BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 018242
(359 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2FP8|A Chain A, Structure Of Strictosidine Synthase, The Biosynthetic
Entry To The Monoterpenoid Indole Alkaloid Family
pdb|2FP8|B Chain B, Structure Of Strictosidine Synthase, The Biosynthetic
Entry To The Monoterpenoid Indole Alkaloid Family
pdb|2FP9|A Chain A, Crystal Structure Of Native Strictosidine Synthase
pdb|2FP9|B Chain B, Crystal Structure Of Native Strictosidine Synthase
pdb|2FPC|A Chain A, Structure Of Strictosidine Synthase, The Biosynthetic
Entry To The Monoterpenoid Indole Alkaloid Family
pdb|2FPC|B Chain B, Structure Of Strictosidine Synthase, The Biosynthetic
Entry To The Monoterpenoid Indole Alkaloid Family
pdb|2VAQ|A Chain A, Structure Of Strictosidine Synthase In Complex With
Inhibitor
pdb|2VAQ|B Chain B, Structure Of Strictosidine Synthase In Complex With
Inhibitor
pdb|3V1S|A Chain A, Scaffold Tailoring By A Newly Detected Pictet-Spenglerase
Ac-Tivity Of Strictosidine Synthase (Str1): From The
Common Tryp-Toline Skeleton To The Rare
Piperazino-Indole Framework
pdb|3V1S|B Chain B, Scaffold Tailoring By A Newly Detected Pictet-Spenglerase
Ac-Tivity Of Strictosidine Synthase (Str1): From The
Common Tryp-Toline Skeleton To The Rare
Piperazino-Indole Framework
Length = 322
Score = 200 bits (508), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 114/322 (35%), Positives = 172/322 (53%), Gaps = 45/322 (13%)
Query: 33 AIGPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSP--NRDGCEGAYEYDHAA 90
+ P S FD+ +G YT V DGR+IK+ ++ FA SP N+ CE + + A
Sbjct: 18 SYAPNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTD---AE 74
Query: 91 KEHICGRPLGLCFNKTNGDLYIADAYFGLLKVGPEGGLATAVATQSEGIPFRFCNSLDID 150
K +CGR + +N N LYI D Y+ L VG EGG AT +AT +G+PF++ ++ +D
Sbjct: 75 KRPLCGRTYDISYNLQNNQLYIVDCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVD 134
Query: 151 QSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQVTVLLGNLSFPNGVALSE 210
Q TGI+YFTD S+ + R ++ + DKTGRL+KYDP+TK+ T+LL L P G +S
Sbjct: 135 QRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETTLLLKELHVPGGAEVSA 194
Query: 211 DGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGGFWVGIHSRRKGI 270
D +++L+AE S +I++YWL+ K GT E++ ++P P NIKR+ G FWV
Sbjct: 195 DSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRNADGHFWV--------- 244
Query: 271 SKLVLSFPWIGNVLIKLPIDIVKIHSSLVKLSGN-----GGMAMRISEQGNVLEILEEIG 325
SS +L GN ++ E GN+LE++
Sbjct: 245 -------------------------SSSEELDGNMHGRVDPKGIKFDEFGNILEVIPLPP 279
Query: 326 RKMWRSISEVEEKDGNLWIGSV 347
+++E DG L+IG++
Sbjct: 280 PFAGEHFEQIQEHDGLLYIGTL 301
>pdb|2V91|A Chain A, Structure Of Strictosidine Synthase In Complex With
Strictosidine
pdb|2V91|B Chain B, Structure Of Strictosidine Synthase In Complex With
Strictosidine
Length = 302
Score = 200 bits (508), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 114/322 (35%), Positives = 172/322 (53%), Gaps = 45/322 (13%)
Query: 33 AIGPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSP--NRDGCEGAYEYDHAA 90
+ P S FD+ +G YT V DGR+IK+ ++ FA SP N+ CE + + A
Sbjct: 9 SYAPNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTD---AE 65
Query: 91 KEHICGRPLGLCFNKTNGDLYIADAYFGLLKVGPEGGLATAVATQSEGIPFRFCNSLDID 150
K +CGR + +N N LYI D Y+ L VG EGG AT +AT +G+PF++ ++ +D
Sbjct: 66 KRPLCGRTYDISYNLQNNQLYIVDCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVD 125
Query: 151 QSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQVTVLLGNLSFPNGVALSE 210
Q TGI+YFTD S+ + R ++ + DKTGRL+KYDP+TK+ T+LL L P G +S
Sbjct: 126 QRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETTLLLKELHVPGGAEVSA 185
Query: 211 DGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGGFWVGIHSRRKGI 270
D +++L+AE S +I++YWL+ K GT E++ ++P P NIKR+ G FWV
Sbjct: 186 DSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRNADGHFWV--------- 235
Query: 271 SKLVLSFPWIGNVLIKLPIDIVKIHSSLVKLSGN-----GGMAMRISEQGNVLEILEEIG 325
SS +L GN ++ E GN+LE++
Sbjct: 236 -------------------------SSSEELDGNMHGRVDPKGIKFDEFGNILEVIPLPP 270
Query: 326 RKMWRSISEVEEKDGNLWIGSV 347
+++E DG L+IG++
Sbjct: 271 PFAGEHFEQIQEHDGLLYIGTL 292
>pdb|2FPB|A Chain A, Structure Of Strictosidine Synthase, The Biosynthetic
Entry To The Monoterpenoid Indole Alkaloid Family
pdb|2FPB|B Chain B, Structure Of Strictosidine Synthase, The Biosynthetic
Entry To The Monoterpenoid Indole Alkaloid Family
Length = 322
Score = 192 bits (487), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 111/322 (34%), Positives = 167/322 (51%), Gaps = 45/322 (13%)
Query: 33 AIGPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSP--NRDGCEGAYEYDHAA 90
+ P S FD+ +G YT V DGR+ K+ ++ FA SP N+ CE + + A
Sbjct: 18 SYAPNSFTFDSTNKGFYTSVQDGRVXKYEGPNSGFVDFAYASPYWNKAFCENSTD---AE 74
Query: 91 KEHICGRPLGLCFNKTNGDLYIADAYFGLLKVGPEGGLATAVATQSEGIPFRFCNSLDID 150
K +CGR + +N N YI D Y+ L VG EGG AT +AT +G+PF++ ++ +D
Sbjct: 75 KRPLCGRTYDISYNLQNNQXYIVDCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVD 134
Query: 151 QSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQVTVLLGNLSFPNGVALSE 210
Q TGI+YFTD S+ + R + + DKTGRL KYDP+TK+ T+L L P G +S
Sbjct: 135 QRTGIVYFTDVSTLYDDRGVQQIXDTSDKTGRLXKYDPSTKETTLLXKELHVPGGAEVSA 194
Query: 211 DGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGGFWVGIHSRRKGI 270
D +++L+AE S +I++YWL+ K GT E++ ++P P NIKR+ G FWV
Sbjct: 195 DSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRNADGHFWV--------- 244
Query: 271 SKLVLSFPWIGNVLIKLPIDIVKIHSSLVKLSGN-----GGMAMRISEQGNVLEILEEIG 325
SS +L GN ++ E GN+LE++
Sbjct: 245 -------------------------SSSEELDGNXHGRVDPKGIKFDEFGNILEVIPLPP 279
Query: 326 RKMWRSISEVEEKDGNLWIGSV 347
+++E DG L+IG++
Sbjct: 280 PFAGEHFEQIQEHDGLLYIGTL 301
>pdb|3LI3|A Chain A, Diisopropyl Fluorophosphatase (Dfpase), D121e Mutant
Length = 314
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/156 (23%), Positives = 68/156 (43%), Gaps = 9/156 (5%)
Query: 96 GRPLGLCFNKTNGDLYIADAYFGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGI 155
G P G ++ L++AD GLL V +G SEG + CN D G
Sbjct: 71 GIPAGCQCDRDANQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNECAFDYE-GN 129
Query: 156 IYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQVTVLLGNLSFPNGVALSE--DGN 213
++ T + + ++ + +K G + + + + V FPNG+A+ DG
Sbjct: 130 LWITAPAGEVAPADYTRSMQ--EKFGSIYCFTTDGQMIQVDTA-FQFPNGIAVRHMNDGR 186
Query: 214 --YILLAETTSCRILRYWLK-TSKAGTIEIVAQLPG 246
+++AET + ++ Y +K +K ++ +PG
Sbjct: 187 PYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPG 222
>pdb|2IAO|A Chain A, Crystal Structure Of Squid Ganglion Dfpase E37q Mutant
Length = 312
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/156 (23%), Positives = 68/156 (43%), Gaps = 9/156 (5%)
Query: 96 GRPLGLCFNKTNGDLYIADAYFGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGI 155
G P G ++ L++AD GLL V +G SEG + CN D G
Sbjct: 69 GIPAGCQCDRDANQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYE-GN 127
Query: 156 IYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQVTVLLGNLSFPNGVALSE--DGN 213
++ T + + ++ + +K G + + + + V FPNG+A+ DG
Sbjct: 128 LWITAPAGEVAPADYTRSMQ--EKFGSIYCFTTDGQMIQVDTA-FQFPNGIAVRHMNDGR 184
Query: 214 --YILLAETTSCRILRYWLK-TSKAGTIEIVAQLPG 246
+++AET + ++ Y +K +K ++ +PG
Sbjct: 185 PYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPG 220
>pdb|2IAP|A Chain A, Crystal Structure Of Squid Ganglion Dfpase E21q Mutant
Length = 312
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/156 (23%), Positives = 68/156 (43%), Gaps = 9/156 (5%)
Query: 96 GRPLGLCFNKTNGDLYIADAYFGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGI 155
G P G ++ L++AD GLL V +G SEG + CN D G
Sbjct: 69 GIPAGCQCDRDANQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYE-GN 127
Query: 156 IYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQVTVLLGNLSFPNGVALSE--DGN 213
++ T + + ++ + +K G + + + + V FPNG+A+ DG
Sbjct: 128 LWITAPAGEVAPADYTRSMQ--EKFGSIYCFTTDGQMIQVDTA-FQFPNGIAVRHMNDGR 184
Query: 214 --YILLAETTSCRILRYWLK-TSKAGTIEIVAQLPG 246
+++AET + ++ Y +K +K ++ +PG
Sbjct: 185 PYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPG 220
>pdb|2IAX|A Chain A, Crystal Structure Of Squid Ganglion Dfpase D232s Mutant
Length = 312
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/156 (23%), Positives = 68/156 (43%), Gaps = 9/156 (5%)
Query: 96 GRPLGLCFNKTNGDLYIADAYFGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGI 155
G P G ++ L++AD GLL V +G SEG + CN D G
Sbjct: 69 GIPAGCQCDRDANQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYE-GN 127
Query: 156 IYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQVTVLLGNLSFPNGVALSE--DGN 213
++ T + + ++ + +K G + + + + V FPNG+A+ DG
Sbjct: 128 LWITAPAGEVAPADYTRSMQ--EKFGSIYCFTTDGQMIQVDTA-FQFPNGIAVRHMNDGR 184
Query: 214 --YILLAETTSCRILRYWLK-TSKAGTIEIVAQLPG 246
+++AET + ++ Y +K +K ++ +PG
Sbjct: 185 PYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPG 220
>pdb|1E1A|A Chain A, Crystal Structure Of Dfpase From Loligo Vulgaris
pdb|1PJX|A Chain A, 0.85 Angstrom Structure Of Squid Ganglion Dfpase
pdb|2GVV|A Chain A, Structure Of Diisopropyl Fluorophosphatase (Dfpase) In
Complex With Dicyclopentylphosphoroamidate (Dcppa)
pdb|2GVW|A Chain A, Structure Of Diisopropyl Fluorophosphatase (Dfpase)
Holoenzyme (Rt)
pdb|3BYC|A Chain A, Joint Neutron And X-Ray Structure Of Diisopropyl
Fluorophosphatase. Deuterium Occupancies Are 1-Q, Where
Q Is Occupancy Of H
pdb|3KGG|A Chain A, X-Ray Structure Of Perdeuterated Diisopropyl
Fluorophosphata (Dfpase): Perdeuteration Of Proteins For
Neutron Diffractio
pdb|3O4P|A Chain A, Dfpase At 0.85 Angstrom Resolution (H Atoms Included)
Length = 314
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/156 (23%), Positives = 68/156 (43%), Gaps = 9/156 (5%)
Query: 96 GRPLGLCFNKTNGDLYIADAYFGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGI 155
G P G ++ L++AD GLL V +G SEG + CN D G
Sbjct: 71 GIPAGCQCDRDANQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYE-GN 129
Query: 156 IYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQVTVLLGNLSFPNGVALSE--DGN 213
++ T + + ++ + +K G + + + + V FPNG+A+ DG
Sbjct: 130 LWITAPAGEVAPADYTRSMQ--EKFGSIYCFTTDGQMIQVDTA-FQFPNGIAVRHMNDGR 186
Query: 214 --YILLAETTSCRILRYWLK-TSKAGTIEIVAQLPG 246
+++AET + ++ Y +K +K ++ +PG
Sbjct: 187 PYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPG 222
>pdb|2IAV|A Chain A, Crystal Structure Of Squid Ganglion Dfpase H287a Mutant
Length = 312
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/156 (23%), Positives = 68/156 (43%), Gaps = 9/156 (5%)
Query: 96 GRPLGLCFNKTNGDLYIADAYFGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGI 155
G P G ++ L++AD GLL V +G SEG + CN D G
Sbjct: 69 GIPAGCQCDRDANQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYE-GN 127
Query: 156 IYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQVTVLLGNLSFPNGVALSE--DGN 213
++ T + + ++ + +K G + + + + V FPNG+A+ DG
Sbjct: 128 LWITAPAGEVAPADYTRSMQ--EKFGSIYCFTTDGQMIQVDTA-FQFPNGIAVRHMNDGR 184
Query: 214 --YILLAETTSCRILRYWLK-TSKAGTIEIVAQLPG 246
+++AET + ++ Y +K +K ++ +PG
Sbjct: 185 PYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPG 220
>pdb|2IAQ|A Chain A, Crystal Structure Of Squid Ganglion Dfpase S271a Mutant
Length = 312
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/156 (23%), Positives = 68/156 (43%), Gaps = 9/156 (5%)
Query: 96 GRPLGLCFNKTNGDLYIADAYFGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGI 155
G P G ++ L++AD GLL V +G SEG + CN D G
Sbjct: 69 GIPAGCQCDRDANQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYE-GN 127
Query: 156 IYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQVTVLLGNLSFPNGVALSE--DGN 213
++ T + + ++ + +K G + + + + V FPNG+A+ DG
Sbjct: 128 LWITAPAGEVAPADYTRSMQ--EKFGSIYCFTTDGQMIQVDTA-FQFPNGIAVRHMNDGR 184
Query: 214 --YILLAETTSCRILRYWLK-TSKAGTIEIVAQLPG 246
+++AET + ++ Y +K +K ++ +PG
Sbjct: 185 PYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPG 220
>pdb|2IAR|A Chain A, Crystal Structure Of Squid Ganglion Dfpase W244h Mutant
Length = 312
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/156 (23%), Positives = 68/156 (43%), Gaps = 9/156 (5%)
Query: 96 GRPLGLCFNKTNGDLYIADAYFGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGI 155
G P G ++ L++AD GLL V +G SEG + CN D G
Sbjct: 69 GIPAGCQCDRDANQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYE-GN 127
Query: 156 IYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQVTVLLGNLSFPNGVALSE--DGN 213
++ T + + ++ + +K G + + + + V FPNG+A+ DG
Sbjct: 128 LWITAPAGEVAPADYTRSMQ--EKFGSIYCFTTDGQMIQVDTA-FQFPNGIAVRHMNDGR 184
Query: 214 --YILLAETTSCRILRYWLK-TSKAGTIEIVAQLPG 246
+++AET + ++ Y +K +K ++ +PG
Sbjct: 185 PYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPG 220
>pdb|2IAU|A Chain A, Crystal Structure Of Squid Ganglion Dfpase W244y Mutant
Length = 312
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/156 (23%), Positives = 68/156 (43%), Gaps = 9/156 (5%)
Query: 96 GRPLGLCFNKTNGDLYIADAYFGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGI 155
G P G ++ L++AD GLL V +G SEG + CN D G
Sbjct: 69 GIPAGCQCDRDANQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYE-GN 127
Query: 156 IYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQVTVLLGNLSFPNGVALSE--DGN 213
++ T + + ++ + +K G + + + + V FPNG+A+ DG
Sbjct: 128 LWITAPAGEVAPADYTRSMQ--EKFGSIYCFTTDGQMIQVDTA-FQFPNGIAVRHMNDGR 184
Query: 214 --YILLAETTSCRILRYWLK-TSKAGTIEIVAQLPG 246
+++AET + ++ Y +K +K ++ +PG
Sbjct: 185 PYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPG 220
>pdb|2IAT|A Chain A, Crystal Structure Of Squid Ganglion Dfpase W244l Mutant
Length = 312
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/156 (23%), Positives = 68/156 (43%), Gaps = 9/156 (5%)
Query: 96 GRPLGLCFNKTNGDLYIADAYFGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGI 155
G P G ++ L++AD GLL V +G SEG + CN D G
Sbjct: 69 GIPAGCQCDRDANQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYE-GN 127
Query: 156 IYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQVTVLLGNLSFPNGVALSE--DGN 213
++ T + + ++ + +K G + + + + V FPNG+A+ DG
Sbjct: 128 LWITAPAGEVAPADYTRSMQ--EKFGSIYCFTTDGQMIQVDTA-FQFPNGIAVRHMNDGR 184
Query: 214 --YILLAETTSCRILRYWLK-TSKAGTIEIVAQLPG 246
+++AET + ++ Y +K +K ++ +PG
Sbjct: 185 PYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPG 220
>pdb|2IAS|A Chain A, Crystal Structure Of Squid Ganglion Dfpase W244f Mutant
Length = 312
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/156 (23%), Positives = 68/156 (43%), Gaps = 9/156 (5%)
Query: 96 GRPLGLCFNKTNGDLYIADAYFGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGI 155
G P G ++ L++AD GLL V +G SEG + CN D G
Sbjct: 69 GIPAGCQCDRDANQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYE-GN 127
Query: 156 IYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQVTVLLGNLSFPNGVALSE--DGN 213
++ T + + ++ + +K G + + + + V FPNG+A+ DG
Sbjct: 128 LWITAPAGEVAPADYTRSMQ--EKFGSIYCFTTDGQMIQVDTA-FQFPNGIAVRHMNDGR 184
Query: 214 --YILLAETTSCRILRYWLK-TSKAGTIEIVAQLPG 246
+++AET + ++ Y +K +K ++ +PG
Sbjct: 185 PYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPG 220
>pdb|3HLI|A Chain A, Diisopropyl Fluorophosphatase (Dfpase), Active Site
Mutants
pdb|3HLI|B Chain B, Diisopropyl Fluorophosphatase (Dfpase), Active Site
Mutants
pdb|3HLI|C Chain C, Diisopropyl Fluorophosphatase (Dfpase), Active Site
Mutants
pdb|3HLI|D Chain D, Diisopropyl Fluorophosphatase (Dfpase), Active Site
Mutants
Length = 314
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 38/164 (23%), Positives = 66/164 (40%), Gaps = 25/164 (15%)
Query: 96 GRPLGLCFNKTNGDLYIADAYFGLLKVGPEGGLATAVATQSEGIPFRFCNSLDID----- 150
G P G ++ L++AD GLL V +G SEG + CN D
Sbjct: 71 GIPAGCQCDRDANQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNL 130
Query: 151 ---QSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQVTVLLGNLSFPNGVA 207
G + D+++ Q + I G++++ D A FPNG+A
Sbjct: 131 WITAPAGEVAPADATASMQEK--FGSIYCFTTDGQMIQVDTA----------FQFPNGIA 178
Query: 208 LSE--DGN--YILLAETTSCRILRYWLK-TSKAGTIEIVAQLPG 246
+ DG +++AE + ++ Y +K +K ++ +PG
Sbjct: 179 VRHMNDGRPYQLIVAEMPTKKLWSYDIKGPAKIENKKVWGHIPG 222
>pdb|3HLH|A Chain A, Diisopropyl Fluorophosphatase (Dfpase), Active Site
Mutants
pdb|3HLH|B Chain B, Diisopropyl Fluorophosphatase (Dfpase), Active Site
Mutants
pdb|3HLH|C Chain C, Diisopropyl Fluorophosphatase (Dfpase), Active Site
Mutants
pdb|3HLH|D Chain D, Diisopropyl Fluorophosphatase (Dfpase), Active Site
Mutants
Length = 314
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 38/164 (23%), Positives = 66/164 (40%), Gaps = 25/164 (15%)
Query: 96 GRPLGLCFNKTNGDLYIADAYFGLLKVGPEGGLATAVATQSEGIPFRFCNSLDID----- 150
G P G ++ L++AD GLL V +G SEG + CN D
Sbjct: 71 GIPAGCQCDRDANQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNL 130
Query: 151 ---QSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQVTVLLGNLSFPNGVA 207
G + D+++ Q + I G++++ D A FPNG+A
Sbjct: 131 WITAPAGEVAPADATASMQEK--FGSIYCFTTDGQMIQVDTA----------FQFPNGIA 178
Query: 208 LSE--DGN--YILLAETTSCRILRYWLK-TSKAGTIEIVAQLPG 246
+ DG +++AE + ++ Y +K +K ++ +PG
Sbjct: 179 VRHMNDGRPYQLIVAEMPTKKLWSYDIKGPAKIENKKVWGHIPG 222
>pdb|2GVX|A Chain A, Structure Of Diisopropyl Fluorophosphatase (Dfpase),
Mutant D229n N175D
Length = 314
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 36/156 (23%), Positives = 68/156 (43%), Gaps = 9/156 (5%)
Query: 96 GRPLGLCFNKTNGDLYIADAYFGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGI 155
G P G ++ L++AD GLL V +G SEG + CN D G
Sbjct: 71 GIPAGCQCDRDANQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYE-GN 129
Query: 156 IYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQVTVLLGNLSFPNGVALSE--DGN 213
++ T + + ++ + +K G + + + + V FP+G+A+ DG
Sbjct: 130 LWITAPAGEVAPADYTRSMQ--EKFGSIYCFTTDGQMIQVDTA-FQFPDGIAVRHMNDGR 186
Query: 214 --YILLAETTSCRILRYWLK-TSKAGTIEIVAQLPG 246
+++AET + ++ Y +K +K ++ +PG
Sbjct: 187 PYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPG 222
>pdb|2GVU|A Chain A, Crystal Structure Of Diisopropyl Fluorophosphatase
(Dfpase), Mutant D229n N120D
Length = 314
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 36/156 (23%), Positives = 68/156 (43%), Gaps = 9/156 (5%)
Query: 96 GRPLGLCFNKTNGDLYIADAYFGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGI 155
G P G ++ L++AD GLL V +G SEG + C+ D G
Sbjct: 71 GIPAGCQCDRDANQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCDDCAFDYE-GN 129
Query: 156 IYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQVTVLLGNLSFPNGVALSE--DGN 213
++ T + + ++ + +K G + + + + V FPNG+A+ DG
Sbjct: 130 LWITAPAGEVAPADYTRSMQ--EKFGSIYCFTTDGQMIQVDTA-FQFPNGIAVRHMNDGR 186
Query: 214 --YILLAETTSCRILRYWLK-TSKAGTIEIVAQLPG 246
+++AET + ++ Y +K +K ++ +PG
Sbjct: 187 PYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPG 222
>pdb|2IAW|A Chain A, Crystal Structure Of Squid Ganglion Dfpase N175d Mutant
Length = 312
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 36/156 (23%), Positives = 68/156 (43%), Gaps = 9/156 (5%)
Query: 96 GRPLGLCFNKTNGDLYIADAYFGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGI 155
G P G ++ L++AD GLL V +G SEG + CN D G
Sbjct: 69 GIPAGCQCDRDANQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYE-GN 127
Query: 156 IYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQVTVLLGNLSFPNGVALSE--DGN 213
++ T + + ++ + +K G + + + + V FP+G+A+ DG
Sbjct: 128 LWITAPAGEVAPADYTRSMQ--EKFGSIYCFTTDGQMIQVDTA-FQFPDGIAVRHMNDGR 184
Query: 214 --YILLAETTSCRILRYWLK-TSKAGTIEIVAQLPG 246
+++AET + ++ Y +K +K ++ +PG
Sbjct: 185 PYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPG 220
>pdb|2DSO|A Chain A, Crystal Structure Of D138n Mutant Of Drp35, A 35kda Drug
Responsive Protein From Staphylococcus Aureus
pdb|2DSO|B Chain B, Crystal Structure Of D138n Mutant Of Drp35, A 35kda Drug
Responsive Protein From Staphylococcus Aureus
pdb|2DSO|C Chain C, Crystal Structure Of D138n Mutant Of Drp35, A 35kda Drug
Responsive Protein From Staphylococcus Aureus
pdb|2DSO|D Chain D, Crystal Structure Of D138n Mutant Of Drp35, A 35kda Drug
Responsive Protein From Staphylococcus Aureus
pdb|2DSO|E Chain E, Crystal Structure Of D138n Mutant Of Drp35, A 35kda Drug
Responsive Protein From Staphylococcus Aureus
pdb|2DSO|F Chain F, Crystal Structure Of D138n Mutant Of Drp35, A 35kda Drug
Responsive Protein From Staphylococcus Aureus
Length = 333
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 37/155 (23%), Positives = 64/155 (41%), Gaps = 18/155 (11%)
Query: 137 EGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQVTVL 196
E + +C + + S G YFTD S + G + P + VT +
Sbjct: 129 EDLSTAYCINDMVFDSKGGFYFTDFRG-----------YSTNPLGGVYYVSPDFRTVTPI 177
Query: 197 LGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGF------PDN 250
+ N+S NG+ALS D + + ETT+ R+ R L+ A +P + PD+
Sbjct: 178 IQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDS 237
Query: 251 IKRSPRGGFWVGIHSRRKGISKLVLSFPWIGNVLI 285
+V ++ + + + +P IG +LI
Sbjct: 238 CCIDSDDNLYVAMYGQGRVLVFNKRGYP-IGQILI 271
>pdb|1V04|A Chain A, Serum Paraoxonase By Directed Evolution
pdb|3SRE|A Chain A, Serum Paraoxonase-1 By Directed Evolution At Ph 6.5
pdb|3SRG|A Chain A, Serum Paraoxonase-1 By Directed Evolution At Ph 6.5 In
Complex With 2- Hydroxyquinoline
Length = 355
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 34/80 (42%), Gaps = 3/80 (3%)
Query: 186 YDPATKQVTVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLP 245
Y P V V+ F NG+ +S DG Y+ +AE + +I Y + T V
Sbjct: 208 YSP--NDVRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLSFD 265
Query: 246 GFPDNIKRSP-RGGFWVGIH 264
DNI P G WVG H
Sbjct: 266 TLVDNISVDPVTGDLWVGCH 285
>pdb|2DG1|A Chain A, Crystal Structure Of Drp35, A 35kda Drug Responsive
Protein From Staphylococcus Aureus, Complexed With Ca2+
pdb|2DG1|B Chain B, Crystal Structure Of Drp35, A 35kda Drug Responsive
Protein From Staphylococcus Aureus, Complexed With Ca2+
pdb|2DG1|C Chain C, Crystal Structure Of Drp35, A 35kda Drug Responsive
Protein From Staphylococcus Aureus, Complexed With Ca2+
pdb|2DG1|D Chain D, Crystal Structure Of Drp35, A 35kda Drug Responsive
Protein From Staphylococcus Aureus, Complexed With Ca2+
pdb|2DG1|E Chain E, Crystal Structure Of Drp35, A 35kda Drug Responsive
Protein From Staphylococcus Aureus, Complexed With Ca2+
pdb|2DG1|F Chain F, Crystal Structure Of Drp35, A 35kda Drug Responsive
Protein From Staphylococcus Aureus, Complexed With Ca2+
Length = 333
Score = 37.7 bits (86), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 37/155 (23%), Positives = 63/155 (40%), Gaps = 18/155 (11%)
Query: 137 EGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQVTVL 196
E + +C + S G YFTD S + G + P + VT +
Sbjct: 129 EDLSTAYCIDDMVFDSKGGFYFTDFRG-----------YSTNPLGGVYYVSPDFRTVTPI 177
Query: 197 LGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGF------PDN 250
+ N+S NG+ALS D + + ETT+ R+ R L+ A +P + PD+
Sbjct: 178 IQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDS 237
Query: 251 IKRSPRGGFWVGIHSRRKGISKLVLSFPWIGNVLI 285
+V ++ + + + +P IG +LI
Sbjct: 238 CCIDSDDNLYVAMYGQGRVLVFNKRGYP-IGQILI 271
>pdb|2DG0|A Chain A, Crystal Structure Of Drp35, A 35kda Drug Responsive
Protein From Staphylococcus Aureus
pdb|2DG0|B Chain B, Crystal Structure Of Drp35, A 35kda Drug Responsive
Protein From Staphylococcus Aureus
pdb|2DG0|C Chain C, Crystal Structure Of Drp35, A 35kda Drug Responsive
Protein From Staphylococcus Aureus
pdb|2DG0|D Chain D, Crystal Structure Of Drp35, A 35kda Drug Responsive
Protein From Staphylococcus Aureus
pdb|2DG0|E Chain E, Crystal Structure Of Drp35, A 35kda Drug Responsive
Protein From Staphylococcus Aureus
pdb|2DG0|F Chain F, Crystal Structure Of Drp35, A 35kda Drug Responsive
Protein From Staphylococcus Aureus
pdb|2DG0|G Chain G, Crystal Structure Of Drp35, A 35kda Drug Responsive
Protein From Staphylococcus Aureus
pdb|2DG0|H Chain H, Crystal Structure Of Drp35, A 35kda Drug Responsive
Protein From Staphylococcus Aureus
pdb|2DG0|I Chain I, Crystal Structure Of Drp35, A 35kda Drug Responsive
Protein From Staphylococcus Aureus
pdb|2DG0|J Chain J, Crystal Structure Of Drp35, A 35kda Drug Responsive
Protein From Staphylococcus Aureus
pdb|2DG0|K Chain K, Crystal Structure Of Drp35, A 35kda Drug Responsive
Protein From Staphylococcus Aureus
pdb|2DG0|L Chain L, Crystal Structure Of Drp35, A 35kda Drug Responsive
Protein From Staphylococcus Aureus
Length = 333
Score = 37.4 bits (85), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 37/155 (23%), Positives = 62/155 (40%), Gaps = 18/155 (11%)
Query: 137 EGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQVTVL 196
E + +C + S G YFTD S + G + P + VT +
Sbjct: 129 EDLSTAYCIDDXVFDSKGGFYFTDFRG-----------YSTNPLGGVYYVSPDFRTVTPI 177
Query: 197 LGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGF------PDN 250
+ N+S NG+ALS D + + ETT+ R+ R L+ A +P + PD+
Sbjct: 178 IQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDS 237
Query: 251 IKRSPRGGFWVGIHSRRKGISKLVLSFPWIGNVLI 285
+V + + + + +P IG +LI
Sbjct: 238 CCIDSDDNLYVAXYGQGRVLVFNKRGYP-IGQILI 271
>pdb|3LI4|A Chain A, Diisopropyl Fluorophosphatase (Dfpase), N120d,N175d,D229n
Mutant
Length = 314
Score = 37.0 bits (84), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 35/156 (22%), Positives = 68/156 (43%), Gaps = 9/156 (5%)
Query: 96 GRPLGLCFNKTNGDLYIADAYFGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGI 155
G P G ++ L++AD GLL V +G SEG + C+ D G
Sbjct: 71 GIPAGCQCDRDANQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCDDCAFDYE-GN 129
Query: 156 IYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQVTVLLGNLSFPNGVALSE--DGN 213
++ T + + ++ + +K G + + + + V FP+G+A+ DG
Sbjct: 130 LWITAPAGEVAPADYTRSMQ--EKFGSIYCFTTDGQMIQVDTA-FQFPDGIAVRHMNDGR 186
Query: 214 --YILLAETTSCRILRYWLK-TSKAGTIEIVAQLPG 246
+++AET + ++ Y +K +K ++ +PG
Sbjct: 187 PYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPG 222
>pdb|3LI5|A Chain A, Diisopropyl Fluorophosphatase (Dfpase),
E21q,N120d,N175d,D229n Mutant
Length = 314
Score = 37.0 bits (84), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 35/156 (22%), Positives = 68/156 (43%), Gaps = 9/156 (5%)
Query: 96 GRPLGLCFNKTNGDLYIADAYFGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGI 155
G P G ++ L++AD GLL V +G SEG + C+ D G
Sbjct: 71 GIPAGCQCDRDANQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCDDCAFDYE-GN 129
Query: 156 IYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQVTVLLGNLSFPNGVALSE--DGN 213
++ T + + ++ + +K G + + + + V FP+G+A+ DG
Sbjct: 130 LWITAPAGEVAPADYTRSMQ--EKFGSIYCFTTDGQMIQVDTA-FQFPDGIAVRHMNDGR 186
Query: 214 --YILLAETTSCRILRYWLK-TSKAGTIEIVAQLPG 246
+++AET + ++ Y +K +K ++ +PG
Sbjct: 187 PYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPG 222
>pdb|4ELJ|A Chain A, Crystal Structure Of The Inactive Retinoblastoma Protein
Phosphorylated At T373
Length = 656
Score = 33.9 bits (76), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 40/85 (47%), Gaps = 4/85 (4%)
Query: 275 LSFPWIGNVLIKLPIDIVKIHSSLVKLSGNGGMAMRISEQGNVLEILEEIG----RKMWR 330
LSFPWI NVL D K+ S +K GN M + I+E + ++
Sbjct: 440 LSFPWILNVLNLKAFDFYKVIESFIKAEGNLTREMIKHLERCEHRIMESLAWLSDSPLFD 499
Query: 331 SISEVEEKDGNLWIGSVNMPYAGLY 355
I + ++++G L S+++ Y +Y
Sbjct: 500 LIKQSKDREGPLKSTSLSLFYKKVY 524
>pdb|4ELL|A Chain A, Structure Of The Inactive Retinoblastoma Protein Pocket
Domain
pdb|4ELL|B Chain B, Structure Of The Inactive Retinoblastoma Protein Pocket
Domain
Length = 411
Score = 32.0 bits (71), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 18/35 (51%)
Query: 275 LSFPWIGNVLIKLPIDIVKIHSSLVKLSGNGGMAM 309
LSFPWI NVL D K+ S +K GN M
Sbjct: 136 LSFPWILNVLNLKAFDFYKVIESFIKAEGNLTREM 170
>pdb|2R7G|A Chain A, Structure Of The Retinoblastoma Protein Pocket Domain In
Complex With Adenovirus E1a Cr1 Domain
pdb|2R7G|C Chain C, Structure Of The Retinoblastoma Protein Pocket Domain In
Complex With Adenovirus E1a Cr1 Domain
Length = 347
Score = 32.0 bits (71), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 18/35 (51%)
Query: 275 LSFPWIGNVLIKLPIDIVKIHSSLVKLSGNGGMAM 309
LSFPWI NVL D K+ S +K GN M
Sbjct: 133 LSFPWILNVLNLKAFDFYKVIESFIKAEGNLTREM 167
>pdb|1AD6|A Chain A, Domain A Of Human Retinoblastoma Tumor Suppressor
Length = 185
Score = 32.0 bits (71), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 17/30 (56%)
Query: 275 LSFPWIGNVLIKLPIDIVKIHSSLVKLSGN 304
LSFPWI NVL D K+ S +K GN
Sbjct: 135 LSFPWILNVLNLKAFDFYKVIESFIKAEGN 164
>pdb|1N4M|A Chain A, Structure Of Rb Tumor Suppressor Bound To The
Transactivation Domain Of E2f-2
pdb|1N4M|B Chain B, Structure Of Rb Tumor Suppressor Bound To The
Transactivation Domain Of E2f-2
Length = 345
Score = 32.0 bits (71), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 18/35 (51%)
Query: 275 LSFPWIGNVLIKLPIDIVKIHSSLVKLSGNGGMAM 309
LSFPWI NVL D K+ S +K GN M
Sbjct: 133 LSFPWILNVLNLKAFDFYKVIESFIKAEGNLTREM 167
>pdb|1GH6|B Chain B, Retinoblastoma Pocket Complexed With Sv40 Large T Antigen
Length = 333
Score = 32.0 bits (71), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 18/35 (51%)
Query: 275 LSFPWIGNVLIKLPIDIVKIHSSLVKLSGNGGMAM 309
LSFPWI NVL D K+ S +K GN M
Sbjct: 134 LSFPWILNVLNLKAFDFYKVIESFIKAEGNLTREM 168
>pdb|1GUX|A Chain A, Rb Pocket Bound To E7 Lxcxe Motif
pdb|1O9K|A Chain A, Crystal Structure Of The Retinoblastoma Tumour Suppressor
Protein Bound To E2f Peptide
pdb|1O9K|C Chain C, Crystal Structure Of The Retinoblastoma Tumour Suppressor
Protein Bound To E2f Peptide
pdb|1O9K|E Chain E, Crystal Structure Of The Retinoblastoma Tumour Suppressor
Protein Bound To E2f Peptide
pdb|1O9K|G Chain G, Crystal Structure Of The Retinoblastoma Tumour Suppressor
Protein Bound To E2f Peptide
Length = 218
Score = 31.6 bits (70), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 18/35 (51%)
Query: 275 LSFPWIGNVLIKLPIDIVKIHSSLVKLSGNGGMAM 309
LSFPWI NVL D K+ S +K GN M
Sbjct: 141 LSFPWILNVLNLKAFDFYKVIESFIKAEGNLTREM 175
>pdb|3POM|A Chain A, Crystal Structure Of The Unliganded Retinoblastoma Protein
Pocket Domain
pdb|3POM|B Chain B, Crystal Structure Of The Unliganded Retinoblastoma Protein
Pocket Domain
Length = 352
Score = 31.6 bits (70), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 18/35 (51%)
Query: 275 LSFPWIGNVLIKLPIDIVKIHSSLVKLSGNGGMAM 309
LSFPWI NVL D K+ S +K GN M
Sbjct: 136 LSFPWILNVLNLKAFDFYKVIESFIKAEGNLTREM 170
>pdb|3HRP|A Chain A, Crystal Structure Of Structural Genomics Protein Of
Unknown Function (np_812590.1) From Bacteroides
Thetaiotaomicron Vpi-5482 At 1.70 A Resolution
Length = 409
Score = 31.2 bits (69), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 34/125 (27%), Positives = 54/125 (43%), Gaps = 20/125 (16%)
Query: 155 IIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQVTVLLGN-----LSFPNGVALS 209
I YF DS+ +N +S + G + + Q TV G + PNG +
Sbjct: 273 IYYFVDSNFYXSDQN-LSSVYKITPDGECEWFCGSATQKTVQDGLREEALFAQPNGXTVD 331
Query: 210 EDGN-YILLAETTSC----RILRYWLKTSKAGTIEIVAQLPG--------FPDNIKRSPR 256
EDGN YI+ C IL ++ T AG +++ +Q+ G +P +I
Sbjct: 332 EDGNFYIVDGFKGYCLRKLDILDGYVSTV-AGQVDVASQIDGTPLEATFNYPYDICYDGE 390
Query: 257 GGFWV 261
GG+W+
Sbjct: 391 GGYWI 395
>pdb|1YHP|A Chain A, Solution Structure Of Ca2+-Free Ddcad-1
pdb|2B1O|A Chain A, Solution Structure Of Ca2+-Bound Ddcad-1
Length = 212
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 19/30 (63%)
Query: 184 MKYDPATKQVTVLLGNLSFPNGVALSEDGN 213
KY P T QVTV+ + +FP + +++D N
Sbjct: 172 FKYSPTTGQVTVIKKDETFPKNMTVTQDDN 201
>pdb|2IWF|A Chain A, Resting Form Of Pink Nitrous Oxide Reductase From
Achromobacter Cycloclastes
pdb|2IWF|B Chain B, Resting Form Of Pink Nitrous Oxide Reductase From
Achromobacter Cycloclastes
pdb|2IWK|A Chain A, Inhibitor-Bound Form Of Nitrous Oxide Reductase From
Achromobacter Cycloclastes At 1.7 Angstrom Resolution
pdb|2IWK|B Chain B, Inhibitor-Bound Form Of Nitrous Oxide Reductase From
Achromobacter Cycloclastes At 1.7 Angstrom Resolution
Length = 642
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 18/75 (24%), Positives = 34/75 (45%), Gaps = 1/75 (1%)
Query: 15 FLFINSSTQGVVQYQIEGAIGPESLAFDALGEGPYTGVSDGRIIKWHQDQR-RWLHFART 73
+ N+ + V + E +GP AFD G + D +++KW+ D+ R +
Sbjct: 359 LFYDNAEPRSAVVAEPELGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIDEAIRAYAGEKI 418
Query: 74 SPNRDGCEGAYEYDH 88
+P +D + Y+ H
Sbjct: 419 NPIKDKLDVQYQPGH 433
>pdb|1FWX|A Chain A, Crystal Structure Of Nitrous Oxide Reductase From P.
Denitrificans
pdb|1FWX|B Chain B, Crystal Structure Of Nitrous Oxide Reductase From P.
Denitrificans
pdb|1FWX|C Chain C, Crystal Structure Of Nitrous Oxide Reductase From P.
Denitrificans
pdb|1FWX|D Chain D, Crystal Structure Of Nitrous Oxide Reductase From P.
Denitrificans
Length = 595
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 27/116 (23%), Positives = 48/116 (41%), Gaps = 17/116 (14%)
Query: 16 LFINSSTQGVVQYQIEGAIGPESLAFDALGEGPYTGVSDGRIIKWH-QDQRRWLHFARTS 74
+ N+ + V + E +GP AFD G + D +++KW+ +D R +
Sbjct: 313 FYENADPRSAVVAEPELGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVD 372
Query: 75 PNRDGCEGAYEYDHAAKEHICGRPLG------LCFNKTNGDLYIADAYFGLLKVGP 124
P +D + Y+ H + + G L +C +K + D + L VGP
Sbjct: 373 PIKDKLDVHYQPGHL--KTVMGETLDATNDWLVCLSKFSKDRF--------LNVGP 418
>pdb|3U0S|A Chain A, Crystal Structure Of An Enzyme Redesigned Through
Multiplayer Online Gaming: Ce6
pdb|3U0S|B Chain B, Crystal Structure Of An Enzyme Redesigned Through
Multiplayer Online Gaming: Ce6
Length = 337
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 35/163 (21%), Positives = 63/163 (38%), Gaps = 23/163 (14%)
Query: 96 GRPLGLCFNKTNGDLYIADAYFGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGI 155
G P+G ++ L++AD GLL V +G SEG + C D G
Sbjct: 84 GSPIGCQCDRDANQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCAYCAFDYE-GN 142
Query: 156 IYFTDSSSQ-------FQRRNHISVILSGDKTGRLMKYDPATKQVTVLLGNLSFPNGVAL 208
++ T + + R I G++++ D A P G+A+
Sbjct: 143 LWITAPAGEVAPADFTISLREKFGSIYCFTTDGQMIQVDTA----------FQCPAGIAV 192
Query: 209 SE--DGN--YILLAETTSCRILRYWLK-TSKAGTIEIVAQLPG 246
DG +++AE + ++ Y +K +K ++ +PG
Sbjct: 193 RHMNDGRPYQLIVAEQPTKKLWSYDIKGPAKIENKKVWGHIPG 235
>pdb|2GHS|A Chain A, Crystal Structure Of A Calcium-binding Protein, Regucalcin
(agr_c_1268) From Agrobacterium Tumefaciens Str. C58 At
1.55 A Resolution
Length = 326
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 24/52 (46%)
Query: 179 KTGRLMKYDPATKQVTVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWL 230
+TG Y A +VT L ++S PN + S DG +T R+ R L
Sbjct: 157 ETGAGSIYHVAKGKVTKLFADISIPNSICFSPDGTTGYFVDTKVNRLXRVPL 208
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.138 0.419
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,132,193
Number of Sequences: 62578
Number of extensions: 484591
Number of successful extensions: 1157
Number of sequences better than 100.0: 40
Number of HSP's better than 100.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1113
Number of HSP's gapped (non-prelim): 41
length of query: 359
length of database: 14,973,337
effective HSP length: 100
effective length of query: 259
effective length of database: 8,715,537
effective search space: 2257324083
effective search space used: 2257324083
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)