Query 018241
Match_columns 359
No_of_seqs 337 out of 3482
Neff 7.9
Searched_HMMs 46136
Date Fri Mar 29 07:19:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018241.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018241hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0012 Predicted GTPase, prob 100.0 8.9E-67 1.9E-71 491.9 22.9 302 55-359 1-307 (372)
2 PRK09601 GTP-binding protein Y 100.0 9.1E-65 2E-69 485.7 29.4 299 55-359 1-299 (364)
3 KOG1491 Predicted GTP-binding 100.0 1.7E-64 3.7E-69 465.9 25.3 305 52-359 16-326 (391)
4 PTZ00258 GTP-binding protein; 100.0 4.5E-63 9.7E-68 479.1 29.3 303 53-359 18-323 (390)
5 TIGR00092 GTP-binding protein 100.0 2.7E-62 5.9E-67 468.6 27.6 298 55-359 1-303 (368)
6 cd01900 YchF YchF subfamily. 100.0 5.3E-55 1.1E-59 406.4 24.2 274 59-338 1-274 (274)
7 PRK09602 translation-associate 100.0 4.3E-46 9.2E-51 364.3 26.7 294 56-359 1-348 (396)
8 cd01899 Ygr210 Ygr210 subfamil 100.0 1.3E-35 2.8E-40 282.6 19.0 244 59-309 1-260 (318)
9 COG1159 Era GTPase [General fu 100.0 2.2E-30 4.8E-35 238.0 12.8 191 57-273 7-221 (298)
10 COG1163 DRG Predicted GTPase [ 100.0 2.5E-29 5.4E-34 232.1 9.3 232 55-351 62-301 (365)
11 COG2262 HflX GTPases [General 99.9 1.1E-27 2.3E-32 228.3 12.3 193 2-233 119-358 (411)
12 TIGR00436 era GTP-binding prot 99.9 3.5E-25 7.7E-30 207.5 14.1 189 58-273 2-213 (270)
13 PRK11058 GTPase HflX; Provisio 99.9 2.6E-24 5.7E-29 212.9 12.0 193 2-232 124-363 (426)
14 PRK12298 obgE GTPase CgtA; Rev 99.9 1E-23 2.3E-28 206.4 15.9 168 57-250 160-358 (390)
15 PRK15494 era GTPase Era; Provi 99.9 1.1E-23 2.3E-28 203.5 14.8 190 56-273 52-265 (339)
16 COG0536 Obg Predicted GTPase [ 99.9 4.1E-23 8.8E-28 192.5 13.3 139 29-191 118-270 (369)
17 TIGR03156 GTP_HflX GTP-binding 99.9 6.6E-23 1.4E-27 198.4 11.5 190 2-229 116-350 (351)
18 cd01896 DRG The developmentall 99.9 8.9E-23 1.9E-27 187.2 11.3 224 58-346 2-233 (233)
19 PRK00089 era GTPase Era; Revie 99.9 2.4E-22 5.1E-27 190.4 14.2 190 57-272 6-219 (292)
20 KOG1489 Predicted GTP-binding 99.9 2.2E-22 4.8E-27 185.4 10.3 107 57-187 197-303 (366)
21 PRK12299 obgE GTPase CgtA; Rev 99.9 1.1E-21 2.4E-26 188.6 15.0 149 57-232 159-329 (335)
22 KOG1486 GTP-binding protein DR 99.9 2.6E-22 5.6E-27 179.3 7.5 230 55-348 61-297 (364)
23 COG1160 Predicted GTPases [Gen 99.9 3.9E-22 8.4E-27 193.1 8.6 143 57-230 4-164 (444)
24 PRK12297 obgE GTPase CgtA; Rev 99.9 4.4E-21 9.5E-26 189.1 14.1 148 57-235 159-331 (424)
25 PF02421 FeoB_N: Ferrous iron 99.9 2E-21 4.3E-26 166.4 9.7 140 57-226 1-156 (156)
26 PRK12296 obgE GTPase CgtA; Rev 99.8 7.7E-21 1.7E-25 189.7 13.2 149 56-233 159-342 (500)
27 TIGR02729 Obg_CgtA Obg family 99.8 2.1E-20 4.6E-25 179.5 15.0 146 57-230 158-328 (329)
28 COG0486 ThdF Predicted GTPase 99.8 6.4E-21 1.4E-25 185.1 10.6 159 43-233 204-378 (454)
29 KOG1423 Ras-like GTPase ERA [C 99.8 5.3E-20 1.1E-24 168.9 12.8 202 55-273 71-320 (379)
30 COG1160 Predicted GTPases [Gen 99.8 6E-20 1.3E-24 177.9 10.7 191 17-232 139-352 (444)
31 cd01898 Obg Obg subfamily. Th 99.8 3.5E-18 7.7E-23 147.8 12.1 146 58-230 2-170 (170)
32 cd01886 EF-G Elongation factor 99.7 2.4E-18 5.3E-23 161.0 7.1 227 58-347 1-249 (270)
33 COG1084 Predicted GTPase [Gene 99.7 2.3E-17 5.1E-22 153.5 13.1 105 55-177 167-293 (346)
34 COG0370 FeoB Fe2+ transport sy 99.7 2.3E-17 5E-22 166.6 13.4 163 57-249 4-182 (653)
35 cd01881 Obg_like The Obg-like 99.7 4.9E-17 1.1E-21 141.2 10.7 142 61-229 1-175 (176)
36 PF01926 MMR_HSR1: 50S ribosom 99.7 3.5E-17 7.7E-22 133.5 9.2 88 58-162 1-90 (116)
37 PRK05291 trmE tRNA modificatio 99.7 2.9E-17 6.3E-22 164.3 10.4 149 49-232 208-371 (449)
38 KOG0410 Predicted GTP binding 99.7 1.7E-17 3.7E-22 153.5 7.6 140 2-164 106-270 (410)
39 KOG1487 GTP-binding protein DR 99.7 1.5E-17 3.3E-22 149.5 4.7 224 57-347 60-289 (358)
40 KOG1191 Mitochondrial GTPase [ 99.7 7.3E-17 1.6E-21 156.7 8.9 162 47-232 259-451 (531)
41 TIGR03594 GTPase_EngA ribosome 99.7 2E-16 4.4E-21 157.6 10.5 144 58-232 1-161 (429)
42 PRK03003 GTP-binding protein D 99.7 3.4E-16 7.3E-21 157.9 11.4 147 55-232 37-200 (472)
43 PRK03003 GTP-binding protein D 99.7 1.5E-15 3.4E-20 153.0 15.8 153 55-233 210-384 (472)
44 cd04170 EF-G_bact Elongation f 99.7 5.8E-16 1.3E-20 145.0 11.0 227 58-347 1-247 (268)
45 cd01878 HflX HflX subfamily. 99.6 1E-15 2.2E-20 137.1 11.9 144 54-230 39-204 (204)
46 cd01897 NOG NOG1 is a nucleola 99.6 1.9E-15 4E-20 130.6 12.8 144 57-230 1-167 (168)
47 TIGR03594 GTPase_EngA ribosome 99.6 2.1E-15 4.5E-20 150.4 14.0 155 55-232 171-345 (429)
48 cd04164 trmE TrmE (MnmE, ThdF, 99.6 1.4E-15 3E-20 129.1 10.1 141 56-230 1-156 (157)
49 PRK00093 GTP-binding protein D 99.6 2.9E-15 6.3E-20 149.6 13.8 154 55-232 172-345 (435)
50 PRK09518 bifunctional cytidyla 99.6 1.2E-15 2.6E-20 160.8 11.5 146 56-232 275-437 (712)
51 PRK00093 GTP-binding protein D 99.6 1.9E-15 4.1E-20 150.9 11.2 141 57-228 2-159 (435)
52 PRK09554 feoB ferrous iron tra 99.6 5.6E-15 1.2E-19 155.8 15.2 147 56-231 3-168 (772)
53 cd04171 SelB SelB subfamily. 99.6 2.2E-15 4.7E-20 129.1 9.8 143 57-228 1-163 (164)
54 cd01895 EngA2 EngA2 subfamily. 99.6 6.8E-15 1.5E-19 126.7 12.5 152 56-229 2-173 (174)
55 PRK09518 bifunctional cytidyla 99.6 3.7E-15 8.1E-20 157.1 13.1 150 56-232 450-622 (712)
56 cd01894 EngA1 EngA1 subfamily. 99.6 2.5E-15 5.5E-20 127.6 9.5 140 60-230 1-157 (157)
57 TIGR00450 mnmE_trmE_thdF tRNA 99.6 2.5E-15 5.5E-20 149.7 10.4 112 50-178 197-324 (442)
58 cd01852 AIG1 AIG1 (avrRpt2-ind 99.6 2.1E-14 4.5E-19 128.2 15.1 162 57-238 1-192 (196)
59 cd04163 Era Era subfamily. Er 99.6 6.7E-15 1.5E-19 125.5 11.5 149 56-230 3-168 (168)
60 cd01879 FeoB Ferrous iron tran 99.6 6.2E-15 1.3E-19 125.6 9.5 140 61-230 1-156 (158)
61 cd04169 RF3 RF3 subfamily. Pe 99.6 1.5E-15 3.3E-20 142.0 4.5 232 57-346 3-245 (267)
62 cd01861 Rab6 Rab6 subfamily. 99.6 1.5E-14 3.3E-19 123.8 9.7 140 58-230 2-161 (161)
63 TIGR00484 EF-G translation elo 99.5 2.8E-14 6E-19 150.1 12.6 211 57-346 11-259 (689)
64 COG0218 Predicted GTPase [Gene 99.5 2.8E-14 6.2E-19 125.2 10.0 107 55-181 23-152 (200)
65 cd04168 TetM_like Tet(M)-like 99.5 5.7E-13 1.2E-17 122.6 18.9 50 298-347 167-216 (237)
66 PRK00454 engB GTP-binding prot 99.5 5.8E-14 1.3E-18 124.5 11.1 150 55-232 23-195 (196)
67 cd04109 Rab28 Rab28 subfamily. 99.5 5.9E-14 1.3E-18 127.1 10.9 144 57-232 1-167 (215)
68 cd04158 ARD1 ARD1 subfamily. 99.5 5.9E-14 1.3E-18 122.0 10.2 143 58-236 1-166 (169)
69 TIGR03598 GTPase_YsxC ribosome 99.5 2.4E-14 5.2E-19 125.8 7.7 104 54-177 16-142 (179)
70 cd04145 M_R_Ras_like M-Ras/R-R 99.5 1.2E-13 2.6E-18 118.5 11.8 140 57-230 3-163 (164)
71 PRK04213 GTP-binding protein; 99.5 1.7E-13 3.8E-18 122.3 12.9 147 55-232 8-193 (201)
72 cd00881 GTP_translation_factor 99.5 5.3E-14 1.1E-18 123.3 9.2 142 58-231 1-187 (189)
73 cd01887 IF2_eIF5B IF2/eIF5B (i 99.5 6.1E-14 1.3E-18 120.8 9.3 147 57-230 1-165 (168)
74 cd04160 Arfrp1 Arfrp1 subfamil 99.5 6.7E-14 1.5E-18 120.7 9.3 138 58-227 1-165 (167)
75 cd04136 Rap_like Rap-like subf 99.5 1.4E-13 2.9E-18 118.0 11.1 140 57-230 2-162 (163)
76 cd01868 Rab11_like Rab11-like. 99.5 7.9E-14 1.7E-18 120.1 9.6 141 57-230 4-164 (165)
77 cd01890 LepA LepA subfamily. 99.5 1.5E-13 3.2E-18 120.0 11.1 145 58-231 2-177 (179)
78 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 99.5 1.3E-13 2.7E-18 119.1 10.2 141 57-230 3-163 (166)
79 cd00880 Era_like Era (E. coli 99.5 2.2E-13 4.8E-18 114.5 11.5 146 61-229 1-162 (163)
80 cd04142 RRP22 RRP22 subfamily. 99.5 2.4E-13 5.3E-18 121.6 12.2 150 57-231 1-174 (198)
81 cd04112 Rab26 Rab26 subfamily. 99.5 1.2E-13 2.5E-18 122.7 10.0 148 57-237 1-169 (191)
82 cd01889 SelB_euk SelB subfamil 99.5 8.7E-14 1.9E-18 123.6 9.0 159 57-231 1-186 (192)
83 cd04138 H_N_K_Ras_like H-Ras/N 99.5 2.8E-13 6.1E-18 115.6 11.3 139 57-230 2-161 (162)
84 cd01865 Rab3 Rab3 subfamily. 99.5 1.8E-13 3.9E-18 118.3 9.8 142 57-231 2-163 (165)
85 cd01866 Rab2 Rab2 subfamily. 99.5 2E-13 4.3E-18 118.4 10.1 142 57-231 5-166 (168)
86 PRK15467 ethanolamine utilizat 99.5 2E-13 4.4E-18 117.8 9.9 132 58-232 3-148 (158)
87 cd04166 CysN_ATPS CysN_ATPS su 99.5 5E-14 1.1E-18 127.0 6.4 97 58-178 1-144 (208)
88 smart00178 SAR Sar1p-like memb 99.5 9.9E-14 2.1E-18 122.5 8.1 144 55-229 16-183 (184)
89 smart00173 RAS Ras subfamily o 99.5 3.3E-13 7.2E-18 116.0 11.1 141 57-231 1-162 (164)
90 cd01864 Rab19 Rab19 subfamily. 99.5 1.6E-13 3.5E-18 118.4 9.1 143 56-230 3-165 (165)
91 cd01867 Rab8_Rab10_Rab13_like 99.5 2.1E-13 4.6E-18 118.0 9.9 142 56-230 3-164 (167)
92 cd04175 Rap1 Rap1 subgroup. T 99.5 3.8E-13 8.2E-18 115.8 11.1 140 57-230 2-162 (164)
93 cd04119 RJL RJL (RabJ-Like) su 99.5 3E-13 6.6E-18 116.1 9.9 141 57-230 1-166 (168)
94 cd01862 Rab7 Rab7 subfamily. 99.5 4.4E-13 9.6E-18 115.9 10.9 143 57-231 1-167 (172)
95 PLN03118 Rab family protein; P 99.5 4.9E-13 1.1E-17 120.6 11.0 145 55-233 13-179 (211)
96 cd01891 TypA_BipA TypA (tyrosi 99.4 3.9E-13 8.6E-18 119.6 10.2 98 57-178 3-131 (194)
97 cd04153 Arl5_Arl8 Arl5/Arl8 su 99.4 1.7E-13 3.7E-18 119.7 7.6 135 56-227 15-172 (174)
98 TIGR00437 feoB ferrous iron tr 99.4 2.2E-13 4.7E-18 140.5 9.4 139 63-231 1-155 (591)
99 cd04152 Arl4_Arl7 Arl4/Arl7 su 99.4 5.1E-13 1.1E-17 117.8 10.3 143 56-231 3-170 (183)
100 cd04154 Arl2 Arl2 subfamily. 99.4 4.2E-13 9.1E-18 116.9 9.7 135 55-227 13-171 (173)
101 smart00175 RAB Rab subfamily o 99.4 4.5E-13 9.7E-18 114.8 9.7 142 57-231 1-162 (164)
102 cd04113 Rab4 Rab4 subfamily. 99.4 4.7E-13 1E-17 114.8 9.6 140 57-229 1-160 (161)
103 cd00879 Sar1 Sar1 subfamily. 99.4 3.9E-13 8.4E-18 118.8 9.2 148 55-230 18-190 (190)
104 cd04107 Rab32_Rab38 Rab38/Rab3 99.4 8.8E-13 1.9E-17 118.0 11.6 145 57-232 1-169 (201)
105 cd04151 Arl1 Arl1 subfamily. 99.4 1.4E-13 3.1E-18 117.9 6.3 134 58-228 1-157 (158)
106 cd01863 Rab18 Rab18 subfamily. 99.4 8E-13 1.7E-17 113.2 10.7 139 57-229 1-160 (161)
107 PRK12739 elongation factor G; 99.4 1.4E-13 3.1E-18 144.8 7.1 211 56-345 8-257 (691)
108 COG3596 Predicted GTPase [Gene 99.4 3.1E-13 6.6E-18 123.5 8.3 93 54-163 37-129 (296)
109 cd04114 Rab30 Rab30 subfamily. 99.4 7.2E-13 1.6E-17 114.4 10.3 142 56-230 7-168 (169)
110 PF00009 GTP_EFTU: Elongation 99.4 4.6E-13 9.9E-18 118.7 9.3 146 57-231 4-187 (188)
111 cd04144 Ras2 Ras2 subfamily. 99.4 6.6E-13 1.4E-17 117.8 10.3 140 58-231 1-163 (190)
112 cd04149 Arf6 Arf6 subfamily. 99.4 1.9E-13 4.2E-18 118.9 6.7 134 56-227 9-166 (168)
113 cd04122 Rab14 Rab14 subfamily. 99.4 6.5E-13 1.4E-17 114.8 9.8 140 57-230 3-163 (166)
114 cd04176 Rap2 Rap2 subgroup. T 99.4 1.1E-12 2.4E-17 112.6 11.2 140 57-230 2-162 (163)
115 cd04124 RabL2 RabL2 subfamily. 99.4 1.4E-12 2.9E-17 112.4 11.6 137 57-231 1-158 (161)
116 cd04106 Rab23_lke Rab23-like s 99.4 7.9E-13 1.7E-17 113.3 9.5 141 57-228 1-160 (162)
117 cd04147 Ras_dva Ras-dva subfam 99.4 1.1E-12 2.5E-17 117.0 10.8 149 58-238 1-170 (198)
118 cd04101 RabL4 RabL4 (Rab-like4 99.4 8.2E-13 1.8E-17 113.5 9.4 143 57-230 1-163 (164)
119 cd01860 Rab5_related Rab5-rela 99.4 1.5E-12 3.3E-17 111.6 10.9 140 57-230 2-162 (163)
120 PRK00007 elongation factor G; 99.4 2.5E-13 5.4E-18 142.9 7.2 210 57-345 11-259 (693)
121 TIGR00231 small_GTP small GTP- 99.4 4.8E-13 1E-17 112.4 7.5 106 57-178 2-122 (161)
122 cd04110 Rab35 Rab35 subfamily. 99.4 1.5E-12 3.3E-17 116.4 11.0 144 55-231 5-167 (199)
123 cd00878 Arf_Arl Arf (ADP-ribos 99.4 1.1E-12 2.5E-17 112.0 9.8 133 58-228 1-157 (158)
124 cd01884 EF_Tu EF-Tu subfamily. 99.4 7.8E-13 1.7E-17 118.1 8.9 98 57-178 3-132 (195)
125 cd01893 Miro1 Miro1 subfamily. 99.4 2.2E-12 4.9E-17 111.6 11.4 141 57-230 1-163 (166)
126 cd04155 Arl3 Arl3 subfamily. 99.4 4.1E-13 9E-18 116.5 6.7 140 52-228 10-172 (173)
127 cd04108 Rab36_Rab34 Rab34/Rab3 99.4 1.3E-12 2.9E-17 113.8 9.9 141 58-231 2-165 (170)
128 cd04157 Arl6 Arl6 subfamily. 99.4 4.8E-13 1E-17 114.5 7.0 135 58-227 1-160 (162)
129 cd04111 Rab39 Rab39 subfamily. 99.4 1.6E-12 3.6E-17 117.4 10.8 143 57-231 3-166 (211)
130 smart00177 ARF ARF-like small 99.4 1.6E-12 3.6E-17 113.7 10.3 138 56-230 13-173 (175)
131 cd04120 Rab12 Rab12 subfamily. 99.4 1.6E-12 3.5E-17 116.7 10.4 143 57-231 1-163 (202)
132 cd04156 ARLTS1 ARLTS1 subfamil 99.4 9.8E-13 2.1E-17 112.6 8.6 134 58-228 1-159 (160)
133 cd04127 Rab27A Rab27a subfamil 99.4 1.3E-12 2.8E-17 114.3 9.5 152 56-230 4-176 (180)
134 cd04123 Rab21 Rab21 subfamily. 99.4 1.5E-12 3.3E-17 111.0 9.8 141 57-230 1-161 (162)
135 cd04150 Arf1_5_like Arf1-Arf5- 99.4 1.1E-12 2.4E-17 112.9 8.9 134 57-227 1-157 (159)
136 PTZ00369 Ras-like protein; Pro 99.4 2.5E-12 5.5E-17 113.9 11.4 142 56-231 5-167 (189)
137 cd04139 RalA_RalB RalA/RalB su 99.4 2.5E-12 5.3E-17 110.1 10.8 141 57-231 1-162 (164)
138 cd04177 RSR1 RSR1 subgroup. R 99.4 3.1E-12 6.6E-17 110.9 11.5 141 57-230 2-163 (168)
139 cd00876 Ras Ras family. The R 99.4 1.1E-12 2.3E-17 111.8 8.4 138 58-229 1-159 (160)
140 cd01892 Miro2 Miro2 subfamily. 99.4 3.6E-12 7.9E-17 110.9 11.4 144 55-230 3-165 (169)
141 cd04135 Tc10 TC10 subfamily. 99.4 2.6E-12 5.6E-17 111.6 10.4 148 57-229 1-172 (174)
142 cd00154 Rab Rab family. Rab G 99.4 1.9E-12 4.2E-17 109.3 9.2 138 57-227 1-158 (159)
143 PTZ00133 ADP-ribosylation fact 99.4 1.1E-12 2.3E-17 115.8 7.9 139 55-231 16-178 (182)
144 cd04118 Rab24 Rab24 subfamily. 99.4 3.7E-12 8E-17 112.9 11.2 146 57-231 1-166 (193)
145 cd04140 ARHI_like ARHI subfami 99.4 4.1E-12 8.9E-17 109.7 11.0 138 57-228 2-162 (165)
146 cd04117 Rab15 Rab15 subfamily. 99.4 3.1E-12 6.7E-17 110.3 10.1 140 57-229 1-160 (161)
147 PRK09866 hypothetical protein; 99.4 3.8E-12 8.3E-17 128.8 12.1 100 120-229 229-351 (741)
148 PLN00223 ADP-ribosylation fact 99.4 1.3E-12 2.8E-17 115.2 7.9 139 55-231 16-178 (181)
149 KOG1490 GTP-binding protein CR 99.4 1.1E-13 2.4E-18 134.7 1.0 105 54-178 166-295 (620)
150 cd04132 Rho4_like Rho4-like su 99.4 3.8E-12 8.3E-17 112.1 10.7 148 57-232 1-168 (187)
151 cd04116 Rab9 Rab9 subfamily. 99.4 3E-12 6.4E-17 110.9 9.8 141 56-229 5-169 (170)
152 cd04125 RabA_like RabA-like su 99.4 3.5E-12 7.5E-17 112.7 10.4 142 57-231 1-162 (188)
153 cd01874 Cdc42 Cdc42 subfamily. 99.4 4.1E-12 8.9E-17 111.3 10.7 146 57-228 2-172 (175)
154 PLN03110 Rab GTPase; Provision 99.4 2.9E-12 6.3E-17 116.2 9.8 145 55-232 11-175 (216)
155 cd04159 Arl10_like Arl10-like 99.4 1.3E-12 2.8E-17 110.5 7.0 135 58-228 1-158 (159)
156 PRK12317 elongation factor 1-a 99.4 1.2E-12 2.7E-17 130.4 7.8 100 55-178 5-153 (425)
157 cd04146 RERG_RasL11_like RERG/ 99.4 5.7E-12 1.2E-16 108.6 10.9 140 58-230 1-163 (165)
158 cd00157 Rho Rho (Ras homology) 99.4 5.5E-12 1.2E-16 108.9 10.8 147 57-228 1-170 (171)
159 KOG0094 GTPase Rab6/YPT6/Ryh1, 99.4 5.3E-12 1.2E-16 109.5 10.4 143 57-232 23-186 (221)
160 TIGR00487 IF-2 translation ini 99.3 4.7E-12 1E-16 130.2 11.6 147 53-228 84-247 (587)
161 smart00174 RHO Rho (Ras homolo 99.3 6.2E-12 1.3E-16 109.2 10.5 146 59-230 1-171 (174)
162 cd00877 Ran Ran (Ras-related n 99.3 7.8E-12 1.7E-16 108.4 11.1 141 57-232 1-160 (166)
163 cd01870 RhoA_like RhoA-like su 99.3 7E-12 1.5E-16 109.0 10.7 147 57-229 2-173 (175)
164 cd04137 RheB Rheb (Ras Homolog 99.3 4.2E-12 9.1E-17 111.1 9.3 142 57-232 2-164 (180)
165 cd04178 Nucleostemin_like Nucl 99.3 2E-12 4.3E-17 113.2 7.2 59 53-131 114-172 (172)
166 cd01876 YihA_EngB The YihA (En 99.3 4.5E-12 9.6E-17 108.3 8.8 147 58-230 1-170 (170)
167 cd04141 Rit_Rin_Ric Rit/Rin/Ri 99.3 8E-12 1.7E-16 109.1 10.5 141 57-231 3-164 (172)
168 PLN03108 Rab family protein; P 99.3 6.9E-12 1.5E-16 113.2 10.1 142 56-230 6-167 (210)
169 cd01871 Rac1_like Rac1-like su 99.3 1E-11 2.2E-16 108.7 10.6 148 57-229 2-173 (174)
170 TIGR02528 EutP ethanolamine ut 99.3 4.5E-12 9.8E-17 106.5 8.0 126 58-226 2-140 (142)
171 PRK13351 elongation factor G; 99.3 5.9E-12 1.3E-16 132.7 10.7 228 56-346 8-258 (687)
172 cd01888 eIF2_gamma eIF2-gamma 99.3 6E-12 1.3E-16 113.0 9.2 99 121-232 83-200 (203)
173 cd04128 Spg1 Spg1p. Spg1p (se 99.3 7.7E-12 1.7E-16 110.4 9.7 148 57-232 1-167 (182)
174 PRK05306 infB translation init 99.3 7.6E-12 1.6E-16 131.8 11.3 146 53-228 287-449 (787)
175 cd04161 Arl2l1_Arl13_like Arl2 99.3 4.7E-12 1E-16 109.9 8.2 93 58-178 1-114 (167)
176 cd04121 Rab40 Rab40 subfamily. 99.3 1E-11 2.2E-16 110.4 10.3 144 55-232 5-168 (189)
177 cd04115 Rab33B_Rab33A Rab33B/R 99.3 9.3E-12 2E-16 108.1 9.8 142 57-230 3-168 (170)
178 cd04162 Arl9_Arfrp2_like Arl9/ 99.3 8.1E-12 1.8E-16 108.2 9.3 94 58-178 1-113 (164)
179 cd04130 Wrch_1 Wrch-1 subfamil 99.3 1.2E-11 2.5E-16 107.8 10.2 146 57-227 1-170 (173)
180 TIGR00475 selB selenocysteine- 99.3 7.3E-12 1.6E-16 129.1 10.1 146 57-232 1-167 (581)
181 cd04143 Rhes_like Rhes_like su 99.3 1.3E-11 2.8E-16 114.3 10.2 141 57-230 1-170 (247)
182 CHL00071 tufA elongation facto 99.3 1.1E-11 2.3E-16 123.0 10.1 101 55-179 11-143 (409)
183 cd04126 Rab20 Rab20 subfamily. 99.3 2.2E-11 4.7E-16 110.8 11.0 94 57-178 1-114 (220)
184 cd04134 Rho3 Rho3 subfamily. 99.3 2.4E-11 5.1E-16 107.7 10.5 150 57-231 1-174 (189)
185 CHL00189 infB translation init 99.3 1.2E-11 2.6E-16 129.3 9.9 153 52-230 240-409 (742)
186 cd04104 p47_IIGP_like p47 (47- 99.3 2.1E-11 4.6E-16 108.9 10.2 100 56-177 1-120 (197)
187 PRK00741 prfC peptide chain re 99.3 8.5E-12 1.8E-16 127.0 8.2 100 56-163 10-114 (526)
188 cd04148 RGK RGK subfamily. Th 99.3 2.9E-11 6.4E-16 110.0 10.6 139 57-231 1-163 (221)
189 PF00025 Arf: ADP-ribosylation 99.3 3.2E-11 7E-16 105.7 10.3 140 54-229 12-174 (175)
190 cd01853 Toc34_like Toc34-like 99.2 1.6E-11 3.4E-16 113.6 8.2 93 52-161 27-124 (249)
191 cd01875 RhoG RhoG subfamily. 99.2 4.4E-11 9.5E-16 106.3 10.6 151 56-231 3-177 (191)
192 TIGR01393 lepA GTP-binding pro 99.2 3.7E-11 7.9E-16 124.1 11.5 146 57-232 4-181 (595)
193 cd01858 NGP_1 NGP-1. Autoanti 99.2 1.2E-11 2.5E-16 106.5 6.5 57 55-131 101-157 (157)
194 cd04133 Rop_like Rop subfamily 99.2 6.8E-11 1.5E-15 103.9 11.4 149 57-230 2-172 (176)
195 PRK12735 elongation factor Tu; 99.2 1.9E-11 4.1E-16 120.7 8.6 101 54-178 10-142 (396)
196 PLN03127 Elongation factor Tu; 99.2 7E-11 1.5E-15 118.2 12.7 104 51-178 56-191 (447)
197 PLN03071 GTP-binding nuclear p 99.2 5.5E-11 1.2E-15 108.1 10.9 142 55-232 12-173 (219)
198 TIGR00491 aIF-2 translation in 99.2 3.9E-11 8.4E-16 123.3 10.8 115 55-179 3-136 (590)
199 PRK10512 selenocysteinyl-tRNA- 99.2 3.9E-11 8.4E-16 124.3 10.8 147 57-232 1-167 (614)
200 PRK12736 elongation factor Tu; 99.2 3.1E-11 6.7E-16 119.1 8.9 150 53-231 9-201 (394)
201 cd04131 Rnd Rnd subfamily. Th 99.2 7.6E-11 1.6E-15 103.7 10.4 146 57-228 2-173 (178)
202 KOG0092 GTPase Rab5/YPT51 and 99.2 5.9E-11 1.3E-15 102.9 9.4 141 55-234 4-170 (200)
203 PF10662 PduV-EutP: Ethanolami 99.2 7.4E-11 1.6E-15 99.2 9.5 128 57-227 2-142 (143)
204 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 99.2 1E-10 2.2E-15 106.5 11.0 100 57-180 2-121 (222)
205 cd01883 EF1_alpha Eukaryotic e 99.2 1.4E-11 3.1E-16 111.9 4.8 96 58-177 1-150 (219)
206 KOG0073 GTP-binding ADP-ribosy 99.2 9.3E-11 2E-15 99.0 8.8 101 49-177 9-130 (185)
207 COG1161 Predicted GTPases [Gen 99.2 2.9E-11 6.3E-16 116.0 6.6 63 54-136 130-192 (322)
208 TIGR00991 3a0901s02IAP34 GTP-b 99.2 7.8E-11 1.7E-15 111.2 8.8 85 55-160 37-127 (313)
209 KOG0095 GTPase Rab30, small G 99.2 3.7E-10 8E-15 93.9 11.7 143 56-231 7-169 (213)
210 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 99.2 1.6E-10 3.5E-15 102.0 10.3 148 56-229 5-178 (182)
211 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 99.2 1.5E-10 3.3E-15 106.0 10.3 151 55-231 12-188 (232)
212 PRK05506 bifunctional sulfate 99.2 7.4E-11 1.6E-15 123.2 9.2 117 55-178 23-171 (632)
213 KOG0084 GTPase Rab1/YPT1, smal 99.2 1.3E-10 2.9E-15 101.1 9.2 145 55-233 8-174 (205)
214 COG0480 FusA Translation elong 99.2 4.8E-11 1E-15 124.0 7.5 235 55-345 9-257 (697)
215 cd01849 YlqF_related_GTPase Yl 99.2 7.2E-11 1.6E-15 101.4 7.1 58 54-131 98-155 (155)
216 PRK09563 rbgA GTPase YlqF; Rev 99.2 7E-11 1.5E-15 111.8 7.6 62 54-135 119-180 (287)
217 PRK04004 translation initiatio 99.1 2.6E-10 5.6E-15 117.6 12.0 114 55-178 5-137 (586)
218 cd04129 Rho2 Rho2 subfamily. 99.1 3.4E-10 7.5E-15 100.0 11.1 150 57-231 2-173 (187)
219 TIGR00485 EF-Tu translation el 99.1 1.4E-10 3.1E-15 114.4 9.6 101 55-179 11-143 (394)
220 PF04548 AIG1: AIG1 family; I 99.1 5.2E-10 1.1E-14 101.2 12.4 90 57-163 1-95 (212)
221 PLN03126 Elongation factor Tu; 99.1 2E-10 4.3E-15 115.6 10.4 102 53-178 78-211 (478)
222 PRK00049 elongation factor Tu; 99.1 1.1E-10 2.3E-15 115.4 8.2 100 55-178 11-142 (396)
223 PRK05433 GTP-binding protein L 99.1 3.1E-10 6.7E-15 117.4 11.7 146 57-232 8-185 (600)
224 PRK05124 cysN sulfate adenylyl 99.1 1.1E-10 2.4E-15 117.7 8.1 121 51-178 22-174 (474)
225 cd00882 Ras_like_GTPase Ras-li 99.1 2E-10 4.3E-15 95.1 8.1 95 61-178 1-116 (157)
226 TIGR00483 EF-1_alpha translati 99.1 1.1E-10 2.5E-15 116.4 7.5 100 55-178 6-155 (426)
227 TIGR01394 TypA_BipA GTP-bindin 99.1 4.2E-10 9.1E-15 116.1 11.9 143 58-232 3-192 (594)
228 TIGR02836 spore_IV_A stage IV 99.1 3.6E-10 7.8E-15 109.4 10.6 113 54-178 15-194 (492)
229 KOG0075 GTP-binding ADP-ribosy 99.1 4.3E-11 9.3E-16 99.2 3.6 140 55-230 19-181 (186)
230 PRK10218 GTP-binding protein; 99.1 7E-10 1.5E-14 114.5 13.0 147 57-232 6-196 (607)
231 PF00350 Dynamin_N: Dynamin fa 99.1 3.1E-10 6.6E-15 98.2 8.7 101 59-163 1-140 (168)
232 cd04103 Centaurin_gamma Centau 99.1 5.1E-10 1.1E-14 96.4 10.0 135 57-229 1-157 (158)
233 TIGR03596 GTPase_YlqF ribosome 99.1 1.6E-10 3.5E-15 108.8 7.2 61 55-135 117-177 (276)
234 PF00071 Ras: Ras family; Int 99.1 5E-10 1.1E-14 95.9 9.6 139 58-230 1-160 (162)
235 PF08477 Miro: Miro-like prote 99.1 2.2E-10 4.7E-15 93.3 6.4 82 58-163 1-85 (119)
236 cd01855 YqeH YqeH. YqeH is an 99.1 1.7E-10 3.6E-15 102.4 5.8 57 55-131 126-190 (190)
237 PTZ00132 GTP-binding nuclear p 99.1 3.1E-09 6.7E-14 96.0 14.0 147 55-236 8-173 (215)
238 KOG0078 GTP-binding protein SE 99.1 1.2E-09 2.6E-14 96.4 10.8 145 54-231 10-174 (207)
239 TIGR03680 eif2g_arch translati 99.1 5.2E-10 1.1E-14 110.9 9.2 163 55-231 3-196 (406)
240 cd01885 EF2 EF2 (for archaea a 99.1 7.2E-10 1.6E-14 100.9 9.4 106 58-177 2-138 (222)
241 cd04105 SR_beta Signal recogni 99.0 1.3E-09 2.8E-14 97.9 10.8 83 57-163 1-84 (203)
242 TIGR02034 CysN sulfate adenyly 99.0 3.3E-10 7.2E-15 112.3 7.5 115 57-178 1-147 (406)
243 KOG0080 GTPase Rab18, small G 99.0 1.4E-09 3E-14 91.7 9.9 143 55-233 10-176 (209)
244 PRK12740 elongation factor G; 99.0 9.1E-10 2E-14 115.9 10.7 47 301-347 197-243 (668)
245 cd04167 Snu114p Snu114p subfam 99.0 1.1E-09 2.4E-14 99.0 9.8 101 58-177 2-136 (213)
246 cd01857 HSR1_MMR1 HSR1/MMR1. 99.0 4.2E-10 9.1E-15 95.1 6.5 55 58-132 85-139 (141)
247 smart00176 RAN Ran (Ras-relate 99.0 1.4E-09 3E-14 97.6 9.2 134 62-232 1-155 (200)
248 KOG2484 GTPase [General functi 99.0 3.2E-09 7E-14 101.5 12.0 73 44-136 240-312 (435)
249 TIGR00503 prfC peptide chain r 99.0 1.7E-09 3.6E-14 110.3 10.5 98 55-163 10-115 (527)
250 PRK04000 translation initiatio 99.0 1.3E-09 2.8E-14 108.1 9.4 165 54-232 7-202 (411)
251 KOG0394 Ras-related GTPase [Ge 99.0 1.7E-09 3.6E-14 93.3 8.4 142 54-230 7-177 (210)
252 KOG1424 Predicted GTP-binding 99.0 4.6E-10 1E-14 110.2 5.2 61 56-136 314-374 (562)
253 cd01856 YlqF YlqF. Proteins o 99.0 1.3E-09 2.8E-14 95.2 7.1 59 54-132 113-171 (171)
254 TIGR00993 3a0901s04IAP86 chlor 99.0 1.9E-09 4.2E-14 109.8 9.1 90 55-162 117-212 (763)
255 PF09439 SRPRB: Signal recogni 99.0 4.6E-09 9.9E-14 92.2 10.1 96 57-178 4-126 (181)
256 KOG0098 GTPase Rab2, small G p 98.9 8.6E-09 1.9E-13 89.1 10.5 140 56-230 6-167 (216)
257 cd01873 RhoBTB RhoBTB subfamil 98.9 3.6E-09 7.9E-14 94.5 8.5 154 56-228 2-193 (195)
258 KOG0462 Elongation factor-type 98.9 7.6E-09 1.7E-13 102.3 11.1 143 57-232 61-236 (650)
259 KOG2423 Nucleolar GTPase [Gene 98.9 4.1E-10 8.8E-15 107.2 1.8 100 15-136 267-367 (572)
260 cd01850 CDC_Septin CDC/Septin. 98.9 9.4E-09 2E-13 96.7 10.8 29 56-84 4-32 (276)
261 COG1100 GTPase SAR1 and relate 98.9 7.8E-09 1.7E-13 93.2 9.7 101 57-180 6-127 (219)
262 KOG0093 GTPase Rab3, small G p 98.9 1.2E-08 2.7E-13 84.8 9.6 145 54-231 19-183 (193)
263 PTZ00141 elongation factor 1- 98.9 3E-09 6.5E-14 106.5 7.1 97 55-176 6-157 (446)
264 TIGR03597 GTPase_YqeH ribosome 98.9 2.8E-09 6E-14 104.0 6.1 59 56-134 154-217 (360)
265 PRK13796 GTPase YqeH; Provisio 98.9 2.9E-09 6.2E-14 104.1 6.1 59 56-134 160-223 (365)
266 cd01851 GBP Guanylate-binding 98.8 8.1E-09 1.8E-13 94.2 8.0 90 57-161 8-101 (224)
267 smart00053 DYNc Dynamin, GTPas 98.8 2.6E-08 5.6E-13 91.6 11.2 105 55-163 25-174 (240)
268 cd04165 GTPBP1_like GTPBP1-lik 98.8 1.2E-08 2.5E-13 93.2 8.6 52 120-178 83-152 (224)
269 cd01882 BMS1 Bms1. Bms1 is an 98.8 1.7E-08 3.7E-13 92.2 9.4 79 54-163 37-115 (225)
270 cd01859 MJ1464 MJ1464. This f 98.8 1.1E-08 2.4E-13 87.7 6.5 57 55-131 100-156 (156)
271 cd04102 RabL3 RabL3 (Rab-like3 98.8 2.4E-08 5.1E-13 89.7 8.9 87 57-163 1-89 (202)
272 PTZ00416 elongation factor 2; 98.8 1.5E-08 3.3E-13 108.7 8.7 107 57-177 20-157 (836)
273 KOG0087 GTPase Rab11/YPT3, sma 98.8 2.7E-08 5.9E-13 87.7 8.6 144 54-230 12-175 (222)
274 PLN00023 GTP-binding protein; 98.8 3.2E-08 6.9E-13 94.2 9.6 98 56-163 21-118 (334)
275 KOG0091 GTPase Rab39, small G 98.8 2.4E-08 5.2E-13 84.5 7.7 139 56-226 8-168 (213)
276 PRK13768 GTPase; Provisional 98.8 2.8E-08 6.1E-13 92.4 8.7 110 121-233 97-249 (253)
277 PTZ00327 eukaryotic translatio 98.7 3.1E-08 6.7E-13 99.3 9.4 165 55-232 33-234 (460)
278 KOG1145 Mitochondrial translat 98.7 3E-08 6.4E-13 98.2 8.5 151 50-229 147-314 (683)
279 KOG0070 GTP-binding ADP-ribosy 98.7 4.9E-08 1.1E-12 84.5 8.7 139 55-231 16-178 (181)
280 TIGR00490 aEF-2 translation el 98.7 1.9E-08 4E-13 106.6 7.4 102 56-177 19-151 (720)
281 KOG0086 GTPase Rab4, small G p 98.7 6.5E-08 1.4E-12 81.0 9.0 138 56-227 9-167 (214)
282 COG5256 TEF1 Translation elong 98.7 1.4E-08 3E-13 98.0 5.7 99 55-178 6-159 (428)
283 PLN00116 translation elongatio 98.7 3E-08 6.5E-13 106.7 8.7 114 56-177 19-163 (843)
284 PRK12289 GTPase RsgA; Reviewed 98.7 1.4E-08 3E-13 98.5 5.4 58 58-135 174-238 (352)
285 COG0481 LepA Membrane GTPase L 98.7 6.1E-08 1.3E-12 94.7 9.3 145 57-232 10-187 (603)
286 PRK12288 GTPase RsgA; Reviewed 98.7 1.7E-08 3.6E-13 97.9 5.4 58 58-135 207-271 (347)
287 PLN00043 elongation factor 1-a 98.7 4E-08 8.8E-13 98.4 6.9 115 55-177 6-158 (447)
288 PRK07560 elongation factor EF- 98.7 5.5E-08 1.2E-12 103.3 8.2 102 56-177 20-152 (731)
289 KOG0079 GTP-binding protein H- 98.6 6E-08 1.3E-12 80.8 6.2 140 56-230 8-168 (198)
290 PF04670 Gtr1_RagA: Gtr1/RagA 98.6 1.7E-07 3.8E-12 85.6 9.4 88 58-163 1-88 (232)
291 COG0532 InfB Translation initi 98.6 1.2E-07 2.6E-12 94.2 8.8 148 55-229 4-168 (509)
292 TIGR00157 ribosome small subun 98.6 5.2E-08 1.1E-12 90.1 5.7 58 57-135 121-185 (245)
293 KOG0088 GTPase Rab21, small G 98.6 6.4E-08 1.4E-12 81.5 5.5 141 55-230 12-174 (218)
294 KOG0465 Mitochondrial elongati 98.6 4E-08 8.6E-13 98.3 4.9 231 57-345 40-287 (721)
295 COG2229 Predicted GTPase [Gene 98.6 5.4E-07 1.2E-11 78.0 10.8 87 55-164 9-104 (187)
296 KOG2485 Conserved ATP/GTP bind 98.6 1.1E-07 2.3E-12 88.7 6.6 72 48-136 135-211 (335)
297 PF05049 IIGP: Interferon-indu 98.5 9.5E-08 2.1E-12 92.7 5.1 85 54-161 33-124 (376)
298 KOG0090 Signal recognition par 98.5 3.1E-07 6.7E-12 81.3 7.5 84 52-163 34-120 (238)
299 PRK00098 GTPase RsgA; Reviewed 98.5 1.7E-07 3.8E-12 89.1 5.8 59 56-134 164-229 (298)
300 PRK09435 membrane ATPase/prote 98.5 4.7E-07 1E-11 87.0 8.4 94 120-231 148-260 (332)
301 KOG0395 Ras-related GTPase [Ge 98.5 6.1E-07 1.3E-11 80.2 8.4 142 56-231 3-165 (196)
302 COG5257 GCD11 Translation init 98.4 1.3E-06 2.8E-11 81.9 9.8 155 55-231 9-202 (415)
303 COG4917 EutP Ethanolamine util 98.4 1.2E-06 2.6E-11 71.3 8.2 128 57-227 2-142 (148)
304 PF03193 DUF258: Protein of un 98.4 2.6E-07 5.7E-12 79.5 4.4 27 57-83 36-62 (161)
305 KOG0076 GTP-binding ADP-ribosy 98.4 1.1E-06 2.4E-11 75.3 7.8 84 55-163 16-104 (197)
306 COG4108 PrfC Peptide chain rel 98.4 4.2E-07 9E-12 88.2 5.8 161 58-258 14-187 (528)
307 KOG0083 GTPase Rab26/Rab37, sm 98.4 1.1E-07 2.5E-12 77.8 1.5 139 61-232 2-161 (192)
308 KOG1532 GTPase XAB1, interacts 98.3 1.3E-06 2.8E-11 80.2 7.5 174 54-233 17-266 (366)
309 cd01854 YjeQ_engC YjeQ/EngC. 98.3 6E-07 1.3E-11 85.0 5.5 30 57-86 162-191 (287)
310 KOG0464 Elongation factor G [T 98.3 9.9E-07 2.2E-11 84.9 6.7 211 57-321 38-268 (753)
311 KOG0074 GTP-binding ADP-ribosy 98.3 1.9E-06 4E-11 71.5 7.0 81 54-161 15-95 (185)
312 PF00735 Septin: Septin; Inte 98.3 4.1E-06 9E-11 79.0 10.3 27 56-82 4-30 (281)
313 KOG0077 Vesicle coat complex C 98.3 7.7E-07 1.7E-11 75.7 4.6 81 55-163 19-99 (193)
314 KOG4252 GTP-binding protein [S 98.3 6.1E-07 1.3E-11 77.2 3.7 142 56-230 20-180 (246)
315 COG5019 CDC3 Septin family pro 98.2 1.1E-05 2.4E-10 77.1 11.7 77 46-135 13-96 (373)
316 PF03029 ATP_bind_1: Conserved 98.2 8.3E-07 1.8E-11 81.7 3.4 58 122-180 92-172 (238)
317 KOG0458 Elongation factor 1 al 98.2 3.2E-06 7E-11 84.7 7.4 112 56-178 177-329 (603)
318 KOG0461 Selenocysteine-specifi 98.2 1.4E-05 3.1E-10 75.6 10.4 110 55-179 6-137 (522)
319 KOG3883 Ras family small GTPas 98.2 4.2E-05 9E-10 64.4 11.9 93 51-163 4-96 (198)
320 KOG1547 Septin CDC10 and relat 98.1 0.00016 3.5E-09 65.5 15.8 71 52-136 42-119 (336)
321 TIGR00750 lao LAO/AO transport 98.1 3.3E-06 7.1E-11 80.5 5.4 98 120-231 126-238 (300)
322 KOG0097 GTPase Rab14, small G 98.1 1.3E-05 2.8E-10 66.4 7.9 84 56-163 11-95 (215)
323 KOG1707 Predicted Ras related/ 98.1 4.1E-05 8.8E-10 77.0 12.6 144 55-230 8-174 (625)
324 COG1217 TypA Predicted membran 98.1 1.1E-05 2.4E-10 79.1 7.5 107 57-177 6-133 (603)
325 KOG0071 GTP-binding ADP-ribosy 98.0 3.8E-05 8.3E-10 63.7 9.4 80 56-163 17-96 (180)
326 KOG0393 Ras-related small GTPa 98.0 1.7E-05 3.7E-10 70.3 7.6 102 56-180 4-125 (198)
327 KOG0081 GTPase Rab27, small G 98.0 1.7E-06 3.7E-11 73.0 1.2 108 57-178 10-138 (219)
328 PRK14845 translation initiatio 98.0 1.1E-05 2.4E-10 87.6 7.7 107 59-179 468-593 (1049)
329 KOG0448 Mitofusin 1 GTPase, in 98.0 2.2E-05 4.8E-10 80.1 9.2 123 52-179 105-276 (749)
330 COG1162 Predicted GTPases [Gen 98.0 6E-06 1.3E-10 77.6 4.7 27 57-83 165-191 (301)
331 KOG0468 U5 snRNP-specific prot 98.0 2.6E-05 5.7E-10 79.1 9.3 102 57-177 129-262 (971)
332 KOG2486 Predicted GTPase [Gene 98.0 2.3E-05 5E-10 72.3 8.1 57 55-131 135-193 (320)
333 TIGR00073 hypB hydrogenase acc 98.0 3.2E-05 6.9E-10 69.6 8.8 157 55-229 21-205 (207)
334 KOG1954 Endocytosis/signaling 98.0 3.9E-05 8.5E-10 73.2 9.5 123 57-181 59-228 (532)
335 TIGR00101 ureG urease accessor 98.0 1.8E-05 3.9E-10 70.9 6.7 92 121-230 92-195 (199)
336 KOG2655 Septin family protein 97.9 6.7E-05 1.4E-09 72.3 10.4 33 47-79 12-44 (366)
337 COG3276 SelB Selenocysteine-sp 97.9 3.8E-05 8.2E-10 75.0 8.3 140 57-230 1-161 (447)
338 PTZ00099 rab6; Provisional 97.9 2.6E-05 5.7E-10 68.4 6.2 95 121-232 29-143 (176)
339 KOG0072 GTP-binding ADP-ribosy 97.9 2.2E-05 4.7E-10 65.5 5.0 141 55-231 17-179 (182)
340 PRK10463 hydrogenase nickel in 97.8 6.8E-05 1.5E-09 70.6 8.1 25 54-78 102-126 (290)
341 PF08438 MMR_HSR1_C: GTPase of 97.8 4.3E-05 9.2E-10 61.3 5.1 77 263-347 1-108 (109)
342 PF03308 ArgK: ArgK protein; 97.7 3.3E-05 7.2E-10 71.1 4.5 23 55-77 28-50 (266)
343 PRK01889 GTPase RsgA; Reviewed 97.7 2.5E-05 5.5E-10 76.2 3.7 30 56-85 195-224 (356)
344 COG0050 TufB GTPases - transla 97.7 0.00013 2.8E-09 67.9 7.3 104 54-182 10-146 (394)
345 cd03112 CobW_like The function 97.6 8.2E-05 1.8E-09 64.1 4.3 43 120-162 86-129 (158)
346 COG1703 ArgK Putative periplas 97.6 8E-05 1.7E-09 69.6 4.3 23 55-77 50-72 (323)
347 KOG3886 GTP-binding protein [S 97.5 0.00011 2.3E-09 66.2 3.8 88 55-164 3-94 (295)
348 COG2895 CysN GTPases - Sulfate 97.5 9.5E-05 2.1E-09 70.4 3.6 155 55-220 5-192 (431)
349 COG1136 SalX ABC-type antimicr 97.4 0.0044 9.4E-08 56.4 13.7 24 56-79 31-54 (226)
350 COG5192 BMS1 GTP-binding prote 97.4 0.0002 4.3E-09 71.8 4.7 79 54-163 67-145 (1077)
351 TIGR01425 SRP54_euk signal rec 97.3 0.00046 1E-08 68.5 6.4 22 56-77 100-121 (429)
352 KOG1144 Translation initiation 97.3 0.00034 7.3E-09 72.1 5.4 116 55-180 474-608 (1064)
353 KOG0467 Translation elongation 97.2 0.0014 3E-08 67.9 9.3 120 57-197 10-151 (887)
354 PF00448 SRP54: SRP54-type pro 97.1 0.00052 1.1E-08 61.3 4.6 22 57-78 2-23 (196)
355 cd03114 ArgK-like The function 97.1 0.0013 2.9E-08 56.0 6.8 20 59-78 2-21 (148)
356 COG0378 HypB Ni2+-binding GTPa 97.1 0.0013 2.8E-08 58.0 6.9 89 121-229 97-199 (202)
357 PRK14722 flhF flagellar biosyn 97.1 0.00092 2E-08 65.4 6.3 25 55-79 136-160 (374)
358 KOG0469 Elongation factor 2 [T 96.9 0.0017 3.6E-08 64.5 6.4 113 58-177 21-163 (842)
359 PRK14737 gmk guanylate kinase; 96.8 0.0012 2.5E-08 58.6 3.6 44 56-99 4-47 (186)
360 cd00071 GMPK Guanosine monopho 96.8 0.0012 2.6E-08 55.4 3.3 40 59-98 2-42 (137)
361 PRK14721 flhF flagellar biosyn 96.8 0.0014 3.1E-08 65.0 4.3 25 55-79 190-214 (420)
362 PRK11889 flhF flagellar biosyn 96.7 0.0029 6.4E-08 62.1 6.3 23 56-78 241-263 (436)
363 TIGR03263 guanyl_kin guanylate 96.7 0.0013 2.8E-08 57.4 3.6 42 57-98 2-43 (180)
364 COG0194 Gmk Guanylate kinase [ 96.7 0.00085 1.8E-08 58.8 2.3 45 55-100 3-47 (191)
365 PRK10416 signal recognition pa 96.7 0.0029 6.2E-08 60.8 5.9 23 56-78 114-136 (318)
366 PRK14974 cell division protein 96.7 0.0021 4.5E-08 62.2 4.9 23 55-77 139-161 (336)
367 KOG3859 Septins (P-loop GTPase 96.6 0.028 6.1E-07 52.2 11.2 69 54-137 40-111 (406)
368 KOG1533 Predicted GTPase [Gene 96.6 0.0045 9.8E-08 56.1 5.9 20 58-77 4-23 (290)
369 COG3840 ThiQ ABC-type thiamine 96.6 0.0023 5E-08 56.1 3.6 23 56-78 25-47 (231)
370 PRK00300 gmk guanylate kinase; 96.5 0.0022 4.8E-08 57.1 3.7 44 55-98 4-47 (205)
371 COG1116 TauB ABC-type nitrate/ 96.5 0.0016 3.6E-08 59.6 2.6 25 57-81 30-54 (248)
372 PRK12726 flagellar biosynthesi 96.5 0.0022 4.7E-08 62.7 3.5 24 55-78 205-228 (407)
373 PRK05703 flhF flagellar biosyn 96.5 0.0023 5.1E-08 63.9 3.9 23 56-78 221-243 (424)
374 TIGR00064 ftsY signal recognit 96.5 0.0045 9.7E-08 58.2 5.3 22 56-77 72-93 (272)
375 COG1134 TagH ABC-type polysacc 96.5 0.0028 6.2E-08 57.8 3.8 37 55-103 52-88 (249)
376 PF13207 AAA_17: AAA domain; P 96.4 0.0026 5.7E-08 51.5 3.1 20 58-77 1-20 (121)
377 PF00005 ABC_tran: ABC transpo 96.4 0.0026 5.6E-08 52.8 2.9 25 55-79 10-34 (137)
378 COG0411 LivG ABC-type branched 96.4 0.0011 2.4E-08 60.4 0.7 37 55-103 29-65 (250)
379 KOG0466 Translation initiation 96.4 0.0044 9.6E-08 58.1 4.6 163 55-232 37-242 (466)
380 KOG1673 Ras GTPases [General f 96.4 0.0094 2E-07 50.6 6.0 145 55-230 19-185 (205)
381 PRK14738 gmk guanylate kinase; 96.3 0.0034 7.3E-08 56.4 3.6 43 55-97 12-54 (206)
382 COG1618 Predicted nucleotide k 96.3 0.0049 1.1E-07 52.8 4.3 25 54-78 3-27 (179)
383 KOG2749 mRNA cleavage and poly 96.3 0.0063 1.4E-07 58.3 5.4 52 52-103 99-150 (415)
384 PRK06731 flhF flagellar biosyn 96.3 0.004 8.7E-08 58.4 3.9 25 55-79 74-98 (270)
385 PRK12724 flagellar biosynthesi 96.3 0.0032 6.9E-08 62.3 3.3 22 57-78 224-245 (432)
386 TIGR03348 VI_IcmF type VI secr 96.2 0.0062 1.4E-07 68.3 5.8 111 57-182 112-261 (1169)
387 KOG0447 Dynamin-like GTP bindi 96.2 0.03 6.5E-07 56.4 9.7 108 56-163 308-461 (980)
388 PRK07261 topology modulation p 96.2 0.0036 7.7E-08 54.6 2.9 21 57-77 1-21 (171)
389 COG4586 ABC-type uncharacteriz 96.2 0.1 2.2E-06 48.7 12.4 28 53-80 47-74 (325)
390 COG1120 FepC ABC-type cobalami 96.1 0.0086 1.9E-07 55.6 5.1 38 56-105 28-65 (258)
391 COG1101 PhnK ABC-type uncharac 96.1 0.0051 1.1E-07 55.3 3.3 21 58-78 34-54 (263)
392 cd03116 MobB Molybdenum is an 96.0 0.0068 1.5E-07 52.3 3.9 21 57-77 2-22 (159)
393 PF13555 AAA_29: P-loop contai 96.0 0.0055 1.2E-07 44.1 2.6 20 58-77 25-44 (62)
394 cd03115 SRP The signal recogni 96.0 0.008 1.7E-07 52.1 4.3 20 58-77 2-21 (173)
395 KOG0054 Multidrug resistance-a 96.0 0.0058 1.3E-07 68.3 4.1 38 54-103 1164-1201(1381)
396 cd01858 NGP_1 NGP-1. Autoanti 96.0 0.013 2.7E-07 50.1 5.4 73 145-230 2-94 (157)
397 COG3638 ABC-type phosphate/pho 96.0 0.0064 1.4E-07 55.3 3.6 35 56-102 30-64 (258)
398 PRK12727 flagellar biosynthesi 96.0 0.0054 1.2E-07 62.3 3.5 24 55-78 349-372 (559)
399 cd02038 FleN-like FleN is a me 96.0 0.015 3.3E-07 48.7 5.6 32 121-161 45-76 (139)
400 TIGR00960 3a0501s02 Type II (G 95.9 0.0083 1.8E-07 54.0 4.1 25 55-79 28-52 (216)
401 cd02042 ParA ParA and ParB of 95.9 0.019 4.2E-07 45.2 5.7 69 59-161 2-71 (104)
402 TIGR03499 FlhF flagellar biosy 95.9 0.006 1.3E-07 57.6 3.1 23 56-78 194-216 (282)
403 cd03261 ABC_Org_Solvent_Resist 95.9 0.0088 1.9E-07 54.6 4.1 25 55-79 25-49 (235)
404 cd02019 NK Nucleoside/nucleoti 95.9 0.0067 1.4E-07 44.5 2.7 19 59-77 2-20 (69)
405 COG0563 Adk Adenylate kinase a 95.9 0.0061 1.3E-07 53.6 2.9 21 57-77 1-21 (178)
406 cd03221 ABCF_EF-3 ABCF_EF-3 E 95.9 0.009 1.9E-07 50.5 3.7 25 55-79 25-49 (144)
407 PF02263 GBP: Guanylate-bindin 95.8 0.023 4.9E-07 53.0 6.7 64 57-133 22-86 (260)
408 PRK00771 signal recognition pa 95.8 0.013 2.8E-07 58.7 5.3 23 55-77 94-116 (437)
409 TIGR03608 L_ocin_972_ABC putat 95.8 0.0099 2.1E-07 53.0 4.1 25 55-79 23-47 (206)
410 KOG0460 Mitochondrial translat 95.8 0.015 3.2E-07 55.6 5.3 105 53-182 51-188 (449)
411 cd03259 ABC_Carb_Solutes_like 95.8 0.01 2.2E-07 53.3 4.1 25 55-79 25-49 (213)
412 PRK13541 cytochrome c biogenes 95.8 0.0098 2.1E-07 52.7 4.0 25 55-79 25-49 (195)
413 KOG4423 GTP-binding protein-li 95.8 0.0008 1.7E-08 58.6 -2.9 87 53-163 22-110 (229)
414 PRK10078 ribose 1,5-bisphospho 95.8 0.0075 1.6E-07 53.1 3.1 23 56-78 2-24 (186)
415 cd03264 ABC_drug_resistance_li 95.8 0.0067 1.4E-07 54.4 2.8 24 55-79 25-48 (211)
416 cd03225 ABC_cobalt_CbiO_domain 95.8 0.0068 1.5E-07 54.3 2.8 25 55-79 26-50 (211)
417 cd03226 ABC_cobalt_CbiO_domain 95.8 0.011 2.3E-07 52.9 4.1 25 55-79 25-49 (205)
418 PRK12723 flagellar biosynthesi 95.7 0.017 3.7E-07 57.0 5.6 23 56-78 174-196 (388)
419 cd03255 ABC_MJ0796_Lo1CDE_FtsE 95.7 0.0072 1.6E-07 54.4 2.8 25 55-79 29-53 (218)
420 cd03224 ABC_TM1139_LivF_branch 95.7 0.01 2.2E-07 53.6 3.8 25 55-79 25-49 (222)
421 TIGR01166 cbiO cobalt transpor 95.7 0.0068 1.5E-07 53.4 2.6 25 55-79 17-41 (190)
422 TIGR02673 FtsE cell division A 95.7 0.0074 1.6E-07 54.2 2.8 25 55-79 27-51 (214)
423 cd03222 ABC_RNaseL_inhibitor T 95.7 0.0081 1.8E-07 52.8 3.0 26 54-79 23-48 (177)
424 cd03265 ABC_DrrA DrrA is the A 95.7 0.0075 1.6E-07 54.5 2.8 25 55-79 25-49 (220)
425 TIGR02211 LolD_lipo_ex lipopro 95.7 0.011 2.4E-07 53.3 3.9 25 55-79 30-54 (221)
426 TIGR00235 udk uridine kinase. 95.7 0.0083 1.8E-07 53.8 3.0 24 55-78 5-28 (207)
427 cd01983 Fer4_NifH The Fer4_Nif 95.7 0.026 5.7E-07 42.9 5.5 67 59-161 2-68 (99)
428 KOG3887 Predicted small GTPase 95.7 0.019 4.1E-07 52.3 5.2 87 55-164 26-114 (347)
429 PRK08118 topology modulation p 95.7 0.0088 1.9E-07 52.0 3.0 21 57-77 2-22 (167)
430 PRK14530 adenylate kinase; Pro 95.7 0.0087 1.9E-07 54.0 3.1 23 55-77 2-24 (215)
431 cd03257 ABC_NikE_OppD_transpor 95.7 0.011 2.4E-07 53.5 3.8 25 55-79 30-54 (228)
432 PF13671 AAA_33: AAA domain; P 95.6 0.0089 1.9E-07 49.7 2.9 19 59-77 2-20 (143)
433 cd03215 ABC_Carb_Monos_II This 95.6 0.012 2.6E-07 51.6 3.8 25 55-79 25-49 (182)
434 PRK05480 uridine/cytidine kina 95.6 0.01 2.2E-07 53.3 3.3 24 55-78 5-28 (209)
435 cd03262 ABC_HisP_GlnQ_permease 95.6 0.0087 1.9E-07 53.6 2.8 25 55-79 25-49 (213)
436 PRK11629 lolD lipoprotein tran 95.6 0.014 3E-07 53.3 4.2 25 55-79 34-58 (233)
437 cd03292 ABC_FtsE_transporter F 95.6 0.0088 1.9E-07 53.7 2.8 25 55-79 26-50 (214)
438 PF13521 AAA_28: AAA domain; P 95.6 0.007 1.5E-07 52.0 2.1 20 58-77 1-20 (163)
439 cd03263 ABC_subfamily_A The AB 95.6 0.0088 1.9E-07 53.9 2.8 25 55-79 27-51 (220)
440 cd03260 ABC_PstB_phosphate_tra 95.6 0.0091 2E-07 54.2 2.9 25 55-79 25-49 (227)
441 COG1131 CcmA ABC-type multidru 95.6 0.012 2.7E-07 55.8 3.9 24 56-79 31-54 (293)
442 cd03218 ABC_YhbG The ABC trans 95.6 0.009 1.9E-07 54.4 2.8 25 55-79 25-49 (232)
443 cd01130 VirB11-like_ATPase Typ 95.5 0.011 2.3E-07 52.3 3.1 24 55-78 24-47 (186)
444 PRK10751 molybdopterin-guanine 95.5 0.01 2.2E-07 51.9 2.9 23 55-77 5-27 (173)
445 cd03293 ABC_NrtD_SsuB_transpor 95.5 0.0093 2E-07 53.9 2.8 25 55-79 29-53 (220)
446 cd03269 ABC_putative_ATPase Th 95.5 0.0095 2.1E-07 53.4 2.8 25 55-79 25-49 (210)
447 cd03229 ABC_Class3 This class 95.5 0.0097 2.1E-07 52.0 2.8 25 55-79 25-49 (178)
448 TIGR01189 ccmA heme ABC export 95.5 0.0097 2.1E-07 52.9 2.8 25 55-79 25-49 (198)
449 TIGR03410 urea_trans_UrtE urea 95.5 0.013 2.8E-07 53.3 3.7 25 55-79 25-49 (230)
450 cd03231 ABC_CcmA_heme_exporter 95.5 0.0099 2.2E-07 53.0 2.8 25 55-79 25-49 (201)
451 cd03268 ABC_BcrA_bacitracin_re 95.5 0.015 3.2E-07 52.0 3.9 25 55-79 25-49 (208)
452 PRK13540 cytochrome c biogenes 95.5 0.01 2.2E-07 52.9 2.8 25 55-79 26-50 (200)
453 TIGR02315 ABC_phnC phosphonate 95.5 0.0098 2.1E-07 54.5 2.8 25 55-79 27-51 (243)
454 COG3839 MalK ABC-type sugar tr 95.5 0.012 2.7E-07 56.7 3.5 36 57-104 30-65 (338)
455 PRK13652 cbiO cobalt transport 95.5 0.015 3.3E-07 54.6 4.1 25 55-79 29-53 (277)
456 PF13238 AAA_18: AAA domain; P 95.5 0.011 2.5E-07 47.8 2.9 19 59-77 1-19 (129)
457 cd03258 ABC_MetN_methionine_tr 95.5 0.01 2.2E-07 54.1 2.8 25 55-79 30-54 (233)
458 COG1124 DppF ABC-type dipeptid 95.5 0.024 5.2E-07 51.8 5.1 27 55-81 32-58 (252)
459 PRK15056 manganese/iron transp 95.5 0.015 3.3E-07 54.4 4.1 25 55-79 32-56 (272)
460 PRK14242 phosphate transporter 95.5 0.01 2.2E-07 54.8 2.9 25 55-79 31-55 (253)
461 cd02023 UMPK Uridine monophosp 95.5 0.01 2.2E-07 52.7 2.7 20 59-78 2-21 (198)
462 PRK03839 putative kinase; Prov 95.5 0.011 2.4E-07 51.7 2.9 21 57-77 1-21 (180)
463 PF03205 MobB: Molybdopterin g 95.5 0.013 2.7E-07 49.5 3.1 22 57-78 1-22 (140)
464 COG4559 ABC-type hemin transpo 95.5 0.0095 2.1E-07 53.5 2.4 23 57-79 28-50 (259)
465 PRK13543 cytochrome c biogenes 95.4 0.011 2.3E-07 53.4 2.8 25 55-79 36-60 (214)
466 cd03238 ABC_UvrA The excision 95.4 0.013 2.8E-07 51.5 3.2 24 54-77 19-42 (176)
467 PRK14723 flhF flagellar biosyn 95.4 0.024 5.2E-07 60.2 5.8 24 56-79 185-208 (767)
468 cd03266 ABC_NatA_sodium_export 95.4 0.011 2.3E-07 53.3 2.8 25 55-79 30-54 (218)
469 COG0488 Uup ATPase components 95.4 0.01 2.2E-07 60.8 2.9 27 55-81 28-54 (530)
470 PRK11701 phnK phosphonate C-P 95.4 0.014 3.1E-07 54.1 3.7 25 55-79 31-55 (258)
471 COG4988 CydD ABC-type transpor 95.4 0.015 3.3E-07 59.1 4.0 24 56-79 347-370 (559)
472 cd03235 ABC_Metallic_Cations A 95.4 0.01 2.3E-07 53.2 2.6 25 55-79 24-48 (213)
473 PRK11264 putative amino-acid A 95.4 0.011 2.4E-07 54.4 2.9 25 55-79 28-52 (250)
474 cd03216 ABC_Carb_Monos_I This 95.4 0.013 2.8E-07 50.5 3.1 25 55-79 25-49 (163)
475 PRK13648 cbiO cobalt transport 95.4 0.017 3.7E-07 53.9 4.2 25 55-79 34-58 (269)
476 cd03301 ABC_MalK_N The N-termi 95.4 0.012 2.5E-07 52.9 2.9 25 55-79 25-49 (213)
477 PRK10908 cell division protein 95.4 0.011 2.5E-07 53.4 2.8 25 55-79 27-51 (222)
478 TIGR01188 drrA daunorubicin re 95.4 0.017 3.7E-07 55.0 4.1 25 55-79 18-42 (302)
479 COG1341 Predicted GTPase or GT 95.4 0.026 5.6E-07 55.2 5.3 26 54-79 71-96 (398)
480 PRK11124 artP arginine transpo 95.4 0.012 2.5E-07 54.1 2.8 25 55-79 27-51 (242)
481 PRK10584 putative ABC transpor 95.4 0.011 2.4E-07 53.7 2.6 25 55-79 35-59 (228)
482 TIGR01978 sufC FeS assembly AT 95.4 0.011 2.5E-07 54.0 2.8 25 55-79 25-49 (243)
483 PRK11248 tauB taurine transpor 95.3 0.012 2.5E-07 54.7 2.8 25 55-79 26-50 (255)
484 cd03256 ABC_PhnC_transporter A 95.3 0.012 2.5E-07 53.9 2.8 25 55-79 26-50 (241)
485 cd03296 ABC_CysA_sulfate_impor 95.3 0.012 2.6E-07 54.0 2.8 25 55-79 27-51 (239)
486 PRK14262 phosphate ABC transpo 95.3 0.012 2.6E-07 54.3 2.8 25 55-79 28-52 (250)
487 PRK13637 cbiO cobalt transport 95.3 0.017 3.7E-07 54.6 4.0 25 55-79 32-56 (287)
488 PRK13641 cbiO cobalt transport 95.3 0.017 3.7E-07 54.5 4.0 25 55-79 32-56 (287)
489 cd03254 ABCC_Glucan_exporter_l 95.3 0.012 2.6E-07 53.4 2.8 25 55-79 28-52 (229)
490 PRK15177 Vi polysaccharide exp 95.3 0.014 3E-07 52.7 3.2 25 55-79 12-36 (213)
491 PRK13539 cytochrome c biogenes 95.3 0.012 2.7E-07 52.7 2.8 25 55-79 27-51 (207)
492 cd03219 ABC_Mj1267_LivG_branch 95.3 0.011 2.5E-07 53.8 2.7 25 55-79 25-49 (236)
493 PRK14269 phosphate ABC transpo 95.3 0.012 2.6E-07 54.2 2.9 25 55-79 27-51 (246)
494 TIGR02322 phosphon_PhnN phosph 95.3 0.012 2.6E-07 51.3 2.7 21 58-78 3-23 (179)
495 PRK14247 phosphate ABC transpo 95.3 0.012 2.6E-07 54.2 2.8 25 55-79 28-52 (250)
496 TIGR03864 PQQ_ABC_ATP ABC tran 95.3 0.012 2.6E-07 53.7 2.8 25 55-79 26-50 (236)
497 PRK06217 hypothetical protein; 95.3 0.014 2.9E-07 51.4 3.0 21 57-77 2-22 (183)
498 cd03236 ABC_RNaseL_inhibitor_d 95.3 0.012 2.7E-07 54.7 2.8 25 55-79 25-49 (255)
499 PRK11300 livG leucine/isoleuci 95.3 0.018 3.8E-07 53.3 3.9 25 55-79 30-54 (255)
500 PRK13638 cbiO cobalt transport 95.3 0.017 3.7E-07 54.0 3.9 25 55-79 26-50 (271)
No 1
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=8.9e-67 Score=491.90 Aligned_cols=302 Identities=55% Similarity=0.868 Sum_probs=279.8
Q ss_pred CCcEEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCCCccchhccccc-cccccCceEEEEecCCCcC
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK-SQKAVPASVEFVDIAGLVK 133 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~-~~~~~~~~i~lvDtpG~~~ 133 (359)
|.+++||||+||||||||||||| ...+.+++|||||++|+.|++.+++.|++.|+++++ |+++.+..+.|+|++|+++
T Consensus 1 m~l~~GIVGlPNVGKSTlFnAlT-~~~a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~ 79 (372)
T COG0012 1 MSLKIGIVGLPNVGKSTLFNALT-KAGAEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVK 79 (372)
T ss_pred CCceeEEecCCCCcHHHHHHHHH-cCCccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCC
Confidence 56899999999999999999999 656999999999999999999999999999999999 7999999999999999999
Q ss_pred CCCcCcchhhhHhhHHHhcccceEEeecCCCccEEEeCCcccCCcchHHHHhhhhhccHHHHHHHHHHHhhhccccccch
Q 018241 134 GASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSK 213 (359)
Q Consensus 134 ~~~~~~~~~~~~l~~i~~aD~il~Vvd~~~~~~v~~v~nk~d~~~~~~~i~~el~~~d~~~l~~~~~~~~~~~~~~~~Sa 213 (359)
++++|+||||+||++||++|+|+||||||++.++.|+.+++||++|++.++.||++||++.++++|+++.+.++..+.-.
T Consensus 80 GAs~GeGLGNkFL~~IRevdaI~hVVr~f~d~di~hv~~~vDP~~DIe~I~~EL~l~d~~~lek~~~r~~k~a~~~~~~~ 159 (372)
T COG0012 80 GASKGEGLGNKFLDNIREVDAIIHVVRCFGDTDIEHVEGKVDPVEDIEIINTELILWDLESLEKRWERLEKRAKAGKKLD 159 (372)
T ss_pred CcccCCCcchHHHHhhhhcCeEEEEEEecCCCcccCCCCCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999876322112
Q ss_pred hhHHHHHHHHHHHHHHhcCCCCCCC---CCCCHHHHHHHHHHhhhhcCCeEEEEeCCCcccCCCCCChhHHHHHHHHHhc
Q 018241 214 LKEDAEKAALEKIQQALMDGKPARS---VTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDL 290 (359)
Q Consensus 214 ~~~~~~~~ll~~i~~~L~~~~~~~~---~~~t~~~~e~i~~~~~l~~kp~~y~~nv~~~~~~~~~~~~~~~~i~~~~~~~ 290 (359)
+.......++..+.++|.++.+.+. ..|++++...++.+.++|.||++|++|+++.+..+. +++++++++++.++
T Consensus 160 k~~~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~e~~~~l~~l~llt~KP~lyvaN~~e~~~~~~--n~~~~~i~~~~~~~ 237 (372)
T COG0012 160 KELKEELSLLGKLEEHLEEGKPARGLDLSKWSEEDLEALASLNLLTAKPMLYVANVSEDDLANL--NEYVKRLKELAAKE 237 (372)
T ss_pred HHHHHHHHHHHhHHHHHHhhhhhhcCCcccCCHHHHHHHHHhhhhhcCCeEEEEECCcccccch--hHHHHHHHHHhhhc
Confidence 5566677899999999998887653 369999999999999999999999999999887654 67899999999888
Q ss_pred CCeEEEeeHHHHHHHcCCCH-HHHHHHHHHcCCCCchHHHHHHHHHHhcCCeEEecCCCCceecccccCC
Q 018241 291 QSGRVTISAQVEAELTELPS-EERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWTIRAG 359 (359)
Q Consensus 291 ~~~~i~~sa~le~~l~~l~~-~~~~~~l~~~~~~~~~l~~li~~~~~~L~li~ffT~g~~evraWt~~~g 359 (359)
+..+||+||++|.+|.+|++ +++.+|+..+|+..++|++++++.|.+|||++|||+|++|+|||||++|
T Consensus 238 ~~~vV~~sA~~E~eL~~l~~~~e~~~F~~~~g~~~~~l~~~i~~~y~~lgl~~~ft~g~~evrawti~~g 307 (372)
T COG0012 238 NAEVVPVSAAIELELRELADAEEKGEFLIELGQKESGLNELIRAGYGLLGLQTYFTAGVKEVRAWTIKDG 307 (372)
T ss_pred CCcEEEeeHHHHHHHHhCccccchhhHHHhcCcchhHHHHHHHHHhcccchhHHHhhcCCeEEEEEeccC
Confidence 88999999999999999987 8888899999999999999999999999999999999999999999987
No 2
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=100.00 E-value=9.1e-65 Score=485.66 Aligned_cols=299 Identities=58% Similarity=0.947 Sum_probs=277.5
Q ss_pred CCcEEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCCcCC
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~~~ 134 (359)
|.++|||||+||||||||||+||+. .+.++++||||++|+.|.+.+++.|.+.|+++++|.+.+++++.|+||||++++
T Consensus 1 m~~~vgIVG~PNvGKSTLfnaLt~~-~~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~ 79 (364)
T PRK09601 1 MGLKCGIVGLPNVGKSTLFNALTKA-GAEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKG 79 (364)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC-CCeecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCC
Confidence 3489999999999999999999954 489999999999999999999999999999999999999999999999999999
Q ss_pred CCcCcchhhhHhhHHHhcccceEEeecCCCccEEEeCCcccCCcchHHHHhhhhhccHHHHHHHHHHHhhhccccccchh
Q 018241 135 ASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKL 214 (359)
Q Consensus 135 ~~~~~~~~~~~l~~i~~aD~il~Vvd~~~~~~v~~v~nk~d~~~~~~~i~~el~~~d~~~l~~~~~~~~~~~~~~~~Sa~ 214 (359)
++.+++++++|++++++||+++||||+|.++.+.|+.+.+||++|++.+++||.++|++.++++++++.+..+... +
T Consensus 80 a~~g~glg~~fL~~i~~aD~li~VVd~f~d~~~~~~~~~~dP~~d~~~i~~EL~~~d~~~~ek~~~k~~k~~~~~~---~ 156 (364)
T PRK09601 80 ASKGEGLGNQFLANIREVDAIVHVVRCFEDDNITHVEGKVDPIRDIETINTELILADLETVEKRLERLEKKAKGGD---K 156 (364)
T ss_pred CChHHHHHHHHHHHHHhCCEEEEEEeCCccCCCCCCCCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhccc---h
Confidence 9888999999999999999999999999999999999999999999999999999999999999999987654211 2
Q ss_pred hHHHHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHhhhhcCCeEEEEeCCCcccCCCCCChhHHHHHHHHHhcCCeE
Q 018241 215 KEDAEKAALEKIQQALMDGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGR 294 (359)
Q Consensus 215 ~~~~~~~ll~~i~~~L~~~~~~~~~~~t~~~~e~i~~~~~l~~kp~~y~~nv~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 294 (359)
....+.++++++.++|+++.+++..+|++++.+.++.+.++|.||++|++|+++.++... +++.+++++|+++++..+
T Consensus 157 ~~~~e~~~l~~v~~~Le~~~~~~~~~~~~~e~~~l~~~~llt~KP~i~v~N~~e~~~~~~--~~~~~~i~~~~~~~~~~~ 234 (364)
T PRK09601 157 EAKAELELLEKLLEHLEEGKPARTLELTDEEEKLLKSLQLLTAKPVLYVANVDEDDLADG--NPYVKKVREIAAKEGAEV 234 (364)
T ss_pred hHHHHHHHHHHHHHHHHcCCCcccCCCCHHHHHHHHHhcccccCCeEEEEECCccccccc--cHHHHHHHHHHHHcCCeE
Confidence 235567899999999999888887789999999999999999999999999999877543 789999999998888899
Q ss_pred EEeeHHHHHHHcCCCHHHHHHHHHHcCCCCchHHHHHHHHHHhcCCeEEecCCCCceecccccCC
Q 018241 295 VTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWTIRAG 359 (359)
Q Consensus 295 i~~sa~le~~l~~l~~~~~~~~l~~~~~~~~~l~~li~~~~~~L~li~ffT~g~~evraWt~~~g 359 (359)
|++||++|.+|.+|+++++++||+++|+.+++++++|+++|++||||+|||||++|||||||++|
T Consensus 235 i~~sa~~E~el~~l~~ee~~~fl~~~g~~~s~~~~ii~~~~~~L~li~fftvg~~evrawti~~G 299 (364)
T PRK09601 235 VVICAKIEAEIAELDDEEKAEFLEELGLEESGLDRLIRAGYELLGLITYFTAGPKEVRAWTIKKG 299 (364)
T ss_pred EEEEHHHHHHHHcCCHHHHHHHHHHcCCcchhHHHHHHHHHHHhCCEEEecCCCCeEEEEEeCCC
Confidence 99999999999999988999999999999999999999999999999999999999999999998
No 3
>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=100.00 E-value=1.7e-64 Score=465.85 Aligned_cols=305 Identities=48% Similarity=0.748 Sum_probs=278.9
Q ss_pred cccCCcEEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCC
Q 018241 52 KISMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGL 131 (359)
Q Consensus 52 ~~~~~~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~ 131 (359)
+.++.+++||||+||||||||||+|| +..+.+++|||||+||+.+++.++|.|+|+++++|+|++.+++.++++|++|+
T Consensus 16 R~~~~lkiGIVGlPNvGKST~fnalT-~~~a~~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGL 94 (391)
T KOG1491|consen 16 RDGNNLKIGIVGLPNVGKSTFFNALT-KSKAGAANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGL 94 (391)
T ss_pred CCCCcceeeEeeCCCCchHHHHHHHh-cCCCCccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeeccc
Confidence 34477899999999999999999999 77777999999999999999999999999999999999999999999999999
Q ss_pred cCCCCcCcchhhhHhhHHHhcccceEEeecCCCccEEEeCCcccCCcchHHHHhhhhhccHHHHHHHHHHHhhhcccccc
Q 018241 132 VKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQ 211 (359)
Q Consensus 132 ~~~~~~~~~~~~~~l~~i~~aD~il~Vvd~~~~~~v~~v~nk~d~~~~~~~i~~el~~~d~~~l~~~~~~~~~~~~~~~~ 211 (359)
+++++.|+|+||.||+++|++|+|+||||||++.+++|+.+.+||++|++++++||.++|++.++++++++.+.....+.
T Consensus 95 vkGAs~G~GLGN~FLs~iR~vDaifhVVr~f~d~di~hve~~vDPvrDieii~~EL~lkd~e~l~k~~e~~~k~~~~~~~ 174 (391)
T KOG1491|consen 95 VKGASAGEGLGNKFLSHIRHVDAIFHVVRAFEDTDIIHVEGGVDPVRDIEIIQEELRLKDLEFLEKRLEKLEKKHKRTKS 174 (391)
T ss_pred ccCcccCcCchHHHHHhhhhccceeEEEEecCcccceeccCCCCchhhHHHHHHHHHHhHHHHHHHHHHHHhhhhhcccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999888763221
Q ss_pred c--hhhHHHHHHHHHHHHHHhcCCCC-CCC-CCCCHHHHHHHHHHhhhhcCCeEEEEeCCCcccCCCCCChhHHHHHHHH
Q 018241 212 S--KLKEDAEKAALEKIQQALMDGKP-ARS-VTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLA 287 (359)
Q Consensus 212 S--a~~~~~~~~ll~~i~~~L~~~~~-~~~-~~~t~~~~e~i~~~~~l~~kp~~y~~nv~~~~~~~~~~~~~~~~i~~~~ 287 (359)
+ -+..+....+++.+.+.|.+++. .++ ..|++++.+++.+.+++|.||++|++|+++.|+..+ ++.++.++++|.
T Consensus 175 ~~~~~q~k~e~~~l~~v~~~ll~~kk~~~~~~~W~d~eieiln~~~lLt~kP~Vyl~N~se~dy~r~-knk~l~~i~~w~ 253 (391)
T KOG1491|consen 175 NLETKQLKFEYGLLEKVKEKLLDGKKPVRPKEKWNDEEIEILNKLFLLTAKPTVYLLNLSEHDYARK-KNKKLPKIKEWV 253 (391)
T ss_pred cHHHHHHHHHHhHHHHHHHHHhccCCCCcchhhcCHHHHHHHHHhhhhhcCceEEEEecCcchhhhH-HHHHHhhhhhhh
Confidence 1 13344457799999998876554 344 479999999999999999999999999999988655 378999999999
Q ss_pred Hhc--CCeEEEeeHHHHHHHcCCCHHHHHHHHHHcCCCCchHHHHHHHHHHhcCCeEEecCCCCceecccccCC
Q 018241 288 SDL--QSGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWTIRAG 359 (359)
Q Consensus 288 ~~~--~~~~i~~sa~le~~l~~l~~~~~~~~l~~~~~~~~~l~~li~~~~~~L~li~ffT~g~~evraWt~~~g 359 (359)
+++ |..++|+|+.+|.++.+|.+||+.+++++++-. +.|+++|.+.|+.|+|+.|||+||+|||+|||++|
T Consensus 254 ~~~~~g~~~i~fs~~~e~ql~~~~~EE~~~~~~~~~~~-s~L~~iI~~~~~~L~li~fFt~G~~eV~~WtIr~g 326 (391)
T KOG1491|consen 254 DEVSPGDVVIVFSAAFESQLFELYEEEAVKELEDLGDS-SALPKIIKTGYSALNLIVFFTCGEDEVRAWTIRKG 326 (391)
T ss_pred hccCCCCeEEEehHHHHHHhhccCHHHHHHHHHhcccc-cchhHHHHHHHHhhCceEEEeeCCchheeeehhhc
Confidence 876 688999999999999999999999999999975 99999999999999999999999999999999987
No 4
>PTZ00258 GTP-binding protein; Provisional
Probab=100.00 E-value=4.5e-63 Score=479.08 Aligned_cols=303 Identities=46% Similarity=0.754 Sum_probs=278.3
Q ss_pred ccCCcEEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCCc
Q 018241 53 ISMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLV 132 (359)
Q Consensus 53 ~~~~~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~ 132 (359)
....++|||||+||||||||||+|| +..+.++++||||++|+.|.+.+++.|++.|+++++|++.+++++.|+||||++
T Consensus 18 ~~~~~kvgIVG~PNvGKSTLfnaLt-~~~~~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv 96 (390)
T PTZ00258 18 PGNNLKMGIVGLPNVGKSTTFNALC-KQQVPAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLV 96 (390)
T ss_pred CCCCcEEEEECCCCCChHHHHHHHh-cCcccccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcC
Confidence 3567899999999999999999999 666899999999999999999999999999999999999999999999999999
Q ss_pred CCCCcCcchhhhHhhHHHhcccceEEeecCCCccEEEeCCcccCCcchHHHHhhhhhccHHHHHHHHHHHhhhccccccc
Q 018241 133 KGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQS 212 (359)
Q Consensus 133 ~~~~~~~~~~~~~l~~i~~aD~il~Vvd~~~~~~v~~v~nk~d~~~~~~~i~~el~~~d~~~l~~~~~~~~~~~~~~~~S 212 (359)
++++.+++++++|++++++||+++||||+|++++++|+.+..||++|++.+++||.++|++.++++++++.+..+....
T Consensus 97 ~ga~~g~gLg~~fL~~Ir~aD~il~VVd~f~d~~v~h~~~~~dp~~d~~~i~~EL~~~d~~~~ek~~~~~~k~~~~~~~- 175 (390)
T PTZ00258 97 KGASEGEGLGNAFLSHIRAVDGIYHVVRAFEDEDITHVEGEIDPVRDLEIISSELILKDLEFVEKRLDELTKKRKKKKK- 175 (390)
T ss_pred cCCcchhHHHHHHHHHHHHCCEEEEEEeCCCCCCccccCCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhccccc-
Confidence 9998888999999999999999999999999999999999999999999999999999999999999998876321000
Q ss_pred hhhHHHHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHhhhhcCCeEEEEeCCCccc-CCCCCChhHHHHHHHHHhc-
Q 018241 213 KLKEDAEKAALEKIQQALMDGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDL-ADPGSNPHVNEVMNLASDL- 290 (359)
Q Consensus 213 a~~~~~~~~ll~~i~~~L~~~~~~~~~~~t~~~~e~i~~~~~l~~kp~~y~~nv~~~~~-~~~~~~~~~~~i~~~~~~~- 290 (359)
.+......++++++.++|+++.+++..+|++++.+.++.+.+++.||++|++|+++.|+ ..+ +.+.+++++++.++
T Consensus 176 ~~~~~~~~~~l~~v~~~L~~~~~~~~~~~~~~e~~~l~~l~llt~KP~iyv~N~~E~D~~~~~--~~~~~~l~~~~~~~~ 253 (390)
T PTZ00258 176 KKEEKVELDVLKKVLEWLEEGKPVRDGDWTDKEIEILNEYQLLTAKPMIYLVNMSEKDFIRQK--NKWLAKIKEWVGEKG 253 (390)
T ss_pred hhhHHHHHHHHHHHHHHHHcCCccccCCCCHHHHHHHHHhchhhcCCEEEEEECchhhhcccc--hHHHHHHHHHHHhcC
Confidence 12344567899999999999999998899999999999999999999999999998776 333 67889999988877
Q ss_pred CCeEEEeeHHHHHHHcCC-CHHHHHHHHHHcCCCCchHHHHHHHHHHhcCCeEEecCCCCceecccccCC
Q 018241 291 QSGRVTISAQVEAELTEL-PSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWTIRAG 359 (359)
Q Consensus 291 ~~~~i~~sa~le~~l~~l-~~~~~~~~l~~~~~~~~~l~~li~~~~~~L~li~ffT~g~~evraWt~~~g 359 (359)
+..++++||++|.+|++| +++++.+||+++|+.+++++++++++|++|+||+|||+||||+||||+++|
T Consensus 254 ~~~~v~~sa~~E~el~~l~~~~e~~~fl~~~g~~~~gl~~li~~~~~lL~li~ffT~g~~e~raw~i~~G 323 (390)
T PTZ00258 254 GGPIIPYSAEFEEELAELGSEEERKEYLEEYGIKQSMLDKIIKTGYKLLNLIHFFTAGPDEVRCWTIQKG 323 (390)
T ss_pred CCeEEEeeHHHHHHHHhcCCHHHHHHHHHHcCCCcccHHHHHHHHHHHhCCEEEEcCCCCceeEEEeCCC
Confidence 478999999999999999 999999999999999999999999999999999999999999999999998
No 5
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=100.00 E-value=2.7e-62 Score=468.59 Aligned_cols=298 Identities=49% Similarity=0.683 Sum_probs=272.2
Q ss_pred CCcEEEEEecCCCChhHHHHHHHhcccc-ccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCCcC
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVVENGKA-QAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVK 133 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~~~~~~-~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~~ 133 (359)
|.+++||||+||+|||||||+|| +..+ .+++|||||++|+.|++.++|.|+++|+.+++|.+..++++.++|+||+++
T Consensus 1 m~lk~GivGlPn~GKSTlfnaLT-~~~~~~~a~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~ 79 (368)
T TIGR00092 1 MGLSGGIVGLPNVGKSTLFAATT-NLLGNEAANPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVG 79 (368)
T ss_pred CCceEEEECCCCCChHHHHHHHh-CCCccccCCCCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEecccccc
Confidence 35899999999999999999999 5555 899999999999999999999999999999999999999999999999999
Q ss_pred CCCcCcchhhhHhhHHHhcccceEEeecCCCccEEEeCCcccCCcchHHHHhhhhhccHHHHHHHHHHHhhhccccccch
Q 018241 134 GASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSK 213 (359)
Q Consensus 134 ~~~~~~~~~~~~l~~i~~aD~il~Vvd~~~~~~v~~v~nk~d~~~~~~~i~~el~~~d~~~l~~~~~~~~~~~~~~~~Sa 213 (359)
+++++.|++++|++++|++|+++||||+|+++.+.|+.|..||++|++.+++||.++|++.++++++++.+..+. .
T Consensus 80 gAs~g~Glgn~fL~~ir~~d~l~hVvr~f~d~~i~H~~~~~dp~~d~~~i~~EL~l~d~~~~ek~l~r~~k~~k~-~--- 155 (368)
T TIGR00092 80 GASKGEGLGNQFLANIREVDIIQHVVRCFEDDIIHHVGNVDDPRDDFEIIDEELLKADEFLVEKRIGRSKKSAEG-G--- 155 (368)
T ss_pred chhcccCcchHHHHHHHhCCEEEEEEeCCCCcccCccCCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhc-c---
Confidence 999999999999999999999999999999999999999999999999999999999999999999998876541 1
Q ss_pred hhHHHHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHhhhhcCCeEEEEeCCCcccCCCCCChhHHHHHHHHHh---c
Q 018241 214 LKEDAEKAALEKIQQALMDGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASD---L 290 (359)
Q Consensus 214 ~~~~~~~~ll~~i~~~L~~~~~~~~~~~t~~~~e~i~~~~~l~~kp~~y~~nv~~~~~~~~~~~~~~~~i~~~~~~---~ 290 (359)
+....+..+++.+.++|+++++++...+++++..+++.++++|.||++|++|++++++.++ .+.+...++ |+.+ .
T Consensus 156 k~~~~e~~ll~~~~~~Le~~~~~r~~~~~~ee~~~~~~~~llt~Kp~~~v~N~~e~~~~~~-n~~~~~~~~-~~~~~~~~ 233 (368)
T TIGR00092 156 KDKKEELLLLEIILPLLNGGQMARHVDLSKEELILIKSLNLLTKKPIILIANVSEDYLRNL-NNNYLLIVE-WIAAYSKG 233 (368)
T ss_pred hhhHHHHHHHHHHHHHHhCCCeeccCCCCHHHHHHHHhCcchhhCCEEEEEECCHHHhhhc-ccHHHHHHH-HHhhcCcC
Confidence 2344577899999999999999987778888999999999999999999999998776422 144555565 8777 4
Q ss_pred CCeEEEeeHHHHHHHcCCCHHHHHHHHHHcCCCCc-hHHHHHHHHHHhcCCeEEecCCCCceecccccCC
Q 018241 291 QSGRVTISAQVEAELTELPSEERVEYLASLGVSES-GLGNLIRSTYSLLGLRTYFTSGEKETKAWTIRAG 359 (359)
Q Consensus 291 ~~~~i~~sa~le~~l~~l~~~~~~~~l~~~~~~~~-~l~~li~~~~~~L~li~ffT~g~~evraWt~~~g 359 (359)
+..++++||++|.++++|+++++.+||+++|+.+| +++++++.+|++|+|++|||+|++|||||||++|
T Consensus 234 ~~~~~~~~a~~E~el~~l~~ee~~~fl~~~g~~~s~~~~~ii~~~y~lL~L~sFfT~g~~EvRaWti~~G 303 (368)
T TIGR00092 234 DPKVVFVCALEESELSELDDEERQEFLQKLGLTESAGLNIIIRARYKLLLLSFFFTGGKEEVRAWTRKGG 303 (368)
T ss_pred CCeEEEeEHHHHHHHhcCCHHHHHHHHHHcCCcccchHHHHHHHHHHHhCeeEEEcCCCceeEEeecCCC
Confidence 67799999999999999999999999999999999 9999999999999999999999999999999998
No 6
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=100.00 E-value=5.3e-55 Score=406.42 Aligned_cols=274 Identities=58% Similarity=0.915 Sum_probs=252.0
Q ss_pred EEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCCcCCCCcC
Q 018241 59 AGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGASQG 138 (359)
Q Consensus 59 i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~~~~~~~ 138 (359)
|||||+||||||||||+|| +....++++||||++|+.|.+.+++.|+++++++++|.+.+++++.|+||||++++++.+
T Consensus 1 igivG~PN~GKSTLfn~Lt-~~~~~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~~ 79 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALT-KAGAEAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASKG 79 (274)
T ss_pred CeEeCCCCCcHHHHHHHHh-CCCCccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCchh
Confidence 6899999999999999999 455599999999999999999999999999999999999999999999999999999989
Q ss_pred cchhhhHhhHHHhcccceEEeecCCCccEEEeCCcccCCcchHHHHhhhhhccHHHHHHHHHHHhhhccccccchhhHHH
Q 018241 139 EGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDA 218 (359)
Q Consensus 139 ~~~~~~~l~~i~~aD~il~Vvd~~~~~~v~~v~nk~d~~~~~~~i~~el~~~d~~~l~~~~~~~~~~~~~~~~Sa~~~~~ 218 (359)
++++++|++++++||+++||||+|+++++.|+.+.+||++|++.++.||.++|++.++++++++.+..++ +. +....
T Consensus 80 ~glg~~fL~~i~~~D~li~VV~~f~d~~~~~~~~~~dp~~d~~~i~~El~~~d~~~~ek~~~~l~k~~~~-~~--~~~~~ 156 (274)
T cd01900 80 EGLGNKFLSHIREVDAIAHVVRCFEDDDITHVEGSVDPVRDIEIINTELILADLETVEKRLERLEKKAKS-GD--KEAKA 156 (274)
T ss_pred hHHHHHHHHHHHhCCEEEEEEeCcCCCCccCCCCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhc-cc--HHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999998876542 11 33456
Q ss_pred HHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHhhhhcCCeEEEEeCCCcccCCCCCChhHHHHHHHHHhcCCeEEEee
Q 018241 219 EKAALEKIQQALMDGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRVTIS 298 (359)
Q Consensus 219 ~~~ll~~i~~~L~~~~~~~~~~~t~~~~e~i~~~~~l~~kp~~y~~nv~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~s 298 (359)
+.++++++.++|+++.+++..+|++++.+.|+.+.++|.||++|++|+++.++... +...+++..++...+..+|++|
T Consensus 157 e~~~l~~~~~~L~~~~~~~~~~~~~~e~~~l~~~~llt~KP~i~v~N~~e~d~~~~--~~~~~~~~~~~~~~~~~~i~~s 234 (274)
T cd01900 157 ELELLEKIKEHLEEGKPARSLELTEEEIEILNSLQLLTAKPVLYVANVSEDDLANG--NNKVLKVREIAAKEGAEVIPIS 234 (274)
T ss_pred HHHHHHHHHHHHHcCCCcCcCCCCHHHHHHHHHHhHhhcCCceeecccCHHHhccc--cHHHHHHHHHHhcCCCeEEEee
Confidence 77899999999999989988789999999999999999999999999999877543 5566777777777788899999
Q ss_pred HHHHHHHcCCCHHHHHHHHHHcCCCCchHHHHHHHHHHhc
Q 018241 299 AQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLL 338 (359)
Q Consensus 299 a~le~~l~~l~~~~~~~~l~~~~~~~~~l~~li~~~~~~L 338 (359)
|++|.+|++|+++++++||+++|+.+++++++|+++|++|
T Consensus 235 a~~E~eL~~l~~ee~~~fl~~~gi~es~l~riI~~~y~~L 274 (274)
T cd01900 235 AKIEAELAELDEEEAAEFLEELGLEESGLDRLIRAGYELL 274 (274)
T ss_pred HHHHHHHHcCCHHHHHHHHHHcCCccccHHHHHHHHHhhC
Confidence 9999999999999999999999999999999999999986
No 7
>PRK09602 translation-associated GTPase; Reviewed
Probab=100.00 E-value=4.3e-46 Score=364.29 Aligned_cols=294 Identities=29% Similarity=0.428 Sum_probs=234.9
Q ss_pred CcEEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEe----CCCccchhccccc---cccccCceEEEEec
Q 018241 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAV----PDPRLHVLSGLSK---SQKAVPASVEFVDI 128 (359)
Q Consensus 56 ~~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~----~~~r~~~l~~~~~---~~~~~~~~i~lvDt 128 (359)
+++|||||+||||||||||+|| +..+.++++||||++|+.|.+.+ ++.|++.+++..+ +.+..+++++|+||
T Consensus 1 ~~kigivG~pnvGKSTlfn~Lt-~~~~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~ 79 (396)
T PRK09602 1 MITIGLVGKPNVGKSTFFNAAT-LADVEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDV 79 (396)
T ss_pred CcEEEEECCCCCCHHHHHHHHh-CCcccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEc
Confidence 3699999999999999999999 55678899999999999999886 5567777655443 44466788999999
Q ss_pred CCCcCCCCcCcchhhhHhhHHHhcccceEEeecCCCc---cEEEeCCcccCCcchHHHHhhhhhccHHHHHHHHHHHhhh
Q 018241 129 AGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDN---DIVHVNGKVDPKSDVDVINLELVFSDLDQIEKRMEKLKKG 205 (359)
Q Consensus 129 pG~~~~~~~~~~~~~~~l~~i~~aD~il~Vvd~~~~~---~v~~v~nk~d~~~~~~~i~~el~~~d~~~l~~~~~~~~~~ 205 (359)
||++++++++.+++++|++++++||+++||||+|++. ..++..+..||++|++.+++||.++|++.++++++++.+.
T Consensus 80 aGl~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~~~~~~~~~~~~~~~~dp~~d~~~i~~EL~~~d~~~~~k~~~~~~~~ 159 (396)
T PRK09602 80 AGLVPGAHEGRGLGNQFLDDLRQADALIHVVDASGSTDEEGNPVEPGSHDPVEDIKFLEEELDMWIYGILEKNWEKFSRK 159 (396)
T ss_pred CCcCCCccchhhHHHHHHHHHHHCCEEEEEEeCCCCcccCCcccCCCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 9999999989999999999999999999999999543 2333378899999999999999999999999999998776
Q ss_pred ccccccc-hhhHHHHHHHH----HHHHHHhcC-CCCCCCCCCCHHHHHHHHHHhhhhcCCeEEEEeCCCcccCCCCCChh
Q 018241 206 KAKDSQS-KLKEDAEKAAL----EKIQQALMD-GKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPH 279 (359)
Q Consensus 206 ~~~~~~S-a~~~~~~~~ll----~~i~~~L~~-~~~~~~~~~t~~~~e~i~~~~~l~~kp~~y~~nv~~~~~~~~~~~~~ 279 (359)
.+..+.. .........++ +.+.++|.+ +.+.+...|++++...++.+.+++.||++|++|+.+.. .. +..
T Consensus 160 ~~~~~~~~~~~~~~~l~~~~~~e~~v~~~L~~~g~~~~~~~~~~~~~~~I~~~~l~t~KPvI~VlNK~D~~--~~--~~~ 235 (396)
T PRK09602 160 AQAEKFDIEEALAEQLSGLGINEEHVKEALRELGLPEDPSKWTDEDLLELARELRKISKPMVIAANKADLP--PA--EEN 235 (396)
T ss_pred HhcCCcchHHHHHHHHhhhccCHHHHHHHHHHcCCcCcccCCCHHHHHHHHHhhhhcCCCEEEEEEchhcc--cc--hHH
Confidence 5421110 01111222233 778899974 56766668998888888888899999999999998732 22 334
Q ss_pred HHHHHHHHHhcCCeEEEeeHHHHHHHcC---------------------CCHHHH------HHHHHHcCCCCchHHHHH-
Q 018241 280 VNEVMNLASDLQSGRVTISAQVEAELTE---------------------LPSEER------VEYLASLGVSESGLGNLI- 331 (359)
Q Consensus 280 ~~~i~~~~~~~~~~~i~~sa~le~~l~~---------------------l~~~~~------~~~l~~~~~~~~~l~~li- 331 (359)
..++.++ .+..++++||..|.++.+ ++++++ .+||+.+|+ +++++++
T Consensus 236 l~~i~~~---~~~~vvpISA~~e~~l~~~l~~~i~~~lp~~p~~~~~d~ltd~~~r~~E~IRk~l~~~g~--~~~~~~i~ 310 (396)
T PRK09602 236 IERLKEE---KYYIVVPTSAEAELALRRAAKAGLIDYIPGDSDFEILGELSEKQKKALEYIREVLKKYGG--TGVQEAIN 310 (396)
T ss_pred HHHHHhc---CCCcEEEEcchhhhhHHHHHHHhHHhhCCCCCccCccccCCHHHHHHHHHHHHHHHHhCC--chHHHHHH
Confidence 5555554 345699999999998766 555432 489999998 8999999
Q ss_pred HHHHHhcCCeEEecCCC----------CceecccccCC
Q 018241 332 RSTYSLLGLRTYFTSGE----------KETKAWTIRAG 359 (359)
Q Consensus 332 ~~~~~~L~li~ffT~g~----------~evraWt~~~g 359 (359)
+++|++|+||+|||+++ +++|+|++++|
T Consensus 311 ~~~~~~L~li~~yt~~~~~~~~~~~g~~~~~~~~l~~g 348 (396)
T PRK09602 311 TAVFDLLDMIVVYPVEDENKLTDKKGNVLPDAFLLPKG 348 (396)
T ss_pred HHHHHHhCCEEEEecCcccccccccCcccceeEEECCC
Confidence 89999999999999976 77889999987
No 8
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=100.00 E-value=1.3e-35 Score=282.60 Aligned_cols=244 Identities=30% Similarity=0.420 Sum_probs=191.4
Q ss_pred EEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEe----CCCccchhcccc---ccccccCceEEEEecCCC
Q 018241 59 AGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAV----PDPRLHVLSGLS---KSQKAVPASVEFVDIAGL 131 (359)
Q Consensus 59 i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~----~~~r~~~l~~~~---~~~~~~~~~i~lvDtpG~ 131 (359)
|||||.||||||||||+|| +..+.++++||||++|+.|.+.+ ++.|++.+++.. ......+.++++|||||+
T Consensus 1 i~ivG~pnvGKStLfn~lt-~~~~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGl 79 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAAT-LADVEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGL 79 (318)
T ss_pred CEEECCCCCCHHHHHHHHh-CCCCcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCC
Confidence 6899999999999999999 56678999999999999999887 678888887542 111223456999999999
Q ss_pred cCCCCcCcchhhhHhhHHHhcccceEEeecCCCcc---EEEeCCcccCCcchHHHHhhhhhccHHHHHHHHHHHhhhccc
Q 018241 132 VKGASQGEGLGNKFLSHIREVDSILQVVRCFEDND---IVHVNGKVDPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAK 208 (359)
Q Consensus 132 ~~~~~~~~~~~~~~l~~i~~aD~il~Vvd~~~~~~---v~~v~nk~d~~~~~~~i~~el~~~d~~~l~~~~~~~~~~~~~ 208 (359)
+++++++.+++++|++++++||+++||+|++++.+ +.|+.+..||++|++.+.+||.+||++.++++++++.+....
T Consensus 80 v~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~~~~d~~~~~~~~~~~dp~~d~~~i~~El~~~d~~~~~~~~~~~~~~~~~ 159 (318)
T cd01899 80 VPGAHEGKGLGNKFLDDLRDADALIHVVDASGGTDAEGNGVETGGHDPLEDIEFLENEIDMWIYGILEKNWEKIVRKADA 159 (318)
T ss_pred CCCccchhhHHHHHHHHHHHCCEEEEEEeCCCCcccccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99998889999999999999999999999997544 488999999999999999999999999999999998876542
Q ss_pred cccc-hhhHHHHHHHH----HHHHHHhcCCC-CCCCCCCCHHHHHHHHHHhhhhcCCeEEEEeCCCcccCCCCCChhHHH
Q 018241 209 DSQS-KLKEDAEKAAL----EKIQQALMDGK-PARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNE 282 (359)
Q Consensus 209 ~~~S-a~~~~~~~~ll----~~i~~~L~~~~-~~~~~~~t~~~~e~i~~~~~l~~kp~~y~~nv~~~~~~~~~~~~~~~~ 282 (359)
.+.. .....+...++ +.+.+.|.++. +.+...|++.+.+.+..+++++.||++|++|+.+ ...+ +++.++
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~v~~~L~~~~~~~~~~~~~~~~~~~~~~~~llt~KPvI~VlNK~D--l~~~--~~~~~~ 235 (318)
T cd01899 160 EKTDIVEALSEQLSGFGVNEKDVIEALEELELPEDLSKWTDEDLLRLARALRKRSKPMVIAANKAD--IPDA--ENNISK 235 (318)
T ss_pred CCccHHHHHHHHHhhccccHHHHHHHHHhCCCCCcccCCCHHHHHHHHHHHHhcCCcEEEEEEHHH--ccCh--HHHHHH
Confidence 2111 11233334444 78888886654 4454578988898999888899999999999986 3322 334443
Q ss_pred HHHHHHhcCCeEEEeeHHHHHHHcCCC
Q 018241 283 VMNLASDLQSGRVTISAQVEAELTELP 309 (359)
Q Consensus 283 i~~~~~~~~~~~i~~sa~le~~l~~l~ 309 (359)
++. ......++++||..|.++.+|.
T Consensus 236 l~~--~~~~~~iI~iSA~~e~~L~~L~ 260 (318)
T cd01899 236 LRL--KYPDEIVVPTSAEAELALRRAA 260 (318)
T ss_pred HHh--hCCCCeEEEEeCcccccHHHHH
Confidence 332 1224579999999887776653
No 9
>COG1159 Era GTPase [General function prediction only]
Probab=99.97 E-value=2.2e-30 Score=238.05 Aligned_cols=191 Identities=28% Similarity=0.294 Sum_probs=157.9
Q ss_pred cEEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCCcCCCC
Q 018241 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGAS 136 (359)
Q Consensus 57 ~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~~~~~ 136 (359)
--|+|||+||||||||+|+|.|.+.+.+|+.|+||+....|.+..+ ..|++|+||||++++.+
T Consensus 7 GfVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~~I~GI~t~~-----------------~~QiIfvDTPGih~pk~ 69 (298)
T COG1159 7 GFVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIVTTD-----------------NAQIIFVDTPGIHKPKH 69 (298)
T ss_pred EEEEEEcCCCCcHHHHHHHHhcCceEeecCCcchhhhheeEEEEcC-----------------CceEEEEeCCCCCCcch
Confidence 4689999999999999999999999999999999999999999887 47999999999998865
Q ss_pred c-CcchhhhHhhHHHhcccceEEeecCC----------------CccEEEeCCcccCCcchHHHHhhhhhccHHHHHHHH
Q 018241 137 Q-GEGLGNKFLSHIREVDSILQVVRCFE----------------DNDIVHVNGKVDPKSDVDVINLELVFSDLDQIEKRM 199 (359)
Q Consensus 137 ~-~~~~~~~~l~~i~~aD~il~Vvd~~~----------------~~~v~~v~nk~d~~~~~~~i~~el~~~d~~~l~~~~ 199 (359)
. ++.|.+.+.+++.++|++++|||+.+ ..+++.+.||+|.+.+...+.. -.+.+....
T Consensus 70 ~l~~~m~~~a~~sl~dvDlilfvvd~~~~~~~~d~~il~~lk~~~~pvil~iNKID~~~~~~~l~~-----~~~~~~~~~ 144 (298)
T COG1159 70 ALGELMNKAARSALKDVDLILFVVDADEGWGPGDEFILEQLKKTKTPVILVVNKIDKVKPKTVLLK-----LIAFLKKLL 144 (298)
T ss_pred HHHHHHHHHHHHHhccCcEEEEEEeccccCCccHHHHHHHHhhcCCCeEEEEEccccCCcHHHHHH-----HHHHHHhhC
Confidence 5 66777888999999999999999988 2378899999998876543211 111111111
Q ss_pred HHHhhhccccccchhhHHHHHHHHHHHHHHhcCCCCCCCC-CCCHH-----HHHHHH-HHhhhhcCCeEEEEeCCCcccC
Q 018241 200 EKLKKGKAKDSQSKLKEDAEKAALEKIQQALMDGKPARSV-TLNDF-----ERDSIK-QLCLLTMKPIIYVANVAESDLA 272 (359)
Q Consensus 200 ~~~~~~~~~~~~Sa~~~~~~~~ll~~i~~~L~~~~~~~~~-~~t~~-----~~e~i~-~~~~l~~kp~~y~~nv~~~~~~ 272 (359)
++. ...++||+.+.++..|++.+.++|++++++||. .+||. ..|++| ++++.+..++||++.|..+++.
T Consensus 145 ~f~----~ivpiSA~~g~n~~~L~~~i~~~Lpeg~~~yp~d~itD~~~rf~~aEiiREk~~~~l~eElPhsv~VeIe~~~ 220 (298)
T COG1159 145 PFK----EIVPISALKGDNVDTLLEIIKEYLPEGPWYYPEDQITDRPERFLAAEIIREKLLLLLREELPHSVAVEIEEFE 220 (298)
T ss_pred Ccc----eEEEeeccccCCHHHHHHHHHHhCCCCCCcCChhhccCChHHHHHHHHHHHHHHHhcccccCceEEEEEEEEE
Confidence 111 116899999999999999999999999999996 46654 789999 9999999999999999887775
Q ss_pred C
Q 018241 273 D 273 (359)
Q Consensus 273 ~ 273 (359)
+
T Consensus 221 ~ 221 (298)
T COG1159 221 E 221 (298)
T ss_pred e
Confidence 3
No 10
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=99.96 E-value=2.5e-29 Score=232.06 Aligned_cols=232 Identities=28% Similarity=0.408 Sum_probs=168.8
Q ss_pred CCcEEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCCcCC
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~~~ 134 (359)
...+|++||+||+|||||+|+|| +....+++|||||..+.+|++.+. +++|+++|+||++++
T Consensus 62 Gda~v~lVGfPsvGKStLL~~LT-nt~seva~y~FTTl~~VPG~l~Y~-----------------ga~IQild~Pgii~g 123 (365)
T COG1163 62 GDATVALVGFPSVGKSTLLNKLT-NTKSEVADYPFTTLEPVPGMLEYK-----------------GAQIQLLDLPGIIEG 123 (365)
T ss_pred CCeEEEEEcCCCccHHHHHHHHh-CCCccccccCceecccccceEeec-----------------CceEEEEcCcccccC
Confidence 45799999999999999999999 888999999999999999999998 489999999999999
Q ss_pred CCcCcchhhhHhhHHHhcccceEEeecCCCccEEEeCCcccCCcchHHHHhhhhhccHHHHHHHHHHHhhhcc-ccccch
Q 018241 135 ASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPKSDVDVINLELVFSDLDQIEKRMEKLKKGKA-KDSQSK 213 (359)
Q Consensus 135 ~~~~~~~~~~~l~~i~~aD~il~Vvd~~~~~~v~~v~nk~d~~~~~~~i~~el~~~d~~~l~~~~~~~~~~~~-~~~~Sa 213 (359)
++.+.|.++++++.+|+||+|++|+|++.+ ....+.+..||.-..+. +.+....+....+ .+|+..
T Consensus 124 as~g~grG~~vlsv~R~ADlIiiVld~~~~------------~~~~~~i~~ELe~~GIr-lnk~~p~V~I~kk~~gGI~i 190 (365)
T COG1163 124 ASSGRGRGRQVLSVARNADLIIIVLDVFED------------PHHRDIIERELEDVGIR-LNKRPPDVTIKKKESGGIRI 190 (365)
T ss_pred cccCCCCcceeeeeeccCCEEEEEEecCCC------------hhHHHHHHHHHHhcCeE-ecCCCCceEEEEeccCCEEE
Confidence 999999999999999999999999998543 22366777777655543 2232333322222 144433
Q ss_pred hhHHHHH-HHHHHHHHHhcCCCCCCCC-----CCCHHHHHHHH-HHhhhhcCCeEEEEeCCCcccCCCCCChhHHHHHHH
Q 018241 214 LKEDAEK-AALEKIQQALMDGKPARSV-----TLNDFERDSIK-QLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNL 286 (359)
Q Consensus 214 ~~~~~~~-~ll~~i~~~L~~~~~~~~~-----~~t~~~~e~i~-~~~~l~~kp~~y~~nv~~~~~~~~~~~~~~~~i~~~ 286 (359)
....++. --.+.++..|.+.+..++. +.|.++ ++. -...+.++|.+|++|+.+. +. .+.+...
T Consensus 191 ~~t~~l~~~d~~~ir~iL~Ey~I~nA~V~Ir~dvTlDd--~id~l~~nrvY~p~l~v~NKiD~--~~------~e~~~~l 260 (365)
T COG1163 191 NGTGPLTHLDEDTVRAILREYRIHNADVLIREDVTLDD--LIDALEGNRVYKPALYVVNKIDL--PG------LEELERL 260 (365)
T ss_pred ecccccccCCHHHHHHHHHHhCcccceEEEecCCcHHH--HHHHHhhcceeeeeEEEEecccc--cC------HHHHHHH
Confidence 3322222 2357778888887766652 456432 222 2345789999999999763 21 2333333
Q ss_pred HHhcCCeEEEeeHHHHHHHcCCCHHHHHHHHHHcCCCCchHHHHHHHHHHhcCCeEEecCCCCce
Q 018241 287 ASDLQSGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKET 351 (359)
Q Consensus 287 ~~~~~~~~i~~sa~le~~l~~l~~~~~~~~l~~~~~~~~~l~~li~~~~~~L~li~ffT~g~~ev 351 (359)
.+. ..++++||+.. -+++++.+..|+.|+||++||..+.+.
T Consensus 261 ~~~--~~~v~isa~~~----------------------~nld~L~e~i~~~L~liRVYtK~~g~~ 301 (365)
T COG1163 261 ARK--PNSVPISAKKG----------------------INLDELKERIWDVLGLIRVYTKPPGEE 301 (365)
T ss_pred Hhc--cceEEEecccC----------------------CCHHHHHHHHHHhhCeEEEEecCCCCC
Confidence 333 25789997643 346678899999999999999876543
No 11
>COG2262 HflX GTPases [General function prediction only]
Probab=99.95 E-value=1.1e-27 Score=228.29 Aligned_cols=193 Identities=25% Similarity=0.292 Sum_probs=153.8
Q ss_pred ccccccccchhhhccCCCccchhhhhhhcCccccCCCCcchh------------------------hhhhhhhccccCCc
Q 018241 2 VRTAACNYLIPALTLLPKPMESSLFTRNANLIGVLGITTTSS------------------------RRRFSSASKISMSL 57 (359)
Q Consensus 2 v~~a~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------~~~~~~~~~~~~~~ 57 (359)
||||+++|++||+...+..+++ .||++|.+|++.... ++..+..|....-+
T Consensus 119 VeLAqL~Y~lpRl~~~~~~l~~-----~GggiG~rGpGE~~lE~drR~ir~rI~~i~~eLe~v~~~R~~~R~~R~~~~~p 193 (411)
T COG2262 119 VELAQLRYELPRLVGSGSHLSR-----LGGGIGFRGPGETQLETDRRRIRRRIAKLKRELENVEKAREPRRKKRSRSGIP 193 (411)
T ss_pred hhHHhhhhhhhHhHhhhhhccc-----ccCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCC
Confidence 8999999999999999998886 789999999887222 12234455556679
Q ss_pred EEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCCcCCCCc
Q 018241 58 RAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGASQ 137 (359)
Q Consensus 58 ~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~~~~~~ 137 (359)
.|++|||+|||||||||+|| +....+.+..|+|.+|+...+.+++ +.++.+.||.||+...+.
T Consensus 194 ~vaLvGYTNAGKSTL~N~LT-~~~~~~~d~LFATLdpttR~~~l~~----------------g~~vlLtDTVGFI~~LP~ 256 (411)
T COG2262 194 LVALVGYTNAGKSTLFNALT-GADVYVADQLFATLDPTTRRIELGD----------------GRKVLLTDTVGFIRDLPH 256 (411)
T ss_pred eEEEEeeccccHHHHHHHHh-ccCeeccccccccccCceeEEEeCC----------------CceEEEecCccCcccCCh
Confidence 99999999999999999999 8888889999999999999999987 457999999999977663
Q ss_pred CcchhhhH---hhHHHhcccceEEeecCCC--------------------ccEEEeCCcccCCcchHHHHhhhhhccHHH
Q 018241 138 GEGLGNKF---LSHIREVDSILQVVRCFED--------------------NDIVHVNGKVDPKSDVDVINLELVFSDLDQ 194 (359)
Q Consensus 138 ~~~~~~~~---l~~i~~aD~il~Vvd~~~~--------------------~~v~~v~nk~d~~~~~~~i~~el~~~d~~~ 194 (359)
.+...| |....+||+++||||++++ .|++.+.||+|.+.+...+. .
T Consensus 257 --~LV~AFksTLEE~~~aDlllhVVDaSdp~~~~~~~~v~~vL~el~~~~~p~i~v~NKiD~~~~~~~~~---------~ 325 (411)
T COG2262 257 --PLVEAFKSTLEEVKEADLLLHVVDASDPEILEKLEAVEDVLAEIGADEIPIILVLNKIDLLEDEEILA---------E 325 (411)
T ss_pred --HHHHHHHHHHHHhhcCCEEEEEeecCChhHHHHHHHHHHHHHHcCCCCCCEEEEEecccccCchhhhh---------h
Confidence 355444 6777899999999999983 36899999999886654111 1
Q ss_pred HHHHHHHHhhhccccccchhhHHHHHHHHHHHHHHhcCC
Q 018241 195 IEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMDG 233 (359)
Q Consensus 195 l~~~~~~~~~~~~~~~~Sa~~~~~~~~ll~~i~~~L~~~ 233 (359)
+.. ... ....+||+++.+++.|.+.|.+.+...
T Consensus 326 ~~~----~~~--~~v~iSA~~~~gl~~L~~~i~~~l~~~ 358 (411)
T COG2262 326 LER----GSP--NPVFISAKTGEGLDLLRERIIELLSGL 358 (411)
T ss_pred hhh----cCC--CeEEEEeccCcCHHHHHHHHHHHhhhc
Confidence 111 110 125789999999999999999999744
No 12
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.93 E-value=3.5e-25 Score=207.54 Aligned_cols=189 Identities=23% Similarity=0.162 Sum_probs=144.3
Q ss_pred EEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCCcCCCCc
Q 018241 58 RAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGASQ 137 (359)
Q Consensus 58 ~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~~~~~~ 137 (359)
+|+++|+||||||||+|+|+|...+.++++|+||++...|....+ +.++.|+||||+.+....
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~i~~i~~~~-----------------~~qii~vDTPG~~~~~~~ 64 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNRISGIHTTG-----------------ASQIIFIDTPGFHEKKHS 64 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccCcEEEEEEcC-----------------CcEEEEEECcCCCCCcch
Confidence 689999999999999999998888889999999999888876554 357999999999765332
Q ss_pred -CcchhhhHhhHHHhcccceEEeecCCC---------------ccEEEeCCcccCCcchHHHHhhhhhccHHHHHHHHHH
Q 018241 138 -GEGLGNKFLSHIREVDSILQVVRCFED---------------NDIVHVNGKVDPKSDVDVINLELVFSDLDQIEKRMEK 201 (359)
Q Consensus 138 -~~~~~~~~l~~i~~aD~il~Vvd~~~~---------------~~v~~v~nk~d~~~~~~~i~~el~~~d~~~l~~~~~~ 201 (359)
...+...+...++++|++++|+|+++. .+++.+.||+|..... .+... +.. +..
T Consensus 65 l~~~~~~~~~~~l~~aDvvl~VvD~~~~~~~~~~i~~~l~~~~~p~ilV~NK~Dl~~~~-~~~~~--------~~~-~~~ 134 (270)
T TIGR00436 65 LNRLMMKEARSAIGGVDLILFVVDSDQWNGDGEFVLTKLQNLKRPVVLTRNKLDNKFKD-KLLPL--------IDK-YAI 134 (270)
T ss_pred HHHHHHHHHHHHHhhCCEEEEEEECCCCCchHHHHHHHHHhcCCCEEEEEECeeCCCHH-HHHHH--------HHH-HHh
Confidence 223344567788999999999999762 3578899999976322 21110 111 111
Q ss_pred HhhhccccccchhhHHHHHHHHHHHHHHhcCCCCCCCC-CCCHH-----HHHHHH-HHhhhhcCCeEEEEeCCCcccCC
Q 018241 202 LKKGKAKDSQSKLKEDAEKAALEKIQQALMDGKPARSV-TLNDF-----ERDSIK-QLCLLTMKPIIYVANVAESDLAD 273 (359)
Q Consensus 202 ~~~~~~~~~~Sa~~~~~~~~ll~~i~~~L~~~~~~~~~-~~t~~-----~~e~i~-~~~~l~~kp~~y~~nv~~~~~~~ 273 (359)
........++||+.+.+++++++.+.+.+++++++++. .+|+. ..|++| +++..+.+++||.+.+..+.+.+
T Consensus 135 ~~~~~~v~~iSA~~g~gi~~L~~~l~~~l~~~~~~~~~~~~t~~~~~~~~~e~ire~~~~~~~~e~p~~~~~~~~~~~~ 213 (270)
T TIGR00436 135 LEDFKDIVPISALTGDNTSFLAAFIEVHLPEGPFRYPEDYVTDQPDRFKISEIIREKIIRYTKEEIPHSVRVEIERKSF 213 (270)
T ss_pred hcCCCceEEEecCCCCCHHHHHHHHHHhCCCCCCCCCCcccCCCCHHHHHHHHHHHHHHHhcccccCceEEEEEEEEEE
Confidence 11111125789999999999999999999999998886 34543 688999 99999999999999988877753
No 13
>PRK11058 GTPase HflX; Provisional
Probab=99.91 E-value=2.6e-24 Score=212.85 Aligned_cols=193 Identities=22% Similarity=0.265 Sum_probs=137.5
Q ss_pred ccccccccchhhhccCCCccchhhhhhhcCccccCCCCcchhh---------------------hhhhhhc--cc-cCCc
Q 018241 2 VRTAACNYLIPALTLLPKPMESSLFTRNANLIGVLGITTTSSR---------------------RRFSSAS--KI-SMSL 57 (359)
Q Consensus 2 v~~a~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~--~~-~~~~ 57 (359)
||||+|+|++|||...+....+ +||++|.+|++..... ......+ +. ...+
T Consensus 124 velA~l~y~~prl~~~~~~l~~-----~~gg~g~~g~ge~~~e~d~r~i~~ri~~l~~~L~~~~~~r~~~r~~r~~~~~p 198 (426)
T PRK11058 124 VELAQLRHLATRLVRGWTHLER-----QKGGIGLRGPGETQLETDRRLLRNRIVQILSRLERVEKQREQGRRARIKADVP 198 (426)
T ss_pred HHHHhhhhhhhhhhccccchhh-----hcCCCCCCCCChhHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhcCCC
Confidence 7999999999999988877666 7889999998773221 1111111 11 2337
Q ss_pred EEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCCcCCCCc
Q 018241 58 RAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGASQ 137 (359)
Q Consensus 58 ~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~~~~~~ 137 (359)
+|+|||+||||||||||+|++... .+++.||+|+++..+.+.+++ ...+.++||||+.+..+.
T Consensus 199 ~ValVG~~NaGKSSLlN~Lt~~~~-~v~~~~~tTld~~~~~i~l~~----------------~~~~~l~DTaG~~r~lp~ 261 (426)
T PRK11058 199 TVSLVGYTNAGKSTLFNRITEARV-YAADQLFATLDPTLRRIDVAD----------------VGETVLADTVGFIRHLPH 261 (426)
T ss_pred EEEEECCCCCCHHHHHHHHhCCce-eeccCCCCCcCCceEEEEeCC----------------CCeEEEEecCcccccCCH
Confidence 999999999999999999995554 488999999999998887764 236899999999654221
Q ss_pred Ccchh---hhHhhHHHhcccceEEeecCCC--------------------ccEEEeCCcccCCcchHHHHhhhhhccHHH
Q 018241 138 GEGLG---NKFLSHIREVDSILQVVRCFED--------------------NDIVHVNGKVDPKSDVDVINLELVFSDLDQ 194 (359)
Q Consensus 138 ~~~~~---~~~l~~i~~aD~il~Vvd~~~~--------------------~~v~~v~nk~d~~~~~~~i~~el~~~d~~~ 194 (359)
.+. ...+..+++||++++|+|+++. .+++.+.||+|....... .
T Consensus 262 --~lve~f~~tl~~~~~ADlIL~VvDaS~~~~~e~l~~v~~iL~el~~~~~pvIiV~NKiDL~~~~~~-----------~ 328 (426)
T PRK11058 262 --DLVAAFKATLQETRQATLLLHVVDAADVRVQENIEAVNTVLEEIDAHEIPTLLVMNKIDMLDDFEP-----------R 328 (426)
T ss_pred --HHHHHHHHHHHHhhcCCEEEEEEeCCCccHHHHHHHHHHHHHHhccCCCCEEEEEEcccCCCchhH-----------H
Confidence 122 2345667899999999999863 357889999997643211 0
Q ss_pred HHHHHHHHhhhccccccchhhHHHHHHHHHHHHHHhcC
Q 018241 195 IEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMD 232 (359)
Q Consensus 195 l~~~~~~~~~~~~~~~~Sa~~~~~~~~ll~~i~~~L~~ 232 (359)
+.. . . ........+||+++.++.++++.+.+.+..
T Consensus 329 ~~~-~-~-~~~~~~v~ISAktG~GIdeL~e~I~~~l~~ 363 (426)
T PRK11058 329 IDR-D-E-ENKPIRVWLSAQTGAGIPLLFQALTERLSG 363 (426)
T ss_pred HHH-H-h-cCCCceEEEeCCCCCCHHHHHHHHHHHhhh
Confidence 000 0 0 000001357999999999999999998853
No 14
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.91 E-value=1e-23 Score=206.35 Aligned_cols=168 Identities=27% Similarity=0.369 Sum_probs=128.5
Q ss_pred cEEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCCcCCCC
Q 018241 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGAS 136 (359)
Q Consensus 57 ~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~~~~~ 136 (359)
..|||||+||||||||+|+|+ +....++++||||+.|+.|.+.+++ ..+++|+||||+.++++
T Consensus 160 adValVG~PNaGKSTLln~Lt-~~k~~vs~~p~TT~~p~~Giv~~~~----------------~~~i~~vDtPGi~~~a~ 222 (390)
T PRK12298 160 ADVGLLGLPNAGKSTFIRAVS-AAKPKVADYPFTTLVPNLGVVRVDD----------------ERSFVVADIPGLIEGAS 222 (390)
T ss_pred ccEEEEcCCCCCHHHHHHHHh-CCcccccCCCCCccCcEEEEEEeCC----------------CcEEEEEeCCCcccccc
Confidence 379999999999999999999 5567999999999999999998874 23599999999999888
Q ss_pred cCcchhhhHhhHHHhcccceEEeecC---C----------------------CccEEEeCCcccCCcchHHHHhhhhhcc
Q 018241 137 QGEGLGNKFLSHIREVDSILQVVRCF---E----------------------DNDIVHVNGKVDPKSDVDVINLELVFSD 191 (359)
Q Consensus 137 ~~~~~~~~~l~~i~~aD~il~Vvd~~---~----------------------~~~v~~v~nk~d~~~~~~~i~~el~~~d 191 (359)
.+.+++..|+.++.++|++++|+|++ . ..+++++.||+|..... .+..
T Consensus 223 ~~~~Lg~~~l~~i~radvlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~~-el~~------ 295 (390)
T PRK12298 223 EGAGLGIRFLKHLERCRVLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLLDEE-EAEE------ 295 (390)
T ss_pred chhhHHHHHHHHHHhCCEEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccCChH-HHHH------
Confidence 88889999999999999999999987 1 13578889999976432 1111
Q ss_pred HHHHHHHHHHHhhhccccccchhhHHHHHHHHHHHHHHhcCCCCCCCC-CCCHH-----HHHHHH
Q 018241 192 LDQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMDGKPARSV-TLNDF-----ERDSIK 250 (359)
Q Consensus 192 ~~~l~~~~~~~~~~~~~~~~Sa~~~~~~~~ll~~i~~~L~~~~~~~~~-~~t~~-----~~e~i~ 250 (359)
.+...............+||+.+.++.++++.+.+.+++++++++. .+|+. ..|++|
T Consensus 296 --~l~~l~~~~~~~~~Vi~ISA~tg~GIdeLl~~I~~~L~~~~~~~~~~~~td~~~~~~~~EiiR 358 (390)
T PRK12298 296 --RAKAIVEALGWEGPVYLISAASGLGVKELCWDLMTFIEENPREEAEEAEAPEKVEFMWDDYHR 358 (390)
T ss_pred --HHHHHHHHhCCCCCEEEEECCCCcCHHHHHHHHHHHhhhCcccCCcccccCccHHHHHHHHHH
Confidence 1111111111000115789999999999999999999998888875 45543 345555
No 15
>PRK15494 era GTPase Era; Provisional
Probab=99.91 E-value=1.1e-23 Score=203.47 Aligned_cols=190 Identities=19% Similarity=0.220 Sum_probs=145.9
Q ss_pred CcEEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCCcCCC
Q 018241 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA 135 (359)
Q Consensus 56 ~~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~~~~ 135 (359)
..+|+++|.||||||||+|+|+|...+.+++.++||++...+.+..++ .++.||||||+.+..
T Consensus 52 ~~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr~~~~~~~~~~~-----------------~qi~~~DTpG~~~~~ 114 (339)
T PRK15494 52 TVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLKD-----------------TQVILYDTPGIFEPK 114 (339)
T ss_pred eeEEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCccCcEEEEEEeCC-----------------eEEEEEECCCcCCCc
Confidence 469999999999999999999988888889999999998888887763 679999999997543
Q ss_pred Cc-CcchhhhHhhHHHhcccceEEeecCCC----------------ccEEEeCCcccCCcchHHHHhhhhhccHHHHHHH
Q 018241 136 SQ-GEGLGNKFLSHIREVDSILQVVRCFED----------------NDIVHVNGKVDPKSDVDVINLELVFSDLDQIEKR 198 (359)
Q Consensus 136 ~~-~~~~~~~~l~~i~~aD~il~Vvd~~~~----------------~~v~~v~nk~d~~~~~~~i~~el~~~d~~~l~~~ 198 (359)
.. ...+.+.+...+++||++++|+|+.+. .+.+.+.||+|.... .+ ..+...
T Consensus 115 ~~l~~~~~r~~~~~l~~aDvil~VvD~~~s~~~~~~~il~~l~~~~~p~IlViNKiDl~~~--~~---------~~~~~~ 183 (339)
T PRK15494 115 GSLEKAMVRCAWSSLHSADLVLLIIDSLKSFDDITHNILDKLRSLNIVPIFLLNKIDIESK--YL---------NDIKAF 183 (339)
T ss_pred ccHHHHHHHHHHHHhhhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEEEEEEhhcCccc--cH---------HHHHHH
Confidence 32 333445556678999999999998652 245678899996532 11 111121
Q ss_pred HHHHhhhccccccchhhHHHHHHHHHHHHHHhcCCCCCCCC-CCCHH-----HHHHHH-HHhhhhcCCeEEEEeCCCccc
Q 018241 199 MEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMDGKPARSV-TLNDF-----ERDSIK-QLCLLTMKPIIYVANVAESDL 271 (359)
Q Consensus 199 ~~~~~~~~~~~~~Sa~~~~~~~~ll~~i~~~L~~~~~~~~~-~~t~~-----~~e~i~-~~~~l~~kp~~y~~nv~~~~~ 271 (359)
+..........++||+.+.|+.++++.+.+.+++++++||. .+|+. ..|+|| +++..+.+++||.+.|..+.+
T Consensus 184 l~~~~~~~~i~~iSAktg~gv~eL~~~L~~~l~~~~~~~~~~~~td~~~~~~~~eiiRe~~~~~~~~EiP~~~~v~i~~~ 263 (339)
T PRK15494 184 LTENHPDSLLFPISALSGKNIDGLLEYITSKAKISPWLYAEDDITDLPMRFIAAEITREQLFLNLQKELPYKLTVQTEKW 263 (339)
T ss_pred HHhcCCCcEEEEEeccCccCHHHHHHHHHHhCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhhCCcccCceEEEEEEEE
Confidence 21111111125789999999999999999999999999996 45654 689999 999999999999999988777
Q ss_pred CC
Q 018241 272 AD 273 (359)
Q Consensus 272 ~~ 273 (359)
.+
T Consensus 264 ~~ 265 (339)
T PRK15494 264 ED 265 (339)
T ss_pred EE
Confidence 53
No 16
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=99.90 E-value=4.1e-23 Score=192.46 Aligned_cols=139 Identities=37% Similarity=0.584 Sum_probs=108.1
Q ss_pred hcCccccCCCCc----chhhhhhhh------hccccCC----cEEEEEecCCCChhHHHHHHHhccccccCCCCceeccc
Q 018241 29 NANLIGVLGITT----TSSRRRFSS------ASKISMS----LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEP 94 (359)
Q Consensus 29 ~~~~~~~~~~~~----~~~~~~~~~------~~~~~~~----~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~ 94 (359)
+.|+.|++|... ..+.++... .|...-. ..||+||+||||||||+|+++ .+...+++|||||+.|
T Consensus 118 akGG~GG~GN~~Fks~~nrAP~~a~~G~~Ge~r~v~LELKllADVGLVG~PNaGKSTlls~vS-~AkPKIadYpFTTL~P 196 (369)
T COG0536 118 AKGGRGGLGNAHFKSSVNRAPRFATPGEPGEERDLRLELKLLADVGLVGLPNAGKSTLLSAVS-AAKPKIADYPFTTLVP 196 (369)
T ss_pred EcCCCCCccchhhcCcccCCcccCCCCCCCceEEEEEEEeeecccccccCCCCcHHHHHHHHh-hcCCcccCCccccccC
Confidence 567888888443 222233322 2222222 359999999999999999999 9999999999999999
Q ss_pred eeEEEEeCCCccchhccccccccccCceEEEEecCCCcCCCCcCcchhhhHhhHHHhcccceEEeecCCCccEEEeCCcc
Q 018241 95 NVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174 (359)
Q Consensus 95 ~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~~~~~~~~~~~~~~l~~i~~aD~il~Vvd~~~~~~v~~v~nk~ 174 (359)
+.|++.+.+ ...+++-|+||++++++.+.|++.+||.|+..|-+++||||++..+ ..
T Consensus 197 nLGvV~~~~----------------~~sfv~ADIPGLIEGAs~G~GLG~~FLrHIERt~vL~hviD~s~~~-------~~ 253 (369)
T COG0536 197 NLGVVRVDG----------------GESFVVADIPGLIEGASEGVGLGLRFLRHIERTRVLLHVIDLSPID-------GR 253 (369)
T ss_pred cccEEEecC----------------CCcEEEecCcccccccccCCCccHHHHHHHHhhheeEEEEecCccc-------CC
Confidence 999999854 3569999999999999999999999999999999999999997642 24
Q ss_pred cCCcchHHHHhhhhhcc
Q 018241 175 DPKSDVDVINLELVFSD 191 (359)
Q Consensus 175 d~~~~~~~i~~el~~~d 191 (359)
||.++++.++.||....
T Consensus 254 dp~~~~~~i~~EL~~Y~ 270 (369)
T COG0536 254 DPIEDYQTIRNELEKYS 270 (369)
T ss_pred CHHHHHHHHHHHHHHhh
Confidence 55666666666554433
No 17
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.89 E-value=6.6e-23 Score=198.44 Aligned_cols=190 Identities=26% Similarity=0.310 Sum_probs=132.7
Q ss_pred ccccccccchhhhccCCCccchhhhhhhcCccccCCCCcchh----h-----------------hh---hhhhccccCCc
Q 018241 2 VRTAACNYLIPALTLLPKPMESSLFTRNANLIGVLGITTTSS----R-----------------RR---FSSASKISMSL 57 (359)
Q Consensus 2 v~~a~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~-----------------~~---~~~~~~~~~~~ 57 (359)
|++|+++|.+|++...+..+. +.++++|..|++.... + .. .+..|.....+
T Consensus 116 v~la~l~~~l~r~~~~~~~l~-----~~~~~i~~~g~gE~~~~~~~~~i~~ri~~l~~~L~~~~~~~~~~r~~r~~~~~~ 190 (351)
T TIGR03156 116 VELAQLKYLLPRLVGGWTHLS-----RQGGGIGTRGPGETQLETDRRLIRERIAQLKKELEKVEKQRERQRRRRKRADVP 190 (351)
T ss_pred HHHHhccchhhhhhhhHHHHH-----hhcCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCc
Confidence 689999999999987554432 4778888886654210 0 11 11122223559
Q ss_pred EEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCCcCCCCc
Q 018241 58 RAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGASQ 137 (359)
Q Consensus 58 ~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~~~~~~ 137 (359)
+|+|+|+||||||||+|+|++.. +.+++.||+|+++..+.+.+++ +.++.||||||++...+.
T Consensus 191 ~ValvG~~NvGKSSLln~L~~~~-~~v~~~~~tT~d~~~~~i~~~~----------------~~~i~l~DT~G~~~~l~~ 253 (351)
T TIGR03156 191 TVALVGYTNAGKSTLFNALTGAD-VYAADQLFATLDPTTRRLDLPD----------------GGEVLLTDTVGFIRDLPH 253 (351)
T ss_pred EEEEECCCCCCHHHHHHHHhCCc-eeeccCCccccCCEEEEEEeCC----------------CceEEEEecCcccccCCH
Confidence 99999999999999999999554 7788999999999999988864 357999999999654221
Q ss_pred C-cchhhhHhhHHHhcccceEEeecCCC--------------------ccEEEeCCcccCCcchHHHHhhhhhccHHHHH
Q 018241 138 G-EGLGNKFLSHIREVDSILQVVRCFED--------------------NDIVHVNGKVDPKSDVDVINLELVFSDLDQIE 196 (359)
Q Consensus 138 ~-~~~~~~~l~~i~~aD~il~Vvd~~~~--------------------~~v~~v~nk~d~~~~~~~i~~el~~~d~~~l~ 196 (359)
. ......++..+++||+++||+|+++. .+++.+.||+|...+.. +. ...
T Consensus 254 ~lie~f~~tle~~~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l~~~~~piIlV~NK~Dl~~~~~-v~---------~~~ 323 (351)
T TIGR03156 254 ELVAAFRATLEEVREADLLLHVVDASDPDREEQIEAVEKVLEELGAEDIPQLLVYNKIDLLDEPR-IE---------RLE 323 (351)
T ss_pred HHHHHHHHHHHHHHhCCEEEEEEECCCCchHHHHHHHHHHHHHhccCCCCEEEEEEeecCCChHh-HH---------HHH
Confidence 1 01123456678999999999999762 35788999999764211 10 000
Q ss_pred HHHHHHhhhccccccchhhHHHHHHHHHHHHHH
Q 018241 197 KRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQA 229 (359)
Q Consensus 197 ~~~~~~~~~~~~~~~Sa~~~~~~~~ll~~i~~~ 229 (359)
. .......+||+++.++.++++.+.+.
T Consensus 324 ~------~~~~~i~iSAktg~GI~eL~~~I~~~ 350 (351)
T TIGR03156 324 E------GYPEAVFVSAKTGEGLDLLLEAIAER 350 (351)
T ss_pred h------CCCCEEEEEccCCCCHHHHHHHHHhh
Confidence 0 00111468999999999999888764
No 18
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.88 E-value=8.9e-23 Score=187.20 Aligned_cols=224 Identities=26% Similarity=0.370 Sum_probs=148.1
Q ss_pred EEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCCcCCCCc
Q 018241 58 RAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGASQ 137 (359)
Q Consensus 58 ~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~~~~~~ 137 (359)
+|+++|.||+|||||+|+|+ +....++++||+|.++..|.+.+.+ .++++|||||+.+....
T Consensus 2 ~v~lvG~~~~GKStLl~~Lt-g~~~~v~~~~~tT~~~~~g~~~~~~-----------------~~i~l~DtpG~~~~~~~ 63 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLT-NTKSEVAAYEFTTLTCVPGVLEYKG-----------------AKIQLLDLPGIIEGAAD 63 (233)
T ss_pred EEEEECCCCCCHHHHHHHHH-CCCccccCCCCccccceEEEEEECC-----------------eEEEEEECCCccccccc
Confidence 78999999999999999999 4556788999999999999988863 67999999999887765
Q ss_pred CcchhhhHhhHHHhcccceEEeecCCCccEEEeCCcccCCcchHHHHhhhhhccHHHHHHHHHHHhhhcc-ccccchhh-
Q 018241 138 GEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPKSDVDVINLELVFSDLDQIEKRMEKLKKGKA-KDSQSKLK- 215 (359)
Q Consensus 138 ~~~~~~~~l~~i~~aD~il~Vvd~~~~~~v~~v~nk~d~~~~~~~i~~el~~~d~~~l~~~~~~~~~~~~-~~~~Sa~~- 215 (359)
..++..+++..++++|++++|+|+++ +.++...+.+++...++ .+.++...+....+ .++++...
T Consensus 64 ~~~~~~~~l~~~~~ad~il~V~D~t~------------~~~~~~~~~~~l~~~gi-~l~~~~~~v~~~~~~~ggi~~~~~ 130 (233)
T cd01896 64 GKGRGRQVIAVARTADLILMVLDATK------------PEGHREILERELEGVGI-RLNKRPPNITIKKKKKGGINITST 130 (233)
T ss_pred chhHHHHHHHhhccCCEEEEEecCCc------------chhHHHHHHHHHHHcCc-eecCCCCeEEEEEEecCCEEEecc
Confidence 55677788899999999999999843 33345555555554443 12222222111111 13332111
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCCC-----CCCHHHHHHHH-HHhhhhcCCeEEEEeCCCcccCCCCCChhHHHHHHHHHh
Q 018241 216 EDAEKAALEKIQQALMDGKPARSV-----TLNDFERDSIK-QLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASD 289 (359)
Q Consensus 216 ~~~~~~ll~~i~~~L~~~~~~~~~-----~~t~~~~e~i~-~~~~l~~kp~~y~~nv~~~~~~~~~~~~~~~~i~~~~~~ 289 (359)
..-...-.+.+...|.+.+...+. +.|.++. +. -...+.+.|+++++|+.|. .. . ++...+++.
T Consensus 131 ~~~~~~~~~~v~~~l~~~~i~~~~v~~~~~~~~~~~--~~~~~~~~~y~p~iiV~NK~Dl--~~---~---~~~~~~~~~ 200 (233)
T cd01896 131 VPLTKLDEKTIKAILREYKIHNADVLIREDITVDDL--IDVIEGNRVYIPCLYVYNKIDL--IS---I---EELDLLARQ 200 (233)
T ss_pred CCCCCCCHHHHHHHHHHhCeeeEEEEEccCCCHHHH--HHHHhCCceEeeEEEEEECccC--CC---H---HHHHHHhcC
Confidence 111111235566666665555542 3453322 22 1345789999999999863 21 1 233344433
Q ss_pred cCCeEEEeeHHHHHHHcCCCHHHHHHHHHHcCCCCchHHHHHHHHHHhcCCeEEecC
Q 018241 290 LQSGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTS 346 (359)
Q Consensus 290 ~~~~~i~~sa~le~~l~~l~~~~~~~~l~~~~~~~~~l~~li~~~~~~L~li~ffT~ 346 (359)
..++++||+. ..+++.+.+.+++.|+||++||+
T Consensus 201 --~~~~~~SA~~----------------------g~gi~~l~~~i~~~L~~irvy~k 233 (233)
T cd01896 201 --PNSVVISAEK----------------------GLNLDELKERIWDKLGLIRVYTK 233 (233)
T ss_pred --CCEEEEcCCC----------------------CCCHHHHHHHHHHHhCcEEEecC
Confidence 3477888653 35677899999999999999995
No 19
>PRK00089 era GTPase Era; Reviewed
Probab=99.88 E-value=2.4e-22 Score=190.41 Aligned_cols=190 Identities=28% Similarity=0.313 Sum_probs=144.2
Q ss_pred cEEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCCcCCCC
Q 018241 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGAS 136 (359)
Q Consensus 57 ~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~~~~~ 136 (359)
..|+++|.||||||||+|+|+|...+.+++.|.||++...+....+ ..++.|+||||+.+...
T Consensus 6 g~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~i~~i~~~~-----------------~~qi~~iDTPG~~~~~~ 68 (292)
T PRK00089 6 GFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRIRGIVTED-----------------DAQIIFVDTPGIHKPKR 68 (292)
T ss_pred EEEEEECCCCCCHHHHHHHHhCCceeecCCCCCcccccEEEEEEcC-----------------CceEEEEECCCCCCchh
Confidence 4699999999999999999998888899999999998888776544 35799999999976543
Q ss_pred c-CcchhhhHhhHHHhcccceEEeecCCC----------------ccEEEeCCcccCCcchHHHHhhhhhccHHHHHHHH
Q 018241 137 Q-GEGLGNKFLSHIREVDSILQVVRCFED----------------NDIVHVNGKVDPKSDVDVINLELVFSDLDQIEKRM 199 (359)
Q Consensus 137 ~-~~~~~~~~l~~i~~aD~il~Vvd~~~~----------------~~v~~v~nk~d~~~~~~~i~~el~~~d~~~l~~~~ 199 (359)
. ++.+.......+.++|++++|+|+++. .+++.+.||+|...+...+... ++.+.+
T Consensus 69 ~l~~~~~~~~~~~~~~~D~il~vvd~~~~~~~~~~~i~~~l~~~~~pvilVlNKiDl~~~~~~l~~~-----~~~l~~-- 141 (292)
T PRK00089 69 ALNRAMNKAAWSSLKDVDLVLFVVDADEKIGPGDEFILEKLKKVKTPVILVLNKIDLVKDKEELLPL-----LEELSE-- 141 (292)
T ss_pred HHHHHHHHHHHHHHhcCCEEEEEEeCCCCCChhHHHHHHHHhhcCCCEEEEEECCcCCCCHHHHHHH-----HHHHHh--
Confidence 2 233344556778999999999999771 3678899999987443332221 111111
Q ss_pred HHHhhhccccccchhhHHHHHHHHHHHHHHhcCCCCCCCC-CCCHH-----HHHHHH-HHhhhhcCCeEEEEeCCCcccC
Q 018241 200 EKLKKGKAKDSQSKLKEDAEKAALEKIQQALMDGKPARSV-TLNDF-----ERDSIK-QLCLLTMKPIIYVANVAESDLA 272 (359)
Q Consensus 200 ~~~~~~~~~~~~Sa~~~~~~~~ll~~i~~~L~~~~~~~~~-~~t~~-----~~e~i~-~~~~l~~kp~~y~~nv~~~~~~ 272 (359)
........++||+.+.++.++++.+.+.+++++++++. .+|+. ..|+|| +++..+.+++||.+.+..+++.
T Consensus 142 --~~~~~~i~~iSA~~~~gv~~L~~~L~~~l~~~~~~y~~~~~td~~~r~~~~EiiRe~~~~~l~~e~p~~~~v~~~~~~ 219 (292)
T PRK00089 142 --LMDFAEIVPISALKGDNVDELLDVIAKYLPEGPPYYPEDQITDRPERFLAAEIIREKLLRLLGDELPYSVAVEIEKFE 219 (292)
T ss_pred --hCCCCeEEEecCCCCCCHHHHHHHHHHhCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhhCCccCCceEEEEEEEEE
Confidence 11111115789999999999999999999999998885 34433 688899 8999999999999998877664
No 20
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=99.87 E-value=2.2e-22 Score=185.44 Aligned_cols=107 Identities=36% Similarity=0.629 Sum_probs=93.9
Q ss_pred cEEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCCcCCCC
Q 018241 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGAS 136 (359)
Q Consensus 57 ~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~~~~~ 136 (359)
..||+||+||||||||+|+|+ .+...+++|+|||..|+.|.+.++| ..++.+-|+||++++++
T Consensus 197 advGLVG~PNAGKSTLL~als-~AKpkVa~YaFTTL~P~iG~v~ydd----------------f~q~tVADiPGiI~GAh 259 (366)
T KOG1489|consen 197 ADVGLVGFPNAGKSTLLNALS-RAKPKVAHYAFTTLRPHIGTVNYDD----------------FSQITVADIPGIIEGAH 259 (366)
T ss_pred cccceecCCCCcHHHHHHHhh-ccCCcccccceeeeccccceeeccc----------------cceeEeccCcccccccc
Confidence 579999999999999999999 8888999999999999999998887 56799999999999999
Q ss_pred cCcchhhhHhhHHHhcccceEEeecCCCccEEEeCCcccCCcchHHHHhhh
Q 018241 137 QGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPKSDVDVINLEL 187 (359)
Q Consensus 137 ~~~~~~~~~l~~i~~aD~il~Vvd~~~~~~v~~v~nk~d~~~~~~~i~~el 187 (359)
.++|++-.||.|+..|+.+++|||++.... ..|..++..+..|+
T Consensus 260 ~nkGlG~~FLrHiER~~~l~fVvD~s~~~~-------~~p~~~~~lL~~EL 303 (366)
T KOG1489|consen 260 MNKGLGYKFLRHIERCKGLLFVVDLSGKQL-------RNPWQQLQLLIEEL 303 (366)
T ss_pred ccCcccHHHHHHHHhhceEEEEEECCCccc-------CCHHHHHHHHHHHH
Confidence 999999999999999999999999976421 34555555555544
No 21
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.87 E-value=1.1e-21 Score=188.56 Aligned_cols=149 Identities=33% Similarity=0.496 Sum_probs=117.2
Q ss_pred cEEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCCcCCCC
Q 018241 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGAS 136 (359)
Q Consensus 57 ~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~~~~~ 136 (359)
..|+|||+||||||||+|+|+ .....++++||||++|+.|.+.+++ ..++.++||||++++++
T Consensus 159 adVglVG~PNaGKSTLln~ls-~a~~~va~ypfTT~~p~~G~v~~~~----------------~~~~~i~D~PGli~ga~ 221 (335)
T PRK12299 159 ADVGLVGLPNAGKSTLISAVS-AAKPKIADYPFTTLHPNLGVVRVDD----------------YKSFVIADIPGLIEGAS 221 (335)
T ss_pred CCEEEEcCCCCCHHHHHHHHH-cCCCccCCCCCceeCceEEEEEeCC----------------CcEEEEEeCCCccCCCC
Confidence 579999999999999999999 5667899999999999999998854 34699999999999998
Q ss_pred cCcchhhhHhhHHHhcccceEEeecCCC----------------------ccEEEeCCcccCCcchHHHHhhhhhccHHH
Q 018241 137 QGEGLGNKFLSHIREVDSILQVVRCFED----------------------NDIVHVNGKVDPKSDVDVINLELVFSDLDQ 194 (359)
Q Consensus 137 ~~~~~~~~~l~~i~~aD~il~Vvd~~~~----------------------~~v~~v~nk~d~~~~~~~i~~el~~~d~~~ 194 (359)
.+.+++..|+.++..+|+++||+|+++. .+++.+.||+|..........++
T Consensus 222 ~~~gLg~~flrhie~a~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~~~~~~~~~------- 294 (335)
T PRK12299 222 EGAGLGHRFLKHIERTRLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLDEEEEREKRA------- 294 (335)
T ss_pred ccccHHHHHHHHhhhcCEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCCchhHHHHHH-------
Confidence 8889999999999999999999999852 24688999999764332211110
Q ss_pred HHHHHHHHhhhccccccchhhHHHHHHHHHHHHHHhcC
Q 018241 195 IEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMD 232 (359)
Q Consensus 195 l~~~~~~~~~~~~~~~~Sa~~~~~~~~ll~~i~~~L~~ 232 (359)
........ .....+||+++.++.++++.+.+.+.+
T Consensus 295 -~~~~~~~~--~~i~~iSAktg~GI~eL~~~L~~~l~~ 329 (335)
T PRK12299 295 -ALELAALG--GPVFLISAVTGEGLDELLRALWELLEE 329 (335)
T ss_pred -HHHHHhcC--CCEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 11011110 112578999999999999999888864
No 22
>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]
Probab=99.86 E-value=2.6e-22 Score=179.35 Aligned_cols=230 Identities=23% Similarity=0.314 Sum_probs=159.4
Q ss_pred CCcEEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCCcCC
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~~~ 134 (359)
...+|++||+|.+|||||+..+| ...+..+.|.|||....+|++.+.+ +.|+++|.||++.+
T Consensus 61 GdaRValIGfPSVGKStlLs~iT-~T~SeaA~yeFTTLtcIpGvi~y~g-----------------a~IQllDLPGIieG 122 (364)
T KOG1486|consen 61 GDARVALIGFPSVGKSTLLSKIT-STHSEAASYEFTTLTCIPGVIHYNG-----------------ANIQLLDLPGIIEG 122 (364)
T ss_pred CCeEEEEecCCCccHHHHHHHhh-cchhhhhceeeeEEEeecceEEecC-----------------ceEEEecCcccccc
Confidence 45799999999999999999999 7778888999999999999999984 77999999999999
Q ss_pred CCcCcchhhhHhhHHHhcccceEEeecCCCccEEEeCCcccCCcchHHHHhhhhhccHHHHHHHHHHHhhhccccccchh
Q 018241 135 ASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKL 214 (359)
Q Consensus 135 ~~~~~~~~~~~l~~i~~aD~il~Vvd~~~~~~v~~v~nk~d~~~~~~~i~~el~~~d~~~l~~~~~~~~~~~~~~~~Sa~ 214 (359)
++++.|.+++..+..+.||+|+.|+|++.. ..+.+.++.||.--.+..-.++...+.+..+.+++|..
T Consensus 123 AsqgkGRGRQviavArtaDlilMvLDatk~------------e~qr~~le~ELe~vGiRLNk~~Pniy~k~kk~gGi~f~ 190 (364)
T KOG1486|consen 123 ASQGKGRGRQVIAVARTADLILMVLDATKS------------EDQREILEKELEAVGIRLNKRKPNIYFKKKKTGGISFN 190 (364)
T ss_pred cccCCCCCceEEEEeecccEEEEEecCCcc------------hhHHHHHHHHHHHhceeccCCCCCeEEEeeccCCeEEe
Confidence 999999999999999999999999999432 23445666665544432111111111111222455433
Q ss_pred hHHHHHHH-HHHHHHHhcCCCCCCCC-----CCCHHHHHHHH-HHhhhhcCCeEEEEeCCCcccCCCCCChhHHHHHHHH
Q 018241 215 KEDAEKAA-LEKIQQALMDGKPARSV-----TLNDFERDSIK-QLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLA 287 (359)
Q Consensus 215 ~~~~~~~l-l~~i~~~L~~~~~~~~~-----~~t~~~~e~i~-~~~~l~~kp~~y~~nv~~~~~~~~~~~~~~~~i~~~~ 287 (359)
........ -+.+...|.+.+..+.. +.|.+ +.|. ......+-+.+|+.|+.+ .-.++++.+.+
T Consensus 191 ~T~~lT~~~ek~i~~ILheykI~Naevl~ReD~t~D--dfIDvi~gnr~Y~~ClYvYnKID--------~vs~eevdrlA 260 (364)
T KOG1486|consen 191 TTVPLTHCDEKLIYTILHEYKIHNAEVLFREDCTVD--DFIDVIEGNRVYIKCLYVYNKID--------QVSIEEVDRLA 260 (364)
T ss_pred eeeccccccHHHHHHHHHHHeeccceEEEecCCChH--HHHHHHhccceEEEEEEEeeccc--------eecHHHHHHHh
Confidence 22221111 12334445555554442 34533 2333 245678889999999865 23456677766
Q ss_pred HhcCCeEEEeeHHHHHHHcCCCHHHHHHHHHHcCCCCchHHHHHHHHHHhcCCeEEecCCC
Q 018241 288 SDLQSGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGE 348 (359)
Q Consensus 288 ~~~~~~~i~~sa~le~~l~~l~~~~~~~~l~~~~~~~~~l~~li~~~~~~L~li~ffT~g~ 348 (359)
...+ .+++|+.+. -.++++++..|+.|+|.++||+.+
T Consensus 261 r~Pn--svViSC~m~----------------------lnld~lle~iWe~l~L~rvYtKk~ 297 (364)
T KOG1486|consen 261 RQPN--SVVISCNMK----------------------LNLDRLLERIWEELNLVRVYTKKK 297 (364)
T ss_pred cCCC--cEEEEeccc----------------------cCHHHHHHHHHHHhceEEEEecCC
Confidence 5534 467776653 346678999999999999999864
No 23
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.86 E-value=3.9e-22 Score=193.08 Aligned_cols=143 Identities=28% Similarity=0.277 Sum_probs=115.3
Q ss_pred cEEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCCcCCC-
Q 018241 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA- 135 (359)
Q Consensus 57 ~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~~~~- 135 (359)
+.|+|||+||||||||||+|+|+..+.|+++||+|+|+..+.+.+.+ ..+.++||+|+....
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~y~~~~~~~-----------------~~f~lIDTgGl~~~~~ 66 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDAEWLG-----------------REFILIDTGGLDDGDE 66 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCeeeEeecCCCCccCCccceeEEcC-----------------ceEEEEECCCCCcCCc
Confidence 68999999999999999999999999999999999999999988874 569999999998655
Q ss_pred -CcCcchhhhHhhHHHhcccceEEeecCC----------------CccEEEeCCcccCCcchHHHHhhhhhccHHHHHHH
Q 018241 136 -SQGEGLGNKFLSHIREVDSILQVVRCFE----------------DNDIVHVNGKVDPKSDVDVINLELVFSDLDQIEKR 198 (359)
Q Consensus 136 -~~~~~~~~~~l~~i~~aD~il~Vvd~~~----------------~~~v~~v~nk~d~~~~~~~i~~el~~~d~~~l~~~ 198 (359)
.-.+.+..+++.++..||++++|||+.. +.+++.|.||+|....... ..| ++.+.
T Consensus 67 ~~l~~~i~~Qa~~Ai~eADvilfvVD~~~Git~~D~~ia~~Lr~~~kpviLvvNK~D~~~~e~~-~~e--fyslG----- 138 (444)
T COG1160 67 DELQELIREQALIAIEEADVILFVVDGREGITPADEEIAKILRRSKKPVILVVNKIDNLKAEEL-AYE--FYSLG----- 138 (444)
T ss_pred hHHHHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEEEEEEcccCchhhhh-HHH--HHhcC-----
Confidence 2355667888999999999999999877 2479999999997732211 111 01100
Q ss_pred HHHHhhhccccccchhhHHHHHHHHHHHHHHh
Q 018241 199 MEKLKKGKAKDSQSKLKEDAEKAALEKIQQAL 230 (359)
Q Consensus 199 ~~~~~~~~~~~~~Sa~~~~~~~~ll~~i~~~L 230 (359)
..+..++||..+.++.+|++.+.+.|
T Consensus 139 ------~g~~~~ISA~Hg~Gi~dLld~v~~~l 164 (444)
T COG1160 139 ------FGEPVPISAEHGRGIGDLLDAVLELL 164 (444)
T ss_pred ------CCCceEeehhhccCHHHHHHHHHhhc
Confidence 01115789999999999999999998
No 24
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.86 E-value=4.4e-21 Score=189.05 Aligned_cols=148 Identities=35% Similarity=0.518 Sum_probs=116.3
Q ss_pred cEEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCCcCCCC
Q 018241 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGAS 136 (359)
Q Consensus 57 ~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~~~~~ 136 (359)
..|+|||+||||||||+|+|+ +..+.++++||||+.|+.|.+.+++ +.++.++||||+.++++
T Consensus 159 adVglVG~pNaGKSTLLn~Lt-~ak~kIa~ypfTTl~PnlG~v~~~~----------------~~~~~laD~PGliega~ 221 (424)
T PRK12297 159 ADVGLVGFPNVGKSTLLSVVS-NAKPKIANYHFTTLVPNLGVVETDD----------------GRSFVMADIPGLIEGAS 221 (424)
T ss_pred CcEEEEcCCCCCHHHHHHHHH-cCCCccccCCcceeceEEEEEEEeC----------------CceEEEEECCCCccccc
Confidence 489999999999999999999 6667789999999999999988764 35699999999999888
Q ss_pred cCcchhhhHhhHHHhcccceEEeecCCC-------------------------ccEEEeCCcccCCcchHHHHhhhhhcc
Q 018241 137 QGEGLGNKFLSHIREVDSILQVVRCFED-------------------------NDIVHVNGKVDPKSDVDVINLELVFSD 191 (359)
Q Consensus 137 ~~~~~~~~~l~~i~~aD~il~Vvd~~~~-------------------------~~v~~v~nk~d~~~~~~~i~~el~~~d 191 (359)
.+.+++..|+.++..+|+++||+|+++. .+.+.+.||+|.....+.
T Consensus 222 ~~~gLg~~fLrhier~~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~~~~e~--------- 292 (424)
T PRK12297 222 EGVGLGHQFLRHIERTRVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDLPEAEEN--------- 292 (424)
T ss_pred ccchHHHHHHHHHhhCCEEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCCcCCHHH---------
Confidence 8889999999999999999999999631 246778899995221111
Q ss_pred HHHHHHHHHHHhhhccccccchhhHHHHHHHHHHHHHHhcCCCC
Q 018241 192 LDQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMDGKP 235 (359)
Q Consensus 192 ~~~l~~~~~~~~~~~~~~~~Sa~~~~~~~~ll~~i~~~L~~~~~ 235 (359)
++.....+. .....+||+++.++.++++.+.+.+.+.+.
T Consensus 293 ---l~~l~~~l~--~~i~~iSA~tgeGI~eL~~~L~~~l~~~~~ 331 (424)
T PRK12297 293 ---LEEFKEKLG--PKVFPISALTGQGLDELLYAVAELLEETPE 331 (424)
T ss_pred ---HHHHHHHhC--CcEEEEeCCCCCCHHHHHHHHHHHHHhCcc
Confidence 111111111 111578999999999999999999876543
No 25
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.85 E-value=2e-21 Score=166.39 Aligned_cols=140 Identities=29% Similarity=0.404 Sum_probs=100.4
Q ss_pred cEEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCCcCCCC
Q 018241 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGAS 136 (359)
Q Consensus 57 ~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~~~~~ 136 (359)
++|+++|.||||||||||+|||.. +.++++||+|++...|.+.+.+ .++.|+|+||+....+
T Consensus 1 i~ialvG~PNvGKStLfN~Ltg~~-~~v~n~pG~Tv~~~~g~~~~~~-----------------~~~~lvDlPG~ysl~~ 62 (156)
T PF02421_consen 1 IRIALVGNPNVGKSTLFNALTGAK-QKVGNWPGTTVEKKEGIFKLGD-----------------QQVELVDLPGIYSLSS 62 (156)
T ss_dssp -EEEEEESTTSSHHHHHHHHHTTS-EEEEESTTSSSEEEEEEEEETT-----------------EEEEEEE----SSSSS
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC-ceecCCCCCCeeeeeEEEEecC-----------------ceEEEEECCCcccCCC
Confidence 479999999999999999999555 8899999999999999998874 6799999999976543
Q ss_pred c--CcchhhhHhhHHHhcccceEEeecCC--------------CccEEEeCCcccCCcchHHHHhhhhhccHHHHHHHHH
Q 018241 137 Q--GEGLGNKFLSHIREVDSILQVVRCFE--------------DNDIVHVNGKVDPKSDVDVINLELVFSDLDQIEKRME 200 (359)
Q Consensus 137 ~--~~~~~~~~l~~i~~aD~il~Vvd~~~--------------~~~v~~v~nk~d~~~~~~~i~~el~~~d~~~l~~~~~ 200 (359)
. .+.+...++. ....|++++|+|++. ..|++.++|++|..+... ..-|.+.+.+.+.
T Consensus 63 ~s~ee~v~~~~l~-~~~~D~ii~VvDa~~l~r~l~l~~ql~e~g~P~vvvlN~~D~a~~~g------~~id~~~Ls~~Lg 135 (156)
T PF02421_consen 63 KSEEERVARDYLL-SEKPDLIIVVVDATNLERNLYLTLQLLELGIPVVVVLNKMDEAERKG------IEIDAEKLSERLG 135 (156)
T ss_dssp SSHHHHHHHHHHH-HTSSSEEEEEEEGGGHHHHHHHHHHHHHTTSSEEEEEETHHHHHHTT------EEE-HHHHHHHHT
T ss_pred CCcHHHHHHHHHh-hcCCCEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEEeCHHHHHHcC------CEECHHHHHHHhC
Confidence 2 3334344443 367999999999987 457899999999654322 1223444444431
Q ss_pred HHhhhccccccchhhHHHHHHHHHHH
Q 018241 201 KLKKGKAKDSQSKLKEDAEKAALEKI 226 (359)
Q Consensus 201 ~~~~~~~~~~~Sa~~~~~~~~ll~~i 226 (359)
.+..++||+.+.+++++.+.|
T Consensus 136 -----~pvi~~sa~~~~g~~~L~~~I 156 (156)
T PF02421_consen 136 -----VPVIPVSARTGEGIDELKDAI 156 (156)
T ss_dssp -----S-EEEEBTTTTBTHHHHHHHH
T ss_pred -----CCEEEEEeCCCcCHHHHHhhC
Confidence 112578899999988888764
No 26
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.85 E-value=7.7e-21 Score=189.73 Aligned_cols=149 Identities=28% Similarity=0.484 Sum_probs=112.5
Q ss_pred CcEEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCCcCCC
Q 018241 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA 135 (359)
Q Consensus 56 ~~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~~~~ 135 (359)
..+|+|||+||||||||+|+|+ .....++++||||++|+.|.+.+++ .+++|+||||+++++
T Consensus 159 ~adV~LVG~PNAGKSTLln~Ls-~akpkIadypfTTl~P~lGvv~~~~-----------------~~f~laDtPGliega 220 (500)
T PRK12296 159 VADVGLVGFPSAGKSSLISALS-AAKPKIADYPFTTLVPNLGVVQAGD-----------------TRFTVADVPGLIPGA 220 (500)
T ss_pred cceEEEEEcCCCCHHHHHHHHh-cCCccccccCcccccceEEEEEECC-----------------eEEEEEECCCCcccc
Confidence 3589999999999999999999 5667789999999999999998874 569999999999988
Q ss_pred CcCcchhhhHhhHHHhcccceEEeecCCC-----------------------------------ccEEEeCCcccCCcch
Q 018241 136 SQGEGLGNKFLSHIREVDSILQVVRCFED-----------------------------------NDIVHVNGKVDPKSDV 180 (359)
Q Consensus 136 ~~~~~~~~~~l~~i~~aD~il~Vvd~~~~-----------------------------------~~v~~v~nk~d~~~~~ 180 (359)
+.+.+++..|+.++..||+++||||+++. .+++.+.||+|.....
T Consensus 221 s~g~gLg~~fLrhieradvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da~ 300 (500)
T PRK12296 221 SEGKGLGLDFLRHIERCAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDAR 300 (500)
T ss_pred chhhHHHHHHHHHHHhcCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhhH
Confidence 88888999999999999999999999631 2356677777754221
Q ss_pred HHHHhhhhhccHHHHHHHHHHHhhhccccccchhhHHHHHHHHHHHHHHhcCC
Q 018241 181 DVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMDG 233 (359)
Q Consensus 181 ~~i~~el~~~d~~~l~~~~~~~~~~~~~~~~Sa~~~~~~~~ll~~i~~~L~~~ 233 (359)
+ +.. .+...+... ......+||+.+.++.+++..+.+.+...
T Consensus 301 e-l~e--------~l~~~l~~~--g~~Vf~ISA~tgeGLdEL~~~L~ell~~~ 342 (500)
T PRK12296 301 E-LAE--------FVRPELEAR--GWPVFEVSAASREGLRELSFALAELVEEA 342 (500)
T ss_pred H-HHH--------HHHHHHHHc--CCeEEEEECCCCCCHHHHHHHHHHHHHhh
Confidence 1 111 011111110 01115678888888888888888888553
No 27
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.84 E-value=2.1e-20 Score=179.51 Aligned_cols=146 Identities=36% Similarity=0.562 Sum_probs=113.0
Q ss_pred cEEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCCcCCCC
Q 018241 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGAS 136 (359)
Q Consensus 57 ~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~~~~~ 136 (359)
..|+|||+||||||||+|+|+ .....++++||||++|+.|.+.+++ ..++.++||||+.++++
T Consensus 158 adV~lvG~pnaGKSTLl~~lt-~~~~~va~y~fTT~~p~ig~v~~~~----------------~~~~~i~D~PGli~~a~ 220 (329)
T TIGR02729 158 ADVGLVGLPNAGKSTLISAVS-AAKPKIADYPFTTLVPNLGVVRVDD----------------GRSFVIADIPGLIEGAS 220 (329)
T ss_pred ccEEEEcCCCCCHHHHHHHHh-cCCccccCCCCCccCCEEEEEEeCC----------------ceEEEEEeCCCcccCCc
Confidence 579999999999999999999 5667799999999999999998764 25799999999999888
Q ss_pred cCcchhhhHhhHHHhcccceEEeecCCC-------------------------ccEEEeCCcccCCcchHHHHhhhhhcc
Q 018241 137 QGEGLGNKFLSHIREVDSILQVVRCFED-------------------------NDIVHVNGKVDPKSDVDVINLELVFSD 191 (359)
Q Consensus 137 ~~~~~~~~~l~~i~~aD~il~Vvd~~~~-------------------------~~v~~v~nk~d~~~~~~~i~~el~~~d 191 (359)
...+++..|+.++..||++++|+|+++. .+++.+.||+|..... .... +
T Consensus 221 ~~~gLg~~flrhierad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~~-~~~~-~---- 294 (329)
T TIGR02729 221 EGAGLGHRFLKHIERTRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLLDEE-ELAE-L---- 294 (329)
T ss_pred ccccHHHHHHHHHHhhCEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCCChH-HHHH-H----
Confidence 8888999999999999999999999853 2467788888876432 1111 0
Q ss_pred HHHHHHHHHHHhhhccccccchhhHHHHHHHHHHHHHHh
Q 018241 192 LDQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQAL 230 (359)
Q Consensus 192 ~~~l~~~~~~~~~~~~~~~~Sa~~~~~~~~ll~~i~~~L 230 (359)
.+.+.+ ... .....+||+.+.++.++++.+.+.|
T Consensus 295 ~~~l~~---~~~--~~vi~iSAktg~GI~eL~~~I~~~l 328 (329)
T TIGR02729 295 LKELKK---ALG--KPVFPISALTGEGLDELLYALAELL 328 (329)
T ss_pred HHHHHH---HcC--CcEEEEEccCCcCHHHHHHHHHHHh
Confidence 001111 110 1114678899888889888887765
No 28
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.84 E-value=6.4e-21 Score=185.09 Aligned_cols=159 Identities=26% Similarity=0.287 Sum_probs=126.4
Q ss_pred hhhhhhhhccccCCcEEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCCCccchhccccccccccCce
Q 018241 43 SRRRFSSASKISMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPAS 122 (359)
Q Consensus 43 ~~~~~~~~~~~~~~~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~ 122 (359)
.+....+++....+++++|+|+||||||||+|+|++++.+.|++.||||||.....+.+. +..
T Consensus 204 ll~~~~~g~ilr~G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GTTRDviee~i~i~-----------------G~p 266 (454)
T COG0486 204 LLATAKQGKILREGLKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEEDINLN-----------------GIP 266 (454)
T ss_pred HHHhhhhhhhhhcCceEEEECCCCCcHHHHHHHHhcCCceEecCCCCCccceEEEEEEEC-----------------CEE
Confidence 345566778888999999999999999999999999999999999999999999999888 578
Q ss_pred EEEEecCCCcCCCCcCcchh-hhHhhHHHhcccceEEeecCCC---------------ccEEEeCCcccCCcchHHHHhh
Q 018241 123 VEFVDIAGLVKGASQGEGLG-NKFLSHIREVDSILQVVRCFED---------------NDIVHVNGKVDPKSDVDVINLE 186 (359)
Q Consensus 123 i~lvDtpG~~~~~~~~~~~~-~~~l~~i~~aD~il~Vvd~~~~---------------~~v~~v~nk~d~~~~~~~i~~e 186 (359)
+.++||+|+.+....-+.+| .+....+.+||++++|+|+++. .+++++.||.|...+.....
T Consensus 267 v~l~DTAGiRet~d~VE~iGIeRs~~~i~~ADlvL~v~D~~~~~~~~d~~~~~~~~~~~~~i~v~NK~DL~~~~~~~~-- 344 (454)
T COG0486 267 VRLVDTAGIRETDDVVERIGIERAKKAIEEADLVLFVLDASQPLDKEDLALIELLPKKKPIIVVLNKADLVSKIELES-- 344 (454)
T ss_pred EEEEecCCcccCccHHHHHHHHHHHHHHHhCCEEEEEEeCCCCCchhhHHHHHhcccCCCEEEEEechhcccccccch--
Confidence 99999999986665544444 5678889999999999999983 24788999999876543100
Q ss_pred hhhccHHHHHHHHHHHhhhccccccchhhHHHHHHHHHHHHHHhcCC
Q 018241 187 LVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMDG 233 (359)
Q Consensus 187 l~~~d~~~l~~~~~~~~~~~~~~~~Sa~~~~~~~~ll~~i~~~L~~~ 233 (359)
+ ++........+|++++.++..|.+.+.+.+...
T Consensus 345 --------~-----~~~~~~~~i~iSa~t~~Gl~~L~~~i~~~~~~~ 378 (454)
T COG0486 345 --------E-----KLANGDAIISISAKTGEGLDALREAIKQLFGKG 378 (454)
T ss_pred --------h-----hccCCCceEEEEecCccCHHHHHHHHHHHHhhc
Confidence 0 111111114678999999999999999888644
No 29
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.83 E-value=5.3e-20 Score=168.90 Aligned_cols=202 Identities=19% Similarity=0.156 Sum_probs=147.6
Q ss_pred CCcEEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCCcCC
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~~~ 134 (359)
..++||+||.||||||||.|.+.|...+.++.++.||+..+.|.+.-++ .|+.|+||||++..
T Consensus 71 k~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~~ilgi~ts~e-----------------TQlvf~DTPGlvs~ 133 (379)
T KOG1423|consen 71 KSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHRILGIITSGE-----------------TQLVFYDTPGLVSK 133 (379)
T ss_pred eEEEEEEEcCCCcchhhhhhHhhCCccccccccccceeeeeeEEEecCc-----------------eEEEEecCCccccc
Confidence 3489999999999999999999999999999999999999999988774 78999999999855
Q ss_pred CCc-Ccchhh----hHhhHHHhcccceEEeecCCC-----------------ccEEEeCCcccCCcchHHHHhhhhhccH
Q 018241 135 ASQ-GEGLGN----KFLSHIREVDSILQVVRCFED-----------------NDIVHVNGKVDPKSDVDVINLELVFSDL 192 (359)
Q Consensus 135 ~~~-~~~~~~----~~l~~i~~aD~il~Vvd~~~~-----------------~~v~~v~nk~d~~~~~~~i~~el~~~d~ 192 (359)
... ...+.. ....++.+||++++|+|+++. .+-+.+.|++|.+.....+..-...---
T Consensus 134 ~~~r~~~l~~s~lq~~~~a~q~AD~vvVv~Das~tr~~l~p~vl~~l~~ys~ips~lvmnkid~~k~k~~Ll~l~~~Lt~ 213 (379)
T KOG1423|consen 134 KMHRRHHLMMSVLQNPRDAAQNADCVVVVVDASATRTPLHPRVLHMLEEYSKIPSILVMNKIDKLKQKRLLLNLKDLLTN 213 (379)
T ss_pred chhhhHHHHHHhhhCHHHHHhhCCEEEEEEeccCCcCccChHHHHHHHHHhcCCceeeccchhcchhhhHHhhhHHhccc
Confidence 432 333332 345678899999999999952 2356789999988665443321111000
Q ss_pred HHHHH-HHHHHhhh--cc----------------ccccchhhHHHHHHHHHHHHHHhcCCCCCCCCC-CCHH-----HHH
Q 018241 193 DQIEK-RMEKLKKG--KA----------------KDSQSKLKEDAEKAALEKIQQALMDGKPARSVT-LNDF-----ERD 247 (359)
Q Consensus 193 ~~l~~-~~~~~~~~--~~----------------~~~~Sa~~~~~~~~ll~~i~~~L~~~~~~~~~~-~t~~-----~~e 247 (359)
..+.+ .++...+. .+ .+.+||..|.++.++-+.+....+.++|.++.. .|++ -.+
T Consensus 214 g~l~~~kl~v~~~f~~~p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsqa~~gpW~y~a~i~T~~s~e~l~~e 293 (379)
T KOG1423|consen 214 GELAKLKLEVQEKFTDVPSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMSQAPPGPWKYPADIVTEESPEFLCSE 293 (379)
T ss_pred cccchhhhhHHHHhccCCcccccccccCcccceeEEEEecccccCHHHHHHHHHhcCCCCCCCCCcccccccCHHHHHHH
Confidence 11111 11111110 11 156899999999999999999999999999853 3433 467
Q ss_pred HHH-HHhhhhcCCeEEEEeCCCcccCC
Q 018241 248 SIK-QLCLLTMKPIIYVANVAESDLAD 273 (359)
Q Consensus 248 ~i~-~~~~l~~kp~~y~~nv~~~~~~~ 273 (359)
++| .++..+.+++||.+.+...+|.+
T Consensus 294 ~VReklLd~~pqEVPY~lq~~i~~w~e 320 (379)
T KOG1423|consen 294 SVREKLLDHLPQEVPYNLQVRILSWKE 320 (379)
T ss_pred HHHHHHHhhCccccCcceEEEEEEeee
Confidence 788 78888999999988887766653
No 30
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.81 E-value=6e-20 Score=177.89 Aligned_cols=191 Identities=20% Similarity=0.194 Sum_probs=132.8
Q ss_pred CCCccchhhhhhhcCccccCCCCcchhhhhhhhhccc---cCCcEEEEEecCCCChhHHHHHHHhccccccCCCCceecc
Q 018241 17 LPKPMESSLFTRNANLIGVLGITTTSSRRRFSSASKI---SMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIE 93 (359)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~ 93 (359)
+..+.+.++ .||.|++.+.......++ ....... ..+++|||||+||+|||||+|+|+|+..+.+++.||||+|
T Consensus 139 ~g~~~~ISA--~Hg~Gi~dLld~v~~~l~-~~e~~~~~~~~~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~aGTTRD 215 (444)
T COG1160 139 FGEPVPISA--EHGRGIGDLLDAVLELLP-PDEEEEEEEETDPIKIAIIGRPNVGKSSLINAILGEERVIVSDIAGTTRD 215 (444)
T ss_pred CCCceEeeh--hhccCHHHHHHHHHhhcC-CcccccccccCCceEEEEEeCCCCCchHHHHHhccCceEEecCCCCcccc
Confidence 444444433 377777755544333332 1111111 2569999999999999999999999999999999999999
Q ss_pred ceeEEEEeCCCccchhccccccccccCceEEEEecCCCcCCCCcCcch----hhhHhhHHHhcccceEEeecCCC-----
Q 018241 94 PNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGASQGEGL----GNKFLSHIREVDSILQVVRCFED----- 164 (359)
Q Consensus 94 ~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~~~~~~~~~~----~~~~l~~i~~aD~il~Vvd~~~~----- 164 (359)
+....+.+.+ ..+.++||+|+.+...-.+++ ..+++.++..||++++|+|++++
T Consensus 216 ~I~~~~e~~~-----------------~~~~liDTAGiRrk~ki~e~~E~~Sv~rt~~aI~~a~vvllviDa~~~~~~qD 278 (444)
T COG1160 216 SIDIEFERDG-----------------RKYVLIDTAGIRRKGKITESVEKYSVARTLKAIERADVVLLVIDATEGISEQD 278 (444)
T ss_pred ceeeeEEECC-----------------eEEEEEECCCCCcccccccceEEEeehhhHhHHhhcCEEEEEEECCCCchHHH
Confidence 9999998875 569999999997654332222 25678899999999999999984
Q ss_pred -----------ccEEEeCCcccCCcchHHHHhhhhhccHHHHHHHHHHHhhhccccccchhhHHHHHHHHHHHHHHhcC
Q 018241 165 -----------NDIVHVNGKVDPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMD 232 (359)
Q Consensus 165 -----------~~v~~v~nk~d~~~~~~~i~~el~~~d~~~l~~~~~~~~~~~~~~~~Sa~~~~~~~~ll~~i~~~L~~ 232 (359)
..++.+.||.|.++.-+....+. -..+.+.+.++.- +....+||+.+.++..+++.+.+....
T Consensus 279 ~~ia~~i~~~g~~~vIvvNKWDl~~~~~~~~~~~----k~~i~~~l~~l~~-a~i~~iSA~~~~~i~~l~~~i~~~~~~ 352 (444)
T COG1160 279 LRIAGLIEEAGRGIVIVVNKWDLVEEDEATMEEF----KKKLRRKLPFLDF-APIVFISALTGQGLDKLFEAIKEIYEC 352 (444)
T ss_pred HHHHHHHHHcCCCeEEEEEccccCCchhhHHHHH----HHHHHHHhccccC-CeEEEEEecCCCChHHHHHHHHHHHHH
Confidence 35889999999887522222211 0112222222111 111578999999999999998888754
No 31
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.77 E-value=3.5e-18 Score=147.82 Aligned_cols=146 Identities=36% Similarity=0.588 Sum_probs=104.8
Q ss_pred EEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCCcCCCCc
Q 018241 58 RAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGASQ 137 (359)
Q Consensus 58 ~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~~~~~~ 137 (359)
+|++||++|||||||+|+|++ ....++.+|++|+++..+.+.+++ ...+.||||||+.+....
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~-~~~~v~~~~~~t~~~~~~~~~~~~----------------~~~~~l~DtpG~~~~~~~ 64 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISN-AKPKIADYPFTTLVPNLGVVRVDD----------------GRSFVVADIPGLIEGASE 64 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhc-CCccccCCCccccCCcceEEEcCC----------------CCeEEEEecCcccCcccc
Confidence 689999999999999999995 445788899999999999887654 237999999999755444
Q ss_pred CcchhhhHhhHHHhcccceEEeecCCC-----------------------ccEEEeCCcccCCcchHHHHhhhhhccHHH
Q 018241 138 GEGLGNKFLSHIREVDSILQVVRCFED-----------------------NDIVHVNGKVDPKSDVDVINLELVFSDLDQ 194 (359)
Q Consensus 138 ~~~~~~~~l~~i~~aD~il~Vvd~~~~-----------------------~~v~~v~nk~d~~~~~~~i~~el~~~d~~~ 194 (359)
...+...++..++.+|++++|+|+++. .+++.+.||+|....... ...
T Consensus 65 ~~~~~~~~~~~~~~~d~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~-~~~-------- 135 (170)
T cd01898 65 GKGLGHRFLRHIERTRLLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLDEEEL-FEL-------- 135 (170)
T ss_pred cCCchHHHHHHHHhCCEEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCCchhh-HHH--------
Confidence 445667888888899999999999864 235778899996543221 110
Q ss_pred HHHHHHHHhhhccccccchhhHHHHHHHHHHHHHHh
Q 018241 195 IEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQAL 230 (359)
Q Consensus 195 l~~~~~~~~~~~~~~~~Sa~~~~~~~~ll~~i~~~L 230 (359)
+....... .......+|++.+.++.++++.+.++|
T Consensus 136 ~~~~~~~~-~~~~~~~~Sa~~~~gi~~l~~~i~~~~ 170 (170)
T cd01898 136 LKELLKEL-WGKPVFPISALTGEGLDELLRKLAELL 170 (170)
T ss_pred HHHHHhhC-CCCCEEEEecCCCCCHHHHHHHHHhhC
Confidence 11111110 011114678899889888888877654
No 32
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=99.74 E-value=2.4e-18 Score=161.00 Aligned_cols=227 Identities=15% Similarity=0.163 Sum_probs=134.0
Q ss_pred EEEEEecCCCChhHHHHHHHhcccc-----ccC------------CCCceeccceeEEEEeCCCccchhccccccccccC
Q 018241 58 RAGIVGLPNVGKSTLFNAVVENGKA-----QAA------------NFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVP 120 (359)
Q Consensus 58 ~i~ivG~pn~GKSTL~n~L~~~~~~-----~~~------------~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~ 120 (359)
+|+|+|++|+|||||+|+|+..... .+. ...++|++.....+.+. +
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~-----------------~ 63 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWK-----------------D 63 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEEC-----------------C
Confidence 5899999999999999999732211 111 11233333333333333 5
Q ss_pred ceEEEEecCCCcCCCCcCcchhhhHhhHHHhcccceEEeecCCCccEEEeCCcccCCcchHHHHhhhhhccHHHHHHHHH
Q 018241 121 ASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPKSDVDVINLELVFSDLDQIEKRME 200 (359)
Q Consensus 121 ~~i~lvDtpG~~~~~~~~~~~~~~~l~~i~~aD~il~Vvd~~~~~~v~~v~nk~d~~~~~~~i~~el~~~d~~~l~~~~~ 200 (359)
.++.|+||||..++.. .....++.+|++++|||+.+. +... ++..+..+.....+.-
T Consensus 64 ~~i~liDTPG~~df~~-------~~~~~l~~aD~ailVVDa~~g------------~~~~----t~~~~~~~~~~~~p~i 120 (270)
T cd01886 64 HRINIIDTPGHVDFTI-------EVERSLRVLDGAVAVFDAVAG------------VEPQ----TETVWRQADRYNVPRI 120 (270)
T ss_pred EEEEEEECCCcHHHHH-------HHHHHHHHcCEEEEEEECCCC------------CCHH----HHHHHHHHHHcCCCEE
Confidence 7899999999865433 567888999999999998543 1110 0000000000000000
Q ss_pred HHhhhccccccchhhHHHHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHH-HHhhhhcCCeEEEEe----CCCcccCCCC
Q 018241 201 KLKKGKAKDSQSKLKEDAEKAALEKIQQALMDGKPARSVTLNDFERDSIK-QLCLLTMKPIIYVAN----VAESDLADPG 275 (359)
Q Consensus 201 ~~~~~~~~~~~Sa~~~~~~~~ll~~i~~~L~~~~~~~~~~~t~~~~e~i~-~~~~l~~kp~~y~~n----v~~~~~~~~~ 275 (359)
.+.++.+ ..+.....+++.+.+.+.. ...+..++..+...++ .+++++.|.+.|.-. ..+.++|
T Consensus 121 vviNK~D------~~~a~~~~~~~~l~~~l~~--~~~~~~~Pisa~~~f~g~vd~~~~~a~~~~~~~~~~~~~~~ip--- 189 (270)
T cd01886 121 AFVNKMD------RTGADFFRVVEQIREKLGA--NPVPLQLPIGEEDDFRGVVDLIEMKALYWDGELGEKIEETEIP--- 189 (270)
T ss_pred EEEECCC------CCCCCHHHHHHHHHHHhCC--CceEEEeccccCCCceEEEEccccEEEecccCCCceeEEecCC---
Confidence 0111111 1112234566667666632 2222233322233344 345566666666110 1122333
Q ss_pred CChhHHHHHHHHHhcCCeEEEeeHHHHHHHcCCCHHHHHHHHHHcCCCCchHHHHHHHHHHhcCCeEEecCC
Q 018241 276 SNPHVNEVMNLASDLQSGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSG 347 (359)
Q Consensus 276 ~~~~~~~i~~~~~~~~~~~i~~sa~le~~l~~l~~~~~~~~l~~~~~~~~~l~~li~~~~~~L~li~ffT~g 347 (359)
....+.++++... +-+.+++.|++.+++||++..++...+.+.++.++....++|||-.+
T Consensus 190 -~~~~~~~~~~r~~-----------l~e~vae~dd~L~e~yl~~~~~~~~el~~~l~~~~~~~~~~PV~~gS 249 (270)
T cd01886 190 -EDLLEEAEEAREE-----------LIETLAEFDDELMEKYLEGEEITEEEIKAAIRKGTIANKIVPVLCGS 249 (270)
T ss_pred -HHHHHHHHHHHHH-----------HHHHHhcCCHHHHHHHhCCCCCCHHHHHHHHHHHHHcCcEEEEEeCc
Confidence 4456667776554 67788999999999999999999999999999999999999999643
No 33
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.74 E-value=2.3e-17 Score=153.51 Aligned_cols=105 Identities=26% Similarity=0.350 Sum_probs=85.1
Q ss_pred CCcEEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCCcCC
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~~~ 134 (359)
..++|.|.|+||||||||+++|| .+...+++|||||+..+.|.+..+. .+++++||||+.+.
T Consensus 167 ~~pTivVaG~PNVGKSSlv~~lT-~AkpEvA~YPFTTK~i~vGhfe~~~-----------------~R~QvIDTPGlLDR 228 (346)
T COG1084 167 DLPTIVVAGYPNVGKSSLVRKLT-TAKPEVAPYPFTTKGIHVGHFERGY-----------------LRIQVIDTPGLLDR 228 (346)
T ss_pred CCCeEEEecCCCCcHHHHHHHHh-cCCCccCCCCccccceeEeeeecCC-----------------ceEEEecCCcccCC
Confidence 45899999999999999999999 9999999999999999999998885 45999999999754
Q ss_pred C-CcCcchhhhHhhHHHh-cccceEEeecCCC--------------------ccEEEeCCcccCC
Q 018241 135 A-SQGEGLGNKFLSHIRE-VDSILQVVRCFED--------------------NDIVHVNGKVDPK 177 (359)
Q Consensus 135 ~-~~~~~~~~~~l~~i~~-aD~il~Vvd~~~~--------------------~~v~~v~nk~d~~ 177 (359)
. .+--.+..+...++++ .++|+|++|.++. .+++.|.||+|-.
T Consensus 229 Pl~ErN~IE~qAi~AL~hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f~~p~v~V~nK~D~~ 293 (346)
T COG1084 229 PLEERNEIERQAILALRHLAGVILFLFDPSETCGYSLEEQISLLEEIKELFKAPIVVVINKIDIA 293 (346)
T ss_pred ChHHhcHHHHHHHHHHHHhcCeEEEEEcCccccCCCHHHHHHHHHHHHHhcCCCeEEEEeccccc
Confidence 3 2222344455444444 5789999999883 3688899999965
No 34
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=99.73 E-value=2.3e-17 Score=166.62 Aligned_cols=163 Identities=23% Similarity=0.306 Sum_probs=121.8
Q ss_pred cEEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCCcCC--
Q 018241 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG-- 134 (359)
Q Consensus 57 ~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~~~-- 134 (359)
.+||++|.||+|||||||+|| +....++|+||+|.+...|.+.+.+ .++.++|+||...-
T Consensus 4 ~~valvGNPNvGKTtlFN~LT-G~~q~VgNwpGvTVEkkeg~~~~~~-----------------~~i~ivDLPG~YSL~~ 65 (653)
T COG0370 4 LTVALVGNPNVGKTTLFNALT-GANQKVGNWPGVTVEKKEGKLKYKG-----------------HEIEIVDLPGTYSLTA 65 (653)
T ss_pred ceEEEecCCCccHHHHHHHHh-ccCceecCCCCeeEEEEEEEEEecC-----------------ceEEEEeCCCcCCCCC
Confidence 579999999999999999999 8889999999999999999998874 56999999999754
Q ss_pred CCcCcchhhhHhhHHHhcccceEEeecCC--------------CccEEEeCCcccCCcchHHHHhhhhhccHHHHHHHHH
Q 018241 135 ASQGEGLGNKFLSHIREVDSILQVVRCFE--------------DNDIVHVNGKVDPKSDVDVINLELVFSDLDQIEKRME 200 (359)
Q Consensus 135 ~~~~~~~~~~~l~~i~~aD~il~Vvd~~~--------------~~~v~~v~nk~d~~~~~~~i~~el~~~d~~~l~~~~~ 200 (359)
.+.++.+.+.|+.. .+.|+++.|+|++. +.+++.+.|++|-.+ ++-+.-|.+.+++.+.
T Consensus 66 ~S~DE~Var~~ll~-~~~D~ivnVvDAtnLeRnLyltlQLlE~g~p~ilaLNm~D~A~------~~Gi~ID~~~L~~~LG 138 (653)
T COG0370 66 YSEDEKVARDFLLE-GKPDLIVNVVDATNLERNLYLTLQLLELGIPMILALNMIDEAK------KRGIRIDIEKLSKLLG 138 (653)
T ss_pred CCchHHHHHHHHhc-CCCCEEEEEcccchHHHHHHHHHHHHHcCCCeEEEeccHhhHH------hcCCcccHHHHHHHhC
Confidence 34466676777653 56799999999988 457899999998543 2223445555555442
Q ss_pred HHhhhccccccchhhHHHHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHH
Q 018241 201 KLKKGKAKDSQSKLKEDAEKAALEKIQQALMDGKPARSVTLNDFERDSI 249 (359)
Q Consensus 201 ~~~~~~~~~~~Sa~~~~~~~~ll~~i~~~L~~~~~~~~~~~t~~~~e~i 249 (359)
. +-.+++|+.+.+++++++++.+..+.+...+..+++.+..+.+
T Consensus 139 ----v-PVv~tvA~~g~G~~~l~~~i~~~~~~~~~~~~~~y~~~ie~~i 182 (653)
T COG0370 139 ----V-PVVPTVAKRGEGLEELKRAIIELAESKTTPREVDYGEEIEEEI 182 (653)
T ss_pred ----C-CEEEEEeecCCCHHHHHHHHHHhccccccccccccchHHHHHH
Confidence 1 1146788999999999999988887655422224444433333
No 35
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.71 E-value=4.9e-17 Score=141.16 Aligned_cols=142 Identities=41% Similarity=0.663 Sum_probs=99.0
Q ss_pred EEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCCcCCCCcCcc
Q 018241 61 IVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGASQGEG 140 (359)
Q Consensus 61 ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~~~~~~~~~ 140 (359)
|+|.+|||||||+|+|++... .+++++++|++++.+.+.+++ +.++.+|||||+.+.....+.
T Consensus 1 iiG~~~~GKStll~~l~~~~~-~~~~~~~~t~~~~~~~~~~~~----------------~~~~~i~DtpG~~~~~~~~~~ 63 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKP-KVANYPFTTLEPNLGVVEVPD----------------GARIQVADIPGLIEGASEGRG 63 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCc-cccCCCceeecCcceEEEcCC----------------CCeEEEEeccccchhhhcCCC
Confidence 589999999999999996554 678999999999988877662 256999999999765555556
Q ss_pred hhhhHhhHHHhcccceEEeecCCC---------------------------------ccEEEeCCcccCCcchHHHHhhh
Q 018241 141 LGNKFLSHIREVDSILQVVRCFED---------------------------------NDIVHVNGKVDPKSDVDVINLEL 187 (359)
Q Consensus 141 ~~~~~l~~i~~aD~il~Vvd~~~~---------------------------------~~v~~v~nk~d~~~~~~~i~~el 187 (359)
+...++..++.+|++++|+|+++. .+++.+.||+|..........+
T Consensus 64 ~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~- 142 (176)
T cd01881 64 LGNQFLAHIRRADAILHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDAEELEEEL- 142 (176)
T ss_pred ccHHHHHHHhccCEEEEEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCchhHHHHHH-
Confidence 666788889999999999998754 2466777888865432211110
Q ss_pred hhccHHHHHHHHHHHhhhccccccchhhHHHHHHHHHHHHHH
Q 018241 188 VFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQA 229 (359)
Q Consensus 188 ~~~d~~~l~~~~~~~~~~~~~~~~Sa~~~~~~~~ll~~i~~~ 229 (359)
........ ......+|++.+.++.++++.+..+
T Consensus 143 --------~~~~~~~~-~~~~~~~Sa~~~~gl~~l~~~l~~~ 175 (176)
T cd01881 143 --------VRELALEE-GAEVVPISAKTEEGLDELIRAIYEL 175 (176)
T ss_pred --------HHHHhcCC-CCCEEEEehhhhcCHHHHHHHHHhh
Confidence 00000000 0111466888888888877766544
No 36
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.71 E-value=3.5e-17 Score=133.53 Aligned_cols=88 Identities=38% Similarity=0.483 Sum_probs=73.6
Q ss_pred EEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCCcCCCCc
Q 018241 58 RAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGASQ 137 (359)
Q Consensus 58 ~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~~~~~~ 137 (359)
+|+|+|.||||||||+|+|++...+.+++.+++|+++..+.+.+. +..+.|+||||+.+....
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~~~-----------------~~~~~~vDtpG~~~~~~~ 63 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFEYN-----------------NKKFILVDTPGINDGESQ 63 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEEET-----------------TEEEEEEESSSCSSSSHH
T ss_pred CEEEECCCCCCHHHHHHHHhccccccccccccceeeeeeeeeeec-----------------eeeEEEEeCCCCcccchh
Confidence 689999999999999999997678889999999999988777775 356899999999876543
Q ss_pred Cc--chhhhHhhHHHhcccceEEeecC
Q 018241 138 GE--GLGNKFLSHIREVDSILQVVRCF 162 (359)
Q Consensus 138 ~~--~~~~~~l~~i~~aD~il~Vvd~~ 162 (359)
.. .....++..++.+|++++|+|+.
T Consensus 64 ~~~~~~~~~~~~~~~~~d~ii~vv~~~ 90 (116)
T PF01926_consen 64 DNDGKEIRKFLEQISKSDLIIYVVDAS 90 (116)
T ss_dssp HHHHHHHHHHHHHHCTESEEEEEEETT
T ss_pred hHHHHHHHHHHHHHHHCCEEEEEEECC
Confidence 22 23456888889999999999973
No 37
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.71 E-value=2.9e-17 Score=164.27 Aligned_cols=149 Identities=22% Similarity=0.277 Sum_probs=111.3
Q ss_pred hhccccCCcEEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEec
Q 018241 49 SASKISMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDI 128 (359)
Q Consensus 49 ~~~~~~~~~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDt 128 (359)
++++...+++|+++|+||||||||+|+|++...+.+++.||+|++.....+.+++ ..+.+|||
T Consensus 208 ~~~~~~~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g-----------------~~i~l~DT 270 (449)
T PRK05291 208 QGEILREGLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINLDG-----------------IPLRLIDT 270 (449)
T ss_pred HHHHhhcCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEECC-----------------eEEEEEeC
Confidence 4455556799999999999999999999977777899999999999888887753 56999999
Q ss_pred CCCcCCCCcCcch-hhhHhhHHHhcccceEEeecCCC--------------ccEEEeCCcccCCcchHHHHhhhhhccHH
Q 018241 129 AGLVKGASQGEGL-GNKFLSHIREVDSILQVVRCFED--------------NDIVHVNGKVDPKSDVDVINLELVFSDLD 193 (359)
Q Consensus 129 pG~~~~~~~~~~~-~~~~l~~i~~aD~il~Vvd~~~~--------------~~v~~v~nk~d~~~~~~~i~~el~~~d~~ 193 (359)
||+.+.....+.. ....+..++++|++++|+|+++. .+++.+.||+|........
T Consensus 271 ~G~~~~~~~ie~~gi~~~~~~~~~aD~il~VvD~s~~~s~~~~~~l~~~~~~piiiV~NK~DL~~~~~~~---------- 340 (449)
T PRK05291 271 AGIRETDDEVEKIGIERSREAIEEADLVLLVLDASEPLTEEDDEILEELKDKPVIVVLNKADLTGEIDLE---------- 340 (449)
T ss_pred CCCCCCccHHHHHHHHHHHHHHHhCCEEEEEecCCCCCChhHHHHHHhcCCCCcEEEEEhhhccccchhh----------
Confidence 9996533211111 12456788999999999999763 3678899999976432110
Q ss_pred HHHHHHHHHhhhccccccchhhHHHHHHHHHHHHHHhcC
Q 018241 194 QIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMD 232 (359)
Q Consensus 194 ~l~~~~~~~~~~~~~~~~Sa~~~~~~~~ll~~i~~~L~~ 232 (359)
. . .......+||+++.++.++++.+.+.+..
T Consensus 341 ---~----~-~~~~~i~iSAktg~GI~~L~~~L~~~l~~ 371 (449)
T PRK05291 341 ---E----E-NGKPVIRISAKTGEGIDELREAIKELAFG 371 (449)
T ss_pred ---h----c-cCCceEEEEeeCCCCHHHHHHHHHHHHhh
Confidence 0 0 00111468999999999999999988854
No 38
>KOG0410 consensus Predicted GTP binding protein [General function prediction only]
Probab=99.71 E-value=1.7e-17 Score=153.45 Aligned_cols=140 Identities=21% Similarity=0.239 Sum_probs=103.3
Q ss_pred ccccccccchhhhccCCCccchhhhhhhcCccccCCCCcc----------------hhhhh------hhhhccccCCcEE
Q 018241 2 VRTAACNYLIPALTLLPKPMESSLFTRNANLIGVLGITTT----------------SSRRR------FSSASKISMSLRA 59 (359)
Q Consensus 2 v~~a~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~------~~~~~~~~~~~~i 59 (359)
|.+|+..|..+++...+....+ .-|+.+-+.|.+.. ..+++ .+.++.....+.|
T Consensus 106 valAempy~~~rl~r~~~hl~r----~~g~~v~gsges~id~d~~rllr~kea~lrKeL~~vrrkr~~r~gr~~~s~pvi 181 (410)
T KOG0410|consen 106 VALAEMPYVGGRLERELQHLRR----QSGGQVKGSGESIIDRDIRRLLRIKEAQLRKELQRVRRKRQRRVGREGESSPVI 181 (410)
T ss_pred hhhhcCccccchHHHHHHHHHh----cCCCcccCccchHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCceE
Confidence 5689999999999986665555 12233333333221 01111 2233444456899
Q ss_pred EEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCCcCCCCcCc
Q 018241 60 GIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGASQGE 139 (359)
Q Consensus 60 ~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~~~~~~~~ 139 (359)
++|||+|+|||||+|+|| .......+..|.|.||+......|. +..+.|.||-||+...+ .
T Consensus 182 avVGYTNaGKsTLikaLT-~Aal~p~drLFATLDpT~h~a~Lps----------------g~~vlltDTvGFisdLP--~ 242 (410)
T KOG0410|consen 182 AVVGYTNAGKSTLIKALT-KAALYPNDRLFATLDPTLHSAHLPS----------------GNFVLLTDTVGFISDLP--I 242 (410)
T ss_pred EEEeecCccHHHHHHHHH-hhhcCccchhheeccchhhhccCCC----------------CcEEEEeechhhhhhCc--H
Confidence 999999999999999999 7777788999999999998888887 56799999999987665 2
Q ss_pred chhh---hHhhHHHhcccceEEeecCCC
Q 018241 140 GLGN---KFLSHIREVDSILQVVRCFED 164 (359)
Q Consensus 140 ~~~~---~~l~~i~~aD~il~Vvd~~~~ 164 (359)
++.. .++.++..||+++||+|.+++
T Consensus 243 ~LvaAF~ATLeeVaeadlllHvvDiShP 270 (410)
T KOG0410|consen 243 QLVAAFQATLEEVAEADLLLHVVDISHP 270 (410)
T ss_pred HHHHHHHHHHHHHhhcceEEEEeecCCc
Confidence 3443 457888999999999999885
No 39
>KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms]
Probab=99.69 E-value=1.5e-17 Score=149.50 Aligned_cols=224 Identities=24% Similarity=0.318 Sum_probs=154.8
Q ss_pred cEEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCCcCCCC
Q 018241 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGAS 136 (359)
Q Consensus 57 ~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~~~~~ 136 (359)
.+|+++|.|.+|||||++.|+ +...++..+-|||.-...|+..+. ++.+++.|.||+++++.
T Consensus 60 a~vg~vgFPSvGksTl~~~l~-g~~s~vasyefttl~~vpG~~~y~-----------------gaKiqlldlpgiiegak 121 (358)
T KOG1487|consen 60 ARVGFVGFPSVGKSTLLSKLT-GTFSEVAAYEFTTLTTVPGVIRYK-----------------GAKIQLLDLPGIIEGAK 121 (358)
T ss_pred eeeeEEecCccchhhhhhhhc-CCCCccccccceeEEEecceEecc-----------------ccceeeecCcchhcccc
Confidence 489999999999999999999 888889999999999999998887 46799999999999999
Q ss_pred cCcchhhhHhhHHHhcccceEEeecCCCccEEEeCCcccCCcchHHHHhhhhhccHHHHHHHHHHHhhhccccccchhhH
Q 018241 137 QGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKE 216 (359)
Q Consensus 137 ~~~~~~~~~l~~i~~aD~il~Vvd~~~~~~v~~v~nk~d~~~~~~~i~~el~~~d~~~l~~~~~~~~~~~~~~~~Sa~~~ 216 (359)
.+.|.+++..+..|.|.+|+.|+|+ ..|+.+...++.||+-..+..-.++.....+...+++++.+.
T Consensus 122 dgkgrg~qviavartcnli~~vld~------------~kp~~hk~~ie~eleg~girlnk~pp~i~~kkKdkgGInlt~- 188 (358)
T KOG1487|consen 122 DGKGRGKQVIAVARTCNLIFIVLDV------------LKPLSHKKIIEKELEGFGIRLNKQPPNIGTKKKDKGGINLTG- 188 (358)
T ss_pred cCCCCccEEEEEeecccEEEEEeec------------cCcccHHHHHHHhhhcceeeccCCCCCccccccccCceeeec-
Confidence 9999999999999999999999998 778888889999877555432222211111122224443222
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCC-----CCCHHHHHHHH-HHhhhhcCCeEEEEeCCCcccCCCCCChhHHHHHHHHHhc
Q 018241 217 DAEKAALEKIQQALMDGKPARSV-----TLNDFERDSIK-QLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDL 290 (359)
Q Consensus 217 ~~~~~ll~~i~~~L~~~~~~~~~-----~~t~~~~e~i~-~~~~l~~kp~~y~~nv~~~~~~~~~~~~~~~~i~~~~~~~ 290 (359)
-.--++.++..+.+.+...+. +-|.+ ..|. .-+.+.+-|.+|+.|+.+.-. .+++.-..+
T Consensus 189 --~~LdlD~~rsil~eyR~hsAdi~Lr~DaT~D--dLIdvVegnr~yVp~iyvLNkIdsIS--------iEELdii~~-- 254 (358)
T KOG1487|consen 189 --THLDLDLQRSILSEYRIHSADIALRFDATAD--DLIDVVEGNRIYVPCIYVLNKIDSIS--------IEELDIIYT-- 254 (358)
T ss_pred --chhhHHHHHHHHHHhhhcchheeeecCcchh--hhhhhhccCceeeeeeeeecccceee--------eeccceeee--
Confidence 001234444445444433331 22322 2223 123357889999999876422 122222111
Q ss_pred CCeEEEeeHHHHHHHcCCCHHHHHHHHHHcCCCCchHHHHHHHHHHhcCCeEEecCC
Q 018241 291 QSGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSG 347 (359)
Q Consensus 291 ~~~~i~~sa~le~~l~~l~~~~~~~~l~~~~~~~~~l~~li~~~~~~L~li~ffT~g 347 (359)
--..+|+||....++ +.++..+++.|+|.++||..
T Consensus 255 iphavpISA~~~wn~----------------------d~lL~~mweyL~LvriYtkP 289 (358)
T KOG1487|consen 255 IPHAVPISAHTGWNF----------------------DKLLEKMWEYLKLVRIYTKP 289 (358)
T ss_pred ccceeecccccccch----------------------HHHHHHHhhcchheEEecCC
Confidence 123789998765444 34778999999999999975
No 40
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=99.68 E-value=7.3e-17 Score=156.71 Aligned_cols=162 Identities=23% Similarity=0.240 Sum_probs=114.2
Q ss_pred hhhhccccCCcEEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEE
Q 018241 47 FSSASKISMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFV 126 (359)
Q Consensus 47 ~~~~~~~~~~~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lv 126 (359)
.........+++|+|+|+||||||||+|+|+....+.|++.||||+|.....+++. +.++.++
T Consensus 259 ~~~~e~lq~gl~iaIvGrPNvGKSSLlNaL~~~drsIVSpv~GTTRDaiea~v~~~-----------------G~~v~L~ 321 (531)
T KOG1191|consen 259 ADEIERLQSGLQIAIVGRPNVGKSSLLNALSREDRSIVSPVPGTTRDAIEAQVTVN-----------------GVPVRLS 321 (531)
T ss_pred hhhHHHhhcCCeEEEEcCCCCCHHHHHHHHhcCCceEeCCCCCcchhhheeEeecC-----------------CeEEEEE
Confidence 33455566789999999999999999999999999999999999999999999876 5789999
Q ss_pred ecCCCcCCCCc-Ccchh-hhHhhHHHhcccceEEeecCCC----------------------------ccEEEeCCcccC
Q 018241 127 DIAGLVKGASQ-GEGLG-NKFLSHIREVDSILQVVRCFED----------------------------NDIVHVNGKVDP 176 (359)
Q Consensus 127 DtpG~~~~~~~-~~~~~-~~~l~~i~~aD~il~Vvd~~~~----------------------------~~v~~v~nk~d~ 176 (359)
||+|+.+.... -+.++ ++....++.||++++|+|+-.. .+++.+.||.|.
T Consensus 322 DTAGiRe~~~~~iE~~gI~rA~k~~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~ 401 (531)
T KOG1191|consen 322 DTAGIREESNDGIEALGIERARKRIERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDL 401 (531)
T ss_pred eccccccccCChhHHHhHHHHHHHHhhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccccccceEEEechhhc
Confidence 99999873322 23333 4566778999999999999220 235677888887
Q ss_pred CcchHHHHhhhhhccHHHHHH-HHHHHhhhccccccchhhHHHHHHHHHHHHHHhcC
Q 018241 177 KSDVDVINLELVFSDLDQIEK-RMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMD 232 (359)
Q Consensus 177 ~~~~~~i~~el~~~d~~~l~~-~~~~~~~~~~~~~~Sa~~~~~~~~ll~~i~~~L~~ 232 (359)
..++..... ...-..+. -...+... .-+|++.+++...|.+.+.+.+..
T Consensus 402 ~s~~~~~~~----~~~~~~~~~~~~~~~i~---~~vs~~tkeg~~~L~~all~~~~~ 451 (531)
T KOG1191|consen 402 VSKIPEMTK----IPVVYPSAEGRSVFPIV---VEVSCTTKEGCERLSTALLNIVER 451 (531)
T ss_pred cCccccccC----CceeccccccCcccceE---EEeeechhhhHHHHHHHHHHHHHH
Confidence 765433211 11111111 00011111 125778888888888888887754
No 41
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.67 E-value=2e-16 Score=157.57 Aligned_cols=144 Identities=26% Similarity=0.269 Sum_probs=105.8
Q ss_pred EEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCCcCCCCc
Q 018241 58 RAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGASQ 137 (359)
Q Consensus 58 ~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~~~~~~ 137 (359)
+|+|||+||||||||||+|++...+.+++.|++|++...+.+.+.+ ..+.+|||||+......
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~~~~-----------------~~~~liDTpG~~~~~~~ 63 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEWGG-----------------REFILIDTGGIEEDDDG 63 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCcceecCCCCcccCceEEEEEECC-----------------eEEEEEECCCCCCcchh
Confidence 5899999999999999999987878899999999999988887764 46999999998543221
Q ss_pred -CcchhhhHhhHHHhcccceEEeecCCC----------------ccEEEeCCcccCCcchHHHHhhhhhccHHHHHHHHH
Q 018241 138 -GEGLGNKFLSHIREVDSILQVVRCFED----------------NDIVHVNGKVDPKSDVDVINLELVFSDLDQIEKRME 200 (359)
Q Consensus 138 -~~~~~~~~l~~i~~aD~il~Vvd~~~~----------------~~v~~v~nk~d~~~~~~~i~~el~~~d~~~l~~~~~ 200 (359)
.+.+...+..++++||++++|+|+.+. .+++.+.||+|........ .+ ..
T Consensus 64 ~~~~~~~~~~~~~~~ad~vl~vvD~~~~~~~~d~~i~~~l~~~~~piilVvNK~D~~~~~~~~-~~------------~~ 130 (429)
T TIGR03594 64 LDKQIREQAEIAIEEADVILFVVDGREGLTPEDEEIAKWLRKSGKPVILVANKIDGKKEDAVA-AE------------FY 130 (429)
T ss_pred HHHHHHHHHHHHHhhCCEEEEEEeCCCCCCHHHHHHHHHHHHhCCCEEEEEECccCCcccccH-HH------------HH
Confidence 233445667788999999999998762 3688999999966432111 00 00
Q ss_pred HHhhhccccccchhhHHHHHHHHHHHHHHhcC
Q 018241 201 KLKKGKAKDSQSKLKEDAEKAALEKIQQALMD 232 (359)
Q Consensus 201 ~~~~~~~~~~~Sa~~~~~~~~ll~~i~~~L~~ 232 (359)
.+. ......+||+.+.++.++++.+.+.++.
T Consensus 131 ~lg-~~~~~~vSa~~g~gv~~ll~~i~~~l~~ 161 (429)
T TIGR03594 131 SLG-FGEPIPISAEHGRGIGDLLDAILELLPE 161 (429)
T ss_pred hcC-CCCeEEEeCCcCCChHHHHHHHHHhcCc
Confidence 000 0011467888888888888888877743
No 42
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.66 E-value=3.4e-16 Score=157.86 Aligned_cols=147 Identities=22% Similarity=0.197 Sum_probs=106.2
Q ss_pred CCcEEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCCcCC
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~~~ 134 (359)
..++|+|||.||||||||||+|++...+.+++.|++|++...+.+.+.+ .++.+|||||+...
T Consensus 37 ~~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~~~-----------------~~~~l~DT~G~~~~ 99 (472)
T PRK03003 37 PLPVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEWNG-----------------RRFTVVDTGGWEPD 99 (472)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEECC-----------------cEEEEEeCCCcCCc
Confidence 4479999999999999999999977777889999999998888777663 56999999998632
Q ss_pred CCc-CcchhhhHhhHHHhcccceEEeecCCC----------------ccEEEeCCcccCCcchHHHHhhhhhccHHHHHH
Q 018241 135 ASQ-GEGLGNKFLSHIREVDSILQVVRCFED----------------NDIVHVNGKVDPKSDVDVINLELVFSDLDQIEK 197 (359)
Q Consensus 135 ~~~-~~~~~~~~l~~i~~aD~il~Vvd~~~~----------------~~v~~v~nk~d~~~~~~~i~~el~~~d~~~l~~ 197 (359)
... .+.+...+..+++.||++++|+|+++. .+++.+.||+|........ ..
T Consensus 100 ~~~~~~~~~~~~~~~~~~aD~il~VvD~~~~~s~~~~~i~~~l~~~~~piilV~NK~Dl~~~~~~~------------~~ 167 (472)
T PRK03003 100 AKGLQASVAEQAEVAMRTADAVLFVVDATVGATATDEAVARVLRRSGKPVILAANKVDDERGEADA------------AA 167 (472)
T ss_pred chhHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECccCCccchhh------------HH
Confidence 221 122334456678999999999999863 4689999999965321100 00
Q ss_pred HHHHHhhhccccccchhhHHHHHHHHHHHHHHhcC
Q 018241 198 RMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMD 232 (359)
Q Consensus 198 ~~~~~~~~~~~~~~Sa~~~~~~~~ll~~i~~~L~~ 232 (359)
.+. .. ......+||+.+.++.++++.+.+.+++
T Consensus 168 ~~~-~g-~~~~~~iSA~~g~gi~eL~~~i~~~l~~ 200 (472)
T PRK03003 168 LWS-LG-LGEPHPVSALHGRGVGDLLDAVLAALPE 200 (472)
T ss_pred HHh-cC-CCCeEEEEcCCCCCcHHHHHHHHhhccc
Confidence 000 00 0011468899999999998888877754
No 43
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.66 E-value=1.5e-15 Score=153.05 Aligned_cols=153 Identities=20% Similarity=0.269 Sum_probs=108.8
Q ss_pred CCcEEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCCcCC
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~~~ 134 (359)
..++|+++|.||||||||+|+|++.....+++.|++|+++....+.+.+ .++.||||||+.+.
T Consensus 210 ~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~~~~~~-----------------~~~~l~DTaG~~~~ 272 (472)
T PRK03003 210 GPRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLIELGG-----------------KTWRFVDTAGLRRR 272 (472)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCcceEEEEECC-----------------EEEEEEECCCcccc
Confidence 4589999999999999999999987777889999999999888877763 56899999999654
Q ss_pred CCcCcch--h--hhHhhHHHhcccceEEeecCCC----------------ccEEEeCCcccCCcchH--HHHhhhhhccH
Q 018241 135 ASQGEGL--G--NKFLSHIREVDSILQVVRCFED----------------NDIVHVNGKVDPKSDVD--VINLELVFSDL 192 (359)
Q Consensus 135 ~~~~~~~--~--~~~l~~i~~aD~il~Vvd~~~~----------------~~v~~v~nk~d~~~~~~--~i~~el~~~d~ 192 (359)
.....+. . .....++++||++++|+|+++. .+++.+.||+|...... .+..
T Consensus 273 ~~~~~~~e~~~~~~~~~~i~~ad~vilV~Da~~~~s~~~~~~~~~~~~~~~piIiV~NK~Dl~~~~~~~~~~~------- 345 (472)
T PRK03003 273 VKQASGHEYYASLRTHAAIEAAEVAVVLIDASEPISEQDQRVLSMVIEAGRALVLAFNKWDLVDEDRRYYLER------- 345 (472)
T ss_pred ccccchHHHHHHHHHHHHHhcCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECcccCChhHHHHHHH-------
Confidence 3321111 1 1123457899999999998763 35889999999764221 1111
Q ss_pred HHHHHHHHHHhhhccccccchhhHHHHHHHHHHHHHHhcCC
Q 018241 193 DQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMDG 233 (359)
Q Consensus 193 ~~l~~~~~~~~~~~~~~~~Sa~~~~~~~~ll~~i~~~L~~~ 233 (359)
.+...+... .......+||+.+.++.++++.+.+.++..
T Consensus 346 -~i~~~l~~~-~~~~~~~~SAk~g~gv~~lf~~i~~~~~~~ 384 (472)
T PRK03003 346 -EIDRELAQV-PWAPRVNISAKTGRAVDKLVPALETALESW 384 (472)
T ss_pred -HHHHhcccC-CCCCEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 111111110 001114689999999999999999988653
No 44
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=99.65 E-value=5.8e-16 Score=144.98 Aligned_cols=227 Identities=19% Similarity=0.183 Sum_probs=128.4
Q ss_pred EEEEEecCCCChhHHHHHHHhccccc--cCC-CC--------------ceeccceeEEEEeCCCccchhccccccccccC
Q 018241 58 RAGIVGLPNVGKSTLFNAVVENGKAQ--AAN-FP--------------FCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVP 120 (359)
Q Consensus 58 ~i~ivG~pn~GKSTL~n~L~~~~~~~--~~~-~p--------------~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~ 120 (359)
+|+|+|++|+|||||+|+|++..... .+. .. +.|.......+.+ .+
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~-----------------~~ 63 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEW-----------------KG 63 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEE-----------------CC
Confidence 58999999999999999998433221 000 01 1122222222222 24
Q ss_pred ceEEEEecCCCcCCCCcCcchhhhHhhHHHhcccceEEeecCCCccEEEeCCcccCCcchHHHHhhhhhccHHHHHHHHH
Q 018241 121 ASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPKSDVDVINLELVFSDLDQIEKRME 200 (359)
Q Consensus 121 ~~i~lvDtpG~~~~~~~~~~~~~~~l~~i~~aD~il~Vvd~~~~~~v~~v~nk~d~~~~~~~i~~el~~~d~~~l~~~~~ 200 (359)
.++.+|||||..++. ......++.+|++++|+|+..... . .... .+..+.....+.-
T Consensus 64 ~~i~liDtPG~~~f~-------~~~~~~l~~aD~~i~Vvd~~~g~~------------~--~~~~--~~~~~~~~~~p~i 120 (268)
T cd04170 64 HKINLIDTPGYADFV-------GETRAALRAADAALVVVSAQSGVE------------V--GTEK--LWEFADEAGIPRI 120 (268)
T ss_pred EEEEEEECcCHHHHH-------HHHHHHHHHCCEEEEEEeCCCCCC------------H--HHHH--HHHHHHHcCCCEE
Confidence 679999999986433 256778899999999999854310 0 0000 0000000000000
Q ss_pred HHhhhccccccchhhHHHHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHH-HHhhhhcCCeEEEEeC--CCcccCCCCCC
Q 018241 201 KLKKGKAKDSQSKLKEDAEKAALEKIQQALMDGKPARSVTLNDFERDSIK-QLCLLTMKPIIYVANV--AESDLADPGSN 277 (359)
Q Consensus 201 ~~~~~~~~~~~Sa~~~~~~~~ll~~i~~~L~~~~~~~~~~~t~~~~e~i~-~~~~l~~kp~~y~~nv--~~~~~~~~~~~ 277 (359)
.+.++.+ ..+....+.++.+.+.+ +.+..+..++..+.+.++ -+..+..+.+.|--+. ...+++ .
T Consensus 121 ivvNK~D------~~~~~~~~~~~~l~~~~--~~~~~~~~ip~~~~~~~~~~vd~~~~~~~~~~~~~~~~~~~~p----~ 188 (268)
T cd04170 121 IFINKMD------RERADFDKTLAALQEAF--GRPVVPLQLPIGEGDDFKGVVDLLTEKAYIYSPGAPSEEIEIP----E 188 (268)
T ss_pred EEEECCc------cCCCCHHHHHHHHHHHh--CCCeEEEEecccCCCceeEEEEcccCEEEEccCCCcceeccCC----H
Confidence 0111111 11123445666676666 333333333333233333 2334445444442111 111233 3
Q ss_pred hhHHHHHHHHHhcCCeEEEeeHHHHHHHcCCCHHHHHHHHHHcCCCCchHHHHHHHHHHhcCCeEEecCC
Q 018241 278 PHVNEVMNLASDLQSGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSG 347 (359)
Q Consensus 278 ~~~~~i~~~~~~~~~~~i~~sa~le~~l~~l~~~~~~~~l~~~~~~~~~l~~li~~~~~~L~li~ffT~g 347 (359)
...++++++... +-+.+++.|++.+++||++..++...+.+.++.++..-.++|||-..
T Consensus 189 ~~~~~~~~~~~~-----------l~e~~a~~dd~l~e~yl~~~~~~~~~l~~~l~~~~~~~~~~pv~~gS 247 (268)
T cd04170 189 ELKEEVAEAREE-----------LLEAVAETDDELMEKYLEGGELTEEELHAGLRRALRAGLLVPVLCGS 247 (268)
T ss_pred HHHHHHHHHHHH-----------HHHHHhhCCHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCEEEEEEee
Confidence 455566665543 66779999999999999999999999999999999999999999865
No 45
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.65 E-value=1e-15 Score=137.14 Aligned_cols=144 Identities=26% Similarity=0.334 Sum_probs=99.7
Q ss_pred cCCcEEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCCcC
Q 018241 54 SMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVK 133 (359)
Q Consensus 54 ~~~~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~~ 133 (359)
+..++|+|+|.+|||||||+|++++. ...+.+.+++|.++..+.+.+++ ..++.+|||||+.+
T Consensus 39 ~~~~~I~iiG~~g~GKStLl~~l~~~-~~~~~~~~~~t~~~~~~~~~~~~----------------~~~~~i~Dt~G~~~ 101 (204)
T cd01878 39 SGIPTVALVGYTNAGKSTLFNALTGA-DVYAEDQLFATLDPTTRRLRLPD----------------GREVLLTDTVGFIR 101 (204)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHhcc-hhccCCccceeccceeEEEEecC----------------CceEEEeCCCcccc
Confidence 44589999999999999999999954 44566778899888887776654 23699999999965
Q ss_pred CCCcCc-chhhhHhhHHHhcccceEEeecCCC--------------------ccEEEeCCcccCCcchHHHHhhhhhccH
Q 018241 134 GASQGE-GLGNKFLSHIREVDSILQVVRCFED--------------------NDIVHVNGKVDPKSDVDVINLELVFSDL 192 (359)
Q Consensus 134 ~~~~~~-~~~~~~l~~i~~aD~il~Vvd~~~~--------------------~~v~~v~nk~d~~~~~~~i~~el~~~d~ 192 (359)
..+... ......+..+.++|++++|+|+++. .+++.+.||+|........
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~~~~~viiV~NK~Dl~~~~~~~--------- 172 (204)
T cd01878 102 DLPHQLVEAFRSTLEEVAEADLLLHVVDASDPDYEEQIETVEKVLKELGAEDIPMILVLNKIDLLDDEELE--------- 172 (204)
T ss_pred CCCHHHHHHHHHHHHHHhcCCeEEEEEECCCCChhhHHHHHHHHHHHcCcCCCCEEEEEEccccCChHHHH---------
Confidence 433210 0112234456789999999998752 3578899999976543211
Q ss_pred HHHHHHHHHHhhh-ccccccchhhHHHHHHHHHHHHHHh
Q 018241 193 DQIEKRMEKLKKG-KAKDSQSKLKEDAEKAALEKIQQAL 230 (359)
Q Consensus 193 ~~l~~~~~~~~~~-~~~~~~Sa~~~~~~~~ll~~i~~~L 230 (359)
. . .... .....+||+.+.++.++++.+..+|
T Consensus 173 ----~-~--~~~~~~~~~~~Sa~~~~gi~~l~~~L~~~~ 204 (204)
T cd01878 173 ----E-R--LEAGRPDAVFISAKTGEGLDELLEAIEELL 204 (204)
T ss_pred ----H-H--hhcCCCceEEEEcCCCCCHHHHHHHHHhhC
Confidence 0 0 0011 1114678999999999988887654
No 46
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.65 E-value=1.9e-15 Score=130.58 Aligned_cols=144 Identities=25% Similarity=0.303 Sum_probs=95.4
Q ss_pred cEEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCCcCCCC
Q 018241 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGAS 136 (359)
Q Consensus 57 ~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~~~~~ 136 (359)
++|+++|+||||||||+|+|++. ...++++|++|.++..+..... +.++.+|||||+.+...
T Consensus 1 ~~i~~~G~~~~GKssli~~l~~~-~~~~~~~~~~t~~~~~~~~~~~-----------------~~~~~i~Dt~G~~~~~~ 62 (168)
T cd01897 1 PTLVIAGYPNVGKSSLVNKLTRA-KPEVAPYPFTTKSLFVGHFDYK-----------------YLRWQVIDTPGLLDRPL 62 (168)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcC-CCccCCCCCcccceeEEEEccC-----------------ceEEEEEECCCcCCccc
Confidence 47999999999999999999954 4456778999988888776554 35799999999864322
Q ss_pred cCc-chhhhHhhHH-HhcccceEEeecCCC---------------------ccEEEeCCcccCCcchHHHHhhhhhccHH
Q 018241 137 QGE-GLGNKFLSHI-REVDSILQVVRCFED---------------------NDIVHVNGKVDPKSDVDVINLELVFSDLD 193 (359)
Q Consensus 137 ~~~-~~~~~~l~~i-~~aD~il~Vvd~~~~---------------------~~v~~v~nk~d~~~~~~~i~~el~~~d~~ 193 (359)
... .+.......+ ..+|++++|+|+++. .+++.+.||.|....... ..
T Consensus 63 ~~~~~~~~~~~~~~~~~~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~-~~-------- 133 (168)
T cd01897 63 EERNTIEMQAITALAHLRAAVLFLFDPSETCGYSLEEQLSLFEEIKPLFKNKPVIVVLNKIDLLTFEDL-SE-------- 133 (168)
T ss_pred cCCchHHHHHHHHHHhccCcEEEEEeCCcccccchHHHHHHHHHHHhhcCcCCeEEEEEccccCchhhH-HH--------
Confidence 111 1111122222 236899999998742 357888899997643221 10
Q ss_pred HHHHHHHHHhhhccccccchhhHHHHHHHHHHHHHHh
Q 018241 194 QIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQAL 230 (359)
Q Consensus 194 ~l~~~~~~~~~~~~~~~~Sa~~~~~~~~ll~~i~~~L 230 (359)
..+ ..... ......+||+++.++.++++.+.+.|
T Consensus 134 -~~~-~~~~~-~~~~~~~Sa~~~~gi~~l~~~l~~~~ 167 (168)
T cd01897 134 -IEE-EEELE-GEEVLKISTLTEEGVDEVKNKACELL 167 (168)
T ss_pred -HHH-hhhhc-cCceEEEEecccCCHHHHHHHHHHHh
Confidence 011 11111 11114679999999999999888765
No 47
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.64 E-value=2.1e-15 Score=150.37 Aligned_cols=155 Identities=22% Similarity=0.246 Sum_probs=110.4
Q ss_pred CCcEEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCCcCC
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~~~ 134 (359)
..++|+++|.||+|||||+|+|++.....+++.|+||+++....+...+ ..+.+|||||+.+.
T Consensus 171 ~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~-----------------~~~~liDT~G~~~~ 233 (429)
T TIGR03594 171 GPIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSIDIPFERNG-----------------KKYLLIDTAGIRRK 233 (429)
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCceECcEeEEEEECC-----------------cEEEEEECCCcccc
Confidence 4589999999999999999999988878889999999999888776653 46999999999766
Q ss_pred CCcCcchh----hhHhhHHHhcccceEEeecCCC----------------ccEEEeCCcccCCcchHHHHhhhhhccHHH
Q 018241 135 ASQGEGLG----NKFLSHIREVDSILQVVRCFED----------------NDIVHVNGKVDPKSDVDVINLELVFSDLDQ 194 (359)
Q Consensus 135 ~~~~~~~~----~~~l~~i~~aD~il~Vvd~~~~----------------~~v~~v~nk~d~~~~~~~i~~el~~~d~~~ 194 (359)
......+. .+.+.+++.||++++|+|+++. .+++.+.||+|.+.+...... + ...
T Consensus 234 ~~~~~~~e~~~~~~~~~~~~~ad~~ilV~D~~~~~~~~~~~~~~~~~~~~~~iiiv~NK~Dl~~~~~~~~~-~----~~~ 308 (429)
T TIGR03594 234 GKVTEGVEKYSVLRTLKAIERADVVLLVLDATEGITEQDLRIAGLILEAGKALVIVVNKWDLVKDEKTREE-F----KKE 308 (429)
T ss_pred ccchhhHHHHHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHHcCCcEEEEEECcccCCCHHHHHH-H----HHH
Confidence 54322221 2346678999999999999873 368899999997732211111 0 011
Q ss_pred HHHHHHHHhhhccccccchhhHHHHHHHHHHHHHHhcC
Q 018241 195 IEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMD 232 (359)
Q Consensus 195 l~~~~~~~~~~~~~~~~Sa~~~~~~~~ll~~i~~~L~~ 232 (359)
+...+..+. ......+||+.+.++.++++.+.+.+..
T Consensus 309 ~~~~~~~~~-~~~vi~~SA~~g~~v~~l~~~i~~~~~~ 345 (429)
T TIGR03594 309 LRRKLPFLD-FAPIVFISALTGQGVDKLLDAIDEVYEN 345 (429)
T ss_pred HHHhcccCC-CCceEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 111111110 0111567999999999999998887753
No 48
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.63 E-value=1.4e-15 Score=129.07 Aligned_cols=141 Identities=24% Similarity=0.273 Sum_probs=101.5
Q ss_pred CcEEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCCcCCC
Q 018241 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA 135 (359)
Q Consensus 56 ~~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~~~~ 135 (359)
+++|+++|.+|+|||||+|+|++...+.+++.|++|.+...+.+... +..+.+|||||+.+..
T Consensus 1 ~~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~i~DtpG~~~~~ 63 (157)
T cd04164 1 GIKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDIG-----------------GIPVRLIDTAGIRETE 63 (157)
T ss_pred CcEEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEeC-----------------CEEEEEEECCCcCCCc
Confidence 36899999999999999999998777778889999988777666554 2468999999997554
Q ss_pred Cc-CcchhhhHhhHHHhcccceEEeecCC--------------CccEEEeCCcccCCcchHHHHhhhhhccHHHHHHHHH
Q 018241 136 SQ-GEGLGNKFLSHIREVDSILQVVRCFE--------------DNDIVHVNGKVDPKSDVDVINLELVFSDLDQIEKRME 200 (359)
Q Consensus 136 ~~-~~~~~~~~l~~i~~aD~il~Vvd~~~--------------~~~v~~v~nk~d~~~~~~~i~~el~~~d~~~l~~~~~ 200 (359)
.. .....+.....+..+|++++|+|+++ ..+++.+.||+|....... .
T Consensus 64 ~~~~~~~~~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~vi~v~nK~D~~~~~~~----------------~- 126 (157)
T cd04164 64 DEIEKIGIERAREAIEEADLVLFVIDASRGLDEEDLEILELPADKPIIVVLNKSDLLPDSEL----------------L- 126 (157)
T ss_pred chHHHHHHHHHHHHHhhCCEEEEEEECCCCCCHHHHHHHHhhcCCCEEEEEEchhcCCcccc----------------c-
Confidence 32 11112345567789999999999985 2457889999997632211 0
Q ss_pred HHhhhccccccchhhHHHHHHHHHHHHHHh
Q 018241 201 KLKKGKAKDSQSKLKEDAEKAALEKIQQAL 230 (359)
Q Consensus 201 ~~~~~~~~~~~Sa~~~~~~~~ll~~i~~~L 230 (359)
..........+||+++.++.++++.+.+++
T Consensus 127 ~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~ 156 (157)
T cd04164 127 SLLAGKPIIAISAKTGEGLDELKEALLELA 156 (157)
T ss_pred cccCCCceEEEECCCCCCHHHHHHHHHHhh
Confidence 000001114678899889999988887654
No 49
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.63 E-value=2.9e-15 Score=149.62 Aligned_cols=154 Identities=23% Similarity=0.279 Sum_probs=110.0
Q ss_pred CCcEEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCCcCC
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~~~ 134 (359)
..++|+++|+||+|||||+|+|++.....+++.|++|++.....+... +..+.++||||+.+.
T Consensus 172 ~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~gtt~~~~~~~~~~~-----------------~~~~~lvDT~G~~~~ 234 (435)
T PRK00093 172 EPIKIAIIGRPNVGKSSLINALLGEERVIVSDIAGTTRDSIDTPFERD-----------------GQKYTLIDTAGIRRK 234 (435)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCceeecCCCCceEEEEEEEEEEC-----------------CeeEEEEECCCCCCC
Confidence 468999999999999999999998888889999999998887766654 346999999999766
Q ss_pred CCcCcchh----hhHhhHHHhcccceEEeecCCC----------------ccEEEeCCcccCCcchHHHHhhhhhccHHH
Q 018241 135 ASQGEGLG----NKFLSHIREVDSILQVVRCFED----------------NDIVHVNGKVDPKSDVDVINLELVFSDLDQ 194 (359)
Q Consensus 135 ~~~~~~~~----~~~l~~i~~aD~il~Vvd~~~~----------------~~v~~v~nk~d~~~~~~~i~~el~~~d~~~ 194 (359)
.+...++. ...+.+++.+|++++|+|+++. .+++.+.||+|...+.. ..++ .+.
T Consensus 235 ~~~~~~~e~~~~~~~~~~~~~ad~~ilViD~~~~~~~~~~~i~~~~~~~~~~~ivv~NK~Dl~~~~~--~~~~----~~~ 308 (435)
T PRK00093 235 GKVTEGVEKYSVIRTLKAIERADVVLLVIDATEGITEQDLRIAGLALEAGRALVIVVNKWDLVDEKT--MEEF----KKE 308 (435)
T ss_pred cchhhHHHHHHHHHHHHHHHHCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCcEEEEEECccCCCHHH--HHHH----HHH
Confidence 54332222 2446788999999999999873 35788999999773211 1110 011
Q ss_pred HHHHHHHHhhhccccccchhhHHHHHHHHHHHHHHhcC
Q 018241 195 IEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMD 232 (359)
Q Consensus 195 l~~~~~~~~~~~~~~~~Sa~~~~~~~~ll~~i~~~L~~ 232 (359)
+...+.... ......+||+.+.++.++++.+.+....
T Consensus 309 ~~~~l~~~~-~~~i~~~SA~~~~gv~~l~~~i~~~~~~ 345 (435)
T PRK00093 309 LRRRLPFLD-YAPIVFISALTGQGVDKLLEAIDEAYEN 345 (435)
T ss_pred HHHhccccc-CCCEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 111111110 1111567999999999999988877753
No 50
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.63 E-value=1.2e-15 Score=160.85 Aligned_cols=146 Identities=19% Similarity=0.154 Sum_probs=107.6
Q ss_pred CcEEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCCcCCC
Q 018241 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA 135 (359)
Q Consensus 56 ~~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~~~~ 135 (359)
.++|+|+|+||||||||||+|++...+.+++.||+|++...+..... +..+.+|||||+....
T Consensus 275 ~~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~~pGvT~d~~~~~~~~~-----------------~~~~~liDT~G~~~~~ 337 (712)
T PRK09518 275 VGVVAIVGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVSYDAEWA-----------------GTDFKLVDTGGWEADV 337 (712)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCceeecCCCCeeEEEEEEEEEEC-----------------CEEEEEEeCCCcCCCC
Confidence 46899999999999999999998777889999999999888777665 3569999999986432
Q ss_pred Cc-CcchhhhHhhHHHhcccceEEeecCCC----------------ccEEEeCCcccCCcchHHHHhhhhhccHHHHHHH
Q 018241 136 SQ-GEGLGNKFLSHIREVDSILQVVRCFED----------------NDIVHVNGKVDPKSDVDVINLELVFSDLDQIEKR 198 (359)
Q Consensus 136 ~~-~~~~~~~~l~~i~~aD~il~Vvd~~~~----------------~~v~~v~nk~d~~~~~~~i~~el~~~d~~~l~~~ 198 (359)
.. ...+.+.+..+++.||++++|+|+.+. .+++.+.||+|........ ...
T Consensus 338 ~~~~~~~~~~~~~~~~~aD~iL~VvDa~~~~~~~d~~i~~~Lr~~~~pvIlV~NK~D~~~~~~~~------------~~~ 405 (712)
T PRK09518 338 EGIDSAIASQAQIAVSLADAVVFVVDGQVGLTSTDERIVRMLRRAGKPVVLAVNKIDDQASEYDA------------AEF 405 (712)
T ss_pred ccHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEEEEEECcccccchhhH------------HHH
Confidence 21 222345556778999999999999762 3688999999965321110 000
Q ss_pred HHHHhhhccccccchhhHHHHHHHHHHHHHHhcC
Q 018241 199 MEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMD 232 (359)
Q Consensus 199 ~~~~~~~~~~~~~Sa~~~~~~~~ll~~i~~~L~~ 232 (359)
+. .. .....++||+.+.++.++++.+.+.++.
T Consensus 406 ~~-lg-~~~~~~iSA~~g~GI~eLl~~i~~~l~~ 437 (712)
T PRK09518 406 WK-LG-LGEPYPISAMHGRGVGDLLDEALDSLKV 437 (712)
T ss_pred HH-cC-CCCeEEEECCCCCCchHHHHHHHHhccc
Confidence 00 00 0011468999999999999999988865
No 51
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.62 E-value=1.9e-15 Score=150.95 Aligned_cols=141 Identities=26% Similarity=0.228 Sum_probs=100.8
Q ss_pred cEEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCCcCCCC
Q 018241 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGAS 136 (359)
Q Consensus 57 ~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~~~~~ 136 (359)
++|+|||.||||||||+|+|++...+.+++.|++|++...+.+.+.+ .++.+|||||+.....
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~~~-----------------~~~~liDT~G~~~~~~ 64 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEWLG-----------------REFILIDTGGIEPDDD 64 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEECC-----------------cEEEEEECCCCCCcch
Confidence 58999999999999999999987777889999999999988887763 5699999999976222
Q ss_pred -cCcchhhhHhhHHHhcccceEEeecCCC----------------ccEEEeCCcccCCcchHHHHhhhhhccHHHHHHHH
Q 018241 137 -QGEGLGNKFLSHIREVDSILQVVRCFED----------------NDIVHVNGKVDPKSDVDVINLELVFSDLDQIEKRM 199 (359)
Q Consensus 137 -~~~~~~~~~l~~i~~aD~il~Vvd~~~~----------------~~v~~v~nk~d~~~~~~~i~~el~~~d~~~l~~~~ 199 (359)
....+...+..+++.+|++++|+|+.+. .+++.+.||+|........ .++ .
T Consensus 65 ~~~~~~~~~~~~~~~~ad~il~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~D~~~~~~~~-~~~-----------~ 132 (435)
T PRK00093 65 GFEKQIREQAELAIEEADVILFVVDGRAGLTPADEEIAKILRKSNKPVILVVNKVDGPDEEADA-YEF-----------Y 132 (435)
T ss_pred hHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCcEEEEEECccCccchhhH-HHH-----------H
Confidence 1122334566788999999999999762 3688999999954311111 100 0
Q ss_pred HHHhhhccccccchhhHHHHHHHHHHHHH
Q 018241 200 EKLKKGKAKDSQSKLKEDAEKAALEKIQQ 228 (359)
Q Consensus 200 ~~~~~~~~~~~~Sa~~~~~~~~ll~~i~~ 228 (359)
.+. ......+||+.+.++.++++.+.+
T Consensus 133 -~lg-~~~~~~iSa~~g~gv~~l~~~I~~ 159 (435)
T PRK00093 133 -SLG-LGEPYPISAEHGRGIGDLLDAILE 159 (435)
T ss_pred -hcC-CCCCEEEEeeCCCCHHHHHHHHHh
Confidence 000 001135677777777777777665
No 52
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.62 E-value=5.6e-15 Score=155.82 Aligned_cols=147 Identities=20% Similarity=0.280 Sum_probs=103.7
Q ss_pred CcEEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCCcCCC
Q 018241 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA 135 (359)
Q Consensus 56 ~~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~~~~ 135 (359)
..+|+++|+||||||||||+|+| ....++++||+|.+...+.+..++ .++.++||||+.+..
T Consensus 3 ~~~IaLvG~pNvGKSTLfN~Ltg-~~~~vgn~pGvTve~k~g~~~~~~-----------------~~i~lvDtPG~ysl~ 64 (772)
T PRK09554 3 KLTIGLIGNPNSGKTTLFNQLTG-ARQRVGNWAGVTVERKEGQFSTTD-----------------HQVTLVDLPGTYSLT 64 (772)
T ss_pred ceEEEEECCCCCCHHHHHHHHhC-CCCccCCCCCceEeeEEEEEEcCc-----------------eEEEEEECCCccccc
Confidence 46899999999999999999994 456899999999999999887653 569999999997654
Q ss_pred Cc--CcchhhhHh-hH--HHhcccceEEeecCC--------------CccEEEeCCcccCCcchHHHHhhhhhccHHHHH
Q 018241 136 SQ--GEGLGNKFL-SH--IREVDSILQVVRCFE--------------DNDIVHVNGKVDPKSDVDVINLELVFSDLDQIE 196 (359)
Q Consensus 136 ~~--~~~~~~~~l-~~--i~~aD~il~Vvd~~~--------------~~~v~~v~nk~d~~~~~~~i~~el~~~d~~~l~ 196 (359)
.. ...+.++.. .. ..++|++++|+|+++ +.+++.+.||+|..+.... ..+.+.++
T Consensus 65 ~~~~~~s~~E~i~~~~l~~~~aD~vI~VvDat~ler~l~l~~ql~e~giPvIvVlNK~Dl~~~~~i------~id~~~L~ 138 (772)
T PRK09554 65 TISSQTSLDEQIACHYILSGDADLLINVVDASNLERNLYLTLQLLELGIPCIVALNMLDIAEKQNI------RIDIDALS 138 (772)
T ss_pred cccccccHHHHHHHHHHhccCCCEEEEEecCCcchhhHHHHHHHHHcCCCEEEEEEchhhhhccCc------HHHHHHHH
Confidence 31 111222221 11 247999999999987 3468999999996532111 11222222
Q ss_pred HHHHHHhhhccccccchhhHHHHHHHHHHHHHHhc
Q 018241 197 KRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALM 231 (359)
Q Consensus 197 ~~~~~~~~~~~~~~~Sa~~~~~~~~ll~~i~~~L~ 231 (359)
+.+ . .+..++|++.+.+++++.+.+.+..+
T Consensus 139 ~~L---G--~pVvpiSA~~g~GIdeL~~~I~~~~~ 168 (772)
T PRK09554 139 ARL---G--CPVIPLVSTRGRGIEALKLAIDRHQA 168 (772)
T ss_pred HHh---C--CCEEEEEeecCCCHHHHHHHHHHhhh
Confidence 222 1 11157889999999999998888765
No 53
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.61 E-value=2.2e-15 Score=129.10 Aligned_cols=143 Identities=19% Similarity=0.173 Sum_probs=90.3
Q ss_pred cEEEEEecCCCChhHHHHHHHhccccc--cCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCCcCC
Q 018241 57 LRAGIVGLPNVGKSTLFNAVVENGKAQ--AANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (359)
Q Consensus 57 ~~i~ivG~pn~GKSTL~n~L~~~~~~~--~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~~~ 134 (359)
|.|+++|.||||||||+|+|++..... ....+++|.+.....+.+++ ..++.+|||||..+.
T Consensus 1 ~~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~----------------~~~~~~~DtpG~~~~ 64 (164)
T cd04171 1 MIIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPS----------------GKRLGFIDVPGHEKF 64 (164)
T ss_pred CEEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecC----------------CcEEEEEECCChHHH
Confidence 579999999999999999999643222 22345677666555554431 246999999998432
Q ss_pred CCcCcchhhhHhhHHHhcccceEEeecCC----------------C-ccEEEeCCcccCCcchHHHHhhhhhccHHHHHH
Q 018241 135 ASQGEGLGNKFLSHIREVDSILQVVRCFE----------------D-NDIVHVNGKVDPKSDVDVINLELVFSDLDQIEK 197 (359)
Q Consensus 135 ~~~~~~~~~~~l~~i~~aD~il~Vvd~~~----------------~-~~v~~v~nk~d~~~~~~~i~~el~~~d~~~l~~ 197 (359)
.......++.+|++++|+|+.+ . .+++.+.||+|...... ... ..+.+.+
T Consensus 65 -------~~~~~~~~~~ad~ii~V~d~~~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~-~~~-----~~~~~~~ 131 (164)
T cd04171 65 -------IKNMLAGAGGIDLVLLVVAADEGIMPQTREHLEILELLGIKRGLVVLTKADLVDEDW-LEL-----VEEEIRE 131 (164)
T ss_pred -------HHHHHhhhhcCCEEEEEEECCCCccHhHHHHHHHHHHhCCCcEEEEEECccccCHHH-HHH-----HHHHHHH
Confidence 2245566789999999999875 1 25778899999754311 000 0011122
Q ss_pred HHHHHh-hhccccccchhhHHHHHHHHHHHHH
Q 018241 198 RMEKLK-KGKAKDSQSKLKEDAEKAALEKIQQ 228 (359)
Q Consensus 198 ~~~~~~-~~~~~~~~Sa~~~~~~~~ll~~i~~ 228 (359)
.+.... .......+||+.+.++.++++.+.+
T Consensus 132 ~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~ 163 (164)
T cd04171 132 LLAGTFLADAPIFPVSAVTGEGIEELKEYLDE 163 (164)
T ss_pred HHHhcCcCCCcEEEEeCCCCcCHHHHHHHHhh
Confidence 221110 0112257789999998888877653
No 54
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.61 E-value=6.8e-15 Score=126.68 Aligned_cols=152 Identities=22% Similarity=0.269 Sum_probs=99.9
Q ss_pred CcEEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCCcCCC
Q 018241 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA 135 (359)
Q Consensus 56 ~~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~~~~ 135 (359)
.++|+++|.+|+|||||+|+|++......++.|++|++.....+...+ ..+.+|||||+.+..
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~iiDtpG~~~~~ 64 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYDG-----------------KKYTLIDTAGIRRKG 64 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEECC-----------------eeEEEEECCCCcccc
Confidence 478999999999999999999977667778889999887766665543 458999999997654
Q ss_pred CcCcchh----hhHhhHHHhcccceEEeecCCC----------------ccEEEeCCcccCCcchHHHHhhhhhccHHHH
Q 018241 136 SQGEGLG----NKFLSHIREVDSILQVVRCFED----------------NDIVHVNGKVDPKSDVDVINLELVFSDLDQI 195 (359)
Q Consensus 136 ~~~~~~~----~~~l~~i~~aD~il~Vvd~~~~----------------~~v~~v~nk~d~~~~~~~i~~el~~~d~~~l 195 (359)
+....+. ...+..++.+|++++|+|+.+. .+++.+.||+|..........+. ...+
T Consensus 65 ~~~~~~e~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~----~~~~ 140 (174)
T cd01895 65 KVEEGIEKYSVLRTLKAIERADVVLLVIDATEGITEQDLRIAGLILEEGKALVIVVNKWDLVEKDSKTMKEF----KKEI 140 (174)
T ss_pred chhccHHHHHHHHHHHHHhhcCeEEEEEeCCCCcchhHHHHHHHHHhcCCCEEEEEeccccCCccHHHHHHH----HHHH
Confidence 3222221 2335567899999999998763 35788889998764321100000 0011
Q ss_pred HHHHHHHhhhccccccchhhHHHHHHHHHHHHHH
Q 018241 196 EKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQA 229 (359)
Q Consensus 196 ~~~~~~~~~~~~~~~~Sa~~~~~~~~ll~~i~~~ 229 (359)
.+.+.... ......+||+.+.++..+++.+.+.
T Consensus 141 ~~~~~~~~-~~~~~~~Sa~~~~~i~~~~~~l~~~ 173 (174)
T cd01895 141 RRKLPFLD-YAPIVFISALTGQGVDKLFDAIDEV 173 (174)
T ss_pred Hhhccccc-CCceEEEeccCCCCHHHHHHHHHHh
Confidence 11111000 0111467888888888887776543
No 55
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.61 E-value=3.7e-15 Score=157.13 Aligned_cols=150 Identities=21% Similarity=0.247 Sum_probs=108.3
Q ss_pred CcEEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCCcCCC
Q 018241 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA 135 (359)
Q Consensus 56 ~~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~~~~ 135 (359)
.++|+++|+||||||||+|+|++.....++++|+||+++....+.+++ .++.||||||+.+..
T Consensus 450 ~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d~~~~~~~~~~-----------------~~~~liDTaG~~~~~ 512 (712)
T PRK09518 450 LRRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDPVDEIVEIDG-----------------EDWLFIDTAGIKRRQ 512 (712)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCccccccCCCCCCCcCcceeEEEECC-----------------CEEEEEECCCcccCc
Confidence 489999999999999999999987777889999999999888777764 568899999997544
Q ss_pred CcCcchh----hhHhhHHHhcccceEEeecCCC----------------ccEEEeCCcccCCcchHHHHhhhhhccHHHH
Q 018241 136 SQGEGLG----NKFLSHIREVDSILQVVRCFED----------------NDIVHVNGKVDPKSDVDVINLELVFSDLDQI 195 (359)
Q Consensus 136 ~~~~~~~----~~~l~~i~~aD~il~Vvd~~~~----------------~~v~~v~nk~d~~~~~~~i~~el~~~d~~~l 195 (359)
....+.. .+...+++.||++++|+|+++. .+++.+.||+|....... +.+
T Consensus 513 ~~~~~~e~~~~~r~~~~i~~advvilViDat~~~s~~~~~i~~~~~~~~~piIiV~NK~DL~~~~~~----------~~~ 582 (712)
T PRK09518 513 HKLTGAEYYSSLRTQAAIERSELALFLFDASQPISEQDLKVMSMAVDAGRALVLVFNKWDLMDEFRR----------QRL 582 (712)
T ss_pred ccchhHHHHHHHHHHHHhhcCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEEchhcCChhHH----------HHH
Confidence 3221110 1234567899999999999773 358899999997643210 011
Q ss_pred HHHHHH-Hhh--hccccccchhhHHHHHHHHHHHHHHhcC
Q 018241 196 EKRMEK-LKK--GKAKDSQSKLKEDAEKAALEKIQQALMD 232 (359)
Q Consensus 196 ~~~~~~-~~~--~~~~~~~Sa~~~~~~~~ll~~i~~~L~~ 232 (359)
++.+.. +.. ......+||+++.++.++++.+.+.+++
T Consensus 583 ~~~~~~~l~~~~~~~ii~iSAktg~gv~~L~~~i~~~~~~ 622 (712)
T PRK09518 583 ERLWKTEFDRVTWARRVNLSAKTGWHTNRLAPAMQEALES 622 (712)
T ss_pred HHHHHHhccCCCCCCEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 111111 100 0111468999999999999999998865
No 56
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.61 E-value=2.5e-15 Score=127.63 Aligned_cols=140 Identities=26% Similarity=0.250 Sum_probs=98.9
Q ss_pred EEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCCcCCCC-cC
Q 018241 60 GIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGAS-QG 138 (359)
Q Consensus 60 ~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~~~~~-~~ 138 (359)
+++|.+|||||||+|+|++.....+++.|++|++.....+... +..+.+|||||+..... ..
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~-----------------~~~~~i~DtpG~~~~~~~~~ 63 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEAEWG-----------------GREFILIDTGGIEPDDEGIS 63 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEEeecCCCCceeCceeEEEEEC-----------------CeEEEEEECCCCCCchhHHH
Confidence 5899999999999999997666667788999988777766654 35699999999976543 12
Q ss_pred cchhhhHhhHHHhcccceEEeecCCC----------------ccEEEeCCcccCCcchHHHHhhhhhccHHHHHHHHHHH
Q 018241 139 EGLGNKFLSHIREVDSILQVVRCFED----------------NDIVHVNGKVDPKSDVDVINLELVFSDLDQIEKRMEKL 202 (359)
Q Consensus 139 ~~~~~~~l~~i~~aD~il~Vvd~~~~----------------~~v~~v~nk~d~~~~~~~i~~el~~~d~~~l~~~~~~~ 202 (359)
..+.+.+...++.+|++++|+|+.+. .+++.+.||+|....... . .. ....
T Consensus 64 ~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~-~-----------~~-~~~~ 130 (157)
T cd01894 64 KEIREQAELAIEEADVILFVVDGREGLTPADEEIAKYLRKSKKPVILVVNKVDNIKEEDE-A-----------AE-FYSL 130 (157)
T ss_pred HHHHHHHHHHHHhCCEEEEEEeccccCCccHHHHHHHHHhcCCCEEEEEECcccCChHHH-H-----------HH-HHhc
Confidence 23444556778999999999998652 357889999997643221 0 00 1111
Q ss_pred hhhccccccchhhHHHHHHHHHHHHHHh
Q 018241 203 KKGKAKDSQSKLKEDAEKAALEKIQQAL 230 (359)
Q Consensus 203 ~~~~~~~~~Sa~~~~~~~~ll~~i~~~L 230 (359)
.. .....+|++.+.++.++++.+.+++
T Consensus 131 ~~-~~~~~~Sa~~~~gv~~l~~~l~~~~ 157 (157)
T cd01894 131 GF-GEPIPISAEHGRGIGDLLDAILELL 157 (157)
T ss_pred CC-CCeEEEecccCCCHHHHHHHHHhhC
Confidence 00 0114678899889999988887653
No 57
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.60 E-value=2.5e-15 Score=149.71 Aligned_cols=112 Identities=28% Similarity=0.391 Sum_probs=89.1
Q ss_pred hccccCCcEEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecC
Q 018241 50 ASKISMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIA 129 (359)
Q Consensus 50 ~~~~~~~~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtp 129 (359)
.+....+++|+++|.||||||||+|+|++...+.++++|+||++...+.+.+++ .++.+||||
T Consensus 197 ~~~~~~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~i~~~g-----------------~~v~l~DTa 259 (442)
T TIGR00450 197 LEKLDDGFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFELNG-----------------ILIKLLDTA 259 (442)
T ss_pred HHHhhcCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcEEEEEEEEEEECC-----------------EEEEEeeCC
Confidence 355667799999999999999999999987778899999999999888887763 568999999
Q ss_pred CCcCCCCcCcchh-hhHhhHHHhcccceEEeecCCC---------------ccEEEeCCcccCCc
Q 018241 130 GLVKGASQGEGLG-NKFLSHIREVDSILQVVRCFED---------------NDIVHVNGKVDPKS 178 (359)
Q Consensus 130 G~~~~~~~~~~~~-~~~l~~i~~aD~il~Vvd~~~~---------------~~v~~v~nk~d~~~ 178 (359)
|+.+.....+..+ ......++++|++++|+|+++. .+++.+.||+|...
T Consensus 260 G~~~~~~~ie~~gi~~~~~~~~~aD~il~V~D~s~~~s~~~~~l~~~~~~~~piIlV~NK~Dl~~ 324 (442)
T TIGR00450 260 GIREHADFVERLGIEKSFKAIKQADLVIYVLDASQPLTKDDFLIIDLNKSKKPFILVLNKIDLKI 324 (442)
T ss_pred CcccchhHHHHHHHHHHHHHHhhCCEEEEEEECCCCCChhHHHHHHHhhCCCCEEEEEECccCCC
Confidence 9965433212121 3456778999999999998752 35788999999753
No 58
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=99.60 E-value=2.1e-14 Score=128.18 Aligned_cols=162 Identities=18% Similarity=0.113 Sum_probs=103.7
Q ss_pred cEEEEEecCCCChhHHHHHHHhccccccCC-CCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCCcCCC
Q 018241 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAAN-FPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA 135 (359)
Q Consensus 57 ~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~-~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~~~~ 135 (359)
++|+++|.||||||||+|+|+|...+.++. .+++|.+.+.+...+. +.++.++||||+.+..
T Consensus 1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~~-----------------~~~i~viDTPG~~d~~ 63 (196)
T cd01852 1 LRLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVWD-----------------GRRVNVIDTPGLFDTS 63 (196)
T ss_pred CEEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEEC-----------------CeEEEEEECcCCCCcc
Confidence 479999999999999999999877665443 5678888887776665 4679999999998664
Q ss_pred CcCcchh----hhHhhHHHhcccceEEeecCCC--------------------ccEEEeCCcccCCcchHHHHhhhhhcc
Q 018241 136 SQGEGLG----NKFLSHIREVDSILQVVRCFED--------------------NDIVHVNGKVDPKSDVDVINLELVFSD 191 (359)
Q Consensus 136 ~~~~~~~----~~~l~~i~~aD~il~Vvd~~~~--------------------~~v~~v~nk~d~~~~~~~i~~el~~~d 191 (359)
...+.+. +.+......+|++++|+|+.+- ..++.+.++.|.+.+- .+.+.+.-..
T Consensus 64 ~~~~~~~~~i~~~~~~~~~g~~~illVi~~~~~t~~d~~~l~~l~~~fg~~~~~~~ivv~T~~d~l~~~-~~~~~~~~~~ 142 (196)
T cd01852 64 VSPEQLSKEIVRCLSLSAPGPHAFLLVVPLGRFTEEEEQAVETLQELFGEKVLDHTIVLFTRGDDLEGG-TLEDYLENSC 142 (196)
T ss_pred CChHHHHHHHHHHHHhcCCCCEEEEEEEECCCcCHHHHHHHHHHHHHhChHhHhcEEEEEECccccCCC-cHHHHHHhcc
Confidence 3222222 2223334668999999998651 1356677777766432 2222111111
Q ss_pred HHHHHHHHHHHhhhc-cc---cccchhhHHHHHHHHHHHHHHhcC-CCCCCC
Q 018241 192 LDQIEKRMEKLKKGK-AK---DSQSKLKEDAEKAALEKIQQALMD-GKPARS 238 (359)
Q Consensus 192 ~~~l~~~~~~~~~~~-~~---~~~Sa~~~~~~~~ll~~i~~~L~~-~~~~~~ 238 (359)
..+...++...... .. .. ++..+.++.+|++.+.+.+++ +.+++.
T Consensus 143 -~~l~~l~~~c~~r~~~f~~~~~-~~~~~~q~~~Ll~~i~~~~~~~~~~~~~ 192 (196)
T cd01852 143 -EALKRLLEKCGGRYVAFNNKAK-GEEQEQQVKELLAKVESMVKENGGKPYT 192 (196)
T ss_pred -HHHHHHHHHhCCeEEEEeCCCC-cchhHHHHHHHHHHHHHHHHhcCCCCCC
Confidence 23333333322221 10 12 456788899999999999987 555553
No 59
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.60 E-value=6.7e-15 Score=125.45 Aligned_cols=149 Identities=32% Similarity=0.335 Sum_probs=99.3
Q ss_pred CcEEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCCcCCC
Q 018241 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA 135 (359)
Q Consensus 56 ~~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~~~~ 135 (359)
.++|+++|.||||||||+|+|+|...+.+++.+.+|.....+....+ ...+.+|||||+....
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~liDtpG~~~~~ 65 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIYTDD-----------------DAQIIFVDTPGIHKPK 65 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCceEeccCCCCceeceEEEEEEcC-----------------CeEEEEEECCCCCcch
Confidence 46899999999999999999998777777777888876666655443 2468999999997554
Q ss_pred Cc-CcchhhhHhhHHHhcccceEEeecCCC----------------ccEEEeCCcccCCcchHHHHhhhhhccHHHHHHH
Q 018241 136 SQ-GEGLGNKFLSHIREVDSILQVVRCFED----------------NDIVHVNGKVDPKSDVDVINLELVFSDLDQIEKR 198 (359)
Q Consensus 136 ~~-~~~~~~~~l~~i~~aD~il~Vvd~~~~----------------~~v~~v~nk~d~~~~~~~i~~el~~~d~~~l~~~ 198 (359)
.. ...+.......+..+|++++|+|+.+. .+++.+.||+|...+...+... ...
T Consensus 66 ~~~~~~~~~~~~~~~~~~d~i~~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~--------~~~- 136 (168)
T cd04163 66 KKLGERMVKAAWSALKDVDLVLFVVDASEPIGEGDEFILELLKKSKTPVILVLNKIDLVKDKEDLLPL--------LEK- 136 (168)
T ss_pred HHHHHHHHHHHHHHHHhCCEEEEEEECCCccCchHHHHHHHHHHhCCCEEEEEEchhccccHHHHHHH--------HHH-
Confidence 32 222333455678999999999999763 2567888998866332222210 011
Q ss_pred HHHHhhhccccccchhhHHHHHHHHHHHHHHh
Q 018241 199 MEKLKKGKAKDSQSKLKEDAEKAALEKIQQAL 230 (359)
Q Consensus 199 ~~~~~~~~~~~~~Sa~~~~~~~~ll~~i~~~L 230 (359)
............+|++.+.++.++++.+.++|
T Consensus 137 ~~~~~~~~~~~~~s~~~~~~~~~l~~~l~~~~ 168 (168)
T cd04163 137 LKELGPFAEIFPISALKGENVDELLEEIVKYL 168 (168)
T ss_pred HHhccCCCceEEEEeccCCChHHHHHHHHhhC
Confidence 11100001114567788888888887776553
No 60
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.58 E-value=6.2e-15 Score=125.62 Aligned_cols=140 Identities=26% Similarity=0.365 Sum_probs=96.5
Q ss_pred EEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCCcCCCCc--C
Q 018241 61 IVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGASQ--G 138 (359)
Q Consensus 61 ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~~~~~~--~ 138 (359)
|+|++|||||||+|++++. ...++++|++|++...+.+.+++ ..+.+|||||+...... .
T Consensus 1 l~G~~~~GKssl~~~~~~~-~~~~~~~~~~t~~~~~~~~~~~~-----------------~~~~liDtpG~~~~~~~~~~ 62 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGA-RQKVGNWPGVTVEKKEGRFKLGG-----------------KEIEIVDLPGTYSLSPYSED 62 (158)
T ss_pred CCCCCCCCHHHHHHHHhcC-cccccCCCCcccccceEEEeeCC-----------------eEEEEEECCCccccCCCChh
Confidence 5899999999999999954 46778899999998888777753 46999999999654432 2
Q ss_pred cchhhhHhhHHHhcccceEEeecCCC--------------ccEEEeCCcccCCcchHHHHhhhhhccHHHHHHHHHHHhh
Q 018241 139 EGLGNKFLSHIREVDSILQVVRCFED--------------NDIVHVNGKVDPKSDVDVINLELVFSDLDQIEKRMEKLKK 204 (359)
Q Consensus 139 ~~~~~~~l~~i~~aD~il~Vvd~~~~--------------~~v~~v~nk~d~~~~~~~i~~el~~~d~~~l~~~~~~~~~ 204 (359)
..+...++.. ..+|++++|+|+.+. .+++.+.||+|...... +.. ....+.+.. .
T Consensus 63 ~~~~~~~~~~-~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~iiv~NK~Dl~~~~~-~~~-----~~~~~~~~~----~ 131 (158)
T cd01879 63 EKVARDFLLG-EKPDLIVNVVDATNLERNLYLTLQLLELGLPVVVALNMIDEAEKRG-IKI-----DLDKLSELL----G 131 (158)
T ss_pred HHHHHHHhcC-CCCcEEEEEeeCCcchhHHHHHHHHHHcCCCEEEEEehhhhccccc-chh-----hHHHHHHhh----C
Confidence 2233334433 589999999998762 35788999999754321 111 111111111 1
Q ss_pred hccccccchhhHHHHHHHHHHHHHHh
Q 018241 205 GKAKDSQSKLKEDAEKAALEKIQQAL 230 (359)
Q Consensus 205 ~~~~~~~Sa~~~~~~~~ll~~i~~~L 230 (359)
.....+|+..+.++.++++.+...+
T Consensus 132 -~~~~~iSa~~~~~~~~l~~~l~~~~ 156 (158)
T cd01879 132 -VPVVPTSARKGEGIDELKDAIAELA 156 (158)
T ss_pred -CCeEEEEccCCCCHHHHHHHHHHHh
Confidence 1125788899989988888887765
No 61
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=99.57 E-value=1.5e-15 Score=141.95 Aligned_cols=232 Identities=13% Similarity=0.061 Sum_probs=124.8
Q ss_pred cEEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCCCccchhc----------cccccccccCceEEEE
Q 018241 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLS----------GLSKSQKAVPASVEFV 126 (359)
Q Consensus 57 ~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~----------~~~~~~~~~~~~i~lv 126 (359)
.+|+|+|++|+|||||+|+|+....+.. ..+...... ..+....|+.. -...+..+.+.++.+|
T Consensus 3 Rni~ivGh~~~GKTTL~e~ll~~~g~i~--~~g~v~~~~----~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~li 76 (267)
T cd04169 3 RTFAIISHPDAGKTTLTEKLLLFGGAIR--EAGAVKARK----SRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLL 76 (267)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCcc--cCceecccc----cCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEE
Confidence 4799999999999999999984332211 111110000 00000111110 1111233446789999
Q ss_pred ecCCCcCCCCcCcchhhhHhhHHHhcccceEEeecCCCccEEEeCCcccCCcchHHHHhhhhhccHHHHHHHHHHHhhhc
Q 018241 127 DIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPKSDVDVINLELVFSDLDQIEKRMEKLKKGK 206 (359)
Q Consensus 127 DtpG~~~~~~~~~~~~~~~l~~i~~aD~il~Vvd~~~~~~v~~v~nk~d~~~~~~~i~~el~~~d~~~l~~~~~~~~~~~ 206 (359)
||||..++.. .....++.+|++++|+|+++. +... .+..+........+.-.+.++.
T Consensus 77 DTPG~~df~~-------~~~~~l~~aD~~IlVvda~~g------------~~~~----~~~i~~~~~~~~~P~iivvNK~ 133 (267)
T cd04169 77 DTPGHEDFSE-------DTYRTLTAVDSAVMVIDAAKG------------VEPQ----TRKLFEVCRLRGIPIITFINKL 133 (267)
T ss_pred ECCCchHHHH-------HHHHHHHHCCEEEEEEECCCC------------ccHH----HHHHHHHHHhcCCCEEEEEECC
Confidence 9999865443 456778999999999998432 2110 1101100000000000011111
Q ss_pred cccccchhhHHHHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHH-HHhhhhcCCeEEEEeCCCcccCCCCCChhHHHHHH
Q 018241 207 AKDSQSKLKEDAEKAALEKIQQALMDGKPARSVTLNDFERDSIK-QLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMN 285 (359)
Q Consensus 207 ~~~~~Sa~~~~~~~~ll~~i~~~L~~~~~~~~~~~t~~~~e~i~-~~~~l~~kp~~y~~nv~~~~~~~~~~~~~~~~i~~ 285 (359)
+ ..+.....+++.+.+.+ +.+..+.+|+..+.+.++ .+++++.|...|.-. .. ...
T Consensus 134 D------~~~a~~~~~~~~l~~~l--~~~~~~~~~Pi~~~~~~~g~vd~~~~~a~~~~~~--~~-------~~~------ 190 (267)
T cd04169 134 D------REGRDPLELLDEIEEEL--GIDCTPLTWPIGMGKDFKGVYDRRTGEVELYDRG--AG-------GAT------ 190 (267)
T ss_pred c------cCCCCHHHHHHHHHHHH--CCCceeEEecccCCCceEEEEEhhhCEEEEecCC--CC-------Ccc------
Confidence 1 11223345677777777 444444455544444455 345566666555110 00 000
Q ss_pred HHHhcCCeEEEeeHHHHHHHcCCCHHHHHHHHHHcCCCCchHHHHHHHHHHhcCCeEEecC
Q 018241 286 LASDLQSGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTS 346 (359)
Q Consensus 286 ~~~~~~~~~i~~sa~le~~l~~l~~~~~~~~l~~~~~~~~~l~~li~~~~~~L~li~ffT~ 346 (359)
....++.+.+.+.+++.+++.+++|+++..+....+..+++.++..-.++|||-.
T Consensus 191 ------~~~~~~p~~~~e~~~e~~~~l~e~~~e~~~~~~~~~~~~~~~~~~~~~~~Pv~~g 245 (267)
T cd04169 191 ------IAPEETKGLDDPKLDELGGDLAEQLREELELLEGAGPEFDQEAFLAGELTPVFFG 245 (267)
T ss_pred ------ceeccCCcccHHHHHhcCHHHHHHHhCCCccchhhhHHHhHHHHHcCCEEEEEec
Confidence 0001111223466888888999999998888878888899999999999999953
No 62
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.56 E-value=1.5e-14 Score=123.84 Aligned_cols=140 Identities=20% Similarity=0.144 Sum_probs=94.8
Q ss_pred EEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCCcCCCCc
Q 018241 58 RAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGASQ 137 (359)
Q Consensus 58 ~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~~~~~~ 137 (359)
||+++|++|||||||+|+|++... ..+..|++|.+.....+.+++. ..++.+|||||.....
T Consensus 2 ki~liG~~~~GKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~---------------~~~l~~~D~~G~~~~~-- 63 (161)
T cd01861 2 KLVFLGDQSVGKTSIITRFMYDTF-DNQYQATIGIDFLSKTMYLEDK---------------TVRLQLWDTAGQERFR-- 63 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCC-CccCCCceeeeEEEEEEEECCE---------------EEEEEEEECCCcHHHH--
Confidence 899999999999999999995544 4466777887777777766542 1468999999964322
Q ss_pred CcchhhhHhhHHHhcccceEEeecCCC--------------------ccEEEeCCcccCCcchHHHHhhhhhccHHHHHH
Q 018241 138 GEGLGNKFLSHIREVDSILQVVRCFED--------------------NDIVHVNGKVDPKSDVDVINLELVFSDLDQIEK 197 (359)
Q Consensus 138 ~~~~~~~~l~~i~~aD~il~Vvd~~~~--------------------~~v~~v~nk~d~~~~~~~i~~el~~~d~~~l~~ 197 (359)
......++.+|++++|+|+++. .+++.+.||+|.......... ....
T Consensus 64 -----~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~~~~~~~~~--------~~~~ 130 (161)
T cd01861 64 -----SLIPSYIRDSSVAVVVYDITNRQSFDNTDKWIDDVRDERGNDVIIVLVGNKTDLSDKRQVSTE--------EGEK 130 (161)
T ss_pred -----HHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEChhccccCccCHH--------HHHH
Confidence 2344567899999999998751 458889999997532211111 1111
Q ss_pred HHHHHhhhccccccchhhHHHHHHHHHHHHHHh
Q 018241 198 RMEKLKKGKAKDSQSKLKEDAEKAALEKIQQAL 230 (359)
Q Consensus 198 ~~~~~~~~~~~~~~Sa~~~~~~~~ll~~i~~~L 230 (359)
...... .....+|++.+.++.++++.+.+.|
T Consensus 131 ~~~~~~--~~~~~~Sa~~~~~v~~l~~~i~~~l 161 (161)
T cd01861 131 KAKELN--AMFIETSAKAGHNVKELFRKIASAL 161 (161)
T ss_pred HHHHhC--CEEEEEeCCCCCCHHHHHHHHHHhC
Confidence 111111 1114678899999999998887653
No 63
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=99.55 E-value=2.8e-14 Score=150.14 Aligned_cols=211 Identities=16% Similarity=0.150 Sum_probs=124.1
Q ss_pred cEEEEEecCCCChhHHHHHHHhccccc-----cCC------------CCceeccceeEEEEeCCCccchhcccccccccc
Q 018241 57 LRAGIVGLPNVGKSTLFNAVVENGKAQ-----AAN------------FPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAV 119 (359)
Q Consensus 57 ~~i~ivG~pn~GKSTL~n~L~~~~~~~-----~~~------------~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~ 119 (359)
.+|+|+|++|+|||||+|+|+...... +.+ ..++|++.....+.+.
T Consensus 11 rni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~----------------- 73 (689)
T TIGR00484 11 RNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWK----------------- 73 (689)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEEC-----------------
Confidence 589999999999999999997432221 111 2345555555555554
Q ss_pred CceEEEEecCCCcCCCCcCcchhhhHhhHHHhcccceEEeecCCCc----------------cEEEeCCcccCCcchHHH
Q 018241 120 PASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDN----------------DIVHVNGKVDPKSDVDVI 183 (359)
Q Consensus 120 ~~~i~lvDtpG~~~~~~~~~~~~~~~l~~i~~aD~il~Vvd~~~~~----------------~v~~v~nk~d~~~~~~~i 183 (359)
+.++.||||||+.++.. .....++.+|++++|+|+.+.. +++.+.||+|..
T Consensus 74 ~~~i~liDTPG~~~~~~-------~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~------ 140 (689)
T TIGR00484 74 GHRINIIDTPGHVDFTV-------EVERSLRVLDGAVAVLDAVGGVQPQSETVWRQANRYEVPRIAFVNKMDKT------ 140 (689)
T ss_pred CeEEEEEECCCCcchhH-------HHHHHHHHhCEEEEEEeCCCCCChhHHHHHHHHHHcCCCEEEEEECCCCC------
Confidence 47899999999976443 4667789999999999996531 122233333322
Q ss_pred HhhhhhccHHHHHHHHHHHhhhccccccchhhHHHHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHH-HHhhhhcCCeEE
Q 018241 184 NLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMDGKPARSVTLNDFERDSIK-QLCLLTMKPIIY 262 (359)
Q Consensus 184 ~~el~~~d~~~l~~~~~~~~~~~~~~~~Sa~~~~~~~~ll~~i~~~L~~~~~~~~~~~t~~~~e~i~-~~~~l~~kp~~y 262 (359)
......+++.+.+.+.... .+..++......+. -++....++..|
T Consensus 141 --------------------------------~~~~~~~~~~i~~~l~~~~--~~~~ipis~~~~~~~~id~~~~~~~~~ 186 (689)
T TIGR00484 141 --------------------------------GANFLRVVNQIKQRLGANA--VPIQLPIGAEDNFIGVIDLVEMKAYFF 186 (689)
T ss_pred --------------------------------CCCHHHHHHHHHHHhCCCc--eeEEeccccCCCceEEEECccceEEec
Confidence 1123345555555553221 11111111011121 112333344444
Q ss_pred EEe----CCCcccCCCCCChhHHHHHHHHHhcCCeEEEeeHHHHHHHcCCCHHHHHHHHHHcCCCCchHHHHHHHHHHhc
Q 018241 263 VAN----VAESDLADPGSNPHVNEVMNLASDLQSGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLL 338 (359)
Q Consensus 263 ~~n----v~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~sa~le~~l~~l~~~~~~~~l~~~~~~~~~l~~li~~~~~~L 338 (359)
-.. ....+++ .+..+.+.++..+ +-+.+++.|++.+++||++..++...+...++.++...
T Consensus 187 ~~~~~~~~~~~~~~----~~~~~~~~~~~~~-----------l~e~v~e~dd~lle~yle~~~~~~~~l~~~l~~~~~~~ 251 (689)
T TIGR00484 187 NGDKGTKAIEKEIP----SDLLEQAKELREN-----------LVEAVAEFDEELMEKYLEGEELTIEEIKNAIRKGVLNC 251 (689)
T ss_pred ccCCCceeeeccCC----HHHHHHHHHHHHH-----------HHHHHHhcCHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Confidence 211 1111122 3344445554433 66788889999999999987787777877888887788
Q ss_pred CCeEEecC
Q 018241 339 GLRTYFTS 346 (359)
Q Consensus 339 ~li~ffT~ 346 (359)
.++|+|-.
T Consensus 252 ~~~PV~~g 259 (689)
T TIGR00484 252 EFFPVLCG 259 (689)
T ss_pred CEEEEEec
Confidence 88888853
No 64
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.54 E-value=2.8e-14 Score=125.23 Aligned_cols=107 Identities=21% Similarity=0.216 Sum_probs=77.1
Q ss_pred CCcEEEEEecCCCChhHHHHHHHhcc-ccccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCCcC
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVVENG-KAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVK 133 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~~~~-~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~~ 133 (359)
..+.|+++|++|||||||+|+|+|+. .+.+|..||.|+..+--.+ ...+.|||.||+--
T Consensus 23 ~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~--------------------~~~~~lVDlPGYGy 82 (200)
T COG0218 23 DLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEV--------------------DDELRLVDLPGYGY 82 (200)
T ss_pred CCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEe--------------------cCcEEEEeCCCccc
Confidence 45799999999999999999999745 5999999999988776544 23489999999942
Q ss_pred CC-Cc--Ccch---hhhHhhHHHhcccceEEeecCCC----------------ccEEEeCCcccCCcchH
Q 018241 134 GA-SQ--GEGL---GNKFLSHIREVDSILQVVRCFED----------------NDIVHVNGKVDPKSDVD 181 (359)
Q Consensus 134 ~~-~~--~~~~---~~~~l~~i~~aD~il~Vvd~~~~----------------~~v~~v~nk~d~~~~~~ 181 (359)
.. ++ .+.+ ...++..=.+-.++++++|+.+. .+++.+.+|+|.+.+-+
T Consensus 83 Akv~k~~~e~w~~~i~~YL~~R~~L~~vvlliD~r~~~~~~D~em~~~l~~~~i~~~vv~tK~DKi~~~~ 152 (200)
T COG0218 83 AKVPKEVKEKWKKLIEEYLEKRANLKGVVLLIDARHPPKDLDREMIEFLLELGIPVIVVLTKADKLKKSE 152 (200)
T ss_pred ccCCHHHHHHHHHHHHHHHhhchhheEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEccccCChhH
Confidence 11 11 1222 23333332345778899999874 35788889999886543
No 65
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.54 E-value=5.7e-13 Score=122.57 Aligned_cols=50 Identities=16% Similarity=0.110 Sum_probs=44.4
Q ss_pred eHHHHHHHcCCCHHHHHHHHHHcCCCCchHHHHHHHHHHhcCCeEEecCC
Q 018241 298 SAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSG 347 (359)
Q Consensus 298 sa~le~~l~~l~~~~~~~~l~~~~~~~~~l~~li~~~~~~L~li~ffT~g 347 (359)
...+-+.+++.||+.+++||++..+++..+...++.+...-.++|||-.+
T Consensus 167 ~~~l~e~vae~dd~l~e~yl~~~~~~~~el~~~l~~~~~~~~~~Pv~~gs 216 (237)
T cd04168 167 DDEFWETLAEGDDELLEKYLEGGPIEELELDNELSARIAKRKVFPVYHGS 216 (237)
T ss_pred cHHHHHHHhcCCHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCeEEEEEcc
Confidence 45677889999999999999999999999999999999999999999643
No 66
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.53 E-value=5.8e-14 Score=124.48 Aligned_cols=150 Identities=20% Similarity=0.170 Sum_probs=94.6
Q ss_pred CCcEEEEEecCCCChhHHHHHHHhcc-ccccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCCcC
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVVENG-KAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVK 133 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~~~~-~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~~ 133 (359)
..++|+++|.+|||||||+|+|++.. .+.+++.+++|++...... ..++.||||||+..
T Consensus 23 ~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~--------------------~~~l~l~DtpG~~~ 82 (196)
T PRK00454 23 DGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFEV--------------------NDKLRLVDLPGYGY 82 (196)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEec--------------------CCeEEEeCCCCCCC
Confidence 45799999999999999999999654 5677888888865543221 14699999999754
Q ss_pred CCCcC---c---chhhhHhhHHHhcccceEEeecCCC----------------ccEEEeCCcccCCcchHHHHhhhhhcc
Q 018241 134 GASQG---E---GLGNKFLSHIREVDSILQVVRCFED----------------NDIVHVNGKVDPKSDVDVINLELVFSD 191 (359)
Q Consensus 134 ~~~~~---~---~~~~~~l~~i~~aD~il~Vvd~~~~----------------~~v~~v~nk~d~~~~~~~i~~el~~~d 191 (359)
..... + .+...++.....++++++|+|+... .+++.+.||+|...+.+. .. .
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~i~~~l~~~~~~~iiv~nK~Dl~~~~~~-~~-~---- 156 (196)
T PRK00454 83 AKVSKEEKEKWQKLIEEYLRTRENLKGVVLLIDSRHPLKELDLQMIEWLKEYGIPVLIVLTKADKLKKGER-KK-Q---- 156 (196)
T ss_pred cCCCchHHHHHHHHHHHHHHhCccceEEEEEEecCCCCCHHHHHHHHHHHHcCCcEEEEEECcccCCHHHH-HH-H----
Confidence 22111 1 1122333333455788899987652 245778889987643221 10 0
Q ss_pred HHHHHHHHHHHhhhccccccchhhHHHHHHHHHHHHHHhcC
Q 018241 192 LDQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMD 232 (359)
Q Consensus 192 ~~~l~~~~~~~~~~~~~~~~Sa~~~~~~~~ll~~i~~~L~~ 232 (359)
.+.+...+... .....++||+++.++.++++.+.+++.+
T Consensus 157 ~~~i~~~l~~~--~~~~~~~Sa~~~~gi~~l~~~i~~~~~~ 195 (196)
T PRK00454 157 LKKVRKALKFG--DDEVILFSSLKKQGIDELRAAIAKWLAE 195 (196)
T ss_pred HHHHHHHHHhc--CCceEEEEcCCCCCHHHHHHHHHHHhcC
Confidence 01111111111 1111577899999999999998888754
No 67
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=99.52 E-value=5.9e-14 Score=127.10 Aligned_cols=144 Identities=15% Similarity=0.161 Sum_probs=93.1
Q ss_pred cEEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCCcCCCC
Q 018241 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGAS 136 (359)
Q Consensus 57 ~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~~~~~ 136 (359)
+||+++|.+|||||||+|+|+++. ......|..+.+.....+.+++.. ...+.+|||||...+..
T Consensus 1 ~Ki~ivG~~~vGKSsLi~~l~~~~-~~~~~~~T~~~d~~~~~i~~~~~~--------------~~~~~i~Dt~G~~~~~~ 65 (215)
T cd04109 1 FKIVVLGDGAVGKTSLCRRFAKEG-FGKSYKQTIGLDFFSKRVTLPGNL--------------NVTLQVWDIGGQSIGGK 65 (215)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCC-CCCCCCCceeEEEEEEEEEeCCCC--------------EEEEEEEECCCcHHHHH
Confidence 489999999999999999999543 333334444445444445554321 35689999999743322
Q ss_pred cCcchhhhHhhHHHhcccceEEeecCCC-----------------------ccEEEeCCcccCCcchHHHHhhhhhccHH
Q 018241 137 QGEGLGNKFLSHIREVDSILQVVRCFED-----------------------NDIVHVNGKVDPKSDVDVINLELVFSDLD 193 (359)
Q Consensus 137 ~~~~~~~~~l~~i~~aD~il~Vvd~~~~-----------------------~~v~~v~nk~d~~~~~~~i~~el~~~d~~ 193 (359)
.....+++||++++|+|+++. .+++.+.||.|..........
T Consensus 66 -------l~~~~~~~ad~iilV~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~~v~~~-------- 130 (215)
T cd04109 66 -------MLDKYIYGAHAVFLVYDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNRTVKDD-------- 130 (215)
T ss_pred -------HHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECcccccccccCHH--------
Confidence 233457899999999998861 246789999997533221111
Q ss_pred HHHHHHHHHhhhccccccchhhHHHHHHHHHHHHHHhcC
Q 018241 194 QIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMD 232 (359)
Q Consensus 194 ~l~~~~~~~~~~~~~~~~Sa~~~~~~~~ll~~i~~~L~~ 232 (359)
.... +..... .....+||+.+.++.++++.+.+.+..
T Consensus 131 ~~~~-~~~~~~-~~~~~iSAktg~gv~~lf~~l~~~l~~ 167 (215)
T cd04109 131 KHAR-FAQANG-MESCLVSAKTGDRVNLLFQQLAAELLG 167 (215)
T ss_pred HHHH-HHHHcC-CEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 1111 111111 112467999999999999999988753
No 68
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.52 E-value=5.9e-14 Score=122.03 Aligned_cols=143 Identities=17% Similarity=0.127 Sum_probs=93.2
Q ss_pred EEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCCcCCCCc
Q 018241 58 RAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGASQ 137 (359)
Q Consensus 58 ~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~~~~~~ 137 (359)
||+++|.+|||||||++++++.... . +.+|+......+.+. +.++.+|||||..+...
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~~~---~-~~~T~~~~~~~~~~~-----------------~~~i~l~Dt~G~~~~~~- 58 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDEFM---Q-PIPTIGFNVETVEYK-----------------NLKFTIWDVGGKHKLRP- 58 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCC---C-cCCcCceeEEEEEEC-----------------CEEEEEEECCCChhcch-
Confidence 5899999999999999999955321 2 234443444434333 36799999999864433
Q ss_pred CcchhhhHhhHHHhcccceEEeecCCC---------------------ccEEEeCCcccCCcc--hHHHHhhhhhccHHH
Q 018241 138 GEGLGNKFLSHIREVDSILQVVRCFED---------------------NDIVHVNGKVDPKSD--VDVINLELVFSDLDQ 194 (359)
Q Consensus 138 ~~~~~~~~l~~i~~aD~il~Vvd~~~~---------------------~~v~~v~nk~d~~~~--~~~i~~el~~~d~~~ 194 (359)
.+...++++|++++|+|+++. .+++.+.||.|.... .+.+...+.....
T Consensus 59 ------~~~~~~~~ad~ii~V~D~s~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~-- 130 (169)
T cd04158 59 ------LWKHYYLNTQAVVFVVDSSHRDRVSEAHSELAKLLTEKELRDALLLIFANKQDVAGALSVEEMTELLSLHKL-- 130 (169)
T ss_pred ------HHHHHhccCCEEEEEEeCCcHHHHHHHHHHHHHHhcChhhCCCCEEEEEeCcCcccCCCHHHHHHHhCCccc--
Confidence 455667899999999998762 357889999996532 1222111100000
Q ss_pred HHHHHHHHhhhccccccchhhHHHHHHHHHHHHHHhcCCCCC
Q 018241 195 IEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMDGKPA 236 (359)
Q Consensus 195 l~~~~~~~~~~~~~~~~Sa~~~~~~~~ll~~i~~~L~~~~~~ 236 (359)
. .........+||+++.++.++++.+.+.+.++.++
T Consensus 131 -~-----~~~~~~~~~~Sa~~g~gv~~~f~~l~~~~~~~~~~ 166 (169)
T cd04158 131 -C-----CGRSWYIQGCDARSGMGLYEGLDWLSRQLVAAGVL 166 (169)
T ss_pred -c-----CCCcEEEEeCcCCCCCCHHHHHHHHHHHHhhcccc
Confidence 0 00001113579999999999999999888776554
No 69
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.52 E-value=2.4e-14 Score=125.78 Aligned_cols=104 Identities=22% Similarity=0.213 Sum_probs=70.7
Q ss_pred cCCcEEEEEecCCCChhHHHHHHHhcc-ccccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCCc
Q 018241 54 SMSLRAGIVGLPNVGKSTLFNAVVENG-KAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLV 132 (359)
Q Consensus 54 ~~~~~i~ivG~pn~GKSTL~n~L~~~~-~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~ 132 (359)
...++|+|+|.+|+|||||+|+|++.. ...+++.+++|.+...... + .++.+|||||+.
T Consensus 16 ~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~--~------------------~~~~liDtpG~~ 75 (179)
T TIGR03598 16 DDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEV--N------------------DGFRLVDLPGYG 75 (179)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEe--C------------------CcEEEEeCCCCc
Confidence 345799999999999999999999664 5667788888876543322 1 248999999985
Q ss_pred CCCCcCc------chhhhHhhHHHhcccceEEeecCCC----------------ccEEEeCCcccCC
Q 018241 133 KGASQGE------GLGNKFLSHIREVDSILQVVRCFED----------------NDIVHVNGKVDPK 177 (359)
Q Consensus 133 ~~~~~~~------~~~~~~l~~i~~aD~il~Vvd~~~~----------------~~v~~v~nk~d~~ 177 (359)
....... .+...++.....+|++++|+|+... .+++.+.||+|..
T Consensus 76 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~ii~vvd~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~ 142 (179)
T TIGR03598 76 YAKVSKEEKEKWQKLIEEYLEKRENLKGVVLLMDIRHPLKELDLEMLEWLRERGIPVLIVLTKADKL 142 (179)
T ss_pred cccCChhHHHHHHHHHHHHHHhChhhcEEEEEecCCCCCCHHHHHHHHHHHHcCCCEEEEEECcccC
Confidence 4322111 1112233333456899999998652 2466777777765
No 70
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=99.52 E-value=1.2e-13 Score=118.47 Aligned_cols=140 Identities=16% Similarity=0.142 Sum_probs=90.3
Q ss_pred cEEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCCcCCCC
Q 018241 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGAS 136 (359)
Q Consensus 57 ~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~~~~~ 136 (359)
+||+++|.||||||||+|++++... ++.++.++.+.....+.+.+. ..++.+|||||..+...
T Consensus 3 ~ki~i~G~~~~GKtsl~~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~---------------~~~~~i~Dt~G~~~~~~ 65 (164)
T cd04145 3 YKLVVVGGGGVGKSALTIQFIQSYF--VTDYDPTIEDSYTKQCEIDGQ---------------WAILDILDTAGQEEFSA 65 (164)
T ss_pred eEEEEECCCCCcHHHHHHHHHhCCC--CcccCCCccceEEEEEEECCE---------------EEEEEEEECCCCcchhH
Confidence 6999999999999999999995443 344454554333333333321 24688999999864432
Q ss_pred cCcchhhhHhhHHHhcccceEEeecCC---------------------CccEEEeCCcccCCcchHHHHhhhhhccHHHH
Q 018241 137 QGEGLGNKFLSHIREVDSILQVVRCFE---------------------DNDIVHVNGKVDPKSDVDVINLELVFSDLDQI 195 (359)
Q Consensus 137 ~~~~~~~~~l~~i~~aD~il~Vvd~~~---------------------~~~v~~v~nk~d~~~~~~~i~~el~~~d~~~l 195 (359)
.....++.+|++++|+|+++ +.+++.+.||+|...+..... +..
T Consensus 66 -------~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl~~~~~~~~--------~~~ 130 (164)
T cd04145 66 -------MREQYMRTGEGFLLVFSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLEHQRKVSR--------EEG 130 (164)
T ss_pred -------HHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCccccccceecH--------HHH
Confidence 33455688999999999876 236788999999653321100 111
Q ss_pred HHHHHHHhhhccccccchhhHHHHHHHHHHHHHHh
Q 018241 196 EKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQAL 230 (359)
Q Consensus 196 ~~~~~~~~~~~~~~~~Sa~~~~~~~~ll~~i~~~L 230 (359)
........ .....+||+.+.++.++++.+.+.+
T Consensus 131 ~~~~~~~~--~~~~~~Sa~~~~~i~~l~~~l~~~~ 163 (164)
T cd04145 131 QELARKLK--IPYIETSAKDRLNVDKAFHDLVRVI 163 (164)
T ss_pred HHHHHHcC--CcEEEeeCCCCCCHHHHHHHHHHhh
Confidence 11111111 1125789999999999999888765
No 71
>PRK04213 GTP-binding protein; Provisional
Probab=99.51 E-value=1.7e-13 Score=122.28 Aligned_cols=147 Identities=19% Similarity=0.176 Sum_probs=92.5
Q ss_pred CCcEEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCCcCC
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~~~ 134 (359)
..++|+++|.+|||||||+|+|++.. ..++..|++|+++... .+ ..+.+|||||+...
T Consensus 8 ~~~~i~i~G~~~~GKSsLin~l~~~~-~~~~~~~~~t~~~~~~--~~-------------------~~~~l~Dt~G~~~~ 65 (201)
T PRK04213 8 RKPEIVFVGRSNVGKSTLVRELTGKK-VRVGKRPGVTRKPNHY--DW-------------------GDFILTDLPGFGFM 65 (201)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC-CccCCCCceeeCceEE--ee-------------------cceEEEeCCccccc
Confidence 35799999999999999999999554 6677889998775432 22 14899999997321
Q ss_pred CCc----Ccchhhh---Hh-hHHHhcccceEEeecCC---------------------------CccEEEeCCcccCCcc
Q 018241 135 ASQ----GEGLGNK---FL-SHIREVDSILQVVRCFE---------------------------DNDIVHVNGKVDPKSD 179 (359)
Q Consensus 135 ~~~----~~~~~~~---~l-~~i~~aD~il~Vvd~~~---------------------------~~~v~~v~nk~d~~~~ 179 (359)
... .+.+... ++ ..+..+|++++|+|+.. +.+++.+.||+|....
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~p~iiv~NK~Dl~~~ 145 (201)
T PRK04213 66 SGVPKEVQEKIKDEIVRYIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLRELGIPPIVAVNKMDKIKN 145 (201)
T ss_pred cccCHHHHHHHHHHHHHHHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHHcCCCeEEEEECccccCc
Confidence 111 1111111 22 23456789999999853 1257889999997543
Q ss_pred hHHHHhhhhhccHHHHHHHHHH---Hhhh-ccccccchhhHHHHHHHHHHHHHHhcC
Q 018241 180 VDVINLELVFSDLDQIEKRMEK---LKKG-KAKDSQSKLKEDAEKAALEKIQQALMD 232 (359)
Q Consensus 180 ~~~i~~el~~~d~~~l~~~~~~---~~~~-~~~~~~Sa~~~~~~~~ll~~i~~~L~~ 232 (359)
...... .+.+.+.. +... .....+||+++ ++.++++.+.+.+++
T Consensus 146 ~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~SA~~g-gi~~l~~~l~~~~~~ 193 (201)
T PRK04213 146 RDEVLD--------EIAERLGLYPPWRQWQDIIAPISAKKG-GIEELKEAIRKRLHE 193 (201)
T ss_pred HHHHHH--------HHHHHhcCCccccccCCcEEEEecccC-CHHHHHHHHHHhhcC
Confidence 211111 11111110 0000 01146899999 999999999888754
No 72
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.51 E-value=5.3e-14 Score=123.33 Aligned_cols=142 Identities=20% Similarity=0.181 Sum_probs=90.8
Q ss_pred EEEEEecCCCChhHHHHHHHhccccccC---------------CCCceeccceeEEEEeCCCccchhccccccccccCce
Q 018241 58 RAGIVGLPNVGKSTLFNAVVENGKAQAA---------------NFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPAS 122 (359)
Q Consensus 58 ~i~ivG~pn~GKSTL~n~L~~~~~~~~~---------------~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~ 122 (359)
+|+++|.+|||||||+|+|++....... ...++|.+.....+... ...
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~ 63 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWP-----------------DRR 63 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeC-----------------CEE
Confidence 4899999999999999999965443221 11223333332222222 357
Q ss_pred EEEEecCCCcCCCCcCcchhhhHhhHHHhcccceEEeecCC----------------CccEEEeCCcccCCcch--HHHH
Q 018241 123 VEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFE----------------DNDIVHVNGKVDPKSDV--DVIN 184 (359)
Q Consensus 123 i~lvDtpG~~~~~~~~~~~~~~~l~~i~~aD~il~Vvd~~~----------------~~~v~~v~nk~d~~~~~--~~i~ 184 (359)
+.||||||..+.. ..+...++.+|++++|+|+++ ..+++.+.||+|..... ....
T Consensus 64 ~~liDtpG~~~~~-------~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~i~iv~nK~D~~~~~~~~~~~ 136 (189)
T cd00881 64 VNFIDTPGHEDFS-------SEVIRGLSVSDGAILVVDANEGVQPQTREHLRIAREGGLPIIVAINKIDRVGEEDLEEVL 136 (189)
T ss_pred EEEEeCCCcHHHH-------HHHHHHHHhcCEEEEEEECCCCCcHHHHHHHHHHHHCCCCeEEEEECCCCcchhcHHHHH
Confidence 9999999985332 255667789999999999876 24578999999987421 1111
Q ss_pred hhhhhccHHHHHHHHHHHh------------hhccccccchhhHHHHHHHHHHHHHHhc
Q 018241 185 LELVFSDLDQIEKRMEKLK------------KGKAKDSQSKLKEDAEKAALEKIQQALM 231 (359)
Q Consensus 185 ~el~~~d~~~l~~~~~~~~------------~~~~~~~~Sa~~~~~~~~ll~~i~~~L~ 231 (359)
. .+.+.+.... .......+|++.+.++.++++.+...++
T Consensus 137 ~--------~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l~ 187 (189)
T cd00881 137 R--------EIKELLGLIGFISTKEEGTRNGLLVPIVPGSALTGIGVEELLEAIVEHLP 187 (189)
T ss_pred H--------HHHHHHccccccchhhhhcccCCcceEEEEecccCcCHHHHHHHHHhhCC
Confidence 1 1111111110 0111156799999999999999888875
No 73
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.51 E-value=6.1e-14 Score=120.83 Aligned_cols=147 Identities=15% Similarity=0.075 Sum_probs=90.9
Q ss_pred cEEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCCcCCCC
Q 018241 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGAS 136 (359)
Q Consensus 57 ~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~~~~~ 136 (359)
+.|+|+|.+|+|||||+|+|++.. ......+++|.+.....+.... ..+..+.+|||||......
T Consensus 1 ~~i~iiG~~~~GKtsli~~l~~~~-~~~~~~~~~t~~~~~~~~~~~~--------------~~~~~~~iiDtpG~~~~~~ 65 (168)
T cd01887 1 PVVTVMGHVDHGKTTLLDKIRKTN-VAAGEAGGITQHIGAFEVPAEV--------------LKIPGITFIDTPGHEAFTN 65 (168)
T ss_pred CEEEEEecCCCCHHHHHHHHHhcc-cccccCCCeEEeeccEEEeccc--------------CCcceEEEEeCCCcHHHHH
Confidence 369999999999999999999544 3334556677655444444320 0035699999999743221
Q ss_pred cCcchhhhHhhHHHhcccceEEeecCCC----------------ccEEEeCCcccCCcch-HHHHhhhhhccHHHHHHHH
Q 018241 137 QGEGLGNKFLSHIREVDSILQVVRCFED----------------NDIVHVNGKVDPKSDV-DVINLELVFSDLDQIEKRM 199 (359)
Q Consensus 137 ~~~~~~~~~l~~i~~aD~il~Vvd~~~~----------------~~v~~v~nk~d~~~~~-~~i~~el~~~d~~~l~~~~ 199 (359)
.....++.+|++++|+|+++. .+++.+.||+|..... ..+..++. ......
T Consensus 66 -------~~~~~~~~~d~il~v~d~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~-----~~~~~~ 133 (168)
T cd01887 66 -------MRARGASLTDIAILVVAADDGVMPQTIEAIKLAKAANVPFIVALNKIDKPNANPERVKNELS-----ELGLQG 133 (168)
T ss_pred -------HHHHHHhhcCEEEEEEECCCCccHHHHHHHHHHHHcCCCEEEEEEceecccccHHHHHHHHH-----Hhhccc
Confidence 233456789999999999762 3578899999965321 11111110 000000
Q ss_pred -HHHhhhccccccchhhHHHHHHHHHHHHHHh
Q 018241 200 -EKLKKGKAKDSQSKLKEDAEKAALEKIQQAL 230 (359)
Q Consensus 200 -~~~~~~~~~~~~Sa~~~~~~~~ll~~i~~~L 230 (359)
..........++|++.+.++.++++.+.++.
T Consensus 134 ~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 165 (168)
T cd01887 134 EDEWGGDVQIVPTSAKTGEGIDDLLEAILLLA 165 (168)
T ss_pred cccccCcCcEEEeecccCCCHHHHHHHHHHhh
Confidence 0000011115778899999999888887665
No 74
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.50 E-value=6.7e-14 Score=120.68 Aligned_cols=138 Identities=19% Similarity=0.204 Sum_probs=87.7
Q ss_pred EEEEEecCCCChhHHHHHHHhcccc---ccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCCcCC
Q 018241 58 RAGIVGLPNVGKSTLFNAVVENGKA---QAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (359)
Q Consensus 58 ~i~ivG~pn~GKSTL~n~L~~~~~~---~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~~~ 134 (359)
+|+++|.+|+|||||+|+|++.... .......+|+....+.+.++ +.++.+|||||....
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~-----------------~~~~~l~Dt~G~~~~ 63 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIGTIEVG-----------------NARLKFWDLGGQESL 63 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccceEEEEEC-----------------CEEEEEEECCCChhh
Confidence 5899999999999999999853221 11122344555555656554 357999999998643
Q ss_pred CCcCcchhhhHhhHHHhcccceEEeecCCC---------------------ccEEEeCCcccCCcchH--HHHhhhhhcc
Q 018241 135 ASQGEGLGNKFLSHIREVDSILQVVRCFED---------------------NDIVHVNGKVDPKSDVD--VINLELVFSD 191 (359)
Q Consensus 135 ~~~~~~~~~~~l~~i~~aD~il~Vvd~~~~---------------------~~v~~v~nk~d~~~~~~--~i~~el~~~d 191 (359)
.. .+...++.+|++++|+|+++. .+++.+.||+|...... .+...
T Consensus 64 ~~-------~~~~~~~~~~~~v~vvd~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~~~~~~~~~~~----- 131 (167)
T cd04160 64 RS-------LWDKYYAECHAIIYVIDSTDRERFEESKSALEKVLRNEALEGVPLLILANKQDLPDALSVEEIKEV----- 131 (167)
T ss_pred HH-------HHHHHhCCCCEEEEEEECchHHHHHHHHHHHHHHHhChhhcCCCEEEEEEccccccCCCHHHHHHH-----
Confidence 32 345567899999999998752 46888999999653221 11110
Q ss_pred HHHHHHHHHHHhh-hccccccchhhHHHHHHHHHHHH
Q 018241 192 LDQIEKRMEKLKK-GKAKDSQSKLKEDAEKAALEKIQ 227 (359)
Q Consensus 192 ~~~l~~~~~~~~~-~~~~~~~Sa~~~~~~~~ll~~i~ 227 (359)
++........ ..+...+||+++.++.++++.+.
T Consensus 132 ---~~~~~~~~~~~~~~~~~~Sa~~g~gv~e~~~~l~ 165 (167)
T cd04160 132 ---FQDKAEEIGRRDCLVLPVSALEGTGVREGIEWLV 165 (167)
T ss_pred ---hccccccccCCceEEEEeeCCCCcCHHHHHHHHh
Confidence 0110000000 01125678999999888887664
No 75
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=99.50 E-value=1.4e-13 Score=118.05 Aligned_cols=140 Identities=14% Similarity=0.097 Sum_probs=89.1
Q ss_pred cEEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCCcCCCC
Q 018241 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGAS 136 (359)
Q Consensus 57 ~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~~~~~ 136 (359)
+||+++|.||||||||+|++.++... ..++.|+.+.....+.+++. ...+.+|||||......
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~---------------~~~l~i~Dt~G~~~~~~ 64 (163)
T cd04136 2 YKVVVLGSGGVGKSALTVQFVQGIFV--EKYDPTIEDSYRKQIEVDGQ---------------QCMLEILDTAGTEQFTA 64 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCC--cccCCchhhhEEEEEEECCE---------------EEEEEEEECCCccccch
Confidence 68999999999999999999955432 23444444333333444321 24578999999865443
Q ss_pred cCcchhhhHhhHHHhcccceEEeecCC---------------------CccEEEeCCcccCCcchHHHHhhhhhccHHHH
Q 018241 137 QGEGLGNKFLSHIREVDSILQVVRCFE---------------------DNDIVHVNGKVDPKSDVDVINLELVFSDLDQI 195 (359)
Q Consensus 137 ~~~~~~~~~l~~i~~aD~il~Vvd~~~---------------------~~~v~~v~nk~d~~~~~~~i~~el~~~d~~~l 195 (359)
.....++++|++++|+|.++ +.+++.+.||+|...+...... +...+
T Consensus 65 -------~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~-----~~~~~ 132 (163)
T cd04136 65 -------MRDLYIKNGQGFVLVYSITSQSSFNDLQDLREQILRVKDTENVPMVLVGNKCDLEDERVVSRE-----EGQAL 132 (163)
T ss_pred -------HHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceecHH-----HHHHH
Confidence 22345688999999999875 2357889999996532211111 01111
Q ss_pred HHHHHHHhhhccccccchhhHHHHHHHHHHHHHHh
Q 018241 196 EKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQAL 230 (359)
Q Consensus 196 ~~~~~~~~~~~~~~~~Sa~~~~~~~~ll~~i~~~L 230 (359)
.+ ... .....+||+.+.++.++++.+.+.+
T Consensus 133 ~~---~~~--~~~~~~Sa~~~~~v~~l~~~l~~~~ 162 (163)
T cd04136 133 AR---QWG--CPFYETSAKSKINVDEVFADLVRQI 162 (163)
T ss_pred HH---HcC--CeEEEecCCCCCCHHHHHHHHHHhc
Confidence 11 111 1114679999999999998887654
No 76
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=99.50 E-value=7.9e-14 Score=120.12 Aligned_cols=141 Identities=17% Similarity=0.117 Sum_probs=91.2
Q ss_pred cEEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCCcCCCC
Q 018241 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGAS 136 (359)
Q Consensus 57 ~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~~~~~ 136 (359)
.+|+++|.||||||||+|++++... .....|.++.+.....+..++. ...+.+|||||......
T Consensus 4 ~ki~vvG~~~~GKSsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~---------------~~~~~l~D~~g~~~~~~ 67 (165)
T cd01868 4 FKIVLIGDSGVGKSNLLSRFTRNEF-NLDSKSTIGVEFATRSIQIDGK---------------TIKAQIWDTAGQERYRA 67 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCC-CCCCCCccceEEEEEEEEECCE---------------EEEEEEEeCCChHHHHH
Confidence 6999999999999999999995543 3334455554444444544431 24689999999753222
Q ss_pred cCcchhhhHhhHHHhcccceEEeecCC--------------------CccEEEeCCcccCCcchHHHHhhhhhccHHHHH
Q 018241 137 QGEGLGNKFLSHIREVDSILQVVRCFE--------------------DNDIVHVNGKVDPKSDVDVINLELVFSDLDQIE 196 (359)
Q Consensus 137 ~~~~~~~~~l~~i~~aD~il~Vvd~~~--------------------~~~v~~v~nk~d~~~~~~~i~~el~~~d~~~l~ 196 (359)
.....++++|++++|+|+++ +.+++.+.||.|.........+ ...
T Consensus 68 -------~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pi~vv~nK~Dl~~~~~~~~~--------~~~ 132 (165)
T cd01868 68 -------ITSAYYRGAVGALLVYDITKKQTFENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTE--------EAK 132 (165)
T ss_pred -------HHHHHHCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccccCCHH--------HHH
Confidence 23345678999999999876 2457889999996532111111 111
Q ss_pred HHHHHHhhhccccccchhhHHHHHHHHHHHHHHh
Q 018241 197 KRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQAL 230 (359)
Q Consensus 197 ~~~~~~~~~~~~~~~Sa~~~~~~~~ll~~i~~~L 230 (359)
..... .. .....+||+.+.++.++++.+.+.+
T Consensus 133 ~~~~~-~~-~~~~~~Sa~~~~~v~~l~~~l~~~i 164 (165)
T cd01868 133 AFAEK-NG-LSFIETSALDGTNVEEAFKQLLTEI 164 (165)
T ss_pred HHHHH-cC-CEEEEEECCCCCCHHHHHHHHHHHh
Confidence 11111 11 1125679999999999999887664
No 77
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.50 E-value=1.5e-13 Score=120.02 Aligned_cols=145 Identities=19% Similarity=0.148 Sum_probs=88.5
Q ss_pred EEEEEecCCCChhHHHHHHHhccccccC--------------CCCceeccceeEEEEeCCCccchhccccccccccCceE
Q 018241 58 RAGIVGLPNVGKSTLFNAVVENGKAQAA--------------NFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASV 123 (359)
Q Consensus 58 ~i~ivG~pn~GKSTL~n~L~~~~~~~~~--------------~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i 123 (359)
+|+++|.+|+|||||+++|++...+... ...++|.++....+.+. +......++
T Consensus 2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~------------~~~~~~~~~ 69 (179)
T cd01890 2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYK------------AKDGQEYLL 69 (179)
T ss_pred cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEe------------cCCCCcEEE
Confidence 6999999999999999999954321100 01123333222222221 001114578
Q ss_pred EEEecCCCcCCCCcCcchhhhHhhHHHhcccceEEeecCCC----------------ccEEEeCCcccCCcch-HHHHhh
Q 018241 124 EFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFED----------------NDIVHVNGKVDPKSDV-DVINLE 186 (359)
Q Consensus 124 ~lvDtpG~~~~~~~~~~~~~~~l~~i~~aD~il~Vvd~~~~----------------~~v~~v~nk~d~~~~~-~~i~~e 186 (359)
.||||||+.+... .+...++.+|++++|+|+++. .+++.+.||+|..... .....
T Consensus 70 ~l~Dt~G~~~~~~-------~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~~~~~~iiiv~NK~Dl~~~~~~~~~~- 141 (179)
T cd01890 70 NLIDTPGHVDFSY-------EVSRSLAACEGALLLVDATQGVEAQTLANFYLALENNLEIIPVINKIDLPSADPERVKQ- 141 (179)
T ss_pred EEEECCCChhhHH-------HHHHHHHhcCeEEEEEECCCCccHhhHHHHHHHHHcCCCEEEEEECCCCCcCCHHHHHH-
Confidence 9999999975433 455677899999999999763 2578899999965321 11111
Q ss_pred hhhccHHHHHHHHHHHhhhccccccchhhHHHHHHHHHHHHHHhc
Q 018241 187 LVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALM 231 (359)
Q Consensus 187 l~~~d~~~l~~~~~~~~~~~~~~~~Sa~~~~~~~~ll~~i~~~L~ 231 (359)
.+.+... +. ......+||+.+.++.++++.+.+.++
T Consensus 142 -------~~~~~~~-~~-~~~~~~~Sa~~g~gi~~l~~~l~~~~~ 177 (179)
T cd01890 142 -------QIEDVLG-LD-PSEAILVSAKTGLGVEDLLEAIVERIP 177 (179)
T ss_pred -------HHHHHhC-CC-cccEEEeeccCCCCHHHHHHHHHhhCC
Confidence 1111110 00 001146899999999999999888764
No 78
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=99.49 E-value=1.3e-13 Score=119.05 Aligned_cols=141 Identities=14% Similarity=0.135 Sum_probs=89.8
Q ss_pred cEEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCCcCCCC
Q 018241 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGAS 136 (359)
Q Consensus 57 ~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~~~~~ 136 (359)
+||+++|.+|||||||+++++++.. .....|..+.+.....+.+.+. ..++.+|||||......
T Consensus 3 ~ki~i~G~~~vGKSsli~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~---------------~~~~~i~D~~G~~~~~~ 66 (166)
T cd01869 3 FKLLLIGDSGVGKSCLLLRFADDTY-TESYISTIGVDFKIRTIELDGK---------------TIKLQIWDTAGQERFRT 66 (166)
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCC-CCCCCCccceeEEEEEEEECCE---------------EEEEEEEECCCcHhHHH
Confidence 6899999999999999999995433 2233343333333344444321 24689999999754322
Q ss_pred cCcchhhhHhhHHHhcccceEEeecCCC--------------------ccEEEeCCcccCCcchHHHHhhhhhccHHHHH
Q 018241 137 QGEGLGNKFLSHIREVDSILQVVRCFED--------------------NDIVHVNGKVDPKSDVDVINLELVFSDLDQIE 196 (359)
Q Consensus 137 ~~~~~~~~~l~~i~~aD~il~Vvd~~~~--------------------~~v~~v~nk~d~~~~~~~i~~el~~~d~~~l~ 196 (359)
.....++.+|++++|+|+++. .+++.+.||.|...+..... +...
T Consensus 67 -------~~~~~~~~~~~ii~v~d~~~~~s~~~l~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~--------~~~~ 131 (166)
T cd01869 67 -------ITSSYYRGAHGIIIVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTDKRVVDY--------SEAQ 131 (166)
T ss_pred -------HHHHHhCcCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEEChhcccccCCCH--------HHHH
Confidence 334556889999999998762 35788899999653221100 1111
Q ss_pred HHHHHHhhhccccccchhhHHHHHHHHHHHHHHh
Q 018241 197 KRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQAL 230 (359)
Q Consensus 197 ~~~~~~~~~~~~~~~Sa~~~~~~~~ll~~i~~~L 230 (359)
....... .....+||+.+.++.++++.+.+.+
T Consensus 132 ~~~~~~~--~~~~~~Sa~~~~~v~~~~~~i~~~~ 163 (166)
T cd01869 132 EFADELG--IPFLETSAKNATNVEQAFMTMAREI 163 (166)
T ss_pred HHHHHcC--CeEEEEECCCCcCHHHHHHHHHHHH
Confidence 1111111 1114689999999999999888776
No 79
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.49 E-value=2.2e-13 Score=114.55 Aligned_cols=146 Identities=21% Similarity=0.193 Sum_probs=98.1
Q ss_pred EEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCCcCCCCcCcc
Q 018241 61 IVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGASQGEG 140 (359)
Q Consensus 61 ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~~~~~~~~~ 140 (359)
++|.+|+|||||+|+|++......+..+++|.+.........+ ...+.++||||+.........
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~Dt~g~~~~~~~~~~ 64 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELGP----------------LGPVVLIDTPGIDEAGGLGRE 64 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEecC----------------CCcEEEEECCCCCccccchhh
Confidence 5899999999999999976666688888888887776665542 246999999999776554333
Q ss_pred hhhhHhhHHHhcccceEEeecCCC----------------ccEEEeCCcccCCcchHHHHhhhhhccHHHHHHHHHHHhh
Q 018241 141 LGNKFLSHIREVDSILQVVRCFED----------------NDIVHVNGKVDPKSDVDVINLELVFSDLDQIEKRMEKLKK 204 (359)
Q Consensus 141 ~~~~~l~~i~~aD~il~Vvd~~~~----------------~~v~~v~nk~d~~~~~~~i~~el~~~d~~~l~~~~~~~~~ 204 (359)
....+...++.+|++++|+|+... .+++.+.||+|...+........ ..........
T Consensus 65 ~~~~~~~~~~~~d~il~v~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~-------~~~~~~~~~~ 137 (163)
T cd00880 65 REELARRVLERADLILFVVDADLRADEEEEKLLELLRERGKPVLLVLNKIDLLPEEEEEELLE-------LRLLILLLLL 137 (163)
T ss_pred HHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCeEEEEEEccccCChhhHHHHHH-------HHHhhccccc
Confidence 334566778999999999998873 35788899999775432211100 0000000000
Q ss_pred hccccccchhhHHHHHHHHHHHHHH
Q 018241 205 GKAKDSQSKLKEDAEKAALEKIQQA 229 (359)
Q Consensus 205 ~~~~~~~Sa~~~~~~~~ll~~i~~~ 229 (359)
......+|++.+.++.++++.+.+.
T Consensus 138 ~~~~~~~sa~~~~~v~~l~~~l~~~ 162 (163)
T cd00880 138 GLPVIAVSALTGEGIDELREALIEA 162 (163)
T ss_pred CCceEEEeeeccCCHHHHHHHHHhh
Confidence 1111456888888888888777654
No 80
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=99.49 E-value=2.4e-13 Score=121.65 Aligned_cols=150 Identities=13% Similarity=0.107 Sum_probs=91.6
Q ss_pred cEEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCCcCCCC
Q 018241 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGAS 136 (359)
Q Consensus 57 ~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~~~~~ 136 (359)
.+|+|+|.||||||||+|+++++.... ...|.++.+.....+.+++. ...+.+|||||+.+...
T Consensus 1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~-~~~pt~~~~~~~~~i~~~~~---------------~~~l~i~Dt~G~~~~~~ 64 (198)
T cd04142 1 VRVAVLGAPGVGKTAIVRQFLAQEFPE-EYIPTEHRRLYRPAVVLSGR---------------VYDLHILDVPNMQRYPG 64 (198)
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCCCc-ccCCccccccceeEEEECCE---------------EEEEEEEeCCCcccCCc
Confidence 489999999999999999999654432 23443332322223333321 24588999999865432
Q ss_pred c-CcchhhhHhhHHHhcccceEEeecCCC-----------------------ccEEEeCCcccCCcchHHHHhhhhhccH
Q 018241 137 Q-GEGLGNKFLSHIREVDSILQVVRCFED-----------------------NDIVHVNGKVDPKSDVDVINLELVFSDL 192 (359)
Q Consensus 137 ~-~~~~~~~~l~~i~~aD~il~Vvd~~~~-----------------------~~v~~v~nk~d~~~~~~~i~~el~~~d~ 192 (359)
. +..........+++||++++|+|+++. .+++.+.||.|...+. ....
T Consensus 65 ~~~~e~~~~~~~~~~~ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~~~-~~~~------- 136 (198)
T cd04142 65 TAGQEWMDPRFRGLRNSRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQRHR-FAPR------- 136 (198)
T ss_pred cchhHHHHHHHhhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECccccccc-cccH-------
Confidence 1 111112234557899999999998752 3578899999975431 1111
Q ss_pred HHHHHHHHHHhhhccccccchhhHHHHHHHHHHHHHHhc
Q 018241 193 DQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALM 231 (359)
Q Consensus 193 ~~l~~~~~~~~~~~~~~~~Sa~~~~~~~~ll~~i~~~L~ 231 (359)
+.++....+.. ......+||+.+.|+.++++.+.+..-
T Consensus 137 ~~~~~~~~~~~-~~~~~e~Sak~g~~v~~lf~~i~~~~~ 174 (198)
T cd04142 137 HVLSVLVRKSW-KCGYLECSAKYNWHILLLFKELLISAT 174 (198)
T ss_pred HHHHHHHHHhc-CCcEEEecCCCCCCHHHHHHHHHHHhh
Confidence 11111111111 111156799999999999988887664
No 81
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.49 E-value=1.2e-13 Score=122.69 Aligned_cols=148 Identities=18% Similarity=0.136 Sum_probs=92.9
Q ss_pred cEEEEEecCCCChhHHHHHHHhccccccCCCCceec-cceeEEEEeCCCccchhccccccccccCceEEEEecCCCcCCC
Q 018241 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTI-EPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA 135 (359)
Q Consensus 57 ~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~-~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~~~~ 135 (359)
.||+++|.+|||||||++++++... ....++.++. +.....+.+++. ..++.+|||||.....
T Consensus 1 ~Ki~vvG~~~vGKTSli~~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~---------------~~~~~i~Dt~G~~~~~ 64 (191)
T cd04112 1 FKVMLLGDSGVGKTCLLVRFKDGAF-LNGNFIATVGIDFRNKVVTVDGV---------------KVKLQIWDTAGQERFR 64 (191)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC-CccCcCCcccceeEEEEEEECCE---------------EEEEEEEeCCCcHHHH
Confidence 4899999999999999999995443 3333333332 222223444332 2468999999964322
Q ss_pred CcCcchhhhHhhHHHhcccceEEeecCC--------------------CccEEEeCCcccCCcchHHHHhhhhhccHHHH
Q 018241 136 SQGEGLGNKFLSHIREVDSILQVVRCFE--------------------DNDIVHVNGKVDPKSDVDVINLELVFSDLDQI 195 (359)
Q Consensus 136 ~~~~~~~~~~l~~i~~aD~il~Vvd~~~--------------------~~~v~~v~nk~d~~~~~~~i~~el~~~d~~~l 195 (359)
. .....++.+|++++|+|+++ +.+++.+.||.|...+...... +...+
T Consensus 65 ~-------~~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~~~~~-----~~~~l 132 (191)
T cd04112 65 S-------VTHAYYRDAHALLLLYDITNKASFDNIRAWLTEIKEYAQEDVVIMLLGNKADMSGERVVKRE-----DGERL 132 (191)
T ss_pred H-------hhHHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccchhccccCHH-----HHHHH
Confidence 2 23445688999999999875 2367889999996532111111 11111
Q ss_pred HHHHHHHhhhccccccchhhHHHHHHHHHHHHHHhcCCCCCC
Q 018241 196 EKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMDGKPAR 237 (359)
Q Consensus 196 ~~~~~~~~~~~~~~~~Sa~~~~~~~~ll~~i~~~L~~~~~~~ 237 (359)
.+. .. .....+||+.+.++.++++.+.+.+.+....+
T Consensus 133 ~~~---~~--~~~~e~Sa~~~~~v~~l~~~l~~~~~~~~~~~ 169 (191)
T cd04112 133 AKE---YG--VPFMETSAKTGLNVELAFTAVAKELKHRKYEQ 169 (191)
T ss_pred HHH---cC--CeEEEEeCCCCCCHHHHHHHHHHHHHHhcccc
Confidence 111 11 11146799999999999999999987654333
No 82
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.49 E-value=8.7e-14 Score=123.60 Aligned_cols=159 Identities=18% Similarity=0.243 Sum_probs=96.8
Q ss_pred cEEEEEecCCCChhHHHHHHHhc------cccccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCC
Q 018241 57 LRAGIVGLPNVGKSTLFNAVVEN------GKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAG 130 (359)
Q Consensus 57 ~~i~ivG~pn~GKSTL~n~L~~~------~~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG 130 (359)
++|+++|.+|+|||||+++|++. ........+++|++.....+.+...... .. ....+....++.+|||||
T Consensus 1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~i~DtpG 77 (192)
T cd01889 1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHL--RE-LINPGEENLQITLVDCPG 77 (192)
T ss_pred CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccc--cc-cccccccCceEEEEECCC
Confidence 47999999999999999999952 2222334556777766555554311000 00 000111145799999999
Q ss_pred CcCCCCcCcchhhhHhhHHHhcccceEEeecCCC----------------ccEEEeCCcccCCcchHHHHhhhhhccHHH
Q 018241 131 LVKGASQGEGLGNKFLSHIREVDSILQVVRCFED----------------NDIVHVNGKVDPKSDVDVINLELVFSDLDQ 194 (359)
Q Consensus 131 ~~~~~~~~~~~~~~~l~~i~~aD~il~Vvd~~~~----------------~~v~~v~nk~d~~~~~~~i~~el~~~d~~~ 194 (359)
... +...+...++.+|++++|+|+.+. .+++.+.||+|...... ... ..+.
T Consensus 78 ~~~-------~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~~~~~~~~~~iiv~NK~Dl~~~~~-~~~-----~~~~ 144 (192)
T cd01889 78 HAS-------LIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLVIGEILCKKLIVVLNKIDLIPEEE-RER-----KIEK 144 (192)
T ss_pred cHH-------HHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHHHHHHcCCCEEEEEECcccCCHHH-HHH-----HHHH
Confidence 842 344666777889999999998762 35778999999763211 110 0111
Q ss_pred HHHHHHH-H---h-hhccccccchhhHHHHHHHHHHHHHHhc
Q 018241 195 IEKRMEK-L---K-KGKAKDSQSKLKEDAEKAALEKIQQALM 231 (359)
Q Consensus 195 l~~~~~~-~---~-~~~~~~~~Sa~~~~~~~~ll~~i~~~L~ 231 (359)
+.+.+.. + . ......++||+++.++.++++.+...++
T Consensus 145 ~~~~l~~~~~~~~~~~~~vi~iSa~~g~gi~~L~~~l~~~~~ 186 (192)
T cd01889 145 MKKKLQKTLEKTRFKNSPIIPVSAKPGGGEAELGKDLNNLIV 186 (192)
T ss_pred HHHHHHHHHHhcCcCCCCEEEEeccCCCCHHHHHHHHHhccc
Confidence 1221111 1 0 1111257899999999998888877663
No 83
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=99.48 E-value=2.8e-13 Score=115.59 Aligned_cols=139 Identities=17% Similarity=0.138 Sum_probs=87.4
Q ss_pred cEEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCCcCCCC
Q 018241 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGAS 136 (359)
Q Consensus 57 ~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~~~~~ 136 (359)
+||+++|.||||||||+|+++++... ..++.|+.+.....+.+++. ...+.+|||||..+...
T Consensus 2 ~ki~iiG~~~vGKTsl~~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~---------------~~~~~i~Dt~G~~~~~~ 64 (162)
T cd04138 2 YKLVVVGAGGVGKSALTIQLIQNHFV--DEYDPTIEDSYRKQVVIDGE---------------TCLLDILDTAGQEEYSA 64 (162)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCc--CCcCCcchheEEEEEEECCE---------------EEEEEEEECCCCcchHH
Confidence 58999999999999999999965432 23333443332233333321 23578999999754332
Q ss_pred cCcchhhhHhhHHHhcccceEEeecCC---------------------CccEEEeCCcccCCcchHHHHhhhhhccHHHH
Q 018241 137 QGEGLGNKFLSHIREVDSILQVVRCFE---------------------DNDIVHVNGKVDPKSDVDVINLELVFSDLDQI 195 (359)
Q Consensus 137 ~~~~~~~~~l~~i~~aD~il~Vvd~~~---------------------~~~v~~v~nk~d~~~~~~~i~~el~~~d~~~l 195 (359)
.....++++|++++|+|.++ +.+++.+.||+|..... .... ..
T Consensus 65 -------l~~~~~~~~~~~i~v~~~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~-~~~~--------~~ 128 (162)
T cd04138 65 -------MRDQYMRTGEGFLCVFAINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLAART-VSSR--------QG 128 (162)
T ss_pred -------HHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccce-ecHH--------HH
Confidence 33456678999999999875 23578899999975421 1000 11
Q ss_pred HHHHHHHhhhccccccchhhHHHHHHHHHHHHHHh
Q 018241 196 EKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQAL 230 (359)
Q Consensus 196 ~~~~~~~~~~~~~~~~Sa~~~~~~~~ll~~i~~~L 230 (359)
........ .....+||+.+.++.++++.+.+.+
T Consensus 129 ~~~~~~~~--~~~~~~Sa~~~~gi~~l~~~l~~~~ 161 (162)
T cd04138 129 QDLAKSYG--IPYIETSAKTRQGVEEAFYTLVREI 161 (162)
T ss_pred HHHHHHhC--CeEEEecCCCCCCHHHHHHHHHHHh
Confidence 11111111 1114679999999999998887654
No 84
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=99.48 E-value=1.8e-13 Score=118.28 Aligned_cols=142 Identities=15% Similarity=0.148 Sum_probs=87.9
Q ss_pred cEEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCCcCCCC
Q 018241 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGAS 136 (359)
Q Consensus 57 ~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~~~~~ 136 (359)
+||+++|.+|||||||+|+++++.... ...|..+.+.....+..++. ...+.+|||||..+...
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~---------------~~~~~l~Dt~g~~~~~~ 65 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSFTS-AFVSTVGIDFKVKTVFRNDK---------------RVKLQIWDTAGQERYRT 65 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCC-CCCCceeeEEEEEEEEECCE---------------EEEEEEEECCChHHHHH
Confidence 689999999999999999999554321 11221211111111222210 25689999999754322
Q ss_pred cCcchhhhHhhHHHhcccceEEeecCC--------------------CccEEEeCCcccCCcchHHHHhhhhhccHHHHH
Q 018241 137 QGEGLGNKFLSHIREVDSILQVVRCFE--------------------DNDIVHVNGKVDPKSDVDVINLELVFSDLDQIE 196 (359)
Q Consensus 137 ~~~~~~~~~l~~i~~aD~il~Vvd~~~--------------------~~~v~~v~nk~d~~~~~~~i~~el~~~d~~~l~ 196 (359)
.....++++|++++|+|+++ +.+++.+.||+|...+..... +...
T Consensus 66 -------~~~~~~~~~~~~l~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~~--------~~~~ 130 (165)
T cd01865 66 -------ITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVILVGNKCDMEDERVVSS--------ERGR 130 (165)
T ss_pred -------HHHHHccCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCCEEEEEECcccCcccccCH--------HHHH
Confidence 33556789999999999876 235788999999754321100 1111
Q ss_pred HHHHHHhhhccccccchhhHHHHHHHHHHHHHHhc
Q 018241 197 KRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALM 231 (359)
Q Consensus 197 ~~~~~~~~~~~~~~~Sa~~~~~~~~ll~~i~~~L~ 231 (359)
+...... .....+||+.+.++.++++.+.+.+.
T Consensus 131 ~~~~~~~--~~~~~~Sa~~~~gv~~l~~~l~~~~~ 163 (165)
T cd01865 131 QLADQLG--FEFFEASAKENINVKQVFERLVDIIC 163 (165)
T ss_pred HHHHHcC--CEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 1111111 11146799999999999999888764
No 85
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=99.48 E-value=2e-13 Score=118.42 Aligned_cols=142 Identities=17% Similarity=0.124 Sum_probs=89.7
Q ss_pred cEEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCCcCCCC
Q 018241 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGAS 136 (359)
Q Consensus 57 ~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~~~~~ 136 (359)
++|++||.||||||||+|++++...... ..+..+.+.....+..... ...+.+|||||..+..
T Consensus 5 ~ki~vvG~~~vGKSsLl~~l~~~~~~~~-~~~t~~~~~~~~~~~~~~~---------------~~~~~i~Dt~G~~~~~- 67 (168)
T cd01866 5 FKYIIIGDTGVGKSCLLLQFTDKRFQPV-HDLTIGVEFGARMITIDGK---------------QIKLQIWDTAGQESFR- 67 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCC-CCCccceeEEEEEEEECCE---------------EEEEEEEECCCcHHHH-
Confidence 7999999999999999999995543322 2232333333334444321 2468999999964322
Q ss_pred cCcchhhhHhhHHHhcccceEEeecCC--------------------CccEEEeCCcccCCcchHHHHhhhhhccHHHHH
Q 018241 137 QGEGLGNKFLSHIREVDSILQVVRCFE--------------------DNDIVHVNGKVDPKSDVDVINLELVFSDLDQIE 196 (359)
Q Consensus 137 ~~~~~~~~~l~~i~~aD~il~Vvd~~~--------------------~~~v~~v~nk~d~~~~~~~i~~el~~~d~~~l~ 196 (359)
......++.+|++++|+|+++ +.+++.+.||.|....... ..+...
T Consensus 68 ------~~~~~~~~~~d~il~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~--------~~~~~~ 133 (168)
T cd01866 68 ------SITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSNSNMTIMLIGNKCDLESRREV--------SYEEGE 133 (168)
T ss_pred ------HHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccCC--------CHHHHH
Confidence 234556688999999999876 2357889999997632211 011111
Q ss_pred HHHHHHhhhccccccchhhHHHHHHHHHHHHHHhc
Q 018241 197 KRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALM 231 (359)
Q Consensus 197 ~~~~~~~~~~~~~~~Sa~~~~~~~~ll~~i~~~L~ 231 (359)
...... ......+|++.+.++.+++..+.+.+.
T Consensus 134 ~~~~~~--~~~~~e~Sa~~~~~i~~~~~~~~~~~~ 166 (168)
T cd01866 134 AFAKEH--GLIFMETSAKTASNVEEAFINTAKEIY 166 (168)
T ss_pred HHHHHc--CCEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 111111 111256889999999999988877763
No 86
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.47 E-value=2e-13 Score=117.79 Aligned_cols=132 Identities=17% Similarity=0.182 Sum_probs=84.1
Q ss_pred EEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCCcCCCCc
Q 018241 58 RAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGASQ 137 (359)
Q Consensus 58 ~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~~~~~~ 137 (359)
+|+++|+||||||||+|+|+|.... . ...+.+.+.. . .+|||||+.....
T Consensus 3 ~i~~iG~~~~GKstl~~~l~~~~~~-----~-----~~~~~v~~~~-----------------~--~~iDtpG~~~~~~- 52 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQGNYTL-----A-----RKTQAVEFND-----------------K--GDIDTPGEYFSHP- 52 (158)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCcc-----C-----ccceEEEECC-----------------C--CcccCCccccCCH-
Confidence 7999999999999999999954311 0 1222233321 1 2699999854332
Q ss_pred CcchhhhHhhHHHhcccceEEeecCCC--------------ccEEEeCCcccCCcchHHHHhhhhhccHHHHHHHHHHHh
Q 018241 138 GEGLGNKFLSHIREVDSILQVVRCFED--------------NDIVHVNGKVDPKSDVDVINLELVFSDLDQIEKRMEKLK 203 (359)
Q Consensus 138 ~~~~~~~~l~~i~~aD~il~Vvd~~~~--------------~~v~~v~nk~d~~~~~~~i~~el~~~d~~~l~~~~~~~~ 203 (359)
.+.......++.||++++|+|+++. .+++.+.||+|... .. .+.+........
T Consensus 53 --~~~~~~~~~~~~ad~il~v~d~~~~~s~~~~~~~~~~~~~~ii~v~nK~Dl~~-~~----------~~~~~~~~~~~~ 119 (158)
T PRK15467 53 --RWYHALITTLQDVDMLIYVHGANDPESRLPAGLLDIGVSKRQIAVISKTDMPD-AD----------VAATRKLLLETG 119 (158)
T ss_pred --HHHHHHHHHHhcCCEEEEEEeCCCcccccCHHHHhccCCCCeEEEEEccccCc-cc----------HHHHHHHHHHcC
Confidence 1233445667899999999999753 24678889998532 11 111122122211
Q ss_pred hhccccccchhhHHHHHHHHHHHHHHhcC
Q 018241 204 KGKAKDSQSKLKEDAEKAALEKIQQALMD 232 (359)
Q Consensus 204 ~~~~~~~~Sa~~~~~~~~ll~~i~~~L~~ 232 (359)
...+...+||+++.++.++++.+.+.+.+
T Consensus 120 ~~~p~~~~Sa~~g~gi~~l~~~l~~~~~~ 148 (158)
T PRK15467 120 FEEPIFELNSHDPQSVQQLVDYLASLTKQ 148 (158)
T ss_pred CCCCEEEEECCCccCHHHHHHHHHHhchh
Confidence 11122568999999999999999888853
No 87
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.47 E-value=5e-14 Score=127.00 Aligned_cols=97 Identities=19% Similarity=0.172 Sum_probs=68.5
Q ss_pred EEEEEecCCCChhHHHHHHHhccccccCC------------------------------CCceeccceeEEEEeCCCccc
Q 018241 58 RAGIVGLPNVGKSTLFNAVVENGKAQAAN------------------------------FPFCTIEPNVGIVAVPDPRLH 107 (359)
Q Consensus 58 ~i~ivG~pn~GKSTL~n~L~~~~~~~~~~------------------------------~p~tT~~~~~g~~~~~~~r~~ 107 (359)
+|+|+|++|+|||||+|+|+....+..+. ..++|+++....+...
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~----- 75 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTP----- 75 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecC-----
Confidence 58999999999999999998654443311 1445555554444333
Q ss_pred hhccccccccccCceEEEEecCCCcCCCCcCcchhhhHhhHHHhcccceEEeecCCC-----------------ccEEEe
Q 018241 108 VLSGLSKSQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFED-----------------NDIVHV 170 (359)
Q Consensus 108 ~l~~~~~~~~~~~~~i~lvDtpG~~~~~~~~~~~~~~~l~~i~~aD~il~Vvd~~~~-----------------~~v~~v 170 (359)
+.++.|+||||+.++. ......++.+|++++|+|+.+. ++++.+
T Consensus 76 ------------~~~~~liDTpG~~~~~-------~~~~~~~~~ad~~llVvD~~~~~~~~~~~~~~~~~~~~~~~iIvv 136 (208)
T cd04166 76 ------------KRKFIIADTPGHEQYT-------RNMVTGASTADLAILLVDARKGVLEQTRRHSYILSLLGIRHVVVA 136 (208)
T ss_pred ------------CceEEEEECCcHHHHH-------HHHHHhhhhCCEEEEEEECCCCccHhHHHHHHHHHHcCCCcEEEE
Confidence 4679999999985332 2455678899999999999763 235667
Q ss_pred CCcccCCc
Q 018241 171 NGKVDPKS 178 (359)
Q Consensus 171 ~nk~d~~~ 178 (359)
.||+|...
T Consensus 137 iNK~D~~~ 144 (208)
T cd04166 137 VNKMDLVD 144 (208)
T ss_pred EEchhccc
Confidence 89999753
No 88
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.47 E-value=9.9e-14 Score=122.54 Aligned_cols=144 Identities=17% Similarity=0.200 Sum_probs=93.7
Q ss_pred CCcEEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCCcCC
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~~~ 134 (359)
...+|+++|.+|||||||+|+++++..... .+|..++.+.+.+. +.++.++||||....
T Consensus 16 ~~~~i~ivG~~~~GKTsli~~l~~~~~~~~----~~t~~~~~~~~~~~-----------------~~~~~~~D~~G~~~~ 74 (184)
T smart00178 16 KHAKILFLGLDNAGKTTLLHMLKNDRLAQH----QPTQHPTSEELAIG-----------------NIKFTTFDLGGHQQA 74 (184)
T ss_pred ccCEEEEECCCCCCHHHHHHHHhcCCCccc----CCccccceEEEEEC-----------------CEEEEEEECCCCHHH
Confidence 348999999999999999999996543322 23555666655554 357999999998543
Q ss_pred CCcCcchhhhHhhHHHhcccceEEeecCCC---------------------ccEEEeCCcccCCc--chHHHHhhhhhcc
Q 018241 135 ASQGEGLGNKFLSHIREVDSILQVVRCFED---------------------NDIVHVNGKVDPKS--DVDVINLELVFSD 191 (359)
Q Consensus 135 ~~~~~~~~~~~l~~i~~aD~il~Vvd~~~~---------------------~~v~~v~nk~d~~~--~~~~i~~el~~~d 191 (359)
.. .+..+++++|++++|+|+++. .+++.+.||.|... +.+.+.+.+.+.+
T Consensus 75 ~~-------~~~~~~~~ad~ii~vvD~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~l~l~~ 147 (184)
T smart00178 75 RR-------LWKDYFPEVNGIVYLVDAYDKERFAESKRELDALLSDEELATVPFLILGNKIDAPYAASEDELRYALGLTN 147 (184)
T ss_pred HH-------HHHHHhCCCCEEEEEEECCcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCCCHHHHHHHcCCCc
Confidence 22 345667899999999998762 35889999999643 2334444333322
Q ss_pred HHHHHHHHHHHh-hhccccccchhhHHHHHHHHHHHHHH
Q 018241 192 LDQIEKRMEKLK-KGKAKDSQSKLKEDAEKAALEKIQQA 229 (359)
Q Consensus 192 ~~~l~~~~~~~~-~~~~~~~~Sa~~~~~~~~ll~~i~~~ 229 (359)
... ...... +......+||+.+.++.++++.+.+.
T Consensus 148 ~~~---~~~~~~~~~~~i~~~Sa~~~~g~~~~~~wl~~~ 183 (184)
T smart00178 148 TTG---SKGKVGVRPLEVFMCSVVRRMGYGEGFKWLSQY 183 (184)
T ss_pred ccc---cccccCCceeEEEEeecccCCChHHHHHHHHhh
Confidence 110 000000 01111577899999988888877643
No 89
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=99.47 E-value=3.3e-13 Score=115.99 Aligned_cols=141 Identities=16% Similarity=0.117 Sum_probs=89.7
Q ss_pred cEEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCCcCCCC
Q 018241 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGAS 136 (359)
Q Consensus 57 ~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~~~~~ 136 (359)
.||+++|.||||||||+|++++.... ..++.++.+...-...+++. ...+.+|||||..+...
T Consensus 1 ~ki~v~G~~~~GKTsli~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~---------------~~~l~i~Dt~g~~~~~~ 63 (164)
T smart00173 1 YKLVVLGSGGVGKSALTIQFVQGHFV--DDYDPTIEDSYRKQIEIDGE---------------VCLLDILDTAGQEEFSA 63 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCC--cccCCchhhhEEEEEEECCE---------------EEEEEEEECCCcccchH
Confidence 38999999999999999999955432 23333443332222223221 24688999999865432
Q ss_pred cCcchhhhHhhHHHhcccceEEeecCC---------------------CccEEEeCCcccCCcchHHHHhhhhhccHHHH
Q 018241 137 QGEGLGNKFLSHIREVDSILQVVRCFE---------------------DNDIVHVNGKVDPKSDVDVINLELVFSDLDQI 195 (359)
Q Consensus 137 ~~~~~~~~~l~~i~~aD~il~Vvd~~~---------------------~~~v~~v~nk~d~~~~~~~i~~el~~~d~~~l 195 (359)
.....++.+|++++|+|+.+ +.+++.+.||+|...+..... +..
T Consensus 64 -------~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii~v~nK~Dl~~~~~~~~--------~~~ 128 (164)
T smart00173 64 -------MRDQYMRTGEGFLLVYSITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLESERVVST--------EEG 128 (164)
T ss_pred -------HHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceEcH--------HHH
Confidence 23345688999999999876 236788999999754321110 111
Q ss_pred HHHHHHHhhhccccccchhhHHHHHHHHHHHHHHhc
Q 018241 196 EKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALM 231 (359)
Q Consensus 196 ~~~~~~~~~~~~~~~~Sa~~~~~~~~ll~~i~~~L~ 231 (359)
........ .....+||+.+.++.++++.+.+.+.
T Consensus 129 ~~~~~~~~--~~~~~~Sa~~~~~i~~l~~~l~~~~~ 162 (164)
T smart00173 129 KELARQWG--CPFLETSAKERVNVDEAFYDLVREIR 162 (164)
T ss_pred HHHHHHcC--CEEEEeecCCCCCHHHHHHHHHHHHh
Confidence 11111111 11257899999999999999988764
No 90
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.47 E-value=1.6e-13 Score=118.38 Aligned_cols=143 Identities=14% Similarity=0.104 Sum_probs=87.1
Q ss_pred CcEEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCCcCCC
Q 018241 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA 135 (359)
Q Consensus 56 ~~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~~~~ 135 (359)
.+||+++|.+|||||||++++.++...... .+..+.+.....+.+++. ..++.+|||||.....
T Consensus 3 ~~kv~vvG~~~~GKTsli~~l~~~~~~~~~-~~t~~~~~~~~~~~~~~~---------------~~~l~i~D~~G~~~~~ 66 (165)
T cd01864 3 LFKIILIGDSNVGKTCVVQRFKSGTFSERQ-GNTIGVDFTMKTLEIEGK---------------RVKLQIWDTAGQERFR 66 (165)
T ss_pred eeEEEEECCCCCCHHHHHHHHhhCCCcccC-CCccceEEEEEEEEECCE---------------EEEEEEEECCChHHHH
Confidence 479999999999999999999854432211 111112222223333321 1468999999964322
Q ss_pred CcCcchhhhHhhHHHhcccceEEeecCCC--------------------ccEEEeCCcccCCcchHHHHhhhhhccHHHH
Q 018241 136 SQGEGLGNKFLSHIREVDSILQVVRCFED--------------------NDIVHVNGKVDPKSDVDVINLELVFSDLDQI 195 (359)
Q Consensus 136 ~~~~~~~~~~l~~i~~aD~il~Vvd~~~~--------------------~~v~~v~nk~d~~~~~~~i~~el~~~d~~~l 195 (359)
......++++|++++|+|+++. .+++.+.||+|........ ..+ .
T Consensus 67 -------~~~~~~~~~~d~~llv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~-----~~~---~ 131 (165)
T cd01864 67 -------TITQSYYRSANGAIIAYDITRRSSFESVPHWIEEVEKYGASNVVLLLIGNKCDLEEQREVL-----FEE---A 131 (165)
T ss_pred -------HHHHHHhccCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccccccC-----HHH---H
Confidence 1334566889999999998772 2478899999976432111 111 1
Q ss_pred HHHHHHHhhhccccccchhhHHHHHHHHHHHHHHh
Q 018241 196 EKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQAL 230 (359)
Q Consensus 196 ~~~~~~~~~~~~~~~~Sa~~~~~~~~ll~~i~~~L 230 (359)
........ ......+||+++.++.++++.+.+.|
T Consensus 132 ~~~~~~~~-~~~~~e~Sa~~~~~v~~~~~~l~~~l 165 (165)
T cd01864 132 CTLAEKNG-MLAVLETSAKESQNVEEAFLLMATEL 165 (165)
T ss_pred HHHHHHcC-CcEEEEEECCCCCCHHHHHHHHHHhC
Confidence 11111111 11114678999999999998887654
No 91
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=99.47 E-value=2.1e-13 Score=118.05 Aligned_cols=142 Identities=15% Similarity=0.113 Sum_probs=89.5
Q ss_pred CcEEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCCcCCC
Q 018241 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA 135 (359)
Q Consensus 56 ~~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~~~~ 135 (359)
..||+++|.||||||||+|++++... .....|..+.+.....+.+++. ...+.+|||||.....
T Consensus 3 ~~ki~vvG~~~~GKSsl~~~~~~~~f-~~~~~~t~~~~~~~~~~~~~~~---------------~~~l~l~D~~g~~~~~ 66 (167)
T cd01867 3 LFKLLLIGDSGVGKSCLLLRFSEDSF-NPSFISTIGIDFKIRTIELDGK---------------KIKLQIWDTAGQERFR 66 (167)
T ss_pred ceEEEEECCCCCCHHHHHHHHhhCcC-CcccccCccceEEEEEEEECCE---------------EEEEEEEeCCchHHHH
Confidence 47999999999999999999995443 2222332222222233333321 2468999999975432
Q ss_pred CcCcchhhhHhhHHHhcccceEEeecCC--------------------CccEEEeCCcccCCcchHHHHhhhhhccHHHH
Q 018241 136 SQGEGLGNKFLSHIREVDSILQVVRCFE--------------------DNDIVHVNGKVDPKSDVDVINLELVFSDLDQI 195 (359)
Q Consensus 136 ~~~~~~~~~~l~~i~~aD~il~Vvd~~~--------------------~~~v~~v~nk~d~~~~~~~i~~el~~~d~~~l 195 (359)
. .....+++||++++|+|+.+ +.+++.+.||.|...+..... +..
T Consensus 67 ~-------~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~--------~~~ 131 (167)
T cd01867 67 T-------ITTAYYRGAMGIILVYDITDEKSFENIRNWMRNIEEHASEDVERMLVGNKCDMEEKRVVSK--------EEG 131 (167)
T ss_pred H-------HHHHHhCCCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccccCCCH--------HHH
Confidence 2 33456789999999999875 236788999999764321111 111
Q ss_pred HHHHHHHhhhccccccchhhHHHHHHHHHHHHHHh
Q 018241 196 EKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQAL 230 (359)
Q Consensus 196 ~~~~~~~~~~~~~~~~Sa~~~~~~~~ll~~i~~~L 230 (359)
........ .....+||+.+.++.++++.+.+.+
T Consensus 132 ~~~~~~~~--~~~~~~Sa~~~~~v~~~~~~i~~~~ 164 (167)
T cd01867 132 EALADEYG--IKFLETSAKANINVEEAFFTLAKDI 164 (167)
T ss_pred HHHHHHcC--CEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 11111111 1115789999999999999888776
No 92
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=99.47 E-value=3.8e-13 Score=115.82 Aligned_cols=140 Identities=16% Similarity=0.087 Sum_probs=90.0
Q ss_pred cEEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCCcCCCC
Q 018241 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGAS 136 (359)
Q Consensus 57 ~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~~~~~ 136 (359)
.||+++|.+|||||||+++++.+.. +..++.|+.+.....+.+.+. ...+.+|||||......
T Consensus 2 ~ki~~~G~~~~GKTsli~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~---------------~~~l~i~Dt~G~~~~~~ 64 (164)
T cd04175 2 YKLVVLGSGGVGKSALTVQFVQGIF--VEKYDPTIEDSYRKQVEVDGQ---------------QCMLEILDTAGTEQFTA 64 (164)
T ss_pred cEEEEECCCCCCHHHHHHHHHhCCC--CcccCCcchheEEEEEEECCE---------------EEEEEEEECCCcccchh
Confidence 6899999999999999999984432 234455554433333333321 23578999999865443
Q ss_pred cCcchhhhHhhHHHhcccceEEeecCC---------------------CccEEEeCCcccCCcchHHHHhhhhhccHHHH
Q 018241 137 QGEGLGNKFLSHIREVDSILQVVRCFE---------------------DNDIVHVNGKVDPKSDVDVINLELVFSDLDQI 195 (359)
Q Consensus 137 ~~~~~~~~~l~~i~~aD~il~Vvd~~~---------------------~~~v~~v~nk~d~~~~~~~i~~el~~~d~~~l 195 (359)
.....++.+|++++|+|.++ +.|++.+.||+|...+... .. +..
T Consensus 65 -------~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~-~~-------~~~ 129 (164)
T cd04175 65 -------MRDLYMKNGQGFVLVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVV-GK-------EQG 129 (164)
T ss_pred -------HHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcchhccEE-cH-------HHH
Confidence 33446688999999999865 2368899999996532111 00 011
Q ss_pred HHHHHHHhhhccccccchhhHHHHHHHHHHHHHHh
Q 018241 196 EKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQAL 230 (359)
Q Consensus 196 ~~~~~~~~~~~~~~~~Sa~~~~~~~~ll~~i~~~L 230 (359)
+....... .....+||+.+.++.++++.+.+.+
T Consensus 130 ~~~~~~~~--~~~~~~Sa~~~~~v~~~~~~l~~~l 162 (164)
T cd04175 130 QNLARQWG--CAFLETSAKAKINVNEIFYDLVRQI 162 (164)
T ss_pred HHHHHHhC--CEEEEeeCCCCCCHHHHHHHHHHHh
Confidence 11111111 1114679999999999999988776
No 93
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=99.46 E-value=3e-13 Score=116.08 Aligned_cols=141 Identities=17% Similarity=0.172 Sum_probs=86.8
Q ss_pred cEEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCCcCCCC
Q 018241 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGAS 136 (359)
Q Consensus 57 ~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~~~~~ 136 (359)
+||+++|.||||||||+|+++++.... ...|..+.+.....+.+.+. ...+.+|||||......
T Consensus 1 ~ki~~vG~~~vGKTsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~---------------~~~l~i~Dt~G~~~~~~ 64 (168)
T cd04119 1 IKVISMGNSGVGKSCIIKRYCEGRFVS-KYLPTIGIDYGVKKVSVRNK---------------EVRVNFFDLSGHPEYLE 64 (168)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCC-CCCCccceeEEEEEEEECCe---------------EEEEEEEECCccHHHHH
Confidence 489999999999999999999554322 22232222222223333321 35689999999843321
Q ss_pred cCcchhhhHhhHHHhcccceEEeecCC-------------------------CccEEEeCCcccCCcchHHHHhhhhhcc
Q 018241 137 QGEGLGNKFLSHIREVDSILQVVRCFE-------------------------DNDIVHVNGKVDPKSDVDVINLELVFSD 191 (359)
Q Consensus 137 ~~~~~~~~~l~~i~~aD~il~Vvd~~~-------------------------~~~v~~v~nk~d~~~~~~~i~~el~~~d 191 (359)
.....++.+|++++|+|.++ ..+++.+.||.|...+.....
T Consensus 65 -------~~~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~------- 130 (168)
T cd04119 65 -------VRNEFYKDTQGVLLVYDVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRAVSE------- 130 (168)
T ss_pred -------HHHHHhccCCEEEEEEECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhcccccccCH-------
Confidence 22344578999999999874 135788999999753211101
Q ss_pred HHHHHHHHHHHhhhccccccchhhHHHHHHHHHHHHHHh
Q 018241 192 LDQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQAL 230 (359)
Q Consensus 192 ~~~l~~~~~~~~~~~~~~~~Sa~~~~~~~~ll~~i~~~L 230 (359)
+.......... .....+||+.+.++.++++.+.+.+
T Consensus 131 -~~~~~~~~~~~--~~~~~~Sa~~~~gi~~l~~~l~~~l 166 (168)
T cd04119 131 -DEGRLWAESKG--FKYFETSACTGEGVNEMFQTLFSSI 166 (168)
T ss_pred -HHHHHHHHHcC--CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 11111111111 1114678999999999998887655
No 94
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.46 E-value=4.4e-13 Score=115.89 Aligned_cols=143 Identities=19% Similarity=0.144 Sum_probs=87.5
Q ss_pred cEEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCCcCCCC
Q 018241 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGAS 136 (359)
Q Consensus 57 ~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~~~~~ 136 (359)
+||+++|.+|||||||+|++++... .....+..+.+.....+.+++. ..++.+|||||......
T Consensus 1 ~ki~viG~~~~GKSsl~~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~---------------~~~~~~~D~~g~~~~~~ 64 (172)
T cd01862 1 LKVIILGDSGVGKTSLMNQYVNKKF-SNQYKATIGADFLTKEVTVDDK---------------LVTLQIWDTAGQERFQS 64 (172)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC-CcCcCCccceEEEEEEEEECCE---------------EEEEEEEeCCChHHHHh
Confidence 4899999999999999999995432 2222222222232333333321 24688999999753322
Q ss_pred cCcchhhhHhhHHHhcccceEEeecCC------------------------CccEEEeCCcccCCcchHHHHhhhhhccH
Q 018241 137 QGEGLGNKFLSHIREVDSILQVVRCFE------------------------DNDIVHVNGKVDPKSDVDVINLELVFSDL 192 (359)
Q Consensus 137 ~~~~~~~~~l~~i~~aD~il~Vvd~~~------------------------~~~v~~v~nk~d~~~~~~~i~~el~~~d~ 192 (359)
.....++.+|++++|+|+.+ +.+++.+.||+|...+... ..
T Consensus 65 -------~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~--------~~ 129 (172)
T cd01862 65 -------LGVAFYRGADCCVLVYDVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEEKRQV--------ST 129 (172)
T ss_pred -------HHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECccccccccc--------CH
Confidence 33456788999999999865 2356788899997631111 01
Q ss_pred HHHHHHHHHHhhhccccccchhhHHHHHHHHHHHHHHhc
Q 018241 193 DQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALM 231 (359)
Q Consensus 193 ~~l~~~~~~~~~~~~~~~~Sa~~~~~~~~ll~~i~~~L~ 231 (359)
+.+....... .......+|++.+.++.++++.+.+.+-
T Consensus 130 ~~~~~~~~~~-~~~~~~~~Sa~~~~gv~~l~~~i~~~~~ 167 (172)
T cd01862 130 KKAQQWCQSN-GNIPYFETSAKEAINVEQAFETIARKAL 167 (172)
T ss_pred HHHHHHHHHc-CCceEEEEECCCCCCHHHHHHHHHHHHH
Confidence 1112211111 1011146788999999999988877654
No 95
>PLN03118 Rab family protein; Provisional
Probab=99.45 E-value=4.9e-13 Score=120.61 Aligned_cols=145 Identities=19% Similarity=0.141 Sum_probs=91.5
Q ss_pred CCcEEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCCcCC
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~~~ 134 (359)
..+||+|+|.+|||||||+++|+++.....++..+. +.....+.+++. ..++.||||||...+
T Consensus 13 ~~~kv~ivG~~~vGKTsli~~l~~~~~~~~~~t~~~--~~~~~~~~~~~~---------------~~~l~l~Dt~G~~~~ 75 (211)
T PLN03118 13 LSFKILLIGDSGVGKSSLLVSFISSSVEDLAPTIGV--DFKIKQLTVGGK---------------RLKLTIWDTAGQERF 75 (211)
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCCCCCcCCCcee--EEEEEEEEECCE---------------EEEEEEEECCCchhh
Confidence 458999999999999999999996654333222221 222222333321 246899999998654
Q ss_pred CCcCcchhhhHhhHHHhcccceEEeecCCC----------------------ccEEEeCCcccCCcchHHHHhhhhhccH
Q 018241 135 ASQGEGLGNKFLSHIREVDSILQVVRCFED----------------------NDIVHVNGKVDPKSDVDVINLELVFSDL 192 (359)
Q Consensus 135 ~~~~~~~~~~~l~~i~~aD~il~Vvd~~~~----------------------~~v~~v~nk~d~~~~~~~i~~el~~~d~ 192 (359)
.. .....++++|++++|+|+++. .+++.+.||.|....... ..+
T Consensus 76 ~~-------~~~~~~~~~d~~vlv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~i-~~~------ 141 (211)
T PLN03118 76 RT-------LTSSYYRNAQGIILVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRESERDV-SRE------ 141 (211)
T ss_pred HH-------HHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCcc-CHH------
Confidence 33 234567899999999998762 246778899996533211 110
Q ss_pred HHHHHHHHHHhhhccccccchhhHHHHHHHHHHHHHHhcCC
Q 018241 193 DQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMDG 233 (359)
Q Consensus 193 ~~l~~~~~~~~~~~~~~~~Sa~~~~~~~~ll~~i~~~L~~~ 233 (359)
......... . .....+||+.+.++.++++.+...+.+.
T Consensus 142 -~~~~~~~~~-~-~~~~e~SAk~~~~v~~l~~~l~~~~~~~ 179 (211)
T PLN03118 142 -EGMALAKEH-G-CLFLECSAKTRENVEQCFEELALKIMEV 179 (211)
T ss_pred -HHHHHHHHc-C-CEEEEEeCCCCCCHHHHHHHHHHHHHhh
Confidence 011111110 0 1114678999999999999999888654
No 96
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.45 E-value=3.9e-13 Score=119.58 Aligned_cols=98 Identities=21% Similarity=0.207 Sum_probs=67.4
Q ss_pred cEEEEEecCCCChhHHHHHHHhccccccCCC---------------CceeccceeEEEEeCCCccchhccccccccccCc
Q 018241 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANF---------------PFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPA 121 (359)
Q Consensus 57 ~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~---------------p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~ 121 (359)
.+|+++|.+|+|||||+|+|++........+ .++|.+.....+... ..
T Consensus 3 r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~-----------------~~ 65 (194)
T cd01891 3 RNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYK-----------------DT 65 (194)
T ss_pred cEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEEC-----------------CE
Confidence 4899999999999999999995322211111 233333332223222 45
Q ss_pred eEEEEecCCCcCCCCcCcchhhhHhhHHHhcccceEEeecCCC----------------ccEEEeCCcccCCc
Q 018241 122 SVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFED----------------NDIVHVNGKVDPKS 178 (359)
Q Consensus 122 ~i~lvDtpG~~~~~~~~~~~~~~~l~~i~~aD~il~Vvd~~~~----------------~~v~~v~nk~d~~~ 178 (359)
.+.+|||||..++.. .....++.+|++++|+|+++. .+++.+.||+|...
T Consensus 66 ~~~l~DtpG~~~~~~-------~~~~~~~~~d~~ilV~d~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~ 131 (194)
T cd01891 66 KINIVDTPGHADFGG-------EVERVLSMVDGVLLLVDASEGPMPQTRFVLKKALELGLKPIVVINKIDRPD 131 (194)
T ss_pred EEEEEECCCcHHHHH-------HHHHHHHhcCEEEEEEECCCCccHHHHHHHHHHHHcCCCEEEEEECCCCCC
Confidence 799999999865433 455677999999999998762 25788999999753
No 97
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.45 E-value=1.7e-13 Score=119.73 Aligned_cols=135 Identities=19% Similarity=0.193 Sum_probs=87.2
Q ss_pred CcEEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCCcCCC
Q 018241 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA 135 (359)
Q Consensus 56 ~~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~~~~ 135 (359)
..+|+++|.+|||||||+++++++..... ..|...+...+.+. ..++.+|||||.....
T Consensus 15 ~~kv~~~G~~~~GKTsl~~~l~~~~~~~~----~~t~~~~~~~~~~~-----------------~~~~~l~D~~G~~~~~ 73 (174)
T cd04153 15 EYKVIIVGLDNAGKTTILYQFLLGEVVHT----SPTIGSNVEEIVYK-----------------NIRFLMWDIGGQESLR 73 (174)
T ss_pred ccEEEEECCCCCCHHHHHHHHccCCCCCc----CCccccceEEEEEC-----------------CeEEEEEECCCCHHHH
Confidence 47999999999999999999985554322 22333333444433 3579999999985332
Q ss_pred CcCcchhhhHhhHHHhcccceEEeecCCC---------------------ccEEEeCCcccCCcc--hHHHHhhhhhccH
Q 018241 136 SQGEGLGNKFLSHIREVDSILQVVRCFED---------------------NDIVHVNGKVDPKSD--VDVINLELVFSDL 192 (359)
Q Consensus 136 ~~~~~~~~~~l~~i~~aD~il~Vvd~~~~---------------------~~v~~v~nk~d~~~~--~~~i~~el~~~d~ 192 (359)
..+..+++.+|++++|+|+++. .+++.+.||.|.... .+.+..++.+...
T Consensus 74 -------~~~~~~~~~~d~vi~V~D~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~~~~~~~i~~~l~~~~~ 146 (174)
T cd04153 74 -------SSWNTYYTNTDAVILVIDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKGAMTPAEISESLGLTSI 146 (174)
T ss_pred -------HHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCCCCCCCHHHHHHHhCcccc
Confidence 2445667899999999999752 357889999996532 1222221111110
Q ss_pred HHHHHHHHHHhhhccccccchhhHHHHHHHHHHHH
Q 018241 193 DQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQ 227 (359)
Q Consensus 193 ~~l~~~~~~~~~~~~~~~~Sa~~~~~~~~ll~~i~ 227 (359)
. ........+||+++.++.++++.+.
T Consensus 147 ~---------~~~~~~~~~SA~~g~gi~e~~~~l~ 172 (174)
T cd04153 147 R---------DHTWHIQGCCALTGEGLPEGLDWIA 172 (174)
T ss_pred c---------CCceEEEecccCCCCCHHHHHHHHh
Confidence 0 0001114689999999888887764
No 98
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.45 E-value=2.2e-13 Score=140.54 Aligned_cols=139 Identities=24% Similarity=0.346 Sum_probs=97.4
Q ss_pred ecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCCcCCCCc--Ccc
Q 018241 63 GLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGASQ--GEG 140 (359)
Q Consensus 63 G~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~~~~~~--~~~ 140 (359)
|.||||||||+|+|+| ....++++|++|++...+.+.+++ .++.+|||||..+.... .+.
T Consensus 1 G~pNvGKSSL~N~Ltg-~~~~v~n~pG~Tv~~~~~~i~~~~-----------------~~i~lvDtPG~~~~~~~s~~e~ 62 (591)
T TIGR00437 1 GNPNVGKSTLFNALTG-ANQTVGNWPGVTVEKKEGKLGFQG-----------------EDIEIVDLPGIYSLTTFSLEEE 62 (591)
T ss_pred CCCCCCHHHHHHHHhC-CCCeecCCCCeEEEEEEEEEEECC-----------------eEEEEEECCCccccCccchHHH
Confidence 8999999999999995 456899999999999998887763 56999999999765432 222
Q ss_pred hhhhHhhHHHhcccceEEeecCC--------------CccEEEeCCcccCCcchHHHHhhhhhccHHHHHHHHHHHhhhc
Q 018241 141 LGNKFLSHIREVDSILQVVRCFE--------------DNDIVHVNGKVDPKSDVDVINLELVFSDLDQIEKRMEKLKKGK 206 (359)
Q Consensus 141 ~~~~~l~~i~~aD~il~Vvd~~~--------------~~~v~~v~nk~d~~~~~~~i~~el~~~d~~~l~~~~~~~~~~~ 206 (359)
+.+.++. .+.+|++++|+|+++ +.+++.+.||+|..++... ..+.+.+++.. . .
T Consensus 63 v~~~~l~-~~~aDvvI~VvDat~ler~l~l~~ql~~~~~PiIIVlNK~Dl~~~~~i------~~d~~~L~~~l----g-~ 130 (591)
T TIGR00437 63 VARDYLL-NEKPDLVVNVVDASNLERNLYLTLQLLELGIPMILALNLVDEAEKKGI------RIDEEKLEERL----G-V 130 (591)
T ss_pred HHHHHHh-hcCCCEEEEEecCCcchhhHHHHHHHHhcCCCEEEEEehhHHHHhCCC------hhhHHHHHHHc----C-C
Confidence 2223322 247899999999976 2367889999996432111 01122222221 1 1
Q ss_pred cccccchhhHHHHHHHHHHHHHHhc
Q 018241 207 AKDSQSKLKEDAEKAALEKIQQALM 231 (359)
Q Consensus 207 ~~~~~Sa~~~~~~~~ll~~i~~~L~ 231 (359)
+..++||+++.+++++++.+.+...
T Consensus 131 pvv~tSA~tg~Gi~eL~~~i~~~~~ 155 (591)
T TIGR00437 131 PVVPTSATEGRGIERLKDAIRKAIG 155 (591)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhh
Confidence 1157899999999999999887653
No 99
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.44 E-value=5.1e-13 Score=117.80 Aligned_cols=143 Identities=20% Similarity=0.251 Sum_probs=88.3
Q ss_pred CcEEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCCcCCC
Q 018241 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA 135 (359)
Q Consensus 56 ~~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~~~~ 135 (359)
..+|+++|.+|||||||+++++++... ...|..+.+...-.+.+.+ .....+.+|||||.....
T Consensus 3 ~~kv~~vG~~~~GKTsli~~~~~~~~~--~~~~t~~~~~~~~~~~~~~--------------~~~~~l~l~Dt~G~~~~~ 66 (183)
T cd04152 3 SLHIVMLGLDSAGKTTVLYRLKFNEFV--NTVPTKGFNTEKIKVSLGN--------------SKGITFHFWDVGGQEKLR 66 (183)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCcC--CcCCccccceeEEEeeccC--------------CCceEEEEEECCCcHhHH
Confidence 479999999999999999999855433 2233222112111121111 113579999999974332
Q ss_pred CcCcchhhhHhhHHHhcccceEEeecCCC---------------------ccEEEeCCcccCCcchHHHHhhhhhccHHH
Q 018241 136 SQGEGLGNKFLSHIREVDSILQVVRCFED---------------------NDIVHVNGKVDPKSDVDVINLELVFSDLDQ 194 (359)
Q Consensus 136 ~~~~~~~~~~l~~i~~aD~il~Vvd~~~~---------------------~~v~~v~nk~d~~~~~~~i~~el~~~d~~~ 194 (359)
. .+...+++||++++|+|+++. .+++.+.||+|...+... +.
T Consensus 67 ~-------~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~NK~D~~~~~~~----------~~ 129 (183)
T cd04152 67 P-------LWKSYTRCTDGIVFVVDSVDVERMEEAKTELHKITRFSENQGVPVLVLANKQDLPNALSV----------SE 129 (183)
T ss_pred H-------HHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhhhhcCCCcEEEEEECcCccccCCH----------HH
Confidence 2 344557899999999998762 357889999996532110 11
Q ss_pred HHHHHH--HHhhh--ccccccchhhHHHHHHHHHHHHHHhc
Q 018241 195 IEKRME--KLKKG--KAKDSQSKLKEDAEKAALEKIQQALM 231 (359)
Q Consensus 195 l~~~~~--~~~~~--~~~~~~Sa~~~~~~~~ll~~i~~~L~ 231 (359)
++.... ..... .....+||+++.++.++++.+.+.+.
T Consensus 130 ~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~l~~~l~ 170 (183)
T cd04152 130 VEKLLALHELSASTPWHVQPACAIIGEGLQEGLEKLYEMIL 170 (183)
T ss_pred HHHHhCccccCCCCceEEEEeecccCCCHHHHHHHHHHHHH
Confidence 111110 01000 11146899999999999999887774
No 100
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.44 E-value=4.2e-13 Score=116.95 Aligned_cols=135 Identities=14% Similarity=0.184 Sum_probs=84.3
Q ss_pred CCcEEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCCcCC
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~~~ 134 (359)
..++|+++|.+|||||||+|+|++....... .|.......+.+. ...+.+|||||....
T Consensus 13 ~~~kv~ivG~~~~GKTsL~~~l~~~~~~~~~----~t~g~~~~~~~~~-----------------~~~l~l~D~~G~~~~ 71 (173)
T cd04154 13 REMRILILGLDNAGKTTILKKLLGEDIDTIS----PTLGFQIKTLEYE-----------------GYKLNIWDVGGQKTL 71 (173)
T ss_pred CccEEEEECCCCCCHHHHHHHHccCCCCCcC----CccccceEEEEEC-----------------CEEEEEEECCCCHHH
Confidence 4589999999999999999999955332211 1111112222222 356899999998543
Q ss_pred CCcCcchhhhHhhHHHhcccceEEeecCCC---------------------ccEEEeCCcccCCcchHHHHhhhhhccHH
Q 018241 135 ASQGEGLGNKFLSHIREVDSILQVVRCFED---------------------NDIVHVNGKVDPKSDVDVINLELVFSDLD 193 (359)
Q Consensus 135 ~~~~~~~~~~~l~~i~~aD~il~Vvd~~~~---------------------~~v~~v~nk~d~~~~~~~i~~el~~~d~~ 193 (359)
.. .+...++++|++++|+|+++. .+++.+.||+|...... .+
T Consensus 72 ~~-------~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~----------~~ 134 (173)
T cd04154 72 RP-------YWRNYFESTDALIWVVDSSDRLRLDDCKRELKELLQEERLAGATLLILANKQDLPGALS----------EE 134 (173)
T ss_pred HH-------HHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcccccCCC----------HH
Confidence 22 345567899999999998762 35788999999654220 01
Q ss_pred HHHHHHHHH--h-hhccccccchhhHHHHHHHHHHHH
Q 018241 194 QIEKRMEKL--K-KGKAKDSQSKLKEDAEKAALEKIQ 227 (359)
Q Consensus 194 ~l~~~~~~~--~-~~~~~~~~Sa~~~~~~~~ll~~i~ 227 (359)
.++...... . .......+||+.+.++.++++.+.
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~ 171 (173)
T cd04154 135 EIREALELDKISSHHWRIQPCSAVTGEGLLQGIDWLV 171 (173)
T ss_pred HHHHHhCccccCCCceEEEeccCCCCcCHHHHHHHHh
Confidence 111111100 0 011125779999999888887664
No 101
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.44 E-value=4.5e-13 Score=114.83 Aligned_cols=142 Identities=18% Similarity=0.138 Sum_probs=89.5
Q ss_pred cEEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCCcCCCC
Q 018241 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGAS 136 (359)
Q Consensus 57 ~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~~~~~ 136 (359)
+||+++|.||||||||+|++++... .....+..+.+.....+..++. ..++.+|||||......
T Consensus 1 ~kv~v~G~~~~GKTtli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~l~D~~G~~~~~~ 64 (164)
T smart00175 1 FKIILIGDSGVGKSSLLSRFTDGKF-SEQYKSTIGVDFKTKTIEVDGK---------------RVKLQIWDTAGQERFRS 64 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC-CCCCCCceeeEEEEEEEEECCE---------------EEEEEEEECCChHHHHH
Confidence 4899999999999999999995443 3333343443333333444321 24689999999643221
Q ss_pred cCcchhhhHhhHHHhcccceEEeecCCC--------------------ccEEEeCCcccCCcchHHHHhhhhhccHHHHH
Q 018241 137 QGEGLGNKFLSHIREVDSILQVVRCFED--------------------NDIVHVNGKVDPKSDVDVINLELVFSDLDQIE 196 (359)
Q Consensus 137 ~~~~~~~~~l~~i~~aD~il~Vvd~~~~--------------------~~v~~v~nk~d~~~~~~~i~~el~~~d~~~l~ 196 (359)
.....++.+|++++|+|+.+. .+++.+.||+|....... +.+...
T Consensus 65 -------~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~l~~~~~~~~~~~pivvv~nK~D~~~~~~~--------~~~~~~ 129 (164)
T smart00175 65 -------ITSSYYRGAVGALLVYDITNRESFENLKNWLKELREYADPNVVIMLVGNKSDLEDQRQV--------SREEAE 129 (164)
T ss_pred -------HHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcccccCC--------CHHHHH
Confidence 234456789999999998762 367889999996532110 111112
Q ss_pred HHHHHHhhhccccccchhhHHHHHHHHHHHHHHhc
Q 018241 197 KRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALM 231 (359)
Q Consensus 197 ~~~~~~~~~~~~~~~Sa~~~~~~~~ll~~i~~~L~ 231 (359)
+...... .....+|++.+.++.++++.+.+.+.
T Consensus 130 ~~~~~~~--~~~~e~Sa~~~~~i~~l~~~i~~~~~ 162 (164)
T smart00175 130 AFAEEHG--LPFFETSAKTNTNVEEAFEELAREIL 162 (164)
T ss_pred HHHHHcC--CeEEEEeCCCCCCHHHHHHHHHHHHh
Confidence 2111111 11146788999999999998888764
No 102
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=99.44 E-value=4.7e-13 Score=114.80 Aligned_cols=140 Identities=20% Similarity=0.131 Sum_probs=87.2
Q ss_pred cEEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCCcCCCC
Q 018241 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGAS 136 (359)
Q Consensus 57 ~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~~~~~ 136 (359)
+||+++|.+|||||||+|+|++..... ...+..+.+.....+.+++. ...+.+|||||......
T Consensus 1 ~ki~v~G~~~vGKTsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~---------------~~~l~l~D~~G~~~~~~ 64 (161)
T cd04113 1 FKFIIIGSSGTGKSCLLHRFVENKFKE-DSQHTIGVEFGSKIIRVGGK---------------RVKLQIWDTAGQERFRS 64 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCC-CCCCceeeeEEEEEEEECCE---------------EEEEEEEECcchHHHHH
Confidence 489999999999999999999554322 22222332333333444321 24689999999853322
Q ss_pred cCcchhhhHhhHHHhcccceEEeecCC--------------------CccEEEeCCcccCCcchHHHHhhhhhccHHHHH
Q 018241 137 QGEGLGNKFLSHIREVDSILQVVRCFE--------------------DNDIVHVNGKVDPKSDVDVINLELVFSDLDQIE 196 (359)
Q Consensus 137 ~~~~~~~~~l~~i~~aD~il~Vvd~~~--------------------~~~v~~v~nk~d~~~~~~~i~~el~~~d~~~l~ 196 (359)
.....++++|++++|+|+++ +.+++.+.||.|......... +...
T Consensus 65 -------~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~--------~~~~ 129 (161)
T cd04113 65 -------VTRSYYRGAAGALLVYDITNRTSFEALPTWLSDARALASPNIVVILVGNKSDLADQREVTF--------LEAS 129 (161)
T ss_pred -------hHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcchhccCCH--------HHHH
Confidence 33455688999999999977 235788899999764211101 1111
Q ss_pred HHHHHHhhhccccccchhhHHHHHHHHHHHHHH
Q 018241 197 KRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQA 229 (359)
Q Consensus 197 ~~~~~~~~~~~~~~~Sa~~~~~~~~ll~~i~~~ 229 (359)
....... .....+|++.+.++.++++.+.+.
T Consensus 130 ~~~~~~~--~~~~~~Sa~~~~~i~~~~~~~~~~ 160 (161)
T cd04113 130 RFAQENG--LLFLETSALTGENVEEAFLKCARS 160 (161)
T ss_pred HHHHHcC--CEEEEEECCCCCCHHHHHHHHHHh
Confidence 1111111 112567899999999998887653
No 103
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.44 E-value=3.9e-13 Score=118.80 Aligned_cols=148 Identities=18% Similarity=0.155 Sum_probs=92.3
Q ss_pred CCcEEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCCcCC
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~~~ 134 (359)
...+|+++|.+|||||||+|++++..... ...|..++.+.+.+. +..+.++||||....
T Consensus 18 ~~~ki~ilG~~~~GKStLi~~l~~~~~~~----~~~T~~~~~~~i~~~-----------------~~~~~l~D~~G~~~~ 76 (190)
T cd00879 18 KEAKILFLGLDNAGKTTLLHMLKDDRLAQ----HVPTLHPTSEELTIG-----------------NIKFKTFDLGGHEQA 76 (190)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCcc----cCCccCcceEEEEEC-----------------CEEEEEEECCCCHHH
Confidence 35799999999999999999999654321 223555666666665 356899999997432
Q ss_pred CCcCcchhhhHhhHHHhcccceEEeecCCC---------------------ccEEEeCCcccCCcc--hHHHHhhhhhcc
Q 018241 135 ASQGEGLGNKFLSHIREVDSILQVVRCFED---------------------NDIVHVNGKVDPKSD--VDVINLELVFSD 191 (359)
Q Consensus 135 ~~~~~~~~~~~l~~i~~aD~il~Vvd~~~~---------------------~~v~~v~nk~d~~~~--~~~i~~el~~~d 191 (359)
. ..+...++.+|++++|+|+++. .+++.+.||.|.... .+.+.+.+...+
T Consensus 77 ~-------~~~~~~~~~ad~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~~~~~~~~~~~~~~~~~ 149 (190)
T cd00879 77 R-------RLWKDYFPEVDGIVFLVDAADPERFQESKEELDSLLSDEELANVPFLILGNKIDLPGAVSEEELRQALGLYG 149 (190)
T ss_pred H-------HHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHcCccccCCCEEEEEeCCCCCCCcCHHHHHHHhCccc
Confidence 2 2345667899999999999762 467889999996532 222222111111
Q ss_pred HHHH--HHHHHHHhhhccccccchhhHHHHHHHHHHHHHHh
Q 018241 192 LDQI--EKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQAL 230 (359)
Q Consensus 192 ~~~l--~~~~~~~~~~~~~~~~Sa~~~~~~~~ll~~i~~~L 230 (359)
.... ....+...........||+.+.++.++++.+.+++
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~e~~~~l~~~~ 190 (190)
T cd00879 150 TTTGKGVSLKVSGIRPIEVFMCSVVKRQGYGEAFRWLSQYL 190 (190)
T ss_pred ccccccccccccCceeEEEEEeEecCCCChHHHHHHHHhhC
Confidence 0000 00000000011114679999999999998887653
No 104
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.44 E-value=8.8e-13 Score=117.98 Aligned_cols=145 Identities=13% Similarity=0.067 Sum_probs=90.0
Q ss_pred cEEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCCcCCCC
Q 018241 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGAS 136 (359)
Q Consensus 57 ~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~~~~~ 136 (359)
+||+++|.+|||||||+++++++... ....|....+.....+.+++.. ...+.+|||||......
T Consensus 1 ~KivivG~~~vGKTsli~~l~~~~~~-~~~~~t~~~d~~~~~v~~~~~~--------------~~~l~l~Dt~G~~~~~~ 65 (201)
T cd04107 1 LKVLVIGDLGVGKTSIIKRYVHGIFS-QHYKATIGVDFALKVIEWDPNT--------------VVRLQLWDIAGQERFGG 65 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCC-CCCCCceeEEEEEEEEEECCCC--------------EEEEEEEECCCchhhhh
Confidence 48999999999999999999954322 1122222222223333333111 35689999999854322
Q ss_pred cCcchhhhHhhHHHhcccceEEeecCC------------------------CccEEEeCCcccCCcchHHHHhhhhhccH
Q 018241 137 QGEGLGNKFLSHIREVDSILQVVRCFE------------------------DNDIVHVNGKVDPKSDVDVINLELVFSDL 192 (359)
Q Consensus 137 ~~~~~~~~~l~~i~~aD~il~Vvd~~~------------------------~~~v~~v~nk~d~~~~~~~i~~el~~~d~ 192 (359)
.....++++|++++|+|+++ +.+++.+.||.|....... ..
T Consensus 66 -------~~~~~~~~a~~~ilv~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~~~--------~~ 130 (201)
T cd04107 66 -------MTRVYYRGAVGAIIVFDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKKRLAK--------DG 130 (201)
T ss_pred -------hHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCccccccc--------CH
Confidence 33456789999999999875 2357889999997531111 11
Q ss_pred HHHHHHHHHHhhhccccccchhhHHHHHHHHHHHHHHhcC
Q 018241 193 DQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMD 232 (359)
Q Consensus 193 ~~l~~~~~~~~~~~~~~~~Sa~~~~~~~~ll~~i~~~L~~ 232 (359)
+.+....... .......+||+.+.++.++++.+.+.+..
T Consensus 131 ~~~~~~~~~~-~~~~~~e~Sak~~~~v~e~f~~l~~~l~~ 169 (201)
T cd04107 131 EQMDQFCKEN-GFIGWFETSAKEGINIEEAMRFLVKNILA 169 (201)
T ss_pred HHHHHHHHHc-CCceEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 1112211111 10111467999999999999999888754
No 105
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.44 E-value=1.4e-13 Score=117.91 Aligned_cols=134 Identities=22% Similarity=0.245 Sum_probs=84.8
Q ss_pred EEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCCcCCCCc
Q 018241 58 RAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGASQ 137 (359)
Q Consensus 58 ~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~~~~~~ 137 (359)
||+++|.+|+|||||+++|+.+.... ..| |...+...+.+. +.++.+|||||......
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~~~--~~~--t~~~~~~~~~~~-----------------~~~~~i~Dt~G~~~~~~- 58 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEVVT--TIP--TIGFNVETVTYK-----------------NLKFQVWDLGGQTSIRP- 58 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCCcC--cCC--ccCcCeEEEEEC-----------------CEEEEEEECCCCHHHHH-
Confidence 68999999999999999998544322 222 322333333332 35799999999864322
Q ss_pred CcchhhhHhhHHHhcccceEEeecCC---------------------CccEEEeCCcccCCcch--HHHHhhhhhccHHH
Q 018241 138 GEGLGNKFLSHIREVDSILQVVRCFE---------------------DNDIVHVNGKVDPKSDV--DVINLELVFSDLDQ 194 (359)
Q Consensus 138 ~~~~~~~~l~~i~~aD~il~Vvd~~~---------------------~~~v~~v~nk~d~~~~~--~~i~~el~~~d~~~ 194 (359)
.+...++.+|++++|+|+++ +.+++.+.||+|..... ..+..++.....
T Consensus 59 ------~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~i~~~~~~~~~-- 130 (158)
T cd04151 59 ------YWRCYYSNTDAIIYVVDSTDRDRLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGALSEAEISEKLGLSEL-- 130 (158)
T ss_pred ------HHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCCCCCHHHHHHHhCcccc--
Confidence 44566788999999999865 23688999999975422 111111100000
Q ss_pred HHHHHHHHhhhccccccchhhHHHHHHHHHHHHH
Q 018241 195 IEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQ 228 (359)
Q Consensus 195 l~~~~~~~~~~~~~~~~Sa~~~~~~~~ll~~i~~ 228 (359)
. ........+||+++.++.++++.+.+
T Consensus 131 ------~-~~~~~~~~~Sa~~~~gi~~l~~~l~~ 157 (158)
T cd04151 131 ------K-DRTWSIFKTSAIKGEGLDEGMDWLVN 157 (158)
T ss_pred ------C-CCcEEEEEeeccCCCCHHHHHHHHhc
Confidence 0 00011257899999999999887753
No 106
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.43 E-value=8e-13 Score=113.23 Aligned_cols=139 Identities=18% Similarity=0.135 Sum_probs=84.3
Q ss_pred cEEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCCcCCCC
Q 018241 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGAS 136 (359)
Q Consensus 57 ~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~~~~~ 136 (359)
.||+++|.+|||||||+|+|++..... ...|..+.+.....+.+... ..++.+|||||..+...
T Consensus 1 ~ki~v~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~---------------~~~~~l~D~~g~~~~~~ 64 (161)
T cd01863 1 LKILLIGDSGVGKSSLLLRFTDDTFDP-DLAATIGVDFKVKTLTVDGK---------------KVKLAIWDTAGQERFRT 64 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCc-ccCCcccceEEEEEEEECCE---------------EEEEEEEECCCchhhhh
Confidence 489999999999999999999554322 12222222222222323211 24689999999754332
Q ss_pred cCcchhhhHhhHHHhcccceEEeecCCC---------------------ccEEEeCCcccCCcchHHHHhhhhhccHHHH
Q 018241 137 QGEGLGNKFLSHIREVDSILQVVRCFED---------------------NDIVHVNGKVDPKSDVDVINLELVFSDLDQI 195 (359)
Q Consensus 137 ~~~~~~~~~l~~i~~aD~il~Vvd~~~~---------------------~~v~~v~nk~d~~~~~~~i~~el~~~d~~~l 195 (359)
.....++.+|++++|+|+++. .+++.+.||+|..... . +.+..
T Consensus 65 -------~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iv~nK~D~~~~~-~--------~~~~~ 128 (161)
T cd01863 65 -------LTSSYYRGAQGVILVYDVTRRDTFTNLETWLNELETYSTNNDIVKMLVGNKIDKENRE-V--------TREEG 128 (161)
T ss_pred -------hhHHHhCCCCEEEEEEECCCHHHHHhHHHHHHHHHHhCCCCCCcEEEEEECCcccccc-c--------CHHHH
Confidence 223446789999999998752 3467888999976211 0 00111
Q ss_pred HHHHHHHhhhccccccchhhHHHHHHHHHHHHHH
Q 018241 196 EKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQA 229 (359)
Q Consensus 196 ~~~~~~~~~~~~~~~~Sa~~~~~~~~ll~~i~~~ 229 (359)
...... . ......+|++.+.++.++++.+.+.
T Consensus 129 ~~~~~~-~-~~~~~~~Sa~~~~gi~~~~~~~~~~ 160 (161)
T cd01863 129 LKFARK-H-NMLFIETSAKTRDGVQQAFEELVEK 160 (161)
T ss_pred HHHHHH-c-CCEEEEEecCCCCCHHHHHHHHHHh
Confidence 111111 1 1112467899999999999887764
No 107
>PRK12739 elongation factor G; Reviewed
Probab=99.43 E-value=1.4e-13 Score=144.78 Aligned_cols=211 Identities=17% Similarity=0.160 Sum_probs=120.1
Q ss_pred CcEEEEEecCCCChhHHHHHHHhcccc-----ccC------------CCCceeccceeEEEEeCCCccchhccccccccc
Q 018241 56 SLRAGIVGLPNVGKSTLFNAVVENGKA-----QAA------------NFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKA 118 (359)
Q Consensus 56 ~~~i~ivG~pn~GKSTL~n~L~~~~~~-----~~~------------~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~ 118 (359)
-.+|+|+|++|+|||||+|+|+..... .+. ...++|++.....+.+.
T Consensus 8 irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~---------------- 71 (691)
T PRK12739 8 TRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWK---------------- 71 (691)
T ss_pred eeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEEC----------------
Confidence 358999999999999999999732111 112 14456666555555554
Q ss_pred cCceEEEEecCCCcCCCCcCcchhhhHhhHHHhcccceEEeecCCC----------------ccEEEeCCcccCCcchHH
Q 018241 119 VPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFED----------------NDIVHVNGKVDPKSDVDV 182 (359)
Q Consensus 119 ~~~~i~lvDtpG~~~~~~~~~~~~~~~l~~i~~aD~il~Vvd~~~~----------------~~v~~v~nk~d~~~~~~~ 182 (359)
+.++.|+||||+.++ ...+...++.+|++++|+|+.+. .+++.+.||+|....
T Consensus 72 -~~~i~liDTPG~~~f-------~~e~~~al~~~D~~ilVvDa~~g~~~qt~~i~~~~~~~~~p~iv~iNK~D~~~~--- 140 (691)
T PRK12739 72 -GHRINIIDTPGHVDF-------TIEVERSLRVLDGAVAVFDAVSGVEPQSETVWRQADKYGVPRIVFVNKMDRIGA--- 140 (691)
T ss_pred -CEEEEEEcCCCHHHH-------HHHHHHHHHHhCeEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECCCCCCC---
Confidence 578999999998653 23678888999999999999653 134555566654421
Q ss_pred HHhhhhhccHHHHHHHHHHHhhhccccccchhhHHHHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHH-HHhhhhcCCeE
Q 018241 183 INLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMDGKPARSVTLNDFERDSIK-QLCLLTMKPII 261 (359)
Q Consensus 183 i~~el~~~d~~~l~~~~~~~~~~~~~~~~Sa~~~~~~~~ll~~i~~~L~~~~~~~~~~~t~~~~e~i~-~~~~l~~kp~~ 261 (359)
....+++.+.+.+.... .+..++......+. .++....+...
T Consensus 141 -----------------------------------~~~~~~~~i~~~l~~~~--~~~~iPis~~~~f~g~vd~~~~~~~~ 183 (691)
T PRK12739 141 -----------------------------------DFFRSVEQIKDRLGANA--VPIQLPIGAEDDFKGVIDLIKMKAII 183 (691)
T ss_pred -----------------------------------CHHHHHHHHHHHhCCCc--eeEEecccccccceEEEEcchhhhhh
Confidence 12223333333332100 00001100000000 00111111111
Q ss_pred EEE-----eCCCcccCCCCCChhHHHHHHHHHhcCCeEEEeeHHHHHHHcCCCHHHHHHHHHHcCCCCchHHHHHHHHHH
Q 018241 262 YVA-----NVAESDLADPGSNPHVNEVMNLASDLQSGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYS 336 (359)
Q Consensus 262 y~~-----nv~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~sa~le~~l~~l~~~~~~~~l~~~~~~~~~l~~li~~~~~ 336 (359)
|-- +....+.+ ....+.+.++..+ +-+.+.+.|++..++||++.+++...+...++.+..
T Consensus 184 ~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~-----------l~e~v~e~dd~lle~yl~~~~~~~~~l~~~l~~~~~ 248 (691)
T PRK12739 184 WDDETLGAKYEEEDIP----ADLKEKAEEYREK-----------LIEAVAEVDEELMEKYLEGEEITEEEIKAAIRKATI 248 (691)
T ss_pred ccCCCCCCeeEEcCCC----HHHHHHHHHHHHH-----------HHHhhhhcCHHHHHHHhccCCCCHHHHHHHHHHHHH
Confidence 100 00011111 2333444444332 566788888899999999999888888888888888
Q ss_pred hcCCeEEec
Q 018241 337 LLGLRTYFT 345 (359)
Q Consensus 337 ~L~li~ffT 345 (359)
...++|+|-
T Consensus 249 ~~~~~Pv~~ 257 (691)
T PRK12739 249 NMEFFPVLC 257 (691)
T ss_pred cCCEEEEEe
Confidence 888888874
No 108
>COG3596 Predicted GTPase [General function prediction only]
Probab=99.43 E-value=3.1e-13 Score=123.52 Aligned_cols=93 Identities=15% Similarity=0.199 Sum_probs=75.0
Q ss_pred cCCcEEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCCcC
Q 018241 54 SMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVK 133 (359)
Q Consensus 54 ~~~~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~~ 133 (359)
..+++|.|+|.+|||||||+|||.++....++..+-+|..++.-...++ ...+.||||||+.+
T Consensus 37 ~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~~~~~-----------------~~~l~lwDtPG~gd 99 (296)
T COG3596 37 KEPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLRLSYD-----------------GENLVLWDTPGLGD 99 (296)
T ss_pred cCceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhhHHhhcc-----------------ccceEEecCCCccc
Confidence 3568899999999999999999998788888877767755544444444 24699999999988
Q ss_pred CCCcCcchhhhHhhHHHhcccceEEeecCC
Q 018241 134 GASQGEGLGNKFLSHIREVDSILQVVRCFE 163 (359)
Q Consensus 134 ~~~~~~~~~~~~l~~i~~aD~il~Vvd~~~ 163 (359)
+..+.......+...+...|++++++++.+
T Consensus 100 g~~~D~~~r~~~~d~l~~~DLvL~l~~~~d 129 (296)
T COG3596 100 GKDKDAEHRQLYRDYLPKLDLVLWLIKADD 129 (296)
T ss_pred chhhhHHHHHHHHHHhhhccEEEEeccCCC
Confidence 776665566778888999999999999877
No 109
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.43 E-value=7.2e-13 Score=114.44 Aligned_cols=142 Identities=13% Similarity=0.102 Sum_probs=88.6
Q ss_pred CcEEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCCcCCC
Q 018241 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA 135 (359)
Q Consensus 56 ~~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~~~~ 135 (359)
..+|+++|.+|||||||+++++++. ......+..+.+.....+.+.+. ...+.+|||||.....
T Consensus 7 ~~~v~v~G~~~~GKSsli~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~---------------~~~~~~~D~~g~~~~~ 70 (169)
T cd04114 7 LFKIVLIGNAGVGKTCLVRRFTQGL-FPPGQGATIGVDFMIKTVEIKGE---------------KIKLQIWDTAGQERFR 70 (169)
T ss_pred eeEEEEECCCCCCHHHHHHHHHhCC-CCCCCCCceeeEEEEEEEEECCE---------------EEEEEEEECCCcHHHH
Confidence 4799999999999999999999443 22223333333344444444321 1358899999975332
Q ss_pred CcCcchhhhHhhHHHhcccceEEeecCCC--------------------ccEEEeCCcccCCcchHHHHhhhhhccHHHH
Q 018241 136 SQGEGLGNKFLSHIREVDSILQVVRCFED--------------------NDIVHVNGKVDPKSDVDVINLELVFSDLDQI 195 (359)
Q Consensus 136 ~~~~~~~~~~l~~i~~aD~il~Vvd~~~~--------------------~~v~~v~nk~d~~~~~~~i~~el~~~d~~~l 195 (359)
. .....++.+|++++|+|+++. .+++.+.||.|...+.+. ..+ .
T Consensus 71 ~-------~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~i~v~NK~D~~~~~~i-~~~--------~ 134 (169)
T cd04114 71 S-------ITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYANNKVITILVGNKIDLAERREV-SQQ--------R 134 (169)
T ss_pred H-------HHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccccc-CHH--------H
Confidence 2 334567889999999998752 246788999996532221 111 1
Q ss_pred HHHHHHHhhhccccccchhhHHHHHHHHHHHHHHh
Q 018241 196 EKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQAL 230 (359)
Q Consensus 196 ~~~~~~~~~~~~~~~~Sa~~~~~~~~ll~~i~~~L 230 (359)
.+....... .....+|++.+.++.++++.+.+++
T Consensus 135 ~~~~~~~~~-~~~~~~Sa~~~~gv~~l~~~i~~~~ 168 (169)
T cd04114 135 AEEFSDAQD-MYYLETSAKESDNVEKLFLDLACRL 168 (169)
T ss_pred HHHHHHHcC-CeEEEeeCCCCCCHHHHHHHHHHHh
Confidence 111111111 1114678899999999999887654
No 110
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.43 E-value=4.6e-13 Score=118.69 Aligned_cols=146 Identities=19% Similarity=0.193 Sum_probs=93.5
Q ss_pred cEEEEEecCCCChhHHHHHHHhccccccC-----------------CCCceeccceeEEEEeCCCccchhcccccccccc
Q 018241 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAA-----------------NFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAV 119 (359)
Q Consensus 57 ~~i~ivG~pn~GKSTL~n~L~~~~~~~~~-----------------~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~ 119 (359)
.+|+++|+.++|||||+++|++....... ...+.|.+.....+. ....
T Consensus 4 ~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~---------------~~~~ 68 (188)
T PF00009_consen 4 RNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFE---------------KNEN 68 (188)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEE---------------BTES
T ss_pred EEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhccccccccccccc---------------cccc
Confidence 68999999999999999999954322100 112334333333333 0112
Q ss_pred CceEEEEecCCCcCCCCcCcchhhhHhhHHHhcccceEEeecCCC----------------ccEEEeCCcccCCcchHHH
Q 018241 120 PASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFED----------------NDIVHVNGKVDPKSDVDVI 183 (359)
Q Consensus 120 ~~~i~lvDtpG~~~~~~~~~~~~~~~l~~i~~aD~il~Vvd~~~~----------------~~v~~v~nk~d~~~~~~~i 183 (359)
...+.|+||||..++ .......++.+|++++|||+.++ .+++.++||+|... . .+
T Consensus 69 ~~~i~~iDtPG~~~f-------~~~~~~~~~~~D~ailvVda~~g~~~~~~~~l~~~~~~~~p~ivvlNK~D~~~-~-~~ 139 (188)
T PF00009_consen 69 NRKITLIDTPGHEDF-------IKEMIRGLRQADIAILVVDANDGIQPQTEEHLKILRELGIPIIVVLNKMDLIE-K-EL 139 (188)
T ss_dssp SEEEEEEEESSSHHH-------HHHHHHHHTTSSEEEEEEETTTBSTHHHHHHHHHHHHTT-SEEEEEETCTSSH-H-HH
T ss_pred ccceeecccccccce-------eecccceecccccceeeeecccccccccccccccccccccceEEeeeeccchh-h-hH
Confidence 567999999998543 33567778999999999999873 35899999999881 1 11
Q ss_pred HhhhhhccHHHHH-HHHHHHhhh----ccccccchhhHHHHHHHHHHHHHHhc
Q 018241 184 NLELVFSDLDQIE-KRMEKLKKG----KAKDSQSKLKEDAEKAALEKIQQALM 231 (359)
Q Consensus 184 ~~el~~~d~~~l~-~~~~~~~~~----~~~~~~Sa~~~~~~~~ll~~i~~~L~ 231 (359)
.. ..+.+. ..+...... ....++||..+.++..|++.+.+++|
T Consensus 140 ~~-----~~~~~~~~l~~~~~~~~~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~P 187 (188)
T PF00009_consen 140 EE-----IIEEIKEKLLKEYGENGEEIVPVIPISALTGDGIDELLEALVELLP 187 (188)
T ss_dssp HH-----HHHHHHHHHHHHTTSTTTSTEEEEEEBTTTTBTHHHHHHHHHHHS-
T ss_pred HH-----HHHHHHHHhccccccCccccceEEEEecCCCCCHHHHHHHHHHhCc
Confidence 11 001111 111111111 11257899999999999999999886
No 111
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.43 E-value=6.6e-13 Score=117.76 Aligned_cols=140 Identities=19% Similarity=0.119 Sum_probs=88.7
Q ss_pred EEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCCcCCCCc
Q 018241 58 RAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGASQ 137 (359)
Q Consensus 58 ~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~~~~~~ 137 (359)
+|+++|.+|||||||+|+++++... ..++.|+.+.....+.+.+. ...+.+|||||..+...
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~f~--~~~~~t~~~~~~~~~~~~~~---------------~~~l~i~Dt~G~~~~~~- 62 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNHFV--ETYDPTIEDSYRKQVVVDGQ---------------PCMLEVLDTAGQEEYTA- 62 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCC--ccCCCchHhhEEEEEEECCE---------------EEEEEEEECCCchhhHH-
Confidence 5899999999999999999955442 23444443333223333321 24588999999754332
Q ss_pred CcchhhhHhhHHHhcccceEEeecCCC-----------------------ccEEEeCCcccCCcchHHHHhhhhhccHHH
Q 018241 138 GEGLGNKFLSHIREVDSILQVVRCFED-----------------------NDIVHVNGKVDPKSDVDVINLELVFSDLDQ 194 (359)
Q Consensus 138 ~~~~~~~~l~~i~~aD~il~Vvd~~~~-----------------------~~v~~v~nk~d~~~~~~~i~~el~~~d~~~ 194 (359)
.....++.+|++++|+|+++. .+++.+.||+|...+...... .
T Consensus 63 ------~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~~~~v~~~--------~ 128 (190)
T cd04144 63 ------LRDQWIREGEGFILVYSITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVYEREVSTE--------E 128 (190)
T ss_pred ------HHHHHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhccccCccCHH--------H
Confidence 233567889999999998662 257788999997532221111 1
Q ss_pred HHHHHHHHhhhccccccchhhHHHHHHHHHHHHHHhc
Q 018241 195 IEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALM 231 (359)
Q Consensus 195 l~~~~~~~~~~~~~~~~Sa~~~~~~~~ll~~i~~~L~ 231 (359)
......... .....+||+.+.++.++++.+.+.+.
T Consensus 129 ~~~~~~~~~--~~~~e~SAk~~~~v~~l~~~l~~~l~ 163 (190)
T cd04144 129 GAALARRLG--CEFIEASAKTNVNVERAFYTLVRALR 163 (190)
T ss_pred HHHHHHHhC--CEEEEecCCCCCCHHHHHHHHHHHHH
Confidence 111111111 11256899999999999988887763
No 112
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.43 E-value=1.9e-13 Score=118.89 Aligned_cols=134 Identities=16% Similarity=0.164 Sum_probs=84.6
Q ss_pred CcEEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCCcCCC
Q 018241 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA 135 (359)
Q Consensus 56 ~~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~~~~ 135 (359)
.++|+++|.+|||||||+++|+.+... ...|.++ .....+... ...+.+|||||..+..
T Consensus 9 ~~kv~i~G~~~~GKTsli~~l~~~~~~--~~~~t~g--~~~~~~~~~-----------------~~~~~l~Dt~G~~~~~ 67 (168)
T cd04149 9 EMRILMLGLDAAGKTTILYKLKLGQSV--TTIPTVG--FNVETVTYK-----------------NVKFNVWDVGGQDKIR 67 (168)
T ss_pred ccEEEEECcCCCCHHHHHHHHccCCCc--cccCCcc--cceEEEEEC-----------------CEEEEEEECCCCHHHH
Confidence 479999999999999999999844332 1222222 122222222 3579999999985432
Q ss_pred CcCcchhhhHhhHHHhcccceEEeecCCC---------------------ccEEEeCCcccCCcc--hHHHHhhhhhccH
Q 018241 136 SQGEGLGNKFLSHIREVDSILQVVRCFED---------------------NDIVHVNGKVDPKSD--VDVINLELVFSDL 192 (359)
Q Consensus 136 ~~~~~~~~~~l~~i~~aD~il~Vvd~~~~---------------------~~v~~v~nk~d~~~~--~~~i~~el~~~d~ 192 (359)
. .....+++||++++|+|+++. .+++.+.||+|.... .+.+...+.+.
T Consensus 68 ~-------~~~~~~~~a~~ii~v~D~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~-- 138 (168)
T cd04149 68 P-------LWRHYYTGTQGLIFVVDSADRDRIDEARQELHRIINDREMRDALLLVFANKQDLPDAMKPHEIQEKLGLT-- 138 (168)
T ss_pred H-------HHHHHhccCCEEEEEEeCCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCccCCCHHHHHHHcCCC--
Confidence 2 334567899999999999872 357889999996532 12222211110
Q ss_pred HHHHHHHHHHhh-hccccccchhhHHHHHHHHHHHH
Q 018241 193 DQIEKRMEKLKK-GKAKDSQSKLKEDAEKAALEKIQ 227 (359)
Q Consensus 193 ~~l~~~~~~~~~-~~~~~~~Sa~~~~~~~~ll~~i~ 227 (359)
.... ......+||+++.++.++++.|.
T Consensus 139 --------~~~~~~~~~~~~SAk~g~gv~~~~~~l~ 166 (168)
T cd04149 139 --------RIRDRNWYVQPSCATSGDGLYEGLTWLS 166 (168)
T ss_pred --------ccCCCcEEEEEeeCCCCCChHHHHHHHh
Confidence 0000 01114679999999998888764
No 113
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=99.43 E-value=6.5e-13 Score=114.78 Aligned_cols=140 Identities=19% Similarity=0.119 Sum_probs=87.7
Q ss_pred cEEEEEecCCCChhHHHHHHHhccccccCCCCceeccce-eEEEEeCCCccchhccccccccccCceEEEEecCCCcCCC
Q 018241 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPN-VGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA 135 (359)
Q Consensus 57 ~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~-~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~~~~ 135 (359)
+||+++|.+|||||||+++++++... ..++.|+.... .-.+...+. ...+.+|||||.....
T Consensus 3 ~ki~iiG~~~vGKTsli~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~---------------~~~l~i~Dt~G~~~~~ 65 (166)
T cd04122 3 FKYIIIGDMGVGKSCLLHQFTEKKFM--ADCPHTIGVEFGTRIIEVNGQ---------------KIKLQIWDTAGQERFR 65 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCC--CCCCcccceeEEEEEEEECCE---------------EEEEEEEECCCcHHHH
Confidence 69999999999999999999955432 23333322111 112222221 2468999999975332
Q ss_pred CcCcchhhhHhhHHHhcccceEEeecCCC--------------------ccEEEeCCcccCCcchHHHHhhhhhccHHHH
Q 018241 136 SQGEGLGNKFLSHIREVDSILQVVRCFED--------------------NDIVHVNGKVDPKSDVDVINLELVFSDLDQI 195 (359)
Q Consensus 136 ~~~~~~~~~~l~~i~~aD~il~Vvd~~~~--------------------~~v~~v~nk~d~~~~~~~i~~el~~~d~~~l 195 (359)
. .....++++|++++|+|+++. .+++.+.||+|...+...... ..
T Consensus 66 ~-------~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~iiiv~nK~Dl~~~~~~~~~--------~~ 130 (166)
T cd04122 66 A-------VTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLEAQRDVTYE--------EA 130 (166)
T ss_pred H-------HHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCcCHH--------HH
Confidence 2 345567899999999999862 257889999997543221111 11
Q ss_pred HHHHHHHhhhccccccchhhHHHHHHHHHHHHHHh
Q 018241 196 EKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQAL 230 (359)
Q Consensus 196 ~~~~~~~~~~~~~~~~Sa~~~~~~~~ll~~i~~~L 230 (359)
.+..... . .....+||+.+.++.+++..+...+
T Consensus 131 ~~~~~~~-~-~~~~e~Sa~~~~~i~e~f~~l~~~~ 163 (166)
T cd04122 131 KQFADEN-G-LLFLECSAKTGENVEDAFLETAKKI 163 (166)
T ss_pred HHHHHHc-C-CEEEEEECCCCCCHHHHHHHHHHHH
Confidence 1111111 1 1114679999999999888877655
No 114
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=99.43 E-value=1.1e-12 Score=112.65 Aligned_cols=140 Identities=19% Similarity=0.157 Sum_probs=87.3
Q ss_pred cEEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCCcCCCC
Q 018241 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGAS 136 (359)
Q Consensus 57 ~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~~~~~ 136 (359)
.+|+++|.||||||||++++.++.... .+..|+.+.....+.+++. ...+.+|||||..+...
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~--~~~~t~~~~~~~~~~~~~~---------------~~~l~i~Dt~G~~~~~~ 64 (163)
T cd04176 2 YKVVVLGSGGVGKSALTVQFVSGTFIE--KYDPTIEDFYRKEIEVDSS---------------PSVLEILDTAGTEQFAS 64 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCC--CCCCchhheEEEEEEECCE---------------EEEEEEEECCCcccccc
Confidence 589999999999999999999554332 2222332233333433321 24588999999865543
Q ss_pred cCcchhhhHhhHHHhcccceEEeecCCC---------------------ccEEEeCCcccCCcchHHHHhhhhhccHHHH
Q 018241 137 QGEGLGNKFLSHIREVDSILQVVRCFED---------------------NDIVHVNGKVDPKSDVDVINLELVFSDLDQI 195 (359)
Q Consensus 137 ~~~~~~~~~l~~i~~aD~il~Vvd~~~~---------------------~~v~~v~nk~d~~~~~~~i~~el~~~d~~~l 195 (359)
.....++++|++++|+|+++. .+++.+.||+|...+..... ...
T Consensus 65 -------~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piviv~nK~Dl~~~~~~~~--------~~~ 129 (163)
T cd04176 65 -------MRDLYIKNGQGFIVVYSLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLESEREVSS--------AEG 129 (163)
T ss_pred -------hHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcCccCH--------HHH
Confidence 233456889999999998762 35788999999653221100 001
Q ss_pred HHHHHHHhhhccccccchhhHHHHHHHHHHHHHHh
Q 018241 196 EKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQAL 230 (359)
Q Consensus 196 ~~~~~~~~~~~~~~~~Sa~~~~~~~~ll~~i~~~L 230 (359)
........ .....+||+.+.++.++++.+.+.|
T Consensus 130 ~~~~~~~~--~~~~~~Sa~~~~~v~~l~~~l~~~l 162 (163)
T cd04176 130 RALAEEWG--CPFMETSAKSKTMVNELFAEIVRQM 162 (163)
T ss_pred HHHHHHhC--CEEEEecCCCCCCHHHHHHHHHHhc
Confidence 11111111 1114678999999999998887655
No 115
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=99.43 E-value=1.4e-12 Score=112.44 Aligned_cols=137 Identities=16% Similarity=0.115 Sum_probs=84.9
Q ss_pred cEEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeE--EEEeCCCccchhccccccccccCceEEEEecCCCcCC
Q 018241 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVG--IVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (359)
Q Consensus 57 ~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g--~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~~~ 134 (359)
+||+++|.+|||||||++++.++..... ..+ |..+... .+.+.+. ...+.+|||||....
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~---------------~~~~~i~Dt~G~~~~ 62 (161)
T cd04124 1 VKIILLGDSAVGKSKLVERFLMDGYEPQ-QLS--TYALTLYKHNAKFEGK---------------TILVDFWDTAGQERF 62 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCC-cCC--ceeeEEEEEEEEECCE---------------EEEEEEEeCCCchhh
Confidence 4899999999999999999995443221 111 1111111 1122211 246889999998544
Q ss_pred CCcCcchhhhHhhHHHhcccceEEeecCC-------------------CccEEEeCCcccCCcchHHHHhhhhhccHHHH
Q 018241 135 ASQGEGLGNKFLSHIREVDSILQVVRCFE-------------------DNDIVHVNGKVDPKSDVDVINLELVFSDLDQI 195 (359)
Q Consensus 135 ~~~~~~~~~~~l~~i~~aD~il~Vvd~~~-------------------~~~v~~v~nk~d~~~~~~~i~~el~~~d~~~l 195 (359)
.. .....++++|++++|+|+++ +.+++.+.||+|..... ..+ .
T Consensus 63 ~~-------~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~p~ivv~nK~Dl~~~~---~~~--------~ 124 (161)
T cd04124 63 QT-------MHASYYHKAHACILVFDVTRKITYKNLSKWYEELREYRPEIPCIVVANKIDLDPSV---TQK--------K 124 (161)
T ss_pred hh-------hhHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCcEEEEEECccCchhH---HHH--------H
Confidence 33 33456789999999999876 23678899999963211 111 0
Q ss_pred HHHHHHHhhhccccccchhhHHHHHHHHHHHHHHhc
Q 018241 196 EKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALM 231 (359)
Q Consensus 196 ~~~~~~~~~~~~~~~~Sa~~~~~~~~ll~~i~~~L~ 231 (359)
....... ......+||+++.++.++++.+.+.+.
T Consensus 125 ~~~~~~~--~~~~~~~Sa~~~~gv~~l~~~l~~~~~ 158 (161)
T cd04124 125 FNFAEKH--NLPLYYVSAADGTNVVKLFQDAIKLAV 158 (161)
T ss_pred HHHHHHc--CCeEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 0100111 111246799999999999998887664
No 116
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=99.42 E-value=7.9e-13 Score=113.28 Aligned_cols=141 Identities=16% Similarity=0.104 Sum_probs=84.0
Q ss_pred cEEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCCcCCCC
Q 018241 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGAS 136 (359)
Q Consensus 57 ~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~~~~~ 136 (359)
+||+++|.+|+|||||+|+++++... ....|..+.+.....+.++.. .....+.+|||||..+...
T Consensus 1 ~kv~~vG~~~~GKTsl~~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~-------------~~~~~~~i~D~~G~~~~~~ 66 (162)
T cd04106 1 IKVIVVGNGNVGKSSMIQRFVKGIFT-KDYKKTIGVDFLEKQIFLRQS-------------DEDVRLMLWDTAGQEEFDA 66 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCC-CCCCCcEEEEEEEEEEEEcCC-------------CCEEEEEEeeCCchHHHHH
Confidence 48999999999999999999954332 122222222222222322200 0135699999999743322
Q ss_pred cCcchhhhHhhHHHhcccceEEeecCC-------------------CccEEEeCCcccCCcchHHHHhhhhhccHHHHHH
Q 018241 137 QGEGLGNKFLSHIREVDSILQVVRCFE-------------------DNDIVHVNGKVDPKSDVDVINLELVFSDLDQIEK 197 (359)
Q Consensus 137 ~~~~~~~~~l~~i~~aD~il~Vvd~~~-------------------~~~v~~v~nk~d~~~~~~~i~~el~~~d~~~l~~ 197 (359)
.....++.+|++++|+|+.+ +.+++.+.||.|...+...-.. ....
T Consensus 67 -------~~~~~~~~~~~~v~v~d~~~~~s~~~l~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~v~~~--------~~~~ 131 (162)
T cd04106 67 -------ITKAYYRGAQACILVFSTTDRESFEAIESWKEKVEAECGDIPMVLVQTKIDLLDQAVITNE--------EAEA 131 (162)
T ss_pred -------hHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhcccccCCCHH--------HHHH
Confidence 33456789999999999876 2357888999997643211111 1111
Q ss_pred HHHHHhhhccccccchhhHHHHHHHHHHHHH
Q 018241 198 RMEKLKKGKAKDSQSKLKEDAEKAALEKIQQ 228 (359)
Q Consensus 198 ~~~~~~~~~~~~~~Sa~~~~~~~~ll~~i~~ 228 (359)
...... .....+|++++.++.++++.+..
T Consensus 132 ~~~~~~--~~~~~~Sa~~~~~v~~l~~~l~~ 160 (162)
T cd04106 132 LAKRLQ--LPLFRTSVKDDFNVTELFEYLAE 160 (162)
T ss_pred HHHHcC--CeEEEEECCCCCCHHHHHHHHHH
Confidence 111111 11146788888888888877654
No 117
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.42 E-value=1.1e-12 Score=117.02 Aligned_cols=149 Identities=14% Similarity=0.083 Sum_probs=94.6
Q ss_pred EEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCCcCCCCc
Q 018241 58 RAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGASQ 137 (359)
Q Consensus 58 ~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~~~~~~ 137 (359)
||+++|.+|||||||++++++.... ..++.++.+.....+.+.+. ...+.+|||||......
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~---------------~~~l~i~D~~G~~~~~~- 62 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTFE--PKYRRTVEEMHRKEYEVGGV---------------SLTLDILDTSGSYSFPA- 62 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCC--ccCCCchhhheeEEEEECCE---------------EEEEEEEECCCchhhhH-
Confidence 6899999999999999999955432 23444443333334444321 24688999999864432
Q ss_pred CcchhhhHhhHHHhcccceEEeecCCC---------------------ccEEEeCCcccCCcchHHHHhhhhhccHHHHH
Q 018241 138 GEGLGNKFLSHIREVDSILQVVRCFED---------------------NDIVHVNGKVDPKSDVDVINLELVFSDLDQIE 196 (359)
Q Consensus 138 ~~~~~~~~l~~i~~aD~il~Vvd~~~~---------------------~~v~~v~nk~d~~~~~~~i~~el~~~d~~~l~ 196 (359)
.....++++|++++|+|+++. .+++.+.||.|.......+.. ....
T Consensus 63 ------~~~~~~~~ad~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~v~~-------~~~~ 129 (198)
T cd04147 63 ------MRKLSIQNSDAFALVYAVDDPESFEEVERLREEILEVKEDKFVPIVVVGNKADSLEEERQVPA-------KDAL 129 (198)
T ss_pred ------HHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEccccccccccccH-------HHHH
Confidence 122456889999999998762 368899999997643111111 0111
Q ss_pred HHHHHHhhhccccccchhhHHHHHHHHHHHHHHhcCCCCCCC
Q 018241 197 KRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMDGKPARS 238 (359)
Q Consensus 197 ~~~~~~~~~~~~~~~Sa~~~~~~~~ll~~i~~~L~~~~~~~~ 238 (359)
+... .........+||+++.++.++++.+.+.+....+..+
T Consensus 130 ~~~~-~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~~~~~~~ 170 (198)
T cd04147 130 STVE-LDWNCGFVETSAKDNENVLEVFKELLRQANLPYNLSP 170 (198)
T ss_pred HHHH-hhcCCcEEEecCCCCCCHHHHHHHHHHHhhcccccch
Confidence 1111 0000111357899999999999999998865555444
No 118
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.41 E-value=8.2e-13 Score=113.52 Aligned_cols=143 Identities=20% Similarity=0.204 Sum_probs=86.1
Q ss_pred cEEEEEecCCCChhHHHHHHHhccccccCCCCcee-ccceeEEEEeCCCccchhccccccccccCceEEEEecCCCcCCC
Q 018241 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCT-IEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA 135 (359)
Q Consensus 57 ~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT-~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~~~~ 135 (359)
+||+++|.+|||||||+++|.++...-...+..++ .+...-.+.+.+.. ..++.+|||||.....
T Consensus 1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~--------------~~~l~i~Dt~G~~~~~ 66 (164)
T cd04101 1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDN--------------TVELFIFDSAGQELYS 66 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCC--------------EEEEEEEECCCHHHHH
Confidence 48999999999999999999843222223333333 12111122222111 3579999999974322
Q ss_pred CcCcchhhhHhhHHHhcccceEEeecCCC-------------------ccEEEeCCcccCCcchHHHHhhhhhccHHHHH
Q 018241 136 SQGEGLGNKFLSHIREVDSILQVVRCFED-------------------NDIVHVNGKVDPKSDVDVINLELVFSDLDQIE 196 (359)
Q Consensus 136 ~~~~~~~~~~l~~i~~aD~il~Vvd~~~~-------------------~~v~~v~nk~d~~~~~~~i~~el~~~d~~~l~ 196 (359)
. .....++++|++++|+|.++. .+++.+.||.|...+.+.-.. ...
T Consensus 67 ~-------~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~--------~~~ 131 (164)
T cd04101 67 D-------MVSNYWESPSVFILVYDVSNKASFENCSRWVNKVRTASKHMPGVLVGNKMDLADKAEVTDA--------QAQ 131 (164)
T ss_pred H-------HHHHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccCCCHH--------HHH
Confidence 1 234456889999999998763 467888999996543211110 001
Q ss_pred HHHHHHhhhccccccchhhHHHHHHHHHHHHHHh
Q 018241 197 KRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQAL 230 (359)
Q Consensus 197 ~~~~~~~~~~~~~~~Sa~~~~~~~~ll~~i~~~L 230 (359)
. +..-.. .....+||+++.++.++++.+.+.+
T Consensus 132 ~-~~~~~~-~~~~~~Sa~~~~gi~~l~~~l~~~~ 163 (164)
T cd04101 132 A-FAQANQ-LKFFKTSALRGVGYEEPFESLARAF 163 (164)
T ss_pred H-HHHHcC-CeEEEEeCCCCCChHHHHHHHHHHh
Confidence 1 110000 1114678999999999998887664
No 119
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=99.41 E-value=1.5e-12 Score=111.59 Aligned_cols=140 Identities=19% Similarity=0.118 Sum_probs=86.9
Q ss_pred cEEEEEecCCCChhHHHHHHHhccccc-cCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCCcCCC
Q 018241 57 LRAGIVGLPNVGKSTLFNAVVENGKAQ-AANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA 135 (359)
Q Consensus 57 ~~i~ivG~pn~GKSTL~n~L~~~~~~~-~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~~~~ 135 (359)
+||+++|.+|||||||+|+++++.... ..+..+.+ ...-.+.+.+. ...+.+|||||.....
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~--~~~~~v~~~~~---------------~~~~~i~D~~G~~~~~ 64 (163)
T cd01860 2 FKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAA--FLTQTVNLDDT---------------TVKFEIWDTAGQERYR 64 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcccee--EEEEEEEECCE---------------EEEEEEEeCCchHHHH
Confidence 689999999999999999999655433 22222211 11222333321 2468899999964322
Q ss_pred CcCcchhhhHhhHHHhcccceEEeecCCC--------------------ccEEEeCCcccCCcchHHHHhhhhhccHHHH
Q 018241 136 SQGEGLGNKFLSHIREVDSILQVVRCFED--------------------NDIVHVNGKVDPKSDVDVINLELVFSDLDQI 195 (359)
Q Consensus 136 ~~~~~~~~~~l~~i~~aD~il~Vvd~~~~--------------------~~v~~v~nk~d~~~~~~~i~~el~~~d~~~l 195 (359)
. .....++++|++++|+|+++. .+++.+.||+|....... +.+..
T Consensus 65 ~-------~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~--------~~~~~ 129 (163)
T cd01860 65 S-------LAPMYYRGAAAAIVVYDITSEESFEKAKSWVKELQRNASPNIIIALVGNKADLESKRQV--------STEEA 129 (163)
T ss_pred H-------HHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccCcC--------CHHHH
Confidence 2 223456889999999998762 246778899996532111 11111
Q ss_pred HHHHHHHhhhccccccchhhHHHHHHHHHHHHHHh
Q 018241 196 EKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQAL 230 (359)
Q Consensus 196 ~~~~~~~~~~~~~~~~Sa~~~~~~~~ll~~i~~~L 230 (359)
.+...... .....+|++.+.++.++++.+.+.+
T Consensus 130 ~~~~~~~~--~~~~~~Sa~~~~~v~~l~~~l~~~l 162 (163)
T cd01860 130 QEYADENG--LLFFETSAKTGENVNELFTEIAKKL 162 (163)
T ss_pred HHHHHHcC--CEEEEEECCCCCCHHHHHHHHHHHh
Confidence 11111111 1125789999999999999988776
No 120
>PRK00007 elongation factor G; Reviewed
Probab=99.41 E-value=2.5e-13 Score=142.88 Aligned_cols=210 Identities=15% Similarity=0.137 Sum_probs=120.0
Q ss_pred cEEEEEecCCCChhHHHHHHHhcccc-----ccC------------CCCceeccceeEEEEeCCCccchhcccccccccc
Q 018241 57 LRAGIVGLPNVGKSTLFNAVVENGKA-----QAA------------NFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAV 119 (359)
Q Consensus 57 ~~i~ivG~pn~GKSTL~n~L~~~~~~-----~~~------------~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~ 119 (359)
.+|+|+|++|+|||||+|+|+..... .++ ...++|++.....+.+.
T Consensus 11 rni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~----------------- 73 (693)
T PRK00007 11 RNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWK----------------- 73 (693)
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEEC-----------------
Confidence 59999999999999999999731111 122 24456666555555444
Q ss_pred CceEEEEecCCCcCCCCcCcchhhhHhhHHHhcccceEEeecCCC----------------ccEEEeCCcccCCcchHHH
Q 018241 120 PASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFED----------------NDIVHVNGKVDPKSDVDVI 183 (359)
Q Consensus 120 ~~~i~lvDtpG~~~~~~~~~~~~~~~l~~i~~aD~il~Vvd~~~~----------------~~v~~v~nk~d~~~~~~~i 183 (359)
+.++.|+||||+.++. ......++.+|++++|+|+.+. .+.+.+.||+|....
T Consensus 74 ~~~~~liDTPG~~~f~-------~ev~~al~~~D~~vlVvda~~g~~~qt~~~~~~~~~~~~p~iv~vNK~D~~~~---- 142 (693)
T PRK00007 74 DHRINIIDTPGHVDFT-------IEVERSLRVLDGAVAVFDAVGGVEPQSETVWRQADKYKVPRIAFVNKMDRTGA---- 142 (693)
T ss_pred CeEEEEEeCCCcHHHH-------HHHHHHHHHcCEEEEEEECCCCcchhhHHHHHHHHHcCCCEEEEEECCCCCCC----
Confidence 4689999999986532 2577888999999999998653 134555566654421
Q ss_pred HhhhhhccHHHHHHHHHHHhhhccccccchhhHHHHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHH-HHhhhhcCCeEE
Q 018241 184 NLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMDGKPARSVTLNDFERDSIK-QLCLLTMKPIIY 262 (359)
Q Consensus 184 ~~el~~~d~~~l~~~~~~~~~~~~~~~~Sa~~~~~~~~ll~~i~~~L~~~~~~~~~~~t~~~~e~i~-~~~~l~~kp~~y 262 (359)
.....++.+.+.+.... .+..++......++ .+.++..+...|
T Consensus 143 ----------------------------------~~~~~~~~i~~~l~~~~--~~~~ipisa~~~f~g~~d~~~~~~~~~ 186 (693)
T PRK00007 143 ----------------------------------DFYRVVEQIKDRLGANP--VPIQLPIGAEDDFKGVVDLVKMKAIIW 186 (693)
T ss_pred ----------------------------------CHHHHHHHHHHHhCCCe--eeEEecCccCCcceEEEEcceeeeeec
Confidence 12223333333332110 00000000000011 011111211222
Q ss_pred EE-----eCCCcccCCCCCChhHHHHHHHHHhcCCeEEEeeHHHHHHHcCCCHHHHHHHHHHcCCCCchHHHHHHHHHHh
Q 018241 263 VA-----NVAESDLADPGSNPHVNEVMNLASDLQSGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSL 337 (359)
Q Consensus 263 ~~-----nv~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~sa~le~~l~~l~~~~~~~~l~~~~~~~~~l~~li~~~~~~ 337 (359)
.- +....+++ ....+.+.++..+ +-+.+.+.|++.+++||++..++...+...++.+...
T Consensus 187 ~~~~~~~~~~~~~~~----~~~~~~~~~~~~~-----------l~e~v~e~dd~lle~yle~~~l~~~~l~~~l~~~~~~ 251 (693)
T PRK00007 187 NEADLGATFEYEEIP----ADLKDKAEEYREK-----------LIEAAAEADEELMEKYLEGEELTEEEIKAALRKATIA 251 (693)
T ss_pred ccCCCCCcceEccCC----HHHHHHHHHHHHH-----------HHHHHHccCHHHHHHHhCcCCCCHHHHHHHHHHHHhc
Confidence 10 00011111 2233444444332 6677888899999999998888888888888888888
Q ss_pred cCCeEEec
Q 018241 338 LGLRTYFT 345 (359)
Q Consensus 338 L~li~ffT 345 (359)
..++|+|-
T Consensus 252 ~~~~Pv~~ 259 (693)
T PRK00007 252 NEIVPVLC 259 (693)
T ss_pred CcEEEEEe
Confidence 88888885
No 121
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.41 E-value=4.8e-13 Score=112.44 Aligned_cols=106 Identities=25% Similarity=0.261 Sum_probs=67.6
Q ss_pred cEEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCCcCCCC
Q 018241 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGAS 136 (359)
Q Consensus 57 ~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~~~~~ 136 (359)
+||+++|.+|+|||||+|+|++.. ...+..+++|.+.....+..++. ...+.+|||||..+...
T Consensus 2 ~ki~~~G~~~~GKstl~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~D~~G~~~~~~ 65 (161)
T TIGR00231 2 IKIVIVGDPNVGKSTLLNRLLGNK-FITEYKPGTTRNYVTTVIEEDGK---------------TYKFNLLDTAGQEDYRA 65 (161)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC-CcCcCCCCceeeeeEEEEEECCE---------------EEEEEEEECCCcccchH
Confidence 689999999999999999999655 77777888887777666655431 14689999999654433
Q ss_pred cCcchhhhHhhHHHhcccceEEeecCC---------------CccEEEeCCcccCCc
Q 018241 137 QGEGLGNKFLSHIREVDSILQVVRCFE---------------DNDIVHVNGKVDPKS 178 (359)
Q Consensus 137 ~~~~~~~~~l~~i~~aD~il~Vvd~~~---------------~~~v~~v~nk~d~~~ 178 (359)
............+..+|++++|+|+.+ +.+++.+.||.|...
T Consensus 66 ~~~~~~~~~~~~i~~~d~~~~v~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 122 (161)
T TIGR00231 66 IRRLYYRAVESSLRVFDIVILVLDVEEILEKQTKEIIHHAESNVPIILVGNKIDLRD 122 (161)
T ss_pred HHHHHHhhhhEEEEEEEEeeeehhhhhHhHHHHHHHHHhcccCCcEEEEEEcccCCc
Confidence 111111122222333455554444432 224667777777653
No 122
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=99.41 E-value=1.5e-12 Score=116.42 Aligned_cols=144 Identities=15% Similarity=0.095 Sum_probs=88.7
Q ss_pred CCcEEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCCcCC
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~~~ 134 (359)
..++|+++|.+|||||||++++.+.... ....|..+.+.....+.+++. ...+.+|||||....
T Consensus 5 ~~~kivvvG~~~vGKTsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~---------------~~~l~l~D~~G~~~~ 68 (199)
T cd04110 5 HLFKLLIIGDSGVGKSSLLLRFADNTFS-GSYITTIGVDFKIRTVEINGE---------------RVKLQIWDTAGQERF 68 (199)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCC-CCcCccccceeEEEEEEECCE---------------EEEEEEEeCCCchhH
Confidence 4589999999999999999999954432 111222221222222333221 246889999997543
Q ss_pred CCcCcchhhhHhhHHHhcccceEEeecCCC-------------------ccEEEeCCcccCCcchHHHHhhhhhccHHHH
Q 018241 135 ASQGEGLGNKFLSHIREVDSILQVVRCFED-------------------NDIVHVNGKVDPKSDVDVINLELVFSDLDQI 195 (359)
Q Consensus 135 ~~~~~~~~~~~l~~i~~aD~il~Vvd~~~~-------------------~~v~~v~nk~d~~~~~~~i~~el~~~d~~~l 195 (359)
.. .....++++|++++|+|+++. .+++.+.||+|.......... ..
T Consensus 69 ~~-------~~~~~~~~a~~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~piivVgNK~Dl~~~~~~~~~--------~~ 133 (199)
T cd04110 69 RT-------ITSTYYRGTHGVIVVYDVTNGESFVNVKRWLQEIEQNCDDVCKVLVGNKNDDPERKVVETE--------DA 133 (199)
T ss_pred HH-------HHHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccccCHH--------HH
Confidence 32 345567889999999998762 357889999996532211111 11
Q ss_pred HHHHHHHhhhccccccchhhHHHHHHHHHHHHHHhc
Q 018241 196 EKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALM 231 (359)
Q Consensus 196 ~~~~~~~~~~~~~~~~Sa~~~~~~~~ll~~i~~~L~ 231 (359)
........ .....+||+.+.++.++++.+...+-
T Consensus 134 ~~~~~~~~--~~~~e~Sa~~~~gi~~lf~~l~~~~~ 167 (199)
T cd04110 134 YKFAGQMG--ISLFETSAKENINVEEMFNCITELVL 167 (199)
T ss_pred HHHHHHcC--CEEEEEECCCCcCHHHHHHHHHHHHH
Confidence 11111111 11146789999999999988877663
No 123
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.41 E-value=1.1e-12 Score=112.01 Aligned_cols=133 Identities=19% Similarity=0.181 Sum_probs=84.4
Q ss_pred EEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCCcCCCCc
Q 018241 58 RAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGASQ 137 (359)
Q Consensus 58 ~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~~~~~~ 137 (359)
||+++|.+|||||||+|++++...... ..|.......+.+. ...+.+|||||......
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~~~~~----~~t~~~~~~~~~~~-----------------~~~~~i~D~~G~~~~~~- 58 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGEVVTT----IPTIGFNVETVEYK-----------------NVSFTVWDVGGQDKIRP- 58 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCCCCC----CCCcCcceEEEEEC-----------------CEEEEEEECCCChhhHH-
Confidence 689999999999999999996652221 12222233333332 35799999999864422
Q ss_pred CcchhhhHhhHHHhcccceEEeecCCC---------------------ccEEEeCCcccCCcchHHHHhhhhhccHHHHH
Q 018241 138 GEGLGNKFLSHIREVDSILQVVRCFED---------------------NDIVHVNGKVDPKSDVDVINLELVFSDLDQIE 196 (359)
Q Consensus 138 ~~~~~~~~l~~i~~aD~il~Vvd~~~~---------------------~~v~~v~nk~d~~~~~~~i~~el~~~d~~~l~ 196 (359)
.+...++.+|++++|+|+++. .+++.+.||+|...... .+.+.
T Consensus 59 ------~~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~----------~~~~~ 122 (158)
T cd00878 59 ------LWKHYYENTNGIIFVVDSSDRERIEEAKEELHKLLNEEELKGVPLLIFANKQDLPGALS----------VSELI 122 (158)
T ss_pred ------HHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEeeccCCccccC----------HHHHH
Confidence 344566889999999999863 35788899999764220 01111
Q ss_pred HHHHHH---hhhccccccchhhHHHHHHHHHHHHH
Q 018241 197 KRMEKL---KKGKAKDSQSKLKEDAEKAALEKIQQ 228 (359)
Q Consensus 197 ~~~~~~---~~~~~~~~~Sa~~~~~~~~ll~~i~~ 228 (359)
...... ........+||+++.++.++++.+..
T Consensus 123 ~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~l~~ 157 (158)
T cd00878 123 EKLGLEKILGRRWHIQPCSAVTGDGLDEGLDWLLQ 157 (158)
T ss_pred HhhChhhccCCcEEEEEeeCCCCCCHHHHHHHHhh
Confidence 111100 01111146789999998888887754
No 124
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.40 E-value=7.8e-13 Score=118.12 Aligned_cols=98 Identities=19% Similarity=0.175 Sum_probs=68.1
Q ss_pred cEEEEEecCCCChhHHHHHHHhcccc------c---------cCCCCceeccceeEEEEeCCCccchhccccccccccCc
Q 018241 57 LRAGIVGLPNVGKSTLFNAVVENGKA------Q---------AANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPA 121 (359)
Q Consensus 57 ~~i~ivG~pn~GKSTL~n~L~~~~~~------~---------~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~ 121 (359)
++|+++|++++|||||+++|++.... . ..-..++|++.....+.. .+.
T Consensus 3 ~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~-----------------~~~ 65 (195)
T cd01884 3 VNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYET-----------------ANR 65 (195)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecC-----------------CCe
Confidence 68999999999999999999953110 0 001334444433222221 246
Q ss_pred eEEEEecCCCcCCCCcCcchhhhHhhHHHhcccceEEeecCCC----------------cc-EEEeCCcccCCc
Q 018241 122 SVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFED----------------ND-IVHVNGKVDPKS 178 (359)
Q Consensus 122 ~i~lvDtpG~~~~~~~~~~~~~~~l~~i~~aD~il~Vvd~~~~----------------~~-v~~v~nk~d~~~ 178 (359)
++.|+||||+.+ +.......++.+|++++|||+.+. .+ ++.+.||+|.+.
T Consensus 66 ~i~~iDtPG~~~-------~~~~~~~~~~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~~~iIvviNK~D~~~ 132 (195)
T cd01884 66 HYAHVDCPGHAD-------YIKNMITGAAQMDGAILVVSATDGPMPQTREHLLLARQVGVPYIVVFLNKADMVD 132 (195)
T ss_pred EEEEEECcCHHH-------HHHHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCcEEEEEeCCCCCC
Confidence 899999999853 334667788999999999999763 23 567889999864
No 125
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.40 E-value=2.2e-12 Score=111.57 Aligned_cols=141 Identities=18% Similarity=0.155 Sum_probs=86.4
Q ss_pred cEEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCCcCCCC
Q 018241 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGAS 136 (359)
Q Consensus 57 ~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~~~~~ 136 (359)
.||+++|.+|||||||+|+++++.... .+|.++ +...-...+.+ ...++.+|||||......
T Consensus 1 ~kv~ivG~~~vGKTsl~~~l~~~~~~~--~~~~~~-~~~~~~~~~~~---------------~~~~~~i~Dt~G~~~~~~ 62 (166)
T cd01893 1 VRIVLIGDEGVGKSSLIMSLVSEEFPE--NVPRVL-PEITIPADVTP---------------ERVPTTIVDTSSRPQDRA 62 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCc--cCCCcc-cceEeeeeecC---------------CeEEEEEEeCCCchhhhH
Confidence 389999999999999999999654422 233222 11111111111 135689999999854322
Q ss_pred cCcchhhhHhhHHHhcccceEEeecCC--------------------CccEEEeCCcccCCcchHH--HHhhhhhccHHH
Q 018241 137 QGEGLGNKFLSHIREVDSILQVVRCFE--------------------DNDIVHVNGKVDPKSDVDV--INLELVFSDLDQ 194 (359)
Q Consensus 137 ~~~~~~~~~l~~i~~aD~il~Vvd~~~--------------------~~~v~~v~nk~d~~~~~~~--i~~el~~~d~~~ 194 (359)
.+...++.+|++++|+|+++ +.+++.+.||+|...+... +..++ ..
T Consensus 63 -------~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~-----~~ 130 (166)
T cd01893 63 -------NLAAEIRKANVICLVYSVDRPSTLERIRTKWLPLIRRLGVKVPIILVGNKSDLRDGSSQAGLEEEM-----LP 130 (166)
T ss_pred -------HHhhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhcccccchhHHHHHH-----HH
Confidence 34455688999999999876 1357889999997643321 11111 00
Q ss_pred HHHHHHHHhhhccccccchhhHHHHHHHHHHHHHHh
Q 018241 195 IEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQAL 230 (359)
Q Consensus 195 l~~~~~~~~~~~~~~~~Sa~~~~~~~~ll~~i~~~L 230 (359)
+. ..+........+||+++.++.++++.+.+.+
T Consensus 131 ~~---~~~~~~~~~~e~Sa~~~~~v~~lf~~~~~~~ 163 (166)
T cd01893 131 IM---NEFREIETCVECSAKTLINVSEVFYYAQKAV 163 (166)
T ss_pred HH---HHHhcccEEEEeccccccCHHHHHHHHHHHh
Confidence 11 1111111114678999999999998887765
No 126
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.40 E-value=4.1e-13 Score=116.51 Aligned_cols=140 Identities=18% Similarity=0.185 Sum_probs=86.8
Q ss_pred cccCCcEEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCC
Q 018241 52 KISMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGL 131 (359)
Q Consensus 52 ~~~~~~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~ 131 (359)
.....++|+++|.+|||||||+++|++.......+ |...+...+... +..+.+|||||.
T Consensus 10 ~~~~~~~v~i~G~~g~GKStLl~~l~~~~~~~~~~----t~g~~~~~i~~~-----------------~~~~~~~D~~G~ 68 (173)
T cd04155 10 KSSEEPRILILGLDNAGKTTILKQLASEDISHITP----TQGFNIKTVQSD-----------------GFKLNVWDIGGQ 68 (173)
T ss_pred ccCCccEEEEEccCCCCHHHHHHHHhcCCCcccCC----CCCcceEEEEEC-----------------CEEEEEEECCCC
Confidence 33446899999999999999999999654322211 111122233333 356899999997
Q ss_pred cCCCCcCcchhhhHhhHHHhcccceEEeecCC---------------------CccEEEeCCcccCCcc--hHHHHhhhh
Q 018241 132 VKGASQGEGLGNKFLSHIREVDSILQVVRCFE---------------------DNDIVHVNGKVDPKSD--VDVINLELV 188 (359)
Q Consensus 132 ~~~~~~~~~~~~~~l~~i~~aD~il~Vvd~~~---------------------~~~v~~v~nk~d~~~~--~~~i~~el~ 188 (359)
.... ..+...++.+|++++|+|+++ +.+++.+.||+|.... .+.+..++.
T Consensus 69 ~~~~-------~~~~~~~~~~~~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~i~~~l~ 141 (173)
T cd04155 69 RAIR-------PYWRNYFENTDCLIYVIDSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLATAAPAEEIAEALN 141 (173)
T ss_pred HHHH-------HHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCCccCCCHHHHHHHcC
Confidence 4322 234456688999999999875 2357788899997543 222222211
Q ss_pred hccHHHHHHHHHHHhhhccccccchhhHHHHHHHHHHHHH
Q 018241 189 FSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQ 228 (359)
Q Consensus 189 ~~d~~~l~~~~~~~~~~~~~~~~Sa~~~~~~~~ll~~i~~ 228 (359)
+.++ .........+||+++.++.++++.+.+
T Consensus 142 ~~~~---------~~~~~~~~~~Sa~~~~gi~~~~~~l~~ 172 (173)
T cd04155 142 LHDL---------RDRTWHIQACSAKTGEGLQEGMNWVCK 172 (173)
T ss_pred Cccc---------CCCeEEEEEeECCCCCCHHHHHHHHhc
Confidence 1110 000001136799999999888887653
No 127
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=99.40 E-value=1.3e-12 Score=113.80 Aligned_cols=141 Identities=16% Similarity=0.116 Sum_probs=87.6
Q ss_pred EEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCCcCCCCc
Q 018241 58 RAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGASQ 137 (359)
Q Consensus 58 ~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~~~~~~ 137 (359)
||++||.+|||||||++++.++.. .....|....+.....+.+.+. ..++.+|||||..+...
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~f-~~~~~~t~~~~~~~~~~~~~~~---------------~~~l~i~Dt~G~~~~~~- 64 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVF-DKNYKATIGVDFEMERFEILGV---------------PFSLQLWDTAGQERFKC- 64 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC-CCCCCCceeeEEEEEEEEECCE---------------EEEEEEEeCCChHHHHh-
Confidence 799999999999999999995433 2222222222222233333321 24699999999864432
Q ss_pred CcchhhhHhhHHHhcccceEEeecCCC---------------------ccEEEeCCcccCCcchHH--HHhhhhhccHHH
Q 018241 138 GEGLGNKFLSHIREVDSILQVVRCFED---------------------NDIVHVNGKVDPKSDVDV--INLELVFSDLDQ 194 (359)
Q Consensus 138 ~~~~~~~~l~~i~~aD~il~Vvd~~~~---------------------~~v~~v~nk~d~~~~~~~--i~~el~~~d~~~ 194 (359)
.....++++|++++|+|+++. .+++.+.||.|....... ...+
T Consensus 65 ------~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~~~~~~-------- 130 (170)
T cd04108 65 ------IASTYYRGAQAIIIVFDLTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLSSPAQYALMEQD-------- 130 (170)
T ss_pred ------hHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEChhcCccccccccHHH--------
Confidence 334567899999999999761 236789999996433211 1110
Q ss_pred HHHHHHHHhhhccccccchhhHHHHHHHHHHHHHHhc
Q 018241 195 IEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALM 231 (359)
Q Consensus 195 l~~~~~~~~~~~~~~~~Sa~~~~~~~~ll~~i~~~L~ 231 (359)
......... .....+||+.+.++.++++.+.+++.
T Consensus 131 ~~~~~~~~~--~~~~e~Sa~~g~~v~~lf~~l~~~~~ 165 (170)
T cd04108 131 AIKLAAEMQ--AEYWSVSALSGENVREFFFRVAALTF 165 (170)
T ss_pred HHHHHHHcC--CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 011111111 11146789999999999998888774
No 128
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.40 E-value=4.8e-13 Score=114.49 Aligned_cols=135 Identities=19% Similarity=0.173 Sum_probs=82.0
Q ss_pred EEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCCcCCCCc
Q 018241 58 RAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGASQ 137 (359)
Q Consensus 58 ~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~~~~~~ 137 (359)
+|+++|.+|||||||+++|++.... ...+. .|.......+... ...+.+|||||..+...
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~-~~~~~-~t~g~~~~~~~~~-----------------~~~~~l~Dt~G~~~~~~- 60 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQ-SQIIV-PTVGFNVESFEKG-----------------NLSFTAFDMSGQGKYRG- 60 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCC-cceec-CccccceEEEEEC-----------------CEEEEEEECCCCHhhHH-
Confidence 5899999999999999999954321 11111 1211111122221 45799999999864432
Q ss_pred CcchhhhHhhHHHhcccceEEeecCC-----------------------CccEEEeCCcccCCcch--HHHHhhhhhccH
Q 018241 138 GEGLGNKFLSHIREVDSILQVVRCFE-----------------------DNDIVHVNGKVDPKSDV--DVINLELVFSDL 192 (359)
Q Consensus 138 ~~~~~~~~l~~i~~aD~il~Vvd~~~-----------------------~~~v~~v~nk~d~~~~~--~~i~~el~~~d~ 192 (359)
.+...++++|++++|+|+++ +.+++.+.||.|..... ..+...+.+...
T Consensus 61 ------~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~l~~~~~ 134 (162)
T cd04157 61 ------LWEHYYKNIQGIIFVIDSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDALTAVKITQLLGLENI 134 (162)
T ss_pred ------HHHHHHccCCEEEEEEeCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccCCCCHHHHHHHhCCccc
Confidence 33456789999999999865 13578899999975432 111111111100
Q ss_pred HHHHHHHHHHhhhccccccchhhHHHHHHHHHHHH
Q 018241 193 DQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQ 227 (359)
Q Consensus 193 ~~l~~~~~~~~~~~~~~~~Sa~~~~~~~~ll~~i~ 227 (359)
.........+||+++.++.++++.+.
T Consensus 135 ---------~~~~~~~~~~Sa~~g~gv~~~~~~l~ 160 (162)
T cd04157 135 ---------KDKPWHIFASNALTGEGLDEGVQWLQ 160 (162)
T ss_pred ---------cCceEEEEEeeCCCCCchHHHHHHHh
Confidence 00001114689999999999888764
No 129
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.40 E-value=1.6e-12 Score=117.42 Aligned_cols=143 Identities=21% Similarity=0.199 Sum_probs=88.1
Q ss_pred cEEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCCcCCCC
Q 018241 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGAS 136 (359)
Q Consensus 57 ~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~~~~~ 136 (359)
+||+++|.+|||||||+|+++++..... ..|..+.+.....+.+.+.. ...+.+|||||......
T Consensus 3 ~KIvvvG~~~vGKTsLi~~l~~~~~~~~-~~~ti~~d~~~~~i~~~~~~--------------~~~l~i~Dt~G~~~~~~ 67 (211)
T cd04111 3 FRLIVIGDSTVGKSSLLKRFTEGRFAEV-SDPTVGVDFFSRLIEIEPGV--------------RIKLQLWDTAGQERFRS 67 (211)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCC-CCceeceEEEEEEEEECCCC--------------EEEEEEEeCCcchhHHH
Confidence 6999999999999999999996544332 22222222222233332111 24689999999753322
Q ss_pred cCcchhhhHhhHHHhcccceEEeecCCC---------------------ccEEEeCCcccCCcchHHHHhhhhhccHHHH
Q 018241 137 QGEGLGNKFLSHIREVDSILQVVRCFED---------------------NDIVHVNGKVDPKSDVDVINLELVFSDLDQI 195 (359)
Q Consensus 137 ~~~~~~~~~l~~i~~aD~il~Vvd~~~~---------------------~~v~~v~nk~d~~~~~~~i~~el~~~d~~~l 195 (359)
.....++++|++++|+|.++. .+++.+.||.|...+...... +...+
T Consensus 68 -------~~~~~~~~~d~iilv~D~~~~~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl~~~~~v~~~-----~~~~~ 135 (211)
T cd04111 68 -------ITRSYYRNSVGVLLVFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDLESQRQVTRE-----EAEKL 135 (211)
T ss_pred -------HHHHHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEccccccccccCHH-----HHHHH
Confidence 334567889999999998762 235678899997643211111 11111
Q ss_pred HHHHHHHhhhccccccchhhHHHHHHHHHHHHHHhc
Q 018241 196 EKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALM 231 (359)
Q Consensus 196 ~~~~~~~~~~~~~~~~Sa~~~~~~~~ll~~i~~~L~ 231 (359)
.+ .. . .....+||+++.++.++++.+.+.+.
T Consensus 136 ~~---~~-~-~~~~e~Sak~g~~v~e~f~~l~~~~~ 166 (211)
T cd04111 136 AK---DL-G-MKYIETSARTGDNVEEAFELLTQEIY 166 (211)
T ss_pred HH---Hh-C-CEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 11 11 1 11146789999999999888877664
No 130
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.40 E-value=1.6e-12 Score=113.74 Aligned_cols=138 Identities=20% Similarity=0.200 Sum_probs=86.9
Q ss_pred CcEEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCCcCCC
Q 018241 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA 135 (359)
Q Consensus 56 ~~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~~~~ 135 (359)
.++|+++|.+|||||||++++..+... ...| |.......+... ..++.+|||||.....
T Consensus 13 ~~ki~l~G~~~~GKTsL~~~~~~~~~~--~~~~--t~~~~~~~~~~~-----------------~~~l~l~D~~G~~~~~ 71 (175)
T smart00177 13 EMRILMVGLDAAGKTTILYKLKLGESV--TTIP--TIGFNVETVTYK-----------------NISFTVWDVGGQDKIR 71 (175)
T ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCCC--CcCC--ccccceEEEEEC-----------------CEEEEEEECCCChhhH
Confidence 589999999999999999999733322 1222 211222222222 3579999999985433
Q ss_pred CcCcchhhhHhhHHHhcccceEEeecCCC---------------------ccEEEeCCcccCCcch--HHHHhhhhhccH
Q 018241 136 SQGEGLGNKFLSHIREVDSILQVVRCFED---------------------NDIVHVNGKVDPKSDV--DVINLELVFSDL 192 (359)
Q Consensus 136 ~~~~~~~~~~l~~i~~aD~il~Vvd~~~~---------------------~~v~~v~nk~d~~~~~--~~i~~el~~~d~ 192 (359)
. .+...+++||++++|+|+++. .+++.+.||.|..... +.+...+.+...
T Consensus 72 ~-------~~~~~~~~ad~ii~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~ 144 (175)
T smart00177 72 P-------LWRHYYTNTQGLIFVVDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPDAMKAAEITEKLGLHSI 144 (175)
T ss_pred H-------HHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCcccCCCHHHHHHHhCcccc
Confidence 2 344557899999999998762 3578899999965322 222221111000
Q ss_pred HHHHHHHHHHhhhccccccchhhHHHHHHHHHHHHHHh
Q 018241 193 DQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQAL 230 (359)
Q Consensus 193 ~~l~~~~~~~~~~~~~~~~Sa~~~~~~~~ll~~i~~~L 230 (359)
. ........+||+.+.++.++++.+.+++
T Consensus 145 ---~------~~~~~~~~~Sa~~g~gv~e~~~~l~~~~ 173 (175)
T smart00177 145 ---R------DRNWYIQPTCATSGDGLYEGLTWLSNNL 173 (175)
T ss_pred ---C------CCcEEEEEeeCCCCCCHHHHHHHHHHHh
Confidence 0 0001113679999999999999887765
No 131
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=99.40 E-value=1.6e-12 Score=116.73 Aligned_cols=143 Identities=17% Similarity=0.175 Sum_probs=90.7
Q ss_pred cEEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCCcCCCC
Q 018241 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGAS 136 (359)
Q Consensus 57 ~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~~~~~ 136 (359)
++|.++|.+|||||||++++..+.... ...|..+.+.....+.+++. ...+.+|||||..++..
T Consensus 1 ~~vvvlG~~gVGKTSli~r~~~~~f~~-~~~~Ti~~~~~~~~i~~~~~---------------~v~l~iwDtaGqe~~~~ 64 (202)
T cd04120 1 LQVIIIGSRGVGKTSLMRRFTDDTFCE-ACKSGVGVDFKIKTVELRGK---------------KIRLQIWDTAGQERFNS 64 (202)
T ss_pred CEEEEECcCCCCHHHHHHHHHhCCCCC-cCCCcceeEEEEEEEEECCE---------------EEEEEEEeCCCchhhHH
Confidence 478999999999999999999444321 11122222333333444431 25689999999865433
Q ss_pred cCcchhhhHhhHHHhcccceEEeecCCC--------------------ccEEEeCCcccCCcchHHHHhhhhhccHHHHH
Q 018241 137 QGEGLGNKFLSHIREVDSILQVVRCFED--------------------NDIVHVNGKVDPKSDVDVINLELVFSDLDQIE 196 (359)
Q Consensus 137 ~~~~~~~~~l~~i~~aD~il~Vvd~~~~--------------------~~v~~v~nk~d~~~~~~~i~~el~~~d~~~l~ 196 (359)
.....+++||++++|+|+++. .+++.+.||+|...+.+.... ..+
T Consensus 65 -------l~~~y~~~ad~iIlVfDvtd~~Sf~~l~~w~~~i~~~~~~~~piilVgNK~DL~~~~~v~~~--------~~~ 129 (202)
T cd04120 65 -------ITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREISRQ--------QGE 129 (202)
T ss_pred -------HHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHH--------HHH
Confidence 334567899999999998872 357889999996533221111 111
Q ss_pred HHHHHHhhhccccccchhhHHHHHHHHHHHHHHhc
Q 018241 197 KRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALM 231 (359)
Q Consensus 197 ~~~~~~~~~~~~~~~Sa~~~~~~~~ll~~i~~~L~ 231 (359)
+....... .....+||+++.++.++++.+...+.
T Consensus 130 ~~a~~~~~-~~~~etSAktg~gV~e~F~~l~~~~~ 163 (202)
T cd04120 130 KFAQQITG-MRFCEASAKDNFNVDEIFLKLVDDIL 163 (202)
T ss_pred HHHHhcCC-CEEEEecCCCCCCHHHHHHHHHHHHH
Confidence 11111101 11146899999999999998887774
No 132
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.40 E-value=9.8e-13 Score=112.57 Aligned_cols=134 Identities=19% Similarity=0.254 Sum_probs=83.6
Q ss_pred EEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCCcCCCCc
Q 018241 58 RAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGASQ 137 (359)
Q Consensus 58 ~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~~~~~~ 137 (359)
+|+++|.+|||||||+|++++...... .| |.......+..+. ...+.+|||||......
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~~~~--~~--t~~~~~~~~~~~~----------------~~~l~i~D~~G~~~~~~- 59 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELVTT--IP--TVGFNVEMLQLEK----------------HLSLTVWDVGGQEKMRT- 59 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCcccc--cC--ccCcceEEEEeCC----------------ceEEEEEECCCCHhHHH-
Confidence 589999999999999999996554322 22 2222222333221 35699999999853322
Q ss_pred CcchhhhHhhHHHhcccceEEeecCCC---------------------ccEEEeCCcccCCcc--hHHHHhhhhhccHHH
Q 018241 138 GEGLGNKFLSHIREVDSILQVVRCFED---------------------NDIVHVNGKVDPKSD--VDVINLELVFSDLDQ 194 (359)
Q Consensus 138 ~~~~~~~~l~~i~~aD~il~Vvd~~~~---------------------~~v~~v~nk~d~~~~--~~~i~~el~~~d~~~ 194 (359)
.+...++++|++++|+|+++. .+++.+.||.|.... .+.+..++..
T Consensus 60 ------~~~~~~~~~~~iv~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~----- 128 (160)
T cd04156 60 ------VWKCYLENTDGLVYVVDSSDEARLDESQKELKHILKNEHIKGVPVVLLANKQDLPGALTAEEITRRFKL----- 128 (160)
T ss_pred ------HHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHhchhhcCCCEEEEEECcccccCcCHHHHHHHcCC-----
Confidence 445567899999999998762 357889999996421 1122111110
Q ss_pred HHHHHHHHhhh--ccccccchhhHHHHHHHHHHHHH
Q 018241 195 IEKRMEKLKKG--KAKDSQSKLKEDAEKAALEKIQQ 228 (359)
Q Consensus 195 l~~~~~~~~~~--~~~~~~Sa~~~~~~~~ll~~i~~ 228 (359)
..+... .....+||+.+.++.++++.+.+
T Consensus 129 -----~~~~~~~~~~~~~~Sa~~~~gv~~~~~~i~~ 159 (160)
T cd04156 129 -----KKYCSDRDWYVQPCSAVTGEGLAEAFRKLAS 159 (160)
T ss_pred -----cccCCCCcEEEEecccccCCChHHHHHHHhc
Confidence 001100 01135789999999999887753
No 133
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=99.39 E-value=1.3e-12 Score=114.28 Aligned_cols=152 Identities=16% Similarity=0.128 Sum_probs=88.2
Q ss_pred CcEEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCCcCCC
Q 018241 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA 135 (359)
Q Consensus 56 ~~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~~~~ 135 (359)
.+||+++|.+|||||||+++++++.. .....|..+.+.....+.+...... .. ........+.+|||||..+..
T Consensus 4 ~~ki~ivG~~~vGKTsli~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~---~~--~~~~~~~~~~i~Dt~G~~~~~ 77 (180)
T cd04127 4 LIKFLALGDSGVGKTSFLYQYTDNKF-NPKFITTVGIDFREKRVVYNSSGPG---GT--LGRGQRIHLQLWDTAGQERFR 77 (180)
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCC-CccCCCccceEEEEEEEEEcCcccc---cc--ccCCCEEEEEEEeCCChHHHH
Confidence 47999999999999999999994433 2222222222222222332210000 00 000113568999999974322
Q ss_pred CcCcchhhhHhhHHHhcccceEEeecCC---------------------CccEEEeCCcccCCcchHHHHhhhhhccHHH
Q 018241 136 SQGEGLGNKFLSHIREVDSILQVVRCFE---------------------DNDIVHVNGKVDPKSDVDVINLELVFSDLDQ 194 (359)
Q Consensus 136 ~~~~~~~~~~l~~i~~aD~il~Vvd~~~---------------------~~~v~~v~nk~d~~~~~~~i~~el~~~d~~~ 194 (359)
. .....++++|++++|+|+++ +.+++.+.||.|.......... .
T Consensus 78 ~-------~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~v~~~--------~ 142 (180)
T cd04127 78 S-------LTTAFFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPDIVLCGNKADLEDQRQVSEE--------Q 142 (180)
T ss_pred H-------HHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCccchhcCccCHH--------H
Confidence 2 33456789999999999875 2357889999996542211111 1
Q ss_pred HHHHHHHHhhhccccccchhhHHHHHHHHHHHHHHh
Q 018241 195 IEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQAL 230 (359)
Q Consensus 195 l~~~~~~~~~~~~~~~~Sa~~~~~~~~ll~~i~~~L 230 (359)
......... .....+||+.+.++.++++.+.+.+
T Consensus 143 ~~~~~~~~~--~~~~e~Sak~~~~v~~l~~~l~~~~ 176 (180)
T cd04127 143 AKALADKYG--IPYFETSAATGTNVEKAVERLLDLV 176 (180)
T ss_pred HHHHHHHcC--CeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 111111111 1114679999999999998887654
No 134
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=99.39 E-value=1.5e-12 Score=111.00 Aligned_cols=141 Identities=16% Similarity=0.110 Sum_probs=85.6
Q ss_pred cEEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCCcCCCC
Q 018241 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGAS 136 (359)
Q Consensus 57 ~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~~~~~ 136 (359)
.||+++|.+|+|||||+|++++..... ...+.++.+.....+.+... ...+.+|||||......
T Consensus 1 ~ki~i~G~~~~GKStli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~D~~g~~~~~~ 64 (162)
T cd04123 1 FKVVLLGEGRVGKTSLVLRYVENKFNE-KHESTTQASFFQKTVNIGGK---------------RIDLAIWDTAGQERYHA 64 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCC-CcCCccceeEEEEEEEECCE---------------EEEEEEEECCchHHHHH
Confidence 489999999999999999999554432 22222222222333333211 24689999999643322
Q ss_pred cCcchhhhHhhHHHhcccceEEeecCCC--------------------ccEEEeCCcccCCcchHHHHhhhhhccHHHHH
Q 018241 137 QGEGLGNKFLSHIREVDSILQVVRCFED--------------------NDIVHVNGKVDPKSDVDVINLELVFSDLDQIE 196 (359)
Q Consensus 137 ~~~~~~~~~l~~i~~aD~il~Vvd~~~~--------------------~~v~~v~nk~d~~~~~~~i~~el~~~d~~~l~ 196 (359)
.....++++|++++|+|+++. .+++.+.||.|......... +.++
T Consensus 65 -------~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~D~~~~~~~~~--------~~~~ 129 (162)
T cd04123 65 -------LGPIYYRDADGAILVYDITDADSFQKVKKWIKELKQMRGNNISLVIVGNKIDLERQRVVSK--------SEAE 129 (162)
T ss_pred -------hhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCCCH--------HHHH
Confidence 222345789999999998762 35788899999763221111 1111
Q ss_pred HHHHHHhhhccccccchhhHHHHHHHHHHHHHHh
Q 018241 197 KRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQAL 230 (359)
Q Consensus 197 ~~~~~~~~~~~~~~~Sa~~~~~~~~ll~~i~~~L 230 (359)
+...... .....+|++++.++.++++.+...+
T Consensus 130 ~~~~~~~--~~~~~~s~~~~~gi~~~~~~l~~~~ 161 (162)
T cd04123 130 EYAKSVG--AKHFETSAKTGKGIEELFLSLAKRM 161 (162)
T ss_pred HHHHHcC--CEEEEEeCCCCCCHHHHHHHHHHHh
Confidence 1111111 1114678899889999888877654
No 135
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.39 E-value=1.1e-12 Score=112.91 Aligned_cols=134 Identities=18% Similarity=0.198 Sum_probs=83.2
Q ss_pred cEEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCCcCCCC
Q 018241 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGAS 136 (359)
Q Consensus 57 ~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~~~~~ 136 (359)
+||+++|.+|||||||++++..+... +..| |.......+.+. ..++.+|||||..+...
T Consensus 1 ~kv~~~G~~~~GKTsli~~l~~~~~~--~~~p--t~g~~~~~~~~~-----------------~~~~~l~D~~G~~~~~~ 59 (159)
T cd04150 1 MRILMVGLDAAGKTTILYKLKLGEIV--TTIP--TIGFNVETVEYK-----------------NISFTVWDVGGQDKIRP 59 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCc--ccCC--CCCcceEEEEEC-----------------CEEEEEEECCCCHhHHH
Confidence 58999999999999999999744332 2222 222222223332 36799999999854322
Q ss_pred cCcchhhhHhhHHHhcccceEEeecCCC---------------------ccEEEeCCcccCCcch--HHHHhhhhhccHH
Q 018241 137 QGEGLGNKFLSHIREVDSILQVVRCFED---------------------NDIVHVNGKVDPKSDV--DVINLELVFSDLD 193 (359)
Q Consensus 137 ~~~~~~~~~l~~i~~aD~il~Vvd~~~~---------------------~~v~~v~nk~d~~~~~--~~i~~el~~~d~~ 193 (359)
.+...+++||++++|+|+++. .+++.+.||.|..... ..+..++.+..
T Consensus 60 -------~~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~-- 130 (159)
T cd04150 60 -------LWRHYFQNTQGLIFVVDSNDRERIGEAREELQRMLNEDELRDAVLLVFANKQDLPNAMSAAEVTDKLGLHS-- 130 (159)
T ss_pred -------HHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCCCCCCHHHHHHHhCccc--
Confidence 344567999999999998761 4678899999964321 11111110000
Q ss_pred HHHHHHHHHhhhccccccchhhHHHHHHHHHHHH
Q 018241 194 QIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQ 227 (359)
Q Consensus 194 ~l~~~~~~~~~~~~~~~~Sa~~~~~~~~ll~~i~ 227 (359)
+. ........+||+++.++.++++.+.
T Consensus 131 -~~------~~~~~~~~~Sak~g~gv~~~~~~l~ 157 (159)
T cd04150 131 -LR------NRNWYIQATCATSGDGLYEGLDWLS 157 (159)
T ss_pred -cC------CCCEEEEEeeCCCCCCHHHHHHHHh
Confidence 00 0001113679999999998887664
No 136
>PTZ00369 Ras-like protein; Provisional
Probab=99.39 E-value=2.5e-12 Score=113.91 Aligned_cols=142 Identities=15% Similarity=0.097 Sum_probs=88.6
Q ss_pred CcEEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCCcCCC
Q 018241 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA 135 (359)
Q Consensus 56 ~~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~~~~ 135 (359)
.+||+++|.+|||||||++++.++... ..+..|+.+.....+.+++. ...+.+|||||..+..
T Consensus 5 ~~Ki~iiG~~~~GKTsLi~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~---------------~~~l~i~Dt~G~~~~~ 67 (189)
T PTZ00369 5 EYKLVVVGGGGVGKSALTIQFIQNHFI--DEYDPTIEDSYRKQCVIDEE---------------TCLLDILDTAGQEEYS 67 (189)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCC--cCcCCchhhEEEEEEEECCE---------------EEEEEEEeCCCCccch
Confidence 479999999999999999999954432 12222222222223333321 2458899999986544
Q ss_pred CcCcchhhhHhhHHHhcccceEEeecCCC---------------------ccEEEeCCcccCCcchHHHHhhhhhccHHH
Q 018241 136 SQGEGLGNKFLSHIREVDSILQVVRCFED---------------------NDIVHVNGKVDPKSDVDVINLELVFSDLDQ 194 (359)
Q Consensus 136 ~~~~~~~~~~l~~i~~aD~il~Vvd~~~~---------------------~~v~~v~nk~d~~~~~~~i~~el~~~d~~~ 194 (359)
. .....++.+|++++|+|+++. .+++.+.||+|...+...-.. .
T Consensus 68 ~-------l~~~~~~~~d~iilv~D~s~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~i~~~--------~ 132 (189)
T PTZ00369 68 A-------MRDQYMRTGQGFLCVYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCDLDSERQVSTG--------E 132 (189)
T ss_pred h-------hHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHH--------H
Confidence 3 233456889999999998762 257888999995432211111 0
Q ss_pred HHHHHHHHhhhccccccchhhHHHHHHHHHHHHHHhc
Q 018241 195 IEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALM 231 (359)
Q Consensus 195 l~~~~~~~~~~~~~~~~Sa~~~~~~~~ll~~i~~~L~ 231 (359)
......... .....+||+++.++.++++.+.+.+.
T Consensus 133 ~~~~~~~~~--~~~~e~Sak~~~gi~~~~~~l~~~l~ 167 (189)
T PTZ00369 133 GQELAKSFG--IPFLETSAKQRVNVDEAFYELVREIR 167 (189)
T ss_pred HHHHHHHhC--CEEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 111111111 11146789999999999988887774
No 137
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.39 E-value=2.5e-12 Score=110.07 Aligned_cols=141 Identities=15% Similarity=0.125 Sum_probs=89.7
Q ss_pred cEEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCCcCCCC
Q 018241 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGAS 136 (359)
Q Consensus 57 ~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~~~~~ 136 (359)
+||+++|.||||||||+|++++.... ..+.+++.+........++. ...+.+|||||......
T Consensus 1 ~ki~~~G~~~~GKTsl~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~---------------~~~~~i~D~~g~~~~~~ 63 (164)
T cd04139 1 YKVIVVGAGGVGKSALTLQFMYDEFV--EDYEPTKADSYRKKVVLDGE---------------DVQLNILDTAGQEDYAA 63 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCc--cccCCcchhhEEEEEEECCE---------------EEEEEEEECCChhhhhH
Confidence 48999999999999999999954433 24444554333333333221 24689999999854432
Q ss_pred cCcchhhhHhhHHHhcccceEEeecCC---------------------CccEEEeCCcccCCcchHHHHhhhhhccHHHH
Q 018241 137 QGEGLGNKFLSHIREVDSILQVVRCFE---------------------DNDIVHVNGKVDPKSDVDVINLELVFSDLDQI 195 (359)
Q Consensus 137 ~~~~~~~~~l~~i~~aD~il~Vvd~~~---------------------~~~v~~v~nk~d~~~~~~~i~~el~~~d~~~l 195 (359)
.....++.+|++++|+|..+ +.+++.+.||+|....... .....
T Consensus 64 -------~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~~~~~~--------~~~~~ 128 (164)
T cd04139 64 -------IRDNYHRSGEGFLLVFSITDMESFTATAEFREQILRVKDDDNVPLLLVGNKCDLEDKRQV--------SSEEA 128 (164)
T ss_pred -------HHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEcccccccccc--------CHHHH
Confidence 23345688999999999765 2467899999997641111 00011
Q ss_pred HHHHHHHhhhccccccchhhHHHHHHHHHHHHHHhc
Q 018241 196 EKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALM 231 (359)
Q Consensus 196 ~~~~~~~~~~~~~~~~Sa~~~~~~~~ll~~i~~~L~ 231 (359)
........ .....+|++++.++.++++.+.+.+.
T Consensus 129 ~~~~~~~~--~~~~~~Sa~~~~gi~~l~~~l~~~~~ 162 (164)
T cd04139 129 ANLARQWG--VPYVETSAKTRQNVEKAFYDLVREIR 162 (164)
T ss_pred HHHHHHhC--CeEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 11111111 11146789999999999999887764
No 138
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.39 E-value=3.1e-12 Score=110.85 Aligned_cols=141 Identities=18% Similarity=0.137 Sum_probs=86.2
Q ss_pred cEEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCCcCCCC
Q 018241 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGAS 136 (359)
Q Consensus 57 ~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~~~~~ 136 (359)
++|+++|.||||||||+++++++... ..+..++.+.....+.+++. ...+.+|||||..+...
T Consensus 2 ~ki~liG~~~~GKTsli~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~---------------~~~~~i~Dt~G~~~~~~ 64 (168)
T cd04177 2 YKIVVLGAGGVGKSALTVQFVQNVFI--ESYDPTIEDSYRKQVEIDGR---------------QCDLEILDTAGTEQFTA 64 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCC--cccCCcchheEEEEEEECCE---------------EEEEEEEeCCCcccchh
Confidence 68999999999999999999955432 22333332222222333221 24689999999865543
Q ss_pred cCcchhhhHhhHHHhcccceEEeecCC---------------------CccEEEeCCcccCCcchHHHHhhhhhccHHHH
Q 018241 137 QGEGLGNKFLSHIREVDSILQVVRCFE---------------------DNDIVHVNGKVDPKSDVDVINLELVFSDLDQI 195 (359)
Q Consensus 137 ~~~~~~~~~l~~i~~aD~il~Vvd~~~---------------------~~~v~~v~nk~d~~~~~~~i~~el~~~d~~~l 195 (359)
.....++.+|++++|+|.++ +.|++.+.||.|.......... +...+
T Consensus 65 -------~~~~~~~~~~~~vlv~~~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D~~~~~~~~~~-----~~~~~ 132 (168)
T cd04177 65 -------MRELYIKSGQGFLLVYSVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADLEDDRQVSRE-----DGVSL 132 (168)
T ss_pred -------hhHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCCEEEEEEChhccccCccCHH-----HHHHH
Confidence 22334577999999999765 2357788999986532211111 00111
Q ss_pred HHHHHHHhhhccccccchhhHHHHHHHHHHHHHHh
Q 018241 196 EKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQAL 230 (359)
Q Consensus 196 ~~~~~~~~~~~~~~~~Sa~~~~~~~~ll~~i~~~L 230 (359)
.+. . .......+||+.+.++.++++.+.+.+
T Consensus 133 ~~~---~-~~~~~~~~SA~~~~~i~~~f~~i~~~~ 163 (168)
T cd04177 133 SQQ---W-GNVPFYETSARKRTNVDEVFIDLVRQI 163 (168)
T ss_pred HHH---c-CCceEEEeeCCCCCCHHHHHHHHHHHH
Confidence 111 1 101114678999999999998887665
No 139
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.39 E-value=1.1e-12 Score=111.78 Aligned_cols=138 Identities=16% Similarity=0.123 Sum_probs=90.0
Q ss_pred EEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCCcCCCCc
Q 018241 58 RAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGASQ 137 (359)
Q Consensus 58 ~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~~~~~~ 137 (359)
||+++|.+|||||||+|++++.. ..+.+..++.+.....+..+.. ...+.+||+||......
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~l~D~~g~~~~~~- 62 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGT--FVEEYDPTIEDSYRKTIVVDGE---------------TYTLDILDTAGQEEFSA- 62 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCC--CCcCcCCChhHeEEEEEEECCE---------------EEEEEEEECCChHHHHH-
Confidence 68999999999999999999554 3445565665555554544321 24689999999754222
Q ss_pred CcchhhhHhhHHHhcccceEEeecCC---------------------CccEEEeCCcccCCcchHHHHhhhhhccHHHHH
Q 018241 138 GEGLGNKFLSHIREVDSILQVVRCFE---------------------DNDIVHVNGKVDPKSDVDVINLELVFSDLDQIE 196 (359)
Q Consensus 138 ~~~~~~~~l~~i~~aD~il~Vvd~~~---------------------~~~v~~v~nk~d~~~~~~~i~~el~~~d~~~l~ 196 (359)
.....++.+|++++|+|..+ ..+++.+.||+|........ .+.++
T Consensus 63 ------~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~--------~~~~~ 128 (160)
T cd00876 63 ------MRDLYIRQGDGFILVYSITDRESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLENERQVS--------KEEGK 128 (160)
T ss_pred ------HHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCcccccceec--------HHHHH
Confidence 33455688999999999865 24678899999976421111 01111
Q ss_pred HHHHHHhhhccccccchhhHHHHHHHHHHHHHH
Q 018241 197 KRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQA 229 (359)
Q Consensus 197 ~~~~~~~~~~~~~~~Sa~~~~~~~~ll~~i~~~ 229 (359)
....... .....+|++.+.++.++++.+...
T Consensus 129 ~~~~~~~--~~~~~~S~~~~~~i~~l~~~l~~~ 159 (160)
T cd00876 129 ALAKEWG--CPFIETSAKDNINIDEVFKLLVRE 159 (160)
T ss_pred HHHHHcC--CcEEEeccCCCCCHHHHHHHHHhh
Confidence 1111111 111467889888998988887754
No 140
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.38 E-value=3.6e-12 Score=110.91 Aligned_cols=144 Identities=14% Similarity=0.061 Sum_probs=90.8
Q ss_pred CCcEEEEEecCCCChhHHHHHHHhccccccCCCCceeccc-eeEEEEeCCCccchhccccccccccCceEEEEecCCCcC
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEP-NVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVK 133 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~-~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~~ 133 (359)
..+||+++|.+|||||||+++++++... +..+..|+... ....+.+++. ...+.+|||+|...
T Consensus 3 ~~~kv~~vG~~~vGKTsli~~~~~~~f~-~~~~~~T~~~~~~~~~~~~~~~---------------~~~l~~~d~~g~~~ 66 (169)
T cd01892 3 NVFLCFVLGAKGSGKSALLRAFLGRSFS-LNAYSPTIKPRYAVNTVEVYGQ---------------EKYLILREVGEDEV 66 (169)
T ss_pred eEEEEEEECCCCCcHHHHHHHHhCCCCC-cccCCCccCcceEEEEEEECCe---------------EEEEEEEecCCccc
Confidence 3479999999999999999999965543 23444443222 2223444331 24588999999865
Q ss_pred CCCcCcchhhhHhhHHHhcccceEEeecCC------------------CccEEEeCCcccCCcchHHHHhhhhhccHHHH
Q 018241 134 GASQGEGLGNKFLSHIREVDSILQVVRCFE------------------DNDIVHVNGKVDPKSDVDVINLELVFSDLDQI 195 (359)
Q Consensus 134 ~~~~~~~~~~~~l~~i~~aD~il~Vvd~~~------------------~~~v~~v~nk~d~~~~~~~i~~el~~~d~~~l 195 (359)
... .....+++||++++|+|+++ +.|++.+.||.|........ ....+.+
T Consensus 67 ~~~-------~~~~~~~~~d~~llv~d~~~~~s~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~~-----~~~~~~~ 134 (169)
T cd01892 67 AIL-------LNDAELAACDVACLVYDSSDPKSFSYCAEVYKKYFMLGEIPCLFVAAKADLDEQQQRY-----EVQPDEF 134 (169)
T ss_pred ccc-------cchhhhhcCCEEEEEEeCCCHHHHHHHHHHHHHhccCCCCeEEEEEEccccccccccc-----ccCHHHH
Confidence 432 22344689999999999876 23678899999965332111 1111111
Q ss_pred HHHHHHHhhhccccccchhhHHHHHHHHHHHHHHh
Q 018241 196 EKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQAL 230 (359)
Q Consensus 196 ~~~~~~~~~~~~~~~~Sa~~~~~~~~ll~~i~~~L 230 (359)
.+. +. ......+||+++.++.++++.+.+.+
T Consensus 135 ~~~---~~-~~~~~~~Sa~~~~~v~~lf~~l~~~~ 165 (169)
T cd01892 135 CRK---LG-LPPPLHFSSKLGDSSNELFTKLATAA 165 (169)
T ss_pred HHH---cC-CCCCEEEEeccCccHHHHHHHHHHHh
Confidence 111 11 10114678999999999999888776
No 141
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.38 E-value=2.6e-12 Score=111.61 Aligned_cols=148 Identities=16% Similarity=0.121 Sum_probs=86.6
Q ss_pred cEEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCCcCCCC
Q 018241 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGAS 136 (359)
Q Consensus 57 ~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~~~~~ 136 (359)
+||+++|.+|+|||||+++++++... ..+..++.+.....+.+++. ...+.+|||||......
T Consensus 1 ~ki~i~G~~~~GKTsl~~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~---------------~~~~~i~Dt~G~~~~~~ 63 (174)
T cd04135 1 LKCVVVGDGAVGKTCLLMSYANDAFP--EEYVPTVFDHYAVSVTVGGK---------------QYLLGLYDTAGQEDYDR 63 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCC--CCCCCceeeeeEEEEEECCE---------------EEEEEEEeCCCcccccc
Confidence 48999999999999999999955432 22333332222223334331 13478999999865433
Q ss_pred cCcchhhhHhhHHHhcccceEEeecCCC--------------------ccEEEeCCcccCCcchHHHHhh--hh--hccH
Q 018241 137 QGEGLGNKFLSHIREVDSILQVVRCFED--------------------NDIVHVNGKVDPKSDVDVINLE--LV--FSDL 192 (359)
Q Consensus 137 ~~~~~~~~~l~~i~~aD~il~Vvd~~~~--------------------~~v~~v~nk~d~~~~~~~i~~e--l~--~~d~ 192 (359)
.. ...++.+|++++|+|..+. .+++.+.||+|...+....... +. ....
T Consensus 64 ~~-------~~~~~~~~~~ilv~~~~~~~s~~~~~~~~~~~l~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~v~~ 136 (174)
T cd04135 64 LR-------PLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPYLLVGTQIDLRDDPKTLARLNDMKEKPVTV 136 (174)
T ss_pred cc-------cccCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeEchhhhcChhhHHHHhhccCCCCCH
Confidence 11 1234678999999997652 3578889999965443221110 00 0111
Q ss_pred HHHHHHHHHHhhhccccccchhhHHHHHHHHHHHHHH
Q 018241 193 DQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQA 229 (359)
Q Consensus 193 ~~l~~~~~~~~~~~~~~~~Sa~~~~~~~~ll~~i~~~ 229 (359)
+........+.. .....+||+++.++.++++.+...
T Consensus 137 ~~~~~~~~~~~~-~~~~e~Sa~~~~gi~~~f~~~~~~ 172 (174)
T cd04135 137 EQGQKLAKEIGA-HCYVECSALTQKGLKTVFDEAILA 172 (174)
T ss_pred HHHHHHHHHcCC-CEEEEecCCcCCCHHHHHHHHHHH
Confidence 111111111111 111467899999999999887764
No 142
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.38 E-value=1.9e-12 Score=109.33 Aligned_cols=138 Identities=14% Similarity=0.130 Sum_probs=83.5
Q ss_pred cEEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCCcCCCC
Q 018241 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGAS 136 (359)
Q Consensus 57 ~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~~~~~ 136 (359)
++|+++|.||||||||+|++++...... ..+..+.+.....+..+.. ...+.+||+||......
T Consensus 1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~-~~~t~~~~~~~~~~~~~~~---------------~~~~~l~D~~g~~~~~~ 64 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFVDGKFDEN-YKSTIGVDFKSKTIEIDGK---------------TVKLQIWDTAGQERFRS 64 (159)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCc-cCCceeeeeEEEEEEECCE---------------EEEEEEEecCChHHHHH
Confidence 4899999999999999999995554432 2333332233333333211 24689999999843222
Q ss_pred cCcchhhhHhhHHHhcccceEEeecCCC--------------------ccEEEeCCcccCCcchHHHHhhhhhccHHHHH
Q 018241 137 QGEGLGNKFLSHIREVDSILQVVRCFED--------------------NDIVHVNGKVDPKSDVDVINLELVFSDLDQIE 196 (359)
Q Consensus 137 ~~~~~~~~~l~~i~~aD~il~Vvd~~~~--------------------~~v~~v~nk~d~~~~~~~i~~el~~~d~~~l~ 196 (359)
.....++++|++++|+|+++. .+++.+.||+|...+...... .+.
T Consensus 65 -------~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~--------~~~ 129 (159)
T cd00154 65 -------ITPSYYRGAHGAILVYDITNRESFENLDKWLKELKEYAPENIPIILVGNKIDLEDQRQVSTE--------EAQ 129 (159)
T ss_pred -------HHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccccccccccHH--------HHH
Confidence 345567889999999999762 357788899987522211111 111
Q ss_pred HHHHHHhhhccccccchhhHHHHHHHHHHHH
Q 018241 197 KRMEKLKKGKAKDSQSKLKEDAEKAALEKIQ 227 (359)
Q Consensus 197 ~~~~~~~~~~~~~~~Sa~~~~~~~~ll~~i~ 227 (359)
+..... ......+|++.+.++.++++.+.
T Consensus 130 ~~~~~~--~~~~~~~sa~~~~~i~~~~~~i~ 158 (159)
T cd00154 130 QFAKEN--GLLFFETSAKTGENVEELFQSLA 158 (159)
T ss_pred HHHHHc--CCeEEEEecCCCCCHHHHHHHHh
Confidence 111110 11114567777777777776653
No 143
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.38 E-value=1.1e-12 Score=115.81 Aligned_cols=139 Identities=17% Similarity=0.177 Sum_probs=89.0
Q ss_pred CCcEEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCCcCC
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~~~ 134 (359)
...+|+++|.+|||||||++++..+.... ..| |...+...+... ...+.+|||||....
T Consensus 16 ~~~kv~lvG~~~vGKTsli~~~~~~~~~~--~~~--T~~~~~~~~~~~-----------------~~~~~l~D~~G~~~~ 74 (182)
T PTZ00133 16 KEVRILMVGLDAAGKTTILYKLKLGEVVT--TIP--TIGFNVETVEYK-----------------NLKFTMWDVGGQDKL 74 (182)
T ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCccc--cCC--ccccceEEEEEC-----------------CEEEEEEECCCCHhH
Confidence 35799999999999999999997443321 122 222222333332 367999999998532
Q ss_pred CCcCcchhhhHhhHHHhcccceEEeecCC---------------------CccEEEeCCcccCCcc--hHHHHhhhhhcc
Q 018241 135 ASQGEGLGNKFLSHIREVDSILQVVRCFE---------------------DNDIVHVNGKVDPKSD--VDVINLELVFSD 191 (359)
Q Consensus 135 ~~~~~~~~~~~l~~i~~aD~il~Vvd~~~---------------------~~~v~~v~nk~d~~~~--~~~i~~el~~~d 191 (359)
.. .....++++|++++|+|+++ +.+++.+.||.|.... ...+..++.+..
T Consensus 75 ~~-------~~~~~~~~ad~iI~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~l~~~~ 147 (182)
T PTZ00133 75 RP-------LWRHYYQNTNGLIFVVDSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDLPNAMSTTEVTEKLGLHS 147 (182)
T ss_pred HH-------HHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCCCCCCHHHHHHHhCCCc
Confidence 22 34556789999999999976 1367889999996432 122222221111
Q ss_pred HHHHHHHHHHHhhh-ccccccchhhHHHHHHHHHHHHHHhc
Q 018241 192 LDQIEKRMEKLKKG-KAKDSQSKLKEDAEKAALEKIQQALM 231 (359)
Q Consensus 192 ~~~l~~~~~~~~~~-~~~~~~Sa~~~~~~~~ll~~i~~~L~ 231 (359)
.... .....+||+++.++.++++.+.+.+.
T Consensus 148 ----------~~~~~~~~~~~Sa~tg~gv~e~~~~l~~~i~ 178 (182)
T PTZ00133 148 ----------VRQRNWYIQGCCATTAQGLYEGLDWLSANIK 178 (182)
T ss_pred ----------ccCCcEEEEeeeCCCCCCHHHHHHHHHHHHH
Confidence 0000 01135689999999999998887763
No 144
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=99.37 E-value=3.7e-12 Score=112.86 Aligned_cols=146 Identities=12% Similarity=0.099 Sum_probs=87.2
Q ss_pred cEEEEEecCCCChhHHHHHHHhccccccCCCCceeccce-eEEEEeCCCccchhccccccccccCceEEEEecCCCcCCC
Q 018241 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPN-VGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA 135 (359)
Q Consensus 57 ~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~-~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~~~~ 135 (359)
+||+++|.+|||||||+|+++++.. ..+++..|+.... ...+.+++. ...+.+|||||.....
T Consensus 1 ~ki~vvG~~~vGKSsLi~~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~---------------~~~l~i~D~~G~~~~~ 64 (193)
T cd04118 1 VKVVMLGKESVGKTSLVERYVHHRF-LVGPYQNTIGAAFVAKRMVVGER---------------VVTLGIWDTAGSERYE 64 (193)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCc-CCcCcccceeeEEEEEEEEECCE---------------EEEEEEEECCCchhhh
Confidence 4899999999999999999995433 3333333332111 223344331 1357899999985432
Q ss_pred CcCcchhhhHhhHHHhcccceEEeecCCC-------------------ccEEEeCCcccCCcchHHHHhhhhhccHHHHH
Q 018241 136 SQGEGLGNKFLSHIREVDSILQVVRCFED-------------------NDIVHVNGKVDPKSDVDVINLELVFSDLDQIE 196 (359)
Q Consensus 136 ~~~~~~~~~~l~~i~~aD~il~Vvd~~~~-------------------~~v~~v~nk~d~~~~~~~i~~el~~~d~~~l~ 196 (359)
. .....++.+|++++|+|+++. .+++.+.||.|....... .. ......+.
T Consensus 65 ~-------~~~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~-~~---~v~~~~~~ 133 (193)
T cd04118 65 A-------MSRIYYRGAKAAIVCYDLTDSSSFERAKFWVKELQNLEEHCKIYLCGTKSDLIEQDRS-LR---QVDFHDVQ 133 (193)
T ss_pred h-------hhHhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHhcCCCCCEEEEEEcccccccccc-cC---ccCHHHHH
Confidence 2 122345689999999998652 357899999996532110 00 00111111
Q ss_pred HHHHHHhhhccccccchhhHHHHHHHHHHHHHHhc
Q 018241 197 KRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALM 231 (359)
Q Consensus 197 ~~~~~~~~~~~~~~~Sa~~~~~~~~ll~~i~~~L~ 231 (359)
....... .....+||+.+.++.++++.+.+.+-
T Consensus 134 ~~~~~~~--~~~~~~Sa~~~~gv~~l~~~i~~~~~ 166 (193)
T cd04118 134 DFADEIK--AQHFETSSKTGQNVDELFQKVAEDFV 166 (193)
T ss_pred HHHHHcC--CeEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 1111111 11146789999999999988887763
No 145
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=99.37 E-value=4.1e-12 Score=109.73 Aligned_cols=138 Identities=14% Similarity=0.126 Sum_probs=83.0
Q ss_pred cEEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCCcCCCC
Q 018241 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGAS 136 (359)
Q Consensus 57 ~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~~~~~ 136 (359)
.+|+++|.+|||||||+|+++++.... ...| ++.......+.... ....+.+|||||......
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~~~f~~-~~~~-t~~~~~~~~~~~~~---------------~~~~l~i~Dt~G~~~~~~ 64 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKGTFRE-SYIP-TIEDTYRQVISCSK---------------NICTLQITDTTGSHQFPA 64 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCC-CcCC-cchheEEEEEEECC---------------EEEEEEEEECCCCCcchH
Confidence 689999999999999999999554321 1111 11111111111111 135689999999865432
Q ss_pred cCcchhhhHhhHHHhcccceEEeecCC-----------------------CccEEEeCCcccCCcchHHHHhhhhhccHH
Q 018241 137 QGEGLGNKFLSHIREVDSILQVVRCFE-----------------------DNDIVHVNGKVDPKSDVDVINLELVFSDLD 193 (359)
Q Consensus 137 ~~~~~~~~~l~~i~~aD~il~Vvd~~~-----------------------~~~v~~v~nk~d~~~~~~~i~~el~~~d~~ 193 (359)
.....++.+|++++|+|.++ +.+++.+.||.|..+..+.... +
T Consensus 65 -------~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~-----~-- 130 (165)
T cd04140 65 -------MQRLSISKGHAFILVYSVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESHKREVSSN-----E-- 130 (165)
T ss_pred -------HHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccccCeecHH-----H--
Confidence 22345678999999999865 1357889999997542211111 0
Q ss_pred HHHHHHHHHhhhccccccchhhHHHHHHHHHHHHH
Q 018241 194 QIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQ 228 (359)
Q Consensus 194 ~l~~~~~~~~~~~~~~~~Sa~~~~~~~~ll~~i~~ 228 (359)
..+..... . .....+||+.+.++.++++.+..
T Consensus 131 -~~~~~~~~-~-~~~~e~SA~~g~~v~~~f~~l~~ 162 (165)
T cd04140 131 -GAACATEW-N-CAFMETSAKTNHNVQELFQELLN 162 (165)
T ss_pred -HHHHHHHh-C-CcEEEeecCCCCCHHHHHHHHHh
Confidence 01101111 1 11146799999999999888764
No 146
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=99.37 E-value=3.1e-12 Score=110.26 Aligned_cols=140 Identities=16% Similarity=0.153 Sum_probs=85.2
Q ss_pred cEEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCCcCCCC
Q 018241 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGAS 136 (359)
Q Consensus 57 ~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~~~~~ 136 (359)
++|+++|.+|||||||+++++++... ....|....+.....+.+.+. ...+.+|||||......
T Consensus 1 ~ki~vvG~~~~GKTsli~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~---------------~~~l~i~D~~g~~~~~~ 64 (161)
T cd04117 1 FRLLLIGDSGVGKTCLLCRFTDNEFH-SSHISTIGVDFKMKTIEVDGI---------------KVRIQIWDTAGQERYQT 64 (161)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCC-CCCCCceeeEEEEEEEEECCE---------------EEEEEEEeCCCcHhHHh
Confidence 48999999999999999999955432 222222222222223333321 24688999999754332
Q ss_pred cCcchhhhHhhHHHhcccceEEeecCCC--------------------ccEEEeCCcccCCcchHHHHhhhhhccHHHHH
Q 018241 137 QGEGLGNKFLSHIREVDSILQVVRCFED--------------------NDIVHVNGKVDPKSDVDVINLELVFSDLDQIE 196 (359)
Q Consensus 137 ~~~~~~~~~l~~i~~aD~il~Vvd~~~~--------------------~~v~~v~nk~d~~~~~~~i~~el~~~d~~~l~ 196 (359)
.....++++|++++|+|.++. .+++.+.||.|.......... ...
T Consensus 65 -------~~~~~~~~~~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~v~~~--------~~~ 129 (161)
T cd04117 65 -------ITKQYYRRAQGIFLVYDISSERSYQHIMKWVSDVDEYAPEGVQKILIGNKADEEQKRQVGDE--------QGN 129 (161)
T ss_pred -------hHHHHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCCCHH--------HHH
Confidence 234456899999999997662 357888999986532211111 001
Q ss_pred HHHHHHhhhccccccchhhHHHHHHHHHHHHHH
Q 018241 197 KRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQA 229 (359)
Q Consensus 197 ~~~~~~~~~~~~~~~Sa~~~~~~~~ll~~i~~~ 229 (359)
. +.+... .....+||+.+.++.+++..+.+.
T Consensus 130 ~-~~~~~~-~~~~e~Sa~~~~~v~~~f~~l~~~ 160 (161)
T cd04117 130 K-LAKEYG-MDFFETSACTNSNIKESFTRLTEL 160 (161)
T ss_pred H-HHHHcC-CEEEEEeCCCCCCHHHHHHHHHhh
Confidence 1 111111 111567899999999998887654
No 147
>PRK09866 hypothetical protein; Provisional
Probab=99.37 E-value=3.8e-12 Score=128.78 Aligned_cols=100 Identities=12% Similarity=0.118 Sum_probs=64.6
Q ss_pred CceEEEEecCCCcCCCCcCcchhhhHhhHHHhcccceEEeecCC----------------C--ccEEEeCCcccCCcchH
Q 018241 120 PASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFE----------------D--NDIVHVNGKVDPKSDVD 181 (359)
Q Consensus 120 ~~~i~lvDtpG~~~~~~~~~~~~~~~l~~i~~aD~il~Vvd~~~----------------~--~~v~~v~nk~d~~~~~~ 181 (359)
..+++|+||||+.+.... .+.......+.+||+|++|+|+.. + .+++.++||+|.....+
T Consensus 229 ~~QIIFVDTPGIhk~~~~--~L~k~M~eqL~eADvVLFVVDat~~~s~~DeeIlk~Lkk~~K~~PVILVVNKIDl~dree 306 (741)
T PRK09866 229 PGQLTLLDTPGPNEAGQP--HLQKMLNQQLARASAVLAVLDYTQLKSISDEEVREAILAVGQSVPLYVLVNKFDQQDRNS 306 (741)
T ss_pred cCCEEEEECCCCCCccch--HHHHHHHHHHhhCCEEEEEEeCCCCCChhHHHHHHHHHhcCCCCCEEEEEEcccCCCccc
Confidence 368999999999864332 234444567999999999999876 1 26888999999753211
Q ss_pred HHHhhhhhccHHHHHHHHHHH-h---h-hccccccchhhHHHHHHHHHHHHHH
Q 018241 182 VINLELVFSDLDQIEKRMEKL-K---K-GKAKDSQSKLKEDAEKAALEKIQQA 229 (359)
Q Consensus 182 ~i~~el~~~d~~~l~~~~~~~-~---~-~~~~~~~Sa~~~~~~~~ll~~i~~~ 229 (359)
.. .+.+....... . . .....++||+.+.++..+++.+.++
T Consensus 307 dd--------kE~Lle~V~~~L~q~~i~f~eIfPVSAlkG~nid~LLdeI~~~ 351 (741)
T PRK09866 307 DD--------ADQVRALISGTLMKGCITPQQIFPVSSMWGYLANRARHELANN 351 (741)
T ss_pred ch--------HHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHhC
Confidence 10 11122221111 1 1 1112689999999999999888763
No 148
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.37 E-value=1.3e-12 Score=115.17 Aligned_cols=139 Identities=19% Similarity=0.221 Sum_probs=88.1
Q ss_pred CCcEEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCCcCC
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~~~ 134 (359)
..++|.++|.+|||||||+++++.+.... ..| |...+...+... ...+.+|||||....
T Consensus 16 ~~~ki~ivG~~~~GKTsl~~~l~~~~~~~--~~p--t~g~~~~~~~~~-----------------~~~~~i~D~~Gq~~~ 74 (181)
T PLN00223 16 KEMRILMVGLDAAGKTTILYKLKLGEIVT--TIP--TIGFNVETVEYK-----------------NISFTVWDVGGQDKI 74 (181)
T ss_pred CccEEEEECCCCCCHHHHHHHHccCCCcc--ccC--CcceeEEEEEEC-----------------CEEEEEEECCCCHHH
Confidence 34799999999999999999998443321 112 222222223222 357999999997432
Q ss_pred CCcCcchhhhHhhHHHhcccceEEeecCC---------------------CccEEEeCCcccCCcchHHHHhhhhhccHH
Q 018241 135 ASQGEGLGNKFLSHIREVDSILQVVRCFE---------------------DNDIVHVNGKVDPKSDVDVINLELVFSDLD 193 (359)
Q Consensus 135 ~~~~~~~~~~~l~~i~~aD~il~Vvd~~~---------------------~~~v~~v~nk~d~~~~~~~i~~el~~~d~~ 193 (359)
. ..+...++++|++++|+|+++ +.+++.+.||.|...... .+
T Consensus 75 ~-------~~~~~~~~~a~~iI~V~D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~~~----------~~ 137 (181)
T PLN00223 75 R-------PLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN----------AA 137 (181)
T ss_pred H-------HHHHHHhccCCEEEEEEeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCCCCCC----------HH
Confidence 2 234556789999999999986 235788999999543221 11
Q ss_pred HHHHHHHH--Hh-hhccccccchhhHHHHHHHHHHHHHHhc
Q 018241 194 QIEKRMEK--LK-KGKAKDSQSKLKEDAEKAALEKIQQALM 231 (359)
Q Consensus 194 ~l~~~~~~--~~-~~~~~~~~Sa~~~~~~~~ll~~i~~~L~ 231 (359)
.+.+.+.. +. +......+||+++.++.++++.+.+.+.
T Consensus 138 ~~~~~l~l~~~~~~~~~~~~~Sa~~g~gv~e~~~~l~~~~~ 178 (181)
T PLN00223 138 EITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIA 178 (181)
T ss_pred HHHHHhCccccCCCceEEEeccCCCCCCHHHHHHHHHHHHh
Confidence 12222210 00 0001135799999999999999887774
No 149
>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]
Probab=99.37 E-value=1.1e-13 Score=134.72 Aligned_cols=105 Identities=22% Similarity=0.287 Sum_probs=84.2
Q ss_pred cCCcEEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCCcC
Q 018241 54 SMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVK 133 (359)
Q Consensus 54 ~~~~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~~ 133 (359)
....++.|+|+|||||||++|.++ .....+.+|||||..-..|.+.+. +-.++++||||+.+
T Consensus 166 p~trTlllcG~PNVGKSSf~~~vt-radvevqpYaFTTksL~vGH~dyk-----------------YlrwQViDTPGILD 227 (620)
T KOG1490|consen 166 PNTRTLLVCGYPNVGKSSFNNKVT-RADDEVQPYAFTTKLLLVGHLDYK-----------------YLRWQVIDTPGILD 227 (620)
T ss_pred CCcCeEEEecCCCCCcHhhccccc-ccccccCCcccccchhhhhhhhhh-----------------eeeeeecCCccccC
Confidence 345799999999999999999999 999999999999998888887766 34599999999976
Q ss_pred CCCcCcc----hhhhHhhHHHhcccceEEeecCC---------------------CccEEEeCCcccCCc
Q 018241 134 GASQGEG----LGNKFLSHIREVDSILQVVRCFE---------------------DNDIVHVNGKVDPKS 178 (359)
Q Consensus 134 ~~~~~~~----~~~~~l~~i~~aD~il~Vvd~~~---------------------~~~v~~v~nk~d~~~ 178 (359)
..-+... ..-.+++|++.| ++|+.|.|+ +.+++.|+||+|..+
T Consensus 228 ~plEdrN~IEmqsITALAHLraa--VLYfmDLSe~CGySva~QvkLfhsIKpLFaNK~~IlvlNK~D~m~ 295 (620)
T KOG1490|consen 228 RPEEDRNIIEMQIITALAHLRSA--VLYFMDLSEMCGYSVAAQVKLYHSIKPLFANKVTILVLNKIDAMR 295 (620)
T ss_pred cchhhhhHHHHHHHHHHHHhhhh--heeeeechhhhCCCHHHHHHHHHHhHHHhcCCceEEEeecccccC
Confidence 5433221 112457888876 999999987 346899999999764
No 150
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.36 E-value=3.8e-12 Score=112.13 Aligned_cols=148 Identities=16% Similarity=0.096 Sum_probs=87.7
Q ss_pred cEEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCCcCCCC
Q 018241 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGAS 136 (359)
Q Consensus 57 ~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~~~~~ 136 (359)
+||+++|.+|||||||++++.++... ..+..++.+.....+..++.. ...+.+|||||..+...
T Consensus 1 ~ki~vvG~~~vGKTsli~~l~~~~~~--~~~~~t~~~~~~~~i~~~~~~--------------~~~l~i~Dt~G~~~~~~ 64 (187)
T cd04132 1 KKIVVVGDGGCGKTCLLIVYSQGKFP--EEYVPTVFENYVTNIQGPNGK--------------IIELALWDTAGQEEYDR 64 (187)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCC--CCCCCeeeeeeEEEEEecCCc--------------EEEEEEEECCCchhHHH
Confidence 48999999999999999999955432 223223322222233332111 24689999999753322
Q ss_pred cCcchhhhHhhHHHhcccceEEeecCC--------------------CccEEEeCCcccCCcchHHHHhhhhhccHHHHH
Q 018241 137 QGEGLGNKFLSHIREVDSILQVVRCFE--------------------DNDIVHVNGKVDPKSDVDVINLELVFSDLDQIE 196 (359)
Q Consensus 137 ~~~~~~~~~l~~i~~aD~il~Vvd~~~--------------------~~~v~~v~nk~d~~~~~~~i~~el~~~d~~~l~ 196 (359)
.....++.+|++++|+|+++ +.+++.+.||.|...+... .. .-..+..+
T Consensus 65 -------~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~-~~---~v~~~~~~ 133 (187)
T cd04132 65 -------LRPLSYPDVDVLLICYAVDNPTSLDNVEDKWFPEVNHFCPGTPIMLVGLKTDLRKDKNL-DR---KVTPAQAE 133 (187)
T ss_pred -------HHHHhCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhhhCccc-cC---CcCHHHHH
Confidence 22234578999999999876 2367889999996532210 00 00011111
Q ss_pred HHHHHHhhhccccccchhhHHHHHHHHHHHHHHhcC
Q 018241 197 KRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMD 232 (359)
Q Consensus 197 ~~~~~~~~~~~~~~~Sa~~~~~~~~ll~~i~~~L~~ 232 (359)
...... .......+||+.+.++.++++.+.+.+..
T Consensus 134 ~~~~~~-~~~~~~e~Sa~~~~~v~~~f~~l~~~~~~ 168 (187)
T cd04132 134 SVAKKQ-GAFAYLECSAKTMENVEEVFDTAIEEALK 168 (187)
T ss_pred HHHHHc-CCcEEEEccCCCCCCHHHHHHHHHHHHHh
Confidence 111111 11011467899999999999888877743
No 151
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=99.36 E-value=3e-12 Score=110.89 Aligned_cols=141 Identities=20% Similarity=0.104 Sum_probs=84.6
Q ss_pred CcEEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCCcCCC
Q 018241 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA 135 (359)
Q Consensus 56 ~~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~~~~ 135 (359)
.++|+++|.+|||||||+++++++.. .....+..+.+.....+.+.+. ...+.+|||||..+..
T Consensus 5 ~~ki~vvG~~~~GKTsli~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~---------------~~~l~i~D~~G~~~~~ 68 (170)
T cd04116 5 LLKVILLGDGGVGKSSLMNRYVTNKF-DTQLFHTIGVEFLNKDLEVDGH---------------FVTLQIWDTAGQERFR 68 (170)
T ss_pred EEEEEEECCCCCCHHHHHHHHHcCCC-CcCcCCceeeEEEEEEEEECCe---------------EEEEEEEeCCChHHHH
Confidence 47999999999999999999994433 2222222222222222333321 2468899999975432
Q ss_pred CcCcchhhhHhhHHHhcccceEEeecCCC------------------------ccEEEeCCcccCCcchHHHHhhhhhcc
Q 018241 136 SQGEGLGNKFLSHIREVDSILQVVRCFED------------------------NDIVHVNGKVDPKSDVDVINLELVFSD 191 (359)
Q Consensus 136 ~~~~~~~~~~l~~i~~aD~il~Vvd~~~~------------------------~~v~~v~nk~d~~~~~~~i~~el~~~d 191 (359)
. .....++.+|++++|+|..+. .+++.+.||.|... .....
T Consensus 69 ~-------~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~-~~~~~------- 133 (170)
T cd04116 69 S-------LRTPFYRGSDCCLLTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIPE-RQVST------- 133 (170)
T ss_pred H-------hHHHHhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECccccc-cccCH-------
Confidence 2 233456889999999987652 25678899999642 11101
Q ss_pred HHHHHHHHHHHhhhccccccchhhHHHHHHHHHHHHHH
Q 018241 192 LDQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQA 229 (359)
Q Consensus 192 ~~~l~~~~~~~~~~~~~~~~Sa~~~~~~~~ll~~i~~~ 229 (359)
+.+.+....... .....+||+.+.++.++++.+.+.
T Consensus 134 -~~~~~~~~~~~~-~~~~e~Sa~~~~~v~~~~~~~~~~ 169 (170)
T cd04116 134 -EEAQAWCRENGD-YPYFETSAKDATNVAAAFEEAVRR 169 (170)
T ss_pred -HHHHHHHHHCCC-CeEEEEECCCCCCHHHHHHHHHhh
Confidence 111221111111 111467899999999988877654
No 152
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.36 E-value=3.5e-12 Score=112.72 Aligned_cols=142 Identities=16% Similarity=0.093 Sum_probs=87.1
Q ss_pred cEEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCCcCCCC
Q 018241 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGAS 136 (359)
Q Consensus 57 ~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~~~~~ 136 (359)
+||+++|.+|||||||+|+++++.... ...|..+.+.....+.+++. ...+.+|||||......
T Consensus 1 ~ki~v~G~~~vGKSsli~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~---------------~~~~~i~Dt~g~~~~~~ 64 (188)
T cd04125 1 FKVVIIGDYGVGKSSLLKRFTEDEFSE-STKSTIGVDFKIKTVYIENK---------------IIKLQIWDTNGQERFRS 64 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCC-CCCCceeeEEEEEEEEECCE---------------EEEEEEEECCCcHHHHh
Confidence 489999999999999999999554422 11222222222223333321 24689999999743322
Q ss_pred cCcchhhhHhhHHHhcccceEEeecCC--------------------CccEEEeCCcccCCcchHHHHhhhhhccHHHHH
Q 018241 137 QGEGLGNKFLSHIREVDSILQVVRCFE--------------------DNDIVHVNGKVDPKSDVDVINLELVFSDLDQIE 196 (359)
Q Consensus 137 ~~~~~~~~~l~~i~~aD~il~Vvd~~~--------------------~~~v~~v~nk~d~~~~~~~i~~el~~~d~~~l~ 196 (359)
.....++.+|++++|+|+++ ..+++.+.||.|..++... .. +...
T Consensus 65 -------~~~~~~~~~d~iilv~d~~~~~s~~~i~~~~~~i~~~~~~~~~~ivv~nK~Dl~~~~~v-~~-------~~~~ 129 (188)
T cd04125 65 -------LNNSYYRGAHGYLLVYDVTDQESFENLKFWINEINRYARENVIKVIVANKSDLVNNKVV-DS-------NIAK 129 (188)
T ss_pred -------hHHHHccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCCCcccccC-CH-------HHHH
Confidence 34456688999999999876 2357889999997643211 11 0111
Q ss_pred HHHHHHhhhccccccchhhHHHHHHHHHHHHHHhc
Q 018241 197 KRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALM 231 (359)
Q Consensus 197 ~~~~~~~~~~~~~~~Sa~~~~~~~~ll~~i~~~L~ 231 (359)
. +..... .....+||+.+.++.++++.+.+.+.
T Consensus 130 ~-~~~~~~-~~~~evSa~~~~~i~~~f~~l~~~~~ 162 (188)
T cd04125 130 S-FCDSLN-IPFFETSAKQSINVEEAFILLVKLII 162 (188)
T ss_pred H-HHHHcC-CeEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 1 111001 11146788999999888888777764
No 153
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=99.36 E-value=4.1e-12 Score=111.31 Aligned_cols=146 Identities=18% Similarity=0.170 Sum_probs=87.7
Q ss_pred cEEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCCcCCCC
Q 018241 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGAS 136 (359)
Q Consensus 57 ~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~~~~~ 136 (359)
+||+++|.+|||||||++++..+... .++..|+.+.....+.+++. ..++.+|||||..+...
T Consensus 2 ~ki~vvG~~~vGKTsl~~~~~~~~f~--~~~~pt~~~~~~~~~~~~~~---------------~~~l~i~Dt~G~~~~~~ 64 (175)
T cd01874 2 IKCVVVGDGAVGKTCLLISYTTNKFP--SEYVPTVFDNYAVTVMIGGE---------------PYTLGLFDTAGQEDYDR 64 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCC--CCCCCceeeeeEEEEEECCE---------------EEEEEEEECCCccchhh
Confidence 58999999999999999999954431 23333332222222333321 25689999999965432
Q ss_pred cCcchhhhHhhHHHhcccceEEeecCC--------------------CccEEEeCCcccCCcchHHHHhhhhhc-----c
Q 018241 137 QGEGLGNKFLSHIREVDSILQVVRCFE--------------------DNDIVHVNGKVDPKSDVDVINLELVFS-----D 191 (359)
Q Consensus 137 ~~~~~~~~~l~~i~~aD~il~Vvd~~~--------------------~~~v~~v~nk~d~~~~~~~i~~el~~~-----d 191 (359)
.....++++|++++|+|.++ +.|++.+.||.|...+.+.+ +.+... .
T Consensus 65 -------~~~~~~~~a~~~ilv~d~~~~~s~~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~~~~~~-~~l~~~~~~~v~ 136 (175)
T cd01874 65 -------LRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTI-EKLAKNKQKPIT 136 (175)
T ss_pred -------hhhhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhhChhhH-HHhhhccCCCcC
Confidence 12235678999999999866 23678899999965442221 111111 1
Q ss_pred HHHHHHHHHHHhhhccccccchhhHHHHHHHHHHHHH
Q 018241 192 LDQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQ 228 (359)
Q Consensus 192 ~~~l~~~~~~~~~~~~~~~~Sa~~~~~~~~ll~~i~~ 228 (359)
.+..++...... ......+||+++.|+.++++.+..
T Consensus 137 ~~~~~~~a~~~~-~~~~~e~SA~tg~~v~~~f~~~~~ 172 (175)
T cd01874 137 PETGEKLARDLK-AVKYVECSALTQKGLKNVFDEAIL 172 (175)
T ss_pred HHHHHHHHHHhC-CcEEEEecCCCCCCHHHHHHHHHH
Confidence 111111111111 111156789999999999887765
No 154
>PLN03110 Rab GTPase; Provisional
Probab=99.36 E-value=2.9e-12 Score=116.20 Aligned_cols=145 Identities=16% Similarity=0.101 Sum_probs=92.3
Q ss_pred CCcEEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCCcCC
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~~~ 134 (359)
..+||+++|.+|||||||+++|++.... ....|....+.....+.+++. ...+.+|||||....
T Consensus 11 ~~~Ki~ivG~~~vGKStLi~~l~~~~~~-~~~~~t~g~~~~~~~v~~~~~---------------~~~l~l~Dt~G~~~~ 74 (216)
T PLN03110 11 YLFKIVLIGDSGVGKSNILSRFTRNEFC-LESKSTIGVEFATRTLQVEGK---------------TVKAQIWDTAGQERY 74 (216)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCC-CCCCCceeEEEEEEEEEECCE---------------EEEEEEEECCCcHHH
Confidence 3479999999999999999999954432 223333333333444544431 246899999997543
Q ss_pred CCcCcchhhhHhhHHHhcccceEEeecCC--------------------CccEEEeCCcccCCcchHHHHhhhhhccHHH
Q 018241 135 ASQGEGLGNKFLSHIREVDSILQVVRCFE--------------------DNDIVHVNGKVDPKSDVDVINLELVFSDLDQ 194 (359)
Q Consensus 135 ~~~~~~~~~~~l~~i~~aD~il~Vvd~~~--------------------~~~v~~v~nk~d~~~~~~~i~~el~~~d~~~ 194 (359)
.. .....++.+|++++|+|.++ +.+++.+.||+|....... ..+ .
T Consensus 75 ~~-------~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~-~~~-------~ 139 (216)
T PLN03110 75 RA-------ITSAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGNKSDLNHLRSV-AEE-------D 139 (216)
T ss_pred HH-------HHHHHhCCCCEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEEChhcccccCC-CHH-------H
Confidence 22 34556789999999999865 2357888999996432211 110 0
Q ss_pred HHHHHHHHhhhccccccchhhHHHHHHHHHHHHHHhcC
Q 018241 195 IEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMD 232 (359)
Q Consensus 195 l~~~~~~~~~~~~~~~~Sa~~~~~~~~ll~~i~~~L~~ 232 (359)
.. .+..... .....+||+.+.++.++++.+.+.+.+
T Consensus 140 ~~-~l~~~~~-~~~~e~SA~~g~~v~~lf~~l~~~i~~ 175 (216)
T PLN03110 140 GQ-ALAEKEG-LSFLETSALEATNVEKAFQTILLEIYH 175 (216)
T ss_pred HH-HHHHHcC-CEEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 11 1111111 112467899999999999988877743
No 155
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.36 E-value=1.3e-12 Score=110.53 Aligned_cols=135 Identities=19% Similarity=0.220 Sum_probs=82.8
Q ss_pred EEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCCcCCCCc
Q 018241 58 RAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGASQ 137 (359)
Q Consensus 58 ~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~~~~~~ 137 (359)
.|+|+|.+|||||||+|+|++.... ....| |.......+..+ ...+.+|||||......
T Consensus 1 ~i~i~G~~~~GKssl~~~l~~~~~~-~~~~~--t~~~~~~~~~~~-----------------~~~~~~~D~~g~~~~~~- 59 (159)
T cd04159 1 EITLVGLQNSGKTTLVNVIAGGQFS-EDTIP--TVGFNMRKVTKG-----------------NVTLKVWDLGGQPRFRS- 59 (159)
T ss_pred CEEEEcCCCCCHHHHHHHHccCCCC-cCccC--CCCcceEEEEEC-----------------CEEEEEEECCCCHhHHH-
Confidence 3899999999999999999965432 22222 222222333332 35699999999753322
Q ss_pred CcchhhhHhhHHHhcccceEEeecCCC---------------------ccEEEeCCcccCCcchH--HHHhhhhhccHHH
Q 018241 138 GEGLGNKFLSHIREVDSILQVVRCFED---------------------NDIVHVNGKVDPKSDVD--VINLELVFSDLDQ 194 (359)
Q Consensus 138 ~~~~~~~~l~~i~~aD~il~Vvd~~~~---------------------~~v~~v~nk~d~~~~~~--~i~~el~~~d~~~ 194 (359)
.....++.+|++++|+|+++. .+++.+.||.|...... .+..++.+...
T Consensus 60 ------~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~-- 131 (159)
T cd04159 60 ------MWERYCRGVNAIVYVVDAADRTALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLPGALSVDELIEQMNLKSI-- 131 (159)
T ss_pred ------HHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCcCHHHHHHHhCcccc--
Confidence 344567889999999998752 25778899999654321 11111100000
Q ss_pred HHHHHHHHhhhccccccchhhHHHHHHHHHHHHH
Q 018241 195 IEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQ 228 (359)
Q Consensus 195 l~~~~~~~~~~~~~~~~Sa~~~~~~~~ll~~i~~ 228 (359)
.........+|++++.++.++++.+.+
T Consensus 132 -------~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 158 (159)
T cd04159 132 -------TDREVSCYSISCKEKTNIDIVLDWLIK 158 (159)
T ss_pred -------cCCceEEEEEEeccCCChHHHHHHHhh
Confidence 000011146788999898888887754
No 156
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=99.36 E-value=1.2e-12 Score=130.41 Aligned_cols=100 Identities=19% Similarity=0.179 Sum_probs=73.9
Q ss_pred CCcEEEEEecCCCChhHHHHHHHhccccccC------------------------------CCCceeccceeEEEEeCCC
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAA------------------------------NFPFCTIEPNVGIVAVPDP 104 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~~~~~~~~~------------------------------~~p~tT~~~~~g~~~~~~~ 104 (359)
..++|+++|++|+|||||+|+|+....+... -.+|+|++.....+...
T Consensus 5 ~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~~-- 82 (425)
T PRK12317 5 PHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFETD-- 82 (425)
T ss_pred CEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEecC--
Confidence 4579999999999999999999954332211 15778877777666544
Q ss_pred ccchhccccccccccCceEEEEecCCCcCCCCcCcchhhhHhhHHHhcccceEEeecCC--C-----------------c
Q 018241 105 RLHVLSGLSKSQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFE--D-----------------N 165 (359)
Q Consensus 105 r~~~l~~~~~~~~~~~~~i~lvDtpG~~~~~~~~~~~~~~~l~~i~~aD~il~Vvd~~~--~-----------------~ 165 (359)
+.++.||||||..++.. .....++.+|++++|+|+.+ . .
T Consensus 83 ---------------~~~i~liDtpG~~~~~~-------~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~~~~ 140 (425)
T PRK12317 83 ---------------KYYFTIVDCPGHRDFVK-------NMITGASQADAAVLVVAADDAGGVMPQTREHVFLARTLGIN 140 (425)
T ss_pred ---------------CeEEEEEECCCcccchh-------hHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHcCCC
Confidence 46799999999754332 34455688999999999986 2 1
Q ss_pred cEEEeCCcccCCc
Q 018241 166 DIVHVNGKVDPKS 178 (359)
Q Consensus 166 ~v~~v~nk~d~~~ 178 (359)
+++.+.||+|...
T Consensus 141 ~iivviNK~Dl~~ 153 (425)
T PRK12317 141 QLIVAINKMDAVN 153 (425)
T ss_pred eEEEEEEcccccc
Confidence 3677999999764
No 157
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.35 E-value=5.7e-12 Score=108.64 Aligned_cols=140 Identities=18% Similarity=0.198 Sum_probs=85.8
Q ss_pred EEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCCcCCCCc
Q 018241 58 RAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGASQ 137 (359)
Q Consensus 58 ~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~~~~~~ 137 (359)
+|+++|.+|||||||++++.++.. ...++.++.......+.+.+. ..++.+|||||......
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~---------------~~~~~i~D~~g~~~~~~- 62 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKRF--IGEYDPNLESLYSRQVTIDGE---------------QVSLEILDTAGQQQADT- 62 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCcc--ccccCCChHHhceEEEEECCE---------------EEEEEEEECCCCccccc-
Confidence 589999999999999999984433 234444443222233333321 24688999999974211
Q ss_pred CcchhhhHhhHHHhcccceEEeecCC----------------------CccEEEeCCcccCCcchHHHHhhhhhccHHHH
Q 018241 138 GEGLGNKFLSHIREVDSILQVVRCFE----------------------DNDIVHVNGKVDPKSDVDVINLELVFSDLDQI 195 (359)
Q Consensus 138 ~~~~~~~~l~~i~~aD~il~Vvd~~~----------------------~~~v~~v~nk~d~~~~~~~i~~el~~~d~~~l 195 (359)
......++.+|++++|+|+++ +.+++.+.||+|...+... . .+..
T Consensus 63 -----~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v-~-------~~~~ 129 (165)
T cd04146 63 -----EQLERSIRWADGFVLVYSITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLLHYRQV-S-------TEEG 129 (165)
T ss_pred -----chHHHHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchHHhCcc-C-------HHHH
Confidence 033456788999999999865 2357888899985422111 0 0111
Q ss_pred HHHHHHHhhhccccccchhhH-HHHHHHHHHHHHHh
Q 018241 196 EKRMEKLKKGKAKDSQSKLKE-DAEKAALEKIQQAL 230 (359)
Q Consensus 196 ~~~~~~~~~~~~~~~~Sa~~~-~~~~~ll~~i~~~L 230 (359)
.+...... .....+|++.+ .++.++++.+.+.+
T Consensus 130 ~~~~~~~~--~~~~e~Sa~~~~~~v~~~f~~l~~~~ 163 (165)
T cd04146 130 EKLASELG--CLFFEVSAAEDYDGVHSVFHELCREV 163 (165)
T ss_pred HHHHHHcC--CEEEEeCCCCCchhHHHHHHHHHHHH
Confidence 11111111 11146788887 58999998887765
No 158
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.35 E-value=5.5e-12 Score=108.91 Aligned_cols=147 Identities=17% Similarity=0.145 Sum_probs=84.7
Q ss_pred cEEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCCcCCCC
Q 018241 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGAS 136 (359)
Q Consensus 57 ~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~~~~~ 136 (359)
+||+++|.+|||||||+|+|++... .....| +..+.....+..++. ...+.+|||||..+...
T Consensus 1 iki~i~G~~~~GKSsli~~l~~~~~-~~~~~~-~~~~~~~~~~~~~~~---------------~~~l~~~D~~g~~~~~~ 63 (171)
T cd00157 1 IKIVVVGDGAVGKTCLLISYTTGKF-PTEYVP-TVFDNYSATVTVDGK---------------QVNLGLWDTAGQEEYDR 63 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCC-CCCCCC-ceeeeeEEEEEECCE---------------EEEEEEEeCCCcccccc
Confidence 5899999999999999999995543 222222 221222222222211 24689999999875432
Q ss_pred cCcchhhhHhhHHHhcccceEEeecCC--------------------CccEEEeCCcccCCcchHHHHh---hhhhccHH
Q 018241 137 QGEGLGNKFLSHIREVDSILQVVRCFE--------------------DNDIVHVNGKVDPKSDVDVINL---ELVFSDLD 193 (359)
Q Consensus 137 ~~~~~~~~~l~~i~~aD~il~Vvd~~~--------------------~~~v~~v~nk~d~~~~~~~i~~---el~~~d~~ 193 (359)
-....++.+|++++|+|+++ ..+++.+.||.|..+....... .......+
T Consensus 64 -------~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~v~~~ 136 (171)
T cd00157 64 -------LRPLSYPNTDVFLICFSVDSPSSFENVKTKWIPEIRHYCPNVPIILVGTKIDLRDDENTLKKLEKGKEPITPE 136 (171)
T ss_pred -------cchhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEccHHhhhchhhhhhcccCCCccCHH
Confidence 11123378999999999876 1458889999996644322110 00000111
Q ss_pred HHHHHHHHHhhhccccccchhhHHHHHHHHHHHHH
Q 018241 194 QIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQ 228 (359)
Q Consensus 194 ~l~~~~~~~~~~~~~~~~Sa~~~~~~~~ll~~i~~ 228 (359)
........... .....+|++.+.++.++++.+.+
T Consensus 137 ~~~~~~~~~~~-~~~~~~Sa~~~~gi~~l~~~i~~ 170 (171)
T cd00157 137 EGEKLAKEIGA-IGYMECSALTQEGVKEVFEEAIR 170 (171)
T ss_pred HHHHHHHHhCC-eEEEEeecCCCCCHHHHHHHHhh
Confidence 11111111111 11146788888888888887654
No 159
>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.35 E-value=5.3e-12 Score=109.50 Aligned_cols=143 Identities=20% Similarity=0.154 Sum_probs=96.6
Q ss_pred cEEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCCcCCCC
Q 018241 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGAS 136 (359)
Q Consensus 57 ~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~~~~~ 136 (359)
.|+.++|-.+||||||+++.. .....-...+-.-+|-..-.+.+.|. ...+++|||+|..++.+
T Consensus 23 ~KlVflGdqsVGKTslItRf~-yd~fd~~YqATIGiDFlskt~~l~d~---------------~vrLQlWDTAGQERFrs 86 (221)
T KOG0094|consen 23 YKLVFLGDQSVGKTSLITRFM-YDKFDNTYQATIGIDFLSKTMYLEDR---------------TVRLQLWDTAGQERFRS 86 (221)
T ss_pred EEEEEEccCccchHHHHHHHH-HhhhcccccceeeeEEEEEEEEEcCc---------------EEEEEEEecccHHHHhh
Confidence 699999999999999999999 44332111111111222222333332 36799999999987776
Q ss_pred cCcchhhhHhhHHHhcccceEEeecCCC---------------------ccEEEeCCcccCCcchHHHHhhhhhccHHHH
Q 018241 137 QGEGLGNKFLSHIREVDSILQVVRCFED---------------------NDIVHVNGKVDPKSDVDVINLELVFSDLDQI 195 (359)
Q Consensus 137 ~~~~~~~~~l~~i~~aD~il~Vvd~~~~---------------------~~v~~v~nk~d~~~~~~~i~~el~~~d~~~l 195 (359)
-.-+++|++++++.|.|..+. .-+.+|.||.|.....+....|=
T Consensus 87 -------lipsY~Rds~vaviVyDit~~~Sfe~t~kWi~dv~~e~gs~~viI~LVGnKtDL~dkrqvs~eEg-------- 151 (221)
T KOG0094|consen 87 -------LIPSYIRDSSVAVIVYDITDRNSFENTSKWIEDVRRERGSDDVIIFLVGNKTDLSDKRQVSIEEG-------- 151 (221)
T ss_pred -------hhhhhccCCeEEEEEEeccccchHHHHHHHHHHHHhccCCCceEEEEEcccccccchhhhhHHHH--------
Confidence 567889999999999998772 23567999999886554433321
Q ss_pred HHHHHHHhhhccccccchhhHHHHHHHHHHHHHHhcC
Q 018241 196 EKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMD 232 (359)
Q Consensus 196 ~~~~~~~~~~~~~~~~Sa~~~~~~~~ll~~i~~~L~~ 232 (359)
++.-..+.. .. ...||+.|.|+..++.+|.+.|++
T Consensus 152 ~~kAkel~a-~f-~etsak~g~NVk~lFrrIaa~l~~ 186 (221)
T KOG0094|consen 152 ERKAKELNA-EF-IETSAKAGENVKQLFRRIAAALPG 186 (221)
T ss_pred HHHHHHhCc-EE-EEecccCCCCHHHHHHHHHHhccC
Confidence 111111111 11 467899999999999999999974
No 160
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=99.35 E-value=4.7e-12 Score=130.20 Aligned_cols=147 Identities=20% Similarity=0.157 Sum_probs=96.7
Q ss_pred ccCCcEEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCCc
Q 018241 53 ISMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLV 132 (359)
Q Consensus 53 ~~~~~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~ 132 (359)
...+++|+++|++|+|||||+++|.+. .......++.|.+.....+.+++ ..++.||||||..
T Consensus 84 ~~r~p~V~I~Ghvd~GKTSLl~~l~~~-~v~~~e~~GIT~~ig~~~v~~~~----------------~~~i~~iDTPGhe 146 (587)
T TIGR00487 84 VERPPVVTIMGHVDHGKTSLLDSIRKT-KVAQGEAGGITQHIGAYHVENED----------------GKMITFLDTPGHE 146 (587)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHhC-CcccccCCceeecceEEEEEECC----------------CcEEEEEECCCCc
Confidence 345689999999999999999999954 44445667788665444444432 2269999999986
Q ss_pred CCCCcCcchhhhHhhHHHhcccceEEeecCC----------------CccEEEeCCcccCCc-chHHHHhhhhhccHHHH
Q 018241 133 KGASQGEGLGNKFLSHIREVDSILQVVRCFE----------------DNDIVHVNGKVDPKS-DVDVINLELVFSDLDQI 195 (359)
Q Consensus 133 ~~~~~~~~~~~~~l~~i~~aD~il~Vvd~~~----------------~~~v~~v~nk~d~~~-~~~~i~~el~~~d~~~l 195 (359)
++.. .....++.+|++++|+|+.+ +.+++.+.||+|... +.+.+..++...+. .
T Consensus 147 ~F~~-------~r~rga~~aDiaILVVda~dgv~~qT~e~i~~~~~~~vPiIVviNKiDl~~~~~e~v~~~L~~~g~--~ 217 (587)
T TIGR00487 147 AFTS-------MRARGAKVTDIVVLVVAADDGVMPQTIEAISHAKAANVPIIVAINKIDKPEANPDRVKQELSEYGL--V 217 (587)
T ss_pred chhh-------HHHhhhccCCEEEEEEECCCCCCHhHHHHHHHHHHcCCCEEEEEECcccccCCHHHHHHHHHHhhh--h
Confidence 5543 23345678999999999876 236889999999642 33333332211110 0
Q ss_pred HHHHHHHhhhccccccchhhHHHHHHHHHHHHH
Q 018241 196 EKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQ 228 (359)
Q Consensus 196 ~~~~~~~~~~~~~~~~Sa~~~~~~~~ll~~i~~ 228 (359)
...+.......++||+++.++.++++.+..
T Consensus 218 ---~~~~~~~~~~v~iSAktGeGI~eLl~~I~~ 247 (587)
T TIGR00487 218 ---PEDWGGDTIFVPVSALTGDGIDELLDMILL 247 (587)
T ss_pred ---HHhcCCCceEEEEECCCCCChHHHHHhhhh
Confidence 011111111257899999999999887753
No 161
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=99.34 E-value=6.2e-12 Score=109.20 Aligned_cols=146 Identities=19% Similarity=0.166 Sum_probs=85.1
Q ss_pred EEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCCcCCCCcC
Q 018241 59 AGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGASQG 138 (359)
Q Consensus 59 i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~~~~~~~ 138 (359)
|+|+|.+|||||||+++++++... . .+..++.+.....+.+++. ...+.+|||||......
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~---------------~~~~~i~Dt~G~~~~~~-- 61 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAFP-E-DYVPTVFENYSADVEVDGK---------------PVELGLWDTAGQEDYDR-- 61 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCCC-C-CCCCcEEeeeeEEEEECCE---------------EEEEEEEECCCCcccch--
Confidence 589999999999999999955432 1 1222222222222323221 24689999999854432
Q ss_pred cchhhhHhhHHHhcccceEEeecCC--------------------CccEEEeCCcccCCcchHHHHhhhhh-----ccHH
Q 018241 139 EGLGNKFLSHIREVDSILQVVRCFE--------------------DNDIVHVNGKVDPKSDVDVINLELVF-----SDLD 193 (359)
Q Consensus 139 ~~~~~~~l~~i~~aD~il~Vvd~~~--------------------~~~v~~v~nk~d~~~~~~~i~~el~~-----~d~~ 193 (359)
.....++.+|++++|+|+++ +.+++.+.||.|...+...... +.. ...+
T Consensus 62 -----~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~-~~~~~~~~v~~~ 135 (174)
T smart00174 62 -----LRPLSYPDTDVFLICFSVDSPASFENVKEKWYPEVKHFCPNTPIILVGTKLDLREDKSTLRE-LSKQKQEPVTYE 135 (174)
T ss_pred -----hchhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEecChhhhhChhhhhh-hhcccCCCccHH
Confidence 11234578999999999876 2368899999997653322111 110 0111
Q ss_pred HHHHHHHHHhhhccccccchhhHHHHHHHHHHHHHHh
Q 018241 194 QIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQAL 230 (359)
Q Consensus 194 ~l~~~~~~~~~~~~~~~~Sa~~~~~~~~ll~~i~~~L 230 (359)
......... .......+||+++.++.++++.+.+.+
T Consensus 136 ~~~~~~~~~-~~~~~~e~Sa~~~~~v~~lf~~l~~~~ 171 (174)
T smart00174 136 QGEALAKRI-GAVKYLECSALTQEGVREVFEEAIRAA 171 (174)
T ss_pred HHHHHHHHc-CCcEEEEecCCCCCCHHHHHHHHHHHh
Confidence 111111111 110114678999999999998887654
No 162
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=99.34 E-value=7.8e-12 Score=108.43 Aligned_cols=141 Identities=15% Similarity=0.094 Sum_probs=86.6
Q ss_pred cEEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCCcCCCC
Q 018241 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGAS 136 (359)
Q Consensus 57 ~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~~~~~ 136 (359)
.||+++|.+|||||||+++++.+.... .+. .|.........+.. +.....+.+|||||......
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~--~~~-~t~~~~~~~~~~~~-------------~~~~~~l~i~Dt~G~~~~~~ 64 (166)
T cd00877 1 FKLVLVGDGGTGKTTFVKRHLTGEFEK--KYV-ATLGVEVHPLDFHT-------------NRGKIRFNVWDTAGQEKFGG 64 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCC--CCC-CceeeEEEEEEEEE-------------CCEEEEEEEEECCCChhhcc
Confidence 489999999999999999998443221 111 22212222221110 00135689999999864432
Q ss_pred cCcchhhhHhhHHHhcccceEEeecCC-------------------CccEEEeCCcccCCcchHHHHhhhhhccHHHHHH
Q 018241 137 QGEGLGNKFLSHIREVDSILQVVRCFE-------------------DNDIVHVNGKVDPKSDVDVINLELVFSDLDQIEK 197 (359)
Q Consensus 137 ~~~~~~~~~l~~i~~aD~il~Vvd~~~-------------------~~~v~~v~nk~d~~~~~~~i~~el~~~d~~~l~~ 197 (359)
+. ...++.+|++++|+|+++ +.+++.+.||+|..... +.. . ..
T Consensus 65 ----~~---~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~piiiv~nK~Dl~~~~--~~~-------~--~~ 126 (166)
T cd00877 65 ----LR---DGYYIGGQCAIIMFDVTSRVTYKNVPNWHRDLVRVCGNIPIVLCGNKVDIKDRK--VKA-------K--QI 126 (166)
T ss_pred ----cc---HHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCcEEEEEEchhccccc--CCH-------H--HH
Confidence 11 234578999999999987 25678899999965211 111 0 01
Q ss_pred HHHHHhhhccccccchhhHHHHHHHHHHHHHHhcC
Q 018241 198 RMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMD 232 (359)
Q Consensus 198 ~~~~~~~~~~~~~~Sa~~~~~~~~ll~~i~~~L~~ 232 (359)
.+... .......+||+.+.++.++++.+.+.+.+
T Consensus 127 ~~~~~-~~~~~~e~Sa~~~~~v~~~f~~l~~~~~~ 160 (166)
T cd00877 127 TFHRK-KNLQYYEISAKSNYNFEKPFLWLARKLLG 160 (166)
T ss_pred HHHHH-cCCEEEEEeCCCCCChHHHHHHHHHHHHh
Confidence 11111 11112578999999999999999888754
No 163
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.34 E-value=7e-12 Score=108.98 Aligned_cols=147 Identities=18% Similarity=0.116 Sum_probs=86.2
Q ss_pred cEEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCCcCCCC
Q 018241 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGAS 136 (359)
Q Consensus 57 ~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~~~~~ 136 (359)
.||+++|.+|||||||++++.++.... .+..++.+.....+.+.+. ..++.+|||||......
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~~~~~~--~~~~t~~~~~~~~~~~~~~---------------~~~l~i~Dt~G~~~~~~ 64 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSKDQFPE--VYVPTVFENYVADIEVDGK---------------QVELALWDTAGQEDYDR 64 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCCC--CCCCccccceEEEEEECCE---------------EEEEEEEeCCCchhhhh
Confidence 589999999999999999999544321 2222332222334444321 24689999999854322
Q ss_pred cCcchhhhHhhHHHhcccceEEeecCC--------------------CccEEEeCCcccCCcchHHHHhhhhh-c----c
Q 018241 137 QGEGLGNKFLSHIREVDSILQVVRCFE--------------------DNDIVHVNGKVDPKSDVDVINLELVF-S----D 191 (359)
Q Consensus 137 ~~~~~~~~~l~~i~~aD~il~Vvd~~~--------------------~~~v~~v~nk~d~~~~~~~i~~el~~-~----d 191 (359)
. ....++++|++++|+|..+ +.+++.+.||.|....... ..++.. . .
T Consensus 65 ~-------~~~~~~~~d~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~-~~~i~~~~~~~v~ 136 (175)
T cd01870 65 L-------RPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHT-RRELAKMKQEPVK 136 (175)
T ss_pred c-------cccccCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhcccChhh-hhhhhhccCCCcc
Confidence 1 1124578999999998763 2367889999996543221 111110 0 0
Q ss_pred HHHHHHHHHHHhhhccccccchhhHHHHHHHHHHHHHH
Q 018241 192 LDQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQA 229 (359)
Q Consensus 192 ~~~l~~~~~~~~~~~~~~~~Sa~~~~~~~~ll~~i~~~ 229 (359)
.....+ +..-........+||+.+.++.++++.+.+.
T Consensus 137 ~~~~~~-~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~ 173 (175)
T cd01870 137 PEEGRD-MANKIGAFGYMECSAKTKEGVREVFEMATRA 173 (175)
T ss_pred HHHHHH-HHHHcCCcEEEEeccccCcCHHHHHHHHHHH
Confidence 111111 1110011111467899999999999888754
No 164
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.34 E-value=4.2e-12 Score=111.08 Aligned_cols=142 Identities=18% Similarity=0.116 Sum_probs=88.4
Q ss_pred cEEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCCcCCCC
Q 018241 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGAS 136 (359)
Q Consensus 57 ~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~~~~~ 136 (359)
.+|+++|.||||||||++++++... . ..++.++.+.....+.+... ...+.+|||||..+...
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~~-~-~~~~~t~~~~~~~~~~~~~~---------------~~~~~l~D~~g~~~~~~ 64 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGHF-V-ESYYPTIENTFSKIIRYKGQ---------------DYHLEIVDTAGQDEYSI 64 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCC-c-cccCcchhhhEEEEEEECCE---------------EEEEEEEECCChHhhHH
Confidence 5899999999999999999995432 2 22333443333333433321 24578999999854332
Q ss_pred cCcchhhhHhhHHHhcccceEEeecCCC---------------------ccEEEeCCcccCCcchHHHHhhhhhccHHHH
Q 018241 137 QGEGLGNKFLSHIREVDSILQVVRCFED---------------------NDIVHVNGKVDPKSDVDVINLELVFSDLDQI 195 (359)
Q Consensus 137 ~~~~~~~~~l~~i~~aD~il~Vvd~~~~---------------------~~v~~v~nk~d~~~~~~~i~~el~~~d~~~l 195 (359)
........+|++++|+|+++. .+++.+.||+|...+... . .+..
T Consensus 65 -------~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~-----~---~~~~ 129 (180)
T cd04137 65 -------LPQKYSIGIHGYILVYSVTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLHTQRQV-----S---TEEG 129 (180)
T ss_pred -------HHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhhhhcCcc-----C---HHHH
Confidence 223455789999999998762 367899999996532111 0 0111
Q ss_pred HHHHHHHhhhccccccchhhHHHHHHHHHHHHHHhcC
Q 018241 196 EKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMD 232 (359)
Q Consensus 196 ~~~~~~~~~~~~~~~~Sa~~~~~~~~ll~~i~~~L~~ 232 (359)
........ .....+||+.+.++.++++.+.+.+..
T Consensus 130 ~~~~~~~~--~~~~~~Sa~~~~gv~~l~~~l~~~~~~ 164 (180)
T cd04137 130 KELAESWG--AAFLESSARENENVEEAFELLIEEIEK 164 (180)
T ss_pred HHHHHHcC--CeEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 11111111 111467899999999999888877743
No 165
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=99.34 E-value=2e-12 Score=113.17 Aligned_cols=59 Identities=31% Similarity=0.472 Sum_probs=49.5
Q ss_pred ccCCcEEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCC
Q 018241 53 ISMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGL 131 (359)
Q Consensus 53 ~~~~~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~ 131 (359)
....++|+++|.||||||||+|+|+|...+.+++.||+|++...... +.++.++||||+
T Consensus 114 ~~~~~~~~~vG~pnvGKSslin~l~~~~~~~~~~~pg~T~~~~~~~~--------------------~~~~~l~DtPGi 172 (172)
T cd04178 114 IKTSITVGVVGFPNVGKSSLINSLKRSRACNVGATPGVTKSMQEVHL--------------------DKKVKLLDSPGI 172 (172)
T ss_pred cccCcEEEEEcCCCCCHHHHHHHHhCcccceecCCCCeEcceEEEEe--------------------CCCEEEEECcCC
Confidence 34558999999999999999999998888899999999986554432 235999999996
No 166
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.33 E-value=4.5e-12 Score=108.29 Aligned_cols=147 Identities=20% Similarity=0.206 Sum_probs=84.9
Q ss_pred EEEEEecCCCChhHHHHHHHh-ccccccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCCcCCCC
Q 018241 58 RAGIVGLPNVGKSTLFNAVVE-NGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGAS 136 (359)
Q Consensus 58 ~i~ivG~pn~GKSTL~n~L~~-~~~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~~~~~ 136 (359)
.|+++|.+|||||||+|.|++ ......++.+++|...... .. ...+.++||||+.....
T Consensus 1 ~i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~--~~------------------~~~~~~~D~~g~~~~~~ 60 (170)
T cd01876 1 EIAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFF--NV------------------NDKFRLVDLPGYGYAKV 60 (170)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEE--Ec------------------cCeEEEecCCCcccccc
Confidence 489999999999999999994 4445566777777544322 11 12699999999854321
Q ss_pred c---C---cchhhhHhhHHHhcccceEEeecCCC----------------ccEEEeCCcccCCcchHHHHhhhhhccHHH
Q 018241 137 Q---G---EGLGNKFLSHIREVDSILQVVRCFED----------------NDIVHVNGKVDPKSDVDVINLELVFSDLDQ 194 (359)
Q Consensus 137 ~---~---~~~~~~~l~~i~~aD~il~Vvd~~~~----------------~~v~~v~nk~d~~~~~~~i~~el~~~d~~~ 194 (359)
. . ..+...++..-.+++++++|+|.... .+++.+.||+|....-..... ...
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~l~~~~~~vi~v~nK~D~~~~~~~~~~------~~~ 134 (170)
T cd01876 61 SKEVKEKWGKLIEEYLENRENLKGVVLLIDSRHGPTEIDLEMLDWLEELGIPFLVVLTKADKLKKSELAKA------LKE 134 (170)
T ss_pred CHHHHHHHHHHHHHHHHhChhhhEEEEEEEcCcCCCHhHHHHHHHHHHcCCCEEEEEEchhcCChHHHHHH------HHH
Confidence 1 0 11122333333456888999988653 246778888886532211000 011
Q ss_pred HHHHHHHHhhhccccccchhhHHHHHHHHHHHHHHh
Q 018241 195 IEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQAL 230 (359)
Q Consensus 195 l~~~~~~~~~~~~~~~~Sa~~~~~~~~ll~~i~~~L 230 (359)
+...+..........++|++++.++.++++.+.+++
T Consensus 135 ~~~~l~~~~~~~~~~~~Sa~~~~~~~~l~~~l~~~~ 170 (170)
T cd01876 135 IKKELKLFEIDPPIILFSSLKGQGIDELRALIEKWL 170 (170)
T ss_pred HHHHHHhccCCCceEEEecCCCCCHHHHHHHHHHhC
Confidence 111111000111113678888888888888776653
No 167
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=99.33 E-value=8e-12 Score=109.12 Aligned_cols=141 Identities=14% Similarity=0.115 Sum_probs=88.0
Q ss_pred cEEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCCcCCCC
Q 018241 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGAS 136 (359)
Q Consensus 57 ~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~~~~~ 136 (359)
.+|+++|.+|||||||++++.++.... .+..|+.+.....+.+++. ...+.+|||||......
T Consensus 3 ~ki~vvG~~~vGKTsL~~~~~~~~f~~--~~~~t~~~~~~~~~~~~~~---------------~~~l~i~Dt~G~~~~~~ 65 (172)
T cd04141 3 YKIVMLGAGGVGKSAVTMQFISHSFPD--YHDPTIEDAYKQQARIDNE---------------PALLDILDTAGQAEFTA 65 (172)
T ss_pred eEEEEECCCCCcHHHHHHHHHhCCCCC--CcCCcccceEEEEEEECCE---------------EEEEEEEeCCCchhhHH
Confidence 689999999999999999998554321 2222221112222333321 24689999999865433
Q ss_pred cCcchhhhHhhHHHhcccceEEeecCCC---------------------ccEEEeCCcccCCcchHHHHhhhhhccHHHH
Q 018241 137 QGEGLGNKFLSHIREVDSILQVVRCFED---------------------NDIVHVNGKVDPKSDVDVINLELVFSDLDQI 195 (359)
Q Consensus 137 ~~~~~~~~~l~~i~~aD~il~Vvd~~~~---------------------~~v~~v~nk~d~~~~~~~i~~el~~~d~~~l 195 (359)
.....++.+|++++|+|.++. .+++.+.||+|...+.. +..+ ..
T Consensus 66 -------l~~~~~~~~d~~ilv~d~~~~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~Dl~~~~~-v~~~-------~~ 130 (172)
T cd04141 66 -------MRDQYMRCGEGFIICYSVTDRHSFQEASEFKKLITRVRLTEDIPLVLVGNKVDLESQRQ-VTTE-------EG 130 (172)
T ss_pred -------HhHHHhhcCCEEEEEEECCchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhhhhcCc-cCHH-------HH
Confidence 334556889999999998762 36788999999653321 1111 11
Q ss_pred HHHHHHHhhhccccccchhhHHHHHHHHHHHHHHhc
Q 018241 196 EKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALM 231 (359)
Q Consensus 196 ~~~~~~~~~~~~~~~~Sa~~~~~~~~ll~~i~~~L~ 231 (359)
........ .....+||+.+.++.++++.+...+-
T Consensus 131 ~~~a~~~~--~~~~e~Sa~~~~~v~~~f~~l~~~~~ 164 (172)
T cd04141 131 RNLAREFN--CPFFETSAALRHYIDDAFHGLVREIR 164 (172)
T ss_pred HHHHHHhC--CEEEEEecCCCCCHHHHHHHHHHHHH
Confidence 11111111 11146799999999999988887664
No 168
>PLN03108 Rab family protein; Provisional
Probab=99.33 E-value=6.9e-12 Score=113.19 Aligned_cols=142 Identities=18% Similarity=0.109 Sum_probs=88.1
Q ss_pred CcEEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCCcCCC
Q 018241 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA 135 (359)
Q Consensus 56 ~~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~~~~ 135 (359)
.+||+|+|.+|||||||+|++++..... ...|..+.+...+.+.+++. ...+.+|||||.....
T Consensus 6 ~~kivivG~~gvGKStLi~~l~~~~~~~-~~~~ti~~~~~~~~i~~~~~---------------~i~l~l~Dt~G~~~~~ 69 (210)
T PLN03108 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQP-VHDLTIGVEFGARMITIDNK---------------PIKLQIWDTAGQESFR 69 (210)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCC-CCCCCccceEEEEEEEECCE---------------EEEEEEEeCCCcHHHH
Confidence 4799999999999999999999554432 22232232333344544432 2358899999975432
Q ss_pred CcCcchhhhHhhHHHhcccceEEeecCCC--------------------ccEEEeCCcccCCcchHHHHhhhhhccHHHH
Q 018241 136 SQGEGLGNKFLSHIREVDSILQVVRCFED--------------------NDIVHVNGKVDPKSDVDVINLELVFSDLDQI 195 (359)
Q Consensus 136 ~~~~~~~~~~l~~i~~aD~il~Vvd~~~~--------------------~~v~~v~nk~d~~~~~~~i~~el~~~d~~~l 195 (359)
. .....++.+|++++|+|+++. .+++.+.||.|....... . .+..
T Consensus 70 ~-------~~~~~~~~ad~~vlv~D~~~~~s~~~l~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~-~-------~~~~ 134 (210)
T PLN03108 70 S-------ITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAV-S-------TEEG 134 (210)
T ss_pred H-------HHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccccCC-C-------HHHH
Confidence 2 344566889999999998762 357788899986532111 0 0111
Q ss_pred HHHHHHHhhhccccccchhhHHHHHHHHHHHHHHh
Q 018241 196 EKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQAL 230 (359)
Q Consensus 196 ~~~~~~~~~~~~~~~~Sa~~~~~~~~ll~~i~~~L 230 (359)
++..... . .....+||+++.++.++++.+.+.+
T Consensus 135 ~~~~~~~-~-~~~~e~Sa~~~~~v~e~f~~l~~~~ 167 (210)
T PLN03108 135 EQFAKEH-G-LIFMEASAKTAQNVEEAFIKTAAKI 167 (210)
T ss_pred HHHHHHc-C-CEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 1111111 1 1114678899889988887776665
No 169
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=99.32 E-value=1e-11 Score=108.67 Aligned_cols=148 Identities=18% Similarity=0.135 Sum_probs=85.6
Q ss_pred cEEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCCcCCCC
Q 018241 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGAS 136 (359)
Q Consensus 57 ~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~~~~~ 136 (359)
+||+++|.+|||||||+.++..+... ..+..++.+...-.+.+.+. ..++.+|||||......
T Consensus 2 ~ki~iiG~~~vGKSsli~~~~~~~f~--~~~~~t~~~~~~~~~~~~~~---------------~~~l~i~Dt~G~~~~~~ 64 (174)
T cd01871 2 IKCVVVGDGAVGKTCLLISYTTNAFP--GEYIPTVFDNYSANVMVDGK---------------PVNLGLWDTAGQEDYDR 64 (174)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCC--CcCCCcceeeeEEEEEECCE---------------EEEEEEEECCCchhhhh
Confidence 58999999999999999999954332 12222221111111222211 24688999999854432
Q ss_pred cCcchhhhHhhHHHhcccceEEeecCCC--------------------ccEEEeCCcccCCcchHHHHhhhh----hccH
Q 018241 137 QGEGLGNKFLSHIREVDSILQVVRCFED--------------------NDIVHVNGKVDPKSDVDVINLELV----FSDL 192 (359)
Q Consensus 137 ~~~~~~~~~l~~i~~aD~il~Vvd~~~~--------------------~~v~~v~nk~d~~~~~~~i~~el~----~~d~ 192 (359)
.....++++|++++|+|+++. .+++.+.||+|...+...++.... .-..
T Consensus 65 -------~~~~~~~~~d~~ilv~d~~~~~sf~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~ 137 (174)
T cd01871 65 -------LRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITY 137 (174)
T ss_pred -------hhhhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhccChhhHHHHhhccCCCCCH
Confidence 122356789999999998762 367889999996543221111000 0111
Q ss_pred HHHHHHHHHHhhhccccccchhhHHHHHHHHHHHHHH
Q 018241 193 DQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQA 229 (359)
Q Consensus 193 ~~l~~~~~~~~~~~~~~~~Sa~~~~~~~~ll~~i~~~ 229 (359)
+........+.. .....+||+++.++.++++.+.+.
T Consensus 138 ~~~~~~~~~~~~-~~~~e~Sa~~~~~i~~~f~~l~~~ 173 (174)
T cd01871 138 PQGLAMAKEIGA-VKYLECSALTQKGLKTVFDEAIRA 173 (174)
T ss_pred HHHHHHHHHcCC-cEEEEecccccCCHHHHHHHHHHh
Confidence 111111111111 011467999999999998887653
No 170
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.32 E-value=4.5e-12 Score=106.53 Aligned_cols=126 Identities=17% Similarity=0.163 Sum_probs=75.5
Q ss_pred EEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCCcCCCCc
Q 018241 58 RAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGASQ 137 (359)
Q Consensus 58 ~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~~~~~~ 137 (359)
||+++|.||||||||+|++++.... ++ .| . .+.+. ..+|||||.....
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~~----~~-~t----~-~~~~~--------------------~~~iDt~G~~~~~-- 49 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEIL----YK-KT----Q-AVEYN--------------------DGAIDTPGEYVEN-- 49 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCccc----cc-cc----e-eEEEc--------------------CeeecCchhhhhh--
Confidence 7999999999999999999955321 11 11 1 12221 2689999983111
Q ss_pred CcchhhhHhhHHHhcccceEEeecCCCc-------------cEEEeCCcccCCcchHHHHhhhhhccHHHHHHHHHHHhh
Q 018241 138 GEGLGNKFLSHIREVDSILQVVRCFEDN-------------DIVHVNGKVDPKSDVDVINLELVFSDLDQIEKRMEKLKK 204 (359)
Q Consensus 138 ~~~~~~~~l~~i~~aD~il~Vvd~~~~~-------------~v~~v~nk~d~~~~~~~i~~el~~~d~~~l~~~~~~~~~ 204 (359)
..........+++||++++|+|+++.. +++.+.||+|..+.... .+..++......
T Consensus 50 -~~~~~~~~~~~~~ad~vilv~d~~~~~s~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~---------~~~~~~~~~~~~- 118 (142)
T TIGR02528 50 -RRLYSALIVTAADADVIALVQSATDPESRFPPGFASIFVKPVIGLVTKIDLAEADVD---------IERAKELLETAG- 118 (142)
T ss_pred -HHHHHHHHHHhhcCCEEEEEecCCCCCcCCChhHHHhccCCeEEEEEeeccCCcccC---------HHHHHHHHHHcC-
Confidence 111222334578999999999987632 46778899996532110 111111111111
Q ss_pred hccccccchhhHHHHHHHHHHH
Q 018241 205 GKAKDSQSKLKEDAEKAALEKI 226 (359)
Q Consensus 205 ~~~~~~~Sa~~~~~~~~ll~~i 226 (359)
......+||+.+.++.++++.+
T Consensus 119 ~~~~~~~Sa~~~~gi~~l~~~l 140 (142)
T TIGR02528 119 AEPIFEISSVDEQGLEALVDYL 140 (142)
T ss_pred CCcEEEEecCCCCCHHHHHHHH
Confidence 1111467899998888887765
No 171
>PRK13351 elongation factor G; Reviewed
Probab=99.32 E-value=5.9e-12 Score=132.68 Aligned_cols=228 Identities=16% Similarity=0.110 Sum_probs=118.3
Q ss_pred CcEEEEEecCCCChhHHHHHHHhccccc--cCC---------------CCceeccceeEEEEeCCCccchhccccccccc
Q 018241 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQ--AAN---------------FPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKA 118 (359)
Q Consensus 56 ~~~i~ivG~pn~GKSTL~n~L~~~~~~~--~~~---------------~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~ 118 (359)
..+|+|+|+.|+|||||+++|+...... .+. .-+.|+......+.+
T Consensus 8 irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~----------------- 70 (687)
T PRK13351 8 IRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDW----------------- 70 (687)
T ss_pred ccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEE-----------------
Confidence 3699999999999999999998432110 000 011222222222222
Q ss_pred cCceEEEEecCCCcCCCCcCcchhhhHhhHHHhcccceEEeecCCCccEEEeCCcccCCcchHHHHhhhhhccHHHHHHH
Q 018241 119 VPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPKSDVDVINLELVFSDLDQIEKR 198 (359)
Q Consensus 119 ~~~~i~lvDtpG~~~~~~~~~~~~~~~l~~i~~aD~il~Vvd~~~~~~v~~v~nk~d~~~~~~~i~~el~~~d~~~l~~~ 198 (359)
...++.||||||..++.. .....++.+|++++|+|+.+.. ... . .. .+..+.....+
T Consensus 71 ~~~~i~liDtPG~~df~~-------~~~~~l~~aD~~ilVvd~~~~~------------~~~-~-~~--~~~~~~~~~~p 127 (687)
T PRK13351 71 DNHRINLIDTPGHIDFTG-------EVERSLRVLDGAVVVFDAVTGV------------QPQ-T-ET--VWRQADRYGIP 127 (687)
T ss_pred CCEEEEEEECCCcHHHHH-------HHHHHHHhCCEEEEEEeCCCCC------------CHH-H-HH--HHHHHHhcCCC
Confidence 256899999999975443 5667789999999999985431 100 0 00 00000000000
Q ss_pred HHHHhhhccccccchhhHHHHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHH-HHhhhhcCCeEEEE-----eCCCcccC
Q 018241 199 MEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMDGKPARSVTLNDFERDSIK-QLCLLTMKPIIYVA-----NVAESDLA 272 (359)
Q Consensus 199 ~~~~~~~~~~~~~Sa~~~~~~~~ll~~i~~~L~~~~~~~~~~~t~~~~e~i~-~~~~l~~kp~~y~~-----nv~~~~~~ 272 (359)
.-.+.++.+ +.+......++.+.+.|... ..+.+++......++ -+++...+...|.- +....+.+
T Consensus 128 ~iiviNK~D------~~~~~~~~~~~~i~~~l~~~--~~~~~~P~~~~~~~~g~id~~~~~~~~~~~~~~~~~~~~~~~~ 199 (687)
T PRK13351 128 RLIFINKMD------RVGADLFKVLEDIEERFGKR--PLPLQLPIGSEDGFEGVVDLITEPELHFSEGDGGSTVEEGPIP 199 (687)
T ss_pred EEEEEECCC------CCCCCHHHHHHHHHHHHCCC--eEEEEeccccCCceEEEEECccceEEecccCCCCCceEEccCC
Confidence 000111111 12223456666666666332 111122211111112 11222222222210 00011111
Q ss_pred CCCCChhHHHHHHHHHhcCCeEEEeeHHHHHHHcCCCHHHHHHHHHHcCCCCchHHHHHHHHHHhcCCeEEecC
Q 018241 273 DPGSNPHVNEVMNLASDLQSGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTS 346 (359)
Q Consensus 273 ~~~~~~~~~~i~~~~~~~~~~~i~~sa~le~~l~~l~~~~~~~~l~~~~~~~~~l~~li~~~~~~L~li~ffT~ 346 (359)
..+.+.+.++..+ +-+.+++.|++..++||++..++...+...++.++..-.+.|+|..
T Consensus 200 ----~~~~~~~~~~~~~-----------l~e~~~~~d~~lle~~l~~~~l~~~~l~~~~~~~~~~~~~~PV~~g 258 (687)
T PRK13351 200 ----EELLEEVEEAREK-----------LIEALAEFDDELLELYLEGEELSAEQLRAPLREGTRSGHLVPVLFG 258 (687)
T ss_pred ----HHHHHHHHHHHHH-----------HHHHHHhcCHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCEEEEEec
Confidence 3344455554432 5566788888899999998778877888888888777778888853
No 172
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.32 E-value=6e-12 Score=113.03 Aligned_cols=99 Identities=22% Similarity=0.175 Sum_probs=65.8
Q ss_pred ceEEEEecCCCcCCCCcCcchhhhHhhHHHhcccceEEeecCCC------------------ccEEEeCCcccCCcchHH
Q 018241 121 ASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFED------------------NDIVHVNGKVDPKSDVDV 182 (359)
Q Consensus 121 ~~i~lvDtpG~~~~~~~~~~~~~~~l~~i~~aD~il~Vvd~~~~------------------~~v~~v~nk~d~~~~~~~ 182 (359)
.++.||||||.. .+...++..++.+|++++|+|+.+. .+++.+.||+|...+...
T Consensus 83 ~~i~~iDtPG~~-------~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~~~~~~iiivvNK~Dl~~~~~~ 155 (203)
T cd01888 83 RHVSFVDCPGHE-------ILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEIMGLKHIIIVQNKIDLVKEEQA 155 (203)
T ss_pred cEEEEEECCChH-------HHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHHcCCCcEEEEEEchhccCHHHH
Confidence 679999999963 2445778888999999999999762 136779999997643211
Q ss_pred HHhhhhhccHHHHHHHHHHHhh-hccccccchhhHHHHHHHHHHHHHHhcC
Q 018241 183 INLELVFSDLDQIEKRMEKLKK-GKAKDSQSKLKEDAEKAALEKIQQALMD 232 (359)
Q Consensus 183 i~~el~~~d~~~l~~~~~~~~~-~~~~~~~Sa~~~~~~~~ll~~i~~~L~~ 232 (359)
.. ..+.+.+.+..+.. ......+||+.+.++.++++.+.+.+++
T Consensus 156 -~~-----~~~~i~~~~~~~~~~~~~i~~vSA~~g~gi~~L~~~l~~~l~~ 200 (203)
T cd01888 156 -LE-----NYEQIKKFVKGTIAENAPIIPISAQLKYNIDVLLEYIVKKIPT 200 (203)
T ss_pred -HH-----HHHHHHHHHhccccCCCcEEEEeCCCCCCHHHHHHHHHHhCCC
Confidence 11 01112222211100 1112578999999999999999998875
No 173
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=99.32 E-value=7.7e-12 Score=110.39 Aligned_cols=148 Identities=16% Similarity=0.107 Sum_probs=88.4
Q ss_pred cEEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCCcCCCC
Q 018241 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGAS 136 (359)
Q Consensus 57 ~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~~~~~ 136 (359)
+||+++|.+|||||||++++.++.... ...|....+.....+.+++. ...+.+|||+|......
T Consensus 1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~~-~~~~T~g~~~~~~~i~~~~~---------------~~~l~iwDt~G~~~~~~ 64 (182)
T cd04128 1 LKIGLLGDAQIGKTSLMVKYVEGEFDE-DYIQTLGVNFMEKTISIRGT---------------EITFSIWDLGGQREFIN 64 (182)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCC-CCCCccceEEEEEEEEECCE---------------EEEEEEEeCCCchhHHH
Confidence 489999999999999999998554321 11221111121223333321 25689999999864432
Q ss_pred cCcchhhhHhhHHHhcccceEEeecCCCc-------------------cEEEeCCcccCCcchHHHHhhhhhccHHHHHH
Q 018241 137 QGEGLGNKFLSHIREVDSILQVVRCFEDN-------------------DIVHVNGKVDPKSDVDVINLELVFSDLDQIEK 197 (359)
Q Consensus 137 ~~~~~~~~~l~~i~~aD~il~Vvd~~~~~-------------------~v~~v~nk~d~~~~~~~i~~el~~~d~~~l~~ 197 (359)
.....+++||++++|+|+++.. ..+.+.||+|...+...-..+... +..+.
T Consensus 65 -------~~~~~~~~a~~iilv~D~t~~~s~~~i~~~~~~~~~~~~~~~pilVgnK~Dl~~~~~~~~~~~~~---~~~~~ 134 (182)
T cd04128 65 -------MLPLVCNDAVAILFMFDLTRKSTLNSIKEWYRQARGFNKTAIPILVGTKYDLFADLPPEEQEEIT---KQARK 134 (182)
T ss_pred -------hhHHHCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhccccccchhhhhhH---HHHHH
Confidence 2334568999999999987621 135788999975432110110000 11111
Q ss_pred HHHHHhhhccccccchhhHHHHHHHHHHHHHHhcC
Q 018241 198 RMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMD 232 (359)
Q Consensus 198 ~~~~~~~~~~~~~~Sa~~~~~~~~ll~~i~~~L~~ 232 (359)
+..... .....+||+.+.++.++++.+.+.+.+
T Consensus 135 -~a~~~~-~~~~e~SAk~g~~v~~lf~~l~~~l~~ 167 (182)
T cd04128 135 -YAKAMK-APLIFCSTSHSINVQKIFKIVLAKAFD 167 (182)
T ss_pred -HHHHcC-CEEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence 111111 111568999999999999999888754
No 174
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=99.32 E-value=7.6e-12 Score=131.81 Aligned_cols=146 Identities=18% Similarity=0.127 Sum_probs=98.2
Q ss_pred ccCCcEEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCCc
Q 018241 53 ISMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLV 132 (359)
Q Consensus 53 ~~~~~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~ 132 (359)
...++.|+|+|++|+|||||+++|.+. ....+..++.|.+.....+.++ +..+.||||||..
T Consensus 287 ~~R~pvV~ImGhvd~GKTSLl~~Lr~~-~v~~~e~~GIT~~iga~~v~~~-----------------~~~ItfiDTPGhe 348 (787)
T PRK05306 287 VPRPPVVTIMGHVDHGKTSLLDAIRKT-NVAAGEAGGITQHIGAYQVETN-----------------GGKITFLDTPGHE 348 (787)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHhC-CccccccCceeeeccEEEEEEC-----------------CEEEEEEECCCCc
Confidence 456789999999999999999999944 3344556777765544444443 3569999999987
Q ss_pred CCCCcCcchhhhHhhHHHhcccceEEeecCCC----------------ccEEEeCCcccCCc-chHHHHhhhhhccHHHH
Q 018241 133 KGASQGEGLGNKFLSHIREVDSILQVVRCFED----------------NDIVHVNGKVDPKS-DVDVINLELVFSDLDQI 195 (359)
Q Consensus 133 ~~~~~~~~~~~~~l~~i~~aD~il~Vvd~~~~----------------~~v~~v~nk~d~~~-~~~~i~~el~~~d~~~l 195 (359)
.+.. .....++.+|++++|+|+.+. .+++.+.||+|... +.+.+..++...+ .+
T Consensus 349 ~F~~-------m~~rga~~aDiaILVVdAddGv~~qT~e~i~~a~~~~vPiIVviNKiDl~~a~~e~V~~eL~~~~--~~ 419 (787)
T PRK05306 349 AFTA-------MRARGAQVTDIVVLVVAADDGVMPQTIEAINHAKAAGVPIIVAINKIDKPGANPDRVKQELSEYG--LV 419 (787)
T ss_pred cchh-------HHHhhhhhCCEEEEEEECCCCCCHhHHHHHHHHHhcCCcEEEEEECccccccCHHHHHHHHHHhc--cc
Confidence 6543 334556889999999998762 36889999999753 3333433332111 00
Q ss_pred HHHHHHHhhhccccccchhhHHHHHHHHHHHHH
Q 018241 196 EKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQ 228 (359)
Q Consensus 196 ~~~~~~~~~~~~~~~~Sa~~~~~~~~ll~~i~~ 228 (359)
.+.+.......++||+.+.++.++++.+..
T Consensus 420 ---~e~~g~~vp~vpvSAktG~GI~eLle~I~~ 449 (787)
T PRK05306 420 ---PEEWGGDTIFVPVSAKTGEGIDELLEAILL 449 (787)
T ss_pred ---HHHhCCCceEEEEeCCCCCCchHHHHhhhh
Confidence 011111111257899999999999888764
No 175
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.32 E-value=4.7e-12 Score=109.91 Aligned_cols=93 Identities=23% Similarity=0.212 Sum_probs=65.0
Q ss_pred EEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCCcCCCCc
Q 018241 58 RAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGASQ 137 (359)
Q Consensus 58 ~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~~~~~~ 137 (359)
+|+++|.+|||||||+|+++++.... ...|...+...+... +..+.++||||..+..
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~~~~~----~~~t~g~~~~~~~~~-----------------~~~~~i~D~~G~~~~~-- 57 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGEIPKK----VAPTVGFTPTKLRLD-----------------KYEVCIFDLGGGANFR-- 57 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCCcc----ccCcccceEEEEEEC-----------------CEEEEEEECCCcHHHH--
Confidence 48999999999999999999542111 112322333333332 3569999999974332
Q ss_pred CcchhhhHhhHHHhcccceEEeecCCC---------------------ccEEEeCCcccCCc
Q 018241 138 GEGLGNKFLSHIREVDSILQVVRCFED---------------------NDIVHVNGKVDPKS 178 (359)
Q Consensus 138 ~~~~~~~~l~~i~~aD~il~Vvd~~~~---------------------~~v~~v~nk~d~~~ 178 (359)
..+..++++||++++|+|+++. .+++.+.||.|...
T Consensus 58 -----~~~~~~~~~a~~ii~V~D~s~~~s~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~ 114 (167)
T cd04161 58 -----GIWVNYYAEAHGLVFVVDSSDDDRVQEVKEILRELLQHPRVSGKPILVLANKQDKKN 114 (167)
T ss_pred -----HHHHHHHcCCCEEEEEEECCchhHHHHHHHHHHHHHcCccccCCcEEEEEeCCCCcC
Confidence 2456778999999999998762 36788999999643
No 176
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=99.31 E-value=1e-11 Score=110.36 Aligned_cols=144 Identities=14% Similarity=0.134 Sum_probs=91.3
Q ss_pred CCcEEEEEecCCCChhHHHHHHHhccccccCCC-CceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCCcC
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANF-PFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVK 133 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~-p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~~ 133 (359)
..+||+++|.++||||||++++.++... .++ |..+.+...-.+.+++. ...+.+|||||...
T Consensus 5 ~~~KivviG~~~vGKTsll~~~~~~~~~--~~~~~t~~~~~~~~~i~~~~~---------------~~~l~iwDt~G~~~ 67 (189)
T cd04121 5 YLLKFLLVGDSDVGKGEILASLQDGSTE--SPYGYNMGIDYKTTTILLDGR---------------RVKLQLWDTSGQGR 67 (189)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCC--CCCCCcceeEEEEEEEEECCE---------------EEEEEEEeCCCcHH
Confidence 4489999999999999999999954322 122 11222222222333321 25689999999854
Q ss_pred CCCcCcchhhhHhhHHHhcccceEEeecCC-------------------CccEEEeCCcccCCcchHHHHhhhhhccHHH
Q 018241 134 GASQGEGLGNKFLSHIREVDSILQVVRCFE-------------------DNDIVHVNGKVDPKSDVDVINLELVFSDLDQ 194 (359)
Q Consensus 134 ~~~~~~~~~~~~l~~i~~aD~il~Vvd~~~-------------------~~~v~~v~nk~d~~~~~~~i~~el~~~d~~~ 194 (359)
... .+...++++|++++|+|.++ +.+++.+.||.|......... +.
T Consensus 68 ~~~-------l~~~~~~~ad~illVfD~t~~~Sf~~~~~w~~~i~~~~~~~piilVGNK~DL~~~~~v~~--------~~ 132 (189)
T cd04121 68 FCT-------IFRSYSRGAQGIILVYDITNRWSFDGIDRWIKEIDEHAPGVPKILVGNRLHLAFKRQVAT--------EQ 132 (189)
T ss_pred HHH-------HHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccchhccCCCH--------HH
Confidence 332 33456689999999999877 246889999999653221111 11
Q ss_pred HHHHHHHHhhhccccccchhhHHHHHHHHHHHHHHhcC
Q 018241 195 IEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMD 232 (359)
Q Consensus 195 l~~~~~~~~~~~~~~~~Sa~~~~~~~~ll~~i~~~L~~ 232 (359)
.+...... . .....+||+++.++.++++.+.+.+..
T Consensus 133 ~~~~a~~~-~-~~~~e~SAk~g~~V~~~F~~l~~~i~~ 168 (189)
T cd04121 133 AQAYAERN-G-MTFFEVSPLCNFNITESFTELARIVLM 168 (189)
T ss_pred HHHHHHHc-C-CEEEEecCCCCCCHHHHHHHHHHHHHH
Confidence 11111111 1 111467999999999999998876643
No 177
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=99.31 E-value=9.3e-12 Score=108.10 Aligned_cols=142 Identities=15% Similarity=0.128 Sum_probs=83.7
Q ss_pred cEEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCCcCCCC
Q 018241 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGAS 136 (359)
Q Consensus 57 ~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~~~~~ 136 (359)
.+|+++|.+|||||||++++++.... ....+..+.+.....+.+++. ...+.+|||||......
T Consensus 3 ~ki~vvG~~~vGKTsli~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~---------------~~~~~i~Dt~G~~~~~~ 66 (170)
T cd04115 3 FKIIVIGDSNVGKTCLTYRFCAGRFP-ERTEATIGVDFRERTVEIDGE---------------RIKVQLWDTAGQERFRK 66 (170)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCC-CccccceeEEEEEEEEEECCe---------------EEEEEEEeCCChHHHHH
Confidence 69999999999999999999954322 112222222222233333321 25689999999753321
Q ss_pred cCcchhhhHhhHHHhcccceEEeecCCC---------------------ccEEEeCCcccCCcchHHHHhhhhhccHHHH
Q 018241 137 QGEGLGNKFLSHIREVDSILQVVRCFED---------------------NDIVHVNGKVDPKSDVDVINLELVFSDLDQI 195 (359)
Q Consensus 137 ~~~~~~~~~l~~i~~aD~il~Vvd~~~~---------------------~~v~~v~nk~d~~~~~~~i~~el~~~d~~~l 195 (359)
. .....++++|++++|+|+++. .+++.+.||.|.......... ..
T Consensus 67 ---~---~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~--------~~ 132 (170)
T cd04115 67 ---S---MVQHYYRNVHAVVFVYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDLREQIQVPTD--------LA 132 (170)
T ss_pred ---h---hHHHhhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcCCCCCCEEEEEECccchhhcCCCHH--------HH
Confidence 0 123345789999999999762 367889999996532211000 01
Q ss_pred HHHHHHHhhhccccccchhh---HHHHHHHHHHHHHHh
Q 018241 196 EKRMEKLKKGKAKDSQSKLK---EDAEKAALEKIQQAL 230 (359)
Q Consensus 196 ~~~~~~~~~~~~~~~~Sa~~---~~~~~~ll~~i~~~L 230 (359)
.. ...-.. .....+||+. +.++.+++..+.+.+
T Consensus 133 ~~-~~~~~~-~~~~e~Sa~~~~~~~~i~~~f~~l~~~~ 168 (170)
T cd04115 133 QR-FADAHS-MPLFETSAKDPSENDHVEAIFMTLAHKL 168 (170)
T ss_pred HH-HHHHcC-CcEEEEeccCCcCCCCHHHHHHHHHHHh
Confidence 11 111111 1114568887 777888887776655
No 178
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.31 E-value=8.1e-12 Score=108.17 Aligned_cols=94 Identities=17% Similarity=0.210 Sum_probs=63.8
Q ss_pred EEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCCcCCCCc
Q 018241 58 RAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGASQ 137 (359)
Q Consensus 58 ~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~~~~~~ 137 (359)
.|+++|.+|||||||+++++++... ..+.. |.......+... +.++.+|||||......
T Consensus 1 ~i~ivG~~~vGKTsli~~~~~~~~~--~~~~p-t~g~~~~~i~~~-----------------~~~l~i~Dt~G~~~~~~- 59 (164)
T cd04162 1 QILVLGLDGAGKTSLLHSLSSERSL--ESVVP-TTGFNSVAIPTQ-----------------DAIMELLEIGGSQNLRK- 59 (164)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCc--ccccc-cCCcceEEEeeC-----------------CeEEEEEECCCCcchhH-
Confidence 4799999999999999999954321 11111 111111112111 46799999999864433
Q ss_pred CcchhhhHhhHHHhcccceEEeecCCC-------------------ccEEEeCCcccCCc
Q 018241 138 GEGLGNKFLSHIREVDSILQVVRCFED-------------------NDIVHVNGKVDPKS 178 (359)
Q Consensus 138 ~~~~~~~~l~~i~~aD~il~Vvd~~~~-------------------~~v~~v~nk~d~~~ 178 (359)
.+..++++||++++|+|+++. .+++.+.||.|...
T Consensus 60 ------~~~~~~~~ad~ii~V~D~t~~~s~~~~~~~l~~~~~~~~~~piilv~NK~Dl~~ 113 (164)
T cd04162 60 ------YWKRYLSGSQGLIFVVDSADSERLPLARQELHQLLQHPPDLPLVVLANKQDLPA 113 (164)
T ss_pred ------HHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHhCCCCCcEEEEEeCcCCcC
Confidence 445678999999999998762 35788999999653
No 179
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=99.31 E-value=1.2e-11 Score=107.79 Aligned_cols=146 Identities=18% Similarity=0.171 Sum_probs=85.5
Q ss_pred cEEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCCcCCCC
Q 018241 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGAS 136 (359)
Q Consensus 57 ~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~~~~~ 136 (359)
+||+++|.+|+|||||++++.++.. ...++.|+.+.....+.+++. ...+.+|||||..+...
T Consensus 1 ~k~~i~G~~~~GKtsl~~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~---------------~~~~~i~Dt~G~~~~~~ 63 (173)
T cd04130 1 LKCVLVGDGAVGKTSLIVSYTTNGY--PTEYVPTAFDNFSVVVLVDGK---------------PVRLQLCDTAGQDEFDK 63 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCC--CCCCCCceeeeeeEEEEECCE---------------EEEEEEEECCCChhhcc
Confidence 4899999999999999999985433 224444443332233333321 24688999999854433
Q ss_pred cCcchhhhHhhHHHhcccceEEeecCCC--------------------ccEEEeCCcccCCcchHHHHhhh----hhccH
Q 018241 137 QGEGLGNKFLSHIREVDSILQVVRCFED--------------------NDIVHVNGKVDPKSDVDVINLEL----VFSDL 192 (359)
Q Consensus 137 ~~~~~~~~~l~~i~~aD~il~Vvd~~~~--------------------~~v~~v~nk~d~~~~~~~i~~el----~~~d~ 192 (359)
. ....++++|++++|+|+++. .+++.+.||.|...+...+..-. ..-..
T Consensus 64 ~-------~~~~~~~a~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~ 136 (173)
T cd04130 64 L-------RPLCYPDTDVFLLCFSVVNPSSFQNISEKWIPEIRKHNPKAPIILVGTQADLRTDVNVLIQLARYGEKPVSQ 136 (173)
T ss_pred c-------cccccCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhhccChhHHHHHhhcCCCCcCH
Confidence 1 12245789999999998762 35788999999764432211000 00011
Q ss_pred HHHHHHHHHHhhhccccccchhhHHHHHHHHHHHH
Q 018241 193 DQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQ 227 (359)
Q Consensus 193 ~~l~~~~~~~~~~~~~~~~Sa~~~~~~~~ll~~i~ 227 (359)
+.... +.+-........+||+.+.|+.++++.+.
T Consensus 137 ~~~~~-~a~~~~~~~~~e~Sa~~~~~v~~lf~~~~ 170 (173)
T cd04130 137 SRAKA-LAEKIGACEYIECSALTQKNLKEVFDTAI 170 (173)
T ss_pred HHHHH-HHHHhCCCeEEEEeCCCCCCHHHHHHHHH
Confidence 11111 11111111114678899999888887653
No 180
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=99.30 E-value=7.3e-12 Score=129.09 Aligned_cols=146 Identities=17% Similarity=0.119 Sum_probs=95.8
Q ss_pred cEEEEEecCCCChhHHHHHHHhccc--cccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCCcCC
Q 018241 57 LRAGIVGLPNVGKSTLFNAVVENGK--AQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (359)
Q Consensus 57 ~~i~ivG~pn~GKSTL~n~L~~~~~--~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~~~ 134 (359)
+.|+++|++|+|||||+|+|+|... ......++.|++.....+..++ ..+.||||||..++
T Consensus 1 ~~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~-----------------~~v~~iDtPGhe~f 63 (581)
T TIGR00475 1 MIIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPD-----------------YRLGFIDVPGHEKF 63 (581)
T ss_pred CEEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeCC-----------------EEEEEEECCCHHHH
Confidence 4799999999999999999996431 1122345677666555555542 46999999997432
Q ss_pred CCcCcchhhhHhhHHHhcccceEEeecCCC----------------cc-EEEeCCcccCCcchHHHHhhhhhccHHHHHH
Q 018241 135 ASQGEGLGNKFLSHIREVDSILQVVRCFED----------------ND-IVHVNGKVDPKSDVDVINLELVFSDLDQIEK 197 (359)
Q Consensus 135 ~~~~~~~~~~~l~~i~~aD~il~Vvd~~~~----------------~~-v~~v~nk~d~~~~~~~i~~el~~~d~~~l~~ 197 (359)
.......+..+|++++|+|+.++ .+ ++.+.||+|.+.+. .+.. .. +.+..
T Consensus 64 -------~~~~~~g~~~aD~aILVVDa~~G~~~qT~ehl~il~~lgi~~iIVVlNK~Dlv~~~-~~~~--~~---~ei~~ 130 (581)
T TIGR00475 64 -------ISNAIAGGGGIDAALLVVDADEGVMTQTGEHLAVLDLLGIPHTIVVITKADRVNEE-EIKR--TE---MFMKQ 130 (581)
T ss_pred -------HHHHHhhhccCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEECCCCCCHH-HHHH--HH---HHHHH
Confidence 33556677899999999999862 23 78899999987432 1110 00 11111
Q ss_pred HHHHHhh--hccccccchhhHHHHHHHHHHHHHHhcC
Q 018241 198 RMEKLKK--GKAKDSQSKLKEDAEKAALEKIQQALMD 232 (359)
Q Consensus 198 ~~~~~~~--~~~~~~~Sa~~~~~~~~ll~~i~~~L~~ 232 (359)
....... .....++||+++.|+.++.+.+.+.++.
T Consensus 131 ~l~~~~~~~~~~ii~vSA~tG~GI~eL~~~L~~l~~~ 167 (581)
T TIGR00475 131 ILNSYIFLKNAKIFKTSAKTGQGIGELKKELKNLLES 167 (581)
T ss_pred HHHHhCCCCCCcEEEEeCCCCCCchhHHHHHHHHHHh
Confidence 1111110 1122578999999999988888777653
No 181
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=99.29 E-value=1.3e-11 Score=114.30 Aligned_cols=141 Identities=13% Similarity=0.096 Sum_probs=89.7
Q ss_pred cEEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCCcCCCC
Q 018241 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGAS 136 (359)
Q Consensus 57 ~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~~~~~ 136 (359)
.+|+++|.+|||||||+++++++.... .+..|+.+.....+.+.+. ..++.+|||||......
T Consensus 1 ~KVvvlG~~gvGKTSLi~r~~~~~f~~--~y~pTi~d~~~k~~~i~~~---------------~~~l~I~Dt~G~~~~~~ 63 (247)
T cd04143 1 YRMVVLGASKVGKTAIVSRFLGGRFEE--QYTPTIEDFHRKLYSIRGE---------------VYQLDILDTSGNHPFPA 63 (247)
T ss_pred CEEEEECcCCCCHHHHHHHHHcCCCCC--CCCCChhHhEEEEEEECCE---------------EEEEEEEECCCChhhhH
Confidence 379999999999999999998554322 3444443444334444321 24688999999854432
Q ss_pred cCcchhhhHhhHHHhcccceEEeecCC-----------------------------CccEEEeCCcccCCcchHHHHhhh
Q 018241 137 QGEGLGNKFLSHIREVDSILQVVRCFE-----------------------------DNDIVHVNGKVDPKSDVDVINLEL 187 (359)
Q Consensus 137 ~~~~~~~~~l~~i~~aD~il~Vvd~~~-----------------------------~~~v~~v~nk~d~~~~~~~i~~el 187 (359)
.....++++|++++|+|+++ +.+++.+.||+|...+...
T Consensus 64 -------~~~~~~~~ad~iIlVfdv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~~v----- 131 (247)
T cd04143 64 -------MRRLSILTGDVFILVFSLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFPREV----- 131 (247)
T ss_pred -------HHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchhcccc-----
Confidence 12234678999999999765 2357889999997532211
Q ss_pred hhccHHHHHHHHHHHhhhccccccchhhHHHHHHHHHHHHHHh
Q 018241 188 VFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQAL 230 (359)
Q Consensus 188 ~~~d~~~l~~~~~~~~~~~~~~~~Sa~~~~~~~~ll~~i~~~L 230 (359)
..+.+........ ......+||+.+.++.++++.+...+
T Consensus 132 ---~~~ei~~~~~~~~-~~~~~evSAktg~gI~elf~~L~~~~ 170 (247)
T cd04143 132 ---QRDEVEQLVGGDE-NCAYFEVSAKKNSNLDEMFRALFSLA 170 (247)
T ss_pred ---CHHHHHHHHHhcC-CCEEEEEeCCCCCCHHHHHHHHHHHh
Confidence 1111222111110 11115689999999999999998876
No 182
>CHL00071 tufA elongation factor Tu
Probab=99.29 E-value=1.1e-11 Score=122.99 Aligned_cols=101 Identities=21% Similarity=0.183 Sum_probs=70.4
Q ss_pred CCcEEEEEecCCCChhHHHHHHHhccccc---------------cCCCCceeccceeEEEEeCCCccchhcccccccccc
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQ---------------AANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAV 119 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~~~~~~~---------------~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~ 119 (359)
..++|+++|++|+|||||+|+|++..... ..-.++.|++.....+...
T Consensus 11 ~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~----------------- 73 (409)
T CHL00071 11 PHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYETE----------------- 73 (409)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEccC-----------------
Confidence 45899999999999999999999542211 1112455554433222221
Q ss_pred CceEEEEecCCCcCCCCcCcchhhhHhhHHHhcccceEEeecCCC----------------cc-EEEeCCcccCCcc
Q 018241 120 PASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFED----------------ND-IVHVNGKVDPKSD 179 (359)
Q Consensus 120 ~~~i~lvDtpG~~~~~~~~~~~~~~~l~~i~~aD~il~Vvd~~~~----------------~~-v~~v~nk~d~~~~ 179 (359)
+.++.|+||||..+ +.......+..+|++++|+|+.+. .+ ++.+.||+|.+.+
T Consensus 74 ~~~~~~iDtPGh~~-------~~~~~~~~~~~~D~~ilVvda~~g~~~qt~~~~~~~~~~g~~~iIvvvNK~D~~~~ 143 (409)
T CHL00071 74 NRHYAHVDCPGHAD-------YVKNMITGAAQMDGAILVVSAADGPMPQTKEHILLAKQVGVPNIVVFLNKEDQVDD 143 (409)
T ss_pred CeEEEEEECCChHH-------HHHHHHHHHHhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEEccCCCCH
Confidence 46799999999642 333557778899999999999763 23 5678999998753
No 183
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=99.29 E-value=2.2e-11 Score=110.84 Aligned_cols=94 Identities=18% Similarity=0.141 Sum_probs=64.1
Q ss_pred cEEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCCcCCCC
Q 018241 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGAS 136 (359)
Q Consensus 57 ~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~~~~~ 136 (359)
+||+++|.+|||||||+++++++.... ..| |.........+. ...+.+|||||...+..
T Consensus 1 ~KIvivG~~~vGKTSLi~r~~~~~f~~--~~~--Tig~~~~~~~~~-----------------~~~l~iwDt~G~e~~~~ 59 (220)
T cd04126 1 LKVVLLGDMNVGKTSLLHRYMERRFKD--TVS--TVGGAFYLKQWG-----------------PYNISIWDTAGREQFHG 59 (220)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCC--CCC--ccceEEEEEEee-----------------EEEEEEEeCCCcccchh
Confidence 489999999999999999999554321 111 221111111111 35689999999865433
Q ss_pred cCcchhhhHhhHHHhcccceEEeecCCC--------------------ccEEEeCCcccCCc
Q 018241 137 QGEGLGNKFLSHIREVDSILQVVRCFED--------------------NDIVHVNGKVDPKS 178 (359)
Q Consensus 137 ~~~~~~~~~l~~i~~aD~il~Vvd~~~~--------------------~~v~~v~nk~d~~~ 178 (359)
.....++++|++++|+|+++. .+++.+.||.|...
T Consensus 60 -------l~~~~~~~ad~~IlV~Dvt~~~Sf~~l~~~~~~l~~~~~~~~piIlVgNK~DL~~ 114 (220)
T cd04126 60 -------LGSMYCRGAAAVILTYDVSNVQSLEELEDRFLGLTDTANEDCLFAVVGNKLDLTE 114 (220)
T ss_pred -------hHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccccc
Confidence 223346899999999998872 35789999999764
No 184
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.28 E-value=2.4e-11 Score=107.72 Aligned_cols=150 Identities=14% Similarity=0.053 Sum_probs=86.9
Q ss_pred cEEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCCcCCCC
Q 018241 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGAS 136 (359)
Q Consensus 57 ~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~~~~~ 136 (359)
.||+++|.+|||||||+++++++.... .+..|..+.....+.+++. ...+.+|||||......
T Consensus 1 ~kivivG~~~vGKTsli~~~~~~~~~~--~~~~t~~~~~~~~i~~~~~---------------~~~l~i~Dt~G~~~~~~ 63 (189)
T cd04134 1 RKVVVLGDGACGKTSLLNVFTRGYFPQ--VYEPTVFENYVHDIFVDGL---------------HIELSLWDTAGQEEFDR 63 (189)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCC--ccCCcceeeeEEEEEECCE---------------EEEEEEEECCCChhccc
Confidence 489999999999999999999554432 1111111111112222211 24689999999854432
Q ss_pred cCcchhhhHhhHHHhcccceEEeecCC--------------------CccEEEeCCcccCCcchHHHHh--hhh--hccH
Q 018241 137 QGEGLGNKFLSHIREVDSILQVVRCFE--------------------DNDIVHVNGKVDPKSDVDVINL--ELV--FSDL 192 (359)
Q Consensus 137 ~~~~~~~~~l~~i~~aD~il~Vvd~~~--------------------~~~v~~v~nk~d~~~~~~~i~~--el~--~~d~ 192 (359)
+ ....++.+|++++|+|.++ +.+++.+.||.|...+...... ... ....
T Consensus 64 ----l---~~~~~~~a~~~ilv~dv~~~~sf~~~~~~~~~~i~~~~~~~piilvgNK~Dl~~~~~~~~~~~~~~~~~v~~ 136 (189)
T cd04134 64 ----L---RSLSYADTDVIMLCFSVDSPDSLENVESKWLGEIREHCPGVKLVLVALKCDLREARNERDDLQRYGKHTISY 136 (189)
T ss_pred ----c---ccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccChhhHHHHhhccCCCCCH
Confidence 1 1224578999999999776 2358899999997654321110 000 0011
Q ss_pred HHHHHHHHHHhhhccccccchhhHHHHHHHHHHHHHHhc
Q 018241 193 DQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALM 231 (359)
Q Consensus 193 ~~l~~~~~~~~~~~~~~~~Sa~~~~~~~~ll~~i~~~L~ 231 (359)
+.......... ......+||+++.++.++++.+.+.+.
T Consensus 137 ~~~~~~~~~~~-~~~~~e~SAk~~~~v~e~f~~l~~~~~ 174 (189)
T cd04134 137 EEGLAVAKRIN-ALRYLECSAKLNRGVNEAFTEAARVAL 174 (189)
T ss_pred HHHHHHHHHcC-CCEEEEccCCcCCCHHHHHHHHHHHHh
Confidence 11111111111 011146799999999999988887774
No 185
>CHL00189 infB translation initiation factor 2; Provisional
Probab=99.28 E-value=1.2e-11 Score=129.28 Aligned_cols=153 Identities=18% Similarity=0.115 Sum_probs=97.7
Q ss_pred cccCCcEEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCC
Q 018241 52 KISMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGL 131 (359)
Q Consensus 52 ~~~~~~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~ 131 (359)
....++.|+|+|++|+|||||+++|++.. ...+..++.|.+.....+.+.. . .....+.||||||.
T Consensus 240 l~~r~p~V~IvGhvdvGKTSLld~L~~~~-~~~~e~~GiTq~i~~~~v~~~~----------~---~~~~kItfiDTPGh 305 (742)
T CHL00189 240 SINRPPIVTILGHVDHGKTTLLDKIRKTQ-IAQKEAGGITQKIGAYEVEFEY----------K---DENQKIVFLDTPGH 305 (742)
T ss_pred hcccCCEEEEECCCCCCHHHHHHHHHhcc-CccccCCccccccceEEEEEEe----------c---CCceEEEEEECCcH
Confidence 34566899999999999999999999443 3344556677554433333220 0 00357999999998
Q ss_pred cCCCCcCcchhhhHhhHHHhcccceEEeecCCC----------------ccEEEeCCcccCCc-chHHHHhhhhhccHHH
Q 018241 132 VKGASQGEGLGNKFLSHIREVDSILQVVRCFED----------------NDIVHVNGKVDPKS-DVDVINLELVFSDLDQ 194 (359)
Q Consensus 132 ~~~~~~~~~~~~~~l~~i~~aD~il~Vvd~~~~----------------~~v~~v~nk~d~~~-~~~~i~~el~~~d~~~ 194 (359)
..+.. .....++.+|++++|||+.+. .+++.+.||+|... +.+.+..++...++
T Consensus 306 e~F~~-------mr~rg~~~aDiaILVVDA~dGv~~QT~E~I~~~k~~~iPiIVViNKiDl~~~~~e~v~~eL~~~~l-- 376 (742)
T CHL00189 306 EAFSS-------MRSRGANVTDIAILIIAADDGVKPQTIEAINYIQAANVPIIVAINKIDKANANTERIKQQLAKYNL-- 376 (742)
T ss_pred HHHHH-------HHHHHHHHCCEEEEEEECcCCCChhhHHHHHHHHhcCceEEEEEECCCccccCHHHHHHHHHHhcc--
Confidence 54322 344567889999999998763 35788999999753 23333333221110
Q ss_pred HHHHHHHHhhhccccccchhhHHHHHHHHHHHHHHh
Q 018241 195 IEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQAL 230 (359)
Q Consensus 195 l~~~~~~~~~~~~~~~~Sa~~~~~~~~ll~~i~~~L 230 (359)
+. ..+.......++||+.+.++.++++.+....
T Consensus 377 l~---e~~g~~vpvv~VSAktG~GIdeLle~I~~l~ 409 (742)
T CHL00189 377 IP---EKWGGDTPMIPISASQGTNIDKLLETILLLA 409 (742)
T ss_pred ch---HhhCCCceEEEEECCCCCCHHHHHHhhhhhh
Confidence 00 0111111125789999999999998887654
No 186
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=99.27 E-value=2.1e-11 Score=108.93 Aligned_cols=100 Identities=21% Similarity=0.263 Sum_probs=60.7
Q ss_pred CcEEEEEecCCCChhHHHHHHHhccccccCCC----CceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCC
Q 018241 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANF----PFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGL 131 (359)
Q Consensus 56 ~~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~----p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~ 131 (359)
+++|+++|.+|||||||+|+|+|......... ..+|... ..+..++ ...+.+|||||+
T Consensus 1 ~~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~--~~~~~~~----------------~~~l~l~DtpG~ 62 (197)
T cd04104 1 PLNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKR--TPYPHPK----------------FPNVTLWDLPGI 62 (197)
T ss_pred CeEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCc--eeeecCC----------------CCCceEEeCCCC
Confidence 36899999999999999999996433211111 1112111 1111110 246899999999
Q ss_pred cCCCCcCcchhhhHhhH--HHhcccceEEeecCC--------------CccEEEeCCcccCC
Q 018241 132 VKGASQGEGLGNKFLSH--IREVDSILQVVRCFE--------------DNDIVHVNGKVDPK 177 (359)
Q Consensus 132 ~~~~~~~~~~~~~~l~~--i~~aD~il~Vvd~~~--------------~~~v~~v~nk~d~~ 177 (359)
.+..... ..++.. +.++|++++|.|..- ..+++.|.||+|..
T Consensus 63 ~~~~~~~----~~~l~~~~~~~~d~~l~v~~~~~~~~d~~~~~~l~~~~~~~ilV~nK~D~~ 120 (197)
T cd04104 63 GSTAFPP----DDYLEEMKFSEYDFFIIISSTRFSSNDVKLAKAIQCMGKKFYFVRTKVDRD 120 (197)
T ss_pred CcccCCH----HHHHHHhCccCcCEEEEEeCCCCCHHHHHHHHHHHHhCCCEEEEEecccch
Confidence 6543221 123222 467899988865431 23578899999975
No 187
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=99.27 E-value=8.5e-12 Score=126.95 Aligned_cols=100 Identities=15% Similarity=0.128 Sum_probs=55.9
Q ss_pred CcEEEEEecCCCChhHHHHHHHh--ccccccCCCCceeccceeEEEE---eCCCccchhccccccccccCceEEEEecCC
Q 018241 56 SLRAGIVGLPNVGKSTLFNAVVE--NGKAQAANFPFCTIEPNVGIVA---VPDPRLHVLSGLSKSQKAVPASVEFVDIAG 130 (359)
Q Consensus 56 ~~~i~ivG~pn~GKSTL~n~L~~--~~~~~~~~~p~tT~~~~~g~~~---~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG 130 (359)
..+|+|+|++|+|||||+++|+. +.....+...+.+ +....... ...+|-..+.....+..+.+.++.+|||||
T Consensus 10 ~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~-~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliDTPG 88 (526)
T PRK00741 10 RRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRK-SGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLDTPG 88 (526)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccc-cCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEEECCC
Confidence 35999999999999999999972 2111111111100 00000000 000000000001111223357899999999
Q ss_pred CcCCCCcCcchhhhHhhHHHhcccceEEeecCC
Q 018241 131 LVKGASQGEGLGNKFLSHIREVDSILQVVRCFE 163 (359)
Q Consensus 131 ~~~~~~~~~~~~~~~l~~i~~aD~il~Vvd~~~ 163 (359)
..++.. .....++.+|++++|+|+.+
T Consensus 89 ~~df~~-------~~~~~l~~aD~aIlVvDa~~ 114 (526)
T PRK00741 89 HEDFSE-------DTYRTLTAVDSALMVIDAAK 114 (526)
T ss_pred chhhHH-------HHHHHHHHCCEEEEEEecCC
Confidence 965543 56777899999999999853
No 188
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.26 E-value=2.9e-11 Score=110.02 Aligned_cols=139 Identities=17% Similarity=0.124 Sum_probs=85.3
Q ss_pred cEEEEEecCCCChhHHHHHHHhccccccCCCCceec--cceeEEEEeCCCccchhccccccccccCceEEEEecCCCcCC
Q 018241 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTI--EPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (359)
Q Consensus 57 ~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~--~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~~~ 134 (359)
.||+++|.+|||||||+++++++... ...++ +|. +.....+.+... ...+.+|||||....
T Consensus 1 ~KI~lvG~~gvGKTsLi~~~~~~~~~-~~~~~-~t~~~~~~~~~i~~~~~---------------~~~l~i~Dt~G~~~~ 63 (221)
T cd04148 1 YRVVMLGSPGVGKSSLASQFTSGEYD-DHAYD-ASGDDDTYERTVSVDGE---------------ESTLVVIDHWEQEMW 63 (221)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCcC-ccCcC-CCccccceEEEEEECCE---------------EEEEEEEeCCCcchH
Confidence 48999999999999999999744432 11222 121 222223333221 356999999998611
Q ss_pred CCcCcchhhhHhhHHH-hcccceEEeecCCC---------------------ccEEEeCCcccCCcchHHHHhhhhhccH
Q 018241 135 ASQGEGLGNKFLSHIR-EVDSILQVVRCFED---------------------NDIVHVNGKVDPKSDVDVINLELVFSDL 192 (359)
Q Consensus 135 ~~~~~~~~~~~l~~i~-~aD~il~Vvd~~~~---------------------~~v~~v~nk~d~~~~~~~i~~el~~~d~ 192 (359)
+.. ..++ ++|++++|+|+++. .+++.+.||+|..+.......
T Consensus 64 ------~~~---~~~~~~ad~iilV~d~td~~S~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~~~v~~~------- 127 (221)
T cd04148 64 ------TED---SCMQYQGDAFVVVYSVTDRSSFERASELRIQLRRNRQLEDRPIILVGNKSDLARSREVSVQ------- 127 (221)
T ss_pred ------HHh---HHhhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhccccceecHH-------
Confidence 111 2234 89999999999762 368899999996543211111
Q ss_pred HHHHHHHHHHhhhccccccchhhHHHHHHHHHHHHHHhc
Q 018241 193 DQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALM 231 (359)
Q Consensus 193 ~~l~~~~~~~~~~~~~~~~Sa~~~~~~~~ll~~i~~~L~ 231 (359)
.. +.+..... .....+||+.+.++.++++.+...+.
T Consensus 128 -~~-~~~a~~~~-~~~~e~SA~~~~gv~~l~~~l~~~~~ 163 (221)
T cd04148 128 -EG-RACAVVFD-CKFIETSAGLQHNVDELLEGIVRQIR 163 (221)
T ss_pred -HH-HHHHHHcC-CeEEEecCCCCCCHHHHHHHHHHHHH
Confidence 01 11111101 11146799999999999998888774
No 189
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=99.26 E-value=3.2e-11 Score=105.73 Aligned_cols=140 Identities=21% Similarity=0.186 Sum_probs=92.4
Q ss_pred cCCcEEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCCcC
Q 018241 54 SMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVK 133 (359)
Q Consensus 54 ~~~~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~~ 133 (359)
....+|.++|++|||||||++.|..+.... +..|...+...+.+. +..+.++|.+|-..
T Consensus 12 ~~~~~ililGl~~sGKTtll~~l~~~~~~~----~~pT~g~~~~~i~~~-----------------~~~~~~~d~gG~~~ 70 (175)
T PF00025_consen 12 KKEIKILILGLDGSGKTTLLNRLKNGEISE----TIPTIGFNIEEIKYK-----------------GYSLTIWDLGGQES 70 (175)
T ss_dssp TSEEEEEEEESTTSSHHHHHHHHHSSSEEE----EEEESSEEEEEEEET-----------------TEEEEEEEESSSGG
T ss_pred CcEEEEEEECCCccchHHHHHHhhhccccc----cCcccccccceeeeC-----------------cEEEEEEecccccc
Confidence 345799999999999999999998443322 223444445555554 46799999999854
Q ss_pred CCCcCcchhhhHhhHHHhcccceEEeecCCC---------------------ccEEEeCCcccCCcc--hHHHHhhhhhc
Q 018241 134 GASQGEGLGNKFLSHIREVDSILQVVRCFED---------------------NDIVHVNGKVDPKSD--VDVINLELVFS 190 (359)
Q Consensus 134 ~~~~~~~~~~~~l~~i~~aD~il~Vvd~~~~---------------------~~v~~v~nk~d~~~~--~~~i~~el~~~ 190 (359)
..+ .+...+.++|++++|||+++. .|+....||.|.... .+.+...+.+.
T Consensus 71 ~~~-------~w~~y~~~~~~iIfVvDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~~~~~~~i~~~l~l~ 143 (175)
T PF00025_consen 71 FRP-------LWKSYFQNADGIIFVVDSSDPERLQEAKEELKELLNDPELKDIPILILANKQDLPDAMSEEEIKEYLGLE 143 (175)
T ss_dssp GGG-------GGGGGHTTESEEEEEEETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTTSSTHHHHHHHTTGG
T ss_pred ccc-------cceeeccccceeEEEEecccceeecccccchhhhcchhhcccceEEEEeccccccCcchhhHHHhhhhhh
Confidence 333 445667889999999999872 357888899996543 22333322222
Q ss_pred cHHHHHHHHHHHhhhccccccchhhHHHHHHHHHHHHHH
Q 018241 191 DLDQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQA 229 (359)
Q Consensus 191 d~~~l~~~~~~~~~~~~~~~~Sa~~~~~~~~ll~~i~~~ 229 (359)
.+. -.........||.++.++.+.++.+.+.
T Consensus 144 ~l~--------~~~~~~v~~~sa~~g~Gv~e~l~WL~~~ 174 (175)
T PF00025_consen 144 KLK--------NKRPWSVFSCSAKTGEGVDEGLEWLIEQ 174 (175)
T ss_dssp GTT--------SSSCEEEEEEBTTTTBTHHHHHHHHHHH
T ss_pred hcc--------cCCceEEEeeeccCCcCHHHHHHHHHhc
Confidence 211 0001111467889999998888877654
No 190
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=99.25 E-value=1.6e-11 Score=113.64 Aligned_cols=93 Identities=22% Similarity=0.283 Sum_probs=64.7
Q ss_pred cccCCcEEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCC
Q 018241 52 KISMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGL 131 (359)
Q Consensus 52 ~~~~~~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~ 131 (359)
.....++|+++|.+|||||||+|+|+|...+.++.++.+|........... +..+.+|||||+
T Consensus 27 ~~~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~~~T~~~~~~~~~~~-----------------g~~i~vIDTPGl 89 (249)
T cd01853 27 ELDFSLTILVLGKTGVGKSSTINSIFGERKAATSAFQSETLRVREVSGTVD-----------------GFKLNIIDTPGL 89 (249)
T ss_pred hccCCeEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEEC-----------------CeEEEEEECCCc
Confidence 444668999999999999999999998888888888888877666555443 356999999999
Q ss_pred cCCCCc---CcchhhhHhhHHH--hcccceEEeec
Q 018241 132 VKGASQ---GEGLGNKFLSHIR--EVDSILQVVRC 161 (359)
Q Consensus 132 ~~~~~~---~~~~~~~~l~~i~--~aD~il~Vvd~ 161 (359)
.+.... ...........+. ..|++++|.+.
T Consensus 90 ~~~~~~~~~~~~~~~~I~~~l~~~~idvIL~V~rl 124 (249)
T cd01853 90 LESVMDQRVNRKILSSIKRYLKKKTPDVVLYVDRL 124 (249)
T ss_pred CcchhhHHHHHHHHHHHHHHHhccCCCEEEEEEcC
Confidence 765321 1111111222222 46777777554
No 191
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=99.24 E-value=4.4e-11 Score=106.27 Aligned_cols=151 Identities=19% Similarity=0.157 Sum_probs=88.1
Q ss_pred CcEEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCCcCCC
Q 018241 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA 135 (359)
Q Consensus 56 ~~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~~~~ 135 (359)
.+||+++|.+|||||||++++..+.... .+..|..+.....+.+++. ...+.+|||||.....
T Consensus 3 ~~ki~~vG~~~vGKTsli~~~~~~~f~~--~~~~t~~~~~~~~~~~~~~---------------~~~l~i~Dt~G~e~~~ 65 (191)
T cd01875 3 SIKCVVVGDGAVGKTCLLICYTTNAFPK--EYIPTVFDNYSAQTAVDGR---------------TVSLNLWDTAGQEEYD 65 (191)
T ss_pred cEEEEEECCCCCCHHHHHHHHHhCCCCc--CCCCceEeeeEEEEEECCE---------------EEEEEEEECCCchhhh
Confidence 3799999999999999999999543321 1211111111111222221 2568999999996544
Q ss_pred CcCcchhhhHhhHHHhcccceEEeecCC--------------------CccEEEeCCcccCCcchHHHHh--hhhhc--c
Q 018241 136 SQGEGLGNKFLSHIREVDSILQVVRCFE--------------------DNDIVHVNGKVDPKSDVDVINL--ELVFS--D 191 (359)
Q Consensus 136 ~~~~~~~~~~l~~i~~aD~il~Vvd~~~--------------------~~~v~~v~nk~d~~~~~~~i~~--el~~~--d 191 (359)
. .....+++||++++|+|.++ +.+++.+.||.|...+...... +.... .
T Consensus 66 ~-------l~~~~~~~a~~~ilvydit~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~~~~~~~~~~~~~~~~~v~ 138 (191)
T cd01875 66 R-------LRTLSYPQTNVFIICFSIASPSSYENVRHKWHPEVCHHCPNVPILLVGTKKDLRNDADTLKKLKEQGQAPIT 138 (191)
T ss_pred h-------hhhhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEeChhhhcChhhHHHHhhccCCCCC
Confidence 3 22345688999999999876 2367889999996543221111 01111 1
Q ss_pred HHHHHHHHHHHhhhccccccchhhHHHHHHHHHHHHHHhc
Q 018241 192 LDQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALM 231 (359)
Q Consensus 192 ~~~l~~~~~~~~~~~~~~~~Sa~~~~~~~~ll~~i~~~L~ 231 (359)
.+..+. +.+-........+||+.+.|+.++++.+.+.+-
T Consensus 139 ~~~~~~-~a~~~~~~~~~e~SAk~g~~v~e~f~~l~~~~~ 177 (191)
T cd01875 139 PQQGGA-LAKQIHAVKYLECSALNQDGVKEVFAEAVRAVL 177 (191)
T ss_pred HHHHHH-HHHHcCCcEEEEeCCCCCCCHHHHHHHHHHHHh
Confidence 111111 111011111146789999999999988887663
No 192
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=99.24 E-value=3.7e-11 Score=124.10 Aligned_cols=146 Identities=18% Similarity=0.144 Sum_probs=91.9
Q ss_pred cEEEEEecCCCChhHHHHHHHhccccccC--------C------CCceeccceeEEEEeCCCccchhccccccccccCce
Q 018241 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAA--------N------FPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPAS 122 (359)
Q Consensus 57 ~~i~ivG~pn~GKSTL~n~L~~~~~~~~~--------~------~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~ 122 (359)
.+|+|+|++++|||||+++|+....+... + ..|.|++.....+.+.. ......+
T Consensus 4 RNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~------------~~g~~~~ 71 (595)
T TIGR01393 4 RNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKA------------KDGETYV 71 (595)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEc------------CCCCEEE
Confidence 48999999999999999999843222110 0 11333333222222210 0001257
Q ss_pred EEEEecCCCcCCCCcCcchhhhHhhHHHhcccceEEeecCCC----------------ccEEEeCCcccCCcc-hHHHHh
Q 018241 123 VEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFED----------------NDIVHVNGKVDPKSD-VDVINL 185 (359)
Q Consensus 123 i~lvDtpG~~~~~~~~~~~~~~~l~~i~~aD~il~Vvd~~~~----------------~~v~~v~nk~d~~~~-~~~i~~ 185 (359)
+.||||||..++.. .....++.||++++|+|+++. .+++.+.||+|.... .+.+..
T Consensus 72 l~liDTPG~~dF~~-------~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~~~~ipiIiViNKiDl~~~~~~~~~~ 144 (595)
T TIGR01393 72 LNLIDTPGHVDFSY-------EVSRSLAACEGALLLVDAAQGIEAQTLANVYLALENDLEIIPVINKIDLPSADPERVKK 144 (595)
T ss_pred EEEEECCCcHHHHH-------HHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHHHcCCCEEEEEECcCCCccCHHHHHH
Confidence 99999999986544 456678999999999999873 257889999996421 111111
Q ss_pred hhhhccHHHHHHHHHHHhhhc-cccccchhhHHHHHHHHHHHHHHhcC
Q 018241 186 ELVFSDLDQIEKRMEKLKKGK-AKDSQSKLKEDAEKAALEKIQQALMD 232 (359)
Q Consensus 186 el~~~d~~~l~~~~~~~~~~~-~~~~~Sa~~~~~~~~ll~~i~~~L~~ 232 (359)
+ +.+.+ .... ....+||+++.|+.++++.+.+.++.
T Consensus 145 e--------l~~~l---g~~~~~vi~vSAktG~GI~~Lle~I~~~lp~ 181 (595)
T TIGR01393 145 E--------IEEVI---GLDASEAILASAKTGIGIEEILEAIVKRVPP 181 (595)
T ss_pred H--------HHHHh---CCCcceEEEeeccCCCCHHHHHHHHHHhCCC
Confidence 1 11111 1000 11467999999999999999998864
No 193
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=99.24 E-value=1.2e-11 Score=106.49 Aligned_cols=57 Identities=25% Similarity=0.414 Sum_probs=47.1
Q ss_pred CCcEEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCC
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGL 131 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~ 131 (359)
...+|+++|.||||||||+|+|.+...+.+++.|++|++... +.. +..+.++||||+
T Consensus 101 ~~~~v~~~G~~nvGKStliN~l~~~~~~~~~~~~g~T~~~~~--~~~------------------~~~~~liDtPGi 157 (157)
T cd01858 101 KQISVGFIGYPNVGKSSIINTLRSKKVCKVAPIPGETKVWQY--ITL------------------MKRIYLIDCPGV 157 (157)
T ss_pred cceEEEEEeCCCCChHHHHHHHhcCCceeeCCCCCeeEeEEE--EEc------------------CCCEEEEECcCC
Confidence 357899999999999999999998888899999999976432 222 234899999996
No 194
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=99.24 E-value=6.8e-11 Score=103.89 Aligned_cols=149 Identities=17% Similarity=0.113 Sum_probs=88.8
Q ss_pred cEEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCCcCCCC
Q 018241 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGAS 136 (359)
Q Consensus 57 ~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~~~~~ 136 (359)
+||+++|.+++|||||+.++..+... . .+..|..+...-.+.+++. ...+.+|||+|..+...
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~~~f~-~-~~~~Ti~~~~~~~~~~~~~---------------~v~l~i~Dt~G~~~~~~ 64 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTSNKFP-T-DYIPTVFDNFSANVSVDGN---------------TVNLGLWDTAGQEDYNR 64 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCCC-C-CCCCcceeeeEEEEEECCE---------------EEEEEEEECCCCccccc
Confidence 58999999999999999999954432 1 2221221111112222221 25689999999865544
Q ss_pred cCcchhhhHhhHHHhcccceEEeecCC--------------------CccEEEeCCcccCCcchHHHHhhhhh--ccHHH
Q 018241 137 QGEGLGNKFLSHIREVDSILQVVRCFE--------------------DNDIVHVNGKVDPKSDVDVINLELVF--SDLDQ 194 (359)
Q Consensus 137 ~~~~~~~~~l~~i~~aD~il~Vvd~~~--------------------~~~v~~v~nk~d~~~~~~~i~~el~~--~d~~~ 194 (359)
.....+++||++++|+|.++ +.+++.+.||+|..++......+... -..+.
T Consensus 65 -------~~~~~~~~a~~~ilvyd~~~~~Sf~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~v~~~~ 137 (176)
T cd04133 65 -------LRPLSYRGADVFVLAFSLISRASYENVLKKWVPELRHYAPNVPIVLVGTKLDLRDDKQYLADHPGASPITTAQ 137 (176)
T ss_pred -------cchhhcCCCcEEEEEEEcCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhccChhhhhhccCCCCCCHHH
Confidence 22345689999999999876 23578899999975432211000000 00111
Q ss_pred HHHHHHHHhhhccccccchhhHHHHHHHHHHHHHHh
Q 018241 195 IEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQAL 230 (359)
Q Consensus 195 l~~~~~~~~~~~~~~~~Sa~~~~~~~~ll~~i~~~L 230 (359)
... +.+-........+||+++.++.++++.+.+.+
T Consensus 138 ~~~-~a~~~~~~~~~E~SAk~~~nV~~~F~~~~~~~ 172 (176)
T cd04133 138 GEE-LRKQIGAAAYIECSSKTQQNVKAVFDAAIKVV 172 (176)
T ss_pred HHH-HHHHcCCCEEEECCCCcccCHHHHHHHHHHHH
Confidence 111 11111111114579999999999999988866
No 195
>PRK12735 elongation factor Tu; Reviewed
Probab=99.24 E-value=1.9e-11 Score=120.75 Aligned_cols=101 Identities=20% Similarity=0.183 Sum_probs=67.5
Q ss_pred cCCcEEEEEecCCCChhHHHHHHHhcc------ccc---------cCCCCceeccceeEEEEeCCCccchhccccccccc
Q 018241 54 SMSLRAGIVGLPNVGKSTLFNAVVENG------KAQ---------AANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKA 118 (359)
Q Consensus 54 ~~~~~i~ivG~pn~GKSTL~n~L~~~~------~~~---------~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~ 118 (359)
...++|+++|++|+|||||+++|++.. ... ..-..+.|++.....+..
T Consensus 10 ~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~----------------- 72 (396)
T PRK12735 10 KPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYET----------------- 72 (396)
T ss_pred CCeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcC-----------------
Confidence 355899999999999999999999521 100 001334454432222211
Q ss_pred cCceEEEEecCCCcCCCCcCcchhhhHhhHHHhcccceEEeecCCC----------------cc-EEEeCCcccCCc
Q 018241 119 VPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFED----------------ND-IVHVNGKVDPKS 178 (359)
Q Consensus 119 ~~~~i~lvDtpG~~~~~~~~~~~~~~~l~~i~~aD~il~Vvd~~~~----------------~~-v~~v~nk~d~~~ 178 (359)
.+.++.|+||||+.+ +.......+..+|++++|+|+.+. .+ ++.+.||+|...
T Consensus 73 ~~~~i~~iDtPGh~~-------f~~~~~~~~~~aD~~llVvda~~g~~~qt~e~l~~~~~~gi~~iivvvNK~Dl~~ 142 (396)
T PRK12735 73 ANRHYAHVDCPGHAD-------YVKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFLNKCDMVD 142 (396)
T ss_pred CCcEEEEEECCCHHH-------HHHHHHhhhccCCEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEEEecCCcc
Confidence 146799999999843 233556777889999999999763 13 345789999764
No 196
>PLN03127 Elongation factor Tu; Provisional
Probab=99.24 E-value=7e-11 Score=118.16 Aligned_cols=104 Identities=20% Similarity=0.189 Sum_probs=71.4
Q ss_pred ccccCCcEEEEEecCCCChhHHHHHHHhc------cccc---------cCCCCceeccceeEEEEeCCCccchhcccccc
Q 018241 51 SKISMSLRAGIVGLPNVGKSTLFNAVVEN------GKAQ---------AANFPFCTIEPNVGIVAVPDPRLHVLSGLSKS 115 (359)
Q Consensus 51 ~~~~~~~~i~ivG~pn~GKSTL~n~L~~~------~~~~---------~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~ 115 (359)
......++|+++|++++|||||+++|++. .... ..-.++.|++.....+..+
T Consensus 56 ~~~k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~------------- 122 (447)
T PLN03127 56 TRTKPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYETA------------- 122 (447)
T ss_pred hcCCceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEcCC-------------
Confidence 33445689999999999999999999832 1110 1112566766543333222
Q ss_pred ccccCceEEEEecCCCcCCCCcCcchhhhHhhHHHhcccceEEeecCCC----------------cc-EEEeCCcccCCc
Q 018241 116 QKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFED----------------ND-IVHVNGKVDPKS 178 (359)
Q Consensus 116 ~~~~~~~i~lvDtpG~~~~~~~~~~~~~~~l~~i~~aD~il~Vvd~~~~----------------~~-v~~v~nk~d~~~ 178 (359)
+.++.|+||||+.+ +.......+..+|++++|||+.+. .+ ++.++||+|.+.
T Consensus 123 ----~~~i~~iDtPGh~~-------f~~~~~~g~~~aD~allVVda~~g~~~qt~e~l~~~~~~gip~iIvviNKiDlv~ 191 (447)
T PLN03127 123 ----KRHYAHVDCPGHAD-------YVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVVFLNKVDVVD 191 (447)
T ss_pred ----CeEEEEEECCCccc-------hHHHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEEEeeccCC
Confidence 35799999999853 233455566789999999999763 23 467899999875
No 197
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=99.24 E-value=5.5e-11 Score=108.07 Aligned_cols=142 Identities=15% Similarity=-0.015 Sum_probs=87.1
Q ss_pred CCcEEEEEecCCCChhHHHHHHHhcccc-ccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCCcC
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVVENGKA-QAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVK 133 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~~~~~~-~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~~ 133 (359)
..+||++||.+|||||||+++++.+... ...+..+++ ...-.+...+. ...+.+|||||...
T Consensus 12 ~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~--~~~~~~~~~~~---------------~~~l~i~Dt~G~~~ 74 (219)
T PLN03071 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVE--VHPLDFFTNCG---------------KIRFYCWDTAGQEK 74 (219)
T ss_pred CceEEEEECcCCCCHHHHHHHHhhCCCCCccCCcccee--EEEEEEEECCe---------------EEEEEEEECCCchh
Confidence 4589999999999999999998744332 111111111 11111222211 25789999999865
Q ss_pred CCCcCcchhhhHhhHHHhcccceEEeecCCC-------------------ccEEEeCCcccCCcchHHHHhhhhhccHHH
Q 018241 134 GASQGEGLGNKFLSHIREVDSILQVVRCFED-------------------NDIVHVNGKVDPKSDVDVINLELVFSDLDQ 194 (359)
Q Consensus 134 ~~~~~~~~~~~~l~~i~~aD~il~Vvd~~~~-------------------~~v~~v~nk~d~~~~~~~i~~el~~~d~~~ 194 (359)
+.. .....++.+|++|+|+|.++. .+++.+.||.|.... ..... .
T Consensus 75 ~~~-------~~~~~~~~~~~~ilvfD~~~~~s~~~i~~w~~~i~~~~~~~piilvgNK~Dl~~~-~v~~~--------~ 138 (219)
T PLN03071 75 FGG-------LRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNR-QVKAK--------Q 138 (219)
T ss_pred hhh-------hhHHHcccccEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEEchhhhhc-cCCHH--------H
Confidence 432 223346789999999998872 368899999996421 11111 1
Q ss_pred HHHHHHHHhhhccccccchhhHHHHHHHHHHHHHHhcC
Q 018241 195 IEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMD 232 (359)
Q Consensus 195 l~~~~~~~~~~~~~~~~Sa~~~~~~~~ll~~i~~~L~~ 232 (359)
+ .+... .......+||+++.++.++++.+.+.+.+
T Consensus 139 ~--~~~~~-~~~~~~e~SAk~~~~i~~~f~~l~~~~~~ 173 (219)
T PLN03071 139 V--TFHRK-KNLQYYEISAKSNYNFEKPFLYLARKLAG 173 (219)
T ss_pred H--HHHHh-cCCEEEEcCCCCCCCHHHHHHHHHHHHHc
Confidence 1 01110 11111467999999999999888877743
No 198
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.23 E-value=3.9e-11 Score=123.35 Aligned_cols=115 Identities=18% Similarity=0.131 Sum_probs=70.0
Q ss_pred CCcEEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCCCccchhcccc-ccc--cccCceEEEEecCCC
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLS-KSQ--KAVPASVEFVDIAGL 131 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~-~~~--~~~~~~i~lvDtpG~ 131 (359)
+++.|+++|++|+|||||+|+|++.... .....++|++. |...++.......+... ... +....++.||||||.
T Consensus 3 r~piV~IiG~~d~GKTSLln~l~~~~v~-~~e~ggiTq~i--G~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~ 79 (590)
T TIGR00491 3 RSPIVSVLGHVDHGKTTLLDKIRGSAVA-KREAGGITQHI--GATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGH 79 (590)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccccc-cccCCceeccc--CeeEeeeccccccccccccccccccccCcEEEEECCCc
Confidence 3578999999999999999999955332 22233456432 32222211100000000 000 001135899999998
Q ss_pred cCCCCcCcchhhhHhhHHHhcccceEEeecCC----------------CccEEEeCCcccCCcc
Q 018241 132 VKGASQGEGLGNKFLSHIREVDSILQVVRCFE----------------DNDIVHVNGKVDPKSD 179 (359)
Q Consensus 132 ~~~~~~~~~~~~~~l~~i~~aD~il~Vvd~~~----------------~~~v~~v~nk~d~~~~ 179 (359)
..+.. ......+.+|++++|+|+++ +.+++.+.||+|....
T Consensus 80 e~f~~-------l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i~~l~~~~vpiIVv~NK~Dl~~~ 136 (590)
T TIGR00491 80 EAFTN-------LRKRGGALADLAILIVDINEGFKPQTQEALNILRMYKTPFVVAANKIDRIPG 136 (590)
T ss_pred HhHHH-------HHHHHHhhCCEEEEEEECCcCCCHhHHHHHHHHHHcCCCEEEEEECCCccch
Confidence 54432 23345688999999999976 2368899999998753
No 199
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=99.23 E-value=3.9e-11 Score=124.27 Aligned_cols=147 Identities=19% Similarity=0.165 Sum_probs=94.2
Q ss_pred cEEEEEecCCCChhHHHHHHHhccc--cccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCCcCC
Q 018241 57 LRAGIVGLPNVGKSTLFNAVVENGK--AQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (359)
Q Consensus 57 ~~i~ivG~pn~GKSTL~n~L~~~~~--~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~~~ 134 (359)
+-||++|++++|||||+++|+|... .......+.|++.....+..++ +..+.||||||..++
T Consensus 1 ~ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~----------------g~~i~~IDtPGhe~f 64 (614)
T PRK10512 1 MIIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPD----------------GRVLGFIDVPGHEKF 64 (614)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecCC----------------CcEEEEEECCCHHHH
Confidence 3689999999999999999996432 2223345677655444333332 345899999998433
Q ss_pred CCcCcchhhhHhhHHHhcccceEEeecCCCc----------------c-EEEeCCcccCCcchHHHHhhhhhccHHHHHH
Q 018241 135 ASQGEGLGNKFLSHIREVDSILQVVRCFEDN----------------D-IVHVNGKVDPKSDVDVINLELVFSDLDQIEK 197 (359)
Q Consensus 135 ~~~~~~~~~~~l~~i~~aD~il~Vvd~~~~~----------------~-v~~v~nk~d~~~~~~~i~~el~~~d~~~l~~ 197 (359)
.......+..+|++++|||+.+.. + ++.+.||+|.+.+. .+.. . .+.+.+
T Consensus 65 -------i~~m~~g~~~~D~~lLVVda~eg~~~qT~ehl~il~~lgi~~iIVVlNKiDlv~~~-~~~~--v---~~ei~~ 131 (614)
T PRK10512 65 -------LSNMLAGVGGIDHALLVVACDDGVMAQTREHLAILQLTGNPMLTVALTKADRVDEA-RIAE--V---RRQVKA 131 (614)
T ss_pred -------HHHHHHHhhcCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEECCccCCHH-HHHH--H---HHHHHH
Confidence 235567788999999999987631 2 46899999976421 1111 0 111222
Q ss_pred HHHHHhh-hccccccchhhHHHHHHHHHHHHHHhcC
Q 018241 198 RMEKLKK-GKAKDSQSKLKEDAEKAALEKIQQALMD 232 (359)
Q Consensus 198 ~~~~~~~-~~~~~~~Sa~~~~~~~~ll~~i~~~L~~ 232 (359)
.+..... .....++||+++.|+.++++.+.+....
T Consensus 132 ~l~~~~~~~~~ii~VSA~tG~gI~~L~~~L~~~~~~ 167 (614)
T PRK10512 132 VLREYGFAEAKLFVTAATEGRGIDALREHLLQLPER 167 (614)
T ss_pred HHHhcCCCCCcEEEEeCCCCCCCHHHHHHHHHhhcc
Confidence 1111110 0112578999999999999999877654
No 200
>PRK12736 elongation factor Tu; Reviewed
Probab=99.22 E-value=3.1e-11 Score=119.15 Aligned_cols=150 Identities=17% Similarity=0.142 Sum_probs=90.8
Q ss_pred ccCCcEEEEEecCCCChhHHHHHHHhcccc------c---------cCCCCceeccceeEEEEeCCCccchhcccccccc
Q 018241 53 ISMSLRAGIVGLPNVGKSTLFNAVVENGKA------Q---------AANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQK 117 (359)
Q Consensus 53 ~~~~~~i~ivG~pn~GKSTL~n~L~~~~~~------~---------~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~ 117 (359)
....++|+++|++++|||||+++|++.... . ..-..+.|++... ..+..
T Consensus 9 ~k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~--~~~~~-------------- 72 (394)
T PRK12736 9 SKPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAH--VEYET-------------- 72 (394)
T ss_pred CCCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEe--eEecC--------------
Confidence 345689999999999999999999952110 0 0013455654432 22221
Q ss_pred ccCceEEEEecCCCcCCCCcCcchhhhHhhHHHhcccceEEeecCCC----------------cc-EEEeCCcccCCcch
Q 018241 118 AVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFED----------------ND-IVHVNGKVDPKSDV 180 (359)
Q Consensus 118 ~~~~~i~lvDtpG~~~~~~~~~~~~~~~l~~i~~aD~il~Vvd~~~~----------------~~-v~~v~nk~d~~~~~ 180 (359)
.+.++.|+||||..++ .......+..+|++++|+|+.+. .+ ++.+.||+|.+.+.
T Consensus 73 -~~~~i~~iDtPGh~~f-------~~~~~~~~~~~d~~llVvd~~~g~~~~t~~~~~~~~~~g~~~~IvviNK~D~~~~~ 144 (394)
T PRK12736 73 -EKRHYAHVDCPGHADY-------VKNMITGAAQMDGAILVVAATDGPMPQTREHILLARQVGVPYLVVFLNKVDLVDDE 144 (394)
T ss_pred -CCcEEEEEECCCHHHH-------HHHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHHcCCCEEEEEEEecCCcchH
Confidence 1357999999997533 23556677889999999999763 13 56789999976432
Q ss_pred HHHHhhhhhccHHHHHHHHHHHhh---hccccccchhhH--------HHHHHHHHHHHHHhc
Q 018241 181 DVINLELVFSDLDQIEKRMEKLKK---GKAKDSQSKLKE--------DAEKAALEKIQQALM 231 (359)
Q Consensus 181 ~~i~~el~~~d~~~l~~~~~~~~~---~~~~~~~Sa~~~--------~~~~~ll~~i~~~L~ 231 (359)
+. .+++. +.+...+..+.- .....++||..+ .+...+++.+.+.++
T Consensus 145 ~~-~~~i~----~~i~~~l~~~~~~~~~~~ii~vSa~~g~~~~~~~~~~i~~Ll~~l~~~lp 201 (394)
T PRK12736 145 EL-LELVE----MEVRELLSEYDFPGDDIPVIRGSALKALEGDPKWEDAIMELMDAVDEYIP 201 (394)
T ss_pred HH-HHHHH----HHHHHHHHHhCCCcCCccEEEeeccccccCCCcchhhHHHHHHHHHHhCC
Confidence 21 11100 112222222211 111256788776 256788888888775
No 201
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.22 E-value=7.6e-11 Score=103.71 Aligned_cols=146 Identities=12% Similarity=0.101 Sum_probs=84.1
Q ss_pred cEEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCCcCCCC
Q 018241 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGAS 136 (359)
Q Consensus 57 ~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~~~~~ 136 (359)
+||+++|.+|||||||++++.++... ..+..|..+...-.+.+++. ...+.+|||||......
T Consensus 2 ~Kiv~vG~~~vGKTsli~~~~~~~f~--~~~~~t~~~~~~~~~~~~~~---------------~~~l~iwDt~G~~~~~~ 64 (178)
T cd04131 2 CKIVVVGDVQCGKTALLQVFAKDCYP--ETYVPTVFENYTASFEIDEQ---------------RIELSLWDTSGSPYYDN 64 (178)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCcCC--CCcCCceEEEEEEEEEECCE---------------EEEEEEEECCCchhhhh
Confidence 58999999999999999999955432 12222221111112333321 25689999999854432
Q ss_pred cCcchhhhHhhHHHhcccceEEeecCCC--------------------ccEEEeCCcccCCcchHHHHhhhh-----hcc
Q 018241 137 QGEGLGNKFLSHIREVDSILQVVRCFED--------------------NDIVHVNGKVDPKSDVDVINLELV-----FSD 191 (359)
Q Consensus 137 ~~~~~~~~~l~~i~~aD~il~Vvd~~~~--------------------~~v~~v~nk~d~~~~~~~i~~el~-----~~d 191 (359)
.....+++||++++|+|.++. .+++.+.||.|...+...+.. +. ...
T Consensus 65 -------~~~~~~~~a~~~ilvfdit~~~Sf~~~~~~w~~~i~~~~~~~~iilVgnK~DL~~~~~~~~~-~~~~~~~~v~ 136 (178)
T cd04131 65 -------VRPLCYPDSDAVLICFDISRPETLDSVLKKWRGEIQEFCPNTKVLLVGCKTDLRTDLSTLME-LSHQRQAPVS 136 (178)
T ss_pred -------cchhhcCCCCEEEEEEECCChhhHHHHHHHHHHHHHHHCCCCCEEEEEEChhhhcChhHHHH-HHhcCCCCCC
Confidence 112356899999999998762 357889999996543322111 00 011
Q ss_pred HHHHHHHHHHHhhhccccccchhhHHH-HHHHHHHHHH
Q 018241 192 LDQIEKRMEKLKKGKAKDSQSKLKEDA-EKAALEKIQQ 228 (359)
Q Consensus 192 ~~~l~~~~~~~~~~~~~~~~Sa~~~~~-~~~ll~~i~~ 228 (359)
.+..++....... .....+||+++.+ +.+++..+.+
T Consensus 137 ~~e~~~~a~~~~~-~~~~E~SA~~~~~~v~~~F~~~~~ 173 (178)
T cd04131 137 YEQGCAIAKQLGA-EIYLECSAFTSEKSVRDIFHVATM 173 (178)
T ss_pred HHHHHHHHHHhCC-CEEEECccCcCCcCHHHHHHHHHH
Confidence 1111111111110 0114568888885 8888877665
No 202
>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.21 E-value=5.9e-11 Score=102.91 Aligned_cols=141 Identities=22% Similarity=0.226 Sum_probs=93.2
Q ss_pred CCcEEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeE------EEEeCCCccchhccccccccccCceEEEEec
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVG------IVAVPDPRLHVLSGLSKSQKAVPASVEFVDI 128 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g------~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDt 128 (359)
..+||.++|..|||||||+-++..+.... .+.+++| .+.+++. ..++.+|||
T Consensus 4 ~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e-------~~e~TIGaaF~tktv~~~~~---------------~ikfeIWDT 61 (200)
T KOG0092|consen 4 REFKVVLLGDSGVGKSSLVLRFVKDQFHE-------NIEPTIGAAFLTKTVTVDDN---------------TIKFEIWDT 61 (200)
T ss_pred ceEEEEEECCCCCCchhhhhhhhhCcccc-------ccccccccEEEEEEEEeCCc---------------EEEEEEEEc
Confidence 34799999999999999999998444332 1122222 2333332 256889999
Q ss_pred CCCcCCCCcCcchhhhHhhHHHhcccceEEeecCCC------------------cc--EEEeCCcccCCcchHHHHhhhh
Q 018241 129 AGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFED------------------ND--IVHVNGKVDPKSDVDVINLELV 188 (359)
Q Consensus 129 pG~~~~~~~~~~~~~~~l~~i~~aD~il~Vvd~~~~------------------~~--v~~v~nk~d~~~~~~~i~~el~ 188 (359)
+|..++.+ -...+.|+|+++|+|.|..+. ++ +.++.||+|.....+. .
T Consensus 62 AGQERy~s-------lapMYyRgA~AAivvYDit~~~SF~~aK~WvkeL~~~~~~~~vialvGNK~DL~~~R~V-----~ 129 (200)
T KOG0092|consen 62 AGQERYHS-------LAPMYYRGANAAIVVYDITDEESFEKAKNWVKELQRQASPNIVIALVGNKADLLERREV-----E 129 (200)
T ss_pred CCcccccc-------cccceecCCcEEEEEEecccHHHHHHHHHHHHHHHhhCCCCeEEEEecchhhhhhcccc-----c
Confidence 99987655 234566999999999999872 22 4569999997752221 1
Q ss_pred hccHHHHHHHHHHHhhhccccccchhhHHHHHHHHHHHHHHhcCCC
Q 018241 189 FSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMDGK 234 (359)
Q Consensus 189 ~~d~~~l~~~~~~~~~~~~~~~~Sa~~~~~~~~ll~~i~~~L~~~~ 234 (359)
+.+. ...-+. .... .+..|||.+.|+.+++..|.+.++...
T Consensus 130 ~~ea---~~yAe~-~gll-~~ETSAKTg~Nv~~if~~Ia~~lp~~~ 170 (200)
T KOG0092|consen 130 FEEA---QAYAES-QGLL-FFETSAKTGENVNEIFQAIAEKLPCSD 170 (200)
T ss_pred HHHH---HHHHHh-cCCE-EEEEecccccCHHHHHHHHHHhccCcc
Confidence 1121 111111 1111 146799999999999999999997653
No 203
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=99.21 E-value=7.4e-11 Score=99.24 Aligned_cols=128 Identities=17% Similarity=0.176 Sum_probs=81.3
Q ss_pred cEEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCCcCCCC
Q 018241 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGAS 136 (359)
Q Consensus 57 ~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~~~~~ 136 (359)
-||.+||.++||||||+++|.|.... +. -| -.+.+. =.+|||||-.-..
T Consensus 2 krimliG~~g~GKTTL~q~L~~~~~~----~~-KT-----q~i~~~--------------------~~~IDTPGEyiE~- 50 (143)
T PF10662_consen 2 KRIMLIGPSGSGKTTLAQALNGEEIR----YK-KT-----QAIEYY--------------------DNTIDTPGEYIEN- 50 (143)
T ss_pred ceEEEECCCCCCHHHHHHHHcCCCCC----cC-cc-----ceeEec--------------------ccEEECChhheeC-
Confidence 48999999999999999999954331 11 11 112222 1459999964222
Q ss_pred cCcchhhhHhhHHHhcccceEEeecCCC-------------ccEEEeCCcccCCcchHHHHhhhhhccHHHHHHHHHHHh
Q 018241 137 QGEGLGNKFLSHIREVDSILQVVRCFED-------------NDIVHVNGKVDPKSDVDVINLELVFSDLDQIEKRMEKLK 203 (359)
Q Consensus 137 ~~~~~~~~~l~~i~~aD~il~Vvd~~~~-------------~~v~~v~nk~d~~~~~~~i~~el~~~d~~~l~~~~~~~~ 203 (359)
..+.+.......+||+|++|.|+++. .+++.|.+|+|...+...+. ..++.+...-
T Consensus 51 --~~~y~aLi~ta~dad~V~ll~dat~~~~~~pP~fa~~f~~pvIGVITK~Dl~~~~~~i~---------~a~~~L~~aG 119 (143)
T PF10662_consen 51 --PRFYHALIVTAQDADVVLLLQDATEPRSVFPPGFASMFNKPVIGVITKIDLPSDDANIE---------RAKKWLKNAG 119 (143)
T ss_pred --HHHHHHHHHHHhhCCEEEEEecCCCCCccCCchhhcccCCCEEEEEECccCccchhhHH---------HHHHHHHHcC
Confidence 23445666777899999999999884 35888999999773322221 1222222111
Q ss_pred hhccccccchhhHHHHHHHHHHHH
Q 018241 204 KGKAKDSQSKLKEDAEKAALEKIQ 227 (359)
Q Consensus 204 ~~~~~~~~Sa~~~~~~~~ll~~i~ 227 (359)
. .....+|+.++.++.+|.+.+.
T Consensus 120 ~-~~if~vS~~~~eGi~eL~~~L~ 142 (143)
T PF10662_consen 120 V-KEIFEVSAVTGEGIEELKDYLE 142 (143)
T ss_pred C-CCeEEEECCCCcCHHHHHHHHh
Confidence 1 1115678899988877777553
No 204
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=99.20 E-value=1e-10 Score=106.51 Aligned_cols=100 Identities=15% Similarity=0.190 Sum_probs=67.4
Q ss_pred cEEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCCcCCCC
Q 018241 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGAS 136 (359)
Q Consensus 57 ~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~~~~~ 136 (359)
.||++||.+|||||||+++++++... ..+..|..+.....+.+++. ...+.+|||+|......
T Consensus 2 ~KIvvvGd~~vGKTsLi~~~~~~~f~--~~y~pTi~~~~~~~~~~~~~---------------~v~L~iwDt~G~e~~~~ 64 (222)
T cd04173 2 CKIVVVGDAECGKTALLQVFAKDAYP--GSYVPTVFENYTASFEIDKR---------------RIELNMWDTSGSSYYDN 64 (222)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCC--CccCCccccceEEEEEECCE---------------EEEEEEEeCCCcHHHHH
Confidence 58999999999999999999954432 12222322222222333321 24689999999854332
Q ss_pred cCcchhhhHhhHHHhcccceEEeecCCC--------------------ccEEEeCCcccCCcch
Q 018241 137 QGEGLGNKFLSHIREVDSILQVVRCFED--------------------NDIVHVNGKVDPKSDV 180 (359)
Q Consensus 137 ~~~~~~~~~l~~i~~aD~il~Vvd~~~~--------------------~~v~~v~nk~d~~~~~ 180 (359)
.....++++|++++|+|.++. .+++++.||+|...+.
T Consensus 65 -------l~~~~~~~~d~illvfdis~~~Sf~~i~~~w~~~~~~~~~~~piiLVgnK~DL~~~~ 121 (222)
T cd04173 65 -------VRPLAYPDSDAVLICFDISRPETLDSVLKKWQGETQEFCPNAKVVLVGCKLDMRTDL 121 (222)
T ss_pred -------HhHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEECcccccch
Confidence 122346899999999998872 3688999999976554
No 205
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=99.19 E-value=1.4e-11 Score=111.88 Aligned_cols=96 Identities=15% Similarity=0.119 Sum_probs=66.3
Q ss_pred EEEEEecCCCChhHHHHHHHhccccc------------------------------cCCCCceeccceeEEEEeCCCccc
Q 018241 58 RAGIVGLPNVGKSTLFNAVVENGKAQ------------------------------AANFPFCTIEPNVGIVAVPDPRLH 107 (359)
Q Consensus 58 ~i~ivG~pn~GKSTL~n~L~~~~~~~------------------------------~~~~p~tT~~~~~g~~~~~~~r~~ 107 (359)
+|+++|++++|||||+.+|+...... .....++|++.....+...
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~----- 75 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETE----- 75 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeC-----
Confidence 48999999999999999997321110 0012344444444444433
Q ss_pred hhccccccccccCceEEEEecCCCcCCCCcCcchhhhHhhHHHhcccceEEeecCCC-----------------------
Q 018241 108 VLSGLSKSQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFED----------------------- 164 (359)
Q Consensus 108 ~l~~~~~~~~~~~~~i~lvDtpG~~~~~~~~~~~~~~~l~~i~~aD~il~Vvd~~~~----------------------- 164 (359)
+..+.|+||||+.++. ..+...++.+|++++|||+.+.
T Consensus 76 ------------~~~i~liDtpG~~~~~-------~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (219)
T cd01883 76 ------------KYRFTILDAPGHRDFV-------PNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLARTLG 136 (219)
T ss_pred ------------CeEEEEEECCChHHHH-------HHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHHHHHHcC
Confidence 4679999999985432 2566777889999999999762
Q ss_pred -ccEEEeCCcccCC
Q 018241 165 -NDIVHVNGKVDPK 177 (359)
Q Consensus 165 -~~v~~v~nk~d~~ 177 (359)
.+++.+.||+|..
T Consensus 137 ~~~iiivvNK~Dl~ 150 (219)
T cd01883 137 VKQLIVAVNKMDDV 150 (219)
T ss_pred CCeEEEEEEccccc
Confidence 2456788998876
No 206
>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=99.18 E-value=9.3e-11 Score=99.02 Aligned_cols=101 Identities=16% Similarity=0.173 Sum_probs=74.3
Q ss_pred hhccccCCcEEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEec
Q 018241 49 SASKISMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDI 128 (359)
Q Consensus 49 ~~~~~~~~~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDt 128 (359)
+.+...+.++|-|+|+.||||||++++|.+.....+++.-+ .+.-.+.++ ..++.+||.
T Consensus 9 k~k~kerE~riLiLGLdNsGKTti~~kl~~~~~~~i~pt~g----f~Iktl~~~-----------------~~~L~iwDv 67 (185)
T KOG0073|consen 9 KQKLKEREVRILILGLDNSGKTTIVKKLLGEDTDTISPTLG----FQIKTLEYK-----------------GYTLNIWDV 67 (185)
T ss_pred HHHhhhheeEEEEEecCCCCchhHHHHhcCCCccccCCccc----eeeEEEEec-----------------ceEEEEEEc
Confidence 33434457999999999999999999999665444443222 233344455 478999999
Q ss_pred CCCcCCCCcCcchhhhHhhHHHhcccceEEeecCCC---------------------ccEEEeCCcccCC
Q 018241 129 AGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFED---------------------NDIVHVNGKVDPK 177 (359)
Q Consensus 129 pG~~~~~~~~~~~~~~~l~~i~~aD~il~Vvd~~~~---------------------~~v~~v~nk~d~~ 177 (359)
.|.....+ -+.++...+|++++|||.++. .+++.+.||.|..
T Consensus 68 GGq~~lr~-------~W~nYfestdglIwvvDssD~~r~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~ 130 (185)
T KOG0073|consen 68 GGQKTLRS-------YWKNYFESTDGLIWVVDSSDRMRMQECKQELTELLVEERLAGAPLLVLANKQDLP 130 (185)
T ss_pred CCcchhHH-------HHHHhhhccCeEEEEEECchHHHHHHHHHHHHHHHhhhhhcCCceEEEEecCcCc
Confidence 99865443 566778899999999999872 3578888998865
No 207
>COG1161 Predicted GTPases [General function prediction only]
Probab=99.18 E-value=2.9e-11 Score=116.02 Aligned_cols=63 Identities=30% Similarity=0.412 Sum_probs=52.4
Q ss_pred cCCcEEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCCcC
Q 018241 54 SMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVK 133 (359)
Q Consensus 54 ~~~~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~~ 133 (359)
....++++||+||||||||+|+|.|...+.++++||+|+..+.-.+ ...+.++||||++.
T Consensus 130 ~~~~~v~vvG~PNVGKSslIN~L~~k~~~~~s~~PG~Tk~~q~i~~--------------------~~~i~LlDtPGii~ 189 (322)
T COG1161 130 KRKIRVGVVGYPNVGKSTLINRLLGKKVAKTSNRPGTTKGIQWIKL--------------------DDGIYLLDTPGIIP 189 (322)
T ss_pred ccceEEEEEcCCCCcHHHHHHHHhcccceeeCCCCceecceEEEEc--------------------CCCeEEecCCCcCC
Confidence 3457899999999999999999999999999999999976654443 23499999999985
Q ss_pred CCC
Q 018241 134 GAS 136 (359)
Q Consensus 134 ~~~ 136 (359)
...
T Consensus 190 ~~~ 192 (322)
T COG1161 190 PKF 192 (322)
T ss_pred CCc
Confidence 543
No 208
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=99.17 E-value=7.8e-11 Score=111.18 Aligned_cols=85 Identities=24% Similarity=0.352 Sum_probs=61.9
Q ss_pred CCcEEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCCcCC
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~~~ 134 (359)
..++|+++|.+|+||||++|+|+|...+.++.++.+|..+........ +.++.+|||||+.+.
T Consensus 37 ~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s~t~~~~~~~~~~~-----------------G~~l~VIDTPGL~d~ 99 (313)
T TIGR00991 37 SSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMMVSRTRA-----------------GFTLNIIDTPGLIEG 99 (313)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEEC-----------------CeEEEEEECCCCCch
Confidence 458999999999999999999998887778888777665554433333 467999999999865
Q ss_pred CCcCcchhhhHhhHHH------hcccceEEee
Q 018241 135 ASQGEGLGNKFLSHIR------EVDSILQVVR 160 (359)
Q Consensus 135 ~~~~~~~~~~~l~~i~------~aD~il~Vvd 160 (359)
... .......++ ..|++++|.+
T Consensus 100 ~~~----~e~~~~~ik~~l~~~g~DvVLyV~r 127 (313)
T TIGR00991 100 GYI----NDQAVNIIKRFLLGKTIDVLLYVDR 127 (313)
T ss_pred HHH----HHHHHHHHHHHhhcCCCCEEEEEec
Confidence 321 222233332 5899999954
No 209
>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.17 E-value=3.7e-10 Score=93.92 Aligned_cols=143 Identities=17% Similarity=0.137 Sum_probs=94.4
Q ss_pred CcEEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCCcCCC
Q 018241 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA 135 (359)
Q Consensus 56 ~~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~~~~ 135 (359)
-+||++||..|+|||.|+.++| +...+++.-+..-.+-....+.+.+++ .++++|||+|..++.
T Consensus 7 lfkivlvgnagvgktclvrrft-qglfppgqgatigvdfmiktvev~gek---------------iklqiwdtagqerfr 70 (213)
T KOG0095|consen 7 LFKIVLVGNAGVGKTCLVRRFT-QGLFPPGQGATIGVDFMIKTVEVNGEK---------------IKLQIWDTAGQERFR 70 (213)
T ss_pred eEEEEEEccCCcCcchhhhhhh-ccCCCCCCCceeeeeEEEEEEEECCeE---------------EEEEEeeccchHHHH
Confidence 3799999999999999999999 544443322212223344445565543 568999999997766
Q ss_pred CcCcchhhhHhhHHHhcccceEEeecCCCcc--------------------EEEeCCcccCCcchHHHHhhhhhccHHHH
Q 018241 136 SQGEGLGNKFLSHIREVDSILQVVRCFEDND--------------------IVHVNGKVDPKSDVDVINLELVFSDLDQI 195 (359)
Q Consensus 136 ~~~~~~~~~~l~~i~~aD~il~Vvd~~~~~~--------------------v~~v~nk~d~~~~~~~i~~el~~~d~~~l 195 (359)
+ -+-+..|.|+++++|.|.+-.+. -+.|.||+|.-+..+.-.. +
T Consensus 71 s-------itqsyyrsahalilvydiscqpsfdclpewlreie~yan~kvlkilvgnk~d~~drrevp~q---------i 134 (213)
T KOG0095|consen 71 S-------ITQSYYRSAHALILVYDISCQPSFDCLPEWLREIEQYANNKVLKILVGNKIDLADRREVPQQ---------I 134 (213)
T ss_pred H-------HHHHHhhhcceEEEEEecccCcchhhhHHHHHHHHHHhhcceEEEeeccccchhhhhhhhHH---------H
Confidence 5 55677789999999999876432 3678899986543322111 1
Q ss_pred HHHHHHHhhhccccccchhhHHHHHHHHHHHHHHhc
Q 018241 196 EKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALM 231 (359)
Q Consensus 196 ~~~~~~~~~~~~~~~~Sa~~~~~~~~ll~~i~~~L~ 231 (359)
.+......... ....||++..|++.++..+...|-
T Consensus 135 geefs~~qdmy-fletsakea~nve~lf~~~a~rli 169 (213)
T KOG0095|consen 135 GEEFSEAQDMY-FLETSAKEADNVEKLFLDLACRLI 169 (213)
T ss_pred HHHHHHhhhhh-hhhhcccchhhHHHHHHHHHHHHH
Confidence 11121111111 135688999999999988887774
No 210
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=99.17 E-value=1.6e-10 Score=102.04 Aligned_cols=148 Identities=14% Similarity=0.127 Sum_probs=86.2
Q ss_pred CcEEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCCcCCC
Q 018241 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA 135 (359)
Q Consensus 56 ~~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~~~~ 135 (359)
.+||+++|.++||||||++++.++... ..+..|..+...-.+.+++. ...+.+|||+|.....
T Consensus 5 ~~KivvvGd~~vGKTsli~~~~~~~f~--~~~~pT~~~~~~~~~~~~~~---------------~~~l~iwDtaG~e~~~ 67 (182)
T cd04172 5 KCKIVVVGDSQCGKTALLHVFAKDCFP--ENYVPTVFENYTASFEIDTQ---------------RIELSLWDTSGSPYYD 67 (182)
T ss_pred eEEEEEECCCCCCHHHHHHHHHhCCCC--CccCCceeeeeEEEEEECCE---------------EEEEEEEECCCchhhH
Confidence 479999999999999999999954432 12222221111112233321 2468999999985443
Q ss_pred CcCcchhhhHhhHHHhcccceEEeecCCC--------------------ccEEEeCCcccCCcchHHHHhhhh-----hc
Q 018241 136 SQGEGLGNKFLSHIREVDSILQVVRCFED--------------------NDIVHVNGKVDPKSDVDVINLELV-----FS 190 (359)
Q Consensus 136 ~~~~~~~~~~l~~i~~aD~il~Vvd~~~~--------------------~~v~~v~nk~d~~~~~~~i~~el~-----~~ 190 (359)
. .....+++||++++|+|.++. .+++.+.||.|...+...+.. +. ..
T Consensus 68 ~-------~~~~~~~~ad~~ilvyDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~~~~~~~~~-~~~~~~~~v 139 (182)
T cd04172 68 N-------VRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDLTTLVE-LSNHRQTPV 139 (182)
T ss_pred h-------hhhhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEeEChhhhcChhhHHH-HHhcCCCCC
Confidence 2 223456899999999998772 357889999996543222111 00 01
Q ss_pred cHHHHHHHHHHHhhhccccccchhhHHH-HHHHHHHHHHH
Q 018241 191 DLDQIEKRMEKLKKGKAKDSQSKLKEDA-EKAALEKIQQA 229 (359)
Q Consensus 191 d~~~l~~~~~~~~~~~~~~~~Sa~~~~~-~~~ll~~i~~~ 229 (359)
..+..++....... .....+||+++.+ +.+++..+.+.
T Consensus 140 ~~~~~~~~a~~~~~-~~~~E~SAk~~~n~v~~~F~~~~~~ 178 (182)
T cd04172 140 SYDQGANMAKQIGA-ATYIECSALQSENSVRDIFHVATLA 178 (182)
T ss_pred CHHHHHHHHHHcCC-CEEEECCcCCCCCCHHHHHHHHHHH
Confidence 11111111111110 0114578999987 88888776653
No 211
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.17 E-value=1.5e-10 Score=106.02 Aligned_cols=151 Identities=13% Similarity=0.122 Sum_probs=88.1
Q ss_pred CCcEEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCCcCC
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~~~ 134 (359)
...||+++|.++||||||+++++++... ..+..|......-.+.+.+. ...+.||||||...+
T Consensus 12 ~~~KIvvvGd~~VGKTsLi~r~~~~~F~--~~y~pTi~~~~~~~i~~~~~---------------~v~l~iwDTaG~e~~ 74 (232)
T cd04174 12 MRCKLVLVGDVQCGKTAMLQVLAKDCYP--ETYVPTVFENYTAGLETEEQ---------------RVELSLWDTSGSPYY 74 (232)
T ss_pred eeEEEEEECCCCCcHHHHHHHHhcCCCC--CCcCCceeeeeEEEEEECCE---------------EEEEEEEeCCCchhh
Confidence 4579999999999999999999954332 12222221111112223221 256999999997543
Q ss_pred CCcCcchhhhHhhHHHhcccceEEeecCCC--------------------ccEEEeCCcccCCcchHHHHhhhh-----h
Q 018241 135 ASQGEGLGNKFLSHIREVDSILQVVRCFED--------------------NDIVHVNGKVDPKSDVDVINLELV-----F 189 (359)
Q Consensus 135 ~~~~~~~~~~~l~~i~~aD~il~Vvd~~~~--------------------~~v~~v~nk~d~~~~~~~i~~el~-----~ 189 (359)
.. .....+++||++++|+|+++. .+++.|.||.|...+...+. ++. .
T Consensus 75 ~~-------~~~~~~~~ad~vIlVyDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~~~~~~~~-~l~~~~~~~ 146 (232)
T cd04174 75 DN-------VRPLCYSDSDAVLLCFDISRPETVDSALKKWKAEIMDYCPSTRILLIGCKTDLRTDLSTLM-ELSNQKQAP 146 (232)
T ss_pred HH-------HHHHHcCCCcEEEEEEECCChHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccchhh-hhccccCCc
Confidence 32 223467899999999998762 35788999999644322111 000 0
Q ss_pred ccHHHHHHHHHHHhhhccccccchhhHH-HHHHHHHHHHHHhc
Q 018241 190 SDLDQIEKRMEKLKKGKAKDSQSKLKED-AEKAALEKIQQALM 231 (359)
Q Consensus 190 ~d~~~l~~~~~~~~~~~~~~~~Sa~~~~-~~~~ll~~i~~~L~ 231 (359)
...+..+....... ......+||+++. ++.+++..+.....
T Consensus 147 Vs~~e~~~~a~~~~-~~~~~EtSAktg~~~V~e~F~~~~~~~~ 188 (232)
T cd04174 147 ISYEQGCALAKQLG-AEVYLECSAFTSEKSIHSIFRSASLLCL 188 (232)
T ss_pred CCHHHHHHHHHHcC-CCEEEEccCCcCCcCHHHHHHHHHHHHH
Confidence 11111122111111 1011457999987 79998888776653
No 212
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=99.16 E-value=7.4e-11 Score=123.23 Aligned_cols=117 Identities=15% Similarity=0.035 Sum_probs=73.9
Q ss_pred CCcEEEEEecCCCChhHHHHHHHhccccccC----------CCCceeccceeEEEEeCCC---cc--chhcccccccccc
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAA----------NFPFCTIEPNVGIVAVPDP---RL--HVLSGLSKSQKAV 119 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~~~~~~~~~----------~~p~tT~~~~~g~~~~~~~---r~--~~l~~~~~~~~~~ 119 (359)
..++|+|+|++|+|||||+|+|+....+..+ ..+++|+++..-.+..+.. +. .-+.-.+....+.
T Consensus 23 ~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~~~~ 102 (632)
T PRK05506 23 SLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYFATP 102 (632)
T ss_pred CeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEEccC
Confidence 4578999999999999999999965544432 2456665543322211110 00 0000111222233
Q ss_pred CceEEEEecCCCcCCCCcCcchhhhHhhHHHhcccceEEeecCCC-----------------ccEEEeCCcccCCc
Q 018241 120 PASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFED-----------------NDIVHVNGKVDPKS 178 (359)
Q Consensus 120 ~~~i~lvDtpG~~~~~~~~~~~~~~~l~~i~~aD~il~Vvd~~~~-----------------~~v~~v~nk~d~~~ 178 (359)
+.++.|+||||..++ .......+..+|++++|||+.+. .+++.++||+|.+.
T Consensus 103 ~~~~~liDtPG~~~f-------~~~~~~~~~~aD~~llVvda~~g~~~~t~e~~~~~~~~~~~~iivvvNK~D~~~ 171 (632)
T PRK05506 103 KRKFIVADTPGHEQY-------TRNMVTGASTADLAIILVDARKGVLTQTRRHSFIASLLGIRHVVLAVNKMDLVD 171 (632)
T ss_pred CceEEEEECCChHHH-------HHHHHHHHHhCCEEEEEEECCCCccccCHHHHHHHHHhCCCeEEEEEEeccccc
Confidence 568999999997532 22445567899999999999652 24677899999764
No 213
>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.16 E-value=1.3e-10 Score=101.06 Aligned_cols=145 Identities=16% Similarity=0.124 Sum_probs=96.9
Q ss_pred CCcEEEEEecCCCChhHHHHHHHhccccccCCCCcee--ccceeEEEEeCCCccchhccccccccccCceEEEEecCCCc
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCT--IEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLV 132 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT--~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~ 132 (359)
..+||.|+|-.|||||.|+.++.+..... +. .+| +|-....+.+.+++ ..+++|||+|..
T Consensus 8 ylFKiiliGds~VGKtCL~~Rf~~~~f~e-~~--~sTIGVDf~~rt~e~~gk~---------------iKlQIWDTAGQE 69 (205)
T KOG0084|consen 8 YLFKIILIGDSGVGKTCLLLRFKDDTFTE-SY--ISTIGVDFKIRTVELDGKT---------------IKLQIWDTAGQE 69 (205)
T ss_pred eEEEEEEECCCCcChhhhhhhhccCCcch-hh--cceeeeEEEEEEeeecceE---------------EEEEeeeccccH
Confidence 45899999999999999999999544332 11 122 22333344444433 479999999997
Q ss_pred CCCCcCcchhhhHhhHHHhcccceEEeecCC--------------------CccEEEeCCcccCCcchHHHHhhhhhccH
Q 018241 133 KGASQGEGLGNKFLSHIREVDSILQVVRCFE--------------------DNDIVHVNGKVDPKSDVDVINLELVFSDL 192 (359)
Q Consensus 133 ~~~~~~~~~~~~~l~~i~~aD~il~Vvd~~~--------------------~~~v~~v~nk~d~~~~~~~i~~el~~~d~ 192 (359)
++.. .+.+..|+|++||+|.|.++ ..+.+.|.||+|..+......+|
T Consensus 70 RFrt-------it~syYR~ahGii~vyDiT~~~SF~~v~~Wi~Ei~~~~~~~v~~lLVGNK~Dl~~~~~v~~~~------ 136 (205)
T KOG0084|consen 70 RFRT-------ITSSYYRGAHGIIFVYDITKQESFNNVKRWIQEIDRYASENVPKLLVGNKCDLTEKRVVSTEE------ 136 (205)
T ss_pred HHhh-------hhHhhccCCCeEEEEEEcccHHHhhhHHHHHHHhhhhccCCCCeEEEeeccccHhheecCHHH------
Confidence 6654 67888999999999999877 22578899999977544332221
Q ss_pred HHHHHHHHHHhhhccccccchhhHHHHHHHHHHHHHHhcCC
Q 018241 193 DQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMDG 233 (359)
Q Consensus 193 ~~l~~~~~~~~~~~~~~~~Sa~~~~~~~~ll~~i~~~L~~~ 233 (359)
.++........ .....||+...|+++.+..+...|...
T Consensus 137 --a~~fa~~~~~~-~f~ETSAK~~~NVe~~F~~la~~lk~~ 174 (205)
T KOG0084|consen 137 --AQEFADELGIP-IFLETSAKDSTNVEDAFLTLAKELKQR 174 (205)
T ss_pred --HHHHHHhcCCc-ceeecccCCccCHHHHHHHHHHHHHHh
Confidence 11111111111 014578999999999888888777553
No 214
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=99.16 E-value=4.8e-11 Score=124.04 Aligned_cols=235 Identities=15% Similarity=0.111 Sum_probs=132.9
Q ss_pred CCcEEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCCCccchhcc----------cccccccc-CceE
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSG----------LSKSQKAV-PASV 123 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~----------~~~~~~~~-~~~i 123 (359)
.-.+|||+|+-.+|||||..+|+ -....++. .|.+..++...|+..+ ...+.-|. +..|
T Consensus 9 ~~RNigI~aHidaGKTTltE~lL-~~tG~i~k---------~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~~~~i 78 (697)
T COG0480 9 RIRNIGIVAHIDAGKTTLTERIL-FYTGIISK---------IGEVHDGAATMDWMEQEQERGITITSAATTLFWKGDYRI 78 (697)
T ss_pred cceEEEEEeccCCChHHHHHHHH-HHcCCcCC---------CccccCCCccCCCcHHHHhcCCEEeeeeeEEEEcCceEE
Confidence 44689999999999999999998 32222221 2222222222333211 11122333 3789
Q ss_pred EEEecCCCcCCCCcCcchhhhHhhHHHhcccceEEeecCCCccEEEeCCcccCCcchHHHHhhhhhccHHHHHHHHHHHh
Q 018241 124 EFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPKSDVDVINLELVFSDLDQIEKRMEKLK 203 (359)
Q Consensus 124 ~lvDtpG~~~~~~~~~~~~~~~l~~i~~aD~il~Vvd~~~~~~v~~v~nk~d~~~~~~~i~~el~~~d~~~l~~~~~~~~ 203 (359)
+|+||||.+++.. ....+++-+|.++.|+|+.+. + ..++|..|..+.....+.-.+.
T Consensus 79 NlIDTPGHVDFt~-------EV~rslrvlDgavvVvdaveG------------V----~~QTEtv~rqa~~~~vp~i~fi 135 (697)
T COG0480 79 NLIDTPGHVDFTI-------EVERSLRVLDGAVVVVDAVEG------------V----EPQTETVWRQADKYGVPRILFV 135 (697)
T ss_pred EEeCCCCccccHH-------HHHHHHHhhcceEEEEECCCC------------e----eecHHHHHHHHhhcCCCeEEEE
Confidence 9999999999887 788899999999999999543 2 1122222222221111222222
Q ss_pred hhccccccchhhHHHHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHH-HHhhhhcCCeEEEE-eCCC-cccCCCCCChhH
Q 018241 204 KGKAKDSQSKLKEDAEKAALEKIQQALMDGKPARSVTLNDFERDSIK-QLCLLTMKPIIYVA-NVAE-SDLADPGSNPHV 280 (359)
Q Consensus 204 ~~~~~~~~Sa~~~~~~~~ll~~i~~~L~~~~~~~~~~~t~~~~e~i~-~~~~l~~kp~~y~~-nv~~-~~~~~~~~~~~~ 280 (359)
++++ +.+.++....+.+...|. .+..+.+++....+.+. .+++...+.+.|-. .... .++| ....
T Consensus 136 NKmD------R~~a~~~~~~~~l~~~l~--~~~~~v~~pIg~~~~f~g~idl~~~~~~~~~~~~~~~~~~ip----~~~~ 203 (697)
T COG0480 136 NKMD------RLGADFYLVVEQLKERLG--ANPVPVQLPIGAEEEFEGVIDLVEMKAVAFGDGAKYEWIEIP----ADLK 203 (697)
T ss_pred ECcc------ccccChhhhHHHHHHHhC--CCceeeeccccCccccCceeEhhhcCeEEEcCCcccceeeCC----HHHH
Confidence 2333 334455566666666663 22222222222122223 24455566655541 1110 1112 1122
Q ss_pred HHHHHHHHhcCCeEEEeeHHHHHHHcCCCHHHHHHHHHHcCCCCchHHHHHHHHHHhcCCeEEec
Q 018241 281 NEVMNLASDLQSGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFT 345 (359)
Q Consensus 281 ~~i~~~~~~~~~~~i~~sa~le~~l~~l~~~~~~~~l~~~~~~~~~l~~li~~~~~~L~li~ffT 345 (359)
+..+++.. .+.+.+.+.+++.++.||++..++...+.+.|+.......+.+++.
T Consensus 204 ~~~~e~r~-----------~~~e~i~e~de~l~e~yl~g~e~~~~~i~~~i~~~~~~~~~~pvl~ 257 (697)
T COG0480 204 EIAEEARE-----------KLLEALAEFDEELMEKYLEGEEPTEEEIKKALRKGTIAGKIVPVLC 257 (697)
T ss_pred hHHHHHHH-----------HHHHHHhhcCHHHHHHHhcCCCccHHHHHHHHHHhhhccceeeEEe
Confidence 22223322 2677788888888999999988888888888888887777887775
No 215
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=99.15 E-value=7.2e-11 Score=101.37 Aligned_cols=58 Identities=29% Similarity=0.513 Sum_probs=49.4
Q ss_pred cCCcEEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCC
Q 018241 54 SMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGL 131 (359)
Q Consensus 54 ~~~~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~ 131 (359)
....+++++|.||+|||||+|+|++.....+++.|+||++...... +..+.++||||+
T Consensus 98 ~~~~~~~~~G~~~~GKstlin~l~~~~~~~~~~~~~~t~~~~~~~~--------------------~~~~~liDtPG~ 155 (155)
T cd01849 98 KKSITVGVIGYPNVGKSSVINALLNKLKLKVGNVPGTTTSQQEVKL--------------------DNKIKLLDTPGI 155 (155)
T ss_pred ccCcEEEEEccCCCCHHHHHHHHHccccccccCCCCcccceEEEEe--------------------cCCEEEEECCCC
Confidence 4568999999999999999999998777889999999988876543 235999999996
No 216
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=99.15 E-value=7e-11 Score=111.80 Aligned_cols=62 Identities=32% Similarity=0.471 Sum_probs=51.4
Q ss_pred cCCcEEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCCcC
Q 018241 54 SMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVK 133 (359)
Q Consensus 54 ~~~~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~~ 133 (359)
...++|+++|.||||||||+|+|++...+.+++.||+|++... +.++ .++.++||||+..
T Consensus 119 ~~~~~~~~~G~pnvGKSsliN~l~~~~~~~~~~~~g~T~~~~~--~~~~------------------~~~~l~DtPGi~~ 178 (287)
T PRK09563 119 PRAIRAMIIGIPNVGKSTLINRLAGKKIAKTGNRPGVTKAQQW--IKLG------------------KGLELLDTPGILW 178 (287)
T ss_pred cCceEEEEECCCCCCHHHHHHHHhcCCccccCCCCCeEEEEEE--EEeC------------------CcEEEEECCCcCC
Confidence 3457999999999999999999998888899999999987643 3332 3599999999975
Q ss_pred CC
Q 018241 134 GA 135 (359)
Q Consensus 134 ~~ 135 (359)
+.
T Consensus 179 ~~ 180 (287)
T PRK09563 179 PK 180 (287)
T ss_pred CC
Confidence 54
No 217
>PRK04004 translation initiation factor IF-2; Validated
Probab=99.15 E-value=2.6e-10 Score=117.56 Aligned_cols=114 Identities=22% Similarity=0.189 Sum_probs=67.8
Q ss_pred CCcEEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCCCccchhcc-ccc--cccccCceEEEEecCCC
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSG-LSK--SQKAVPASVEFVDIAGL 131 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~-~~~--~~~~~~~~i~lvDtpG~ 131 (359)
+++.|+++|++|+|||||+|+|++...+ .....+.| ...|...++......... ... +.+..-..+.||||||.
T Consensus 5 R~p~V~i~Gh~~~GKTSLl~~l~~~~v~-~~~~g~it--q~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~ 81 (586)
T PRK04004 5 RQPIVVVLGHVDHGKTTLLDKIRGTAVA-AKEAGGIT--QHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGH 81 (586)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCcccc-cCCCCceE--EeeceeeccccccccccceeccccccccccCCEEEEECCCh
Confidence 4678999999999999999999954322 22222334 222322222110000000 000 00000113799999998
Q ss_pred cCCCCcCcchhhhHhhHHHhcccceEEeecCC----------------CccEEEeCCcccCCc
Q 018241 132 VKGASQGEGLGNKFLSHIREVDSILQVVRCFE----------------DNDIVHVNGKVDPKS 178 (359)
Q Consensus 132 ~~~~~~~~~~~~~~l~~i~~aD~il~Vvd~~~----------------~~~v~~v~nk~d~~~ 178 (359)
..+.. .....++.+|++++|+|+.+ ..+++.+.||+|...
T Consensus 82 e~f~~-------~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~~~~~~~vpiIvviNK~D~~~ 137 (586)
T PRK04004 82 EAFTN-------LRKRGGALADIAILVVDINEGFQPQTIEAINILKRRKTPFVVAANKIDRIP 137 (586)
T ss_pred HHHHH-------HHHHhHhhCCEEEEEEECCCCCCHhHHHHHHHHHHcCCCEEEEEECcCCch
Confidence 65533 22345678999999999986 246788999999753
No 218
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=99.14 E-value=3.4e-10 Score=100.02 Aligned_cols=150 Identities=17% Similarity=0.125 Sum_probs=86.1
Q ss_pred cEEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCCcCCCC
Q 018241 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGAS 136 (359)
Q Consensus 57 ~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~~~~~ 136 (359)
.||+++|.+|+|||||+++++.+.... .+..++.+.....+...+. ...+.+|||||......
T Consensus 2 ~Ki~ivG~~g~GKStLl~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~---------------~~~l~i~Dt~g~~~~~~ 64 (187)
T cd04129 2 RKLVIVGDGACGKTSLLSVFTLGEFPE--EYHPTVFENYVTDCRVDGK---------------PVQLALWDTAGQEEYER 64 (187)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCc--ccCCcccceEEEEEEECCE---------------EEEEEEEECCCChhccc
Confidence 489999999999999999998443321 1211222222233333221 24588999999854432
Q ss_pred cCcchhhhHhhHHHhcccceEEeecCC--------------------CccEEEeCCcccCCcchHHHHhh--hhhccHHH
Q 018241 137 QGEGLGNKFLSHIREVDSILQVVRCFE--------------------DNDIVHVNGKVDPKSDVDVINLE--LVFSDLDQ 194 (359)
Q Consensus 137 ~~~~~~~~~l~~i~~aD~il~Vvd~~~--------------------~~~v~~v~nk~d~~~~~~~i~~e--l~~~d~~~ 194 (359)
.. ...++++|++++|+|..+ +.+++.+.||+|...+....... -.....+.
T Consensus 65 ~~-------~~~~~~a~~~llv~~i~~~~s~~~~~~~~~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~ 137 (187)
T cd04129 65 LR-------PLSYSKAHVILIGFAVDTPDSLENVRTKWIEEVRRYCPNVPVILVGLKKDLRQDAVAKEEYRTQRFVPIQQ 137 (187)
T ss_pred cc-------hhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhhhCcccccccccCCcCCHHH
Confidence 11 124578999999998765 23578899999964321110000 00111111
Q ss_pred HHHHHHHHhhhccccccchhhHHHHHHHHHHHHHHhc
Q 018241 195 IEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALM 231 (359)
Q Consensus 195 l~~~~~~~~~~~~~~~~Sa~~~~~~~~ll~~i~~~L~ 231 (359)
.......+ .......+||+++.++.++++.+.+.+.
T Consensus 138 ~~~~~~~~-~~~~~~e~Sa~~~~~v~~~f~~l~~~~~ 173 (187)
T cd04129 138 GKRVAKEI-GAKKYMECSALTGEGVDDVFEAATRAAL 173 (187)
T ss_pred HHHHHHHh-CCcEEEEccCCCCCCHHHHHHHHHHHHh
Confidence 11111111 1111146799999999999998887663
No 219
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.14 E-value=1.4e-10 Score=114.44 Aligned_cols=101 Identities=22% Similarity=0.209 Sum_probs=69.0
Q ss_pred CCcEEEEEecCCCChhHHHHHHHhc------ccccc---------CCCCceeccceeEEEEeCCCccchhcccccccccc
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVVEN------GKAQA---------ANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAV 119 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~~~------~~~~~---------~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~ 119 (359)
..++|+++|++++|||||+++|++. ..... .-..+.|++.... .+.. .
T Consensus 11 ~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~--~~~~---------------~ 73 (394)
T TIGR00485 11 PHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHV--EYET---------------E 73 (394)
T ss_pred ceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEE--EEcC---------------C
Confidence 4589999999999999999999842 11110 1125666654332 2221 1
Q ss_pred CceEEEEecCCCcCCCCcCcchhhhHhhHHHhcccceEEeecCCCc----------------c-EEEeCCcccCCcc
Q 018241 120 PASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDN----------------D-IVHVNGKVDPKSD 179 (359)
Q Consensus 120 ~~~i~lvDtpG~~~~~~~~~~~~~~~l~~i~~aD~il~Vvd~~~~~----------------~-v~~v~nk~d~~~~ 179 (359)
+.++.||||||..++. ......+..+|++++|+|+.+.. + ++.+.||+|.+.+
T Consensus 74 ~~~~~liDtpGh~~f~-------~~~~~~~~~~D~~ilVvda~~g~~~qt~e~l~~~~~~gi~~iIvvvNK~Dl~~~ 143 (394)
T TIGR00485 74 NRHYAHVDCPGHADYV-------KNMITGAAQMDGAILVVSATDGPMPQTREHILLARQVGVPYIVVFLNKCDMVDD 143 (394)
T ss_pred CEEEEEEECCchHHHH-------HHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEEecccCCH
Confidence 3579999999986433 35566778899999999997731 2 4467999997743
No 220
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=99.14 E-value=5.2e-10 Score=101.22 Aligned_cols=90 Identities=20% Similarity=0.155 Sum_probs=57.7
Q ss_pred cEEEEEecCCCChhHHHHHHHhccccccC-CCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCCcCCC
Q 018241 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAA-NFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA 135 (359)
Q Consensus 57 ~~i~ivG~pn~GKSTL~n~L~~~~~~~~~-~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~~~~ 135 (359)
++|.++|.+|+||||+.|.|+|......+ ....+|.........+. +..+.++||||+.+..
T Consensus 1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~~-----------------g~~v~VIDTPGl~d~~ 63 (212)
T PF04548_consen 1 LRILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEVD-----------------GRQVTVIDTPGLFDSD 63 (212)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEET-----------------TEEEEEEE--SSEETT
T ss_pred CEEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeeec-----------------ceEEEEEeCCCCCCCc
Confidence 47999999999999999999988776654 23456767766666555 4679999999997655
Q ss_pred CcCcchhhhHhh----HHHhcccceEEeecCC
Q 018241 136 SQGEGLGNKFLS----HIREVDSILQVVRCFE 163 (359)
Q Consensus 136 ~~~~~~~~~~l~----~i~~aD~il~Vvd~~~ 163 (359)
...+.+...... .....|++++|++...
T Consensus 64 ~~~~~~~~~i~~~l~~~~~g~ha~llVi~~~r 95 (212)
T PF04548_consen 64 GSDEEIIREIKRCLSLCSPGPHAFLLVIPLGR 95 (212)
T ss_dssp EEHHHHHHHHHHHHHHTTT-ESEEEEEEETTB
T ss_pred ccHHHHHHHHHHHHHhccCCCeEEEEEEecCc
Confidence 433323322322 2245799999998753
No 221
>PLN03126 Elongation factor Tu; Provisional
Probab=99.14 E-value=2e-10 Score=115.64 Aligned_cols=102 Identities=18% Similarity=0.135 Sum_probs=69.1
Q ss_pred ccCCcEEEEEecCCCChhHHHHHHHhccccccC---------------CCCceeccceeEEEEeCCCccchhcccccccc
Q 018241 53 ISMSLRAGIVGLPNVGKSTLFNAVVENGKAQAA---------------NFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQK 117 (359)
Q Consensus 53 ~~~~~~i~ivG~pn~GKSTL~n~L~~~~~~~~~---------------~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~ 117 (359)
....++|+++|++++|||||+++|++......+ ...+.|++.....+..
T Consensus 78 ~k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~---------------- 141 (478)
T PLN03126 78 KKPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYET---------------- 141 (478)
T ss_pred cCCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEec----------------
Confidence 345589999999999999999999953221111 1122333222222211
Q ss_pred ccCceEEEEecCCCcCCCCcCcchhhhHhhHHHhcccceEEeecCCCc----------------c-EEEeCCcccCCc
Q 018241 118 AVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDN----------------D-IVHVNGKVDPKS 178 (359)
Q Consensus 118 ~~~~~i~lvDtpG~~~~~~~~~~~~~~~l~~i~~aD~il~Vvd~~~~~----------------~-v~~v~nk~d~~~ 178 (359)
.+.++.|+||||..++. ......+..+|++++|||+.+.. + ++.+.||+|.+.
T Consensus 142 -~~~~i~liDtPGh~~f~-------~~~~~g~~~aD~ailVVda~~G~~~qt~e~~~~~~~~gi~~iIvvvNK~Dl~~ 211 (478)
T PLN03126 142 -ENRHYAHVDCPGHADYV-------KNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQVD 211 (478)
T ss_pred -CCcEEEEEECCCHHHHH-------HHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEecccccC
Confidence 14579999999986533 25567778899999999998642 3 567899999874
No 222
>PRK00049 elongation factor Tu; Reviewed
Probab=99.13 E-value=1.1e-10 Score=115.37 Aligned_cols=100 Identities=18% Similarity=0.149 Sum_probs=68.7
Q ss_pred CCcEEEEEecCCCChhHHHHHHHhcccc------c---------cCCCCceeccceeEEEEeCCCccchhcccccccccc
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVVENGKA------Q---------AANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAV 119 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~~~~~~------~---------~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~ 119 (359)
..++|+++|++++|||||+++|++.... . ..-..+.|++.....+...
T Consensus 11 ~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~----------------- 73 (396)
T PRK00049 11 PHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYETE----------------- 73 (396)
T ss_pred CEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcCC-----------------
Confidence 4589999999999999999999952110 0 0114556655443222211
Q ss_pred CceEEEEecCCCcCCCCcCcchhhhHhhHHHhcccceEEeecCCC----------------ccE-EEeCCcccCCc
Q 018241 120 PASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFED----------------NDI-VHVNGKVDPKS 178 (359)
Q Consensus 120 ~~~i~lvDtpG~~~~~~~~~~~~~~~l~~i~~aD~il~Vvd~~~~----------------~~v-~~v~nk~d~~~ 178 (359)
+.++.|+||||+.+ +.......+..+|++++|+|+.+. .+. +.+.||+|...
T Consensus 74 ~~~i~~iDtPG~~~-------f~~~~~~~~~~aD~~llVVDa~~g~~~qt~~~~~~~~~~g~p~iiVvvNK~D~~~ 142 (396)
T PRK00049 74 KRHYAHVDCPGHAD-------YVKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFLNKCDMVD 142 (396)
T ss_pred CeEEEEEECCCHHH-------HHHHHHhhhccCCEEEEEEECCCCCchHHHHHHHHHHHcCCCEEEEEEeecCCcc
Confidence 46799999999853 333556667899999999999763 233 35789999874
No 223
>PRK05433 GTP-binding protein LepA; Provisional
Probab=99.13 E-value=3.1e-10 Score=117.36 Aligned_cols=146 Identities=18% Similarity=0.145 Sum_probs=91.8
Q ss_pred cEEEEEecCCCChhHHHHHHHhccccccC--------C------CCceeccceeEEEEeCCCccchhccccccccccCce
Q 018241 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAA--------N------FPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPAS 122 (359)
Q Consensus 57 ~~i~ivG~pn~GKSTL~n~L~~~~~~~~~--------~------~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~ 122 (359)
.+|+|+|+.++|||||+++|+........ + .-+.|.......+.+. .......+
T Consensus 8 RNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~------------~~dg~~~~ 75 (600)
T PRK05433 8 RNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYK------------AKDGETYI 75 (600)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEE------------ccCCCcEE
Confidence 58999999999999999999843211100 0 1133333322222221 00111357
Q ss_pred EEEEecCCCcCCCCcCcchhhhHhhHHHhcccceEEeecCCC----------------ccEEEeCCcccCCcc-hHHHHh
Q 018241 123 VEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFED----------------NDIVHVNGKVDPKSD-VDVINL 185 (359)
Q Consensus 123 i~lvDtpG~~~~~~~~~~~~~~~l~~i~~aD~il~Vvd~~~~----------------~~v~~v~nk~d~~~~-~~~i~~ 185 (359)
+.||||||+.++.. .+...++.||++++|+|+++. .+++.+.||+|.... .+.+..
T Consensus 76 lnLiDTPGh~dF~~-------~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~~~~~lpiIvViNKiDl~~a~~~~v~~ 148 (600)
T PRK05433 76 LNLIDTPGHVDFSY-------EVSRSLAACEGALLVVDASQGVEAQTLANVYLALENDLEIIPVLNKIDLPAADPERVKQ 148 (600)
T ss_pred EEEEECCCcHHHHH-------HHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCcccHHHHHH
Confidence 99999999987644 456678899999999999873 257889999996431 221111
Q ss_pred hhhhccHHHHHHHHHHHhhh-ccccccchhhHHHHHHHHHHHHHHhcC
Q 018241 186 ELVFSDLDQIEKRMEKLKKG-KAKDSQSKLKEDAEKAALEKIQQALMD 232 (359)
Q Consensus 186 el~~~d~~~l~~~~~~~~~~-~~~~~~Sa~~~~~~~~ll~~i~~~L~~ 232 (359)
+ +... +... .....+||+.+.++.++++.+.+.++.
T Consensus 149 e--------i~~~---lg~~~~~vi~iSAktG~GI~~Ll~~I~~~lp~ 185 (600)
T PRK05433 149 E--------IEDV---IGIDASDAVLVSAKTGIGIEEVLEAIVERIPP 185 (600)
T ss_pred H--------HHHH---hCCCcceEEEEecCCCCCHHHHHHHHHHhCcc
Confidence 1 1111 1000 011467999999999999999998864
No 224
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=99.13 E-value=1.1e-10 Score=117.69 Aligned_cols=121 Identities=15% Similarity=0.053 Sum_probs=70.2
Q ss_pred ccccCCcEEEEEecCCCChhHHHHHHHhccccccCC----------CCceeccceeEEEEeC---CCc--cchhcccccc
Q 018241 51 SKISMSLRAGIVGLPNVGKSTLFNAVVENGKAQAAN----------FPFCTIEPNVGIVAVP---DPR--LHVLSGLSKS 115 (359)
Q Consensus 51 ~~~~~~~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~----------~p~tT~~~~~g~~~~~---~~r--~~~l~~~~~~ 115 (359)
.+....++|+++|++++|||||+++|+......... ..++|.+.....+..+ .+| -.-+.-.+..
T Consensus 22 ~~~~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~ 101 (474)
T PRK05124 22 QQHKSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRY 101 (474)
T ss_pred ccccCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEE
Confidence 334566999999999999999999998443322111 1233311100000000 000 0000001111
Q ss_pred ccccCceEEEEecCCCcCCCCcCcchhhhHhhHHHhcccceEEeecCCC-----------------ccEEEeCCcccCCc
Q 018241 116 QKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFED-----------------NDIVHVNGKVDPKS 178 (359)
Q Consensus 116 ~~~~~~~i~lvDtpG~~~~~~~~~~~~~~~l~~i~~aD~il~Vvd~~~~-----------------~~v~~v~nk~d~~~ 178 (359)
..+.+.++.|+||||..+ +.......++.+|++++|||+.+. .+++.++||+|.+.
T Consensus 102 ~~~~~~~i~~iDTPGh~~-------f~~~~~~~l~~aD~allVVDa~~G~~~qt~~~~~l~~~lg~~~iIvvvNKiD~~~ 174 (474)
T PRK05124 102 FSTEKRKFIIADTPGHEQ-------YTRNMATGASTCDLAILLIDARKGVLDQTRRHSFIATLLGIKHLVVAVNKMDLVD 174 (474)
T ss_pred eccCCcEEEEEECCCcHH-------HHHHHHHHHhhCCEEEEEEECCCCccccchHHHHHHHHhCCCceEEEEEeecccc
Confidence 122356899999999642 333455567999999999999763 24677999999873
No 225
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.12 E-value=2e-10 Score=95.08 Aligned_cols=95 Identities=22% Similarity=0.244 Sum_probs=61.8
Q ss_pred EEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCCcCCCCcCcc
Q 018241 61 IVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGASQGEG 140 (359)
Q Consensus 61 ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~~~~~~~~~ 140 (359)
++|.+|+|||||+|++++..... .....+..+........+.. ...+.+|||||......
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~~-~~~~~t~~~~~~~~~~~~~~---------------~~~~~l~D~~g~~~~~~---- 60 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFVP-EEYETTIIDFYSKTIEVDGK---------------KVKLQIWDTAGQERFRS---- 60 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcCC-cccccchhheeeEEEEECCE---------------EEEEEEEecCChHHHHh----
Confidence 58999999999999999554421 22222222233322322110 35699999999865433
Q ss_pred hhhhHhhHHHhcccceEEeecCCC---------------------ccEEEeCCcccCCc
Q 018241 141 LGNKFLSHIREVDSILQVVRCFED---------------------NDIVHVNGKVDPKS 178 (359)
Q Consensus 141 ~~~~~l~~i~~aD~il~Vvd~~~~---------------------~~v~~v~nk~d~~~ 178 (359)
.....++.+|++++|+|+++. .+++.+.||+|...
T Consensus 61 ---~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~ 116 (157)
T cd00882 61 ---LRRLYYRGADGIILVYDVTDRESFENVKEWLLLILINKEGENIPIILVGNKIDLPE 116 (157)
T ss_pred ---HHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhhccCCCcEEEEEecccccc
Confidence 225566889999999998773 24677888888653
No 226
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=99.12 E-value=1.1e-10 Score=116.38 Aligned_cols=100 Identities=18% Similarity=0.145 Sum_probs=69.3
Q ss_pred CCcEEEEEecCCCChhHHHHHHHhcccccc------------------------------CCCCceeccceeEEEEeCCC
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQA------------------------------ANFPFCTIEPNVGIVAVPDP 104 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~~~~~~~~------------------------------~~~p~tT~~~~~g~~~~~~~ 104 (359)
..++|+++|++++|||||+++|+....... ....+.|++.....+..+
T Consensus 6 ~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~~-- 83 (426)
T TIGR00483 6 EHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFETD-- 83 (426)
T ss_pred ceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEccC--
Confidence 458999999999999999999984211110 012355555554444333
Q ss_pred ccchhccccccccccCceEEEEecCCCcCCCCcCcchhhhHhhHHHhcccceEEeecCCC--------------------
Q 018241 105 RLHVLSGLSKSQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFED-------------------- 164 (359)
Q Consensus 105 r~~~l~~~~~~~~~~~~~i~lvDtpG~~~~~~~~~~~~~~~l~~i~~aD~il~Vvd~~~~-------------------- 164 (359)
..++.||||||..++ ...+...++.+|++++|+|+++.
T Consensus 84 ---------------~~~i~iiDtpGh~~f-------~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~~~~~~ 141 (426)
T TIGR00483 84 ---------------KYEVTIVDCPGHRDF-------IKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLARTLGI 141 (426)
T ss_pred ---------------CeEEEEEECCCHHHH-------HHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHHHHcCC
Confidence 467999999997432 23455667899999999999764
Q ss_pred ccEEEeCCcccCCc
Q 018241 165 NDIVHVNGKVDPKS 178 (359)
Q Consensus 165 ~~v~~v~nk~d~~~ 178 (359)
.+++.+.||+|...
T Consensus 142 ~~iIVviNK~Dl~~ 155 (426)
T TIGR00483 142 NQLIVAINKMDSVN 155 (426)
T ss_pred CeEEEEEEChhccC
Confidence 13567899999763
No 227
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=99.11 E-value=4.2e-10 Score=116.11 Aligned_cols=143 Identities=19% Similarity=0.132 Sum_probs=90.1
Q ss_pred EEEEEecCCCChhHHHHHHHhccccccCC---------------CCceeccceeEEEEeCCCccchhccccccccccCce
Q 018241 58 RAGIVGLPNVGKSTLFNAVVENGKAQAAN---------------FPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPAS 122 (359)
Q Consensus 58 ~i~ivG~pn~GKSTL~n~L~~~~~~~~~~---------------~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~ 122 (359)
+|+|+|+.++|||||+++|+......... .-+.|+......+.+ .+.+
T Consensus 3 NIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~-----------------~~~k 65 (594)
T TIGR01394 3 NIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRY-----------------NGTK 65 (594)
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEE-----------------CCEE
Confidence 79999999999999999999432211110 112333332222332 2568
Q ss_pred EEEEecCCCcCCCCcCcchhhhHhhHHHhcccceEEeecCCC----------------ccEEEeCCcccCCc-chHHHHh
Q 018241 123 VEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFED----------------NDIVHVNGKVDPKS-DVDVINL 185 (359)
Q Consensus 123 i~lvDtpG~~~~~~~~~~~~~~~l~~i~~aD~il~Vvd~~~~----------------~~v~~v~nk~d~~~-~~~~i~~ 185 (359)
+.||||||..++.. .....++.+|++++|||+++. .+++.+.||+|... +...+.+
T Consensus 66 inlIDTPGh~DF~~-------ev~~~l~~aD~alLVVDa~~G~~~qT~~~l~~a~~~~ip~IVviNKiD~~~a~~~~v~~ 138 (594)
T TIGR01394 66 INIVDTPGHADFGG-------EVERVLGMVDGVLLLVDASEGPMPQTRFVLKKALELGLKPIVVINKIDRPSARPDEVVD 138 (594)
T ss_pred EEEEECCCHHHHHH-------HHHHHHHhCCEEEEEEeCCCCCcHHHHHHHHHHHHCCCCEEEEEECCCCCCcCHHHHHH
Confidence 99999999976543 566778999999999999863 25788999999653 2333322
Q ss_pred hhhhccHHHHHHHHHHHh---h--hccccccchhhHH----------HHHHHHHHHHHHhcC
Q 018241 186 ELVFSDLDQIEKRMEKLK---K--GKAKDSQSKLKED----------AEKAALEKIQQALMD 232 (359)
Q Consensus 186 el~~~d~~~l~~~~~~~~---~--~~~~~~~Sa~~~~----------~~~~ll~~i~~~L~~ 232 (359)
++. ..+..+. . .......||+.+. ++..+++.+.++++.
T Consensus 139 ei~--------~l~~~~g~~~e~l~~pvl~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~lP~ 192 (594)
T TIGR01394 139 EVF--------DLFAELGADDEQLDFPIVYASGRAGWASLDLDDPSDNMAPLFDAIVRHVPA 192 (594)
T ss_pred HHH--------HHHHhhccccccccCcEEechhhcCcccccCcccccCHHHHHHHHHHhCCC
Confidence 211 1111000 0 0111355777775 688899999999864
No 228
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=99.11 E-value=3.6e-10 Score=109.41 Aligned_cols=113 Identities=19% Similarity=0.182 Sum_probs=82.0
Q ss_pred cCCcEEEEEecCCCChhHHHHHHHhc----ccc-----------ccCCCCc---eecccee---EEEEeCCCccchhccc
Q 018241 54 SMSLRAGIVGLPNVGKSTLFNAVVEN----GKA-----------QAANFPF---CTIEPNV---GIVAVPDPRLHVLSGL 112 (359)
Q Consensus 54 ~~~~~i~ivG~pn~GKSTL~n~L~~~----~~~-----------~~~~~p~---tT~~~~~---g~~~~~~~r~~~l~~~ 112 (359)
...+.||++|+-|+|||||+|++++. ..+ .+++.+| +|.+|.. -.+.+..
T Consensus 15 ~G~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~--------- 85 (492)
T TIGR02836 15 QGDIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEINI--------- 85 (492)
T ss_pred CCcEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEec---------
Confidence 45589999999999999999999977 566 6889999 8878765 3333321
Q ss_pred cccccccCceEEEEecCCCcCCCCcCcchhhh----------------------HhhHHH-hcccceEEe-ecC------
Q 018241 113 SKSQKAVPASVEFVDIAGLVKGASQGEGLGNK----------------------FLSHIR-EVDSILQVV-RCF------ 162 (359)
Q Consensus 113 ~~~~~~~~~~i~lvDtpG~~~~~~~~~~~~~~----------------------~l~~i~-~aD~il~Vv-d~~------ 162 (359)
.......+.|+||+|+......|..-... +...+. ++|..++|. |++
T Consensus 86 ---~~~~~~~VrlIDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI~R 162 (492)
T TIGR02836 86 ---NEGTKFKVRLVDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDIPR 162 (492)
T ss_pred ---cCCCcccEEEEECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCcccccc
Confidence 11113579999999996544433322233 456677 899999999 885
Q ss_pred C----------------CccEEEeCCcccCCc
Q 018241 163 E----------------DNDIVHVNGKVDPKS 178 (359)
Q Consensus 163 ~----------------~~~v~~v~nk~d~~~ 178 (359)
+ +.|++.++|+.||..
T Consensus 163 e~y~~aEe~~i~eLk~~~kPfiivlN~~dp~~ 194 (492)
T TIGR02836 163 EDYVEAEERVIEELKELNKPFIILLNSTHPYH 194 (492)
T ss_pred ccchHHHHHHHHHHHhcCCCEEEEEECcCCCC
Confidence 1 346899999999874
No 229
>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]
Probab=99.11 E-value=4.3e-11 Score=99.24 Aligned_cols=140 Identities=19% Similarity=0.186 Sum_probs=92.0
Q ss_pred CCcEEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCCcCC
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~~~ 134 (359)
..|.+.++|..|+|||||+|.+..+... .+...|+-.+...++-+ ...+.+||.||...+
T Consensus 19 ~emel~lvGLq~sGKtt~Vn~ia~g~~~---edmiptvGfnmrk~tkg-----------------nvtiklwD~gGq~rf 78 (186)
T KOG0075|consen 19 EEMELSLVGLQNSGKTTLVNVIARGQYL---EDMIPTVGFNMRKVTKG-----------------NVTIKLWDLGGQPRF 78 (186)
T ss_pred heeeEEEEeeccCCcceEEEEEeeccch---hhhcccccceeEEeccC-----------------ceEEEEEecCCCccH
Confidence 4578999999999999999998733332 12223333444444433 367999999999877
Q ss_pred CCcCcchhhhHhhHHHhcccceEEeecCCCc---------------------cEEEeCCcccCCcchH--HHHhhhhhcc
Q 018241 135 ASQGEGLGNKFLSHIREVDSILQVVRCFEDN---------------------DIVHVNGKVDPKSDVD--VINLELVFSD 191 (359)
Q Consensus 135 ~~~~~~~~~~~l~~i~~aD~il~Vvd~~~~~---------------------~v~~v~nk~d~~~~~~--~i~~el~~~d 191 (359)
.+ .+....|.+|+|+||||+++.. |+....||.|...... .+-.++-+.+
T Consensus 79 rs-------mWerycR~v~aivY~VDaad~~k~~~sr~EL~~LL~k~~l~gip~LVLGnK~d~~~AL~~~~li~rmgL~s 151 (186)
T KOG0075|consen 79 RS-------MWERYCRGVSAIVYVVDAADPDKLEASRSELHDLLDKPSLTGIPLLVLGNKIDLPGALSKIALIERMGLSS 151 (186)
T ss_pred HH-------HHHHHhhcCcEEEEEeecCCcccchhhHHHHHHHhcchhhcCCcEEEecccccCcccccHHHHHHHhCccc
Confidence 66 6777889999999999999843 4566778887553322 2222233333
Q ss_pred HHHHHHHHHHHhhhccccccchhhHHHHHHHHHHHHHHh
Q 018241 192 LDQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQAL 230 (359)
Q Consensus 192 ~~~l~~~~~~~~~~~~~~~~Sa~~~~~~~~ll~~i~~~L 230 (359)
+..-|- . =..+|+++..|++.+++-+.++-
T Consensus 152 itdREv--------c-C~siScke~~Nid~~~~Wli~hs 181 (186)
T KOG0075|consen 152 ITDREV--------C-CFSISCKEKVNIDITLDWLIEHS 181 (186)
T ss_pred cccceE--------E-EEEEEEcCCccHHHHHHHHHHHh
Confidence 211000 0 04678999889888888777664
No 230
>PRK10218 GTP-binding protein; Provisional
Probab=99.10 E-value=7e-10 Score=114.50 Aligned_cols=147 Identities=17% Similarity=0.119 Sum_probs=90.5
Q ss_pred cEEEEEecCCCChhHHHHHHHhccccccCC---------------CCceeccceeEEEEeCCCccchhccccccccccCc
Q 018241 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAAN---------------FPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPA 121 (359)
Q Consensus 57 ~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~---------------~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~ 121 (359)
.+|+|+|+.++|||||+++|+......... ..+.|+......+.+ .+.
T Consensus 6 RnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~-----------------~~~ 68 (607)
T PRK10218 6 RNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKW-----------------NDY 68 (607)
T ss_pred eEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEec-----------------CCE
Confidence 589999999999999999999532221111 122333332222222 256
Q ss_pred eEEEEecCCCcCCCCcCcchhhhHhhHHHhcccceEEeecCCC----------------ccEEEeCCcccCCc-chHHHH
Q 018241 122 SVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFED----------------NDIVHVNGKVDPKS-DVDVIN 184 (359)
Q Consensus 122 ~i~lvDtpG~~~~~~~~~~~~~~~l~~i~~aD~il~Vvd~~~~----------------~~v~~v~nk~d~~~-~~~~i~ 184 (359)
++.+|||||..++.. .+...++.+|++++|+|+.+. .+.+.+.||+|... +...+.
T Consensus 69 ~inliDTPG~~df~~-------~v~~~l~~aDg~ILVVDa~~G~~~qt~~~l~~a~~~gip~IVviNKiD~~~a~~~~vl 141 (607)
T PRK10218 69 RINIVDTPGHADFGG-------EVERVMSMVDSVLLVVDAFDGPMPQTRFVTKKAFAYGLKPIVVINKVDRPGARPDWVV 141 (607)
T ss_pred EEEEEECCCcchhHH-------HHHHHHHhCCEEEEEEecccCccHHHHHHHHHHHHcCCCEEEEEECcCCCCCchhHHH
Confidence 899999999976654 556778999999999999874 24678999999642 222222
Q ss_pred hhhhhccHHHHHHHHHHHhh--hccccccchhhHH----------HHHHHHHHHHHHhcC
Q 018241 185 LELVFSDLDQIEKRMEKLKK--GKAKDSQSKLKED----------AEKAALEKIQQALMD 232 (359)
Q Consensus 185 ~el~~~d~~~l~~~~~~~~~--~~~~~~~Sa~~~~----------~~~~ll~~i~~~L~~ 232 (359)
.++.-. + ..+..... .......||..+. ++..+++.+..++|.
T Consensus 142 ~ei~~l----~-~~l~~~~~~~~~PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~iP~ 196 (607)
T PRK10218 142 DQVFDL----F-VNLDATDEQLDFPIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHVPA 196 (607)
T ss_pred HHHHHH----H-hccCccccccCCCEEEeEhhcCcccCCccccccchHHHHHHHHHhCCC
Confidence 211100 0 00000000 0111456777776 477899999999863
No 231
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=99.10 E-value=3.1e-10 Score=98.19 Aligned_cols=101 Identities=23% Similarity=0.233 Sum_probs=61.0
Q ss_pred EEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCCC---------------c---cchhc----------
Q 018241 59 AGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDP---------------R---LHVLS---------- 110 (359)
Q Consensus 59 i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~~---------------r---~~~l~---------- 110 (359)
|+++|..++|||||+|+|+|....+++.-| ||.-++.-...-... . +..+.
T Consensus 1 V~v~G~~ssGKSTliNaLlG~~ilp~~~~~-~T~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (168)
T PF00350_consen 1 VAVVGQFSSGKSTLINALLGRPILPSGVGP-CTAVPTEISYGDEPEIEHEEAIIEFKDGSEEFEELNELREQIDEEFDSI 79 (168)
T ss_dssp EEEEEBTTSSHHHHHHHHHTSS-SSSSSSS-TTSSEEEEEEEESSSCCTSEEEECEEEETEEBCCHHHHHHHHHHHHHHH
T ss_pred CEEEcCCCCCHHHHHHHHHhcccCcccccc-cccceeEEEecccCccccccccccccccccchhhHHHHHHhhhcccccc
Confidence 789999999999999999987766655554 554343222211100 0 00000
Q ss_pred -----------cccccccccCceEEEEecCCCcCCCCcCcchhhhHhhHHHhcccceEEeecCC
Q 018241 111 -----------GLSKSQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFE 163 (359)
Q Consensus 111 -----------~~~~~~~~~~~~i~lvDtpG~~~~~~~~~~~~~~~l~~i~~aD~il~Vvd~~~ 163 (359)
..+.........+.|+||||+........ ..+...+..+|++++|+++..
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~lvDtPG~~~~~~~~~---~~~~~~~~~~d~vi~V~~~~~ 140 (168)
T PF00350_consen 80 EGKLEQISSKVIVISISSPLLRNLTLVDTPGLNSTNSEHT---EITEEYLPKADVVIFVVDANQ 140 (168)
T ss_dssp HTSSS-S-SSEEEEEEEETTSCSEEEEEEEEBHSSHTTTS---HHHHHHHSTTEEEEEEEETTS
T ss_pred cccccccccceeEEeeccccccceEEEeCCccccchhhhH---HHHHHhhccCCEEEEEeccCc
Confidence 01111122244699999999976433222 345666689999999999854
No 232
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=99.10 E-value=5.1e-10 Score=96.43 Aligned_cols=135 Identities=16% Similarity=0.062 Sum_probs=80.6
Q ss_pred cEEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCCcCCCC
Q 018241 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGAS 136 (359)
Q Consensus 57 ~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~~~~~ 136 (359)
+||+++|.+|||||||+++++.+.... .++ +|.......+.+++. ...+.+|||+|...
T Consensus 1 ~ki~vvG~~gvGKTsli~~~~~~~f~~--~~~-~~~~~~~~~i~~~~~---------------~~~l~i~D~~g~~~--- 59 (158)
T cd04103 1 LKLGIVGNLQSGKSALVHRYLTGSYVQ--LES-PEGGRFKKEVLVDGQ---------------SHLLLIRDEGGAPD--- 59 (158)
T ss_pred CEEEEECCCCCcHHHHHHHHHhCCCCC--CCC-CCccceEEEEEECCE---------------EEEEEEEECCCCCc---
Confidence 489999999999999999987443322 122 121111223334321 24589999999942
Q ss_pred cCcchhhhHhhHHHhcccceEEeecCCC---------------------ccEEEeCCcccCCcc-hHHHHhhhhhccHHH
Q 018241 137 QGEGLGNKFLSHIREVDSILQVVRCFED---------------------NDIVHVNGKVDPKSD-VDVINLELVFSDLDQ 194 (359)
Q Consensus 137 ~~~~~~~~~l~~i~~aD~il~Vvd~~~~---------------------~~v~~v~nk~d~~~~-~~~i~~el~~~d~~~ 194 (359)
....+.+|++++|+|.++. .+++++.||.|.... ...+..+ .
T Consensus 60 ---------~~~~~~~~~~ilv~d~~~~~sf~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~~~v~~~-------~ 123 (158)
T cd04103 60 ---------AQFASWVDAVIFVFSLENEASFQTVYNLYHQLSSYRNISEIPLILVGTQDAISESNPRVIDDA-------R 123 (158)
T ss_pred ---------hhHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeeHHHhhhcCCcccCHH-------H
Confidence 1234679999999998762 357889999885321 1111111 0
Q ss_pred HHHHHHHHhhhccccccchhhHHHHHHHHHHHHHH
Q 018241 195 IEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQA 229 (359)
Q Consensus 195 l~~~~~~~~~~~~~~~~Sa~~~~~~~~ll~~i~~~ 229 (359)
. +.+.+-........+||+.+.|+.++++.+.+.
T Consensus 124 ~-~~~~~~~~~~~~~e~SAk~~~~i~~~f~~~~~~ 157 (158)
T cd04103 124 A-RQLCADMKRCSYYETCATYGLNVERVFQEAAQK 157 (158)
T ss_pred H-HHHHHHhCCCcEEEEecCCCCCHHHHHHHHHhh
Confidence 1 111110001112467999999999999887654
No 233
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=99.09 E-value=1.6e-10 Score=108.76 Aligned_cols=61 Identities=34% Similarity=0.481 Sum_probs=50.6
Q ss_pred CCcEEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCCcCC
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~~~ 134 (359)
...+|+++|.||||||||+|+|++...+.+++.||+|+.... +.+. ..+.++||||+...
T Consensus 117 ~~~~~~~vG~~nvGKSslin~l~~~~~~~~~~~~g~T~~~~~--~~~~------------------~~~~l~DtPG~~~~ 176 (276)
T TIGR03596 117 RPIRAMIVGIPNVGKSTLINRLAGKKVAKVGNRPGVTKGQQW--IKLS------------------DGLELLDTPGILWP 176 (276)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeecceEE--EEeC------------------CCEEEEECCCcccC
Confidence 458999999999999999999998888899999999987653 3332 24899999999755
Q ss_pred C
Q 018241 135 A 135 (359)
Q Consensus 135 ~ 135 (359)
.
T Consensus 177 ~ 177 (276)
T TIGR03596 177 K 177 (276)
T ss_pred C
Confidence 3
No 234
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=99.09 E-value=5e-10 Score=95.92 Aligned_cols=139 Identities=20% Similarity=0.254 Sum_probs=87.1
Q ss_pred EEEEEecCCCChhHHHHHHHhccccccCCCCcee-ccceeEEEEeCCCccchhccccccccccCceEEEEecCCCcCCCC
Q 018241 58 RAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCT-IEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGAS 136 (359)
Q Consensus 58 ~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT-~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~~~~~ 136 (359)
||+++|.++||||||++++.++... . .+..|. .+.....+.+.+. ...+.+||++|......
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~~~-~-~~~~t~~~~~~~~~~~~~~~---------------~~~l~i~D~~g~~~~~~ 63 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGEFP-E-NYIPTIGIDSYSKEVSIDGK---------------PVNLEIWDTSGQERFDS 63 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSTT-S-SSETTSSEEEEEEEEEETTE---------------EEEEEEEEETTSGGGHH
T ss_pred CEEEECCCCCCHHHHHHHHHhhccc-c-cccccccccccccccccccc---------------ccccccccccccccccc
Confidence 7999999999999999999955432 2 222121 2333334444322 35799999999743221
Q ss_pred cCcchhhhHhhHHHhcccceEEeecCC--------------------CccEEEeCCcccCCcchHHHHhhhhhccHHHHH
Q 018241 137 QGEGLGNKFLSHIREVDSILQVVRCFE--------------------DNDIVHVNGKVDPKSDVDVINLELVFSDLDQIE 196 (359)
Q Consensus 137 ~~~~~~~~~l~~i~~aD~il~Vvd~~~--------------------~~~v~~v~nk~d~~~~~~~i~~el~~~d~~~l~ 196 (359)
.....++++|++++|.|..+ +.+++.+.+|.|....... . .+..+
T Consensus 64 -------~~~~~~~~~~~~ii~fd~~~~~S~~~~~~~~~~i~~~~~~~~~iivvg~K~D~~~~~~v-----~---~~~~~ 128 (162)
T PF00071_consen 64 -------LRDIFYRNSDAIIIVFDVTDEESFENLKKWLEEIQKYKPEDIPIIVVGNKSDLSDEREV-----S---VEEAQ 128 (162)
T ss_dssp -------HHHHHHTTESEEEEEEETTBHHHHHTHHHHHHHHHHHSTTTSEEEEEEETTTGGGGSSS-----C---HHHHH
T ss_pred -------cccccccccccccccccccccccccccccccccccccccccccceeeeccccccccccc-----h---hhHHH
Confidence 22345688999999999876 2467888899986641111 1 11112
Q ss_pred HHHHHHhhhccccccchhhHHHHHHHHHHHHHHh
Q 018241 197 KRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQAL 230 (359)
Q Consensus 197 ~~~~~~~~~~~~~~~Sa~~~~~~~~ll~~i~~~L 230 (359)
....... .....+|++.+.++.+++..+.+.+
T Consensus 129 ~~~~~~~--~~~~e~Sa~~~~~v~~~f~~~i~~i 160 (162)
T PF00071_consen 129 EFAKELG--VPYFEVSAKNGENVKEIFQELIRKI 160 (162)
T ss_dssp HHHHHTT--SEEEEEBTTTTTTHHHHHHHHHHHH
T ss_pred HHHHHhC--CEEEEEECCCCCCHHHHHHHHHHHH
Confidence 2122221 1114678899999999988887765
No 235
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=99.08 E-value=2.2e-10 Score=93.27 Aligned_cols=82 Identities=18% Similarity=0.251 Sum_probs=49.8
Q ss_pred EEEEEecCCCChhHHHHHHHhcccc---ccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCCcCC
Q 018241 58 RAGIVGLPNVGKSTLFNAVVENGKA---QAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (359)
Q Consensus 58 ~i~ivG~pn~GKSTL~n~L~~~~~~---~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~~~ 134 (359)
||.++|.+|||||||+++|.+.... ........+.... ....... ...+.++|++|....
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~---------------~~~~~~~d~~g~~~~ 63 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVD--VIVVDGD---------------RQSLQFWDFGGQEEF 63 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEE--EEEETTE---------------EEEEEEEEESSSHCH
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEE--EEEecCC---------------ceEEEEEecCcccee
Confidence 7899999999999999999966554 1111112221111 1112111 124889999999543
Q ss_pred CCcCcchhhhHhhHHHhcccceEEeecCC
Q 018241 135 ASQGEGLGNKFLSHIREVDSILQVVRCFE 163 (359)
Q Consensus 135 ~~~~~~~~~~~l~~i~~aD~il~Vvd~~~ 163 (359)
.. .....+..+|++++|+|+++
T Consensus 64 ~~-------~~~~~~~~~d~~ilv~D~s~ 85 (119)
T PF08477_consen 64 YS-------QHQFFLKKADAVILVYDLSD 85 (119)
T ss_dssp HC-------TSHHHHHHSCEEEEEEECCG
T ss_pred cc-------cccchhhcCcEEEEEEcCCC
Confidence 32 11122788999999999854
No 236
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=99.07 E-value=1.7e-10 Score=102.44 Aligned_cols=57 Identities=26% Similarity=0.306 Sum_probs=46.3
Q ss_pred CCcEEEEEecCCCChhHHHHHHHhcc--------ccccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEE
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVVENG--------KAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFV 126 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~~~~--------~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lv 126 (359)
...+++++|.||||||||+|+|.+.. .+.++..||||+++....+. ..+.++
T Consensus 126 ~~~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~--------------------~~~~~~ 185 (190)
T cd01855 126 KGGDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPGTTLDLIKIPLG--------------------NGKKLY 185 (190)
T ss_pred cCCcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCCCeeeeeEEEecC--------------------CCCEEE
Confidence 34689999999999999999999643 35688999999888765541 248999
Q ss_pred ecCCC
Q 018241 127 DIAGL 131 (359)
Q Consensus 127 DtpG~ 131 (359)
||||+
T Consensus 186 DtPG~ 190 (190)
T cd01855 186 DTPGI 190 (190)
T ss_pred eCcCC
Confidence 99996
No 237
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.07 E-value=3.1e-09 Score=96.03 Aligned_cols=147 Identities=18% Similarity=0.096 Sum_probs=84.9
Q ss_pred CCcEEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCCcCC
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~~~ 134 (359)
..+||+++|.+|||||||++++..+... . .+ ..|.........+.. . .....+.+|||||....
T Consensus 8 ~~~kv~liG~~g~GKTtLi~~~~~~~~~-~-~~-~~t~~~~~~~~~~~~----------~---~~~i~i~~~Dt~g~~~~ 71 (215)
T PTZ00132 8 PEFKLILVGDGGVGKTTFVKRHLTGEFE-K-KY-IPTLGVEVHPLKFYT----------N---CGPICFNVWDTAGQEKF 71 (215)
T ss_pred CCceEEEECCCCCCHHHHHHHHHhCCCC-C-CC-CCccceEEEEEEEEE----------C---CeEEEEEEEECCCchhh
Confidence 4489999999999999999866523321 1 11 123222222221110 0 00356899999997543
Q ss_pred CCcCcchhhhHhhHHHhcccceEEeecCC-------------------CccEEEeCCcccCCcchHHHHhhhhhccHHHH
Q 018241 135 ASQGEGLGNKFLSHIREVDSILQVVRCFE-------------------DNDIVHVNGKVDPKSDVDVINLELVFSDLDQI 195 (359)
Q Consensus 135 ~~~~~~~~~~~l~~i~~aD~il~Vvd~~~-------------------~~~v~~v~nk~d~~~~~~~i~~el~~~d~~~l 195 (359)
.. ......+.+|++++|+|.++ +.+++.+.||.|..... .... ..
T Consensus 72 ~~-------~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~i~lv~nK~Dl~~~~-~~~~--------~~ 135 (215)
T PTZ00132 72 GG-------LRDGYYIKGQCAIIMFDVTSRITYKNVPNWHRDIVRVCENIPIVLVGNKVDVKDRQ-VKAR--------QI 135 (215)
T ss_pred hh-------hhHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccCcccc-CCHH--------HH
Confidence 22 22344568999999999874 34567788999864311 1001 00
Q ss_pred HHHHHHHhhhccccccchhhHHHHHHHHHHHHHHhcCCCCC
Q 018241 196 EKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMDGKPA 236 (359)
Q Consensus 196 ~~~~~~~~~~~~~~~~Sa~~~~~~~~ll~~i~~~L~~~~~~ 236 (359)
. ...... ......|++.+.++.+.+..+.+.+...+.+
T Consensus 136 -~-~~~~~~-~~~~e~Sa~~~~~v~~~f~~ia~~l~~~p~~ 173 (215)
T PTZ00132 136 -T-FHRKKN-LQYYDISAKSNYNFEKPFLWLARRLTNDPNL 173 (215)
T ss_pred -H-HHHHcC-CEEEEEeCCCCCCHHHHHHHHHHHHhhcccc
Confidence 0 111011 1114678888888888888888777655443
No 238
>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.06 E-value=1.2e-09 Score=96.37 Aligned_cols=145 Identities=14% Similarity=0.096 Sum_probs=96.4
Q ss_pred cCCcEEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCCcC
Q 018241 54 SMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVK 133 (359)
Q Consensus 54 ~~~~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~~ 133 (359)
+..++|.+||-++||||.++-++. ......+...-.-+|-....+.+++. ...+++|||+|...
T Consensus 10 d~~~kvlliGDs~vGKt~~l~rf~-d~~f~~~~~sTiGIDFk~kti~l~g~---------------~i~lQiWDtaGQer 73 (207)
T KOG0078|consen 10 DYLFKLLLIGDSGVGKTCLLLRFS-DDSFNTSFISTIGIDFKIKTIELDGK---------------KIKLQIWDTAGQER 73 (207)
T ss_pred ceEEEEEEECCCCCchhHhhhhhh-hccCcCCccceEEEEEEEEEEEeCCe---------------EEEEEEEEcccchh
Confidence 345899999999999999999999 44433222221223333344444442 35699999999976
Q ss_pred CCCcCcchhhhHhhHHHhcccceEEeecCC--------------------CccEEEeCCcccCCcchHHHHhhhhhccHH
Q 018241 134 GASQGEGLGNKFLSHIREVDSILQVVRCFE--------------------DNDIVHVNGKVDPKSDVDVINLELVFSDLD 193 (359)
Q Consensus 134 ~~~~~~~~~~~~l~~i~~aD~il~Vvd~~~--------------------~~~v~~v~nk~d~~~~~~~i~~el~~~d~~ 193 (359)
+.. .+.+++|.|+.+++|+|... +.+.++|.||+|..... .+.. +
T Consensus 74 f~t-------i~~sYyrgA~gi~LvyDitne~Sfeni~~W~~~I~e~a~~~v~~~LvGNK~D~~~~R-~V~~-------e 138 (207)
T KOG0078|consen 74 FRT-------ITTAYYRGAMGILLVYDITNEKSFENIRNWIKNIDEHASDDVVKILVGNKCDLEEKR-QVSK-------E 138 (207)
T ss_pred HHH-------HHHHHHhhcCeeEEEEEccchHHHHHHHHHHHHHHhhCCCCCcEEEeeccccccccc-cccH-------H
Confidence 655 77889999999999999876 34578899999965422 2222 1
Q ss_pred HHHHHHHHHhhhccccccchhhHHHHHHHHHHHHHHhc
Q 018241 194 QIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALM 231 (359)
Q Consensus 194 ~l~~~~~~~~~~~~~~~~Sa~~~~~~~~ll~~i~~~L~ 231 (359)
.-++....+- +....+||+.+.|+.+.+-.+.+.+.
T Consensus 139 ~ge~lA~e~G--~~F~EtSAk~~~NI~eaF~~La~~i~ 174 (207)
T KOG0078|consen 139 RGEALAREYG--IKFFETSAKTNFNIEEAFLSLARDIL 174 (207)
T ss_pred HHHHHHHHhC--CeEEEccccCCCCHHHHHHHHHHHHH
Confidence 2223222221 11256799999999988776666553
No 239
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=99.05 E-value=5.2e-10 Score=110.87 Aligned_cols=163 Identities=21% Similarity=0.170 Sum_probs=90.1
Q ss_pred CCcEEEEEecCCCChhHHHHHHHhcccc--ccCCCCceeccceeEEEEeC-CCccchhccccccc---------cccCce
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVVENGKA--QAANFPFCTIEPNVGIVAVP-DPRLHVLSGLSKSQ---------KAVPAS 122 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~~~~~~--~~~~~p~tT~~~~~g~~~~~-~~r~~~l~~~~~~~---------~~~~~~ 122 (359)
..++|+++|++++|||||+++|++.... ......+.|.+......... .....+ ...+... ...+..
T Consensus 3 ~~~~i~iiG~~~~GKSTL~~~Lt~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 81 (406)
T TIGR03680 3 PEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELKRGISIRLGYADAEIYKCPECDG-PECYTTEPVCPNCGSETELLRR 81 (406)
T ss_pred ceEEEEEEccCCCCHHHHHHHHhCeecccCHhHHHcCceeEecccccccccccccCc-cccccccccccccccccccccE
Confidence 3479999999999999999999843110 00111122322111111000 000000 0000000 001357
Q ss_pred EEEEecCCCcCCCCcCcchhhhHhhHHHhcccceEEeecCCCc------------------cEEEeCCcccCCcchHHHH
Q 018241 123 VEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDN------------------DIVHVNGKVDPKSDVDVIN 184 (359)
Q Consensus 123 i~lvDtpG~~~~~~~~~~~~~~~l~~i~~aD~il~Vvd~~~~~------------------~v~~v~nk~d~~~~~~~i~ 184 (359)
+.|+||||..++ ...+...+..+|++++|+|+.+.. +++.+.||+|...+.....
T Consensus 82 i~liDtPGh~~f-------~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l~~~gi~~iIVvvNK~Dl~~~~~~~~ 154 (406)
T TIGR03680 82 VSFVDAPGHETL-------MATMLSGAALMDGALLVIAANEPCPQPQTKEHLMALEIIGIKNIVIVQNKIDLVSKEKALE 154 (406)
T ss_pred EEEEECCCHHHH-------HHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHHHHcCCCeEEEEEEccccCCHHHHHH
Confidence 999999998543 235677778899999999998531 3677899999764321100
Q ss_pred hhhhhccHHHHHHHHHHH-hhhccccccchhhHHHHHHHHHHHHHHhc
Q 018241 185 LELVFSDLDQIEKRMEKL-KKGKAKDSQSKLKEDAEKAALEKIQQALM 231 (359)
Q Consensus 185 ~el~~~d~~~l~~~~~~~-~~~~~~~~~Sa~~~~~~~~ll~~i~~~L~ 231 (359)
. .+.+...+... .......++||+.+.++.++++.+...++
T Consensus 155 ~------~~~i~~~l~~~~~~~~~ii~vSA~~g~gi~~L~e~L~~~l~ 196 (406)
T TIGR03680 155 N------YEEIKEFVKGTVAENAPIIPVSALHNANIDALLEAIEKFIP 196 (406)
T ss_pred H------HHHHHhhhhhcccCCCeEEEEECCCCCChHHHHHHHHHhCC
Confidence 0 01111111110 00111257899999999999999988775
No 240
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=99.05 E-value=7.2e-10 Score=100.90 Aligned_cols=106 Identities=18% Similarity=0.176 Sum_probs=66.1
Q ss_pred EEEEEecCCCChhHHHHHHHhccccccCCCCcee---------------ccceeEEEEeCCCccchhccccccccccCce
Q 018241 58 RAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCT---------------IEPNVGIVAVPDPRLHVLSGLSKSQKAVPAS 122 (359)
Q Consensus 58 ~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT---------------~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~ 122 (359)
+|+++|+.++|||||+.+|+...........+.+ ++.....+.+.... ....+....+
T Consensus 2 NvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~-------~~~~~~~~~~ 74 (222)
T cd01885 2 NICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEE-------EDKADGNEYL 74 (222)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCc-------ccccCCCceE
Confidence 7999999999999999999844322111111111 11111111111000 0000111467
Q ss_pred EEEEecCCCcCCCCcCcchhhhHhhHHHhcccceEEeecCCC----------------ccEEEeCCcccCC
Q 018241 123 VEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFED----------------NDIVHVNGKVDPK 177 (359)
Q Consensus 123 i~lvDtpG~~~~~~~~~~~~~~~l~~i~~aD~il~Vvd~~~~----------------~~v~~v~nk~d~~ 177 (359)
+.||||||..++.. .....++.+|++++|+|+.+. .+++.+.||+|..
T Consensus 75 i~iiDTPG~~~f~~-------~~~~~l~~aD~~ilVvD~~~g~~~~t~~~l~~~~~~~~p~ilviNKiD~~ 138 (222)
T cd01885 75 INLIDSPGHVDFSS-------EVTAALRLCDGALVVVDAVEGVCVQTETVLRQALKERVKPVLVINKIDRL 138 (222)
T ss_pred EEEECCCCccccHH-------HHHHHHHhcCeeEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECCCcc
Confidence 99999999986554 677888999999999999763 2467788888854
No 241
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.05 E-value=1.3e-09 Score=97.93 Aligned_cols=83 Identities=22% Similarity=0.311 Sum_probs=56.2
Q ss_pred cEEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCCcCCCC
Q 018241 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGAS 136 (359)
Q Consensus 57 ~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~~~~~ 136 (359)
++|.++|.+|||||||+++|++..... .++.+ .++.+....... ..+..+.+|||||..+.
T Consensus 1 ~~vll~G~~~sGKTsL~~~l~~~~~~~--t~~s~--~~~~~~~~~~~~-------------~~~~~~~l~D~pG~~~~-- 61 (203)
T cd04105 1 PTVLLLGPSDSGKTALFTKLTTGKYRS--TVTSI--EPNVATFILNSE-------------GKGKKFRLVDVPGHPKL-- 61 (203)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCCCC--ccCcE--eecceEEEeecC-------------CCCceEEEEECCCCHHH--
Confidence 368999999999999999999543321 22222 244444333210 11356999999998643
Q ss_pred cCcchhhhHhhHHHhc-ccceEEeecCC
Q 018241 137 QGEGLGNKFLSHIREV-DSILQVVRCFE 163 (359)
Q Consensus 137 ~~~~~~~~~l~~i~~a-D~il~Vvd~~~ 163 (359)
...+...++.+ +++++|+|+++
T Consensus 62 -----~~~~~~~~~~~~~~vV~VvD~~~ 84 (203)
T cd04105 62 -----RDKLLETLKNSAKGIVFVVDSAT 84 (203)
T ss_pred -----HHHHHHHHhccCCEEEEEEECcc
Confidence 23556677888 99999999866
No 242
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=99.05 E-value=3.3e-10 Score=112.26 Aligned_cols=115 Identities=17% Similarity=0.089 Sum_probs=65.3
Q ss_pred cEEEEEecCCCChhHHHHHHHhccccccCC----------CCceec-cceeE-EEEe-CCCccch--hccccccccccCc
Q 018241 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAAN----------FPFCTI-EPNVG-IVAV-PDPRLHV--LSGLSKSQKAVPA 121 (359)
Q Consensus 57 ~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~----------~p~tT~-~~~~g-~~~~-~~~r~~~--l~~~~~~~~~~~~ 121 (359)
++|+++|++++|||||+++|+......... ..++|- ..... .+.. +.+|..- +.-.+....+.+.
T Consensus 1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~~~ 80 (406)
T TIGR02034 1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTDKR 80 (406)
T ss_pred CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccCCe
Confidence 589999999999999999998433221110 011110 00000 0000 0000000 0001111222356
Q ss_pred eEEEEecCCCcCCCCcCcchhhhHhhHHHhcccceEEeecCCC-----------------ccEEEeCCcccCCc
Q 018241 122 SVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFED-----------------NDIVHVNGKVDPKS 178 (359)
Q Consensus 122 ~i~lvDtpG~~~~~~~~~~~~~~~l~~i~~aD~il~Vvd~~~~-----------------~~v~~v~nk~d~~~ 178 (359)
++.|+||||..++ .......+..+|++++|||+.+. .+++.+.||+|...
T Consensus 81 ~~~liDtPGh~~f-------~~~~~~~~~~aD~allVVda~~G~~~qt~~~~~~~~~~~~~~iivviNK~D~~~ 147 (406)
T TIGR02034 81 KFIVADTPGHEQY-------TRNMATGASTADLAVLLVDARKGVLEQTRRHSYIASLLGIRHVVLAVNKMDLVD 147 (406)
T ss_pred EEEEEeCCCHHHH-------HHHHHHHHhhCCEEEEEEECCCCCccccHHHHHHHHHcCCCcEEEEEEeccccc
Confidence 8999999997543 22455678899999999998653 13677999999764
No 243
>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]
Probab=99.05 E-value=1.4e-09 Score=91.68 Aligned_cols=143 Identities=20% Similarity=0.217 Sum_probs=92.0
Q ss_pred CCcEEEEEecCCCChhHHHHHHHhccccccCCCCcee--ccceeEEEEeCCCccchhccccccccccCceEEEEecCCCc
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCT--IEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLV 132 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT--~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~ 132 (359)
..+||.+||.+|||||||+-+++....-.-. .+| .|-..-.+.+++.| .++-+|||+|..
T Consensus 10 ~t~KiLlIGeSGVGKSSLllrFv~~~fd~~~---~~tIGvDFkvk~m~vdg~~---------------~KlaiWDTAGqE 71 (209)
T KOG0080|consen 10 TTFKILLIGESGVGKSSLLLRFVSNTFDDLH---PTTIGVDFKVKVMQVDGKR---------------LKLAIWDTAGQE 71 (209)
T ss_pred eeEEEEEEccCCccHHHHHHHHHhcccCccC---CceeeeeEEEEEEEEcCce---------------EEEEEEeccchH
Confidence 3489999999999999999999943332211 133 23444556666554 579999999998
Q ss_pred CCCCcCcchhhhHhhHHHhcccceEEeecCCCc-------------------c--EEEeCCcccCCcchHHHHhhhhhcc
Q 018241 133 KGASQGEGLGNKFLSHIREVDSILQVVRCFEDN-------------------D--IVHVNGKVDPKSDVDVINLELVFSD 191 (359)
Q Consensus 133 ~~~~~~~~~~~~~l~~i~~aD~il~Vvd~~~~~-------------------~--v~~v~nk~d~~~~~~~i~~el~~~d 191 (359)
++.. -+-+..|.|..+++|.|....+ + ...|.||+|...+...-.+|
T Consensus 72 rFRt-------LTpSyyRgaqGiIlVYDVT~Rdtf~kLd~W~~Eld~Ystn~diikmlVgNKiDkes~R~V~reE----- 139 (209)
T KOG0080|consen 72 RFRT-------LTPSYYRGAQGIILVYDVTSRDTFVKLDIWLKELDLYSTNPDIIKMLVGNKIDKESERVVDREE----- 139 (209)
T ss_pred hhhc-------cCHhHhccCceeEEEEEccchhhHHhHHHHHHHHHhhcCCccHhHhhhcccccchhcccccHHH-----
Confidence 7765 4456779999999999987632 2 24577888854322221111
Q ss_pred HHHHHHHHHHHhhhc-cccccchhhHHHHHHHHHHHHHHhcCC
Q 018241 192 LDQIEKRMEKLKKGK-AKDSQSKLKEDAEKAALEKIQQALMDG 233 (359)
Q Consensus 192 ~~~l~~~~~~~~~~~-~~~~~Sa~~~~~~~~ll~~i~~~L~~~ 233 (359)
-+.+..+.. -....||+...++...++++.+.+-+.
T Consensus 140 ------G~kfAr~h~~LFiE~SAkt~~~V~~~FeelveKIi~t 176 (209)
T KOG0080|consen 140 ------GLKFARKHRCLFIECSAKTRENVQCCFEELVEKIIET 176 (209)
T ss_pred ------HHHHHHhhCcEEEEcchhhhccHHHHHHHHHHHHhcC
Confidence 111111111 114568888888888887777666543
No 244
>PRK12740 elongation factor G; Reviewed
Probab=99.04 E-value=9.1e-10 Score=115.88 Aligned_cols=47 Identities=19% Similarity=0.179 Sum_probs=34.4
Q ss_pred HHHHHcCCCHHHHHHHHHHcCCCCchHHHHHHHHHHhcCCeEEecCC
Q 018241 301 VEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSG 347 (359)
Q Consensus 301 le~~l~~l~~~~~~~~l~~~~~~~~~l~~li~~~~~~L~li~ffT~g 347 (359)
+-+.+.+.|++..++|++...++...+...++.+...-.++|+|...
T Consensus 197 l~e~~~~~d~~~le~~l~~~~l~~~~~~~~~~~~~~~~~~~Pv~~gS 243 (668)
T PRK12740 197 LLEALAEFDDELMEKYLEGEELSEEEIKAGLRKATLAGEIVPVFCGS 243 (668)
T ss_pred HHHHHHhcCHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCEEEEEecc
Confidence 44566777888889999887777777777777766666777777643
No 245
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=99.03 E-value=1.1e-09 Score=98.98 Aligned_cols=101 Identities=21% Similarity=0.232 Sum_probs=62.2
Q ss_pred EEEEEecCCCChhHHHHHHHhcccccc---CCCCc---------------eeccceeEEEEeCCCccchhcccccccccc
Q 018241 58 RAGIVGLPNVGKSTLFNAVVENGKAQA---ANFPF---------------CTIEPNVGIVAVPDPRLHVLSGLSKSQKAV 119 (359)
Q Consensus 58 ~i~ivG~pn~GKSTL~n~L~~~~~~~~---~~~p~---------------tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~ 119 (359)
+|+++|++++|||||+++|++...... ....+ .|.+.....+.+ ......
T Consensus 2 nv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~------------~~~~~~ 69 (213)
T cd04167 2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVL------------PDSKGK 69 (213)
T ss_pred cEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEE------------EcCCCC
Confidence 689999999999999999995433321 00000 111111111111 000111
Q ss_pred CceEEEEecCCCcCCCCcCcchhhhHhhHHHhcccceEEeecCCC----------------ccEEEeCCcccCC
Q 018241 120 PASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFED----------------NDIVHVNGKVDPK 177 (359)
Q Consensus 120 ~~~i~lvDtpG~~~~~~~~~~~~~~~l~~i~~aD~il~Vvd~~~~----------------~~v~~v~nk~d~~ 177 (359)
...+.+|||||..++.. .....++.+|++++|+|+.+. .+++.+.||+|.+
T Consensus 70 ~~~i~iiDtpG~~~f~~-------~~~~~~~~aD~~llVvD~~~~~~~~~~~~~~~~~~~~~p~iiviNK~D~~ 136 (213)
T cd04167 70 SYLFNIIDTPGHVNFMD-------EVAAALRLSDGVVLVVDVVEGVTSNTERLIRHAILEGLPIVLVINKIDRL 136 (213)
T ss_pred EEEEEEEECCCCcchHH-------HHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECcccC
Confidence 35799999999976543 566778999999999998653 2356666777654
No 246
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=99.03 E-value=4.2e-10 Score=95.10 Aligned_cols=55 Identities=36% Similarity=0.539 Sum_probs=46.0
Q ss_pred EEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCCc
Q 018241 58 RAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLV 132 (359)
Q Consensus 58 ~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~ 132 (359)
+++++|.||+|||||+|+|++.....+++.+++|++... +.++ ..+.++||||+.
T Consensus 85 ~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~~~~~~~--~~~~------------------~~~~i~DtpG~~ 139 (141)
T cd01857 85 TIGLVGYPNVGKSSLINALVGKKKVSVSATPGKTKHFQT--IFLT------------------PTITLCDCPGLV 139 (141)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCceeeCCCCCcccceEE--EEeC------------------CCEEEEECCCcC
Confidence 899999999999999999998877789999999877543 2232 248999999985
No 247
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=99.01 E-value=1.4e-09 Score=97.61 Aligned_cols=134 Identities=16% Similarity=0.086 Sum_probs=83.0
Q ss_pred EecCCCChhHHHHHHHhccccccCCCCceecc--ceeEEEEeCCCccchhccccccccccCceEEEEecCCCcCCCCcCc
Q 018241 62 VGLPNVGKSTLFNAVVENGKAQAANFPFCTIE--PNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGASQGE 139 (359)
Q Consensus 62 vG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~--~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~~~~~~~~ 139 (359)
||.+|||||||+++++.+... ..+. .|.. ...-.+.+... ...+.+|||||..++..
T Consensus 1 vG~~~vGKTsLi~r~~~~~f~--~~~~-~Tig~~~~~~~~~~~~~---------------~~~l~iwDt~G~e~~~~--- 59 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGEFE--KKYV-ATLGVEVHPLVFHTNRG---------------PIRFNVWDTAGQEKFGG--- 59 (200)
T ss_pred CCCCCCCHHHHHHHHhcCCCC--CCCC-CceeEEEEEEEEEECCE---------------EEEEEEEECCCchhhhh---
Confidence 699999999999999944322 1221 1221 11112222211 35699999999965443
Q ss_pred chhhhHhhHHHhcccceEEeecCCC-------------------ccEEEeCCcccCCcchHHHHhhhhhccHHHHHHHHH
Q 018241 140 GLGNKFLSHIREVDSILQVVRCFED-------------------NDIVHVNGKVDPKSDVDVINLELVFSDLDQIEKRME 200 (359)
Q Consensus 140 ~~~~~~l~~i~~aD~il~Vvd~~~~-------------------~~v~~v~nk~d~~~~~~~i~~el~~~d~~~l~~~~~ 200 (359)
.....++.+|++++|+|+++. .+++.+.||+|.... ....++ + .+.
T Consensus 60 ----l~~~~~~~ad~~ilV~D~t~~~S~~~i~~w~~~i~~~~~~~piilvgNK~Dl~~~-~v~~~~--------~--~~~ 124 (200)
T smart00176 60 ----LRDGYYIQGQCAIIMFDVTARVTYKNVPNWHRDLVRVCENIPIVLCGNKVDVKDR-KVKAKS--------I--TFH 124 (200)
T ss_pred ----hhHHHhcCCCEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccc-cCCHHH--------H--HHH
Confidence 334567899999999998872 367899999996421 111111 1 011
Q ss_pred HHhhhccccccchhhHHHHHHHHHHHHHHhcC
Q 018241 201 KLKKGKAKDSQSKLKEDAEKAALEKIQQALMD 232 (359)
Q Consensus 201 ~~~~~~~~~~~Sa~~~~~~~~ll~~i~~~L~~ 232 (359)
.- .......+||+.+.++.++++.+.+.+..
T Consensus 125 ~~-~~~~~~e~SAk~~~~v~~~F~~l~~~i~~ 155 (200)
T smart00176 125 RK-KNLQYYDISAKSNYNFEKPFLWLARKLIG 155 (200)
T ss_pred HH-cCCEEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence 10 11112567999999999999999877743
No 248
>KOG2484 consensus GTPase [General function prediction only]
Probab=99.01 E-value=3.2e-09 Score=101.49 Aligned_cols=73 Identities=25% Similarity=0.419 Sum_probs=59.5
Q ss_pred hhhhhhhccccCCcEEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCCCccchhccccccccccCceE
Q 018241 44 RRRFSSASKISMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASV 123 (359)
Q Consensus 44 ~~~~~~~~~~~~~~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i 123 (359)
+..+++.......+++||||+||+||||++|+|.....+.+++.||.|+.-+... . +..|
T Consensus 240 lgny~~~~~lk~sIrvGViG~PNVGKSSvINsL~~~k~C~vg~~pGvT~smqeV~--L------------------dk~i 299 (435)
T KOG2484|consen 240 LGNYCRKGELKTSIRVGIIGYPNVGKSSVINSLKRRKACNVGNVPGVTRSMQEVK--L------------------DKKI 299 (435)
T ss_pred hcCcccccccCcceEeeeecCCCCChhHHHHHHHHhccccCCCCccchhhhhhee--c------------------cCCc
Confidence 3456666667788999999999999999999999888899999999996554332 2 3569
Q ss_pred EEEecCCCcCCCC
Q 018241 124 EFVDIAGLVKGAS 136 (359)
Q Consensus 124 ~lvDtpG~~~~~~ 136 (359)
.|+|.||++....
T Consensus 300 ~llDsPgiv~~~~ 312 (435)
T KOG2484|consen 300 RLLDSPGIVPPSI 312 (435)
T ss_pred eeccCCceeecCC
Confidence 9999999986554
No 249
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=99.00 E-value=1.7e-09 Score=110.30 Aligned_cols=98 Identities=17% Similarity=0.153 Sum_probs=56.3
Q ss_pred CCcEEEEEecCCCChhHHHHHHHhcccc--ccCCCC------ceeccceeEEEEeCCCccchhccccccccccCceEEEE
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVVENGKA--QAANFP------FCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFV 126 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~~~~~~--~~~~~p------~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lv 126 (359)
...+|+|+|++++|||||.++|+-...+ ..+... .++.|... ..-+|-..+.-...+..+.+.++.|+
T Consensus 10 ~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~----~E~~rgisi~~~~~~~~~~~~~inli 85 (527)
T TIGR00503 10 KRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWME----MEKQRGISITTSVMQFPYRDCLVNLL 85 (527)
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCH----HHHhcCCcEEEEEEEEeeCCeEEEEE
Confidence 3469999999999999999999622111 111110 01111000 00000000000111122336789999
Q ss_pred ecCCCcCCCCcCcchhhhHhhHHHhcccceEEeecCC
Q 018241 127 DIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFE 163 (359)
Q Consensus 127 DtpG~~~~~~~~~~~~~~~l~~i~~aD~il~Vvd~~~ 163 (359)
||||..++.. .....++.+|++++|+|+.+
T Consensus 86 DTPG~~df~~-------~~~~~l~~aD~aIlVvDa~~ 115 (527)
T TIGR00503 86 DTPGHEDFSE-------DTYRTLTAVDNCLMVIDAAK 115 (527)
T ss_pred ECCChhhHHH-------HHHHHHHhCCEEEEEEECCC
Confidence 9999964433 56778899999999999865
No 250
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=99.00 E-value=1.3e-09 Score=108.13 Aligned_cols=165 Identities=21% Similarity=0.187 Sum_probs=93.5
Q ss_pred cCCcEEEEEecCCCChhHHHHHHHhcc--ccccCCCCceeccceeEEEEeCCC-ccchhccccccc--------c-ccCc
Q 018241 54 SMSLRAGIVGLPNVGKSTLFNAVVENG--KAQAANFPFCTIEPNVGIVAVPDP-RLHVLSGLSKSQ--------K-AVPA 121 (359)
Q Consensus 54 ~~~~~i~ivG~pn~GKSTL~n~L~~~~--~~~~~~~p~tT~~~~~g~~~~~~~-r~~~l~~~~~~~--------~-~~~~ 121 (359)
...++|+++|+.++|||||+.+|++.. .....-..+.|.+.......+... .+ .....|... + ....
T Consensus 7 ~~~~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 85 (411)
T PRK04000 7 QPEVNIGMVGHVDHGKTTLVQALTGVWTDRHSEELKRGITIRLGYADATIRKCPDC-EEPEAYTTEPKCPNCGSETELLR 85 (411)
T ss_pred CCcEEEEEEccCCCCHHHHHHHhhCeecccCHhHHhcCcEEEeccccccccccccc-Ccccccccccccccccccccccc
Confidence 345899999999999999999998421 111111234454432221111000 00 000011000 0 1125
Q ss_pred eEEEEecCCCcCCCCcCcchhhhHhhHHHhcccceEEeecCCC------------------ccEEEeCCcccCCcchHHH
Q 018241 122 SVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFED------------------NDIVHVNGKVDPKSDVDVI 183 (359)
Q Consensus 122 ~i~lvDtpG~~~~~~~~~~~~~~~l~~i~~aD~il~Vvd~~~~------------------~~v~~v~nk~d~~~~~~~i 183 (359)
++.||||||..+ +...++..+..+|++++|+|+.+. .+++.+.||+|...+....
T Consensus 86 ~i~liDtPG~~~-------f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l~~l~~~~i~~iiVVlNK~Dl~~~~~~~ 158 (411)
T PRK04000 86 RVSFVDAPGHET-------LMATMLSGAALMDGAILVIAANEPCPQPQTKEHLMALDIIGIKNIVIVQNKIDLVSKERAL 158 (411)
T ss_pred EEEEEECCCHHH-------HHHHHHHHHhhCCEEEEEEECCCCCCChhHHHHHHHHHHcCCCcEEEEEEeeccccchhHH
Confidence 799999999643 334677777889999999999852 1367788999976432211
Q ss_pred HhhhhhccHHHHHHHHHHH-hhhccccccchhhHHHHHHHHHHHHHHhcC
Q 018241 184 NLELVFSDLDQIEKRMEKL-KKGKAKDSQSKLKEDAEKAALEKIQQALMD 232 (359)
Q Consensus 184 ~~el~~~d~~~l~~~~~~~-~~~~~~~~~Sa~~~~~~~~ll~~i~~~L~~ 232 (359)
.. .+.+....... .......++||+.+.++.++++.+...++.
T Consensus 159 ~~------~~~i~~~l~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~l~~ 202 (411)
T PRK04000 159 EN------YEQIKEFVKGTVAENAPIIPVSALHKVNIDALIEAIEEEIPT 202 (411)
T ss_pred HH------HHHHHHHhccccCCCCeEEEEECCCCcCHHHHHHHHHHhCCC
Confidence 00 01111111110 001112578999999999999999988753
No 251
>KOG0394 consensus Ras-related GTPase [General function prediction only]
Probab=98.99 E-value=1.7e-09 Score=93.26 Aligned_cols=142 Identities=23% Similarity=0.230 Sum_probs=87.9
Q ss_pred cCCcEEEEEecCCCChhHHHHHHHhccccc----cCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecC
Q 018241 54 SMSLRAGIVGLPNVGKSTLFNAVVENGKAQ----AANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIA 129 (359)
Q Consensus 54 ~~~~~i~ivG~pn~GKSTL~n~L~~~~~~~----~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtp 129 (359)
...+||.|.|-+|+|||||+|..+.+.... +-..-|.|++ +.+++. -..+++|||+
T Consensus 7 ~~lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKe-----v~Vd~~---------------~vtlQiWDTA 66 (210)
T KOG0394|consen 7 RTLLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKE-----VQVDDR---------------SVTLQIWDTA 66 (210)
T ss_pred ccceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeE-----EEEcCe---------------EEEEEEEecc
Confidence 456899999999999999999999543321 1112234433 333332 2579999999
Q ss_pred CCcCCCCcCcchhhhHhhHHHhcccceEEeecCCC------------------------ccEEEeCCcccCCcch-HHHH
Q 018241 130 GLVKGASQGEGLGNKFLSHIREVDSILQVVRCFED------------------------NDIVHVNGKVDPKSDV-DVIN 184 (359)
Q Consensus 130 G~~~~~~~~~~~~~~~l~~i~~aD~il~Vvd~~~~------------------------~~v~~v~nk~d~~~~~-~~i~ 184 (359)
|..++.+.+ ....|.||+.++|.|.... -|.+++.||+|.-... ..+.
T Consensus 67 GQERFqsLg-------~aFYRgaDcCvlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~~r~VS 139 (210)
T KOG0394|consen 67 GQERFQSLG-------VAFYRGADCCVLVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDGGKSRQVS 139 (210)
T ss_pred cHHHhhhcc-------cceecCCceEEEEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCCCccceee
Confidence 998887733 2334889999999887551 1478889999854311 1111
Q ss_pred hhhhhccHHHHHHHHHHHhhhccccccchhhHHHHHHHHHHHHHHh
Q 018241 185 LELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQAL 230 (359)
Q Consensus 185 ~el~~~d~~~l~~~~~~~~~~~~~~~~Sa~~~~~~~~ll~~i~~~L 230 (359)
.+ . -..|-.-.....-..+|||+..|+...++.+....
T Consensus 140 ~~-------~-Aq~WC~s~gnipyfEtSAK~~~NV~~AFe~ia~~a 177 (210)
T KOG0394|consen 140 EK-------K-AQTWCKSKGNIPYFETSAKEATNVDEAFEEIARRA 177 (210)
T ss_pred HH-------H-HHHHHHhcCCceeEEecccccccHHHHHHHHHHHH
Confidence 10 0 00111111111114679999999998887666544
No 252
>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]
Probab=98.98 E-value=4.6e-10 Score=110.18 Aligned_cols=61 Identities=34% Similarity=0.393 Sum_probs=52.5
Q ss_pred CcEEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCCcCCC
Q 018241 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA 135 (359)
Q Consensus 56 ~~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~~~~ 135 (359)
-+.||+||+|||||||+||+|.|.+.+.|+..||-|++-+.-.+ ...+.|.|+||++-+.
T Consensus 314 ~vtVG~VGYPNVGKSSTINaLvG~KkVsVS~TPGkTKHFQTi~l--------------------s~~v~LCDCPGLVfPS 373 (562)
T KOG1424|consen 314 VVTVGFVGYPNVGKSSTINALVGRKKVSVSSTPGKTKHFQTIFL--------------------SPSVCLCDCPGLVFPS 373 (562)
T ss_pred eeEEEeecCCCCchhHHHHHHhcCceeeeecCCCCcceeEEEEc--------------------CCCceecCCCCccccC
Confidence 48999999999999999999999999999999999977765444 2359999999998654
Q ss_pred C
Q 018241 136 S 136 (359)
Q Consensus 136 ~ 136 (359)
.
T Consensus 374 f 374 (562)
T KOG1424|consen 374 F 374 (562)
T ss_pred C
Confidence 3
No 253
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.96 E-value=1.3e-09 Score=95.20 Aligned_cols=59 Identities=32% Similarity=0.429 Sum_probs=47.8
Q ss_pred cCCcEEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCCc
Q 018241 54 SMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLV 132 (359)
Q Consensus 54 ~~~~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~ 132 (359)
...++++++|.||+|||||+|+|++.....+++.|++|++...-. ++ ..+.++||||+.
T Consensus 113 ~~~~~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~T~~~~~~~--~~------------------~~~~~iDtpG~~ 171 (171)
T cd01856 113 PRGIRAMVVGIPNVGKSTLINRLRGKKVAKVGNKPGVTKGIQWIK--IS------------------PGIYLLDTPGIL 171 (171)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCceeecCCCCEEeeeEEEE--ec------------------CCEEEEECCCCC
Confidence 345799999999999999999999777778899999997655432 21 248999999983
No 254
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=98.96 E-value=1.9e-09 Score=109.75 Aligned_cols=90 Identities=26% Similarity=0.225 Sum_probs=59.9
Q ss_pred CCcEEEEEecCCCChhHHHHHHHhccccccCCC-CceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCCcC
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANF-PFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVK 133 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~-p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~~ 133 (359)
..++|+++|.||+||||++|+|+|...+.++.. ++|| .......... +.++.+|||||+.+
T Consensus 117 fslrIvLVGKTGVGKSSLINSILGekvf~vss~~~~TT-r~~ei~~~id-----------------G~~L~VIDTPGL~d 178 (763)
T TIGR00993 117 FSLNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTT-SVQEIEGLVQ-----------------GVKIRVIDTPGLKS 178 (763)
T ss_pred cceEEEEECCCCCCHHHHHHHHhccccccccCCCCCce-EEEEEEEEEC-----------------CceEEEEECCCCCc
Confidence 347899999999999999999998777777765 4444 3322222222 35799999999986
Q ss_pred CCCcC---cchhhhHhhHHH--hcccceEEeecC
Q 018241 134 GASQG---EGLGNKFLSHIR--EVDSILQVVRCF 162 (359)
Q Consensus 134 ~~~~~---~~~~~~~l~~i~--~aD~il~Vvd~~ 162 (359)
..... ..+.+.....+. .+|++|+|.+..
T Consensus 179 t~~dq~~neeILk~Ik~~Lsk~gpDVVLlV~RLd 212 (763)
T TIGR00993 179 SASDQSKNEKILSSVKKFIKKNPPDIVLYVDRLD 212 (763)
T ss_pred cccchHHHHHHHHHHHHHHhcCCCCEEEEEEeCC
Confidence 53221 122223333333 479999998753
No 255
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=98.95 E-value=4.6e-09 Score=92.17 Aligned_cols=96 Identities=24% Similarity=0.323 Sum_probs=60.4
Q ss_pred cEEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCCcCCCC
Q 018241 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGAS 136 (359)
Q Consensus 57 ~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~~~~~ 136 (359)
..|.|+|++|+|||+||..|+.+.... ..|..+++.+ ..+.. ..+..+.+||+||..+-..
T Consensus 4 ~~vlL~Gps~SGKTaLf~~L~~~~~~~----T~tS~e~n~~-~~~~~--------------~~~~~~~lvD~PGH~rlr~ 64 (181)
T PF09439_consen 4 PTVLLVGPSGSGKTALFSQLVNGKTVP----TVTSMENNIA-YNVNN--------------SKGKKLRLVDIPGHPRLRS 64 (181)
T ss_dssp -EEEEE-STTSSHHHHHHHHHHSS-------B---SSEEEE-CCGSS--------------TCGTCECEEEETT-HCCCH
T ss_pred ceEEEEcCCCCCHHHHHHHHhcCCcCC----eeccccCCce-EEeec--------------CCCCEEEEEECCCcHHHHH
Confidence 579999999999999999999552211 1122333332 11211 1145699999999965443
Q ss_pred cCcchhhhHhhH---HHhcccceEEeecCC------------------------CccEEEeCCcccCCc
Q 018241 137 QGEGLGNKFLSH---IREVDSILQVVRCFE------------------------DNDIVHVNGKVDPKS 178 (359)
Q Consensus 137 ~~~~~~~~~l~~---i~~aD~il~Vvd~~~------------------------~~~v~~v~nk~d~~~ 178 (359)
.++.. +..+.+|+||||++. ..++.++.||.|...
T Consensus 65 -------~~~~~~~~~~~~k~IIfvvDSs~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~ 126 (181)
T PF09439_consen 65 -------KLLDELKYLSNAKGIIFVVDSSTDQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFT 126 (181)
T ss_dssp -------HHHHHHHHHGGEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT
T ss_pred -------HHHHhhhchhhCCEEEEEEeCccchhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCccccc
Confidence 45444 888999999999975 235788999999663
No 256
>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.93 E-value=8.6e-09 Score=89.05 Aligned_cols=140 Identities=19% Similarity=0.131 Sum_probs=89.4
Q ss_pred CcEEEEEecCCCChhHHHHHHHhccccccCCCCceec--cceeEEEEeCCCccchhccccccccccCceEEEEecCCCcC
Q 018241 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTI--EPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVK 133 (359)
Q Consensus 56 ~~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~--~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~~ 133 (359)
.+|+.++|-.+||||.|+-+.+.+....+.+ .|+ +--...+.++++ +.++++|||+|...
T Consensus 6 ~fKyIiiGd~gVGKSclllrf~~krF~~~hd---~TiGvefg~r~~~id~k---------------~IKlqiwDtaGqe~ 67 (216)
T KOG0098|consen 6 LFKYIIIGDTGVGKSCLLLRFTDKRFQPVHD---LTIGVEFGARMVTIDGK---------------QIKLQIWDTAGQES 67 (216)
T ss_pred eEEEEEECCCCccHHHHHHHHhccCcccccc---ceeeeeeceeEEEEcCc---------------eEEEEEEecCCcHH
Confidence 4799999999999999999999443333222 232 222223444432 35789999999976
Q ss_pred CCCcCcchhhhHhhHHHhcccceEEeecCCCc--------------------cEEEeCCcccCCcchHHHHhhhhhccHH
Q 018241 134 GASQGEGLGNKFLSHIREVDSILQVVRCFEDN--------------------DIVHVNGKVDPKSDVDVINLELVFSDLD 193 (359)
Q Consensus 134 ~~~~~~~~~~~~l~~i~~aD~il~Vvd~~~~~--------------------~v~~v~nk~d~~~~~~~i~~el~~~d~~ 193 (359)
+.+ -..+..+.|-.+|+|.|....+ .+++..||+|.....++-.+|
T Consensus 68 frs-------v~~syYr~a~GalLVydit~r~sF~hL~~wL~D~rq~~~~NmvImLiGNKsDL~~rR~Vs~EE------- 133 (216)
T KOG0098|consen 68 FRS-------VTRSYYRGAAGALLVYDITRRESFNHLTSWLEDARQHSNENMVIMLIGNKSDLEARREVSKEE------- 133 (216)
T ss_pred HHH-------HHHHHhccCcceEEEEEccchhhHHHHHHHHHHHHHhcCCCcEEEEEcchhhhhccccccHHH-------
Confidence 655 4556678899999999976622 256788999976554332222
Q ss_pred HHHHHHHHHhhhccccccchhhHHHHHHHHHHHHHHh
Q 018241 194 QIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQAL 230 (359)
Q Consensus 194 ~l~~~~~~~~~~~~~~~~Sa~~~~~~~~ll~~i~~~L 230 (359)
...+.+-..... ...||+.+.++.+.+......+
T Consensus 134 --GeaFA~ehgLif-mETSakt~~~VEEaF~nta~~I 167 (216)
T KOG0098|consen 134 --GEAFAREHGLIF-METSAKTAENVEEAFINTAKEI 167 (216)
T ss_pred --HHHHHHHcCcee-ehhhhhhhhhHHHHHHHHHHHH
Confidence 111222111111 4578999999988776555444
No 257
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=98.92 E-value=3.6e-09 Score=94.45 Aligned_cols=154 Identities=16% Similarity=0.098 Sum_probs=79.7
Q ss_pred CcEEEEEecCCCChhHHHH-HHHhccccc---cCCCCceeccceeEEEEeCCCccchhcc---ccccccccCceEEEEec
Q 018241 56 SLRAGIVGLPNVGKSTLFN-AVVENGKAQ---AANFPFCTIEPNVGIVAVPDPRLHVLSG---LSKSQKAVPASVEFVDI 128 (359)
Q Consensus 56 ~~~i~ivG~pn~GKSTL~n-~L~~~~~~~---~~~~p~tT~~~~~g~~~~~~~r~~~l~~---~~~~~~~~~~~i~lvDt 128 (359)
.+||+++|.+|||||||++ .+.++.... ...+. |+.+.........+.+.. .+.. ....+.+|||
T Consensus 2 ~~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~-----pTi~~~~~~~~~~~~~~~~~~~~~~---~~v~l~iwDT 73 (195)
T cd01873 2 TIKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHV-----PTVWAIDQYRVCQEVLERSRDVVDG---VSVSLRLWDT 73 (195)
T ss_pred ceEEEEECCCCcCHHHHHHHHHhCCCcccccCccccC-----CceecccceeEEeeeccccceeeCC---EEEEEEEEeC
Confidence 3699999999999999996 555322110 11121 222210000000000000 0111 1357999999
Q ss_pred CCCcCCCCcCcchhhhHhhHHHhcccceEEeecCCC--------------------ccEEEeCCcccCCcchH-HHH---
Q 018241 129 AGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFED--------------------NDIVHVNGKVDPKSDVD-VIN--- 184 (359)
Q Consensus 129 pG~~~~~~~~~~~~~~~l~~i~~aD~il~Vvd~~~~--------------------~~v~~v~nk~d~~~~~~-~i~--- 184 (359)
||..+... ...+++||++++|+|.++. .+++.+.||+|...+.. ...
T Consensus 74 aG~~~~~~---------~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~~~~~~~~~~~~ 144 (195)
T cd01873 74 FGDHDKDR---------RFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFCPRVPVILVGCKLDLRYADLDEVNRAR 144 (195)
T ss_pred CCChhhhh---------cccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhCCCCCEEEEEEchhccccccchhhhcc
Confidence 99853111 1246899999999998762 35788999999643100 000
Q ss_pred ----h---hhhhccHHHHHHHHHHHhhhccccccchhhHHHHHHHHHHHHH
Q 018241 185 ----L---ELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQ 228 (359)
Q Consensus 185 ----~---el~~~d~~~l~~~~~~~~~~~~~~~~Sa~~~~~~~~ll~~i~~ 228 (359)
+ .-..-..+..++...... .....+||+++.++.++++.+.+
T Consensus 145 ~~~~~~~~~~~~V~~~e~~~~a~~~~--~~~~E~SAkt~~~V~e~F~~~~~ 193 (195)
T cd01873 145 RPLARPIKNADILPPETGRAVAKELG--IPYYETSVVTQFGVKDVFDNAIR 193 (195)
T ss_pred cccccccccCCccCHHHHHHHHHHhC--CEEEEcCCCCCCCHHHHHHHHHH
Confidence 0 000001111111111111 11146799999999998887764
No 258
>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]
Probab=98.91 E-value=7.6e-09 Score=102.34 Aligned_cols=143 Identities=19% Similarity=0.123 Sum_probs=98.3
Q ss_pred cEEEEEecCCCChhHHHHHHHhccccc--------------cCCCCceeccceeEEEEeCCCccchhccccccccccCce
Q 018241 57 LRAGIVGLPNVGKSTLFNAVVENGKAQ--------------AANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPAS 122 (359)
Q Consensus 57 ~~i~ivG~pn~GKSTL~n~L~~~~~~~--------------~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~ 122 (359)
.+++||-+--=|||||.-+|+....+. +..--|.|+......+.+.+. ...-
T Consensus 61 RNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~--------------~~yl 126 (650)
T KOG0462|consen 61 RNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDG--------------QSYL 126 (650)
T ss_pred cceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcC--------------CceE
Confidence 578999999999999999998322211 112334555555554444321 1356
Q ss_pred EEEEecCCCcCCCCcCcchhhhHhhHHHhcccceEEeecCCCc----------------cEEEeCCcccCC-cchHHHHh
Q 018241 123 VEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDN----------------DIVHVNGKVDPK-SDVDVINL 185 (359)
Q Consensus 123 i~lvDtpG~~~~~~~~~~~~~~~l~~i~~aD~il~Vvd~~~~~----------------~v~~v~nk~d~~-~~~~~i~~ 185 (359)
+.+|||||.+++.. +.-..+..||.+++||||++.. .++.|+||+|.- .+.+.+.+
T Consensus 127 LNLIDTPGHvDFs~-------EVsRslaac~G~lLvVDA~qGvqAQT~anf~lAfe~~L~iIpVlNKIDlp~adpe~V~~ 199 (650)
T KOG0462|consen 127 LNLIDTPGHVDFSG-------EVSRSLAACDGALLVVDASQGVQAQTVANFYLAFEAGLAIIPVLNKIDLPSADPERVEN 199 (650)
T ss_pred EEeecCCCcccccc-------eehehhhhcCceEEEEEcCcCchHHHHHHHHHHHHcCCeEEEeeeccCCCCCCHHHHHH
Confidence 89999999999887 5556667899999999999964 378899999954 33333333
Q ss_pred hhhhccHHHHHHHHHHHhhhc--cccccchhhHHHHHHHHHHHHHHhcC
Q 018241 186 ELVFSDLDQIEKRMEKLKKGK--AKDSQSKLKEDAEKAALEKIQQALMD 232 (359)
Q Consensus 186 el~~~d~~~l~~~~~~~~~~~--~~~~~Sa~~~~~~~~ll~~i~~~L~~ 232 (359)
.+..+.... +-..+|||+|.+..++|+.|.+..|.
T Consensus 200 ------------q~~~lF~~~~~~~i~vSAK~G~~v~~lL~AII~rVPp 236 (650)
T KOG0462|consen 200 ------------QLFELFDIPPAEVIYVSAKTGLNVEELLEAIIRRVPP 236 (650)
T ss_pred ------------HHHHHhcCCccceEEEEeccCccHHHHHHHHHhhCCC
Confidence 232222211 11578999999999999999999964
No 259
>KOG2423 consensus Nucleolar GTPase [General function prediction only]
Probab=98.91 E-value=4.1e-10 Score=107.22 Aligned_cols=100 Identities=23% Similarity=0.296 Sum_probs=70.2
Q ss_pred ccCCCccchhhhhhhcCccccCCCCcc-hhhhhhhhhccccCCcEEEEEecCCCChhHHHHHHHhccccccCCCCceecc
Q 018241 15 TLLPKPMESSLFTRNANLIGVLGITTT-SSRRRFSSASKISMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIE 93 (359)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~ 93 (359)
..|.+..+.-+| |......+|-+.. +.++++.+-......+.||+||+||+||||++|+|-....+.+++.||-|.-
T Consensus 267 ~~lSkeyPTiAf--HAsi~nsfGKgalI~llRQf~kLh~dkkqISVGfiGYPNvGKSSiINTLR~KkVCkvAPIpGETKV 344 (572)
T KOG2423|consen 267 RHLSKEYPTIAF--HASINNSFGKGALIQLLRQFAKLHSDKKQISVGFIGYPNVGKSSIINTLRKKKVCKVAPIPGETKV 344 (572)
T ss_pred HHHhhhCcceee--ehhhcCccchhHHHHHHHHHHhhccCccceeeeeecCCCCchHHHHHHHhhcccccccCCCCcchH
Confidence 334555555344 4455556664443 3345555554455668999999999999999999998999999999999865
Q ss_pred ceeEEEEeCCCccchhccccccccccCceEEEEecCCCcCCCC
Q 018241 94 PNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGAS 136 (359)
Q Consensus 94 ~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~~~~~ 136 (359)
.+.-.+ -..|.|||+||++....
T Consensus 345 WQYItL--------------------mkrIfLIDcPGvVyps~ 367 (572)
T KOG2423|consen 345 WQYITL--------------------MKRIFLIDCPGVVYPSS 367 (572)
T ss_pred HHHHHH--------------------HhceeEecCCCccCCCC
Confidence 443222 13599999999987654
No 260
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=98.90 E-value=9.4e-09 Score=96.72 Aligned_cols=29 Identities=24% Similarity=0.383 Sum_probs=24.9
Q ss_pred CcEEEEEecCCCChhHHHHHHHhcccccc
Q 018241 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQA 84 (359)
Q Consensus 56 ~~~i~ivG~pn~GKSTL~n~L~~~~~~~~ 84 (359)
.++|+++|.+|+|||||+|+|++......
T Consensus 4 ~f~I~vvG~sg~GKSTliN~L~~~~~~~~ 32 (276)
T cd01850 4 QFNIMVVGESGLGKSTFINTLFNTKLIPS 32 (276)
T ss_pred EEEEEEEcCCCCCHHHHHHHHHcCCCccc
Confidence 47999999999999999999997655543
No 261
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=98.89 E-value=7.8e-09 Score=93.19 Aligned_cols=101 Identities=24% Similarity=0.222 Sum_probs=68.2
Q ss_pred cEEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCCcCCCC
Q 018241 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGAS 136 (359)
Q Consensus 57 ~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~~~~~ 136 (359)
++|+++|.+|||||||+|+|.+........ | +......+.......+ ..++.+|||+|+.+...
T Consensus 6 ~kivv~G~~g~GKTtl~~~l~~~~~~~~~~-~-t~~~~~~~~~~~~~~~--------------~~~~~~~Dt~gq~~~~~ 69 (219)
T COG1100 6 FKIVVLGDGGVGKTTLLNRLVGDEFPEGYP-P-TIGNLDPAKTIEPYRR--------------NIKLQLWDTAGQEEYRS 69 (219)
T ss_pred EEEEEEcCCCccHHHHHHHHhcCcCcccCC-C-ceeeeeEEEEEEeCCC--------------EEEEEeecCCCHHHHHH
Confidence 799999999999999999999554443222 1 2112222322222211 24589999999965432
Q ss_pred cCcchhhhHhhHHHhcccceEEeecCC---------------------CccEEEeCCcccCCcch
Q 018241 137 QGEGLGNKFLSHIREVDSILQVVRCFE---------------------DNDIVHVNGKVDPKSDV 180 (359)
Q Consensus 137 ~~~~~~~~~l~~i~~aD~il~Vvd~~~---------------------~~~v~~v~nk~d~~~~~ 180 (359)
..-...+.++++++|+|... ..+++++.||+|...+.
T Consensus 70 -------~~~~y~~~~~~~l~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~ 127 (219)
T COG1100 70 -------LRPEYYRGANGILIVYDSTLRESSDELTEEWLEELRELAPDDVPILLVGNKIDLFDEQ 127 (219)
T ss_pred -------HHHHHhcCCCEEEEEEecccchhhhHHHHHHHHHHHHhCCCCceEEEEecccccccch
Confidence 33455688999999999875 13578899999987654
No 262
>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.88 E-value=1.2e-08 Score=84.75 Aligned_cols=145 Identities=19% Similarity=0.180 Sum_probs=89.7
Q ss_pred cCCcEEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCCcC
Q 018241 54 SMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVK 133 (359)
Q Consensus 54 ~~~~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~~ 133 (359)
...+|+.|+|...+|||||+-+-++. ...+..+...-++-..-.+.-.++| ..+++|||+|...
T Consensus 19 DymfKlliiGnssvGKTSfl~ry~dd-SFt~afvsTvGidFKvKTvyr~~kR---------------iklQiwDTagqEr 82 (193)
T KOG0093|consen 19 DYMFKLLIIGNSSVGKTSFLFRYADD-SFTSAFVSTVGIDFKVKTVYRSDKR---------------IKLQIWDTAGQER 82 (193)
T ss_pred cceeeEEEEccCCccchhhhHHhhcc-ccccceeeeeeeeEEEeEeeecccE---------------EEEEEEecccchh
Confidence 34469999999999999999999843 3333332222222222233333333 4699999999964
Q ss_pred CCCcCcchhhhHhhHHHhcccceEEeecCCC--------------------ccEEEeCCcccCCcchHHHHhhhhhccHH
Q 018241 134 GASQGEGLGNKFLSHIREVDSILQVVRCFED--------------------NDIVHVNGKVDPKSDVDVINLELVFSDLD 193 (359)
Q Consensus 134 ~~~~~~~~~~~~l~~i~~aD~il~Vvd~~~~--------------------~~v~~v~nk~d~~~~~~~i~~el~~~d~~ 193 (359)
.. .-+-..+|.|++++++.|...+ .+++.+.||+|.-.+. .+..|-...-.+
T Consensus 83 yr-------tiTTayyRgamgfiLmyDitNeeSf~svqdw~tqIktysw~naqvilvgnKCDmd~eR-vis~e~g~~l~~ 154 (193)
T KOG0093|consen 83 YR-------TITTAYYRGAMGFILMYDITNEESFNSVQDWITQIKTYSWDNAQVILVGNKCDMDSER-VISHERGRQLAD 154 (193)
T ss_pred hh-------HHHHHHhhccceEEEEEecCCHHHHHHHHHHHHHheeeeccCceEEEEecccCCccce-eeeHHHHHHHHH
Confidence 32 2456778999999999998773 4689999999965332 332221111111
Q ss_pred HHHHHHHHHhhhccccccchhhHHHHHHHHHHHHHHhc
Q 018241 194 QIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALM 231 (359)
Q Consensus 194 ~l~~~~~~~~~~~~~~~~Sa~~~~~~~~ll~~i~~~L~ 231 (359)
.+. .+. +..|||.+-|+..+++++...+.
T Consensus 155 ~LG--fef-------FEtSaK~NinVk~~Fe~lv~~Ic 183 (193)
T KOG0093|consen 155 QLG--FEF-------FETSAKENINVKQVFERLVDIIC 183 (193)
T ss_pred HhC--hHH-------hhhcccccccHHHHHHHHHHHHH
Confidence 110 011 34577777788777777766653
No 263
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=98.88 E-value=3e-09 Score=106.55 Aligned_cols=97 Identities=14% Similarity=0.130 Sum_probs=65.2
Q ss_pred CCcEEEEEecCCCChhHHHHHHHhccccccC-------------------------------CCCceeccceeEEEEeCC
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAA-------------------------------NFPFCTIEPNVGIVAVPD 103 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~~~~~~~~~-------------------------------~~p~tT~~~~~g~~~~~~ 103 (359)
..++|+++|+.++|||||+.+|+..... +. -..+.|++.....+
T Consensus 6 ~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~-i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~---- 80 (446)
T PTZ00141 6 THINLVVIGHVDSGKSTTTGHLIYKCGG-IDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKF---- 80 (446)
T ss_pred ceEEEEEEecCCCCHHHHHHHHHHHcCC-cChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEE----
Confidence 4579999999999999999999832111 10 01122322222211
Q ss_pred CccchhccccccccccCceEEEEecCCCcCCCCcCcchhhhHhhHHHhcccceEEeecCCCc------------------
Q 018241 104 PRLHVLSGLSKSQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDN------------------ 165 (359)
Q Consensus 104 ~r~~~l~~~~~~~~~~~~~i~lvDtpG~~~~~~~~~~~~~~~l~~i~~aD~il~Vvd~~~~~------------------ 165 (359)
.+.+..+.|+||||..++. ......+..+|++++|||+.+..
T Consensus 81 -------------~~~~~~i~lIDtPGh~~f~-------~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~ 140 (446)
T PTZ00141 81 -------------ETPKYYFTIIDAPGHRDFI-------KNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLA 140 (446)
T ss_pred -------------ccCCeEEEEEECCChHHHH-------HHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHH
Confidence 2225679999999976443 35667788999999999997631
Q ss_pred ------cEEEeCCcccC
Q 018241 166 ------DIVHVNGKVDP 176 (359)
Q Consensus 166 ------~v~~v~nk~d~ 176 (359)
.++.+.||+|.
T Consensus 141 ~~~gi~~iiv~vNKmD~ 157 (446)
T PTZ00141 141 FTLGVKQMIVCINKMDD 157 (446)
T ss_pred HHcCCCeEEEEEEcccc
Confidence 25679999993
No 264
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=98.86 E-value=2.8e-09 Score=104.03 Aligned_cols=59 Identities=24% Similarity=0.359 Sum_probs=46.9
Q ss_pred CcEEEEEecCCCChhHHHHHHHhcc-----ccccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCC
Q 018241 56 SLRAGIVGLPNVGKSTLFNAVVENG-----KAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAG 130 (359)
Q Consensus 56 ~~~i~ivG~pn~GKSTL~n~L~~~~-----~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG 130 (359)
..+|.+||.||||||||+|+|++.. .+.++++|+||++..... .+ ..+.++||||
T Consensus 154 ~~~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~pgtT~~~~~~~--~~------------------~~~~l~DtPG 213 (360)
T TIGR03597 154 KKDVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTTLDLIEIP--LD------------------DGHSLYDTPG 213 (360)
T ss_pred CCeEEEECCCCCCHHHHHHHHHhhccCCcceeeecCCCCeEeeEEEEE--eC------------------CCCEEEECCC
Confidence 3699999999999999999999642 357899999998766443 22 2478999999
Q ss_pred CcCC
Q 018241 131 LVKG 134 (359)
Q Consensus 131 ~~~~ 134 (359)
+...
T Consensus 214 ~~~~ 217 (360)
T TIGR03597 214 IINS 217 (360)
T ss_pred CCCh
Confidence 9754
No 265
>PRK13796 GTPase YqeH; Provisional
Probab=98.86 E-value=2.9e-09 Score=104.08 Aligned_cols=59 Identities=25% Similarity=0.343 Sum_probs=45.3
Q ss_pred CcEEEEEecCCCChhHHHHHHHhcc-----ccccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCC
Q 018241 56 SLRAGIVGLPNVGKSTLFNAVVENG-----KAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAG 130 (359)
Q Consensus 56 ~~~i~ivG~pn~GKSTL~n~L~~~~-----~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG 130 (359)
..++.+||.||||||||+|+|.+.. ...+++.||||++...-. .+ ....++||||
T Consensus 160 ~~~v~vvG~~NvGKSTLiN~L~~~~~~~~~~~~~s~~pGTT~~~~~~~--l~------------------~~~~l~DTPG 219 (365)
T PRK13796 160 GRDVYVVGVTNVGKSTLINRIIKEITGEKDVITTSRFPGTTLDKIEIP--LD------------------DGSFLYDTPG 219 (365)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHhhccCccceEEecCCCCccceeEEEE--cC------------------CCcEEEECCC
Confidence 3589999999999999999998432 345899999998765433 22 2368999999
Q ss_pred CcCC
Q 018241 131 LVKG 134 (359)
Q Consensus 131 ~~~~ 134 (359)
+...
T Consensus 220 i~~~ 223 (365)
T PRK13796 220 IIHR 223 (365)
T ss_pred cccc
Confidence 9743
No 266
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=98.84 E-value=8.1e-09 Score=94.23 Aligned_cols=90 Identities=14% Similarity=0.008 Sum_probs=58.5
Q ss_pred cEEEEEecCCCChhHHHHHHHhc--cccccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCCcCC
Q 018241 57 LRAGIVGLPNVGKSTLFNAVVEN--GKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (359)
Q Consensus 57 ~~i~ivG~pn~GKSTL~n~L~~~--~~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~~~ 134 (359)
.-|+|+|.+++|||||+|.|+|. ........+.||+........... ....++.++||||+...
T Consensus 8 ~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi~~~~~~~~~--------------~~~~~v~~lDteG~~~~ 73 (224)
T cd01851 8 AVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFKL--------------GKEHAVLLLDTEGTDGR 73 (224)
T ss_pred EEEEEECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccceEEEeccccC--------------CCcceEEEEecCCcCcc
Confidence 57999999999999999999976 444445557777644444333321 01357999999999754
Q ss_pred CCcCcchhhhHhhHHHh--cccceEEeec
Q 018241 135 ASQGEGLGNKFLSHIRE--VDSILQVVRC 161 (359)
Q Consensus 135 ~~~~~~~~~~~l~~i~~--aD~il~Vvd~ 161 (359)
.... ......+.++.. +|++++.++.
T Consensus 74 ~~~~-~~~~~~~~~l~~llss~~i~n~~~ 101 (224)
T cd01851 74 ERGE-FEDDARLFALATLLSSVLIYNSWE 101 (224)
T ss_pred ccCc-hhhhhHHHHHHHHHhCEEEEeccC
Confidence 3311 112223334444 8889888875
No 267
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=98.84 E-value=2.6e-08 Score=91.56 Aligned_cols=105 Identities=16% Similarity=0.173 Sum_probs=62.1
Q ss_pred CCcEEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEE-----------EeCCCccc---hhcc---------
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIV-----------AVPDPRLH---VLSG--------- 111 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~-----------~~~~~r~~---~l~~--------- 111 (359)
..++|++||.+++||||++++|+|...... ....+|+.|..-.+ ...+..+. .+..
T Consensus 25 ~~p~i~vvG~~~~GKSt~l~~i~g~~~~~~-~~g~~t~~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 103 (240)
T smart00053 25 DLPQIAVVGGQSAGKSSVLENFVGRDFLPR-GSGIVTRRPLILQLINSSTEYAEFLHCKGKKFTDFDEVRNEIEAETDRV 103 (240)
T ss_pred CCCeEEEEcCCCccHHHHHHHHhCCCcccc-CCCcccccceEEEccCCCCcceEEEecCCcccCCHHHHHHHHHHHHHHh
Confidence 447999999999999999999996542222 23345655544322 11211111 0100
Q ss_pred ---------------ccccccccCceEEEEecCCCcCCCCcC------cchhhhHhhHHHh-cccceEEeecCC
Q 018241 112 ---------------LSKSQKAVPASVEFVDIAGLVKGASQG------EGLGNKFLSHIRE-VDSILQVVRCFE 163 (359)
Q Consensus 112 ---------------~~~~~~~~~~~i~lvDtpG~~~~~~~~------~~~~~~~l~~i~~-aD~il~Vvd~~~ 163 (359)
++.|. -..+.|+||||+......+ ..+.+.+..++++ .++|++|+|+..
T Consensus 104 ~~~~~~~s~~~i~l~i~~p~---~~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~ 174 (240)
T smart00053 104 TGTNKGISPVPINLRVYSPH---VLNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANV 174 (240)
T ss_pred cCCCCcccCcceEEEEeCCC---CCceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCC
Confidence 11111 2479999999997542211 1233456677774 569999999854
No 268
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=98.83 E-value=1.2e-08 Score=93.21 Aligned_cols=52 Identities=23% Similarity=0.217 Sum_probs=38.1
Q ss_pred CceEEEEecCCCcCCCCcCcchhhhHhhHHH--hcccceEEeecCCC----------------ccEEEeCCcccCCc
Q 018241 120 PASVEFVDIAGLVKGASQGEGLGNKFLSHIR--EVDSILQVVRCFED----------------NDIVHVNGKVDPKS 178 (359)
Q Consensus 120 ~~~i~lvDtpG~~~~~~~~~~~~~~~l~~i~--~aD~il~Vvd~~~~----------------~~v~~v~nk~d~~~ 178 (359)
+..+.|+||||..++.. .+...+. .+|++++|+|+.++ .+++.+.||+|.+.
T Consensus 83 ~~~i~liDtpG~~~~~~-------~~~~~~~~~~~D~~llVvda~~g~~~~d~~~l~~l~~~~ip~ivvvNK~D~~~ 152 (224)
T cd04165 83 SKLVTFIDLAGHERYLK-------TTLFGLTGYAPDYAMLVVAANAGIIGMTKEHLGLALALNIPVFVVVTKIDLAP 152 (224)
T ss_pred CcEEEEEECCCcHHHHH-------HHHHhhcccCCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEECccccC
Confidence 45799999999854332 4444443 68999999998763 35788999999764
No 269
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=98.82 E-value=1.7e-08 Score=92.16 Aligned_cols=79 Identities=23% Similarity=0.337 Sum_probs=53.2
Q ss_pred cCCcEEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCCcC
Q 018241 54 SMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVK 133 (359)
Q Consensus 54 ~~~~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~~ 133 (359)
..+..|+++|+||+|||||+|+|.+.... ++.....|.+.+- .+ ...++.|+||||..
T Consensus 37 ~~~~~i~ivG~~~~GKstl~~~l~~~~~~-------~~~~~~~g~i~i~-----------~~---~~~~i~~vDtPg~~- 94 (225)
T cd01882 37 PPPLVVAVVGPPGVGKTTLIKSLVKNYTK-------QNISDIKGPITVV-----------TG---KKRRLTFIECPNDI- 94 (225)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhccc-------CccccccccEEEE-----------ec---CCceEEEEeCCchH-
Confidence 45578999999999999999999954211 1111122211110 00 04579999999853
Q ss_pred CCCcCcchhhhHhhHHHhcccceEEeecCC
Q 018241 134 GASQGEGLGNKFLSHIREVDSILQVVRCFE 163 (359)
Q Consensus 134 ~~~~~~~~~~~~l~~i~~aD~il~Vvd~~~ 163 (359)
...+..++.+|++++|+|++.
T Consensus 95 ---------~~~l~~ak~aDvVllviDa~~ 115 (225)
T cd01882 95 ---------NAMIDIAKVADLVLLLIDASF 115 (225)
T ss_pred ---------HHHHHHHHhcCEEEEEEecCc
Confidence 255677899999999999865
No 270
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.79 E-value=1.1e-08 Score=87.70 Aligned_cols=57 Identities=30% Similarity=0.486 Sum_probs=45.1
Q ss_pred CCcEEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCC
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGL 131 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~ 131 (359)
...++.++|.||+|||||+|+|.+.....+++.+++|.+.. .+..+ ..+.+|||||+
T Consensus 100 ~~~~~~~ig~~~~Gkssl~~~l~~~~~~~~~~~~~~t~~~~--~~~~~------------------~~~~~~DtpGi 156 (156)
T cd01859 100 KEGKVGVVGYPNVGKSSIINALKGRHSASTSPSPGYTKGEQ--LVKIT------------------SKIYLLDTPGV 156 (156)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeeeeeE--EEEcC------------------CCEEEEECcCC
Confidence 45789999999999999999999777778888888885533 22222 35899999996
No 271
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=98.78 E-value=2.4e-08 Score=89.71 Aligned_cols=87 Identities=22% Similarity=0.184 Sum_probs=53.6
Q ss_pred cEEEEEecCCCChhHHHHHHHhccccccCCCCceecc--ceeEEEEeCCCccchhccccccccccCceEEEEecCCCcCC
Q 018241 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIE--PNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (359)
Q Consensus 57 ~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~--~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~~~ 134 (359)
+||+++|.++||||||+++++++.... . + ..|.. .....+.+++.. + ......+.+|||+|....
T Consensus 1 vKIvlvGd~gVGKTSLi~~~~~~~f~~-~-~-~~Tig~~~~~k~~~~~~~~---------~-~~~~~~l~IwDtaG~e~~ 67 (202)
T cd04102 1 VRVLVVGDSGVGKSSLVHLICKNQVLG-R-P-SWTVGCSVDVKHHTYKEGT---------P-EEKTFFVELWDVGGSESV 67 (202)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCC-C-C-CcceeeeEEEEEEEEcCCC---------C-CCcEEEEEEEecCCchhH
Confidence 489999999999999999999544321 1 1 12221 111122332100 0 001246899999998644
Q ss_pred CCcCcchhhhHhhHHHhcccceEEeecCC
Q 018241 135 ASQGEGLGNKFLSHIREVDSILQVVRCFE 163 (359)
Q Consensus 135 ~~~~~~~~~~~l~~i~~aD~il~Vvd~~~ 163 (359)
.. .....++++|++++|+|.++
T Consensus 68 ~~-------l~~~~yr~ad~iIlVyDvtn 89 (202)
T cd04102 68 KS-------TRAVFYNQVNGIILVHDLTN 89 (202)
T ss_pred HH-------HHHHHhCcCCEEEEEEECcC
Confidence 32 22345688999999999865
No 272
>PTZ00416 elongation factor 2; Provisional
Probab=98.78 E-value=1.5e-08 Score=108.73 Aligned_cols=107 Identities=21% Similarity=0.208 Sum_probs=67.9
Q ss_pred cEEEEEecCCCChhHHHHHHHhccccccCCCCceec---------------cceeEEEEeCCCccchhccccccccccCc
Q 018241 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTI---------------EPNVGIVAVPDPRLHVLSGLSKSQKAVPA 121 (359)
Q Consensus 57 ~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~---------------~~~~g~~~~~~~r~~~l~~~~~~~~~~~~ 121 (359)
.+|+|+|+.++|||||.++|+...........++|+ +.....+.+.. ...+..+..+.
T Consensus 20 rni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~-------~~~~~~~~~~~ 92 (836)
T PTZ00416 20 RNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEH-------DLEDGDDKQPF 92 (836)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeec-------ccccccCCCce
Confidence 599999999999999999999543332222222221 00000011100 00001111245
Q ss_pred eEEEEecCCCcCCCCcCcchhhhHhhHHHhcccceEEeecCCC----------------ccEEEeCCcccCC
Q 018241 122 SVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFED----------------NDIVHVNGKVDPK 177 (359)
Q Consensus 122 ~i~lvDtpG~~~~~~~~~~~~~~~l~~i~~aD~il~Vvd~~~~----------------~~v~~v~nk~d~~ 177 (359)
.+.|+||||+.++.. .....++.+|++++|||+.+. .+++.+.||+|..
T Consensus 93 ~i~liDtPG~~~f~~-------~~~~al~~~D~ailVvda~~g~~~~t~~~~~~~~~~~~p~iv~iNK~D~~ 157 (836)
T PTZ00416 93 LINLIDSPGHVDFSS-------EVTAALRVTDGALVVVDCVEGVCVQTETVLRQALQERIRPVLFINKVDRA 157 (836)
T ss_pred EEEEEcCCCHHhHHH-------HHHHHHhcCCeEEEEEECCCCcCccHHHHHHHHHHcCCCEEEEEEChhhh
Confidence 799999999976544 667888999999999999874 2567788888864
No 273
>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.77 E-value=2.7e-08 Score=87.69 Aligned_cols=144 Identities=18% Similarity=0.129 Sum_probs=87.7
Q ss_pred cCCcEEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCCcC
Q 018241 54 SMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVK 133 (359)
Q Consensus 54 ~~~~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~~ 133 (359)
...+||.++|-++||||-|+.+++.+... ....+..-.+.....+.++++ ....++|||+|..+
T Consensus 12 dylFKiVliGDS~VGKsnLlsRftrnEF~-~~SksTIGvef~t~t~~vd~k---------------~vkaqIWDTAGQER 75 (222)
T KOG0087|consen 12 DYLFKIVLIGDSAVGKSNLLSRFTRNEFS-LESKSTIGVEFATRTVNVDGK---------------TVKAQIWDTAGQER 75 (222)
T ss_pred ceEEEEEEeCCCccchhHHHHHhcccccC-cccccceeEEEEeeceeecCc---------------EEEEeeecccchhh
Confidence 34589999999999999999999944333 333322222233333444432 24689999999976
Q ss_pred CCCcCcchhhhHhhHHHhcccceEEeecCCC--------------------ccEEEeCCcccCCcchHHHHhhhhhccHH
Q 018241 134 GASQGEGLGNKFLSHIREVDSILQVVRCFED--------------------NDIVHVNGKVDPKSDVDVINLELVFSDLD 193 (359)
Q Consensus 134 ~~~~~~~~~~~~l~~i~~aD~il~Vvd~~~~--------------------~~v~~v~nk~d~~~~~~~i~~el~~~d~~ 193 (359)
... -.-+..|.|-.+++|.|.+.. ..+..+.||+|... ...+.+|
T Consensus 76 yrA-------itSaYYrgAvGAllVYDITr~~Tfenv~rWL~ELRdhad~nivimLvGNK~DL~~-lraV~te------- 140 (222)
T KOG0087|consen 76 YRA-------ITSAYYRGAVGALLVYDITRRQTFENVERWLKELRDHADSNIVIMLVGNKSDLNH-LRAVPTE------- 140 (222)
T ss_pred hcc-------ccchhhcccceeEEEEechhHHHHHHHHHHHHHHHhcCCCCeEEEEeecchhhhh-ccccchh-------
Confidence 654 234556888999999998651 23678999999653 2222221
Q ss_pred HHHHHHHHHhhhccccccchhhHHHHHHHHHHHHHHh
Q 018241 194 QIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQAL 230 (359)
Q Consensus 194 ~l~~~~~~~~~~~~~~~~Sa~~~~~~~~ll~~i~~~L 230 (359)
. .+..+.-.... ....||....|+...++.+...+
T Consensus 141 ~-~k~~Ae~~~l~-f~EtSAl~~tNVe~aF~~~l~~I 175 (222)
T KOG0087|consen 141 D-GKAFAEKEGLF-FLETSALDATNVEKAFERVLTEI 175 (222)
T ss_pred h-hHhHHHhcCce-EEEecccccccHHHHHHHHHHHH
Confidence 0 11111111111 14568888888877776555444
No 274
>PLN00023 GTP-binding protein; Provisional
Probab=98.77 E-value=3.2e-08 Score=94.19 Aligned_cols=98 Identities=17% Similarity=0.145 Sum_probs=56.3
Q ss_pred CcEEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCCcCCC
Q 018241 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA 135 (359)
Q Consensus 56 ~~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~~~~ 135 (359)
.+||+++|..+||||||++++.++.... ...|....+.....+.+++.- ..+. ...........+.||||+|...+.
T Consensus 21 ~iKIVLLGdsGVGKTSLI~rf~~g~F~~-~~~pTIG~d~~ik~I~~~~~~-~~~~-~ik~d~~k~v~LqIWDTAGqErfr 97 (334)
T PLN00023 21 QVRVLVVGDSGVGKSSLVHLIVKGSSIA-RPPQTIGCTVGVKHITYGSPG-SSSN-SIKGDSERDFFVELWDVSGHERYK 97 (334)
T ss_pred ceEEEEECCCCCcHHHHHHHHhcCCccc-ccCCceeeeEEEEEEEECCcc-cccc-cccccCCceEEEEEEECCCChhhh
Confidence 3799999999999999999999543321 111111111122233332100 0000 000000113569999999986554
Q ss_pred CcCcchhhhHhhHHHhcccceEEeecCC
Q 018241 136 SQGEGLGNKFLSHIREVDSILQVVRCFE 163 (359)
Q Consensus 136 ~~~~~~~~~~l~~i~~aD~il~Vvd~~~ 163 (359)
. ..-..++++|++|+|+|+++
T Consensus 98 s-------L~~~yyr~AdgiILVyDITd 118 (334)
T PLN00023 98 D-------CRSLFYSQINGVIFVHDLSQ 118 (334)
T ss_pred h-------hhHHhccCCCEEEEEEeCCC
Confidence 3 23345788999999999876
No 275
>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]
Probab=98.77 E-value=2.4e-08 Score=84.51 Aligned_cols=139 Identities=22% Similarity=0.219 Sum_probs=90.6
Q ss_pred CcEEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCCcCCC
Q 018241 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA 135 (359)
Q Consensus 56 ~~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~~~~ 135 (359)
.+++.+||-+-+|||+|+..+|.+..+..+ ||+.|+ |+.+.+..-..-...++++|||+|..++.
T Consensus 8 qfrlivigdstvgkssll~~ft~gkfaels-------dptvgv--------dffarlie~~pg~riklqlwdtagqerfr 72 (213)
T KOG0091|consen 8 QFRLIVIGDSTVGKSSLLRYFTEGKFAELS-------DPTVGV--------DFFARLIELRPGYRIKLQLWDTAGQERFR 72 (213)
T ss_pred EEEEEEEcCCcccHHHHHHHHhcCcccccC-------CCccch--------HHHHHHHhcCCCcEEEEEEeeccchHHHH
Confidence 367889999999999999999966666554 455553 33333222222223579999999998776
Q ss_pred CcCcchhhhHhhHHHhcccceEEeecCCCcc----------------------EEEeCCcccCCcchHHHHhhhhhccHH
Q 018241 136 SQGEGLGNKFLSHIREVDSILQVVRCFEDND----------------------IVHVNGKVDPKSDVDVINLELVFSDLD 193 (359)
Q Consensus 136 ~~~~~~~~~~l~~i~~aD~il~Vvd~~~~~~----------------------v~~v~nk~d~~~~~~~i~~el~~~d~~ 193 (359)
+ -+.+..|++=.+++|.|.++... ...|..|.|...+.+...+|
T Consensus 73 s-------itksyyrnsvgvllvyditnr~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~SqRqVt~EE------- 138 (213)
T KOG0091|consen 73 S-------ITKSYYRNSVGVLLVYDITNRESFEHVENWVKEAAMATQGPDKVVFLLVGHKSDLQSQRQVTAEE------- 138 (213)
T ss_pred H-------HHHHHhhcccceEEEEeccchhhHHHHHHHHHHHHHhcCCCCeeEEEEeccccchhhhccccHHH-------
Confidence 6 56778899999999999877321 24566788876554443322
Q ss_pred HHHHHHHHHhhhccccccchhhHHHHHHHHHHH
Q 018241 194 QIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKI 226 (359)
Q Consensus 194 ~l~~~~~~~~~~~~~~~~Sa~~~~~~~~ll~~i 226 (359)
-++ +.+....+. ...|++++.|+++....+
T Consensus 139 -aEk-lAa~hgM~F-VETSak~g~NVeEAF~ml 168 (213)
T KOG0091|consen 139 -AEK-LAASHGMAF-VETSAKNGCNVEEAFDML 168 (213)
T ss_pred -HHH-HHHhcCceE-EEecccCCCcHHHHHHHH
Confidence 122 222222222 567889999888765433
No 276
>PRK13768 GTPase; Provisional
Probab=98.76 E-value=2.8e-08 Score=92.35 Aligned_cols=110 Identities=16% Similarity=0.146 Sum_probs=66.2
Q ss_pred ceEEEEecCCCcCCCCcCcchhhhHhhHHHh--cccceEEeecCC---------------------CccEEEeCCcccCC
Q 018241 121 ASVEFVDIAGLVKGASQGEGLGNKFLSHIRE--VDSILQVVRCFE---------------------DNDIVHVNGKVDPK 177 (359)
Q Consensus 121 ~~i~lvDtpG~~~~~~~~~~~~~~~l~~i~~--aD~il~Vvd~~~---------------------~~~v~~v~nk~d~~ 177 (359)
..+.++||||..+.... ...+..+...+.. ++++++|+|++. +.+++.+.||+|.+
T Consensus 97 ~~~~~~d~~g~~~~~~~-~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~~~~~~~i~v~nK~D~~ 175 (253)
T PRK13768 97 ADYVLVDTPGQMELFAF-RESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQLRLGLPQIPVLNKADLL 175 (253)
T ss_pred CCEEEEeCCcHHHHHhh-hHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHHHcCCCEEEEEEhHhhc
Confidence 47999999998765432 3345566666665 899999999954 22678899999987
Q ss_pred cchH--HHHhhhhhccHHHHHHH--------------H-HHHhhhc---cccccchhhHHHHHHHHHHHHHHhcCC
Q 018241 178 SDVD--VINLELVFSDLDQIEKR--------------M-EKLKKGK---AKDSQSKLKEDAEKAALEKIQQALMDG 233 (359)
Q Consensus 178 ~~~~--~i~~el~~~d~~~l~~~--------------~-~~~~~~~---~~~~~Sa~~~~~~~~ll~~i~~~L~~~ 233 (359)
..-+ .+...+ .+.+.+-.. + +.+.... ....+|++++.++.++++.+.+.|+.+
T Consensus 176 ~~~~~~~~~~~l--~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~vi~iSa~~~~gl~~L~~~I~~~l~~~ 249 (253)
T PRK13768 176 SEEELERILKWL--EDPEYLLEELKLEKGLQGLLSLELLRALEETGLPVRVIPVSAKTGEGFDELYAAIQEVFCGG 249 (253)
T ss_pred CchhHHHHHHHH--hCHHHHHHHHhcccchHHHHHHHHHHHHHHHCCCCcEEEEECCCCcCHHHHHHHHHHHcCCC
Confidence 5432 222221 121111000 0 1111111 114567788888888888888877543
No 277
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=98.75 E-value=3.1e-08 Score=99.26 Aligned_cols=165 Identities=16% Similarity=0.132 Sum_probs=93.3
Q ss_pred CCcEEEEEecCCCChhHHHHHHHhccccc--cCCCCceeccceeEEE---------------EeCCCc-cchhccccccc
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQ--AANFPFCTIEPNVGIV---------------AVPDPR-LHVLSGLSKSQ 116 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~~~~~~~--~~~~p~tT~~~~~g~~---------------~~~~~r-~~~l~~~~~~~ 116 (359)
..++||++|+-..|||||+.+|||..... ..-.-|.|++.--... .+++.. -+..++.....
T Consensus 33 ~~~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (460)
T PTZ00327 33 ATINIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGCGHK 112 (460)
T ss_pred CcEEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCccccccccccccc
Confidence 45899999999999999999999643211 1111223322110000 000000 00001111111
Q ss_pred cccCceEEEEecCCCcCCCCcCcchhhhHhhHHHhcccceEEeecCCC-c-----------------cEEEeCCcccCCc
Q 018241 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFED-N-----------------DIVHVNGKVDPKS 178 (359)
Q Consensus 117 ~~~~~~i~lvDtpG~~~~~~~~~~~~~~~l~~i~~aD~il~Vvd~~~~-~-----------------~v~~v~nk~d~~~ 178 (359)
.....++.|+||||..+ +....+..+..+|++++|||+.+. . +++.++||+|.+.
T Consensus 113 ~~~~~~i~~IDtPGH~~-------fi~~m~~g~~~~D~alLVVda~~g~~~~qT~ehl~i~~~lgi~~iIVvlNKiDlv~ 185 (460)
T PTZ00327 113 MTLKRHVSFVDCPGHDI-------LMATMLNGAAVMDAALLLIAANESCPQPQTSEHLAAVEIMKLKHIIILQNKIDLVK 185 (460)
T ss_pred ccccceEeeeeCCCHHH-------HHHHHHHHHhhCCEEEEEEECCCCccchhhHHHHHHHHHcCCCcEEEEEecccccC
Confidence 11134799999999743 344667778899999999999863 1 2578999999764
Q ss_pred chHHHHhhhhhccHHHHHHHHHHH-hhhccccccchhhHHHHHHHHHHHHHHhcC
Q 018241 179 DVDVINLELVFSDLDQIEKRMEKL-KKGKAKDSQSKLKEDAEKAALEKIQQALMD 232 (359)
Q Consensus 179 ~~~~i~~el~~~d~~~l~~~~~~~-~~~~~~~~~Sa~~~~~~~~ll~~i~~~L~~ 232 (359)
. +.+.. .. +.+...+... .......++||..+.|+..|++.+.+.++.
T Consensus 186 ~-~~~~~--~~---~ei~~~l~~~~~~~~~iipVSA~~G~nI~~Ll~~L~~~lp~ 234 (460)
T PTZ00327 186 E-AQAQD--QY---EEIRNFVKGTIADNAPIIPISAQLKYNIDVVLEYICTQIPI 234 (460)
T ss_pred H-HHHHH--HH---HHHHHHHHhhccCCCeEEEeeCCCCCCHHHHHHHHHhhCCC
Confidence 2 22211 01 1111111111 011122688999999999999999887753
No 278
>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.74 E-value=3e-08 Score=98.23 Aligned_cols=151 Identities=20% Similarity=0.149 Sum_probs=103.4
Q ss_pred hccccCCcEEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecC
Q 018241 50 ASKISMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIA 129 (359)
Q Consensus 50 ~~~~~~~~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtp 129 (359)
....+.++-|-|+|+--=|||||+.+|- +.....+...|.|.+.-.-.+..++ +..++|+|||
T Consensus 147 ~~l~~RpPVVTiMGHVDHGKTTLLD~lR-ks~VAA~E~GGITQhIGAF~V~~p~----------------G~~iTFLDTP 209 (683)
T KOG1145|consen 147 KLLEPRPPVVTIMGHVDHGKTTLLDALR-KSSVAAGEAGGITQHIGAFTVTLPS----------------GKSITFLDTP 209 (683)
T ss_pred hhcCCCCCeEEEeecccCChhhHHHHHh-hCceehhhcCCccceeceEEEecCC----------------CCEEEEecCC
Confidence 3445567899999999999999999999 5555566777888554444455554 5679999999
Q ss_pred CCcCCCCcCcchhhhHhhHHHhcccceEEeecCC----------------CccEEEeCCcccCC-cchHHHHhhhhhccH
Q 018241 130 GLVKGASQGEGLGNKFLSHIREVDSILQVVRCFE----------------DNDIVHVNGKVDPK-SDVDVINLELVFSDL 192 (359)
Q Consensus 130 G~~~~~~~~~~~~~~~l~~i~~aD~il~Vvd~~~----------------~~~v~~v~nk~d~~-~~~~~i~~el~~~d~ 192 (359)
|...+.. .--.-..-+|.+++||-+.+ +.+++..+||+|.. .+.+.+..||.-.++
T Consensus 210 GHaAF~a-------MRaRGA~vtDIvVLVVAadDGVmpQT~EaIkhAk~A~VpiVvAinKiDkp~a~pekv~~eL~~~gi 282 (683)
T KOG1145|consen 210 GHAAFSA-------MRARGANVTDIVVLVVAADDGVMPQTLEAIKHAKSANVPIVVAINKIDKPGANPEKVKRELLSQGI 282 (683)
T ss_pred cHHHHHH-------HHhccCccccEEEEEEEccCCccHhHHHHHHHHHhcCCCEEEEEeccCCCCCCHHHHHHHHHHcCc
Confidence 9853321 00112245799999998877 34789999999954 456667776666554
Q ss_pred HHHHHHHHHHhhhccccccchhhHHHHHHHHHHHHHH
Q 018241 193 DQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQA 229 (359)
Q Consensus 193 ~~l~~~~~~~~~~~~~~~~Sa~~~~~~~~ll~~i~~~ 229 (359)
. +|. +-....-.++||+++.|++.|.+.+.-.
T Consensus 283 ~-~E~----~GGdVQvipiSAl~g~nl~~L~eaill~ 314 (683)
T KOG1145|consen 283 V-VED----LGGDVQVIPISALTGENLDLLEEAILLL 314 (683)
T ss_pred c-HHH----cCCceeEEEeecccCCChHHHHHHHHHH
Confidence 2 222 2222222578999999988877665443
No 279
>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.73 E-value=4.9e-08 Score=84.48 Aligned_cols=139 Identities=19% Similarity=0.189 Sum_probs=90.1
Q ss_pred CCcEEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCCcCC
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~~~ 134 (359)
..++|.++|+-||||||++..|--++...+ . -|+--+...+.+. +.++.+||..|..+.
T Consensus 16 ~e~~IlmlGLD~AGKTTILykLk~~E~vtt--v--PTiGfnVE~v~yk-----------------n~~f~vWDvGGq~k~ 74 (181)
T KOG0070|consen 16 KEMRILMVGLDAAGKTTILYKLKLGEIVTT--V--PTIGFNVETVEYK-----------------NISFTVWDVGGQEKL 74 (181)
T ss_pred ceEEEEEEeccCCCceeeeEeeccCCcccC--C--CccccceeEEEEc-----------------ceEEEEEecCCCccc
Confidence 457999999999999999999974444433 2 2334455556666 467999999999655
Q ss_pred CCcCcchhhhHhhHHHhcccceEEeecCCC---------------------ccEEEeCCcccCCcchH--HHHhhhhhcc
Q 018241 135 ASQGEGLGNKFLSHIREVDSILQVVRCFED---------------------NDIVHVNGKVDPKSDVD--VINLELVFSD 191 (359)
Q Consensus 135 ~~~~~~~~~~~l~~i~~aD~il~Vvd~~~~---------------------~~v~~v~nk~d~~~~~~--~i~~el~~~d 191 (359)
.+ -+..+.++.+++++|||+++. .++....||.|...... .+.+.+.+..
T Consensus 75 R~-------lW~~Y~~~t~~lIfVvDS~Dr~Ri~eak~eL~~~l~~~~l~~~~llv~aNKqD~~~als~~ei~~~L~l~~ 147 (181)
T KOG0070|consen 75 RP-------LWKHYFQNTQGLIFVVDSSDRERIEEAKEELHRMLAEPELRNAPLLVFANKQDLPGALSAAEITNKLGLHS 147 (181)
T ss_pred cc-------chhhhccCCcEEEEEEeCCcHHHHHHHHHHHHHHHcCcccCCceEEEEechhhccccCCHHHHHhHhhhhc
Confidence 54 566777899999999999882 24566677777442221 2222121111
Q ss_pred HHHHHHHHHHHhhh-ccccccchhhHHHHHHHHHHHHHHhc
Q 018241 192 LDQIEKRMEKLKKG-KAKDSQSKLKEDAEKAALEKIQQALM 231 (359)
Q Consensus 192 ~~~l~~~~~~~~~~-~~~~~~Sa~~~~~~~~ll~~i~~~L~ 231 (359)
+ ... ....+.+|..|.++.+.++.+.+.+.
T Consensus 148 l----------~~~~w~iq~~~a~~G~GL~egl~wl~~~~~ 178 (181)
T KOG0070|consen 148 L----------RSRNWHIQSTCAISGEGLYEGLDWLSNNLK 178 (181)
T ss_pred c----------CCCCcEEeeccccccccHHHHHHHHHHHHh
Confidence 1 110 00024567788888888888777664
No 280
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=98.73 E-value=1.9e-08 Score=106.63 Aligned_cols=102 Identities=23% Similarity=0.219 Sum_probs=66.8
Q ss_pred CcEEEEEecCCCChhHHHHHHHhccccccC---------CC------CceeccceeEEEEeCCCccchhccccccccccC
Q 018241 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAA---------NF------PFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVP 120 (359)
Q Consensus 56 ~~~i~ivG~pn~GKSTL~n~L~~~~~~~~~---------~~------p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~ 120 (359)
..+|+++|+.++|||||+++|+........ ++ .+.|++....... ....+.+
T Consensus 19 irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~-------------~~~~~~~ 85 (720)
T TIGR00490 19 IRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMV-------------HEYEGNE 85 (720)
T ss_pred ccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeE-------------EeecCCc
Confidence 369999999999999999999832211100 00 1122221111100 0012335
Q ss_pred ceEEEEecCCCcCCCCcCcchhhhHhhHHHhcccceEEeecCCC----------------ccEEEeCCcccCC
Q 018241 121 ASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFED----------------NDIVHVNGKVDPK 177 (359)
Q Consensus 121 ~~i~lvDtpG~~~~~~~~~~~~~~~l~~i~~aD~il~Vvd~~~~----------------~~v~~v~nk~d~~ 177 (359)
.++.|+||||+.++.. ....+++.+|++++|+|+.+. .+.+.+.||+|..
T Consensus 86 ~~i~liDTPG~~~f~~-------~~~~al~~aD~~llVvda~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~ 151 (720)
T TIGR00490 86 YLINLIDTPGHVDFGG-------DVTRAMRAVDGAIVVVCAVEGVMPQTETVLRQALKENVKPVLFINKVDRL 151 (720)
T ss_pred eEEEEEeCCCccccHH-------HHHHHHHhcCEEEEEEecCCCCCccHHHHHHHHHHcCCCEEEEEEChhcc
Confidence 7899999999986543 567888999999999998762 2457888999975
No 281
>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.73 E-value=6.5e-08 Score=80.98 Aligned_cols=138 Identities=20% Similarity=0.140 Sum_probs=85.5
Q ss_pred CcEEEEEecCCCChhHHHHHHHhccccc-cCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCCcCC
Q 018241 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQ-AANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (359)
Q Consensus 56 ~~~i~ivG~pn~GKSTL~n~L~~~~~~~-~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~~~ 134 (359)
-+|+.++|..|.|||.|+..+..+..-. +++.-| ++--...+.++.++ .++++|||+|..++
T Consensus 9 LfKfl~iG~aGtGKSCLLh~Fie~kfkDdssHTiG--veFgSrIinVGgK~---------------vKLQIWDTAGQErF 71 (214)
T KOG0086|consen 9 LFKFLVIGSAGTGKSCLLHQFIENKFKDDSSHTIG--VEFGSRIVNVGGKT---------------VKLQIWDTAGQERF 71 (214)
T ss_pred hheeEEeccCCCChhHHHHHHHHhhhcccccceee--eeecceeeeecCcE---------------EEEEEeecccHHHH
Confidence 4799999999999999999998444322 222111 12223344555433 57999999999776
Q ss_pred CCcCcchhhhHhhHHHhcccceEEeecCCCc--------------------cEEEeCCcccCCcchHHHHhhhhhccHHH
Q 018241 135 ASQGEGLGNKFLSHIREVDSILQVVRCFEDN--------------------DIVHVNGKVDPKSDVDVINLELVFSDLDQ 194 (359)
Q Consensus 135 ~~~~~~~~~~~l~~i~~aD~il~Vvd~~~~~--------------------~v~~v~nk~d~~~~~~~i~~el~~~d~~~ 194 (359)
.+ ...+..|.|-..++|.|+...+ -++.+.||.|.-.+.+..-.|
T Consensus 72 RS-------VtRsYYRGAAGAlLVYD~TsrdsfnaLtnWL~DaR~lAs~nIvviL~GnKkDL~~~R~VtflE-------- 136 (214)
T KOG0086|consen 72 RS-------VTRSYYRGAAGALLVYDITSRDSFNALTNWLTDARTLASPNIVVILCGNKKDLDPEREVTFLE-------- 136 (214)
T ss_pred HH-------HHHHHhccccceEEEEeccchhhHHHHHHHHHHHHhhCCCcEEEEEeCChhhcChhhhhhHHH--------
Confidence 65 5677789999999999987632 256677888765544332221
Q ss_pred HHHHHHHHhhhccccccchhhHHHHHHHHHHHH
Q 018241 195 IEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQ 227 (359)
Q Consensus 195 l~~~~~~~~~~~~~~~~Sa~~~~~~~~ll~~i~ 227 (359)
...-...+..-....|+..|.|+.+.+-.+.
T Consensus 137 --As~FaqEnel~flETSa~TGeNVEEaFl~c~ 167 (214)
T KOG0086|consen 137 --ASRFAQENELMFLETSALTGENVEEAFLKCA 167 (214)
T ss_pred --HHhhhcccceeeeeecccccccHHHHHHHHH
Confidence 1100001111113457788888877554433
No 282
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.73 E-value=1.4e-08 Score=97.96 Aligned_cols=99 Identities=17% Similarity=0.177 Sum_probs=66.1
Q ss_pred CCcEEEEEecCCCChhHHHHHHHhccccccCC-------------------------------CCceeccceeEEEEeCC
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAAN-------------------------------FPFCTIEPNVGIVAVPD 103 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~-------------------------------~p~tT~~~~~g~~~~~~ 103 (359)
..++++++|+..+|||||+-+|+ -....+.. .-|.|++.....+..+
T Consensus 6 ph~nl~~iGHVD~GKSTl~GrLl-y~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet~- 83 (428)
T COG5256 6 PHLNLVFIGHVDAGKSTLVGRLL-YDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFETD- 83 (428)
T ss_pred CceEEEEEcCCCCCchhhhhhhH-HHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeecC-
Confidence 44799999999999999999998 32222111 1122222222222111
Q ss_pred CccchhccccccccccCceEEEEecCCCcCCCCcCcchhhhHhhHHHhcccceEEeecCCCc------------------
Q 018241 104 PRLHVLSGLSKSQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDN------------------ 165 (359)
Q Consensus 104 ~r~~~l~~~~~~~~~~~~~i~lvDtpG~~~~~~~~~~~~~~~l~~i~~aD~il~Vvd~~~~~------------------ 165 (359)
...+.++|+||..++-. ....-+..||+.++||||..+.
T Consensus 84 ----------------k~~~tIiDaPGHrdFvk-------nmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La 140 (428)
T COG5256 84 ----------------KYNFTIIDAPGHRDFVK-------NMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLA 140 (428)
T ss_pred ----------------CceEEEeeCCchHHHHH-------HhhcchhhccEEEEEEECCCCccccccccCCchhHHHHHH
Confidence 34699999999654433 3455567899999999998862
Q ss_pred ------cEEEeCCcccCCc
Q 018241 166 ------DIVHVNGKVDPKS 178 (359)
Q Consensus 166 ------~v~~v~nk~d~~~ 178 (359)
.++.+.||+|.+.
T Consensus 141 ~tlGi~~lIVavNKMD~v~ 159 (428)
T COG5256 141 RTLGIKQLIVAVNKMDLVS 159 (428)
T ss_pred HhcCCceEEEEEEcccccc
Confidence 2688999999874
No 283
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=98.72 E-value=3e-08 Score=106.66 Aligned_cols=114 Identities=19% Similarity=0.160 Sum_probs=69.5
Q ss_pred CcEEEEEecCCCChhHHHHHHHhccccccCCCCceec---------------cceeEEEEeCCCccchhccccccccccC
Q 018241 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTI---------------EPNVGIVAVPDPRLHVLSGLSKSQKAVP 120 (359)
Q Consensus 56 ~~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~---------------~~~~g~~~~~~~r~~~l~~~~~~~~~~~ 120 (359)
-.+|+|+|+.++|||||+++|+...........+.|+ +.....+.++... ..+...-+..+..+
T Consensus 19 Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 97 (843)
T PLN00116 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTD-ESLKDFKGERDGNE 97 (843)
T ss_pred ccEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeeccc-ccccccccccCCCc
Confidence 3589999999999999999998544332222222221 1111111111000 00000000011124
Q ss_pred ceEEEEecCCCcCCCCcCcchhhhHhhHHHhcccceEEeecCCC----------------ccEEEeCCcccCC
Q 018241 121 ASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFED----------------NDIVHVNGKVDPK 177 (359)
Q Consensus 121 ~~i~lvDtpG~~~~~~~~~~~~~~~l~~i~~aD~il~Vvd~~~~----------------~~v~~v~nk~d~~ 177 (359)
..+.|+||||..++.. .....++.+|++++|||+.+. .+++.++||+|..
T Consensus 98 ~~inliDtPGh~dF~~-------e~~~al~~~D~ailVvda~~Gv~~~t~~~~~~~~~~~~p~i~~iNK~D~~ 163 (843)
T PLN00116 98 YLINLIDSPGHVDFSS-------EVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 163 (843)
T ss_pred eEEEEECCCCHHHHHH-------HHHHHHhhcCEEEEEEECCCCCcccHHHHHHHHHHCCCCEEEEEECCccc
Confidence 5789999999976655 667888999999999999874 2568888999966
No 284
>PRK12289 GTPase RsgA; Reviewed
Probab=98.71 E-value=1.4e-08 Score=98.48 Aligned_cols=58 Identities=19% Similarity=0.284 Sum_probs=44.8
Q ss_pred EEEEEecCCCChhHHHHHHHhccccccCCCCc-------eeccceeEEEEeCCCccchhccccccccccCceEEEEecCC
Q 018241 58 RAGIVGLPNVGKSTLFNAVVENGKAQAANFPF-------CTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAG 130 (359)
Q Consensus 58 ~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~-------tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG 130 (359)
.++|+|.||||||||+|+|.+.....++..++ ||++... +..++ ...++||||
T Consensus 174 i~v~iG~SgVGKSSLIN~L~~~~~~~t~~vs~~~~rGrHTT~~~~l--~~l~~------------------g~~liDTPG 233 (352)
T PRK12289 174 ITVVAGPSGVGKSSLINRLIPDVELRVGKVSGKLGRGRHTTRHVEL--FELPN------------------GGLLADTPG 233 (352)
T ss_pred eEEEEeCCCCCHHHHHHHHcCccccccccccCCCCCCCCcCceeEE--EECCC------------------CcEEEeCCC
Confidence 48999999999999999999888888888888 6755532 22321 248999999
Q ss_pred CcCCC
Q 018241 131 LVKGA 135 (359)
Q Consensus 131 ~~~~~ 135 (359)
+....
T Consensus 234 ~~~~~ 238 (352)
T PRK12289 234 FNQPD 238 (352)
T ss_pred ccccc
Confidence 96554
No 285
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=98.70 E-value=6.1e-08 Score=94.68 Aligned_cols=145 Identities=18% Similarity=0.143 Sum_probs=100.0
Q ss_pred cEEEEEecCCCChhHHHHHHHhcccc--------------ccCCCCceeccceeEEEEeCCCccchhccccccccccCce
Q 018241 57 LRAGIVGLPNVGKSTLFNAVVENGKA--------------QAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPAS 122 (359)
Q Consensus 57 ~~i~ivG~pn~GKSTL~n~L~~~~~~--------------~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~ 122 (359)
.+..||-+---|||||-.+|.....+ ....--|.|+..+...+.+..+. -....
T Consensus 10 RNFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~------------g~~Y~ 77 (603)
T COG0481 10 RNFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKD------------GETYV 77 (603)
T ss_pred cceEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCC------------CCEEE
Confidence 36778888888999999999832111 12234467777777666654321 12356
Q ss_pred EEEEecCCCcCCCCcCcchhhhHhhHHHhcccceEEeecCCCc----------------cEEEeCCcccCC-cchHHHHh
Q 018241 123 VEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDN----------------DIVHVNGKVDPK-SDVDVINL 185 (359)
Q Consensus 123 i~lvDtpG~~~~~~~~~~~~~~~l~~i~~aD~il~Vvd~~~~~----------------~v~~v~nk~d~~-~~~~~i~~ 185 (359)
+.|+||||.+++.. +.-..+..|...++||||+... .++.|+||+|.- .|.+.+
T Consensus 78 lnlIDTPGHVDFsY-------EVSRSLAACEGalLvVDAsQGveAQTlAN~YlAle~~LeIiPViNKIDLP~Adperv-- 148 (603)
T COG0481 78 LNLIDTPGHVDFSY-------EVSRSLAACEGALLVVDASQGVEAQTLANVYLALENNLEIIPVLNKIDLPAADPERV-- 148 (603)
T ss_pred EEEcCCCCccceEE-------EehhhHhhCCCcEEEEECccchHHHHHHHHHHHHHcCcEEEEeeecccCCCCCHHHH--
Confidence 89999999999887 4556667899999999999853 478899999954 233333
Q ss_pred hhhhccHHHHHHHHHHHhhhcc--ccccchhhHHHHHHHHHHHHHHhcC
Q 018241 186 ELVFSDLDQIEKRMEKLKKGKA--KDSQSKLKEDAEKAALEKIQQALMD 232 (359)
Q Consensus 186 el~~~d~~~l~~~~~~~~~~~~--~~~~Sa~~~~~~~~ll~~i~~~L~~ 232 (359)
...++.+...-. ...+|||+|.++.++|+.+.+.+|.
T Consensus 149 ----------k~eIe~~iGid~~dav~~SAKtG~gI~~iLe~Iv~~iP~ 187 (603)
T COG0481 149 ----------KQEIEDIIGIDASDAVLVSAKTGIGIEDVLEAIVEKIPP 187 (603)
T ss_pred ----------HHHHHHHhCCCcchheeEecccCCCHHHHHHHHHhhCCC
Confidence 333333222211 1467999999999999999999964
No 286
>PRK12288 GTPase RsgA; Reviewed
Probab=98.70 E-value=1.7e-08 Score=97.87 Aligned_cols=58 Identities=22% Similarity=0.314 Sum_probs=42.3
Q ss_pred EEEEEecCCCChhHHHHHHHhccccccCCCCc-------eeccceeEEEEeCCCccchhccccccccccCceEEEEecCC
Q 018241 58 RAGIVGLPNVGKSTLFNAVVENGKAQAANFPF-------CTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAG 130 (359)
Q Consensus 58 ~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~-------tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG 130 (359)
.++|+|.||||||||+|+|++.....++..+. ||+.... +.++ ....++||||
T Consensus 207 i~~~vG~sgVGKSTLiN~Ll~~~~~~t~~is~~~~rGrHTT~~~~l--~~l~------------------~~~~liDTPG 266 (347)
T PRK12288 207 ISIFVGQSGVGKSSLINALLPEAEILVGDVSDNSGLGQHTTTAARL--YHFP------------------HGGDLIDSPG 266 (347)
T ss_pred CEEEECCCCCCHHHHHHHhccccceeeccccCcCCCCcCceeeEEE--EEec------------------CCCEEEECCC
Confidence 48999999999999999999877777777765 4533322 2222 1246999999
Q ss_pred CcCCC
Q 018241 131 LVKGA 135 (359)
Q Consensus 131 ~~~~~ 135 (359)
+....
T Consensus 267 ir~~~ 271 (347)
T PRK12288 267 VREFG 271 (347)
T ss_pred CCccc
Confidence 97654
No 287
>PLN00043 elongation factor 1-alpha; Provisional
Probab=98.66 E-value=4e-08 Score=98.44 Aligned_cols=115 Identities=11% Similarity=0.087 Sum_probs=64.7
Q ss_pred CCcEEEEEecCCCChhHHHHHHHhccccccCCCCcee-----ccceeEEEE------e-CCCccch--hccccccccccC
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCT-----IEPNVGIVA------V-PDPRLHV--LSGLSKSQKAVP 120 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT-----~~~~~g~~~------~-~~~r~~~--l~~~~~~~~~~~ 120 (359)
..++|+++|+.++|||||+-+|+-. ...+....-.. .+...+.+. . +.+|..- +.-.+....+..
T Consensus 6 ~~~ni~i~Ghvd~GKSTL~g~Ll~~-~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~~~ 84 (447)
T PLN00043 6 VHINIVVIGHVDSGKSTTTGHLIYK-LGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTK 84 (447)
T ss_pred ceEEEEEEecCCCCHHHHHHHHHHH-hCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecCCC
Confidence 4578999999999999999999822 11111000000 000000000 0 0000000 000111112234
Q ss_pred ceEEEEecCCCcCCCCcCcchhhhHhhHHHhcccceEEeecCCCc------------------------cEEEeCCcccC
Q 018241 121 ASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDN------------------------DIVHVNGKVDP 176 (359)
Q Consensus 121 ~~i~lvDtpG~~~~~~~~~~~~~~~l~~i~~aD~il~Vvd~~~~~------------------------~v~~v~nk~d~ 176 (359)
..+.|+||||..++.. .....++.+|++++|||+.++. .++.+.||+|.
T Consensus 85 ~~i~liDtPGh~df~~-------~~~~g~~~aD~aIlVVda~~G~~e~g~~~~~qT~eh~~~~~~~gi~~iIV~vNKmD~ 157 (447)
T PLN00043 85 YYCTVIDAPGHRDFIK-------NMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDA 157 (447)
T ss_pred EEEEEEECCCHHHHHH-------HHHhhhhhccEEEEEEEcccCceecccCCCchHHHHHHHHHHcCCCcEEEEEEcccC
Confidence 6799999999865543 5566778999999999997631 25678899995
Q ss_pred C
Q 018241 177 K 177 (359)
Q Consensus 177 ~ 177 (359)
.
T Consensus 158 ~ 158 (447)
T PLN00043 158 T 158 (447)
T ss_pred C
Confidence 4
No 288
>PRK07560 elongation factor EF-2; Reviewed
Probab=98.65 E-value=5.5e-08 Score=103.30 Aligned_cols=102 Identities=21% Similarity=0.205 Sum_probs=66.9
Q ss_pred CcEEEEEecCCCChhHHHHHHHhccccccCCCCc---------------eeccceeEEEEeCCCccchhccccccccccC
Q 018241 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPF---------------CTIEPNVGIVAVPDPRLHVLSGLSKSQKAVP 120 (359)
Q Consensus 56 ~~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~---------------tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~ 120 (359)
-.+|+|+|+.++|||||+.+|+...........+ .|++.....+.+ . ....+
T Consensus 20 iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~------------~-~~~~~ 86 (731)
T PRK07560 20 IRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVH------------E-YEGKE 86 (731)
T ss_pred ccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEE------------E-ecCCc
Confidence 3589999999999999999998433222111111 111111111111 0 01125
Q ss_pred ceEEEEecCCCcCCCCcCcchhhhHhhHHHhcccceEEeecCCC----------------ccEEEeCCcccCC
Q 018241 121 ASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFED----------------NDIVHVNGKVDPK 177 (359)
Q Consensus 121 ~~i~lvDtpG~~~~~~~~~~~~~~~l~~i~~aD~il~Vvd~~~~----------------~~v~~v~nk~d~~ 177 (359)
.++.|+||||+.++.. .....++.+|++++|||+.+. .+.+.+.||+|..
T Consensus 87 ~~i~liDtPG~~df~~-------~~~~~l~~~D~avlVvda~~g~~~~t~~~~~~~~~~~~~~iv~iNK~D~~ 152 (731)
T PRK07560 87 YLINLIDTPGHVDFGG-------DVTRAMRAVDGAIVVVDAVEGVMPQTETVLRQALRERVKPVLFINKVDRL 152 (731)
T ss_pred EEEEEEcCCCccChHH-------HHHHHHHhcCEEEEEEECCCCCCccHHHHHHHHHHcCCCeEEEEECchhh
Confidence 6799999999987543 667888999999999998774 2467889999954
No 289
>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]
Probab=98.64 E-value=6e-08 Score=80.78 Aligned_cols=140 Identities=17% Similarity=0.185 Sum_probs=86.2
Q ss_pred CcEEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCCcCCC
Q 018241 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA 135 (359)
Q Consensus 56 ~~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~~~~ 135 (359)
-++..|+|-|++|||+|+..+. .+...-+....+-.|-....+.+++.| ..+++|||+|...+.
T Consensus 8 LfkllIigDsgVGKssLl~rF~-ddtFs~sYitTiGvDfkirTv~i~G~~---------------VkLqIwDtAGqErFr 71 (198)
T KOG0079|consen 8 LFKLLIIGDSGVGKSSLLLRFA-DDTFSGSYITTIGVDFKIRTVDINGDR---------------VKLQIWDTAGQERFR 71 (198)
T ss_pred HHHHHeecCCcccHHHHHHHHh-hcccccceEEEeeeeEEEEEeecCCcE---------------EEEEEeecccHHHHH
Confidence 3677899999999999999998 333222222112234455566666654 679999999986443
Q ss_pred CcCcchhhhHhhHHHhcccceEEeecCCCc-------------------cEEEeCCcccCCcchHHHHhhhhhccHHHHH
Q 018241 136 SQGEGLGNKFLSHIREVDSILQVVRCFEDN-------------------DIVHVNGKVDPKSDVDVINLELVFSDLDQIE 196 (359)
Q Consensus 136 ~~~~~~~~~~l~~i~~aD~il~Vvd~~~~~-------------------~v~~v~nk~d~~~~~~~i~~el~~~d~~~l~ 196 (359)
. ..-...+..+++++|.|..... +-+.|.||.|..+-. .+.+| | .
T Consensus 72 t-------itstyyrgthgv~vVYDVTn~ESF~Nv~rWLeei~~ncdsv~~vLVGNK~d~~~Rr-vV~t~----d----A 135 (198)
T KOG0079|consen 72 T-------ITSTYYRGTHGVIVVYDVTNGESFNNVKRWLEEIRNNCDSVPKVLVGNKNDDPERR-VVDTE----D----A 135 (198)
T ss_pred H-------HHHHHccCCceEEEEEECcchhhhHhHHHHHHHHHhcCccccceecccCCCCccce-eeehH----H----H
Confidence 2 2233457789999999987732 246788888754222 22221 1 1
Q ss_pred HHHHHHhhhcc--ccccchhhHHHHHHHHHHHHHHh
Q 018241 197 KRMEKLKKGKA--KDSQSKLKEDAEKAALEKIQQAL 230 (359)
Q Consensus 197 ~~~~~~~~~~~--~~~~Sa~~~~~~~~ll~~i~~~L 230 (359)
+.+. ..+. -+..||++..|+...+..|.+..
T Consensus 136 r~~A---~~mgie~FETSaKe~~NvE~mF~cit~qv 168 (198)
T KOG0079|consen 136 RAFA---LQMGIELFETSAKENENVEAMFHCITKQV 168 (198)
T ss_pred HHHH---HhcCchheehhhhhcccchHHHHHHHHHH
Confidence 1111 1111 14568888888888777666655
No 290
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=98.62 E-value=1.7e-07 Score=85.62 Aligned_cols=88 Identities=11% Similarity=0.045 Sum_probs=56.3
Q ss_pred EEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCCcCCCCc
Q 018241 58 RAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGASQ 137 (359)
Q Consensus 58 ~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~~~~~~ 137 (359)
||.++|+.++||||..+.+.++-.+.-..+-+.|.+.....+...+ ...+.+||.||.......
T Consensus 1 KiLLmG~~~SGKTSi~~vIF~~~~p~dT~~L~~T~~ve~~~v~~~~----------------~~~l~iwD~pGq~~~~~~ 64 (232)
T PF04670_consen 1 KILLMGPRRSGKTSIRSVIFHKYSPRDTLRLEPTIDVEKSHVRFLS----------------FLPLNIWDCPGQDDFMEN 64 (232)
T ss_dssp EEEEEESTTSSHHHHHHHHHS---GGGGGG-----SEEEEEEECTT----------------SCEEEEEEE-SSCSTTHT
T ss_pred CEEEEcCCCCChhhHHHHHHcCCCchhccccCCcCCceEEEEecCC----------------CcEEEEEEcCCccccccc
Confidence 6899999999999999999955444444455677777766665443 457999999999755331
Q ss_pred CcchhhhHhhHHHhcccceEEeecCC
Q 018241 138 GEGLGNKFLSHIREVDSILQVVRCFE 163 (359)
Q Consensus 138 ~~~~~~~~l~~i~~aD~il~Vvd~~~ 163 (359)
.+...-..-.+++++++||+|+..
T Consensus 65 --~~~~~~~~if~~v~~LIyV~D~qs 88 (232)
T PF04670_consen 65 --YFNSQREEIFSNVGVLIYVFDAQS 88 (232)
T ss_dssp --THTCCHHHHHCTESEEEEEEETT-
T ss_pred --cccccHHHHHhccCEEEEEEEccc
Confidence 111122334588999999999973
No 291
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.61 E-value=1.2e-07 Score=94.22 Aligned_cols=148 Identities=18% Similarity=0.080 Sum_probs=98.3
Q ss_pred CCcEEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCCcCC
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~~~ 134 (359)
.++-|.++|+---|||||+-.+- +.........+.|.+.-...+..+.- ....+.|+||||...+
T Consensus 4 R~PvVtimGHVDHGKTtLLD~IR-~t~Va~~EaGGITQhIGA~~v~~~~~--------------~~~~itFiDTPGHeAF 68 (509)
T COG0532 4 RPPVVTIMGHVDHGKTTLLDKIR-KTNVAAGEAGGITQHIGAYQVPLDVI--------------KIPGITFIDTPGHEAF 68 (509)
T ss_pred CCCEEEEeCcccCCccchhhhHh-cCccccccCCceeeEeeeEEEEeccC--------------CCceEEEEcCCcHHHH
Confidence 56889999999999999999998 55665666777885443334443210 0246999999999644
Q ss_pred CCcCcchhhhHhhHHHhcccceEEeecCC----------------CccEEEeCCcccCCcc-hHHHHhhhhhccHHHHHH
Q 018241 135 ASQGEGLGNKFLSHIREVDSILQVVRCFE----------------DNDIVHVNGKVDPKSD-VDVINLELVFSDLDQIEK 197 (359)
Q Consensus 135 ~~~~~~~~~~~l~~i~~aD~il~Vvd~~~----------------~~~v~~v~nk~d~~~~-~~~i~~el~~~d~~~l~~ 197 (359)
..- +. .-..-+|.+++||++.+ +.|++...||+|.... ...+..|+.-.++. -.
T Consensus 69 t~m------Ra-RGa~vtDIaILVVa~dDGv~pQTiEAI~hak~a~vP~iVAiNKiDk~~~np~~v~~el~~~gl~--~E 139 (509)
T COG0532 69 TAM------RA-RGASVTDIAILVVAADDGVMPQTIEAINHAKAAGVPIVVAINKIDKPEANPDKVKQELQEYGLV--PE 139 (509)
T ss_pred HHH------Hh-cCCccccEEEEEEEccCCcchhHHHHHHHHHHCCCCEEEEEecccCCCCCHHHHHHHHHHcCCC--Hh
Confidence 320 01 11145899999999988 3478999999997743 45555555444332 11
Q ss_pred HHHHHhhhccccccchhhHHHHHHHHHHHHHH
Q 018241 198 RMEKLKKGKAKDSQSKLKEDAEKAALEKIQQA 229 (359)
Q Consensus 198 ~~~~~~~~~~~~~~Sa~~~~~~~~ll~~i~~~ 229 (359)
.|. ......++||+.+.++.+|++.+.-.
T Consensus 140 ~~g---g~v~~VpvSA~tg~Gi~eLL~~ill~ 168 (509)
T COG0532 140 EWG---GDVIFVPVSAKTGEGIDELLELILLL 168 (509)
T ss_pred hcC---CceEEEEeeccCCCCHHHHHHHHHHH
Confidence 121 11122588999999999988766443
No 292
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=98.61 E-value=5.2e-08 Score=90.12 Aligned_cols=58 Identities=22% Similarity=0.160 Sum_probs=41.7
Q ss_pred cEEEEEecCCCChhHHHHHHHhccccccCCCCc-------eeccceeEEEEeCCCccchhccccccccccCceEEEEecC
Q 018241 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPF-------CTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIA 129 (359)
Q Consensus 57 ~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~-------tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtp 129 (359)
..++++|.||||||||+|+|.+.....+++.+. ||++...-.+ . ...++|||
T Consensus 121 ~~~~~~G~sgvGKStLiN~L~~~~~~~t~~i~~~~~~G~hTT~~~~l~~l--~-------------------~~~liDtP 179 (245)
T TIGR00157 121 RISVFAGQSGVGKSSLINALDPSVKQQVNDISSKLGLGKHTTTHVELFHF--H-------------------GGLIADTP 179 (245)
T ss_pred CEEEEECCCCCCHHHHHHHHhhhhhccccceeccCCCCCCcCCceEEEEc--C-------------------CcEEEeCC
Confidence 478999999999999999999776665555443 6654443222 2 14899999
Q ss_pred CCcCCC
Q 018241 130 GLVKGA 135 (359)
Q Consensus 130 G~~~~~ 135 (359)
|+....
T Consensus 180 G~~~~~ 185 (245)
T TIGR00157 180 GFNEFG 185 (245)
T ss_pred CccccC
Confidence 997543
No 293
>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]
Probab=98.60 E-value=6.4e-08 Score=81.50 Aligned_cols=141 Identities=21% Similarity=0.224 Sum_probs=89.9
Q ss_pred CCcEEEEEecCCCChhHHHHHHHhccccccCCCCceeccc--eeEEEEeCCCccchhccccccccccCceEEEEecCCCc
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEP--NVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLV 132 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~--~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~ 132 (359)
-.+||+++|..-||||||+-+.. .......+. +|... ....+.+.|.| +++.+|||+|..
T Consensus 12 ~~FK~VLLGEGCVGKtSLVLRy~-EnkFn~kHl--sTlQASF~~kk~n~ed~r---------------a~L~IWDTAGQE 73 (218)
T KOG0088|consen 12 FKFKIVLLGEGCVGKTSLVLRYV-ENKFNCKHL--STLQASFQNKKVNVEDCR---------------ADLHIWDTAGQE 73 (218)
T ss_pred eeeEEEEEcCCccchhHHHHHHH-HhhcchhhH--HHHHHHHhhcccccccce---------------eeeeeeeccchH
Confidence 45899999999999999999888 433322111 22221 12234444433 679999999997
Q ss_pred CCCCcCcchhhhHhhHHHhcccceEEeecCCCc--------------------cEEEeCCcccCCcchHHHHhhhhhccH
Q 018241 133 KGASQGEGLGNKFLSHIREVDSILQVVRCFEDN--------------------DIVHVNGKVDPKSDVDVINLELVFSDL 192 (359)
Q Consensus 133 ~~~~~~~~~~~~~l~~i~~aD~il~Vvd~~~~~--------------------~v~~v~nk~d~~~~~~~i~~el~~~d~ 192 (359)
++...+ .- +.|.+|.+++|.|..+.+ .+.+|.||+|..++......|-
T Consensus 74 rfHALG----PI---YYRgSnGalLVyDITDrdSFqKVKnWV~Elr~mlGnei~l~IVGNKiDLEeeR~Vt~qeA----- 141 (218)
T KOG0088|consen 74 RFHALG----PI---YYRGSNGALLVYDITDRDSFQKVKNWVLELRTMLGNEIELLIVGNKIDLEEERQVTRQEA----- 141 (218)
T ss_pred hhhccC----ce---EEeCCCceEEEEeccchHHHHHHHHHHHHHHHHhCCeeEEEEecCcccHHHhhhhhHHHH-----
Confidence 665422 22 347899999999998843 3678999999776555444331
Q ss_pred HHHHHHHHHHhhhccccccchhhHHHHHHHHHHHHHHh
Q 018241 193 DQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQAL 230 (359)
Q Consensus 193 ~~l~~~~~~~~~~~~~~~~Sa~~~~~~~~ll~~i~~~L 230 (359)
+..-+.+-... ...||+++.++.++++.+.+.+
T Consensus 142 ---e~YAesvGA~y--~eTSAk~N~Gi~elFe~Lt~~M 174 (218)
T KOG0088|consen 142 ---EAYAESVGALY--METSAKDNVGISELFESLTAKM 174 (218)
T ss_pred ---HHHHHhhchhh--eecccccccCHHHHHHHHHHHH
Confidence 22222222221 3568888888888776655444
No 294
>KOG0465 consensus Mitochondrial elongation factor [Translation, ribosomal structure and biogenesis]
Probab=98.60 E-value=4e-08 Score=98.33 Aligned_cols=231 Identities=13% Similarity=0.109 Sum_probs=130.0
Q ss_pred cEEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCCCccchh------------ccccccccccCceEE
Q 018241 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVL------------SGLSKSQKAVPASVE 124 (359)
Q Consensus 57 ~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~~r~~~l------------~~~~~~~~~~~~~i~ 124 (359)
.+|||+-+--+||||+-++++ .... -+ ...+.+.-.+...|++ +..+.+++ ...+.
T Consensus 40 RNIgi~AhidsgKTT~tEr~L-yy~G-------~~--~~i~ev~~~~a~md~m~~er~rgITiqSAAt~~~w~--~~~iN 107 (721)
T KOG0465|consen 40 RNIGISAHIDAGKTTLTERML-YYTG-------RI--KHIGEVRGGGATMDSMELERQRGITIQSAATYFTWR--DYRIN 107 (721)
T ss_pred cccceEEEEecCCceeeheee-eecc-------ee--eeccccccCceeeehHHHHHhcCceeeeceeeeeec--cceeE
Confidence 589999999999999999987 2221 11 1111111112222222 22333333 56799
Q ss_pred EEecCCCcCCCCcCcchhhhHhhHHHhcccceEEeecCCCccEEEeCCcccCCcchHHHHhhhhhccHHHHHHHHHHHhh
Q 018241 125 FVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPKSDVDVINLELVFSDLDQIEKRMEKLKK 204 (359)
Q Consensus 125 lvDtpG~~~~~~~~~~~~~~~l~~i~~aD~il~Vvd~~~~~~v~~v~nk~d~~~~~~~i~~el~~~d~~~l~~~~~~~~~ 204 (359)
+|||||.+++.- +...+++.-|..+.|+|+... +.. +++-.+........+.--+.+
T Consensus 108 iIDTPGHvDFT~-------EVeRALrVlDGaVlvl~aV~G------------Vqs----Qt~tV~rQ~~ry~vP~i~FiN 164 (721)
T KOG0465|consen 108 IIDTPGHVDFTF-------EVERALRVLDGAVLVLDAVAG------------VES----QTETVWRQMKRYNVPRICFIN 164 (721)
T ss_pred EecCCCceeEEE-------EehhhhhhccCeEEEEEcccc------------eeh----hhHHHHHHHHhcCCCeEEEEe
Confidence 999999998876 556778889999999998332 211 111111111111111111111
Q ss_pred hccccccchhhHHHHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHH-HHhhhhcCCeEEEE----eCCCcccCCCCCChh
Q 018241 205 GKAKDSQSKLKEDAEKAALEKIQQALMDGKPARSVTLNDFERDSIK-QLCLLTMKPIIYVA----NVAESDLADPGSNPH 279 (359)
Q Consensus 205 ~~~~~~~Sa~~~~~~~~ll~~i~~~L~~~~~~~~~~~t~~~~e~i~-~~~~l~~kp~~y~~----nv~~~~~~~~~~~~~ 279 (359)
+++ .-|.+....++.+...|...+.+ .+++..-...+. .+++.-.|.+.+-. .+...++| +..
T Consensus 165 KmD------RmGa~~~~~l~~i~~kl~~~~a~--vqiPig~e~~f~GvvDlv~~kai~~~g~~g~~i~~~eIP----~~l 232 (721)
T KOG0465|consen 165 KMD------RMGASPFRTLNQIRTKLNHKPAV--VQIPIGSESNFKGVVDLVNGKAIYWDGENGEIVRKDEIP----EDL 232 (721)
T ss_pred hhh------hcCCChHHHHHHHHhhcCCchhe--eEccccccccchhHHhhhhceEEEEcCCCCceeEeccCC----HHH
Confidence 222 22334456677777777422111 144433233445 34455555554421 11112333 334
Q ss_pred HHHHHHHHHhcCCeEEEeeHHHHHHHcCCCHHHHHHHHHHcCCCCchHHHHHHHHHHhcCCeEEec
Q 018241 280 VNEVMNLASDLQSGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFT 345 (359)
Q Consensus 280 ~~~i~~~~~~~~~~~i~~sa~le~~l~~l~~~~~~~~l~~~~~~~~~l~~li~~~~~~L~li~ffT 345 (359)
.+...+.+.. +-+-|+++||+..+.||++-..+.+.|..+|+.+--.-.+.|||-
T Consensus 233 ~~~~~e~R~~-----------LIE~lad~DE~l~e~fLee~~ps~~~l~~aIRr~Ti~r~fvPVl~ 287 (721)
T KOG0465|consen 233 EELAEEKRQA-----------LIETLADVDETLAEMFLEEEEPSAQQLKAAIRRATIKRSFVPVLC 287 (721)
T ss_pred HHHHHHHHHH-----------HHHHHhhhhHHHHHHHhccCCCCHHHHHHHHHHHHhhcceeeEEe
Confidence 4444443332 677888998888999999999988999999998877778888875
No 295
>COG2229 Predicted GTPase [General function prediction only]
Probab=98.58 E-value=5.4e-07 Score=78.03 Aligned_cols=87 Identities=13% Similarity=0.145 Sum_probs=59.9
Q ss_pred CCcEEEEEecCCCChhHHHHHHHhccccc-------cCCCC--ceeccceeEEEEeCCCccchhccccccccccCceEEE
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQ-------AANFP--FCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEF 125 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~~~~~~~-------~~~~p--~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~l 125 (359)
...||+++|.-++||||++.+++...... ++... .||.-.-.|...+.+ +..+.|
T Consensus 9 ~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~~~~----------------~~~v~L 72 (187)
T COG2229 9 IETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIELDE----------------DTGVHL 72 (187)
T ss_pred cceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccceEEcC----------------cceEEE
Confidence 34799999999999999999999433211 11111 245444555555543 357999
Q ss_pred EecCCCcCCCCcCcchhhhHhhHHHhcccceEEeecCCC
Q 018241 126 VDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFED 164 (359)
Q Consensus 126 vDtpG~~~~~~~~~~~~~~~l~~i~~aD~il~Vvd~~~~ 164 (359)
+||||..++.- .+--..+.++.++++||++.+
T Consensus 73 fgtPGq~RF~f-------m~~~l~~ga~gaivlVDss~~ 104 (187)
T COG2229 73 FGTPGQERFKF-------MWEILSRGAVGAIVLVDSSRP 104 (187)
T ss_pred ecCCCcHHHHH-------HHHHHhCCcceEEEEEecCCC
Confidence 99999976532 233445789999999999764
No 296
>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]
Probab=98.57 E-value=1.1e-07 Score=88.74 Aligned_cols=72 Identities=24% Similarity=0.329 Sum_probs=54.4
Q ss_pred hhhccccCCcEEEEEecCCCChhHHHHHHHh-----ccccccCCCCceeccceeEEEEeCCCccchhccccccccccCce
Q 018241 48 SSASKISMSLRAGIVGLPNVGKSTLFNAVVE-----NGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPAS 122 (359)
Q Consensus 48 ~~~~~~~~~~~i~ivG~pn~GKSTL~n~L~~-----~~~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~ 122 (359)
+..+...+...+.+||.||+|||||+|++-. ...+.+++.||.|+.. .+.+.+.+ ...
T Consensus 135 r~irt~~~~~~vmVvGvPNVGKSsLINa~r~~~Lrk~k~a~vG~~pGVT~~V-~~~iri~~----------------rp~ 197 (335)
T KOG2485|consen 135 RFIRTLNSEYNVMVVGVPNVGKSSLINALRNVHLRKKKAARVGAEPGVTRRV-SERIRISH----------------RPP 197 (335)
T ss_pred HhhcccCCceeEEEEcCCCCChHHHHHHHHHHHhhhccceeccCCCCceeee-hhheEecc----------------CCc
Confidence 3345456778999999999999999999863 3557799999999744 34454543 234
Q ss_pred EEEEecCCCcCCCC
Q 018241 123 VEFVDIAGLVKGAS 136 (359)
Q Consensus 123 i~lvDtpG~~~~~~ 136 (359)
+.++||||+..+..
T Consensus 198 vy~iDTPGil~P~I 211 (335)
T KOG2485|consen 198 VYLIDTPGILVPSI 211 (335)
T ss_pred eEEecCCCcCCCCC
Confidence 99999999976654
No 297
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=98.52 E-value=9.5e-08 Score=92.66 Aligned_cols=85 Identities=21% Similarity=0.270 Sum_probs=47.4
Q ss_pred cCCcEEEEEecCCCChhHHHHHHHhcc-----ccccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEec
Q 018241 54 SMSLRAGIVGLPNVGKSTLFNAVVENG-----KAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDI 128 (359)
Q Consensus 54 ~~~~~i~ivG~pn~GKSTL~n~L~~~~-----~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDt 128 (359)
..+++|||+|.+|+|||||+|+|-|-. .+.++ ..-||.++.... .|. ...+.|||.
T Consensus 33 ~~~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tG-v~etT~~~~~Y~--~p~----------------~pnv~lWDl 93 (376)
T PF05049_consen 33 NAPLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTG-VVETTMEPTPYP--HPK----------------FPNVTLWDL 93 (376)
T ss_dssp H--EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SS-SHSCCTS-EEEE---SS-----------------TTEEEEEE
T ss_pred cCceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCC-CCcCCCCCeeCC--CCC----------------CCCCeEEeC
Confidence 356899999999999999999997621 12222 223555554332 221 346999999
Q ss_pred CCCcCCCCcCcchhhhHhh--HHHhcccceEEeec
Q 018241 129 AGLVKGASQGEGLGNKFLS--HIREVDSILQVVRC 161 (359)
Q Consensus 129 pG~~~~~~~~~~~~~~~l~--~i~~aD~il~Vvd~ 161 (359)
||+....-. .+.++. .+...|.+++|.+.
T Consensus 94 PG~gt~~f~----~~~Yl~~~~~~~yD~fiii~s~ 124 (376)
T PF05049_consen 94 PGIGTPNFP----PEEYLKEVKFYRYDFFIIISSE 124 (376)
T ss_dssp --GGGSS------HHHHHHHTTGGG-SEEEEEESS
T ss_pred CCCCCCCCC----HHHHHHHccccccCEEEEEeCC
Confidence 999543321 123433 35678988877653
No 298
>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.51 E-value=3.1e-07 Score=81.31 Aligned_cols=84 Identities=25% Similarity=0.358 Sum_probs=61.4
Q ss_pred cccCCcEEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCC
Q 018241 52 KISMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGL 131 (359)
Q Consensus 52 ~~~~~~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~ 131 (359)
+++....|-++|+.++|||+||-.|+-+.. ....|.++|+.+...+++. ...+||.||.
T Consensus 34 rrs~~~~Vll~Gl~dSGKT~LF~qL~~gs~----~~TvtSiepn~a~~r~gs~-----------------~~~LVD~PGH 92 (238)
T KOG0090|consen 34 RRSKQNAVLLVGLSDSGKTSLFTQLITGSH----RGTVTSIEPNEATYRLGSE-----------------NVTLVDLPGH 92 (238)
T ss_pred hhccCCcEEEEecCCCCceeeeeehhcCCc----cCeeeeeccceeeEeecCc-----------------ceEEEeCCCc
Confidence 334457899999999999999999983321 2234677899999888763 3899999998
Q ss_pred cCCCCcCcchhhhHhhHH---HhcccceEEeecCC
Q 018241 132 VKGASQGEGLGNKFLSHI---REVDSILQVVRCFE 163 (359)
Q Consensus 132 ~~~~~~~~~~~~~~l~~i---~~aD~il~Vvd~~~ 163 (359)
.+-.. +++..+ +.+-+|++|||+..
T Consensus 93 ~rlR~-------kl~e~~~~~~~akaiVFVVDSa~ 120 (238)
T KOG0090|consen 93 SRLRR-------KLLEYLKHNYSAKAIVFVVDSAT 120 (238)
T ss_pred HHHHH-------HHHHHccccccceeEEEEEeccc
Confidence 64332 333333 47899999999754
No 299
>PRK00098 GTPase RsgA; Reviewed
Probab=98.49 E-value=1.7e-07 Score=89.14 Aligned_cols=59 Identities=22% Similarity=0.249 Sum_probs=42.3
Q ss_pred CcEEEEEecCCCChhHHHHHHHhccccccCCCCc-------eeccceeEEEEeCCCccchhccccccccccCceEEEEec
Q 018241 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPF-------CTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDI 128 (359)
Q Consensus 56 ~~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~-------tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDt 128 (359)
+..++++|.||||||||+|+|+|.....++..+. ||+......+ + ....++||
T Consensus 164 gk~~~~~G~sgvGKStlin~l~~~~~~~~g~v~~~~~~G~htT~~~~~~~~--~------------------~~~~~~Dt 223 (298)
T PRK00098 164 GKVTVLAGQSGVGKSTLLNALAPDLELKTGEISEALGRGKHTTTHVELYDL--P------------------GGGLLIDT 223 (298)
T ss_pred CceEEEECCCCCCHHHHHHHHhCCcCCCCcceeccCCCCCcccccEEEEEc--C------------------CCcEEEEC
Confidence 3579999999999999999999776666665554 5543333222 2 12589999
Q ss_pred CCCcCC
Q 018241 129 AGLVKG 134 (359)
Q Consensus 129 pG~~~~ 134 (359)
||+...
T Consensus 224 pG~~~~ 229 (298)
T PRK00098 224 PGFSSF 229 (298)
T ss_pred CCcCcc
Confidence 999753
No 300
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=98.47 E-value=4.7e-07 Score=87.05 Aligned_cols=94 Identities=15% Similarity=0.080 Sum_probs=58.1
Q ss_pred CceEEEEecCCCcCCCCcCcchhhhHhhHHHhcccceEEee-cCCCc-----------cEEEeCCcccCCcch--HHHHh
Q 018241 120 PASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVR-CFEDN-----------DIVHVNGKVDPKSDV--DVINL 185 (359)
Q Consensus 120 ~~~i~lvDtpG~~~~~~~~~~~~~~~l~~i~~aD~il~Vvd-~~~~~-----------~v~~v~nk~d~~~~~--~~i~~ 185 (359)
+..+.|+||+|+..... . ....||++++|++ .+.++ .-+.+.||.|....- .....
T Consensus 148 g~d~viieT~Gv~qs~~-------~---i~~~aD~vlvv~~p~~gd~iq~~k~gi~E~aDIiVVNKaDl~~~~~a~~~~~ 217 (332)
T PRK09435 148 GYDVILVETVGVGQSET-------A---VAGMVDFFLLLQLPGAGDELQGIKKGIMELADLIVINKADGDNKTAARRAAA 217 (332)
T ss_pred CCCEEEEECCCCccchh-------H---HHHhCCEEEEEecCCchHHHHHHHhhhhhhhheEEeehhcccchhHHHHHHH
Confidence 56799999999973322 1 3567999999986 32211 126889999976432 11111
Q ss_pred hhhhccHHHHHHHHHHHhhh---c--cccccchhhHHHHHHHHHHHHHHhc
Q 018241 186 ELVFSDLDQIEKRMEKLKKG---K--AKDSQSKLKEDAEKAALEKIQQALM 231 (359)
Q Consensus 186 el~~~d~~~l~~~~~~~~~~---~--~~~~~Sa~~~~~~~~ll~~i~~~L~ 231 (359)
.+...+...... . ....+|++++.++.++++.+.++++
T Consensus 218 --------el~~~L~l~~~~~~~w~~pVi~vSA~~g~GIdeL~~~I~~~~~ 260 (332)
T PRK09435 218 --------EYRSALRLLRPKDPGWQPPVLTCSALEGEGIDEIWQAIEDHRA 260 (332)
T ss_pred --------HHHHHHhcccccccCCCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 122222111100 1 1146899999999999999999986
No 301
>KOG0395 consensus Ras-related GTPase [General function prediction only]
Probab=98.46 E-value=6.1e-07 Score=80.17 Aligned_cols=142 Identities=18% Similarity=0.131 Sum_probs=91.3
Q ss_pred CcEEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCCcCCC
Q 018241 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA 135 (359)
Q Consensus 56 ~~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~~~~ 135 (359)
..+|+++|.+|||||+|...+.+..... .|..|.-+...-.+.+++. ...+.++||+|..++.
T Consensus 3 ~~kvvvlG~~gVGKSal~~qf~~~~f~~--~y~ptied~y~k~~~v~~~---------------~~~l~ilDt~g~~~~~ 65 (196)
T KOG0395|consen 3 EYKVVVLGAGGVGKSALTIQFLTGRFVE--DYDPTIEDSYRKELTVDGE---------------VCMLEILDTAGQEEFS 65 (196)
T ss_pred ceEEEEECCCCCCcchheeeeccccccc--ccCCCccccceEEEEECCE---------------EEEEEEEcCCCcccCh
Confidence 4689999999999999999998544432 3444443444444545432 3568899999954443
Q ss_pred CcCcchhhhHhhHHHhcccceEEeecCC---------------------CccEEEeCCcccCCcchHHHHhhhhhccHHH
Q 018241 136 SQGEGLGNKFLSHIREVDSILQVVRCFE---------------------DNDIVHVNGKVDPKSDVDVINLELVFSDLDQ 194 (359)
Q Consensus 136 ~~~~~~~~~~l~~i~~aD~il~Vvd~~~---------------------~~~v~~v~nk~d~~~~~~~i~~el~~~d~~~ 194 (359)
. .-...++.+|+.++|++..+ ..|++.+.||+|..........|
T Consensus 66 ~-------~~~~~~~~~~gF~lVysitd~~SF~~~~~l~~~I~r~~~~~~~PivlVGNK~Dl~~~R~V~~ee-------- 130 (196)
T KOG0395|consen 66 A-------MRDLYIRNGDGFLLVYSITDRSSFEEAKQLREQILRVKGRDDVPIILVGNKCDLERERQVSEEE-------- 130 (196)
T ss_pred H-------HHHHhhccCcEEEEEEECCCHHHHHHHHHHHHHHHHhhCcCCCCEEEEEEcccchhccccCHHH--------
Confidence 3 22345688999999999877 23789999999977543332222
Q ss_pred HHHHHHHHhhhccccccchhhHHHHHHHHHHHHHHhc
Q 018241 195 IEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALM 231 (359)
Q Consensus 195 l~~~~~~~~~~~~~~~~Sa~~~~~~~~ll~~i~~~L~ 231 (359)
.+.+.....- .....||+...++.+++..+.....
T Consensus 131 -g~~la~~~~~-~f~E~Sak~~~~v~~~F~~L~r~~~ 165 (196)
T KOG0395|consen 131 -GKALARSWGC-AFIETSAKLNYNVDEVFYELVREIR 165 (196)
T ss_pred -HHHHHHhcCC-cEEEeeccCCcCHHHHHHHHHHHHH
Confidence 1111111111 1145688888888888877776653
No 302
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.43 E-value=1.3e-06 Score=81.86 Aligned_cols=155 Identities=23% Similarity=0.210 Sum_probs=95.5
Q ss_pred CCcEEEEEecCCCChhHHHHHHHhccccccCC--CCceeccceeEEEEeCCCccchhccccc---------------ccc
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAAN--FPFCTIEPNVGIVAVPDPRLHVLSGLSK---------------SQK 117 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~--~p~tT~~~~~g~~~~~~~r~~~l~~~~~---------------~~~ 117 (359)
...+||.||+---|||||..||+|--...-+. .-+.|+ ..| |-|..+.+=.+|+. ..+
T Consensus 9 p~vNIG~vGHVdHGKtTlv~AlsGvwT~~hseElkRgitI--kLG---YAd~~i~kC~~c~~~~~y~~~~~C~~cg~~~~ 83 (415)
T COG5257 9 PEVNIGMVGHVDHGKTTLTKALSGVWTDRHSEELKRGITI--KLG---YADAKIYKCPECYRPECYTTEPKCPNCGAETE 83 (415)
T ss_pred cceEeeeeeecccchhhheehhhceeeechhHHHhcCcEE--Eec---cccCceEeCCCCCCCcccccCCCCCCCCCCcc
Confidence 45899999999999999999999632221111 111111 111 11111111111111 112
Q ss_pred ccCceEEEEecCCCcCCCCcCcchhhhHhhHHHhcccceEEeecCCCc------------------cEEEeCCcccCCcc
Q 018241 118 AVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDN------------------DIVHVNGKVDPKSD 179 (359)
Q Consensus 118 ~~~~~i~lvDtpG~~~~~~~~~~~~~~~l~~i~~aD~il~Vvd~~~~~------------------~v~~v~nk~d~~~~ 179 (359)
+ -..+-|+|.||.. -++...++-..-.|.+++|+.+.++. .++.+-||+|.+..
T Consensus 84 l-~R~VSfVDaPGHe-------~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~AleIigik~iiIvQNKIDlV~~ 155 (415)
T COG5257 84 L-VRRVSFVDAPGHE-------TLMATMLSGAALMDGALLVIAANEPCPQPQTREHLMALEIIGIKNIIIVQNKIDLVSR 155 (415)
T ss_pred E-EEEEEEeeCCchH-------HHHHHHhcchhhhcceEEEEecCCCCCCCchHHHHHHHhhhccceEEEEecccceecH
Confidence 2 2368899999973 24444566666679999999998853 37889999998865
Q ss_pred hHHHHhhhhhccHHHHHHHHHHHhhhc----cccccchhhHHHHHHHHHHHHHHhc
Q 018241 180 VDVINLELVFSDLDQIEKRMEKLKKGK----AKDSQSKLKEDAEKAALEKIQQALM 231 (359)
Q Consensus 180 ~~~i~~el~~~d~~~l~~~~~~~~~~~----~~~~~Sa~~~~~~~~ll~~i~~~L~ 231 (359)
-+.+++ .+...+++.... ...++||....|++.+++.+.+.++
T Consensus 156 E~AlE~---------y~qIk~FvkGt~Ae~aPIIPiSA~~~~NIDal~e~i~~~Ip 202 (415)
T COG5257 156 ERALEN---------YEQIKEFVKGTVAENAPIIPISAQHKANIDALIEAIEKYIP 202 (415)
T ss_pred HHHHHH---------HHHHHHHhcccccCCCceeeehhhhccCHHHHHHHHHHhCC
Confidence 444332 233333333221 2268999999999999999999986
No 303
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=98.42 E-value=1.2e-06 Score=71.27 Aligned_cols=128 Identities=17% Similarity=0.235 Sum_probs=75.8
Q ss_pred cEEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCCcCCCC
Q 018241 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGAS 136 (359)
Q Consensus 57 ~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~~~~~ 136 (359)
.++++||..++|||||+|+|-|...-. .....+++.+ =-.+||||-.-...
T Consensus 2 Kri~~vG~~gcGKTtL~q~L~G~~~ly----------kKTQAve~~d-------------------~~~IDTPGEy~~~~ 52 (148)
T COG4917 2 KRIAFVGQVGCGKTTLFQSLYGNDTLY----------KKTQAVEFND-------------------KGDIDTPGEYFEHP 52 (148)
T ss_pred ceeEEecccccCchhHHHHhhcchhhh----------cccceeeccC-------------------ccccCCchhhhhhh
Confidence 379999999999999999999654321 1112233432 12489999753222
Q ss_pred cCcchhhhHhhHHHhcccceEEeecCCC-------------ccEEEeCCcccCCcchHHHHhhhhhccHHHHHHHHHHHh
Q 018241 137 QGEGLGNKFLSHIREVDSILQVVRCFED-------------NDIVHVNGKVDPKSDVDVINLELVFSDLDQIEKRMEKLK 203 (359)
Q Consensus 137 ~~~~~~~~~l~~i~~aD~il~Vvd~~~~-------------~~v~~v~nk~d~~~~~~~i~~el~~~d~~~l~~~~~~~~ 203 (359)
.+-...+-...++|++++|-.+.+. .+++.+..|.|..+|.++ +..++ +-.-.
T Consensus 53 ---~~Y~aL~tt~~dadvi~~v~~and~~s~f~p~f~~~~~k~vIgvVTK~DLaed~dI----------~~~~~-~L~ea 118 (148)
T COG4917 53 ---RWYHALITTLQDADVIIYVHAANDPESRFPPGFLDIGVKKVIGVVTKADLAEDADI----------SLVKR-WLREA 118 (148)
T ss_pred ---HHHHHHHHHhhccceeeeeecccCccccCCcccccccccceEEEEecccccchHhH----------HHHHH-HHHHc
Confidence 1223445566899999999887664 137778888887754332 11111 11111
Q ss_pred hhccccccchhhHHHHHHHHHHHH
Q 018241 204 KGKAKDSQSKLKEDAEKAALEKIQ 227 (359)
Q Consensus 204 ~~~~~~~~Sa~~~~~~~~ll~~i~ 227 (359)
.....+-+|+.+..++.++++.+.
T Consensus 119 Ga~~IF~~s~~d~~gv~~l~~~L~ 142 (148)
T COG4917 119 GAEPIFETSAVDNQGVEELVDYLA 142 (148)
T ss_pred CCcceEEEeccCcccHHHHHHHHH
Confidence 111113456677777777666553
No 304
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=98.41 E-value=2.6e-07 Score=79.54 Aligned_cols=27 Identities=33% Similarity=0.532 Sum_probs=22.0
Q ss_pred cEEEEEecCCCChhHHHHHHHhccccc
Q 018241 57 LRAGIVGLPNVGKSTLFNAVVENGKAQ 83 (359)
Q Consensus 57 ~~i~ivG~pn~GKSTL~n~L~~~~~~~ 83 (359)
-.++++|.+|||||||+|+|.+.....
T Consensus 36 k~~vl~G~SGvGKSSLiN~L~~~~~~~ 62 (161)
T PF03193_consen 36 KTSVLLGQSGVGKSSLINALLPEAKQK 62 (161)
T ss_dssp SEEEEECSTTSSHHHHHHHHHTSS---
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcchh
Confidence 589999999999999999999764433
No 305
>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.39 E-value=1.1e-06 Score=75.35 Aligned_cols=84 Identities=23% Similarity=0.264 Sum_probs=58.7
Q ss_pred CCcEEEEEecCCCChhHHHHHHHhcccc-c--cC--CCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecC
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVVENGKA-Q--AA--NFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIA 129 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~~~~~~-~--~~--~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtp 129 (359)
..+.|.|+|.-|||||||+.++- .... . .. ..-.+|.--+.|.+.+.. ..+.|||.-
T Consensus 16 e~y~vlIlgldnAGKttfLe~~K-t~~~~~~~~l~~~ki~~tvgLnig~i~v~~-----------------~~l~fwdlg 77 (197)
T KOG0076|consen 16 EDYSVLILGLDNAGKTTFLEALK-TDFSKAYGGLNPSKITPTVGLNIGTIEVCN-----------------APLSFWDLG 77 (197)
T ss_pred hhhhheeeccccCCchhHHHHHH-HHHHhhhcCCCHHHeecccceeecceeecc-----------------ceeEEEEcC
Confidence 34689999999999999999986 2221 1 11 112245556677776663 569999999
Q ss_pred CCcCCCCcCcchhhhHhhHHHhcccceEEeecCC
Q 018241 130 GLVKGASQGEGLGNKFLSHIREVDSILQVVRCFE 163 (359)
Q Consensus 130 G~~~~~~~~~~~~~~~l~~i~~aD~il~Vvd~~~ 163 (359)
|.....+ -+-.....|+++++|+|+.+
T Consensus 78 GQe~lrS-------lw~~yY~~~H~ii~viDa~~ 104 (197)
T KOG0076|consen 78 GQESLRS-------LWKKYYWLAHGIIYVIDATD 104 (197)
T ss_pred ChHHHHH-------HHHHHHHHhceeEEeecCCC
Confidence 9853333 44556678999999999977
No 306
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=98.39 E-value=4.2e-07 Score=88.18 Aligned_cols=161 Identities=14% Similarity=0.117 Sum_probs=87.7
Q ss_pred EEEEEecCCCChhHHHHHHH--hccccccCCCCceeccceeEEEEeCCCccchhc----------cccccccccCceEEE
Q 018241 58 RAGIVGLPNVGKSTLFNAVV--ENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLS----------GLSKSQKAVPASVEF 125 (359)
Q Consensus 58 ~i~ivG~pn~GKSTL~n~L~--~~~~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~----------~~~~~~~~~~~~i~l 125 (359)
+.|||-+|-||||||-..|+ |+..... |+.+-...+ ...+.||.. -.+..-.+.+..+.+
T Consensus 14 TFAIISHPDAGKTTlTEkLLlfGgaIq~A----G~Vk~rk~~----~~a~SDWM~iEkqRGISVtsSVMqF~Y~~~~iNL 85 (528)
T COG4108 14 TFAIISHPDAGKTTLTEKLLLFGGAIQEA----GTVKGRKSG----KHAKSDWMEIEKQRGISVTSSVMQFDYADCLVNL 85 (528)
T ss_pred ceeEEecCCCCcccHHHHHHHhcchhhhc----ceeeeccCC----cccccHHHHHHHhcCceEEeeEEEeccCCeEEec
Confidence 78999999999999999887 3322211 111100000 001111110 011111222567999
Q ss_pred EecCCCcCCCCcCcchhhhHhhHHHhcccceEEeecCCCccEEEeCCcccCCcchH-HHHhhhhhccHHHHHHHHHHHhh
Q 018241 126 VDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPKSDVD-VINLELVFSDLDQIEKRMEKLKK 204 (359)
Q Consensus 126 vDtpG~~~~~~~~~~~~~~~l~~i~~aD~il~Vvd~~~~~~v~~v~nk~d~~~~~~-~i~~el~~~d~~~l~~~~~~~~~ 204 (359)
+||||..++.. .++..+..+|.++.|+|+... ++... .+-+-+.+.++. +-.+.+
T Consensus 86 LDTPGHeDFSE-------DTYRtLtAvDsAvMVIDaAKG------------iE~qT~KLfeVcrlR~iP-----I~TFiN 141 (528)
T COG4108 86 LDTPGHEDFSE-------DTYRTLTAVDSAVMVIDAAKG------------IEPQTLKLFEVCRLRDIP-----IFTFIN 141 (528)
T ss_pred cCCCCccccch-------hHHHHHHhhheeeEEEecccC------------ccHHHHHHHHHHhhcCCc-----eEEEee
Confidence 99999988766 778888899999999998442 21110 111111122211 001111
Q ss_pred hccccccchhhHHHHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHhhhhcC
Q 018241 205 GKAKDSQSKLKEDAEKAALEKIQQALMDGKPARSVTLNDFERDSIKQLCLLTMK 258 (359)
Q Consensus 205 ~~~~~~~Sa~~~~~~~~ll~~i~~~L~~~~~~~~~~~t~~~~e~i~~~~~l~~k 258 (359)
+++ ..+..-.+||+.|.+.| +-...|..|+......++.+..+..+
T Consensus 142 KlD------R~~rdP~ELLdEiE~~L--~i~~~PitWPIG~gk~F~Gvy~l~~~ 187 (528)
T COG4108 142 KLD------REGRDPLELLDEIEEEL--GIQCAPITWPIGMGKDFKGVYHLYND 187 (528)
T ss_pred ccc------cccCChHHHHHHHHHHh--CcceecccccccCCcccceeeeeccC
Confidence 111 22333457888888888 44556667887777777755554444
No 307
>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]
Probab=98.38 E-value=1.1e-07 Score=77.78 Aligned_cols=139 Identities=19% Similarity=0.148 Sum_probs=83.6
Q ss_pred EEecCCCChhHHHHHHHhccccccCCC-CceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCCcCCCCcCc
Q 018241 61 IVGLPNVGKSTLFNAVVENGKAQAANF-PFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGASQGE 139 (359)
Q Consensus 61 ivG~pn~GKSTL~n~L~~~~~~~~~~~-p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~~~~~~~~ 139 (359)
++|-+.+|||.|+-+.-.+... .+++ ...-+|.....+.+++. ..++++|||+|..++.+
T Consensus 2 llgds~~gktcllir~kdgafl-~~~fistvgid~rnkli~~~~~---------------kvklqiwdtagqerfrs--- 62 (192)
T KOG0083|consen 2 LLGDSCTGKTCLLIRFKDGAFL-AGNFISTVGIDFRNKLIDMDDK---------------KVKLQIWDTAGQERFRS--- 62 (192)
T ss_pred ccccCccCceEEEEEeccCcee-cCceeeeeeeccccceeccCCc---------------EEEEEEeeccchHHHhh---
Confidence 6799999999998766533222 2222 11223333333444443 25799999999987766
Q ss_pred chhhhHhhHHHhcccceEEeecCCCc--------------------cEEEeCCcccCCcchHHHHhhhhhccHHHHHHHH
Q 018241 140 GLGNKFLSHIREVDSILQVVRCFEDN--------------------DIVHVNGKVDPKSDVDVINLELVFSDLDQIEKRM 199 (359)
Q Consensus 140 ~~~~~~l~~i~~aD~il~Vvd~~~~~--------------------~v~~v~nk~d~~~~~~~i~~el~~~d~~~l~~~~ 199 (359)
.+-+..|+||+++++.|..... .+..+.||+|...+...-.+ .-++.-
T Consensus 63 ----vt~ayyrda~allllydiankasfdn~~~wlsei~ey~k~~v~l~llgnk~d~a~er~v~~d--------dg~kla 130 (192)
T KOG0083|consen 63 ----VTHAYYRDADALLLLYDIANKASFDNCQAWLSEIHEYAKEAVALMLLGNKCDLAHERAVKRD--------DGEKLA 130 (192)
T ss_pred ----hhHhhhcccceeeeeeecccchhHHHHHHHHHHHHHHHHhhHhHhhhccccccchhhccccc--------hHHHHH
Confidence 5567789999999999976532 24567788886543322111 112211
Q ss_pred HHHhhhccccccchhhHHHHHHHHHHHHHHhcC
Q 018241 200 EKLKKGKAKDSQSKLKEDAEKAALEKIQQALMD 232 (359)
Q Consensus 200 ~~~~~~~~~~~~Sa~~~~~~~~ll~~i~~~L~~ 232 (359)
+.+.. +....||+.+-|++-.+-.+.+.|..
T Consensus 131 ~~y~i--pfmetsaktg~nvd~af~~ia~~l~k 161 (192)
T KOG0083|consen 131 EAYGI--PFMETSAKTGFNVDLAFLAIAEELKK 161 (192)
T ss_pred HHHCC--CceeccccccccHhHHHHHHHHHHHH
Confidence 22211 11356888888888777777666643
No 308
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=98.34 E-value=1.3e-06 Score=80.18 Aligned_cols=174 Identities=13% Similarity=0.186 Sum_probs=91.4
Q ss_pred cCCcEEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCC------------------------------
Q 018241 54 SMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPD------------------------------ 103 (359)
Q Consensus 54 ~~~~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~------------------------------ 103 (359)
..+.-|.++|..|+||||++.+|.+.-.+.-.+.--...||-...++++-
T Consensus 17 ~~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ppYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LGPNGgI~TsLN 96 (366)
T KOG1532|consen 17 QRPVIILVVGMAGSGKTTFMQRLNSHLHAKKTPPYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLGPNGGIVTSLN 96 (366)
T ss_pred cCCcEEEEEecCCCCchhHHHHHHHHHhhccCCCeEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhCCCCCcchhhhHH
Confidence 35678899999999999999999843222111100112233222222221
Q ss_pred ---CccchhccccccccccCceEEEEecCCCcCCC---CcCcchhhhHhhHHHhcccceEEeecCCC-------------
Q 018241 104 ---PRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA---SQGEGLGNKFLSHIREVDSILQVVRCFED------------- 164 (359)
Q Consensus 104 ---~r~~~l~~~~~~~~~~~~~i~lvDtpG~~~~~---~~~~~~~~~~l~~i~~aD~il~Vvd~~~~------------- 164 (359)
.++|...+... ++....+..++||||.++-- ..|. +....+... ---++++|||....
T Consensus 97 LF~tk~dqv~~~ie-k~~~~~~~~liDTPGQIE~FtWSAsGs-IIte~lass-~ptvv~YvvDt~rs~~p~tFMSNMlYA 173 (366)
T KOG1532|consen 97 LFATKFDQVIELIE-KRAEEFDYVLIDTPGQIEAFTWSASGS-IITETLASS-FPTVVVYVVDTPRSTSPTTFMSNMLYA 173 (366)
T ss_pred HHHHHHHHHHHHHH-HhhcccCEEEEcCCCceEEEEecCCcc-chHhhHhhc-CCeEEEEEecCCcCCCchhHHHHHHHH
Confidence 11111111111 11123468999999997421 1122 222333332 23568899997552
Q ss_pred --------ccEEEeCCcccCCcchHHHHhhhhhccHHHHHHHHHH-------------------HhhhccccccchhhHH
Q 018241 165 --------NDIVHVNGKVDPKSDVDVINLELVFSDLDQIEKRMEK-------------------LKKGKAKDSQSKLKED 217 (359)
Q Consensus 165 --------~~v~~v~nk~d~~~~~~~i~~el~~~d~~~l~~~~~~-------------------~~~~~~~~~~Sa~~~~ 217 (359)
-|.+.+.||.|.... +...+ .+.|.+.....++. +....+..++|+..|.
T Consensus 174 cSilyktklp~ivvfNK~Dv~d~-~fa~e--Wm~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~~lrtv~VSs~tG~ 250 (366)
T KOG1532|consen 174 CSILYKTKLPFIVVFNKTDVSDS-EFALE--WMTDFEAFQEALNEAESSYMSNLTRSMSLMLEEFYRSLRTVGVSSVTGE 250 (366)
T ss_pred HHHHHhccCCeEEEEeccccccc-HHHHH--HHHHHHHHHHHHHhhccchhHHhhhhHHHHHHHHHhhCceEEEecccCC
Confidence 257899999996632 11111 12222222222221 1111122578899999
Q ss_pred HHHHHHHHHHHHhcCC
Q 018241 218 AEKAALEKIQQALMDG 233 (359)
Q Consensus 218 ~~~~ll~~i~~~L~~~ 233 (359)
+..+++..+.+.+.+.
T Consensus 251 G~ddf~~av~~~vdEy 266 (366)
T KOG1532|consen 251 GFDDFFTAVDESVDEY 266 (366)
T ss_pred cHHHHHHHHHHHHHHH
Confidence 9999888888777653
No 309
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=98.34 E-value=6e-07 Score=85.01 Aligned_cols=30 Identities=33% Similarity=0.430 Sum_probs=24.9
Q ss_pred cEEEEEecCCCChhHHHHHHHhccccccCC
Q 018241 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAAN 86 (359)
Q Consensus 57 ~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~ 86 (359)
..++++|.+|||||||+|+|+|.....++.
T Consensus 162 k~~~~~G~sg~GKSTlin~l~~~~~~~~g~ 191 (287)
T cd01854 162 KTSVLVGQSGVGKSTLINALLPDLDLATGE 191 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHhchhhccccc
Confidence 579999999999999999999765554443
No 310
>KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis]
Probab=98.33 E-value=9.9e-07 Score=84.88 Aligned_cols=211 Identities=14% Similarity=0.118 Sum_probs=117.4
Q ss_pred cEEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCCCccchhcc----------ccccccccCceEEEE
Q 018241 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSG----------LSKSQKAVPASVEFV 126 (359)
Q Consensus 57 ~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~----------~~~~~~~~~~~i~lv 126 (359)
.+|||+.+-.+||||.-.+++ .+.|.+ ...|.+..++.--|+++. .--...|.+..+.++
T Consensus 38 rnigiiahidagktttteril--------y~ag~~--~s~g~vddgdtvtdfla~erergitiqsaav~fdwkg~rinli 107 (753)
T KOG0464|consen 38 RNIGIIAHIDAGKTTTTERIL--------YLAGAI--HSAGDVDDGDTVTDFLAIERERGITIQSAAVNFDWKGHRINLI 107 (753)
T ss_pred hcceeEEEecCCCchhHHHHH--------HHhhhh--hcccccCCCchHHHHHHHHHhcCceeeeeeeecccccceEeee
Confidence 379999999999999999988 333333 233444444433344322 111234567899999
Q ss_pred ecCCCcCCCCcCcchhhhHhhHHHhcccceEEeecCCCcc--EEEeCCcccCCcchHHHHhhhhhccHHHHHHHHHHHhh
Q 018241 127 DIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDND--IVHVNGKVDPKSDVDVINLELVFSDLDQIEKRMEKLKK 204 (359)
Q Consensus 127 DtpG~~~~~~~~~~~~~~~l~~i~~aD~il~Vvd~~~~~~--v~~v~nk~d~~~~~~~i~~el~~~d~~~l~~~~~~~~~ 204 (359)
||||.+++.- .....+|--|.++.|+|++.... ...|+...|.. .-+.-.+.+
T Consensus 108 dtpghvdf~l-------everclrvldgavav~dasagve~qtltvwrqadk~------------------~ip~~~fin 162 (753)
T KOG0464|consen 108 DTPGHVDFRL-------EVERCLRVLDGAVAVFDASAGVEAQTLTVWRQADKF------------------KIPAHCFIN 162 (753)
T ss_pred cCCCcceEEE-------EHHHHHHHhcCeEEEEeccCCcccceeeeehhcccc------------------CCchhhhhh
Confidence 9999998875 55667788899999999987532 11222222211 111112222
Q ss_pred hccccccchhhHHHHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHH-HHhhhhcCC-eEEEEeCCC-cccCCCC-----C
Q 018241 205 GKAKDSQSKLKEDAEKAALEKIQQALMDGKPARSVTLNDFERDSIK-QLCLLTMKP-IIYVANVAE-SDLADPG-----S 276 (359)
Q Consensus 205 ~~~~~~~Sa~~~~~~~~ll~~i~~~L~~~~~~~~~~~t~~~~e~i~-~~~~l~~kp-~~y~~nv~~-~~~~~~~-----~ 276 (359)
+++ +.+.++...++.+.+.|.-. ++ ..+++..|..-+. .+.-..+|+ ++.-||-.+ .+|..+- +
T Consensus 163 kmd------k~~anfe~avdsi~ekl~ak-~l-~l~lpi~eak~fnkg~ldil~ke~l~~ncnsndgkd~e~~plle~nd 234 (753)
T KOG0464|consen 163 KMD------KLAANFENAVDSIEEKLGAK-AL-KLQLPIGEAKGFNKGFLDILHKEKLLGNCNSNDGKDFENKPLLEKND 234 (753)
T ss_pred hhh------hhhhhhhhHHHHHHHHhCCc-eE-EEEecccccccccchHHHHHHHhhccCCCCCCccccccCCcccccCC
Confidence 333 45566667777777777322 11 1244444444453 443334444 444555433 2343210 1
Q ss_pred ChhHHHHHHHHHhcCCeEEEeeHHHHHHHcCCCHHHHHHHHHHcC
Q 018241 277 NPHVNEVMNLASDLQSGRVTISAQVEAELTELPSEERVEYLASLG 321 (359)
Q Consensus 277 ~~~~~~i~~~~~~~~~~~i~~sa~le~~l~~l~~~~~~~~l~~~~ 321 (359)
.+..+++.+... .+.+.++.++.+-+..||+++.
T Consensus 235 pel~e~~ae~kn-----------al~~qlad~~~dfad~~ldef~ 268 (753)
T KOG0464|consen 235 PELAEELAEAKN-----------ALCEQLADLDADFADKFLDEFD 268 (753)
T ss_pred HHHHHHHHHHHH-----------HHHHHHhhccHHHHHHHHHHhh
Confidence 122333333221 2677888888777778887764
No 311
>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]
Probab=98.31 E-value=1.9e-06 Score=71.50 Aligned_cols=81 Identities=19% Similarity=0.203 Sum_probs=57.7
Q ss_pred cCCcEEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCCcC
Q 018241 54 SMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVK 133 (359)
Q Consensus 54 ~~~~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~~ 133 (359)
+..++|++.|.-||||||++..|.+.+...+.+.-| -+.-.+.+.. ...+.+||+.|...
T Consensus 15 ~rEirilllGldnAGKTT~LKqL~sED~~hltpT~G----Fn~k~v~~~g----------------~f~LnvwDiGGqr~ 74 (185)
T KOG0074|consen 15 RREIRILLLGLDNAGKTTFLKQLKSEDPRHLTPTNG----FNTKKVEYDG----------------TFHLNVWDIGGQRG 74 (185)
T ss_pred cceEEEEEEecCCCcchhHHHHHccCChhhccccCC----cceEEEeecC----------------cEEEEEEecCCccc
Confidence 456899999999999999999999665543332222 2223343332 35799999999853
Q ss_pred CCCcCcchhhhHhhHHHhcccceEEeec
Q 018241 134 GASQGEGLGNKFLSHIREVDSILQVVRC 161 (359)
Q Consensus 134 ~~~~~~~~~~~~l~~i~~aD~il~Vvd~ 161 (359)
-.+ -+-++..+.|.+++|+|.
T Consensus 75 IRp-------yWsNYyenvd~lIyVIDS 95 (185)
T KOG0074|consen 75 IRP-------YWSNYYENVDGLIYVIDS 95 (185)
T ss_pred cch-------hhhhhhhccceEEEEEeC
Confidence 333 556777899999999996
No 312
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=98.30 E-value=4.1e-06 Score=78.97 Aligned_cols=27 Identities=22% Similarity=0.420 Sum_probs=22.4
Q ss_pred CcEEEEEecCCCChhHHHHHHHhcccc
Q 018241 56 SLRAGIVGLPNVGKSTLFNAVVENGKA 82 (359)
Q Consensus 56 ~~~i~ivG~pn~GKSTL~n~L~~~~~~ 82 (359)
.++|.+||.+|+|||||+|.|.+....
T Consensus 4 ~fnImVvG~sG~GKTTFIntL~~~~~~ 30 (281)
T PF00735_consen 4 NFNIMVVGESGLGKTTFINTLFNSDII 30 (281)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHTSS--
T ss_pred eEEEEEECCCCCCHHHHHHHHHhcccc
Confidence 379999999999999999999964443
No 313
>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.30 E-value=7.7e-07 Score=75.73 Aligned_cols=81 Identities=20% Similarity=0.346 Sum_probs=60.7
Q ss_pred CCcEEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCCcCC
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~~~ 134 (359)
..-|+.+.|.-|||||||++.|-....+. .. .|.+|+...+.+++ .+++-+|..|....
T Consensus 19 K~gKllFlGLDNAGKTTLLHMLKdDrl~q--hv--PTlHPTSE~l~Ig~-----------------m~ftt~DLGGH~qA 77 (193)
T KOG0077|consen 19 KFGKLLFLGLDNAGKTTLLHMLKDDRLGQ--HV--PTLHPTSEELSIGG-----------------MTFTTFDLGGHLQA 77 (193)
T ss_pred cCceEEEEeecCCchhhHHHHHccccccc--cC--CCcCCChHHheecC-----------------ceEEEEccccHHHH
Confidence 34589999999999999999997433332 33 36677777777763 56889999887432
Q ss_pred CCcCcchhhhHhhHHHhcccceEEeecCC
Q 018241 135 ASQGEGLGNKFLSHIREVDSILQVVRCFE 163 (359)
Q Consensus 135 ~~~~~~~~~~~l~~i~~aD~il~Vvd~~~ 163 (359)
. +.+...+..+|++++.||+.+
T Consensus 78 r-------r~wkdyf~~v~~iv~lvda~d 99 (193)
T KOG0077|consen 78 R-------RVWKDYFPQVDAIVYLVDAYD 99 (193)
T ss_pred H-------HHHHHHHhhhceeEeeeehhh
Confidence 2 245677788999999999965
No 314
>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=98.28 E-value=6.1e-07 Score=77.16 Aligned_cols=142 Identities=20% Similarity=0.135 Sum_probs=83.4
Q ss_pred CcEEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCCcCCC
Q 018241 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA 135 (359)
Q Consensus 56 ~~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~~~~ 135 (359)
.+|+.|+|-.++||||++.+.+ .... |.+...... .|++..-.+- ...+..+.+|||+|..++.
T Consensus 20 aiK~vivGng~VGKssmiqryC-kgif--------TkdykktIg------vdflerqi~v-~~Edvr~mlWdtagqeEfD 83 (246)
T KOG4252|consen 20 AIKFVIVGNGSVGKSSMIQRYC-KGIF--------TKDYKKTIG------VDFLERQIKV-LIEDVRSMLWDTAGQEEFD 83 (246)
T ss_pred hEEEEEECCCccchHHHHHHHh-cccc--------ccccccccc------hhhhhHHHHh-hHHHHHHHHHHhccchhHH
Confidence 4799999999999999999998 3221 222211111 0011000000 0002457899999996554
Q ss_pred CcCcchhhhHhhHHHhcccceEEeecCC-------------------CccEEEeCCcccCCcchHHHHhhhhhccHHHHH
Q 018241 136 SQGEGLGNKFLSHIREVDSILQVVRCFE-------------------DNDIVHVNGKVDPKSDVDVINLELVFSDLDQIE 196 (359)
Q Consensus 136 ~~~~~~~~~~l~~i~~aD~il~Vvd~~~-------------------~~~v~~v~nk~d~~~~~~~i~~el~~~d~~~l~ 196 (359)
. -+.+..|.|.+.++|+...+ +.|.+.+.||+|.++|-..-..| +|
T Consensus 84 a-------ItkAyyrgaqa~vLVFSTTDr~SFea~~~w~~kv~~e~~~IPtV~vqNKIDlveds~~~~~e--------vE 148 (246)
T KOG4252|consen 84 A-------ITKAYYRGAQASVLVFSTTDRYSFEATLEWYNKVQKETERIPTVFVQNKIDLVEDSQMDKGE--------VE 148 (246)
T ss_pred H-------HHHHHhccccceEEEEecccHHHHHHHHHHHHHHHHHhccCCeEEeeccchhhHhhhcchHH--------HH
Confidence 3 34466788999999998766 34678899999998775433222 22
Q ss_pred HHHHHHhhhccccccchhhHHHHHHHHHHHHHHh
Q 018241 197 KRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQAL 230 (359)
Q Consensus 197 ~~~~~~~~~~~~~~~Sa~~~~~~~~ll~~i~~~L 230 (359)
....++.+.. ...|+++.-|+...+..+.+.+
T Consensus 149 ~lak~l~~Rl--yRtSvked~NV~~vF~YLaeK~ 180 (246)
T KOG4252|consen 149 GLAKKLHKRL--YRTSVKEDFNVMHVFAYLAEKL 180 (246)
T ss_pred HHHHHhhhhh--hhhhhhhhhhhHHHHHHHHHHH
Confidence 2111122221 2356677777776666555554
No 315
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=98.24 E-value=1.1e-05 Score=77.08 Aligned_cols=77 Identities=17% Similarity=0.256 Sum_probs=46.0
Q ss_pred hhhhhccccCCcEEEEEecCCCChhHHHHHHHhccccccC---CCCc----eeccceeEEEEeCCCccchhccccccccc
Q 018241 46 RFSSASKISMSLRAGIVGLPNVGKSTLFNAVVENGKAQAA---NFPF----CTIEPNVGIVAVPDPRLHVLSGLSKSQKA 118 (359)
Q Consensus 46 ~~~~~~~~~~~~~i~ivG~pn~GKSTL~n~L~~~~~~~~~---~~p~----tT~~~~~g~~~~~~~r~~~l~~~~~~~~~ 118 (359)
..+...+..-.++|.+||..|.||||++|.|++....... +... .|.+.......+.+. .
T Consensus 13 r~~~~~k~Gi~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~-------------~ 79 (373)
T COG5019 13 RHRKLSKKGIDFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEED-------------G 79 (373)
T ss_pred HHHHHHhcCCceEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecC-------------C
Confidence 3334444456789999999999999999999976332211 1111 121222222222221 1
Q ss_pred cCceEEEEecCCCcCCC
Q 018241 119 VPASVEFVDIAGLVKGA 135 (359)
Q Consensus 119 ~~~~i~lvDtpG~~~~~ 135 (359)
...++.++||||+.++.
T Consensus 80 ~~~~l~vIDtpGfGD~i 96 (373)
T COG5019 80 FHLNLTVIDTPGFGDFI 96 (373)
T ss_pred eEEEEEEeccCCccccc
Confidence 24579999999997654
No 316
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=98.22 E-value=8.3e-07 Score=81.70 Aligned_cols=58 Identities=17% Similarity=0.163 Sum_probs=30.5
Q ss_pred eEEEEecCCCcCCCCcCcchhhhHhhHHH--hcccceEEeecCC---------------------CccEEEeCCcccCCc
Q 018241 122 SVEFVDIAGLVKGASQGEGLGNKFLSHIR--EVDSILQVVRCFE---------------------DNDIVHVNGKVDPKS 178 (359)
Q Consensus 122 ~i~lvDtpG~~~~~~~~~~~~~~~l~~i~--~aD~il~Vvd~~~---------------------~~~v~~v~nk~d~~~ 178 (359)
.+.++||||+++.-... ..+..+...+. ..=++++++|+.. +-|.+.++||+|.+.
T Consensus 92 ~y~l~DtPGQiElf~~~-~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s~~L~s~s~~~~~~lP~vnvlsK~Dl~~ 170 (238)
T PF03029_consen 92 DYLLFDTPGQIELFTHS-DSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVSSLLLSLSIMLRLELPHVNVLSKIDLLS 170 (238)
T ss_dssp SEEEEE--SSHHHHHHS-HHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHHHHHHHHHHHHHHTSEEEEEE--GGGS-
T ss_pred cEEEEeCCCCEEEEEec-hhHHHHHHHHhhhcceEEEEEEecccccChhhHHHHHHHHHHHHhhCCCCEEEeeeccCccc
Confidence 69999999997543211 12223333333 2346789999765 236788999999886
Q ss_pred ch
Q 018241 179 DV 180 (359)
Q Consensus 179 ~~ 180 (359)
+.
T Consensus 171 ~~ 172 (238)
T PF03029_consen 171 KY 172 (238)
T ss_dssp HH
T ss_pred ch
Confidence 44
No 317
>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]
Probab=98.20 E-value=3.2e-06 Score=84.68 Aligned_cols=112 Identities=18% Similarity=0.213 Sum_probs=65.8
Q ss_pred CcEEEEEecCCCChhHHHHHHHhccccccCCCCce-------ecc--ceeEEEEeCCC---c-----cchhccccccccc
Q 018241 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFC-------TIE--PNVGIVAVPDP---R-----LHVLSGLSKSQKA 118 (359)
Q Consensus 56 ~~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~t-------T~~--~~~g~~~~~~~---r-----~~~l~~~~~~~~~ 118 (359)
.+.+.++|+.++|||||+-.|+ -....++...-. +.. .....+.++.. | .+.-...|.+.
T Consensus 177 ~l~lvv~GhVdaGKSTLmG~lL-ydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~fes~-- 253 (603)
T KOG0458|consen 177 HLNLVVLGHVDAGKSTLMGHLL-YDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWFESK-- 253 (603)
T ss_pred ceEEEEEeccccchhhhhhHHH-HHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEEecC--
Confidence 3689999999999999999987 332222100000 000 00011111110 0 00011122222
Q ss_pred cCceEEEEecCCCcCCCCcCcchhhhHhhHHHhcccceEEeecCCCc------------------------cEEEeCCcc
Q 018241 119 VPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDN------------------------DIVHVNGKV 174 (359)
Q Consensus 119 ~~~~i~lvDtpG~~~~~~~~~~~~~~~l~~i~~aD~il~Vvd~~~~~------------------------~v~~v~nk~ 174 (359)
...++++|+||.-++.+ ...+.+..||+.++||||+.+. .++.++||.
T Consensus 254 -~~~~tliDaPGhkdFi~-------nmi~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrEha~llr~Lgi~qlivaiNKm 325 (603)
T KOG0458|consen 254 -SKIVTLIDAPGHKDFIP-------NMISGASQADVAVLVVDASTGEFESGFDPGGQTREHALLLRSLGISQLIVAINKM 325 (603)
T ss_pred -ceeEEEecCCCccccch-------hhhccccccceEEEEEECCcchhhhccCCCCchHHHHHHHHHcCcceEEEEeecc
Confidence 35699999999766655 4455667899999999998742 268899999
Q ss_pred cCCc
Q 018241 175 DPKS 178 (359)
Q Consensus 175 d~~~ 178 (359)
|.+.
T Consensus 326 D~V~ 329 (603)
T KOG0458|consen 326 DLVS 329 (603)
T ss_pred cccC
Confidence 9873
No 318
>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]
Probab=98.16 E-value=1.4e-05 Score=75.57 Aligned_cols=110 Identities=25% Similarity=0.347 Sum_probs=69.5
Q ss_pred CCcEEEEEecCCCChhHHHHHHHhcc-ccccCCCCc-----eeccceeEEEEeCCCccchhccccccccccCceEEEEec
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVVENG-KAQAANFPF-----CTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDI 128 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~~~~-~~~~~~~p~-----tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDt 128 (359)
.++++|+.|+--+|||||..+|..-. .+.-...|. .|.|---..+.++..+ .| | ...+-|+.|+|+
T Consensus 6 ~n~N~GiLGHvDSGKTtLarals~~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~pa--rL-----p-q~e~lq~tlvDC 77 (522)
T KOG0461|consen 6 SNLNLGILGHVDSGKTTLARALSELGSTAAFDKHPQSTERGITLDLGFSTMTVLSPA--RL-----P-QGEQLQFTLVDC 77 (522)
T ss_pred ceeeeeeEeeccCchHHHHHHHHhhccchhhccCCcccccceeEeecceeeeccccc--cc-----C-ccccceeEEEeC
Confidence 34899999999999999999997321 122222222 2322222222222211 00 1 112457899999
Q ss_pred CCCcCCCCcCcchhhhHhhHHHhcccceEEeecCCCc----------------cEEEeCCcccCCcc
Q 018241 129 AGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDN----------------DIVHVNGKVDPKSD 179 (359)
Q Consensus 129 pG~~~~~~~~~~~~~~~l~~i~~aD~il~Vvd~~~~~----------------~v~~v~nk~d~~~~ 179 (359)
||.. ++.+..+....-.|+.++|+|+.... ..+.++|++|.+.+
T Consensus 78 PGHa-------sLIRtiiggaqiiDlm~lviDv~kG~QtQtAEcLiig~~~c~klvvvinkid~lpE 137 (522)
T KOG0461|consen 78 PGHA-------SLIRTIIGGAQIIDLMILVIDVQKGKQTQTAECLIIGELLCKKLVVVINKIDVLPE 137 (522)
T ss_pred CCcH-------HHHHHHHhhhheeeeeeEEEehhcccccccchhhhhhhhhccceEEEEeccccccc
Confidence 9983 35556677777789999999987742 36778899987755
No 319
>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]
Probab=98.15 E-value=4.2e-05 Score=64.43 Aligned_cols=93 Identities=16% Similarity=0.235 Sum_probs=60.7
Q ss_pred ccccCCcEEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCC
Q 018241 51 SKISMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAG 130 (359)
Q Consensus 51 ~~~~~~~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG 130 (359)
+++....+|.++|.-++|||.++..|.-+....-..+--|--|...+.+..++. ...++.|.||+|
T Consensus 4 ~kmGk~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~~pTiEDiY~~svet~rg--------------arE~l~lyDTaG 69 (198)
T KOG3883|consen 4 AKMGKVCKVVVCGMKSVGKTAILEQLLYGNHVPGTELHPTIEDIYVASVETDRG--------------AREQLRLYDTAG 69 (198)
T ss_pred hhhCcceEEEEECCccccHHHHHHHHHhccCCCCCccccchhhheeEeeecCCC--------------hhheEEEeeccc
Confidence 456677899999999999999999987343333223322333444444444331 145899999999
Q ss_pred CcCCCCcCcchhhhHhhHHHhcccceEEeecCC
Q 018241 131 LVKGASQGEGLGNKFLSHIREVDSILQVVRCFE 163 (359)
Q Consensus 131 ~~~~~~~~~~~~~~~l~~i~~aD~il~Vvd~~~ 163 (359)
+..+.. .+- ...+.-+|+.++|.+..+
T Consensus 70 lq~~~~---eLp---rhy~q~aDafVLVYs~~d 96 (198)
T KOG3883|consen 70 LQGGQQ---ELP---RHYFQFADAFVLVYSPMD 96 (198)
T ss_pred ccCchh---hhh---HhHhccCceEEEEecCCC
Confidence 976632 122 233466899999998755
No 320
>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]
Probab=98.12 E-value=0.00016 Score=65.45 Aligned_cols=71 Identities=23% Similarity=0.305 Sum_probs=44.1
Q ss_pred cccCCcEEEEEecCCCChhHHHHHHHhccccc-------cCCCCceeccceeEEEEeCCCccchhccccccccccCceEE
Q 018241 52 KISMSLRAGIVGLPNVGKSTLFNAVVENGKAQ-------AANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVE 124 (359)
Q Consensus 52 ~~~~~~~i~ivG~pn~GKSTL~n~L~~~~~~~-------~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~ 124 (359)
+..-.++|.+||.++.|||||+|.|....... .-++|.||.--..+.+...+ .+.-++.
T Consensus 42 k~GF~FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~--------------gVklklt 107 (336)
T KOG1547|consen 42 KTGFDFNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEK--------------GVKLKLT 107 (336)
T ss_pred hccCceEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeec--------------ceEEEEE
Confidence 33445899999999999999999998433322 22455554322222221111 1134689
Q ss_pred EEecCCCcCCCC
Q 018241 125 FVDIAGLVKGAS 136 (359)
Q Consensus 125 lvDtpG~~~~~~ 136 (359)
++||||+.+...
T Consensus 108 viDTPGfGDqIn 119 (336)
T KOG1547|consen 108 VIDTPGFGDQIN 119 (336)
T ss_pred EecCCCcccccC
Confidence 999999966543
No 321
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=98.12 E-value=3.3e-06 Score=80.50 Aligned_cols=98 Identities=15% Similarity=0.097 Sum_probs=55.4
Q ss_pred CceEEEEecCCCcCCCCcCcchhhhHhhHHHhcccceEEeecCC------------CccEEEeCCcccCCcchHH--HHh
Q 018241 120 PASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFE------------DNDIVHVNGKVDPKSDVDV--INL 185 (359)
Q Consensus 120 ~~~i~lvDtpG~~~~~~~~~~~~~~~l~~i~~aD~il~Vvd~~~------------~~~v~~v~nk~d~~~~~~~--i~~ 185 (359)
+..+.|+||||.... ....+..+|.++++.+... +.+.+.+.||+|....... +..
T Consensus 126 g~D~viidT~G~~~~----------e~~i~~~aD~i~vv~~~~~~~el~~~~~~l~~~~~ivv~NK~Dl~~~~~~~~~~~ 195 (300)
T TIGR00750 126 GYDVIIVETVGVGQS----------EVDIANMADTFVVVTIPGTGDDLQGIKAGLMEIADIYVVNKADGEGATNVTIARL 195 (300)
T ss_pred CCCEEEEeCCCCchh----------hhHHHHhhceEEEEecCCccHHHHHHHHHHhhhccEEEEEcccccchhHHHHHHH
Confidence 567999999997421 1234567888887764321 1235789999997643321 111
Q ss_pred hhhhccHHHHHHHHHHHhhh-ccccccchhhHHHHHHHHHHHHHHhc
Q 018241 186 ELVFSDLDQIEKRMEKLKKG-KAKDSQSKLKEDAEKAALEKIQQALM 231 (359)
Q Consensus 186 el~~~d~~~l~~~~~~~~~~-~~~~~~Sa~~~~~~~~ll~~i~~~L~ 231 (359)
++. .++..+ ..+.... .....+||+.+.++.++++.+.+++.
T Consensus 196 ~~~-~~l~~l---~~~~~~~~~~v~~iSA~~g~Gi~~L~~~i~~~~~ 238 (300)
T TIGR00750 196 MLA-LALEEI---RRREDGWRPPVLTTSAVEGRGIDELWDAIEEHKT 238 (300)
T ss_pred HHH-HHHhhc---cccccCCCCCEEEEEccCCCCHHHHHHHHHHHHH
Confidence 100 011100 0000000 01146899999999999998888763
No 322
>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.11 E-value=1.3e-05 Score=66.42 Aligned_cols=84 Identities=24% Similarity=0.234 Sum_probs=56.6
Q ss_pred CcEEEEEecCCCChhHHHHHHHhccccccCCCCcee-ccceeEEEEeCCCccchhccccccccccCceEEEEecCCCcCC
Q 018241 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCT-IEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (359)
Q Consensus 56 ~~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT-~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~~~ 134 (359)
-++-.|||.-++|||.|+..++.+... ++.|.|. .+--...+.+.+.+ .++++|||+|..++
T Consensus 11 ifkyiiigdmgvgkscllhqftekkfm--adcphtigvefgtriievsgqk---------------iklqiwdtagqerf 73 (215)
T KOG0097|consen 11 IFKYIIIGDMGVGKSCLLHQFTEKKFM--ADCPHTIGVEFGTRIIEVSGQK---------------IKLQIWDTAGQERF 73 (215)
T ss_pred eEEEEEEccccccHHHHHHHHHHHHHh--hcCCcccceecceeEEEecCcE---------------EEEEEeecccHHHH
Confidence 368889999999999999999944332 2444331 11112233443322 46899999999655
Q ss_pred CCcCcchhhhHhhHHHhcccceEEeecCC
Q 018241 135 ASQGEGLGNKFLSHIREVDSILQVVRCFE 163 (359)
Q Consensus 135 ~~~~~~~~~~~l~~i~~aD~il~Vvd~~~ 163 (359)
.. ...+..|.|-..+.|.|...
T Consensus 74 ra-------vtrsyyrgaagalmvyditr 95 (215)
T KOG0097|consen 74 RA-------VTRSYYRGAAGALMVYDITR 95 (215)
T ss_pred HH-------HHHHHhccccceeEEEEehh
Confidence 43 45677788888999999765
No 323
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=98.09 E-value=4.1e-05 Score=76.97 Aligned_cols=144 Identities=18% Similarity=0.169 Sum_probs=85.0
Q ss_pred CCcEEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCCcCC
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~~~ 134 (359)
...+|++||-.|+|||||+-+|+...... ++| +..-.+.+| .-+.|. .....++||+.-.+.
T Consensus 8 kdVRIvliGD~G~GKtSLImSL~~eef~~--~VP-----~rl~~i~IP--------advtPe---~vpt~ivD~ss~~~~ 69 (625)
T KOG1707|consen 8 KDVRIVLIGDEGVGKTSLIMSLLEEEFVD--AVP-----RRLPRILIP--------ADVTPE---NVPTSIVDTSSDSDD 69 (625)
T ss_pred cceEEEEECCCCccHHHHHHHHHhhhccc--ccc-----ccCCccccC--------CccCcC---cCceEEEecccccch
Confidence 45899999999999999999999655532 111 111112222 011111 244789999733221
Q ss_pred CCcCcchhhhHhhHHHhcccceEEeecCC-----------------------CccEEEeCCcccCCcchHHHHhhhhhcc
Q 018241 135 ASQGEGLGNKFLSHIREVDSILQVVRCFE-----------------------DNDIVHVNGKVDPKSDVDVINLELVFSD 191 (359)
Q Consensus 135 ~~~~~~~~~~~l~~i~~aD~il~Vvd~~~-----------------------~~~v~~v~nk~d~~~~~~~i~~el~~~d 191 (359)
.......++.||++++|..+.+ ..||+.+.||+|....... .+
T Consensus 70 -------~~~l~~EirkA~vi~lvyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~~-------s~ 135 (625)
T KOG1707|consen 70 -------RLCLRKEIRKADVICLVYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDNENN-------SD 135 (625)
T ss_pred -------hHHHHHHHhhcCEEEEEEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCcccccc-------ch
Confidence 1255678999999999987766 2368999999997754322 00
Q ss_pred HHHHHHHHHHHhhhccccccchhhHHHHHHHHHHHHHHh
Q 018241 192 LDQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQAL 230 (359)
Q Consensus 192 ~~~l~~~~~~~~~~~~~~~~Sa~~~~~~~~ll~~i~~~L 230 (359)
-......+..+...-.-+..||+...++.+++-...+..
T Consensus 136 e~~~~pim~~f~EiEtciecSA~~~~n~~e~fYyaqKaV 174 (625)
T KOG1707|consen 136 EVNTLPIMIAFAEIETCIECSALTLANVSELFYYAQKAV 174 (625)
T ss_pred hHHHHHHHHHhHHHHHHHhhhhhhhhhhHhhhhhhhhee
Confidence 000111111111110014678888888888876665554
No 324
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=98.05 E-value=1.1e-05 Score=79.05 Aligned_cols=107 Identities=20% Similarity=0.246 Sum_probs=67.2
Q ss_pred cEEEEEecCCCChhHHHHHHHhccccccCCCCceeccce-eEEEEeCC---Cc-cchhccccccccccCceEEEEecCCC
Q 018241 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPN-VGIVAVPD---PR-LHVLSGLSKSQKAVPASVEFVDIAGL 131 (359)
Q Consensus 57 ~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~-~g~~~~~~---~r-~~~l~~~~~~~~~~~~~i~lvDtpG~ 131 (359)
.+||||-+---|||||+..|+.++..- . ..... ...+.-.| +| +.-|++ -..-.|.+..|.++||||.
T Consensus 6 RNIAIIAHVDHGKTTLVD~LLkQSGtf-~-----~~e~v~ERvMDSnDlEkERGITILaK-nTav~~~~~~INIvDTPGH 78 (603)
T COG1217 6 RNIAIIAHVDHGKTTLVDALLKQSGTF-R-----EREEVAERVMDSNDLEKERGITILAK-NTAVNYNGTRINIVDTPGH 78 (603)
T ss_pred ceeEEEEEecCCcchHHHHHHhhcccc-c-----cccchhhhhcCccchhhhcCcEEEec-cceeecCCeEEEEecCCCc
Confidence 589999999999999999999433211 0 00000 11111111 01 011111 1223344678999999999
Q ss_pred cCCCCcCcchhhhHhhHHHhcccceEEeecCCCc----------------cEEEeCCcccCC
Q 018241 132 VKGASQGEGLGNKFLSHIREVDSILQVVRCFEDN----------------DIVHVNGKVDPK 177 (359)
Q Consensus 132 ~~~~~~~~~~~~~~l~~i~~aD~il~Vvd~~~~~----------------~v~~v~nk~d~~ 177 (359)
.++.. +...-+.-+|.++++|||++.+ ..+.|.||+|.-
T Consensus 79 ADFGG-------EVERvl~MVDgvlLlVDA~EGpMPQTrFVlkKAl~~gL~PIVVvNKiDrp 133 (603)
T COG1217 79 ADFGG-------EVERVLSMVDGVLLLVDASEGPMPQTRFVLKKALALGLKPIVVINKIDRP 133 (603)
T ss_pred CCccc-------hhhhhhhhcceEEEEEEcccCCCCchhhhHHHHHHcCCCcEEEEeCCCCC
Confidence 88876 4445556689999999999964 247788999854
No 325
>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.04 E-value=3.8e-05 Score=63.73 Aligned_cols=80 Identities=19% Similarity=0.216 Sum_probs=55.8
Q ss_pred CcEEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCCcCCC
Q 018241 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA 135 (359)
Q Consensus 56 ~~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~~~~ 135 (359)
.++|..+|..++||||++-.|.-+....+-+ |.--+...+++. +..+.+||..|..+-.
T Consensus 17 E~~ilmlGLd~aGKTtiLyKLkl~~~~~~ip----TvGFnvetVtyk-----------------N~kfNvwdvGGqd~iR 75 (180)
T KOG0071|consen 17 EMRILMLGLDAAGKTTILYKLKLGQSVTTIP----TVGFNVETVTYK-----------------NVKFNVWDVGGQDKIR 75 (180)
T ss_pred cceEEEEecccCCceehhhHHhcCCCccccc----ccceeEEEEEee-----------------eeEEeeeeccCchhhh
Confidence 5899999999999999999997333322111 112334445555 4679999999985433
Q ss_pred CcCcchhhhHhhHHHhcccceEEeecCC
Q 018241 136 SQGEGLGNKFLSHIREVDSILQVVRCFE 163 (359)
Q Consensus 136 ~~~~~~~~~~l~~i~~aD~il~Vvd~~~ 163 (359)
+ -+..+.....++++|+|+.+
T Consensus 76 p-------lWrhYy~gtqglIFV~Dsa~ 96 (180)
T KOG0071|consen 76 P-------LWRHYYTGTQGLIFVVDSAD 96 (180)
T ss_pred H-------HHHhhccCCceEEEEEeccc
Confidence 3 44455677899999999855
No 326
>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]
Probab=98.02 E-value=1.7e-05 Score=70.27 Aligned_cols=102 Identities=23% Similarity=0.281 Sum_probs=70.0
Q ss_pred CcEEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCCcCCC
Q 018241 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA 135 (359)
Q Consensus 56 ~~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~~~~ 135 (359)
.+|+.|||-.++|||+|+-..+ .........| |--|.....+.+++.+ +..+.+|||+|..+..
T Consensus 4 ~~K~VvVGDga~GKT~ll~~~t-~~~fp~~yvP-TVFdnys~~v~V~dg~--------------~v~L~LwDTAGqedYD 67 (198)
T KOG0393|consen 4 RIKCVVVGDGAVGKTCLLISYT-TNAFPEEYVP-TVFDNYSANVTVDDGK--------------PVELGLWDTAGQEDYD 67 (198)
T ss_pred eeEEEEECCCCcCceEEEEEec-cCcCcccccC-eEEccceEEEEecCCC--------------EEEEeeeecCCCcccc
Confidence 4799999999999999999998 4444333344 3335555566665333 4678999999997653
Q ss_pred CcCcchhhhHhhHHHhcccceEEeecCCC--------------------ccEEEeCCcccCCcch
Q 018241 136 SQGEGLGNKFLSHIREVDSILQVVRCFED--------------------NDIVHVNGKVDPKSDV 180 (359)
Q Consensus 136 ~~~~~~~~~~l~~i~~aD~il~Vvd~~~~--------------------~~v~~v~nk~d~~~~~ 180 (359)
. + +-+ ...++|+++.+++..+. .++++|..|.|...|.
T Consensus 68 r----l--Rpl-sY~~tdvfl~cfsv~~p~S~~nv~~kW~pEi~~~cp~vpiiLVGtk~DLr~d~ 125 (198)
T KOG0393|consen 68 R----L--RPL-SYPQTDVFLLCFSVVSPESFENVKSKWIPEIKHHCPNVPIILVGTKADLRDDP 125 (198)
T ss_pred c----c--ccc-CCCCCCEEEEEEEcCChhhHHHHHhhhhHHHHhhCCCCCEEEEeehHHhhhCH
Confidence 3 1 112 45788999888776552 4678888888866444
No 327
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.02 E-value=1.7e-06 Score=73.02 Aligned_cols=108 Identities=18% Similarity=0.179 Sum_probs=66.0
Q ss_pred cEEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCCcCCCC
Q 018241 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGAS 136 (359)
Q Consensus 57 ~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~~~~~ 136 (359)
+|...+|-+||||||++-.-| ............-+|-..-++.+...+ --...+.....+++|||+|..++.+
T Consensus 10 ikfLaLGDSGVGKTs~Ly~YT-D~~F~~qFIsTVGIDFreKrvvY~s~g------p~g~gr~~rihLQlWDTAGQERFRS 82 (219)
T KOG0081|consen 10 IKFLALGDSGVGKTSFLYQYT-DGKFNTQFISTVGIDFREKRVVYNSSG------PGGGGRGQRIHLQLWDTAGQERFRS 82 (219)
T ss_pred HHHHhhccCCCCceEEEEEec-CCcccceeEEEeecccccceEEEeccC------CCCCCcceEEEEeeeccccHHHHHH
Confidence 355667999999999998888 333222211111222222222222110 0012223345789999999987766
Q ss_pred cCcchhhhHhhHHHhcccceEEeecCC---------------------CccEEEeCCcccCCc
Q 018241 137 QGEGLGNKFLSHIREVDSILQVVRCFE---------------------DNDIVHVNGKVDPKS 178 (359)
Q Consensus 137 ~~~~~~~~~l~~i~~aD~il~Vvd~~~---------------------~~~v~~v~nk~d~~~ 178 (359)
-+-+..|+|-..++++|... +++++...||.|...
T Consensus 83 -------LTTAFfRDAMGFlLiFDlT~eqSFLnvrnWlSQL~~hAYcE~PDivlcGNK~DL~~ 138 (219)
T KOG0081|consen 83 -------LTTAFFRDAMGFLLIFDLTSEQSFLNVRNWLSQLQTHAYCENPDIVLCGNKADLED 138 (219)
T ss_pred -------HHHHHHHhhccceEEEeccchHHHHHHHHHHHHHHHhhccCCCCEEEEcCccchhh
Confidence 33445588888899999765 467899999999653
No 328
>PRK14845 translation initiation factor IF-2; Provisional
Probab=98.02 E-value=1.1e-05 Score=87.64 Aligned_cols=107 Identities=16% Similarity=0.089 Sum_probs=64.5
Q ss_pred EEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCCCccchhcccc---ccccccCceEEEEecCCCcCCC
Q 018241 59 AGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLS---KSQKAVPASVEFVDIAGLVKGA 135 (359)
Q Consensus 59 i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~---~~~~~~~~~i~lvDtpG~~~~~ 135 (359)
-||++ +||||+-+|. +..+...-..|.|++.-...++.+. ....++-+ ...+.....+.||||||...+.
T Consensus 468 ~~~~~----~KTtLLD~iR-~t~v~~~EaGGITQ~IGa~~v~~~~--~~~~~~~~~~~~~~~~~~p~i~fiDTPGhe~F~ 540 (1049)
T PRK14845 468 NGILV----HNTTLLDKIR-KTRVAKKEAGGITQHIGATEIPIDV--IKKICGPLLKLLKAEIKIPGLLFIDTPGHEAFT 540 (1049)
T ss_pred eeeec----ccccHHHHHh-CCCcccccCCCceeccceEEEEecc--cccccccccccccccCCcCcEEEEECCCcHHHH
Confidence 45554 5999999999 5455555667778554433343331 11111100 0011112359999999975432
Q ss_pred CcCcchhhhHhhHHHhcccceEEeecCC----------------CccEEEeCCcccCCcc
Q 018241 136 SQGEGLGNKFLSHIREVDSILQVVRCFE----------------DNDIVHVNGKVDPKSD 179 (359)
Q Consensus 136 ~~~~~~~~~~l~~i~~aD~il~Vvd~~~----------------~~~v~~v~nk~d~~~~ 179 (359)
. ......+.+|++++|+|+++ +.+++.+.||+|...+
T Consensus 541 ~-------lr~~g~~~aDivlLVVDa~~Gi~~qT~e~I~~lk~~~iPiIVViNKiDL~~~ 593 (1049)
T PRK14845 541 S-------LRKRGGSLADLAVLVVDINEGFKPQTIEAINILRQYKTPFVVAANKIDLIPG 593 (1049)
T ss_pred H-------HHHhhcccCCEEEEEEECcccCCHhHHHHHHHHHHcCCCEEEEEECCCCccc
Confidence 2 11233467999999999976 2368899999997643
No 329
>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]
Probab=98.01 E-value=2.2e-05 Score=80.06 Aligned_cols=123 Identities=20% Similarity=0.229 Sum_probs=76.9
Q ss_pred cccCCcEEEEEecCCCChhHHHHHHHhccccccCCCCceec--------cceeEEEEeCC--Cc----------------
Q 018241 52 KISMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTI--------EPNVGIVAVPD--PR---------------- 105 (359)
Q Consensus 52 ~~~~~~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~--------~~~~g~~~~~~--~r---------------- 105 (359)
..+..+||+|.|.+|+||||++||++ .+...++....||- +...+..-.++ +.
T Consensus 105 l~r~~mKV~ifGrts~GKSt~iNAmL-~~klLP~g~gh~TncF~~VegadG~e~vl~~~~s~ek~d~~ti~~~~haL~~~ 183 (749)
T KOG0448|consen 105 LARRHMKVAIFGRTSAGKSTVINAML-HKKLLPSGIGHTTNCFLEVEGADGAEAVLATEGSEEKIDMKTINQLAHALKPD 183 (749)
T ss_pred HhhcccEEEEeCCCCCcHHHHHHHHH-HHhhCcccccccceeeeeecccCCcceeeccCCCcccccHHHHhHHHHhcCcc
Confidence 33456899999999999999999999 55444444444541 11111211121 10
Q ss_pred ----cchhcccccccc---ccCceEEEEecCCCcCCCCcCcchhhhHhhHHHhcccceEEeecCC---------------
Q 018241 106 ----LHVLSGLSKSQK---AVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFE--------------- 163 (359)
Q Consensus 106 ----~~~l~~~~~~~~---~~~~~i~lvDtpG~~~~~~~~~~~~~~~l~~i~~aD~il~Vvd~~~--------------- 163 (359)
...+..+|.|.+ .....+.++|.||+.-... +.....+...++|+.++|+.+-.
T Consensus 184 ~~~~~~sLlrV~~p~~~csLLrnDivliDsPGld~~se----~tswid~~cldaDVfVlV~NaEntlt~sek~Ff~~vs~ 259 (749)
T KOG0448|consen 184 KDLGAGSLLRVFWPDDKCSLLRNDIVLIDSPGLDVDSE----LTSWIDSFCLDADVFVLVVNAENTLTLSEKQFFHKVSE 259 (749)
T ss_pred cccCcceEEEEEecCccchhhhccceeccCCCCCCchh----hhHHHHHHhhcCCeEEEEecCccHhHHHHHHHHHHhhc
Confidence 111223455543 3344799999999954332 23355677889999999998744
Q ss_pred -CccEEEeCCcccCCcc
Q 018241 164 -DNDIVHVNGKVDPKSD 179 (359)
Q Consensus 164 -~~~v~~v~nk~d~~~~ 179 (359)
.+.+..+.|+.|...+
T Consensus 260 ~KpniFIlnnkwDasas 276 (749)
T KOG0448|consen 260 EKPNIFILNNKWDASAS 276 (749)
T ss_pred cCCcEEEEechhhhhcc
Confidence 2346667778887765
No 330
>COG1162 Predicted GTPases [General function prediction only]
Probab=98.01 E-value=6e-06 Score=77.56 Aligned_cols=27 Identities=33% Similarity=0.421 Sum_probs=22.6
Q ss_pred cEEEEEecCCCChhHHHHHHHhccccc
Q 018241 57 LRAGIVGLPNVGKSTLFNAVVENGKAQ 83 (359)
Q Consensus 57 ~~i~ivG~pn~GKSTL~n~L~~~~~~~ 83 (359)
-..+++|.+|||||||+|+|.+.....
T Consensus 165 ~~svl~GqSGVGKSSLiN~L~p~~~~~ 191 (301)
T COG1162 165 KITVLLGQSGVGKSTLINALLPELNQK 191 (301)
T ss_pred CeEEEECCCCCcHHHHHHhhCchhhhh
Confidence 378999999999999999999754443
No 331
>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]
Probab=98.00 E-value=2.6e-05 Score=79.13 Aligned_cols=102 Identities=25% Similarity=0.344 Sum_probs=69.5
Q ss_pred cEEEEEecCCCChhHHHHHHHhccccccC-------CC---------CceeccceeEEEEeCCCccchhccccccccccC
Q 018241 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAA-------NF---------PFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVP 120 (359)
Q Consensus 57 ~~i~ivG~pn~GKSTL~n~L~~~~~~~~~-------~~---------p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~ 120 (359)
.+||++|+=..|||+|+..|.++.....+ .| -+|++..+...+-..|. +...
T Consensus 129 rnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~------------~~KS 196 (971)
T KOG0468|consen 129 RNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDS------------KGKS 196 (971)
T ss_pred EEEEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecC------------cCce
Confidence 58999999999999999999854332110 00 11222222222222221 1123
Q ss_pred ceEEEEecCCCcCCCCcCcchhhhHhhHHHhcccceEEeecCCC----------------ccEEEeCCcccCC
Q 018241 121 ASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFED----------------NDIVHVNGKVDPK 177 (359)
Q Consensus 121 ~~i~lvDtpG~~~~~~~~~~~~~~~l~~i~~aD~il~Vvd~~~~----------------~~v~~v~nk~d~~ 177 (359)
.-++++||||.+.+.. +....++.+|++++|+|+.++ .+++.++||+|.+
T Consensus 197 ~l~nilDTPGHVnF~D-------E~ta~l~~sDgvVlvvDv~EGVmlntEr~ikhaiq~~~~i~vviNKiDRL 262 (971)
T KOG0468|consen 197 YLMNILDTPGHVNFSD-------ETTASLRLSDGVVLVVDVAEGVMLNTERIIKHAIQNRLPIVVVINKVDRL 262 (971)
T ss_pred eeeeeecCCCcccchH-------HHHHHhhhcceEEEEEEcccCceeeHHHHHHHHHhccCcEEEEEehhHHH
Confidence 3588999999997766 777888999999999999884 3578899999854
No 332
>KOG2486 consensus Predicted GTPase [General function prediction only]
Probab=97.99 E-value=2.3e-05 Score=72.27 Aligned_cols=57 Identities=30% Similarity=0.184 Sum_probs=42.0
Q ss_pred CCcEEEEEecCCCChhHHHHHHHhccc-cc-cCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCC
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVVENGK-AQ-AANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGL 131 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~~~~~-~~-~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~ 131 (359)
..+.++++|.+|+|||||+|.++.... +. .+..++-|+..+.-.+ +..+.++|.||+
T Consensus 135 ~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~Tq~in~f~v--------------------~~~~~~vDlPG~ 193 (320)
T KOG2486|consen 135 KRPELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNGKTQAINHFHV--------------------GKSWYEVDLPGY 193 (320)
T ss_pred CCceeeeecCCcccHHHHHhhhhhhhhhhhhcCCCCccceeeeeeec--------------------cceEEEEecCCc
Confidence 348999999999999999999984333 22 3337777765554433 356999999995
No 333
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=97.98 E-value=3.2e-05 Score=69.57 Aligned_cols=157 Identities=13% Similarity=0.115 Sum_probs=76.5
Q ss_pred CCcEEEEEecCCCChhHHHHHHHhccc-----cccCCCCceeccce------eEEEEeCCCccc-----hhccccccccc
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVVENGK-----AQAANFPFCTIEPN------VGIVAVPDPRLH-----VLSGLSKSQKA 118 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~~~~~-----~~~~~~p~tT~~~~------~g~~~~~~~r~~-----~l~~~~~~~~~ 118 (359)
..+.|+++|++|+|||||++++..... +.+.+-++.+.|.. ...+...+.... .+.........
T Consensus 21 ~~~~i~~~G~~gsGKTTli~~l~~~~~~~~~v~v~~~~~~~~~D~~~~~~~~~~~~~l~~gcic~~~~~~~~~~l~~~~~ 100 (207)
T TIGR00073 21 GLVVLNFMSSPGSGKTTLIEKLIDNLKDEVKIAVIEGDVITKFDAERLRKYGAPAIQINTGKECHLDAHMVAHALEDLPL 100 (207)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHHhcCCeEEEEECCCCCcccHHHHHHcCCcEEEEcCCCcccCChHHHHHHHHHhcc
Confidence 457899999999999999999984311 11111122222211 011122111100 00011110001
Q ss_pred cCceEEEEecCCCcCCCCcCcchhhhHhhHHHhcccceEEeecCCCc------------cEEEeCCcccCCcchHHHHhh
Q 018241 119 VPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDN------------DIVHVNGKVDPKSDVDVINLE 186 (359)
Q Consensus 119 ~~~~i~lvDtpG~~~~~~~~~~~~~~~l~~i~~aD~il~Vvd~~~~~------------~v~~v~nk~d~~~~~~~i~~e 186 (359)
.+..+.+++|.|...... .+ . ...+.-+.|+|+.+.. +.+.+.||.|.......-
T Consensus 101 ~~~d~IiIEt~G~l~~~~-------~~-~--~~~~~~i~Vvd~~~~d~~~~~~~~~~~~a~iiv~NK~Dl~~~~~~~--- 167 (207)
T TIGR00073 101 DDIDLLFIENVGNLVCPA-------DF-D--LGEHMRVVLLSVTEGDDKPLKYPGMFKEADLIVINKADLAEAVGFD--- 167 (207)
T ss_pred CCCCEEEEecCCCcCCCc-------cc-c--cccCeEEEEEecCcccchhhhhHhHHhhCCEEEEEHHHccccchhh---
Confidence 134689999999321111 11 0 1123344677765432 247888999976421110
Q ss_pred hhhccHHHHHHHHHHHhhhccccccchhhHHHHHHHHHHHHHH
Q 018241 187 LVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQA 229 (359)
Q Consensus 187 l~~~d~~~l~~~~~~~~~~~~~~~~Sa~~~~~~~~ll~~i~~~ 229 (359)
...+...+...........+||+++.++.++++.+.++
T Consensus 168 -----~~~~~~~l~~~~~~~~i~~~Sa~~g~gv~~l~~~i~~~ 205 (207)
T TIGR00073 168 -----VEKMKADAKKINPEAEIILMSLKTGEGLDEWLEFLEGQ 205 (207)
T ss_pred -----HHHHHHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 00111111111111222567899999999998888764
No 334
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.97 E-value=3.9e-05 Score=73.24 Aligned_cols=123 Identities=21% Similarity=0.269 Sum_probs=73.2
Q ss_pred cEEEEEecCCCChhHHHHHHHhcccc--ccCCCCceeccceeEEEEeCCCc--------------cchhcc---------
Q 018241 57 LRAGIVGLPNVGKSTLFNAVVENGKA--QAANFPFCTIEPNVGIVAVPDPR--------------LHVLSG--------- 111 (359)
Q Consensus 57 ~~i~ivG~pn~GKSTL~n~L~~~~~~--~~~~~p~tT~~~~~g~~~~~~~r--------------~~~l~~--------- 111 (359)
+-|.++|.=..||||++|.|+.+... .+++-|.| +.-...+.-++++ +..|..
T Consensus 59 Pmill~GqyStGKTtfi~yLle~dypg~riGpEPTt--d~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~aflnRf 136 (532)
T KOG1954|consen 59 PMILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPTT--DRFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGNAFLNRF 136 (532)
T ss_pred ceEEEEeccccchhHHHHHHHhCCCCccccCCCCCc--ceeEEEEecCcccccCCceeeecCCCchhhhhhhHHHHHHHH
Confidence 56999999999999999999965543 34444422 2333333222211 111111
Q ss_pred -ccccccccCceEEEEecCCCcCCCCcCcchh---hhHhh-HHHhcccceEEeecCC-----------------CccEEE
Q 018241 112 -LSKSQKAVPASVEFVDIAGLVKGASQGEGLG---NKFLS-HIREVDSILQVVRCFE-----------------DNDIVH 169 (359)
Q Consensus 112 -~~~~~~~~~~~i~lvDtpG~~~~~~~~~~~~---~~~l~-~i~~aD~il~Vvd~~~-----------------~~~v~~ 169 (359)
|.+-+.-+-.++.+|||||+..+..+.-..+ +..++ .+..||.|+++.|+.. ++.+-+
T Consensus 137 ~csqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf~~vi~aLkG~EdkiRV 216 (532)
T KOG1954|consen 137 MCSQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFKRVIDALKGHEDKIRV 216 (532)
T ss_pred HHhcCChhhhhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHHHHHHHHHhhCCcceeEE
Confidence 2222222234799999999987655421111 11222 2467999999999765 234678
Q ss_pred eCCcccCCcchH
Q 018241 170 VNGKVDPKSDVD 181 (359)
Q Consensus 170 v~nk~d~~~~~~ 181 (359)
|+||.|.++..+
T Consensus 217 VLNKADqVdtqq 228 (532)
T KOG1954|consen 217 VLNKADQVDTQQ 228 (532)
T ss_pred EeccccccCHHH
Confidence 899999885443
No 335
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=97.96 E-value=1.8e-05 Score=70.90 Aligned_cols=92 Identities=17% Similarity=0.214 Sum_probs=53.4
Q ss_pred ceEEEEecCCCcCCCCcCcchhhhHhhHHHhcccceEEeecCCCcc----------E--EEeCCcccCCcchHHHHhhhh
Q 018241 121 ASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDND----------I--VHVNGKVDPKSDVDVINLELV 188 (359)
Q Consensus 121 ~~i~lvDtpG~~~~~~~~~~~~~~~l~~i~~aD~il~Vvd~~~~~~----------v--~~v~nk~d~~~~~~~i~~el~ 188 (359)
....++.|.|..- . ..+...+ +|.++.|+|+.+... . +.+.||+|..+...
T Consensus 92 ~D~iiIEt~G~~l--~------~~~~~~l--~~~~i~vvD~~~~~~~~~~~~~qi~~ad~~~~~k~d~~~~~~------- 154 (199)
T TIGR00101 92 LEMVFIESGGDNL--S------ATFSPEL--ADLTIFVIDVAAGDKIPRKGGPGITRSDLLVINKIDLAPMVG------- 154 (199)
T ss_pred CCEEEEECCCCCc--c------cccchhh--hCcEEEEEEcchhhhhhhhhHhHhhhccEEEEEhhhcccccc-------
Confidence 4578899999521 1 1111122 578999999876221 1 56788888763211
Q ss_pred hccHHHHHHHHHHHhhhccccccchhhHHHHHHHHHHHHHHh
Q 018241 189 FSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQAL 230 (359)
Q Consensus 189 ~~d~~~l~~~~~~~~~~~~~~~~Sa~~~~~~~~ll~~i~~~L 230 (359)
.+++.+......+....+...+|++++.++.++++.+.+++
T Consensus 155 -~~~~~~~~~~~~~~~~~~i~~~Sa~~g~gi~el~~~i~~~~ 195 (199)
T TIGR00101 155 -ADLGVMERDAKKMRGEKPFIFTNLKTKEGLDTVIDWIEHYA 195 (199)
T ss_pred -ccHHHHHHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 11122222222222222225789999999999998887665
No 336
>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.93 E-value=6.7e-05 Score=72.28 Aligned_cols=33 Identities=24% Similarity=0.360 Sum_probs=27.4
Q ss_pred hhhhccccCCcEEEEEecCCCChhHHHHHHHhc
Q 018241 47 FSSASKISMSLRAGIVGLPNVGKSTLFNAVVEN 79 (359)
Q Consensus 47 ~~~~~~~~~~~~i~ivG~pn~GKSTL~n~L~~~ 79 (359)
.+...+..-.+++.++|..|.|||||+|.|.+.
T Consensus 12 ~r~~~KkG~~ftlmvvG~sGlGKsTfiNsLf~~ 44 (366)
T KOG2655|consen 12 HRKSVKKGFDFTLMVVGESGLGKSTFINSLFLT 44 (366)
T ss_pred HHHHHhcCCceEEEEecCCCccHHHHHHHHHhh
Confidence 445555556699999999999999999999965
No 337
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=97.91 E-value=3.8e-05 Score=75.04 Aligned_cols=140 Identities=20% Similarity=0.176 Sum_probs=95.1
Q ss_pred cEEEEEecCCCChhHHHHHHHhccc--cccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCCcCC
Q 018241 57 LRAGIVGLPNVGKSTLFNAVVENGK--AQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (359)
Q Consensus 57 ~~i~ivG~pn~GKSTL~n~L~~~~~--~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~~~ 134 (359)
|.|+..|+---|||||+.+++|... .+-...-|+|+|......+.++ ..+.|+|+||..++
T Consensus 1 mii~t~GhidHgkT~L~~altg~~~d~l~EekKRG~TiDlg~~y~~~~d-----------------~~~~fIDvpgh~~~ 63 (447)
T COG3276 1 MIIGTAGHIDHGKTTLLKALTGGVTDRLPEEKKRGITIDLGFYYRKLED-----------------GVMGFIDVPGHPDF 63 (447)
T ss_pred CeEEEeeeeeccchhhhhhhcccccccchhhhhcCceEeeeeEeccCCC-----------------CceEEeeCCCcHHH
Confidence 4578889989999999999996433 3344566788777666665554 35999999999755
Q ss_pred CCcCcchhhhHhhHHHhcccceEEeecCCCc-----------------cEEEeCCcccCCcchH--HHHhhhhhccHHHH
Q 018241 135 ASQGEGLGNKFLSHIREVDSILQVVRCFEDN-----------------DIVHVNGKVDPKSDVD--VINLELVFSDLDQI 195 (359)
Q Consensus 135 ~~~~~~~~~~~l~~i~~aD~il~Vvd~~~~~-----------------~v~~v~nk~d~~~~~~--~i~~el~~~d~~~l 195 (359)
.+ ..+..+.-.|.+++||++.+.. ..+.|++|+|...+.. ...+++ +.++.
T Consensus 64 i~-------~miag~~~~d~alLvV~~deGl~~qtgEhL~iLdllgi~~giivltk~D~~d~~r~e~~i~~I-l~~l~-- 133 (447)
T COG3276 64 IS-------NLLAGLGGIDYALLVVAADEGLMAQTGEHLLILDLLGIKNGIIVLTKADRVDEARIEQKIKQI-LADLS-- 133 (447)
T ss_pred HH-------HHHhhhcCCceEEEEEeCccCcchhhHHHHHHHHhcCCCceEEEEeccccccHHHHHHHHHHH-Hhhcc--
Confidence 44 5566667789999999996632 3477889998775431 111110 11111
Q ss_pred HHHHHHHhhhccccccchhhHHHHHHHHHHHHHHh
Q 018241 196 EKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQAL 230 (359)
Q Consensus 196 ~~~~~~~~~~~~~~~~Sa~~~~~~~~ll~~i~~~L 230 (359)
+.. ++-+..|++.++++.+|-+++.+.+
T Consensus 134 ------l~~-~~i~~~s~~~g~GI~~Lk~~l~~L~ 161 (447)
T COG3276 134 ------LAN-AKIFKTSAKTGRGIEELKNELIDLL 161 (447)
T ss_pred ------ccc-ccccccccccCCCHHHHHHHHHHhh
Confidence 111 1114678899999999999988888
No 338
>PTZ00099 rab6; Provisional
Probab=97.88 E-value=2.6e-05 Score=68.38 Aligned_cols=95 Identities=18% Similarity=0.128 Sum_probs=62.6
Q ss_pred ceEEEEecCCCcCCCCcCcchhhhHhhHHHhcccceEEeecCCC--------------------ccEEEeCCcccCCcch
Q 018241 121 ASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFED--------------------NDIVHVNGKVDPKSDV 180 (359)
Q Consensus 121 ~~i~lvDtpG~~~~~~~~~~~~~~~l~~i~~aD~il~Vvd~~~~--------------------~~v~~v~nk~d~~~~~ 180 (359)
.++.||||||..++.. .....++.||++++|+|+++. .+++.+.||+|.....
T Consensus 29 v~l~iwDt~G~e~~~~-------~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~~~~~piilVgNK~DL~~~~ 101 (176)
T PTZ00099 29 VRLQLWDTAGQERFRS-------LIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNERGKDVIIALVGNKTDLGDLR 101 (176)
T ss_pred EEEEEEECCChHHhhh-------ccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECccccccc
Confidence 5799999999965544 223456899999999998772 2467899999965321
Q ss_pred HHHHhhhhhccHHHHHHHHHHHhhhccccccchhhHHHHHHHHHHHHHHhcC
Q 018241 181 DVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMD 232 (359)
Q Consensus 181 ~~i~~el~~~d~~~l~~~~~~~~~~~~~~~~Sa~~~~~~~~ll~~i~~~L~~ 232 (359)
. +.. +.......... .....+||+.+.++.++++.+.+.+++
T Consensus 102 ~-v~~-------~e~~~~~~~~~--~~~~e~SAk~g~nV~~lf~~l~~~l~~ 143 (176)
T PTZ00099 102 K-VTY-------EEGMQKAQEYN--TMFHETSAKAGHNIKVLFKKIAAKLPN 143 (176)
T ss_pred C-CCH-------HHHHHHHHHcC--CEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 1 111 11111111111 111468999999999999999999975
No 339
>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.86 E-value=2.2e-05 Score=65.45 Aligned_cols=141 Identities=20% Similarity=0.275 Sum_probs=84.9
Q ss_pred CCcEEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCCcCC
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~~~ 134 (359)
..++|-++|.-|+||+|++-.+--...... .| |+.-+...+++. +-.+.+||..|...-
T Consensus 17 ~e~rililgldGaGkttIlyrlqvgevvtt--kP--tigfnve~v~yK-----------------NLk~~vwdLggqtSi 75 (182)
T KOG0072|consen 17 REMRILILGLDGAGKTTILYRLQVGEVVTT--KP--TIGFNVETVPYK-----------------NLKFQVWDLGGQTSI 75 (182)
T ss_pred cceEEEEeeccCCCeeEEEEEcccCccccc--CC--CCCcCccccccc-----------------cccceeeEccCcccc
Confidence 347999999999999999877752333221 11 111223333333 345899999888544
Q ss_pred CCcCcchhhhHhhHHHhcccceEEeecCCCc---------------------cEEEeCCcccCCcchHHHHhhhh-hccH
Q 018241 135 ASQGEGLGNKFLSHIREVDSILQVVRCFEDN---------------------DIVHVNGKVDPKSDVDVINLELV-FSDL 192 (359)
Q Consensus 135 ~~~~~~~~~~~l~~i~~aD~il~Vvd~~~~~---------------------~v~~v~nk~d~~~~~~~i~~el~-~~d~ 192 (359)
++ -+.....+.|++++|||.++.+ -+..+.||.|---. ...+|.. .-.+
T Consensus 76 rP-------yWRcYy~dt~avIyVVDssd~dris~a~~el~~mL~E~eLq~a~llv~anKqD~~~~--~t~~E~~~~L~l 146 (182)
T KOG0072|consen 76 RP-------YWRCYYADTDAVIYVVDSSDRDRISIAGVELYSMLQEEELQHAKLLVFANKQDYSGA--LTRSEVLKMLGL 146 (182)
T ss_pred cH-------HHHHHhcccceEEEEEeccchhhhhhhHHHHHHHhccHhhcCceEEEEeccccchhh--hhHHHHHHHhCh
Confidence 44 4556668899999999998843 24567788874421 2222211 1222
Q ss_pred HHHHHHHHHHhhhccccccchhhHHHHHHHHHHHHHHhc
Q 018241 193 DQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALM 231 (359)
Q Consensus 193 ~~l~~~~~~~~~~~~~~~~Sa~~~~~~~~ll~~i~~~L~ 231 (359)
..+.++. +. ....||..+.+++..++-+...|.
T Consensus 147 ~~Lk~r~--~~----Iv~tSA~kg~Gld~~~DWL~~~l~ 179 (182)
T KOG0072|consen 147 QKLKDRI--WQ----IVKTSAVKGEGLDPAMDWLQRPLK 179 (182)
T ss_pred HHHhhhe--eE----EEeeccccccCCcHHHHHHHHHHh
Confidence 2222222 11 134678888888888887777664
No 340
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=97.81 E-value=6.8e-05 Score=70.63 Aligned_cols=25 Identities=28% Similarity=0.420 Sum_probs=22.0
Q ss_pred cCCcEEEEEecCCCChhHHHHHHHh
Q 018241 54 SMSLRAGIVGLPNVGKSTLFNAVVE 78 (359)
Q Consensus 54 ~~~~~i~ivG~pn~GKSTL~n~L~~ 78 (359)
....-|+|+|.||||||||++.+.+
T Consensus 102 ~~~~~v~l~G~pGsGKTTLl~~l~~ 126 (290)
T PRK10463 102 RKQLVLNLVSSPGSGKTTLLTETLM 126 (290)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3457899999999999999998884
No 341
>PF08438 MMR_HSR1_C: GTPase of unknown function C-terminal; InterPro: IPR013646 This domain is found at the C terminus of IPR002917 from INTERPRO in archaeal and eukaryotic GTP-binding proteins. ; PDB: 1WXQ_A.
Probab=97.76 E-value=4.3e-05 Score=61.28 Aligned_cols=77 Identities=21% Similarity=0.383 Sum_probs=48.0
Q ss_pred EEeCCCcccCCCCCChhHHHHHHHHHhcCCeEEEeeHHHHHHHcC-----------------------CCHHHH------
Q 018241 263 VANVAESDLADPGSNPHVNEVMNLASDLQSGRVTISAQVEAELTE-----------------------LPSEER------ 313 (359)
Q Consensus 263 ~~nv~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~sa~le~~l~~-----------------------l~~~~~------ 313 (359)
++|+.+ .+.+ +++.+++++... +..+||+||..|..|.. |+++++
T Consensus 1 AaNK~D--~~~a--~~ni~kl~~~~~--~~~vVp~SA~aEl~Lr~a~k~g~I~Y~pGd~~F~i~~~~~l~~~q~~~Le~I 74 (109)
T PF08438_consen 1 AANKAD--LPAA--DENIEKLKEKYP--DEPVVPTSAAAELALRKAAKAGLIDYIPGDSDFEITDDDKLSDKQKKALEKI 74 (109)
T ss_dssp EEE-GG--G-S---HHHHHHHHHHHT--T-EEEEE-HHHHHHHHS-SSS----S----------------------TTHH
T ss_pred CCcccc--cccc--HhHHHHHHHhCC--CCceeeccHHHHHHHHHHHHCCCEEeCCCCCceEeecccccCHHHHHHHHHH
Confidence 468876 3333 567777776442 46799999999998874 333332
Q ss_pred HH-HHHHcCCCCchHHHHHH-HHHHhcCCeEEecCC
Q 018241 314 VE-YLASLGVSESGLGNLIR-STYSLLGLRTYFTSG 347 (359)
Q Consensus 314 ~~-~l~~~~~~~~~l~~li~-~~~~~L~li~ffT~g 347 (359)
++ ||..+| .+|++.+|+ ++|++|++|.||+|.
T Consensus 75 ~~~vl~~~g--~TGVq~aln~AVf~ll~~i~VyPVe 108 (109)
T PF08438_consen 75 RDNVLERYG--STGVQEALNRAVFDLLGMIVVYPVE 108 (109)
T ss_dssp HHHHTSSSS--S-SHHHHHHHHHHTTS-EEEEEEES
T ss_pred HHHHHHhcC--CchHHHHHHHHHHHhcCCeeEeccC
Confidence 23 666666 599999997 556999999999983
No 342
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=97.73 E-value=3.3e-05 Score=71.06 Aligned_cols=23 Identities=43% Similarity=0.677 Sum_probs=19.9
Q ss_pred CCcEEEEEecCCCChhHHHHHHH
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVV 77 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~ 77 (359)
....|||-|.||||||||+++|.
T Consensus 28 ~a~~iGiTG~PGaGKSTli~~l~ 50 (266)
T PF03308_consen 28 RAHVIGITGPPGAGKSTLIDALI 50 (266)
T ss_dssp -SEEEEEEE-TTSSHHHHHHHHH
T ss_pred CceEEEeeCCCCCcHHHHHHHHH
Confidence 45799999999999999999998
No 343
>PRK01889 GTPase RsgA; Reviewed
Probab=97.71 E-value=2.5e-05 Score=76.16 Aligned_cols=30 Identities=30% Similarity=0.450 Sum_probs=24.6
Q ss_pred CcEEEEEecCCCChhHHHHHHHhccccccC
Q 018241 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAA 85 (359)
Q Consensus 56 ~~~i~ivG~pn~GKSTL~n~L~~~~~~~~~ 85 (359)
+-+++|+|.||+|||||+|+|+|.....++
T Consensus 195 g~~~~lvG~sgvGKStLin~L~g~~~~~~G 224 (356)
T PRK01889 195 GKTVALLGSSGVGKSTLVNALLGEEVQKTG 224 (356)
T ss_pred CCEEEEECCCCccHHHHHHHHHHhccccee
Confidence 458999999999999999999975554433
No 344
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=97.67 E-value=0.00013 Score=67.91 Aligned_cols=104 Identities=23% Similarity=0.225 Sum_probs=69.7
Q ss_pred cCCcEEEEEecCCCChhHHHHHHHhcccc-----------ccC-----CCCceeccceeEEEEeCCCccchhcccccccc
Q 018241 54 SMSLRAGIVGLPNVGKSTLFNAVVENGKA-----------QAA-----NFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQK 117 (359)
Q Consensus 54 ~~~~~i~ivG~pn~GKSTL~n~L~~~~~~-----------~~~-----~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~ 117 (359)
..-.+||-||+-+-|||||..|||+ ..+ .+. .--|.|+.+. .+.+...
T Consensus 10 kphVNigtiGHvdHGKTTLtaAit~-~la~~~~~~~~~y~~id~aPeEk~rGITInta--hveyet~------------- 73 (394)
T COG0050 10 KPHVNVGTIGHVDHGKTTLTAAITT-VLAKKGGAEAKAYDQIDNAPEEKARGITINTA--HVEYETA------------- 73 (394)
T ss_pred CCeeEEEEeccccCchhhHHHHHHH-HHHhhccccccchhhhccCchHhhcCceeccc--eeEEecC-------------
Confidence 3458999999999999999999994 222 111 1224453333 3333221
Q ss_pred ccCceEEEEecCCCcCCCCcCcchhhhHhhHHHhcccceEEeecCCCc-----------------cEEEeCCcccCCcch
Q 018241 118 AVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDN-----------------DIVHVNGKVDPKSDV 180 (359)
Q Consensus 118 ~~~~~i~lvDtpG~~~~~~~~~~~~~~~l~~i~~aD~il~Vvd~~~~~-----------------~v~~v~nk~d~~~~~ 180 (359)
...+-.+|+||..+.-. ..+....+.|..++||.|.+.+ .++..+||+|.+.|.
T Consensus 74 --~rhyahVDcPGHaDYvK-------NMItgAaqmDgAILVVsA~dGpmPqTrEHiLlarqvGvp~ivvflnK~Dmvdd~ 144 (394)
T COG0050 74 --NRHYAHVDCPGHADYVK-------NMITGAAQMDGAILVVAATDGPMPQTREHILLARQVGVPYIVVFLNKVDMVDDE 144 (394)
T ss_pred --CceEEeccCCChHHHHH-------HHhhhHHhcCccEEEEEcCCCCCCcchhhhhhhhhcCCcEEEEEEecccccCcH
Confidence 24688999999854322 3333446789999999998853 367788999999876
Q ss_pred HH
Q 018241 181 DV 182 (359)
Q Consensus 181 ~~ 182 (359)
+.
T Consensus 145 el 146 (394)
T COG0050 145 EL 146 (394)
T ss_pred HH
Confidence 54
No 345
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=97.56 E-value=8.2e-05 Score=64.10 Aligned_cols=43 Identities=12% Similarity=0.166 Sum_probs=28.1
Q ss_pred CceEEEEecCCCcCCCCcCcc-hhhhHhhHHHhcccceEEeecC
Q 018241 120 PASVEFVDIAGLVKGASQGEG-LGNKFLSHIREVDSILQVVRCF 162 (359)
Q Consensus 120 ~~~i~lvDtpG~~~~~~~~~~-~~~~~l~~i~~aD~il~Vvd~~ 162 (359)
..+..|+||||+.++.+.-.. +....+...-.+|.++.|+|+.
T Consensus 86 ~~d~I~IEt~G~~~p~~~~~~~~~~~~~~~~~~~d~vv~vvDa~ 129 (158)
T cd03112 86 AFDRIVIETTGLADPGPVAQTFFMDEELAERYLLDGVITLVDAK 129 (158)
T ss_pred CCCEEEEECCCcCCHHHHHHHHhhchhhhcceeeccEEEEEEhh
Confidence 457899999999865542111 1112334556689999999973
No 346
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=97.55 E-value=8e-05 Score=69.63 Aligned_cols=23 Identities=43% Similarity=0.618 Sum_probs=21.3
Q ss_pred CCcEEEEEecCCCChhHHHHHHH
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVV 77 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~ 77 (359)
....|||-|.||||||||+.+|.
T Consensus 50 ~a~viGITG~PGaGKSTli~~L~ 72 (323)
T COG1703 50 NAHVIGITGVPGAGKSTLIEALG 72 (323)
T ss_pred CCcEEEecCCCCCchHHHHHHHH
Confidence 45799999999999999999997
No 347
>KOG3886 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=97.47 E-value=0.00011 Score=66.23 Aligned_cols=88 Identities=18% Similarity=0.135 Sum_probs=62.9
Q ss_pred CCcEEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCCcCC
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~~~ 134 (359)
+..||.++|++|+||||+=..+..+-.+.-...+|.|+|...+.+.+-+ +-.+.+||..|...+
T Consensus 3 ~~kKvlLMGrsGsGKsSmrsiiF~ny~a~D~~rlg~tidveHsh~RflG----------------nl~LnlwDcGgqe~f 66 (295)
T KOG3886|consen 3 MKKKVLLMGRSGSGKSSMRSIIFANYIARDTRRLGATIDVEHSHVRFLG----------------NLVLNLWDCGGQEEF 66 (295)
T ss_pred ccceEEEeccCCCCccccchhhhhhhhhhhhhccCCcceeeehhhhhhh----------------hheeehhccCCcHHH
Confidence 3458999999999999998887744445445678888888877765543 345889999998421
Q ss_pred CCcCcchhhhH----hhHHHhcccceEEeecCCC
Q 018241 135 ASQGEGLGNKF----LSHIREVDSILQVVRCFED 164 (359)
Q Consensus 135 ~~~~~~~~~~~----l~~i~~aD~il~Vvd~~~~ 164 (359)
- .+.+ -...++++++++|.|++.+
T Consensus 67 m------en~~~~q~d~iF~nV~vli~vFDves~ 94 (295)
T KOG3886|consen 67 M------ENYLSSQEDNIFRNVQVLIYVFDVESR 94 (295)
T ss_pred H------HHHHhhcchhhheeheeeeeeeeccch
Confidence 1 1111 1235889999999999764
No 348
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=97.46 E-value=9.5e-05 Score=70.38 Aligned_cols=155 Identities=15% Similarity=0.079 Sum_probs=78.8
Q ss_pred CCcEEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCCCccc------hh-cc---------ccccccc
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLH------VL-SG---------LSKSQKA 118 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~~r~~------~l-~~---------~~~~~~~ 118 (359)
..++..-+|.--=|||||+-+|+-...+.-.+.. .+.+..........+.+| -| ++ .|.-..+
T Consensus 5 ~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQl-a~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFsT 83 (431)
T COG2895 5 SLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQL-ASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFST 83 (431)
T ss_pred cceeEEEeccccCcchhhhhhhhhcchhhhHHHH-HHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeeccc
Confidence 4578888998888999999999843332211100 000000000000001111 01 00 1112222
Q ss_pred cCceEEEEecCCCcCCCCcCcchhhhHhhHHHhcccceEEeecCCCc-----------------cEEEeCCcccCCcchH
Q 018241 119 VPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDN-----------------DIVHVNGKVDPKSDVD 181 (359)
Q Consensus 119 ~~~~i~lvDtpG~~~~~~~~~~~~~~~l~~i~~aD~il~Vvd~~~~~-----------------~v~~v~nk~d~~~~~~ 181 (359)
...++++.||||...... ....-...||+++++||+.... .++...||+|.+.--+
T Consensus 84 ~KRkFIiADTPGHeQYTR-------NMaTGASTadlAIlLVDAR~Gvl~QTrRHs~I~sLLGIrhvvvAVNKmDLvdy~e 156 (431)
T COG2895 84 EKRKFIIADTPGHEQYTR-------NMATGASTADLAILLVDARKGVLEQTRRHSFIASLLGIRHVVVAVNKMDLVDYSE 156 (431)
T ss_pred ccceEEEecCCcHHHHhh-------hhhcccccccEEEEEEecchhhHHHhHHHHHHHHHhCCcEEEEEEeeecccccCH
Confidence 245799999999864322 1222235799999999997742 3788999999885433
Q ss_pred HHHhhhhhccHHHHHHHHHHHhhhccccccchhhHHHHH
Q 018241 182 VINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEK 220 (359)
Q Consensus 182 ~i~~el~~~d~~~l~~~~~~~~~~~~~~~~Sa~~~~~~~ 220 (359)
..-+++. .+.-.+.+.+..... ..+|+||..|.|+.
T Consensus 157 ~~F~~I~-~dy~~fa~~L~~~~~--~~IPiSAl~GDNV~ 192 (431)
T COG2895 157 EVFEAIV-ADYLAFAAQLGLKDV--RFIPISALLGDNVV 192 (431)
T ss_pred HHHHHHH-HHHHHHHHHcCCCcc--eEEechhccCCccc
Confidence 3333221 111111111111000 11688888887753
No 349
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=97.42 E-value=0.0044 Score=56.39 Aligned_cols=24 Identities=38% Similarity=0.339 Sum_probs=21.0
Q ss_pred CcEEEEEecCCCChhHHHHHHHhc
Q 018241 56 SLRAGIVGLPNVGKSTLFNAVVEN 79 (359)
Q Consensus 56 ~~~i~ivG~pn~GKSTL~n~L~~~ 79 (359)
+=-|+|+|++|||||||+|.|.+-
T Consensus 31 Ge~vaI~GpSGSGKSTLLniig~l 54 (226)
T COG1136 31 GEFVAIVGPSGSGKSTLLNLLGGL 54 (226)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcc
Confidence 347999999999999999999843
No 350
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=97.37 E-value=0.0002 Score=71.77 Aligned_cols=79 Identities=20% Similarity=0.289 Sum_probs=54.6
Q ss_pred cCCcEEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCCcC
Q 018241 54 SMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVK 133 (359)
Q Consensus 54 ~~~~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~~ 133 (359)
..++-+++||+||+|||||+..|. +.. ...|++-..|.+++-... ...++|+.+|.
T Consensus 67 PPPfIvavvGPpGtGKsTLirSlV-rr~------tk~ti~~i~GPiTvvsgK--------------~RRiTflEcp~--- 122 (1077)
T COG5192 67 PPPFIVAVVGPPGTGKSTLIRSLV-RRF------TKQTIDEIRGPITVVSGK--------------TRRITFLECPS--- 122 (1077)
T ss_pred CCCeEEEeecCCCCChhHHHHHHH-HHH------HHhhhhccCCceEEeecc--------------eeEEEEEeChH---
Confidence 345788999999999999999998 332 224555555555443211 24689999983
Q ss_pred CCCcCcchhhhHhhHHHhcccceEEeecCC
Q 018241 134 GASQGEGLGNKFLSHIREVDSILQVVRCFE 163 (359)
Q Consensus 134 ~~~~~~~~~~~~l~~i~~aD~il~Vvd~~~ 163 (359)
..+ ++.....-||++++++|+.-
T Consensus 123 Dl~-------~miDvaKIaDLVlLlIdgnf 145 (1077)
T COG5192 123 DLH-------QMIDVAKIADLVLLLIDGNF 145 (1077)
T ss_pred HHH-------HHHhHHHhhheeEEEecccc
Confidence 222 56666677999999999744
No 351
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=97.30 E-value=0.00046 Score=68.55 Aligned_cols=22 Identities=27% Similarity=0.286 Sum_probs=20.1
Q ss_pred CcEEEEEecCCCChhHHHHHHH
Q 018241 56 SLRAGIVGLPNVGKSTLFNAVV 77 (359)
Q Consensus 56 ~~~i~ivG~pn~GKSTL~n~L~ 77 (359)
+-.|+++|.+||||||+...|.
T Consensus 100 ~~vi~lvG~~GvGKTTtaaKLA 121 (429)
T TIGR01425 100 QNVIMFVGLQGSGKTTTCTKLA 121 (429)
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 4579999999999999999997
No 352
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=97.29 E-value=0.00034 Score=72.14 Aligned_cols=116 Identities=16% Similarity=0.130 Sum_probs=76.5
Q ss_pred CCcEEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCCCccchhcccc-cccc--ccCceEEEEecCCC
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLS-KSQK--AVPASVEFVDIAGL 131 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~-~~~~--~~~~~i~lvDtpG~ 131 (359)
..+-|+|+|+--+|||-|+..|. +..+.-+...|.| ...|.-.+|-..+..-...+ +..+ ..-..+.+|||||.
T Consensus 474 RSPIcCilGHVDTGKTKlld~ir-~tNVqegeaggit--qqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg~lvIdtpgh 550 (1064)
T KOG1144|consen 474 RSPICCILGHVDTGKTKLLDKIR-GTNVQEGEAGGIT--QQIGATYFPAENIREKTKELKKDAKKRLKVPGLLVIDTPGH 550 (1064)
T ss_pred CCceEEEeecccccchHHHHHhh-cccccccccccee--eeccccccchHHHHHHHHHHHhhhhhhcCCCeeEEecCCCc
Confidence 45789999999999999999999 6667777777777 55555444422111111111 1111 11235899999998
Q ss_pred cCCCCcCcchhhhHhhHHHhcccceEEeecCCC----------------ccEEEeCCcccCCcch
Q 018241 132 VKGASQGEGLGNKFLSHIREVDSILQVVRCFED----------------NDIVHVNGKVDPKSDV 180 (359)
Q Consensus 132 ~~~~~~~~~~~~~~l~~i~~aD~il~Vvd~~~~----------------~~v~~v~nk~d~~~~~ 180 (359)
..+... .++. ...||.+|+|||.-+. .++++++||+|.+-+|
T Consensus 551 EsFtnl----Rsrg---sslC~~aIlvvdImhGlepqtiESi~lLR~rktpFivALNKiDRLYgw 608 (1064)
T KOG1144|consen 551 ESFTNL----RSRG---SSLCDLAILVVDIMHGLEPQTIESINLLRMRKTPFIVALNKIDRLYGW 608 (1064)
T ss_pred hhhhhh----hhcc---ccccceEEEEeehhccCCcchhHHHHHHHhcCCCeEEeehhhhhhccc
Confidence 666541 1121 2459999999998773 4688999999977554
No 353
>KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis]
Probab=97.24 E-value=0.0014 Score=67.94 Aligned_cols=120 Identities=23% Similarity=0.184 Sum_probs=78.6
Q ss_pred cEEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCCCccchhcccc--cc----ccccCceEEEEecCC
Q 018241 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLS--KS----QKAVPASVEFVDIAG 130 (359)
Q Consensus 57 ~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~--~~----~~~~~~~i~lvDtpG 130 (359)
.+|.++-+---|||||...|. .+...++. .-.|.+.+-|.|-|...... ++ .-..+.-+.|+|+||
T Consensus 10 rn~~~vahvdhgktsladsl~-asngvis~-------rlagkirfld~redeq~rgitmkss~is~~~~~~~~nlidspg 81 (887)
T KOG0467|consen 10 RNICLVAHVDHGKTSLADSLV-ASNGVISS-------RLAGKIRFLDTREDEQTRGITMKSSAISLLHKDYLINLIDSPG 81 (887)
T ss_pred eEEEEEEEecCCccchHHHHH-hhccEech-------hhccceeeccccchhhhhceeeeccccccccCceEEEEecCCC
Confidence 478999999999999999998 44433332 22344444444433322211 00 001256799999999
Q ss_pred CcCCCCcCcchhhhHhhHHHhcccceEEeecCCCc----------------cEEEeCCcccCCcchHHHHhhhhhccHHH
Q 018241 131 LVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDN----------------DIVHVNGKVDPKSDVDVINLELVFSDLDQ 194 (359)
Q Consensus 131 ~~~~~~~~~~~~~~~l~~i~~aD~il~Vvd~~~~~----------------~v~~v~nk~d~~~~~~~i~~el~~~d~~~ 194 (359)
.+++.+ ..-++.+-+|..+++||+-+.. ..+.|+||+|.+ ..||.+.-.+.
T Consensus 82 hvdf~s-------evssas~l~d~alvlvdvvegv~~qt~~vlrq~~~~~~~~~lvinkidrl------~~el~lsp~ea 148 (887)
T KOG0467|consen 82 HVDFSS-------EVSSASRLSDGALVLVDVVEGVCSQTYAVLRQAWIEGLKPILVINKIDRL------ITELKLSPQEA 148 (887)
T ss_pred ccchhh-------hhhhhhhhcCCcEEEEeeccccchhHHHHHHHHHHccCceEEEEehhhhH------HHHHhcChHHH
Confidence 999987 6667778899999999987743 367899999843 34455555444
Q ss_pred HHH
Q 018241 195 IEK 197 (359)
Q Consensus 195 l~~ 197 (359)
++.
T Consensus 149 ~~~ 151 (887)
T KOG0467|consen 149 YEH 151 (887)
T ss_pred HHH
Confidence 333
No 354
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.15 E-value=0.00052 Score=61.31 Aligned_cols=22 Identities=27% Similarity=0.376 Sum_probs=19.8
Q ss_pred cEEEEEecCCCChhHHHHHHHh
Q 018241 57 LRAGIVGLPNVGKSTLFNAVVE 78 (359)
Q Consensus 57 ~~i~ivG~pn~GKSTL~n~L~~ 78 (359)
..|++||.+||||||.+-.|..
T Consensus 2 ~vi~lvGptGvGKTTt~aKLAa 23 (196)
T PF00448_consen 2 KVIALVGPTGVGKTTTIAKLAA 23 (196)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCchHhHHHHHHH
Confidence 4689999999999999999983
No 355
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=97.14 E-value=0.0013 Score=55.99 Aligned_cols=20 Identities=50% Similarity=0.919 Sum_probs=18.5
Q ss_pred EEEEecCCCChhHHHHHHHh
Q 018241 59 AGIVGLPNVGKSTLFNAVVE 78 (359)
Q Consensus 59 i~ivG~pn~GKSTL~n~L~~ 78 (359)
|+++|.+|+||||++..+..
T Consensus 2 i~~~G~~GsGKTt~~~~l~~ 21 (148)
T cd03114 2 IGITGVPGAGKSTLIDALIT 21 (148)
T ss_pred EEEECCCCCcHHHHHHHHHH
Confidence 78999999999999999984
No 356
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=97.14 E-value=0.0013 Score=58.03 Aligned_cols=89 Identities=20% Similarity=0.184 Sum_probs=52.3
Q ss_pred ceEEEEecCC-CcCCCCcCcchhhhHhhHHHhcc-cceEEeecCCCccE------------EEeCCcccCCcchHHHHhh
Q 018241 121 ASVEFVDIAG-LVKGASQGEGLGNKFLSHIREVD-SILQVVRCFEDNDI------------VHVNGKVDPKSDVDVINLE 186 (359)
Q Consensus 121 ~~i~lvDtpG-~~~~~~~~~~~~~~~l~~i~~aD-~il~Vvd~~~~~~v------------~~v~nk~d~~~~~~~i~~e 186 (359)
..+.|+-..| +.-..+ -++ .| .-++|+|..+.+++ +.++||.|..+..
T Consensus 97 ~Dll~iEs~GNL~~~~s----------p~L--~d~~~v~VidvteGe~~P~K~gP~i~~aDllVInK~DLa~~v------ 158 (202)
T COG0378 97 LDLLFIESVGNLVCPFS----------PDL--GDHLRVVVIDVTEGEDIPRKGGPGIFKADLLVINKTDLAPYV------ 158 (202)
T ss_pred CCEEEEecCcceecccC----------cch--hhceEEEEEECCCCCCCcccCCCceeEeeEEEEehHHhHHHh------
Confidence 3577888877 432222 111 23 66789999886542 4577888876433
Q ss_pred hhhccHHHHHHHHHHHhhhccccccchhhHHHHHHHHHHHHHH
Q 018241 187 LVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQA 229 (359)
Q Consensus 187 l~~~d~~~l~~~~~~~~~~~~~~~~Sa~~~~~~~~ll~~i~~~ 229 (359)
-.|++.......++.-.......|.+++++.+++++.+...
T Consensus 159 --~~dlevm~~da~~~np~~~ii~~n~ktg~G~~~~~~~i~~~ 199 (202)
T COG0378 159 --GADLEVMARDAKEVNPEAPIIFTNLKTGEGLDEWLRFIEPQ 199 (202)
T ss_pred --CccHHHHHHHHHHhCCCCCEEEEeCCCCcCHHHHHHHHHhh
Confidence 23444444444344333333456789999988887766544
No 357
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.11 E-value=0.00092 Score=65.37 Aligned_cols=25 Identities=20% Similarity=0.201 Sum_probs=21.7
Q ss_pred CCcEEEEEecCCCChhHHHHHHHhc
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVVEN 79 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~~~ 79 (359)
.+-.++++|.+||||||++..|.+.
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA~~ 160 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLAAR 160 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3458999999999999999999843
No 358
>KOG0469 consensus Elongation factor 2 [Translation, ribosomal structure and biogenesis]
Probab=96.95 E-value=0.0017 Score=64.52 Aligned_cols=113 Identities=20% Similarity=0.169 Sum_probs=73.4
Q ss_pred EEEEEecCCCChhHHHHHHHhccccccCCCCceecc------ceeEEEEeCCCc--------cchhccccccccccCceE
Q 018241 58 RAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIE------PNVGIVAVPDPR--------LHVLSGLSKSQKAVPASV 123 (359)
Q Consensus 58 ~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~------~~~g~~~~~~~r--------~~~l~~~~~~~~~~~~~i 123 (359)
++.+|.+---|||||-..|..++....+..+|-|+- -+..-+++...- -+.+..+-++....+.-|
T Consensus 21 NmSVIAHVDHGKSTLTDsLV~kAgIis~akaGe~Rf~DtRkDEQeR~iTIKStAISl~~e~~~~dl~~~k~~~d~~~FLi 100 (842)
T KOG0469|consen 21 NMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGETRFTDTRKDEQERGITIKSTAISLFFEMSDDDLKFIKQEGDGNGFLI 100 (842)
T ss_pred cceEEEEecCCcchhhHHHHHhhceeeecccCCccccccccchhhcceEeeeeeeeehhhhhHhHHHHhcCCCCCcceeE
Confidence 556666777799999999994444333344444431 111111221110 112333556666667789
Q ss_pred EEEecCCCcCCCCcCcchhhhHhhHHHhcccceEEeecCCCcc----------------EEEeCCcccCC
Q 018241 124 EFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDND----------------IVHVNGKVDPK 177 (359)
Q Consensus 124 ~lvDtpG~~~~~~~~~~~~~~~l~~i~~aD~il~Vvd~~~~~~----------------v~~v~nk~d~~ 177 (359)
.++|.||.+++.+ +.-+++|-.|..++|||+-+..- -+.+.||+|..
T Consensus 101 NLIDSPGHVDFSS-------EVTAALRVTDGALVVVDcv~GvCVQTETVLrQA~~ERIkPvlv~NK~DRA 163 (842)
T KOG0469|consen 101 NLIDSPGHVDFSS-------EVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAERIKPVLVMNKMDRA 163 (842)
T ss_pred EeccCCCcccchh-------hhhheeEeccCcEEEEEccCceEechHHHHHHHHHhhccceEEeehhhHH
Confidence 9999999999988 67788899999999999987532 25677888743
No 359
>PRK14737 gmk guanylate kinase; Provisional
Probab=96.78 E-value=0.0012 Score=58.56 Aligned_cols=44 Identities=23% Similarity=0.162 Sum_probs=33.7
Q ss_pred CcEEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEE
Q 018241 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIV 99 (359)
Q Consensus 56 ~~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~ 99 (359)
+.-|.|+|++|||||||.++|...........+.||+.|..|.+
T Consensus 4 ~~~ivl~GpsG~GK~tl~~~l~~~~~~~~~~v~~TTR~~r~gE~ 47 (186)
T PRK14737 4 PKLFIISSVAGGGKSTIIQALLEEHPDFLFSISCTTRAPRPGDE 47 (186)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhcCCccccccCccCCCCCCCCC
Confidence 45689999999999999999984432233456789988887754
No 360
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=96.77 E-value=0.0012 Score=55.44 Aligned_cols=40 Identities=28% Similarity=0.316 Sum_probs=28.1
Q ss_pred EEEEecCCCChhHHHHHHHhccc-cccCCCCceeccceeEE
Q 018241 59 AGIVGLPNVGKSTLFNAVVENGK-AQAANFPFCTIEPNVGI 98 (359)
Q Consensus 59 i~ivG~pn~GKSTL~n~L~~~~~-~~~~~~p~tT~~~~~g~ 98 (359)
|+|+|.+|+|||||++.|.+.-. ......+.||+.+..+.
T Consensus 2 i~i~GpsGsGKstl~~~L~~~~~~~~~~~v~~tTr~p~~~e 42 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEEFDPNFGFSVSHTTRKPRPGE 42 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhcCCccceecccccccCCCCCc
Confidence 68999999999999999994311 11234555777666553
No 361
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.76 E-value=0.0014 Score=65.04 Aligned_cols=25 Identities=20% Similarity=0.231 Sum_probs=22.0
Q ss_pred CCcEEEEEecCCCChhHHHHHHHhc
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVVEN 79 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~~~ 79 (359)
.+-.|++||.+|+||||++..|.+.
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~~ 214 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAAR 214 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3468999999999999999999854
No 362
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.75 E-value=0.0029 Score=62.08 Aligned_cols=23 Identities=22% Similarity=0.323 Sum_probs=20.9
Q ss_pred CcEEEEEecCCCChhHHHHHHHh
Q 018241 56 SLRAGIVGLPNVGKSTLFNAVVE 78 (359)
Q Consensus 56 ~~~i~ivG~pn~GKSTL~n~L~~ 78 (359)
+..|+|+|.+||||||++..|..
T Consensus 241 ~~vI~LVGptGvGKTTTiaKLA~ 263 (436)
T PRK11889 241 VQTIALIGPTGVGKTTTLAKMAW 263 (436)
T ss_pred CcEEEEECCCCCcHHHHHHHHHH
Confidence 46899999999999999999984
No 363
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=96.75 E-value=0.0013 Score=57.37 Aligned_cols=42 Identities=33% Similarity=0.357 Sum_probs=30.4
Q ss_pred cEEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEE
Q 018241 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGI 98 (359)
Q Consensus 57 ~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~ 98 (359)
..|+|+|++|||||||.+.|.+.........+.+|+.|..|.
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~~~~~~~~~~~~tr~~~~g~ 43 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEEDPNLKFSISATTRKPRPGE 43 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHccCccccccccceeeCCCCCC
Confidence 368999999999999999999543333334455777666554
No 364
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=96.74 E-value=0.00085 Score=58.82 Aligned_cols=45 Identities=31% Similarity=0.345 Sum_probs=34.7
Q ss_pred CCcEEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEE
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVA 100 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~ 100 (359)
++.-++|.|++|||||||+++|.... ..--....||+.|+.|.+.
T Consensus 3 ~G~l~vlsgPSG~GKsTl~k~L~~~~-~l~~SVS~TTR~pR~gEv~ 47 (191)
T COG0194 3 KGLLIVLSGPSGVGKSTLVKALLEDD-KLRFSVSATTRKPRPGEVD 47 (191)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhhc-CeEEEEEeccCCCCCCCcC
Confidence 45678999999999999999999544 3323455689999888653
No 365
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=96.71 E-value=0.0029 Score=60.84 Aligned_cols=23 Identities=26% Similarity=0.419 Sum_probs=20.9
Q ss_pred CcEEEEEecCCCChhHHHHHHHh
Q 018241 56 SLRAGIVGLPNVGKSTLFNAVVE 78 (359)
Q Consensus 56 ~~~i~ivG~pn~GKSTL~n~L~~ 78 (359)
+-.|+++|.+|+||||++..|.+
T Consensus 114 ~~vi~lvGpnGsGKTTt~~kLA~ 136 (318)
T PRK10416 114 PFVILVVGVNGVGKTTTIGKLAH 136 (318)
T ss_pred CeEEEEECCCCCcHHHHHHHHHH
Confidence 46899999999999999999984
No 366
>PRK14974 cell division protein FtsY; Provisional
Probab=96.71 E-value=0.0021 Score=62.18 Aligned_cols=23 Identities=22% Similarity=0.316 Sum_probs=20.2
Q ss_pred CCcEEEEEecCCCChhHHHHHHH
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVV 77 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~ 77 (359)
.+..|+++|.||+||||++..|.
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA 161 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLA 161 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHH
Confidence 35689999999999999888887
No 367
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=96.60 E-value=0.028 Score=52.25 Aligned_cols=69 Identities=19% Similarity=0.286 Sum_probs=41.2
Q ss_pred cCCcEEEEEecCCCChhHHHHHHHhcccc---ccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCC
Q 018241 54 SMSLRAGIVGLPNVGKSTLFNAVVENGKA---QAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAG 130 (359)
Q Consensus 54 ~~~~~i~ivG~pn~GKSTL~n~L~~~~~~---~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG 130 (359)
.-.++|..||-+|.|||||++.|.+...- .....|..-..++...+...+ +...+.++||.|
T Consensus 40 GF~FNilCvGETg~GKsTLmdtLFNt~f~~~p~~H~~~~V~L~~~TyelqEsn---------------vrlKLtiv~tvG 104 (406)
T KOG3859|consen 40 GFCFNILCVGETGLGKSTLMDTLFNTKFESEPSTHTLPNVKLQANTYELQESN---------------VRLKLTIVDTVG 104 (406)
T ss_pred CceEEEEEeccCCccHHHHHHHHhccccCCCCCccCCCCceeecchhhhhhcC---------------eeEEEEEEeecc
Confidence 34589999999999999999999943321 111222222222211111111 124689999999
Q ss_pred CcCCCCc
Q 018241 131 LVKGASQ 137 (359)
Q Consensus 131 ~~~~~~~ 137 (359)
+.+...+
T Consensus 105 fGDQinK 111 (406)
T KOG3859|consen 105 FGDQINK 111 (406)
T ss_pred cccccCc
Confidence 9655444
No 368
>KOG1533 consensus Predicted GTPase [General function prediction only]
Probab=96.59 E-value=0.0045 Score=56.11 Aligned_cols=20 Identities=35% Similarity=0.527 Sum_probs=17.2
Q ss_pred EEEEEecCCCChhHHHHHHH
Q 018241 58 RAGIVGLPNVGKSTLFNAVV 77 (359)
Q Consensus 58 ~i~ivG~pn~GKSTL~n~L~ 77 (359)
-..+||+||+||||..+-++
T Consensus 4 gqvVIGPPgSGKsTYc~g~~ 23 (290)
T KOG1533|consen 4 GQVVIGPPGSGKSTYCNGMS 23 (290)
T ss_pred ceEEEcCCCCCccchhhhHH
Confidence 45789999999999988776
No 369
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=96.55 E-value=0.0023 Score=56.05 Aligned_cols=23 Identities=35% Similarity=0.469 Sum_probs=20.9
Q ss_pred CcEEEEEecCCCChhHHHHHHHh
Q 018241 56 SLRAGIVGLPNVGKSTLFNAVVE 78 (359)
Q Consensus 56 ~~~i~ivG~pn~GKSTL~n~L~~ 78 (359)
.-.++|+|.+|+|||||+|.+.|
T Consensus 25 ge~vAi~GpSGaGKSTLLnLIAG 47 (231)
T COG3840 25 GEIVAILGPSGAGKSTLLNLIAG 47 (231)
T ss_pred CcEEEEECCCCccHHHHHHHHHh
Confidence 45899999999999999999994
No 370
>PRK00300 gmk guanylate kinase; Provisional
Probab=96.55 E-value=0.0022 Score=57.15 Aligned_cols=44 Identities=27% Similarity=0.286 Sum_probs=31.5
Q ss_pred CCcEEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEE
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGI 98 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~ 98 (359)
.+..|+|+|.+|+|||||.+.|.+.........+.+|+.|..|.
T Consensus 4 ~g~~i~i~G~sGsGKstl~~~l~~~~~~~~~~~~~~tr~p~~ge 47 (205)
T PRK00300 4 RGLLIVLSGPSGAGKSTLVKALLERDPNLQLSVSATTRAPRPGE 47 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCccceeccCccccCCCCCC
Confidence 45689999999999999999999543222233445677676654
No 371
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.50 E-value=0.0016 Score=59.55 Aligned_cols=25 Identities=32% Similarity=0.360 Sum_probs=21.7
Q ss_pred cEEEEEecCCCChhHHHHHHHhccc
Q 018241 57 LRAGIVGLPNVGKSTLFNAVVENGK 81 (359)
Q Consensus 57 ~~i~ivG~pn~GKSTL~n~L~~~~~ 81 (359)
=-|+|+|++|+|||||+|.+.|-..
T Consensus 30 EfvsilGpSGcGKSTLLriiAGL~~ 54 (248)
T COG1116 30 EFVAILGPSGCGKSTLLRLIAGLEK 54 (248)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4689999999999999999996443
No 372
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.50 E-value=0.0022 Score=62.70 Aligned_cols=24 Identities=21% Similarity=0.190 Sum_probs=21.1
Q ss_pred CCcEEEEEecCCCChhHHHHHHHh
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVVE 78 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~~ 78 (359)
.+..++++|++|+||||++..|..
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~ 228 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGW 228 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 345789999999999999999983
No 373
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.50 E-value=0.0023 Score=63.86 Aligned_cols=23 Identities=26% Similarity=0.359 Sum_probs=20.2
Q ss_pred CcEEEEEecCCCChhHHHHHHHh
Q 018241 56 SLRAGIVGLPNVGKSTLFNAVVE 78 (359)
Q Consensus 56 ~~~i~ivG~pn~GKSTL~n~L~~ 78 (359)
+..++|+|++||||||++..|..
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~ 243 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAA 243 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 34799999999999999998873
No 374
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=96.46 E-value=0.0045 Score=58.18 Aligned_cols=22 Identities=27% Similarity=0.314 Sum_probs=19.8
Q ss_pred CcEEEEEecCCCChhHHHHHHH
Q 018241 56 SLRAGIVGLPNVGKSTLFNAVV 77 (359)
Q Consensus 56 ~~~i~ivG~pn~GKSTL~n~L~ 77 (359)
+..|+++|.||+||||++..|.
T Consensus 72 ~~vi~l~G~~G~GKTTt~akLA 93 (272)
T TIGR00064 72 PNVILFVGVNGVGKTTTIAKLA 93 (272)
T ss_pred CeEEEEECCCCCcHHHHHHHHH
Confidence 4579999999999999999887
No 375
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=96.45 E-value=0.0028 Score=57.81 Aligned_cols=37 Identities=35% Similarity=0.538 Sum_probs=28.7
Q ss_pred CCcEEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCC
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPD 103 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~ 103 (359)
.+=+|||||++|||||||++.|.| ...|..|.+.+..
T Consensus 52 ~Ge~vGiiG~NGaGKSTLlkliaG------------i~~Pt~G~v~v~G 88 (249)
T COG1134 52 KGERVGIIGHNGAGKSTLLKLIAG------------IYKPTSGKVKVTG 88 (249)
T ss_pred CCCEEEEECCCCCcHHHHHHHHhC------------ccCCCCceEEEcc
Confidence 445899999999999999999992 2236667776653
No 376
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=96.42 E-value=0.0026 Score=51.49 Aligned_cols=20 Identities=40% Similarity=0.433 Sum_probs=19.0
Q ss_pred EEEEEecCCCChhHHHHHHH
Q 018241 58 RAGIVGLPNVGKSTLFNAVV 77 (359)
Q Consensus 58 ~i~ivG~pn~GKSTL~n~L~ 77 (359)
.|+|.|.|+|||||+.+.|.
T Consensus 1 vI~I~G~~gsGKST~a~~La 20 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELA 20 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHH
Confidence 48999999999999999998
No 377
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=96.39 E-value=0.0026 Score=52.75 Aligned_cols=25 Identities=36% Similarity=0.340 Sum_probs=21.8
Q ss_pred CCcEEEEEecCCCChhHHHHHHHhc
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVVEN 79 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~~~ 79 (359)
.+-.++|+|.+|+|||||+++|+|.
T Consensus 10 ~g~~~~i~G~nGsGKStLl~~l~g~ 34 (137)
T PF00005_consen 10 PGEIVAIVGPNGSGKSTLLKALAGL 34 (137)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHTTS
T ss_pred CCCEEEEEccCCCccccceeeeccc
Confidence 4458999999999999999999943
No 378
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=96.39 E-value=0.0011 Score=60.40 Aligned_cols=37 Identities=32% Similarity=0.456 Sum_probs=28.2
Q ss_pred CCcEEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCC
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPD 103 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~ 103 (359)
.+-.+++||+.|||||||||.+||.-. |..|.+.+.+
T Consensus 29 ~Gei~~LIGPNGAGKTTlfNlitG~~~------------P~~G~v~~~G 65 (250)
T COG0411 29 PGEIVGLIGPNGAGKTTLFNLITGFYK------------PSSGTVIFRG 65 (250)
T ss_pred CCeEEEEECCCCCCceeeeeeeccccc------------CCCceEEECC
Confidence 344789999999999999999994321 5567776654
No 379
>KOG0466 consensus Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=96.37 E-value=0.0044 Score=58.13 Aligned_cols=163 Identities=23% Similarity=0.209 Sum_probs=87.8
Q ss_pred CCcEEEEEecCCCChhHHHHHHHhccccccCCCC--ceeccc---eeEEEEeCCCccchhcccccc--------------
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFP--FCTIEP---NVGIVAVPDPRLHVLSGLSKS-------------- 115 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p--~tT~~~---~~g~~~~~~~r~~~l~~~~~~-------------- 115 (359)
-.++||-+|+---||||++.|++|-..+.-.+-. ..|+.- +.-.....++.. .-+.||.+
T Consensus 37 ATiNIGTIGHVAHGKSTvVkAiSGv~TvrFK~ELERNITIKLGYANAKIYkc~~~kC-prP~cy~s~gS~k~d~~~c~~~ 115 (466)
T KOG0466|consen 37 ATINIGTIGHVAHGKSTVVKAISGVHTVRFKNELERNITIKLGYANAKIYKCDDPKC-PRPGCYRSFGSSKEDRPPCDRP 115 (466)
T ss_pred eeeeecceeccccCcceeeeeeccceEEEehhhhhcceeEEeccccceEEecCCCCC-CCcchhhccCCCCCCCCCcccC
Confidence 3479999999999999999999974332211100 011100 000011111000 00111110
Q ss_pred -----ccccCceEEEEecCCCcCCCCcCcchhhhHhhHHHhcccceEEeecCCCc------------------cEEEeCC
Q 018241 116 -----QKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDN------------------DIVHVNG 172 (359)
Q Consensus 116 -----~~~~~~~i~lvDtpG~~~~~~~~~~~~~~~l~~i~~aD~il~Vvd~~~~~------------------~v~~v~n 172 (359)
-+. -..+-|+|+||.. -++...++-..-.|++++++-+.+.. .++.+-|
T Consensus 116 g~~~~~kl-vRHVSfVDCPGHD-------iLMaTMLnGaAvmDaalLlIA~NEsCPQPQTsEHLaaveiM~LkhiiilQN 187 (466)
T KOG0466|consen 116 GCEGKMKL-VRHVSFVDCPGHD-------ILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAAVEIMKLKHIIILQN 187 (466)
T ss_pred CCCCceEE-EEEEEeccCCchH-------HHHHHHhcchHHhhhhhhhhhcCCCCCCCchhhHHHHHHHhhhceEEEEec
Confidence 011 1257899999972 12334455555568888888766632 2677889
Q ss_pred cccCCcchHHHHhhhhhccHHHHHHHHHHHh-hhccccccchhhHHHHHHHHHHHHHHhcC
Q 018241 173 KVDPKSDVDVINLELVFSDLDQIEKRMEKLK-KGKAKDSQSKLKEDAEKAALEKIQQALMD 232 (359)
Q Consensus 173 k~d~~~~~~~i~~el~~~d~~~l~~~~~~~~-~~~~~~~~Sa~~~~~~~~ll~~i~~~L~~ 232 (359)
|+|.+++-..++. .+.+.+.+.--. .-+...++||.-..|++.+.+.+.+.+|.
T Consensus 188 KiDli~e~~A~eq------~e~I~kFi~~t~ae~aPiiPisAQlkyNId~v~eyivkkIPv 242 (466)
T KOG0466|consen 188 KIDLIKESQALEQ------HEQIQKFIQGTVAEGAPIIPISAQLKYNIDVVCEYIVKKIPV 242 (466)
T ss_pred hhhhhhHHHHHHH------HHHHHHHHhccccCCCceeeehhhhccChHHHHHHHHhcCCC
Confidence 9998765444332 122222221100 01112578888889999999999988864
No 380
>KOG1673 consensus Ras GTPases [General function prediction only]
Probab=96.36 E-value=0.0094 Score=50.60 Aligned_cols=145 Identities=17% Similarity=0.156 Sum_probs=80.6
Q ss_pred CCcEEEEEecCCCChhHHHHHHHhccccccCCCCcee-ccceeEEEEeCCCccchhccccccccccCceEEEEecCCCcC
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCT-IEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVK 133 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT-~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~~ 133 (359)
-.+||+++|-+..|||||+-.-.|+..-. .+..++ ..-....+.+.+. ...+-+||..|..+
T Consensus 19 Vslkv~llGD~qiGKTs~mvkYV~~~~de--~~~q~~GvN~mdkt~~i~~t---------------~IsfSIwdlgG~~~ 81 (205)
T KOG1673|consen 19 VSLKVGLLGDAQIGKTSLMVKYVQNEYDE--EYTQTLGVNFMDKTVSIRGT---------------DISFSIWDLGGQRE 81 (205)
T ss_pred eEEEEEeecccccCceeeehhhhcchhHH--HHHHHhCccceeeEEEecce---------------EEEEEEEecCCcHh
Confidence 34899999999999999998888654421 111111 0111122333322 23578999999865
Q ss_pred CCCcCcchhhhHhhHHHhcccceEEeecCCCc------------------cE-EEeCCcccCCcchHHHHhhhhhccHHH
Q 018241 134 GASQGEGLGNKFLSHIREVDSILQVVRCFEDN------------------DI-VHVNGKVDPKSDVDVINLELVFSDLDQ 194 (359)
Q Consensus 134 ~~~~~~~~~~~~l~~i~~aD~il~Vvd~~~~~------------------~v-~~v~nk~d~~~~~~~i~~el~~~d~~~ 194 (359)
+.. ..--++.++-+|+++.|.+... .+ +.+..|.|..-++. -...+.
T Consensus 82 ~~n-------~lPiac~dsvaIlFmFDLt~r~TLnSi~~WY~QAr~~NktAiPilvGTKyD~fi~lp-------~e~Q~~ 147 (205)
T KOG1673|consen 82 FIN-------MLPIACKDSVAILFMFDLTRRSTLNSIKEWYRQARGLNKTAIPILVGTKYDLFIDLP-------PELQET 147 (205)
T ss_pred hhc-------cCceeecCcEEEEEEEecCchHHHHHHHHHHHHHhccCCccceEEeccchHhhhcCC-------HHHHHH
Confidence 443 3444567888999999987632 12 34555655432211 111123
Q ss_pred HHHHHHHHhhhccc--cccchhhHHHHHHHHHHHHHHh
Q 018241 195 IEKRMEKLKKGKAK--DSQSKLKEDAEKAALEKIQQAL 230 (359)
Q Consensus 195 l~~~~~~~~~~~~~--~~~Sa~~~~~~~~ll~~i~~~L 230 (359)
+.+.-.++.+.+.. .-.|+...-|+...++-+...+
T Consensus 148 I~~qar~YAk~mnAsL~F~Sts~sINv~KIFK~vlAkl 185 (205)
T KOG1673|consen 148 ISRQARKYAKVMNASLFFCSTSHSINVQKIFKIVLAKL 185 (205)
T ss_pred HHHHHHHHHHHhCCcEEEeeccccccHHHHHHHHHHHH
Confidence 33433344444331 2335555667777777666665
No 381
>PRK14738 gmk guanylate kinase; Provisional
Probab=96.34 E-value=0.0034 Score=56.44 Aligned_cols=43 Identities=21% Similarity=0.135 Sum_probs=30.2
Q ss_pred CCcEEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeE
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVG 97 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g 97 (359)
.+.-|.|+|.+|||||||+++|......-.-..+.||+.+..+
T Consensus 12 ~~~~ivi~GpsG~GK~tl~~~L~~~~~~~~~~~~~ttr~~r~~ 54 (206)
T PRK14738 12 KPLLVVISGPSGVGKDAVLARMRERKLPFHFVVTATTRPKRPG 54 (206)
T ss_pred CCeEEEEECcCCCCHHHHHHHHHhcCCcccccccccCCCCCCC
Confidence 4567899999999999999999833222223455677665544
No 382
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.33 E-value=0.0049 Score=52.84 Aligned_cols=25 Identities=40% Similarity=0.615 Sum_probs=22.6
Q ss_pred cCCcEEEEEecCCCChhHHHHHHHh
Q 018241 54 SMSLRAGIVGLPNVGKSTLFNAVVE 78 (359)
Q Consensus 54 ~~~~~i~ivG~pn~GKSTL~n~L~~ 78 (359)
.+.++|+|-|+||||||||+..+.+
T Consensus 3 ~~~mki~ITG~PGvGKtTl~~ki~e 27 (179)
T COG1618 3 KMAMKIFITGRPGVGKTTLVLKIAE 27 (179)
T ss_pred CcceEEEEeCCCCccHHHHHHHHHH
Confidence 4679999999999999999999883
No 383
>KOG2749 consensus mRNA cleavage and polyadenylation factor IA/II complex, subunit CLP1 [RNA processing and modification]
Probab=96.32 E-value=0.0063 Score=58.27 Aligned_cols=52 Identities=27% Similarity=0.396 Sum_probs=34.4
Q ss_pred cccCCcEEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCC
Q 018241 52 KISMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPD 103 (359)
Q Consensus 52 ~~~~~~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~ 103 (359)
..+.++++.+||..++|||||...|++-+.-..-.-.|+-.|+..|.+.+|+
T Consensus 99 ~~~~GPrv~vVGp~d~GKsTl~r~L~nyavk~gr~Plfv~LDvgQ~sitiPG 150 (415)
T KOG2749|consen 99 ESSYGPRVMVVGPTDVGKSTLCRILLNYAVKQGRRPLFVELDVGQGSITIPG 150 (415)
T ss_pred hhccCCEEEEECCCccchHHHHHHHHHHHHHcCCcceEEEcCCCCCceeccc
Confidence 4456799999999999999999999953322212222444555555555543
No 384
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.29 E-value=0.004 Score=58.38 Aligned_cols=25 Identities=20% Similarity=0.280 Sum_probs=21.8
Q ss_pred CCcEEEEEecCCCChhHHHHHHHhc
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVVEN 79 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~~~ 79 (359)
.+.+++++|.+++||||++..|++.
T Consensus 74 ~~~~i~~~G~~g~GKTtl~~~l~~~ 98 (270)
T PRK06731 74 EVQTIALIGPTGVGKTTTLAKMAWQ 98 (270)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHH
Confidence 3469999999999999999999843
No 385
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.27 E-value=0.0032 Score=62.34 Aligned_cols=22 Identities=23% Similarity=0.197 Sum_probs=19.9
Q ss_pred cEEEEEecCCCChhHHHHHHHh
Q 018241 57 LRAGIVGLPNVGKSTLFNAVVE 78 (359)
Q Consensus 57 ~~i~ivG~pn~GKSTL~n~L~~ 78 (359)
..++++|.+||||||+...|..
T Consensus 224 ~vi~lvGptGvGKTTtaaKLA~ 245 (432)
T PRK12724 224 KVVFFVGPTGSGKTTSIAKLAA 245 (432)
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999983
No 386
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=96.25 E-value=0.0062 Score=68.31 Aligned_cols=111 Identities=18% Similarity=0.136 Sum_probs=63.9
Q ss_pred cEEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCCcCCCC
Q 018241 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGAS 136 (359)
Q Consensus 57 ~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~~~~~ 136 (359)
+=..|||.||+||||+++.. |..... ....+. ....+ +++.+ .|.++ ...+.+++||+|-.-...
T Consensus 112 PWYlviG~~gsGKtt~l~~s-gl~~pl-~~~~~~--~~~~~---~~~t~---~c~ww-----f~~~avliDtaG~y~~~~ 176 (1169)
T TIGR03348 112 PWYLVIGPPGSGKTTLLQNS-GLKFPL-AERLGA--AALRG---VGGTR---NCDWW-----FTDEAVLIDTAGRYTTQD 176 (1169)
T ss_pred CCEEEECCCCCchhHHHHhC-CCCCcC-chhhcc--ccccC---CCCCc---ccceE-----ecCCEEEEcCCCccccCC
Confidence 44678899999999999987 333211 110000 01101 11111 01111 123578999999642221
Q ss_pred ----cCcchhhhHhhHHH------hcccceEEeecCC-----------------------------CccEEEeCCcccCC
Q 018241 137 ----QGEGLGNKFLSHIR------EVDSILQVVRCFE-----------------------------DNDIVHVNGKVDPK 177 (359)
Q Consensus 137 ----~~~~~~~~~l~~i~------~aD~il~Vvd~~~-----------------------------~~~v~~v~nk~d~~ 177 (359)
........|+..++ ..|.||++||+.+ ..||..+..|+|.+
T Consensus 177 ~~~~~~~~~W~~fL~~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~lg~~~PVYvv~Tk~Dll 256 (1169)
T TIGR03348 177 SDPEEDAAAWLGFLGLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQLGARFPVYLVLTKADLL 256 (1169)
T ss_pred CcccccHHHHHHHHHHHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEecchhh
Confidence 12233456666663 3799999999876 23688899999988
Q ss_pred cchHH
Q 018241 178 SDVDV 182 (359)
Q Consensus 178 ~~~~~ 182 (359)
..+..
T Consensus 257 ~GF~~ 261 (1169)
T TIGR03348 257 AGFEE 261 (1169)
T ss_pred cCHHH
Confidence 66544
No 387
>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]
Probab=96.22 E-value=0.03 Score=56.43 Aligned_cols=108 Identities=16% Similarity=0.184 Sum_probs=61.3
Q ss_pred CcEEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeC--------C-Cc-cch-----hc----------
Q 018241 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVP--------D-PR-LHV-----LS---------- 110 (359)
Q Consensus 56 ~~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~--------~-~r-~~~-----l~---------- 110 (359)
-++|++||-..+||||.+..+......+-+.-.-.|+.|....+..+ | .| +|- |.
T Consensus 308 LPRVVVVGDQSaGKTSVLEmiAqARIFPRGSGEMMTRaPVKVTLsEGPyHVAqFrDSsREfDLTKE~DLq~LR~e~E~RM 387 (980)
T KOG0447|consen 308 LPRVVVVGDQSAGKTSVLEMIAQARIFPRGSGEMMTRSPVKVTLSEGPHHVALFKDSSREFDLTKEEDLAALRHEIELRM 387 (980)
T ss_pred CceEEEEcCccccchHHHHHHHHhccCcCCCcceeccCCeEEEeccCcchhhhhccccccccccchhHHHHHHHHHHHHH
Confidence 48999999999999999999984444433333335655554433221 1 11 110 00
Q ss_pred -ccccccccc-------------CceEEEEecCCCcCCCC-----c-CcchhhhHhhHHHhcccceEEe-ecCC
Q 018241 111 -GLSKSQKAV-------------PASVEFVDIAGLVKGAS-----Q-GEGLGNKFLSHIREVDSILQVV-RCFE 163 (359)
Q Consensus 111 -~~~~~~~~~-------------~~~i~lvDtpG~~~~~~-----~-~~~~~~~~l~~i~~aD~il~Vv-d~~~ 163 (359)
.-+...+++ -..++++|.||++..-. . .+.+......++.+.++|++++ |.+-
T Consensus 388 r~sVr~GkTVSnEvIsltVKGPgLqRMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCIQDGSV 461 (980)
T KOG0447|consen 388 RKNVKEGCTVSPETISLNVKGPGLQRMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQDGSV 461 (980)
T ss_pred HhcccCCcccccceEEEeecCCCcceeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeEEEEeccCCc
Confidence 011111111 12688999999964321 1 1233344567788889998887 4443
No 388
>PRK07261 topology modulation protein; Provisional
Probab=96.20 E-value=0.0036 Score=54.59 Aligned_cols=21 Identities=33% Similarity=0.566 Sum_probs=19.8
Q ss_pred cEEEEEecCCCChhHHHHHHH
Q 018241 57 LRAGIVGLPNVGKSTLFNAVV 77 (359)
Q Consensus 57 ~~i~ivG~pn~GKSTL~n~L~ 77 (359)
++|+|+|.||+|||||...|.
T Consensus 1 ~ri~i~G~~GsGKSTla~~l~ 21 (171)
T PRK07261 1 MKIAIIGYSGSGKSTLARKLS 21 (171)
T ss_pred CEEEEEcCCCCCHHHHHHHHH
Confidence 589999999999999999997
No 389
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=96.19 E-value=0.1 Score=48.66 Aligned_cols=28 Identities=25% Similarity=0.259 Sum_probs=23.5
Q ss_pred ccCCcEEEEEecCCCChhHHHHHHHhcc
Q 018241 53 ISMSLRAGIVGLPNVGKSTLFNAVVENG 80 (359)
Q Consensus 53 ~~~~~~i~ivG~pn~GKSTL~n~L~~~~ 80 (359)
...+-.+|++|..||||||++..|||.-
T Consensus 47 IP~G~ivgflGaNGAGKSTtLKmLTGll 74 (325)
T COG4586 47 IPKGEIVGFLGANGAGKSTTLKMLTGLL 74 (325)
T ss_pred cCCCcEEEEEcCCCCcchhhHHHHhCcc
Confidence 3445689999999999999999999543
No 390
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=96.12 E-value=0.0086 Score=55.56 Aligned_cols=38 Identities=29% Similarity=0.428 Sum_probs=28.4
Q ss_pred CcEEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCCCc
Q 018241 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPR 105 (359)
Q Consensus 56 ~~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~~r 105 (359)
+--++|+|+.|||||||+++|+|- ..|..|.+.+.+..
T Consensus 28 G~i~~iiGpNG~GKSTLLk~l~g~------------l~p~~G~V~l~g~~ 65 (258)
T COG1120 28 GEITGILGPNGSGKSTLLKCLAGL------------LKPKSGEVLLDGKD 65 (258)
T ss_pred CcEEEEECCCCCCHHHHHHHHhcc------------CCCCCCEEEECCCc
Confidence 346899999999999999999932 22556666666543
No 391
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=96.09 E-value=0.0051 Score=55.29 Aligned_cols=21 Identities=38% Similarity=0.559 Sum_probs=19.2
Q ss_pred EEEEEecCCCChhHHHHHHHh
Q 018241 58 RAGIVGLPNVGKSTLFNAVVE 78 (359)
Q Consensus 58 ~i~ivG~pn~GKSTL~n~L~~ 78 (359)
=|.|+|..|||||||+|+++|
T Consensus 34 FvtViGsNGAGKSTlln~iaG 54 (263)
T COG1101 34 FVTVIGSNGAGKSTLLNAIAG 54 (263)
T ss_pred eEEEEcCCCccHHHHHHHhhC
Confidence 578899999999999999993
No 392
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=96.05 E-value=0.0068 Score=52.28 Aligned_cols=21 Identities=33% Similarity=0.599 Sum_probs=19.6
Q ss_pred cEEEEEecCCCChhHHHHHHH
Q 018241 57 LRAGIVGLPNVGKSTLFNAVV 77 (359)
Q Consensus 57 ~~i~ivG~pn~GKSTL~n~L~ 77 (359)
..++|+|++|+|||||+++|.
T Consensus 2 ~vi~i~G~~gsGKTTli~~L~ 22 (159)
T cd03116 2 KVIGFVGYSGSGKTTLLEKLI 22 (159)
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 368999999999999999999
No 393
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=96.03 E-value=0.0055 Score=44.10 Aligned_cols=20 Identities=40% Similarity=0.463 Sum_probs=18.6
Q ss_pred EEEEEecCCCChhHHHHHHH
Q 018241 58 RAGIVGLPNVGKSTLFNAVV 77 (359)
Q Consensus 58 ~i~ivG~pn~GKSTL~n~L~ 77 (359)
...|.|.+++|||||+.|+.
T Consensus 25 ~tli~G~nGsGKSTllDAi~ 44 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQ 44 (62)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 58899999999999999987
No 394
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=96.02 E-value=0.008 Score=52.13 Aligned_cols=20 Identities=35% Similarity=0.411 Sum_probs=17.5
Q ss_pred EEEEEecCCCChhHHHHHHH
Q 018241 58 RAGIVGLPNVGKSTLFNAVV 77 (359)
Q Consensus 58 ~i~ivG~pn~GKSTL~n~L~ 77 (359)
-++++|.||+||||+...+.
T Consensus 2 ~~~~~G~~G~GKTt~~~~la 21 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLA 21 (173)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 36889999999999988776
No 395
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.01 E-value=0.0058 Score=68.35 Aligned_cols=38 Identities=32% Similarity=0.495 Sum_probs=29.1
Q ss_pred cCCcEEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCC
Q 018241 54 SMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPD 103 (359)
Q Consensus 54 ~~~~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~ 103 (359)
..+-||||||++|||||||+++|. + -.++..|.+.+++
T Consensus 1164 ~p~eKVGIVGRTGaGKSSL~~aLF-R-----------l~e~~~G~I~IDg 1201 (1381)
T KOG0054|consen 1164 KPGEKVGIVGRTGAGKSSLILALF-R-----------LVEPAEGEILIDG 1201 (1381)
T ss_pred cCCceEEEeCCCCCCHHHHHHHHH-H-----------hcCccCCeEEEcC
Confidence 345699999999999999999998 2 1235567666664
No 396
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=96.01 E-value=0.013 Score=50.08 Aligned_cols=73 Identities=15% Similarity=0.117 Sum_probs=48.3
Q ss_pred HhhHHHhcccceEEeecCCC------------------ccEEEeCCcccCCcchHHHHhhhhhccHHHHHHHHHHHhhhc
Q 018241 145 FLSHIREVDSILQVVRCFED------------------NDIVHVNGKVDPKSDVDVINLELVFSDLDQIEKRMEKLKKGK 206 (359)
Q Consensus 145 ~l~~i~~aD~il~Vvd~~~~------------------~~v~~v~nk~d~~~~~~~i~~el~~~d~~~l~~~~~~~~~~~ 206 (359)
.++.+.+||++++|+|++++ .+++.+.||+|.+.+.+ + ......+.+..
T Consensus 2 ~~~~l~~aD~il~VvD~~~p~~~~~~~i~~~l~~~~~~~p~ilVlNKiDl~~~~~-~------------~~~~~~~~~~~ 68 (157)
T cd01858 2 LYKVIDSSDVVIQVLDARDPMGTRCKHVEEYLKKEKPHKHLIFVLNKCDLVPTWV-T------------ARWVKILSKEY 68 (157)
T ss_pred hhHhhhhCCEEEEEEECCCCccccCHHHHHHHHhccCCCCEEEEEEchhcCCHHH-H------------HHHHHHHhcCC
Confidence 46778999999999999763 35788999999764321 1 11111121111
Q ss_pred c--ccccchhhHHHHHHHHHHHHHHh
Q 018241 207 A--KDSQSKLKEDAEKAALEKIQQAL 230 (359)
Q Consensus 207 ~--~~~~Sa~~~~~~~~ll~~i~~~L 230 (359)
. ...+||+.+.+..++++.+.+++
T Consensus 69 ~~~~~~iSa~~~~~~~~L~~~l~~~~ 94 (157)
T cd01858 69 PTIAFHASINNPFGKGSLIQLLRQFS 94 (157)
T ss_pred cEEEEEeeccccccHHHHHHHHHHHH
Confidence 1 14578888888888888887765
No 397
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.00 E-value=0.0064 Score=55.30 Aligned_cols=35 Identities=26% Similarity=0.440 Sum_probs=26.8
Q ss_pred CcEEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeC
Q 018241 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVP 102 (359)
Q Consensus 56 ~~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~ 102 (359)
+=-|+|||.+|||||||+..|.| +.+++.|.+.+.
T Consensus 30 GE~VaiIG~SGaGKSTLLR~lng------------l~d~t~G~i~~~ 64 (258)
T COG3638 30 GEMVAIIGPSGAGKSTLLRSLNG------------LVDPTSGEILFN 64 (258)
T ss_pred CcEEEEECCCCCcHHHHHHHHhc------------ccCCCcceEEec
Confidence 34699999999999999999983 344666665544
No 398
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.00 E-value=0.0054 Score=62.35 Aligned_cols=24 Identities=21% Similarity=0.273 Sum_probs=21.3
Q ss_pred CCcEEEEEecCCCChhHHHHHHHh
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVVE 78 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~~ 78 (359)
.+-.|+|+|.+|+||||++..|..
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa 372 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQ 372 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999999984
No 399
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=95.96 E-value=0.015 Score=48.70 Aligned_cols=32 Identities=13% Similarity=0.171 Sum_probs=24.5
Q ss_pred ceEEEEecCCCcCCCCcCcchhhhHhhHHHhcccceEEeec
Q 018241 121 ASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRC 161 (359)
Q Consensus 121 ~~i~lvDtpG~~~~~~~~~~~~~~~l~~i~~aD~il~Vvd~ 161 (359)
..+.++|+|+.... .....+..||.+++|++.
T Consensus 45 yd~VIiD~p~~~~~---------~~~~~l~~aD~vviv~~~ 76 (139)
T cd02038 45 YDYIIIDTGAGISD---------NVLDFFLAADEVIVVTTP 76 (139)
T ss_pred CCEEEEECCCCCCH---------HHHHHHHhCCeEEEEcCC
Confidence 46999999985421 345677889999999886
No 400
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=95.94 E-value=0.0083 Score=54.01 Aligned_cols=25 Identities=24% Similarity=0.276 Sum_probs=21.9
Q ss_pred CCcEEEEEecCCCChhHHHHHHHhc
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVVEN 79 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~~~ 79 (359)
.+-.++|+|.+|+|||||++.|+|.
T Consensus 28 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 52 (216)
T TIGR00960 28 KGEMVFLVGHSGAGKSTFLKLILGI 52 (216)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4457999999999999999999943
No 401
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=95.91 E-value=0.019 Score=45.16 Aligned_cols=69 Identities=14% Similarity=0.092 Sum_probs=43.9
Q ss_pred EEEEe-cCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCCcCCCCc
Q 018241 59 AGIVG-LPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGASQ 137 (359)
Q Consensus 59 i~ivG-~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~~~~~~ 137 (359)
|+++| ..|+||||+.-.|. ...+.- . .....+..+. ...+.++|+|+....
T Consensus 2 i~~~~~kgG~Gkst~~~~la-~~~~~~-~-------~~vl~~d~d~----------------~~d~viiD~p~~~~~--- 53 (104)
T cd02042 2 IAVANQKGGVGKTTTAVNLA-AALARR-G-------KRVLLIDLDP----------------QYDYIIIDTPPSLGL--- 53 (104)
T ss_pred EEEEeCCCCcCHHHHHHHHH-HHHHhC-C-------CcEEEEeCCC----------------CCCEEEEeCcCCCCH---
Confidence 56666 77999999988887 433321 1 1112222211 135899999997422
Q ss_pred CcchhhhHhhHHHhcccceEEeec
Q 018241 138 GEGLGNKFLSHIREVDSILQVVRC 161 (359)
Q Consensus 138 ~~~~~~~~l~~i~~aD~il~Vvd~ 161 (359)
.+...+..||.++.+++.
T Consensus 54 ------~~~~~l~~ad~viv~~~~ 71 (104)
T cd02042 54 ------LTRNALAAADLVLIPVQP 71 (104)
T ss_pred ------HHHHHHHHCCEEEEeccC
Confidence 345677889999999875
No 402
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=95.90 E-value=0.006 Score=57.63 Aligned_cols=23 Identities=26% Similarity=0.346 Sum_probs=20.6
Q ss_pred CcEEEEEecCCCChhHHHHHHHh
Q 018241 56 SLRAGIVGLPNVGKSTLFNAVVE 78 (359)
Q Consensus 56 ~~~i~ivG~pn~GKSTL~n~L~~ 78 (359)
+..|+|+|.+||||||++..|..
T Consensus 194 ~~vi~~vGptGvGKTTt~~kLa~ 216 (282)
T TIGR03499 194 GGVIALVGPTGVGKTTTLAKLAA 216 (282)
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999983
No 403
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.90 E-value=0.0088 Score=54.62 Aligned_cols=25 Identities=32% Similarity=0.352 Sum_probs=21.8
Q ss_pred CCcEEEEEecCCCChhHHHHHHHhc
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVVEN 79 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~~~ 79 (359)
.+-.++|+|.+|+|||||++.|+|.
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~G~ 49 (235)
T cd03261 25 RGEILAIIGPSGSGKSTLLRLIVGL 49 (235)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3457999999999999999999943
No 404
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=95.88 E-value=0.0067 Score=44.51 Aligned_cols=19 Identities=32% Similarity=0.387 Sum_probs=18.3
Q ss_pred EEEEecCCCChhHHHHHHH
Q 018241 59 AGIVGLPNVGKSTLFNAVV 77 (359)
Q Consensus 59 i~ivG~pn~GKSTL~n~L~ 77 (359)
|++.|.|++||||+.++|.
T Consensus 2 i~i~G~~gsGKst~~~~l~ 20 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLA 20 (69)
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 7899999999999999998
No 405
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=95.88 E-value=0.0061 Score=53.60 Aligned_cols=21 Identities=43% Similarity=0.619 Sum_probs=20.1
Q ss_pred cEEEEEecCCCChhHHHHHHH
Q 018241 57 LRAGIVGLPNVGKSTLFNAVV 77 (359)
Q Consensus 57 ~~i~ivG~pn~GKSTL~n~L~ 77 (359)
++|.|+|.|||||||+...|+
T Consensus 1 ~riiilG~pGaGK~T~A~~La 21 (178)
T COG0563 1 MRILILGPPGAGKSTLAKKLA 21 (178)
T ss_pred CeEEEECCCCCCHHHHHHHHH
Confidence 589999999999999999999
No 406
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=95.86 E-value=0.009 Score=50.47 Aligned_cols=25 Identities=36% Similarity=0.509 Sum_probs=21.8
Q ss_pred CCcEEEEEecCCCChhHHHHHHHhc
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVVEN 79 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~~~ 79 (359)
.+-.++|+|.+|+|||||++.|+|.
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~ 49 (144)
T cd03221 25 PGDRIGLVGRNGAGKSTLLKLIAGE 49 (144)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCC
Confidence 4457899999999999999999954
No 407
>PF02263 GBP: Guanylate-binding protein, N-terminal domain; InterPro: IPR015894 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function, and an alpha-helical finger-like C-terminal domain (IPR003191 from INTERPRO). Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3QOF_A 3Q5E_C 3QNU_A 3Q5D_A 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=95.84 E-value=0.023 Score=53.04 Aligned_cols=64 Identities=23% Similarity=0.223 Sum_probs=39.9
Q ss_pred cEEEEEecCCCChhHHHHHHHhccc-cccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCCcC
Q 018241 57 LRAGIVGLPNVGKSTLFNAVVENGK-AQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVK 133 (359)
Q Consensus 57 ~~i~ivG~pn~GKSTL~n~L~~~~~-~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~~ 133 (359)
.-|+|+|..-+|||.|+|.|++... ..+++ ++...+.|.+-...+ ........+.++||.|+..
T Consensus 22 ~vvsi~G~~rtGKSfLln~l~~~~~gF~~~~---~~~~~T~Giw~w~~~----------~~~~~~~~v~llDteG~~~ 86 (260)
T PF02263_consen 22 AVVSIVGPYRTGKSFLLNQLLGPQSGFSWGP---TVEPCTKGIWMWSEP----------LPDGEKVAVVLLDTEGLGD 86 (260)
T ss_dssp EEEEEEEETTSSHHHHHHHHCCBSSSSESSS---CSSST-SCEEEECCE-----------TTSTCEEEEEEEEECBTT
T ss_pred EEEEeecCCccchHHHHHHHhcccccccccC---CCCCCCcceeeeecc----------cccccceeEEEecchhccc
Confidence 4689999999999999999995322 12221 222334565543321 0111146799999999976
No 408
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=95.84 E-value=0.013 Score=58.72 Aligned_cols=23 Identities=26% Similarity=0.296 Sum_probs=20.5
Q ss_pred CCcEEEEEecCCCChhHHHHHHH
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVV 77 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~ 77 (359)
.+..|.++|.+|+||||+...|.
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA 116 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLA 116 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHH
Confidence 45689999999999999998887
No 409
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=95.83 E-value=0.0099 Score=52.99 Aligned_cols=25 Identities=32% Similarity=0.291 Sum_probs=21.8
Q ss_pred CCcEEEEEecCCCChhHHHHHHHhc
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVVEN 79 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~~~ 79 (359)
.+-.++|+|.+|+|||||++.|+|.
T Consensus 23 ~Ge~~~i~G~nGsGKSTLl~~l~G~ 47 (206)
T TIGR03608 23 KGKMYAIIGESGSGKSTLLNIIGLL 47 (206)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcC
Confidence 3457999999999999999999953
No 410
>KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis]
Probab=95.82 E-value=0.015 Score=55.57 Aligned_cols=105 Identities=21% Similarity=0.206 Sum_probs=68.1
Q ss_pred ccCCcEEEEEecCCCChhHHHHHHHhccccc-----------cC-----CCCceeccceeEEEEeCCCccchhccccccc
Q 018241 53 ISMSLRAGIVGLPNVGKSTLFNAVVENGKAQ-----------AA-----NFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116 (359)
Q Consensus 53 ~~~~~~i~ivG~pn~GKSTL~n~L~~~~~~~-----------~~-----~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~ 116 (359)
.....+||-||+---|||||-.|+| +-.+. +. ..-|.| .+...+.|....
T Consensus 51 ~KPHvNVGTIGHVDHGKTTLTaAIT-kila~~g~A~~~kydeID~APEEkaRGIT--In~aHveYeTa~----------- 116 (449)
T KOG0460|consen 51 DKPHVNVGTIGHVDHGKTTLTAAIT-KILAEKGGAKFKKYDEIDKAPEEKARGIT--INAAHVEYETAK----------- 116 (449)
T ss_pred CCCcccccccccccCCchhHHHHHH-HHHHhccccccccHhhhhcChhhhhccce--Eeeeeeeeeccc-----------
Confidence 3445899999999999999999999 32221 11 122344 333444444322
Q ss_pred cccCceEEEEecCCCcCCCCcCcchhhhHhhHHHhcccceEEeecCCCc-----------------cEEEeCCcccCCcc
Q 018241 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDN-----------------DIVHVNGKVDPKSD 179 (359)
Q Consensus 117 ~~~~~~i~lvDtpG~~~~~~~~~~~~~~~l~~i~~aD~il~Vvd~~~~~-----------------~v~~v~nk~d~~~~ 179 (359)
..+-=+|+||..+... ....-....|..++||-+.+.+ .++.-+||+|.+.|
T Consensus 117 ----RhYaH~DCPGHADYIK-------NMItGaaqMDGaILVVaatDG~MPQTrEHlLLArQVGV~~ivvfiNKvD~V~d 185 (449)
T KOG0460|consen 117 ----RHYAHTDCPGHADYIK-------NMITGAAQMDGAILVVAATDGPMPQTREHLLLARQVGVKHIVVFINKVDLVDD 185 (449)
T ss_pred ----cccccCCCCchHHHHH-------HhhcCccccCceEEEEEcCCCCCcchHHHHHHHHHcCCceEEEEEecccccCC
Confidence 2355689999854322 1222235679999999999853 46778899999977
Q ss_pred hHH
Q 018241 180 VDV 182 (359)
Q Consensus 180 ~~~ 182 (359)
.+.
T Consensus 186 ~e~ 188 (449)
T KOG0460|consen 186 PEM 188 (449)
T ss_pred HHH
Confidence 655
No 411
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.82 E-value=0.01 Score=53.34 Aligned_cols=25 Identities=20% Similarity=0.259 Sum_probs=21.7
Q ss_pred CCcEEEEEecCCCChhHHHHHHHhc
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVVEN 79 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~~~ 79 (359)
.+-.++|+|.+|+|||||++.|+|.
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~G~ 49 (213)
T cd03259 25 PGEFLALLGPSGCGKTTLLRLIAGL 49 (213)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 3457999999999999999999943
No 412
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=95.81 E-value=0.0098 Score=52.74 Aligned_cols=25 Identities=28% Similarity=0.251 Sum_probs=22.0
Q ss_pred CCcEEEEEecCCCChhHHHHHHHhc
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVVEN 79 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~~~ 79 (359)
.+-.++|+|.+|+|||||++.|+|.
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~G~ 49 (195)
T PRK13541 25 PSAITYIKGANGCGKSSLLRMIAGI 49 (195)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcC
Confidence 4458999999999999999999954
No 413
>KOG4423 consensus GTP-binding protein-like, RAS superfamily [Signal transduction mechanisms]
Probab=95.81 E-value=0.0008 Score=58.64 Aligned_cols=87 Identities=16% Similarity=0.176 Sum_probs=52.5
Q ss_pred ccCCcEEEEEecCCCChhHHHHHHHhccccccCCCCceec--cceeEEEEeCCCccchhccccccccccCceEEEEecCC
Q 018241 53 ISMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTI--EPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAG 130 (359)
Q Consensus 53 ~~~~~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~--~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG 130 (359)
+.+-.++-++|.-++||++++.+-.-..... +|- .|+ +-...+....+.. -..++|||++|
T Consensus 22 r~hL~k~lVig~~~vgkts~i~ryv~~nfs~--~yR-AtIgvdfalkVl~wdd~t--------------~vRlqLwdIag 84 (229)
T KOG4423|consen 22 REHLFKVLVIGDLGVGKTSSIKRYVHQNFSY--HYR-ATIGVDFALKVLQWDDKT--------------IVRLQLWDIAG 84 (229)
T ss_pred hhhhhhhheeeeccccchhHHHHHHHHHHHH--HHH-HHHhHHHHHHHhccChHH--------------HHHHHHhcchh
Confidence 3456799999999999999999877222110 110 010 0111112222211 24578999999
Q ss_pred CcCCCCcCcchhhhHhhHHHhcccceEEeecCC
Q 018241 131 LVKGASQGEGLGNKFLSHIREVDSILQVVRCFE 163 (359)
Q Consensus 131 ~~~~~~~~~~~~~~~l~~i~~aD~il~Vvd~~~ 163 (359)
..++.. ...-..+.+....+|+|.+.
T Consensus 85 Qerfg~-------mtrVyykea~~~~iVfdvt~ 110 (229)
T KOG4423|consen 85 QERFGN-------MTRVYYKEAHGAFIVFDVTR 110 (229)
T ss_pred hhhhcc-------eEEEEecCCcceEEEEEccc
Confidence 975544 33334477888889999876
No 414
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=95.79 E-value=0.0075 Score=53.15 Aligned_cols=23 Identities=22% Similarity=0.309 Sum_probs=20.7
Q ss_pred CcEEEEEecCCCChhHHHHHHHh
Q 018241 56 SLRAGIVGLPNVGKSTLFNAVVE 78 (359)
Q Consensus 56 ~~~i~ivG~pn~GKSTL~n~L~~ 78 (359)
+..|+|+|++|+|||||++.|.+
T Consensus 2 g~~i~l~G~sGsGKsTl~~~l~~ 24 (186)
T PRK10078 2 GKLIWLMGPSGSGKDSLLAALRQ 24 (186)
T ss_pred CcEEEEECCCCCCHHHHHHHHhc
Confidence 45799999999999999999983
No 415
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.79 E-value=0.0067 Score=54.40 Aligned_cols=24 Identities=25% Similarity=0.375 Sum_probs=21.4
Q ss_pred CCcEEEEEecCCCChhHHHHHHHhc
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVVEN 79 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~~~ 79 (359)
.+ .++|+|.+|+|||||++.|+|.
T Consensus 25 ~g-~~~i~G~nGsGKSTLl~~l~Gl 48 (211)
T cd03264 25 PG-MYGLLGPNGAGKTTLMRILATL 48 (211)
T ss_pred CC-cEEEECCCCCCHHHHHHHHhCC
Confidence 35 8999999999999999999943
No 416
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=95.78 E-value=0.0068 Score=54.33 Aligned_cols=25 Identities=32% Similarity=0.193 Sum_probs=21.8
Q ss_pred CCcEEEEEecCCCChhHHHHHHHhc
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVVEN 79 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~~~ 79 (359)
.+-.++|+|.+|+|||||++.|+|.
T Consensus 26 ~G~~~~l~G~nGsGKSTLl~~l~G~ 50 (211)
T cd03225 26 KGEFVLIVGPNGSGKSTLLRLLNGL 50 (211)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcC
Confidence 3457999999999999999999953
No 417
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=95.77 E-value=0.011 Score=52.88 Aligned_cols=25 Identities=20% Similarity=0.198 Sum_probs=21.9
Q ss_pred CCcEEEEEecCCCChhHHHHHHHhc
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVVEN 79 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~~~ 79 (359)
.+-.++|+|.+|+|||||++.|+|.
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 49 (205)
T cd03226 25 AGEIIALTGKNGAGKTTLAKILAGL 49 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4458999999999999999999943
No 418
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.74 E-value=0.017 Score=56.97 Aligned_cols=23 Identities=26% Similarity=0.265 Sum_probs=20.4
Q ss_pred CcEEEEEecCCCChhHHHHHHHh
Q 018241 56 SLRAGIVGLPNVGKSTLFNAVVE 78 (359)
Q Consensus 56 ~~~i~ivG~pn~GKSTL~n~L~~ 78 (359)
+..|+++|.+||||||.+..|..
T Consensus 174 ~~vi~lvGptGvGKTTT~aKLA~ 196 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIAKLAA 196 (388)
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999998873
No 419
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=95.73 E-value=0.0072 Score=54.43 Aligned_cols=25 Identities=36% Similarity=0.312 Sum_probs=21.9
Q ss_pred CCcEEEEEecCCCChhHHHHHHHhc
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVVEN 79 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~~~ 79 (359)
.+-.++|+|.+|+|||||++.|+|.
T Consensus 29 ~G~~~~l~G~nGsGKSTLl~~i~Gl 53 (218)
T cd03255 29 KGEFVAIVGPSGSGKSTLLNILGGL 53 (218)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCC
Confidence 4457999999999999999999943
No 420
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=95.73 E-value=0.01 Score=53.58 Aligned_cols=25 Identities=20% Similarity=0.328 Sum_probs=21.8
Q ss_pred CCcEEEEEecCCCChhHHHHHHHhc
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVVEN 79 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~~~ 79 (359)
.+-.++|+|.+|+|||||++.|.|.
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 49 (222)
T cd03224 25 EGEIVALLGRNGAGKTTLLKTIMGL 49 (222)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCC
Confidence 3457999999999999999999943
No 421
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=95.72 E-value=0.0068 Score=53.44 Aligned_cols=25 Identities=24% Similarity=0.206 Sum_probs=21.7
Q ss_pred CCcEEEEEecCCCChhHHHHHHHhc
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVVEN 79 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~~~ 79 (359)
.+-.++|+|.+|+|||||++.|+|.
T Consensus 17 ~Ge~~~i~G~nGsGKSTLl~~i~G~ 41 (190)
T TIGR01166 17 RGEVLALLGANGAGKSTLLLHLNGL 41 (190)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3457999999999999999999943
No 422
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=95.71 E-value=0.0074 Score=54.20 Aligned_cols=25 Identities=20% Similarity=0.183 Sum_probs=21.8
Q ss_pred CCcEEEEEecCCCChhHHHHHHHhc
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVVEN 79 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~~~ 79 (359)
.+-.++|+|.+|+|||||++.|+|.
T Consensus 27 ~G~~~~l~G~nGsGKSTLl~~i~Gl 51 (214)
T TIGR02673 27 KGEFLFLTGPSGAGKTTLLKLLYGA 51 (214)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3457999999999999999999953
No 423
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=95.71 E-value=0.0081 Score=52.75 Aligned_cols=26 Identities=27% Similarity=0.325 Sum_probs=22.6
Q ss_pred cCCcEEEEEecCCCChhHHHHHHHhc
Q 018241 54 SMSLRAGIVGLPNVGKSTLFNAVVEN 79 (359)
Q Consensus 54 ~~~~~i~ivG~pn~GKSTL~n~L~~~ 79 (359)
..+-.++|+|.+|+|||||++.|+|.
T Consensus 23 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl 48 (177)
T cd03222 23 KEGEVIGIVGPNGTGKTTAVKILAGQ 48 (177)
T ss_pred CCCCEEEEECCCCChHHHHHHHHHcC
Confidence 34568999999999999999999954
No 424
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.71 E-value=0.0075 Score=54.49 Aligned_cols=25 Identities=20% Similarity=0.250 Sum_probs=21.8
Q ss_pred CCcEEEEEecCCCChhHHHHHHHhc
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVVEN 79 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~~~ 79 (359)
.+-.++|+|.+|+|||||++.|+|.
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~i~G~ 49 (220)
T cd03265 25 RGEIFGLLGPNGAGKTTTIKMLTTL 49 (220)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3457999999999999999999953
No 425
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=95.70 E-value=0.011 Score=53.33 Aligned_cols=25 Identities=32% Similarity=0.286 Sum_probs=21.9
Q ss_pred CCcEEEEEecCCCChhHHHHHHHhc
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVVEN 79 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~~~ 79 (359)
.+-.++|+|.+|+|||||++.|+|.
T Consensus 30 ~G~~~~i~G~nGsGKSTLl~~i~G~ 54 (221)
T TIGR02211 30 KGEIVAIVGSSGSGKSTLLHLLGGL 54 (221)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 4458999999999999999999944
No 426
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=95.69 E-value=0.0083 Score=53.82 Aligned_cols=24 Identities=29% Similarity=0.372 Sum_probs=21.5
Q ss_pred CCcEEEEEecCCCChhHHHHHHHh
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVVE 78 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~~ 78 (359)
.+.-|+|+|.+|+|||||.++|++
T Consensus 5 ~g~vi~I~G~sGsGKSTl~~~l~~ 28 (207)
T TIGR00235 5 KGIIIGIGGGSGSGKTTVARKIYE 28 (207)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHH
Confidence 346799999999999999999994
No 427
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=95.69 E-value=0.026 Score=42.90 Aligned_cols=67 Identities=18% Similarity=0.149 Sum_probs=43.9
Q ss_pred EEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCCcCCCCcC
Q 018241 59 AGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGASQG 138 (359)
Q Consensus 59 i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~~~~~~~ 138 (359)
+++.|.+|+||||+.+.|. ......+ ... +.++ .+.++|+||.......
T Consensus 2 ~~~~g~~G~Gktt~~~~l~-~~l~~~g--------~~v--~~~~-------------------d~iivD~~~~~~~~~~- 50 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLA-AALAKRG--------KRV--LLID-------------------DYVLIDTPPGLGLLVL- 50 (99)
T ss_pred EEEECCCCCCHHHHHHHHH-HHHHHCC--------CeE--EEEC-------------------CEEEEeCCCCccchhh-
Confidence 6788999999999999998 4433211 111 1111 3899999998643210
Q ss_pred cchhhhHhhHHHhcccceEEeec
Q 018241 139 EGLGNKFLSHIREVDSILQVVRC 161 (359)
Q Consensus 139 ~~~~~~~l~~i~~aD~il~Vvd~ 161 (359)
.....+..+|.++++++.
T Consensus 51 -----~~~~~~~~~~~vi~v~~~ 68 (99)
T cd01983 51 -----LCLLALLAADLVIIVTTP 68 (99)
T ss_pred -----hhhhhhhhCCEEEEecCC
Confidence 024556778999999875
No 428
>KOG3887 consensus Predicted small GTPase involved in nuclear protein import [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.68 E-value=0.019 Score=52.35 Aligned_cols=87 Identities=20% Similarity=0.262 Sum_probs=51.2
Q ss_pred CCcEEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCCCc--cchhccccccccccCceEEEEecCCCc
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPR--LHVLSGLSKSQKAVPASVEFVDIAGLV 132 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~~r--~~~l~~~~~~~~~~~~~i~lvDtpG~~ 132 (359)
+.++|.++|.--+||||+-.... .+-. |+.-..-....+ .+.++ + . ...+.+||.||..
T Consensus 26 ~kp~ilLMG~rRsGKsSI~KVVF-hkMs-----------PneTlflESTski~~d~is---~--s--finf~v~dfPGQ~ 86 (347)
T KOG3887|consen 26 MKPRILLMGLRRSGKSSIQKVVF-HKMS-----------PNETLFLESTSKITRDHIS---N--S--FINFQVWDFPGQM 86 (347)
T ss_pred CCceEEEEeecccCcchhhheee-eccC-----------CCceeEeeccCcccHhhhh---h--h--hcceEEeecCCcc
Confidence 44679999999999999877666 2211 111111000000 11111 1 1 2458999999997
Q ss_pred CCCCcCcchhhhHhhHHHhcccceEEeecCCC
Q 018241 133 KGASQGEGLGNKFLSHIREVDSILQVVRCFED 164 (359)
Q Consensus 133 ~~~~~~~~~~~~~l~~i~~aD~il~Vvd~~~~ 164 (359)
.+-...- .+..-.+.+-++++|+|+.++
T Consensus 87 ~~Fd~s~----D~e~iF~~~gALifvIDaQdd 114 (347)
T KOG3887|consen 87 DFFDPSF----DYEMIFRGVGALIFVIDAQDD 114 (347)
T ss_pred ccCCCcc----CHHHHHhccCeEEEEEechHH
Confidence 5543211 234455789999999999773
No 429
>PRK08118 topology modulation protein; Reviewed
Probab=95.68 E-value=0.0088 Score=51.96 Aligned_cols=21 Identities=29% Similarity=0.292 Sum_probs=20.0
Q ss_pred cEEEEEecCCCChhHHHHHHH
Q 018241 57 LRAGIVGLPNVGKSTLFNAVV 77 (359)
Q Consensus 57 ~~i~ivG~pn~GKSTL~n~L~ 77 (359)
.+|.|+|.||||||||...|.
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~ 22 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLG 22 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 589999999999999999998
No 430
>PRK14530 adenylate kinase; Provisional
Probab=95.68 E-value=0.0087 Score=54.00 Aligned_cols=23 Identities=26% Similarity=0.362 Sum_probs=21.1
Q ss_pred CCcEEEEEecCCCChhHHHHHHH
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVV 77 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~ 77 (359)
+.++|.|+|.|||||||+.+.|.
T Consensus 2 ~~~~I~i~G~pGsGKsT~~~~La 24 (215)
T PRK14530 2 SQPRILLLGAPGAGKGTQSSNLA 24 (215)
T ss_pred CCCEEEEECCCCCCHHHHHHHHH
Confidence 34689999999999999999998
No 431
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=95.65 E-value=0.011 Score=53.49 Aligned_cols=25 Identities=36% Similarity=0.417 Sum_probs=21.9
Q ss_pred CCcEEEEEecCCCChhHHHHHHHhc
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVVEN 79 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~~~ 79 (359)
.+-.++|+|.+|+|||||++.|+|.
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~G~ 54 (228)
T cd03257 30 KGETLGLVGESGSGKSTLARAILGL 54 (228)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3458999999999999999999943
No 432
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=95.65 E-value=0.0089 Score=49.74 Aligned_cols=19 Identities=37% Similarity=0.476 Sum_probs=18.0
Q ss_pred EEEEecCCCChhHHHHHHH
Q 018241 59 AGIVGLPNVGKSTLFNAVV 77 (359)
Q Consensus 59 i~ivG~pn~GKSTL~n~L~ 77 (359)
|.++|+|+|||||+...|.
T Consensus 2 ii~~G~pgsGKSt~a~~l~ 20 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLA 20 (143)
T ss_dssp EEEEESTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 6789999999999999998
No 433
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=95.64 E-value=0.012 Score=51.57 Aligned_cols=25 Identities=28% Similarity=0.333 Sum_probs=21.8
Q ss_pred CCcEEEEEecCCCChhHHHHHHHhc
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVVEN 79 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~~~ 79 (359)
.+-.++|+|.+|+|||||++.|+|.
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~G~ 49 (182)
T cd03215 25 AGEIVGIAGLVGNGQTELAEALFGL 49 (182)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 3457999999999999999999944
No 434
>PRK05480 uridine/cytidine kinase; Provisional
Probab=95.61 E-value=0.01 Score=53.25 Aligned_cols=24 Identities=29% Similarity=0.441 Sum_probs=21.9
Q ss_pred CCcEEEEEecCCCChhHHHHHHHh
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVVE 78 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~~ 78 (359)
.++.|+|.|.+|||||||.++|.+
T Consensus 5 ~~~iI~I~G~sGsGKTTl~~~l~~ 28 (209)
T PRK05480 5 KPIIIGIAGGSGSGKTTVASTIYE 28 (209)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 457999999999999999999993
No 435
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=95.60 E-value=0.0087 Score=53.64 Aligned_cols=25 Identities=28% Similarity=0.250 Sum_probs=21.9
Q ss_pred CCcEEEEEecCCCChhHHHHHHHhc
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVVEN 79 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~~~ 79 (359)
.+-.++|+|.+|+|||||++.|+|.
T Consensus 25 ~G~~~~l~G~nGsGKSTLl~~l~G~ 49 (213)
T cd03262 25 KGEVVVIIGPSGSGKSTLLRCINLL 49 (213)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3457999999999999999999953
No 436
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=95.59 E-value=0.014 Score=53.25 Aligned_cols=25 Identities=32% Similarity=0.276 Sum_probs=21.8
Q ss_pred CCcEEEEEecCCCChhHHHHHHHhc
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVVEN 79 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~~~ 79 (359)
.+-.++|+|.+|+|||||++.|+|.
T Consensus 34 ~Ge~~~l~G~nGsGKSTLl~~l~Gl 58 (233)
T PRK11629 34 EGEMMAIVGSSGSGKSTLLHLLGGL 58 (233)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcC
Confidence 3457999999999999999999943
No 437
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=95.59 E-value=0.0088 Score=53.65 Aligned_cols=25 Identities=28% Similarity=0.324 Sum_probs=21.8
Q ss_pred CCcEEEEEecCCCChhHHHHHHHhc
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVVEN 79 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~~~ 79 (359)
.+-.++|+|.+|+|||||++.|+|.
T Consensus 26 ~G~~~~i~G~nGsGKSTLl~~l~G~ 50 (214)
T cd03292 26 AGEFVFLVGPSGAGKSTLLKLIYKE 50 (214)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3457999999999999999999953
No 438
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=95.59 E-value=0.007 Score=52.00 Aligned_cols=20 Identities=45% Similarity=0.655 Sum_probs=16.7
Q ss_pred EEEEEecCCCChhHHHHHHH
Q 018241 58 RAGIVGLPNVGKSTLFNAVV 77 (359)
Q Consensus 58 ~i~ivG~pn~GKSTL~n~L~ 77 (359)
||+|.|-|++|||||+++|.
T Consensus 1 rI~i~G~~stGKTTL~~~L~ 20 (163)
T PF13521_consen 1 RIVITGGPSTGKTTLIEALA 20 (163)
T ss_dssp -EEEE--TTSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHH
Confidence 69999999999999999998
No 439
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=95.58 E-value=0.0088 Score=53.93 Aligned_cols=25 Identities=20% Similarity=0.315 Sum_probs=21.7
Q ss_pred CCcEEEEEecCCCChhHHHHHHHhc
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVVEN 79 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~~~ 79 (359)
.+-.++|+|.+|+|||||++.|+|.
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (220)
T cd03263 27 KGEIFGLLGHNGAGKTTTLKMLTGE 51 (220)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 3447999999999999999999943
No 440
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=95.58 E-value=0.0091 Score=54.16 Aligned_cols=25 Identities=24% Similarity=0.301 Sum_probs=22.0
Q ss_pred CCcEEEEEecCCCChhHHHHHHHhc
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVVEN 79 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~~~ 79 (359)
.+-.++|+|.+|+|||||++.|+|.
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~i~G~ 49 (227)
T cd03260 25 KGEITALIGPSGCGKSTLLRLLNRL 49 (227)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhh
Confidence 4457999999999999999999954
No 441
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=95.56 E-value=0.012 Score=55.81 Aligned_cols=24 Identities=25% Similarity=0.361 Sum_probs=21.1
Q ss_pred CcEEEEEecCCCChhHHHHHHHhc
Q 018241 56 SLRAGIVGLPNVGKSTLFNAVVEN 79 (359)
Q Consensus 56 ~~~i~ivG~pn~GKSTL~n~L~~~ 79 (359)
+--+|++|++|||||||++.|+|.
T Consensus 31 Gei~gllG~NGAGKTTllk~l~gl 54 (293)
T COG1131 31 GEIFGLLGPNGAGKTTLLKILAGL 54 (293)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCC
Confidence 346899999999999999999943
No 442
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=95.56 E-value=0.009 Score=54.35 Aligned_cols=25 Identities=28% Similarity=0.395 Sum_probs=21.8
Q ss_pred CCcEEEEEecCCCChhHHHHHHHhc
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVVEN 79 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~~~ 79 (359)
.+-.++|+|.+|+|||||++.|+|.
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~Gl 49 (232)
T cd03218 25 QGEIVGLLGPNGAGKTTTFYMIVGL 49 (232)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 3457999999999999999999943
No 443
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=95.55 E-value=0.011 Score=52.25 Aligned_cols=24 Identities=33% Similarity=0.368 Sum_probs=21.4
Q ss_pred CCcEEEEEecCCCChhHHHHHHHh
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVVE 78 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~~ 78 (359)
..-.++|+|.+|+|||||+++|++
T Consensus 24 ~g~~i~I~G~tGSGKTTll~aL~~ 47 (186)
T cd01130 24 ARKNILISGGTGSGKTTLLNALLA 47 (186)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHh
Confidence 345899999999999999999994
No 444
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=95.55 E-value=0.01 Score=51.92 Aligned_cols=23 Identities=26% Similarity=0.394 Sum_probs=20.8
Q ss_pred CCcEEEEEecCCCChhHHHHHHH
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVV 77 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~ 77 (359)
+..-++|+|++|+|||||+++|.
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li 27 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLI 27 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHH
Confidence 34578999999999999999998
No 445
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.54 E-value=0.0093 Score=53.87 Aligned_cols=25 Identities=28% Similarity=0.318 Sum_probs=21.7
Q ss_pred CCcEEEEEecCCCChhHHHHHHHhc
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVVEN 79 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~~~ 79 (359)
.+-.++|+|.+|+|||||++.|+|.
T Consensus 29 ~G~~~~i~G~nGsGKSTLl~~l~Gl 53 (220)
T cd03293 29 EGEFVALVGPSGCGKSTLLRIIAGL 53 (220)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 3457999999999999999999943
No 446
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.54 E-value=0.0095 Score=53.37 Aligned_cols=25 Identities=20% Similarity=0.282 Sum_probs=21.8
Q ss_pred CCcEEEEEecCCCChhHHHHHHHhc
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVVEN 79 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~~~ 79 (359)
.+-.++|+|.+|+|||||++.|+|.
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~G~ 49 (210)
T cd03269 25 KGEIFGLLGPNGAGKTTTIRMILGI 49 (210)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 3457999999999999999999953
No 447
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.54 E-value=0.0097 Score=51.99 Aligned_cols=25 Identities=24% Similarity=0.328 Sum_probs=21.8
Q ss_pred CCcEEEEEecCCCChhHHHHHHHhc
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVVEN 79 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~~~ 79 (359)
.+-.++|+|.+|+|||||++.|+|.
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~G~ 49 (178)
T cd03229 25 AGEIVALLGPSGSGKSTLLRCIAGL 49 (178)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3457999999999999999999943
No 448
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=95.53 E-value=0.0097 Score=52.86 Aligned_cols=25 Identities=20% Similarity=0.288 Sum_probs=22.0
Q ss_pred CCcEEEEEecCCCChhHHHHHHHhc
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVVEN 79 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~~~ 79 (359)
.+-.++|+|.+|+|||||++.|+|.
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~G~ 49 (198)
T TIGR01189 25 AGEALQVTGPNGIGKTTLLRILAGL 49 (198)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 4458999999999999999999953
No 449
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=95.52 E-value=0.013 Score=53.27 Aligned_cols=25 Identities=24% Similarity=0.345 Sum_probs=21.9
Q ss_pred CCcEEEEEecCCCChhHHHHHHHhc
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVVEN 79 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~~~ 79 (359)
.+-.++|+|.+|+|||||++.|+|.
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~G~ 49 (230)
T TIGR03410 25 KGEVTCVLGRNGVGKTTLLKTLMGL 49 (230)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4458999999999999999999943
No 450
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=95.51 E-value=0.0099 Score=53.01 Aligned_cols=25 Identities=20% Similarity=0.234 Sum_probs=22.0
Q ss_pred CCcEEEEEecCCCChhHHHHHHHhc
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVVEN 79 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~~~ 79 (359)
.+-.++|+|.+|+|||||++.|+|.
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~G~ 49 (201)
T cd03231 25 AGEALQVTGPNGSGKTTLLRILAGL 49 (201)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4458999999999999999999943
No 451
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=95.49 E-value=0.015 Score=52.04 Aligned_cols=25 Identities=20% Similarity=0.270 Sum_probs=21.8
Q ss_pred CCcEEEEEecCCCChhHHHHHHHhc
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVVEN 79 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~~~ 79 (359)
.+-.++|+|.+|+|||||++.|+|.
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~Gl 49 (208)
T cd03268 25 KGEIYGFLGPNGAGKTTTMKIILGL 49 (208)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 3457899999999999999999953
No 452
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=95.49 E-value=0.01 Score=52.87 Aligned_cols=25 Identities=20% Similarity=0.195 Sum_probs=22.0
Q ss_pred CCcEEEEEecCCCChhHHHHHHHhc
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVVEN 79 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~~~ 79 (359)
.+-.++|+|.+|+|||||++.|+|.
T Consensus 26 ~Ge~~~l~G~nGsGKSTLl~~i~G~ 50 (200)
T PRK13540 26 AGGLLHLKGSNGAGKTTLLKLIAGL 50 (200)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4458999999999999999999954
No 453
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=95.49 E-value=0.0098 Score=54.51 Aligned_cols=25 Identities=28% Similarity=0.328 Sum_probs=21.8
Q ss_pred CCcEEEEEecCCCChhHHHHHHHhc
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVVEN 79 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~~~ 79 (359)
.+-.++|+|.+|+|||||++.|+|.
T Consensus 27 ~Ge~~~l~G~nGsGKSTLl~~l~Gl 51 (243)
T TIGR02315 27 PGEFVAIIGPSGAGKSTLLRCINRL 51 (243)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3457999999999999999999943
No 454
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=95.49 E-value=0.012 Score=56.66 Aligned_cols=36 Identities=22% Similarity=0.325 Sum_probs=28.0
Q ss_pred cEEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCCC
Q 018241 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDP 104 (359)
Q Consensus 57 ~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~~ 104 (359)
--++++|++|||||||++.+.|-.. |..|.+.+++.
T Consensus 30 ef~vllGPSGcGKSTlLr~IAGLe~------------~~~G~I~i~g~ 65 (338)
T COG3839 30 EFVVLLGPSGCGKSTLLRMIAGLEE------------PTSGEILIDGR 65 (338)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC------------CCCceEEECCE
Confidence 4689999999999999999995432 55676766653
No 455
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.49 E-value=0.015 Score=54.63 Aligned_cols=25 Identities=32% Similarity=0.413 Sum_probs=21.8
Q ss_pred CCcEEEEEecCCCChhHHHHHHHhc
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVVEN 79 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~~~ 79 (359)
.+=.++|+|.+|+|||||++.|+|.
T Consensus 29 ~Ge~~~i~G~NGsGKSTLl~~l~Gl 53 (277)
T PRK13652 29 RNSRIAVIGPNGAGKSTLFRHFNGI 53 (277)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3457899999999999999999944
No 456
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=95.48 E-value=0.011 Score=47.84 Aligned_cols=19 Identities=37% Similarity=0.740 Sum_probs=18.3
Q ss_pred EEEEecCCCChhHHHHHHH
Q 018241 59 AGIVGLPNVGKSTLFNAVV 77 (359)
Q Consensus 59 i~ivG~pn~GKSTL~n~L~ 77 (359)
|+|.|.|||||||+.+.|.
T Consensus 1 I~i~G~~GsGKtTia~~L~ 19 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELA 19 (129)
T ss_dssp EEEEESTTSSHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHH
Confidence 7899999999999999998
No 457
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.48 E-value=0.01 Score=54.10 Aligned_cols=25 Identities=32% Similarity=0.373 Sum_probs=22.0
Q ss_pred CCcEEEEEecCCCChhHHHHHHHhc
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVVEN 79 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~~~ 79 (359)
.+-.++|+|.+|+|||||++.|+|.
T Consensus 30 ~Ge~~~l~G~nGsGKSTLl~~l~G~ 54 (233)
T cd03258 30 KGEIFGIIGRSGAGKSTLIRCINGL 54 (233)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4458999999999999999999944
No 458
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=95.48 E-value=0.024 Score=51.84 Aligned_cols=27 Identities=37% Similarity=0.346 Sum_probs=23.1
Q ss_pred CCcEEEEEecCCCChhHHHHHHHhccc
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVVENGK 81 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~~~~~ 81 (359)
.+-.+||||.+|+|||||.++|.|-..
T Consensus 32 ~Ge~lgivGeSGsGKSTL~r~l~Gl~~ 58 (252)
T COG1124 32 RGETLGIVGESGSGKSTLARLLAGLEK 58 (252)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhcccC
Confidence 445899999999999999999996544
No 459
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=95.47 E-value=0.015 Score=54.43 Aligned_cols=25 Identities=40% Similarity=0.489 Sum_probs=22.0
Q ss_pred CCcEEEEEecCCCChhHHHHHHHhc
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVVEN 79 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~~~ 79 (359)
.+-.++|+|.+|+|||||++.|+|.
T Consensus 32 ~Ge~~~l~G~nGsGKSTLl~~l~Gl 56 (272)
T PRK15056 32 GGSIAALVGVNGSGKSTLFKALMGF 56 (272)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4458999999999999999999954
No 460
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=95.47 E-value=0.01 Score=54.79 Aligned_cols=25 Identities=20% Similarity=0.341 Sum_probs=21.9
Q ss_pred CCcEEEEEecCCCChhHHHHHHHhc
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVVEN 79 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~~~ 79 (359)
.+-.++|+|.+|+|||||++.|+|.
T Consensus 31 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 55 (253)
T PRK14242 31 QNQVTALIGPSGCGKSTFLRCLNRM 55 (253)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhh
Confidence 3457999999999999999999954
No 461
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=95.47 E-value=0.01 Score=52.75 Aligned_cols=20 Identities=35% Similarity=0.599 Sum_probs=18.8
Q ss_pred EEEEecCCCChhHHHHHHHh
Q 018241 59 AGIVGLPNVGKSTLFNAVVE 78 (359)
Q Consensus 59 i~ivG~pn~GKSTL~n~L~~ 78 (359)
|||+|.+|||||||.+.|.+
T Consensus 2 igi~G~~GsGKSTl~~~l~~ 21 (198)
T cd02023 2 IGIAGGSGSGKTTVAEEIIE 21 (198)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 79999999999999999983
No 462
>PRK03839 putative kinase; Provisional
Probab=95.46 E-value=0.011 Score=51.66 Aligned_cols=21 Identities=33% Similarity=0.558 Sum_probs=19.6
Q ss_pred cEEEEEecCCCChhHHHHHHH
Q 018241 57 LRAGIVGLPNVGKSTLFNAVV 77 (359)
Q Consensus 57 ~~i~ivG~pn~GKSTL~n~L~ 77 (359)
++|.|+|.||+||||+-..|.
T Consensus 1 m~I~l~G~pGsGKsT~~~~La 21 (180)
T PRK03839 1 MIIAITGTPGVGKTTVSKLLA 21 (180)
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 479999999999999999998
No 463
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=95.46 E-value=0.013 Score=49.50 Aligned_cols=22 Identities=32% Similarity=0.490 Sum_probs=19.6
Q ss_pred cEEEEEecCCCChhHHHHHHHh
Q 018241 57 LRAGIVGLPNVGKSTLFNAVVE 78 (359)
Q Consensus 57 ~~i~ivG~pn~GKSTL~n~L~~ 78 (359)
+.|+|+|+.|+|||||+..|.+
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~ 22 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLIN 22 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999983
No 464
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=95.45 E-value=0.0095 Score=53.49 Aligned_cols=23 Identities=35% Similarity=0.419 Sum_probs=20.5
Q ss_pred cEEEEEecCCCChhHHHHHHHhc
Q 018241 57 LRAGIVGLPNVGKSTLFNAVVEN 79 (359)
Q Consensus 57 ~~i~ivG~pn~GKSTL~n~L~~~ 79 (359)
--++|+|+.|+|||||+.+|+|.
T Consensus 28 ev~ailGPNGAGKSTlLk~LsGe 50 (259)
T COG4559 28 EVLAILGPNGAGKSTLLKALSGE 50 (259)
T ss_pred cEEEEECCCCccHHHHHHHhhCc
Confidence 45899999999999999999943
No 465
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=95.45 E-value=0.011 Score=53.38 Aligned_cols=25 Identities=20% Similarity=0.173 Sum_probs=22.0
Q ss_pred CCcEEEEEecCCCChhHHHHHHHhc
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVVEN 79 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~~~ 79 (359)
.+-.++|+|.+|+|||||++.|+|.
T Consensus 36 ~Ge~~~i~G~nGsGKSTLl~~i~G~ 60 (214)
T PRK13543 36 AGEALLVQGDNGAGKTTLLRVLAGL 60 (214)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCC
Confidence 4458999999999999999999953
No 466
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=95.44 E-value=0.013 Score=51.46 Aligned_cols=24 Identities=29% Similarity=0.455 Sum_probs=21.2
Q ss_pred cCCcEEEEEecCCCChhHHHHHHH
Q 018241 54 SMSLRAGIVGLPNVGKSTLFNAVV 77 (359)
Q Consensus 54 ~~~~~i~ivG~pn~GKSTL~n~L~ 77 (359)
..+-.++|+|.+|+|||||++++.
T Consensus 19 ~~G~~~~l~G~nG~GKSTLl~~il 42 (176)
T cd03238 19 PLNVLVVVTGVSGSGKSTLVNEGL 42 (176)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHh
Confidence 345689999999999999999987
No 467
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.44 E-value=0.024 Score=60.19 Aligned_cols=24 Identities=25% Similarity=0.272 Sum_probs=21.0
Q ss_pred CcEEEEEecCCCChhHHHHHHHhc
Q 018241 56 SLRAGIVGLPNVGKSTLFNAVVEN 79 (359)
Q Consensus 56 ~~~i~ivG~pn~GKSTL~n~L~~~ 79 (359)
+-.|++||.+||||||++..|.+.
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~ 208 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAAR 208 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhh
Confidence 347899999999999999999953
No 468
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=95.43 E-value=0.011 Score=53.31 Aligned_cols=25 Identities=20% Similarity=0.283 Sum_probs=21.7
Q ss_pred CCcEEEEEecCCCChhHHHHHHHhc
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVVEN 79 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~~~ 79 (359)
.+-.++|+|.+|+|||||++.|+|.
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 54 (218)
T cd03266 30 PGEVTGLLGPNGAGKTTTLRMLAGL 54 (218)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 3457999999999999999999943
No 469
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=95.43 E-value=0.01 Score=60.83 Aligned_cols=27 Identities=33% Similarity=0.436 Sum_probs=23.6
Q ss_pred CCcEEEEEecCCCChhHHHHHHHhccc
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVVENGK 81 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~~~~~ 81 (359)
.+-+|||||..|+|||||++.|+|...
T Consensus 28 ~G~riGLvG~NGaGKSTLLkilaG~~~ 54 (530)
T COG0488 28 PGERIGLVGRNGAGKSTLLKILAGELE 54 (530)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCCCc
Confidence 456999999999999999999996553
No 470
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=95.43 E-value=0.014 Score=54.06 Aligned_cols=25 Identities=40% Similarity=0.490 Sum_probs=22.0
Q ss_pred CCcEEEEEecCCCChhHHHHHHHhc
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVVEN 79 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~~~ 79 (359)
.+-.++|+|.+|+|||||++.|+|.
T Consensus 31 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 55 (258)
T PRK11701 31 PGEVLGIVGESGSGKTTLLNALSAR 55 (258)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4458999999999999999999943
No 471
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=95.42 E-value=0.015 Score=59.12 Aligned_cols=24 Identities=33% Similarity=0.459 Sum_probs=21.5
Q ss_pred CcEEEEEecCCCChhHHHHHHHhc
Q 018241 56 SLRAGIVGLPNVGKSTLFNAVVEN 79 (359)
Q Consensus 56 ~~~i~ivG~pn~GKSTL~n~L~~~ 79 (359)
+-+++|||.+|+|||||+|.|.|-
T Consensus 347 g~~talvG~SGaGKSTLl~lL~G~ 370 (559)
T COG4988 347 GQLTALVGASGAGKSTLLNLLLGF 370 (559)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCc
Confidence 358999999999999999999944
No 472
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=95.40 E-value=0.01 Score=53.24 Aligned_cols=25 Identities=36% Similarity=0.367 Sum_probs=21.8
Q ss_pred CCcEEEEEecCCCChhHHHHHHHhc
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVVEN 79 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~~~ 79 (359)
.+-.++|+|.+|+|||||++.|.|.
T Consensus 24 ~Ge~~~l~G~nGsGKSTLl~~l~G~ 48 (213)
T cd03235 24 PGEFLAIVGPNGAGKSTLLKAILGL 48 (213)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCC
Confidence 3457999999999999999999953
No 473
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=95.40 E-value=0.011 Score=54.44 Aligned_cols=25 Identities=24% Similarity=0.278 Sum_probs=21.8
Q ss_pred CCcEEEEEecCCCChhHHHHHHHhc
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVVEN 79 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~~~ 79 (359)
.+-.++|+|.+|+|||||++.|+|.
T Consensus 28 ~Ge~~~i~G~nGsGKSTLl~~l~G~ 52 (250)
T PRK11264 28 PGEVVAIIGPSGSGKTTLLRCINLL 52 (250)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4457999999999999999999943
No 474
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=95.40 E-value=0.013 Score=50.48 Aligned_cols=25 Identities=24% Similarity=0.251 Sum_probs=22.1
Q ss_pred CCcEEEEEecCCCChhHHHHHHHhc
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVVEN 79 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~~~ 79 (359)
.+-.++|+|.+|+|||||++.|+|.
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~i~G~ 49 (163)
T cd03216 25 RGEVHALLGENGAGKSTLMKILSGL 49 (163)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4568999999999999999999954
No 475
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.39 E-value=0.017 Score=53.94 Aligned_cols=25 Identities=28% Similarity=0.310 Sum_probs=21.9
Q ss_pred CCcEEEEEecCCCChhHHHHHHHhc
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVVEN 79 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~~~ 79 (359)
.+-.++|+|.+|+|||||++.|+|.
T Consensus 34 ~Ge~~~I~G~nGsGKSTLl~~i~Gl 58 (269)
T PRK13648 34 KGQWTSIVGHNGSGKSTIAKLMIGI 58 (269)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4458999999999999999999944
No 476
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=95.38 E-value=0.012 Score=52.89 Aligned_cols=25 Identities=16% Similarity=0.154 Sum_probs=21.9
Q ss_pred CCcEEEEEecCCCChhHHHHHHHhc
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVVEN 79 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~~~ 79 (359)
.+-.++|+|.+|+|||||++.|+|.
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~G~ 49 (213)
T cd03301 25 DGEFVVLLGPSGCGKTTTLRMIAGL 49 (213)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 4457999999999999999999954
No 477
>PRK10908 cell division protein FtsE; Provisional
Probab=95.38 E-value=0.011 Score=53.37 Aligned_cols=25 Identities=28% Similarity=0.251 Sum_probs=22.0
Q ss_pred CCcEEEEEecCCCChhHHHHHHHhc
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVVEN 79 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~~~ 79 (359)
.+-.++|+|.+|+|||||++.|+|.
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~G~ 51 (222)
T PRK10908 27 PGEMAFLTGHSGAGKSTLLKLICGI 51 (222)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4458999999999999999999943
No 478
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=95.37 E-value=0.017 Score=54.98 Aligned_cols=25 Identities=20% Similarity=0.221 Sum_probs=21.7
Q ss_pred CCcEEEEEecCCCChhHHHHHHHhc
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVVEN 79 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~~~ 79 (359)
.+-.+||+|.+|||||||++.|+|-
T Consensus 18 ~Ge~~~l~G~NGaGKSTLl~~l~Gl 42 (302)
T TIGR01188 18 EGEVFGFLGPNGAGKTTTIRMLTTL 42 (302)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 3457899999999999999999943
No 479
>COG1341 Predicted GTPase or GTP-binding protein [General function prediction only]
Probab=95.36 E-value=0.026 Score=55.17 Aligned_cols=26 Identities=27% Similarity=0.215 Sum_probs=22.3
Q ss_pred cCCcEEEEEecCCCChhHHHHHHHhc
Q 018241 54 SMSLRAGIVGLPNVGKSTLFNAVVEN 79 (359)
Q Consensus 54 ~~~~~i~ivG~pn~GKSTL~n~L~~~ 79 (359)
....+|++||.-+||||||.+-|+++
T Consensus 71 ~~~~~vmvvG~vDSGKSTLt~~LaN~ 96 (398)
T COG1341 71 GKVGVVMVVGPVDSGKSTLTTYLANK 96 (398)
T ss_pred cCCcEEEEECCcCcCHHHHHHHHHHH
Confidence 34579999999999999999888854
No 480
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=95.36 E-value=0.012 Score=54.06 Aligned_cols=25 Identities=20% Similarity=0.207 Sum_probs=21.9
Q ss_pred CCcEEEEEecCCCChhHHHHHHHhc
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVVEN 79 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~~~ 79 (359)
.+-.++|+|.+|+|||||++.|+|.
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~G~ 51 (242)
T PRK11124 27 QGETLVLLGPSGAGKSSLLRVLNLL 51 (242)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3457999999999999999999954
No 481
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=95.35 E-value=0.011 Score=53.67 Aligned_cols=25 Identities=24% Similarity=0.300 Sum_probs=22.0
Q ss_pred CCcEEEEEecCCCChhHHHHHHHhc
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVVEN 79 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~~~ 79 (359)
.+-.++|+|.+|+|||||++.|+|.
T Consensus 35 ~Ge~~~i~G~nGsGKSTLl~~i~Gl 59 (228)
T PRK10584 35 RGETIALIGESGSGKSTLLAILAGL 59 (228)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcC
Confidence 4458999999999999999999954
No 482
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=95.35 E-value=0.011 Score=54.01 Aligned_cols=25 Identities=28% Similarity=0.303 Sum_probs=22.0
Q ss_pred CCcEEEEEecCCCChhHHHHHHHhc
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVVEN 79 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~~~ 79 (359)
.+-.++|+|.+|+|||||++.|+|.
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 49 (243)
T TIGR01978 25 KGEIHAIMGPNGSGKSTLSKTIAGH 49 (243)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4458999999999999999999954
No 483
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=95.35 E-value=0.012 Score=54.73 Aligned_cols=25 Identities=24% Similarity=0.284 Sum_probs=22.0
Q ss_pred CCcEEEEEecCCCChhHHHHHHHhc
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVVEN 79 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~~~ 79 (359)
.+-.++|+|.+|+|||||++.|+|.
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 50 (255)
T PRK11248 26 SGELLVVLGPSGCGKTTLLNLIAGF 50 (255)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4457999999999999999999954
No 484
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.35 E-value=0.012 Score=53.88 Aligned_cols=25 Identities=24% Similarity=0.279 Sum_probs=21.8
Q ss_pred CCcEEEEEecCCCChhHHHHHHHhc
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVVEN 79 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~~~ 79 (359)
.+-.++|+|.+|+|||||++.|+|.
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 50 (241)
T cd03256 26 PGEFVALIGPSGAGKSTLLRCLNGL 50 (241)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3457999999999999999999943
No 485
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.34 E-value=0.012 Score=53.96 Aligned_cols=25 Identities=20% Similarity=0.290 Sum_probs=21.7
Q ss_pred CCcEEEEEecCCCChhHHHHHHHhc
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVVEN 79 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~~~ 79 (359)
.+-.++|+|.+|+|||||++.|+|.
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (239)
T cd03296 27 SGELVALLGPSGSGKTTLLRLIAGL 51 (239)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3457999999999999999999954
No 486
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.34 E-value=0.012 Score=54.30 Aligned_cols=25 Identities=24% Similarity=0.389 Sum_probs=21.8
Q ss_pred CCcEEEEEecCCCChhHHHHHHHhc
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVVEN 79 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~~~ 79 (359)
.+-.++|+|.+|+|||||++.|+|.
T Consensus 28 ~Ge~~~i~G~nGsGKSTLl~~i~Gl 52 (250)
T PRK14262 28 KNQITAIIGPSGCGKTTLLRSINRM 52 (250)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcc
Confidence 3457999999999999999999953
No 487
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.34 E-value=0.017 Score=54.59 Aligned_cols=25 Identities=28% Similarity=0.313 Sum_probs=21.8
Q ss_pred CCcEEEEEecCCCChhHHHHHHHhc
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVVEN 79 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~~~ 79 (359)
.+-.+||+|.+|+|||||++.|+|.
T Consensus 32 ~Ge~~~i~G~nGaGKSTLl~~l~Gl 56 (287)
T PRK13637 32 DGEFVGLIGHTGSGKSTLIQHLNGL 56 (287)
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcC
Confidence 3457999999999999999999943
No 488
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.33 E-value=0.017 Score=54.55 Aligned_cols=25 Identities=28% Similarity=0.255 Sum_probs=21.7
Q ss_pred CCcEEEEEecCCCChhHHHHHHHhc
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVVEN 79 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~~~ 79 (359)
.+=.++|+|.+|+|||||++.|+|.
T Consensus 32 ~Ge~~~iiG~NGaGKSTLl~~l~Gl 56 (287)
T PRK13641 32 EGSFVALVGHTGSGKSTLMQHFNAL 56 (287)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3447999999999999999999943
No 489
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.33 E-value=0.012 Score=53.41 Aligned_cols=25 Identities=32% Similarity=0.401 Sum_probs=21.7
Q ss_pred CCcEEEEEecCCCChhHHHHHHHhc
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVVEN 79 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~~~ 79 (359)
.+-.++|+|.+|+|||||++.|+|.
T Consensus 28 ~G~~~~i~G~nGsGKSTLl~~l~G~ 52 (229)
T cd03254 28 PGETVAIVGPTGAGKTTLINLLMRF 52 (229)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3447999999999999999999954
No 490
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=95.33 E-value=0.014 Score=52.73 Aligned_cols=25 Identities=28% Similarity=0.375 Sum_probs=21.9
Q ss_pred CCcEEEEEecCCCChhHHHHHHHhc
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVVEN 79 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~~~ 79 (359)
.+-.++|+|++|+|||||++.|+|.
T Consensus 12 ~Ge~~~l~G~NGsGKSTLlk~i~Gl 36 (213)
T PRK15177 12 YHEHIGILAAPGSGKTTLTRLLCGL 36 (213)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3457999999999999999999954
No 491
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=95.33 E-value=0.012 Score=52.66 Aligned_cols=25 Identities=20% Similarity=0.211 Sum_probs=22.0
Q ss_pred CCcEEEEEecCCCChhHHHHHHHhc
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVVEN 79 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~~~ 79 (359)
.+-.++|+|.+|+|||||++.|+|.
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~G~ 51 (207)
T PRK13539 27 AGEALVLTGPNGSGKTTLLRLIAGL 51 (207)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4458999999999999999999954
No 492
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=95.33 E-value=0.011 Score=53.84 Aligned_cols=25 Identities=32% Similarity=0.454 Sum_probs=21.7
Q ss_pred CCcEEEEEecCCCChhHHHHHHHhc
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVVEN 79 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~~~ 79 (359)
.+-.++|+|.+|+|||||++.|+|.
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~Gl 49 (236)
T cd03219 25 PGEIHGLIGPNGAGKTTLFNLISGF 49 (236)
T ss_pred CCcEEEEECCCCCCHHHHHHHHcCC
Confidence 3457999999999999999999943
No 493
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.33 E-value=0.012 Score=54.17 Aligned_cols=25 Identities=20% Similarity=0.321 Sum_probs=21.8
Q ss_pred CCcEEEEEecCCCChhHHHHHHHhc
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVVEN 79 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~~~ 79 (359)
.+-.++|+|.+|+|||||++.|+|.
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (246)
T PRK14269 27 QNKITALIGASGCGKSTFLRCFNRM 51 (246)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcc
Confidence 3457999999999999999999953
No 494
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=95.32 E-value=0.012 Score=51.28 Aligned_cols=21 Identities=29% Similarity=0.344 Sum_probs=19.4
Q ss_pred EEEEEecCCCChhHHHHHHHh
Q 018241 58 RAGIVGLPNVGKSTLFNAVVE 78 (359)
Q Consensus 58 ~i~ivG~pn~GKSTL~n~L~~ 78 (359)
.++|+|.||||||||.++|.+
T Consensus 3 ~~~i~G~sGsGKttl~~~l~~ 23 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLLDYARA 23 (179)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999984
No 495
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.32 E-value=0.012 Score=54.25 Aligned_cols=25 Identities=24% Similarity=0.268 Sum_probs=21.9
Q ss_pred CCcEEEEEecCCCChhHHHHHHHhc
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVVEN 79 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~~~ 79 (359)
.+-.++|+|.+|+|||||++.|+|.
T Consensus 28 ~Ge~~~i~G~nGsGKSTLl~~i~G~ 52 (250)
T PRK14247 28 DNTITALMGPSGSGKSTLLRVFNRL 52 (250)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcc
Confidence 3457999999999999999999954
No 496
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=95.32 E-value=0.012 Score=53.74 Aligned_cols=25 Identities=28% Similarity=0.341 Sum_probs=21.9
Q ss_pred CCcEEEEEecCCCChhHHHHHHHhc
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVVEN 79 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~~~ 79 (359)
.+-.++|+|.+|+|||||++.|+|.
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~G~ 50 (236)
T TIGR03864 26 PGEFVALLGPNGAGKSTLFSLLTRL 50 (236)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3457999999999999999999954
No 497
>PRK06217 hypothetical protein; Validated
Probab=95.32 E-value=0.014 Score=51.35 Aligned_cols=21 Identities=33% Similarity=0.445 Sum_probs=20.1
Q ss_pred cEEEEEecCCCChhHHHHHHH
Q 018241 57 LRAGIVGLPNVGKSTLFNAVV 77 (359)
Q Consensus 57 ~~i~ivG~pn~GKSTL~n~L~ 77 (359)
++|.|+|.||||||||..+|.
T Consensus 2 ~~I~i~G~~GsGKSTla~~L~ 22 (183)
T PRK06217 2 MRIHITGASGSGTTTLGAALA 22 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 689999999999999999998
No 498
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=95.31 E-value=0.012 Score=54.68 Aligned_cols=25 Identities=28% Similarity=0.408 Sum_probs=22.2
Q ss_pred CCcEEEEEecCCCChhHHHHHHHhc
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVVEN 79 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~~~ 79 (359)
.+-.++|+|.+|+|||||++.|+|-
T Consensus 25 ~Ge~~~IvG~nGsGKSTLlk~l~Gl 49 (255)
T cd03236 25 EGQVLGLVGPNGIGKSTALKILAGK 49 (255)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4458999999999999999999954
No 499
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=95.31 E-value=0.018 Score=53.27 Aligned_cols=25 Identities=24% Similarity=0.376 Sum_probs=21.9
Q ss_pred CCcEEEEEecCCCChhHHHHHHHhc
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVVEN 79 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~~~ 79 (359)
.+-.++|+|.+|+|||||++.|+|.
T Consensus 30 ~Ge~~~l~G~nGsGKSTLl~~l~Gl 54 (255)
T PRK11300 30 EQEIVSLIGPNGAGKTTVFNCLTGF 54 (255)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCC
Confidence 3457999999999999999999954
No 500
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.31 E-value=0.017 Score=54.01 Aligned_cols=25 Identities=40% Similarity=0.521 Sum_probs=21.7
Q ss_pred CCcEEEEEecCCCChhHHHHHHHhc
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVVEN 79 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~~~ 79 (359)
.+-.++|+|.+|+|||||++.|+|.
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 50 (271)
T PRK13638 26 LSPVTGLVGANGCGKSTLFMNLSGL 50 (271)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCC
Confidence 3457999999999999999999943
Done!