BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 018239
(359 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q6DVA0|LEMD2_MOUSE LEM domain-containing protein 2 OS=Mus musculus GN=Lemd2 PE=1 SV=1
Length = 511
Score = 40.8 bits (94), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 62/130 (47%), Gaps = 9/130 (6%)
Query: 223 LSCRIHQWV---STHALIIVPVCSLLVGCLLLLWKVHRRRYFAIRVEELYHQVCEILE-- 277
+ CR+ + + TH LI + L G L+LL +R R + +Y V +I++
Sbjct: 373 IGCRLSRALLTAVTHVLIFFWCLAFLWGLLILL--KYRWRKLEEEEQAMYEMVKKIIDVV 430
Query: 278 ENALMSKSVNGECEPWVVASRLRDHLLLPKERKD-PVIWKK-VEELVQEDSRVDQYPKLL 335
++ + + E P+V +RD L+ P+ R+ +W + VE L +SR+ +
Sbjct: 431 QDHYVDWEQDMERYPYVGILHVRDSLIPPQSRRRMKRVWDRAVEFLASNESRIQTESHRV 490
Query: 336 KGESKVVWEW 345
GE +VW W
Sbjct: 491 AGEDMLVWRW 500
>sp|Q9Y2U8|MAN1_HUMAN Inner nuclear membrane protein Man1 OS=Homo sapiens GN=LEMD3 PE=1
SV=2
Length = 911
Score = 38.5 bits (88), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 60/119 (50%), Gaps = 9/119 (7%)
Query: 233 THALIIVPVCSLLVGCLLLLWKVHRRRYFAIRVEELYHQVCEILEENALMSKSV----NG 288
TH L+++ + ++V C++L + +R ++Y V +I++ L S + N
Sbjct: 632 THRLLLLCLGVVMV-CVVLRYMKYRWTKEEEETRQMYDMVVKIID--VLRSHNEACQENK 688
Query: 289 ECEPWVVASRLRDHLLLPKERKD-PVIW-KKVEELVQEDSRVDQYPKLLKGESKVVWEW 345
+ +P++ +RD L+ P +RK +W + V+ L +SRV + + G +VW W
Sbjct: 689 DLQPYMPIPHVRDSLIQPHDRKKMKKVWDRAVDFLAANESRVRTETRRIGGADFLVWRW 747
>sp|Q8NC56|LEMD2_HUMAN LEM domain-containing protein 2 OS=Homo sapiens GN=LEMD2 PE=1 SV=1
Length = 503
Score = 37.7 bits (86), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 56/117 (47%), Gaps = 6/117 (5%)
Query: 233 THALIIVPVCSLLVGCLLLLWKVHRRRYFAIRVEELYHQVCEILE--ENALMSKSVNGEC 290
T+ LI + L G L+LL +R R + +Y V +I++ ++ + + E
Sbjct: 378 TNVLIFFWCLAFLWGLLILL--KYRWRKLEEEEQAMYEMVKKIIDVVQDHYVDWEQDMER 435
Query: 291 EPWVVASRLRDHLLLPKERKD-PVIWKK-VEELVQEDSRVDQYPKLLKGESKVVWEW 345
P+V +RD L+ P+ R+ +W + VE L +SR+ + GE +VW W
Sbjct: 436 YPYVGILHVRDSLIPPQSRRRMKRVWDRAVEFLASNESRIQTESHRVAGEDMLVWRW 492
>sp|Q62556|BT1A1_MOUSE Butyrophilin subfamily 1 member A1 OS=Mus musculus GN=Btn1a1 PE=1
SV=2
Length = 524
Score = 35.4 bits (80), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 28/118 (23%), Positives = 53/118 (44%), Gaps = 3/118 (2%)
Query: 222 PLSCRIHQWVSTHALIIVPVCSLLVGCLLLLWKVHRRRYFAIRVEELYHQVCEILEENAL 281
P R+ W+ A+I++ + L +G + WK+++ R ++R +E + E L E
Sbjct: 239 PFVPRLTPWIVAVAIILLALGFLTIGSIFFTWKLYKERS-SLRKKEFGSK--ERLLEELR 295
Query: 282 MSKSVNGECEPWVVASRLRDHLLLPKERKDPVIWKKVEELVQEDSRVDQYPKLLKGES 339
K+V E + + HL L ++ K + + L R D +P +L E+
Sbjct: 296 CKKTVLHEVDVTLDPDTAHPHLFLYEDSKSVRLEDSRQILPDRPERFDSWPCVLGRET 353
>sp|A7HCP4|SYR_ANADF Arginine--tRNA ligase OS=Anaeromyxobacter sp. (strain Fw109-5)
GN=argS PE=3 SV=1
Length = 605
Score = 33.9 bits (76), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 26/58 (44%), Gaps = 9/58 (15%)
Query: 104 QGKLECFHGYRKHGKLCVE---DGDINETAGRLSRWVENRLCRAYAQFLCDGTGSIWV 158
Q + FH Y GK E D +TAGRL LCRA Q L +G G + V
Sbjct: 536 QETIAAFHSYYTQGKRTGERVISADARKTAGRLF------LCRALKQVLANGLGLLGV 587
>sp|Q7SGG0|SRB8_NEUCR Mediator of RNA polymerase II transcription subunit 12 OS=Neurospora
crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM
1257 / FGSC 987) GN=srb-8 PE=3 SV=1
Length = 1789
Score = 33.9 bits (76), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 27/65 (41%), Gaps = 5/65 (7%)
Query: 49 ITVVAIASSVALTCNYLANFLNSTSKPFCDSNLLL-----DSPQSPTDSCEPCPSNGECH 103
+ V A +T + N N + PFC LLL D Q+ DS E PSN E
Sbjct: 1273 LLVTAAGEGTRVTFEQVLNLTNEFTLPFCHVKLLLSLSSNDQQQNAADSGERVPSNVELF 1332
Query: 104 QGKLE 108
+E
Sbjct: 1333 MNAME 1337
>sp|Q9WU40|MAN1_MOUSE Inner nuclear membrane protein Man1 OS=Mus musculus GN=Lemd3 PE=1
SV=2
Length = 921
Score = 33.5 bits (75), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 47/95 (49%), Gaps = 8/95 (8%)
Query: 259 RYFAIRVEELYHQVCEILEENALMSKSVNGECE------PWVVASRLRDHLLLPKERKD- 311
RY + EE Q+ +++ + + +S N C+ P++ +RD L+ P++RK
Sbjct: 663 RYRWTKEEEETRQMYDMVVKIIDVLRSHNEACQETKDLQPYMPLPHVRDSLIQPQDRKKM 722
Query: 312 PVIW-KKVEELVQEDSRVDQYPKLLKGESKVVWEW 345
+W + V+ L +SRV + + G +VW W
Sbjct: 723 KKVWDRAVDFLAANESRVRTETRRVGGADFLVWRW 757
>sp|C5DLA5|SHE3_LACTC SWI5-dependent HO expression protein 3 OS=Lachancea thermotolerans
(strain ATCC 56472 / CBS 6340 / NRRL Y-8284) GN=SHE3
PE=3 SV=1
Length = 423
Score = 32.7 bits (73), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 49/110 (44%), Gaps = 10/110 (9%)
Query: 128 ETAGRLSRWVENRLCRAYAQF--LCDGTGSIWVEENDIWNDLEGHELMKI---FELDNPV 182
+T+G+ +EN+L + Q+ L DG + DLE EL K F+ DN +
Sbjct: 148 QTSGQREGTLENQLQQLQVQYDALVDGQKRYREKY-----DLEVEELKKSLQDFKRDNEM 202
Query: 183 YLYTKKRTMETVGRYLESRTNSYGMKELKCPELLAEHYKPLSCRIHQWVS 232
YL +T+ + L+++ N Y K L +H + LS + S
Sbjct: 203 YLTKNIQTVVSNNTALQTKINQYSGKYKNLESLSQQHMQELSREVEGMAS 252
>sp|Q14112|NID2_HUMAN Nidogen-2 OS=Homo sapiens GN=NID2 PE=1 SV=3
Length = 1375
Score = 32.3 bits (72), Expect = 5.4, Method: Composition-based stats.
Identities = 21/68 (30%), Positives = 29/68 (42%), Gaps = 12/68 (17%)
Query: 84 DSPQSPTDSC----EPCPSNGECHQGK-----LECFHGYRKHGKLCVEDGDINETAGRLS 134
DS +P + C C + CH G EC GY+ G+ CV++ NE A
Sbjct: 754 DSDPTPGNPCYDGSHMCDTTARCHPGTGVDYTCECASGYQGDGRNCVDE---NECATGFH 810
Query: 135 RWVENRLC 142
R N +C
Sbjct: 811 RCGPNSVC 818
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.132 0.416
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 142,883,134
Number of Sequences: 539616
Number of extensions: 6164832
Number of successful extensions: 36417
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 47
Number of HSP's that attempted gapping in prelim test: 33851
Number of HSP's gapped (non-prelim): 1738
length of query: 359
length of database: 191,569,459
effective HSP length: 119
effective length of query: 240
effective length of database: 127,355,155
effective search space: 30565237200
effective search space used: 30565237200
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (28.5 bits)