Query 018238
Match_columns 359
No_of_seqs 189 out of 243
Neff 4.6
Searched_HMMs 13730
Date Mon Mar 25 12:06:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018238.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/018238hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1sknp_ a.37.1.1 (P:) Skn-1 {C 62.4 2.4 0.00017 31.3 2.8 19 80-98 50-68 (74)
2 d1k1fa_ a.147.1.1 (A:) Bcr-Abl 51.6 4.8 0.00035 28.9 2.9 28 101-128 32-59 (67)
3 d1uklc_ a.38.1.1 (C:) SREBP-2 35.9 15 0.0011 25.1 3.4 23 99-124 33-55 (61)
4 d1v9da_ a.207.1.1 (A:) Diaphan 29.4 1.4E+02 0.01 25.7 9.9 54 293-346 249-302 (332)
5 d1ykhb1 a.252.1.1 (B:2-130) RN 23.1 87 0.0064 24.2 6.4 36 237-272 80-115 (129)
6 d1uz3a1 a.283.1.1 (A:13-102) E 23.0 1.4E+02 0.01 22.1 7.2 30 156-187 33-62 (90)
7 d1uuja_ a.221.1.1 (A:) Lissenc 22.9 30 0.0022 25.1 3.2 20 324-343 1-20 (76)
8 d1q4ga1 a.93.1.2 (A:74-584) Pr 18.4 1E+02 0.0075 28.9 7.0 51 144-195 222-278 (511)
9 d1b33n_ d.30.1.1 (N:) Allophyc 18.2 29 0.0021 24.4 2.1 14 150-163 32-45 (67)
10 d1zbdb_ g.50.1.1 (B:) Effector 17.7 79 0.0057 23.8 4.9 39 240-278 1-39 (124)
No 1
>d1sknp_ a.37.1.1 (P:) Skn-1 {Caenorhabditis elegans [TaxId: 6239]}
Probab=62.38 E-value=2.4 Score=31.29 Aligned_cols=19 Identities=42% Similarity=0.566 Sum_probs=17.1
Q ss_pred HHHHHhhHHHHHHHHHHHH
Q 018238 80 QRRLAQNREAARKSRLRKK 98 (359)
Q Consensus 80 ~rrlaqnreaArksrlrkk 98 (359)
.||=.+|+-||+++|.||-
T Consensus 50 IRRRGKNKvAAqnCRKRKl 68 (74)
T d1sknp_ 50 IRRRGKNKVAARTCRQRRT 68 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHhcccHHHHHHHHHhhh
Confidence 4888999999999999974
No 2
>d1k1fa_ a.147.1.1 (A:) Bcr-Abl oncoprotein oligomerization domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=51.63 E-value=4.8 Score=28.88 Aligned_cols=28 Identities=32% Similarity=0.558 Sum_probs=22.5
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHhhcccc
Q 018238 101 VQQLETSRLKLVQLEQELDRARQQGLYV 128 (359)
Q Consensus 101 vqqLE~sr~kl~qleqel~rar~qg~~~ 128 (359)
-|.||.++..+..|||||-+-|=.-+|+
T Consensus 32 E~eLerCk~~irrLeqel~~ErF~~iYL 59 (67)
T d1k1fa_ 32 EQELERAKASIRRLEQEVNQERFRMIYL 59 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4789999999999999998776545554
No 3
>d1uklc_ a.38.1.1 (C:) SREBP-2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=35.92 E-value=15 Score=25.06 Aligned_cols=23 Identities=22% Similarity=0.195 Sum_probs=18.3
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHhh
Q 018238 99 AYVQQLETSRLKLVQLEQELDRARQQ 124 (359)
Q Consensus 99 ayvqqLE~sr~kl~qleqel~rar~q 124 (359)
.||+.|+. +...|++|....|.+
T Consensus 33 ~YI~~Lq~---~~~~L~~e~~~L~~~ 55 (61)
T d1uklc_ 33 DYIKYLQQ---VNHKLRQENMVLKLA 55 (61)
T ss_dssp HHHHHHHH---HHHHHHHHHHHHHHH
T ss_pred HHHHHHHH---HHHHHHHHHHHHHHH
Confidence 79999999 777788888766643
No 4
>d1v9da_ a.207.1.1 (A:) Diaphanous protein homolog 1, dia1 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=29.41 E-value=1.4e+02 Score=25.69 Aligned_cols=54 Identities=11% Similarity=0.004 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHH
Q 018238 293 TGTAMDKLEALVSFVSQADHLRQETLQQMSRILTTRQAARGLLALGEYFLRLRA 346 (359)
Q Consensus 293 m~~Am~kl~~Le~fl~qAD~LR~qTL~ql~~ILTp~QAA~fLlAl~ey~~rLR~ 346 (359)
+..|..++..|...+.+++..-.++..-..+--+..+.-+|+--+..|...+..
T Consensus 249 l~~a~~~l~~l~~~~~~~~~~~~~~~~yfgEd~~~~~~~efF~~~~~F~~~~~~ 302 (332)
T d1v9da_ 249 VKDAQEQYNKLRMMHSNMETLYKELGDYFVFDPKKLSVEEFFMDLHNFRNMFLQ 302 (332)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCTTTSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 566778889999999999987777777666544445667888888877665543
No 5
>d1ykhb1 a.252.1.1 (B:2-130) RNA polymerase II holoenzyme component SRB7 (MED21) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=23.14 E-value=87 Score=24.25 Aligned_cols=36 Identities=22% Similarity=0.315 Sum_probs=28.9
Q ss_pred ccCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018238 237 PQLEPLTEQQLIDVCNLRQSCQQAEDALSQGMDKLQ 272 (359)
Q Consensus 237 ~~LepLTeqQl~~I~~LqqstqqaEdaLsq~ma~LQ 272 (359)
|.++.-.+.|+.+|..|+.+.+.++..+.+.+.+..
T Consensus 80 P~~~~see~Q~~~i~~Le~E~~~~~~el~~~v~e~e 115 (129)
T d1ykhb1 80 PGVDVSAEEQLRKIDMLQKKLVEVEDEKIEAIKKKE 115 (129)
T ss_dssp TTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666688999999999999999988877665544
No 6
>d1uz3a1 a.283.1.1 (A:13-102) Emsy {Human (Homo sapiens) [TaxId: 9606]}
Probab=22.97 E-value=1.4e+02 Score=22.09 Aligned_cols=30 Identities=23% Similarity=0.279 Sum_probs=21.4
Q ss_pred HHHhHHHHHHHHHHhcCCCchHHHHHHHHHHh
Q 018238 156 EEQSRQICELRNALQAHIGDVELRILVDAGMS 187 (359)
Q Consensus 156 eeq~r~l~eLR~AL~s~~~d~eL~~LVd~~l~ 187 (359)
.+....+.+||..| +++|++-+..|.++.+
T Consensus 33 weke~lLt~LR~~L--~IS~eeHr~elrr~~~ 62 (90)
T d1uz3a1 33 KEKKDLLGELSKVL--SISTERHRAEVRRAVN 62 (90)
T ss_dssp HHHHHHHHHHHHHT--TCCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHh--CCCcHHHHHHHHHhcc
Confidence 47778889999887 4566777766666653
No 7
>d1uuja_ a.221.1.1 (A:) Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=22.87 E-value=30 Score=25.13 Aligned_cols=20 Identities=25% Similarity=0.363 Sum_probs=17.5
Q ss_pred cCCHHHHHHHHHHHHHHHHH
Q 018238 324 ILTTRQAARGLLALGEYFLR 343 (359)
Q Consensus 324 ILTp~QAA~fLlAl~ey~~r 343 (359)
|||++|+.+-=-||.+|+..
T Consensus 1 iLt~rQ~eeL~kaI~~Yl~~ 20 (76)
T d1uuja_ 1 VLSQRQRDELNRAIADYLRS 20 (76)
T ss_dssp CCCHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHH
Confidence 79999999999999999853
No 8
>d1q4ga1 a.93.1.2 (A:74-584) Prostaglandin H2 synthase {Sheep (Ovis aries) [TaxId: 9940]}
Probab=18.41 E-value=1e+02 Score=28.95 Aligned_cols=51 Identities=20% Similarity=0.242 Sum_probs=40.3
Q ss_pred chHHHHHHHHHHHHHhHHHHHHHHHHhcCCCchHH----HHHHHHHHhh--HHHHHHH
Q 018238 144 NSAFEMEYGHWLEEQSRQICELRNALQAHIGDVEL----RILVDAGMSH--YFELFRM 195 (359)
Q Consensus 144 ~~~F~~~Y~~Wleeq~r~l~eLR~AL~s~~~d~eL----~~LVd~~l~H--Y~e~f~~ 195 (359)
.....+...-|+.|||+...+|+. ++.+++|++| |.+|-+.+.| |.||...
T Consensus 222 ~pgL~~lhtlflREHNriad~L~~-~nP~W~DE~LFQ~AR~Ivia~~q~I~~~EyLp~ 278 (511)
T d1q4ga1 222 LPGLMLYATIWLREHNRVCDLLKA-EHPTWGDEQLFQTARLILIGETIKIVIEEYVQQ 278 (511)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHH-HCTTCCHHHHHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred chhHHhHHHHHHHhccHHHHHHHh-hCCCCCHHHHHHHHHHHHHHHeeeeeHHhhHHH
Confidence 346788899999999999999865 4888888764 7777777776 7787664
No 9
>d1b33n_ d.30.1.1 (N:) Allophycocyanin linker chain (domain) {Mastigocladus laminosus [TaxId: 83541]}
Probab=18.24 E-value=29 Score=24.43 Aligned_cols=14 Identities=36% Similarity=0.688 Sum_probs=11.5
Q ss_pred HHHHHHHHHhHHHH
Q 018238 150 EYGHWLEEQSRQIC 163 (359)
Q Consensus 150 ~Y~~Wleeq~r~l~ 163 (359)
-|+.|+.||++.+.
T Consensus 32 py~nWf~EQQrI~K 45 (67)
T d1b33n_ 32 PYENWFREQQRIQK 45 (67)
T ss_dssp EHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHH
Confidence 38999999998754
No 10
>d1zbdb_ g.50.1.1 (B:) Effector domain of rabphilin-3a {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=17.69 E-value=79 Score=23.84 Aligned_cols=39 Identities=15% Similarity=0.203 Sum_probs=30.5
Q ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018238 240 EPLTEQQLIDVCNLRQSCQQAEDALSQGMDKLQQTLAET 278 (359)
Q Consensus 240 epLTeqQl~~I~~LqqstqqaEdaLsq~ma~LQqslad~ 278 (359)
++||+++...|.++-++-...+..-.+.+.++.+.+.+.
T Consensus 1 ~~LT~eE~~~i~~VL~r~~~l~~~E~~rl~~l~~~l~~~ 39 (124)
T d1zbdb_ 1 EELTDEEKEIINRVIARAEKMETMEQERIGRLVDRLETM 39 (124)
T ss_dssp CCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478999888887777777777777778888888887665
Done!