BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 018240
(359 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2FM1|A Chain A, Crystal Structure Of L-allo-threonine Aldolase (tm1744)
From Thermotoga Maritima At 2.25 A Resolution
pdb|2FM1|B Chain B, Crystal Structure Of L-allo-threonine Aldolase (tm1744)
From Thermotoga Maritima At 2.25 A Resolution
pdb|2FM1|C Chain C, Crystal Structure Of L-allo-threonine Aldolase (tm1744)
From Thermotoga Maritima At 2.25 A Resolution
pdb|2FM1|D Chain D, Crystal Structure Of L-allo-threonine Aldolase (tm1744)
From Thermotoga Maritima At 2.25 A Resolution
Length = 355
Score = 289 bits (739), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 162/345 (46%), Positives = 217/345 (62%), Gaps = 7/345 (2%)
Query: 6 VDLRSDTVTKPTEAMRAAMASAEVDDDVLMHDPTAFRLETEMAKVMGKEAGLFVPSGTMG 65
+DLRSDTVTKPTE MR AMA AEV DDV DPT LE A+ GKEA LFVPSGTMG
Sbjct: 14 IDLRSDTVTKPTEEMRKAMAQAEVGDDVYGEDPTINELERLAAETFGKEAALFVPSGTMG 73
Query: 66 NLISVLVHCETRGSEVILGDNSHIHIYENGGISTIGGVHPRTVKNNQDGTMDIDLIEAAI 125
N +S++ H + RG EVIL +SHI YE G ++ + GV P V ++G MD D + AI
Sbjct: 74 NQVSIMAHTQ-RGDEVILEADSHIFWYEVGAMAVLSGVMPHPVPG-KNGAMDPDDVRKAI 131
Query: 126 RDPKGEIVYPTTRLICLENTHANCGGRCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAV 185
R P+ I +P T LI +ENTH GGR + +E + IAK+HG+ +HIDGARIFNA++
Sbjct: 132 R-PRN-IHFPRTSLIAIENTHNRSGGRVVPLENIKEICTIAKEHGINVHIDGARIFNASI 189
Query: 186 ALGVPVRRLVQAADSASVCLSKGLGAPVGSVIVGSKEFIKKARRLRKTLGGGMRQXXXXX 245
A GVPV+ ADS CLS GL APVGSV+VG ++FI++AR+ RK LGGGMRQ
Sbjct: 190 ASGVPVKEYAGYADSVMFCLSXGLCAPVGSVVVGDRDFIERARKARKMLGGGMRQAGVLA 249
Query: 246 XXXXXXXQENVLVMLDGDHKKAKLLAEGLNQLKGLRVDVDAVETNIVYFEITEDSKLYAA 305
+ ++ L DH+ A+ LA L ++ G V+ + V+TN+V T++ K+ A
Sbjct: 250 AAGIIALTK-MVDRLKEDHENARFLALKLKEI-GYSVNPEDVKTNMVILR-TDNLKVNAH 306
Query: 306 CLLKKLEEHGVLVMPESSTRVRIVVHHQISANDVHYTLSCFQKIY 350
++ L GVL S T +R+V H +S ND+ L+ F+K++
Sbjct: 307 GFIEALRNSGVLANAVSDTEIRLVTHKDVSRNDIEEALNIFEKLF 351
>pdb|1JG8|A Chain A, Crystal Structure Of Threonine Aldolase (Low-Specificity)
pdb|1JG8|B Chain B, Crystal Structure Of Threonine Aldolase (Low-Specificity)
pdb|1JG8|C Chain C, Crystal Structure Of Threonine Aldolase (Low-Specificity)
pdb|1JG8|D Chain D, Crystal Structure Of Threonine Aldolase (Low-Specificity)
pdb|1M6S|A Chain A, Crystal Structure Of Threonine Aldolase
pdb|1M6S|B Chain B, Crystal Structure Of Threonine Aldolase
pdb|1M6S|C Chain C, Crystal Structure Of Threonine Aldolase
pdb|1M6S|D Chain D, Crystal Structure Of Threonine Aldolase
Length = 347
Score = 288 bits (738), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 162/345 (46%), Positives = 217/345 (62%), Gaps = 7/345 (2%)
Query: 6 VDLRSDTVTKPTEAMRAAMASAEVDDDVLMHDPTAFRLETEMAKVMGKEAGLFVPSGTMG 65
+DLRSDTVTKPTE MR AMA AEV DDV DPT LE A+ GKEA LFVPSGTMG
Sbjct: 6 IDLRSDTVTKPTEEMRKAMAQAEVGDDVYGEDPTINELERLAAETFGKEAALFVPSGTMG 65
Query: 66 NLISVLVHCETRGSEVILGDNSHIHIYENGGISTIGGVHPRTVKNNQDGTMDIDLIEAAI 125
N +S++ H + RG EVIL +SHI YE G ++ + GV P V ++G MD D + AI
Sbjct: 66 NQVSIMAHTQ-RGDEVILEADSHIFWYEVGAMAVLSGVMPHPVPG-KNGAMDPDDVRKAI 123
Query: 126 RDPKGEIVYPTTRLICLENTHANCGGRCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAV 185
R P+ I +P T LI +ENTH GGR + +E + IAK+HG+ +HIDGARIFNA++
Sbjct: 124 R-PRN-IHFPRTSLIAIENTHNRSGGRVVPLENIKEICTIAKEHGINVHIDGARIFNASI 181
Query: 186 ALGVPVRRLVQAADSASVCLSKGLGAPVGSVIVGSKEFIKKARRLRKTLGGGMRQXXXXX 245
A GVPV+ ADS CLS GL APVGSV+VG ++FI++AR+ RK LGGGMRQ
Sbjct: 182 ASGVPVKEYAGYADSVMFCLSXGLCAPVGSVVVGDRDFIERARKARKMLGGGMRQAGVLA 241
Query: 246 XXXXXXXQENVLVMLDGDHKKAKLLAEGLNQLKGLRVDVDAVETNIVYFEITEDSKLYAA 305
+ ++ L DH+ A+ LA L ++ G V+ + V+TN+V T++ K+ A
Sbjct: 242 AAGIIALTK-MVDRLKEDHENARFLALKLKEI-GYSVNPEDVKTNMVILR-TDNLKVNAH 298
Query: 306 CLLKKLEEHGVLVMPESSTRVRIVVHHQISANDVHYTLSCFQKIY 350
++ L GVL S T +R+V H +S ND+ L+ F+K++
Sbjct: 299 GFIEALRNSGVLANAVSDTEIRLVTHKDVSRNDIEEALNIFEKLF 343
>pdb|1LW4|A Chain A, X-Ray Structure Of L-Threonine Aldolase (Low-Specificity)
In Complex With L-Allo-Threonine
pdb|1LW4|B Chain B, X-Ray Structure Of L-Threonine Aldolase (Low-Specificity)
In Complex With L-Allo-Threonine
pdb|1LW4|C Chain C, X-Ray Structure Of L-Threonine Aldolase (Low-Specificity)
In Complex With L-Allo-Threonine
pdb|1LW4|D Chain D, X-Ray Structure Of L-Threonine Aldolase (Low-Specificity)
In Complex With L-Allo-Threonine
pdb|1LW5|A Chain A, X-ray Structure Of L-threonine Aldolase (low-specificity)
In Complex With Glycine
pdb|1LW5|B Chain B, X-ray Structure Of L-threonine Aldolase (low-specificity)
In Complex With Glycine
pdb|1LW5|C Chain C, X-ray Structure Of L-threonine Aldolase (low-specificity)
In Complex With Glycine
pdb|1LW5|D Chain D, X-ray Structure Of L-threonine Aldolase (low-specificity)
In Complex With Glycine
Length = 347
Score = 274 bits (700), Expect = 6e-74, Method: Compositional matrix adjust.
Identities = 158/345 (45%), Positives = 208/345 (60%), Gaps = 7/345 (2%)
Query: 6 VDLRSDTVTKPTEAMRAAMASAEVDDDVLMHDPTAFRLETEMAKVMGKEAGLFVPSGTMG 65
+DLRSDTVTKPTE R A A AEV DDV DPT LE A+ GKEA LFVPSGT G
Sbjct: 6 IDLRSDTVTKPTEEXRKAXAQAEVGDDVYGEDPTINELERLAAETFGKEAALFVPSGTXG 65
Query: 66 NLISVLVHCETRGSEVILGDNSHIHIYENGGISTIGGVHPRTVKNNQDGTMDIDLIEAAI 125
N +S+ H + RG EVIL +SHI YE G + + GV P V ++G D D + AI
Sbjct: 66 NQVSIXAHTQ-RGDEVILEADSHIFWYEVGAXAVLSGVXPHPVPG-KNGAXDPDDVRKAI 123
Query: 126 RDPKGEIVYPTTRLICLENTHANCGGRCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAV 185
R P+ I +P T LI +ENTH GGR + +E + IAK+HG+ +HIDGARIFNA++
Sbjct: 124 R-PRN-IHFPRTSLIAIENTHNRSGGRVVPLENIKEICTIAKEHGINVHIDGARIFNASI 181
Query: 186 ALGVPVRRLVQAADSASVCLSKGLGAPVGSVIVGSKEFIKKARRLRKTLGGGMRQXXXXX 245
A GVPV+ ADS CLS GL APVGSV+VG ++FI++AR+ RK LGGG RQ
Sbjct: 182 ASGVPVKEYAGYADSVXFCLSXGLCAPVGSVVVGDRDFIERARKARKXLGGGXRQAGVLA 241
Query: 246 XXXXXXXQENVLVMLDGDHKKAKLLAEGLNQLKGLRVDVDAVETNIVYFEITEDSKLYAA 305
+ V L DH+ A+ LA L ++ G V+ + V+TN V T++ K+ A
Sbjct: 242 AAGIIALTKXV-DRLKEDHENARFLALKLKEI-GYSVNPEDVKTNXVILR-TDNLKVNAH 298
Query: 306 CLLKKLEEHGVLVMPESSTRVRIVVHHQISANDVHYTLSCFQKIY 350
++ L GVL S T +R+V H +S ND+ L+ F+K++
Sbjct: 299 GFIEALRNSGVLANAVSDTEIRLVTHKDVSRNDIEEALNIFEKLF 343
>pdb|3PJ0|A Chain A, Crystal Structure Of A Putative L-Allo-Threonine Aldolase
(Lmo0305) From Listeria Monocytogenes Egd-E At 1.80 A
Resolution
pdb|3PJ0|B Chain B, Crystal Structure Of A Putative L-Allo-Threonine Aldolase
(Lmo0305) From Listeria Monocytogenes Egd-E At 1.80 A
Resolution
pdb|3PJ0|C Chain C, Crystal Structure Of A Putative L-Allo-Threonine Aldolase
(Lmo0305) From Listeria Monocytogenes Egd-E At 1.80 A
Resolution
pdb|3PJ0|D Chain D, Crystal Structure Of A Putative L-Allo-Threonine Aldolase
(Lmo0305) From Listeria Monocytogenes Egd-E At 1.80 A
Resolution
Length = 359
Score = 69.7 bits (169), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 68/278 (24%), Positives = 128/278 (46%), Gaps = 18/278 (6%)
Query: 43 LETEMAKVMGKEAGLFVPSGTMGNLISVLVHCETR-GSEVILGDNSHIHIYENGGISTIG 101
ET++AK++GK++ +F PSGT I++ + + + V SH+ I+E G+ +
Sbjct: 53 FETKIAKILGKQSAVFFPSGTXAQQIALRIWADRKENRRVAYHPLSHLEIHEQDGLKELQ 112
Query: 102 GVHPRTVKN-NQDGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGGRCLSVEYTD 160
+ P + NQ T+D D+ ++R+P ++ +E GG+ + E +
Sbjct: 113 QITPLLLGTANQLLTID-DI--KSLREPVSSVL--------IELPQREIGGQLPAFEELE 161
Query: 161 SVGEIAKKHGLKLHIDGARIFNAAVALGVPVRRLVQAADSASVCLSKGLGAPVGSVIVGS 220
+ E + G+ LH+DGAR++ + DS V G+G G+++ G+
Sbjct: 162 KISEYCHEQGISLHLDGARLWEITPFYQKSAEEICALFDSVYVSFYXGIGGIAGAILAGN 221
Query: 221 KEFIKKARRLRKTLGGGMRQXXXXXXXXXXXXQENVLVMLDGDHKKAKLLAEGLNQLKGL 280
+F+++A+ ++ GG + ++ + + + AK LAE N G+
Sbjct: 222 DDFVQEAKIWKRRYGGDLISLYPYILSADYYFEKRIGKXAEY-FEAAKGLAERFNSCSGV 280
Query: 281 RVDVDAVETNI--VYFEITEDSKLYAACLLKKLEEHGV 316
+ + +N VYFE + D A L K +E GV
Sbjct: 281 KTVPEVPVSNXFHVYFENSADE--IGAILTKIQDETGV 316
>pdb|3LWS|A Chain A, Crystal Structure Of Putative Aromatic Amino Acid Beta-
Eliminating LyaseTHREONINE ALDOLASE. (YP_001813866.1)
FROM Exiguobacterium Sp. 255-15 At 2.00 A Resolution
pdb|3LWS|B Chain B, Crystal Structure Of Putative Aromatic Amino Acid Beta-
Eliminating LyaseTHREONINE ALDOLASE. (YP_001813866.1)
FROM Exiguobacterium Sp. 255-15 At 2.00 A Resolution
pdb|3LWS|C Chain C, Crystal Structure Of Putative Aromatic Amino Acid Beta-
Eliminating LyaseTHREONINE ALDOLASE. (YP_001813866.1)
FROM Exiguobacterium Sp. 255-15 At 2.00 A Resolution
pdb|3LWS|D Chain D, Crystal Structure Of Putative Aromatic Amino Acid Beta-
Eliminating LyaseTHREONINE ALDOLASE. (YP_001813866.1)
FROM Exiguobacterium Sp. 255-15 At 2.00 A Resolution
pdb|3LWS|E Chain E, Crystal Structure Of Putative Aromatic Amino Acid Beta-
Eliminating LyaseTHREONINE ALDOLASE. (YP_001813866.1)
FROM Exiguobacterium Sp. 255-15 At 2.00 A Resolution
pdb|3LWS|F Chain F, Crystal Structure Of Putative Aromatic Amino Acid Beta-
Eliminating LyaseTHREONINE ALDOLASE. (YP_001813866.1)
FROM Exiguobacterium Sp. 255-15 At 2.00 A Resolution
Length = 357
Score = 67.8 bits (164), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 65/279 (23%), Positives = 111/279 (39%), Gaps = 31/279 (11%)
Query: 43 LETEMAKVMGKEAGLFVPSGTMGNLISVLVHC-ETRGSEVILGDNSHIHIYENGGISTIG 101
E + A V+G + +F PSGT +++ + ET V H+ I+E G+ +
Sbjct: 52 FEQKFADVLGXDDAVFFPSGTXAQQVALRIWSDETDNRTVAYHPLCHLEIHEQDGLKEL- 110
Query: 102 GVHP--RTVKNNQDGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGGRCLSVEYT 159
HP + D +D I+A P + LE GG +
Sbjct: 111 --HPIETILVGAADRLXTLDEIKAL----------PDIACLLLELPQREIGGVAPAFSEL 158
Query: 160 DSVGEIAKKHGLKLHIDGARIFNAAVALGVPVRRLVQAADSASVCLSKGLGAPVGSVIVG 219
+++ ++ G++LH+DGAR+F + DS + GLG G+++ G
Sbjct: 159 ETISRYCRERGIRLHLDGARLFEXLPYYEKTAAEIAGLFDSIYISFYXGLGGIAGAILAG 218
Query: 220 SKEFIKKARRLRKTLGGGMRQXXXXXXXXXXXXQENVLVMLDGD-----HKKAKLLAEGL 274
F + AR ++ GG + + L D +++AK LAE
Sbjct: 219 PAAFCQTARIWKRRYGGDL------ISLYPYIVSADYYYELRKDRXGQYYEQAKQLAEQF 272
Query: 275 NQLKGLRVDVDAVETNIVYFEITEDSKLYAACLLKKLEE 313
N L G+ + +N F + D + AA + KLE+
Sbjct: 273 NALPGVHTTPEVPVSNX--FHLHFDGQ--AADISPKLEQ 307
>pdb|3VK2|A Chain A, Crystal Structure Of L-Methionine Gamma-Lyase From
Pseudomonas Putida C116h Mutant.
pdb|3VK2|B Chain B, Crystal Structure Of L-Methionine Gamma-Lyase From
Pseudomonas Putida C116h Mutant.
pdb|3VK2|C Chain C, Crystal Structure Of L-Methionine Gamma-Lyase From
Pseudomonas Putida C116h Mutant.
pdb|3VK2|D Chain D, Crystal Structure Of L-Methionine Gamma-Lyase From
Pseudomonas Putida C116h Mutant.
pdb|3VK3|A Chain A, Crystal Structure Of L-Methionine Gamma-Lyase From
Pseudomonas Putida C116h Mutant Complexed With
L-Methionine
pdb|3VK3|B Chain B, Crystal Structure Of L-Methionine Gamma-Lyase From
Pseudomonas Putida C116h Mutant Complexed With
L-Methionine
pdb|3VK3|C Chain C, Crystal Structure Of L-Methionine Gamma-Lyase From
Pseudomonas Putida C116h Mutant Complexed With
L-Methionine
pdb|3VK3|D Chain D, Crystal Structure Of L-Methionine Gamma-Lyase From
Pseudomonas Putida C116h Mutant Complexed With
L-Methionine
pdb|3VK4|A Chain A, Crystal Structure Of L-Methionine Gamma-Lyase From
Pseudomonas Putida C116h Mutant Complexed With
L-Homocysteine
pdb|3VK4|B Chain B, Crystal Structure Of L-Methionine Gamma-Lyase From
Pseudomonas Putida C116h Mutant Complexed With
L-Homocysteine
pdb|3VK4|C Chain C, Crystal Structure Of L-Methionine Gamma-Lyase From
Pseudomonas Putida C116h Mutant Complexed With
L-Homocysteine
pdb|3VK4|D Chain D, Crystal Structure Of L-Methionine Gamma-Lyase From
Pseudomonas Putida C116h Mutant Complexed With
L-Homocysteine
Length = 398
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 68/230 (29%), Positives = 97/230 (42%), Gaps = 38/230 (16%)
Query: 9 RSDTVTKPTEAMRAAMASAEVDDDVL--MHDPTAFRLETEMAKVMGKEAGLFVPSGTMGN 66
++ T T PT AA + E + +PT LE MA + G EAGL + SG MG
Sbjct: 34 QTATFTFPTVEYGAACFAGEQAGHFYSRISNPTLNLLEARMASLEGGEAGLALASG-MGA 92
Query: 67 LISVLVHCETRGSEVILGDNSHIHIYE--NGGISTIGGVHPRTVKNNQDGTMDIDLIEAA 124
+ S L G EV+LG+ + H + + GI G VK D+ +EAA
Sbjct: 93 ITSTLWTLLRPGDEVLLGNTLYGHTFAFLHHGIGEFG------VKLRHVDMADLQALEAA 146
Query: 125 IRDPKGEIVYPTTRLICLENTHANCGGRCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAA 184
+ P TR+I E+ AN + V +IA+KHG + +D
Sbjct: 147 MT--------PATRVIYFESP-ANPNMHMADIA---GVAKIARKHGATVVVDNTYC---- 190
Query: 185 VALGVPV--RRLVQAAD----SASVCLSKGLGAPVGSVIVGSKEFIKKAR 228
P R L AD SA+ LS G G ++VGS+ + + R
Sbjct: 191 ----TPYLQRPLELGADLVVHSATXYLS-GHGDITAGIVVGSQALVDRIR 235
>pdb|1SVV|A Chain A, Initial Stuctural Analysis Of Leishmania Major Threonine
Aldolase
pdb|1SVV|B Chain B, Initial Stuctural Analysis Of Leishmania Major Threonine
Aldolase
Length = 359
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 69/254 (27%), Positives = 107/254 (42%), Gaps = 24/254 (9%)
Query: 58 FVPSGTMGNLISVLVHCETRGSEVILGDN-SHIHIYENGGISTIGGVHPRTVKNNQDGTM 116
F+ GT NLI+ + R E ++ HI +E G I G H DG +
Sbjct: 71 FISGGTQTNLIACSL--ALRPWEAVIATQLGHISTHETGAIEATG--HKVVTAPCPDGKL 126
Query: 117 DIDLIEAAIRDPKGE-IVYPTTRLICLENTHANCGGRCLSVEYTDSVGEIAKKHGLKLHI 175
+ IE+A+ + + E V P +L+ + NT G + E D + K+HGL L +
Sbjct: 127 RVADIESALHENRSEHXVIP--KLVYISNT-TEVGTQYTKQELED-ISASCKEHGLYLFL 182
Query: 176 DGARIFNAAVALGVPVRRLVQA-----ADSASVCLSKGLGAPVGSVIVGSKEFIKKARRL 230
DGAR+ A AL PV L A D + +K G ++I+ + AR L
Sbjct: 183 DGARL---ASALSSPVNDLTLADIARLTDXFYIGATKAGGXFGEALIILNDALKPNARHL 239
Query: 231 RKTLGGGMRQXXXXXXXXXXXXQENVLVMLDGDH--KKAKLLAEGLNQLKGLRVDVDAVE 288
K G + ++N+ L G H K A +L GL G+R+ +
Sbjct: 240 IKQRGALXAKGWLLGIQFEVLXKDNLFFEL-GAHSNKXAAILKAGLEAC-GIRLAWPSAS 297
Query: 289 TNIVYFEITEDSKL 302
+ F I E++ +
Sbjct: 298 NQL--FPILENTXI 309
>pdb|1GC0|A Chain A, Crystal Structure Of The Pyridoxal-5'-Phosphate Dependent
L- Methionine Gamma-Lyase From Pseudomonas Putida
pdb|1GC0|B Chain B, Crystal Structure Of The Pyridoxal-5'-Phosphate Dependent
L- Methionine Gamma-Lyase From Pseudomonas Putida
pdb|1GC0|C Chain C, Crystal Structure Of The Pyridoxal-5'-Phosphate Dependent
L- Methionine Gamma-Lyase From Pseudomonas Putida
pdb|1GC0|D Chain D, Crystal Structure Of The Pyridoxal-5'-Phosphate Dependent
L- Methionine Gamma-Lyase From Pseudomonas Putida
pdb|1GC2|A Chain A, Crystal Structure Of The Pyridoxal-5'-Phosphate Dependent
L- Methionine Gamma-Lyase From Pseudomonas Putida
pdb|1GC2|B Chain B, Crystal Structure Of The Pyridoxal-5'-Phosphate Dependent
L- Methionine Gamma-Lyase From Pseudomonas Putida
pdb|1GC2|C Chain C, Crystal Structure Of The Pyridoxal-5'-Phosphate Dependent
L- Methionine Gamma-Lyase From Pseudomonas Putida
pdb|1GC2|D Chain D, Crystal Structure Of The Pyridoxal-5'-Phosphate Dependent
L- Methionine Gamma-Lyase From Pseudomonas Putida
pdb|1UKJ|A Chain A, Detailed Structure Of L-Methionine-Lyase From Pseudomonas
Putida
pdb|1UKJ|B Chain B, Detailed Structure Of L-Methionine-Lyase From Pseudomonas
Putida
pdb|1UKJ|C Chain C, Detailed Structure Of L-Methionine-Lyase From Pseudomonas
Putida
pdb|1UKJ|D Chain D, Detailed Structure Of L-Methionine-Lyase From Pseudomonas
Putida
pdb|2O7C|A Chain A, Crystal Structure Of L-Methionine-Lyase From Pseudomonas
pdb|2O7C|B Chain B, Crystal Structure Of L-Methionine-Lyase From Pseudomonas
pdb|2O7C|C Chain C, Crystal Structure Of L-Methionine-Lyase From Pseudomonas
pdb|2O7C|D Chain D, Crystal Structure Of L-Methionine-Lyase From Pseudomonas
Length = 398
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 67/230 (29%), Positives = 96/230 (41%), Gaps = 38/230 (16%)
Query: 9 RSDTVTKPTEAMRAAMASAEVDDDVL--MHDPTAFRLETEMAKVMGKEAGLFVPSGTMGN 66
++ T T PT AA + E + +PT LE MA + G EAGL + SG MG
Sbjct: 34 QTATFTFPTVEYGAACFAGEQAGHFYSRISNPTLNLLEARMASLEGGEAGLALASG-MGA 92
Query: 67 LISVLVHCETRGSEVILGDNSH--IHIYENGGISTIGGVHPRTVKNNQDGTMDIDLIEAA 124
+ S L G EV+LG+ + + + GI G VK D+ +EAA
Sbjct: 93 ITSTLWTLLRPGDEVLLGNTLYGCTFAFLHHGIGEFG------VKLRHVDMADLQALEAA 146
Query: 125 IRDPKGEIVYPTTRLICLENTHANCGGRCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAA 184
+ P TR+I E+ AN + V +IA+KHG + +D
Sbjct: 147 MT--------PATRVIYFESP-ANPNMHMADIA---GVAKIARKHGATVVVDNTYC---- 190
Query: 185 VALGVPV--RRLVQAAD----SASVCLSKGLGAPVGSVIVGSKEFIKKAR 228
P R L AD SA+ LS G G ++VGS+ + + R
Sbjct: 191 ----TPYLQRPLELGADLVVHSATXYLS-GHGDITAGIVVGSQALVDRIR 235
>pdb|1PG8|A Chain A, Crystal Structure Of L-Methionine Alpha-, Gamma-Lyase
pdb|1PG8|B Chain B, Crystal Structure Of L-Methionine Alpha-, Gamma-Lyase
pdb|1PG8|C Chain C, Crystal Structure Of L-Methionine Alpha-, Gamma-Lyase
pdb|1PG8|D Chain D, Crystal Structure Of L-Methionine Alpha-, Gamma-Lyase
Length = 398
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 67/230 (29%), Positives = 96/230 (41%), Gaps = 38/230 (16%)
Query: 9 RSDTVTKPTEAMRAAMASAEVDDDVL--MHDPTAFRLETEMAKVMGKEAGLFVPSGTMGN 66
++ T T PT AA + E + +PT LE MA + G EAGL + SG MG
Sbjct: 34 QTATFTFPTVEYGAACFAGEQAGHFYSRISNPTLNLLEARMASLEGGEAGLALASG-MGA 92
Query: 67 LISVLVHCETRGSEVILGDNSH--IHIYENGGISTIGGVHPRTVKNNQDGTMDIDLIEAA 124
+ S L G EV+LG+ + + + GI G VK D+ +EAA
Sbjct: 93 ITSTLWTLLRPGDEVLLGNTLYGCTFAFLHHGIGEFG------VKLRHVDMADLQALEAA 146
Query: 125 IRDPKGEIVYPTTRLICLENTHANCGGRCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAA 184
+ P TR+I E+ AN + V +IA+KHG + +D
Sbjct: 147 MT--------PATRVIYFESP-ANPNMHMADIA---GVAKIARKHGATVVVDNTYC---- 190
Query: 185 VALGVPV--RRLVQAAD----SASVCLSKGLGAPVGSVIVGSKEFIKKAR 228
P R L AD SA+ LS G G ++VGS+ + + R
Sbjct: 191 ----TPYLQRPLELGADLVVHSATKYLS-GHGDITAGIVVGSQALVDRIR 235
>pdb|1V72|A Chain A, Crystal Structure Of Phenylserine Aldolase From
Pseudomonas Putida
Length = 356
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 34/132 (25%), Positives = 59/132 (44%), Gaps = 3/132 (2%)
Query: 57 LFVPSGTMGNLISVLVHCETRGSEVILGDNSHIHIYENGGISTIGGVHPRTVKNNQDGTM 116
VP+GT N + + G+ + SHI+ E G + +
Sbjct: 63 FLVPTGTAANALCLSAMTPPWGN-IYCHPASHINNDECGAPEFFSNGAKLMTVDGPAAKL 121
Query: 117 DIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGGRCLSVEYTDSVGEIAKKHGLKLHID 176
DI + R+ G++ TT+ C+ T A G +++ +++G++ K L LH+D
Sbjct: 122 DIVRLRERTREKVGDV--HTTQPACVSITQATEVGSIYTLDEIEAIGDVCKSSSLGLHMD 179
Query: 177 GARIFNAAVALG 188
G+R NA V+LG
Sbjct: 180 GSRFANALVSLG 191
>pdb|2JIS|A Chain A, Human Cysteine Sulfinic Acid Decarboxylase (Csad) In
Complex With Plp.
pdb|2JIS|B Chain B, Human Cysteine Sulfinic Acid Decarboxylase (Csad) In
Complex With Plp
Length = 515
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 50/213 (23%), Positives = 86/213 (40%), Gaps = 29/213 (13%)
Query: 17 TEAMRAAMASAEVDD-DVLMHDPTAFRLETEMAKVMGKEAGLFVPSGTMGNLISV----- 70
TE++ + + E+ VLM + +L + G G+F P G++ N+ +V
Sbjct: 130 TESLNTSQYTYEIAPVFVLMEEEVLRKLRALVGWSSGD--GIFCPGGSISNMYAVNLARY 187
Query: 71 --LVHCETRGSE------VILGDNSHIHIYENGGISTIGGVHPRTVKNNQDGTMDIDLIE 122
C+ RG + H I + +G R VK ++ G M + +E
Sbjct: 188 QRYPDCKQRGLRTLPPLALFTSKECHYSIQKGAAFLGLGTDSVRVVKADERGKMVPEDLE 247
Query: 123 AAIRDPKGEIVYPTTRLICLENTHANCGGRCL-SVEYTDSVGEIAKKHGLKLHIDGARIF 181
I + E P A G L + + +++ ++ ++HGL LH+D A +
Sbjct: 248 RQIGMAEAEGAVPFL-------VSATSGTTVLGAFDPLEAIADVCQRHGLWLHVDAA--W 298
Query: 182 NAAVALGVPVRRL---VQAADSASVCLSKGLGA 211
+V L R L +Q ADS + K L A
Sbjct: 299 GGSVLLSQTHRHLLDGIQRADSVAWNPHKLLAA 331
>pdb|3MKJ|A Chain A, Methionine Gamma-Lyase From Citrobacter Freundii With
Pyridoximine-5'- Phosphate
Length = 398
Score = 37.0 bits (84), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 56/207 (27%), Positives = 89/207 (42%), Gaps = 28/207 (13%)
Query: 37 DPTAFRLETEMAKVMGKEAGLFVPSGTMGNLISVLVHCETRGSEVILGDNSHIHIYENGG 96
+PT LE ++A + EAGL SG ++L C+ GD HI
Sbjct: 63 NPTTDALEKKLAVLERGEAGLATASGISAITTTLLTLCQQ-------GD----HIVSASA 111
Query: 97 ISTIGGVHPRTVKNNQDGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGGRCLSV 156
I G H + +++ ++AA + + P T+++ +E T AN LS+
Sbjct: 112 I--YGXTHAFLSHSMPKFGINVSFVDAAKPEEIRAAMRPETKVVYIE-TPANP---TLSL 165
Query: 157 EYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVPVRRLVQAADSASVCLSK---GLGAPV 213
++V IA + G L +D F + + L AD ++K G G +
Sbjct: 166 VDIETVAGIAHQQGALLVVDNT--FMSPYXQ----QPLQLGADIVVHSVTKYINGHGDVI 219
Query: 214 GSVIVGSKEFIKKARR--LRKTLGGGM 238
G +IVG +EFI +AR L+ GG M
Sbjct: 220 GGIIVGKQEFIDQARFVGLKDITGGXM 246
>pdb|3JW9|A Chain A, Crystal Structure Of L-Methionine Gamma-Lyase From
Citrobacter Freundii With S-Ethyl-Cysteine
Length = 398
Score = 35.8 bits (81), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 52/204 (25%), Positives = 86/204 (42%), Gaps = 22/204 (10%)
Query: 37 DPTAFRLETEMAKVMGKEAGLFVPSGTMGNLISVLVHCETRGSEVILGDNSHIHIYENGG 96
+PT LE ++A + EAGL SG ++L C+ GD HI
Sbjct: 63 NPTTDALEKKLAVLERGEAGLATASGISAITTTLLTLCQQ-------GD----HIVSASA 111
Query: 97 ISTIGGVHPRTVKNNQDGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGGRCLSV 156
I G H + +++ ++AA + + P T+++ +E T AN LS+
Sbjct: 112 I--YGCTHAFLSHSMPKFGINVSFVDAAKPEEIRAAMRPETKVVYIE-TPAN---PTLSL 165
Query: 157 EYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVPVRRLVQAADSASVCLSKGLGAPVGSV 216
++V IA + G L +D + + P++ + G G +G +
Sbjct: 166 VDIETVAGIAHQQGALLVVDNTFM---SPYCQQPLQLGADIVVHSVTXYINGHGDVIGGI 222
Query: 217 IVGSKEFIKKARR--LRKTLGGGM 238
IVG +EFI +AR L+ GG M
Sbjct: 223 IVGKQEFIDQARFVGLKDITGGCM 246
>pdb|3JWA|A Chain A, Crystal Structure Of L-Methionine Gamma-Lyase From
Citrobacter Freundii With Methionine Phosphinate
pdb|3JWB|A Chain A, Crystal Structure Of L-Methionine Gamma-Lyase From
Citrobacter Freundii With Norleucine
Length = 398
Score = 35.8 bits (81), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 52/204 (25%), Positives = 86/204 (42%), Gaps = 22/204 (10%)
Query: 37 DPTAFRLETEMAKVMGKEAGLFVPSGTMGNLISVLVHCETRGSEVILGDNSHIHIYENGG 96
+PT LE ++A + EAGL SG ++L C+ GD HI
Sbjct: 63 NPTTDALEKKLAVLERGEAGLATASGISAITTTLLTLCQQ-------GD----HIVSASA 111
Query: 97 ISTIGGVHPRTVKNNQDGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGGRCLSV 156
I G H + +++ ++AA + + P T+++ +E T AN LS+
Sbjct: 112 I--YGCTHAFLSHSMPKFGINVSFVDAAKPEEIRAAMRPETKVVYIE-TPAN---PTLSL 165
Query: 157 EYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVPVRRLVQAADSASVCLSKGLGAPVGSV 216
++V IA + G L +D + + P++ + G G +G +
Sbjct: 166 VDIETVAGIAHQQGALLVVDNTFM---SPYCQQPLQLGADIVVHSVTXYINGHGDVIGGI 222
Query: 217 IVGSKEFIKKARR--LRKTLGGGM 238
IVG +EFI +AR L+ GG M
Sbjct: 223 IVGKQEFIDQARFVGLKDITGGCM 246
>pdb|2OGE|A Chain A, X-Ray Structure Of S. Venezuelae Desv In Its Internal
Aldimine Form
pdb|2OGE|B Chain B, X-Ray Structure Of S. Venezuelae Desv In Its Internal
Aldimine Form
pdb|2OGE|C Chain C, X-Ray Structure Of S. Venezuelae Desv In Its Internal
Aldimine Form
pdb|2OGE|D Chain D, X-Ray Structure Of S. Venezuelae Desv In Its Internal
Aldimine Form
Length = 399
Score = 35.4 bits (80), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 60/238 (25%), Positives = 93/238 (39%), Gaps = 44/238 (18%)
Query: 78 GSEVILGDNSHIHIYENGGISTIGGVHPRTVKNNQD-GTMDIDLIEAAIRDPKGEIVYPT 136
G EVI+ SH +I +S G P V+ ++D T+D L+E AI P
Sbjct: 103 GDEVIV--PSHTYIASWLAVSATGAT-PVPVEPHEDHPTLDPLLVEKAIT--------PR 151
Query: 137 TRLICLENTHANCGGRCLSVEYTDSVGEIAKKHGLKLHID-----GARIFNAAVALGVPV 191
TR + + + + D++ E+A +HGL + D GAR + G V
Sbjct: 152 TRALLPVHLYGHPAD-------MDALRELADRHGLHIVEDAAQAHGARYRGRRIGAGSSV 204
Query: 192 RRLVQAADSASVCLSKGLGAPVGSVIVGSKEFIKKARRLRKTLGGGMRQXXXXXXXXXXX 251
C G G+V+ G E ++ R LR G RQ
Sbjct: 205 AAFSFYPGXNLGCFGDG-----GAVVTGDPELAERLRMLRNY---GSRQKYSHETKGTNS 256
Query: 252 XQENV--------LVMLDG-DHKKAKLLAE---GLNQLKGLRVDVDAVETNIVYFEIT 297
+ + L LD + +++ L AE GL L G+ + V A +T+ V+ T
Sbjct: 257 RLDEMQAAVLRIRLAHLDSWNGRRSALAAEYLSGLAGLPGIGLPVTAPDTDPVWHLFT 314
>pdb|2OGA|A Chain A, X-Ray Crystal Structure Of S. Venezuelae Desv In Complex
With Ketimine Intermediate
pdb|2OGA|B Chain B, X-Ray Crystal Structure Of S. Venezuelae Desv In Complex
With Ketimine Intermediate
pdb|2OGA|C Chain C, X-Ray Crystal Structure Of S. Venezuelae Desv In Complex
With Ketimine Intermediate
pdb|2OGA|D Chain D, X-Ray Crystal Structure Of S. Venezuelae Desv In Complex
With Ketimine Intermediate
Length = 399
Score = 35.4 bits (80), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 66/239 (27%), Positives = 100/239 (41%), Gaps = 46/239 (19%)
Query: 78 GSEVILGDNSHIHIYENGGISTIGGVHPRTVKNNQD-GTMDIDLIEAAIRDPKGEIVYPT 136
G EVI+ SH +I +S G P V+ ++D T+D L+E AI P
Sbjct: 103 GDEVIV--PSHTYIASWLAVSATGAT-PVPVEPHEDHPTLDPLLVEKAIT--------PR 151
Query: 137 TRLICLENTHANCGGRCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVPVR-RLV 195
TR + + + + D++ E+A +HG LHI + +AA A G R R +
Sbjct: 152 TRALLPVHLYGHPAD-------MDALRELADRHG--LHI----VEDAAQAHGARYRGRRI 198
Query: 196 QAADSA---SVCLSKGLG--APVGSVIVGSKEFIKKARRLRKTLGGGMRQXXXXXXXXXX 250
A S S K LG G+V+ G E ++ R LR G RQ
Sbjct: 199 GAGSSVAAFSFYPGKNLGCFGDGGAVVTGDPELAERLRMLRNY---GSRQKYSHETKGTN 255
Query: 251 XXQENV--------LVMLDG-DHKKAKLLAE---GLNQLKGLRVDVDAVETNIVYFEIT 297
+ + L LD + +++ L AE GL L G+ + V A +T+ V+ T
Sbjct: 256 SRLDEMQAAVLRIRLAHLDSWNGRRSALAAEYLSGLAGLPGIGLPVTAPDTDPVWHLFT 314
>pdb|3K40|A Chain A, Crystal Structure Of Drosophila 3,4-Dihydroxyphenylalanine
Decarboxylase
pdb|3K40|B Chain B, Crystal Structure Of Drosophila 3,4-Dihydroxyphenylalanine
Decarboxylase
Length = 475
Score = 35.4 bits (80), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 56/119 (47%), Gaps = 14/119 (11%)
Query: 84 GDNSHIHIYENGGISTIGGVHPRTVKNNQDGTMDIDLIEAAIRDPKGEIVYPTTRLICLE 143
D +H + E G+ +GGV R+V++ ++ M +E AI E + P ++ L
Sbjct: 188 SDQAHSSV-ERAGL--LGGVKLRSVQS-ENHRMRGAALEKAIEQDVAEGLIPFYAVVTLG 243
Query: 144 NTHANCGGRCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVP-VRRLVQAADSA 201
T++ + +Y D G + KH L +H+D A A A P R L++ +SA
Sbjct: 244 TTNS------CAFDYLDECGPVGNKHNLWIHVDAAY---AGSAFICPEYRHLMKGIESA 293
>pdb|2RFV|A Chain A, High Resolution Structure Of L-Methionine Gamma-Lyase From
Citrobacter Freundii
Length = 398
Score = 35.0 bits (79), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 52/204 (25%), Positives = 86/204 (42%), Gaps = 22/204 (10%)
Query: 37 DPTAFRLETEMAKVMGKEAGLFVPSGTMGNLISVLVHCETRGSEVILGDNSHIHIYENGG 96
+PT LE ++A + EAGL SG ++L C+ GD HI
Sbjct: 63 NPTTDALEKKLAVLERGEAGLATASGISAITTTLLTLCQQ-------GD----HIVSASA 111
Query: 97 ISTIGGVHPRTVKNNQDGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGGRCLSV 156
I G H + +++ ++AA + + P T+++ +E T AN LS+
Sbjct: 112 I--YGCTHAFLSHSMPKFGINVRFVDAAKPEEIRAAMRPETKVVYIE-TPAN---PTLSL 165
Query: 157 EYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVPVRRLVQAADSASVCLSKGLGAPVGSV 216
++V IA + G L +D + + P++ + G G +G +
Sbjct: 166 VDIETVAGIAHQQGALLVVDNTFM---SPYCQQPLQLGADIVVHSVTXYINGHGDVIGGI 222
Query: 217 IVGSKEFIKKARR--LRKTLGGGM 238
IVG +EFI +AR L+ GG M
Sbjct: 223 IVGKQEFIDQARFVGLKDITGGCM 246
>pdb|1ORD|A Chain A, Crystallographic Structure Of A Plp-Dependent Ornithine
Decarboxylase From Lactobacillus 30a To 3.1 Angstroms
Resolution
pdb|1ORD|B Chain B, Crystallographic Structure Of A Plp-Dependent Ornithine
Decarboxylase From Lactobacillus 30a To 3.1 Angstroms
Resolution
Length = 730
Score = 34.7 bits (78), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 52/115 (45%), Gaps = 9/115 (7%)
Query: 20 MRAAMASAEVD-DDVLMHDPTAFRLETEMAKVMGKEAGLFVPSGTMGNLISVLVHCETRG 78
RA + +A+V D+L+H+ A E A+V + FV G+ +V + G
Sbjct: 154 FRADLCNADVALGDLLIHEGPAVAAEKHAARVYNADKTYFVLGGSSNANNTVTSALVSNG 213
Query: 79 SEVILGDNSHIHIYENGGISTIGGVHPRTVKNNQD------GTMDIDLIEAAIRD 127
V+ N+H +Y N ++ GG P ++ N++ G D D E IR+
Sbjct: 214 DLVLFDRNNHKSVY-NSALAMAGG-RPVYLQTNRNPYGFIGGIYDSDFDEKKIRE 266
>pdb|1C4K|A Chain A, Ornithine Decarboxylase Mutant (Gly121tyr)
Length = 730
Score = 34.7 bits (78), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 52/115 (45%), Gaps = 9/115 (7%)
Query: 20 MRAAMASAEVD-DDVLMHDPTAFRLETEMAKVMGKEAGLFVPSGTMGNLISVLVHCETRG 78
RA + +A+V D+L+H+ A E A+V + FV G+ +V + G
Sbjct: 154 FRADLCNADVALGDLLIHEGPAVAAEKHAARVYNADKTYFVLGGSSNANNTVTSALVSNG 213
Query: 79 SEVILGDNSHIHIYENGGISTIGGVHPRTVKNNQD------GTMDIDLIEAAIRD 127
V+ N+H +Y N ++ GG P ++ N++ G D D E IR+
Sbjct: 214 DLVLFDRNNHKSVY-NSALAMAGG-RPVYLQTNRNPYGFIGGIYDSDFDEKKIRE 266
>pdb|2QMA|A Chain A, Crystal Structure Of Glutamate Decarboxylase Domain Of
Diaminobutyrate-Pyruvate Transaminase And
L-2,4-Diaminobutyrate Decarboxylase From Vibrio
Parahaemolyticus
pdb|2QMA|B Chain B, Crystal Structure Of Glutamate Decarboxylase Domain Of
Diaminobutyrate-Pyruvate Transaminase And
L-2,4-Diaminobutyrate Decarboxylase From Vibrio
Parahaemolyticus
Length = 497
Score = 34.7 bits (78), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 61/149 (40%), Gaps = 12/149 (8%)
Query: 81 VILGDNSHIHIYENGGISTIGGVHPRTVKNNQDGTMDIDLIEAAIRDPKGEIVYPTTRLI 140
++ SH + ++ +G TV N DGT DI ++ I K E + P +
Sbjct: 205 IVCSKKSHFTVQKSASWXGLGEKAVXTVDANADGTXDITKLDEVIAQAKAEGLIPFAIVG 264
Query: 141 CLENTHANCGGRCLSVEYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVPVRRL--VQAA 198
T +++ D + + A KH H+DGA + A+ L RL V+ A
Sbjct: 265 TAGTTDHG------AIDDLDFIADXAVKHDXWXHVDGA--YGGALILSSHKSRLKGVERA 316
Query: 199 DSASVCLSKGLGAPV--GSVIVGSKEFIK 225
S SV K + G+++V K K
Sbjct: 317 HSISVDFHKLFYQTISCGALLVNDKSNFK 345
>pdb|1Y4I|A Chain A, Crystal Structure Of Citrobacter Freundii
L-Methionine-Lyase
Length = 398
Score = 33.5 bits (75), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 51/204 (25%), Positives = 85/204 (41%), Gaps = 22/204 (10%)
Query: 37 DPTAFRLETEMAKVMGKEAGLFVPSGTMGNLISVLVHCETRGSEVILGDNSHIHIYENGG 96
+PT LE ++A + EAGL SG ++L C+ GD HI
Sbjct: 63 NPTTDALEKKLAVLERGEAGLATASGISAITTTLLTLCQQ-------GD----HIVSASA 111
Query: 97 ISTIGGVHPRTVKNNQDGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGGRCLSV 156
I G H + +++ ++A + + P T+++ +E T AN LS+
Sbjct: 112 I--YGCTHAFLSHSMPKFGINVRFVDAGKPEEIRAAMRPETKVVYIE-TPAN---PTLSL 165
Query: 157 EYTDSVGEIAKKHGLKLHIDGARIFNAAVALGVPVRRLVQAADSASVCLSKGLGAPVGSV 216
++V IA + G L +D + + P++ + G G +G +
Sbjct: 166 VDIETVAGIAHQQGALLVVDNTFM---SPYCQQPLQLGADIVVHSVTXYINGHGDVIGGI 222
Query: 217 IVGSKEFIKKARR--LRKTLGGGM 238
IVG +EFI +AR L+ GG M
Sbjct: 223 IVGKQEFIDQARFVGLKDITGGCM 246
>pdb|3FPG|A Chain A, Crystal Structure Of E81q Mutant Of Mtnas
pdb|3FPG|B Chain B, Crystal Structure Of E81q Mutant Of Mtnas
pdb|3FPH|A Chain A, Crystal Structure Of E81q Mutant Of Mtnas In Complex With
L-Glutamate
pdb|3FPH|B Chain B, Crystal Structure Of E81q Mutant Of Mtnas In Complex With
L-Glutamate
pdb|3FPJ|A Chain A, Crystal Structure Of E81q Mutant Of Mtnas In Complex With
S- Adenosylmethionine
pdb|3FPJ|B Chain B, Crystal Structure Of E81q Mutant Of Mtnas In Complex With
S- Adenosylmethionine
Length = 298
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 33/77 (42%), Gaps = 16/77 (20%)
Query: 2 VTRTVDLRSDTVTKPTEAMRAAMASAEVDDDVLMHDPTAFRLETEMAKVMGKEAGLFVPS 61
+ R VD + + + MRA + + DDD+ T FR AG+ +PS
Sbjct: 208 IHRYVDTETRIIYRTYTGMRAILYAPVSDDDI-----TGFR-----------RAGVVLPS 251
Query: 62 GTMGNLISVLVHCETRG 78
G + N ++ C +G
Sbjct: 252 GKVNNTSVLVFKCPDKG 268
>pdb|3FPE|A Chain A, Crystal Structure Of Mtnas In Complex With
Thermonicotianamine
pdb|3FPE|B Chain B, Crystal Structure Of Mtnas In Complex With
Thermonicotianamine
pdb|3FPF|A Chain A, Crystal Structure Of Mtnas In Complex With Mta And Tna
pdb|3FPF|B Chain B, Crystal Structure Of Mtnas In Complex With Mta And Tna
Length = 298
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 33/77 (42%), Gaps = 16/77 (20%)
Query: 2 VTRTVDLRSDTVTKPTEAMRAAMASAEVDDDVLMHDPTAFRLETEMAKVMGKEAGLFVPS 61
+ R VD + + + MRA + + DDD+ T FR AG+ +PS
Sbjct: 208 IHRYVDTETRIIYRTYTGMRAILYAPVSDDDI-----TGFR-----------RAGVVLPS 251
Query: 62 GTMGNLISVLVHCETRG 78
G + N ++ C +G
Sbjct: 252 GKVNNTSVLVFKCPDKG 268
>pdb|1VJO|A Chain A, Crystal Structure Of Alanine--Glyoxylate Aminotransferase
(Alr1004) From Nostoc Sp. At 1.70 A Resolution
Length = 393
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 32/73 (43%), Gaps = 6/73 (8%)
Query: 160 DSVGEIAKKHGLKLHIDGARIFNAAVALGVPVRRLVQAADSASVCLSKGLG-APVGSVIV 218
+ VGE+ ++ G L +D GVP+ D A C KGLG +P S
Sbjct: 179 EGVGELCREFGTLLLVDTVTSLG-----GVPIFLDAWGVDLAYSCSQKGLGCSPGASPFT 233
Query: 219 GSKEFIKKARRLR 231
S I+K +R R
Sbjct: 234 XSSRAIEKLQRRR 246
>pdb|2OVS|A Chain A, Crystal Strcuture Of A Type Three Secretion System Protein
pdb|2OVS|B Chain B, Crystal Strcuture Of A Type Three Secretion System Protein
Length = 118
Score = 29.3 bits (64), Expect = 3.4, Method: Composition-based stats.
Identities = 16/58 (27%), Positives = 29/58 (50%), Gaps = 5/58 (8%)
Query: 30 DDDVLMHDPTAFRLETEMAKVMGKEAG--LFVPSGTMGNLISVLVHCETRGSEVILGD 85
D+D+++H R E+ V+ E L +P + N ++ +HC RG+E + D
Sbjct: 54 DEDIILH---VHRYNYEIPSVLNIEQDYQLVIPKKVLSNDNNLTLHCHVRGNEKLFVD 108
>pdb|3E3C|A Chain A, Structure Of Grlr-Lipid Complex
pdb|3E3C|B Chain B, Structure Of Grlr-Lipid Complex
Length = 118
Score = 29.3 bits (64), Expect = 3.4, Method: Composition-based stats.
Identities = 16/58 (27%), Positives = 29/58 (50%), Gaps = 5/58 (8%)
Query: 30 DDDVLMHDPTAFRLETEMAKVMGKEAG--LFVPSGTMGNLISVLVHCETRGSEVILGD 85
D+D+++H R E+ V+ E L +P + N ++ +HC RG+E + D
Sbjct: 54 DEDIILH---VHRYNYEIPSVLNIEQDYQLVIPKKVLSNDNNLTLHCHVRGNEKLFVD 108
>pdb|3RCH|A Chain A, Crystal Structure Of Human Aromatic L-Amino Acid
Decarboxylase (Aadc) In The Open Conformation With Llp
And Plp Bound To Chain-A And Chain- B Respectively
Length = 480
Score = 29.3 bits (64), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 40/94 (42%), Gaps = 9/94 (9%)
Query: 85 DNSHIHIYENGGISTIGGVHPRTVKNNQDGTMDIDLIEAAIRDPKGEIVYPTTRLICLEN 144
D +H + E G+ IGGV + + ++ + M ++ A+ K + P + L
Sbjct: 189 DQAHSSV-ERAGL--IGGVKLKAIPSDGNFAMRASALQEALERDKAAGLIPFFMVATLGT 245
Query: 145 THANCGGRCLSVEYTDSVGEIAKKHGLKLHIDGA 178
T C S + VG I K + LH+D A
Sbjct: 246 T------TCCSFDNLLEVGPICNKEDIWLHVDAA 273
>pdb|3RBF|A Chain A, Crystal Structure Of Human Aromatic L-Amino Acid
Decarboxylase (Aadc) In The Apo Form
pdb|3RBF|B Chain B, Crystal Structure Of Human Aromatic L-Amino Acid
Decarboxylase (Aadc) In The Apo Form
pdb|3RBL|A Chain A, Crystal Structure Of Human Aromatic L-Amino Acid
Decarboxylase (Aadc) In The Apo Form
pdb|3RBL|B Chain B, Crystal Structure Of Human Aromatic L-Amino Acid
Decarboxylase (Aadc) In The Apo Form
pdb|3RCH|B Chain B, Crystal Structure Of Human Aromatic L-Amino Acid
Decarboxylase (Aadc) In The Open Conformation With Llp
And Plp Bound To Chain-A And Chain- B Respectively
Length = 480
Score = 29.3 bits (64), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 40/94 (42%), Gaps = 9/94 (9%)
Query: 85 DNSHIHIYENGGISTIGGVHPRTVKNNQDGTMDIDLIEAAIRDPKGEIVYPTTRLICLEN 144
D +H + E G+ IGGV + + ++ + M ++ A+ K + P + L
Sbjct: 189 DQAHSSV-ERAGL--IGGVKLKAIPSDGNFAMRASALQEALERDKAAGLIPFFMVATLGT 245
Query: 145 THANCGGRCLSVEYTDSVGEIAKKHGLKLHIDGA 178
T C S + VG I K + LH+D A
Sbjct: 246 T------TCCSFDNLLEVGPICNKEDIWLHVDAA 273
>pdb|1C7G|A Chain A, Tyrosine Phenol-Lyase From Erwinia Herbicola
pdb|1C7G|B Chain B, Tyrosine Phenol-Lyase From Erwinia Herbicola
pdb|1C7G|C Chain C, Tyrosine Phenol-Lyase From Erwinia Herbicola
pdb|1C7G|D Chain D, Tyrosine Phenol-Lyase From Erwinia Herbicola
Length = 456
Score = 28.9 bits (63), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 34/67 (50%), Gaps = 6/67 (8%)
Query: 114 GTMDIDLIEAAIRDPKGE-IVYPTTRLICLENTHANCGGRCLSVEYTDSVGEIAKKHGLK 172
G +D++ + I++ E I Y ICL T GG+ +S+ +V E+A +G+K
Sbjct: 156 GDIDLNKLATLIKEKGAENIAY-----ICLAVTVNLAGGQPVSMANMRAVHEMASTYGIK 210
Query: 173 LHIDGAR 179
+ D R
Sbjct: 211 IFYDATR 217
>pdb|3VP6|A Chain A, Structural Characterization Of Glutamic Acid
Decarboxylase; Insights Into The Mechanism Of
Autoinactivation
pdb|3VP6|B Chain B, Structural Characterization Of Glutamic Acid
Decarboxylase; Insights Into The Mechanism Of
Autoinactivation
Length = 511
Score = 28.9 bits (63), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 30/137 (21%), Positives = 54/137 (39%), Gaps = 21/137 (15%)
Query: 56 GLFVPSGTMGNLISVLV-------HCETRGSEVI------LGDNSHIHIYENGGISTIGG 102
G+F P G + N+ S++ +T+G + + SH I + G G
Sbjct: 157 GIFSPGGAISNMYSIMAARYKYFPEVKTKGMAAVPKLVLFTSEQSHYSIKKAGAALGFGT 216
Query: 103 VHPRTVKNNQDGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGGRCL-SVEYTDS 161
+ +K N+ G + EA I + K + P +A G + +
Sbjct: 217 DNVILIKCNERGKIIPADFEAKILEAKQKGYVPFY-------VNATAGTTVYGAFDPIQE 269
Query: 162 VGEIAKKHGLKLHIDGA 178
+ +I +K+ L LH+D A
Sbjct: 270 IADICEKYNLWLHVDAA 286
>pdb|2OKJ|A Chain A, The X-Ray Crystal Structure Of The 67kda Isoform Of
Glutamic Acid Decarboxylase (Gad67)
pdb|2OKJ|B Chain B, The X-Ray Crystal Structure Of The 67kda Isoform Of
Glutamic Acid Decarboxylase (Gad67)
Length = 504
Score = 28.5 bits (62), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 30/137 (21%), Positives = 54/137 (39%), Gaps = 21/137 (15%)
Query: 56 GLFVPSGTMGNLISVLV-------HCETRGSEVI------LGDNSHIHIYENGGISTIGG 102
G+F P G + N+ S++ +T+G + + SH I + G G
Sbjct: 154 GIFSPGGAISNMYSIMAARYKYFPEVKTKGMAAVPKLVLFTSEQSHYSIKKAGAALGFGT 213
Query: 103 VHPRTVKNNQDGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGGRCL-SVEYTDS 161
+ +K N+ G + EA I + K + P +A G + +
Sbjct: 214 DNVILIKCNERGKIIPADFEAKILEAKQKGYVPFY-------VNATAGTTVYGAFDPIQE 266
Query: 162 VGEIAKKHGLKLHIDGA 178
+ +I +K+ L LH+D A
Sbjct: 267 IADICEKYNLWLHVDAA 283
>pdb|2V1P|A Chain A, Crystal Structure Of The Apo Form Of Y74f Mutant E. Coli
Tryptophanase
Length = 467
Score = 28.5 bits (62), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 44/192 (22%), Positives = 77/192 (40%), Gaps = 25/192 (13%)
Query: 6 VDLRSDTVTKP-TEAMRAAMASAEVDDDVLMHDPTAFRLETEMAKVMGKEAGLFVPSGTM 64
+DL +D+ T T++M+AAM D+ + + L + + G + + G
Sbjct: 44 IDLLTDSGTGAVTQSMQAAMMRG---DEAFSGSRSYYALAESVKNIFGYQYTIPTHQGRG 100
Query: 65 GNLISVLVHCETRGSEVILGDNSHIHIYEN------GGISTIGGVHPRTV---------- 108
I + V + R E L D S + + N G S I G R V
Sbjct: 101 AEQIYIPVLIKKREQEKGL-DRSKMVAFSNYFFDTTQGHSQINGCTVRNVYIKEAFDTGV 159
Query: 109 KNNQDGTMDIDLIEAAIRDPKGEIVYPTTRLICLENTHANCGGRCLSVEYTDSVGEIAKK 168
+ + G D++ +E I E+ I T + GG+ +S+ ++ IAKK
Sbjct: 160 RYDFKGNFDLEGLERGIE----EVGPNNVPYIVATITSNSAGGQPVSLANLKAMYSIAKK 215
Query: 169 HGLKLHIDGARI 180
+ + + +D AR
Sbjct: 216 YDIPVVMDSARF 227
>pdb|3CDD|A Chain A, Crystal Structure Of Prophage Muso2, 43 Kda Tail Protein
From Shewanella Oneidensis
pdb|3CDD|B Chain B, Crystal Structure Of Prophage Muso2, 43 Kda Tail Protein
From Shewanella Oneidensis
pdb|3CDD|C Chain C, Crystal Structure Of Prophage Muso2, 43 Kda Tail Protein
From Shewanella Oneidensis
pdb|3CDD|D Chain D, Crystal Structure Of Prophage Muso2, 43 Kda Tail Protein
From Shewanella Oneidensis
pdb|3CDD|E Chain E, Crystal Structure Of Prophage Muso2, 43 Kda Tail Protein
From Shewanella Oneidensis
pdb|3CDD|F Chain F, Crystal Structure Of Prophage Muso2, 43 Kda Tail Protein
From Shewanella Oneidensis
Length = 361
Score = 28.5 bits (62), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 21/41 (51%)
Query: 46 EMAKVMGKEAGLFVPSGTMGNLISVLVHCETRGSEVILGDN 86
E+ + K+ G+ + S T GNL+ G +ILGDN
Sbjct: 157 ELLARLAKQRGVLLTSDTFGNLVITRASKTKAGVSLILGDN 197
>pdb|2YCN|A Chain A, Y71f Mutant Of Tyrosine Phenol-Lyase From Citrobacter
Freundii In Complex With Quinonoid Intermediate Formed
With 3-Fluoro-L-Tyrosine
pdb|2YCN|B Chain B, Y71f Mutant Of Tyrosine Phenol-Lyase From Citrobacter
Freundii In Complex With Quinonoid Intermediate Formed
With 3-Fluoro-L-Tyrosine
Length = 456
Score = 28.1 bits (61), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 34/68 (50%), Gaps = 8/68 (11%)
Query: 114 GTMDIDLIEAAIRDPKG--EIVYPTTRLICLENTHANCGGRCLSVEYTDSVGEIAKKHGL 171
G +D+ ++ I D KG I Y ICL T GG+ +S+ +V E+ + HG+
Sbjct: 156 GDIDLKKLQKLI-DEKGAENIAY-----ICLAVTVNLAGGQPVSMANMRAVRELTEAHGI 209
Query: 172 KLHIDGAR 179
K+ D R
Sbjct: 210 KVFYDATR 217
>pdb|2EZ1|A Chain A, Holo Tyrosine Phenol-Lyase From Citrobacter Freundii At Ph
8.0
pdb|2EZ1|B Chain B, Holo Tyrosine Phenol-Lyase From Citrobacter Freundii At Ph
8.0
pdb|2VLH|B Chain B, Quinonoid Intermediate Of Citrobacter Freundii Tyrosine
Phenol-Lyase Formed With Methionine
Length = 456
Score = 28.1 bits (61), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 34/68 (50%), Gaps = 8/68 (11%)
Query: 114 GTMDIDLIEAAIRDPKG--EIVYPTTRLICLENTHANCGGRCLSVEYTDSVGEIAKKHGL 171
G +D+ ++ I D KG I Y ICL T GG+ +S+ +V E+ + HG+
Sbjct: 156 GDIDLKKLQKLI-DEKGAENIAY-----ICLAVTVNLAGGQPVSMANMRAVRELTEAHGI 209
Query: 172 KLHIDGAR 179
K+ D R
Sbjct: 210 KVFYDATR 217
>pdb|2EZ2|A Chain A, Apo Tyrosine Phenol-Lyase From Citrobacter Freundii At Ph
8.0
pdb|2EZ2|B Chain B, Apo Tyrosine Phenol-Lyase From Citrobacter Freundii At Ph
8.0
pdb|2VLF|A Chain A, Quinonoid Intermediate Of Citrobacter Freundii Tyrosine
Phenol-Lyase Formed With Alanine
pdb|2VLF|B Chain B, Quinonoid Intermediate Of Citrobacter Freundii Tyrosine
Phenol-Lyase Formed With Alanine
pdb|2VLH|A Chain A, Quinonoid Intermediate Of Citrobacter Freundii Tyrosine
Phenol-Lyase Formed With Methionine
pdb|2YCT|A Chain A, Tyrosine Phenol-Lyase From Citrobacter Freundii In Complex
With Pyridine N-Oxide And The Quinonoid Intermediate
Formed With L-Alanine
pdb|2YCT|B Chain B, Tyrosine Phenol-Lyase From Citrobacter Freundii In Complex
With Pyridine N-Oxide And The Quinonoid Intermediate
Formed With L-Alanine
Length = 456
Score = 28.1 bits (61), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 34/68 (50%), Gaps = 8/68 (11%)
Query: 114 GTMDIDLIEAAIRDPKG--EIVYPTTRLICLENTHANCGGRCLSVEYTDSVGEIAKKHGL 171
G +D+ ++ I D KG I Y ICL T GG+ +S+ +V E+ + HG+
Sbjct: 156 GDIDLKKLQKLI-DEKGAENIAY-----ICLAVTVNLAGGQPVSMANMRAVRELTEAHGI 209
Query: 172 KLHIDGAR 179
K+ D R
Sbjct: 210 KVFYDATR 217
>pdb|2YCP|A Chain A, F448h Mutant Of Tyrosine Phenol-Lyase From Citrobacter
Freundii In Complex With Quinonoid Intermediate Formed
With 3-Fluoro-L-Tyrosine
pdb|2YCP|B Chain B, F448h Mutant Of Tyrosine Phenol-Lyase From Citrobacter
Freundii In Complex With Quinonoid Intermediate Formed
With 3-Fluoro-L-Tyrosine
pdb|2YCP|C Chain C, F448h Mutant Of Tyrosine Phenol-Lyase From Citrobacter
Freundii In Complex With Quinonoid Intermediate Formed
With 3-Fluoro-L-Tyrosine
pdb|2YCP|D Chain D, F448h Mutant Of Tyrosine Phenol-Lyase From Citrobacter
Freundii In Complex With Quinonoid Intermediate Formed
With 3-Fluoro-L-Tyrosine
Length = 456
Score = 27.7 bits (60), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 34/68 (50%), Gaps = 8/68 (11%)
Query: 114 GTMDIDLIEAAIRDPKG--EIVYPTTRLICLENTHANCGGRCLSVEYTDSVGEIAKKHGL 171
G +D+ ++ I D KG I Y ICL T GG+ +S+ +V E+ + HG+
Sbjct: 156 GDIDLKKLQKLI-DEKGAENIAY-----ICLAVTVNLAGGQPVSMANMRAVRELTEAHGI 209
Query: 172 KLHIDGAR 179
K+ D R
Sbjct: 210 KVFYDATR 217
>pdb|2EB0|A Chain A, Crystal Structure Of Methanococcus Jannaschii Putative
Family Ii Inorganic Pyrophosphatase
pdb|2EB0|B Chain B, Crystal Structure Of Methanococcus Jannaschii Putative
Family Ii Inorganic Pyrophosphatase
Length = 307
Score = 27.7 bits (60), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 20/34 (58%)
Query: 24 MASAEVDDDVLMHDPTAFRLETEMAKVMGKEAGL 57
+ SA + D VL PT L+ EMAK + + AG+
Sbjct: 140 LLSAIISDTVLFKSPTTTDLDKEMAKKLAEIAGI 173
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.135 0.385
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,998,155
Number of Sequences: 62578
Number of extensions: 400155
Number of successful extensions: 1094
Number of sequences better than 100.0: 45
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 32
Number of HSP's that attempted gapping in prelim test: 1061
Number of HSP's gapped (non-prelim): 48
length of query: 359
length of database: 14,973,337
effective HSP length: 100
effective length of query: 259
effective length of database: 8,715,537
effective search space: 2257324083
effective search space used: 2257324083
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)