Query 018241
Match_columns 359
No_of_seqs 337 out of 3482
Neff 7.9
Searched_HMMs 29240
Date Mon Mar 25 12:08:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018241.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018241hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1jal_A YCHF protein; nucleotid 100.0 4.3E-60 1.5E-64 457.0 19.8 298 55-359 1-298 (363)
2 2ohf_A Protein OLA1, GTP-bindi 100.0 2.5E-58 8.7E-63 448.6 19.5 303 52-359 18-324 (396)
3 1ni3_A YCHF GTPase, YCHF GTP-b 100.0 3.1E-57 1.1E-61 441.8 25.7 303 53-359 17-326 (392)
4 2dby_A GTP-binding protein; GD 100.0 5E-56 1.7E-60 430.8 26.8 298 57-359 2-303 (368)
5 1wxq_A GTP-binding protein; st 100.0 5.6E-42 1.9E-46 336.0 19.0 291 57-359 1-348 (397)
6 4a9a_A Ribosome-interacting GT 100.0 1.4E-40 4.8E-45 322.5 -1.1 243 55-359 71-319 (376)
7 3iev_A GTP-binding protein ERA 99.9 3.2E-22 1.1E-26 189.6 12.0 192 57-272 11-229 (308)
8 1wf3_A GTP-binding protein; GT 99.9 1.1E-21 3.8E-26 185.3 11.8 187 57-272 8-221 (301)
9 1lnz_A SPO0B-associated GTP-bi 99.8 6.7E-20 2.3E-24 175.9 10.1 150 57-235 159-333 (342)
10 1ega_A Protein (GTP-binding pr 99.8 2.1E-20 7.1E-25 176.6 6.1 187 57-272 9-222 (301)
11 2qtf_A Protein HFLX, GTP-bindi 99.8 4E-19 1.4E-23 172.0 9.3 199 2-233 107-355 (364)
12 1xzp_A Probable tRNA modificat 99.7 2.5E-18 8.5E-23 172.0 10.0 152 50-231 237-404 (482)
13 1mky_A Probable GTP-binding pr 99.7 9.7E-18 3.3E-22 166.2 10.9 146 57-232 2-166 (439)
14 3i8s_A Ferrous iron transport 99.7 6.9E-17 2.4E-21 150.3 14.4 149 56-233 3-170 (274)
15 3lxw_A GTPase IMAP family memb 99.7 8.3E-17 2.8E-21 147.5 13.8 166 54-238 19-215 (247)
16 3iby_A Ferrous iron transport 99.7 8.7E-17 3E-21 148.3 12.4 143 57-229 2-164 (256)
17 2gj8_A MNME, tRNA modification 99.7 2.4E-17 8.2E-22 142.2 8.1 143 55-231 3-165 (172)
18 4dhe_A Probable GTP-binding pr 99.7 3.2E-17 1.1E-21 146.5 8.4 156 55-232 28-211 (223)
19 3gee_A MNME, tRNA modification 99.7 1.3E-17 4.6E-22 166.6 6.5 153 49-231 226-397 (476)
20 2hjg_A GTP-binding protein ENG 99.7 2.4E-17 8.2E-22 163.3 6.4 145 57-232 4-165 (436)
21 3a1s_A Iron(II) transport prot 99.7 5E-16 1.7E-20 143.3 14.1 147 56-232 5-167 (258)
22 2dyk_A GTP-binding protein; GT 99.7 1.7E-16 5.9E-21 133.7 9.6 144 57-231 2-161 (161)
23 3b1v_A Ferrous iron uptake tra 99.7 3.5E-16 1.2E-20 145.5 12.4 146 56-232 3-164 (272)
24 2xtp_A GTPase IMAP family memb 99.7 1.3E-15 4.5E-20 139.9 15.5 165 55-238 21-215 (260)
25 2hjg_A GTP-binding protein ENG 99.7 8.8E-17 3E-21 159.2 7.0 156 55-232 174-349 (436)
26 3geh_A MNME, tRNA modification 99.6 3.2E-17 1.1E-21 163.2 3.3 154 49-233 217-385 (462)
27 2wji_A Ferrous iron transport 99.6 1.6E-15 5.3E-20 129.6 13.2 145 57-231 4-164 (165)
28 3pqc_A Probable GTP-binding pr 99.6 1.3E-15 4.4E-20 132.4 11.8 151 55-232 22-194 (195)
29 3k53_A Ferrous iron transport 99.6 3.2E-15 1.1E-19 138.6 14.5 149 56-234 3-168 (271)
30 1udx_A The GTP-binding protein 99.6 1.4E-15 4.7E-20 149.4 12.2 150 56-234 157-327 (416)
31 1svi_A GTP-binding protein YSX 99.6 1.5E-15 5.1E-20 132.4 10.8 148 55-231 22-194 (195)
32 1mky_A Probable GTP-binding pr 99.6 8E-16 2.7E-20 152.4 10.0 153 55-232 179-355 (439)
33 4dcu_A GTP-binding protein ENG 99.6 3.5E-16 1.2E-20 155.7 7.4 154 54-232 193-369 (456)
34 4dcu_A GTP-binding protein ENG 99.6 2.6E-16 8.9E-21 156.7 6.3 106 56-178 23-145 (456)
35 3lxx_A GTPase IMAP family memb 99.6 4.6E-15 1.6E-19 134.7 13.7 158 55-232 28-214 (239)
36 2g6b_A RAS-related protein RAB 99.6 3.1E-15 1.1E-19 128.5 10.5 146 55-232 9-174 (180)
37 3tw8_B RAS-related protein RAB 99.6 2.2E-15 7.7E-20 129.1 9.4 144 55-231 8-170 (181)
38 2qu8_A Putative nucleolar GTP- 99.6 5.7E-15 2E-19 132.9 12.0 155 55-232 28-205 (228)
39 2lkc_A Translation initiation 99.6 3.8E-15 1.3E-19 127.6 10.1 145 54-232 6-171 (178)
40 3qq5_A Small GTP-binding prote 99.6 1.2E-15 4.1E-20 150.2 7.5 149 55-233 33-197 (423)
41 1upt_A ARL1, ADP-ribosylation 99.6 8.5E-15 2.9E-19 124.5 11.8 142 53-232 4-169 (171)
42 3oes_A GTPase rhebl1; small GT 99.6 9.3E-15 3.2E-19 128.6 11.8 144 55-232 23-187 (201)
43 3t5g_A GTP-binding protein RHE 99.6 1.3E-14 4.4E-19 125.0 12.4 144 56-233 6-170 (181)
44 2y8e_A RAB-protein 6, GH09086P 99.6 5.4E-15 1.8E-19 126.5 10.0 142 57-231 15-176 (179)
45 3tkl_A RAS-related protein RAB 99.6 7.8E-15 2.7E-19 127.8 11.1 145 55-232 15-179 (196)
46 1g16_A RAS-related protein SEC 99.6 6.3E-15 2.2E-19 125.0 10.2 143 56-232 3-165 (170)
47 1c1y_A RAS-related protein RAP 99.6 1.3E-14 4.5E-19 122.7 12.1 142 56-230 3-165 (167)
48 3q72_A GTP-binding protein RAD 99.6 3.5E-15 1.2E-19 126.4 8.3 141 56-231 2-163 (166)
49 4dsu_A GTPase KRAS, isoform 2B 99.6 1.2E-14 4.2E-19 125.5 11.9 141 56-231 4-165 (189)
50 1kao_A RAP2A; GTP-binding prot 99.6 1.3E-14 4.5E-19 122.3 11.7 142 56-231 3-165 (167)
51 2wjg_A FEOB, ferrous iron tran 99.6 3.7E-15 1.3E-19 129.1 8.2 149 56-234 7-171 (188)
52 3cph_A RAS-related protein SEC 99.6 6.8E-15 2.3E-19 130.0 10.0 145 53-231 17-181 (213)
53 1zj6_A ADP-ribosylation factor 99.6 1.3E-14 4.6E-19 125.9 11.4 143 55-235 15-181 (187)
54 1ek0_A Protein (GTP-binding pr 99.6 9.2E-15 3.2E-19 123.8 9.9 146 56-231 3-168 (170)
55 2fn4_A P23, RAS-related protei 99.6 1.5E-14 5.1E-19 124.0 11.2 143 56-232 9-172 (181)
56 4gzl_A RAS-related C3 botulinu 99.6 1.4E-14 4.8E-19 128.1 11.4 152 54-230 28-203 (204)
57 1z08_A RAS-related protein RAB 99.6 1.4E-14 4.8E-19 123.0 10.9 144 55-231 5-168 (170)
58 3clv_A RAB5 protein, putative; 99.6 1.9E-14 6.5E-19 125.4 12.0 158 55-231 6-203 (208)
59 1u8z_A RAS-related protein RAL 99.6 1.4E-14 4.7E-19 122.3 10.7 142 56-231 4-166 (168)
60 2q3h_A RAS homolog gene family 99.6 2.7E-14 9.4E-19 125.2 12.9 153 53-231 17-194 (201)
61 1x3s_A RAS-related protein RAB 99.6 1.9E-14 6.4E-19 125.1 11.6 148 56-237 15-183 (195)
62 1z2a_A RAS-related protein RAB 99.6 1E-14 3.6E-19 123.4 9.6 144 55-231 4-166 (168)
63 2hxs_A RAB-26, RAS-related pro 99.6 9.2E-15 3.1E-19 125.2 9.3 146 55-232 5-173 (178)
64 2bcg_Y Protein YP2, GTP-bindin 99.6 1.7E-14 5.8E-19 127.2 11.1 145 55-232 7-171 (206)
65 2j0v_A RAC-like GTP-binding pr 99.6 2.5E-14 8.6E-19 126.7 12.2 152 56-232 9-180 (212)
66 2nzj_A GTP-binding protein REM 99.5 1.2E-14 4E-19 124.1 9.5 144 56-231 4-168 (175)
67 2il1_A RAB12; G-protein, GDP, 99.5 5.2E-15 1.8E-19 129.5 7.4 145 55-231 25-189 (192)
68 1z0j_A RAB-22, RAS-related pro 99.5 1.3E-14 4.6E-19 122.9 9.7 143 55-231 5-168 (170)
69 1vg8_A RAS-related protein RAB 99.5 1.6E-14 5.5E-19 127.0 10.6 144 55-231 7-174 (207)
70 1z0f_A RAB14, member RAS oncog 99.5 2.1E-14 7.2E-19 122.8 11.0 144 55-231 14-177 (179)
71 1ky3_A GTP-binding protein YPT 99.5 1.2E-14 3.9E-19 124.7 9.3 147 55-231 7-177 (182)
72 1r2q_A RAS-related protein RAB 99.5 3E-14 1E-18 120.6 11.7 143 56-232 6-169 (170)
73 2efe_B Small GTP-binding prote 99.5 1.8E-14 6.3E-19 123.7 10.3 145 55-232 11-175 (181)
74 2ew1_A RAS-related protein RAB 99.5 1.5E-14 5.1E-19 128.1 9.7 144 55-231 25-188 (201)
75 3reg_A RHO-like small GTPase; 99.5 3.2E-14 1.1E-18 124.2 11.7 148 55-233 22-189 (194)
76 2bov_A RAla, RAS-related prote 99.5 2.5E-14 8.5E-19 125.6 11.0 143 55-231 13-176 (206)
77 1r8s_A ADP-ribosylation factor 99.5 2E-14 6.8E-19 121.5 9.9 137 57-231 1-161 (164)
78 1mh1_A RAC1; GTP-binding, GTPa 99.5 3.8E-14 1.3E-18 122.1 11.9 153 56-233 5-181 (186)
79 2a5j_A RAS-related protein RAB 99.5 1.5E-14 5E-19 126.2 9.3 143 55-230 20-182 (191)
80 2gf9_A RAS-related protein RAB 99.5 2.7E-14 9.1E-19 124.2 10.9 143 56-231 22-184 (189)
81 2fg5_A RAB-22B, RAS-related pr 99.5 1.9E-14 6.5E-19 125.7 10.0 145 55-233 22-187 (192)
82 1f6b_A SAR1; gtpases, N-termin 99.5 1.2E-14 4.1E-19 128.0 8.7 138 55-230 24-197 (198)
83 2bme_A RAB4A, RAS-related prot 99.5 1.6E-14 5.4E-19 124.8 9.3 143 56-231 10-172 (186)
84 2oil_A CATX-8, RAS-related pro 99.5 2.7E-14 9.1E-19 124.5 10.7 143 55-230 24-186 (193)
85 3q85_A GTP-binding protein REM 99.5 2E-14 6.8E-19 122.1 9.5 143 57-231 3-166 (169)
86 2h17_A ADP-ribosylation factor 99.5 1.2E-14 4.3E-19 125.6 8.3 137 55-229 20-180 (181)
87 2a9k_A RAS-related protein RAL 99.5 3.1E-14 1.1E-18 122.6 10.7 142 56-231 18-180 (187)
88 1jwy_B Dynamin A GTPase domain 99.5 7.8E-15 2.7E-19 138.3 7.5 172 55-237 23-267 (315)
89 1ksh_A ARF-like protein 2; sma 99.5 2.3E-14 8E-19 124.0 9.9 141 55-233 17-181 (186)
90 2h57_A ADP-ribosylation factor 99.5 4.3E-14 1.5E-18 123.0 11.6 141 55-231 20-186 (190)
91 1wms_A RAB-9, RAB9, RAS-relate 99.5 3.4E-14 1.2E-18 121.6 10.6 144 56-232 7-174 (177)
92 2e87_A Hypothetical protein PH 99.5 8.1E-14 2.8E-18 134.3 14.4 148 54-231 165-335 (357)
93 3cbq_A GTP-binding protein REM 99.5 2.4E-14 8.1E-19 125.9 9.4 147 54-232 21-188 (195)
94 1m2o_B GTP-binding protein SAR 99.5 1.7E-14 5.9E-19 126.1 8.5 143 55-229 22-189 (190)
95 1z06_A RAS-related protein RAB 99.5 1.9E-14 6.6E-19 125.1 8.3 145 55-231 19-187 (189)
96 4bas_A ADP-ribosylation factor 99.5 7.1E-14 2.4E-18 122.0 11.9 142 55-232 16-189 (199)
97 2p5s_A RAS and EF-hand domain 99.5 7.7E-14 2.6E-18 122.5 12.0 149 55-231 27-196 (199)
98 3r7w_A Gtpase1, GTP-binding pr 99.5 6.1E-14 2.1E-18 132.5 12.2 152 56-230 3-179 (307)
99 2fu5_C RAS-related protein RAB 99.5 6.9E-15 2.3E-19 126.9 5.2 144 55-231 7-170 (183)
100 2x77_A ADP-ribosylation factor 99.5 3.1E-14 1.1E-18 123.6 9.4 140 55-232 21-184 (189)
101 1moz_A ARL1, ADP-ribosylation 99.5 3.2E-14 1.1E-18 122.5 9.3 140 55-231 17-179 (183)
102 2atx_A Small GTP binding prote 99.5 8.3E-14 2.8E-18 121.4 12.1 149 56-230 18-191 (194)
103 2o52_A RAS-related protein RAB 99.5 1.6E-14 5.5E-19 127.2 7.4 144 55-231 24-187 (200)
104 3dz8_A RAS-related protein RAB 99.5 1.3E-14 4.6E-19 126.5 6.7 146 53-231 20-185 (191)
105 2b6h_A ADP-ribosylation factor 99.5 1.7E-14 5.7E-19 126.4 7.2 139 55-231 28-190 (192)
106 3bc1_A RAS-related protein RAB 99.5 5.1E-14 1.7E-18 121.9 10.2 152 56-231 11-184 (195)
107 3kkq_A RAS-related protein M-R 99.5 7.1E-14 2.4E-18 120.5 11.0 143 55-231 17-181 (183)
108 2hup_A RAS-related protein RAB 99.5 2.8E-14 9.7E-19 125.8 8.6 146 55-232 28-193 (201)
109 1zbd_A Rabphilin-3A; G protein 99.5 3.9E-14 1.3E-18 124.4 9.5 142 56-230 8-169 (203)
110 3q3j_B RHO-related GTP-binding 99.5 9E-14 3.1E-18 124.0 11.9 154 54-232 25-203 (214)
111 2erx_A GTP-binding protein DI- 99.5 5.4E-14 1.9E-18 119.2 10.0 143 56-232 3-167 (172)
112 1zd9_A ADP-ribosylation factor 99.5 3.3E-14 1.1E-18 123.8 8.8 141 55-232 21-185 (188)
113 2ce2_X GTPase HRAS; signaling 99.5 1.6E-13 5.5E-18 115.3 12.7 140 57-231 4-164 (166)
114 3t5d_A Septin-7; GTP-binding p 99.5 1.4E-13 4.7E-18 127.8 13.1 156 55-232 7-204 (274)
115 3bwd_D RAC-like GTP-binding pr 99.5 3.1E-14 1.1E-18 122.3 8.0 151 55-230 7-179 (182)
116 3lvq_E ARF-GAP with SH3 domain 99.5 4.3E-14 1.5E-18 141.9 10.3 141 56-233 322-485 (497)
117 2fv8_A H6, RHO-related GTP-bin 99.5 9.1E-14 3.1E-18 122.9 11.1 151 56-231 25-199 (207)
118 1fzq_A ADP-ribosylation factor 99.5 5.4E-14 1.9E-18 121.8 9.4 140 55-232 15-178 (181)
119 1m7b_A RND3/RHOE small GTP-bin 99.5 3.7E-13 1.3E-17 116.5 14.4 150 55-230 6-181 (184)
120 3l0i_B RAS-related protein RAB 99.5 3.5E-15 1.2E-19 131.2 1.1 144 55-231 32-195 (199)
121 3cpj_B GTP-binding protein YPT 99.5 5.4E-14 1.8E-18 126.0 9.0 145 55-232 12-176 (223)
122 2gco_A H9, RHO-related GTP-bin 99.5 2.4E-13 8.1E-18 119.7 12.8 149 56-230 25-198 (201)
123 2j1l_A RHO-related GTP-binding 99.5 1.1E-13 3.8E-18 123.2 10.7 153 55-232 33-209 (214)
124 2cjw_A GTP-binding protein GEM 99.5 1.2E-13 4E-18 121.2 10.6 145 56-231 6-171 (192)
125 2xex_A Elongation factor G; GT 99.5 4.6E-14 1.6E-18 147.2 8.9 212 56-346 10-259 (693)
126 2rdo_7 EF-G, elongation factor 99.5 2.5E-13 8.7E-18 141.8 14.3 220 55-346 9-267 (704)
127 2atv_A RERG, RAS-like estrogen 99.5 3.4E-13 1.2E-17 118.0 12.9 142 55-231 27-190 (196)
128 4dkx_A RAS-related protein RAB 99.5 1.5E-13 5.3E-18 123.3 10.9 144 56-232 13-176 (216)
129 3llu_A RAS-related GTP-binding 99.5 5.2E-13 1.8E-17 117.0 13.7 151 55-230 19-195 (196)
130 2f7s_A C25KG, RAS-related prot 99.5 3.8E-14 1.3E-18 126.0 6.4 154 55-231 24-198 (217)
131 3gj0_A GTP-binding nuclear pro 99.5 3.9E-14 1.3E-18 126.5 6.4 145 55-235 14-178 (221)
132 2iwr_A Centaurin gamma 1; ANK 99.5 2.4E-13 8.3E-18 116.6 11.2 139 56-231 7-168 (178)
133 3con_A GTPase NRAS; structural 99.5 3.1E-13 1.1E-17 117.3 11.8 142 56-232 21-183 (190)
134 1gwn_A RHO-related GTP-binding 99.5 6.2E-13 2.1E-17 117.9 13.8 151 55-230 27-202 (205)
135 3t1o_A Gliding protein MGLA; G 99.5 1.3E-13 4.5E-18 119.7 9.1 151 55-231 13-191 (198)
136 3c5c_A RAS-like protein 12; GD 99.5 4.2E-13 1.4E-17 116.8 12.1 142 55-231 20-185 (187)
137 1dar_A EF-G, elongation factor 99.5 1.2E-13 4.1E-18 144.0 9.9 212 56-346 12-261 (691)
138 2gf0_A GTP-binding protein DI- 99.5 4.1E-13 1.4E-17 117.1 11.9 142 55-232 7-171 (199)
139 2cxx_A Probable GTP-binding pr 99.5 2.7E-13 9.2E-18 117.2 10.6 143 57-232 2-184 (190)
140 4djt_A GTP-binding nuclear pro 99.5 5.1E-14 1.7E-18 125.2 6.1 146 54-234 9-177 (218)
141 3o47_A ADP-ribosylation factor 99.4 1.6E-13 5.4E-18 130.9 9.4 141 55-232 164-327 (329)
142 3def_A T7I23.11 protein; chlor 99.4 3.8E-13 1.3E-17 124.0 11.5 87 55-162 35-127 (262)
143 2g3y_A GTP-binding protein GEM 99.4 1.2E-13 4.2E-18 123.5 7.7 146 55-231 36-202 (211)
144 3j2k_7 ERF3, eukaryotic polype 99.4 1.7E-13 5.8E-18 135.7 9.4 99 55-177 16-168 (439)
145 2yc2_C IFT27, small RAB-relate 99.4 6.1E-14 2.1E-18 123.1 4.2 147 55-231 19-191 (208)
146 2fh5_B SR-beta, signal recogni 99.4 7.8E-13 2.7E-17 117.1 11.4 101 55-179 6-130 (214)
147 3ihw_A Centg3; RAS, centaurin, 99.4 7.1E-13 2.4E-17 115.2 10.6 140 55-231 19-179 (184)
148 2wkq_A NPH1-1, RAS-related C3 99.4 5.4E-13 1.8E-17 125.9 9.6 155 52-231 151-329 (332)
149 3th5_A RAS-related C3 botulinu 99.1 2.2E-14 7.6E-19 126.4 0.0 150 55-229 29-202 (204)
150 3izy_P Translation initiation 99.4 1.3E-14 4.5E-19 146.4 -1.7 148 55-231 3-167 (537)
151 3sjy_A Translation initiation 99.4 5.9E-13 2E-17 130.4 10.0 162 54-232 6-192 (403)
152 1h65_A Chloroplast outer envel 99.4 1.2E-12 4.3E-17 121.0 11.6 91 55-162 38-130 (270)
153 3izq_1 HBS1P, elongation facto 99.4 2.5E-13 8.4E-18 139.7 6.8 101 54-178 165-319 (611)
154 2c78_A Elongation factor TU-A; 99.4 7.8E-13 2.7E-17 129.5 9.9 149 55-232 10-212 (405)
155 3p26_A Elongation factor 1 alp 99.4 4.9E-13 1.7E-17 134.0 8.2 101 54-178 31-185 (483)
156 3zvr_A Dynamin-1; hydrolase, D 99.4 1.3E-13 4.4E-18 143.8 3.9 194 55-262 50-315 (772)
157 3tr5_A RF-3, peptide chain rel 99.4 8.7E-13 3E-17 133.3 9.2 99 56-178 13-148 (528)
158 1wb1_A Translation elongation 99.4 7.1E-13 2.4E-17 132.7 8.4 144 56-231 19-188 (482)
159 3ec1_A YQEH GTPase; atnos1, at 99.4 5.7E-13 1.9E-17 129.0 6.9 103 56-178 162-288 (369)
160 3mca_A HBS1, elongation factor 99.4 8E-14 2.7E-18 142.8 0.7 100 55-178 176-329 (592)
161 2aka_B Dynamin-1; fusion prote 99.3 2.8E-12 9.5E-17 119.6 10.7 163 55-228 25-249 (299)
162 2j69_A Bacterial dynamin-like 99.3 1.5E-12 5E-17 135.9 8.9 121 53-178 66-244 (695)
163 2www_A Methylmalonic aciduria 99.3 7.5E-13 2.6E-17 127.2 5.2 160 53-231 71-278 (349)
164 2elf_A Protein translation elo 99.3 4.5E-12 1.5E-16 122.7 10.6 133 58-231 23-179 (370)
165 1pui_A ENGB, probable GTP-bind 99.3 2E-12 6.9E-17 114.0 7.2 154 54-233 24-200 (210)
166 3dpu_A RAB family protein; roc 99.3 1.4E-12 4.8E-17 132.2 6.9 159 55-238 40-214 (535)
167 2f9l_A RAB11B, member RAS onco 99.3 7.2E-12 2.5E-16 109.9 10.4 143 56-231 5-167 (199)
168 1d2e_A Elongation factor TU (E 99.3 2.1E-12 7.3E-17 126.1 7.6 148 56-232 3-195 (397)
169 1kk1_A EIF2gamma; initiation o 99.3 3.4E-12 1.1E-16 125.2 9.0 165 55-232 9-200 (410)
170 2qpt_A EH domain-containing pr 99.3 7.2E-12 2.5E-16 127.3 11.2 122 55-179 64-233 (550)
171 2ywe_A GTP-binding protein LEP 99.3 4.7E-12 1.6E-16 129.4 9.7 146 56-232 6-184 (600)
172 3cb4_D GTP-binding protein LEP 99.3 6.2E-12 2.1E-16 128.7 10.6 145 57-232 5-182 (599)
173 2zej_A Dardarin, leucine-rich 99.3 9.7E-12 3.3E-16 107.7 9.4 150 56-232 2-178 (184)
174 1oix_A RAS-related protein RAB 99.3 1.7E-11 5.9E-16 107.0 10.9 142 56-230 29-190 (191)
175 2ged_A SR-beta, signal recogni 99.3 9.8E-12 3.3E-16 108.0 9.1 82 54-162 46-129 (193)
176 1s0u_A EIF-2-gamma, translatio 99.3 6.4E-12 2.2E-16 123.2 8.0 165 55-232 7-198 (408)
177 1zun_B Sulfate adenylate trans 99.2 8.9E-12 3E-16 123.1 8.2 112 55-178 23-171 (434)
178 3h2y_A GTPase family protein; 99.2 6.5E-12 2.2E-16 121.5 7.0 103 56-178 160-287 (368)
179 1puj_A YLQF, conserved hypothe 99.2 3.4E-12 1.2E-16 119.1 3.9 63 54-136 118-180 (282)
180 1nrj_B SR-beta, signal recogni 99.2 2.2E-11 7.4E-16 108.1 8.8 95 54-179 10-135 (218)
181 1g7s_A Translation initiation 99.2 1.4E-11 4.6E-16 126.2 8.1 113 55-178 4-136 (594)
182 2x2e_A Dynamin-1; nitration, h 99.2 2.4E-11 8.3E-16 116.8 9.3 162 55-228 30-254 (353)
183 3t34_A Dynamin-related protein 99.2 7.7E-11 2.7E-15 113.4 11.5 121 55-179 33-218 (360)
184 4fn5_A EF-G 1, elongation fact 99.2 3.2E-12 1.1E-16 133.7 1.7 218 57-346 14-270 (709)
185 3p32_A Probable GTPase RV1496/ 99.2 4.7E-11 1.6E-15 114.9 9.6 161 54-232 77-284 (355)
186 3avx_A Elongation factor TS, e 99.2 3.8E-11 1.3E-15 129.2 8.1 148 55-231 295-485 (1289)
187 2p67_A LAO/AO transport system 99.1 5.1E-11 1.7E-15 114.1 7.7 161 53-231 53-260 (341)
188 2h5e_A Peptide chain release f 99.1 9.4E-11 3.2E-15 118.5 9.9 99 56-178 13-148 (529)
189 1zo1_I IF2, translation initia 99.1 1.6E-11 5.4E-16 123.0 3.8 145 55-229 3-164 (501)
190 2dy1_A Elongation factor G; tr 99.1 1.7E-09 5.9E-14 112.2 17.8 47 301-347 208-254 (665)
191 1f60_A Elongation factor EEF1A 99.1 2.5E-11 8.5E-16 120.8 3.5 98 56-177 7-158 (458)
192 1jny_A EF-1-alpha, elongation 99.1 4.2E-11 1.5E-15 118.3 4.7 99 56-178 6-158 (435)
193 2qag_A Septin-2, protein NEDD5 99.1 3.2E-10 1.1E-14 109.3 9.3 30 53-82 34-63 (361)
194 3c5h_A Glucocorticoid receptor 99.0 8.8E-11 3E-15 107.6 4.5 70 151-231 162-254 (255)
195 1yrb_A ATP(GTP)binding protein 99.0 5.6E-10 1.9E-14 101.9 7.8 173 56-233 14-258 (262)
196 1n0u_A EF-2, elongation factor 99.0 4.5E-10 1.5E-14 119.5 7.7 112 56-177 19-163 (842)
197 1r5b_A Eukaryotic peptide chai 99.0 2.8E-10 9.6E-15 113.4 5.6 99 55-177 42-194 (467)
198 2wsm_A Hydrogenase expression/ 99.0 7.4E-10 2.5E-14 98.4 7.1 157 55-231 29-213 (221)
199 3cnl_A YLQF, putative uncharac 98.9 5.7E-10 2E-14 102.9 4.7 59 57-135 100-158 (262)
200 3vqt_A RF-3, peptide chain rel 98.9 2.7E-09 9.1E-14 108.3 9.6 97 57-177 32-165 (548)
201 2qm8_A GTPase/ATPase; G protei 98.9 6.4E-09 2.2E-13 99.3 11.1 162 53-231 52-260 (337)
202 1f5n_A Interferon-induced guan 98.9 3.4E-09 1.1E-13 108.0 9.0 68 55-134 37-104 (592)
203 3r7w_B Gtpase2, GTP-binding pr 98.8 8E-09 2.7E-13 97.9 9.3 100 58-179 1-121 (331)
204 2qnr_A Septin-2, protein NEDD5 98.8 2E-08 6.9E-13 94.3 11.7 165 55-235 17-217 (301)
205 3j25_A Tetracycline resistance 98.8 8.5E-10 2.9E-14 114.0 2.3 104 57-177 3-132 (638)
206 2hf9_A Probable hydrogenase ni 98.7 4.6E-08 1.6E-12 86.9 8.0 159 55-231 37-223 (226)
207 2qag_C Septin-7; cell cycle, c 98.5 1.7E-07 6E-12 91.8 9.4 28 54-81 29-56 (418)
208 3q5d_A Atlastin-1; G protein, 98.4 3.2E-07 1.1E-11 90.4 6.2 71 57-134 68-153 (447)
209 1tq4_A IIGP1, interferon-induc 98.4 9.1E-07 3.1E-11 86.5 9.2 156 55-238 68-259 (413)
210 2j37_W Signal recognition part 98.3 1.7E-07 5.9E-12 93.8 3.6 121 55-179 100-255 (504)
211 3sop_A Neuronal-specific septi 98.3 2.1E-06 7.1E-11 79.3 10.0 26 57-82 3-28 (270)
212 2qag_B Septin-6, protein NEDD5 98.3 1.3E-06 4.6E-11 85.5 8.6 24 57-80 43-66 (427)
213 1t9h_A YLOQ, probable GTPase E 97.8 6.8E-06 2.3E-10 77.2 2.9 33 56-88 173-205 (307)
214 2v3c_C SRP54, signal recogniti 97.8 2E-05 6.7E-10 77.5 6.3 23 56-78 99-121 (432)
215 2rcn_A Probable GTPase ENGC; Y 97.8 1.2E-05 4E-10 77.1 3.9 30 56-85 215-245 (358)
216 3dm5_A SRP54, signal recogniti 97.8 3.3E-05 1.1E-09 75.9 6.9 123 55-180 99-255 (443)
217 3szr_A Interferon-induced GTP- 97.7 7E-05 2.4E-09 76.8 9.1 23 57-79 46-68 (608)
218 2yv5_A YJEQ protein; hydrolase 97.6 9.1E-05 3.1E-09 69.2 6.4 33 56-89 165-197 (302)
219 1u0l_A Probable GTPase ENGC; p 97.5 7.1E-05 2.4E-09 69.9 4.4 30 56-85 169-198 (301)
220 3kl4_A SRP54, signal recogniti 97.3 0.00012 4.2E-09 71.7 4.1 23 55-77 96-118 (433)
221 3ney_A 55 kDa erythrocyte memb 97.3 0.00011 3.9E-09 64.3 3.4 43 56-98 19-62 (197)
222 1kgd_A CASK, peripheral plasma 97.2 0.00025 8.7E-09 60.7 4.2 42 56-97 5-47 (180)
223 1j8m_F SRP54, signal recogniti 97.0 0.00032 1.1E-08 65.4 3.7 23 56-78 98-120 (297)
224 1lvg_A Guanylate kinase, GMP k 96.9 0.00026 9E-09 61.7 1.9 24 56-79 4-27 (198)
225 2xxa_A Signal recognition part 96.9 0.00046 1.6E-08 67.7 3.8 23 55-77 99-121 (433)
226 1cip_A Protein (guanine nucleo 96.9 0.0018 6E-08 61.9 7.7 104 120-231 192-343 (353)
227 1ye8_A Protein THEP1, hypothet 96.9 0.00049 1.7E-08 59.1 3.1 24 57-80 1-24 (178)
228 3tau_A Guanylate kinase, GMP k 96.8 0.00071 2.4E-08 59.3 3.3 43 55-97 7-50 (208)
229 3a00_A Guanylate kinase, GMP k 96.7 0.00058 2E-08 58.7 2.4 40 58-97 3-43 (186)
230 1s96_A Guanylate kinase, GMP k 96.7 0.0011 3.7E-08 58.9 3.8 42 53-94 13-56 (219)
231 1ex7_A Guanylate kinase; subst 96.6 0.00072 2.5E-08 58.6 2.5 41 59-99 4-45 (186)
232 1kag_A SKI, shikimate kinase I 96.6 0.001 3.5E-08 55.9 2.9 25 54-78 2-26 (173)
233 2qor_A Guanylate kinase; phosp 96.6 0.00084 2.9E-08 58.5 2.4 44 53-96 9-53 (204)
234 1zcb_A G alpha I/13; GTP-bindi 96.5 0.004 1.4E-07 59.5 7.2 37 120-163 200-236 (362)
235 4ido_A Atlastin-1; GTPase, GTP 96.5 0.0041 1.4E-07 61.0 6.8 21 57-77 68-88 (457)
236 1zp6_A Hypothetical protein AT 96.4 0.0019 6.4E-08 55.2 3.6 24 55-78 8-31 (191)
237 3c8u_A Fructokinase; YP_612366 96.4 0.0018 6.3E-08 56.5 3.4 26 54-79 20-45 (208)
238 3tr0_A Guanylate kinase, GMP k 96.4 0.0019 6.4E-08 55.8 3.4 24 56-79 7-30 (205)
239 1znw_A Guanylate kinase, GMP k 96.4 0.0016 5.3E-08 56.9 2.8 27 54-80 18-44 (207)
240 3tif_A Uncharacterized ABC tra 96.3 0.0024 8.2E-08 57.3 4.0 37 55-103 30-66 (235)
241 2pcj_A ABC transporter, lipopr 96.3 0.0029 9.8E-08 56.3 4.2 25 55-79 29-53 (224)
242 3lnc_A Guanylate kinase, GMP k 96.2 0.0015 5.2E-08 57.9 2.0 26 55-80 26-52 (231)
243 2onk_A Molybdate/tungstate ABC 96.2 0.0034 1.2E-07 56.5 4.3 35 57-103 25-59 (240)
244 1cke_A CK, MSSA, protein (cyti 96.2 0.0026 8.9E-08 55.8 3.4 24 55-78 4-27 (227)
245 1b0u_A Histidine permease; ABC 96.1 0.0036 1.2E-07 57.1 4.1 37 55-103 31-67 (262)
246 1z6g_A Guanylate kinase; struc 96.1 0.0024 8.2E-08 56.4 2.8 25 55-79 22-46 (218)
247 1zu4_A FTSY; GTPase, signal re 96.1 0.004 1.4E-07 58.5 4.5 24 55-78 104-127 (320)
248 2cbz_A Multidrug resistance-as 96.1 0.0043 1.5E-07 55.7 4.3 36 55-102 30-65 (237)
249 1g6h_A High-affinity branched- 96.1 0.0038 1.3E-07 56.7 4.0 25 55-79 32-56 (257)
250 3asz_A Uridine kinase; cytidin 96.1 0.0032 1.1E-07 54.7 3.4 25 55-79 5-29 (211)
251 3gfo_A Cobalt import ATP-bindi 96.1 0.0038 1.3E-07 57.4 4.1 37 55-103 33-69 (275)
252 2ff7_A Alpha-hemolysin translo 96.1 0.0044 1.5E-07 56.0 4.3 25 55-79 34-58 (247)
253 1sgw_A Putative ABC transporte 96.1 0.0043 1.5E-07 54.9 4.1 24 56-79 35-58 (214)
254 1ji0_A ABC transporter; ATP bi 96.0 0.0042 1.4E-07 55.8 4.0 25 55-79 31-55 (240)
255 2olj_A Amino acid ABC transpor 96.0 0.0044 1.5E-07 56.6 4.1 36 55-102 49-84 (263)
256 2pze_A Cystic fibrosis transme 96.0 0.0049 1.7E-07 55.0 4.3 25 55-79 33-57 (229)
257 1vpl_A ABC transporter, ATP-bi 96.0 0.0047 1.6E-07 56.1 4.1 25 55-79 40-64 (256)
258 2j41_A Guanylate kinase; GMP, 96.0 0.004 1.4E-07 53.6 3.4 25 55-79 5-29 (207)
259 2bdt_A BH3686; alpha-beta prot 96.0 0.0033 1.1E-07 53.7 2.8 22 57-78 3-24 (189)
260 1ly1_A Polynucleotide kinase; 95.9 0.004 1.4E-07 52.3 3.3 23 55-77 1-23 (181)
261 2bbw_A Adenylate kinase 4, AK4 95.9 0.0039 1.3E-07 55.8 3.2 22 56-77 27-48 (246)
262 3b85_A Phosphate starvation-in 95.9 0.0038 1.3E-07 54.9 3.0 25 55-79 21-45 (208)
263 2ihy_A ABC transporter, ATP-bi 95.9 0.0057 1.9E-07 56.3 4.3 25 55-79 46-70 (279)
264 2yz2_A Putative ABC transporte 95.9 0.0053 1.8E-07 56.0 4.0 37 55-103 32-68 (266)
265 2ixe_A Antigen peptide transpo 95.9 0.006 2E-07 55.9 4.3 25 55-79 44-68 (271)
266 4gp7_A Metallophosphoesterase; 95.9 0.0036 1.2E-07 52.9 2.6 23 55-77 8-30 (171)
267 2qi9_C Vitamin B12 import ATP- 95.9 0.0057 1.9E-07 55.4 4.0 25 55-79 25-49 (249)
268 1jjv_A Dephospho-COA kinase; P 95.8 0.0046 1.6E-07 53.5 3.3 22 57-78 3-24 (206)
269 4g1u_C Hemin import ATP-bindin 95.8 0.0034 1.2E-07 57.4 2.5 25 55-79 36-60 (266)
270 3nh6_A ATP-binding cassette SU 95.8 0.0041 1.4E-07 58.1 3.0 37 55-103 79-115 (306)
271 1mv5_A LMRA, multidrug resista 95.8 0.0039 1.3E-07 56.1 2.8 25 55-79 27-51 (243)
272 4eun_A Thermoresistant glucoki 95.8 0.0049 1.7E-07 53.3 3.3 23 56-78 29-51 (200)
273 2d2e_A SUFC protein; ABC-ATPas 95.8 0.004 1.4E-07 56.3 2.8 39 55-103 28-66 (250)
274 1htw_A HI0065; nucleotide-bind 95.8 0.0066 2.3E-07 51.0 3.9 26 55-80 32-57 (158)
275 1np6_A Molybdopterin-guanine d 95.8 0.0052 1.8E-07 52.5 3.3 24 55-78 5-28 (174)
276 2xtz_A Guanine nucleotide-bind 95.8 0.012 4E-07 56.2 6.0 36 120-162 182-217 (354)
277 2v9p_A Replication protein E1; 95.8 0.0054 1.9E-07 57.2 3.5 26 54-79 124-149 (305)
278 2f1r_A Molybdopterin-guanine d 95.8 0.0026 8.8E-08 54.3 1.2 22 57-78 3-24 (171)
279 2zu0_C Probable ATP-dependent 95.7 0.0046 1.6E-07 56.5 2.8 24 55-78 45-68 (267)
280 2if2_A Dephospho-COA kinase; a 95.7 0.0058 2E-07 52.8 3.2 22 57-78 2-23 (204)
281 2i3b_A HCR-ntpase, human cance 95.7 0.0046 1.6E-07 53.5 2.5 23 58-80 3-25 (189)
282 2ghi_A Transport protein; mult 95.7 0.005 1.7E-07 56.1 2.8 24 55-78 45-68 (260)
283 3cm0_A Adenylate kinase; ATP-b 95.7 0.0051 1.7E-07 52.2 2.7 23 55-77 3-25 (186)
284 3tui_C Methionine import ATP-b 95.6 0.0078 2.7E-07 57.6 4.3 37 55-103 53-89 (366)
285 3uie_A Adenylyl-sulfate kinase 95.6 0.0064 2.2E-07 52.6 3.4 25 54-78 23-47 (200)
286 3ohm_A Guanine nucleotide-bind 95.6 0.013 4.6E-07 55.1 5.7 36 120-162 166-201 (327)
287 2nq2_C Hypothetical ABC transp 95.6 0.0049 1.7E-07 55.9 2.6 25 55-79 30-54 (253)
288 2rhm_A Putative kinase; P-loop 95.6 0.0072 2.5E-07 51.4 3.6 24 54-77 3-26 (193)
289 1knq_A Gluconate kinase; ALFA/ 95.6 0.0068 2.3E-07 50.9 3.2 23 56-78 8-30 (175)
290 3lw7_A Adenylate kinase relate 95.5 0.0063 2.2E-07 50.5 2.9 20 57-76 2-21 (179)
291 2pjz_A Hypothetical protein ST 95.5 0.0097 3.3E-07 54.3 4.3 23 56-78 30-52 (263)
292 2eyu_A Twitching motility prot 95.5 0.006 2.1E-07 55.6 2.9 26 54-79 23-48 (261)
293 2qt1_A Nicotinamide riboside k 95.5 0.0083 2.8E-07 52.0 3.6 24 55-78 20-43 (207)
294 3t61_A Gluconokinase; PSI-biol 95.5 0.0064 2.2E-07 52.5 2.9 24 55-78 17-40 (202)
295 3aez_A Pantothenate kinase; tr 95.5 0.0073 2.5E-07 56.5 3.4 27 53-79 87-113 (312)
296 1azs_C GS-alpha; complex (lyas 95.5 0.028 9.7E-07 54.4 7.6 37 120-163 216-252 (402)
297 2bbs_A Cystic fibrosis transme 95.5 0.01 3.6E-07 54.9 4.4 24 55-78 63-86 (290)
298 4a74_A DNA repair and recombin 95.4 0.0072 2.5E-07 52.8 2.9 25 55-79 24-48 (231)
299 1qhx_A CPT, protein (chloramph 95.4 0.0085 2.9E-07 50.3 3.3 22 56-77 3-24 (178)
300 2v54_A DTMP kinase, thymidylat 95.4 0.0089 3E-07 51.4 3.5 23 55-77 3-25 (204)
301 2jeo_A Uridine-cytidine kinase 95.4 0.0087 3E-07 53.5 3.3 24 55-78 24-47 (245)
302 3kb2_A SPBC2 prophage-derived 95.3 0.0087 3E-07 49.8 3.0 21 57-77 2-22 (173)
303 2jaq_A Deoxyguanosine kinase; 95.3 0.0086 2.9E-07 51.3 3.0 21 57-77 1-21 (205)
304 2iyv_A Shikimate kinase, SK; t 95.3 0.0076 2.6E-07 51.1 2.6 23 55-77 1-23 (184)
305 1via_A Shikimate kinase; struc 95.3 0.0076 2.6E-07 50.7 2.6 21 57-77 5-25 (175)
306 3fb4_A Adenylate kinase; psych 95.3 0.0087 3E-07 52.1 3.0 21 57-77 1-21 (216)
307 2ffh_A Protein (FFH); SRP54, s 95.3 0.012 4.1E-07 57.5 4.3 23 56-78 98-120 (425)
308 3fvq_A Fe(3+) IONS import ATP- 95.3 0.013 4.4E-07 55.9 4.4 36 56-103 30-65 (359)
309 3vaa_A Shikimate kinase, SK; s 95.2 0.01 3.5E-07 51.2 3.3 24 55-78 24-47 (199)
310 2yvu_A Probable adenylyl-sulfa 95.2 0.011 3.8E-07 50.2 3.5 24 55-78 12-35 (186)
311 3dl0_A Adenylate kinase; phosp 95.2 0.0096 3.3E-07 51.9 3.0 21 57-77 1-21 (216)
312 2wwf_A Thymidilate kinase, put 95.2 0.012 4E-07 50.9 3.6 23 55-77 9-31 (212)
313 2ehv_A Hypothetical protein PH 95.2 0.0088 3E-07 53.0 2.8 23 55-77 29-51 (251)
314 1lw7_A Transcriptional regulat 95.1 0.0078 2.7E-07 57.3 2.4 24 56-79 170-193 (365)
315 1z47_A CYSA, putative ABC-tran 95.1 0.015 5E-07 55.5 4.3 36 56-103 41-76 (355)
316 1kht_A Adenylate kinase; phosp 95.1 0.011 3.9E-07 50.0 3.2 22 56-77 3-24 (192)
317 2yyz_A Sugar ABC transporter, 95.1 0.015 5.1E-07 55.5 4.3 36 56-103 29-64 (359)
318 1nn5_A Similar to deoxythymidy 95.1 0.013 4.4E-07 50.7 3.5 23 55-77 8-30 (215)
319 1rz3_A Hypothetical protein rb 95.1 0.013 4.6E-07 50.7 3.6 25 54-78 20-44 (201)
320 1vht_A Dephospho-COA kinase; s 95.1 0.012 4.2E-07 51.3 3.3 23 55-77 3-25 (218)
321 2c95_A Adenylate kinase 1; tra 95.1 0.013 4.4E-07 49.9 3.3 23 55-77 8-30 (196)
322 1sq5_A Pantothenate kinase; P- 95.0 0.013 4.4E-07 54.6 3.5 26 54-79 78-103 (308)
323 1g29_1 MALK, maltose transport 95.0 0.016 5.4E-07 55.6 4.3 36 56-103 29-64 (372)
324 4e22_A Cytidylate kinase; P-lo 95.0 0.013 4.4E-07 52.9 3.4 23 55-77 26-48 (252)
325 2pt7_A CAG-ALFA; ATPase, prote 95.0 0.01 3.5E-07 55.9 2.8 24 56-79 171-194 (330)
326 3rlf_A Maltose/maltodextrin im 95.0 0.017 5.7E-07 55.6 4.3 36 56-103 29-64 (381)
327 2it1_A 362AA long hypothetical 95.0 0.017 5.7E-07 55.2 4.3 36 56-103 29-64 (362)
328 2cdn_A Adenylate kinase; phosp 95.0 0.015 5E-07 50.1 3.5 24 54-77 18-41 (201)
329 1nks_A Adenylate kinase; therm 95.0 0.013 4.6E-07 49.5 3.3 21 57-77 2-22 (194)
330 2bwj_A Adenylate kinase 5; pho 95.0 0.01 3.4E-07 50.8 2.4 23 55-77 11-33 (199)
331 4fid_A G protein alpha subunit 95.0 0.054 1.8E-06 51.2 7.7 36 120-162 160-195 (340)
332 2pt5_A Shikimate kinase, SK; a 95.0 0.013 4.3E-07 48.8 3.0 21 57-77 1-21 (168)
333 1y63_A LMAJ004144AAA protein; 95.0 0.015 5.1E-07 49.5 3.5 23 55-77 9-31 (184)
334 1v43_A Sugar-binding transport 95.0 0.018 6E-07 55.3 4.3 37 55-103 36-72 (372)
335 1tev_A UMP-CMP kinase; ploop, 94.9 0.014 4.7E-07 49.5 3.1 22 56-77 3-24 (196)
336 1qf9_A UMP/CMP kinase, protein 94.9 0.016 5.3E-07 49.1 3.5 23 55-77 5-27 (194)
337 1aky_A Adenylate kinase; ATP:A 94.9 0.014 4.9E-07 51.0 3.3 23 55-77 3-25 (220)
338 2plr_A DTMP kinase, probable t 94.9 0.014 4.9E-07 50.2 3.3 22 56-77 4-25 (213)
339 1e6c_A Shikimate kinase; phosp 94.9 0.013 4.4E-07 48.9 2.8 22 56-77 2-23 (173)
340 3ec2_A DNA replication protein 94.9 0.015 5.2E-07 49.1 3.3 25 55-79 37-61 (180)
341 2kjq_A DNAA-related protein; s 94.9 0.012 4.2E-07 48.7 2.6 25 55-79 35-59 (149)
342 2gza_A Type IV secretion syste 94.9 0.012 4.1E-07 56.1 2.9 24 55-78 174-197 (361)
343 1zd8_A GTP:AMP phosphotransfer 94.9 0.015 5.1E-07 51.2 3.3 23 55-77 6-28 (227)
344 3tlx_A Adenylate kinase 2; str 94.9 0.015 5.3E-07 52.0 3.5 25 53-77 26-50 (243)
345 3a4m_A L-seryl-tRNA(SEC) kinas 94.9 0.014 4.8E-07 52.8 3.3 23 55-77 3-25 (260)
346 1uf9_A TT1252 protein; P-loop, 94.9 0.016 5.6E-07 49.6 3.5 23 55-77 7-29 (203)
347 1e4v_A Adenylate kinase; trans 94.8 0.015 5.1E-07 50.7 3.2 21 57-77 1-21 (214)
348 3trf_A Shikimate kinase, SK; a 94.8 0.016 5.4E-07 49.1 3.2 22 56-77 5-26 (185)
349 1m7g_A Adenylylsulfate kinase; 94.8 0.018 6.1E-07 50.1 3.6 27 51-77 20-46 (211)
350 3d31_A Sulfate/molybdate ABC t 94.7 0.014 4.8E-07 55.4 3.0 37 55-103 25-61 (348)
351 3jvv_A Twitching mobility prot 94.7 0.013 4.5E-07 55.8 2.8 23 57-79 124-146 (356)
352 3tqc_A Pantothenate kinase; bi 94.7 0.018 6E-07 54.2 3.4 25 54-78 90-114 (321)
353 1zak_A Adenylate kinase; ATP:A 94.6 0.017 5.7E-07 50.6 3.1 23 55-77 4-26 (222)
354 2pbr_A DTMP kinase, thymidylat 94.6 0.018 6.1E-07 48.8 3.0 21 57-77 1-21 (195)
355 2pez_A Bifunctional 3'-phospho 94.6 0.02 6.7E-07 48.3 3.3 24 55-78 4-27 (179)
356 1oxx_K GLCV, glucose, ABC tran 94.6 0.013 4.4E-07 55.8 2.3 37 55-103 30-66 (353)
357 1rj9_A FTSY, signal recognitio 94.5 0.02 6.8E-07 53.3 3.4 25 55-79 101-125 (304)
358 1odf_A YGR205W, hypothetical 3 94.5 0.02 7E-07 52.9 3.4 25 54-78 29-53 (290)
359 3b60_A Lipid A export ATP-bind 94.5 0.028 9.6E-07 57.0 4.7 37 55-103 368-404 (582)
360 2ewv_A Twitching motility prot 94.5 0.018 6E-07 55.2 3.0 24 55-78 135-158 (372)
361 2yl4_A ATP-binding cassette SU 94.5 0.027 9.4E-07 57.2 4.6 37 55-103 369-405 (595)
362 3iij_A Coilin-interacting nucl 94.4 0.021 7E-07 48.2 3.0 22 56-77 11-32 (180)
363 1gtv_A TMK, thymidylate kinase 94.4 0.011 3.8E-07 51.2 1.3 20 58-77 2-21 (214)
364 2vli_A Antibiotic resistance p 94.4 0.018 6.1E-07 48.5 2.6 22 56-77 5-26 (183)
365 3be4_A Adenylate kinase; malar 94.4 0.022 7.7E-07 49.8 3.3 22 56-77 5-26 (217)
366 3gd7_A Fusion complex of cysti 94.4 0.018 6.3E-07 55.5 2.9 24 55-78 46-69 (390)
367 1xjc_A MOBB protein homolog; s 94.3 0.024 8.2E-07 48.1 3.2 23 56-78 4-26 (169)
368 2oap_1 GSPE-2, type II secreti 94.3 0.019 6.6E-07 57.4 3.0 24 55-78 259-282 (511)
369 1u0l_A Probable GTPase ENGC; p 94.3 0.041 1.4E-06 50.9 5.1 87 122-227 64-168 (301)
370 3qf4_B Uncharacterized ABC tra 94.3 0.033 1.1E-06 56.7 4.7 37 55-103 380-416 (598)
371 2x8a_A Nuclear valosin-contain 94.3 0.019 6.5E-07 52.5 2.7 22 58-79 46-67 (274)
372 2vp4_A Deoxynucleoside kinase; 94.3 0.019 6.5E-07 50.8 2.6 25 55-79 19-43 (230)
373 3b9q_A Chloroplast SRP recepto 94.3 0.024 8.2E-07 52.7 3.4 25 55-79 99-123 (302)
374 1nij_A Hypothetical protein YJ 94.3 0.021 7E-07 53.4 2.9 23 57-79 5-27 (318)
375 2z0h_A DTMP kinase, thymidylat 94.2 0.024 8.1E-07 48.2 3.0 21 57-77 1-21 (197)
376 1ukz_A Uridylate kinase; trans 94.2 0.026 9E-07 48.5 3.3 22 56-77 15-36 (203)
377 3e70_C DPA, signal recognition 94.2 0.026 8.8E-07 53.2 3.4 25 55-79 128-152 (328)
378 2npi_A Protein CLP1; CLP1-PCF1 94.2 0.023 8E-07 56.0 3.2 26 55-80 137-162 (460)
379 1p9r_A General secretion pathw 94.2 0.021 7.2E-07 55.6 2.8 24 56-79 167-190 (418)
380 2xb4_A Adenylate kinase; ATP-b 94.1 0.025 8.5E-07 49.8 3.0 21 57-77 1-21 (223)
381 3b5x_A Lipid A export ATP-bind 94.1 0.031 1.1E-06 56.6 4.1 24 55-78 368-391 (582)
382 1yqt_A RNAse L inhibitor; ATP- 94.1 0.023 7.8E-07 57.2 3.0 27 54-80 45-71 (538)
383 4eaq_A DTMP kinase, thymidylat 94.1 0.03 1E-06 49.7 3.5 25 54-78 24-48 (229)
384 2obl_A ESCN; ATPase, hydrolase 94.1 0.026 9E-07 53.5 3.2 26 55-80 70-95 (347)
385 3qf4_A ABC transporter, ATP-bi 94.0 0.036 1.2E-06 56.3 4.4 37 55-103 368-404 (587)
386 1cr0_A DNA primase/helicase; R 94.0 0.025 8.7E-07 51.8 2.9 25 55-79 34-58 (296)
387 3r20_A Cytidylate kinase; stru 94.0 0.029 9.9E-07 50.2 3.2 24 54-77 7-30 (233)
388 2p5t_B PEZT; postsegregational 94.0 0.023 7.8E-07 51.1 2.5 25 54-78 30-54 (253)
389 3nwj_A ATSK2; P loop, shikimat 94.0 0.025 8.7E-07 51.1 2.8 23 56-78 48-70 (250)
390 4f4c_A Multidrug resistance pr 94.0 0.025 8.5E-07 62.9 3.3 37 55-103 1104-1140(1321)
391 1ixz_A ATP-dependent metallopr 94.0 0.026 8.8E-07 50.5 2.8 22 58-79 51-72 (254)
392 2w0m_A SSO2452; RECA, SSPF, un 94.0 0.026 9E-07 49.0 2.8 24 56-79 23-46 (235)
393 3kta_A Chromosome segregation 93.9 0.029 9.8E-07 47.3 2.9 21 58-78 28-48 (182)
394 4a82_A Cystic fibrosis transme 93.9 0.028 9.7E-07 56.9 3.3 37 55-103 366-402 (578)
395 3ozx_A RNAse L inhibitor; ATP 93.9 0.023 7.9E-07 57.1 2.6 24 57-80 26-49 (538)
396 1ak2_A Adenylate kinase isoenz 93.8 0.035 1.2E-06 49.1 3.4 23 55-77 15-37 (233)
397 3ake_A Cytidylate kinase; CMP 93.8 0.035 1.2E-06 47.6 3.3 22 57-78 3-24 (208)
398 3sr0_A Adenylate kinase; phosp 93.8 0.033 1.1E-06 48.7 3.0 21 57-77 1-21 (206)
399 3j16_B RLI1P; ribosome recycli 93.8 0.035 1.2E-06 56.7 3.6 27 55-81 102-128 (608)
400 3euj_A Chromosome partition pr 93.7 0.028 9.6E-07 55.7 2.8 24 57-80 30-53 (483)
401 1uj2_A Uridine-cytidine kinase 93.7 0.035 1.2E-06 49.8 3.3 23 55-77 21-43 (252)
402 1gvn_B Zeta; postsegregational 93.7 0.036 1.2E-06 51.0 3.4 23 55-77 32-54 (287)
403 1ltq_A Polynucleotide kinase; 93.7 0.035 1.2E-06 50.8 3.3 23 56-78 2-24 (301)
404 3bk7_A ABC transporter ATP-bin 93.5 0.032 1.1E-06 57.0 2.8 27 54-80 115-141 (607)
405 2og2_A Putative signal recogni 93.5 0.04 1.4E-06 52.5 3.4 25 55-79 156-180 (359)
406 1iy2_A ATP-dependent metallopr 93.5 0.035 1.2E-06 50.4 2.8 22 58-79 75-96 (278)
407 1in4_A RUVB, holliday junction 93.4 0.035 1.2E-06 52.0 2.8 23 57-79 52-74 (334)
408 2yhs_A FTSY, cell division pro 93.4 0.043 1.5E-06 54.5 3.4 24 56-79 293-316 (503)
409 3qf7_A RAD50; ABC-ATPase, ATPa 93.4 0.035 1.2E-06 52.9 2.8 20 58-77 25-44 (365)
410 2dpy_A FLII, flagellum-specifi 93.3 0.041 1.4E-06 53.8 3.1 25 55-79 156-180 (438)
411 2f6r_A COA synthase, bifunctio 93.3 0.049 1.7E-06 49.8 3.5 23 55-77 74-96 (281)
412 1puj_A YLQF, conserved hypothe 93.3 0.1 3.5E-06 47.8 5.6 77 142-231 14-105 (282)
413 1q3t_A Cytidylate kinase; nucl 93.2 0.053 1.8E-06 48.0 3.4 24 55-78 15-38 (236)
414 2cvh_A DNA repair and recombin 93.2 0.043 1.5E-06 47.4 2.8 24 55-78 19-42 (220)
415 1yqt_A RNAse L inhibitor; ATP- 93.1 0.056 1.9E-06 54.3 3.9 26 55-80 311-336 (538)
416 1svm_A Large T antigen; AAA+ f 93.1 0.052 1.8E-06 52.0 3.5 26 53-78 166-191 (377)
417 1zuh_A Shikimate kinase; alpha 93.1 0.049 1.7E-06 45.2 2.9 21 57-77 8-28 (168)
418 1n0w_A DNA repair protein RAD5 93.1 0.045 1.5E-06 48.1 2.8 25 55-79 23-47 (243)
419 3ozx_A RNAse L inhibitor; ATP 93.0 0.04 1.4E-06 55.4 2.6 25 55-79 293-317 (538)
420 2ze6_A Isopentenyl transferase 93.0 0.047 1.6E-06 49.2 2.8 21 58-78 3-23 (253)
421 1f2t_A RAD50 ABC-ATPase; DNA d 92.9 0.048 1.6E-06 45.0 2.5 20 58-77 25-44 (149)
422 3gmt_A Adenylate kinase; ssgci 92.8 0.056 1.9E-06 48.2 3.0 22 56-77 8-29 (230)
423 2grj_A Dephospho-COA kinase; T 92.8 0.058 2E-06 46.6 3.0 22 56-77 12-33 (192)
424 3bk7_A ABC transporter ATP-bin 92.7 0.071 2.4E-06 54.4 3.9 25 55-79 381-405 (607)
425 3cr8_A Sulfate adenylyltranfer 92.6 0.046 1.6E-06 55.1 2.5 27 53-79 366-392 (552)
426 1bif_A 6-phosphofructo-2-kinas 92.6 0.062 2.1E-06 52.9 3.3 24 54-77 37-60 (469)
427 3j16_B RLI1P; ribosome recycli 92.5 0.054 1.9E-06 55.2 2.8 23 58-80 380-402 (608)
428 3ec1_A YQEH GTPase; atnos1, at 92.5 0.18 6.2E-06 48.0 6.3 84 144-232 63-162 (369)
429 4f4c_A Multidrug resistance pr 92.3 0.099 3.4E-06 58.1 4.8 25 55-79 443-467 (1321)
430 3b9p_A CG5977-PA, isoform A; A 92.0 0.36 1.2E-05 43.8 7.6 24 55-78 53-76 (297)
431 4dzz_A Plasmid partitioning pr 92.0 0.18 6E-06 43.0 5.2 32 121-161 76-107 (206)
432 1nlf_A Regulatory protein REPA 92.0 0.076 2.6E-06 48.2 2.9 24 55-78 29-52 (279)
433 2px0_A Flagellar biosynthesis 92.0 0.094 3.2E-06 48.5 3.5 24 55-78 104-127 (296)
434 1jbk_A CLPB protein; beta barr 92.0 0.097 3.3E-06 43.4 3.4 23 56-78 43-65 (195)
435 3h4m_A Proteasome-activating n 91.9 0.3 1E-05 44.0 6.9 24 55-78 50-73 (285)
436 3g5u_A MCG1178, multidrug resi 91.9 0.1 3.6E-06 57.8 4.3 25 55-79 415-439 (1284)
437 1qhl_A Protein (cell division 91.8 0.014 4.8E-07 52.0 -2.3 22 58-79 29-50 (227)
438 4edh_A DTMP kinase, thymidylat 91.8 0.095 3.2E-06 46.0 3.1 22 56-77 6-27 (213)
439 3v9p_A DTMP kinase, thymidylat 91.8 0.069 2.4E-06 47.5 2.2 23 55-77 24-46 (227)
440 3umf_A Adenylate kinase; rossm 91.8 0.11 3.7E-06 45.9 3.5 23 55-77 28-50 (217)
441 4b4t_L 26S protease subunit RP 91.7 0.3 1E-05 47.6 7.0 26 53-78 212-237 (437)
442 3g5u_A MCG1178, multidrug resi 91.6 0.11 3.7E-06 57.7 4.1 36 56-103 1059-1094(1284)
443 1lv7_A FTSH; alpha/beta domain 91.6 0.11 3.7E-06 46.4 3.4 24 56-79 45-68 (257)
444 1p5z_B DCK, deoxycytidine kina 91.5 0.065 2.2E-06 48.2 1.8 24 54-77 22-45 (263)
445 2iw3_A Elongation factor 3A; a 91.5 0.093 3.2E-06 56.3 3.2 26 55-80 460-485 (986)
446 3pxg_A Negative regulator of g 91.3 0.22 7.7E-06 48.9 5.7 23 56-78 201-223 (468)
447 3syl_A Protein CBBX; photosynt 91.2 0.42 1.4E-05 43.5 7.1 23 55-77 66-88 (309)
448 2dhr_A FTSH; AAA+ protein, hex 91.2 0.065 2.2E-06 53.3 1.7 23 57-79 65-87 (499)
449 2iw3_A Elongation factor 3A; a 91.2 0.053 1.8E-06 58.1 1.1 25 55-79 698-722 (986)
450 1vma_A Cell division protein F 91.1 0.13 4.4E-06 47.8 3.4 24 55-78 103-126 (306)
451 2ocp_A DGK, deoxyguanosine kin 91.1 0.13 4.5E-06 45.5 3.4 22 56-77 2-23 (241)
452 3d3q_A TRNA delta(2)-isopenten 90.9 0.13 4.3E-06 48.6 3.3 23 56-78 7-29 (340)
453 2h92_A Cytidylate kinase; ross 90.9 0.11 3.9E-06 44.9 2.8 22 56-77 3-24 (219)
454 4aby_A DNA repair protein RECN 90.9 0.051 1.7E-06 52.3 0.5 23 55-78 60-82 (415)
455 1xwi_A SKD1 protein; VPS4B, AA 90.9 0.67 2.3E-05 43.0 8.2 25 55-79 44-68 (322)
456 3lv8_A DTMP kinase, thymidylat 90.7 0.13 4.5E-06 45.9 3.0 22 56-77 27-48 (236)
457 3crm_A TRNA delta(2)-isopenten 90.7 0.14 4.9E-06 47.9 3.3 24 55-78 4-27 (323)
458 1zcb_A G alpha I/13; GTP-bindi 90.6 0.14 4.6E-06 48.8 3.2 24 54-77 31-54 (362)
459 4b4t_M 26S protease regulatory 90.6 0.36 1.2E-05 47.1 6.2 27 53-79 212-238 (434)
460 3qks_A DNA double-strand break 90.5 0.13 4.4E-06 44.6 2.8 20 58-77 25-44 (203)
461 2w58_A DNAI, primosome compone 90.5 0.15 5.2E-06 43.5 3.2 22 57-78 55-76 (202)
462 4b4t_K 26S protease regulatory 90.5 0.42 1.4E-05 46.5 6.6 25 54-78 204-228 (428)
463 3bos_A Putative DNA replicatio 90.5 0.16 5.4E-06 44.1 3.3 24 55-78 51-74 (242)
464 1pzn_A RAD51, DNA repair and r 90.5 0.13 4.5E-06 48.6 2.9 25 55-79 130-154 (349)
465 2dr3_A UPF0273 protein PH0284; 90.4 0.14 4.7E-06 44.9 2.9 23 55-77 22-44 (247)
466 1a7j_A Phosphoribulokinase; tr 90.3 0.12 4.1E-06 47.5 2.5 23 56-78 5-27 (290)
467 3zvl_A Bifunctional polynucleo 90.2 0.15 5.2E-06 49.3 3.2 23 55-77 257-279 (416)
468 2p65_A Hypothetical protein PF 90.2 0.14 4.7E-06 42.5 2.5 24 55-78 42-65 (187)
469 3ld9_A DTMP kinase, thymidylat 90.2 0.12 4E-06 45.8 2.2 23 55-77 20-42 (223)
470 3ux8_A Excinuclease ABC, A sub 90.1 0.085 2.9E-06 54.4 1.4 22 56-77 348-369 (670)
471 4tmk_A Protein (thymidylate ki 89.9 0.17 5.8E-06 44.4 3.0 22 56-77 3-24 (213)
472 1tue_A Replication protein E1; 89.8 0.12 4.1E-06 45.3 1.9 20 58-77 60-79 (212)
473 1tf7_A KAIC; homohexamer, hexa 89.7 0.16 5.4E-06 50.8 2.9 22 55-76 38-59 (525)
474 4b4t_J 26S protease regulatory 89.5 0.47 1.6E-05 45.7 6.0 27 53-79 179-205 (405)
475 2ga8_A Hypothetical 39.9 kDa p 89.5 0.18 6.2E-06 47.8 3.0 23 56-78 24-46 (359)
476 1e69_A Chromosome segregation 89.5 0.16 5.5E-06 47.2 2.7 20 58-77 26-45 (322)
477 3cwq_A Para family chromosome 89.4 0.81 2.8E-05 39.5 7.0 32 121-161 68-100 (209)
478 3cnl_A YLQF, putative uncharac 89.4 0.32 1.1E-05 43.9 4.5 73 143-229 13-98 (262)
479 3n70_A Transport activator; si 89.0 0.26 8.8E-06 40.0 3.2 23 55-77 23-45 (145)
480 3qkt_A DNA double-strand break 89.0 0.19 6.5E-06 47.1 2.8 20 58-77 25-44 (339)
481 1w1w_A Structural maintenance 89.0 0.19 6.4E-06 48.7 2.8 23 56-78 26-48 (430)
482 3h2y_A GTPase family protein; 88.9 0.6 2.1E-05 44.3 6.3 83 144-231 61-159 (368)
483 2qmh_A HPR kinase/phosphorylas 88.9 0.25 8.6E-06 43.0 3.3 23 55-77 33-55 (205)
484 1njg_A DNA polymerase III subu 88.9 0.2 7E-06 43.0 2.7 22 57-78 46-67 (250)
485 2zan_A Vacuolar protein sortin 88.7 0.21 7.1E-06 48.8 3.0 25 55-79 166-190 (444)
486 1sxj_E Activator 1 40 kDa subu 88.7 0.17 6E-06 47.1 2.3 21 58-78 38-58 (354)
487 3tmk_A Thymidylate kinase; pho 88.6 0.3 1E-05 43.0 3.6 23 55-77 4-26 (216)
488 3d8b_A Fidgetin-like protein 1 88.6 0.85 2.9E-05 42.9 7.1 24 55-78 116-139 (357)
489 2qby_A CDC6 homolog 1, cell di 88.6 0.22 7.4E-06 46.5 2.9 24 55-78 44-67 (386)
490 4b4t_H 26S protease regulatory 88.5 0.62 2.1E-05 45.7 6.0 27 53-79 240-266 (467)
491 2chg_A Replication factor C sm 88.4 0.23 8E-06 42.1 2.8 21 58-78 40-60 (226)
492 2axn_A 6-phosphofructo-2-kinas 88.3 0.26 8.8E-06 49.2 3.3 23 55-77 34-56 (520)
493 4b4t_I 26S protease regulatory 88.3 0.74 2.5E-05 44.7 6.4 27 53-79 213-239 (437)
494 3vfd_A Spastin; ATPase, microt 88.2 0.27 9.4E-06 46.8 3.4 25 55-79 147-171 (389)
495 2qz4_A Paraplegin; AAA+, SPG7, 88.1 0.3 1E-05 43.2 3.4 24 55-78 38-61 (262)
496 3cf0_A Transitional endoplasmi 88.1 0.3 1E-05 44.8 3.5 25 55-79 48-72 (301)
497 1fnn_A CDC6P, cell division co 88.0 0.26 8.9E-06 46.2 3.0 22 58-79 46-67 (389)
498 3k9g_A PF-32 protein; ssgcid, 87.9 2.4 8.3E-05 37.6 9.3 33 120-161 144-176 (267)
499 4hlc_A DTMP kinase, thymidylat 87.9 0.31 1.1E-05 42.4 3.2 22 56-77 2-23 (205)
500 1ko7_A HPR kinase/phosphatase; 87.8 0.26 8.9E-06 45.9 2.8 24 56-79 144-167 (314)
No 1
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=100.00 E-value=4.3e-60 Score=457.01 Aligned_cols=298 Identities=50% Similarity=0.862 Sum_probs=261.5
Q ss_pred CCcEEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCCcCC
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~~~ 134 (359)
|+++|+|||.||||||||||+|++.. +.++++||||++|+.|.+.+++.|+++++++++|.+..+.++.||||||+.++
T Consensus 1 m~~kI~IVG~pnvGKSTL~n~Lt~~~-~~v~~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~ 79 (363)
T 1jal_A 1 MGFKCGIVGLPNVGKSTLFNALTKAG-IEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAG 79 (363)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTC-------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCC-CcccCCCCceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCCccc
Confidence 46899999999999999999999544 78999999999999999999999999999999999999999999999999998
Q ss_pred CCcCcchhhhHhhHHHhcccceEEeecCCCccEEEeCCcccCCcchHHHHhhhhhccHHHHHHHHHHHhhhccccccchh
Q 018241 135 ASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKL 214 (359)
Q Consensus 135 ~~~~~~~~~~~l~~i~~aD~il~Vvd~~~~~~v~~v~nk~d~~~~~~~i~~el~~~d~~~l~~~~~~~~~~~~~~~~Sa~ 214 (359)
++.+++++++|+++++++|+++||+|++++.+++|+.|++||++|++.+++||.++|++.+++++.++.+..+ .+. +
T Consensus 80 a~~~~gl~~~fl~~ir~ad~il~VvD~~~~~~v~~v~~~~dp~~d~~~i~~EL~~~d~~~~~k~~~~~~k~~k-~g~--~ 156 (363)
T 1jal_A 80 ASKGEGLGNKFLANIRETDAIGHVVRCFENDDIVHVAGKIDPLDDIDTINTELALADLDSCERAIQRLQKRAK-GGD--K 156 (363)
T ss_dssp HHHHGGGTCCHHHHHHTCSEEEEEEECSCC---------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TTC--H
T ss_pred ccccchHHHHHHHHHHhcCeEEEEEecCCCCceeeecCCcChHHHHHHHHHHHHhhhHHHHhhHHHHHHHHhh-ccc--h
Confidence 8878889999999999999999999999999999999999999999999999999999999999998877644 333 4
Q ss_pred hHHHHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHhhhhcCCeEEEEeCCCcccCCCCCChhHHHHHHHHHhcCCeE
Q 018241 215 KEDAEKAALEKIQQALMDGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGR 294 (359)
Q Consensus 215 ~~~~~~~ll~~i~~~L~~~~~~~~~~~t~~~~e~i~~~~~l~~kp~~y~~nv~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 294 (359)
......++++++.++|+++.+++..+|++++.++++.+.+++.||++|++|+++.++ .+ +.+.+++++++.+++..+
T Consensus 157 ~~~~~~~~l~~~~~~L~~~~~~~~~~~~~~e~~~l~~~~llt~KPvi~v~N~~e~~~-~~--n~~~~~v~~~~~~~~~~~ 233 (363)
T 1jal_A 157 EAKFELSVMEKILPVLENAGMIRSVGLDKEELQAIKSYNFLTLKPTMYIANVNEDGF-EN--NPYLDRVREIAAKEGAVV 233 (363)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCGGGSCCCHHHHHHHGGGCCSTTSCEEEEEECCTTCS-SS--CHHHHHHHHHHHHTTCEE
T ss_pred hHHHHHHHHHHHHHHHhcCCCccccCCCHHHHHHHHHhhcccCCcEEEEEecccccc-cc--cHHHHHHHHHHHHcCCCE
Confidence 455677899999999999999887789988888888899999999999999998776 33 789999999998888999
Q ss_pred EEeeHHHHHHHcCCCHHHHHHHHHHcCCCCchHHHHHHHHHHhcCCeEEecCCCCceecccccCC
Q 018241 295 VTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWTIRAG 359 (359)
Q Consensus 295 i~~sa~le~~l~~l~~~~~~~~l~~~~~~~~~l~~li~~~~~~L~li~ffT~g~~evraWt~~~g 359 (359)
|++||++|++|++|+++++.+||+++|+.++|++++|+++|++||||+|||+||+|+|||||++|
T Consensus 234 i~~sA~~E~el~~l~~~e~~~~l~~~g~~~~gl~~li~~~~~~L~li~~ft~g~~e~raw~i~~G 298 (363)
T 1jal_A 234 VPVCAAIESEIAELDDEEKVEFLQDLGIEEPGLNRVIRAGYALLNLQTYFTAGVKEVRAWTVSVG 298 (363)
T ss_dssp EEECHHHHHHGGGSCSSTTHHHHTTSSCCSCTTHHHHHHHHHHTTEEEEEEECSSEEEEEEEETT
T ss_pred EEechHHHHHHHhcCHHHHHHHHHHhCcccccHHHHHHHHHHHhCCEEEECCCCCCcceeEecCC
Confidence 99999999999999999999999999999999999999999999999999999999999999998
No 2
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=100.00 E-value=2.5e-58 Score=448.59 Aligned_cols=303 Identities=41% Similarity=0.670 Sum_probs=236.3
Q ss_pred cccCCcEEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCC
Q 018241 52 KISMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGL 131 (359)
Q Consensus 52 ~~~~~~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~ 131 (359)
+..++++|+|||+||||||||||+|++.. ..++++||||++|+.|.+.+++.|+++++++++|.+..+.++.||||||+
T Consensus 18 ~i~~~~kvgIVG~pnvGKSTL~n~Ltg~~-~~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl 96 (396)
T 2ohf_A 18 RFGTSLKIGIVGLPNVGKSTFFNVLTNSQ-ASAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGL 96 (396)
T ss_dssp CSSSCCCEEEECCSSSSHHHHHHHHHC--------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC-
T ss_pred hccCCCEEEEECCCCCCHHHHHHHHHCCC-ccccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCc
Confidence 44567899999999999999999999544 58899999999999999999999999999999999888999999999999
Q ss_pred cCCCCcCcchhhhHhhHHHhcccceEEeecCCCccEEEeCCcccCCcchHHHHhhhhhccHHHHHHHHHHHhhhcccccc
Q 018241 132 VKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQ 211 (359)
Q Consensus 132 ~~~~~~~~~~~~~~l~~i~~aD~il~Vvd~~~~~~v~~v~nk~d~~~~~~~i~~el~~~d~~~l~~~~~~~~~~~~~~~~ 211 (359)
.++++.++++++.|+++++++|+++||+|++++.++.++.+..||+++++.+++|+.+++++.++++++++.+...+.+
T Consensus 97 ~~~as~~~glg~~~l~~ir~aD~Il~VvD~~~~~~i~~v~~~~dP~~di~~i~~El~l~d~~~~~k~~~~~~k~~~~~g- 175 (396)
T 2ohf_A 97 VKGAHNGQGLGNAFLSHISACDGIFHLTRAFEDDDITHVEGSVDPIRDIEIIHEELQLKDEEMIGPIIDKLEKVAVRGG- 175 (396)
T ss_dssp ----------CCHHHHHHHTSSSEEEEEEC------------CTTHHHHHHHHHHHHHHHHHHHHHHHHTTCSCC-----
T ss_pred ccccchhhHHHHHHHHHHHhcCeEEEEEecCCCcchhhhcCCCChHHHHHHhhhhhhhhhHHHHHHhhhhhhhhhhccc-
Confidence 9988888899999999999999999999999999999999999999999999999999999999999888766533111
Q ss_pred chhhHHHHHHHHHHHHHHhcCC-CCCC-CCCCCHHHHHHHHHHhhhhcCCeEEEEeCCCcccCCCCCChhHHHHHHHHHh
Q 018241 212 SKLKEDAEKAALEKIQQALMDG-KPAR-SVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASD 289 (359)
Q Consensus 212 Sa~~~~~~~~ll~~i~~~L~~~-~~~~-~~~~t~~~~e~i~~~~~l~~kp~~y~~nv~~~~~~~~~~~~~~~~i~~~~~~ 289 (359)
++.......+++.+.++|+++ ++++ ..+|++++.+.++.++++++||++|++||+++++.++ ++.+.+++++++..
T Consensus 176 -~~~~~~~~~ll~~i~~~L~e~~~~~~~~~~~~~~e~e~i~~~~llt~KPviy~~Nv~e~~~~~~-~n~~~~~v~~~~~~ 253 (396)
T 2ohf_A 176 -DKKLKPEYDIMCKVKSWVIDQKKPVRFYHDWNDKEIEVLNKHLFLTSKPMVYLVNLSEKDYIRK-KNKWLIKIKEWVDK 253 (396)
T ss_dssp -----CCHHHHHHHHHHHTTC--CCGGGCCCCCHHHHHHHHHHCCGGGSCEEEEEECCHHHHHHT-CCHHHHHHHHHHHH
T ss_pred -chhhhhHHHHHHHHHHHHHhcCcchhhcccCCHHHHHHHHHHHHHhCCceEEEEEecHHHhccc-ccHHHHHHHHHHHh
Confidence 245556788999999999998 7775 2379988889999999999999999999998887643 27899999998775
Q ss_pred c--CCeEEEeeHHHHHHHcCCCHHHHHHHHHHcCCCCchHHHHHHHHHHhcCCeEEecCCCCceecccccCC
Q 018241 290 L--QSGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWTIRAG 359 (359)
Q Consensus 290 ~--~~~~i~~sa~le~~l~~l~~~~~~~~l~~~~~~~~~l~~li~~~~~~L~li~ffT~g~~evraWt~~~g 359 (359)
+ +..+|++||++|++|++|+++++.+||+++|++ +|++++|+++|++|+||+|||+||||||||||++|
T Consensus 254 ~~~~~~~v~~sa~~E~~l~~l~~~e~~~~l~~~g~~-~~l~~li~~~~~~L~li~~fT~g~~evrawti~~g 324 (396)
T 2ohf_A 254 YDPGALVIPFSGALELKLQELSAEERQKYLEANMTQ-SALPKIIKAGFAALQLEYFFTAGPDEVRAWTIRKG 324 (396)
T ss_dssp HSTTCEEEEECHHHHHHHHHSCHHHHHHHHHHTTCC-CSHHHHHHHHHHHTTEEEEEEESSSEEEEEEEETT
T ss_pred hCCCCeEEEEEcHHHHHHhhCCHHHHHHHHHHhCCC-chHHHHHHHHHHHhCCEEEECCCCCcceeEEecCC
Confidence 3 678999999999999999999999999999986 99999999999999999999999999999999998
No 3
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=100.00 E-value=3.1e-57 Score=441.83 Aligned_cols=303 Identities=41% Similarity=0.648 Sum_probs=278.6
Q ss_pred ccCCcEEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCCc
Q 018241 53 ISMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLV 132 (359)
Q Consensus 53 ~~~~~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~ 132 (359)
..++.+|||||+||||||||||+|+|...+.++++||||++|+.|.+.+++.|++.++++++|.+.++.++.++||||+.
T Consensus 17 v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~ 96 (392)
T 1ni3_A 17 PGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLT 96 (392)
T ss_dssp SSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGC
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEeccccc
Confidence 34678999999999999999999997666689999999999999999999999999999999999999999999999999
Q ss_pred CCCCcCcchhhhHhhHHHhcccceEEeecCCCccEEEeCCcccCCcchHHHHhhhhhccHHHHHHHHHHHhhh-cccccc
Q 018241 133 KGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPKSDVDVINLELVFSDLDQIEKRMEKLKKG-KAKDSQ 211 (359)
Q Consensus 133 ~~~~~~~~~~~~~l~~i~~aD~il~Vvd~~~~~~v~~v~nk~d~~~~~~~i~~el~~~d~~~l~~~~~~~~~~-~~~~~~ 211 (359)
++.+.++++++.|+.+++.+|++++|+|++++.+++++.+++||++++..+.+|+..+|++.+++.+.++.+. .. .+.
T Consensus 97 ~~~s~~e~L~~~fl~~ir~~d~il~Vvd~~~d~~i~~v~~~~dP~~di~ildeel~~~D~~~~~k~~~~l~~~~~~-~g~ 175 (392)
T 1ni3_A 97 KGASTGVGLGNAFLSHVRAVDAIYQVVRAFDDAEIIHVEGDVDPIRDLSIIVDELLIKDAEFVEKHLEGLRKITSR-GAN 175 (392)
T ss_dssp CCCCSSSSSCHHHHHHHTTCSEEEEEEECCCTTCSSCCSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC-SSC
T ss_pred cCCcHHHHHHHHHHHHHHHHHHHHHHHhccccceeeeeccccCcchhhhhchhhhHHHHHHHHHHHHHHHHHHHHh-cCC
Confidence 9988889999999999999999999999999999999999999999999999999999999999999888776 43 221
Q ss_pred --chhhHHHHHHHHHHHHHHhcCC-CCCCCCCCCHHHHHHHHHHhhhhcCCeEEEEeCCCcccC-CCCCChhHHHHHHHH
Q 018241 212 --SKLKEDAEKAALEKIQQALMDG-KPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLA-DPGSNPHVNEVMNLA 287 (359)
Q Consensus 212 --Sa~~~~~~~~ll~~i~~~L~~~-~~~~~~~~t~~~~e~i~~~~~l~~kp~~y~~nv~~~~~~-~~~~~~~~~~i~~~~ 287 (359)
-++...++.++++++.++|++| +++++.+|++++.++++.+++++.||++|++|+++.++. .+ +.+.+++++++
T Consensus 176 ti~sh~~~~~~~l~~~i~~~L~~G~~~~~~~~~~~~e~e~i~~~~~lt~kp~~y~~Nv~e~~~~~~~--~~~~~~~~~~~ 253 (392)
T 1ni3_A 176 TLEMKAKKEEQAIIEKVYQYLTETKQPIRKGDWSNREVEIINSLYLLTAKPVIYLVNMSERDFLRQK--NKYLPKIKKWI 253 (392)
T ss_dssp SSSHHHHHHHHHHHHHHHHHHHTTCSCGGGSCCCHHHHHHHHTTCCGGGSCEEEEEECCHHHHTTTC--CSSHHHHHHHH
T ss_pred ccccccHHHHHHHHHHHHHHhccCCceeecCCCCHHHHHHHHHHhhhccCceEEEEEecchhhcccc--hHHHHHHHHHH
Confidence 1567778889999999999999 888887899889999999999999999999999998775 33 78899999999
Q ss_pred HhcC--CeEEEeeHHHHHHHcCCCHHHHHHHHHHcCCCCchHHHHHHHHHHhcCCeEEecCCCCceecccccCC
Q 018241 288 SDLQ--SGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWTIRAG 359 (359)
Q Consensus 288 ~~~~--~~~i~~sa~le~~l~~l~~~~~~~~l~~~~~~~~~l~~li~~~~~~L~li~ffT~g~~evraWt~~~g 359 (359)
.+++ ..+|++||++|++|++|+++|+.+||+++| .++|++++|+++|++|+||+|||+||+|||||||++|
T Consensus 254 ~~~~p~~~~v~~sa~~E~~l~~l~~~~~~~~l~~~g-~~~gl~~~i~~~~~~L~l~~~ft~g~~e~rawti~~G 326 (392)
T 1ni3_A 254 DENSPGDTLIPMSVAFEERLTNFTEEEAIEECKKLN-TKSMLPKIIVTGYNALNLINYFTCGEDEVRSWTIRKG 326 (392)
T ss_dssp HTTSTTCCEEEECHHHHHHHTTSCHHHHHHHHHHTT-CCCSHHHHHHHHHHHTTEEEEEECCSSEEEEEEEETT
T ss_pred HhcCCCCeEEEEEhHHHHHHhhCCHHHHHHHHHHhC-CcccHHHHHHHHHHHhCCEEEECCCCCcceeEEeCCC
Confidence 8765 789999999999999999999999999999 8999999999999999999999999999999999998
No 4
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=100.00 E-value=5e-56 Score=430.81 Aligned_cols=298 Identities=51% Similarity=0.778 Sum_probs=260.9
Q ss_pred cEEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCCCccchhcccccccc----ccCceEEEEecCCCc
Q 018241 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQK----AVPASVEFVDIAGLV 132 (359)
Q Consensus 57 ~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~----~~~~~i~lvDtpG~~ 132 (359)
++|+|||.||||||||||+|++. .+.++++||||++|+.|.+.+++.|++.+++++++.+ ..+.++.||||||+.
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~-~~~v~~~p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl~ 80 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRA-NALAANYPFATIDKNVGVVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGLV 80 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHH-HTTCSSCCGGGGSTTEEEEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC-CCcccCCCCceeccceeeEecChHHHHHHHHHhcccccccccCCceEEEEECCCcc
Confidence 68999999999999999999965 4778999999999999999999999999999999887 667899999999999
Q ss_pred CCCCcCcchhhhHhhHHHhcccceEEeecCCCccEEEeCCcccCCcchHHHHhhhhhccHHHHHHHHHHHhhhccccccc
Q 018241 133 KGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQS 212 (359)
Q Consensus 133 ~~~~~~~~~~~~~l~~i~~aD~il~Vvd~~~~~~v~~v~nk~d~~~~~~~i~~el~~~d~~~l~~~~~~~~~~~~~~~~S 212 (359)
++++.+++++++|+++++.||+++||+|++++.+++|+.|++||++|++.+++||.++|++.+++++.++.+..+ .
T Consensus 81 ~~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~~~~~~~v~~~~dp~~d~~~i~~EL~~~d~~~l~k~~~~~~~~~~-~--- 156 (368)
T 2dby_A 81 KGAHKGEGLGNQFLAHIREVAAIAHVLRCFPDPDVVHVMGRVDPLEDAEVVETELLLADLATLERRLERLRKEAR-A--- 156 (368)
T ss_dssp CCCCSSSCTTHHHHHHHHTCSEEEEEEECCCCH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H---
T ss_pred ccccccchHHHHHHHHHHhCCEEEEEEECCCCCceeEeecccChHHHHHHHhhHHHHccHHHHHHHHHHHHhhhc-c---
Confidence 998888899999999999999999999999999999999999999999999999999999999999998776532 1
Q ss_pred hhhHHHHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHhhhhcCCeEEEEeCCCcccCCCCCChhHHHHHHHHHhcCC
Q 018241 213 KLKEDAEKAALEKIQQALMDGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQS 292 (359)
Q Consensus 213 a~~~~~~~~ll~~i~~~L~~~~~~~~~~~t~~~~e~i~~~~~l~~kp~~y~~nv~~~~~~~~~~~~~~~~i~~~~~~~~~ 292 (359)
.+......++++++.++|+++.+.++.+|++++.+.++.+.+++.||++|++|+.+.++.+..++.+.+++++++++++.
T Consensus 157 ~~~~~~~~~~l~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~~lt~KPvi~v~N~~e~d~~~~~~n~~~~~v~~~a~~~g~ 236 (368)
T 2dby_A 157 DRERLPLLEAAEGLYVHLQEGKPARTFPPSEAVARFLKETPLLTAKPVIYVANVAEEDLPDGRGNPQVEAVRRKALEEGA 236 (368)
T ss_dssp CGGGHHHHHHHHHHHHHHHTTCCGGGSCCCHHHHHHHHHSCCGGGSCEEEEEECCGGGTTTCTTCHHHHHHHHHHHHHTC
T ss_pred chhHHHHHHHHHHHHHHHhcCCCcccCCCCHHHHHHHHHHhhhhcCCeEEeccccHHhhcccchhhHHHHHHHHHHHcCC
Confidence 13455677899999999999888877789988888899999999999999999998776531116789999999988889
Q ss_pred eEEEeeHHHHHHHcCCCHHHHHHHHHHcCCCCchHHHHHHHHHHhcCCeEEecCCCCceecccccCC
Q 018241 293 GRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWTIRAG 359 (359)
Q Consensus 293 ~~i~~sa~le~~l~~l~~~~~~~~l~~~~~~~~~l~~li~~~~~~L~li~ffT~g~~evraWt~~~g 359 (359)
.++++||+.|++|.+|+++++.+||+++|+.++|++++|+++|++|+||+|||+||+|+|||||++|
T Consensus 237 ~vv~iSAk~E~el~eL~~~~~~~~l~~~g~~~~gl~~li~~~~~~L~li~~ft~g~~e~~aw~i~~g 303 (368)
T 2dby_A 237 EVVVVSARLEAELAELSGEEARELLAAYGLQESGLQRLARAGYRALDLLTFFTAGEKEVRAWTVRRG 303 (368)
T ss_dssp EEEEECHHHHHHHHTSCHHHHHHHHHHTTCCSCHHHHHHHHHHHHTTEEEEEEESSSCEEEEEEETT
T ss_pred eEEEeechhHHHHHHhchHHHHHHHHHhCcchhhHHHHHHHHHHHhCCEEEECCCCCCcceEEecCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999997
No 5
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=100.00 E-value=5.6e-42 Score=335.99 Aligned_cols=291 Identities=24% Similarity=0.357 Sum_probs=195.9
Q ss_pred cEEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEE----EeCCCccchhc-----cccccccccCceEEEEe
Q 018241 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIV----AVPDPRLHVLS-----GLSKSQKAVPASVEFVD 127 (359)
Q Consensus 57 ~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~----~~~~~r~~~l~-----~~~~~~~~~~~~i~lvD 127 (359)
++|+|||.||||||||||+|++.. +.++++||||++++.|.+ .++++|++.++ .++++.+ ..++.|||
T Consensus 1 ~kI~ivG~pnvGKSTL~n~L~~~~-~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~--~~~i~lvD 77 (397)
T 1wxq_A 1 MEIGVVGKPNVGKSTFFSAATLVD-VEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLA--LIPVKMVD 77 (397)
T ss_dssp CEEEEEECTTSSHHHHHHHHHC---------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEE--EEEEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC-CcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcc--eEEEEEEE
Confidence 589999999999999999999655 888999999999999974 45666665443 1222211 24699999
Q ss_pred cCCCcCCCCcCcchhhhHhhHHHhcccceEEeecCCCccE-EEeCCcccCCcchHHHHhhhhhccHHHHHHHHHHHhhhc
Q 018241 128 IAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDI-VHVNGKVDPKSDVDVINLELVFSDLDQIEKRMEKLKKGK 206 (359)
Q Consensus 128 tpG~~~~~~~~~~~~~~~l~~i~~aD~il~Vvd~~~~~~v-~~v~nk~d~~~~~~~i~~el~~~d~~~l~~~~~~~~~~~ 206 (359)
|||+.++++.+++++++|+.++++||++++|+|++++..+ ..+...+||++|++.+++||.++|++.++++++++.+..
T Consensus 78 tpG~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~~~~~g~~~~~~dp~~d~~~i~~EL~~~d~~~l~~~~~~~~k~~ 157 (397)
T 1wxq_A 78 VAGLVPGAHEGRGLGNKFLDDLRMASALIHVVDATGKTDPEGQPTDYHDPVEDIEFLEREIDYWIYGILSKGWDKFAKRI 157 (397)
T ss_dssp CC---------------CCCSSTTCSEEEEEEETTCCBCTTSCBCSCCCHHHHHHHHHHHHHHHHHHHHHTTTHHHHSTT
T ss_pred CCCcccchhhhhhHHHHHHHHHhcCCEEEEEEecccccCCCCcccCCCCcHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 9999988777788999999999999999999999886211 111225699999999999999999999999999988664
Q ss_pred cccccchhhHHH--------HHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHhhhhcCCeEEEEeCCCcccCCCCCCh
Q 018241 207 AKDSQSKLKEDA--------EKAALEKIQQALMDGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNP 278 (359)
Q Consensus 207 ~~~~~Sa~~~~~--------~~~ll~~i~~~L~~~~~~~~~~~t~~~~e~i~~~~~l~~kp~~y~~nv~~~~~~~~~~~~ 278 (359)
+..+.++..... -.+.+..+.+.|..+.+. .+|++++...+..+.+++.||++|++|+.|.. . +.
T Consensus 158 ~~~~~~~~~~~~~~l~g~~~~~~~~~~~l~~l~~~~~~--~~~~~~e~~~l~~~~~~~~kP~i~v~NK~D~~---~--~~ 230 (397)
T 1wxq_A 158 KLQKIKLESAIAEHLSGIGVNENDVWEAMHKLNLPEDP--TKWSQDDLLAFASEIRRVNKPMVIAANKADAA---S--DE 230 (397)
T ss_dssp TSSCCCHHHHHHHHTGGGTCCHHHHHHHHHHTTCCSCG--GGCCHHHHHHHHHHHHHHHSCEEEEEECGGGS---C--HH
T ss_pred hhcCccHHHHHHHHhcccCCCHHHHHHHHHHhccCCcc--ccCCHHHHHHHHHhhhccCCCEEEEEeCcccc---c--hH
Confidence 422221111100 024567777777666553 37888877777878888999999999998743 2 56
Q ss_pred hHHHHHHHHHhcCCeEEEeeHHHHHHHcCC---------------------CHHHHH-------HHHHHcCCCCchHHHH
Q 018241 279 HVNEVMNLASDLQSGRVTISAQVEAELTEL---------------------PSEERV-------EYLASLGVSESGLGNL 330 (359)
Q Consensus 279 ~~~~i~~~~~~~~~~~i~~sa~le~~l~~l---------------------~~~~~~-------~~l~~~~~~~~~l~~l 330 (359)
+.+++.+.....+..++++||+.|.++.+| ++++++ +||+.+| ++|++++
T Consensus 231 ~l~~l~~~~~~~~~~vv~iSA~~e~~l~~L~~~~l~~~~p~~~~~~~~~~l~~~~~~~~e~ire~~l~~~g--~~g~~~~ 308 (397)
T 1wxq_A 231 QIKRLVREEEKRGYIVIPTSAAAELTLRKAAKAGFIEYIPGASEFKVLRDMSEKQKRALMVIKEKVLDRFG--STGVQEV 308 (397)
T ss_dssp HHHHHHHHHHHTTCEEEEECHHHHHHHHSCSSSCCCCSCC-----------------CTTHHHHHHTSSSS--SCSHHHH
T ss_pred HHHHHHHHHhhcCCcEEEEeccchhhHHHHHhhhhhhhcCCCccccccccCCHHHHHHHHHHHHHHHHHhC--cchHHHH
Confidence 677777766545678999999999999863 444443 6777888 7999999
Q ss_pred HH-HHHHhcCCeEEecCC----------CCceecccccCC
Q 018241 331 IR-STYSLLGLRTYFTSG----------EKETKAWTIRAG 359 (359)
Q Consensus 331 i~-~~~~~L~li~ffT~g----------~~evraWt~~~g 359 (359)
|+ ++|++|+|++|||+| ++|+|+|++++|
T Consensus 309 i~~~~~~~L~li~vft~~~~~~~~~~~g~~~~~~~~l~~G 348 (397)
T 1wxq_A 309 INRVVFDLLKLIPVYPVHDENKLTDQFGNVLPHVFLMKKG 348 (397)
T ss_dssp HHHHHHTTSCEEEEEEESCC-----CCSCSSCCCEEEETT
T ss_pred HHHHHHHHhCCeEEEeecccccccCCcCcccceeEEeCCC
Confidence 97 569999999999987 458899999987
No 6
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.4e-40 Score=322.47 Aligned_cols=243 Identities=20% Similarity=0.289 Sum_probs=170.1
Q ss_pred CCcEEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCCcCC
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~~~ 134 (359)
...+|||||+||||||||||+|| +..+.++++||||++|+.|.+.+++ .+++|+||||++++
T Consensus 71 g~a~V~ivG~PNvGKSTL~n~Lt-~~~~~v~~~pftT~~~~~g~~~~~~-----------------~~i~l~D~pGl~~~ 132 (376)
T 4a9a_A 71 GVASVGFVGFPSVGKSTLLSKLT-GTESEAAEYEFTTLVTVPGVIRYKG-----------------AKIQMLDLPGIIDG 132 (376)
T ss_dssp SSEEEEEECCCCHHHHHHHHHHH-SBCCCGGGTCSSCCCEEEEEEEETT-----------------EEEEEEECGGGCCC
T ss_pred CCCeEEEECCCCCCHHHHHHHHh-CCCCcccCCCCceeeeeeEEEEeCC-----------------cEEEEEeCCCccCC
Confidence 44799999999999999999999 5568899999999999999999985 67999999999999
Q ss_pred CCcCcchhhhHhhHHHhcccceEEeecCCCccEEEeCCcccCCcchHHHHhhhhhccHHHHHHHHHHHhhhccccccchh
Q 018241 135 ASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKL 214 (359)
Q Consensus 135 ~~~~~~~~~~~l~~i~~aD~il~Vvd~~~~~~v~~v~nk~d~~~~~~~i~~el~~~d~~~l~~~~~~~~~~~~~~~~Sa~ 214 (359)
++.+.+++++|++++++||+++||+|+ .||+++.+.++.||...++...+++...+.++.++.+++
T Consensus 133 a~~~~~~g~~~l~~i~~ad~il~vvD~------------~~p~~~~~~i~~EL~~~~~~l~~k~~~i~~nK~d~~gi~-- 198 (376)
T 4a9a_A 133 AKDGRGRGKQVIAVARTCNLLFIILDV------------NKPLHHKQIIEKELEGVGIRLNKTPPDILIKKKEKGGIS-- 198 (376)
T ss_dssp -----CHHHHHHHHHHHCSEEEEEEET------------TSHHHHHHHHHHHHHHTTEEETCCCCCEEEEECSSSCEE--
T ss_pred chhhhHHHHHHHHHHHhcCcccccccc------------CccHHHHHHHHHHHHHhhHhhccCChhhhhhHhhhhhhh--
Confidence 999999999999999999999999999 478888889999887766543222221111111111110
Q ss_pred hHHHHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHhhhhcCCeEEEEeCCCcccCCCCCChhHHHHHHHHHhcCCeE
Q 018241 215 KEDAEKAALEKIQQALMDGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGR 294 (359)
Q Consensus 215 ~~~~~~~ll~~i~~~L~~~~~~~~~~~t~~~~e~i~~~~~l~~kp~~y~~nv~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 294 (359)
.........++.++...+...++++.+|++|.+|+.++++ .+.+.. ..+...++
T Consensus 199 -----------------i~~~~~~~~l~~eeik~il~~~~lt~kpv~~~~nv~eddl--------~d~~~~-~~~~~~p~ 252 (376)
T 4a9a_A 199 -----------------ITNTVPLTHLGNDEIRAVMSEYRINSAEIAFRCDATVDDL--------IDVLEA-SSRRYMPA 252 (376)
T ss_dssp -----------------EEESSCCSSCCHHHHHHHHHHTTCCSEEEEECSCCCHHHH--------HHHHTT-TTCEEECE
T ss_pred -----------------hhcchhhhhccHHHHHHHHHHhcccCCCeeecccCCHHHH--------HHHHHH-HHhhccce
Confidence 0111122245666666666677888999999888865433 222211 11123456
Q ss_pred EEeeHHHHHHHcCCCHHHHHH------HHHHcCCCCchHHHHHHHHHHhcCCeEEecCCCCceecccccCC
Q 018241 295 VTISAQVEAELTELPSEERVE------YLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWTIRAG 359 (359)
Q Consensus 295 i~~sa~le~~l~~l~~~~~~~------~l~~~~~~~~~l~~li~~~~~~L~li~ffT~g~~evraWt~~~g 359 (359)
+.++++.+ +.+.++.+. ++...+..+++++++++++|++|+|++|||+||+|+||||+++|
T Consensus 253 i~v~nKid----~~~~eele~l~~~~~~~~is~~~e~gLd~Li~~~y~~L~Li~~fT~g~~E~rawt~~~~ 319 (376)
T 4a9a_A 253 IYVLNKID----SLSIEELELLYRIPNAVPISSGQDWNLDELLQVMWDRLNLVRIYTKPKGQIPDFTDPVV 319 (376)
T ss_dssp EEEEECGG----GSCHHHHHHHTTSTTEEECCTTTCTTHHHHHHHHHHHHCCEEEEECCSSSCCCSSSCEE
T ss_pred EEEEeccc----ccCHHHHHHHhcccchhhhhhhhcccchhHHHHHHHHcCCcEEEeCCCCCcCCCCcccc
Confidence 66665543 222233222 12223456789999999999999999999999999999998764
No 7
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.87 E-value=3.2e-22 Score=189.62 Aligned_cols=192 Identities=21% Similarity=0.265 Sum_probs=144.2
Q ss_pred cEEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCCcCCC-
Q 018241 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA- 135 (359)
Q Consensus 57 ~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~~~~- 135 (359)
-.|+|+|.||||||||+|+|+|...+.+++.|++|++...+....+. +.++.||||||+.++.
T Consensus 11 g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~~~~~----------------~~~i~lvDTPG~~~~~~ 74 (308)
T 3iev_A 11 GYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPN----------------EAQIIFLDTPGIYEPKK 74 (308)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETT----------------TEEEEEEECCCCCCCCT
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEEEEecCC----------------CCeEEEEECcCCCcccc
Confidence 58999999999999999999988888899999999999988887762 3679999999998655
Q ss_pred -Cc-CcchhhhHhhHHHhcccceEEeecCCC-----------------ccEEEeCCcccCCcchHHHHhhhhhccHHHHH
Q 018241 136 -SQ-GEGLGNKFLSHIREVDSILQVVRCFED-----------------NDIVHVNGKVDPKSDVDVINLELVFSDLDQIE 196 (359)
Q Consensus 136 -~~-~~~~~~~~l~~i~~aD~il~Vvd~~~~-----------------~~v~~v~nk~d~~~~~~~i~~el~~~d~~~l~ 196 (359)
.. ++.+...+...++++|++++|+|+++. .+++.+.||+|...+...+.. .++
T Consensus 75 ~~~l~~~~~~~~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~~~~pvilV~NK~Dl~~~~~~~~~--------~~~ 146 (308)
T 3iev_A 75 SDVLGHSMVEIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKPLNKPVIVVINKIDKIGPAKNVLP--------LID 146 (308)
T ss_dssp TCHHHHHHHHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGGGCCCEEEEEECGGGSSSGGGGHH--------HHH
T ss_pred chhHHHHHHHHHHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHhcCCCEEEEEECccCCCCHHHHHH--------HHH
Confidence 21 233445567788999999999999863 468899999997733222211 111
Q ss_pred HHHHHHhhhccccccchhhHHHHHHHHHHHHHHhcCCCCCCCC-CCCHH-----HHHHHH-HHhhhhcCCeEEEEeCCCc
Q 018241 197 KRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMDGKPARSV-TLNDF-----ERDSIK-QLCLLTMKPIIYVANVAES 269 (359)
Q Consensus 197 ~~~~~~~~~~~~~~~Sa~~~~~~~~ll~~i~~~L~~~~~~~~~-~~t~~-----~~e~i~-~~~~l~~kp~~y~~nv~~~ 269 (359)
.....+.......++||+.+.++.++++.+.+.+++++++++. .+++. ..+++| ++...+.+++||.+.+..+
T Consensus 147 ~l~~~~~~~~~i~~vSA~~g~gv~~L~~~l~~~l~~~~~~~~~~~~td~~~~~~~~e~irek~~~~~~~eiP~~~~v~i~ 226 (308)
T 3iev_A 147 EIHKKHPELTEIVPISALKGANLDELVKTILKYLPEGEPLFPEDMITDLPLRLLAAEIVREKAMMLTREEVPTSIAVKIN 226 (308)
T ss_dssp HHHHHCTTCCCEEECBTTTTBSHHHHHHHHHHHSCBCCCSSCTTCCBCCCHHHHHHHHHHHHHHHTCCTTHHHHCEEEEE
T ss_pred HHHHhccCCCeEEEEeCCCCCCHHHHHHHHHHhCccCCCCCCcccccCCCHHHHHHHHHHHHHHhhhhhhcCCeeEEEeE
Confidence 1111111111125789999999999999999999999888875 34433 467788 7888899999998877666
Q ss_pred ccC
Q 018241 270 DLA 272 (359)
Q Consensus 270 ~~~ 272 (359)
.+.
T Consensus 227 ~~~ 229 (308)
T 3iev_A 227 EIK 229 (308)
T ss_dssp EEE
T ss_pred EEE
Confidence 554
No 8
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.86 E-value=1.1e-21 Score=185.30 Aligned_cols=187 Identities=21% Similarity=0.210 Sum_probs=139.8
Q ss_pred cEEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCCcCCCC
Q 018241 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGAS 136 (359)
Q Consensus 57 ~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~~~~~ 136 (359)
.+|+|+|+||||||||+|+|+|...+.+++.|+||++...+.+..+ +.++.||||||+.+...
T Consensus 8 g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i~~~~-----------------~~~l~l~DTpG~~~~~~ 70 (301)
T 1wf3_A 8 GFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEG-----------------RRQIVFVDTPGLHKPMD 70 (301)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEET-----------------TEEEEEEECCCCCCCCS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEEEEEeC-----------------CcEEEEecCccccchhh
Confidence 4799999999999999999998888888999999998888776554 46899999999986543
Q ss_pred c-CcchhhhHhhHHHhcccceEEeecCC------------------CccEEEeCCcccCCcchHHHHhhhhhccHHHHHH
Q 018241 137 Q-GEGLGNKFLSHIREVDSILQVVRCFE------------------DNDIVHVNGKVDPKSDVDVINLELVFSDLDQIEK 197 (359)
Q Consensus 137 ~-~~~~~~~~l~~i~~aD~il~Vvd~~~------------------~~~v~~v~nk~d~~~~~~~i~~el~~~d~~~l~~ 197 (359)
. ++.+...+..+++++|++++|+|+++ +.+++.+.||+|.......+.. .
T Consensus 71 ~l~~~~~~~~~~~l~~ad~il~VvD~~~~~~~~~~~i~~~l~~~~~~~p~ilV~NK~Dl~~~~~~~~~--------~--- 139 (301)
T 1wf3_A 71 ALGEFMDQEVYEALADVNAVVWVVDLRHPPTPEDELVARALKPLVGKVPILLVGNKLDAAKYPEEAMK--------A--- 139 (301)
T ss_dssp HHHHHHHHHHHHHTSSCSEEEEEEETTSCCCHHHHHHHHHHGGGTTTSCEEEEEECGGGCSSHHHHHH--------H---
T ss_pred HHHHHHHHHHHHHHhcCCEEEEEEECCCCCChHHHHHHHHHHhhcCCCCEEEEEECcccCCchHHHHH--------H---
Confidence 2 22244456678899999999999876 2357889999997644321111 1
Q ss_pred HHHHHhhhccccccchhhHHHHHHHHHHHHHHhcCCCCCCCC-CC-CHH-----HHHHHH-HHhhhhcCCeEEEEeCCCc
Q 018241 198 RMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMDGKPARSV-TL-NDF-----ERDSIK-QLCLLTMKPIIYVANVAES 269 (359)
Q Consensus 198 ~~~~~~~~~~~~~~Sa~~~~~~~~ll~~i~~~L~~~~~~~~~-~~-t~~-----~~e~i~-~~~~l~~kp~~y~~nv~~~ 269 (359)
...+.......++||+.+.++.++++.+.+.+++++++++. .+ |+. ..+.+| ++...+..++||.+.+..+
T Consensus 140 -~~~~~~~~~~~~iSA~~g~gv~~l~~~l~~~l~~~~~~y~~~~~~td~~~~~~~~e~~Re~~~~~l~~eiP~~~~v~i~ 218 (301)
T 1wf3_A 140 -YHELLPEAEPRMLSALDERQVAELKADLLALMPEGPFFYPEDYAKSDQTFGEWVAEILREEAMKRLWHEVPYAVATKVE 218 (301)
T ss_dssp -HHHTSTTSEEEECCTTCHHHHHHHHHHHHTTCCBCCCSSCTTCCSBSSCHHHHHHHHHHHHHHHTCCTTHHHHCEEEEE
T ss_pred -HHHhcCcCcEEEEeCCCCCCHHHHHHHHHHhcccCCCCCCcccccCCCCHHHHHHHHHHHHHHHHhhcccCceEEEEEE
Confidence 11111111125789999999999999999999988877764 34 422 457777 7888899999998877766
Q ss_pred ccC
Q 018241 270 DLA 272 (359)
Q Consensus 270 ~~~ 272 (359)
++.
T Consensus 219 ~~~ 221 (301)
T 1wf3_A 219 EVA 221 (301)
T ss_dssp EEE
T ss_pred EEE
Confidence 664
No 9
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.80 E-value=6.7e-20 Score=175.90 Aligned_cols=150 Identities=31% Similarity=0.501 Sum_probs=116.7
Q ss_pred cEEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCCcCCCC
Q 018241 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGAS 136 (359)
Q Consensus 57 ~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~~~~~ 136 (359)
.+|+|||+||||||||+|+|+ .....++++||+|.+++.+.+.+++ ..++.++||||+.++++
T Consensus 159 a~V~lvG~~nvGKSTLln~L~-~~~~~i~~~~ftTl~p~~g~v~~~~----------------~~~~~l~DtPG~i~~a~ 221 (342)
T 1lnz_A 159 ADVGLVGFPSVGKSTLLSVVS-SAKPKIADYHFTTLVPNLGMVETDD----------------GRSFVMADLPGLIEGAH 221 (342)
T ss_dssp CCEEEESSTTSSHHHHHHHSE-EECCEESSTTSSCCCCCEEEEECSS----------------SCEEEEEEHHHHHHHTT
T ss_pred CeeeeeCCCCCCHHHHHHHHH-cCCCccccCCccccCceEEEEEeCC----------------CceEEEecCCCCccccc
Confidence 479999999999999999999 5556778999999999999988875 24699999999988777
Q ss_pred cCcchhhhHhhHHHhcccceEEeecCC-------------------------CccEEEeCCcccCCcchHHHHhhhhhcc
Q 018241 137 QGEGLGNKFLSHIREVDSILQVVRCFE-------------------------DNDIVHVNGKVDPKSDVDVINLELVFSD 191 (359)
Q Consensus 137 ~~~~~~~~~l~~i~~aD~il~Vvd~~~-------------------------~~~v~~v~nk~d~~~~~~~i~~el~~~d 191 (359)
...++...|+.++..+|+++||+|+++ +.+++.+.||+|.....+.
T Consensus 222 ~~~~l~~~fl~~i~~~d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~~~e~--------- 292 (342)
T 1lnz_A 222 QGVGLGHQFLRHIERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEAAEN--------- 292 (342)
T ss_dssp CTTTTHHHHHHHHHHCCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTHHHH---------
T ss_pred ccchhHHHHHHHHHhccEEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECccCCCCHHH---------
Confidence 778899999999999999999999975 1246778899987643211
Q ss_pred HHHHHHHHHHHhhhccccccchhhHHHHHHHHHHHHHHhcCCCC
Q 018241 192 LDQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMDGKP 235 (359)
Q Consensus 192 ~~~l~~~~~~~~~~~~~~~~Sa~~~~~~~~ll~~i~~~L~~~~~ 235 (359)
++.....+........+||+++.++.++++.+.+.+.+.+.
T Consensus 293 ---~~~l~~~l~~~~~v~~iSA~tg~gi~eL~~~l~~~l~~~~~ 333 (342)
T 1lnz_A 293 ---LEAFKEKLTDDYPVFPISAVTREGLRELLFEVANQLENTPE 333 (342)
T ss_dssp ---HHHHHHHCCSCCCBCCCSSCCSSTTHHHHHHHHHHHTSCCC
T ss_pred ---HHHHHHHhhcCCCEEEEECCCCcCHHHHHHHHHHHHhhCcc
Confidence 11111112111122578999999999999999999976543
No 10
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.80 E-value=2.1e-20 Score=176.59 Aligned_cols=187 Identities=19% Similarity=0.161 Sum_probs=136.0
Q ss_pred cEEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCCc-CCC
Q 018241 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLV-KGA 135 (359)
Q Consensus 57 ~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~-~~~ 135 (359)
.+|+|+|+||||||||+|+|+|...+.+++.|++|++...|.+... +.++.|+||||+. +..
T Consensus 9 ~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~gi~~~~-----------------~~~i~~iDTpG~~~~~~ 71 (301)
T 1ega_A 9 GFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEG-----------------AYQAIYVDTPGLHMEEK 71 (301)
T ss_dssp EEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEET-----------------TEEEEEESSSSCCHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcceeeEEEEEEEC-----------------CeeEEEEECcCCCccch
Confidence 4899999999999999999998877788899999998888877655 3679999999996 221
Q ss_pred Cc-CcchhhhHhhHHHhcccceEEeecCC---------------CccEEEeCCcccCCcchHHHHhhhhhccHHHHHHHH
Q 018241 136 SQ-GEGLGNKFLSHIREVDSILQVVRCFE---------------DNDIVHVNGKVDPKSDVDVINLELVFSDLDQIEKRM 199 (359)
Q Consensus 136 ~~-~~~~~~~~l~~i~~aD~il~Vvd~~~---------------~~~v~~v~nk~d~~~~~~~i~~el~~~d~~~l~~~~ 199 (359)
.. +..+...+...++.+|++++|+|+++ ..|++.+.||+|...+...+.. ..
T Consensus 72 ~~l~~~~~~~~~~~l~~~D~vl~Vvd~~~~~~~~~~i~~~l~~~~~P~ilvlNK~D~~~~~~~~~~------------~l 139 (301)
T 1ega_A 72 RAINRLMNKAASSSIGDVELVIFVVEGTRWTPDDEMVLNKLREGKAPVILAVNKVDNVQEKADLLP------------HL 139 (301)
T ss_dssp HHHHHHHTCCTTSCCCCEEEEEEEEETTCCCHHHHHHHHHHHSSSSCEEEEEESTTTCCCHHHHHH------------HH
T ss_pred hhHHHHHHHHHHHHHhcCCEEEEEEeCCCCCHHHHHHHHHHHhcCCCEEEEEECcccCccHHHHHH------------HH
Confidence 11 11122234566789999999999864 3467889999998753222211 11
Q ss_pred HHHhhhc---cccccchhhHHHHHHHHHHHHHHhcCCCCCCCC-CCCHH-----HHHHHH-HHhhhhcCCeEEEEeCCCc
Q 018241 200 EKLKKGK---AKDSQSKLKEDAEKAALEKIQQALMDGKPARSV-TLNDF-----ERDSIK-QLCLLTMKPIIYVANVAES 269 (359)
Q Consensus 200 ~~~~~~~---~~~~~Sa~~~~~~~~ll~~i~~~L~~~~~~~~~-~~t~~-----~~e~i~-~~~~l~~kp~~y~~nv~~~ 269 (359)
..+.... ...++||+.+.++..+++.+.+.+++++++++. .+++. ..+.+| ++...+..++||.+.+..+
T Consensus 140 ~~l~~~~~~~~~i~iSA~~g~~v~~l~~~i~~~l~~~~~~~~~~~~~d~~~~~~~~e~~re~l~~~l~~e~p~~~~v~i~ 219 (301)
T 1ega_A 140 QFLASQMNFLDIVPISAETGLNVDTIAAIVRKHLPEATHHFPEDYITDRSQRFMASEIIREKLMRFLGAELPYSVTVEIE 219 (301)
T ss_dssp HHHHTTSCCSEEEECCTTTTTTHHHHHHHHHTTCCBCCCSSCTTCCSCCSHHHHHHHHHHHHHHHHHGGGCCTTEEEEEE
T ss_pred HHHHHhcCcCceEEEECCCCCCHHHHHHHHHHhCCcCCCCCCccccCCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEE
Confidence 1121111 125789999999999999999999988887764 33322 456678 7888899999997777666
Q ss_pred ccC
Q 018241 270 DLA 272 (359)
Q Consensus 270 ~~~ 272 (359)
++.
T Consensus 220 ~~~ 222 (301)
T 1ega_A 220 RFV 222 (301)
T ss_dssp EEE
T ss_pred EEE
Confidence 554
No 11
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.77 E-value=4e-19 Score=172.01 Aligned_cols=199 Identities=22% Similarity=0.232 Sum_probs=109.3
Q ss_pred ccccccccchhhhccCCCccchhhhhhhcCccccCCCCcchhh-----------------hh------hhhhccccCCcE
Q 018241 2 VRTAACNYLIPALTLLPKPMESSLFTRNANLIGVLGITTTSSR-----------------RR------FSSASKISMSLR 58 (359)
Q Consensus 2 v~~a~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~------~~~~~~~~~~~~ 58 (359)
|++|++.|.+|++ ..+....+ .++++|.+|++..... .. ..+.++...+++
T Consensus 107 ~~la~l~~~~~rl-~~~~~l~~-----~~~~i~~~g~ge~~~e~~~~~~~~~i~~l~~~l~~~~~~r~~~r~~r~~~~~~ 180 (364)
T 2qtf_A 107 IELARLKYELPII-KETYTKSK-----IGEQQGPLGAGTYGVESTIKFYKRRINKLMKELESIKIFKEKSIESNKRNNIP 180 (364)
T ss_dssp HHHHHHHHHHHHH-HHC--------------------------CHHHHHHHHHHHHHHHHHHHHC-------------CC
T ss_pred HHHHHHhhhchhh-hhhhHHHH-----hcCCCCcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCc
Confidence 5789999999999 44433333 4566676654432100 00 111112223444
Q ss_pred -EEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCCcCCCCc
Q 018241 59 -AGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGASQ 137 (359)
Q Consensus 59 -i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~~~~~~ 137 (359)
|+|+|+||||||||+|+|+|. ...+++.+|+|+++..+.+.+++ ..+.++||||++...+.
T Consensus 181 ~V~lvG~~naGKSTLln~L~~~-~~~~~~~~~~T~d~~~~~i~~~g-----------------~~v~l~DT~G~i~~lp~ 242 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTGL-TQKVDTKLFTTMSPKRYAIPINN-----------------RKIMLVDTVGFIRGIPP 242 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHCC------------CCSCEEEEEETT-----------------EEEEEEECCCBCSSCCG
T ss_pred EEEEECCCCCCHHHHHHHHHCC-CccccCCcccccCCEEEEEEECC-----------------EEEEEEeCCCchhcCCH
Confidence 999999999999999999954 45788999999999999998874 46899999998754332
Q ss_pred Ccchh---hhHhhHHHhcccceEEeecCCC----------------------ccEEEeCCcccCCcchHHHHhhhhhccH
Q 018241 138 GEGLG---NKFLSHIREVDSILQVVRCFED----------------------NDIVHVNGKVDPKSDVDVINLELVFSDL 192 (359)
Q Consensus 138 ~~~~~---~~~l~~i~~aD~il~Vvd~~~~----------------------~~v~~v~nk~d~~~~~~~i~~el~~~d~ 192 (359)
.+. ..++..++.+|++++|+|+++. .+++.+.||+|....... .. .
T Consensus 243 --~lve~f~~tl~~~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~~~-~~------~ 313 (364)
T 2qtf_A 243 --QIVDAFFVTLSEAKYSDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNKIDKINGDLY-KK------L 313 (364)
T ss_dssp --GGHHHHHHHHHGGGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEECGGGCCSCHH-HH------H
T ss_pred --HHHHHHHHHHHHHHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEECCCCCCchHH-HH------H
Confidence 222 3446678899999999998652 246778899997643210 00 0
Q ss_pred HHHHHHHHHH-hhhccccccchhhHHHHHHHHHHHHHHhcCC
Q 018241 193 DQIEKRMEKL-KKGKAKDSQSKLKEDAEKAALEKIQQALMDG 233 (359)
Q Consensus 193 ~~l~~~~~~~-~~~~~~~~~Sa~~~~~~~~ll~~i~~~L~~~ 233 (359)
..+......+ .......++||+++.++..+++.+.+.+...
T Consensus 314 ~~~~~l~~~l~~~~~~~~~~SA~~g~gi~~L~~~I~~~l~~~ 355 (364)
T 2qtf_A 314 DLVEKLSKELYSPIFDVIPISALKRTNLELLRDKIYQLATQL 355 (364)
T ss_dssp HHHHHHHHHHCSCEEEEEECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCcEEEEECCCCcCHHHHHHHHHHHhccc
Confidence 0111111111 1011114689999999999999998888643
No 12
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.74 E-value=2.5e-18 Score=172.03 Aligned_cols=152 Identities=26% Similarity=0.321 Sum_probs=115.5
Q ss_pred hccccCCcEEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecC
Q 018241 50 ASKISMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIA 129 (359)
Q Consensus 50 ~~~~~~~~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtp 129 (359)
++....+++|+|+|+||||||||+|+|++...+.++++|+||+++..+.+.+++ ..+.+||||
T Consensus 237 ~~~~r~~~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~~g-----------------~~~~l~DTa 299 (482)
T 1xzp_A 237 GILLNRGLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRG-----------------ILFRIVDTA 299 (482)
T ss_dssp HHHHHHCEEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETT-----------------EEEEEEESS
T ss_pred hhhccCCCEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEecCC-----------------eEEEEEECC
Confidence 344456789999999999999999999988788899999999999999888863 569999999
Q ss_pred CCc-CCCCcCcchh-hhHhhHHHhcccceEEeecCCC--------------ccEEEeCCcccCCcchHHHHhhhhhccHH
Q 018241 130 GLV-KGASQGEGLG-NKFLSHIREVDSILQVVRCFED--------------NDIVHVNGKVDPKSDVDVINLELVFSDLD 193 (359)
Q Consensus 130 G~~-~~~~~~~~~~-~~~l~~i~~aD~il~Vvd~~~~--------------~~v~~v~nk~d~~~~~~~i~~el~~~d~~ 193 (359)
|+. ++....+.++ ..++.+++.||++++|+|+++. .+++.+.||+|...... .+
T Consensus 300 G~~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~s~~~~~il~~l~~~piivV~NK~DL~~~~~----------~~ 369 (482)
T 1xzp_A 300 GVRSETNDLVERLGIERTLQEIEKADIVLFVLDASSPLDEEDRKILERIKNKRYLVVINKVDVVEKIN----------EE 369 (482)
T ss_dssp CCCSSCCTTCCCCCHHHHHHHHHHCSEEEEEEETTSCCCHHHHHHHHHHTTSSEEEEEEECSSCCCCC----------HH
T ss_pred CccccchhhHHHHHHHHHHHHhhcccEEEEEecCCCCCCHHHHHHHHHhcCCCEEEEEECcccccccC----------HH
Confidence 998 6655444443 3567889999999999998763 36789999999764311 11
Q ss_pred HHHHHHHHHhhhccccccchhhHHHHHHHHHHHHHHhc
Q 018241 194 QIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALM 231 (359)
Q Consensus 194 ~l~~~~~~~~~~~~~~~~Sa~~~~~~~~ll~~i~~~L~ 231 (359)
.+.+.. ........+||+++.++.++++.+.+.+.
T Consensus 370 ~~~~~~---~~~~~~i~iSAktg~Gi~eL~~~l~~~~~ 404 (482)
T 1xzp_A 370 EIKNKL---GTDRHMVKISALKGEGLEKLEESIYRETQ 404 (482)
T ss_dssp HHHHHH---TCSTTEEEEEGGGTCCHHHHHHHHHHHTH
T ss_pred HHHHHh---cCCCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 111111 11011257899999999999999888763
No 13
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.72 E-value=9.7e-18 Score=166.23 Aligned_cols=146 Identities=28% Similarity=0.289 Sum_probs=96.7
Q ss_pred cEEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCCcCCCC
Q 018241 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGAS 136 (359)
Q Consensus 57 ~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~~~~~ 136 (359)
++|+|||+||||||||||+|++...+.+++.||+|++...+.+.+.+ .++.+|||||+.....
T Consensus 2 ~~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~~~-----------------~~~~l~DT~G~~~~~~ 64 (439)
T 1mky_A 2 ATVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYG-----------------KTFKLVDTCGVFDNPQ 64 (439)
T ss_dssp CEEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETT-----------------EEEEEEECTTTTSSGG
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEECC-----------------eEEEEEECCCcccccc
Confidence 58999999999999999999987777889999999999999988874 5699999999975432
Q ss_pred c--CcchhhhHhhHHHhcccceEEeecCCC----------------ccEEEeCCcccCCcchHHHHhhhhhccHHHHHHH
Q 018241 137 Q--GEGLGNKFLSHIREVDSILQVVRCFED----------------NDIVHVNGKVDPKSDVDVINLELVFSDLDQIEKR 198 (359)
Q Consensus 137 ~--~~~~~~~~l~~i~~aD~il~Vvd~~~~----------------~~v~~v~nk~d~~~~~~~i~~el~~~d~~~l~~~ 198 (359)
. .+.+...+..++++||++++|+|+.+. .+++.+.||+|..... ..+. .
T Consensus 65 ~~~~~~~~~~~~~~~~~ad~il~V~D~~~~~~~~d~~i~~~l~~~~~p~ilv~NK~D~~~~~---~~~~--------~-- 131 (439)
T 1mky_A 65 DIISQKMKEVTLNMIREADLVLFVVDGKRGITKEDESLADFLRKSTVDTILVANKAENLREF---EREV--------K-- 131 (439)
T ss_dssp GCCCHHHHHHHHHHHTTCSEEEEEEETTTCCCHHHHHHHHHHHHHTCCEEEEEESCCSHHHH---HHHT--------H--
T ss_pred chHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEeCCCCcccc---HHHH--------H--
Confidence 1 223455677889999999999998762 3588999999964220 1100 0
Q ss_pred HHHHhhhc-cccccchhhHHHHHHHHHHHHHHhcC
Q 018241 199 MEKLKKGK-AKDSQSKLKEDAEKAALEKIQQALMD 232 (359)
Q Consensus 199 ~~~~~~~~-~~~~~Sa~~~~~~~~ll~~i~~~L~~ 232 (359)
.+...... ....+||+.+.++.++++.+.+.+++
T Consensus 132 ~~~~~lg~~~~~~iSA~~g~gv~~L~~~i~~~l~~ 166 (439)
T 1mky_A 132 PELYSLGFGEPIPVSAEHNINLDTMLETIIKKLEE 166 (439)
T ss_dssp HHHGGGSSCSCEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred HHHHhcCCCCEEEEeccCCCCHHHHHHHHHHhccc
Confidence 01111011 12468999999999999999888863
No 14
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.71 E-value=6.9e-17 Score=150.33 Aligned_cols=149 Identities=19% Similarity=0.267 Sum_probs=107.4
Q ss_pred CcEEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCCcCCC
Q 018241 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA 135 (359)
Q Consensus 56 ~~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~~~~ 135 (359)
.++|+++|.||||||||+|+|+|.. ..++++|++|.+...+.+...+ ..+.+|||||+.+..
T Consensus 3 ~~~I~lvG~~n~GKSTLin~l~g~~-~~v~~~~g~t~~~~~~~~~~~~-----------------~~~~liDtpG~~~~~ 64 (274)
T 3i8s_A 3 KLTIGLIGNPNSGKTTLFNQLTGSR-QRVGNWAGVTVERKEGQFSTTD-----------------HQVTLVDLPGTYSLT 64 (274)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTTC-EEEEECTTSSSEEEEEEEECSS-----------------CEEEEEECCCCSCSC
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCC-cccCCCCCeeEEEEEEEEEeCC-----------------CceEEEECcCCCccc
Confidence 4799999999999999999999554 7889999999999999887763 569999999997655
Q ss_pred CcC--cchhhhH---hhHHHhcccceEEeecCC--------------CccEEEeCCcccCCcchHHHHhhhhhccHHHHH
Q 018241 136 SQG--EGLGNKF---LSHIREVDSILQVVRCFE--------------DNDIVHVNGKVDPKSDVDVINLELVFSDLDQIE 196 (359)
Q Consensus 136 ~~~--~~~~~~~---l~~i~~aD~il~Vvd~~~--------------~~~v~~v~nk~d~~~~~~~i~~el~~~d~~~l~ 196 (359)
... ..+...+ ....+.+|++++|+|+++ +.+++.+.||+|...... ...+.+.+.
T Consensus 65 ~~~~~~~~~e~i~~~~~~~~~~d~ii~VvD~~~~~~~~~~~~~l~~~~~p~ivv~NK~Dl~~~~~------~~~~~~~l~ 138 (274)
T 3i8s_A 65 TISSQTSLDEQIACHYILSGDADLLINVVDASNLERNLYLTLQLLELGIPCIVALNMLDIAEKQN------IRIEIDALS 138 (274)
T ss_dssp C----CCHHHHHHHHHHHHTCCSEEEEEEEGGGHHHHHHHHHHHHHHTCCEEEEEECHHHHHHTT------EEECHHHHH
T ss_pred cccccCCHHHHHHHHHHhhcCCCEEEEEecCCChHHHHHHHHHHHhcCCCEEEEEECccchhhhh------HHHHHHHHH
Confidence 311 1122222 122378999999999987 357899999999643211 111222232
Q ss_pred HHHHHHhhhccccccchhhHHHHHHHHHHHHHHhcCC
Q 018241 197 KRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMDG 233 (359)
Q Consensus 197 ~~~~~~~~~~~~~~~Sa~~~~~~~~ll~~i~~~L~~~ 233 (359)
+.+. .....+||+.+.++.++++.+.+.++..
T Consensus 139 ~~lg-----~~~i~~SA~~g~gi~el~~~i~~~~~~~ 170 (274)
T 3i8s_A 139 ARLG-----CPVIPLVSTRGRGIEALKLAIDRYKANE 170 (274)
T ss_dssp HHHT-----SCEEECCCGGGHHHHHHHHHHHTCCCCC
T ss_pred HhcC-----CCEEEEEcCCCCCHHHHHHHHHHHHhcC
Confidence 2221 1225789999999999999999888654
No 15
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.71 E-value=8.3e-17 Score=147.51 Aligned_cols=166 Identities=12% Similarity=0.024 Sum_probs=102.4
Q ss_pred cCCcEEEEEecCCCChhHHHHHHHhccccccCCCC-ceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCCc
Q 018241 54 SMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFP-FCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLV 132 (359)
Q Consensus 54 ~~~~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p-~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~ 132 (359)
...++|+|||.||||||||+|+|+|......+..+ ++|+.+..+.+... +.++.||||||+.
T Consensus 19 ~~~l~I~lvG~~g~GKSSlin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~-----------------~~~i~liDTPG~~ 81 (247)
T 3lxw_A 19 ESTRRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGSRRWD-----------------KCHVEVVDTPDIF 81 (247)
T ss_dssp -CEEEEEEESSTTSSHHHHHHHHHTSCCC---------CCSCEEEEEEET-----------------TEEEEEEECCSCS
T ss_pred CCceEEEEECCCCCcHHHHHHHHhCCCCccccCCCCCccccEEEEEEEEC-----------------CcEEEEEECCCCC
Confidence 34589999999999999999999976665544333 48888888887766 3679999999997
Q ss_pred CCCCcC-cchhhhHhhHH----HhcccceEEeecCCC---------------------ccEEEeCCcccCCcchHHHHhh
Q 018241 133 KGASQG-EGLGNKFLSHI----REVDSILQVVRCFED---------------------NDIVHVNGKVDPKSDVDVINLE 186 (359)
Q Consensus 133 ~~~~~~-~~~~~~~l~~i----~~aD~il~Vvd~~~~---------------------~~v~~v~nk~d~~~~~~~i~~e 186 (359)
+..... +.+...+...+ +.+|++++|+|+... .+++.+.||.|.... .+.+.
T Consensus 82 ~~~~~~~~~~~~~i~~~~~~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~~~~~~~~~iilv~nK~Dl~~~--~~~~~ 159 (247)
T 3lxw_A 82 SSQVSKTDPGCEERGHCYLLSAPGPHALLLVTQLGRFTAQDQQAVRQVRDMFGEDVLKWMVIVFTRKEDLAGG--SLHDY 159 (247)
T ss_dssp STTHHHHSTTSHHHHHHHHHHTTCCSEEEEEEETTBCCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTTC--CHHHH
T ss_pred CCCCCcHHHHHHHHHHHHHhcCCCCCEEEEEEeCCCCCHHHHHHHHHHHHHhChhhhccEEEEEEchHhcCCC--CHHHH
Confidence 554322 33333343333 899999999998651 247788899986532 11111
Q ss_pred hhhccHHHHHHHHHHHhhhcccccc---chhhHHHHHHHHHHHHHHhcC-CCCCCC
Q 018241 187 LVFSDLDQIEKRMEKLKKGKAKDSQ---SKLKEDAEKAALEKIQQALMD-GKPARS 238 (359)
Q Consensus 187 l~~~d~~~l~~~~~~~~~~~~~~~~---Sa~~~~~~~~ll~~i~~~L~~-~~~~~~ 238 (359)
+...+.+.+................ ++..+.++.+|++.+.+.+++ +..+++
T Consensus 160 l~~~~~~~l~~l~~~~g~~~~~~~~~~~~~~~~~~v~~Ll~~i~~~~~~~~~~~y~ 215 (247)
T 3lxw_A 160 VSNTENRALRELVAECGGRVCAFDNRATGREQEAQVEQLLGMVEGLVLEHKGAHYS 215 (247)
T ss_dssp HHHCCCHHHHHHHHHTTTCEEECCTTCCHHHHHHHHHHHHHHHHHHHHHTTTCCCC
T ss_pred HhhcccHHHHHHHHHcCCeEEEEeCCCCccccHHHHHHHHHHHHHHHHHcCCCCCC
Confidence 1111112233333332222111122 234478899999999999985 555554
No 16
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.70 E-value=8.7e-17 Score=148.27 Aligned_cols=143 Identities=21% Similarity=0.296 Sum_probs=104.6
Q ss_pred cEEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCCcCCCC
Q 018241 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGAS 136 (359)
Q Consensus 57 ~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~~~~~ 136 (359)
++|+++|.||||||||||+|+|. ...++++|++|.+...+.+.+++ ..+.+|||||+....+
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~-~~~v~~~pg~Tv~~~~~~~~~~~-----------------~~~~lvDtpG~~~~~~ 63 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNA-NQRVGNWPGVTVEKKTGEFLLGE-----------------HLIEITDLPGVYSLVA 63 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTT-SEEEEECTTSSSEEEEEEEEETT-----------------EEEEEEECCCCSSCC-
T ss_pred CEEEEECCCCCCHHHHHHHHHCC-CCCccCCCCceEEEEEEEEEECC-----------------eEEEEEeCCCcccccc
Confidence 58999999999999999999954 57789999999999999888774 5799999999976653
Q ss_pred c------CcchhhhHhhHHHhcccceEEeecCC--------------CccEEEeCCcccCCcchHHHHhhhhhccHHHHH
Q 018241 137 Q------GEGLGNKFLSHIREVDSILQVVRCFE--------------DNDIVHVNGKVDPKSDVDVINLELVFSDLDQIE 196 (359)
Q Consensus 137 ~------~~~~~~~~l~~i~~aD~il~Vvd~~~--------------~~~v~~v~nk~d~~~~~~~i~~el~~~d~~~l~ 196 (359)
. .+.+...++.. +.+|++++|+|+++ +.+++.+.||+|...... ...+.+.+.
T Consensus 64 ~~~~~~~~e~i~~~~~~~-~~~d~vi~VvDas~~~~~~~l~~~l~~~~~pvilv~NK~Dl~~~~~------~~~~~~~l~ 136 (256)
T 3iby_A 64 NAEGISQDEQIAAQSVID-LEYDCIINVIDACHLERHLYLTSQLFELGKPVVVALNMMDIAEHRG------ISIDTEKLE 136 (256)
T ss_dssp -----CHHHHHHHHHHHH-SCCSEEEEEEEGGGHHHHHHHHHHHTTSCSCEEEEEECHHHHHHTT------CEECHHHHH
T ss_pred cccCCCHHHHHHHHHHhh-CCCCEEEEEeeCCCchhHHHHHHHHHHcCCCEEEEEEChhcCCcCC------cHHHHHHHH
Confidence 1 22233333322 78999999999987 357899999999653211 112222233
Q ss_pred HHHHHHhhhccccccchhhHHHHHHHHHHHHHH
Q 018241 197 KRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQA 229 (359)
Q Consensus 197 ~~~~~~~~~~~~~~~Sa~~~~~~~~ll~~i~~~ 229 (359)
+.+ . ....++||+.+.++.++++.+.+.
T Consensus 137 ~~l---g--~~vi~~SA~~g~gi~el~~~i~~~ 164 (256)
T 3iby_A 137 SLL---G--CSVIPIQAHKNIGIPALQQSLLHC 164 (256)
T ss_dssp HHH---C--SCEEECBGGGTBSHHHHHHHHHTC
T ss_pred HHc---C--CCEEEEECCCCCCHHHHHHHHHhh
Confidence 322 1 122578999999999999999887
No 17
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.70 E-value=2.4e-17 Score=142.20 Aligned_cols=143 Identities=22% Similarity=0.267 Sum_probs=102.6
Q ss_pred CCcEEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCCcCC
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~~~ 134 (359)
.+.+|+|+|.||||||||+|+|++.....++++|++|++...+.+.+.+ .++.+|||||+.+.
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~-----------------~~~~l~Dt~G~~~~ 65 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDG-----------------MPLHIIDTAGLREA 65 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETT-----------------EEEEEEECCCCSCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEECC-----------------eEEEEEECCCcccc
Confidence 3579999999999999999999977666788899999998888887763 46899999999754
Q ss_pred CCcCcch-hhhHhhHHHhcccceEEeecCCC-------------------ccEEEeCCcccCCcchHHHHhhhhhccHHH
Q 018241 135 ASQGEGL-GNKFLSHIREVDSILQVVRCFED-------------------NDIVHVNGKVDPKSDVDVINLELVFSDLDQ 194 (359)
Q Consensus 135 ~~~~~~~-~~~~l~~i~~aD~il~Vvd~~~~-------------------~~v~~v~nk~d~~~~~~~i~~el~~~d~~~ 194 (359)
....+.. ....+..++.+|++++|+|+++. .+++.+.||+|...+. ..+...
T Consensus 66 ~~~~~~~~~~~~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~------~~~~~~-- 137 (172)
T 2gj8_A 66 SDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADITGET------LGMSEV-- 137 (172)
T ss_dssp SSHHHHHHHHHHHHHHHTCSEEEEEEETTTCCCCSHHHHCHHHHHHSCTTCCEEEEEECHHHHCCC------CEEEEE--
T ss_pred hhHHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHhcccCCCEEEEEECccCCcch------hhhhhc--
Confidence 3321111 12244678999999999998762 2467888888853211 001110
Q ss_pred HHHHHHHHhhhccccccchhhHHHHHHHHHHHHHHhc
Q 018241 195 IEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALM 231 (359)
Q Consensus 195 l~~~~~~~~~~~~~~~~Sa~~~~~~~~ll~~i~~~L~ 231 (359)
.......+||+++.++.++++.+.+.+.
T Consensus 138 ---------~~~~~~~~SA~~g~gv~~l~~~l~~~~~ 165 (172)
T 2gj8_A 138 ---------NGHALIRLSARTGEGVDVLRNHLKQSMG 165 (172)
T ss_dssp ---------TTEEEEECCTTTCTTHHHHHHHHHHHC-
T ss_pred ---------cCCceEEEeCCCCCCHHHHHHHHHHHhh
Confidence 0011146899999999999999988874
No 18
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.69 E-value=3.2e-17 Score=146.46 Aligned_cols=156 Identities=21% Similarity=0.181 Sum_probs=105.4
Q ss_pred CCcEEEEEecCCCChhHHHHHHHhcc-ccccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCCcC
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVVENG-KAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVK 133 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~~~~-~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~~ 133 (359)
..++|+++|.+|||||||+|+|++.. .+.+++.+++|.+.....+...+ +..+.||||||+..
T Consensus 28 ~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~----------------~~~~~l~DtpG~~~ 91 (223)
T 4dhe_A 28 VQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAA----------------EPVAHLVDLPGYGY 91 (223)
T ss_dssp CSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCTT----------------SCSEEEEECCCCCS
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecCCC----------------CCcEEEEcCCCCCc
Confidence 45899999999999999999999776 46888999999877655543111 35699999999865
Q ss_pred CCCcCc------chhhhHhhHHHhcccceEEeecCCC----------------ccEEEeCCcccCCcchHHHHhhhhhcc
Q 018241 134 GASQGE------GLGNKFLSHIREVDSILQVVRCFED----------------NDIVHVNGKVDPKSDVDVINLELVFSD 191 (359)
Q Consensus 134 ~~~~~~------~~~~~~l~~i~~aD~il~Vvd~~~~----------------~~v~~v~nk~d~~~~~~~i~~el~~~d 191 (359)
...... .+...++.....+|++++|+|+.+. .+++.+.||+|..........
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~Dl~~~~~~~~~------ 165 (223)
T 4dhe_A 92 AEVPGAAKAHWEQLLSSYLQTRPQLCGMILMMDARRPLTELDRRMIEWFAPTGKPIHSLLTKCDKLTRQESINA------ 165 (223)
T ss_dssp SCCCSTHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHGGGCCCEEEEEECGGGSCHHHHHHH------
T ss_pred ccCChhhHHHHHHHHHHHHhcCcCcCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEEEEEeccccCChhhHHHH------
Confidence 432211 1223344444558899999999762 368899999998754322111
Q ss_pred HHHHHHHHHHHh-----hhccccccchhhHHHHHHHHHHHHHHhcC
Q 018241 192 LDQIEKRMEKLK-----KGKAKDSQSKLKEDAEKAALEKIQQALMD 232 (359)
Q Consensus 192 ~~~l~~~~~~~~-----~~~~~~~~Sa~~~~~~~~ll~~i~~~L~~ 232 (359)
.+.+.+.+.... .......+||+.+.++.++++.+.+.++.
T Consensus 166 ~~~~~~~l~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~~~~ 211 (223)
T 4dhe_A 166 LRATQKSLDAYRDAGYAGKLTVQLFSALKRTGLDDAHALIESWLRP 211 (223)
T ss_dssp HHHHHHHHHHHHHHTCCSCEEEEEEBTTTTBSHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHhhhhcccCCCCeEEEeecCCCcCHHHHHHHHHHhcCc
Confidence 111222222221 11112578999999999999999999964
No 19
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.69 E-value=1.3e-17 Score=166.56 Aligned_cols=153 Identities=21% Similarity=0.229 Sum_probs=89.0
Q ss_pred hhccccCCcEEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEec
Q 018241 49 SASKISMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDI 128 (359)
Q Consensus 49 ~~~~~~~~~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDt 128 (359)
+++....+++|+|+|.||||||||+|+|++...+.++++|+||++.....+.+. +..+.||||
T Consensus 226 ~~~~~r~~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~~-----------------g~~l~liDT 288 (476)
T 3gee_A 226 HGRIVSEGVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHD-----------------KTMFRLTDT 288 (476)
T ss_dssp HHHHHHHCEEEEEECCTTSSHHHHHHHCC------------------CEEEEET-----------------TEEEEEEC-
T ss_pred hhHhhcCCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEEC-----------------CeEEEEEEC
Confidence 445556779999999999999999999997777889999999999988888776 357999999
Q ss_pred CCCcCCCCcCcchh-hhHhhHHHhcccceEEeecCCC------------------ccEEEeCCcccCCcchHHHHhhhhh
Q 018241 129 AGLVKGASQGEGLG-NKFLSHIREVDSILQVVRCFED------------------NDIVHVNGKVDPKSDVDVINLELVF 189 (359)
Q Consensus 129 pG~~~~~~~~~~~~-~~~l~~i~~aD~il~Vvd~~~~------------------~~v~~v~nk~d~~~~~~~i~~el~~ 189 (359)
||+.+.....+.++ ..++..++.||++++|+|+++. .+++.+.||+|.......-.
T Consensus 289 ~G~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l~~~piIvV~NK~Dl~~~~~~~~----- 363 (476)
T 3gee_A 289 AGLREAGEEIEHEGIRRSRMKMAEADLILYLLDLGTERLDDELTEIRELKAAHPAAKFLTVANKLDRAANADALI----- 363 (476)
T ss_dssp -------------------CCCSSCSEEEEEEETTTCSSGGGHHHHHHHHHHCTTSEEEEEEECTTSCTTTHHHH-----
T ss_pred CCCCcchhHHHHHHHHHHHhhcccCCEEEEEEECCCCcchhhhHHHHHHHHhcCCCCEEEEEECcCCCCccchhH-----
Confidence 99976543322221 3456678999999999999864 35788999999775432210
Q ss_pred ccHHHHHHHHHHHhhhccccccchhhHHHHHHHHHHHHHHhc
Q 018241 190 SDLDQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALM 231 (359)
Q Consensus 190 ~d~~~l~~~~~~~~~~~~~~~~Sa~~~~~~~~ll~~i~~~L~ 231 (359)
+.+.+. .. .....+||+++.++.++++.+.+.+.
T Consensus 364 ---~~l~~~--~~---~~~i~vSAktg~GI~eL~~~i~~~~~ 397 (476)
T 3gee_A 364 ---RAIADG--TG---TEVIGISALNGDGIDTLKQHMGDLVK 397 (476)
T ss_dssp ---HHHHHH--HT---SCEEECBTTTTBSHHHHHHHHTHHHH
T ss_pred ---HHHHhc--CC---CceEEEEECCCCCHHHHHHHHHHHHh
Confidence 111111 01 12257899999999999999999987
No 20
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.68 E-value=2.4e-17 Score=163.25 Aligned_cols=145 Identities=20% Similarity=0.173 Sum_probs=89.4
Q ss_pred cEEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCCcCCCC
Q 018241 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGAS 136 (359)
Q Consensus 57 ~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~~~~~ 136 (359)
++|+|||+||||||||||+|+|...+.+++.||+|++...+.+.+. +.++.+|||||+.....
T Consensus 4 ~~V~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~T~d~~~~~~~~~-----------------~~~~~l~DT~G~~~~~~ 66 (436)
T 2hjg_A 4 PVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWL-----------------NYDFNLIDTGGIDIGDE 66 (436)
T ss_dssp CEEEEECSTTSSHHHHHHHHEEEECC-----------CEEEECTTC-----------------SSCCEEEC---------
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeecCCCCCccceEEEEEEEC-----------------CceEEEEECCCCCCcch
Confidence 6999999999999999999998888889999999999988876554 35699999999964322
Q ss_pred c-CcchhhhHhhHHHhcccceEEeecCCC----------------ccEEEeCCcccCCcchHHHHhhhhhccHHHHHHHH
Q 018241 137 Q-GEGLGNKFLSHIREVDSILQVVRCFED----------------NDIVHVNGKVDPKSDVDVINLELVFSDLDQIEKRM 199 (359)
Q Consensus 137 ~-~~~~~~~~l~~i~~aD~il~Vvd~~~~----------------~~v~~v~nk~d~~~~~~~i~~el~~~d~~~l~~~~ 199 (359)
. .+.+...+..++++||++++|+|+++. .+++.+.||+|....... ..+...
T Consensus 67 ~~~~~~~~~~~~~~~~ad~il~vvD~~~~~~~~d~~~~~~l~~~~~pvilv~NK~D~~~~~~~------~~~~~~----- 135 (436)
T 2hjg_A 67 PFLAQIRQQAEIAMDEADVIIFMVNGREGVTAADEEVAKILYRTKKPVVLAVNKLDNTEMRAN------IYDFYS----- 135 (436)
T ss_dssp CHHHHHHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHTTCCSCEEEEEECCCC-----C------CCSSGG-----
T ss_pred hHHHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECccCccchhh------HHHHHH-----
Confidence 1 123445567788999999999999762 368899999997643211 111000
Q ss_pred HHHhhhccccccchhhHHHHHHHHHHHHHHhcC
Q 018241 200 EKLKKGKAKDSQSKLKEDAEKAALEKIQQALMD 232 (359)
Q Consensus 200 ~~~~~~~~~~~~Sa~~~~~~~~ll~~i~~~L~~ 232 (359)
+ .......+||+.+.++.++++.+.+.+++
T Consensus 136 --l-g~~~~~~iSA~~g~gv~~L~~~i~~~l~~ 165 (436)
T 2hjg_A 136 --L-GFGEPYPISGTHGLGLGDLLDAVAEHFKN 165 (436)
T ss_dssp --G-SSCCCEECBTTTTBTHHHHHHHHHHTGGG
T ss_pred --c-CCCCeEEEeCcCCCChHHHHHHHHHhcCc
Confidence 0 00011468999999999999999888863
No 21
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.67 E-value=5e-16 Score=143.31 Aligned_cols=147 Identities=20% Similarity=0.341 Sum_probs=105.6
Q ss_pred CcEEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCCcCCC
Q 018241 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA 135 (359)
Q Consensus 56 ~~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~~~~ 135 (359)
.++|+++|.||||||||||+|+|. ...++++|++|.+...+.+... +..+.+|||||+....
T Consensus 5 ~~kI~lvG~~nvGKTsL~n~l~g~-~~~~~~~pg~tv~~~~~~~~~~-----------------~~~~~l~DtpG~~~~~ 66 (258)
T 3a1s_A 5 MVKVALAGCPNVGKTSLFNALTGT-KQYVANWPGVTVEKKEGVFTYK-----------------GYTINLIDLPGTYSLG 66 (258)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTT-CEEEEECTTSCCEEEEEEEEET-----------------TEEEEEEECCCCSSCC
T ss_pred ceEEEEECCCCCCHHHHHHHHHCC-CCcccCCCCceEEEEEEEEEEC-----------------CeEEEEEECCCcCccC
Confidence 479999999999999999999954 4558899999999888888765 3579999999997654
Q ss_pred Cc--CcchhhhHhhHHHhcccceEEeecCC--------------CccEEEeCCcccCCcchHHHHhhhhhccHHHHHHHH
Q 018241 136 SQ--GEGLGNKFLSHIREVDSILQVVRCFE--------------DNDIVHVNGKVDPKSDVDVINLELVFSDLDQIEKRM 199 (359)
Q Consensus 136 ~~--~~~~~~~~l~~i~~aD~il~Vvd~~~--------------~~~v~~v~nk~d~~~~~~~i~~el~~~d~~~l~~~~ 199 (359)
.. .+.+...++.. ..+|++++|+|+++ +.+++.+.||+|...... . ..+...+.+.+
T Consensus 67 ~~~~~e~v~~~~~~~-~~~d~ii~V~D~t~~~~~~~~~~~l~~~~~pvilv~NK~Dl~~~~~-----i-~~~~~~l~~~l 139 (258)
T 3a1s_A 67 YSSIDEKIARDYLLK-GDADLVILVADSVNPEQSLYLLLEILEMEKKVILAMTAIDEAKKTG-----M-KIDRYELQKHL 139 (258)
T ss_dssp SSSHHHHHHHHHHHH-SCCSEEEEEEETTSCHHHHHHHHHHHTTTCCEEEEEECHHHHHHTT-----C-CBCHHHHHHHH
T ss_pred CCCHHHHHHHHHHhh-cCCCEEEEEeCCCchhhHHHHHHHHHhcCCCEEEEEECcCCCCccc-----h-HHHHHHHHHHc
Confidence 32 12232333322 57999999999987 346889999999542211 1 12223333322
Q ss_pred HHHhhhccccccchhhHHHHHHHHHHHHHHhcC
Q 018241 200 EKLKKGKAKDSQSKLKEDAEKAALEKIQQALMD 232 (359)
Q Consensus 200 ~~~~~~~~~~~~Sa~~~~~~~~ll~~i~~~L~~ 232 (359)
. .....+||+.+.++.++++.+.+.+..
T Consensus 140 g-----~~vi~~SA~~g~gi~el~~~i~~~~~~ 167 (258)
T 3a1s_A 140 G-----IPVVFTSSVTGEGLEELKEKIVEYAQK 167 (258)
T ss_dssp C-----SCEEECCTTTCTTHHHHHHHHHHHHHS
T ss_pred C-----CCEEEEEeeCCcCHHHHHHHHHHHhhc
Confidence 1 122578999999999999999988753
No 22
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.67 E-value=1.7e-16 Score=133.68 Aligned_cols=144 Identities=26% Similarity=0.291 Sum_probs=96.4
Q ss_pred cEEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCCcCCCC
Q 018241 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGAS 136 (359)
Q Consensus 57 ~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~~~~~ 136 (359)
++|+++|.+|||||||+|+|++.....+++.+++|.+.....+...+ ..+.+|||||......
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~l~Dt~G~~~~~~ 64 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDR-----------------GRFLLVDTGGLWSGDK 64 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEETT-----------------EEEEEEECGGGCSSSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEeCC-----------------ceEEEEECCCCCCccc
Confidence 58999999999999999999977666678889999888877776653 4699999999976443
Q ss_pred cCcchhhhHhhHHHhcccceEEeecCCC----------------ccEEEeCCcccCCcchHHHHhhhhhccHHHHHHHHH
Q 018241 137 QGEGLGNKFLSHIREVDSILQVVRCFED----------------NDIVHVNGKVDPKSDVDVINLELVFSDLDQIEKRME 200 (359)
Q Consensus 137 ~~~~~~~~~l~~i~~aD~il~Vvd~~~~----------------~~v~~v~nk~d~~~~~~~i~~el~~~d~~~l~~~~~ 200 (359)
....+...+...++.+|++++|+|+++. .+++.+.||+|...+.+.+. .+ .
T Consensus 65 ~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~------~~------~- 131 (161)
T 2dyk_A 65 WEKKIQEKVDRALEDAEVVLFAVDGRAELTQADYEVAEYLRRKGKPVILVATKVDDPKHELYLG------PL------Y- 131 (161)
T ss_dssp CCHHHHHHHHHHTTTCSEEEEEEESSSCCCHHHHHHHHHHHHHTCCEEEEEECCCSGGGGGGCG------GG------G-
T ss_pred hHHHHHHHHHHHHHhCCEEEEEEECCCcccHhHHHHHHHHHhcCCCEEEEEECcccccchHhHH------HH------H-
Confidence 2222334556677899999999999872 36889999999765421111 10 0
Q ss_pred HHhhhccccccchhhHHHHHHHHHHHHHHhc
Q 018241 201 KLKKGKAKDSQSKLKEDAEKAALEKIQQALM 231 (359)
Q Consensus 201 ~~~~~~~~~~~Sa~~~~~~~~ll~~i~~~L~ 231 (359)
... ......+||+.+.++.++++.+.+.+|
T Consensus 132 ~~~-~~~~~~~Sa~~~~gv~~l~~~l~~~l~ 161 (161)
T 2dyk_A 132 GLG-FGDPIPTSSEHARGLEELLEAIWERLP 161 (161)
T ss_dssp GGS-SCSCEECBTTTTBSHHHHHHHHHHHCC
T ss_pred hCC-CCCeEEEecccCCChHHHHHHHHHhCc
Confidence 010 001257899999999999999888763
No 23
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.66 E-value=3.5e-16 Score=145.47 Aligned_cols=146 Identities=21% Similarity=0.323 Sum_probs=102.8
Q ss_pred CcEEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCCcCCC
Q 018241 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA 135 (359)
Q Consensus 56 ~~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~~~~ 135 (359)
.++|+++|.||||||||||+|+| ....++++||+|.+...+.+.. + ..+.+|||||+....
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~g-~~~~v~~~pg~tv~~~~~~~~~-~-----------------~~l~l~DtpG~~~~~ 63 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLITG-HNQRVGNWPGVTVERKSGLVKK-N-----------------KDLEIQDLPGIYSMS 63 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHC-CCCCCCSSSCCCCSCEEEECTT-C-----------------TTEEEEECCCCSCSS
T ss_pred ceEEEEECCCCCCHHHHHHHHHC-CCCcccCCCCCcEEEEEEEEec-C-----------------CeEEEEECCCcCccC
Confidence 47999999999999999999994 4567889999999888776533 2 459999999997654
Q ss_pred Cc--CcchhhhHhhHHHhcccceEEeecCC--------------CccEEEeCCcccCCcchHHHHhhhhhccHHHHHHHH
Q 018241 136 SQ--GEGLGNKFLSHIREVDSILQVVRCFE--------------DNDIVHVNGKVDPKSDVDVINLELVFSDLDQIEKRM 199 (359)
Q Consensus 136 ~~--~~~~~~~~l~~i~~aD~il~Vvd~~~--------------~~~v~~v~nk~d~~~~~~~i~~el~~~d~~~l~~~~ 199 (359)
.. .+.+...++.. ..+|++++|+|+++ +.+++.+.||+|...... ...+...+.+.+
T Consensus 64 ~~~~~e~v~~~~~~~-~~~d~vi~V~D~t~~e~~~~~~~~l~~~~~p~ilv~NK~Dl~~~~~------~~~~~~~l~~~l 136 (272)
T 3b1v_A 64 PYSPEAKVARDYLLS-QRADSILNVVDATNLERNLYLTTQLIETGIPVTIALNMIDVLDGQG------KKINVDKLSYHL 136 (272)
T ss_dssp CSSHHHHHHHHHHHT-TCCSEEEEEEEGGGHHHHHHHHHHHHHTCSCEEEEEECHHHHHHTT------CCCCHHHHHHHH
T ss_pred CCChHHHHHHHHHhc-CCCCEEEEEecCCchHhHHHHHHHHHhcCCCEEEEEEChhhCCcCC------cHHHHHHHHHHc
Confidence 32 12233333322 36999999999976 357889999998542111 112222233322
Q ss_pred HHHhhhccccccchhhHHHHHHHHHHHHHHhcC
Q 018241 200 EKLKKGKAKDSQSKLKEDAEKAALEKIQQALMD 232 (359)
Q Consensus 200 ~~~~~~~~~~~~Sa~~~~~~~~ll~~i~~~L~~ 232 (359)
. .....+||+.+.++.++++.+.+.+..
T Consensus 137 g-----~~vi~~SA~~g~gi~el~~~i~~~~~~ 164 (272)
T 3b1v_A 137 G-----VPVVATSALKQTGVDQVVKKAAHTTTS 164 (272)
T ss_dssp T-----SCEEECBTTTTBSHHHHHHHHHHSCTT
T ss_pred C-----CCEEEEEccCCCCHHHHHHHHHHHHhh
Confidence 1 122578999999999999999988754
No 24
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.66 E-value=1.3e-15 Score=139.93 Aligned_cols=165 Identities=15% Similarity=0.088 Sum_probs=108.7
Q ss_pred CCcEEEEEecCCCChhHHHHHHHhccccccCCCCc-eeccceeEEEEeCCCccchhccccccccccCceEEEEecCCCcC
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPF-CTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVK 133 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~-tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~~ 133 (359)
..++|+|+|.||||||||+|+|++......+..|. +|++...+.+... +.++.||||||+.+
T Consensus 21 ~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-----------------~~~i~iiDTpG~~~ 83 (260)
T 2xtp_A 21 SELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWG-----------------NREIVIIDTPDMFS 83 (260)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEET-----------------TEEEEEEECCGGGG
T ss_pred CceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeC-----------------CCEEEEEECcCCCC
Confidence 45899999999999999999999766666666666 7888777777665 36799999999987
Q ss_pred CCCcCcch----hhhHhhHHHhcccceEEeecCCC--------------------ccEEEeCC-cccCCcchHHHHhhhh
Q 018241 134 GASQGEGL----GNKFLSHIREVDSILQVVRCFED--------------------NDIVHVNG-KVDPKSDVDVINLELV 188 (359)
Q Consensus 134 ~~~~~~~~----~~~~l~~i~~aD~il~Vvd~~~~--------------------~~v~~v~n-k~d~~~~~~~i~~el~ 188 (359)
.......+ ...+...++.+|++++|+|+..- .+.+.+.| |+|.... .+...+.
T Consensus 84 ~~~~~~~~~~~i~~~~~~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~~~~~~~~~i~vv~nK~Dl~~~--~~~~~i~ 161 (260)
T 2xtp_A 84 WKDHCEALYKEVQRCYLLSAPGPHVLLLVTQLGRYTSQDQQAAQRVKEIFGEDAMGHTIVLFTHKEDLNGG--SLMDYMH 161 (260)
T ss_dssp SSCCCHHHHHHHHHHHHHHTTCCSEEEEEEETTCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTTC--CHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCcEEEEEEeCCCCCHHHHHHHHHHHHHhCchhhccEEEEEEcccccCCc--cHHHHHH
Confidence 65432222 23334467889999999998651 13455555 9997632 1111111
Q ss_pred hccHHHHHHHHHHHhhhc---cccccchhhHHHHHHHHHHHHHHhcCCC-CCCC
Q 018241 189 FSDLDQIEKRMEKLKKGK---AKDSQSKLKEDAEKAALEKIQQALMDGK-PARS 238 (359)
Q Consensus 189 ~~d~~~l~~~~~~~~~~~---~~~~~Sa~~~~~~~~ll~~i~~~L~~~~-~~~~ 238 (359)
......+......+.... ...++||+.+.++.++++.+.+.++.+. ++++
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gv~~l~~~i~~~~~~~~~~~~~ 215 (260)
T 2xtp_A 162 DSDNKALSKLVAACGGRICAFNNRAEGSNQDDQVKELMDCIEDLLMEKNGDHYT 215 (260)
T ss_dssp HCCCHHHHHHHHHTTTCEEECCTTCCHHHHHHHHHHHHHHHHHHHHHTTTCCCC
T ss_pred hcchHHHHHHHHHhCCeEEEecCcccccccHHHHHHHHHHHHHHHHhCCCCcCC
Confidence 111111222222222211 1146799999999999999999998765 4443
No 25
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.65 E-value=8.8e-17 Score=159.19 Aligned_cols=156 Identities=21% Similarity=0.182 Sum_probs=102.0
Q ss_pred CCcEEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCCcCC
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~~~ 134 (359)
..++|+++|.||||||||+|+|++.....++++|++|++.....+.+++ ..+.+|||||+.+.
T Consensus 174 ~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~~~~~~~~-----------------~~~~l~DT~G~~~~ 236 (436)
T 2hjg_A 174 EVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQ-----------------QEFVIVDTAGMRKK 236 (436)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHTSTTEEEC---------CCEEEEETT-----------------EEEEETTHHHHTCB
T ss_pred cCcEEEEEcCCCCCHHHHHHHHhCCCceeecCCCCceeeeeEEEEEECC-----------------eEEEEEECCCcCcC
Confidence 4589999999999999999999987777889999999999888887763 46999999999755
Q ss_pred CCcCcchh----hhHhhHHHhcccceEEeecCCC----------------ccEEEeCCcccCCcchHHHHhhhhhccHHH
Q 018241 135 ASQGEGLG----NKFLSHIREVDSILQVVRCFED----------------NDIVHVNGKVDPKSDVDVINLELVFSDLDQ 194 (359)
Q Consensus 135 ~~~~~~~~----~~~l~~i~~aD~il~Vvd~~~~----------------~~v~~v~nk~d~~~~~~~i~~el~~~d~~~ 194 (359)
....+.+. ...+.+++.||++++|+|+++. .+++.+.||+|..........+. .+.
T Consensus 237 ~~~~~~~e~~~~~~~~~~~~~ad~~llv~D~~~~~s~~~~~~~~~~~~~~~~iiiv~NK~Dl~~~~~~~~~~~----~~~ 312 (436)
T 2hjg_A 237 GKVYETTEKYSVLRALKAIDRSEVVAVVLDGEEGIIEQDKRIAGYAHEAGKAVVIVVNKWDAVDKDESTMKEF----EEN 312 (436)
T ss_dssp TTBCCCCSHHHHHHHHHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHHTTCEEEEEEECGGGSCCCTTHHHHH----HHH
T ss_pred ccccchHHHHHHHHHHHHHHhCCEEEEEEcCCcCCcHHHHHHHHHHHHcCCcEEEEEECccCCCcchHHHHHH----HHH
Confidence 43222221 1234678999999999999873 35889999999775322111110 011
Q ss_pred HHHHHHHHhhhccccccchhhHHHHHHHHHHHHHHhcC
Q 018241 195 IEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMD 232 (359)
Q Consensus 195 l~~~~~~~~~~~~~~~~Sa~~~~~~~~ll~~i~~~L~~ 232 (359)
+.+.+.... ......+||+++.++.++++.+.+.+..
T Consensus 313 ~~~~l~~~~-~~~~~~~SA~tg~~v~~l~~~i~~~~~~ 349 (436)
T 2hjg_A 313 IRDHFQFLD-YAPILFMSALTKKRIHTLMPAIIKASEN 349 (436)
T ss_dssp HHHHCGGGT-TSCEEECCTTTCTTGGGHHHHHHHHHHH
T ss_pred HHHhcccCC-CCCEEEEecccCCCHHHHHHHHHHHHHH
Confidence 111111110 1111568999999999999999888864
No 26
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.65 E-value=3.2e-17 Score=163.23 Aligned_cols=154 Identities=20% Similarity=0.254 Sum_probs=104.5
Q ss_pred hhccccCCcEEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEec
Q 018241 49 SASKISMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDI 128 (359)
Q Consensus 49 ~~~~~~~~~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDt 128 (359)
.++....+++|+|+|+||||||||+|+|++...+.++++|++|++.....+.++ +..+.+|||
T Consensus 217 ~~~~~r~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~-----------------g~~v~liDT 279 (462)
T 3geh_A 217 KGELLRTGLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVG-----------------GIPVQVLDT 279 (462)
T ss_dssp HHHHHHHCEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEET-----------------TEEEEECC-
T ss_pred hhhhhcCCCEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEEC-----------------CEEEEEEEC
Confidence 445555678999999999999999999998888889999999999887777766 356999999
Q ss_pred CCCcCCCCcCcchh-hhHhhHHHhcccceEEeecCCC--------------ccEEEeCCcccCCcchHHHHhhhhhccHH
Q 018241 129 AGLVKGASQGEGLG-NKFLSHIREVDSILQVVRCFED--------------NDIVHVNGKVDPKSDVDVINLELVFSDLD 193 (359)
Q Consensus 129 pG~~~~~~~~~~~~-~~~l~~i~~aD~il~Vvd~~~~--------------~~v~~v~nk~d~~~~~~~i~~el~~~d~~ 193 (359)
||+.+.....+.++ ...+..++.+|++++|+|+++. .+++.+.||+|....... . + ...+
T Consensus 280 ~G~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~~~~~~~i~~~l~~~piivV~NK~Dl~~~~~~-~-~--~~~~- 354 (462)
T 3geh_A 280 AGIRETSDQVEKIGVERSRQAANTADLVLLTIDAATGWTTGDQEIYEQVKHRPLILVMNKIDLVEKQLI-T-S--LEYP- 354 (462)
T ss_dssp -------------------CCCCSCSEEEEEEETTTCSCHHHHHHHHHHTTSCEEEEEECTTSSCGGGS-T-T--CCCC-
T ss_pred CccccchhHHHHHHHHHHhhhhhcCCEEEEEeccCCCCCHHHHHHHHhccCCcEEEEEECCCCCcchhh-H-H--HHHh-
Confidence 99976443322221 3456677899999999999763 368899999997654321 0 0 0010
Q ss_pred HHHHHHHHHhhhccccccchhhHHHHHHHHHHHHHHhcCC
Q 018241 194 QIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMDG 233 (359)
Q Consensus 194 ~l~~~~~~~~~~~~~~~~Sa~~~~~~~~ll~~i~~~L~~~ 233 (359)
........+||+++.++.++++.+.+.+...
T Consensus 355 ---------~~~~~~i~iSAktg~Gi~eL~~~i~~~~~~~ 385 (462)
T 3geh_A 355 ---------ENITQIVHTAAAQKQGIDSLETAILEIVQTG 385 (462)
T ss_dssp ---------TTCCCEEEEBTTTTBSHHHHHHHHHHHHTTS
T ss_pred ---------ccCCcEEEEECCCCCCHHHHHHHHHHHHhcc
Confidence 0011115789999999999999999998654
No 27
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.64 E-value=1.6e-15 Score=129.55 Aligned_cols=145 Identities=22% Similarity=0.317 Sum_probs=95.5
Q ss_pred cEEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCCcCCCC
Q 018241 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGAS 136 (359)
Q Consensus 57 ~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~~~~~ 136 (359)
.+|+++|.+|||||||+|+|++ ....++++|++|++...+.+.+. +..+.+|||||+.+...
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~-~~~~~~~~~~~t~~~~~~~~~~~-----------------~~~l~i~Dt~G~~~~~~ 65 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTG-ENVYIGNWPGVTVEKKEGEFEYN-----------------GEKFKVVDLPGVYSLTA 65 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC-CSSSCC-----CCCCCEEEEEET-----------------TEEEEEEECCCCSCSSS
T ss_pred cEEEEECCCCCCHHHHHHHHhC-CCeeccCCCCcceeeeEEEEEEC-----------------CcEEEEEECCCcccCCC
Confidence 6899999999999999999994 44556788999988888887765 35699999999976543
Q ss_pred cC--cchhhhHhhHHHhcccceEEeecCC--------------CccEEEeCCcccCCcchHHHHhhhhhccHHHHHHHHH
Q 018241 137 QG--EGLGNKFLSHIREVDSILQVVRCFE--------------DNDIVHVNGKVDPKSDVDVINLELVFSDLDQIEKRME 200 (359)
Q Consensus 137 ~~--~~~~~~~l~~i~~aD~il~Vvd~~~--------------~~~v~~v~nk~d~~~~~~~i~~el~~~d~~~l~~~~~ 200 (359)
.. +.+...++. ..++|++++|+|+++ +.+++.+.||+|...... .. ...+.+.+.+
T Consensus 66 ~~~~~~~~~~~~~-~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~-----~~-~~~~~~~~~~- 137 (165)
T 2wji_A 66 NSIDEIIARDYII-NEKPDLVVNIVDATALERNLYLTLQLMEMGANLLLALNKMDLAKSLG-----IE-IDVDKLEKIL- 137 (165)
T ss_dssp SSHHHHHHHHHHH-HHCCSEEEEEEETTCHHHHHHHHHHHHHTTCCEEEEEECHHHHHHTT-----CC-CCHHHHHHHH-
T ss_pred cchhHHHHHHHHh-cCCCCEEEEEecCCchhHhHHHHHHHHhcCCCEEEEEEchHhccccC-----hh-hHHHHHHHHh-
Confidence 21 112222221 147999999999876 346888999998542111 00 1112222211
Q ss_pred HHhhhccccccchhhHHHHHHHHHHHHHHhc
Q 018241 201 KLKKGKAKDSQSKLKEDAEKAALEKIQQALM 231 (359)
Q Consensus 201 ~~~~~~~~~~~Sa~~~~~~~~ll~~i~~~L~ 231 (359)
. .....+||+++.++.++++.+.+.+.
T Consensus 138 --~--~~~~~~SA~~~~~v~~l~~~l~~~~~ 164 (165)
T 2wji_A 138 --G--VKVVPLSAAKKMGIEELKKAISIAVK 164 (165)
T ss_dssp --T--SCEEECBGGGTBSHHHHHHHHHHHTT
T ss_pred --C--CCEEEEEcCCCCCHHHHHHHHHHHhh
Confidence 1 11256899999999999999887763
No 28
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.63 E-value=1.3e-15 Score=132.40 Aligned_cols=151 Identities=21% Similarity=0.185 Sum_probs=99.0
Q ss_pred CCcEEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCCcCC
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~~~ 134 (359)
..++|+++|.+|||||||+|+|++......++.+++|.+...... +.++.+|||||+...
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~t~~~~~~~~--------------------~~~~~i~Dt~G~~~~ 81 (195)
T 3pqc_A 22 LKGEVAFVGRSNVGKSSLLNALFNRKIAFVSKTPGKTRSINFYLV--------------------NSKYYFVDLPGYGYA 81 (195)
T ss_dssp TTCEEEEEEBTTSSHHHHHHHHHTSCCSCCCSSCCCCCCEEEEEE--------------------TTTEEEEECCCBSSS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcCccccccCCCCCccCeEEEEE--------------------CCcEEEEECCCCccc
Confidence 457999999999999999999998777778888888866554332 235899999997543
Q ss_pred CCcC------cchhhhHhhHHHhcccceEEeecCCC----------------ccEEEeCCcccCCcchHHHHhhhhhccH
Q 018241 135 ASQG------EGLGNKFLSHIREVDSILQVVRCFED----------------NDIVHVNGKVDPKSDVDVINLELVFSDL 192 (359)
Q Consensus 135 ~~~~------~~~~~~~l~~i~~aD~il~Vvd~~~~----------------~~v~~v~nk~d~~~~~~~i~~el~~~d~ 192 (359)
.... ..+...++.....+|++++|+|+.+. .+++.+.||+|...+.+.... .
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~------~ 155 (195)
T 3pqc_A 82 KVSKKERMLWKRLVEDYFKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKSLNIPFTIVLTKMDKVKMSERAKK------L 155 (195)
T ss_dssp CCCHHHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSCGGGHHHH------H
T ss_pred cCChhhHHHHHHHHHHHHhcCcCceEEEEEecCCCCCCHHHHHHHHHHHHcCCCEEEEEEChhcCChHHHHHH------H
Confidence 2210 11222333444455999999998763 468899999997643211000 0
Q ss_pred HHHHHHHHHHhhhccccccchhhHHHHHHHHHHHHHHhcC
Q 018241 193 DQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMD 232 (359)
Q Consensus 193 ~~l~~~~~~~~~~~~~~~~Sa~~~~~~~~ll~~i~~~L~~ 232 (359)
+.+........ ......+||+.+.++.++++.+.+.+++
T Consensus 156 ~~~~~~~~~~~-~~~~~~~Sa~~~~gv~~l~~~l~~~l~~ 194 (195)
T 3pqc_A 156 EEHRKVFSKYG-EYTIIPTSSVTGEGISELLDLISTLLKE 194 (195)
T ss_dssp HHHHHHHHSSC-CSCEEECCTTTCTTHHHHHHHHHHHHC-
T ss_pred HHHHHHHhhcC-CCceEEEecCCCCCHHHHHHHHHHHhhc
Confidence 11111111100 0111568999999999999999988853
No 29
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.63 E-value=3.2e-15 Score=138.58 Aligned_cols=149 Identities=22% Similarity=0.291 Sum_probs=106.5
Q ss_pred CcEEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCCcCCC
Q 018241 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA 135 (359)
Q Consensus 56 ~~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~~~~ 135 (359)
.++|+++|.||||||||+|+|+|.. ..+++.|++|.+...+.+.+.+ ..+.+|||||+....
T Consensus 3 ~~~i~lvG~~g~GKTTL~n~l~g~~-~~~~~~~~~t~~~~~~~~~~~~-----------------~~~~l~DtpG~~~~~ 64 (271)
T 3k53_A 3 LKTVALVGNPNVGKTTIFNALTGLR-QHVGNWPGVTVEKKEGIMEYRE-----------------KEFLVVDLPGIYSLT 64 (271)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHTTC-EEEEECTTSSCEEEEEEEEETT-----------------EEEEEEECCCCSCCC
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCC-cccCCCCCeEEEeeEEEEEECC-----------------ceEEEEeCCCccccc
Confidence 3799999999999999999999554 4888999999999888887763 569999999997654
Q ss_pred CcC--cchhhhHhhHHHhcccceEEeecCC--------------C-ccEEEeCCcccCCcchHHHHhhhhhccHHHHHHH
Q 018241 136 SQG--EGLGNKFLSHIREVDSILQVVRCFE--------------D-NDIVHVNGKVDPKSDVDVINLELVFSDLDQIEKR 198 (359)
Q Consensus 136 ~~~--~~~~~~~l~~i~~aD~il~Vvd~~~--------------~-~~v~~v~nk~d~~~~~~~i~~el~~~d~~~l~~~ 198 (359)
... +.+...++ ...++|++++|+|+++ . .+++.+.||+|...... ...+...+.+.
T Consensus 65 ~~~~~~~~~~~~~-~~~~~d~vi~v~D~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~------~~~~~~~l~~~ 137 (271)
T 3k53_A 65 AHSIDELIARNFI-LDGNADVIVDIVDSTCLMRNLFLTLELFEMEVKNIILVLNKFDLLKKKG------AKIDIKKMRKE 137 (271)
T ss_dssp SSCHHHHHHHHHH-HTTCCSEEEEEEEGGGHHHHHHHHHHHHHTTCCSEEEEEECHHHHHHHT------CCCCHHHHHHH
T ss_pred cCCHHHHHHHHhh-hccCCcEEEEEecCCcchhhHHHHHHHHhcCCCCEEEEEEChhcCcccc------cHHHHHHHHHH
Confidence 421 11222222 1267999999999876 3 67889999999542111 11122222222
Q ss_pred HHHHhhhccccccchhhHHHHHHHHHHHHHHhcCCC
Q 018241 199 MEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMDGK 234 (359)
Q Consensus 199 ~~~~~~~~~~~~~Sa~~~~~~~~ll~~i~~~L~~~~ 234 (359)
+ . ....++||+.+.++.++++.+.+.+....
T Consensus 138 l---g--~~~~~~Sa~~g~gi~~l~~~i~~~~~~~~ 168 (271)
T 3k53_A 138 L---G--VPVIPTNAKKGEGVEELKRMIALMAEGKV 168 (271)
T ss_dssp H---S--SCEEECBGGGTBTHHHHHHHHHHHHHTCC
T ss_pred c---C--CcEEEEEeCCCCCHHHHHHHHHHHHhccc
Confidence 2 1 11257899999999999999999886543
No 30
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.62 E-value=1.4e-15 Score=149.35 Aligned_cols=150 Identities=29% Similarity=0.501 Sum_probs=113.1
Q ss_pred CcEEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCCcCCC
Q 018241 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA 135 (359)
Q Consensus 56 ~~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~~~~ 135 (359)
...|+|||+||||||||+|+|+ .....++++|++|..++.|.+.+++ ...+.++||||+.+..
T Consensus 157 g~~VgLVG~~gAGKSTLL~~Ls-g~~~~i~~~~ftTl~p~~G~V~~~~----------------~~~~~l~DtpGli~~a 219 (416)
T 1udx_A 157 IADVGLVGYPNAGKSSLLAAMT-RAHPKIAPYPFTTLSPNLGVVEVSE----------------EERFTLADIPGIIEGA 219 (416)
T ss_dssp SCSEEEECCGGGCHHHHHHHHC-SSCCEECCCTTCSSCCEEEEEECSS----------------SCEEEEEECCCCCCCG
T ss_pred CCEEEEECCCCCcHHHHHHHHH-cCCccccCcccceecceeeEEEecC----------------cceEEEEeccccccch
Confidence 3569999999999999999999 4555788999999999999987764 2468999999998877
Q ss_pred CcCcchhhhHhhHHHhcccceEEeecCC---------------------CccEEEeCCcccCCcchHHHHhhhhhccHHH
Q 018241 136 SQGEGLGNKFLSHIREVDSILQVVRCFE---------------------DNDIVHVNGKVDPKSDVDVINLELVFSDLDQ 194 (359)
Q Consensus 136 ~~~~~~~~~~l~~i~~aD~il~Vvd~~~---------------------~~~v~~v~nk~d~~~~~~~i~~el~~~d~~~ 194 (359)
+...++...++.++..+|.+++|+|+++ ..|.+.+.||+|+... ..+. .
T Consensus 220 ~~~~~L~~~fl~~~era~~lL~vvDls~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~~~-~~~~---------~ 289 (416)
T 1udx_A 220 SEGKGLGLEFLRHIARTRVLLYVLDAADEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLEE-EAVK---------A 289 (416)
T ss_dssp GGSCCSCHHHHHHHTSSSEEEEEEETTSCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSCH-HHHH---------H
T ss_pred hhhhhhhHHHHHHHHHHHhhhEEeCCccCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCChhhH-HHHH---------H
Confidence 6666777788888899999999999962 1246777899998753 2111 1
Q ss_pred HHHHHHHHhhhccccccchhhHHHHHHHHHHHHHHhcCCC
Q 018241 195 IEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMDGK 234 (359)
Q Consensus 195 l~~~~~~~~~~~~~~~~Sa~~~~~~~~ll~~i~~~L~~~~ 234 (359)
+.+..... ......+||+.+.++.++++.+.+.+.+.+
T Consensus 290 l~~~l~~~--g~~vi~iSA~~g~gi~eL~~~i~~~l~~~~ 327 (416)
T 1udx_A 290 LADALARE--GLAVLPVSALTGAGLPALKEALHALVRSTP 327 (416)
T ss_dssp HHHHHHTT--TSCEEECCTTTCTTHHHHHHHHHHHHHTSC
T ss_pred HHHHHHhc--CCeEEEEECCCccCHHHHHHHHHHHHHhcc
Confidence 11111100 011146789999999999999999997543
No 31
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.62 E-value=1.5e-15 Score=132.45 Aligned_cols=148 Identities=18% Similarity=0.194 Sum_probs=88.2
Q ss_pred CCcEEEEEecCCCChhHHHHHHHhcc-ccccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCCcC
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVVENG-KAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVK 133 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~~~~-~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~~ 133 (359)
..++|+++|.+|||||||+|+|++.. ...+++.+++|.+.....+ + .++.+|||||+..
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~--~------------------~~~~l~Dt~G~~~ 81 (195)
T 1svi_A 22 GLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYII--N------------------DELHFVDVPGYGF 81 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEE--T------------------TTEEEEECCCBCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEE--C------------------CcEEEEECCCCCc
Confidence 45899999999999999999999765 4567778888866554322 2 3599999999864
Q ss_pred CCCc---CcchhhhHhhHHHhc---ccceEEeecCCC----------------ccEEEeCCcccCCcchHHHHhhhhhcc
Q 018241 134 GASQ---GEGLGNKFLSHIREV---DSILQVVRCFED----------------NDIVHVNGKVDPKSDVDVINLELVFSD 191 (359)
Q Consensus 134 ~~~~---~~~~~~~~l~~i~~a---D~il~Vvd~~~~----------------~~v~~v~nk~d~~~~~~~i~~el~~~d 191 (359)
.... .+.+.......++.+ |++++|+|+++. .+++.+.||+|.....+. .. .
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~-~~-----~ 155 (195)
T 1svi_A 82 AKVSKSEREAWGRMIETYITTREELKAVVQIVDLRHAPSNDDVQMYEFLKYYGIPVIVIATKADKIPKGKW-DK-----H 155 (195)
T ss_dssp CSSCHHHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSCGGGH-HH-----H
T ss_pred cccCHHHHHHHHHHHHHHHhhhhcCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECcccCChHHH-HH-----H
Confidence 4321 111111122333444 999999998762 368899999998754321 11 0
Q ss_pred HHHHHHHHHHHhh--hccccccchhhHHHHHHHHHHHHHHhc
Q 018241 192 LDQIEKRMEKLKK--GKAKDSQSKLKEDAEKAALEKIQQALM 231 (359)
Q Consensus 192 ~~~l~~~~~~~~~--~~~~~~~Sa~~~~~~~~ll~~i~~~L~ 231 (359)
.+.+.+. +.. ......+||+.+.++.++++.+.+.++
T Consensus 156 ~~~~~~~---~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~l~ 194 (195)
T 1svi_A 156 AKVVRQT---LNIDPEDELILFSSETKKGKDEAWGAIKKMIN 194 (195)
T ss_dssp HHHHHHH---HTCCTTSEEEECCTTTCTTHHHHHHHHHHHHT
T ss_pred HHHHHHH---HcccCCCceEEEEccCCCCHHHHHHHHHHHhc
Confidence 0111111 111 111156899999999999999988774
No 32
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.62 E-value=8e-16 Score=152.44 Aligned_cols=153 Identities=27% Similarity=0.272 Sum_probs=101.8
Q ss_pred CCcEEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCCcCC
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~~~ 134 (359)
..++|+|+|.||||||||+|+|+|...+.++++|++|+++..+.+.+.+ ..+.+|||||+.+.
T Consensus 179 ~~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g-----------------~~~~l~Dt~G~~~~ 241 (439)
T 1mky_A 179 DAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDG-----------------RKYVFVDTAGLRRK 241 (439)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETT-----------------EEEEESSCSCC---
T ss_pred cCceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECC-----------------EEEEEEECCCCccc
Confidence 4589999999999999999999988778899999999999999988874 46899999998543
Q ss_pred CCcC----cc-hhhhHhhHHHhcccceEEeecCCC----------------ccEEEeCCcccCCcchHHHHhhhhhccHH
Q 018241 135 ASQG----EG-LGNKFLSHIREVDSILQVVRCFED----------------NDIVHVNGKVDPKSDVDVINLELVFSDLD 193 (359)
Q Consensus 135 ~~~~----~~-~~~~~l~~i~~aD~il~Vvd~~~~----------------~~v~~v~nk~d~~~~~~~i~~el~~~d~~ 193 (359)
.... +. .....+.+++.+|++++|+|+++. .+++.+.||+|......... +
T Consensus 242 ~~~~~~~~e~~~~~~~~~~i~~ad~vllv~d~~~~~~~~~~~i~~~l~~~~~~~ilv~NK~Dl~~~~~~~~--------~ 313 (439)
T 1mky_A 242 SRVEPRTVEKYSNYRVVDSIEKADVVVIVLDATQGITRQDQRMAGLMERRGRASVVVFNKWDLVVHREKRY--------D 313 (439)
T ss_dssp --------CCSCCHHHHHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHHTTCEEEEEEECGGGSTTGGGCH--------H
T ss_pred cccchhhHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECccCCCchhhHH--------H
Confidence 3211 11 112345678999999999998762 35788999999764321101 1
Q ss_pred HHHHHH-HHHhhh--ccccccchhhHHHHHHHHHHHHHHhcC
Q 018241 194 QIEKRM-EKLKKG--KAKDSQSKLKEDAEKAALEKIQQALMD 232 (359)
Q Consensus 194 ~l~~~~-~~~~~~--~~~~~~Sa~~~~~~~~ll~~i~~~L~~ 232 (359)
.+.+.+ ..+... .....+||+++.++.++++.+.+.+++
T Consensus 314 ~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~i~~~~~~ 355 (439)
T 1mky_A 314 EFTKLFREKLYFIDYSPLIFTSADKGWNIDRMIDAMNLAYAS 355 (439)
T ss_dssp HHHHHHHHHCGGGTTSCEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCCCcEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 111111 111111 111468999999999999999888865
No 33
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.62 E-value=3.5e-16 Score=155.73 Aligned_cols=154 Identities=20% Similarity=0.159 Sum_probs=105.9
Q ss_pred cCCcEEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCCcC
Q 018241 54 SMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVK 133 (359)
Q Consensus 54 ~~~~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~~ 133 (359)
...++|+++|.||+|||||+|+|++.....++++|++|++.....+.+++ ..+.+|||||+.+
T Consensus 193 ~~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~-----------------~~~~l~DT~G~~~ 255 (456)
T 4dcu_A 193 EEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQ-----------------QEFVIVDTAGMRK 255 (456)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHTSTTEEECC------CTTSEEEEETT-----------------EEEEETTGGGTTT
T ss_pred cccceeEEecCCCCCHHHHHHHHhCCCccccCCCCCeEEEEEEEEEEECC-----------------ceEEEEECCCCCc
Confidence 34689999999999999999999987778899999999999888887764 5699999999865
Q ss_pred CCCcC---cc-hhhhHhhHHHhcccceEEeecCCC----------------ccEEEeCCcccCCcchHHHHhhhhhccHH
Q 018241 134 GASQG---EG-LGNKFLSHIREVDSILQVVRCFED----------------NDIVHVNGKVDPKSDVDVINLELVFSDLD 193 (359)
Q Consensus 134 ~~~~~---~~-~~~~~l~~i~~aD~il~Vvd~~~~----------------~~v~~v~nk~d~~~~~~~i~~el~~~d~~ 193 (359)
..... +. .....+.+++.||++++|+|+++. .+++.+.||+|...+.....+
T Consensus 256 ~~~~~~~~e~~~~~~~~~~~~~ad~~llviD~~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~~~~~-------- 327 (456)
T 4dcu_A 256 KGKVYETTEKYSVLRALKAIDRSEVVAVVLDGEEGIIEQDKRIAGYAHEAGKAVVIVVNKWDAVDKDESTMK-------- 327 (456)
T ss_dssp BTTBCCCCSHHHHHHHHHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHHTTCEEEEEEECGGGSCCCSSHHH--------
T ss_pred CcccchHHHHHHHHHHHHHHhhCCEEEEEEeCCCCcCHHHHHHHHHHHHcCCCEEEEEEChhcCCCchHHHH--------
Confidence 43221 11 122345678999999999999873 358899999997743221111
Q ss_pred HHHHHHHHHhh---hccccccchhhHHHHHHHHHHHHHHhcC
Q 018241 194 QIEKRMEKLKK---GKAKDSQSKLKEDAEKAALEKIQQALMD 232 (359)
Q Consensus 194 ~l~~~~~~~~~---~~~~~~~Sa~~~~~~~~ll~~i~~~L~~ 232 (359)
.+.+....... ......+||+++.++.++++.+.+.+.+
T Consensus 328 ~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~i~~~~~~ 369 (456)
T 4dcu_A 328 EFEENIRDHFQFLDYAPILFMSALTKKRIHTLMPAIIKASEN 369 (456)
T ss_dssp HHHHHHHHHCGGGTTSCEEECCTTTCTTGGGHHHHHHHHHHH
T ss_pred HHHHHHHHhcccCCCCCEEEEcCCCCcCHHHHHHHHHHHHHH
Confidence 11111111111 1112568999999999999999888854
No 34
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.62 E-value=2.6e-16 Score=156.69 Aligned_cols=106 Identities=24% Similarity=0.266 Sum_probs=69.8
Q ss_pred CcEEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCCcCCC
Q 018241 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA 135 (359)
Q Consensus 56 ~~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~~~~ 135 (359)
.++|+|||.||||||||+|+|+|...+.+++.||+|++...+.+... +..+.+|||||+....
T Consensus 23 ~~~V~lvG~~nvGKSTL~n~l~~~~~~~v~~~~g~t~~~~~~~~~~~-----------------~~~~~liDT~G~~~~~ 85 (456)
T 4dcu_A 23 KPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWL-----------------NYDFNLIDTGGIDIGD 85 (456)
T ss_dssp CCEEEEECSSSSSHHHHHHHHEEEEEC-----------CEEEECTTC-----------------SSCCEEECCCC-----
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcceeEEEEEEEEC-----------------CceEEEEECCCCCCcc
Confidence 47999999999999999999998888889999999999888876554 3569999999986332
Q ss_pred Cc-CcchhhhHhhHHHhcccceEEeecCC----------------CccEEEeCCcccCCc
Q 018241 136 SQ-GEGLGNKFLSHIREVDSILQVVRCFE----------------DNDIVHVNGKVDPKS 178 (359)
Q Consensus 136 ~~-~~~~~~~~l~~i~~aD~il~Vvd~~~----------------~~~v~~v~nk~d~~~ 178 (359)
.. .+.+...+..++++||++++|+|+.+ +.+++.+.||+|...
T Consensus 86 ~~~~~~~~~~~~~~~~~ad~il~VvD~~~~~~~~d~~l~~~l~~~~~pvilV~NK~D~~~ 145 (456)
T 4dcu_A 86 EPFLAQIRQQAEIAMDEADVIIFMVNGREGVTAADEEVAKILYRTKKPVVLAVNKLDNTE 145 (456)
T ss_dssp -CCHHHHHHHHHHHHHHCSEEEEEEESSSCSCHHHHHHHHHHTTCCSCEEEEEECC----
T ss_pred hHHHHHHHHHHHhhHhhCCEEEEEEeCCCCCChHHHHHHHHHHHcCCCEEEEEECccchh
Confidence 21 23344556778899999999999876 246889999999764
No 35
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.61 E-value=4.6e-15 Score=134.70 Aligned_cols=158 Identities=15% Similarity=0.113 Sum_probs=92.2
Q ss_pred CCcEEEEEecCCCChhHHHHHHHhccccccCCCC--ceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCCc
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFP--FCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLV 132 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p--~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~ 132 (359)
..++|+|+|.+|||||||+|+|+|... ..+..+ ++|.++..+.+.+.+ ..+.+|||||+.
T Consensus 28 ~~~~i~lvG~~g~GKStlin~l~g~~~-~~~~~~~~~~t~~~~~~~~~~~~-----------------~~i~liDTpG~~ 89 (239)
T 3lxx_A 28 SQLRIVLVGKTGAGKSATGNSILGRKV-FHSGTAAKSITKKCEKRSSSWKE-----------------TELVVVDTPGIF 89 (239)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTSCC-SCC-------CCSCEEEEEEETT-----------------EEEEEEECCSCC
T ss_pred CceEEEEECCCCCCHHHHHHHHcCCCc-CccCCCCCceeeeEEEEEEEeCC-----------------ceEEEEECCCcc
Confidence 458999999999999999999996555 445555 788888887777663 579999999998
Q ss_pred CCCCcCcchhhhHh----hHHHhcccceEEeecCCC--------------------ccEEEeCCcccCCcchHHHHhhhh
Q 018241 133 KGASQGEGLGNKFL----SHIREVDSILQVVRCFED--------------------NDIVHVNGKVDPKSDVDVINLELV 188 (359)
Q Consensus 133 ~~~~~~~~~~~~~l----~~i~~aD~il~Vvd~~~~--------------------~~v~~v~nk~d~~~~~~~i~~el~ 188 (359)
+.......+...+. ...+.+|++++|+|+... .+++.+.||+|.+.+. .+.+.+.
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~l~~~~~~~~~~~~~~~iiv~nK~D~~~~~-~~~~~i~ 168 (239)
T 3lxx_A 90 DTEVPNAETSKEIIRCILLTSPGPHALLLVVPLGRYTEEEHKATEKILKMFGERARSFMILIFTRKDDLGDT-NLHDYLR 168 (239)
T ss_dssp -----CHHHHHHHHHHHHHTTTCCSEEEEEEETTCCSSHHHHHHHHHHHHHHHHHGGGEEEEEECGGGC-----------
T ss_pred CCCCCHHHHHHHHHHHHHhcCCCCcEEEEEeeCCCCCHHHHHHHHHHHHHhhhhccceEEEEEeCCccCCcc-cHHHHHH
Confidence 66544333333333 334567999999998541 1578899999977542 2221111
Q ss_pred hccHHHHHHHHHHHhhhcccccc---chhhHHHHHHHHHHHHHHhcC
Q 018241 189 FSDLDQIEKRMEKLKKGKAKDSQ---SKLKEDAEKAALEKIQQALMD 232 (359)
Q Consensus 189 ~~d~~~l~~~~~~~~~~~~~~~~---Sa~~~~~~~~ll~~i~~~L~~ 232 (359)
... +.+................ ++....++.++++.+.+.+.+
T Consensus 169 ~~~-~~l~~l~~~~~~~~~~~~~~~~~~~~~~~v~~ll~~i~~~~~~ 214 (239)
T 3lxx_A 169 EAP-EDIQDLMDIFGDRYCALNNKATGAEQEAQRAQLLGLIQRVVRE 214 (239)
T ss_dssp --C-HHHHHHHHHHSSSEEECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hch-HHHHHHHHHcCCEEEEEECCCCccccHHHHHHHHHHHHHHHHH
Confidence 111 1223323332221111111 233456788899988888855
No 36
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.60 E-value=3.1e-15 Score=128.46 Aligned_cols=146 Identities=17% Similarity=0.149 Sum_probs=94.6
Q ss_pred CCcEEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCCcCC
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~~~ 134 (359)
..++|+++|.+|||||||+|+|++.........|.++.+.....+.+++. ...+.+|||||....
T Consensus 9 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~---------------~~~~~~~Dt~G~~~~ 73 (180)
T 2g6b_A 9 VAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGV---------------KVKLQMWDTAGQERF 73 (180)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTE---------------EEEEEEEECCCC---
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCE---------------EEEEEEEeCCCcHHH
Confidence 34799999999999999999999666544444555554444444444431 246899999997544
Q ss_pred CCcCcchhhhHhhHHHhcccceEEeecCC--------------------CccEEEeCCcccCCcchHHHHhhhhhccHHH
Q 018241 135 ASQGEGLGNKFLSHIREVDSILQVVRCFE--------------------DNDIVHVNGKVDPKSDVDVINLELVFSDLDQ 194 (359)
Q Consensus 135 ~~~~~~~~~~~l~~i~~aD~il~Vvd~~~--------------------~~~v~~v~nk~d~~~~~~~i~~el~~~d~~~ 194 (359)
.. .....++++|++++|+|+++ +.+++.+.||+|...+..... +.
T Consensus 74 ~~-------~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~--------~~ 138 (180)
T 2g6b_A 74 RS-------VTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHERVVKR--------ED 138 (180)
T ss_dssp ------------CCGGGCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTTSCCCSCH--------HH
T ss_pred HH-------HHHHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccCcccccCH--------HH
Confidence 33 34456688999999999876 235788999999764321111 11
Q ss_pred HHHHHHHHhhhccccccchhhHHHHHHHHHHHHHHhcC
Q 018241 195 IEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMD 232 (359)
Q Consensus 195 l~~~~~~~~~~~~~~~~Sa~~~~~~~~ll~~i~~~L~~ 232 (359)
.+....... .....+||+.+.++.++++.+.+.+.+
T Consensus 139 ~~~~~~~~~--~~~~~~Sa~~~~gi~~l~~~l~~~~~~ 174 (180)
T 2g6b_A 139 GEKLAKEYG--LPFMETSAKTGLNVDLAFTAIAKELKR 174 (180)
T ss_dssp HHHHHHHHT--CCEEECCTTTCTTHHHHHHHHHHHHHC
T ss_pred HHHHHHHcC--CeEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 111111111 112467999999999999999888854
No 37
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=99.60 E-value=2.2e-15 Score=129.11 Aligned_cols=144 Identities=15% Similarity=0.106 Sum_probs=97.0
Q ss_pred CCcEEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCCcCC
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~~~ 134 (359)
..++|+++|.+|||||||+|+|++... .....|+.|.+.....+.+.+. ...+.+|||||....
T Consensus 8 ~~~~i~v~G~~~~GKssl~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~i~Dt~G~~~~ 71 (181)
T 3tw8_B 8 HLFKLLIIGDSGVGKSSLLLRFADNTF-SGSYITTIGVDFKIRTVEINGE---------------KVKLQIWDTAGQERF 71 (181)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHCSCC----CCTTTBSEEEEEEEEEETTE---------------EEEEEEEEETTGGGC
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCC-CCccCCCceeEEEEEEEEECCE---------------EEEEEEEcCCCchhh
Confidence 458999999999999999999995443 3556666776666666666532 146999999997554
Q ss_pred CCcCcchhhhHhhHHHhcccceEEeecCCC-------------------ccEEEeCCcccCCcchHHHHhhhhhccHHHH
Q 018241 135 ASQGEGLGNKFLSHIREVDSILQVVRCFED-------------------NDIVHVNGKVDPKSDVDVINLELVFSDLDQI 195 (359)
Q Consensus 135 ~~~~~~~~~~~l~~i~~aD~il~Vvd~~~~-------------------~~v~~v~nk~d~~~~~~~i~~el~~~d~~~l 195 (359)
.. .....++.+|++++|+|+++. .+++.+.||+|...+... . ....
T Consensus 72 ~~-------~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~-~-------~~~~ 136 (181)
T 3tw8_B 72 RT-------ITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNCDDVCRILVGNKNDDPERKVV-E-------TEDA 136 (181)
T ss_dssp SS-------CCGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHCTTSEEEEEEECTTCGGGCCS-C-------HHHH
T ss_pred hh-------hHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECCCCchhccc-C-------HHHH
Confidence 43 334556889999999999772 457889999996532211 0 0111
Q ss_pred HHHHHHHhhhccccccchhhHHHHHHHHHHHHHHhc
Q 018241 196 EKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALM 231 (359)
Q Consensus 196 ~~~~~~~~~~~~~~~~Sa~~~~~~~~ll~~i~~~L~ 231 (359)
........ .....+||+.+.++.++++.+.+.+.
T Consensus 137 ~~~~~~~~--~~~~~~Sa~~~~gi~~l~~~l~~~~~ 170 (181)
T 3tw8_B 137 YKFAGQMG--IQLFETSAKENVNVEEMFNCITELVL 170 (181)
T ss_dssp HHHHHHHT--CCEEECBTTTTBSHHHHHHHHHHHHH
T ss_pred HHHHHHcC--CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 11111111 11146899999999999998888774
No 38
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.59 E-value=5.7e-15 Score=132.90 Aligned_cols=155 Identities=20% Similarity=0.201 Sum_probs=97.1
Q ss_pred CCcEEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCCcCC
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~~~ 134 (359)
..++|+++|.+|||||||+|+|++.... +++++++|++...+.+... ...+.+|||||+.+.
T Consensus 28 ~~~kI~vvG~~~vGKSsLin~l~~~~~~-~~~~~~~t~~~~~~~~~~~-----------------~~~~~l~DtpG~~~~ 89 (228)
T 2qu8_A 28 HKKTIILSGAPNVGKSSFMNIVSRANVD-VQSYSFTTKNLYVGHFDHK-----------------LNKYQIIDTPGLLDR 89 (228)
T ss_dssp TSEEEEEECSTTSSHHHHHHHHTTTCEE-EECC-----CEEEEEEEET-----------------TEEEEEEECTTTTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCc-cCCCCCcceeeeeeeeecC-----------------CCeEEEEECCCCcCc
Confidence 3589999999999999999999965543 6788999988887776655 356999999999654
Q ss_pred CCcCcc-h-hhhHhhHHHhcccceEEeecCCC---------------------ccEEEeCCcccCCcchHHHHhhhhhcc
Q 018241 135 ASQGEG-L-GNKFLSHIREVDSILQVVRCFED---------------------NDIVHVNGKVDPKSDVDVINLELVFSD 191 (359)
Q Consensus 135 ~~~~~~-~-~~~~l~~i~~aD~il~Vvd~~~~---------------------~~v~~v~nk~d~~~~~~~i~~el~~~d 191 (359)
...... + ........+.+|++++|+|+++. .+++.+.||+|...+... ..+ .
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~~-~~~----~ 164 (228)
T 2qu8_A 90 AFENRNTIEMTTITALAHINGVILFIIDISEQCGLTIKEQINLFYSIKSVFSNKSIVIGFNKIDKCNMDSL-SID----N 164 (228)
T ss_dssp CGGGCCHHHHHHHHHHHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC-CCCEEEEEECGGGCC--CC-CHH----H
T ss_pred ccchhhhHHHHHHHHhhccccEEEEEEecccccCcchHHHHHHHHHHHHhhcCCcEEEEEeCcccCCchhh-HHH----H
Confidence 322111 1 11122335778999999998752 357889999997643211 110 0
Q ss_pred HHHHHHHHHHHhhhccccccchhhHHHHHHHHHHHHHHhcC
Q 018241 192 LDQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMD 232 (359)
Q Consensus 192 ~~~l~~~~~~~~~~~~~~~~Sa~~~~~~~~ll~~i~~~L~~ 232 (359)
...+...............+||+.+.++.++++.+.+.+.+
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~i~~ 205 (228)
T 2qu8_A 165 KLLIKQILDNVKNPIKFSSFSTLTGVGVEQAKITACELLKN 205 (228)
T ss_dssp HHHHHHHHHHCCSCEEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCceEEEEecccCCCHHHHHHHHHHHHHH
Confidence 00111111111000112578999999999999999888743
No 39
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.59 E-value=3.8e-15 Score=127.64 Aligned_cols=145 Identities=19% Similarity=0.124 Sum_probs=99.6
Q ss_pred cCCcEEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCCcC
Q 018241 54 SMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVK 133 (359)
Q Consensus 54 ~~~~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~~ 133 (359)
...++|+++|.+|||||||+|+|++. .......|++|.+.....+.+++ ..+.+|||||...
T Consensus 6 ~~~~~i~v~G~~~~GKssl~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~l~Dt~G~~~ 67 (178)
T 2lkc_A 6 ERPPVVTIMGHVDHGKTTLLDAIRHS-KVTEQEAGGITQHIGAYQVTVND-----------------KKITFLDTPGHEA 67 (178)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHTT-CSSCSSCCSSSTTCCCCEEEETT-----------------EEEEESCCCSSSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC-ccccCCCCceeEeeeEEEEEeCC-----------------ceEEEEECCCCHH
Confidence 35689999999999999999999954 44455677777777666666653 5689999999865
Q ss_pred CCCcCcchhhhHhhHHHhcccceEEeecCC----------------CccEEEeCCcccCCcc-hHHHHhhhhhccHHHHH
Q 018241 134 GASQGEGLGNKFLSHIREVDSILQVVRCFE----------------DNDIVHVNGKVDPKSD-VDVINLELVFSDLDQIE 196 (359)
Q Consensus 134 ~~~~~~~~~~~~l~~i~~aD~il~Vvd~~~----------------~~~v~~v~nk~d~~~~-~~~i~~el~~~d~~~l~ 196 (359)
... .....++.+|++++|+|+.+ +.+++.+.||+|.... .+.+...+..
T Consensus 68 ~~~-------~~~~~~~~~d~~i~v~d~~~~~~~~~~~~l~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~------- 133 (178)
T 2lkc_A 68 FTT-------MRARGAQVTDIVILVVAADDGVMPQTVEAINHAKAANVPIIVAINKMDKPEANPDRVMQELME------- 133 (178)
T ss_dssp SSC-------SCCSSCCCCCEEEEEEETTCCCCHHHHHHHHHHGGGSCCEEEEEETTTSSCSCHHHHHHHHTT-------
T ss_pred HHH-------HHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHhCCCCEEEEEECccCCcCCHHHHHHHHHh-------
Confidence 543 12344578999999999876 2368899999997642 1111111100
Q ss_pred HHHHHHhhh----ccccccchhhHHHHHHHHHHHHHHhcC
Q 018241 197 KRMEKLKKG----KAKDSQSKLKEDAEKAALEKIQQALMD 232 (359)
Q Consensus 197 ~~~~~~~~~----~~~~~~Sa~~~~~~~~ll~~i~~~L~~ 232 (359)
...+... .....+||+.+.++.++++.+.+.+..
T Consensus 134 --~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~~~ 171 (178)
T 2lkc_A 134 --YNLVPEEWGGDTIFCKLSAKTKEGLDHLLEMILLVSEM 171 (178)
T ss_dssp --TTCCBTTTTSSEEEEECCSSSSHHHHHHHHHHHHHHHH
T ss_pred --cCcChhHcCCcccEEEEecCCCCCHHHHHHHHHHhhhh
Confidence 0000000 111468999999999999999887754
No 40
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.59 E-value=1.2e-15 Score=150.18 Aligned_cols=149 Identities=19% Similarity=0.139 Sum_probs=103.0
Q ss_pred CCcEEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCCcCC
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~~~ 134 (359)
..++|+|+|.+|+|||||+|+|++.....+++.+++|.++....+.+.+ ...+.+|||||+.++
T Consensus 33 ~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~----------------~~~l~liDTpG~~d~ 96 (423)
T 3qq5_A 33 FRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHP----------------IGPVTLVDTPGLDDV 96 (423)
T ss_dssp CCEEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEETT----------------TEEEEEEECSSTTCC
T ss_pred CCEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECC----------------CCeEEEEECcCCCcc
Confidence 4579999999999999999999977777888999999999988887764 226999999999877
Q ss_pred CCcCcchhhhHhhHHHhcccceEEeecCC--------------CccEEEeCCcccCCcchHHHHhhhhhccHHHHHHHHH
Q 018241 135 ASQGEGLGNKFLSHIREVDSILQVVRCFE--------------DNDIVHVNGKVDPKSDVDVINLELVFSDLDQIEKRME 200 (359)
Q Consensus 135 ~~~~~~~~~~~l~~i~~aD~il~Vvd~~~--------------~~~v~~v~nk~d~~~~~~~i~~el~~~d~~~l~~~~~ 200 (359)
...+......+...++.+|++++|+|+.. +.+++.+.||+|...+... +. ..
T Consensus 97 ~~l~~~~~~~~~~~l~~aD~vllVvD~~~~~~~~~~l~~l~~~~~piIvV~NK~Dl~~~~~~----------~~----~~ 162 (423)
T 3qq5_A 97 GELGRLRVEKARRVFYRADCGILVTDSAPTPYEDDVVNLFKEMEIPFVVVVNKIDVLGEKAE----------EL----KG 162 (423)
T ss_dssp CTTCCCCHHHHHHHHTSCSEEEEECSSSCCHHHHHHHHHHHHTTCCEEEECCCCTTTTCCCT----------HH----HH
T ss_pred cchhHHHHHHHHHHHhcCCEEEEEEeCCChHHHHHHHHHHHhcCCCEEEEEeCcCCCCccHH----------HH----HH
Confidence 65544445567788899999999999833 2468999999998754321 00 01
Q ss_pred HHhhh--ccccccchhhHHHHHHHHHHHHHHhcCC
Q 018241 201 KLKKG--KAKDSQSKLKEDAEKAALEKIQQALMDG 233 (359)
Q Consensus 201 ~~~~~--~~~~~~Sa~~~~~~~~ll~~i~~~L~~~ 233 (359)
.+... .....+||+++.++.++++.+.+.+++.
T Consensus 163 ~l~~~~g~~v~~vSAktg~gI~eL~~~L~~~l~~~ 197 (423)
T 3qq5_A 163 LYESRYEAKVLLVSALQKKGFDDIGKTISEILPGD 197 (423)
T ss_dssp HSSCCTTCCCCCCSSCCTTSTTTHHHHHHHHSCCC
T ss_pred HHHHHcCCCEEEEECCCCCCHHHHHHHHHHhhhhh
Confidence 11111 1125789999999999999999999653
No 41
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.58 E-value=8.5e-15 Score=124.47 Aligned_cols=142 Identities=20% Similarity=0.205 Sum_probs=94.4
Q ss_pred ccCCcEEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCCc
Q 018241 53 ISMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLV 132 (359)
Q Consensus 53 ~~~~~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~ 132 (359)
+...++|+++|.+|||||||+|+|+++.... .. .|.......+.+. ...+.+|||||..
T Consensus 4 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~--~~--~t~~~~~~~~~~~-----------------~~~~~~~Dt~G~~ 62 (171)
T 1upt_A 4 MTREMRILILGLDGAGKTTILYRLQVGEVVT--TI--PTIGFNVETVTYK-----------------NLKFQVWDLGGLT 62 (171)
T ss_dssp CSSCEEEEEECSTTSSHHHHHHHHHHSSCCC--CC--CCSSEEEEEEEET-----------------TEEEEEEEECCCG
T ss_pred CCCccEEEEECCCCCCHHHHHHHHhcCCCCC--cC--CcCccceEEEEEC-----------------CEEEEEEECCCCh
Confidence 4456899999999999999999999665432 22 2333334444443 3579999999985
Q ss_pred CCCCcCcchhhhHhhHHHhcccceEEeecCCC---------------------ccEEEeCCcccCCcch--HHHHhhhhh
Q 018241 133 KGASQGEGLGNKFLSHIREVDSILQVVRCFED---------------------NDIVHVNGKVDPKSDV--DVINLELVF 189 (359)
Q Consensus 133 ~~~~~~~~~~~~~l~~i~~aD~il~Vvd~~~~---------------------~~v~~v~nk~d~~~~~--~~i~~el~~ 189 (359)
.... .+...++.+|++++|+|+++. .+++.+.||+|...+. ..+..++..
T Consensus 63 ~~~~-------~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~ 135 (171)
T 1upt_A 63 SIRP-------YWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTSSEMANSLGL 135 (171)
T ss_dssp GGGG-------GGGGGCTTCSEEEEEEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTG
T ss_pred hhhH-------HHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhCCCEEEEEEECCCCcCCCCHHHHHHHhCc
Confidence 4332 334556789999999998763 3578899999976542 122111110
Q ss_pred ccHHHHHHHHHHHhh-hccccccchhhHHHHHHHHHHHHHHhcC
Q 018241 190 SDLDQIEKRMEKLKK-GKAKDSQSKLKEDAEKAALEKIQQALMD 232 (359)
Q Consensus 190 ~d~~~l~~~~~~~~~-~~~~~~~Sa~~~~~~~~ll~~i~~~L~~ 232 (359)
.. ... ......+||+.+.++.++++.+.+.+.+
T Consensus 136 ~~----------~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 169 (171)
T 1upt_A 136 PA----------LKDRKWQIFKTSATKGTGLDEAMEWLVETLKS 169 (171)
T ss_dssp GG----------CTTSCEEEEECCTTTCTTHHHHHHHHHHHHHT
T ss_pred hh----------ccCCceEEEECcCCCCcCHHHHHHHHHHHHhh
Confidence 00 000 0111468999999999999999888754
No 42
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=99.58 E-value=9.3e-15 Score=128.65 Aligned_cols=144 Identities=19% Similarity=0.157 Sum_probs=93.5
Q ss_pred CCcEEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCCcCC
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~~~ 134 (359)
..++|+++|.+|||||||+|+|+++... ..++.++.......+.+.+. ...+.+|||||..+.
T Consensus 23 ~~~ki~vvG~~~~GKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~---------------~~~~~l~Dt~G~~~~ 85 (201)
T 3oes_A 23 RYRKVVILGYRCVGKTSLAHQFVEGEFS--EGYDPTVENTYSKIVTLGKD---------------EFHLHLVDTAGQDEY 85 (201)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCCC--SCCCCCSEEEEEEEEC-------------------CEEEEEEEECCCCTT
T ss_pred CcEEEEEECCCCcCHHHHHHHHHhCCCC--CCCCCccceEEEEEEEECCE---------------EEEEEEEECCCccch
Confidence 4589999999999999999999965544 23333443333333333221 356899999997655
Q ss_pred CCcCcchhhhHhhHHHhcccceEEeecCC---------------------CccEEEeCCcccCCcchHHHHhhhhhccHH
Q 018241 135 ASQGEGLGNKFLSHIREVDSILQVVRCFE---------------------DNDIVHVNGKVDPKSDVDVINLELVFSDLD 193 (359)
Q Consensus 135 ~~~~~~~~~~~l~~i~~aD~il~Vvd~~~---------------------~~~v~~v~nk~d~~~~~~~i~~el~~~d~~ 193 (359)
.. .....++.+|++++|+|+++ +.+++.+.||+|...+......
T Consensus 86 ~~-------~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~-------- 150 (201)
T 3oes_A 86 SI-------LPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSPEREVQAV-------- 150 (201)
T ss_dssp CC-------CCGGGTTTCCEEEEEEETTCHHHHHHHHHHHHHHHC-----CCCEEEEEECTTCGGGCCSCHH--------
T ss_pred HH-------HHHHHHhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCccccccCHH--------
Confidence 43 23455678999999999875 2368899999997543211111
Q ss_pred HHHHHHHHHhhhccccccchhhHHHHHHHHHHHHHHhcC
Q 018241 194 QIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMD 232 (359)
Q Consensus 194 ~l~~~~~~~~~~~~~~~~Sa~~~~~~~~ll~~i~~~L~~ 232 (359)
.......... .....+||+.+.++.++++.+.+.+.+
T Consensus 151 ~~~~~~~~~~--~~~~~~Sa~~~~~v~~l~~~l~~~i~~ 187 (201)
T 3oes_A 151 EGKKLAESWG--ATFMESSARENQLTQGIFTKVIQEIAR 187 (201)
T ss_dssp HHHHHHHHHT--CEEEECCTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhC--CeEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence 1111111111 112568999999999999999888854
No 43
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=99.58 E-value=1.3e-14 Score=124.97 Aligned_cols=144 Identities=17% Similarity=0.111 Sum_probs=96.2
Q ss_pred CcEEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCCcCCC
Q 018241 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA 135 (359)
Q Consensus 56 ~~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~~~~ 135 (359)
.++|+++|.+|||||||+|+|+++.. ...++.++.......+.+.+. ...+.+|||||.....
T Consensus 6 ~~ki~~~G~~~~GKSsli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~---------------~~~~~l~Dt~G~~~~~ 68 (181)
T 3t5g_A 6 SRKIAILGYRSVGKSSLTIQFVEGQF--VDSYDPTIENTFTKLITVNGQ---------------EYHLQLVDTAGQDEYS 68 (181)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSC--CSCCCTTCCEEEEEEEEETTE---------------EEEEEEEECCCCCTTC
T ss_pred eEEEEEECcCCCCHHHHHHHHHcCCC--CCCCCCCccccEEEEEEECCE---------------EEEEEEEeCCCchhhh
Confidence 47999999999999999999995543 344555554444444544431 2468999999987654
Q ss_pred CcCcchhhhHhhHHHhcccceEEeecCC---------------------CccEEEeCCcccCCcchHHHHhhhhhccHHH
Q 018241 136 SQGEGLGNKFLSHIREVDSILQVVRCFE---------------------DNDIVHVNGKVDPKSDVDVINLELVFSDLDQ 194 (359)
Q Consensus 136 ~~~~~~~~~~l~~i~~aD~il~Vvd~~~---------------------~~~v~~v~nk~d~~~~~~~i~~el~~~d~~~ 194 (359)
. .....++.+|++++|+|+++ +.+++.+.||+|...+..... +.
T Consensus 69 ~-------~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~--------~~ 133 (181)
T 3t5g_A 69 I-------FPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISY--------EE 133 (181)
T ss_dssp C-------CCGGGTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHC----CCEEEEEECTTCTTTCCSCH--------HH
T ss_pred H-------HHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcceecH--------HH
Confidence 3 22345578999999999876 236889999999653321111 11
Q ss_pred HHHHHHHHhhhccccccchhhHHHHHHHHHHHHHHhcCC
Q 018241 195 IEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMDG 233 (359)
Q Consensus 195 l~~~~~~~~~~~~~~~~Sa~~~~~~~~ll~~i~~~L~~~ 233 (359)
......... .....+||+++.++.++++.+.+.+...
T Consensus 134 ~~~~~~~~~--~~~~~~Sa~~~~~v~~l~~~l~~~~~~~ 170 (181)
T 3t5g_A 134 GKALAESWN--AAFLESSAKENQTAVDVFRRIILEAEKM 170 (181)
T ss_dssp HHHHHHHTT--CEEEECCTTSHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHhC--CcEEEEecCCCCCHHHHHHHHHHHHHHh
Confidence 122111111 1125689999999999999999888653
No 44
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=99.58 E-value=5.4e-15 Score=126.49 Aligned_cols=142 Identities=19% Similarity=0.153 Sum_probs=95.6
Q ss_pred cEEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCCcCCCC
Q 018241 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGAS 136 (359)
Q Consensus 57 ~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~~~~~ 136 (359)
++|+++|.+|||||||+|+|++... .....|.++.+.....+.+++. ...+.+|||||......
T Consensus 15 ~~i~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~Dt~G~~~~~~ 78 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFMYDSF-DNTYQATIGIDFLSKTMYLEDR---------------TVRLQLWDTAGQERFRS 78 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSCC-CSSCCCCCSEEEEEEEEEETTE---------------EEEEEEEEECCSGGGGG
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCC-CCCCCCceeeEEEEEEEEECCe---------------EEEEEEEECCCcHHHHH
Confidence 7999999999999999999995443 3344555555565555655432 24699999999754332
Q ss_pred cCcchhhhHhhHHHhcccceEEeecCC--------------------CccEEEeCCcccCCcchHHHHhhhhhccHHHHH
Q 018241 137 QGEGLGNKFLSHIREVDSILQVVRCFE--------------------DNDIVHVNGKVDPKSDVDVINLELVFSDLDQIE 196 (359)
Q Consensus 137 ~~~~~~~~~l~~i~~aD~il~Vvd~~~--------------------~~~v~~v~nk~d~~~~~~~i~~el~~~d~~~l~ 196 (359)
.....++++|++++|+|+++ +.+++.+.||+|...+.... .+...
T Consensus 79 -------~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~--------~~~~~ 143 (179)
T 2y8e_A 79 -------LIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVS--------TEEGE 143 (179)
T ss_dssp -------GSHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECGGGGGGCCSC--------HHHHH
T ss_pred -------HHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccCcCC--------HHHHH
Confidence 34456789999999999876 23578899999975432110 01111
Q ss_pred HHHHHHhhhccccccchhhHHHHHHHHHHHHHHhc
Q 018241 197 KRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALM 231 (359)
Q Consensus 197 ~~~~~~~~~~~~~~~Sa~~~~~~~~ll~~i~~~L~ 231 (359)
....... .....+||+.+.++.++++.+.+.++
T Consensus 144 ~~~~~~~--~~~~~~Sa~~~~~i~~l~~~l~~~~~ 176 (179)
T 2y8e_A 144 RKAKELN--VMFIETSAKAGYNVKQLFRRVAAALP 176 (179)
T ss_dssp HHHHHHT--CEEEEEBTTTTBSHHHHHHHHHHTCC
T ss_pred HHHHHcC--CeEEEEeCCCCCCHHHHHHHHHHHHh
Confidence 1111111 11156899999999999999988774
No 45
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=99.58 E-value=7.8e-15 Score=127.83 Aligned_cols=145 Identities=14% Similarity=0.141 Sum_probs=99.1
Q ss_pred CCcEEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCCcCC
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~~~ 134 (359)
..++|+++|.+|||||||+|+|++. .......|.+|.+.....+.+++. ...+.+|||||....
T Consensus 15 ~~~ki~v~G~~~~GKSsli~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~i~Dt~G~~~~ 78 (196)
T 3tkl_A 15 YLFKLLLIGDSGVGKSCLLLRFADD-TYTESYISTIGVDFKIRTIELDGK---------------TIKLQIWDTAGQERF 78 (196)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHS-CCCSCCCCCSSEEEEEEEEEETTE---------------EEEEEEEEECCSGGG
T ss_pred cceEEEEECcCCCCHHHHHHHHHcC-CCCCCCCCcccceEEEEEEEECCE---------------EEEEEEEECCCcHhh
Confidence 3479999999999999999999944 444455666666666666666532 146999999997544
Q ss_pred CCcCcchhhhHhhHHHhcccceEEeecCC--------------------CccEEEeCCcccCCcchHHHHhhhhhccHHH
Q 018241 135 ASQGEGLGNKFLSHIREVDSILQVVRCFE--------------------DNDIVHVNGKVDPKSDVDVINLELVFSDLDQ 194 (359)
Q Consensus 135 ~~~~~~~~~~~l~~i~~aD~il~Vvd~~~--------------------~~~v~~v~nk~d~~~~~~~i~~el~~~d~~~ 194 (359)
.. .....++.+|++++|+|+++ +.+++.+.||+|...+... ....
T Consensus 79 ~~-------~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~~--------~~~~ 143 (196)
T 3tkl_A 79 RT-------ITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVV--------DYTT 143 (196)
T ss_dssp CT-------THHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCS--------CHHH
T ss_pred hh-------hHHHHHhhCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECccccccccc--------CHHH
Confidence 33 34566788999999999887 2467889999997643211 0011
Q ss_pred HHHHHHHHhhhccccccchhhHHHHHHHHHHHHHHhcC
Q 018241 195 IEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMD 232 (359)
Q Consensus 195 l~~~~~~~~~~~~~~~~Sa~~~~~~~~ll~~i~~~L~~ 232 (359)
......... .....+||+.+.++.++++.+.+.+.+
T Consensus 144 ~~~~~~~~~--~~~~~~Sa~~g~gv~~l~~~l~~~i~~ 179 (196)
T 3tkl_A 144 AKEFADSLG--IPFLETSAKNATNVEQSFMTMAAEIKK 179 (196)
T ss_dssp HHHHHHHTT--CCEEEECTTTCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHcC--CcEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 111111111 112568999999999999888887754
No 46
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=99.58 E-value=6.3e-15 Score=124.97 Aligned_cols=143 Identities=19% Similarity=0.190 Sum_probs=91.6
Q ss_pred CcEEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCCcCCC
Q 018241 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA 135 (359)
Q Consensus 56 ~~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~~~~ 135 (359)
.++|+++|.+|||||||+|+|++... .....|.++.+.....+.+++. ...+.+|||||.....
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~l~D~~G~~~~~ 66 (170)
T 1g16_A 3 IMKILLIGDSGVGKSCLLVRFVEDKF-NPSFITTIGIDFKIKTVDINGK---------------KVKLQIWDTAGQERFR 66 (170)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHCCC-CC-------CCEEEEEEESSSC---------------EEEEEEECCTTGGGTS
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCCC-CCCCCCccceeEEEEEEEECCE---------------EEEEEEEeCCCChhhh
Confidence 47999999999999999999995443 3344555555555555555432 2468999999976543
Q ss_pred CcCcchhhhHhhHHHhcccceEEeecCC--------------------CccEEEeCCcccCCcchHHHHhhhhhccHHHH
Q 018241 136 SQGEGLGNKFLSHIREVDSILQVVRCFE--------------------DNDIVHVNGKVDPKSDVDVINLELVFSDLDQI 195 (359)
Q Consensus 136 ~~~~~~~~~~l~~i~~aD~il~Vvd~~~--------------------~~~v~~v~nk~d~~~~~~~i~~el~~~d~~~l 195 (359)
. .....++.+|++++|+|+++ +.+++.+.||+|..... ... +..
T Consensus 67 ~-------~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~-~~~--------~~~ 130 (170)
T 1g16_A 67 T-------ITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETRV-VTA--------DQG 130 (170)
T ss_dssp C-------CCHHHHTTEEEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTCC-SCH--------HHH
T ss_pred h-------hHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCCcCc-cCH--------HHH
Confidence 3 33456688999999999876 23578899999973211 100 111
Q ss_pred HHHHHHHhhhccccccchhhHHHHHHHHHHHHHHhcC
Q 018241 196 EKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMD 232 (359)
Q Consensus 196 ~~~~~~~~~~~~~~~~Sa~~~~~~~~ll~~i~~~L~~ 232 (359)
+....... .....+||+.+.++.++++.+.+.+.+
T Consensus 131 ~~~~~~~~--~~~~~~Sa~~~~gv~~l~~~l~~~~~~ 165 (170)
T 1g16_A 131 EALAKELG--IPFIESSAKNDDNVNEIFFTLAKLIQE 165 (170)
T ss_dssp HHHHHHHT--CCEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred HHHHHHcC--CeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 11111111 112568999999999999998887753
No 47
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=99.58 E-value=1.3e-14 Score=122.65 Aligned_cols=142 Identities=15% Similarity=0.069 Sum_probs=91.5
Q ss_pred CcEEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCCcCCC
Q 018241 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA 135 (359)
Q Consensus 56 ~~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~~~~ 135 (359)
.++|+++|.+|||||||+|+|+++... ..+..++.......+.+.+. ...+.+|||||..+..
T Consensus 3 ~~ki~v~G~~~~GKssli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~---------------~~~~~l~D~~G~~~~~ 65 (167)
T 1c1y_A 3 EYKLVVLGSGGVGKSALTVQFVQGIFV--EKYDPTIEDSYRKQVEVDCQ---------------QCMLEILDTAGTEQFT 65 (167)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHCCCC--CSCCCCSEEEEEEEEESSSC---------------EEEEEEEEECSSCSST
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCCCC--CCCCCCccceEEEEEEECCE---------------EEEEEEEECCChHHHH
Confidence 379999999999999999999965432 22333333232233333321 2468999999986544
Q ss_pred CcCcchhhhHhhHHHhcccceEEeecCC---------------------CccEEEeCCcccCCcchHHHHhhhhhccHHH
Q 018241 136 SQGEGLGNKFLSHIREVDSILQVVRCFE---------------------DNDIVHVNGKVDPKSDVDVINLELVFSDLDQ 194 (359)
Q Consensus 136 ~~~~~~~~~~l~~i~~aD~il~Vvd~~~---------------------~~~v~~v~nk~d~~~~~~~i~~el~~~d~~~ 194 (359)
. .....++++|++++|+|+.+ +.+++.+.||+|...+... ..+.
T Consensus 66 ~-------~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~--------~~~~ 130 (167)
T 1c1y_A 66 A-------MRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVV--------GKEQ 130 (167)
T ss_dssp T-------HHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGCCS--------CHHH
T ss_pred H-------HHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCcCCCcEEEEEECccccccccC--------CHHH
Confidence 3 33456688999999999876 2357889999997643211 1111
Q ss_pred HHHHHHHHhhhccccccchhhHHHHHHHHHHHHHHh
Q 018241 195 IEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQAL 230 (359)
Q Consensus 195 l~~~~~~~~~~~~~~~~Sa~~~~~~~~ll~~i~~~L 230 (359)
......... ......+||+.+.++.++++.+.+.+
T Consensus 131 ~~~~~~~~~-~~~~~~~Sa~~~~gi~~l~~~l~~~i 165 (167)
T 1c1y_A 131 GQNLARQWC-NCAFLESSAKSKINVNEIFYDLVRQI 165 (167)
T ss_dssp HHHHHHHTT-SCEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred HHHHHHHcc-CCcEEEecCCCCCCHHHHHHHHHHHH
Confidence 122111111 11115689999999999999988776
No 48
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=99.57 E-value=3.5e-15 Score=126.39 Aligned_cols=141 Identities=18% Similarity=0.066 Sum_probs=80.7
Q ss_pred CcEEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCCcCCC
Q 018241 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA 135 (359)
Q Consensus 56 ~~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~~~~ 135 (359)
.++|+++|.+|||||||+|+|++.......+.+++|... .+.+.+. ...+.+|||||.....
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~---~~~~~~~---------------~~~~~i~D~~g~~~~~ 63 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYDR---SIVVDGE---------------EASLMVYDIWEQDGGR 63 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHCCC----------CEEEE---EEEETTE---------------EEEEEEEECC------
T ss_pred eEEEEEECCCCCCHHHHHHHHcCccccCCCCccccceEE---EEEECCE---------------EEEEEEEECCCCccch
Confidence 479999999999999999999977666666777776532 2233321 3568999999986543
Q ss_pred CcCcchhhhHhhHHHhcccceEEeecCC---------------------CccEEEeCCcccCCcchHHHHhhhhhccHHH
Q 018241 136 SQGEGLGNKFLSHIREVDSILQVVRCFE---------------------DNDIVHVNGKVDPKSDVDVINLELVFSDLDQ 194 (359)
Q Consensus 136 ~~~~~~~~~~l~~i~~aD~il~Vvd~~~---------------------~~~v~~v~nk~d~~~~~~~i~~el~~~d~~~ 194 (359)
. .....++.+|++++|+|+++ +.+++.+.||+|...+...... .
T Consensus 64 ~-------~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~--------~ 128 (166)
T 3q72_A 64 W-------LPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVD--------E 128 (166)
T ss_dssp ----------------CCEEEEEEETTCHHHHHHHHHHHHHHHHCC---CCCEEEEEECTTCCSSCCSCHH--------H
T ss_pred h-------hhhhhhhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccccccccccCHH--------H
Confidence 3 22345688999999999875 2368899999997643221111 1
Q ss_pred HHHHHHHHhhhccccccchhhHHHHHHHHHHHHHHhc
Q 018241 195 IEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALM 231 (359)
Q Consensus 195 l~~~~~~~~~~~~~~~~Sa~~~~~~~~ll~~i~~~L~ 231 (359)
.+....... .....+||+.+.++.++++.+.+.+.
T Consensus 129 ~~~~~~~~~--~~~~~~Sa~~~~gi~~l~~~l~~~~~ 163 (166)
T 3q72_A 129 GRACAVVFD--CKFIETSAALHHNVQALFEGVVRQIR 163 (166)
T ss_dssp HHHHHHHTT--CEEEECBGGGTBSHHHHHHHHHHHHH
T ss_pred HHHHHHHhC--CcEEEeccCCCCCHHHHHHHHHHHHH
Confidence 111111111 11256899999999999999888774
No 49
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=99.57 E-value=1.2e-14 Score=125.51 Aligned_cols=141 Identities=17% Similarity=0.123 Sum_probs=93.9
Q ss_pred CcEEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCCcCCC
Q 018241 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA 135 (359)
Q Consensus 56 ~~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~~~~ 135 (359)
.++|+++|.+|||||||+|+|++... ...+++++.+.....+.+++. ...+.+|||||.....
T Consensus 4 ~~ki~v~G~~~~GKSsli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~---------------~~~~~i~Dt~G~~~~~ 66 (189)
T 4dsu_A 4 EYKLVVVGADGVGKSALTIQLIQNHF--VDEYDPTIEDSYRKQVVIDGE---------------TCLLDILDTAGQEEYS 66 (189)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSSC--CCCCCTTCCEEEEEEEEETTE---------------EEEEEEEECCCC---C
T ss_pred EEEEEEECCCCCCHHHHHHHHHhCCC--CCCCCCCchheEEEEEEECCc---------------EEEEEEEECCCcHHHH
Confidence 47999999999999999999996553 345566665555555555432 2457889999976544
Q ss_pred CcCcchhhhHhhHHHhcccceEEeecCC---------------------CccEEEeCCcccCCcchHHHHhhhhhccHHH
Q 018241 136 SQGEGLGNKFLSHIREVDSILQVVRCFE---------------------DNDIVHVNGKVDPKSDVDVINLELVFSDLDQ 194 (359)
Q Consensus 136 ~~~~~~~~~~l~~i~~aD~il~Vvd~~~---------------------~~~v~~v~nk~d~~~~~~~i~~el~~~d~~~ 194 (359)
. .....++.+|++++|+|+.+ +.+++.+.||+|....... .+.
T Consensus 67 ~-------~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~---------~~~ 130 (189)
T 4dsu_A 67 A-------MRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPSRTVD---------TKQ 130 (189)
T ss_dssp T-------THHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTSSSCSSC---------HHH
T ss_pred H-------HHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccCcccccC---------HHH
Confidence 3 33455678999999999876 2468899999997632100 011
Q ss_pred HHHHHHHHhhhccccccchhhHHHHHHHHHHHHHHhc
Q 018241 195 IEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALM 231 (359)
Q Consensus 195 l~~~~~~~~~~~~~~~~Sa~~~~~~~~ll~~i~~~L~ 231 (359)
......... .....+||+.+.++.++++.+.+.+.
T Consensus 131 ~~~~~~~~~--~~~~~~Sa~~g~gi~~l~~~l~~~~~ 165 (189)
T 4dsu_A 131 AQDLARSYG--IPFIETSAKTRQGVDDAFYTLVREIR 165 (189)
T ss_dssp HHHHHHHHT--CCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHcC--CeEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 111111111 11246799999999999998888774
No 50
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=99.57 E-value=1.3e-14 Score=122.31 Aligned_cols=142 Identities=18% Similarity=0.141 Sum_probs=92.2
Q ss_pred CcEEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCCcCCC
Q 018241 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA 135 (359)
Q Consensus 56 ~~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~~~~ 135 (359)
.++|+++|.+|||||||+|+|+++.... .+..++.+.....+.+.+. ...+.+|||||.....
T Consensus 3 ~~~i~v~G~~~~GKSsli~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~---------------~~~~~l~D~~G~~~~~ 65 (167)
T 1kao_A 3 EYKVVVLGSGGVGKSALTVQFVTGTFIE--KYDPTIEDFYRKEIEVDSS---------------PSVLEILDTAGTEQFA 65 (167)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCCCS--CCCTTCCEEEEEEEEETTE---------------EEEEEEEECCCTTCCH
T ss_pred EEEEEEECCCCCCHHHHHHHHHcCCCcc--cCCCCcceeEEEEEEECCE---------------EEEEEEEECCCchhhH
Confidence 3799999999999999999999655432 2333433333333444321 2458999999975432
Q ss_pred CcCcchhhhHhhHHHhcccceEEeecCC---------------------CccEEEeCCcccCCcchHHHHhhhhhccHHH
Q 018241 136 SQGEGLGNKFLSHIREVDSILQVVRCFE---------------------DNDIVHVNGKVDPKSDVDVINLELVFSDLDQ 194 (359)
Q Consensus 136 ~~~~~~~~~~l~~i~~aD~il~Vvd~~~---------------------~~~v~~v~nk~d~~~~~~~i~~el~~~d~~~ 194 (359)
. .....++.+|++++|+|+.+ +.+++.+.||+|...+.+.... .
T Consensus 66 ~-------~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~--------~ 130 (167)
T 1kao_A 66 S-------MRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSS--------E 130 (167)
T ss_dssp H-------HHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGCCSCHH--------H
T ss_pred H-------HHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcccccccCCHH--------H
Confidence 2 34456788999999999876 2467899999996532211111 1
Q ss_pred HHHHHHHHhhhccccccchhhHHHHHHHHHHHHHHhc
Q 018241 195 IEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALM 231 (359)
Q Consensus 195 l~~~~~~~~~~~~~~~~Sa~~~~~~~~ll~~i~~~L~ 231 (359)
......... .....+||+.+.++.++++.+.+.+.
T Consensus 131 ~~~~~~~~~--~~~~~~Sa~~~~gi~~l~~~l~~~~~ 165 (167)
T 1kao_A 131 GRALAEEWG--CPFMETSAKSKTMVDELFAEIVRQMN 165 (167)
T ss_dssp HHHHHHHHT--SCEEEECTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhC--CCEEEecCCCCcCHHHHHHHHHHHHh
Confidence 111111111 11256899999999999999888764
No 51
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.57 E-value=3.7e-15 Score=129.14 Aligned_cols=149 Identities=23% Similarity=0.337 Sum_probs=102.6
Q ss_pred CcEEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCCcCCC
Q 018241 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA 135 (359)
Q Consensus 56 ~~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~~~~ 135 (359)
.++|+++|.+|||||||+|+|++. ...++.+|++|.+...+.+.+. +..+.+|||||.....
T Consensus 7 ~~~i~lvG~~gvGKStL~~~l~~~-~~~~~~~~~~t~~~~~~~~~~~-----------------~~~~~l~Dt~G~~~~~ 68 (188)
T 2wjg_A 7 SYEIALIGNPNVGKSTIFNALTGE-NVYIGNWPGVTVEKKEGEFEYN-----------------GEKFKVVDLPGVYSLT 68 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTT-CEEEEECTTSCCEEEEEEEEET-----------------TEEEEEEECCCCSCCS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC-CccccCCCCeeccceEEEEEeC-----------------CcEEEEEECCCcCccc
Confidence 379999999999999999999954 4566788999988888888765 3579999999997654
Q ss_pred CcC--cchhhhHhhHHHhcccceEEeecCC--------------CccEEEeCCcccCCcchHHHHhhhhhccHHHHHHHH
Q 018241 136 SQG--EGLGNKFLSHIREVDSILQVVRCFE--------------DNDIVHVNGKVDPKSDVDVINLELVFSDLDQIEKRM 199 (359)
Q Consensus 136 ~~~--~~~~~~~l~~i~~aD~il~Vvd~~~--------------~~~v~~v~nk~d~~~~~~~i~~el~~~d~~~l~~~~ 199 (359)
... +.+...++.. ..+|++++|+|++. +.+++.+.||+|....... ......+.+.+
T Consensus 69 ~~~~~~~~~~~~~~~-~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~------~~~~~~~~~~~ 141 (188)
T 2wjg_A 69 ANSIDEIIARDYIIN-EKPDLVVNIVDATALERNLYLTLQLMEMGANLLLALNKMDLAKSLGI------EIDVDKLEKIL 141 (188)
T ss_dssp SSSHHHHHHHHHHHH-HCCSEEEEEEEGGGHHHHHHHHHHHHTTTCCEEEEEECHHHHHHTTC------CCCHHHHHHHH
T ss_pred cccHHHHHHHHHHhc-cCCCEEEEEecchhHHHHHHHHHHHHhcCCCEEEEEEhhhccccccc------hHHHHHHHHHh
Confidence 311 1122222211 35999999999865 3468889999986422110 01222222211
Q ss_pred HHHhhhccccccchhhHHHHHHHHHHHHHHhcCCC
Q 018241 200 EKLKKGKAKDSQSKLKEDAEKAALEKIQQALMDGK 234 (359)
Q Consensus 200 ~~~~~~~~~~~~Sa~~~~~~~~ll~~i~~~L~~~~ 234 (359)
. .....+||+.+.++.++++.+.+.+.+..
T Consensus 142 ---~--~~~~~~Sa~~~~~v~~l~~~i~~~~~~~~ 171 (188)
T 2wjg_A 142 ---G--VKVVPLSAAKKMGIEELKKAISIAVKDKK 171 (188)
T ss_dssp ---T--SCEEECBGGGTBSHHHHHHHHHHHHTTC-
T ss_pred ---C--CCeEEEEecCCCCHHHHHHHHHHHHHhcc
Confidence 1 11146899999999999999999987643
No 52
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.57 E-value=6.8e-15 Score=130.02 Aligned_cols=145 Identities=18% Similarity=0.170 Sum_probs=94.9
Q ss_pred ccCCcEEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCCc
Q 018241 53 ISMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLV 132 (359)
Q Consensus 53 ~~~~~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~ 132 (359)
....++|+++|.+|||||||+|+|++.. ......|.++.+.....+.+++. ...+.||||||..
T Consensus 17 ~~~~~~i~v~G~~~~GKSsli~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~l~Dt~G~~ 80 (213)
T 3cph_A 17 YDSIMKILLIGDSGVGKSCLLVRFVEDK-FNPSFITTIGIDFKIKTVDINGK---------------KVKLQLWDTAGQE 80 (213)
T ss_dssp ---CEEEEEECSTTSSHHHHHHHHHHCC-CCCSSSCCCSCCEEEEEEEETTE---------------EEEEEEECCTTGG
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHhCC-CCcccCCcccceEEEEEEEECCE---------------EEEEEEEeCCCcH
Confidence 3456899999999999999999999544 33445565665565555655432 1469999999975
Q ss_pred CCCCcCcchhhhHhhHHHhcccceEEeecCC--------------------CccEEEeCCcccCCcchHHHHhhhhhccH
Q 018241 133 KGASQGEGLGNKFLSHIREVDSILQVVRCFE--------------------DNDIVHVNGKVDPKSDVDVINLELVFSDL 192 (359)
Q Consensus 133 ~~~~~~~~~~~~~l~~i~~aD~il~Vvd~~~--------------------~~~v~~v~nk~d~~~~~~~i~~el~~~d~ 192 (359)
.... .....++.+|++++|+|+++ +.+++.+.||+|.... ....
T Consensus 81 ~~~~-------~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~-~~~~-------- 144 (213)
T 3cph_A 81 RFRT-------ITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETR-VVTA-------- 144 (213)
T ss_dssp GGTC-------CCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTTTCSEEEEEEECTTCSSC-CSCH--------
T ss_pred HHHH-------HHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccc-ccCH--------
Confidence 4433 34556788999999999876 2357889999997321 1100
Q ss_pred HHHHHHHHHHhhhccccccchhhHHHHHHHHHHHHHHhc
Q 018241 193 DQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALM 231 (359)
Q Consensus 193 ~~l~~~~~~~~~~~~~~~~Sa~~~~~~~~ll~~i~~~L~ 231 (359)
+.......... .....+||+.+.++.++++.+.+.+.
T Consensus 145 ~~~~~~~~~~~--~~~~~~Sa~~~~gi~~l~~~l~~~~~ 181 (213)
T 3cph_A 145 DQGEALAKELG--IPFIESSAKNDDNVNEIFFTLAKLIQ 181 (213)
T ss_dssp HHHHHHHHHHT--CCEEECBTTTTBSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHcC--CEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 11111111111 11256789999898888888777664
No 53
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.56 E-value=1.3e-14 Score=125.90 Aligned_cols=143 Identities=20% Similarity=0.189 Sum_probs=91.6
Q ss_pred CCcEEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCCcCC
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~~~ 134 (359)
..++|+++|.+|||||||+|+|+++...... .|.......+.+. +..+.+|||||..+.
T Consensus 15 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~----~t~~~~~~~~~~~-----------------~~~~~i~Dt~G~~~~ 73 (187)
T 1zj6_A 15 QEHKVIIVGLDNAGKTTILYQFSMNEVVHTS----PTIGSNVEEIVIN-----------------NTRFLMWDIGGQESL 73 (187)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHHTTSCEEEE----CCSCSSCEEEEET-----------------TEEEEEEECCC----
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCcCc----CCCccceEEEEEC-----------------CEEEEEEECCCCHhH
Confidence 4689999999999999999999965543222 2333333444443 367999999999654
Q ss_pred CCcCcchhhhHhhHHHhcccceEEeecCCC---------------------ccEEEeCCcccCCcchHHHHhhhhhccHH
Q 018241 135 ASQGEGLGNKFLSHIREVDSILQVVRCFED---------------------NDIVHVNGKVDPKSDVDVINLELVFSDLD 193 (359)
Q Consensus 135 ~~~~~~~~~~~l~~i~~aD~il~Vvd~~~~---------------------~~v~~v~nk~d~~~~~~~i~~el~~~d~~ 193 (359)
.. .....++++|++++|+|+++. .+++.+.||+|...+.. .+
T Consensus 74 ~~-------~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~----------~~ 136 (187)
T 1zj6_A 74 RS-------SWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMT----------VA 136 (187)
T ss_dssp CG-------GGHHHHTTCCEEEEEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCC----------HH
T ss_pred HH-------HHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhchhhCCCeEEEEEECCCCcCCCC----------HH
Confidence 33 334567889999999998763 35788999999764311 01
Q ss_pred HHHHHHHH--Hhh-hccccccchhhHHHHHHHHHHHHHHhcCCCC
Q 018241 194 QIEKRMEK--LKK-GKAKDSQSKLKEDAEKAALEKIQQALMDGKP 235 (359)
Q Consensus 194 ~l~~~~~~--~~~-~~~~~~~Sa~~~~~~~~ll~~i~~~L~~~~~ 235 (359)
.+...... +.. ......+||+++.++.++++.+.+.+....+
T Consensus 137 ~i~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~~~ 181 (187)
T 1zj6_A 137 EISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSRLKIRLE 181 (187)
T ss_dssp HHHHHHTGGGCCSSCEEEEECBTTTTBTHHHHHHHHHHHHCC---
T ss_pred HHHHHhChhhhcCCCcEEEEccCCCCcCHHHHHHHHHHHHHHHhh
Confidence 11111110 000 0111468999999999999999999865443
No 54
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.56 E-value=9.2e-15 Score=123.78 Aligned_cols=146 Identities=20% Similarity=0.115 Sum_probs=91.8
Q ss_pred CcEEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCCcCCC
Q 018241 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA 135 (359)
Q Consensus 56 ~~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~~~~ 135 (359)
.++|+++|.+|||||||+|+|+++... ....|..+.+.....+.+++. ...+.+|||||.....
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~D~~G~~~~~ 66 (170)
T 1ek0_A 3 SIKLVLLGEAAVGKSSIVLRFVSNDFA-ENKEPTIGAAFLTQRVTINEH---------------TVKFEIWDTAGQERFA 66 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCC-TTCCCCSSEEEEEEEEEETTE---------------EEEEEEEEECCSGGGG
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCC-CCCCCccceeEEEEEEEECCE---------------EEEEEEEECCCChhhh
Confidence 369999999999999999999965433 222333333333444444321 2469999999975332
Q ss_pred CcCcchhhhHhhHHHhcccceEEeecCCC--------------------ccEEEeCCcccCCcchHHHHhhhhhccHHHH
Q 018241 136 SQGEGLGNKFLSHIREVDSILQVVRCFED--------------------NDIVHVNGKVDPKSDVDVINLELVFSDLDQI 195 (359)
Q Consensus 136 ~~~~~~~~~~l~~i~~aD~il~Vvd~~~~--------------------~~v~~v~nk~d~~~~~~~i~~el~~~d~~~l 195 (359)
. .....++++|++++|+|+++. .+++.+.||+|...+... .+. ..+..
T Consensus 67 ~-------~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~--~~v---~~~~~ 134 (170)
T 1ek0_A 67 S-------LAPXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDXLQEGGE--RKV---AREEG 134 (170)
T ss_dssp G-------GHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGSSCC--CCS---CHHHH
T ss_pred h-------hhhhhhccCcEEEEEEecCChHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCccccccc--cCC---CHHHH
Confidence 2 445667899999999998762 357789999997643100 000 00111
Q ss_pred HHHHHHHhhhccccccchhhHHHHHHHHHHHHHHhc
Q 018241 196 EKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALM 231 (359)
Q Consensus 196 ~~~~~~~~~~~~~~~~Sa~~~~~~~~ll~~i~~~L~ 231 (359)
+....... .....+||+.+.++.++++.+.+.+.
T Consensus 135 ~~~~~~~~--~~~~~~Sa~~~~gi~~l~~~l~~~i~ 168 (170)
T 1ek0_A 135 EKLAEEKG--LLFFETSAKTGENVNDVFLGIGEKIP 168 (170)
T ss_dssp HHHHHHHT--CEEEECCTTTCTTHHHHHHHHHTTSC
T ss_pred HHHHHHcC--CEEEEEeCCCCCCHHHHHHHHHHHHh
Confidence 11111111 11146799999999999998887664
No 55
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=99.56 E-value=1.5e-14 Score=123.95 Aligned_cols=143 Identities=20% Similarity=0.146 Sum_probs=94.9
Q ss_pred CcEEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCCcCCC
Q 018241 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA 135 (359)
Q Consensus 56 ~~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~~~~ 135 (359)
.++|+++|.+|||||||+|+|++... ...++.++.......+.+++. ...+.+|||||..+..
T Consensus 9 ~~~i~v~G~~~~GKssli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~---------------~~~~~~~Dt~G~~~~~ 71 (181)
T 2fn4_A 9 THKLVVVGGGGVGKSALTIQFIQSYF--VSDYDPTIEDSYTKICSVDGI---------------PARLDILDTAGQEEFG 71 (181)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSSC--CSSCCTTCCEEEEEEEEETTE---------------EEEEEEEECCCTTTTS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCcC--ccccCCCcCceEEEEEEECCE---------------EEEEEEEECCCchhhH
Confidence 47999999999999999999996533 345555665554444544431 2468999999986543
Q ss_pred CcCcchhhhHhhHHHhcccceEEeecCC---------------------CccEEEeCCcccCCcchHHHHhhhhhccHHH
Q 018241 136 SQGEGLGNKFLSHIREVDSILQVVRCFE---------------------DNDIVHVNGKVDPKSDVDVINLELVFSDLDQ 194 (359)
Q Consensus 136 ~~~~~~~~~~l~~i~~aD~il~Vvd~~~---------------------~~~v~~v~nk~d~~~~~~~i~~el~~~d~~~ 194 (359)
. .....++.+|++++|+|+++ +.+++.+.||+|...+..... +.
T Consensus 72 ~-------~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~--------~~ 136 (181)
T 2fn4_A 72 A-------MREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPR--------SE 136 (181)
T ss_dssp C-------CHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGCCSCH--------HH
T ss_pred H-------HHHHHHhhCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCH--------HH
Confidence 3 23455678999999999876 235789999999754321101 11
Q ss_pred HHHHHHHHhhhccccccchhhHHHHHHHHHHHHHHhcC
Q 018241 195 IEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMD 232 (359)
Q Consensus 195 l~~~~~~~~~~~~~~~~Sa~~~~~~~~ll~~i~~~L~~ 232 (359)
........ ......+||+.+.++.++++.+.+.+.+
T Consensus 137 ~~~~~~~~--~~~~~~~Sa~~~~gv~~l~~~l~~~~~~ 172 (181)
T 2fn4_A 137 ASAFGASH--HVAYFEASAKLRLNVDEAFEQLVRAVRK 172 (181)
T ss_dssp HHHHHHHT--TCEEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred HHHHHHHc--CCeEEEecCCCCCCHHHHHHHHHHHHHH
Confidence 11111111 1111468999999999999988877743
No 56
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.56 E-value=1.4e-14 Score=128.08 Aligned_cols=152 Identities=19% Similarity=0.181 Sum_probs=94.6
Q ss_pred cCCcEEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCCcC
Q 018241 54 SMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVK 133 (359)
Q Consensus 54 ~~~~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~~ 133 (359)
...++|+++|.+|||||||+|+++++.. ...++.++.+.....+.+.+. ...+.+|||||...
T Consensus 28 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~---------------~~~l~i~Dt~G~~~ 90 (204)
T 4gzl_A 28 GQAIKCVVVGDGAVGKTCLLISYTTNAF--PGEYIPTVFDNYSANVMVDGK---------------PVNLGLWDTAGLED 90 (204)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHHSCC--CC-CCCCSEEEEEEEEECC-C---------------EEEEEEEEECCSGG
T ss_pred CCeEEEEEECcCCCCHHHHHHHHHhCCC--CCCcCCeecceeEEEEEECCE---------------EEEEEEEECCCchh
Confidence 3468999999999999999999995543 234455554444444444432 24577999999854
Q ss_pred CCCcCcchhhhHhhHHHhcccceEEeecCC--------------------CccEEEeCCcccCCcchHHHHh--hhhh--
Q 018241 134 GASQGEGLGNKFLSHIREVDSILQVVRCFE--------------------DNDIVHVNGKVDPKSDVDVINL--ELVF-- 189 (359)
Q Consensus 134 ~~~~~~~~~~~~l~~i~~aD~il~Vvd~~~--------------------~~~v~~v~nk~d~~~~~~~i~~--el~~-- 189 (359)
... .....++.+|++++|+|+++ +.+++.+.||+|...+....+. +...
T Consensus 91 ~~~-------~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~ 163 (204)
T 4gzl_A 91 YDR-------LRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTP 163 (204)
T ss_dssp GTT-------TGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECHHHHTCHHHHHHHHHTTCCC
T ss_pred hHH-------HHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhccchhhhhhhhcccccc
Confidence 433 33446688999999999876 2467899999997654432211 1111
Q ss_pred ccHHHHHHHHHHHhhhccccccchhhHHHHHHHHHHHHHHh
Q 018241 190 SDLDQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQAL 230 (359)
Q Consensus 190 ~d~~~l~~~~~~~~~~~~~~~~Sa~~~~~~~~ll~~i~~~L 230 (359)
...+........... .....+||+++.++.++++.+.+.+
T Consensus 164 v~~~~~~~~~~~~~~-~~~~~~SA~~g~gi~~l~~~l~~~~ 203 (204)
T 4gzl_A 164 ITYPQGLAMAKEIGA-VKYLECSALTQRGLKTVFDEAIRAV 203 (204)
T ss_dssp CCHHHHHHHHHHTTC-SEEEECCTTTCTTHHHHHHHHHHTT
T ss_pred ccHHHHHHHHHhcCC-cEEEEeeCCCCCCHHHHHHHHHHHh
Confidence 111111221111111 1114679999999999998887653
No 57
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=99.56 E-value=1.4e-14 Score=122.99 Aligned_cols=144 Identities=14% Similarity=0.120 Sum_probs=90.8
Q ss_pred CCcEEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCCcCC
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~~~ 134 (359)
..++|+++|.+|||||||+|+|++... .....|..+.+.....+.+.+. ...+.+|||||..+.
T Consensus 5 ~~~~i~v~G~~~~GKssli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~---------------~~~l~i~Dt~G~~~~ 68 (170)
T 1z08_A 5 YSFKVVLLGEGCVGKTSLVLRYCENKF-NDKHITTLGASFLTKKLNIGGK---------------RVNLAIWDTAGQERF 68 (170)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHHHCCC-CSSCCCCCSCEEEEEEEESSSC---------------EEEEEEEECCCC---
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCC-CcCCCCccceEEEEEEEEECCE---------------EEEEEEEECCCcHhh
Confidence 347999999999999999999995543 2333444443344444544432 246899999997544
Q ss_pred CCcCcchhhhHhhHHHhcccceEEeecCCC--------------------ccEEEeCCcccCCcchHHHHhhhhhccHHH
Q 018241 135 ASQGEGLGNKFLSHIREVDSILQVVRCFED--------------------NDIVHVNGKVDPKSDVDVINLELVFSDLDQ 194 (359)
Q Consensus 135 ~~~~~~~~~~~l~~i~~aD~il~Vvd~~~~--------------------~~v~~v~nk~d~~~~~~~i~~el~~~d~~~ 194 (359)
.. .....++++|++++|+|+++. .+++.+.||+|...+... ..+.
T Consensus 69 ~~-------~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~--------~~~~ 133 (170)
T 1z08_A 69 HA-------LGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKERHV--------SIQE 133 (170)
T ss_dssp -----------CCSSTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHGGGSEEEEEEECGGGGGGCCS--------CHHH
T ss_pred hh-------hHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECccccccccc--------CHHH
Confidence 33 223345789999999998762 357889999997643211 1111
Q ss_pred HHHHHHHHhhhccccccchhhHHHHHHHHHHHHHHhc
Q 018241 195 IEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALM 231 (359)
Q Consensus 195 l~~~~~~~~~~~~~~~~Sa~~~~~~~~ll~~i~~~L~ 231 (359)
......... .....+||+.+.++.++++.+.+.+.
T Consensus 134 ~~~~~~~~~--~~~~~~Sa~~~~gi~~l~~~l~~~~~ 168 (170)
T 1z08_A 134 AESYAESVG--AKHYHTSAKQNKGIEELFLDLCKRMI 168 (170)
T ss_dssp HHHHHHHTT--CEEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred HHHHHHHcC--CeEEEecCCCCCCHHHHHHHHHHHHh
Confidence 112111111 11256899999999999999988774
No 58
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=99.56 E-value=1.9e-14 Score=125.38 Aligned_cols=158 Identities=16% Similarity=0.123 Sum_probs=93.6
Q ss_pred CCcEEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCCCccc---------hhcc-------------c
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLH---------VLSG-------------L 112 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~~r~~---------~l~~-------------~ 112 (359)
..++|+++|.+|||||||+|+|++.... ....|.++.+.....+.+++.... .+.. .
T Consensus 6 ~~~ki~v~G~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (208)
T 3clv_A 6 SSYKTVLLGESSVGKSSIVLRLTKDTFH-ENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITNQHN 84 (208)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHSCCC-SSCCCCCSCEEEEEEEETTC-------------------------------
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCcCC-CCcCccccceeEEEEEEecCccccccccccccccccccccccccccccccc
Confidence 4589999999999999999999965433 223333333333333444321100 0000 0
Q ss_pred cccccccCceEEEEecCCCcCCCCcCcchhhhHhhHHHhcccceEEeecCCC------------------ccEEEeCCcc
Q 018241 113 SKSQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFED------------------NDIVHVNGKV 174 (359)
Q Consensus 113 ~~~~~~~~~~i~lvDtpG~~~~~~~~~~~~~~~l~~i~~aD~il~Vvd~~~~------------------~~v~~v~nk~ 174 (359)
..+.......+.||||||...... .....++.+|++++|+|+++. .+++.+.||+
T Consensus 85 ~~~~~~~~~~~~i~Dt~G~~~~~~-------~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~piilv~NK~ 157 (208)
T 3clv_A 85 NYNENLCNIKFDIWDTAGQERYAS-------IVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISSNYIIILVANKI 157 (208)
T ss_dssp CCCTTTCEEEEEEEECTTGGGCTT-------THHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCCEEEEEEECT
T ss_pred cccCccceeEEEEEECCCcHHHHH-------HHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhCCCcEEEEEECC
Confidence 000011115799999999755433 445667899999999998772 3678999999
Q ss_pred cCCcchHHHHhhhhhccHHHHHHHHHHHhhhccccccchhhHHHHHHHHHHHHHHhc
Q 018241 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALM 231 (359)
Q Consensus 175 d~~~~~~~i~~el~~~d~~~l~~~~~~~~~~~~~~~~Sa~~~~~~~~ll~~i~~~L~ 231 (359)
| ..+... ..+.+.+...... .....+||+.+.++.++++.+.+.+.
T Consensus 158 D-~~~~~~--------~~~~~~~~~~~~~--~~~~~~Sa~~~~~i~~l~~~l~~~~~ 203 (208)
T 3clv_A 158 D-KNKFQV--------DILEVQKYAQDNN--LLFIQTSAKTGTNIKNIFYMLAEEIY 203 (208)
T ss_dssp T-CC-CCS--------CHHHHHHHHHHTT--CEEEEECTTTCTTHHHHHHHHHHHHH
T ss_pred C-cccccC--------CHHHHHHHHHHcC--CcEEEEecCCCCCHHHHHHHHHHHHH
Confidence 9 422111 1111222222111 11157899999999999988877663
No 59
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=99.56 E-value=1.4e-14 Score=122.30 Aligned_cols=142 Identities=15% Similarity=0.145 Sum_probs=92.4
Q ss_pred CcEEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCCcCCC
Q 018241 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA 135 (359)
Q Consensus 56 ~~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~~~~ 135 (359)
.++|+++|.+|||||||+|+|+++.. ...++.++.......+.+.+. ...+.+|||||..+..
T Consensus 4 ~~~i~v~G~~~~GKssl~~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~---------------~~~~~l~D~~G~~~~~ 66 (168)
T 1u8z_A 4 LHKVIMVGSGGVGKSALTLQFMYDEF--VEDYEPTKADSYRKKVVLDGE---------------EVQIDILDTAGQEDYA 66 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCC--CSCCCTTCCEEEEEEEEETTE---------------EEEEEEEECCC---CH
T ss_pred eEEEEEECCCCCCHHHHHHHHHhCcc--CCCCCCCcceEEEEEEEECCE---------------EEEEEEEECCCcchhH
Confidence 37999999999999999999996553 234444554444444444321 2468999999975432
Q ss_pred CcCcchhhhHhhHHHhcccceEEeecCC---------------------CccEEEeCCcccCCcchHHHHhhhhhccHHH
Q 018241 136 SQGEGLGNKFLSHIREVDSILQVVRCFE---------------------DNDIVHVNGKVDPKSDVDVINLELVFSDLDQ 194 (359)
Q Consensus 136 ~~~~~~~~~~l~~i~~aD~il~Vvd~~~---------------------~~~v~~v~nk~d~~~~~~~i~~el~~~d~~~ 194 (359)
. .....++.+|++++|+|+++ +.+++.+.||+|...+.+. ..+.
T Consensus 67 ~-------~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~--------~~~~ 131 (168)
T 1u8z_A 67 A-------IRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQV--------SVEE 131 (168)
T ss_dssp H-------HHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGCCS--------CHHH
T ss_pred H-------HHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccccccCcc--------CHHH
Confidence 2 44556788999999999886 3468899999997543211 1111
Q ss_pred HHHHHHHHhhhccccccchhhHHHHHHHHHHHHHHhc
Q 018241 195 IEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALM 231 (359)
Q Consensus 195 l~~~~~~~~~~~~~~~~Sa~~~~~~~~ll~~i~~~L~ 231 (359)
......... .....+||+.+.++.++++.+.+.+.
T Consensus 132 ~~~~~~~~~--~~~~~~Sa~~~~gi~~l~~~l~~~i~ 166 (168)
T 1u8z_A 132 AKNRADQWN--VNYVETSAKTRANVDKVFFDLMREIR 166 (168)
T ss_dssp HHHHHHHHT--CEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHcC--CeEEEeCCCCCCCHHHHHHHHHHHHH
Confidence 111111111 11146799999999999998887764
No 60
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=99.56 E-value=2.7e-14 Score=125.24 Aligned_cols=153 Identities=19% Similarity=0.176 Sum_probs=93.3
Q ss_pred ccCCcEEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCCc
Q 018241 53 ISMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLV 132 (359)
Q Consensus 53 ~~~~~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~ 132 (359)
....++|+++|.+|||||||+|+|++.. ....++.|+.+.....+.+.+. ...+.+|||||..
T Consensus 17 ~~~~~ki~~~G~~~~GKssl~~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~---------------~~~~~i~Dt~G~~ 79 (201)
T 2q3h_A 17 EGRGVKCVLVGDGAVGKTSLVVSYTTNG--YPTEYIPTAFDNFSAVVSVDGR---------------PVRLQLCDTAGQD 79 (201)
T ss_dssp ---CEEEEEECSTTSSHHHHHHHHHC----------CCSSEEEEEEEEETTE---------------EEEEEEEECCCST
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHhCC--CCCCCCCcccceeEEEEEECCE---------------EEEEEEEECCCCH
Confidence 3456899999999999999999999554 2345556665555444544421 2467899999996
Q ss_pred CCCCcCcchhhhHhhHHHhcccceEEeecCC--------------------CccEEEeCCcccCCcchHHHHhhhh----
Q 018241 133 KGASQGEGLGNKFLSHIREVDSILQVVRCFE--------------------DNDIVHVNGKVDPKSDVDVINLELV---- 188 (359)
Q Consensus 133 ~~~~~~~~~~~~~l~~i~~aD~il~Vvd~~~--------------------~~~v~~v~nk~d~~~~~~~i~~el~---- 188 (359)
.... .....++++|++++|+|+++ +.+++.+.||+|...+...... +.
T Consensus 80 ~~~~-------~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~-~~~~~~ 151 (201)
T 2q3h_A 80 EFDK-------LRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHCPKAPIILVGTQSDLREDVKVLIE-LDKCKE 151 (201)
T ss_dssp TCSS-------SGGGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSSCEEEEEECGGGGGCHHHHHH-HHTTTC
T ss_pred HHHH-------HhHhhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhhchhhhhh-hccccc
Confidence 5543 22345678999999999876 2357889999997754322111 10
Q ss_pred -hccHHHHHHHHHHHhhhccccccchhhHHHHHHHHHHHHHHhc
Q 018241 189 -FSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALM 231 (359)
Q Consensus 189 -~~d~~~l~~~~~~~~~~~~~~~~Sa~~~~~~~~ll~~i~~~L~ 231 (359)
....+.......... ......+||+.+.++.++++.+.+.+.
T Consensus 152 ~~v~~~~~~~~~~~~~-~~~~~~~Sa~~g~gi~~l~~~l~~~~~ 194 (201)
T 2q3h_A 152 KPVPEEAAKLLAEEIK-AASYIECSALTQKNLKEVFDAAIVAGI 194 (201)
T ss_dssp CCCCHHHHHHHHHHHT-CSEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHhcC-CcEEEEEecCCCCCHHHHHHHHHHHHh
Confidence 111111222111111 111246799999999999988877763
No 61
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=99.56 E-value=1.9e-14 Score=125.14 Aligned_cols=148 Identities=19% Similarity=0.151 Sum_probs=95.8
Q ss_pred CcEEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCCcCCC
Q 018241 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA 135 (359)
Q Consensus 56 ~~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~~~~ 135 (359)
.++|+++|.+|||||||+|+|++.... ....|..+.+.....+.+.+. ...+.||||||.....
T Consensus 15 ~~~i~v~G~~~~GKssli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~---------------~~~~~i~Dt~G~~~~~ 78 (195)
T 1x3s_A 15 TLKILIIGESGVGKSSLLLRFTDDTFD-PELAATIGVDFKVKTISVDGN---------------KAKLAIWDTAGQERFR 78 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCC-TTCCCCCSEEEEEEEEEETTE---------------EEEEEEEEECSSGGGC
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCC-ccCCCccceEEEEEEEEECCe---------------EEEEEEEeCCCchhhh
Confidence 479999999999999999999955432 223333333343444444321 2569999999975443
Q ss_pred CcCcchhhhHhhHHHhcccceEEeecCCC---------------------ccEEEeCCcccCCcchHHHHhhhhhccHHH
Q 018241 136 SQGEGLGNKFLSHIREVDSILQVVRCFED---------------------NDIVHVNGKVDPKSDVDVINLELVFSDLDQ 194 (359)
Q Consensus 136 ~~~~~~~~~~l~~i~~aD~il~Vvd~~~~---------------------~~v~~v~nk~d~~~~~~~i~~el~~~d~~~ 194 (359)
. .....++.+|++++|+|+++. .+++.+.||+|.... .. ..+.
T Consensus 79 ~-------~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~-~~--------~~~~ 142 (195)
T 1x3s_A 79 T-------LTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKENR-EV--------DRNE 142 (195)
T ss_dssp C-------SHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSSSC-CS--------CHHH
T ss_pred h-------hhHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCcEEEEEECCcCccc-cc--------CHHH
Confidence 3 345567899999999998762 356789999997421 11 0011
Q ss_pred HHHHHHHHhhhccccccchhhHHHHHHHHHHHHHHhcCCCCCC
Q 018241 195 IEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMDGKPAR 237 (359)
Q Consensus 195 l~~~~~~~~~~~~~~~~Sa~~~~~~~~ll~~i~~~L~~~~~~~ 237 (359)
......... .....+||+.+.++.++++.+.+.+.+.+.++
T Consensus 143 ~~~~~~~~~--~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~~~~ 183 (195)
T 1x3s_A 143 GLKFARKHS--MLFIEASAKTCDGVQCAFEELVEKIIQTPGLW 183 (195)
T ss_dssp HHHHHHHTT--CEEEECCTTTCTTHHHHHHHHHHHHHTSGGGT
T ss_pred HHHHHHHcC--CEEEEecCCCCCCHHHHHHHHHHHHHhhhhhh
Confidence 111111111 11146799999999999999999887654443
No 62
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=99.55 E-value=1e-14 Score=123.37 Aligned_cols=144 Identities=16% Similarity=0.112 Sum_probs=93.6
Q ss_pred CCcEEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCCcCC
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~~~ 134 (359)
..++|+++|.+|||||||+|+|+++.. .....|..+.+.....+.+++. ...+.+|||||....
T Consensus 4 ~~~~i~v~G~~~~GKssl~~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~---------------~~~~~l~Dt~G~~~~ 67 (168)
T 1z2a_A 4 VAIKMVVVGNGAVGKSSMIQRYCKGIF-TKDYKKTIGVDFLERQIQVNDE---------------DVRLMLWDTAGQEEF 67 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHCCC-CCCSSCCCSSSEEEEEEEETTE---------------EEEEEEECCTTGGGT
T ss_pred eeEEEEEECcCCCCHHHHHHHHHcCCC-CCCCCCceEEEEEEEEEEECCE---------------EEEEEEEcCCCcHhH
Confidence 357999999999999999999995543 2223333334444444544421 246999999997644
Q ss_pred CCcCcchhhhHhhHHHhcccceEEeecCC-------------------CccEEEeCCcccCCcchHHHHhhhhhccHHHH
Q 018241 135 ASQGEGLGNKFLSHIREVDSILQVVRCFE-------------------DNDIVHVNGKVDPKSDVDVINLELVFSDLDQI 195 (359)
Q Consensus 135 ~~~~~~~~~~~l~~i~~aD~il~Vvd~~~-------------------~~~v~~v~nk~d~~~~~~~i~~el~~~d~~~l 195 (359)
.. .....++.+|++++|+|+++ +.+++.+.||+|...+..... +.+
T Consensus 68 ~~-------~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~--------~~~ 132 (168)
T 1z2a_A 68 DA-------ITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVGDIPTALVQNKIDLLDDSCIKN--------EEA 132 (168)
T ss_dssp TC-------CCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCSCCEEEEEECGGGGGGCSSCH--------HHH
T ss_pred HH-------HHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccCcccccCH--------HHH
Confidence 33 33456688999999999876 236788999999764321101 111
Q ss_pred HHHHHHHhhhccccccchhhHHHHHHHHHHHHHHhc
Q 018241 196 EKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALM 231 (359)
Q Consensus 196 ~~~~~~~~~~~~~~~~Sa~~~~~~~~ll~~i~~~L~ 231 (359)
+....... .....+||+.+.++.++++.+.+.+.
T Consensus 133 ~~~~~~~~--~~~~~~Sa~~~~~i~~l~~~l~~~~~ 166 (168)
T 1z2a_A 133 EGLAKRLK--LRFYRTSVKEDLNVSEVFKYLAEKHL 166 (168)
T ss_dssp HHHHHHHT--CEEEECBTTTTBSSHHHHHHHHHHHH
T ss_pred HHHHHHcC--CeEEEEecCCCCCHHHHHHHHHHHHh
Confidence 11111111 11256899999999999988887663
No 63
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=99.55 E-value=9.2e-15 Score=125.24 Aligned_cols=146 Identities=13% Similarity=0.122 Sum_probs=95.2
Q ss_pred CCcEEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCCcCC
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~~~ 134 (359)
..++|+++|.+|||||||+|+|+++... ....|.++.+.....+.+++.. ..++.+|||||....
T Consensus 5 ~~~ki~v~G~~~~GKssl~~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~--------------~~~~~~~Dt~G~~~~ 69 (178)
T 2hxs_A 5 RQLKIVVLGDGASGKTSLTTCFAQETFG-KQYKQTIGLDFFLRRITLPGNL--------------NVTLQIWDIGGQTIG 69 (178)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHGGGTT-HHHHHTTTSSEEEEEEEETTTE--------------EEEEEEEECTTCCTT
T ss_pred ceEEEEEECcCCCCHHHHHHHHHhCcCC-CCCCCceeEEEEEEEEEeCCCC--------------EEEEEEEECCCCccc
Confidence 3489999999999999999999965432 1112323344555555555311 257999999998654
Q ss_pred CCcCcchhhhHhhHHHhcccceEEeecCCC----------------------cc-EEEeCCcccCCcchHHHHhhhhhcc
Q 018241 135 ASQGEGLGNKFLSHIREVDSILQVVRCFED----------------------ND-IVHVNGKVDPKSDVDVINLELVFSD 191 (359)
Q Consensus 135 ~~~~~~~~~~~l~~i~~aD~il~Vvd~~~~----------------------~~-v~~v~nk~d~~~~~~~i~~el~~~d 191 (359)
.. .....++++|++++|+|+++. .+ ++.+.||+|...+....
T Consensus 70 ~~-------~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~~~~-------- 134 (178)
T 2hxs_A 70 GK-------MLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRTIK-------- 134 (178)
T ss_dssp CT-------THHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGGGCSSC--------
T ss_pred cc-------hhhHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEccccccccccC--------
Confidence 33 344567899999999998762 12 67899999975321110
Q ss_pred HHHHHHHHHHHhhhccccccchhhHHHHHHHHHHHHHHhcC
Q 018241 192 LDQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMD 232 (359)
Q Consensus 192 ~~~l~~~~~~~~~~~~~~~~Sa~~~~~~~~ll~~i~~~L~~ 232 (359)
.+.......... .....+||+.+.++.++++.+.+.+.+
T Consensus 135 ~~~~~~~~~~~~--~~~~~~Sa~~~~gi~~l~~~l~~~~~~ 173 (178)
T 2hxs_A 135 PEKHLRFCQENG--FSSHFVSAKTGDSVFLCFQKVAAEILG 173 (178)
T ss_dssp HHHHHHHHHHHT--CEEEEECTTTCTTHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcC--CcEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence 011111111111 112568999999999999999988854
No 64
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=99.55 E-value=1.7e-14 Score=127.20 Aligned_cols=145 Identities=17% Similarity=0.125 Sum_probs=97.2
Q ss_pred CCcEEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCCcCC
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~~~ 134 (359)
..++|+++|.+|||||||+|+|++... .....|..+.+.....+.+++. ...+.+|||||....
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~---------------~~~~~l~Dt~G~~~~ 70 (206)
T 2bcg_Y 7 YLFKLLLIGNSGVGKSCLLLRFSDDTY-TNDYISTIGVDFKIKTVELDGK---------------TVKLQIWDTAGQERF 70 (206)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHCCC-CTTCCCSSCCCEEEEEEEETTE---------------EEEEEEECCTTTTTT
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCC-CCCCCCcccceeEEEEEEECCE---------------EEEEEEEeCCChHHH
Confidence 347999999999999999999995443 3344555555555555555432 246999999997654
Q ss_pred CCcCcchhhhHhhHHHhcccceEEeecCCC--------------------ccEEEeCCcccCCcchHHHHhhhhhccHHH
Q 018241 135 ASQGEGLGNKFLSHIREVDSILQVVRCFED--------------------NDIVHVNGKVDPKSDVDVINLELVFSDLDQ 194 (359)
Q Consensus 135 ~~~~~~~~~~~l~~i~~aD~il~Vvd~~~~--------------------~~v~~v~nk~d~~~~~~~i~~el~~~d~~~ 194 (359)
.. .....++.+|++++|+|+++. .+++.+.||+|...+..... +.
T Consensus 71 ~~-------~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~--------~~ 135 (206)
T 2bcg_Y 71 RT-------ITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKRVVEY--------DV 135 (206)
T ss_dssp TC-------CCGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCH--------HH
T ss_pred HH-------HHHHhccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCH--------HH
Confidence 43 234556889999999998762 35788999999764321100 11
Q ss_pred HHHHHHHHhhhccccccchhhHHHHHHHHHHHHHHhcC
Q 018241 195 IEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMD 232 (359)
Q Consensus 195 l~~~~~~~~~~~~~~~~Sa~~~~~~~~ll~~i~~~L~~ 232 (359)
........ . .....+||+.+.++.++++.+.+.+.+
T Consensus 136 ~~~~~~~~-~-~~~~~~Sa~~g~gi~~l~~~l~~~i~~ 171 (206)
T 2bcg_Y 136 AKEFADAN-K-MPFLETSALDSTNVEDAFLTMARQIKE 171 (206)
T ss_dssp HHHHHHHT-T-CCEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHc-C-CeEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 11111111 1 112467999999999999999888753
No 65
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=99.55 E-value=2.5e-14 Score=126.66 Aligned_cols=152 Identities=17% Similarity=0.116 Sum_probs=97.4
Q ss_pred CcEEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCCcCCC
Q 018241 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA 135 (359)
Q Consensus 56 ~~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~~~~ 135 (359)
.++|+++|.+|||||||+|+|+++.. ...++.|+.+.....+.+.+. ...+.+|||||.....
T Consensus 9 ~~ki~i~G~~~~GKTsli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~---------------~~~~~i~Dt~G~~~~~ 71 (212)
T 2j0v_A 9 FIKCVTVGDGAVGKTCMLICYTSNKF--PTDYIPTVFDNFSANVAVDGQ---------------IVNLGLWDTAGQEDYS 71 (212)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSCC--CSSCCCSSCCCEEEEEECSSC---------------EEEEEEECCCCCCCCC
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCC--CccCCCccceeEEEEEEECCE---------------EEEEEEEECCCcHHHH
Confidence 47999999999999999999995543 234444554444444444331 2479999999996554
Q ss_pred CcCcchhhhHhhHHHhcccceEEeecCC--------------------CccEEEeCCcccCCcchHHHHhhhhhccHHHH
Q 018241 136 SQGEGLGNKFLSHIREVDSILQVVRCFE--------------------DNDIVHVNGKVDPKSDVDVINLELVFSDLDQI 195 (359)
Q Consensus 136 ~~~~~~~~~~l~~i~~aD~il~Vvd~~~--------------------~~~v~~v~nk~d~~~~~~~i~~el~~~d~~~l 195 (359)
. .....++++|++++|+|+++ +.+++.+.||+|...+......+......+..
T Consensus 72 ~-------~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~v~~~~~ 144 (212)
T 2j0v_A 72 R-------LRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRDDKGYLADHTNVITSTQG 144 (212)
T ss_dssp C---------CGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHTCHHHHHTCSSCCCHHHH
T ss_pred H-------HHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCHHhhhCccccccccCCCCHHHH
Confidence 3 22345688999999999876 23578899999976543321111001111222
Q ss_pred HHHHHHHhhhccccccchhhHHHHHHHHHHHHHHhcC
Q 018241 196 EKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMD 232 (359)
Q Consensus 196 ~~~~~~~~~~~~~~~~Sa~~~~~~~~ll~~i~~~L~~ 232 (359)
+.....+.. .....+||+.+.++.++++.+.+.+.+
T Consensus 145 ~~~~~~~~~-~~~~~~Sa~~g~gi~~l~~~l~~~~~~ 180 (212)
T 2j0v_A 145 EELRKQIGA-AAYIECSSKTQQNVKAVFDTAIKVVLQ 180 (212)
T ss_dssp HHHHHHHTC-SEEEECCTTTCTTHHHHHHHHHHHHHC
T ss_pred HHHHHHcCC-ceEEEccCCCCCCHHHHHHHHHHHHhh
Confidence 221222211 112568999999999999999888854
No 66
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=99.55 E-value=1.2e-14 Score=124.10 Aligned_cols=144 Identities=15% Similarity=0.018 Sum_probs=87.1
Q ss_pred CcEEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCCcCCC
Q 018241 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA 135 (359)
Q Consensus 56 ~~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~~~~ 135 (359)
.++|+++|.+|||||||+|+|++.......+.+++| .....+.+++. ..++.+|||||.....
T Consensus 4 ~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~---------------~~~~~~~D~~g~~~~~ 66 (175)
T 2nzj_A 4 LYRVVLLGDPGVGKTSLASLFAGKQERDLHEQLGED--VYERTLTVDGE---------------DTTLVVVDTWEAEKLD 66 (175)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHCC-----CCCSSSS--EEEEEEEETTE---------------EEEEEEECCC------
T ss_pred EEEEEEECCCCccHHHHHHHHhcCCCccccCccccc--eeEEEEEECCE---------------EEEEEEEecCCCCccc
Confidence 479999999999999999999977666555555554 33334444431 2468999999986421
Q ss_pred CcCcchhhhHhhHHHhcccceEEeecCC---------------------CccEEEeCCcccCCcchHHHHhhhhhccHHH
Q 018241 136 SQGEGLGNKFLSHIREVDSILQVVRCFE---------------------DNDIVHVNGKVDPKSDVDVINLELVFSDLDQ 194 (359)
Q Consensus 136 ~~~~~~~~~~l~~i~~aD~il~Vvd~~~---------------------~~~v~~v~nk~d~~~~~~~i~~el~~~d~~~ 194 (359)
. .. .....++.+|++++|+|+++ +.+++.+.||+|...+...... .
T Consensus 67 ~--~~---~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~piilv~NK~Dl~~~~~v~~~--------~ 133 (175)
T 2nzj_A 67 K--SW---SQESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLARCREVSVE--------E 133 (175)
T ss_dssp ---CH---HHHHTTTSCSEEEEEEETTCHHHHHHHHHHHHHHHHCC----CCEEEEEECTTCTTTCCSCHH--------H
T ss_pred h--hh---hHHhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEChhhccccccCHH--------H
Confidence 1 11 12234577999999999876 2367899999997643211111 1
Q ss_pred HHHHHHHHhhhccccccchhhHHHHHHHHHHHHHHhc
Q 018241 195 IEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALM 231 (359)
Q Consensus 195 l~~~~~~~~~~~~~~~~Sa~~~~~~~~ll~~i~~~L~ 231 (359)
......... .....+||+.+.++.++++.+.+.+.
T Consensus 134 ~~~~~~~~~--~~~~~~Sa~~g~gi~~l~~~l~~~~~ 168 (175)
T 2nzj_A 134 GRACAVVFD--CKFIETSATLQHNVAELFEGVVRQLR 168 (175)
T ss_dssp HHHHHHHHT--SEEEECBTTTTBSHHHHHHHHHHHHH
T ss_pred HHHHHHHcC--CeEEEEecCCCCCHHHHHHHHHHHHH
Confidence 111111111 11256899999999999998887774
No 67
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=99.55 E-value=5.2e-15 Score=129.46 Aligned_cols=145 Identities=17% Similarity=0.197 Sum_probs=91.1
Q ss_pred CCcEEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCCcCC
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~~~ 134 (359)
..++|+++|.+|||||||+|+|++.... ....|..+.+.....+.+.+. ...+.+|||||....
T Consensus 25 ~~~ki~vvG~~~~GKSsLi~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~---------------~~~l~l~Dt~G~~~~ 88 (192)
T 2il1_A 25 FKLQVIIIGSRGVGKTSLMERFTDDTFC-EACKSTVGVDFKIKTVELRGK---------------KIRLQIWDTAGQERF 88 (192)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHCC---------CCTTEEEEEEEEEETTE---------------EEEEEEEEECCSGGG
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCCC-cCCCCccceeEEEEEEEECCe---------------EEEEEEEeCCCcHHH
Confidence 4479999999999999999999955433 223343443444445544431 246999999997432
Q ss_pred CCcCcchhhhHhhHHHhcccceEEeecCC--------------------CccEEEeCCcccCCcchHHHHhhhhhccHHH
Q 018241 135 ASQGEGLGNKFLSHIREVDSILQVVRCFE--------------------DNDIVHVNGKVDPKSDVDVINLELVFSDLDQ 194 (359)
Q Consensus 135 ~~~~~~~~~~~l~~i~~aD~il~Vvd~~~--------------------~~~v~~v~nk~d~~~~~~~i~~el~~~d~~~ 194 (359)
.......++.+|++++|+|+++ +.+++.+.||+|...+.+... +.
T Consensus 89 -------~~~~~~~~~~~d~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~piilV~NK~Dl~~~~~v~~--------~~ 153 (192)
T 2il1_A 89 -------NSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREITR--------QQ 153 (192)
T ss_dssp -------HHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCH--------HH
T ss_pred -------HHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCH--------HH
Confidence 2245567789999999999876 235788999999754321111 11
Q ss_pred HHHHHHHHhhhccccccchhhHHHHHHHHHHHHHHhc
Q 018241 195 IEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALM 231 (359)
Q Consensus 195 l~~~~~~~~~~~~~~~~Sa~~~~~~~~ll~~i~~~L~ 231 (359)
.+.....+.. .....+||+++.++.++++.+.+.+.
T Consensus 154 ~~~~~~~~~~-~~~~~~SA~~g~gi~~l~~~l~~~i~ 189 (192)
T 2il1_A 154 GEKFAQQITG-MRFCEASAKDNFNVDEIFLKLVDDIL 189 (192)
T ss_dssp HHHHHHTSTT-CEEEECBTTTTBSHHHHHHHHHHHHH
T ss_pred HHHHHHhcCC-CeEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 1111111111 11146799999999999998887763
No 68
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=99.55 E-value=1.3e-14 Score=122.94 Aligned_cols=143 Identities=14% Similarity=0.071 Sum_probs=91.7
Q ss_pred CCcEEEEEecCCCChhHHHHHHHhcccc-ccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCCcC
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVVENGKA-QAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVK 133 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~~~~~~-~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~~ 133 (359)
..++|+++|.+|||||||+|+|++.... ...+.++++. ....+.+.+. ...+.+|||||+..
T Consensus 5 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~---------------~~~~~~~Dt~G~~~ 67 (170)
T 1z0j_A 5 RELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASF--MTKTVQYQNE---------------LHKFLIWDTAGLER 67 (170)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEE--EEEEEEETTE---------------EEEEEEEEECCSGG
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEE--EEEEEEECCe---------------EEEEEEEcCCCchh
Confidence 3479999999999999999999966532 2333344432 2222333321 25689999999853
Q ss_pred CCCcCcchhhhHhhHHHhcccceEEeecCCC--------------------ccEEEeCCcccCCcchHHHHhhhhhccHH
Q 018241 134 GASQGEGLGNKFLSHIREVDSILQVVRCFED--------------------NDIVHVNGKVDPKSDVDVINLELVFSDLD 193 (359)
Q Consensus 134 ~~~~~~~~~~~~l~~i~~aD~il~Vvd~~~~--------------------~~v~~v~nk~d~~~~~~~i~~el~~~d~~ 193 (359)
... .....++.+|++++|+|+++. .+++.+.||+|...+.+....
T Consensus 68 ~~~-------~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~v~~~-------- 132 (170)
T 1z0j_A 68 FRA-------LAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDVREVMER-------- 132 (170)
T ss_dssp GGG-------GTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTSEEEEEEECTTCGGGCCSCHH--------
T ss_pred hhc-------ccHhhCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECCccccccccCHH--------
Confidence 322 344567889999999998762 246778899997643211111
Q ss_pred HHHHHHHHHhhhccccccchhhHHHHHHHHHHHHHHhc
Q 018241 194 QIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALM 231 (359)
Q Consensus 194 ~l~~~~~~~~~~~~~~~~Sa~~~~~~~~ll~~i~~~L~ 231 (359)
.......... .....+||+.+.++.++++.+.+.+.
T Consensus 133 ~~~~~~~~~~--~~~~~~Sa~~~~~i~~l~~~i~~~i~ 168 (170)
T 1z0j_A 133 DAKDYADSIH--AIFVETSAKNAININELFIEISRRIP 168 (170)
T ss_dssp HHHHHHHHTT--CEEEECBTTTTBSHHHHHHHHHHHCC
T ss_pred HHHHHHHHcC--CEEEEEeCCCCcCHHHHHHHHHHHHh
Confidence 1111111111 11256899999999999999988774
No 69
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=99.55 E-value=1.6e-14 Score=127.04 Aligned_cols=144 Identities=19% Similarity=0.135 Sum_probs=94.7
Q ss_pred CCcEEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCCcCC
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~~~ 134 (359)
..++|+++|.+|||||||+|+|++.... ....|..+.+.....+.+.+. ...+.+|||||....
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~---------------~~~~~l~Dt~G~~~~ 70 (207)
T 1vg8_A 7 VLLKVIILGDSGVGKTSLMNQYVNKKFS-NQYKATIGADFLTKEVMVDDR---------------LVTMQIWDTAGQERF 70 (207)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCCC-SSCCCCCSEEEEEEEEESSSC---------------EEEEEEEEECSSGGG
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCC-CCCCCcccceEEEEEEEECCE---------------EEEEEEEeCCCcHHH
Confidence 4589999999999999999999955433 333444444455555555432 246999999997544
Q ss_pred CCcCcchhhhHhhHHHhcccceEEeecCCC------------------------ccEEEeCCcccCCcchHHHHhhhhhc
Q 018241 135 ASQGEGLGNKFLSHIREVDSILQVVRCFED------------------------NDIVHVNGKVDPKSDVDVINLELVFS 190 (359)
Q Consensus 135 ~~~~~~~~~~~l~~i~~aD~il~Vvd~~~~------------------------~~v~~v~nk~d~~~~~~~i~~el~~~ 190 (359)
.. .....++.+|++++|+|+++. .+++.+.||+|.... ...
T Consensus 71 ~~-------~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~-~~~------- 135 (207)
T 1vg8_A 71 QS-------LGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENR-QVA------- 135 (207)
T ss_dssp SC-------SCCGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCC-CSC-------
T ss_pred HH-------hHHHHHhCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCccc-ccC-------
Confidence 33 223456789999999998752 257889999997621 110
Q ss_pred cHHHHHHHHHHHhhhccccccchhhHHHHHHHHHHHHHHhc
Q 018241 191 DLDQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALM 231 (359)
Q Consensus 191 d~~~l~~~~~~~~~~~~~~~~Sa~~~~~~~~ll~~i~~~L~ 231 (359)
.+.+...... ........+||+.+.++.++++.+.+.+.
T Consensus 136 -~~~~~~~~~~-~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~ 174 (207)
T 1vg8_A 136 -TKRAQAWCYS-KNNIPYFETSAKEAINVEQAFQTIARNAL 174 (207)
T ss_dssp -HHHHHHHHHH-TTSCCEEECBTTTTBSHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHh-cCCceEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 1111111110 11111257899999999999999988874
No 70
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=99.55 E-value=2.1e-14 Score=122.77 Aligned_cols=144 Identities=18% Similarity=0.131 Sum_probs=92.1
Q ss_pred CCcEEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCCcCC
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~~~ 134 (359)
..++|+++|.+|||||||+|+|++..... ...+..+.+.....+.+++. ...+.+|||||....
T Consensus 14 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~---------------~~~~~l~Dt~G~~~~ 77 (179)
T 1z0f_A 14 YIFKYIIIGDMGVGKSCLLHQFTEKKFMA-DCPHTIGVEFGTRIIEVSGQ---------------KIKLQIWDTAGQERF 77 (179)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCS-SCTTSCCCCEEEEEEEETTE---------------EEEEEEEECTTGGGT
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCC-CCCCccceEEEEEEEEECCe---------------EEEEEEEECCCChHh
Confidence 34899999999999999999999655422 11222222222333333321 246899999997543
Q ss_pred CCcCcchhhhHhhHHHhcccceEEeecCC--------------------CccEEEeCCcccCCcchHHHHhhhhhccHHH
Q 018241 135 ASQGEGLGNKFLSHIREVDSILQVVRCFE--------------------DNDIVHVNGKVDPKSDVDVINLELVFSDLDQ 194 (359)
Q Consensus 135 ~~~~~~~~~~~l~~i~~aD~il~Vvd~~~--------------------~~~v~~v~nk~d~~~~~~~i~~el~~~d~~~ 194 (359)
.. .....++++|++++|+|+++ +.+++.+.||+|...+... ..+.
T Consensus 78 ~~-------~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~--------~~~~ 142 (179)
T 1z0f_A 78 RA-------VTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDV--------TYEE 142 (179)
T ss_dssp CH-------HHHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCS--------CHHH
T ss_pred hh-------hHHHHhccCCEEEEEEeCcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccccccccc--------CHHH
Confidence 32 45667789999999999876 2357889999997532211 1111
Q ss_pred HHHHHHHHhhhccccccchhhHHHHHHHHHHHHHHhc
Q 018241 195 IEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALM 231 (359)
Q Consensus 195 l~~~~~~~~~~~~~~~~Sa~~~~~~~~ll~~i~~~L~ 231 (359)
+........ .....+||+.+.++.++++.+.+.+.
T Consensus 143 ~~~~~~~~~--~~~~~~Sa~~~~gi~~l~~~l~~~i~ 177 (179)
T 1z0f_A 143 AKQFAEENG--LLFLEASAKTGENVEDAFLEAAKKIY 177 (179)
T ss_dssp HHHHHHHTT--CEEEECCTTTCTTHHHHHHHHHHHHC
T ss_pred HHHHHHHcC--CEEEEEeCCCCCCHHHHHHHHHHHHh
Confidence 122111111 11156799999999999998887763
No 71
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=99.55 E-value=1.2e-14 Score=124.75 Aligned_cols=147 Identities=18% Similarity=0.145 Sum_probs=88.2
Q ss_pred CCcEEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCCcCC
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~~~ 134 (359)
..++|+++|.+|||||||+|+|++.... ....|..+.+.....+.+++.. ...+.+|||||....
T Consensus 7 ~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~l~Dt~G~~~~ 71 (182)
T 1ky3_A 7 NILKVIILGDSGVGKTSLMHRYVNDKYS-QQYKATIGADFLTKEVTVDGDK--------------VATMQVWDTAGQERF 71 (182)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCCC-TTC---CCCSCEEEEECCSSSC--------------CEEEEEECCC-----
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCcCC-cccCCccceEEEEEEEEEcCCc--------------EEEEEEEECCCChHh
Confidence 4589999999999999999999955432 3333444445555555444211 357999999997543
Q ss_pred CCcCcchhhhHhhHHHhcccceEEeecCC------------------------CccEEEeCCcccCCcchHHHHhhhhhc
Q 018241 135 ASQGEGLGNKFLSHIREVDSILQVVRCFE------------------------DNDIVHVNGKVDPKSDVDVINLELVFS 190 (359)
Q Consensus 135 ~~~~~~~~~~~l~~i~~aD~il~Vvd~~~------------------------~~~v~~v~nk~d~~~~~~~i~~el~~~ 190 (359)
.. .....++.+|++++|+|+++ +.+++.+.||+|.......+
T Consensus 72 ~~-------~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~v------- 137 (182)
T 1ky3_A 72 QS-------LGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIV------- 137 (182)
T ss_dssp ------------CCSTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCS-------
T ss_pred hh-------hhHHHhhcCCEEEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCccccccccC-------
Confidence 33 33445678999999999875 23678899999975322111
Q ss_pred cHHHHHHHHHHHhhhccccccchhhHHHHHHHHHHHHHHhc
Q 018241 191 DLDQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALM 231 (359)
Q Consensus 191 d~~~l~~~~~~~~~~~~~~~~Sa~~~~~~~~ll~~i~~~L~ 231 (359)
..+.......... ......+||+.+.++.++++.+.+.+.
T Consensus 138 ~~~~~~~~~~~~~-~~~~~~~Sa~~~~gi~~l~~~l~~~~~ 177 (182)
T 1ky3_A 138 SEKSAQELAKSLG-DIPLFLTSAKNAINVDTAFEEIARSAL 177 (182)
T ss_dssp CHHHHHHHHHHTT-SCCEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhcC-CCeEEEEecCCCCCHHHHHHHHHHHHH
Confidence 1111111111111 111156899999999999988877663
No 72
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=99.55 E-value=3e-14 Score=120.59 Aligned_cols=143 Identities=17% Similarity=0.080 Sum_probs=90.2
Q ss_pred CcEEEEEecCCCChhHHHHHHHhcccccc-CCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCCcCC
Q 018241 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQA-ANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (359)
Q Consensus 56 ~~~i~ivG~pn~GKSTL~n~L~~~~~~~~-~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~~~ 134 (359)
.++|+++|.+|||||||+|+|+++..... .+..+++ .....+.+.+. ...+.+|||||....
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~---------------~~~~~~~D~~G~~~~ 68 (170)
T 1r2q_A 6 QFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAA--FLTQTVCLDDT---------------TVKFEIWDTAGQERY 68 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEE--EEEEEEEETTE---------------EEEEEEEEECCSGGG
T ss_pred eEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceE--EEEEEEEECCE---------------EEEEEEEeCCCcHHh
Confidence 47999999999999999999996544322 1222222 22222333321 246999999997543
Q ss_pred CCcCcchhhhHhhHHHhcccceEEeecCCC--------------------ccEEEeCCcccCCcchHHHHhhhhhccHHH
Q 018241 135 ASQGEGLGNKFLSHIREVDSILQVVRCFED--------------------NDIVHVNGKVDPKSDVDVINLELVFSDLDQ 194 (359)
Q Consensus 135 ~~~~~~~~~~~l~~i~~aD~il~Vvd~~~~--------------------~~v~~v~nk~d~~~~~~~i~~el~~~d~~~ 194 (359)
.. .....++.+|++++|+|+++. .+++.+.||+|...+... ..+.
T Consensus 69 ~~-------~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~~~~--------~~~~ 133 (170)
T 1r2q_A 69 HS-------LAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAV--------DFQE 133 (170)
T ss_dssp GG-------GHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCS--------CHHH
T ss_pred hh-------hhHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCcccccc--------CHHH
Confidence 22 345667889999999998762 246777899996532111 1111
Q ss_pred HHHHHHHHhhhccccccchhhHHHHHHHHHHHHHHhcC
Q 018241 195 IEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMD 232 (359)
Q Consensus 195 l~~~~~~~~~~~~~~~~Sa~~~~~~~~ll~~i~~~L~~ 232 (359)
......... .....+||+.+.++.++++.+.+.+++
T Consensus 134 ~~~~~~~~~--~~~~~~Sa~~g~gi~~l~~~i~~~~~~ 169 (170)
T 1r2q_A 134 AQSYADDNS--LLFMETSAKTSMNVNEIFMAIAKKLPK 169 (170)
T ss_dssp HHHHHHHTT--CEEEECCTTTCTTHHHHHHHHHHTSCC
T ss_pred HHHHHHHcC--CeEEEEeCCCCCCHHHHHHHHHHHHhh
Confidence 111111111 111467999999999999999887753
No 73
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=99.54 E-value=1.8e-14 Score=123.65 Aligned_cols=145 Identities=16% Similarity=0.057 Sum_probs=92.9
Q ss_pred CCcEEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCCcCC
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~~~ 134 (359)
..++|+++|.+|||||||+|+|++..... ...+..+.+.....+.+.+. ..++.+|||||....
T Consensus 11 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~---------------~~~~~i~Dt~G~~~~ 74 (181)
T 2efe_B 11 INAKLVLLGDVGAGKSSLVLRFVKDQFVE-FQESTIGAAFFSQTLAVNDA---------------TVKFEIWDTAGQERY 74 (181)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHHHCCCTT-TSCCCSCCSEEEEEEEETTE---------------EEEEEEEECCCSGGG
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCC-cCCCCceeEEEEEEEEECCE---------------EEEEEEEeCCCChhh
Confidence 34799999999999999999999654432 22233332333334444321 246999999997543
Q ss_pred CCcCcchhhhHhhHHHhcccceEEeecCC--------------------CccEEEeCCcccCCcchHHHHhhhhhccHHH
Q 018241 135 ASQGEGLGNKFLSHIREVDSILQVVRCFE--------------------DNDIVHVNGKVDPKSDVDVINLELVFSDLDQ 194 (359)
Q Consensus 135 ~~~~~~~~~~~l~~i~~aD~il~Vvd~~~--------------------~~~v~~v~nk~d~~~~~~~i~~el~~~d~~~ 194 (359)
.. .....++.+|++++|+|+++ +.+++.+.||+|...+..... +.
T Consensus 75 ~~-------~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~--------~~ 139 (181)
T 2efe_B 75 HS-------LAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDLLDARKVTA--------ED 139 (181)
T ss_dssp GG-------GTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCH--------HH
T ss_pred hh-------hhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccccCCH--------HH
Confidence 22 34556788999999999876 234788999999754321111 11
Q ss_pred HHHHHHHHhhhccccccchhhHHHHHHHHHHHHHHhcC
Q 018241 195 IEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMD 232 (359)
Q Consensus 195 l~~~~~~~~~~~~~~~~Sa~~~~~~~~ll~~i~~~L~~ 232 (359)
+........ .....+||+.+.++.++++.+.+.+..
T Consensus 140 ~~~~~~~~~--~~~~~~Sa~~g~gi~~l~~~l~~~~~~ 175 (181)
T 2efe_B 140 AQTYAQENG--LFFMETSAKTATNVKEIFYEIARRLPR 175 (181)
T ss_dssp HHHHHHHTT--CEEEECCSSSCTTHHHHHHHHHHTCC-
T ss_pred HHHHHHHcC--CEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 111111111 112567999999999999999888753
No 74
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.54 E-value=1.5e-14 Score=128.08 Aligned_cols=144 Identities=15% Similarity=0.096 Sum_probs=93.9
Q ss_pred CCcEEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCCcCC
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~~~ 134 (359)
..++|+++|.+|||||||+|+|+++. ......|..+.+.....+.+++. ..++.+|||||....
T Consensus 25 ~~~ki~lvG~~~vGKSsLi~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~---------------~~~l~l~Dt~G~~~~ 88 (201)
T 2ew1_A 25 FLFKIVLIGNAGVGKTCLVRRFTQGL-FPPGQGATIGVDFMIKTVEINGE---------------KVKLQIWDTAGQERF 88 (201)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSS-CCTTCCCCCSEEEEEEEEEETTE---------------EEEEEEEEECCSGGG
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCC-CCCCCCCccceeEEEEEEEECCE---------------EEEEEEEECCCcHHH
Confidence 34799999999999999999999544 33334444444444445555431 246999999997432
Q ss_pred CCcCcchhhhHhhHHHhcccceEEeecCC--------------------CccEEEeCCcccCCcchHHHHhhhhhccHHH
Q 018241 135 ASQGEGLGNKFLSHIREVDSILQVVRCFE--------------------DNDIVHVNGKVDPKSDVDVINLELVFSDLDQ 194 (359)
Q Consensus 135 ~~~~~~~~~~~l~~i~~aD~il~Vvd~~~--------------------~~~v~~v~nk~d~~~~~~~i~~el~~~d~~~ 194 (359)
.......++.+|++++|+|+++ ..+++.+.||+|...+...... .
T Consensus 89 -------~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~~~--------~ 153 (201)
T 2ew1_A 89 -------RSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERREVSQQ--------R 153 (201)
T ss_dssp -------HHHHGGGSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCSSCHH--------H
T ss_pred -------HHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHH--------H
Confidence 2244566789999999999875 2357889999997533211111 1
Q ss_pred HHHHHHHHhhhccccccchhhHHHHHHHHHHHHHHhc
Q 018241 195 IEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALM 231 (359)
Q Consensus 195 l~~~~~~~~~~~~~~~~Sa~~~~~~~~ll~~i~~~L~ 231 (359)
.+...... . .....+||+.+.++.++++.+.+.+.
T Consensus 154 ~~~~~~~~-~-~~~~~~Sa~~g~gv~~l~~~l~~~i~ 188 (201)
T 2ew1_A 154 AEEFSEAQ-D-MYYLETSAKESDNVEKLFLDLACRLI 188 (201)
T ss_dssp HHHHHHHH-T-CCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHc-C-CEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 11111111 1 11146899999999999988877764
No 75
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=99.54 E-value=3.2e-14 Score=124.22 Aligned_cols=148 Identities=18% Similarity=0.095 Sum_probs=95.0
Q ss_pred CCcEEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCCcCC
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~~~ 134 (359)
..++|+++|.+|||||||+|+|+++.. ...+..|+.......+.+.+. ...+.+|||||....
T Consensus 22 ~~~ki~~vG~~~~GKSsl~~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~---------------~~~~~i~Dt~G~~~~ 84 (194)
T 3reg_A 22 KALKIVVVGDGAVGKTCLLLAFSKGEI--PTAYVPTVFENFSHVMKYKNE---------------EFILHLWDTAGQEEY 84 (194)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCC--CSSCCCCSEEEEEEEEEETTE---------------EEEEEEEEECCSGGG
T ss_pred eeeEEEEECcCCCCHHHHHHHHhcCCC--CCccCCeeeeeeEEEEEECCE---------------EEEEEEEECCCcHHH
Confidence 348999999999999999999996553 223333443333333333321 245799999997544
Q ss_pred CCcCcchhhhHhhHHHhcccceEEeecCC--------------------CccEEEeCCcccCCcchHHHHhhhhhccHHH
Q 018241 135 ASQGEGLGNKFLSHIREVDSILQVVRCFE--------------------DNDIVHVNGKVDPKSDVDVINLELVFSDLDQ 194 (359)
Q Consensus 135 ~~~~~~~~~~~l~~i~~aD~il~Vvd~~~--------------------~~~v~~v~nk~d~~~~~~~i~~el~~~d~~~ 194 (359)
.. .....++++|++++|+|+++ +.+++.+.||+|...+... ....+.
T Consensus 85 ~~-------~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~------~~~~~~ 151 (194)
T 3reg_A 85 DR-------LRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTVLVGLKVDLRKDGSD------DVTKQE 151 (194)
T ss_dssp TT-------TGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTSEEEEEEECGGGCCTTTT------CCCHHH
T ss_pred HH-------HhHhhccCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccCCCC------cccHHH
Confidence 32 33455678999999999876 2468899999997643110 001111
Q ss_pred HHHHHHHHhhhccccccchhhHHHHHHHHHHHHHHhcCC
Q 018241 195 IEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMDG 233 (359)
Q Consensus 195 l~~~~~~~~~~~~~~~~Sa~~~~~~~~ll~~i~~~L~~~ 233 (359)
........... ....+||+++.++.++++.+.+.+...
T Consensus 152 ~~~~~~~~~~~-~~~~~Sa~~~~gi~~l~~~l~~~i~~~ 189 (194)
T 3reg_A 152 GDDLCQKLGCV-AYIEASSVAKIGLNEVFEKSVDCIFSN 189 (194)
T ss_dssp HHHHHHHHTCS-CEEECBTTTTBSHHHHHHHHHHHHHCS
T ss_pred HHHHHHhcCCC-EEEEeecCCCCCHHHHHHHHHHHHHhc
Confidence 22212221111 024689999999999999998887544
No 76
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=99.54 E-value=2.5e-14 Score=125.58 Aligned_cols=143 Identities=16% Similarity=0.145 Sum_probs=96.5
Q ss_pred CCcEEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCCcCC
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~~~ 134 (359)
..++|+++|.+|||||||+|+|++... ...+++++.+.....+.+++. ...+.||||||....
T Consensus 13 ~~~ki~v~G~~~~GKSsli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~---------------~~~~~l~Dt~G~~~~ 75 (206)
T 2bov_A 13 ALHKVIMVGSGGVGKSALTLQFMYDEF--VEDYEPTKADSYRKKVVLDGE---------------EVQIDILDTAGQEDY 75 (206)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCC--CTTCCTTCCEEEEEEEEETTE---------------EEEEEEEECCCTTCC
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCCC--CCCCCCccceEEEEEEEECCE---------------EEEEEEEcCCChhhh
Confidence 348999999999999999999996553 345555665555455554431 246899999997543
Q ss_pred CCcCcchhhhHhhHHHhcccceEEeecCC---------------------CccEEEeCCcccCCcchHHHHhhhhhccHH
Q 018241 135 ASQGEGLGNKFLSHIREVDSILQVVRCFE---------------------DNDIVHVNGKVDPKSDVDVINLELVFSDLD 193 (359)
Q Consensus 135 ~~~~~~~~~~~l~~i~~aD~il~Vvd~~~---------------------~~~v~~v~nk~d~~~~~~~i~~el~~~d~~ 193 (359)
.. .....++.+|++++|+|+++ +.+++.+.||+|...+... ..+
T Consensus 76 ~~-------~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~--------~~~ 140 (206)
T 2bov_A 76 AA-------IRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQV--------SVE 140 (206)
T ss_dssp HH-------HHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTCGGGCCS--------CHH
T ss_pred HH-------HHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccCccccccc--------cHH
Confidence 32 34556788999999999876 3468899999997643211 111
Q ss_pred HHHHHHHHHhhhccccccchhhHHHHHHHHHHHHHHhc
Q 018241 194 QIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALM 231 (359)
Q Consensus 194 ~l~~~~~~~~~~~~~~~~Sa~~~~~~~~ll~~i~~~L~ 231 (359)
.+........ .....+||+.+.++.++++.+.+.+.
T Consensus 141 ~~~~~~~~~~--~~~~~~Sa~~g~gi~~l~~~l~~~i~ 176 (206)
T 2bov_A 141 EAKNRAEQWN--VNYVETSAKTRANVDKVFFDLMREIR 176 (206)
T ss_dssp HHHHHHHHHT--CEEEEECTTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHhC--CeEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 1122111111 11256899999999999998887774
No 77
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.54 E-value=2e-14 Score=121.45 Aligned_cols=137 Identities=20% Similarity=0.200 Sum_probs=90.3
Q ss_pred cEEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCCcCCCC
Q 018241 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGAS 136 (359)
Q Consensus 57 ~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~~~~~ 136 (359)
++|+++|.+|||||||+|+|+++.... ..| |.......+... ...+.+|||||.....
T Consensus 1 ~ki~~~G~~~~GKssl~~~l~~~~~~~--~~~--t~~~~~~~~~~~-----------------~~~~~i~Dt~G~~~~~- 58 (164)
T 1r8s_A 1 MRILMVGLDAAGKTTILYKLKLGEIVT--TIP--TIGFNVETVEYK-----------------NISFTVWDVGGQDKIR- 58 (164)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHCSSC--CCC--CSSCCEEEEECS-----------------SCEEEEEECCCCGGGH-
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCcCc--ccC--cCceeEEEEEEC-----------------CEEEEEEEcCCChhhH-
Confidence 489999999999999999999665432 223 433444444433 3579999999985322
Q ss_pred cCcchhhhHhhHHHhcccceEEeecCCC---------------------ccEEEeCCcccCCcch--HHHHhhhhhccHH
Q 018241 137 QGEGLGNKFLSHIREVDSILQVVRCFED---------------------NDIVHVNGKVDPKSDV--DVINLELVFSDLD 193 (359)
Q Consensus 137 ~~~~~~~~~l~~i~~aD~il~Vvd~~~~---------------------~~v~~v~nk~d~~~~~--~~i~~el~~~d~~ 193 (359)
......++++|++++|+|+++. .+++.+.||+|...+. ..+..++....
T Consensus 59 ------~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~-- 130 (164)
T 1r8s_A 59 ------PLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHS-- 130 (164)
T ss_dssp ------HHHHHHTTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGG--
T ss_pred ------HHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCeEEEEEECcCCcCCCCHHHHHHHhCccc--
Confidence 2344567899999999998762 3578899999976432 11111110000
Q ss_pred HHHHHHHHHhh-hccccccchhhHHHHHHHHHHHHHHhc
Q 018241 194 QIEKRMEKLKK-GKAKDSQSKLKEDAEKAALEKIQQALM 231 (359)
Q Consensus 194 ~l~~~~~~~~~-~~~~~~~Sa~~~~~~~~ll~~i~~~L~ 231 (359)
... ......+||+.+.++.++++.+.+.+.
T Consensus 131 --------~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~ 161 (164)
T 1r8s_A 131 --------LRHRNWYIQATCATSGDGLYEGLDWLSNQLR 161 (164)
T ss_dssp --------CSSCCEEEEECBTTTTBTHHHHHHHHHHHC-
T ss_pred --------ccCccEEEEEcccCCCcCHHHHHHHHHHHHh
Confidence 000 001146799999999999999988774
No 78
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=99.54 E-value=3.8e-14 Score=122.10 Aligned_cols=153 Identities=18% Similarity=0.151 Sum_probs=95.4
Q ss_pred CcEEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCCcCCC
Q 018241 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA 135 (359)
Q Consensus 56 ~~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~~~~ 135 (359)
.++|+++|.+|||||||+|+|+++... ..+..++.+.....+.+.+. ...+.+|||||.....
T Consensus 5 ~~~i~~~G~~~~GKssl~~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~---------------~~~~~i~Dt~G~~~~~ 67 (186)
T 1mh1_A 5 AIKCVVVGDGAVGKTCLLISYTTNAFP--GEYIPTVFDNYSANVMVDGK---------------PVNLGLWDTAGQEDYD 67 (186)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSSCC--SSCCCCSCCEEEEEEEETTE---------------EEEEEEECCCCSGGGT
T ss_pred EEEEEEECCCCCCHHHHHHHHHcCCCC--CCcCCcccceeEEEEEECCE---------------EEEEEEEECCCCHhHH
Confidence 479999999999999999999955432 23344443333333333321 2468899999996543
Q ss_pred CcCcchhhhHhhHHHhcccceEEeecCC--------------------CccEEEeCCcccCCcchHHHHh--hh--hhcc
Q 018241 136 SQGEGLGNKFLSHIREVDSILQVVRCFE--------------------DNDIVHVNGKVDPKSDVDVINL--EL--VFSD 191 (359)
Q Consensus 136 ~~~~~~~~~~l~~i~~aD~il~Vvd~~~--------------------~~~v~~v~nk~d~~~~~~~i~~--el--~~~d 191 (359)
. .....++.+|++++|+|+++ +.+++.+.||+|...+...... +. ....
T Consensus 68 ~-------~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~ 140 (186)
T 1mh1_A 68 R-------LRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPIT 140 (186)
T ss_dssp T-------TGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCC
T ss_pred H-------HHHHhccCCcEEEEEEECCChhhHHHHHHHHHHHHHHhCCCCCEEEEeEcccccccchhhhhhcccccccCC
Confidence 3 22345678999999999876 2357889999997654322111 00 0111
Q ss_pred HHHHHHHHHHHhhhccccccchhhHHHHHHHHHHHHHHhcCC
Q 018241 192 LDQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMDG 233 (359)
Q Consensus 192 ~~~l~~~~~~~~~~~~~~~~Sa~~~~~~~~ll~~i~~~L~~~ 233 (359)
.+......... .......+||+++.++.++++.+.+.+.+.
T Consensus 141 ~~~~~~~~~~~-~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~ 181 (186)
T 1mh1_A 141 YPQGLAMAKEI-GAVKYLECSALTQRGLKTVFDEAIRAVLCP 181 (186)
T ss_dssp HHHHHHHHHHT-TCSEEEECCTTTCTTHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHhc-CCcEEEEecCCCccCHHHHHHHHHHHHhcc
Confidence 11111111111 111125689999999999999999888654
No 79
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=99.54 E-value=1.5e-14 Score=126.22 Aligned_cols=143 Identities=18% Similarity=0.082 Sum_probs=91.3
Q ss_pred CCcEEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCCcCC
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~~~ 134 (359)
..++|+++|.+|||||||+|+|++..... ...+..+.+.....+.+++. ...+.+|||||....
T Consensus 20 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~---------------~~~~~i~Dt~G~~~~ 83 (191)
T 2a5j_A 20 YLFKYIIIGDTGVGKSCLLLQFTDKRFQP-VHDLTIGVEFGARMVNIDGK---------------QIKLQIWDTAGQESF 83 (191)
T ss_dssp EEEEEEEESSTTSSHHHHHHHHHHSCCCC------CCSSEEEEEEEETTE---------------EEEEEEECCTTGGGT
T ss_pred cceEEEEECcCCCCHHHHHHHHhcCCCCC-CCCCcccceeEEEEEEECCE---------------EEEEEEEECCCchhh
Confidence 34799999999999999999999654432 23343444444445555431 246899999997654
Q ss_pred CCcCcchhhhHhhHHHhcccceEEeecCC--------------------CccEEEeCCcccCCcchHHHHhhhhhccHHH
Q 018241 135 ASQGEGLGNKFLSHIREVDSILQVVRCFE--------------------DNDIVHVNGKVDPKSDVDVINLELVFSDLDQ 194 (359)
Q Consensus 135 ~~~~~~~~~~~l~~i~~aD~il~Vvd~~~--------------------~~~v~~v~nk~d~~~~~~~i~~el~~~d~~~ 194 (359)
.. .....++++|++++|+|+++ +.+++.+.||+|...+..... +.
T Consensus 84 ~~-------~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~--------~~ 148 (191)
T 2a5j_A 84 RS-------ITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRRDVKR--------EE 148 (191)
T ss_dssp SC-------CCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCH--------HH
T ss_pred hh-------hHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCCccccCH--------HH
Confidence 33 23456688999999999876 235788999999754221111 11
Q ss_pred HHHHHHHHhhhccccccchhhHHHHHHHHHHHHHHh
Q 018241 195 IEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQAL 230 (359)
Q Consensus 195 l~~~~~~~~~~~~~~~~Sa~~~~~~~~ll~~i~~~L 230 (359)
.+....... .....+||+.+.++.++++.+.+.+
T Consensus 149 ~~~~~~~~~--~~~~~~Sa~~~~gi~~l~~~l~~~i 182 (191)
T 2a5j_A 149 GEAFAREHG--LIFMETSAKTACNVEEAFINTAKEI 182 (191)
T ss_dssp HHHHHHHHT--CEEEEECTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHcC--CEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 111111111 1114679999999999988877666
No 80
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=99.54 E-value=2.7e-14 Score=124.22 Aligned_cols=143 Identities=15% Similarity=0.135 Sum_probs=91.5
Q ss_pred CcEEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCCcCCC
Q 018241 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA 135 (359)
Q Consensus 56 ~~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~~~~ 135 (359)
.++|+++|.+|||||||+|+|++..... ...+..+.+.....+...+. ...+.+|||||.....
T Consensus 22 ~~ki~vvG~~~~GKSsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~---------------~~~~~l~Dt~G~~~~~ 85 (189)
T 2gf9_A 22 MFKLLLIGNSSVGKTSFLFRYADDSFTP-AFVSTVGIDFKVKTVYRHDK---------------RIKLQIWDTAGQERYR 85 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCC-SCCCCCCCEEEEEEEEETTE---------------EEEEEEEECCSCCSSC
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCCCCC-CcCCceeEEEEEEEEEECCe---------------EEEEEEEeCCCcHHHh
Confidence 4799999999999999999999655432 22222222222333333321 2469999999976543
Q ss_pred CcCcchhhhHhhHHHhcccceEEeecCC--------------------CccEEEeCCcccCCcchHHHHhhhhhccHHHH
Q 018241 136 SQGEGLGNKFLSHIREVDSILQVVRCFE--------------------DNDIVHVNGKVDPKSDVDVINLELVFSDLDQI 195 (359)
Q Consensus 136 ~~~~~~~~~~l~~i~~aD~il~Vvd~~~--------------------~~~v~~v~nk~d~~~~~~~i~~el~~~d~~~l 195 (359)
. .....++.+|++++|+|+++ +.+++.+.||+|...+.... .+..
T Consensus 86 ~-------~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~--------~~~~ 150 (189)
T 2gf9_A 86 T-------ITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDLEDERVVP--------AEDG 150 (189)
T ss_dssp C-------SGGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSC--------HHHH
T ss_pred h-------hHHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccCCC--------HHHH
Confidence 3 34456688999999999866 23578999999975432110 1111
Q ss_pred HHHHHHHhhhccccccchhhHHHHHHHHHHHHHHhc
Q 018241 196 EKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALM 231 (359)
Q Consensus 196 ~~~~~~~~~~~~~~~~Sa~~~~~~~~ll~~i~~~L~ 231 (359)
+....... .....+||+.+.++.++++.+.+.+.
T Consensus 151 ~~~~~~~~--~~~~~~Sa~~g~gi~~l~~~l~~~i~ 184 (189)
T 2gf9_A 151 RRLADDLG--FEFFEASAKENINVKQVFERLVDVIC 184 (189)
T ss_dssp HHHHHHHT--CEEEECBTTTTBSHHHHHHHHHHHHH
T ss_pred HHHHHHcC--CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 11111111 11256899999999999988887764
No 81
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=99.54 E-value=1.9e-14 Score=125.71 Aligned_cols=145 Identities=14% Similarity=0.050 Sum_probs=93.9
Q ss_pred CCcEEEEEecCCCChhHHHHHHHhcccc-ccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCCcC
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVVENGKA-QAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVK 133 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~~~~~~-~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~~ 133 (359)
..++|+++|.+|||||||+|+|++.... ...+.+++|.. ...+.+.+. ...+.+|||||..+
T Consensus 22 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~---------------~~~~~i~Dt~G~~~ 84 (192)
T 2fg5_A 22 RELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFM--TKTVPCGNE---------------LHKFLIWDTAGQER 84 (192)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEE--EEEEECSSS---------------EEEEEEEEECCSGG
T ss_pred CceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEE--EEEEEeCCE---------------EEEEEEEcCCCchh
Confidence 3479999999999999999999966532 34444554422 222333321 35799999999754
Q ss_pred CCCcCcchhhhHhhHHHhcccceEEeecCCC--------------------ccEEEeCCcccCCcchHHHHhhhhhccHH
Q 018241 134 GASQGEGLGNKFLSHIREVDSILQVVRCFED--------------------NDIVHVNGKVDPKSDVDVINLELVFSDLD 193 (359)
Q Consensus 134 ~~~~~~~~~~~~l~~i~~aD~il~Vvd~~~~--------------------~~v~~v~nk~d~~~~~~~i~~el~~~d~~ 193 (359)
... .....++.+|++++|+|+++. .+++.+.||+|...+... ..+
T Consensus 85 ~~~-------~~~~~~~~~d~iilV~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~v--------~~~ 149 (192)
T 2fg5_A 85 FHS-------LAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKCDLSDIREV--------PLK 149 (192)
T ss_dssp GGG-------GTHHHHTTCSEEEEEEETTCTHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCS--------CHH
T ss_pred hHh-------hhHHhhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECccccccccc--------CHH
Confidence 332 345567889999999998763 357889999997532111 011
Q ss_pred HHHHHHHHHhhhccccccchhhHHHHHHHHHHHHHHhcCC
Q 018241 194 QIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMDG 233 (359)
Q Consensus 194 ~l~~~~~~~~~~~~~~~~Sa~~~~~~~~ll~~i~~~L~~~ 233 (359)
.+........ .....+||+.+.++.++++.+.+.+.+.
T Consensus 150 ~~~~~~~~~~--~~~~~~Sa~~~~gi~~l~~~l~~~i~~~ 187 (192)
T 2fg5_A 150 DAKEYAESIG--AIVVETSAKNAINIEELFQGISRQIPPL 187 (192)
T ss_dssp HHHHHHHTTT--CEEEECBTTTTBSHHHHHHHHHHTCC--
T ss_pred HHHHHHHHcC--CEEEEEeCCCCcCHHHHHHHHHHHHHhh
Confidence 1122111111 1115689999999999999999888654
No 82
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.54 E-value=1.2e-14 Score=128.04 Aligned_cols=138 Identities=16% Similarity=0.257 Sum_probs=87.5
Q ss_pred CCcEEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCCcCC
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~~~ 134 (359)
...+|+++|.+|||||||+|+|+++...... .|..+..+.+.++ +.++.+|||||....
T Consensus 24 ~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~----~t~~~~~~~~~~~-----------------~~~l~i~Dt~G~~~~ 82 (198)
T 1f6b_A 24 KTGKLVFLGLDNAGKTTLLHMLKDDRLGQHV----PTLHPTSEELTIA-----------------GMTFTTFDLGGHIQA 82 (198)
T ss_dssp CCEEEEEEEETTSSHHHHHHHHSCC----------CCCCCSCEEEEET-----------------TEEEEEEEECC----
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCCCCccC----CCCCceeEEEEEC-----------------CEEEEEEECCCcHhh
Confidence 4579999999999999999999965543222 2444455566555 357999999998654
Q ss_pred CCcCcchhhhHhhHHHhcccceEEeecCCC---------------------ccEEEeCCcccCCcchHHHHhhhhhccHH
Q 018241 135 ASQGEGLGNKFLSHIREVDSILQVVRCFED---------------------NDIVHVNGKVDPKSDVDVINLELVFSDLD 193 (359)
Q Consensus 135 ~~~~~~~~~~~l~~i~~aD~il~Vvd~~~~---------------------~~v~~v~nk~d~~~~~~~i~~el~~~d~~ 193 (359)
.. .+...++++|++++|+|+++. .+++.+.||+|...... .+
T Consensus 83 ~~-------~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~----------~~ 145 (198)
T 1f6b_A 83 RR-------VWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAIS----------EE 145 (198)
T ss_dssp CC-------GGGGGGGGCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTTCCC----------HH
T ss_pred HH-------HHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEEECCCccccCC----------HH
Confidence 43 334556789999999998762 35789999999764210 11
Q ss_pred HHHHHHHHHh---------------hhccccccchhhHHHHHHHHHHHHHHh
Q 018241 194 QIEKRMEKLK---------------KGKAKDSQSKLKEDAEKAALEKIQQAL 230 (359)
Q Consensus 194 ~l~~~~~~~~---------------~~~~~~~~Sa~~~~~~~~ll~~i~~~L 230 (359)
.+........ .......+||+++.++.++++.+.+.+
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~l 197 (198)
T 1f6b_A 146 RLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFRWMAQYI 197 (198)
T ss_dssp HHHHHHTCTTTCCCSSCCCTTTCCSCCEEEEECBTTTTBSHHHHHHHHHTTC
T ss_pred HHHHHhCcccccccccccccccccCceEEEEEEECCCCCCHHHHHHHHHHhc
Confidence 1112111100 001114679999999999998887654
No 83
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=99.54 E-value=1.6e-14 Score=124.80 Aligned_cols=143 Identities=17% Similarity=0.130 Sum_probs=93.6
Q ss_pred CcEEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCCcCCC
Q 018241 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA 135 (359)
Q Consensus 56 ~~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~~~~ 135 (359)
.++|+++|.+|||||||+|+|++.... ....|.++.+.....+.+++. ...+.+|||||.....
T Consensus 10 ~~ki~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~---------------~~~~~l~Dt~G~~~~~ 73 (186)
T 2bme_A 10 LFKFLVIGNAGTGKSCLLHQFIEKKFK-DDSNHTIGVEFGSKIINVGGK---------------YVKLQIWDTAGQERFR 73 (186)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSCC-TTCCCCSEEEEEEEEEEETTE---------------EEEEEEEEECCSGGGH
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCC-CCCCCccceEEEEEEEEECCE---------------EEEEEEEeCCCcHHHH
Confidence 489999999999999999999955433 334454554454555555431 2468999999975322
Q ss_pred CcCcchhhhHhhHHHhcccceEEeecCC--------------------CccEEEeCCcccCCcchHHHHhhhhhccHHHH
Q 018241 136 SQGEGLGNKFLSHIREVDSILQVVRCFE--------------------DNDIVHVNGKVDPKSDVDVINLELVFSDLDQI 195 (359)
Q Consensus 136 ~~~~~~~~~~l~~i~~aD~il~Vvd~~~--------------------~~~v~~v~nk~d~~~~~~~i~~el~~~d~~~l 195 (359)
..+...++.+|++++|+|+++ +.+++.+.||+|...+... .....
T Consensus 74 -------~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~--------~~~~~ 138 (186)
T 2bme_A 74 -------SVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADREV--------TFLEA 138 (186)
T ss_dssp -------HHHHTTSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCS--------CHHHH
T ss_pred -------HHHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccccccccc--------CHHHH
Confidence 245566789999999999876 2357889999997532111 00111
Q ss_pred HHHHHHHhhhccccccchhhHHHHHHHHHHHHHHhc
Q 018241 196 EKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALM 231 (359)
Q Consensus 196 ~~~~~~~~~~~~~~~~Sa~~~~~~~~ll~~i~~~L~ 231 (359)
........ .....+||+.+.++.++++.+.+.+.
T Consensus 139 ~~~~~~~~--~~~~~~Sa~~~~gi~~l~~~l~~~~~ 172 (186)
T 2bme_A 139 SRFAQENE--LMFLETSALTGENVEEAFVQCARKIL 172 (186)
T ss_dssp HHHHHHTT--CEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHHcC--CEEEEecCCCCCCHHHHHHHHHHHHH
Confidence 11111111 11146799999999998888877664
No 84
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=99.54 E-value=2.7e-14 Score=124.51 Aligned_cols=143 Identities=17% Similarity=0.139 Sum_probs=90.6
Q ss_pred CCcEEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCCcCC
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~~~ 134 (359)
..++|+|+|.+|||||||+|+|++....... .+..+.+.....+.+.+. ..++.+|||||....
T Consensus 24 ~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~-~~t~~~~~~~~~~~~~~~---------------~~~~~i~Dt~G~~~~ 87 (193)
T 2oil_A 24 FVFKVVLIGESGVGKTNLLSRFTRNEFSHDS-RTTIGVEFSTRTVMLGTA---------------AVKAQIWDTAGLERY 87 (193)
T ss_dssp EEEEEEEESSTTSSHHHHHHHHHHSCCCSSC-CCCSSEEEEEEEEEETTE---------------EEEEEEEEESCCCTT
T ss_pred cceEEEEECcCCCCHHHHHHHHhcCCCCCCC-CCccceeEEEEEEEECCE---------------EEEEEEEeCCCchhh
Confidence 4489999999999999999999965544322 121111122223333221 356899999998654
Q ss_pred CCcCcchhhhHhhHHHhcccceEEeecCC--------------------CccEEEeCCcccCCcchHHHHhhhhhccHHH
Q 018241 135 ASQGEGLGNKFLSHIREVDSILQVVRCFE--------------------DNDIVHVNGKVDPKSDVDVINLELVFSDLDQ 194 (359)
Q Consensus 135 ~~~~~~~~~~~l~~i~~aD~il~Vvd~~~--------------------~~~v~~v~nk~d~~~~~~~i~~el~~~d~~~ 194 (359)
.. .....++.+|++++|+|+++ +.+++.+.||+|...+.... .+.
T Consensus 88 ~~-------~~~~~~~~~d~vi~v~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~~~--------~~~ 152 (193)
T 2oil_A 88 RA-------ITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQAREVP--------TEE 152 (193)
T ss_dssp CT-------THHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHTTSCTTCEEEEEEECGGGGGGCCSC--------HHH
T ss_pred hh-------hhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECCCcccccccC--------HHH
Confidence 33 34556789999999999876 23578899999975432110 111
Q ss_pred HHHHHHHHhhhccccccchhhHHHHHHHHHHHHHHh
Q 018241 195 IEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQAL 230 (359)
Q Consensus 195 l~~~~~~~~~~~~~~~~Sa~~~~~~~~ll~~i~~~L 230 (359)
........ . .....+||+.+.++.++++.+.+.+
T Consensus 153 ~~~~~~~~-~-~~~~~~Sa~~~~gi~~l~~~l~~~i 186 (193)
T 2oil_A 153 ARMFAENN-G-LLFLETSALDSTNVELAFETVLKEI 186 (193)
T ss_dssp HHHHHHHT-T-CEEEEECTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHc-C-CEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 11111111 1 1114689999999999998887766
No 85
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=99.53 E-value=2e-14 Score=122.08 Aligned_cols=143 Identities=16% Similarity=0.074 Sum_probs=86.4
Q ss_pred cEEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCCcCCCC
Q 018241 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGAS 136 (359)
Q Consensus 57 ~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~~~~~ 136 (359)
++|+++|.+|||||||+|+|++..... ...+.+|.+.....+.+++. ..++.+|||||..+...
T Consensus 3 ~ki~ivG~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~---------------~~~~~i~D~~g~~~~~~ 66 (169)
T 3q85_A 3 FKVMLVGESGVGKSTLAGTFGGLQGDH-AHEMENSEDTYERRIMVDKE---------------EVTLIVYDIWEQGDAGG 66 (169)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC-------------CEEEEEEEETTE---------------EEEEEEECCCCC-----
T ss_pred EEEEEECCCCCCHHHHHHHHHhccCcc-cccCCCcCCeeeEEEEECCe---------------EEEEEEEECCCccccch
Confidence 689999999999999999999544333 23344455555555555432 25688999999965432
Q ss_pred cCcchhhhHhhHHHhcccceEEeecCC---------------------CccEEEeCCcccCCcchHHHHhhhhhccHHHH
Q 018241 137 QGEGLGNKFLSHIREVDSILQVVRCFE---------------------DNDIVHVNGKVDPKSDVDVINLELVFSDLDQI 195 (359)
Q Consensus 137 ~~~~~~~~~l~~i~~aD~il~Vvd~~~---------------------~~~v~~v~nk~d~~~~~~~i~~el~~~d~~~l 195 (359)
. .....++.+|++++|+|+++ +.+++.+.||+|...+..... +..
T Consensus 67 ~------~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~--------~~~ 132 (169)
T 3q85_A 67 W------LQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSL--------EEG 132 (169)
T ss_dssp ---------CHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCGGGCCSCH--------HHH
T ss_pred h------hhhhhhccCCEEEEEEECCChHHHHHHHHHHHHHHhcccCCCCCEEEEeeCcchhhcccCCH--------HHH
Confidence 1 11234577999999999876 246889999999753321111 111
Q ss_pred HHHHHHHhhhccccccchhhHHHHHHHHHHHHHHhc
Q 018241 196 EKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALM 231 (359)
Q Consensus 196 ~~~~~~~~~~~~~~~~Sa~~~~~~~~ll~~i~~~L~ 231 (359)
........ .....+||+.+.++.++++.+.+.+.
T Consensus 133 ~~~~~~~~--~~~~~~Sa~~~~~v~~l~~~l~~~i~ 166 (169)
T 3q85_A 133 RHLAGTLS--CKHIETSAALHHNTRELFEGAVRQIR 166 (169)
T ss_dssp HHHHHHTT--CEEEECBTTTTBSHHHHHHHHHHHHH
T ss_pred HHHHHHcC--CcEEEecCccCCCHHHHHHHHHHHHH
Confidence 11111111 11156899999999999998888764
No 86
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.53 E-value=1.2e-14 Score=125.57 Aligned_cols=137 Identities=20% Similarity=0.170 Sum_probs=88.8
Q ss_pred CCcEEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCCcCC
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~~~ 134 (359)
..++|+++|.+|||||||+|+|+++......+..+. ....+.+. +..+.+|||||..+.
T Consensus 20 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~t~~~----~~~~~~~~-----------------~~~~~i~Dt~G~~~~ 78 (181)
T 2h17_A 20 QEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGS----NVEEIVIN-----------------NTRFLMWDIGGQESL 78 (181)
T ss_dssp -CEEEEEEEETTSSHHHHHHHHHTTSCEEEECCSSS----SCEEEEET-----------------TEEEEEEEESSSGGG
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCCccCCcCce----eeEEEEEC-----------------CEEEEEEECCCCHhH
Confidence 458999999999999999999996654333332222 22334333 367999999998654
Q ss_pred CCcCcchhhhHhhHHHhcccceEEeecCCC---------------------ccEEEeCCcccCCcc--hHHHHhhhhhcc
Q 018241 135 ASQGEGLGNKFLSHIREVDSILQVVRCFED---------------------NDIVHVNGKVDPKSD--VDVINLELVFSD 191 (359)
Q Consensus 135 ~~~~~~~~~~~l~~i~~aD~il~Vvd~~~~---------------------~~v~~v~nk~d~~~~--~~~i~~el~~~d 191 (359)
.. .+...++++|++++|+|+++. .+++.+.||+|...+ .+.+.+.+.+..
T Consensus 79 ~~-------~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~ 151 (181)
T 2h17_A 79 RS-------SWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTS 151 (181)
T ss_dssp TC-------GGGGGGTTCCEEEEEEETTCTTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGG
T ss_pred HH-------HHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhCCCeEEEEEECCCcccCCCHHHHHHHhCccc
Confidence 33 345567899999999998762 247889999997643 122222111000
Q ss_pred HHHHHHHHHHHhh-hccccccchhhHHHHHHHHHHHHHH
Q 018241 192 LDQIEKRMEKLKK-GKAKDSQSKLKEDAEKAALEKIQQA 229 (359)
Q Consensus 192 ~~~l~~~~~~~~~-~~~~~~~Sa~~~~~~~~ll~~i~~~ 229 (359)
... ......+||+.+.++.++++.+.+.
T Consensus 152 ----------~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~ 180 (181)
T 2h17_A 152 ----------IKDHQWHIQACCALTGEGLCQGLEWMMSR 180 (181)
T ss_dssp ----------CCSSCEEEEECBTTTTBTHHHHHHHHHTC
T ss_pred ----------ccCCceEEEEccCCCCcCHHHHHHHHHhh
Confidence 000 0011467999999999988877643
No 87
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=99.53 E-value=3.1e-14 Score=122.58 Aligned_cols=142 Identities=16% Similarity=0.147 Sum_probs=94.7
Q ss_pred CcEEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCCcCCC
Q 018241 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA 135 (359)
Q Consensus 56 ~~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~~~~ 135 (359)
.++|+++|.+|||||||+|+|++... ...++.++.+.....+.+.+. ...+.+|||||..+..
T Consensus 18 ~~ki~v~G~~~~GKSsli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~---------------~~~~~l~Dt~G~~~~~ 80 (187)
T 2a9k_A 18 LHKVIMVGSGGVGKSALTLQFMYDEF--VEDYEPTKADSYRKKVVLDGE---------------EVQIDILDTAGQEDYA 80 (187)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCC--CCSCCTTCCEEEEEEEEETTE---------------EEEEEEEECCCTTCCH
T ss_pred ceEEEEECCCCCCHHHHHHHHhhCCC--CCcCCCccceEEEEEEEECCE---------------EEEEEEEECCCCcccH
Confidence 47999999999999999999996553 334555554444444444431 2468999999975432
Q ss_pred CcCcchhhhHhhHHHhcccceEEeecCC---------------------CccEEEeCCcccCCcchHHHHhhhhhccHHH
Q 018241 136 SQGEGLGNKFLSHIREVDSILQVVRCFE---------------------DNDIVHVNGKVDPKSDVDVINLELVFSDLDQ 194 (359)
Q Consensus 136 ~~~~~~~~~~l~~i~~aD~il~Vvd~~~---------------------~~~v~~v~nk~d~~~~~~~i~~el~~~d~~~ 194 (359)
. .....++.+|++++|+|+++ +.+++.+.||+|...+... ..+.
T Consensus 81 ~-------~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~--------~~~~ 145 (187)
T 2a9k_A 81 A-------IRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQV--------SVEE 145 (187)
T ss_dssp H-------HHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTCCEEEEEECGGGGGGCCS--------CHHH
T ss_pred H-------HHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCcc--------CHHH
Confidence 2 44556789999999999876 2467899999997532111 1111
Q ss_pred HHHHHHHHhhhccccccchhhHHHHHHHHHHHHHHhc
Q 018241 195 IEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALM 231 (359)
Q Consensus 195 l~~~~~~~~~~~~~~~~Sa~~~~~~~~ll~~i~~~L~ 231 (359)
+........ .....+||+++.++.++++.+.+.+.
T Consensus 146 ~~~~~~~~~--~~~~~~Sa~~~~gi~~l~~~l~~~i~ 180 (187)
T 2a9k_A 146 AKNRAEQWN--VNYVETSAKTRANVDKVFFDLMREIR 180 (187)
T ss_dssp HHHHHHHTT--CEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHcC--CeEEEeCCCCCCCHHHHHHHHHHHHH
Confidence 122111111 11146799999999999998887764
No 88
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=99.53 E-value=7.8e-15 Score=138.31 Aligned_cols=172 Identities=15% Similarity=0.126 Sum_probs=93.5
Q ss_pred CCcEEEEEecCCCChhHHHHHHHhccc-----cccCCCC---ceeccce---------eEEEE-eCCCccchh-------
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVVENGK-----AQAANFP---FCTIEPN---------VGIVA-VPDPRLHVL------- 109 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~~~~~-----~~~~~~p---~tT~~~~---------~g~~~-~~~~r~~~l------- 109 (359)
..++|+|+|.||||||||+|+|+|... ..++..| .+|+.+. .+.+. .++......
T Consensus 23 ~~~~I~vvG~~~~GKSTlln~l~g~~~lp~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 102 (315)
T 1jwy_B 23 DLPQIVVVGSQSSGKSSVLENIVGRDFLPRGSGIVTRRPLILQLTHLPIADDGSQTQEWGEFLHKPNDMFYDFSEIREEI 102 (315)
T ss_dssp CCCEEEEEECSSSSHHHHHHHHHTSCCCCC--------CEEEEEEECCCCTTSCCCCCEEEESSSTTCCBCCTHHHHHHH
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHCCCcCCCCCCceeeeeEEEEEEeCCCcccccchhhhhhhhcccccccCCHHHHHHHH
Confidence 457999999999999999999997765 3333444 2332211 00000 000000000
Q ss_pred -------c-------------cccccccccCceEEEEecCCCcCCCC------cCcchhhhHhhHHHhcccceEEeecCC
Q 018241 110 -------S-------------GLSKSQKAVPASVEFVDIAGLVKGAS------QGEGLGNKFLSHIREVDSILQVVRCFE 163 (359)
Q Consensus 110 -------~-------------~~~~~~~~~~~~i~lvDtpG~~~~~~------~~~~~~~~~l~~i~~aD~il~Vvd~~~ 163 (359)
. +++.+. ..++.||||||+.+... ..+.+...+..+++++|++++|+|+..
T Consensus 103 ~~~~~~~~g~~~~~~~~~~~~~i~~~~---~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~ 179 (315)
T 1jwy_B 103 IRDTDRMTGKNKGISAQPINLKIYSPH---VVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPAN 179 (315)
T ss_dssp HHHCC--------CCCCCEEEEEEETT---SCSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESS
T ss_pred HHHHHHhcCCCCCccCccEEEEEecCC---CCCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecC
Confidence 0 011111 35799999999975321 112344566788899999999999732
Q ss_pred -C-----------------ccEEEeCCcccCCcchHHHHhhhhhccHHHHHHHHHHH-hhhccccccchhh---HHHHHH
Q 018241 164 -D-----------------NDIVHVNGKVDPKSDVDVINLELVFSDLDQIEKRMEKL-KKGKAKDSQSKLK---EDAEKA 221 (359)
Q Consensus 164 -~-----------------~~v~~v~nk~d~~~~~~~i~~el~~~d~~~l~~~~~~~-~~~~~~~~~Sa~~---~~~~~~ 221 (359)
+ .+++.+.||+|.......+.. .++...... .........|+.. +.++.+
T Consensus 180 ~~~~~~~~~~i~~~~~~~~~~~i~v~NK~Dl~~~~~~~~~--------~~~~~~~~~~~~~~~v~~~sa~~~~~~~gv~~ 251 (315)
T 1jwy_B 180 TDLANSDALQLAKEVDPEGKRTIGVITKLDLMDKGTDAME--------VLTGRVIPLTLGFIGVINRSQEDIIAKKSIRE 251 (315)
T ss_dssp SCSTTCSHHHHHHHHCSSCSSEEEEEECTTSSCSSCCCHH--------HHTTSSSCCTTCEEECCCCCHHHHSSSCCHHH
T ss_pred cchhhhHHHHHHHHhCCCCCcEEEEEcCcccCCcchHHHH--------HHhCCCccCCCCeEEEecCChhhhccCCCHHH
Confidence 1 247889999997743221111 111000000 0000113445555 567889
Q ss_pred HHHHHHHHhcCCCCCC
Q 018241 222 ALEKIQQALMDGKPAR 237 (359)
Q Consensus 222 ll~~i~~~L~~~~~~~ 237 (359)
+++.+.++++.++++.
T Consensus 252 l~~~~~~~~~~~~~~~ 267 (315)
T 1jwy_B 252 SLKSEILYFKNHPIYK 267 (315)
T ss_dssp HHHHHHHHHHTCTTGG
T ss_pred HHHHHHHHHhCCCccc
Confidence 9999999999877644
No 89
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.53 E-value=2.3e-14 Score=124.00 Aligned_cols=141 Identities=15% Similarity=0.171 Sum_probs=93.3
Q ss_pred CCcEEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCCcCC
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~~~ 134 (359)
..++|+++|.+|||||||+|+|+++. ..... .|.......+.++ +..+.+|||||..+.
T Consensus 17 ~~~~i~v~G~~~~GKssl~~~l~~~~--~~~~~--~t~~~~~~~~~~~-----------------~~~~~~~Dt~G~~~~ 75 (186)
T 1ksh_A 17 RELRLLMLGLDNAGKTTILKKFNGED--VDTIS--PTLGFNIKTLEHR-----------------GFKLNIWDVGGQKSL 75 (186)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTTCC--CSSCC--CCSSEEEEEEEET-----------------TEEEEEEEECCSHHH
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcCC--CCccc--ccCccceEEEEEC-----------------CEEEEEEECCCCHhH
Confidence 56899999999999999999999655 22222 2333334444443 367999999998543
Q ss_pred CCcCcchhhhHhhHHHhcccceEEeecCCC---------------------ccEEEeCCcccCCcch--HHHHhhhhhcc
Q 018241 135 ASQGEGLGNKFLSHIREVDSILQVVRCFED---------------------NDIVHVNGKVDPKSDV--DVINLELVFSD 191 (359)
Q Consensus 135 ~~~~~~~~~~~l~~i~~aD~il~Vvd~~~~---------------------~~v~~v~nk~d~~~~~--~~i~~el~~~d 191 (359)
.. .....++++|++++|+|+++. .+++.+.||+|...+. +.+.+++.+.
T Consensus 76 ~~-------~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~- 147 (186)
T 1ksh_A 76 RS-------YWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSCNAIQEALELD- 147 (186)
T ss_dssp HT-------TGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGG-
T ss_pred HH-------HHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhcCCCcEEEEEeCccCCCCCCHHHHHHHhChh-
Confidence 22 334556889999999998762 3578899999976432 1111111100
Q ss_pred HHHHHHHHHHHhh-hccccccchhhHHHHHHHHHHHHHHhcCC
Q 018241 192 LDQIEKRMEKLKK-GKAKDSQSKLKEDAEKAALEKIQQALMDG 233 (359)
Q Consensus 192 ~~~l~~~~~~~~~-~~~~~~~Sa~~~~~~~~ll~~i~~~L~~~ 233 (359)
.... ......+||+.+.++.++++.+.+.+.+.
T Consensus 148 ---------~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~ 181 (186)
T 1ksh_A 148 ---------SIRSHHWRIQGCSAVTGEDLLPGIDWLLDDISSR 181 (186)
T ss_dssp ---------GCCSSCEEEEECCTTTCTTHHHHHHHHHHHHHTC
T ss_pred ---------hccCCceEEEEeeCCCCCCHHHHHHHHHHHHHhc
Confidence 0000 01114689999999999999999988654
No 90
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.53 E-value=4.3e-14 Score=123.02 Aligned_cols=141 Identities=16% Similarity=0.202 Sum_probs=93.3
Q ss_pred CCcEEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCCcCC
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~~~ 134 (359)
..++|+++|.+|||||||+|+|++....... + ..|.......+.++ +..+.+|||||....
T Consensus 20 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~-~-~~t~~~~~~~~~~~-----------------~~~~~l~Dt~G~~~~ 80 (190)
T 2h57_A 20 KEVHVLCLGLDNSGKTTIINKLKPSNAQSQN-I-LPTIGFSIEKFKSS-----------------SLSFTVFDMSGQGRY 80 (190)
T ss_dssp -CEEEEEEECTTSSHHHHHHHTSCGGGCCSS-C-CCCSSEEEEEEECS-----------------SCEEEEEEECCSTTT
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCCCC-c-CCccceeEEEEEEC-----------------CEEEEEEECCCCHHH
Confidence 4589999999999999999999965522222 2 24444555555544 357999999997654
Q ss_pred CCcCcchhhhHhhHHHhcccceEEeecCC-----------------------CccEEEeCCcccCCcchHHHHhhhhhcc
Q 018241 135 ASQGEGLGNKFLSHIREVDSILQVVRCFE-----------------------DNDIVHVNGKVDPKSDVDVINLELVFSD 191 (359)
Q Consensus 135 ~~~~~~~~~~~l~~i~~aD~il~Vvd~~~-----------------------~~~v~~v~nk~d~~~~~~~i~~el~~~d 191 (359)
.. .+...++++|++++|+|+++ +.+++.+.||+|...+...
T Consensus 81 ~~-------~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~--------- 144 (190)
T 2h57_A 81 RN-------LWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRDAVTS--------- 144 (190)
T ss_dssp GG-------GGGGGGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTTCCCH---------
T ss_pred HH-------HHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCcccCCCH---------
Confidence 33 34456789999999999865 2357889999997643211
Q ss_pred HHHHHHHHH--HHhh-hccccccchhhHHHHHHHHHHHHHHhc
Q 018241 192 LDQIEKRME--KLKK-GKAKDSQSKLKEDAEKAALEKIQQALM 231 (359)
Q Consensus 192 ~~~l~~~~~--~~~~-~~~~~~~Sa~~~~~~~~ll~~i~~~L~ 231 (359)
+.+..... .+.. ......+||+.+.++.++++.+.+.+.
T Consensus 145 -~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~ 186 (190)
T 2h57_A 145 -VKVSQLLCLENIKDKPWHICASDAIKGEGLQEGVDWLQDQIQ 186 (190)
T ss_dssp -HHHHHHHTGGGCCSSCEEEEECBTTTTBTHHHHHHHHHHHC-
T ss_pred -HHHHHHhChhhccCCceEEEEccCCCCcCHHHHHHHHHHHHH
Confidence 11111111 0000 011146899999999999999988774
No 91
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=99.53 E-value=3.4e-14 Score=121.57 Aligned_cols=144 Identities=18% Similarity=0.121 Sum_probs=91.7
Q ss_pred CcEEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCCcCCC
Q 018241 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA 135 (359)
Q Consensus 56 ~~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~~~~ 135 (359)
.++|+++|.+|||||||+|+|++... .....|..+.+.....+.+++. ...+.+|||||.....
T Consensus 7 ~~~i~v~G~~~~GKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~i~Dt~G~~~~~ 70 (177)
T 1wms_A 7 LFKVILLGDGGVGKSSLMNRYVTNKF-DTQLFHTIGVEFLNKDLEVDGH---------------FVTMQIWDTAGQERFR 70 (177)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCC-CC----CCSEEEEEEEEEETTE---------------EEEEEEEECCCCGGGH
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCCC-CCCCCCceeeeEEEEEEEECCE---------------EEEEEEEeCCCchhhh
Confidence 47999999999999999999995443 3333344443444444544431 2469999999974322
Q ss_pred CcCcchhhhHhhHHHhcccceEEeecCCC------------------------ccEEEeCCcccCCcchHHHHhhhhhcc
Q 018241 136 SQGEGLGNKFLSHIREVDSILQVVRCFED------------------------NDIVHVNGKVDPKSDVDVINLELVFSD 191 (359)
Q Consensus 136 ~~~~~~~~~~l~~i~~aD~il~Vvd~~~~------------------------~~v~~v~nk~d~~~~~~~i~~el~~~d 191 (359)
......++.+|++++|+|+.+. .+++.+.||+|.... .. .
T Consensus 71 -------~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~-~~--------~ 134 (177)
T 1wms_A 71 -------SLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISER-QV--------S 134 (177)
T ss_dssp -------HHHGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSSC-SS--------C
T ss_pred -------hhHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCccccc-cc--------C
Confidence 2345567889999999998762 267889999997521 11 1
Q ss_pred HHHHHHHHHHHhhhccccccchhhHHHHHHHHHHHHHHhcC
Q 018241 192 LDQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMD 232 (359)
Q Consensus 192 ~~~l~~~~~~~~~~~~~~~~Sa~~~~~~~~ll~~i~~~L~~ 232 (359)
.+.+....... .......+||+.+.++.++++.+.+.+.+
T Consensus 135 ~~~~~~~~~~~-~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~ 174 (177)
T 1wms_A 135 TEEAQAWCRDN-GDYPYFETSAKDATNVAAAFEEAVRRVLA 174 (177)
T ss_dssp HHHHHHHHHHT-TCCCEEECCTTTCTTHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhc-CCceEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence 11111111111 11112578999999999999998887743
No 92
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.53 E-value=8.1e-14 Score=134.32 Aligned_cols=148 Identities=26% Similarity=0.279 Sum_probs=102.2
Q ss_pred cCCcEEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCCcC
Q 018241 54 SMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVK 133 (359)
Q Consensus 54 ~~~~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~~ 133 (359)
...++|+++|.||||||||+|+|++.. ..++++|++|.+...+.+... +..+.+|||||+..
T Consensus 165 ~~~~~v~lvG~~gvGKSTLin~L~~~~-~~~~~~~~~t~~~~~~~~~~~-----------------~~~~~l~Dt~G~~~ 226 (357)
T 2e87_A 165 LEIPTVVIAGHPNVGKSTLLKALTTAK-PEIASYPFTTRGINVGQFEDG-----------------YFRYQIIDTPGLLD 226 (357)
T ss_dssp SSSCEEEEECSTTSSHHHHHHHHCSSC-CEEECCTTCSSCEEEEEEEET-----------------TEEEEEEECTTTSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC-CccCCCCCeeeceeEEEEEec-----------------CceEEEEeCCCccc
Confidence 356899999999999999999999554 667889999998888776654 35699999999975
Q ss_pred CCCcC-cchh-hhHhhHHHhcccceEEeecCC---------------------CccEEEeCCcccCCcchHHHHhhhhhc
Q 018241 134 GASQG-EGLG-NKFLSHIREVDSILQVVRCFE---------------------DNDIVHVNGKVDPKSDVDVINLELVFS 190 (359)
Q Consensus 134 ~~~~~-~~~~-~~~l~~i~~aD~il~Vvd~~~---------------------~~~v~~v~nk~d~~~~~~~i~~el~~~ 190 (359)
..... ..+. ..+......+|++++|+|+++ +.+++.+.||+|...... +..
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~~~piilV~NK~Dl~~~~~-~~~----- 300 (357)
T 2e87_A 227 RPISERNEIEKQAILALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFKDLPFLVVINKIDVADEEN-IKR----- 300 (357)
T ss_dssp SCSTTSCHHHHHHHHGGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTTTSCEEEEECCTTTCCHHH-HHH-----
T ss_pred cchhhhhHHHHHHHHHHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcCCCCEEEEEECcccCChHH-HHH-----
Confidence 43221 1111 222333356999999999764 235778999999764322 111
Q ss_pred cHHHHHHHHHHHhhhccccccchhhHHHHHHHHHHHHHHhc
Q 018241 191 DLDQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALM 231 (359)
Q Consensus 191 d~~~l~~~~~~~~~~~~~~~~Sa~~~~~~~~ll~~i~~~L~ 231 (359)
....... .......+||+.+.++.++++.+.+.+.
T Consensus 301 ----~~~~~~~--~~~~~~~iSA~~g~gi~~l~~~i~~~l~ 335 (357)
T 2e87_A 301 ----LEKFVKE--KGLNPIKISALKGTGIDLVKEEIIKTLR 335 (357)
T ss_dssp ----HHHHHHH--TTCCCEECBTTTTBTHHHHHHHHHHHHH
T ss_pred ----HHHHHHh--cCCCeEEEeCCCCcCHHHHHHHHHHHHH
Confidence 1111111 1111246899999999999999988884
No 93
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=99.52 E-value=2.4e-14 Score=125.92 Aligned_cols=147 Identities=17% Similarity=0.088 Sum_probs=97.4
Q ss_pred cCCcEEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCCcC
Q 018241 54 SMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVK 133 (359)
Q Consensus 54 ~~~~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~~ 133 (359)
...++|+++|.+|||||||+|+|++... .....|++|.+.....+.+.+. ..++.+|||||...
T Consensus 21 ~~~~ki~vvG~~~vGKSsLi~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~---------------~~~l~i~Dt~g~~~ 84 (195)
T 3cbq_A 21 DGIFKVMLVGESGVGKSTLAGTFGGLQG-DSAHEPENPEDTYERRIMVDKE---------------EVTLVVYDIWEQGD 84 (195)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHTCCEEC-CGGGTTTSCTTEEEEEEEETTE---------------EEEEEEECCCCCSG
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHhccC-CccCCCCcccceEEEEEEECCE---------------EEEEEEEecCCCcc
Confidence 3458999999999999999999984332 2345566776666666666532 24688999999853
Q ss_pred CCCcCcchhhhHhhHHHhcccceEEeecCC---------------------CccEEEeCCcccCCcchHHHHhhhhhccH
Q 018241 134 GASQGEGLGNKFLSHIREVDSILQVVRCFE---------------------DNDIVHVNGKVDPKSDVDVINLELVFSDL 192 (359)
Q Consensus 134 ~~~~~~~~~~~~l~~i~~aD~il~Vvd~~~---------------------~~~v~~v~nk~d~~~~~~~i~~el~~~d~ 192 (359)
... . .....++.+|++++|+|+++ +.+++.+.||+|...+.... .
T Consensus 85 ~~~---~---~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~--------~ 150 (195)
T 3cbq_A 85 AGG---W---LRDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVS--------L 150 (195)
T ss_dssp GGH---H---HHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCTTTCCSC--------H
T ss_pred chh---h---hHHHhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeechhccccCCcC--------H
Confidence 211 0 11234678999999999875 23578899999976432111 1
Q ss_pred HHHHHHHHHHhhhccccccchhhHHHHHHHHHHHHHHhcC
Q 018241 193 DQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMD 232 (359)
Q Consensus 193 ~~l~~~~~~~~~~~~~~~~Sa~~~~~~~~ll~~i~~~L~~ 232 (359)
+.......... .....+||+.+.++.++++.+.+.+..
T Consensus 151 ~~~~~~a~~~~--~~~~e~Sa~~~~~v~~lf~~l~~~i~~ 188 (195)
T 3cbq_A 151 EEGRHLAGTLS--CKHIETSAALHHNTRELFEGAVRQIRL 188 (195)
T ss_dssp HHHHHHHHHTT--CEEEEEBTTTTBSHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhC--CEEEEEcCCCCCCHHHHHHHHHHHHHH
Confidence 11111111111 112568999999999999999888854
No 94
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.52 E-value=1.7e-14 Score=126.09 Aligned_cols=143 Identities=17% Similarity=0.190 Sum_probs=90.6
Q ss_pred CCcEEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCCcCC
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~~~ 134 (359)
...+|+++|.+|||||||+|+++++...... .|..+..+.+.++ +..+.+|||||....
T Consensus 22 ~~~ki~~vG~~~vGKSsli~~l~~~~~~~~~----~t~~~~~~~~~~~-----------------~~~~~i~Dt~G~~~~ 80 (190)
T 1m2o_B 22 KHGKLLFLGLDNAGKTTLLHMLKNDRLATLQ----PTWHPTSEELAIG-----------------NIKFTTFDLGGHIQA 80 (190)
T ss_dssp --CEEEEEESTTSSHHHHHHHHHHSCCCCCC----CCCSCEEEEEEET-----------------TEEEEEEECCCSGGG
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCccc----cCCCCCeEEEEEC-----------------CEEEEEEECCCCHHH
Confidence 3479999999999999999999966544322 3545556666665 357999999998654
Q ss_pred CCcCcchhhhHhhHHHhcccceEEeecCCC---------------------ccEEEeCCcccCCcch--HHHHhhhhhcc
Q 018241 135 ASQGEGLGNKFLSHIREVDSILQVVRCFED---------------------NDIVHVNGKVDPKSDV--DVINLELVFSD 191 (359)
Q Consensus 135 ~~~~~~~~~~~l~~i~~aD~il~Vvd~~~~---------------------~~v~~v~nk~d~~~~~--~~i~~el~~~d 191 (359)
.. .....++++|++++|+|+++. .+++.+.||+|..... +.+.+.+....
T Consensus 81 ~~-------~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~ 153 (190)
T 1m2o_B 81 RR-------LWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNAVSEAELRSALGLLN 153 (190)
T ss_dssp TT-------SGGGGCTTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTCSS
T ss_pred HH-------HHHHHHhcCCEEEEEEECCChHHHHHHHHHHHHHHcchhhcCCCEEEEEECCCCcCCCCHHHHHHHhCCcc
Confidence 33 233445789999999998763 3578999999976421 11111111000
Q ss_pred HHHHHHHHHHHhh--hccccccchhhHHHHHHHHHHHHHH
Q 018241 192 LDQIEKRMEKLKK--GKAKDSQSKLKEDAEKAALEKIQQA 229 (359)
Q Consensus 192 ~~~l~~~~~~~~~--~~~~~~~Sa~~~~~~~~ll~~i~~~ 229 (359)
.. ++ ..+.. ......+||+++.++.++++.+.+.
T Consensus 154 ~~--~~--~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~ 189 (190)
T 1m2o_B 154 TT--GS--QRIEGQRPVEVFMCSVVMRNGYLEAFQWLSQY 189 (190)
T ss_dssp CC--C-----CCSSCCEEEEECBTTTTBSHHHHHHHHHTT
T ss_pred cc--cc--ccccccceEEEEEeECCcCCCHHHHHHHHHhh
Confidence 00 00 00000 0111467999999999998887654
No 95
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=99.52 E-value=1.9e-14 Score=125.11 Aligned_cols=145 Identities=17% Similarity=0.137 Sum_probs=89.7
Q ss_pred CCcEEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCCcCC
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~~~ 134 (359)
..++|+++|.+|||||||+|+|+++... ....|..+.+.....+.+++. ...+.+|||||..+.
T Consensus 19 ~~~ki~v~G~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~---------------~~~~~l~Dt~G~~~~ 82 (189)
T 1z06_A 19 RIFKIIVIGDSNVGKTCLTYRFCAGRFP-DRTEATIGVDFRERAVDIDGE---------------RIKIQLWDTAGQERF 82 (189)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSSCC-SSCCCCCSCCEEEEEEEETTE---------------EEEEEEEECCCSHHH
T ss_pred ceEEEEEECCCCCCHHHHHHHHHcCCCC-CCCCCCcceEEEEEEEEECCE---------------EEEEEEEECCCchhh
Confidence 3489999999999999999999955443 223343444444445554431 246999999997432
Q ss_pred CCcCcchhhhHhhHHHhcccceEEeecCC---------------------CccEEEeCCcccCCcchHHHHhhhhhccHH
Q 018241 135 ASQGEGLGNKFLSHIREVDSILQVVRCFE---------------------DNDIVHVNGKVDPKSDVDVINLELVFSDLD 193 (359)
Q Consensus 135 ~~~~~~~~~~~l~~i~~aD~il~Vvd~~~---------------------~~~v~~v~nk~d~~~~~~~i~~el~~~d~~ 193 (359)
.. ......++.+|++++|+|+++ +.+++.+.||+|.....+... +
T Consensus 83 ~~------~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~--------~ 148 (189)
T 1z06_A 83 RK------SMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPT--------D 148 (189)
T ss_dssp HT------TTHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGGCCSCH--------H
T ss_pred hh------hhhHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceeCH--------H
Confidence 20 133455789999999999875 236789999999754321111 1
Q ss_pred HHHHHHHHHhhhccccccchhhH---HHHHHHHHHHHHHhc
Q 018241 194 QIEKRMEKLKKGKAKDSQSKLKE---DAEKAALEKIQQALM 231 (359)
Q Consensus 194 ~l~~~~~~~~~~~~~~~~Sa~~~---~~~~~ll~~i~~~L~ 231 (359)
......... . .....+||+.+ .++.++++.+.+.+.
T Consensus 149 ~~~~~~~~~-~-~~~~~~Sa~~~~~~~~i~~l~~~l~~~i~ 187 (189)
T 1z06_A 149 LAQKFADTH-S-MPLFETSAKNPNDNDHVEAIFMTLAHKLK 187 (189)
T ss_dssp HHHHHHHHT-T-CCEEECCSSSGGGGSCHHHHHHHHC----
T ss_pred HHHHHHHHc-C-CEEEEEeCCcCCcccCHHHHHHHHHHHHh
Confidence 111111111 1 11146788988 888888888876664
No 96
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.52 E-value=7.1e-14 Score=121.97 Aligned_cols=142 Identities=18% Similarity=0.171 Sum_probs=91.5
Q ss_pred CCcEEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCCcCC
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~~~ 134 (359)
..++|+++|.+|||||||+|+|++.....+...| |.......+... ...+.+|||||..+.
T Consensus 16 ~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~--t~~~~~~~~~~~-----------------~~~~~i~Dt~G~~~~ 76 (199)
T 4bas_A 16 TKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITA--TVGYNVETFEKG-----------------RVAFTVFDMGGAKKF 76 (199)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHSCCC----CCCC--CSSEEEEEEEET-----------------TEEEEEEEECCSGGG
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCCCccccccc--ccceeEEEEEeC-----------------CEEEEEEECCCCHhH
Confidence 3479999999999999999999965544332111 222333333322 467999999998644
Q ss_pred CCcCcchhhhHhhHHHhcccceEEeecCCC----------------------------ccEEEeCCcccCCcch--HHHH
Q 018241 135 ASQGEGLGNKFLSHIREVDSILQVVRCFED----------------------------NDIVHVNGKVDPKSDV--DVIN 184 (359)
Q Consensus 135 ~~~~~~~~~~~l~~i~~aD~il~Vvd~~~~----------------------------~~v~~v~nk~d~~~~~--~~i~ 184 (359)
.. .....++.+|++++|+|+++. .+++.+.||+|...+. +.+.
T Consensus 77 ~~-------~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~ 149 (199)
T 4bas_A 77 RG-------LWETYYDNIDAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAKTAAELV 149 (199)
T ss_dssp GG-------GGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCCCHHHHH
T ss_pred HH-------HHHHHHhcCCEEEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCCCHHHHH
Confidence 33 334556889999999998762 3578899999977542 1222
Q ss_pred hhhhhccHHHHHHHHHHH-h-hhccccccchhhHHHHHHHHHHHHHHhcC
Q 018241 185 LELVFSDLDQIEKRMEKL-K-KGKAKDSQSKLKEDAEKAALEKIQQALMD 232 (359)
Q Consensus 185 ~el~~~d~~~l~~~~~~~-~-~~~~~~~~Sa~~~~~~~~ll~~i~~~L~~ 232 (359)
.++. ...+ . .......+||+.+.++.++++.+.+.+.+
T Consensus 150 ~~~~----------~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~ 189 (199)
T 4bas_A 150 EILD----------LTTLMGDHPFVIFASNGLKGTGVHEGFSWLQETASR 189 (199)
T ss_dssp HHHT----------HHHHHTTSCEEEEECBTTTTBTHHHHHHHHHHHHHH
T ss_pred HHhc----------chhhccCCeeEEEEeeCCCccCHHHHHHHHHHHHHH
Confidence 1111 0111 0 01111568999999999999999888753
No 97
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=99.52 E-value=7.7e-14 Score=122.53 Aligned_cols=149 Identities=15% Similarity=0.057 Sum_probs=89.8
Q ss_pred CCcEEEEEecCCCChhHHHHHHHhcccc-ccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCCcC
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVVENGKA-QAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVK 133 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~~~~~~-~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~~ 133 (359)
..++|+++|.+|||||||+|+|++.... ...+..++ +.....+.+++. ...+.+|||||...
T Consensus 27 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~--~~~~~~~~~~~~---------------~~~l~i~Dt~G~~~ 89 (199)
T 2p5s_A 27 KAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGV--DFQMKTLIVDGE---------------RTVLQLWDTAGQER 89 (199)
T ss_dssp -CEEEEEESSTTSSHHHHHHHHHHCCCC------------CEEEEEEETTE---------------EEEEEEEECTTCTT
T ss_pred CCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccc--eeEEEEEEECCE---------------EEEEEEEECCCCcc
Confidence 4589999999999999999999965432 12222222 233333444321 24699999999754
Q ss_pred CCCcCcchhhhHhhHHHhcccceEEeecCC--------------------CccEEEeCCcccCCcchHHHHhhhhhccHH
Q 018241 134 GASQGEGLGNKFLSHIREVDSILQVVRCFE--------------------DNDIVHVNGKVDPKSDVDVINLELVFSDLD 193 (359)
Q Consensus 134 ~~~~~~~~~~~~l~~i~~aD~il~Vvd~~~--------------------~~~v~~v~nk~d~~~~~~~i~~el~~~d~~ 193 (359)
.. ......++.+|++++|+|+++ +.+++.+.||+|...+... . +......+
T Consensus 90 ~~-------~~~~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~~-~-~~~~v~~~ 160 (199)
T 2p5s_A 90 FR-------SIAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKADIRDTAAT-E-GQKCVPGH 160 (199)
T ss_dssp CH-------HHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHC---CCEEEEEECGGGHHHHHH-T-TCCCCCHH
T ss_pred hh-------hhHHHHHhhCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCCEEEEEECccccccccc-c-cccccCHH
Confidence 32 245667789999999999876 2368899999996532110 0 00011111
Q ss_pred HHHHHHHHHhhhccccccchhhHHHHHHHHHHHHHHhc
Q 018241 194 QIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALM 231 (359)
Q Consensus 194 ~l~~~~~~~~~~~~~~~~Sa~~~~~~~~ll~~i~~~L~ 231 (359)
..+...... . .....+||+.+.++.++++.+.+.+.
T Consensus 161 ~~~~~~~~~-~-~~~~~~SA~~g~gv~el~~~l~~~i~ 196 (199)
T 2p5s_A 161 FGEKLAMTY-G-ALFCETSAKDGSNIVEAVLHLAREVK 196 (199)
T ss_dssp HHHHHHHHH-T-CEEEECCTTTCTTHHHHHHHHHHHHT
T ss_pred HHHHHHHHc-C-CeEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 111111111 1 11146899999999999999888774
No 98
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.52 E-value=6.1e-14 Score=132.48 Aligned_cols=152 Identities=13% Similarity=0.050 Sum_probs=99.5
Q ss_pred CcEEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCCcCCC
Q 018241 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA 135 (359)
Q Consensus 56 ~~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~~~~ 135 (359)
.+||+++|.||||||||+|+++++....+++.+++|++...+.+.+.+ +.++.+|||||..+..
T Consensus 3 ~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~~~~~~~----------------~~~l~i~Dt~G~~~~~ 66 (307)
T 3r7w_A 3 GSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSHLRFLG----------------NMTLNLWDCGGQDVFM 66 (307)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEEEEEETT----------------TEEEEEEEECCSHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEEEEEeCC----------------ceEEEEEECCCcHHHh
Confidence 479999999999999999999976667777889999999888877643 4679999999986431
Q ss_pred CcCcchhhhHhhHHHhcccceEEeecCCC----------------------ccEEEeCCcccCCcc--hHHHHhhhhhcc
Q 018241 136 SQGEGLGNKFLSHIREVDSILQVVRCFED----------------------NDIVHVNGKVDPKSD--VDVINLELVFSD 191 (359)
Q Consensus 136 ~~~~~~~~~~l~~i~~aD~il~Vvd~~~~----------------------~~v~~v~nk~d~~~~--~~~i~~el~~~d 191 (359)
.. .........++++|++++|+|+++. .+++.+.||+|...+ ...+.. ...
T Consensus 67 ~~--~~~~~~~~~~~~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~~~~~r~~~~~-v~~-- 141 (307)
T 3r7w_A 67 EN--YFTKQKDHIFQMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLVQLDKREELFQ-IMM-- 141 (307)
T ss_dssp HH--HHTTTHHHHHTTCSEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHH-HHH--
T ss_pred hh--hhhhHHHHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccchhhhhHHHH-HHH--
Confidence 00 0011334556889999999998863 357889999998752 211100 000
Q ss_pred HHHHHHHHHHHhh-hccccccchhhHHHHHHHHHHHHHHh
Q 018241 192 LDQIEKRMEKLKK-GKAKDSQSKLKEDAEKAALEKIQQAL 230 (359)
Q Consensus 192 ~~~l~~~~~~~~~-~~~~~~~Sa~~~~~~~~ll~~i~~~L 230 (359)
+.+.+....+.. ......+||++ .++.+++..+...+
T Consensus 142 -~~~~~~~~~~g~~~~~~~~tSa~~-~~i~e~~~~iv~~l 179 (307)
T 3r7w_A 142 -KNLSETSSEFGFPNLIGFPTSIWD-ESLYKAWSQIVCSL 179 (307)
T ss_dssp -HHHHHHHHTTTCCSCEEEECCTTS-SHHHHHHHHHHHTT
T ss_pred -HHHHHHHHHcCCCCeEEEEeeecC-ChHHHHHHHHHHHH
Confidence 111111111110 01114678888 67777777766655
No 99
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=99.51 E-value=6.9e-15 Score=126.90 Aligned_cols=144 Identities=14% Similarity=0.099 Sum_probs=71.8
Q ss_pred CCcEEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCCcCC
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~~~ 134 (359)
..++|+++|.+|||||||+|+|++. .......|.++.+.....+.+++. ...+.+|||||....
T Consensus 7 ~~~ki~v~G~~~~GKssl~~~l~~~-~~~~~~~~t~~~~~~~~~~~~~~~---------------~~~~~l~Dt~G~~~~ 70 (183)
T 2fu5_C 7 YLFKLLLIGDSGVGKTCVLFRFSED-AFNSTFISTIGIDFKIRTIELDGK---------------RIKLQIWDTAGQERF 70 (183)
T ss_dssp EEEEEEEECCCCC-----------------CHHHHHCEEEEEEEEEETTE---------------EEEEEEEEC------
T ss_pred CceEEEEECCCCCCHHHHHHHHHhC-CCCCCCCCcccceeEEEEEEECCE---------------EEEEEEEcCCCChhh
Confidence 3479999999999999999999944 333333444444444444544431 256999999998654
Q ss_pred CCcCcchhhhHhhHHHhcccceEEeecCC--------------------CccEEEeCCcccCCcchHHHHhhhhhccHHH
Q 018241 135 ASQGEGLGNKFLSHIREVDSILQVVRCFE--------------------DNDIVHVNGKVDPKSDVDVINLELVFSDLDQ 194 (359)
Q Consensus 135 ~~~~~~~~~~~l~~i~~aD~il~Vvd~~~--------------------~~~v~~v~nk~d~~~~~~~i~~el~~~d~~~ 194 (359)
.. .....++++|++++|+|+++ +.+++.+.||+|...+..... +.
T Consensus 71 ~~-------~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~--------~~ 135 (183)
T 2fu5_C 71 RT-------ITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSK--------ER 135 (183)
T ss_dssp ----------CCTTTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEEC--CCSCCCSCH--------HH
T ss_pred hh-------hHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECccCCccCcCCH--------HH
Confidence 33 23345678999999999876 236788999999764321111 11
Q ss_pred HHHHHHHHhhhccccccchhhHHHHHHHHHHHHHHhc
Q 018241 195 IEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALM 231 (359)
Q Consensus 195 l~~~~~~~~~~~~~~~~Sa~~~~~~~~ll~~i~~~L~ 231 (359)
......... .....+||+++.++.++++.+.+.+.
T Consensus 136 ~~~~~~~~~--~~~~~~Sa~~~~~i~~l~~~l~~~i~ 170 (183)
T 2fu5_C 136 GEKLALDYG--IKFMETSAKANINVENAFFTLARDIK 170 (183)
T ss_dssp HHHHHHHHT--CEEEECCC---CCHHHHHHHHHHHHH
T ss_pred HHHHHHHcC--CeEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 111111111 11256899999999999988877764
No 100
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.51 E-value=3.1e-14 Score=123.62 Aligned_cols=140 Identities=17% Similarity=0.204 Sum_probs=92.7
Q ss_pred CCcEEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCCcCC
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~~~ 134 (359)
..++|+++|.+|||||||+|+|+++.... ..| |.......+.+. ..++.+|||||..+.
T Consensus 21 ~~~~i~v~G~~~~GKssli~~l~~~~~~~--~~~--t~~~~~~~~~~~-----------------~~~~~~~Dt~G~~~~ 79 (189)
T 2x77_A 21 RKIRVLMLGLDNAGKTSILYRLHLGDVVT--TVP--TVGVNLETLQYK-----------------NISFEVWDLGGQTGV 79 (189)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCCSCCEE--ECS--STTCCEEEEEET-----------------TEEEEEEEECCSSSS
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCC--cCC--CCceEEEEEEEC-----------------CEEEEEEECCCCHhH
Confidence 45899999999999999999998554432 222 333344444443 357999999998654
Q ss_pred CCcCcchhhhHhhHHHhcccceEEeecCCC---------------------ccEEEeCCcccCCcch--HHHHhhhhhcc
Q 018241 135 ASQGEGLGNKFLSHIREVDSILQVVRCFED---------------------NDIVHVNGKVDPKSDV--DVINLELVFSD 191 (359)
Q Consensus 135 ~~~~~~~~~~~l~~i~~aD~il~Vvd~~~~---------------------~~v~~v~nk~d~~~~~--~~i~~el~~~d 191 (359)
.. .....++++|++++|+|+++. .+++.+.||+|...+. ..+..++....
T Consensus 80 ~~-------~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~ 152 (189)
T 2x77_A 80 RP-------YWRCYFSDTDAVIYVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLPDAASEAEIAEQLGVSS 152 (189)
T ss_dssp CC-------CCSSSSTTCCEEEEEEETTCCTTHHHHHHHHHHHHTCSTTTTCEEEEEEECTTSTTCCCHHHHHHHTTGGG
T ss_pred HH-------HHHHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHhhhhcCCCeEEEEEECCCCcCCCCHHHHHHHhChhh
Confidence 43 223345789999999998762 3578899999976532 12211111000
Q ss_pred HHHHHHHHHHHhh-hccccccchhhHHHHHHHHHHHHHHhcC
Q 018241 192 LDQIEKRMEKLKK-GKAKDSQSKLKEDAEKAALEKIQQALMD 232 (359)
Q Consensus 192 ~~~l~~~~~~~~~-~~~~~~~Sa~~~~~~~~ll~~i~~~L~~ 232 (359)
... ......+||+++.++.++++.+.+.+.+
T Consensus 153 ----------~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 184 (189)
T 2x77_A 153 ----------IMNRTWTIVKSSSKTGDGLVEGMDWLVERLRE 184 (189)
T ss_dssp ----------CCSSCEEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred ----------ccCCceEEEEccCCCccCHHHHHHHHHHHHHh
Confidence 000 0011468999999999999999888854
No 101
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.51 E-value=3.2e-14 Score=122.55 Aligned_cols=140 Identities=17% Similarity=0.220 Sum_probs=88.9
Q ss_pred CCcEEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCCcCC
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~~~ 134 (359)
..++|+++|.+|||||||+|+|+++......+ |.......+.++ +.++.+|||||....
T Consensus 17 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~----t~~~~~~~~~~~-----------------~~~~~i~Dt~G~~~~ 75 (183)
T 1moz_A 17 KELRILILGLDGAGKTTILYRLQIGEVVTTKP----TIGFNVETLSYK-----------------NLKLNVWDLGGQTSI 75 (183)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCCSEEEEECS----STTCCEEEEEET-----------------TEEEEEEEEC----C
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCcCccCC----cCccceEEEEEC-----------------CEEEEEEECCCCHhH
Confidence 56899999999999999999999555433222 222333444443 357999999999754
Q ss_pred CCcCcchhhhHhhHHHhcccceEEeecCCC---------------------ccEEEeCCcccCCcch--HHHHhhhhhcc
Q 018241 135 ASQGEGLGNKFLSHIREVDSILQVVRCFED---------------------NDIVHVNGKVDPKSDV--DVINLELVFSD 191 (359)
Q Consensus 135 ~~~~~~~~~~~l~~i~~aD~il~Vvd~~~~---------------------~~v~~v~nk~d~~~~~--~~i~~el~~~d 191 (359)
.. .+...++++|++++|+|+++. .+++.+.||+|...+. +.+...+....
T Consensus 76 ~~-------~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~ 148 (183)
T 1moz_A 76 RP-------YWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGALSASEVSKELNLVE 148 (183)
T ss_dssp CT-------TGGGTTTTEEEEEEEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTCCCHHHHHHHTTTTT
T ss_pred HH-------HHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhCCCeEEEEEECCCCCCCCCHHHHHHHhCccc
Confidence 43 334556789999999998652 3578899999976431 12211111000
Q ss_pred HHHHHHHHHHHhhhccccccchhhHHHHHHHHHHHHHHhc
Q 018241 192 LDQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALM 231 (359)
Q Consensus 192 ~~~l~~~~~~~~~~~~~~~~Sa~~~~~~~~ll~~i~~~L~ 231 (359)
.. ........+||+++.++.++++.+.+.+.
T Consensus 149 ~~---------~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~ 179 (183)
T 1moz_A 149 LK---------DRSWSIVASSAIKGEGITEGLDWLIDVIK 179 (183)
T ss_dssp CC---------SSCEEEEEEBGGGTBTHHHHHHHHHHHHH
T ss_pred cc---------CCceEEEEccCCCCcCHHHHHHHHHHHHH
Confidence 00 00001146899999999999999888774
No 102
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.51 E-value=8.3e-14 Score=121.44 Aligned_cols=149 Identities=15% Similarity=0.120 Sum_probs=95.5
Q ss_pred CcEEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCCcCCC
Q 018241 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA 135 (359)
Q Consensus 56 ~~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~~~~ 135 (359)
.++|+++|.+|||||||+|+|+++.. ...+..|+.+.....+.+.+. ...+.+|||||..+..
T Consensus 18 ~~ki~v~G~~~~GKssli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~---------------~~~~~i~D~~G~~~~~ 80 (194)
T 2atx_A 18 MLKCVVVGDGAVGKTCLLMSYANDAF--PEEYVPTVFDHYAVSVTVGGK---------------QYLLGLYDTAGQEDYD 80 (194)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSSC--CCSCCCSSCCCEEEEEESSSC---------------EEEEEEECCCCSSSST
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCC--CCCCCCcccceeEEEEEECCE---------------EEEEEEEECCCCcchh
Confidence 47999999999999999999996533 234455554444444444332 2468999999986554
Q ss_pred CcCcchhhhHhhHHHhcccceEEeecCC--------------------CccEEEeCCcccCCcchHHHHhhhh-----hc
Q 018241 136 SQGEGLGNKFLSHIREVDSILQVVRCFE--------------------DNDIVHVNGKVDPKSDVDVINLELV-----FS 190 (359)
Q Consensus 136 ~~~~~~~~~~l~~i~~aD~il~Vvd~~~--------------------~~~v~~v~nk~d~~~~~~~i~~el~-----~~ 190 (359)
. .....++++|++++|+|+++ +.+++.+.||+|...+...... +. ..
T Consensus 81 ~-------~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~-~~~~~~~~v 152 (194)
T 2atx_A 81 R-------LRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDDPKTLAR-LNDMKEKPI 152 (194)
T ss_dssp T-------TGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECTTSTTCHHHHHH-HTTTTCCCC
T ss_pred H-------HHHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhcccccchhh-cccccCccc
Confidence 3 23345678999999999866 2357899999998765322111 10 01
Q ss_pred cHHHHHHHHHHHhhhccccccchhhHHHHHHHHHHHHHHh
Q 018241 191 DLDQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQAL 230 (359)
Q Consensus 191 d~~~l~~~~~~~~~~~~~~~~Sa~~~~~~~~ll~~i~~~L 230 (359)
..+.......... ......+||+.+.++.++++.+.+.+
T Consensus 153 ~~~~~~~~~~~~~-~~~~~~~Sa~~g~gi~~l~~~l~~~i 191 (194)
T 2atx_A 153 CVEQGQKLAKEIG-ACCYVECSALTQKGLKTVFDEAIIAI 191 (194)
T ss_dssp CHHHHHHHHHHHT-CSCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcC-CcEEEEeeCCCCCCHHHHHHHHHHHH
Confidence 1111222111111 11114679999999999998887765
No 103
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=99.51 E-value=1.6e-14 Score=127.21 Aligned_cols=144 Identities=17% Similarity=0.152 Sum_probs=88.5
Q ss_pred CCcEEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCCcCC
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~~~ 134 (359)
..++|+++|.+|||||||+|+|+++.. .....|..+.+.....+.+++. ...+.||||||....
T Consensus 24 ~~~ki~v~G~~~~GKSsLi~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~---------------~~~l~l~Dt~G~~~~ 87 (200)
T 2o52_A 24 FLFKFLVIGSAGTGKSCLLHQFIENKF-KQDSNHTIGVEFGSRVVNVGGK---------------TVKLQIWDTAGQERF 87 (200)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHC-------------CCEEEEEEEETTE---------------EEEEEEECCTTHHHH
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCCC-CccCCCcccceeEEEEEEECCe---------------eeEEEEEcCCCcHhH
Confidence 458999999999999999999995443 3333444444454455555431 246999999997543
Q ss_pred CCcCcchhhhHhhHHHhcccceEEeecCC--------------------CccEEEeCCcccCCcchHHHHhhhhhccHHH
Q 018241 135 ASQGEGLGNKFLSHIREVDSILQVVRCFE--------------------DNDIVHVNGKVDPKSDVDVINLELVFSDLDQ 194 (359)
Q Consensus 135 ~~~~~~~~~~~l~~i~~aD~il~Vvd~~~--------------------~~~v~~v~nk~d~~~~~~~i~~el~~~d~~~ 194 (359)
.. .....++.+|++++|+|+++ +.+++.+.||+|...+... ....
T Consensus 88 ~~-------~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v--------~~~~ 152 (200)
T 2o52_A 88 RS-------VTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLDPEREV--------TFLE 152 (200)
T ss_dssp SC-------CCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTCTTCEEEEEEECGGGGGGCCS--------CHHH
T ss_pred HH-------HHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCccccccc--------CHHH
Confidence 32 23456788999999999876 2357889999997532111 0011
Q ss_pred HHHHHHHHhhhccccccchhhHHHHHHHHHHHHHHhc
Q 018241 195 IEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALM 231 (359)
Q Consensus 195 l~~~~~~~~~~~~~~~~Sa~~~~~~~~ll~~i~~~L~ 231 (359)
......... .....+||+.+.++.++++.+.+.+.
T Consensus 153 ~~~~~~~~~--~~~~~~SA~~g~gi~~l~~~l~~~i~ 187 (200)
T 2o52_A 153 ASRFAQENE--LMFLETSALTGENVEEAFLKCARTIL 187 (200)
T ss_dssp HHHHHHHTT--CEEEEECTTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHcC--CEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 111111111 11146899999999999888877663
No 104
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.51 E-value=1.3e-14 Score=126.47 Aligned_cols=146 Identities=16% Similarity=0.139 Sum_probs=93.4
Q ss_pred ccCCcEEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCCc
Q 018241 53 ISMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLV 132 (359)
Q Consensus 53 ~~~~~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~ 132 (359)
....++|+|+|.+|||||||+|+|++..... ...+..+.+.....+.+.+. ...+.||||||..
T Consensus 20 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~---------------~~~~~i~Dt~G~~ 83 (191)
T 3dz8_A 20 FDYMFKLLIIGNSSVGKTSFLFRYADDTFTP-AFVSTVGIDFKVKTVYRHEK---------------RVKLQIWDTAGQE 83 (191)
T ss_dssp EEECEEEEEEESTTSSHHHHHHHHHHHTTCC-CEEEEETTTEEEEEEEETTT---------------TEEEEEECHHHHH
T ss_pred cCeeeEEEEECCCCcCHHHHHHHHhcCCCCc-ccCCCeeeEEEEEEEEECCE---------------EEEEEEEeCCChH
Confidence 3456899999999999999999999654321 11122222233333333321 3579999999964
Q ss_pred CCCCcCcchhhhHhhHHHhcccceEEeecCC--------------------CccEEEeCCcccCCcchHHHHhhhhhccH
Q 018241 133 KGASQGEGLGNKFLSHIREVDSILQVVRCFE--------------------DNDIVHVNGKVDPKSDVDVINLELVFSDL 192 (359)
Q Consensus 133 ~~~~~~~~~~~~~l~~i~~aD~il~Vvd~~~--------------------~~~v~~v~nk~d~~~~~~~i~~el~~~d~ 192 (359)
... ......++.+|++++|+|+++ +.+++.+.||+|...+.....
T Consensus 84 ~~~-------~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~-------- 148 (191)
T 3dz8_A 84 RYR-------TITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDMEEERVVPT-------- 148 (191)
T ss_dssp HCH-------HHHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCH--------
T ss_pred HHH-------HHHHHHHccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCH--------
Confidence 332 245566789999999999875 346888999999653321111
Q ss_pred HHHHHHHHHHhhhccccccchhhHHHHHHHHHHHHHHhc
Q 018241 193 DQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALM 231 (359)
Q Consensus 193 ~~l~~~~~~~~~~~~~~~~Sa~~~~~~~~ll~~i~~~L~ 231 (359)
+..+....... .....+||+.+.++.++++.+.+.+.
T Consensus 149 ~~~~~~~~~~~--~~~~~~Sa~~~~gi~~l~~~l~~~i~ 185 (191)
T 3dz8_A 149 EKGQLLAEQLG--FDFFEASAKENISVRQAFERLVDAIC 185 (191)
T ss_dssp HHHHHHHHHHT--CEEEECBTTTTBSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcC--CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 11111111111 11256899999999999998887764
No 105
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.51 E-value=1.7e-14 Score=126.40 Aligned_cols=139 Identities=17% Similarity=0.156 Sum_probs=88.7
Q ss_pred CCcEEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCCcCC
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~~~ 134 (359)
..++|+++|.+|||||||+|+|+++.... . ..|+......+... ...+.+|||||..+.
T Consensus 28 ~~~ki~v~G~~~vGKSsLi~~l~~~~~~~--~--~~t~~~~~~~~~~~-----------------~~~~~i~Dt~G~~~~ 86 (192)
T 2b6h_A 28 KQMRILMVGLDAAGKTTILYKLKLGEIVT--T--IPTIGFNVETVEYK-----------------NICFTVWDVGGQDKI 86 (192)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCSSCCEE--E--EEETTEEEEEEEET-----------------TEEEEEEECC-----
T ss_pred CccEEEEECCCCCCHHHHHHHHHhCCccc--c--CCcCceeEEEEEEC-----------------CEEEEEEECCCCHhH
Confidence 45899999999999999999998554331 1 12444334444433 467999999998654
Q ss_pred CCcCcchhhhHhhHHHhcccceEEeecCCC---------------------ccEEEeCCcccCCcch--HHHHhhhhhcc
Q 018241 135 ASQGEGLGNKFLSHIREVDSILQVVRCFED---------------------NDIVHVNGKVDPKSDV--DVINLELVFSD 191 (359)
Q Consensus 135 ~~~~~~~~~~~l~~i~~aD~il~Vvd~~~~---------------------~~v~~v~nk~d~~~~~--~~i~~el~~~d 191 (359)
.. .....++++|++++|+|+++. .+++.+.||+|...+. +.+..++....
T Consensus 87 ~~-------~~~~~~~~~d~iilv~D~~~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~ 159 (192)
T 2b6h_A 87 RP-------LWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNAMPVSELTDKLGLQH 159 (192)
T ss_dssp CT-------THHHHHHTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGG
T ss_pred HH-------HHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHhcccccCCCeEEEEEECCCCCCCCCHHHHHHHhCccc
Confidence 33 344567899999999998762 3578899999976431 11111111000
Q ss_pred HHHHHHHHHHHhh-hccccccchhhHHHHHHHHHHHHHHhc
Q 018241 192 LDQIEKRMEKLKK-GKAKDSQSKLKEDAEKAALEKIQQALM 231 (359)
Q Consensus 192 ~~~l~~~~~~~~~-~~~~~~~Sa~~~~~~~~ll~~i~~~L~ 231 (359)
... ......+||+.+.++.++++.+.+.+.
T Consensus 160 ----------~~~~~~~~~~~SA~~g~gi~~l~~~l~~~i~ 190 (192)
T 2b6h_A 160 ----------LRSRTWYVQATCATQGTGLYDGLDWLSHELS 190 (192)
T ss_dssp ----------CSSCCEEEEECBTTTTBTHHHHHHHHHHHTT
T ss_pred ----------ccCCceEEEECcCCCcCCHHHHHHHHHHHHh
Confidence 000 001146899999999999999988774
No 106
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=99.51 E-value=5.1e-14 Score=121.87 Aligned_cols=152 Identities=16% Similarity=0.136 Sum_probs=91.2
Q ss_pred CcEEEEEecCCCChhHHHHHHHhccccccCCCCceeccce-eEEEEeCCCccchhccccccccccCceEEEEecCCCcCC
Q 018241 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPN-VGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (359)
Q Consensus 56 ~~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~-~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~~~ 134 (359)
.++|+++|.+|||||||+|+|++.... ....|..+.+.. ...+.+++... .... ......+.+|||||....
T Consensus 11 ~~ki~v~G~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~----~~~~--~~~~~~~~l~Dt~G~~~~ 83 (195)
T 3bc1_A 11 LIKFLALGDSGVGKTSVLYQYTDGKFN-SKFITTVGIDFREKRVVYRANGPD----GAVG--RGQRIHLQLWDTAGLERF 83 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCC-CSCCCCCSEEEEEEEEEECTTSCC----CSSC--CCEEEEEEEEEECCSGGG
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCC-cCcccccceeeeeEEEEEecCCcc----cccc--cCcEEEEEEEeCCCcHHH
Confidence 479999999999999999999954432 222222222222 22333332100 0000 000247999999998432
Q ss_pred CCcCcchhhhHhhHHHhcccceEEeecCC---------------------CccEEEeCCcccCCcchHHHHhhhhhccHH
Q 018241 135 ASQGEGLGNKFLSHIREVDSILQVVRCFE---------------------DNDIVHVNGKVDPKSDVDVINLELVFSDLD 193 (359)
Q Consensus 135 ~~~~~~~~~~~l~~i~~aD~il~Vvd~~~---------------------~~~v~~v~nk~d~~~~~~~i~~el~~~d~~ 193 (359)
...+...++++|++++|+|+++ ..+++.+.||+|...+.... .+
T Consensus 84 -------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~--------~~ 148 (195)
T 3bc1_A 84 -------RSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLEDQRAVK--------EE 148 (195)
T ss_dssp -------HHHHHHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEEECTTCGGGCCSC--------HH
T ss_pred -------HHHHHHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccC--------HH
Confidence 2245667789999999999865 23678999999975422110 11
Q ss_pred HHHHHHHHHhhhccccccchhhHHHHHHHHHHHHHHhc
Q 018241 194 QIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALM 231 (359)
Q Consensus 194 ~l~~~~~~~~~~~~~~~~Sa~~~~~~~~ll~~i~~~L~ 231 (359)
.+........ .....+||+.+.++.++++.+.+.+.
T Consensus 149 ~~~~~~~~~~--~~~~~~Sa~~~~~v~~l~~~l~~~~~ 184 (195)
T 3bc1_A 149 EARELAEKYG--IPYFETSAANGTNISHAIEMLLDLIM 184 (195)
T ss_dssp HHHHHHHHHT--CCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHcC--CCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 1122111111 11256899999999999988887764
No 107
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=99.51 E-value=7.1e-14 Score=120.46 Aligned_cols=143 Identities=17% Similarity=0.099 Sum_probs=92.4
Q ss_pred CCcEEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCCcCC
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~~~ 134 (359)
..++|+++|.+|||||||+|+|+++... ..+..++.......+.+++. ...+.+|||||....
T Consensus 17 ~~~ki~v~G~~~~GKSsl~~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~---------------~~~l~i~Dt~G~~~~ 79 (183)
T 3kkq_A 17 PTYKLVVVGDGGVGKSALTIQFFQKIFV--DDYDPTIEDSYLKHTEIDNQ---------------WAILDVLDTAGQEEF 79 (183)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCCC--SCCCTTCCEEEEEEEEETTE---------------EEEEEEEECCSCGGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCC--CCCCCCccceeEEEEEeCCc---------------EEEEEEEECCCchhh
Confidence 3589999999999999999999955332 23333443333444444321 234778999997544
Q ss_pred CCcCcchhhhHhhHHHhcccceEEeecCCC---------------------ccEEEeCCcccCCcchHHHHhhhhhccHH
Q 018241 135 ASQGEGLGNKFLSHIREVDSILQVVRCFED---------------------NDIVHVNGKVDPKSDVDVINLELVFSDLD 193 (359)
Q Consensus 135 ~~~~~~~~~~~l~~i~~aD~il~Vvd~~~~---------------------~~v~~v~nk~d~~~~~~~i~~el~~~d~~ 193 (359)
.. .....++++|++++|+|+++. .+++.+.||+|...+..... +
T Consensus 80 ~~-------~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~v~~--------~ 144 (183)
T 3kkq_A 80 SA-------MREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTR--------D 144 (183)
T ss_dssp CS-------SHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCH--------H
T ss_pred HH-------HHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCCchhccCcCH--------H
Confidence 33 334557889999999998762 35889999999764221111 1
Q ss_pred HHHHHHHHHhhhccccccchh-hHHHHHHHHHHHHHHhc
Q 018241 194 QIEKRMEKLKKGKAKDSQSKL-KEDAEKAALEKIQQALM 231 (359)
Q Consensus 194 ~l~~~~~~~~~~~~~~~~Sa~-~~~~~~~ll~~i~~~L~ 231 (359)
.......... .....+||+ .+.++.++++.+.+.+.
T Consensus 145 ~~~~~~~~~~--~~~~~~Sa~~~~~~v~~l~~~l~~~i~ 181 (183)
T 3kkq_A 145 QGKEMATKYN--IPYIETSAKDPPLNVDKTFHDLVRVIR 181 (183)
T ss_dssp HHHHHHHHHT--CCEEEEBCSSSCBSHHHHHHHHHHHHH
T ss_pred HHHHHHHHhC--CeEEEeccCCCCCCHHHHHHHHHHHHh
Confidence 1122111111 112568999 88899999998887764
No 108
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=99.51 E-value=2.8e-14 Score=125.83 Aligned_cols=146 Identities=12% Similarity=0.092 Sum_probs=90.8
Q ss_pred CCcEEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCCcCC
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~~~ 134 (359)
..++|+++|.+|||||||+|+|++.... ....|..+.+.....+.+.+. ...+.+|||||..+.
T Consensus 28 ~~~ki~vvG~~~vGKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~---------------~~~l~i~Dt~G~~~~ 91 (201)
T 2hup_A 28 FLFKLVLVGDASVGKTCVVQRFKTGAFS-ERQGSTIGVDFTMKTLEIQGK---------------RVKLQIWDTAGQERF 91 (201)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSCC-----------CEEEEEEEETTE---------------EEEEEEECCTTCGGG
T ss_pred cceEEEEECcCCCCHHHHHHHHhhCCCC-CCCCCCcceEEEEEEEEECCE---------------EEEEEEEECCCcHhH
Confidence 4489999999999999999999955432 222222223333444444321 247999999997533
Q ss_pred CCcCcchhhhHhhHHHhcccceEEeecCC--------------------CccEEEeCCcccCCcchHHHHhhhhhccHHH
Q 018241 135 ASQGEGLGNKFLSHIREVDSILQVVRCFE--------------------DNDIVHVNGKVDPKSDVDVINLELVFSDLDQ 194 (359)
Q Consensus 135 ~~~~~~~~~~~l~~i~~aD~il~Vvd~~~--------------------~~~v~~v~nk~d~~~~~~~i~~el~~~d~~~ 194 (359)
. ......++.+|++++|+|+++ +.+++.+.||+|...+... ..+.
T Consensus 92 ~-------~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v--------~~~~ 156 (201)
T 2hup_A 92 R-------TITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLSELREV--------SLAE 156 (201)
T ss_dssp H-------HHHHHHHTTCSEEEEEEETTBHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCS--------CHHH
T ss_pred H-------HHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCcccccccc--------CHHH
Confidence 2 244566789999999999876 2357889999997542111 1111
Q ss_pred HHHHHHHHhhhccccccchhhHHHHHHHHHHHHHHhcC
Q 018241 195 IEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMD 232 (359)
Q Consensus 195 l~~~~~~~~~~~~~~~~Sa~~~~~~~~ll~~i~~~L~~ 232 (359)
+........ ......+||+++.++.++++.+.+.+.+
T Consensus 157 ~~~~~~~~~-~~~~~~~SA~~g~gi~~l~~~l~~~i~~ 193 (201)
T 2hup_A 157 AQSLAEHYD-ILCAIETSAKDSSNVEEAFLRVATELIM 193 (201)
T ss_dssp HHHHHHHTT-CSEEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred HHHHHHHcC-CCEEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 122111111 1011467999999999999988887743
No 109
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=99.51 E-value=3.9e-14 Score=124.43 Aligned_cols=142 Identities=15% Similarity=0.151 Sum_probs=89.3
Q ss_pred CcEEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCCcCCC
Q 018241 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA 135 (359)
Q Consensus 56 ~~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~~~~ 135 (359)
.++|+++|.+|||||||+|+|++..... ...|..+.+.....+.+.+. ...+.+|||||.....
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~---------------~~~~~l~Dt~G~~~~~ 71 (203)
T 1zbd_A 8 MFKILIIGNSSVGKTSFLFRYADDSFTP-AFVSTVGIDFKVKTIYRNDK---------------RIKLQIWDTAGLERYR 71 (203)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTCCCCS-CCCCCCSEEEEEEEEEETTE---------------EEEEEEEEECCSGGGH
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCCCCC-CcCCccceeEEEEEEEECCe---------------EEEEEEEECCCchhhc
Confidence 4799999999999999999999654322 22222222222233333321 2469999999985332
Q ss_pred CcCcchhhhHhhHHHhcccceEEeecCC--------------------CccEEEeCCcccCCcchHHHHhhhhhccHHHH
Q 018241 136 SQGEGLGNKFLSHIREVDSILQVVRCFE--------------------DNDIVHVNGKVDPKSDVDVINLELVFSDLDQI 195 (359)
Q Consensus 136 ~~~~~~~~~~l~~i~~aD~il~Vvd~~~--------------------~~~v~~v~nk~d~~~~~~~i~~el~~~d~~~l 195 (359)
......++++|++++|+|+++ +.+++.+.||+|...+..... +..
T Consensus 72 -------~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~--------~~~ 136 (203)
T 1zbd_A 72 -------TITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSS--------ERG 136 (203)
T ss_dssp -------HHHHTTGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCSSCEEEEEEECTTCTTSCCSCH--------HHH
T ss_pred -------chHHHhhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCcccccCH--------HHH
Confidence 245566789999999999876 246789999999764321100 111
Q ss_pred HHHHHHHhhhccccccchhhHHHHHHHHHHHHHHh
Q 018241 196 EKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQAL 230 (359)
Q Consensus 196 ~~~~~~~~~~~~~~~~Sa~~~~~~~~ll~~i~~~L 230 (359)
........ .....+||+.+.++.++++.+.+.+
T Consensus 137 ~~~~~~~~--~~~~~~Sa~~~~gi~~l~~~l~~~i 169 (203)
T 1zbd_A 137 RQLADHLG--FEFFEASAKDNINVKQTFERLVDVI 169 (203)
T ss_dssp HHHHHHHT--CEEEECBTTTTBSSHHHHHHHHHHH
T ss_pred HHHHHHCC--CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 11111111 1124678999988888887777665
No 110
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=99.51 E-value=9e-14 Score=123.99 Aligned_cols=154 Identities=10% Similarity=0.093 Sum_probs=94.3
Q ss_pred cCCcEEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCCcC
Q 018241 54 SMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVK 133 (359)
Q Consensus 54 ~~~~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~~ 133 (359)
...++|+++|.+|||||||+|+|+++... ..+..|+.+.....+.+.+. ...+.+|||||...
T Consensus 25 ~~~~ki~vvG~~~vGKSsL~~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~---------------~~~l~i~Dt~G~~~ 87 (214)
T 3q3j_B 25 VARCKLVLVGDVQCGKTAMLQVLAKDCYP--ETYVPTVFENYTACLETEEQ---------------RVELSLWDTSGSPY 87 (214)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHSCCC--SSCCCCSEEEEEEEEEC--C---------------EEEEEEEEECCSGG
T ss_pred cceEEEEEECcCCCCHHHHHHHHhcCCCC--CCcCCeeeeeEEEEEEECCE---------------EEEEEEEECCCCHh
Confidence 34589999999999999999999965432 23332332222222333321 25689999999865
Q ss_pred CCCcCcchhhhHhhHHHhcccceEEeecCCC--------------------ccEEEeCCcccCCcchHHHHh---h-hhh
Q 018241 134 GASQGEGLGNKFLSHIREVDSILQVVRCFED--------------------NDIVHVNGKVDPKSDVDVINL---E-LVF 189 (359)
Q Consensus 134 ~~~~~~~~~~~~l~~i~~aD~il~Vvd~~~~--------------------~~v~~v~nk~d~~~~~~~i~~---e-l~~ 189 (359)
... .....++++|++++|+|+++. .+++.+.||+|...+...... . ...
T Consensus 88 ~~~-------~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~ 160 (214)
T 3q3j_B 88 YDN-------VRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRVLLIGCKTDLRTDLSTLMELSHQKQAP 160 (214)
T ss_dssp GTT-------TGGGGCTTCSEEEEEEETTCTHHHHHHHTHHHHHHHHHCTTSEEEEEEECGGGGGCHHHHHHHHHTTCCC
T ss_pred HHH-------HHHHHcCCCeEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccchhhhhhhcccccCc
Confidence 433 233456789999999998762 357889999998755322111 0 001
Q ss_pred ccHHHHHHHHHHHhhhccccccchhhHHH-HHHHHHHHHHHhcC
Q 018241 190 SDLDQIEKRMEKLKKGKAKDSQSKLKEDA-EKAALEKIQQALMD 232 (359)
Q Consensus 190 ~d~~~l~~~~~~~~~~~~~~~~Sa~~~~~-~~~ll~~i~~~L~~ 232 (359)
...+........... .....+||+.+.+ +.++++.+.+.+..
T Consensus 161 v~~~~~~~~~~~~~~-~~~~e~SA~~g~g~v~~lf~~l~~~~~~ 203 (214)
T 3q3j_B 161 ISYEQGCAIAKQLGA-EIYLEGSAFTSEKSIHSIFRTASMLCLN 203 (214)
T ss_dssp CCHHHHHHHHHHHTC-SEEEECCTTTCHHHHHHHHHHHHHHHHC
T ss_pred cCHHHHHHHHHHcCC-CEEEEeccCCCcccHHHHHHHHHHHHhc
Confidence 111222221222211 0114689999998 99999999888754
No 111
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.51 E-value=5.4e-14 Score=119.22 Aligned_cols=143 Identities=16% Similarity=0.138 Sum_probs=89.0
Q ss_pred CcEEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCCcCCC
Q 018241 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA 135 (359)
Q Consensus 56 ~~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~~~~ 135 (359)
.++|+++|.+|||||||+|+|+++... ....| ++.......+..... ...+.+|||||..+..
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~-~~~~~-t~~~~~~~~~~~~~~---------------~~~~~~~Dt~G~~~~~ 65 (172)
T 2erx_A 3 DYRVAVFGAGGVGKSSLVLRFVKGTFR-ESYIP-TVEDTYRQVISCDKS---------------ICTLQITDTTGSHQFP 65 (172)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTCCCC-SSCCC-CSCEEEEEEEEETTE---------------EEEEEEEECCSCSSCH
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCC-CCCCC-CccccEEEEEEECCE---------------EEEEEEEECCCchhhH
Confidence 479999999999999999999964432 11111 111111112222211 2468999999975433
Q ss_pred CcCcchhhhHhhHHHhcccceEEeecCC----------------------CccEEEeCCcccCCcchHHHHhhhhhccHH
Q 018241 136 SQGEGLGNKFLSHIREVDSILQVVRCFE----------------------DNDIVHVNGKVDPKSDVDVINLELVFSDLD 193 (359)
Q Consensus 136 ~~~~~~~~~~l~~i~~aD~il~Vvd~~~----------------------~~~v~~v~nk~d~~~~~~~i~~el~~~d~~ 193 (359)
. .....++.+|++++|+|+++ +.+++.+.||+|...+.+....
T Consensus 66 ~-------~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~~~~v~~~-------- 130 (172)
T 2erx_A 66 A-------MQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSS-------- 130 (172)
T ss_dssp H-------HHHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHH--------
T ss_pred H-------HHHHhcccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEccccccccccCHH--------
Confidence 2 44556788999999999876 1357889999996543211000
Q ss_pred HHHHHHHHHhhhccccccchhhHHHHHHHHHHHHHHhcC
Q 018241 194 QIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMD 232 (359)
Q Consensus 194 ~l~~~~~~~~~~~~~~~~Sa~~~~~~~~ll~~i~~~L~~ 232 (359)
..+....... .....+||+.+.++.++++.+.+.+..
T Consensus 131 ~~~~~~~~~~--~~~~~~Sa~~~~gi~~l~~~l~~~~~~ 167 (172)
T 2erx_A 131 EAEALARTWK--CAFMETSAKLNHNVKELFQELLNLEKR 167 (172)
T ss_dssp HHHHHHHHHT--CEEEECBTTTTBSHHHHHHHHHHTCCS
T ss_pred HHHHHHHHhC--CeEEEecCCCCcCHHHHHHHHHHHHhh
Confidence 1111111111 111468999999999999999887753
No 112
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.51 E-value=3.3e-14 Score=123.77 Aligned_cols=141 Identities=18% Similarity=0.172 Sum_probs=90.6
Q ss_pred CCcEEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCCcCC
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~~~ 134 (359)
..++|+++|.+|||||||+|+|+++... .... .|.......+... ...+.+|||||..+.
T Consensus 21 ~~~ki~v~G~~~~GKSsli~~l~~~~~~-~~~~--~t~~~~~~~~~~~-----------------~~~~~l~Dt~G~~~~ 80 (188)
T 1zd9_A 21 EEMELTLVGLQYSGKTTFVNVIASGQFN-EDMI--PTVGFNMRKITKG-----------------NVTIKLWDIGGQPRF 80 (188)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCC-CSCC--CCCSEEEEEEEET-----------------TEEEEEEEECCSHHH
T ss_pred CccEEEEECCCCCCHHHHHHHHHcCCCC-CccC--CCCceeEEEEEeC-----------------CEEEEEEECCCCHhH
Confidence 3589999999999999999999965443 1111 2322333333332 467999999997533
Q ss_pred CCcCcchhhhHhhHHHhcccceEEeecCCC---------------------ccEEEeCCcccCCcch--HHHHhhhhhcc
Q 018241 135 ASQGEGLGNKFLSHIREVDSILQVVRCFED---------------------NDIVHVNGKVDPKSDV--DVINLELVFSD 191 (359)
Q Consensus 135 ~~~~~~~~~~~l~~i~~aD~il~Vvd~~~~---------------------~~v~~v~nk~d~~~~~--~~i~~el~~~d 191 (359)
.. .....++++|++++|+|+++. .+++.+.||+|...+. ..+..++...
T Consensus 81 ~~-------~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~- 152 (188)
T 1zd9_A 81 RS-------MWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGALDEKELIEKMNLS- 152 (188)
T ss_dssp HT-------THHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTGG-
T ss_pred HH-------HHHHHHccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCCEEEEEECCCCccCCCHHHHHHHhChh-
Confidence 22 344567899999999998652 3578899999976432 1111111000
Q ss_pred HHHHHHHHHHHhh-hccccccchhhHHHHHHHHHHHHHHhcC
Q 018241 192 LDQIEKRMEKLKK-GKAKDSQSKLKEDAEKAALEKIQQALMD 232 (359)
Q Consensus 192 ~~~l~~~~~~~~~-~~~~~~~Sa~~~~~~~~ll~~i~~~L~~ 232 (359)
.... ......+||+.+.++.++++.+.+.+..
T Consensus 153 ---------~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~~~~ 185 (188)
T 1zd9_A 153 ---------AIQDREICCYSISCKEKDNIDITLQWLIQHSKS 185 (188)
T ss_dssp ---------GCCSSCEEEEECCTTTCTTHHHHHHHHHHTCC-
T ss_pred ---------hhccCCeeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 0000 0111467999999999999999887743
No 113
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.50 E-value=1.6e-13 Score=115.25 Aligned_cols=140 Identities=17% Similarity=0.126 Sum_probs=90.9
Q ss_pred cEEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCCcCCCC
Q 018241 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGAS 136 (359)
Q Consensus 57 ~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~~~~~ 136 (359)
++|+++|.+|||||||+|+|++.... ..++.++.+.....+...+. ...+.+|||||..+...
T Consensus 4 ~~i~v~G~~~~GKssl~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~D~~G~~~~~~ 66 (166)
T 2ce2_X 4 YKLVVVGAGGVGKSALTIQLIQNHFV--DECDPTIEDSYRKQVVIDGE---------------TCLLDILDTAGQEEYSA 66 (166)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSSCC--SCCCTTCCEEEEEEEEETTE---------------EEEEEEEECCCCSSCCH
T ss_pred eEEEEECCCCCCHHHHHHHHHhCcCc--cccCCccceEEEEEEEECCE---------------EEEEEEEECCCchhhhH
Confidence 68999999999999999999965432 23333443333333433321 24589999999764432
Q ss_pred cCcchhhhHhhHHHhcccceEEeecCC---------------------CccEEEeCCcccCCcchHHHHhhhhhccHHHH
Q 018241 137 QGEGLGNKFLSHIREVDSILQVVRCFE---------------------DNDIVHVNGKVDPKSDVDVINLELVFSDLDQI 195 (359)
Q Consensus 137 ~~~~~~~~~l~~i~~aD~il~Vvd~~~---------------------~~~v~~v~nk~d~~~~~~~i~~el~~~d~~~l 195 (359)
.....++.+|++++|+|+++ +.+++.+.||+|..... ... +..
T Consensus 67 -------~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~Dl~~~~-~~~--------~~~ 130 (166)
T 2ce2_X 67 -------MRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAART-VES--------RQA 130 (166)
T ss_dssp -------HHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCCC-SCH--------HHH
T ss_pred -------HHHHhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEchhhhhcc-cCH--------HHH
Confidence 33456788999999999875 24678999999966411 100 111
Q ss_pred HHHHHHHhhhccccccchhhHHHHHHHHHHHHHHhc
Q 018241 196 EKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALM 231 (359)
Q Consensus 196 ~~~~~~~~~~~~~~~~Sa~~~~~~~~ll~~i~~~L~ 231 (359)
........ .....+||+.+.++.++++.+.+.+.
T Consensus 131 ~~~~~~~~--~~~~~~Sa~~~~gi~~l~~~l~~~~~ 164 (166)
T 2ce2_X 131 QDLARSYG--IPYIETSAKTRQGVEDAFYTLVREIR 164 (166)
T ss_dssp HHHHHHHT--CCEEEECTTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHHcC--CeEEEecCCCCCCHHHHHHHHHHHHH
Confidence 11111111 11246789999999999999888764
No 114
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.50 E-value=1.4e-13 Score=127.80 Aligned_cols=156 Identities=19% Similarity=0.222 Sum_probs=78.8
Q ss_pred CCcEEEEEecCCCChhHHHHHHHhccccccCCCC------ceeccceeEEEEeCCCccchhccccccccccCceEEEEec
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFP------FCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDI 128 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p------~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDt 128 (359)
..++|+++|.+|+|||||+|+|++...... .+| ..|.........+... .....+.+|||
T Consensus 7 ~~~~I~vvG~~g~GKSTLin~L~~~~~~~~-~~~~~~~~~~~t~~~~~~~~~~~~~-------------~~~~~l~liDT 72 (274)
T 3t5d_A 7 FEFTLMVVGESGLGKSTLINSLFLTDLYSP-EYPGPSHRIKKTVQVEQSKVLIKEG-------------GVQLLLTIVDT 72 (274)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHSSSCC----------------CCCEEEEEEECC---------------CCEEEEEEEC
T ss_pred cEEEEEEECCCCCCHHHHHHHHhCCCcccc-CCCCcccccCCceEEEEEEEEEecC-------------CeEEEEEEEEC
Confidence 348999999999999999999996554433 332 3333333333333210 00237999999
Q ss_pred CCCcCCCCcCcch-------hhhHhhHHHh-------------cccceEEeecCC----------------CccEEEeCC
Q 018241 129 AGLVKGASQGEGL-------GNKFLSHIRE-------------VDSILQVVRCFE----------------DNDIVHVNG 172 (359)
Q Consensus 129 pG~~~~~~~~~~~-------~~~~l~~i~~-------------aD~il~Vvd~~~----------------~~~v~~v~n 172 (359)
||+.+.......+ ..+|...++. +|+++++++.+. ..+++.+.|
T Consensus 73 pG~~d~~~~~~~~~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~l~~l~~~~pvi~V~n 152 (274)
T 3t5d_A 73 PGFGDAVDNSNCWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHEKVNIIPLIA 152 (274)
T ss_dssp CCCSCCSCCTTTTHHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHHHHHHTTTSCEEEEES
T ss_pred CCccccccchhhHHHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHHHHHHHhccCCEEEEEe
Confidence 9996543322111 1223344444 778899987654 246899999
Q ss_pred cccCCcchHHHHhhhhhccHHHHHHHHHHHhhhccccccchhhHHHHHHHHHHHHHHhcC
Q 018241 173 KVDPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMD 232 (359)
Q Consensus 173 k~d~~~~~~~i~~el~~~d~~~l~~~~~~~~~~~~~~~~Sa~~~~~~~~ll~~i~~~L~~ 232 (359)
|+|.+...+. .. ....+.+.+... ......+|++++.++.++.+.+.+.++-
T Consensus 153 K~D~~~~~e~-~~-----~~~~i~~~l~~~--~i~v~~~sa~~~~~~~~l~~~l~~~~p~ 204 (274)
T 3t5d_A 153 KADTLTPEEC-QQ-----FKKQIMKEIQEH--KIKIYEFPETDDEEENKLVKKIKDRLPL 204 (274)
T ss_dssp SGGGSCHHHH-HH-----HHHHHHHHHHHT--TCCCCCC-----------CHHHHHTCSE
T ss_pred ccCCCCHHHH-HH-----HHHHHHHHHHHc--CCeEEcCCCCCChhHHHHHHHHhcCCCc
Confidence 9997643221 11 001111111111 1111457888899998998888887753
No 115
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=99.50 E-value=3.1e-14 Score=122.34 Aligned_cols=151 Identities=17% Similarity=0.078 Sum_probs=85.2
Q ss_pred CCcEEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCCcCC
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~~~ 134 (359)
..++|+++|.+|||||||+|+++++.. ...++.|+.+.....+.+.+ ....+.+|||||..+.
T Consensus 7 ~~~ki~v~G~~~~GKssl~~~~~~~~~--~~~~~~t~~~~~~~~~~~~~---------------~~~~~~i~Dt~G~~~~ 69 (182)
T 3bwd_D 7 RFIKCVTVGDGAVGKTCLLISYTSNTF--PTDYVPTVFDNFSANVVVNG---------------ATVNLGLWDTAGQEDY 69 (182)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHSCC--C----------CBCCCC----------------------CEEECCCC-CTT
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCC--CCCCCCeeeeeEEEEEEECC---------------EEEEEEEEECCCChhh
Confidence 458999999999999999999995542 22333333222111111111 1345789999998654
Q ss_pred CCcCcchhhhHhhHHHhcccceEEeecCC--------------------CccEEEeCCcccCCcchHHHHhhhh--hccH
Q 018241 135 ASQGEGLGNKFLSHIREVDSILQVVRCFE--------------------DNDIVHVNGKVDPKSDVDVINLELV--FSDL 192 (359)
Q Consensus 135 ~~~~~~~~~~~l~~i~~aD~il~Vvd~~~--------------------~~~v~~v~nk~d~~~~~~~i~~el~--~~d~ 192 (359)
.. .....++++|++++|+|+++ +.+++.+.||+|...+......... ....
T Consensus 70 ~~-------~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~v~~ 142 (182)
T 3bwd_D 70 NR-------LRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKLDLRDDKQFFIDHPGAVPITT 142 (182)
T ss_dssp TT-------TGGGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHTCHHHHHHC--CCCCCH
T ss_pred hh-------hHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhhcCcccccccccCCCCCH
Confidence 43 33455688999999999875 2367889999997654332110000 0011
Q ss_pred HHHHHHHHHHhhhccccccchhhHHHHHHHHHHHHHHh
Q 018241 193 DQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQAL 230 (359)
Q Consensus 193 ~~l~~~~~~~~~~~~~~~~Sa~~~~~~~~ll~~i~~~L 230 (359)
+.......... ......+||+++.++.++++.+.+.+
T Consensus 143 ~~~~~~~~~~~-~~~~~~~Sa~~~~gi~~l~~~l~~~i 179 (182)
T 3bwd_D 143 VQGEELKKLIG-APAYIECSSKSQENVKGVFDAAIRVV 179 (182)
T ss_dssp HHHHHHHHHHT-CSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHcC-CCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 11122111111 11125689999999999999888776
No 116
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.50 E-value=4.3e-14 Score=141.89 Aligned_cols=141 Identities=16% Similarity=0.174 Sum_probs=97.9
Q ss_pred CcEEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCCcCCC
Q 018241 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA 135 (359)
Q Consensus 56 ~~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~~~~ 135 (359)
.++|+|+|.||||||||+|+|+++... .. ..|++.+.+.+.+. +..+.+|||||.....
T Consensus 322 ~~ki~lvG~~nvGKSsLl~~l~~~~~~--~~--~~T~~~~~~~~~~~-----------------~~~~~l~Dt~G~~~~~ 380 (497)
T 3lvq_E 322 EMRILMLGLDAAGKTTILYKLKLGQSV--TT--IPTVGFNVETVTYK-----------------NVKFNVWDVGGQDKIR 380 (497)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSSCC--CC--CCCSSEEEEEEESS-----------------SCEEEEEEECCCGGGS
T ss_pred ceeEEEEcCCCCCHHHHHHHHhcCCCC--Cc--CCccceeEEEEEeC-----------------CEEEEEEECCCcHHHH
Confidence 479999999999999999999966633 23 34777777777665 3679999999975544
Q ss_pred CcCcchhhhHhhHHHhcccceEEeecCCC---------------------ccEEEeCCcccCCcch--HHHHhhhhhccH
Q 018241 136 SQGEGLGNKFLSHIREVDSILQVVRCFED---------------------NDIVHVNGKVDPKSDV--DVINLELVFSDL 192 (359)
Q Consensus 136 ~~~~~~~~~~l~~i~~aD~il~Vvd~~~~---------------------~~v~~v~nk~d~~~~~--~~i~~el~~~d~ 192 (359)
. .+...++.+|++++|+|+++. .+++.+.||+|..... ..+..++.....
T Consensus 381 ~-------~~~~~~~~ad~~i~V~D~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~ 453 (497)
T 3lvq_E 381 P-------LWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRI 453 (497)
T ss_dssp G-------GGGGGGTTCCEEEEEEETTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECCSSSSCCCHHHHHHHTTCTTC
T ss_pred H-------HHHHHhccCCEEEEEEECcchhHHHHHHHHHHHHhhhhhcCCCcEEEEEECCCCCcCCCHHHHHHHhchhhh
Confidence 3 456677899999999998763 3578999999975432 111111110000
Q ss_pred HHHHHHHHHHhhhccccccchhhHHHHHHHHHHHHHHhcCC
Q 018241 193 DQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMDG 233 (359)
Q Consensus 193 ~~l~~~~~~~~~~~~~~~~Sa~~~~~~~~ll~~i~~~L~~~ 233 (359)
. ........+||+++.++.++++.|.+.+...
T Consensus 454 ~---------~~~~~~~~~SA~~g~gi~~l~~~l~~~~~~~ 485 (497)
T 3lvq_E 454 R---------DRNWYVQPSCATSGDGLYEGLTWLTSNYKSK 485 (497)
T ss_dssp C---------SSCEEEEECBTTTTBTHHHHHHHHHHHCC--
T ss_pred h---------cCCeEEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 0 0000114689999999999999999998653
No 117
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.50 E-value=9.1e-14 Score=122.91 Aligned_cols=151 Identities=17% Similarity=0.114 Sum_probs=91.2
Q ss_pred CcEEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCCcCCC
Q 018241 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA 135 (359)
Q Consensus 56 ~~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~~~~ 135 (359)
.++|+++|.+|||||||+|+|++..... .+..++.+.....+.+.+. ...+.+|||||..+..
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~---------------~~~~~i~Dt~G~~~~~ 87 (207)
T 2fv8_A 25 RKKLVVVGDGACGKTCLLIVFSKDEFPE--VYVPTVFENYVADIEVDGK---------------QVELALWDTAGQEDYD 87 (207)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSSCC---------CCEEEEEEEETTE---------------EEEEEEEECTTCTTCT
T ss_pred CcEEEEECcCCCCHHHHHHHHhcCCCCC--cCCCcccceEEEEEEECCE---------------EEEEEEEECCCcHHHH
Confidence 3699999999999999999999655432 2223333333233333321 2468999999986544
Q ss_pred CcCcchhhhHhhHHHhcccceEEeecCC--------------------CccEEEeCCcccCCcchHHHHh--hhhh--cc
Q 018241 136 SQGEGLGNKFLSHIREVDSILQVVRCFE--------------------DNDIVHVNGKVDPKSDVDVINL--ELVF--SD 191 (359)
Q Consensus 136 ~~~~~~~~~~l~~i~~aD~il~Vvd~~~--------------------~~~v~~v~nk~d~~~~~~~i~~--el~~--~d 191 (359)
. .....++++|++++|+|+++ +.+++.+.||+|...+...... ++.. ..
T Consensus 88 ~-------~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~ 160 (207)
T 2fv8_A 88 R-------LRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKDLRSDEHVRTELARMKQEPVR 160 (207)
T ss_dssp T-------TGGGGCTTCCEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGGGCHHHHHHHHHTTCCCCC
T ss_pred H-------HHHhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhhhccccchhhhhhcccCCCC
Confidence 3 23345678999999999876 2357899999998754322111 0100 11
Q ss_pred HHHHHHHHHHHhhhccccccchhhHHHHHHHHHHHHHHhc
Q 018241 192 LDQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALM 231 (359)
Q Consensus 192 ~~~l~~~~~~~~~~~~~~~~Sa~~~~~~~~ll~~i~~~L~ 231 (359)
.+.......... ......+||+++.++.++++.+.+.+.
T Consensus 161 ~~~~~~~~~~~~-~~~~~~~SA~~g~gi~el~~~l~~~i~ 199 (207)
T 2fv8_A 161 TDDGRAMAVRIQ-AYDYLECSAKTKEGVREVFETATRAAL 199 (207)
T ss_dssp HHHHHHHHHHTT-CSEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCEEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 111111111111 101146799999999999999988764
No 118
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.50 E-value=5.4e-14 Score=121.83 Aligned_cols=140 Identities=18% Similarity=0.185 Sum_probs=89.9
Q ss_pred CCcEEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCCcCC
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~~~ 134 (359)
..++|+++|.+|||||||+|+|++.......+ |.......+.++ +..+.+|||||....
T Consensus 15 ~~~ki~ivG~~~vGKSsL~~~l~~~~~~~~~~----t~g~~~~~~~~~-----------------~~~l~i~Dt~G~~~~ 73 (181)
T 1fzq_A 15 QEVRILLLGLDNAGKTTLLKQLASEDISHITP----TQGFNIKSVQSQ-----------------GFKLNVWDIGGQRKI 73 (181)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCCSCCEEEEE----ETTEEEEEEEET-----------------TEEEEEEECSSCGGG
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCCCcccC----cCCeEEEEEEEC-----------------CEEEEEEECCCCHHH
Confidence 45899999999999999999999654322222 211122233333 357999999997532
Q ss_pred CCcCcchhhhHhhHHHhcccceEEeecCCC---------------------ccEEEeCCcccCCcch--HHHHhhhhhcc
Q 018241 135 ASQGEGLGNKFLSHIREVDSILQVVRCFED---------------------NDIVHVNGKVDPKSDV--DVINLELVFSD 191 (359)
Q Consensus 135 ~~~~~~~~~~~l~~i~~aD~il~Vvd~~~~---------------------~~v~~v~nk~d~~~~~--~~i~~el~~~d 191 (359)
. ..+...++++|++++|+|+++. .+++.+.||+|..... +.+.+++.+.
T Consensus 74 ~-------~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~- 145 (181)
T 1fzq_A 74 R-------PYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAPASEIAEGLNLH- 145 (181)
T ss_dssp H-------HHHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTGG-
T ss_pred H-------HHHHHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcCcccCCCHHHHHHHhCch-
Confidence 2 2445677899999999998762 3578899999976432 1111111100
Q ss_pred HHHHHHHHHHHhh-hccccccchhhHHHHHHHHHHHHHHhcC
Q 018241 192 LDQIEKRMEKLKK-GKAKDSQSKLKEDAEKAALEKIQQALMD 232 (359)
Q Consensus 192 ~~~l~~~~~~~~~-~~~~~~~Sa~~~~~~~~ll~~i~~~L~~ 232 (359)
.... ......+||+++.++.++++.+.+.+.+
T Consensus 146 ---------~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~ 178 (181)
T 1fzq_A 146 ---------TIRDRVWQIQSCSALTGEGVQDGMNWVCKNVNA 178 (181)
T ss_dssp ---------GCCSSCEEEEECCTTTCTTHHHHHHHHHHTC--
T ss_pred ---------hccCCceEEEEccCCCCCCHHHHHHHHHHHHHh
Confidence 0000 0111467999999999999999887743
No 119
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=99.49 E-value=3.7e-13 Score=116.50 Aligned_cols=150 Identities=16% Similarity=0.162 Sum_probs=91.1
Q ss_pred CCcEEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCCcCC
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~~~ 134 (359)
..++|+++|.+|||||||+|+|+++... ..+..++.......+.+.+. ...+.+|||||....
T Consensus 6 ~~~ki~v~G~~~vGKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~---------------~~~~~i~Dt~G~~~~ 68 (184)
T 1m7b_A 6 VKCKIVVVGDSQCGKTALLHVFAKDCFP--ENYVPTVFENYTASFEIDTQ---------------RIELSLWDTSGSPYY 68 (184)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCCC--SSCCCCSEEEEEEEEECSSC---------------EEEEEEEEECCSGGG
T ss_pred eEEEEEEECCCCCCHHHHHHHHhcCCCC--CCCCCccceeEEEEEEECCE---------------EEEEEEEECCCChhh
Confidence 4479999999999999999999965432 12222222222222333321 256899999998544
Q ss_pred CCcCcchhhhHhhHHHhcccceEEeecCC--------------------CccEEEeCCcccCCcchHHHHhhh-----hh
Q 018241 135 ASQGEGLGNKFLSHIREVDSILQVVRCFE--------------------DNDIVHVNGKVDPKSDVDVINLEL-----VF 189 (359)
Q Consensus 135 ~~~~~~~~~~~l~~i~~aD~il~Vvd~~~--------------------~~~v~~v~nk~d~~~~~~~i~~el-----~~ 189 (359)
.. .....++.+|++++|+|+++ +.+++.+.||+|...+...+. ++ ..
T Consensus 69 ~~-------~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~-~~~~~~~~~ 140 (184)
T 1m7b_A 69 DN-------VRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLV-ELSNHRQTP 140 (184)
T ss_dssp TT-------TGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHHHHH-HHHTTTCCC
T ss_pred hh-------hHHhhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEcchhhcchhhHh-hhhhcccCC
Confidence 32 22335678999999999875 236788999999775432211 11 01
Q ss_pred ccHHHHHHHHHHHhhhccccccchh-hHHHHHHHHHHHHHHh
Q 018241 190 SDLDQIEKRMEKLKKGKAKDSQSKL-KEDAEKAALEKIQQAL 230 (359)
Q Consensus 190 ~d~~~l~~~~~~~~~~~~~~~~Sa~-~~~~~~~ll~~i~~~L 230 (359)
...+........+. ......+||+ .+.++.++++.+.+.+
T Consensus 141 v~~~~~~~~~~~~~-~~~~~e~Sa~~~~~gi~~l~~~i~~~~ 181 (184)
T 1m7b_A 141 VSYDQGANMAKQIG-AATYIECSALQSENSVRDIFHVATLAC 181 (184)
T ss_dssp CCHHHHHHHHHHHT-CSEEEECBTTTBHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHcC-CcEEEEeeecCCCcCHHHHHHHHHHHH
Confidence 11122222221111 1111468998 6899999998887765
No 120
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=99.49 E-value=3.5e-15 Score=131.19 Aligned_cols=144 Identities=13% Similarity=0.140 Sum_probs=89.8
Q ss_pred CCcEEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCCcCC
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~~~ 134 (359)
..++|+++|.+|||||||+|+|++. .......|.+|.+.....+.+.+. ...+.+|||||....
T Consensus 32 ~~~ki~vvG~~~~GKSsli~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~i~Dt~G~~~~ 95 (199)
T 3l0i_B 32 YLFKLLLIGDSGVGKSCLLLRFADD-TYTESYISTIGVDFKIRTIELDGK---------------TIKLQIWDTAGQERF 95 (199)
T ss_dssp EEEEEEEECCTTSCCTTTTTSSBCC-CCCCHHHHHHCCSEEEEEEEETTE---------------EEEEEEECCTTCTTC
T ss_pred cceEEEEECCCCCCHHHHHHHHhcC-CCCCCcCCcccceEEEEEEEECCE---------------EEEEEEEECCCcHhH
Confidence 3489999999999999999999943 333334455666666666666532 146999999997654
Q ss_pred CCcCcchhhhHhhHHHhcccceEEeecCCC--------------------ccEEEeCCcccCCcchHHHHhhhhhccHHH
Q 018241 135 ASQGEGLGNKFLSHIREVDSILQVVRCFED--------------------NDIVHVNGKVDPKSDVDVINLELVFSDLDQ 194 (359)
Q Consensus 135 ~~~~~~~~~~~l~~i~~aD~il~Vvd~~~~--------------------~~v~~v~nk~d~~~~~~~i~~el~~~d~~~ 194 (359)
.. .....++.+|++++|+|+++. .+++.+.||+|...+... .......
T Consensus 96 ~~-------~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~v-----~~~~~~~ 163 (199)
T 3l0i_B 96 RT-------ITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVV-----DYTTAKE 163 (199)
T ss_dssp CC-------CSCC--CCCSEEEECC-CCCSHHHHHHHHHHHHHHSCC-CCSEEEEC-CCSSCC--CCC-----CSCC-CH
T ss_pred HH-------HHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccCCCCEEEEEECccCCccccC-----CHHHHHH
Confidence 43 234456889999999998762 357889999997533211 1111111
Q ss_pred HHHHHHHHhhhccccccchhhHHHHHHHHHHHHHHhc
Q 018241 195 IEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALM 231 (359)
Q Consensus 195 l~~~~~~~~~~~~~~~~Sa~~~~~~~~ll~~i~~~L~ 231 (359)
+.+ ... .....+||+.+.++.++++.+.+.+.
T Consensus 164 ~~~---~~~--~~~~~vSA~~g~gv~~l~~~l~~~l~ 195 (199)
T 3l0i_B 164 FAD---SLG--IPFLETSAKNATNVEQSFMTMAAEIK 195 (199)
T ss_dssp HHH---TTT--CCBCCCCC---HHHHHHHHHHTTTTT
T ss_pred HHH---HcC--CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 111 111 11257899999999999998877664
No 121
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=99.49 E-value=5.4e-14 Score=125.96 Aligned_cols=145 Identities=14% Similarity=0.117 Sum_probs=90.9
Q ss_pred CCcEEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCCcCC
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~~~ 134 (359)
..++|+|+|.+|||||||+|+|++..... ...|..+.+.....+.+++. ...+.+|||||....
T Consensus 12 ~~~ki~v~G~~~vGKSsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~---------------~~~~~i~Dt~G~~~~ 75 (223)
T 3cpj_B 12 LLFKIVLIGDSGVGKSNLLSRFTKNEFNM-DSKSTIGVEFATRTLEIEGK---------------RIKAQIWDTAGQERY 75 (223)
T ss_dssp EEEEEEEESCTTSSHHHHHHHHHHCCCCC-------CCSEEEEEEEETTE---------------EEEEEEECCTTTTTT
T ss_pred eeeEEEEECcCCCCHHHHHHHHhcCCCCC-CCCCcccceeEEEEEEECCE---------------EEEEEEEECCCccch
Confidence 34799999999999999999999654432 33344444444455555431 246899999997654
Q ss_pred CCcCcchhhhHhhHHHhcccceEEeecCC--------------------CccEEEeCCcccCCcchHHHHhhhhhccHHH
Q 018241 135 ASQGEGLGNKFLSHIREVDSILQVVRCFE--------------------DNDIVHVNGKVDPKSDVDVINLELVFSDLDQ 194 (359)
Q Consensus 135 ~~~~~~~~~~~l~~i~~aD~il~Vvd~~~--------------------~~~v~~v~nk~d~~~~~~~i~~el~~~d~~~ 194 (359)
.. .....++.+|++++|+|+++ +.+++.+.||+|...+..... +.
T Consensus 76 ~~-------~~~~~~~~~d~vilV~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~--------~~ 140 (223)
T 3cpj_B 76 RA-------ITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKSDLAHLRAVPT--------EE 140 (223)
T ss_dssp TC-------CCGGGTTTCCEEEEEEC-CCHHHHHHHHHHHHHHHHHCC--CEEEEEECCGGGGGGCCSCH--------HH
T ss_pred hh-------hHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccccCH--------HH
Confidence 33 23445678999999999876 235788999999754211100 11
Q ss_pred HHHHHHHHhhhccccccchhhHHHHHHHHHHHHHHhcC
Q 018241 195 IEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMD 232 (359)
Q Consensus 195 l~~~~~~~~~~~~~~~~Sa~~~~~~~~ll~~i~~~L~~ 232 (359)
......... .....+||+.+.++.++++.+.+.+.+
T Consensus 141 ~~~~~~~~~--~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 176 (223)
T 3cpj_B 141 SKTFAQENQ--LLFTETSALNSENVDKAFEELINTIYQ 176 (223)
T ss_dssp HHHHHHHTT--CEEEECCCC-CCCHHHHHHHHHHHHTT
T ss_pred HHHHHHHcC--CEEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 111111111 111467999999999999999988854
No 122
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=99.48 E-value=2.4e-13 Score=119.66 Aligned_cols=149 Identities=17% Similarity=0.107 Sum_probs=92.0
Q ss_pred CcEEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCCcCCC
Q 018241 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA 135 (359)
Q Consensus 56 ~~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~~~~ 135 (359)
.++|+++|.+|||||||+|+|++.... ....|.++ ......+.+++. ...+.+|||||..+..
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~~~~~~-~~~~~t~~-~~~~~~~~~~~~---------------~~~l~i~Dt~G~~~~~ 87 (201)
T 2gco_A 25 RKKLVIVGDGACGKTCLLIVFSKDQFP-EVYVPTVF-ENYIADIEVDGK---------------QVELALWDTAGQEDYD 87 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSCC-SSCCCSSC-CCCEEEEEETTE---------------EEEEEEECCCCSGGGT
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCcCC-cccCCccc-ceEEEEEEECCE---------------EEEEEEEECCCchhHH
Confidence 479999999999999999999965443 22223222 222233444321 2468999999975433
Q ss_pred CcCcchhhhHhhHHHhcccceEEeecCC--------------------CccEEEeCCcccCCcchHHHHhhhh-----hc
Q 018241 136 SQGEGLGNKFLSHIREVDSILQVVRCFE--------------------DNDIVHVNGKVDPKSDVDVINLELV-----FS 190 (359)
Q Consensus 136 ~~~~~~~~~~l~~i~~aD~il~Vvd~~~--------------------~~~v~~v~nk~d~~~~~~~i~~el~-----~~ 190 (359)
. .....++.+|++++|+|+.+ +.+++.+.||+|...+..... ++. ..
T Consensus 88 ~-------~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~-~~~~~~~~~v 159 (201)
T 2gco_A 88 R-------LRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRQDEHTRR-ELAKMKQEPV 159 (201)
T ss_dssp T-------TGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGTTCHHHHH-HHHTTTCCCC
T ss_pred H-------HHHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEecHHhhcCccchh-hhcccccCcC
Confidence 2 22345688999999999876 246789999999876533211 111 01
Q ss_pred cHHHHHHHHHHHhhhccccccchhhHHHHHHHHHHHHHHh
Q 018241 191 DLDQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQAL 230 (359)
Q Consensus 191 d~~~l~~~~~~~~~~~~~~~~Sa~~~~~~~~ll~~i~~~L 230 (359)
..+........... .....+||+.+.++.++++.+.+.+
T Consensus 160 ~~~~~~~~~~~~~~-~~~~~~SA~~g~gi~~l~~~i~~~~ 198 (201)
T 2gco_A 160 RSEEGRDMANRISA-FGYLECSAKTKEGVREVFEMATRAG 198 (201)
T ss_dssp CHHHHHHHHHHTTC-SEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCC-cEEEEeeCCCCCCHHHHHHHHHHHH
Confidence 11111221111111 0114679999999999998887765
No 123
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=99.48 E-value=1.1e-13 Score=123.19 Aligned_cols=153 Identities=15% Similarity=0.117 Sum_probs=84.6
Q ss_pred CCcEEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCCcCC
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~~~ 134 (359)
..++|+++|.+|||||||+|+|+++... ..+..++.+.....+.+.+. ...+.+|||||....
T Consensus 33 ~~~ki~vvG~~~vGKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~---------------~~~l~l~Dt~G~~~~ 95 (214)
T 2j1l_A 33 RSVKVVLVGDGGCGKTSLLMVFADGAFP--ESYTPTVFERYMVNLQVKGK---------------PVHLHIWDTAGQDDY 95 (214)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHC---------CCCCCEEEEEEEEETTE---------------EEEEEEEEC------
T ss_pred ceEEEEEECcCCCCHHHHHHHHHcCCCC--CCCCCccceeEEEEEEECCE---------------EEEEEEEECCCchhh
Confidence 3589999999999999999999955432 23333443333333444321 246899999997644
Q ss_pred CCcCcchhhhHhhHHHhcccceEEeecCC--------------------CccEEEeCCcccCCcchHHHHh--hhh--hc
Q 018241 135 ASQGEGLGNKFLSHIREVDSILQVVRCFE--------------------DNDIVHVNGKVDPKSDVDVINL--ELV--FS 190 (359)
Q Consensus 135 ~~~~~~~~~~~l~~i~~aD~il~Vvd~~~--------------------~~~v~~v~nk~d~~~~~~~i~~--el~--~~ 190 (359)
.. .....++++|++++|+|+++ +.+++.+.||+|...+...... ++. ..
T Consensus 96 ~~-------~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v 168 (214)
T 2j1l_A 96 DR-------LRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFCKKVPIIVVGCKTDLRKDKSLVNKLRRNGLEPV 168 (214)
T ss_dssp ----------------CEEEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECGGGGSCHHHHHHHHHTTCCCC
T ss_pred hH-------HHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhhccchhhhhhcccccCcc
Confidence 33 22345678999999999876 2367889999998765432111 000 11
Q ss_pred cHHHHHHHHHHHhhhccccccchhhHHHHHHHHHHHHHHhcC
Q 018241 191 DLDQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMD 232 (359)
Q Consensus 191 d~~~l~~~~~~~~~~~~~~~~Sa~~~~~~~~ll~~i~~~L~~ 232 (359)
..+.......... ......+||+.+.++.++++.+.+.+.+
T Consensus 169 ~~~~~~~~~~~~~-~~~~~~~SA~~g~gi~el~~~l~~~~~~ 209 (214)
T 2j1l_A 169 TYHRGQEMARSVG-AVAYLECSARLHDNVHAVFQEAAEVALS 209 (214)
T ss_dssp CHHHHHHHHHHTT-CSEEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHhcC-CCEEEEecCCCCCCHHHHHHHHHHHHHH
Confidence 1111122111111 1112568999999999999988877743
No 124
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=99.48 E-value=1.2e-13 Score=121.16 Aligned_cols=145 Identities=19% Similarity=0.131 Sum_probs=90.8
Q ss_pred CcEEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCCcCCC
Q 018241 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA 135 (359)
Q Consensus 56 ~~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~~~~ 135 (359)
.++|+++|.||||||||+|++++.....++.++.++.+.....+.+++. ..++.+|||+|.....
T Consensus 6 ~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~l~~~Dt~~~~~~~ 70 (192)
T 2cjw_A 6 YYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGE---------------SATIILLDMWENKGEN 70 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHSCCC----GGGCTTEEEEEEEETTE---------------EEEEEEECCCCC----
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCcCCcCccccccceeEEEEEEEECCe---------------EEEEEEEEeccCcchh
Confidence 4799999999999999999999765555556666665555555555432 2457899999975321
Q ss_pred CcCcchhhhHhhHHHhcccceEEeecCC---------------------CccEEEeCCcccCCcchHHHHhhhhhccHHH
Q 018241 136 SQGEGLGNKFLSHIREVDSILQVVRCFE---------------------DNDIVHVNGKVDPKSDVDVINLELVFSDLDQ 194 (359)
Q Consensus 136 ~~~~~~~~~~l~~i~~aD~il~Vvd~~~---------------------~~~v~~v~nk~d~~~~~~~i~~el~~~d~~~ 194 (359)
..+. ....+.+|++++|+|.++ +.+++.+.||+|...+... ..+.
T Consensus 71 ---~~~~---~~~~~~~~~~i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~r~v--------~~~~ 136 (192)
T 2cjw_A 71 ---EWLH---DHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRXREV--------SVSE 136 (192)
T ss_dssp ---CTTG---GGHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECTTCGGGCCS--------CHHH
T ss_pred ---hhHH---HhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEechhhhccccc--------cHHH
Confidence 1121 234577999999999865 2357889999996532111 0111
Q ss_pred HHHHHHHHhhhccccccchhhHHHHHHHHHHHHHHhc
Q 018241 195 IEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALM 231 (359)
Q Consensus 195 l~~~~~~~~~~~~~~~~Sa~~~~~~~~ll~~i~~~L~ 231 (359)
...+..... .....+||+++.++.++++.+.+.+.
T Consensus 137 -~~~~a~~~~-~~~~e~SA~~g~~v~~lf~~l~~~~~ 171 (192)
T 2cjw_A 137 -GRAXAVVFD-XKFIETSAAVQHNVKELFEGIVRQVR 171 (192)
T ss_dssp -HHHHHHHTT-CEEEECBTTTTBSHHHHHHHHHHHHH
T ss_pred -HHHHHHHhC-CceEEeccccCCCHHHHHHHHHHHHH
Confidence 111111111 11146899999999999998888773
No 125
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=99.48 E-value=4.6e-14 Score=147.18 Aligned_cols=212 Identities=16% Similarity=0.187 Sum_probs=121.1
Q ss_pred CcEEEEEecCCCChhHHHHHHHhccccc-----c------CC------CCceeccceeEEEEeCCCccchhccccccccc
Q 018241 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQ-----A------AN------FPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKA 118 (359)
Q Consensus 56 ~~~i~ivG~pn~GKSTL~n~L~~~~~~~-----~------~~------~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~ 118 (359)
..+|+|+|++|+|||||+|+|++..... + .+ .+++|+......+.+.
T Consensus 10 ~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~---------------- 73 (693)
T 2xex_A 10 TRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWE---------------- 73 (693)
T ss_dssp EEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEET----------------
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEEC----------------
Confidence 4699999999999999999999532211 1 11 2455555555555444
Q ss_pred cCceEEEEecCCCcCCCCcCcchhhhHhhHHHhcccceEEeecCCC----------------ccEEEeCCcccCCcchHH
Q 018241 119 VPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFED----------------NDIVHVNGKVDPKSDVDV 182 (359)
Q Consensus 119 ~~~~i~lvDtpG~~~~~~~~~~~~~~~l~~i~~aD~il~Vvd~~~~----------------~~v~~v~nk~d~~~~~~~ 182 (359)
+.++.||||||+.++.. .+...++.+|++++|+|+.+. .+++.+.||+|....
T Consensus 74 -~~~i~liDTPG~~df~~-------~~~~~l~~aD~~llVvDa~~g~~~~~~~~~~~~~~~~~p~ilviNK~Dl~~~--- 142 (693)
T 2xex_A 74 -GHRVNIIDTPGHVDFTV-------EVERSLRVLDGAVTVLDAQSGVEPQTETVWRQATTYGVPRIVFVNKMDKLGA--- 142 (693)
T ss_dssp -TEEEEEECCCCCSSCCH-------HHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHHHTTCCEEEEEECTTSTTC---
T ss_pred -CeeEEEEECcCCcchHH-------HHHHHHHHCCEEEEEECCCCCCcHHHHHHHHHHHHcCCCEEEEEECCCcccc---
Confidence 46799999999976544 667888999999999999653 234455555554321
Q ss_pred HHhhhhhccHHHHHHHHHHHhhhccccccchhhHHHHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHH-HHhhhhcCCeE
Q 018241 183 INLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMDGKPARSVTLNDFERDSIK-QLCLLTMKPII 261 (359)
Q Consensus 183 i~~el~~~d~~~l~~~~~~~~~~~~~~~~Sa~~~~~~~~ll~~i~~~L~~~~~~~~~~~t~~~~e~i~-~~~~l~~kp~~ 261 (359)
....+++.+.+.+..........++. .+.+. .+..+..++..
T Consensus 143 -----------------------------------~~~~~~~~l~~~l~~~~~~~~ipisa--~~~~~~l~d~l~~~~~~ 185 (693)
T 2xex_A 143 -----------------------------------NFEYSVSTLHDRLQANAAPIQLPIGA--EDEFEAIIDLVEMKCFK 185 (693)
T ss_dssp -----------------------------------CHHHHHHHHHHHHCCCEEESEEEECC--GGGCCEEEETTTTEEEE
T ss_pred -----------------------------------chHHHHHHHHHHhCCCceeEEeeccc--CCCcceeeeeecceeEE
Confidence 12233334444432110000000000 00011 01122223322
Q ss_pred EE-E-e--CCCcccCCCCCChhHHHHHHHHHhcCCeEEEeeHHHHHHHcCCCHHHHHHHHHHcCCCCchHHHHHHHHHHh
Q 018241 262 YV-A-N--VAESDLADPGSNPHVNEVMNLASDLQSGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSL 337 (359)
Q Consensus 262 y~-~-n--v~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~sa~le~~l~~l~~~~~~~~l~~~~~~~~~l~~li~~~~~~ 337 (359)
|- - . ....+.+ ..+.+..+.+..+ +-+.+++.|++..++||++..++...+...++.++..
T Consensus 186 ~~~~~~~~~~~~~~~----~~~~~~~e~~r~~-----------l~e~l~e~dd~l~e~~l~~~~~~~~~~~~~l~~~~~~ 250 (693)
T 2xex_A 186 YTNDLGTEIEEIEIP----EDHLDRAEEARAS-----------LIEAVAETSDELMEKYLGDEEISVSELKEAIRQATTN 250 (693)
T ss_dssp CCSSSSCSCEEECCC----GGGHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHTTCCCCHHHHHHHHHHHHHT
T ss_pred eccCCCceeEEecCC----HHHHHHHHHHHHH-----------HHHHHhhCCHHHHHHHhcCCCCCHHHHHHHHHHHHHh
Confidence 21 0 0 0001222 3444455544433 5557788888889999999889888898999999999
Q ss_pred cCCeEEecC
Q 018241 338 LGLRTYFTS 346 (359)
Q Consensus 338 L~li~ffT~ 346 (359)
..+.|+|-.
T Consensus 251 ~~~~Pv~~g 259 (693)
T 2xex_A 251 VEFYPVLCG 259 (693)
T ss_dssp TSCEEEEEC
T ss_pred CCeeeEEEe
Confidence 999998853
No 126
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=99.48 E-value=2.5e-13 Score=141.77 Aligned_cols=220 Identities=14% Similarity=0.096 Sum_probs=122.8
Q ss_pred CCcEEEEEecCCCChhHHHHHHHhccccc-----cCC------------CCceeccceeEEEEeCCCccchhcccccccc
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQ-----AAN------------FPFCTIEPNVGIVAVPDPRLHVLSGLSKSQK 117 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~~~~~~~-----~~~------------~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~ 117 (359)
...+|+|+|++|+|||||+++|+...... +.+ ..+.|+......+.+.+.. ..
T Consensus 9 ~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~----------~~ 78 (704)
T 2rdo_7 9 RYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMA----------KQ 78 (704)
T ss_pred cccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCcc----------cc
Confidence 34799999999999999999997422110 110 1223333332333322100 00
Q ss_pred ccCceEEEEecCCCcCCCCcCcchhhhHhhHHHhcccceEEeecCCCc----------------cEEEeCCcccCCcchH
Q 018241 118 AVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDN----------------DIVHVNGKVDPKSDVD 181 (359)
Q Consensus 118 ~~~~~i~lvDtpG~~~~~~~~~~~~~~~l~~i~~aD~il~Vvd~~~~~----------------~v~~v~nk~d~~~~~~ 181 (359)
.....+.||||||..++.. .+...++.+|++++|+|+++.. +++.+.||+|..
T Consensus 79 ~~~~~i~liDTPG~~df~~-------~~~~~l~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~~ip~ilviNKiD~~---- 147 (704)
T 2rdo_7 79 YEPHRINIIDTPGHVDFTI-------EVERSMRVLDGAVMVYCAVGGVQPQSETVWRQANKYKVPRIAFVNKMDRM---- 147 (704)
T ss_pred CCceeEEEEeCCCccchHH-------HHHHHHHHCCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEeCCCcc----
Confidence 1126799999999986544 5677889999999999996531 122333333322
Q ss_pred HHHhhhhhccHHHHHHHHHHHhhhccccccchhhHHHHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHH-HHhhhhcCCe
Q 018241 182 VINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMDGKPARSVTLNDFERDSIK-QLCLLTMKPI 260 (359)
Q Consensus 182 ~i~~el~~~d~~~l~~~~~~~~~~~~~~~~Sa~~~~~~~~ll~~i~~~L~~~~~~~~~~~t~~~~e~i~-~~~~l~~kp~ 260 (359)
......+++.+.+.|.. ...+..++....+.++ .+++...+..
T Consensus 148 ----------------------------------~~~~~~~~~~l~~~l~~--~~~~~~~Pi~~~~~f~g~~dl~~~~~~ 191 (704)
T 2rdo_7 148 ----------------------------------GANFLKVVNQIKTRLGA--NPVPLQLAIGAEEHFTGVVDLVKMKAI 191 (704)
T ss_pred ----------------------------------cccHHHHHHHHHHHhCC--CceeEEccccccccccceeehhhhhhh
Confidence 12234455555555532 1122222221111122 1222233333
Q ss_pred EEEE-e----CCCcccCCCCCChhHHHHHHHHHhcCCeEEEeeHHHHHHHcCCCHHHHHHHHHHcCCCCchHHHHHHHHH
Q 018241 261 IYVA-N----VAESDLADPGSNPHVNEVMNLASDLQSGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTY 335 (359)
Q Consensus 261 ~y~~-n----v~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~sa~le~~l~~l~~~~~~~~l~~~~~~~~~l~~li~~~~ 335 (359)
.|-- + ....+++ ..+.+.+.++..+ +-+.+++.|++..++||++..++...+...++.++
T Consensus 192 ~~~~~~~g~~~~~~~~~----~~~~~~~~~~~~~-----------l~e~~ae~dd~l~e~~l~~~~l~~~~l~~~l~~~~ 256 (704)
T 2rdo_7 192 NWNDADQGVTFEYEDIP----ADMVELANEWHQN-----------LIESAAEASEELMEKYLGGEELTEAEIKGALRQRV 256 (704)
T ss_pred cccCccCCcceEEecCC----HHHHHHHHHHHHH-----------HHHHHHhcCHHHHHHHhcCCCCCHHHHHHHHHHHH
Confidence 3310 0 0001122 2344445444432 55678888888899999998888888888888888
Q ss_pred HhcCCeEEecC
Q 018241 336 SLLGLRTYFTS 346 (359)
Q Consensus 336 ~~L~li~ffT~ 346 (359)
....+.|+|-.
T Consensus 257 ~~~~~~Pv~~g 267 (704)
T 2rdo_7 257 LNNEIILVTCG 267 (704)
T ss_pred HhCCeeEEEEe
Confidence 88888888753
No 127
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.47 E-value=3.4e-13 Score=117.99 Aligned_cols=142 Identities=18% Similarity=0.145 Sum_probs=91.7
Q ss_pred CCcEEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCCcCC
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~~~ 134 (359)
..++|+++|.+|||||||+|+|+++.... .+..++.......+.+.+. ...+.+|||||...
T Consensus 27 ~~~ki~v~G~~~vGKSsli~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~---------------~~~~~l~Dt~G~~~- 88 (196)
T 2atv_A 27 AEVKLAIFGRAGVGKSALVVRFLTKRFIW--EYDPTLESTYRHQATIDDE---------------VVSMEILDTAGQED- 88 (196)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHSCCCS--CCCTTCCEEEEEEEEETTE---------------EEEEEEEECCCCCC-
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCc--ccCCCCCceEEEEEEECCE---------------EEEEEEEECCCCCc-
Confidence 45899999999999999999999654432 2222322222222333321 25699999999865
Q ss_pred CCcCcchhhhHhhHHHhcccceEEeecCC---------------------CccEEEeCCcccCCcchHHHHhhhhhccHH
Q 018241 135 ASQGEGLGNKFLSHIREVDSILQVVRCFE---------------------DNDIVHVNGKVDPKSDVDVINLELVFSDLD 193 (359)
Q Consensus 135 ~~~~~~~~~~~l~~i~~aD~il~Vvd~~~---------------------~~~v~~v~nk~d~~~~~~~i~~el~~~d~~ 193 (359)
. ......++.+|++++|+|+++ +.+++.+.||+|...+.... .+
T Consensus 89 ~-------~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~--------~~ 153 (196)
T 2atv_A 89 T-------IQREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVS--------TE 153 (196)
T ss_dssp C-------HHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGGCCSC--------HH
T ss_pred c-------cchhhhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhhCCCCCcEEEEEECcccccccccC--------HH
Confidence 1 144566789999999999876 23578999999976431110 11
Q ss_pred HHHHHHHHHhhhccccccchhhHH-HHHHHHHHHHHHhc
Q 018241 194 QIEKRMEKLKKGKAKDSQSKLKED-AEKAALEKIQQALM 231 (359)
Q Consensus 194 ~l~~~~~~~~~~~~~~~~Sa~~~~-~~~~ll~~i~~~L~ 231 (359)
.......... .....+||+.+. ++.++++.+.+.+.
T Consensus 154 ~~~~~~~~~~--~~~~~~Sa~~g~~gi~~l~~~l~~~i~ 190 (196)
T 2atv_A 154 EGEKLATELA--CAFYECSACTGEGNITEIFYELCREVR 190 (196)
T ss_dssp HHHHHHHHHT--SEEEECCTTTCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhC--CeEEEECCCcCCcCHHHHHHHHHHHHH
Confidence 1111111111 112468999998 99999998887774
No 128
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=99.47 E-value=1.5e-13 Score=123.30 Aligned_cols=144 Identities=19% Similarity=0.159 Sum_probs=90.1
Q ss_pred CcEEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCCcCCC
Q 018241 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA 135 (359)
Q Consensus 56 ~~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~~~~ 135 (359)
.+||+|+|.+|||||||+++++++... ....|....+...-.+.+.+. ...+.+|||||..++.
T Consensus 13 ~~KivlvGd~~VGKTsLi~r~~~~~f~-~~~~~Tig~d~~~k~~~~~~~---------------~v~l~iwDtaGqe~~~ 76 (216)
T 4dkx_A 13 KFKLVFLGEQSVGKTSLITRFMYDSFD-NTYQATIGIDFLSKTMYLEDR---------------TIRLQLWDTAGLERFR 76 (216)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHSCCC-----------CEEEEEECSSC---------------EEEEEEECCSCTTTCG
T ss_pred cEEEEEECcCCcCHHHHHHHHHhCCCC-CCcCCccceEEEEEEEEecce---------------EEEEEEEECCCchhhh
Confidence 379999999999999999999954432 222221112222223333322 2568999999987654
Q ss_pred CcCcchhhhHhhHHHhcccceEEeecCC--------------------CccEEEeCCcccCCcchHHHHhhhhhccHHHH
Q 018241 136 SQGEGLGNKFLSHIREVDSILQVVRCFE--------------------DNDIVHVNGKVDPKSDVDVINLELVFSDLDQI 195 (359)
Q Consensus 136 ~~~~~~~~~~l~~i~~aD~il~Vvd~~~--------------------~~~v~~v~nk~d~~~~~~~i~~el~~~d~~~l 195 (359)
. -....++.+|++++|+|..+ +.++++|.||+|...+..... +..
T Consensus 77 ~-------l~~~~~~~a~~~ilv~di~~~~Sf~~i~~~~~~i~~~~~~~~piilVgNK~Dl~~~r~V~~--------~e~ 141 (216)
T 4dkx_A 77 S-------LIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSI--------EEG 141 (216)
T ss_dssp G-------GHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECTTCGGGCCSCH--------HHH
T ss_pred h-------HHHHHhccccEEEEEeecchhHHHHHHHHHHHHHHHhcCCCCeEEEEeeccchHhcCcccH--------HHH
Confidence 4 33456789999999999877 346888999999654322111 111
Q ss_pred HHHHHHHhhhccccccchhhHHHHHHHHHHHHHHhcC
Q 018241 196 EKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMD 232 (359)
Q Consensus 196 ~~~~~~~~~~~~~~~~Sa~~~~~~~~ll~~i~~~L~~ 232 (359)
+....... .....+||+++.|+.++++.+.+.+..
T Consensus 142 ~~~a~~~~--~~~~e~SAktg~nV~e~F~~i~~~i~~ 176 (216)
T 4dkx_A 142 ERKAKELN--VMFIETSAKAGYNVKQLFRRVAAALPG 176 (216)
T ss_dssp HHHHHHHT--CEEEEEBTTTTBSHHHHHHHHHHHC--
T ss_pred hhHHHHhC--CeeEEEeCCCCcCHHHHHHHHHHHHHh
Confidence 22111111 112468999999999999999888853
No 129
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.47 E-value=5.2e-13 Score=117.01 Aligned_cols=151 Identities=17% Similarity=0.129 Sum_probs=88.5
Q ss_pred CCcEEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEE--EeCCCccchhccccccccccCceEEEEecCCCc
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIV--AVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLV 132 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~--~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~ 132 (359)
..+||+++|.+|||||||+|.+++..... +..+.+.....+ .+.+.. ...+.+|||||..
T Consensus 19 ~~~ki~~vG~~~vGKTsLi~~l~~~~~~~----~~~~~~~~~~~~~~~~~~~~--------------~~~l~i~Dt~G~~ 80 (196)
T 3llu_A 19 SKPRILLMGLRRSGKSSIQKVVFHKMSPN----ETLFLESTNKIYKDDISNSS--------------FVNFQIWDFPGQM 80 (196)
T ss_dssp -CCEEEEEESTTSSHHHHHHHHHSCCCGG----GGGGCCCCCSCEEEEECCTT--------------SCCEEEEECCSSC
T ss_pred cceEEEEECCCCCCHHHHHHHHHhcCCCc----ceeeeccccceeeeeccCCC--------------eeEEEEEECCCCH
Confidence 45899999999999999999999532221 111111221211 121111 3579999999986
Q ss_pred CCCCcCcchhhhHhhHHHhcccceEEeecCCC---------------------ccEEEeCCcccCCcchHHHHhhhhhcc
Q 018241 133 KGASQGEGLGNKFLSHIREVDSILQVVRCFED---------------------NDIVHVNGKVDPKSDVDVINLELVFSD 191 (359)
Q Consensus 133 ~~~~~~~~~~~~~l~~i~~aD~il~Vvd~~~~---------------------~~v~~v~nk~d~~~~~~~i~~el~~~d 191 (359)
+.... .......++++|++++|+|+++. .+++.+.||+|.+.+......+-....
T Consensus 81 ~~~~~----~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~v~~ 156 (196)
T 3llu_A 81 DFFDP----TFDYEMIFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKVNPDMNFEVFIHKVDGLSDDHKIETQRDIHQ 156 (196)
T ss_dssp CTTCT----TCCHHHHHHTCSEEEEEEETTSCCHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHH
T ss_pred HHHhh----hhhcccccccCCEEEEEEECCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeccccCchhhhhHHHhHHHH
Confidence 54331 00014567889999999999873 357889999998754322221100000
Q ss_pred HHHHHHHHHHHh---hhccccccchhhHHHHHHHHHHHHHHh
Q 018241 192 LDQIEKRMEKLK---KGKAKDSQSKLKEDAEKAALEKIQQAL 230 (359)
Q Consensus 192 ~~~l~~~~~~~~---~~~~~~~~Sa~~~~~~~~ll~~i~~~L 230 (359)
. ....+.... .......+||++ .++.++++.+.+.+
T Consensus 157 -~-~~~~~~~~~~~~~~~~~~e~Sa~~-~~v~~~f~~l~~~l 195 (196)
T 3llu_A 157 -R-ANDDLADAGLEKLHLSFYLTSIYD-HSIFEAFSKVVQKL 195 (196)
T ss_dssp -H-HHHHHHHTTCTTSCEEEEEECTTS-THHHHHHHHHHHHT
T ss_pred -H-HHHHHHHhhhhcCCcceEEEEech-hhHHHHHHHHHHHh
Confidence 0 011111100 001114679999 99999999887754
No 130
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=99.47 E-value=3.8e-14 Score=125.96 Aligned_cols=154 Identities=18% Similarity=0.147 Sum_probs=90.9
Q ss_pred CCcEEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCCcCC
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~~~ 134 (359)
..++|+|+|.+|||||||+|+|++... .....|..+.+.....+.+++... .-...+.....+.||||||....
T Consensus 24 ~~~ki~vvG~~~~GKSsLi~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~l~l~Dt~G~~~~ 97 (217)
T 2f7s_A 24 YLIKLLALGDSGVGKTTFLYRYTDNKF-NPKFITTVGIDFREKRVVYNAQGP-----NGSSGKAFKVHLQLWDTAGQERF 97 (217)
T ss_dssp EEEEEEEESCTTSSHHHHHHHHHCSCC-CCEEEEEEEEEEEEEEEEEEC------------CCEEEEEEEEEEEESHHHH
T ss_pred eeEEEEEECcCCCCHHHHHHHHhcCCC-CcCCCCceeEEEEEEEEEECCccc-----cccccCceeEEEEEEECCCcHhH
Confidence 348999999999999999999995433 212222222222233333332100 00000111356999999996432
Q ss_pred CCcCcchhhhHhhHHHhcccceEEeecCC---------------------CccEEEeCCcccCCcchHHHHhhhhhccHH
Q 018241 135 ASQGEGLGNKFLSHIREVDSILQVVRCFE---------------------DNDIVHVNGKVDPKSDVDVINLELVFSDLD 193 (359)
Q Consensus 135 ~~~~~~~~~~~l~~i~~aD~il~Vvd~~~---------------------~~~v~~v~nk~d~~~~~~~i~~el~~~d~~ 193 (359)
...+...++.+|++++|+|+++ ..+++.+.||+|...+... ..+
T Consensus 98 -------~~~~~~~~~~~d~iilV~D~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v--------~~~ 162 (217)
T 2f7s_A 98 -------RSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREV--------NER 162 (217)
T ss_dssp -------HHHHHHHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCS--------CHH
T ss_pred -------HhHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCCEEEEEECCcccccccc--------CHH
Confidence 2245567789999999999865 2357889999997542211 011
Q ss_pred HHHHHHHHHhhhccccccchhhHHHHHHHHHHHHHHhc
Q 018241 194 QIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALM 231 (359)
Q Consensus 194 ~l~~~~~~~~~~~~~~~~Sa~~~~~~~~ll~~i~~~L~ 231 (359)
.+........ .....+||+.+.++.++++.+.+.+.
T Consensus 163 ~~~~~~~~~~--~~~~~~Sa~~g~gi~~l~~~l~~~i~ 198 (217)
T 2f7s_A 163 QARELADKYG--IPYFETSAATGQNVEKAVETLLDLIM 198 (217)
T ss_dssp HHHHHHHHTT--CCEEEEBTTTTBTHHHHHHHHHHHHH
T ss_pred HHHHHHHHCC--CcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 1111111111 11256899999999999888877763
No 131
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.47 E-value=3.9e-14 Score=126.49 Aligned_cols=145 Identities=14% Similarity=0.035 Sum_probs=97.5
Q ss_pred CCcEEEEEecCCCChhHHHHHHH-hccccccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCCcC
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVV-ENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVK 133 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~-~~~~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~~ 133 (359)
..++|+++|.+|||||||+|+++ +.......+.+++|.......+ ... ...+.+|||||...
T Consensus 14 ~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~---------------~~~~~i~Dt~G~~~ 76 (221)
T 3gj0_A 14 VQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHT--NRG---------------PIKFNVWDTAGQEK 76 (221)
T ss_dssp CEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEE--TTE---------------EEEEEEEEECSGGG
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEE--CCE---------------EEEEEEEeCCChHH
Confidence 44899999999999999999954 3334555667777755544332 211 35699999999754
Q ss_pred CCCcCcchhhhHhhHHHhcccceEEeecCC-------------------CccEEEeCCcccCCcchHHHHhhhhhccHHH
Q 018241 134 GASQGEGLGNKFLSHIREVDSILQVVRCFE-------------------DNDIVHVNGKVDPKSDVDVINLELVFSDLDQ 194 (359)
Q Consensus 134 ~~~~~~~~~~~~l~~i~~aD~il~Vvd~~~-------------------~~~v~~v~nk~d~~~~~~~i~~el~~~d~~~ 194 (359)
... .....++++|++++|+|+++ +.+++.+.||+|....... .+ ...
T Consensus 77 ~~~-------~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~--~~--~~~--- 142 (221)
T 3gj0_A 77 FGG-------LRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVK--AK--SIV--- 142 (221)
T ss_dssp TSC-------CCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSTTCCEEEEEECTTSSSCSSC--GG--GCC---
T ss_pred HhH-------HHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECCcccccccc--HH--HHH---
Confidence 433 23445678999999999877 3468899999997643211 11 111
Q ss_pred HHHHHHHHhhhccccccchhhHHHHHHHHHHHHHHhcCCCC
Q 018241 195 IEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMDGKP 235 (359)
Q Consensus 195 l~~~~~~~~~~~~~~~~Sa~~~~~~~~ll~~i~~~L~~~~~ 235 (359)
+.+.. . .....+||+.+.++.++++.+.+.+...+.
T Consensus 143 ~~~~~----~-~~~~~~Sa~~~~gi~~l~~~l~~~l~~~~~ 178 (221)
T 3gj0_A 143 FHRKK----N-LQYYDISAKSNYNFEKPFLWLARKLIGDPN 178 (221)
T ss_dssp HHHHH----T-CEEEECBGGGTBTTTHHHHHHHHHHHTCTT
T ss_pred HHHHc----C-CEEEEEeCCCCCCHHHHHHHHHHHHHhCcc
Confidence 11111 1 111568999999999999999988865543
No 132
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=99.47 E-value=2.4e-13 Score=116.55 Aligned_cols=139 Identities=13% Similarity=0.076 Sum_probs=88.0
Q ss_pred CcEEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCCcCCC
Q 018241 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA 135 (359)
Q Consensus 56 ~~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~~~~ 135 (359)
.++|+++|.+|||||||+|+++++.... +..|+.+.....+.+++. ...+.+|||||...
T Consensus 7 ~~ki~~vG~~~vGKTsli~~l~~~~~~~---~~~t~~~~~~~~~~~~~~---------------~~~l~i~Dt~G~~~-- 66 (178)
T 2iwr_A 7 ELRLGVLGDARSGKSSLIHRFLTGSYQV---LEKTESEQYKKEMLVDGQ---------------THLVLIREEAGAPD-- 66 (178)
T ss_dssp EEEEEEECCGGGCHHHHHHHHHHSCCCC---CSSCSSSEEEEEEEETTE---------------EEEEEEEECSSSCC--
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCC---cCCCcceeEEEEEEECCE---------------EEEEEEEECCCCch--
Confidence 4799999999999999999999665543 222332233333444321 24689999999753
Q ss_pred CcCcchhhhHhhHHHhcccceEEeecCC-----------------------CccEEEeCCcccCCcchHHHHhhhhhccH
Q 018241 136 SQGEGLGNKFLSHIREVDSILQVVRCFE-----------------------DNDIVHVNGKVDPKSDVDVINLELVFSDL 192 (359)
Q Consensus 136 ~~~~~~~~~~l~~i~~aD~il~Vvd~~~-----------------------~~~v~~v~nk~d~~~~~~~i~~el~~~d~ 192 (359)
...++++|++++|+|+++ +.+++.+.||+|....... ....
T Consensus 67 ----------~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~------~v~~ 130 (178)
T 2iwr_A 67 ----------AKFSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPR------VVGD 130 (178)
T ss_dssp ----------HHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCBTTBCC------CSCH
T ss_pred ----------hHHHHhCCEEEEEEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccccC------cCCH
Confidence 245688999999999876 2357889999996311000 0011
Q ss_pred HHHHHHHHHHhhhccccccchhhHHHHHHHHHHHHHHhc
Q 018241 193 DQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALM 231 (359)
Q Consensus 193 ~~l~~~~~~~~~~~~~~~~Sa~~~~~~~~ll~~i~~~L~ 231 (359)
+........... .....+||+.+.++.++++.+.+.+.
T Consensus 131 ~~~~~~~~~~~~-~~~~~~Sa~~~~~i~~lf~~l~~~~~ 168 (178)
T 2iwr_A 131 ARARALXADMKR-CSYYETXATYGLNVDRVFQEVAQKVV 168 (178)
T ss_dssp HHHHHHHHHHSS-EEEEEEBTTTTBTHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhcC-CeEEEEeccccCCHHHHHHHHHHHHH
Confidence 111221111111 11256899999999999988877763
No 133
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=99.46 E-value=3.1e-13 Score=117.26 Aligned_cols=142 Identities=18% Similarity=0.156 Sum_probs=88.1
Q ss_pred CcEEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCCcCCC
Q 018241 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA 135 (359)
Q Consensus 56 ~~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~~~~ 135 (359)
.++|+++|.+|||||||+|+|+++... ..++.++.+.....+.+.+. ...+.+|||||..+..
T Consensus 21 ~~ki~vvG~~~~GKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~---------------~~~~~l~Dt~G~~~~~ 83 (190)
T 3con_A 21 EYKLVVVGAGGVGKSALTIQLIQNHFV--DEYDPTIEDSYRKQVVIDGE---------------TCLLDILDTAGQEEYS 83 (190)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSSCC--SCCCTTCCEEEEEEEEETTE---------------EEEEEEEECCC-----
T ss_pred eeEEEEECcCCCCHHHHHHHHHcCCCc--cccCCccceEEEEEEEECCE---------------EEEEEEEECCChHHHH
Confidence 379999999999999999999965432 34444554444444444321 2458999999975443
Q ss_pred CcCcchhhhHhhHHHhcccceEEeecCC---------------------CccEEEeCCcccCCcchHHHHhhhhhccHHH
Q 018241 136 SQGEGLGNKFLSHIREVDSILQVVRCFE---------------------DNDIVHVNGKVDPKSDVDVINLELVFSDLDQ 194 (359)
Q Consensus 136 ~~~~~~~~~~l~~i~~aD~il~Vvd~~~---------------------~~~v~~v~nk~d~~~~~~~i~~el~~~d~~~ 194 (359)
. .....++.+|++++|+|+.+ +.+++.+.||+|..... . ..+.
T Consensus 84 ~-------~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~-~--------~~~~ 147 (190)
T 3con_A 84 A-------MRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPTRT-V--------DTKQ 147 (190)
T ss_dssp -------------CTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCCC-S--------CHHH
T ss_pred H-------HHHHhhCcCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCcCCccc-C--------CHHH
Confidence 3 23345678999999999876 24678999999965411 0 0111
Q ss_pred HHHHHHHHhhhccccccchhhHHHHHHHHHHHHHHhcC
Q 018241 195 IEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMD 232 (359)
Q Consensus 195 l~~~~~~~~~~~~~~~~Sa~~~~~~~~ll~~i~~~L~~ 232 (359)
+........ .....+||+.+.++.++++.+.+.+.+
T Consensus 148 ~~~~~~~~~--~~~~~~Sa~~~~gi~~l~~~l~~~~~~ 183 (190)
T 3con_A 148 AHELAKSYG--IPFIETSAKTRQGVEDAFYTLVREIRQ 183 (190)
T ss_dssp HHHHHHHHT--CCEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHcC--CeEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 111111111 112467899999999999988887743
No 134
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=99.46 E-value=6.2e-13 Score=117.85 Aligned_cols=151 Identities=15% Similarity=0.133 Sum_probs=90.7
Q ss_pred CCcEEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCCcCC
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~~~ 134 (359)
..++|+++|.+|||||||+|+|++.... . .+..|+.......+.+.+. ...+.+|||||....
T Consensus 27 ~~~ki~vvG~~~vGKSsLi~~l~~~~~~-~-~~~~t~~~~~~~~~~~~~~---------------~~~l~i~Dt~G~~~~ 89 (205)
T 1gwn_A 27 VKCKIVVVGDSQCGKTALLHVFAKDCFP-E-NYVPTVFENYTASFEIDTQ---------------RIELSLWDTSGSPYY 89 (205)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCCC-S-SCCCCSEEEEEEEEESSSS---------------EEEEEEEEECCSGGG
T ss_pred eeeEEEEECCCCCCHHHHHHHHhcCCCC-C-CcCCccceeEEEEEEECCE---------------EEEEEEEeCCCcHhh
Confidence 3479999999999999999999965432 1 2222222222222333221 256999999998644
Q ss_pred CCcCcchhhhHhhHHHhcccceEEeecCC--------------------CccEEEeCCcccCCcchHHHHh---h-hhhc
Q 018241 135 ASQGEGLGNKFLSHIREVDSILQVVRCFE--------------------DNDIVHVNGKVDPKSDVDVINL---E-LVFS 190 (359)
Q Consensus 135 ~~~~~~~~~~~l~~i~~aD~il~Vvd~~~--------------------~~~v~~v~nk~d~~~~~~~i~~---e-l~~~ 190 (359)
.. .....++.+|++++|+|+++ +.+++.+.||+|...+...+.. + ....
T Consensus 90 ~~-------~~~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v 162 (205)
T 1gwn_A 90 DN-------VRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPV 162 (205)
T ss_dssp TT-------TGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCC
T ss_pred hH-------HHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEechhhccchhhhhhhcccccCCC
Confidence 33 22334578999999999875 2357889999998754322211 0 0011
Q ss_pred cHHHHHHHHHHHhhhccccccchh-hHHHHHHHHHHHHHHh
Q 018241 191 DLDQIEKRMEKLKKGKAKDSQSKL-KEDAEKAALEKIQQAL 230 (359)
Q Consensus 191 d~~~l~~~~~~~~~~~~~~~~Sa~-~~~~~~~ll~~i~~~L 230 (359)
..+........+.. .....+||+ .+.++.++++.+.+.+
T Consensus 163 ~~~~~~~~~~~~~~-~~~~e~SAk~~~~gv~~lf~~l~~~~ 202 (205)
T 1gwn_A 163 SYDQGANMAKQIGA-ATYIECSALQSENSVRDIFHVATLAC 202 (205)
T ss_dssp CHHHHHHHHHHHTC-SEEEECCTTTCHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCC-CEEEEeeeccCCcCHHHHHHHHHHHH
Confidence 11222221112111 111468998 6889999998887654
No 135
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.46 E-value=1.3e-13 Score=119.73 Aligned_cols=151 Identities=13% Similarity=0.044 Sum_probs=90.3
Q ss_pred CCcEEEEEecCCCChhHHHHHHHhccccccCCCC---ceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCC
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFP---FCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGL 131 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p---~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~ 131 (359)
..++|+++|.+|||||||+|.+.+.......... .+...++.+.- +.... +........++.+|||||.
T Consensus 13 ~~~ki~vvG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~t~~~~-~~~~~-------~~~~~~~~~~~~i~Dt~G~ 84 (198)
T 3t1o_A 13 INFKIVYYGPGLSGKTTNLKWIYSKVPEGRKGEMVSLATEDERTLFFD-FLPLD-------IGEVKGFKTRFHLYTVPGQ 84 (198)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHTSCGGGBCCCEEEECSSCEEEEEE-ECCSS-------CCCSSSCEEEEEEEECCSC
T ss_pred cccEEEEECCCCCCHHHHHHHHHhhccccccccccccccccccceeee-ecccc-------cccccCCceEEEEEeCCCh
Confidence 3479999999999999999999854332211100 00012233321 11100 0001111357999999998
Q ss_pred cCCCCcCcchhhhHhhHHHhcccceEEeecCC-------------------------CccEEEeCCcccCCcchHHHHhh
Q 018241 132 VKGASQGEGLGNKFLSHIREVDSILQVVRCFE-------------------------DNDIVHVNGKVDPKSDVDVINLE 186 (359)
Q Consensus 132 ~~~~~~~~~~~~~~l~~i~~aD~il~Vvd~~~-------------------------~~~v~~v~nk~d~~~~~~~i~~e 186 (359)
.+... .....++++|++++|+|+++ +.+++.+.||+|...+..
T Consensus 85 ~~~~~-------~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~piilv~NK~Dl~~~~~----- 152 (198)
T 3t1o_A 85 VFYNA-------SRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGLTLDDVPIVIQVNKRDLPDALP----- 152 (198)
T ss_dssp CSCSH-------HHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCTTSSCEEEEEECTTSTTCCC-----
T ss_pred HHHHH-------HHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhccccCCCCEEEEEEchhcccccC-----
Confidence 65443 34456789999999999982 346889999999764311
Q ss_pred hhhccHHHHHHHHHHHhhhccccccchhhHHHHHHHHHHHHHHhc
Q 018241 187 LVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALM 231 (359)
Q Consensus 187 l~~~d~~~l~~~~~~~~~~~~~~~~Sa~~~~~~~~ll~~i~~~L~ 231 (359)
.+.+......... .....+||+.+.++.++++.+.+.+.
T Consensus 153 -----~~~~~~~~~~~~~-~~~~~~Sa~~~~gv~~l~~~l~~~i~ 191 (198)
T 3t1o_A 153 -----VEMVRAVVDPEGK-FPVLEAVATEGKGVFETLKEVSRLVL 191 (198)
T ss_dssp -----HHHHHHHHCTTCC-SCEEECBGGGTBTHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHhcCC-ceEEEEecCCCcCHHHHHHHHHHHHH
Confidence 1111221111111 01146799999999999988877763
No 136
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=99.46 E-value=4.2e-13 Score=116.79 Aligned_cols=142 Identities=13% Similarity=0.051 Sum_probs=89.5
Q ss_pred CCcEEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCCcCC
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~~~ 134 (359)
..++|+++|.+|||||||+|+|+++... ..+..|+.+.....+.+.+. ...+.+|||||....
T Consensus 20 ~~~ki~vvG~~~vGKTsLi~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~---------------~~~l~i~Dt~G~~~~ 82 (187)
T 3c5c_A 20 LEVNLAILGRRGAGKSALTVKFLTKRFI--SEYDPNLEDTYSSEETVDHQ---------------PVHLRVMDTADLDTP 82 (187)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSSCC--SCCCTTCCEEEEEEEEETTE---------------EEEEEEEECCC---C
T ss_pred ceEEEEEECCCCCcHHHHHHHHHhCCCC--cccCCCccceeeEEEEECCE---------------EEEEEEEECCCCCcc
Confidence 3479999999999999999999965432 34444443332223333321 246889999998654
Q ss_pred CCcCcchhhhHhhHHHhcccceEEeecCC-----------------------CccEEEeCCcccCCcchHHHHhhhhhcc
Q 018241 135 ASQGEGLGNKFLSHIREVDSILQVVRCFE-----------------------DNDIVHVNGKVDPKSDVDVINLELVFSD 191 (359)
Q Consensus 135 ~~~~~~~~~~~l~~i~~aD~il~Vvd~~~-----------------------~~~v~~v~nk~d~~~~~~~i~~el~~~d 191 (359)
.. + ...++.+|++++|+|+++ +.+++.+.||+|...+... .
T Consensus 83 ~~----~----~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v--------~ 146 (187)
T 3c5c_A 83 RN----C----ERYLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQYRQV--------T 146 (187)
T ss_dssp CC----T----HHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGGGCSS--------C
T ss_pred hh----H----HHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhhcCcc--------C
Confidence 33 2 245678999999999875 2357889999997532211 1
Q ss_pred HHHHHHHHHHHhhhccccccch-hhHHHHHHHHHHHHHHhc
Q 018241 192 LDQIEKRMEKLKKGKAKDSQSK-LKEDAEKAALEKIQQALM 231 (359)
Q Consensus 192 ~~~l~~~~~~~~~~~~~~~~Sa-~~~~~~~~ll~~i~~~L~ 231 (359)
.+...+...... .....+|| +.+.++.++++.+.+.+.
T Consensus 147 ~~~~~~~~~~~~--~~~~e~Sa~~~g~gv~~lf~~l~~~i~ 185 (187)
T 3c5c_A 147 KAEGVALAGRFG--CLFFEVSACLDFEHVQHVFHEAVREAR 185 (187)
T ss_dssp HHHHHHHHHHHT--CEEEECCSSSCSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcC--CcEEEEeecCccccHHHHHHHHHHHHh
Confidence 111112111111 11246899 899999999998887764
No 137
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=99.45 E-value=1.2e-13 Score=144.03 Aligned_cols=212 Identities=16% Similarity=0.142 Sum_probs=122.9
Q ss_pred CcEEEEEecCCCChhHHHHHHHhcccc-----ccCC------------CCceeccceeEEEEeCCCccchhccccccccc
Q 018241 56 SLRAGIVGLPNVGKSTLFNAVVENGKA-----QAAN------------FPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKA 118 (359)
Q Consensus 56 ~~~i~ivG~pn~GKSTL~n~L~~~~~~-----~~~~------------~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~ 118 (359)
..+|+|+|++|+|||||+|+|+..... .+.. ..+.|+......+.+.
T Consensus 12 ~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~~---------------- 75 (691)
T 1dar_A 12 LRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWK---------------- 75 (691)
T ss_dssp EEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEET----------------
T ss_pred ccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEEC----------------
Confidence 469999999999999999999842211 0110 2234444443333333
Q ss_pred cCceEEEEecCCCcCCCCcCcchhhhHhhHHHhcccceEEeecCCCc----------------cEEEeCCcccCCcchHH
Q 018241 119 VPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDN----------------DIVHVNGKVDPKSDVDV 182 (359)
Q Consensus 119 ~~~~i~lvDtpG~~~~~~~~~~~~~~~l~~i~~aD~il~Vvd~~~~~----------------~v~~v~nk~d~~~~~~~ 182 (359)
+..+.||||||..++.. .+...++.+|++++|+|+.+.. +++.+.||+|...
T Consensus 76 -~~~i~liDTPG~~df~~-------~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~---- 143 (691)
T 1dar_A 76 -DHRINIIDTPGHVDFTI-------EVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKYKVPRIAFANKMDKTG---- 143 (691)
T ss_dssp -TEEEEEECCCSSTTCHH-------HHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEECTTSTT----
T ss_pred -CeEEEEEECcCccchHH-------HHHHHHHHCCEEEEEEECCCCcchhhHHHHHHHHHcCCCEEEEEECCCccc----
Confidence 46799999999976443 6778889999999999996531 2333444444321
Q ss_pred HHhhhhhccHHHHHHHHHHHhhhccccccchhhHHHHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHH-HHhhhhcCCeE
Q 018241 183 INLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMDGKPARSVTLNDFERDSIK-QLCLLTMKPII 261 (359)
Q Consensus 183 i~~el~~~d~~~l~~~~~~~~~~~~~~~~Sa~~~~~~~~ll~~i~~~L~~~~~~~~~~~t~~~~e~i~-~~~~l~~kp~~ 261 (359)
.....+++.+.+.+... ..+..++....+.+. -++++..++..
T Consensus 144 ----------------------------------~~~~~~~~~l~~~l~~~--~~~~~~Pi~~~~~~~g~~d~~~~~~~~ 187 (691)
T 1dar_A 144 ----------------------------------ADLWLVIRTMQERLGAR--PVVMQLPIGREDTFSGIIDVLRMKAYT 187 (691)
T ss_dssp ----------------------------------CCHHHHHHHHHHTTCCC--EEECEEEESCGGGCCEEEETTTTEEEE
T ss_pred ----------------------------------CCHHHHHHHHHHHhCCC--ccceeccccCCCcccchhhhhcceeeE
Confidence 11233444454444211 111111100001111 12333444444
Q ss_pred EEEe----CCCcccCCCCCChhHHHHHHHHHhcCCeEEEeeHHHHHHHcCCCHHHHHHHHHHcCCCCchHHHHHHHHHHh
Q 018241 262 YVAN----VAESDLADPGSNPHVNEVMNLASDLQSGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSL 337 (359)
Q Consensus 262 y~~n----v~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~sa~le~~l~~l~~~~~~~~l~~~~~~~~~l~~li~~~~~~ 337 (359)
|-.+ ....+++ +.+.+..+++..+ +-+.+++.+++..++||++..++...+...++..+..
T Consensus 188 ~~~~~g~~~~~~~~~----~~~~~~~~~~r~~-----------l~e~~~e~dd~l~e~~l~~~~~~~~~~~~~~~~~~~~ 252 (691)
T 1dar_A 188 YGNDLGTDIREIPIP----EEYLDQAREYHEK-----------LVEVAADFDENIMLKYLEGEEPTEEELVAAIRKGTID 252 (691)
T ss_dssp ECSTTSCCEEEECCC----GGGHHHHHHHHHH-----------HHHHHTTTCHHHHHHHHHTCCCCHHHHHHHHHHHHHT
T ss_pred eccCCCceeEEecCC----HHHHHHHHHHHHH-----------HHHHHhhCCHHHHHHHHCCCCCCHHHHHHHHHHHHHh
Confidence 4200 0011233 4456666665543 5667888888889999999999888899999999988
Q ss_pred cCCeEEecC
Q 018241 338 LGLRTYFTS 346 (359)
Q Consensus 338 L~li~ffT~ 346 (359)
..+.|+|..
T Consensus 253 ~~~~Pv~~g 261 (691)
T 1dar_A 253 LKITPVFLG 261 (691)
T ss_dssp TSCEEEEEC
T ss_pred CcEeEEEEe
Confidence 899999863
No 138
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.45 E-value=4.1e-13 Score=117.06 Aligned_cols=142 Identities=18% Similarity=0.166 Sum_probs=89.9
Q ss_pred CCcEEEEEecCCCChhHHHHHHHhccccccCCCCceecccee-EEEEeCCCccchhccccccccccCceEEEEecCCCcC
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNV-GIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVK 133 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~-g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~~ 133 (359)
..++|+++|.+|||||||+|+|+++.... ...| |..... ..+..... ...+.+|||||...
T Consensus 7 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~-~~~~--t~~~~~~~~~~~~~~---------------~~~~~l~Dt~G~~~ 68 (199)
T 2gf0_A 7 NDYRVVVFGAGGVGKSSLVLRFVKGTFRD-TYIP--TIEDTYRQVISCDKS---------------VCTLQITDTTGSHQ 68 (199)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHSCCCC-TTSC--CCCEEEEEEEEETTE---------------EEEEEEEECCGGGS
T ss_pred CeeEEEEECCCCCcHHHHHHHHHcCCCCC-cccC--ccccceeEEEEECCE---------------EEEEEEEeCCChHH
Confidence 45899999999999999999999654321 1111 111111 11222211 24689999999754
Q ss_pred CCCcCcchhhhHhhHHHhcccceEEeecCC----------------------CccEEEeCCcccCCcchHHHHhhhhhcc
Q 018241 134 GASQGEGLGNKFLSHIREVDSILQVVRCFE----------------------DNDIVHVNGKVDPKSDVDVINLELVFSD 191 (359)
Q Consensus 134 ~~~~~~~~~~~~l~~i~~aD~il~Vvd~~~----------------------~~~v~~v~nk~d~~~~~~~i~~el~~~d 191 (359)
... .....++.+|++++|+|+++ +.+++.+.||+|..... . .
T Consensus 69 ~~~-------~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~~~-~-~------- 132 (199)
T 2gf0_A 69 FPA-------MQRLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQRE-V-D------- 132 (199)
T ss_dssp CHH-------HHHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSSCS-S-C-------
T ss_pred hHH-------HHHHhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCCccc-c-C-------
Confidence 332 34456788999999999875 23688999999976411 0 0
Q ss_pred HHHHHHHHHHHhhhccccccchhhHHHHHHHHHHHHHHhcC
Q 018241 192 LDQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMD 232 (359)
Q Consensus 192 ~~~l~~~~~~~~~~~~~~~~Sa~~~~~~~~ll~~i~~~L~~ 232 (359)
.+.......... .....+||+.+.++.++++.+.+.+.+
T Consensus 133 ~~~~~~~~~~~~--~~~~~~Sa~~~~gi~~l~~~l~~~~~~ 171 (199)
T 2gf0_A 133 TREAQAVAQEWK--CAFMETSAKMNYNVKELFQELLTLETR 171 (199)
T ss_dssp HHHHHHHHHHHT--CEEEECBTTTTBSHHHHHHHHHHHCSS
T ss_pred HHHHHHHHHHhC--CeEEEEecCCCCCHHHHHHHHHHHHhh
Confidence 011111111111 111468999999999999999988854
No 139
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.45 E-value=2.7e-13 Score=117.23 Aligned_cols=143 Identities=20% Similarity=0.128 Sum_probs=91.4
Q ss_pred cEEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCCcCCCC
Q 018241 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGAS 136 (359)
Q Consensus 57 ~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~~~~~ 136 (359)
++|+++|.+|||||||+|+|++. ...++..|++|.+.....+ . .+.+|||||+.....
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~-~~~~~~~~~~t~~~~~~~~--~-------------------~~~l~Dt~G~~~~~~ 59 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGK-KVRRGKRPGVTRKIIEIEW--K-------------------NHKIIDMPGFGFMMG 59 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSC-CCSSSSSTTCTTSCEEEEE--T-------------------TEEEEECCCBSCCTT
T ss_pred cEEEEECCCCCCHHHHHHHHhCc-CCccCCCCCccceeEEEec--C-------------------CEEEEECCCcccccc
Confidence 68999999999999999999944 4667778888876654332 1 489999999753321
Q ss_pred cC----cchh---hhHhhH-HHhcccceEEeecCC---------------------------CccEEEeCCcccCCcchH
Q 018241 137 QG----EGLG---NKFLSH-IREVDSILQVVRCFE---------------------------DNDIVHVNGKVDPKSDVD 181 (359)
Q Consensus 137 ~~----~~~~---~~~l~~-i~~aD~il~Vvd~~~---------------------------~~~v~~v~nk~d~~~~~~ 181 (359)
.. +.+. ..++.. ...++++++|+|... +.+++.+.||+|...+..
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~ 139 (190)
T 2cxx_A 60 LPKEVQERIKDEIVHFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIKNVQ 139 (190)
T ss_dssp SCHHHHHHHHHHHHHHHHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGCSCHH
T ss_pred CCHHHHHHHHHHHHHHHHhhhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCceEEEeehHhccCcHH
Confidence 11 1111 122222 444667777777642 346889999999775431
Q ss_pred HHHhhhhhccHHHHHHHHHHHhhhc-----cccccchhhHHHHHHHHHHHHHHhcC
Q 018241 182 VINLELVFSDLDQIEKRMEKLKKGK-----AKDSQSKLKEDAEKAALEKIQQALMD 232 (359)
Q Consensus 182 ~i~~el~~~d~~~l~~~~~~~~~~~-----~~~~~Sa~~~~~~~~ll~~i~~~L~~ 232 (359)
. ..+.....+.... ....+||+.+.++.++++.+.+.+.+
T Consensus 140 ~-----------~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~ 184 (190)
T 2cxx_A 140 E-----------VINFLAEKFEVPLSEIDKVFIPISAKFGDNIERLKNRIFEVIRE 184 (190)
T ss_dssp H-----------HHHHHHHHHTCCGGGHHHHEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred H-----------HHHHHHHHhhhhhhccCCcEEEEecCCCCCHHHHHHHHHHhcch
Confidence 1 0111111111100 11468999999999999999888754
No 140
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=99.45 E-value=5.1e-14 Score=125.23 Aligned_cols=146 Identities=14% Similarity=0.056 Sum_probs=90.4
Q ss_pred cCCcEEEEEecCCCChhHHHHHHHhccccc-cCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCCc
Q 018241 54 SMSLRAGIVGLPNVGKSTLFNAVVENGKAQ-AANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLV 132 (359)
Q Consensus 54 ~~~~~i~ivG~pn~GKSTL~n~L~~~~~~~-~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~ 132 (359)
...++|+++|.+|||||||+|+|+++.... .....+++ .........+. ....+.+|||||..
T Consensus 9 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~--~~~~~~~~~~~--------------~~~~~~l~Dt~G~~ 72 (218)
T 4djt_A 9 ELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAV--NHPVTFLDDQG--------------NVIKFNVWDTAGQE 72 (218)
T ss_dssp -CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEE--EEEEEEEBTTS--------------CEEEEEEEEECSGG
T ss_pred cCccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccee--eEEEEEEeCCC--------------cEEEEEEEecCCch
Confidence 345899999999999999999999554321 11111111 11111111110 01469999999986
Q ss_pred CCCCcCcchhhhHhhHHHhcccceEEeecCCC--------------------ccEEEeCCcccCCcchHHHHhhhhhccH
Q 018241 133 KGASQGEGLGNKFLSHIREVDSILQVVRCFED--------------------NDIVHVNGKVDPKSDVDVINLELVFSDL 192 (359)
Q Consensus 133 ~~~~~~~~~~~~~l~~i~~aD~il~Vvd~~~~--------------------~~v~~v~nk~d~~~~~~~i~~el~~~d~ 192 (359)
.... .....++.+|++++|+|+++. .+++.+.||+|..........
T Consensus 73 ~~~~-------~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~------- 138 (218)
T 4djt_A 73 KKAV-------LKDVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKIDIKNRQKISKK------- 138 (218)
T ss_dssp GTSC-------CCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCSSSCEEEEEECTTCC----CCHH-------
T ss_pred hhch-------HHHHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHH-------
Confidence 5443 223456789999999999862 468899999997643211111
Q ss_pred HHHHHHHHHHhhhc--cccccchhhHHHHHHHHHHHHHHhcCCC
Q 018241 193 DQIEKRMEKLKKGK--AKDSQSKLKEDAEKAALEKIQQALMDGK 234 (359)
Q Consensus 193 ~~l~~~~~~~~~~~--~~~~~Sa~~~~~~~~ll~~i~~~L~~~~ 234 (359)
... .+.... ....+||+.+.++.++++.+.+.+.+..
T Consensus 139 -~~~----~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~~~ 177 (218)
T 4djt_A 139 -LVM----EVLKGKNYEYFEISAKTAHNFGLPFLHLARIFTGRP 177 (218)
T ss_dssp -HHH----HHTTTCCCEEEEEBTTTTBTTTHHHHHHHHHHHCCT
T ss_pred -HHH----HHHHHcCCcEEEEecCCCCCHHHHHHHHHHHHhccc
Confidence 111 111111 1157899999999999999999987644
No 141
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.45 E-value=1.6e-13 Score=130.89 Aligned_cols=141 Identities=19% Similarity=0.186 Sum_probs=91.4
Q ss_pred CCcEEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCCcCC
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~~~ 134 (359)
..++|+|+|.+|||||||+|+|++..... .. .|+......+... ...+.||||||....
T Consensus 164 ~~~kI~ivG~~~vGKSsLl~~l~~~~~~~--~~--pT~~~~~~~~~~~-----------------~~~l~i~Dt~G~~~~ 222 (329)
T 3o47_A 164 KEMRILMVGLDAAGKTTILYKLKLGEIVT--TI--PTIGFNVETVEYK-----------------NISFTVWDVGGQDKI 222 (329)
T ss_dssp CSEEEEEEESTTSSHHHHHHHTCSSCCEE--EE--EETTEEEEEEEET-----------------TEEEEEEECC-----
T ss_pred CcceEEEECCCCccHHHHHHHHhCCCCCC--cc--cccceEEEEEecC-----------------cEEEEEEECCCCHhH
Confidence 34699999999999999999999655322 22 2555555555443 367999999997544
Q ss_pred CCcCcchhhhHhhHHHhcccceEEeecCC---------------------CccEEEeCCcccCCcch--HHHHhhhhhcc
Q 018241 135 ASQGEGLGNKFLSHIREVDSILQVVRCFE---------------------DNDIVHVNGKVDPKSDV--DVINLELVFSD 191 (359)
Q Consensus 135 ~~~~~~~~~~~l~~i~~aD~il~Vvd~~~---------------------~~~v~~v~nk~d~~~~~--~~i~~el~~~d 191 (359)
.. .....++.+|++++|+|+++ +.+++.+.||+|...+. ..+..++....
T Consensus 223 ~~-------~~~~~~~~ad~vilV~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~~~i~~~~~~~~ 295 (329)
T 3o47_A 223 RP-------LWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHS 295 (329)
T ss_dssp CC-------SHHHHHTTEEEEEEEEETTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTCTT
T ss_pred HH-------HHHHHhccCCEEEEEEECCchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCCcccCHHHHHHHhchhh
Confidence 33 34556788999999999976 23578999999976432 12211111100
Q ss_pred HHHHHHHHHHHhhhccccccchhhHHHHHHHHHHHHHHhcC
Q 018241 192 LDQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMD 232 (359)
Q Consensus 192 ~~~l~~~~~~~~~~~~~~~~Sa~~~~~~~~ll~~i~~~L~~ 232 (359)
.. ........+||+.+.++.++++.+.+.+.+
T Consensus 296 ~~---------~~~~~~~~vSAk~g~gi~el~~~l~~~l~~ 327 (329)
T 3o47_A 296 LR---------HRNWYIQATCATSGDGLYEGLDWLSNQLRN 327 (329)
T ss_dssp CC---------SSCEEEEECBTTTTBTHHHHHHHHHHHHTC
T ss_pred hh---------cCCCEEEEEECCCCcCHHHHHHHHHHHHHh
Confidence 00 000011468999999999999999988854
No 142
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.44 E-value=3.8e-13 Score=123.97 Aligned_cols=87 Identities=22% Similarity=0.311 Sum_probs=69.0
Q ss_pred CCcEEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCCcCC
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~~~ 134 (359)
..++|+++|.+|||||||+|+|++...+.+++++++|.+.....+.+.+ ..+.+|||||+.++
T Consensus 35 ~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~-----------------~~l~liDTpG~~~~ 97 (262)
T 3def_A 35 NSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGG-----------------FTINIIDTPGLVEA 97 (262)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEEEEETT-----------------EEEEEEECCCSEET
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEEEEEECC-----------------eeEEEEECCCCCCc
Confidence 4589999999999999999999988777888999999888887777653 57999999999876
Q ss_pred CCcCcchhhhHhhHHH------hcccceEEeecC
Q 018241 135 ASQGEGLGNKFLSHIR------EVDSILQVVRCF 162 (359)
Q Consensus 135 ~~~~~~~~~~~l~~i~------~aD~il~Vvd~~ 162 (359)
.... ..+...+. .+|++++|+|..
T Consensus 98 ~~~~----~~~~~~i~~~l~~~~~~~il~V~~~d 127 (262)
T 3def_A 98 GYVN----HQALELIKGFLVNRTIDVLLYVDRLD 127 (262)
T ss_dssp TEEC----HHHHHHHHHHTTTCEECEEEEEEESS
T ss_pred ccch----HHHHHHHHHHHhcCCCCEEEEEEcCC
Confidence 5432 23444443 789999997764
No 143
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=99.44 E-value=1.2e-13 Score=123.47 Aligned_cols=146 Identities=18% Similarity=0.113 Sum_probs=91.1
Q ss_pred CCcEEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCCcCC
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~~~ 134 (359)
..+||+|||.||||||||+|++++.....+..++.++.+.....+.+++. ..++.+|||+|....
T Consensus 36 ~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~~~~g~d~~~~~i~~~~~---------------~~~l~~~Dt~g~~~~ 100 (211)
T 2g3y_A 36 TYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGE---------------SATIILLDMWENKGE 100 (211)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTE---------------EEEEEEECCTTTTHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCCCCcCCccceeeEEEEEEECCe---------------eeEEEEeecCCCcch
Confidence 34799999999999999999999655544555565555544455555432 245789999996421
Q ss_pred CCcCcchhhhHhhHHHhcccceEEeecCC---------------------CccEEEeCCcccCCcchHHHHhhhhhccHH
Q 018241 135 ASQGEGLGNKFLSHIREVDSILQVVRCFE---------------------DNDIVHVNGKVDPKSDVDVINLELVFSDLD 193 (359)
Q Consensus 135 ~~~~~~~~~~~l~~i~~aD~il~Vvd~~~---------------------~~~v~~v~nk~d~~~~~~~i~~el~~~d~~ 193 (359)
...+ .....+.+|++++|+|.++ +.+++.+.||+|...+... . .+
T Consensus 101 ---~~~l---~~~~~~~a~~~ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~r~v-~-------~~ 166 (211)
T 2g3y_A 101 ---NEWL---HDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREV-S-------VS 166 (211)
T ss_dssp ---HHHH---HHCCCCCCSEEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGGCCS-C-------HH
T ss_pred ---hhhH---HHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEChHHhcCceE-e-------HH
Confidence 0001 1223467899999999865 2368899999997532111 0 01
Q ss_pred HHHHHHHHHhhhccccccchhhHHHHHHHHHHHHHHhc
Q 018241 194 QIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALM 231 (359)
Q Consensus 194 ~l~~~~~~~~~~~~~~~~Sa~~~~~~~~ll~~i~~~L~ 231 (359)
.. ..+..... .....+||+.+.++.++++.+.+.+.
T Consensus 167 e~-~~~a~~~~-~~~~e~SAk~g~~v~elf~~l~~~i~ 202 (211)
T 2g3y_A 167 EG-RACAVVFD-CKFIETSAAVQHNVKELFEGIVRQVR 202 (211)
T ss_dssp HH-HHHHHHHT-CEEEECBTTTTBSHHHHHHHHHHHHH
T ss_pred HH-HHHHHHcC-CEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 10 11111111 11246799999999999998887763
No 144
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=99.44 E-value=1.7e-13 Score=135.73 Aligned_cols=99 Identities=13% Similarity=0.111 Sum_probs=72.2
Q ss_pred CCcEEEEEecCCCChhHHHHHHHhccccccCC------------------------------CCceeccceeEEEEeCCC
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAAN------------------------------FPFCTIEPNVGIVAVPDP 104 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~------------------------------~p~tT~~~~~g~~~~~~~ 104 (359)
..++|+++|++|+|||||+|+|++........ .++.|++.....+..+
T Consensus 16 ~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~~-- 93 (439)
T 3j2k_7 16 EHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFETE-- 93 (439)
T ss_pred ceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEecC--
Confidence 45899999999999999999997543222111 2456666555555444
Q ss_pred ccchhccccccccccCceEEEEecCCCcCCCCcCcchhhhHhhHHHhcccceEEeecCCCc-------------------
Q 018241 105 RLHVLSGLSKSQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDN------------------- 165 (359)
Q Consensus 105 r~~~l~~~~~~~~~~~~~i~lvDtpG~~~~~~~~~~~~~~~l~~i~~aD~il~Vvd~~~~~------------------- 165 (359)
+.++.||||||..++. ......++.||++++|||+.+..
T Consensus 94 ---------------~~~~~iiDTPGh~~f~-------~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~ 151 (439)
T 3j2k_7 94 ---------------KKHFTILDAPGHKSFV-------PNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAK 151 (439)
T ss_pred ---------------CeEEEEEECCChHHHH-------HHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHH
Confidence 3579999999986442 35667788999999999997631
Q ss_pred ----c-EEEeCCcccCC
Q 018241 166 ----D-IVHVNGKVDPK 177 (359)
Q Consensus 166 ----~-v~~v~nk~d~~ 177 (359)
+ ++.+.||+|..
T Consensus 152 ~~~v~~iIvviNK~Dl~ 168 (439)
T 3j2k_7 152 TAGVKHLIVLINKMDDP 168 (439)
T ss_pred HcCCCeEEEEeecCCCc
Confidence 2 77899999975
No 145
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=99.42 E-value=6.1e-14 Score=123.11 Aligned_cols=147 Identities=20% Similarity=0.192 Sum_probs=63.6
Q ss_pred CCcEEEEEecCCCChhHHHHHHHhccccccCCCCcee-ccceeEEEEeCCCccchhccccccccccCceEEEEecCCCcC
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCT-IEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVK 133 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT-~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~~ 133 (359)
..++|+++|.+|||||||+|+|++......+.++.|+ .+.....+.+++.. ....+.+|||||..+
T Consensus 19 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~-------------~~~~~~l~Dt~G~~~ 85 (208)
T 2yc2_C 19 LRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTT-------------VSVELFLLDTAGSDL 85 (208)
T ss_dssp EEEEEEEC----------------------------------CEEEECTTSS-------------EEEEEEEEETTTTHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcc-------------cEEEEEEEECCCcHH
Confidence 3479999999999999999999965322233444444 24455555554320 014699999999853
Q ss_pred CCCcCcchhhhHhhHHHhcccceEEeecCC-----------------------CccEEEeCCcccCCc-chHHHHhhhhh
Q 018241 134 GASQGEGLGNKFLSHIREVDSILQVVRCFE-----------------------DNDIVHVNGKVDPKS-DVDVINLELVF 189 (359)
Q Consensus 134 ~~~~~~~~~~~~l~~i~~aD~il~Vvd~~~-----------------------~~~v~~v~nk~d~~~-~~~~i~~el~~ 189 (359)
.. ......++.+|++++|+|+++ +.+++.+.||+|... +...
T Consensus 86 ~~-------~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~v------- 151 (208)
T 2yc2_C 86 YK-------EQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPPQRHQV------- 151 (208)
T ss_dssp HH-------HHHSTTCCCCCEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC-------CC-------
T ss_pred HH-------HHHHHHHhhCcEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccchhhccC-------
Confidence 22 234556688999999999866 225788999999764 2111
Q ss_pred ccHHHHHHHHHHHhhhccccccchhh-HHHHHHHHHHHHHHhc
Q 018241 190 SDLDQIEKRMEKLKKGKAKDSQSKLK-EDAEKAALEKIQQALM 231 (359)
Q Consensus 190 ~d~~~l~~~~~~~~~~~~~~~~Sa~~-~~~~~~ll~~i~~~L~ 231 (359)
..+.+........ .....+||+. +.++.++++.+.+.+.
T Consensus 152 -~~~~~~~~~~~~~--~~~~~~Sa~~~~~gi~~l~~~i~~~~~ 191 (208)
T 2yc2_C 152 -RLDMAQDWATTNT--LDFFDVSANPPGKDADAPFLSIATTFY 191 (208)
T ss_dssp -CHHHHHHHHHHTT--CEEEECCC-------CHHHHHHHHHHH
T ss_pred -CHHHHHHHHHHcC--CEEEEeccCCCCcCHHHHHHHHHHHHH
Confidence 0111122111111 1125689999 9999999998888774
No 146
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.42 E-value=7.8e-13 Score=117.13 Aligned_cols=101 Identities=18% Similarity=0.150 Sum_probs=69.1
Q ss_pred CCcEEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCCcCC
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~~~ 134 (359)
..++|+++|.+|||||||+|+|++.... ..++.++ .....+.+++.+ ...+.+|||||..+.
T Consensus 6 ~~~ki~vvG~~~~GKTsli~~l~~~~~~--~~~~~~~--~~~~~~~~~~~~--------------~~~~~i~Dt~G~~~~ 67 (214)
T 2fh5_B 6 SQRAVLFVGLCDSGKTLLFVRLLTGQYR--DTQTSIT--DSSAIYKVNNNR--------------GNSLTLIDLPGHESL 67 (214)
T ss_dssp --CEEEEECSTTSSHHHHHHHHHHSCCC--CBCCCCS--CEEEEEECSSTT--------------CCEEEEEECCCCHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcc--cccCCcc--eeeEEEEecCCC--------------ccEEEEEECCCChhH
Confidence 4589999999999999999999965532 3344333 333335554321 357999999998532
Q ss_pred CCcCcchhhhHhhHHHhcccceEEeecCC------------------------CccEEEeCCcccCCcc
Q 018241 135 ASQGEGLGNKFLSHIREVDSILQVVRCFE------------------------DNDIVHVNGKVDPKSD 179 (359)
Q Consensus 135 ~~~~~~~~~~~l~~i~~aD~il~Vvd~~~------------------------~~~v~~v~nk~d~~~~ 179 (359)
.. ......++.+|++++|+|+++ +.+++.+.||+|....
T Consensus 68 ~~------~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 130 (214)
T 2fh5_B 68 RF------QLLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMA 130 (214)
T ss_dssp HH------HHHHHHGGGEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTC
T ss_pred HH------HHHHHHHhhCCEEEEEEECCCcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCc
Confidence 21 012334688999999999866 1367889999997643
No 147
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=99.42 E-value=7.1e-13 Score=115.23 Aligned_cols=140 Identities=17% Similarity=0.100 Sum_probs=87.8
Q ss_pred CCcEEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCCcCC
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~~~ 134 (359)
..+||+|+|.+|||||||+|+++++.... ...| |.......+.+.+. ...+.+|||||....
T Consensus 19 ~~~ki~ivG~~~vGKSsL~~~~~~~~~~~-~~~~--t~~~~~~~~~~~~~---------------~~~l~i~Dt~G~~~~ 80 (184)
T 3ihw_A 19 PELKVGIVGNLSSGKSALVHRYLTGTYVQ-EESP--EGGRFKKEIVVDGQ---------------SYLLLIRDEGGPPEL 80 (184)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHHHSSCCC-CCCT--TCEEEEEEEEETTE---------------EEEEEEEECSSSCCH
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcCCCCC-CcCC--CcceEEEEEEECCE---------------EEEEEEEECCCChhh
Confidence 44899999999999999999999654432 1112 22222234444431 246788999998422
Q ss_pred CCcCcchhhhHhhHHHhcccceEEeecCC---------------------CccEEEeCCcccCCcchHHHHhhhhhccHH
Q 018241 135 ASQGEGLGNKFLSHIREVDSILQVVRCFE---------------------DNDIVHVNGKVDPKSDVDVINLELVFSDLD 193 (359)
Q Consensus 135 ~~~~~~~~~~~l~~i~~aD~il~Vvd~~~---------------------~~~v~~v~nk~d~~~~~~~i~~el~~~d~~ 193 (359)
. .++.+|++++|+|+++ +.+++.+.||+|...+... ....+
T Consensus 81 ~------------~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~------~v~~~ 142 (184)
T 3ihw_A 81 Q------------FAAWVDAVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAISAANPR------VIDDS 142 (184)
T ss_dssp H------------HHHHCSEEEEEEETTCHHHHHHHHHHHHHHHTTSCGGGSCEEEEEECTTCBTTBCC------CSCHH
T ss_pred h------------eecCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccccc------ccCHH
Confidence 1 6688999999999876 2357889999996421100 01111
Q ss_pred HHHHHHHHHhhhccccccchhhHHHHHHHHHHHHHHhc
Q 018241 194 QIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALM 231 (359)
Q Consensus 194 ~l~~~~~~~~~~~~~~~~Sa~~~~~~~~ll~~i~~~L~ 231 (359)
........... .....+||+.+.++.++++.+.+.+.
T Consensus 143 ~~~~~~~~~~~-~~~~e~Sa~~~~gv~~lf~~l~~~i~ 179 (184)
T 3ihw_A 143 RARKLSTDLKR-CTYYETCATYGLNVERVFQDVAQKVV 179 (184)
T ss_dssp HHHHHHHHTTT-CEEEEEBTTTTBTHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCC-CeEEEecCCCCCCHHHHHHHHHHHHH
Confidence 12222222211 11146899999999999998887763
No 148
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.40 E-value=5.4e-13 Score=125.92 Aligned_cols=155 Identities=19% Similarity=0.164 Sum_probs=98.2
Q ss_pred cccCCcEEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCC
Q 018241 52 KISMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGL 131 (359)
Q Consensus 52 ~~~~~~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~ 131 (359)
.....++|+++|.+|||||||+|+++++.. ...++.||.+.....+.+.+. ...+.+|||||.
T Consensus 151 ~~~~~~~i~i~G~~~~GKssli~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~---------------~~~~~l~Dt~G~ 213 (332)
T 2wkq_A 151 AAKELIKCVVVGDGAVGKTCLLISYTTNAF--PGEYIPTVFDNYSANVMVDGK---------------PVNLGLWDTAGL 213 (332)
T ss_dssp HHTTCEEEEEEESTTSSHHHHHHHHHHSCC--CCSCCCCSEEEEEEEEEETTE---------------EEEEEEEEECCC
T ss_pred cccceeEEEEECCCCCChHHHHHHHHhCCC--CcccCCcccceeEEEEEECCE---------------EEEEEEEeCCCc
Confidence 345668999999999999999999995543 334555665555444444321 245779999998
Q ss_pred cCCCCcCcchhhhHhhHHHhcccceEEeecCC--------------------CccEEEeCCcccCCcchHHHHh--hh--
Q 018241 132 VKGASQGEGLGNKFLSHIREVDSILQVVRCFE--------------------DNDIVHVNGKVDPKSDVDVINL--EL-- 187 (359)
Q Consensus 132 ~~~~~~~~~~~~~~l~~i~~aD~il~Vvd~~~--------------------~~~v~~v~nk~d~~~~~~~i~~--el-- 187 (359)
..... .....++.+|++++|+|+++ +.+++.+.||+|...+...... +.
T Consensus 214 ~~~~~-------~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~ 286 (332)
T 2wkq_A 214 EDYDR-------LRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKL 286 (332)
T ss_dssp GGGTT-------TGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTSCEEEEEECHHHHTCHHHHHHHHHTTC
T ss_pred hhhhH-------HHHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhCCCCcEEEEEEchhcccccchhhhcccccc
Confidence 65433 33445678999999999876 2467899999997654322111 00
Q ss_pred hhccHHHHHHHHHHHhhhccccccchhhHHHHHHHHHHHHHHhc
Q 018241 188 VFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALM 231 (359)
Q Consensus 188 ~~~d~~~l~~~~~~~~~~~~~~~~Sa~~~~~~~~ll~~i~~~L~ 231 (359)
.....+.......... ......+||+.+.++.++++.+.+.+.
T Consensus 287 ~~v~~~~~~~~~~~~~-~~~~~~~Sa~~~~gi~~l~~~l~~~~~ 329 (332)
T 2wkq_A 287 TPITYPQGLAMAKEIG-AVKYLECSALTQRGLKTVFDEAIRAVL 329 (332)
T ss_dssp CCCCHHHHHHHHHHTT-CSEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHcC-CcEEEEecCCCCcCHHHHHHHHHHHHh
Confidence 0111111122111111 111146799999999999998887764
No 149
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=99.11 E-value=2.2e-14 Score=126.37 Aligned_cols=150 Identities=19% Similarity=0.167 Sum_probs=86.2
Q ss_pred CCcEEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCCcCC
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~~~ 134 (359)
..++|+++|.+|||||||+|+|+++... ..+..++.+.....+.+.+. ...+.+|||||..+.
T Consensus 29 ~~~ki~v~G~~~~GKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~---------------~~~l~i~Dt~G~~~~ 91 (204)
T 3th5_A 29 QAIKCVVVGDGAVGKTCLLISYTTNAFP--GEYIPTVFDNYSANVMVDGK---------------PVNLGLWDTAGQEDY 91 (204)
Confidence 4589999999999999999999954432 23333443333333322211 245779999998654
Q ss_pred CCcCcchhhhHhhHHHhcccceEEeecCCC--------------------ccEEEeCCcccCCcchHHHHh--hhhhcc-
Q 018241 135 ASQGEGLGNKFLSHIREVDSILQVVRCFED--------------------NDIVHVNGKVDPKSDVDVINL--ELVFSD- 191 (359)
Q Consensus 135 ~~~~~~~~~~~l~~i~~aD~il~Vvd~~~~--------------------~~v~~v~nk~d~~~~~~~i~~--el~~~d- 191 (359)
.. .....++++|++++|+|+++. .+++.+.||+|...+...... +.....
T Consensus 92 ~~-------~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~v 164 (204)
T 3th5_A 92 DR-------LRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPI 164 (204)
Confidence 33 333456889999999997652 245678888887643211110 000000
Q ss_pred -HHHHHHHHHHHhhhccccccchhhHHHHHHHHHHHHHH
Q 018241 192 -LDQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQA 229 (359)
Q Consensus 192 -~~~l~~~~~~~~~~~~~~~~Sa~~~~~~~~ll~~i~~~ 229 (359)
.+.......... ......+||+++.++.++++.+.+.
T Consensus 165 ~~~~~~~~~~~~~-~~~~~~vSA~~g~gi~~l~~~l~~~ 202 (204)
T 3th5_A 165 TYPQGLAMAKEIG-AVKYLECSALTQRGLKTVFDEAIRA 202 (204)
Confidence 000000000000 0011457888888888888776554
No 150
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=99.40 E-value=1.3e-14 Score=146.44 Aligned_cols=148 Identities=20% Similarity=0.136 Sum_probs=99.0
Q ss_pred CCcEEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCCcCC
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~~~ 134 (359)
++++|+++|++|+|||||+|+|++... .....|++|.+.....+..++ +..+.||||||...+
T Consensus 3 r~pkV~IvG~~~vGKTSLl~~L~~~~~-~~~~~~giT~~i~~~~v~~~~----------------g~~i~~iDTPGhe~f 65 (537)
T 3izy_P 3 RSPVVTIMGHVDHGKTTLLDKLRKTQV-AAMEAGGITQHIGAFLVSLPS----------------GEKITFLDTPGHAAF 65 (537)
T ss_dssp CCCBCEEEESTTTTHHHHHHHHHHHHH-HHSSSCCBCCCTTSCCBCSSC----------------SSCCBCEECSSSCCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCc-ccccCCceeEEEeEEEEEeCC----------------CCEEEEEECCChHHH
Confidence 568999999999999999999995544 344678888777665554432 346899999998655
Q ss_pred CCcCcchhhhHhhHHHhcccceEEeecCCC----------------ccEEEeCCcccCCcc-hHHHHhhhhhccHHHHHH
Q 018241 135 ASQGEGLGNKFLSHIREVDSILQVVRCFED----------------NDIVHVNGKVDPKSD-VDVINLELVFSDLDQIEK 197 (359)
Q Consensus 135 ~~~~~~~~~~~l~~i~~aD~il~Vvd~~~~----------------~~v~~v~nk~d~~~~-~~~i~~el~~~d~~~l~~ 197 (359)
.. .....++.+|++++|+|+.+. .+++.+.||+|.... ...+..++...+.
T Consensus 66 ~~-------~~~~~~~~aD~vILVVDa~dg~~~qt~e~l~~~~~~~vPiIVViNKiDl~~~~~~~v~~~l~~~~~----- 133 (537)
T 3izy_P 66 SA-------MRARGTQVTDIVILVVAADDGVMKQTVESIQHAKDAHVPIVLAINKCDKAEADPEKVKKELLAYDV----- 133 (537)
T ss_dssp TT-------SBBSSSBSBSSCEEECBSSSCCCHHHHHHHHHHHTTTCCEEECCBSGGGTTTSCCSSSSHHHHTTS-----
T ss_pred HH-------HHHHHHccCCEEEEEEECCCCccHHHHHHHHHHHHcCCcEEEEEecccccccchHHHHHHHHhhhh-----
Confidence 44 223445779999999999873 368899999996531 1111111100000
Q ss_pred HHHHHhhhccccccchhhHHHHHHHHHHHHHHhc
Q 018241 198 RMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALM 231 (359)
Q Consensus 198 ~~~~~~~~~~~~~~Sa~~~~~~~~ll~~i~~~L~ 231 (359)
....+.......++||+++.++.++++.+...++
T Consensus 134 ~~e~~~~~~~iv~vSAktG~GI~eLle~I~~l~~ 167 (537)
T 3izy_P 134 VCEDYGGDVQAVHVSALTGENMMALAEATIALAE 167 (537)
T ss_dssp CCCCSSSSEEECCCCSSSSCSSHHHHHHHHHHHT
T ss_pred hHHhcCCCceEEEEECCCCCCchhHHHHHHHhhh
Confidence 0000000011257899999999999999988874
No 151
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=99.40 E-value=5.9e-13 Score=130.36 Aligned_cols=162 Identities=21% Similarity=0.226 Sum_probs=94.9
Q ss_pred cCCcEEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEE-eCCCccchhccc-----cccccccCceEEEEe
Q 018241 54 SMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVA-VPDPRLHVLSGL-----SKSQKAVPASVEFVD 127 (359)
Q Consensus 54 ~~~~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~-~~~~r~~~l~~~-----~~~~~~~~~~i~lvD 127 (359)
...++|+++|++|+|||||+|+|++........++.+|. +... ....+....... +.........+.|||
T Consensus 6 ~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiD 81 (403)
T 3sjy_A 6 QPEVNIGVVGHVDHGKTTLVQAITGIWTSKKLGYAETNI----GVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFID 81 (403)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHSCCCCSSSEEEEEEE----EECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCcccccccCccccce----eeccccccccceecccccccccccccccccceEEEEE
Confidence 356899999999999999999999644333223332221 1100 000000000000 000011125799999
Q ss_pred cCCCcCCCCcCcchhhhHhhHHHhcccceEEeecCCCc------------------cEEEeCCcccCCcchHHHHhhhhh
Q 018241 128 IAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDN------------------DIVHVNGKVDPKSDVDVINLELVF 189 (359)
Q Consensus 128 tpG~~~~~~~~~~~~~~~l~~i~~aD~il~Vvd~~~~~------------------~v~~v~nk~d~~~~~~~i~~el~~ 189 (359)
|||..+ +.......++.+|++++|+|+.+.. +++.+.||+|....... ..
T Consensus 82 tPGh~~-------~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~~~~~-~~---- 149 (403)
T 3sjy_A 82 APGHEV-------LMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIGVKNLIIVQNKVDVVSKEEA-LS---- 149 (403)
T ss_dssp CCCCGG-------GHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHHTCCCEEEEEECGGGSCHHHH-HH----
T ss_pred CCCcHH-------HHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHcCCCCEEEEEECccccchHHH-HH----
Confidence 999643 3346677889999999999998742 57889999998743211 11
Q ss_pred ccHHHHHHHHHHHh-hhccccccchhhHHHHHHHHHHHHHHhcC
Q 018241 190 SDLDQIEKRMEKLK-KGKAKDSQSKLKEDAEKAALEKIQQALMD 232 (359)
Q Consensus 190 ~d~~~l~~~~~~~~-~~~~~~~~Sa~~~~~~~~ll~~i~~~L~~ 232 (359)
..+.+.+.+.... .......+||+.+.++.++++.+.+.++.
T Consensus 150 -~~~~i~~~l~~~~~~~~~ii~vSA~~g~gi~~L~~~l~~~l~~ 192 (403)
T 3sjy_A 150 -QYRQIKQFTKGTWAENVPIIPVSALHKINIDSLIEGIEEYIKT 192 (403)
T ss_dssp -HHHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSCC
T ss_pred -HHHHHHHHHHhhCCCCCEEEEEECCCCcChHHHHHHHHHhCCC
Confidence 0011111111000 01112578999999999999999988854
No 152
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=99.40 E-value=1.2e-12 Score=120.97 Aligned_cols=91 Identities=22% Similarity=0.226 Sum_probs=66.8
Q ss_pred CCcEEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCCcCC
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~~~ 134 (359)
..++|+++|.+|+|||||+|+|++.....+++.+++|.++....+... +..+.+|||||+.+.
T Consensus 38 ~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~-----------------~~~l~iiDTpG~~~~ 100 (270)
T 1h65_A 38 NSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRA-----------------GFTLNIIDTPGLIEG 100 (270)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEET-----------------TEEEEEEECCCSEET
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeeEEEEEeeC-----------------CeEEEEEECCCCCCC
Confidence 358999999999999999999998777778889999987776655544 357999999999765
Q ss_pred CCcCcchhhhHhhH--HHhcccceEEeecC
Q 018241 135 ASQGEGLGNKFLSH--IREVDSILQVVRCF 162 (359)
Q Consensus 135 ~~~~~~~~~~~l~~--i~~aD~il~Vvd~~ 162 (359)
..........+... .+.+|++++|+|+.
T Consensus 101 ~~~~~~~~~~i~~~~~~~~~d~il~v~~~d 130 (270)
T 1h65_A 101 GYINDMALNIIKSFLLDKTIDVLLYVDRLD 130 (270)
T ss_dssp TEECHHHHHHHHHHTTTCEECEEEEEEESS
T ss_pred ccchHHHHHHHHHHhhcCCCCEEEEEEeCC
Confidence 43222111111111 23799999997763
No 153
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=99.39 E-value=2.5e-13 Score=139.68 Aligned_cols=101 Identities=18% Similarity=0.191 Sum_probs=75.8
Q ss_pred cCCcEEEEEecCCCChhHHHHHHHhccccccCC------------------------------CCceeccceeEEEEeCC
Q 018241 54 SMSLRAGIVGLPNVGKSTLFNAVVENGKAQAAN------------------------------FPFCTIEPNVGIVAVPD 103 (359)
Q Consensus 54 ~~~~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~------------------------------~p~tT~~~~~g~~~~~~ 103 (359)
...++|+++|++|+|||||+|+|++........ .+|+|++.....+..+
T Consensus 165 k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~- 243 (611)
T 3izq_1 165 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTH- 243 (611)
T ss_dssp CCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECS-
T ss_pred CCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecC-
Confidence 346899999999999999999999543322111 2567777766666554
Q ss_pred CccchhccccccccccCceEEEEecCCCcCCCCcCcchhhhHhhHHHhcccceEEeecCCC-------------------
Q 018241 104 PRLHVLSGLSKSQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFED------------------- 164 (359)
Q Consensus 104 ~r~~~l~~~~~~~~~~~~~i~lvDtpG~~~~~~~~~~~~~~~l~~i~~aD~il~Vvd~~~~------------------- 164 (359)
..++.||||||+.+ +...+...++.||++|+|||+++.
T Consensus 244 ----------------~~~~~iiDTPG~e~-------f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~ 300 (611)
T 3izq_1 244 ----------------RANFTIVDAPGHRD-------FVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLA 300 (611)
T ss_dssp ----------------SCEEEEEECCSSSC-------HHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHH
T ss_pred ----------------CceEEEEECCCCcc-------cHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHH
Confidence 35799999999854 334667778899999999999752
Q ss_pred -----ccEEEeCCcccCCc
Q 018241 165 -----NDIVHVNGKVDPKS 178 (359)
Q Consensus 165 -----~~v~~v~nk~d~~~ 178 (359)
.+++.+.||+|...
T Consensus 301 ~~lgi~~iIVVvNKiDl~~ 319 (611)
T 3izq_1 301 SSLGIHNLIIAMNKMDNVD 319 (611)
T ss_dssp HTTTCCEEEEEEECTTTTT
T ss_pred HHcCCCeEEEEEecccccc
Confidence 23788999999775
No 154
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=99.39 E-value=7.8e-13 Score=129.54 Aligned_cols=149 Identities=17% Similarity=0.141 Sum_probs=93.3
Q ss_pred CCcEEEEEecCCCChhHHHHHHHhcc--cc---ccC-----------CCCceeccceeEEEEeCCCccchhccccccccc
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVVENG--KA---QAA-----------NFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKA 118 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~~~~--~~---~~~-----------~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~ 118 (359)
..++|+++|++|+|||||+|+|++.. .. ... ..++.|++.....+...
T Consensus 10 ~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~---------------- 73 (405)
T 2c78_A 10 PHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETA---------------- 73 (405)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECS----------------
T ss_pred CeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccC----------------
Confidence 34799999999999999999999631 10 000 02344554433323222
Q ss_pred cCceEEEEecCCCcCCCCcCcchhhhHhhHHHhcccceEEeecCCC----------------cc-EEEeCCcccCCcchH
Q 018241 119 VPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFED----------------ND-IVHVNGKVDPKSDVD 181 (359)
Q Consensus 119 ~~~~i~lvDtpG~~~~~~~~~~~~~~~l~~i~~aD~il~Vvd~~~~----------------~~-v~~v~nk~d~~~~~~ 181 (359)
..++.||||||+.++ .......++.+|++++|+|+.+. .+ ++.+.||+|...+.+
T Consensus 74 -~~~~~iiDtpG~~~f-------~~~~~~~~~~aD~~ilVvda~~g~~~qt~~~l~~~~~~~ip~iivviNK~Dl~~~~~ 145 (405)
T 2c78_A 74 -KRHYSHVDCPGHADY-------IKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFMNKVDMVDDPE 145 (405)
T ss_dssp -SCEEEEEECCCSGGG-------HHHHHHHHTTCSSEEEEEETTTCCCHHHHHHHHHHHHTTCCCEEEEEECGGGCCCHH
T ss_pred -CeEEEEEECCChHHH-------HHHHHHHHHHCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEECccccCcHH
Confidence 357999999998653 23566778899999999999873 24 678999999874322
Q ss_pred HHHhhhhhccHHHHHHHHHHHhh---hccccccchhhHHH------------------HHHHHHHHHHHhcC
Q 018241 182 VINLELVFSDLDQIEKRMEKLKK---GKAKDSQSKLKEDA------------------EKAALEKIQQALMD 232 (359)
Q Consensus 182 ~i~~el~~~d~~~l~~~~~~~~~---~~~~~~~Sa~~~~~------------------~~~ll~~i~~~L~~ 232 (359)
.++. + . +.+...+..+.- ......+||+.+.+ +.++++.+.++++.
T Consensus 146 ~~~~-~-~---~~~~~~l~~~~~~~~~~~~i~~SA~~g~~v~~~~~~~~~~~~~~~~~i~~Ll~~l~~~lp~ 212 (405)
T 2c78_A 146 LLDL-V-E---MEVRDLLNQYEFPGDEVPVIRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEYIPT 212 (405)
T ss_dssp HHHH-H-H---HHHHHHHHHTTSCTTTSCEEECCHHHHHHHHHHCTTCCTTSCHHHHHHHHHHHHHHHHSCC
T ss_pred HHHH-H-H---HHHHHHHHHhcccccCCCEEEccHHHhhhhhccccccccCCCcccccHHHHHHHHHhhcCC
Confidence 2111 0 0 011222222110 11125679999887 67888888887753
No 155
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=99.38 E-value=4.9e-13 Score=133.98 Aligned_cols=101 Identities=18% Similarity=0.174 Sum_probs=72.5
Q ss_pred cCCcEEEEEecCCCChhHHHHHHHhcccc------------------------------ccCCCCceeccceeEEEEeCC
Q 018241 54 SMSLRAGIVGLPNVGKSTLFNAVVENGKA------------------------------QAANFPFCTIEPNVGIVAVPD 103 (359)
Q Consensus 54 ~~~~~i~ivG~pn~GKSTL~n~L~~~~~~------------------------------~~~~~p~tT~~~~~g~~~~~~ 103 (359)
...++|+++|.+|+|||||+|+|++.... .....+|+|++.....+..+
T Consensus 31 k~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~- 109 (483)
T 3p26_A 31 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTH- 109 (483)
T ss_dssp CCEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECS-
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecC-
Confidence 34589999999999999999999854211 11223455655555544433
Q ss_pred CccchhccccccccccCceEEEEecCCCcCCCCcCcchhhhHhhHHHhcccceEEeecCCC-------------------
Q 018241 104 PRLHVLSGLSKSQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFED------------------- 164 (359)
Q Consensus 104 ~r~~~l~~~~~~~~~~~~~i~lvDtpG~~~~~~~~~~~~~~~l~~i~~aD~il~Vvd~~~~------------------- 164 (359)
..++.||||||+.++ .......++.+|++++|+|+.+.
T Consensus 110 ----------------~~~~~iiDTPG~~~f-------~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~ 166 (483)
T 3p26_A 110 ----------------RANFTIVDAPGHRDF-------VPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLA 166 (483)
T ss_dssp ----------------SCEEEEECCCCCGGG-------HHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHH
T ss_pred ----------------CceEEEEECCCcHHH-------HHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHH
Confidence 367999999999543 34667788999999999999763
Q ss_pred -----ccEEEeCCcccCCc
Q 018241 165 -----NDIVHVNGKVDPKS 178 (359)
Q Consensus 165 -----~~v~~v~nk~d~~~ 178 (359)
.+++.+.||+|...
T Consensus 167 ~~~~~~~iIvviNK~Dl~~ 185 (483)
T 3p26_A 167 SSLGIHNLIIAMNKMDNVD 185 (483)
T ss_dssp HHTTCCCEEEEEECGGGGT
T ss_pred HHcCCCcEEEEEECcCccc
Confidence 24788999999764
No 156
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=99.38 E-value=1.3e-13 Score=143.76 Aligned_cols=194 Identities=16% Similarity=0.154 Sum_probs=117.9
Q ss_pred CCcEEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCCC-----------cc---chh-----------
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDP-----------RL---HVL----------- 109 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~~-----------r~---~~l----------- 109 (359)
..++|++||.+|+|||||+|+|+|....+.+.- .||+.|..-.+..... ++ +.+
T Consensus 50 ~lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g-~~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~~ 128 (772)
T 3zvr_A 50 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSG-IVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV 128 (772)
T ss_dssp CCSEEEEEECTTTCHHHHHHHHHSSCCSCCSSS-CSCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCccCcCCc-cccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhhh
Confidence 558999999999999999999997655444443 4777665444332211 00 000
Q ss_pred cc-------------ccccccccCceEEEEecCCCcCCCCc--C----cchhhhHhhHH-HhcccceEEeecCCC-----
Q 018241 110 SG-------------LSKSQKAVPASVEFVDIAGLVKGASQ--G----EGLGNKFLSHI-REVDSILQVVRCFED----- 164 (359)
Q Consensus 110 ~~-------------~~~~~~~~~~~i~lvDtpG~~~~~~~--~----~~~~~~~l~~i-~~aD~il~Vvd~~~~----- 164 (359)
+. ++.|. ..++.|+||||+...... . ..+.......+ ..+|++++|+|++.+
T Consensus 129 ~g~~~~is~~~i~l~I~~P~---~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d 205 (772)
T 3zvr_A 129 TGTNKGISPVPINLRVYSPH---VLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSD 205 (772)
T ss_dssp HCSTTCCCSCCEEEEEEETT---CCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCH
T ss_pred cCCCCcccccceEEEEecCC---CCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhH
Confidence 00 11111 336899999999863311 1 12222223333 578999999999763
Q ss_pred ------------ccEEEeCCcccCCcchHHHHhhhhhccHHHHHHHHHHHh-hhccccccchhhHHHHHHHHHHHHH---
Q 018241 165 ------------NDIVHVNGKVDPKSDVDVINLELVFSDLDQIEKRMEKLK-KGKAKDSQSKLKEDAEKAALEKIQQ--- 228 (359)
Q Consensus 165 ------------~~v~~v~nk~d~~~~~~~i~~el~~~d~~~l~~~~~~~~-~~~~~~~~Sa~~~~~~~~ll~~i~~--- 228 (359)
.+++.|+||+|.+..-..... ........+. ......++||+++.++.++++.+.+
T Consensus 206 ~l~ll~~L~~~g~pvIlVlNKiDlv~~~~~~~~--------il~~~~~~l~lg~~~VV~iSA~~G~GvdeL~eaI~~e~~ 277 (772)
T 3zvr_A 206 ALKIAKEVDPQGQRTIGVITKLDLMDEGTDARD--------VLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAERK 277 (772)
T ss_dssp HHHHHHHHCTTCSSEEEEEECTTSSCTTCCSHH--------HHTTCSSCCSSCEEECCCCCCEESSSSEEHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCEEEEEeCcccCCcchhhHH--------HHHHHhhhhhccCCceEEecccccccchhHHHHHHHHHH
Confidence 358899999998753221100 0000000000 0011157899999888888888876
Q ss_pred HhcCCCCCCCCCCCHH-----HHHHHH-HHhhhhcCCeEE
Q 018241 229 ALMDGKPARSVTLNDF-----ERDSIK-QLCLLTMKPIIY 262 (359)
Q Consensus 229 ~L~~~~~~~~~~~t~~-----~~e~i~-~~~~l~~kp~~y 262 (359)
.+++++++.. +++. -.++|+ ++...+.+++||
T Consensus 278 ffpe~P~yd~--ltDr~g~~~LaEiLrEkL~~hi~~ELP~ 315 (772)
T 3zvr_A 278 FFLSHPSYRH--LADRMGTPYLQKVLNQQLTNHIRDTLPG 315 (772)
T ss_dssp HHHHCTTTGG--GGGGCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccCCcchhh--hhhcccHHHHHHHHHHHHHHHHHhhCcc
Confidence 5887777632 3333 567888 788889999999
No 157
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=99.37 E-value=8.7e-13 Score=133.33 Aligned_cols=99 Identities=19% Similarity=0.220 Sum_probs=74.3
Q ss_pred CcEEEEEecCCCChhHHHHHHHhccccc---------------c------CCCCceeccceeEEEEeCCCccchhccccc
Q 018241 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQ---------------A------ANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114 (359)
Q Consensus 56 ~~~i~ivG~pn~GKSTL~n~L~~~~~~~---------------~------~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~ 114 (359)
..+|+|+|++|||||||+|+|++...+. + ...+++|+......+.+.
T Consensus 13 ~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~------------ 80 (528)
T 3tr5_A 13 RRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYK------------ 80 (528)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEET------------
T ss_pred CCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeC------------
Confidence 4699999999999999999997322111 0 012455666666655554
Q ss_pred cccccCceEEEEecCCCcCCCCcCcchhhhHhhHHHhcccceEEeecCCC----------------ccEEEeCCcccCCc
Q 018241 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFED----------------NDIVHVNGKVDPKS 178 (359)
Q Consensus 115 ~~~~~~~~i~lvDtpG~~~~~~~~~~~~~~~l~~i~~aD~il~Vvd~~~~----------------~~v~~v~nk~d~~~ 178 (359)
+..+.||||||+.++.. .+...++.+|++++|+|+++. .+++.+.||+|...
T Consensus 81 -----~~~i~liDTPG~~df~~-------~~~~~l~~aD~allVvDa~~g~~~~t~~~~~~~~~~~iPiivviNK~Dl~~ 148 (528)
T 3tr5_A 81 -----DYLINLLDTPGHADFTE-------DTYRTLTAVDSALMVIDAAKGVEPRTIKLMEVCRLRHTPIMTFINKMDRDT 148 (528)
T ss_dssp -----TEEEEEECCCCSTTCCH-------HHHHGGGGCSEEEEEEETTTCSCHHHHHHHHHHHTTTCCEEEEEECTTSCC
T ss_pred -----CEEEEEEECCCchhHHH-------HHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEeCCCCcc
Confidence 46799999999977654 677888999999999999873 36889999999753
No 158
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=99.37 E-value=7.1e-13 Score=132.70 Aligned_cols=144 Identities=19% Similarity=0.145 Sum_probs=91.7
Q ss_pred CcEEEEEecCCCChhHHHHHHHhccc------cccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecC
Q 018241 56 SLRAGIVGLPNVGKSTLFNAVVENGK------AQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIA 129 (359)
Q Consensus 56 ~~~i~ivG~pn~GKSTL~n~L~~~~~------~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtp 129 (359)
.++|+++|++|+|||||+|+|++... ......+++|++.....+.++ +..+.|||||
T Consensus 19 ~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~-----------------~~~i~iiDtP 81 (482)
T 1wb1_A 19 NINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLE-----------------NYRITLVDAP 81 (482)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEET-----------------TEEEEECCCS
T ss_pred CCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEEC-----------------CEEEEEEECC
Confidence 47999999999999999999996541 234455677777665555554 3579999999
Q ss_pred CCcCCCCcCcchhhhHhhHHHhcccceEEeecCCC----------------ccEEEeCCcccCCcch--HHHHhhhhhcc
Q 018241 130 GLVKGASQGEGLGNKFLSHIREVDSILQVVRCFED----------------NDIVHVNGKVDPKSDV--DVINLELVFSD 191 (359)
Q Consensus 130 G~~~~~~~~~~~~~~~l~~i~~aD~il~Vvd~~~~----------------~~v~~v~nk~d~~~~~--~~i~~el~~~d 191 (359)
|..+ +.......++.+|++++|+|+.+. .+.+.+.||+|..... +.+.+
T Consensus 82 Gh~~-------~~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~~~ip~IvviNK~Dl~~~~~~~~~~~------ 148 (482)
T 1wb1_A 82 GHAD-------LIRAVVSAADIIDLALIVVDAKEGPKTQTGEHMLILDHFNIPIIVVITKSDNAGTEEIKRTEM------ 148 (482)
T ss_dssp SHHH-------HHHHHHHHTTSCCEEEEEEETTTCSCHHHHHHHHHHHHTTCCBCEEEECTTSSCHHHHHHHHH------
T ss_pred ChHH-------HHHHHHHHHhhCCEEEEEEecCCCccHHHHHHHHHHHHcCCCEEEEEECCCcccchhHHHHHH------
Confidence 9843 333566777899999999999872 3468899999987421 11111
Q ss_pred HHHHHHHHHHH-h-hhccccccchhhHHHHHHHHHHHHHHhc
Q 018241 192 LDQIEKRMEKL-K-KGKAKDSQSKLKEDAEKAALEKIQQALM 231 (359)
Q Consensus 192 ~~~l~~~~~~~-~-~~~~~~~~Sa~~~~~~~~ll~~i~~~L~ 231 (359)
.+...+... . ......++||+.+.++.++++.+.+.++
T Consensus 149 --~l~~~l~~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~i~ 188 (482)
T 1wb1_A 149 --IMKSILQSTHNLKNSSIIPISAKTGFGVDELKNLIITTLN 188 (482)
T ss_dssp --HHHHHHHHSSSGGGCCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred --HHHHHHhhhcccccceEEEEECcCCCCHHHHHHHHHHhhc
Confidence 112212111 0 0112257899999999999999988764
No 159
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=99.36 E-value=5.7e-13 Score=129.03 Aligned_cols=103 Identities=19% Similarity=0.198 Sum_probs=80.0
Q ss_pred CcEEEEEecCCCChhHHHHHHHhc-----cccccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCC
Q 018241 56 SLRAGIVGLPNVGKSTLFNAVVEN-----GKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAG 130 (359)
Q Consensus 56 ~~~i~ivG~pn~GKSTL~n~L~~~-----~~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG 130 (359)
..+|+++|.||+|||||+|+|++. ..+.++++||||++..... ++ ..+.++||||
T Consensus 162 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~gtT~~~~~~~--~~------------------~~~~liDtPG 221 (369)
T 3ec1_A 162 GGDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTLDMIEIP--LE------------------SGATLYDTPG 221 (369)
T ss_dssp TSCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTTSSCEEEEEE--CS------------------TTCEEEECCS
T ss_pred cCcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCCCeEEeeEEEE--eC------------------CCeEEEeCCC
Confidence 468999999999999999999976 4677899999998766543 22 2489999999
Q ss_pred CcCCCCcCcchhhhHhhHH---HhcccceEEeecCC----------------CccEEEeCCcccCCc
Q 018241 131 LVKGASQGEGLGNKFLSHI---REVDSILQVVRCFE----------------DNDIVHVNGKVDPKS 178 (359)
Q Consensus 131 ~~~~~~~~~~~~~~~l~~i---~~aD~il~Vvd~~~----------------~~~v~~v~nk~d~~~ 178 (359)
+.......+.+....+..+ +..|++++++|+.. ..+++.+.||.|++.
T Consensus 222 ~~~~~~~~~~l~~~~l~~~~~~~~i~~~~~~l~~~~~~~~g~l~~l~~l~~~~~~~~~v~~k~d~~~ 288 (369)
T 3ec1_A 222 IINHHQMAHFVDARDLKIITPKREIHPRVYQLNEGQTLFFGGLARLDYIKGGRRSFVCYMANELTVH 288 (369)
T ss_dssp CCCCSSGGGGSCTTTHHHHSCSSCCCCEEEEECTTEEEEETTTEEEEEEESSSEEEEEEECTTSCEE
T ss_pred cCcHHHHHHHHhHHHHHHHhcccccCceEEEEcCCceEEECCEEEEEEccCCCceEEEEecCCcccc
Confidence 9876544555666677777 78999999999832 235677888888763
No 160
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=99.35 E-value=8e-14 Score=142.85 Aligned_cols=100 Identities=18% Similarity=0.109 Sum_probs=53.5
Q ss_pred CCcEEEEEecCCCChhHHHHHHHhccccccCC------------------------------CCceeccceeEEEEeCCC
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAAN------------------------------FPFCTIEPNVGIVAVPDP 104 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~------------------------------~p~tT~~~~~g~~~~~~~ 104 (359)
..++|+++|++|+|||||+|+|++........ .+|+|++.....+..+
T Consensus 176 ~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~~-- 253 (592)
T 3mca_A 176 PVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFESD-- 253 (592)
T ss_dssp CEEEEEEECCSSSTHHHHHHHHHHHHHCC---------------------------------------------------
T ss_pred CccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEeC--
Confidence 44789999999999999999998543322221 3455655555444433
Q ss_pred ccchhccccccccccCceEEEEecCCCcCCCCcCcchhhhHhhHHHhcccceEEeecCCC--------------------
Q 018241 105 RLHVLSGLSKSQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFED-------------------- 164 (359)
Q Consensus 105 r~~~l~~~~~~~~~~~~~i~lvDtpG~~~~~~~~~~~~~~~l~~i~~aD~il~Vvd~~~~-------------------- 164 (359)
+.++.||||||+.++.. .....++.||++|+|||+.+.
T Consensus 254 ---------------~~~i~iiDTPGh~~f~~-------~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~ 311 (592)
T 3mca_A 254 ---------------KKIYEIGDAPGHRDFIS-------GMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLR 311 (592)
T ss_dssp --------------------CCEEESSSEEEE-------ECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHH
T ss_pred ---------------CeEEEEEECCChHHHHH-------HHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHH
Confidence 35699999999975543 345566889999999999752
Q ss_pred ---c-cEEEeCCcccCCc
Q 018241 165 ---N-DIVHVNGKVDPKS 178 (359)
Q Consensus 165 ---~-~v~~v~nk~d~~~ 178 (359)
. .++.+.||+|...
T Consensus 312 ~lgip~iIvviNKiDl~~ 329 (592)
T 3mca_A 312 ALGISEIVVSVNKLDLMS 329 (592)
T ss_dssp HSSCCCEEEEEECGGGGT
T ss_pred HcCCCeEEEEEecccccc
Confidence 1 2778999999764
No 161
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.35 E-value=2.8e-12 Score=119.64 Aligned_cols=163 Identities=14% Similarity=0.146 Sum_probs=88.2
Q ss_pred CCcEEEEEecCCCChhHHHHHHHhcccc-----ccCCCCceecccee---EEEEe--CC---Cccchhc-----------
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVVENGKA-----QAANFPFCTIEPNV---GIVAV--PD---PRLHVLS----------- 110 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~~~~~~-----~~~~~p~tT~~~~~---g~~~~--~~---~r~~~l~----------- 110 (359)
..++|+++|.||||||||+|+|+|.... .++..|+.|+-.+. ....+ .+ ...+.+.
T Consensus 25 ~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~~~i~ 104 (299)
T 2aka_B 25 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT 104 (299)
T ss_dssp CCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHC
T ss_pred CCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHHHHhc
Confidence 4579999999999999999999976654 33444431110000 00000 00 0011000
Q ss_pred -------------cccccccccCceEEEEecCCCcCCCC--cCc----chhhhHhhHHHhcccce-EEeecCCC------
Q 018241 111 -------------GLSKSQKAVPASVEFVDIAGLVKGAS--QGE----GLGNKFLSHIREVDSIL-QVVRCFED------ 164 (359)
Q Consensus 111 -------------~~~~~~~~~~~~i~lvDtpG~~~~~~--~~~----~~~~~~l~~i~~aD~il-~Vvd~~~~------ 164 (359)
+++.+. ..++.||||||+..... ..+ .+...+..+++.+|.++ +|+|+.++
T Consensus 105 g~~~gi~~~~~~~~~~~~~---~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~ 181 (299)
T 2aka_B 105 GTNKGISPVPINLRVYSPH---VLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDA 181 (299)
T ss_dssp SSTTCCCSCCEEEEEEETT---CCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHH
T ss_pred ccCCCccccceEEEEeCCC---CCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHH
Confidence 000110 25799999999975331 011 23345566777887665 79998652
Q ss_pred -----------ccEEEeCCcccCCcchHHHHhhhhhccHHHHHHHHHHHh-hhccccccchhhHHHHHHHHHHHHH
Q 018241 165 -----------NDIVHVNGKVDPKSDVDVINLELVFSDLDQIEKRMEKLK-KGKAKDSQSKLKEDAEKAALEKIQQ 228 (359)
Q Consensus 165 -----------~~v~~v~nk~d~~~~~~~i~~el~~~d~~~l~~~~~~~~-~~~~~~~~Sa~~~~~~~~ll~~i~~ 228 (359)
.+++.+.||+|........... ++.....+. .......+||+++.++.++++.+.+
T Consensus 182 ~~~~~~~~~~~~~~i~V~NK~Dl~~~~~~~~~~--------~~~~~~~~~~~~~~v~~~SA~~~~gi~~l~~~l~~ 249 (299)
T 2aka_B 182 LKIAKEVDPQGQRTIGVITKLDLMDEGTDARDV--------LENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA 249 (299)
T ss_dssp HHHHHHHCTTCSSEEEEEECGGGSCTTCCCHHH--------HTTCSSCCTTCEEECCCCCCBCTTSCBCHHHHHHH
T ss_pred HHHHHHhCCCCCeEEEEEEccccCCCCchHHHH--------HhCCcCcCCCCcEEEECCChhhccccccHHHHHHH
Confidence 2578899999976432211110 110000000 0011146789998888888777765
No 162
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.34 E-value=1.5e-12 Score=135.90 Aligned_cols=121 Identities=19% Similarity=0.201 Sum_probs=79.3
Q ss_pred ccCCcEEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeE--------EEEeCCCc----cc-------------
Q 018241 53 ISMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVG--------IVAVPDPR----LH------------- 107 (359)
Q Consensus 53 ~~~~~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g--------~~~~~~~r----~~------------- 107 (359)
....++|+|+|.||+|||||+|+|+|.....++..|+|.. +..- .+.+.+.. ++
T Consensus 66 ~~~~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T~~-~~~i~~g~~~~~t~~~~~g~~~~~~~~~~i~~~~~i~~~ 144 (695)
T 2j69_A 66 QQGVFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAV-LTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPA 144 (695)
T ss_dssp HHCCEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTTCC-CEEEEECSSCEEEEEESSSCCCCEEEHHHHHHHSCCCHH
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCccc-eEEEEeCCCCeEEEEEcCCCcccccChhhhhhhhcCCHH
Confidence 4567999999999999999999999888788888886621 1100 11110000 00
Q ss_pred ----------------hhccccccccccCceEEEEecCCCcCCCCcCcchhhhHhhHHHhcccceEEeecCCC-------
Q 018241 108 ----------------VLSGLSKSQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFED------- 164 (359)
Q Consensus 108 ----------------~l~~~~~~~~~~~~~i~lvDtpG~~~~~~~~~~~~~~~l~~i~~aD~il~Vvd~~~~------- 164 (359)
....++.|.......+.||||||+..... ....+...+++||++++|+|+++.
T Consensus 145 ~~~~l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~~----~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~ 220 (695)
T 2j69_A 145 EAKKLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTEA----RNELSLGYVNNCHAILFVMRASQPCTLGERR 220 (695)
T ss_dssp HHHHHHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHHT----CHHHHTHHHHSSSEEEEEEETTSTTCHHHHH
T ss_pred HHHHHhhccccccccceEEEEEccchhccCCeEEEECCCCCchhh----HHHHHHHHHHhCCEEEEEEeCCCccchhHHH
Confidence 00112222222224699999999964321 234667888999999999998652
Q ss_pred ----------ccEEEeCCcccCCc
Q 018241 165 ----------NDIVHVNGKVDPKS 178 (359)
Q Consensus 165 ----------~~v~~v~nk~d~~~ 178 (359)
.+++.+.||+|...
T Consensus 221 ~l~~~l~~~~~~iiiVlNK~Dl~~ 244 (695)
T 2j69_A 221 YLENYIKGRGLTVFFLVNAWDQVR 244 (695)
T ss_dssp HHHHHTTTSCCCEEEEEECGGGGG
T ss_pred HHHHHHHhhCCCEEEEEECccccc
Confidence 24788999999764
No 163
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=99.32 E-value=7.5e-13 Score=127.25 Aligned_cols=160 Identities=14% Similarity=0.106 Sum_probs=82.2
Q ss_pred ccCCcEEEEEecCCCChhHHHHHHHhc------cccccCCCCceeccceeEEEEeCCCccchh-----------------
Q 018241 53 ISMSLRAGIVGLPNVGKSTLFNAVVEN------GKAQAANFPFCTIEPNVGIVAVPDPRLHVL----------------- 109 (359)
Q Consensus 53 ~~~~~~i~ivG~pn~GKSTL~n~L~~~------~~~~~~~~p~tT~~~~~g~~~~~~~r~~~l----------------- 109 (359)
......|+|+|+||||||||+|+|++. ..+..+..|+++. ..|.+--...|+..+
T Consensus 71 ~~~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~dp~~~~--~~g~~l~d~~rm~~~~~~~~~~v~~~~~~~~l 148 (349)
T 2www_A 71 KPLAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVDPSSCT--SGGSLLGDKTRMTELSRDMNAYIRPSPTRGTL 148 (349)
T ss_dssp CCSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC------------------CCSTTCTTEEEECC------
T ss_pred ccCceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEeecCCCCC--cCcchhchHHHHHHhcCCCCEEEEecCCcccc
Confidence 345789999999999999999999962 2222333333321 001000000000000
Q ss_pred --------ccccccccccCceEEEEecCCCcCCCCcCcchhhhHhhHHHhcccceEEeecCCCc------------cEEE
Q 018241 110 --------SGLSKSQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDN------------DIVH 169 (359)
Q Consensus 110 --------~~~~~~~~~~~~~i~lvDtpG~~~~~~~~~~~~~~~l~~i~~aD~il~Vvd~~~~~------------~v~~ 169 (359)
..+. .....+..+.|+||||+.... ......+|++++|+|++... +.+.
T Consensus 149 gg~tr~~~~~~~-~~~~~~~~~iliDT~Gi~~~~----------~~l~~~~d~vl~V~d~~~~~~~~~i~~~il~~~~iv 217 (349)
T 2www_A 149 GGVTRTTNEAIL-LCEGAGYDIILIETVGVGQSE----------FAVADMVDMFVLLLPPAGGDELQGIKRGIIEMADLV 217 (349)
T ss_dssp ---CTTHHHHHH-HHHHTTCSEEEEECCCC--CH----------HHHHTTCSEEEEEECCC------------CCSCSEE
T ss_pred ccchHHHHHHHH-hhccCCCCEEEEECCCcchhh----------hhHHhhCCEEEEEEcCCcchhHHHhHHHHHhcCCEE
Confidence 0000 001124579999999985321 12246899999999986421 2456
Q ss_pred eCCcccCCcchHHHHhhhhhccHHHHHHHHHHHhh-----hccccccchhhHHHHHHHHHHHHHHhc
Q 018241 170 VNGKVDPKSDVDVINLELVFSDLDQIEKRMEKLKK-----GKAKDSQSKLKEDAEKAALEKIQQALM 231 (359)
Q Consensus 170 v~nk~d~~~~~~~i~~el~~~d~~~l~~~~~~~~~-----~~~~~~~Sa~~~~~~~~ll~~i~~~L~ 231 (359)
+.||+|...... ... ....+...+..... ......+||+++.++.++++.+.++++
T Consensus 218 VlNK~Dl~~~~~-~~~-----~~~~l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~L~~~I~~~~~ 278 (349)
T 2www_A 218 AVTKSDGDLIVP-ARR-----IQAEYVSALKLLRKRSQVWKPKVIRISARSGEGISEMWDKMKDFQD 278 (349)
T ss_dssp EECCCSGGGHHH-HHH-----HHHHHHHHHTTCC-----CCCEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred EEeeecCCCchh-HHH-----HHHHHHHHHHhcCccccCCCceEEEEecCCCCCHHHHHHHHHHHHH
Confidence 778888653111 000 00111111100000 011145799999999999999988875
No 164
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=99.32 E-value=4.5e-12 Score=122.72 Aligned_cols=133 Identities=11% Similarity=0.037 Sum_probs=89.6
Q ss_pred EEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCCcCCCCc
Q 018241 58 RAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGASQ 137 (359)
Q Consensus 58 ~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~~~~~~ 137 (359)
+|+++|++|+|||||+|+|+ ..+.|++.....+..+ ..++.||||||..++..
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~---------~~giTi~~~~~~~~~~-----------------~~~i~iiDtPGh~~f~~- 75 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLG---------KKGTSSDITMYNNDKE-----------------GRNMVFVDAHSYPKTLK- 75 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTS---------EEEEESSSEEEEECSS-----------------SSEEEEEECTTTTTCHH-
T ss_pred EEEEECCCCCCHHHHHHHHH---------hCCEEEEeeEEEEecC-----------------CeEEEEEECCChHHHHH-
Confidence 99999999999999999998 3456766655554443 35699999999975432
Q ss_pred CcchhhhHhhHHHhcccceEEeecCCC----------------ccE-EEeCC-cccCCcchHHHHhhhhhccHHHHHHHH
Q 018241 138 GEGLGNKFLSHIREVDSILQVVRCFED----------------NDI-VHVNG-KVDPKSDVDVINLELVFSDLDQIEKRM 199 (359)
Q Consensus 138 ~~~~~~~~l~~i~~aD~il~Vvd~~~~----------------~~v-~~v~n-k~d~~~~~~~i~~el~~~d~~~l~~~~ 199 (359)
.....++.+|++++|+| .+. .+. +.+.| |+|. . ...+.. . .+.+...+
T Consensus 76 ------~~~~~~~~aD~ailVvd-~~g~~~qt~e~~~~~~~~~i~~~ivvvNNK~Dl-~-~~~~~~-~----~~~i~~~l 141 (370)
T 2elf_A 76 ------SLITALNISDIAVLCIP-PQGLDAHTGECIIALDLLGFKHGIIALTRSDST-H-MHAIDE-L----KAKLKVIT 141 (370)
T ss_dssp ------HHHHHHHTCSEEEEEEC-TTCCCHHHHHHHHHHHHTTCCEEEEEECCGGGS-C-HHHHHH-H----HHHHHHHT
T ss_pred ------HHHHHHHHCCEEEEEEc-CCCCcHHHHHHHHHHHHcCCCeEEEEEEeccCC-C-HHHHHH-H----HHHHHHHH
Confidence 55667799999999999 542 234 77788 9997 3 222111 0 01111111
Q ss_pred HHHh-hhccccc--cchhh---HHHHHHHHHHHHHHhc
Q 018241 200 EKLK-KGKAKDS--QSKLK---EDAEKAALEKIQQALM 231 (359)
Q Consensus 200 ~~~~-~~~~~~~--~Sa~~---~~~~~~ll~~i~~~L~ 231 (359)
.... ......+ +||+. +.++.++++.+.+.++
T Consensus 142 ~~~~~~~~~ii~~~~SA~~~~~g~gi~~L~~~l~~~~~ 179 (370)
T 2elf_A 142 SGTVLQDWECISLNTNKSAKNPFEGVDELKARINEVAE 179 (370)
T ss_dssp TTSTTTTCEEEECCCCTTSSSTTTTHHHHHHHHHHHHH
T ss_pred HhcCCCceEEEecccccccCcCCCCHHHHHHHHHhhcc
Confidence 1000 0011256 89999 9999999999988875
No 165
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.31 E-value=2e-12 Score=113.98 Aligned_cols=154 Identities=14% Similarity=0.176 Sum_probs=80.5
Q ss_pred cCCcEEEEEecCCCChhHHHHHHHhcc-ccccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCCc
Q 018241 54 SMSLRAGIVGLPNVGKSTLFNAVVENG-KAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLV 132 (359)
Q Consensus 54 ~~~~~i~ivG~pn~GKSTL~n~L~~~~-~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~ 132 (359)
..+.+|+|+|.+|||||||+|+|+|.. .+.+++.+|+|... +.+.+. ..+.++||||+.
T Consensus 24 ~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~--~~~~~~------------------~~~~l~Dt~G~~ 83 (210)
T 1pui_A 24 DTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLI--NLFEVA------------------DGKRLVDLPGYG 83 (210)
T ss_dssp SCSEEEEEEECTTSSHHHHHTTTCCC-------------CCE--EEEEEE------------------TTEEEEECCCCC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceee--EEEEec------------------CCEEEEECcCCc
Confidence 355799999999999999999999665 35556777777542 333332 148899999986
Q ss_pred CCCCcCc---ch---hhhHhhHHHhcccceEEeecCCC----------------ccEEEeCCcccCCcchHHHHhhhhhc
Q 018241 133 KGASQGE---GL---GNKFLSHIREVDSILQVVRCFED----------------NDIVHVNGKVDPKSDVDVINLELVFS 190 (359)
Q Consensus 133 ~~~~~~~---~~---~~~~l~~i~~aD~il~Vvd~~~~----------------~~v~~v~nk~d~~~~~~~i~~el~~~ 190 (359)
......+ .+ ...++...+.+|.+++|+|+... .+++.+.||+|....-+.-.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~v~nK~D~~s~~~~~~------ 157 (210)
T 1pui_A 84 YAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDSNIAVLVLLTKADKLASGARKA------ 157 (210)
T ss_dssp ------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSCHHHHHH------
T ss_pred ccccCHHHHHHHHHHHHHHHHhhhcccEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEecccCCCchhHHH------
Confidence 4321111 01 11223333578999999998652 13455677777654321100
Q ss_pred cHHHHHHHHHHHhhhccccccchhhHHHHHHHHHHHHHHhcCC
Q 018241 191 DLDQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMDG 233 (359)
Q Consensus 191 d~~~l~~~~~~~~~~~~~~~~Sa~~~~~~~~ll~~i~~~L~~~ 233 (359)
....+..............++|++++.++.++++.+.+.+.++
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~~~~ 200 (210)
T 1pui_A 158 QLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTWFSEM 200 (210)
T ss_dssp HHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHHHHhhc
Confidence 0001111111000001114678888888888888888877654
No 166
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.31 E-value=1.4e-12 Score=132.17 Aligned_cols=159 Identities=13% Similarity=0.194 Sum_probs=87.0
Q ss_pred CCcEEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCCcCC
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~~~ 134 (359)
..+||++||.||||||||+|+|++.... ..+. .|..........+..+ .+.-..+.....+.+|||||....
T Consensus 40 ~~~kV~lvG~~~vGKSSLl~~l~~~~~~--~~~~-~t~g~~~~~~~~~~~~-----~v~~~~~~~~~~~~i~Dt~G~e~~ 111 (535)
T 3dpu_A 40 QEIKVHLIGDGMAGKTSLLKQLIGETFD--PKES-QTHGLNVVTKQAPNIK-----GLENDDELKECLFHFWDFGGQEIM 111 (535)
T ss_dssp CEEEEEEESSSCSSHHHHHHHHHC--------------CCCEEEEEGGGSG-----GGTTCSTTTTCEEEEECCCSCCTT
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCCC--CCCC-CccceEEEEecccccc-----ceeecCCCceEEEEEEECCcHHHH
Confidence 4589999999999999999999954432 1111 1111111111111100 000011112467999999996543
Q ss_pred CCcCcchhhhHhhHHHhcccceEEeecCC----------------CccEEEeCCcccCCcchHHHHhhhhhccHHHHHHH
Q 018241 135 ASQGEGLGNKFLSHIREVDSILQVVRCFE----------------DNDIVHVNGKVDPKSDVDVINLELVFSDLDQIEKR 198 (359)
Q Consensus 135 ~~~~~~~~~~~l~~i~~aD~il~Vvd~~~----------------~~~v~~v~nk~d~~~~~~~i~~el~~~d~~~l~~~ 198 (359)
.. +. ...++++|++++|+|++. +.+++.+.||+|....... ..+.+.+.
T Consensus 112 ~~----~~---~~~l~~~d~ii~V~D~s~~~~~~~~~~~l~~~~~~~pvilV~NK~Dl~~~~~v--------~~~~~~~~ 176 (535)
T 3dpu_A 112 HA----SH---QFFMTRSSVYMLLLDSRTDSNKHYWLRHIEKYGGKSPVIVVMNKIDENPSYNI--------EQKKINER 176 (535)
T ss_dssp TT----TC---HHHHHSSEEEEEEECGGGGGGHHHHHHHHHHHSSSCCEEEEECCTTTCTTCCC--------CHHHHHHH
T ss_pred HH----HH---HHHccCCcEEEEEEeCCCchhHHHHHHHHHHhCCCCCEEEEEECCCccccccc--------CHHHHHHH
Confidence 33 22 234577999999999876 2578999999997643211 01111121
Q ss_pred HHHHhhhccccccchhhHHHHHHHHHHHHHHhcCCCCCCC
Q 018241 199 MEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMDGKPARS 238 (359)
Q Consensus 199 ~~~~~~~~~~~~~Sa~~~~~~~~ll~~i~~~L~~~~~~~~ 238 (359)
..... .....+||+++.++.++++.+.+.+.+.....+
T Consensus 177 ~~~~~--~~~~~vSA~~g~gi~eL~~~l~~~~~~~~~~~~ 214 (535)
T 3dpu_A 177 FPAIE--NRFHRISCKNGDGVESIAKSLKSAVLHPDSIYG 214 (535)
T ss_dssp CGGGT--TCEEECCC-----CTTHHHHHHHHHTCTTSGGG
T ss_pred HHhcC--CceEEEecCcccCHHHHHHHHHHHHhcccchhc
Confidence 11111 111578999999999999999999976554333
No 167
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.31 E-value=7.2e-12 Score=109.90 Aligned_cols=143 Identities=17% Similarity=0.126 Sum_probs=87.8
Q ss_pred CcEEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCCcCCC
Q 018241 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA 135 (359)
Q Consensus 56 ~~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~~~~ 135 (359)
.++|+++|.+|||||||+|+|+|..... ...|..+.+...+.+.+.+. ...+.+|||||.....
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~~~~~-~~~~t~~~~~~~~~i~~~g~---------------~~~~~i~Dt~g~~~~~ 68 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRNEFNL-ESKSTIGVEFATRSIQVDGK---------------TIKAQIWDTAGQERYR 68 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHSCCCC----CCCSCEEEEEEEEETTE---------------EEEEEEEECSSGGGTT
T ss_pred eEEEEEECcCCCCHHHHHHHHhcCCCCC-CCCCccceeEEEEEEEECCE---------------EEEEEEEECCCchhhh
Confidence 4799999999999999999999654432 23344445566677766542 1357899999976443
Q ss_pred CcCcchhhhHhhHHHhcccceEEeecCC--------------------CccEEEeCCcccCCcchHHHHhhhhhccHHHH
Q 018241 136 SQGEGLGNKFLSHIREVDSILQVVRCFE--------------------DNDIVHVNGKVDPKSDVDVINLELVFSDLDQI 195 (359)
Q Consensus 136 ~~~~~~~~~~l~~i~~aD~il~Vvd~~~--------------------~~~v~~v~nk~d~~~~~~~i~~el~~~d~~~l 195 (359)
. ......+.+|++++|+|+++ ..+++.+.||+|....... ..+..
T Consensus 69 ~-------~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~--------~~~~a 133 (199)
T 2f9l_A 69 R-------ITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAV--------PTDEA 133 (199)
T ss_dssp C-------CCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCS--------CHHHH
T ss_pred h-------hhHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccCc--------CHHHH
Confidence 2 12234467899999999865 1246778888886432111 00111
Q ss_pred HHHHHHHhhhccccccchhhHHHHHHHHHHHHHHhc
Q 018241 196 EKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALM 231 (359)
Q Consensus 196 ~~~~~~~~~~~~~~~~Sa~~~~~~~~ll~~i~~~L~ 231 (359)
.. +..-.. .....+|++++.++.++++.+.+.+.
T Consensus 134 ~~-l~~~~~-~~~~d~Sal~~~~i~~l~~~l~~~~~ 167 (199)
T 2f9l_A 134 RA-FAEKNN-LSFIETSALDSTNVEEAFKNILTEIY 167 (199)
T ss_dssp HH-HHHHTT-CEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred HH-HHHHcC-CeEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 11 111001 11134788888888888887777663
No 168
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=99.31 E-value=2.1e-12 Score=126.13 Aligned_cols=148 Identities=16% Similarity=0.143 Sum_probs=90.4
Q ss_pred CcEEEEEecCCCChhHHHHHHHhccccc--cC-------------CCCceeccceeEEEEeCCCccchhccccccccccC
Q 018241 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQ--AA-------------NFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVP 120 (359)
Q Consensus 56 ~~~i~ivG~pn~GKSTL~n~L~~~~~~~--~~-------------~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~ 120 (359)
.++|+++|++|+|||||+|+|++..... .. ...+.|++.....+... .
T Consensus 3 ~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~-----------------~ 65 (397)
T 1d2e_A 3 HVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTA-----------------A 65 (397)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECS-----------------S
T ss_pred eEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccC-----------------C
Confidence 4799999999999999999999531100 00 02334544322222211 3
Q ss_pred ceEEEEecCCCcCCCCcCcchhhhHhhHHHhcccceEEeecCCC----------------cc-EEEeCCcccCCcchHHH
Q 018241 121 ASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFED----------------ND-IVHVNGKVDPKSDVDVI 183 (359)
Q Consensus 121 ~~i~lvDtpG~~~~~~~~~~~~~~~l~~i~~aD~il~Vvd~~~~----------------~~-v~~v~nk~d~~~~~~~i 183 (359)
..+.||||||..++. ......++.+|++++|+|+.+. .+ ++.+.||+|...+.+.+
T Consensus 66 ~~~~iiDtpG~~~f~-------~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~~~vp~iivviNK~Dl~~~~~~~ 138 (397)
T 1d2e_A 66 RHYAHTDCPGHADYV-------KNMITGTAPLDGCILVVAANDGPMPQTREHLLLARQIGVEHVVVYVNKADAVQDSEMV 138 (397)
T ss_dssp CEEEEEECSSHHHHH-------HHHHHTSSCCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCCEEEEEECGGGCSCHHHH
T ss_pred eEEEEEECCChHHHH-------HHHHhhHhhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCeEEEEEECcccCCCHHHH
Confidence 579999999986432 2445567889999999999873 23 57889999987532221
Q ss_pred HhhhhhccHHHHHHHHHHHhh---hccccccchhhHHH----------HHHHHHHHHHHhcC
Q 018241 184 NLELVFSDLDQIEKRMEKLKK---GKAKDSQSKLKEDA----------EKAALEKIQQALMD 232 (359)
Q Consensus 184 ~~el~~~d~~~l~~~~~~~~~---~~~~~~~Sa~~~~~----------~~~ll~~i~~~L~~ 232 (359)
+. + . +.+...+....- .....++||+.+.+ +.++++.+.+.++.
T Consensus 139 ~~-~-~---~~~~~~l~~~~~~~~~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~~p~ 195 (397)
T 1d2e_A 139 EL-V-E---LEIRELLTEFGYKGEETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYIPV 195 (397)
T ss_dssp HH-H-H---HHHHHHHHHTTSCTTTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHSCC
T ss_pred HH-H-H---HHHHHHHHHcCCCcccCcEEEeehhhcccccCCCccCCcHHHHHHHHHHhCCC
Confidence 11 0 0 111222222110 11125678888764 78899999888863
No 169
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=99.31 E-value=3.4e-12 Score=125.22 Aligned_cols=165 Identities=16% Similarity=0.122 Sum_probs=97.1
Q ss_pred CCcEEEEEecCCCChhHHHHHHHhcccc--ccCCCCceeccceeEEEEeCCCc-c-chhcccccc---ccc-cCceEEEE
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVVENGKA--QAANFPFCTIEPNVGIVAVPDPR-L-HVLSGLSKS---QKA-VPASVEFV 126 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~~~~~~--~~~~~p~tT~~~~~g~~~~~~~r-~-~~l~~~~~~---~~~-~~~~i~lv 126 (359)
..++|+++|++|+|||||+|+|+|.... .....++.|++.......+.... . .+......+ ... ....+.||
T Consensus 9 ~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~ii 88 (410)
T 1kk1_A 9 AEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSFI 88 (410)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEEEE
T ss_pred CccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEEEEE
Confidence 4479999999999999999999954322 12223566766544433321100 0 000000000 000 01579999
Q ss_pred ecCCCcCCCCcCcchhhhHhhHHHhcccceEEeecCCC------------------ccEEEeCCcccCCcchHHHHhhhh
Q 018241 127 DIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFED------------------NDIVHVNGKVDPKSDVDVINLELV 188 (359)
Q Consensus 127 DtpG~~~~~~~~~~~~~~~l~~i~~aD~il~Vvd~~~~------------------~~v~~v~nk~d~~~~~~~i~~el~ 188 (359)
||||..++ ...+...+..+|++++|+|+.+. .+++.+.||+|....... ..
T Consensus 89 DtPGh~~f-------~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~~~~~~iivviNK~Dl~~~~~~-~~--- 157 (410)
T 1kk1_A 89 DAPGHEAL-------MTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQIIGQKNIIIAQNKIELVDKEKA-LE--- 157 (410)
T ss_dssp ECSSHHHH-------HHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHHTCCCEEEEEECGGGSCHHHH-HH---
T ss_pred ECCChHHH-------HHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHHHHHcCCCcEEEEEECccCCCHHHH-HH---
Confidence 99997532 33556667889999999999863 246788999997753211 10
Q ss_pred hccHHHHHHHHHHH-hhhccccccchhhHHHHHHHHHHHHHHhcC
Q 018241 189 FSDLDQIEKRMEKL-KKGKAKDSQSKLKEDAEKAALEKIQQALMD 232 (359)
Q Consensus 189 ~~d~~~l~~~~~~~-~~~~~~~~~Sa~~~~~~~~ll~~i~~~L~~ 232 (359)
..+.+.+.+... ........+||+.+.++.++++.+.+.++.
T Consensus 158 --~~~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~~~~ 200 (410)
T 1kk1_A 158 --NYRQIKEFIEGTVAENAPIIPISALHGANIDVLVKAIEDFIPT 200 (410)
T ss_dssp --HHHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSCC
T ss_pred --HHHHHHHHHHhcCcCCCeEEEeeCCCCCCHHHHHHHHHHhCCC
Confidence 001111111100 001112578999999999999999988853
No 170
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=99.30 E-value=7.2e-12 Score=127.30 Aligned_cols=122 Identities=17% Similarity=0.198 Sum_probs=76.4
Q ss_pred CCcEEEEEecCCCChhHHHHHHHhcccc--ccCCCCceeccceeEEEEeCC------Cc--------cchhc--------
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVVENGKA--QAANFPFCTIEPNVGIVAVPD------PR--------LHVLS-------- 110 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~~~~~~--~~~~~p~tT~~~~~g~~~~~~------~r--------~~~l~-------- 110 (359)
..++|+|+|.+|||||||+|+|+|...+ .+++.|+||+ ..+...... .. +..+.
T Consensus 64 ~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~--~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~~ 141 (550)
T 2qpt_A 64 GKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDC--FVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFLN 141 (550)
T ss_dssp SCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCS--EEEEECCSSSEEECCC------------------CCCT
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccce--EEEEEECCcccccCCceeeecCcccHHHHhhhcccccc
Confidence 4579999999999999999999977665 5788887763 222221110 00 00000
Q ss_pred --c-ccccccccCceEEEEecCCCcCCCCc--Ccc--hhhhHhhHHHhcccceEEeecCCC-----------------cc
Q 018241 111 --G-LSKSQKAVPASVEFVDIAGLVKGASQ--GEG--LGNKFLSHIREVDSILQVVRCFED-----------------ND 166 (359)
Q Consensus 111 --~-~~~~~~~~~~~i~lvDtpG~~~~~~~--~~~--~~~~~l~~i~~aD~il~Vvd~~~~-----------------~~ 166 (359)
. +..+... -.++.||||||+.+.... ... +.......++.+|++++|+|+.+. .+
T Consensus 142 ~~~~~~~~~~l-l~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~p 220 (550)
T 2qpt_A 142 RFMCAQLPNQV-LESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALRGHEDK 220 (550)
T ss_dssp TEEEEECCCHH-HHHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTTCGGG
T ss_pred cceEEeccccc-cCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHhcCCC
Confidence 0 0001000 036999999999763321 222 224455678899999999999662 25
Q ss_pred EEEeCCcccCCcc
Q 018241 167 IVHVNGKVDPKSD 179 (359)
Q Consensus 167 v~~v~nk~d~~~~ 179 (359)
++.++||+|.+..
T Consensus 221 vilVlNK~Dl~~~ 233 (550)
T 2qpt_A 221 IRVVLNKADMVET 233 (550)
T ss_dssp EEEEEECGGGSCH
T ss_pred EEEEEECCCccCH
Confidence 7899999998753
No 171
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=99.30 E-value=4.7e-12 Score=129.44 Aligned_cols=146 Identities=17% Similarity=0.112 Sum_probs=89.9
Q ss_pred CcEEEEEecCCCChhHHHHHHHhccccccC--------------CCCceeccceeEEEEeCCCccchhccccccccccCc
Q 018241 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAA--------------NFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPA 121 (359)
Q Consensus 56 ~~~i~ivG~pn~GKSTL~n~L~~~~~~~~~--------------~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~ 121 (359)
-.+|+|+|++|+|||||+++|++....... ...+.|+......+.+.. ......
T Consensus 6 irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~------------~dg~~~ 73 (600)
T 2ywe_A 6 VRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKA------------KDGNTY 73 (600)
T ss_dssp EEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEEC------------TTSCEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEc------------CCCCeE
Confidence 368999999999999999999843221110 012334333333333221 001125
Q ss_pred eEEEEecCCCcCCCCcCcchhhhHhhHHHhcccceEEeecCCC----------------ccEEEeCCcccCCcc-hHHHH
Q 018241 122 SVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFED----------------NDIVHVNGKVDPKSD-VDVIN 184 (359)
Q Consensus 122 ~i~lvDtpG~~~~~~~~~~~~~~~l~~i~~aD~il~Vvd~~~~----------------~~v~~v~nk~d~~~~-~~~i~ 184 (359)
.+.||||||+.++.. .....++.+|++++|+|+++. .+++.+.||+|.... .+.+.
T Consensus 74 ~inliDTPGh~dF~~-------ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~~~ipiIvviNKiDl~~a~~~~v~ 146 (600)
T 2ywe_A 74 KLHLIDTPGHVDFSY-------EVSRALAACEGALLLIDASQGIEAQTVANFWKAVEQDLVIIPVINKIDLPSADVDRVK 146 (600)
T ss_dssp EEEEECCCCSGGGHH-------HHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHHHTTCEEEEEEECTTSTTCCHHHHH
T ss_pred EEEEEECCCcHhHHH-------HHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHHCCCCEEEEEeccCccccCHHHHH
Confidence 689999999976543 556778999999999999873 357889999997532 21111
Q ss_pred hhhhhccHHHHHHHHHHHhhhc--cccccchhhHHHHHHHHHHHHHHhcC
Q 018241 185 LELVFSDLDQIEKRMEKLKKGK--AKDSQSKLKEDAEKAALEKIQQALMD 232 (359)
Q Consensus 185 ~el~~~d~~~l~~~~~~~~~~~--~~~~~Sa~~~~~~~~ll~~i~~~L~~ 232 (359)
.+ +....... ....+||+.+.++.++++.+.+.++.
T Consensus 147 ~e------------l~~~lg~~~~~vi~vSAktg~GI~~Lle~I~~~lp~ 184 (600)
T 2ywe_A 147 KQ------------IEEVLGLDPEEAILASAKEGIGIEEILEAIVNRIPP 184 (600)
T ss_dssp HH------------HHHTSCCCGGGCEECBTTTTBSHHHHHHHHHHHSCC
T ss_pred HH------------HHHhhCCCcccEEEEEeecCCCchHHHHHHHHhccc
Confidence 11 11110110 11467999999999999999999964
No 172
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=99.30 E-value=6.2e-12 Score=128.66 Aligned_cols=145 Identities=16% Similarity=0.132 Sum_probs=87.1
Q ss_pred cEEEEEecCCCChhHHHHHHHhccccccC--------------CCCceeccceeEEEEeCCCccchhccccccccccCce
Q 018241 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAA--------------NFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPAS 122 (359)
Q Consensus 57 ~~i~ivG~pn~GKSTL~n~L~~~~~~~~~--------------~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~ 122 (359)
.+|+|+|++++|||||+++|+........ ...|.|+......+.+.+. ......
T Consensus 5 rnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~------------~g~~~~ 72 (599)
T 3cb4_D 5 RNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKAS------------DGETYQ 72 (599)
T ss_dssp EEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECT------------TSCEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecC------------CCCeEE
Confidence 58999999999999999999853221110 0123444433333333210 011357
Q ss_pred EEEEecCCCcCCCCcCcchhhhHhhHHHhcccceEEeecCCC----------------ccEEEeCCcccCCcc-hHHHHh
Q 018241 123 VEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFED----------------NDIVHVNGKVDPKSD-VDVINL 185 (359)
Q Consensus 123 i~lvDtpG~~~~~~~~~~~~~~~l~~i~~aD~il~Vvd~~~~----------------~~v~~v~nk~d~~~~-~~~i~~ 185 (359)
+.||||||..++.. .....++.+|++++|+|+++. .+++.+.||+|.... .+.+..
T Consensus 73 l~liDTPGh~dF~~-------ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~~~~ipiIvViNKiDl~~a~~~~v~~ 145 (599)
T 3cb4_D 73 LNFIDTPGHVDFSY-------EVSRSLAACEGALLVVDAGQGVEAQTLANCYTAMEMDLEVVPVLNKIDLPAADPERVAE 145 (599)
T ss_dssp EEEEECCCCGGGHH-------HHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHHHTTCEEEEEEECTTSTTCCHHHHHH
T ss_pred EEEEECCCchHHHH-------HHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEeeeccCcccccHHHHHH
Confidence 99999999976543 566778999999999999873 357889999997642 111111
Q ss_pred hhhhccHHHHHHHHHHHhhhc--cccccchhhHHHHHHHHHHHHHHhcC
Q 018241 186 ELVFSDLDQIEKRMEKLKKGK--AKDSQSKLKEDAEKAALEKIQQALMD 232 (359)
Q Consensus 186 el~~~d~~~l~~~~~~~~~~~--~~~~~Sa~~~~~~~~ll~~i~~~L~~ 232 (359)
.+....... ....+||+.+.++.++++.+.+.++.
T Consensus 146 ------------ei~~~lg~~~~~vi~vSAktg~GI~~Ll~~I~~~lp~ 182 (599)
T 3cb4_D 146 ------------EIEDIVGIDATDAVRCSAKTGVGVQDVLERLVRDIPP 182 (599)
T ss_dssp ------------HHHHHTCCCCTTCEEECTTTCTTHHHHHHHHHHHSCC
T ss_pred ------------HHHHHhCCCcceEEEeecccCCCchhHHHHHhhcCCC
Confidence 111111110 11467999999999999999999864
No 173
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.28 E-value=9.7e-12 Score=107.70 Aligned_cols=150 Identities=15% Similarity=0.146 Sum_probs=82.2
Q ss_pred CcEEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCCcCCC
Q 018241 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA 135 (359)
Q Consensus 56 ~~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~~~~ 135 (359)
.++|+|+|.+|||||||+|+|++......+.+. .|.........+.- .........+.+|||||..+..
T Consensus 2 ~~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~-~t~g~~~~~~~~~~----------~~~~~~~~~~~i~Dt~G~~~~~ 70 (184)
T 2zej_A 2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQS-ATVGIDVKDWPIQI----------RDKRKRDLVLNVWDFAGREEFY 70 (184)
T ss_dssp -CEEEEESCTTSSHHHHHHHHTCC------------CSEEEEEEEC-------------------CEEEEEEECSHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCccCCCcc-eeccEEeEEeeecc----------ccCCCCceEEEEEecCCCHHHH
Confidence 369999999999999999999954222222222 12111111111110 0000013579999999985432
Q ss_pred CcCcchhhhHhhHHHhcccceEEeecCCC--------------------ccEEEeCCcccCCcchHHHHhhhhhccHHHH
Q 018241 136 SQGEGLGNKFLSHIREVDSILQVVRCFED--------------------NDIVHVNGKVDPKSDVDVINLELVFSDLDQI 195 (359)
Q Consensus 136 ~~~~~~~~~~l~~i~~aD~il~Vvd~~~~--------------------~~v~~v~nk~d~~~~~~~i~~el~~~d~~~l 195 (359)
. .....++.+|++++|+|.++. .+++.+.||+|...+... .. ..
T Consensus 71 ~-------~~~~~~~~~~~~i~v~d~~~~~~s~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~-~~--------~~ 134 (184)
T 2zej_A 71 S-------THPHFMTQRALYLAVYDLSKGQAEVDAMKPWLFNIKARASSSPVILVGTHLDVSDEKQR-KA--------CM 134 (184)
T ss_dssp T-------TSHHHHHHSEEEEEEEEGGGCHHHHHTHHHHHHHHHHHCTTCEEEEEEECGGGCCHHHH-HH--------HH
T ss_pred H-------hhHHHccCCcEEEEEEeCCcchhHHHHHHHHHHHHHhhCCCCcEEEEEECCCcccchhh-HH--------HH
Confidence 2 123446789999999998763 246778899997643221 10 00
Q ss_pred HHHHHHHhhhc--c----ccccchhhHH-HHHHHHHHHHHHhcC
Q 018241 196 EKRMEKLKKGK--A----KDSQSKLKED-AEKAALEKIQQALMD 232 (359)
Q Consensus 196 ~~~~~~~~~~~--~----~~~~Sa~~~~-~~~~ll~~i~~~L~~ 232 (359)
......+.... . ...+||+.+. ++.++++.+.+.+.+
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~~~~~l~~~i~~~~~~ 178 (184)
T 2zej_A 135 SKITKELLNKRGFPAIRDYHFVNATEESDALAKLRKTIINESLN 178 (184)
T ss_dssp HHHHHHTTTCTTSCEEEEEEECCTTSCCHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhcCCcchhheEEEecccCchhHHHHHHHHHHHHhc
Confidence 11111111111 1 1457899884 899999999888764
No 174
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.27 E-value=1.7e-11 Score=107.01 Aligned_cols=142 Identities=19% Similarity=0.139 Sum_probs=86.4
Q ss_pred CcEEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCCcCCC
Q 018241 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA 135 (359)
Q Consensus 56 ~~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~~~~ 135 (359)
.++|+|+|.+|||||||+|+|++.... ....|..+.+...+.+.+.+.. ..+.+|||||..+..
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~~~~-~~~~~t~~~~~~~~~i~~~g~~---------------~~~~i~Dt~g~~~~~ 92 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRNEFN-LESKSTIGVEFATRSIQVDGKT---------------IKAQIWDTAGLERYR 92 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSCCC-CSCCCCCSEEEEEEEEEETTEE---------------EEEEEEEECSCCSSS
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCCCC-CCCCCccceEEEEEEEEECCEE---------------EEEEEEECCCCcchh
Confidence 479999999999999999999965443 3344545555667777765421 346789999986543
Q ss_pred CcCcchhhhHhhHHHhcccceEEeecCC--------------------CccEEEeCCcccCCcchHHHHhhhhhccHHHH
Q 018241 136 SQGEGLGNKFLSHIREVDSILQVVRCFE--------------------DNDIVHVNGKVDPKSDVDVINLELVFSDLDQI 195 (359)
Q Consensus 136 ~~~~~~~~~~l~~i~~aD~il~Vvd~~~--------------------~~~v~~v~nk~d~~~~~~~i~~el~~~d~~~l 195 (359)
. ......+.+|++++|+|..+ ..+++.+.||+|....... ..+..
T Consensus 93 ~-------~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~--------~~~~a 157 (191)
T 1oix_A 93 A-------ITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAV--------PTDEA 157 (191)
T ss_dssp C-------CCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCS--------CHHHH
T ss_pred h-------hhHHHhhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccccccccc--------CHHHH
Confidence 3 22334567899999998653 1246677788775321100 00111
Q ss_pred HHHHHHHhhhccccccchhhHHHHHHHHHHHHHHh
Q 018241 196 EKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQAL 230 (359)
Q Consensus 196 ~~~~~~~~~~~~~~~~Sa~~~~~~~~ll~~i~~~L 230 (359)
.. +..-... ....+|++++.++.++++.+.+.+
T Consensus 158 ~~-l~~~~~~-~~ld~Sald~~~v~~l~~~l~~~i 190 (191)
T 1oix_A 158 RA-FAEKNGL-SFIETSALDSTNVEAAFQTILTEI 190 (191)
T ss_dssp HH-HHHHTTC-EEEECCTTTCTTHHHHHHHHHHHH
T ss_pred HH-HHHHcCC-EEEEEeCCCCCCHHHHHHHHHHHh
Confidence 11 1110010 113467788888888887776654
No 175
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.27 E-value=9.8e-12 Score=107.96 Aligned_cols=82 Identities=21% Similarity=0.263 Sum_probs=52.4
Q ss_pred cCCcEEEEEecCCCChhHHHHHHHhccccc--cCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCC
Q 018241 54 SMSLRAGIVGLPNVGKSTLFNAVVENGKAQ--AANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGL 131 (359)
Q Consensus 54 ~~~~~i~ivG~pn~GKSTL~n~L~~~~~~~--~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~ 131 (359)
...++|+++|.+|||||||+|+|++..... ++..|.+|.+. ....+.+|||||.
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~~~~~------------------------~~~~~~l~Dt~G~ 101 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY------------------------DGSGVTLVDFPGH 101 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHSSCC------------CC------------------------CCTTCSEEEETTC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCceeeee------------------------cCCeEEEEECCCC
Confidence 356899999999999999999999654321 12222222111 1356899999999
Q ss_pred cCCCCcCcchhhhHhhHHHhcccceEEeecC
Q 018241 132 VKGASQGEGLGNKFLSHIREVDSILQVVRCF 162 (359)
Q Consensus 132 ~~~~~~~~~~~~~~l~~i~~aD~il~Vvd~~ 162 (359)
...... +...+...+..+|++++|+|++
T Consensus 102 ~~~~~~---~~~~~~~~~~~~~~~i~v~d~~ 129 (193)
T 2ged_A 102 VKLRYK---LSDYLKTRAKFVKGLIFMVDST 129 (193)
T ss_dssp CBSSCC---HHHHHHHHGGGEEEEEEEEETT
T ss_pred chHHHH---HHHHHHhhcccCCEEEEEEECC
Confidence 765431 2222233345699999999997
No 176
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.26 E-value=6.4e-12 Score=123.16 Aligned_cols=165 Identities=18% Similarity=0.145 Sum_probs=88.6
Q ss_pred CCcEEEEEecCCCChhHHHHHHHhcccc--ccCCCCceeccceeEEEEeCCC-cc-chhcccccc---ccc-cCceEEEE
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVVENGKA--QAANFPFCTIEPNVGIVAVPDP-RL-HVLSGLSKS---QKA-VPASVEFV 126 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~~~~~~--~~~~~p~tT~~~~~g~~~~~~~-r~-~~l~~~~~~---~~~-~~~~i~lv 126 (359)
..++|+++|++|+|||||+|+|+|.... .....++.|++.......+... .. .+......+ .+. ....+.||
T Consensus 7 ~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~ii 86 (408)
T 1s0u_A 7 AEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVSFV 86 (408)
T ss_dssp CCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEEEE
T ss_pred CceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEEEE
Confidence 4589999999999999999999954322 1223356676554333322100 00 000000000 000 01579999
Q ss_pred ecCCCcCCCCcCcchhhhHhhHHHhcccceEEeecCCC------------------ccEEEeCCcccCCcchHHHHhhhh
Q 018241 127 DIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFED------------------NDIVHVNGKVDPKSDVDVINLELV 188 (359)
Q Consensus 127 DtpG~~~~~~~~~~~~~~~l~~i~~aD~il~Vvd~~~~------------------~~v~~v~nk~d~~~~~~~i~~el~ 188 (359)
||||..++ ...+...+..+|++++|+|+.+. .+++.+.||+|....... .
T Consensus 87 DtPGh~~f-------~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~l~~~~iivv~NK~Dl~~~~~~-~---- 154 (408)
T 1s0u_A 87 DSPGHETL-------MATMLSGASLMDGAILVIAANEPCPQPQTKEHLMALEILGIDKIIIVQNKIDLVDEKQA-E---- 154 (408)
T ss_dssp ECSSHHHH-------HHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHHHHHTTCCCEEEEEECTTSSCTTTT-T----
T ss_pred ECCCHHHH-------HHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHHHHHcCCCeEEEEEEccCCCCHHHH-H----
Confidence 99997432 23455556778999999999853 247889999997643211 0
Q ss_pred hccHHHHHHHHHHHh-hhccccccchhhHHHHHHHHHHHHHHhcC
Q 018241 189 FSDLDQIEKRMEKLK-KGKAKDSQSKLKEDAEKAALEKIQQALMD 232 (359)
Q Consensus 189 ~~d~~~l~~~~~~~~-~~~~~~~~Sa~~~~~~~~ll~~i~~~L~~ 232 (359)
...+.+.+.+.... ......++||+.+.++.++++.+.+.++.
T Consensus 155 -~~~~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~i~~ 198 (408)
T 1s0u_A 155 -ENYEQIKEFVKGTIAENAPIIPISAHHEANIDVLLKAIQDFIPT 198 (408)
T ss_dssp -THHHHHHHHHTTSTTTTCCEEEC------CHHHHHHHHHHHSCC
T ss_pred -HHHHHHHHHHhhcCCCCCeEEEeeCCCCCCHHHHHHHHHHhCCC
Confidence 01111222111100 01112578999999999999999988853
No 177
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.24 E-value=8.9e-12 Score=123.13 Aligned_cols=112 Identities=17% Similarity=0.067 Sum_probs=66.0
Q ss_pred CCcEEEEEecCCCChhHHHHHHHhccccc----------cCCCCceeccceeEEEEeCCCccchhc----------cccc
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQ----------AANFPFCTIEPNVGIVAVPDPRLHVLS----------GLSK 114 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~~~~~~~----------~~~~p~tT~~~~~g~~~~~~~r~~~l~----------~~~~ 114 (359)
..++|+++|++|+|||||+|+|++..... .+..+++|.+...... .+|.+. -.+.
T Consensus 23 ~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~-----~~d~~~~E~~rGiTi~~~~~ 97 (434)
T 1zun_B 23 EMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLAL-----LVDGLQAEREQGITIDVAYR 97 (434)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHH-----HHHHHHC-----CCCCCEEE
T ss_pred CceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhh-----hhccChhHHHCCcEEEeeee
Confidence 34799999999999999999999654322 1223344321110000 000000 0000
Q ss_pred cccccCceEEEEecCCCcCCCCcCcchhhhHhhHHHhcccceEEeecCCC-----------------ccEEEeCCcccCC
Q 018241 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFED-----------------NDIVHVNGKVDPK 177 (359)
Q Consensus 115 ~~~~~~~~i~lvDtpG~~~~~~~~~~~~~~~l~~i~~aD~il~Vvd~~~~-----------------~~v~~v~nk~d~~ 177 (359)
........+.||||||..++. ......++.+|++++|+|+.+. ++++.+.||+|..
T Consensus 98 ~~~~~~~~~~iiDtpGh~~f~-------~~~~~~~~~aD~~ilVvDa~~g~~~qt~~~l~~~~~~~~~~iIvviNK~Dl~ 170 (434)
T 1zun_B 98 YFSTAKRKFIIADTPGHEQYT-------RNMATGASTCDLAIILVDARYGVQTQTRRHSYIASLLGIKHIVVAINKMDLN 170 (434)
T ss_dssp EEECSSEEEEEEECCCSGGGH-------HHHHHHHTTCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEEECTTTT
T ss_pred EeecCCceEEEEECCChHHHH-------HHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEEcCcCC
Confidence 001113579999999975432 3455677999999999999873 2478899999976
Q ss_pred c
Q 018241 178 S 178 (359)
Q Consensus 178 ~ 178 (359)
.
T Consensus 171 ~ 171 (434)
T 1zun_B 171 G 171 (434)
T ss_dssp T
T ss_pred c
Confidence 4
No 178
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=99.24 E-value=6.5e-12 Score=121.52 Aligned_cols=103 Identities=17% Similarity=0.179 Sum_probs=71.3
Q ss_pred CcEEEEEecCCCChhHHHHHHHhcc------ccccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecC
Q 018241 56 SLRAGIVGLPNVGKSTLFNAVVENG------KAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIA 129 (359)
Q Consensus 56 ~~~i~ivG~pn~GKSTL~n~L~~~~------~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtp 129 (359)
..+|+++|.||+|||||+|+|++.. .+.++++|+||++..... ++ ..+.++|||
T Consensus 160 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~~~~--~~------------------~~~~liDtP 219 (368)
T 3h2y_A 160 GKDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDIP--LD------------------EESSLYDTP 219 (368)
T ss_dssp TSCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEEEEE--SS------------------SSCEEEECC
T ss_pred cceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecceEEEE--ec------------------CCeEEEeCC
Confidence 4689999999999999999999753 455789999998776543 22 238999999
Q ss_pred CCcCCCCcCcchhhhHhhH---HHhcccceEEeecCC----------------CccEEEeCCcccCCc
Q 018241 130 GLVKGASQGEGLGNKFLSH---IREVDSILQVVRCFE----------------DNDIVHVNGKVDPKS 178 (359)
Q Consensus 130 G~~~~~~~~~~~~~~~l~~---i~~aD~il~Vvd~~~----------------~~~v~~v~nk~d~~~ 178 (359)
|+.......+.+....+.. ....+.++++++... ..+++.+.||.|++.
T Consensus 220 G~~~~~~~~~~l~~~~l~~~~~~~~i~~~~~~l~~~~~~~~g~l~~~d~l~~~~~~~~~v~nk~d~~~ 287 (368)
T 3h2y_A 220 GIINHHQMAHYVGKQSLKLITPTKEIKPMVFQLNEEQTLFFSGLARFDYVSGGRRAFTCHFSNRLTIH 287 (368)
T ss_dssp CBCCTTSGGGGSCHHHHHHHSCSSCCCCEEEEECTTEEEEETTTEEEEEEESSSEEEEEEECTTSCEE
T ss_pred CcCcHHHHHHHhhHHHHHHhccccccCceEEEEcCCCEEEEcceEEEEEecCCCceEEEEecCccccc
Confidence 9986654344444455544 366788899998732 235677888888763
No 179
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=99.23 E-value=3.4e-12 Score=119.13 Aligned_cols=63 Identities=33% Similarity=0.466 Sum_probs=41.0
Q ss_pred cCCcEEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCCcC
Q 018241 54 SMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVK 133 (359)
Q Consensus 54 ~~~~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~~ 133 (359)
...++|+++|.||||||||+|+|+|...+.+++.||+|++... +..+ ..+.++||||+..
T Consensus 118 ~~~~~v~~vG~~nvGKSsliN~l~~~~~~~~~~~~g~T~~~~~--~~~~------------------~~~~l~DtpG~~~ 177 (282)
T 1puj_A 118 PRAIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQQW--VKVG------------------KELELLDTPGILW 177 (282)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTSCCC------------CC--EEET------------------TTEEEEECCCCCC
T ss_pred CCCceEEEEecCCCchHHHHHHHhcCceeecCCCCCeeeeeEE--EEeC------------------CCEEEEECcCcCC
Confidence 4568999999999999999999998888999999999987753 2222 3599999999976
Q ss_pred CCC
Q 018241 134 GAS 136 (359)
Q Consensus 134 ~~~ 136 (359)
...
T Consensus 178 ~~~ 180 (282)
T 1puj_A 178 PKF 180 (282)
T ss_dssp SCC
T ss_pred CCC
Confidence 543
No 180
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.22 E-value=2.2e-11 Score=108.06 Aligned_cols=95 Identities=21% Similarity=0.258 Sum_probs=65.0
Q ss_pred cCCcEEEEEecCCCChhHHHHHHHhcccccc--CCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCC
Q 018241 54 SMSLRAGIVGLPNVGKSTLFNAVVENGKAQA--ANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGL 131 (359)
Q Consensus 54 ~~~~~i~ivG~pn~GKSTL~n~L~~~~~~~~--~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~ 131 (359)
...++|+++|.+|||||||+|+|++...... +..|.++.+. ....+.+|||||+
T Consensus 10 ~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~------------------------~~~~~~l~Dt~G~ 65 (218)
T 1nrj_B 10 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY------------------------DGSGVTLVDFPGH 65 (218)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEETTG------------------------GGSSCEEEECCCC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEEEEe------------------------eCceEEEEECCCc
Confidence 3568999999999999999999996543221 1222222111 1346999999999
Q ss_pred cCCCCcCcchhhhHhhHHHh----cccceEEeecC-C------------------------CccEEEeCCcccCCcc
Q 018241 132 VKGASQGEGLGNKFLSHIRE----VDSILQVVRCF-E------------------------DNDIVHVNGKVDPKSD 179 (359)
Q Consensus 132 ~~~~~~~~~~~~~~l~~i~~----aD~il~Vvd~~-~------------------------~~~v~~v~nk~d~~~~ 179 (359)
..... .....++. +|++++|+|++ + +.+++.+.||+|....
T Consensus 66 ~~~~~-------~~~~~~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 135 (218)
T 1nrj_B 66 VKLRY-------KLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTA 135 (218)
T ss_dssp GGGTH-------HHHHHHHHHGGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTC
T ss_pred HHHHH-------HHHHHHHhccccCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhccc
Confidence 64432 23333444 89999999998 2 2347889999997654
No 181
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=99.22 E-value=1.4e-11 Score=126.16 Aligned_cols=113 Identities=17% Similarity=0.103 Sum_probs=68.8
Q ss_pred CCcEEEEEecCCCChhHHHHHHHhccccccCCCC-ceeccceeEEEEeCCCccchhcccc-cc--ccccCceEEEEecCC
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFP-FCTIEPNVGIVAVPDPRLHVLSGLS-KS--QKAVPASVEFVDIAG 130 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p-~tT~~~~~g~~~~~~~r~~~l~~~~-~~--~~~~~~~i~lvDtpG 130 (359)
..++|+|+|++|+|||||+|+|++..... ..| +.|.+.....+.... ........ .. .......+.||||||
T Consensus 4 r~~~V~IvGh~d~GKTTLl~~L~~~~v~~--~e~ggiT~~ig~~~~~~~~--~~~~~~~~~~~~~v~~~~~~i~liDTPG 79 (594)
T 1g7s_A 4 RSPIVSVLGHVDHGKTTLLDHIRGSAVAS--REAGGITQHIGATEIPMDV--IEGICGDFLKKFSIRETLPGLFFIDTPG 79 (594)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHHHSC--C----CCCBTTEEEEEHHH--HHHHSCGGGGGCGGGGTCCEEEEECCCT
T ss_pred CCcEEEEECCCCCcHHHHHHHHhcccCcc--ccCCceecccCeEEEeech--hhhhccccccccccccccCCEEEEECCC
Confidence 45799999999999999999999654321 222 444332222221110 00000000 00 001123599999999
Q ss_pred CcCCCCcCcchhhhHhhHHHhcccceEEeecCC----------------CccEEEeCCcccCCc
Q 018241 131 LVKGASQGEGLGNKFLSHIREVDSILQVVRCFE----------------DNDIVHVNGKVDPKS 178 (359)
Q Consensus 131 ~~~~~~~~~~~~~~~l~~i~~aD~il~Vvd~~~----------------~~~v~~v~nk~d~~~ 178 (359)
..++... ....++.+|++++|+|+.+ +.+++.+.||+|...
T Consensus 80 he~F~~~-------~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~~l~~~~vPiIVViNKiDl~~ 136 (594)
T 1g7s_A 80 HEAFTTL-------RKRGGALADLAILIVDINEGFKPQTQEALNILRMYRTPFVVAANKIDRIH 136 (594)
T ss_dssp TSCCTTS-------BCSSSBSCSEEEEEEETTTCCCHHHHHHHHHHHHTTCCEEEEEECGGGST
T ss_pred cHHHHHH-------HHHHHhhCCEEEEEEECCCCccHhHHHHHHHHHHcCCeEEEEeccccccc
Confidence 9776542 2234577999999999988 236899999999764
No 182
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=99.21 E-value=2.4e-11 Score=116.77 Aligned_cols=162 Identities=15% Similarity=0.152 Sum_probs=84.8
Q ss_pred CCcEEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEe-CC-------------Cccch-----------h
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAV-PD-------------PRLHV-----------L 109 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~-~~-------------~r~~~-----------l 109 (359)
..++|++||.||||||||+|+|+|........ ..+|..|..-.+.. +. ..++. +
T Consensus 30 ~~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~-~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~i 108 (353)
T 2x2e_A 30 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGS-GIVTRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV 108 (353)
T ss_dssp CCCEEEEECBTTSSHHHHHHTTTTSCCSCCCS-SSCCCSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHhCCCcCCCCC-CcccccceEEEEEcCCccceeeeecCCcccCCHHHHHHHHHHHHHHh
Confidence 45799999999999999999999766542111 12333332111110 00 00110 0
Q ss_pred c-------------cccccccccCceEEEEecCCCcCCCCc--Cc----chhhhHhhHHHh-cccceEEeecCCC-----
Q 018241 110 S-------------GLSKSQKAVPASVEFVDIAGLVKGASQ--GE----GLGNKFLSHIRE-VDSILQVVRCFED----- 164 (359)
Q Consensus 110 ~-------------~~~~~~~~~~~~i~lvDtpG~~~~~~~--~~----~~~~~~l~~i~~-aD~il~Vvd~~~~----- 164 (359)
. +++.+. ..++.||||||+.+.... .+ .+......+++. ++++++|+|+..+
T Consensus 109 ~g~~~gi~~~~~~~~i~~~~---~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~ 185 (353)
T 2x2e_A 109 TGTNKGISPVPINLRVYSPH---VLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSD 185 (353)
T ss_dssp HTTTTCCCCCCEEEEEEETT---CCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCH
T ss_pred cccCCCcccCceEEEEecCC---CCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchhH
Confidence 0 001110 357999999999753321 11 222333444544 4567777787552
Q ss_pred ------------ccEEEeCCcccCCcchHHHHhhhhhccHHHHHHHHHHHh-hhccccccchhhHHHHHHHHHHHHH
Q 018241 165 ------------NDIVHVNGKVDPKSDVDVINLELVFSDLDQIEKRMEKLK-KGKAKDSQSKLKEDAEKAALEKIQQ 228 (359)
Q Consensus 165 ------------~~v~~v~nk~d~~~~~~~i~~el~~~d~~~l~~~~~~~~-~~~~~~~~Sa~~~~~~~~ll~~i~~ 228 (359)
.+++.|.||+|.......... .++.....+. .......+||+++.++.++++.+.+
T Consensus 186 ~~~i~~~~~~~~~~~i~V~NK~Dl~~~~~~~~~--------~~~~~~~~l~~~~~~v~~~SA~~~~~i~~l~~~l~~ 254 (353)
T 2x2e_A 186 ALKVAKEVDPQGQRTIGVITKLDLMDEGTDARD--------VLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA 254 (353)
T ss_dssp HHHHHHHHCTTCTTEEEEEECGGGSCTTCCCHH--------HHTTCSSCCTTCEEECCCCCHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHhCcCCCceEEEeccccccCcchhHHH--------HHhCCcccccCCceEEEeCCcccccccccHHHHHHH
Confidence 246889999997643211111 0000000000 0011146899999988888777765
No 183
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=99.19 E-value=7.7e-11 Score=113.44 Aligned_cols=121 Identities=18% Similarity=0.184 Sum_probs=74.4
Q ss_pred CCcEEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCCCccchhcc-----------------------
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSG----------------------- 111 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~----------------------- 111 (359)
.-++|++||.+|||||||+|+|+|......+ ...+|+.|..-..............
T Consensus 33 ~lp~I~vvG~~~sGKSSLln~l~g~~~lp~~-~~~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~ 111 (360)
T 3t34_A 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRG-SGIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDET 111 (360)
T ss_dssp CCCEEEEECBTTSSHHHHHHHHHTSCCSCCC-SSSCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCHHHHHHHHHHHH
T ss_pred cCCEEEEECCCCCcHHHHHHHHhCCCcCCCC-CCcccCcceEEEEecCCCcccceeeeecCCCcccCCHHHHHHHHHHHH
Confidence 3469999999999999999999975543322 2335555443332211100000000
Q ss_pred ------------------ccccccccCceEEEEecCCCcCCCCc------CcchhhhHhhHHHhcccceEEeecCC----
Q 018241 112 ------------------LSKSQKAVPASVEFVDIAGLVKGASQ------GEGLGNKFLSHIREVDSILQVVRCFE---- 163 (359)
Q Consensus 112 ------------------~~~~~~~~~~~i~lvDtpG~~~~~~~------~~~~~~~~l~~i~~aD~il~Vvd~~~---- 163 (359)
++.+. ...+.||||||+.+.... ...+...+..+++++|++++|+|+..
T Consensus 112 ~~~~g~~~~~s~~~i~l~i~~~~---~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~ 188 (360)
T 3t34_A 112 DRETGRSKAISSVPIHLSIYSPN---VVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLA 188 (360)
T ss_dssp HHTSCTTCCCCCSCEEEEEEETT---SCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGG
T ss_pred HHhcCCCCCcccceEEEEEeCCC---CCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcC
Confidence 01111 346999999999765321 12234456678899999999998643
Q ss_pred --------------CccEEEeCCcccCCcc
Q 018241 164 --------------DNDIVHVNGKVDPKSD 179 (359)
Q Consensus 164 --------------~~~v~~v~nk~d~~~~ 179 (359)
..+++.+.||+|.+..
T Consensus 189 ~~~~~~l~~~~~~~~~~~i~V~nK~Dl~~~ 218 (360)
T 3t34_A 189 TSDAIKISREVDPSGDRTFGVLTKIDLMDK 218 (360)
T ss_dssp GCHHHHHHHHSCTTCTTEEEEEECGGGCCT
T ss_pred CHHHHHHHHHhcccCCCEEEEEeCCccCCC
Confidence 1257889999997743
No 184
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=99.18 E-value=3.2e-12 Score=133.69 Aligned_cols=218 Identities=17% Similarity=0.096 Sum_probs=122.3
Q ss_pred cEEEEEecCCCChhHHHHHHHhcccc-----ccCC------------CCceeccceeEEEEeCCCccchhcccccccccc
Q 018241 57 LRAGIVGLPNVGKSTLFNAVVENGKA-----QAAN------------FPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAV 119 (359)
Q Consensus 57 ~~i~ivG~pn~GKSTL~n~L~~~~~~-----~~~~------------~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~ 119 (359)
.+|+|||+..+|||||..+|+-.... .+.. .-|.|+....-.+.+.+. ..+..
T Consensus 14 RNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~----------~~~~~ 83 (709)
T 4fn5_A 14 RNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGS----------RGQYD 83 (709)
T ss_dssp EEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCT----------TSCSC
T ss_pred eEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccC----------cCCCC
Confidence 48999999999999999999722111 1110 001122222222222111 01122
Q ss_pred CceEEEEecCCCcCCCCcCcchhhhHhhHHHhcccceEEeecCCCc----------------cEEEeCCcccCCcchHHH
Q 018241 120 PASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDN----------------DIVHVNGKVDPKSDVDVI 183 (359)
Q Consensus 120 ~~~i~lvDtpG~~~~~~~~~~~~~~~l~~i~~aD~il~Vvd~~~~~----------------~v~~v~nk~d~~~~~~~i 183 (359)
+..|+|+||||.+++.. +...+++-+|.+|+|||+.+.. +.+.++||+|-.
T Consensus 84 ~~~iNlIDTPGHvDF~~-------Ev~~aLr~~DgavlvVDaveGV~~qT~~v~~~a~~~~lp~i~~iNKiDr~------ 150 (709)
T 4fn5_A 84 NYRVNVIDTPGHVDFTI-------EVERSLRVLDGAVVVFCGTSGVEPQSETVWRQANKYGVPRIVYVNKMDRQ------ 150 (709)
T ss_dssp CEEEEEECCCSCTTCHH-------HHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHHTCCEEEEEECSSST------
T ss_pred CEEEEEEeCCCCcccHH-------HHHHHHHHhCeEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEcccccc------
Confidence 46799999999999877 8888999999999999997642 345556666632
Q ss_pred HhhhhhccHHHHHHHHHHHhhhccccccchhhHHHHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHH-HHhhhhcCCeEE
Q 018241 184 NLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMDGKPARSVTLNDFERDSIK-QLCLLTMKPIIY 262 (359)
Q Consensus 184 ~~el~~~d~~~l~~~~~~~~~~~~~~~~Sa~~~~~~~~ll~~i~~~L~~~~~~~~~~~t~~~~e~i~-~~~~l~~kp~~y 262 (359)
+.+...+++.+.+.|. ....+.+++....+.+. .+++...+.+.|
T Consensus 151 --------------------------------~a~~~~~~~ei~~~l~--~~~~~~~~pi~~~~~~~g~vd~~~~~~~~~ 196 (709)
T 4fn5_A 151 --------------------------------GANFLRVVEQIKKRLG--HTPVPVQLAIGAEENFVGQVDLIKMKAIYW 196 (709)
T ss_dssp --------------------------------TCCHHHHHHHHHHHHC--SCEEESEEEESSSTTCCEEEETTTTEEEEE
T ss_pred --------------------------------CccHHHHHHHhhhhcc--cceeeeecccCchhccceEEEEeeeeEEEe
Confidence 1122233444444442 11111111100000011 122333343333
Q ss_pred EEeC-----CCcccCCCCCChhHHHHHHHHHhcCCeEEEeeHHHHHHHcCCCHHHHHHHHHHcCCCCchHHHHHHHHHHh
Q 018241 263 VANV-----AESDLADPGSNPHVNEVMNLASDLQSGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSL 337 (359)
Q Consensus 263 ~~nv-----~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~sa~le~~l~~l~~~~~~~~l~~~~~~~~~l~~li~~~~~~ 337 (359)
.-+. ...+++ ..+.+..+.+... +-+.+++.+++..+.|+++..+....+...++.....
T Consensus 197 ~~~~~g~~~~~~~~~----~~~~~~~~~~~~~-----------~~e~~~~~d~~l~~~~~~~~~~~~~~~~~~l~~~~~~ 261 (709)
T 4fn5_A 197 NDDDKGMTYREEEIP----AELKDLAEEWRSS-----------MVEAAAEANEELMNKYLEEGELSEAEIKEGLRLRTLA 261 (709)
T ss_dssp EC--CCCEEEECCCC----HHHHHHHHHHHHH-----------HHHHHHTSSHHHHHHHHHHSCCCHHHHHHHHHHHHHT
T ss_pred ecccCCceecccccc----HHHHHHHHHHHHH-----------HHHHHHhccHHHHHHHHhcCCccHHHHHHHHHHhhhh
Confidence 2111 011121 2344444444332 5667888888889999999999988898888888888
Q ss_pred cCCeEEecC
Q 018241 338 LGLRTYFTS 346 (359)
Q Consensus 338 L~li~ffT~ 346 (359)
..+.++|-.
T Consensus 262 ~~~~pv~~g 270 (709)
T 4fn5_A 262 CEIVPAVCG 270 (709)
T ss_dssp TSCEEEEEC
T ss_pred ceeeeeeee
Confidence 888888763
No 185
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=99.18 E-value=4.7e-11 Score=114.88 Aligned_cols=161 Identities=17% Similarity=0.149 Sum_probs=88.1
Q ss_pred cCCcEEEEEecCCCChhHHHHHHHhc------cccccCCCCceeccceeEEEEeCCCccchhc-----------------
Q 018241 54 SMSLRAGIVGLPNVGKSTLFNAVVEN------GKAQAANFPFCTIEPNVGIVAVPDPRLHVLS----------------- 110 (359)
Q Consensus 54 ~~~~~i~ivG~pn~GKSTL~n~L~~~------~~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~----------------- 110 (359)
...+.|+|+|.||||||||+|+|+.. ..+.+...|+++. ..|.+.-...+...+.
T Consensus 77 ~~~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~~Dp~~~~--~~g~~l~d~~~~~~~~~~~~~~i~~~~~~~~~~ 154 (355)
T 3p32_A 77 GNAHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLAVDPSSTR--TGGSILGDKTRMARLAVHPNAYIRPSPTSGTLG 154 (355)
T ss_dssp CCSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEEC------------------CHHHHTCTTEEEECCC--CCHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEecCCCCCc--ccchhccchhhHHhhccCCCeeEEECCCCcccc
Confidence 35679999999999999999999732 2222222222221 0010000000110000
Q ss_pred -------cccccccccCceEEEEecCCCcCCCCcCcchhhhHhhHHHhcccceEEeecCCC------------ccEEEeC
Q 018241 111 -------GLSKSQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFED------------NDIVHVN 171 (359)
Q Consensus 111 -------~~~~~~~~~~~~i~lvDtpG~~~~~~~~~~~~~~~l~~i~~aD~il~Vvd~~~~------------~~v~~v~ 171 (359)
.........+..+.||||||+.. .....+..+|++++|+|+... .+++.+.
T Consensus 155 ~~~~~t~d~i~~~~~~~~~~iiiDTpGi~~----------~~~~~~~~aD~vl~V~d~~~~~~~~~l~~~~~~~p~ivVl 224 (355)
T 3p32_A 155 GVTRATRETVVLLEAAGFDVILIETVGVGQ----------SEVAVANMVDTFVLLTLARTGDQLQGIKKGVLELADIVVV 224 (355)
T ss_dssp HHHHHHHHHHHHHHHTTCCEEEEEECSCSS----------HHHHHHTTCSEEEEEEESSTTCTTTTCCTTSGGGCSEEEE
T ss_pred chhHHHHHHHHHHhhCCCCEEEEeCCCCCc----------HHHHHHHhCCEEEEEECCCCCccHHHHHHhHhhcCCEEEE
Confidence 00000112356799999999742 222335889999999997653 2568899
Q ss_pred CcccCCcchHHHHhhhhhccHHHHHHHHHHHhh-----hccccccchhhHHHHHHHHHHHHHHhcC
Q 018241 172 GKVDPKSDVDVINLELVFSDLDQIEKRMEKLKK-----GKAKDSQSKLKEDAEKAALEKIQQALMD 232 (359)
Q Consensus 172 nk~d~~~~~~~i~~el~~~d~~~l~~~~~~~~~-----~~~~~~~Sa~~~~~~~~ll~~i~~~L~~ 232 (359)
||+|....... .. ....+...+..+.. ......+||+++.++.++++.+.++++.
T Consensus 225 NK~Dl~~~~~~-~~-----~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~~~~ 284 (355)
T 3p32_A 225 NKADGEHHKEA-RL-----AARELSAAIRLIYPREALWRPPVLTMSAVEGRGLAELWDTVERHRQV 284 (355)
T ss_dssp ECCCGGGHHHH-HH-----HHHHHHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHHHHHHHHHHH
T ss_pred ECCCCcChhHH-HH-----HHHHHHHHHhhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 99997532211 10 11122222222210 0111568999999999999999998864
No 186
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=99.15 E-value=3.8e-11 Score=129.18 Aligned_cols=148 Identities=16% Similarity=0.141 Sum_probs=88.2
Q ss_pred CCcEEEEEecCCCChhHHHHHHHhccc--ccc-------------CCCCceeccceeEEEEeCCCccchhcccccccccc
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVVENGK--AQA-------------ANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAV 119 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~~~~~--~~~-------------~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~ 119 (359)
..++|+++|++|+|||||+|+|++... ... ....|.|++.....+...
T Consensus 295 ~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~----------------- 357 (1289)
T 3avx_A 295 PHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTP----------------- 357 (1289)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECS-----------------
T ss_pred CeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCC-----------------
Confidence 347999999999999999999995311 000 012333433322212111
Q ss_pred CceEEEEecCCCcCCCCcCcchhhhHhhHHHhcccceEEeecCCC----------------cc-EEEeCCcccCCcchHH
Q 018241 120 PASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFED----------------ND-IVHVNGKVDPKSDVDV 182 (359)
Q Consensus 120 ~~~i~lvDtpG~~~~~~~~~~~~~~~l~~i~~aD~il~Vvd~~~~----------------~~-v~~v~nk~d~~~~~~~ 182 (359)
...+.||||||..++. ......++.+|++++|||+.+. .+ ++.+.||+|...+.+.
T Consensus 358 ~~kI~IIDTPGHedF~-------~~mi~gas~AD~aILVVDAtdGv~~QTrEhL~ll~~lgIP~IIVVINKiDLv~d~e~ 430 (1289)
T 3avx_A 358 TRHYAHVDCPGHADYV-------KNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQVGVPYIIVFLNKCDMVDDEEL 430 (1289)
T ss_dssp SCEEEEEECCCHHHHH-------HHHHHTSCCCSEEEEEEETTTCSCTTHHHHHHHHHHHTCSCEEEEEECCTTCCCHHH
T ss_pred CEEEEEEECCChHHHH-------HHHHHHHhhCCEEEEEEcCCccCcHHHHHHHHHHHHcCCCeEEEEEeecccccchhh
Confidence 3579999999986432 2445567889999999999873 23 6788999998753322
Q ss_pred HHhhhhhccHHHHHHHHHHHhh---hccccccchhhH--------HHHHHHHHHHHHHhc
Q 018241 183 INLELVFSDLDQIEKRMEKLKK---GKAKDSQSKLKE--------DAEKAALEKIQQALM 231 (359)
Q Consensus 183 i~~el~~~d~~~l~~~~~~~~~---~~~~~~~Sa~~~--------~~~~~ll~~i~~~L~ 231 (359)
++. + . +.+...+....- .....++||+.+ .++.++++.+.+.++
T Consensus 431 le~-i-~---eEi~elLk~~G~~~~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~~Ip 485 (1289)
T 3avx_A 431 LEL-V-E---MEVRELLSQYDFPGDDTPIVRGSALKALEGDAEWEAKILELAGFLDSYIP 485 (1289)
T ss_dssp HHH-H-H---HHHHHHHHHTTSCTTTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHHTSC
T ss_pred HHH-H-H---HHHHHHHHhccccccceeEEEEEeccCCCCCccccccchhhHhHHhhhcC
Confidence 110 0 0 111222222110 111256788887 578888888888775
No 187
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=99.14 E-value=5.1e-11 Score=114.05 Aligned_cols=161 Identities=20% Similarity=0.184 Sum_probs=86.9
Q ss_pred ccCCcEEEEEecCCCChhHHHHHHHh------ccccccCCCCceeccceeEEEEeCCCccchh---cc------------
Q 018241 53 ISMSLRAGIVGLPNVGKSTLFNAVVE------NGKAQAANFPFCTIEPNVGIVAVPDPRLHVL---SG------------ 111 (359)
Q Consensus 53 ~~~~~~i~ivG~pn~GKSTL~n~L~~------~~~~~~~~~p~tT~~~~~g~~~~~~~r~~~l---~~------------ 111 (359)
......|+++|+||+|||||+|+|++ .....++..|++|.. .|.+-....+...+ ..
T Consensus 53 ~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~~~~~~--~~~il~d~~~~~~~~~~~~~~i~~~~~~~~l 130 (341)
T 2p67_A 53 CGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSSPVT--GGSILGDKTRMNDLARAEAAFIRPVPSSGHL 130 (341)
T ss_dssp CSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC-----------------CTTTTCTTEEEEEECC----
T ss_pred cCCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecCCcCCC--CcceecccchHHhhccCCCceeecCcccccc
Confidence 34568999999999999999999974 233444445555421 11110000000000 00
Q ss_pred ---------ccccccccCceEEEEecCCCcCCCCcCcchhhhHhhHHHhcccceEEeecCCCc------------cEEEe
Q 018241 112 ---------LSKSQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDN------------DIVHV 170 (359)
Q Consensus 112 ---------~~~~~~~~~~~i~lvDtpG~~~~~~~~~~~~~~~l~~i~~aD~il~Vvd~~~~~------------~v~~v 170 (359)
......+.+.++.|+||||+.+... ...+.+|++++|+|++... +.+.+
T Consensus 131 ~g~~~~~~~~~~~~~~~~~~i~liDTpG~~~~~~----------~~~~~aD~vl~Vvd~~~~~~~~~l~~~~~~~p~ivv 200 (341)
T 2p67_A 131 GGASQRARELMLLCEAAGYDVVIVETVGVGQSET----------EVARMVDCFISLQIAGGGDDLQGIKKGLMEVADLIV 200 (341)
T ss_dssp -CHHHHHHHHHHHHHHTTCSEEEEEEECCTTHHH----------HHHTTCSEEEEEECC------CCCCHHHHHHCSEEE
T ss_pred chhHHHHHHHHHHhhccCCCEEEEeCCCccchHH----------HHHHhCCEEEEEEeCCccHHHHHHHHhhhcccCEEE
Confidence 0000012356799999999864221 1347899999999986421 35778
Q ss_pred CCcccCCcchHHHHhhhhhccHHHHHHHHHHHhh-----hccccccchhhHHHHHHHHHHHHHHhc
Q 018241 171 NGKVDPKSDVDVINLELVFSDLDQIEKRMEKLKK-----GKAKDSQSKLKEDAEKAALEKIQQALM 231 (359)
Q Consensus 171 ~nk~d~~~~~~~i~~el~~~d~~~l~~~~~~~~~-----~~~~~~~Sa~~~~~~~~ll~~i~~~L~ 231 (359)
.||+|....... .. ..+.+...+..+.. .....++||+++.++.++++.+.+.+.
T Consensus 201 ~NK~Dl~~~~~~-~~-----~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~~l~~~~~ 260 (341)
T 2p67_A 201 INKDDGDNHTNV-AI-----ARHMYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKT 260 (341)
T ss_dssp ECCCCTTCHHHH-HH-----HHHHHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHH
T ss_pred EECCCCCChHHH-HH-----HHHHHHHHHHhccccccCCCCcEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 899997643211 10 00111221111110 011147899999999999988887764
No 188
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=99.14 E-value=9.4e-11 Score=118.52 Aligned_cols=99 Identities=21% Similarity=0.230 Sum_probs=67.4
Q ss_pred CcEEEEEecCCCChhHHHHHHHhccccc--c-------------C------CCCceeccceeEEEEeCCCccchhccccc
Q 018241 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQ--A-------------A------NFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114 (359)
Q Consensus 56 ~~~i~ivG~pn~GKSTL~n~L~~~~~~~--~-------------~------~~p~tT~~~~~g~~~~~~~r~~~l~~~~~ 114 (359)
..+|+|+|++|+|||||+|+|++..... . . ...+.|+......+.+.
T Consensus 13 ~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~------------ 80 (529)
T 2h5e_A 13 RRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYH------------ 80 (529)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEET------------
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEEC------------
Confidence 4799999999999999999999532211 0 0 01222222222222222
Q ss_pred cccccCceEEEEecCCCcCCCCcCcchhhhHhhHHHhcccceEEeecCCC----------------ccEEEeCCcccCCc
Q 018241 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFED----------------NDIVHVNGKVDPKS 178 (359)
Q Consensus 115 ~~~~~~~~i~lvDtpG~~~~~~~~~~~~~~~l~~i~~aD~il~Vvd~~~~----------------~~v~~v~nk~d~~~ 178 (359)
+..+.||||||..++.. .+...++.+|++++|+|+.+. .+++.+.||+|...
T Consensus 81 -----~~~i~liDTPG~~df~~-------~~~~~l~~aD~~IlVvDa~~g~~~~t~~~~~~~~~~~ipiivviNK~Dl~~ 148 (529)
T 2h5e_A 81 -----DCLVNLLDTPGHEDFSE-------DTYRTLTAVDCCLMVIDAAKGVEDRTRKLMEVTRLRDTPILTFMNKLDRDI 148 (529)
T ss_dssp -----TEEEEEECCCCSTTCCH-------HHHHGGGGCSEEEEEEETTTCSCHHHHHHHHHHTTTTCCEEEEEECTTSCC
T ss_pred -----CeEEEEEECCCChhHHH-------HHHHHHHHCCEEEEEEeCCccchHHHHHHHHHHHHcCCCEEEEEcCcCCcc
Confidence 46799999999976554 566778999999999999873 35788999999764
No 189
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=99.13 E-value=1.6e-11 Score=123.04 Aligned_cols=145 Identities=18% Similarity=0.125 Sum_probs=93.6
Q ss_pred CCcEEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCCcCC
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~~~ 134 (359)
.+++|+++|++|+|||||+++|++. ....+..++.|.+.....+.++ +..+.||||||..++
T Consensus 3 R~~~V~IvGhvd~GKTTLl~~L~~~-~v~~~e~~GIT~~i~~~~v~~~-----------------~~~i~~iDTPGhe~f 64 (501)
T 1zo1_I 3 RAPVVTIMGHVDHGKTSLLEYIRST-KVASGEAGGITQHIGAYHVETE-----------------NGMITFLDTPGHAAF 64 (501)
T ss_dssp CCCCEEEEESTTSSSHHHHHHHHHH-HHSBTTBCCCCCCSSCCCCCTT-----------------SSCCCEECCCTTTCC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcC-CCccccCCCeeEeEEEEEEEEC-----------------CEEEEEEECCCcHHH
Confidence 5689999999999999999999954 3334455667755443332222 346899999998766
Q ss_pred CCcCcchhhhHhhHHHhcccceEEeecCCC----------------ccEEEeCCcccCCc-chHHHHhhhhhccHHHHHH
Q 018241 135 ASQGEGLGNKFLSHIREVDSILQVVRCFED----------------NDIVHVNGKVDPKS-DVDVINLELVFSDLDQIEK 197 (359)
Q Consensus 135 ~~~~~~~~~~~l~~i~~aD~il~Vvd~~~~----------------~~v~~v~nk~d~~~-~~~~i~~el~~~d~~~l~~ 197 (359)
.. .....++.+|++++|+|+.+. .+++.+.||+|... +.+.+..++..... +.
T Consensus 65 ~~-------~~~~~~~~aD~aILVVda~~g~~~qT~e~l~~~~~~~vPiIVviNKiDl~~~~~~~v~~~l~~~~~--~~- 134 (501)
T 1zo1_I 65 TS-------MRARGAQATDIVVLVVAADDGVMPQTIEAIQHAKAAQVPVVVAVNKIDKPEADPDRVKNELSQYGI--LP- 134 (501)
T ss_dssp TT-------SBCSSSBSCSSEEEEEETTTBSCTTTHHHHHHHHHTTCCEEEEEECSSSSTTCCCCTTCCCCCCCC--CT-
T ss_pred HH-------HHHHHHhhCCEEEEEeecccCccHHHHHHHHHHHhcCceEEEEEEeccccccCHHHHHHHHHHhhh--hH-
Confidence 54 223445789999999998762 36889999999753 12222222211110 00
Q ss_pred HHHHHhhhccccccchhhHHHHHHHHHHHHHH
Q 018241 198 RMEKLKKGKAKDSQSKLKEDAEKAALEKIQQA 229 (359)
Q Consensus 198 ~~~~~~~~~~~~~~Sa~~~~~~~~ll~~i~~~ 229 (359)
+.+.......++||+++.++.++++.+...
T Consensus 135 --~~~~~~~~~v~vSAktG~gI~eLle~I~~~ 164 (501)
T 1zo1_I 135 --EEWGGESQFVHVSAKAGTGIDELLDAILLQ 164 (501)
T ss_dssp --TCCSSSCEEEECCTTTCTTCTTHHHHTTTT
T ss_pred --HHhCCCccEEEEeeeeccCcchhhhhhhhh
Confidence 000000112578999999999999887643
No 190
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=99.11 E-value=1.7e-09 Score=112.22 Aligned_cols=47 Identities=15% Similarity=0.032 Sum_probs=39.1
Q ss_pred HHHHHcCCCHHHHHHHHHHcCCCCchHHHHHHHHHHhcCCeEEecCC
Q 018241 301 VEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSG 347 (359)
Q Consensus 301 le~~l~~l~~~~~~~~l~~~~~~~~~l~~li~~~~~~L~li~ffT~g 347 (359)
+-+.+++.|++..++|+++..++...+...++..+....+++||..+
T Consensus 208 l~e~~~~~d~~l~e~~l~~~~l~~~~~~~~~~~~~~~~~~~pv~~~S 254 (665)
T 2dy1_A 208 VLEAIVETDEGLLEKYLEGEEVTGEALEKAFHEAVRRGLLYPVALAS 254 (665)
T ss_dssp HHHHHHTTCHHHHHHHHHTCCCCHHHHHHHHHHHHHTTSCEEEEECB
T ss_pred HHHHHHhCCHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCeeEEEEee
Confidence 45568888888899999998898888888888888888888988643
No 191
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=99.10 E-value=2.5e-11 Score=120.77 Aligned_cols=98 Identities=14% Similarity=0.157 Sum_probs=69.2
Q ss_pred CcEEEEEecCCCChhHHHHHHHhccccc------------------------cCC------CCceeccceeEEEEeCCCc
Q 018241 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQ------------------------AAN------FPFCTIEPNVGIVAVPDPR 105 (359)
Q Consensus 56 ~~~i~ivG~pn~GKSTL~n~L~~~~~~~------------------------~~~------~p~tT~~~~~g~~~~~~~r 105 (359)
.++|+++|++|+|||||+|+|++..... +.+ ..+.|++.....+..+
T Consensus 7 ~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~~--- 83 (458)
T 1f60_A 7 HINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETP--- 83 (458)
T ss_dssp EEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECS---
T ss_pred eeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEecC---
Confidence 4799999999999999999998541100 000 1455665554444333
Q ss_pred cchhccccccccccCceEEEEecCCCcCCCCcCcchhhhHhhHHHhcccceEEeecCCC---------------------
Q 018241 106 LHVLSGLSKSQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFED--------------------- 164 (359)
Q Consensus 106 ~~~l~~~~~~~~~~~~~i~lvDtpG~~~~~~~~~~~~~~~l~~i~~aD~il~Vvd~~~~--------------------- 164 (359)
..++.||||||..+ +.......++.+|++++|+|+.+.
T Consensus 84 --------------~~~~~iiDtPGh~~-------f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~ 142 (458)
T 1f60_A 84 --------------KYQVTVIDAPGHRD-------FIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFT 142 (458)
T ss_dssp --------------SEEEEEEECCCCTT-------HHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHH
T ss_pred --------------CceEEEEECCCcHH-------HHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHH
Confidence 35799999999753 233556667899999999999742
Q ss_pred --c-cEEEeCCcccCC
Q 018241 165 --N-DIVHVNGKVDPK 177 (359)
Q Consensus 165 --~-~v~~v~nk~d~~ 177 (359)
. +++.+.||+|..
T Consensus 143 ~~v~~iivviNK~Dl~ 158 (458)
T 1f60_A 143 LGVRQLIVAVNKMDSV 158 (458)
T ss_dssp TTCCEEEEEEECGGGG
T ss_pred cCCCeEEEEEEccccc
Confidence 1 377889999976
No 192
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=99.09 E-value=4.2e-11 Score=118.30 Aligned_cols=99 Identities=16% Similarity=0.151 Sum_probs=65.7
Q ss_pred CcEEEEEecCCCChhHHHHHHHhccccc------------------------------cCCCCceeccceeEEEEeCCCc
Q 018241 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQ------------------------------AANFPFCTIEPNVGIVAVPDPR 105 (359)
Q Consensus 56 ~~~i~ivG~pn~GKSTL~n~L~~~~~~~------------------------------~~~~p~tT~~~~~g~~~~~~~r 105 (359)
.++|+++|++|+|||||+|+|++..... ....+++|++.....+..+
T Consensus 6 ~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~~--- 82 (435)
T 1jny_A 6 HLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETK--- 82 (435)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECS---
T ss_pred EEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEecC---
Confidence 4799999999999999999998541110 0013456655554444333
Q ss_pred cchhccccccccccCceEEEEecCCCcCCCCcCcchhhhHhhHHHhcccceEEeecCCC---------------------
Q 018241 106 LHVLSGLSKSQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFED--------------------- 164 (359)
Q Consensus 106 ~~~l~~~~~~~~~~~~~i~lvDtpG~~~~~~~~~~~~~~~l~~i~~aD~il~Vvd~~~~--------------------- 164 (359)
...+.||||||..++.. .....++.+|++++|+|+.+.
T Consensus 83 --------------~~~~~iiDtpG~~~f~~-------~~~~~~~~aD~~ilVvDa~~gsfe~~~~~~~qt~~~~~~~~~ 141 (435)
T 1jny_A 83 --------------KYFFTIIDAPGHRDFVK-------NMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKT 141 (435)
T ss_dssp --------------SCEEEECCCSSSTTHHH-------HHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHHH
T ss_pred --------------CeEEEEEECCCcHHHHH-------HHHhhhhhcCEEEEEEECCCCccccccccchHHHHHHHHHHH
Confidence 35799999999865432 456677899999999999874
Q ss_pred ---ccEEEeCCcccCCc
Q 018241 165 ---NDIVHVNGKVDPKS 178 (359)
Q Consensus 165 ---~~v~~v~nk~d~~~ 178 (359)
++++.+.||+|...
T Consensus 142 ~~~~~iivviNK~Dl~~ 158 (435)
T 1jny_A 142 MGLDQLIVAVNKMDLTE 158 (435)
T ss_dssp TTCTTCEEEEECGGGSS
T ss_pred cCCCeEEEEEEcccCCC
Confidence 23678899999764
No 193
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.06 E-value=3.2e-10 Score=109.31 Aligned_cols=30 Identities=27% Similarity=0.334 Sum_probs=24.3
Q ss_pred ccCCcEEEEEecCCCChhHHHHHHHhcccc
Q 018241 53 ISMSLRAGIVGLPNVGKSTLFNAVVENGKA 82 (359)
Q Consensus 53 ~~~~~~i~ivG~pn~GKSTL~n~L~~~~~~ 82 (359)
....++|+|+|.+|+|||||+|+|++....
T Consensus 34 ~~~~~~I~vvG~~g~GKSTLln~L~~~~~~ 63 (361)
T 2qag_A 34 KGFEFTLMVVGESGLGKSTLINSLFLTDLY 63 (361)
T ss_dssp HCCEECEEECCCTTSCHHHHHHHHTTCCC-
T ss_pred CCCCEEEEEEcCCCCCHHHHHHHHhCCCCC
Confidence 344589999999999999999999855433
No 194
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=99.05 E-value=8.8e-11 Score=107.65 Aligned_cols=70 Identities=19% Similarity=0.076 Sum_probs=44.0
Q ss_pred hcccceEEeecCCC-----------------------ccEEEeCCcccCCcchHHHHhhhhhccHHHHHHHHHHHhhhcc
Q 018241 151 EVDSILQVVRCFED-----------------------NDIVHVNGKVDPKSDVDVINLELVFSDLDQIEKRMEKLKKGKA 207 (359)
Q Consensus 151 ~aD~il~Vvd~~~~-----------------------~~v~~v~nk~d~~~~~~~i~~el~~~d~~~l~~~~~~~~~~~~ 207 (359)
+||++++|+|+++. .+++.+.||+|...+... . .... +..-.....
T Consensus 162 ~ad~vilV~D~t~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v--~--------~~~~-~~~~~~~~~ 230 (255)
T 3c5h_A 162 LVDGFLLGIDVSRGMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVERYI--R--------DAHT-FALSKKNLQ 230 (255)
T ss_dssp ECCEEEEEEECBC----CHHHHHHHHHHHHHHHHHTTCCEEEEEECGGGBCHHHH--H--------HHHH-HHHTSSSCC
T ss_pred cCCEEEEEEECCCCchhhHHHHHHHHHHHHHHhccCCCCEEEEEEcccccccHHH--H--------HHHH-HHHhcCCCe
Confidence 69999999998763 247889999996533211 1 1111 111000111
Q ss_pred ccccchhhHHHHHHHHHHHHHHhc
Q 018241 208 KDSQSKLKEDAEKAALEKIQQALM 231 (359)
Q Consensus 208 ~~~~Sa~~~~~~~~ll~~i~~~L~ 231 (359)
...+||+.+.++.++++.+.+.+.
T Consensus 231 ~~e~SAk~g~gv~elf~~l~~~l~ 254 (255)
T 3c5h_A 231 VVETSARSNVNVDLAFSTLVQLID 254 (255)
T ss_dssp EEECBTTTTBSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Confidence 146799999999999998887663
No 195
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=99.00 E-value=5.6e-10 Score=101.87 Aligned_cols=173 Identities=13% Similarity=0.038 Sum_probs=93.1
Q ss_pred CcEEEEEecCCCChhHHHHHHH-----hccccccCCCCceeccceeEEEEeCCC-ccch-hc------------------
Q 018241 56 SLRAGIVGLPNVGKSTLFNAVV-----ENGKAQAANFPFCTIEPNVGIVAVPDP-RLHV-LS------------------ 110 (359)
Q Consensus 56 ~~~i~ivG~pn~GKSTL~n~L~-----~~~~~~~~~~p~tT~~~~~g~~~~~~~-r~~~-l~------------------ 110 (359)
...+.++|++|||||||++.|. |.....+..-|+.+.-.........+- .... +.
T Consensus 14 ~~i~~~~GkgGvGKTTl~~~La~~l~~g~~v~vvd~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (262)
T 1yrb_A 14 SMIVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVNLDTGVKELPYEPSIDVREFVTVEEIMREGYGPNGAIVESYDRLME 93 (262)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHTTTSCEEEEECCSSCSCCSSCCSEEGGGTCCHHHHHTTTCCHHHHHHHHHHHHHT
T ss_pred eEEEEEeCCCCCCHHHHHHHHHHHHHCCCeEEEEeCCCCccccCCCCCCChhhcccHHHHhhccCCCCCcEEecHHHHhh
Confidence 4678899999999999999998 555555554444321100000000000 0000 00
Q ss_pred ------cccccccccCceEEEEecCCCcCCCCcCcchhhhHhhHHHhcccceEEeecCC---------------------
Q 018241 111 ------GLSKSQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFE--------------------- 163 (359)
Q Consensus 111 ------~~~~~~~~~~~~i~lvDtpG~~~~~~~~~~~~~~~l~~i~~aD~il~Vvd~~~--------------------- 163 (359)
+.+...+ ....+.||||||..+..... .++..+...+.+ +++++|+|+..
T Consensus 94 ~~~~l~~~l~~~~-~~~d~iiiDtpG~~~~~~~~-~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~ 170 (262)
T 1yrb_A 94 KFNEYLNKILRLE-KENDYVLIDTPGQMETFLFH-EFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLIDLRL 170 (262)
T ss_dssp THHHHHHHHHHHH-HHCSEEEEECCSSHHHHHHS-HHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHh-hcCCEEEEeCCCccchhhhh-hhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHhccc
Confidence 0000000 12479999999996443211 123334445566 89999999753
Q ss_pred CccEEEeCCcccCCcchHH--HHhhhhhccHHHHHHHH------------------HHHhhhccccccchhhHHHHHHHH
Q 018241 164 DNDIVHVNGKVDPKSDVDV--INLELVFSDLDQIEKRM------------------EKLKKGKAKDSQSKLKEDAEKAAL 223 (359)
Q Consensus 164 ~~~v~~v~nk~d~~~~~~~--i~~el~~~d~~~l~~~~------------------~~~~~~~~~~~~Sa~~~~~~~~ll 223 (359)
+.+++.+.||+|.....+. +... +.+.+.+...+ ..+........+||+.+.++.+++
T Consensus 171 ~~p~~iv~NK~D~~~~~~~~~~~~~--l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SA~~~~gi~~l~ 248 (262)
T 1yrb_A 171 GATTIPALNKVDLLSEEEKERHRKY--FEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLE 248 (262)
T ss_dssp TSCEEEEECCGGGCCHHHHHHHHHH--HHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHH
T ss_pred CCCeEEEEecccccccccHHHHHHH--HhChHHHHHHHhccccccchhHhHHHHHHHHhcCcccceEEEecCcccHHHHH
Confidence 2356789999998754321 1211 11222111111 111111122567899999999999
Q ss_pred HHHHHHhcCC
Q 018241 224 EKIQQALMDG 233 (359)
Q Consensus 224 ~~i~~~L~~~ 233 (359)
+.+.+.++.+
T Consensus 249 ~~i~~~~~~~ 258 (262)
T 1yrb_A 249 TLAYEHYCTC 258 (262)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHhccc
Confidence 9998888654
No 196
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=98.99 E-value=4.5e-10 Score=119.47 Aligned_cols=112 Identities=21% Similarity=0.187 Sum_probs=70.0
Q ss_pred CcEEEEEecCCCChhHHHHHHHhccccccCCCC---------------ceeccceeEEEEeCCCc--cchhccccccccc
Q 018241 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFP---------------FCTIEPNVGIVAVPDPR--LHVLSGLSKSQKA 118 (359)
Q Consensus 56 ~~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p---------------~tT~~~~~g~~~~~~~r--~~~l~~~~~~~~~ 118 (359)
..+|+|+|++|+|||||+|+|++......+..+ +.|+......+.+.... ...+.. ....
T Consensus 19 ~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~---~~~~ 95 (842)
T 1n0u_A 19 VRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQ---KTDG 95 (842)
T ss_dssp EEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSS---CCCS
T ss_pred ccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccc---cccC
Confidence 369999999999999999999965333322222 22333332222221000 000000 0011
Q ss_pred cCceEEEEecCCCcCCCCcCcchhhhHhhHHHhcccceEEeecCCC----------------ccEEEeCCcccCC
Q 018241 119 VPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFED----------------NDIVHVNGKVDPK 177 (359)
Q Consensus 119 ~~~~i~lvDtpG~~~~~~~~~~~~~~~l~~i~~aD~il~Vvd~~~~----------------~~v~~v~nk~d~~ 177 (359)
.+..+.||||||..++.. .+...++.+|++++|+|+.+. .+++.+.||+|..
T Consensus 96 ~~~~i~liDTPG~~df~~-------~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~~p~ilviNK~D~~ 163 (842)
T 1n0u_A 96 NSFLINLIDSPGHVDFSS-------EVTAALRVTDGALVVVDTIEGVCVQTETVLRQALGERIKPVVVINKVDRA 163 (842)
T ss_dssp SEEEEEEECCCCCCSSCH-------HHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHHHTTCEEEEEEECHHHH
T ss_pred CCceEEEEECcCchhhHH-------HHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCeEEEEECCCcc
Confidence 135799999999987665 667788999999999999873 2467788888854
No 197
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=98.98 E-value=2.8e-10 Score=113.43 Aligned_cols=99 Identities=17% Similarity=0.121 Sum_probs=58.2
Q ss_pred CCcEEEEEecCCCChhHHHHHHHhccccc------------------------cCC------CCceeccceeEEEEeCCC
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQ------------------------AAN------FPFCTIEPNVGIVAVPDP 104 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~~~~~~~------------------------~~~------~p~tT~~~~~g~~~~~~~ 104 (359)
..++|+++|++|+|||||+|+|+...... +.+ ..+.|++.....+..+
T Consensus 42 ~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~~-- 119 (467)
T 1r5b_A 42 EHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETE-- 119 (467)
T ss_dssp EEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECS--
T ss_pred CeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEecC--
Confidence 34799999999999999999997422110 000 1234443333233222
Q ss_pred ccchhccccccccccCceEEEEecCCCcCCCCcCcchhhhHhhHHHhcccceEEeecCCC--------------------
Q 018241 105 RLHVLSGLSKSQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFED-------------------- 164 (359)
Q Consensus 105 r~~~l~~~~~~~~~~~~~i~lvDtpG~~~~~~~~~~~~~~~l~~i~~aD~il~Vvd~~~~-------------------- 164 (359)
+.++.||||||..++.. .....++.+|++++|+|+.+.
T Consensus 120 ---------------~~~~~iiDtPGh~~f~~-------~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~ 177 (467)
T 1r5b_A 120 ---------------HRRFSLLDAPGHKGYVT-------NMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLAR 177 (467)
T ss_dssp ---------------SEEEEECCCCC------------------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHH
T ss_pred ---------------CeEEEEEECCCcHHHHH-------HHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHH
Confidence 35799999999976543 445566889999999999864
Q ss_pred ---cc-EEEeCCcccCC
Q 018241 165 ---ND-IVHVNGKVDPK 177 (359)
Q Consensus 165 ---~~-v~~v~nk~d~~ 177 (359)
.+ ++.+.||+|..
T Consensus 178 ~~~vp~iivviNK~Dl~ 194 (467)
T 1r5b_A 178 TQGINHLVVVINKMDEP 194 (467)
T ss_dssp HTTCSSEEEEEECTTST
T ss_pred HcCCCEEEEEEECccCC
Confidence 12 67899999975
No 198
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=98.97 E-value=7.4e-10 Score=98.39 Aligned_cols=157 Identities=12% Similarity=0.077 Sum_probs=86.6
Q ss_pred CCcEEEEEecCCCChhHHHHHHHhcc-----ccccCCCCceeccce------eEEEEeCCCc-----cchhccccccccc
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVVENG-----KAQAANFPFCTIEPN------VGIVAVPDPR-----LHVLSGLSKSQKA 118 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~~~~-----~~~~~~~p~tT~~~~------~g~~~~~~~r-----~~~l~~~~~~~~~ 118 (359)
..++|+++|++|||||||+|+|++.. .+.+...+++|.+.. ...+.++..- .+.+.+... ..
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 106 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVSKADYERVRRFGIKAEAISTGKECHLDAHMIYHRLK--KF 106 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCCCHHHHHHHHTTTCEEEECCCTTCSSCCHHHHHTTGG--GG
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCCCchhHHHHHhCCCcEEEecCCceeecccHHHHHHHH--hc
Confidence 45799999999999999999999542 223334444433221 0111111100 000111111 22
Q ss_pred cCceEEEEecCCCcCCCCcCcchhhhHhhHHHhcccceEEeecCCC------------ccEEEeCCcccCCcchHHHHhh
Q 018241 119 VPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFED------------NDIVHVNGKVDPKSDVDVINLE 186 (359)
Q Consensus 119 ~~~~i~lvDtpG~~~~~~~~~~~~~~~l~~i~~aD~il~Vvd~~~~------------~~v~~v~nk~d~~~~~~~i~~e 186 (359)
....+.+|||||...... ... ..++.+++|+|+... .+++.+.||+|......
T Consensus 107 ~~~d~iiidt~G~~~~~~--------~~~--~~~~~~i~vvd~~~~~~~~~~~~~~~~~~~iiv~NK~Dl~~~~~----- 171 (221)
T 2wsm_A 107 SDCDLLLIENVGNLICPV--------DFD--LGENYRVVMVSVTEGDDVVEKHPEIFRVADLIVINKVALAEAVG----- 171 (221)
T ss_dssp TTCSEEEEEEEEBSSGGG--------GCC--CSCSEEEEEEEGGGCTTHHHHCHHHHHTCSEEEEECGGGHHHHT-----
T ss_pred CCCCEEEEeCCCCCCCCc--------hhc--cccCcEEEEEeCCCcchhhhhhhhhhhcCCEEEEecccCCcchh-----
Confidence 346799999999621111 000 135778899997653 24678889999642110
Q ss_pred hhhccHHHHHHHHHHHhhhccccccchhhHHHHHHHHHHHHHHhc
Q 018241 187 LVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALM 231 (359)
Q Consensus 187 l~~~d~~~l~~~~~~~~~~~~~~~~Sa~~~~~~~~ll~~i~~~L~ 231 (359)
.+.+.+...+..+........+||+++.++.++++.+.+.+.
T Consensus 172 ---~~~~~~~~~~~~~~~~~~i~~~Sa~~g~gi~~l~~~l~~~~~ 213 (221)
T 2wsm_A 172 ---ADVEKMKADAKLINPRAKIIEMDLKTGKGFEEWIDFLRGILN 213 (221)
T ss_dssp ---CCHHHHHHHHHHHCTTSEEEECBTTTTBTHHHHHHHHHHHHC
T ss_pred ---hHHHHHHHHHHHhCCCCeEEEeecCCCCCHHHHHHHHHHHHH
Confidence 011222222222211112256799999999999999988874
No 199
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.92 E-value=5.7e-10 Score=102.86 Aligned_cols=59 Identities=27% Similarity=0.365 Sum_probs=39.4
Q ss_pred cEEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCCcCCC
Q 018241 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA 135 (359)
Q Consensus 57 ~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~~~~ 135 (359)
.+++++|.||+|||||+|+|+|...+.+++.||+|+.... +.. +..+.++||||+....
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~~~~~~~g~T~~~~~--~~~------------------~~~~~l~DtpG~~~~~ 158 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRASSVGAQPGITKGIQW--FSL------------------ENGVKILDTPGILYKN 158 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC----------CCSCE--EEC------------------TTSCEEESSCEECCCC
T ss_pred hheEEeCCCCCCHHHHHHHHhcccccccCCCCCCccceEE--EEe------------------CCCEEEEECCCcccCc
Confidence 6999999999999999999998777788999999976542 222 2358999999998654
No 200
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=98.91 E-value=2.7e-09 Score=108.32 Aligned_cols=97 Identities=20% Similarity=0.220 Sum_probs=69.4
Q ss_pred cEEEEEecCCCChhHHHHHHHhccccc---------------cCC------CCceeccceeEEEEeCCCccchhcccccc
Q 018241 57 LRAGIVGLPNVGKSTLFNAVVENGKAQ---------------AAN------FPFCTIEPNVGIVAVPDPRLHVLSGLSKS 115 (359)
Q Consensus 57 ~~i~ivG~pn~GKSTL~n~L~~~~~~~---------------~~~------~p~tT~~~~~g~~~~~~~r~~~l~~~~~~ 115 (359)
.+|||||+..+|||||..+|+-...+. +.+ .-|.|+......+.+
T Consensus 32 RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~-------------- 97 (548)
T 3vqt_A 32 RTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPY-------------- 97 (548)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEE--------------
T ss_pred ceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEE--------------
Confidence 489999999999999999997211110 001 112233333333333
Q ss_pred ccccCceEEEEecCCCcCCCCcCcchhhhHhhHHHhcccceEEeecCCC----------------ccEEEeCCcccCC
Q 018241 116 QKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFED----------------NDIVHVNGKVDPK 177 (359)
Q Consensus 116 ~~~~~~~i~lvDtpG~~~~~~~~~~~~~~~l~~i~~aD~il~Vvd~~~~----------------~~v~~v~nk~d~~ 177 (359)
.+..|+|+||||.+++.. ...+.++.+|.+|+||||.+. .+.+.++||+|..
T Consensus 98 ---~~~~iNlIDTPGHvDF~~-------Ev~raL~~~DgAvlVvda~~GV~~qT~~v~~~a~~~~lp~i~fINK~Dr~ 165 (548)
T 3vqt_A 98 ---RDRVVNLLDTPGHQDFSE-------DTYRVLTAVDSALVVIDAAKGVEAQTRKLMDVCRMRATPVMTFVNKMDRE 165 (548)
T ss_dssp ---TTEEEEEECCCCGGGCSH-------HHHHHHHSCSEEEEEEETTTBSCHHHHHHHHHHHHTTCCEEEEEECTTSC
T ss_pred ---CCEEEEEEeCCCcHHHHH-------HHHHHHHhcCceEEEeecCCCcccccHHHHHHHHHhCCceEEEEecccch
Confidence 357899999999999987 888999999999999999884 3578899999964
No 201
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=98.89 E-value=6.4e-09 Score=99.28 Aligned_cols=162 Identities=19% Similarity=0.132 Sum_probs=84.5
Q ss_pred ccCCcEEEEEecCCCChhHHHHHHHh------ccccccCCCCceeccceeEEEEeCCCccchhcc---ccc---------
Q 018241 53 ISMSLRAGIVGLPNVGKSTLFNAVVE------NGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSG---LSK--------- 114 (359)
Q Consensus 53 ~~~~~~i~ivG~pn~GKSTL~n~L~~------~~~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~---~~~--------- 114 (359)
...+..++|+|+||||||||+|+|+| +.....+..++++... +.+.-...+..++.+ .+-
T Consensus 52 ~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~~~~~--~~~~~~~~~i~~v~q~~~~~~~~~~~~~~l 129 (337)
T 2qm8_A 52 TGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTG--GSILGDKTRMARLAIDRNAFIRPSPSSGTL 129 (337)
T ss_dssp CCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSC--CCSSCCGGGSTTGGGCTTEEEECCCCCSSH
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcccccc--cchHHHhhhheeeccCcccccccCcccccc
Confidence 34567999999999999999999984 2332233333322110 000000000111100 000
Q ss_pred ------------cccccCceEEEEecCCCcCCCCcCcchhhhHhhHHHhcccceEEeecCCCc------------cEEEe
Q 018241 115 ------------SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDN------------DIVHV 170 (359)
Q Consensus 115 ------------~~~~~~~~i~lvDtpG~~~~~~~~~~~~~~~l~~i~~aD~il~Vvd~~~~~------------~v~~v 170 (359)
.....+.++.|+||||+.+... .....+|++++|+|+...+ +.+.+
T Consensus 130 ~G~tr~~~e~~~~~~~~~~~~iliDT~Gi~~~~~----------~v~~~~d~vl~v~d~~~~~~~~~i~~~i~~~~~ivv 199 (337)
T 2qm8_A 130 GGVAAKTRETMLLCEAAGFDVILVETVGVGQSET----------AVADLTDFFLVLMLPGAGDELQGIKKGIFELADMIA 199 (337)
T ss_dssp HHHHHHHHHHHHHHHHTTCCEEEEEECSSSSCHH----------HHHTTSSEEEEEECSCC------CCTTHHHHCSEEE
T ss_pred cchHHHHHHHHHHHhcCCCCEEEEECCCCCcchh----------hHHhhCCEEEEEEcCCCcccHHHHHHHHhccccEEE
Confidence 0111256899999999964311 1236799999999875321 23456
Q ss_pred CCcccCCcchHHHHhhhhhccHHHHHHHHHHHhh-----hccccccchhhHHHHHHHHHHHHHHhc
Q 018241 171 NGKVDPKSDVDVINLELVFSDLDQIEKRMEKLKK-----GKAKDSQSKLKEDAEKAALEKIQQALM 231 (359)
Q Consensus 171 ~nk~d~~~~~~~i~~el~~~d~~~l~~~~~~~~~-----~~~~~~~Sa~~~~~~~~ll~~i~~~L~ 231 (359)
+||+|.......... ....+...+..+.. ..+...+||+++.++.++++.+.++++
T Consensus 200 lNK~Dl~~~~~~s~~-----~~~~l~~a~~l~~~~~~~~~~~vl~~Sal~g~gi~~L~~~I~~~~~ 260 (337)
T 2qm8_A 200 VNKADDGDGERRASA-----AASEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRS 260 (337)
T ss_dssp EECCSTTCCHHHHHH-----HHHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred EEchhccCchhHHHH-----HHHHHHHHHHhccccccCCCCCEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 689885432221110 00111111110110 011145789999999999988888775
No 202
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=98.88 E-value=3.4e-09 Score=107.98 Aligned_cols=68 Identities=25% Similarity=0.214 Sum_probs=48.8
Q ss_pred CCcEEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCCcCC
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~~~ 134 (359)
....|+|+|.||||||||+|+|+|...+. +++++|++.+.|.+.+..+ .+ ...+..+.|+||||+...
T Consensus 37 ~~~~VaivG~pnvGKStLiN~L~g~~~~~--~~~~tt~~~T~gi~~~~~~---------~~-~~~~~~i~LiDTpGi~~~ 104 (592)
T 1f5n_A 37 PMVVVAIVGLYRTGKSYLMNKLAGKKKGF--SLGSTVQSHTKGIWMWCVP---------HP-KKPGHILVLLDTEGLGDV 104 (592)
T ss_dssp BEEEEEEEEBTTSSHHHHHHHHTTCSSCS--CCCCSSSCCCCSEEEEEEE---------CS-SSTTCEEEEEEECCBCCG
T ss_pred CCcEEEEECCCCCCHHHHHHhHcCCCCcc--ccCCCCCCceeEEEEeecc---------cc-cCCCceEEEecCCCcCcc
Confidence 44789999999999999999999765432 6788888877777643100 00 001457999999999753
No 203
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=98.83 E-value=8e-09 Score=97.85 Aligned_cols=100 Identities=16% Similarity=0.215 Sum_probs=65.5
Q ss_pred EEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCCcCCCCc
Q 018241 58 RAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGASQ 137 (359)
Q Consensus 58 ~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~~~~~~ 137 (359)
||.++|..|||||||++.+.++-........+.|.......+ .. ..++++|||||..++...
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~v--~~----------------~v~LqIWDTAGQErf~~~ 62 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEHF--ST----------------LIDLAVMELPGQLNYFEP 62 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEEE--CS----------------SSCEEEEECCSCSSSCCC
T ss_pred CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEEE--cc----------------EEEEEEEECCCchhccch
Confidence 689999999999999999884322211111223332222221 10 256999999999876420
Q ss_pred CcchhhhHhhHHHhcccceEEeecCCC---------------------ccEEEeCCcccCCcc
Q 018241 138 GEGLGNKFLSHIREVDSILQVVRCFED---------------------NDIVHVNGKVDPKSD 179 (359)
Q Consensus 138 ~~~~~~~~l~~i~~aD~il~Vvd~~~~---------------------~~v~~v~nk~d~~~~ 179 (359)
.+ ......++|+++++|+|+.+. .+++.+.||+|...+
T Consensus 63 --~l--~~~~yyr~a~~~IlV~Ditd~~~~~~~~l~~~l~~~~~~~~~ipillvgNK~DL~~~ 121 (331)
T 3r7w_B 63 --SY--DSERLFKSVGALVYVIDSQDEYINAITNLAMIIEYAYKVNPSINIEVLIHKVDGLSE 121 (331)
T ss_dssp --SH--HHHHHHTTCSEEEEECCCSSCTTHHHHHHHHHHHHHHHHCTTCEEEEECCCCCSSCS
T ss_pred --hh--hhhhhccCCCEEEEEEECCchHHHHHHHHHHHHHHHhhcCCCCcEEEEEECcccCch
Confidence 01 123456899999999998763 246789999998754
No 204
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=98.82 E-value=2e-08 Score=94.27 Aligned_cols=165 Identities=16% Similarity=0.153 Sum_probs=66.0
Q ss_pred CCcEEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCCCcCC
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG~~~~ 134 (359)
-.++|+|+|.+|||||||+|+|.|......+..++...+.... .. .....-.+.. ......+.+|||||+...
T Consensus 17 ~~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t-~~-----~~~~~~~~q~-~~~~~~ltv~Dt~g~~~~ 89 (301)
T 2qnr_A 17 FEFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERT-VQ-----IEASTVEIEE-RGVKLRLTVVDTPGYGDA 89 (301)
T ss_dssp -CEEEEEEEETTSSHHHHHHHHHC------------------------------CEEEEC----CCEEEEEEEEC-----
T ss_pred CCEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCc-ce-----EeeEEEEecC-CCcccCcchhhhhhhhhh
Confidence 4589999999999999999999864333222111100000000 00 0000000000 011356899999999432
Q ss_pred CC---cCcchhh----hHhhHHHh-------------cccceEEeecCC----------------CccEEEeCCcccCCc
Q 018241 135 AS---QGEGLGN----KFLSHIRE-------------VDSILQVVRCFE----------------DNDIVHVNGKVDPKS 178 (359)
Q Consensus 135 ~~---~~~~~~~----~~l~~i~~-------------aD~il~Vvd~~~----------------~~~v~~v~nk~d~~~ 178 (359)
.. ....+.. .+...+++ +++++++++.+. ..+++.+.||.|...
T Consensus 90 ~~~~e~~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~~~Ld~~~~~~l~~l~~~~~iilV~~K~Dl~~ 169 (301)
T 2qnr_A 90 INCRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAIHNKVNIVPVIAKADTLT 169 (301)
T ss_dssp ------CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSSSSCCHHHHHHHHHHTTTSCEEEEECCGGGSC
T ss_pred cCcHHHHHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcccCCCHHHHHHHHHHHhcCCEEEEEEeCCCCC
Confidence 11 0111221 11122222 233566655332 136788999999775
Q ss_pred chHHHHhhhhhccHHHHHHHHHHHhhhccccccchhhHHHHHHHHHHHHHHhcCCCC
Q 018241 179 DVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMDGKP 235 (359)
Q Consensus 179 ~~~~i~~el~~~d~~~l~~~~~~~~~~~~~~~~Sa~~~~~~~~ll~~i~~~L~~~~~ 235 (359)
+.+.... .+.+........ .....+||+++ ++++++..+.+.+.+..|
T Consensus 170 ~~e~~~~------~~~~~~~~~~~~--~~~~e~Sa~~~-~v~e~f~~l~~~i~~~~p 217 (301)
T 2qnr_A 170 LKERERL------KKRILDEIEEHN--IKIYHLPDAES-DEDEDFKEQTRLLKASIP 217 (301)
T ss_dssp HHHHHHH------HHHHHHHHHHTT--CCCCCCC----------CHHHHHHHHTTCS
T ss_pred HHHHHHH------HHHHHHHHHHcC--CeEEecCCccc-cccHHHHHHHHHhhcCCC
Confidence 3221100 011111111111 12246788998 899888888887765444
No 205
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=98.82 E-value=8.5e-10 Score=114.00 Aligned_cols=104 Identities=16% Similarity=0.205 Sum_probs=70.4
Q ss_pred cEEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCCCccchhcc----------ccccccccCceEEEE
Q 018241 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSG----------LSKSQKAVPASVEFV 126 (359)
Q Consensus 57 ~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~----------~~~~~~~~~~~i~lv 126 (359)
.+|||+|+..+|||||..+|+-.... ++. .|.+.-++...|+... ...+..|.+..|+|+
T Consensus 3 RNi~IiaHvD~GKTTL~e~LL~~~G~-i~~---------~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlI 72 (638)
T 3j25_A 3 INIGVLAHVDAGKTTLTESLLYNSGA-ITE---------LGSVDKGTTRTDNTLLERQRGITIQTGITSFQWENTKVNII 72 (638)
T ss_dssp CCCEEECCSTTSSHHHHHHHHHHHTC-CSS---------CSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSSCBCCCE
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHcCC-Ccc---------ccccccCCcccCCcHHHHhCCCcEEeeeEEEEECCEEEEEE
Confidence 37999999999999999999722111 110 0111111111222211 122334456789999
Q ss_pred ecCCCcCCCCcCcchhhhHhhHHHhcccceEEeecCCC----------------ccEEEeCCcccCC
Q 018241 127 DIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFED----------------NDIVHVNGKVDPK 177 (359)
Q Consensus 127 DtpG~~~~~~~~~~~~~~~l~~i~~aD~il~Vvd~~~~----------------~~v~~v~nk~d~~ 177 (359)
||||.+++.. .....++.+|.+++|||+.+. .+.+.++||+|-.
T Consensus 73 DTPGH~DF~~-------Ev~raL~~~DgavlVVDa~~GV~~qT~~v~~~a~~~~lp~i~~INKmDr~ 132 (638)
T 3j25_A 73 DTPGHMDFLA-------EVYRSLSVLDGAILLISAKDGVQAQTRILFHALRKMGIPTIFFINKIDQN 132 (638)
T ss_dssp ECCCSSSTHH-------HHHHHHTTCSEEECCEESSCTTCSHHHHHHHHHHHHTCSCEECCEECCSS
T ss_pred ECCCcHHHHH-------HHHHHHHHhCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCeEEEEeccccc
Confidence 9999998876 788899999999999999884 3568889999853
No 206
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=98.65 E-value=4.6e-08 Score=86.92 Aligned_cols=159 Identities=16% Similarity=0.188 Sum_probs=82.3
Q ss_pred CCcEEEEEecCCCChhHHHHHHHhcccc-----ccCCCCceeccce------eEEEEeCCCcc-----chhccccccccc
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVVENGKA-----QAANFPFCTIEPN------VGIVAVPDPRL-----HVLSGLSKSQKA 118 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~~~~~~-----~~~~~p~tT~~~~------~g~~~~~~~r~-----~~l~~~~~~~~~ 118 (359)
..++|+|+|.+|||||||+|+|++.... .+...++++.+.. ...+.+.+... ....+.+..-..
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ 116 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDNLKDKYKIACIAGDVIAKFDAERMEKHGAKVVPLNTGKECHLDAHLVGHALEDLNL 116 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHHHTTTCCEEEEEEETTTHHHHHHHHTTTCEEEEEECTTCSSCCHHHHHHHHTTSCG
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEECCCCCCccHHHHHhcCCcEEEecCCceEeccHHHHHHHHHHHhc
Confidence 4689999999999999999999954221 1111111111110 11222221100 001112222222
Q ss_pred cCceEEEEecCCCcCCCCcCcchhhhHhhHHHhcccceEEeecCC--CccE----------EEeCCcccCCcchHHHHhh
Q 018241 119 VPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFE--DNDI----------VHVNGKVDPKSDVDVINLE 186 (359)
Q Consensus 119 ~~~~i~lvDtpG~~~~~~~~~~~~~~~l~~i~~aD~il~Vvd~~~--~~~v----------~~v~nk~d~~~~~~~i~~e 186 (359)
....+.++|++|...... .| . ...+.++.|+|+.. +.+. +.+.||+|......
T Consensus 117 ~~~d~~~id~~g~i~~~~-------s~-~--~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~iiv~NK~Dl~~~~~----- 181 (226)
T 2hf9_A 117 DEIDLLFIENVGNLICPA-------DF-D--LGTHKRIVVISTTEGDDTIEKHPGIMKTADLIVINKIDLADAVG----- 181 (226)
T ss_dssp GGCSEEEEECCSCSSGGG-------GC-C--CSCSEEEEEEEGGGCTTTTTTCHHHHTTCSEEEEECGGGHHHHT-----
T ss_pred CCCCEEEEeCCCCccCcc-------hh-h--hccCcEEEEEecCcchhhHhhhhhHhhcCCEEEEeccccCchhH-----
Confidence 234699999999632211 11 1 12345567788543 2333 78899999653210
Q ss_pred hhhccHHHHHHHHHHHhhhccccccchhhHHHHHHHHHHHHHHhc
Q 018241 187 LVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALM 231 (359)
Q Consensus 187 l~~~d~~~l~~~~~~~~~~~~~~~~Sa~~~~~~~~ll~~i~~~L~ 231 (359)
...+.+...............+||+++.++.++++.+.+.+.
T Consensus 182 ---~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~ 223 (226)
T 2hf9_A 182 ---ADIKKMENDAKRINPDAEVVLLSLKTMEGFDKVLEFIEKSVK 223 (226)
T ss_dssp ---CCHHHHHHHHHHHCTTSEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHhCCCCeEEEEEecCCCCHHHHHHHHHHHHH
Confidence 111222222222211112246799999999999999887774
No 207
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.55 E-value=1.7e-07 Score=91.76 Aligned_cols=28 Identities=29% Similarity=0.408 Sum_probs=24.1
Q ss_pred cCCcEEEEEecCCCChhHHHHHHHhccc
Q 018241 54 SMSLRAGIVGLPNVGKSTLFNAVVENGK 81 (359)
Q Consensus 54 ~~~~~i~ivG~pn~GKSTL~n~L~~~~~ 81 (359)
.-.++|+|||.+|||||||+|+|+|...
T Consensus 29 ~vsf~I~lvG~sGaGKSTLln~L~g~~~ 56 (418)
T 2qag_C 29 GFEFTLMVVGESGLGKSTLINSLFLTDL 56 (418)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHTTCCC
T ss_pred CCCEEEEEECCCCCcHHHHHHHHhCCCC
Confidence 3457999999999999999999996554
No 208
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=98.37 E-value=3.2e-07 Score=90.42 Aligned_cols=71 Identities=15% Similarity=0.154 Sum_probs=46.7
Q ss_pred cEEEEEecCCCChhHHHHHHHhc---------------cccccCCCCceeccceeEEEEeCCCccchhccccccccccCc
Q 018241 57 LRAGIVGLPNVGKSTLFNAVVEN---------------GKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPA 121 (359)
Q Consensus 57 ~~i~ivG~pn~GKSTL~n~L~~~---------------~~~~~~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~ 121 (359)
.-|+|+|.+|+|||||+|.|.|. .....+ ..++|...+.|.+....+-. .........
T Consensus 68 ~vVsV~G~~~~GKStLLN~llg~~~~~~~~~wl~~~~~~~~~f~-~~~t~~~~T~GIw~~~~p~~------~~~~~~~~~ 140 (447)
T 3q5d_A 68 VAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFS-WRGGSERETTGIQIWSEIFL------INKPDGKKV 140 (447)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHCCSTTTSSCCTTSBCCSSC-SCCSSCCCCCEEEEESSCEE------EECSSSCEE
T ss_pred EEEEEECCCCCcHHHHHHHHhhhcccccccccccccccccceec-CCCCCCCceeEEEEecCccc------cccCCCCcc
Confidence 57999999999999999999964 222233 23377777888876542100 000001135
Q ss_pred eEEEEecCCCcCC
Q 018241 122 SVEFVDIAGLVKG 134 (359)
Q Consensus 122 ~i~lvDtpG~~~~ 134 (359)
++.|+||||+.+.
T Consensus 141 ~vvllDTeG~~~~ 153 (447)
T 3q5d_A 141 AVLLMDTQGTFDS 153 (447)
T ss_dssp EEEEEEEECCCSS
T ss_pred eEEEEcCCccccc
Confidence 7999999999654
No 209
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=98.37 E-value=9.1e-07 Score=86.46 Aligned_cols=156 Identities=18% Similarity=0.148 Sum_probs=80.1
Q ss_pred CCcEEEEEecCCCChhHHHHHHHhcccccc----CCCCceeccceeEEEEeCCCccchhccccccccccCceEEEEecCC
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQA----ANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAG 130 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~~~~~~~~----~~~p~tT~~~~~g~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG 130 (359)
....+||+|++|||||||+|+|+|...... .+...+|+. +.+. +.. ...++.++|+||
T Consensus 68 ~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~---~~v~-------------q~~--~~~~ltv~D~~g 129 (413)
T 1tq4_A 68 SVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTME---RHPY-------------KHP--NIPNVVFWDLPG 129 (413)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CC---CEEE-------------ECS--SCTTEEEEECCC
T ss_pred CCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeeccee---EEec-------------ccc--ccCCeeehHhhc
Confidence 445899999999999999999997322111 111112211 1111 110 124689999999
Q ss_pred CcCCCCcCcchhhhHhhH--HHhcccceEEeecC--C-------------CccEEEeCCcccCCcchHHHHhh----hhh
Q 018241 131 LVKGASQGEGLGNKFLSH--IREVDSILQVVRCF--E-------------DNDIVHVNGKVDPKSDVDVINLE----LVF 189 (359)
Q Consensus 131 ~~~~~~~~~~~~~~~l~~--i~~aD~il~Vvd~~--~-------------~~~v~~v~nk~d~~~~~~~i~~e----l~~ 189 (359)
+..... ....++.. +.+.|..++ ++.. . ..+++.+.|+.|.+ +.+| ++.
T Consensus 130 ~~~~~~----~~~~~L~~~~L~~~~~~~~-lS~G~~~kqrv~la~aL~~~~~p~~lV~tkpdll-----lLDEPtsgLD~ 199 (413)
T 1tq4_A 130 IGSTNF----PPDTYLEKMKFYEYDFFII-ISATRFKKNDIDIAKAISMMKKEFYFVRTKVDSD-----ITNEADGEPQT 199 (413)
T ss_dssp GGGSSC----CHHHHHHHTTGGGCSEEEE-EESSCCCHHHHHHHHHHHHTTCEEEEEECCHHHH-----HHHHHTTCCTT
T ss_pred ccchHH----HHHHHHHHcCCCccCCeEE-eCCCCccHHHHHHHHHHHhcCCCeEEEEecCccc-----ccCcccccCCH
Confidence 864321 12233332 334455444 6654 1 23466666665532 1111 111
Q ss_pred ccHHHHHHHHHHHh-----hh-c--cc-cccch--hhHHHHHHHHHHHHHHhcCCCCCCC
Q 018241 190 SDLDQIEKRMEKLK-----KG-K--AK-DSQSK--LKEDAEKAALEKIQQALMDGKPARS 238 (359)
Q Consensus 190 ~d~~~l~~~~~~~~-----~~-~--~~-~~~Sa--~~~~~~~~ll~~i~~~L~~~~~~~~ 238 (359)
.....+.+.+..+. .. . .. ..+|+ ..+.+++++.+.+.+.|+++++++.
T Consensus 200 ~~~~~l~~~l~~l~~~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I~~~Lpeg~~~~~ 259 (413)
T 1tq4_A 200 FDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKLISDLPIYKRHNF 259 (413)
T ss_dssp CCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHHHHHSCGGGHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCcCCccCHHHHHHHHHHhCccchhhHH
Confidence 11111222222221 11 0 11 34566 4455688999999999999887663
No 210
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=98.34 E-value=1.7e-07 Score=93.80 Aligned_cols=121 Identities=17% Similarity=0.127 Sum_probs=64.7
Q ss_pred CCcEEEEEecCCCChhHHHHHHH------hccccccCCCCceec----------cceeEEEEeCCCccch---hcccccc
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVV------ENGKAQAANFPFCTI----------EPNVGIVAVPDPRLHV---LSGLSKS 115 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~------~~~~~~~~~~p~tT~----------~~~~g~~~~~~~r~~~---l~~~~~~ 115 (359)
.+..|+|+|+|||||||++++|+ |.....++.-++... ......+.... ..+. +...+..
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~-~~dp~~i~~~al~~ 178 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYT-EMDPVIIASEGVEK 178 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCC-CSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCC-CCCHHHHHHHHHHH
Confidence 34689999999999999999999 544443333111100 00000111000 0010 0001111
Q ss_pred ccccCceEEEEecCCCcCCCCcCcchhhhHhh--HHHhcccceEEeecCCCc-------------cE-EEeCCcccCCcc
Q 018241 116 QKAVPASVEFVDIAGLVKGASQGEGLGNKFLS--HIREVDSILQVVRCFEDN-------------DI-VHVNGKVDPKSD 179 (359)
Q Consensus 116 ~~~~~~~i~lvDtpG~~~~~~~~~~~~~~~l~--~i~~aD~il~Vvd~~~~~-------------~v-~~v~nk~d~~~~ 179 (359)
.++.+..+.||||||...... .+...... .+..+|.+++|+|+.... ++ ..++||+|....
T Consensus 179 ~~~~~~DvvIIDTpG~~~~~~---~l~~el~~~~~~i~pd~vllVvDa~~g~~~~~~a~~~~~~~~i~gvVlNK~D~~~~ 255 (504)
T 2j37_W 179 FKNENFEIIIVDTSGRHKQED---SLFEEMLQVANAIQPDNIVYVMDASIGQACEAQAKAFKDKVDVASVIVTKLDGHAK 255 (504)
T ss_dssp HHHTTCCEEEEEECCCCTTCH---HHHHHHHHHHHHHCCSEEEEEEETTCCTTHHHHHHHHHHHHCCCCEEEECTTSCCC
T ss_pred HHHCCCcEEEEeCCCCcccch---hHHHHHHHHHhhhcCceEEEEEeccccccHHHHHHHHHhhcCceEEEEeCCccccc
Confidence 112356799999999864321 12222211 123789999999997642 33 678899987644
No 211
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=98.32 E-value=2.1e-06 Score=79.25 Aligned_cols=26 Identities=31% Similarity=0.482 Sum_probs=22.6
Q ss_pred cEEEEEecCCCChhHHHHHHHhcccc
Q 018241 57 LRAGIVGLPNVGKSTLFNAVVENGKA 82 (359)
Q Consensus 57 ~~i~ivG~pn~GKSTL~n~L~~~~~~ 82 (359)
++++|+|.+|||||||+|.|+|....
T Consensus 3 f~v~lvG~nGaGKSTLln~L~g~~~~ 28 (270)
T 3sop_A 3 FNIMVVGQSGLGKSTLVNTLFKSQVS 28 (270)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHHC-
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 68999999999999999999975443
No 212
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.30 E-value=1.3e-06 Score=85.45 Aligned_cols=24 Identities=29% Similarity=0.426 Sum_probs=21.6
Q ss_pred cEEEEEecCCCChhHHHHHHHhcc
Q 018241 57 LRAGIVGLPNVGKSTLFNAVVENG 80 (359)
Q Consensus 57 ~~i~ivG~pn~GKSTL~n~L~~~~ 80 (359)
++++|+|.+|||||||+|+|+|..
T Consensus 43 ~~vaLvG~nGaGKSTLln~L~G~~ 66 (427)
T 2qag_B 43 FNILCVGETGLGKSTLMDTLFNTK 66 (427)
T ss_dssp EEEEEECSTTSSSHHHHHHHHTSC
T ss_pred eEEEEECCCCCCHHHHHHHHhCcc
Confidence 459999999999999999999753
No 213
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=97.82 E-value=6.8e-06 Score=77.17 Aligned_cols=33 Identities=24% Similarity=0.319 Sum_probs=21.5
Q ss_pred CcEEEEEecCCCChhHHHHHHHhccccccCCCC
Q 018241 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFP 88 (359)
Q Consensus 56 ~~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p 88 (359)
+-.++|+|.+|||||||+|+|+|.....++..+
T Consensus 173 G~~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~ 205 (307)
T 1t9h_A 173 DKTTVFAGQSGVGKSSLLNAISPELGLRTNEIS 205 (307)
T ss_dssp TSEEEEEESHHHHHHHHHHHHCC----------
T ss_pred CCEEEEECCCCCCHHHHHHHhccccccccccee
Confidence 458999999999999999999966554444433
No 214
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=97.82 E-value=2e-05 Score=77.52 Aligned_cols=23 Identities=22% Similarity=0.242 Sum_probs=21.0
Q ss_pred CcEEEEEecCCCChhHHHHHHHh
Q 018241 56 SLRAGIVGLPNVGKSTLFNAVVE 78 (359)
Q Consensus 56 ~~~i~ivG~pn~GKSTL~n~L~~ 78 (359)
+..|+++|.|||||||+++.|.+
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~ 121 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLAR 121 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999985
No 215
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=97.78 E-value=1.2e-05 Score=77.09 Aligned_cols=30 Identities=27% Similarity=0.289 Sum_probs=24.5
Q ss_pred CcEEEEEecCCCChhHHHHHHHhccc-cccC
Q 018241 56 SLRAGIVGLPNVGKSTLFNAVVENGK-AQAA 85 (359)
Q Consensus 56 ~~~i~ivG~pn~GKSTL~n~L~~~~~-~~~~ 85 (359)
+-.++|+|.+|||||||+|+|+|... ...+
T Consensus 215 G~~~~lvG~sG~GKSTLln~L~g~~~~~~~G 245 (358)
T 2rcn_A 215 GRISIFAGQSGVGKSSLLNALLGLQNEILTN 245 (358)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHCCSSCCCCC
T ss_pred CCEEEEECCCCccHHHHHHHHhccccccccC
Confidence 35799999999999999999997655 4433
No 216
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=97.77 E-value=3.3e-05 Score=75.94 Aligned_cols=123 Identities=15% Similarity=0.064 Sum_probs=63.1
Q ss_pred CCcEEEEEecCCCChhHHHHHHHh------ccccccCCCCcee--------ccceeEE-EEeCCCccch---hccccccc
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVVE------NGKAQAANFPFCT--------IEPNVGI-VAVPDPRLHV---LSGLSKSQ 116 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~~------~~~~~~~~~p~tT--------~~~~~g~-~~~~~~r~~~---l~~~~~~~ 116 (359)
.+..|+++|.+||||||+++.|.. .....++.-++.. .....+. +.......+. ....+...
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a 178 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYF 178 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHH
Confidence 357899999999999999999982 2222222111100 0000010 1000000010 01111111
Q ss_pred cccCceEEEEecCCCcCCCCcCcchhhhH--hhHHHhcccceEEeecCCCc--------------cEEEeCCcccCCcch
Q 018241 117 KAVPASVEFVDIAGLVKGASQGEGLGNKF--LSHIREVDSILQVVRCFEDN--------------DIVHVNGKVDPKSDV 180 (359)
Q Consensus 117 ~~~~~~i~lvDtpG~~~~~~~~~~~~~~~--l~~i~~aD~il~Vvd~~~~~--------------~v~~v~nk~d~~~~~ 180 (359)
+..+..+.++||||...... .+.... +..+..+|.+++|+|+.... ....++||+|.....
T Consensus 179 ~~~~~DvVIIDTaGrl~~d~---~lm~el~~i~~~~~pd~vlLVvDA~~gq~a~~~a~~f~~~~~i~gVIlTKlD~~~~g 255 (443)
T 3dm5_A 179 KSKGVDIIIVDTAGRHKEDK---ALIEEMKQISNVIHPHEVILVIDGTIGQQAYNQALAFKEATPIGSIIVTKLDGSAKG 255 (443)
T ss_dssp HHTTCSEEEEECCCCSSCCH---HHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHHHHHHHHHSCTTEEEEEECCSSCSSH
T ss_pred HhCCCCEEEEECCCcccchH---HHHHHHHHHHHhhcCceEEEEEeCCCchhHHHHHHHHHhhCCCeEEEEECCCCcccc
Confidence 12246799999999753221 122221 23344578999999987632 134678888876543
No 217
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=97.73 E-value=7e-05 Score=76.77 Aligned_cols=23 Identities=22% Similarity=0.345 Sum_probs=21.3
Q ss_pred cEEEEEecCCCChhHHHHHHHhc
Q 018241 57 LRAGIVGLPNVGKSTLFNAVVEN 79 (359)
Q Consensus 57 ~~i~ivG~pn~GKSTL~n~L~~~ 79 (359)
+.|||||.+|||||||+++|+|-
T Consensus 46 p~iaIvG~nGsGKSTLL~~I~Gl 68 (608)
T 3szr_A 46 PAIAVIGDQSSGKSSVLEALSGV 68 (608)
T ss_dssp CCEECCCCTTSCHHHHHHHHHSC
T ss_pred CeEEEECCCCChHHHHHHHHhCC
Confidence 56999999999999999999965
No 218
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=97.56 E-value=9.1e-05 Score=69.22 Aligned_cols=33 Identities=15% Similarity=0.272 Sum_probs=25.3
Q ss_pred CcEEEEEecCCCChhHHHHHHHhccccccCCCCc
Q 018241 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPF 89 (359)
Q Consensus 56 ~~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~ 89 (359)
+-.++++|.+|||||||+|+|+ ......+....
T Consensus 165 G~i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~ 197 (302)
T 2yv5_A 165 GFICILAGPSGVGKSSILSRLT-GEELRTQEVSE 197 (302)
T ss_dssp TCEEEEECSTTSSHHHHHHHHH-SCCCCCSCC--
T ss_pred CcEEEEECCCCCCHHHHHHHHH-HhhCccccccc
Confidence 4578999999999999999999 66555554443
No 219
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=97.47 E-value=7.1e-05 Score=69.87 Aligned_cols=30 Identities=33% Similarity=0.447 Sum_probs=23.5
Q ss_pred CcEEEEEecCCCChhHHHHHHHhccccccC
Q 018241 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAA 85 (359)
Q Consensus 56 ~~~i~ivG~pn~GKSTL~n~L~~~~~~~~~ 85 (359)
+-.++++|++|||||||+|+|.|......+
T Consensus 169 geiv~l~G~sG~GKSTll~~l~g~~~~~~G 198 (301)
T 1u0l_A 169 GKISTMAGLSGVGKSSLLNAINPGLKLRVS 198 (301)
T ss_dssp SSEEEEECSTTSSHHHHHHHHSTTCCCC--
T ss_pred CCeEEEECCCCCcHHHHHHHhccccccccc
Confidence 347899999999999999999965554433
No 220
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.31 E-value=0.00012 Score=71.72 Aligned_cols=23 Identities=22% Similarity=0.355 Sum_probs=20.7
Q ss_pred CCcEEEEEecCCCChhHHHHHHH
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVV 77 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~ 77 (359)
.+..|+++|.+||||||+++.|.
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA 118 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLA 118 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 35689999999999999999998
No 221
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.31 E-value=0.00011 Score=64.31 Aligned_cols=43 Identities=21% Similarity=0.308 Sum_probs=34.3
Q ss_pred CcEEEEEecCCCChhHHHHHHHhccc-cccCCCCceeccceeEE
Q 018241 56 SLRAGIVGLPNVGKSTLFNAVVENGK-AQAANFPFCTIEPNVGI 98 (359)
Q Consensus 56 ~~~i~ivG~pn~GKSTL~n~L~~~~~-~~~~~~p~tT~~~~~g~ 98 (359)
+..|+|+|++|||||||+++|.+... ......+.||+.|..|.
T Consensus 19 g~~ivl~GPSGaGKsTL~~~L~~~~~~~~~~~vs~TTR~p~~gE 62 (197)
T 3ney_A 19 RKTLVLIGASGVGRSHIKNALLSQNPEKFVYPVPYTTRPPRKSE 62 (197)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCCCTTC
T ss_pred CCEEEEECcCCCCHHHHHHHHHhhCCccEEeeecccccCCcCCe
Confidence 35789999999999999999995543 24566778999888764
No 222
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.18 E-value=0.00025 Score=60.66 Aligned_cols=42 Identities=19% Similarity=0.262 Sum_probs=28.7
Q ss_pred CcEEEEEecCCCChhHHHHHHHhcccc-ccCCCCceeccceeE
Q 018241 56 SLRAGIVGLPNVGKSTLFNAVVENGKA-QAANFPFCTIEPNVG 97 (359)
Q Consensus 56 ~~~i~ivG~pn~GKSTL~n~L~~~~~~-~~~~~p~tT~~~~~g 97 (359)
+-.++|+|++|||||||++.|.+.... .....+.+|+.+..|
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~~~~~~~~~~i~~ttr~~~~g 47 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLITKHPDRFAYPIPHTTRPPKKD 47 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCC---
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCCccEEEeeeccCCCCCcc
Confidence 347999999999999999999964321 223455677766554
No 223
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=97.04 E-value=0.00032 Score=65.41 Aligned_cols=23 Identities=22% Similarity=0.267 Sum_probs=20.6
Q ss_pred CcEEEEEecCCCChhHHHHHHHh
Q 018241 56 SLRAGIVGLPNVGKSTLFNAVVE 78 (359)
Q Consensus 56 ~~~i~ivG~pn~GKSTL~n~L~~ 78 (359)
+..|+++|.+|+||||+++.|.+
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~ 120 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAY 120 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45789999999999999999983
No 224
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=96.93 E-value=0.00026 Score=61.67 Aligned_cols=24 Identities=25% Similarity=0.369 Sum_probs=21.0
Q ss_pred CcEEEEEecCCCChhHHHHHHHhc
Q 018241 56 SLRAGIVGLPNVGKSTLFNAVVEN 79 (359)
Q Consensus 56 ~~~i~ivG~pn~GKSTL~n~L~~~ 79 (359)
+..++|+|++|||||||++.|++.
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~~ 27 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQE 27 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 357999999999999999999964
No 225
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=96.91 E-value=0.00046 Score=67.71 Aligned_cols=23 Identities=22% Similarity=0.209 Sum_probs=20.5
Q ss_pred CCcEEEEEecCCCChhHHHHHHH
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVV 77 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~ 77 (359)
.+..|+++|.+|+||||+...|.
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA 121 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLG 121 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 34689999999999999999998
No 226
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=96.91 E-value=0.0018 Score=61.87 Aligned_cols=104 Identities=13% Similarity=0.167 Sum_probs=62.5
Q ss_pred CceEEEEecCCCcCCCCcCcchhhhHhhHHHhcccceEEeecCC-------------------------------CccEE
Q 018241 120 PASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFE-------------------------------DNDIV 168 (359)
Q Consensus 120 ~~~i~lvDtpG~~~~~~~~~~~~~~~l~~i~~aD~il~Vvd~~~-------------------------------~~~v~ 168 (359)
...+.+|||+|...... .+....+++|++++|+|.++ +.+++
T Consensus 192 ~~~l~iwDt~GQe~~r~-------~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~~~~~pii 264 (353)
T 1cip_A 192 DLHFKMFDVGGQRSERK-------KWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSII 264 (353)
T ss_dssp TEEEEEEEECCSGGGGG-------GGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEE
T ss_pred CeeEEEEeCCCchhhhH-------HHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCccccCCcEE
Confidence 45789999999865444 55666789999999999886 13578
Q ss_pred EeCCcccCCcchHHHHhhhh--------hccHHHHHHHHH----HHh-----hhccccccchhhHHHHHHHHHHHHHHhc
Q 018241 169 HVNGKVDPKSDVDVINLELV--------FSDLDQIEKRME----KLK-----KGKAKDSQSKLKEDAEKAALEKIQQALM 231 (359)
Q Consensus 169 ~v~nk~d~~~~~~~i~~el~--------~~d~~~l~~~~~----~~~-----~~~~~~~~Sa~~~~~~~~ll~~i~~~L~ 231 (359)
.+.||.|...+... ...+. -.+.+...+... .+. .......+||+++.++..+++.+.+.+.
T Consensus 265 Lv~NK~DL~~~ki~-~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~~nV~~vF~~v~~~i~ 343 (353)
T 1cip_A 265 LFLNKKDLFEEKIK-KSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVII 343 (353)
T ss_dssp EEEECHHHHHHHHT-TSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHHHHH
T ss_pred EEEECcCchhhhcc-ccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCchhHHHHHHHHHHHHH
Confidence 89999996422100 00000 011222222111 110 0011135789999999999988877663
No 227
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=96.87 E-value=0.00049 Score=59.13 Aligned_cols=24 Identities=42% Similarity=0.607 Sum_probs=21.5
Q ss_pred cEEEEEecCCCChhHHHHHHHhcc
Q 018241 57 LRAGIVGLPNVGKSTLFNAVVENG 80 (359)
Q Consensus 57 ~~i~ivG~pn~GKSTL~n~L~~~~ 80 (359)
++++|+|.+|+|||||++.|+|.-
T Consensus 1 ~~i~l~G~nGsGKTTLl~~l~g~l 24 (178)
T 1ye8_A 1 MKIIITGEPGVGKTTLVKKIVERL 24 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHh
Confidence 479999999999999999999653
No 228
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=96.76 E-value=0.00071 Score=59.30 Aligned_cols=43 Identities=26% Similarity=0.285 Sum_probs=29.9
Q ss_pred CCcEEEEEecCCCChhHHHHHHHhcccc-ccCCCCceeccceeE
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVVENGKA-QAANFPFCTIEPNVG 97 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~~~~~~-~~~~~p~tT~~~~~g 97 (359)
.+.-|+|+|++|||||||++.|.+.... .....+.+|+.+..+
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~~~~~~~~~~~~~tr~~~~~ 50 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKDPETSFDYSISMTTRLPREG 50 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHSTTCCCEECCCEESSCCCTT
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhCCCcEEEEEecccccCcCc
Confidence 3457999999999999999999954322 333445566555443
No 229
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=96.72 E-value=0.00058 Score=58.65 Aligned_cols=40 Identities=25% Similarity=0.253 Sum_probs=26.7
Q ss_pred EEEEEecCCCChhHHHHHHHhcccc-ccCCCCceeccceeE
Q 018241 58 RAGIVGLPNVGKSTLFNAVVENGKA-QAANFPFCTIEPNVG 97 (359)
Q Consensus 58 ~i~ivG~pn~GKSTL~n~L~~~~~~-~~~~~p~tT~~~~~g 97 (359)
-++|+|++|||||||++.|++.... .......+|+.+..|
T Consensus 3 ii~l~GpsGaGKsTl~~~L~~~~~~~~~~~~~~~tr~~~~g 43 (186)
T 3a00_A 3 PIVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAG 43 (186)
T ss_dssp CEEEESSSSSSHHHHHHHHHHHCGGGEECCCEEECSCCCTT
T ss_pred EEEEECCCCCCHHHHHHHHHhhCCccceEEeeccccCCCCC
Confidence 4899999999999999999964321 112333455444433
No 230
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=96.66 E-value=0.0011 Score=58.92 Aligned_cols=42 Identities=17% Similarity=0.226 Sum_probs=28.5
Q ss_pred ccCCcEEEEEecCCCChhHHHHHHHhcccc--ccCCCCceeccc
Q 018241 53 ISMSLRAGIVGLPNVGKSTLFNAVVENGKA--QAANFPFCTIEP 94 (359)
Q Consensus 53 ~~~~~~i~ivG~pn~GKSTL~n~L~~~~~~--~~~~~p~tT~~~ 94 (359)
+..+--++|+|++|||||||++.|+|.... .......+|+.+
T Consensus 13 ~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~ 56 (219)
T 1s96_A 13 MAQGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQP 56 (219)
T ss_dssp --CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCC
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCC
Confidence 445568999999999999999999965431 223444455443
No 231
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=96.65 E-value=0.00072 Score=58.64 Aligned_cols=41 Identities=27% Similarity=0.272 Sum_probs=31.6
Q ss_pred EEEEecCCCChhHHHHHHHhccc-cccCCCCceeccceeEEE
Q 018241 59 AGIVGLPNVGKSTLFNAVVENGK-AQAANFPFCTIEPNVGIV 99 (359)
Q Consensus 59 i~ivG~pn~GKSTL~n~L~~~~~-~~~~~~p~tT~~~~~g~~ 99 (359)
|.|+|++|||||||+++|..... ...-..+.||+.|..|..
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~~~~~~~~svs~TTR~pR~gE~ 45 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGEV 45 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHCTTTEEECCCEECSCCCTTCC
T ss_pred EEEECCCCCCHHHHHHHHHHhCCCCeEEEEEEeccCCCCCCc
Confidence 78999999999999999984322 223467789998887754
No 232
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=96.57 E-value=0.001 Score=55.91 Aligned_cols=25 Identities=24% Similarity=0.211 Sum_probs=21.7
Q ss_pred cCCcEEEEEecCCCChhHHHHHHHh
Q 018241 54 SMSLRAGIVGLPNVGKSTLFNAVVE 78 (359)
Q Consensus 54 ~~~~~i~ivG~pn~GKSTL~n~L~~ 78 (359)
.++..|+|+|.+|||||||.+.|.+
T Consensus 2 ~~~~~i~l~G~~GsGKSTl~~~La~ 26 (173)
T 1kag_A 2 AEKRNIFLVGPMGAGKSTIGRQLAQ 26 (173)
T ss_dssp -CCCCEEEECCTTSCHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHH
Confidence 3456899999999999999999984
No 233
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=96.56 E-value=0.00084 Score=58.49 Aligned_cols=44 Identities=18% Similarity=0.138 Sum_probs=30.1
Q ss_pred ccCCcEEEEEecCCCChhHHHHHHHhcccc-ccCCCCceecccee
Q 018241 53 ISMSLRAGIVGLPNVGKSTLFNAVVENGKA-QAANFPFCTIEPNV 96 (359)
Q Consensus 53 ~~~~~~i~ivG~pn~GKSTL~n~L~~~~~~-~~~~~p~tT~~~~~ 96 (359)
+..+..|+|+|.||||||||.+.|...-.. .....+.||+.+..
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl~~~L~~~~~~~~~~~~~~ttR~~~~ 53 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTLIKKVLSEFPSRFRFSISCTTRNKRE 53 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHHHHHHHHHCTTTEEECCEEECSCCCT
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHHhCccceeeeeeecCCCCCC
Confidence 345678999999999999999999843211 12233456666654
No 234
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=96.55 E-value=0.004 Score=59.54 Aligned_cols=37 Identities=24% Similarity=0.371 Sum_probs=25.3
Q ss_pred CceEEEEecCCCcCCCCcCcchhhhHhhHHHhcccceEEeecCC
Q 018241 120 PASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFE 163 (359)
Q Consensus 120 ~~~i~lvDtpG~~~~~~~~~~~~~~~l~~i~~aD~il~Vvd~~~ 163 (359)
...+.+|||||...... .+....++++++++|+|+++
T Consensus 200 ~~~l~i~Dt~Gq~~~r~-------~w~~~f~~~~~iIfv~dls~ 236 (362)
T 1zcb_A 200 NVPFKMVDVGGQRSERK-------RWFECFDSVTSILFLVSSSE 236 (362)
T ss_dssp TEEEEEEEECC--------------CTTSCTTCCEEEEEEETTC
T ss_pred CeEEEEEeccchhhhhh-------hHHHHhCCCCEEEEEEECcc
Confidence 45799999999965544 44555678999999999986
No 235
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=96.47 E-value=0.0041 Score=61.04 Aligned_cols=21 Identities=24% Similarity=0.379 Sum_probs=19.0
Q ss_pred cEEEEEecCCCChhHHHHHHH
Q 018241 57 LRAGIVGLPNVGKSTLFNAVV 77 (359)
Q Consensus 57 ~~i~ivG~pn~GKSTL~n~L~ 77 (359)
.-|+|+|.+++|||+|+|.|+
T Consensus 68 ~vvsv~G~~~~gks~l~N~ll 88 (457)
T 4ido_A 68 VAVSVAGAFRKGKSFLMDFML 88 (457)
T ss_dssp EEEEEEEBTTSSHHHHHHHHH
T ss_pred EEEEEECCCCCchhHHHHHHH
Confidence 578899999999999999776
No 236
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=96.40 E-value=0.0019 Score=55.19 Aligned_cols=24 Identities=29% Similarity=0.286 Sum_probs=21.4
Q ss_pred CCcEEEEEecCCCChhHHHHHHHh
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVVE 78 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~~ 78 (359)
.+..|+|+|.||||||||++.|.+
T Consensus 8 ~g~~i~l~G~~GsGKSTl~~~La~ 31 (191)
T 1zp6_A 8 GGNILLLSGHPGSGKSTIAEALAN 31 (191)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHh
Confidence 345799999999999999999994
No 237
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=96.37 E-value=0.0018 Score=56.48 Aligned_cols=26 Identities=31% Similarity=0.374 Sum_probs=23.0
Q ss_pred cCCcEEEEEecCCCChhHHHHHHHhc
Q 018241 54 SMSLRAGIVGLPNVGKSTLFNAVVEN 79 (359)
Q Consensus 54 ~~~~~i~ivG~pn~GKSTL~n~L~~~ 79 (359)
..+..|+|+|.+|||||||++.|.+.
T Consensus 20 ~~g~~v~I~G~sGsGKSTl~~~l~~~ 45 (208)
T 3c8u_A 20 PGRQLVALSGAPGSGKSTLSNPLAAA 45 (208)
T ss_dssp CSCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 45679999999999999999999954
No 238
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=96.37 E-value=0.0019 Score=55.76 Aligned_cols=24 Identities=25% Similarity=0.236 Sum_probs=21.6
Q ss_pred CcEEEEEecCCCChhHHHHHHHhc
Q 018241 56 SLRAGIVGLPNVGKSTLFNAVVEN 79 (359)
Q Consensus 56 ~~~i~ivG~pn~GKSTL~n~L~~~ 79 (359)
+.-++|+|.+|||||||++.|++.
T Consensus 7 g~ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 7 ANLFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CcEEEEECcCCCCHHHHHHHHHhh
Confidence 457999999999999999999954
No 239
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=96.35 E-value=0.0016 Score=56.92 Aligned_cols=27 Identities=26% Similarity=0.270 Sum_probs=22.6
Q ss_pred cCCcEEEEEecCCCChhHHHHHHHhcc
Q 018241 54 SMSLRAGIVGLPNVGKSTLFNAVVENG 80 (359)
Q Consensus 54 ~~~~~i~ivG~pn~GKSTL~n~L~~~~ 80 (359)
..+--++|+|.+|||||||++.|+|..
T Consensus 18 ~~Gei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 18 AVGRVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp -CCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 345579999999999999999999653
No 240
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=96.35 E-value=0.0024 Score=57.28 Aligned_cols=37 Identities=27% Similarity=0.325 Sum_probs=28.0
Q ss_pred CCcEEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCC
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPD 103 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~ 103 (359)
.+-.++|+|++|||||||++.|+|-. .|..|.+.+.+
T Consensus 30 ~Ge~~~iiG~nGsGKSTLl~~l~Gl~------------~p~~G~I~~~g 66 (235)
T 3tif_A 30 EGEFVSIMGPSGSGKSTMLNIIGCLD------------KPTEGEVYIDN 66 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS------------CCSEEEEEETT
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC------------CCCceEEEECC
Confidence 34579999999999999999999432 14567766653
No 241
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=96.28 E-value=0.0029 Score=56.29 Aligned_cols=25 Identities=28% Similarity=0.226 Sum_probs=21.5
Q ss_pred CCcEEEEEecCCCChhHHHHHHHhc
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVVEN 79 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~~~ 79 (359)
.+-.++|+|++|||||||++.|+|-
T Consensus 29 ~Ge~~~iiG~nGsGKSTLl~~l~Gl 53 (224)
T 2pcj_A 29 KGEFVSIIGASGSGKSTLLYILGLL 53 (224)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3447899999999999999999943
No 242
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=96.21 E-value=0.0015 Score=57.90 Aligned_cols=26 Identities=15% Similarity=0.242 Sum_probs=16.9
Q ss_pred CCcEEEEEecCCCChhHHHHHHH-hcc
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVV-ENG 80 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~-~~~ 80 (359)
.+..++|+|.+|||||||++.|. +..
T Consensus 26 ~G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 26 VGVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CCCEEEEECSCC----CHHHHHHC---
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 34579999999999999999999 653
No 243
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=96.20 E-value=0.0034 Score=56.49 Aligned_cols=35 Identities=20% Similarity=0.283 Sum_probs=27.2
Q ss_pred cEEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCC
Q 018241 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPD 103 (359)
Q Consensus 57 ~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~ 103 (359)
-.++|+|.+|||||||++.|+|-. .|..|.+.+.+
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl~------------~p~~G~i~~~g 59 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGIV------------KPDRGEVRLNG 59 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSS------------CCSEEEEEETT
T ss_pred EEEEEECCCCCCHHHHHHHHhCCC------------CCCceEEEECC
Confidence 478999999999999999999432 14567776654
No 244
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=96.19 E-value=0.0026 Score=55.85 Aligned_cols=24 Identities=33% Similarity=0.392 Sum_probs=21.6
Q ss_pred CCcEEEEEecCCCChhHHHHHHHh
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVVE 78 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~~ 78 (359)
+.+.|+|+|.+||||||+.+.|.+
T Consensus 4 ~~~~i~i~G~~GsGKSTl~~~L~~ 27 (227)
T 1cke_A 4 IAPVITIDGPSGAGKGTLCKAMAE 27 (227)
T ss_dssp CSCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999999984
No 245
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=96.13 E-value=0.0036 Score=57.09 Aligned_cols=37 Identities=24% Similarity=0.323 Sum_probs=27.9
Q ss_pred CCcEEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCC
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPD 103 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~ 103 (359)
.+-.++|+|.+|||||||++.|+|-. .|..|.+.+.+
T Consensus 31 ~Ge~~~liG~nGsGKSTLlk~l~Gl~------------~p~~G~i~~~g 67 (262)
T 1b0u_A 31 AGDVISIIGSSGSGKSTFLRCINFLE------------KPSEGAIIVNG 67 (262)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS------------CCSEEEEEETT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC------------CCCCcEEEECC
Confidence 34578999999999999999999432 14567766653
No 246
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=96.12 E-value=0.0024 Score=56.39 Aligned_cols=25 Identities=28% Similarity=0.356 Sum_probs=21.9
Q ss_pred CCcEEEEEecCCCChhHHHHHHHhc
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVVEN 79 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~~~ 79 (359)
.+-.++|+|++|||||||++.|+|.
T Consensus 22 ~G~~~~lvGpsGsGKSTLl~~L~g~ 46 (218)
T 1z6g_A 22 NIYPLVICGPSGVGKGTLIKKLLNE 46 (218)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhh
Confidence 3457999999999999999999964
No 247
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=96.12 E-value=0.004 Score=58.51 Aligned_cols=24 Identities=21% Similarity=0.206 Sum_probs=20.9
Q ss_pred CCcEEEEEecCCCChhHHHHHHHh
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVVE 78 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~~ 78 (359)
.+..|+++|.+|+||||++..|.+
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA~ 127 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMAN 127 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 345799999999999999999984
No 248
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=96.10 E-value=0.0043 Score=55.68 Aligned_cols=36 Identities=28% Similarity=0.374 Sum_probs=27.8
Q ss_pred CCcEEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeC
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVP 102 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~ 102 (359)
.+-.++|+|.+|||||||++.|+|-. .|..|.+.+.
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~------------~p~~G~I~~~ 65 (237)
T 2cbz_A 30 EGALVAVVGQVGCGKSSLLSALLAEM------------DKVEGHVAIK 65 (237)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTCS------------EEEEEEEEEC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC------------CCCCceEEEC
Confidence 34579999999999999999999432 2556777665
No 249
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=96.09 E-value=0.0038 Score=56.68 Aligned_cols=25 Identities=32% Similarity=0.291 Sum_probs=21.6
Q ss_pred CCcEEEEEecCCCChhHHHHHHHhc
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVVEN 79 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~~~ 79 (359)
.+-.++|+|++|||||||++.|+|-
T Consensus 32 ~Ge~~~liG~nGsGKSTLlk~l~Gl 56 (257)
T 1g6h_A 32 KGDVTLIIGPNGSGKSTLINVITGF 56 (257)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3447999999999999999999943
No 250
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=96.09 E-value=0.0032 Score=54.71 Aligned_cols=25 Identities=32% Similarity=0.418 Sum_probs=22.0
Q ss_pred CCcEEEEEecCCCChhHHHHHHHhc
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVVEN 79 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~~~ 79 (359)
.+..|||+|.+|||||||++.|.|.
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~ 29 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALART 29 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHH
Confidence 3468999999999999999999953
No 251
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=96.08 E-value=0.0038 Score=57.37 Aligned_cols=37 Identities=30% Similarity=0.345 Sum_probs=28.1
Q ss_pred CCcEEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCC
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPD 103 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~ 103 (359)
.+-.++|+|++|||||||++.|+|-. .|..|.+.+.+
T Consensus 33 ~Ge~~~iiGpnGsGKSTLl~~l~Gl~------------~p~~G~I~~~G 69 (275)
T 3gfo_A 33 RGEVTAILGGNGVGKSTLFQNFNGIL------------KPSSGRILFDN 69 (275)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHTTSS------------CCSEEEEEETT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcCC------------CCCCeEEEECC
Confidence 34579999999999999999999432 14567776653
No 252
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=96.06 E-value=0.0044 Score=55.95 Aligned_cols=25 Identities=36% Similarity=0.359 Sum_probs=21.7
Q ss_pred CCcEEEEEecCCCChhHHHHHHHhc
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVVEN 79 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~~~ 79 (359)
.+-.++|+|.+|||||||++.|+|-
T Consensus 34 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 58 (247)
T 2ff7_A 34 QGEVIGIVGRSGSGKSTLTKLIQRF 58 (247)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3457999999999999999999943
No 253
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=96.05 E-value=0.0043 Score=54.89 Aligned_cols=24 Identities=21% Similarity=0.329 Sum_probs=21.1
Q ss_pred CcEEEEEecCCCChhHHHHHHHhc
Q 018241 56 SLRAGIVGLPNVGKSTLFNAVVEN 79 (359)
Q Consensus 56 ~~~i~ivG~pn~GKSTL~n~L~~~ 79 (359)
+-.++|+|.+|||||||++.|+|-
T Consensus 35 Ge~~~iiG~NGsGKSTLlk~l~Gl 58 (214)
T 1sgw_A 35 GNVVNFHGPNGIGKTTLLKTISTY 58 (214)
T ss_dssp TCCEEEECCTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 346899999999999999999943
No 254
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=96.04 E-value=0.0042 Score=55.79 Aligned_cols=25 Identities=20% Similarity=0.292 Sum_probs=21.6
Q ss_pred CCcEEEEEecCCCChhHHHHHHHhc
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVVEN 79 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~~~ 79 (359)
.+-.++|+|.+|||||||++.|+|-
T Consensus 31 ~Ge~~~l~G~nGsGKSTLl~~l~Gl 55 (240)
T 1ji0_A 31 RGQIVTLIGANGAGKTTTLSAIAGL 55 (240)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3447999999999999999999943
No 255
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=96.01 E-value=0.0044 Score=56.58 Aligned_cols=36 Identities=17% Similarity=0.195 Sum_probs=27.6
Q ss_pred CCcEEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeC
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVP 102 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~ 102 (359)
.+-.++|+|.+|||||||++.|+|-. .|..|.+.+.
T Consensus 49 ~Gei~~liG~NGsGKSTLlk~l~Gl~------------~p~~G~I~~~ 84 (263)
T 2olj_A 49 EGEVVVVIGPSGSGKSTFLRCLNLLE------------DFDEGEIIID 84 (263)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS------------CCSEEEEEET
T ss_pred CCCEEEEEcCCCCcHHHHHHHHHcCC------------CCCCcEEEEC
Confidence 34579999999999999999999432 1456776665
No 256
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=96.00 E-value=0.0049 Score=54.96 Aligned_cols=25 Identities=16% Similarity=0.311 Sum_probs=21.7
Q ss_pred CCcEEEEEecCCCChhHHHHHHHhc
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVVEN 79 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~~~ 79 (359)
.+-.++|+|+.|||||||++.|+|-
T Consensus 33 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 57 (229)
T 2pze_A 33 RGQLLAVAGSTGAGKTSLLMMIMGE 57 (229)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3457999999999999999999943
No 257
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=95.97 E-value=0.0047 Score=56.13 Aligned_cols=25 Identities=20% Similarity=0.272 Sum_probs=21.6
Q ss_pred CCcEEEEEecCCCChhHHHHHHHhc
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVVEN 79 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~~~ 79 (359)
.+-.++|+|.+|||||||++.|+|-
T Consensus 40 ~Gei~~l~G~NGsGKSTLlk~l~Gl 64 (256)
T 1vpl_A 40 EGEIFGLIGPNGAGKTTTLRIISTL 64 (256)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcC
Confidence 3457999999999999999999943
No 258
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=95.96 E-value=0.004 Score=53.64 Aligned_cols=25 Identities=28% Similarity=0.368 Sum_probs=22.0
Q ss_pred CCcEEEEEecCCCChhHHHHHHHhc
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVVEN 79 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~~~ 79 (359)
.+..|+|+|.+|||||||++.|.+.
T Consensus 5 ~g~~i~l~G~~GsGKSTl~~~L~~~ 29 (207)
T 2j41_A 5 KGLLIVLSGPSGVGKGTVRKRIFED 29 (207)
T ss_dssp CCCEEEEECSTTSCHHHHHHHHHHC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHh
Confidence 3568999999999999999999953
No 259
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=95.96 E-value=0.0033 Score=53.72 Aligned_cols=22 Identities=32% Similarity=0.243 Sum_probs=19.9
Q ss_pred cEEEEEecCCCChhHHHHHHHh
Q 018241 57 LRAGIVGLPNVGKSTLFNAVVE 78 (359)
Q Consensus 57 ~~i~ivG~pn~GKSTL~n~L~~ 78 (359)
..++|+|.+|||||||++.|.+
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 4689999999999999999984
No 260
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=95.94 E-value=0.004 Score=52.27 Aligned_cols=23 Identities=30% Similarity=0.354 Sum_probs=20.7
Q ss_pred CCcEEEEEecCCCChhHHHHHHH
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVV 77 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~ 77 (359)
|+..|.|+|.|||||||+.+.|.
T Consensus 1 M~~~I~i~G~~GsGKST~a~~L~ 23 (181)
T 1ly1_A 1 MKKIILTIGCPGSGKSTWAREFI 23 (181)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHH
T ss_pred CCeEEEEecCCCCCHHHHHHHHH
Confidence 34579999999999999999998
No 261
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=95.91 E-value=0.0039 Score=55.80 Aligned_cols=22 Identities=41% Similarity=0.604 Sum_probs=20.8
Q ss_pred CcEEEEEecCCCChhHHHHHHH
Q 018241 56 SLRAGIVGLPNVGKSTLFNAVV 77 (359)
Q Consensus 56 ~~~i~ivG~pn~GKSTL~n~L~ 77 (359)
+..|+|+|.+|||||||++.|.
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La 48 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIA 48 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 5689999999999999999999
No 262
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=95.90 E-value=0.0038 Score=54.90 Aligned_cols=25 Identities=20% Similarity=0.020 Sum_probs=22.1
Q ss_pred CCcEEEEEecCCCChhHHHHHHHhc
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVVEN 79 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~~~ 79 (359)
.+-.++|+|.+|||||||++.|+|-
T Consensus 21 ~Ge~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 21 TNTIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp HCSEEEEECCTTSSTTHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3457999999999999999999976
No 263
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=95.90 E-value=0.0057 Score=56.33 Aligned_cols=25 Identities=28% Similarity=0.301 Sum_probs=21.6
Q ss_pred CCcEEEEEecCCCChhHHHHHHHhc
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVVEN 79 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~~~ 79 (359)
.+-.++|+|.+|||||||++.|+|-
T Consensus 46 ~Ge~~~liG~NGsGKSTLlk~l~Gl 70 (279)
T 2ihy_A 46 KGDKWILYGLNGAGKTTLLNILNAY 70 (279)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCC
Confidence 3457999999999999999999943
No 264
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=95.89 E-value=0.0053 Score=56.02 Aligned_cols=37 Identities=30% Similarity=0.215 Sum_probs=28.1
Q ss_pred CCcEEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCC
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPD 103 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~ 103 (359)
.+-.++|+|.+|||||||++.|+|-. .|..|.+.+.+
T Consensus 32 ~Ge~~~liG~nGsGKSTLl~~i~Gl~------------~p~~G~I~~~g 68 (266)
T 2yz2_A 32 EGECLLVAGNTGSGKSTLLQIVAGLI------------EPTSGDVLYDG 68 (266)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS------------CCSEEEEEETT
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC------------CCCCcEEEECC
Confidence 34579999999999999999999432 14567776654
No 265
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=95.86 E-value=0.006 Score=55.90 Aligned_cols=25 Identities=24% Similarity=0.198 Sum_probs=21.6
Q ss_pred CCcEEEEEecCCCChhHHHHHHHhc
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVVEN 79 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~~~ 79 (359)
.+-.++|+|.+|||||||++.|+|-
T Consensus 44 ~Ge~~~i~G~nGsGKSTLlk~l~Gl 68 (271)
T 2ixe_A 44 PGKVTALVGPNGSGKSTVAALLQNL 68 (271)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3457999999999999999999943
No 266
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=95.85 E-value=0.0036 Score=52.93 Aligned_cols=23 Identities=22% Similarity=0.166 Sum_probs=19.9
Q ss_pred CCcEEEEEecCCCChhHHHHHHH
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVV 77 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~ 77 (359)
.+--++++|.+|||||||++.+.
T Consensus 8 ~gei~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHS
T ss_pred CCEEEEEECCCCCCHHHHHHHHc
Confidence 34578999999999999999865
No 267
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=95.85 E-value=0.0057 Score=55.36 Aligned_cols=25 Identities=28% Similarity=0.272 Sum_probs=21.5
Q ss_pred CCcEEEEEecCCCChhHHHHHHHhc
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVVEN 79 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~~~ 79 (359)
.+-.++|+|.+|||||||++.|+|-
T Consensus 25 ~Ge~~~liG~NGsGKSTLlk~l~Gl 49 (249)
T 2qi9_C 25 AGEILHLVGPNGAGKSTLLARMAGM 49 (249)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCC
Confidence 3447899999999999999999943
No 268
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=95.83 E-value=0.0046 Score=53.52 Aligned_cols=22 Identities=27% Similarity=0.392 Sum_probs=20.4
Q ss_pred cEEEEEecCCCChhHHHHHHHh
Q 018241 57 LRAGIVGLPNVGKSTLFNAVVE 78 (359)
Q Consensus 57 ~~i~ivG~pn~GKSTL~n~L~~ 78 (359)
+.|+|+|.+||||||+.+.|.+
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999984
No 269
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=95.83 E-value=0.0034 Score=57.40 Aligned_cols=25 Identities=28% Similarity=0.339 Sum_probs=21.7
Q ss_pred CCcEEEEEecCCCChhHHHHHHHhc
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVVEN 79 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~~~ 79 (359)
.+-.++|+|.+|||||||++.|+|-
T Consensus 36 ~Ge~~~liG~nGsGKSTLl~~l~Gl 60 (266)
T 4g1u_C 36 SGEMVAIIGPNGAGKSTLLRLLTGY 60 (266)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcC
Confidence 3457999999999999999999943
No 270
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=95.82 E-value=0.0041 Score=58.13 Aligned_cols=37 Identities=19% Similarity=0.281 Sum_probs=28.6
Q ss_pred CCcEEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCC
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPD 103 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~ 103 (359)
.+-.++|||.+|||||||++.|+|-. +|..|.+.+.+
T Consensus 79 ~Ge~vaivG~sGsGKSTLl~ll~gl~------------~p~~G~I~i~G 115 (306)
T 3nh6_A 79 PGQTLALVGPSGAGKSTILRLLFRFY------------DISSGCIRIDG 115 (306)
T ss_dssp TTCEEEEESSSCHHHHHHHHHHTTSS------------CCSEEEEEETT
T ss_pred CCCEEEEECCCCchHHHHHHHHHcCC------------CCCCcEEEECC
Confidence 44589999999999999999999332 25567776654
No 271
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=95.82 E-value=0.0039 Score=56.08 Aligned_cols=25 Identities=24% Similarity=0.239 Sum_probs=21.8
Q ss_pred CCcEEEEEecCCCChhHHHHHHHhc
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVVEN 79 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~~~ 79 (359)
.+-.++|+|.+|||||||++.|+|-
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (243)
T 1mv5_A 27 PNSIIAFAGPSGGGKSTIFSLLERF 51 (243)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3457999999999999999999944
No 272
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=95.81 E-value=0.0049 Score=53.32 Aligned_cols=23 Identities=22% Similarity=0.462 Sum_probs=21.0
Q ss_pred CcEEEEEecCCCChhHHHHHHHh
Q 018241 56 SLRAGIVGLPNVGKSTLFNAVVE 78 (359)
Q Consensus 56 ~~~i~ivG~pn~GKSTL~n~L~~ 78 (359)
+..|+|+|.+|||||||++.|.+
T Consensus 29 g~~i~l~G~~GsGKSTl~~~L~~ 51 (200)
T 4eun_A 29 TRHVVVMGVSGSGKTTIAHGVAD 51 (200)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999984
No 273
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=95.80 E-value=0.004 Score=56.28 Aligned_cols=39 Identities=18% Similarity=0.187 Sum_probs=28.3
Q ss_pred CCcEEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCC
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPD 103 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~ 103 (359)
.+-.++|+|.+|||||||++.|+|-.. ..|..|.+.+.+
T Consensus 28 ~Ge~~~l~G~nGsGKSTLlk~l~Gl~~----------~~p~~G~I~~~g 66 (250)
T 2d2e_A 28 KGEVHALMGPNGAGKSTLGKILAGDPE----------YTVERGEILLDG 66 (250)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTCTT----------CEEEEEEEEETT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC----------CCCCceEEEECC
Confidence 344799999999999999999994310 125567776653
No 274
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=95.79 E-value=0.0066 Score=50.95 Aligned_cols=26 Identities=19% Similarity=0.203 Sum_probs=22.6
Q ss_pred CCcEEEEEecCCCChhHHHHHHHhcc
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVVENG 80 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~~~~ 80 (359)
.+-.++|+|..|||||||++.|+|.-
T Consensus 32 ~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 32 KAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 44579999999999999999999654
No 275
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=95.79 E-value=0.0052 Score=52.53 Aligned_cols=24 Identities=21% Similarity=0.329 Sum_probs=21.5
Q ss_pred CCcEEEEEecCCCChhHHHHHHHh
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVVE 78 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~~ 78 (359)
+...++|+|++|+|||||+++|.+
T Consensus 5 ~~~~i~i~G~sGsGKTTl~~~l~~ 28 (174)
T 1np6_A 5 MIPLLAFAAWSGTGKTTLLKKLIP 28 (174)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred cceEEEEEeCCCCCHHHHHHHHHH
Confidence 456799999999999999999994
No 276
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=95.77 E-value=0.012 Score=56.16 Aligned_cols=36 Identities=11% Similarity=0.195 Sum_probs=27.9
Q ss_pred CceEEEEecCCCcCCCCcCcchhhhHhhHHHhcccceEEeecC
Q 018241 120 PASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCF 162 (359)
Q Consensus 120 ~~~i~lvDtpG~~~~~~~~~~~~~~~l~~i~~aD~il~Vvd~~ 162 (359)
...+.+|||+|...... .+....+++|++++|+|.+
T Consensus 182 ~v~l~iwDtaGQe~~r~-------~~~~y~~~~~~iI~v~dis 217 (354)
T 2xtz_A 182 GEVYRLFDVGGQRNERR-------KWIHLFEGVTAVIFCAAIS 217 (354)
T ss_dssp --EEEEEEECCSTTGGG-------GTGGGCTTEEEEEEEEEGG
T ss_pred ceeeEEEECCCchhhhH-------HHHHHhCCCCEEEEEEECc
Confidence 35789999999965544 4556678999999999987
No 277
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=95.75 E-value=0.0054 Score=57.24 Aligned_cols=26 Identities=31% Similarity=0.446 Sum_probs=22.7
Q ss_pred cCCcEEEEEecCCCChhHHHHHHHhc
Q 018241 54 SMSLRAGIVGLPNVGKSTLFNAVVEN 79 (359)
Q Consensus 54 ~~~~~i~ivG~pn~GKSTL~n~L~~~ 79 (359)
..+-.++|+|++|+|||||++.|+|-
T Consensus 124 ~~Ge~vaIvGpsGsGKSTLl~lL~gl 149 (305)
T 2v9p_A 124 PKKNCLAFIGPPNTGKSMLCNSLIHF 149 (305)
T ss_dssp TTCSEEEEECSSSSSHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhhh
Confidence 34568999999999999999999953
No 278
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=95.75 E-value=0.0026 Score=54.26 Aligned_cols=22 Identities=36% Similarity=0.554 Sum_probs=20.3
Q ss_pred cEEEEEecCCCChhHHHHHHHh
Q 018241 57 LRAGIVGLPNVGKSTLFNAVVE 78 (359)
Q Consensus 57 ~~i~ivG~pn~GKSTL~n~L~~ 78 (359)
..++|+|.+|+|||||++.|.+
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~ 24 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMP 24 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999994
No 279
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=95.70 E-value=0.0046 Score=56.53 Aligned_cols=24 Identities=29% Similarity=0.257 Sum_probs=21.4
Q ss_pred CCcEEEEEecCCCChhHHHHHHHh
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVVE 78 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~~ 78 (359)
.+-.++|+|.+|||||||++.|+|
T Consensus 45 ~Ge~~~l~G~NGsGKSTLlk~l~G 68 (267)
T 2zu0_C 45 PGEVHAIMGPNGSGKSTLSATLAG 68 (267)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 345799999999999999999994
No 280
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=95.68 E-value=0.0058 Score=52.76 Aligned_cols=22 Identities=36% Similarity=0.430 Sum_probs=20.5
Q ss_pred cEEEEEecCCCChhHHHHHHHh
Q 018241 57 LRAGIVGLPNVGKSTLFNAVVE 78 (359)
Q Consensus 57 ~~i~ivG~pn~GKSTL~n~L~~ 78 (359)
+.|+|+|.+||||||+.+.|.+
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 5799999999999999999994
No 281
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=95.65 E-value=0.0046 Score=53.51 Aligned_cols=23 Identities=35% Similarity=0.431 Sum_probs=20.8
Q ss_pred EEEEEecCCCChhHHHHHHHhcc
Q 018241 58 RAGIVGLPNVGKSTLFNAVVENG 80 (359)
Q Consensus 58 ~i~ivG~pn~GKSTL~n~L~~~~ 80 (359)
.++|+|.+|+|||||++.|+|.-
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhc
Confidence 68999999999999999999643
No 282
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=95.65 E-value=0.005 Score=56.07 Aligned_cols=24 Identities=25% Similarity=0.343 Sum_probs=21.4
Q ss_pred CCcEEEEEecCCCChhHHHHHHHh
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVVE 78 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~~ 78 (359)
.+-.++|+|.+|||||||++.|+|
T Consensus 45 ~Ge~~~i~G~nGsGKSTLl~~l~G 68 (260)
T 2ghi_A 45 SGTTCALVGHTGSGKSTIAKLLYR 68 (260)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 345799999999999999999994
No 283
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=95.65 E-value=0.0051 Score=52.17 Aligned_cols=23 Identities=22% Similarity=0.315 Sum_probs=21.0
Q ss_pred CCcEEEEEecCCCChhHHHHHHH
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVV 77 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~ 77 (359)
.++.|+++|.|||||||+.+.|.
T Consensus 3 ~g~~I~l~G~~GsGKST~~~~La 25 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQASRLA 25 (186)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 35689999999999999999998
No 284
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=95.65 E-value=0.0078 Score=57.56 Aligned_cols=37 Identities=32% Similarity=0.397 Sum_probs=28.3
Q ss_pred CCcEEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCC
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPD 103 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~ 103 (359)
.+-.+||+|++|||||||++.|+|-. .|..|.+.+.+
T Consensus 53 ~Gei~~IiGpnGaGKSTLlr~i~GL~------------~p~~G~I~i~G 89 (366)
T 3tui_C 53 AGQIYGVIGASGAGKSTLIRCVNLLE------------RPTEGSVLVDG 89 (366)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSS------------CCSEEEEEETT
T ss_pred CCCEEEEEcCCCchHHHHHHHHhcCC------------CCCceEEEECC
Confidence 34579999999999999999999432 14567776654
No 285
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=95.64 E-value=0.0064 Score=52.57 Aligned_cols=25 Identities=32% Similarity=0.301 Sum_probs=22.1
Q ss_pred cCCcEEEEEecCCCChhHHHHHHHh
Q 018241 54 SMSLRAGIVGLPNVGKSTLFNAVVE 78 (359)
Q Consensus 54 ~~~~~i~ivG~pn~GKSTL~n~L~~ 78 (359)
..+..|+|+|++|||||||.+.|.+
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~~~La~ 47 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLACALNQ 47 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3457899999999999999999984
No 286
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=95.62 E-value=0.013 Score=55.11 Aligned_cols=36 Identities=22% Similarity=0.321 Sum_probs=28.4
Q ss_pred CceEEEEecCCCcCCCCcCcchhhhHhhHHHhcccceEEeecC
Q 018241 120 PASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCF 162 (359)
Q Consensus 120 ~~~i~lvDtpG~~~~~~~~~~~~~~~l~~i~~aD~il~Vvd~~ 162 (359)
...+.+|||+|...... .+....++++++++|+|.+
T Consensus 166 ~v~l~iwDtgGQe~~R~-------~w~~yf~~~~~iIfV~dls 201 (327)
T 3ohm_A 166 SVIFRMVDVGGQRSERR-------KWIHCFENVTSIMFLVALS 201 (327)
T ss_dssp TEEEEEEEECCSHHHHT-------TGGGGCSSCSEEEEEEEGG
T ss_pred ceeeEEEEcCCchhHHH-------HHHHHhCCCCEEEEEEECc
Confidence 45789999999965443 4566778999999999776
No 287
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=95.61 E-value=0.0049 Score=55.90 Aligned_cols=25 Identities=24% Similarity=0.305 Sum_probs=21.6
Q ss_pred CCcEEEEEecCCCChhHHHHHHHhc
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVVEN 79 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~~~ 79 (359)
.+-.++|+|.+|||||||++.|+|-
T Consensus 30 ~Ge~~~l~G~nGsGKSTLl~~l~Gl 54 (253)
T 2nq2_C 30 KGDILAVLGQNGCGKSTLLDLLLGI 54 (253)
T ss_dssp TTCEEEEECCSSSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3447999999999999999999943
No 288
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=95.61 E-value=0.0072 Score=51.38 Aligned_cols=24 Identities=29% Similarity=0.368 Sum_probs=21.5
Q ss_pred cCCcEEEEEecCCCChhHHHHHHH
Q 018241 54 SMSLRAGIVGLPNVGKSTLFNAVV 77 (359)
Q Consensus 54 ~~~~~i~ivG~pn~GKSTL~n~L~ 77 (359)
.+++.|.|+|.|||||||+.+.|.
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~ 26 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALA 26 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHH
Confidence 345789999999999999999998
No 289
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=95.57 E-value=0.0068 Score=50.93 Aligned_cols=23 Identities=22% Similarity=0.284 Sum_probs=20.7
Q ss_pred CcEEEEEecCCCChhHHHHHHHh
Q 018241 56 SLRAGIVGLPNVGKSTLFNAVVE 78 (359)
Q Consensus 56 ~~~i~ivG~pn~GKSTL~n~L~~ 78 (359)
+..|+|+|.+||||||+.+.|.+
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHH
Confidence 35799999999999999999984
No 290
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=95.54 E-value=0.0063 Score=50.47 Aligned_cols=20 Identities=30% Similarity=0.403 Sum_probs=18.9
Q ss_pred cEEEEEecCCCChhHHHHHH
Q 018241 57 LRAGIVGLPNVGKSTLFNAV 76 (359)
Q Consensus 57 ~~i~ivG~pn~GKSTL~n~L 76 (359)
+.|+|+|.|||||||+.+.|
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 47999999999999999999
No 291
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=95.52 E-value=0.0097 Score=54.26 Aligned_cols=23 Identities=30% Similarity=0.411 Sum_probs=20.9
Q ss_pred CcEEEEEecCCCChhHHHHHHHh
Q 018241 56 SLRAGIVGLPNVGKSTLFNAVVE 78 (359)
Q Consensus 56 ~~~i~ivG~pn~GKSTL~n~L~~ 78 (359)
+-.++|+|.+|+|||||++.|+|
T Consensus 30 Ge~~~i~G~NGsGKSTLlk~l~G 52 (263)
T 2pjz_A 30 GEKVIILGPNGSGKTTLLRAISG 52 (263)
T ss_dssp SSEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEEECCCCCCHHHHHHHHhC
Confidence 45799999999999999999994
No 292
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=95.52 E-value=0.006 Score=55.56 Aligned_cols=26 Identities=19% Similarity=0.170 Sum_probs=22.4
Q ss_pred cCCcEEEEEecCCCChhHHHHHHHhc
Q 018241 54 SMSLRAGIVGLPNVGKSTLFNAVVEN 79 (359)
Q Consensus 54 ~~~~~i~ivG~pn~GKSTL~n~L~~~ 79 (359)
..+-.++|+|.+|||||||+++|.|.
T Consensus 23 ~~g~~v~i~Gp~GsGKSTll~~l~g~ 48 (261)
T 2eyu_A 23 RKMGLILVTGPTGSGKSTTIASMIDY 48 (261)
T ss_dssp CSSEEEEEECSTTCSHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCccHHHHHHHHHHh
Confidence 34558999999999999999999953
No 293
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=95.52 E-value=0.0083 Score=52.00 Aligned_cols=24 Identities=33% Similarity=0.519 Sum_probs=21.7
Q ss_pred CCcEEEEEecCCCChhHHHHHHHh
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVVE 78 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~~ 78 (359)
.+..|+|+|.+|+|||||.+.|.+
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~ 43 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQK 43 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999999994
No 294
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=95.51 E-value=0.0064 Score=52.52 Aligned_cols=24 Identities=25% Similarity=0.368 Sum_probs=21.4
Q ss_pred CCcEEEEEecCCCChhHHHHHHHh
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVVE 78 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~~ 78 (359)
+++.|+|+|.|||||||+.+.|.+
T Consensus 17 ~~~~I~l~G~~GsGKSTla~~L~~ 40 (202)
T 3t61_A 17 FPGSIVVMGVSGSGKSSVGEAIAE 40 (202)
T ss_dssp CSSCEEEECSTTSCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999999983
No 295
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=95.49 E-value=0.0073 Score=56.52 Aligned_cols=27 Identities=26% Similarity=0.286 Sum_probs=23.4
Q ss_pred ccCCcEEEEEecCCCChhHHHHHHHhc
Q 018241 53 ISMSLRAGIVGLPNVGKSTLFNAVVEN 79 (359)
Q Consensus 53 ~~~~~~i~ivG~pn~GKSTL~n~L~~~ 79 (359)
...+..|||+|.+|||||||++.|.|.
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~gl 113 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQAL 113 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHhh
Confidence 345678999999999999999999953
No 296
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=95.48 E-value=0.028 Score=54.38 Aligned_cols=37 Identities=19% Similarity=0.341 Sum_probs=30.0
Q ss_pred CceEEEEecCCCcCCCCcCcchhhhHhhHHHhcccceEEeecCC
Q 018241 120 PASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFE 163 (359)
Q Consensus 120 ~~~i~lvDtpG~~~~~~~~~~~~~~~l~~i~~aD~il~Vvd~~~ 163 (359)
+..+.+|||+|...... .+....++++++++|+|.++
T Consensus 216 ~v~l~iwDtaGQe~~r~-------~w~~yf~~a~~iIfV~dis~ 252 (402)
T 1azs_C 216 KVNFHMFDVGGQRDERR-------KWIQCFNDVTAIIFVVASSS 252 (402)
T ss_dssp TEEEEEEEECCSGGGGG-------GGGGGTTTCCEEEEEEETTG
T ss_pred Cccceecccchhhhhhh-------hhHhhccCCCEEEEEEECcc
Confidence 35789999999965544 55666789999999999886
No 297
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=95.48 E-value=0.01 Score=54.86 Aligned_cols=24 Identities=17% Similarity=0.311 Sum_probs=21.3
Q ss_pred CCcEEEEEecCCCChhHHHHHHHh
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVVE 78 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~~ 78 (359)
.+-.++|+|..|+|||||++.|+|
T Consensus 63 ~Ge~~~i~G~NGsGKSTLlk~l~G 86 (290)
T 2bbs_A 63 RGQLLAVAGSTGAGKTSLLMMIMG 86 (290)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCcHHHHHHHHhc
Confidence 345799999999999999999994
No 298
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=95.42 E-value=0.0072 Score=52.84 Aligned_cols=25 Identities=16% Similarity=0.149 Sum_probs=21.9
Q ss_pred CCcEEEEEecCCCChhHHHHHHHhc
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVVEN 79 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~~~ 79 (359)
.+--++|+|.+|||||||++.|++.
T Consensus 24 ~G~~~~l~G~nGsGKSTll~~l~g~ 48 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQLAHTLAVM 48 (231)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 4457999999999999999999953
No 299
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=95.42 E-value=0.0085 Score=50.34 Aligned_cols=22 Identities=18% Similarity=0.175 Sum_probs=20.4
Q ss_pred CcEEEEEecCCCChhHHHHHHH
Q 018241 56 SLRAGIVGLPNVGKSTLFNAVV 77 (359)
Q Consensus 56 ~~~i~ivG~pn~GKSTL~n~L~ 77 (359)
+..|.|+|.|||||||+.++|.
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La 24 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQ 24 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHH
Confidence 4579999999999999999998
No 300
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=95.42 E-value=0.0089 Score=51.36 Aligned_cols=23 Identities=22% Similarity=0.199 Sum_probs=21.4
Q ss_pred CCcEEEEEecCCCChhHHHHHHH
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVV 77 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~ 77 (359)
.++.|+|.|.+||||||+.+.|.
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~ 25 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIM 25 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHH
Confidence 46789999999999999999998
No 301
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=95.36 E-value=0.0087 Score=53.54 Aligned_cols=24 Identities=29% Similarity=0.441 Sum_probs=21.6
Q ss_pred CCcEEEEEecCCCChhHHHHHHHh
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVVE 78 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~~ 78 (359)
.+..|||+|.+|||||||++.|.+
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~ 47 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIME 47 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 446899999999999999999985
No 302
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=95.33 E-value=0.0087 Score=49.76 Aligned_cols=21 Identities=19% Similarity=-0.058 Sum_probs=19.6
Q ss_pred cEEEEEecCCCChhHHHHHHH
Q 018241 57 LRAGIVGLPNVGKSTLFNAVV 77 (359)
Q Consensus 57 ~~i~ivG~pn~GKSTL~n~L~ 77 (359)
+.|+|+|.|||||||+.+.|.
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~ 22 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLS 22 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 468999999999999999998
No 303
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=95.31 E-value=0.0086 Score=51.28 Aligned_cols=21 Identities=29% Similarity=0.471 Sum_probs=19.7
Q ss_pred cEEEEEecCCCChhHHHHHHH
Q 018241 57 LRAGIVGLPNVGKSTLFNAVV 77 (359)
Q Consensus 57 ~~i~ivG~pn~GKSTL~n~L~ 77 (359)
+.|+|+|.+||||||+.+.|.
T Consensus 1 ~~I~i~G~~GsGKsT~~~~L~ 21 (205)
T 2jaq_A 1 MKIAIFGTVGAGKSTISAEIS 21 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHH
T ss_pred CEEEEECCCccCHHHHHHHHH
Confidence 479999999999999999998
No 304
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=95.30 E-value=0.0076 Score=51.08 Aligned_cols=23 Identities=43% Similarity=0.615 Sum_probs=20.3
Q ss_pred CCcEEEEEecCCCChhHHHHHHH
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVV 77 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~ 77 (359)
|.+.|+|+|.|||||||+.+.|.
T Consensus 1 M~~~I~l~G~~GsGKsT~a~~La 23 (184)
T 2iyv_A 1 MAPKAVLVGLPGSGKSTIGRRLA 23 (184)
T ss_dssp -CCSEEEECSTTSSHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHH
Confidence 34679999999999999999997
No 305
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=95.29 E-value=0.0076 Score=50.74 Aligned_cols=21 Identities=33% Similarity=0.392 Sum_probs=19.7
Q ss_pred cEEEEEecCCCChhHHHHHHH
Q 018241 57 LRAGIVGLPNVGKSTLFNAVV 77 (359)
Q Consensus 57 ~~i~ivG~pn~GKSTL~n~L~ 77 (359)
.+|.|+|.|||||||+.+.|.
T Consensus 5 ~~i~i~G~~GsGKsTla~~La 25 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLARALA 25 (175)
T ss_dssp CCEEEECCTTSCHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHH
Confidence 479999999999999999998
No 306
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=95.29 E-value=0.0087 Score=52.09 Aligned_cols=21 Identities=29% Similarity=0.601 Sum_probs=19.8
Q ss_pred cEEEEEecCCCChhHHHHHHH
Q 018241 57 LRAGIVGLPNVGKSTLFNAVV 77 (359)
Q Consensus 57 ~~i~ivG~pn~GKSTL~n~L~ 77 (359)
|+|+|.|.|||||||+.+.|.
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~ 21 (216)
T 3fb4_A 1 MNIVLMGLPGAGKGTQAEQII 21 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 579999999999999999997
No 307
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=95.29 E-value=0.012 Score=57.46 Aligned_cols=23 Identities=26% Similarity=0.153 Sum_probs=20.5
Q ss_pred CcEEEEEecCCCChhHHHHHHHh
Q 018241 56 SLRAGIVGLPNVGKSTLFNAVVE 78 (359)
Q Consensus 56 ~~~i~ivG~pn~GKSTL~n~L~~ 78 (359)
+-.|+++|.+|+||||++..|.+
T Consensus 98 ~~vi~i~G~~GsGKTT~~~~LA~ 120 (425)
T 2ffh_A 98 RNLWFLVGLQGSGKTTTAAKLAL 120 (425)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45789999999999999999984
No 308
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=95.29 E-value=0.013 Score=55.92 Aligned_cols=36 Identities=22% Similarity=0.377 Sum_probs=28.3
Q ss_pred CcEEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCC
Q 018241 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPD 103 (359)
Q Consensus 56 ~~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~ 103 (359)
+--++|+|++|||||||++.|.|-.. |..|.+.+.+
T Consensus 30 Ge~~~llGpsGsGKSTLLr~iaGl~~------------p~~G~I~i~G 65 (359)
T 3fvq_A 30 GEILFIIGASGCGKTTLLRCLAGFEQ------------PDSGEISLSG 65 (359)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHTSSC------------CSEEEEEETT
T ss_pred CCEEEEECCCCchHHHHHHHHhcCCC------------CCCcEEEECC
Confidence 34789999999999999999994322 5567777764
No 309
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=95.25 E-value=0.01 Score=51.23 Aligned_cols=24 Identities=29% Similarity=0.311 Sum_probs=21.3
Q ss_pred CCcEEEEEecCCCChhHHHHHHHh
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVVE 78 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~~ 78 (359)
.+..|+|+|.|||||||+.++|.+
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHH
Confidence 345899999999999999999983
No 310
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=95.24 E-value=0.011 Score=50.24 Aligned_cols=24 Identities=25% Similarity=0.488 Sum_probs=21.6
Q ss_pred CCcEEEEEecCCCChhHHHHHHHh
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVVE 78 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~~ 78 (359)
.+..|+|+|.|||||||+.+.|.+
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~ 35 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLAD 35 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 457899999999999999999983
No 311
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=95.20 E-value=0.0096 Score=51.87 Aligned_cols=21 Identities=33% Similarity=0.547 Sum_probs=19.8
Q ss_pred cEEEEEecCCCChhHHHHHHH
Q 018241 57 LRAGIVGLPNVGKSTLFNAVV 77 (359)
Q Consensus 57 ~~i~ivG~pn~GKSTL~n~L~ 77 (359)
|+|+|+|.|||||||+.+.|.
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~ 21 (216)
T 3dl0_A 1 MNLVLMGLPGAGKGTQGERIV 21 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 579999999999999999997
No 312
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=95.20 E-value=0.012 Score=50.91 Aligned_cols=23 Identities=30% Similarity=0.187 Sum_probs=21.3
Q ss_pred CCcEEEEEecCCCChhHHHHHHH
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVV 77 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~ 77 (359)
+++.|+|.|.|||||||+.+.|.
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~ 31 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLV 31 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHHHHHH
Confidence 45789999999999999999998
No 313
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=95.18 E-value=0.0088 Score=52.97 Aligned_cols=23 Identities=17% Similarity=0.209 Sum_probs=20.8
Q ss_pred CCcEEEEEecCCCChhHHHHHHH
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVV 77 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~ 77 (359)
.+--++|+|++|||||||++.|+
T Consensus 29 ~G~~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 29 EGTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHH
Confidence 44578999999999999999998
No 314
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=95.14 E-value=0.0078 Score=57.32 Aligned_cols=24 Identities=29% Similarity=0.362 Sum_probs=21.8
Q ss_pred CcEEEEEecCCCChhHHHHHHHhc
Q 018241 56 SLRAGIVGLPNVGKSTLFNAVVEN 79 (359)
Q Consensus 56 ~~~i~ivG~pn~GKSTL~n~L~~~ 79 (359)
.-+++|+|.+|+|||||++.|.|.
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl 193 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAV 193 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHH
T ss_pred hCeEEEECCCCCCHHHHHHHHHHH
Confidence 458999999999999999999954
No 315
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=95.13 E-value=0.015 Score=55.46 Aligned_cols=36 Identities=22% Similarity=0.380 Sum_probs=27.9
Q ss_pred CcEEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCC
Q 018241 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPD 103 (359)
Q Consensus 56 ~~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~ 103 (359)
+-.++|+|++|||||||++.|+|-.. |..|.+.+.+
T Consensus 41 Ge~~~llGpnGsGKSTLLr~iaGl~~------------p~~G~I~i~g 76 (355)
T 1z47_A 41 GEMVGLLGPSGSGKTTILRLIAGLER------------PTKGDVWIGG 76 (355)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTSSC------------CSEEEEEETT
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCC------------CCccEEEECC
Confidence 34789999999999999999994321 5567776654
No 316
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=95.12 E-value=0.011 Score=49.95 Aligned_cols=22 Identities=23% Similarity=0.357 Sum_probs=20.4
Q ss_pred CcEEEEEecCCCChhHHHHHHH
Q 018241 56 SLRAGIVGLPNVGKSTLFNAVV 77 (359)
Q Consensus 56 ~~~i~ivG~pn~GKSTL~n~L~ 77 (359)
++.|+|.|.|||||||+.+.|.
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~ 24 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAM 24 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 4689999999999999999998
No 317
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=95.12 E-value=0.015 Score=55.53 Aligned_cols=36 Identities=19% Similarity=0.252 Sum_probs=28.1
Q ss_pred CcEEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCC
Q 018241 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPD 103 (359)
Q Consensus 56 ~~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~ 103 (359)
+-.++|+|++|||||||++.|+|-. .|..|.+.+.+
T Consensus 29 Ge~~~llGpnGsGKSTLLr~iaGl~------------~p~~G~I~i~g 64 (359)
T 2yyz_A 29 GEFVALLGPSGCGKTTTLLMLAGIY------------KPTSGEIYFDD 64 (359)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTSS------------CCSEEEEEETT
T ss_pred CCEEEEEcCCCchHHHHHHHHHCCC------------CCCccEEEECC
Confidence 4478999999999999999999432 15567776654
No 318
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=95.11 E-value=0.013 Score=50.72 Aligned_cols=23 Identities=26% Similarity=0.225 Sum_probs=21.3
Q ss_pred CCcEEEEEecCCCChhHHHHHHH
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVV 77 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~ 77 (359)
.++.|+|.|.|||||||+.+.|.
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~L~ 30 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSRKLV 30 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHH
Confidence 45789999999999999999998
No 319
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=95.09 E-value=0.013 Score=50.65 Aligned_cols=25 Identities=40% Similarity=0.505 Sum_probs=22.1
Q ss_pred cCCcEEEEEecCCCChhHHHHHHHh
Q 018241 54 SMSLRAGIVGLPNVGKSTLFNAVVE 78 (359)
Q Consensus 54 ~~~~~i~ivG~pn~GKSTL~n~L~~ 78 (359)
..+..|+|+|.+|+|||||++.|.+
T Consensus 20 ~~~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 20 AGRLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp SSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3457899999999999999999984
No 320
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=95.08 E-value=0.012 Score=51.33 Aligned_cols=23 Identities=30% Similarity=0.335 Sum_probs=21.2
Q ss_pred CCcEEEEEecCCCChhHHHHHHH
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVV 77 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~ 77 (359)
.++.|+|.|.+||||||+.+.|.
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~ 25 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFA 25 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHH
Confidence 45789999999999999999998
No 321
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=95.06 E-value=0.013 Score=49.94 Aligned_cols=23 Identities=30% Similarity=0.316 Sum_probs=21.2
Q ss_pred CCcEEEEEecCCCChhHHHHHHH
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVV 77 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~ 77 (359)
.++.|+|+|.|||||||+.+.|.
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La 30 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIV 30 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHH
Confidence 45789999999999999999998
No 322
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=95.05 E-value=0.013 Score=54.56 Aligned_cols=26 Identities=27% Similarity=0.238 Sum_probs=22.7
Q ss_pred cCCcEEEEEecCCCChhHHHHHHHhc
Q 018241 54 SMSLRAGIVGLPNVGKSTLFNAVVEN 79 (359)
Q Consensus 54 ~~~~~i~ivG~pn~GKSTL~n~L~~~ 79 (359)
..+..|||+|.+|||||||++.|.+.
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~ 103 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQAL 103 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 34578999999999999999999953
No 323
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=95.04 E-value=0.016 Score=55.58 Aligned_cols=36 Identities=22% Similarity=0.312 Sum_probs=28.1
Q ss_pred CcEEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCC
Q 018241 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPD 103 (359)
Q Consensus 56 ~~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~ 103 (359)
+-.++|+|++|||||||++.|+|-. .|..|.+.+.+
T Consensus 29 Ge~~~llGpnGsGKSTLLr~iaGl~------------~p~~G~I~i~g 64 (372)
T 1g29_1 29 GEFMILLGPSGCGKTTTLRMIAGLE------------EPSRGQIYIGD 64 (372)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTSS------------CCSEEEEEETT
T ss_pred CCEEEEECCCCcHHHHHHHHHHcCC------------CCCccEEEECC
Confidence 3478999999999999999999432 15567777664
No 324
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=95.03 E-value=0.013 Score=52.85 Aligned_cols=23 Identities=26% Similarity=0.346 Sum_probs=21.1
Q ss_pred CCcEEEEEecCCCChhHHHHHHH
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVV 77 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~ 77 (359)
.+..|+|+|.+||||||+.+.|.
T Consensus 26 ~g~~I~I~G~~GsGKSTl~k~La 48 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLCKALA 48 (252)
T ss_dssp TSCEEEEECCTTSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHH
Confidence 34689999999999999999998
No 325
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=95.01 E-value=0.01 Score=55.92 Aligned_cols=24 Identities=21% Similarity=0.292 Sum_probs=21.3
Q ss_pred CcEEEEEecCCCChhHHHHHHHhc
Q 018241 56 SLRAGIVGLPNVGKSTLFNAVVEN 79 (359)
Q Consensus 56 ~~~i~ivG~pn~GKSTL~n~L~~~ 79 (359)
+-.++|+|.+|+|||||+++|+|.
T Consensus 171 g~~v~i~G~~GsGKTTll~~l~g~ 194 (330)
T 2pt7_A 171 GKNVIVCGGTGSGKTTYIKSIMEF 194 (330)
T ss_dssp TCCEEEEESTTSCHHHHHHHGGGG
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 347999999999999999999943
No 326
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=95.00 E-value=0.017 Score=55.58 Aligned_cols=36 Identities=22% Similarity=0.214 Sum_probs=28.2
Q ss_pred CcEEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCC
Q 018241 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPD 103 (359)
Q Consensus 56 ~~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~ 103 (359)
+-.++|+|.+|||||||++.|+|-.. |..|.+.+.+
T Consensus 29 Ge~~~llGpsGsGKSTLLr~iaGl~~------------p~~G~I~i~G 64 (381)
T 3rlf_A 29 GEFVVFVGPSGCGKSTLLRMIAGLET------------ITSGDLFIGE 64 (381)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTSSC------------CSEEEEEETT
T ss_pred CCEEEEEcCCCchHHHHHHHHHcCCC------------CCCeEEEECC
Confidence 34789999999999999999994322 5567776654
No 327
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=95.00 E-value=0.017 Score=55.21 Aligned_cols=36 Identities=22% Similarity=0.316 Sum_probs=28.0
Q ss_pred CcEEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCC
Q 018241 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPD 103 (359)
Q Consensus 56 ~~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~ 103 (359)
+-.++|+|++|||||||++.|+|-. .|..|.+.+.+
T Consensus 29 Ge~~~llGpnGsGKSTLLr~iaGl~------------~p~~G~I~i~g 64 (362)
T 2it1_A 29 GEFMALLGPSGSGKSTLLYTIAGIY------------KPTSGKIYFDE 64 (362)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTSS------------CCSEEEEEETT
T ss_pred CCEEEEECCCCchHHHHHHHHhcCC------------CCCceEEEECC
Confidence 4478999999999999999999432 15567776654
No 328
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=94.99 E-value=0.015 Score=50.14 Aligned_cols=24 Identities=25% Similarity=0.378 Sum_probs=21.7
Q ss_pred cCCcEEEEEecCCCChhHHHHHHH
Q 018241 54 SMSLRAGIVGLPNVGKSTLFNAVV 77 (359)
Q Consensus 54 ~~~~~i~ivG~pn~GKSTL~n~L~ 77 (359)
..++.|+|+|.|||||||+.+.|.
T Consensus 18 ~~~~~I~l~G~~GsGKST~a~~La 41 (201)
T 2cdn_A 18 GSHMRVLLLGPPGAGKGTQAVKLA 41 (201)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHH
Confidence 355789999999999999999998
No 329
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=94.99 E-value=0.013 Score=49.48 Aligned_cols=21 Identities=38% Similarity=0.551 Sum_probs=19.7
Q ss_pred cEEEEEecCCCChhHHHHHHH
Q 018241 57 LRAGIVGLPNVGKSTLFNAVV 77 (359)
Q Consensus 57 ~~i~ivG~pn~GKSTL~n~L~ 77 (359)
+.|.|.|.|||||||+.+.|.
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~ 22 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVK 22 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 469999999999999999998
No 330
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=94.98 E-value=0.01 Score=50.75 Aligned_cols=23 Identities=30% Similarity=0.299 Sum_probs=21.3
Q ss_pred CCcEEEEEecCCCChhHHHHHHH
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVV 77 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~ 77 (359)
+++.|+|+|.|||||||+.+.|.
T Consensus 11 ~~~~I~l~G~~GsGKsT~a~~L~ 33 (199)
T 2bwj_A 11 KCKIIFIIGGPGSGKGTQCEKLV 33 (199)
T ss_dssp HSCEEEEEECTTSSHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHH
Confidence 45789999999999999999998
No 331
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=94.97 E-value=0.054 Score=51.20 Aligned_cols=36 Identities=17% Similarity=0.297 Sum_probs=29.0
Q ss_pred CceEEEEecCCCcCCCCcCcchhhhHhhHHHhcccceEEeecC
Q 018241 120 PASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCF 162 (359)
Q Consensus 120 ~~~i~lvDtpG~~~~~~~~~~~~~~~l~~i~~aD~il~Vvd~~ 162 (359)
...+.+|||+|...... .+....++++++++|+|.+
T Consensus 160 ~v~l~iwDtaGQe~~R~-------~w~~yy~~a~~iIfV~diS 195 (340)
T 4fid_A 160 DIPFHLIDVGGQRSERK-------XWVSFFSDVDCAIFVTSLA 195 (340)
T ss_dssp SCEEEEEECCSCHHHHH-------HHHTTSCSCSEEEEEEEGG
T ss_pred eeeeccccCCCcccccc-------cHHHHhccCCEEEEEEECC
Confidence 46799999999854333 5666779999999999997
No 332
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=94.97 E-value=0.013 Score=48.76 Aligned_cols=21 Identities=29% Similarity=0.376 Sum_probs=19.8
Q ss_pred cEEEEEecCCCChhHHHHHHH
Q 018241 57 LRAGIVGLPNVGKSTLFNAVV 77 (359)
Q Consensus 57 ~~i~ivG~pn~GKSTL~n~L~ 77 (359)
|+|+|.|.|||||||+.+.|.
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~ 21 (168)
T 2pt5_A 1 MRIYLIGFMCSGKSTVGSLLS 21 (168)
T ss_dssp CEEEEESCTTSCHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHH
Confidence 579999999999999999998
No 333
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=94.95 E-value=0.015 Score=49.51 Aligned_cols=23 Identities=22% Similarity=0.449 Sum_probs=21.0
Q ss_pred CCcEEEEEecCCCChhHHHHHHH
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVV 77 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~ 77 (359)
.++.|+|+|.|||||||+.+.|.
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La 31 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIA 31 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHH
Confidence 34689999999999999999998
No 334
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=94.95 E-value=0.018 Score=55.28 Aligned_cols=37 Identities=22% Similarity=0.249 Sum_probs=28.4
Q ss_pred CCcEEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCC
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPD 103 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~ 103 (359)
.+-.++|+|++|||||||++.|.|-. .|..|.+.+.+
T Consensus 36 ~Ge~~~llGpnGsGKSTLLr~iaGl~------------~p~~G~I~i~g 72 (372)
T 1v43_A 36 DGEFLVLLGPSGCGKTTTLRMIAGLE------------EPTEGRIYFGD 72 (372)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSS------------CCSEEEEEETT
T ss_pred CCCEEEEECCCCChHHHHHHHHHcCC------------CCCceEEEECC
Confidence 34478999999999999999999432 15567776654
No 335
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=94.93 E-value=0.014 Score=49.53 Aligned_cols=22 Identities=32% Similarity=0.431 Sum_probs=20.4
Q ss_pred CcEEEEEecCCCChhHHHHHHH
Q 018241 56 SLRAGIVGLPNVGKSTLFNAVV 77 (359)
Q Consensus 56 ~~~i~ivG~pn~GKSTL~n~L~ 77 (359)
++.|+|+|.|||||||+.+.|.
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~ 24 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIV 24 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHH
Confidence 4689999999999999999997
No 336
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=94.92 E-value=0.016 Score=49.08 Aligned_cols=23 Identities=26% Similarity=0.280 Sum_probs=21.0
Q ss_pred CCcEEEEEecCCCChhHHHHHHH
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVV 77 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~ 77 (359)
|+..|+|+|.|||||||+.+.|.
T Consensus 5 ~~~~I~l~G~~GsGKsT~~~~L~ 27 (194)
T 1qf9_A 5 KPNVVFVLGGPGSGKGTQCANIV 27 (194)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHH
T ss_pred cCcEEEEECCCCCCHHHHHHHHH
Confidence 45689999999999999999997
No 337
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=94.92 E-value=0.014 Score=51.04 Aligned_cols=23 Identities=30% Similarity=0.434 Sum_probs=21.2
Q ss_pred CCcEEEEEecCCCChhHHHHHHH
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVV 77 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~ 77 (359)
.++.|+|+|.|||||||+.+.|.
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La 25 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQ 25 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHH
Confidence 35789999999999999999998
No 338
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=94.91 E-value=0.014 Score=50.18 Aligned_cols=22 Identities=18% Similarity=0.243 Sum_probs=20.6
Q ss_pred CcEEEEEecCCCChhHHHHHHH
Q 018241 56 SLRAGIVGLPNVGKSTLFNAVV 77 (359)
Q Consensus 56 ~~~i~ivG~pn~GKSTL~n~L~ 77 (359)
++.|+|.|.|||||||+.+.|.
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~ 25 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLK 25 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHH
Confidence 4689999999999999999998
No 339
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=94.90 E-value=0.013 Score=48.91 Aligned_cols=22 Identities=18% Similarity=0.163 Sum_probs=20.2
Q ss_pred CcEEEEEecCCCChhHHHHHHH
Q 018241 56 SLRAGIVGLPNVGKSTLFNAVV 77 (359)
Q Consensus 56 ~~~i~ivG~pn~GKSTL~n~L~ 77 (359)
.+.|+|.|.|||||||+.+.|.
T Consensus 2 ~~~I~l~G~~GsGKsT~a~~La 23 (173)
T 1e6c_A 2 TEPIFMVGARGCGMTTVGRELA 23 (173)
T ss_dssp CCCEEEESCTTSSHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHH
Confidence 3579999999999999999998
No 340
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=94.90 E-value=0.015 Score=49.09 Aligned_cols=25 Identities=32% Similarity=0.387 Sum_probs=21.8
Q ss_pred CCcEEEEEecCCCChhHHHHHHHhc
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVVEN 79 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~~~ 79 (359)
.+-.++|+|.||+|||||++++.+.
T Consensus 37 ~g~~~~l~G~~G~GKTtL~~~i~~~ 61 (180)
T 3ec2_A 37 EGKGLTFVGSPGVGKTHLAVATLKA 61 (180)
T ss_dssp GCCEEEECCSSSSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 3567999999999999999999843
No 341
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=94.89 E-value=0.012 Score=48.66 Aligned_cols=25 Identities=28% Similarity=0.216 Sum_probs=21.8
Q ss_pred CCcEEEEEecCCCChhHHHHHHHhc
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVVEN 79 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~~~ 79 (359)
.+-.++|+|.+|+|||||++++.+.
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~ 59 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQ 59 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 3457999999999999999999953
No 342
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=94.89 E-value=0.012 Score=56.14 Aligned_cols=24 Identities=25% Similarity=0.403 Sum_probs=21.6
Q ss_pred CCcEEEEEecCCCChhHHHHHHHh
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVVE 78 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~~ 78 (359)
.+-.++|+|.+|+|||||+|+|++
T Consensus 174 ~G~~i~ivG~sGsGKSTll~~l~~ 197 (361)
T 2gza_A 174 LERVIVVAGETGSGKTTLMKALMQ 197 (361)
T ss_dssp TTCCEEEEESSSSCHHHHHHHHHT
T ss_pred cCCEEEEECCCCCCHHHHHHHHHh
Confidence 445899999999999999999994
No 343
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=94.88 E-value=0.015 Score=51.24 Aligned_cols=23 Identities=39% Similarity=0.538 Sum_probs=20.7
Q ss_pred CCcEEEEEecCCCChhHHHHHHH
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVV 77 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~ 77 (359)
.++.|+|+|.|||||||+.+.|.
T Consensus 6 ~~~~I~l~G~~GsGKsT~a~~La 28 (227)
T 1zd8_A 6 RLLRAVIMGAPGSGKGTVSSRIT 28 (227)
T ss_dssp -CCEEEEEECTTSSHHHHHHHHH
T ss_pred cCcEEEEECCCCCCHHHHHHHHH
Confidence 34789999999999999999998
No 344
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=94.88 E-value=0.015 Score=52.01 Aligned_cols=25 Identities=24% Similarity=0.139 Sum_probs=22.7
Q ss_pred ccCCcEEEEEecCCCChhHHHHHHH
Q 018241 53 ISMSLRAGIVGLPNVGKSTLFNAVV 77 (359)
Q Consensus 53 ~~~~~~i~ivG~pn~GKSTL~n~L~ 77 (359)
+..++.|+|.|.|||||||+.+.|.
T Consensus 26 ~~~~~~I~l~G~~GsGKsT~a~~L~ 50 (243)
T 3tlx_A 26 SKPDGRYIFLGAPGSGKGTQSLNLK 50 (243)
T ss_dssp TSCCEEEEEECCTTSSHHHHHHHHH
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHH
Confidence 4467899999999999999999998
No 345
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=94.87 E-value=0.014 Score=52.76 Aligned_cols=23 Identities=35% Similarity=0.456 Sum_probs=21.0
Q ss_pred CCcEEEEEecCCCChhHHHHHHH
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVV 77 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~ 77 (359)
.++.|.|+|.|||||||+.+.|.
T Consensus 3 ~~~lIvl~G~pGSGKSTla~~La 25 (260)
T 3a4m_A 3 DIMLIILTGLPGVGKSTFSKNLA 25 (260)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHH
Confidence 35689999999999999999998
No 346
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=94.86 E-value=0.016 Score=49.56 Aligned_cols=23 Identities=30% Similarity=0.320 Sum_probs=21.2
Q ss_pred CCcEEEEEecCCCChhHHHHHHH
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVV 77 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~ 77 (359)
.++.|+|+|.+||||||+.+.|.
T Consensus 7 ~~~~I~i~G~~GsGKST~~~~La 29 (203)
T 1uf9_A 7 HPIIIGITGNIGSGKSTVAALLR 29 (203)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHH
Confidence 45789999999999999999998
No 347
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=94.83 E-value=0.015 Score=50.72 Aligned_cols=21 Identities=29% Similarity=0.471 Sum_probs=19.8
Q ss_pred cEEEEEecCCCChhHHHHHHH
Q 018241 57 LRAGIVGLPNVGKSTLFNAVV 77 (359)
Q Consensus 57 ~~i~ivG~pn~GKSTL~n~L~ 77 (359)
|+|+|.|.|||||||+.+.|.
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~ 21 (214)
T 1e4v_A 1 MRIILLGAPVAGKGTQAQFIM 21 (214)
T ss_dssp CEEEEEESTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 579999999999999999998
No 348
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=94.81 E-value=0.016 Score=49.05 Aligned_cols=22 Identities=18% Similarity=0.285 Sum_probs=20.5
Q ss_pred CcEEEEEecCCCChhHHHHHHH
Q 018241 56 SLRAGIVGLPNVGKSTLFNAVV 77 (359)
Q Consensus 56 ~~~i~ivG~pn~GKSTL~n~L~ 77 (359)
...|.++|.|||||||+.+.|.
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La 26 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLA 26 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHH
Confidence 4689999999999999999998
No 349
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=94.78 E-value=0.018 Score=50.14 Aligned_cols=27 Identities=30% Similarity=0.274 Sum_probs=23.2
Q ss_pred ccccCCcEEEEEecCCCChhHHHHHHH
Q 018241 51 SKISMSLRAGIVGLPNVGKSTLFNAVV 77 (359)
Q Consensus 51 ~~~~~~~~i~ivG~pn~GKSTL~n~L~ 77 (359)
.....+..|+|+|.+|+||||+.+.|.
T Consensus 20 ~~~~~~~~i~~~G~~GsGKsT~~~~l~ 46 (211)
T 1m7g_A 20 LRNQRGLTIWLTGLSASGKSTLAVELE 46 (211)
T ss_dssp HHTSSCEEEEEECSTTSSHHHHHHHHH
T ss_pred ccCCCCCEEEEECCCCCCHHHHHHHHH
Confidence 334456789999999999999999998
No 350
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=94.74 E-value=0.014 Score=55.43 Aligned_cols=37 Identities=16% Similarity=0.230 Sum_probs=28.3
Q ss_pred CCcEEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCC
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPD 103 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~ 103 (359)
.+-.++|+|++|||||||++.|+|-. .|..|.+.+.+
T Consensus 25 ~Ge~~~llGpnGsGKSTLLr~iaGl~------------~p~~G~I~~~g 61 (348)
T 3d31_A 25 SGEYFVILGPTGAGKTLFLELIAGFH------------VPDSGRILLDG 61 (348)
T ss_dssp TTCEEEEECCCTHHHHHHHHHHHTSS------------CCSEEEEEETT
T ss_pred CCCEEEEECCCCccHHHHHHHHHcCC------------CCCCcEEEECC
Confidence 33478999999999999999999432 15567776654
No 351
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=94.74 E-value=0.013 Score=55.81 Aligned_cols=23 Identities=26% Similarity=0.263 Sum_probs=20.8
Q ss_pred cEEEEEecCCCChhHHHHHHHhc
Q 018241 57 LRAGIVGLPNVGKSTLFNAVVEN 79 (359)
Q Consensus 57 ~~i~ivG~pn~GKSTL~n~L~~~ 79 (359)
-.|+|+|.+|+|||||+++|+|.
T Consensus 124 g~i~I~GptGSGKTTlL~~l~g~ 146 (356)
T 3jvv_A 124 GLVLVTGPTGSGKSTTLAAMLDY 146 (356)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhc
Confidence 37999999999999999999953
No 352
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=94.67 E-value=0.018 Score=54.16 Aligned_cols=25 Identities=32% Similarity=0.352 Sum_probs=22.1
Q ss_pred cCCcEEEEEecCCCChhHHHHHHHh
Q 018241 54 SMSLRAGIVGLPNVGKSTLFNAVVE 78 (359)
Q Consensus 54 ~~~~~i~ivG~pn~GKSTL~n~L~~ 78 (359)
..++-|||+|.+|||||||++.|.+
T Consensus 90 ~~p~iigI~GpsGSGKSTl~~~L~~ 114 (321)
T 3tqc_A 90 KVPYIIGIAGSVAVGKSTTSRVLKA 114 (321)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3457899999999999999999984
No 353
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=94.65 E-value=0.017 Score=50.65 Aligned_cols=23 Identities=30% Similarity=0.390 Sum_probs=21.0
Q ss_pred CCcEEEEEecCCCChhHHHHHHH
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVV 77 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~ 77 (359)
.++.|.|+|.|||||||+.+.|.
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La 26 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIK 26 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 44689999999999999999998
No 354
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=94.59 E-value=0.018 Score=48.81 Aligned_cols=21 Identities=19% Similarity=0.295 Sum_probs=19.6
Q ss_pred cEEEEEecCCCChhHHHHHHH
Q 018241 57 LRAGIVGLPNVGKSTLFNAVV 77 (359)
Q Consensus 57 ~~i~ivG~pn~GKSTL~n~L~ 77 (359)
+.|+|.|.|||||||+.+.|.
T Consensus 1 ~~I~l~G~~GsGKsT~~~~L~ 21 (195)
T 2pbr_A 1 MLIAFEGIDGSGKTTQAKKLY 21 (195)
T ss_dssp CEEEEECSTTSCHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 468999999999999999998
No 355
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=94.59 E-value=0.02 Score=48.32 Aligned_cols=24 Identities=29% Similarity=0.333 Sum_probs=21.4
Q ss_pred CCcEEEEEecCCCChhHHHHHHHh
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVVE 78 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~~ 78 (359)
.+..|+|+|.+||||||+.+.|.+
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~ 27 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEE 27 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999999983
No 356
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=94.58 E-value=0.013 Score=55.81 Aligned_cols=37 Identities=27% Similarity=0.416 Sum_probs=28.5
Q ss_pred CCcEEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCC
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPD 103 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~ 103 (359)
.+-.++|+|++|||||||++.|+|-. .|..|.+.+.+
T Consensus 30 ~Ge~~~llGpnGsGKSTLLr~iaGl~------------~p~~G~I~i~g 66 (353)
T 1oxx_K 30 NGERFGILGPSGAGKTTFMRIIAGLD------------VPSTGELYFDD 66 (353)
T ss_dssp TTCEEEEECSCHHHHHHHHHHHHTSS------------CCSEEEEEETT
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC------------CCCceEEEECC
Confidence 34478999999999999999999432 15567776664
No 357
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=94.53 E-value=0.02 Score=53.30 Aligned_cols=25 Identities=24% Similarity=0.250 Sum_probs=22.0
Q ss_pred CCcEEEEEecCCCChhHHHHHHHhc
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVVEN 79 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~~~ 79 (359)
.+-.|+|+|.+|||||||++.|.+.
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagl 125 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRY 125 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHH
Confidence 3568999999999999999999953
No 358
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=94.52 E-value=0.02 Score=52.86 Aligned_cols=25 Identities=20% Similarity=0.049 Sum_probs=22.2
Q ss_pred cCCcEEEEEecCCCChhHHHHHHHh
Q 018241 54 SMSLRAGIVGLPNVGKSTLFNAVVE 78 (359)
Q Consensus 54 ~~~~~i~ivG~pn~GKSTL~n~L~~ 78 (359)
..+..|+|+|.+|||||||.+.|.+
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~ 53 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYN 53 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3567899999999999999999983
No 359
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=94.52 E-value=0.028 Score=57.00 Aligned_cols=37 Identities=19% Similarity=0.247 Sum_probs=28.5
Q ss_pred CCcEEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCC
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPD 103 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~ 103 (359)
.+-.++|+|++|+|||||++.|+|-. +|..|.+.+++
T Consensus 368 ~G~~~~ivG~sGsGKSTLl~~l~g~~------------~p~~G~i~~~g 404 (582)
T 3b60_A 368 AGKTVALVGRSGSGKSTIASLITRFY------------DIDEGHILMDG 404 (582)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHTTTT------------CCSEEEEEETT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhhcc------------CCCCCeEEECC
Confidence 34589999999999999999999432 25567776654
No 360
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=94.50 E-value=0.018 Score=55.22 Aligned_cols=24 Identities=21% Similarity=0.206 Sum_probs=21.3
Q ss_pred CCcEEEEEecCCCChhHHHHHHHh
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVVE 78 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~~ 78 (359)
.+-.++|+|.+|+|||||+++|++
T Consensus 135 ~g~~i~ivG~~GsGKTTll~~l~~ 158 (372)
T 2ewv_A 135 KMGLILVTGPTGSGKSTTIASMID 158 (372)
T ss_dssp SSEEEEEECSSSSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHh
Confidence 345799999999999999999995
No 361
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=94.48 E-value=0.027 Score=57.23 Aligned_cols=37 Identities=22% Similarity=0.377 Sum_probs=28.6
Q ss_pred CCcEEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCC
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPD 103 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~ 103 (359)
.+-.++|+|++|+|||||++.|+|-. +|..|.+.+++
T Consensus 369 ~G~~~~ivG~sGsGKSTLl~~l~g~~------------~p~~G~i~~~g 405 (595)
T 2yl4_A 369 SGSVTALVGPSGSGKSTVLSLLLRLY------------DPASGTISLDG 405 (595)
T ss_dssp TTCEEEEECCTTSSSTHHHHHHTTSS------------CCSEEEEEETT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCc------------CCCCcEEEECC
Confidence 34589999999999999999999432 25567776654
No 362
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=94.44 E-value=0.021 Score=48.19 Aligned_cols=22 Identities=32% Similarity=0.388 Sum_probs=20.2
Q ss_pred CcEEEEEecCCCChhHHHHHHH
Q 018241 56 SLRAGIVGLPNVGKSTLFNAVV 77 (359)
Q Consensus 56 ~~~i~ivG~pn~GKSTL~n~L~ 77 (359)
...|.|+|.||+||||+.+.|.
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~ 32 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELA 32 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHH
Confidence 4579999999999999999998
No 363
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=94.44 E-value=0.011 Score=51.17 Aligned_cols=20 Identities=30% Similarity=0.423 Sum_probs=19.0
Q ss_pred EEEEEecCCCChhHHHHHHH
Q 018241 58 RAGIVGLPNVGKSTLFNAVV 77 (359)
Q Consensus 58 ~i~ivG~pn~GKSTL~n~L~ 77 (359)
.|+|+|.+||||||+++.|.
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~ 21 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLS 21 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHH
Confidence 58999999999999999998
No 364
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=94.43 E-value=0.018 Score=48.48 Aligned_cols=22 Identities=27% Similarity=0.120 Sum_probs=16.4
Q ss_pred CcEEEEEecCCCChhHHHHHHH
Q 018241 56 SLRAGIVGLPNVGKSTLFNAVV 77 (359)
Q Consensus 56 ~~~i~ivG~pn~GKSTL~n~L~ 77 (359)
++.|.|.|.|||||||+.+.|.
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La 26 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLH 26 (183)
T ss_dssp CCEEEEECCC----CHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 4689999999999999999997
No 365
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=94.42 E-value=0.022 Score=49.78 Aligned_cols=22 Identities=23% Similarity=0.326 Sum_probs=20.6
Q ss_pred CcEEEEEecCCCChhHHHHHHH
Q 018241 56 SLRAGIVGLPNVGKSTLFNAVV 77 (359)
Q Consensus 56 ~~~i~ivG~pn~GKSTL~n~L~ 77 (359)
++.|.|+|.|||||||+.+.|.
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La 26 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIK 26 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHH
Confidence 4789999999999999999998
No 366
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=94.41 E-value=0.018 Score=55.50 Aligned_cols=24 Identities=38% Similarity=0.589 Sum_probs=21.2
Q ss_pred CCcEEEEEecCCCChhHHHHHHHh
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVVE 78 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~~ 78 (359)
.+-.++|+|++|+|||||++.|+|
T Consensus 46 ~Ge~~~llGpsGsGKSTLLr~iaG 69 (390)
T 3gd7_A 46 PGQRVGLLGRTGSGKSTLLSAFLR 69 (390)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHT
T ss_pred CCCEEEEECCCCChHHHHHHHHhC
Confidence 345799999999999999999994
No 367
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=94.33 E-value=0.024 Score=48.13 Aligned_cols=23 Identities=30% Similarity=0.326 Sum_probs=20.5
Q ss_pred CcEEEEEecCCCChhHHHHHHHh
Q 018241 56 SLRAGIVGLPNVGKSTLFNAVVE 78 (359)
Q Consensus 56 ~~~i~ivG~pn~GKSTL~n~L~~ 78 (359)
...++|+|.+|+|||||+++|..
T Consensus 4 ~~~i~i~G~sGsGKTTl~~~L~~ 26 (169)
T 1xjc_A 4 MNVWQVVGYKHSGKTTLMEKWVA 26 (169)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999983
No 368
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=94.33 E-value=0.019 Score=57.37 Aligned_cols=24 Identities=33% Similarity=0.432 Sum_probs=21.1
Q ss_pred CCcEEEEEecCCCChhHHHHHHHh
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVVE 78 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~~ 78 (359)
.+..++|+|.+|||||||+|+|+|
T Consensus 259 ~g~~i~I~GptGSGKTTlL~aL~~ 282 (511)
T 2oap_1 259 HKFSAIVVGETASGKTTTLNAIMM 282 (511)
T ss_dssp TTCCEEEEESTTSSHHHHHHHHGG
T ss_pred CCCEEEEECCCCCCHHHHHHHHHh
Confidence 344699999999999999999994
No 369
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=94.32 E-value=0.041 Score=50.90 Aligned_cols=87 Identities=18% Similarity=0.101 Sum_probs=53.3
Q ss_pred eEEEEecCCCcCCCCcCcchhhhHhhHHHhcccceEEeecCCC------------------ccEEEeCCcccCCcchHHH
Q 018241 122 SVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFED------------------NDIVHVNGKVDPKSDVDVI 183 (359)
Q Consensus 122 ~i~lvDtpG~~~~~~~~~~~~~~~l~~i~~aD~il~Vvd~~~~------------------~~v~~v~nk~d~~~~~~~i 183 (359)
++.+||| ..+... + ....++++|++++|+|+++. .+++.+.||+|...+...
T Consensus 64 ~~~iwD~--qer~~~----l---~~~~~~~ad~vilV~D~~~~~~s~~~l~~~l~~~~~~~~piilv~NK~DL~~~~~v- 133 (301)
T 1u0l_A 64 SGVIENV--LHRKNL----L---TKPHVANVDQVILVVTVKMPETSTYIIDKFLVLAEKNELETVMVINKMDLYDEDDL- 133 (301)
T ss_dssp SEEEEEE--CCCSCE----E---TTTTEESCCEEEEEECSSTTCCCHHHHHHHHHHHHHTTCEEEEEECCGGGCCHHHH-
T ss_pred eEEEEEE--ccccce----e---eccccccCCEEEEEEeCCCCCCCHHHHHHHHHHHHHCCCCEEEEEeHHHcCCchhH-
Confidence 5899999 322222 2 22457899999999999763 246889999997654321
Q ss_pred HhhhhhccHHHHHHHHHHHhhhccccccchhhHHHHHHHHHHHH
Q 018241 184 NLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQ 227 (359)
Q Consensus 184 ~~el~~~d~~~l~~~~~~~~~~~~~~~~Sa~~~~~~~~ll~~i~ 227 (359)
.| .+.....+........+||+++.++.++++.+.
T Consensus 134 -~~--------~~~~~~~~~~~~~~~~~SAktg~gv~~lf~~l~ 168 (301)
T 1u0l_A 134 -RK--------VRELEEIYSGLYPIVKTSAKTGMGIEELKEYLK 168 (301)
T ss_dssp -HH--------HHHHHHHHTTTSCEEECCTTTCTTHHHHHHHHS
T ss_pred -HH--------HHHHHHHHhhhCcEEEEECCCCcCHHHHHHHhc
Confidence 11 111112222111225689999999888776553
No 370
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=94.32 E-value=0.033 Score=56.73 Aligned_cols=37 Identities=22% Similarity=0.328 Sum_probs=28.8
Q ss_pred CCcEEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCC
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPD 103 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~ 103 (359)
.+-.++|+|++|+|||||++.|+|-. +|..|.+.+++
T Consensus 380 ~G~~~~ivG~sGsGKSTll~~l~g~~------------~p~~G~i~~~g 416 (598)
T 3qf4_B 380 PGQKVALVGPTGSGKTTIVNLLMRFY------------DVDRGQILVDG 416 (598)
T ss_dssp TTCEEEEECCTTSSTTHHHHHHTTSS------------CCSEEEEEETT
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCc------------CCCCeEEEECC
Confidence 34589999999999999999999432 25567776664
No 371
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=94.32 E-value=0.019 Score=52.47 Aligned_cols=22 Identities=32% Similarity=0.457 Sum_probs=20.1
Q ss_pred EEEEEecCCCChhHHHHHHHhc
Q 018241 58 RAGIVGLPNVGKSTLFNAVVEN 79 (359)
Q Consensus 58 ~i~ivG~pn~GKSTL~n~L~~~ 79 (359)
-++|+|+||+|||||+++|.+.
T Consensus 46 GvlL~Gp~GtGKTtLakala~~ 67 (274)
T 2x8a_A 46 GVLLAGPPGCGKTLLAKAVANE 67 (274)
T ss_dssp EEEEESSTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHH
Confidence 3999999999999999999953
No 372
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=94.31 E-value=0.019 Score=50.82 Aligned_cols=25 Identities=24% Similarity=0.218 Sum_probs=22.2
Q ss_pred CCcEEEEEecCCCChhHHHHHHHhc
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVVEN 79 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~~~ 79 (359)
.+.-|+|+|..|||||||++.|.+.
T Consensus 19 ~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 19 QPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHhc
Confidence 4578999999999999999999843
No 373
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=94.30 E-value=0.024 Score=52.69 Aligned_cols=25 Identities=24% Similarity=0.266 Sum_probs=21.9
Q ss_pred CCcEEEEEecCCCChhHHHHHHHhc
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVVEN 79 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~~~ 79 (359)
.+-.++++|.+|||||||++.|+|.
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag~ 123 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAHR 123 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 3457999999999999999999964
No 374
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=94.29 E-value=0.021 Score=53.41 Aligned_cols=23 Identities=22% Similarity=0.416 Sum_probs=20.7
Q ss_pred cEEEEEecCCCChhHHHHHHHhc
Q 018241 57 LRAGIVGLPNVGKSTLFNAVVEN 79 (359)
Q Consensus 57 ~~i~ivG~pn~GKSTL~n~L~~~ 79 (359)
.-++|+|+.|||||||+|.|++.
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHS
T ss_pred cEEEEEecCCCCHHHHHHHHHhh
Confidence 46789999999999999999964
No 375
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=94.25 E-value=0.024 Score=48.24 Aligned_cols=21 Identities=24% Similarity=0.322 Sum_probs=19.5
Q ss_pred cEEEEEecCCCChhHHHHHHH
Q 018241 57 LRAGIVGLPNVGKSTLFNAVV 77 (359)
Q Consensus 57 ~~i~ivG~pn~GKSTL~n~L~ 77 (359)
+-|+|.|.+||||||+.+.|.
T Consensus 1 ~~I~l~G~~GsGKsT~~~~L~ 21 (197)
T 2z0h_A 1 MFITFEGIDGSGKSTQIQLLA 21 (197)
T ss_dssp CEEEEECSTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 368999999999999999998
No 376
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=94.24 E-value=0.026 Score=48.45 Aligned_cols=22 Identities=27% Similarity=0.306 Sum_probs=20.4
Q ss_pred CcEEEEEecCCCChhHHHHHHH
Q 018241 56 SLRAGIVGLPNVGKSTLFNAVV 77 (359)
Q Consensus 56 ~~~i~ivG~pn~GKSTL~n~L~ 77 (359)
++.|+|.|.|||||||+.+.|.
T Consensus 15 ~~~I~l~G~~GsGKsT~~~~L~ 36 (203)
T 1ukz_A 15 VSVIFVLGGPGAGKGTQCEKLV 36 (203)
T ss_dssp CEEEEEECSTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 4689999999999999999998
No 377
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=94.19 E-value=0.026 Score=53.17 Aligned_cols=25 Identities=20% Similarity=0.218 Sum_probs=22.3
Q ss_pred CCcEEEEEecCCCChhHHHHHHHhc
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVVEN 79 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~~~ 79 (359)
.+-.++++|.+||||||+++.|.+.
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag~ 152 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLANW 152 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4568999999999999999999953
No 378
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=94.17 E-value=0.023 Score=55.97 Aligned_cols=26 Identities=27% Similarity=0.313 Sum_probs=23.1
Q ss_pred CCcEEEEEecCCCChhHHHHHHHhcc
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVVENG 80 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~~~~ 80 (359)
.+..++|+|.+|||||||++.|+|-.
T Consensus 137 ~Ge~v~IvGpnGsGKSTLlr~L~Gl~ 162 (460)
T 2npi_A 137 EGPRVVIVGGSQTGKTSLSRTLCSYA 162 (460)
T ss_dssp SCCCEEEEESTTSSHHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCcc
Confidence 56789999999999999999999643
No 379
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=94.16 E-value=0.021 Score=55.61 Aligned_cols=24 Identities=25% Similarity=0.169 Sum_probs=21.1
Q ss_pred CcEEEEEecCCCChhHHHHHHHhc
Q 018241 56 SLRAGIVGLPNVGKSTLFNAVVEN 79 (359)
Q Consensus 56 ~~~i~ivG~pn~GKSTL~n~L~~~ 79 (359)
.-.++|+|.+|+|||||+++|++.
T Consensus 167 ggii~I~GpnGSGKTTlL~allg~ 190 (418)
T 1p9r_A 167 HGIILVTGPTGSGKSTTLYAGLQE 190 (418)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHhh
Confidence 346999999999999999999953
No 380
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=94.15 E-value=0.025 Score=49.80 Aligned_cols=21 Identities=33% Similarity=0.240 Sum_probs=19.7
Q ss_pred cEEEEEecCCCChhHHHHHHH
Q 018241 57 LRAGIVGLPNVGKSTLFNAVV 77 (359)
Q Consensus 57 ~~i~ivG~pn~GKSTL~n~L~ 77 (359)
+.|+|.|.|||||||+.+.|.
T Consensus 1 m~I~l~G~~GsGKsT~a~~La 21 (223)
T 2xb4_A 1 MNILIFGPNGSGKGTQGNLVK 21 (223)
T ss_dssp CEEEEECCTTSCHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 479999999999999999998
No 381
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=94.13 E-value=0.031 Score=56.64 Aligned_cols=24 Identities=29% Similarity=0.365 Sum_probs=21.4
Q ss_pred CCcEEEEEecCCCChhHHHHHHHh
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVVE 78 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~~ 78 (359)
.+-.++|+|++|+|||||++.|+|
T Consensus 368 ~G~~~~ivG~sGsGKSTll~~l~g 391 (582)
T 3b5x_A 368 QGKTVALVGRSGSGKSTIANLFTR 391 (582)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 345899999999999999999994
No 382
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=94.12 E-value=0.023 Score=57.20 Aligned_cols=27 Identities=30% Similarity=0.347 Sum_probs=23.3
Q ss_pred cCCcEEEEEecCCCChhHHHHHHHhcc
Q 018241 54 SMSLRAGIVGLPNVGKSTLFNAVVENG 80 (359)
Q Consensus 54 ~~~~~i~ivG~pn~GKSTL~n~L~~~~ 80 (359)
..+-.++|+|.+|||||||++.|+|..
T Consensus 45 ~~Ge~~~LvG~NGaGKSTLlk~l~Gl~ 71 (538)
T 1yqt_A 45 KEGMVVGIVGPNGTGKSTAVKILAGQL 71 (538)
T ss_dssp CTTSEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 455689999999999999999999743
No 383
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=94.11 E-value=0.03 Score=49.73 Aligned_cols=25 Identities=32% Similarity=0.357 Sum_probs=22.2
Q ss_pred cCCcEEEEEecCCCChhHHHHHHHh
Q 018241 54 SMSLRAGIVGLPNVGKSTLFNAVVE 78 (359)
Q Consensus 54 ~~~~~i~ivG~pn~GKSTL~n~L~~ 78 (359)
.+++-|+|.|.|||||||+.+.|..
T Consensus 24 ~~g~~i~i~G~~GsGKsT~~~~l~~ 48 (229)
T 4eaq_A 24 AMSAFITFEGPEGSGKTTVINEVYH 48 (229)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHH
Confidence 3567899999999999999999983
No 384
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=94.06 E-value=0.026 Score=53.51 Aligned_cols=26 Identities=35% Similarity=0.530 Sum_probs=22.7
Q ss_pred CCcEEEEEecCCCChhHHHHHHHhcc
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVVENG 80 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~~~~ 80 (359)
.+-+++|+|.+|+|||||++.|+|..
T Consensus 70 ~Gq~~gIiG~nGaGKTTLl~~I~g~~ 95 (347)
T 2obl_A 70 IGQRIGIFAGSGVGKSTLLGMICNGA 95 (347)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34589999999999999999999653
No 385
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=94.04 E-value=0.036 Score=56.30 Aligned_cols=37 Identities=30% Similarity=0.376 Sum_probs=28.7
Q ss_pred CCcEEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCC
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPD 103 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~ 103 (359)
.+-.++|+|++|+|||||++.|.|-- +|..|.+.+++
T Consensus 368 ~Ge~~~ivG~sGsGKSTll~~l~g~~------------~~~~G~i~i~g 404 (587)
T 3qf4_A 368 PGSLVAVLGETGSGKSTLMNLIPRLI------------DPERGRVEVDE 404 (587)
T ss_dssp TTCEEEEECSSSSSHHHHHHTTTTSS------------CCSEEEEEESS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCc------------cCCCcEEEECC
Confidence 34589999999999999999999432 25567776654
No 386
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=94.03 E-value=0.025 Score=51.84 Aligned_cols=25 Identities=16% Similarity=0.036 Sum_probs=21.7
Q ss_pred CCcEEEEEecCCCChhHHHHHHHhc
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVVEN 79 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~~~ 79 (359)
.+--++|+|.||+|||||++.|++.
T Consensus 34 ~G~~~~i~G~~G~GKTTl~~~ia~~ 58 (296)
T 1cr0_A 34 GGEVIMVTSGSGMGKSTFVRQQALQ 58 (296)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHH
Confidence 4457899999999999999999944
No 387
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=94.01 E-value=0.029 Score=50.18 Aligned_cols=24 Identities=29% Similarity=0.333 Sum_probs=20.9
Q ss_pred cCCcEEEEEecCCCChhHHHHHHH
Q 018241 54 SMSLRAGIVGLPNVGKSTLFNAVV 77 (359)
Q Consensus 54 ~~~~~i~ivG~pn~GKSTL~n~L~ 77 (359)
.+++.|+|.|+||+||||+.+.|.
T Consensus 7 ~~~~~i~i~G~~GsGKsTla~~la 30 (233)
T 3r20_A 7 SGSLVVAVDGPAGTGKSSVSRGLA 30 (233)
T ss_dssp --CCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHH
Confidence 345789999999999999999998
No 388
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=94.01 E-value=0.023 Score=51.11 Aligned_cols=25 Identities=16% Similarity=0.214 Sum_probs=22.0
Q ss_pred cCCcEEEEEecCCCChhHHHHHHHh
Q 018241 54 SMSLRAGIVGLPNVGKSTLFNAVVE 78 (359)
Q Consensus 54 ~~~~~i~ivG~pn~GKSTL~n~L~~ 78 (359)
.++..|.++|.|||||||+.+.|..
T Consensus 30 ~~~~~i~l~G~~GsGKSTla~~L~~ 54 (253)
T 2p5t_B 30 KQPIAILLGGQSGAGKTTIHRIKQK 54 (253)
T ss_dssp SSCEEEEEESCGGGTTHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3557899999999999999999983
No 389
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=94.00 E-value=0.025 Score=51.08 Aligned_cols=23 Identities=22% Similarity=0.268 Sum_probs=21.1
Q ss_pred CcEEEEEecCCCChhHHHHHHHh
Q 018241 56 SLRAGIVGLPNVGKSTLFNAVVE 78 (359)
Q Consensus 56 ~~~i~ivG~pn~GKSTL~n~L~~ 78 (359)
+..|+|+|.+|+||||+.+.|.+
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 56899999999999999999983
No 390
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=93.99 E-value=0.025 Score=62.92 Aligned_cols=37 Identities=19% Similarity=0.199 Sum_probs=28.3
Q ss_pred CCcEEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCC
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPD 103 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~ 103 (359)
.+-+|||||++|+|||||++.|.+- .+|..|.+.+++
T Consensus 1104 ~Ge~vaIVG~SGsGKSTL~~lL~rl------------~~p~~G~I~iDG 1140 (1321)
T 4f4c_A 1104 PGQTLALVGPSGCGKSTVVALLERF------------YDTLGGEIFIDG 1140 (1321)
T ss_dssp TTCEEEEECSTTSSTTSHHHHHTTS------------SCCSSSEEEETT
T ss_pred CCCEEEEECCCCChHHHHHHHHhcC------------ccCCCCEEEECC
Confidence 4458999999999999999999932 125566666654
No 391
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=93.97 E-value=0.026 Score=50.46 Aligned_cols=22 Identities=41% Similarity=0.540 Sum_probs=20.1
Q ss_pred EEEEEecCCCChhHHHHHHHhc
Q 018241 58 RAGIVGLPNVGKSTLFNAVVEN 79 (359)
Q Consensus 58 ~i~ivG~pn~GKSTL~n~L~~~ 79 (359)
-++|+|.||+|||||++++.+.
T Consensus 51 g~ll~G~~G~GKTtl~~~i~~~ 72 (254)
T 1ixz_A 51 GVLLVGPPGVGKTHLARAVAGE 72 (254)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4999999999999999999954
No 392
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=93.95 E-value=0.026 Score=49.04 Aligned_cols=24 Identities=17% Similarity=0.329 Sum_probs=20.9
Q ss_pred CcEEEEEecCCCChhHHHHHHHhc
Q 018241 56 SLRAGIVGLPNVGKSTLFNAVVEN 79 (359)
Q Consensus 56 ~~~i~ivG~pn~GKSTL~n~L~~~ 79 (359)
+--++|+|.||+|||||++.+++.
T Consensus 23 G~~~~i~G~~GsGKTtl~~~l~~~ 46 (235)
T 2w0m_A 23 GFFIALTGEPGTGKTIFSLHFIAK 46 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHH
Confidence 447899999999999999999843
No 393
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=93.93 E-value=0.029 Score=47.30 Aligned_cols=21 Identities=33% Similarity=0.396 Sum_probs=19.2
Q ss_pred EEEEEecCCCChhHHHHHHHh
Q 018241 58 RAGIVGLPNVGKSTLFNAVVE 78 (359)
Q Consensus 58 ~i~ivG~pn~GKSTL~n~L~~ 78 (359)
-.+|+|.+|+|||||+.+|..
T Consensus 28 ~~~i~G~NGsGKStll~ai~~ 48 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILF 48 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHH
Confidence 678999999999999999973
No 394
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=93.93 E-value=0.028 Score=56.95 Aligned_cols=37 Identities=24% Similarity=0.309 Sum_probs=28.9
Q ss_pred CCcEEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCC
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPD 103 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~ 103 (359)
.+-.++|+|++|+|||||++.|+|-- +|..|.+.+++
T Consensus 366 ~G~~~~ivG~sGsGKSTll~~l~g~~------------~p~~G~i~~~g 402 (578)
T 4a82_A 366 KGETVAFVGMSGGGKSTLINLIPRFY------------DVTSGQILIDG 402 (578)
T ss_dssp TTCEEEEECSTTSSHHHHHTTTTTSS------------CCSEEEEEETT
T ss_pred CCCEEEEECCCCChHHHHHHHHhcCC------------CCCCcEEEECC
Confidence 44589999999999999999999432 25567777664
No 395
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=93.90 E-value=0.023 Score=57.14 Aligned_cols=24 Identities=25% Similarity=0.405 Sum_probs=21.4
Q ss_pred cEEEEEecCCCChhHHHHHHHhcc
Q 018241 57 LRAGIVGLPNVGKSTLFNAVVENG 80 (359)
Q Consensus 57 ~~i~ivG~pn~GKSTL~n~L~~~~ 80 (359)
-.+||+|..|||||||++.|+|.-
T Consensus 26 ei~gLiGpNGaGKSTLlkiL~Gl~ 49 (538)
T 3ozx_A 26 TILGVLGKNGVGKTTVLKILAGEI 49 (538)
T ss_dssp EEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhcCC
Confidence 468999999999999999999743
No 396
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=93.85 E-value=0.035 Score=49.10 Aligned_cols=23 Identities=30% Similarity=0.450 Sum_probs=21.1
Q ss_pred CCcEEEEEecCCCChhHHHHHHH
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVV 77 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~ 77 (359)
.++.|.|+|.|||||||+.+.|.
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La 37 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLA 37 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 44789999999999999999998
No 397
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=93.81 E-value=0.035 Score=47.58 Aligned_cols=22 Identities=27% Similarity=0.197 Sum_probs=20.1
Q ss_pred cEEEEEecCCCChhHHHHHHHh
Q 018241 57 LRAGIVGLPNVGKSTLFNAVVE 78 (359)
Q Consensus 57 ~~i~ivG~pn~GKSTL~n~L~~ 78 (359)
+.|+|.|.+||||||+.+.|.+
T Consensus 3 ~~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 3 GIVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp SEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999983
No 398
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=93.76 E-value=0.033 Score=48.75 Aligned_cols=21 Identities=24% Similarity=0.351 Sum_probs=19.9
Q ss_pred cEEEEEecCCCChhHHHHHHH
Q 018241 57 LRAGIVGLPNVGKSTLFNAVV 77 (359)
Q Consensus 57 ~~i~ivG~pn~GKSTL~n~L~ 77 (359)
|.|.|+|.|||||+|....|.
T Consensus 1 M~Iil~GpPGsGKgTqa~~La 21 (206)
T 3sr0_A 1 MILVFLGPPGAGKGTQAKRLA 21 (206)
T ss_dssp CEEEEECSTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 579999999999999999998
No 399
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=93.76 E-value=0.035 Score=56.67 Aligned_cols=27 Identities=30% Similarity=0.412 Sum_probs=23.0
Q ss_pred CCcEEEEEecCCCChhHHHHHHHhccc
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVVENGK 81 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~~~~~ 81 (359)
.+-.+||+|.+|+|||||++.|+|...
T Consensus 102 ~Gei~~LvGpNGaGKSTLLkiL~Gll~ 128 (608)
T 3j16_B 102 PGQVLGLVGTNGIGKSTALKILAGKQK 128 (608)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred CCCEEEEECCCCChHHHHHHHHhcCCC
Confidence 345799999999999999999997543
No 400
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=93.75 E-value=0.028 Score=55.70 Aligned_cols=24 Identities=29% Similarity=0.263 Sum_probs=21.3
Q ss_pred cEEEEEecCCCChhHHHHHHHhcc
Q 018241 57 LRAGIVGLPNVGKSTLFNAVVENG 80 (359)
Q Consensus 57 ~~i~ivG~pn~GKSTL~n~L~~~~ 80 (359)
-.++|+|++|||||||+++|+|-.
T Consensus 30 e~~~liG~nGsGKSTLl~~l~Gl~ 53 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMAGFVTAL 53 (483)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHhcCC
Confidence 478999999999999999999643
No 401
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=93.74 E-value=0.035 Score=49.75 Aligned_cols=23 Identities=26% Similarity=0.398 Sum_probs=21.1
Q ss_pred CCcEEEEEecCCCChhHHHHHHH
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVV 77 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~ 77 (359)
.++.|+|.|.+||||||+.+.|.
T Consensus 21 ~~~iI~I~G~~GSGKST~a~~L~ 43 (252)
T 1uj2_A 21 EPFLIGVSGGTASGKSSVCAKIV 43 (252)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHH
Confidence 45789999999999999999997
No 402
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=93.73 E-value=0.036 Score=51.00 Aligned_cols=23 Identities=26% Similarity=0.320 Sum_probs=20.9
Q ss_pred CCcEEEEEecCCCChhHHHHHHH
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVV 77 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~ 77 (359)
++.-|.|+|.|||||||+.++|.
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~ 54 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIF 54 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 45679999999999999999998
No 403
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=93.69 E-value=0.035 Score=50.83 Aligned_cols=23 Identities=26% Similarity=0.291 Sum_probs=20.6
Q ss_pred CcEEEEEecCCCChhHHHHHHHh
Q 018241 56 SLRAGIVGLPNVGKSTLFNAVVE 78 (359)
Q Consensus 56 ~~~i~ivG~pn~GKSTL~n~L~~ 78 (359)
+..|.|+|.|||||||+.+.|..
T Consensus 2 ~~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 2 KKIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999983
No 404
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=93.51 E-value=0.032 Score=56.97 Aligned_cols=27 Identities=26% Similarity=0.326 Sum_probs=23.2
Q ss_pred cCCcEEEEEecCCCChhHHHHHHHhcc
Q 018241 54 SMSLRAGIVGLPNVGKSTLFNAVVENG 80 (359)
Q Consensus 54 ~~~~~i~ivG~pn~GKSTL~n~L~~~~ 80 (359)
..+-.+||+|.+|+|||||++.|+|..
T Consensus 115 ~~Ge~~~LiG~NGsGKSTLlkiL~Gll 141 (607)
T 3bk7_A 115 KDGMVVGIVGPNGTGKTTAVKILAGQL 141 (607)
T ss_dssp CTTSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCCEEEEECCCCChHHHHHHHHhCCC
Confidence 345689999999999999999999743
No 405
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=93.49 E-value=0.04 Score=52.48 Aligned_cols=25 Identities=24% Similarity=0.266 Sum_probs=21.8
Q ss_pred CCcEEEEEecCCCChhHHHHHHHhc
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVVEN 79 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~~~ 79 (359)
.+-.|+++|.+|||||||++.|+|.
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag~ 180 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAHR 180 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHhh
Confidence 3457999999999999999999964
No 406
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=93.46 E-value=0.035 Score=50.41 Aligned_cols=22 Identities=41% Similarity=0.540 Sum_probs=20.1
Q ss_pred EEEEEecCCCChhHHHHHHHhc
Q 018241 58 RAGIVGLPNVGKSTLFNAVVEN 79 (359)
Q Consensus 58 ~i~ivG~pn~GKSTL~n~L~~~ 79 (359)
-++|+|.||+|||||+++|.+.
T Consensus 75 gvll~Gp~GtGKTtl~~~i~~~ 96 (278)
T 1iy2_A 75 GVLLVGPPGVGKTHLARAVAGE 96 (278)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCcChHHHHHHHHHHH
Confidence 4999999999999999999954
No 407
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=93.39 E-value=0.035 Score=52.04 Aligned_cols=23 Identities=26% Similarity=0.429 Sum_probs=20.8
Q ss_pred cEEEEEecCCCChhHHHHHHHhc
Q 018241 57 LRAGIVGLPNVGKSTLFNAVVEN 79 (359)
Q Consensus 57 ~~i~ivG~pn~GKSTL~n~L~~~ 79 (359)
-.++|+|+||+|||||++++.+.
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~~ 74 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIASE 74 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHH
Confidence 46899999999999999999954
No 408
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=93.39 E-value=0.043 Score=54.47 Aligned_cols=24 Identities=25% Similarity=0.403 Sum_probs=21.4
Q ss_pred CcEEEEEecCCCChhHHHHHHHhc
Q 018241 56 SLRAGIVGLPNVGKSTLFNAVVEN 79 (359)
Q Consensus 56 ~~~i~ivG~pn~GKSTL~n~L~~~ 79 (359)
+-.|+|+|.+|||||||++.|.|.
T Consensus 293 GeVI~LVGpNGSGKTTLl~~LAgl 316 (503)
T 2yhs_A 293 PFVILMVGVNGVGKTTTIGKLARQ 316 (503)
T ss_dssp TEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCcccHHHHHHHHHHH
Confidence 457999999999999999999953
No 409
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=93.37 E-value=0.035 Score=52.90 Aligned_cols=20 Identities=35% Similarity=0.499 Sum_probs=18.3
Q ss_pred EEEEEecCCCChhHHHHHHH
Q 018241 58 RAGIVGLPNVGKSTLFNAVV 77 (359)
Q Consensus 58 ~i~ivG~pn~GKSTL~n~L~ 77 (359)
-.+|+|.+||||||||++++
T Consensus 25 ~~~i~G~NGaGKTTll~ai~ 44 (365)
T 3qf7_A 25 ITVVEGPNGAGKSSLFEAIS 44 (365)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 46699999999999999998
No 410
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=93.28 E-value=0.041 Score=53.85 Aligned_cols=25 Identities=28% Similarity=0.392 Sum_probs=22.2
Q ss_pred CCcEEEEEecCCCChhHHHHHHHhc
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVVEN 79 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~~~ 79 (359)
.+-+++|+|.+|+|||||++.|+|.
T Consensus 156 ~Gq~~~IvG~sGsGKSTLl~~Iag~ 180 (438)
T 2dpy_A 156 RGQRMGLFAGSGVGKSVLLGMMARY 180 (438)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcc
Confidence 3458999999999999999999965
No 411
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=93.26 E-value=0.049 Score=49.85 Aligned_cols=23 Identities=22% Similarity=0.335 Sum_probs=20.9
Q ss_pred CCcEEEEEecCCCChhHHHHHHH
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVV 77 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~ 77 (359)
.++.|+|.|.+||||||+.+.|.
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHH
Confidence 34689999999999999999997
No 412
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=93.26 E-value=0.1 Score=47.81 Aligned_cols=77 Identities=10% Similarity=0.122 Sum_probs=50.2
Q ss_pred hhhHhhHHHhcccceEEeecCCC--------------ccEEEeCCcccCCcchHHHHhhhhhccHHHHHHHHHHHhhh-c
Q 018241 142 GNKFLSHIREVDSILQVVRCFED--------------NDIVHVNGKVDPKSDVDVINLELVFSDLDQIEKRMEKLKKG-K 206 (359)
Q Consensus 142 ~~~~l~~i~~aD~il~Vvd~~~~--------------~~v~~v~nk~d~~~~~~~i~~el~~~d~~~l~~~~~~~~~~-~ 206 (359)
.++++..+..+|++++|+|+.++ .+.+.+.||+|.+.. ..+ +.....+... .
T Consensus 14 ~~~~~~~l~~aDvVl~VvDAr~p~~~~~~~l~~~l~~kp~ilVlNK~DL~~~-~~~------------~~~~~~~~~~g~ 80 (282)
T 1puj_A 14 RREVTEKLKLIDIVYELVDARIPMSSRNPMIEDILKNKPRIMLLNKADKADA-AVT------------QQWKEHFENQGI 80 (282)
T ss_dssp HHHHHHHGGGCSEEEEEEETTSTTTTSCHHHHHHCSSSCEEEEEECGGGSCH-HHH------------HHHHHHHHTTTC
T ss_pred HHHHHHHHhhCCEEEEEEeCCCCCccCCHHHHHHHCCCCEEEEEECcccCCH-HHH------------HHHHHHHHhcCC
Confidence 45788999999999999999763 357889999997742 111 1111112111 1
Q ss_pred cccccchhhHHHHHHHHHHHHHHhc
Q 018241 207 AKDSQSKLKEDAEKAALEKIQQALM 231 (359)
Q Consensus 207 ~~~~~Sa~~~~~~~~ll~~i~~~L~ 231 (359)
....+||+.+.++.++++.+.+.++
T Consensus 81 ~~i~iSA~~~~gi~~L~~~i~~~l~ 105 (282)
T 1puj_A 81 RSLSINSVNGQGLNQIVPASKEILQ 105 (282)
T ss_dssp CEEECCTTTCTTGGGHHHHHHHHHH
T ss_pred cEEEEECCCcccHHHHHHHHHHHHH
Confidence 1135678888887787777776664
No 413
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=93.19 E-value=0.053 Score=48.01 Aligned_cols=24 Identities=25% Similarity=0.391 Sum_probs=21.5
Q ss_pred CCcEEEEEecCCCChhHHHHHHHh
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVVE 78 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~~ 78 (359)
.+..|+|+|.+|+||||+.+.|.+
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999999983
No 414
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=93.19 E-value=0.043 Score=47.42 Aligned_cols=24 Identities=21% Similarity=0.076 Sum_probs=21.2
Q ss_pred CCcEEEEEecCCCChhHHHHHHHh
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVVE 78 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~~ 78 (359)
.+--++|+|.||+|||||+..+++
T Consensus 19 ~G~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 19 PGVLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 445789999999999999999994
No 415
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=93.13 E-value=0.056 Score=54.29 Aligned_cols=26 Identities=27% Similarity=0.365 Sum_probs=22.5
Q ss_pred CCcEEEEEecCCCChhHHHHHHHhcc
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVVENG 80 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~~~~ 80 (359)
.+-.+||+|..|+|||||++.|+|..
T Consensus 311 ~Ge~~~i~G~NGsGKSTLlk~l~Gl~ 336 (538)
T 1yqt_A 311 KGEVIGIVGPNGIGKTTFVKMLAGVE 336 (538)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34579999999999999999999643
No 416
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=93.12 E-value=0.052 Score=52.04 Aligned_cols=26 Identities=31% Similarity=0.234 Sum_probs=22.5
Q ss_pred ccCCcEEEEEecCCCChhHHHHHHHh
Q 018241 53 ISMSLRAGIVGLPNVGKSTLFNAVVE 78 (359)
Q Consensus 53 ~~~~~~i~ivG~pn~GKSTL~n~L~~ 78 (359)
...+..++|+|.||+|||||+++|.+
T Consensus 166 i~~~~~i~l~G~~GsGKSTl~~~l~~ 191 (377)
T 1svm_A 166 IPKKRYWLFKGPIDSGKTTLAAALLE 191 (377)
T ss_dssp CTTCCEEEEECSTTSSHHHHHHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHh
Confidence 33456899999999999999999995
No 417
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=93.11 E-value=0.049 Score=45.24 Aligned_cols=21 Identities=24% Similarity=0.325 Sum_probs=19.7
Q ss_pred cEEEEEecCCCChhHHHHHHH
Q 018241 57 LRAGIVGLPNVGKSTLFNAVV 77 (359)
Q Consensus 57 ~~i~ivG~pn~GKSTL~n~L~ 77 (359)
-.|+|.|.|||||||+.+.|.
T Consensus 8 ~~i~l~G~~GsGKSTva~~La 28 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELG 28 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHH
Confidence 479999999999999999997
No 418
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=93.07 E-value=0.045 Score=48.06 Aligned_cols=25 Identities=12% Similarity=0.183 Sum_probs=21.8
Q ss_pred CCcEEEEEecCCCChhHHHHHHHhc
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVVEN 79 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~~~ 79 (359)
.+--++|+|.||+|||||+..|++.
T Consensus 23 ~G~~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHH
Confidence 4457899999999999999999943
No 419
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=93.01 E-value=0.04 Score=55.44 Aligned_cols=25 Identities=28% Similarity=0.401 Sum_probs=21.8
Q ss_pred CCcEEEEEecCCCChhHHHHHHHhc
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVVEN 79 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~~~ 79 (359)
.+-.+||+|.+|+|||||++.|+|-
T Consensus 293 ~Gei~~i~G~nGsGKSTLl~~l~Gl 317 (538)
T 3ozx_A 293 EGEIIGILGPNGIGKTTFARILVGE 317 (538)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3457999999999999999999954
No 420
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=92.96 E-value=0.047 Score=49.17 Aligned_cols=21 Identities=19% Similarity=0.173 Sum_probs=19.3
Q ss_pred EEEEEecCCCChhHHHHHHHh
Q 018241 58 RAGIVGLPNVGKSTLFNAVVE 78 (359)
Q Consensus 58 ~i~ivG~pn~GKSTL~n~L~~ 78 (359)
.|+|+|.||||||||.++|.+
T Consensus 3 li~I~G~~GSGKSTla~~La~ 23 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQ 23 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 589999999999999999983
No 421
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=92.89 E-value=0.048 Score=44.99 Aligned_cols=20 Identities=35% Similarity=0.542 Sum_probs=18.3
Q ss_pred EEEEEecCCCChhHHHHHHH
Q 018241 58 RAGIVGLPNVGKSTLFNAVV 77 (359)
Q Consensus 58 ~i~ivG~pn~GKSTL~n~L~ 77 (359)
-.+|+|..|+|||||+.+|.
T Consensus 25 ~~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 25 INLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 46899999999999999987
No 422
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=92.83 E-value=0.056 Score=48.21 Aligned_cols=22 Identities=32% Similarity=0.477 Sum_probs=20.3
Q ss_pred CcEEEEEecCCCChhHHHHHHH
Q 018241 56 SLRAGIVGLPNVGKSTLFNAVV 77 (359)
Q Consensus 56 ~~~i~ivG~pn~GKSTL~n~L~ 77 (359)
.|++||+|.|||||||+...|.
T Consensus 8 ~~~~~~~G~pGsGKsT~a~~L~ 29 (230)
T 3gmt_A 8 HMRLILLGAPGAGKGTQANFIK 29 (230)
T ss_dssp -CEEEEECCTTSCHHHHHHHHH
T ss_pred ccceeeECCCCCCHHHHHHHHH
Confidence 4799999999999999999998
No 423
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=92.79 E-value=0.058 Score=46.61 Aligned_cols=22 Identities=27% Similarity=0.418 Sum_probs=20.5
Q ss_pred CcEEEEEecCCCChhHHHHHHH
Q 018241 56 SLRAGIVGLPNVGKSTLFNAVV 77 (359)
Q Consensus 56 ~~~i~ivG~pn~GKSTL~n~L~ 77 (359)
.+.|+|+|.++|||||+.+.|.
T Consensus 12 ~~iIgltG~~GSGKSTva~~L~ 33 (192)
T 2grj_A 12 HMVIGVTGKIGTGKSTVCEILK 33 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHH
Confidence 3689999999999999999998
No 424
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=92.68 E-value=0.071 Score=54.39 Aligned_cols=25 Identities=28% Similarity=0.391 Sum_probs=21.9
Q ss_pred CCcEEEEEecCCCChhHHHHHHHhc
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVVEN 79 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~~~ 79 (359)
.+-.+||+|..|+|||||++.|+|.
T Consensus 381 ~Gei~~i~G~NGsGKSTLlk~l~Gl 405 (607)
T 3bk7_A 381 KGEVIGIVGPNGIGKTTFVKMLAGV 405 (607)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3457999999999999999999954
No 425
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=92.63 E-value=0.046 Score=55.10 Aligned_cols=27 Identities=30% Similarity=0.332 Sum_probs=23.5
Q ss_pred ccCCcEEEEEecCCCChhHHHHHHHhc
Q 018241 53 ISMSLRAGIVGLPNVGKSTLFNAVVEN 79 (359)
Q Consensus 53 ~~~~~~i~ivG~pn~GKSTL~n~L~~~ 79 (359)
...+..|+|+|.+|||||||.++|.+.
T Consensus 366 ~~~G~iI~LiG~sGSGKSTLar~La~~ 392 (552)
T 3cr8_A 366 ERQGFTVFFTGLSGAGKSTLARALAAR 392 (552)
T ss_dssp GGSCEEEEEEESSCHHHHHHHHHHHHH
T ss_pred cccceEEEEECCCCChHHHHHHHHHHh
Confidence 446678999999999999999999943
No 426
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=92.56 E-value=0.062 Score=52.90 Aligned_cols=24 Identities=25% Similarity=0.365 Sum_probs=21.4
Q ss_pred cCCcEEEEEecCCCChhHHHHHHH
Q 018241 54 SMSLRAGIVGLPNVGKSTLFNAVV 77 (359)
Q Consensus 54 ~~~~~i~ivG~pn~GKSTL~n~L~ 77 (359)
.+...|.++|.||+||||+.++|.
T Consensus 37 ~~~~~IvlvGlpGsGKSTia~~La 60 (469)
T 1bif_A 37 NCPTLIVMVGLPARGKTYISKKLT 60 (469)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHH
Confidence 355789999999999999999998
No 427
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=92.47 E-value=0.054 Score=55.24 Aligned_cols=23 Identities=22% Similarity=0.224 Sum_probs=20.6
Q ss_pred EEEEEecCCCChhHHHHHHHhcc
Q 018241 58 RAGIVGLPNVGKSTLFNAVVENG 80 (359)
Q Consensus 58 ~i~ivG~pn~GKSTL~n~L~~~~ 80 (359)
.+||+|..|+|||||++.|+|-.
T Consensus 380 iv~iiG~NGsGKSTLlk~l~Gl~ 402 (608)
T 3j16_B 380 ILVMMGENGTGKTTLIKLLAGAL 402 (608)
T ss_dssp EEEEESCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 48999999999999999999643
No 428
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=92.45 E-value=0.18 Score=47.99 Aligned_cols=84 Identities=19% Similarity=0.126 Sum_probs=50.1
Q ss_pred hHhhHH-HhcccceEEeecCCC--------------ccEEEeCCcccCCcchHHHHhhhhhccHHHHHHHHHHHhhh-cc
Q 018241 144 KFLSHI-REVDSILQVVRCFED--------------NDIVHVNGKVDPKSDVDVINLELVFSDLDQIEKRMEKLKKG-KA 207 (359)
Q Consensus 144 ~~l~~i-~~aD~il~Vvd~~~~--------------~~v~~v~nk~d~~~~~~~i~~el~~~d~~~l~~~~~~~~~~-~~ 207 (359)
+++.++ +.+|++++|+|+++. .+++.+.||+|.+.+... ..++. +.+.......... ..
T Consensus 63 ~~L~~~~~~~~lil~VvD~~d~~~s~~~~l~~~l~~~piilV~NK~DLl~~~~~-~~~~~----~~l~~~~~~~g~~~~~ 137 (369)
T 3ec1_A 63 SMLHRIGESKALVVNIVDIFDFNGSFIPGLPRFAADNPILLVGNKADLLPRSVK-YPKLL----RWMRRMAEELGLCPVD 137 (369)
T ss_dssp HHHHHHHHHCCEEEEEEETTCSGGGCCSSHHHHCTTSCEEEEEECGGGSCTTCC-HHHHH----HHHHHHHHTTTCCCSE
T ss_pred HHHHHhhccCcEEEEEEECCCCCCchhhHHHHHhCCCCEEEEEEChhcCCCccC-HHHHH----HHHHHHHHHcCCCccc
Confidence 456555 778899999999883 357889999998753210 00000 0111111111000 01
Q ss_pred ccccchhhHHHHHHHHHHHHHHhcC
Q 018241 208 KDSQSKLKEDAEKAALEKIQQALMD 232 (359)
Q Consensus 208 ~~~~Sa~~~~~~~~ll~~i~~~L~~ 232 (359)
...+||+.+.++.++++.+.+++..
T Consensus 138 v~~iSA~~g~gi~~L~~~I~~~~~~ 162 (369)
T 3ec1_A 138 VCLVSAAKGIGMAKVMEAINRYREG 162 (369)
T ss_dssp EEECBTTTTBTHHHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHhhccc
Confidence 1357899999999999988877643
No 429
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=92.29 E-value=0.099 Score=58.13 Aligned_cols=25 Identities=24% Similarity=0.409 Sum_probs=22.1
Q ss_pred CCcEEEEEecCCCChhHHHHHHHhc
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVVEN 79 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~~~ 79 (359)
.+-.++|||.+|+|||||++.|.|.
T Consensus 443 ~G~~vaivG~sGsGKSTll~ll~~~ 467 (1321)
T 4f4c_A 443 AGQTVALVGSSGCGKSTIISLLLRY 467 (1321)
T ss_dssp TTCEEEEEECSSSCHHHHHHHHTTS
T ss_pred CCcEEEEEecCCCcHHHHHHHhccc
Confidence 4458999999999999999999943
No 430
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=92.05 E-value=0.36 Score=43.82 Aligned_cols=24 Identities=29% Similarity=0.290 Sum_probs=21.4
Q ss_pred CCcEEEEEecCCCChhHHHHHHHh
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVVE 78 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~~ 78 (359)
.+..+.|.|.||+|||||.+++.+
T Consensus 53 ~~~~vll~Gp~GtGKT~la~~la~ 76 (297)
T 3b9p_A 53 PAKGLLLFGPPGNGKTLLARAVAT 76 (297)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHH
T ss_pred CCCeEEEECcCCCCHHHHHHHHHH
Confidence 356899999999999999999984
No 431
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=92.03 E-value=0.18 Score=42.99 Aligned_cols=32 Identities=19% Similarity=0.074 Sum_probs=24.5
Q ss_pred ceEEEEecCCCcCCCCcCcchhhhHhhHHHhcccceEEeec
Q 018241 121 ASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRC 161 (359)
Q Consensus 121 ~~i~lvDtpG~~~~~~~~~~~~~~~l~~i~~aD~il~Vvd~ 161 (359)
..+.++|||+... ......+..+|.+++|++.
T Consensus 76 yD~viiD~~~~~~---------~~~~~~l~~ad~viiv~~~ 107 (206)
T 4dzz_A 76 YDFAIVDGAGSLS---------VITSAAVMVSDLVIIPVTP 107 (206)
T ss_dssp SSEEEEECCSSSS---------HHHHHHHHHCSEEEEEECS
T ss_pred CCEEEEECCCCCC---------HHHHHHHHHCCEEEEEecC
Confidence 5699999998751 1445667789999999886
No 432
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=92.03 E-value=0.076 Score=48.21 Aligned_cols=24 Identities=21% Similarity=0.174 Sum_probs=21.2
Q ss_pred CCcEEEEEecCCCChhHHHHHHHh
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVVE 78 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~~ 78 (359)
.+--++|+|.||+|||||+..+++
T Consensus 29 ~G~i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 29 AGTVGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHH
Confidence 445789999999999999999985
No 433
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=91.98 E-value=0.094 Score=48.46 Aligned_cols=24 Identities=21% Similarity=0.232 Sum_probs=21.3
Q ss_pred CCcEEEEEecCCCChhHHHHHHHh
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVVE 78 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~~ 78 (359)
.+-.|+++|.+||||||++..|.+
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~ 127 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAA 127 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 345899999999999999999984
No 434
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=91.97 E-value=0.097 Score=43.42 Aligned_cols=23 Identities=22% Similarity=0.512 Sum_probs=20.5
Q ss_pred CcEEEEEecCCCChhHHHHHHHh
Q 018241 56 SLRAGIVGLPNVGKSTLFNAVVE 78 (359)
Q Consensus 56 ~~~i~ivG~pn~GKSTL~n~L~~ 78 (359)
...+.|.|.||+|||||++++..
T Consensus 43 ~~~~ll~G~~G~GKT~l~~~~~~ 65 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAIVEGLAQ 65 (195)
T ss_dssp SCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHH
Confidence 45789999999999999999983
No 435
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=91.95 E-value=0.3 Score=44.00 Aligned_cols=24 Identities=29% Similarity=0.307 Sum_probs=21.3
Q ss_pred CCcEEEEEecCCCChhHHHHHHHh
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVVE 78 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~~ 78 (359)
.+..+.|.|.||+|||||.+++.+
T Consensus 50 ~~~~~ll~G~~GtGKT~la~~la~ 73 (285)
T 3h4m_A 50 PPKGILLYGPPGTGKTLLAKAVAT 73 (285)
T ss_dssp CCSEEEEESSSSSSHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHH
Confidence 456799999999999999999983
No 436
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=91.89 E-value=0.1 Score=57.78 Aligned_cols=25 Identities=24% Similarity=0.251 Sum_probs=22.0
Q ss_pred CCcEEEEEecCCCChhHHHHHHHhc
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVVEN 79 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~~~ 79 (359)
.+-.+||||.+|+|||||++.|.|.
T Consensus 415 ~G~~~~ivG~sGsGKSTl~~ll~g~ 439 (1284)
T 3g5u_A 415 SGQTVALVGNSGCGKSTTVQLMQRL 439 (1284)
T ss_dssp TTCEEEEECCSSSSHHHHHHHTTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3458999999999999999999953
No 437
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=91.80 E-value=0.014 Score=52.04 Aligned_cols=22 Identities=32% Similarity=0.321 Sum_probs=19.4
Q ss_pred EEEEEecCCCChhHHHHHHHhc
Q 018241 58 RAGIVGLPNVGKSTLFNAVVEN 79 (359)
Q Consensus 58 ~i~ivG~pn~GKSTL~n~L~~~ 79 (359)
-++|+|++|+|||||+++|++-
T Consensus 29 ~~~i~GpnGsGKSTll~~i~g~ 50 (227)
T 1qhl_A 29 VTTLSGGNGAGKSTTMAAFVTA 50 (227)
T ss_dssp HHHHHSCCSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 3589999999999999999964
No 438
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=91.77 E-value=0.095 Score=46.01 Aligned_cols=22 Identities=27% Similarity=0.238 Sum_probs=20.4
Q ss_pred CcEEEEEecCCCChhHHHHHHH
Q 018241 56 SLRAGIVGLPNVGKSTLFNAVV 77 (359)
Q Consensus 56 ~~~i~ivG~pn~GKSTL~n~L~ 77 (359)
++-|+|-|.+||||||+.+.|.
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~ 27 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLA 27 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHH
Confidence 4679999999999999999997
No 439
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=91.77 E-value=0.069 Score=47.48 Aligned_cols=23 Identities=17% Similarity=0.160 Sum_probs=18.3
Q ss_pred CCcEEEEEecCCCChhHHHHHHH
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVV 77 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~ 77 (359)
.++-|.|-|.+||||||+.+.|.
T Consensus 24 ~g~~I~~eG~~GsGKsT~~~~l~ 46 (227)
T 3v9p_A 24 RGKFITFEGIDGAGKTTHLQWFC 46 (227)
T ss_dssp CCCEEEEECCC---CHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 46789999999999999999998
No 440
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=91.75 E-value=0.11 Score=45.86 Aligned_cols=23 Identities=26% Similarity=0.287 Sum_probs=19.7
Q ss_pred CCcEEEEEecCCCChhHHHHHHH
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVV 77 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~ 77 (359)
.+.-|.|+|.|||||+|....|.
T Consensus 28 k~kiI~llGpPGsGKgTqa~~L~ 50 (217)
T 3umf_A 28 KAKVIFVLGGPGSGKGTQCEKLV 50 (217)
T ss_dssp SCEEEEEECCTTCCHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHH
Confidence 34457788999999999999998
No 441
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=91.75 E-value=0.3 Score=47.63 Aligned_cols=26 Identities=31% Similarity=0.349 Sum_probs=22.4
Q ss_pred ccCCcEEEEEecCCCChhHHHHHHHh
Q 018241 53 ISMSLRAGIVGLPNVGKSTLFNAVVE 78 (359)
Q Consensus 53 ~~~~~~i~ivG~pn~GKSTL~n~L~~ 78 (359)
...+.-|.+.|+||+|||+|..++.+
T Consensus 212 ~~~prGvLL~GPPGtGKTllAkAiA~ 237 (437)
T 4b4t_L 212 IKPPKGVLLYGPPGTGKTLLAKAVAA 237 (437)
T ss_dssp CCCCCEEEEESCTTSSHHHHHHHHHH
T ss_pred CCCCCeEEEECCCCCcHHHHHHHHHH
Confidence 34456799999999999999999994
No 442
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=91.61 E-value=0.11 Score=57.67 Aligned_cols=36 Identities=25% Similarity=0.315 Sum_probs=28.5
Q ss_pred CcEEEEEecCCCChhHHHHHHHhccccccCCCCceeccceeEEEEeCC
Q 018241 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPD 103 (359)
Q Consensus 56 ~~~i~ivG~pn~GKSTL~n~L~~~~~~~~~~~p~tT~~~~~g~~~~~~ 103 (359)
+-++||||++|+|||||++.|.|-. +|..|.+.+++
T Consensus 1059 Ge~v~ivG~sGsGKSTl~~~l~g~~------------~p~~G~I~i~g 1094 (1284)
T 3g5u_A 1059 GQTLALVGSSGCGKSTVVQLLERFY------------DPMAGSVFLDG 1094 (1284)
T ss_dssp SSEEEEECSSSTTHHHHHHHHTTSS------------CCSEEEEESSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCc------------CCCCCEEEECC
Confidence 4589999999999999999999432 25667777664
No 443
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=91.61 E-value=0.11 Score=46.38 Aligned_cols=24 Identities=29% Similarity=0.410 Sum_probs=21.0
Q ss_pred CcEEEEEecCCCChhHHHHHHHhc
Q 018241 56 SLRAGIVGLPNVGKSTLFNAVVEN 79 (359)
Q Consensus 56 ~~~i~ivG~pn~GKSTL~n~L~~~ 79 (359)
+..+.|+|.||+|||||.+++.+.
T Consensus 45 ~~~vll~G~~GtGKT~la~~la~~ 68 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLAKAIAGE 68 (257)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHHH
Confidence 346999999999999999999843
No 444
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=91.52 E-value=0.065 Score=48.25 Aligned_cols=24 Identities=29% Similarity=0.290 Sum_probs=21.3
Q ss_pred cCCcEEEEEecCCCChhHHHHHHH
Q 018241 54 SMSLRAGIVGLPNVGKSTLFNAVV 77 (359)
Q Consensus 54 ~~~~~i~ivG~pn~GKSTL~n~L~ 77 (359)
..++.|+|.|.+||||||+.+.|.
T Consensus 22 ~~~~~I~ieG~~GsGKST~~~~L~ 45 (263)
T 1p5z_B 22 TRIKKISIEGNIAAGKSTFVNILK 45 (263)
T ss_dssp -CCEEEEEECSTTSSHHHHHTTTG
T ss_pred cCceEEEEECCCCCCHHHHHHHHH
Confidence 345789999999999999999998
No 445
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=91.50 E-value=0.093 Score=56.29 Aligned_cols=26 Identities=38% Similarity=0.519 Sum_probs=22.3
Q ss_pred CCcEEEEEecCCCChhHHHHHHHhcc
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVVENG 80 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~~~~ 80 (359)
.+-.++|+|..|+|||||++.|+|+.
T Consensus 460 ~Ge~v~LiGpNGsGKSTLLk~LagG~ 485 (986)
T 2iw3_A 460 RARRYGICGPNGCGKSTLMRAIANGQ 485 (986)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34579999999999999999999643
No 446
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=91.31 E-value=0.22 Score=48.89 Aligned_cols=23 Identities=22% Similarity=0.478 Sum_probs=20.6
Q ss_pred CcEEEEEecCCCChhHHHHHHHh
Q 018241 56 SLRAGIVGLPNVGKSTLFNAVVE 78 (359)
Q Consensus 56 ~~~i~ivG~pn~GKSTL~n~L~~ 78 (359)
...+.|+|.||+|||+|.++|..
T Consensus 201 ~~~~LL~G~pG~GKT~la~~la~ 223 (468)
T 3pxg_A 201 KNNPVLIGEPGVGKTAIAEGLAQ 223 (468)
T ss_dssp SCEEEEESCTTTTTHHHHHHHHH
T ss_pred CCCeEEECCCCCCHHHHHHHHHH
Confidence 35789999999999999999984
No 447
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=91.24 E-value=0.42 Score=43.51 Aligned_cols=23 Identities=26% Similarity=0.401 Sum_probs=20.4
Q ss_pred CCcEEEEEecCCCChhHHHHHHH
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVV 77 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~ 77 (359)
....+.|.|.||+|||+|..++.
T Consensus 66 ~~~~vll~G~~GtGKT~la~~la 88 (309)
T 3syl_A 66 PTLHMSFTGNPGTGKTTVALKMA 88 (309)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHH
Confidence 34579999999999999999887
No 448
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=91.24 E-value=0.065 Score=53.33 Aligned_cols=23 Identities=39% Similarity=0.486 Sum_probs=20.6
Q ss_pred cEEEEEecCCCChhHHHHHHHhc
Q 018241 57 LRAGIVGLPNVGKSTLFNAVVEN 79 (359)
Q Consensus 57 ~~i~ivG~pn~GKSTL~n~L~~~ 79 (359)
.-|.|+|.||+|||||++++.+.
T Consensus 65 ~GvLL~GppGtGKTtLaraIa~~ 87 (499)
T 2dhr_A 65 KGVLLVGPPGVGKTHLARAVAGE 87 (499)
T ss_dssp SEEEEECSSSSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 35999999999999999999954
No 449
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=91.23 E-value=0.053 Score=58.14 Aligned_cols=25 Identities=36% Similarity=0.570 Sum_probs=21.9
Q ss_pred CCcEEEEEecCCCChhHHHHHHHhc
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVVEN 79 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~~~ 79 (359)
.+-.++|+|..|+|||||++.|+|.
T Consensus 698 ~GeivaIiGpNGSGKSTLLklLaGl 722 (986)
T 2iw3_A 698 LSSRIAVIGPNGAGKSTLINVLTGE 722 (986)
T ss_dssp TTCEEEECSCCCHHHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3447999999999999999999954
No 450
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=91.09 E-value=0.13 Score=47.84 Aligned_cols=24 Identities=21% Similarity=0.308 Sum_probs=21.1
Q ss_pred CCcEEEEEecCCCChhHHHHHHHh
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVVE 78 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~~ 78 (359)
++-.|+++|.+|+||||++..|.+
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~ 126 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAK 126 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHH
Confidence 345799999999999999999984
No 451
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=91.08 E-value=0.13 Score=45.47 Aligned_cols=22 Identities=36% Similarity=0.400 Sum_probs=20.4
Q ss_pred CcEEEEEecCCCChhHHHHHHH
Q 018241 56 SLRAGIVGLPNVGKSTLFNAVV 77 (359)
Q Consensus 56 ~~~i~ivG~pn~GKSTL~n~L~ 77 (359)
++.|+|.|.+||||||+.+.|.
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~ 23 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLT 23 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHH
Confidence 4679999999999999999998
No 452
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=90.94 E-value=0.13 Score=48.63 Aligned_cols=23 Identities=30% Similarity=0.304 Sum_probs=20.5
Q ss_pred CcEEEEEecCCCChhHHHHHHHh
Q 018241 56 SLRAGIVGLPNVGKSTLFNAVVE 78 (359)
Q Consensus 56 ~~~i~ivG~pn~GKSTL~n~L~~ 78 (359)
...|+|+|.++||||||...|..
T Consensus 7 ~~lI~I~GptgSGKTtla~~La~ 29 (340)
T 3d3q_A 7 PFLIVIVGPTASGKTELSIEVAK 29 (340)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred CceEEEECCCcCcHHHHHHHHHH
Confidence 34799999999999999999983
No 453
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=90.89 E-value=0.11 Score=44.89 Aligned_cols=22 Identities=27% Similarity=0.409 Sum_probs=20.3
Q ss_pred CcEEEEEecCCCChhHHHHHHH
Q 018241 56 SLRAGIVGLPNVGKSTLFNAVV 77 (359)
Q Consensus 56 ~~~i~ivG~pn~GKSTL~n~L~ 77 (359)
++.|+|+|.+|+||||+.+.|.
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~ 24 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVA 24 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHH
Confidence 4679999999999999999998
No 454
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=90.89 E-value=0.051 Score=52.25 Aligned_cols=23 Identities=22% Similarity=0.215 Sum_probs=20.4
Q ss_pred CCcEEEEEecCCCChhHHHHHHHh
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVVE 78 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~~ 78 (359)
.+ .++|+|.+|+|||||+++|.+
T Consensus 60 ~G-~~~lvG~NGaGKStLl~aI~~ 82 (415)
T 4aby_A 60 GG-FCAFTGETGAGKSIIVDALGL 82 (415)
T ss_dssp SS-EEEEEESHHHHHHHHTHHHHH
T ss_pred CC-cEEEECCCCCCHHHHHHHHHH
Confidence 44 899999999999999999963
No 455
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=90.85 E-value=0.67 Score=43.00 Aligned_cols=25 Identities=32% Similarity=0.273 Sum_probs=21.5
Q ss_pred CCcEEEEEecCCCChhHHHHHHHhc
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVVEN 79 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~~~ 79 (359)
.+..|.|.|.||+|||+|..++.+.
T Consensus 44 ~~~~iLL~GppGtGKT~la~ala~~ 68 (322)
T 1xwi_A 44 PWRGILLFGPPGTGKSYLAKAVATE 68 (322)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHH
T ss_pred CCceEEEECCCCccHHHHHHHHHHH
Confidence 3457999999999999999999843
No 456
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=90.74 E-value=0.13 Score=45.92 Aligned_cols=22 Identities=41% Similarity=0.400 Sum_probs=20.4
Q ss_pred CcEEEEEecCCCChhHHHHHHH
Q 018241 56 SLRAGIVGLPNVGKSTLFNAVV 77 (359)
Q Consensus 56 ~~~i~ivG~pn~GKSTL~n~L~ 77 (359)
+.-|+|.|.+||||||+.+.|.
T Consensus 27 ~~~i~~eG~~GsGKsT~~~~l~ 48 (236)
T 3lv8_A 27 AKFIVIEGLEGAGKSTAIQVVV 48 (236)
T ss_dssp CCEEEEEESTTSCHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 4689999999999999999998
No 457
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=90.66 E-value=0.14 Score=47.91 Aligned_cols=24 Identities=21% Similarity=0.289 Sum_probs=21.1
Q ss_pred CCcEEEEEecCCCChhHHHHHHHh
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVVE 78 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~~ 78 (359)
|...|.|+|.|+||||||...|..
T Consensus 4 m~~~i~i~GptGsGKTtla~~La~ 27 (323)
T 3crm_A 4 LPPAIFLMGPTAAGKTDLAMALAD 27 (323)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 445799999999999999999983
No 458
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=90.63 E-value=0.14 Score=48.84 Aligned_cols=24 Identities=21% Similarity=0.329 Sum_probs=21.4
Q ss_pred cCCcEEEEEecCCCChhHHHHHHH
Q 018241 54 SMSLRAGIVGLPNVGKSTLFNAVV 77 (359)
Q Consensus 54 ~~~~~i~ivG~pn~GKSTL~n~L~ 77 (359)
....||.|+|.+++|||||+..+-
T Consensus 31 ~~~~killlG~~~SGKST~~kq~~ 54 (362)
T 1zcb_A 31 ARLVKILLLGAGESGKSTFLKQMR 54 (362)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHH
T ss_pred cCccEEEEECCCCCcHHHHHHHHH
Confidence 456899999999999999999884
No 459
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=90.60 E-value=0.36 Score=47.09 Aligned_cols=27 Identities=30% Similarity=0.338 Sum_probs=22.7
Q ss_pred ccCCcEEEEEecCCCChhHHHHHHHhc
Q 018241 53 ISMSLRAGIVGLPNVGKSTLFNAVVEN 79 (359)
Q Consensus 53 ~~~~~~i~ivG~pn~GKSTL~n~L~~~ 79 (359)
...+.-|.+.|+||+|||+|..++.+.
T Consensus 212 ~~~prGvLLyGPPGTGKTllAkAiA~e 238 (434)
T 4b4t_M 212 IRAPKGALMYGPPGTGKTLLARACAAQ 238 (434)
T ss_dssp CCCCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CCCCCeeEEECcCCCCHHHHHHHHHHH
Confidence 344567999999999999999999943
No 460
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=90.54 E-value=0.13 Score=44.60 Aligned_cols=20 Identities=35% Similarity=0.542 Sum_probs=18.2
Q ss_pred EEEEEecCCCChhHHHHHHH
Q 018241 58 RAGIVGLPNVGKSTLFNAVV 77 (359)
Q Consensus 58 ~i~ivG~pn~GKSTL~n~L~ 77 (359)
-.+|+|..|+||||++.+|.
T Consensus 25 ~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 25 INLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred eEEEEcCCCCCHHHHHHHHH
Confidence 56889999999999999986
No 461
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=90.54 E-value=0.15 Score=43.49 Aligned_cols=22 Identities=27% Similarity=0.283 Sum_probs=20.3
Q ss_pred cEEEEEecCCCChhHHHHHHHh
Q 018241 57 LRAGIVGLPNVGKSTLFNAVVE 78 (359)
Q Consensus 57 ~~i~ivG~pn~GKSTL~n~L~~ 78 (359)
..+.|.|.||+|||||..++.+
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~ 76 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIAN 76 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 6899999999999999999983
No 462
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=90.51 E-value=0.42 Score=46.51 Aligned_cols=25 Identities=28% Similarity=0.367 Sum_probs=21.5
Q ss_pred cCCcEEEEEecCCCChhHHHHHHHh
Q 018241 54 SMSLRAGIVGLPNVGKSTLFNAVVE 78 (359)
Q Consensus 54 ~~~~~i~ivG~pn~GKSTL~n~L~~ 78 (359)
..+.-|.+.|+||+|||+|..++.+
T Consensus 204 ~~prGiLL~GPPGtGKT~lakAiA~ 228 (428)
T 4b4t_K 204 DPPRGVLLYGPPGTGKTMLVKAVAN 228 (428)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHH
Confidence 3445699999999999999999994
No 463
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=90.50 E-value=0.16 Score=44.10 Aligned_cols=24 Identities=17% Similarity=0.144 Sum_probs=21.4
Q ss_pred CCcEEEEEecCCCChhHHHHHHHh
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVVE 78 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~~ 78 (359)
....+.|.|.||+|||||..++..
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~ 74 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACA 74 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999999983
No 464
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=90.49 E-value=0.13 Score=48.62 Aligned_cols=25 Identities=16% Similarity=0.149 Sum_probs=21.6
Q ss_pred CCcEEEEEecCCCChhHHHHHHHhc
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVVEN 79 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~~~ 79 (359)
.+--++|+|.||+|||||++.+++.
T Consensus 130 ~G~i~~I~G~~GsGKTTL~~~l~~~ 154 (349)
T 1pzn_A 130 TQAITEVFGEFGSGKTQLAHTLAVM 154 (349)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3457999999999999999999954
No 465
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=90.42 E-value=0.14 Score=44.90 Aligned_cols=23 Identities=17% Similarity=0.187 Sum_probs=19.3
Q ss_pred CCcEEEEEecCCCChhHHHHHHH
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVV 77 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~ 77 (359)
.+--++|+|.||+|||||...++
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~~~ 44 (247)
T 2dr3_A 22 ERNVVLLSGGPGTGKTIFSQQFL 44 (247)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHH
Confidence 34468999999999999987776
No 466
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=90.30 E-value=0.12 Score=47.53 Aligned_cols=23 Identities=17% Similarity=0.202 Sum_probs=17.6
Q ss_pred CcEEEEEecCCCChhHHHHHHHh
Q 018241 56 SLRAGIVGLPNVGKSTLFNAVVE 78 (359)
Q Consensus 56 ~~~i~ivG~pn~GKSTL~n~L~~ 78 (359)
.+.|||.|.+||||||+.+.|..
T Consensus 5 ~~iIgItG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 5 HPIISVTGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp SCEEEEESCC---CCTHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999999999973
No 467
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=90.21 E-value=0.15 Score=49.31 Aligned_cols=23 Identities=30% Similarity=0.400 Sum_probs=20.6
Q ss_pred CCcEEEEEecCCCChhHHHHHHH
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVV 77 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~ 77 (359)
.+.-|.++|.|||||||+.++|.
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~ 279 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHL 279 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHT
T ss_pred CCEEEEEECCCCCCHHHHHHHHH
Confidence 44678999999999999999998
No 468
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=90.17 E-value=0.14 Score=42.47 Aligned_cols=24 Identities=21% Similarity=0.371 Sum_probs=20.8
Q ss_pred CCcEEEEEecCCCChhHHHHHHHh
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVVE 78 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~~ 78 (359)
....+.|.|.||+|||||..++..
T Consensus 42 ~~~~vll~G~~G~GKT~la~~~~~ 65 (187)
T 2p65_A 42 TKNNPILLGDPGVGKTAIVEGLAI 65 (187)
T ss_dssp SSCEEEEESCGGGCHHHHHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHH
Confidence 345789999999999999999983
No 469
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=90.15 E-value=0.12 Score=45.85 Aligned_cols=23 Identities=22% Similarity=0.218 Sum_probs=21.0
Q ss_pred CCcEEEEEecCCCChhHHHHHHH
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVV 77 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~ 77 (359)
.++-|.|.|.+||||||+.+.|.
T Consensus 20 ~~~~i~~~G~~g~GKst~~~~l~ 42 (223)
T 3ld9_A 20 GSMFITFEGIDGSGKTTQSHLLA 42 (223)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 45789999999999999999998
No 470
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=90.13 E-value=0.085 Score=54.37 Aligned_cols=22 Identities=36% Similarity=0.537 Sum_probs=19.1
Q ss_pred CcEEEEEecCCCChhHHHHHHH
Q 018241 56 SLRAGIVGLPNVGKSTLFNAVV 77 (359)
Q Consensus 56 ~~~i~ivG~pn~GKSTL~n~L~ 77 (359)
+-.++|+|.+|||||||+|.++
T Consensus 348 Ge~vaIiGpnGsGKSTLl~~i~ 369 (670)
T 3ux8_A 348 GTFVAVTGVSGSGKSTLVNEVL 369 (670)
T ss_dssp TSEEEEECSTTSSHHHHHTTTH
T ss_pred CCEEEEEeeCCCCHHHHHHHHH
Confidence 3468999999999999998765
No 471
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=89.94 E-value=0.17 Score=44.37 Aligned_cols=22 Identities=45% Similarity=0.410 Sum_probs=20.2
Q ss_pred CcEEEEEecCCCChhHHHHHHH
Q 018241 56 SLRAGIVGLPNVGKSTLFNAVV 77 (359)
Q Consensus 56 ~~~i~ivG~pn~GKSTL~n~L~ 77 (359)
++-|.|-|.+||||||+.+.|.
T Consensus 3 g~~i~~eG~~gsGKsT~~~~l~ 24 (213)
T 4tmk_A 3 SKYIVIEGLEGAGKTTARNVVV 24 (213)
T ss_dssp CCEEEEEECTTSCHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 4679999999999999999998
No 472
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=89.84 E-value=0.12 Score=45.32 Aligned_cols=20 Identities=25% Similarity=0.197 Sum_probs=18.9
Q ss_pred EEEEEecCCCChhHHHHHHH
Q 018241 58 RAGIVGLPNVGKSTLFNAVV 77 (359)
Q Consensus 58 ~i~ivG~pn~GKSTL~n~L~ 77 (359)
.+.+.|+||+||||++.+|.
T Consensus 60 ~ili~GPPGtGKTt~a~ala 79 (212)
T 1tue_A 60 CLVFCGPANTGKSYFGMSFI 79 (212)
T ss_dssp EEEEESCGGGCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 59999999999999999998
No 473
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=89.74 E-value=0.16 Score=50.75 Aligned_cols=22 Identities=14% Similarity=0.172 Sum_probs=19.4
Q ss_pred CCcEEEEEecCCCChhHHHHHH
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAV 76 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L 76 (359)
.+-.++|+|.+|||||||++.+
T Consensus 38 ~Ge~~~l~G~nGsGKSTL~~~~ 59 (525)
T 1tf7_A 38 IGRSTLVSGTSGTGKTLFSIQF 59 (525)
T ss_dssp TTSEEEEEESTTSSHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHH
Confidence 4457999999999999999994
No 474
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=89.53 E-value=0.47 Score=45.74 Aligned_cols=27 Identities=30% Similarity=0.378 Sum_probs=22.5
Q ss_pred ccCCcEEEEEecCCCChhHHHHHHHhc
Q 018241 53 ISMSLRAGIVGLPNVGKSTLFNAVVEN 79 (359)
Q Consensus 53 ~~~~~~i~ivG~pn~GKSTL~n~L~~~ 79 (359)
...+.-|.+.|+||+|||+|..++.+.
T Consensus 179 i~~prGvLL~GPPGTGKTllAkAiA~e 205 (405)
T 4b4t_J 179 IAQPKGVILYGPPGTGKTLLARAVAHH 205 (405)
T ss_dssp CCCCCCEEEESCSSSSHHHHHHHHHHH
T ss_pred CCCCCceEEeCCCCCCHHHHHHHHHHh
Confidence 334567999999999999999999943
No 475
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=89.51 E-value=0.18 Score=47.83 Aligned_cols=23 Identities=30% Similarity=0.466 Sum_probs=20.7
Q ss_pred CcEEEEEecCCCChhHHHHHHHh
Q 018241 56 SLRAGIVGLPNVGKSTLFNAVVE 78 (359)
Q Consensus 56 ~~~i~ivG~pn~GKSTL~n~L~~ 78 (359)
.+.|+|+|.||+||||+..+|.+
T Consensus 24 ~~~i~l~G~~G~GKTTl~~~la~ 46 (359)
T 2ga8_A 24 RVCVILVGSPGSGKSTIAEELCQ 46 (359)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred eeEEEEECCCCCcHHHHHHHHHH
Confidence 35799999999999999999984
No 476
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=89.49 E-value=0.16 Score=47.21 Aligned_cols=20 Identities=35% Similarity=0.527 Sum_probs=19.0
Q ss_pred EEEEEecCCCChhHHHHHHH
Q 018241 58 RAGIVGLPNVGKSTLFNAVV 77 (359)
Q Consensus 58 ~i~ivG~pn~GKSTL~n~L~ 77 (359)
-.+|+|.+|+|||||+.+|.
T Consensus 26 ~~~i~G~NGsGKS~ll~ai~ 45 (322)
T 1e69_A 26 VTAIVGPNGSGKSNIIDAIK 45 (322)
T ss_dssp EEEEECCTTTCSTHHHHHHH
T ss_pred cEEEECCCCCcHHHHHHHHH
Confidence 67899999999999999998
No 477
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=89.41 E-value=0.81 Score=39.48 Aligned_cols=32 Identities=6% Similarity=-0.075 Sum_probs=23.9
Q ss_pred ceEEEEecCCC-cCCCCcCcchhhhHhhHHHhcccceEEeec
Q 018241 121 ASVEFVDIAGL-VKGASQGEGLGNKFLSHIREVDSILQVVRC 161 (359)
Q Consensus 121 ~~i~lvDtpG~-~~~~~~~~~~~~~~l~~i~~aD~il~Vvd~ 161 (359)
..++++|||+. ... .....+..||.++++++.
T Consensus 68 yD~viiD~p~~~~~~---------~~~~~l~~aD~viiv~~~ 100 (209)
T 3cwq_A 68 YQNIVIDTQARPEDE---------DLEALADGCDLLVIPSTP 100 (209)
T ss_dssp CSEEEEEEECCCSSS---------HHHHHHHTSSEEEEEECS
T ss_pred CCEEEEeCCCCcCcH---------HHHHHHHHCCEEEEEecC
Confidence 46999999987 321 345567789999998875
No 478
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=89.38 E-value=0.32 Score=43.93 Aligned_cols=73 Identities=16% Similarity=0.134 Sum_probs=45.6
Q ss_pred hhHhhHHHhcccceEEeecCCC------------ccEEEeCCcccCCcchHHHHhhhhhccHHHHHHHHHHHhhh-cccc
Q 018241 143 NKFLSHIREVDSILQVVRCFED------------NDIVHVNGKVDPKSDVDVINLELVFSDLDQIEKRMEKLKKG-KAKD 209 (359)
Q Consensus 143 ~~~l~~i~~aD~il~Vvd~~~~------------~~v~~v~nk~d~~~~~~~i~~el~~~d~~~l~~~~~~~~~~-~~~~ 209 (359)
+++...+.++|++++|+|+.++ .+.+.+.||+|.+... .+ +.....+... .. .
T Consensus 13 ~~~~~~l~~~D~vl~VvDar~P~~~~~~~l~ll~k~~iivlNK~DL~~~~-~~------------~~~~~~~~~~g~~-v 78 (262)
T 3cnl_A 13 RQIKDLLRLVNTVVEVRDARAPFATSAYGVDFSRKETIILLNKVDIADEK-TT------------KKWVEFFKKQGKR-V 78 (262)
T ss_dssp HHHHHHHTTCSEEEEEEETTSTTTTSCTTSCCTTSEEEEEEECGGGSCHH-HH------------HHHHHHHHHTTCC-E
T ss_pred HHHHHHHhhCCEEEEEeeCCCCCcCcChHHHhcCCCcEEEEECccCCCHH-HH------------HHHHHHHHHcCCe-E
Confidence 4788999999999999998752 2467888999977431 11 1111111111 11 1
Q ss_pred ccchhhHHHHHHHHHHHHHH
Q 018241 210 SQSKLKEDAEKAALEKIQQA 229 (359)
Q Consensus 210 ~~Sa~~~~~~~~ll~~i~~~ 229 (359)
.+||+.+.++.++++.+.+.
T Consensus 79 ~iSa~~~~gi~~L~~~l~~~ 98 (262)
T 3cnl_A 79 ITTHKGEPRKVLLKKLSFDR 98 (262)
T ss_dssp EECCTTSCHHHHHHHHCCCT
T ss_pred EEECCCCcCHHHHHHHHHHh
Confidence 46778887777776655443
No 479
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=88.99 E-value=0.26 Score=39.97 Aligned_cols=23 Identities=17% Similarity=0.218 Sum_probs=20.9
Q ss_pred CCcEEEEEecCCCChhHHHHHHH
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVV 77 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~ 77 (359)
....|.|.|.||+|||++..++.
T Consensus 23 ~~~~vll~G~~GtGKt~lA~~i~ 45 (145)
T 3n70_A 23 TDIAVWLYGAPGTGRMTGARYLH 45 (145)
T ss_dssp CCSCEEEESSTTSSHHHHHHHHH
T ss_pred CCCCEEEECCCCCCHHHHHHHHH
Confidence 44679999999999999999998
No 480
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=88.98 E-value=0.19 Score=47.13 Aligned_cols=20 Identities=35% Similarity=0.542 Sum_probs=17.9
Q ss_pred EEEEEecCCCChhHHHHHHH
Q 018241 58 RAGIVGLPNVGKSTLFNAVV 77 (359)
Q Consensus 58 ~i~ivG~pn~GKSTL~n~L~ 77 (359)
-.+|+|.+|+|||||+.|++
T Consensus 25 ~~~i~G~NGsGKS~lleAi~ 44 (339)
T 3qkt_A 25 INLIIGQNGSGKSSLLDAIL 44 (339)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 45799999999999999986
No 481
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=88.96 E-value=0.19 Score=48.73 Aligned_cols=23 Identities=30% Similarity=0.387 Sum_probs=20.5
Q ss_pred CcEEEEEecCCCChhHHHHHHHh
Q 018241 56 SLRAGIVGLPNVGKSTLFNAVVE 78 (359)
Q Consensus 56 ~~~i~ivG~pn~GKSTL~n~L~~ 78 (359)
+--++|+|+.|+|||||++++.+
T Consensus 26 ~~~~~i~G~nG~GKstll~ai~~ 48 (430)
T 1w1w_A 26 SNFTSIIGPNGSGKSNMMDAISF 48 (430)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 34679999999999999999985
No 482
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=88.95 E-value=0.6 Score=44.34 Aligned_cols=83 Identities=14% Similarity=0.119 Sum_probs=47.9
Q ss_pred hHhhHH-HhcccceEEeecCC--------------CccEEEeCCcccCCcchHHHHhhhhhccHHHHHHHHHHHhhh-cc
Q 018241 144 KFLSHI-REVDSILQVVRCFE--------------DNDIVHVNGKVDPKSDVDVINLELVFSDLDQIEKRMEKLKKG-KA 207 (359)
Q Consensus 144 ~~l~~i-~~aD~il~Vvd~~~--------------~~~v~~v~nk~d~~~~~~~i~~el~~~d~~~l~~~~~~~~~~-~~ 207 (359)
+++.++ +.+|++++|+|+++ +.+++.+.||+|...+... ..++. +.+.......... ..
T Consensus 61 ~~l~~i~~~~~~il~VvD~~d~~~~~~~~l~~~~~~~p~ilV~NK~DL~~~~~~-~~~~~----~~l~~~~~~~g~~~~~ 135 (368)
T 3h2y_A 61 RILNGIGKSDALVVKIVDIFDFNGSWLPGLHRFVGNNKVLLVGNKADLIPKSVK-HDKVK----HWMRYSAKQLGLKPED 135 (368)
T ss_dssp HHHHHHHHSCCEEEEEEETTSHHHHCCTTHHHHSSSSCEEEEEECGGGSCTTSC-HHHHH----HHHHHHHHHTTCCCSE
T ss_pred HHHHHHhccCcEEEEEEECCCCcccHHHHHHHHhCCCcEEEEEEChhcCCcccC-HHHHH----HHHHHHHHHcCCCccc
Confidence 444444 46679999999987 2467899999998643210 01000 0111111111100 01
Q ss_pred ccccchhhHHHHHHHHHHHHHHhc
Q 018241 208 KDSQSKLKEDAEKAALEKIQQALM 231 (359)
Q Consensus 208 ~~~~Sa~~~~~~~~ll~~i~~~L~ 231 (359)
...+||+++.++.++++.+.+...
T Consensus 136 v~~iSA~~g~gi~~L~~~l~~~~~ 159 (368)
T 3h2y_A 136 VFLISAAKGQGIAELADAIEYYRG 159 (368)
T ss_dssp EEECCTTTCTTHHHHHHHHHHHHT
T ss_pred EEEEeCCCCcCHHHHHhhhhhhcc
Confidence 135789999999999988877664
No 483
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=88.93 E-value=0.25 Score=43.04 Aligned_cols=23 Identities=35% Similarity=0.294 Sum_probs=20.7
Q ss_pred CCcEEEEEecCCCChhHHHHHHH
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVV 77 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~ 77 (359)
.+.-|.|+|.|++|||||...|.
T Consensus 33 ~g~~ilI~GpsGsGKStLA~~La 55 (205)
T 2qmh_A 33 YGLGVLITGDSGVGKSETALELV 55 (205)
T ss_dssp TTEEEEEECCCTTTTHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHH
Confidence 34579999999999999999998
No 484
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=88.89 E-value=0.2 Score=42.98 Aligned_cols=22 Identities=18% Similarity=0.223 Sum_probs=19.7
Q ss_pred cEEEEEecCCCChhHHHHHHHh
Q 018241 57 LRAGIVGLPNVGKSTLFNAVVE 78 (359)
Q Consensus 57 ~~i~ivG~pn~GKSTL~n~L~~ 78 (359)
.-+.|.|.||+|||||+.++..
T Consensus 46 ~~~ll~G~~G~GKT~l~~~~~~ 67 (250)
T 1njg_A 46 HAYLFSGTRGVGKTSIARLLAK 67 (250)
T ss_dssp SEEEEECSTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999984
No 485
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=88.74 E-value=0.21 Score=48.77 Aligned_cols=25 Identities=32% Similarity=0.273 Sum_probs=21.6
Q ss_pred CCcEEEEEecCCCChhHHHHHHHhc
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVVEN 79 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~~~ 79 (359)
....|.|.|.||+|||+|..++.+.
T Consensus 166 ~~~~vLL~GppGtGKT~lA~aia~~ 190 (444)
T 2zan_A 166 PWRGILLFGPPGTGKSYLAKAVATE 190 (444)
T ss_dssp CCSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHH
Confidence 3457999999999999999999843
No 486
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=88.69 E-value=0.17 Score=47.09 Aligned_cols=21 Identities=29% Similarity=0.276 Sum_probs=19.5
Q ss_pred EEEEEecCCCChhHHHHHHHh
Q 018241 58 RAGIVGLPNVGKSTLFNAVVE 78 (359)
Q Consensus 58 ~i~ivG~pn~GKSTL~n~L~~ 78 (359)
.+.|.|.+|+|||||++++.+
T Consensus 38 ~~ll~Gp~G~GKTtl~~~la~ 58 (354)
T 1sxj_E 38 HLLLYGPNGTGKKTRCMALLE 58 (354)
T ss_dssp CEEEECSTTSSHHHHHHTHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 399999999999999999985
No 487
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=88.63 E-value=0.3 Score=42.95 Aligned_cols=23 Identities=30% Similarity=0.242 Sum_probs=21.1
Q ss_pred CCcEEEEEecCCCChhHHHHHHH
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVV 77 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~ 77 (359)
.+.-|.+-|.+||||||+.+.|.
T Consensus 4 ~g~~i~~eG~~g~GKst~~~~l~ 26 (216)
T 3tmk_A 4 RGKLILIEGLDRTGKTTQCNILY 26 (216)
T ss_dssp CCCEEEEEECSSSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 45789999999999999999998
No 488
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=88.61 E-value=0.85 Score=42.89 Aligned_cols=24 Identities=17% Similarity=0.241 Sum_probs=21.4
Q ss_pred CCcEEEEEecCCCChhHHHHHHHh
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVVE 78 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~~ 78 (359)
....|.|.|.||+|||+|..++..
T Consensus 116 ~~~~vLl~GppGtGKT~la~aia~ 139 (357)
T 3d8b_A 116 PPKGILLFGPPGTGKTLIGKCIAS 139 (357)
T ss_dssp CCSEEEEESSTTSSHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999999983
No 489
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=88.60 E-value=0.22 Score=46.54 Aligned_cols=24 Identities=25% Similarity=0.307 Sum_probs=21.1
Q ss_pred CCcEEEEEecCCCChhHHHHHHHh
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVVE 78 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~~ 78 (359)
.+..+.|.|.||+|||||++++.+
T Consensus 44 ~~~~vli~G~~G~GKTtl~~~l~~ 67 (386)
T 2qby_A 44 KPNNIFIYGLTGTGKTAVVKFVLS 67 (386)
T ss_dssp CCCCEEEEECTTSSHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHH
Confidence 345789999999999999999984
No 490
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=88.47 E-value=0.62 Score=45.72 Aligned_cols=27 Identities=26% Similarity=0.271 Sum_probs=22.8
Q ss_pred ccCCcEEEEEecCCCChhHHHHHHHhc
Q 018241 53 ISMSLRAGIVGLPNVGKSTLFNAVVEN 79 (359)
Q Consensus 53 ~~~~~~i~ivG~pn~GKSTL~n~L~~~ 79 (359)
...+.-|.+.|+||+|||+|..++.+.
T Consensus 240 i~pprGILLyGPPGTGKTlLAkAiA~e 266 (467)
T 4b4t_H 240 IDPPKGILLYGPPGTGKTLCARAVANR 266 (467)
T ss_dssp CCCCSEEEECSCTTSSHHHHHHHHHHH
T ss_pred CCCCCceEeeCCCCCcHHHHHHHHHhc
Confidence 345568999999999999999999943
No 491
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=88.39 E-value=0.23 Score=42.08 Aligned_cols=21 Identities=24% Similarity=0.279 Sum_probs=19.3
Q ss_pred EEEEEecCCCChhHHHHHHHh
Q 018241 58 RAGIVGLPNVGKSTLFNAVVE 78 (359)
Q Consensus 58 ~i~ivG~pn~GKSTL~n~L~~ 78 (359)
.+.|.|.||+|||||..++..
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~ 60 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALAR 60 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 499999999999999999983
No 492
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=88.33 E-value=0.26 Score=49.24 Aligned_cols=23 Identities=26% Similarity=0.364 Sum_probs=20.6
Q ss_pred CCcEEEEEecCCCChhHHHHHHH
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVV 77 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~ 77 (359)
+..-|.++|.||+||||+.+.|.
T Consensus 34 ~~~lIvlvGlpGSGKSTia~~La 56 (520)
T 2axn_A 34 SPTVIVMVGLPARGKTYISKKLT 56 (520)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 44679999999999999999997
No 493
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=88.27 E-value=0.74 Score=44.74 Aligned_cols=27 Identities=30% Similarity=0.368 Sum_probs=22.7
Q ss_pred ccCCcEEEEEecCCCChhHHHHHHHhc
Q 018241 53 ISMSLRAGIVGLPNVGKSTLFNAVVEN 79 (359)
Q Consensus 53 ~~~~~~i~ivG~pn~GKSTL~n~L~~~ 79 (359)
...+.-|.+.|+||+|||+|..++.+.
T Consensus 213 i~~prGvLLyGPPGTGKTlLAkAiA~e 239 (437)
T 4b4t_I 213 IKPPKGVILYGAPGTGKTLLAKAVANQ 239 (437)
T ss_dssp CCCCSEEEEESSTTTTHHHHHHHHHHH
T ss_pred CCCCCCCceECCCCchHHHHHHHHHHH
Confidence 334567999999999999999999943
No 494
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=88.21 E-value=0.27 Score=46.82 Aligned_cols=25 Identities=28% Similarity=0.307 Sum_probs=21.7
Q ss_pred CCcEEEEEecCCCChhHHHHHHHhc
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVVEN 79 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~~~ 79 (359)
....|.|.|.||+|||+|..++...
T Consensus 147 ~~~~vLL~GppGtGKT~la~aia~~ 171 (389)
T 3vfd_A 147 PARGLLLFGPPGNGKTMLAKAVAAE 171 (389)
T ss_dssp CCSEEEEESSTTSCHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHh
Confidence 3468999999999999999999843
No 495
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=88.09 E-value=0.3 Score=43.21 Aligned_cols=24 Identities=33% Similarity=0.447 Sum_probs=21.0
Q ss_pred CCcEEEEEecCCCChhHHHHHHHh
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVVE 78 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~~ 78 (359)
.+..|.|.|.||+|||+|..++.+
T Consensus 38 ~~~~vll~G~~GtGKT~la~~la~ 61 (262)
T 2qz4_A 38 VPKGALLLGPPGCGKTLLAKAVAT 61 (262)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHH
Confidence 345689999999999999999984
No 496
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=88.06 E-value=0.3 Score=44.78 Aligned_cols=25 Identities=28% Similarity=0.328 Sum_probs=21.8
Q ss_pred CCcEEEEEecCCCChhHHHHHHHhc
Q 018241 55 MSLRAGIVGLPNVGKSTLFNAVVEN 79 (359)
Q Consensus 55 ~~~~i~ivG~pn~GKSTL~n~L~~~ 79 (359)
.+..|.|.|.||+|||||.+++.+.
T Consensus 48 ~~~~vLL~Gp~GtGKT~la~ala~~ 72 (301)
T 3cf0_A 48 PSKGVLFYGPPGCGKTLLAKAIANE 72 (301)
T ss_dssp CCSEEEEECSSSSSHHHHHHHHHHH
T ss_pred CCceEEEECCCCcCHHHHHHHHHHH
Confidence 4457999999999999999999943
No 497
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=88.02 E-value=0.26 Score=46.24 Aligned_cols=22 Identities=32% Similarity=0.527 Sum_probs=20.2
Q ss_pred EEEEEecCCCChhHHHHHHHhc
Q 018241 58 RAGIVGLPNVGKSTLFNAVVEN 79 (359)
Q Consensus 58 ~i~ivG~pn~GKSTL~n~L~~~ 79 (359)
.+.|.|.||+|||||++++.+.
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~ 67 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWEL 67 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 7999999999999999999843
No 498
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=87.87 E-value=2.4 Score=37.55 Aligned_cols=33 Identities=6% Similarity=0.012 Sum_probs=23.9
Q ss_pred CceEEEEecCCCcCCCCcCcchhhhHhhHHHhcccceEEeec
Q 018241 120 PASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRC 161 (359)
Q Consensus 120 ~~~i~lvDtpG~~~~~~~~~~~~~~~l~~i~~aD~il~Vvd~ 161 (359)
...++++|||+... ......+..||.+++|+..
T Consensus 144 ~yD~viiD~pp~~~---------~~~~~~l~~aD~vivv~~~ 176 (267)
T 3k9g_A 144 KYDYIVIDTNPSLD---------VTLKNALLCSDYVIIPMTA 176 (267)
T ss_dssp TCSEEEEEECSSCS---------HHHHHHHTTCSEEEEEEES
T ss_pred CCCEEEEECcCCcc---------HHHHHHHHHCCeEEEEeCC
Confidence 35689999998541 1345566779999999886
No 499
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=87.85 E-value=0.31 Score=42.35 Aligned_cols=22 Identities=32% Similarity=0.318 Sum_probs=19.4
Q ss_pred CcEEEEEecCCCChhHHHHHHH
Q 018241 56 SLRAGIVGLPNVGKSTLFNAVV 77 (359)
Q Consensus 56 ~~~i~ivG~pn~GKSTL~n~L~ 77 (359)
+.=|+|=|..||||||+++.|.
T Consensus 2 ~kFI~~EG~dGsGKsTq~~~L~ 23 (205)
T 4hlc_A 2 SAFITFEGPEGSGKTTVINEVY 23 (205)
T ss_dssp CEEEEEECCTTSCHHHHHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHH
Confidence 3458888999999999999998
No 500
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=87.75 E-value=0.26 Score=45.93 Aligned_cols=24 Identities=21% Similarity=0.267 Sum_probs=21.5
Q ss_pred CcEEEEEecCCCChhHHHHHHHhc
Q 018241 56 SLRAGIVGLPNVGKSTLFNAVVEN 79 (359)
Q Consensus 56 ~~~i~ivG~pn~GKSTL~n~L~~~ 79 (359)
+.-|+|+|.+|+||||+.++|.+.
T Consensus 144 g~~vl~~G~sG~GKSt~a~~l~~~ 167 (314)
T 1ko7_A 144 GVGVLITGDSGIGKSETALELIKR 167 (314)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHT
T ss_pred CEEEEEEeCCCCCHHHHHHHHHhc
Confidence 467999999999999999999954
Done!