BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 018241
(359 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1JAL|A Chain A, Ychf Protein (Hi0393)
pdb|1JAL|B Chain B, Ychf Protein (Hi0393)
Length = 363
Score = 305 bits (780), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 153/306 (50%), Positives = 212/306 (69%), Gaps = 9/306 (2%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M + GIVGLPNVGKSTLFNA+ + G +AAN+PFCTIEPN G+V +PDPRL L+ + K
Sbjct: 1 MGFKCGIVGLPNVGKSTLFNALTKAG-IEAANYPFCTIEPNTGVVPMPDPRLDALAEIVK 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
++ +P ++EFVDIAGLV GAS+GEGLGNKFL++IRE D+I VVRCFE++DIVHV GK+
Sbjct: 60 PERILPTTMEFVDIAGLVAGASKGEGLGNKFLANIRETDAIGHVVRCFENDDIVHVAGKI 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKL-KKGKAKDSQSKLKEDAEKAALEKIQQALMDG 233
DP D+D IN EL +DLD E+ +++L K+ K D ++K E + +EKI L +
Sbjct: 120 DPLDDIDTINTELALADLDSCERAIQRLQKRAKGGDKEAKF----ELSVMEKILPVLENA 175
Query: 234 KPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 293
RSV L+ E +IK LT+KP +Y+ANV E + NP+++ V +A+ +
Sbjct: 176 GMIRSVGLDKEELQAIKSYNFLTLKPTMYIANVNEDGFEN---NPYLDRVREIAAKEGAV 232
Query: 294 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 353
V + A +E+E+ EL EE+VE+L LG+ E GL +IR+ Y+LL L+TYFT+G KE +A
Sbjct: 233 VVPVCAAIESEIAELDDEEKVEFLQDLGIEEPGLNRVIRAGYALLNLQTYFTAGVKEVRA 292
Query: 354 WTIRAG 359
WT+ G
Sbjct: 293 WTVSVG 298
>pdb|2DWQ|A Chain A, Thermus Thermophilus Ychf Gtp-Binding Protein
pdb|2DWQ|B Chain B, Thermus Thermophilus Ychf Gtp-Binding Protein
Length = 368
Score = 283 bits (724), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 156/308 (50%), Positives = 203/308 (65%), Gaps = 11/308 (3%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLS-GLSKS 115
L GIVGLPNVGKSTLFNA+ A AAN+PF TI+ NVG+V + D RL+ L +K
Sbjct: 2 LAVGIVGLPNVGKSTLFNALT-RANALAANYPFATIDKNVGVVPLEDERLYALQRTFAKG 60
Query: 116 QKA---VPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNG 172
++ VP VEFVDIAGLVKGA +GEGLGN+FL+HIREV +I V+RCF D D+VHV G
Sbjct: 61 ERVPPVVPTHVEFVDIAGLVKGAHKGEGLGNQFLAHIREVAAIAHVLRCFPDPDVVHVMG 120
Query: 173 KVDPKSDVDVINLELVFSDLDQIEKRMEKLKK-GKAKDSQSKLKEDAEKAALEKIQQALM 231
+VDP D +V+ EL+ +DL +E+R+E+L+K +A + L E A E + L
Sbjct: 121 RVDPLEDAEVVETELLLADLATLERRLERLRKEARADRERLPLLE-----AAEGLYVHLQ 175
Query: 232 DGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQ 291
+GKPAR+ ++ +K+ LLT KP+IYVANVAE DL D NP V V A +
Sbjct: 176 EGKPARTFPPSEAVARFLKETPLLTAKPVIYVANVAEEDLPDGRGNPQVEAVRRKALEEG 235
Query: 292 SGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKET 351
+ V +SA++EAEL EL EE E LA+ G+ ESGL L R+ Y L L T+FT+GEKE
Sbjct: 236 AEVVVVSARLEAELAELSGEEARELLAAYGLQESGLQRLARAGYRALDLLTFFTAGEKEV 295
Query: 352 KAWTIRAG 359
+AWT+R G
Sbjct: 296 RAWTVRRG 303
>pdb|2DBY|A Chain A, Crystal Structure Of The Gtp-Binding Protein Ychf In
Complexed With Gdp
Length = 368
Score = 283 bits (723), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 156/308 (50%), Positives = 203/308 (65%), Gaps = 11/308 (3%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLS-GLSKS 115
L GIVGLPNVGKSTLFNA+ A AAN+PF TI+ NVG+V + D RL+ L +K
Sbjct: 2 LAVGIVGLPNVGKSTLFNALT-RANALAANYPFATIDKNVGVVPLEDERLYALQRTFAKG 60
Query: 116 QKA---VPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNG 172
++ VP VEFVDIAGLVKGA +GEGLGN+FL+HIREV +I V+RCF D D+VHV G
Sbjct: 61 ERVPPVVPTHVEFVDIAGLVKGAHKGEGLGNQFLAHIREVAAIAHVLRCFPDPDVVHVMG 120
Query: 173 KVDPKSDVDVINLELVFSDLDQIEKRMEKLKK-GKAKDSQSKLKEDAEKAALEKIQQALM 231
+VDP D +V+ EL+ +DL +E+R+E+L+K +A + L E A E + L
Sbjct: 121 RVDPLEDAEVVETELLLADLATLERRLERLRKEARADRERLPLLE-----AAEGLYVHLQ 175
Query: 232 DGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQ 291
+GKPAR+ ++ +K+ LLT KP+IYVANVAE DL D NP V V A +
Sbjct: 176 EGKPARTFPPSEAVARFLKETPLLTAKPVIYVANVAEEDLPDGRGNPQVEAVRRKALEEG 235
Query: 292 SGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKET 351
+ V +SA++EAEL EL EE E LA+ G+ ESGL L R+ Y L L T+FT+GEKE
Sbjct: 236 AEVVVVSARLEAELAELSGEEARELLAAYGLQESGLQRLARAGYRALDLLTFFTAGEKEV 295
Query: 352 KAWTIRAG 359
+AWT+R G
Sbjct: 296 RAWTVRRG 303
>pdb|2OHF|A Chain A, Crystal Structure Of Human Ola1 In Complex With Amppcp
Length = 396
Score = 224 bits (570), Expect = 8e-59, Method: Compositional matrix adjust.
Identities = 129/312 (41%), Positives = 181/312 (58%), Gaps = 9/312 (2%)
Query: 52 KISMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSG 111
+ SL+ GIVGLPNVGKST FN V+ N +A A NFPFCTI+PN V VPD R L
Sbjct: 18 RFGTSLKIGIVGLPNVGKSTFFN-VLTNSQASAENFPFCTIDPNESRVPVPDERFDFLCQ 76
Query: 112 LSKSQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVN 171
K +PA + VDIAGLVKGA G+GLGN FLSHI D I + R FED+DI HV
Sbjct: 77 YHKPASKIPAFLNVVDIAGLVKGAHNGQGLGNAFLSHISACDGIFHLTRAFEDDDITHVE 136
Query: 172 GKVDPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALM 231
G VDP D+++I+ EL D + I ++KL+K + KLK E + K++ ++
Sbjct: 137 GSVDPIRDIEIIHEELQLKDEEMIGPIIDKLEKVAVRGGDKKLK--PEYDIMCKVKSWVI 194
Query: 232 D-GKPARSV-TLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASD 289
D KP R ND E + + + LT KP++Y+ N++E D N + ++
Sbjct: 195 DQKKPVRFYHDWNDKEIEVLNKHLFLTSKPMVYLVNLSEKDYIR-KKNKWLIKIKEWVDK 253
Query: 290 LQSGRVTI--SAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSG 347
G + I S +E +L EL +EER +YL + +++S L +I++ ++ L L +FT+G
Sbjct: 254 YDPGALVIPFSGALELKLQELSAEERQKYLEA-NMTQSALPKIIKAGFAALQLEYFFTAG 312
Query: 348 EKETKAWTIRAG 359
E +AWTIR G
Sbjct: 313 PDEVRAWTIRKG 324
>pdb|1NI3|A Chain A, Structure Of The Schizosaccharomyces Pombe Ychf Gtpase
Length = 392
Score = 215 bits (548), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 128/310 (41%), Positives = 179/310 (57%), Gaps = 9/310 (2%)
Query: 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKS 115
+L+ GIVG PNVGKST F A+ ++ AN+P+ TI+P VAVPD R L K
Sbjct: 20 NLKTGIVGXPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKP 79
Query: 116 QKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVD 175
+ VPA + DIAGL KGAS G GLGN FLSH+R VD+I QVVR F+D +I+HV G VD
Sbjct: 80 KSRVPAFLTVFDIAGLTKGASTGVGLGNAFLSHVRAVDAIYQVVRAFDDAEIIHVEGDVD 139
Query: 176 PKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDS---QSKLKEDAEKAALEKIQQALMD 232
P D+ +I EL+ D + +EK +E L+K ++ + + K K++ E+A +EK+ Q L +
Sbjct: 140 PIRDLSIIVDELLIKDAEFVEKHLEGLRKITSRGANTLEXKAKKE-EQAIIEKVYQYLTE 198
Query: 233 GK-PARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQ 291
K P R ++ E + I L LLT KP+IY+ N +E D N ++ ++ +
Sbjct: 199 TKQPIRKGDWSNREVEIINSLYLLTAKPVIYLVNXSERDFLRQ-KNKYLPKIKKWIDENS 257
Query: 292 SGRVTI--SAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEK 349
G I S E LT EE +E L ++S L +I + Y+ L L YFT GE
Sbjct: 258 PGDTLIPXSVAFEERLTNFTEEEAIEECKKLN-TKSXLPKIIVTGYNALNLINYFTCGED 316
Query: 350 ETKAWTIRAG 359
E ++WTIR G
Sbjct: 317 EVRSWTIRKG 326
>pdb|1WXQ|A Chain A, Crystal Structure Of Gtp Binding Protein From Pyrococcus
Horikoshii Ot3
Length = 397
Score = 76.6 bits (187), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 51/131 (38%), Positives = 69/131 (52%), Gaps = 29/131 (22%)
Query: 60 GIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAV------------PDPR-L 106
G+VG PNVGKST F+A + AN+PF TIE NVG+ P+P+
Sbjct: 4 GVVGKPNVGKSTFFSAATLV-DVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNY 62
Query: 107 HVLSGLSKSQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDND 166
+GL+ +P V+ VD+AGLV GA +G GLGNKFL +R +++ VV
Sbjct: 63 EYRNGLA----LIP--VKXVDVAGLVPGAHEGRGLGNKFLDDLRXASALIHVVDA----- 111
Query: 167 IVHVNGKVDPK 177
GK DP+
Sbjct: 112 ----TGKTDPE 118
>pdb|1LNZ|A Chain A, Structure Of The Obg Gtp-Binding Protein
pdb|1LNZ|B Chain B, Structure Of The Obg Gtp-Binding Protein
Length = 342
Score = 72.0 bits (175), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 48/128 (37%), Positives = 67/128 (52%), Gaps = 24/128 (18%)
Query: 60 GIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAV 119
G+VG P+VGKSTL +VV + K + A++ F T+ PN+G V D R V +
Sbjct: 162 GLVGFPSVGKSTLL-SVVSSAKPKIADYHFTTLVPNLGXVETDDGRSFVXA--------- 211
Query: 120 PASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPKSD 179
D+ GL++GA QG GLG++FL HI I+ V+ D + G+ DP D
Sbjct: 212 -------DLPGLIEGAHQGVGLGHQFLRHIERTRVIVHVI------DXSGLEGR-DPYDD 257
Query: 180 VDVINLEL 187
IN EL
Sbjct: 258 YLTINQEL 265
>pdb|1UDX|A Chain A, Crystal Structure Of The Conserved Protein Tt1381 From
Thermus Thermophilus Hb8
Length = 416
Score = 65.1 bits (157), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 36/100 (36%), Positives = 54/100 (54%), Gaps = 17/100 (17%)
Query: 60 GIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAV 119
G+VG PN GKS+L A+ + A +PF T+ PN+G+V V + L+
Sbjct: 161 GLVGYPNAGKSSLLAAMT-RAHPKIAPYPFTTLSPNLGVVEVSEEERFTLA--------- 210
Query: 120 PASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVV 159
DI G+++GAS+G+GLG +FL HI +L V+
Sbjct: 211 -------DIPGIIEGASEGKGLGLEFLRHIARTRVLLYVL 243
>pdb|1MKY|A Chain A, Structural Analysis Of The Domain Interactions In Der, A
Switch Protein Containing Two Gtpase Domains
Length = 439
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 44/76 (57%), Gaps = 4/76 (5%)
Query: 52 KISMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVL-- 109
+I+ +++ IVG PNVGKSTLFNA++ +A + P T +P V + D R +V
Sbjct: 176 EITDAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFI-DGRKYVFVD 234
Query: 110 -SGLSKSQKAVPASVE 124
+GL + + P +VE
Sbjct: 235 TAGLRRKSRVEPRTVE 250
Score = 35.0 bits (79), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 16/22 (72%), Positives = 18/22 (81%)
Query: 61 IVGLPNVGKSTLFNAVVENGKA 82
IVG PNVGKSTLFN +V+ KA
Sbjct: 6 IVGRPNVGKSTLFNKLVKKKKA 27
>pdb|4A9A|A Chain A, Structure Of Rbg1 In Complex With Tma46 Dfrp Domain
pdb|4A9A|B Chain B, Structure Of Rbg1 In Complex With Tma46 Dfrp Domain
Length = 376
Score = 41.2 bits (95), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 47/91 (51%), Gaps = 18/91 (19%)
Query: 60 GIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAV 119
G VG P+VGKSTL + + +++AA + F T+ V VP G+ + + A
Sbjct: 76 GFVGFPSVGKSTLLSKLT-GTESEAAEYEFTTL------VTVP--------GVIRYKGA- 119
Query: 120 PASVEFVDIAGLVKGASQGEGLGNKFLSHIR 150
++ +D+ G++ GA G G G + ++ R
Sbjct: 120 --KIQMLDLPGIIDGAKDGRGRGKQVIAVAR 148
>pdb|3A1T|A Chain A, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Gdp Form Ii
pdb|3A1U|A Chain A, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Gmppnp Form
pdb|3A1U|B Chain B, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Gmppnp Form
pdb|3A1V|A Chain A, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Apo Form
pdb|3A1V|B Chain B, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Apo Form
Length = 258
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGI 98
++ + G PNVGK++LFNA+ K AN+P T+E G+
Sbjct: 6 VKVALAGCPNVGKTSLFNALT-GTKQYVANWPGVTVEKKEGV 46
>pdb|3A1S|A Chain A, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Gdp Form I
pdb|3A1S|B Chain B, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Gdp Form I
Length = 258
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGI 98
++ + G PNVGK++LFNA+ K AN+P T+E G+
Sbjct: 6 VKVALAGCPNVGKTSLFNALT-GTKQYVANWPGVTVEKKEGV 46
>pdb|3A1W|A Chain A, Crystal Structue Of The G Domain Of T. Maritima Feob
Iron Iransporter
Length = 168
Score = 37.7 bits (86), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGI 98
++ + G PNVGK++LFNA+ K AN+P T+E G+
Sbjct: 6 VKVALAGCPNVGKTSLFNALT-GTKQYVANWPGVTVEKKEGV 46
>pdb|3IBY|A Chain A, Structure Of Cytosolic Domain Of L. Pneumophila Feob
pdb|3IBY|B Chain B, Structure Of Cytosolic Domain Of L. Pneumophila Feob
pdb|3IBY|C Chain C, Structure Of Cytosolic Domain Of L. Pneumophila Feob
pdb|3IBY|D Chain D, Structure Of Cytosolic Domain Of L. Pneumophila Feob
Length = 256
Score = 37.4 bits (85), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Query: 58 RAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVG 97
A ++G PN GK+TLFNA+ N + N+P T+E G
Sbjct: 3 HALLIGNPNCGKTTLFNALT-NANQRVGNWPGVTVEKKTG 41
>pdb|2E87|A Chain A, Crystal Structure Of Hypothetical Gtp-Binding Protein
Ph1320 From Pyrococcus Horikoshii Ot3, In Complex With
Gdp
Length = 357
Score = 37.0 bits (84), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 19/37 (51%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Query: 61 IVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVG 97
I G PNVGKSTL A+ K + A++PF T NVG
Sbjct: 172 IAGHPNVGKSTLLKALT-TAKPEIASYPFTTRGINVG 207
>pdb|2DYK|A Chain A, Crystal Structure Of N-Terminal Gtp-Binding Domain Of
Enga From Thermus Thermophilus Hb8
pdb|2DYK|B Chain B, Crystal Structure Of N-Terminal Gtp-Binding Domain Of
Enga From Thermus Thermophilus Hb8
Length = 161
Score = 37.0 bits (84), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 25/39 (64%)
Query: 61 IVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIV 99
IVG PNVGKS+LFN +++ A A+ P T + G+V
Sbjct: 6 IVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVV 44
>pdb|3K53|A Chain A, Crystal Structure Of Nfeob From P. Furiosus
pdb|3K53|B Chain B, Crystal Structure Of Nfeob From P. Furiosus
pdb|3K53|C Chain C, Crystal Structure Of Nfeob From P. Furiosus
pdb|3K53|D Chain D, Crystal Structure Of Nfeob From P. Furiosus
Length = 271
Score = 36.6 bits (83), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Query: 59 AGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIV 99
+VG PNVGK+T+FNA+ + N+P T+E GI+
Sbjct: 6 VALVGNPNVGKTTIFNALT-GLRQHVGNWPGVTVEKKEGIM 45
>pdb|1PUJ|A Chain A, Structure Of B. Subtilis Ylqf Gtpase
Length = 282
Score = 36.2 bits (82), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 24/36 (66%)
Query: 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCT 91
++RA I+G+PNVGKSTL N + + A+ + P T
Sbjct: 120 AIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGIT 155
>pdb|3GEH|A Chain A, Crystal Structure Of Mnme From Nostoc In Complex With Gdp,
Folinic Acid And Zn
Length = 462
Score = 36.2 bits (82), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 36/146 (24%), Positives = 62/146 (42%), Gaps = 26/146 (17%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCT---IEPNVGIVAVPDPRLHVLSGLS 113
L+ IVG PNVGKS+L NA ++ +A + P T +E + + +P
Sbjct: 225 LKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGGIP----------- 273
Query: 114 KSQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGK 173
V+ +D AG+ + + Q E +G + R+ + +V D G
Sbjct: 274 ---------VQVLDTAGIRETSDQVEKIG---VERSRQAANTADLVLLTIDAATGWTTGD 321
Query: 174 VDPKSDVDVINLELVFSDLDQIEKRM 199
+ V L LV + +D +EK++
Sbjct: 322 QEIYEQVKHRPLILVMNKIDLVEKQL 347
>pdb|2WIA|A Chain A, Crystal Structures Of The N-Terminal Intracellular Domain
Of Feob From Klebsiella Pneumoniae In Apo Form
pdb|2WIA|B Chain B, Crystal Structures Of The N-Terminal Intracellular Domain
Of Feob From Klebsiella Pneumoniae In Apo Form
pdb|2WIB|A Chain A, Crystal Structures Of The N-Terminal Intracellular Domain
Of Feob From Klebsiella Pneumoniae In Gdp Binding State
pdb|2WIB|B Chain B, Crystal Structures Of The N-Terminal Intracellular Domain
Of Feob From Klebsiella Pneumoniae In Gdp Binding State
pdb|2WIC|A Chain A, Crystal Structures Of The N-Terminal Intracellular Domain
Of Feob From Klebsiella Pneumoniae In Gmppnp Binding
State
Length = 267
Score = 36.2 bits (82), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPD 103
L G++G PN GK+TLFN + + + N+ T+E GI A D
Sbjct: 4 LTVGLIGNPNSGKTTLFNQLT-GARQRVGNWAGVTVERKEGIFATTD 49
>pdb|1XZP|A Chain A, Structure Of The Gtp-Binding Protein Trme From Thermotoga
Maritima
pdb|1XZQ|A Chain A, Structure Of The Gtp-binding Protein Trme From Thermotoga
Maritima Complexed With 5-formyl-thf
Length = 482
Score = 36.2 bits (82), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 23/39 (58%)
Query: 53 ISMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCT 91
++ LR IVG PNVGKSTL N ++ +A + P T
Sbjct: 240 LNRGLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTT 278
>pdb|2WJH|A Chain A, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
pdb|2WJH|B Chain B, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
Length = 166
Score = 34.7 bits (78), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 25/43 (58%), Gaps = 3/43 (6%)
Query: 56 SLRAGIVGLPNVGKSTLFNAVV-ENGKAQAANFPFCTIEPNVG 97
S ++G PNVGKST+FNA+ EN N+P T+E G
Sbjct: 3 SYEIALIGNPNVGKSTIFNALTGEN--VYIGNWPGVTVEKKEG 43
>pdb|2WJI|A Chain A, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
pdb|2WJI|B Chain B, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
Length = 165
Score = 34.7 bits (78), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 25/43 (58%), Gaps = 3/43 (6%)
Query: 56 SLRAGIVGLPNVGKSTLFNAVV-ENGKAQAANFPFCTIEPNVG 97
S ++G PNVGKST+FNA+ EN N+P T+E G
Sbjct: 3 SYEIALIGNPNVGKSTIFNALTGEN--VYIGNWPGVTVEKKEG 43
>pdb|2WJG|A Chain A, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
pdb|2WJG|B Chain B, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
Length = 188
Score = 34.7 bits (78), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 25/43 (58%), Gaps = 3/43 (6%)
Query: 56 SLRAGIVGLPNVGKSTLFNAVV-ENGKAQAANFPFCTIEPNVG 97
S ++G PNVGKST+FNA+ EN N+P T+E G
Sbjct: 7 SYEIALIGNPNVGKSTIFNALTGEN--VYIGNWPGVTVEKKEG 47
>pdb|2WJJ|A Chain A, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
pdb|2WJJ|B Chain B, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
Length = 168
Score = 34.7 bits (78), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 25/43 (58%), Gaps = 3/43 (6%)
Query: 56 SLRAGIVGLPNVGKSTLFNAVV-ENGKAQAANFPFCTIEPNVG 97
S ++G PNVGKST+FNA+ EN N+P T+E G
Sbjct: 4 SYEIALIGNPNVGKSTIFNALTGEN--VYIGNWPGVTVEKKEG 44
>pdb|3B1X|A Chain A, Crystal Structure Of An S. Thermophilus Nfeob E66a Mutant
Bound To Gmppnp
pdb|3B1X|B Chain B, Crystal Structure Of An S. Thermophilus Nfeob E66a Mutant
Bound To Gmppnp
Length = 272
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 55/228 (24%), Positives = 90/228 (39%), Gaps = 61/228 (26%)
Query: 60 GIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAV 119
++G PN GK++LFN + + + + N+P T+E SGL K K
Sbjct: 7 ALIGNPNSGKTSLFNLITGHNQ-RVGNWPGVTVERK--------------SGLVKKNK-- 49
Query: 120 PASVEFVDIAGLVKGA--SQGEGLGNKFLSHIREVDSILQVVRC--FEDN---------- 165
+E D+ G+ + S E + +L R DSIL VV E N
Sbjct: 50 --DLEIQDLPGIYSMSPYSPAEKVARDYLLSQR-ADSILNVVDATNLERNLYLTTQLIET 106
Query: 166 -----------DIVHVNGKVDPKSDVDVINLELVF----------SDLDQIEKRMEKLKK 204
D++ GK K +VD ++ L + +DQ+ K+
Sbjct: 107 GIPVTIALNMIDVLDGQGK---KINVDKLSYHLGVPVVATSALKQTGVDQVVKKAAHTTT 163
Query: 205 GKAKDSQSKLKEDAEKAALEKIQQALMDGKPARSV---TLNDFERDSI 249
D + +D +AA+ +I + L + P RS + FE+DS+
Sbjct: 164 STVGDLAFPIYDDRLEAAISQILEVLGNSVPQRSARFYAIKLFEQDSL 211
>pdb|1WF3|A Chain A, Crystal Structure Of Gtp-Binding Protein Tt1341 From
Thermus Thermophilus Hb8
Length = 301
Score = 33.9 bits (76), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 57/214 (26%), Positives = 93/214 (43%), Gaps = 41/214 (19%)
Query: 60 GIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAV 119
IVG PNVGKSTL N ++ A + P T + GI L++ ++
Sbjct: 11 AIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGI-------------LTEGRR-- 55
Query: 120 PASVEFVDIAGLVKGA-SQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPKS 178
+ FVD GL K + GE + + + +V++++ VV D+ H P +
Sbjct: 56 --QIVFVDTPGLHKPMDALGEFMDQEVYEALADVNAVVWVV------DLRH------PPT 101
Query: 179 DVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMDGKPARS 238
D ELV L + ++ L G D+ +K E+A KA E + +A +P
Sbjct: 102 PED----ELVARALKPLVGKVPILLVGNKLDA-AKYPEEAMKAYHELLPEA----EPRML 152
Query: 239 VTLNDFERDSIKQ--LCLLTMKPIIYVANVAESD 270
L++ + +K L L+ P Y + A+SD
Sbjct: 153 SALDERQVAELKADLLALMPEGPFFYPEDYAKSD 186
>pdb|1EFW|A Chain A, Crystal Structure Of Aspartyl-Trna Synthetase From Thermus
Thermophilus Complexed To Trnaasp From Escherichia Coli
pdb|1EFW|B Chain B, Crystal Structure Of Aspartyl-Trna Synthetase From Thermus
Thermophilus Complexed To Trnaasp From Escherichia Coli
pdb|1G51|A Chain A, Aspartyl Trna Synthetase From Thermus Thermophilus At 2.4
A Resolution
pdb|1G51|B Chain B, Aspartyl Trna Synthetase From Thermus Thermophilus At 2.4
A Resolution
pdb|1L0W|A Chain A, Aspartyl-Trna Synthetase-1 From Space-Grown Crystals
pdb|1L0W|B Chain B, Aspartyl-Trna Synthetase-1 From Space-Grown Crystals
Length = 580
Score = 33.1 bits (74), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 14/51 (27%), Positives = 28/51 (54%), Gaps = 5/51 (9%)
Query: 152 VDSILQVVRCFEDNDIVHVNGKVDPKSDVDVINLELVFSDLDQIEKRMEKL 202
+D Q+ RCF D D+ + D + D ++LE+ F +++ + + E+L
Sbjct: 212 LDRYFQIARCFRDEDL-----RADRQPDFTQLDLEMSFVEVEDVLELNERL 257
>pdb|3LX5|A Chain A, Crystal Structure Of Mgmppnp-Bound Nfeob From S.
Thermophilus
pdb|3LX8|A Chain A, Crystal Structure Of Gdp-Bound Nfeob From S. Thermophilus
pdb|3SS8|A Chain A, Crystal Structure Of Nfeob From S. Thermophilus Bound To
Gdp.Alf4- And K+
pdb|3SS8|B Chain B, Crystal Structure Of Nfeob From S. Thermophilus Bound To
Gdp.Alf4- And K+
Length = 272
Score = 32.7 bits (73), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 55/228 (24%), Positives = 90/228 (39%), Gaps = 61/228 (26%)
Query: 60 GIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAV 119
++G PN GK++LFN + + + + N+P T+E SGL K K
Sbjct: 7 ALIGNPNSGKTSLFNLITGHNQ-RVGNWPGVTVERK--------------SGLVKKNK-- 49
Query: 120 PASVEFVDIAGLVKGA--SQGEGLGNKFLSHIREVDSILQVVRC--FEDN---------- 165
+E D+ G+ + S E + +L R DSIL VV E N
Sbjct: 50 --DLEIQDLPGIYSMSPYSPEEKVARDYLLSQR-ADSILNVVDATNLERNLYLTTQLIET 106
Query: 166 -----------DIVHVNGKVDPKSDVDVINLELVF----------SDLDQIEKRMEKLKK 204
D++ GK K +VD ++ L + +DQ+ K+
Sbjct: 107 GIPVTIALNMIDVLDGQGK---KINVDKLSYHLGVPVVATSALKQTGVDQVVKKAAHTTT 163
Query: 205 GKAKDSQSKLKEDAEKAALEKIQQALMDGKPARSV---TLNDFERDSI 249
D + +D +AA+ +I + L + P RS + FE+DS+
Sbjct: 164 STVGDLAFPIYDDRLEAAISQILEVLGNSVPQRSARFYAIKLFEQDSL 211
>pdb|3B1V|A Chain A, Crystal Structure Of An S. Thermophilus Nfeob E67a
Mutant Bound To Mgmppnp
pdb|3B1W|A Chain A, Crystal Structure Of An S. Thermophilus Nfeob E67a
Mutant Bound To Gdp
pdb|3B1W|B Chain B, Crystal Structure Of An S. Thermophilus Nfeob E67a
Mutant Bound To Gdp
pdb|3B1W|C Chain C, Crystal Structure Of An S. Thermophilus Nfeob E67a
Mutant Bound To Gdp
pdb|3B1W|D Chain D, Crystal Structure Of An S. Thermophilus Nfeob E67a
Mutant Bound To Gdp
Length = 272
Score = 32.3 bits (72), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Query: 60 GIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIV 99
++G PN GK++LFN + + + + N+P T+E G+V
Sbjct: 7 ALIGNPNSGKTSLFNLITGHNQ-RVGNWPGVTVERKSGLV 45
>pdb|3HYT|A Chain A, Structural Basis Of Gdp Release And Gating In G Protein
Coupled Fe2+ Transport
pdb|3HYT|B Chain B, Structural Basis Of Gdp Release And Gating In G Protein
Coupled Fe2+ Transport
pdb|3HYT|C Chain C, Structural Basis Of Gdp Release And Gating In G Protein
Coupled Fe2+ Transport
Length = 270
Score = 31.6 bits (70), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPD 103
L G++G PN GK+TLFN + + + N+ T+E G + D
Sbjct: 4 LTIGLIGNPNSGKTTLFNQLT-GSRQRVGNWAGVTVERKEGQFSTTD 49
>pdb|3HYR|A Chain A, Structural Insight Into G Protein Coupling And Regulation
Of Fe2+ Membrane Transport
pdb|3HYR|B Chain B, Structural Insight Into G Protein Coupling And Regulation
Of Fe2+ Membrane Transport
pdb|3HYR|C Chain C, Structural Insight Into G Protein Coupling And Regulation
Of Fe2+ Membrane Transport
Length = 270
Score = 31.6 bits (70), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPD 103
L G++G PN GK+TLFN + + + N+ T+E G + D
Sbjct: 4 LTIGLIGNPNSGKTTLFNQLT-GSRQRVGNWAGVTVERKEGQFSTTD 49
>pdb|3I8S|A Chain A, Structure Of The Cytosolic Domain Of E. Coli Feob,
Nucleotide-Free Form
pdb|3I8S|B Chain B, Structure Of The Cytosolic Domain Of E. Coli Feob,
Nucleotide-Free Form
pdb|3I8S|C Chain C, Structure Of The Cytosolic Domain Of E. Coli Feob,
Nucleotide-Free Form
pdb|3I8X|A Chain A, Structure Of The Cytosolic Domain Of E. Coli Feob,
Gdp-Bound Form
pdb|3I8X|B Chain B, Structure Of The Cytosolic Domain Of E. Coli Feob,
Gdp-Bound Form
pdb|3I8X|C Chain C, Structure Of The Cytosolic Domain Of E. Coli Feob,
Gdp-Bound Form
pdb|3I92|A Chain A, Structure Of The Cytosolic Domain Of E. Coli Feob,
Gppch2p- Bound Form
pdb|3I92|B Chain B, Structure Of The Cytosolic Domain Of E. Coli Feob,
Gppch2p- Bound Form
pdb|3I92|C Chain C, Structure Of The Cytosolic Domain Of E. Coli Feob,
Gppch2p- Bound Form
Length = 274
Score = 31.6 bits (70), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPD 103
L G++G PN GK+TLFN + + + N+ T+E G + D
Sbjct: 4 LTIGLIGNPNSGKTTLFNQLT-GSRQRVGNWAGVTVERKEGQFSTTD 49
>pdb|3B1Z|A Chain A, Crystal Structure Of An S. Thermophilus Nfeob T35s Mutant
Without Nucleotide
Length = 272
Score = 31.2 bits (69), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 54/228 (23%), Positives = 90/228 (39%), Gaps = 61/228 (26%)
Query: 60 GIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAV 119
++G PN GK++LFN + + + + N+P ++E SGL K K
Sbjct: 7 ALIGNPNSGKTSLFNLITGHNQ-RVGNWPGVSVERK--------------SGLVKKNK-- 49
Query: 120 PASVEFVDIAGLVKGA--SQGEGLGNKFLSHIREVDSILQVVRC--FEDN---------- 165
+E D+ G+ + S E + +L R DSIL VV E N
Sbjct: 50 --DLEIQDLPGIYSMSPYSPEEKVARDYLLSQR-ADSILNVVDATNLERNLYLTTQLIET 106
Query: 166 -----------DIVHVNGKVDPKSDVDVINLELVF----------SDLDQIEKRMEKLKK 204
D++ GK K +VD ++ L + +DQ+ K+
Sbjct: 107 GIPVTIALNMIDVLDGQGK---KINVDKLSYHLGVPVVATSALKQTGVDQVVKKAAHTTT 163
Query: 205 GKAKDSQSKLKEDAEKAALEKIQQALMDGKPARSV---TLNDFERDSI 249
D + +D +AA+ +I + L + P RS + FE+DS+
Sbjct: 164 STVGDLAFPIYDDRLEAAISQILEVLGNSVPQRSARFYAIKLFEQDSL 211
>pdb|2XMI|A Chain A, Catalytic Domain Of Mouse 2',3'-Cyclic Nucleotide
3'-Phosphodiesterase, Complexed With Citrate
pdb|2Y1P|A Chain A, Catalytic Domain Of Mouse 2',3'-Cyclic Nucleotide
3'-Phosphodiesterase, Complexed With Citrate
pdb|2Y3X|A Chain A, Catalytic Domain Of Mouse 2',3'-Cyclic Nucleotide 3'-
Phosphodiesterase, Complexed With Sulfate
pdb|2Y3X|B Chain B, Catalytic Domain Of Mouse 2',3'-Cyclic Nucleotide 3'-
Phosphodiesterase, Complexed With Sulfate
pdb|2Y3X|E Chain E, Catalytic Domain Of Mouse 2',3'-Cyclic Nucleotide 3'-
Phosphodiesterase, Complexed With Sulfate
pdb|2YDB|A Chain A, Catalytic Domain Of Mouse 2',3'-Cyclic Nucleotide
3'-Phosphodiesterase, Soaked With 2',3'-Cyclic Nadp
pdb|2YDD|A Chain A, Catalytic Domain Of Mouse 2',3'-Cyclic Nucleotide
3'-Phosphodiesterase, Soaked With 2',3'-Cyclic Amp
pdb|2YDC|A Chain A, Catalytic Domain Of Mouse 2',3'-Cyclic Nucleotide
3'-Phosphodiesterase, Soaked With Gtp
Length = 221
Score = 31.2 bits (69), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 22/42 (52%)
Query: 102 PDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGASQGEGLGN 143
P R HV G + + V ++ +DI VKG SQGE +G
Sbjct: 147 PGSRAHVTLGCAADVQPVQTGLDLLDILQQVKGGSQGEAVGE 188
>pdb|3B1Y|A Chain A, Crystal Structure Of An S. Thermophilus Nfeob T35a Mutant
Bound To Gdp
Length = 272
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 54/228 (23%), Positives = 89/228 (39%), Gaps = 61/228 (26%)
Query: 60 GIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAV 119
++G PN GK++LFN + + + + N+P +E SGL K K
Sbjct: 7 ALIGNPNSGKTSLFNLITGHNQ-RVGNWPGVAVERK--------------SGLVKKNK-- 49
Query: 120 PASVEFVDIAGLVKGA--SQGEGLGNKFLSHIREVDSILQVVRC--FEDN---------- 165
+E D+ G+ + S E + +L R DSIL VV E N
Sbjct: 50 --DLEIQDLPGIYSMSPYSPEEKVARDYLLSQR-ADSILNVVDATNLERNLYLTTQLIET 106
Query: 166 -----------DIVHVNGKVDPKSDVDVINLELVF----------SDLDQIEKRMEKLKK 204
D++ GK K +VD ++ L + +DQ+ K+
Sbjct: 107 GIPVTIALNMIDVLDGQGK---KINVDKLSYHLGVPVVATSALKQTGVDQVVKKAAHTTT 163
Query: 205 GKAKDSQSKLKEDAEKAALEKIQQALMDGKPARSV---TLNDFERDSI 249
D + +D +AA+ +I + L + P RS + FE+DS+
Sbjct: 164 STVGDLAFPIYDDRLEAAISQILEVLGNSVPQRSARFYAIKLFEQDSL 211
>pdb|2HJG|A Chain A, The Crystal Structure Of The B. Subtilis Yphc Gtpase In
Complex With Gdp
Length = 436
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 12/17 (70%), Positives = 14/17 (82%)
Query: 60 GIVGLPNVGKSTLFNAV 76
IVG PNVGKST+FN +
Sbjct: 7 AIVGRPNVGKSTIFNRI 23
>pdb|4DCS|A Chain A, Crystal Structure Of B. Subtilis Enga In Complex With
Sulfate Ion And Gdp
pdb|4DCT|A Chain A, Crystal Structure Of B. Subtilis Enga In Complex With
Half-Occupacy Gdp
pdb|4DCU|A Chain A, Crystal Structure Of B. Subtilis Enga In Complex With
Gdp
pdb|4DCV|A Chain A, Crystal Structure Of B. Subtilis Enga In Complex With
Gmppcp
Length = 456
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 12/16 (75%), Positives = 14/16 (87%)
Query: 61 IVGLPNVGKSTLFNAV 76
IVG PNVGKST+FN +
Sbjct: 28 IVGRPNVGKSTIFNRI 43
>pdb|3TAH|A Chain A, Crystal Structure Of An S. Thermophilus Nfeob N11a Mutant
Bound To Mgdp
pdb|3TAH|B Chain B, Crystal Structure Of An S. Thermophilus Nfeob N11a Mutant
Bound To Mgdp
Length = 272
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 54/228 (23%), Positives = 89/228 (39%), Gaps = 61/228 (26%)
Query: 60 GIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAV 119
++G P GK++LFN + + + + N+P T+E SGL K K
Sbjct: 7 ALIGNPASGKTSLFNLITGHNQ-RVGNWPGVTVERK--------------SGLVKKNK-- 49
Query: 120 PASVEFVDIAGLVKGA--SQGEGLGNKFLSHIREVDSILQVVRC--FEDN---------- 165
+E D+ G+ + S E + +L R DSIL VV E N
Sbjct: 50 --DLEIQDLPGIYSMSPYSPEEKVARDYLLSQR-ADSILNVVDATNLERNLYLTTQLIET 106
Query: 166 -----------DIVHVNGKVDPKSDVDVINLELVF----------SDLDQIEKRMEKLKK 204
D++ GK K +VD ++ L + +DQ+ K+
Sbjct: 107 GIPVTIALNMIDVLDGQGK---KINVDKLSYHLGVPVVATSALKQTGVDQVVKKAAHTTT 163
Query: 205 GKAKDSQSKLKEDAEKAALEKIQQALMDGKPARSV---TLNDFERDSI 249
D + +D +AA+ +I + L + P RS + FE+DS+
Sbjct: 164 STVGDLAFPIYDDRLEAAISQILEVLGNSVPQRSARFYAIKLFEQDSL 211
>pdb|1EQR|A Chain A, Crystal Structure Of Free Aspartyl-Trna Synthetase From
Escherichia Coli
pdb|1EQR|B Chain B, Crystal Structure Of Free Aspartyl-Trna Synthetase From
Escherichia Coli
pdb|1EQR|C Chain C, Crystal Structure Of Free Aspartyl-Trna Synthetase From
Escherichia Coli
pdb|1IL2|A Chain A, Crystal Structure Of The E. Coli Aspartyl-Trna
Synthetase:yeast Trnaasp:aspartyl-Adenylate Complex
pdb|1IL2|B Chain B, Crystal Structure Of The E. Coli Aspartyl-Trna
Synthetase:yeast Trnaasp:aspartyl-Adenylate Complex
Length = 590
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 5/50 (10%)
Query: 153 DSILQVVRCFEDNDIVHVNGKVDPKSDVDVINLELVFSDLDQIEKRMEKL 202
D Q+V+CF D D+ + D + + I++E F Q+ + ME L
Sbjct: 207 DRYYQIVKCFRDEDL-----RADRQPEFTQIDVETSFMTAPQVREVMEAL 251
>pdb|1C0A|A Chain A, Crystal Structure Of The E. Coli Aspartyl-Trna Synthetase
: Trnaasp : Aspartyl-Adenylate Complex
Length = 585
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 5/50 (10%)
Query: 153 DSILQVVRCFEDNDIVHVNGKVDPKSDVDVINLELVFSDLDQIEKRMEKL 202
D Q+V+CF D D+ + D + + I++E F Q+ + ME L
Sbjct: 207 DRYYQIVKCFRDEDL-----RADRQPEFTQIDVETSFMTAPQVREVMEAL 251
>pdb|3GEE|A Chain A, Crystal Structure Of Mnme From Chlorobium Tepidum In
Complex With Gdp And Folinic Acid
pdb|3GEI|A Chain A, Crystal Structure Of Mnme From Chlorobium Tepidum In
Complex With Gcp
pdb|3GEI|B Chain B, Crystal Structure Of Mnme From Chlorobium Tepidum In
Complex With Gcp
pdb|3GEI|C Chain C, Crystal Structure Of Mnme From Chlorobium Tepidum In
Complex With Gcp
Length = 476
Score = 29.3 bits (64), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 61 IVGLPNVGKSTLFNAVVENGKAQAANFPFCT 91
I G PN GKSTL N ++ +A ++ P T
Sbjct: 238 IAGKPNAGKSTLLNTLLGQERAIVSHMPGTT 268
>pdb|1EGA|A Chain A, Crystal Structure Of A Widely Conserved Gtpase Era
pdb|1EGA|B Chain B, Crystal Structure Of A Widely Conserved Gtpase Era
pdb|1X1L|X Chain X, Interaction Of Era,A Gtpase Protein, With The 3'minor
Domain Of The 16s Rrna Within The Thermus Thermophilus
30s Subunit.
pdb|3IEU|A Chain A, Crystal Structure Of Era In Complex With Gdp
pdb|3IEU|B Chain B, Crystal Structure Of Era In Complex With Gdp
Length = 301
Score = 29.3 bits (64), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 26/57 (45%), Gaps = 8/57 (14%)
Query: 60 GIVGLPNVGKSTLFNAV------VENGKAQAANFPFCTI--EPNVGIVAVPDPRLHV 108
IVG PNVGKSTL N + + + KAQ I E + V P LH+
Sbjct: 12 AIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHM 68
>pdb|1X18|X Chain X, Contact Sites Of Era Gtpase On The Thermus Thermophilus
30s Subunit
Length = 292
Score = 29.3 bits (64), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 26/57 (45%), Gaps = 8/57 (14%)
Query: 60 GIVGLPNVGKSTLFNAV------VENGKAQAANFPFCTI--EPNVGIVAVPDPRLHV 108
IVG PNVGKSTL N + + + KAQ I E + V P LH+
Sbjct: 9 AIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHM 65
>pdb|2QM7|A Chain A, Meab, A Bacterial Homolog Of Mmaa, Bound To Gdp
pdb|2QM7|B Chain B, Meab, A Bacterial Homolog Of Mmaa, Bound To Gdp
Length = 337
Score = 28.9 bits (63), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 21/40 (52%)
Query: 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPN 95
++R GI G+P VGKST +A+ A ++P+
Sbjct: 55 AIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPS 94
>pdb|2QM8|A Chain A, Meab, A Bacterial Homolog Of Mmaa, In The Nucleotide
Free Form
pdb|2QM8|B Chain B, Meab, A Bacterial Homolog Of Mmaa, In The Nucleotide
Free Form
Length = 337
Score = 28.9 bits (63), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 11/21 (52%), Positives = 16/21 (76%)
Query: 56 SLRAGIVGLPNVGKSTLFNAV 76
++R GI G+P VGKST +A+
Sbjct: 55 AIRVGITGVPGVGKSTTIDAL 75
>pdb|2ILX|A Chain A, Solution Structure Of Catalytic Domain Of Rat
2',3'-Cyclic- Nucleotide 3'-Phosphodiesterase (Cnp)
Protein
Length = 219
Score = 28.5 bits (62), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 22/42 (52%)
Query: 102 PDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGASQGEGLGN 143
P R HV G + + V ++ ++I VKG SQGE +G
Sbjct: 145 PGSRAHVTLGCAADVQPVQTGLDLLEILQQVKGGSQGEEVGE 186
>pdb|1B26|A Chain A, Glutamate Dehydrogenase
pdb|1B26|B Chain B, Glutamate Dehydrogenase
pdb|1B26|C Chain C, Glutamate Dehydrogenase
pdb|1B26|D Chain D, Glutamate Dehydrogenase
pdb|1B26|E Chain E, Glutamate Dehydrogenase
pdb|1B26|F Chain F, Glutamate Dehydrogenase
Length = 416
Score = 28.1 bits (61), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Query: 182 VINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKE 216
V +L+ F DLDQ+ +EK+ KG D K+KE
Sbjct: 354 VQDLQSFFWDLDQVRNALEKMMKGAFNDVM-KVKE 387
>pdb|2TMG|A Chain A, Thermotoga Maritima Glutamate Dehydrogenase Mutant S128r,
T158e, N117r, S160e
pdb|2TMG|B Chain B, Thermotoga Maritima Glutamate Dehydrogenase Mutant S128r,
T158e, N117r, S160e
pdb|2TMG|C Chain C, Thermotoga Maritima Glutamate Dehydrogenase Mutant S128r,
T158e, N117r, S160e
pdb|2TMG|D Chain D, Thermotoga Maritima Glutamate Dehydrogenase Mutant S128r,
T158e, N117r, S160e
pdb|2TMG|E Chain E, Thermotoga Maritima Glutamate Dehydrogenase Mutant S128r,
T158e, N117r, S160e
pdb|2TMG|F Chain F, Thermotoga Maritima Glutamate Dehydrogenase Mutant S128r,
T158e, N117r, S160e
Length = 415
Score = 28.1 bits (61), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Query: 182 VINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKE 216
V +L+ F DLDQ+ +EK+ KG D K+KE
Sbjct: 353 VQDLQSFFWDLDQVRNALEKMMKGAFNDVM-KVKE 386
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.132 0.364
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,558,074
Number of Sequences: 62578
Number of extensions: 371024
Number of successful extensions: 996
Number of sequences better than 100.0: 59
Number of HSP's better than 100.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 28
Number of HSP's that attempted gapping in prelim test: 940
Number of HSP's gapped (non-prelim): 63
length of query: 359
length of database: 14,973,337
effective HSP length: 100
effective length of query: 259
effective length of database: 8,715,537
effective search space: 2257324083
effective search space used: 2257324083
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 52 (24.6 bits)