Query 018242
Match_columns 359
No_of_seqs 172 out of 1986
Neff 9.9
Searched_HMMs 46136
Date Fri Mar 29 07:20:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018242.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018242hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1520 Predicted alkaloid syn 100.0 8.1E-37 1.8E-41 268.2 28.9 326 28-358 48-376 (376)
2 PF08450 SGL: SMP-30/Gluconola 100.0 1.9E-27 4.1E-32 208.7 24.9 229 36-304 2-237 (246)
3 COG3386 Gluconolactonase [Carb 99.9 6.8E-25 1.5E-29 194.9 27.4 243 27-304 18-267 (307)
4 COG4257 Vgb Streptogramin lyas 99.9 1.2E-20 2.7E-25 157.8 23.6 280 25-356 53-345 (353)
5 PLN02919 haloacid dehalogenase 99.8 1.5E-16 3.2E-21 164.0 34.3 276 30-358 564-888 (1057)
6 KOG4499 Ca2+-binding protein R 99.7 6.8E-16 1.5E-20 126.7 18.9 232 37-304 18-266 (310)
7 PF10282 Lactonase: Lactonase, 99.7 1.9E-14 4.2E-19 132.3 29.3 203 32-267 35-267 (345)
8 COG4257 Vgb Streptogramin lyas 99.7 3.5E-15 7.6E-20 125.4 21.7 223 22-295 92-320 (353)
9 PRK11028 6-phosphogluconolacto 99.7 4.4E-13 9.6E-18 122.8 30.7 195 34-267 35-250 (330)
10 PLN02919 haloacid dehalogenase 99.7 5E-14 1.1E-18 145.4 26.6 220 33-279 623-887 (1057)
11 COG2706 3-carboxymuconate cycl 99.6 9.7E-12 2.1E-16 108.7 30.4 252 31-322 37-319 (346)
12 PF08450 SGL: SMP-30/Gluconola 99.6 8.4E-13 1.8E-17 115.8 22.4 184 35-264 41-245 (246)
13 PF10282 Lactonase: Lactonase, 99.6 2.1E-12 4.6E-17 118.8 24.3 213 33-268 86-315 (345)
14 TIGR02604 Piru_Ver_Nterm putat 99.5 3.3E-11 7.1E-16 111.8 27.3 181 25-229 4-211 (367)
15 PF03088 Str_synth: Strictosid 99.5 1.3E-13 2.7E-18 98.6 7.1 87 145-232 1-88 (89)
16 PRK11028 6-phosphogluconolacto 99.5 4.7E-11 1E-15 109.4 25.1 198 34-267 80-296 (330)
17 TIGR03866 PQQ_ABC_repeats PQQ- 99.4 4.8E-09 1E-13 94.1 31.1 191 46-287 2-195 (300)
18 COG2706 3-carboxymuconate cycl 99.4 6.9E-10 1.5E-14 97.2 24.0 209 34-267 89-312 (346)
19 TIGR03866 PQQ_ABC_repeats PQQ- 99.3 2.2E-08 4.8E-13 89.7 29.7 190 34-266 31-228 (300)
20 PF02239 Cytochrom_D1: Cytochr 99.2 1.1E-08 2.3E-13 94.6 23.5 290 25-359 29-348 (369)
21 COG3391 Uncharacterized conser 99.2 5.9E-08 1.3E-12 90.4 28.6 193 34-266 31-228 (381)
22 COG3391 Uncharacterized conser 99.2 1E-08 2.2E-13 95.5 23.2 190 34-267 74-275 (381)
23 COG3386 Gluconolactonase [Carb 99.1 6.6E-09 1.4E-13 92.9 18.5 151 32-223 109-278 (307)
24 PF07995 GSDH: Glucose / Sorbo 99.1 2.1E-08 4.6E-13 91.5 21.1 172 33-224 1-204 (331)
25 KOG0291 WD40-repeat-containing 99.1 9E-08 2E-12 91.1 24.7 196 33-279 350-549 (893)
26 PF06977 SdiA-regulated: SdiA- 99.1 6.3E-08 1.4E-12 83.8 21.9 202 28-266 15-242 (248)
27 PF03022 MRJP: Major royal jel 99.1 1.6E-07 3.4E-12 83.7 24.1 151 98-266 3-206 (287)
28 TIGR02604 Piru_Ver_Nterm putat 99.0 8.1E-08 1.7E-12 89.2 21.8 211 27-266 65-341 (367)
29 TIGR02658 TTQ_MADH_Hv methylam 99.0 7.1E-07 1.5E-11 81.1 25.8 236 27-287 42-338 (352)
30 cd00200 WD40 WD40 domain, foun 99.0 7.5E-06 1.6E-10 71.7 31.1 203 34-287 10-215 (289)
31 KOG2055 WD40 repeat protein [G 99.0 4.2E-07 9E-12 82.1 22.5 267 35-357 215-511 (514)
32 TIGR02658 TTQ_MADH_Hv methylam 98.9 3.1E-06 6.8E-11 76.9 28.4 113 45-195 12-142 (352)
33 PF02239 Cytochrom_D1: Cytochr 98.9 2.2E-06 4.7E-11 79.4 27.9 196 45-289 5-212 (369)
34 COG3292 Predicted periplasmic 98.9 3.9E-08 8.3E-13 91.2 15.7 146 36-230 167-316 (671)
35 PRK04792 tolB translocation pr 98.9 1.8E-06 3.9E-11 82.4 26.7 183 38-265 222-413 (448)
36 cd00200 WD40 WD40 domain, foun 98.9 2.6E-06 5.6E-11 74.7 26.2 185 37-267 55-241 (289)
37 TIGR03606 non_repeat_PQQ dehyd 98.9 3.5E-07 7.5E-12 85.6 21.0 179 28-222 24-250 (454)
38 PRK02889 tolB translocation pr 98.9 2.7E-06 5.8E-11 80.8 27.0 183 38-265 200-391 (427)
39 KOG0279 G protein beta subunit 98.9 1.7E-06 3.7E-11 73.6 22.3 186 35-265 65-252 (315)
40 PRK04922 tolB translocation pr 98.8 3.4E-06 7.3E-11 80.3 26.3 182 38-264 208-398 (433)
41 COG3292 Predicted periplasmic 98.8 6E-08 1.3E-12 90.0 13.2 139 98-266 167-310 (671)
42 KOG1446 Histone H3 (Lys4) meth 98.8 2.3E-05 5E-10 67.8 28.0 207 33-289 14-227 (311)
43 PF03022 MRJP: Major royal jel 98.8 1.7E-06 3.6E-11 77.2 22.0 197 36-265 3-255 (287)
44 PRK03629 tolB translocation pr 98.8 4.6E-06 1E-10 79.1 25.6 180 37-261 202-389 (429)
45 PF05096 Glu_cyclase_2: Glutam 98.8 8.2E-07 1.8E-11 76.5 18.4 207 1-230 1-260 (264)
46 PRK05137 tolB translocation pr 98.8 1.4E-05 2.9E-10 76.2 28.6 143 98-263 204-352 (435)
47 PRK05137 tolB translocation pr 98.8 4.4E-06 9.6E-11 79.5 24.7 183 37-264 205-396 (435)
48 PRK00178 tolB translocation pr 98.8 1.1E-05 2.4E-10 76.7 27.5 184 37-265 202-394 (430)
49 KOG1214 Nidogen and related ba 98.7 2.4E-07 5.3E-12 89.0 14.6 169 22-233 1056-1228(1289)
50 KOG0315 G-protein beta subunit 98.7 1.3E-05 2.8E-10 67.3 22.9 179 47-268 12-190 (311)
51 PRK02888 nitrous-oxide reducta 98.7 1.3E-06 2.8E-11 83.7 19.2 169 95-296 234-431 (635)
52 KOG4659 Uncharacterized conser 98.7 7.3E-06 1.6E-10 82.6 24.5 207 32-268 405-684 (1899)
53 PRK04043 tolB translocation pr 98.7 3.2E-05 7E-10 72.9 28.0 181 38-265 192-388 (419)
54 KOG0315 G-protein beta subunit 98.7 1.6E-05 3.4E-10 66.8 22.0 186 37-267 87-280 (311)
55 TIGR02800 propeller_TolB tol-p 98.7 1.2E-05 2.6E-10 76.1 24.5 184 38-266 194-386 (417)
56 COG3204 Uncharacterized protei 98.7 1.3E-05 2.8E-10 69.3 21.0 195 35-267 87-305 (316)
57 PRK03629 tolB translocation pr 98.7 7.3E-05 1.6E-09 71.0 28.8 141 98-261 201-346 (429)
58 PRK01742 tolB translocation pr 98.6 2.3E-05 4.9E-10 74.5 25.0 178 37-264 207-390 (429)
59 KOG1214 Nidogen and related ba 98.6 1.2E-06 2.7E-11 84.3 15.5 192 34-268 1025-1219(1289)
60 PF07433 DUF1513: Protein of u 98.6 2.3E-05 5E-10 69.1 21.5 181 22-233 38-249 (305)
61 KOG0318 WD40 repeat stress pro 98.6 0.00036 7.9E-09 64.6 29.7 195 35-267 192-427 (603)
62 TIGR03300 assembly_YfgL outer 98.6 0.00019 4.2E-09 67.0 29.3 253 45-358 65-338 (377)
63 PRK04792 tolB translocation pr 98.6 0.00013 2.7E-09 69.8 28.1 143 99-264 221-369 (448)
64 PF06977 SdiA-regulated: SdiA- 98.6 1.7E-05 3.7E-10 68.7 20.1 171 22-228 53-247 (248)
65 PRK04922 tolB translocation pr 98.6 7.6E-05 1.6E-09 71.1 25.9 142 99-263 207-354 (433)
66 KOG4659 Uncharacterized conser 98.5 3.2E-05 7E-10 78.2 23.3 190 32-268 363-615 (1899)
67 PTZ00421 coronin; Provisional 98.5 0.00021 4.6E-09 68.7 28.3 195 37-267 79-282 (493)
68 PRK11138 outer membrane biogen 98.5 0.00038 8.1E-09 65.5 28.6 262 44-358 69-353 (394)
69 KOG0293 WD40 repeat-containing 98.5 5.1E-06 1.1E-10 74.3 14.3 154 37-233 273-427 (519)
70 PRK00178 tolB translocation pr 98.5 0.00031 6.6E-09 66.9 27.7 142 99-263 202-349 (430)
71 PRK02889 tolB translocation pr 98.5 0.00026 5.7E-09 67.2 26.7 139 99-260 199-342 (427)
72 KOG0318 WD40 repeat stress pro 98.5 0.00045 9.8E-09 64.0 26.5 197 26-268 313-510 (603)
73 KOG0271 Notchless-like WD40 re 98.5 5.6E-05 1.2E-09 67.2 19.9 217 38-304 162-422 (480)
74 KOG0279 G protein beta subunit 98.4 0.00039 8.4E-09 59.5 24.0 179 46-264 29-211 (315)
75 KOG0286 G-protein beta subunit 98.4 0.0008 1.7E-08 58.0 26.2 196 27-268 49-252 (343)
76 KOG1446 Histone H3 (Lys4) meth 98.4 7.4E-05 1.6E-09 64.8 19.8 168 22-233 89-264 (311)
77 KOG0266 WD40 repeat-containing 98.4 0.00017 3.6E-09 69.1 24.7 158 33-233 203-366 (456)
78 KOG0286 G-protein beta subunit 98.4 0.00021 4.6E-09 61.5 22.2 193 34-266 96-294 (343)
79 KOG0266 WD40 repeat-containing 98.4 0.00033 7.1E-09 67.1 26.2 189 35-266 161-355 (456)
80 KOG0291 WD40-repeat-containing 98.4 4.9E-05 1.1E-09 73.0 19.5 206 34-289 393-622 (893)
81 KOG1407 WD40 repeat protein [F 98.4 0.00033 7.2E-09 59.4 22.1 184 33-263 20-207 (313)
82 KOG0282 mRNA splicing factor [ 98.4 7.5E-06 1.6E-10 74.6 13.2 214 27-289 252-472 (503)
83 PF07995 GSDH: Glucose / Sorbo 98.4 5.9E-06 1.3E-10 75.5 12.9 166 96-267 114-327 (331)
84 PLN00181 protein SPA1-RELATED; 98.4 0.0013 2.8E-08 67.7 31.4 162 36-233 486-650 (793)
85 PF01731 Arylesterase: Arylest 98.4 2.4E-06 5.2E-11 60.8 7.7 81 146-231 2-84 (86)
86 TIGR02800 propeller_TolB tol-p 98.4 0.0008 1.7E-08 63.7 27.5 143 99-264 193-341 (417)
87 KOG2106 Uncharacterized conser 98.3 0.00032 6.9E-09 64.7 22.7 216 35-320 248-464 (626)
88 PRK01029 tolB translocation pr 98.3 0.00088 1.9E-08 63.6 27.0 183 38-263 189-389 (428)
89 PF07433 DUF1513: Protein of u 98.3 0.0019 4.1E-08 57.2 26.4 108 96-219 5-117 (305)
90 PRK01742 tolB translocation pr 98.3 0.00064 1.4E-08 64.7 25.5 138 98-261 206-348 (429)
91 KOG2055 WD40 repeat protein [G 98.3 8.2E-05 1.8E-09 67.6 17.6 209 38-290 262-478 (514)
92 PRK11138 outer membrane biogen 98.3 0.00055 1.2E-08 64.3 24.4 213 107-358 160-394 (394)
93 COG4946 Uncharacterized protei 98.3 0.00024 5.2E-09 65.0 20.5 177 42-258 275-456 (668)
94 KOG0316 Conserved WD40 repeat- 98.3 0.00057 1.2E-08 57.2 20.9 197 37-289 21-223 (307)
95 KOG0293 WD40 repeat-containing 98.3 0.00024 5.2E-09 63.9 19.5 189 34-267 225-417 (519)
96 KOG0271 Notchless-like WD40 re 98.2 0.00059 1.3E-08 60.9 21.1 152 38-233 120-278 (480)
97 PRK02888 nitrous-oxide reducta 98.2 0.00013 2.8E-09 70.3 18.5 157 25-232 228-405 (635)
98 KOG1520 Predicted alkaloid syn 98.2 1.4E-05 3E-10 71.8 11.2 142 34-219 115-282 (376)
99 PRK04043 tolB translocation pr 98.2 0.0045 9.8E-08 58.5 28.8 137 100-261 192-334 (419)
100 TIGR03300 assembly_YfgL outer 98.2 0.0019 4.2E-08 60.3 25.6 247 45-355 105-376 (377)
101 PTZ00420 coronin; Provisional 98.2 0.0016 3.5E-08 63.4 24.8 195 35-268 76-286 (568)
102 KOG2048 WD40 repeat protein [G 98.2 0.00029 6.3E-09 67.0 18.8 175 23-232 372-549 (691)
103 COG3204 Uncharacterized protei 98.2 0.00034 7.3E-09 60.7 17.7 178 22-230 117-311 (316)
104 KOG1407 WD40 repeat protein [F 98.1 0.0012 2.7E-08 56.1 20.3 204 35-290 66-272 (313)
105 KOG0272 U4/U6 small nuclear ri 98.1 0.00023 5E-09 64.1 16.9 181 35-264 219-407 (459)
106 TIGR03606 non_repeat_PQQ dehyd 98.1 0.00041 8.9E-09 65.3 19.4 164 93-267 27-251 (454)
107 KOG0278 Serine/threonine kinas 98.1 0.00019 4.1E-09 60.5 15.0 185 38-268 105-290 (334)
108 KOG4499 Ca2+-binding protein R 98.1 0.00015 3.2E-09 60.7 14.2 146 34-220 109-274 (310)
109 COG4946 Uncharacterized protei 98.1 0.0003 6.5E-09 64.4 17.2 136 47-221 373-509 (668)
110 PLN00181 protein SPA1-RELATED; 98.1 0.0064 1.4E-07 62.6 28.8 186 37-267 536-730 (793)
111 TIGR03118 PEPCTERM_chp_1 conse 98.1 0.0064 1.4E-07 53.3 24.2 233 91-359 18-280 (336)
112 PRK01029 tolB translocation pr 98.0 0.013 2.9E-07 55.6 28.5 142 101-263 190-345 (428)
113 KOG0275 Conserved WD40 repeat- 98.0 0.0001 2.2E-09 64.2 12.0 42 27-68 207-248 (508)
114 PF13360 PQQ_2: PQQ-like domai 98.0 0.0034 7.4E-08 54.3 22.1 192 23-263 14-219 (238)
115 PF13360 PQQ_2: PQQ-like domai 98.0 0.0076 1.7E-07 52.1 24.6 102 107-233 36-142 (238)
116 cd00216 PQQ_DH Dehydrogenases 98.0 0.015 3.2E-07 56.4 28.1 169 45-233 111-321 (488)
117 KOG0272 U4/U6 small nuclear ri 98.0 0.0017 3.8E-08 58.6 19.5 214 34-299 175-395 (459)
118 KOG1273 WD40 repeat protein [G 98.0 0.0031 6.6E-08 55.1 20.2 187 37-264 69-268 (405)
119 KOG0263 Transcription initiati 98.0 0.00035 7.7E-09 67.5 15.9 186 35-268 452-642 (707)
120 KOG1274 WD40 repeat protein [G 98.0 0.0091 2E-07 59.2 25.3 155 35-233 15-170 (933)
121 KOG0296 Angio-associated migra 98.0 0.012 2.6E-07 52.4 27.8 152 38-233 69-222 (399)
122 PF08662 eIF2A: Eukaryotic tra 98.0 0.0029 6.2E-08 53.2 19.5 112 98-232 62-180 (194)
123 KOG2096 WD40 repeat protein [G 97.9 0.0092 2E-07 52.3 22.4 159 37-230 90-257 (420)
124 COG2133 Glucose/sorbosone dehy 97.9 0.017 3.8E-07 53.3 28.4 185 32-225 65-263 (399)
125 KOG0278 Serine/threonine kinas 97.9 0.0015 3.2E-08 55.3 16.7 139 48-233 158-299 (334)
126 KOG0772 Uncharacterized conser 97.9 0.0086 1.9E-07 55.7 22.6 195 36-267 170-386 (641)
127 KOG0285 Pleiotropic regulator 97.9 0.0097 2.1E-07 53.0 21.4 202 35-289 153-358 (460)
128 PF05096 Glu_cyclase_2: Glutam 97.9 0.007 1.5E-07 52.5 20.4 156 142-359 45-204 (264)
129 PTZ00421 coronin; Provisional 97.8 0.0053 1.1E-07 59.2 21.4 160 36-233 128-292 (493)
130 KOG0310 Conserved WD40 repeat- 97.8 0.0045 9.7E-08 57.0 19.3 221 34-304 27-251 (487)
131 PF03088 Str_synth: Strictosid 97.8 0.00022 4.8E-09 51.1 8.8 58 100-162 2-77 (89)
132 KOG0282 mRNA splicing factor [ 97.8 0.00066 1.4E-08 62.2 13.7 187 35-267 216-407 (503)
133 KOG1539 WD repeat protein [Gen 97.8 0.0017 3.7E-08 63.4 17.0 190 34-269 449-641 (910)
134 cd00216 PQQ_DH Dehydrogenases 97.8 0.04 8.8E-07 53.3 26.8 128 44-196 61-190 (488)
135 PTZ00420 coronin; Provisional 97.8 0.049 1.1E-06 53.3 27.2 120 95-233 74-199 (568)
136 KOG0310 Conserved WD40 repeat- 97.8 0.0068 1.5E-07 55.8 19.4 205 35-290 70-279 (487)
137 KOG0289 mRNA splicing factor [ 97.7 0.034 7.4E-07 50.8 23.7 143 97-263 305-450 (506)
138 KOG2048 WD40 repeat protein [G 97.7 0.059 1.3E-06 51.9 26.9 193 27-264 63-265 (691)
139 TIGR03032 conserved hypothetic 97.6 0.04 8.6E-07 48.9 23.9 214 27-265 42-261 (335)
140 KOG2106 Uncharacterized conser 97.6 0.013 2.9E-07 54.3 19.4 189 27-266 322-512 (626)
141 PF08662 eIF2A: Eukaryotic tra 97.6 0.0072 1.5E-07 50.8 16.8 120 118-264 40-162 (194)
142 COG2133 Glucose/sorbosone dehy 97.6 0.016 3.5E-07 53.5 19.9 162 100-265 181-386 (399)
143 KOG0265 U5 snRNP-specific prot 97.6 0.041 8.9E-07 48.0 22.5 188 37-267 51-238 (338)
144 KOG0643 Translation initiation 97.6 0.038 8.1E-07 47.5 20.5 190 38-267 15-212 (327)
145 KOG1539 WD repeat protein [Gen 97.6 0.0014 3.1E-08 64.0 13.3 150 37-229 497-646 (910)
146 COG3490 Uncharacterized protei 97.5 0.048 1E-06 47.4 20.9 208 99-329 71-315 (366)
147 COG3490 Uncharacterized protei 97.5 0.011 2.4E-07 51.2 16.6 161 41-233 121-312 (366)
148 KOG0285 Pleiotropic regulator 97.5 0.023 5E-07 50.6 18.7 159 98-288 154-316 (460)
149 KOG0263 Transcription initiati 97.5 0.0057 1.2E-07 59.4 15.8 161 27-232 487-650 (707)
150 KOG4328 WD40 protein [Function 97.5 0.033 7E-07 51.2 19.6 196 35-266 188-391 (498)
151 PF06433 Me-amine-dh_H: Methyl 97.4 0.013 2.9E-07 52.6 16.7 179 155-357 4-212 (342)
152 KOG0273 Beta-transducin family 97.4 0.096 2.1E-06 48.4 27.0 151 34-232 236-390 (524)
153 KOG0289 mRNA splicing factor [ 97.4 0.041 8.9E-07 50.3 19.6 122 143-290 305-430 (506)
154 PF05787 DUF839: Bacterial pro 97.4 0.0037 8E-08 60.5 14.2 121 96-218 350-519 (524)
155 KOG0283 WD40 repeat-containing 97.4 0.06 1.3E-06 52.9 21.9 158 100-287 374-540 (712)
156 PF14583 Pectate_lyase22: Olig 97.4 0.059 1.3E-06 49.4 20.6 171 40-233 42-226 (386)
157 KOG0296 Angio-associated migra 97.4 0.025 5.5E-07 50.5 17.4 203 22-267 179-390 (399)
158 KOG0645 WD40 repeat protein [G 97.4 0.055 1.2E-06 46.6 18.5 157 34-229 62-223 (312)
159 KOG0772 Uncharacterized conser 97.4 0.018 3.9E-07 53.7 16.7 236 34-297 215-463 (641)
160 KOG2139 WD40 repeat protein [G 97.3 0.11 2.3E-06 46.6 25.3 208 27-267 134-367 (445)
161 KOG0283 WD40 repeat-containing 97.3 0.016 3.5E-07 56.7 17.0 183 37-267 373-568 (712)
162 KOG0646 WD40 repeat protein [G 97.3 0.021 4.6E-07 52.4 16.6 152 37-231 85-247 (476)
163 PF05694 SBP56: 56kDa selenium 97.3 0.024 5.2E-07 52.5 17.1 193 32-264 128-393 (461)
164 COG3211 PhoX Predicted phospha 97.3 0.0028 6.1E-08 59.9 11.3 116 97-219 418-572 (616)
165 KOG2919 Guanine nucleotide-bin 97.3 0.0081 1.7E-07 52.8 13.1 189 43-263 121-315 (406)
166 KOG0639 Transducin-like enhanc 97.3 0.009 1.9E-07 55.4 13.9 182 38-266 470-654 (705)
167 KOG0299 U3 snoRNP-associated p 97.3 0.089 1.9E-06 48.4 20.0 149 38-232 207-357 (479)
168 KOG0639 Transducin-like enhanc 97.3 0.046 1E-06 50.9 18.2 116 97-233 467-583 (705)
169 KOG0973 Histone transcription 97.2 0.016 3.4E-07 58.5 16.1 103 142-265 130-239 (942)
170 TIGR03075 PQQ_enz_alc_DH PQQ-d 97.2 0.13 2.8E-06 50.3 22.2 127 44-196 69-196 (527)
171 KOG0645 WD40 repeat protein [G 97.2 0.12 2.7E-06 44.5 23.4 195 30-266 11-216 (312)
172 KOG0288 WD40 repeat protein Ti 97.2 0.03 6.6E-07 50.8 15.8 203 33-290 219-428 (459)
173 KOG1274 WD40 repeat protein [G 97.2 0.025 5.3E-07 56.2 16.3 156 36-231 99-262 (933)
174 COG3823 Glutamine cyclotransfe 97.2 0.026 5.7E-07 46.8 14.0 111 95-226 130-254 (262)
175 PF02333 Phytase: Phytase; In 97.1 0.039 8.5E-07 50.7 16.5 139 119-280 131-290 (381)
176 KOG4378 Nuclear protein COP1 [ 97.1 0.023 4.9E-07 52.8 14.6 191 35-268 81-273 (673)
177 PF05787 DUF839: Bacterial pro 97.1 0.011 2.4E-07 57.2 13.2 121 32-159 348-519 (524)
178 TIGR03118 PEPCTERM_chp_1 conse 97.1 0.19 4.2E-06 44.4 25.0 32 31-63 20-52 (336)
179 KOG0640 mRNA cleavage stimulat 97.1 0.012 2.7E-07 51.4 11.7 161 34-233 173-337 (430)
180 KOG0284 Polyadenylation factor 97.1 0.01 2.2E-07 53.7 11.5 179 38-265 101-284 (464)
181 PF01436 NHL: NHL repeat; Int 97.0 0.0012 2.6E-08 36.2 3.8 27 201-228 2-28 (28)
182 KOG4649 PQQ (pyrrolo-quinoline 97.0 0.18 3.8E-06 43.4 21.9 108 45-196 63-172 (354)
183 KOG1036 Mitotic spindle checkp 97.0 0.13 2.8E-06 45.1 17.7 150 34-232 14-164 (323)
184 KOG0305 Anaphase promoting com 97.0 0.28 6.1E-06 46.7 21.4 189 33-267 217-409 (484)
185 COG0823 TolB Periplasmic compo 97.0 0.33 7.1E-06 46.0 22.8 110 101-230 243-357 (425)
186 PF02333 Phytase: Phytase; In 97.0 0.17 3.7E-06 46.6 19.4 141 107-267 67-230 (381)
187 PF13449 Phytase-like: Esteras 97.0 0.12 2.6E-06 47.2 18.8 130 98-231 87-251 (326)
188 KOG0319 WD40-repeat-containing 97.0 0.4 8.7E-06 46.9 25.6 217 38-300 287-514 (775)
189 TIGR03032 conserved hypothetic 97.0 0.049 1.1E-06 48.3 15.1 142 33-220 102-260 (335)
190 KOG0646 WD40 repeat protein [G 97.0 0.11 2.3E-06 48.0 17.5 165 33-232 123-308 (476)
191 KOG0319 WD40-repeat-containing 96.9 0.21 4.5E-06 48.8 19.9 154 36-231 65-222 (775)
192 KOG2096 WD40 repeat protein [G 96.9 0.25 5.5E-06 43.6 21.0 138 107-267 197-353 (420)
193 KOG0275 Conserved WD40 repeat- 96.9 0.027 5.8E-07 49.5 12.5 150 37-226 352-504 (508)
194 KOG4328 WD40 protein [Function 96.9 0.17 3.6E-06 46.8 17.8 155 37-230 238-398 (498)
195 PF13449 Phytase-like: Esteras 96.9 0.18 3.9E-06 46.1 18.7 121 35-162 86-234 (326)
196 KOG3914 WD repeat protein WDR4 96.9 0.036 7.8E-07 50.1 13.4 157 34-234 63-226 (390)
197 KOG0273 Beta-transducin family 96.9 0.4 8.6E-06 44.6 21.8 181 35-263 277-470 (524)
198 KOG0303 Actin-binding protein 96.8 0.057 1.2E-06 48.8 14.3 147 47-233 146-296 (472)
199 KOG1036 Mitotic spindle checkp 96.8 0.12 2.5E-06 45.3 15.8 109 98-231 16-124 (323)
200 PHA02713 hypothetical protein; 96.8 0.5 1.1E-05 46.6 22.5 124 56-220 273-406 (557)
201 KOG0973 Histone transcription 96.8 0.081 1.7E-06 53.5 16.5 104 35-159 131-237 (942)
202 KOG2139 WD40 repeat protein [G 96.8 0.38 8.2E-06 43.3 19.4 211 31-268 193-424 (445)
203 KOG0268 Sof1-like rRNA process 96.8 0.045 9.7E-07 48.9 13.1 187 35-278 68-257 (433)
204 KOG0288 WD40 repeat protein Ti 96.8 0.08 1.7E-06 48.1 14.8 136 45-219 312-450 (459)
205 KOG0771 Prolactin regulatory e 96.8 0.077 1.7E-06 48.2 14.8 184 37-262 148-341 (398)
206 PF06433 Me-amine-dh_H: Methyl 96.7 0.42 9.2E-06 43.2 25.5 249 39-330 41-326 (342)
207 smart00135 LY Low-density lipo 96.7 0.0096 2.1E-07 36.1 6.3 36 198-233 6-41 (43)
208 KOG0281 Beta-TrCP (transducin 96.7 0.018 3.9E-07 51.1 9.9 179 41-267 243-421 (499)
209 KOG2110 Uncharacterized conser 96.7 0.34 7.4E-06 43.6 17.8 142 107-268 97-241 (391)
210 KOG0292 Vesicle coat complex C 96.7 0.62 1.3E-05 46.9 21.0 157 32-232 8-166 (1202)
211 KOG1273 WD40 repeat protein [G 96.6 0.18 3.9E-06 44.4 15.6 189 99-322 27-224 (405)
212 KOG0640 mRNA cleavage stimulat 96.6 0.12 2.6E-06 45.4 14.4 157 36-231 219-383 (430)
213 KOG2919 Guanine nucleotide-bin 96.6 0.052 1.1E-06 47.9 12.3 165 31-232 156-328 (406)
214 KOG0294 WD40 repeat-containing 96.6 0.45 9.7E-06 42.0 21.8 175 44-265 52-228 (362)
215 KOG0643 Translation initiation 96.6 0.22 4.8E-06 42.9 15.4 154 35-231 54-220 (327)
216 PF00930 DPPIV_N: Dipeptidyl p 96.5 0.29 6.3E-06 45.3 17.8 145 100-265 188-347 (353)
217 KOG0316 Conserved WD40 repeat- 96.5 0.13 2.7E-06 43.6 13.1 155 34-233 102-259 (307)
218 KOG0306 WD40-repeat-containing 96.5 1 2.2E-05 44.5 21.1 179 37-267 377-572 (888)
219 KOG2321 WD40 repeat protein [G 96.5 0.87 1.9E-05 43.5 20.7 173 37-233 55-260 (703)
220 COG3823 Glutamine cyclotransfe 96.5 0.42 9.1E-06 39.9 16.7 182 27-263 39-247 (262)
221 PF01436 NHL: NHL repeat; Int 96.5 0.0052 1.1E-07 33.7 3.4 28 33-60 1-28 (28)
222 KOG0313 Microtubule binding pr 96.4 0.34 7.4E-06 43.8 16.4 175 35-233 195-378 (423)
223 PRK13684 Ycf48-like protein; P 96.4 0.72 1.6E-05 42.3 29.5 190 30-265 42-234 (334)
224 KOG0284 Polyadenylation factor 96.4 0.042 9E-07 49.8 10.6 151 37-231 142-294 (464)
225 COG3211 PhoX Predicted phospha 96.4 0.047 1E-06 52.0 11.4 123 31-160 414-572 (616)
226 COG1520 FOG: WD40-like repeat 96.3 0.9 2E-05 42.3 26.2 149 41-233 65-219 (370)
227 KOG4441 Proteins containing BT 96.2 0.37 8.1E-06 47.5 17.1 150 44-233 332-501 (571)
228 PF05694 SBP56: 56kDa selenium 96.1 1.2 2.5E-05 41.7 18.4 254 21-289 51-355 (461)
229 KOG0294 WD40 repeat-containing 96.1 0.61 1.3E-05 41.2 15.6 151 36-233 130-283 (362)
230 PF14870 PSII_BNR: Photosynthe 96.0 1.1 2.3E-05 40.4 22.6 179 38-266 66-253 (302)
231 KOG4441 Proteins containing BT 96.0 1.3 2.9E-05 43.7 20.1 141 55-233 301-454 (571)
232 KOG0301 Phospholipase A2-activ 96.0 1.7 3.7E-05 42.4 19.6 198 38-290 19-218 (745)
233 KOG0265 U5 snRNP-specific prot 95.9 1.1 2.3E-05 39.5 20.0 150 38-232 95-247 (338)
234 PHA02713 hypothetical protein; 95.9 0.24 5.2E-06 48.8 14.4 149 44-232 351-534 (557)
235 KOG0308 Conserved WD40 repeat- 95.9 0.47 1E-05 45.8 15.3 156 38-231 78-243 (735)
236 TIGR02276 beta_rpt_yvtn 40-res 95.9 0.05 1.1E-06 32.7 6.3 42 151-209 1-42 (42)
237 KOG4378 Nuclear protein COP1 [ 95.9 0.6 1.3E-05 43.8 15.5 113 99-233 168-282 (673)
238 KOG0295 WD40 repeat-containing 95.8 1.2 2.6E-05 40.2 16.7 168 36-233 196-366 (406)
239 PLN00033 photosystem II stabil 95.8 1.3 2.7E-05 41.6 17.9 147 39-228 244-396 (398)
240 KOG1009 Chromatin assembly com 95.7 0.48 1E-05 43.2 14.0 101 93-214 63-179 (434)
241 KOG0301 Phospholipase A2-activ 95.6 0.83 1.8E-05 44.5 15.8 107 97-231 142-249 (745)
242 KOG0276 Vesicle coat complex C 95.6 2.5 5.3E-05 41.0 20.3 153 37-232 17-172 (794)
243 KOG1963 WD40 repeat protein [G 95.5 0.53 1.2E-05 46.9 14.7 158 36-233 208-377 (792)
244 TIGR03075 PQQ_enz_alc_DH PQQ-d 95.5 2.7 5.9E-05 41.1 30.5 169 44-233 120-335 (527)
245 KOG0771 Prolactin regulatory e 95.4 0.43 9.3E-06 43.6 12.7 157 35-231 188-354 (398)
246 PHA03098 kelch-like protein; P 95.4 2.4 5.1E-05 41.6 19.3 139 56-233 312-466 (534)
247 KOG0264 Nucleosome remodeling 95.4 0.3 6.6E-06 44.8 11.8 163 36-231 180-347 (422)
248 KOG0305 Anaphase promoting com 95.4 0.72 1.6E-05 43.9 14.8 155 37-232 305-462 (484)
249 KOG2321 WD40 repeat protein [G 95.3 0.48 1E-05 45.2 12.9 162 37-230 179-342 (703)
250 KOG0302 Ribosome Assembly prot 95.3 1.6 3.5E-05 39.6 15.5 120 96-234 212-335 (440)
251 PHA02790 Kelch-like protein; P 95.2 1.3 2.9E-05 42.8 16.7 140 43-231 317-470 (480)
252 KOG0292 Vesicle coat complex C 95.2 4 8.7E-05 41.4 24.5 68 200-268 206-273 (1202)
253 KOG0649 WD40 repeat protein [G 95.2 1.8 3.9E-05 37.1 18.8 159 98-291 117-285 (325)
254 KOG0313 Microtubule binding pr 95.2 0.95 2.1E-05 41.0 13.8 149 37-229 264-416 (423)
255 KOG1963 WD40 repeat protein [G 95.1 1.8 3.8E-05 43.4 16.8 153 36-231 163-322 (792)
256 PF07494 Reg_prop: Two compone 95.0 0.032 7E-07 29.3 2.7 16 249-264 8-23 (24)
257 COG1520 FOG: WD40-like repeat 95.0 3.1 6.7E-05 38.7 18.6 103 107-232 68-172 (370)
258 KOG1538 Uncharacterized conser 94.9 4.1 8.9E-05 40.0 22.6 203 34-287 13-259 (1081)
259 KOG0307 Vesicle coat complex C 94.9 0.24 5.2E-06 50.7 10.5 215 38-291 69-296 (1049)
260 KOG0306 WD40-repeat-containing 94.9 3.1 6.8E-05 41.2 17.4 181 37-263 69-262 (888)
261 KOG0302 Ribosome Assembly prot 94.8 0.81 1.7E-05 41.5 12.3 157 37-231 215-378 (440)
262 KOG0274 Cdc4 and related F-box 94.7 4.7 0.0001 39.5 25.7 171 44-266 218-392 (537)
263 KOG4649 PQQ (pyrrolo-quinoline 94.7 2.6 5.7E-05 36.5 22.7 151 36-232 15-166 (354)
264 KOG0295 WD40 repeat-containing 94.6 3.3 7.2E-05 37.4 18.1 153 38-233 113-267 (406)
265 KOG0299 U3 snoRNP-associated p 94.6 4 8.7E-05 38.0 19.8 203 30-263 139-345 (479)
266 PHA02790 Kelch-like protein; P 94.5 4 8.6E-05 39.5 17.7 133 55-232 287-424 (480)
267 TIGR02276 beta_rpt_yvtn 40-res 94.5 0.26 5.6E-06 29.5 6.3 42 210-254 1-42 (42)
268 KOG0647 mRNA export protein (c 94.4 3.3 7.2E-05 36.6 22.9 197 24-267 18-221 (347)
269 KOG4497 Uncharacterized conser 94.3 1.3 2.9E-05 39.5 12.4 140 38-220 13-153 (447)
270 KOG3881 Uncharacterized conser 94.2 0.86 1.9E-05 41.4 11.3 99 38-159 207-307 (412)
271 PHA03098 kelch-like protein; P 94.1 4.6 9.9E-05 39.6 17.7 140 55-232 358-512 (534)
272 PLN00033 photosystem II stabil 94.1 5.2 0.00011 37.6 25.6 83 180-265 258-347 (398)
273 KOG0308 Conserved WD40 repeat- 94.1 1.2 2.6E-05 43.3 12.5 155 31-230 169-326 (735)
274 KOG2110 Uncharacterized conser 94.0 4.7 0.0001 36.6 17.6 133 181-322 106-246 (391)
275 PF00930 DPPIV_N: Dipeptidyl p 93.9 5.2 0.00011 36.9 18.8 94 107-220 248-347 (353)
276 KOG1188 WD40 repeat protein [G 93.9 3.5 7.5E-05 37.0 14.2 188 46-269 41-237 (376)
277 PF15492 Nbas_N: Neuroblastoma 93.8 4.3 9.4E-05 35.5 17.7 42 29-70 37-80 (282)
278 KOG1445 Tumor-specific antigen 93.7 0.38 8.2E-06 46.4 8.5 157 38-229 632-796 (1012)
279 KOG1538 Uncharacterized conser 93.6 4.2 9.2E-05 39.9 15.2 154 35-231 134-293 (1081)
280 KOG3621 WD40 repeat-containing 93.6 4.9 0.00011 39.6 15.8 103 40-162 40-145 (726)
281 KOG1408 WD40 repeat protein [F 93.6 3.8 8.3E-05 40.5 15.0 220 32-298 458-690 (1080)
282 PF08553 VID27: VID27 cytoplas 93.6 2.8 6E-05 42.7 14.8 103 107-230 542-646 (794)
283 KOG1445 Tumor-specific antigen 93.4 0.51 1.1E-05 45.6 8.9 148 48-232 693-845 (1012)
284 PF14870 PSII_BNR: Photosynthe 93.3 6 0.00013 35.6 27.6 195 26-267 9-208 (302)
285 KOG0321 WD40 repeat-containing 93.3 8.8 0.00019 37.5 17.7 68 206-279 223-300 (720)
286 KOG3881 Uncharacterized conser 93.2 1.6 3.4E-05 39.8 11.1 111 100-232 207-321 (412)
287 PRK13616 lipoprotein LpqB; Pro 93.1 10 0.00022 37.8 20.2 71 143-233 449-529 (591)
288 smart00135 LY Low-density lipo 93.1 0.39 8.5E-06 28.7 5.4 38 28-65 3-41 (43)
289 KOG4227 WD40 repeat protein [G 92.9 7.4 0.00016 35.7 19.6 162 36-232 59-226 (609)
290 PRK13616 lipoprotein LpqB; Pro 92.9 11 0.00024 37.5 24.2 112 145-266 400-517 (591)
291 KOG0322 G-protein beta subunit 92.8 1.2 2.6E-05 38.5 9.5 70 142-230 252-322 (323)
292 KOG0649 WD40 repeat protein [G 92.7 5.9 0.00013 34.0 17.6 80 35-134 116-195 (325)
293 PRK13684 Ycf48-like protein; P 92.7 7.9 0.00017 35.5 23.3 138 98-265 134-279 (334)
294 PF02897 Peptidase_S9_N: Proly 92.5 9.5 0.00021 35.9 22.4 121 100-232 128-261 (414)
295 KOG0641 WD40 repeat protein [G 92.5 5.9 0.00013 33.5 22.0 79 202-289 233-312 (350)
296 KOG0270 WD40 repeat-containing 92.5 9.1 0.0002 35.6 17.8 145 47-233 258-406 (463)
297 PF14339 DUF4394: Domain of un 92.5 6.4 0.00014 33.8 14.0 114 97-228 28-160 (236)
298 COG5276 Uncharacterized conser 92.4 7.5 0.00016 34.5 18.8 135 107-267 96-234 (370)
299 KOG0650 WD40 repeat nucleolar 92.3 10 0.00022 36.8 15.6 103 143-267 523-630 (733)
300 PF07494 Reg_prop: Two compone 92.2 0.26 5.6E-06 25.7 3.1 19 141-160 4-22 (24)
301 KOG1272 WD40-repeat-containing 92.1 2 4.4E-05 40.0 10.6 40 27-67 124-163 (545)
302 COG0823 TolB Periplasmic compo 91.8 12 0.00026 35.5 17.1 123 118-263 219-343 (425)
303 PF02897 Peptidase_S9_N: Proly 91.7 12 0.00026 35.3 21.8 210 38-290 128-368 (414)
304 KOG0268 Sof1-like rRNA process 91.7 1.4 3E-05 39.8 8.8 153 35-231 189-345 (433)
305 KOG0277 Peroxisomal targeting 91.5 8.6 0.00019 33.3 13.5 159 35-233 10-180 (311)
306 KOG0641 WD40 repeat protein [G 91.5 7.9 0.00017 32.8 25.1 75 206-287 187-269 (350)
307 KOG0300 WD40 repeat-containing 91.5 6.1 0.00013 35.2 12.3 151 110-289 287-437 (481)
308 KOG1523 Actin-related protein 91.2 9.6 0.00021 34.1 13.3 156 35-229 12-174 (361)
309 KOG4547 WD40 repeat-containing 91.0 16 0.00034 35.3 19.5 99 112-233 75-174 (541)
310 KOG2315 Predicted translation 90.9 16 0.00034 35.2 16.3 113 97-232 272-391 (566)
311 TIGR03074 PQQ_membr_DH membran 90.8 22 0.00047 36.6 20.7 140 46-197 261-430 (764)
312 PF00058 Ldl_recept_b: Low-den 90.6 1.2 2.6E-05 26.9 5.3 39 214-255 2-42 (42)
313 KOG0303 Actin-binding protein 90.3 15 0.00032 33.9 18.4 83 180-264 153-235 (472)
314 KOG1034 Transcriptional repres 90.3 13 0.00028 33.5 13.2 84 178-263 112-199 (385)
315 KOG0650 WD40 repeat nucleolar 90.3 2.9 6.3E-05 40.3 10.0 157 28-229 516-678 (733)
316 PF14583 Pectate_lyase22: Olig 90.1 16 0.00034 34.0 23.3 128 118-266 169-303 (386)
317 KOG2394 WD40 protein DMR-N9 [G 90.0 2 4.4E-05 40.8 8.6 101 25-151 283-384 (636)
318 PF00058 Ldl_recept_b: Low-den 90.0 1.6 3.4E-05 26.4 5.5 41 45-105 1-42 (42)
319 KOG0269 WD40 repeat-containing 89.8 20 0.00043 36.0 15.3 149 47-235 102-254 (839)
320 KOG0277 Peroxisomal targeting 89.8 13 0.00027 32.3 15.1 157 36-233 63-223 (311)
321 PF14269 Arylsulfotran_2: Aryl 89.5 15 0.00034 33.0 20.7 39 143-199 145-183 (299)
322 PF01731 Arylesterase: Arylest 89.3 1.5 3.4E-05 31.2 5.8 40 24-63 44-84 (86)
323 KOG1898 Splicing factor 3b, su 89.0 32 0.0007 36.0 21.6 79 184-266 917-996 (1205)
324 COG4247 Phy 3-phytase (myo-ino 88.6 16 0.00034 31.8 20.8 86 181-267 126-227 (364)
325 KOG1215 Low-density lipoprotei 88.4 36 0.00078 35.8 18.0 195 28-265 431-629 (877)
326 KOG0647 mRNA export protein (c 88.0 19 0.00041 32.0 20.2 214 38-304 77-306 (347)
327 KOG0281 Beta-TrCP (transducin 87.9 7.6 0.00016 35.1 10.3 117 146-290 240-359 (499)
328 KOG1408 WD40 repeat protein [F 87.8 7.3 0.00016 38.7 10.9 114 98-231 599-713 (1080)
329 TIGR03548 mutarot_permut cycli 87.6 21 0.00047 32.3 15.5 59 55-133 139-202 (323)
330 KOG0307 Vesicle coat complex C 87.6 3.7 7.9E-05 42.5 9.2 160 38-232 121-285 (1049)
331 KOG0264 Nucleosome remodeling 87.2 25 0.00055 32.7 13.7 157 37-231 231-404 (422)
332 KOG4547 WD40 repeat-containing 87.2 30 0.00064 33.5 17.4 123 47-211 72-195 (541)
333 COG4247 Phy 3-phytase (myo-ino 87.2 19 0.00042 31.3 20.4 31 202-233 206-236 (364)
334 PLN02153 epithiospecifier prot 87.1 24 0.00052 32.3 17.5 119 55-197 50-175 (341)
335 KOG2111 Uncharacterized conser 86.8 23 0.00049 31.7 18.1 72 143-233 183-258 (346)
336 KOG0274 Cdc4 and related F-box 86.5 35 0.00075 33.6 22.5 204 29-289 245-451 (537)
337 PF00400 WD40: WD domain, G-be 86.2 3.6 7.7E-05 23.7 5.4 29 33-61 11-39 (39)
338 TIGR03074 PQQ_membr_DH membran 86.2 44 0.00096 34.4 24.0 25 107-131 194-218 (764)
339 PF14517 Tachylectin: Tachylec 86.0 2.7 5.8E-05 35.9 6.3 131 26-190 73-207 (229)
340 PF14517 Tachylectin: Tachylec 85.9 8.9 0.00019 32.8 9.4 159 33-229 33-204 (229)
341 PLN02153 epithiospecifier prot 85.8 28 0.00061 31.8 17.6 120 55-197 101-233 (341)
342 PLN02193 nitrile-specifier pro 85.5 36 0.00079 32.8 17.2 111 107-233 228-353 (470)
343 KOG1215 Low-density lipoprotei 85.5 47 0.001 34.9 16.7 162 27-230 473-638 (877)
344 PF05935 Arylsulfotrans: Aryls 85.4 35 0.00075 33.1 14.5 120 39-198 153-310 (477)
345 TIGR03548 mutarot_permut cycli 84.9 30 0.00065 31.4 18.7 74 107-197 123-202 (323)
346 KOG1272 WD40-repeat-containing 84.8 3.2 7E-05 38.8 6.7 120 142-289 130-249 (545)
347 KOG0269 WD40 repeat-containing 84.8 46 0.00099 33.6 14.6 178 35-255 135-319 (839)
348 PF00400 WD40: WD domain, G-be 84.5 5.4 0.00012 22.9 5.7 32 197-229 8-39 (39)
349 KOG0276 Vesicle coat complex C 84.3 45 0.00097 32.9 19.6 148 43-232 65-216 (794)
350 PF14269 Arylsulfotran_2: Aryl 84.0 32 0.00069 31.0 15.3 39 33-71 143-181 (299)
351 KOG0267 Microtubule severing p 83.9 11 0.00023 37.5 9.9 175 36-261 73-254 (825)
352 PF06739 SBBP: Beta-propeller 83.4 1.2 2.6E-05 26.2 2.3 20 247-266 14-33 (38)
353 KOG1009 Chromatin assembly com 82.5 8.5 0.00018 35.4 8.2 114 36-162 68-184 (434)
354 KOG1230 Protein containing rep 82.3 44 0.00095 31.3 13.3 134 55-217 98-248 (521)
355 PF07172 GRP: Glycine rich pro 81.9 1.1 2.5E-05 32.5 2.2 21 1-21 1-21 (95)
356 PLN02193 nitrile-specifier pro 80.8 56 0.0012 31.5 19.2 110 55-197 244-359 (470)
357 PRK14131 N-acetylneuraminic ac 79.9 52 0.0011 30.6 18.6 27 107-133 84-122 (376)
358 KOG2315 Predicted translation 79.9 61 0.0013 31.4 16.7 118 182-323 252-374 (566)
359 KOG2395 Protein involved in va 79.8 51 0.0011 31.9 12.5 100 110-230 397-499 (644)
360 KOG3914 WD repeat protein WDR4 79.1 32 0.00069 31.7 10.7 69 143-230 109-180 (390)
361 PF14339 DUF4394: Domain of un 78.9 42 0.00091 29.0 19.5 79 36-130 29-108 (236)
362 KOG4227 WD40 repeat protein [G 78.6 27 0.00058 32.2 10.0 72 38-127 110-181 (609)
363 COG5276 Uncharacterized conser 78.5 49 0.0011 29.6 23.4 141 98-267 131-278 (370)
364 KOG0321 WD40 repeat-containing 78.2 12 0.00026 36.6 8.1 105 107-231 64-175 (720)
365 PF11768 DUF3312: Protein of u 77.3 17 0.00038 35.1 9.0 73 34-128 260-332 (545)
366 KOG0270 WD40 repeat-containing 77.2 65 0.0014 30.3 19.8 105 108-233 256-362 (463)
367 PF10647 Gmad1: Lipoprotein Lp 77.0 50 0.0011 28.8 19.8 156 35-231 25-197 (253)
368 KOG1310 WD40 repeat protein [G 76.1 35 0.00075 33.1 10.3 104 37-159 54-166 (758)
369 KOG2111 Uncharacterized conser 75.8 60 0.0013 29.2 16.2 137 181-322 113-254 (346)
370 KOG0918 Selenium-binding prote 75.3 11 0.00023 34.9 6.7 44 143-189 390-434 (476)
371 KOG1332 Vesicle coat complex C 75.3 54 0.0012 28.4 17.6 36 34-69 56-94 (299)
372 KOG1523 Actin-related protein 73.8 69 0.0015 28.9 12.5 60 37-114 59-119 (361)
373 KOG4497 Uncharacterized conser 73.8 42 0.0009 30.4 9.7 77 180-261 70-149 (447)
374 PF05935 Arylsulfotrans: Aryls 73.1 93 0.002 30.1 18.0 122 101-232 153-302 (477)
375 KOG1310 WD40 repeat protein [G 73.1 95 0.0021 30.2 17.4 117 96-233 51-180 (758)
376 TIGR03547 muta_rot_YjhT mutatr 72.9 76 0.0016 29.0 19.1 49 107-159 63-124 (346)
377 PF07250 Glyoxal_oxid_N: Glyox 72.6 64 0.0014 28.1 12.8 128 119-266 48-190 (243)
378 PF13570 PQQ_3: PQQ-like domai 72.5 13 0.00027 21.8 4.6 26 37-64 15-40 (40)
379 PF02191 OLF: Olfactomedin-lik 72.3 67 0.0014 28.1 18.6 156 44-230 78-246 (250)
380 KOG1063 RNA polymerase II elon 72.2 1.1E+02 0.0024 30.6 15.1 104 38-160 272-379 (764)
381 PF01011 PQQ: PQQ enzyme repea 71.7 8.1 0.00018 22.5 3.5 22 48-69 3-24 (38)
382 smart00284 OLF Olfactomedin-li 71.6 70 0.0015 28.0 18.1 164 34-230 75-251 (255)
383 smart00564 PQQ beta-propeller 71.1 9.8 0.00021 21.0 3.7 24 43-67 5-28 (33)
384 KOG1063 RNA polymerase II elon 71.1 88 0.0019 31.3 11.9 63 35-118 527-594 (764)
385 KOG2394 WD40 protein DMR-N9 [G 70.2 17 0.00037 34.9 6.9 54 96-154 291-345 (636)
386 KOG0290 Conserved WD40 repeat- 67.5 92 0.002 27.8 14.7 152 95-264 196-354 (364)
387 PF08553 VID27: VID27 cytoplas 66.9 1.6E+02 0.0035 30.5 17.3 143 97-265 482-638 (794)
388 PF11768 DUF3312: Protein of u 65.6 1.4E+02 0.003 29.2 15.0 70 143-232 261-330 (545)
389 PF09910 DUF2139: Uncharacteri 64.2 1.1E+02 0.0024 27.5 23.2 88 33-134 55-148 (339)
390 KOG0642 Cell-cycle nuclear pro 63.7 75 0.0016 30.8 9.7 157 37-231 400-561 (577)
391 KOG4283 Transcription-coupled 59.2 1.3E+02 0.0029 26.9 16.8 116 108-233 158-278 (397)
392 KOG0918 Selenium-binding prote 58.2 28 0.0006 32.3 5.7 31 204-234 315-345 (476)
393 KOG1354 Serine/threonine prote 57.3 1.6E+02 0.0034 27.1 13.3 166 35-233 166-361 (433)
394 COG4447 Uncharacterized protei 56.6 1.3E+02 0.0027 26.8 9.2 42 26-67 35-76 (339)
395 TIGR02608 delta_60_rpt delta-6 56.5 18 0.00039 23.3 3.2 30 36-65 3-39 (55)
396 PF11466 Doppel: Prion-like pr 56.4 11 0.00024 20.6 1.8 19 1-19 1-19 (30)
397 PF15390 DUF4613: Domain of un 55.1 1.2E+02 0.0025 30.0 9.5 64 198-261 336-400 (671)
398 smart00284 OLF Olfactomedin-li 54.2 1.5E+02 0.0033 26.0 15.3 109 107-232 83-209 (255)
399 KOG1007 WD repeat protein TSSC 53.0 1.7E+02 0.0037 26.2 11.7 159 35-229 125-287 (370)
400 KOG2377 Uncharacterized conser 52.0 2.2E+02 0.0049 27.3 13.2 149 33-218 22-171 (657)
401 KOG0974 WD-repeat protein WDR6 51.4 3.2E+02 0.0069 28.8 16.2 134 107-262 99-234 (967)
402 KOG3621 WD40 repeat-containing 50.6 46 0.00099 33.2 6.2 87 180-267 54-147 (726)
403 KOG4283 Transcription-coupled 50.1 1.9E+02 0.0042 25.9 20.4 89 178-267 165-269 (397)
404 KOG2314 Translation initiation 49.8 2.6E+02 0.0057 27.4 11.5 62 201-265 493-557 (698)
405 PRK14131 N-acetylneuraminic ac 49.7 2.2E+02 0.0047 26.4 14.8 17 55-71 189-205 (376)
406 KOG0300 WD40 repeat-containing 49.0 2.1E+02 0.0044 25.9 15.2 165 25-234 260-431 (481)
407 KOG0322 G-protein beta subunit 48.5 54 0.0012 28.8 5.7 32 34-65 252-283 (323)
408 KOG1332 Vesicle coat complex C 48.4 1.9E+02 0.004 25.3 16.7 99 35-153 13-114 (299)
409 PF13970 DUF4221: Domain of un 47.8 2.2E+02 0.0047 25.9 14.7 181 27-229 33-240 (333)
410 KOG1230 Protein containing rep 47.6 2.5E+02 0.0054 26.5 14.4 163 35-220 123-316 (521)
411 KOG1900 Nuclear pore complex, 47.1 4.1E+02 0.0089 29.1 12.7 30 204-234 246-275 (1311)
412 PF04053 Coatomer_WDAD: Coatom 46.1 2.8E+02 0.006 26.6 17.9 142 34-231 33-175 (443)
413 PF15492 Nbas_N: Neuroblastoma 45.7 2.2E+02 0.0047 25.3 22.4 30 330-359 230-260 (282)
414 KOG1188 WD40 repeat protein [G 45.4 2.4E+02 0.0053 25.8 11.7 83 180-263 49-135 (376)
415 PF08309 LVIVD: LVIVD repeat; 45.1 68 0.0015 19.3 4.8 26 99-126 5-30 (42)
416 smart00320 WD40 WD40 repeats. 44.3 42 0.00091 17.4 3.4 27 35-61 14-40 (40)
417 KOG1517 Guanine nucleotide bin 43.4 4.5E+02 0.0098 28.3 14.5 161 34-231 1209-1381(1387)
418 PRK13792 lysozyme inhibitor; P 40.8 28 0.00062 26.8 2.7 20 1-21 1-20 (127)
419 KOG1524 WD40 repeat-containing 40.6 3.6E+02 0.0079 26.4 16.8 31 38-68 19-49 (737)
420 KOG1645 RING-finger-containing 40.2 1.2E+02 0.0026 28.3 6.9 53 181-233 216-268 (463)
421 PF07676 PD40: WD40-like Beta 40.1 72 0.0016 18.2 4.6 19 204-222 12-30 (39)
422 TIGR03547 muta_rot_YjhT mutatr 39.7 2.9E+02 0.0064 25.1 16.0 17 55-71 168-184 (346)
423 KOG1645 RING-finger-containing 39.7 1.2E+02 0.0026 28.4 6.7 72 35-127 195-268 (463)
424 KOG4640 Anaphase-promoting com 39.5 63 0.0014 31.9 5.3 41 25-65 54-94 (665)
425 COG4590 ABC-type uncharacteriz 39.2 3.4E+02 0.0073 26.1 9.6 29 36-65 223-251 (733)
426 KOG1240 Protein kinase contain 38.9 5.6E+02 0.012 28.1 14.8 51 180-231 1172-1225(1431)
427 PF03178 CPSF_A: CPSF A subuni 38.0 3E+02 0.0065 24.7 16.1 111 96-231 89-202 (321)
428 COG5354 Uncharacterized protei 37.6 3.9E+02 0.0085 25.9 12.3 98 98-218 277-377 (561)
429 PF09826 Beta_propel: Beta pro 37.1 4.2E+02 0.0091 26.1 15.0 51 306-358 304-355 (521)
430 KOG0642 Cell-cycle nuclear pro 36.6 4.2E+02 0.0091 26.0 13.1 73 37-124 298-373 (577)
431 KOG1007 WD repeat protein TSSC 33.3 3.6E+02 0.0078 24.2 10.3 116 97-232 125-246 (370)
432 PF12768 Rax2: Cortical protei 32.6 3.6E+02 0.0079 24.0 9.3 83 56-159 17-107 (281)
433 PF13418 Kelch_4: Galactose ox 30.9 79 0.0017 19.1 3.2 16 55-70 29-44 (49)
434 KOG1587 Cytoplasmic dynein int 30.1 5.6E+02 0.012 25.5 14.5 31 203-233 444-474 (555)
435 PF03082 MAGSP: Male accessory 30.0 38 0.00082 28.3 1.9 22 1-22 1-22 (264)
436 PF00780 CNH: CNH domain; Int 29.2 3.8E+02 0.0082 23.2 17.3 41 107-154 7-48 (275)
437 KOG1034 Transcriptional repres 29.0 4.5E+02 0.0098 24.0 15.7 107 103-231 99-211 (385)
438 PF12894 Apc4_WD40: Anaphase-p 28.9 1.5E+02 0.0032 18.3 4.2 28 37-64 15-42 (47)
439 KOG2314 Translation initiation 28.8 3.6E+02 0.0078 26.5 8.3 58 142-214 493-551 (698)
440 COG5354 Uncharacterized protei 28.8 4.6E+02 0.01 25.5 8.9 116 99-230 36-159 (561)
441 PF05131 Pep3_Vps18: Pep3/Vps1 28.7 3E+02 0.0064 21.8 8.0 69 35-125 35-103 (147)
442 KOG3567 Peptidylglycine alpha- 28.0 1.1E+02 0.0023 29.2 4.6 23 139-162 464-486 (501)
443 KOG4190 Uncharacterized conser 27.5 3.6E+02 0.0077 26.5 8.0 119 143-286 786-913 (1034)
444 TIGR02171 Fb_sc_TIGR02171 Fibr 26.8 3.7E+02 0.008 28.3 8.5 58 182-239 330-393 (912)
445 PF10880 DUF2673: Protein of u 26.5 59 0.0013 20.7 1.9 22 1-22 1-22 (65)
446 PF13964 Kelch_6: Kelch motif 25.6 1.3E+02 0.0029 18.2 3.6 17 55-71 28-44 (50)
447 KOG4190 Uncharacterized conser 25.2 3.2E+02 0.0068 26.8 7.2 122 35-194 786-911 (1034)
448 PF14779 BBS1: Ciliary BBSome 24.7 2.5E+02 0.0053 24.7 6.1 18 48-65 198-215 (257)
449 KOG0267 Microtubule severing p 24.2 2E+02 0.0043 29.1 5.9 32 37-68 158-189 (825)
450 PF15390 DUF4613: Domain of un 24.0 2.8E+02 0.006 27.6 6.7 68 27-113 332-401 (671)
451 KOG2437 Muskelin [Signal trans 23.9 6.2E+02 0.014 24.7 8.8 128 98-231 263-412 (723)
452 KOG4532 WD40-like repeat conta 23.7 5.3E+02 0.011 23.0 16.2 54 178-233 137-190 (344)
453 KOG4693 Uncharacterized conser 23.6 4.5E+02 0.0097 23.4 7.3 87 52-158 213-307 (392)
454 COG5167 VID27 Protein involved 23.4 7.2E+02 0.016 24.5 11.4 100 110-231 530-632 (776)
455 PRK11548 outer membrane biogen 22.8 66 0.0014 24.2 2.0 23 1-23 1-23 (113)
456 COG2319 FOG: WD40 repeat [Gene 21.6 5.7E+02 0.012 22.6 19.4 152 37-232 159-315 (466)
457 KOG2395 Protein involved in va 21.2 2.8E+02 0.0061 27.1 6.1 66 37-124 434-499 (644)
458 COG5510 Predicted small secret 21.1 82 0.0018 19.1 1.7 21 1-21 2-23 (44)
459 PF02191 OLF: Olfactomedin-lik 20.8 5.7E+02 0.012 22.3 14.4 87 180-266 88-190 (250)
460 PF03032 Brevenin: Brevenin/es 20.0 50 0.0011 20.4 0.7 11 1-11 3-13 (46)
No 1
>KOG1520 consensus Predicted alkaloid synthase/Surface mucin Hemomucin [General function prediction only]
Probab=100.00 E-value=8.1e-37 Score=268.17 Aligned_cols=326 Identities=48% Similarity=0.851 Sum_probs=283.1
Q ss_pred EeeCCCCCCceEEEccCCCeeEEecCCCEEEEEEcCCcceEEEeec--CCCCCCCCCCcccccccccccCCcceEEEEec
Q 018242 28 YQIEGAIGPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFART--SPNRDGCEGAYEYDHAAKEHICGRPLGLCFNK 105 (359)
Q Consensus 28 ~~~~~~~~p~~i~~~~~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~ 105 (359)
++.....+||.+.+|+.|.=-|++..++++.+|......|..+... ..++..|.+|.. ....+.+++|.||+++.
T Consensus 48 ~~~~~~~g~E~~~fd~~~~gp~~~v~dg~il~~~g~~~Gwv~~~~~~~s~~~~~~~~~~~---~~~e~~CGRPLGl~f~~ 124 (376)
T KOG1520|consen 48 IPNNHLTGPESLLFDPQGGGPYTGVVDGRILKYTGNDDGWVKFADTKDSTNRSQCCDPGS---FETEPLCGRPLGIRFDK 124 (376)
T ss_pred ccccccCChhhheecccCCCceEEEECCceEEEeccCceEEEEEeccccccccccCCCcc---eecccccCCcceEEecc
Confidence 3444578999999999886688888889999999886678888877 666666655422 24556789999999999
Q ss_pred CCCeEEEEeCCCcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEE
Q 018242 106 TNGDLYIADAYFGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMK 185 (359)
Q Consensus 106 ~~g~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~ 185 (359)
+.|+|||||.+-|++.+++++++.+.+.+...+.++.+.|++.++++|. +|++|++++|.++++...+.++..+|++++
T Consensus 125 ~ggdL~VaDAYlGL~~V~p~g~~a~~l~~~~~G~~~kf~N~ldI~~~g~-vyFTDSSsk~~~rd~~~a~l~g~~~GRl~~ 203 (376)
T KOG1520|consen 125 KGGDLYVADAYLGLLKVGPEGGLAELLADEAEGKPFKFLNDLDIDPEGV-VYFTDSSSKYDRRDFVFAALEGDPTGRLFR 203 (376)
T ss_pred CCCeEEEEecceeeEEECCCCCcceeccccccCeeeeecCceeEcCCCe-EEEeccccccchhheEEeeecCCCccceEE
Confidence 7789999999999999999999877777777788889999999999999 999999999999999999999999999999
Q ss_pred EeCCCCcEEEEeCCCCCCceEEEccCCCEEEEEecCCCEEEEEEcCCCCCcceeEeec-CCCCCCceEECCCCCEEEEEe
Q 018242 186 YDPATKQVTVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQ-LPGFPDNIKRSPRGGFWVGIH 264 (359)
Q Consensus 186 ~d~~~~~~~~~~~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~p~~i~~d~~G~lwv~~~ 264 (359)
||+.++..+.+..++..|||+++++|+..++++++...+|.+|.+++++.++.+.|++ +||+||||..+++|.+||+..
T Consensus 204 YD~~tK~~~VLld~L~F~NGlaLS~d~sfvl~~Et~~~ri~rywi~g~k~gt~EvFa~~LPG~PDNIR~~~~G~fWVal~ 283 (376)
T KOG1520|consen 204 YDPSTKVTKVLLDGLYFPNGLALSPDGSFVLVAETTTARIKRYWIKGPKAGTSEVFAEGLPGYPDNIRRDSTGHFWVALH 283 (376)
T ss_pred ecCcccchhhhhhcccccccccCCCCCCEEEEEeeccceeeeeEecCCccCchhhHhhcCCCCCcceeECCCCCEEEEEe
Confidence 9999988888888999999999999999999999999999999999998888899998 999999999999999999998
Q ss_pred cCCCccccccccCCccceeeecCCccceeeeeecccccCcceEEEEECCCCCEEEEEEccCCceeeceEEEEEeCCEEEE
Q 018242 265 SRRKGISKLVLSFPWIGNVLIKLPIDIVKIHSSLVKLSGNGGMAMRISEQGNVLEILEEIGRKMWRSISEVEEKDGNLWI 344 (359)
Q Consensus 265 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~g~l~i 344 (359)
..+...+++...++.-++.+..++....-......+..++ ..+...+.+|++++++++++|+....+..+.+.+|+||+
T Consensus 284 ~~~~~~~~~~~~~p~vr~~~~~~~~~~~~~~~~~~~~~p~-~~V~~~d~~G~il~~lhD~~g~~~~~~sev~E~dg~Lyi 362 (376)
T KOG1520|consen 284 SKRSTLWRLLMKYPWVRKFIAKLPKYMELLYFLNNGGKPH-SAVKLSDETGKILESLHDKEGKVITLVSEVGEHDGHLYI 362 (376)
T ss_pred cccchHHHhhhcChHHHHHHHhhccchhhhhhhhccCCCc-eEEEEecCCCcEEEEEecCCCCceEEEEEEeecCCeEEE
Confidence 8888788888888888888888776655555555555554 456666799999999999999988888888888999999
Q ss_pred ecCCCCeEEEEcCC
Q 018242 345 GSVNMPYAGLYNYS 358 (359)
Q Consensus 345 g~~~~~~l~~~~~~ 358 (359)
|+..+++|.++++.
T Consensus 363 GS~~~p~i~~lkl~ 376 (376)
T KOG1520|consen 363 GSLFNPYIARLKLP 376 (376)
T ss_pred cccCcceeEEEecC
Confidence 99999999999873
No 2
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=99.96 E-value=1.9e-27 Score=208.70 Aligned_cols=229 Identities=26% Similarity=0.466 Sum_probs=174.5
Q ss_pred CceEEEcc-CCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEEe
Q 018242 36 PESLAFDA-LGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIAD 114 (359)
Q Consensus 36 p~~i~~~~-~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~~ 114 (359)
||++++++ +|.++|++..++.|+++++++++...+. . ..|.|++++..++.+|+++
T Consensus 2 ~Egp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~~~---------------------~--~~~~G~~~~~~~g~l~v~~ 58 (246)
T PF08450_consen 2 GEGPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEVID---------------------L--PGPNGMAFDRPDGRLYVAD 58 (246)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEE---------------------S--SSEEEEEEECTTSEEEEEE
T ss_pred CcceEEECCCCEEEEEEcCCCEEEEEECCCCeEEEEe---------------------c--CCCceEEEEccCCEEEEEE
Confidence 79999998 8998999999999999999987543321 1 1288999994489999998
Q ss_pred CCCcEEEEeCCCCeEEEEeecCCCc-cccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCCcE
Q 018242 115 AYFGLLKVGPEGGLATAVATQSEGI-PFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQV 193 (359)
Q Consensus 115 ~~~~i~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~ 193 (359)
. .++.++|+++++++.+.....+. +...||+++++++|+ +|++++....... ...|.|++++++ ++.
T Consensus 59 ~-~~~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~-ly~t~~~~~~~~~---------~~~g~v~~~~~~-~~~ 126 (246)
T PF08450_consen 59 S-GGIAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGN-LYVTDSGGGGASG---------IDPGSVYRIDPD-GKV 126 (246)
T ss_dssp T-TCEEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS--EEEEEECCBCTTC---------GGSEEEEEEETT-SEE
T ss_pred c-CceEEEecCCCcEEEEeeccCCCcccCCCceEEEcCCCC-EEEEecCCCcccc---------ccccceEEECCC-CeE
Confidence 5 46777799999988776643333 678999999999999 9999876331100 011789999998 788
Q ss_pred EEEeCCCCCCceEEEccCCCEEEEEecCCCEEEEEEcCCCC--CcceeEeecCC---CCCCceEECCCCCEEEEEecCCC
Q 018242 194 TVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSK--AGTIEIVAQLP---GFPDNIKRSPRGGFWVGIHSRRK 268 (359)
Q Consensus 194 ~~~~~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~--~~~~~~~~~~~---~~p~~i~~d~~G~lwv~~~~~~~ 268 (359)
..+...+..||||++++|++.||++++..++|++|+++... ....+.+...+ +.|+|+++|++|+||++.+..+.
T Consensus 127 ~~~~~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~ 206 (246)
T PF08450_consen 127 TVVADGLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGR 206 (246)
T ss_dssp EEEEEEESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTE
T ss_pred EEEecCcccccceEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCE
Confidence 77777788999999999999999999999999999997432 34455555432 35999999999999999997665
Q ss_pred ccccccccCCccceeeecCCccceeeeeecccccCc
Q 018242 269 GISKLVLSFPWIGNVLIKLPIDIVKIHSSLVKLSGN 304 (359)
Q Consensus 269 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 304 (359)
+.+++++|+++..+++|.+.+++|++++...
T Consensus 207 -----I~~~~p~G~~~~~i~~p~~~~t~~~fgg~~~ 237 (246)
T PF08450_consen 207 -----IVVFDPDGKLLREIELPVPRPTNCAFGGPDG 237 (246)
T ss_dssp -----EEEEETTSCEEEEEE-SSSSEEEEEEESTTS
T ss_pred -----EEEECCCccEEEEEcCCCCCEEEEEEECCCC
Confidence 6777777777777777766777777765443
No 3
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=99.95 E-value=6.8e-25 Score=194.85 Aligned_cols=243 Identities=24% Similarity=0.335 Sum_probs=181.5
Q ss_pred EEeeCCCCCCceEEEccCCC-eeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEec
Q 018242 27 QYQIEGAIGPESLAFDALGE-GPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNK 105 (359)
Q Consensus 27 ~~~~~~~~~p~~i~~~~~G~-~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~ 105 (359)
.+...+..-.|+..++++.. ++|++..+++|++|++.+++.+.+. .....+.++.+++
T Consensus 18 ~~~~~~~~~gEgP~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~~~~---------------------~p~~~~~~~~~d~ 76 (307)
T COG3386 18 TLLDKGATLGEGPVWDPDRGALLWVDILGGRIHRLDPETGKKRVFP---------------------SPGGFSSGALIDA 76 (307)
T ss_pred eEeecccccccCccCcCCCCEEEEEeCCCCeEEEecCCcCceEEEE---------------------CCCCcccceeecC
Confidence 44455567889999998765 8899999999999999877555553 1222355677777
Q ss_pred CCCeEEEEeCCCcEEEEeCCCCeE-EEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEE
Q 018242 106 TNGDLYIADAYFGLLKVGPEGGLA-TAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLM 184 (359)
Q Consensus 106 ~~g~l~v~~~~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~ 184 (359)
++.|+++. .++.+++++.+.. +.+.....+.+...+|++.++++|+ +|+++++. +. .........|.||
T Consensus 77 -~g~Lv~~~--~g~~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~v~pdG~-~wfgt~~~-~~-----~~~~~~~~~G~ly 146 (307)
T COG3386 77 -GGRLIACE--HGVRLLDPDTGGKITLLAEPEDGLPLNRPNDGVVDPDGR-IWFGDMGY-FD-----LGKSEERPTGSLY 146 (307)
T ss_pred -CCeEEEEc--cccEEEeccCCceeEEeccccCCCCcCCCCceeEcCCCC-EEEeCCCc-cc-----cCccccCCcceEE
Confidence 88888875 4677777676655 5665655666778999999999999 99999883 11 0000123457899
Q ss_pred EEeCCCCcEEEEeCCCCCCceEEEccCCCEEEEEecCCCEEEEEEcCC--CCCcceeEe--ec-CCCCCCceEECCCCCE
Q 018242 185 KYDPATKQVTVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKT--SKAGTIEIV--AQ-LPGFPDNIKRSPRGGF 259 (359)
Q Consensus 185 ~~d~~~~~~~~~~~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~--~~~~~~~~~--~~-~~~~p~~i~~d~~G~l 259 (359)
+++|.+...+.+...+..||||||+||++++|++++..++|++|+++. ........+ .. .++.|+|+++|++|+|
T Consensus 147 r~~p~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~l 226 (307)
T COG3386 147 RVDPDGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNL 226 (307)
T ss_pred EEcCCCCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCE
Confidence 999975555555555889999999999999999999999999999873 112222222 22 4688999999999999
Q ss_pred EEEEecCCCccccccccCCccceeeecCCccceeeeeecccccCc
Q 018242 260 WVGIHSRRKGISKLVLSFPWIGNVLIKLPIDIVKIHSSLVKLSGN 304 (359)
Q Consensus 260 wv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 304 (359)
|++...++.. +.+++++|+++..+.+|...+++|+|++...
T Consensus 227 w~~a~~~g~~----v~~~~pdG~l~~~i~lP~~~~t~~~FgG~~~ 267 (307)
T COG3386 227 WVAAVWGGGR----VVRFNPDGKLLGEIKLPVKRPTNPAFGGPDL 267 (307)
T ss_pred EEecccCCce----EEEECCCCcEEEEEECCCCCCccceEeCCCc
Confidence 9655554322 8889999999999999999999999987654
No 4
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=99.89 E-value=1.2e-20 Score=157.81 Aligned_cols=280 Identities=17% Similarity=0.198 Sum_probs=203.1
Q ss_pred EEEEeeCCCCCCceEEEccCCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEe
Q 018242 25 VVQYQIEGAIGPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFN 104 (359)
Q Consensus 25 ~~~~~~~~~~~p~~i~~~~~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~ 104 (359)
...++++.-..|..++.++||.++|.+...+.|-++||.+++.++++. .....|++|.+.
T Consensus 53 ~~~fpvp~G~ap~dvapapdG~VWft~qg~gaiGhLdP~tGev~~ypL--------------------g~Ga~Phgiv~g 112 (353)
T COG4257 53 SAEFPVPNGSAPFDVAPAPDGAVWFTAQGTGAIGHLDPATGEVETYPL--------------------GSGASPHGIVVG 112 (353)
T ss_pred cceeccCCCCCccccccCCCCceEEecCccccceecCCCCCceEEEec--------------------CCCCCCceEEEC
Confidence 457888888999999999999988899999999999999998877641 233569999999
Q ss_pred cCCCeEEEEeCCCcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEE
Q 018242 105 KTNGDLYIADAYFGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLM 184 (359)
Q Consensus 105 ~~~g~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~ 184 (359)
+ +|..|+++....|.|+++++.+++.+.-. ........+..++|++|+ ||++... |---
T Consensus 113 p-dg~~Witd~~~aI~R~dpkt~evt~f~lp-~~~a~~nlet~vfD~~G~-lWFt~q~------------------G~yG 171 (353)
T COG4257 113 P-DGSAWITDTGLAIGRLDPKTLEVTRFPLP-LEHADANLETAVFDPWGN-LWFTGQI------------------GAYG 171 (353)
T ss_pred C-CCCeeEecCcceeEEecCcccceEEeecc-cccCCCcccceeeCCCcc-EEEeecc------------------ccce
Confidence 9 99999999877999999999988876432 122334677899999999 9999432 2233
Q ss_pred EEeCCCCcEEEEe-CCCCCCceEEEccCCCEEEEEecCCCEEEEEEcCCCCCcceeEeec---CCCCCCceEECCCCCEE
Q 018242 185 KYDPATKQVTVLL-GNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQ---LPGFPDNIKRSPRGGFW 260 (359)
Q Consensus 185 ~~d~~~~~~~~~~-~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~---~~~~p~~i~~d~~G~lw 260 (359)
+.||.++.++.+. .-...|+||+.+|||. +|+++...+.|.++|.... ..+++.. +....+.+-.|+.|++|
T Consensus 172 rLdPa~~~i~vfpaPqG~gpyGi~atpdGs-vwyaslagnaiaridp~~~---~aev~p~P~~~~~gsRriwsdpig~~w 247 (353)
T COG4257 172 RLDPARNVISVFPAPQGGGPYGICATPDGS-VWYASLAGNAIARIDPFAG---HAEVVPQPNALKAGSRRIWSDPIGRAW 247 (353)
T ss_pred ecCcccCceeeeccCCCCCCcceEECCCCc-EEEEeccccceEEcccccC---CcceecCCCcccccccccccCccCcEE
Confidence 7888887777664 2346799999999998 8999888899999985432 2333322 22234567889999999
Q ss_pred EEEecCCCccccccccCCccceeeecCCccce--eeeeecccccC-------cceEEEEECCCCCEEEEEEccCCceeec
Q 018242 261 VGIHSRRKGISKLVLSFPWIGNVLIKLPIDIV--KIHSSLVKLSG-------NGGMAMRISEQGNVLEILEEIGRKMWRS 331 (359)
Q Consensus 261 v~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~--~~~~~~~~~~~-------~~~~~~~~~~~g~~~~~~~~~~g~~~~~ 331 (359)
+++++.+. +..|++.-+.-...++|.. .+.+..++... ..+.+.+||++...+.+|..+.- +..
T Consensus 248 ittwg~g~-----l~rfdPs~~sW~eypLPgs~arpys~rVD~~grVW~sea~agai~rfdpeta~ftv~p~pr~--n~g 320 (353)
T COG4257 248 ITTWGTGS-----LHRFDPSVTSWIEYPLPGSKARPYSMRVDRHGRVWLSEADAGAIGRFDPETARFTVLPIPRP--NSG 320 (353)
T ss_pred EeccCCce-----eeEeCcccccceeeeCCCCCCCcceeeeccCCcEEeeccccCceeecCcccceEEEecCCCC--CCC
Confidence 99999887 7788776555445555433 23333333111 12678899999888888764332 222
Q ss_pred eEEEEEeCCEEEEecCCCCeEEEEc
Q 018242 332 ISEVEEKDGNLWIGSVNMPYAGLYN 356 (359)
Q Consensus 332 ~~~~~~~~g~l~ig~~~~~~l~~~~ 356 (359)
...+....|++|++.-.-+.+.+++
T Consensus 321 n~ql~gr~ge~W~~e~gvd~lv~~r 345 (353)
T COG4257 321 NIQLDGRPGELWFTEAGVDALVTTR 345 (353)
T ss_pred ceeccCCCCceeecccCcceeEEEE
Confidence 2233445899999987777777665
No 5
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.81 E-value=1.5e-16 Score=163.97 Aligned_cols=276 Identities=18% Similarity=0.242 Sum_probs=173.5
Q ss_pred eCCCCCCceEEEccC-CCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCC
Q 018242 30 IEGAIGPESLAFDAL-GEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNG 108 (359)
Q Consensus 30 ~~~~~~p~~i~~~~~-G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g 108 (359)
..++..|.+++++++ |+++++++.+++|.++|+++.....+...... +...++. .....+.|+||+++++++
T Consensus 564 ~s~l~~P~gvavd~~~g~lyVaDs~n~rI~v~d~~G~~i~~ig~~g~~-G~~dG~~------~~a~f~~P~GIavd~~gn 636 (1057)
T PLN02919 564 TSPLKFPGKLAIDLLNNRLFISDSNHNRIVVTDLDGNFIVQIGSTGEE-GLRDGSF------EDATFNRPQGLAYNAKKN 636 (1057)
T ss_pred cccCCCCceEEEECCCCeEEEEECCCCeEEEEeCCCCEEEEEccCCCc-CCCCCch------hccccCCCcEEEEeCCCC
Confidence 345789999999975 66556678889999999986533333211100 0001110 012345699999999667
Q ss_pred eEEEEeCCC-cEEEEeCCCCeEEEEeecC------CC------ccccccceEEEeCCCCEEEEEeCCCccccccceeeee
Q 018242 109 DLYIADAYF-GLLKVGPEGGLATAVATQS------EG------IPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVIL 175 (359)
Q Consensus 109 ~l~v~~~~~-~i~~~~~~~~~~~~~~~~~------~~------~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~ 175 (359)
.|||++..+ .|.++|..++.++.+.... .+ ..+..|.+++++++++.+||++.+
T Consensus 637 ~LYVaDt~n~~Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~------------- 703 (1057)
T PLN02919 637 LLYVADTENHALREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAG------------- 703 (1057)
T ss_pred EEEEEeCCCceEEEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECC-------------
Confidence 799998754 5888999988887664321 00 124678999999944349999765
Q ss_pred ecCCCceEEEEeCCCCcEEEEeC---------------CCCCCceEEEccCCCEEEEEecCCCEEEEEEcCCCCCccee-
Q 018242 176 SGDKTGRLMKYDPATKQVTVLLG---------------NLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIE- 239 (359)
Q Consensus 176 ~~~~~g~v~~~d~~~~~~~~~~~---------------~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~- 239 (359)
.+.|+++|+.++.+..+.. .+..|.||++++|++.||+++..+++|.+|+++........
T Consensus 704 ----~~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~g 779 (1057)
T PLN02919 704 ----QHQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAG 779 (1057)
T ss_pred ----CCeEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEe
Confidence 3468888877665543321 23568999999999999999999999999998643211000
Q ss_pred ----------Eeec--------CCCCCCceEECCCCCEEEEEecCCCccccccccCCccceeeecCCccceeeeeecccc
Q 018242 240 ----------IVAQ--------LPGFPDNIKRSPRGGFWVGIHSRRKGISKLVLSFPWIGNVLIKLPIDIVKIHSSLVKL 301 (359)
Q Consensus 240 ----------~~~~--------~~~~p~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 301 (359)
.+.. .-..|.++++|++|++||+...++. +.+++..+..+..+...
T Consensus 780 g~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~r-----IrviD~~tg~v~tiaG~----------- 843 (1057)
T PLN02919 780 GDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHK-----IKKLDPATKRVTTLAGT----------- 843 (1057)
T ss_pred cccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCE-----EEEEECCCCeEEEEecc-----------
Confidence 0000 0124889999999999999987664 55554432222111000
Q ss_pred cCcceEEEEECCCCCEEEEEEccCCceeeceEEEEEe-CCEEEEecCCCCeEEEEcCC
Q 018242 302 SGNGGMAMRISEQGNVLEILEEIGRKMWRSISEVEEK-DGNLWIGSVNMPYAGLYNYS 358 (359)
Q Consensus 302 ~~~~~~~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~-~g~l~ig~~~~~~l~~~~~~ 358 (359)
... + + .+|.... .....+.++..+ +|+|||++..++.|.+++++
T Consensus 844 G~~-G----~-~dG~~~~-------a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~ 888 (1057)
T PLN02919 844 GKA-G----F-KDGKALK-------AQLSEPAGLALGENGRLFVADTNNSLIRYLDLN 888 (1057)
T ss_pred CCc-C----C-CCCcccc-------cccCCceEEEEeCCCCEEEEECCCCEEEEEECC
Confidence 000 0 0 1121110 012344555544 78999999999999998875
No 6
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=99.73 E-value=6.8e-16 Score=126.73 Aligned_cols=232 Identities=13% Similarity=0.130 Sum_probs=150.7
Q ss_pred ceEEEcc-CCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecC-CCeEEEEe
Q 018242 37 ESLAFDA-LGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKT-NGDLYIAD 114 (359)
Q Consensus 37 ~~i~~~~-~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~-~g~l~v~~ 114 (359)
|++.++. .+.+||++...+.|++||..++......... .. ..|+.+--. +-..++..
T Consensus 18 Egp~w~~~~~sLl~VDi~ag~v~r~D~~qn~v~ra~ie~-------------------p~--~ag~ilpv~~~~q~~~v~ 76 (310)
T KOG4499|consen 18 EGPHWDVERQSLLYVDIEAGEVHRYDIEQNKVYRAKIEG-------------------PP--SAGFILPVEGGPQEFAVG 76 (310)
T ss_pred CCCceEEecceEEEEEeccCceehhhhhhhheEEEEEec-------------------Cc--ceeEEEEecCCCceEEEe
Confidence 4555553 4678999999999999999887655432110 00 122222210 11223222
Q ss_pred CCC--cEEEEeCCCCeEEEEee---cCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCC
Q 018242 115 AYF--GLLKVGPEGGLATAVAT---QSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPA 189 (359)
Q Consensus 115 ~~~--~i~~~~~~~~~~~~~~~---~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~ 189 (359)
-+. +|..+|-.......+.+ ..+.......|+-.+||+|+ .|.+.+...-. .+ ....+.++.+-+.
T Consensus 77 ~G~kf~i~nwd~~~~~a~v~~t~~ev~~d~kknR~NDgkvdP~Gr-yy~GtMad~~~----~l----e~~~g~Ly~~~~~ 147 (310)
T KOG4499|consen 77 CGSKFVIVNWDGVSESAKVYRTLFEVQPDRKKNRLNDGKVDPDGR-YYGGTMADFGD----DL----EPIGGELYSWLAG 147 (310)
T ss_pred ecceEEEEEcccccceeeeeeeccccCchHHhcccccCccCCCCc-eeeeeeccccc----cc----cccccEEEEeccC
Confidence 222 23334322222222211 22233456778889999999 78886642110 00 0123456666654
Q ss_pred CCcEEEEeCCCCCCceEEEccCCCEEEEEecCCCEEEEEE--cCCCCCcceeEeecC-------CCCCCceEECCCCCEE
Q 018242 190 TKQVTVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYW--LKTSKAGTIEIVAQL-------PGFPDNIKRSPRGGFW 260 (359)
Q Consensus 190 ~~~~~~~~~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~--~~~~~~~~~~~~~~~-------~~~p~~i~~d~~G~lw 260 (359)
++++.+.....-+||++++.|.+..|+.++.+..|..|| ..++.++.++.+.++ +-.|+||++|.+|+||
T Consensus 148 -h~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~ 226 (310)
T KOG4499|consen 148 -HQVELIWNCVGISNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLY 226 (310)
T ss_pred -CCceeeehhccCCccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEE
Confidence 678878777888999999999999999999999996665 555555555554431 2469999999999999
Q ss_pred EEEecCCCccccccccCC-ccceeeecCCccceeeeeecccccCc
Q 018242 261 VGIHSRRKGISKLVLSFP-WIGNVLIKLPIDIVKIHSSLVKLSGN 304 (359)
Q Consensus 261 v~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~ 304 (359)
|+++.++. +..++ .+||++..+.+|...+++|||++...
T Consensus 227 Va~~ng~~-----V~~~dp~tGK~L~eiklPt~qitsccFgGkn~ 266 (310)
T KOG4499|consen 227 VATFNGGT-----VQKVDPTTGKILLEIKLPTPQITSCCFGGKNL 266 (310)
T ss_pred EEEecCcE-----EEEECCCCCcEEEEEEcCCCceEEEEecCCCc
Confidence 99999887 55554 58999999999999999999998754
No 7
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.72 E-value=1.9e-14 Score=132.33 Aligned_cols=203 Identities=18% Similarity=0.209 Sum_probs=131.5
Q ss_pred CCCCCceEEEccCCCeeEEecC----CCEEEEEEc--CCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEec
Q 018242 32 GAIGPESLAFDALGEGPYTGVS----DGRIIKWHQ--DQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNK 105 (359)
Q Consensus 32 ~~~~p~~i~~~~~G~~l~~~~~----~~~i~~~d~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~ 105 (359)
....|..+++++++++||+... .+.|..|.. ++++++.+. ........|..+++++
T Consensus 35 ~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~------------------~~~~~g~~p~~i~~~~ 96 (345)
T PF10282_consen 35 EGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLN------------------SVPSGGSSPCHIAVDP 96 (345)
T ss_dssp ESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEE------------------EEEESSSCEEEEEECT
T ss_pred CCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEee------------------eeccCCCCcEEEEEec
Confidence 4579999999999999998876 367766654 434555443 2222446688999999
Q ss_pred CCCeEEEEeCCCc-EEEEeCCC-CeEEEEeec---------CCCccccccceEEEeCCCCEEEEEeCCCccccccceeee
Q 018242 106 TNGDLYIADAYFG-LLKVGPEG-GLATAVATQ---------SEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVI 174 (359)
Q Consensus 106 ~~g~l~v~~~~~~-i~~~~~~~-~~~~~~~~~---------~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~ 174 (359)
++..||+++...+ +..++.+. +........ ...+....|+.+.++|+|+++|++|.+.+
T Consensus 97 ~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D---------- 166 (345)
T PF10282_consen 97 DGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGAD---------- 166 (345)
T ss_dssp TSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTT----------
T ss_pred CCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCC----------
Confidence 8888999987654 65665543 444332110 01123457899999999999999987743
Q ss_pred eecCCCceEEEEeCCCCcEEE----EeCCCCCCceEEEccCCCEEEEEecCCCEEEEEEcCCC--CCcceeEeecCC---
Q 018242 175 LSGDKTGRLMKYDPATKQVTV----LLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTS--KAGTIEIVAQLP--- 245 (359)
Q Consensus 175 ~~~~~~g~v~~~d~~~~~~~~----~~~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~--~~~~~~~~~~~~--- 245 (359)
.-.++.++..++++.. .......|+.++|+||++++|+.+..++.|.+|+++.. .....+....++
T Consensus 167 -----~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~ 241 (345)
T PF10282_consen 167 -----RVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGF 241 (345)
T ss_dssp -----EEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTS
T ss_pred -----EEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccc
Confidence 1234445544433533 23456789999999999999999999999999998732 222222222221
Q ss_pred ---CCCCceEECCCCC-EEEEEecCC
Q 018242 246 ---GFPDNIKRSPRGG-FWVGIHSRR 267 (359)
Q Consensus 246 ---~~p~~i~~d~~G~-lwv~~~~~~ 267 (359)
..+.+|+++++|+ ||++..+..
T Consensus 242 ~~~~~~~~i~ispdg~~lyvsnr~~~ 267 (345)
T PF10282_consen 242 TGENAPAEIAISPDGRFLYVSNRGSN 267 (345)
T ss_dssp CSSSSEEEEEE-TTSSEEEEEECTTT
T ss_pred cccCCceeEEEecCCCEEEEEeccCC
Confidence 1356799999997 788777644
No 8
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=99.71 E-value=3.5e-15 Score=125.40 Aligned_cols=223 Identities=11% Similarity=0.112 Sum_probs=163.4
Q ss_pred CCCEEEEeeCCCCCCceEEEccCCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEE
Q 018242 22 TQGVVQYQIEGAIGPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGL 101 (359)
Q Consensus 22 ~~~~~~~~~~~~~~p~~i~~~~~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi 101 (359)
..++.+++++.-.+|++|.+.+||. .|++.....|.++|+++.++++|..+.++ ...+....
T Consensus 92 tGev~~ypLg~Ga~Phgiv~gpdg~-~Witd~~~aI~R~dpkt~evt~f~lp~~~-----------------a~~nlet~ 153 (353)
T COG4257 92 TGEVETYPLGSGASPHGIVVGPDGS-AWITDTGLAIGRLDPKTLEVTRFPLPLEH-----------------ADANLETA 153 (353)
T ss_pred CCceEEEecCCCCCCceEEECCCCC-eeEecCcceeEEecCcccceEEeeccccc-----------------CCCcccce
Confidence 3446799999999999999999999 66655545899999999999998754322 22223456
Q ss_pred EEecCCCeEEEEeCCCcE-EEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCC
Q 018242 102 CFNKTNGDLYIADAYFGL-LKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKT 180 (359)
Q Consensus 102 ~~~~~~g~l~v~~~~~~i-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~ 180 (359)
.||+ +|+||++.. .|+ -|+|+..+.++.+... ....|++|++.|||. +|++... .
T Consensus 154 vfD~-~G~lWFt~q-~G~yGrLdPa~~~i~vfpaP----qG~gpyGi~atpdGs-vwyasla-----------------g 209 (353)
T COG4257 154 VFDP-WGNLWFTGQ-IGAYGRLDPARNVISVFPAP----QGGGPYGICATPDGS-VWYASLA-----------------G 209 (353)
T ss_pred eeCC-CccEEEeec-cccceecCcccCceeeeccC----CCCCCcceEECCCCc-EEEEecc-----------------c
Confidence 7898 999999864 443 4899988877654322 335789999999999 9999432 2
Q ss_pred ceEEEEeCCCCcEEEEeCC---CCCCceEEEccCCCEEEEEecCCCEEEEEEcCCCCCcceeEeec--CCCCCCceEECC
Q 018242 181 GRLMKYDPATKQVTVLLGN---LSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQ--LPGFPDNIKRSP 255 (359)
Q Consensus 181 g~v~~~d~~~~~~~~~~~~---~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~--~~~~p~~i~~d~ 255 (359)
..|.++|+.++..+.+... ......|.-++.++ +|++...++++++||.... .-..+.- ....|+.|.+|.
T Consensus 210 naiaridp~~~~aev~p~P~~~~~gsRriwsdpig~-~wittwg~g~l~rfdPs~~---sW~eypLPgs~arpys~rVD~ 285 (353)
T COG4257 210 NAIARIDPFAGHAEVVPQPNALKAGSRRIWSDPIGR-AWITTWGTGSLHRFDPSVT---SWIEYPLPGSKARPYSMRVDR 285 (353)
T ss_pred cceEEcccccCCcceecCCCcccccccccccCccCc-EEEeccCCceeeEeCcccc---cceeeeCCCCCCCcceeeecc
Confidence 3588999988766554322 12345667778876 8999999999999985432 2222221 234688899999
Q ss_pred CCCEEEEEecCCCccccccccCCccceeeecCCccceeee
Q 018242 256 RGGFWVGIHSRRKGISKLVLSFPWIGNVLIKLPIDIVKIH 295 (359)
Q Consensus 256 ~G~lwv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 295 (359)
.|++|......+. +..|++....+..++.+.++..
T Consensus 286 ~grVW~sea~aga-----i~rfdpeta~ftv~p~pr~n~g 320 (353)
T COG4257 286 HGRVWLSEADAGA-----IGRFDPETARFTVLPIPRPNSG 320 (353)
T ss_pred CCcEEeeccccCc-----eeecCcccceEEEecCCCCCCC
Confidence 9999999988776 8889988888888888765543
No 9
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.66 E-value=4.4e-13 Score=122.81 Aligned_cols=195 Identities=15% Similarity=0.212 Sum_probs=123.9
Q ss_pred CCCceEEEccCCCeeEEec-CCCEEEEEEcC-CcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEE
Q 018242 34 IGPESLAFDALGEGPYTGV-SDGRIIKWHQD-QRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLY 111 (359)
Q Consensus 34 ~~p~~i~~~~~G~~l~~~~-~~~~i~~~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~ 111 (359)
..|..++++|+|+.+|++. ..++|..|+.+ ++++.... .. .....|.++++++++..+|
T Consensus 35 ~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~------------------~~-~~~~~p~~i~~~~~g~~l~ 95 (330)
T PRK11028 35 GQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAA------------------ES-PLPGSPTHISTDHQGRFLF 95 (330)
T ss_pred CCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEee------------------ee-cCCCCceEEEECCCCCEEE
Confidence 4799999999999888865 45788878765 33333221 11 1224588999999667788
Q ss_pred EEeCCC-cEEEEeCCC-CeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCC
Q 018242 112 IADAYF-GLLKVGPEG-GLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPA 189 (359)
Q Consensus 112 v~~~~~-~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~ 189 (359)
++.... .|..++.++ +.......... ....|+.++++|+|+++|+++.+ .+.|..||.+
T Consensus 96 v~~~~~~~v~v~~~~~~g~~~~~~~~~~--~~~~~~~~~~~p~g~~l~v~~~~-----------------~~~v~v~d~~ 156 (330)
T PRK11028 96 SASYNANCVSVSPLDKDGIPVAPIQIIE--GLEGCHSANIDPDNRTLWVPCLK-----------------EDRIRLFTLS 156 (330)
T ss_pred EEEcCCCeEEEEEECCCCCCCCceeecc--CCCcccEeEeCCCCCEEEEeeCC-----------------CCEEEEEEEC
Confidence 887543 477776653 22111111111 12357889999999989998654 3456667665
Q ss_pred C-CcEEE------EeCCCCCCceEEEccCCCEEEEEecCCCEEEEEEcCCCCCcceeEeec---CC------CCCCceEE
Q 018242 190 T-KQVTV------LLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQ---LP------GFPDNIKR 253 (359)
Q Consensus 190 ~-~~~~~------~~~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~---~~------~~p~~i~~ 253 (359)
+ +.+.. .......|++++|+||++++|+++...+.|..|+++... +..+.... .+ ..+.++.+
T Consensus 157 ~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~-~~~~~~~~~~~~p~~~~~~~~~~~i~~ 235 (330)
T PRK11028 157 DDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPH-GEIECVQTLDMMPADFSDTRWAADIHI 235 (330)
T ss_pred CCCcccccCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCC-CCEEEEEEEecCCCcCCCCccceeEEE
Confidence 4 33321 112346789999999999999999989999999987421 12222211 11 12335889
Q ss_pred CCCCC-EEEEEecCC
Q 018242 254 SPRGG-FWVGIHSRR 267 (359)
Q Consensus 254 d~~G~-lwv~~~~~~ 267 (359)
+++|+ +|++....+
T Consensus 236 ~pdg~~lyv~~~~~~ 250 (330)
T PRK11028 236 TPDGRHLYACDRTAS 250 (330)
T ss_pred CCCCCEEEEecCCCC
Confidence 99997 777654433
No 10
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.66 E-value=5e-14 Score=145.41 Aligned_cols=220 Identities=17% Similarity=0.228 Sum_probs=148.4
Q ss_pred CCCCceEEEccCCCeeEE-ecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEE
Q 018242 33 AIGPESLAFDALGEGPYT-GVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLY 111 (359)
Q Consensus 33 ~~~p~~i~~~~~G~~l~~-~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~ 111 (359)
+..|.+|+++++|+.+|+ +..++.|.++|+.++..+++......... ...+. .........|.+++++++++.+|
T Consensus 623 f~~P~GIavd~~gn~LYVaDt~n~~Ir~id~~~~~V~tlag~G~~g~~--~~gg~--~~~~~~ln~P~gVa~dp~~g~Ly 698 (1057)
T PLN02919 623 FNRPQGLAYNAKKNLLYVADTENHALREIDFVNETVRTLAGNGTKGSD--YQGGK--KGTSQVLNSPWDVCFEPVNEKVY 698 (1057)
T ss_pred cCCCcEEEEeCCCCEEEEEeCCCceEEEEecCCCEEEEEeccCcccCC--CCCCh--hhhHhhcCCCeEEEEecCCCeEE
Confidence 568999999998775555 66778999999988777776532111000 00000 00011235689999999889999
Q ss_pred EEeCC-CcEEEEeCCCCeEEEEeecC-----C-----CccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCC
Q 018242 112 IADAY-FGLLKVGPEGGLATAVATQS-----E-----GIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKT 180 (359)
Q Consensus 112 v~~~~-~~i~~~~~~~~~~~~~~~~~-----~-----~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~ 180 (359)
|++.. +.|.+++..++.+..+.... . ...+..|++|+++++|++|||+|.. .
T Consensus 699 Vad~~~~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~-----------------n 761 (1057)
T PLN02919 699 IAMAGQHQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSE-----------------S 761 (1057)
T ss_pred EEECCCCeEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECC-----------------C
Confidence 99865 46999999888765443210 0 1124578999999999889999765 3
Q ss_pred ceEEEEeCCCCcEEEEeC----------------------CCCCCceEEEccCCCEEEEEecCCCEEEEEEcCCCCCcce
Q 018242 181 GRLMKYDPATKQVTVLLG----------------------NLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTI 238 (359)
Q Consensus 181 g~v~~~d~~~~~~~~~~~----------------------~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~ 238 (359)
+.|.++|++++....+.. .+..|.+++++++|+ +||++..+++|.+|+.++......
T Consensus 762 ~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~-LYVADs~N~rIrviD~~tg~v~ti 840 (1057)
T PLN02919 762 SSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQ-IYVADSYNHKIKKLDPATKRVTTL 840 (1057)
T ss_pred CeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCc-EEEEECCCCEEEEEECCCCeEEEE
Confidence 478888887655432211 124689999999997 899999999999999765422111
Q ss_pred eE-----ee------cCCCCCCceEECCCCCEEEEEecCCCccccccccCCc
Q 018242 239 EI-----VA------QLPGFPDNIKRSPRGGFWVGIHSRRKGISKLVLSFPW 279 (359)
Q Consensus 239 ~~-----~~------~~~~~p~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~ 279 (359)
.. +. ..-..|.+|++|++|++||+...++. +.+++.
T Consensus 841 aG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~-----Irvid~ 887 (1057)
T PLN02919 841 AGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSL-----IRYLDL 887 (1057)
T ss_pred eccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCE-----EEEEEC
Confidence 00 00 00125899999999999999987775 555554
No 11
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.60 E-value=9.7e-12 Score=108.66 Aligned_cols=252 Identities=15% Similarity=0.193 Sum_probs=152.4
Q ss_pred CCCCCCceEEEccCCCeeEEecCC---CEE--EEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEec
Q 018242 31 EGAIGPESLAFDALGEGPYTGVSD---GRI--IKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNK 105 (359)
Q Consensus 31 ~~~~~p~~i~~~~~G~~l~~~~~~---~~i--~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~ 105 (359)
.....|.-|+++++++.||+.... ++| +.+|++.++++.+. ........|..+++|+
T Consensus 37 ~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln------------------~~~~~g~~p~yvsvd~ 98 (346)
T COG2706 37 AELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLN------------------RQTLPGSPPCYVSVDE 98 (346)
T ss_pred cccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEee------------------ccccCCCCCeEEEECC
Confidence 345699999999999889987654 555 56666656555542 1122223458899999
Q ss_pred CCCeEEEEeCCCc-EEEEeCCC-CeEEEE----eecCC----CccccccceEEEeCCCCEEEEEeCCCccccccceeeee
Q 018242 106 TNGDLYIADAYFG-LLKVGPEG-GLATAV----ATQSE----GIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVIL 175 (359)
Q Consensus 106 ~~g~l~v~~~~~~-i~~~~~~~-~~~~~~----~~~~~----~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~ 175 (359)
++..+|+++...+ |.++-... |.+... ..... .+....++...++|+|++|++.|.+.+
T Consensus 99 ~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~D----------- 167 (346)
T COG2706 99 DGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTD----------- 167 (346)
T ss_pred CCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCc-----------
Confidence 6667888887655 44443321 433221 11111 112234677889999998999988754
Q ss_pred ecCCCceEEEEeCCCCcEEEE----eCCCCCCceEEEccCCCEEEEEecCCCEEEEEEcCCCCCcceeEeecCCCCCC--
Q 018242 176 SGDKTGRLMKYDPATKQVTVL----LGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPD-- 249 (359)
Q Consensus 176 ~~~~~g~v~~~d~~~~~~~~~----~~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~-- 249 (359)
+|+.|+.+.+.+... .....+|+.|+|.|+++..|+...-+++|.+|..++. .++++.+.....+|.
T Consensus 168 ------ri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~-~g~~~~lQ~i~tlP~dF 240 (346)
T COG2706 168 ------RIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPA-VGKFEELQTIDTLPEDF 240 (346)
T ss_pred ------eEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCC-CceEEEeeeeccCcccc
Confidence 677777666666543 2456789999999999999999999999999988754 333443332222222
Q ss_pred -------ceEECCCCCEEEEEecCCCccccccccCCcc-cee--eecCCccceeeeeecccccCcceEEEEECCCCCEEE
Q 018242 250 -------NIKRSPRGGFWVGIHSRRKGISKLVLSFPWI-GNV--LIKLPIDIVKIHSSLVKLSGNGGMAMRISEQGNVLE 319 (359)
Q Consensus 250 -------~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~-g~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 319 (359)
.|.++++|+...++..+..+|+ +...++. |++ +...++..+.|....+.... ..+++.++++..+.
T Consensus 241 ~g~~~~aaIhis~dGrFLYasNRg~dsI~--~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g--~~Liaa~q~sd~i~ 316 (346)
T COG2706 241 TGTNWAAAIHISPDGRFLYASNRGHDSIA--VFSVDPDGGKLELVGITPTEGQFPRDFNINPSG--RFLIAANQKSDNIT 316 (346)
T ss_pred CCCCceeEEEECCCCCEEEEecCCCCeEE--EEEEcCCCCEEEEEEEeccCCcCCccceeCCCC--CEEEEEccCCCcEE
Confidence 2888999985444545554433 2222343 432 33444444434333333322 35555565555555
Q ss_pred EEE
Q 018242 320 ILE 322 (359)
Q Consensus 320 ~~~ 322 (359)
.|.
T Consensus 317 vf~ 319 (346)
T COG2706 317 VFE 319 (346)
T ss_pred EEE
Confidence 554
No 12
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=99.57 E-value=8.4e-13 Score=115.78 Aligned_cols=184 Identities=25% Similarity=0.421 Sum_probs=126.5
Q ss_pred CCceEEEc-cCCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEE
Q 018242 35 GPESLAFD-ALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIA 113 (359)
Q Consensus 35 ~p~~i~~~-~~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~ 113 (359)
.|.+++++ ++|+ +|++... ++..+|+.+++++.+.... .-......|+.+++++ +|++|++
T Consensus 41 ~~~G~~~~~~~g~-l~v~~~~-~~~~~d~~~g~~~~~~~~~---------------~~~~~~~~~ND~~vd~-~G~ly~t 102 (246)
T PF08450_consen 41 GPNGMAFDRPDGR-LYVADSG-GIAVVDPDTGKVTVLADLP---------------DGGVPFNRPNDVAVDP-DGNLYVT 102 (246)
T ss_dssp SEEEEEEECTTSE-EEEEETT-CEEEEETTTTEEEEEEEEE---------------TTCSCTEEEEEEEE-T-TS-EEEE
T ss_pred CCceEEEEccCCE-EEEEEcC-ceEEEecCCCcEEEEeecc---------------CCCcccCCCceEEEcC-CCCEEEE
Confidence 39999999 6777 7877774 4666699988777664221 0011335688999999 8999999
Q ss_pred eCC---------CcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEE
Q 018242 114 DAY---------FGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLM 184 (359)
Q Consensus 114 ~~~---------~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~ 184 (359)
+.. ++|++++++ ++++.+.. .+..||+|+++++|++||++++. .+.|+
T Consensus 103 ~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~-----~~~~pNGi~~s~dg~~lyv~ds~-----------------~~~i~ 159 (246)
T PF08450_consen 103 DSGGGGASGIDPGSVYRIDPD-GKVTVVAD-----GLGFPNGIAFSPDGKTLYVADSF-----------------NGRIW 159 (246)
T ss_dssp EECCBCTTCGGSEEEEEEETT-SEEEEEEE-----EESSEEEEEEETTSSEEEEEETT-----------------TTEEE
T ss_pred ecCCCccccccccceEEECCC-CeEEEEec-----CcccccceEECCcchheeecccc-----------------cceeE
Confidence 753 238999998 77665544 35689999999999989999764 45788
Q ss_pred EEeCC--CCcEE---EEe--CCC-CCCceEEEccCCCEEEEEecCCCEEEEEEcCCCCCcceeEeecCC-CCCCceEEC-
Q 018242 185 KYDPA--TKQVT---VLL--GNL-SFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLP-GFPDNIKRS- 254 (359)
Q Consensus 185 ~~d~~--~~~~~---~~~--~~~-~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~-~~p~~i~~d- 254 (359)
+++.+ +..+. .+. ... ..|.|++++.+|+ ||++....++|.+++.++. ......++ ..|.++++.
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~-l~va~~~~~~I~~~~p~G~----~~~~i~~p~~~~t~~~fgg 234 (246)
T PF08450_consen 160 RFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGN-LWVADWGGGRIVVFDPDGK----LLREIELPVPRPTNCAFGG 234 (246)
T ss_dssp EEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS--EEEEEETTTEEEEEETTSC----EEEEEE-SSSSEEEEEEES
T ss_pred EEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCC-EEEEEcCCCEEEEECCCcc----EEEEEcCCCCCEEEEEEEC
Confidence 88874 33121 221 222 2489999999997 8999999999999996532 22223333 468889993
Q ss_pred CC-CCEEEEEe
Q 018242 255 PR-GGFWVGIH 264 (359)
Q Consensus 255 ~~-G~lwv~~~ 264 (359)
++ +.|||++-
T Consensus 235 ~~~~~L~vTta 245 (246)
T PF08450_consen 235 PDGKTLYVTTA 245 (246)
T ss_dssp TTSSEEEEEEB
T ss_pred CCCCEEEEEeC
Confidence 44 46999863
No 13
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.56 E-value=2.1e-12 Score=118.78 Aligned_cols=213 Identities=18% Similarity=0.233 Sum_probs=130.2
Q ss_pred CCCCceEEEccCCCeeEEecC-CCEEEEEEcCC-cceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeE
Q 018242 33 AIGPESLAFDALGEGPYTGVS-DGRIIKWHQDQ-RRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDL 110 (359)
Q Consensus 33 ~~~p~~i~~~~~G~~l~~~~~-~~~i~~~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l 110 (359)
...|..++++++|+.+|++.. .+.+..++.+. +..........+.+. +|. ........|+.+.++|+++.+
T Consensus 86 g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~--g~~-----~~rq~~~h~H~v~~~pdg~~v 158 (345)
T PF10282_consen 86 GSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGS--GPN-----PDRQEGPHPHQVVFSPDGRFV 158 (345)
T ss_dssp SSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEE--ESS-----TTTTSSTCEEEEEE-TTSSEE
T ss_pred CCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCC--CCc-----ccccccccceeEEECCCCCEE
Confidence 478999999999998998875 57887777765 322222110000000 000 001122447899999977789
Q ss_pred EEEeCCC-cEEEEeCCCC--eEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEe
Q 018242 111 YIADAYF-GLLKVGPEGG--LATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYD 187 (359)
Q Consensus 111 ~v~~~~~-~i~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d 187 (359)
|+++.+. .|..|+.+.. +++.... ..-.....|.+++++|+|+++|+.+-. +..-.++.++
T Consensus 159 ~v~dlG~D~v~~~~~~~~~~~l~~~~~-~~~~~G~GPRh~~f~pdg~~~Yv~~e~---------------s~~v~v~~~~ 222 (345)
T PF10282_consen 159 YVPDLGADRVYVYDIDDDTGKLTPVDS-IKVPPGSGPRHLAFSPDGKYAYVVNEL---------------SNTVSVFDYD 222 (345)
T ss_dssp EEEETTTTEEEEEEE-TTS-TEEEEEE-EECSTTSSEEEEEE-TTSSEEEEEETT---------------TTEEEEEEEE
T ss_pred EEEecCCCEEEEEEEeCCCceEEEeec-cccccCCCCcEEEEcCCcCEEEEecCC---------------CCcEEEEeec
Confidence 9988754 5666666543 3543221 111244679999999999999999432 1122355566
Q ss_pred CCCCcEEEEe------CC---CCCCceEEEccCCCEEEEEecCCCEEEEEEcCCC--CCcceeEeecCCCCCCceEECCC
Q 018242 188 PATKQVTVLL------GN---LSFPNGVALSEDGNYILLAETTSCRILRYWLKTS--KAGTIEIVAQLPGFPDNIKRSPR 256 (359)
Q Consensus 188 ~~~~~~~~~~------~~---~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~~p~~i~~d~~ 256 (359)
..++.++.+. .+ ...+.+|+++|||++||+++...+.|..|+++.. .+...+.+......|+++++|++
T Consensus 223 ~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~ 302 (345)
T PF10282_consen 223 PSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPD 302 (345)
T ss_dssp TTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TT
T ss_pred ccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCC
Confidence 4456555432 11 1257899999999999999999999999999543 22222222223456999999999
Q ss_pred CC-EEEEEecCCC
Q 018242 257 GG-FWVGIHSRRK 268 (359)
Q Consensus 257 G~-lwv~~~~~~~ 268 (359)
|+ ||++...++.
T Consensus 303 g~~l~Va~~~s~~ 315 (345)
T PF10282_consen 303 GRYLYVANQDSNT 315 (345)
T ss_dssp SSEEEEEETTTTE
T ss_pred CCEEEEEecCCCe
Confidence 97 7777766543
No 14
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=99.50 E-value=3.3e-11 Score=111.77 Aligned_cols=181 Identities=18% Similarity=0.237 Sum_probs=116.2
Q ss_pred EEEEee-CCCCCCceEEEccCCCeeEEecC------------C-CEEEEEEcCCc--ceEEEeecCCCCCCCCCCccccc
Q 018242 25 VVQYQI-EGAIGPESLAFDALGEGPYTGVS------------D-GRIIKWHQDQR--RWLHFARTSPNRDGCEGAYEYDH 88 (359)
Q Consensus 25 ~~~~~~-~~~~~p~~i~~~~~G~~l~~~~~------------~-~~i~~~d~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 88 (359)
+..+++ +.+..|.+|++|++|+ +|++.. . ++|++++..++ .....
T Consensus 4 ~~l~A~~p~~~~P~~ia~d~~G~-l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~------------------ 64 (367)
T TIGR02604 4 VTLFAAEPLLRNPIAVCFDERGR-LWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKS------------------ 64 (367)
T ss_pred EEEEECCCccCCCceeeECCCCC-EEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCccee------------------
Confidence 344554 4699999999999999 777642 1 37888865322 11000
Q ss_pred ccccccCCcceEEEEecCCCeEEEEeCCCcEEEE-eCCC-----CeEEEEeecCCCc---cccccceEEEeCCCCEEEEE
Q 018242 89 AAKEHICGRPLGLCFNKTNGDLYIADAYFGLLKV-GPEG-----GLATAVATQSEGI---PFRFCNSLDIDQSTGIIYFT 159 (359)
Q Consensus 89 ~~~~~~~~~p~gi~~~~~~g~l~v~~~~~~i~~~-~~~~-----~~~~~~~~~~~~~---~~~~~~~l~~d~~g~~l~v~ 159 (359)
..+......|.||++.+ ++ |||+. ...|+++ +.++ ++.+.+....... ....++++++++||+ ||++
T Consensus 65 ~vfa~~l~~p~Gi~~~~-~G-lyV~~-~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~-LYv~ 140 (367)
T TIGR02604 65 NVFAEELSMVTGLAVAV-GG-VYVAT-PPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGW-LYFN 140 (367)
T ss_pred EEeecCCCCccceeEec-CC-EEEeC-CCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCC-EEEe
Confidence 02223345689999998 77 99986 4468888 4432 1334444433221 245688999999999 9998
Q ss_pred eCCCc--cccccceeeeeecCCCceEEEEeCCCCcEEEEeCCCCCCceEEEccCCCEEEEEecCCCEEEEEE
Q 018242 160 DSSSQ--FQRRNHISVILSGDKTGRLMKYDPATKQVTVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYW 229 (359)
Q Consensus 160 d~~~~--~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~ 229 (359)
+.... +...............+.|+++++++++++.+..+...|+|++++++|+ +|+++.......++.
T Consensus 141 ~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~pdg~~~e~~a~G~rnp~Gl~~d~~G~-l~~tdn~~~~~~~i~ 211 (367)
T TIGR02604 141 HGNTLASKVTRPGTSDESRQGLGGGLFRYNPDGGKLRVVAHGFQNPYGHSVDSWGD-VFFCDNDDPPLCRVT 211 (367)
T ss_pred cccCCCceeccCCCccCcccccCceEEEEecCCCeEEEEecCcCCCccceECCCCC-EEEEccCCCceeEEc
Confidence 76321 1000000000011234689999999988988888889999999999987 788887665555443
No 15
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=99.47 E-value=1.3e-13 Score=98.60 Aligned_cols=87 Identities=59% Similarity=0.990 Sum_probs=71.6
Q ss_pred ceEEEeCC-CCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCCcEEEEeCCCCCCceEEEccCCCEEEEEecCCC
Q 018242 145 NSLDIDQS-TGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQVTVLLGNLSFPNGVALSEDGNYILLAETTSC 223 (359)
Q Consensus 145 ~~l~~d~~-g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~p~gia~~~d~~~l~v~~~~~~ 223 (359)
|++.++++ |. +|++|++..|.++.+...+.++...|.+++|||.+++.+.+..++..|||+++++|+..++++++...
T Consensus 1 ndldv~~~~g~-vYfTdsS~~~~~~~~~~~~le~~~~GRll~ydp~t~~~~vl~~~L~fpNGVals~d~~~vlv~Et~~~ 79 (89)
T PF03088_consen 1 NDLDVDQDTGT-VYFTDSSSRYDRRDWVYDLLEGRPTGRLLRYDPSTKETTVLLDGLYFPNGVALSPDESFVLVAETGRY 79 (89)
T ss_dssp -EEEE-TTT---EEEEES-SS--TTGHHHHHHHT---EEEEEEETTTTEEEEEEEEESSEEEEEE-TTSSEEEEEEGGGT
T ss_pred CceeEecCCCE-EEEEeCccccCccceeeeeecCCCCcCEEEEECCCCeEEEehhCCCccCeEEEcCCCCEEEEEeccCc
Confidence 57899998 77 99999999999988888888889999999999999999999899999999999999999999999999
Q ss_pred EEEEEEcCC
Q 018242 224 RILRYWLKT 232 (359)
Q Consensus 224 ~i~~~~~~~ 232 (359)
+|.+|.+++
T Consensus 80 Ri~rywl~G 88 (89)
T PF03088_consen 80 RILRYWLKG 88 (89)
T ss_dssp EEEEEESSS
T ss_pred eEEEEEEeC
Confidence 999999875
No 16
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.46 E-value=4.7e-11 Score=109.44 Aligned_cols=198 Identities=8% Similarity=0.032 Sum_probs=124.1
Q ss_pred CCCceEEEccCCCeeEEecC-CCEEEEEEcCCcc-eEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEE
Q 018242 34 IGPESLAFDALGEGPYTGVS-DGRIIKWHQDQRR-WLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLY 111 (359)
Q Consensus 34 ~~p~~i~~~~~G~~l~~~~~-~~~i~~~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~ 111 (359)
..|..++++++|+.+|++.. .+.|..|+.++.. ..... ........|++++++++++.+|
T Consensus 80 ~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~------------------~~~~~~~~~~~~~~~p~g~~l~ 141 (330)
T PRK11028 80 GSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPI------------------QIIEGLEGCHSANIDPDNRTLW 141 (330)
T ss_pred CCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCce------------------eeccCCCcccEeEeCCCCCEEE
Confidence 37899999999998888764 5788888876431 10000 0011123478999999667788
Q ss_pred EEeCC-CcEEEEeCCC-CeEEEEe-ecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEE--E
Q 018242 112 IADAY-FGLLKVGPEG-GLATAVA-TQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMK--Y 186 (359)
Q Consensus 112 v~~~~-~~i~~~~~~~-~~~~~~~-~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~--~ 186 (359)
+++.. +.|..++.++ +.+.... ..........|++++++|+|+++|+++.. .+.|.. +
T Consensus 142 v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~-----------------~~~v~v~~~ 204 (330)
T PRK11028 142 VPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNEL-----------------NSSVDVWQL 204 (330)
T ss_pred EeeCCCCEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEecC-----------------CCEEEEEEE
Confidence 88765 4588888765 3322100 00011123468899999999999999543 234544 4
Q ss_pred eCCCCcEEEEeC------C---CCCCceEEEccCCCEEEEEecCCCEEEEEEcCCCCCcceeEeec--CCCCCCceEECC
Q 018242 187 DPATKQVTVLLG------N---LSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQ--LPGFPDNIKRSP 255 (359)
Q Consensus 187 d~~~~~~~~~~~------~---~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~--~~~~p~~i~~d~ 255 (359)
+..+++++.+.. . ...+.+++++||++++|+++...+.|..|+++.... ..+.... ....|.++.+++
T Consensus 205 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~-~~~~~~~~~~~~~p~~~~~~~ 283 (330)
T PRK11028 205 KDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGS-VLSFEGHQPTETQPRGFNIDH 283 (330)
T ss_pred eCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCC-eEEEeEEEeccccCCceEECC
Confidence 433444433211 1 123446899999999999988889999999864321 1122222 234689999999
Q ss_pred CCC-EEEEEecCC
Q 018242 256 RGG-FWVGIHSRR 267 (359)
Q Consensus 256 ~G~-lwv~~~~~~ 267 (359)
+|+ ||++....+
T Consensus 284 dg~~l~va~~~~~ 296 (330)
T PRK11028 284 SGKYLIAAGQKSH 296 (330)
T ss_pred CCCEEEEEEccCC
Confidence 996 777665443
No 17
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.36 E-value=4.8e-09 Score=94.09 Aligned_cols=191 Identities=16% Similarity=0.130 Sum_probs=115.9
Q ss_pred CeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEEeCC-CcEEEEeC
Q 018242 46 EGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIADAY-FGLLKVGP 124 (359)
Q Consensus 46 ~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~~~~-~~i~~~~~ 124 (359)
++++++..++.|..||..+++.... +. ....+.++++++++..+|++... +.|..++.
T Consensus 2 ~~~~s~~~d~~v~~~d~~t~~~~~~--------------------~~-~~~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~ 60 (300)
T TIGR03866 2 KAYVSNEKDNTISVIDTATLEVTRT--------------------FP-VGQRPRGITLSKDGKLLYVCASDSDTIQVIDL 60 (300)
T ss_pred cEEEEecCCCEEEEEECCCCceEEE--------------------EE-CCCCCCceEECCCCCEEEEEECCCCeEEEEEC
Confidence 4345566788999999987643221 11 12346789999955557776543 45888999
Q ss_pred CCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCCcEEEEeCCCCCCc
Q 018242 125 EGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQVTVLLGNLSFPN 204 (359)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~p~ 204 (359)
.+++....... ...+..++++++|+.+|++.. ..+.+..+|.++++..........+.
T Consensus 61 ~~~~~~~~~~~-----~~~~~~~~~~~~g~~l~~~~~-----------------~~~~l~~~d~~~~~~~~~~~~~~~~~ 118 (300)
T TIGR03866 61 ATGEVIGTLPS-----GPDPELFALHPNGKILYIANE-----------------DDNLVTVIDIETRKVLAEIPVGVEPE 118 (300)
T ss_pred CCCcEEEeccC-----CCCccEEEECCCCCEEEEEcC-----------------CCCeEEEEECCCCeEEeEeeCCCCcc
Confidence 88765432221 123557889999997777732 23578889987655433333234578
Q ss_pred eEEEccCCCEEEEEecCCCEEEEEEcCCCCCcceeEeecCCCCCCceEECCCCC-EEEEEecCCCccccccccCC-ccce
Q 018242 205 GVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGG-FWVGIHSRRKGISKLVLSFP-WIGN 282 (359)
Q Consensus 205 gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~-lwv~~~~~~~~~~~~~~~~~-~~g~ 282 (359)
+++++|+++.++++......+..|+..... ..........|..++++++|. +|++....+. +..++ ..++
T Consensus 119 ~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~---~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~-----v~i~d~~~~~ 190 (300)
T TIGR03866 119 GMAVSPDGKIVVNTSETTNMAHFIDTKTYE---IVDNVLVDQRPRFAEFTADGKELWVSSEIGGT-----VSVIDVATRK 190 (300)
T ss_pred eEEECCCCCEEEEEecCCCeEEEEeCCCCe---EEEEEEcCCCccEEEECCCCCEEEEEcCCCCE-----EEEEEcCcce
Confidence 999999999777766555566677754321 111111234577789999997 4455433332 44444 3455
Q ss_pred eeecC
Q 018242 283 VLIKL 287 (359)
Q Consensus 283 ~~~~~ 287 (359)
.+..+
T Consensus 191 ~~~~~ 195 (300)
T TIGR03866 191 VIKKI 195 (300)
T ss_pred eeeee
Confidence 54443
No 18
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.36 E-value=6.9e-10 Score=97.21 Aligned_cols=209 Identities=14% Similarity=0.214 Sum_probs=131.9
Q ss_pred CCCceEEEccCCCeeEEecCC-CEEEEEEcCC-cceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEE
Q 018242 34 IGPESLAFDALGEGPYTGVSD-GRIIKWHQDQ-RRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLY 111 (359)
Q Consensus 34 ~~p~~i~~~~~G~~l~~~~~~-~~i~~~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~ 111 (359)
..|--+++|++|+.++++... +.|.++-.+. +......+...+.+.. + .......-++...++|+++.|+
T Consensus 89 ~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~-----p---~~rQ~~~h~H~a~~tP~~~~l~ 160 (346)
T COG2706 89 SPPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSG-----P---HERQESPHVHSANFTPDGRYLV 160 (346)
T ss_pred CCCeEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCC-----C---CccccCCccceeeeCCCCCEEE
Confidence 467899999999988888766 4444444332 2222111111111100 0 0000001145677899566788
Q ss_pred EEeCC-CcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCC
Q 018242 112 IADAY-FGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPAT 190 (359)
Q Consensus 112 v~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~ 190 (359)
+.+.+ ++|+.|+.+.|+++..... .-.+...|..|+++|+|++.|+.. +.+.+-.|+.+++..
T Consensus 161 v~DLG~Dri~~y~~~dg~L~~~~~~-~v~~G~GPRHi~FHpn~k~aY~v~---------------EL~stV~v~~y~~~~ 224 (346)
T COG2706 161 VPDLGTDRIFLYDLDDGKLTPADPA-EVKPGAGPRHIVFHPNGKYAYLVN---------------ELNSTVDVLEYNPAV 224 (346)
T ss_pred EeecCCceEEEEEcccCcccccccc-ccCCCCCcceEEEcCCCcEEEEEe---------------ccCCEEEEEEEcCCC
Confidence 87764 4688888888876543221 113556899999999999888883 112233477788877
Q ss_pred CcEEEEeC------C---CCCCceEEEccCCCEEEEEecCCCEEEEEEcCCCCCcceeEe--ecCCC-CCCceEECCCCC
Q 018242 191 KQVTVLLG------N---LSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIV--AQLPG-FPDNIKRSPRGG 258 (359)
Q Consensus 191 ~~~~~~~~------~---~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~--~~~~~-~p~~i~~d~~G~ 258 (359)
++++.+.. + ......|.+++||+.||+++...+.|..|.++... +..+.+ ....+ .|++..+++.|+
T Consensus 225 g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~-g~L~~~~~~~teg~~PR~F~i~~~g~ 303 (346)
T COG2706 225 GKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDG-GKLELVGITPTEGQFPRDFNINPSGR 303 (346)
T ss_pred ceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCC-CEEEEEEEeccCCcCCccceeCCCCC
Confidence 77776532 1 23345889999999999999999999999987542 222222 22334 499999999999
Q ss_pred EEEEEecCC
Q 018242 259 FWVGIHSRR 267 (359)
Q Consensus 259 lwv~~~~~~ 267 (359)
+.++....+
T Consensus 304 ~Liaa~q~s 312 (346)
T COG2706 304 FLIAANQKS 312 (346)
T ss_pred EEEEEccCC
Confidence 777776544
No 19
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.27 E-value=2.2e-08 Score=89.75 Aligned_cols=190 Identities=14% Similarity=0.029 Sum_probs=118.5
Q ss_pred CCCceEEEccCCCeeEE-ecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEE
Q 018242 34 IGPESLAFDALGEGPYT-GVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYI 112 (359)
Q Consensus 34 ~~p~~i~~~~~G~~l~~-~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v 112 (359)
..|.+++++++|+.+|+ +..++.|..||..+++.... +. ....+..++++++++.+|+
T Consensus 31 ~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~--------------------~~-~~~~~~~~~~~~~g~~l~~ 89 (300)
T TIGR03866 31 QRPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGT--------------------LP-SGPDPELFALHPNGKILYI 89 (300)
T ss_pred CCCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEe--------------------cc-CCCCccEEEECCCCCEEEE
Confidence 46889999999987765 45668999999887643321 11 1123567888985566777
Q ss_pred EeCC-CcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCC
Q 018242 113 ADAY-FGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATK 191 (359)
Q Consensus 113 ~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~ 191 (359)
+... +.|..+|..+++...... ....+.+++++|+|+.++++... ...+..+|.+++
T Consensus 90 ~~~~~~~l~~~d~~~~~~~~~~~-----~~~~~~~~~~~~dg~~l~~~~~~-----------------~~~~~~~d~~~~ 147 (300)
T TIGR03866 90 ANEDDNLVTVIDIETRKVLAEIP-----VGVEPEGMAVSPDGKIVVNTSET-----------------TNMAHFIDTKTY 147 (300)
T ss_pred EcCCCCeEEEEECCCCeEEeEee-----CCCCcceEEECCCCCEEEEEecC-----------------CCeEEEEeCCCC
Confidence 7543 458889988765322111 01246789999999944444211 123556787766
Q ss_pred cEEEEeCCCCCCceEEEccCCCEEEEEecCCCEEEEEEcCCCCCcceeEeec-----CCCCCCceEECCCCCE-EEEEec
Q 018242 192 QVTVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQ-----LPGFPDNIKRSPRGGF-WVGIHS 265 (359)
Q Consensus 192 ~~~~~~~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~-----~~~~p~~i~~d~~G~l-wv~~~~ 265 (359)
+..........|..++++++++.++++...++.|..|++...+....-.+.. ....|.+++++++|+. |++...
T Consensus 148 ~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~ 227 (300)
T TIGR03866 148 EIVDNVLVDQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGP 227 (300)
T ss_pred eEEEEEEcCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCC
Confidence 5543222234578899999999888887677899999986542211101110 0113567889999974 665543
Q ss_pred C
Q 018242 266 R 266 (359)
Q Consensus 266 ~ 266 (359)
.
T Consensus 228 ~ 228 (300)
T TIGR03866 228 A 228 (300)
T ss_pred C
Confidence 3
No 20
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.19 E-value=1.1e-08 Score=94.58 Aligned_cols=290 Identities=14% Similarity=0.173 Sum_probs=148.4
Q ss_pred EEEEeeCCCCCCceEEEccCCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEe
Q 018242 25 VVQYQIEGAIGPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFN 104 (359)
Q Consensus 25 ~~~~~~~~~~~p~~i~~~~~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~ 104 (359)
+-++..+. .-+.++.+.+||+.+|+...++.|.++|+.+.+... ....+..|.+++++
T Consensus 29 ~~~i~~~~-~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~---------------------~i~~G~~~~~i~~s 86 (369)
T PF02239_consen 29 VARIPTGG-APHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVA---------------------TIKVGGNPRGIAVS 86 (369)
T ss_dssp EEEEE-ST-TEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEE---------------------EEE-SSEEEEEEE-
T ss_pred EEEEcCCC-CceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEE---------------------EEecCCCcceEEEc
Confidence 34666653 224567889999999999989999999999875321 12344668999999
Q ss_pred cCCCeEEEEeCC-CcEEEEeCCCCeEEEEeecC---CCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCC
Q 018242 105 KTNGDLYIADAY-FGLLKVGPEGGLATAVATQS---EGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKT 180 (359)
Q Consensus 105 ~~~g~l~v~~~~-~~i~~~~~~~~~~~~~~~~~---~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~ 180 (359)
+++..+++++.. +.+..+|.++.+........ ...+...+.+|..++... .|+... ...
T Consensus 87 ~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~-~fVv~l----------------kd~ 149 (369)
T PF02239_consen 87 PDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRP-EFVVNL----------------KDT 149 (369)
T ss_dssp -TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSS-EEEEEE----------------TTT
T ss_pred CCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCC-EEEEEE----------------ccC
Confidence 966678888654 46889998886643322211 111223456777777777 666522 224
Q ss_pred ceEEEEeCCCCc-EE-EEeCCCCCCceEEEccCCCEEEEEecCCCEEEEEEcCCCCCcceeEeecCCC----CCCceEEC
Q 018242 181 GRLMKYDPATKQ-VT-VLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPG----FPDNIKRS 254 (359)
Q Consensus 181 g~v~~~d~~~~~-~~-~~~~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~----~p~~i~~d 254 (359)
+.|+.+|..... .. ........|.+..++|++++++++....+.|..+|....+. ....+... .|..-..+
T Consensus 150 ~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~---v~~i~~g~~p~~~~~~~~ph 226 (369)
T PF02239_consen 150 GEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKL---VALIDTGKKPHPGPGANFPH 226 (369)
T ss_dssp TEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEE---EEEEE-SSSBEETTEEEEEE
T ss_pred CeEEEEEeccccccceeeecccccccccccCcccceeeecccccceeEEEeeccceE---EEEeeccccccccccccccC
Confidence 678888865432 21 22334567889999999999999888889999999654322 21222111 11111223
Q ss_pred CC-CCEEEEEecCCCc---c-ccccc-cCCccceeeecCCccceeeeeecccccCcceEEEEE---CCCCCEEEEEEccC
Q 018242 255 PR-GGFWVGIHSRRKG---I-SKLVL-SFPWIGNVLIKLPIDIVKIHSSLVKLSGNGGMAMRI---SEQGNVLEILEEIG 325 (359)
Q Consensus 255 ~~-G~lwv~~~~~~~~---~-~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~g~~~~~~~~~~ 325 (359)
+. |-+|......... + ...+. ......+..++++..... +++...++...+..- +++...+..+....
T Consensus 227 p~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~g---lFi~thP~s~~vwvd~~~~~~~~~v~viD~~t 303 (369)
T PF02239_consen 227 PGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGG---LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKT 303 (369)
T ss_dssp TTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS-----EE--TT-SEEEEE-TT-SSHT-EEEEECCG
T ss_pred CCcceEEeeccccceecccccCCccccchhhcCeEEEEEECCCCc---ceeecCCCCccEEeeccCCCCCceEEEEECcC
Confidence 32 3455433221100 0 00023 223467778777765332 111111110112111 23434444432222
Q ss_pred Cceeec--------eEEE--EEeCCEEEEecCCCC-eEEEEcCCC
Q 018242 326 RKMWRS--------ISEV--EEKDGNLWIGSVNMP-YAGLYNYSS 359 (359)
Q Consensus 326 g~~~~~--------~~~~--~~~~g~l~ig~~~~~-~l~~~~~~~ 359 (359)
...... +.-+ ..++.++|++.++.+ .|.+++..+
T Consensus 304 l~~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~T 348 (369)
T PF02239_consen 304 LKVVKTITPGPGKRVVHMEFNPDGKEVWVSVWDGNGAIVVYDAKT 348 (369)
T ss_dssp TEEEE-HHHHHT--EEEEEE-TTSSEEEEEEE--TTEEEEEETTT
T ss_pred cceeEEEeccCCCcEeccEECCCCCEEEEEEecCCCEEEEEECCC
Confidence 111111 1112 234679999999998 999998653
No 21
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=99.19 E-value=5.9e-08 Score=90.43 Aligned_cols=193 Identities=16% Similarity=0.161 Sum_probs=132.8
Q ss_pred CCCceEEEccCCCeeEEecCC-CEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEE
Q 018242 34 IGPESLAFDALGEGPYTGVSD-GRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYI 112 (359)
Q Consensus 34 ~~p~~i~~~~~G~~l~~~~~~-~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v 112 (359)
..|.+++..++|.-+|+.... ..+...+...+....+ .......|.++++++...++|+
T Consensus 31 ~~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~~n~~~~~--------------------~~~g~~~p~~i~v~~~~~~vyv 90 (381)
T COG3391 31 RGPGGVAVNPDGTQVYVANSGSNDVSVIDATSNTVTQS--------------------LSVGGVYPAGVAVNPAGNKVYV 90 (381)
T ss_pred CCCceeEEcCccCEEEEEeecCceeeecccccceeeee--------------------ccCCCccccceeeCCCCCeEEE
Confidence 489999999999556665533 3455554442211111 0111156889999986777999
Q ss_pred EeCC-CcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCC
Q 018242 113 ADAY-FGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATK 191 (359)
Q Consensus 113 ~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~ 191 (359)
.+.. +.+..+|..+.+....... ...|.+++++++++++|+++... ..+.+..+|..++
T Consensus 91 ~~~~~~~v~vid~~~~~~~~~~~v-----G~~P~~~~~~~~~~~vYV~n~~~---------------~~~~vsvid~~t~ 150 (381)
T COG3391 91 TTGDSNTVSVIDTATNTVLGSIPV-----GLGPVGLAVDPDGKYVYVANAGN---------------GNNTVSVIDAATN 150 (381)
T ss_pred ecCCCCeEEEEcCcccceeeEeee-----ccCCceEEECCCCCEEEEEeccc---------------CCceEEEEeCCCC
Confidence 8754 5688898766654433221 12788999999998899997641 2457999999887
Q ss_pred cEEEEeCCCCCCceEEEccCCCEEEEEecCCCEEEEEEcCCCCCcc-e-eEeecCCCCCCceEECCCCC-EEEEEecC
Q 018242 192 QVTVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGT-I-EIVAQLPGFPDNIKRSPRGG-FWVGIHSR 266 (359)
Q Consensus 192 ~~~~~~~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~-~-~~~~~~~~~p~~i~~d~~G~-lwv~~~~~ 266 (359)
+..........|.+++++|+|+.+|+++..++.|..++.+...... . .........|.+++++++|+ +|++....
T Consensus 151 ~~~~~~~vG~~P~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~ 228 (381)
T COG3391 151 KVTATIPVGNTPTGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGS 228 (381)
T ss_pred eEEEEEecCCCcceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccC
Confidence 7655444445689999999999999999999999999965542221 0 00122345689999999997 88877664
No 22
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=99.18 E-value=1e-08 Score=95.52 Aligned_cols=190 Identities=19% Similarity=0.258 Sum_probs=135.0
Q ss_pred CCCceEEEccCCCeeEEecC-CCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEE
Q 018242 34 IGPESLAFDALGEGPYTGVS-DGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYI 112 (359)
Q Consensus 34 ~~p~~i~~~~~G~~l~~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v 112 (359)
..|.+++..+.|...|+... .+.|..+|..+...... ......|.+++++++++.+|+
T Consensus 74 ~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~---------------------~~vG~~P~~~~~~~~~~~vYV 132 (381)
T COG3391 74 VYPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGS---------------------IPVGLGPVGLAVDPDGKYVYV 132 (381)
T ss_pred ccccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeE---------------------eeeccCCceEEECCCCCEEEE
Confidence 78999999999987776654 47899999766543332 122236899999998889999
Q ss_pred EeCC---CcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCC
Q 018242 113 ADAY---FGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPA 189 (359)
Q Consensus 113 ~~~~---~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~ 189 (359)
++.. +.+..+|..++++..... . + ..|.+++++|+|+++|+++.. .+.|..+|.+
T Consensus 133 ~n~~~~~~~vsvid~~t~~~~~~~~-v-G---~~P~~~a~~p~g~~vyv~~~~-----------------~~~v~vi~~~ 190 (381)
T COG3391 133 ANAGNGNNTVSVIDAATNKVTATIP-V-G---NTPTGVAVDPDGNKVYVTNSD-----------------DNTVSVIDTS 190 (381)
T ss_pred EecccCCceEEEEeCCCCeEEEEEe-c-C---CCcceEEECCCCCeEEEEecC-----------------CCeEEEEeCC
Confidence 9873 358899999887654422 1 1 145789999999999999743 4578889987
Q ss_pred CCcEEE-----EeCCCCCCceEEEccCCCEEEEEecCC--CEEEEEEcCCCCCcceeEeecCCCCCCceEECCCCC-EEE
Q 018242 190 TKQVTV-----LLGNLSFPNGVALSEDGNYILLAETTS--CRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGG-FWV 261 (359)
Q Consensus 190 ~~~~~~-----~~~~~~~p~gia~~~d~~~l~v~~~~~--~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~-lwv 261 (359)
+..+.. .......|.+++++++++.+|+++..+ +.+.+++...........-.... .|.++.++++|. +|+
T Consensus 191 ~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~-~~~~v~~~p~g~~~yv 269 (381)
T COG3391 191 GNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGSG-APRGVAVDPAGKAAYV 269 (381)
T ss_pred CcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEeccccccC-CCCceeECCCCCEEEE
Confidence 655543 123356789999999999999999887 58988886554222111111122 588999999996 555
Q ss_pred EEecCC
Q 018242 262 GIHSRR 267 (359)
Q Consensus 262 ~~~~~~ 267 (359)
+....+
T Consensus 270 ~~~~~~ 275 (381)
T COG3391 270 ANSQGG 275 (381)
T ss_pred EecCCC
Confidence 655433
No 23
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=99.13 E-value=6.6e-09 Score=92.87 Aligned_cols=151 Identities=17% Similarity=0.210 Sum_probs=101.9
Q ss_pred CCCCCceEEEccCCCeeEEecCC------------CEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcce
Q 018242 32 GAIGPESLAFDALGEGPYTGVSD------------GRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPL 99 (359)
Q Consensus 32 ~~~~p~~i~~~~~G~~l~~~~~~------------~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 99 (359)
+.+.|.+..++++|+ +|++++. |.||++++.+...+.+ ......|+
T Consensus 109 ~~~r~ND~~v~pdG~-~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~---------------------~~~~~~~N 166 (307)
T COG3386 109 PLNRPNDGVVDPDGR-IWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLL---------------------DDDLTIPN 166 (307)
T ss_pred CcCCCCceeEcCCCC-EEEeCCCccccCccccCCcceEEEEcCCCCEEEee---------------------cCcEEecC
Confidence 357899999999999 7777654 4688998855422221 12134588
Q ss_pred EEEEecCCCeEEEEeCC-CcEEEEeCCC--CeE---EEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceee
Q 018242 100 GLCFNKTNGDLYIADAY-FGLLKVGPEG--GLA---TAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISV 173 (359)
Q Consensus 100 gi~~~~~~g~l~v~~~~-~~i~~~~~~~--~~~---~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~ 173 (359)
||++++++..+|++++. +.|++++.+. +.. ..... .......|.++++|.+|+ +|++--
T Consensus 167 Gla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~--~~~~~G~PDG~~vDadG~-lw~~a~------------ 231 (307)
T COG3386 167 GLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVD--FDEEPGLPDGMAVDADGN-LWVAAV------------ 231 (307)
T ss_pred ceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEE--ccCCCCCCCceEEeCCCC-EEEecc------------
Confidence 99999977799999875 5689987652 211 11111 111235788999999999 997511
Q ss_pred eeecCCCceEEEEeCCCCcEEEEeCCCCCCceEEEc-cCCCEEEEEecCCC
Q 018242 174 ILSGDKTGRLMKYDPATKQVTVLLGNLSFPNGVALS-EDGNYILLAETTSC 223 (359)
Q Consensus 174 ~~~~~~~g~v~~~d~~~~~~~~~~~~~~~p~gia~~-~d~~~l~v~~~~~~ 223 (359)
...++|.+++|++.....+.-....|..++|. ++.++||++....+
T Consensus 232 ----~~g~~v~~~~pdG~l~~~i~lP~~~~t~~~FgG~~~~~L~iTs~~~~ 278 (307)
T COG3386 232 ----WGGGRVVRFNPDGKLLGEIKLPVKRPTNPAFGGPDLNTLYITSARSG 278 (307)
T ss_pred ----cCCceEEEECCCCcEEEEEECCCCCCccceEeCCCcCEEEEEecCCC
Confidence 11238999999955555554444667788885 66788999987763
No 24
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=99.10 E-value=2.1e-08 Score=91.52 Aligned_cols=172 Identities=17% Similarity=0.172 Sum_probs=100.9
Q ss_pred CCCCceEEEccCCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecC---CCe
Q 018242 33 AIGPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKT---NGD 109 (359)
Q Consensus 33 ~~~p~~i~~~~~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~---~g~ 109 (359)
++.|.+|++.|||+ +|++...|.|++++.++.....+...+ . ..........|++++++ ++.
T Consensus 1 L~~P~~~a~~pdG~-l~v~e~~G~i~~~~~~g~~~~~v~~~~-~-------------v~~~~~~gllgia~~p~f~~n~~ 65 (331)
T PF07995_consen 1 LNNPRSMAFLPDGR-LLVAERSGRIWVVDKDGSLKTPVADLP-E-------------VFADGERGLLGIAFHPDFASNGY 65 (331)
T ss_dssp ESSEEEEEEETTSC-EEEEETTTEEEEEETTTEECEEEEE-T-T-------------TBTSTTBSEEEEEE-TTCCCC-E
T ss_pred CCCceEEEEeCCCc-EEEEeCCceEEEEeCCCcCcceecccc-c-------------ccccccCCcccceeccccCCCCE
Confidence 36899999999999 777777999999995554212222111 0 11222345789999983 589
Q ss_pred EEEEeCC---------CcEEEEeCCCC--eE---EEEeecCCC--ccccccceEEEeCCCCEEEEEeCCCccccccceee
Q 018242 110 LYIADAY---------FGLLKVGPEGG--LA---TAVATQSEG--IPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISV 173 (359)
Q Consensus 110 l~v~~~~---------~~i~~~~~~~~--~~---~~~~~~~~~--~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~ 173 (359)
+|++... ..|.|+....+ .+ +.+....+. ...+....|+++|||. ||++.-..... . ..
T Consensus 66 lYv~~t~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~-LYvs~G~~~~~-~---~~ 140 (331)
T PF07995_consen 66 LYVYYTNADEDGGDNDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGK-LYVSVGDGGND-D---NA 140 (331)
T ss_dssp EEEEEEEE-TSSSSEEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSE-EEEEEB-TTTG-G---GG
T ss_pred EEEEEEcccCCCCCcceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCc-EEEEeCCCCCc-c---cc
Confidence 9998542 24777766544 22 222221111 2334566799999997 99995332110 0 00
Q ss_pred eeecCCCceEEEEeCCCC-------------cEEEEeCCCCCCceEEEccCCCEEEEEecCCCE
Q 018242 174 ILSGDKTGRLMKYDPATK-------------QVTVLLGNLSFPNGVALSEDGNYILLAETTSCR 224 (359)
Q Consensus 174 ~~~~~~~g~v~~~d~~~~-------------~~~~~~~~~~~p~gia~~~d~~~l~v~~~~~~~ 224 (359)
.......|+|+++++++. ..+.+..++..|.+++|+|....||+++.....
T Consensus 141 ~~~~~~~G~ilri~~dG~~p~dnP~~~~~~~~~~i~A~GlRN~~~~~~d~~tg~l~~~d~G~~~ 204 (331)
T PF07995_consen 141 QDPNSLRGKILRIDPDGSIPADNPFVGDDGADSEIYAYGLRNPFGLAFDPNTGRLWAADNGPDG 204 (331)
T ss_dssp CSTTSSTTEEEEEETTSSB-TTSTTTTSTTSTTTEEEE--SEEEEEEEETTTTEEEEEEE-SSS
T ss_pred cccccccceEEEecccCcCCCCCccccCCCceEEEEEeCCCccccEEEECCCCcEEEEccCCCC
Confidence 001234678999998753 234455677889999999984458998876543
No 25
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.08 E-value=9e-08 Score=91.08 Aligned_cols=196 Identities=15% Similarity=0.176 Sum_probs=130.9
Q ss_pred CCCCceEEEccCCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEE
Q 018242 33 AIGPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYI 112 (359)
Q Consensus 33 ~~~p~~i~~~~~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v 112 (359)
...-.+++.+|||.++.++..+|+|-.||...+ +... .+........++.|.. .|+..+
T Consensus 350 ~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~Sg-fC~v-------------------TFteHts~Vt~v~f~~-~g~~ll 408 (893)
T KOG0291|consen 350 SDRITSLAYSPDGQLIATGAEDGKVKVWNTQSG-FCFV-------------------TFTEHTSGVTAVQFTA-RGNVLL 408 (893)
T ss_pred ccceeeEEECCCCcEEEeccCCCcEEEEeccCc-eEEE-------------------EeccCCCceEEEEEEe-cCCEEE
Confidence 345569999999998889999999999998775 3332 2334445577899998 777766
Q ss_pred EeCCC-cEEEEeCCCCe-EEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCC
Q 018242 113 ADAYF-GLLKVGPEGGL-ATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPAT 190 (359)
Q Consensus 113 ~~~~~-~i~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~ 190 (359)
+..-+ .+..+|.+..+ .+.+.. ........+++||.|. |.++-.... =.|+.|+.+|
T Consensus 409 ssSLDGtVRAwDlkRYrNfRTft~----P~p~QfscvavD~sGe-lV~AG~~d~----------------F~IfvWS~qT 467 (893)
T KOG0291|consen 409 SSSLDGTVRAWDLKRYRNFRTFTS----PEPIQFSCVAVDPSGE-LVCAGAQDS----------------FEIFVWSVQT 467 (893)
T ss_pred EeecCCeEEeeeecccceeeeecC----CCceeeeEEEEcCCCC-EEEeeccce----------------EEEEEEEeec
Confidence 65444 47778876433 222211 1122456789999999 666632211 1589999999
Q ss_pred CcEEEEeCCCCCC-ceEEEccCCCEEEEEecCCCEEEEEEcCCCCCcceeEeecCCCCCCceEECCCCC-EEEEEecCCC
Q 018242 191 KQVTVLLGNLSFP-NGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGG-FWVGIHSRRK 268 (359)
Q Consensus 191 ~~~~~~~~~~~~p-~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~-lwv~~~~~~~ 268 (359)
|++..+..+-.+| .+++|++++. ++++.+.+.+|..|++-... ++.+.+.- ..-.-++.+.|+|+ |-|++..+.
T Consensus 468 GqllDiLsGHEgPVs~l~f~~~~~-~LaS~SWDkTVRiW~if~s~-~~vEtl~i-~sdvl~vsfrPdG~elaVaTldgq- 543 (893)
T KOG0291|consen 468 GQLLDILSGHEGPVSGLSFSPDGS-LLASGSWDKTVRIWDIFSSS-GTVETLEI-RSDVLAVSFRPDGKELAVATLDGQ- 543 (893)
T ss_pred CeeeehhcCCCCcceeeEEccccC-eEEeccccceEEEEEeeccC-ceeeeEee-ccceeEEEEcCCCCeEEEEEecce-
Confidence 9887665554444 7899999998 77888899999999975431 12222211 11133578889995 778887654
Q ss_pred ccccccccCCc
Q 018242 269 GISKLVLSFPW 279 (359)
Q Consensus 269 ~~~~~~~~~~~ 279 (359)
+..|+.
T Consensus 544 -----Itf~d~ 549 (893)
T KOG0291|consen 544 -----ITFFDI 549 (893)
T ss_pred -----EEEEEh
Confidence 555553
No 26
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=99.08 E-value=6.3e-08 Score=83.78 Aligned_cols=202 Identities=12% Similarity=0.113 Sum_probs=108.9
Q ss_pred EeeCCC-CCCceEEEccCCCeeE-EecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEec
Q 018242 28 YQIEGA-IGPESLAFDALGEGPY-TGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNK 105 (359)
Q Consensus 28 ~~~~~~-~~p~~i~~~~~G~~l~-~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~ 105 (359)
..++++ ..+.+|+++|+.+.|| +....+.|+.++.++.-.+.+. +. ..+.+-||++..
T Consensus 15 ~~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~G~vlr~i~-------------------l~-g~~D~EgI~y~g 74 (248)
T PF06977_consen 15 KPLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLDGKVLRRIP-------------------LD-GFGDYEGITYLG 74 (248)
T ss_dssp EE-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT--EEEEEE--------------------S-S-SSEEEEEE-S
T ss_pred eECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCCCCEEEEEe-------------------CC-CCCCceeEEEEC
Confidence 345443 3589999999866577 4556689999998754333332 11 234577899886
Q ss_pred CCCeEEEEeC-CCcEEEEeCC--CCeE-----EEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeec
Q 018242 106 TNGDLYIADA-YFGLLKVGPE--GGLA-----TAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSG 177 (359)
Q Consensus 106 ~~g~l~v~~~-~~~i~~~~~~--~~~~-----~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~ 177 (359)
++.+.+++. .+.|+.++.. +... +.+.............+|++|+.++++|++. .
T Consensus 75 -~~~~vl~~Er~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~k----------------E 137 (248)
T PF06977_consen 75 -NGRYVLSEERDQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAK----------------E 137 (248)
T ss_dssp -TTEEEEEETTTTEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEE----------------E
T ss_pred -CCEEEEEEcCCCcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEe----------------C
Confidence 777777764 3457776652 2221 1121111222334578999999988799882 1
Q ss_pred CCCceEEEEeC--CCCcEEEEe--------CCCCCCceEEEccCCCEEEEEecCCCEEEEEEcCCCCCcceeEeecCC--
Q 018242 178 DKTGRLMKYDP--ATKQVTVLL--------GNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLP-- 245 (359)
Q Consensus 178 ~~~g~v~~~d~--~~~~~~~~~--------~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~-- 245 (359)
.....|+.++. ....+.... .....+.+++++|..+.||+....+..|..+|.++.............
T Consensus 138 ~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d~~G~~~~~~~L~~g~~gl 217 (248)
T PF06977_consen 138 RKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELDRQGRVVSSLSLDRGFHGL 217 (248)
T ss_dssp SSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE-TT--EEEEEE-STTGGG-
T ss_pred CCChhhEEEccccCccceeeccccccccccceeccccceEEcCCCCeEEEEECCCCeEEEECCCCCEEEEEEeCCcccCc
Confidence 12235676664 222222111 123457899999988889999999999999986543211111111011
Q ss_pred ----CCCCceEECCCCCEEEEEecC
Q 018242 246 ----GFPDNIKRSPRGGFWVGIHSR 266 (359)
Q Consensus 246 ----~~p~~i~~d~~G~lwv~~~~~ 266 (359)
..|.||++|++|+|||.+-++
T Consensus 218 ~~~~~QpEGIa~d~~G~LYIvsEpN 242 (248)
T PF06977_consen 218 SKDIPQPEGIAFDPDGNLYIVSEPN 242 (248)
T ss_dssp SS---SEEEEEE-TT--EEEEETTT
T ss_pred ccccCCccEEEECCCCCEEEEcCCc
Confidence 248899999999999988653
No 27
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=99.06 E-value=1.6e-07 Score=83.73 Aligned_cols=151 Identities=21% Similarity=0.244 Sum_probs=98.6
Q ss_pred ceEEEEecCCCeEEEEeCCC-------------cEEEEeCCCCeEEEEeecCC--CccccccceEEEeCCC-----CEEE
Q 018242 98 PLGLCFNKTNGDLYIADAYF-------------GLLKVGPEGGLATAVATQSE--GIPFRFCNSLDIDQST-----GIIY 157 (359)
Q Consensus 98 p~gi~~~~~~g~l~v~~~~~-------------~i~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~d~~g-----~~l~ 157 (359)
..++.+|+ .++|||-|.+. .|+.+|++++++........ ..+....+++++|... .++|
T Consensus 3 V~~v~iD~-~~rLWVlD~G~~~~~~~~~~~~~pKLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aY 81 (287)
T PF03022_consen 3 VQRVQIDE-CGRLWVLDSGRPNGLQPPKQVCPPKLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAY 81 (287)
T ss_dssp EEEEEE-T-TSEEEEEE-CCHSSSSTTGHTS--EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEE
T ss_pred ccEEEEcC-CCCEEEEeCCCcCCCCCCCCCCCcEEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEE
Confidence 45788998 99999998642 48999999988654333211 1245688999999732 3699
Q ss_pred EEeCCCccccccceeeeeecCCCceEEEEeCCCCcEEEEeCCCC--------------------CCceEEEcc---CCCE
Q 018242 158 FTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQVTVLLGNLS--------------------FPNGVALSE---DGNY 214 (359)
Q Consensus 158 v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~--------------------~p~gia~~~---d~~~ 214 (359)
++|.+ ..+|.++|..+++...+..+.. +..|+++++ |+++
T Consensus 82 ItD~~-----------------~~glIV~dl~~~~s~Rv~~~~~~~~p~~~~~~i~g~~~~~~dg~~gial~~~~~d~r~ 144 (287)
T PF03022_consen 82 ITDSG-----------------GPGLIVYDLATGKSWRVLHNSFSPDPDAGPFTIGGESFQWPDGIFGIALSPISPDGRW 144 (287)
T ss_dssp EEETT-----------------TCEEEEEETTTTEEEEEETCGCTTS-SSEEEEETTEEEEETTSEEEEEE-TTSTTS-E
T ss_pred EeCCC-----------------cCcEEEEEccCCcEEEEecCCcceeccccceeccCceEecCCCccccccCCCCCCccE
Confidence 99876 2378889988877766543311 124778865 8889
Q ss_pred EEEEecCCCEEEEEEcC---CCCCc-------ceeEeecCCCCCCceEECCCCCEEEEEecC
Q 018242 215 ILLAETTSCRILRYWLK---TSKAG-------TIEIVAQLPGFPDNIKRSPRGGFWVGIHSR 266 (359)
Q Consensus 215 l~v~~~~~~~i~~~~~~---~~~~~-------~~~~~~~~~~~p~~i~~d~~G~lwv~~~~~ 266 (359)
||+....+..+++...+ ..... ..+.+.+.++..++++.|++|+||++....
T Consensus 145 LYf~~lss~~ly~v~T~~L~~~~~~~~~~~~~~v~~lG~k~~~s~g~~~D~~G~ly~~~~~~ 206 (287)
T PF03022_consen 145 LYFHPLSSRKLYRVPTSVLRDPSLSDAQALASQVQDLGDKGSQSDGMAIDPNGNLYFTDVEQ 206 (287)
T ss_dssp EEEEETT-SEEEEEEHHHHCSTT--HHH-HHHT-EEEEE---SECEEEEETTTEEEEEECCC
T ss_pred EEEEeCCCCcEEEEEHHHhhCccccccccccccceeccccCCCCceEEECCCCcEEEecCCC
Confidence 99999888899998853 22221 122333333446889999999999999763
No 28
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=99.02 E-value=8.1e-08 Score=89.17 Aligned_cols=211 Identities=20% Similarity=0.230 Sum_probs=124.3
Q ss_pred EEeeCCCCCCceEEEccCCCeeEEecCCCEEEEE-EcCCc-----ceEEEeecCCCCCCCCCCcccccccccc----cCC
Q 018242 27 QYQIEGAIGPESLAFDALGEGPYTGVSDGRIIKW-HQDQR-----RWLHFARTSPNRDGCEGAYEYDHAAKEH----ICG 96 (359)
Q Consensus 27 ~~~~~~~~~p~~i~~~~~G~~l~~~~~~~~i~~~-d~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~ 96 (359)
++.++++..|++|++.++| +|++.. ..|+++ +.+.. +.+.+.. .+.. ..+
T Consensus 65 ~vfa~~l~~p~Gi~~~~~G--lyV~~~-~~i~~~~d~~gdg~ad~~~~~l~~-----------------~~~~~~~~~~~ 124 (367)
T TIGR02604 65 NVFAEELSMVTGLAVAVGG--VYVATP-PDILFLRDKDGDDKADGEREVLLS-----------------GFGGQINNHHH 124 (367)
T ss_pred EEeecCCCCccceeEecCC--EEEeCC-CeEEEEeCCCCCCCCCCccEEEEE-----------------ccCCCCCcccc
Confidence 5666678899999999888 666654 468877 43321 1111110 1111 124
Q ss_pred cceEEEEecCCCeEEEEeCC--------------------CcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEE
Q 018242 97 RPLGLCFNKTNGDLYIADAY--------------------FGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGII 156 (359)
Q Consensus 97 ~p~gi~~~~~~g~l~v~~~~--------------------~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l 156 (359)
.++++++.+ +|.||++... ++++++++++++++.+.. .+..|++++++++|+ +
T Consensus 125 ~~~~l~~gp-DG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~pdg~~~e~~a~-----G~rnp~Gl~~d~~G~-l 197 (367)
T TIGR02604 125 SLNSLAWGP-DGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNPDGGKLRVVAH-----GFQNPYGHSVDSWGD-V 197 (367)
T ss_pred cccCceECC-CCCEEEecccCCCceeccCCCccCcccccCceEEEEecCCCeEEEEec-----CcCCCccceECCCCC-E
Confidence 477899999 8999997541 248999999988776543 356899999999999 9
Q ss_pred EEEeCCCccccccceeeeeecCCCceEE-----EEeCCCC---cE-------------EE--EeCCCCCCceEEEcc---
Q 018242 157 YFTDSSSQFQRRNHISVILSGDKTGRLM-----KYDPATK---QV-------------TV--LLGNLSFPNGVALSE--- 210 (359)
Q Consensus 157 ~v~d~~~~~~~~~~~~~~~~~~~~g~v~-----~~d~~~~---~~-------------~~--~~~~~~~p~gia~~~--- 210 (359)
|++|..... ......+......+..+ ..++..+ +. .. .......|.|+++..
T Consensus 198 ~~tdn~~~~--~~~i~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ap~G~~~y~g~~ 275 (367)
T TIGR02604 198 FFCDNDDPP--LCRVTPVAEGGRNGYQSFNGRRYDHADRGADHEVPTGEWRQDDRGVETVGDVAGGGTAPCGIAFYRGDA 275 (367)
T ss_pred EEEccCCCc--eeEEcccccccccCCCCCCCcccccccccccccccccccccccccccccccccCCCccccEEEEeCCCc
Confidence 999764211 00000000010001000 0001000 00 00 011224678888873
Q ss_pred ----CCCEEEEEecCCCEEEEEEcCCCCC--c-ceeEeec-CC--CCCCceEECCCCCEEEEEecC
Q 018242 211 ----DGNYILLAETTSCRILRYWLKTSKA--G-TIEIVAQ-LP--GFPDNIKRSPRGGFWVGIHSR 266 (359)
Q Consensus 211 ----d~~~l~v~~~~~~~i~~~~~~~~~~--~-~~~~~~~-~~--~~p~~i~~d~~G~lwv~~~~~ 266 (359)
-.+.+++++...+.|+++.++.... . +...+.. .. ..|.++.+++||.|||+++-.
T Consensus 276 fp~~~~g~~fv~~~~~~~v~~~~l~~~g~~~~~~~~~~l~~~~~~~rp~dv~~~pDG~Lyv~d~~~ 341 (367)
T TIGR02604 276 LPEEYRGLLLVGDAHGQLIVRYSLEPKGAGFKGERPEFLRSNDTWFRPVNVTVGPDGALYVSDWYD 341 (367)
T ss_pred CCHHHCCCEEeeeccCCEEEEEEeecCCCccEeecCceEecCCCcccccceeECCCCCEEEEEecc
Confidence 1234899999999999999864321 1 1112222 11 468889999999999999754
No 29
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=98.99 E-value=7.1e-07 Score=81.09 Aligned_cols=236 Identities=13% Similarity=0.022 Sum_probs=125.1
Q ss_pred EEeeCCCCCCceEEEccCCCeeEEecC----------CCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCC
Q 018242 27 QYQIEGAIGPESLAFDALGEGPYTGVS----------DGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICG 96 (359)
Q Consensus 27 ~~~~~~~~~p~~i~~~~~G~~l~~~~~----------~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (359)
.++.+ ..|+++ +++||+.+|++.. .+.|..+|..+.+...--..+.. | .+ ....
T Consensus 42 ~i~~G--~~P~~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~---------p---~~-~~~~ 105 (352)
T TIGR02658 42 MTDGG--FLPNPV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEG---------P---RF-LVGT 105 (352)
T ss_pred EEEcc--CCCcee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCC---------c---hh-hccC
Confidence 66666 599997 9999999998776 47899999998754422111100 0 00 0123
Q ss_pred cceEEEEecCCCeEEEEeCC--CcEEEEeCCCCeEEEEeecCCCcccccc----ceEEEeCCCCEEEEEe---------C
Q 018242 97 RPLGLCFNKTNGDLYIADAY--FGLLKVGPEGGLATAVATQSEGIPFRFC----NSLDIDQSTGIIYFTD---------S 161 (359)
Q Consensus 97 ~p~gi~~~~~~g~l~v~~~~--~~i~~~~~~~~~~~~~~~~~~~~~~~~~----~~l~~d~~g~~l~v~d---------~ 161 (359)
.|..+++++++..|||++.. +.+.++|..++++..-... ++-....+ ..+..-.||..+.++. .
T Consensus 106 ~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~v-p~~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~~~~~~ 184 (352)
T TIGR02658 106 YPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDV-PDCYHIFPTANDTFFMHCRDGSLAKVGYGTKGNPKIKP 184 (352)
T ss_pred ccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeC-CCCcEEEEecCCccEEEeecCceEEEEecCCCceEEee
Confidence 46688999966789998754 4688899888775432111 10000000 0011112222122110 0
Q ss_pred CCcc--------ccccc---eeeeeecCCCceEEEEeCCCCcEEE------EeC----CCCCCce---EEEccCCCEEEE
Q 018242 162 SSQF--------QRRNH---ISVILSGDKTGRLMKYDPATKQVTV------LLG----NLSFPNG---VALSEDGNYILL 217 (359)
Q Consensus 162 ~~~~--------~~~~~---~~~~~~~~~~g~v~~~d~~~~~~~~------~~~----~~~~p~g---ia~~~d~~~l~v 217 (359)
..-+ .+..+ ....+=-+..|.|+.+|..+..... +.. ....|.| +++++|++++||
T Consensus 185 ~~vf~~~~~~v~~rP~~~~~dg~~~~vs~eG~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV 264 (352)
T TIGR02658 185 TEVFHPEDEYLINHPAYSNKSGRLVWPTYTGKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYL 264 (352)
T ss_pred eeeecCCccccccCCceEcCCCcEEEEecCCeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEE
Confidence 0000 00000 0000000122678888854322221 110 1223444 999999999999
Q ss_pred Ee---------cCCCEEEEEEcCCCCCcceeEeecCCCCCCceEECCCCC-EEEEEec-CCCccccccccC-Cccceeee
Q 018242 218 AE---------TTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGG-FWVGIHS-RRKGISKLVLSF-PWIGNVLI 285 (359)
Q Consensus 218 ~~---------~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~-lwv~~~~-~~~~~~~~~~~~-~~~g~~~~ 285 (359)
+. ...+.|+++|.... +.......+..|.++++++||+ +.+++.+ ++. +.++ ...++.++
T Consensus 265 ~~~~~~~~thk~~~~~V~ViD~~t~---kvi~~i~vG~~~~~iavS~Dgkp~lyvtn~~s~~-----VsViD~~t~k~i~ 336 (352)
T TIGR02658 265 LADQRAKWTHKTASRFLFVVDAKTG---KRLRKIELGHEIDSINVSQDAKPLLYALSTGDKT-----LYIFDAETGKELS 336 (352)
T ss_pred EecCCccccccCCCCEEEEEECCCC---eEEEEEeCCCceeeEEECCCCCeEEEEeCCCCCc-----EEEEECcCCeEEe
Confidence 54 23368999996443 2222223455689999999998 4444443 332 3333 45677777
Q ss_pred cC
Q 018242 286 KL 287 (359)
Q Consensus 286 ~~ 287 (359)
++
T Consensus 337 ~i 338 (352)
T TIGR02658 337 SV 338 (352)
T ss_pred ee
Confidence 66
No 30
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=98.96 E-value=7.5e-06 Score=71.72 Aligned_cols=203 Identities=19% Similarity=0.221 Sum_probs=123.2
Q ss_pred CCCceEEEccCCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEE
Q 018242 34 IGPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIA 113 (359)
Q Consensus 34 ~~p~~i~~~~~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~ 113 (359)
....++.++++++.++++..++.+..|+..+.+.... ..........+.+.+++..++++
T Consensus 10 ~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~--------------------~~~~~~~i~~~~~~~~~~~l~~~ 69 (289)
T cd00200 10 GGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRT--------------------LKGHTGPVRDVAASADGTYLASG 69 (289)
T ss_pred CCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEE--------------------EecCCcceeEEEECCCCCEEEEE
Confidence 3456899999999788888889999999876532111 11111223477888844466666
Q ss_pred eCCCcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCCcE
Q 018242 114 DAYFGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQV 193 (359)
Q Consensus 114 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~ 193 (359)
...+.|..++..+++....... ....+..+.++++++ ++++. ...+.|..++..+++.
T Consensus 70 ~~~~~i~i~~~~~~~~~~~~~~----~~~~i~~~~~~~~~~-~~~~~-----------------~~~~~i~~~~~~~~~~ 127 (289)
T cd00200 70 SSDKTIRLWDLETGECVRTLTG----HTSYVSSVAFSPDGR-ILSSS-----------------SRDKTIKVWDVETGKC 127 (289)
T ss_pred cCCCeEEEEEcCcccceEEEec----cCCcEEEEEEcCCCC-EEEEe-----------------cCCCeEEEEECCCcEE
Confidence 6555688888876533221111 112567788999988 66652 2246788898875544
Q ss_pred EEEe-CCCCCCceEEEccCCCEEEEEecCCCEEEEEEcCCCCCcceeEeecCCCCCCceEECCCCC-EEEEEecCCCccc
Q 018242 194 TVLL-GNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGG-FWVGIHSRRKGIS 271 (359)
Q Consensus 194 ~~~~-~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~-lwv~~~~~~~~~~ 271 (359)
.... ........++++++++ ++++...++.|..|++...+. ...+.........+.++++|+ ++++.. .+.
T Consensus 128 ~~~~~~~~~~i~~~~~~~~~~-~l~~~~~~~~i~i~d~~~~~~--~~~~~~~~~~i~~~~~~~~~~~l~~~~~-~~~--- 200 (289)
T cd00200 128 LTTLRGHTDWVNSVAFSPDGT-FVASSSQDGTIKLWDLRTGKC--VATLTGHTGEVNSVAFSPDGEKLLSSSS-DGT--- 200 (289)
T ss_pred EEEeccCCCcEEEEEEcCcCC-EEEEEcCCCcEEEEEcccccc--ceeEecCccccceEEECCCcCEEEEecC-CCc---
Confidence 3322 2334467889999876 455555578899999764321 122222223456789999885 555554 332
Q ss_pred cccccCCc-cceeeecC
Q 018242 272 KLVLSFPW-IGNVLIKL 287 (359)
Q Consensus 272 ~~~~~~~~-~g~~~~~~ 287 (359)
+..++. .++....+
T Consensus 201 --i~i~d~~~~~~~~~~ 215 (289)
T cd00200 201 --IKLWDLSTGKCLGTL 215 (289)
T ss_pred --EEEEECCCCceecch
Confidence 455543 35555554
No 31
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=98.96 E-value=4.2e-07 Score=82.09 Aligned_cols=267 Identities=13% Similarity=0.139 Sum_probs=152.0
Q ss_pred CCceEEEccCCCeeEEecCCCEEEEEEcC--CcceEEEeecCCCCCCCCCCcccccccccccCCcc-eEEEEecCCCe--
Q 018242 35 GPESLAFDALGEGPYTGVSDGRIIKWHQD--QRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRP-LGLCFNKTNGD-- 109 (359)
Q Consensus 35 ~p~~i~~~~~G~~l~~~~~~~~i~~~d~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~gi~~~~~~g~-- 109 (359)
+..++.|.|.-.++.++..++.+..|..+ ++...+ . .....-| ...+|.+ +|.
T Consensus 215 ~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lq--------------------S-~~l~~fPi~~a~f~p-~G~~~ 272 (514)
T KOG2055|consen 215 GITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQ--------------------S-IHLEKFPIQKAEFAP-NGHSV 272 (514)
T ss_pred CceEEEecCCCceEEEecCCCcEEEEEecCccChhhe--------------------e-eeeccCccceeeecC-CCceE
Confidence 44589999998878888888766655544 342111 0 1111122 3566777 554
Q ss_pred EEEEeCCCcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCC
Q 018242 110 LYIADAYFGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPA 189 (359)
Q Consensus 110 l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~ 189 (359)
++.+....-++.||+.+++++.+.. ..+.+...+..+.+++++++|-+. +..|.|+.+...
T Consensus 273 i~~s~rrky~ysyDle~ak~~k~~~-~~g~e~~~~e~FeVShd~~fia~~------------------G~~G~I~lLhak 333 (514)
T KOG2055|consen 273 IFTSGRRKYLYSYDLETAKVTKLKP-PYGVEEKSMERFEVSHDSNFIAIA------------------GNNGHIHLLHAK 333 (514)
T ss_pred EEecccceEEEEeeccccccccccC-CCCcccchhheeEecCCCCeEEEc------------------ccCceEEeehhh
Confidence 4444433458899999998876533 334445577888999999944333 345778888877
Q ss_pred CCcEEEEeCCCCCCceEEEccCCCEEEEEecCCCEEEEEEcCCCCCcceeEeecCCC-CCCceEECCCCCEEEEEecCCC
Q 018242 190 TKQVTVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPG-FPDNIKRSPRGGFWVGIHSRRK 268 (359)
Q Consensus 190 ~~~~~~~~~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~-~p~~i~~d~~G~lwv~~~~~~~ 268 (359)
|+++..-..-.....+++|+.|++.||+++. .+.||+|++..+ .....|.+-++ .-..++.+.+|.++++....+-
T Consensus 334 T~eli~s~KieG~v~~~~fsSdsk~l~~~~~-~GeV~v~nl~~~--~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~Gi 410 (514)
T KOG2055|consen 334 TKELITSFKIEGVVSDFTFSSDSKELLASGG-TGEVYVWNLRQN--SCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGI 410 (514)
T ss_pred hhhhhheeeeccEEeeEEEecCCcEEEEEcC-CceEEEEecCCc--ceEEEEeecCccceeeeeecCCCceEEeccCcce
Confidence 7654321111123478899999997777764 469999998654 33344444222 1234788888985554444442
Q ss_pred ccccccccCCccceeeecCCccceeeeeecccccCcceEEEEECCCCC----------------------EEEEEEccCC
Q 018242 269 GISKLVLSFPWIGNVLIKLPIDIVKIHSSLVKLSGNGGMAMRISEQGN----------------------VLEILEEIGR 326 (359)
Q Consensus 269 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~----------------------~~~~~~~~~g 326 (359)
+.+|+.+.-....-|-|...+.++... ..-+.|++++. ++..|.. .+
T Consensus 411 -----VNIYd~~s~~~s~~PkPik~~dNLtt~-----Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~-~n 479 (514)
T KOG2055|consen 411 -----VNIYDGNSCFASTNPKPIKTVDNLTTA-----ITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPT-SN 479 (514)
T ss_pred -----EEEeccchhhccCCCCchhhhhhhhee-----eeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCC-CC
Confidence 555664444444444444433333322 11223333332 2222222 23
Q ss_pred ceeeceEEEEE--eCCEEEEecCCCCeEEEEcC
Q 018242 327 KMWRSISEVEE--KDGNLWIGSVNMPYAGLYNY 357 (359)
Q Consensus 327 ~~~~~~~~~~~--~~g~l~ig~~~~~~l~~~~~ 357 (359)
.++.-++.+.. .+|.+=+|+- ..++.++++
T Consensus 480 ~~vg~vtc~aFSP~sG~lAvGNe-~grv~l~kL 511 (514)
T KOG2055|consen 480 TKVGHVTCMAFSPNSGYLAVGNE-AGRVHLFKL 511 (514)
T ss_pred CcccceEEEEecCCCceEEeecC-CCceeeEee
Confidence 33445555544 3678888875 677777765
No 32
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=98.95 E-value=3.1e-06 Score=76.94 Aligned_cols=113 Identities=12% Similarity=0.007 Sum_probs=76.7
Q ss_pred CCeeEEecCC-----CEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEEeC----
Q 018242 45 GEGPYTGVSD-----GRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIADA---- 115 (359)
Q Consensus 45 G~~l~~~~~~-----~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~~~---- 115 (359)
+..+|+.... ++|+.+|.++.++. .....+..|+++ +++++..+|++..
T Consensus 12 ~~~v~V~d~~~~~~~~~v~ViD~~~~~v~---------------------g~i~~G~~P~~~-~spDg~~lyva~~~~~R 69 (352)
T TIGR02658 12 ARRVYVLDPGHFAATTQVYTIDGEAGRVL---------------------GMTDGGFLPNPV-VASDGSFFAHASTVYSR 69 (352)
T ss_pred CCEEEEECCcccccCceEEEEECCCCEEE---------------------EEEEccCCCcee-ECCCCCEEEEEeccccc
Confidence 3335554443 78999999887433 222344678886 9998889999976
Q ss_pred -----C-CcEEEEeCCCCeEEEEeecCCC---ccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEE
Q 018242 116 -----Y-FGLLKVGPEGGLATAVATQSEG---IPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKY 186 (359)
Q Consensus 116 -----~-~~i~~~~~~~~~~~~~~~~~~~---~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~ 186 (359)
. +.|..+|..+.+...-....+. .-...++.+++++||+++||++.. ....|..+
T Consensus 70 ~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~----------------p~~~V~Vv 133 (352)
T TIGR02658 70 IARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFS----------------PSPAVGVV 133 (352)
T ss_pred cccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCC----------------CCCEEEEE
Confidence 2 3488999998876432221111 113466789999999999999532 24578999
Q ss_pred eCCCCcEEE
Q 018242 187 DPATKQVTV 195 (359)
Q Consensus 187 d~~~~~~~~ 195 (359)
|..++++..
T Consensus 134 D~~~~kvv~ 142 (352)
T TIGR02658 134 DLEGKAFVR 142 (352)
T ss_pred ECCCCcEEE
Confidence 998876653
No 33
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=98.94 E-value=2.2e-06 Score=79.37 Aligned_cols=196 Identities=14% Similarity=0.134 Sum_probs=114.3
Q ss_pred CCeeEE-ecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcc-eEEEEecCCCeEEEEeCCCcEEEE
Q 018242 45 GEGPYT-GVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRP-LGLCFNKTNGDLYIADAYFGLLKV 122 (359)
Q Consensus 45 G~~l~~-~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~gi~~~~~~g~l~v~~~~~~i~~~ 122 (359)
++++++ ....+.|..+|..+.+... .+.. ...+ .++.+++++..+|+++..+.|.++
T Consensus 5 ~~l~~V~~~~~~~v~viD~~t~~~~~--------------------~i~~-~~~~h~~~~~s~Dgr~~yv~~rdg~vsvi 63 (369)
T PF02239_consen 5 GNLFYVVERGSGSVAVIDGATNKVVA--------------------RIPT-GGAPHAGLKFSPDGRYLYVANRDGTVSVI 63 (369)
T ss_dssp GGEEEEEEGGGTEEEEEETTT-SEEE--------------------EEE--STTEEEEEE-TT-SSEEEEEETTSEEEEE
T ss_pred ccEEEEEecCCCEEEEEECCCCeEEE--------------------EEcC-CCCceeEEEecCCCCEEEEEcCCCeEEEE
Confidence 344554 4456899999998864332 1222 2334 456788866779999866679999
Q ss_pred eCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCCcEEEEe-CC--
Q 018242 123 GPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQVTVLL-GN-- 199 (359)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~-~~-- 199 (359)
|+.++++...... ...+.++++++||+++|+++. ..+.+..+|.++.+..... ..
T Consensus 64 D~~~~~~v~~i~~-----G~~~~~i~~s~DG~~~~v~n~-----------------~~~~v~v~D~~tle~v~~I~~~~~ 121 (369)
T PF02239_consen 64 DLATGKVVATIKV-----GGNPRGIAVSPDGKYVYVANY-----------------EPGTVSVIDAETLEPVKTIPTGGM 121 (369)
T ss_dssp ETTSSSEEEEEE------SSEEEEEEE--TTTEEEEEEE-----------------ETTEEEEEETTT--EEEEEE--EE
T ss_pred ECCcccEEEEEec-----CCCcceEEEcCCCCEEEEEec-----------------CCCceeEeccccccceeecccccc
Confidence 9998875332221 236789999999998888843 2457889998876544322 11
Q ss_pred ---C--CCCceEEEccCCCEEEEEecCCCEEEEEEcCCCCCcceeEeecCCCCCCceEECCCCCEEE-EEecCCCccccc
Q 018242 200 ---L--SFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGGFWV-GIHSRRKGISKL 273 (359)
Q Consensus 200 ---~--~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lwv-~~~~~~~~~~~~ 273 (359)
. ..+.+|..++.+...+++..+.+.|+..|..+.+.. .....+...+|.+..+|++|++++ +.+....
T Consensus 122 ~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~-~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~----- 195 (369)
T PF02239_consen 122 PVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNL-KVTTIKVGRFPHDGGFDPDGRYFLVAANGSNK----- 195 (369)
T ss_dssp -TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCE-EEEEEE--TTEEEEEE-TTSSEEEEEEGGGTE-----
T ss_pred cccccCCCceeEEecCCCCEEEEEEccCCeEEEEEecccccc-ceeeecccccccccccCcccceeeecccccce-----
Confidence 1 123467667777756667777899999987654221 112233456789999999998655 5554442
Q ss_pred ccc-CCccceeeecCCc
Q 018242 274 VLS-FPWIGNVLIKLPI 289 (359)
Q Consensus 274 ~~~-~~~~g~~~~~~~~ 289 (359)
+.. ...++++...++.
T Consensus 196 i~viD~~~~k~v~~i~~ 212 (369)
T PF02239_consen 196 IAVIDTKTGKLVALIDT 212 (369)
T ss_dssp EEEEETTTTEEEEEEE-
T ss_pred eEEEeeccceEEEEeec
Confidence 333 3445555554433
No 34
>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=98.94 E-value=3.9e-08 Score=91.21 Aligned_cols=146 Identities=19% Similarity=0.227 Sum_probs=92.0
Q ss_pred CceEEEccCCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEEeC
Q 018242 36 PESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIADA 115 (359)
Q Consensus 36 p~~i~~~~~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~~~ 115 (359)
-..+.+|..|+ +|+++.+ ++++||..+++..+...+ | .......+..|. .++|||++.
T Consensus 167 V~aLv~D~~g~-lWvgT~d-GL~~fd~~~gkalql~s~---------~----------~dk~I~al~~d~-qg~LWVGTd 224 (671)
T COG3292 167 VVALVFDANGR-LWVGTPD-GLSYFDAGRGKALQLASP---------P----------LDKAINALIADV-QGRLWVGTD 224 (671)
T ss_pred ceeeeeeccCc-EEEecCC-cceEEccccceEEEcCCC---------c----------chhhHHHHHHHh-cCcEEEEec
Confidence 34788888998 9999996 599999998755443211 0 001123455666 899999984
Q ss_pred CCcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCCcEEE
Q 018242 116 YFGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQVTV 195 (359)
Q Consensus 116 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~ 195 (359)
.|+++.+.++.+..-. ....+...+..+..|.+|+ +||+.. .+++++....+.+..
T Consensus 225 -qGv~~~e~~G~~~sn~---~~~lp~~~I~ll~qD~qG~-lWiGTe-------------------nGl~r~~l~rq~Lq~ 280 (671)
T COG3292 225 -QGVYLQEAEGWRASNW---GPMLPSGNILLLVQDAQGE-LWIGTE-------------------NGLWRTRLPRQGLQI 280 (671)
T ss_pred -cceEEEchhhcccccc---CCCCcchheeeeecccCCC-EEEeec-------------------ccceeEecCCCCccc
Confidence 5899998887443222 2334556677788999999 999932 134443333222222
Q ss_pred E----eCCCCCCceEEEccCCCEEEEEecCCCEEEEEEc
Q 018242 196 L----LGNLSFPNGVALSEDGNYILLAETTSCRILRYWL 230 (359)
Q Consensus 196 ~----~~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~ 230 (359)
. ..+....+++..+.||+ ||+.. .+++++|..
T Consensus 281 ~~~~~~l~~S~vnsL~~D~dGs-LWv~t--~~giv~~~~ 316 (671)
T COG3292 281 PLSKMHLGVSTVNSLWLDTDGS-LWVGT--YGGIVRYLT 316 (671)
T ss_pred cccccCCccccccceeeccCCC-Eeeec--cCceEEEec
Confidence 1 12334557888888886 66653 356777764
No 35
>PRK04792 tolB translocation protein TolB; Provisional
Probab=98.91 E-value=1.8e-06 Score=82.36 Aligned_cols=183 Identities=14% Similarity=0.121 Sum_probs=109.1
Q ss_pred eEEEccCCCee-EEecCC--CEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEEe
Q 018242 38 SLAFDALGEGP-YTGVSD--GRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIAD 114 (359)
Q Consensus 38 ~i~~~~~G~~l-~~~~~~--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~~ 114 (359)
...++|||+.+ |++..+ ..|+.+|..+++.+.+. ... +......++|++..|+++.
T Consensus 222 ~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt------------------~~~---g~~~~~~wSPDG~~La~~~ 280 (448)
T PRK04792 222 SPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVT------------------SFP---GINGAPRFSPDGKKLALVL 280 (448)
T ss_pred CceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEec------------------CCC---CCcCCeeECCCCCEEEEEE
Confidence 67899999744 444433 46999999877544332 111 1122467888555576653
Q ss_pred CCC---cEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCC
Q 018242 115 AYF---GLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATK 191 (359)
Q Consensus 115 ~~~---~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~ 191 (359)
..+ .|++++.++++.+.+... . .......++|||++|+++... .....||++|.+++
T Consensus 281 ~~~g~~~Iy~~dl~tg~~~~lt~~-~----~~~~~p~wSpDG~~I~f~s~~---------------~g~~~Iy~~dl~~g 340 (448)
T PRK04792 281 SKDGQPEIYVVDIATKALTRITRH-R----AIDTEPSWHPDGKSLIFTSER---------------GGKPQIYRVNLASG 340 (448)
T ss_pred eCCCCeEEEEEECCCCCeEECccC-C----CCccceEECCCCCEEEEEECC---------------CCCceEEEEECCCC
Confidence 322 499999998877654321 1 123456899999977766221 11236999999887
Q ss_pred cEEEEeCCCCCCceEEEccCCCEEEEEecCCC--EEEEEEcCCCCCcceeEeecCCCCCCceEECCCCC-EEEEEec
Q 018242 192 QVTVLLGNLSFPNGVALSEDGNYILLAETTSC--RILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGG-FWVGIHS 265 (359)
Q Consensus 192 ~~~~~~~~~~~p~gia~~~d~~~l~v~~~~~~--~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~-lwv~~~~ 265 (359)
+.+.+........+.+++|||+.++++....+ .|++++++++. .+.+.. ........++++|+ |+++...
T Consensus 341 ~~~~Lt~~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~---~~~lt~-~~~d~~ps~spdG~~I~~~~~~ 413 (448)
T PRK04792 341 KVSRLTFEGEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGA---MQVLTS-TRLDESPSVAPNGTMVIYSTTY 413 (448)
T ss_pred CEEEEecCCCCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCC---eEEccC-CCCCCCceECCCCCEEEEEEec
Confidence 77655322223345689999998888765443 67778876542 222221 11122346888886 4444443
No 36
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=98.91 E-value=2.6e-06 Score=74.67 Aligned_cols=185 Identities=18% Similarity=0.184 Sum_probs=116.7
Q ss_pred ceEEEccCCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEEeC-
Q 018242 37 ESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIADA- 115 (359)
Q Consensus 37 ~~i~~~~~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~~~- 115 (359)
..+.+.++++.++++..++.|..|+..+.+... .+.........+.+++ +++++++..
T Consensus 55 ~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~--------------------~~~~~~~~i~~~~~~~-~~~~~~~~~~ 113 (289)
T cd00200 55 RDVAASADGTYLASGSSDKTIRLWDLETGECVR--------------------TLTGHTSYVSSVAFSP-DGRILSSSSR 113 (289)
T ss_pred eEEEECCCCCEEEEEcCCCeEEEEEcCcccceE--------------------EEeccCCcEEEEEEcC-CCCEEEEecC
Confidence 388899999778888889999999988642111 1112223456788888 566666655
Q ss_pred CCcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCCcEEE
Q 018242 116 YFGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQVTV 195 (359)
Q Consensus 116 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~ 195 (359)
.+.+..++..+++....... ....+..+.++++++ ++++. ...+.|..+|..+++...
T Consensus 114 ~~~i~~~~~~~~~~~~~~~~----~~~~i~~~~~~~~~~-~l~~~-----------------~~~~~i~i~d~~~~~~~~ 171 (289)
T cd00200 114 DKTIKVWDVETGKCLTTLRG----HTDWVNSVAFSPDGT-FVASS-----------------SQDGTIKLWDLRTGKCVA 171 (289)
T ss_pred CCeEEEEECCCcEEEEEecc----CCCcEEEEEEcCcCC-EEEEE-----------------cCCCcEEEEEccccccce
Confidence 55688899886554332221 123567889999988 55542 124568888886544332
Q ss_pred -EeCCCCCCceEEEccCCCEEEEEecCCCEEEEEEcCCCCCcceeEeecCCCCCCceEECCCCCEEEEEecCC
Q 018242 196 -LLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGGFWVGIHSRR 267 (359)
Q Consensus 196 -~~~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lwv~~~~~~ 267 (359)
+.........++++++++.++++.. ++.|..|++..... ...+.........+.+++++.++++....+
T Consensus 172 ~~~~~~~~i~~~~~~~~~~~l~~~~~-~~~i~i~d~~~~~~--~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 241 (289)
T cd00200 172 TLTGHTGEVNSVAFSPDGEKLLSSSS-DGTIKLWDLSTGKC--LGTLRGHENGVNSVAFSPDGYLLASGSEDG 241 (289)
T ss_pred eEecCccccceEEECCCcCEEEEecC-CCcEEEEECCCCce--ecchhhcCCceEEEEEcCCCcEEEEEcCCC
Confidence 3333335678999999876666654 78899999754311 111212223356688888887777665333
No 37
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=98.90 E-value=3.5e-07 Score=85.63 Aligned_cols=179 Identities=13% Similarity=0.146 Sum_probs=107.8
Q ss_pred EeeCCCCCCceEEEccCCCeeEEecC-CCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecC
Q 018242 28 YQIEGAIGPESLAFDALGEGPYTGVS-DGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKT 106 (359)
Q Consensus 28 ~~~~~~~~p~~i~~~~~G~~l~~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~ 106 (359)
..+.++..|++|++.|||+ +|++.. .|+|+++++.+...+.+...+ .+ ......+.+.||+++|+
T Consensus 24 ~va~GL~~Pw~maflPDG~-llVtER~~G~I~~v~~~~~~~~~~~~l~------------~v-~~~~ge~GLlglal~Pd 89 (454)
T TIGR03606 24 VLLSGLNKPWALLWGPDNQ-LWVTERATGKILRVNPETGEVKVVFTLP------------EI-VNDAQHNGLLGLALHPD 89 (454)
T ss_pred EEECCCCCceEEEEcCCCe-EEEEEecCCEEEEEeCCCCceeeeecCC------------ce-eccCCCCceeeEEECCC
Confidence 3445699999999999998 777776 599999987665332221110 00 00112355789999863
Q ss_pred ------CCeEEEEeC----------CCcEEEEeCCC--Ce---EEEEeecCCCccccccceEEEeCCCCEEEEEeCCCcc
Q 018242 107 ------NGDLYIADA----------YFGLLKVGPEG--GL---ATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQF 165 (359)
Q Consensus 107 ------~g~l~v~~~----------~~~i~~~~~~~--~~---~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~ 165 (359)
++.||++.. ...|.|+..+. .. .+.+....+....+.-..|+++|||. |||+.-....
T Consensus 90 F~~~~~n~~lYvsyt~~~~~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~GgrI~FgPDG~-LYVs~GD~g~ 168 (454)
T TIGR03606 90 FMQEKGNPYVYISYTYKNGDKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNGGRLVFGPDGK-IYYTIGEQGR 168 (454)
T ss_pred ccccCCCcEEEEEEeccCCCCCccCCcEEEEEEecCCCCccccceEEEecCCCCCCcCCceEEECCCCc-EEEEECCCCC
Confidence 457888741 23587876542 11 12232222222234556799999999 9998433210
Q ss_pred c------ccccee------ee---eecCCCceEEEEeCCCC-----------cEEEEeCCCCCCceEEEccCCCEEEEEe
Q 018242 166 Q------RRNHIS------VI---LSGDKTGRLMKYDPATK-----------QVTVLLGNLSFPNGVALSEDGNYILLAE 219 (359)
Q Consensus 166 ~------~~~~~~------~~---~~~~~~g~v~~~d~~~~-----------~~~~~~~~~~~p~gia~~~d~~~l~v~~ 219 (359)
. ...... .. ......|+|+|+++++. ..+.+..+...|.+++|+|+++ ||+++
T Consensus 169 ~~~~n~~~~~~aQ~~~~~~~~~~~d~~~~~GkILRin~DGsiP~dNPf~~g~~~eIyA~G~RNp~Gla~dp~G~-Lw~~e 247 (454)
T TIGR03606 169 NQGANFFLPNQAQHTPTQQELNGKDYHAYMGKVLRLNLDGSIPKDNPSINGVVSHIFTYGHRNPQGLAFTPDGT-LYASE 247 (454)
T ss_pred CCcccccCcchhccccccccccccCcccCceEEEEEcCCCCCCCCCCccCCCcceEEEEeccccceeEECCCCC-EEEEe
Confidence 0 000000 00 11235689999999852 1234556778899999999765 89988
Q ss_pred cCC
Q 018242 220 TTS 222 (359)
Q Consensus 220 ~~~ 222 (359)
...
T Consensus 248 ~Gp 250 (454)
T TIGR03606 248 QGP 250 (454)
T ss_pred cCC
Confidence 665
No 38
>PRK02889 tolB translocation protein TolB; Provisional
Probab=98.89 E-value=2.7e-06 Score=80.78 Aligned_cols=183 Identities=13% Similarity=0.108 Sum_probs=107.5
Q ss_pred eEEEccCCCeeEE-ecC--CCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEEe
Q 018242 38 SLAFDALGEGPYT-GVS--DGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIAD 114 (359)
Q Consensus 38 ~i~~~~~G~~l~~-~~~--~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~~ 114 (359)
+..++|||+.++. +.. ...|+.+|..+++...+. ...+......++|++..|+++.
T Consensus 200 ~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~---------------------~~~g~~~~~~~SPDG~~la~~~ 258 (427)
T PRK02889 200 SPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVA---------------------NFKGSNSAPAWSPDGRTLAVAL 258 (427)
T ss_pred cceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEee---------------------cCCCCccceEECCCCCEEEEEE
Confidence 6789999985544 332 246999999877544332 1111223567888555666543
Q ss_pred CCC---cEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCC
Q 018242 115 AYF---GLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATK 191 (359)
Q Consensus 115 ~~~---~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~ 191 (359)
..+ .|+.++.+++..+.+.. .. .......++|||++|+++... .....||.++.+++
T Consensus 259 ~~~g~~~Iy~~d~~~~~~~~lt~-~~----~~~~~~~wSpDG~~l~f~s~~---------------~g~~~Iy~~~~~~g 318 (427)
T PRK02889 259 SRDGNSQIYTVNADGSGLRRLTQ-SS----GIDTEPFFSPDGRSIYFTSDR---------------GGAPQIYRMPASGG 318 (427)
T ss_pred ccCCCceEEEEECCCCCcEECCC-CC----CCCcCeEEcCCCCEEEEEecC---------------CCCcEEEEEECCCC
Confidence 322 48889988776554422 11 122346899999977665211 11236888887766
Q ss_pred cEEEEeCCCCCCceEEEccCCCEEEEEecCC--CEEEEEEcCCCCCcceeEeecCCCCCCceEECCCCC-EEEEEec
Q 018242 192 QVTVLLGNLSFPNGVALSEDGNYILLAETTS--CRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGG-FWVGIHS 265 (359)
Q Consensus 192 ~~~~~~~~~~~p~gia~~~d~~~l~v~~~~~--~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~-lwv~~~~ 265 (359)
..+.+..........+++|||+.++++...+ ..|+++++.+.. .+.+.. ........++++|+ |+++...
T Consensus 319 ~~~~lt~~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~---~~~lt~-~~~~~~p~~spdg~~l~~~~~~ 391 (427)
T PRK02889 319 AAQRVTFTGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQ---VTALTD-TTRDESPSFAPNGRYILYATQQ 391 (427)
T ss_pred ceEEEecCCCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCC---eEEccC-CCCccCceECCCCCEEEEEEec
Confidence 6655432222234578999999877665443 368888876542 222222 12235678889997 4444443
No 39
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=98.88 E-value=1.7e-06 Score=73.55 Aligned_cols=186 Identities=11% Similarity=0.137 Sum_probs=123.1
Q ss_pred CCceEEEccCCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEEe
Q 018242 35 GPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIAD 114 (359)
Q Consensus 35 ~p~~i~~~~~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~~ 114 (359)
.-.+++..+||...+.+..++.++.||..+++-+. .+........++++++++..+.-+.
T Consensus 65 ~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~~t~--------------------~f~GH~~dVlsva~s~dn~qivSGS 124 (315)
T KOG0279|consen 65 FVSDVVLSSDGNFALSASWDGTLRLWDLATGESTR--------------------RFVGHTKDVLSVAFSTDNRQIVSGS 124 (315)
T ss_pred EecceEEccCCceEEeccccceEEEEEecCCcEEE--------------------EEEecCCceEEEEecCCCceeecCC
Confidence 34578889999977788999999999998863221 3334445578999999555554444
Q ss_pred CCCcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCC-CEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCCcE
Q 018242 115 AYFGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQST-GIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQV 193 (359)
Q Consensus 115 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g-~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~ 193 (359)
..+.|..++..+...-.+.. ......++.+.+.|+. + .++... +.+..|-.+|.++-++
T Consensus 125 rDkTiklwnt~g~ck~t~~~---~~~~~WVscvrfsP~~~~-p~Ivs~----------------s~DktvKvWnl~~~~l 184 (315)
T KOG0279|consen 125 RDKTIKLWNTLGVCKYTIHE---DSHREWVSCVRFSPNESN-PIIVSA----------------SWDKTVKVWNLRNCQL 184 (315)
T ss_pred CcceeeeeeecccEEEEEec---CCCcCcEEEEEEcCCCCC-cEEEEc----------------cCCceEEEEccCCcch
Confidence 44568888888765433332 1114578889999985 5 666532 3456788888876555
Q ss_pred EE-EeCCCCCCceEEEccCCCEEEEEecCCCEEEEEEcCCCCCcceeEeecCCCCCCceEECCCCCEEEEEec
Q 018242 194 TV-LLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGGFWVGIHS 265 (359)
Q Consensus 194 ~~-~~~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lwv~~~~ 265 (359)
+. +..+....+.++++|||. +..+...++.++.||++..+. ...+ +.....+.++|.| .++|.+.--
T Consensus 185 ~~~~~gh~~~v~t~~vSpDGs-lcasGgkdg~~~LwdL~~~k~--lysl-~a~~~v~sl~fsp-nrywL~~at 252 (315)
T KOG0279|consen 185 RTTFIGHSGYVNTVTVSPDGS-LCASGGKDGEAMLWDLNEGKN--LYSL-EAFDIVNSLCFSP-NRYWLCAAT 252 (315)
T ss_pred hhccccccccEEEEEECCCCC-EEecCCCCceEEEEEccCCce--eEec-cCCCeEeeEEecC-CceeEeecc
Confidence 43 233344568899999998 777788889999999876422 1111 1112246689987 557775543
No 40
>PRK04922 tolB translocation protein TolB; Provisional
Probab=98.85 E-value=3.4e-06 Score=80.30 Aligned_cols=182 Identities=13% Similarity=0.091 Sum_probs=107.8
Q ss_pred eEEEccCCCeeE-EecC--CCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEEe
Q 018242 38 SLAFDALGEGPY-TGVS--DGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIAD 114 (359)
Q Consensus 38 ~i~~~~~G~~l~-~~~~--~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~~ 114 (359)
++.++|||+.++ ++.. ...|+++|..+++.+.+. ...+......+++++..++++.
T Consensus 208 ~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~---------------------~~~g~~~~~~~SpDG~~l~~~~ 266 (433)
T PRK04922 208 SPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELVA---------------------SFRGINGAPSFSPDGRRLALTL 266 (433)
T ss_pred cccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEec---------------------cCCCCccCceECCCCCEEEEEE
Confidence 567889997444 4432 246999999877544332 1111123467888555666553
Q ss_pred C-CC--cEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCC
Q 018242 115 A-YF--GLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATK 191 (359)
Q Consensus 115 ~-~~--~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~ 191 (359)
. .+ .|+.++.++++.+.+... . .......++|||++++++... .....||.++.+++
T Consensus 267 s~~g~~~Iy~~d~~~g~~~~lt~~-~----~~~~~~~~spDG~~l~f~sd~---------------~g~~~iy~~dl~~g 326 (433)
T PRK04922 267 SRDGNPEIYVMDLGSRQLTRLTNH-F----GIDTEPTWAPDGKSIYFTSDR---------------GGRPQIYRVAASGG 326 (433)
T ss_pred eCCCCceEEEEECCCCCeEECccC-C----CCccceEECCCCCEEEEEECC---------------CCCceEEEEECCCC
Confidence 2 22 499999998876654321 1 122357899999967666211 11235999998777
Q ss_pred cEEEEeCCCCCCceEEEccCCCEEEEEecCC--CEEEEEEcCCCCCcceeEeecCCCCCCceEECCCCC-EEEEEe
Q 018242 192 QVTVLLGNLSFPNGVALSEDGNYILLAETTS--CRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGG-FWVGIH 264 (359)
Q Consensus 192 ~~~~~~~~~~~p~gia~~~d~~~l~v~~~~~--~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~-lwv~~~ 264 (359)
+.+.+..........+++|||+.++++...+ ..|+.+++.+.. .+.+.. ........++++|+ ++++..
T Consensus 327 ~~~~lt~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~---~~~Lt~-~~~~~~p~~spdG~~i~~~s~ 398 (433)
T PRK04922 327 SAERLTFQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGS---VRTLTP-GSLDESPSFAPNGSMVLYATR 398 (433)
T ss_pred CeEEeecCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCC---eEECCC-CCCCCCceECCCCCEEEEEEe
Confidence 7665433223344689999999887765443 368888875542 222222 11234568889997 444443
No 41
>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=98.83 E-value=6e-08 Score=89.98 Aligned_cols=139 Identities=20% Similarity=0.273 Sum_probs=85.3
Q ss_pred ceEEEEecCCCeEEEEeCCCcEEEEeCCCCeEEEEeecCCCccc-cccceEEEeCCCCEEEEEeCCCccccccceeeeee
Q 018242 98 PLGLCFNKTNGDLYIADAYFGLLKVGPEGGLATAVATQSEGIPF-RFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILS 176 (359)
Q Consensus 98 p~gi~~~~~~g~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~ 176 (359)
...+.+|. .|++||++ .+|+++|+..+++.-++... +. ..++.++.|-+|+ +||++
T Consensus 167 V~aLv~D~-~g~lWvgT-~dGL~~fd~~~gkalql~s~----~~dk~I~al~~d~qg~-LWVGT---------------- 223 (671)
T COG3292 167 VVALVFDA-NGRLWVGT-PDGLSYFDAGRGKALQLASP----PLDKAINALIADVQGR-LWVGT---------------- 223 (671)
T ss_pred ceeeeeec-cCcEEEec-CCcceEEccccceEEEcCCC----cchhhHHHHHHHhcCc-EEEEe----------------
Confidence 34678888 99999997 46899999998886554331 22 4677889999999 99993
Q ss_pred cCCCceEEEEeCCCCcEEEEeCCCCCCce--EEEccCCCEEEEEecCCCEEEEEEcCCCCCcceeEeecCCC--CCCceE
Q 018242 177 GDKTGRLMKYDPATKQVTVLLGNLSFPNG--VALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPG--FPDNIK 252 (359)
Q Consensus 177 ~~~~g~v~~~d~~~~~~~~~~~~~~~p~g--ia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~--~p~~i~ 252 (359)
+.+|++.++.+.++.- .+...|.+ ..+-.|.+.-+|..+.+ +++++......+. ........+ ....+.
T Consensus 224 ---dqGv~~~e~~G~~~sn--~~~~lp~~~I~ll~qD~qG~lWiGTen-Gl~r~~l~rq~Lq-~~~~~~~l~~S~vnsL~ 296 (671)
T COG3292 224 ---DQGVYLQEAEGWRASN--WGPMLPSGNILLLVQDAQGELWIGTEN-GLWRTRLPRQGLQ-IPLSKMHLGVSTVNSLW 296 (671)
T ss_pred ---ccceEEEchhhccccc--cCCCCcchheeeeecccCCCEEEeecc-cceeEecCCCCcc-ccccccCCcccccccee
Confidence 2369999887633322 12223332 22223433345555553 5777665432211 000111111 235688
Q ss_pred ECCCCCEEEEEecC
Q 018242 253 RSPRGGFWVGIHSR 266 (359)
Q Consensus 253 ~d~~G~lwv~~~~~ 266 (359)
.|.+|++|+++...
T Consensus 297 ~D~dGsLWv~t~~g 310 (671)
T COG3292 297 LDTDGSLWVGTYGG 310 (671)
T ss_pred eccCCCEeeeccCc
Confidence 89999999999864
No 42
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=98.83 E-value=2.3e-05 Score=67.84 Aligned_cols=207 Identities=15% Similarity=0.104 Sum_probs=125.6
Q ss_pred CCCCceEEEccCCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEE
Q 018242 33 AIGPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYI 112 (359)
Q Consensus 33 ~~~p~~i~~~~~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v 112 (359)
...+.+|.++++|..+.+++.+..|..||-..+.....- .....+ +.-++|......+..
T Consensus 14 ~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti------------------~skkyG--~~~~~Fth~~~~~i~ 73 (311)
T KOG1446|consen 14 NGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTI------------------NSKKYG--VDLACFTHHSNTVIH 73 (311)
T ss_pred CCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEe------------------eccccc--ccEEEEecCCceEEE
Confidence 346789999999998888888889999998766432211 111111 233445443555555
Q ss_pred EeC--CCcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCC
Q 018242 113 ADA--YFGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPAT 190 (359)
Q Consensus 113 ~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~ 190 (359)
+.. ...|..++..+++-.++. .+ ....++.|.+.|-+. .+++. +.+..|..||...
T Consensus 74 sStk~d~tIryLsl~dNkylRYF---~G-H~~~V~sL~~sP~~d-~FlS~-----------------S~D~tvrLWDlR~ 131 (311)
T KOG1446|consen 74 SSTKEDDTIRYLSLHDNKYLRYF---PG-HKKRVNSLSVSPKDD-TFLSS-----------------SLDKTVRLWDLRV 131 (311)
T ss_pred ccCCCCCceEEEEeecCceEEEc---CC-CCceEEEEEecCCCC-eEEec-----------------ccCCeEEeeEecC
Confidence 443 234777777766543322 11 224678999999998 88883 3355788899875
Q ss_pred CcEEEEeCCCCCCceEEEccCCCEEEEEecCCCEEEEEEcCCCCCcceeEeec-CC--CCCCceEECCCCC-EEEEEecC
Q 018242 191 KQVTVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQ-LP--GFPDNIKRSPRGG-FWVGIHSR 266 (359)
Q Consensus 191 ~~~~~~~~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~-~~--~~p~~i~~d~~G~-lwv~~~~~ 266 (359)
.+..-+. ....+...|++|+|- ++.+...++.|..||+..=..+..+.+.- .+ ..=.+|.++++|+ |.+++..+
T Consensus 132 ~~cqg~l-~~~~~pi~AfDp~GL-ifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s 209 (311)
T KOG1446|consen 132 KKCQGLL-NLSGRPIAAFDPEGL-IFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNAS 209 (311)
T ss_pred CCCceEE-ecCCCcceeECCCCc-EEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCC
Confidence 5544332 234556789999984 56666666699999985322233333321 11 1124589999997 55566543
Q ss_pred CCccccccccC-CccceeeecCCc
Q 018242 267 RKGISKLVLSF-PWIGNVLIKLPI 289 (359)
Q Consensus 267 ~~~~~~~~~~~-~~~g~~~~~~~~ 289 (359)
. +... ..+|.+...+..
T Consensus 210 ~------~~~lDAf~G~~~~tfs~ 227 (311)
T KOG1446|consen 210 F------IYLLDAFDGTVKSTFSG 227 (311)
T ss_pred c------EEEEEccCCcEeeeEee
Confidence 2 3333 346666555443
No 43
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=98.83 E-value=1.7e-06 Score=77.24 Aligned_cols=197 Identities=20% Similarity=0.235 Sum_probs=114.6
Q ss_pred CceEEEccCCCeeEEecCC------------CEEEEEEcCCcce-EEEeecCCCCCCCCCCcccccccccccCCcceEEE
Q 018242 36 PESLAFDALGEGPYTGVSD------------GRIIKWHQDQRRW-LHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLC 102 (359)
Q Consensus 36 p~~i~~~~~G~~l~~~~~~------------~~i~~~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~ 102 (359)
..++.+|+.|++|++++.. -+|+.||+.+++. +++..+. ...........++
T Consensus 3 V~~v~iD~~~rLWVlD~G~~~~~~~~~~~~~pKLv~~Dl~t~~li~~~~~p~---------------~~~~~~s~lndl~ 67 (287)
T PF03022_consen 3 VQRVQIDECGRLWVLDSGRPNGLQPPKQVCPPKLVAFDLKTNQLIRRYPFPP---------------DIAPPDSFLNDLV 67 (287)
T ss_dssp EEEEEE-TTSEEEEEE-CCHSSSSTTGHTS--EEEEEETTTTCEEEEEE--C---------------CCS-TCGGEEEEE
T ss_pred ccEEEEcCCCCEEEEeCCCcCCCCCCCCCCCcEEEEEECCCCcEEEEEECCh---------------HHcccccccceEE
Confidence 4578899999955566542 3899999999864 3443221 1111223345788
Q ss_pred EecCC-----CeEEEEeCC-CcEEEEeCCCCeEEEEeecC-C-----------Cccc---cccceEEEeC---CCCEEEE
Q 018242 103 FNKTN-----GDLYIADAY-FGLLKVGPEGGLATAVATQS-E-----------GIPF---RFCNSLDIDQ---STGIIYF 158 (359)
Q Consensus 103 ~~~~~-----g~l~v~~~~-~~i~~~~~~~~~~~~~~~~~-~-----------~~~~---~~~~~l~~d~---~g~~l~v 158 (359)
+|..+ +.+|+++.. .+|+.+|..+++..++.... . +..+ ..+.+++.++ +|+.||+
T Consensus 68 VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf 147 (287)
T PF03022_consen 68 VDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSFSPDPDAGPFTIGGESFQWPDGIFGIALSPISPDGRWLYF 147 (287)
T ss_dssp EECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGCTTS-SSEEEEETTEEEEETTSEEEEEE-TTSTTS-EEEE
T ss_pred EEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCcceeccccceeccCceEecCCCccccccCCCCCCccEEEE
Confidence 88633 579999876 47999999998865544321 1 0011 1244555544 6777888
Q ss_pred EeCCCccccccceeeeeecCCCceEEEEeCCC-------------CcEEEEeCCCCCCceEEEccCCCEEEEEecCCCEE
Q 018242 159 TDSSSQFQRRNHISVILSGDKTGRLMKYDPAT-------------KQVTVLLGNLSFPNGVALSEDGNYILLAETTSCRI 225 (359)
Q Consensus 159 ~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~-------------~~~~~~~~~~~~p~gia~~~d~~~l~v~~~~~~~i 225 (359)
.-..+ ..+|++..+- ..++.+-.......|++++++|. ||+++...+.|
T Consensus 148 ~~lss-----------------~~ly~v~T~~L~~~~~~~~~~~~~~v~~lG~k~~~s~g~~~D~~G~-ly~~~~~~~aI 209 (287)
T PF03022_consen 148 HPLSS-----------------RKLYRVPTSVLRDPSLSDAQALASQVQDLGDKGSQSDGMAIDPNGN-LYFTDVEQNAI 209 (287)
T ss_dssp EETT------------------SEEEEEEHHHHCSTT--HHH-HHHT-EEEEE---SECEEEEETTTE-EEEEECCCTEE
T ss_pred EeCCC-----------------CcEEEEEHHHhhCccccccccccccceeccccCCCCceEEECCCCc-EEEecCCCCeE
Confidence 74331 1355443210 01222211123457999999775 99999999999
Q ss_pred EEEEcCCCCC-cceeEeec-CC--CCCCceEECC--CCCEEEEEec
Q 018242 226 LRYWLKTSKA-GTIEIVAQ-LP--GFPDNIKRSP--RGGFWVGIHS 265 (359)
Q Consensus 226 ~~~~~~~~~~-~~~~~~~~-~~--~~p~~i~~d~--~G~lwv~~~~ 265 (359)
.+|+.+.+.. ...+.+.. .. -.|+++.+++ +|.||+.+..
T Consensus 210 ~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i~~~~~g~L~v~snr 255 (287)
T PF03022_consen 210 GCWDPDGPYTPENFEILAQDPRTLQWPDGLKIDPEGDGYLWVLSNR 255 (287)
T ss_dssp EEEETTTSB-GCCEEEEEE-CC-GSSEEEEEE-T--TS-EEEEE-S
T ss_pred EEEeCCCCcCccchheeEEcCceeeccceeeeccccCceEEEEECc
Confidence 9999765422 23444443 22 4699999999 9999998865
No 44
>PRK03629 tolB translocation protein TolB; Provisional
Probab=98.81 E-value=4.6e-06 Score=79.15 Aligned_cols=180 Identities=12% Similarity=0.082 Sum_probs=108.3
Q ss_pred ceEEEccCCCeeE-Eec--CCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEE
Q 018242 37 ESLAFDALGEGPY-TGV--SDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIA 113 (359)
Q Consensus 37 ~~i~~~~~G~~l~-~~~--~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~ 113 (359)
..+.++|||+.+. ++. ....|+.++..+++.+.+. ... +......++|++..|+++
T Consensus 202 ~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~------------------~~~---~~~~~~~~SPDG~~La~~ 260 (429)
T PRK03629 202 MSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVA------------------SFP---RHNGAPAFSPDGSKLAFA 260 (429)
T ss_pred eeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEcc------------------CCC---CCcCCeEECCCCCEEEEE
Confidence 3788999997443 433 2357899998876443321 111 112246789955566665
Q ss_pred eCCC---cEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCC
Q 018242 114 DAYF---GLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPAT 190 (359)
Q Consensus 114 ~~~~---~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~ 190 (359)
.... .|+.+|.++++.+.+... . .......++|||++|+++... ...-.||.++.++
T Consensus 261 ~~~~g~~~I~~~d~~tg~~~~lt~~-~----~~~~~~~wSPDG~~I~f~s~~---------------~g~~~Iy~~d~~~ 320 (429)
T PRK03629 261 LSKTGSLNLYVMDLASGQIRQVTDG-R----SNNTEPTWFPDSQNLAYTSDQ---------------AGRPQVYKVNING 320 (429)
T ss_pred EcCCCCcEEEEEECCCCCEEEccCC-C----CCcCceEECCCCCEEEEEeCC---------------CCCceEEEEECCC
Confidence 3322 499999998877655321 1 134567899999977555211 1123699999987
Q ss_pred CcEEEEeCCCCCCceEEEccCCCEEEEEecCC--CEEEEEEcCCCCCcceeEeecCCCCCCceEECCCCCEEE
Q 018242 191 KQVTVLLGNLSFPNGVALSEDGNYILLAETTS--CRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGGFWV 261 (359)
Q Consensus 191 ~~~~~~~~~~~~p~gia~~~d~~~l~v~~~~~--~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lwv 261 (359)
+..+.+..........+++|||+.++++...+ ..|+.+++++.. .+.+.. ...-....+++||+..+
T Consensus 321 g~~~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~---~~~Lt~-~~~~~~p~~SpDG~~i~ 389 (429)
T PRK03629 321 GAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGG---VQVLTD-TFLDETPSIAPNGTMVI 389 (429)
T ss_pred CCeEEeecCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCC---eEEeCC-CCCCCCceECCCCCEEE
Confidence 77665543333345678999999877765443 458888876542 222222 11123467889997444
No 45
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=98.80 E-value=8.2e-07 Score=76.46 Aligned_cols=207 Identities=19% Similarity=0.143 Sum_probs=106.9
Q ss_pred CCCchhHHHHHHHHHHHhh----hcCC-------CEEEEeeCCCCCCceEEEccCCCeeEEecCC---CEEEEEEcCCcc
Q 018242 1 MNSSLSFIAKSIVIFLFIN----SSTQ-------GVVQYQIEGAIGPESLAFDALGEGPYTGVSD---GRIIKWHQDQRR 66 (359)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~----~~~~-------~~~~~~~~~~~~p~~i~~~~~G~~l~~~~~~---~~i~~~d~~~~~ 66 (359)
||.++.+++++++++.... +.++ .+.+++.+.-..-+|+.+..+|. +|-++.. ..|.++|+.+++
T Consensus 1 ~~~~l~~~~~l~la~~~~~~~~~~~~~~~~~~~~vv~~ypHd~~aFTQGL~~~~~g~-LyESTG~yG~S~l~~~d~~tg~ 79 (264)
T PF05096_consen 1 MKLSLRTLALLALAAARAPAAPVSAAPAPVYSYEVVETYPHDPTAFTQGLEFLDDGT-LYESTGLYGQSSLRKVDLETGK 79 (264)
T ss_dssp -----------------------------EEEEEEEEEEE--TT-EEEEEEEEETTE-EEEEECSTTEEEEEEEETTTSS
T ss_pred CcccchhhHHHHHHhccccccccccCCCceeeeEEEEECCCCCcccCccEEecCCCE-EEEeCCCCCcEEEEEEECCCCc
Confidence 7777777666555543221 1111 13366777777788999988888 8876643 488999999987
Q ss_pred eEEEeecCCCCCC--CCCCcccccccc--------------------cccCCcceEEEEecCCCeEEEEeCCCcEEEEeC
Q 018242 67 WLHFARTSPNRDG--CEGAYEYDHAAK--------------------EHICGRPLGLCFNKTNGDLYIADAYFGLLKVGP 124 (359)
Q Consensus 67 ~~~~~~~~~~~~~--~~~~~~~~~~~~--------------------~~~~~~p~gi~~~~~~g~l~v~~~~~~i~~~~~ 124 (359)
.......++..++ +.--. .++..+ -...++..||+.+ +..||+++....|+.+|+
T Consensus 80 ~~~~~~l~~~~FgEGit~~~-d~l~qLTWk~~~~f~yd~~tl~~~~~~~y~~EGWGLt~d--g~~Li~SDGS~~L~~~dP 156 (264)
T PF05096_consen 80 VLQSVPLPPRYFGEGITILG-DKLYQLTWKEGTGFVYDPNTLKKIGTFPYPGEGWGLTSD--GKRLIMSDGSSRLYFLDP 156 (264)
T ss_dssp EEEEEE-TTT--EEEEEEET-TEEEEEESSSSEEEEEETTTTEEEEEEE-SSS--EEEEC--SSCEEEE-SSSEEEEE-T
T ss_pred EEEEEECCccccceeEEEEC-CEEEEEEecCCeEEEEccccceEEEEEecCCcceEEEcC--CCEEEEECCccceEEECC
Confidence 6654444333221 00000 000000 0112345677744 678999887778999999
Q ss_pred CCCeEEEEee-cCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCCcEEEEeC-----
Q 018242 125 EGGLATAVAT-QSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQVTVLLG----- 198 (359)
Q Consensus 125 ~~~~~~~~~~-~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~----- 198 (359)
++-+...... ...+.+....|.|-.- +|. ||.-... ...|.++||++|++.....
T Consensus 157 ~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~-IyANVW~-----------------td~I~~Idp~tG~V~~~iDls~L~ 217 (264)
T PF05096_consen 157 ETFKEVRTIQVTDNGRPVSNLNELEYI-NGK-IYANVWQ-----------------TDRIVRIDPETGKVVGWIDLSGLR 217 (264)
T ss_dssp TT-SEEEEEE-EETTEE---EEEEEEE-TTE-EEEEETT-----------------SSEEEEEETTT-BEEEEEE-HHHH
T ss_pred cccceEEEEEEEECCEECCCcEeEEEE-cCE-EEEEeCC-----------------CCeEEEEeCCCCeEEEEEEhhHhh
Confidence 8754432222 2344566677787664 676 8887543 2379999999999875421
Q ss_pred ------C-----CCCCceEEEccCCCEEEEEecCCCEEEEEEc
Q 018242 199 ------N-----LSFPNGVALSEDGNYILLAETTSCRILRYWL 230 (359)
Q Consensus 199 ------~-----~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~ 230 (359)
. ..--||||++++.+.+|+++-.=..++.+.+
T Consensus 218 ~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK~Wp~lyeV~l 260 (264)
T PF05096_consen 218 PEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGKLWPKLYEVKL 260 (264)
T ss_dssp HHHTSTTST--TTS-EEEEEEETTTTEEEEEETT-SEEEEEEE
T ss_pred hcccccccccccCCeeEeEeEeCCCCEEEEEeCCCCceEEEEE
Confidence 0 1124899999999999999876667776654
No 46
>PRK05137 tolB translocation protein TolB; Provisional
Probab=98.80 E-value=1.4e-05 Score=76.22 Aligned_cols=143 Identities=14% Similarity=0.072 Sum_probs=86.6
Q ss_pred ceEEEEecCCCeEEEEeCC---CcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeee
Q 018242 98 PLGLCFNKTNGDLYIADAY---FGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVI 174 (359)
Q Consensus 98 p~gi~~~~~~g~l~v~~~~---~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~ 174 (359)
.....++|++..|...... ..|+.++..+++.+.+.. .. .......++|||++|.++...
T Consensus 204 v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l~~-~~----g~~~~~~~SPDG~~la~~~~~------------ 266 (435)
T PRK05137 204 VLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRELVGN-FP----GMTFAPRFSPDGRKVVMSLSQ------------ 266 (435)
T ss_pred eEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEEeec-CC----CcccCcEECCCCCEEEEEEec------------
Confidence 3467788855555554322 359999999887655432 11 123457899999977666221
Q ss_pred eecCCCceEEEEeCCCCcEEEEeCCCCCCceEEEccCCCEEEEEecCC--CEEEEEEcCCCCCcceeEeecCCCCCCceE
Q 018242 175 LSGDKTGRLMKYDPATKQVTVLLGNLSFPNGVALSEDGNYILLAETTS--CRILRYWLKTSKAGTIEIVAQLPGFPDNIK 252 (359)
Q Consensus 175 ~~~~~~g~v~~~d~~~~~~~~~~~~~~~p~gia~~~d~~~l~v~~~~~--~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~ 252 (359)
.....||.+|.+++..+.+..........+++|||+.++++.... ..|+++++++... +.+....+......
T Consensus 267 ---~g~~~Iy~~d~~~~~~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~---~~lt~~~~~~~~~~ 340 (435)
T PRK05137 267 ---GGNTDIYTMDLRSGTTTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNP---RRISFGGGRYSTPV 340 (435)
T ss_pred ---CCCceEEEEECCCCceEEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCe---EEeecCCCcccCeE
Confidence 123469999998887766543333345678999999777665332 4789888765322 22222122234467
Q ss_pred ECCCCC-EEEEE
Q 018242 253 RSPRGG-FWVGI 263 (359)
Q Consensus 253 ~d~~G~-lwv~~ 263 (359)
++++|+ |++..
T Consensus 341 ~SpdG~~ia~~~ 352 (435)
T PRK05137 341 WSPRGDLIAFTK 352 (435)
T ss_pred ECCCCCEEEEEE
Confidence 888886 44444
No 47
>PRK05137 tolB translocation protein TolB; Provisional
Probab=98.78 E-value=4.4e-06 Score=79.55 Aligned_cols=183 Identities=11% Similarity=0.054 Sum_probs=110.2
Q ss_pred ceEEEccCCCee-EEecC--CCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEE
Q 018242 37 ESLAFDALGEGP-YTGVS--DGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIA 113 (359)
Q Consensus 37 ~~i~~~~~G~~l-~~~~~--~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~ 113 (359)
....++|||+.+ |++.. +..|+.+|..+++.+.+. ...+......++|++..|+++
T Consensus 205 ~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l~---------------------~~~g~~~~~~~SPDG~~la~~ 263 (435)
T PRK05137 205 LTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRELVG---------------------NFPGMTFAPRFSPDGRKVVMS 263 (435)
T ss_pred EeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEEee---------------------cCCCcccCcEECCCCCEEEEE
Confidence 367789999744 44432 368999999887544332 111122356688855556555
Q ss_pred eCC---CcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCC
Q 018242 114 DAY---FGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPAT 190 (359)
Q Consensus 114 ~~~---~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~ 190 (359)
... ..|+.++.++++.+.+.. .. .......++|||++|+++... .....|+.+|.++
T Consensus 264 ~~~~g~~~Iy~~d~~~~~~~~Lt~-~~----~~~~~~~~spDG~~i~f~s~~---------------~g~~~Iy~~d~~g 323 (435)
T PRK05137 264 LSQGGNTDIYTMDLRSGTTTRLTD-SP----AIDTSPSYSPDGSQIVFESDR---------------SGSPQLYVMNADG 323 (435)
T ss_pred EecCCCceEEEEECCCCceEEccC-CC----CccCceeEcCCCCEEEEEECC---------------CCCCeEEEEECCC
Confidence 332 249999999887765432 11 123357899999977766321 1123699999887
Q ss_pred CcEEEEeCCCCCCceEEEccCCCEEEEEecCC--CEEEEEEcCCCCCcceeEeecCCCCCCceEECCCCC-EEEEEe
Q 018242 191 KQVTVLLGNLSFPNGVALSEDGNYILLAETTS--CRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGG-FWVGIH 264 (359)
Q Consensus 191 ~~~~~~~~~~~~p~gia~~~d~~~l~v~~~~~--~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~-lwv~~~ 264 (359)
+..+.+..........+++|||+.+++..... ..|+.+++++.. .+.+.. ........++++|+ |+++..
T Consensus 324 ~~~~~lt~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~---~~~lt~-~~~~~~p~~spDG~~i~~~~~ 396 (435)
T PRK05137 324 SNPRRISFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSG---ERILTS-GFLVEGPTWAPNGRVIMFFRQ 396 (435)
T ss_pred CCeEEeecCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCc---eEeccC-CCCCCCCeECCCCCEEEEEEc
Confidence 77766543322234578999999887765443 468888865432 222222 12245678899997 444443
No 48
>PRK00178 tolB translocation protein TolB; Provisional
Probab=98.78 E-value=1.1e-05 Score=76.69 Aligned_cols=184 Identities=12% Similarity=0.126 Sum_probs=109.5
Q ss_pred ceEEEccCCCee-EEecCC--CEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEE
Q 018242 37 ESLAFDALGEGP-YTGVSD--GRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIA 113 (359)
Q Consensus 37 ~~i~~~~~G~~l-~~~~~~--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~ 113 (359)
....++|||+.+ |++..+ ..|+.+|.++++.+.+. ...+......++|++..|+++
T Consensus 202 ~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~---------------------~~~g~~~~~~~SpDG~~la~~ 260 (430)
T PRK00178 202 LSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQIT---------------------NFEGLNGAPAWSPDGSKLAFV 260 (430)
T ss_pred eeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEcc---------------------CCCCCcCCeEECCCCCEEEEE
Confidence 466889999755 555443 47999999877544331 111112246788855566655
Q ss_pred eCCC---cEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCC
Q 018242 114 DAYF---GLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPAT 190 (359)
Q Consensus 114 ~~~~---~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~ 190 (359)
.... .|+++|.++++.+.+... . .......++|||++++++... .....|+.++..+
T Consensus 261 ~~~~g~~~Iy~~d~~~~~~~~lt~~-~----~~~~~~~~spDg~~i~f~s~~---------------~g~~~iy~~d~~~ 320 (430)
T PRK00178 261 LSKDGNPEIYVMDLASRQLSRVTNH-P----AIDTEPFWGKDGRTLYFTSDR---------------GGKPQIYKVNVNG 320 (430)
T ss_pred EccCCCceEEEEECCCCCeEEcccC-C----CCcCCeEECCCCCEEEEEECC---------------CCCceEEEEECCC
Confidence 3322 499999998876654321 1 122346789999977776221 1123699999887
Q ss_pred CcEEEEeCCCCCCceEEEccCCCEEEEEecCCC--EEEEEEcCCCCCcceeEeecCCCCCCceEECCCCCEE-EEEec
Q 018242 191 KQVTVLLGNLSFPNGVALSEDGNYILLAETTSC--RILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGGFW-VGIHS 265 (359)
Q Consensus 191 ~~~~~~~~~~~~p~gia~~~d~~~l~v~~~~~~--~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lw-v~~~~ 265 (359)
++.+.+..........+++||++.++++...++ .|+.+++++.. .+.+... .......++++|+.. ++...
T Consensus 321 g~~~~lt~~~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~---~~~lt~~-~~~~~p~~spdg~~i~~~~~~ 394 (430)
T PRK00178 321 GRAERVTFVGNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGS---VRILTDT-SLDESPSVAPNGTMLIYATRQ 394 (430)
T ss_pred CCEEEeecCCCCccceEECCCCCEEEEEEccCCceEEEEEECCCCC---EEEccCC-CCCCCceECCCCCEEEEEEec
Confidence 776655332222345678999998888765443 58888876532 2222221 122345788888743 44443
No 49
>KOG1214 consensus Nidogen and related basement membrane protein proteins [Cell wall/membrane/envelope biogenesis; Extracellular structures]
Probab=98.75 E-value=2.4e-07 Score=89.03 Aligned_cols=169 Identities=15% Similarity=0.134 Sum_probs=122.0
Q ss_pred CCCEEEEeeCCCCCCceEEEccCCC-eeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceE
Q 018242 22 TQGVVQYQIEGAIGPESLAFDALGE-GPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLG 100 (359)
Q Consensus 22 ~~~~~~~~~~~~~~p~~i~~~~~G~-~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g 100 (359)
+.+...|.-.++.+||+|++|..++ ++|+++...+|-.--+++.+.+. -+.....+|++
T Consensus 1056 G~Ep~ti~n~~L~SPEGiAVDh~~Rn~ywtDS~lD~IevA~LdG~~rkv--------------------Lf~tdLVNPR~ 1115 (1289)
T KOG1214|consen 1056 GAEPETIVNSGLISPEGIAVDHIRRNMYWTDSVLDKIEVALLDGSERKV--------------------LFYTDLVNPRA 1115 (1289)
T ss_pred CCCCceeecccCCCccceeeeeccceeeeeccccchhheeecCCceeeE--------------------EEeecccCcce
Confidence 4445577777899999999998764 68899988888766666543222 12344567999
Q ss_pred EEEecCCCeEEEEeCCC---cEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeec
Q 018242 101 LCFNKTNGDLYIADAYF---GLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSG 177 (359)
Q Consensus 101 i~~~~~~g~l~v~~~~~---~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~ 177 (359)
|++|+-+++||.+++.. .|-+.++++..-+.+... .+..||+|.+||..+.|-..|.++
T Consensus 1116 iv~D~~rgnLYwtDWnRenPkIets~mDG~NrRilin~----DigLPNGLtfdpfs~~LCWvDAGt-------------- 1177 (1289)
T KOG1214|consen 1116 IVVDPIRGNLYWTDWNRENPKIETSSMDGENRRILINT----DIGLPNGLTFDPFSKLLCWVDAGT-------------- 1177 (1289)
T ss_pred EEeecccCceeeccccccCCcceeeccCCccceEEeec----ccCCCCCceeCcccceeeEEecCC--------------
Confidence 99999999999999864 488888876554444331 345799999999988677776653
Q ss_pred CCCceEEEEeCCCCcEEEEeCCCCCCceEEEccCCCEEEEEecCCCEEEEEEcCCC
Q 018242 178 DKTGRLMKYDPATKQVTVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTS 233 (359)
Q Consensus 178 ~~~g~v~~~d~~~~~~~~~~~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~ 233 (359)
.++-.+.+++-.-+.+...+..|.+|.-+ ++.+||++...++|...++...
T Consensus 1178 ---~rleC~~p~g~gRR~i~~~LqYPF~itsy--~~~fY~TDWk~n~vvsv~~~~~ 1228 (1289)
T KOG1214|consen 1178 ---KRLECTLPDGTGRRVIQNNLQYPFSITSY--ADHFYHTDWKRNGVVSVNKHSG 1228 (1289)
T ss_pred ---cceeEecCCCCcchhhhhcccCceeeeec--cccceeeccccCceEEeecccc
Confidence 35666666643334456677888887654 4459999999999999887654
No 50
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=98.74 E-value=1.3e-05 Score=67.26 Aligned_cols=179 Identities=15% Similarity=0.091 Sum_probs=111.9
Q ss_pred eeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEEeCCCcEEEEeCCC
Q 018242 47 GPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIADAYFGLLKVGPEG 126 (359)
Q Consensus 47 ~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~~~~~~i~~~~~~~ 126 (359)
+|..+..+..|..|...++. ... .+.+.......+.+.|+++.|.++. ...|..||..+
T Consensus 12 iLvsA~YDhTIRfWqa~tG~-C~r-------------------Tiqh~dsqVNrLeiTpdk~~LAaa~-~qhvRlyD~~S 70 (311)
T KOG0315|consen 12 ILVSAGYDHTIRFWQALTGI-CSR-------------------TIQHPDSQVNRLEITPDKKDLAAAG-NQHVRLYDLNS 70 (311)
T ss_pred EEEeccCcceeeeeehhcCe-EEE-------------------EEecCccceeeEEEcCCcchhhhcc-CCeeEEEEccC
Confidence 46677888999999998873 111 2334445567788999555554443 44688888887
Q ss_pred CeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCCcEEEEeCCCCCCceE
Q 018242 127 GLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQVTVLLGNLSFPNGV 206 (359)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~p~gi 206 (359)
+.-.++.. +.+ .-..+..+.+..+|+.+|-+ +.+|.+-.+|................+.+
T Consensus 71 ~np~Pv~t-~e~-h~kNVtaVgF~~dgrWMyTg------------------seDgt~kIWdlR~~~~qR~~~~~spVn~v 130 (311)
T KOG0315|consen 71 NNPNPVAT-FEG-HTKNVTAVGFQCDGRWMYTG------------------SEDGTVKIWDLRSLSCQRNYQHNSPVNTV 130 (311)
T ss_pred CCCCceeE-Eec-cCCceEEEEEeecCeEEEec------------------CCCceEEEEeccCcccchhccCCCCcceE
Confidence 65433332 111 12356678888999966555 34567777887654444333334556889
Q ss_pred EEccCCCEEEEEecCCCEEEEEEcCCCCCcceeEeecCCCCCCceEECCCCCEEEEEecCCC
Q 018242 207 ALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGGFWVGIHSRRK 268 (359)
Q Consensus 207 a~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lwv~~~~~~~ 268 (359)
.+.|....|++.+ .++.|++||+..+.- ..+...+.......+.+++||...+|....++
T Consensus 131 vlhpnQteLis~d-qsg~irvWDl~~~~c-~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~ 190 (311)
T KOG0315|consen 131 VLHPNQTELISGD-QSGNIRVWDLGENSC-THELIPEDDTSIQSLTVMPDGSMLAAANNKGN 190 (311)
T ss_pred EecCCcceEEeec-CCCcEEEEEccCCcc-ccccCCCCCcceeeEEEcCCCcEEEEecCCcc
Confidence 9988766666665 668999999865421 12222221122355888999988877666554
No 51
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.74 E-value=1.3e-06 Score=83.66 Aligned_cols=169 Identities=13% Similarity=0.047 Sum_probs=107.2
Q ss_pred CCcceEEEEecCCCeEEEEeCCC----cEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccc
Q 018242 95 CGRPLGLCFNKTNGDLYIADAYF----GLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNH 170 (359)
Q Consensus 95 ~~~p~gi~~~~~~g~l~v~~~~~----~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~ 170 (359)
.++|..+.++++++.+|++.... .+..++........... .. .. -...++|++.|+.
T Consensus 234 dgnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfn-i~-----~i--ea~vkdGK~~~V~----------- 294 (635)
T PRK02888 234 DGNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFN-IA-----RI--EEAVKAGKFKTIG----------- 294 (635)
T ss_pred CCCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEc-hH-----HH--HHhhhCCCEEEEC-----------
Confidence 45788899999778888885321 24444443332211111 00 01 1334577767764
Q ss_pred eeeeeecCCCceEEEEeCCC-----CcEEEEeCCCCCCceEEEccCCCEEEEEecCCCEEEEEEcCCCC------Cccee
Q 018242 171 ISVILSGDKTGRLMKYDPAT-----KQVTVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSK------AGTIE 239 (359)
Q Consensus 171 ~~~~~~~~~~g~v~~~d~~~-----~~~~~~~~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~------~~~~~ 239 (359)
.++|..+|..+ ..+.........|.|++++|||+++|+++..++.+.++|+...+ +....
T Consensus 295 ---------gn~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~ 365 (635)
T PRK02888 295 ---------GSKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRD 365 (635)
T ss_pred ---------CCEEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccc
Confidence 23688999876 34444556678899999999999999999999999999986421 21111
Q ss_pred E-eec--CCCCCCceEECCCCCEEEEEecCCCccccccccCCcc-----------ceeeecCCccceeeee
Q 018242 240 I-VAQ--LPGFPDNIKRSPRGGFWVGIHSRRKGISKLVLSFPWI-----------GNVLIKLPIDIVKIHS 296 (359)
Q Consensus 240 ~-~~~--~~~~p~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~-----------g~~~~~~~~~~~~~~~ 296 (359)
. ..+ ++-.|--.++|.+|+.|++.+-... +++++.. ..++.++++.-+.-+.
T Consensus 366 ~vvaevevGlGPLHTaFDg~G~aytslf~dsq-----v~kwn~~~a~~~~~g~~~~~v~~k~dV~y~pgh~ 431 (635)
T PRK02888 366 AVVAEPELGLGPLHTAFDGRGNAYTTLFLDSQ-----IVKWNIEAAIRAYKGEKVDPIVQKLDVHYQPGHN 431 (635)
T ss_pred eEEEeeccCCCcceEEECCCCCEEEeEeecce-----eEEEehHHHHHHhccccCCcceecccCCCcccee
Confidence 2 222 4445888999999999998887664 5555532 2466666665444333
No 52
>KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown]
Probab=98.73 E-value=7.3e-06 Score=82.61 Aligned_cols=207 Identities=20% Similarity=0.318 Sum_probs=121.5
Q ss_pred CCCCCceEEEcc-CCCeeEEe-cCCCEEEEEEcC---C--cceEEEeecCCC----CCCCCCCcccccccccccCCcceE
Q 018242 32 GAIGPESLAFDA-LGEGPYTG-VSDGRIIKWHQD---Q--RRWLHFARTSPN----RDGCEGAYEYDHAAKEHICGRPLG 100 (359)
Q Consensus 32 ~~~~p~~i~~~~-~G~~l~~~-~~~~~i~~~d~~---~--~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~p~g 100 (359)
....-.-|+++| ||. ||++ .....|+++.-- . +.+...+...+- -++|.+ +.+........|.|
T Consensus 405 ~~sh~Yy~AvsPvdgt-lyvSdp~s~qv~rv~sl~~~d~~~N~evvaG~Ge~Clp~desCGD----GalA~dA~L~~PkG 479 (1899)
T KOG4659|consen 405 DTSHSYYIAVSPVDGT-LYVSDPLSKQVWRVSSLEPQDSRNNYEVVAGDGEVCLPADESCGD----GALAQDAQLIFPKG 479 (1899)
T ss_pred CccceeEEEecCcCce-EEecCCCcceEEEeccCCccccccCeeEEeccCcCccccccccCc----chhcccceeccCCc
Confidence 344556888998 677 6655 444677776321 1 113332211110 001211 12233334456899
Q ss_pred EEEecCCCeEEEEeCCCcEEEEeCCCCeEEEEeecC---------------CCccccccceEEEeCCCCEEEEEeCCCcc
Q 018242 101 LCFNKTNGDLYIADAYFGLLKVGPEGGLATAVATQS---------------EGIPFRFCNSLDIDQSTGIIYFTDSSSQF 165 (359)
Q Consensus 101 i~~~~~~g~l~v~~~~~~i~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~l~~d~~g~~l~v~d~~~~~ 165 (359)
|++|+ .|.||+++. ..|.++|.+ |-+..+.... ......+|.+++++|=.+.|||-|.
T Consensus 480 Ia~dk-~g~lYfaD~-t~IR~iD~~-giIstlig~~~~~~~p~~C~~~~kl~~~~leWPT~LaV~Pmdnsl~Vld~---- 552 (1899)
T KOG4659|consen 480 IAFDK-MGNLYFADG-TRIRVIDTT-GIISTLIGTTPDQHPPRTCAQITKLVDLQLEWPTSLAVDPMDNSLLVLDT---- 552 (1899)
T ss_pred eeEcc-CCcEEEecc-cEEEEeccC-ceEEEeccCCCCccCccccccccchhheeeecccceeecCCCCeEEEeec----
Confidence 99999 999999984 357777765 3333332211 1234578999999986666999853
Q ss_pred ccccceeeeeecCCCceEEEEeCCCCcEEEEeCC---------------------CCCCceEEEccCCCEEEEEecCCCE
Q 018242 166 QRRNHISVILSGDKTGRLMKYDPATKQVTVLLGN---------------------LSFPNGVALSEDGNYILLAETTSCR 224 (359)
Q Consensus 166 ~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~---------------------~~~p~gia~~~d~~~l~v~~~~~~~ 224 (359)
.-|+++++. +.+..+.+. ...+..|+++++|. ||+++++..+
T Consensus 553 ---------------nvvlrit~~-~rV~Ii~GrP~hC~~a~~t~~~skla~H~tl~~~r~Iavg~~G~-lyvaEsD~rr 615 (1899)
T KOG4659|consen 553 ---------------NVVLRITVV-HRVRIILGRPTHCDLANATSSASKLADHRTLLIQRDIAVGTDGA-LYVAESDGRR 615 (1899)
T ss_pred ---------------ceEEEEccC-ccEEEEcCCccccccCCCchhhhhhhhhhhhhhhhceeecCCce-EEEEeccchh
Confidence 257777766 455443211 22357899999996 9999999876
Q ss_pred EEEEEcCCCCCcceeEeec--------------------------CCCCCCceEECCCCCEEEEEecCCC
Q 018242 225 ILRYWLKTSKAGTIEIVAQ--------------------------LPGFPDNIKRSPRGGFWVGIHSRRK 268 (359)
Q Consensus 225 i~~~~~~~~~~~~~~~~~~--------------------------~~~~p~~i~~d~~G~lwv~~~~~~~ 268 (359)
|-+...-+. .+..-.++. .-..|..+|+.|+|.+++|..++..
T Consensus 616 iNrvr~~~t-dg~i~ilaGa~S~C~C~~~~~cdcfs~~~~~At~A~lnsp~alaVsPdg~v~IAD~gN~r 684 (1899)
T KOG4659|consen 616 INRVRKLST-DGTISILAGAKSPCSCDVAACCDCFSLRDVAATQAKLNSPYALAVSPDGDVIIADSGNSR 684 (1899)
T ss_pred hhheEEecc-CceEEEecCCCCCCCcccccCCccccccchhhhccccCCcceEEECCCCcEEEecCCchh
Confidence 665542110 001111111 0123778999999999999988653
No 53
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.72 E-value=3.2e-05 Score=72.92 Aligned_cols=181 Identities=12% Similarity=0.043 Sum_probs=108.9
Q ss_pred eEEEccCCC-eeE-EecC--CCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEE
Q 018242 38 SLAFDALGE-GPY-TGVS--DGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIA 113 (359)
Q Consensus 38 ~i~~~~~G~-~l~-~~~~--~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~ 113 (359)
...++|||+ ++| ++.. ...|+.+|..+++.+.+. ...+......++|++..+.+.
T Consensus 192 ~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt---------------------~~~g~~~~~~~SPDG~~la~~ 250 (419)
T PRK04043 192 FPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIA---------------------SSQGMLVVSDVSKDGSKLLLT 250 (419)
T ss_pred eEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEe---------------------cCCCcEEeeEECCCCCEEEEE
Confidence 677889997 244 4544 367999999887655442 111112234578855566665
Q ss_pred eCC---CcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCC
Q 018242 114 DAY---FGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPAT 190 (359)
Q Consensus 114 ~~~---~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~ 190 (359)
... ..|+.++.++++.+.+.. ... .-....++|||++|+++... .....||++|.++
T Consensus 251 ~~~~g~~~Iy~~dl~~g~~~~LT~-~~~----~d~~p~~SPDG~~I~F~Sdr---------------~g~~~Iy~~dl~~ 310 (419)
T PRK04043 251 MAPKGQPDIYLYDTNTKTLTQITN-YPG----IDVNGNFVEDDKRIVFVSDR---------------LGYPNIFMKKLNS 310 (419)
T ss_pred EccCCCcEEEEEECCCCcEEEccc-CCC----ccCccEECCCCCEEEEEECC---------------CCCceEEEEECCC
Confidence 332 259999998887665532 111 11124799999988887432 1123699999998
Q ss_pred CcEEEEeCCCCCCceEEEccCCCEEEEEecCC--------CEEEEEEcCCCCCcceeEeecCCCCCCceEECCCCC-EEE
Q 018242 191 KQVTVLLGNLSFPNGVALSEDGNYILLAETTS--------CRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGG-FWV 261 (359)
Q Consensus 191 ~~~~~~~~~~~~p~gia~~~d~~~l~v~~~~~--------~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~-lwv 261 (359)
++.+.+...... ...++|||+.+.++.... ..|+.++++++. .+.+.. .+.-....+++||+ |++
T Consensus 311 g~~~rlt~~g~~--~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~---~~~LT~-~~~~~~p~~SPDG~~I~f 384 (419)
T PRK04043 311 GSVEQVVFHGKN--NSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDY---IRRLTA-NGVNQFPRFSSDGGSIMF 384 (419)
T ss_pred CCeEeCccCCCc--CceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCC---eEECCC-CCCcCCeEECCCCCEEEE
Confidence 888655432111 248999999876665543 478888876542 222222 12223467889996 555
Q ss_pred EEec
Q 018242 262 GIHS 265 (359)
Q Consensus 262 ~~~~ 265 (359)
++..
T Consensus 385 ~~~~ 388 (419)
T PRK04043 385 IKYL 388 (419)
T ss_pred EEcc
Confidence 5543
No 54
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=98.70 E-value=1.6e-05 Score=66.81 Aligned_cols=186 Identities=15% Similarity=0.115 Sum_probs=116.0
Q ss_pred ceEEEccCCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEEeCC
Q 018242 37 ESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIADAY 116 (359)
Q Consensus 37 ~~i~~~~~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~~~~ 116 (359)
..+.|..+|+-+|++.++|.+.+||...-+.. + .+... .....+++.|...+|++++..
T Consensus 87 taVgF~~dgrWMyTgseDgt~kIWdlR~~~~q------------------R--~~~~~-spVn~vvlhpnQteLis~dqs 145 (311)
T KOG0315|consen 87 TAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQ------------------R--NYQHN-SPVNTVVLHPNQTELISGDQS 145 (311)
T ss_pred EEEEEeecCeEEEecCCCceEEEEeccCcccc------------------h--hccCC-CCcceEEecCCcceEEeecCC
Confidence 46778889998889999999999998653111 0 11111 224678888867889998866
Q ss_pred CcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCCcEEE-
Q 018242 117 FGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQVTV- 195 (359)
Q Consensus 117 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~- 195 (359)
+.|..+|........... + .....+..+.+++||. ..++- ...|..|+++.-++....
T Consensus 146 g~irvWDl~~~~c~~~li--P-e~~~~i~sl~v~~dgs-ml~a~-----------------nnkG~cyvW~l~~~~~~s~ 204 (311)
T KOG0315|consen 146 GNIRVWDLGENSCTHELI--P-EDDTSIQSLTVMPDGS-MLAAA-----------------NNKGNCYVWRLLNHQTASE 204 (311)
T ss_pred CcEEEEEccCCccccccC--C-CCCcceeeEEEcCCCc-EEEEe-----------------cCCccEEEEEccCCCcccc
Confidence 669999998765443221 1 1224678899999999 55551 234677777765432221
Q ss_pred Ee--CCC----CCCceEEEccCCCEEEEEecCCCEEEEEEcCCCCCcceeEeec-CCCCCCceEECCCCCEEEEEecCC
Q 018242 196 LL--GNL----SFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQ-LPGFPDNIKRSPRGGFWVGIHSRR 267 (359)
Q Consensus 196 ~~--~~~----~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~p~~i~~d~~G~lwv~~~~~~ 267 (359)
+. ..+ ...-...++||+++ +++.+.+.++..|+.++- . ..+...+ -..-..+-+|+.||.+.++....+
T Consensus 205 l~P~~k~~ah~~~il~C~lSPd~k~-lat~ssdktv~iwn~~~~-~-kle~~l~gh~rWvWdc~FS~dg~YlvTassd~ 280 (311)
T KOG0315|consen 205 LEPVHKFQAHNGHILRCLLSPDVKY-LATCSSDKTVKIWNTDDF-F-KLELVLTGHQRWVWDCAFSADGEYLVTASSDH 280 (311)
T ss_pred ceEhhheecccceEEEEEECCCCcE-EEeecCCceEEEEecCCc-e-eeEEEeecCCceEEeeeeccCccEEEecCCCC
Confidence 11 111 12234568999984 566667789999987553 1 1121112 122355678899998777555433
No 55
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=98.69 E-value=1.2e-05 Score=76.14 Aligned_cols=184 Identities=14% Similarity=0.093 Sum_probs=109.5
Q ss_pred eEEEccCCCeeEEecC-C--CEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEEe
Q 018242 38 SLAFDALGEGPYTGVS-D--GRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIAD 114 (359)
Q Consensus 38 ~i~~~~~G~~l~~~~~-~--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~~ 114 (359)
...++|||+.++.... . ..|+.+|..+++...+. ...+....+++++++..++++.
T Consensus 194 ~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~---------------------~~~~~~~~~~~spDg~~l~~~~ 252 (417)
T TIGR02800 194 SPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVA---------------------SFPGMNGAPAFSPDGSKLAVSL 252 (417)
T ss_pred cccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEee---------------------cCCCCccceEECCCCCEEEEEE
Confidence 4568899985554432 2 47999998876444332 1112233467888555676654
Q ss_pred CC---CcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCC
Q 018242 115 AY---FGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATK 191 (359)
Q Consensus 115 ~~---~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~ 191 (359)
.. ..|+.++..+++.+.+... . .......++++|++|+++... .....||.++.+++
T Consensus 253 ~~~~~~~i~~~d~~~~~~~~l~~~-~----~~~~~~~~s~dg~~l~~~s~~---------------~g~~~iy~~d~~~~ 312 (417)
T TIGR02800 253 SKDGNPDIYVMDLDGKQLTRLTNG-P----GIDTEPSWSPDGKSIAFTSDR---------------GGSPQIYMMDADGG 312 (417)
T ss_pred CCCCCccEEEEECCCCCEEECCCC-C----CCCCCEEECCCCCEEEEEECC---------------CCCceEEEEECCCC
Confidence 32 2499999988876554321 1 112245788999866665221 11236999998877
Q ss_pred cEEEEeCCCCCCceEEEccCCCEEEEEecCC--CEEEEEEcCCCCCcceeEeecCCCCCCceEECCCCC-EEEEEecC
Q 018242 192 QVTVLLGNLSFPNGVALSEDGNYILLAETTS--CRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGG-FWVGIHSR 266 (359)
Q Consensus 192 ~~~~~~~~~~~p~gia~~~d~~~l~v~~~~~--~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~-lwv~~~~~ 266 (359)
+.+.+..........+++||++.++++.... .+|+.+++... ..+.+.. ........+.++|+ |+++....
T Consensus 313 ~~~~l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~---~~~~l~~-~~~~~~p~~spdg~~l~~~~~~~ 386 (417)
T TIGR02800 313 EVRRLTFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGG---GERVLTD-TGLDESPSFAPNGRMILYATTRG 386 (417)
T ss_pred CEEEeecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCC---CeEEccC-CCCCCCceECCCCCEEEEEEeCC
Confidence 7665544444456778999999888876543 37888887543 2222222 11234457888886 55555443
No 56
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.66 E-value=1.3e-05 Score=69.29 Aligned_cols=195 Identities=10% Similarity=0.091 Sum_probs=116.1
Q ss_pred CCceEEEccCCCeeEEecCC-CEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEE
Q 018242 35 GPESLAFDALGEGPYTGVSD-GRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIA 113 (359)
Q Consensus 35 ~p~~i~~~~~G~~l~~~~~~-~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~ 113 (359)
.-.+++++|+-+.||+.++. ..|..++.++.-.++++- .....|-+|.+.. +|...++
T Consensus 87 nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL--------------------~g~~DpE~Ieyig-~n~fvi~ 145 (316)
T COG3204 87 NVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPL--------------------TGFSDPETIEYIG-GNQFVIV 145 (316)
T ss_pred cccceeeCCCcceEEEecCCCceEEEEecCCceEEEecc--------------------cccCChhHeEEec-CCEEEEE
Confidence 45589999998888877665 578888887764444421 1123455676664 5555555
Q ss_pred eCCC-cEEE--EeCCCCeEEEEee---cC--CCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEE
Q 018242 114 DAYF-GLLK--VGPEGGLATAVAT---QS--EGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMK 185 (359)
Q Consensus 114 ~~~~-~i~~--~~~~~~~~~~~~~---~~--~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~ 185 (359)
+... .++. ++.++.... ... .. .........++++|+.++++|++- .....+|+.
T Consensus 146 dER~~~l~~~~vd~~t~~~~-~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aK----------------Er~P~~I~~ 208 (316)
T COG3204 146 DERDRALYLFTVDADTTVIS-AKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAK----------------ERNPIGIFE 208 (316)
T ss_pred ehhcceEEEEEEcCCccEEe-ccceEEeccccCCCCcCceeeecCCCCceEEEEE----------------ccCCcEEEE
Confidence 5433 3444 444443221 111 00 111244678999999988899981 222346777
Q ss_pred EeCCCCcEEEEeCC---------CCCCceEEEccCCCEEEEEecCCCEEEEEEcCCCCCcceeEeecCC------CCCCc
Q 018242 186 YDPATKQVTVLLGN---------LSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLP------GFPDN 250 (359)
Q Consensus 186 ~d~~~~~~~~~~~~---------~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~------~~p~~ 250 (359)
++.....+...... .....|+.+++..+.|+|...++..|...+.+++............ ..+.|
T Consensus 209 ~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~G~~~~~lsL~~g~~gL~~dipqaEG 288 (316)
T COG3204 209 VTQSPSSLSVHASLDPTADRDLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLSGEVIELLSLTKGNHGLSSDIPQAEG 288 (316)
T ss_pred EecCCcccccccccCcccccceEeeccccceecCCCCcEEEEecCCceEEEEecCCCeeeeEEeccCCCCCcccCCCcce
Confidence 76432222111100 1234688999877778998888999999998765322111111111 13788
Q ss_pred eEECCCCCEEEEEecCC
Q 018242 251 IKRSPRGGFWVGIHSRR 267 (359)
Q Consensus 251 i~~d~~G~lwv~~~~~~ 267 (359)
++.|.+|+||+.+..+.
T Consensus 289 iamDd~g~lYIvSEPnl 305 (316)
T COG3204 289 IAMDDDGNLYIVSEPNL 305 (316)
T ss_pred eEECCCCCEEEEecCCc
Confidence 99999999999887654
No 57
>PRK03629 tolB translocation protein TolB; Provisional
Probab=98.66 E-value=7.3e-05 Score=71.03 Aligned_cols=141 Identities=12% Similarity=0.062 Sum_probs=85.9
Q ss_pred ceEEEEecCCCeEEEEeCC---CcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeee
Q 018242 98 PLGLCFNKTNGDLYIADAY---FGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVI 174 (359)
Q Consensus 98 p~gi~~~~~~g~l~v~~~~---~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~ 174 (359)
....+++|++..|.+.... ..|+.++.++++.+.+.. ..+ ......++|||++|+++...
T Consensus 201 ~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~-~~~----~~~~~~~SPDG~~La~~~~~------------ 263 (429)
T PRK03629 201 LMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVAS-FPR----HNGAPAFSPDGSKLAFALSK------------ 263 (429)
T ss_pred eeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccC-CCC----CcCCeEECCCCCEEEEEEcC------------
Confidence 3467889954455544322 248888998887655432 111 23357999999977776321
Q ss_pred eecCCCceEEEEeCCCCcEEEEeCCCCCCceEEEccCCCEEEEEecCC--CEEEEEEcCCCCCcceeEeecCCCCCCceE
Q 018242 175 LSGDKTGRLMKYDPATKQVTVLLGNLSFPNGVALSEDGNYILLAETTS--CRILRYWLKTSKAGTIEIVAQLPGFPDNIK 252 (359)
Q Consensus 175 ~~~~~~g~v~~~d~~~~~~~~~~~~~~~p~gia~~~d~~~l~v~~~~~--~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~ 252 (359)
.....|+.+|.++++.+.+..........+++|||+.++++.... ..|+++++++.. .+.+...........
T Consensus 264 ---~g~~~I~~~d~~tg~~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~---~~~lt~~~~~~~~~~ 337 (429)
T PRK03629 264 ---TGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGA---PQRITWEGSQNQDAD 337 (429)
T ss_pred ---CCCcEEEEEECCCCCEEEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCC---eEEeecCCCCccCEE
Confidence 112359999998887776544433456788999999775554332 378888875532 222222222234578
Q ss_pred ECCCCCEEE
Q 018242 253 RSPRGGFWV 261 (359)
Q Consensus 253 ~d~~G~lwv 261 (359)
++++|+..+
T Consensus 338 ~SpDG~~Ia 346 (429)
T PRK03629 338 VSSDGKFMV 346 (429)
T ss_pred ECCCCCEEE
Confidence 889997443
No 58
>PRK01742 tolB translocation protein TolB; Provisional
Probab=98.65 E-value=2.3e-05 Score=74.52 Aligned_cols=178 Identities=13% Similarity=0.159 Sum_probs=104.9
Q ss_pred ceEEEccCCCeeE-EecC--CCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEE
Q 018242 37 ESLAFDALGEGPY-TGVS--DGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIA 113 (359)
Q Consensus 37 ~~i~~~~~G~~l~-~~~~--~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~ 113 (359)
.++.++|||+.+. ++.. +..|+.||..+++.+.+. ... +....++++|++..|+++
T Consensus 207 ~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~------------------~~~---g~~~~~~wSPDG~~La~~ 265 (429)
T PRK01742 207 MSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVA------------------SFR---GHNGAPAFSPDGSRLAFA 265 (429)
T ss_pred ccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEe------------------cCC---CccCceeECCCCCEEEEE
Confidence 4688999998554 4332 247999998876443332 111 112246788845556665
Q ss_pred eCCC---cEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCC
Q 018242 114 DAYF---GLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPAT 190 (359)
Q Consensus 114 ~~~~---~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~ 190 (359)
...+ .|+.++.++++.+.+.. . ........++|||++|+++... ...-.||.++..+
T Consensus 266 ~~~~g~~~Iy~~d~~~~~~~~lt~-~----~~~~~~~~wSpDG~~i~f~s~~---------------~g~~~I~~~~~~~ 325 (429)
T PRK01742 266 SSKDGVLNIYVMGANGGTPSQLTS-G----AGNNTEPSWSPDGQSILFTSDR---------------SGSPQVYRMSASG 325 (429)
T ss_pred EecCCcEEEEEEECCCCCeEeecc-C----CCCcCCEEECCCCCEEEEEECC---------------CCCceEEEEECCC
Confidence 4322 38888988877655432 1 1134568999999977766211 1123688888876
Q ss_pred CcEEEEeCCCCCCceEEEccCCCEEEEEecCCCEEEEEEcCCCCCcceeEeecCCCCCCceEECCCCCEEEEEe
Q 018242 191 KQVTVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGGFWVGIH 264 (359)
Q Consensus 191 ~~~~~~~~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lwv~~~ 264 (359)
+..+.+ ... . ...+++|||+.+++... ..++++|+.... .+.+.. ........++++|+..+...
T Consensus 326 ~~~~~l-~~~-~-~~~~~SpDG~~ia~~~~--~~i~~~Dl~~g~---~~~lt~-~~~~~~~~~sPdG~~i~~~s 390 (429)
T PRK01742 326 GGASLV-GGR-G-YSAQISADGKTLVMING--DNVVKQDLTSGS---TEVLSS-TFLDESPSISPNGIMIIYSS 390 (429)
T ss_pred CCeEEe-cCC-C-CCccCCCCCCEEEEEcC--CCEEEEECCCCC---eEEecC-CCCCCCceECCCCCEEEEEE
Confidence 655444 221 1 34678999998777654 568888875432 122211 11124577899998555443
No 59
>KOG1214 consensus Nidogen and related basement membrane protein proteins [Cell wall/membrane/envelope biogenesis; Extracellular structures]
Probab=98.63 E-value=1.2e-06 Score=84.34 Aligned_cols=192 Identities=15% Similarity=0.155 Sum_probs=127.8
Q ss_pred CCCceEEEcc-CCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEE
Q 018242 34 IGPESLAFDA-LGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYI 112 (359)
Q Consensus 34 ~~p~~i~~~~-~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v 112 (359)
.-|-+|.+|= +-.++|++.....|.+-.+++.+.+++ +......|-||++|....++|.
T Consensus 1025 ~IiVGidfDC~e~mvyWtDv~g~SI~rasL~G~Ep~ti--------------------~n~~L~SPEGiAVDh~~Rn~yw 1084 (1289)
T KOG1214|consen 1025 SIIVGIDFDCRERMVYWTDVAGRSISRASLEGAEPETI--------------------VNSGLISPEGIAVDHIRRNMYW 1084 (1289)
T ss_pred ceeeeeecccccceEEEeecCCCccccccccCCCCcee--------------------ecccCCCccceeeeeccceeee
Confidence 4567888884 455788888888888877776654432 2334467889999988899999
Q ss_pred EeCC-CcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCC
Q 018242 113 ADAY-FGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATK 191 (359)
Q Consensus 113 ~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~ 191 (359)
++.. +.|-.-.+++.+.+.+... ....|.+|++|+=++.||.+|+ .+++ -.|-..+.++.
T Consensus 1085 tDS~lD~IevA~LdG~~rkvLf~t----dLVNPR~iv~D~~rgnLYwtDW----nRen-----------PkIets~mDG~ 1145 (1289)
T KOG1214|consen 1085 TDSVLDKIEVALLDGSERKVLFYT----DLVNPRAIVVDPIRGNLYWTDW----NREN-----------PKIETSSMDGE 1145 (1289)
T ss_pred eccccchhheeecCCceeeEEEee----cccCcceEEeecccCceeeccc----cccC-----------CcceeeccCCc
Confidence 9764 3454444444443333321 3457889999976555999964 3322 13444444432
Q ss_pred cEE-EEeCCCCCCceEEEccCCCEEEEEecCCCEEEEEEcCCCCCcceeEeecCCCCCCceEECCCCCEEEEEecCCC
Q 018242 192 QVT-VLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGGFWVGIHSRRK 268 (359)
Q Consensus 192 ~~~-~~~~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lwv~~~~~~~ 268 (359)
.-+ .+..+.--|||+.|+|..+.|-|.+..++++.....++. +.+..+..+. +|-+|.-+.+. +|.+.|....
T Consensus 1146 NrRilin~DigLPNGLtfdpfs~~LCWvDAGt~rleC~~p~g~--gRR~i~~~Lq-YPF~itsy~~~-fY~TDWk~n~ 1219 (1289)
T KOG1214|consen 1146 NRRILINTDIGLPNGLTFDPFSKLLCWVDAGTKRLECTLPDGT--GRRVIQNNLQ-YPFSITSYADH-FYHTDWKRNG 1219 (1289)
T ss_pred cceEEeecccCCCCCceeCcccceeeEEecCCcceeEecCCCC--cchhhhhccc-Cceeeeecccc-ceeeccccCc
Confidence 222 344667789999999999999999999999998875543 3333333332 48888877766 8888886543
No 60
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.60 E-value=2.3e-05 Score=69.11 Aligned_cols=181 Identities=15% Similarity=0.100 Sum_probs=109.3
Q ss_pred CCCEEEEeeCCCCCCc-eEEEccCCCeeEEecCC-----CEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccC
Q 018242 22 TQGVVQYQIEGAIGPE-SLAFDALGEGPYTGVSD-----GRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHIC 95 (359)
Q Consensus 22 ~~~~~~~~~~~~~~p~-~i~~~~~G~~l~~~~~~-----~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (359)
++...++..+.-..=. --++++||++||++-++ |.|-+||... .+..+. ++....
T Consensus 38 g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~-~~~ri~------------------E~~s~G 98 (305)
T PF07433_consen 38 GQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAAR-GYRRIG------------------EFPSHG 98 (305)
T ss_pred CceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcC-CcEEEe------------------EecCCC
Confidence 3444455554311111 34578999988887544 8899999883 344433 455556
Q ss_pred CcceEEEEecCCCeEEEEeCC------------------CcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEE
Q 018242 96 GRPLGLCFNKTNGDLYIADAY------------------FGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIY 157 (359)
Q Consensus 96 ~~p~gi~~~~~~g~l~v~~~~------------------~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~ 157 (359)
..|+-+.+.+++..|.|++.+ ..|..+|..+|++..-....+......+..|+++++|. +|
T Consensus 99 IGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~-V~ 177 (305)
T PF07433_consen 99 IGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGT-VA 177 (305)
T ss_pred cChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccccccceeeEEecCCCc-EE
Confidence 678999999944488888731 13666666667643322222223445788999999999 99
Q ss_pred EEeCCCccccccceeeeeecCCCceEEEEeCCCCcEEEEeCC------C-CCCceEEEccCCCEEEEEecCCCEEEEEEc
Q 018242 158 FTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQVTVLLGN------L-SFPNGVALSEDGNYILLAETTSCRILRYWL 230 (359)
Q Consensus 158 v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~------~-~~p~gia~~~d~~~l~v~~~~~~~i~~~~~ 230 (359)
++..... .. ....--|...... ..++.+... + ...-.||++.+++.+.++....+++..||.
T Consensus 178 ~a~Q~qg---~~-------~~~~PLva~~~~g-~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~ 246 (305)
T PF07433_consen 178 FAMQYQG---DP-------GDAPPLVALHRRG-GALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDA 246 (305)
T ss_pred EEEecCC---CC-------CccCCeEEEEcCC-CcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEEC
Confidence 9954211 00 0001124444443 223322211 1 223589999999988899999999999986
Q ss_pred CCC
Q 018242 231 KTS 233 (359)
Q Consensus 231 ~~~ 233 (359)
.+.
T Consensus 247 ~tg 249 (305)
T PF07433_consen 247 ATG 249 (305)
T ss_pred CCC
Confidence 554
No 61
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=98.60 E-value=0.00036 Score=64.59 Aligned_cols=195 Identities=15% Similarity=0.121 Sum_probs=111.3
Q ss_pred CCceEEEccCCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEEe
Q 018242 35 GPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIAD 114 (359)
Q Consensus 35 ~p~~i~~~~~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~~ 114 (359)
.-.++.++|||.++.....++.++.||.++++..-.-. .-....+...++.++|+..++..+.
T Consensus 192 FV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~-----------------~~~aHkGsIfalsWsPDs~~~~T~S 254 (603)
T KOG0318|consen 192 FVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELE-----------------DSDAHKGSIFALSWSPDSTQFLTVS 254 (603)
T ss_pred ceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEec-----------------CCCCccccEEEEEECCCCceEEEec
Confidence 34589999999966667788999999999875432210 0012224456777888444444444
Q ss_pred CCCcEEEEeCCCCeEEEEee---cCCCc------------------------------------cccccceEEEeCCCCE
Q 018242 115 AYFGLLKVGPEGGLATAVAT---QSEGI------------------------------------PFRFCNSLDIDQSTGI 155 (359)
Q Consensus 115 ~~~~i~~~~~~~~~~~~~~~---~~~~~------------------------------------~~~~~~~l~~d~~g~~ 155 (359)
....+-.+|..++++..-.. ...++ ....+..+.+.++|.+
T Consensus 255 aDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~ 334 (603)
T KOG0318|consen 255 ADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKT 334 (603)
T ss_pred CCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCE
Confidence 33334455555443321100 00000 1123444555555554
Q ss_pred EEEEeCCCccccccceeeeeecCCCceEEEEeCCCCcEEEEeC--CCCCCceEEEccCCCEEEEEecCCCEEEEEEcCCC
Q 018242 156 IYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQVTVLLG--NLSFPNGVALSEDGNYILLAETTSCRILRYWLKTS 233 (359)
Q Consensus 156 l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~--~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~ 233 (359)
||-+ +..|.|..|+..++..-.+.+ +.....+++.+..+. ++... .++.|.++++.++
T Consensus 335 i~Sg------------------syDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~-~~t~g-~Dd~l~~~~~~~~ 394 (603)
T KOG0318|consen 335 IYSG------------------SYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGE-LFTIG-WDDTLRVISLKDN 394 (603)
T ss_pred EEee------------------ccCceEEEEecCCccccccccccccceEEEEeecCCCc-EEEEe-cCCeEEEEecccC
Confidence 4433 557889999987765544432 223445777665443 45544 5679999988665
Q ss_pred CCcceeEeecCCCCCCceEECCCCCEEEEEecCC
Q 018242 234 KAGTIEIVAQLPGFPDNIKRSPRGGFWVGIHSRR 267 (359)
Q Consensus 234 ~~~~~~~~~~~~~~p~~i~~d~~G~lwv~~~~~~ 267 (359)
..+..+. .+++..|.++++.++|.+.+.+...+
T Consensus 395 ~~t~~~~-~~lg~QP~~lav~~d~~~avv~~~~~ 427 (603)
T KOG0318|consen 395 GYTKSEV-VKLGSQPKGLAVLSDGGTAVVACISD 427 (603)
T ss_pred cccccce-eecCCCceeEEEcCCCCEEEEEecCc
Confidence 4443332 33556688999999987666555444
No 62
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=98.59 E-value=0.00019 Score=66.98 Aligned_cols=253 Identities=16% Similarity=0.163 Sum_probs=125.4
Q ss_pred CCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEEeCCCcEEEEeC
Q 018242 45 GEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIADAYFGLLKVGP 124 (359)
Q Consensus 45 G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~~~~~~i~~~~~ 124 (359)
|..+|++..++.++.+|+.+++...-. ..... ...+.+++ ++.+|+++..+.++.+|.
T Consensus 65 ~~~v~v~~~~g~v~a~d~~tG~~~W~~------------------~~~~~--~~~~p~v~--~~~v~v~~~~g~l~ald~ 122 (377)
T TIGR03300 65 GGKVYAADADGTVVALDAETGKRLWRV------------------DLDER--LSGGVGAD--GGLVFVGTEKGEVIALDA 122 (377)
T ss_pred CCEEEEECCCCeEEEEEccCCcEeeee------------------cCCCC--cccceEEc--CCEEEEEcCCCEEEEEEC
Confidence 334899988899999998877533211 01000 01123343 788999876667999999
Q ss_pred CCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCCcEEEEeCCCCCC-
Q 018242 125 EGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQVTVLLGNLSFP- 203 (359)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~p- 203 (359)
++|+...... ..+... ...++ .++. +|+.. ..+.|+.+|+++++..........+
T Consensus 123 ~tG~~~W~~~-~~~~~~---~~p~v-~~~~-v~v~~------------------~~g~l~a~d~~tG~~~W~~~~~~~~~ 178 (377)
T TIGR03300 123 EDGKELWRAK-LSSEVL---SPPLV-ANGL-VVVRT------------------NDGRLTALDAATGERLWTYSRVTPAL 178 (377)
T ss_pred CCCcEeeeec-cCceee---cCCEE-ECCE-EEEEC------------------CCCeEEEEEcCCCceeeEEccCCCce
Confidence 8887643222 111111 11122 2445 88762 2467999999888765433211110
Q ss_pred -----ceEEEccCCCEEEEEecCCCEEEEEEcCCCCCcceeEeecCCCC---------CCceEECCCCCEEEEEecCCCc
Q 018242 204 -----NGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGF---------PDNIKRSPRGGFWVGIHSRRKG 269 (359)
Q Consensus 204 -----~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~---------p~~i~~d~~G~lwv~~~~~~~~ 269 (359)
...++. ++ .+|+. ..++.++.+|+..++......+....+. .....+ .++.+|+++..+.
T Consensus 179 ~~~~~~sp~~~-~~-~v~~~-~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~-~~~~vy~~~~~g~-- 252 (377)
T TIGR03300 179 TLRGSASPVIA-DG-GVLVG-FAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVV-DGGQVYAVSYQGR-- 252 (377)
T ss_pred eecCCCCCEEE-CC-EEEEE-CCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEE-ECCEEEEEEcCCE--
Confidence 111222 33 35544 4567899998754422111111100000 001122 2467888776543
Q ss_pred cccccccCC-ccceeeecCCccce----eeeeecccccCcceEEEEECC-CCCEEEEEEccCCceeeceEEEEEeCCEEE
Q 018242 270 ISKLVLSFP-WIGNVLIKLPIDIV----KIHSSLVKLSGNGGMAMRISE-QGNVLEILEEIGRKMWRSISEVEEKDGNLW 343 (359)
Q Consensus 270 ~~~~~~~~~-~~g~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~g~~~~~~~~~~~~~g~l~ 343 (359)
+..++ .+|++....+.+.. ......+....+ +.++++|. +|+.+..+....+. ........++.||
T Consensus 253 ----l~a~d~~tG~~~W~~~~~~~~~p~~~~~~vyv~~~~-G~l~~~d~~tG~~~W~~~~~~~~---~~ssp~i~g~~l~ 324 (377)
T TIGR03300 253 ----VAALDLRSGRVLWKRDASSYQGPAVDDNRLYVTDAD-GVVVALDRRSGSELWKNDELKYR---QLTAPAVVGGYLV 324 (377)
T ss_pred ----EEEEECCCCcEEEeeccCCccCceEeCCEEEEECCC-CeEEEEECCCCcEEEccccccCC---ccccCEEECCEEE
Confidence 44544 46776655432210 001111222233 45667765 35555443221111 1112223467888
Q ss_pred EecCCCCeEEEEcCC
Q 018242 344 IGSVNMPYAGLYNYS 358 (359)
Q Consensus 344 ig~~~~~~l~~~~~~ 358 (359)
+++. +..|..++..
T Consensus 325 ~~~~-~G~l~~~d~~ 338 (377)
T TIGR03300 325 VGDF-EGYLHWLSRE 338 (377)
T ss_pred EEeC-CCEEEEEECC
Confidence 8875 5567776654
No 63
>PRK04792 tolB translocation protein TolB; Provisional
Probab=98.58 E-value=0.00013 Score=69.78 Aligned_cols=143 Identities=13% Similarity=0.072 Sum_probs=85.9
Q ss_pred eEEEEecCCCeEEEEeCCC---cEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeee
Q 018242 99 LGLCFNKTNGDLYIADAYF---GLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVIL 175 (359)
Q Consensus 99 ~gi~~~~~~g~l~v~~~~~---~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~ 175 (359)
....++|++..|+++...+ .|+.+|.++++.+.+.. ..+ ......++|||++|+++...
T Consensus 221 ~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~-~~g----~~~~~~wSPDG~~La~~~~~------------- 282 (448)
T PRK04792 221 MSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTS-FPG----INGAPRFSPDGKKLALVLSK------------- 282 (448)
T ss_pred cCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecC-CCC----CcCCeeECCCCCEEEEEEeC-------------
Confidence 3466888555565543322 49999998887655432 111 12357899999977765221
Q ss_pred ecCCCceEEEEeCCCCcEEEEeCCCCCCceEEEccCCCEEEEEecC--CCEEEEEEcCCCCCcceeEeecCCCCCCceEE
Q 018242 176 SGDKTGRLMKYDPATKQVTVLLGNLSFPNGVALSEDGNYILLAETT--SCRILRYWLKTSKAGTIEIVAQLPGFPDNIKR 253 (359)
Q Consensus 176 ~~~~~g~v~~~d~~~~~~~~~~~~~~~p~gia~~~d~~~l~v~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~ 253 (359)
.....|+.+|.++++.+.+..........+++||++.++++... ...|+++++++.+. +.+..........++
T Consensus 283 --~g~~~Iy~~dl~tg~~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~---~~Lt~~g~~~~~~~~ 357 (448)
T PRK04792 283 --DGQPEIYVVDIATKALTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKV---SRLTFEGEQNLGGSI 357 (448)
T ss_pred --CCCeEEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCE---EEEecCCCCCcCeeE
Confidence 11236999999888776654433344567899999987776543 34688888764422 222111112234678
Q ss_pred CCCCC-EEEEEe
Q 018242 254 SPRGG-FWVGIH 264 (359)
Q Consensus 254 d~~G~-lwv~~~ 264 (359)
+++|+ |+++..
T Consensus 358 SpDG~~l~~~~~ 369 (448)
T PRK04792 358 TPDGRSMIMVNR 369 (448)
T ss_pred CCCCCEEEEEEe
Confidence 89986 444443
No 64
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=98.58 E-value=1.7e-05 Score=68.74 Aligned_cols=171 Identities=17% Similarity=0.234 Sum_probs=91.7
Q ss_pred CCCEEEEeeCCCCCCceEEEccCCCeeEEecCCCEEEEEEcCCc--ce-----EEEeecCCCCCCCCCCccccccccccc
Q 018242 22 TQGVVQYQIEGAIGPESLAFDALGEGPYTGVSDGRIIKWHQDQR--RW-----LHFARTSPNRDGCEGAYEYDHAAKEHI 94 (359)
Q Consensus 22 ~~~~~~~~~~~~~~p~~i~~~~~G~~l~~~~~~~~i~~~d~~~~--~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (359)
++.+.+++..++..||+|+...+|.++.+.-.++.++.++.+.. .. ..+. +.+...
T Consensus 53 G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~~~~~~~~~~~~~~~-----------------l~~~~~ 115 (248)
T PF06977_consen 53 GKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTIDDDTTSLDRADVQKIS-----------------LGFPNK 115 (248)
T ss_dssp --EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE----TT--EEEEEEEE--------------------S--
T ss_pred CCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEeccccccchhhceEEe-----------------cccccC
Confidence 45566899988999999999988884444445788988876321 11 1111 011111
Q ss_pred C-CcceEEEEecCCCeEEEEeCCC--cEEEEeC--CCCeEEEEee-c-C-CCccccccceEEEeCCCCEEEEEeCCCccc
Q 018242 95 C-GRPLGLCFNKTNGDLYIADAYF--GLLKVGP--EGGLATAVAT-Q-S-EGIPFRFCNSLDIDQSTGIIYFTDSSSQFQ 166 (359)
Q Consensus 95 ~-~~p~gi~~~~~~g~l~v~~~~~--~i~~~~~--~~~~~~~~~~-~-~-~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~ 166 (359)
. ...-|+++|+.++++|++.... +|+.++. .......... . . .......+.++.++|..+++|+-...
T Consensus 116 ~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~e---- 191 (248)
T PF06977_consen 116 GNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDE---- 191 (248)
T ss_dssp -SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---EEEEETTTTEEEEEETT----
T ss_pred CCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceeccccceEEcCCCCeEEEEECC----
Confidence 1 1246999999889999985443 4777765 2222221111 0 1 12233468899999987669998443
Q ss_pred cccceeeeeecCCCceEEEEeCCCCcEEEE--eC-------CCCCCceEEEccCCCEEEEEecCCCEEEEE
Q 018242 167 RRNHISVILSGDKTGRLMKYDPATKQVTVL--LG-------NLSFPNGVALSEDGNYILLAETTSCRILRY 228 (359)
Q Consensus 167 ~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~--~~-------~~~~p~gia~~~d~~~l~v~~~~~~~i~~~ 228 (359)
...|..+|.++.-.... .. ....|.|||++++|+ ||+++. -+..++|
T Consensus 192 -------------s~~l~~~d~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~-LYIvsE-pNlfy~f 247 (248)
T PF06977_consen 192 -------------SRLLLELDRQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGN-LYIVSE-PNLFYRF 247 (248)
T ss_dssp -------------TTEEEEE-TT--EEEEEE-STTGGG-SS---SEEEEEE-TT---EEEEET-TTEEEEE
T ss_pred -------------CCeEEEECCCCCEEEEEEeCCcccCcccccCCccEEEECCCCC-EEEEcC-CceEEEe
Confidence 34688888764322222 12 245799999999986 888875 5678877
No 65
>PRK04922 tolB translocation protein TolB; Provisional
Probab=98.56 E-value=7.6e-05 Score=71.06 Aligned_cols=142 Identities=16% Similarity=0.143 Sum_probs=86.0
Q ss_pred eEEEEecCCCeEEEEeCCC---cEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeee
Q 018242 99 LGLCFNKTNGDLYIADAYF---GLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVIL 175 (359)
Q Consensus 99 ~gi~~~~~~g~l~v~~~~~---~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~ 175 (359)
...+++|++..|+++.... .|++++.++++.+.+.. ..+ ......++|||++|+++...
T Consensus 207 ~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~-~~g----~~~~~~~SpDG~~l~~~~s~------------- 268 (433)
T PRK04922 207 LSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELVAS-FRG----INGAPSFSPDGRRLALTLSR------------- 268 (433)
T ss_pred ccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEecc-CCC----CccCceECCCCCEEEEEEeC-------------
Confidence 4566788555566554322 49999998887655432 111 22357899999977666321
Q ss_pred ecCCCceEEEEeCCCCcEEEEeCCCCCCceEEEccCCCEEEEEecCC--CEEEEEEcCCCCCcceeEeecCCCCCCceEE
Q 018242 176 SGDKTGRLMKYDPATKQVTVLLGNLSFPNGVALSEDGNYILLAETTS--CRILRYWLKTSKAGTIEIVAQLPGFPDNIKR 253 (359)
Q Consensus 176 ~~~~~g~v~~~d~~~~~~~~~~~~~~~p~gia~~~d~~~l~v~~~~~--~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~ 253 (359)
.....|+.+|.++++.+.+..........+++|||+.++++.... ..|+.+++++... +.+..........++
T Consensus 269 --~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~---~~lt~~g~~~~~~~~ 343 (433)
T PRK04922 269 --DGNPEIYVMDLGSRQLTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSA---ERLTFQGNYNARASV 343 (433)
T ss_pred --CCCceEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCe---EEeecCCCCccCEEE
Confidence 112369999998887766543333335678999999877665433 3588888755322 222111223345788
Q ss_pred CCCCC-EEEEE
Q 018242 254 SPRGG-FWVGI 263 (359)
Q Consensus 254 d~~G~-lwv~~ 263 (359)
+++|+ |+++.
T Consensus 344 SpDG~~Ia~~~ 354 (433)
T PRK04922 344 SPDGKKIAMVH 354 (433)
T ss_pred CCCCCEEEEEE
Confidence 99997 44443
No 66
>KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown]
Probab=98.55 E-value=3.2e-05 Score=78.19 Aligned_cols=190 Identities=19% Similarity=0.293 Sum_probs=119.6
Q ss_pred CCCCCceEEEccCCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEE
Q 018242 32 GAIGPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLY 111 (359)
Q Consensus 32 ~~~~p~~i~~~~~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~ 111 (359)
.+..|..++..+||- +|++..+ .|.++-++++ ..++.... .. .......|+++|-+|.||
T Consensus 363 ~L~aPvala~a~DGS-l~VGDfN-yIRRI~~dg~-v~tIl~L~----------------~t-~~sh~Yy~AvsPvdgtly 422 (1899)
T KOG4659|consen 363 SLFAPVALAYAPDGS-LIVGDFN-YIRRISQDGQ-VSTILTLG----------------LT-DTSHSYYIAVSPVDGTLY 422 (1899)
T ss_pred eeeceeeEEEcCCCc-EEEccch-heeeecCCCc-eEEEEEec----------------CC-CccceeEEEecCcCceEE
Confidence 355789999999999 8888774 6888877764 44443111 01 111235799999999999
Q ss_pred EEeCCC-cEEEEeCC-C----CeEEEEeecC----------C------CccccccceEEEeCCCCEEEEEeCCCcccccc
Q 018242 112 IADAYF-GLLKVGPE-G----GLATAVATQS----------E------GIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRN 169 (359)
Q Consensus 112 v~~~~~-~i~~~~~~-~----~~~~~~~~~~----------~------~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~ 169 (359)
+++... .|+|+..- . +..+.++... . .....+|.+|++|.+|. ||++|..
T Consensus 423 vSdp~s~qv~rv~sl~~~d~~~N~evvaG~Ge~Clp~desCGDGalA~dA~L~~PkGIa~dk~g~-lYfaD~t------- 494 (1899)
T KOG4659|consen 423 VSDPLSKQVWRVSSLEPQDSRNNYEVVAGDGEVCLPADESCGDGALAQDAQLIFPKGIAFDKMGN-LYFADGT------- 494 (1899)
T ss_pred ecCCCcceEEEeccCCccccccCeeEEeccCcCccccccccCcchhcccceeccCCceeEccCCc-EEEeccc-------
Confidence 998754 58887421 1 1122232211 0 12356899999999999 9999754
Q ss_pred ceeeeeecCCCceEEEEeCCCCcEEEEe--------------------CCCCCCceEEEccCCCEEEEEecCCCEEEEEE
Q 018242 170 HISVILSGDKTGRLMKYDPATKQVTVLL--------------------GNLSFPNGVALSEDGNYILLAETTSCRILRYW 229 (359)
Q Consensus 170 ~~~~~~~~~~~g~v~~~d~~~~~~~~~~--------------------~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~ 229 (359)
.|-++|.+ +-+..+. -.+..|..+|++|=.+.|||.+ ++-|++++
T Consensus 495 ------------~IR~iD~~-giIstlig~~~~~~~p~~C~~~~kl~~~~leWPT~LaV~Pmdnsl~Vld--~nvvlrit 559 (1899)
T KOG4659|consen 495 ------------RIRVIDTT-GIISTLIGTTPDQHPPRTCAQITKLVDLQLEWPTSLAVDPMDNSLLVLD--TNVVLRIT 559 (1899)
T ss_pred ------------EEEEeccC-ceEEEeccCCCCccCccccccccchhheeeecccceeecCCCCeEEEee--cceEEEEc
Confidence 34445543 3332221 1245788999999555688875 45677665
Q ss_pred cCCCCCcceeEeec------C---------------CCCCCceEECCCCCEEEEEecCCC
Q 018242 230 LKTSKAGTIEIVAQ------L---------------PGFPDNIKRSPRGGFWVGIHSRRK 268 (359)
Q Consensus 230 ~~~~~~~~~~~~~~------~---------------~~~p~~i~~d~~G~lwv~~~~~~~ 268 (359)
.... ..+... + --.+..|++.++|.|||+..++++
T Consensus 560 ~~~r----V~Ii~GrP~hC~~a~~t~~~skla~H~tl~~~r~Iavg~~G~lyvaEsD~rr 615 (1899)
T KOG4659|consen 560 VVHR----VRIILGRPTHCDLANATSSASKLADHRTLLIQRDIAVGTDGALYVAESDGRR 615 (1899)
T ss_pred cCcc----EEEEcCCccccccCCCchhhhhhhhhhhhhhhhceeecCCceEEEEeccchh
Confidence 4211 111111 0 123678999999999999988654
No 67
>PTZ00421 coronin; Provisional
Probab=98.54 E-value=0.00021 Score=68.68 Aligned_cols=195 Identities=12% Similarity=0.078 Sum_probs=110.3
Q ss_pred ceEEEcc-CCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEE-e
Q 018242 37 ESLAFDA-LGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIA-D 114 (359)
Q Consensus 37 ~~i~~~~-~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~-~ 114 (359)
.+++++| ++++++++..++.|..||..+.....-. .. .+..+.........+++++..++++++ .
T Consensus 79 ~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~---------~~----~l~~L~gH~~~V~~l~f~P~~~~iLaSgs 145 (493)
T PTZ00421 79 IDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNI---------SD----PIVHLQGHTKKVGIVSFHPSAMNVLASAG 145 (493)
T ss_pred EEEEEcCCCCCEEEEEeCCCEEEEEecCCCcccccc---------Cc----ceEEecCCCCcEEEEEeCcCCCCEEEEEe
Confidence 5889998 7887888999999999997654211000 00 000222233445678899854455554 4
Q ss_pred CCCcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCCcEE
Q 018242 115 AYFGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQVT 194 (359)
Q Consensus 115 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~ 194 (359)
..+.|..+|.++++....... ....+..+.++++|+ +.++- ...+.|..||+.+++..
T Consensus 146 ~DgtVrIWDl~tg~~~~~l~~----h~~~V~sla~spdG~-lLatg-----------------s~Dg~IrIwD~rsg~~v 203 (493)
T PTZ00421 146 ADMVVNVWDVERGKAVEVIKC----HSDQITSLEWNLDGS-LLCTT-----------------SKDKKLNIIDPRDGTIV 203 (493)
T ss_pred CCCEEEEEECCCCeEEEEEcC----CCCceEEEEEECCCC-EEEEe-----------------cCCCEEEEEECCCCcEE
Confidence 444588889987764322211 113577899999999 55552 34567889998876643
Q ss_pred EEe-CC-CCCCceEEEccCCCEEEEEe---cCCCEEEEEEcCCCCCcceeEee-cCCCCCCceEECCCCCEEE-EEecCC
Q 018242 195 VLL-GN-LSFPNGVALSEDGNYILLAE---TTSCRILRYWLKTSKAGTIEIVA-QLPGFPDNIKRSPRGGFWV-GIHSRR 267 (359)
Q Consensus 195 ~~~-~~-~~~p~gia~~~d~~~l~v~~---~~~~~i~~~~~~~~~~~~~~~~~-~~~~~p~~i~~d~~G~lwv-~~~~~~ 267 (359)
... .+ ......+.+.+++..++.+. ..++.|..||+..... ...... .......-..+|+++++++ +..+.+
T Consensus 204 ~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~-p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg 282 (493)
T PTZ00421 204 SSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMAS-PYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEG 282 (493)
T ss_pred EEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCC-ceeEeccCCCCceEEEEEcCCCCEEEEEEeCCC
Confidence 222 11 11223556777766555443 2357899999754321 111111 1111111235788887544 443344
No 68
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.50 E-value=0.00038 Score=65.47 Aligned_cols=262 Identities=11% Similarity=0.069 Sum_probs=126.7
Q ss_pred CCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCccccccccccc-CCc-ceEEEEecCCCeEEEEeCCCcEEE
Q 018242 44 LGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHI-CGR-PLGLCFNKTNGDLYIADAYFGLLK 121 (359)
Q Consensus 44 ~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-p~gi~~~~~~g~l~v~~~~~~i~~ 121 (359)
+|+ +|+...++.++.+|.++++...-........ ..... ... ..+++++ ++++|++...+.++.
T Consensus 69 ~~~-vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~-----------~~~~~~~~~~~~~~~v~--~~~v~v~~~~g~l~a 134 (394)
T PRK11138 69 YNK-VYAADRAGLVKALDADTGKEIWSVDLSEKDG-----------WFSKNKSALLSGGVTVA--GGKVYIGSEKGQVYA 134 (394)
T ss_pred CCE-EEEECCCCeEEEEECCCCcEeeEEcCCCccc-----------ccccccccccccccEEE--CCEEEEEcCCCEEEE
Confidence 445 8988888999999998876443221110000 00000 000 1133444 789999876667999
Q ss_pred EeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCCcEEEEeCCC-
Q 018242 122 VGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQVTVLLGNL- 200 (359)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~- 200 (359)
+|.++|+..-... ..+.....| ++. ++. +|+.. ..+.|+.+|+++|+........
T Consensus 135 ld~~tG~~~W~~~-~~~~~~ssP---~v~-~~~-v~v~~------------------~~g~l~ald~~tG~~~W~~~~~~ 190 (394)
T PRK11138 135 LNAEDGEVAWQTK-VAGEALSRP---VVS-DGL-VLVHT------------------SNGMLQALNESDGAVKWTVNLDV 190 (394)
T ss_pred EECCCCCCccccc-CCCceecCC---EEE-CCE-EEEEC------------------CCCEEEEEEccCCCEeeeecCCC
Confidence 9999887543221 111111111 222 455 88872 2457999999988876543211
Q ss_pred C-----CCceEEEccCCCEEEEEecCCCEEEEEEcCCCCCcceeEeecCCC---------CCCceEECCCCCEEEEEecC
Q 018242 201 S-----FPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPG---------FPDNIKRSPRGGFWVGIHSR 266 (359)
Q Consensus 201 ~-----~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~---------~p~~i~~d~~G~lwv~~~~~ 266 (359)
. .....++. + ..+|+.. .++.++.++...++...........+ ......+ .+|.+|+++..+
T Consensus 191 ~~~~~~~~~sP~v~-~-~~v~~~~-~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v-~~~~vy~~~~~g 266 (394)
T PRK11138 191 PSLTLRGESAPATA-F-GGAIVGG-DNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVV-VGGVVYALAYNG 266 (394)
T ss_pred CcccccCCCCCEEE-C-CEEEEEc-CCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEE-ECCEEEEEEcCC
Confidence 0 00111222 2 3356654 56788888876543221111111000 0001112 246788776543
Q ss_pred CCccccccccC-CccceeeecCCcccee----eeeecccccCcceEEEEECCC-CCEEEEEEccCCceeeceEEEEEeCC
Q 018242 267 RKGISKLVLSF-PWIGNVLIKLPIDIVK----IHSSLVKLSGNGGMAMRISEQ-GNVLEILEEIGRKMWRSISEVEEKDG 340 (359)
Q Consensus 267 ~~~~~~~~~~~-~~~g~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~g~~~~~~~~~~~~~g 340 (359)
. +..+ ..+|+.+.+.+.+... .....+-...+ +.+++++.+ |+.+.......+. ........++
T Consensus 267 ~------l~ald~~tG~~~W~~~~~~~~~~~~~~~~vy~~~~~-g~l~ald~~tG~~~W~~~~~~~~---~~~sp~v~~g 336 (394)
T PRK11138 267 N------LVALDLRSGQIVWKREYGSVNDFAVDGGRIYLVDQN-DRVYALDTRGGVELWSQSDLLHR---LLTAPVLYNG 336 (394)
T ss_pred e------EEEEECCCCCEEEeecCCCccCcEEECCEEEEEcCC-CeEEEEECCCCcEEEcccccCCC---cccCCEEECC
Confidence 3 3443 3467766554332110 00111111223 456666643 4444332211111 1122223578
Q ss_pred EEEEecCCCCeEEEEcCC
Q 018242 341 NLWIGSVNMPYAGLYNYS 358 (359)
Q Consensus 341 ~l~ig~~~~~~l~~~~~~ 358 (359)
+||+++. +..|..++.+
T Consensus 337 ~l~v~~~-~G~l~~ld~~ 353 (394)
T PRK11138 337 YLVVGDS-EGYLHWINRE 353 (394)
T ss_pred EEEEEeC-CCEEEEEECC
Confidence 8998875 5567777654
No 69
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=98.48 E-value=5.1e-06 Score=74.30 Aligned_cols=154 Identities=11% Similarity=0.103 Sum_probs=98.5
Q ss_pred ceEEEccCCCeeEEecCCCEEEEEEcCCcceEE-EeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEEeC
Q 018242 37 ESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLH-FARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIADA 115 (359)
Q Consensus 37 ~~i~~~~~G~~l~~~~~~~~i~~~d~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~~~ 115 (359)
.-|.++||.+.+.++..+.-+..||.+++...+ +. ......+...+.-|+.-.+.++..
T Consensus 273 ~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~--------------------~~~~~S~~sc~W~pDg~~~V~Gs~ 332 (519)
T KOG0293|consen 273 SYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYP--------------------SGLGFSVSSCAWCPDGFRFVTGSP 332 (519)
T ss_pred EEEEECCCCCeEEecCchHheeeccCCcchhhhhcc--------------------cCcCCCcceeEEccCCceeEecCC
Confidence 468899999966666666678899998874322 11 112344667888884444444444
Q ss_pred CCcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCCcEEE
Q 018242 116 YFGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQVTV 195 (359)
Q Consensus 116 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~ 195 (359)
...++.++.+++..... .+.....++++++.+||++++..+. ...+..|+.++..-+-
T Consensus 333 dr~i~~wdlDgn~~~~W----~gvr~~~v~dlait~Dgk~vl~v~~------------------d~~i~l~~~e~~~dr~ 390 (519)
T KOG0293|consen 333 DRTIIMWDLDGNILGNW----EGVRDPKVHDLAITYDGKYVLLVTV------------------DKKIRLYNREARVDRG 390 (519)
T ss_pred CCcEEEecCCcchhhcc----cccccceeEEEEEcCCCcEEEEEec------------------ccceeeechhhhhhhc
Confidence 55699999987653221 2222346789999999997766631 3356667766533221
Q ss_pred EeCCCCCCceEEEccCCCEEEEEecCCCEEEEEEcCCC
Q 018242 196 LLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTS 233 (359)
Q Consensus 196 ~~~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~ 233 (359)
+...-.....+.++.|++ +...+-.++.+..||+..+
T Consensus 391 lise~~~its~~iS~d~k-~~LvnL~~qei~LWDl~e~ 427 (519)
T KOG0293|consen 391 LISEEQPITSFSISKDGK-LALVNLQDQEIHLWDLEEN 427 (519)
T ss_pred cccccCceeEEEEcCCCc-EEEEEcccCeeEEeecchh
Confidence 222223346788999998 5666677889999998754
No 70
>PRK00178 tolB translocation protein TolB; Provisional
Probab=98.47 E-value=0.00031 Score=66.88 Aligned_cols=142 Identities=13% Similarity=0.135 Sum_probs=84.7
Q ss_pred eEEEEecCCCeEEEEeCC---CcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeee
Q 018242 99 LGLCFNKTNGDLYIADAY---FGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVIL 175 (359)
Q Consensus 99 ~gi~~~~~~g~l~v~~~~---~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~ 175 (359)
....++|++..|.+.... ..|++++.++++.+.+.. ..+ ......++|||++|+++...
T Consensus 202 ~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~-~~g----~~~~~~~SpDG~~la~~~~~------------- 263 (430)
T PRK00178 202 LSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITN-FEG----LNGAPAWSPDGSKLAFVLSK------------- 263 (430)
T ss_pred eeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccC-CCC----CcCCeEECCCCCEEEEEEcc-------------
Confidence 456788855566444322 249999999887655432 111 22357899999977766321
Q ss_pred ecCCCceEEEEeCCCCcEEEEeCCCCCCceEEEccCCCEEEEEecC--CCEEEEEEcCCCCCcceeEeecCCCCCCceEE
Q 018242 176 SGDKTGRLMKYDPATKQVTVLLGNLSFPNGVALSEDGNYILLAETT--SCRILRYWLKTSKAGTIEIVAQLPGFPDNIKR 253 (359)
Q Consensus 176 ~~~~~g~v~~~d~~~~~~~~~~~~~~~p~gia~~~d~~~l~v~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~ 253 (359)
.....|+.+|.+++..+.+...........++||++.++++... ...|+++++.+.+. +.+...........+
T Consensus 264 --~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~---~~lt~~~~~~~~~~~ 338 (430)
T PRK00178 264 --DGNPEIYVMDLASRQLSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRA---ERVTFVGNYNARPRL 338 (430)
T ss_pred --CCCceEEEEECCCCCeEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCE---EEeecCCCCccceEE
Confidence 11236999999888776554332334456899999987766533 24788888755432 222111122234678
Q ss_pred CCCCC-EEEEE
Q 018242 254 SPRGG-FWVGI 263 (359)
Q Consensus 254 d~~G~-lwv~~ 263 (359)
+++|+ +++..
T Consensus 339 Spdg~~i~~~~ 349 (430)
T PRK00178 339 SADGKTLVMVH 349 (430)
T ss_pred CCCCCEEEEEE
Confidence 88886 44444
No 71
>PRK02889 tolB translocation protein TolB; Provisional
Probab=98.46 E-value=0.00026 Score=67.24 Aligned_cols=139 Identities=12% Similarity=0.074 Sum_probs=81.9
Q ss_pred eEEEEecCCCeEEEEeCCC---cEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeee
Q 018242 99 LGLCFNKTNGDLYIADAYF---GLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVIL 175 (359)
Q Consensus 99 ~gi~~~~~~g~l~v~~~~~---~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~ 175 (359)
...+++|++..|+++...+ .|+.+|..+++.+.+.. .. ......+++|||++|+++...
T Consensus 199 ~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~-~~----g~~~~~~~SPDG~~la~~~~~------------- 260 (427)
T PRK02889 199 ISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVAN-FK----GSNSAPAWSPDGRTLAVALSR------------- 260 (427)
T ss_pred ccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEeec-CC----CCccceEECCCCCEEEEEEcc-------------
Confidence 4567888555666554322 49999999887655432 11 123467899999877765221
Q ss_pred ecCCCceEEEEeCCCCcEEEEeCCCCCCceEEEccCCCEEEEEecC--CCEEEEEEcCCCCCcceeEeecCCCCCCceEE
Q 018242 176 SGDKTGRLMKYDPATKQVTVLLGNLSFPNGVALSEDGNYILLAETT--SCRILRYWLKTSKAGTIEIVAQLPGFPDNIKR 253 (359)
Q Consensus 176 ~~~~~g~v~~~d~~~~~~~~~~~~~~~p~gia~~~d~~~l~v~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~ 253 (359)
.....||.+|.+++..+.+..........+++|||+.++++... ...|+.+++.+.. .+.+...........+
T Consensus 261 --~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~---~~~lt~~g~~~~~~~~ 335 (427)
T PRK02889 261 --DGNSQIYTVNADGSGLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGA---AQRVTFTGSYNTSPRI 335 (427)
T ss_pred --CCCceEEEEECCCCCcEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCc---eEEEecCCCCcCceEE
Confidence 11236999998877665543332233457899999987765433 3357776654432 1222111122334678
Q ss_pred CCCCCEE
Q 018242 254 SPRGGFW 260 (359)
Q Consensus 254 d~~G~lw 260 (359)
+++|+..
T Consensus 336 SpDG~~I 342 (427)
T PRK02889 336 SPDGKLL 342 (427)
T ss_pred CCCCCEE
Confidence 8999743
No 72
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=98.46 E-value=0.00045 Score=63.98 Aligned_cols=197 Identities=15% Similarity=0.145 Sum_probs=127.1
Q ss_pred EEEeeCCCCCCceEEEccCCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEec
Q 018242 26 VQYQIEGAIGPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNK 105 (359)
Q Consensus 26 ~~~~~~~~~~p~~i~~~~~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~ 105 (359)
.++..+-...-.+++..++|..+|.+..+|.|..|+..++.--.+ .-....+...+|+.+.
T Consensus 313 ~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~-------------------~g~~h~nqI~~~~~~~ 373 (603)
T KOG0318|consen 313 LKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRL-------------------AGKGHTNQIKGMAASE 373 (603)
T ss_pred hheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCcccccc-------------------ccccccceEEEEeecC
Confidence 344445556777899999999999999999999999876521100 0012223456777775
Q ss_pred CCCeEEEEeCCCcEEEEeCCCCeEEEE-eecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEE
Q 018242 106 TNGDLYIADAYFGLLKVGPEGGLATAV-ATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLM 184 (359)
Q Consensus 106 ~~g~l~v~~~~~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~ 184 (359)
.+.++...+.+.|.+++.+.+..+.- .-.. ...|-++++.++|..+.++. ...|.
T Consensus 374 -~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~l----g~QP~~lav~~d~~~avv~~-------------------~~~iv 429 (603)
T KOG0318|consen 374 -SGELFTIGWDDTLRVISLKDNGYTKSEVVKL----GSQPKGLAVLSDGGTAVVAC-------------------ISDIV 429 (603)
T ss_pred -CCcEEEEecCCeEEEEecccCcccccceeec----CCCceeEEEcCCCCEEEEEe-------------------cCcEE
Confidence 68999888877888887765433211 0111 23566899999987455542 22455
Q ss_pred EEeCCCCcEEEEeCCCCCCceEEEccCCCEEEEEecCCCEEEEEEcCCCCCcceeEeecCCCCCCceEECCCCCEEEEEe
Q 018242 185 KYDPATKQVTVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGGFWVGIH 264 (359)
Q Consensus 185 ~~d~~~~~~~~~~~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lwv~~~ 264 (359)
.+.-.+ ....+. -.-.+.++|++|+++...|.. .++.|+.|.+.+..+.......+..+-+..+++++||.+++++-
T Consensus 430 ~l~~~~-~~~~~~-~~y~~s~vAv~~~~~~vaVGG-~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~D 506 (603)
T KOG0318|consen 430 LLQDQT-KVSSIP-IGYESSAVAVSPDGSEVAVGG-QDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGD 506 (603)
T ss_pred EEecCC-cceeec-cccccceEEEcCCCCEEEEec-ccceEEEEEecCCcccceeeeecccCCceEEEECCCCcEEEEec
Confidence 554332 222222 234578999999998666655 55679999998765533333334455578899999998888776
Q ss_pred cCCC
Q 018242 265 SRRK 268 (359)
Q Consensus 265 ~~~~ 268 (359)
..+.
T Consensus 507 a~rk 510 (603)
T KOG0318|consen 507 ASRK 510 (603)
T ss_pred cCCc
Confidence 6665
No 73
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=98.45 E-value=5.6e-05 Score=67.21 Aligned_cols=217 Identities=13% Similarity=0.131 Sum_probs=119.3
Q ss_pred eEEEccCCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEE-----EecCCCeEEE
Q 018242 38 SLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLC-----FNKTNGDLYI 112 (359)
Q Consensus 38 ~i~~~~~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~-----~~~~~g~l~v 112 (359)
+++++|||+.+..+..+|.|..|||++++-. . + .+.....-..+++ .++ ..+.++
T Consensus 162 cvawsPDgk~iASG~~dg~I~lwdpktg~~~--g----------~-------~l~gH~K~It~Lawep~hl~p-~~r~la 221 (480)
T KOG0271|consen 162 CVAWSPDGKKIASGSKDGSIRLWDPKTGQQI--G----------R-------ALRGHKKWITALAWEPLHLVP-PCRRLA 221 (480)
T ss_pred EEEECCCcchhhccccCCeEEEecCCCCCcc--c----------c-------cccCcccceeEEeecccccCC-Ccccee
Confidence 7899999998888999999999999987311 0 0 0111101122333 234 334444
Q ss_pred EeCCC-cEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCC
Q 018242 113 ADAYF-GLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATK 191 (359)
Q Consensus 113 ~~~~~-~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~ 191 (359)
+...+ .+..+|...++...... .. -..+.-+.+..+|- ||-+ +....|-.|+...|
T Consensus 222 s~skDg~vrIWd~~~~~~~~~ls-gH---T~~VTCvrwGG~gl-iySg------------------S~DrtIkvw~a~dG 278 (480)
T KOG0271|consen 222 SSSKDGSVRIWDTKLGTCVRTLS-GH---TASVTCVRWGGEGL-IYSG------------------SQDRTIKVWRALDG 278 (480)
T ss_pred cccCCCCEEEEEccCceEEEEec-cC---ccceEEEEEcCCce-EEec------------------CCCceEEEEEccch
Confidence 43333 47778887766433221 11 11334556666665 6655 22233444444333
Q ss_pred cEE-EEeCCCCCCceEEEc-----------------------------------cCCCEEEEEecCCCEEEEEEcCCCCC
Q 018242 192 QVT-VLLGNLSFPNGVALS-----------------------------------EDGNYILLAETTSCRILRYWLKTSKA 235 (359)
Q Consensus 192 ~~~-~~~~~~~~p~gia~~-----------------------------------~d~~~l~v~~~~~~~i~~~~~~~~~~ 235 (359)
.+- .+..+....|.++++ +++.-.+|+.+++.+++.|+....+.
T Consensus 279 ~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kk 358 (480)
T KOG0271|consen 279 KLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKK 358 (480)
T ss_pred hHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEeccccccc
Confidence 221 111222222333222 12122589999999999998543211
Q ss_pred cceeEeecCCCCCCceEECCCCCEEE-EEecCCCccccccccCC-ccceeeecCCccceeeeeecccccCc
Q 018242 236 GTIEIVAQLPGFPDNIKRSPRGGFWV-GIHSRRKGISKLVLSFP-WIGNVLIKLPIDIVKIHSSLVKLSGN 304 (359)
Q Consensus 236 ~~~~~~~~~~~~p~~i~~d~~G~lwv-~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~ 304 (359)
. ...........+.+.++|||++.+ |+++.. +..++ .+|+.+..+-.++..+..+....+.+
T Consensus 359 p-i~rmtgHq~lVn~V~fSPd~r~IASaSFDkS------VkLW~g~tGk~lasfRGHv~~VYqvawsaDsR 422 (480)
T KOG0271|consen 359 P-ITRMTGHQALVNHVSFSPDGRYIASASFDKS------VKLWDGRTGKFLASFRGHVAAVYQVAWSADSR 422 (480)
T ss_pred c-hhhhhchhhheeeEEECCCccEEEEeecccc------eeeeeCCCcchhhhhhhccceeEEEEeccCcc
Confidence 0 011111223467799999996555 333333 55554 58999998888888888887776654
No 74
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=98.44 E-value=0.00039 Score=59.53 Aligned_cols=179 Identities=11% Similarity=0.116 Sum_probs=110.8
Q ss_pred CeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEEeCCCc-EEEEeC
Q 018242 46 EGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIADAYFG-LLKVGP 124 (359)
Q Consensus 46 ~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~~~~~~-i~~~~~ 124 (359)
.+++.+.++..+..|++....... . .....+....+...++++++ +++..++...++ +..+|.
T Consensus 29 ~~l~sasrDk~ii~W~L~~dd~~~-G--------------~~~r~~~GHsH~v~dv~~s~-dg~~alS~swD~~lrlWDl 92 (315)
T KOG0279|consen 29 DILVSASRDKTIIVWKLTSDDIKY-G--------------VPVRRLTGHSHFVSDVVLSS-DGNFALSASWDGTLRLWDL 92 (315)
T ss_pred ceEEEcccceEEEEEEeccCcccc-C--------------ceeeeeeccceEecceEEcc-CCceEEeccccceEEEEEe
Confidence 347788888999999886542111 0 00002233344566788888 777777655554 677899
Q ss_pred CCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCCcEEEEeCC--CCC
Q 018242 125 EGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQVTVLLGN--LSF 202 (359)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~--~~~ 202 (359)
.+++.++... .. -..+-.+++++|.+ -.++ +++...+..++..++-...+..+ ...
T Consensus 93 ~~g~~t~~f~-GH---~~dVlsva~s~dn~-qivS-----------------GSrDkTiklwnt~g~ck~t~~~~~~~~W 150 (315)
T KOG0279|consen 93 ATGESTRRFV-GH---TKDVLSVAFSTDNR-QIVS-----------------GSRDKTIKLWNTLGVCKYTIHEDSHREW 150 (315)
T ss_pred cCCcEEEEEE-ec---CCceEEEEecCCCc-eeec-----------------CCCcceeeeeeecccEEEEEecCCCcCc
Confidence 9886554322 11 12456789999998 6665 23345677777764433333333 234
Q ss_pred CceEEEccCC-CEEEEEecCCCEEEEEEcCCCCCcceeEeecCCCCCCceEECCCCCEEEEEe
Q 018242 203 PNGVALSEDG-NYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGGFWVGIH 264 (359)
Q Consensus 203 p~gia~~~d~-~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lwv~~~ 264 (359)
.+-+.|+|.. +-.+++.+.+..+.+||++.-+.. ..+....+...-+++++||.+-+...
T Consensus 151 VscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~--~~~~gh~~~v~t~~vSpDGslcasGg 211 (315)
T KOG0279|consen 151 VSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLR--TTFIGHSGYVNTVTVSPDGSLCASGG 211 (315)
T ss_pred EEEEEEcCCCCCcEEEEccCCceEEEEccCCcchh--hccccccccEEEEEECCCCCEEecCC
Confidence 5678888874 457888888999999998653221 12222334455689999998877643
No 75
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=98.44 E-value=0.0008 Score=58.03 Aligned_cols=196 Identities=11% Similarity=0.104 Sum_probs=120.5
Q ss_pred EEeeCCCCCCceEEEccCCCeeEEecCCCEEEEEEcCCc-ceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEec
Q 018242 27 QYQIEGAIGPESLAFDALGEGPYTGVSDGRIIKWHQDQR-RWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNK 105 (359)
Q Consensus 27 ~~~~~~~~~p~~i~~~~~G~~l~~~~~~~~i~~~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~ 105 (359)
|+.-+-+.--.++-+.+|.+.+..+..+|++..||.-|. +...++ -...=....+++|
T Consensus 49 r~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haip---------------------l~s~WVMtCA~sP 107 (343)
T KOG0286|consen 49 RTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIP---------------------LPSSWVMTCAYSP 107 (343)
T ss_pred EEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEe---------------------cCceeEEEEEECC
Confidence 444455667789999999998889999999999998664 222221 1111245788999
Q ss_pred CCCeEEEEeC-CCc--EEEEeCC--CCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCC
Q 018242 106 TNGDLYIADA-YFG--LLKVGPE--GGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKT 180 (359)
Q Consensus 106 ~~g~l~v~~~-~~~--i~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~ 180 (359)
.++...+.. .+. ||.+..+ .+.+. +.....+ .-.+.....+-+|++ |..+ + ..
T Consensus 108 -Sg~~VAcGGLdN~Csiy~ls~~d~~g~~~-v~r~l~g-HtgylScC~f~dD~~-ilT~-S-----------------GD 165 (343)
T KOG0286|consen 108 -SGNFVACGGLDNKCSIYPLSTRDAEGNVR-VSRELAG-HTGYLSCCRFLDDNH-ILTG-S-----------------GD 165 (343)
T ss_pred -CCCeEEecCcCceeEEEecccccccccce-eeeeecC-ccceeEEEEEcCCCc-eEec-C-----------------CC
Confidence 777666533 332 4444322 11111 1111111 123555666767776 5443 2 24
Q ss_pred ceEEEEeCCCCcEEEE-eCCCCCCceEEEcc-CCCEEEEEecCCCEEEEEEcCCCCCcceeEeecCCCCCCceEECCCCC
Q 018242 181 GRLMKYDPATKQVTVL-LGNLSFPNGVALSE-DGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGG 258 (359)
Q Consensus 181 g~v~~~d~~~~~~~~~-~~~~~~p~gia~~~-d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~ 258 (359)
.....||.++++.... ..+..-.-++.+.| +++ .|++..-+..-..||+..+ ...+.|.....-.+.+.+=|+|.
T Consensus 166 ~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~n-tFvSg~cD~~aklWD~R~~--~c~qtF~ghesDINsv~ffP~G~ 242 (343)
T KOG0286|consen 166 MTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGN-TFVSGGCDKSAKLWDVRSG--QCVQTFEGHESDINSVRFFPSGD 242 (343)
T ss_pred ceEEEEEcccceEEEEecCCcccEEEEecCCCCCC-eEEecccccceeeeeccCc--ceeEeecccccccceEEEccCCC
Confidence 4677788887765543 33334456788888 776 7999999999999998654 33455544333356688888887
Q ss_pred EEEEEecCCC
Q 018242 259 FWVGIHSRRK 268 (359)
Q Consensus 259 lwv~~~~~~~ 268 (359)
-+++..+...
T Consensus 243 afatGSDD~t 252 (343)
T KOG0286|consen 243 AFATGSDDAT 252 (343)
T ss_pred eeeecCCCce
Confidence 7776655543
No 76
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=98.43 E-value=7.4e-05 Score=64.79 Aligned_cols=168 Identities=13% Similarity=0.151 Sum_probs=109.8
Q ss_pred CCCEEEEeeCCCCCCceEEEccCCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEE
Q 018242 22 TQGVVQYQIEGAIGPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGL 101 (359)
Q Consensus 22 ~~~~~~~~~~~~~~p~~i~~~~~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi 101 (359)
...-+|+..|--..-.+|...|-+.....+..++.|..||....+-. ..-...+.| -.
T Consensus 89 dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cq---------------------g~l~~~~~p-i~ 146 (311)
T KOG1446|consen 89 DNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQ---------------------GLLNLSGRP-IA 146 (311)
T ss_pred cCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCc---------------------eEEecCCCc-ce
Confidence 34455888876677779999998885667778889999998754110 111122223 47
Q ss_pred EEecCCCeEEEEeCCC-cEEEEeCCC---CeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeec
Q 018242 102 CFNKTNGDLYIADAYF-GLLKVGPEG---GLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSG 177 (359)
Q Consensus 102 ~~~~~~g~l~v~~~~~-~i~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~ 177 (359)
++|| .|-+++..... .|..||.+. |.++.+.- .......-++|.+++||++|.+++.
T Consensus 147 AfDp-~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i--~~~~~~ew~~l~FS~dGK~iLlsT~---------------- 207 (311)
T KOG1446|consen 147 AFDP-EGLIFALANGSELIKLYDLRSFDKGPFTTFSI--TDNDEAEWTDLEFSPDGKSILLSTN---------------- 207 (311)
T ss_pred eECC-CCcEEEEecCCCeEEEEEecccCCCCceeEcc--CCCCccceeeeEEcCCCCEEEEEeC----------------
Confidence 8999 88888775544 577777653 33333221 1122345678999999998888843
Q ss_pred CCCceEEEEeCCCCcEEEEeC----CCCCCceEEEccCCCEEEEEecCCCEEEEEEcCCC
Q 018242 178 DKTGRLMKYDPATKQVTVLLG----NLSFPNGVALSEDGNYILLAETTSCRILRYWLKTS 233 (359)
Q Consensus 178 ~~~g~v~~~d~~~~~~~~~~~----~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~ 233 (359)
.+.++.+|.=+|.+..-.. ....|-..+++||++. +++.+.+++|..|++..+
T Consensus 208 --~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPds~F-vl~gs~dg~i~vw~~~tg 264 (311)
T KOG1446|consen 208 --ASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTPDSKF-VLSGSDDGTIHVWNLETG 264 (311)
T ss_pred --CCcEEEEEccCCcEeeeEeeccCCCCcceeEEECCCCcE-EEEecCCCcEEEEEcCCC
Confidence 3467888876676543222 2234557789999995 555667899999998543
No 77
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.43 E-value=0.00017 Score=69.12 Aligned_cols=158 Identities=15% Similarity=0.166 Sum_probs=105.2
Q ss_pred CCCCceEEEccCCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEE
Q 018242 33 AIGPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYI 112 (359)
Q Consensus 33 ~~~p~~i~~~~~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v 112 (359)
...-.++++.++|+.+..+..++.|..||......... .+.........++|++ ++++.+
T Consensus 203 ~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~-------------------~l~gH~~~v~~~~f~p-~g~~i~ 262 (456)
T KOG0266|consen 203 TRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLK-------------------TLKGHSTYVTSVAFSP-DGNLLV 262 (456)
T ss_pred ccceeeeEECCCCcEEEEecCCceEEEeeccCCCeEEE-------------------EecCCCCceEEEEecC-CCCEEE
Confidence 44556899999999788889999999999843311110 2223334468899999 556666
Q ss_pred EeCC-CcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCC
Q 018242 113 ADAY-FGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATK 191 (359)
Q Consensus 113 ~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~ 191 (359)
+... ..|..+|.++++....... ....+..+++.++|+ +.++- ...+.|..||..++
T Consensus 263 Sgs~D~tvriWd~~~~~~~~~l~~----hs~~is~~~f~~d~~-~l~s~-----------------s~d~~i~vwd~~~~ 320 (456)
T KOG0266|consen 263 SGSDDGTVRIWDVRTGECVRKLKG----HSDGISGLAFSPDGN-LLVSA-----------------SYDGTIRVWDLETG 320 (456)
T ss_pred EecCCCcEEEEeccCCeEEEeeec----cCCceEEEEECCCCC-EEEEc-----------------CCCccEEEEECCCC
Confidence 6444 4588889998765433221 123577899999999 44442 33567999999988
Q ss_pred cEE--EEeCCCCCC---ceEEEccCCCEEEEEecCCCEEEEEEcCCC
Q 018242 192 QVT--VLLGNLSFP---NGVALSEDGNYILLAETTSCRILRYWLKTS 233 (359)
Q Consensus 192 ~~~--~~~~~~~~p---~gia~~~d~~~l~v~~~~~~~i~~~~~~~~ 233 (359)
... ........+ .-++++|++++++.. ..++.+..|++...
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~-~~d~~~~~w~l~~~ 366 (456)
T KOG0266|consen 321 SKLCLKLLSGAENSAPVTSVQFSPNGKYLLSA-SLDRTLKLWDLRSG 366 (456)
T ss_pred ceeeeecccCCCCCCceeEEEECCCCcEEEEe-cCCCeEEEEEccCC
Confidence 732 222222333 678899999865555 56678888988643
No 78
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=98.43 E-value=0.00021 Score=61.52 Aligned_cols=193 Identities=13% Similarity=0.042 Sum_probs=117.2
Q ss_pred CCCc--eEEEccCCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEE
Q 018242 34 IGPE--SLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLY 111 (359)
Q Consensus 34 ~~p~--~i~~~~~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~ 111 (359)
...+ ..++.|.|+.+..+--++.-.+|+..+..-. +. -| ...++....+......|.+ +++|.
T Consensus 96 ~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d~~---------g~--~~---v~r~l~gHtgylScC~f~d-D~~il 160 (343)
T KOG0286|consen 96 PSSWVMTCAYSPSGNFVACGGLDNKCSIYPLSTRDAE---------GN--VR---VSRELAGHTGYLSCCRFLD-DNHIL 160 (343)
T ss_pred CceeEEEEEECCCCCeEEecCcCceeEEEeccccccc---------cc--ce---eeeeecCccceeEEEEEcC-CCceE
Confidence 3555 4468899994445555555556665532000 00 00 0002223334455666776 78887
Q ss_pred EEeCCCcEEEEeCCCCeEEEEeecCCCccccccceEEEeC-CCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCC
Q 018242 112 IADAYFGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQ-STGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPAT 190 (359)
Q Consensus 112 v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~-~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~ 190 (359)
.+........+|.++++...... + ....+..|.+.| ++| .||+- +-...-..||...
T Consensus 161 T~SGD~TCalWDie~g~~~~~f~---G-H~gDV~slsl~p~~~n-tFvSg-----------------~cD~~aklWD~R~ 218 (343)
T KOG0286|consen 161 TGSGDMTCALWDIETGQQTQVFH---G-HTGDVMSLSLSPSDGN-TFVSG-----------------GCDKSAKLWDVRS 218 (343)
T ss_pred ecCCCceEEEEEcccceEEEEec---C-CcccEEEEecCCCCCC-eEEec-----------------ccccceeeeeccC
Confidence 76544457789999887654322 1 112455778888 899 88882 2234466677665
Q ss_pred CcEE-EEeCCCCCCceEEEccCCCEEEEEecCCCEEEEEEcCCCCCcceeEeec-C-CCCCCceEECCCCCEEEEEecC
Q 018242 191 KQVT-VLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQ-L-PGFPDNIKRSPRGGFWVGIHSR 266 (359)
Q Consensus 191 ~~~~-~~~~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~-~-~~~p~~i~~d~~G~lwv~~~~~ 266 (359)
+... .+..+-.-.|.+.|.|+|. -+++.++++....||+..+. +...|.. . ......++++..|+|..+....
T Consensus 219 ~~c~qtF~ghesDINsv~ffP~G~-afatGSDD~tcRlyDlRaD~--~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d 294 (343)
T KOG0286|consen 219 GQCVQTFEGHESDINSVRFFPSGD-AFATGSDDATCRLYDLRADQ--ELAVYSHDSIICGITSVAFSKSGRLLFAGYDD 294 (343)
T ss_pred cceeEeecccccccceEEEccCCC-eeeecCCCceeEEEeecCCc--EEeeeccCcccCCceeEEEcccccEEEeeecC
Confidence 5544 3445556679999999997 79999999999999987542 2233332 1 1224668999999977765543
No 79
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.41 E-value=0.00033 Score=67.09 Aligned_cols=189 Identities=15% Similarity=0.194 Sum_probs=116.6
Q ss_pred CCceEEEccCCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEEe
Q 018242 35 GPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIAD 114 (359)
Q Consensus 35 ~p~~i~~~~~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~~ 114 (359)
.-.++.+.++|+.+..+..++.+..|+..+.+..... ...........++|++ ++...++.
T Consensus 161 sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~------------------~l~~h~~~v~~~~fs~-d~~~l~s~ 221 (456)
T KOG0266|consen 161 SVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLR------------------ELSGHTRGVSDVAFSP-DGSYLLSG 221 (456)
T ss_pred ceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhc------------------cccccccceeeeEECC-CCcEEEEe
Confidence 3346788999997667777788888887544210000 1112223356889999 67655554
Q ss_pred CC-CcEEEEeCCCC-eE-EEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCC
Q 018242 115 AY-FGLLKVGPEGG-LA-TAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATK 191 (359)
Q Consensus 115 ~~-~~i~~~~~~~~-~~-~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~ 191 (359)
.. ..|..+|.+.+ .. +.+.. ....++.++++++|+ +.++- +..+.|..||..++
T Consensus 222 s~D~tiriwd~~~~~~~~~~l~g-----H~~~v~~~~f~p~g~-~i~Sg-----------------s~D~tvriWd~~~~ 278 (456)
T KOG0266|consen 222 SDDKTLRIWDLKDDGRNLKTLKG-----HSTYVTSVAFSPDGN-LLVSG-----------------SDDGTVRIWDVRTG 278 (456)
T ss_pred cCCceEEEeeccCCCeEEEEecC-----CCCceEEEEecCCCC-EEEEe-----------------cCCCcEEEEeccCC
Confidence 33 45777888333 32 22221 123568999999998 77762 34678999999887
Q ss_pred cEEEEe-CCCCCCceEEEccCCCEEEEEecCCCEEEEEEcCCCCCcceeEeec--CCCCCCceEECCCCCEEEEEecC
Q 018242 192 QVTVLL-GNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQ--LPGFPDNIKRSPRGGFWVGIHSR 266 (359)
Q Consensus 192 ~~~~~~-~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~--~~~~p~~i~~d~~G~lwv~~~~~ 266 (359)
+..... .+-....++++.+|++. +++.+.++.|..||+........+.+.. .+.....+.++++|...+.....
T Consensus 279 ~~~~~l~~hs~~is~~~f~~d~~~-l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d 355 (456)
T KOG0266|consen 279 ECVRKLKGHSDGISGLAFSPDGNL-LVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLD 355 (456)
T ss_pred eEEEeeeccCCceEEEEECCCCCE-EEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCC
Confidence 665543 44456689999999985 4555778999999986543110112222 11112567889999744444443
No 80
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=98.40 E-value=4.9e-05 Score=73.04 Aligned_cols=206 Identities=17% Similarity=0.153 Sum_probs=131.4
Q ss_pred CCCceEEEccCCCeeEEecCCCEEEEEEcCCc-ceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEE
Q 018242 34 IGPESLAFDALGEGPYTGVSDGRIIKWHQDQR-RWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYI 112 (359)
Q Consensus 34 ~~p~~i~~~~~G~~l~~~~~~~~i~~~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v 112 (359)
.+-.++.+...|+.++.++-+|.+..||.+.. .+++|..| .......+++|+ .|.|.+
T Consensus 393 s~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P--------------------~p~QfscvavD~-sGelV~ 451 (893)
T KOG0291|consen 393 SGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSP--------------------EPIQFSCVAVDP-SGELVC 451 (893)
T ss_pred CceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCC--------------------CceeeeEEEEcC-CCCEEE
Confidence 34557889999998999999999999999864 25555311 112235788898 888888
Q ss_pred EeCCC--cEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeC--
Q 018242 113 ADAYF--GLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDP-- 188 (359)
Q Consensus 113 ~~~~~--~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~-- 188 (359)
+...+ .|+.++.++|+...+.. +. ..-+.++.+++.|. +.++- +++-.|-.||.
T Consensus 452 AG~~d~F~IfvWS~qTGqllDiLs---GH-EgPVs~l~f~~~~~-~LaS~-----------------SWDkTVRiW~if~ 509 (893)
T KOG0291|consen 452 AGAQDSFEIFVWSVQTGQLLDILS---GH-EGPVSGLSFSPDGS-LLASG-----------------SWDKTVRIWDIFS 509 (893)
T ss_pred eeccceEEEEEEEeecCeeeehhc---CC-CCcceeeEEccccC-eEEec-----------------cccceEEEEEeec
Confidence 76554 59999999998654332 21 12456899999999 66652 23334554443
Q ss_pred CCCcEEEEeCCCCCCceEEEccCCCEEEEEecCCCEEEEEEcCCCC-CcceeE-------------ee-c---CCCCCCc
Q 018242 189 ATKQVTVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSK-AGTIEI-------------VA-Q---LPGFPDN 250 (359)
Q Consensus 189 ~~~~~~~~~~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~-~~~~~~-------------~~-~---~~~~p~~ 250 (359)
..++++++. ...-.-+++|.|||+.+-|+. .++.|..||..... .+..+. +. . .......
T Consensus 510 s~~~vEtl~-i~sdvl~vsfrPdG~elaVaT-ldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftt 587 (893)
T KOG0291|consen 510 SSGTVETLE-IRSDVLAVSFRPDGKELAVAT-LDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTT 587 (893)
T ss_pred cCceeeeEe-eccceeEEEEcCCCCeEEEEE-ecceEEEEEhhhceeeccccchhhccccccccceeehhhcccCCceEE
Confidence 334565543 223356889999999877764 56789999975321 111110 10 0 0122344
Q ss_pred eEECCCCCEEEEEecCCCccccccccCC-ccceeeecCCc
Q 018242 251 IKRSPRGGFWVGIHSRRKGISKLVLSFP-WIGNVLIKLPI 289 (359)
Q Consensus 251 i~~d~~G~lwv~~~~~~~~~~~~~~~~~-~~g~~~~~~~~ 289 (359)
|+.++||...++...+.. +..++ +++.+++++.+
T Consensus 588 i~ySaDG~~IlAgG~sn~-----iCiY~v~~~vllkkfqi 622 (893)
T KOG0291|consen 588 ICYSADGKCILAGGESNS-----ICIYDVPEGVLLKKFQI 622 (893)
T ss_pred EEEcCCCCEEEecCCccc-----EEEEECchhheeeeEEe
Confidence 888999987776655553 55554 57777776543
No 81
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=98.39 E-value=0.00033 Score=59.42 Aligned_cols=184 Identities=15% Similarity=0.148 Sum_probs=110.3
Q ss_pred CCCCceEEEccCCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEE
Q 018242 33 AIGPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYI 112 (359)
Q Consensus 33 ~~~p~~i~~~~~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v 112 (359)
.+.-+++++..+|+.+..+..++.+..|+.+...+..-. ...........++.++....+++
T Consensus 20 ~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~------------------~~~gh~~svdql~w~~~~~d~~a 81 (313)
T KOG1407|consen 20 VQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKEL------------------VYRGHTDSVDQLCWDPKHPDLFA 81 (313)
T ss_pred hhcceEEEEcccCceeeecccCCceEEEEecchhhhhhh------------------cccCCCcchhhheeCCCCCcceE
Confidence 456679999999998999999999999988765322110 11112223446778876777777
Q ss_pred EeCC-CcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCC
Q 018242 113 ADAY-FGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATK 191 (359)
Q Consensus 113 ~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~ 191 (359)
+... ..|.++|...++....... .+ .-..+.+.|+|+++-++ .+...|..+|..+.
T Consensus 82 tas~dk~ir~wd~r~~k~~~~i~~-~~----eni~i~wsp~g~~~~~~------------------~kdD~it~id~r~~ 138 (313)
T KOG1407|consen 82 TASGDKTIRIWDIRSGKCTARIET-KG----ENINITWSPDGEYIAVG------------------NKDDRITFIDARTY 138 (313)
T ss_pred EecCCceEEEEEeccCcEEEEeec-cC----cceEEEEcCCCCEEEEe------------------cCcccEEEEEeccc
Confidence 6544 4588889887765433221 11 11247889999955554 22335666776533
Q ss_pred cEEEEeCCCCCCceEEEccCCCEEEEEecCCCEEEEEEcCCCCCcceeEeecCCCCCCc---eEECCCCCEEEEE
Q 018242 192 QVTVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDN---IKRSPRGGFWVGI 263 (359)
Q Consensus 192 ~~~~~~~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~---i~~d~~G~lwv~~ 263 (359)
+...-.+-....+-+++..+++ +++..++.++|...... .+ +.+..+...|.+ |.+||+|+.+.+.
T Consensus 139 ~~~~~~~~~~e~ne~~w~~~nd-~Fflt~GlG~v~ILsyp--sL---kpv~si~AH~snCicI~f~p~GryfA~G 207 (313)
T KOG1407|consen 139 KIVNEEQFKFEVNEISWNNSND-LFFLTNGLGCVEILSYP--SL---KPVQSIKAHPSNCICIEFDPDGRYFATG 207 (313)
T ss_pred ceeehhcccceeeeeeecCCCC-EEEEecCCceEEEEecc--cc---ccccccccCCcceEEEEECCCCceEeec
Confidence 3221111123356788876665 78887788888776532 22 222223334544 7889999866633
No 82
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=98.39 E-value=7.5e-06 Score=74.56 Aligned_cols=214 Identities=12% Similarity=0.130 Sum_probs=134.6
Q ss_pred EEeeCCCCCCceEEEccCCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecC
Q 018242 27 QYQIEGAIGPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKT 106 (359)
Q Consensus 27 ~~~~~~~~~p~~i~~~~~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~ 106 (359)
|-..+--..-.++.+..+|..+..+..+..|-.||.+|+.... .+ .....|..+-+.|+
T Consensus 252 rtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~--------------------~f-~~~~~~~cvkf~pd 310 (503)
T KOG0282|consen 252 RTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTETGQVLS--------------------RF-HLDKVPTCVKFHPD 310 (503)
T ss_pred hhhhcchhhhhhhhccccCCeeeeeecceeeeeeccccceEEE--------------------EE-ecCCCceeeecCCC
Confidence 3333333344588999999988888999999999999985332 11 12234677788897
Q ss_pred CCeEEEEeC-CCcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEE
Q 018242 107 NGDLYIADA-YFGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMK 185 (359)
Q Consensus 107 ~g~l~v~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~ 185 (359)
+.++|++.. .+.|..+|..++++.+-+. .....++.+.+-++|+ -+|+.+. .+.+..
T Consensus 311 ~~n~fl~G~sd~ki~~wDiRs~kvvqeYd----~hLg~i~~i~F~~~g~-rFissSD-----------------dks~ri 368 (503)
T KOG0282|consen 311 NQNIFLVGGSDKKIRQWDIRSGKVVQEYD----RHLGAILDITFVDEGR-RFISSSD-----------------DKSVRI 368 (503)
T ss_pred CCcEEEEecCCCcEEEEeccchHHHHHHH----hhhhheeeeEEccCCc-eEeeecc-----------------CccEEE
Confidence 768777654 4469999999887532111 1345678899999999 6666332 234555
Q ss_pred EeCCCCcEEE-Ee-CCCCCCceEEEccCCCEEEEEecCCCEEEEEEcCCC-CCcceeEeec--CCCCCCceEECCCCCEE
Q 018242 186 YDPATKQVTV-LL-GNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTS-KAGTIEIVAQ--LPGFPDNIKRSPRGGFW 260 (359)
Q Consensus 186 ~d~~~~~~~~-~~-~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~-~~~~~~~~~~--~~~~p~~i~~d~~G~lw 260 (359)
|+-....... +. .....---+++.|.++ .+.+.+-+++|..|..... +....+.|.. .+|++-.+.+++||...
T Consensus 369 We~~~~v~ik~i~~~~~hsmP~~~~~P~~~-~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l 447 (503)
T KOG0282|consen 369 WENRIPVPIKNIADPEMHTMPCLTLHPNGK-WFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTL 447 (503)
T ss_pred EEcCCCccchhhcchhhccCcceecCCCCC-eehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCCeE
Confidence 5543322111 11 1112223567778887 5777788899999986543 3333444543 57888889999999877
Q ss_pred EEEecCCCccccccccCCc-cceeeecCCc
Q 018242 261 VGIHSRRKGISKLVLSFPW-IGNVLIKLPI 289 (359)
Q Consensus 261 v~~~~~~~~~~~~~~~~~~-~g~~~~~~~~ 289 (359)
+.....+. +..++. .-+++..+..
T Consensus 448 ~SGdsdG~-----v~~wdwkt~kl~~~lka 472 (503)
T KOG0282|consen 448 CSGDSDGK-----VNFWDWKTTKLVSKLKA 472 (503)
T ss_pred EeecCCcc-----EEEeechhhhhhhcccc
Confidence 75555554 555553 4445555443
No 83
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=98.38 E-value=5.9e-06 Score=75.54 Aligned_cols=166 Identities=20% Similarity=0.272 Sum_probs=87.1
Q ss_pred CcceEEEEecCCCeEEEEeC--C------------CcEEEEeCCCCeEEEEeecC----------CCccccccceEEEeC
Q 018242 96 GRPLGLCFNKTNGDLYIADA--Y------------FGLLKVGPEGGLATAVATQS----------EGIPFRFCNSLDIDQ 151 (359)
Q Consensus 96 ~~p~gi~~~~~~g~l~v~~~--~------------~~i~~~~~~~~~~~~~~~~~----------~~~~~~~~~~l~~d~ 151 (359)
+...+|+|++ +|.||++.. . +.|+|+++++.... .... -...+..|.++++|+
T Consensus 114 H~g~~l~fgp-DG~LYvs~G~~~~~~~~~~~~~~~G~ilri~~dG~~p~--dnP~~~~~~~~~~i~A~GlRN~~~~~~d~ 190 (331)
T PF07995_consen 114 HNGGGLAFGP-DGKLYVSVGDGGNDDNAQDPNSLRGKILRIDPDGSIPA--DNPFVGDDGADSEIYAYGLRNPFGLAFDP 190 (331)
T ss_dssp S-EEEEEE-T-TSEEEEEEB-TTTGGGGCSTTSSTTEEEEEETTSSB-T--TSTTTTSTTSTTTEEEE--SEEEEEEEET
T ss_pred CCCccccCCC-CCcEEEEeCCCCCcccccccccccceEEEecccCcCCC--CCccccCCCceEEEEEeCCCccccEEEEC
Confidence 3456799999 889999852 1 13888887653100 0000 011356889999999
Q ss_pred C-CCEEEEEeCCCccccccceeeeeecCCCceEEE----------E---eCCCCcEEE--EeCCCCCCceEEEccCC---
Q 018242 152 S-TGIIYFTDSSSQFQRRNHISVILSGDKTGRLMK----------Y---DPATKQVTV--LLGNLSFPNGVALSEDG--- 212 (359)
Q Consensus 152 ~-g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~----------~---d~~~~~~~~--~~~~~~~p~gia~~~d~--- 212 (359)
. |+ ||++|.+.+.. +....+..+...|--++ + ......... ....-..|.|+.+....
T Consensus 191 ~tg~-l~~~d~G~~~~--dein~i~~G~nYGWP~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~ap~G~~~y~g~~fp 267 (331)
T PF07995_consen 191 NTGR-LWAADNGPDGW--DEINRIEPGGNYGWPYCEGGPKYSGPPIGDAPSCPGFVPPVFAYPPHSAPTGIIFYRGSAFP 267 (331)
T ss_dssp TTTE-EEEEEE-SSSS--EEEEEE-TT-B--TTTBSSSCSTTSS-ECTGSS-TTS---SEEETTT--EEEEEEE-SSSSG
T ss_pred CCCc-EEEEccCCCCC--cEEEEeccCCcCCCCCCcCCCCCCCCccccccCCCCcCccceeecCccccCceEEECCccCc
Confidence 9 88 99998664321 00011101110010000 0 000000011 11222457788876432
Q ss_pred ---CEEEEEecCCCEEEEEEcCCC-CCcceeEeec-CCCCCCceEECCCCCEEEEEecCC
Q 018242 213 ---NYILLAETTSCRILRYWLKTS-KAGTIEIVAQ-LPGFPDNIKRSPRGGFWVGIHSRR 267 (359)
Q Consensus 213 ---~~l~v~~~~~~~i~~~~~~~~-~~~~~~~~~~-~~~~p~~i~~d~~G~lwv~~~~~~ 267 (359)
..+++++....+|+++.++.+ .....+.+.. ....|.++++++||.||+++...+
T Consensus 268 ~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG~Lyv~~d~~G 327 (331)
T PF07995_consen 268 EYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDGALYVSDDSDG 327 (331)
T ss_dssp GGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTSEEEEEE-TTT
T ss_pred cccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCCCeEEEEECCCC
Confidence 248899988899999998644 2333333333 444688999999999999987544
No 84
>PLN00181 protein SPA1-RELATED; Provisional
Probab=98.38 E-value=0.0013 Score=67.68 Aligned_cols=162 Identities=10% Similarity=-0.001 Sum_probs=94.5
Q ss_pred CceEEEccCCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEE-e
Q 018242 36 PESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIA-D 114 (359)
Q Consensus 36 p~~i~~~~~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~-~ 114 (359)
-.+++++++|+++.++..++.|..|+..+....... ...| ..... .......+++.+..+...++ .
T Consensus 486 V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~--------~~~~----~~~~~-~~~~v~~l~~~~~~~~~las~~ 552 (793)
T PLN00181 486 VCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRD--------IHYP----VVELA-SRSKLSGICWNSYIKSQVASSN 552 (793)
T ss_pred EEEEEECCCCCEEEEEeCCCEEEEEECCcccccccc--------cccc----eEEec-ccCceeeEEeccCCCCEEEEEe
Confidence 457899999997778888999999997542000000 0000 00111 11234567777644554444 4
Q ss_pred CCCcEEEEeCCCCeEEEEeecCCCccccccceEEEeC-CCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCCcE
Q 018242 115 AYFGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQ-STGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQV 193 (359)
Q Consensus 115 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~-~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~ 193 (359)
..+.|..+|..+++...... + ....+..+++++ +++ ++++- +..+.|..||..++..
T Consensus 553 ~Dg~v~lWd~~~~~~~~~~~---~-H~~~V~~l~~~p~~~~-~L~Sg-----------------s~Dg~v~iWd~~~~~~ 610 (793)
T PLN00181 553 FEGVVQVWDVARSQLVTEMK---E-HEKRVWSIDYSSADPT-LLASG-----------------SDDGSVKLWSINQGVS 610 (793)
T ss_pred CCCeEEEEECCCCeEEEEec---C-CCCCEEEEEEcCCCCC-EEEEE-----------------cCCCEEEEEECCCCcE
Confidence 44457788988765432211 1 123577899986 677 55552 3356788899876554
Q ss_pred EEEeCCCCCCceEEEcc-CCCEEEEEecCCCEEEEEEcCCC
Q 018242 194 TVLLGNLSFPNGVALSE-DGNYILLAETTSCRILRYWLKTS 233 (359)
Q Consensus 194 ~~~~~~~~~p~gia~~~-d~~~l~v~~~~~~~i~~~~~~~~ 233 (359)
............+.+.+ +++ .+++...++.|..||+...
T Consensus 611 ~~~~~~~~~v~~v~~~~~~g~-~latgs~dg~I~iwD~~~~ 650 (793)
T PLN00181 611 IGTIKTKANICCVQFPSESGR-SLAFGSADHKVYYYDLRNP 650 (793)
T ss_pred EEEEecCCCeEEEEEeCCCCC-EEEEEeCCCeEEEEECCCC
Confidence 33222223345666644 565 5666778889999998643
No 85
>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides. The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity
Probab=98.36 E-value=2.4e-06 Score=60.82 Aligned_cols=81 Identities=23% Similarity=0.337 Sum_probs=57.7
Q ss_pred eEEEeCCCCEEEEEeCCCccccccc--eeeeeecCCCceEEEEeCCCCcEEEEeCCCCCCceEEEccCCCEEEEEecCCC
Q 018242 146 SLDIDQSTGIIYFTDSSSQFQRRNH--ISVILSGDKTGRLMKYDPATKQVTVLLGNLSFPNGVALSEDGNYILLAETTSC 223 (359)
Q Consensus 146 ~l~~d~~g~~l~v~d~~~~~~~~~~--~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~p~gia~~~d~~~l~v~~~~~~ 223 (359)
+|+.-...+ +|+|+.... ...+ ..|...+...+.|..+|++ +.+.+..++..|+||+++|+++.+||++...+
T Consensus 2 DIvavG~~s-Fy~TNDhyf--~~~~l~~lE~~l~~~~~~Vvyyd~~--~~~~va~g~~~aNGI~~s~~~k~lyVa~~~~~ 76 (86)
T PF01731_consen 2 DIVAVGPDS-FYVTNDHYF--TDPFLRLLETYLGLPWGNVVYYDGK--EVKVVASGFSFANGIAISPDKKYLYVASSLAH 76 (86)
T ss_pred CEEEECcCc-EEEECchhh--CcHHHHHHHHHhcCCCceEEEEeCC--EeEEeeccCCCCceEEEcCCCCEEEEEeccCC
Confidence 444444445 888865421 1111 1122334456789999985 67777888999999999999999999999999
Q ss_pred EEEEEEcC
Q 018242 224 RILRYWLK 231 (359)
Q Consensus 224 ~i~~~~~~ 231 (359)
.|.+|..+
T Consensus 77 ~I~vy~~~ 84 (86)
T PF01731_consen 77 SIHVYKRH 84 (86)
T ss_pred eEEEEEec
Confidence 99999864
No 86
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=98.36 E-value=0.0008 Score=63.68 Aligned_cols=143 Identities=15% Similarity=0.098 Sum_probs=84.5
Q ss_pred eEEEEecCCCeEEEEeCC---CcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeee
Q 018242 99 LGLCFNKTNGDLYIADAY---FGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVIL 175 (359)
Q Consensus 99 ~gi~~~~~~g~l~v~~~~---~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~ 175 (359)
....+++++..|+++... ..|+.++..+++.+.+.. .. .....+.++|||++|+++...
T Consensus 193 ~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~-~~----~~~~~~~~spDg~~l~~~~~~------------- 254 (417)
T TIGR02800 193 LSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVAS-FP----GMNGAPAFSPDGSKLAVSLSK------------- 254 (417)
T ss_pred ecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeec-CC----CCccceEECCCCCEEEEEECC-------------
Confidence 345678855556555433 248899998886554432 11 123457899999877776321
Q ss_pred ecCCCceEEEEeCCCCcEEEEeCCCCCCceEEEccCCCEEEEEecCC--CEEEEEEcCCCCCcceeEeecCCCCCCceEE
Q 018242 176 SGDKTGRLMKYDPATKQVTVLLGNLSFPNGVALSEDGNYILLAETTS--CRILRYWLKTSKAGTIEIVAQLPGFPDNIKR 253 (359)
Q Consensus 176 ~~~~~g~v~~~d~~~~~~~~~~~~~~~p~gia~~~d~~~l~v~~~~~--~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~ 253 (359)
.....|+.++..++..+.+..........++++|++.++++.... ..|+.+++.+.+ .+.+...........+
T Consensus 255 --~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~---~~~l~~~~~~~~~~~~ 329 (417)
T TIGR02800 255 --DGNPDIYVMDLDGKQLTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGE---VRRLTFRGGYNASPSW 329 (417)
T ss_pred --CCCccEEEEECCCCCEEECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCC---EEEeecCCCCccCeEE
Confidence 112369999988776665533222233567899999876654432 378888876432 2222222223456788
Q ss_pred CCCCCEEE-EEe
Q 018242 254 SPRGGFWV-GIH 264 (359)
Q Consensus 254 d~~G~lwv-~~~ 264 (359)
+++|+..+ +..
T Consensus 330 spdg~~i~~~~~ 341 (417)
T TIGR02800 330 SPDGDLIAFVHR 341 (417)
T ss_pred CCCCCEEEEEEc
Confidence 88887444 443
No 87
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=98.35 E-value=0.00032 Score=64.65 Aligned_cols=216 Identities=15% Similarity=0.117 Sum_probs=123.8
Q ss_pred CCceEEEccCCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEEe
Q 018242 35 GPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIAD 114 (359)
Q Consensus 35 ~p~~i~~~~~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~~ 114 (359)
.--+++|.++|. ..++..+|.|..|++.+..+..- .. ...+...+++... +|.|.-+.
T Consensus 248 ~Vl~v~F~engd-viTgDS~G~i~Iw~~~~~~~~k~-------------------~~-aH~ggv~~L~~lr-~GtllSGg 305 (626)
T KOG2106|consen 248 FVLCVTFLENGD-VITGDSGGNILIWSKGTNRISKQ-------------------VH-AHDGGVFSLCMLR-DGTLLSGG 305 (626)
T ss_pred EEEEEEEcCCCC-EEeecCCceEEEEeCCCceEEeE-------------------ee-ecCCceEEEEEec-CccEeecC
Confidence 444899999999 88888889999999988754431 11 2223455677777 88887754
Q ss_pred CCCcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCCcEE
Q 018242 115 AYFGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQVT 194 (359)
Q Consensus 115 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~ 194 (359)
....|..+|-+-.+.+.. ..+ .....+..++.. .+. +||+.+. ..|..=+.+++-..
T Consensus 306 KDRki~~Wd~~y~k~r~~--elP-e~~G~iRtv~e~-~~d-i~vGTtr------------------N~iL~Gt~~~~f~~ 362 (626)
T KOG2106|consen 306 KDRKIILWDDNYRKLRET--ELP-EQFGPIRTVAEG-KGD-ILVGTTR------------------NFILQGTLENGFTL 362 (626)
T ss_pred ccceEEeccccccccccc--cCc-hhcCCeeEEecC-CCc-EEEeecc------------------ceEEEeeecCCceE
Confidence 334577776322222111 111 123344455543 344 8998554 23444444433333
Q ss_pred EEeCCCCCCceEEEccCCCEEEEEecCCCEEEEEEcCCCCCcceeEeec-CCCCCCceEECCCCCEEEEEecCCCccccc
Q 018242 195 VLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQ-LPGFPDNIKRSPRGGFWVGIHSRRKGISKL 273 (359)
Q Consensus 195 ~~~~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~p~~i~~d~~G~lwv~~~~~~~~~~~~ 273 (359)
.+......-.|+|..|+.+ +|++...+..+..|+ ..+. .+.. ....-....+++.|-+-+++..++.
T Consensus 363 ~v~gh~delwgla~hps~~-q~~T~gqdk~v~lW~--~~k~----~wt~~~~d~~~~~~fhpsg~va~Gt~~G~w----- 430 (626)
T KOG2106|consen 363 TVQGHGDELWGLATHPSKN-QLLTCGQDKHVRLWN--DHKL----EWTKIIEDPAECADFHPSGVVAVGTATGRW----- 430 (626)
T ss_pred EEEecccceeeEEcCCChh-heeeccCcceEEEcc--CCce----eEEEEecCceeEeeccCcceEEEeeccceE-----
Confidence 3344444667999999876 688888888888887 2222 2222 1111245778888866666665442
Q ss_pred cccCCccceeeecCCccceeeeeecccccCcceEEEEECCCCCEEEE
Q 018242 274 VLSFPWIGNVLIKLPIDIVKIHSSLVKLSGNGGMAMRISEQGNVLEI 320 (359)
Q Consensus 274 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 320 (359)
++...++..++.. ... .++ -.+++|+|+|..+..
T Consensus 431 ~V~d~e~~~lv~~-~~d-----------~~~-ls~v~ysp~G~~lAv 464 (626)
T KOG2106|consen 431 FVLDTETQDLVTI-HTD-----------NEQ-LSVVRYSPDGAFLAV 464 (626)
T ss_pred EEEecccceeEEE-Eec-----------CCc-eEEEEEcCCCCEEEE
Confidence 4444444333321 110 122 457888888877654
No 88
>PRK01029 tolB translocation protein TolB; Provisional
Probab=98.34 E-value=0.00088 Score=63.59 Aligned_cols=183 Identities=14% Similarity=0.077 Sum_probs=99.8
Q ss_pred eEEEccCCC---eeEEecCC--CEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEE
Q 018242 38 SLAFDALGE---GPYTGVSD--GRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYI 112 (359)
Q Consensus 38 ~i~~~~~G~---~l~~~~~~--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v 112 (359)
...++|||+ ++|++..+ ..|+..+..+++.+.+. ...+......++|++..|.+
T Consensus 189 sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt---------------------~~~g~~~~p~wSPDG~~Laf 247 (428)
T PRK01029 189 TPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKIL---------------------ALQGNQLMPTFSPRKKLLAF 247 (428)
T ss_pred cceEccCCCceEEEEEEccCCCceEEEEECCCCCceEee---------------------cCCCCccceEECCCCCEEEE
Confidence 457999986 34566554 47999998877544432 11122334678885556655
Q ss_pred EeCC-C--cEEE--EeCCC---CeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEE
Q 018242 113 ADAY-F--GLLK--VGPEG---GLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLM 184 (359)
Q Consensus 113 ~~~~-~--~i~~--~~~~~---~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~ 184 (359)
+... + .++. ++..+ ++.+.+... .........++|||++|+++... .....||
T Consensus 248 ~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~----~~~~~~~p~wSPDG~~Laf~s~~---------------~g~~~ly 308 (428)
T PRK01029 248 ISDRYGNPDLFIQSFSLETGAIGKPRRLLNE----AFGTQGNPSFSPDGTRLVFVSNK---------------DGRPRIY 308 (428)
T ss_pred EECCCCCcceeEEEeecccCCCCcceEeecC----CCCCcCCeEECCCCCEEEEEECC---------------CCCceEE
Confidence 4322 1 3444 45443 233333211 11122356899999966665221 1122578
Q ss_pred EEeCC--CCcEEEEeCCCCCCceEEEccCCCEEEEEecCC--CEEEEEEcCCCCCcceeEeecCCCCCCceEECCCCC-E
Q 018242 185 KYDPA--TKQVTVLLGNLSFPNGVALSEDGNYILLAETTS--CRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGG-F 259 (359)
Q Consensus 185 ~~d~~--~~~~~~~~~~~~~p~gia~~~d~~~l~v~~~~~--~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~-l 259 (359)
.++.+ ++..+.+..........+++|||+.++++.... ..|+++++++.+ .+.+........+..++++|+ |
T Consensus 309 ~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~---~~~Lt~~~~~~~~p~wSpDG~~L 385 (428)
T PRK01029 309 IMQIDPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGR---DYQLTTSPENKESPSWAIDSLHL 385 (428)
T ss_pred EEECcccccceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCC---eEEccCCCCCccceEECCCCCEE
Confidence 77654 233333322222335678999999877765443 479999876542 222222222345678888886 4
Q ss_pred EEEE
Q 018242 260 WVGI 263 (359)
Q Consensus 260 wv~~ 263 (359)
+++.
T Consensus 386 ~f~~ 389 (428)
T PRK01029 386 VYSA 389 (428)
T ss_pred EEEE
Confidence 4443
No 89
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.32 E-value=0.0019 Score=57.19 Aligned_cols=108 Identities=18% Similarity=0.161 Sum_probs=70.6
Q ss_pred CcceEEEEecCCCeEEEEeCCCc--EEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceee
Q 018242 96 GRPLGLCFNKTNGDLYIADAYFG--LLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISV 173 (359)
Q Consensus 96 ~~p~gi~~~~~~g~l~v~~~~~~--i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~ 173 (359)
.+.++++.+|.+....+....-| .+++|..+++........++. .+--.-++++||++||.++...
T Consensus 5 ~RgH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gR--HFyGHg~fs~dG~~LytTEnd~---------- 72 (305)
T PF07433_consen 5 ARGHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGR--HFYGHGVFSPDGRLLYTTENDY---------- 72 (305)
T ss_pred ccccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCC--EEecCEEEcCCCCEEEEecccc----------
Confidence 34567888885555444333333 788999988765543322221 1222468999999899885431
Q ss_pred eeecCCCceEEEEeCCCCcEE---EEeCCCCCCceEEEccCCCEEEEEe
Q 018242 174 ILSGDKTGRLMKYDPATKQVT---VLLGNLSFPNGVALSEDGNYILLAE 219 (359)
Q Consensus 174 ~~~~~~~g~v~~~d~~~~~~~---~~~~~~~~p~gia~~~d~~~l~v~~ 219 (359)
.+..|.|.+||... .++ .+......|..+.+.|||++|.|++
T Consensus 73 ---~~g~G~IgVyd~~~-~~~ri~E~~s~GIGPHel~l~pDG~tLvVAN 117 (305)
T PF07433_consen 73 ---ETGRGVIGVYDAAR-GYRRIGEFPSHGIGPHELLLMPDGETLVVAN 117 (305)
T ss_pred ---CCCcEEEEEEECcC-CcEEEeEecCCCcChhhEEEcCCCCEEEEEc
Confidence 13457788899873 333 3445667899999999999899986
No 90
>PRK01742 tolB translocation protein TolB; Provisional
Probab=98.31 E-value=0.00064 Score=64.68 Aligned_cols=138 Identities=16% Similarity=0.123 Sum_probs=81.0
Q ss_pred ceEEEEecCCCeEEEEeCCC---cEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeee
Q 018242 98 PLGLCFNKTNGDLYIADAYF---GLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVI 174 (359)
Q Consensus 98 p~gi~~~~~~g~l~v~~~~~---~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~ 174 (359)
.....++|++..|..+...+ .|+.+|.++++.+.+.. ..+ ....++++|||++|.++...
T Consensus 206 v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~-~~g----~~~~~~wSPDG~~La~~~~~------------ 268 (429)
T PRK01742 206 LMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVAS-FRG----HNGAPAFSPDGSRLAFASSK------------ 268 (429)
T ss_pred cccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEec-CCC----ccCceeECCCCCEEEEEEec------------
Confidence 34677899555565543322 48899998876554432 111 12357999999967665211
Q ss_pred eecCCCceEEEEeCCCCcEEEEeCCCCCCceEEEccCCCEEEEEecCCC--EEEEEEcCCCCCcceeEeecCCCCCCceE
Q 018242 175 LSGDKTGRLMKYDPATKQVTVLLGNLSFPNGVALSEDGNYILLAETTSC--RILRYWLKTSKAGTIEIVAQLPGFPDNIK 252 (359)
Q Consensus 175 ~~~~~~g~v~~~d~~~~~~~~~~~~~~~p~gia~~~d~~~l~v~~~~~~--~i~~~~~~~~~~~~~~~~~~~~~~p~~i~ 252 (359)
...-.||.+|.+++..+.+..........+++|||+.++++....+ .|+.++..+.. .+.+ ...+ .+..
T Consensus 269 ---~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~---~~~l-~~~~--~~~~ 339 (429)
T PRK01742 269 ---DGVLNIYVMGANGGTPSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGG---ASLV-GGRG--YSAQ 339 (429)
T ss_pred ---CCcEEEEEEECCCCCeEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCC---eEEe-cCCC--CCcc
Confidence 1122589999887776665443334567899999998776654434 55555543321 1222 2111 3466
Q ss_pred ECCCCCEEE
Q 018242 253 RSPRGGFWV 261 (359)
Q Consensus 253 ~d~~G~lwv 261 (359)
++++|+..+
T Consensus 340 ~SpDG~~ia 348 (429)
T PRK01742 340 ISADGKTLV 348 (429)
T ss_pred CCCCCCEEE
Confidence 788887443
No 91
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=98.30 E-value=8.2e-05 Score=67.64 Aligned_cols=209 Identities=8% Similarity=0.038 Sum_probs=125.7
Q ss_pred eEEEccCCC-eeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEEeCC
Q 018242 38 SLAFDALGE-GPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIADAY 116 (359)
Q Consensus 38 ~i~~~~~G~-~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~~~~ 116 (359)
..+|.|+|. +++++....-+|.||..+.++..+..+. ..+. ....-..+++++..|.+....
T Consensus 262 ~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~k~~~~~---------------g~e~--~~~e~FeVShd~~fia~~G~~ 324 (514)
T KOG2055|consen 262 KAEFAPNGHSVIFTSGRRKYLYSYDLETAKVTKLKPPY---------------GVEE--KSMERFEVSHDSNFIAIAGNN 324 (514)
T ss_pred eeeecCCCceEEEecccceEEEEeeccccccccccCCC---------------Cccc--chhheeEecCCCCeEEEcccC
Confidence 667888998 8889888899999999988766654211 1110 012235567744444443333
Q ss_pred CcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCCcEEEE
Q 018242 117 FGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQVTVL 196 (359)
Q Consensus 117 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~ 196 (359)
+-|..+..+++++..-.. + ...+.+++++.+|+.||++ ..+|.||.+|.....+...
T Consensus 325 G~I~lLhakT~eli~s~K-i----eG~v~~~~fsSdsk~l~~~------------------~~~GeV~v~nl~~~~~~~r 381 (514)
T KOG2055|consen 325 GHIHLLHAKTKELITSFK-I----EGVVSDFTFSSDSKELLAS------------------GGTGEVYVWNLRQNSCLHR 381 (514)
T ss_pred ceEEeehhhhhhhhheee-e----ccEEeeEEEecCCcEEEEE------------------cCCceEEEEecCCcceEEE
Confidence 348888877776422111 1 1356788999999988887 3357899999987655533
Q ss_pred e--CCCCCCceEEEccCCCEEEEEecCCCEEEEEEcCCCCC-cceeEe---ecCCCCCCceEECCCCCEEE-EEecCCCc
Q 018242 197 L--GNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKA-GTIEIV---AQLPGFPDNIKRSPRGGFWV-GIHSRRKG 269 (359)
Q Consensus 197 ~--~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~-~~~~~~---~~~~~~p~~i~~d~~G~lwv-~~~~~~~~ 269 (359)
. .+.-.-..+|++.++. ++.+++..+-|-.|+.+.-.. +..+.. .++..-...|.+.+++.|.. ++......
T Consensus 382 f~D~G~v~gts~~~S~ng~-ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~kna 460 (514)
T KOG2055|consen 382 FVDDGSVHGTSLCISLNGS-YLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQILAIASRVKKNA 460 (514)
T ss_pred EeecCccceeeeeecCCCc-eEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcchhhhhhhhhccccc
Confidence 2 3333446678888887 677788888888888543211 112222 12333356789999887665 55443221
Q ss_pred cccccccCCccceeeecCCcc
Q 018242 270 ISKLVLSFPWIGNVLIKLPID 290 (359)
Q Consensus 270 ~~~~~~~~~~~g~~~~~~~~~ 290 (359)
+. ++. -|.-.++.++|..
T Consensus 461 -lr-LVH-vPS~TVFsNfP~~ 478 (514)
T KOG2055|consen 461 -LR-LVH-VPSCTVFSNFPTS 478 (514)
T ss_pred -eE-EEe-ccceeeeccCCCC
Confidence 11 121 2345566667664
No 92
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.29 E-value=0.00055 Score=64.35 Aligned_cols=213 Identities=13% Similarity=0.056 Sum_probs=105.6
Q ss_pred CCeEEEEeCCCcEEEEeCCCCeEEEEeecC-CCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEE
Q 018242 107 NGDLYIADAYFGLLKVGPEGGLATAVATQS-EGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMK 185 (359)
Q Consensus 107 ~g~l~v~~~~~~i~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~ 185 (359)
++.+++....+.|+.+|.++|+..-..... +.........-++. +|. +|++. ..+.++.
T Consensus 160 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~-~~~-v~~~~------------------~~g~v~a 219 (394)
T PRK11138 160 DGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATA-FGG-AIVGG------------------DNGRVSA 219 (394)
T ss_pred CCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEE-CCE-EEEEc------------------CCCEEEE
Confidence 678888876666999999998864322211 00000000111222 344 77762 2457888
Q ss_pred EeCCCCcEEEEeCCCCCCc---------eEEEcc--CCCEEEEEecCCCEEEEEEcCCCCCcceeEeec-CCCCCCceEE
Q 018242 186 YDPATKQVTVLLGNLSFPN---------GVALSE--DGNYILLAETTSCRILRYWLKTSKAGTIEIVAQ-LPGFPDNIKR 253 (359)
Q Consensus 186 ~d~~~~~~~~~~~~~~~p~---------gia~~~--d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~p~~i~~ 253 (359)
+|+++++....... ..|. .+..+| .++.+|+.. .++.++.+|...++ ..+.. ... +..+..
T Consensus 220 ~d~~~G~~~W~~~~-~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~-~~g~l~ald~~tG~----~~W~~~~~~-~~~~~~ 292 (394)
T PRK11138 220 VLMEQGQLIWQQRI-SQPTGATEIDRLVDVDTTPVVVGGVVYALA-YNGNLVALDLRSGQ----IVWKREYGS-VNDFAV 292 (394)
T ss_pred EEccCChhhheecc-ccCCCccchhcccccCCCcEEECCEEEEEE-cCCeEEEEECCCCC----EEEeecCCC-ccCcEE
Confidence 88887765432110 0110 011111 234588776 45789999976542 22222 222 233444
Q ss_pred CCCCCEEEEEecCCCccccccccC-CccceeeecCCcc------ce-eeeeecccccCcceEEEEECC-CCCEEEEEEcc
Q 018242 254 SPRGGFWVGIHSRRKGISKLVLSF-PWIGNVLIKLPID------IV-KIHSSLVKLSGNGGMAMRISE-QGNVLEILEEI 324 (359)
Q Consensus 254 d~~G~lwv~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~------~~-~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~ 324 (359)
+ +|++|+++..+. +..+ ..+|+.+.+.+.. .. ......+-...+ +.++++|. +|+++..+...
T Consensus 293 ~-~~~vy~~~~~g~------l~ald~~tG~~~W~~~~~~~~~~~sp~v~~g~l~v~~~~-G~l~~ld~~tG~~~~~~~~~ 364 (394)
T PRK11138 293 D-GGRIYLVDQNDR------VYALDTRGGVELWSQSDLLHRLLTAPVLYNGYLVVGDSE-GYLHWINREDGRFVAQQKVD 364 (394)
T ss_pred E-CCEEEEEcCCCe------EEEEECCCCcEEEcccccCCCcccCCEEECCEEEEEeCC-CEEEEEECCCCCEEEEEEcC
Confidence 2 467887765433 3333 3466655433211 00 011111222333 45666774 46666555332
Q ss_pred CCceeeceEEEEEeCCEEEEecCCCCeEEEEcCC
Q 018242 325 GRKMWRSISEVEEKDGNLWIGSVNMPYAGLYNYS 358 (359)
Q Consensus 325 ~g~~~~~~~~~~~~~g~l~ig~~~~~~l~~~~~~ 358 (359)
.+. ..+.....+++||+++. +..|..++++
T Consensus 365 ~~~---~~s~P~~~~~~l~v~t~-~G~l~~~~~~ 394 (394)
T PRK11138 365 SSG---FLSEPVVADDKLLIQAR-DGTVYAITRP 394 (394)
T ss_pred CCc---ceeCCEEECCEEEEEeC-CceEEEEeCC
Confidence 111 11222335889999986 6678777653
No 93
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.29 E-value=0.00024 Score=65.04 Aligned_cols=177 Identities=15% Similarity=0.178 Sum_probs=97.0
Q ss_pred ccCCCeeEEecCCCEEEEEEcCCcceEEEeec-CCCCCCCCCCcccccccccccCCcceE-EE-EecCCCeEEEEeCCCc
Q 018242 42 DALGEGPYTGVSDGRIIKWHQDQRRWLHFART-SPNRDGCEGAYEYDHAAKEHICGRPLG-LC-FNKTNGDLYIADAYFG 118 (359)
Q Consensus 42 ~~~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~p~g-i~-~~~~~g~l~v~~~~~~ 118 (359)
..||+++..... |-|+.+||.+.+.+.+.+. +..+. +.++ .+ ..|.. +. +...+|++++....+.
T Consensus 275 nsDGkrIvFq~~-GdIylydP~td~lekldI~lpl~rk----~k~~---k~----~~pskyledfa~~~Gd~ia~VSRGk 342 (668)
T COG4946 275 NSDGKRIVFQNA-GDIYLYDPETDSLEKLDIGLPLDRK----KKQP---KF----VNPSKYLEDFAVVNGDYIALVSRGK 342 (668)
T ss_pred CCCCcEEEEecC-CcEEEeCCCcCcceeeecCCccccc----cccc---cc----cCHHHhhhhhccCCCcEEEEEecCc
Confidence 456775555444 7899999999877776543 11111 0000 01 11110 00 2222455444433444
Q ss_pred EEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCc-eEEEEeCCCCcEEEEe
Q 018242 119 LLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTG-RLMKYDPATKQVTVLL 197 (359)
Q Consensus 119 i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g-~v~~~d~~~~~~~~~~ 197 (359)
...+++..+.+.++.... . ..-..+..++++ +.+++. .| .+..+|.++++++.+.
T Consensus 343 aFi~~~~~~~~iqv~~~~---~-VrY~r~~~~~e~--~vigt~------------------dgD~l~iyd~~~~e~kr~e 398 (668)
T COG4946 343 AFIMRPWDGYSIQVGKKG---G-VRYRRIQVDPEG--DVIGTN------------------DGDKLGIYDKDGGEVKRIE 398 (668)
T ss_pred EEEECCCCCeeEEcCCCC---c-eEEEEEccCCcc--eEEecc------------------CCceEEEEecCCceEEEee
Confidence 555555555433322110 0 011234455553 555532 22 5778888889988888
Q ss_pred CCCCCCceEEEccCCCEEEEEecCCCEEEEEEcCCCCCcceeEeec-CCCCCCceEECCCCC
Q 018242 198 GNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQ-LPGFPDNIKRSPRGG 258 (359)
Q Consensus 198 ~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~p~~i~~d~~G~ 258 (359)
.++.....+..++||+.+.+++ ....|+++|++.++. +.... ..++.-++.+.++++
T Consensus 399 ~~lg~I~av~vs~dGK~~vvaN-dr~el~vididngnv---~~idkS~~~lItdf~~~~nsr 456 (668)
T COG4946 399 KDLGNIEAVKVSPDGKKVVVAN-DRFELWVIDIDNGNV---RLIDKSEYGLITDFDWHPNSR 456 (668)
T ss_pred CCccceEEEEEcCCCcEEEEEc-CceEEEEEEecCCCe---eEecccccceeEEEEEcCCce
Confidence 8888888999999999766665 667899999876532 22211 223444556656554
No 94
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.29 E-value=0.00057 Score=57.22 Aligned_cols=197 Identities=9% Similarity=0.075 Sum_probs=120.4
Q ss_pred ceEEEccCCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEEeCC
Q 018242 37 ESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIADAY 116 (359)
Q Consensus 37 ~~i~~~~~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~~~~ 116 (359)
..+.+.-||+...++-.+..|..|||..+.... .....+.+....+...++..+--+...
T Consensus 21 ~avryN~dGnY~ltcGsdrtvrLWNp~rg~lik--------------------tYsghG~EVlD~~~s~Dnskf~s~GgD 80 (307)
T KOG0316|consen 21 RAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIK--------------------TYSGHGHEVLDAALSSDNSKFASCGGD 80 (307)
T ss_pred EEEEEccCCCEEEEcCCCceEEeecccccceee--------------------eecCCCceeeeccccccccccccCCCC
Confidence 366788899955566667889999998774322 112233444555555533333333323
Q ss_pred CcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCCcEEEE
Q 018242 117 FGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQVTVL 196 (359)
Q Consensus 117 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~ 196 (359)
..++.+|..+|++.+.. .+ ....+|.+.+..+.. +.++ ++....+-.||=.+..++++
T Consensus 81 k~v~vwDV~TGkv~Rr~---rg-H~aqVNtV~fNeesS-Vv~S-----------------gsfD~s~r~wDCRS~s~ePi 138 (307)
T KOG0316|consen 81 KAVQVWDVNTGKVDRRF---RG-HLAQVNTVRFNEESS-VVAS-----------------GSFDSSVRLWDCRSRSFEPI 138 (307)
T ss_pred ceEEEEEcccCeeeeec---cc-ccceeeEEEecCcce-EEEe-----------------ccccceeEEEEcccCCCCcc
Confidence 35999999999864322 11 224678899988887 6666 23455788888776666654
Q ss_pred e---CCCCCCceEEEccCCCEEEEEecCCCEEEEEEcCCCCCcceeEeec-CCCCCCceEECCCCC-EEEEEecCCCccc
Q 018242 197 L---GNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQ-LPGFPDNIKRSPRGG-FWVGIHSRRKGIS 271 (359)
Q Consensus 197 ~---~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~p~~i~~d~~G~-lwv~~~~~~~~~~ 271 (359)
+ ........|.+. + +.+++.+.++++.+||+..++. ..+ ++.....+.+.++|+ ..++..++.
T Consensus 139 Qildea~D~V~Si~v~--~-heIvaGS~DGtvRtydiR~G~l-----~sDy~g~pit~vs~s~d~nc~La~~l~st---- 206 (307)
T KOG0316|consen 139 QILDEAKDGVSSIDVA--E-HEIVAGSVDGTVRTYDIRKGTL-----SSDYFGHPITSVSFSKDGNCSLASSLDST---- 206 (307)
T ss_pred chhhhhcCceeEEEec--c-cEEEeeccCCcEEEEEeeccee-----ehhhcCCcceeEEecCCCCEEEEeeccce----
Confidence 3 112233344443 3 3789999999999999865422 222 222236689999998 455554432
Q ss_pred cccccCC-ccceeeecCCc
Q 018242 272 KLVLSFP-WIGNVLIKLPI 289 (359)
Q Consensus 272 ~~~~~~~-~~g~~~~~~~~ 289 (359)
+...+ .+|++++....
T Consensus 207 --lrLlDk~tGklL~sYkG 223 (307)
T KOG0316|consen 207 --LRLLDKETGKLLKSYKG 223 (307)
T ss_pred --eeecccchhHHHHHhcc
Confidence 55555 47888876544
No 95
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=98.26 E-value=0.00024 Score=63.90 Aligned_cols=189 Identities=13% Similarity=0.013 Sum_probs=116.2
Q ss_pred CCCceEEEccCCCeeEEecCCCEEEEEE--cCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEE
Q 018242 34 IGPESLAFDALGEGPYTGVSDGRIIKWH--QDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLY 111 (359)
Q Consensus 34 ~~p~~i~~~~~G~~l~~~~~~~~i~~~d--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~ 111 (359)
..-+-+.++++|+.|..++.+.....|. .+.. ++... ...........|.++|++..|.
T Consensus 225 dEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~-~kl~~------------------tlvgh~~~V~yi~wSPDdryLl 285 (519)
T KOG0293|consen 225 DEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVH-FKLKK------------------TLVGHSQPVSYIMWSPDDRYLL 285 (519)
T ss_pred CcEEEEEEcCCCeeEeeccCCceEEEEEEecCcc-eeeee------------------eeecccCceEEEEECCCCCeEE
Confidence 4556788999999677777776555554 3332 22211 2222223356788999777777
Q ss_pred EEeCCCcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCC
Q 018242 112 IADAYFGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATK 191 (359)
Q Consensus 112 v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~ 191 (359)
.+.....+.++|..+|...+..... ....+...++-|||. =+|+ ++....++.+|.+++
T Consensus 286 aCg~~e~~~lwDv~tgd~~~~y~~~---~~~S~~sc~W~pDg~-~~V~-----------------Gs~dr~i~~wdlDgn 344 (519)
T KOG0293|consen 286 ACGFDEVLSLWDVDTGDLRHLYPSG---LGFSVSSCAWCPDGF-RFVT-----------------GSPDRTIIMWDLDGN 344 (519)
T ss_pred ecCchHheeeccCCcchhhhhcccC---cCCCcceeEEccCCc-eeEe-----------------cCCCCcEEEecCCcc
Confidence 7654445888899998866544322 123567789999998 4555 234567999998854
Q ss_pred cEEEEeCCCC--CCceEEEccCCCEEEEEecCCCEEEEEEcCCCCCcceeEeecCCCCCCceEECCCCCEEEEEecCC
Q 018242 192 QVTVLLGNLS--FPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGGFWVGIHSRR 267 (359)
Q Consensus 192 ~~~~~~~~~~--~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lwv~~~~~~ 267 (359)
... -..+.. ....+++++||++++... .+..|..|+.... ..+... ........+.++.+|++...+....
T Consensus 345 ~~~-~W~gvr~~~v~dlait~Dgk~vl~v~-~d~~i~l~~~e~~--~dr~li-se~~~its~~iS~d~k~~LvnL~~q 417 (519)
T KOG0293|consen 345 ILG-NWEGVRDPKVHDLAITYDGKYVLLVT-VDKKIRLYNREAR--VDRGLI-SEEQPITSFSISKDGKLALVNLQDQ 417 (519)
T ss_pred hhh-cccccccceeEEEEEcCCCcEEEEEe-cccceeeechhhh--hhhccc-cccCceeEEEEcCCCcEEEEEcccC
Confidence 322 222322 346899999999888776 4457777775321 111111 1122245678888998777666544
No 96
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=98.23 E-value=0.00059 Score=60.90 Aligned_cols=152 Identities=15% Similarity=0.197 Sum_probs=96.5
Q ss_pred eEEEccCCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEE-eCC
Q 018242 38 SLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIA-DAY 116 (359)
Q Consensus 38 ~i~~~~~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~-~~~ 116 (359)
++.|.|+|..+..+..+..+..||+++..-.. ......+=...++++| ||...++ ...
T Consensus 120 ~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~--------------------t~KgH~~WVlcvawsP-Dgk~iASG~~d 178 (480)
T KOG0271|consen 120 SVQFSPTGSRLVTGSGDTTVRLWDLDTETPLF--------------------TCKGHKNWVLCVAWSP-DGKKIASGSKD 178 (480)
T ss_pred EEEecCCCceEEecCCCceEEeeccCCCCcce--------------------eecCCccEEEEEEECC-CcchhhccccC
Confidence 78899999989999999999999999862110 1222223356788999 6665444 444
Q ss_pred CcEEEEeCCCCeEEEEeecCCCccccccceEEEe-----CCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCC
Q 018242 117 FGLLKVGPEGGLATAVATQSEGIPFRFCNSLDID-----QSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATK 191 (359)
Q Consensus 117 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d-----~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~ 191 (359)
+.|..+|+++|+- +.....+ ....+.+|++. |..+ ...+ .+..|.+..+|...+
T Consensus 179 g~I~lwdpktg~~--~g~~l~g-H~K~It~Lawep~hl~p~~r-~las-----------------~skDg~vrIWd~~~~ 237 (480)
T KOG0271|consen 179 GSIRLWDPKTGQQ--IGRALRG-HKKWITALAWEPLHLVPPCR-RLAS-----------------SSKDGSVRIWDTKLG 237 (480)
T ss_pred CeEEEecCCCCCc--ccccccC-cccceeEEeecccccCCCcc-ceec-----------------ccCCCCEEEEEccCc
Confidence 5699999998863 2222222 11245566655 4444 3333 345778999998766
Q ss_pred cEEEEe-CCCCCCceEEEccCCCEEEEEecCCCEEEEEEcCCC
Q 018242 192 QVTVLL-GNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTS 233 (359)
Q Consensus 192 ~~~~~~-~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~ 233 (359)
...... .+.....-+.+.-+| ++.+.+.+.+|..|+...+
T Consensus 238 ~~~~~lsgHT~~VTCvrwGG~g--liySgS~DrtIkvw~a~dG 278 (480)
T KOG0271|consen 238 TCVRTLSGHTASVTCVRWGGEG--LIYSGSQDRTIKVWRALDG 278 (480)
T ss_pred eEEEEeccCccceEEEEEcCCc--eEEecCCCceEEEEEccch
Confidence 655443 333334455554444 7777888899999987553
No 97
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.23 E-value=0.00013 Score=70.26 Aligned_cols=157 Identities=10% Similarity=0.002 Sum_probs=96.6
Q ss_pred EEEEeeCCCCCCceEEEccCCCeeEEecCC----CEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceE
Q 018242 25 VVQYQIEGAIGPESLAFDALGEGPYTGVSD----GRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLG 100 (359)
Q Consensus 25 ~~~~~~~~~~~p~~i~~~~~G~~l~~~~~~----~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g 100 (359)
...+.+++ .|+.+.++++|+.+|+++.+ ..+...+.....+..+- .+.. .
T Consensus 228 ~~qV~Vdg--npd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvf------------------ni~~------i 281 (635)
T PRK02888 228 AWQVMVDG--NLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVF------------------NIAR------I 281 (635)
T ss_pred EEEEEeCC--CcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEE------------------chHH------H
Confidence 34677775 99999999999989988743 23333333222111100 0000 0
Q ss_pred EEEecCCCeEEEEeCCCcEEEEeCCC-----CeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeee
Q 018242 101 LCFNKTNGDLYIADAYFGLLKVGPEG-----GLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVIL 175 (359)
Q Consensus 101 i~~~~~~g~l~v~~~~~~i~~~~~~~-----~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~ 175 (359)
-.+.+++...|+. .+.+..+|..+ .++..+... ...|+++.++|||+++|++.-
T Consensus 282 ea~vkdGK~~~V~--gn~V~VID~~t~~~~~~~v~~yIPV-----GKsPHGV~vSPDGkylyVank-------------- 340 (635)
T PRK02888 282 EEAVKAGKFKTIG--GSKVPVVDGRKAANAGSALTRYVPV-----PKNPHGVNTSPDGKYFIANGK-------------- 340 (635)
T ss_pred HHhhhCCCEEEEC--CCEEEEEECCccccCCcceEEEEEC-----CCCccceEECCCCCEEEEeCC--------------
Confidence 0122324455552 35688888876 334333321 247899999999999999842
Q ss_pred ecCCCceEEEEeCCCCcE------------EEEeCCCCCCceEEEccCCCEEEEEecCCCEEEEEEcCC
Q 018242 176 SGDKTGRLMKYDPATKQV------------TVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKT 232 (359)
Q Consensus 176 ~~~~~g~v~~~d~~~~~~------------~~~~~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~ 232 (359)
....|-.+|.++.+. ..-..-...|-..+|+.+|+ .|.+...+++|.+|+++.
T Consensus 341 ---lS~tVSVIDv~k~k~~~~~~~~~~~~vvaevevGlGPLHTaFDg~G~-aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 341 ---LSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPELGLGPLHTAFDGRGN-AYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred ---CCCcEEEEEChhhhhhhhccCCccceEEEeeccCCCcceEEECCCCC-EEEeEeecceeEEEehHH
Confidence 234566677654221 11112256788999999987 899999999999999864
No 98
>KOG1520 consensus Predicted alkaloid synthase/Surface mucin Hemomucin [General function prediction only]
Probab=98.23 E-value=1.4e-05 Score=71.82 Aligned_cols=142 Identities=18% Similarity=0.272 Sum_probs=95.0
Q ss_pred CCCceEEEccCCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCc----ceEEEEecCCCe
Q 018242 34 IGPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGR----PLGLCFNKTNGD 109 (359)
Q Consensus 34 ~~p~~i~~~~~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----p~gi~~~~~~g~ 109 (359)
-+|-||+++..|.-+|++...-+++..++.++..+.... ...+. ..++.+++ +|.
T Consensus 115 GRPLGl~f~~~ggdL~VaDAYlGL~~V~p~g~~a~~l~~--------------------~~~G~~~kf~N~ldI~~-~g~ 173 (376)
T KOG1520|consen 115 GRPLGIRFDKKGGDLYVADAYLGLLKVGPEGGLAELLAD--------------------EAEGKPFKFLNDLDIDP-EGV 173 (376)
T ss_pred CCcceEEeccCCCeEEEEecceeeEEECCCCCcceeccc--------------------cccCeeeeecCceeEcC-CCe
Confidence 489999999988338887777889999999874333221 11122 23566777 778
Q ss_pred EEEEeC------------------CCcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccce
Q 018242 110 LYIADA------------------YFGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHI 171 (359)
Q Consensus 110 l~v~~~------------------~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~ 171 (359)
+|.++. .+++++||+.++..+.+.+ ...++|+++.++|+.++.+++..
T Consensus 174 vyFTDSSsk~~~rd~~~a~l~g~~~GRl~~YD~~tK~~~VLld-----~L~F~NGlaLS~d~sfvl~~Et~--------- 239 (376)
T KOG1520|consen 174 VYFTDSSSKYDRRDFVFAALEGDPTGRLFRYDPSTKVTKVLLD-----GLYFPNGLALSPDGSFVLVAETT--------- 239 (376)
T ss_pred EEEeccccccchhheEEeeecCCCccceEEecCcccchhhhhh-----cccccccccCCCCCCEEEEEeec---------
Confidence 877753 1247788887776655544 35689999999999988888543
Q ss_pred eeeeecCCCceEEEEeCCCCcE---EEEeCCCC-CCceEEEccCCCEEEEEe
Q 018242 172 SVILSGDKTGRLMKYDPATKQV---TVLLGNLS-FPNGVALSEDGNYILLAE 219 (359)
Q Consensus 172 ~~~~~~~~~g~v~~~d~~~~~~---~~~~~~~~-~p~gia~~~d~~~l~v~~ 219 (359)
...+.+|-.++.+. +.+..+++ .|.-|..+++|+ .||+.
T Consensus 240 --------~~ri~rywi~g~k~gt~EvFa~~LPG~PDNIR~~~~G~-fWVal 282 (376)
T KOG1520|consen 240 --------TARIKRYWIKGPKAGTSEVFAEGLPGYPDNIRRDSTGH-FWVAL 282 (376)
T ss_pred --------cceeeeeEecCCccCchhhHhhcCCCCCcceeECCCCC-EEEEE
Confidence 23566655544333 55555443 588898888887 45554
No 99
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.23 E-value=0.0045 Score=58.52 Aligned_cols=137 Identities=18% Similarity=0.159 Sum_probs=82.5
Q ss_pred EEEEecCCCe-EEEEeCC---CcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeee
Q 018242 100 GLCFNKTNGD-LYIADAY---FGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVIL 175 (359)
Q Consensus 100 gi~~~~~~g~-l~v~~~~---~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~ 175 (359)
...++|++++ ++++... ..|+++|..+++.+.+.. ..+ ......++|||+++.++...
T Consensus 192 ~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-~~g----~~~~~~~SPDG~~la~~~~~------------- 253 (419)
T PRK04043 192 FPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS-SQG----MLVVSDVSKDGSKLLLTMAP------------- 253 (419)
T ss_pred eEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec-CCC----cEEeeEECCCCCEEEEEEcc-------------
Confidence 4567885444 6655433 249999999998766543 111 11234689999877776322
Q ss_pred ecCCCceEEEEeCCCCcEEEEeCCCCCCceEEEccCCCEEEEEecCC--CEEEEEEcCCCCCcceeEeecCCCCCCceEE
Q 018242 176 SGDKTGRLMKYDPATKQVTVLLGNLSFPNGVALSEDGNYILLAETTS--CRILRYWLKTSKAGTIEIVAQLPGFPDNIKR 253 (359)
Q Consensus 176 ~~~~~g~v~~~d~~~~~~~~~~~~~~~p~gia~~~d~~~l~v~~~~~--~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~ 253 (359)
.....||.++.+++..+.+...........++|||+.++++.... ..|++++++++.. +.+... +. .+..+
T Consensus 254 --~g~~~Iy~~dl~~g~~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~---~rlt~~-g~-~~~~~ 326 (419)
T PRK04043 254 --KGQPDIYLYDTNTKTLTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSV---EQVVFH-GK-NNSSV 326 (419)
T ss_pred --CCCcEEEEEECCCCcEEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCe---EeCccC-CC-cCceE
Confidence 123579999988877665532221123457999999877776443 3788888865432 111111 11 23578
Q ss_pred CCCCCEEE
Q 018242 254 SPRGGFWV 261 (359)
Q Consensus 254 d~~G~lwv 261 (359)
+++|+..+
T Consensus 327 SPDG~~Ia 334 (419)
T PRK04043 327 STYKNYIV 334 (419)
T ss_pred CCCCCEEE
Confidence 89997433
No 100
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=98.19 E-value=0.0019 Score=60.26 Aligned_cols=247 Identities=16% Similarity=0.131 Sum_probs=121.5
Q ss_pred CCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcce-EEEEecCCCeEEEEeCCCcEEEEe
Q 018242 45 GEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPL-GLCFNKTNGDLYIADAYFGLLKVG 123 (359)
Q Consensus 45 G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-gi~~~~~~g~l~v~~~~~~i~~~~ 123 (359)
+..+|++..++.++.+|..+++...-.. . ..... ...+. ++.+++....+.|+.+|
T Consensus 105 ~~~v~v~~~~g~l~ald~~tG~~~W~~~------------------~---~~~~~~~p~v~--~~~v~v~~~~g~l~a~d 161 (377)
T TIGR03300 105 GGLVFVGTEKGEVIALDAEDGKELWRAK------------------L---SSEVLSPPLVA--NGLVVVRTNDGRLTALD 161 (377)
T ss_pred CCEEEEEcCCCEEEEEECCCCcEeeeec------------------c---CceeecCCEEE--CCEEEEECCCCeEEEEE
Confidence 3347788888899999987765433210 0 01111 11122 67888876556699999
Q ss_pred CCCCeEEEEeecCCC-ccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCCcEEEEeCCCCC
Q 018242 124 PEGGLATAVATQSEG-IPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQVTVLLGNLSF 202 (359)
Q Consensus 124 ~~~~~~~~~~~~~~~-~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~ 202 (359)
.++|+.......... .........++. ++. +|++. ..+.++.+|+.+|+...... ...
T Consensus 162 ~~tG~~~W~~~~~~~~~~~~~~~sp~~~-~~~-v~~~~------------------~~g~v~ald~~tG~~~W~~~-~~~ 220 (377)
T TIGR03300 162 AATGERLWTYSRVTPALTLRGSASPVIA-DGG-VLVGF------------------AGGKLVALDLQTGQPLWEQR-VAL 220 (377)
T ss_pred cCCCceeeEEccCCCceeecCCCCCEEE-CCE-EEEEC------------------CCCEEEEEEccCCCEeeeec-ccc
Confidence 988875432211110 000000111222 345 77762 24579999988887654211 000
Q ss_pred C-------------ceEEEccCCCEEEEEecCCCEEEEEEcCCCCCcceeEeec-CCCCCCceEECCCCCEEEEEecCCC
Q 018242 203 P-------------NGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQ-LPGFPDNIKRSPRGGFWVGIHSRRK 268 (359)
Q Consensus 203 p-------------~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~p~~i~~d~~G~lwv~~~~~~~ 268 (359)
+ ....+ .++.+|+.. .++.++.++....+. .+.. ... .....++ +|++|+++..+.
T Consensus 221 ~~g~~~~~~~~~~~~~p~~--~~~~vy~~~-~~g~l~a~d~~tG~~----~W~~~~~~-~~~p~~~-~~~vyv~~~~G~- 290 (377)
T TIGR03300 221 PKGRTELERLVDVDGDPVV--DGGQVYAVS-YQGRVAALDLRSGRV----LWKRDASS-YQGPAVD-DNRLYVTDADGV- 290 (377)
T ss_pred CCCCCchhhhhccCCccEE--ECCEEEEEE-cCCEEEEEECCCCcE----EEeeccCC-ccCceEe-CCEEEEECCCCe-
Confidence 1 01112 234577765 457899999754421 1221 111 2233343 466777764332
Q ss_pred ccccccccCC-ccceeeecC-Ccccee------eeeecccccCcceEEEEECCC-CCEEEEEEccCCceeeceEEEEEeC
Q 018242 269 GISKLVLSFP-WIGNVLIKL-PIDIVK------IHSSLVKLSGNGGMAMRISEQ-GNVLEILEEIGRKMWRSISEVEEKD 339 (359)
Q Consensus 269 ~~~~~~~~~~-~~g~~~~~~-~~~~~~------~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~g~~~~~~~~~~~~~ 339 (359)
+..++ .+|+.+.+. ...... .....+-.... +.+++++.+ |+++..+....+. ........+
T Consensus 291 -----l~~~d~~tG~~~W~~~~~~~~~~ssp~i~g~~l~~~~~~-G~l~~~d~~tG~~~~~~~~~~~~---~~~sp~~~~ 361 (377)
T TIGR03300 291 -----VVALDRRSGSELWKNDELKYRQLTAPAVVGGYLVVGDFE-GYLHWLSREDGSFVARLKTDGSG---IASPPVVVG 361 (377)
T ss_pred -----EEEEECCCCcEEEccccccCCccccCEEECCEEEEEeCC-CEEEEEECCCCCEEEEEEcCCCc---cccCCEEEC
Confidence 44444 366665443 111111 11111112233 456667653 6666555432211 111223347
Q ss_pred CEEEEecCCCCeEEEE
Q 018242 340 GNLWIGSVNMPYAGLY 355 (359)
Q Consensus 340 g~l~ig~~~~~~l~~~ 355 (359)
++||+++. +..|..+
T Consensus 362 ~~l~v~~~-dG~l~~~ 376 (377)
T TIGR03300 362 DGLLVQTR-DGDLYAF 376 (377)
T ss_pred CEEEEEeC-CceEEEe
Confidence 79999997 5556554
No 101
>PTZ00420 coronin; Provisional
Probab=98.16 E-value=0.0016 Score=63.38 Aligned_cols=195 Identities=12% Similarity=0.040 Sum_probs=108.7
Q ss_pred CCceEEEccC-CCeeEEecCCCEEEEEEcCCcce--EEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEE
Q 018242 35 GPESLAFDAL-GEGPYTGVSDGRIIKWHQDQRRW--LHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLY 111 (359)
Q Consensus 35 ~p~~i~~~~~-G~~l~~~~~~~~i~~~d~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~ 111 (359)
...+++++|+ +.+++++..++.|..||..++.. ..+. .| +..+.........++++|....++
T Consensus 76 ~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~----------~p----~~~L~gH~~~V~sVaf~P~g~~iL 141 (568)
T PTZ00420 76 SILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIK----------DP----QCILKGHKKKISIIDWNPMNYYIM 141 (568)
T ss_pred CEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccc----------cc----eEEeecCCCcEEEEEECCCCCeEE
Confidence 4458899986 77788889999999999865311 1000 00 001122234467889999444555
Q ss_pred EE-eCCCcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCC
Q 018242 112 IA-DAYFGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPAT 190 (359)
Q Consensus 112 v~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~ 190 (359)
++ ...+.|..+|..+++...... . ...+..+.++++|+ ++++. ...+.|..||+.+
T Consensus 142 aSgS~DgtIrIWDl~tg~~~~~i~-~----~~~V~SlswspdG~-lLat~-----------------s~D~~IrIwD~Rs 198 (568)
T PTZ00420 142 CSSGFDSFVNIWDIENEKRAFQIN-M----PKKLSSLKWNIKGN-LLSGT-----------------CVGKHMHIIDPRK 198 (568)
T ss_pred EEEeCCCeEEEEECCCCcEEEEEe-c----CCcEEEEEECCCCC-EEEEE-----------------ecCCEEEEEECCC
Confidence 44 334458889998776432211 1 12467899999999 66652 2245788999987
Q ss_pred CcEEE-EeCCCCCCc--eE---EEccCCCEEEEEecCC---CEEEEEEcCCCCCcceeEeecCCCCCCce--EECC-CCC
Q 018242 191 KQVTV-LLGNLSFPN--GV---ALSEDGNYILLAETTS---CRILRYWLKTSKAGTIEIVAQLPGFPDNI--KRSP-RGG 258 (359)
Q Consensus 191 ~~~~~-~~~~~~~p~--gi---a~~~d~~~l~v~~~~~---~~i~~~~~~~~~~~~~~~~~~~~~~p~~i--~~d~-~G~ 258 (359)
++... +..+..... .+ .++++++.+..+.... ..|..||+..... ....+ .+...+..+ ..|+ +|.
T Consensus 199 g~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~-pl~~~-~ld~~~~~L~p~~D~~tg~ 276 (568)
T PTZ00420 199 QEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTS-ALVTM-SIDNASAPLIPHYDESTGL 276 (568)
T ss_pred CcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCC-ceEEE-EecCCccceEEeeeCCCCC
Confidence 75543 221111111 11 2346777666655443 3799999864211 11111 121212222 3344 477
Q ss_pred EEEEEecCCC
Q 018242 259 FWVGIHSRRK 268 (359)
Q Consensus 259 lwv~~~~~~~ 268 (359)
++++..+.+.
T Consensus 277 l~lsGkGD~t 286 (568)
T PTZ00420 277 IYLIGKGDGN 286 (568)
T ss_pred EEEEEECCCe
Confidence 8876656554
No 102
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=98.16 E-value=0.00029 Score=67.02 Aligned_cols=175 Identities=12% Similarity=0.083 Sum_probs=107.2
Q ss_pred CCEEEEeeCCCCCCceEEEccCCCeeEEec-CCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEE
Q 018242 23 QGVVQYQIEGAIGPESLAFDALGEGPYTGV-SDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGL 101 (359)
Q Consensus 23 ~~~~~~~~~~~~~p~~i~~~~~G~~l~~~~-~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi 101 (359)
++++++.+.+.+.-.+-+++|+|.++.+++ .+-+||+++++.. .+..... ...........+
T Consensus 372 ~~Llkl~~k~~~nIs~~aiSPdg~~Ia~st~~~~~iy~L~~~~~-vk~~~v~----------------~~~~~~~~a~~i 434 (691)
T KOG2048|consen 372 IHLLKLFTKEKENISCAAISPDGNLIAISTVSRTKIYRLQPDPN-VKVINVD----------------DVPLALLDASAI 434 (691)
T ss_pred hhheeeecCCccceeeeccCCCCCEEEEeeccceEEEEeccCcc-eeEEEec----------------cchhhhccceee
Confidence 446688887767777888899999665554 4468889888763 2221100 011111123456
Q ss_pred EEecCCCeEEEEe-CCCcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCC
Q 018242 102 CFNKTNGDLYIAD-AYFGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKT 180 (359)
Q Consensus 102 ~~~~~~g~l~v~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~ 180 (359)
.+.-+++.++++. ....+..++.++...+++....+...-..+..|+++++|+++-+. +..
T Consensus 435 ~ftid~~k~~~~s~~~~~le~~el~~ps~kel~~~~~~~~~~~I~~l~~SsdG~yiaa~------------------~t~ 496 (691)
T KOG2048|consen 435 SFTIDKNKLFLVSKNIFSLEEFELETPSFKELKSIQSQAKCPSISRLVVSSDGNYIAAI------------------STR 496 (691)
T ss_pred EEEecCceEEEEecccceeEEEEecCcchhhhhccccccCCCcceeEEEcCCCCEEEEE------------------ecc
Confidence 6666566666665 233577777776655554433222234567889999999944333 235
Q ss_pred ceEEEEeCCCCcEEEEeCCCC-CCceEEEccCCCEEEEEecCCCEEEEEEcCC
Q 018242 181 GRLMKYDPATKQVTVLLGNLS-FPNGVALSEDGNYILLAETTSCRILRYWLKT 232 (359)
Q Consensus 181 g~v~~~d~~~~~~~~~~~~~~-~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~ 232 (359)
|.|+.|+.++++.+.+...+. .....++.|....-++..+.+++++.|++..
T Consensus 497 g~I~v~nl~~~~~~~l~~rln~~vTa~~~~~~~~~~lvvats~nQv~efdi~~ 549 (691)
T KOG2048|consen 497 GQIFVYNLETLESHLLKVRLNIDVTAAAFSPFVRNRLVVATSNNQVFEFDIEA 549 (691)
T ss_pred ceEEEEEcccceeecchhccCcceeeeeccccccCcEEEEecCCeEEEEecch
Confidence 689999999887776543332 3356667754443445556778999999853
No 103
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.16 E-value=0.00034 Score=60.71 Aligned_cols=178 Identities=13% Similarity=0.195 Sum_probs=101.3
Q ss_pred CCCEEEEeeCCCCCCceEEEccCCCeeEEecCCCEEEEEE--cCCcceEEEeecCCCCCCCCCCcccccccccccCCcce
Q 018242 22 TQGVVQYQIEGAIGPESLAFDALGEGPYTGVSDGRIIKWH--QDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPL 99 (359)
Q Consensus 22 ~~~~~~~~~~~~~~p~~i~~~~~G~~l~~~~~~~~i~~~d--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 99 (359)
++.+.++++.++..||+|+...+|....++-.+..++.+. +++. +..+... +.+. + .........-
T Consensus 117 GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t~-~~~~~~~-~i~L------~----~~~k~N~GfE 184 (316)
T COG3204 117 GDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDADTT-VISAKVQ-KIPL------G----TTNKKNKGFE 184 (316)
T ss_pred CceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCCcc-EEeccce-EEec------c----ccCCCCcCce
Confidence 6667799999999999999999998555666667777554 4432 2222100 0000 0 0001111245
Q ss_pred EEEEecCCCeEEEEeCCC--cEEEEeCCCCeEE-EEeecCC---CccccccceEEEeCCCCEEEEEeCCCccccccceee
Q 018242 100 GLCFNKTNGDLYIADAYF--GLLKVGPEGGLAT-AVATQSE---GIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISV 173 (359)
Q Consensus 100 gi~~~~~~g~l~v~~~~~--~i~~~~~~~~~~~-~~~~~~~---~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~ 173 (359)
|++++++++.+|++-..+ +|+.++....... +...... ..-...++++.+++..++++|-...
T Consensus 185 GlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~~~~~~~LLVLS~E----------- 253 (316)
T COG3204 185 GLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEFNAITNSLLVLSDE----------- 253 (316)
T ss_pred eeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeeccccceecCCCCcEEEEecC-----------
Confidence 899999999999996655 4666553221111 1111000 1112355677787654446665222
Q ss_pred eeecCCCceEEEEeCCCCcEEEE---------eCCCCCCceEEEccCCCEEEEEecCCCEEEEEEc
Q 018242 174 ILSGDKTGRLMKYDPATKQVTVL---------LGNLSFPNGVALSEDGNYILLAETTSCRILRYWL 230 (359)
Q Consensus 174 ~~~~~~~g~v~~~d~~~~~~~~~---------~~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~ 230 (359)
...|..+|.++.-...+ ....+.++||+++.+|. ||+... .+..++|..
T Consensus 254 ------Sr~l~Evd~~G~~~~~lsL~~g~~gL~~dipqaEGiamDd~g~-lYIvSE-Pnlfy~F~~ 311 (316)
T COG3204 254 ------SRRLLEVDLSGEVIELLSLTKGNHGLSSDIPQAEGIAMDDDGN-LYIVSE-PNLFYRFTP 311 (316)
T ss_pred ------CceEEEEecCCCeeeeEEeccCCCCCcccCCCcceeEECCCCC-EEEEec-CCcceeccc
Confidence 23466666654322221 12346789999998887 777754 456777754
No 104
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=98.14 E-value=0.0012 Score=56.07 Aligned_cols=204 Identities=11% Similarity=0.092 Sum_probs=121.5
Q ss_pred CCceEEEccCC-CeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEE
Q 018242 35 GPESLAFDALG-EGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIA 113 (359)
Q Consensus 35 ~p~~i~~~~~G-~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~ 113 (359)
.-+.+++++.. .++.++..+..|.+||...++-.. ..... ++-.-+..+|+++.+.++
T Consensus 66 svdql~w~~~~~d~~atas~dk~ir~wd~r~~k~~~--------------------~i~~~-~eni~i~wsp~g~~~~~~ 124 (313)
T KOG1407|consen 66 SVDQLCWDPKHPDLFATASGDKTIRIWDIRSGKCTA--------------------RIETK-GENINITWSPDGEYIAVG 124 (313)
T ss_pred chhhheeCCCCCcceEEecCCceEEEEEeccCcEEE--------------------Eeecc-CcceEEEEcCCCCEEEEe
Confidence 44567788753 446677888899999987763221 11111 223357788866777777
Q ss_pred eCCCcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCC-Cc
Q 018242 114 DAYFGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPAT-KQ 192 (359)
Q Consensus 114 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~-~~ 192 (359)
+..+.|..+|..+.+...-.. -....+.+.+..+++ +|+.+.+ .|+|-...-.. .-
T Consensus 125 ~kdD~it~id~r~~~~~~~~~-----~~~e~ne~~w~~~nd-~Fflt~G-----------------lG~v~ILsypsLkp 181 (313)
T KOG1407|consen 125 NKDDRITFIDARTYKIVNEEQ-----FKFEVNEISWNNSND-LFFLTNG-----------------LGCVEILSYPSLKP 181 (313)
T ss_pred cCcccEEEEEecccceeehhc-----ccceeeeeeecCCCC-EEEEecC-----------------CceEEEEecccccc
Confidence 766778888877654322111 123567888887777 7777443 34443332111 11
Q ss_pred EEEEeCCCCCCceEEEccCCCEEEEEecCCCEEEEEEcCCCCCcceeEeecCCCCCCceEECCCCCEEEEEecCCCcccc
Q 018242 193 VTVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGGFWVGIHSRRKGISK 272 (359)
Q Consensus 193 ~~~~~~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lwv~~~~~~~~~~~ 272 (359)
+..+..+...---|.|+|+|++ +.+++.+..+-.||++. +-..+.+..+.-..+-+.++-+|++.........
T Consensus 182 v~si~AH~snCicI~f~p~Gry-fA~GsADAlvSLWD~~E--LiC~R~isRldwpVRTlSFS~dg~~lASaSEDh~---- 254 (313)
T KOG1407|consen 182 VQSIKAHPSNCICIEFDPDGRY-FATGSADALVSLWDVDE--LICERCISRLDWPVRTLSFSHDGRMLASASEDHF---- 254 (313)
T ss_pred ccccccCCcceEEEEECCCCce-EeeccccceeeccChhH--hhhheeeccccCceEEEEeccCcceeeccCccce----
Confidence 2222222233346889999985 55566677788888643 3334444443332466888889988886666543
Q ss_pred cccc-CCccceeeecCCcc
Q 018242 273 LVLS-FPWIGNVLIKLPID 290 (359)
Q Consensus 273 ~~~~-~~~~g~~~~~~~~~ 290 (359)
+.+ +.++|..+..++..
T Consensus 255 -IDIA~vetGd~~~eI~~~ 272 (313)
T KOG1407|consen 255 -IDIAEVETGDRVWEIPCE 272 (313)
T ss_pred -EEeEecccCCeEEEeecc
Confidence 222 45788888777664
No 105
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=98.14 E-value=0.00023 Score=64.07 Aligned_cols=181 Identities=17% Similarity=0.167 Sum_probs=114.0
Q ss_pred CCceEEEccC--CCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEE
Q 018242 35 GPESLAFDAL--GEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYI 112 (359)
Q Consensus 35 ~p~~i~~~~~--G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v 112 (359)
.--++.|.|. +.-+.++..+|.+..|+.++.. ++..++....+...++|.| +|+...
T Consensus 219 ~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~--------------------~l~~l~gH~~RVs~VafHP-sG~~L~ 277 (459)
T KOG0272|consen 219 RVGAAVFHPVDSDLNLATASADGTVKLWKLSQET--------------------PLQDLEGHLARVSRVAFHP-SGKFLG 277 (459)
T ss_pred ceeeEEEccCCCccceeeeccCCceeeeccCCCc--------------------chhhhhcchhhheeeeecC-CCceee
Confidence 4456777775 4447888888999999887641 1113444445667889999 777666
Q ss_pred EeCCCc-EEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCC
Q 018242 113 ADAYFG-LLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATK 191 (359)
Q Consensus 113 ~~~~~~-i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~ 191 (359)
+...+. =..+|..++..- +.... ....+.++++.+||. |..+- +.+.--..||..++
T Consensus 278 TasfD~tWRlWD~~tk~El-L~QEG---Hs~~v~~iaf~~DGS-L~~tG-----------------GlD~~~RvWDlRtg 335 (459)
T KOG0272|consen 278 TASFDSTWRLWDLETKSEL-LLQEG---HSKGVFSIAFQPDGS-LAATG-----------------GLDSLGRVWDLRTG 335 (459)
T ss_pred ecccccchhhcccccchhh-Hhhcc---cccccceeEecCCCc-eeecc-----------------CccchhheeecccC
Confidence 544443 334577765422 11111 123678899999999 76651 11211223677777
Q ss_pred cEEEEe-CCCCCCceEEEccCCCEEEEEecCCCEEEEEEcCCCCCcceeEeecCC---CCCCceEECC-CCCEEEEEe
Q 018242 192 QVTVLL-GNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLP---GFPDNIKRSP-RGGFWVGIH 264 (359)
Q Consensus 192 ~~~~~~-~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~---~~p~~i~~d~-~G~lwv~~~ 264 (359)
....+. .+.....+++|+|.|. .+.+.+.+++..+||+..... +...| .....+.+++ .|+..++..
T Consensus 336 r~im~L~gH~k~I~~V~fsPNGy-~lATgs~Dnt~kVWDLR~r~~-----ly~ipAH~nlVS~Vk~~p~~g~fL~Tas 407 (459)
T KOG0272|consen 336 RCIMFLAGHIKEILSVAFSPNGY-HLATGSSDNTCKVWDLRMRSE-----LYTIPAHSNLVSQVKYSPQEGYFLVTAS 407 (459)
T ss_pred cEEEEecccccceeeEeECCCce-EEeecCCCCcEEEeeeccccc-----ceecccccchhhheEecccCCeEEEEcc
Confidence 776654 4566678999999985 788888899999999854311 22222 3456688887 566555443
No 106
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=98.13 E-value=0.00041 Score=65.31 Aligned_cols=164 Identities=17% Similarity=0.244 Sum_probs=93.6
Q ss_pred ccCCcceEEEEecCCCeEEEEeC-CCcEEEEeCCCCeEEEEeec---CCCccccccceEEEeCCC------CEEEEEeCC
Q 018242 93 HICGRPLGLCFNKTNGDLYIADA-YFGLLKVGPEGGLATAVATQ---SEGIPFRFCNSLDIDQST------GIIYFTDSS 162 (359)
Q Consensus 93 ~~~~~p~gi~~~~~~g~l~v~~~-~~~i~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~~d~~g------~~l~v~d~~ 162 (359)
.....|.+|++.+ ++++||+.. .+.|.+++..++..+.+... ........+.+|+++|+= ++||++-+.
T Consensus 27 ~GL~~Pw~maflP-DG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~lYvsyt~ 105 (454)
T TIGR03606 27 SGLNKPWALLWGP-DNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDFMQEKGNPYVYISYTY 105 (454)
T ss_pred CCCCCceEEEEcC-CCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCccccCCCcEEEEEEec
Confidence 3456799999999 899999987 36788998776554333221 111124567889998662 458998322
Q ss_pred CccccccceeeeeecCCCceEEEEeCC--CCc---EEEEeCCC-----CCCceEEEccCCCEEEEEecCC----------
Q 018242 163 SQFQRRNHISVILSGDKTGRLMKYDPA--TKQ---VTVLLGNL-----SFPNGVALSEDGNYILLAETTS---------- 222 (359)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~g~v~~~d~~--~~~---~~~~~~~~-----~~p~gia~~~d~~~l~v~~~~~---------- 222 (359)
..-.. .......|.++..+ +.. .+.+.... ..-..|+|+|||+ ||++--+.
T Consensus 106 ~~~~~--------~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~GgrI~FgPDG~-LYVs~GD~g~~~~~n~~~ 176 (454)
T TIGR03606 106 KNGDK--------ELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNGGRLVFGPDGK-IYYTIGEQGRNQGANFFL 176 (454)
T ss_pred cCCCC--------CccCCcEEEEEEecCCCCccccceEEEecCCCCCCcCCceEEECCCCc-EEEEECCCCCCCcccccC
Confidence 10000 00012356665432 111 12222221 2235789999997 88854332
Q ss_pred ----------------------CEEEEEEcCCCCC--------cceeEeec-CCCCCCceEECCCCCEEEEEecCC
Q 018242 223 ----------------------CRILRYWLKTSKA--------GTIEIVAQ-LPGFPDNIKRSPRGGFWVGIHSRR 267 (359)
Q Consensus 223 ----------------------~~i~~~~~~~~~~--------~~~~~~~~-~~~~p~~i~~d~~G~lwv~~~~~~ 267 (359)
+.|.|++.++.-. ...+++.- +.. |.++++|++|.||++.++..
T Consensus 177 ~~~aQ~~~~~~~~~~~d~~~~~GkILRin~DGsiP~dNPf~~g~~~eIyA~G~RN-p~Gla~dp~G~Lw~~e~Gp~ 251 (454)
T TIGR03606 177 PNQAQHTPTQQELNGKDYHAYMGKVLRLNLDGSIPKDNPSINGVVSHIFTYGHRN-PQGLAFTPDGTLYASEQGPN 251 (454)
T ss_pred cchhccccccccccccCcccCceEEEEEcCCCCCCCCCCccCCCcceEEEEeccc-cceeEECCCCCEEEEecCCC
Confidence 2577777653200 01233332 222 77899999999999988743
No 107
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=98.12 E-value=0.00019 Score=60.50 Aligned_cols=185 Identities=10% Similarity=0.063 Sum_probs=109.0
Q ss_pred eEEEccCCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEEeCCC
Q 018242 38 SLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIADAYF 117 (359)
Q Consensus 38 ~i~~~~~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~~~~~ 117 (359)
.++|+.|-+.|.++....-+..+|.+.-+ .|+. ++....+....+.+...+..+.-+...+
T Consensus 105 ~~af~~ds~~lltgg~ekllrvfdln~p~---------------App~----E~~ghtg~Ir~v~wc~eD~~iLSSadd~ 165 (334)
T KOG0278|consen 105 AVAFSQDSNYLLTGGQEKLLRVFDLNRPK---------------APPK----EISGHTGGIRTVLWCHEDKCILSSADDK 165 (334)
T ss_pred eEEecccchhhhccchHHHhhhhhccCCC---------------CCch----hhcCCCCcceeEEEeccCceEEeeccCC
Confidence 56777776656676666666666665431 0111 2222223333444555466666554445
Q ss_pred cEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCCcEEEEe
Q 018242 118 GLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQVTVLL 197 (359)
Q Consensus 118 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~ 197 (359)
.|..+|..+++....... ...+..+-++++|++|-+++ .+.|..+|+++-.+..-.
T Consensus 166 tVRLWD~rTgt~v~sL~~-----~s~VtSlEvs~dG~ilTia~-------------------gssV~Fwdaksf~~lKs~ 221 (334)
T KOG0278|consen 166 TVRLWDHRTGTEVQSLEF-----NSPVTSLEVSQDGRILTIAY-------------------GSSVKFWDAKSFGLLKSY 221 (334)
T ss_pred ceEEEEeccCcEEEEEec-----CCCCcceeeccCCCEEEEec-------------------CceeEEeccccccceeec
Confidence 688889888764432221 13567889999999444442 346888988753221111
Q ss_pred CCCCCCceEEEccCCCEEEEEecCCCEEEEEEcCCCCCcceeEeec-CCCCCCceEECCCCCEEEEEecCCC
Q 018242 198 GNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQ-LPGFPDNIKRSPRGGFWVGIHSRRK 268 (359)
Q Consensus 198 ~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~p~~i~~d~~G~lwv~~~~~~~ 268 (359)
.-....+...+.|+.+ .||+.-.+..+++||...+. ....+.. -.+-...+.+.|+|.+|......+.
T Consensus 222 k~P~nV~SASL~P~k~-~fVaGged~~~~kfDy~Tge--Ei~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGT 290 (334)
T KOG0278|consen 222 KMPCNVESASLHPKKE-FFVAGGEDFKVYKFDYNTGE--EIGSYNKGHFGPVHCVRFSPDGELYASGSEDGT 290 (334)
T ss_pred cCccccccccccCCCc-eEEecCcceEEEEEeccCCc--eeeecccCCCCceEEEEECCCCceeeccCCCce
Confidence 1112235566788774 89999999999999986542 1223322 3343467889999999986665553
No 108
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=98.12 E-value=0.00015 Score=60.73 Aligned_cols=146 Identities=14% Similarity=0.205 Sum_probs=88.0
Q ss_pred CCCceEEEccCCCeeEEecCC----------CEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEE
Q 018242 34 IGPESLAFDALGEGPYTGVSD----------GRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCF 103 (359)
Q Consensus 34 ~~p~~i~~~~~G~~l~~~~~~----------~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~ 103 (359)
++-.+--.||+|+ +|.+++. +.++.|-+... .. .......-+.|+++
T Consensus 109 nR~NDgkvdP~Gr-yy~GtMad~~~~le~~~g~Ly~~~~~h~-v~---------------------~i~~~v~IsNgl~W 165 (310)
T KOG4499|consen 109 NRLNDGKVDPDGR-YYGGTMADFGDDLEPIGGELYSWLAGHQ-VE---------------------LIWNCVGISNGLAW 165 (310)
T ss_pred cccccCccCCCCc-eeeeeeccccccccccccEEEEeccCCC-ce---------------------eeehhccCCccccc
Confidence 4555667889999 7888764 34444443321 11 11222244789999
Q ss_pred ecCCCeEEEEeCCC-cE--EEEeCCCCeEE---EEee--cCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeee
Q 018242 104 NKTNGDLYIADAYF-GL--LKVGPEGGLAT---AVAT--QSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVIL 175 (359)
Q Consensus 104 ~~~~g~l~v~~~~~-~i--~~~~~~~~~~~---~~~~--~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~ 175 (359)
|.+...+|+.+..+ .| +.||..+|.+. .+.+ .........|.++++|.+|+ |||+...
T Consensus 166 d~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~-L~Va~~n------------- 231 (310)
T KOG4499|consen 166 DSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGN-LYVATFN------------- 231 (310)
T ss_pred cccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCc-EEEEEec-------------
Confidence 98667788877654 46 55557776542 1211 11222345789999999999 9999543
Q ss_pred ecCCCceEEEEeCCCCcEEE-EeCCCCCCceEEEc-cCCCEEEEEec
Q 018242 176 SGDKTGRLMKYDPATKQVTV-LLGNLSFPNGVALS-EDGNYILLAET 220 (359)
Q Consensus 176 ~~~~~g~v~~~d~~~~~~~~-~~~~~~~p~gia~~-~d~~~l~v~~~ 220 (359)
.++|+++||.+|+... +.-........||. +.-..+|++..
T Consensus 232 ----g~~V~~~dp~tGK~L~eiklPt~qitsccFgGkn~d~~yvT~a 274 (310)
T KOG4499|consen 232 ----GGTVQKVDPTTGKILLEIKLPTPQITSCCFGGKNLDILYVTTA 274 (310)
T ss_pred ----CcEEEEECCCCCcEEEEEEcCCCceEEEEecCCCccEEEEEeh
Confidence 4689999999987543 22222334556664 22234666643
No 109
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.11 E-value=0.0003 Score=64.45 Aligned_cols=136 Identities=15% Similarity=0.261 Sum_probs=92.1
Q ss_pred eeEEecCCC-EEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEEeCCCcEEEEeCC
Q 018242 47 GPYTGVSDG-RIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIADAYFGLLKVGPE 125 (359)
Q Consensus 47 ~l~~~~~~~-~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~~~~~~i~~~~~~ 125 (359)
-..+++.+| .+..+|.++++.+.+ ....+....+.+++++..+.+++....|..+|.+
T Consensus 373 ~~vigt~dgD~l~iyd~~~~e~kr~---------------------e~~lg~I~av~vs~dGK~~vvaNdr~el~vidid 431 (668)
T COG4946 373 GDVIGTNDGDKLGIYDKDGGEVKRI---------------------EKDLGNIEAVKVSPDGKKVVVANDRFELWVIDID 431 (668)
T ss_pred ceEEeccCCceEEEEecCCceEEEe---------------------eCCccceEEEEEcCCCcEEEEEcCceEEEEEEec
Confidence 367777776 889999998866544 2334555678888833447777766679999999
Q ss_pred CCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCCcEEEEeCCCCCCce
Q 018242 126 GGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQVTVLLGNLSFPNG 205 (359)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~p~g 205 (359)
++.++.+... ....+.+++++|+++ |++ |... ++-.+..|-.+|..+++.-.+.+....-..
T Consensus 432 ngnv~~idkS----~~~lItdf~~~~nsr--~iA-----YafP-------~gy~tq~Iklydm~~~Kiy~vTT~ta~Dfs 493 (668)
T COG4946 432 NGNVRLIDKS----EYGLITDFDWHPNSR--WIA-----YAFP-------EGYYTQSIKLYDMDGGKIYDVTTPTAYDFS 493 (668)
T ss_pred CCCeeEeccc----ccceeEEEEEcCCce--eEE-----EecC-------cceeeeeEEEEecCCCeEEEecCCcccccC
Confidence 9998755321 234677899999998 666 2111 112234577788887766555444445567
Q ss_pred EEEccCCCEEEEEecC
Q 018242 206 VALSEDGNYILLAETT 221 (359)
Q Consensus 206 ia~~~d~~~l~v~~~~ 221 (359)
-||+||+++||.....
T Consensus 494 PaFD~d~ryLYfLs~R 509 (668)
T COG4946 494 PAFDPDGRYLYFLSAR 509 (668)
T ss_pred cccCCCCcEEEEEecc
Confidence 7899999999987643
No 110
>PLN00181 protein SPA1-RELATED; Provisional
Probab=98.08 E-value=0.0064 Score=62.63 Aligned_cols=186 Identities=9% Similarity=0.107 Sum_probs=107.9
Q ss_pred ceEEEcc-CCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEEeC
Q 018242 37 ESLAFDA-LGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIADA 115 (359)
Q Consensus 37 ~~i~~~~-~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~~~ 115 (359)
.++++.+ ++.++.++..++.|..||..+++... .+.........+++++.++.++++..
T Consensus 536 ~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~--------------------~~~~H~~~V~~l~~~p~~~~~L~Sgs 595 (793)
T PLN00181 536 SGICWNSYIKSQVASSNFEGVVQVWDVARSQLVT--------------------EMKEHEKRVWSIDYSSADPTLLASGS 595 (793)
T ss_pred eeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEE--------------------EecCCCCCEEEEEEcCCCCCEEEEEc
Confidence 4667766 36667788889999999988753221 12223344678899865666665544
Q ss_pred C-CcEEEEeCCCCeEEEEeecCCCccccccceEEEe-CCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCCc-
Q 018242 116 Y-FGLLKVGPEGGLATAVATQSEGIPFRFCNSLDID-QSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQ- 192 (359)
Q Consensus 116 ~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d-~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~- 192 (359)
. +.|..+|..++........ ...+..+.+. ++|+ .+++- ...+.|..||..+..
T Consensus 596 ~Dg~v~iWd~~~~~~~~~~~~-----~~~v~~v~~~~~~g~-~latg-----------------s~dg~I~iwD~~~~~~ 652 (793)
T PLN00181 596 DDGSVKLWSINQGVSIGTIKT-----KANICCVQFPSESGR-SLAFG-----------------SADHKVYYYDLRNPKL 652 (793)
T ss_pred CCCEEEEEECCCCcEEEEEec-----CCCeEEEEEeCCCCC-EEEEE-----------------eCCCeEEEEECCCCCc
Confidence 4 4588889877653221111 1234456664 5677 44441 335689999986543
Q ss_pred -EEEEeCCCCCCceEEEccCCCEEEEEecCCCEEEEEEcCCCCC----cceeEeecCCCCCCceEECCCCCEEEEEecCC
Q 018242 193 -VTVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKA----GTIEIVAQLPGFPDNIKRSPRGGFWVGIHSRR 267 (359)
Q Consensus 193 -~~~~~~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~----~~~~~~~~~~~~p~~i~~d~~G~lwv~~~~~~ 267 (359)
...+..+......+.+. +++ .+++.+.++.|..||+..... .....+.........+.++++|.+.++....+
T Consensus 653 ~~~~~~~h~~~V~~v~f~-~~~-~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~ 730 (793)
T PLN00181 653 PLCTMIGHSKTVSYVRFV-DSS-TLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETN 730 (793)
T ss_pred cceEecCCCCCEEEEEEe-CCC-EEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCC
Confidence 22222333345677775 565 456667788999999853211 11122222223345578888887666554444
No 111
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=98.07 E-value=0.0064 Score=53.34 Aligned_cols=233 Identities=15% Similarity=0.112 Sum_probs=125.3
Q ss_pred ccccCCcceEEEEecCCCeEEEEeCCCc-EEEEeCC--C--CeEEEEeecCC----CccccccceEEEeCCCCEEEEEeC
Q 018242 91 KEHICGRPLGLCFNKTNGDLYIADAYFG-LLKVGPE--G--GLATAVATQSE----GIPFRFCNSLDIDQSTGIIYFTDS 161 (359)
Q Consensus 91 ~~~~~~~p~gi~~~~~~g~l~v~~~~~~-i~~~~~~--~--~~~~~~~~~~~----~~~~~~~~~l~~d~~g~~l~v~d~ 161 (359)
.+....+++||++.| .+.+||++...+ ...||.. + +..+.+.-.++ ......|.++++..-.. +-|+..
T Consensus 18 tDp~L~N~WGia~~p-~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~-F~vt~~ 95 (336)
T TIGR03118 18 VDPGLRNAWGLSYRP-GGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDT-FVVSGE 95 (336)
T ss_pred cCccccccceeEecC-CCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCc-eEEcCC
Confidence 344556799999999 899999987655 3455544 1 11111111111 11224577777765444 333321
Q ss_pred CCccccccceeeeeecCCCceEEEEeCCCCcE------EEEeCC--CCCCceEEEcc--CCCEEEEEecCCCEEEEEEcC
Q 018242 162 SSQFQRRNHISVILSGDKTGRLMKYDPATKQV------TVLLGN--LSFPNGVALSE--DGNYILLAETTSCRILRYWLK 231 (359)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~------~~~~~~--~~~p~gia~~~--d~~~l~v~~~~~~~i~~~~~~ 231 (359)
+..- ....+-.+..|.|--|.+.-+.. ..+... ...=.|+|+.. .+..||.++..+++|-+||-.
T Consensus 96 g~~~-----~a~Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~ 170 (336)
T TIGR03118 96 GITG-----PSRFLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGS 170 (336)
T ss_pred Cccc-----ceeEEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCc
Confidence 1000 00000112234555555432211 112111 11124777763 356899999999999999843
Q ss_pred CCCCcceeEeec--CCC--CCCceEECCCCCEEEEEecCCCccccccccCCccceeeecCCccceeeeeecccccCcceE
Q 018242 232 TSKAGTIEIVAQ--LPG--FPDNIKRSPRGGFWVGIHSRRKGISKLVLSFPWIGNVLIKLPIDIVKIHSSLVKLSGNGGM 307 (359)
Q Consensus 232 ~~~~~~~~~~~~--~~~--~p~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (359)
=.+......|.+ +|. -|-||.-- .|+|||+--.... .+ ...++ +... +.
T Consensus 171 f~~~~~~g~F~DP~iPagyAPFnIqni-g~~lyVtYA~qd~-----------~~--~d~v~------------G~G~-G~ 223 (336)
T TIGR03118 171 FRPPPLPGSFIDPALPAGYAPFNVQNL-GGTLYVTYAQQDA-----------DR--NDEVA------------GAGL-GY 223 (336)
T ss_pred cccccCCCCccCCCCCCCCCCcceEEE-CCeEEEEEEecCC-----------cc--ccccc------------CCCc-ce
Confidence 211111122333 221 25566442 4789986543211 00 01111 1122 67
Q ss_pred EEEECCCCCEEEEEEccCCceeeceEEEEE-------eCCEEEEecCCCCeEEEEcCCC
Q 018242 308 AMRISEQGNVLEILEEIGRKMWRSISEVEE-------KDGNLWIGSVNMPYAGLYNYSS 359 (359)
Q Consensus 308 ~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~-------~~g~l~ig~~~~~~l~~~~~~~ 359 (359)
+-.||.+|+.++.+.. +..++.+.++.. -.|.|+||++.+.+|-.++..|
T Consensus 224 VdvFd~~G~l~~r~as--~g~LNaPWG~a~APa~FG~~sg~lLVGNFGDG~InaFD~~s 280 (336)
T TIGR03118 224 VNVFTLNGQLLRRVAS--SGRLNAPWGLAIAPESFGSLSGALLVGNFGDGTINAYDPQS 280 (336)
T ss_pred EEEEcCCCcEEEEecc--CCcccCCceeeeChhhhCCCCCCeEEeecCCceeEEecCCC
Confidence 8899999999999864 444666655542 2689999999999999998753
No 112
>PRK01029 tolB translocation protein TolB; Provisional
Probab=98.03 E-value=0.013 Score=55.57 Aligned_cols=142 Identities=12% Similarity=0.114 Sum_probs=74.3
Q ss_pred EEEecCCCe---EEEEeCC--CcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeee
Q 018242 101 LCFNKTNGD---LYIADAY--FGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVIL 175 (359)
Q Consensus 101 i~~~~~~g~---l~v~~~~--~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~ 175 (359)
-+++|++.. +|++... ..|+.++.++++.+.+.. ..+ ......++|||++|.++....
T Consensus 190 P~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~-~~g----~~~~p~wSPDG~~Laf~s~~~------------ 252 (428)
T PRK01029 190 PTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILA-LQG----NQLMPTFSPRKKLLAFISDRY------------ 252 (428)
T ss_pred ceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeec-CCC----CccceEECCCCCEEEEEECCC------------
Confidence 357884333 2344322 259999999887665533 221 122468999998676663210
Q ss_pred ecCCCceEEE--EeCCC---CcEEEEeCC-CCCCceEEEccCCCEEEEEecCC--CEEEEEEcCCCCCcceeEeecCCCC
Q 018242 176 SGDKTGRLMK--YDPAT---KQVTVLLGN-LSFPNGVALSEDGNYILLAETTS--CRILRYWLKTSKAGTIEIVAQLPGF 247 (359)
Q Consensus 176 ~~~~~g~v~~--~d~~~---~~~~~~~~~-~~~p~gia~~~d~~~l~v~~~~~--~~i~~~~~~~~~~~~~~~~~~~~~~ 247 (359)
....++. ++..+ +..+.+... .......+++|||+.++++...+ ..|++++++... +..+.+......
T Consensus 253 ---g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g-~~~~~lt~~~~~ 328 (428)
T PRK01029 253 ---GNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEG-QSPRLLTKKYRN 328 (428)
T ss_pred ---CCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccc-cceEEeccCCCC
Confidence 0112333 44432 233333322 22234678999999766655333 368887764321 112222222222
Q ss_pred CCceEECCCCC-EEEEE
Q 018242 248 PDNIKRSPRGG-FWVGI 263 (359)
Q Consensus 248 p~~i~~d~~G~-lwv~~ 263 (359)
.....+++||+ |.++.
T Consensus 329 ~~~p~wSPDG~~Laf~~ 345 (428)
T PRK01029 329 SSCPAWSPDGKKIAFCS 345 (428)
T ss_pred ccceeECCCCCEEEEEE
Confidence 34578899997 44443
No 113
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=98.02 E-value=0.0001 Score=64.22 Aligned_cols=42 Identities=19% Similarity=0.222 Sum_probs=35.4
Q ss_pred EEeeCCCCCCceEEEccCCCeeEEecCCCEEEEEEcCCcceE
Q 018242 27 QYQIEGAIGPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWL 68 (359)
Q Consensus 27 ~~~~~~~~~p~~i~~~~~G~~l~~~~~~~~i~~~d~~~~~~~ 68 (359)
.|.-++-..||+..|+|||..+..+.-+|.|-.||-.+++.+
T Consensus 207 ~IKFg~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlr 248 (508)
T KOG0275|consen 207 SIKFGQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLR 248 (508)
T ss_pred heecccccchhheeeCCCCceEeeccccceeeeehhccchhh
Confidence 455566789999999999998888999999999998887543
No 114
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.02 E-value=0.0034 Score=54.27 Aligned_cols=192 Identities=17% Similarity=0.185 Sum_probs=99.9
Q ss_pred CCEEEEeeCC-CCCCceEEEccCCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEE
Q 018242 23 QGVVQYQIEG-AIGPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGL 101 (359)
Q Consensus 23 ~~~~~~~~~~-~~~p~~i~~~~~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi 101 (359)
+.+-+...++ ..++.......+|+ +|+...++.|+.+|+.+++...-.. .......+ .
T Consensus 14 ~~~W~~~~~~~~~~~~~~~~~~~~~-v~~~~~~~~l~~~d~~tG~~~W~~~------------------~~~~~~~~--~ 72 (238)
T PF13360_consen 14 KELWSYDLGPGIGGPVATAVPDGGR-VYVASGDGNLYALDAKTGKVLWRFD------------------LPGPISGA--P 72 (238)
T ss_dssp EEEEEEECSSSCSSEEETEEEETTE-EEEEETTSEEEEEETTTSEEEEEEE------------------CSSCGGSG--E
T ss_pred CEEEEEECCCCCCCccceEEEeCCE-EEEEcCCCEEEEEECCCCCEEEEee------------------ccccccce--e
Confidence 3344555532 23333224445555 8888888999999998875433211 10110111 1
Q ss_pred EEecCCCeEEEEeCCCcEEEEeCCCCeEEEE-eecC-CCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCC
Q 018242 102 CFNKTNGDLYIADAYFGLLKVGPEGGLATAV-ATQS-EGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDK 179 (359)
Q Consensus 102 ~~~~~~g~l~v~~~~~~i~~~~~~~~~~~~~-~~~~-~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~ 179 (359)
... ++.+|++...+.|+.+|.++|+.... .... +...........++ ++.+|++..
T Consensus 73 -~~~-~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~------------------ 130 (238)
T PF13360_consen 73 -VVD-GGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVD--GDRLYVGTS------------------ 130 (238)
T ss_dssp -EEE-TTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEE--TTEEEEEET------------------
T ss_pred -eec-ccccccccceeeeEecccCCcceeeeeccccccccccccccCceEe--cCEEEEEec------------------
Confidence 222 78899887656799999888886543 1211 11112222334444 444888732
Q ss_pred CceEEEEeCCCCcEEEEeCCCCCC-----------ceEEEccCCCEEEEEecCCCEEEEEEcCCCCCcceeEeecCCCCC
Q 018242 180 TGRLMKYDPATKQVTVLLGNLSFP-----------NGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFP 248 (359)
Q Consensus 180 ~g~v~~~d~~~~~~~~~~~~~~~p-----------~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p 248 (359)
.+.|+.+|+++|+..........+ .+-.+..++ .+|++.... .+..+|+..++ ..+......+
T Consensus 131 ~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g-~~~~~d~~tg~----~~w~~~~~~~ 204 (238)
T PF13360_consen 131 SGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVISDG-RVYVSSGDG-RVVAVDLATGE----KLWSKPISGI 204 (238)
T ss_dssp CSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECCTT-EEEEECCTS-SEEEEETTTTE----EEEEECSS-E
T ss_pred cCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEECC-EEEEEcCCC-eEEEEECCCCC----EEEEecCCCc
Confidence 467999999988875433221111 122222244 678876554 36666765442 2232222212
Q ss_pred CceEECCCCCEEEEE
Q 018242 249 DNIKRSPRGGFWVGI 263 (359)
Q Consensus 249 ~~i~~d~~G~lwv~~ 263 (359)
.....-.++.+|+++
T Consensus 205 ~~~~~~~~~~l~~~~ 219 (238)
T PF13360_consen 205 YSLPSVDGGTLYVTS 219 (238)
T ss_dssp CECEECCCTEEEEEE
T ss_pred cCCceeeCCEEEEEe
Confidence 332334456788877
No 115
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.01 E-value=0.0076 Score=52.06 Aligned_cols=102 Identities=19% Similarity=0.226 Sum_probs=61.2
Q ss_pred CCeEEEEeCCCcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEE
Q 018242 107 NGDLYIADAYFGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKY 186 (359)
Q Consensus 107 ~g~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~ 186 (359)
++.+|+++..+.|+.+|.++|+....... +. +...+ ....+++ +|+... .+.++.+
T Consensus 36 ~~~v~~~~~~~~l~~~d~~tG~~~W~~~~-~~-~~~~~---~~~~~~~-v~v~~~------------------~~~l~~~ 91 (238)
T PF13360_consen 36 GGRVYVASGDGNLYALDAKTGKVLWRFDL-PG-PISGA---PVVDGGR-VYVGTS------------------DGSLYAL 91 (238)
T ss_dssp TTEEEEEETTSEEEEEETTTSEEEEEEEC-SS-CGGSG---EEEETTE-EEEEET------------------TSEEEEE
T ss_pred CCEEEEEcCCCEEEEEECCCCCEEEEeec-cc-cccce---eeecccc-cccccc------------------eeeeEec
Confidence 89999998777899999998886433222 11 11122 2333555 888842 3479999
Q ss_pred eCCCCcEEEEe-CCC----CCCceEEEccCCCEEEEEecCCCEEEEEEcCCC
Q 018242 187 DPATKQVTVLL-GNL----SFPNGVALSEDGNYILLAETTSCRILRYWLKTS 233 (359)
Q Consensus 187 d~~~~~~~~~~-~~~----~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~ 233 (359)
|..+|+..... ... ..........+++.+|+... ++.|+.+|++.+
T Consensus 92 d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~l~~~d~~tG 142 (238)
T PF13360_consen 92 DAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTS-SGKLVALDPKTG 142 (238)
T ss_dssp ETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEET-CSEEEEEETTTT
T ss_pred ccCCcceeeeeccccccccccccccCceEecCEEEEEec-cCcEEEEecCCC
Confidence 98888877642 211 11112222223565676654 678999997654
No 116
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.00 E-value=0.015 Score=56.37 Aligned_cols=169 Identities=16% Similarity=0.127 Sum_probs=83.1
Q ss_pred CCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEEeC---------
Q 018242 45 GEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIADA--------- 115 (359)
Q Consensus 45 G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~~~--------- 115 (359)
++ +|+++.++.|+.+|.++++...-........ . . ......| .+. ++.+|++..
T Consensus 111 ~~-V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~~-----~-----~-~~i~ssP---~v~--~~~v~vg~~~~~~~~~~~ 173 (488)
T cd00216 111 RK-VFFGTFDGRLVALDAETGKQVWKFGNNDQVP-----P-----G-YTMTGAP---TIV--KKLVIIGSSGAEFFACGV 173 (488)
T ss_pred Ce-EEEecCCCeEEEEECCCCCEeeeecCCCCcC-----c-----c-eEecCCC---EEE--CCEEEEeccccccccCCC
Confidence 55 8888889999999999876443321110000 0 0 0011112 233 466777642
Q ss_pred CCcEEEEeCCCCeEEEEeecCCCc----cc------------c-ccceEEEeCCCCEEEEEeCCCc---cccccceeeee
Q 018242 116 YFGLLKVGPEGGLATAVATQSEGI----PF------------R-FCNSLDIDQSTGIIYFTDSSSQ---FQRRNHISVIL 175 (359)
Q Consensus 116 ~~~i~~~~~~~~~~~~~~~~~~~~----~~------------~-~~~~l~~d~~g~~l~v~d~~~~---~~~~~~~~~~~ 175 (359)
.+.++.+|.++|+..-........ +. . .-...++|+.+.++|+...... +..+. -..
T Consensus 174 ~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~---~~~ 250 (488)
T cd00216 174 RGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRR---TPG 250 (488)
T ss_pred CcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCcc---CCC
Confidence 234888999988764332211110 00 0 0023567765544898843210 00000 000
Q ss_pred ecCCCceEEEEeCCCCcEEEEeCCC-------CCCceEEEc----cCCC--EEEEEecCCCEEEEEEcCCC
Q 018242 176 SGDKTGRLMKYDPATKQVTVLLGNL-------SFPNGVALS----EDGN--YILLAETTSCRILRYWLKTS 233 (359)
Q Consensus 176 ~~~~~g~v~~~d~~~~~~~~~~~~~-------~~p~gia~~----~d~~--~l~v~~~~~~~i~~~~~~~~ 233 (359)
.....+.|+.+|.++|+........ ..+....+. -+++ .+.+..+.++.++.+|....
T Consensus 251 ~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG 321 (488)
T cd00216 251 DNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTG 321 (488)
T ss_pred CCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCC
Confidence 0122357999999999888653211 111111111 2332 13333456678999987654
No 117
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=97.99 E-value=0.0017 Score=58.63 Aligned_cols=214 Identities=15% Similarity=0.061 Sum_probs=120.3
Q ss_pred CCCc-eEEEccCCCeeEEecCCCEEEEEEcCCcc-eEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCC-C-e
Q 018242 34 IGPE-SLAFDALGEGPYTGVSDGRIIKWHQDQRR-WLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTN-G-D 109 (359)
Q Consensus 34 ~~p~-~i~~~~~G~~l~~~~~~~~i~~~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~-g-~ 109 (359)
.+|- ...++.++..+.++...|.+-.|+-.+.. ..+ +.....+..++.|.|.+ + +
T Consensus 175 ~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~---------------------l~gH~~~v~~~~fhP~~~~~~ 233 (459)
T KOG0272|consen 175 TRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQT---------------------LRGHTSRVGAAVFHPVDSDLN 233 (459)
T ss_pred CCcceeeEeecCCCeEEEeecCCceeEeecCCcceeEE---------------------EeccccceeeEEEccCCCccc
Confidence 3555 45577889988889998888888865532 222 23333456678888852 3 4
Q ss_pred EEEEeCCCcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCC
Q 018242 110 LYIADAYFGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPA 189 (359)
Q Consensus 110 l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~ 189 (359)
+..+...+.+..++.++.. .+.. ..+ ....+..++++|+|+ +..+. . | +..=..||..
T Consensus 234 lat~s~Dgtvklw~~~~e~--~l~~-l~g-H~~RVs~VafHPsG~-~L~Ta-s--f--------------D~tWRlWD~~ 291 (459)
T KOG0272|consen 234 LATASADGTVKLWKLSQET--PLQD-LEG-HLARVSRVAFHPSGK-FLGTA-S--F--------------DSTWRLWDLE 291 (459)
T ss_pred eeeeccCCceeeeccCCCc--chhh-hhc-chhhheeeeecCCCc-eeeec-c--c--------------ccchhhcccc
Confidence 4444433335555555421 2211 111 123567899999999 44442 1 1 1122235665
Q ss_pred CCcEEE-EeCCCCCCceEEEccCCCEEEEEecCCCEEEEEEcCCCCCcceeEeec-CCCCCCceEECCCCCEEEEEecCC
Q 018242 190 TKQVTV-LLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQ-LPGFPDNIKRSPRGGFWVGIHSRR 267 (359)
Q Consensus 190 ~~~~~~-~~~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~p~~i~~d~~G~lwv~~~~~~ 267 (359)
++.... ..++-.....++|.+||. |..++..+..=.+||+... ....+.. ...-.-++.++|+|...++....+
T Consensus 292 tk~ElL~QEGHs~~v~~iaf~~DGS-L~~tGGlD~~~RvWDlRtg---r~im~L~gH~k~I~~V~fsPNGy~lATgs~Dn 367 (459)
T KOG0272|consen 292 TKSELLLQEGHSKGVFSIAFQPDGS-LAATGGLDSLGRVWDLRTG---RCIMFLAGHIKEILSVAFSPNGYHLATGSSDN 367 (459)
T ss_pred cchhhHhhcccccccceeEecCCCc-eeeccCccchhheeecccC---cEEEEecccccceeeEeECCCceEEeecCCCC
Confidence 543322 234456678999999997 6777666655566786543 2233333 223356799999997665544433
Q ss_pred CccccccccCC-ccceeeecCCccceeeeeecc
Q 018242 268 KGISKLVLSFP-WIGNVLIKLPIDIVKIHSSLV 299 (359)
Q Consensus 268 ~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~ 299 (359)
. ..+++ +..+.+..+|-...-++.+.+
T Consensus 368 t-----~kVWDLR~r~~ly~ipAH~nlVS~Vk~ 395 (459)
T KOG0272|consen 368 T-----CKVWDLRMRSELYTIPAHSNLVSQVKY 395 (459)
T ss_pred c-----EEEeeecccccceecccccchhhheEe
Confidence 2 44444 244445556655444443333
No 118
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=97.99 E-value=0.0031 Score=55.13 Aligned_cols=187 Identities=14% Similarity=0.143 Sum_probs=109.2
Q ss_pred ceEEEccCCCeeEEecCCCEEEEEEcCCcc-eEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEEeC
Q 018242 37 ESLAFDALGEGPYTGVSDGRIIKWHQDQRR-WLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIADA 115 (359)
Q Consensus 37 ~~i~~~~~G~~l~~~~~~~~i~~~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~~~ 115 (359)
.++++++||+.|.+++.+..|-.||...+. .+.+. + .....+..+.|.+.+..++.-
T Consensus 69 ~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rir-------------------f---~spv~~~q~hp~k~n~~va~~ 126 (405)
T KOG1273|consen 69 TSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIR-------------------F---DSPVWGAQWHPRKRNKCVATI 126 (405)
T ss_pred eEEEecCCCCEeeeecCCceeEEEeccCCCceeEEE-------------------c---cCccceeeeccccCCeEEEEE
Confidence 389999999999999999999999987653 22221 1 112356667776777777643
Q ss_pred -CCcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCCcEE
Q 018242 116 -YFGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQVT 194 (359)
Q Consensus 116 -~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~ 194 (359)
...-+.++....+.+.+....++.....+....+|+.|+++|.++ ..|.+..++.++.++.
T Consensus 127 ~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGt------------------sKGkllv~~a~t~e~v 188 (405)
T KOG1273|consen 127 MEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGT------------------SKGKLLVYDAETLECV 188 (405)
T ss_pred ecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEec------------------CcceEEEEecchheee
Confidence 222333444334444443322333334555568999999777773 3468888998875443
Q ss_pred EE--eCCCCCCceEEEccCCCEEEEEecCCCEEEEEEcCCC----CCcceeE---eec-CCCCC-CceEECCCCCEEEEE
Q 018242 195 VL--LGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTS----KAGTIEI---VAQ-LPGFP-DNIKRSPRGGFWVGI 263 (359)
Q Consensus 195 ~~--~~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~----~~~~~~~---~~~-~~~~p-~~i~~d~~G~lwv~~ 263 (359)
.- .........|.++..|+ .++.++.+.-|..|++..- +.+..+. +.+ ....+ ...+++.+|.+.+|.
T Consensus 189 as~rits~~~IK~I~~s~~g~-~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~ 267 (405)
T KOG1273|consen 189 ASFRITSVQAIKQIIVSRKGR-FLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAG 267 (405)
T ss_pred eeeeechheeeeEEEEeccCc-EEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCCccEEEec
Confidence 21 11123345677777776 4666677777888886421 1111111 111 11223 347889999655555
Q ss_pred e
Q 018242 264 H 264 (359)
Q Consensus 264 ~ 264 (359)
.
T Consensus 268 s 268 (405)
T KOG1273|consen 268 S 268 (405)
T ss_pred c
Confidence 4
No 119
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=97.98 E-value=0.00035 Score=67.45 Aligned_cols=186 Identities=14% Similarity=0.131 Sum_probs=115.7
Q ss_pred CCc-eEEEccCCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcc-eEEEEecCCCeEEE
Q 018242 35 GPE-SLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRP-LGLCFNKTNGDLYI 112 (359)
Q Consensus 35 ~p~-~i~~~~~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~gi~~~~~~g~l~v 112 (359)
+|. +..|.|+.++|..+.++..+..|..++..-.. .......| ..+.|.| .|..|+
T Consensus 452 GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V---------------------~y~GH~~PVwdV~F~P-~GyYFa 509 (707)
T KOG0263|consen 452 GPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLV---------------------IYKGHLAPVWDVQFAP-RGYYFA 509 (707)
T ss_pred CceeeeeecccccceeeccCCcceeeeecccceeEE---------------------EecCCCcceeeEEecC-CceEEE
Confidence 554 88899999988888999999999988752111 11122234 4566887 777777
Q ss_pred EeCCCcEEE-EeCCCCeE-EEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCC
Q 018242 113 ADAYFGLLK-VGPEGGLA-TAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPAT 190 (359)
Q Consensus 113 ~~~~~~i~~-~~~~~~~~-~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~ 190 (359)
+...++..+ +..+..+. +.++. ....+.-+.++|+.+ |+++-+ ..-.|-.||..+
T Consensus 510 tas~D~tArLWs~d~~~PlRifag-----hlsDV~cv~FHPNs~--Y~aTGS----------------sD~tVRlWDv~~ 566 (707)
T KOG0263|consen 510 TASHDQTARLWSTDHNKPLRIFAG-----HLSDVDCVSFHPNSN--YVATGS----------------SDRTVRLWDVST 566 (707)
T ss_pred ecCCCceeeeeecccCCchhhhcc-----cccccceEEECCccc--ccccCC----------------CCceEEEEEcCC
Confidence 655444332 22222221 11221 223455588999998 555322 234677788777
Q ss_pred CcEEEE-eCCCCCCceEEEccCCCEEEEEecCCCEEEEEEcCCCCCcceeEeecCCCCCCceEECCCCCEEEEEecCCC
Q 018242 191 KQVTVL-LGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGGFWVGIHSRRK 268 (359)
Q Consensus 191 ~~~~~~-~~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lwv~~~~~~~ 268 (359)
|....+ .++......++++|+|++ +++...++.|..||+..... ...+....+....+.++.+|++.+...++..
T Consensus 567 G~~VRiF~GH~~~V~al~~Sp~Gr~-LaSg~ed~~I~iWDl~~~~~--v~~l~~Ht~ti~SlsFS~dg~vLasgg~Dns 642 (707)
T KOG0263|consen 567 GNSVRIFTGHKGPVTALAFSPCGRY-LASGDEDGLIKIWDLANGSL--VKQLKGHTGTIYSLSFSRDGNVLASGGADNS 642 (707)
T ss_pred CcEEEEecCCCCceEEEEEcCCCce-EeecccCCcEEEEEcCCCcc--hhhhhcccCceeEEEEecCCCEEEecCCCCe
Confidence 655544 444555689999999985 55666778999999865422 1112222344567899999998887766543
No 120
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=97.96 E-value=0.0091 Score=59.16 Aligned_cols=155 Identities=14% Similarity=0.136 Sum_probs=94.7
Q ss_pred CCceEEEccCCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEEe
Q 018242 35 GPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIAD 114 (359)
Q Consensus 35 ~p~~i~~~~~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~~ 114 (359)
+=..|+++++|..++++..++-|.+|+....+ .+|+ .+...+....+++.. .+.+.++.
T Consensus 15 G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~-----------------e~P~--ti~~~g~~v~~ia~~--s~~f~~~s 73 (933)
T KOG1274|consen 15 GLTLICYDPDGEFICTCGSDGDIRKWKTNSDE-----------------EEPE--TIDISGELVSSIACY--SNHFLTGS 73 (933)
T ss_pred ceEEEEEcCCCCEEEEecCCCceEEeecCCcc-----------------cCCc--hhhccCceeEEEeec--ccceEEee
Confidence 56789999999988999999999999865431 0011 111111223444443 45666667
Q ss_pred CCCcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCCcEE
Q 018242 115 AYFGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQVT 194 (359)
Q Consensus 115 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~ 194 (359)
.++.|.+|....++...+..++. ..++.++++.+|+ ..++ .+ -.-.|-+++..+...+
T Consensus 74 ~~~tv~~y~fps~~~~~iL~Rft----lp~r~~~v~g~g~-~iaa-gs----------------dD~~vK~~~~~D~s~~ 131 (933)
T KOG1274|consen 74 EQNTVLRYKFPSGEEDTILARFT----LPIRDLAVSGSGK-MIAA-GS----------------DDTAVKLLNLDDSSQE 131 (933)
T ss_pred ccceEEEeeCCCCCccceeeeee----ccceEEEEecCCc-EEEe-ec----------------CceeEEEEeccccchh
Confidence 77789999887776543433222 1356789999998 3333 11 1113555554433333
Q ss_pred EE-eCCCCCCceEEEccCCCEEEEEecCCCEEEEEEcCCC
Q 018242 195 VL-LGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTS 233 (359)
Q Consensus 195 ~~-~~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~ 233 (359)
.. ...-...-++.++|.++.|-+ .+.++.|+.|+++..
T Consensus 132 ~~lrgh~apVl~l~~~p~~~fLAv-ss~dG~v~iw~~~~~ 170 (933)
T KOG1274|consen 132 KVLRGHDAPVLQLSYDPKGNFLAV-SSCDGKVQIWDLQDG 170 (933)
T ss_pred eeecccCCceeeeeEcCCCCEEEE-EecCceEEEEEcccc
Confidence 32 233334468999999985544 457789999998754
No 121
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=97.95 E-value=0.012 Score=52.40 Aligned_cols=152 Identities=16% Similarity=0.111 Sum_probs=95.3
Q ss_pred eEEEccCCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEE-eCC
Q 018242 38 SLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIA-DAY 116 (359)
Q Consensus 38 ~i~~~~~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~-~~~ 116 (359)
+++.+|+.++..++..+..-+.|+..++++-- .+.........+.|+. +|.+.++ +..
T Consensus 69 avsl~P~~~l~aTGGgDD~AflW~~~~ge~~~--------------------eltgHKDSVt~~~Fsh-dgtlLATGdms 127 (399)
T KOG0296|consen 69 AVSLHPNNNLVATGGGDDLAFLWDISTGEFAG--------------------ELTGHKDSVTCCSFSH-DGTLLATGDMS 127 (399)
T ss_pred EEEeCCCCceEEecCCCceEEEEEccCCccee--------------------EecCCCCceEEEEEcc-CceEEEecCCC
Confidence 67778877755566677788999988874211 2223333456788888 6666554 555
Q ss_pred CcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCC-CcEEE
Q 018242 117 FGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPAT-KQVTV 195 (359)
Q Consensus 117 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~-~~~~~ 195 (359)
+.|..+...++..+.... .+...+.=+.++|.+. ++++ +...|.||.|.... +..+.
T Consensus 128 G~v~v~~~stg~~~~~~~----~e~~dieWl~WHp~a~-illA-----------------G~~DGsvWmw~ip~~~~~kv 185 (399)
T KOG0296|consen 128 GKVLVFKVSTGGEQWKLD----QEVEDIEWLKWHPRAH-ILLA-----------------GSTDGSVWMWQIPSQALCKV 185 (399)
T ss_pred ccEEEEEcccCceEEEee----cccCceEEEEeccccc-EEEe-----------------ecCCCcEEEEECCCcceeeE
Confidence 557777777766543222 1122333467889888 6655 34578899998776 34444
Q ss_pred EeCCCCCCceEEEccCCCEEEEEecCCCEEEEEEcCCC
Q 018242 196 LLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTS 233 (359)
Q Consensus 196 ~~~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~ 233 (359)
+.+.....+-=.|.|||+++.. ...++.|.+|+++..
T Consensus 186 ~~Gh~~~ct~G~f~pdGKr~~t-gy~dgti~~Wn~ktg 222 (399)
T KOG0296|consen 186 MSGHNSPCTCGEFIPDGKRILT-GYDDGTIIVWNPKTG 222 (399)
T ss_pred ecCCCCCcccccccCCCceEEE-EecCceEEEEecCCC
Confidence 4443333333357799996554 456889999997654
No 122
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=97.95 E-value=0.0029 Score=53.17 Aligned_cols=112 Identities=13% Similarity=0.094 Sum_probs=69.4
Q ss_pred ceEEEEecCCCeEEEEe--CCCcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeee
Q 018242 98 PLGLCFNKTNGDLYIAD--AYFGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVIL 175 (359)
Q Consensus 98 p~gi~~~~~~g~l~v~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~ 175 (359)
...++++|++.++.+.. ....+..+|.++..+..+. ....+.+.++|+|+++.++..+
T Consensus 62 I~~~~WsP~g~~favi~g~~~~~v~lyd~~~~~i~~~~-------~~~~n~i~wsP~G~~l~~~g~~------------- 121 (194)
T PF08662_consen 62 IHDVAWSPNGNEFAVIYGSMPAKVTLYDVKGKKIFSFG-------TQPRNTISWSPDGRFLVLAGFG------------- 121 (194)
T ss_pred eEEEEECcCCCEEEEEEccCCcccEEEcCcccEeEeec-------CCCceEEEECCCCCEEEEEEcc-------------
Confidence 67899999555555553 2235888888744433221 1345789999999955555322
Q ss_pred ecCCCceEEEEeCCCCcEEEEeCCCCCCceEEEccCCCEEEEEecC-----CCEEEEEEcCC
Q 018242 176 SGDKTGRLMKYDPATKQVTVLLGNLSFPNGVALSEDGNYILLAETT-----SCRILRYWLKT 232 (359)
Q Consensus 176 ~~~~~g~v~~~d~~~~~~~~~~~~~~~p~gia~~~d~~~l~v~~~~-----~~~i~~~~~~~ 232 (359)
...|.|..+|.++.+.... ..-.....++++|||+++..+.+. ++++..|+..+
T Consensus 122 --n~~G~l~~wd~~~~~~i~~-~~~~~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~G 180 (194)
T PF08662_consen 122 --NLNGDLEFWDVRKKKKIST-FEHSDATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQG 180 (194)
T ss_pred --CCCcEEEEEECCCCEEeec-cccCcEEEEEEcCCCCEEEEEEeccceeccccEEEEEecC
Confidence 2346788899874433221 122335789999999987766553 45566666544
No 123
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=97.95 E-value=0.0092 Score=52.32 Aligned_cols=159 Identities=15% Similarity=0.134 Sum_probs=85.0
Q ss_pred ceEEEccCCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEEeC-
Q 018242 37 ESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIADA- 115 (359)
Q Consensus 37 ~~i~~~~~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~~~- 115 (359)
.+++|++||+.+.+...++.|..|+.+.-+- .+++. +...-....|.-++|.|+-..+.++-.
T Consensus 90 t~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~------~eHr~----------~R~nve~dhpT~V~FapDc~s~vv~~~~ 153 (420)
T KOG2096|consen 90 TDVAFSSDGKKLATISGDRSIRLWDVRDFEN------KEHRC----------IRQNVEYDHPTRVVFAPDCKSVVVSVKR 153 (420)
T ss_pred eeeEEcCCCceeEEEeCCceEEEEecchhhh------hhhhH----------hhccccCCCceEEEECCCcceEEEEEcc
Confidence 4899999999777888889999998765100 00100 011111235778888885455555433
Q ss_pred CCcEEEEeCC---CCeEEEEeecCCCcccc-----ccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEe
Q 018242 116 YFGLLKVGPE---GGLATAVATQSEGIPFR-----FCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYD 187 (359)
Q Consensus 116 ~~~i~~~~~~---~~~~~~~~~~~~~~~~~-----~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d 187 (359)
++.|+.|... .|....-........+. .+-++-+. ++. .|+...+ ..-.|..|+
T Consensus 154 g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA-~~~-k~imsas----------------~dt~i~lw~ 215 (420)
T KOG2096|consen 154 GNKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIA-GNA-KYIMSAS----------------LDTKICLWD 215 (420)
T ss_pred CCEEEEEEeeecccCCCCcccccccccccchhcccceEEEeec-CCc-eEEEEec----------------CCCcEEEEe
Confidence 3446665432 12211100111111111 11122222 333 4555322 233688889
Q ss_pred CCCCcEEEEeCCCCCCceEEEccCCCEEEEEecCCCEEEEEEc
Q 018242 188 PATKQVTVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWL 230 (359)
Q Consensus 188 ~~~~~~~~~~~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~ 230 (359)
..+..+..+......-...+++|+|+.+.++.. +--+.+|.+
T Consensus 216 lkGq~L~~idtnq~~n~~aavSP~GRFia~~gF-TpDVkVwE~ 257 (420)
T KOG2096|consen 216 LKGQLLQSIDTNQSSNYDAAVSPDGRFIAVSGF-TPDVKVWEP 257 (420)
T ss_pred cCCceeeeeccccccccceeeCCCCcEEEEecC-CCCceEEEE
Confidence 886555555555555567789999997766654 445777765
No 124
>COG2133 Glucose/sorbosone dehydrogenases [Carbohydrate transport and metabolism]
Probab=97.93 E-value=0.017 Score=53.33 Aligned_cols=185 Identities=14% Similarity=0.026 Sum_probs=93.9
Q ss_pred CCCCCceEEEccCCCeeEEecCC-CEEEEEEcCCcceEEEeecCCCCC-CCCCCccccc----ccccccCCcceEEEEec
Q 018242 32 GAIGPESLAFDALGEGPYTGVSD-GRIIKWHQDQRRWLHFARTSPNRD-GCEGAYEYDH----AAKEHICGRPLGLCFNK 105 (359)
Q Consensus 32 ~~~~p~~i~~~~~G~~l~~~~~~-~~i~~~d~~~~~~~~~~~~~~~~~-~~~~~~~~~~----~~~~~~~~~p~gi~~~~ 105 (359)
++..|+++...|+|+ +.+.... +.+..+..... ...- ....+. ...+..+-.. ..+......+.++++.
T Consensus 65 gLe~p~~~~~lP~G~-~~v~er~~G~l~~i~~g~~-~~~~--~~~~~~~~~~~~~Gll~~al~~~fa~~~~~~~~~a~~- 139 (399)
T COG2133 65 GLEHPWGLARLPDGV-LLVTERPTGRLRLISDGGS-ASPP--VSTVPIVLLRGQGGLLDIALSPDFAQGRLVYFGISEP- 139 (399)
T ss_pred cccCchhheecCCce-EEEEccCCccEEEecCCCc-cccc--ccccceEEeccCCCccceEecccccccceeeeEEEee-
Confidence 477999999999995 5555554 66655432211 0000 000000 0000000000 0111222335566555
Q ss_pred CCCeEEEEeCCCcEEEEeCCCCeE---EEEeecCCCccccccceEEEeCCCCEEEEEeCCCcc-----ccccceeeeeec
Q 018242 106 TNGDLYIADAYFGLLKVGPEGGLA---TAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQF-----QRRNHISVILSG 177 (359)
Q Consensus 106 ~~g~l~v~~~~~~i~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~-----~~~~~~~~~~~~ 177 (359)
++.+|+++. ..+.+++....++ +.+....++...++-..|+++|||+ |||+.-+..- ........+.+.
T Consensus 140 -~~~~~~~n~-~~~~~~~~g~~~l~~~~~i~~~lP~~~~H~g~~l~f~pDG~-Lyvs~G~~~~~~~aq~~~~~~Gk~~r~ 216 (399)
T COG2133 140 -GGGLYVANR-VAIGRLPGGDTKLSEPKVIFRGIPKGGHHFGGRLVFGPDGK-LYVTTGSNGDPALAQDNVSLAGKVLRI 216 (399)
T ss_pred -cCCceEEEE-EEEEEcCCCccccccccEEeecCCCCCCcCcccEEECCCCc-EEEEeCCCCCcccccCccccccceeee
Confidence 566677653 3566776221222 2222333333355667899999997 9999644310 000011101111
Q ss_pred CCCceEEEEeCCCCcEEEEeCCCCCCceEEEccCCCEEEEEecCCCEE
Q 018242 178 DKTGRLMKYDPATKQVTVLLGNLSFPNGVALSEDGNYILLAETTSCRI 225 (359)
Q Consensus 178 ~~~g~v~~~d~~~~~~~~~~~~~~~p~gia~~~d~~~l~v~~~~~~~i 225 (359)
. ...+...|+.+...+.+..+...|.|++++|..+.||.++.....+
T Consensus 217 ~-~a~~~~~d~p~~~~~i~s~G~RN~qGl~w~P~tg~Lw~~e~g~d~~ 263 (399)
T COG2133 217 D-RAGIIPADNPFPNSEIWSYGHRNPQGLAWHPVTGALWTTEHGPDAL 263 (399)
T ss_pred c-cCcccccCCCCCCcceEEeccCCccceeecCCCCcEEEEecCCCcc
Confidence 1 1234455555445555566778899999999855699998877555
No 125
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=97.92 E-value=0.0015 Score=55.30 Aligned_cols=139 Identities=11% Similarity=0.083 Sum_probs=93.0
Q ss_pred eEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEEeCCCcEEEEeCCCC
Q 018242 48 PYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIADAYFGLLKVGPEGG 127 (359)
Q Consensus 48 l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~~~~~~i~~~~~~~~ 127 (359)
+..++.++.|..||-.++...+-. ++ ...+..+.+++ +|++.......+|..+|+++-
T Consensus 158 iLSSadd~tVRLWD~rTgt~v~sL------------------~~---~s~VtSlEvs~-dG~ilTia~gssV~Fwdaksf 215 (334)
T KOG0278|consen 158 ILSSADDKTVRLWDHRTGTEVQSL------------------EF---NSPVTSLEVSQ-DGRILTIAYGSSVKFWDAKSF 215 (334)
T ss_pred EEeeccCCceEEEEeccCcEEEEE------------------ec---CCCCcceeecc-CCCEEEEecCceeEEeccccc
Confidence 666678899999998876432211 11 12356777888 788777666778999998763
Q ss_pred e-EEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCCcEEEE-eC-CCCCCc
Q 018242 128 L-ATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQVTVL-LG-NLSFPN 204 (359)
Q Consensus 128 ~-~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~-~~-~~~~p~ 204 (359)
. ++.+. .| ..+......|+.+ +||+ ++....+++||-.+++-... .. ......
T Consensus 216 ~~lKs~k-----~P-~nV~SASL~P~k~-~fVa-----------------Gged~~~~kfDy~TgeEi~~~nkgh~gpVh 271 (334)
T KOG0278|consen 216 GLLKSYK-----MP-CNVESASLHPKKE-FFVA-----------------GGEDFKVYKFDYNTGEEIGSYNKGHFGPVH 271 (334)
T ss_pred cceeecc-----Cc-cccccccccCCCc-eEEe-----------------cCcceEEEEEeccCCceeeecccCCCCceE
Confidence 3 22221 11 2344556778888 9998 23356799999888754433 22 222345
Q ss_pred eEEEccCCCEEEEEecCCCEEEEEEcCCC
Q 018242 205 GVALSEDGNYILLAETTSCRILRYWLKTS 233 (359)
Q Consensus 205 gia~~~d~~~l~v~~~~~~~i~~~~~~~~ 233 (359)
.+.|+|||. +|.+.+.+++|..|.....
T Consensus 272 cVrFSPdGE-~yAsGSEDGTirlWQt~~~ 299 (334)
T KOG0278|consen 272 CVRFSPDGE-LYASGSEDGTIRLWQTTPG 299 (334)
T ss_pred EEEECCCCc-eeeccCCCceEEEEEecCC
Confidence 788999998 9999999999999986543
No 126
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=97.90 E-value=0.0086 Score=55.72 Aligned_cols=195 Identities=15% Similarity=0.083 Sum_probs=112.6
Q ss_pred CceEEEccCCCeeEEecCCCEEEEEEcCCc--ceEEEeecCCCCCCCCCCcccccccccc-cCCcceEEEEecCCCeEEE
Q 018242 36 PESLAFDALGEGPYTGVSDGRIIKWHQDQR--RWLHFARTSPNRDGCEGAYEYDHAAKEH-ICGRPLGLCFNKTNGDLYI 112 (359)
Q Consensus 36 p~~i~~~~~G~~l~~~~~~~~i~~~d~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~p~gi~~~~~~g~l~v 112 (359)
-..+++||.|-+++.+..+..|..||..+- ....|. .+.+ ..+....+.+++.++.+.+
T Consensus 170 Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr------------------~l~P~E~h~i~sl~ys~Tg~~iLv 231 (641)
T KOG0772|consen 170 VSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFR------------------QLQPCETHQINSLQYSVTGDQILV 231 (641)
T ss_pred EEEeeecCCCceeeeccccceEEEEecccccccchhhh------------------ccCcccccccceeeecCCCCeEEE
Confidence 347889999998999999999999998752 233332 1111 1234557888885555555
Q ss_pred EeCCCcEEEEeCCCCeEEEEeec---CC-----CccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEE
Q 018242 113 ADAYFGLLKVGPEGGLATAVATQ---SE-----GIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLM 184 (359)
Q Consensus 113 ~~~~~~i~~~~~~~~~~~~~~~~---~~-----~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~ 184 (359)
.........+|.++-++.....- +. ......++...+.|+.+-.|++. +..|.+.
T Consensus 232 vsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~-----------------s~DgtlR 294 (641)
T KOG0772|consen 232 VSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTC-----------------SYDGTLR 294 (641)
T ss_pred EecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEe-----------------cCCCcEE
Confidence 55444566778877655433210 00 01112344456666655455553 2344555
Q ss_pred EEeCCC--CcEEEEeCCC-----CCCceEEEccCCCEEEEEecCCCEEEEEEcCCCCCcceeE-eec--CCC-CCCceEE
Q 018242 185 KYDPAT--KQVTVLLGNL-----SFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEI-VAQ--LPG-FPDNIKR 253 (359)
Q Consensus 185 ~~d~~~--~~~~~~~~~~-----~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~-~~~--~~~-~p~~i~~ 253 (359)
.||.+. ...+.+.+.. -.|...+|++|++ ++.+.-.++.|..|+...- ...... +.. .++ -...|.|
T Consensus 295 iWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~-~iAagc~DGSIQ~W~~~~~-~v~p~~~vk~AH~~g~~Itsi~F 372 (641)
T KOG0772|consen 295 IWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGK-LIAAGCLDGSIQIWDKGSR-TVRPVMKVKDAHLPGQDITSISF 372 (641)
T ss_pred EEecCCchhheeEEeeccCCCcccCceeeecCCCcc-hhhhcccCCceeeeecCCc-ccccceEeeeccCCCCceeEEEe
Confidence 555432 2333332221 2357889999998 5888888999999986221 111111 111 222 3456899
Q ss_pred CCCCCEEEEEecCC
Q 018242 254 SPRGGFWVGIHSRR 267 (359)
Q Consensus 254 d~~G~lwv~~~~~~ 267 (359)
+.+|++..+-....
T Consensus 373 S~dg~~LlSRg~D~ 386 (641)
T KOG0772|consen 373 SYDGNYLLSRGFDD 386 (641)
T ss_pred ccccchhhhccCCC
Confidence 99998777554443
No 127
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=97.86 E-value=0.0097 Score=52.95 Aligned_cols=202 Identities=15% Similarity=0.123 Sum_probs=116.1
Q ss_pred CCceEEEccCCCeeE-EecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEE
Q 018242 35 GPESLAFDALGEGPY-TGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIA 113 (359)
Q Consensus 35 ~p~~i~~~~~G~~l~-~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~ 113 (359)
=-.+++++|-+. +| ++..+..|-.||..+++.+. .+........++++++.--.+|-+
T Consensus 153 WVr~vavdP~n~-wf~tgs~DrtikIwDlatg~Lkl--------------------tltGhi~~vr~vavS~rHpYlFs~ 211 (460)
T KOG0285|consen 153 WVRSVAVDPGNE-WFATGSADRTIKIWDLATGQLKL--------------------TLTGHIETVRGVAVSKRHPYLFSA 211 (460)
T ss_pred eEEEEeeCCCce-eEEecCCCceeEEEEcccCeEEE--------------------eecchhheeeeeeecccCceEEEe
Confidence 345899999877 55 56778899999999985443 222223446789999744456555
Q ss_pred eCCCcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCCcE
Q 018242 114 DAYFGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQV 193 (359)
Q Consensus 114 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~ 193 (359)
...+.|-.+|++.+++.+- ..+ ....+..+...|.-. +.++- +.+..+..||..+...
T Consensus 212 gedk~VKCwDLe~nkvIR~---YhG-HlS~V~~L~lhPTld-vl~t~-----------------grDst~RvWDiRtr~~ 269 (460)
T KOG0285|consen 212 GEDKQVKCWDLEYNKVIRH---YHG-HLSGVYCLDLHPTLD-VLVTG-----------------GRDSTIRVWDIRTRAS 269 (460)
T ss_pred cCCCeeEEEechhhhhHHH---hcc-ccceeEEEeccccce-eEEec-----------------CCcceEEEeeecccce
Confidence 5455577889988775321 111 234566777777776 66652 3344566677766433
Q ss_pred EE-EeCCCCCCceEEEcc-CCCEEEEEecCCCEEEEEEcCCCCCcceeEeecCCCCCCceEECCCCCEEEEEecCCCccc
Q 018242 194 TV-LLGNLSFPNGVALSE-DGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGGFWVGIHSRRKGIS 271 (359)
Q Consensus 194 ~~-~~~~~~~p~gia~~~-d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lwv~~~~~~~~~~ 271 (359)
.. +.++......+.+.+ |++ +++.+-+.+|..||+..++.- ..+.........++.-|+-+++++...+.
T Consensus 270 V~~l~GH~~~V~~V~~~~~dpq--vit~S~D~tvrlWDl~agkt~--~tlt~hkksvral~lhP~e~~fASas~dn---- 341 (460)
T KOG0285|consen 270 VHVLSGHTNPVASVMCQPTDPQ--VITGSHDSTVRLWDLRAGKTM--ITLTHHKKSVRALCLHPKENLFASASPDN---- 341 (460)
T ss_pred EEEecCCCCcceeEEeecCCCc--eEEecCCceEEEeeeccCcee--EeeecccceeeEEecCCchhhhhccCCcc----
Confidence 32 333333334444443 553 566677789999998765321 11111111234456666555666544333
Q ss_pred cccccCC-ccceeeecCCc
Q 018242 272 KLVLSFP-WIGNVLIKLPI 289 (359)
Q Consensus 272 ~~~~~~~-~~g~~~~~~~~ 289 (359)
+..+. +.|..+.++..
T Consensus 342 --ik~w~~p~g~f~~nlsg 358 (460)
T KOG0285|consen 342 --IKQWKLPEGEFLQNLSG 358 (460)
T ss_pred --ceeccCCccchhhcccc
Confidence 44443 46666666443
No 128
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=97.86 E-value=0.007 Score=52.51 Aligned_cols=156 Identities=13% Similarity=0.080 Sum_probs=98.1
Q ss_pred cccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCCcEEEE--eCCCCCCceEEEccCCCEEEEEe
Q 018242 142 RFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQVTVL--LGNLSFPNGVALSEDGNYILLAE 219 (359)
Q Consensus 142 ~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~--~~~~~~p~gia~~~d~~~l~v~~ 219 (359)
.+-.++.+..+|. ||-+.-. -..+.|.++|++++++... ....-+.+|+++..| .+|..-
T Consensus 45 aFTQGL~~~~~g~-LyESTG~---------------yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d--~l~qLT 106 (264)
T PF05096_consen 45 AFTQGLEFLDDGT-LYESTGL---------------YGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILGD--KLYQLT 106 (264)
T ss_dssp -EEEEEEEEETTE-EEEEECS---------------TTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEETT--EEEEEE
T ss_pred ccCccEEecCCCE-EEEeCCC---------------CCcEEEEEEECCCCcEEEEEECCccccceeEEEECC--EEEEEE
Confidence 4667899988888 9998532 1235799999999876532 233345689998754 489988
Q ss_pred cCCCEEEEEEcCCCCCcceeEeecCCCCCCceEECCCCCEEEEEecCCCccccccccCCccceeeecCCccceeeeeecc
Q 018242 220 TTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGGFWVGIHSRRKGISKLVLSFPWIGNVLIKLPIDIVKIHSSLV 299 (359)
Q Consensus 220 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 299 (359)
..++..++||.+. ......+ ..++-..|++.|. ..||+++..
T Consensus 107 Wk~~~~f~yd~~t--l~~~~~~-~y~~EGWGLt~dg-~~Li~SDGS---------------------------------- 148 (264)
T PF05096_consen 107 WKEGTGFVYDPNT--LKKIGTF-PYPGEGWGLTSDG-KRLIMSDGS---------------------------------- 148 (264)
T ss_dssp SSSSEEEEEETTT--TEEEEEE-E-SSS--EEEECS-SCEEEE-SS----------------------------------
T ss_pred ecCCeEEEEcccc--ceEEEEE-ecCCcceEEEcCC-CEEEEECCc----------------------------------
Confidence 8999999999643 2222222 2344567899763 358887642
Q ss_pred cccCcceEEEEECCC-CCEEEEEEc-cCCceeeceEEEEEeCCEEEEecCCCCeEEEEcCCC
Q 018242 300 KLSGNGGMAMRISEQ-GNVLEILEE-IGRKMWRSISEVEEKDGNLWIGSVNMPYAGLYNYSS 359 (359)
Q Consensus 300 ~~~~~~~~~~~~~~~-g~~~~~~~~-~~g~~~~~~~~~~~~~g~l~ig~~~~~~l~~~~~~~ 359 (359)
..+...||+ -+....+.. .+|.++..+.++.-.+|.||.--|.++.|.++++.+
T Consensus 149 ------~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i~G~IyANVW~td~I~~Idp~t 204 (264)
T PF05096_consen 149 ------SRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYINGKIYANVWQTDRIVRIDPET 204 (264)
T ss_dssp ------SEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEETTEEEEEETTSSEEEEEETTT
T ss_pred ------cceEEECCcccceEEEEEEEECCEECCCcEeEEEEcCEEEEEeCCCCeEEEEeCCC
Confidence 234445553 233333332 256777778888777999999999999999999865
No 129
>PTZ00421 coronin; Provisional
Probab=97.83 E-value=0.0053 Score=59.17 Aligned_cols=160 Identities=13% Similarity=0.090 Sum_probs=94.9
Q ss_pred CceEEEccCC-CeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEEe
Q 018242 36 PESLAFDALG-EGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIAD 114 (359)
Q Consensus 36 p~~i~~~~~G-~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~~ 114 (359)
-.++++.|++ ++++++..++.|..||..+++... .+.........+++++ ++.++++.
T Consensus 128 V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~--------------------~l~~h~~~V~sla~sp-dG~lLatg 186 (493)
T PTZ00421 128 VGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVE--------------------VIKCHSDQITSLEWNL-DGSLLCTT 186 (493)
T ss_pred EEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEE--------------------EEcCCCCceEEEEEEC-CCCEEEEe
Confidence 3478899875 567788889999999998763221 1222223467889999 66665554
Q ss_pred CC-CcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCCcE
Q 018242 115 AY-FGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQV 193 (359)
Q Consensus 115 ~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~ 193 (359)
.. +.|..+|+.+++....... . .......+.+.++++ ..++...+ ....+.|..||......
T Consensus 187 s~Dg~IrIwD~rsg~~v~tl~~-H--~~~~~~~~~w~~~~~-~ivt~G~s-------------~s~Dr~VklWDlr~~~~ 249 (493)
T PTZ00421 187 SKDKKLNIIDPRDGTIVSSVEA-H--ASAKSQRCLWAKRKD-LIITLGCS-------------KSQQRQIMLWDTRKMAS 249 (493)
T ss_pred cCCCEEEEEECCCCcEEEEEec-C--CCCcceEEEEcCCCC-eEEEEecC-------------CCCCCeEEEEeCCCCCC
Confidence 44 4588899987764321111 1 111223456777776 44442110 11245688888764321
Q ss_pred --EEEeCC-CCCCceEEEccCCCEEEEEecCCCEEEEEEcCCC
Q 018242 194 --TVLLGN-LSFPNGVALSEDGNYILLAETTSCRILRYWLKTS 233 (359)
Q Consensus 194 --~~~~~~-~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~ 233 (359)
.....+ ........+++|++.+|++...++.|..|++...
T Consensus 250 p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~ 292 (493)
T PTZ00421 250 PYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNE 292 (493)
T ss_pred ceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCC
Confidence 111111 1122234678999988888777889999998654
No 130
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=97.82 E-value=0.0045 Score=56.97 Aligned_cols=221 Identities=12% Similarity=0.101 Sum_probs=126.9
Q ss_pred CCCceEEEccCCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEE
Q 018242 34 IGPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIA 113 (359)
Q Consensus 34 ~~p~~i~~~~~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~ 113 (359)
+.-..++++|..-.=++.+...++..|+..+.+... .+........++.|-. ||+|+.+
T Consensus 27 ~~vssl~fsp~~P~d~aVt~S~rvqly~~~~~~~~k--------------------~~srFk~~v~s~~fR~-DG~Llaa 85 (487)
T KOG0310|consen 27 NSVSSLCFSPKHPYDFAVTSSVRVQLYSSVTRSVRK--------------------TFSRFKDVVYSVDFRS-DGRLLAA 85 (487)
T ss_pred CcceeEecCCCCCCceEEecccEEEEEecchhhhhh--------------------hHHhhccceeEEEeec-CCeEEEc
Confidence 444577777753312333333578888776642211 1112223356777877 8898887
Q ss_pred eCCCc-EEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCCc
Q 018242 114 DAYFG-LLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQ 192 (359)
Q Consensus 114 ~~~~~-i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~ 192 (359)
....| +..||.+++..- ..... ....++-..+.++++.++++- +....+-.+|.++..
T Consensus 86 GD~sG~V~vfD~k~r~iL---R~~~a-h~apv~~~~f~~~d~t~l~s~-----------------sDd~v~k~~d~s~a~ 144 (487)
T KOG0310|consen 86 GDESGHVKVFDMKSRVIL---RQLYA-HQAPVHVTKFSPQDNTMLVSG-----------------SDDKVVKYWDLSTAY 144 (487)
T ss_pred cCCcCcEEEeccccHHHH---HHHhh-ccCceeEEEecccCCeEEEec-----------------CCCceEEEEEcCCcE
Confidence 44434 777886653211 10110 111345567788877566552 223345556776655
Q ss_pred EEE-EeCCCCCCceEEEccCCCEEEEEecCCCEEEEEEcCCCCCcceeEeec-CCCCC-CceEECCCCCEEEEEecCCCc
Q 018242 193 VTV-LLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQ-LPGFP-DNIKRSPRGGFWVGIHSRRKG 269 (359)
Q Consensus 193 ~~~-~~~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~p-~~i~~d~~G~lwv~~~~~~~~ 269 (359)
+.. +..+-....-.++.|...++++++..++.|..||..... ....+ ..+.| ..+.+=+.|.+.++..++...
T Consensus 145 v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~----~~v~elnhg~pVe~vl~lpsgs~iasAgGn~vk 220 (487)
T KOG0310|consen 145 VQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLT----SRVVELNHGCPVESVLALPSGSLIASAGGNSVK 220 (487)
T ss_pred EEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCC----ceeEEecCCCceeeEEEcCCCCEEEEcCCCeEE
Confidence 431 223334456777888777899999999999999975432 11122 23444 566666888888877776533
Q ss_pred cccccccCCccceeeecCCccceeeeeecccccCc
Q 018242 270 ISKLVLSFPWIGNVLIKLPIDIVKIHSSLVKLSGN 304 (359)
Q Consensus 270 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 304 (359)
+|+. ...|+++.......+.++++++..++.
T Consensus 221 VWDl----~~G~qll~~~~~H~KtVTcL~l~s~~~ 251 (487)
T KOG0310|consen 221 VWDL----TTGGQLLTSMFNHNKTVTCLRLASDST 251 (487)
T ss_pred EEEe----cCCceehhhhhcccceEEEEEeecCCc
Confidence 2222 235677766665667888888776543
No 131
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=97.81 E-value=0.00022 Score=51.15 Aligned_cols=58 Identities=17% Similarity=0.338 Sum_probs=42.6
Q ss_pred EEEEecCCCeEEEEeCC------------------CcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeC
Q 018242 100 GLCFNKTNGDLYIADAY------------------FGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDS 161 (359)
Q Consensus 100 gi~~~~~~g~l~v~~~~------------------~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~ 161 (359)
++.+++++|.+|+++.. +++.++|+.+++.+.+.. ...+||++++++|+.++.|++.
T Consensus 2 dldv~~~~g~vYfTdsS~~~~~~~~~~~~le~~~~GRll~ydp~t~~~~vl~~-----~L~fpNGVals~d~~~vlv~Et 76 (89)
T PF03088_consen 2 DLDVDQDTGTVYFTDSSSRYDRRDWVYDLLEGRPTGRLLRYDPSTKETTVLLD-----GLYFPNGVALSPDESFVLVAET 76 (89)
T ss_dssp EEEE-TTT--EEEEES-SS--TTGHHHHHHHT---EEEEEEETTTTEEEEEEE-----EESSEEEEEE-TTSSEEEEEEG
T ss_pred ceeEecCCCEEEEEeCccccCccceeeeeecCCCCcCEEEEECCCCeEEEehh-----CCCccCeEEEcCCCCEEEEEec
Confidence 56778745999998731 249999999999887766 3568999999999998999854
Q ss_pred C
Q 018242 162 S 162 (359)
Q Consensus 162 ~ 162 (359)
.
T Consensus 77 ~ 77 (89)
T PF03088_consen 77 G 77 (89)
T ss_dssp G
T ss_pred c
Confidence 3
No 132
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=97.80 E-value=0.00066 Score=62.24 Aligned_cols=187 Identities=12% Similarity=0.161 Sum_probs=115.1
Q ss_pred CCceEEEcc-CCCeeEEecCCCEEEEEEcCCc--ceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEE
Q 018242 35 GPESLAFDA-LGEGPYTGVSDGRIIKWHQDQR--RWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLY 111 (359)
Q Consensus 35 ~p~~i~~~~-~G~~l~~~~~~~~i~~~d~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~ 111 (359)
+-.++.+-| .|.++..+..++.|+.||.-.. -+++| .........++++. +|.-|
T Consensus 216 gvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf---------------------~gH~k~Vrd~~~s~-~g~~f 273 (503)
T KOG0282|consen 216 GVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTF---------------------KGHRKPVRDASFNN-CGTSF 273 (503)
T ss_pred ccchhhhccceeeEEEecCCCceEEEEEEecCcceehhh---------------------hcchhhhhhhhccc-cCCee
Confidence 344555666 6887778889999999987542 12222 12212235677777 55555
Q ss_pred EEeCCC-cEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCC
Q 018242 112 IADAYF-GLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPAT 190 (359)
Q Consensus 112 v~~~~~-~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~ 190 (359)
.+...+ -|-.+|.++|++...... ...|..+.+.|++..++++ +...+.|..||..+
T Consensus 274 LS~sfD~~lKlwDtETG~~~~~f~~-----~~~~~cvkf~pd~~n~fl~-----------------G~sd~ki~~wDiRs 331 (503)
T KOG0282|consen 274 LSASFDRFLKLWDTETGQVLSRFHL-----DKVPTCVKFHPDNQNIFLV-----------------GGSDKKIRQWDIRS 331 (503)
T ss_pred eeeecceeeeeeccccceEEEEEec-----CCCceeeecCCCCCcEEEE-----------------ecCCCcEEEEeccc
Confidence 554444 477789999987654331 1246678888888338887 23457899999987
Q ss_pred CcEEE-EeCCCCCCceEEEccCCCEEEEEecCCCEEEEEEcCCCCCcceeEeecCCCCCCceEECCCCCEEEEEecCC
Q 018242 191 KQVTV-LLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGGFWVGIHSRR 267 (359)
Q Consensus 191 ~~~~~-~~~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lwv~~~~~~ 267 (359)
+++.. +..++...+.|.|-++|+ -+++.++...+..|+...+...+..........| .+...|+|..+++.....
T Consensus 332 ~kvvqeYd~hLg~i~~i~F~~~g~-rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP-~~~~~P~~~~~~aQs~dN 407 (503)
T KOG0282|consen 332 GKVVQEYDRHLGAILDITFVDEGR-RFISSSDDKSVRIWENRIPVPIKNIADPEMHTMP-CLTLHPNGKWFAAQSMDN 407 (503)
T ss_pred hHHHHHHHhhhhheeeeEEccCCc-eEeeeccCccEEEEEcCCCccchhhcchhhccCc-ceecCCCCCeehhhccCc
Confidence 76432 234456678899988887 6888889899999986544222222222222222 355566665555554433
No 133
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=97.79 E-value=0.0017 Score=63.40 Aligned_cols=190 Identities=17% Similarity=0.205 Sum_probs=115.7
Q ss_pred CCCceEEEccCCCeeEEecCCCEEEEEEcCCcceE-EEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEE
Q 018242 34 IGPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWL-HFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYI 112 (359)
Q Consensus 34 ~~p~~i~~~~~G~~l~~~~~~~~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v 112 (359)
....++++++=|+..+++...|.|-++|.+.+-.+ .|.+. ........|++.|. -+++.|
T Consensus 449 ~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~------------------~ah~~~V~gla~D~-~n~~~v 509 (910)
T KOG1539|consen 449 INATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDS------------------PAHKGEVTGLAVDG-TNRLLV 509 (910)
T ss_pred cceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccC------------------ccccCceeEEEecC-CCceEE
Confidence 45567888888998899999999999999876321 22111 12234568999998 667777
Q ss_pred EeCCCcEE-EEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCC
Q 018242 113 ADAYFGLL-KVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATK 191 (359)
Q Consensus 113 ~~~~~~i~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~ 191 (359)
+....|+. .++.+++....-... + ..+..+.-..... +++... . .-.|..+|..+.
T Consensus 510 sa~~~Gilkfw~f~~k~l~~~l~l--~---~~~~~iv~hr~s~-l~a~~~----------------d-df~I~vvD~~t~ 566 (910)
T KOG1539|consen 510 SAGADGILKFWDFKKKVLKKSLRL--G---SSITGIVYHRVSD-LLAIAL----------------D-DFSIRVVDVVTR 566 (910)
T ss_pred EccCcceEEEEecCCcceeeeecc--C---CCcceeeeeehhh-hhhhhc----------------C-ceeEEEEEchhh
Confidence 65566755 456665542211110 0 1222333332222 222210 1 125888888765
Q ss_pred cEE-EEeCCCCCCceEEEccCCCEEEEEecCCCEEEEEEcCCCCCcceeEeecCCCCCCceEECCCCCEEEEEecCCCc
Q 018242 192 QVT-VLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGGFWVGIHSRRKG 269 (359)
Q Consensus 192 ~~~-~~~~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lwv~~~~~~~~ 269 (359)
++. .+.+.....+.++|+|||++|..+. .++.|..||+.....-+. + .+...+-++.++|.|.+..+++.+...
T Consensus 567 kvvR~f~gh~nritd~~FS~DgrWlisas-mD~tIr~wDlpt~~lID~--~-~vd~~~~sls~SPngD~LAT~Hvd~~g 641 (910)
T KOG1539|consen 567 KVVREFWGHGNRITDMTFSPDGRWLISAS-MDSTIRTWDLPTGTLIDG--L-LVDSPCTSLSFSPNGDFLATVHVDQNG 641 (910)
T ss_pred hhhHHhhccccceeeeEeCCCCcEEEEee-cCCcEEEEeccCcceeee--E-ecCCcceeeEECCCCCEEEEEEecCce
Confidence 543 3345566778999999999877765 557999999865432211 1 123334678888999888777766544
No 134
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=97.78 E-value=0.04 Score=53.33 Aligned_cols=128 Identities=13% Similarity=0.118 Sum_probs=67.0
Q ss_pred CCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEEeCCCcEEEEe
Q 018242 44 LGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIADAYFGLLKVG 123 (359)
Q Consensus 44 ~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~~~~~~i~~~~ 123 (359)
+|+ +|+...++.|+.+|..+++...-...... .. + ..... ...++++.. ++.+|+++..+.|+.+|
T Consensus 61 ~g~-vy~~~~~g~l~AlD~~tG~~~W~~~~~~~-~~---~------~~~~~--~~~g~~~~~-~~~V~v~~~~g~v~AlD 126 (488)
T cd00216 61 DGD-MYFTTSHSALFALDAATGKVLWRYDPKLP-AD---R------GCCDV--VNRGVAYWD-PRKVFFGTFDGRLVALD 126 (488)
T ss_pred CCE-EEEeCCCCcEEEEECCCChhhceeCCCCC-cc---c------ccccc--ccCCcEEcc-CCeEEEecCCCeEEEEE
Confidence 566 88888889999999988753321110000 00 0 00000 012333332 38999988766799999
Q ss_pred CCCCeEEEEeecCCCc--cccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCCcEEEE
Q 018242 124 PEGGLATAVATQSEGI--PFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQVTVL 196 (359)
Q Consensus 124 ~~~~~~~~~~~~~~~~--~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~ 196 (359)
.++|+..-........ ....-....+. ++. +|++.....+. .....+.|+.+|.++|+....
T Consensus 127 ~~TG~~~W~~~~~~~~~~~~~i~ssP~v~-~~~-v~vg~~~~~~~---------~~~~~g~v~alD~~TG~~~W~ 190 (488)
T cd00216 127 AETGKQVWKFGNNDQVPPGYTMTGAPTIV-KKL-VIIGSSGAEFF---------ACGVRGALRAYDVETGKLLWR 190 (488)
T ss_pred CCCCCEeeeecCCCCcCcceEecCCCEEE-CCE-EEEeccccccc---------cCCCCcEEEEEECCCCceeeE
Confidence 9998865332211110 00001122333 255 77764321110 012246799999998887654
No 135
>PTZ00420 coronin; Provisional
Probab=97.76 E-value=0.049 Score=53.29 Aligned_cols=120 Identities=9% Similarity=0.013 Sum_probs=72.7
Q ss_pred CCcceEEEEecCCCeEEEE-eCCCcEEEEeCCCCe--EEEEee---cCCCccccccceEEEeCCCCEEEEEeCCCccccc
Q 018242 95 CGRPLGLCFNKTNGDLYIA-DAYFGLLKVGPEGGL--ATAVAT---QSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRR 168 (359)
Q Consensus 95 ~~~p~gi~~~~~~g~l~v~-~~~~~i~~~~~~~~~--~~~~~~---~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~ 168 (359)
......+++++.+++++++ ...+.|..++..++. ...+.. ...+ ....+..++++|++..+.++-
T Consensus 74 ~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~g-H~~~V~sVaf~P~g~~iLaSg-------- 144 (568)
T PTZ00420 74 TSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKG-HKKKISIIDWNPMNYYIMCSS-------- 144 (568)
T ss_pred CCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeec-CCCcEEEEEECCCCCeEEEEE--------
Confidence 3456789999854565555 433457778876432 111000 0111 123577899999987344441
Q ss_pred cceeeeeecCCCceEEEEeCCCCcEEEEeCCCCCCceEEEccCCCEEEEEecCCCEEEEEEcCCC
Q 018242 169 NHISVILSGDKTGRLMKYDPATKQVTVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTS 233 (359)
Q Consensus 169 ~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~ 233 (359)
+..+.|..||..+++.............++|+++|+. +++...++.|..||+...
T Consensus 145 ---------S~DgtIrIWDl~tg~~~~~i~~~~~V~SlswspdG~l-Lat~s~D~~IrIwD~Rsg 199 (568)
T PTZ00420 145 ---------GFDSFVNIWDIENEKRAFQINMPKKLSSLKWNIKGNL-LSGTCVGKHMHIIDPRKQ 199 (568)
T ss_pred ---------eCCCeEEEEECCCCcEEEEEecCCcEEEEEECCCCCE-EEEEecCCEEEEEECCCC
Confidence 2356788899887654332222234678999999984 555556789999998654
No 136
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=97.75 E-value=0.0068 Score=55.82 Aligned_cols=205 Identities=14% Similarity=0.085 Sum_probs=120.8
Q ss_pred CCceEEEccCCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEEe
Q 018242 35 GPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIAD 114 (359)
Q Consensus 35 ~p~~i~~~~~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~~ 114 (359)
...++.|-+||+++.++...|.|..+|.++.... ..+.......+-+.|.++++.+++..
T Consensus 70 ~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iL--------------------R~~~ah~apv~~~~f~~~d~t~l~s~ 129 (487)
T KOG0310|consen 70 VVYSVDFRSDGRLLAAGDESGHVKVFDMKSRVIL--------------------RQLYAHQAPVHVTKFSPQDNTMLVSG 129 (487)
T ss_pred ceeEEEeecCCeEEEccCCcCcEEEeccccHHHH--------------------HHHhhccCceeEEEecccCCeEEEec
Confidence 5668888899997778888899999996553100 01222223345677889889988876
Q ss_pred CCCcEE-EEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCCcE
Q 018242 115 AYFGLL-KVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQV 193 (359)
Q Consensus 115 ~~~~i~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~ 193 (359)
..+++. .+|..+..++ ... .+ .-..+....+.|...++.++ ++.+|.|-.||..+...
T Consensus 130 sDd~v~k~~d~s~a~v~-~~l--~~-htDYVR~g~~~~~~~hivvt-----------------GsYDg~vrl~DtR~~~~ 188 (487)
T KOG0310|consen 130 SDDKVVKYWDLSTAYVQ-AEL--SG-HTDYVRCGDISPANDHIVVT-----------------GSYDGKVRLWDTRSLTS 188 (487)
T ss_pred CCCceEEEEEcCCcEEE-EEe--cC-CcceeEeeccccCCCeEEEe-----------------cCCCceEEEEEeccCCc
Confidence 555655 4577777653 211 11 11245566777665558887 45578888899875432
Q ss_pred EEE-eCCCCCCceEEEccCCCEEEEEecCCCEEEEEEcCCC-CCcceeEeecCCCCCCceEECCCC-CEEEEEecCCCcc
Q 018242 194 TVL-LGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTS-KAGTIEIVAQLPGFPDNIKRSPRG-GFWVGIHSRRKGI 270 (359)
Q Consensus 194 ~~~-~~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~-~~~~~~~~~~~~~~p~~i~~d~~G-~lwv~~~~~~~~~ 270 (359)
... ..+....+.+.+-|.|. ++++. .++.+.+||+..+ +.... ..+...-...+.+..++ +|+.+..+.+
T Consensus 189 ~v~elnhg~pVe~vl~lpsgs-~iasA-gGn~vkVWDl~~G~qll~~--~~~H~KtVTcL~l~s~~~rLlS~sLD~~--- 261 (487)
T KOG0310|consen 189 RVVELNHGCPVESVLALPSGS-LIASA-GGNSVKVWDLTTGGQLLTS--MFNHNKTVTCLRLASDSTRLLSGSLDRH--- 261 (487)
T ss_pred eeEEecCCCceeeEEEcCCCC-EEEEc-CCCeEEEEEecCCceehhh--hhcccceEEEEEeecCCceEeecccccc---
Confidence 221 22333345566667765 55554 5678999998743 21110 00001112346665565 5777776655
Q ss_pred ccccccCC-ccceeeecCCcc
Q 018242 271 SKLVLSFP-WIGNVLIKLPID 290 (359)
Q Consensus 271 ~~~~~~~~-~~g~~~~~~~~~ 290 (359)
+.+|+ -+-++...+..+
T Consensus 262 ---VKVfd~t~~Kvv~s~~~~ 279 (487)
T KOG0310|consen 262 ---VKVFDTTNYKVVHSWKYP 279 (487)
T ss_pred ---eEEEEccceEEEEeeecc
Confidence 56665 466777666554
No 137
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=97.74 E-value=0.034 Score=50.78 Aligned_cols=143 Identities=14% Similarity=0.135 Sum_probs=83.5
Q ss_pred cceEEEEecCCCeEEEEeCCCc-EEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeee
Q 018242 97 RPLGLCFNKTNGDLYIADAYFG-LLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVIL 175 (359)
Q Consensus 97 ~p~gi~~~~~~g~l~v~~~~~~-i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~ 175 (359)
..+++...+ .|+.+++....+ ....|..++..-...... ...-.....+++|||. |+.+
T Consensus 305 ~V~~ls~h~-tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~--~s~v~~ts~~fHpDgL-ifgt---------------- 364 (506)
T KOG0289|consen 305 PVTGLSLHP-TGEYLLSASNDGTWAFSDISSGSQLTVVSDE--TSDVEYTSAAFHPDGL-IFGT---------------- 364 (506)
T ss_pred cceeeeecc-CCcEEEEecCCceEEEEEccCCcEEEEEeec--cccceeEEeeEcCCce-EEec----------------
Confidence 346788888 677666654544 555566666532222110 1112355789999998 7777
Q ss_pred ecCCCceEEEEeCCCCcEE-EEeCCCCCCceEEEccCCCEEEEEecCCCEEEEEEcCCCCCcceeEeecCCC-CCCceEE
Q 018242 176 SGDKTGRLMKYDPATKQVT-VLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPG-FPDNIKR 253 (359)
Q Consensus 176 ~~~~~g~v~~~d~~~~~~~-~~~~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~-~p~~i~~ 253 (359)
+...+.|-.||.+.+... .+..+-.....|+|+.+|- .+++..+++.|..||+...+ .++.+..-.. ....+.+
T Consensus 365 -gt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY-~Lat~add~~V~lwDLRKl~--n~kt~~l~~~~~v~s~~f 440 (506)
T KOG0289|consen 365 -GTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGY-WLATAADDGSVKLWDLRKLK--NFKTIQLDEKKEVNSLSF 440 (506)
T ss_pred -cCCCceEEEEEcCCccccccCCCCCCceeEEEeccCce-EEEEEecCCeEEEEEehhhc--ccceeeccccccceeEEE
Confidence 234566777887765422 2222233346899987764 45555666779999986432 2333322111 1456899
Q ss_pred CCCCCEEEEE
Q 018242 254 SPRGGFWVGI 263 (359)
Q Consensus 254 d~~G~lwv~~ 263 (359)
|..|.+.+..
T Consensus 441 D~SGt~L~~~ 450 (506)
T KOG0289|consen 441 DQSGTYLGIA 450 (506)
T ss_pred cCCCCeEEee
Confidence 9999766644
No 138
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=97.68 E-value=0.059 Score=51.86 Aligned_cols=193 Identities=13% Similarity=-0.016 Sum_probs=113.3
Q ss_pred EEeeCCCCCCceEEEccCCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecC
Q 018242 27 QYQIEGAIGPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKT 106 (359)
Q Consensus 27 ~~~~~~~~~p~~i~~~~~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~ 106 (359)
.++-+.-.+-|++++.+.|+ ||....+|.|..||+.+.+-+. ..+..++..+.|++.+.
T Consensus 63 vi~g~~drsIE~L~W~e~~R-LFS~g~sg~i~EwDl~~lk~~~--------------------~~d~~gg~IWsiai~p~ 121 (691)
T KOG2048|consen 63 VIHGPEDRSIESLAWAEGGR-LFSSGLSGSITEWDLHTLKQKY--------------------NIDSNGGAIWSIAINPE 121 (691)
T ss_pred EEecCCCCceeeEEEccCCe-EEeecCCceEEEEecccCceeE--------------------EecCCCcceeEEEeCCc
Confidence 55556667889999997777 9999888999999998763221 33444556788888886
Q ss_pred CCeEEEEeCCCcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEE
Q 018242 107 NGDLYIADAYFGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKY 186 (359)
Q Consensus 107 ~g~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~ 186 (359)
+..+-|+-..+-++.++...++.+.. ..... ....+-.+.++++|.++..+ .-+|.|..+
T Consensus 122 ~~~l~IgcddGvl~~~s~~p~~I~~~-r~l~r-q~sRvLslsw~~~~~~i~~G------------------s~Dg~Iriw 181 (691)
T KOG2048|consen 122 NTILAIGCDDGVLYDFSIGPDKITYK-RSLMR-QKSRVLSLSWNPTGTKIAGG------------------SIDGVIRIW 181 (691)
T ss_pred cceEEeecCCceEEEEecCCceEEEE-eeccc-ccceEEEEEecCCccEEEec------------------ccCceEEEE
Confidence 67777774333355556555655432 11111 12355678888998755554 224557778
Q ss_pred eCCCCcEEEEe----CCCCC-----CceEEEccCCCEEEEEecCCCEEEEEEcCCCCCcceeEeecCCCCCCceEECCCC
Q 018242 187 DPATKQVTVLL----GNLSF-----PNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRG 257 (359)
Q Consensus 187 d~~~~~~~~~~----~~~~~-----p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G 257 (359)
|..++....+. .+... ..++.+-.|+ .+++.-..+.|.-||.....+. +.+.-..+-.-.+++++++
T Consensus 182 d~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~--tI~sgDS~G~V~FWd~~~gTLi--qS~~~h~adVl~Lav~~~~ 257 (691)
T KOG2048|consen 182 DVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDS--TIASGDSAGTVTFWDSIFGTLI--QSHSCHDADVLALAVADNE 257 (691)
T ss_pred EcCCCceEEEeeecccccccCCceEEEEEEEeecC--cEEEecCCceEEEEcccCcchh--hhhhhhhcceeEEEEcCCC
Confidence 87765443311 11111 2355555666 4566556689999986433221 1111111223347777765
Q ss_pred C-EEEEEe
Q 018242 258 G-FWVGIH 264 (359)
Q Consensus 258 ~-lwv~~~ 264 (359)
+ ++.+.-
T Consensus 258 d~vfsaGv 265 (691)
T KOG2048|consen 258 DRVFSAGV 265 (691)
T ss_pred CeEEEccC
Confidence 4 444443
No 139
>TIGR03032 conserved hypothetical protein TIGR03032. This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.
Probab=97.64 E-value=0.04 Score=48.86 Aligned_cols=214 Identities=18% Similarity=0.166 Sum_probs=116.4
Q ss_pred EEeeCCCCCCceEEEccCCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecC
Q 018242 27 QYQIEGAIGPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKT 106 (359)
Q Consensus 27 ~~~~~~~~~p~~i~~~~~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~ 106 (359)
.+..-.+..|=+++..++ .+|+++.. .|+++-...+-.... +.....+.+==|.. ......-..+-|++ .
T Consensus 42 ~~~~r~F~r~MGl~~~~~--~l~~~t~~-qiw~f~~~~n~l~~~-~~~~~~D~~yvPr~----~~~TGdidiHdia~-~- 111 (335)
T TIGR03032 42 DVFERTFPRPMGLAVSPQ--SLTLGTRY-QLWRFANVDNLLPAG-QTHPGYDRLYVPRA----SYVTGDIDAHDLAL-G- 111 (335)
T ss_pred EEEeeccCccceeeeeCC--eEEEEEcc-eeEEccccccccccc-ccCCCCCeEEeeee----eeeccCcchhheee-c-
Confidence 444445667778877554 38888874 577772211100000 00000000000000 00111123456778 3
Q ss_pred CCeEEEEeC-CCcEEEEeCCCCeEEEEee----cCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCc
Q 018242 107 NGDLYIADA-YFGLLKVGPEGGLATAVAT----QSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTG 181 (359)
Q Consensus 107 ~g~l~v~~~-~~~i~~~~~~~~~~~~~~~----~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g 181 (359)
++.+|+.+. .+.|..+++.-.-+....+ ......--..|+++.. +|+--||+-.+..-....|. +....|
T Consensus 112 ~~~l~fVNT~fSCLatl~~~~SF~P~WkPpFIs~la~eDRCHLNGlA~~-~g~p~yVTa~~~sD~~~gWR----~~~~~g 186 (335)
T TIGR03032 112 AGRLLFVNTLFSCLATVSPDYSFVPLWKPPFISKLAPEDRCHLNGMALD-DGEPRYVTALSQSDVADGWR----EGRRDG 186 (335)
T ss_pred CCcEEEEECcceeEEEECCCCccccccCCccccccCccCceeecceeee-CCeEEEEEEeeccCCccccc----ccccCC
Confidence 667776654 4678888876432211111 1111112356888885 45558887433211111111 222334
Q ss_pred eEEEEeCCCCcEEEEeCCCCCCceEEEccCCCEEEEEecCCCEEEEEEcCCCCCcceeEeecCCCCCCceEECCCCCEE-
Q 018242 182 RLMKYDPATKQVTVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGGFW- 260 (359)
Q Consensus 182 ~v~~~d~~~~~~~~~~~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lw- 260 (359)
++. +|..+++ .+..++..|.+.-+. +|+ ||+.++..+.+.++|.+. +..+.+..++++|.|+.+. |++.
T Consensus 187 G~v-idv~s~e--vl~~GLsmPhSPRWh-dgr-LwvldsgtGev~~vD~~~---G~~e~Va~vpG~~rGL~f~--G~llv 256 (335)
T TIGR03032 187 GCV-IDIPSGE--VVASGLSMPHSPRWY-QGK-LWLLNSGRGELGYVDPQA---GKFQPVAFLPGFTRGLAFA--GDFAF 256 (335)
T ss_pred eEE-EEeCCCC--EEEcCccCCcCCcEe-CCe-EEEEECCCCEEEEEcCCC---CcEEEEEECCCCCccccee--CCEEE
Confidence 443 6666664 355777888877775 565 999999999999998643 4567777789999999997 7755
Q ss_pred EEEec
Q 018242 261 VGIHS 265 (359)
Q Consensus 261 v~~~~ 265 (359)
|+...
T Consensus 257 VgmSk 261 (335)
T TIGR03032 257 VGLSK 261 (335)
T ss_pred EEecc
Confidence 55544
No 140
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=97.63 E-value=0.013 Score=54.34 Aligned_cols=189 Identities=13% Similarity=0.113 Sum_probs=112.2
Q ss_pred EEeeCCCCCCceEEEccCCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecC
Q 018242 27 QYQIEGAIGPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKT 106 (359)
Q Consensus 27 ~~~~~~~~~p~~i~~~~~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~ 106 (359)
.+-+|+..+|-.......+. +++++..+.|..=+.+++ +... ......+..|++..|
T Consensus 322 ~~elPe~~G~iRtv~e~~~d-i~vGTtrN~iL~Gt~~~~-f~~~--------------------v~gh~delwgla~hp- 378 (626)
T KOG2106|consen 322 ETELPEQFGPIRTVAEGKGD-ILVGTTRNFILQGTLENG-FTLT--------------------VQGHGDELWGLATHP- 378 (626)
T ss_pred cccCchhcCCeeEEecCCCc-EEEeeccceEEEeeecCC-ceEE--------------------EEecccceeeEEcCC-
Confidence 33444444444333334455 888888888876665543 3221 112223578999999
Q ss_pred CCeEEEEeCCCc-EEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEE
Q 018242 107 NGDLYIADAYFG-LLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMK 185 (359)
Q Consensus 107 ~g~l~v~~~~~~-i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~ 185 (359)
..+++++..+.+ +..++-+.-.++.... .....+.++|.|. +-++ ...|..++
T Consensus 379 s~~q~~T~gqdk~v~lW~~~k~~wt~~~~-------d~~~~~~fhpsg~-va~G------------------t~~G~w~V 432 (626)
T KOG2106|consen 379 SKNQLLTCGQDKHVRLWNDHKLEWTKIIE-------DPAECADFHPSGV-VAVG------------------TATGRWFV 432 (626)
T ss_pred ChhheeeccCcceEEEccCCceeEEEEec-------CceeEeeccCcce-EEEe------------------eccceEEE
Confidence 667777655554 5555622111221111 1234678889984 7666 34577888
Q ss_pred EeCCCCcEEEEeCCCCCCceEEEccCCCEEEEEecCCCEEEEEEcCCCCCcceeEeecC-CCCCCceEECCCCCEEEEEe
Q 018242 186 YDPATKQVTVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQL-PGFPDNIKRSPRGGFWVGIH 264 (359)
Q Consensus 186 ~d~~~~~~~~~~~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~-~~~p~~i~~d~~G~lwv~~~ 264 (359)
+|.++..+..+......-+.++++|||..+-+ .+-++.|+.|.++.++.. +...... .....-+.++.|++..++..
T Consensus 433 ~d~e~~~lv~~~~d~~~ls~v~ysp~G~~lAv-gs~d~~iyiy~Vs~~g~~-y~r~~k~~gs~ithLDwS~Ds~~~~~~S 510 (626)
T KOG2106|consen 433 LDTETQDLVTIHTDNEQLSVVRYSPDGAFLAV-GSHDNHIYIYRVSANGRK-YSRVGKCSGSPITHLDWSSDSQFLVSNS 510 (626)
T ss_pred EecccceeEEEEecCCceEEEEEcCCCCEEEE-ecCCCeEEEEEECCCCcE-EEEeeeecCceeEEeeecCCCceEEecc
Confidence 99887666666666555678999999986544 567789999988765322 2222221 22234577778887777665
Q ss_pred cC
Q 018242 265 SR 266 (359)
Q Consensus 265 ~~ 266 (359)
.+
T Consensus 511 ~d 512 (626)
T KOG2106|consen 511 GD 512 (626)
T ss_pred Cc
Confidence 43
No 141
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=97.62 E-value=0.0072 Score=50.77 Aligned_cols=120 Identities=11% Similarity=0.125 Sum_probs=74.2
Q ss_pred cEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCCcEEEEe
Q 018242 118 GLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQVTVLL 197 (359)
Q Consensus 118 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~ 197 (359)
.|++++.++..+..+... ....+++++++|+|+++.+... .....|..||.+...+..+.
T Consensus 40 ~l~~~~~~~~~~~~i~l~----~~~~I~~~~WsP~g~~favi~g----------------~~~~~v~lyd~~~~~i~~~~ 99 (194)
T PF08662_consen 40 ELFYLNEKNIPVESIELK----KEGPIHDVAWSPNGNEFAVIYG----------------SMPAKVTLYDVKGKKIFSFG 99 (194)
T ss_pred EEEEEecCCCccceeecc----CCCceEEEEECcCCCEEEEEEc----------------cCCcccEEEcCcccEeEeec
Confidence 477777666554433211 1124789999999996555521 11235777887644433332
Q ss_pred CCCCCCceEEEccCCCEEEEEecC--CCEEEEEEcCCCCCcceeEeec-CCCCCCceEECCCCCEEEEEe
Q 018242 198 GNLSFPNGVALSEDGNYILLAETT--SCRILRYWLKTSKAGTIEIVAQ-LPGFPDNIKRSPRGGFWVGIH 264 (359)
Q Consensus 198 ~~~~~p~gia~~~d~~~l~v~~~~--~~~i~~~~~~~~~~~~~~~~~~-~~~~p~~i~~d~~G~lwv~~~ 264 (359)
....+.+.++|+|+.+.+++.. .+.|..||.... +.+.. .......++++|+|+..++..
T Consensus 100 --~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~-----~~i~~~~~~~~t~~~WsPdGr~~~ta~ 162 (194)
T PF08662_consen 100 --TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKK-----KKISTFEHSDATDVEWSPDGRYLATAT 162 (194)
T ss_pred --CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCC-----EEeeccccCcEEEEEEcCCCCEEEEEE
Confidence 2345789999999988887644 357999997532 22222 122245689999999777554
No 142
>COG2133 Glucose/sorbosone dehydrogenases [Carbohydrate transport and metabolism]
Probab=97.61 E-value=0.016 Score=53.51 Aligned_cols=162 Identities=17% Similarity=0.258 Sum_probs=86.6
Q ss_pred EEEEecCCCeEEEEeCCC--------------cEEEEeCCCCeEEEEeecCC-----CccccccceEEEeCC-CCEEEEE
Q 018242 100 GLCFNKTNGDLYIADAYF--------------GLLKVGPEGGLATAVATQSE-----GIPFRFCNSLDIDQS-TGIIYFT 159 (359)
Q Consensus 100 gi~~~~~~g~l~v~~~~~--------------~i~~~~~~~~~~~~~~~~~~-----~~~~~~~~~l~~d~~-g~~l~v~ 159 (359)
-|+|++ +|+|||+.... .+.+++..+... ...... ...+.++.+++++|. |. ||++
T Consensus 181 ~l~f~p-DG~Lyvs~G~~~~~~~aq~~~~~~Gk~~r~~~a~~~~--~d~p~~~~~i~s~G~RN~qGl~w~P~tg~-Lw~~ 256 (399)
T COG2133 181 RLVFGP-DGKLYVTTGSNGDPALAQDNVSLAGKVLRIDRAGIIP--ADNPFPNSEIWSYGHRNPQGLAWHPVTGA-LWTT 256 (399)
T ss_pred cEEECC-CCcEEEEeCCCCCcccccCccccccceeeeccCcccc--cCCCCCCcceEEeccCCccceeecCCCCc-EEEE
Confidence 589999 78999985322 144444332110 000111 123568889999999 77 9999
Q ss_pred eCCCcccc-ccceeeeeecCCCceEEEE---eCCC-----CcEE--EE-----eCCCCCCceEEEccCC------CEEEE
Q 018242 160 DSSSQFQR-RNHISVILSGDKTGRLMKY---DPAT-----KQVT--VL-----LGNLSFPNGVALSEDG------NYILL 217 (359)
Q Consensus 160 d~~~~~~~-~~~~~~~~~~~~~g~v~~~---d~~~-----~~~~--~~-----~~~~~~p~gia~~~d~------~~l~v 217 (359)
+.+.+..+ .++...+-.+...|--+++ +.++ .... .. ...-..|.|++|.... +.+++
T Consensus 257 e~g~d~~~~~Deln~i~~G~nYGWP~~~~G~~~~g~~~~~~~~~~~~~~p~~~~~~h~ApsGmaFy~G~~fP~~r~~lfV 336 (399)
T COG2133 257 EHGPDALRGPDELNSIRPGKNYGWPYAYFGQNYDGRAIPDGTVVAGAIQPVYTWAPHIAPSGMAFYTGDLFPAYRGDLFV 336 (399)
T ss_pred ecCCCcccCcccccccccCCccCCceeccCcccCccccCCCcccccccCCceeeccccccceeEEecCCcCccccCcEEE
Confidence 98764321 1111111111222221111 0000 0000 00 1112346899998431 34899
Q ss_pred EecCCCEEEEEEcCCCCCcceeEeec--CCCCCCceEECCCCCEEEEEec
Q 018242 218 AETTSCRILRYWLKTSKAGTIEIVAQ--LPGFPDNIKRSPRGGFWVGIHS 265 (359)
Q Consensus 218 ~~~~~~~i~~~~~~~~~~~~~~~~~~--~~~~p~~i~~d~~G~lwv~~~~ 265 (359)
+...+-.+.+.+.+++..-..+.+.. ..+.|.++++.+||.|++++..
T Consensus 337 ~~hgsw~~~~~~~~g~~~~~~~~fl~~d~~gR~~dV~v~~DGallv~~D~ 386 (399)
T COG2133 337 GAHGSWPVLRLRPDGNYKVVLTGFLSGDLGGRPRDVAVAPDGALLVLTDQ 386 (399)
T ss_pred EeecceeEEEeccCCCcceEEEEEEecCCCCcccceEECCCCeEEEeecC
Confidence 98877667776554431111222222 4478999999999999998865
No 143
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=97.60 E-value=0.041 Score=47.95 Aligned_cols=188 Identities=15% Similarity=0.137 Sum_probs=108.1
Q ss_pred ceEEEccCCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEEeCC
Q 018242 37 ESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIADAY 116 (359)
Q Consensus 37 ~~i~~~~~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~~~~ 116 (359)
..+.|+|+|..+..+..+..|+.|+..+.. +-+. ......+...++-+.+++..++-+...
T Consensus 51 ~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdc-eN~~------------------~lkgHsgAVM~l~~~~d~s~i~S~gtD 111 (338)
T KOG0265|consen 51 YTIKFHPDGSCFASGGSDRAIVLWNVYGDC-ENFW------------------VLKGHSGAVMELHGMRDGSHILSCGTD 111 (338)
T ss_pred EEEEECCCCCeEeecCCcceEEEEeccccc-ccee------------------eeccccceeEeeeeccCCCEEEEecCC
Confidence 467899999966777888999999965431 1110 223344567788888855666666656
Q ss_pred CcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCCcEEEE
Q 018242 117 FGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQVTVL 196 (359)
Q Consensus 117 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~ 196 (359)
..++.+|.++|+...-.. . ....+|.+.....|- ..|+. ++..+.+-.+|..++.....
T Consensus 112 k~v~~wD~~tG~~~rk~k-~---h~~~vNs~~p~rrg~-~lv~S----------------gsdD~t~kl~D~R~k~~~~t 170 (338)
T KOG0265|consen 112 KTVRGWDAETGKRIRKHK-G---HTSFVNSLDPSRRGP-QLVCS----------------GSDDGTLKLWDIRKKEAIKT 170 (338)
T ss_pred ceEEEEecccceeeehhc-c---ccceeeecCccccCC-eEEEe----------------cCCCceEEEEeecccchhhc
Confidence 679999999987543211 1 123566666556666 44442 23456777888764332222
Q ss_pred eCCCCCCceEEEccCCCEEEEEecCCCEEEEEEcCCCCCcceeEeecCCCCCCceEECCCCCEEEEEecCC
Q 018242 197 LGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGGFWVGIHSRR 267 (359)
Q Consensus 197 ~~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lwv~~~~~~ 267 (359)
.........++|..++... .+.--++.|..||+..+.... ..........+|...++|....+..+..
T Consensus 171 ~~~kyqltAv~f~d~s~qv-~sggIdn~ikvWd~r~~d~~~--~lsGh~DtIt~lsls~~gs~llsnsMd~ 238 (338)
T KOG0265|consen 171 FENKYQLTAVGFKDTSDQV-ISGGIDNDIKVWDLRKNDGLY--TLSGHADTITGLSLSRYGSFLLSNSMDN 238 (338)
T ss_pred cccceeEEEEEecccccce-eeccccCceeeeccccCcceE--EeecccCceeeEEeccCCCccccccccc
Confidence 1111223456666555544 444456788999875432110 0111112235677777777666655544
No 144
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=97.60 E-value=0.038 Score=47.48 Aligned_cols=190 Identities=12% Similarity=0.047 Sum_probs=114.1
Q ss_pred eEEEccCCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEEeCCC
Q 018242 38 SLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIADAYF 117 (359)
Q Consensus 38 ~i~~~~~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~~~~~ 117 (359)
.|-...+|.+||.+.-+.....|=...++..- ......+..+.+.+|.+...+..+...+
T Consensus 15 qiKyN~eGDLlFscaKD~~~~vw~s~nGerlG--------------------ty~GHtGavW~~Did~~s~~liTGSAD~ 74 (327)
T KOG0643|consen 15 QIKYNREGDLLFSCAKDSTPTVWYSLNGERLG--------------------TYDGHTGAVWCCDIDWDSKHLITGSADQ 74 (327)
T ss_pred eEEecCCCcEEEEecCCCCceEEEecCCceee--------------------eecCCCceEEEEEecCCcceeeeccccc
Confidence 57788899989988888766666543332110 2234446677888888555555555555
Q ss_pred cEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCC-------
Q 018242 118 GLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPAT------- 190 (359)
Q Consensus 118 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~------- 190 (359)
.+..+|.++|+........ ..+..+-++.+|+.+.++.... ....+.|..++...
T Consensus 75 t~kLWDv~tGk~la~~k~~-----~~Vk~~~F~~~gn~~l~~tD~~-------------mg~~~~v~~fdi~~~~~~~~s 136 (327)
T KOG0643|consen 75 TAKLWDVETGKQLATWKTN-----SPVKRVDFSFGGNLILASTDKQ-------------MGYTCFVSVFDIRDDSSDIDS 136 (327)
T ss_pred eeEEEEcCCCcEEEEeecC-----CeeEEEeeccCCcEEEEEehhh-------------cCcceEEEEEEccCChhhhcc
Confidence 6888999999864333211 2345678899999433332111 12334566666541
Q ss_pred Cc-EEEEeCCCCCCceEEEccCCCEEEEEecCCCEEEEEEcCCCCCcceeEeecCCCCCCceEECCCCCEEEEEecCC
Q 018242 191 KQ-VTVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGGFWVGIHSRR 267 (359)
Q Consensus 191 ~~-~~~~~~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lwv~~~~~~ 267 (359)
.+ +..+...-..+....+++-++ .+++.-.++.|.+||+..+... .+.-.......++|.+.++...+++.....
T Consensus 137 ~ep~~kI~t~~skit~a~Wg~l~~-~ii~Ghe~G~is~~da~~g~~~-v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dt 212 (327)
T KOG0643|consen 137 EEPYLKIPTPDSKITSALWGPLGE-TIIAGHEDGSISIYDARTGKEL-VDSDEEHSSKINDLQFSRDRTYFITGSKDT 212 (327)
T ss_pred cCceEEecCCccceeeeeecccCC-EEEEecCCCcEEEEEcccCcee-eechhhhccccccccccCCcceEEecccCc
Confidence 22 222333335566777888888 4666778899999997654110 011011223467899999999888665543
No 145
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=97.59 E-value=0.0014 Score=63.99 Aligned_cols=150 Identities=13% Similarity=0.094 Sum_probs=101.0
Q ss_pred ceEEEccCCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEEeCC
Q 018242 37 ESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIADAY 116 (359)
Q Consensus 37 ~~i~~~~~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~~~~ 116 (359)
.+++.|.-++.+..+..+|-+..||.++..+.. . ......+.++......+-+.++...
T Consensus 497 ~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~--------------------~-l~l~~~~~~iv~hr~s~l~a~~~dd 555 (910)
T KOG1539|consen 497 TGLAVDGTNRLLVSAGADGILKFWDFKKKVLKK--------------------S-LRLGSSITGIVYHRVSDLLAIALDD 555 (910)
T ss_pred eEEEecCCCceEEEccCcceEEEEecCCcceee--------------------e-eccCCCcceeeeeehhhhhhhhcCc
Confidence 389999999977888888888899988763221 1 1222335567666633444444334
Q ss_pred CcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCCcEEEE
Q 018242 117 FGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQVTVL 196 (359)
Q Consensus 117 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~ 196 (359)
-.|..+|..+.++.+.. .+ ....++++.++|||++|..+ ..++.|..||..++.+.-.
T Consensus 556 f~I~vvD~~t~kvvR~f---~g-h~nritd~~FS~DgrWlisa------------------smD~tIr~wDlpt~~lID~ 613 (910)
T KOG1539|consen 556 FSIRVVDVVTRKVVREF---WG-HGNRITDMTFSPDGRWLISA------------------SMDSTIRTWDLPTGTLIDG 613 (910)
T ss_pred eeEEEEEchhhhhhHHh---hc-cccceeeeEeCCCCcEEEEe------------------ecCCcEEEEeccCcceeee
Confidence 47899998877653211 11 12468899999999944444 3356799999887765432
Q ss_pred eCCCCCCceEEEccCCCEEEEEecCCCEEEEEE
Q 018242 197 LGNLSFPNGVALSEDGNYILLAETTSCRILRYW 229 (359)
Q Consensus 197 ~~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~ 229 (359)
..-...+..+.++|.|..|..+-.+.++|+.|.
T Consensus 614 ~~vd~~~~sls~SPngD~LAT~Hvd~~gIylWs 646 (910)
T KOG1539|consen 614 LLVDSPCTSLSFSPNGDFLATVHVDQNGIYLWS 646 (910)
T ss_pred EecCCcceeeEECCCCCEEEEEEecCceEEEEE
Confidence 222334578899999999888888889999996
No 146
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.54 E-value=0.048 Score=47.42 Aligned_cols=208 Identities=17% Similarity=0.220 Sum_probs=102.5
Q ss_pred eEEEEecCCCe-EEEEeC-CCcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeee
Q 018242 99 LGLCFNKTNGD-LYIADA-YFGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILS 176 (359)
Q Consensus 99 ~gi~~~~~~g~-l~v~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~ 176 (359)
++|+++|.-.. +.++-. +.-.+.+|+.+++.........+ . .+--.-++++||+.||.++...+
T Consensus 71 Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~-R-HfyGHGvfs~dG~~LYATEndfd------------ 136 (366)
T COG3490 71 HGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEG-R-HFYGHGVFSPDGRLLYATENDFD------------ 136 (366)
T ss_pred CCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccC-c-eeecccccCCCCcEEEeecCCCC------------
Confidence 45666553322 223321 11255677776653322221111 1 12223478999999999854422
Q ss_pred cCCCceEEEEeCCCCcEEE---EeCCCCCCceEEEccCCCEEEEEecCCCEEEEE--------EcCCCCCcceeEe----
Q 018242 177 GDKTGRLMKYDPATKQVTV---LLGNLSFPNGVALSEDGNYILLAETTSCRILRY--------WLKTSKAGTIEIV---- 241 (359)
Q Consensus 177 ~~~~g~v~~~d~~~~~~~~---~~~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~--------~~~~~~~~~~~~~---- 241 (359)
...|-|-.||.. ..+.. +......|..+.+.+||+++.+++ ++|..- +++.-+. ....+
T Consensus 137 -~~rGViGvYd~r-~~fqrvgE~~t~GiGpHev~lm~DGrtlvvan---GGIethpdfgR~~lNldsMeP-Slvlld~at 210 (366)
T COG3490 137 -PNRGVIGVYDAR-EGFQRVGEFSTHGIGPHEVTLMADGRTLVVAN---GGIETHPDFGRTELNLDSMEP-SLVLLDAAT 210 (366)
T ss_pred -CCCceEEEEecc-cccceecccccCCcCcceeEEecCCcEEEEeC---CceecccccCccccchhhcCc-cEEEEeccc
Confidence 223456667765 33333 334556788999999999887775 333332 2221110 01101
Q ss_pred ---ecCCCCC--------CceEECCCCCEEEEEecCCC--ccccccccCCccceeeecCCccceee-------eeecccc
Q 018242 242 ---AQLPGFP--------DNIKRSPRGGFWVGIHSRRK--GISKLVLSFPWIGNVLIKLPIDIVKI-------HSSLVKL 301 (359)
Q Consensus 242 ---~~~~~~p--------~~i~~d~~G~lwv~~~~~~~--~~~~~~~~~~~~g~~~~~~~~~~~~~-------~~~~~~~ 301 (359)
.+...+| +-++.+++|.+|.++.-.+. ..-. ++-.-..|+.++.++.+.+.. .++...
T Consensus 211 G~liekh~Lp~~l~~lSiRHld~g~dgtvwfgcQy~G~~~d~pp-Lvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n- 288 (366)
T COG3490 211 GNLIEKHTLPASLRQLSIRHLDIGRDGTVWFGCQYRGPRNDLPP-LVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAAN- 288 (366)
T ss_pred cchhhhccCchhhhhcceeeeeeCCCCcEEEEEEeeCCCccCCc-ceeeccCCCcCcccCCCHHHHHHHHhhhhheeec-
Confidence 1111123 44788999999998875432 1111 111223556666666653321 111111
Q ss_pred cCcceEEEEECCCCCEEEEEEccCCcee
Q 018242 302 SGNGGMAMRISEQGNVLEILEEIGRKMW 329 (359)
Q Consensus 302 ~~~~~~~~~~~~~g~~~~~~~~~~g~~~ 329 (359)
... ..+..-+|.|+....+....|...
T Consensus 289 ~~~-glV~lTSP~GN~~vi~da~tG~vv 315 (366)
T COG3490 289 RRD-GLVALTSPRGNRAVIWDAATGAVV 315 (366)
T ss_pred ccC-CeEEEecCCCCeEEEEEcCCCcEE
Confidence 111 334444678877766655555443
No 147
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.54 E-value=0.011 Score=51.19 Aligned_cols=161 Identities=14% Similarity=0.107 Sum_probs=82.9
Q ss_pred EccCCCeeEEecCC-----CEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEEeC
Q 018242 41 FDALGEGPYTGVSD-----GRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIADA 115 (359)
Q Consensus 41 ~~~~G~~l~~~~~~-----~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~~~ 115 (359)
+++||++||.+.++ |-|-.||... .+..+. ++....-.|+-+.+.+ ||++.+...
T Consensus 121 fs~dG~~LYATEndfd~~rGViGvYd~r~-~fqrvg------------------E~~t~GiGpHev~lm~-DGrtlvvan 180 (366)
T COG3490 121 FSPDGRLLYATENDFDPNRGVIGVYDARE-GFQRVG------------------EFSTHGIGPHEVTLMA-DGRTLVVAN 180 (366)
T ss_pred cCCCCcEEEeecCCCCCCCceEEEEeccc-ccceec------------------ccccCCcCcceeEEec-CCcEEEEeC
Confidence 55677777766443 5666777652 343332 4455556688888888 555554432
Q ss_pred CC-------------------cEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeee
Q 018242 116 YF-------------------GLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILS 176 (359)
Q Consensus 116 ~~-------------------~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~ 176 (359)
++ .+..++..+|.+..-...........+..+.+++||+ +|++..... .+.++
T Consensus 181 GGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~dgt-vwfgcQy~G-~~~d~------ 252 (366)
T COG3490 181 GGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRDGT-VWFGCQYRG-PRNDL------ 252 (366)
T ss_pred CceecccccCccccchhhcCccEEEEeccccchhhhccCchhhhhcceeeeeeCCCCc-EEEEEEeeC-CCccC------
Confidence 20 1223332233221100001112345678899999999 999954210 00000
Q ss_pred cCCCceEEEEeCCCCcEEEEeCC-------CCCCceEEEccCCCEEEEEecCCCEEEEEEcCCC
Q 018242 177 GDKTGRLMKYDPATKQVTVLLGN-------LSFPNGVALSEDGNYILLAETTSCRILRYWLKTS 233 (359)
Q Consensus 177 ~~~~g~v~~~d~~~~~~~~~~~~-------~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~ 233 (359)
--+.-.-..++.++.+.-. ....-.||...+...+-++....++...||.+.+
T Consensus 253 ----ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~vi~da~tG 312 (366)
T COG3490 253 ----PPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRAVIWDAATG 312 (366)
T ss_pred ----CcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCeEEEEEcCCC
Confidence 0111111222333322110 0123467777666667788888889999997654
No 148
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=97.52 E-value=0.023 Score=50.63 Aligned_cols=159 Identities=11% Similarity=0.146 Sum_probs=96.4
Q ss_pred ceEEEEecCCCeEEEEeCCCc-EEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeee
Q 018242 98 PLGLCFNKTNGDLYIADAYFG-LLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILS 176 (359)
Q Consensus 98 p~gi~~~~~~g~l~v~~~~~~-i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~ 176 (359)
...++++| .++.|++...++ |-.+|..+|+++.-.. + ....+.++++++..-|+|-+
T Consensus 154 Vr~vavdP-~n~wf~tgs~DrtikIwDlatg~Lkltlt---G-hi~~vr~vavS~rHpYlFs~----------------- 211 (460)
T KOG0285|consen 154 VRSVAVDP-GNEWFATGSADRTIKIWDLATGQLKLTLT---G-HIETVRGVAVSKRHPYLFSA----------------- 211 (460)
T ss_pred EEEEeeCC-CceeEEecCCCceeEEEEcccCeEEEeec---c-hhheeeeeeecccCceEEEe-----------------
Confidence 45788998 555555544444 6778999998753222 1 23467889999888744444
Q ss_pred cCCCceEEEEeCCCCcEEE-EeCCCCCCceEEEccCCCEEEEEecCCCEEEEEEcCCCCCcceeEeecCCCCCCce-EEC
Q 018242 177 GDKTGRLMKYDPATKQVTV-LLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNI-KRS 254 (359)
Q Consensus 177 ~~~~g~v~~~d~~~~~~~~-~~~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i-~~d 254 (359)
.....|-+||.+.+++.. +.+++.....+++.|--. ++++...+..+.+||+.... ....+.....-...+ +.-
T Consensus 212 -gedk~VKCwDLe~nkvIR~YhGHlS~V~~L~lhPTld-vl~t~grDst~RvWDiRtr~--~V~~l~GH~~~V~~V~~~~ 287 (460)
T KOG0285|consen 212 -GEDKQVKCWDLEYNKVIRHYHGHLSGVYCLDLHPTLD-VLVTGGRDSTIRVWDIRTRA--SVHVLSGHTNPVASVMCQP 287 (460)
T ss_pred -cCCCeeEEEechhhhhHHHhccccceeEEEeccccce-eEEecCCcceEEEeeecccc--eEEEecCCCCcceeEEeec
Confidence 234568899998766543 456677788888887554 67777788899999975421 111121111111223 333
Q ss_pred CCCCEEEEEecCCCccccccccCC-ccceeeecCC
Q 018242 255 PRGGFWVGIHSRRKGISKLVLSFP-WIGNVLIKLP 288 (359)
Q Consensus 255 ~~G~lwv~~~~~~~~~~~~~~~~~-~~g~~~~~~~ 288 (359)
.++.++.++.++. +..++ ..|+....+.
T Consensus 288 ~dpqvit~S~D~t------vrlWDl~agkt~~tlt 316 (460)
T KOG0285|consen 288 TDPQVITGSHDST------VRLWDLRAGKTMITLT 316 (460)
T ss_pred CCCceEEecCCce------EEEeeeccCceeEeee
Confidence 4678888887765 34443 2455554443
No 149
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=97.48 E-value=0.0057 Score=59.40 Aligned_cols=161 Identities=16% Similarity=0.147 Sum_probs=99.6
Q ss_pred EEeeCCCCCCceEEEccCCCeeEE-ecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEec
Q 018242 27 QYQIEGAIGPESLAFDALGEGPYT-GVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNK 105 (359)
Q Consensus 27 ~~~~~~~~~p~~i~~~~~G~~l~~-~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~ 105 (359)
++..+...--+.+.|.|-|- +|+ +..++.-..|..+...- ...+.........+.|.|
T Consensus 487 V~y~GH~~PVwdV~F~P~Gy-YFatas~D~tArLWs~d~~~P--------------------lRifaghlsDV~cv~FHP 545 (707)
T KOG0263|consen 487 VIYKGHLAPVWDVQFAPRGY-YFATASHDQTARLWSTDHNKP--------------------LRIFAGHLSDVDCVSFHP 545 (707)
T ss_pred EEecCCCcceeeEEecCCce-EEEecCCCceeeeeecccCCc--------------------hhhhcccccccceEEECC
Confidence 45555444445678889987 554 44555555665554310 002223334456788998
Q ss_pred CCCeEEEE-eCCCcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEE
Q 018242 106 TNGDLYIA-DAYFGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLM 184 (359)
Q Consensus 106 ~~g~l~v~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~ 184 (359)
+.+...+ .....+..+|..+|...++.. + ....+..++++|+|+ |++. ++..+.|.
T Consensus 546 -Ns~Y~aTGSsD~tVRlWDv~~G~~VRiF~---G-H~~~V~al~~Sp~Gr--~LaS----------------g~ed~~I~ 602 (707)
T KOG0263|consen 546 -NSNYVATGSSDRTVRLWDVSTGNSVRIFT---G-HKGPVTALAFSPCGR--YLAS----------------GDEDGLIK 602 (707)
T ss_pred -cccccccCCCCceEEEEEcCCCcEEEEec---C-CCCceEEEEEcCCCc--eEee----------------cccCCcEE
Confidence 5554333 223357778888776544432 1 223567899999998 5552 24457788
Q ss_pred EEeCCCCcEE-EEeCCCCCCceEEEccCCCEEEEEecCCCEEEEEEcCC
Q 018242 185 KYDPATKQVT-VLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKT 232 (359)
Q Consensus 185 ~~d~~~~~~~-~~~~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~ 232 (359)
.||..+++.. .+..+......+.|+.||. +++++..++.|..||+..
T Consensus 603 iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~-vLasgg~DnsV~lWD~~~ 650 (707)
T KOG0263|consen 603 IWDLANGSLVKQLKGHTGTIYSLSFSRDGN-VLASGGADNSVRLWDLTK 650 (707)
T ss_pred EEEcCCCcchhhhhcccCceeEEEEecCCC-EEEecCCCCeEEEEEchh
Confidence 9998775543 2333444567899999998 677777889999999753
No 150
>KOG4328 consensus WD40 protein [Function unknown]
Probab=97.48 E-value=0.033 Score=51.21 Aligned_cols=196 Identities=18% Similarity=0.177 Sum_probs=105.1
Q ss_pred CCceEEEccCC--CeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEE
Q 018242 35 GPESLAFDALG--EGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYI 112 (359)
Q Consensus 35 ~p~~i~~~~~G--~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v 112 (359)
...+++|.|.- +++.++.-.|.|..||..+.+ |...+++-+........+|.|.|.+-..++
T Consensus 188 Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~----------------~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ 251 (498)
T KOG4328|consen 188 RITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQE----------------KDKDGVYLFTPHSGPVSGLKFSPANTSQIY 251 (498)
T ss_pred ceEEEEecccCcceEEEEccCCCcEEEEecCCCC----------------CccCceEEeccCCccccceEecCCChhhee
Confidence 44578888864 456677777999999986431 000122233333344568888875544444
Q ss_pred EeCCCc-EEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCC
Q 018242 113 ADAYFG-LLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATK 191 (359)
Q Consensus 113 ~~~~~~-i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~ 191 (359)
+..+.| |...|.+++..+.++.... ......++.+..+...+++++. .|..-.+|..++
T Consensus 252 ssSyDGtiR~~D~~~~i~e~v~s~~~--d~~~fs~~d~~~e~~~vl~~~~------------------~G~f~~iD~R~~ 311 (498)
T KOG4328|consen 252 SSSYDGTIRLQDFEGNISEEVLSLDT--DNIWFSSLDFSAESRSVLFGDN------------------VGNFNVIDLRTD 311 (498)
T ss_pred eeccCceeeeeeecchhhHHHhhcCc--cceeeeeccccCCCccEEEeec------------------ccceEEEEeecC
Confidence 444555 5556787776554433211 1123344455544333555532 233344554433
Q ss_pred cE--EEEeCCCCCCceEEEccCCCEEEEEecCCCEEEEEEcCCCCCcceeEeecCC-C-CCCceEECCCC-CEEEEEecC
Q 018242 192 QV--TVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLP-G-FPDNIKRSPRG-GFWVGIHSR 266 (359)
Q Consensus 192 ~~--~~~~~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~-~-~p~~i~~d~~G-~lwv~~~~~ 266 (359)
.. ..+.-.-....++++.|-..+.+.+.+.+++...||+..-.......+..++ . ..+..+++|.| +|..++.++
T Consensus 312 ~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~ 391 (498)
T KOG4328|consen 312 GSEYENLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDN 391 (498)
T ss_pred CccchhhhhhhcccceeecCCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCC
Confidence 22 2221122356899999988788889889999999998532111101122211 1 23557778854 654444443
No 151
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=97.45 E-value=0.013 Score=52.60 Aligned_cols=179 Identities=16% Similarity=0.095 Sum_probs=94.7
Q ss_pred EEEEEeCCCccccccceeeeeecCCCceEEEEeCCCCcEEEEeCCCCCCceEEEccCCCEEEEEecCC---------CEE
Q 018242 155 IIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQVTVLLGNLSFPNGVALSEDGNYILLAETTS---------CRI 225 (359)
Q Consensus 155 ~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~p~gia~~~d~~~l~v~~~~~---------~~i 225 (359)
++||.|.... ...++++.+|.+++++.-.......++ ++++||++.+|++++.- .-|
T Consensus 4 rvyV~D~~~~-------------~~~~rv~viD~d~~k~lGmi~~g~~~~-~~~spdgk~~y~a~T~~sR~~rG~RtDvv 69 (342)
T PF06433_consen 4 RVYVQDPVFF-------------HMTSRVYVIDADSGKLLGMIDTGFLGN-VALSPDGKTIYVAETFYSRGTRGERTDVV 69 (342)
T ss_dssp EEEEEE-GGG-------------GSSEEEEEEETTTTEEEEEEEEESSEE-EEE-TTSSEEEEEEEEEEETTEEEEEEEE
T ss_pred EEEEECCccc-------------cccceEEEEECCCCcEEEEeecccCCc-eeECCCCCEEEEEEEEEeccccccceeEE
Confidence 4899876421 123689999999887764333333334 67899999999987652 236
Q ss_pred EEEEcCCCCCcceeEeec-C-----CCCCCceEECCCCC-EEEEEecCCCccccccccCCccceeeecCCccce------
Q 018242 226 LRYWLKTSKAGTIEIVAQ-L-----PGFPDNIKRSPRGG-FWVGIHSRRKGISKLVLSFPWIGNVLIKLPIDIV------ 292 (359)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~-~-----~~~p~~i~~d~~G~-lwv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~------ 292 (359)
..||.+.-... .++... . ...++.+.+..+|+ ++|.+..-..++ .+++...++++..+++|..
T Consensus 70 ~~~D~~TL~~~-~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa~SV---tVVDl~~~kvv~ei~~PGC~~iyP~ 145 (342)
T PF06433_consen 70 EIWDTQTLSPT-GEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTPATSV---TVVDLAAKKVVGEIDTPGCWLIYPS 145 (342)
T ss_dssp EEEETTTTEEE-EEEEETTS-B--BS--GGGEEE-TTSSEEEEEEESSSEEE---EEEETTTTEEEEEEEGTSEEEEEEE
T ss_pred EEEecCcCccc-ceEecCCcchheecccccceEEccCCcEEEEEccCCCCeE---EEEECCCCceeeeecCCCEEEEEec
Confidence 66775432111 111111 1 11355678888886 777666543331 3445568888888877643
Q ss_pred ---eeeeecccccCcceEEEEECCCCCEEEEEE---ccCCceeece-EEEEE-eCCEEEEecCCCCeEEEEcC
Q 018242 293 ---KIHSSLVKLSGNGGMAMRISEQGNVLEILE---EIGRKMWRSI-SEVEE-KDGNLWIGSVNMPYAGLYNY 357 (359)
Q Consensus 293 ---~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~---~~~g~~~~~~-~~~~~-~~g~l~ig~~~~~~l~~~~~ 357 (359)
....+|-+ .. -..+.+|.+|+....-. ..+.- +.+ ..... .++++|+-++ +..|.-+++
T Consensus 146 ~~~~F~~lC~D--Gs-l~~v~Ld~~Gk~~~~~t~~F~~~~d--p~f~~~~~~~~~~~~~F~Sy-~G~v~~~dl 212 (342)
T PF06433_consen 146 GNRGFSMLCGD--GS-LLTVTLDADGKEAQKSTKVFDPDDD--PLFEHPAYSRDGGRLYFVSY-EGNVYSADL 212 (342)
T ss_dssp ETTEEEEEETT--SC-EEEEEETSTSSEEEEEEEESSTTTS---B-S--EEETTTTEEEEEBT-TSEEEEEEE
T ss_pred CCCceEEEecC--Cc-eEEEEECCCCCEeEeeccccCCCCc--ccccccceECCCCeEEEEec-CCEEEEEec
Confidence 22222222 22 35567788888753321 11111 111 11222 3567777776 555665554
No 152
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=97.44 E-value=0.096 Score=48.44 Aligned_cols=151 Identities=16% Similarity=0.177 Sum_probs=94.4
Q ss_pred CCCceEEEccCCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEE-
Q 018242 34 IGPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYI- 112 (359)
Q Consensus 34 ~~p~~i~~~~~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v- 112 (359)
+.-.++++..+|.+|.++..+|.+..|+.+++...++. ...+....+.... +|+..+
T Consensus 236 kdVT~L~Wn~~G~~LatG~~~G~~riw~~~G~l~~tl~---------------------~HkgPI~slKWnk-~G~yilS 293 (524)
T KOG0273|consen 236 KDVTSLDWNNDGTLLATGSEDGEARIWNKDGNLISTLG---------------------QHKGPIFSLKWNK-KGTYILS 293 (524)
T ss_pred CCcceEEecCCCCeEEEeecCcEEEEEecCchhhhhhh---------------------ccCCceEEEEEcC-CCCEEEe
Confidence 45669999999999999999999999999886333321 1112234566776 554444
Q ss_pred EeCCCcEEEEeCCCCeEEEEeecCCCcccccc-ceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCce--EEEEeCC
Q 018242 113 ADAYFGLLKVGPEGGLATAVATQSEGIPFRFC-NSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGR--LMKYDPA 189 (359)
Q Consensus 113 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~--v~~~d~~ 189 (359)
+...+.+..+|..++.+.+...... .| -++.+-.+.. |++ ....+. |++++.+
T Consensus 294 ~~vD~ttilwd~~~g~~~q~f~~~s-----~~~lDVdW~~~~~--F~t-----------------s~td~~i~V~kv~~~ 349 (524)
T KOG0273|consen 294 GGVDGTTILWDAHTGTVKQQFEFHS-----APALDVDWQSNDE--FAT-----------------SSTDGCIHVCKVGED 349 (524)
T ss_pred ccCCccEEEEeccCceEEEeeeecc-----CCccceEEecCce--Eee-----------------cCCCceEEEEEecCC
Confidence 4444568889998888765432111 12 2233333332 222 122334 5555544
Q ss_pred CCcEEEEeCCCCCCceEEEccCCCEEEEEecCCCEEEEEEcCC
Q 018242 190 TKQVTVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKT 232 (359)
Q Consensus 190 ~~~~~~~~~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~ 232 (359)
+ -...+.++-...+++.++|.+. |+.+.+.+.++..|....
T Consensus 350 ~-P~~t~~GH~g~V~alk~n~tg~-LLaS~SdD~TlkiWs~~~ 390 (524)
T KOG0273|consen 350 R-PVKTFIGHHGEVNALKWNPTGS-LLASCSDDGTLKIWSMGQ 390 (524)
T ss_pred C-cceeeecccCceEEEEECCCCc-eEEEecCCCeeEeeecCC
Confidence 2 3334444555678999999887 788888999999998654
No 153
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=97.44 E-value=0.041 Score=50.28 Aligned_cols=122 Identities=13% Similarity=0.088 Sum_probs=69.3
Q ss_pred ccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCCcEEEEeCC-C--CCCceEEEccCCCEEEEEe
Q 018242 143 FCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQVTVLLGN-L--SFPNGVALSEDGNYILLAE 219 (359)
Q Consensus 143 ~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~-~--~~p~gia~~~d~~~l~v~~ 219 (359)
.++++...|.|.|+.-++ ..++....|..++........ . -.-...+|.|||. ++.+.
T Consensus 305 ~V~~ls~h~tgeYllsAs------------------~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgL-ifgtg 365 (506)
T KOG0289|consen 305 PVTGLSLHPTGEYLLSAS------------------NDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGL-IFGTG 365 (506)
T ss_pred cceeeeeccCCcEEEEec------------------CCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCce-EEecc
Confidence 456788889998444332 233444455555544333222 1 1235678999995 89999
Q ss_pred cCCCEEEEEEcCCCCCcceeEeecCCCCCCceEECCCCCEEEEEecCCCccccccccCC-ccceeeecCCcc
Q 018242 220 TTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGGFWVGIHSRRKGISKLVLSFP-WIGNVLIKLPID 290 (359)
Q Consensus 220 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~ 290 (359)
+.++.|..||++... ....|....+-...|.|..+|.+.++.-+.+. +..++ ++-+.++.++.+
T Consensus 366 t~d~~vkiwdlks~~--~~a~Fpght~~vk~i~FsENGY~Lat~add~~-----V~lwDLRKl~n~kt~~l~ 430 (506)
T KOG0289|consen 366 TPDGVVKIWDLKSQT--NVAKFPGHTGPVKAISFSENGYWLATAADDGS-----VKLWDLRKLKNFKTIQLD 430 (506)
T ss_pred CCCceEEEEEcCCcc--ccccCCCCCCceeEEEeccCceEEEEEecCCe-----EEEEEehhhcccceeecc
Confidence 999999999986542 11112222233456899888854444444442 44444 344455555443
No 154
>PF05787 DUF839: Bacterial protein of unknown function (DUF839); InterPro: IPR008557 This family consists of bacterial proteins of unknown function.
Probab=97.44 E-value=0.0037 Score=60.51 Aligned_cols=121 Identities=18% Similarity=0.325 Sum_probs=74.4
Q ss_pred CcceEEEEecCCCeEEEEeC-CC-------------------cEEEEeCCCC-------eEEEEeecC------------
Q 018242 96 GRPLGLCFNKTNGDLYIADA-YF-------------------GLLKVGPEGG-------LATAVATQS------------ 136 (359)
Q Consensus 96 ~~p~gi~~~~~~g~l~v~~~-~~-------------------~i~~~~~~~~-------~~~~~~~~~------------ 136 (359)
.+|-++.+++.++.+|++.. .. .|+++++.++ .+..+....
T Consensus 350 ~RpEgi~~~p~~g~vY~a~T~~~~r~~~~~~~~n~~~~n~~G~I~r~~~~~~d~~~~~f~~~~~~~~g~~~~~~~~~~~~ 429 (524)
T PF05787_consen 350 DRPEGITVNPDDGEVYFALTNNSGRGESDVDAANPRAGNGYGQIYRYDPDGNDHAATTFTWELFLVGGDPTDASGNGSNK 429 (524)
T ss_pred cCccCeeEeCCCCEEEEEEecCCCCcccccccCCcccCCcccEEEEecccCCccccceeEEEEEEEecCcccccccccCc
Confidence 45778999998999999842 11 4999988766 333322211
Q ss_pred -CCccccccceEEEeCCCCEEEEEeCCCccccc-------cceeeeeecCCCceEEEEeCCCCcEEEEeCC--CCCCceE
Q 018242 137 -EGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRR-------NHISVILSGDKTGRLMKYDPATKQVTVLLGN--LSFPNGV 206 (359)
Q Consensus 137 -~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~-------~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~--~~~p~gi 206 (359)
....+..|..|+++++|+ |||++.+...... .....+...... .+...++.+++++.+... .....|+
T Consensus 430 ~~~~~f~sPDNL~~d~~G~-LwI~eD~~~~~~~l~g~t~~G~~~~~~~~~G~-~~~~~~~~~g~~~rf~~~P~gaE~tG~ 507 (524)
T PF05787_consen 430 CDDNGFASPDNLAFDPDGN-LWIQEDGGGSNNNLPGVTPDGEVYDFARNDGN-NVWAYDPDTGELKRFLVGPNGAEITGP 507 (524)
T ss_pred ccCCCcCCCCceEECCCCC-EEEEeCCCCCCcccccccccCceeeeeecccc-eeeeccccccceeeeccCCCCcccccc
Confidence 123467899999999999 9999665332110 000000000000 144556777777766533 2345799
Q ss_pred EEccCCCEEEEE
Q 018242 207 ALSEDGNYILLA 218 (359)
Q Consensus 207 a~~~d~~~l~v~ 218 (359)
+|+||+++||+.
T Consensus 508 ~fspDg~tlFvn 519 (524)
T PF05787_consen 508 CFSPDGRTLFVN 519 (524)
T ss_pred eECCCCCEEEEE
Confidence 999999998885
No 155
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=97.42 E-value=0.06 Score=52.90 Aligned_cols=158 Identities=14% Similarity=0.063 Sum_probs=90.3
Q ss_pred EEEEecCCCeEEEEeCCCcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCC
Q 018242 100 GLCFNKTNGDLYIADAYFGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDK 179 (359)
Q Consensus 100 gi~~~~~~g~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~ 179 (359)
.|.+++ ++.|.-+.+...+..+.+...+--.... ...++..+++.|...+.|++ +..
T Consensus 374 DlSWSK-n~fLLSSSMDKTVRLWh~~~~~CL~~F~-----HndfVTcVaFnPvDDryFiS-----------------GSL 430 (712)
T KOG0283|consen 374 DLSWSK-NNFLLSSSMDKTVRLWHPGRKECLKVFS-----HNDFVTCVAFNPVDDRYFIS-----------------GSL 430 (712)
T ss_pred eccccc-CCeeEeccccccEEeecCCCcceeeEEe-----cCCeeEEEEecccCCCcEee-----------------ccc
Confidence 344555 5666666666666667776443221111 12467788999865536666 456
Q ss_pred CceEEEEeCCCCcEEEEeCCCCCCceEEEccCCCEEEEEecCCCEEEEEEcCCCCCcceeEee-c----C-CCCCCceEE
Q 018242 180 TGRLMKYDPATKQVTVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVA-Q----L-PGFPDNIKR 253 (359)
Q Consensus 180 ~g~v~~~d~~~~~~~~~~~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~-~----~-~~~p~~i~~ 253 (359)
++++-.|+....++.....--.-...+++.|||+. .+.++.++....|+..+.+......+. . . .....|+.+
T Consensus 431 D~KvRiWsI~d~~Vv~W~Dl~~lITAvcy~PdGk~-avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~ 509 (712)
T KOG0283|consen 431 DGKVRLWSISDKKVVDWNDLRDLITAVCYSPDGKG-AVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGKRITGLQF 509 (712)
T ss_pred ccceEEeecCcCeeEeehhhhhhheeEEeccCCce-EEEEEeccEEEEEEccCCeEEEeeeEeeccCccccCceeeeeEe
Confidence 77888888775555432222234678999999995 555567777777876554322111111 1 1 123455555
Q ss_pred CCC--CCEEEEEecCCCccccccccCCc-cceeeecC
Q 018242 254 SPR--GGFWVGIHSRRKGISKLVLSFPW-IGNVLIKL 287 (359)
Q Consensus 254 d~~--G~lwv~~~~~~~~~~~~~~~~~~-~g~~~~~~ 287 (359)
.+. ..+.|++.+++ |.+++- +.+++..+
T Consensus 510 ~p~~~~~vLVTSnDSr------IRI~d~~~~~lv~Kf 540 (712)
T KOG0283|consen 510 FPGDPDEVLVTSNDSR------IRIYDGRDKDLVHKF 540 (712)
T ss_pred cCCCCCeEEEecCCCc------eEEEeccchhhhhhh
Confidence 432 15889888776 666653 44555444
No 156
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=97.40 E-value=0.059 Score=49.44 Aligned_cols=171 Identities=10% Similarity=0.059 Sum_probs=78.9
Q ss_pred EEccCCC-eeEEecC--CCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEEeCC
Q 018242 40 AFDALGE-GPYTGVS--DGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIADAY 116 (359)
Q Consensus 40 ~~~~~G~-~l~~~~~--~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~~~~ 116 (359)
++.+||+ ++|.+.. +..++.+|+.+++.+++.+. ......|..+++++..+|.....
T Consensus 42 ~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg--------------------~g~~~~g~~~s~~~~~~~Yv~~~ 101 (386)
T PF14583_consen 42 CFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDG--------------------PGDNTFGGFLSPDDRALYYVKNG 101 (386)
T ss_dssp -B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---S--------------------S-B-TTT-EE-TTSSEEEEEETT
T ss_pred CcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccC--------------------CCCCccceEEecCCCeEEEEECC
Confidence 4567785 4454443 35899999999877765421 01112256667767777655445
Q ss_pred CcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCC--Ccccc-ccc--eeeeeecCCCceEEEEeCCCC
Q 018242 117 FGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSS--SQFQR-RNH--ISVILSGDKTGRLMKYDPATK 191 (359)
Q Consensus 117 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~--~~~~~-~~~--~~~~~~~~~~g~v~~~d~~~~ 191 (359)
..|.++|+++.+.+.+........ .--..+.+.|+. .+++... .++.. ..+ ..++.......+|+.+|.++|
T Consensus 102 ~~l~~vdL~T~e~~~vy~~p~~~~--g~gt~v~n~d~t-~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG 178 (386)
T PF14583_consen 102 RSLRRVDLDTLEERVVYEVPDDWK--GYGTWVANSDCT-KLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTG 178 (386)
T ss_dssp TEEEEEETTT--EEEEEE--TTEE--EEEEEEE-TTSS-EEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT-
T ss_pred CeEEEEECCcCcEEEEEECCcccc--cccceeeCCCcc-EEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCC
Confidence 679999999988776655322111 111234466777 6655311 11100 001 111222334457999999999
Q ss_pred cEEEEeCCCCCCceEEEccCCCEEEEE-ec-----CCCEEEEEEcCCC
Q 018242 192 QVTVLLGNLSFPNGVALSEDGNYILLA-ET-----TSCRILRYWLKTS 233 (359)
Q Consensus 192 ~~~~~~~~~~~p~gia~~~d~~~l~v~-~~-----~~~~i~~~~~~~~ 233 (359)
+.+.+......-..+.++|..-.++.- -. -+.+||.++.++.
T Consensus 179 ~~~~v~~~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~ 226 (386)
T PF14583_consen 179 ERKVVFEDTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGS 226 (386)
T ss_dssp -EEEEEEESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS-
T ss_pred ceeEEEecCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCC
Confidence 988776544433445555422222222 11 1357887776554
No 157
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=97.39 E-value=0.025 Score=50.47 Aligned_cols=203 Identities=14% Similarity=0.082 Sum_probs=105.7
Q ss_pred CCCEEEEeeCCCCCCceEEEccCCCeeEEecCCCEEEEEEcCCcceEE-EeecCCCCCCCCCCcccccccccccCCcceE
Q 018242 22 TQGVVQYQIEGAIGPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLH-FARTSPNRDGCEGAYEYDHAAKEHICGRPLG 100 (359)
Q Consensus 22 ~~~~~~~~~~~~~~p~~i~~~~~G~~l~~~~~~~~i~~~d~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g 100 (359)
.|..+++..+....-.+=.+.|+|+++.++..++.|..||++++.... +... .......
T Consensus 179 ~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~--------------------e~~~~~~ 238 (399)
T KOG0296|consen 179 SQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQA--------------------EGLELPC 238 (399)
T ss_pred CcceeeEecCCCCCcccccccCCCceEEEEecCceEEEEecCCCceeEEeccc--------------------ccCcCCc
Confidence 345667777754555566788999999999999999999999974221 1100 0111223
Q ss_pred EEEecCCCeEEEE-eCCCcEEEEeCCCCeEEEEeec-CC------CccccccceEEEeCCCCEEEEEeCCCcccccccee
Q 018242 101 LCFNKTNGDLYIA-DAYFGLLKVGPEGGLATAVATQ-SE------GIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHIS 172 (359)
Q Consensus 101 i~~~~~~g~l~v~-~~~~~i~~~~~~~~~~~~~~~~-~~------~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~ 172 (359)
+.+.. .+.+.+. +.....+..+..++++...... .+ ......+..+....+=. |..+
T Consensus 239 ~~~~~-~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lp-L~A~------------- 303 (399)
T KOG0296|consen 239 ISLNL-AGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLP-LAAC------------- 303 (399)
T ss_pred ccccc-ccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccc-hhhc-------------
Confidence 44443 3333332 2222233444444444322110 00 00001111111111111 2221
Q ss_pred eeeecCCCceEEEEeCCCCcEEEEeCCCCCCceEEEccCCCEEEEEecCCCEEEEEEcCCCCCcceeEeecCCCCCCceE
Q 018242 173 VILSGDKTGRLMKYDPATKQVTVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIK 252 (359)
Q Consensus 173 ~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~ 252 (359)
+...|+|..||....+++..-..-.....+.+.+ ..+||. ...++.|+.||...++.. -.+.......-.++
T Consensus 304 ----G~vdG~i~iyD~a~~~~R~~c~he~~V~~l~w~~-t~~l~t-~c~~g~v~~wDaRtG~l~--~~y~GH~~~Il~f~ 375 (399)
T KOG0296|consen 304 ----GSVDGTIAIYDLAASTLRHICEHEDGVTKLKWLN-TDYLLT-ACANGKVRQWDARTGQLK--FTYTGHQMGILDFA 375 (399)
T ss_pred ----ccccceEEEEecccchhheeccCCCceEEEEEcC-cchhee-eccCceEEeeeccccceE--EEEecCchheeEEE
Confidence 3456789999987666665544333345566666 344444 456789999996543221 11222222234578
Q ss_pred ECCCCCEEEEEecCC
Q 018242 253 RSPRGGFWVGIHSRR 267 (359)
Q Consensus 253 ~d~~G~lwv~~~~~~ 267 (359)
+.+++++.++....+
T Consensus 376 ls~~~~~vvT~s~D~ 390 (399)
T KOG0296|consen 376 LSPQKRLVVTVSDDN 390 (399)
T ss_pred EcCCCcEEEEecCCC
Confidence 889999998887654
No 158
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=97.37 E-value=0.055 Score=46.57 Aligned_cols=157 Identities=11% Similarity=0.109 Sum_probs=99.0
Q ss_pred CCCceEEEccCCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEE-E
Q 018242 34 IGPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLY-I 112 (359)
Q Consensus 34 ~~p~~i~~~~~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~-v 112 (359)
..-..+++.|.|++|.+++.+..+..|...+++|+-.. .++...++..++++++ +|++. .
T Consensus 62 rsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~efecv~------------------~lEGHEnEVK~Vaws~-sG~~LAT 122 (312)
T KOG0645|consen 62 RSVRSVAWSPHGRYLASASFDATVVIWKKEDGEFECVA------------------TLEGHENEVKCVAWSA-SGNYLAT 122 (312)
T ss_pred heeeeeeecCCCcEEEEeeccceEEEeecCCCceeEEe------------------eeeccccceeEEEEcC-CCCEEEE
Confidence 35568899999998888999999999988888777654 4556667788999999 55544 4
Q ss_pred EeCCCcEEEEeCC-CCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCC
Q 018242 113 ADAYFGLLKVGPE-GGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATK 191 (359)
Q Consensus 113 ~~~~~~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~ 191 (359)
+...+.+..+..+ +.++....- ..+ ....+-.++++|.-. |.++-+. ..+-++|+.+++ +
T Consensus 123 CSRDKSVWiWe~deddEfec~aV-L~~-HtqDVK~V~WHPt~d-lL~S~SY---------------DnTIk~~~~~~d-d 183 (312)
T KOG0645|consen 123 CSRDKSVWIWEIDEDDEFECIAV-LQE-HTQDVKHVIWHPTED-LLFSCSY---------------DNTIKVYRDEDD-D 183 (312)
T ss_pred eeCCCeEEEEEecCCCcEEEEee-ecc-ccccccEEEEcCCcc-eeEEecc---------------CCeEEEEeecCC-C
Confidence 4545555555443 344433221 111 112345688888776 7777332 123356665542 3
Q ss_pred cEE---EEeCCCCCCceEEEccCCCEEEEEecCCCEEEEEE
Q 018242 192 QVT---VLLGNLSFPNGVALSEDGNYILLAETTSCRILRYW 229 (359)
Q Consensus 192 ~~~---~~~~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~ 229 (359)
..+ .+...-.....++|++.|.. +++.+++.++..|.
T Consensus 184 dW~c~~tl~g~~~TVW~~~F~~~G~r-l~s~sdD~tv~Iw~ 223 (312)
T KOG0645|consen 184 DWECVQTLDGHENTVWSLAFDNIGSR-LVSCSDDGTVSIWR 223 (312)
T ss_pred CeeEEEEecCccceEEEEEecCCCce-EEEecCCcceEeee
Confidence 322 22233335678999998874 56666777777775
No 159
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=97.37 E-value=0.018 Score=53.69 Aligned_cols=236 Identities=16% Similarity=0.176 Sum_probs=125.2
Q ss_pred CCCceEEEccCCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEE
Q 018242 34 IGPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIA 113 (359)
Q Consensus 34 ~~p~~i~~~~~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~ 113 (359)
..-.++.+.+.|..+.+.+.......+|.++-++..+-.-... +.+-. .........+.-++.|...+.|++
T Consensus 215 h~i~sl~ys~Tg~~iLvvsg~aqakl~DRdG~~~~e~~KGDQY---I~Dm~-----nTKGHia~lt~g~whP~~k~~FlT 286 (641)
T KOG0772|consen 215 HQINSLQYSVTGDQILVVSGSAQAKLLDRDGFEIVEFSKGDQY---IRDMY-----NTKGHIAELTCGCWHPDNKEEFLT 286 (641)
T ss_pred cccceeeecCCCCeEEEEecCcceeEEccCCceeeeeeccchh---hhhhh-----ccCCceeeeeccccccCcccceEE
Confidence 3445788888888677666667778888877655544311100 00000 000111122344577877778887
Q ss_pred eCCCc-EEEEeCCCC--eEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCC
Q 018242 114 DAYFG-LLKVGPEGG--LATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPAT 190 (359)
Q Consensus 114 ~~~~~-i~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~ 190 (359)
...++ +..++.+.- +.+.+.....+..-..+...+++++|+ + |+. +-..|.|-.|+..+
T Consensus 287 ~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~-~-iAa----------------gc~DGSIQ~W~~~~ 348 (641)
T KOG0772|consen 287 CSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGK-L-IAA----------------GCLDGSIQIWDKGS 348 (641)
T ss_pred ecCCCcEEEEecCCchhheeEEeeccCCCcccCceeeecCCCcc-h-hhh----------------cccCCceeeeecCC
Confidence 66655 555665533 233333332222233566789999999 5 441 22356677777533
Q ss_pred CcEEEE------eCCCCCCceEEEccCCCEEEEEecCCCEEEEEEcCCCCCcceeEeecCC-CCC-CceEECCCCCEEEE
Q 018242 191 KQVTVL------LGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLP-GFP-DNIKRSPRGGFWVG 262 (359)
Q Consensus 191 ~~~~~~------~~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~-~~p-~~i~~d~~G~lwv~ 262 (359)
..+... +........|+|+.||++ +.+-..++.+..||+...+. ....+..++ .+| .+.+|+|+.+|.++
T Consensus 349 ~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~-LlSRg~D~tLKvWDLrq~kk-pL~~~tgL~t~~~~tdc~FSPd~kli~T 426 (641)
T KOG0772|consen 349 RTVRPVMKVKDAHLPGQDITSISFSYDGNY-LLSRGFDDTLKVWDLRQFKK-PLNVRTGLPTPFPGTDCCFSPDDKLILT 426 (641)
T ss_pred cccccceEeeeccCCCCceeEEEeccccch-hhhccCCCceeeeecccccc-chhhhcCCCccCCCCccccCCCceEEEe
Confidence 222211 122234578999999985 55556778999999865421 112222332 233 46899999887774
Q ss_pred EecC-CCccccccccCC-ccceeeecCCccceeeeee
Q 018242 263 IHSR-RKGISKLVLSFP-WIGNVLIKLPIDIVKIHSS 297 (359)
Q Consensus 263 ~~~~-~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~ 297 (359)
.... .....-.+..|+ .+-+...+++++...+..|
T Consensus 427 GtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~aSvv~~ 463 (641)
T KOG0772|consen 427 GTSAPNGMTAGTLFFFDRMTLDTVYKIDISTASVVRC 463 (641)
T ss_pred cccccCCCCCceEEEEeccceeeEEEecCCCceEEEE
Confidence 4321 111111133343 3455555555553333333
No 160
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=97.34 E-value=0.11 Score=46.63 Aligned_cols=208 Identities=12% Similarity=0.148 Sum_probs=115.4
Q ss_pred EEeeCCCCCCceEEEccCC-CeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCc-ceEEEEe
Q 018242 27 QYQIEGAIGPESLAFDALG-EGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGR-PLGLCFN 104 (359)
Q Consensus 27 ~~~~~~~~~p~~i~~~~~G-~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-p~gi~~~ 104 (359)
++.+.....-.++++-|.+ .-+.++.. ++|..|..+..... ....+.....+.+ .+....+. ...|...
T Consensus 134 ~Lks~sQrnvtclawRPlsaselavgCr-~gIciW~~s~tln~----~r~~~~~s~~~~q----vl~~pgh~pVtsmqwn 204 (445)
T KOG2139|consen 134 KLKSVSQRNVTCLAWRPLSASELAVGCR-AGICIWSDSRTLNA----NRNIRMMSTHHLQ----VLQDPGHNPVTSMQWN 204 (445)
T ss_pred eecchhhcceeEEEeccCCcceeeeeec-ceeEEEEcCccccc----ccccccccccchh----heeCCCCceeeEEEEc
Confidence 3333334455688888754 34556666 56888875432000 0000001111111 22333333 3577787
Q ss_pred cCCCeEEEEeCCC--cEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCce
Q 018242 105 KTNGDLYIADAYF--GLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGR 182 (359)
Q Consensus 105 ~~~g~l~v~~~~~--~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~ 182 (359)
+ +|..|+....+ .|..+|++++...++... ......-+.++|||.+++.+. .+ .
T Consensus 205 ~-dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~----glgg~slLkwSPdgd~lfaAt------------------~d-a 260 (445)
T KOG2139|consen 205 E-DGTILVTASFGSSSIMIWDPDTGQKIPLIPK----GLGGFSLLKWSPDGDVLFAAT------------------CD-A 260 (445)
T ss_pred C-CCCEEeecccCcceEEEEcCCCCCccccccc----CCCceeeEEEcCCCCEEEEec------------------cc-c
Confidence 8 78888765432 488999999987665421 223455689999999555552 12 3
Q ss_pred EEEEeCCCC--cEEEEeCCCCCCceEEEccCCCEEEEEecCCCEEEEEEcCCCC--Cc------ceeEeecC--------
Q 018242 183 LMKYDPATK--QVTVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSK--AG------TIEIVAQL-------- 244 (359)
Q Consensus 183 v~~~d~~~~--~~~~~~~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~--~~------~~~~~~~~-------- 244 (359)
++++-..++ ..+...-+-....+-+++|+|+.|+++-...-.|+....+... .. ......++
T Consensus 261 vfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~sgsp~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag 340 (445)
T KOG2139|consen 261 VFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFACSGSPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAG 340 (445)
T ss_pred eeeeehhcccceecceeccCCceeeeeecCCCCEEEEEEcCCceEEEEeecCCCccccCcccceeeeeeccchhhhhhcC
Confidence 444321111 2222111112456778999999999998898899987764321 11 11112222
Q ss_pred ----CCCCCceEECCCCCEEEEEecCC
Q 018242 245 ----PGFPDNIKRSPRGGFWVGIHSRR 267 (359)
Q Consensus 245 ----~~~p~~i~~d~~G~lwv~~~~~~ 267 (359)
.+.+..|+.|+.|+..+....+.
T Consensus 341 ~~l~cgeaq~lawDpsGeyLav~fKg~ 367 (445)
T KOG2139|consen 341 QRLCCGEAQCLAWDPSGEYLAVIFKGQ 367 (445)
T ss_pred cccccCccceeeECCCCCEEEEEEcCC
Confidence 23466799999998777666543
No 161
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=97.33 E-value=0.016 Score=56.72 Aligned_cols=183 Identities=11% Similarity=0.060 Sum_probs=113.8
Q ss_pred ceEEEccCCCeeEEecCCCEEEEEEcCCcc-eEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEEeC
Q 018242 37 ESLAFDALGEGPYTGVSDGRIIKWHQDQRR-WLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIADA 115 (359)
Q Consensus 37 ~~i~~~~~G~~l~~~~~~~~i~~~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~~~ 115 (359)
-+|.++.++- |..+.++..+..|++...+ +..| .+ ....+.++|.|.|.+.|++..
T Consensus 373 LDlSWSKn~f-LLSSSMDKTVRLWh~~~~~CL~~F---------------------~H-ndfVTcVaFnPvDDryFiSGS 429 (712)
T KOG0283|consen 373 LDLSWSKNNF-LLSSSMDKTVRLWHPGRKECLKVF---------------------SH-NDFVTCVAFNPVDDRYFISGS 429 (712)
T ss_pred eecccccCCe-eEeccccccEEeecCCCcceeeEE---------------------ec-CCeeEEEEecccCCCcEeecc
Confidence 3667777766 8899999999999998653 3333 22 244789999999999999855
Q ss_pred CC-cEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCCcEE
Q 018242 116 YF-GLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQVT 194 (359)
Q Consensus 116 ~~-~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~ 194 (359)
-+ .+..+++...++....+ . ...+.+++..|||+...|+ +..|....|+..+.++.
T Consensus 430 LD~KvRiWsI~d~~Vv~W~D-l----~~lITAvcy~PdGk~avIG------------------t~~G~C~fY~t~~lk~~ 486 (712)
T KOG0283|consen 430 LDGKVRLWSISDKKVVDWND-L----RDLITAVCYSPDGKGAVIG------------------TFNGYCRFYDTEGLKLV 486 (712)
T ss_pred cccceEEeecCcCeeEeehh-h----hhhheeEEeccCCceEEEE------------------EeccEEEEEEccCCeEE
Confidence 44 47778887777654332 1 1357789999999966666 34566777887765554
Q ss_pred EEe----CC-----CCCCceEEEccC-CCEEEEEecCCCEEEEEEcCCCCC-cceeEeecCCCCCCceEECCCCCEEEEE
Q 018242 195 VLL----GN-----LSFPNGVALSED-GNYILLAETTSCRILRYWLKTSKA-GTIEIVAQLPGFPDNIKRSPRGGFWVGI 263 (359)
Q Consensus 195 ~~~----~~-----~~~p~gia~~~d-~~~l~v~~~~~~~i~~~~~~~~~~-~~~~~~~~~~~~p~~i~~d~~G~lwv~~ 263 (359)
.-. .. .....|+.+.|. ...++|+. .+.+|..||..+..+ .+++.+..... ..-..+..||+..|.+
T Consensus 487 ~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTS-nDSrIRI~d~~~~~lv~KfKG~~n~~S-Q~~Asfs~Dgk~IVs~ 564 (712)
T KOG0283|consen 487 SDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTS-NDSRIRIYDGRDKDLVHKFKGFRNTSS-QISASFSSDGKHIVSA 564 (712)
T ss_pred EeeeEeeccCccccCceeeeeEecCCCCCeEEEec-CCCceEEEeccchhhhhhhcccccCCc-ceeeeEccCCCEEEEe
Confidence 321 10 113568877753 23467764 567999999743221 12222222111 1224555678766655
Q ss_pred ecCC
Q 018242 264 HSRR 267 (359)
Q Consensus 264 ~~~~ 267 (359)
....
T Consensus 565 seDs 568 (712)
T KOG0283|consen 565 SEDS 568 (712)
T ss_pred ecCc
Confidence 5443
No 162
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=97.32 E-value=0.021 Score=52.45 Aligned_cols=152 Identities=16% Similarity=0.140 Sum_probs=89.0
Q ss_pred ceEEEccCCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEEeCC
Q 018242 37 ESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIADAY 116 (359)
Q Consensus 37 ~~i~~~~~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~~~~ 116 (359)
.+++-+|+|.+++.++..+.||.|...++.... .+.........+.|+. ||.++++..+
T Consensus 85 ~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~--------------------v~~aHYQ~ITcL~fs~-dgs~iiTgsk 143 (476)
T KOG0646|consen 85 HALASSNLGYFLLAGTISGNLYLWELSSGILLN--------------------VLSAHYQSITCLKFSD-DGSHIITGSK 143 (476)
T ss_pred eeeecCCCceEEEeecccCcEEEEEeccccHHH--------------------HHHhhccceeEEEEeC-CCcEEEecCC
Confidence 378888999977788788999999999883221 2222233456788887 7777777656
Q ss_pred Cc-EEEEeCC------C-CeEEEEeecCCCccccccceEEEeCC---CCEEEEEeCCCccccccceeeeeecCCCceEEE
Q 018242 117 FG-LLKVGPE------G-GLATAVATQSEGIPFRFCNSLDIDQS---TGIIYFTDSSSQFQRRNHISVILSGDKTGRLMK 185 (359)
Q Consensus 117 ~~-i~~~~~~------~-~~~~~~~~~~~~~~~~~~~~l~~d~~---g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~ 185 (359)
+| |..+..- . ..+.++.. ..+ .-..+.++.++.- .+ +|-+ +.+.++-.
T Consensus 144 Dg~V~vW~l~~lv~a~~~~~~~p~~~-f~~-HtlsITDl~ig~Gg~~~r-l~Ta------------------S~D~t~k~ 202 (476)
T KOG0646|consen 144 DGAVLVWLLTDLVSADNDHSVKPLHI-FSD-HTLSITDLQIGSGGTNAR-LYTA------------------SEDRTIKL 202 (476)
T ss_pred CccEEEEEEEeecccccCCCccceee-ecc-CcceeEEEEecCCCccce-EEEe------------------cCCceEEE
Confidence 55 4444321 1 11111100 000 1113344554432 23 4444 23345667
Q ss_pred EeCCCCcEEEEeCCCCCCceEEEccCCCEEEEEecCCCEEEEEEcC
Q 018242 186 YDPATKQVTVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLK 231 (359)
Q Consensus 186 ~d~~~~~~~~~~~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~ 231 (359)
||...+.+..-..-...+..+++||-++.+|+.. ..+.|+..++.
T Consensus 203 wdlS~g~LLlti~fp~si~av~lDpae~~~yiGt-~~G~I~~~~~~ 247 (476)
T KOG0646|consen 203 WDLSLGVLLLTITFPSSIKAVALDPAERVVYIGT-EEGKIFQNLLF 247 (476)
T ss_pred EEeccceeeEEEecCCcceeEEEcccccEEEecC-CcceEEeeehh
Confidence 7777665543222234467899999988777765 55789888764
No 163
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=97.32 E-value=0.024 Score=52.50 Aligned_cols=193 Identities=9% Similarity=0.058 Sum_probs=88.5
Q ss_pred CCCCCceEEEccCCCeeEEecC------CCEEEEEEcCCcceEEEeecCCCCCCCCCCccccccccccc---CCcceEEE
Q 018242 32 GAIGPESLAFDALGEGPYTGVS------DGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHI---CGRPLGLC 102 (359)
Q Consensus 32 ~~~~p~~i~~~~~G~~l~~~~~------~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~p~gi~ 102 (359)
++..|+.+-.-|+|++++.+.. .|++..+|.++-++.. ..+.. ...-..+.
T Consensus 128 g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~tf~v~g--------------------~We~~~~~~~~gYDfw 187 (461)
T PF05694_consen 128 GLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGETFEVKG--------------------RWEKDRGPQPFGYDFW 187 (461)
T ss_dssp -EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TTT--EEE--------------------E--SB-TT------EE
T ss_pred CCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCccccccc--------------------eeccCCCCCCCCCCeE
Confidence 4668888888899994443322 2688888887643221 11111 01123455
Q ss_pred EecCCCeEEEEeC---------------------CCcEEEEeCCCCeEEEEeecCCCccccccceE--EEeCCCCEEEEE
Q 018242 103 FNKTNGDLYIADA---------------------YFGLLKVGPEGGLATAVATQSEGIPFRFCNSL--DIDQSTGIIYFT 159 (359)
Q Consensus 103 ~~~~~g~l~v~~~---------------------~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~d~~g~~l~v~ 159 (359)
+.+ ..++.|++. ++.|..+|.++++..+..+.... ...|-.| +-+|+..+=|++
T Consensus 188 ~qp-r~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~--g~~pLEvRflH~P~~~~gFvg 264 (461)
T PF05694_consen 188 YQP-RHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEE--GQMPLEVRFLHDPDANYGFVG 264 (461)
T ss_dssp EET-TTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TT--EEEEEEEEE-SSTT--EEEEE
T ss_pred EcC-CCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCC--CCceEEEEecCCCCccceEEE
Confidence 667 666666641 23488899988887655443221 1122223 334555545555
Q ss_pred eCCCccccccceeeeeecCCCceEEEEeC-CCCcEE-----EEeC---------CC--------CCCceEEEccCCCEEE
Q 018242 160 DSSSQFQRRNHISVILSGDKTGRLMKYDP-ATKQVT-----VLLG---------NL--------SFPNGVALSEDGNYIL 216 (359)
Q Consensus 160 d~~~~~~~~~~~~~~~~~~~~g~v~~~d~-~~~~~~-----~~~~---------~~--------~~p~gia~~~d~~~l~ 216 (359)
.. ..+.|+++-. +.++.. .+.. .+ .-+..|.++.|.++||
T Consensus 265 ~a-----------------Lss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLY 327 (461)
T PF05694_consen 265 CA-----------------LSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDRFLY 327 (461)
T ss_dssp EE-------------------EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS-EEE
T ss_pred Ee-----------------ccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCCCEEE
Confidence 22 2345665544 223221 1110 11 2346888999999999
Q ss_pred EEecCCCEEEEEEcCCCCCccee--Eeec---------------CCCCCCceEECCCC-CEEEEEe
Q 018242 217 LAETTSCRILRYWLKTSKAGTIE--IVAQ---------------LPGFPDNIKRSPRG-GFWVGIH 264 (359)
Q Consensus 217 v~~~~~~~i~~~~~~~~~~~~~~--~~~~---------------~~~~p~~i~~d~~G-~lwv~~~ 264 (359)
+++...+.|..||+.++...+.. ++.. +.+.|.-+.++.|| +||+++.
T Consensus 328 vs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvTnS 393 (461)
T PF05694_consen 328 VSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVTNS 393 (461)
T ss_dssp EEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEEEE--
T ss_pred EEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEEEEee
Confidence 99999999999999865432211 1111 22346668889999 5999876
No 164
>COG3211 PhoX Predicted phosphatase [General function prediction only]
Probab=97.31 E-value=0.0028 Score=59.89 Aligned_cols=116 Identities=18% Similarity=0.235 Sum_probs=71.4
Q ss_pred cceEEEEecCCCeEEEEeCCC-----------------cEEEEeCCCC-------eEEEEeecCCC-------------c
Q 018242 97 RPLGLCFNKTNGDLYIADAYF-----------------GLLKVGPEGG-------LATAVATQSEG-------------I 139 (359)
Q Consensus 97 ~p~gi~~~~~~g~l~v~~~~~-----------------~i~~~~~~~~-------~~~~~~~~~~~-------------~ 139 (359)
+|-.+++.+..+++|++...+ .|+|+-+.++ ++..+...... .
T Consensus 418 RpE~i~~~p~~g~Vy~~lTNn~~r~~~~aNpr~~n~~G~I~r~~p~~~d~t~~~ftWdlF~~aG~~~~~~~~~~~~~~~~ 497 (616)
T COG3211 418 RPEWIAVNPGTGEVYFTLTNNGKRSDDAANPRAKNGYGQIVRWIPATGDHTDTKFTWDLFVEAGNPSVLEGGASANINAN 497 (616)
T ss_pred CccceeecCCcceEEEEeCCCCccccccCCCcccccccceEEEecCCCCccCccceeeeeeecCCccccccccccCcccc
Confidence 566889999889999984321 3899988776 33333321111 0
Q ss_pred cccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCCcEEEEeCCC--CCCceEEEccCCCEEEE
Q 018242 140 PFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQVTVLLGNL--SFPNGVALSEDGNYILL 217 (359)
Q Consensus 140 ~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~--~~p~gia~~~d~~~l~v 217 (359)
-+..|.+|++|+.|+ |||.+.++.-...+.. .....+..-++.+++++.+.... ....|.+|+||++++||
T Consensus 498 ~f~~PDnl~fD~~Gr-LWi~TDg~~s~~~~~~------~G~~~m~~~~p~~g~~~rf~t~P~g~E~tG~~FspD~~TlFV 570 (616)
T COG3211 498 WFNSPDNLAFDPWGR-LWIQTDGSGSTLRNRF------RGVTQMLTPDPKTGTIKRFLTGPIGCEFTGPCFSPDGKTLFV 570 (616)
T ss_pred cccCCCceEECCCCC-EEEEecCCCCccCccc------ccccccccCCCccceeeeeccCCCcceeecceeCCCCceEEE
Confidence 134589999999999 9999765321100000 00012334455666666655432 34569999999999988
Q ss_pred Ee
Q 018242 218 AE 219 (359)
Q Consensus 218 ~~ 219 (359)
.-
T Consensus 571 ~v 572 (616)
T COG3211 571 NV 572 (616)
T ss_pred Ee
Confidence 64
No 165
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=97.30 E-value=0.0081 Score=52.78 Aligned_cols=189 Identities=13% Similarity=0.077 Sum_probs=96.1
Q ss_pred cCCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEEeCCCcEEEE
Q 018242 43 ALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIADAYFGLLKV 122 (359)
Q Consensus 43 ~~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~~~~~~i~~~ 122 (359)
|+-.++.++..+.-|..||..+++.+.-- +.+.........+.++|++ ||+-.++...+.|..+
T Consensus 121 P~t~l~a~ssr~~PIh~wdaftG~lraSy---------------~~ydh~de~taAhsL~Fs~-DGeqlfaGykrcirvF 184 (406)
T KOG2919|consen 121 PSTNLFAVSSRDQPIHLWDAFTGKLRASY---------------RAYDHQDEYTAAHSLQFSP-DGEQLFAGYKRCIRVF 184 (406)
T ss_pred CccceeeeccccCceeeeeccccccccch---------------hhhhhHHhhhhheeEEecC-CCCeEeecccceEEEe
Confidence 55553334555577888888877543210 0001111112356899999 5554444456678888
Q ss_pred eC-CCCeEEEEeecCCC---ccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCCcEEEEeC
Q 018242 123 GP-EGGLATAVATQSEG---IPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQVTVLLG 198 (359)
Q Consensus 123 ~~-~~~~~~~~~~~~~~---~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~ 198 (359)
|. ..|..-........ .....+..++++|-....+..-+ | ...-+|+..+.. +-+.....
T Consensus 185 dt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gs---Y------------~q~~giy~~~~~-~pl~llgg 248 (406)
T KOG2919|consen 185 DTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGS---Y------------GQRVGIYNDDGR-RPLQLLGG 248 (406)
T ss_pred eccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeec---c------------cceeeeEecCCC-Cceeeecc
Confidence 87 33432222111111 01223344566654331222210 0 111246655532 22333333
Q ss_pred CCCCCceEEEccCCCEEEEEecCCCEEEEEEcCCCCCcceeEeecCCCCCCceEE--CCCCCEEEEE
Q 018242 199 NLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKR--SPRGGFWVGI 263 (359)
Q Consensus 199 ~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~--d~~G~lwv~~ 263 (359)
...+...+.+.+||+.||........|..||+...+..-.........-...|.+ |++|++.++.
T Consensus 249 h~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG 315 (406)
T KOG2919|consen 249 HGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASG 315 (406)
T ss_pred cCCCeeeEEeccCcCeecccccCCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCCceeecc
Confidence 4455678899999999999999999999999864321111100011111223544 5778777754
No 166
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=97.29 E-value=0.009 Score=55.44 Aligned_cols=182 Identities=9% Similarity=0.053 Sum_probs=108.4
Q ss_pred eEEEccCCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcc--eEEEEecCCCeEEEEeC
Q 018242 38 SLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRP--LGLCFNKTNGDLYIADA 115 (359)
Q Consensus 38 ~i~~~~~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p--~gi~~~~~~g~l~v~~~ 115 (359)
+..+.+||+.|.++-+-..+-+||+-.-..+ +..+.....| ..++++++..-.|.+-.
T Consensus 470 SckL~pdgrtLivGGeastlsiWDLAapTpr--------------------ikaeltssapaCyALa~spDakvcFsccs 529 (705)
T KOG0639|consen 470 SCKLLPDGRTLIVGGEASTLSIWDLAAPTPR--------------------IKAELTSSAPACYALAISPDAKVCFSCCS 529 (705)
T ss_pred eeEecCCCceEEeccccceeeeeeccCCCcc--------------------hhhhcCCcchhhhhhhcCCccceeeeecc
Confidence 4557789999999988889999998653111 1112222223 35778884444444444
Q ss_pred CCcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCCcEEE
Q 018242 116 YFGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQVTV 195 (359)
Q Consensus 116 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~ 195 (359)
.+.|..+|+....+. ..+.+. -.....|.+++||..||.+ +.+.+|.+||...++-.
T Consensus 530 dGnI~vwDLhnq~~V---rqfqGh-tDGascIdis~dGtklWTG------------------GlDntvRcWDlregrql- 586 (705)
T KOG0639|consen 530 DGNIAVWDLHNQTLV---RQFQGH-TDGASCIDISKDGTKLWTG------------------GLDNTVRCWDLREGRQL- 586 (705)
T ss_pred CCcEEEEEcccceee---ecccCC-CCCceeEEecCCCceeecC------------------CCccceeehhhhhhhhh-
Confidence 445888898765432 112221 1245678899999889987 45668999998654321
Q ss_pred EeCCC-CCCceEEEccCCCEEEEEecCCCEEEEEEcCCCCCcceeEeecCCCCCCceEECCCCCEEEEEecC
Q 018242 196 LLGNL-SFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGGFWVGIHSR 266 (359)
Q Consensus 196 ~~~~~-~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lwv~~~~~ 266 (359)
....+ .....+..+|.+.++.|. ..++.+++.....+. +++. .......=.+.|..-|+.|+.+...
T Consensus 587 qqhdF~SQIfSLg~cP~~dWlavG-Mens~vevlh~skp~--kyql-hlheScVLSlKFa~cGkwfvStGkD 654 (705)
T KOG0639|consen 587 QQHDFSSQIFSLGYCPTGDWLAVG-MENSNVEVLHTSKPE--KYQL-HLHESCVLSLKFAYCGKWFVSTGKD 654 (705)
T ss_pred hhhhhhhhheecccCCCccceeee-cccCcEEEEecCCcc--ceee-cccccEEEEEEecccCceeeecCch
Confidence 12222 234566677888876665 566778887654331 1111 1111122347788899999987653
No 167
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=97.28 E-value=0.089 Score=48.43 Aligned_cols=149 Identities=20% Similarity=0.165 Sum_probs=90.1
Q ss_pred eEEEccCCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEEeCCC
Q 018242 38 SLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIADAYF 117 (359)
Q Consensus 38 ~i~~~~~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~~~~~ 117 (359)
++++++||+++.++-.+..|..|+.++.+... .+....+...+++|=....+||.+....
T Consensus 207 ~~avS~Dgkylatgg~d~~v~Iw~~~t~ehv~--------------------~~~ghr~~V~~L~fr~gt~~lys~s~Dr 266 (479)
T KOG0299|consen 207 TLAVSSDGKYLATGGRDRHVQIWDCDTLEHVK--------------------VFKGHRGAVSSLAFRKGTSELYSASADR 266 (479)
T ss_pred EEEEcCCCcEEEecCCCceEEEecCcccchhh--------------------cccccccceeeeeeecCccceeeeecCC
Confidence 78999999955566666788899998873221 2334445567888877678899987766
Q ss_pred cEEEEeCCCCe-EEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCCcEEE-
Q 018242 118 GLLKVGPEGGL-ATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQVTV- 195 (359)
Q Consensus 118 ~i~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~- 195 (359)
.+-.++.+.-. ++.+... ...+.+|.+...++ . ++.-+ ...+..+|++ |+ +.+.
T Consensus 267 svkvw~~~~~s~vetlyGH-----qd~v~~IdaL~reR-~-vtVGg--------------rDrT~rlwKi-~e--esqli 322 (479)
T KOG0299|consen 267 SVKVWSIDQLSYVETLYGH-----QDGVLGIDALSRER-C-VTVGG--------------RDRTVRLWKI-PE--ESQLI 322 (479)
T ss_pred ceEEEehhHhHHHHHHhCC-----ccceeeechhcccc-e-EEecc--------------ccceeEEEec-cc--cceee
Confidence 77777765322 1111111 12333444445555 2 22111 1223456666 22 2222
Q ss_pred EeCCCCCCceEEEccCCCEEEEEecCCCEEEEEEcCC
Q 018242 196 LLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKT 232 (359)
Q Consensus 196 ~~~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~ 232 (359)
+..+-..+.-++|=.+. -|++++.++.|..|.+..
T Consensus 323 frg~~~sidcv~~In~~--HfvsGSdnG~IaLWs~~K 357 (479)
T KOG0299|consen 323 FRGGEGSIDCVAFINDE--HFVSGSDNGSIALWSLLK 357 (479)
T ss_pred eeCCCCCeeeEEEeccc--ceeeccCCceEEEeeecc
Confidence 33444467777776555 489999999999998754
No 168
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=97.27 E-value=0.046 Score=50.93 Aligned_cols=116 Identities=13% Similarity=0.139 Sum_probs=75.9
Q ss_pred cceEEEEecCCCeEEEEeCCCcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeee
Q 018242 97 RPLGLCFNKTNGDLYIADAYFGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILS 176 (359)
Q Consensus 97 ~p~gi~~~~~~g~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~ 176 (359)
..+.+.+.+++..|.++.....+..+|+..-..+ +...... ......++++++|-+ +-++.-.
T Consensus 467 yiRSckL~pdgrtLivGGeastlsiWDLAapTpr-ikaelts-sapaCyALa~spDak-vcFsccs-------------- 529 (705)
T KOG0639|consen 467 YIRSCKLLPDGRTLIVGGEASTLSIWDLAAPTPR-IKAELTS-SAPACYALAISPDAK-VCFSCCS-------------- 529 (705)
T ss_pred ceeeeEecCCCceEEeccccceeeeeeccCCCcc-hhhhcCC-cchhhhhhhcCCccc-eeeeecc--------------
Confidence 3456667785667777765556778887644322 1111111 113567899999999 7777322
Q ss_pred cCCCceEEEEeCCCCcEE-EEeCCCCCCceEEEccCCCEEEEEecCCCEEEEEEcCCC
Q 018242 177 GDKTGRLMKYDPATKQVT-VLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTS 233 (359)
Q Consensus 177 ~~~~g~v~~~d~~~~~~~-~~~~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~ 233 (359)
.|.|..||.....+. .+.+...+..-|.+++||. .+|++--+++|..||+...
T Consensus 530 ---dGnI~vwDLhnq~~VrqfqGhtDGascIdis~dGt-klWTGGlDntvRcWDlreg 583 (705)
T KOG0639|consen 530 ---DGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGT-KLWTGGLDNTVRCWDLREG 583 (705)
T ss_pred ---CCcEEEEEcccceeeecccCCCCCceeEEecCCCc-eeecCCCccceeehhhhhh
Confidence 567889998754433 3444455667788999987 5677778899999998654
No 169
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=97.24 E-value=0.016 Score=58.46 Aligned_cols=103 Identities=15% Similarity=0.215 Sum_probs=67.0
Q ss_pred cccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCCcEE-EEeCCCCCCceEEEccCCCEEEEEec
Q 018242 142 RFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQVT-VLLGNLSFPNGVALSEDGNYILLAET 220 (359)
Q Consensus 142 ~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~-~~~~~~~~p~gia~~~d~~~l~v~~~ 220 (359)
..+.++.++|++. +.++- +....|..|+..+.+.. .+..+...+-|+.|||-|++ +.+.+
T Consensus 130 ~DV~Dv~Wsp~~~-~lvS~-----------------s~DnsViiwn~~tF~~~~vl~~H~s~VKGvs~DP~Gky-~ASqs 190 (942)
T KOG0973|consen 130 SDVLDVNWSPDDS-LLVSV-----------------SLDNSVIIWNAKTFELLKVLRGHQSLVKGVSWDPIGKY-FASQS 190 (942)
T ss_pred CccceeccCCCcc-EEEEe-----------------cccceEEEEccccceeeeeeecccccccceEECCccCe-eeeec
Confidence 3567899999998 66662 34568999998765433 33455567889999999984 67777
Q ss_pred CCCEEEEEEcCCCCCcceeE----eecCC--CCCCceEECCCCCEEEEEec
Q 018242 221 TSCRILRYWLKTSKAGTIEI----VAQLP--GFPDNIKRSPRGGFWVGIHS 265 (359)
Q Consensus 221 ~~~~i~~~~~~~~~~~~~~~----~~~~~--~~p~~i~~d~~G~lwv~~~~ 265 (359)
++..|.+|+..+ .+-.+. |.+.+ .+...+.++|||...++.+.
T Consensus 191 dDrtikvwrt~d--w~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA 239 (942)
T KOG0973|consen 191 DDRTLKVWRTSD--WGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNA 239 (942)
T ss_pred CCceEEEEEccc--ceeeEeeccchhhCCCcceeeecccCCCcCeecchhh
Confidence 888888887432 111111 22212 23345777889977765443
No 170
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=97.22 E-value=0.13 Score=50.28 Aligned_cols=127 Identities=13% Similarity=0.082 Sum_probs=66.8
Q ss_pred CCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEEeCCCcEEEEe
Q 018242 44 LGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIADAYFGLLKVG 123 (359)
Q Consensus 44 ~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~~~~~~i~~~~ 123 (359)
+|+ +|+++..+.|+.+|..+++...-...... .. .. ..........++++. ++++|+++....|+.+|
T Consensus 69 ~g~-vyv~s~~g~v~AlDa~TGk~lW~~~~~~~-~~-~~-------~~~~~~~~~rg~av~--~~~v~v~t~dg~l~ALD 136 (527)
T TIGR03075 69 DGV-MYVTTSYSRVYALDAKTGKELWKYDPKLP-DD-VI-------PVMCCDVVNRGVALY--DGKVFFGTLDARLVALD 136 (527)
T ss_pred CCE-EEEECCCCcEEEEECCCCceeeEecCCCC-cc-cc-------cccccccccccceEE--CCEEEEEcCCCEEEEEE
Confidence 455 88888888999999998754332111000 00 00 000000012345554 67899988777799999
Q ss_pred CCCCeEEEEeecCCCc-cccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCCcEEEE
Q 018242 124 PEGGLATAVATQSEGI-PFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQVTVL 196 (359)
Q Consensus 124 ~~~~~~~~~~~~~~~~-~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~ 196 (359)
.++|+..--....... .......-++ .+++ +|++..+..+ ...|.|+.+|.++|+....
T Consensus 137 a~TGk~~W~~~~~~~~~~~~~tssP~v-~~g~-Vivg~~~~~~------------~~~G~v~AlD~~TG~~lW~ 196 (527)
T TIGR03075 137 AKTGKVVWSKKNGDYKAGYTITAAPLV-VKGK-VITGISGGEF------------GVRGYVTAYDAKTGKLVWR 196 (527)
T ss_pred CCCCCEEeecccccccccccccCCcEE-ECCE-EEEeeccccc------------CCCcEEEEEECCCCceeEe
Confidence 9999864321111000 0000011112 1455 8887543221 1246788888888876653
No 171
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=97.20 E-value=0.12 Score=44.49 Aligned_cols=195 Identities=13% Similarity=0.070 Sum_probs=114.0
Q ss_pred eCCCCCCceEEEccC-CCeeEEecCCCEEEEEEcC-CcceEEEeecCCCCCCCCCCcccccccccc-cCCcceEEEEecC
Q 018242 30 IEGAIGPESLAFDAL-GEGPYTGVSDGRIIKWHQD-QRRWLHFARTSPNRDGCEGAYEYDHAAKEH-ICGRPLGLCFNKT 106 (359)
Q Consensus 30 ~~~~~~p~~i~~~~~-G~~l~~~~~~~~i~~~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~p~gi~~~~~ 106 (359)
.+....-+.+++.|- |++++.+..+..|..|+.. ...+.-.. .+.. .....+.++++|
T Consensus 11 ~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~------------------vld~~hkrsVRsvAwsp- 71 (312)
T KOG0645|consen 11 SGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKT------------------VLDDGHKRSVRSVAWSP- 71 (312)
T ss_pred cCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEE------------------eccccchheeeeeeecC-
Confidence 333345778999997 8878888888999999987 34343321 1111 123467899999
Q ss_pred CCeEEEEeCCCc-EEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEE
Q 018242 107 NGDLYIADAYFG-LLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMK 185 (359)
Q Consensus 107 ~g~l~v~~~~~~-i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~ 185 (359)
.|++.++...+. +..+.-..++++.+.. ..+ +.+.+-.++++++|+ +..+-+ +.-.|+.
T Consensus 72 ~g~~La~aSFD~t~~Iw~k~~~efecv~~-lEG-HEnEVK~Vaws~sG~-~LATCS-----------------RDKSVWi 131 (312)
T KOG0645|consen 72 HGRYLASASFDATVVIWKKEDGEFECVAT-LEG-HENEVKCVAWSASGN-YLATCS-----------------RDKSVWI 131 (312)
T ss_pred CCcEEEEeeccceEEEeecCCCceeEEee-eec-cccceeEEEEcCCCC-EEEEee-----------------CCCeEEE
Confidence 666555444443 4555555666655432 222 224566799999999 444422 2224554
Q ss_pred EeCC-CCcEEEE---eCCCCCCceEEEccCCCEEEEEecCCCEEEEEEcCCCCCcceeEeecCC---CCCCceEECCCCC
Q 018242 186 YDPA-TKQVTVL---LGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLP---GFPDNIKRSPRGG 258 (359)
Q Consensus 186 ~d~~-~~~~~~~---~~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~---~~p~~i~~d~~G~ 258 (359)
+..+ +.+++.. ..+..-.-.+.+.|... |+++.+.+++|..|.-.++ ..-+....+. +-...++||+.|.
T Consensus 132 We~deddEfec~aVL~~HtqDVK~V~WHPt~d-lL~S~SYDnTIk~~~~~~d--ddW~c~~tl~g~~~TVW~~~F~~~G~ 208 (312)
T KOG0645|consen 132 WEIDEDDEFECIAVLQEHTQDVKHVIWHPTED-LLFSCSYDNTIKVYRDEDD--DDWECVQTLDGHENTVWSLAFDNIGS 208 (312)
T ss_pred EEecCCCcEEEEeeeccccccccEEEEcCCcc-eeEEeccCCeEEEEeecCC--CCeeEEEEecCccceEEEEEecCCCc
Confidence 4433 3455532 23344456788888554 8888899999999875422 1222222222 2235578888885
Q ss_pred EEEEEecC
Q 018242 259 FWVGIHSR 266 (359)
Q Consensus 259 lwv~~~~~ 266 (359)
-.+++...
T Consensus 209 rl~s~sdD 216 (312)
T KOG0645|consen 209 RLVSCSDD 216 (312)
T ss_pred eEEEecCC
Confidence 55544443
No 172
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=97.19 E-value=0.03 Score=50.76 Aligned_cols=203 Identities=15% Similarity=0.154 Sum_probs=111.1
Q ss_pred CCCCceEEEccCCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEE
Q 018242 33 AIGPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYI 112 (359)
Q Consensus 33 ~~~p~~i~~~~~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v 112 (359)
...-..+.+|++++...++++++.+..||.+..+... .+.........+-+...... .|
T Consensus 219 ~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~--------------------TLsGHtdkVt~ak~~~~~~~-vV 277 (459)
T KOG0288|consen 219 LGNITSIDFDSDNKHVIAASNDKNLRLWNVDSLRLRH--------------------TLSGHTDKVTAAKFKLSHSR-VV 277 (459)
T ss_pred CCCcceeeecCCCceEEeecCCCceeeeeccchhhhh--------------------hhcccccceeeehhhccccc-ee
Confidence 3455689999999977788888999999987653211 11111122222222221111 33
Q ss_pred EeCCC-cEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCC
Q 018242 113 ADAYF-GLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATK 191 (359)
Q Consensus 113 ~~~~~-~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~ 191 (359)
....+ .|-.+|+....-. ... .+....++|+.. +. .+++ +....+|-.||..+.
T Consensus 278 sgs~DRtiK~WDl~k~~C~--kt~---l~~S~cnDI~~~--~~-~~~S-----------------gH~DkkvRfwD~Rs~ 332 (459)
T KOG0288|consen 278 SGSADRTIKLWDLQKAYCS--KTV---LPGSQCNDIVCS--IS-DVIS-----------------GHFDKKVRFWDIRSA 332 (459)
T ss_pred eccccchhhhhhhhhhhee--ccc---cccccccceEec--ce-eeee-----------------cccccceEEEeccCC
Confidence 22222 2333444332211 011 133466777765 22 4444 234567888986555
Q ss_pred cEEEEeCCCCCCceEEEccCCCEEEEEecCCCEEEEEEcCCCCCcceeEeecCCCC-----CCceEECCCCCEEEEEecC
Q 018242 192 QVTVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGF-----PDNIKRSPRGGFWVGIHSR 266 (359)
Q Consensus 192 ~~~~~~~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-----p~~i~~d~~G~lwv~~~~~ 266 (359)
......+.......+.+++++..+..+ +.++.+-++|+..... ...+.. +++ -..+.++|+|.+..+...+
T Consensus 333 ~~~~sv~~gg~vtSl~ls~~g~~lLss-sRDdtl~viDlRt~eI--~~~~sA-~g~k~asDwtrvvfSpd~~YvaAGS~d 408 (459)
T KOG0288|consen 333 DKTRSVPLGGRVTSLDLSMDGLELLSS-SRDDTLKVIDLRTKEI--RQTFSA-EGFKCASDWTRVVFSPDGSYVAAGSAD 408 (459)
T ss_pred ceeeEeecCcceeeEeeccCCeEEeee-cCCCceeeeecccccE--EEEeec-cccccccccceeEECCCCceeeeccCC
Confidence 444333333356778888888876666 6777899998754322 122221 111 2337889988766666555
Q ss_pred CCccccccccCC-ccceeeecCCcc
Q 018242 267 RKGISKLVLSFP-WIGNVLIKLPID 290 (359)
Q Consensus 267 ~~~~~~~~~~~~-~~g~~~~~~~~~ 290 (359)
+. ++++. .+||+.+.+..+
T Consensus 409 gs-----v~iW~v~tgKlE~~l~~s 428 (459)
T KOG0288|consen 409 GS-----VYIWSVFTGKLEKVLSLS 428 (459)
T ss_pred Cc-----EEEEEccCceEEEEeccC
Confidence 54 66655 367777666554
No 173
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=97.16 E-value=0.025 Score=56.24 Aligned_cols=156 Identities=17% Similarity=0.189 Sum_probs=95.6
Q ss_pred CceEEEccCCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEEeC
Q 018242 36 PESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIADA 115 (359)
Q Consensus 36 p~~i~~~~~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~~~ 115 (359)
...++++.+|..+.++..+-.|-.++.++..-.. .+........++.++| ++++.+...
T Consensus 99 ~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~--------------------~lrgh~apVl~l~~~p-~~~fLAvss 157 (933)
T KOG1274|consen 99 IRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEK--------------------VLRGHDAPVLQLSYDP-KGNFLAVSS 157 (933)
T ss_pred ceEEEEecCCcEEEeecCceeEEEEeccccchhe--------------------eecccCCceeeeeEcC-CCCEEEEEe
Confidence 3478899999966677777778888776642111 2223334457899999 666665544
Q ss_pred CC-cEEEEeCCCCeEEEEeecCC-C--cc-ccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCC
Q 018242 116 YF-GLLKVGPEGGLATAVATQSE-G--IP-FRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPAT 190 (359)
Q Consensus 116 ~~-~i~~~~~~~~~~~~~~~~~~-~--~~-~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~ 190 (359)
-+ .+..++..++......+... . .. ..-...+++.|+|.++.+. ...+.|..|++.+
T Consensus 158 ~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~------------------~~d~~Vkvy~r~~ 219 (933)
T KOG1274|consen 158 CDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVP------------------PVDNTVKVYSRKG 219 (933)
T ss_pred cCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEee------------------ccCCeEEEEccCC
Confidence 44 48888988776543222111 1 11 2234568999996634443 2245788888876
Q ss_pred CcEEEEe-CCC--CCCceEEEccCCCEEEEEecCCCEEEEEEcC
Q 018242 191 KQVTVLL-GNL--SFPNGVALSEDGNYILLAETTSCRILRYWLK 231 (359)
Q Consensus 191 ~~~~~~~-~~~--~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~ 231 (359)
.+..... ... ..-.-++|+|.|++ +.+.+.++.|.+||.+
T Consensus 220 we~~f~Lr~~~~ss~~~~~~wsPnG~Y-iAAs~~~g~I~vWnv~ 262 (933)
T KOG1274|consen 220 WELQFKLRDKLSSSKFSDLQWSPNGKY-IAASTLDGQILVWNVD 262 (933)
T ss_pred ceeheeecccccccceEEEEEcCCCcE-EeeeccCCcEEEEecc
Confidence 5443222 221 12457889999975 4555667899999976
No 174
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=97.16 E-value=0.026 Score=46.77 Aligned_cols=111 Identities=21% Similarity=0.273 Sum_probs=67.2
Q ss_pred CCcceEEEEecCCCeEEEEeCCCcEEEEeCCCCeEE-EEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceee
Q 018242 95 CGRPLGLCFNKTNGDLYIADAYFGLLKVGPEGGLAT-AVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISV 173 (359)
Q Consensus 95 ~~~p~gi~~~~~~g~l~v~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~ 173 (359)
.++-.|++.| +.+||+++...-++.-||++-... .+.-...+.|....|.+-+- ||. +|.-...
T Consensus 130 ~GeGWgLt~d--~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V-dG~-lyANVw~----------- 194 (262)
T COG3823 130 EGEGWGLTSD--DKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV-DGE-LYANVWQ----------- 194 (262)
T ss_pred CCcceeeecC--CcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeee-ccE-EEEeeee-----------
Confidence 3455677766 667998876656888888753211 11112344555666666432 454 5554322
Q ss_pred eeecCCCceEEEEeCCCCcEEEEeC-------------CCCCCceEEEccCCCEEEEEecCCCEEE
Q 018242 174 ILSGDKTGRLMKYDPATKQVTVLLG-------------NLSFPNGVALSEDGNYILLAETTSCRIL 226 (359)
Q Consensus 174 ~~~~~~~g~v~~~d~~~~~~~~~~~-------------~~~~p~gia~~~d~~~l~v~~~~~~~i~ 226 (359)
+-.|.+++|++|++..... ....+||||+++++..+|++...=..++
T Consensus 195 ------t~~I~rI~p~sGrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTGK~wp~lf 254 (262)
T COG3823 195 ------TTRIARIDPDSGRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITGKLWPLLF 254 (262)
T ss_pred ------ecceEEEcCCCCcEEEEEEccCCchhcCccccccccccceeecCcCCeEEEecCcCceeE
Confidence 1269999999988764321 1234689999999888999864433333
No 175
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=97.13 E-value=0.039 Score=50.73 Aligned_cols=139 Identities=17% Similarity=0.233 Sum_probs=69.2
Q ss_pred EEEEeCCCCeEEEEeecCC--CccccccceEEE--eC-CCCEEEEEeCCCccccccceeeeeecCCCce--EEEEe-CCC
Q 018242 119 LLKVGPEGGLATAVATQSE--GIPFRFCNSLDI--DQ-STGIIYFTDSSSQFQRRNHISVILSGDKTGR--LMKYD-PAT 190 (359)
Q Consensus 119 i~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~--d~-~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~--v~~~d-~~~ 190 (359)
++++++.++.++.+..... ......+.+++. ++ +|. +|+-... ..|. .|++. ...
T Consensus 131 ~f~id~~~g~L~~v~~~~~p~~~~~~e~yGlcly~~~~~g~-~ya~v~~----------------k~G~~~Qy~L~~~~~ 193 (381)
T PF02333_consen 131 LFRIDPDTGELTDVTDPAAPIATDLSEPYGLCLYRSPSTGA-LYAFVNG----------------KDGRVEQYELTDDGD 193 (381)
T ss_dssp EEEEETTTTEEEE-CBTTC-EE-SSSSEEEEEEEE-TTT---EEEEEEE----------------TTSEEEEEEEEE-TT
T ss_pred EEEecCCCCcceEcCCCCcccccccccceeeEEeecCCCCc-EEEEEec----------------CCceEEEEEEEeCCC
Confidence 7778888787765532111 012234667764 43 466 5554221 1222 22332 222
Q ss_pred CcEE----EEeCCCCCCceEEEccCCCEEEEEecCCCEEEEEEcCCCCCcceeEeec--CCCC---CCceEE--CCC--C
Q 018242 191 KQVT----VLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQ--LPGF---PDNIKR--SPR--G 257 (359)
Q Consensus 191 ~~~~----~~~~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~--~~~~---p~~i~~--d~~--G 257 (359)
+.+. +-......++|++.+.....||+++.. .+||+|+.++......+.+.. -..+ ..||++ ..+ |
T Consensus 194 g~v~~~lVR~f~~~sQ~EGCVVDDe~g~LYvgEE~-~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~g 272 (381)
T PF02333_consen 194 GKVSATLVREFKVGSQPEGCVVDDETGRLYVGEED-VGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKG 272 (381)
T ss_dssp SSEEEEEEEEEE-SS-EEEEEEETTTTEEEEEETT-TEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-E
T ss_pred CcEeeEEEEEecCCCcceEEEEecccCCEEEecCc-cEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCe
Confidence 3221 112234578999999888889999855 699999987654333333322 1112 345555 333 4
Q ss_pred CEEEEEecCCCccccccccCCcc
Q 018242 258 GFWVGIHSRRKGISKLVLSFPWI 280 (359)
Q Consensus 258 ~lwv~~~~~~~~~~~~~~~~~~~ 280 (359)
.|.+++.+.+. ..+|++.
T Consensus 273 YLivSsQG~~s-----f~Vy~r~ 290 (381)
T PF02333_consen 273 YLIVSSQGDNS-----FAVYDRE 290 (381)
T ss_dssp EEEEEEGGGTE-----EEEEESS
T ss_pred EEEEEcCCCCe-----EEEEecC
Confidence 56666666553 4555544
No 176
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=97.11 E-value=0.023 Score=52.82 Aligned_cols=191 Identities=12% Similarity=0.083 Sum_probs=104.7
Q ss_pred CCceEEEccCCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEEe
Q 018242 35 GPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIAD 114 (359)
Q Consensus 35 ~p~~i~~~~~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~~ 114 (359)
..+|++..+.-..+..+..++-+-.||......+.+ +........++.+...|-.|.-..
T Consensus 81 ~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~hr~--------------------lkdh~stvt~v~YN~~DeyiAsvs 140 (673)
T KOG4378|consen 81 NAFCVACASQSLYEISGGQSGCVKIWDLRAKLIHRF--------------------LKDHQSTVTYVDYNNTDEYIASVS 140 (673)
T ss_pred hHHHHhhhhcceeeeccCcCceeeehhhHHHHHhhh--------------------ccCCcceeEEEEecCCcceeEEec
Confidence 344555554444222333346777899875322222 122234466777776333333333
Q ss_pred CCCcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCCcEE
Q 018242 115 AYFGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQVT 194 (359)
Q Consensus 115 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~ 194 (359)
..+.|..-...++....-.....+ ..+.-+..++-.+++..+. +..|.|..||..+..-.
T Consensus 141 ~gGdiiih~~~t~~~tt~f~~~sg---qsvRll~ys~skr~lL~~a-----------------sd~G~VtlwDv~g~sp~ 200 (673)
T KOG4378|consen 141 DGGDIIIHGTKTKQKTTTFTIDSG---QSVRLLRYSPSKRFLLSIA-----------------SDKGAVTLWDVQGMSPI 200 (673)
T ss_pred cCCcEEEEecccCccccceecCCC---CeEEEeecccccceeeEee-----------------ccCCeEEEEeccCCCcc
Confidence 334477766666543221111111 1233456666666444441 23578889998743322
Q ss_pred EE--eCCCCCCceEEEccCCCEEEEEecCCCEEEEEEcCCCCCcceeEeecCCCCCCceEECCCCCEEEEEecCCC
Q 018242 195 VL--LGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGGFWVGIHSRRK 268 (359)
Q Consensus 195 ~~--~~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lwv~~~~~~~ 268 (359)
.- ..+-....||+|+|.+..|+++--.+.+|+.||.......+.-.+.. -...+++.++|.+.++....+.
T Consensus 201 ~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~y~~---Plstvaf~~~G~~L~aG~s~G~ 273 (673)
T KOG4378|consen 201 FHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLTYSH---PLSTVAFSECGTYLCAGNSKGE 273 (673)
T ss_pred cchhhhccCCcCcceecCCccceEEEecccceEEEeecccccccceeeecC---CcceeeecCCceEEEeecCCce
Confidence 11 12223357999999888899998889999999976443333222222 1245888889977766555554
No 177
>PF05787 DUF839: Bacterial protein of unknown function (DUF839); InterPro: IPR008557 This family consists of bacterial proteins of unknown function.
Probab=97.07 E-value=0.011 Score=57.20 Aligned_cols=121 Identities=15% Similarity=0.249 Sum_probs=67.2
Q ss_pred CCCCCceEEEccCCCeeEEe-cCC-------------------CEEEEEEcCCc-------ceEEEeecCCCCCCCCCCc
Q 018242 32 GAIGPESLAFDALGEGPYTG-VSD-------------------GRIIKWHQDQR-------RWLHFARTSPNRDGCEGAY 84 (359)
Q Consensus 32 ~~~~p~~i~~~~~G~~l~~~-~~~-------------------~~i~~~d~~~~-------~~~~~~~~~~~~~~~~~~~ 84 (359)
++..||+|.+++....+|++ +++ |.|++|++.++ .|..+..............
T Consensus 348 ~f~RpEgi~~~p~~g~vY~a~T~~~~r~~~~~~~~n~~~~n~~G~I~r~~~~~~d~~~~~f~~~~~~~~g~~~~~~~~~~ 427 (524)
T PF05787_consen 348 PFDRPEGITVNPDDGEVYFALTNNSGRGESDVDAANPRAGNGYGQIYRYDPDGNDHAATTFTWELFLVGGDPTDASGNGS 427 (524)
T ss_pred cccCccCeeEeCCCCEEEEEEecCCCCcccccccCCcccCCcccEEEEecccCCccccceeEEEEEEEecCccccccccc
Confidence 58899999999863336654 332 48999998765 4444433211000000000
Q ss_pred ccccccccccCCcceEEEEecCCCeEEEEeCCCc-------------EEE-----------EeCCCCeEEEEeecCCCcc
Q 018242 85 EYDHAAKEHICGRPLGLCFNKTNGDLYIADAYFG-------------LLK-----------VGPEGGLATAVATQSEGIP 140 (359)
Q Consensus 85 ~~~~~~~~~~~~~p~gi~~~~~~g~l~v~~~~~~-------------i~~-----------~~~~~~~~~~~~~~~~~~~ 140 (359)
+ .........|..|+|++ +|+|||+..... ++. .++.+++++++.... .
T Consensus 428 ~---~~~~~~f~sPDNL~~d~-~G~LwI~eD~~~~~~~l~g~t~~G~~~~~~~~~G~~~~~~~~~~g~~~rf~~~P---~ 500 (524)
T PF05787_consen 428 N---KCDDNGFASPDNLAFDP-DGNLWIQEDGGGSNNNLPGVTPDGEVYDFARNDGNNVWAYDPDTGELKRFLVGP---N 500 (524)
T ss_pred C---cccCCCcCCCCceEECC-CCCEEEEeCCCCCCcccccccccCceeeeeecccceeeeccccccceeeeccCC---C
Confidence 0 01122335688999999 899999954321 111 123334444433211 2
Q ss_pred ccccceEEEeCCCCEEEEE
Q 018242 141 FRFCNSLDIDQSTGIIYFT 159 (359)
Q Consensus 141 ~~~~~~l~~d~~g~~l~v~ 159 (359)
...+.+++++|||++||+.
T Consensus 501 gaE~tG~~fspDg~tlFvn 519 (524)
T PF05787_consen 501 GAEITGPCFSPDGRTLFVN 519 (524)
T ss_pred CcccccceECCCCCEEEEE
Confidence 2345678899999977776
No 178
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=97.07 E-value=0.19 Score=44.35 Aligned_cols=32 Identities=13% Similarity=0.184 Sum_probs=24.5
Q ss_pred CCCCCCceEEEccCCCeeEEecC-CCEEEEEEcC
Q 018242 31 EGAIGPESLAFDALGEGPYTGVS-DGRIIKWHQD 63 (359)
Q Consensus 31 ~~~~~p~~i~~~~~G~~l~~~~~-~~~i~~~d~~ 63 (359)
+.+..|++|++.|.|. +|++.. .+....||.+
T Consensus 20 p~L~N~WGia~~p~~~-~WVadngT~~~TlYdg~ 52 (336)
T TIGR03118 20 PGLRNAWGLSYRPGGP-FWVANTGTGTATLYVGN 52 (336)
T ss_pred ccccccceeEecCCCC-EEEecCCcceEEeecCC
Confidence 4688999999999998 776654 4666677765
No 179
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=97.06 E-value=0.012 Score=51.37 Aligned_cols=161 Identities=11% Similarity=0.070 Sum_probs=100.8
Q ss_pred CCCceEEEccCCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEE
Q 018242 34 IGPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIA 113 (359)
Q Consensus 34 ~~p~~i~~~~~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~ 113 (359)
..-.++.|.|...+|..+..++.|-.+|......+. ..+.-........|.|.|.+.-|.++
T Consensus 173 devn~l~FHPre~ILiS~srD~tvKlFDfsK~saKr------------------A~K~~qd~~~vrsiSfHPsGefllvg 234 (430)
T KOG0640|consen 173 DEVNDLDFHPRETILISGSRDNTVKLFDFSKTSAKR------------------AFKVFQDTEPVRSISFHPSGEFLLVG 234 (430)
T ss_pred CcccceeecchhheEEeccCCCeEEEEecccHHHHH------------------HHHHhhccceeeeEeecCCCceEEEe
Confidence 345588899998888888888988888864321110 00111111235688999955556666
Q ss_pred eCCCcEEEEeCCCCeEEEEeecCC-CccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCCc
Q 018242 114 DAYFGLLKVGPEGGLATAVATQSE-GIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQ 192 (359)
Q Consensus 114 ~~~~~i~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~ 192 (359)
+...-+..||.++-+- +....+ .+....++.+..++.|+ ||++- +..|.|-.||.-+++
T Consensus 235 TdHp~~rlYdv~T~Qc--fvsanPd~qht~ai~~V~Ys~t~~-lYvTa-----------------SkDG~IklwDGVS~r 294 (430)
T KOG0640|consen 235 TDHPTLRLYDVNTYQC--FVSANPDDQHTGAITQVRYSSTGS-LYVTA-----------------SKDGAIKLWDGVSNR 294 (430)
T ss_pred cCCCceeEEeccceeE--eeecCcccccccceeEEEecCCcc-EEEEe-----------------ccCCcEEeeccccHH
Confidence 6555677788887653 333222 22334678888999999 99993 457888889876655
Q ss_pred EEEE---eCCCCCCceEEEccCCCEEEEEecCCCEEEEEEcCCC
Q 018242 193 VTVL---LGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTS 233 (359)
Q Consensus 193 ~~~~---~~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~ 233 (359)
.... .++....-...|++++++++-++ .+..+..|.+..+
T Consensus 295 Cv~t~~~AH~gsevcSa~Ftkn~kyiLsSG-~DS~vkLWEi~t~ 337 (430)
T KOG0640|consen 295 CVRTIGNAHGGSEVCSAVFTKNGKYILSSG-KDSTVKLWEISTG 337 (430)
T ss_pred HHHHHHhhcCCceeeeEEEccCCeEEeecC-CcceeeeeeecCC
Confidence 4322 13344455667888998655444 3456777776543
No 180
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=97.05 E-value=0.01 Score=53.68 Aligned_cols=179 Identities=15% Similarity=0.168 Sum_probs=108.0
Q ss_pred eEEEccCCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEEeCCC
Q 018242 38 SLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIADAYF 117 (359)
Q Consensus 38 ~i~~~~~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~~~~~ 117 (359)
.+.+.|+|++|.+++..|....||..+=.|+++ .........++.++. ++...|+...+
T Consensus 101 ~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEti--------------------lQaHDs~Vr~m~ws~-~g~wmiSgD~g 159 (464)
T KOG0284|consen 101 VVRWTPEGRRLLTGSQSGEFTLWNGTSFNFETI--------------------LQAHDSPVRTMKWSH-NGTWMISGDKG 159 (464)
T ss_pred eEEEcCCCceeEeecccccEEEecCceeeHHHH--------------------hhhhcccceeEEEcc-CCCEEEEcCCC
Confidence 678999999999999999999998744222221 112223356888888 67766665555
Q ss_pred cEEE-EeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCCc-EEE
Q 018242 118 GLLK-VGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQ-VTV 195 (359)
Q Consensus 118 ~i~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~-~~~ 195 (359)
|.++ +++.-..++.+. ......+.+++++|+.. .|++-+. .+.|..+|..-.+ ...
T Consensus 160 G~iKyWqpnmnnVk~~~----ahh~eaIRdlafSpnDs-kF~t~Sd-----------------Dg~ikiWdf~~~kee~v 217 (464)
T KOG0284|consen 160 GMIKYWQPNMNNVKIIQ----AHHAEAIRDLAFSPNDS-KFLTCSD-----------------DGTIKIWDFRMPKEERV 217 (464)
T ss_pred ceEEecccchhhhHHhh----HhhhhhhheeccCCCCc-eeEEecC-----------------CCeEEEEeccCCchhhe
Confidence 6554 455433332211 11224678899999888 7887432 4566666653222 223
Q ss_pred EeCCCCCCceEEEccCCCEEEEEecCCCEEEEEEcCCCCCcceeEeecCCC---CCCceEECCCCCEEEEEec
Q 018242 196 LLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPG---FPDNIKRSPRGGFWVGIHS 265 (359)
Q Consensus 196 ~~~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~---~p~~i~~d~~G~lwv~~~~ 265 (359)
+..+..-+..+.+.|... |+++.+.++.|..||..... .+..+.+ ..-++.+.++|++..+...
T Consensus 218 L~GHgwdVksvdWHP~kg-LiasgskDnlVKlWDprSg~-----cl~tlh~HKntVl~~~f~~n~N~Llt~sk 284 (464)
T KOG0284|consen 218 LRGHGWDVKSVDWHPTKG-LIASGSKDNLVKLWDPRSGS-----CLATLHGHKNTVLAVKFNPNGNWLLTGSK 284 (464)
T ss_pred eccCCCCcceeccCCccc-eeEEccCCceeEeecCCCcc-----hhhhhhhccceEEEEEEcCCCCeeEEccC
Confidence 345556678888888654 78888888888888854331 1111111 1234666777765554443
No 181
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=97.05 E-value=0.0012 Score=36.25 Aligned_cols=27 Identities=37% Similarity=0.802 Sum_probs=23.7
Q ss_pred CCCceEEEccCCCEEEEEecCCCEEEEE
Q 018242 201 SFPNGVALSEDGNYILLAETTSCRILRY 228 (359)
Q Consensus 201 ~~p~gia~~~d~~~l~v~~~~~~~i~~~ 228 (359)
..|.|++++++|+ +||+++.+++|.+|
T Consensus 2 ~~P~gvav~~~g~-i~VaD~~n~rV~vf 28 (28)
T PF01436_consen 2 NYPHGVAVDSDGN-IYVADSGNHRVQVF 28 (28)
T ss_dssp SSEEEEEEETTSE-EEEEECCCTEEEEE
T ss_pred cCCcEEEEeCCCC-EEEEECCCCEEEEC
Confidence 4689999997775 99999999999876
No 182
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.04 E-value=0.18 Score=43.44 Aligned_cols=108 Identities=13% Similarity=0.082 Sum_probs=63.2
Q ss_pred CCeeEEecCCCEEEEEEcCCcc-eEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEEeCCCcEEEEe
Q 018242 45 GEGPYTGVSDGRIIKWHQDQRR-WLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIADAYFGLLKVG 123 (359)
Q Consensus 45 G~~l~~~~~~~~i~~~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~~~~~~i~~~~ 123 (359)
|+.++++...+++|.++-++++ ...|.. .....- .-..|.+.|-+|.+...+..+.+|
T Consensus 63 gdfVV~GCy~g~lYfl~~~tGs~~w~f~~------------------~~~vk~---~a~~d~~~glIycgshd~~~yalD 121 (354)
T KOG4649|consen 63 GDFVVLGCYSGGLYFLCVKTGSQIWNFVI------------------LETVKV---RAQCDFDGGLIYCGSHDGNFYALD 121 (354)
T ss_pred CCEEEEEEccCcEEEEEecchhheeeeee------------------hhhhcc---ceEEcCCCceEEEecCCCcEEEec
Confidence 4456677788888888888773 222211 111111 122455578889888777789999
Q ss_pred CCCCeEEEEeecCCCccccccceEEEeC-CCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCCcEEEE
Q 018242 124 PEGGLATAVATQSEGIPFRFCNSLDIDQ-STGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQVTVL 196 (359)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~l~~d~-~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~ 196 (359)
+++..-. +.....+.-+.. =++++ ++. ||++. ..|.|...++++.....+
T Consensus 122 ~~~~~cV-ykskcgG~~f~s---P~i~~g~~s-ly~a~------------------t~G~vlavt~~~~~~~~~ 172 (354)
T KOG4649|consen 122 PKTYGCV-YKSKCGGGTFVS---PVIAPGDGS-LYAAI------------------TAGAVLAVTKNPYSSTEF 172 (354)
T ss_pred ccccceE-EecccCCceecc---ceecCCCce-EEEEe------------------ccceEEEEccCCCCccee
Confidence 8865432 222223222222 25666 676 99993 356788888876644433
No 183
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=97.03 E-value=0.13 Score=45.08 Aligned_cols=150 Identities=14% Similarity=0.187 Sum_probs=92.9
Q ss_pred CCCceEEEccCCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEE
Q 018242 34 IGPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIA 113 (359)
Q Consensus 34 ~~p~~i~~~~~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~ 113 (359)
.+-..+.+++.+..|.++..+|.+..|+....+.+. .+. ........+|.+ +.++|++
T Consensus 14 d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~--------------------~~~-~~~plL~c~F~d-~~~~~~G 71 (323)
T KOG1036|consen 14 DGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKL--------------------KFK-HGAPLLDCAFAD-ESTIVTG 71 (323)
T ss_pred hceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhh--------------------hee-cCCceeeeeccC-CceEEEe
Confidence 344678888877668899999999999987653221 111 112235667776 8899999
Q ss_pred eCCCcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCCcE
Q 018242 114 DAYFGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQV 193 (359)
Q Consensus 114 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~ 193 (359)
+..+.|.++|..++....+.... ..+..|...+.-+ ..|+ +++...|-.||+...
T Consensus 72 ~~dg~vr~~Dln~~~~~~igth~-----~~i~ci~~~~~~~-~vIs-----------------gsWD~~ik~wD~R~~-- 126 (323)
T KOG1036|consen 72 GLDGQVRRYDLNTGNEDQIGTHD-----EGIRCIEYSYEVG-CVIS-----------------GSWDKTIKFWDPRNK-- 126 (323)
T ss_pred ccCceEEEEEecCCcceeeccCC-----CceEEEEeeccCC-eEEE-----------------cccCccEEEEecccc--
Confidence 87778999999998765543311 1222333333333 4455 356678999998641
Q ss_pred EEEeCCCCCCc-eEEEccCCCEEEEEecCCCEEEEEEcCC
Q 018242 194 TVLLGNLSFPN-GVALSEDGNYILLAETTSCRILRYWLKT 232 (359)
Q Consensus 194 ~~~~~~~~~p~-gia~~~d~~~l~v~~~~~~~i~~~~~~~ 232 (359)
........+. -.+++-.++.|+|.. .+.++..||+..
T Consensus 127 -~~~~~~d~~kkVy~~~v~g~~LvVg~-~~r~v~iyDLRn 164 (323)
T KOG1036|consen 127 -VVVGTFDQGKKVYCMDVSGNRLVVGT-SDRKVLIYDLRN 164 (323)
T ss_pred -ccccccccCceEEEEeccCCEEEEee-cCceEEEEEccc
Confidence 1122222222 335566666666654 556899999853
No 184
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.02 E-value=0.28 Score=46.65 Aligned_cols=189 Identities=11% Similarity=0.006 Sum_probs=107.8
Q ss_pred CCCCceEEEccCCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEE
Q 018242 33 AIGPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYI 112 (359)
Q Consensus 33 ~~~p~~i~~~~~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v 112 (359)
-....++.++++|..|.+++.+|.+..||....+-.. .+.. .+..+--++.- ++.++.
T Consensus 217 ~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~--------------------~~~~-~h~~rvg~laW-~~~~ls 274 (484)
T KOG0305|consen 217 EELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTR--------------------TLRG-SHASRVGSLAW-NSSVLS 274 (484)
T ss_pred CCceEEEEECCCCCEEEEeecCCeEEEEehhhccccc--------------------cccC-CcCceeEEEec-cCceEE
Confidence 5788899999999989999999999999987542110 1111 02222223333 345555
Q ss_pred EeCCC-cEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCC
Q 018242 113 ADAYF-GLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATK 191 (359)
Q Consensus 113 ~~~~~-~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~ 191 (359)
+.... .|..+|....+. ......+ .-..+.++.+.+|++ ...+ ++.++.+..+|..+.
T Consensus 275 sGsr~~~I~~~dvR~~~~--~~~~~~~-H~qeVCgLkws~d~~-~lAS-----------------GgnDN~~~Iwd~~~~ 333 (484)
T KOG0305|consen 275 SGSRDGKILNHDVRISQH--VVSTLQG-HRQEVCGLKWSPDGN-QLAS-----------------GGNDNVVFIWDGLSP 333 (484)
T ss_pred EecCCCcEEEEEEecchh--hhhhhhc-ccceeeeeEECCCCC-eecc-----------------CCCccceEeccCCCc
Confidence 43333 477766654331 1110111 113567899999998 3333 234567888887432
Q ss_pred c-EEEEeCCCCCCceEEEccCCCEEEEEecC--CCEEEEEEcCCCCCcceeEeecCCCCCCceEECCCCCEEEEEecCC
Q 018242 192 Q-VTVLLGNLSFPNGVALSEDGNYILLAETT--SCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGGFWVGIHSRR 267 (359)
Q Consensus 192 ~-~~~~~~~~~~p~gia~~~d~~~l~v~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lwv~~~~~~ 267 (359)
. ...+.........++++|-...|+.++.. +.+|.-|+.... ....-..-.....++.+.+..+=.+++.+..
T Consensus 334 ~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g---~~i~~vdtgsQVcsL~Wsk~~kEi~sthG~s 409 (484)
T KOG0305|consen 334 EPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTG---ARIDSVDTGSQVCSLIWSKKYKELLSTHGYS 409 (484)
T ss_pred cccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCC---cEecccccCCceeeEEEcCCCCEEEEecCCC
Confidence 2 22344555667789999865556665443 356666765432 1111111233456788888876666666543
No 185
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=97.01 E-value=0.33 Score=45.99 Aligned_cols=110 Identities=19% Similarity=0.163 Sum_probs=65.0
Q ss_pred EEEecCCCeEEEEeCCC---cEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeec
Q 018242 101 LCFNKTNGDLYIADAYF---GLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSG 177 (359)
Q Consensus 101 i~~~~~~g~l~v~~~~~---~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~ 177 (359)
..++|++..|.++...+ .|+.+|..++..+.+ ....+ ... .=.++|||++|+++...
T Consensus 243 P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~~~L-t~~~g--i~~--~Ps~spdG~~ivf~Sdr--------------- 302 (425)
T COG0823 243 PAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNLPRL-TNGFG--INT--SPSWSPDGSKIVFTSDR--------------- 302 (425)
T ss_pred ccCCCCCCEEEEEECCCCCccEEEEcCCCCcceec-ccCCc--ccc--CccCCCCCCEEEEEeCC---------------
Confidence 34777556666664443 499999988875443 21111 111 22678999977777332
Q ss_pred CCCceEEEEeCCCCcEEEEeCCCCCCceEEEccCCCEEEEEecCCCE--EEEEEc
Q 018242 178 DKTGRLMKYDPATKQVTVLLGNLSFPNGVALSEDGNYILLAETTSCR--ILRYWL 230 (359)
Q Consensus 178 ~~~g~v~~~d~~~~~~~~~~~~~~~p~gia~~~d~~~l~v~~~~~~~--i~~~~~ 230 (359)
...-.|++++++++..+.+........--.++|||+.+.+.....+. |..+++
T Consensus 303 ~G~p~I~~~~~~g~~~~riT~~~~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~ 357 (425)
T COG0823 303 GGRPQIYLYDLEGSQVTRLTFSGGGNSNPVWSPDGDKIVFESSSGGQWDIDKNDL 357 (425)
T ss_pred CCCcceEEECCCCCceeEeeccCCCCcCccCCCCCCEEEEEeccCCceeeEEecc
Confidence 12236999999988776654443333345678999976665543344 444444
No 186
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=97.01 E-value=0.17 Score=46.64 Aligned_cols=141 Identities=23% Similarity=0.320 Sum_probs=74.3
Q ss_pred CCeEEEE-eCCCcEEEEeCCCCeEEEEeecCCCccccccceEEEe----CCCCEE---EEEeCCCccccccceeeeeecC
Q 018242 107 NGDLYIA-DAYFGLLKVGPEGGLATAVATQSEGIPFRFCNSLDID----QSTGII---YFTDSSSQFQRRNHISVILSGD 178 (359)
Q Consensus 107 ~g~l~v~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d----~~g~~l---~v~d~~~~~~~~~~~~~~~~~~ 178 (359)
...++++ +...||+.||+++++++.+.. ..+|.+.+- -+|+.+ .+++... +.
T Consensus 67 ~kSlIigTdK~~GL~VYdL~Gk~lq~~~~-------Gr~NNVDvrygf~l~g~~vDlavas~R~~-------------g~ 126 (381)
T PF02333_consen 67 AKSLIIGTDKKGGLYVYDLDGKELQSLPV-------GRPNNVDVRYGFPLNGKTVDLAVASDRSD-------------GR 126 (381)
T ss_dssp GG-EEEEEETTTEEEEEETTS-EEEEE-S-------S-EEEEEEEEEEEETTEEEEEEEEEE-CC-------------CT
T ss_pred ccceEEEEeCCCCEEEEcCCCcEEEeecC-------CCcceeeeecceecCCceEEEEEEecCcC-------------CC
Confidence 3445555 555689999999888765521 122332211 133321 2222110 01
Q ss_pred CCceEEEEeCCCCcEEEEe-------CCCCCCceEEEcc---CCCEEEEEecCCCEEEEEEcCCCCCcc--eeEeec--C
Q 018242 179 KTGRLMKYDPATKQVTVLL-------GNLSFPNGVALSE---DGNYILLAETTSCRILRYWLKTSKAGT--IEIVAQ--L 244 (359)
Q Consensus 179 ~~g~v~~~d~~~~~~~~~~-------~~~~~p~gia~~~---d~~~l~v~~~~~~~i~~~~~~~~~~~~--~~~~~~--~ 244 (359)
..-++|.+|+.++.+..+. .....|.|+|+.. +|+...+....++.+..|.+.....+. .+.+.+ +
T Consensus 127 n~l~~f~id~~~g~L~~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~ 206 (381)
T PF02333_consen 127 NSLRLFRIDPDTGELTDVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKV 206 (381)
T ss_dssp -EEEEEEEETTTTEEEE-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE-
T ss_pred CeEEEEEecCCCCcceEcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecC
Confidence 1236999998877776542 2234578999964 355333334456789998886332222 122222 4
Q ss_pred CCCCCceEECC-CCCEEEEEecCC
Q 018242 245 PGFPDNIKRSP-RGGFWVGIHSRR 267 (359)
Q Consensus 245 ~~~p~~i~~d~-~G~lwv~~~~~~ 267 (359)
++.+.++++|. .|.||++....+
T Consensus 207 ~sQ~EGCVVDDe~g~LYvgEE~~G 230 (381)
T PF02333_consen 207 GSQPEGCVVDDETGRLYVGEEDVG 230 (381)
T ss_dssp SS-EEEEEEETTTTEEEEEETTTE
T ss_pred CCcceEEEEecccCCEEEecCccE
Confidence 55688999976 578999987754
No 187
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=97.00 E-value=0.12 Score=47.18 Aligned_cols=130 Identities=19% Similarity=0.213 Sum_probs=72.4
Q ss_pred ceEEEEecCCCeEEEEeCCC-------cEEEEeCCCCeEEEEe-e-cC-------C-CccccccceEEEeCCCCEEEEEe
Q 018242 98 PLGLCFNKTNGDLYIADAYF-------GLLKVGPEGGLATAVA-T-QS-------E-GIPFRFCNSLDIDQSTGIIYFTD 160 (359)
Q Consensus 98 p~gi~~~~~~g~l~v~~~~~-------~i~~~~~~~~~~~~~~-~-~~-------~-~~~~~~~~~l~~d~~g~~l~v~d 160 (359)
+-+|++.+ ++.+||++.+. .|++++.++...+.+. . .. . ......+.+|++.++|++||++.
T Consensus 87 ~Egi~~~~-~g~~~is~E~~~~~~~~p~I~~~~~~G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~ 165 (326)
T PF13449_consen 87 PEGIAVPP-DGSFWISSEGGRTGGIPPRIRRFDLDGRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAM 165 (326)
T ss_pred hhHeEEec-CCCEEEEeCCccCCCCCCEEEEECCCCcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEE
Confidence 44899955 99999997644 5999998844333331 1 11 1 12345678899999999888884
Q ss_pred CCCccccccceeeeeecCCCceEEEEeCCCCc--EEEE---eC------CCCCCceEEEccCCCEEEEEecC-------C
Q 018242 161 SSSQFQRRNHISVILSGDKTGRLMKYDPATKQ--VTVL---LG------NLSFPNGVALSEDGNYILLAETT-------S 222 (359)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~--~~~~---~~------~~~~p~gia~~~d~~~l~v~~~~-------~ 222 (359)
-+.-..... .... .....-.++.+|+.+.. ...+ .. ....+..++.-++++ +++.+.. .
T Consensus 166 E~~l~~d~~-~~~~-~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~-lLvLER~~~~~~~~~ 242 (326)
T PF13449_consen 166 ESPLKQDGP-RANP-DNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGR-LLVLERDFSPGTGNY 242 (326)
T ss_pred CccccCCCc-cccc-ccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCc-EEEEEccCCCCccce
Confidence 332110000 0000 00112468889887521 2221 11 233455666667776 7887776 2
Q ss_pred CEEEEEEcC
Q 018242 223 CRILRYWLK 231 (359)
Q Consensus 223 ~~i~~~~~~ 231 (359)
.+|+++++.
T Consensus 243 ~ri~~v~l~ 251 (326)
T PF13449_consen 243 KRIYRVDLS 251 (326)
T ss_pred EEEEEEEcc
Confidence 355666553
No 188
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=97.00 E-value=0.4 Score=46.92 Aligned_cols=217 Identities=14% Similarity=0.104 Sum_probs=119.4
Q ss_pred eEEEccCCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEE-ecCCCeEEEEeCC
Q 018242 38 SLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCF-NKTNGDLYIADAY 116 (359)
Q Consensus 38 ~i~~~~~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~-~~~~g~l~v~~~~ 116 (359)
.+.....++ +..-+.+..+..||.++.+... .+.....+...|.+ .+++..|.|++..
T Consensus 287 ~~~~~~~~~-~l~vtaeQnl~l~d~~~l~i~k--------------------~ivG~ndEI~Dm~~lG~e~~~laVATNs 345 (775)
T KOG0319|consen 287 LLAIESMSQ-LLLVTAEQNLFLYDEDELTIVK--------------------QIVGYNDEILDMKFLGPEESHLAVATNS 345 (775)
T ss_pred ceeccccCc-eEEEEccceEEEEEccccEEeh--------------------hhcCCchhheeeeecCCccceEEEEeCC
Confidence 444445566 5554555678888776642211 22333334455554 3557889998766
Q ss_pred CcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCCcEEEE
Q 018242 117 FGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQVTVL 196 (359)
Q Consensus 117 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~ 196 (359)
..+..|+..+-.-..+... ...+..+.+..+|- +.++-+. .....+|+++.+..+...+
T Consensus 346 ~~lr~y~~~~~~c~ii~GH-----~e~vlSL~~~~~g~-llat~sK---------------D~svilWr~~~~~~~~~~~ 404 (775)
T KOG0319|consen 346 PELRLYTLPTSYCQIIPGH-----TEAVLSLDVWSSGD-LLATGSK---------------DKSVILWRLNNNCSKSLCV 404 (775)
T ss_pred CceEEEecCCCceEEEeCc-----hhheeeeeecccCc-EEEEecC---------------CceEEEEEecCCcchhhhh
Confidence 6677777766554433221 12445566556674 4444221 2234577775443332222
Q ss_pred e---CCCCCCceEEEccCCCEEEEEecCCCEEEEEEcCCCCCcceeEeec-------CCCCCCceEECCCCCEEEEEecC
Q 018242 197 L---GNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQ-------LPGFPDNIKRSPRGGFWVGIHSR 266 (359)
Q Consensus 197 ~---~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~-------~~~~p~~i~~d~~G~lwv~~~~~ 266 (359)
. .+....-+++++..+.-.+++.+.+.++..|++...+.+....... ...-.+++++.++..|..+....
T Consensus 405 a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqD 484 (775)
T KOG0319|consen 405 AQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQD 484 (775)
T ss_pred hhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccc
Confidence 1 2233456788877777789999999999999986532222221111 11236779999888888766554
Q ss_pred CCccccccccCCccceeeecCCccceeeeeeccc
Q 018242 267 RKGISKLVLSFPWIGNVLIKLPIDIVKIHSSLVK 300 (359)
Q Consensus 267 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 300 (359)
.. ..+..++ +..++..+..+-..+-++-|+
T Consensus 485 kt---aKiW~le-~~~l~~vLsGH~RGvw~V~Fs 514 (775)
T KOG0319|consen 485 KT---AKIWDLE-QLRLLGVLSGHTRGVWCVSFS 514 (775)
T ss_pred cc---eeeeccc-CceEEEEeeCCccceEEEEec
Confidence 42 0122223 666666665554444443333
No 189
>TIGR03032 conserved hypothetical protein TIGR03032. This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.
Probab=97.00 E-value=0.049 Score=48.29 Aligned_cols=142 Identities=15% Similarity=0.207 Sum_probs=82.3
Q ss_pred CCCCceEEEccCCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccC--C--cceEEEEecCCC
Q 018242 33 AIGPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHIC--G--RPLGLCFNKTNG 108 (359)
Q Consensus 33 ~~~p~~i~~~~~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~--~p~gi~~~~~~g 108 (359)
--..+.|++ .++.++++.+.-.=+..+++.-. |...=+|+ .+.... . -.+|+++.. +.
T Consensus 102 didiHdia~-~~~~l~fVNT~fSCLatl~~~~S-F~P~WkPp---------------FIs~la~eDRCHLNGlA~~~-g~ 163 (335)
T TIGR03032 102 DIDAHDLAL-GAGRLLFVNTLFSCLATVSPDYS-FVPLWKPP---------------FISKLAPEDRCHLNGMALDD-GE 163 (335)
T ss_pred Ccchhheee-cCCcEEEEECcceeEEEECCCCc-cccccCCc---------------cccccCccCceeecceeeeC-Ce
Confidence 346678888 56665777777666777766532 22110000 111110 1 134777764 44
Q ss_pred eEEEEeC-------------CCcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeee
Q 018242 109 DLYIADA-------------YFGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVIL 175 (359)
Q Consensus 109 ~l~v~~~-------------~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~ 175 (359)
--||+.- .+|=+.+|..++++ +.. ....|++-.+. +|+ ||+.|++
T Consensus 164 p~yVTa~~~sD~~~gWR~~~~~gG~vidv~s~ev--l~~-----GLsmPhSPRWh-dgr-Lwvldsg------------- 221 (335)
T TIGR03032 164 PRYVTALSQSDVADGWREGRRDGGCVIDIPSGEV--VAS-----GLSMPHSPRWY-QGK-LWLLNSG------------- 221 (335)
T ss_pred EEEEEEeeccCCcccccccccCCeEEEEeCCCCE--EEc-----CccCCcCCcEe-CCe-EEEEECC-------------
Confidence 4555421 11223355555543 222 22345554553 577 9999876
Q ss_pred ecCCCceEEEEeCCCCcEEEEeCCCCCCceEEEccCCCEEEEEec
Q 018242 176 SGDKTGRLMKYDPATKQVTVLLGNLSFPNGVALSEDGNYILLAET 220 (359)
Q Consensus 176 ~~~~~g~v~~~d~~~~~~~~~~~~~~~p~gia~~~d~~~l~v~~~ 220 (359)
.|.|.++|+++|+.+.+..-...|.|++|. |+.++|+.+
T Consensus 222 ----tGev~~vD~~~G~~e~Va~vpG~~rGL~f~--G~llvVgmS 260 (335)
T TIGR03032 222 ----RGELGYVDPQAGKFQPVAFLPGFTRGLAFA--GDFAFVGLS 260 (335)
T ss_pred ----CCEEEEEcCCCCcEEEEEECCCCCccccee--CCEEEEEec
Confidence 578999999988888876555678999997 777777654
No 190
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=96.98 E-value=0.11 Score=47.99 Aligned_cols=165 Identities=18% Similarity=0.198 Sum_probs=94.7
Q ss_pred CCCCceEEEccCCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEec--CCCeE
Q 018242 33 AIGPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNK--TNGDL 110 (359)
Q Consensus 33 ~~~p~~i~~~~~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~--~~g~l 110 (359)
++.-.++.|..||..++++..+|.|..|...+- +. ..+.+ .|. +...+....-....+.++. .+.++
T Consensus 123 YQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~l-v~---a~~~~-----~~~--p~~~f~~HtlsITDl~ig~Gg~~~rl 191 (476)
T KOG0646|consen 123 YQSITCLKFSDDGSHIITGSKDGAVLVWLLTDL-VS---ADNDH-----SVK--PLHIFSDHTLSITDLQIGSGGTNARL 191 (476)
T ss_pred ccceeEEEEeCCCcEEEecCCCccEEEEEEEee-cc---cccCC-----Ccc--ceeeeccCcceeEEEEecCCCccceE
Confidence 556679999999998888999999999976431 10 00000 000 0001111111122333332 25667
Q ss_pred EEEeCCCcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCC
Q 018242 111 YIADAYFGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPAT 190 (359)
Q Consensus 111 ~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~ 190 (359)
|.+...+.+..+|...+.+-.-.. .+ ..++.+++||-++++|++.. .|+|+..+...
T Consensus 192 ~TaS~D~t~k~wdlS~g~LLlti~-fp----~si~av~lDpae~~~yiGt~------------------~G~I~~~~~~~ 248 (476)
T KOG0646|consen 192 YTASEDRTIKLWDLSLGVLLLTIT-FP----SSIKAVALDPAERVVYIGTE------------------EGKIFQNLLFK 248 (476)
T ss_pred EEecCCceEEEEEeccceeeEEEe-cC----CcceeEEEcccccEEEecCC------------------cceEEeeehhc
Confidence 776655567778888776422111 11 35778999999998999843 34444433211
Q ss_pred -----------------CcEEEEeCCC--CCCceEEEccCCCEEEEEecCCCEEEEEEcCC
Q 018242 191 -----------------KQVTVLLGNL--SFPNGVALSEDGNYILLAETTSCRILRYWLKT 232 (359)
Q Consensus 191 -----------------~~~~~~~~~~--~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~ 232 (359)
-+...+.++. ....-++++-||. |++++..++.+.+||+..
T Consensus 249 ~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~Dgt-lLlSGd~dg~VcvWdi~S 308 (476)
T KOG0646|consen 249 LSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGT-LLLSGDEDGKVCVWDIYS 308 (476)
T ss_pred CCcccccccccccccccceeeeeccccCCcceeEEEEecCcc-EEEeeCCCCCEEEEecch
Confidence 1111111221 2345678888987 788888889999999754
No 191
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=96.95 E-value=0.21 Score=48.82 Aligned_cols=154 Identities=18% Similarity=0.151 Sum_probs=99.9
Q ss_pred CceEEEccCCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCc-ceEEEEecCCCeEEEE-
Q 018242 36 PESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGR-PLGLCFNKTNGDLYIA- 113 (359)
Q Consensus 36 p~~i~~~~~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-p~gi~~~~~~g~l~v~- 113 (359)
-.++++++|+.+++......-+..|...++++.. .+...... ...+++++ .+.+...
T Consensus 65 ita~~l~~d~~~L~~a~rs~llrv~~L~tgk~ir--------------------swKa~He~Pvi~ma~~~-~g~LlAtg 123 (775)
T KOG0319|consen 65 ITALALTPDEEVLVTASRSQLLRVWSLPTGKLIR--------------------SWKAIHEAPVITMAFDP-TGTLLATG 123 (775)
T ss_pred hheeeecCCccEEEEeeccceEEEEEcccchHhH--------------------hHhhccCCCeEEEEEcC-CCceEEec
Confidence 3478899999988888888888899988874321 22222223 46889999 5655443
Q ss_pred eCCCcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCCcE
Q 018242 114 DAYFGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQV 193 (359)
Q Consensus 114 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~ 193 (359)
...+.+..+|.+.+..++.....+ ..+..+.+.|+-+ .|+-- .+...+.|..||..++..
T Consensus 124 gaD~~v~VWdi~~~~~th~fkG~g----GvVssl~F~~~~~-~~lL~---------------sg~~D~~v~vwnl~~~~t 183 (775)
T KOG0319|consen 124 GADGRVKVWDIKNGYCTHSFKGHG----GVVSSLLFHPHWN-RWLLA---------------SGATDGTVRVWNLNDKRT 183 (775)
T ss_pred cccceEEEEEeeCCEEEEEecCCC----ceEEEEEeCCccc-hhhee---------------ecCCCceEEEEEcccCch
Confidence 333457788999887766433211 2456778888766 33331 124467788888875433
Q ss_pred --EEEeCCCCCCceEEEccCCCEEEEEecCCCEEEEEEcC
Q 018242 194 --TVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLK 231 (359)
Q Consensus 194 --~~~~~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~ 231 (359)
.....+.....++++.+|+.. .++...+.-+..||+.
T Consensus 184 cl~~~~~H~S~vtsL~~~~d~~~-~ls~~RDkvi~vwd~~ 222 (775)
T KOG0319|consen 184 CLHTMILHKSAVTSLAFSEDSLE-LLSVGRDKVIIVWDLV 222 (775)
T ss_pred HHHHHHhhhhheeeeeeccCCce-EEEeccCcEEEEeehh
Confidence 112344567789999999875 4444566788999974
No 192
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=96.94 E-value=0.25 Score=43.64 Aligned_cols=138 Identities=12% Similarity=0.037 Sum_probs=77.8
Q ss_pred CCeEEEEeC--CCcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEE
Q 018242 107 NGDLYIADA--YFGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLM 184 (359)
Q Consensus 107 ~g~l~v~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~ 184 (359)
++-.|+++. ...|+.++.++..+..+.. ....-+..+++|+|+++-++-. +..-.||
T Consensus 197 ~~~k~imsas~dt~i~lw~lkGq~L~~idt-----nq~~n~~aavSP~GRFia~~gF----------------TpDVkVw 255 (420)
T KOG2096|consen 197 GNAKYIMSASLDTKICLWDLKGQLLQSIDT-----NQSSNYDAAVSPDGRFIAVSGF----------------TPDVKVW 255 (420)
T ss_pred CCceEEEEecCCCcEEEEecCCceeeeecc-----ccccccceeeCCCCcEEEEecC----------------CCCceEE
Confidence 455555433 4469999999655554432 1224456799999994433311 1222344
Q ss_pred E--EeCCCCcEEEE------eCCCCCCceEEEccCCCEEEEEecCCCEEEEEEcCC-------CCCccee-Eeec-CCCC
Q 018242 185 K--YDPATKQVTVL------LGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKT-------SKAGTIE-IVAQ-LPGF 247 (359)
Q Consensus 185 ~--~d~~~~~~~~~------~~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~-------~~~~~~~-~~~~-~~~~ 247 (359)
. |.. .|+++.+ .++-......||+++.+ ..++-+.++.+..||.+- +++.+.. .... .++-
T Consensus 256 E~~f~k-dG~fqev~rvf~LkGH~saV~~~aFsn~S~-r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~ 333 (420)
T KOG2096|consen 256 EPIFTK-DGTFQEVKRVFSLKGHQSAVLAAAFSNSST-RAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSE 333 (420)
T ss_pred EEEecc-CcchhhhhhhheeccchhheeeeeeCCCcc-eeEEEecCCcEEEeeccceEecCCCchHhhcCCcchhhcCCC
Confidence 2 322 3444432 22334456788988876 466667778888887641 1111110 0111 2344
Q ss_pred CCceEECCCCCEEEEEecCC
Q 018242 248 PDNIKRSPRGGFWVGIHSRR 267 (359)
Q Consensus 248 p~~i~~d~~G~lwv~~~~~~ 267 (359)
|-.+...|+|.++..+.+..
T Consensus 334 p~RL~lsP~g~~lA~s~gs~ 353 (420)
T KOG2096|consen 334 PVRLELSPSGDSLAVSFGSD 353 (420)
T ss_pred ceEEEeCCCCcEEEeecCCc
Confidence 66789999999999888755
No 193
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=96.90 E-value=0.027 Score=49.52 Aligned_cols=150 Identities=13% Similarity=0.154 Sum_probs=83.6
Q ss_pred ceEEEccCCCeeEEecCCCEEEEEEcCCcc-eEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCC-CeEEEEe
Q 018242 37 ESLAFDALGEGPYTGVSDGRIIKWHQDQRR-WLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTN-GDLYIAD 114 (359)
Q Consensus 37 ~~i~~~~~G~~l~~~~~~~~i~~~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~-g~l~v~~ 114 (359)
....+.+||..+..+..+|.+..|+.++.+ ..+|...+.. . ....+.+-|++ ..+.|++
T Consensus 352 n~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d-----------------~--~vnsv~~~PKnpeh~iVCN 412 (508)
T KOG0275|consen 352 NEATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTD-----------------Y--PVNSVILLPKNPEHFIVCN 412 (508)
T ss_pred cceEEcCCCCeEEEecCCccEEEecCcchhhhhhccCCCCc-----------------c--cceeEEEcCCCCceEEEEc
Confidence 356688899988888999999999998764 3333211100 0 01122222222 2344445
Q ss_pred CCCcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCCcEE
Q 018242 115 AYFGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQVT 194 (359)
Q Consensus 115 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~ 194 (359)
..+.++.++..+..++.+.. .......++ ..+.+|.|.++|-. +..+.+|++...+|.++
T Consensus 413 rsntv~imn~qGQvVrsfsS-GkREgGdFi-~~~lSpkGewiYci------------------gED~vlYCF~~~sG~LE 472 (508)
T KOG0275|consen 413 RSNTVYIMNMQGQVVRSFSS-GKREGGDFI-NAILSPKGEWIYCI------------------GEDGVLYCFSVLSGKLE 472 (508)
T ss_pred CCCeEEEEeccceEEeeecc-CCccCCceE-EEEecCCCcEEEEE------------------ccCcEEEEEEeecCcee
Confidence 44555555555443333221 111112233 45788999967665 33567999998888877
Q ss_pred EEeC-CCCCCceEEEccCCCEEEEEecCCCEEE
Q 018242 195 VLLG-NLSFPNGVALSEDGNYILLAETTSCRIL 226 (359)
Q Consensus 195 ~~~~-~~~~p~gia~~~d~~~l~v~~~~~~~i~ 226 (359)
.... .-.-+-|++-.|..+ ++.+.+.++.+.
T Consensus 473 ~tl~VhEkdvIGl~HHPHqN-llAsYsEDgllK 504 (508)
T KOG0275|consen 473 RTLPVHEKDVIGLTHHPHQN-LLASYSEDGLLK 504 (508)
T ss_pred eeeecccccccccccCcccc-hhhhhcccchhh
Confidence 6532 223456777666554 566655554443
No 194
>KOG4328 consensus WD40 protein [Function unknown]
Probab=96.88 E-value=0.17 Score=46.76 Aligned_cols=155 Identities=13% Similarity=0.034 Sum_probs=88.5
Q ss_pred ceEEEccCC-CeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEEeC
Q 018242 37 ESLAFDALG-EGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIADA 115 (359)
Q Consensus 37 ~~i~~~~~G-~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~~~ 115 (359)
.+|.|.|.. ..+|.++++|.|..-|.+++.+..+. .......-..++.+..+++.+++++.
T Consensus 238 s~l~F~P~n~s~i~ssSyDGtiR~~D~~~~i~e~v~------------------s~~~d~~~fs~~d~~~e~~~vl~~~~ 299 (498)
T KOG4328|consen 238 SGLKFSPANTSQIYSSSYDGTIRLQDFEGNISEEVL------------------SLDTDNIWFSSLDFSAESRSVLFGDN 299 (498)
T ss_pred cceEecCCChhheeeeccCceeeeeeecchhhHHHh------------------hcCccceeeeeccccCCCccEEEeec
Confidence 377777753 23888889999998888876433221 11111111235556776788888876
Q ss_pred CCcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCC--CcE
Q 018242 116 YFGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPAT--KQV 193 (359)
Q Consensus 116 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~--~~~ 193 (359)
.+-...+|..++..+...-.... ..+..+++.|-..++.++ .+ ..+.+-.||... ++.
T Consensus 300 ~G~f~~iD~R~~~s~~~~~~lh~---kKI~sv~~NP~~p~~laT-~s----------------~D~T~kIWD~R~l~~K~ 359 (498)
T KOG4328|consen 300 VGNFNVIDLRTDGSEYENLRLHK---KKITSVALNPVCPWFLAT-AS----------------LDQTAKIWDLRQLRGKA 359 (498)
T ss_pred ccceEEEEeecCCccchhhhhhh---cccceeecCCCCchheee-cc----------------cCcceeeeehhhhcCCC
Confidence 65556667665443221111111 257788999887734444 22 223343445431 111
Q ss_pred EEEe---CCCCCCceEEEccCCCEEEEEecCCCEEEEEEc
Q 018242 194 TVLL---GNLSFPNGVALSEDGNYILLAETTSCRILRYWL 230 (359)
Q Consensus 194 ~~~~---~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~ 230 (359)
..+. .+-...+...|+|++.. +++...++.|.+||.
T Consensus 360 sp~lst~~HrrsV~sAyFSPs~gt-l~TT~~D~~IRv~ds 398 (498)
T KOG4328|consen 360 SPFLSTLPHRRSVNSAYFSPSGGT-LLTTCQDNEIRVFDS 398 (498)
T ss_pred CcceecccccceeeeeEEcCCCCc-eEeeccCCceEEeec
Confidence 1111 22344678899999886 566667789999986
No 195
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=96.87 E-value=0.18 Score=46.10 Aligned_cols=121 Identities=15% Similarity=0.116 Sum_probs=68.7
Q ss_pred CCceEEEccCCCeeEEecCC------CEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCC
Q 018242 35 GPESLAFDALGEGPYTGVSD------GRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNG 108 (359)
Q Consensus 35 ~p~~i~~~~~G~~l~~~~~~------~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g 108 (359)
.||+|++.++|.+||.+-.. ..|+++++++.-...+..+........... . .......-+|++++++.
T Consensus 86 D~Egi~~~~~g~~~is~E~~~~~~~~p~I~~~~~~G~~~~~~~vP~~~~~~~~~~~-----~-~~~N~G~E~la~~~dG~ 159 (326)
T PF13449_consen 86 DPEGIAVPPDGSFWISSEGGRTGGIPPRIRRFDLDGRVIRRFPVPAAFLPDANGTS-----G-RRNNRGFEGLAVSPDGR 159 (326)
T ss_pred ChhHeEEecCCCEEEEeCCccCCCCCCEEEEECCCCcccceEccccccccccCccc-----c-ccCCCCeEEEEECCCCC
Confidence 88999998889844444555 699999988543344433322211100000 0 01112345899999444
Q ss_pred eEEEEeCC----------------CcEEEEeCCC-Ce-EEEEeecCCC----ccccccceEEEeCCCCEEEEEeCC
Q 018242 109 DLYIADAY----------------FGLLKVGPEG-GL-ATAVATQSEG----IPFRFCNSLDIDQSTGIIYFTDSS 162 (359)
Q Consensus 109 ~l~v~~~~----------------~~i~~~~~~~-~~-~~~~~~~~~~----~~~~~~~~l~~d~~g~~l~v~d~~ 162 (359)
.||++... ..|+++++.+ ++ ...+.-.... .....+.+++..++++ ++|-+..
T Consensus 160 ~l~~~~E~~l~~d~~~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~-lLvLER~ 234 (326)
T PF13449_consen 160 TLFAAMESPLKQDGPRANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGR-LLVLERD 234 (326)
T ss_pred EEEEEECccccCCCcccccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCc-EEEEEcc
Confidence 48887421 1366778765 21 2222111111 1345778899999999 9998665
No 196
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=96.86 E-value=0.036 Score=50.07 Aligned_cols=157 Identities=13% Similarity=0.187 Sum_probs=95.7
Q ss_pred CCCceEEEccCCCeeEEecCCCEEEEEEcCCcc--eEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEE
Q 018242 34 IGPESLAFDALGEGPYTGVSDGRIIKWHQDQRR--WLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLY 111 (359)
Q Consensus 34 ~~p~~i~~~~~G~~l~~~~~~~~i~~~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~ 111 (359)
..+..++..++|+++++++...+.+.++...+. .+.. .......+|..+.+..++-...
T Consensus 63 ~a~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~-------------------~~~~v~~~~~ai~~~~~~~sv~ 123 (390)
T KOG3914|consen 63 LAPALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLL-------------------DVSCVPKRPTAISFIREDTSVL 123 (390)
T ss_pred ccccccccCCCceEEEEEeCCCceEEEEEecCCCcceee-------------------eEeecccCcceeeeeeccceEE
Confidence 356677777889988888888887666654431 1111 1122334577788887677788
Q ss_pred EEeCCCcEEEEeCCC---CeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEe-
Q 018242 112 IADAYFGLLKVGPEG---GLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYD- 187 (359)
Q Consensus 112 v~~~~~~i~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d- 187 (359)
+++..+..+.++.-. +..+.+.. ......++++++|+++|..+|. ..+|....
T Consensus 124 v~dkagD~~~~di~s~~~~~~~~~lG-----hvSml~dVavS~D~~~IitaDR------------------DEkIRvs~y 180 (390)
T KOG3914|consen 124 VADKAGDVYSFDILSADSGRCEPILG-----HVSMLLDVAVSPDDQFIITADR------------------DEKIRVSRY 180 (390)
T ss_pred EEeecCCceeeeeecccccCcchhhh-----hhhhhheeeecCCCCEEEEecC------------------CceEEEEec
Confidence 887766677666433 32222221 2346678999999995555542 33343322
Q ss_pred CCCCcEEEE-eCCCCCCceEEEccCCCEEEEEecCCCEEEEEEcCCCC
Q 018242 188 PATKQVTVL-LGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSK 234 (359)
Q Consensus 188 ~~~~~~~~~-~~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~ 234 (359)
|.+...+.+ .++-.+...+++.++ . ++++..++++|+.|++...+
T Consensus 181 pa~f~IesfclGH~eFVS~isl~~~-~-~LlS~sGD~tlr~Wd~~sgk 226 (390)
T KOG3914|consen 181 PATFVIESFCLGHKEFVSTISLTDN-Y-LLLSGSGDKTLRLWDITSGK 226 (390)
T ss_pred CcccchhhhccccHhheeeeeeccC-c-eeeecCCCCcEEEEecccCC
Confidence 122222222 234456788888754 3 68899999999999987553
No 197
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=96.85 E-value=0.4 Score=44.55 Aligned_cols=181 Identities=18% Similarity=0.215 Sum_probs=93.1
Q ss_pred CCc-eEEEccCCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEE
Q 018242 35 GPE-SLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIA 113 (359)
Q Consensus 35 ~p~-~i~~~~~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~ 113 (359)
+|- ++-+..+|+.+..+.-++.+..||..++++++- +... ..| ++.++-.+..-|++
T Consensus 277 gPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~--------------------f~~~-s~~-~lDVdW~~~~~F~t 334 (524)
T KOG0273|consen 277 GPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQ--------------------FEFH-SAP-ALDVDWQSNDEFAT 334 (524)
T ss_pred CceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEe--------------------eeec-cCC-ccceEEecCceEee
Confidence 443 777888999677778889999999987755431 1111 112 33334334444444
Q ss_pred -eCCCcEE--EEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCC-
Q 018242 114 -DAYFGLL--KVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPA- 189 (359)
Q Consensus 114 -~~~~~i~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~- 189 (359)
.....|. +++.+.-. ..+.. ....++.|.++|.|. |..+-+. ++.+-.|+..
T Consensus 335 s~td~~i~V~kv~~~~P~-~t~~G-----H~g~V~alk~n~tg~-LLaS~Sd-----------------D~TlkiWs~~~ 390 (524)
T KOG0273|consen 335 SSTDGCIHVCKVGEDRPV-KTFIG-----HHGEVNALKWNPTGS-LLASCSD-----------------DGTLKIWSMGQ 390 (524)
T ss_pred cCCCceEEEEEecCCCcc-eeeec-----ccCceEEEEECCCCc-eEEEecC-----------------CCeeEeeecCC
Confidence 3333344 44443222 22222 234678999999999 8777433 2333333321
Q ss_pred CCcEEEEeCCC-------CCCce-EEEccCCCEEEEEecCCCEEEEEEcCCCCCcceeEeecCCCCCCceEECCCCCEEE
Q 018242 190 TKQVTVLLGNL-------SFPNG-VALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGGFWV 261 (359)
Q Consensus 190 ~~~~~~~~~~~-------~~p~g-ia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lwv 261 (359)
.+.+..+...- ..|.| +.-.|..+..+.+...++.|..||+..+.. .-.|.....-...+++.++|++..
T Consensus 391 ~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~--i~~f~kH~~pVysvafS~~g~ylA 468 (524)
T KOG0273|consen 391 SNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVP--IHTLMKHQEPVYSVAFSPNGRYLA 468 (524)
T ss_pred CcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCce--eEeeccCCCceEEEEecCCCcEEE
Confidence 11111111111 12222 111232233455556778999999765421 111222122236789999997665
Q ss_pred EE
Q 018242 262 GI 263 (359)
Q Consensus 262 ~~ 263 (359)
..
T Consensus 469 sG 470 (524)
T KOG0273|consen 469 SG 470 (524)
T ss_pred ec
Confidence 33
No 198
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=96.84 E-value=0.057 Score=48.84 Aligned_cols=147 Identities=16% Similarity=0.159 Sum_probs=90.7
Q ss_pred eeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEEeCCC-cEEEEeCC
Q 018242 47 GPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIADAYF-GLLKVGPE 125 (359)
Q Consensus 47 ~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~~~~~-~i~~~~~~ 125 (359)
+|..+..+..|..||..+++... .+. .......+.|.. +|.+++++..+ .|..+|+.
T Consensus 146 VLlsag~Dn~v~iWnv~tgeali--------------------~l~-hpd~i~S~sfn~-dGs~l~TtckDKkvRv~dpr 203 (472)
T KOG0303|consen 146 VLLSAGSDNTVSIWNVGTGEALI--------------------TLD-HPDMVYSMSFNR-DGSLLCTTCKDKKVRVIDPR 203 (472)
T ss_pred hHhhccCCceEEEEeccCCceee--------------------ecC-CCCeEEEEEecc-CCceeeeecccceeEEEcCC
Confidence 35555567889999998874221 222 223345778888 88888876544 58899999
Q ss_pred CCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCCcEEEEeCCCCCCce
Q 018242 126 GGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQVTVLLGNLSFPNG 205 (359)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~p~g 205 (359)
++++..-. .......+....+-.+|. ++.+-.+.+- .-.+..+|++.-+.-.....+...+|
T Consensus 204 ~~~~v~e~---~~heG~k~~Raifl~~g~-i~tTGfsr~s--------------eRq~aLwdp~nl~eP~~~~elDtSnG 265 (472)
T KOG0303|consen 204 RGTVVSEG---VAHEGAKPARAIFLASGK-IFTTGFSRMS--------------ERQIALWDPNNLEEPIALQELDTSNG 265 (472)
T ss_pred CCcEeeec---ccccCCCcceeEEeccCc-eeeecccccc--------------ccceeccCcccccCcceeEEeccCCc
Confidence 88764322 112233556677778888 6666333211 11355666653222222233344566
Q ss_pred EE---EccCCCEEEEEecCCCEEEEEEcCCC
Q 018242 206 VA---LSEDGNYILLAETTSCRILRYWLKTS 233 (359)
Q Consensus 206 ia---~~~d~~~l~v~~~~~~~i~~~~~~~~ 233 (359)
+. +++|.+.+|+.+-.++.|.-|.+..+
T Consensus 266 vl~PFyD~dt~ivYl~GKGD~~IRYyEit~d 296 (472)
T KOG0303|consen 266 VLLPFYDPDTSIVYLCGKGDSSIRYFEITNE 296 (472)
T ss_pred eEEeeecCCCCEEEEEecCCcceEEEEecCC
Confidence 54 47899999999999999988887654
No 199
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=96.83 E-value=0.12 Score=45.33 Aligned_cols=109 Identities=11% Similarity=-0.007 Sum_probs=76.5
Q ss_pred ceEEEEecCCCeEEEEeCCCcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeec
Q 018242 98 PLGLCFNKTNGDLYIADAYFGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSG 177 (359)
Q Consensus 98 p~gi~~~~~~g~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~ 177 (359)
...+.|++..+.|.++.+.+.+..|+........... .+ ..+-+.++.++-. +|++
T Consensus 16 IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~--~~---~plL~c~F~d~~~-~~~G------------------ 71 (323)
T KOG1036|consen 16 ISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKFK--HG---APLLDCAFADEST-IVTG------------------ 71 (323)
T ss_pred eeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhhee--cC---CceeeeeccCCce-EEEe------------------
Confidence 3467788878999999877778888877654332211 11 1223556666666 8887
Q ss_pred CCCceEEEEeCCCCcEEEEeCCCCCCceEEEccCCCEEEEEecCCCEEEEEEcC
Q 018242 178 DKTGRLMKYDPATKQVTVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLK 231 (359)
Q Consensus 178 ~~~g~v~~~d~~~~~~~~~~~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~ 231 (359)
+..|.|.++|.+++....+..+......|...+... .+++.+.+++|..||..
T Consensus 72 ~~dg~vr~~Dln~~~~~~igth~~~i~ci~~~~~~~-~vIsgsWD~~ik~wD~R 124 (323)
T KOG1036|consen 72 GLDGQVRRYDLNTGNEDQIGTHDEGIRCIEYSYEVG-CVISGSWDKTIKFWDPR 124 (323)
T ss_pred ccCceEEEEEecCCcceeeccCCCceEEEEeeccCC-eEEEcccCccEEEEecc
Confidence 346789999999887777666666667777775433 78899999999999964
No 200
>PHA02713 hypothetical protein; Provisional
Probab=96.82 E-value=0.5 Score=46.59 Aligned_cols=124 Identities=12% Similarity=0.151 Sum_probs=65.5
Q ss_pred EEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEEeCC-------CcEEEEeCCCCe
Q 018242 56 RIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIADAY-------FGLLKVGPEGGL 128 (359)
Q Consensus 56 ~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~~~~-------~~i~~~~~~~~~ 128 (359)
.+.+||+.+++|..++..+ ......+++.. ++.||+.... +.+.+||+.++.
T Consensus 273 ~v~~yd~~~~~W~~l~~mp-------------------~~r~~~~~a~l--~~~IYviGG~~~~~~~~~~v~~Yd~~~n~ 331 (557)
T PHA02713 273 CILVYNINTMEYSVISTIP-------------------NHIINYASAIV--DNEIIIAGGYNFNNPSLNKVYKINIENKI 331 (557)
T ss_pred CEEEEeCCCCeEEECCCCC-------------------ccccceEEEEE--CCEEEEEcCCCCCCCccceEEEEECCCCe
Confidence 4788999998887654211 00112344443 7788886431 237899999888
Q ss_pred EEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCCcEEEEeCCCCCCc---e
Q 018242 129 ATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQVTVLLGNLSFPN---G 205 (359)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~p~---g 205 (359)
+..+..- +......-+..-+|+ ||+.-... .......+.+|||.+++...+. .+..+. +
T Consensus 332 W~~~~~m----~~~R~~~~~~~~~g~-IYviGG~~------------~~~~~~sve~Ydp~~~~W~~~~-~mp~~r~~~~ 393 (557)
T PHA02713 332 HVELPPM----IKNRCRFSLAVIDDT-IYAIGGQN------------GTNVERTIECYTMGDDKWKMLP-DMPIALSSYG 393 (557)
T ss_pred EeeCCCC----cchhhceeEEEECCE-EEEECCcC------------CCCCCceEEEEECCCCeEEECC-CCCccccccc
Confidence 7654321 111111223334667 99872110 0011235899999987765543 222221 2
Q ss_pred EEEccCCCEEEEEec
Q 018242 206 VALSEDGNYILLAET 220 (359)
Q Consensus 206 ia~~~d~~~l~v~~~ 220 (359)
.+. -++ .+|+.+-
T Consensus 394 ~~~-~~g-~IYviGG 406 (557)
T PHA02713 394 MCV-LDQ-YIYIIGG 406 (557)
T ss_pred EEE-ECC-EEEEEeC
Confidence 222 244 4788754
No 201
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=96.79 E-value=0.081 Score=53.55 Aligned_cols=104 Identities=10% Similarity=0.042 Sum_probs=64.8
Q ss_pred CCceEEEccCCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEEe
Q 018242 35 GPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIAD 114 (359)
Q Consensus 35 ~p~~i~~~~~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~~ 114 (359)
.-.++.++|++.++.....++.|..||..+- .... .+.....-+.|+.+|| -|+.+.+.
T Consensus 131 DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF--~~~~------------------vl~~H~s~VKGvs~DP-~Gky~ASq 189 (942)
T KOG0973|consen 131 DVLDVNWSPDDSLLVSVSLDNSVIIWNAKTF--ELLK------------------VLRGHQSLVKGVSWDP-IGKYFASQ 189 (942)
T ss_pred ccceeccCCCccEEEEecccceEEEEccccc--eeee------------------eeecccccccceEECC-ccCeeeee
Confidence 3347889999997777778899999998764 2221 3334445578999999 77777765
Q ss_pred CCCc-EEEEeCCC-CeEEEEeecCCC-ccccccceEEEeCCCCEEEEE
Q 018242 115 AYFG-LLKVGPEG-GLATAVATQSEG-IPFRFCNSLDIDQSTGIIYFT 159 (359)
Q Consensus 115 ~~~~-i~~~~~~~-~~~~~~~~~~~~-~~~~~~~~l~~d~~g~~l~v~ 159 (359)
..++ |..++... +-.+.+..++.. ........+.++|||.+|-..
T Consensus 190 sdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~ 237 (942)
T KOG0973|consen 190 SDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASP 237 (942)
T ss_pred cCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecch
Confidence 5554 55555333 222223222221 122356778999999944333
No 202
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=96.78 E-value=0.38 Score=43.30 Aligned_cols=211 Identities=15% Similarity=0.073 Sum_probs=103.3
Q ss_pred CCCCCCceEEEccCCCeeEEec-CCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCe
Q 018242 31 EGAIGPESLAFDALGEGPYTGV-SDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGD 109 (359)
Q Consensus 31 ~~~~~p~~i~~~~~G~~l~~~~-~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~ 109 (359)
++-.--.+|.+.+||..|..+. .+..|+.||++++.-..+ .....+...-+.++|++..
T Consensus 193 pgh~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL--------------------~~~glgg~slLkwSPdgd~ 252 (445)
T KOG2139|consen 193 PGHNPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPL--------------------IPKGLGGFSLLKWSPDGDV 252 (445)
T ss_pred CCCceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccc--------------------cccCCCceeeEEEcCCCCE
Confidence 3333345899999999666544 446899999998732211 1112223334678994444
Q ss_pred EEEEeCCCcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccc-cccceeeeeecCCCce----EE
Q 018242 110 LYIADAYFGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQ-RRNHISVILSGDKTGR----LM 184 (359)
Q Consensus 110 l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~-~~~~~~~~~~~~~~g~----v~ 184 (359)
+|.+ .-+++.++=-++...+...-.. ....+..-+++|+|++|.++.++..-- +-....+-......+. +.
T Consensus 253 lfaA-t~davfrlw~e~q~wt~erw~l---gsgrvqtacWspcGsfLLf~~sgsp~lysl~f~~~~~~~~~~~~~k~~ll 328 (445)
T KOG2139|consen 253 LFAA-TCDAVFRLWQENQSWTKERWIL---GSGRVQTACWSPCGSFLLFACSGSPRLYSLTFDGEDSVFLRPQSIKRVLL 328 (445)
T ss_pred EEEe-cccceeeeehhcccceecceec---cCCceeeeeecCCCCEEEEEEcCCceEEEEeecCCCccccCcccceeeee
Confidence 5554 4455565532233322111111 112566789999999888886543200 0000000000000000 11
Q ss_pred EEeCCCCcEEEEeCC----CCCCceEEEccCCCEEEEEecCCCEEEEEEcC-----CCCCcceeEe-ec--CCCCCCceE
Q 018242 185 KYDPATKQVTVLLGN----LSFPNGVALSEDGNYILLAETTSCRILRYWLK-----TSKAGTIEIV-AQ--LPGFPDNIK 252 (359)
Q Consensus 185 ~~d~~~~~~~~~~~~----~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~-----~~~~~~~~~~-~~--~~~~p~~i~ 252 (359)
..|.. ++. +..+ ...+.-+|+||.|.+|.+.-.....|..+..- ..+...++.. .. -...|.-|.
T Consensus 329 iaDL~--e~t-i~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~sp~vels~cg~i~ge~P~~Is 405 (445)
T KOG2139|consen 329 IADLQ--EVT-ICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKSPPVELSYCGMIGGEYPAYIS 405 (445)
T ss_pred eccch--hhh-hhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccccCceEEEecccccCCCCceEE
Confidence 11111 100 0111 23467899999999888887776644333211 1111112211 11 112355566
Q ss_pred E---CCCCCEEEEEecCCC
Q 018242 253 R---SPRGGFWVGIHSRRK 268 (359)
Q Consensus 253 ~---d~~G~lwv~~~~~~~ 268 (359)
+ +.+|.+..-.+..+.
T Consensus 406 F~pl~n~g~lLsiaWsTGr 424 (445)
T KOG2139|consen 406 FGPLKNEGRLLSIAWSTGR 424 (445)
T ss_pred eeecccCCcEEEEEeccCc
Confidence 6 467888887776554
No 203
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=96.78 E-value=0.045 Score=48.94 Aligned_cols=187 Identities=15% Similarity=0.187 Sum_probs=103.0
Q ss_pred CCceEEEccCC-CeeEEecCCCEEEEEEcCCcc-eEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEE
Q 018242 35 GPESLAFDALG-EGPYTGVSDGRIIKWHQDQRR-WLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYI 112 (359)
Q Consensus 35 ~p~~i~~~~~G-~~l~~~~~~~~i~~~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v 112 (359)
+-.+++-+|.. ..++.+..+|.|..||..+.. ... +....+-..||+++. ...+.+
T Consensus 68 GV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~---------------------f~AH~G~V~Gi~v~~-~~~~tv 125 (433)
T KOG0268|consen 68 GVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRT---------------------FKAHEGLVRGICVTQ-TSFFTV 125 (433)
T ss_pred ccchhhcCcchhhhhhccccCceEEEEehhhhhhhhe---------------------eecccCceeeEEecc-cceEEe
Confidence 44566666654 347788899999999997742 222 223334468999997 566666
Q ss_pred EeCCCcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCCc
Q 018242 113 ADAYFGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQ 192 (359)
Q Consensus 113 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~ 192 (359)
++ ...|-.+..++.....+... ....+|.-...++ ++.+. ...|-.||..-..
T Consensus 126 gd-DKtvK~wk~~~~p~~tilg~------s~~~gIdh~~~~~-~FaTc-------------------Ge~i~IWD~~R~~ 178 (433)
T KOG0268|consen 126 GD-DKTVKQWKIDGPPLHTILGK------SVYLGIDHHRKNS-VFATC-------------------GEQIDIWDEQRDN 178 (433)
T ss_pred cC-CcceeeeeccCCcceeeecc------ccccccccccccc-ccccc-------------------CceeeecccccCC
Confidence 65 33455555444322222210 1222333333444 44441 1135555553211
Q ss_pred -EEEEeCCCCCCceEEEccCCCEEEEEecCCCEEEEEEcCCCCCcceeEeecCCCCCCceEECCCCCEEEEEecCCCccc
Q 018242 193 -VTVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGGFWVGIHSRRKGIS 271 (359)
Q Consensus 193 -~~~~~~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lwv~~~~~~~~~~ 271 (359)
+..+.-+......+.+.|-...++.+...+..|..||+......+ ++. +...++.|++.|++..+++.....+
T Consensus 179 Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~-KVi--~~mRTN~IswnPeafnF~~a~ED~n--- 252 (433)
T KOG0268|consen 179 PVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLK-KVI--LTMRTNTICWNPEAFNFVAANEDHN--- 252 (433)
T ss_pred ccceeecCCCceeEEecCCCcchheeeeccCCceEEEecccCCccc-eee--eeccccceecCccccceeecccccc---
Confidence 111222222234566777655567777677899999986542211 111 2335788999998888887777665
Q ss_pred cccccCC
Q 018242 272 KLVLSFP 278 (359)
Q Consensus 272 ~~~~~~~ 278 (359)
++.|+
T Consensus 253 --lY~~D 257 (433)
T KOG0268|consen 253 --LYTYD 257 (433)
T ss_pred --ceehh
Confidence 55555
No 204
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=96.77 E-value=0.08 Score=48.14 Aligned_cols=136 Identities=12% Similarity=0.068 Sum_probs=85.9
Q ss_pred CCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEEeCCCcEEEEeC
Q 018242 45 GEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIADAYFGLLKVGP 124 (359)
Q Consensus 45 G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~~~~~~i~~~~~ 124 (359)
+.....+..++.|..||..+..... . .+..+....+.++.++..+..+...+.+-.+|.
T Consensus 312 ~~~~~SgH~DkkvRfwD~Rs~~~~~--------------------s-v~~gg~vtSl~ls~~g~~lLsssRDdtl~viDl 370 (459)
T KOG0288|consen 312 ISDVISGHFDKKVRFWDIRSADKTR--------------------S-VPLGGRVTSLDLSMDGLELLSSSRDDTLKVIDL 370 (459)
T ss_pred ceeeeecccccceEEEeccCCceee--------------------E-eecCcceeeEeeccCCeEEeeecCCCceeeeec
Confidence 3335667788899999976542211 1 233345667777775566776665666888888
Q ss_pred CCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCCcEEEEeCCC---C
Q 018242 125 EGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQVTVLLGNL---S 201 (359)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~---~ 201 (359)
.+..+.+...-..-......+.++++|++. |++ .++-.|.|+.|+..+++++...... +
T Consensus 371 Rt~eI~~~~sA~g~k~asDwtrvvfSpd~~--Yva----------------AGS~dgsv~iW~v~tgKlE~~l~~s~s~~ 432 (459)
T KOG0288|consen 371 RTKEIRQTFSAEGFKCASDWTRVVFSPDGS--YVA----------------AGSADGSVYIWSVFTGKLEKVLSLSTSNA 432 (459)
T ss_pred ccccEEEEeeccccccccccceeEECCCCc--eee----------------eccCCCcEEEEEccCceEEEEeccCCCCc
Confidence 877765543211111122456789999998 555 1345678999999999888764332 2
Q ss_pred CCceEEEccCCCEEEEEe
Q 018242 202 FPNGVALSEDGNYILLAE 219 (359)
Q Consensus 202 ~p~gia~~~d~~~l~v~~ 219 (359)
....+++++.|..|.-++
T Consensus 433 aI~s~~W~~sG~~Llsad 450 (459)
T KOG0288|consen 433 AITSLSWNPSGSGLLSAD 450 (459)
T ss_pred ceEEEEEcCCCchhhccc
Confidence 345678888887655554
No 205
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.77 E-value=0.077 Score=48.22 Aligned_cols=184 Identities=17% Similarity=0.203 Sum_probs=101.4
Q ss_pred ceEEEccCCCeeEEecCCCEEEEEE-cCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEEeC
Q 018242 37 ESLAFDALGEGPYTGVSDGRIIKWH-QDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIADA 115 (359)
Q Consensus 37 ~~i~~~~~G~~l~~~~~~~~i~~~d-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~~~ 115 (359)
..+++..+|..+-++..+|.+..|+ |.-.... .......+...|.|++ |+++.++..
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l---------------------~e~~~~~eV~DL~FS~-dgk~lasig 205 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTIL---------------------EEIAHHAEVKDLDFSP-DGKFLASIG 205 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhh---------------------hhHhhcCccccceeCC-CCcEEEEec
Confidence 6889999988788888889999999 6543111 1222334566788999 888777765
Q ss_pred CCcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCC--CEEEEEeCCCccccccceeeeeecCCCceEEEEeCCC--C
Q 018242 116 YFGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQST--GIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPAT--K 191 (359)
Q Consensus 116 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g--~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~--~ 191 (359)
......++..++.. +....+.........+.+..++ ..++++.... +.+.|..++... +
T Consensus 206 ~d~~~VW~~~~g~~--~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~---------------~~~~v~~~~~~~w~~ 268 (398)
T KOG0771|consen 206 ADSARVWSVNTGAA--LARKTPFSKDEMFSSCRFSVDNAQETLRLAASQF---------------PGGGVRLCDISLWSG 268 (398)
T ss_pred CCceEEEEeccCch--hhhcCCcccchhhhhceecccCCCceEEEEEecC---------------CCCceeEEEeeeecc
Confidence 55667778777732 2221111111122233333333 3377775431 223333332211 1
Q ss_pred ----cEEEEeCCCCCCceEEEccCCCEEEEEecCCCEEEEEEcCCCCCcceeEeec-CCCCCCceEECCCCCEEEE
Q 018242 192 ----QVTVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQ-LPGFPDNIKRSPRGGFWVG 262 (359)
Q Consensus 192 ----~~~~~~~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~p~~i~~d~~G~lwv~ 262 (359)
..+...........++.+.||+.+-+ .+.++.|..|+...-+ ....+.+ ..+...++.+.|+-+.-..
T Consensus 269 ~~~l~~~~~~~~~~siSsl~VS~dGkf~Al-GT~dGsVai~~~~~lq--~~~~vk~aH~~~VT~ltF~Pdsr~~~s 341 (398)
T KOG0771|consen 269 SNFLRLRKKIKRFKSISSLAVSDDGKFLAL-GTMDGSVAIYDAKSLQ--RLQYVKEAHLGFVTGLTFSPDSRYLAS 341 (398)
T ss_pred ccccchhhhhhccCcceeEEEcCCCcEEEE-eccCCcEEEEEeceee--eeEeehhhheeeeeeEEEcCCcCcccc
Confidence 11122223445678899999985444 5567889988854321 1111222 2234567788776654443
No 206
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=96.73 E-value=0.42 Score=43.20 Aligned_cols=249 Identities=14% Similarity=0.134 Sum_probs=119.6
Q ss_pred EEEccCCCeeEEec-C---------CCEEEEEEcCCcceEEEe-ecCCCCCCCCCCcccccccccccCCcceEEEEecCC
Q 018242 39 LAFDALGEGPYTGV-S---------DGRIIKWHQDQRRWLHFA-RTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTN 107 (359)
Q Consensus 39 i~~~~~G~~l~~~~-~---------~~~i~~~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~ 107 (359)
+.++|||+.+|+.. . ..-|..||..+-+.+..- .|+++|.. ....+.-+.++.++
T Consensus 41 ~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~--------------~~~~~~~~~ls~dg 106 (342)
T PF06433_consen 41 VALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQ--------------VVPYKNMFALSADG 106 (342)
T ss_dssp EEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B----------------BS--GGGEEE-TTS
T ss_pred eeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchhe--------------ecccccceEEccCC
Confidence 77899999888653 1 146778999886544322 22111110 11234456788878
Q ss_pred CeEEEEeCC--CcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEE-
Q 018242 108 GDLYIADAY--FGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLM- 184 (359)
Q Consensus 108 g~l~v~~~~--~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~- 184 (359)
..+||.+.. ..|-.+|...+++....+ .+ .+..+.-..+.++.-++ ..|.+.
T Consensus 107 k~~~V~N~TPa~SVtVVDl~~~kvv~ei~-~P-----GC~~iyP~~~~~F~~lC-------------------~DGsl~~ 161 (342)
T PF06433_consen 107 KFLYVQNFTPATSVTVVDLAAKKVVGEID-TP-----GCWLIYPSGNRGFSMLC-------------------GDGSLLT 161 (342)
T ss_dssp SEEEEEEESSSEEEEEEETTTTEEEEEEE-GT-----SEEEEEEEETTEEEEEE-------------------TTSCEEE
T ss_pred cEEEEEccCCCCeEEEEECCCCceeeeec-CC-----CEEEEEecCCCceEEEe-------------------cCCceEE
Confidence 889998654 369999999888743222 11 22222222222212222 122333
Q ss_pred -EEeCCCCcEEEEeCCC----CCC--ceEEEccCCCEEEEEecCCCEEEEEEcCCCCCcceeEeecC-------CCCCCc
Q 018242 185 -KYDPATKQVTVLLGNL----SFP--NGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQL-------PGFPDN 250 (359)
Q Consensus 185 -~~d~~~~~~~~~~~~~----~~p--~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~-------~~~p~~ 250 (359)
.+|.+ |+........ ..| +.-++..++.++|+. +.++.|+..++.+........+.-. .-.|.|
T Consensus 162 v~Ld~~-Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~-Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG 239 (342)
T PF06433_consen 162 VTLDAD-GKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFV-SYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGG 239 (342)
T ss_dssp EEETST-SSEEEEEEEESSTTTS-B-S--EEETTTTEEEEE-BTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-S
T ss_pred EEECCC-CCEeEeeccccCCCCcccccccceECCCCeEEEE-ecCCEEEEEeccCCcccccCcccccCccccccCcCCcc
Confidence 23333 2322211111 111 222344455556664 5778999999876643322222211 113444
Q ss_pred ---eEECC-CCCEEEEEecC----CCccccccccCC-ccceeeecCCccceeeeeecccccCcceEEEEECCCCCEEEEE
Q 018242 251 ---IKRSP-RGGFWVGIHSR----RKGISKLVLSFP-WIGNVLIKLPIDIVKIHSSLVKLSGNGGMAMRISEQGNVLEIL 321 (359)
Q Consensus 251 ---i~~d~-~G~lwv~~~~~----~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 321 (359)
+++.+ .|+||+....+ ++.-..-++.++ .+++.+.++++..+ +.++.+.-+.. ..++..+.....+..|
T Consensus 240 ~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~~~-~~Si~Vsqd~~-P~L~~~~~~~~~l~v~ 317 (342)
T PF06433_consen 240 WQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLEHP-IDSIAVSQDDK-PLLYALSAGDGTLDVY 317 (342)
T ss_dssp SS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEEEE-ESEEEEESSSS--EEEEEETTTTEEEEE
T ss_pred eeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCCCc-cceEEEccCCC-cEEEEEcCCCCeEEEE
Confidence 67765 67899866532 222223345544 46777777776422 22333333333 4555555555555555
Q ss_pred EccCCceee
Q 018242 322 EEIGRKMWR 330 (359)
Q Consensus 322 ~~~~g~~~~ 330 (359)
....|+...
T Consensus 318 D~~tGk~~~ 326 (342)
T PF06433_consen 318 DAATGKLVR 326 (342)
T ss_dssp ETTT--EEE
T ss_pred eCcCCcEEe
Confidence 544554433
No 207
>smart00135 LY Low-density lipoprotein-receptor YWTD domain. Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.
Probab=96.70 E-value=0.0096 Score=36.07 Aligned_cols=36 Identities=19% Similarity=0.094 Sum_probs=31.6
Q ss_pred CCCCCCceEEEccCCCEEEEEecCCCEEEEEEcCCC
Q 018242 198 GNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTS 233 (359)
Q Consensus 198 ~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~ 233 (359)
.....|+++++++.++.+||++...+.|.+.++++.
T Consensus 6 ~~~~~~~~la~d~~~~~lYw~D~~~~~I~~~~~~g~ 41 (43)
T smart00135 6 EGLGHPNGLAVDWIEGRLYWTDWGLDVIEVANLDGT 41 (43)
T ss_pred CCCCCcCEEEEeecCCEEEEEeCCCCEEEEEeCCCC
Confidence 456779999999999999999999999999988653
No 208
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=96.68 E-value=0.018 Score=51.11 Aligned_cols=179 Identities=13% Similarity=0.128 Sum_probs=97.7
Q ss_pred EccCCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEEeCCCcEE
Q 018242 41 FDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIADAYFGLL 120 (359)
Q Consensus 41 ~~~~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~~~~~~i~ 120 (359)
.+-+.+++..++.+..|..||-++++-.. ...+...+..++.|. +|.+..+.....+.
T Consensus 243 Lqyd~rviisGSSDsTvrvWDv~tge~l~--------------------tlihHceaVLhlrf~--ng~mvtcSkDrsia 300 (499)
T KOG0281|consen 243 LQYDERVIVSGSSDSTVRVWDVNTGEPLN--------------------TLIHHCEAVLHLRFS--NGYMVTCSKDRSIA 300 (499)
T ss_pred eeccceEEEecCCCceEEEEeccCCchhh--------------------HHhhhcceeEEEEEe--CCEEEEecCCceeE
Confidence 33344556667777777777777662110 223344556778886 56665555445577
Q ss_pred EEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCCcEEEEeCCC
Q 018242 121 KVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQVTVLLGNL 200 (359)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~ 200 (359)
.+|+....-..+.....+ ....+|-+. -+.+ +.|+-++ .-.|-.++.++.++.....+
T Consensus 301 VWdm~sps~it~rrVLvG-HrAaVNvVd--fd~k-yIVsASg-----------------DRTikvW~~st~efvRtl~g- 358 (499)
T KOG0281|consen 301 VWDMASPTDITLRRVLVG-HRAAVNVVD--FDDK-YIVSASG-----------------DRTIKVWSTSTCEFVRTLNG- 358 (499)
T ss_pred EEeccCchHHHHHHHHhh-hhhheeeec--cccc-eEEEecC-----------------CceEEEEeccceeeehhhhc-
Confidence 777654321111000111 011333333 4445 4555333 23577788877776654332
Q ss_pred CCCceEEEccCCCEEEEEecCCCEEEEEEcCCCCCcceeEeecCCCCCCceEECCCCCEEEEEecCC
Q 018242 201 SFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGGFWVGIHSRR 267 (359)
Q Consensus 201 ~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lwv~~~~~~ 267 (359)
.-.|||.-.-...+.|+++.+++|..|++..+.. .+.+.....+...+.+|. -+|.-+..++.
T Consensus 359 -HkRGIAClQYr~rlvVSGSSDntIRlwdi~~G~c--LRvLeGHEeLvRciRFd~-krIVSGaYDGk 421 (499)
T KOG0281|consen 359 -HKRGIACLQYRDRLVVSGSSDNTIRLWDIECGAC--LRVLEGHEELVRCIRFDN-KRIVSGAYDGK 421 (499)
T ss_pred -ccccceehhccCeEEEecCCCceEEEEeccccHH--HHHHhchHHhhhheeecC-ceeeeccccce
Confidence 3478887655556999999999999999865422 111111223455677764 34655666554
No 209
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=96.67 E-value=0.34 Score=43.60 Aligned_cols=142 Identities=12% Similarity=0.133 Sum_probs=78.5
Q ss_pred CCeEEEEeCCCcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEE
Q 018242 107 NGDLYIADAYFGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKY 186 (359)
Q Consensus 107 ~g~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~ 186 (359)
+++|.|+-.. .|+.+|.++=+.-+-....+..+ ....++..+.++. |++-.+ ....|.|+.|
T Consensus 97 r~RLvV~Lee-~IyIydI~~MklLhTI~t~~~n~-~gl~AlS~n~~n~--ylAyp~--------------s~t~GdV~l~ 158 (391)
T KOG2110|consen 97 RKRLVVCLEE-SIYIYDIKDMKLLHTIETTPPNP-KGLCALSPNNANC--YLAYPG--------------STTSGDVVLF 158 (391)
T ss_pred cceEEEEEcc-cEEEEecccceeehhhhccCCCc-cceEeeccCCCCc--eEEecC--------------CCCCceEEEE
Confidence 5677777533 49999987644322112111111 1223344444444 666221 1235789999
Q ss_pred eCCCCcEE-EEeCCCCCCceEEEccCCCEEEEEecCCCEEEEEEcCCCCCcceeEeec--CCCCCCceEECCCCCEEEEE
Q 018242 187 DPATKQVT-VLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQ--LPGFPDNIKRSPRGGFWVGI 263 (359)
Q Consensus 187 d~~~~~~~-~~~~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~--~~~~p~~i~~d~~G~lwv~~ 263 (359)
|..+-+.. .+..+-.....++|+++|. ++.+.++.++|.|.-.-++.. ....|.. .+.....+++++++.+..++
T Consensus 159 d~~nl~~v~~I~aH~~~lAalafs~~G~-llATASeKGTVIRVf~v~~G~-kl~eFRRG~~~~~IySL~Fs~ds~~L~~s 236 (391)
T KOG2110|consen 159 DTINLQPVNTINAHKGPLAALAFSPDGT-LLATASEKGTVIRVFSVPEGQ-KLYEFRRGTYPVSIYSLSFSPDSQFLAAS 236 (391)
T ss_pred EcccceeeeEEEecCCceeEEEECCCCC-EEEEeccCceEEEEEEcCCcc-EeeeeeCCceeeEEEEEEECCCCCeEEEe
Confidence 98753322 2333334457899999997 788888888887754322211 1112211 12224458999999877777
Q ss_pred ecCCC
Q 018242 264 HSRRK 268 (359)
Q Consensus 264 ~~~~~ 268 (359)
.....
T Consensus 237 S~TeT 241 (391)
T KOG2110|consen 237 SNTET 241 (391)
T ss_pred cCCCe
Confidence 66554
No 210
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.65 E-value=0.62 Score=46.86 Aligned_cols=157 Identities=8% Similarity=0.097 Sum_probs=99.9
Q ss_pred CCCCCceEEEccCCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEE
Q 018242 32 GAIGPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLY 111 (359)
Q Consensus 32 ~~~~p~~i~~~~~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~ 111 (359)
+-.+.-+++|.|.--.+.++...|.|..||-.-+... -.+....+..+|++|.+ .+-+|
T Consensus 8 kSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli--------------------~rFdeHdGpVRgv~FH~-~qplF 66 (1202)
T KOG0292|consen 8 KSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLI--------------------DRFDEHDGPVRGVDFHP-TQPLF 66 (1202)
T ss_pred ccccccceecCCCCCEEEEeecCceeeeehhhhhhHH--------------------hhhhccCCccceeeecC-CCCeE
Confidence 3346679999998774556778899999998654211 13444556678999999 99999
Q ss_pred EEeCCC-cEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCC
Q 018242 112 IADAYF-GLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPAT 190 (359)
Q Consensus 112 v~~~~~-~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~ 190 (359)
|+...+ .|-+++.++++... .... ....+..+.++++- -||-..+ .+.+|..|+=.+
T Consensus 67 VSGGDDykIkVWnYk~rrclf--tL~G--HlDYVRt~~FHhey--PWIlSAS----------------DDQTIrIWNwqs 124 (1202)
T KOG0292|consen 67 VSGGDDYKIKVWNYKTRRCLF--TLLG--HLDYVRTVFFHHEY--PWILSAS----------------DDQTIRIWNWQS 124 (1202)
T ss_pred EecCCccEEEEEecccceehh--hhcc--ccceeEEeeccCCC--ceEEEcc----------------CCCeEEEEeccC
Confidence 985433 36677777665421 1111 12355566676654 5776332 344666677666
Q ss_pred CcEEEEeCC-CCCCceEEEccCCCEEEEEecCCCEEEEEEcCC
Q 018242 191 KQVTVLLGN-LSFPNGVALSEDGNYILLAETTSCRILRYWLKT 232 (359)
Q Consensus 191 ~~~~~~~~~-~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~ 232 (359)
++...+..+ ....--..|.|... ++|+.+-+.+|.+||+.+
T Consensus 125 r~~iavltGHnHYVMcAqFhptED-lIVSaSLDQTVRVWDisG 166 (1202)
T KOG0292|consen 125 RKCIAVLTGHNHYVMCAQFHPTED-LIVSASLDQTVRVWDISG 166 (1202)
T ss_pred CceEEEEecCceEEEeeccCCccc-eEEEecccceEEEEeecc
Confidence 666544432 22222334556443 899999999999999864
No 211
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=96.64 E-value=0.18 Score=44.45 Aligned_cols=189 Identities=14% Similarity=0.077 Sum_probs=98.3
Q ss_pred eEEEEecCCCe-EEEEeCCCcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeec
Q 018242 99 LGLCFNKTNGD-LYIADAYFGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSG 177 (359)
Q Consensus 99 ~gi~~~~~~g~-l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~ 177 (359)
..+.|++ .|. |.++-..+.++.||..|.....+.. ....-+..++++++|+ ..++.+
T Consensus 27 ~~~~Fs~-~G~~lAvGc~nG~vvI~D~~T~~iar~ls----aH~~pi~sl~WS~dgr-~LltsS---------------- 84 (405)
T KOG1273|consen 27 ECCQFSR-WGDYLAVGCANGRVVIYDFDTFRIARMLS----AHVRPITSLCWSRDGR-KLLTSS---------------- 84 (405)
T ss_pred ceEEecc-CcceeeeeccCCcEEEEEccccchhhhhh----ccccceeEEEecCCCC-Eeeeec----------------
Confidence 4566887 555 4455555668899988765432211 1123456899999999 666632
Q ss_pred CCCceEEEEeCCCCcEEEEeCCCCCC-ceEEEccCCCEEEEEecCCCEEEEEEcCCCCCcceeEeec-----CCCCCCce
Q 018242 178 DKTGRLMKYDPATKQVTVLLGNLSFP-NGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQ-----LPGFPDNI 251 (359)
Q Consensus 178 ~~~g~v~~~d~~~~~~~~~~~~~~~p-~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~-----~~~~p~~i 251 (359)
+.-.+..||...+...... .+..| .+..+.|..+...++......-+..+..++ ....+.. +...++..
T Consensus 85 -~D~si~lwDl~~gs~l~ri-rf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~---~h~~Lp~d~d~dln~sas~~ 159 (405)
T KOG1273|consen 85 -RDWSIKLWDLLKGSPLKRI-RFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDP---KHSVLPKDDDGDLNSSASHG 159 (405)
T ss_pred -CCceeEEEeccCCCceeEE-EccCccceeeeccccCCeEEEEEecCCcEEEEecCC---ceeeccCCCccccccccccc
Confidence 2335777887666532211 12222 455566544444554444444555555432 1222211 11123334
Q ss_pred EECCCCCEEEEEecCCCccccccccCC-ccceeeecCCccc-eeeeeecccccCcceEEEEECCCCCEEEEEE
Q 018242 252 KRSPRGGFWVGIHSRRKGISKLVLSFP-WIGNVLIKLPIDI-VKIHSSLVKLSGNGGMAMRISEQGNVLEILE 322 (359)
Q Consensus 252 ~~d~~G~lwv~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 322 (359)
.+|+.|++.++....|. +.+++ .+-+..+.+.... +.+-++.+...+ ..+.+|-..+++++|.
T Consensus 160 ~fdr~g~yIitGtsKGk-----llv~~a~t~e~vas~rits~~~IK~I~~s~~g---~~liiNtsDRvIR~ye 224 (405)
T KOG1273|consen 160 VFDRRGKYIITGTSKGK-----LLVYDAETLECVASFRITSVQAIKQIIVSRKG---RFLIINTSDRVIRTYE 224 (405)
T ss_pred cccCCCCEEEEecCcce-----EEEEecchheeeeeeeechheeeeEEEEeccC---cEEEEecCCceEEEEe
Confidence 68899986555555554 34433 3445544443322 333333333332 3455676777777764
No 212
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=96.63 E-value=0.12 Score=45.39 Aligned_cols=157 Identities=13% Similarity=0.183 Sum_probs=92.0
Q ss_pred CceEEEccCCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEEeC
Q 018242 36 PESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIADA 115 (359)
Q Consensus 36 p~~i~~~~~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~~~ 115 (359)
-.+|.+.|.|..+.+++....+..||.++-+ -|. +.+ |.+ ...+....+.+++ .++||++..
T Consensus 219 vrsiSfHPsGefllvgTdHp~~rlYdv~T~Q--cfv--san------Pd~-------qht~ai~~V~Ys~-t~~lYvTaS 280 (430)
T KOG0640|consen 219 VRSISFHPSGEFLLVGTDHPTLRLYDVNTYQ--CFV--SAN------PDD-------QHTGAITQVRYSS-TGSLYVTAS 280 (430)
T ss_pred eeeEeecCCCceEEEecCCCceeEEecccee--Eee--ecC------ccc-------ccccceeEEEecC-CccEEEEec
Confidence 3589999999988899998889999988753 121 001 211 1123355677888 999999877
Q ss_pred CCc-EEEEeCCCCe-EEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCCcE
Q 018242 116 YFG-LLKVGPEGGL-ATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQV 193 (359)
Q Consensus 116 ~~~-i~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~ 193 (359)
.+| |-.+|--.++ ++.+.. ......+....+..+|+ |+-.+ +....|..|...+++.
T Consensus 281 kDG~IklwDGVS~rCv~t~~~---AH~gsevcSa~Ftkn~k--yiLsS----------------G~DS~vkLWEi~t~R~ 339 (430)
T KOG0640|consen 281 KDGAIKLWDGVSNRCVRTIGN---AHGGSEVCSAVFTKNGK--YILSS----------------GKDSTVKLWEISTGRM 339 (430)
T ss_pred cCCcEEeeccccHHHHHHHHh---hcCCceeeeEEEccCCe--EEeec----------------CCcceeeeeeecCCce
Confidence 665 6666644332 222211 11223455678899998 33322 2344566676666655
Q ss_pred EEEeCCC--C----CCceEEEccCCCEEEEEecCCCEEEEEEcC
Q 018242 194 TVLLGNL--S----FPNGVALSEDGNYILLAETTSCRILRYWLK 231 (359)
Q Consensus 194 ~~~~~~~--~----~p~gia~~~d~~~l~v~~~~~~~i~~~~~~ 231 (359)
.....+. . ...-..|.....+++..+...+.+..||..
T Consensus 340 l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaR 383 (430)
T KOG0640|consen 340 LKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDAR 383 (430)
T ss_pred EEEEecCCcccchhhhhhhhhcCccceEEccccccCceeecccc
Confidence 4332211 0 011122444445666667777889999854
No 213
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=96.63 E-value=0.052 Score=47.86 Aligned_cols=165 Identities=14% Similarity=0.095 Sum_probs=91.9
Q ss_pred CCCCCCceEEEccCCCeeEEecCCCEEEEEEcC-CcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCe
Q 018242 31 EGAIGPESLAFDALGEGPYTGVSDGRIIKWHQD-QRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGD 109 (359)
Q Consensus 31 ~~~~~p~~i~~~~~G~~l~~~~~~~~i~~~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~ 109 (359)
+++..+++++|++||..+|++.. .-|..+|.. .+...... .....+ .....+-...++++|.+-.
T Consensus 156 de~taAhsL~Fs~DGeqlfaGyk-rcirvFdt~RpGr~c~vy--------~t~~~~-----k~gq~giisc~a~sP~~~~ 221 (406)
T KOG2919|consen 156 DEYTAAHSLQFSPDGEQLFAGYK-RCIRVFDTSRPGRDCPVY--------TTVTKG-----KFGQKGIISCFAFSPMDSK 221 (406)
T ss_pred HhhhhheeEEecCCCCeEeeccc-ceEEEeeccCCCCCCcch--------hhhhcc-----cccccceeeeeeccCCCCc
Confidence 45678899999999997777766 468888863 22111000 000000 0001112345678876654
Q ss_pred -EEEEeCCCcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeC
Q 018242 110 -LYIADAYFGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDP 188 (359)
Q Consensus 110 -l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~ 188 (359)
+-++...+.+-.+..+++..-.+.. + ....+..+.+.++|+++|.+.. ....|.+||.
T Consensus 222 ~~a~gsY~q~~giy~~~~~~pl~llg---g-h~gGvThL~~~edGn~lfsGaR-----------------k~dkIl~WDi 280 (406)
T KOG2919|consen 222 TLAVGSYGQRVGIYNDDGRRPLQLLG---G-HGGGVTHLQWCEDGNKLFSGAR-----------------KDDKILCWDI 280 (406)
T ss_pred ceeeecccceeeeEecCCCCceeeec---c-cCCCeeeEEeccCcCeeccccc-----------------CCCeEEEEee
Confidence 4444544444444444443222221 1 2346778999999998888732 2347888887
Q ss_pred CCCcEEEEe---CCC-CCCceEEEc--cCCCEEEEEecCCCEEEEEEcCC
Q 018242 189 ATKQVTVLL---GNL-SFPNGVALS--EDGNYILLAETTSCRILRYWLKT 232 (359)
Q Consensus 189 ~~~~~~~~~---~~~-~~p~gia~~--~d~~~l~v~~~~~~~i~~~~~~~ 232 (359)
.- ....+. ... ..-+-|-|+ |+++ .+.+...++.|.+||+++
T Consensus 281 R~-~~~pv~~L~rhv~~TNQRI~FDld~~~~-~LasG~tdG~V~vwdlk~ 328 (406)
T KOG2919|consen 281 RY-SRDPVYALERHVGDTNQRILFDLDPKGE-ILASGDTDGSVRVWDLKD 328 (406)
T ss_pred hh-ccchhhhhhhhccCccceEEEecCCCCc-eeeccCCCccEEEEecCC
Confidence 52 111111 111 123445554 6676 566666788999999865
No 214
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=96.62 E-value=0.45 Score=42.03 Aligned_cols=175 Identities=14% Similarity=0.066 Sum_probs=96.2
Q ss_pred CCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCC--CeEEEEeCCCcEEE
Q 018242 44 LGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTN--GDLYIADAYFGLLK 121 (359)
Q Consensus 44 ~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~--g~l~v~~~~~~i~~ 121 (359)
+|+.+..+..+..|..||...+. +.. .+-...+..+.+-|.+.- .+|.-+...+.|..
T Consensus 52 s~~~~aSGssDetI~IYDm~k~~--qlg------------------~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~i 111 (362)
T KOG0294|consen 52 SGPYVASGSSDETIHIYDMRKRK--QLG------------------ILLSHAGSITALKFYPPLSKSHLLSGSDDGHIII 111 (362)
T ss_pred cceeEeccCCCCcEEEEeccchh--hhc------------------ceeccccceEEEEecCCcchhheeeecCCCcEEE
Confidence 46644556677899999987651 111 111122334555565422 25666554445777
Q ss_pred EeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCCcEEEEeCCCC
Q 018242 122 VGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQVTVLLGNLS 201 (359)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~ 201 (359)
++.+. +..+ ....+.. ..+++|+++|.|+ |-++..+ ++.+..||.-.|+...+..-..
T Consensus 112 w~~~~--W~~~-~slK~H~-~~Vt~lsiHPS~K-LALsVg~-----------------D~~lr~WNLV~Gr~a~v~~L~~ 169 (362)
T KOG0294|consen 112 WRVGS--WELL-KSLKAHK-GQVTDLSIHPSGK-LALSVGG-----------------DQVLRTWNLVRGRVAFVLNLKN 169 (362)
T ss_pred EEcCC--eEEe-eeecccc-cccceeEecCCCc-eEEEEcC-----------------CceeeeehhhcCccceeeccCC
Confidence 76543 3222 2122112 2489999999999 8887433 3456667765554433322223
Q ss_pred CCceEEEccCCCEEEEEecCCCEEEEEEcCCCCCcceeEeecCCCCCCceEECCCCCEEEEEec
Q 018242 202 FPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGGFWVGIHS 265 (359)
Q Consensus 202 ~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lwv~~~~ 265 (359)
.+.-+.|+|.|.+.++.. .+.|-.|.++....-. ....+..+-.+.++..+.+.+|...
T Consensus 170 ~at~v~w~~~Gd~F~v~~--~~~i~i~q~d~A~v~~---~i~~~~r~l~~~~l~~~~L~vG~d~ 228 (362)
T KOG0294|consen 170 KATLVSWSPQGDHFVVSG--RNKIDIYQLDNASVFR---EIENPKRILCATFLDGSELLVGGDN 228 (362)
T ss_pred cceeeEEcCCCCEEEEEe--ccEEEEEecccHhHhh---hhhccccceeeeecCCceEEEecCC
Confidence 456688999998666654 4567777664322110 1112333555666666667776543
No 215
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=96.58 E-value=0.22 Score=42.91 Aligned_cols=154 Identities=14% Similarity=0.055 Sum_probs=94.3
Q ss_pred CCceEEEccCCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEEe
Q 018242 35 GPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIAD 114 (359)
Q Consensus 35 ~p~~i~~~~~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~~ 114 (359)
.-+++.+|.+-+.+.++..+..+..||-++++... ..........+.|+. +|++.++.
T Consensus 54 avW~~Did~~s~~liTGSAD~t~kLWDv~tGk~la---------------------~~k~~~~Vk~~~F~~-~gn~~l~~ 111 (327)
T KOG0643|consen 54 AVWCCDIDWDSKHLITGSADQTAKLWDVETGKQLA---------------------TWKTNSPVKRVDFSF-GGNLILAS 111 (327)
T ss_pred eEEEEEecCCcceeeeccccceeEEEEcCCCcEEE---------------------EeecCCeeEEEeecc-CCcEEEEE
Confidence 44577777777767788888888889888773221 111223346788888 67766553
Q ss_pred CCC------cEEEEeCCCCeE-----EEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceE
Q 018242 115 AYF------GLLKVGPEGGLA-----TAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRL 183 (359)
Q Consensus 115 ~~~------~i~~~~~~~~~~-----~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v 183 (359)
..+ -|..++...... +++.. +. .+...+....+++-+. ..|+ +...|.|
T Consensus 112 tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~k-I~-t~~skit~a~Wg~l~~-~ii~-----------------Ghe~G~i 171 (327)
T KOG0643|consen 112 TDKQMGYTCFVSVFDIRDDSSDIDSEEPYLK-IP-TPDSKITSALWGPLGE-TIIA-----------------GHEDGSI 171 (327)
T ss_pred ehhhcCcceEEEEEEccCChhhhcccCceEE-ec-CCccceeeeeecccCC-EEEE-----------------ecCCCcE
Confidence 321 255665542210 11111 01 1224566778888888 4444 2346789
Q ss_pred EEEeCCCCcEEEEe--CCCCCCceEEEccCCCEEEEEecCCCEEEEEEcC
Q 018242 184 MKYDPATKQVTVLL--GNLSFPNGVALSEDGNYILLAETTSCRILRYWLK 231 (359)
Q Consensus 184 ~~~d~~~~~~~~~~--~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~ 231 (359)
-.||..++....-. .+....+.+.+++|.. .+++.+.+.+-..+|..
T Consensus 172 s~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T-~FiT~s~Dttakl~D~~ 220 (327)
T KOG0643|consen 172 SIYDARTGKELVDSDEEHSSKINDLQFSRDRT-YFITGSKDTTAKLVDVR 220 (327)
T ss_pred EEEEcccCceeeechhhhccccccccccCCcc-eEEecccCccceeeecc
Confidence 99999876433211 2234678899999986 78888888777778754
No 216
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=96.55 E-value=0.29 Score=45.26 Aligned_cols=145 Identities=14% Similarity=0.135 Sum_probs=83.3
Q ss_pred EEEEecCCCe-EEEEeC--CC---cEEEEeCCCCeEEEEeecCCCccccccceEEEe-CCCC-EEEEEeCCCccccccce
Q 018242 100 GLCFNKTNGD-LYIADA--YF---GLLKVGPEGGLATAVATQSEGIPFRFCNSLDID-QSTG-IIYFTDSSSQFQRRNHI 171 (359)
Q Consensus 100 gi~~~~~~g~-l~v~~~--~~---~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d-~~g~-~l~v~d~~~~~~~~~~~ 171 (359)
.+.+.+ +++ +++.-. .. .+..+|..++..+.+.......-........+- +++. ++|+++.
T Consensus 188 ~v~W~~-d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~---------- 256 (353)
T PF00930_consen 188 RVGWSP-DGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISER---------- 256 (353)
T ss_dssp EEEEEE-TTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEET----------
T ss_pred cceecC-CCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEc----------
Confidence 455667 455 777632 22 377888887766544432221111222344443 4444 5666641
Q ss_pred eeeeecCCCceEEEEeCCCCcEEEEeCCCCCC-ceEEEccCCCEEEEEecC----CCEEEEEEcC-CCCCcceeEeecCC
Q 018242 172 SVILSGDKTGRLMKYDPATKQVTVLLGNLSFP-NGVALSEDGNYILLAETT----SCRILRYWLK-TSKAGTIEIVAQLP 245 (359)
Q Consensus 172 ~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~p-~gia~~~d~~~l~v~~~~----~~~i~~~~~~-~~~~~~~~~~~~~~ 245 (359)
....+|+.++.+++..+.+..+.... .-+.++++++.+|..... ...|++.+++ +. ..+.+...
T Consensus 257 ------~G~~hly~~~~~~~~~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~---~~~~LT~~- 326 (353)
T PF00930_consen 257 ------DGYRHLYLYDLDGGKPRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGG---EPKCLTCE- 326 (353)
T ss_dssp ------TSSEEEEEEETTSSEEEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETT---EEEESSTT-
T ss_pred ------CCCcEEEEEcccccceeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCC---CeEeccCC-
Confidence 23457999999887766543333223 457788998889988876 3489999876 32 22333222
Q ss_pred CCCC-ceEECCCCCEEEEEec
Q 018242 246 GFPD-NIKRSPRGGFWVGIHS 265 (359)
Q Consensus 246 ~~p~-~i~~d~~G~lwv~~~~ 265 (359)
.... .+.++++|+.++-+..
T Consensus 327 ~~~~~~~~~Spdg~y~v~~~s 347 (353)
T PF00930_consen 327 DGDHYSASFSPDGKYYVDTYS 347 (353)
T ss_dssp SSTTEEEEE-TTSSEEEEEEE
T ss_pred CCCceEEEECCCCCEEEEEEc
Confidence 2234 7899999998886554
No 217
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=96.48 E-value=0.13 Score=43.60 Aligned_cols=155 Identities=8% Similarity=0.076 Sum_probs=95.3
Q ss_pred CCCceEEEccCCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEE
Q 018242 34 IGPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIA 113 (359)
Q Consensus 34 ~~p~~i~~~~~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~ 113 (359)
.+-..+.+..+-.+++.+..+..+..||=....++.+. .+.........+.+. +.++..+
T Consensus 102 aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQ------------------ildea~D~V~Si~v~--~heIvaG 161 (307)
T KOG0316|consen 102 AQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQ------------------ILDEAKDGVSSIDVA--EHEIVAG 161 (307)
T ss_pred ceeeEEEecCcceEEEeccccceeEEEEcccCCCCccc------------------hhhhhcCceeEEEec--ccEEEee
Confidence 35567888888887888888899999998776444332 222222223334333 4555555
Q ss_pred eCCCcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCCcE
Q 018242 114 DAYFGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQV 193 (359)
Q Consensus 114 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~ 193 (359)
...+.+..||+..|.... + .-+ ..++.+.++++|+...++ ...+.+..+|.++|++
T Consensus 162 S~DGtvRtydiR~G~l~s--D-y~g---~pit~vs~s~d~nc~La~------------------~l~stlrLlDk~tGkl 217 (307)
T KOG0316|consen 162 SVDGTVRTYDIRKGTLSS--D-YFG---HPITSVSFSKDGNCSLAS------------------SLDSTLRLLDKETGKL 217 (307)
T ss_pred ccCCcEEEEEeecceeeh--h-hcC---CcceeEEecCCCCEEEEe------------------eccceeeecccchhHH
Confidence 545558889987776431 1 111 245778999999955555 2345788889888875
Q ss_pred EEEeCC---CCCCceEEEccCCCEEEEEecCCCEEEEEEcCCC
Q 018242 194 TVLLGN---LSFPNGVALSEDGNYILLAETTSCRILRYWLKTS 233 (359)
Q Consensus 194 ~~~~~~---~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~ 233 (359)
.....+ ...--..++... ....++.++++.++.||+-..
T Consensus 218 L~sYkGhkn~eykldc~l~qs-dthV~sgSEDG~Vy~wdLvd~ 259 (307)
T KOG0316|consen 218 LKSYKGHKNMEYKLDCCLNQS-DTHVFSGSEDGKVYFWDLVDE 259 (307)
T ss_pred HHHhcccccceeeeeeeeccc-ceeEEeccCCceEEEEEeccc
Confidence 432211 111223445433 346888899999999998654
No 218
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=96.48 E-value=1 Score=44.45 Aligned_cols=179 Identities=17% Similarity=0.154 Sum_probs=99.6
Q ss_pred ceEEEccCCCeeEEecCCCEEEEEEcCCcc-eEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEEeC
Q 018242 37 ESLAFDALGEGPYTGVSDGRIIKWHQDQRR-WLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIADA 115 (359)
Q Consensus 37 ~~i~~~~~G~~l~~~~~~~~i~~~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~~~ 115 (359)
.+++++++.. +..+..++.+-.||.++.+ .+++ ..+...+..|-|-+..+.++..
T Consensus 377 Rsl~vS~d~~-~~~Sga~~SikiWn~~t~kciRTi-----------------------~~~y~l~~~Fvpgd~~Iv~G~k 432 (888)
T KOG0306|consen 377 RSLCVSSDSI-LLASGAGESIKIWNRDTLKCIRTI-----------------------TCGYILASKFVPGDRYIVLGTK 432 (888)
T ss_pred eEEEeecCce-eeeecCCCcEEEEEccCcceeEEe-----------------------ccccEEEEEecCCCceEEEecc
Confidence 4777877776 5555555789999998752 2222 1234556667774555666654
Q ss_pred CCcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeC-------
Q 018242 116 YFGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDP------- 188 (359)
Q Consensus 116 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~------- 188 (359)
.+.+..||......- ...+. ....+..+...||++ =+++-+. +..|-.||-
T Consensus 433 ~Gel~vfdlaS~~l~---Eti~A-HdgaIWsi~~~pD~~-g~vT~sa-----------------DktVkfWdf~l~~~~~ 490 (888)
T KOG0306|consen 433 NGELQVFDLASASLV---ETIRA-HDGAIWSISLSPDNK-GFVTGSA-----------------DKTVKFWDFKLVVSVP 490 (888)
T ss_pred CCceEEEEeehhhhh---hhhhc-cccceeeeeecCCCC-ceEEecC-----------------CcEEEEEeEEEEeccC
Confidence 555888887654321 11111 123567788899988 5555322 111222211
Q ss_pred CCC-cEEEEeC--CC---CCCceEEEccCCCEEEEEecCCCEEEEEEcCCCCCcceeEeecC--CCCC-CceEECCCCCE
Q 018242 189 ATK-QVTVLLG--NL---SFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQL--PGFP-DNIKRSPRGGF 259 (359)
Q Consensus 189 ~~~-~~~~~~~--~~---~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~--~~~p-~~i~~d~~G~l 259 (359)
.+. ++..+.+ .+ ...-.+.++||+++|-++. -++++.+|-++.- +-+..+ +.+| -.|.+++|+++
T Consensus 491 gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsL-LdnTVkVyflDtl-----KFflsLYGHkLPV~smDIS~DSkl 564 (888)
T KOG0306|consen 491 GTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSL-LDNTVKVYFLDTL-----KFFLSLYGHKLPVLSMDISPDSKL 564 (888)
T ss_pred cccceeeeeccceEEeccccEEEEEEcCCCcEEEEEe-ccCeEEEEEecce-----eeeeeecccccceeEEeccCCcCe
Confidence 111 1000100 01 1234667899999766665 5679999987653 223322 2234 45777888888
Q ss_pred EEEEecCC
Q 018242 260 WVGIHSRR 267 (359)
Q Consensus 260 wv~~~~~~ 267 (359)
.++.....
T Consensus 565 ivTgSADK 572 (888)
T KOG0306|consen 565 IVTGSADK 572 (888)
T ss_pred EEeccCCC
Confidence 88766544
No 219
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=96.47 E-value=0.87 Score=43.53 Aligned_cols=173 Identities=18% Similarity=0.203 Sum_probs=96.3
Q ss_pred ceEEEccCCCeeE-EecCCCEEEEEEcCCcceEE----------EeecCCCCCCCCCCcccccccccccCCc------c-
Q 018242 37 ESLAFDALGEGPY-TGVSDGRIIKWHQDQRRWLH----------FARTSPNRDGCEGAYEYDHAAKEHICGR------P- 98 (359)
Q Consensus 37 ~~i~~~~~G~~l~-~~~~~~~i~~~d~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~------p- 98 (359)
..|-+.+||+.++ ++++.-.|.+||...-+.+. |-...+.+.-...-...+.+++....+. |
T Consensus 55 t~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~G~hy~~RIP~ 134 (703)
T KOG2321|consen 55 TRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYGRHYRTRIPK 134 (703)
T ss_pred ceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeeehhhcCeeeeeecCc
Confidence 4788999999666 35555788888875432222 2211111110000000011122111111 1
Q ss_pred --eEEEEecCCCeEEEEeCCCcEEEEeCCCCeEE-EEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeee
Q 018242 99 --LGLCFNKTNGDLYIADAYFGLLKVGPEGGLAT-AVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVIL 175 (359)
Q Consensus 99 --~gi~~~~~~g~l~v~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~ 175 (359)
..|+++.-.-.||++..+..|||++++.|.+- ++.. .....|.+.+.+-.. |..+
T Consensus 135 ~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~-----~~~~lN~v~in~~hg-Lla~---------------- 192 (703)
T KOG2321|consen 135 FGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFET-----DSGELNVVSINEEHG-LLAC---------------- 192 (703)
T ss_pred CCccccccCCCccEEEeecCcceEEEEcccccccccccc-----ccccceeeeecCccc-eEEe----------------
Confidence 13455554667888877778999999988753 2211 123456677777766 6555
Q ss_pred ecCCCceEEEEeCCCCcEE-EEe---C--------CCCCCceEEEccCCCEEEEEecCCCEEEEEEcCCC
Q 018242 176 SGDKTGRLMKYDPATKQVT-VLL---G--------NLSFPNGVALSEDGNYILLAETTSCRILRYWLKTS 233 (359)
Q Consensus 176 ~~~~~g~v~~~d~~~~~~~-~~~---~--------~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~ 233 (359)
++..|.|-.||+.+.... .+. . ....+..+.|..||= -+-.++.++.++.||+...
T Consensus 193 -Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL-~~aVGts~G~v~iyDLRa~ 260 (703)
T KOG2321|consen 193 -GTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGL-HVAVGTSTGSVLIYDLRAS 260 (703)
T ss_pred -cccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCce-eEEeeccCCcEEEEEcccC
Confidence 344677888988764321 111 1 123356888876664 4556677889999998653
No 220
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=96.47 E-value=0.42 Score=39.87 Aligned_cols=182 Identities=17% Similarity=0.140 Sum_probs=95.2
Q ss_pred EEeeCCCCCCceEEEccCCCeeEEecCC---CEEEEEEcCCcceEEEeecCCCCCCCCCCccccccccc--ccCCcceEE
Q 018242 27 QYQIEGAIGPESLAFDALGEGPYTGVSD---GRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKE--HICGRPLGL 101 (359)
Q Consensus 27 ~~~~~~~~~p~~i~~~~~G~~l~~~~~~---~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~p~gi 101 (359)
+++.+.-..-.++..+ +|. ++.++.. ..|+++|..+++..... .+. ...+ -|+
T Consensus 39 ~yphDs~sfTQGL~~~-~g~-i~esTG~yg~S~ir~~~L~~gq~~~s~------------------~l~~~~~Fg--EGi 96 (262)
T COG3823 39 TYPHDSTSFTQGLEYL-DGH-ILESTGLYGFSKIRVSDLTTGQEIFSE------------------KLAPDTVFG--EGI 96 (262)
T ss_pred eccCchhhhhcceeee-CCE-EEEeccccccceeEEEeccCceEEEEe------------------ecCCccccc--cce
Confidence 5555555566677776 445 7766543 68999999977543321 111 0111 133
Q ss_pred EEecCCCeEEEEeCCCc-EEEEeCCCCeEEEEee-cCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCC
Q 018242 102 CFNKTNGDLYIADAYFG-LLKVGPEGGLATAVAT-QSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDK 179 (359)
Q Consensus 102 ~~~~~~g~l~v~~~~~~-i~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~ 179 (359)
.-. ++.+|.-++..+ -+++|.++-+ .+.. ..++ .-.+++-|.+ + ||.+|-
T Consensus 97 t~~--gd~~y~LTw~egvaf~~d~~t~~--~lg~~~y~G----eGWgLt~d~~-~-LimsdG------------------ 148 (262)
T COG3823 97 TKL--GDYFYQLTWKEGVAFKYDADTLE--ELGRFSYEG----EGWGLTSDDK-N-LIMSDG------------------ 148 (262)
T ss_pred eec--cceEEEEEeccceeEEEChHHhh--hhcccccCC----cceeeecCCc-c-eEeeCC------------------
Confidence 322 677888887766 4567766432 1111 1111 2235555433 3 777743
Q ss_pred CceEEEEeCCCC----cEEEEeCC--CCCCceEEEccCCCEEEEEecCCCEEEEEEcCCCCCcceeEeecC---------
Q 018242 180 TGRLMKYDPATK----QVTVLLGN--LSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQL--------- 244 (359)
Q Consensus 180 ~g~v~~~d~~~~----~~~~~~~~--~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~--------- 244 (359)
...+...||++- ++.....+ ...-|-+.+ -||. +|..-..+.+|.+++.+.++ ...+.++
T Consensus 149 satL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~-VdG~-lyANVw~t~~I~rI~p~sGr---V~~widlS~L~~~~~~ 223 (262)
T COG3823 149 SATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEW-VDGE-LYANVWQTTRIARIDPDSGR---VVAWIDLSGLLKELNL 223 (262)
T ss_pred ceEEEecCHHHhhhcceEEEEECCeecccccceee-eccE-EEEeeeeecceEEEcCCCCc---EEEEEEccCCchhcCc
Confidence 235666777642 22221221 112234443 2554 66666667788888865443 2222221
Q ss_pred ----CCCCCceEECCCC-CEEEEE
Q 018242 245 ----PGFPDNIKRSPRG-GFWVGI 263 (359)
Q Consensus 245 ----~~~p~~i~~d~~G-~lwv~~ 263 (359)
...++||+.|+++ +++++.
T Consensus 224 ~~~~~nvlNGIA~~~~~~r~~iTG 247 (262)
T COG3823 224 DKSNDNVLNGIAHDPQQDRFLITG 247 (262)
T ss_pred cccccccccceeecCcCCeEEEec
Confidence 1247789998876 677753
No 221
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=96.45 E-value=0.0052 Score=33.68 Aligned_cols=28 Identities=18% Similarity=0.156 Sum_probs=23.0
Q ss_pred CCCCceEEEccCCCeeEEecCCCEEEEE
Q 018242 33 AIGPESLAFDALGEGPYTGVSDGRIIKW 60 (359)
Q Consensus 33 ~~~p~~i~~~~~G~~l~~~~~~~~i~~~ 60 (359)
+..|.+++++++|+++.++..+++|.++
T Consensus 1 f~~P~gvav~~~g~i~VaD~~n~rV~vf 28 (28)
T PF01436_consen 1 FNYPHGVAVDSDGNIYVADSGNHRVQVF 28 (28)
T ss_dssp BSSEEEEEEETTSEEEEEECCCTEEEEE
T ss_pred CcCCcEEEEeCCCCEEEEECCCCEEEEC
Confidence 4689999999999966677888888764
No 222
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=96.44 E-value=0.34 Score=43.76 Aligned_cols=175 Identities=14% Similarity=0.149 Sum_probs=106.4
Q ss_pred CCceEEEccCCCeeEEecCCCEEEEEEcCCcceEEEeecCC-CCCCCCC-C-ccc--ccccccccCCcceEEEEecCCCe
Q 018242 35 GPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSP-NRDGCEG-A-YEY--DHAAKEHICGRPLGLCFNKTNGD 109 (359)
Q Consensus 35 ~p~~i~~~~~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~-~-~~~--~~~~~~~~~~~p~gi~~~~~~g~ 109 (359)
.-+++..+++|.++..+..+..|-.|+..+.+...+..... .+..... + .+. +.+.+.........+.+++ ...
T Consensus 195 ~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d-~~v 273 (423)
T KOG0313|consen 195 SVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD-ATV 273 (423)
T ss_pred ceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC-CCc
Confidence 45688899999978888999999999932221111110000 0000000 0 000 0011111112234566776 788
Q ss_pred EEEEeCCCcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCC
Q 018242 110 LYIADAYFGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPA 189 (359)
Q Consensus 110 l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~ 189 (359)
+|-+.+.+.|.++|.+++....-.. . ....+.+...+..+ |.++-.. .-.+..+||.
T Consensus 274 ~yS~SwDHTIk~WDletg~~~~~~~--~---~ksl~~i~~~~~~~-Ll~~gss-----------------dr~irl~DPR 330 (423)
T KOG0313|consen 274 IYSVSWDHTIKVWDLETGGLKSTLT--T---NKSLNCISYSPLSK-LLASGSS-----------------DRHIRLWDPR 330 (423)
T ss_pred eEeecccceEEEEEeecccceeeee--c---CcceeEeecccccc-eeeecCC-----------------CCceeecCCC
Confidence 8888777789999998876432111 1 12456677778777 7777322 3357889997
Q ss_pred CCcEEE----EeCCCCCCceEEEccCCCEEEEEecCCCEEEEEEcCCC
Q 018242 190 TKQVTV----LLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTS 233 (359)
Q Consensus 190 ~~~~~~----~~~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~ 233 (359)
++.-.. +..+.....++.++|...+++++.+.++++..||....
T Consensus 331 ~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~ 378 (423)
T KOG0313|consen 331 TGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRST 378 (423)
T ss_pred CCCCceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccC
Confidence 654322 23444567889999998899999999999999997654
No 223
>PRK13684 Ycf48-like protein; Provisional
Probab=96.44 E-value=0.72 Score=42.28 Aligned_cols=190 Identities=14% Similarity=0.191 Sum_probs=88.8
Q ss_pred eCCCCCCceEEEccCCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCe
Q 018242 30 IEGAIGPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGD 109 (359)
Q Consensus 30 ~~~~~~p~~i~~~~~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~ 109 (359)
.+.-....+|+|..+.+.++++. .+.|++=.-.+..|+..... ..........+.+.. ++
T Consensus 42 ~~~~~~l~~v~F~d~~~g~avG~-~G~il~T~DgG~tW~~~~~~-----------------~~~~~~~l~~v~~~~--~~ 101 (334)
T PRK13684 42 LPTEANLLDIAFTDPNHGWLVGS-NRTLLETNDGGETWEERSLD-----------------LPEENFRLISISFKG--DE 101 (334)
T ss_pred cCCCCceEEEEEeCCCcEEEEEC-CCEEEEEcCCCCCceECccC-----------------CcccccceeeeEEcC--Cc
Confidence 34334666888886666344554 57777654444446543210 000011133565653 45
Q ss_pred EEEEeCCCcEEEEeCCCC-eEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeC
Q 018242 110 LYIADAYFGLLKVGPEGG-LATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDP 188 (359)
Q Consensus 110 l~v~~~~~~i~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~ 188 (359)
.|++...+.|++ ..++| ..+.+... ...+ ..+..+....++. +|+. ...|.|++-+.
T Consensus 102 ~~~~G~~g~i~~-S~DgG~tW~~~~~~-~~~~-~~~~~i~~~~~~~-~~~~------------------g~~G~i~~S~D 159 (334)
T PRK13684 102 GWIVGQPSLLLH-TTDGGKNWTRIPLS-EKLP-GSPYLITALGPGT-AEMA------------------TNVGAIYRTTD 159 (334)
T ss_pred EEEeCCCceEEE-ECCCCCCCeEccCC-cCCC-CCceEEEEECCCc-ceee------------------eccceEEEECC
Confidence 677654444555 34443 34433211 0011 1233444444444 5555 22356776654
Q ss_pred CCCcEEEEeCCC-CCCceEEEccCCCEEEEEecCCCEEEEEEcCCCCCcceeEeec-CCCCCCceEECCCCCEEEEEec
Q 018242 189 ATKQVTVLLGNL-SFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQ-LPGFPDNIKRSPRGGFWVGIHS 265 (359)
Q Consensus 189 ~~~~~~~~~~~~-~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~p~~i~~d~~G~lwv~~~~ 265 (359)
.+...+.+.... ...+++++.+++. ++.-...+.+++-. +.... ..+.... ......++.+.++|++|+....
T Consensus 160 gG~tW~~~~~~~~g~~~~i~~~~~g~--~v~~g~~G~i~~s~-~~gg~-tW~~~~~~~~~~l~~i~~~~~g~~~~vg~~ 234 (334)
T PRK13684 160 GGKNWEALVEDAAGVVRNLRRSPDGK--YVAVSSRGNFYSTW-EPGQT-AWTPHQRNSSRRLQSMGFQPDGNLWMLARG 234 (334)
T ss_pred CCCCceeCcCCCcceEEEEEECCCCe--EEEEeCCceEEEEc-CCCCC-eEEEeeCCCcccceeeeEcCCCCEEEEecC
Confidence 444544433222 2245777777764 33333445565531 11111 1111111 1223466788788888886544
No 224
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=96.40 E-value=0.042 Score=49.84 Aligned_cols=151 Identities=17% Similarity=0.198 Sum_probs=95.6
Q ss_pred ceEEEccCCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEEeCC
Q 018242 37 ESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIADAY 116 (359)
Q Consensus 37 ~~i~~~~~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~~~~ 116 (359)
.++.++++|..+..+..+|.|-.|+++-+-++.+. .+.....+.++|++ ++..|++-..
T Consensus 142 r~m~ws~~g~wmiSgD~gG~iKyWqpnmnnVk~~~--------------------ahh~eaIRdlafSp-nDskF~t~Sd 200 (464)
T KOG0284|consen 142 RTMKWSHNGTWMISGDKGGMIKYWQPNMNNVKIIQ--------------------AHHAEAIRDLAFSP-NDSKFLTCSD 200 (464)
T ss_pred eeEEEccCCCEEEEcCCCceEEecccchhhhHHhh--------------------HhhhhhhheeccCC-CCceeEEecC
Confidence 48889999995556667778888998876333221 11123467899999 6666665444
Q ss_pred Cc-EEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCCcEEE
Q 018242 117 FG-LLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQVTV 195 (359)
Q Consensus 117 ~~-i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~ 195 (359)
++ |..+|..-.+-+.... . ....+..+.+.|... +.++ ++...-|-.+||.++....
T Consensus 201 Dg~ikiWdf~~~kee~vL~-G---HgwdVksvdWHP~kg-Lias-----------------gskDnlVKlWDprSg~cl~ 258 (464)
T KOG0284|consen 201 DGTIKIWDFRMPKEERVLR-G---HGWDVKSVDWHPTKG-LIAS-----------------GSKDNLVKLWDPRSGSCLA 258 (464)
T ss_pred CCeEEEEeccCCchhheec-c---CCCCcceeccCCccc-eeEE-----------------ccCCceeEeecCCCcchhh
Confidence 44 5556654333222211 1 223566788888877 6665 2334467789999876543
Q ss_pred -EeCCCCCCceEEEccCCCEEEEEecCCCEEEEEEcC
Q 018242 196 -LLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLK 231 (359)
Q Consensus 196 -~~~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~ 231 (359)
+.......-++.|.+++++ +.+.+.+..+..||+.
T Consensus 259 tlh~HKntVl~~~f~~n~N~-Llt~skD~~~kv~DiR 294 (464)
T KOG0284|consen 259 TLHGHKNTVLAVKFNPNGNW-LLTGSKDQSCKVFDIR 294 (464)
T ss_pred hhhhccceEEEEEEcCCCCe-eEEccCCceEEEEehh
Confidence 2333445668889999974 5566677889999975
No 225
>COG3211 PhoX Predicted phosphatase [General function prediction only]
Probab=96.39 E-value=0.047 Score=51.96 Aligned_cols=123 Identities=19% Similarity=0.231 Sum_probs=72.1
Q ss_pred CCCCCCceEEEccC-CCeeEEecCC----------------CEEEEEEcCCc-------ceEEEeecCCCCCCCCCCccc
Q 018242 31 EGAIGPESLAFDAL-GEGPYTGVSD----------------GRIIKWHQDQR-------RWLHFARTSPNRDGCEGAYEY 86 (359)
Q Consensus 31 ~~~~~p~~i~~~~~-G~~l~~~~~~----------------~~i~~~d~~~~-------~~~~~~~~~~~~~~~~~~~~~ 86 (359)
..+.+||+|++.|. |.++++.+++ |.|++|=+.++ +|..|......... ...+..
T Consensus 414 T~mdRpE~i~~~p~~g~Vy~~lTNn~~r~~~~aNpr~~n~~G~I~r~~p~~~d~t~~~ftWdlF~~aG~~~~~-~~~~~~ 492 (616)
T COG3211 414 TPMDRPEWIAVNPGTGEVYFTLTNNGKRSDDAANPRAKNGYGQIVRWIPATGDHTDTKFTWDLFVEAGNPSVL-EGGASA 492 (616)
T ss_pred ccccCccceeecCCcceEEEEeCCCCccccccCCCcccccccceEEEecCCCCccCccceeeeeeecCCcccc-cccccc
Confidence 35679999999986 5644444433 57899988765 56666644322111 000000
Q ss_pred ccccccccCCcceEEEEecCCCeEEEEeCCC---------cEEE---EeCCCCeEEEEeecCCCccccccceEEEeCCCC
Q 018242 87 DHAAKEHICGRPLGLCFNKTNGDLYIADAYF---------GLLK---VGPEGGLATAVATQSEGIPFRFCNSLDIDQSTG 154 (359)
Q Consensus 87 ~~~~~~~~~~~p~gi~~~~~~g~l~v~~~~~---------~i~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~ 154 (359)
-+. ......|.+|+||+ .|+|||++... |+.- =++++++++.+.... ....+.+.+++|||+
T Consensus 493 -~~~-~~~f~~PDnl~fD~-~GrLWi~TDg~~s~~~~~~~G~~~m~~~~p~~g~~~rf~t~P---~g~E~tG~~FspD~~ 566 (616)
T COG3211 493 -NIN-ANWFNSPDNLAFDP-WGRLWIQTDGSGSTLRNRFRGVTQMLTPDPKTGTIKRFLTGP---IGCEFTGPCFSPDGK 566 (616)
T ss_pred -Ccc-cccccCCCceEECC-CCCEEEEecCCCCccCcccccccccccCCCccceeeeeccCC---CcceeecceeCCCCc
Confidence 000 12234588999999 99999986432 2221 234455555443211 123456789999999
Q ss_pred EEEEEe
Q 018242 155 IIYFTD 160 (359)
Q Consensus 155 ~l~v~d 160 (359)
.+||.-
T Consensus 567 TlFV~v 572 (616)
T COG3211 567 TLFVNV 572 (616)
T ss_pred eEEEEe
Confidence 888884
No 226
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=96.33 E-value=0.9 Score=42.26 Aligned_cols=149 Identities=15% Similarity=0.140 Sum_probs=82.8
Q ss_pred EccCCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEEeCCCcEE
Q 018242 41 FDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIADAYFGLL 120 (359)
Q Consensus 41 ~~~~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~~~~~~i~ 120 (359)
...+|+ +|+...+|.|+.+|++++......... ........ ++... +|++|+++..+.++
T Consensus 65 ~~~dg~-v~~~~~~G~i~A~d~~~g~~~W~~~~~---------------~~~~~~~~--~~~~~--~G~i~~g~~~g~~y 124 (370)
T COG1520 65 ADGDGT-VYVGTRDGNIFALNPDTGLVKWSYPLL---------------GAVAQLSG--PILGS--DGKIYVGSWDGKLY 124 (370)
T ss_pred EeeCCe-EEEecCCCcEEEEeCCCCcEEecccCc---------------CcceeccC--ceEEe--CCeEEEecccceEE
Confidence 666788 888888889999999987532211000 00011111 22233 89999998665599
Q ss_pred EEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCCcEEEEeCC-
Q 018242 121 KVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQVTVLLGN- 199 (359)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~- 199 (359)
.+|.++|+..-... ... . .....-.+-.++. +|+.. ..+.++.++.++++.......
T Consensus 125 ~ld~~~G~~~W~~~-~~~-~-~~~~~~~v~~~~~-v~~~s------------------~~g~~~al~~~tG~~~W~~~~~ 182 (370)
T COG1520 125 ALDASTGTLVWSRN-VGG-S-PYYASPPVVGDGT-VYVGT------------------DDGHLYALNADTGTLKWTYETP 182 (370)
T ss_pred EEECCCCcEEEEEe-cCC-C-eEEecCcEEcCcE-EEEec------------------CCCeEEEEEccCCcEEEEEecC
Confidence 99997776543322 111 0 1111224445677 88872 245789999888877654211
Q ss_pred ----CCCCceEEEccCCCEEEEEecC-CCEEEEEEcCCC
Q 018242 200 ----LSFPNGVALSEDGNYILLAETT-SCRILRYWLKTS 233 (359)
Q Consensus 200 ----~~~p~gia~~~d~~~l~v~~~~-~~~i~~~~~~~~ 233 (359)
........ ..++ .+|+.... +..++.++...+
T Consensus 183 ~~~~~~~~~~~~-~~~~-~vy~~~~~~~~~~~a~~~~~G 219 (370)
T COG1520 183 APLSLSIYGSPA-IASG-TVYVGSDGYDGILYALNAEDG 219 (370)
T ss_pred CccccccccCce-eecc-eEEEecCCCcceEEEEEccCC
Confidence 11111112 2233 36776543 446888887443
No 227
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=96.19 E-value=0.37 Score=47.52 Aligned_cols=150 Identities=19% Similarity=0.223 Sum_probs=83.7
Q ss_pred CCCeeEEecCC------CEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEEeCCC
Q 018242 44 LGEGPYTGVSD------GRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIADAYF 117 (359)
Q Consensus 44 ~G~~l~~~~~~------~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~~~~~ 117 (359)
+|.++.++-.+ ..+.+||+.+++|+..+... ....-.+++.- +|.||+....+
T Consensus 332 ~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~-------------------~~R~~~~v~~l--~g~iYavGG~d 390 (571)
T KOG4441|consen 332 NGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMN-------------------TKRSDFGVAVL--DGKLYAVGGFD 390 (571)
T ss_pred CCEEEEEccccCCCcccceEEEecCCCCceeccCCcc-------------------CccccceeEEE--CCEEEEEeccc
Confidence 34534455444 46789999999887654211 11112345444 78999864332
Q ss_pred ------cEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCC
Q 018242 118 ------GLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATK 191 (359)
Q Consensus 118 ------~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~ 191 (359)
.+-+||+++.+++.+..-.. ...-.+ +..-+|+ ||+.-.... .......+.+|||.++
T Consensus 391 g~~~l~svE~YDp~~~~W~~va~m~~---~r~~~g-v~~~~g~-iYi~GG~~~-----------~~~~l~sve~YDP~t~ 454 (571)
T KOG4441|consen 391 GEKSLNSVECYDPVTNKWTPVAPMLT---RRSGHG-VAVLGGK-LYIIGGGDG-----------SSNCLNSVECYDPETN 454 (571)
T ss_pred cccccccEEEecCCCCcccccCCCCc---ceeeeE-EEEECCE-EEEEcCcCC-----------CccccceEEEEcCCCC
Confidence 38899999999876543111 111122 3334677 999832100 0002246899999998
Q ss_pred cEEEEeCCCCCC---ceEEEccCCCEEEEEecCCC-----EEEEEEcCCC
Q 018242 192 QVTVLLGNLSFP---NGVALSEDGNYILLAETTSC-----RILRYWLKTS 233 (359)
Q Consensus 192 ~~~~~~~~~~~p---~gia~~~d~~~l~v~~~~~~-----~i~~~~~~~~ 233 (359)
..+... .+..+ .|++.. ++ .||+....++ .+.+||...+
T Consensus 455 ~W~~~~-~M~~~R~~~g~a~~-~~-~iYvvGG~~~~~~~~~VE~ydp~~~ 501 (571)
T KOG4441|consen 455 TWTLIA-PMNTRRSGFGVAVL-NG-KIYVVGGFDGTSALSSVERYDPETN 501 (571)
T ss_pred ceeecC-CcccccccceEEEE-CC-EEEEECCccCCCccceEEEEcCCCC
Confidence 876543 22222 344443 33 4888765442 4777875443
No 228
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=96.08 E-value=1.2 Score=41.73 Aligned_cols=254 Identities=13% Similarity=0.077 Sum_probs=105.0
Q ss_pred cCCCEEEEeeCCC-CCCceEEEc-----------cCCCeeEEe-cCCCEEEEEEcCCcce--EEEeecCCCCCCCCCCcc
Q 018242 21 STQGVVQYQIEGA-IGPESLAFD-----------ALGEGPYTG-VSDGRIIKWHQDQRRW--LHFARTSPNRDGCEGAYE 85 (359)
Q Consensus 21 ~~~~~~~~~~~~~-~~p~~i~~~-----------~~G~~l~~~-~~~~~i~~~d~~~~~~--~~~~~~~~~~~~~~~~~~ 85 (359)
++|.+-++..+.. ...+-.=+. .+-+.||+. ...++|+.+|..++.. +.... ..|.+
T Consensus 51 YgqVIhrl~mp~~GDElHH~GWNaCSsc~~~~~~~~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~Kv--------Ie~~e 122 (461)
T PF05694_consen 51 YGQVIHRLPMPNRGDELHHSGWNACSSCHYGDPSKERRYLILPGLRSSRIYVIDTKTDPRKPRLHKV--------IEPEE 122 (461)
T ss_dssp TTSEEEEEE-SSS---B---EES--GGSTT--TT--S-EEEEEBTTT--EEEEE--S-TTS-EEEEE--------E-HHH
T ss_pred cccEEEEEeCCCCCCccccccCcccccccCCCCcccCCcEEeeeeccCcEEEEECCCCCCCCceEee--------eCHHH
Confidence 3566667777654 455544443 234456654 4668999999875410 10000 00000
Q ss_pred cccccccccCCcceEEEEecCCCeEEEEeCC-------CcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEE
Q 018242 86 YDHAAKEHICGRPLGLCFNKTNGDLYIADAY-------FGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYF 158 (359)
Q Consensus 86 ~~~~~~~~~~~~p~gi~~~~~~g~l~v~~~~-------~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v 158 (359)
+........|+.....+ +|+++|+..+ +++..+|-++-++.-.-.. ......+..++-..|..+ +.|
T Consensus 123 ---v~~k~g~s~PHT~Hclp-~G~imIS~lGd~~G~g~Ggf~llD~~tf~v~g~We~-~~~~~~~gYDfw~qpr~n-vMi 196 (461)
T PF05694_consen 123 ---VFEKTGLSRPHTVHCLP-DGRIMISALGDADGNGPGGFVLLDGETFEVKGRWEK-DRGPQPFGYDFWYQPRHN-VMI 196 (461)
T ss_dssp ---HHHHH-EEEEEEEEE-S-S--EEEEEEEETTS-S--EEEEE-TTT--EEEE--S-B-TT------EEEETTTT-EEE
T ss_pred ---HHhhcCCCCCceeeecC-CccEEEEeccCCCCCCCCcEEEEcCccccccceecc-CCCCCCCCCCeEEcCCCC-EEE
Confidence 00011224577776777 8988887432 2588888887655432222 112234667888999999 777
Q ss_pred EeCCCcccc--cccee-eeeecCCCceEEEEeCCCCcEEEEeCCC---CCCceEEE--ccCCCEEEEEecCCCEEEEEEc
Q 018242 159 TDSSSQFQR--RNHIS-VILSGDKTGRLMKYDPATKQVTVLLGNL---SFPNGVAL--SEDGNYILLAETTSCRILRYWL 230 (359)
Q Consensus 159 ~d~~~~~~~--~~~~~-~~~~~~~~g~v~~~d~~~~~~~~~~~~~---~~p~gia~--~~d~~~l~v~~~~~~~i~~~~~ 230 (359)
+.....+.. ..... .+..+....++..||-.+++..+...-. ..|-.+-+ +|+..+-|+....+..|++|..
T Consensus 197 SSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k 276 (461)
T PF05694_consen 197 SSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYK 276 (461)
T ss_dssp E-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE
T ss_pred EeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEE
Confidence 743221110 00100 1111122346888998877766543211 22434444 4556677888888889999876
Q ss_pred CCCCCcceeEeec-------------C-------CCCCCceEECCCCC-EEEEEecCCCccccccccCCccceeeecCCc
Q 018242 231 KTSKAGTIEIVAQ-------------L-------PGFPDNIKRSPRGG-FWVGIHSRRKGISKLVLSFPWIGNVLIKLPI 289 (359)
Q Consensus 231 ~~~~~~~~~~~~~-------------~-------~~~p~~i~~d~~G~-lwv~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 289 (359)
+.+..=..+...+ + |+++.+|.++.|.+ ||++++.-+. +-.+-..++..-++..++.+
T Consensus 277 ~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~Gd-vrqYDISDP~~Pkl~gqv~l 355 (461)
T PF05694_consen 277 DDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGD-VRQYDISDPFNPKLVGQVFL 355 (461)
T ss_dssp -ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS-EEEEEETTTTE-EEEEE-SSTTS-EEEEEEE-
T ss_pred cCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCCCEEEEEcccCCc-EEEEecCCCCCCcEEeEEEE
Confidence 3221101111111 1 45677888888775 9999998664 12222223345555554433
No 229
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=96.05 E-value=0.61 Score=41.22 Aligned_cols=151 Identities=9% Similarity=0.082 Sum_probs=87.0
Q ss_pred CceEEEccCCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEEeC
Q 018242 36 PESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIADA 115 (359)
Q Consensus 36 p~~i~~~~~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~~~ 115 (359)
-.++++.|.|++...-..++.+..||+-+++.-. .......+.-+.+++ .|.-|+...
T Consensus 130 Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~---------------------v~~L~~~at~v~w~~-~Gd~F~v~~ 187 (362)
T KOG0294|consen 130 VTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAF---------------------VLNLKNKATLVSWSP-QGDHFVVSG 187 (362)
T ss_pred cceeEecCCCceEEEEcCCceeeeehhhcCccce---------------------eeccCCcceeeEEcC-CCCEEEEEe
Confidence 6689999999955555566889999987763211 122334455688998 555444434
Q ss_pred CCcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCCcEEE
Q 018242 116 YFGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQVTV 195 (359)
Q Consensus 116 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~ 195 (359)
.++|-.+..++..+-.. ... + ..+..+.+...+. +.++ ...+.|..+|.++.....
T Consensus 188 ~~~i~i~q~d~A~v~~~---i~~-~-~r~l~~~~l~~~~-L~vG------------------~d~~~i~~~D~ds~~~~~ 243 (362)
T KOG0294|consen 188 RNKIDIYQLDNASVFRE---IEN-P-KRILCATFLDGSE-LLVG------------------GDNEWISLKDTDSDTPLT 243 (362)
T ss_pred ccEEEEEecccHhHhhh---hhc-c-ccceeeeecCCce-EEEe------------------cCCceEEEeccCCCccce
Confidence 56777777665443111 110 1 1233345555554 6666 123457777776533221
Q ss_pred -EeCCCCCCceEE-Ec-cCCCEEEEEecCCCEEEEEEcCCC
Q 018242 196 -LLGNLSFPNGVA-LS-EDGNYILLAETTSCRILRYWLKTS 233 (359)
Q Consensus 196 -~~~~~~~p~gia-~~-~d~~~l~v~~~~~~~i~~~~~~~~ 233 (359)
+..+-...-+++ ++ |++ .++++.+.++.|.+||++-.
T Consensus 244 ~~~AH~~RVK~i~~~~~~~~-~~lvTaSSDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 244 EFLAHENRVKDIASYTNPEH-EYLVTASSDGFIKVWDIDME 283 (362)
T ss_pred eeecchhheeeeEEEecCCc-eEEEEeccCceEEEEEcccc
Confidence 222233344665 33 344 57888888899999998643
No 230
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=96.05 E-value=1.1 Score=40.38 Aligned_cols=179 Identities=16% Similarity=0.201 Sum_probs=82.8
Q ss_pred eEEEccCCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEEeCCC
Q 018242 38 SLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIADAYF 117 (359)
Q Consensus 38 ~i~~~~~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~~~~~ 117 (359)
.|.+.. .. .|+....+.|++-.-.+..|+.+..+ ....+.+.++.... ++..+++...+
T Consensus 66 ~I~f~~-~~-g~ivG~~g~ll~T~DgG~tW~~v~l~------------------~~lpgs~~~i~~l~-~~~~~l~~~~G 124 (302)
T PF14870_consen 66 SISFDG-NE-GWIVGEPGLLLHTTDGGKTWERVPLS------------------SKLPGSPFGITALG-DGSAELAGDRG 124 (302)
T ss_dssp EEEEET-TE-EEEEEETTEEEEESSTTSS-EE----------------------TT-SS-EEEEEEEE-TTEEEEEETT-
T ss_pred EEEecC-Cc-eEEEcCCceEEEecCCCCCcEEeecC------------------CCCCCCeeEEEEcC-CCcEEEEcCCC
Confidence 455543 33 45544446666654444556654211 12234566666555 66777776565
Q ss_pred cEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEE-EeCCCCcEEEE
Q 018242 118 GLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMK-YDPATKQVTVL 196 (359)
Q Consensus 118 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~-~d~~~~~~~~~ 196 (359)
.|++=.-.+...+.+... ....++++...++|+++.++. .|.+++ +++.....+..
T Consensus 125 ~iy~T~DgG~tW~~~~~~----~~gs~~~~~r~~dG~~vavs~-------------------~G~~~~s~~~G~~~w~~~ 181 (302)
T PF14870_consen 125 AIYRTTDGGKTWQAVVSE----TSGSINDITRSSDGRYVAVSS-------------------RGNFYSSWDPGQTTWQPH 181 (302)
T ss_dssp -EEEESSTTSSEEEEE-S--------EEEEEE-TTS-EEEEET-------------------TSSEEEEE-TT-SS-EEE
T ss_pred cEEEeCCCCCCeeEcccC----CcceeEeEEECCCCcEEEEEC-------------------cccEEEEecCCCccceEE
Confidence 677654444455554331 223567788889998444442 345553 45532233333
Q ss_pred eC-CCCCCceEEEccCCCEEEEEecCCCEEEEEEcCCCCCcceeEeec--CCCCC-----CceEECCCCCEEEEEecC
Q 018242 197 LG-NLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQ--LPGFP-----DNIKRSPRGGFWVGIHSR 266 (359)
Q Consensus 197 ~~-~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~--~~~~p-----~~i~~d~~G~lwv~~~~~ 266 (359)
.. .....+.+.|.+++. ||+.. ..+.|..=+... ..+.+.+ .+-.. -+++..+++.+|++...+
T Consensus 182 ~r~~~~riq~~gf~~~~~-lw~~~-~Gg~~~~s~~~~----~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~G 253 (302)
T PF14870_consen 182 NRNSSRRIQSMGFSPDGN-LWMLA-RGGQIQFSDDPD----DGETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGGSG 253 (302)
T ss_dssp E--SSS-EEEEEE-TTS--EEEEE-TTTEEEEEE-TT----EEEEE---B-TTSS--S-EEEEEESSSS-EEEEESTT
T ss_pred ccCccceehhceecCCCC-EEEEe-CCcEEEEccCCC----CccccccccCCcccCceeeEEEEecCCCCEEEEeCCc
Confidence 22 234457889999976 66655 555666554111 1233322 11111 236888889999977543
No 231
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=96.04 E-value=1.3 Score=43.70 Aligned_cols=141 Identities=17% Similarity=0.189 Sum_probs=78.1
Q ss_pred CEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEEeCCC-------cEEEEeCCCC
Q 018242 55 GRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIADAYF-------GLLKVGPEGG 127 (359)
Q Consensus 55 ~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~~~~~-------~i~~~~~~~~ 127 (359)
..+-.||+.+++|...+..+ ......++++. ++.||+....+ .+.+||+.++
T Consensus 301 ~~ve~yd~~~~~w~~~a~m~-------------------~~r~~~~~~~~--~~~lYv~GG~~~~~~~l~~ve~YD~~~~ 359 (571)
T KOG4441|consen 301 RSVECYDPKTNEWSSLAPMP-------------------SPRCRVGVAVL--NGKLYVVGGYDSGSDRLSSVERYDPRTN 359 (571)
T ss_pred ceeEEecCCcCcEeecCCCC-------------------cccccccEEEE--CCEEEEEccccCCCcccceEEEecCCCC
Confidence 46779999998787764221 11113456665 67899874332 3889999999
Q ss_pred eEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCCcEEEEeCCCCCCceEE
Q 018242 128 LATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQVTVLLGNLSFPNGVA 207 (359)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~p~gia 207 (359)
+++.+..-.. ...-.+++ .-+|. ||+.--.. + ......+-+|||.+.+...+..-...-.+.+
T Consensus 360 ~W~~~a~M~~---~R~~~~v~-~l~g~-iYavGG~d---g---------~~~l~svE~YDp~~~~W~~va~m~~~r~~~g 422 (571)
T KOG4441|consen 360 QWTPVAPMNT---KRSDFGVA-VLDGK-LYAVGGFD---G---------EKSLNSVECYDPVTNKWTPVAPMLTRRSGHG 422 (571)
T ss_pred ceeccCCccC---ccccceeE-EECCE-EEEEeccc---c---------ccccccEEEecCCCCcccccCCCCcceeeeE
Confidence 8876432111 01111222 23566 88872110 0 0122369999999887776542222222333
Q ss_pred EccCCCEEEEEecCC------CEEEEEEcCCC
Q 018242 208 LSEDGNYILLAETTS------CRILRYWLKTS 233 (359)
Q Consensus 208 ~~~d~~~l~v~~~~~------~~i~~~~~~~~ 233 (359)
...-++.+|+.+-.+ ..+.+||...+
T Consensus 423 v~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~ 454 (571)
T KOG4441|consen 423 VAVLGGKLYIIGGGDGSSNCLNSVECYDPETN 454 (571)
T ss_pred EEEECCEEEEEcCcCCCccccceEEEEcCCCC
Confidence 333334588887532 46777875543
No 232
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=95.99 E-value=1.7 Score=42.44 Aligned_cols=198 Identities=13% Similarity=0.108 Sum_probs=102.1
Q ss_pred eEEEccCCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccc-cCCcceEEEEe-cCCCeEEEEeC
Q 018242 38 SLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEH-ICGRPLGLCFN-KTNGDLYIADA 115 (359)
Q Consensus 38 ~i~~~~~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~p~gi~~~-~~~g~l~v~~~ 115 (359)
.++..+... +..+..++.+..|++..+++.... .+.. ...-+..+++. .+++.+.++..
T Consensus 19 ~v~~~~~~~-i~s~sRd~t~~vw~~~~~~~l~~~------------------~~~~~~g~i~~~i~y~e~~~~~l~~g~~ 79 (745)
T KOG0301|consen 19 AVAVTDGVC-IISGSRDGTVKVWAKKGKQYLETH------------------AFEGPKGFIANSICYAESDKGRLVVGGM 79 (745)
T ss_pred eeEecCCeE-EeecCCCCceeeeeccCcccccce------------------ecccCcceeeccceeccccCcceEeecc
Confidence 444444433 555666788899998776544210 1111 11112224444 44667888866
Q ss_pred CCcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCCcEEE
Q 018242 116 YFGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQVTV 195 (359)
Q Consensus 116 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~ 195 (359)
...|.++.+.+... +.... + ....+..+....++. .++- +++.++.+|-.. .-...
T Consensus 80 D~~i~v~~~~~~~P--~~~Lk-g-H~snVC~ls~~~~~~--~iSg-----------------SWD~TakvW~~~-~l~~~ 135 (745)
T KOG0301|consen 80 DTTIIVFKLSQAEP--LYTLK-G-HKSNVCSLSIGEDGT--LISG-----------------SWDSTAKVWRIG-ELVYS 135 (745)
T ss_pred cceEEEEecCCCCc--hhhhh-c-cccceeeeecCCcCc--eEec-----------------ccccceEEecch-hhhcc
Confidence 66677877765542 22111 1 123455666666765 3442 223333333322 11112
Q ss_pred EeCCCCCCceEEEccCCCEEEEEecCCCEEEEEEcCCCCCcceeEeecCCCCCCceEECCCCCEEEEEecCCCccccccc
Q 018242 196 LLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGGFWVGIHSRRKGISKLVL 275 (359)
Q Consensus 196 ~~~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lwv~~~~~~~~~~~~~~ 275 (359)
...+......++.-|++ .|++.+.+..|..|.- ++ ..+.|.......+++++=+++.+.-+.+++. +.
T Consensus 136 l~gH~asVWAv~~l~e~--~~vTgsaDKtIklWk~--~~--~l~tf~gHtD~VRgL~vl~~~~flScsNDg~------Ir 203 (745)
T KOG0301|consen 136 LQGHTASVWAVASLPEN--TYVTGSADKTIKLWKG--GT--LLKTFSGHTDCVRGLAVLDDSHFLSCSNDGS------IR 203 (745)
T ss_pred cCCcchheeeeeecCCC--cEEeccCcceeeeccC--Cc--hhhhhccchhheeeeEEecCCCeEeecCCce------EE
Confidence 33344445666666776 7999999999988863 11 1222322223356666655544555554433 55
Q ss_pred cCCccceeeecCCcc
Q 018242 276 SFPWIGNVLIKLPID 290 (359)
Q Consensus 276 ~~~~~g~~~~~~~~~ 290 (359)
.++.+|+.+.+...+
T Consensus 204 ~w~~~ge~l~~~~gh 218 (745)
T KOG0301|consen 204 LWDLDGEVLLEMHGH 218 (745)
T ss_pred EEeccCceeeeeecc
Confidence 566667766655443
No 233
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=95.94 E-value=1.1 Score=39.50 Aligned_cols=150 Identities=12% Similarity=0.085 Sum_probs=83.2
Q ss_pred eEEEccCCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEEeC-C
Q 018242 38 SLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIADA-Y 116 (359)
Q Consensus 38 ~i~~~~~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~~~-~ 116 (359)
++.+.+|+..++.+..+.+++.||..+++... .......-...+.-.. .|-..|++. .
T Consensus 95 ~l~~~~d~s~i~S~gtDk~v~~wD~~tG~~~r--------------------k~k~h~~~vNs~~p~r-rg~~lv~Sgsd 153 (338)
T KOG0265|consen 95 ELHGMRDGSHILSCGTDKTVRGWDAETGKRIR--------------------KHKGHTSFVNSLDPSR-RGPQLVCSGSD 153 (338)
T ss_pred eeeeccCCCEEEEecCCceEEEEecccceeee--------------------hhccccceeeecCccc-cCCeEEEecCC
Confidence 55667888888888888999999988873211 1111111122222222 333444432 2
Q ss_pred C-cEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCCcEEE
Q 018242 117 F-GLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQVTV 195 (359)
Q Consensus 117 ~-~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~ 195 (359)
. .+..+|......... .. ......++.+..++..+..+ .-.+.|-.||+..+....
T Consensus 154 D~t~kl~D~R~k~~~~t---~~--~kyqltAv~f~d~s~qv~sg------------------gIdn~ikvWd~r~~d~~~ 210 (338)
T KOG0265|consen 154 DGTLKLWDIRKKEAIKT---FE--NKYQLTAVGFKDTSDQVISG------------------GIDNDIKVWDLRKNDGLY 210 (338)
T ss_pred CceEEEEeecccchhhc---cc--cceeEEEEEecccccceeec------------------cccCceeeeccccCcceE
Confidence 2 366667664332111 11 01123455665555423332 223456678885555444
Q ss_pred Ee-CCCCCCceEEEccCCCEEEEEecCCCEEEEEEcCC
Q 018242 196 LL-GNLSFPNGVALSEDGNYILLAETTSCRILRYWLKT 232 (359)
Q Consensus 196 ~~-~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~ 232 (359)
+. +......++.++++|.. ..+++.++.+.+||..+
T Consensus 211 ~lsGh~DtIt~lsls~~gs~-llsnsMd~tvrvwd~rp 247 (338)
T KOG0265|consen 211 TLSGHADTITGLSLSRYGSF-LLSNSMDNTVRVWDVRP 247 (338)
T ss_pred EeecccCceeeEEeccCCCc-cccccccceEEEEEecc
Confidence 33 33445679999999984 66777888999999864
No 234
>PHA02713 hypothetical protein; Provisional
Probab=95.92 E-value=0.24 Score=48.79 Aligned_cols=149 Identities=10% Similarity=0.119 Sum_probs=77.7
Q ss_pred CCCeeEEecCC-----CEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEEeCC--
Q 018242 44 LGEGPYTGVSD-----GRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIADAY-- 116 (359)
Q Consensus 44 ~G~~l~~~~~~-----~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~~~~-- 116 (359)
+|+++.++..+ ..+.+||+.+++|+..+..+ .. ..-.+++.. +|.||+....
T Consensus 351 ~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp------------------~~-r~~~~~~~~--~g~IYviGG~~~ 409 (557)
T PHA02713 351 DDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMP------------------IA-LSSYGMCVL--DQYIYIIGGRTE 409 (557)
T ss_pred CCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCC------------------cc-cccccEEEE--CCEEEEEeCCCc
Confidence 56644444432 34788999998887654211 00 111233332 7888885321
Q ss_pred ----------------------CcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeee
Q 018242 117 ----------------------FGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVI 174 (359)
Q Consensus 117 ----------------------~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~ 174 (359)
+.+.+||+++++++.+..-.. +. ...++ +.-+|+ ||+.-....
T Consensus 410 ~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~--~r-~~~~~-~~~~~~-IYv~GG~~~---------- 474 (557)
T PHA02713 410 HIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWT--GT-IRPGV-VSHKDD-IYVVCDIKD---------- 474 (557)
T ss_pred ccccccccccccccccccccccceEEEECCCCCeEeecCCCCc--cc-ccCcE-EEECCE-EEEEeCCCC----------
Confidence 237889999998876543111 11 11222 334566 999721100
Q ss_pred eecCCCceEEEEeCCC-CcEEEEeCCCCCC---ceEEEccCCCEEEEEecCCC--EEEEEEcCC
Q 018242 175 LSGDKTGRLMKYDPAT-KQVTVLLGNLSFP---NGVALSEDGNYILLAETTSC--RILRYWLKT 232 (359)
Q Consensus 175 ~~~~~~g~v~~~d~~~-~~~~~~~~~~~~p---~gia~~~d~~~l~v~~~~~~--~i~~~~~~~ 232 (359)
.......+.+|||++ ++...+. .++.+ .+++.- ++ .+|+.+-.++ .+.+||+..
T Consensus 475 -~~~~~~~ve~Ydp~~~~~W~~~~-~m~~~r~~~~~~~~-~~-~iyv~Gg~~~~~~~e~yd~~~ 534 (557)
T PHA02713 475 -EKNVKTCIFRYNTNTYNGWELIT-TTESRLSALHTILH-DN-TIMMLHCYESYMLQDTFNVYT 534 (557)
T ss_pred -CCccceeEEEecCCCCCCeeEcc-ccCcccccceeEEE-CC-EEEEEeeecceeehhhcCccc
Confidence 001113578999997 5665442 23222 233332 44 4888765444 566666543
No 235
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=95.89 E-value=0.47 Score=45.84 Aligned_cols=156 Identities=19% Similarity=0.201 Sum_probs=96.0
Q ss_pred eEEEccCCCeeEEecCCCEEEEEEcCCcc-eEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEEeC-
Q 018242 38 SLAFDALGEGPYTGVSDGRIIKWHQDQRR-WLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIADA- 115 (359)
Q Consensus 38 ~i~~~~~G~~l~~~~~~~~i~~~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~~~- 115 (359)
+|+.-.+|+.+..++.+-.|-.|++.... +.. . .+.........+++-.++..++++..
T Consensus 78 DiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~------------s-------tir~H~DYVkcla~~ak~~~lvaSgGL 138 (735)
T KOG0308|consen 78 DIILCGNGKTLISASSDTTVKVWNAHKDNTFCM------------S-------TIRTHKDYVKCLAYIAKNNELVASGGL 138 (735)
T ss_pred hHHhhcCCCceEEecCCceEEEeecccCcchhH------------h-------hhhcccchheeeeecccCceeEEecCC
Confidence 34444567667777888889999886541 110 0 11122234567777454777777643
Q ss_pred CCcEEEEeCCCCeEEEEee-------cCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeC
Q 018242 116 YFGLLKVGPEGGLATAVAT-------QSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDP 188 (359)
Q Consensus 116 ~~~i~~~~~~~~~~~~~~~-------~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~ 188 (359)
.+.|..+|.+++..+.+.. .....+...++.++..+.|. ++++ ++..+.+..||+
T Consensus 139 D~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t-~ivs-----------------Ggtek~lr~wDp 200 (735)
T KOG0308|consen 139 DRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGT-IIVS-----------------GGTEKDLRLWDP 200 (735)
T ss_pred CccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcce-EEEe-----------------cCcccceEEecc
Confidence 3459999998774321111 01112344667788888886 7776 344556888999
Q ss_pred CCCcEE-EEeCCCCCCceEEEccCCCEEEEEecCCCEEEEEEcC
Q 018242 189 ATKQVT-VLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLK 231 (359)
Q Consensus 189 ~~~~~~-~~~~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~ 231 (359)
.+++-. .+.++......+.++.||.+ .++.+.++.|..|++.
T Consensus 201 rt~~kimkLrGHTdNVr~ll~~dDGt~-~ls~sSDgtIrlWdLg 243 (735)
T KOG0308|consen 201 RTCKKIMKLRGHTDNVRVLLVNDDGTR-LLSASSDGTIRLWDLG 243 (735)
T ss_pred ccccceeeeeccccceEEEEEcCCCCe-EeecCCCceEEeeecc
Confidence 876433 34455556778888889985 5555667899999874
No 236
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=95.88 E-value=0.05 Score=32.71 Aligned_cols=42 Identities=29% Similarity=0.385 Sum_probs=29.4
Q ss_pred CCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCCcEEEEeCCCCCCceEEEc
Q 018242 151 QSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQVTVLLGNLSFPNGVALS 209 (359)
Q Consensus 151 ~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~p~gia~~ 209 (359)
|+|++||+++.. .+.|..+|+.+++..........|.+++++
T Consensus 1 pd~~~lyv~~~~-----------------~~~v~~id~~~~~~~~~i~vg~~P~~i~~~ 42 (42)
T TIGR02276 1 PDGTKLYVTNSG-----------------SNTVSVIDTATNKVIATIPVGGYPFGVAVS 42 (42)
T ss_pred CCCCEEEEEeCC-----------------CCEEEEEECCCCeEEEEEECCCCCceEEeC
Confidence 467779999654 357888998877655444445678888774
No 237
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=95.86 E-value=0.6 Score=43.79 Aligned_cols=113 Identities=19% Similarity=0.187 Sum_probs=67.4
Q ss_pred eEEEEecCCCeEEEEeCCCc-EEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeec
Q 018242 99 LGLCFNKTNGDLYIADAYFG-LLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSG 177 (359)
Q Consensus 99 ~gi~~~~~~g~l~v~~~~~~-i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~ 177 (359)
+-+.+++....+......+| +..+|..+.....-.... ...-..+|++.|-...|+++.
T Consensus 168 Rll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~---HsAP~~gicfspsne~l~vsV----------------- 227 (673)
T KOG4378|consen 168 RLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEA---HSAPCRGICFSPSNEALLVSV----------------- 227 (673)
T ss_pred EEeecccccceeeEeeccCCeEEEEeccCCCcccchhhh---ccCCcCcceecCCccceEEEe-----------------
Confidence 45677775556665544455 667787654321111111 112246789998877466652
Q ss_pred CCCceEEEEeCCCCcEEEEeCCCCCC-ceEEEccCCCEEEEEecCCCEEEEEEcCCC
Q 018242 178 DKTGRLMKYDPATKQVTVLLGNLSFP-NGVALSEDGNYILLAETTSCRILRYWLKTS 233 (359)
Q Consensus 178 ~~~g~v~~~d~~~~~~~~~~~~~~~p-~gia~~~d~~~l~v~~~~~~~i~~~~~~~~ 233 (359)
+.+-+|+.||........... ...| ..++|.++|. .+++++..+.|+.||+...
T Consensus 228 G~Dkki~~yD~~s~~s~~~l~-y~~Plstvaf~~~G~-~L~aG~s~G~~i~YD~R~~ 282 (673)
T KOG4378|consen 228 GYDKKINIYDIRSQASTDRLT-YSHPLSTVAFSECGT-YLCAGNSKGELIAYDMRST 282 (673)
T ss_pred cccceEEEeecccccccceee-ecCCcceeeecCCce-EEEeecCCceEEEEecccC
Confidence 224478889876543322111 2233 5789999986 5667778899999998643
No 238
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=95.84 E-value=1.2 Score=40.16 Aligned_cols=168 Identities=18% Similarity=0.187 Sum_probs=88.9
Q ss_pred CceEEEccCCCeeEEecCCCEEEEEEcCCcc-eEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEEe
Q 018242 36 PESLAFDALGEGPYTGVSDGRIIKWHQDQRR-WLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIAD 114 (359)
Q Consensus 36 p~~i~~~~~G~~l~~~~~~~~i~~~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~~ 114 (359)
-.++++-|.|..+..+..+..|-.|+.+++. ..+|. ....=.+-+.+.. ||.|+.+-
T Consensus 196 vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~---------------------~h~ewvr~v~v~~-DGti~As~ 253 (406)
T KOG0295|consen 196 VSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFP---------------------GHSEWVRMVRVNQ-DGTIIASC 253 (406)
T ss_pred eeeEEEEecCCeeeecccccceeEEecccceeEEecc---------------------CchHhEEEEEecC-CeeEEEec
Confidence 3467788888867777888999999998872 22221 1111123444555 78887764
Q ss_pred CC-CcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCCcE
Q 018242 115 AY-FGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQV 193 (359)
Q Consensus 115 ~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~ 193 (359)
.. ..|..+-..+++-+....... ..+.-+++-|+-.+-=+.+.... .+.......++++..|-.+|..++.+
T Consensus 254 s~dqtl~vW~~~t~~~k~~lR~hE----h~vEci~wap~~~~~~i~~at~~---~~~~~~l~s~SrDktIk~wdv~tg~c 326 (406)
T KOG0295|consen 254 SNDQTLRVWVVATKQCKAELREHE----HPVECIAWAPESSYPSISEATGS---TNGGQVLGSGSRDKTIKIWDVSTGMC 326 (406)
T ss_pred CCCceEEEEEeccchhhhhhhccc----cceEEEEecccccCcchhhccCC---CCCccEEEeecccceEEEEeccCCeE
Confidence 33 345555554442111000000 00001111111000000000000 00000111235566788888888876
Q ss_pred EE-EeCCCCCCceEEEccCCCEEEEEecCCCEEEEEEcCCC
Q 018242 194 TV-LLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTS 233 (359)
Q Consensus 194 ~~-~~~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~ 233 (359)
.. +........+++|+|.|++ +++-.++.+|.+||++..
T Consensus 327 L~tL~ghdnwVr~~af~p~Gky-i~ScaDDktlrvwdl~~~ 366 (406)
T KOG0295|consen 327 LFTLVGHDNWVRGVAFSPGGKY-ILSCADDKTLRVWDLKNL 366 (406)
T ss_pred EEEEecccceeeeeEEcCCCeE-EEEEecCCcEEEEEeccc
Confidence 54 4456778899999999985 556678899999998653
No 239
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=95.81 E-value=1.3 Score=41.64 Aligned_cols=147 Identities=13% Similarity=0.081 Sum_probs=74.7
Q ss_pred EEEccCCCeeEEecCCCEEEEEEcCCcc-eEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEEeCCC
Q 018242 39 LAFDALGEGPYTGVSDGRIIKWHQDQRR-WLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIADAYF 117 (359)
Q Consensus 39 i~~~~~G~~l~~~~~~~~i~~~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~~~~~ 117 (359)
+...++|. +++-...|.+++-..++.. |+... ........++.+.+ ++.+|++...+
T Consensus 244 v~~~~dG~-~~~vg~~G~~~~s~d~G~~~W~~~~--------------------~~~~~~l~~v~~~~-dg~l~l~g~~G 301 (398)
T PLN00033 244 VNRSPDGD-YVAVSSRGNFYLTWEPGQPYWQPHN--------------------RASARRIQNMGWRA-DGGLWLLTRGG 301 (398)
T ss_pred EEEcCCCC-EEEEECCccEEEecCCCCcceEEec--------------------CCCccceeeeeEcC-CCCEEEEeCCc
Confidence 45667888 4444444566655444433 34332 11112345677777 89999987666
Q ss_pred cEEEEeCCCCeEE--EEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCCcEEE
Q 018242 118 GLLKVGPEGGLAT--AVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQVTV 195 (359)
Q Consensus 118 ~i~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~ 195 (359)
++++-+-.+...+ .+...........+.++.+.+++. +|++ ...|.+++-...+...+.
T Consensus 302 ~l~~S~d~G~~~~~~~f~~~~~~~~~~~l~~v~~~~d~~-~~a~------------------G~~G~v~~s~D~G~tW~~ 362 (398)
T PLN00033 302 GLYVSKGTGLTEEDFDFEEADIKSRGFGILDVGYRSKKE-AWAA------------------GGSGILLRSTDGGKSWKR 362 (398)
T ss_pred eEEEecCCCCcccccceeecccCCCCcceEEEEEcCCCc-EEEE------------------ECCCcEEEeCCCCcceeE
Confidence 6665443332111 111111111112466788888888 9988 223445554444334344
Q ss_pred Ee--CCCC-CCceEEEccCCCEEEEEecCCCEEEEE
Q 018242 196 LL--GNLS-FPNGVALSEDGNYILLAETTSCRILRY 228 (359)
Q Consensus 196 ~~--~~~~-~p~gia~~~d~~~l~v~~~~~~~i~~~ 228 (359)
.. .... .-..+.|..+++ .|+.. .++.|.+|
T Consensus 363 ~~~~~~~~~~ly~v~f~~~~~-g~~~G-~~G~il~~ 396 (398)
T PLN00033 363 DKGADNIAANLYSVKFFDDKK-GFVLG-NDGVLLRY 396 (398)
T ss_pred ccccCCCCcceeEEEEcCCCc-eEEEe-CCcEEEEe
Confidence 32 1111 124666655554 66665 44566665
No 240
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=95.71 E-value=0.48 Score=43.16 Aligned_cols=101 Identities=13% Similarity=0.096 Sum_probs=60.4
Q ss_pred ccCCcceEEEEecCCCeEEEEeCCCc-EEEEeCC--------C-----Ce-EEEEeecCCCccccccceEEEeCCCCEEE
Q 018242 93 HICGRPLGLCFNKTNGDLYIADAYFG-LLKVGPE--------G-----GL-ATAVATQSEGIPFRFCNSLDIDQSTGIIY 157 (359)
Q Consensus 93 ~~~~~p~gi~~~~~~g~l~v~~~~~~-i~~~~~~--------~-----~~-~~~~~~~~~~~~~~~~~~l~~d~~g~~l~ 157 (359)
......+.+.|++ +|++..+....| +..+... + .+ .... ....+ ....+.++++.++++ +.
T Consensus 63 ~H~~aVN~vRf~p-~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~-k~lr~-h~~diydL~Ws~d~~-~l 138 (434)
T KOG1009|consen 63 RHTRAVNVVRFSP-DGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVK-KVLRG-HRDDIYDLAWSPDSN-FL 138 (434)
T ss_pred CCcceeEEEEEcC-CcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEE-EEecc-cccchhhhhccCCCc-ee
Confidence 3345577899999 888877644433 4444332 2 10 1000 11111 123577899999998 44
Q ss_pred EEeCCCccccccceeeeeecCCCceEEEEeCCCCcEEEEe-CCCCCCceEEEccCCCE
Q 018242 158 FTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQVTVLL-GNLSFPNGVALSEDGNY 214 (359)
Q Consensus 158 v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~-~~~~~p~gia~~~d~~~ 214 (359)
++- .....++.+|...|.+.... .+-..++|.|++|-+++
T Consensus 139 ~s~-----------------s~dns~~l~Dv~~G~l~~~~~dh~~yvqgvawDpl~qy 179 (434)
T KOG1009|consen 139 VSG-----------------SVDNSVRLWDVHAGQLLAILDDHEHYVQGVAWDPLNQY 179 (434)
T ss_pred eee-----------------eccceEEEEEeccceeEeeccccccccceeecchhhhh
Confidence 442 23456888888877776543 44567899999987753
No 241
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=95.60 E-value=0.83 Score=44.55 Aligned_cols=107 Identities=7% Similarity=0.099 Sum_probs=63.4
Q ss_pred cceEEEEecCCCeEEEEeCCCc-EEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeee
Q 018242 97 RPLGLCFNKTNGDLYIADAYFG-LLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVIL 175 (359)
Q Consensus 97 ~p~gi~~~~~~g~l~v~~~~~~-i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~ 175 (359)
..+.++.-+ ++ .|++...+. |..+.-+ ...+.+. + ....+.++++-+++. +.-+
T Consensus 142 sVWAv~~l~-e~-~~vTgsaDKtIklWk~~-~~l~tf~----g-HtD~VRgL~vl~~~~-flSc---------------- 196 (745)
T KOG0301|consen 142 SVWAVASLP-EN-TYVTGSADKTIKLWKGG-TLLKTFS----G-HTDCVRGLAVLDDSH-FLSC---------------- 196 (745)
T ss_pred heeeeeecC-CC-cEEeccCcceeeeccCC-chhhhhc----c-chhheeeeEEecCCC-eEee----------------
Confidence 345666666 55 555544443 4444432 2222221 1 224677889888877 3222
Q ss_pred ecCCCceEEEEeCCCCcEEEEeCCCCCCceEEEccCCCEEEEEecCCCEEEEEEcC
Q 018242 176 SGDKTGRLMKYDPATKQVTVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLK 231 (359)
Q Consensus 176 ~~~~~g~v~~~d~~~~~~~~~~~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~ 231 (359)
+..|.|..++.++..+.....+-.....+....+++ ++++..++.++..|+.+
T Consensus 197 --sNDg~Ir~w~~~ge~l~~~~ghtn~vYsis~~~~~~-~Ivs~gEDrtlriW~~~ 249 (745)
T KOG0301|consen 197 --SNDGSIRLWDLDGEVLLEMHGHTNFVYSISMALSDG-LIVSTGEDRTLRIWKKD 249 (745)
T ss_pred --cCCceEEEEeccCceeeeeeccceEEEEEEecCCCC-eEEEecCCceEEEeecC
Confidence 346778889886555555555555666777555544 78888888889888743
No 242
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.57 E-value=2.5 Score=41.05 Aligned_cols=153 Identities=11% Similarity=0.128 Sum_probs=90.2
Q ss_pred ceEEEccCCCeeEEecCCCEEEEEEcCCcc-eEEEeecCCCCCCCCCCcccccccccccCCcc-eEEEEecCCCeEEEEe
Q 018242 37 ESLAFDALGEGPYTGVSDGRIIKWHQDQRR-WLHFARTSPNRDGCEGAYEYDHAAKEHICGRP-LGLCFNKTNGDLYIAD 114 (359)
Q Consensus 37 ~~i~~~~~G~~l~~~~~~~~i~~~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~gi~~~~~~g~l~v~~ 114 (359)
.++.+.|.---+.++..+|.+..||-++.. ++.|. .. ..| +...|-+..+.+.++.
T Consensus 17 KsVd~HPtePw~la~LynG~V~IWnyetqtmVksfe-------------------V~---~~PvRa~kfiaRknWiv~Gs 74 (794)
T KOG0276|consen 17 KSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFE-------------------VS---EVPVRAAKFIARKNWIVTGS 74 (794)
T ss_pred eeeecCCCCceEEEeeecCeeEEEecccceeeeeee-------------------ec---ccchhhheeeeccceEEEec
Confidence 477888887755578889999999988753 22221 11 122 2333444244454554
Q ss_pred CCCcEEEEeCCCCeE-EEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCCcE
Q 018242 115 AYFGLLKVGPEGGLA-TAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQV 193 (359)
Q Consensus 115 ~~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~ 193 (359)
....|..|+..+.+. +.+.. ....+..|+++|.-= ..++.+. + ..-+++-|+..=...
T Consensus 75 DD~~IrVfnynt~ekV~~FeA-----H~DyIR~iavHPt~P-~vLtsSD-D--------------m~iKlW~we~~wa~~ 133 (794)
T KOG0276|consen 75 DDMQIRVFNYNTGEKVKTFEA-----HSDYIRSIAVHPTLP-YVLTSSD-D--------------MTIKLWDWENEWACE 133 (794)
T ss_pred CCceEEEEecccceeeEEeec-----cccceeeeeecCCCC-eEEecCC-c--------------cEEEEeeccCceeee
Confidence 344688888877653 22221 123677899999876 4444222 1 122444444321111
Q ss_pred EEEeCCCCCCceEEEccCCCEEEEEecCCCEEEEEEcCC
Q 018242 194 TVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKT 232 (359)
Q Consensus 194 ~~~~~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~ 232 (359)
+.+.++-...-.++|.|....-+++.+-+.+|.+|.+-.
T Consensus 134 qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs 172 (794)
T KOG0276|consen 134 QTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGS 172 (794)
T ss_pred eEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCC
Confidence 223334445567899986666799999999999998754
No 243
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=95.55 E-value=0.53 Score=46.86 Aligned_cols=158 Identities=15% Similarity=0.090 Sum_probs=93.3
Q ss_pred CceEEEccCCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEEeC
Q 018242 36 PESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIADA 115 (359)
Q Consensus 36 p~~i~~~~~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~~~ 115 (359)
-.+.+++|.++.+.++..+|+|..|.-...+-..+. ...+.+ ......+++|+.++..||-+..
T Consensus 208 ~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t--------------~t~lHW--H~~~V~~L~fS~~G~~LlSGG~ 271 (792)
T KOG1963|consen 208 ITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSET--------------CTLLHW--HHDEVNSLSFSSDGAYLLSGGR 271 (792)
T ss_pred ceeEEeccccceEEEeccCCcEEEEecccccccccc--------------ceEEEe--cccccceeEEecCCceEeeccc
Confidence 457889999997778888899999975441100000 000111 1234678999996666766654
Q ss_pred CCcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCCcEEE
Q 018242 116 YFGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQVTV 195 (359)
Q Consensus 116 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~ 195 (359)
..-+.++..++++ +.+.++.. ..+-+++++||+. +|..-.. +..|..+...+.+.+.
T Consensus 272 E~VLv~Wq~~T~~-kqfLPRLg----s~I~~i~vS~ds~-~~sl~~~-----------------DNqI~li~~~dl~~k~ 328 (792)
T KOG1963|consen 272 EGVLVLWQLETGK-KQFLPRLG----SPILHIVVSPDSD-LYSLVLE-----------------DNQIHLIKASDLEIKS 328 (792)
T ss_pred ceEEEEEeecCCC-cccccccC----CeeEEEEEcCCCC-eEEEEec-----------------CceEEEEeccchhhhh
Confidence 4447788888877 44444433 2456789999999 7665332 2234444333222221
Q ss_pred EeCCC------------CCCceEEEccCCCEEEEEecCCCEEEEEEcCCC
Q 018242 196 LLGNL------------SFPNGVALSEDGNYILLAETTSCRILRYWLKTS 233 (359)
Q Consensus 196 ~~~~~------------~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~ 233 (359)
...+. ..+.+++++|--+ ..+.+...++|.-||+..+
T Consensus 329 tIsgi~~~~~~~k~~~~~l~t~~~idpr~~-~~vln~~~g~vQ~ydl~td 377 (792)
T KOG1963|consen 329 TISGIKPPTPSTKTRPQSLTTGVSIDPRTN-SLVLNGHPGHVQFYDLYTD 377 (792)
T ss_pred hccCccCCCccccccccccceeEEEcCCCC-ceeecCCCceEEEEecccc
Confidence 11111 2346788888444 4555567788999998654
No 244
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=95.50 E-value=2.7 Score=41.12 Aligned_cols=169 Identities=14% Similarity=0.096 Sum_probs=87.4
Q ss_pred CCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEEeC------CC
Q 018242 44 LGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIADA------YF 117 (359)
Q Consensus 44 ~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~~~------~~ 117 (359)
+++ +|+++.++.|+.+|..+++...-...... . ........| .+. ++.++++.. .+
T Consensus 120 ~~~-v~v~t~dg~l~ALDa~TGk~~W~~~~~~~-------~-----~~~~~tssP---~v~--~g~Vivg~~~~~~~~~G 181 (527)
T TIGR03075 120 DGK-VFFGTLDARLVALDAKTGKVVWSKKNGDY-------K-----AGYTITAAP---LVV--KGKVITGISGGEFGVRG 181 (527)
T ss_pred CCE-EEEEcCCCEEEEEECCCCCEEeecccccc-------c-----ccccccCCc---EEE--CCEEEEeecccccCCCc
Confidence 355 88888889999999998865432111000 0 000011112 122 667888753 23
Q ss_pred cEEEEeCCCCeEEEEeecCCCc--------------c-------------cccc-ceEEEeCCCCEEEEEeCCCc-cccc
Q 018242 118 GLLKVGPEGGLATAVATQSEGI--------------P-------------FRFC-NSLDIDQSTGIIYFTDSSSQ-FQRR 168 (359)
Q Consensus 118 ~i~~~~~~~~~~~~~~~~~~~~--------------~-------------~~~~-~~l~~d~~g~~l~v~d~~~~-~~~~ 168 (359)
.|+.+|.++|+..-.....+.. + ...+ ..+++|++-+.+|+...... |...
T Consensus 182 ~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~ 261 (527)
T TIGR03075 182 YVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSH 261 (527)
T ss_pred EEEEEECCCCceeEeccCcCCCcccccccccccccccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCC
Confidence 4888899888754322111100 0 0011 23588887666888853210 1110
Q ss_pred cceeeeeecCCCceEEEEeCCCCcEEEEeCC-------C---CCCceEEEccCCC--EEEEEecCCCEEEEEEcCCC
Q 018242 169 NHISVILSGDKTGRLMKYDPATKQVTVLLGN-------L---SFPNGVALSEDGN--YILLAETTSCRILRYWLKTS 233 (359)
Q Consensus 169 ~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~-------~---~~p~gia~~~d~~--~l~v~~~~~~~i~~~~~~~~ 233 (359)
... ...-....|+.+|++||+++...+. + ..|.-+.+..+|+ -+++....++.++++|....
T Consensus 262 ~r~---gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG 335 (527)
T TIGR03075 262 LRP---GDNLYTSSIVARDPDTGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNG 335 (527)
T ss_pred CCC---CCCccceeEEEEccccCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCC
Confidence 000 0011234799999999998865322 1 1222222334555 35666667777777776543
No 245
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.43 E-value=0.43 Score=43.57 Aligned_cols=157 Identities=15% Similarity=0.175 Sum_probs=80.8
Q ss_pred CCceEEEccCCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCC---eEE
Q 018242 35 GPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNG---DLY 111 (359)
Q Consensus 35 ~p~~i~~~~~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g---~l~ 111 (359)
.-+++.|++||+ +.++........|+.+++....-. .|.+ ..-....+.|.. ++ .|+
T Consensus 188 eV~DL~FS~dgk-~lasig~d~~~VW~~~~g~~~a~~----------t~~~--------k~~~~~~cRF~~-d~~~~~l~ 247 (398)
T KOG0771|consen 188 EVKDLDFSPDGK-FLASIGADSARVWSVNTGAALARK----------TPFS--------KDEMFSSCRFSV-DNAQETLR 247 (398)
T ss_pred ccccceeCCCCc-EEEEecCCceEEEEeccCchhhhc----------CCcc--------cchhhhhceecc-cCCCceEE
Confidence 445999999998 444443347788888776211000 0000 000112344554 33 677
Q ss_pred EEeCC---CcEEEEeCC--CCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEE
Q 018242 112 IADAY---FGLLKVGPE--GGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKY 186 (359)
Q Consensus 112 v~~~~---~~i~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~ 186 (359)
+++.. .+|..++.. .+. ..+.....-..+..+..++++++|+++-++ +..|.|..+
T Consensus 248 laa~~~~~~~v~~~~~~~w~~~-~~l~~~~~~~~~~siSsl~VS~dGkf~AlG------------------T~dGsVai~ 308 (398)
T KOG0771|consen 248 LAASQFPGGGVRLCDISLWSGS-NFLRLRKKIKRFKSISSLAVSDDGKFLALG------------------TMDGSVAIY 308 (398)
T ss_pred EEEecCCCCceeEEEeeeeccc-cccchhhhhhccCcceeEEEcCCCcEEEEe------------------ccCCcEEEE
Confidence 76543 234443332 121 011110011134477889999999944444 446778888
Q ss_pred eCCCCcEEEEe--CCCCCCceEEEccCCCEEEEEecCCCEEEEEEcC
Q 018242 187 DPATKQVTVLL--GNLSFPNGVALSEDGNYILLAETTSCRILRYWLK 231 (359)
Q Consensus 187 d~~~~~~~~~~--~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~ 231 (359)
+..+-+...+. .+.....+++|+||.+.+-- -+.+++..+..+.
T Consensus 309 ~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~s-vSs~~~~~v~~l~ 354 (398)
T KOG0771|consen 309 DAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLAS-VSSDNEAAVTKLA 354 (398)
T ss_pred EeceeeeeEeehhhheeeeeeEEEcCCcCcccc-cccCCceeEEEEe
Confidence 87643332222 22345789999999874333 3334455554443
No 246
>PHA03098 kelch-like protein; Provisional
Probab=95.41 E-value=2.4 Score=41.65 Aligned_cols=139 Identities=14% Similarity=0.153 Sum_probs=71.4
Q ss_pred EEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEEeCC------CcEEEEeCCCCeE
Q 018242 56 RIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIADAY------FGLLKVGPEGGLA 129 (359)
Q Consensus 56 ~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~~~~------~~i~~~~~~~~~~ 129 (359)
.++.||+.+++|...+..+ . ...-++++.. ++.||+.... +.+.+||+.++++
T Consensus 312 ~v~~yd~~~~~W~~~~~~~------------------~-~R~~~~~~~~--~~~lyv~GG~~~~~~~~~v~~yd~~~~~W 370 (534)
T PHA03098 312 SVVSYDTKTKSWNKVPELI------------------Y-PRKNPGVTVF--NNRIYVIGGIYNSISLNTVESWKPGESKW 370 (534)
T ss_pred cEEEEeCCCCeeeECCCCC------------------c-ccccceEEEE--CCEEEEEeCCCCCEecceEEEEcCCCCce
Confidence 6889999998887653111 0 0111233333 6788886432 2378899998887
Q ss_pred EEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCCcEEEEeCCCCCCc-e-EE
Q 018242 130 TAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQVTVLLGNLSFPN-G-VA 207 (359)
Q Consensus 130 ~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~p~-g-ia 207 (359)
+....... +. .-.. +..-+|+ +|+.-.... .......+.+||+.+++...... .+.+. + -+
T Consensus 371 ~~~~~lp~--~r-~~~~-~~~~~~~-iYv~GG~~~-----------~~~~~~~v~~yd~~t~~W~~~~~-~p~~r~~~~~ 433 (534)
T PHA03098 371 REEPPLIF--PR-YNPC-VVNVNNL-IYVIGGISK-----------NDELLKTVECFSLNTNKWSKGSP-LPISHYGGCA 433 (534)
T ss_pred eeCCCcCc--CC-ccce-EEEECCE-EEEECCcCC-----------CCcccceEEEEeCCCCeeeecCC-CCccccCceE
Confidence 65432111 11 1112 2334566 998721100 00112468999998877655432 22121 1 12
Q ss_pred EccCCCEEEEEecCC--------CEEEEEEcCCC
Q 018242 208 LSEDGNYILLAETTS--------CRILRYWLKTS 233 (359)
Q Consensus 208 ~~~d~~~l~v~~~~~--------~~i~~~~~~~~ 233 (359)
...++ .+|+.+-.+ ..+++||...+
T Consensus 434 ~~~~~-~iyv~GG~~~~~~~~~~~~v~~yd~~~~ 466 (534)
T PHA03098 434 IYHDG-KIYVIGGISYIDNIKVYNIVESYNPVTN 466 (534)
T ss_pred EEECC-EEEEECCccCCCCCcccceEEEecCCCC
Confidence 22344 477775321 23788886543
No 247
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=95.41 E-value=0.3 Score=44.84 Aligned_cols=163 Identities=13% Similarity=0.079 Sum_probs=93.7
Q ss_pred CceEEEccC--CCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEE
Q 018242 36 PESLAFDAL--GEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIA 113 (359)
Q Consensus 36 p~~i~~~~~--G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~ 113 (359)
-.++++.+. |. +..+..++.|..||.+...... .+..|-. .+........-+++.+....+|.+
T Consensus 180 g~glsWn~~~~g~-Lls~~~d~~i~lwdi~~~~~~~---------~~~~p~~----~~~~h~~~VeDV~~h~~h~~lF~s 245 (422)
T KOG0264|consen 180 GYGLSWNRQQEGT-LLSGSDDHTICLWDINAESKED---------KVVDPKT----IFSGHEDVVEDVAWHPLHEDLFGS 245 (422)
T ss_pred cccccccccccee-EeeccCCCcEEEEeccccccCC---------ccccceE----EeecCCcceehhhccccchhhhee
Confidence 345666653 55 7777888999999987642110 0011100 111122223345666656777766
Q ss_pred eCCC-cEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCCc
Q 018242 114 DAYF-GLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQ 192 (359)
Q Consensus 114 ~~~~-~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~ 192 (359)
...+ .+...|..+++-+. .. ........++.+++.|-+..+..+ ++..+.|..+|+..-.
T Consensus 246 v~dd~~L~iwD~R~~~~~~-~~-~~~ah~~~vn~~~fnp~~~~ilAT-----------------~S~D~tV~LwDlRnL~ 306 (422)
T KOG0264|consen 246 VGDDGKLMIWDTRSNTSKP-SH-SVKAHSAEVNCVAFNPFNEFILAT-----------------GSADKTVALWDLRNLN 306 (422)
T ss_pred ecCCCeEEEEEcCCCCCCC-cc-cccccCCceeEEEeCCCCCceEEe-----------------ccCCCcEEEeechhcc
Confidence 4433 47777877431111 00 011112356788999887734444 2335689999986422
Q ss_pred EE--EEeCCCCCCceEEEccCCCEEEEEecCCCEEEEEEcC
Q 018242 193 VT--VLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLK 231 (359)
Q Consensus 193 ~~--~~~~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~ 231 (359)
.. .+...-.....+.++|+...++.+...++++.+||+.
T Consensus 307 ~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls 347 (422)
T KOG0264|consen 307 KPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLS 347 (422)
T ss_pred cCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEecc
Confidence 21 1222233456788999988899998899999999985
No 248
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=95.41 E-value=0.72 Score=43.93 Aligned_cols=155 Identities=17% Similarity=0.077 Sum_probs=93.5
Q ss_pred ceEEEccCCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEEeCC
Q 018242 37 ESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIADAY 116 (359)
Q Consensus 37 ~~i~~~~~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~~~~ 116 (359)
-++.+.+||+.+..+..++.+..||..+.+... .+.........++++|-...|.+...+
T Consensus 305 CgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~--------------------~~~~H~aAVKA~awcP~q~~lLAsGGG 364 (484)
T KOG0305|consen 305 CGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKF--------------------TFTEHTAAVKALAWCPWQSGLLATGGG 364 (484)
T ss_pred eeeEECCCCCeeccCCCccceEeccCCCccccE--------------------EEeccceeeeEeeeCCCccCceEEcCC
Confidence 378899999977778888999999985432111 223334556678888866666654322
Q ss_pred --C-cEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCCcE
Q 018242 117 --F-GLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQV 193 (359)
Q Consensus 117 --~-~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~ 193 (359)
+ .|..+|..+++...... ....+..|++.+..+-+..+ .+.. ...-.||+|..- ...
T Consensus 365 s~D~~i~fwn~~~g~~i~~vd-----tgsQVcsL~Wsk~~kEi~st-hG~s-------------~n~i~lw~~ps~-~~~ 424 (484)
T KOG0305|consen 365 SADRCIKFWNTNTGARIDSVD-----TGSQVCSLIWSKKYKELLST-HGYS-------------ENQITLWKYPSM-KLV 424 (484)
T ss_pred CcccEEEEEEcCCCcEecccc-----cCCceeeEEEcCCCCEEEEe-cCCC-------------CCcEEEEecccc-cee
Confidence 2 37777888776432221 12467789999988734444 3211 112246655432 222
Q ss_pred EEEeCCCCCCceEEEccCCCEEEEEecCCCEEEEEEcCC
Q 018242 194 TVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKT 232 (359)
Q Consensus 194 ~~~~~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~ 232 (359)
..+..+....-.++++|||..+ ++...+.+|..|++-+
T Consensus 425 ~~l~gH~~RVl~la~SPdg~~i-~t~a~DETlrfw~~f~ 462 (484)
T KOG0305|consen 425 AELLGHTSRVLYLALSPDGETI-VTGAADETLRFWNLFD 462 (484)
T ss_pred eeecCCcceeEEEEECCCCCEE-EEecccCcEEeccccC
Confidence 2333444445678999999864 4455667888887643
No 249
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=95.29 E-value=0.48 Score=45.20 Aligned_cols=162 Identities=12% Similarity=0.146 Sum_probs=89.2
Q ss_pred ceEEEccCCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEEeCC
Q 018242 37 ESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIADAY 116 (359)
Q Consensus 37 ~~i~~~~~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~~~~ 116 (359)
..+.+.+-..++.+++.+|.+-.||+.+.+.........+.. ..|. ......+..+.|+.++=++-|++..
T Consensus 179 N~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~--s~pg-------~~~~~svTal~F~d~gL~~aVGts~ 249 (703)
T KOG2321|consen 179 NVVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVN--SHPG-------GDAAPSVTALKFRDDGLHVAVGTST 249 (703)
T ss_pred eeeeecCccceEEecccCceEEEecchhhhhheeeecccccC--CCcc-------ccccCcceEEEecCCceeEEeeccC
Confidence 355566666667788888999999998754322211111100 0011 1112236778888744456667766
Q ss_pred CcEEEEeCCCCeEEEEeecCCCccccccceEEEeC--CCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCCcEE
Q 018242 117 FGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQ--STGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQVT 194 (359)
Q Consensus 117 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~--~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~ 194 (359)
+.++.||+.+.+.-.+.......++. .+.+-+ +++.++-.|. ..+-.||..+|+..
T Consensus 250 G~v~iyDLRa~~pl~~kdh~~e~pi~---~l~~~~~~~q~~v~S~Dk-------------------~~~kiWd~~~Gk~~ 307 (703)
T KOG2321|consen 250 GSVLIYDLRASKPLLVKDHGYELPIK---KLDWQDTDQQNKVVSMDK-------------------RILKIWDECTGKPM 307 (703)
T ss_pred CcEEEEEcccCCceeecccCCcccee---eecccccCCCceEEecch-------------------HHhhhcccccCCce
Confidence 67999999876643333322222322 233322 2331433321 12344777777665
Q ss_pred EEeCCCCCCceEEEccCCCEEEEEecCCCEEEEEEc
Q 018242 195 VLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWL 230 (359)
Q Consensus 195 ~~~~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~ 230 (359)
.........+.+|+-|++. ++++...+..+..|-+
T Consensus 308 asiEpt~~lND~C~~p~sG-m~f~Ane~~~m~~yyi 342 (703)
T KOG2321|consen 308 ASIEPTSDLNDFCFVPGSG-MFFTANESSKMHTYYI 342 (703)
T ss_pred eeccccCCcCceeeecCCc-eEEEecCCCcceeEEc
Confidence 5544445568899999887 5555556666666654
No 250
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=95.27 E-value=1.6 Score=39.59 Aligned_cols=120 Identities=15% Similarity=0.141 Sum_probs=76.6
Q ss_pred CcceEEEEecC-CCeEEEEeCCCcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeee
Q 018242 96 GRPLGLCFNKT-NGDLYIADAYFGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVI 174 (359)
Q Consensus 96 ~~p~gi~~~~~-~g~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~ 174 (359)
..-+||.++|. .|.|.-++-.++|+...+.++.+..=..++.+ ....+.+|.++|..+.++.+
T Consensus 212 ~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~g-H~~SVEDLqWSptE~~vfaS--------------- 275 (440)
T KOG0302|consen 212 GEGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTG-HTKSVEDLQWSPTEDGVFAS--------------- 275 (440)
T ss_pred ccceeeecccccccccccCccccceEeeeeccCceeecCccccc-cccchhhhccCCccCceEEe---------------
Confidence 44567887762 46676666566788888888776531111112 23467889999876646666
Q ss_pred eecCCCceEEEEeCCCC---cEEEEeCCCCCCceEEEccCCCEEEEEecCCCEEEEEEcCCCC
Q 018242 175 LSGDKTGRLMKYDPATK---QVTVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSK 234 (359)
Q Consensus 175 ~~~~~~g~v~~~d~~~~---~~~~~~~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~ 234 (359)
.+..+.|..+|...+ ..........-.|.|.++.+-. ++.++.+++.+..||+..-+
T Consensus 276 --cS~DgsIrIWDiRs~~~~~~~~~kAh~sDVNVISWnr~~~-lLasG~DdGt~~iwDLR~~~ 335 (440)
T KOG0302|consen 276 --CSCDGSIRIWDIRSGPKKAAVSTKAHNSDVNVISWNRREP-LLASGGDDGTLSIWDLRQFK 335 (440)
T ss_pred --eecCceEEEEEecCCCccceeEeeccCCceeeEEccCCcc-eeeecCCCceEEEEEhhhcc
Confidence 244567777887654 1212222233467888876655 88888899999999986443
No 251
>PHA02790 Kelch-like protein; Provisional
Probab=95.24 E-value=1.3 Score=42.76 Aligned_cols=140 Identities=12% Similarity=0.097 Sum_probs=73.9
Q ss_pred cCCCeeEEecC--CCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEEeCC----
Q 018242 43 ALGEGPYTGVS--DGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIADAY---- 116 (359)
Q Consensus 43 ~~G~~l~~~~~--~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~~~~---- 116 (359)
-+|.++.++.. ...+.+||+.+++|...+.. ... ..-.+.+.. +|+||+....
T Consensus 317 ~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l------------------~~~-r~~~~~~~~--~g~IYviGG~~~~~ 375 (480)
T PHA02790 317 ANNKLYVVGGLPNPTSVERWFHGDAAWVNMPSL------------------LKP-RCNPAVASI--NNVIYVIGGHSETD 375 (480)
T ss_pred ECCEEEEECCcCCCCceEEEECCCCeEEECCCC------------------CCC-CcccEEEEE--CCEEEEecCcCCCC
Confidence 35663334432 14577888888877754311 100 111223332 7899986332
Q ss_pred CcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCCcEEEE
Q 018242 117 FGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQVTVL 196 (359)
Q Consensus 117 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~ 196 (359)
..+.+||+++++++...... .+... ..++.-+|+ ||+. .|.+.+||+++++...+
T Consensus 376 ~~ve~ydp~~~~W~~~~~m~--~~r~~--~~~~~~~~~-IYv~--------------------GG~~e~ydp~~~~W~~~ 430 (480)
T PHA02790 376 TTTEYLLPNHDQWQFGPSTY--YPHYK--SCALVFGRR-LFLV--------------------GRNAEFYCESSNTWTLI 430 (480)
T ss_pred ccEEEEeCCCCEEEeCCCCC--Ccccc--ceEEEECCE-EEEE--------------------CCceEEecCCCCcEeEc
Confidence 23678999998887643211 11111 223334666 9998 23467899988877654
Q ss_pred eCCCCCC---ceEEEccCCCEEEEEecCC-----CEEEEEEcC
Q 018242 197 LGNLSFP---NGVALSEDGNYILLAETTS-----CRILRYWLK 231 (359)
Q Consensus 197 ~~~~~~p---~gia~~~d~~~l~v~~~~~-----~~i~~~~~~ 231 (359)
. ....| .+++.- +++ +|+.+-.+ ..+.+||..
T Consensus 431 ~-~m~~~r~~~~~~v~-~~~-IYviGG~~~~~~~~~ve~Yd~~ 470 (480)
T PHA02790 431 D-DPIYPRDNPELIIV-DNK-LLLIGGFYRGSYIDTIEVYNNR 470 (480)
T ss_pred C-CCCCCccccEEEEE-CCE-EEEECCcCCCcccceEEEEECC
Confidence 3 22222 234332 444 78775422 345555543
No 252
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.23 E-value=4 Score=41.40 Aligned_cols=68 Identities=7% Similarity=0.029 Sum_probs=38.9
Q ss_pred CCCCceEEEccCCCEEEEEecCCCEEEEEEcCCCCCcceeEeecCCCCCCceEECCCCCEEEEEecCCC
Q 018242 200 LSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGGFWVGIHSRRK 268 (359)
Q Consensus 200 ~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lwv~~~~~~~ 268 (359)
..+.|-+||.|--- |+|++.++..|..|.+...+.=....-....+-..++.+++..++.++......
T Consensus 206 DRGVNwaAfhpTlp-liVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDks 273 (1202)
T KOG0292|consen 206 DRGVNWAAFHPTLP-LIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKS 273 (1202)
T ss_pred ccccceEEecCCcc-eEEecCCcceeeEEEeccccceeehhhhcccCCcceEEecCccceeEecCCCcc
Confidence 34556677876443 899998888877777643321111110011122345777887777777666554
No 253
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=95.18 E-value=1.8 Score=37.06 Aligned_cols=159 Identities=14% Similarity=0.188 Sum_probs=91.9
Q ss_pred ceEEEEecCCCeEEEEeCCCcEEEEeCCCCeEEEEeecCCCccccccceEEE-eCCCCEEEEEeCCCccccccceeeeee
Q 018242 98 PLGLCFNKTNGDLYIADAYFGLLKVGPEGGLATAVATQSEGIPFRFCNSLDI-DQSTGIIYFTDSSSQFQRRNHISVILS 176 (359)
Q Consensus 98 p~gi~~~~~~g~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-d~~g~~l~v~d~~~~~~~~~~~~~~~~ 176 (359)
.+.|.++|+.+.++.+.....++-+|.++|+++....-. -..++.++- ..++. ++-+
T Consensus 117 INam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGH----tDYvH~vv~R~~~~q-ilsG----------------- 174 (325)
T KOG0649|consen 117 INAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGH----TDYVHSVVGRNANGQ-ILSG----------------- 174 (325)
T ss_pred cceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCC----cceeeeeeecccCcc-eeec-----------------
Confidence 357889988888888864445999999999987543211 124445544 34455 4333
Q ss_pred cCCCceEEEEeCCCCcEEEEeCCCCCCc---------eEEEccCCCEEEEEecCCCEEEEEEcCCCCCcceeEeecCCCC
Q 018242 177 GDKTGRLMKYDPATKQVTVLLGNLSFPN---------GVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGF 247 (359)
Q Consensus 177 ~~~~g~v~~~d~~~~~~~~~~~~~~~p~---------gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 247 (359)
..+|.+..||.++++..........|+ ..|+..+..+|... .+..+..|.+..... ......++.
T Consensus 175 -~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~edWlvCG--gGp~lslwhLrsse~---t~vfpipa~ 248 (325)
T KOG0649|consen 175 -AEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNEDWLVCG--GGPKLSLWHLRSSES---TCVFPIPAR 248 (325)
T ss_pred -CCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEeccCceEEec--CCCceeEEeccCCCc---eEEEecccc
Confidence 456788899988876554443332222 23555555544333 445677777654321 122233443
Q ss_pred CCceEECCCCCEEEEEecCCCccccccccCCccceeeecCCccc
Q 018242 248 PDNIKRSPRGGFWVGIHSRRKGISKLVLSFPWIGNVLIKLPIDI 291 (359)
Q Consensus 248 p~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 291 (359)
-..+.++.+ .+.++..+.. +..+...|.+...+|...
T Consensus 249 v~~v~F~~d-~vl~~G~g~~------v~~~~l~Gvl~a~ip~~s 285 (325)
T KOG0649|consen 249 VHLVDFVDD-CVLIGGEGNH------VQSYTLNGVLQANIPVES 285 (325)
T ss_pred eeEeeeecc-eEEEeccccc------eeeeeeccEEEEeccCCc
Confidence 445666543 3555443433 566777888888877653
No 254
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=95.16 E-value=0.95 Score=41.02 Aligned_cols=149 Identities=10% Similarity=0.114 Sum_probs=84.6
Q ss_pred ceEEEccCCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCC-cceEEEEecCCCeEEEEeC
Q 018242 37 ESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICG-RPLGLCFNKTNGDLYIADA 115 (359)
Q Consensus 37 ~~i~~~~~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~p~gi~~~~~~g~l~v~~~ 115 (359)
.++.+.+.+. +|.+..++.|..||..+++... ....+ ....+.+.+ ..+|.++..
T Consensus 264 s~V~w~d~~v-~yS~SwDHTIk~WDletg~~~~----------------------~~~~~ksl~~i~~~~-~~~Ll~~gs 319 (423)
T KOG0313|consen 264 SSVVWSDATV-IYSVSWDHTIKVWDLETGGLKS----------------------TLTTNKSLNCISYSP-LSKLLASGS 319 (423)
T ss_pred eeEEEcCCCc-eEeecccceEEEEEeeccccee----------------------eeecCcceeEeeccc-ccceeeecC
Confidence 3666766555 9999999999999998873221 11111 234667777 666766644
Q ss_pred CC-cEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCCcEE
Q 018242 116 YF-GLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQVT 194 (359)
Q Consensus 116 ~~-~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~ 194 (359)
.. -|..+||.++.-.......-+ ..+.+.++.+.|...+++++- +..+.+..+|..+-...
T Consensus 320 sdr~irl~DPR~~~gs~v~~s~~g-H~nwVssvkwsp~~~~~~~S~-----------------S~D~t~klWDvRS~k~p 381 (423)
T KOG0313|consen 320 SDRHIRLWDPRTGDGSVVSQSLIG-HKNWVSSVKWSPTNEFQLVSG-----------------SYDNTVKLWDVRSTKAP 381 (423)
T ss_pred CCCceeecCCCCCCCceeEEeeec-chhhhhheecCCCCceEEEEE-----------------ecCCeEEEEEeccCCCc
Confidence 44 477789987643222111111 224788899999888777763 33566777776543211
Q ss_pred --EEeCCCCCCceEEEccCCCEEEEEecCCCEEEEEE
Q 018242 195 --VLLGNLSFPNGVALSEDGNYILLAETTSCRILRYW 229 (359)
Q Consensus 195 --~~~~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~ 229 (359)
.+..+....-.+.+. ++ .+++++..++.|..+.
T Consensus 382 lydI~~h~DKvl~vdW~-~~-~~IvSGGaD~~l~i~~ 416 (423)
T KOG0313|consen 382 LYDIAGHNDKVLSVDWN-EG-GLIVSGGADNKLRIFK 416 (423)
T ss_pred ceeeccCCceEEEEecc-CC-ceEEeccCcceEEEec
Confidence 122221111122222 22 2666666666776654
No 255
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=95.13 E-value=1.8 Score=43.36 Aligned_cols=153 Identities=15% Similarity=0.071 Sum_probs=88.5
Q ss_pred CceEEEccCCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEE-Ee
Q 018242 36 PESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYI-AD 114 (359)
Q Consensus 36 p~~i~~~~~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v-~~ 114 (359)
|..|...+.|...++..+ ..++.|+........... + ....+. ......++++ .++..+ ++
T Consensus 163 ~~~I~~~~~ge~~~i~~~-~~~~~~~v~~~~~~~~~~------------~---~~~~Ht-f~~t~~~~sp-n~~~~Aa~d 224 (792)
T KOG1963|consen 163 PKSIVDNNSGEFKGIVHM-CKIHIYFVPKHTKHTSSR------------D---ITVHHT-FNITCVALSP-NERYLAAGD 224 (792)
T ss_pred CccEEEcCCceEEEEEEe-eeEEEEEecccceeeccc------------h---hhhhhc-ccceeEEecc-ccceEEEec
Confidence 889999999984455555 567777765532111100 0 011111 1134566777 544443 34
Q ss_pred CCCcEEEEe-CC--CCeE--EEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCC
Q 018242 115 AYFGLLKVG-PE--GGLA--TAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPA 189 (359)
Q Consensus 115 ~~~~i~~~~-~~--~~~~--~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~ 189 (359)
..++|..+. .. .... +.+.- ....++.++++.+|.+||-+ +..+-+.+|..+
T Consensus 225 ~dGrI~vw~d~~~~~~~~t~t~lHW-----H~~~V~~L~fS~~G~~LlSG------------------G~E~VLv~Wq~~ 281 (792)
T KOG1963|consen 225 SDGRILVWRDFGSSDDSETCTLLHW-----HHDEVNSLSFSSDGAYLLSG------------------GREGVLVLWQLE 281 (792)
T ss_pred cCCcEEEEeccccccccccceEEEe-----cccccceeEEecCCceEeec------------------ccceEEEEEeec
Confidence 444455442 22 1111 11111 12357789999999855544 445556678887
Q ss_pred CCcEEEEeCCCCCC-ceEEEccCCCEEEEEecCCCEEEEEEcC
Q 018242 190 TKQVTVLLGNLSFP-NGVALSEDGNYILLAETTSCRILRYWLK 231 (359)
Q Consensus 190 ~~~~~~~~~~~~~p-~gia~~~d~~~l~v~~~~~~~i~~~~~~ 231 (359)
+++ +.+.+.+..| .++.++||+. +|..-..++.|..+...
T Consensus 282 T~~-kqfLPRLgs~I~~i~vS~ds~-~~sl~~~DNqI~li~~~ 322 (792)
T KOG1963|consen 282 TGK-KQFLPRLGSPILHIVVSPDSD-LYSLVLEDNQIHLIKAS 322 (792)
T ss_pred CCC-cccccccCCeeEEEEEcCCCC-eEEEEecCceEEEEecc
Confidence 776 5555555544 6899999998 67766778899888763
No 256
>PF07494 Reg_prop: Two component regulator propeller; InterPro: IPR011110 A large group of two component regulator proteins appear to have the same N-terminal structure of 14 tandem repeats. These repeats show homology to members of IPR002372 from INTERPRO and IPR001680 from INTERPRO indicating that they are likely to form a beta-propeller. This family has been built with artificially high cut-offs in order to avoid overlaps with other beta-propeller families. The fourteen repeats are likely to form two propellers; it is not clear if these structures are likely to recruit other proteins or interact with DNA.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.
Probab=95.01 E-value=0.032 Score=29.25 Aligned_cols=16 Identities=25% Similarity=0.648 Sum_probs=12.9
Q ss_pred CceEECCCCCEEEEEe
Q 018242 249 DNIKRSPRGGFWVGIH 264 (359)
Q Consensus 249 ~~i~~d~~G~lwv~~~ 264 (359)
..|+.|++|+||+++.
T Consensus 8 ~~i~~D~~G~lWigT~ 23 (24)
T PF07494_consen 8 YSIYEDSDGNLWIGTY 23 (24)
T ss_dssp EEEEE-TTSCEEEEET
T ss_pred EEEEEcCCcCEEEEeC
Confidence 4588999999999985
No 257
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=94.96 E-value=3.1 Score=38.67 Aligned_cols=103 Identities=15% Similarity=0.184 Sum_probs=57.4
Q ss_pred CCeEEEEeCCCcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEE
Q 018242 107 NGDLYIADAYFGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKY 186 (359)
Q Consensus 107 ~g~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~ 186 (359)
++++|++...+.|..+|+++++......... .....+.-....+|+ +|+++. .+.++++
T Consensus 68 dg~v~~~~~~G~i~A~d~~~g~~~W~~~~~~--~~~~~~~~~~~~~G~-i~~g~~------------------~g~~y~l 126 (370)
T COG1520 68 DGTVYVGTRDGNIFALNPDTGLVKWSYPLLG--AVAQLSGPILGSDGK-IYVGSW------------------DGKLYAL 126 (370)
T ss_pred CCeEEEecCCCcEEEEeCCCCcEEecccCcC--cceeccCceEEeCCe-EEEecc------------------cceEEEE
Confidence 8899998655569999999887532111111 011222333334898 999943 3479999
Q ss_pred eCCCCcEEEEeCCCCCC--ceEEEccCCCEEEEEecCCCEEEEEEcCC
Q 018242 187 DPATKQVTVLLGNLSFP--NGVALSEDGNYILLAETTSCRILRYWLKT 232 (359)
Q Consensus 187 d~~~~~~~~~~~~~~~p--~gia~~~d~~~l~v~~~~~~~i~~~~~~~ 232 (359)
|.++|+..........+ .+-++-.++ .+|+.. .++.++.++.+.
T Consensus 127 d~~~G~~~W~~~~~~~~~~~~~~v~~~~-~v~~~s-~~g~~~al~~~t 172 (370)
T COG1520 127 DASTGTLVWSRNVGGSPYYASPPVVGDG-TVYVGT-DDGHLYALNADT 172 (370)
T ss_pred ECCCCcEEEEEecCCCeEEecCcEEcCc-EEEEec-CCCeEEEEEccC
Confidence 99777776543221101 111122244 245543 556777777543
No 258
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=94.95 E-value=4.1 Score=39.97 Aligned_cols=203 Identities=11% Similarity=0.073 Sum_probs=104.6
Q ss_pred CCCceEEEccCCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEE
Q 018242 34 IGPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIA 113 (359)
Q Consensus 34 ~~p~~i~~~~~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~ 113 (359)
..-+.+++-|||.-+.++.. .+++.||++.+.... .+...-.....++++. +|+.|.+
T Consensus 13 hci~d~afkPDGsqL~lAAg-~rlliyD~ndG~llq--------------------tLKgHKDtVycVAys~-dGkrFAS 70 (1081)
T KOG1538|consen 13 HCINDIAFKPDGTQLILAAG-SRLLVYDTSDGTLLQ--------------------PLKGHKDTVYCVAYAK-DGKRFAS 70 (1081)
T ss_pred cchheeEECCCCceEEEecC-CEEEEEeCCCccccc--------------------ccccccceEEEEEEcc-CCceecc
Confidence 35678999999997777766 589999998763221 1222223466788888 8888876
Q ss_pred eCCCc-EEEEeCC-CCe--------EEEEee-cC---------C-------C-------ccccccceEEEeCCCCEEEEE
Q 018242 114 DAYFG-LLKVGPE-GGL--------ATAVAT-QS---------E-------G-------IPFRFCNSLDIDQSTGIIYFT 159 (359)
Q Consensus 114 ~~~~~-i~~~~~~-~~~--------~~~~~~-~~---------~-------~-------~~~~~~~~l~~d~~g~~l~v~ 159 (359)
...+. +..++++ .|. .+-+.- +. . . .....+++.++..||.++-++
T Consensus 71 G~aDK~VI~W~~klEG~LkYSH~D~IQCMsFNP~~h~LasCsLsdFglWS~~qK~V~K~kss~R~~~CsWtnDGqylalG 150 (1081)
T KOG1538|consen 71 GSADKSVIIWTSKLEGILKYSHNDAIQCMSFNPITHQLASCSLSDFGLWSPEQKSVSKHKSSSRIICCSWTNDGQYLALG 150 (1081)
T ss_pred CCCceeEEEecccccceeeeccCCeeeEeecCchHHHhhhcchhhccccChhhhhHHhhhhheeEEEeeecCCCcEEEEe
Confidence 43332 3333332 111 111100 00 0 0 011245566777777733333
Q ss_pred eCCCccccccceeeeeecCCCceEEEEeCCCCcEEEEe--CC--CCCCceEEEccCC-----CEEEEEecCCCEEEEEEc
Q 018242 160 DSSSQFQRRNHISVILSGDKTGRLMKYDPATKQVTVLL--GN--LSFPNGVALSEDG-----NYILLAETTSCRILRYWL 230 (359)
Q Consensus 160 d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~--~~--~~~p~gia~~~d~-----~~l~v~~~~~~~i~~~~~ 230 (359)
...|.|-.-+.. ++..... ++ .....+|+++|.. .++-|.+ .+.++.-|.+
T Consensus 151 ------------------~~nGTIsiRNk~-gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~D-W~qTLSFy~L 210 (1081)
T KOG1538|consen 151 ------------------MFNGTISIRNKN-GEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVAD-WGQTLSFYQL 210 (1081)
T ss_pred ------------------ccCceEEeecCC-CCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEe-ccceeEEEEe
Confidence 224555555543 3333222 11 2334688888743 2344443 3345555555
Q ss_pred CCCCCcceeEeecCCCCCCceEECCCCC-EEEEEecCCCccccccccCCccceeeecC
Q 018242 231 KTSKAGTIEIVAQLPGFPDNIKRSPRGG-FWVGIHSRRKGISKLVLSFPWIGNVLIKL 287 (359)
Q Consensus 231 ~~~~~~~~~~~~~~~~~p~~i~~d~~G~-lwv~~~~~~~~~~~~~~~~~~~g~~~~~~ 287 (359)
++...++.+. +.--|..+..=++|. +.++..... +..|+++|-.+.++
T Consensus 211 sG~~Igk~r~---L~FdP~CisYf~NGEy~LiGGsdk~------L~~fTR~GvrLGTv 259 (1081)
T KOG1538|consen 211 SGKQIGKDRA---LNFDPCCISYFTNGEYILLGGSDKQ------LSLFTRDGVRLGTV 259 (1081)
T ss_pred cceeeccccc---CCCCchhheeccCCcEEEEccCCCc------eEEEeecCeEEeec
Confidence 4432221111 222355555556775 555554443 66777777776654
No 259
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.91 E-value=0.24 Score=50.66 Aligned_cols=215 Identities=20% Similarity=0.214 Sum_probs=109.9
Q ss_pred eEEEccCCCe----eEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEE
Q 018242 38 SLAFDALGEG----PYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIA 113 (359)
Q Consensus 38 ~i~~~~~G~~----l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~ 113 (359)
.+++.+.|.. +..+..+|.|..||+..- .. +.+.+-+.......+...|+.|.+..+++..+
T Consensus 69 kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~-~~-------------~~~~~~la~~~~h~G~V~gLDfN~~q~nlLAS 134 (1049)
T KOG0307|consen 69 KLAWGSYGSHSHGLIAGGLEDGNIVLYDPASI-IA-------------NASEEVLATKSKHTGPVLGLDFNPFQGNLLAS 134 (1049)
T ss_pred eeeecccCCCccceeeccccCCceEEecchhh-cc-------------CcchHHHhhhcccCCceeeeeccccCCceeec
Confidence 4555554432 666788899999998641 00 00000001223344567899999966767766
Q ss_pred eCCC-cEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCCc
Q 018242 114 DAYF-GLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQ 192 (359)
Q Consensus 114 ~~~~-~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~ 192 (359)
...+ .|+.+|.+.-+ +.+.. ........+..+.+..+-.+|+.+ .+..|....||...++
T Consensus 135 Ga~~geI~iWDlnn~~-tP~~~-~~~~~~~eI~~lsWNrkvqhILAS-----------------~s~sg~~~iWDlr~~~ 195 (1049)
T KOG0307|consen 135 GADDGEILIWDLNKPE-TPFTP-GSQAPPSEIKCLSWNRKVSHILAS-----------------GSPSGRAVIWDLRKKK 195 (1049)
T ss_pred cCCCCcEEEeccCCcC-CCCCC-CCCCCcccceEeccchhhhHHhhc-----------------cCCCCCceeccccCCC
Confidence 4443 59999987532 12211 011122344455666554445544 2234567778876432
Q ss_pred EEE-EeCC--CCCCceEEEccCCCEEEEEecCCC---EEEEEEcCCCCCcceeEeecCCCCCCceEECCCC-CEEEEEec
Q 018242 193 VTV-LLGN--LSFPNGVALSEDGNYILLAETTSC---RILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRG-GFWVGIHS 265 (359)
Q Consensus 193 ~~~-~~~~--~~~p~gia~~~d~~~l~v~~~~~~---~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G-~lwv~~~~ 265 (359)
-.. +... ...-+++++.|++.+.+++.++++ .|..||+.-.. ...+.+.......-.|.+.+.+ ++.+++..
T Consensus 196 pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~as-sP~k~~~~H~~GilslsWc~~D~~lllSsgk 274 (1049)
T KOG0307|consen 196 PIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFAS-SPLKILEGHQRGILSLSWCPQDPRLLLSSGK 274 (1049)
T ss_pred cccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccC-CchhhhcccccceeeeccCCCCchhhhcccC
Confidence 111 1111 122468999999877666666654 45667654221 1122221111112234444544 45554444
Q ss_pred CCCccccccccCC-ccceeeecCCccc
Q 018242 266 RRKGISKLVLSFP-WIGNVLIKLPIDI 291 (359)
Q Consensus 266 ~~~~~~~~~~~~~-~~g~~~~~~~~~~ 291 (359)
.+. +.+.+ .+|+++..++...
T Consensus 275 D~~-----ii~wN~~tgEvl~~~p~~~ 296 (1049)
T KOG0307|consen 275 DNR-----IICWNPNTGEVLGELPAQG 296 (1049)
T ss_pred CCC-----eeEecCCCceEeeecCCCC
Confidence 333 44443 4678888777643
No 260
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=94.88 E-value=3.1 Score=41.24 Aligned_cols=181 Identities=12% Similarity=0.004 Sum_probs=100.5
Q ss_pred ceEEEccCCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEE-eC
Q 018242 37 ESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIA-DA 115 (359)
Q Consensus 37 ~~i~~~~~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~-~~ 115 (359)
.++...++..++.++..+|.|..|+...... .+ .+.....+..-+.||. .|..+++ ..
T Consensus 69 t~l~~~~d~l~lAVGYaDGsVqif~~~s~~~-~~-------------------tfngHK~AVt~l~fd~-~G~rlaSGsk 127 (888)
T KOG0306|consen 69 TCLRSSDDILLLAVGYADGSVQIFSLESEEI-LI-------------------TFNGHKAAVTTLKFDK-IGTRLASGSK 127 (888)
T ss_pred EEeeccCCcceEEEEecCceEEeeccCCCce-ee-------------------eecccccceEEEEEcc-cCceEeecCC
Confidence 3555556676678999999999999875411 10 1222233456778888 4555554 43
Q ss_pred CCcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCCcEEE
Q 018242 116 YFGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQVTV 195 (359)
Q Consensus 116 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~ 195 (359)
...|..+|.-+..-..... .. ...+.+.-+..+.+ +.|+. +.++-+-.||.++..+..
T Consensus 128 Dt~IIvwDlV~E~Gl~rL~-GH---kd~iT~~~F~~~~~-~lvS~-----------------sKDs~iK~WdL~tqhCf~ 185 (888)
T KOG0306|consen 128 DTDIIVWDLVGEEGLFRLR-GH---KDSITQALFLNGDS-FLVSV-----------------SKDSMIKFWDLETQHCFE 185 (888)
T ss_pred CccEEEEEeccceeeEEee-cc---hHHHhHHhccCCCe-EEEEe-----------------ccCceEEEEecccceeee
Confidence 4458888875433221111 11 11222333333444 66663 234567788888766543
Q ss_pred E-eCCCCCCceEEEccCCCEEEEEecCCCEEEEEEcC--CCC-C-------cceeEeec-CCCCCCceEECCCCCEEEEE
Q 018242 196 L-LGNLSFPNGVALSEDGNYILLAETTSCRILRYWLK--TSK-A-------GTIEIVAQ-LPGFPDNIKRSPRGGFWVGI 263 (359)
Q Consensus 196 ~-~~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~--~~~-~-------~~~~~~~~-~~~~p~~i~~d~~G~lwv~~ 263 (359)
. ...-....++++.+ + +.++...+..+.+|++. .+. . .....+.. ..+.+.+++.|.++++.+..
T Consensus 186 Thvd~r~Eiw~l~~~~--~-~lvt~~~dse~~v~~L~~~~D~~~~~~~~s~~~~G~~~rqsk~R~i~l~~d~s~r~~~c~ 262 (888)
T KOG0306|consen 186 THVDHRGEIWALVLDE--K-LLVTAGTDSELKVWELAFEDDEKETNRYISTKLRGTFIRQSKGREINLVTDFSDRFLVCQ 262 (888)
T ss_pred EEecccceEEEEEEec--c-eEEEEecCCceEEEEeecccccccccccceeeccceeeeccCCceeEEeecCcccEEEEe
Confidence 2 23334467888876 3 56666666778888873 111 1 11112222 23457778888888855544
No 261
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=94.75 E-value=0.81 Score=41.46 Aligned_cols=157 Identities=12% Similarity=0.102 Sum_probs=89.6
Q ss_pred ceEEEcc--CCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEEe
Q 018242 37 ESLAFDA--LGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIAD 114 (359)
Q Consensus 37 ~~i~~~~--~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~~ 114 (359)
.++.++| .|+ +..+.-.+.|+.|.+.++.|..=.. .+.......-+|..+|....++.+-
T Consensus 215 y~LdWSp~~~g~-LlsGDc~~~I~lw~~~~g~W~vd~~-----------------Pf~gH~~SVEDLqWSptE~~vfaSc 276 (440)
T KOG0302|consen 215 YGLDWSPIKTGR-LLSGDCVKGIHLWEPSTGSWKVDQR-----------------PFTGHTKSVEDLQWSPTEDGVFASC 276 (440)
T ss_pred eeeecccccccc-cccCccccceEeeeeccCceeecCc-----------------cccccccchhhhccCCccCceEEee
Confidence 4666666 466 5555555789999998887764211 1111112244677887677777764
Q ss_pred CCC-cEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCCcE
Q 018242 115 AYF-GLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQV 193 (359)
Q Consensus 115 ~~~-~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~ 193 (359)
.-+ .|..+|...+..+.-... ......+|-|.+..+-. +.++ +...|.+-.+|...-+.
T Consensus 277 S~DgsIrIWDiRs~~~~~~~~~--kAh~sDVNVISWnr~~~-lLas-----------------G~DdGt~~iwDLR~~~~ 336 (440)
T KOG0302|consen 277 SCDGSIRIWDIRSGPKKAAVST--KAHNSDVNVISWNRREP-LLAS-----------------GGDDGTLSIWDLRQFKS 336 (440)
T ss_pred ecCceEEEEEecCCCccceeEe--eccCCceeeEEccCCcc-eeee-----------------cCCCceEEEEEhhhccC
Confidence 433 477778776632221111 11112455566655544 3333 33456666677653222
Q ss_pred E----EEeCCCCCCceEEEccCCCEEEEEecCCCEEEEEEcC
Q 018242 194 T----VLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLK 231 (359)
Q Consensus 194 ~----~~~~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~ 231 (359)
. .+..+......|.+.|.....+.+...+++|..||+.
T Consensus 337 ~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDls 378 (440)
T KOG0302|consen 337 GQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLS 378 (440)
T ss_pred CCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEee
Confidence 1 2222333457889998776677777888999999985
No 262
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=94.70 E-value=4.7 Score=39.50 Aligned_cols=171 Identities=14% Similarity=0.101 Sum_probs=97.7
Q ss_pred CCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEEeCCCcEEEEe
Q 018242 44 LGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIADAYFGLLKVG 123 (359)
Q Consensus 44 ~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~~~~~~i~~~~ 123 (359)
+|. +..+..+..|..|+..++....- .+....+...++++...++.++.+.....+..+|
T Consensus 218 ~~~-~~~~s~~~tl~~~~~~~~~~i~~-------------------~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd 277 (537)
T KOG0274|consen 218 DGF-FKSGSDDSTLHLWDLNNGYLILT-------------------RLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWD 277 (537)
T ss_pred cCe-EEecCCCceeEEeecccceEEEe-------------------eccCCCCCceeEEEecCCCEEEEEecCCcEEeEe
Confidence 455 77788888999999887633221 1344445678898887344444455455688889
Q ss_pred CCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCCcEEEEeC-CCCC
Q 018242 124 PEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQVTVLLG-NLSF 202 (359)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~-~~~~ 202 (359)
..+|+-...... ..+.+.....+..+.++ ++....|.+|+.+++....+.. ....
T Consensus 278 ~~sg~C~~~l~g-------h~stv~~~~~~~~~~~s-----------------gs~D~tVkVW~v~n~~~l~l~~~h~~~ 333 (537)
T KOG0274|consen 278 CSTGECTHSLQG-------HTSSVRCLTIDPFLLVS-----------------GSRDNTVKVWDVTNGACLNLLRGHTGP 333 (537)
T ss_pred cCCCcEEEEecC-------CCceEEEEEccCceEee-----------------ccCCceEEEEeccCcceEEEecccccc
Confidence 888876554321 11122222222212222 2345567777777666655544 3444
Q ss_pred CceEEEccCCCEEEEEecCCCEEEEEEcCCCCCcceeEeecCCC---CCCceEECCCCCEEEEEecC
Q 018242 203 PNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPG---FPDNIKRSPRGGFWVGIHSR 266 (359)
Q Consensus 203 p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~---~p~~i~~d~~G~lwv~~~~~ 266 (359)
.+.+.++ +. ++++.+.++.|.+|++... +.+..+.+ ....+.++....++-+..+.
T Consensus 334 V~~v~~~--~~-~lvsgs~d~~v~VW~~~~~-----~cl~sl~gH~~~V~sl~~~~~~~~~Sgs~D~ 392 (537)
T KOG0274|consen 334 VNCVQLD--EP-LLVSGSYDGTVKVWDPRTG-----KCLKSLSGHTGRVYSLIVDSENRLLSGSLDT 392 (537)
T ss_pred EEEEEec--CC-EEEEEecCceEEEEEhhhc-----eeeeeecCCcceEEEEEecCcceEEeeeecc
Confidence 5666665 33 7788888889999997532 22222222 23446666654455566553
No 263
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=94.68 E-value=2.6 Score=36.51 Aligned_cols=151 Identities=15% Similarity=0.020 Sum_probs=81.3
Q ss_pred CceEEEccCCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEEeC
Q 018242 36 PESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIADA 115 (359)
Q Consensus 36 p~~i~~~~~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~~~ 115 (359)
|--+..|. ..++|++...+.+...|+.++...+..+. +.+.-+-+.-- ++.+.++-.
T Consensus 15 pLVV~~ds-kT~v~igSHs~~~~avd~~sG~~~We~il---------------------g~RiE~sa~vv-gdfVV~GCy 71 (354)
T KOG4649|consen 15 PLVVCNDS-KTLVVIGSHSGIVIAVDPQSGNLIWEAIL---------------------GVRIECSAIVV-GDFVVLGCY 71 (354)
T ss_pred cEEEecCC-ceEEEEecCCceEEEecCCCCcEEeehhh---------------------CceeeeeeEEE-CCEEEEEEc
Confidence 33333333 34577888888899999998865543211 11111111112 556777777
Q ss_pred CCcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCCcEEE
Q 018242 116 YFGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQVTV 195 (359)
Q Consensus 116 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~ 195 (359)
.+++|.++.++|..-......... . ..-..|+++.-+|.+ +-++..|.+|+.+.....
T Consensus 72 ~g~lYfl~~~tGs~~w~f~~~~~v---k-~~a~~d~~~glIycg------------------shd~~~yalD~~~~~cVy 129 (354)
T KOG4649|consen 72 SGGLYFLCVKTGSQIWNFVILETV---K-VRAQCDFDGGLIYCG------------------SHDGNFYALDPKTYGCVY 129 (354)
T ss_pred cCcEEEEEecchhheeeeeehhhh---c-cceEEcCCCceEEEe------------------cCCCcEEEecccccceEE
Confidence 778999999988421111101100 1 123667777757777 234567777776543322
Q ss_pred EeC-CCCCCceEEEccCCCEEEEEecCCCEEEEEEcCC
Q 018242 196 LLG-NLSFPNGVALSEDGNYILLAETTSCRILRYWLKT 232 (359)
Q Consensus 196 ~~~-~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~ 232 (359)
-.. +...-.+-++++-...||++.+. +.+.+...++
T Consensus 130 kskcgG~~f~sP~i~~g~~sly~a~t~-G~vlavt~~~ 166 (354)
T KOG4649|consen 130 KSKCGGGTFVSPVIAPGDGSLYAAITA-GAVLAVTKNP 166 (354)
T ss_pred ecccCCceeccceecCCCceEEEEecc-ceEEEEccCC
Confidence 111 11111234566633348988754 5777766543
No 264
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=94.63 E-value=3.3 Score=37.45 Aligned_cols=153 Identities=9% Similarity=0.047 Sum_probs=92.9
Q ss_pred eEEEccCCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEEeCCC
Q 018242 38 SLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIADAYF 117 (359)
Q Consensus 38 ~i~~~~~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~~~~~ 117 (359)
.+.+.|+--+.++++.++.|..||..+++... .+.........|.|+. .|.+.+....+
T Consensus 113 ~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~--------------------~LrGHt~sv~di~~~a-~Gk~l~tcSsD 171 (406)
T KOG0295|consen 113 RVIFHPSEALVVSASEDATIKVFDTETGELER--------------------SLRGHTDSVFDISFDA-SGKYLATCSSD 171 (406)
T ss_pred eeeeccCceEEEEecCCceEEEEEccchhhhh--------------------hhhccccceeEEEEec-CccEEEecCCc
Confidence 44556766656677789999999999885421 2333334467888998 66666654433
Q ss_pred -cEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCCcEEE-
Q 018242 118 -GLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQVTV- 195 (359)
Q Consensus 118 -~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~- 195 (359)
.+..+|.++- .+.+.. ..+ ....+..+.+-|.|. ||.. ..+...|..++-+++....
T Consensus 172 l~~~LWd~~~~-~~c~ks-~~g-h~h~vS~V~f~P~gd--~ilS----------------~srD~tik~We~~tg~cv~t 230 (406)
T KOG0295|consen 172 LSAKLWDFDTF-FRCIKS-LIG-HEHGVSSVFFLPLGD--HILS----------------CSRDNTIKAWECDTGYCVKT 230 (406)
T ss_pred cchhheeHHHH-HHHHHH-hcC-cccceeeEEEEecCC--eeee----------------cccccceeEEecccceeEEe
Confidence 2455555431 110000 001 223566788888887 3331 2344567778877775543
Q ss_pred EeCCCCCCceEEEccCCCEEEEEecCCCEEEEEEcCCC
Q 018242 196 LLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTS 233 (359)
Q Consensus 196 ~~~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~ 233 (359)
+........-+....||. ++.+.+.+++|..|-....
T Consensus 231 ~~~h~ewvr~v~v~~DGt-i~As~s~dqtl~vW~~~t~ 267 (406)
T KOG0295|consen 231 FPGHSEWVRMVRVNQDGT-IIASCSNDQTLRVWVVATK 267 (406)
T ss_pred ccCchHhEEEEEecCCee-EEEecCCCceEEEEEeccc
Confidence 333334456778888885 8888888999999976543
No 265
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=94.55 E-value=4 Score=38.03 Aligned_cols=203 Identities=12% Similarity=0.058 Sum_probs=101.9
Q ss_pred eCCCCCCceEEEccCCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCccccccccc--ccCCcceEEEEecCC
Q 018242 30 IEGAIGPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKE--HICGRPLGLCFNKTN 107 (359)
Q Consensus 30 ~~~~~~p~~i~~~~~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~p~gi~~~~~~ 107 (359)
-+-.-.+-++++.+++.+.|.+..++.|.+|+..++.-..+-.+.+...-..+-+. ... ........+++++ +
T Consensus 139 ~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~----k~~r~~h~keil~~avS~-D 213 (479)
T KOG0299|consen 139 GKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPL----KESRKGHVKEILTLAVSS-D 213 (479)
T ss_pred ccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCC----CcccccccceeEEEEEcC-C
Confidence 33345677999999998899999999999999877643311111100000000000 011 1122345788999 7
Q ss_pred CeEEEEeCCC-cEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEE
Q 018242 108 GDLYIADAYF-GLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKY 186 (359)
Q Consensus 108 g~l~v~~~~~-~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~ 186 (359)
|..++....+ -|..++.++.+........ -..+.++++-..-+.+|.+. ...+|-.|
T Consensus 214 gkylatgg~d~~v~Iw~~~t~ehv~~~~gh----r~~V~~L~fr~gt~~lys~s------------------~Drsvkvw 271 (479)
T KOG0299|consen 214 GKYLATGGRDRHVQIWDCDTLEHVKVFKGH----RGAVSSLAFRKGTSELYSAS------------------ADRSVKVW 271 (479)
T ss_pred CcEEEecCCCceEEEecCcccchhhccccc----ccceeeeeeecCccceeeee------------------cCCceEEE
Confidence 7766654333 4668888877643221111 12345666654433377772 22345555
Q ss_pred eCCCCc-EEEEeCCCCCCceEEEccCCCEEEEEecCCCEEEEEEcCCCCCcceeEeecCCCCCCceEECCCCCEEEEE
Q 018242 187 DPATKQ-VTVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGGFWVGI 263 (359)
Q Consensus 187 d~~~~~-~~~~~~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lwv~~ 263 (359)
+.+... ++.+.++-....+|....-++ +.-....+.++..|++... ...+|....+.++.+++=.+-.+..++
T Consensus 272 ~~~~~s~vetlyGHqd~v~~IdaL~reR-~vtVGgrDrT~rlwKi~ee---sqlifrg~~~sidcv~~In~~HfvsGS 345 (479)
T KOG0299|consen 272 SIDQLSYVETLYGHQDGVLGIDALSRER-CVTVGGRDRTVRLWKIPEE---SQLIFRGGEGSIDCVAFINDEHFVSGS 345 (479)
T ss_pred ehhHhHHHHHHhCCccceeeechhcccc-eEEeccccceeEEEecccc---ceeeeeCCCCCeeeEEEecccceeecc
Confidence 544221 112222222223332222333 4444445567777876322 223344445567777775444344433
No 266
>PHA02790 Kelch-like protein; Provisional
Probab=94.48 E-value=4 Score=39.53 Aligned_cols=133 Identities=13% Similarity=0.061 Sum_probs=71.4
Q ss_pred CEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEEeCC---CcEEEEeCCCCeEEE
Q 018242 55 GRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIADAY---FGLLKVGPEGGLATA 131 (359)
Q Consensus 55 ~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~~~~---~~i~~~~~~~~~~~~ 131 (359)
..+.+||+.+++|...+..+ . ...-.+++. - ++.||+.... ..+.++++.++++..
T Consensus 287 ~~v~~Ydp~~~~W~~~~~m~------------------~-~r~~~~~v~-~-~~~iYviGG~~~~~sve~ydp~~n~W~~ 345 (480)
T PHA02790 287 NNAIAVNYISNNWIPIPPMN------------------S-PRLYASGVP-A-NNKLYVVGGLPNPTSVERWFHGDAAWVN 345 (480)
T ss_pred CeEEEEECCCCEEEECCCCC------------------c-hhhcceEEE-E-CCEEEEECCcCCCCceEEEECCCCeEEE
Confidence 35789999988777653111 0 011123332 2 7899987432 247889998887765
Q ss_pred EeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCCcEEEEeCCCCCCc--eEEEc
Q 018242 132 VATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQVTVLLGNLSFPN--GVALS 209 (359)
Q Consensus 132 ~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~p~--gia~~ 209 (359)
+..- +.......++.-+|+ ||+.-... .....+.+|||.+++..... ....|. .-+..
T Consensus 346 ~~~l----~~~r~~~~~~~~~g~-IYviGG~~--------------~~~~~ve~ydp~~~~W~~~~-~m~~~r~~~~~~~ 405 (480)
T PHA02790 346 MPSL----LKPRCNPAVASINNV-IYVIGGHS--------------ETDTTTEYLLPNHDQWQFGP-STYYPHYKSCALV 405 (480)
T ss_pred CCCC----CCCCcccEEEEECCE-EEEecCcC--------------CCCccEEEEeCCCCEEEeCC-CCCCccccceEEE
Confidence 4321 111112223334677 99972110 01135778999887766542 222221 11222
Q ss_pred cCCCEEEEEecCCCEEEEEEcCC
Q 018242 210 EDGNYILLAETTSCRILRYWLKT 232 (359)
Q Consensus 210 ~d~~~l~v~~~~~~~i~~~~~~~ 232 (359)
-++ .+|+.+ +...+|+...
T Consensus 406 ~~~-~IYv~G---G~~e~ydp~~ 424 (480)
T PHA02790 406 FGR-RLFLVG---RNAEFYCESS 424 (480)
T ss_pred ECC-EEEEEC---CceEEecCCC
Confidence 344 489886 3467787643
No 267
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=94.45 E-value=0.26 Score=29.46 Aligned_cols=42 Identities=17% Similarity=0.222 Sum_probs=29.1
Q ss_pred cCCCEEEEEecCCCEEEEEEcCCCCCcceeEeecCCCCCCceEEC
Q 018242 210 EDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRS 254 (359)
Q Consensus 210 ~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~d 254 (359)
||+++||+++...+.|..+|.... ........+..|.+++++
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~---~~~~~i~vg~~P~~i~~~ 42 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATN---KVIATIPVGGYPFGVAVS 42 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCC---eEEEEEECCCCCceEEeC
Confidence 578899999999999999987432 121122245568888764
No 268
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=94.42 E-value=3.3 Score=36.56 Aligned_cols=197 Identities=15% Similarity=0.151 Sum_probs=108.6
Q ss_pred CEEEEeeCCCCCCceEEEcc-CCCeeEEecCCCEEEEEEcCCc-ceEEEeecCCCCCCCCCCcccccccccccCCcceEE
Q 018242 24 GVVQYQIEGAIGPESLAFDA-LGEGPYTGVSDGRIIKWHQDQR-RWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGL 101 (359)
Q Consensus 24 ~~~~~~~~~~~~p~~i~~~~-~G~~l~~~~~~~~i~~~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi 101 (359)
....++.+.-..-..++|+| ...++.+++.++.|..|+.... .... . ......+.+..+
T Consensus 18 kd~ev~~pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~-------------k------a~~~~~~PvL~v 78 (347)
T KOG0647|consen 18 KDYEVPNPPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVP-------------K------AQQSHDGPVLDV 78 (347)
T ss_pred cceecCCCcccchheeEeccccCceEEecccCCceEEEEEecCCcccc-------------h------hhhccCCCeEEE
Confidence 34566666666777999999 4554558899999999987653 1110 0 122333446788
Q ss_pred EEecCCCeEEEEeCCCcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCE-EEEEeCCCccccccceeeeeecCCC
Q 018242 102 CFNKTNGDLYIADAYFGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGI-IYFTDSSSQFQRRNHISVILSGDKT 180 (359)
Q Consensus 102 ~~~~~~g~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~-l~v~d~~~~~~~~~~~~~~~~~~~~ 180 (359)
+++.++..+|.+...+.+-.+|+.++++..+..... + +..+.+-+..++ +.++ ++++
T Consensus 79 ~WsddgskVf~g~~Dk~~k~wDL~S~Q~~~v~~Hd~--p---vkt~~wv~~~~~~cl~T-----------------GSWD 136 (347)
T KOG0647|consen 79 CWSDDGSKVFSGGCDKQAKLWDLASGQVSQVAAHDA--P---VKTCHWVPGMNYQCLVT-----------------GSWD 136 (347)
T ss_pred EEccCCceEEeeccCCceEEEEccCCCeeeeeeccc--c---eeEEEEecCCCcceeEe-----------------cccc
Confidence 898867778888766678899999998877654221 1 122333222221 2233 2445
Q ss_pred ceEEEEeCCCCcEEEEeCCCCCCc-eEEEccCCCEEEEEecCCCEEEEEEcCCCCCcceeEee-cCCCCCCce--EECCC
Q 018242 181 GRLMKYDPATKQVTVLLGNLSFPN-GVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVA-QLPGFPDNI--KRSPR 256 (359)
Q Consensus 181 g~v~~~d~~~~~~~~~~~~~~~p~-gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~-~~~~~p~~i--~~d~~ 256 (359)
-.|-.||+....... ...-|. -.+.+...- +.+..+.+..|.+|++..+.. .++... .+.-..+.+ +.|.+
T Consensus 137 KTlKfWD~R~~~pv~---t~~LPeRvYa~Dv~~p-m~vVata~r~i~vynL~n~~t-e~k~~~SpLk~Q~R~va~f~d~~ 211 (347)
T KOG0647|consen 137 KTLKFWDTRSSNPVA---TLQLPERVYAADVLYP-MAVVATAERHIAVYNLENPPT-EFKRIESPLKWQTRCVACFQDKD 211 (347)
T ss_pred cceeecccCCCCeee---eeeccceeeehhccCc-eeEEEecCCcEEEEEcCCCcc-hhhhhcCcccceeeEEEEEecCC
Confidence 567778875322211 112232 223333222 556666778899999865421 111111 111123344 44666
Q ss_pred CCEEEEEecCC
Q 018242 257 GGFWVGIHSRR 267 (359)
Q Consensus 257 G~lwv~~~~~~ 267 (359)
|. -++...++
T Consensus 212 ~~-alGsiEGr 221 (347)
T KOG0647|consen 212 GF-ALGSIEGR 221 (347)
T ss_pred ce-Eeeeecce
Confidence 64 55666655
No 269
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=94.33 E-value=1.3 Score=39.47 Aligned_cols=140 Identities=11% Similarity=0.041 Sum_probs=74.0
Q ss_pred eEEEccCCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEEeCCC
Q 018242 38 SLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIADAYF 117 (359)
Q Consensus 38 ~i~~~~~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~~~~~ 117 (359)
--.++|+|+ +.++..+-++..-|.++-+..+. -.-......|....+.-.+..+...+
T Consensus 13 ~c~fSp~g~-yiAs~~~yrlviRd~~tlq~~ql---------------------f~cldki~yieW~ads~~ilC~~yk~ 70 (447)
T KOG4497|consen 13 FCSFSPCGN-YIASLSRYRLVIRDSETLQLHQL---------------------FLCLDKIVYIEWKADSCHILCVAYKD 70 (447)
T ss_pred ceeECCCCC-eeeeeeeeEEEEeccchhhHHHH---------------------HHHHHHhhheeeeccceeeeeeeecc
Confidence 346889999 66666666777766655422110 00001122344444222222222233
Q ss_pred -cEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCCcEEEE
Q 018242 118 -GLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQVTVL 196 (359)
Q Consensus 118 -~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~ 196 (359)
.|..++...-+..--.+ .+ ......+.++|+||++..+. ....+|-++...+.+...+
T Consensus 71 ~~vqvwsl~Qpew~ckId--eg--~agls~~~WSPdgrhiL~ts-----------------eF~lriTVWSL~t~~~~~~ 129 (447)
T KOG4497|consen 71 PKVQVWSLVQPEWYCKID--EG--QAGLSSISWSPDGRHILLTS-----------------EFDLRITVWSLNTQKGYLL 129 (447)
T ss_pred ceEEEEEeecceeEEEec--cC--CCcceeeeECCCcceEeeee-----------------cceeEEEEEEeccceeEEe
Confidence 36666665443322111 11 12456789999998777662 2233555566555555444
Q ss_pred eCCCCCCceEEEccCCCEEEEEec
Q 018242 197 LGNLSFPNGVALSEDGNYILLAET 220 (359)
Q Consensus 197 ~~~~~~p~gia~~~d~~~l~v~~~ 220 (359)
........|++|.+||+..-+...
T Consensus 130 ~~pK~~~kg~~f~~dg~f~ai~sR 153 (447)
T KOG4497|consen 130 PHPKTNVKGYAFHPDGQFCAILSR 153 (447)
T ss_pred cccccCceeEEECCCCceeeeeec
Confidence 433344589999999986555543
No 270
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.22 E-value=0.86 Score=41.41 Aligned_cols=99 Identities=10% Similarity=0.005 Sum_probs=62.8
Q ss_pred eEEEccC--CCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEEeC
Q 018242 38 SLAFDAL--GEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIADA 115 (359)
Q Consensus 38 ~i~~~~~--G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~~~ 115 (359)
++.|-+. ...+.+.+..+.+..||+..+ .+.+. .+.........+...++.+.+|+++.
T Consensus 207 di~Fl~g~~~~~fat~T~~hqvR~YDt~~q-RRPV~------------------~fd~~E~~is~~~l~p~gn~Iy~gn~ 267 (412)
T KOG3881|consen 207 DIRFLEGSPNYKFATITRYHQVRLYDTRHQ-RRPVA------------------QFDFLENPISSTGLTPSGNFIYTGNT 267 (412)
T ss_pred cceecCCCCCceEEEEecceeEEEecCccc-Cccee------------------EeccccCcceeeeecCCCcEEEEecc
Confidence 4444444 454667788899999998754 22221 33333334467778886777888887
Q ss_pred CCcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEE
Q 018242 116 YFGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFT 159 (359)
Q Consensus 116 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~ 159 (359)
.+.+..||..++++.-. ...+ --..+.+|..+|.+. +..+
T Consensus 268 ~g~l~~FD~r~~kl~g~--~~kg-~tGsirsih~hp~~~-~las 307 (412)
T KOG3881|consen 268 KGQLAKFDLRGGKLLGC--GLKG-ITGSIRSIHCHPTHP-VLAS 307 (412)
T ss_pred cchhheecccCceeecc--ccCC-ccCCcceEEEcCCCc-eEEe
Confidence 77799999988864321 1111 123678899999988 4433
No 271
>PHA03098 kelch-like protein; Provisional
Probab=94.15 E-value=4.6 Score=39.64 Aligned_cols=140 Identities=15% Similarity=0.142 Sum_probs=69.8
Q ss_pred CEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEEeCC-------CcEEEEeCCCC
Q 018242 55 GRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIADAY-------FGLLKVGPEGG 127 (359)
Q Consensus 55 ~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~~~~-------~~i~~~~~~~~ 127 (359)
..+.+||+.+++|+..+..+ .....+..+.. ++++|+.... +.+.+||+.++
T Consensus 358 ~~v~~yd~~~~~W~~~~~lp-------------------~~r~~~~~~~~--~~~iYv~GG~~~~~~~~~~v~~yd~~t~ 416 (534)
T PHA03098 358 NTVESWKPGESKWREEPPLI-------------------FPRYNPCVVNV--NNLIYVIGGISKNDELLKTVECFSLNTN 416 (534)
T ss_pred ceEEEEcCCCCceeeCCCcC-------------------cCCccceEEEE--CCEEEEECCcCCCCcccceEEEEeCCCC
Confidence 35778899888777543111 01111223322 7888886431 24889999998
Q ss_pred eEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCCcEEEEeCCCCCCc---
Q 018242 128 LATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQVTVLLGNLSFPN--- 204 (359)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~p~--- 204 (359)
+++.+... +. +. .-.. ++.-+++ ||+.-.... .. .......+++||+.+++...+. ....|.
T Consensus 417 ~W~~~~~~-p~-~r-~~~~-~~~~~~~-iyv~GG~~~-~~--------~~~~~~~v~~yd~~~~~W~~~~-~~~~~r~~~ 481 (534)
T PHA03098 417 KWSKGSPL-PI-SH-YGGC-AIYHDGK-IYVIGGISY-ID--------NIKVYNIVESYNPVTNKWTELS-SLNFPRINA 481 (534)
T ss_pred eeeecCCC-Cc-cc-cCce-EEEECCE-EEEECCccC-CC--------CCcccceEEEecCCCCceeeCC-CCCcccccc
Confidence 88764321 11 11 1112 2333566 888721100 00 0001234899999988776543 222221
Q ss_pred eEEEccCCCEEEEEecCC-----CEEEEEEcCC
Q 018242 205 GVALSEDGNYILLAETTS-----CRILRYWLKT 232 (359)
Q Consensus 205 gia~~~d~~~l~v~~~~~-----~~i~~~~~~~ 232 (359)
+.+. .+++ +|+.+-.+ +.+++||...
T Consensus 482 ~~~~-~~~~-iyv~GG~~~~~~~~~v~~yd~~~ 512 (534)
T PHA03098 482 SLCI-FNNK-IYVVGGDKYEYYINEIEVYDDKT 512 (534)
T ss_pred eEEE-ECCE-EEEEcCCcCCcccceeEEEeCCC
Confidence 2222 2443 66665332 4566676543
No 272
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=94.12 E-value=5.2 Score=37.60 Aligned_cols=83 Identities=7% Similarity=-0.105 Sum_probs=39.9
Q ss_pred CceEEEEeCCCCcE-EEEe-CCCCCCceEEEccCCCEEEEEecCCCEEEEEEcCCCCCcceeEeecC--C---CCCCceE
Q 018242 180 TGRLMKYDPATKQV-TVLL-GNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQL--P---GFPDNIK 252 (359)
Q Consensus 180 ~g~v~~~d~~~~~~-~~~~-~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~--~---~~p~~i~ 252 (359)
.|.+++-...++.. +.+. .......++.+.+++. ++++. ..+.+++-+-.+ ..-....+.+. + ..+.++.
T Consensus 258 ~G~~~~s~d~G~~~W~~~~~~~~~~l~~v~~~~dg~-l~l~g-~~G~l~~S~d~G-~~~~~~~f~~~~~~~~~~~l~~v~ 334 (398)
T PLN00033 258 RGNFYLTWEPGQPYWQPHNRASARRIQNMGWRADGG-LWLLT-RGGGLYVSKGTG-LTEEDFDFEEADIKSRGFGILDVG 334 (398)
T ss_pred CccEEEecCCCCcceEEecCCCccceeeeeEcCCCC-EEEEe-CCceEEEecCCC-CcccccceeecccCCCCcceEEEE
Confidence 34566644443332 3332 2223346777888876 55554 345565543221 11000122221 1 1234567
Q ss_pred ECCCCCEEEEEec
Q 018242 253 RSPRGGFWVGIHS 265 (359)
Q Consensus 253 ~d~~G~lwv~~~~ 265 (359)
+.+++.+|++...
T Consensus 335 ~~~d~~~~a~G~~ 347 (398)
T PLN00033 335 YRSKKEAWAAGGS 347 (398)
T ss_pred EcCCCcEEEEECC
Confidence 7778889987764
No 273
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=94.06 E-value=1.2 Score=43.25 Aligned_cols=155 Identities=15% Similarity=0.082 Sum_probs=84.3
Q ss_pred CCCCCCceEEEccCCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeE
Q 018242 31 EGAIGPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDL 110 (359)
Q Consensus 31 ~~~~~p~~i~~~~~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l 110 (359)
+...+-++++..+.|.++..+.-.+-|..||+.+.+. +..+.....+..-+.+++ +|+-
T Consensus 169 G~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~k--------------------imkLrGHTdNVr~ll~~d-DGt~ 227 (735)
T KOG0308|consen 169 GPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKK--------------------IMKLRGHTDNVRVLLVND-DGTR 227 (735)
T ss_pred CCccceeeeecCCcceEEEecCcccceEEeccccccc--------------------eeeeeccccceEEEEEcC-CCCe
Confidence 3344556888888887555566668899999998631 113333334566788887 6655
Q ss_pred EEEeCCCc-EEEEeCCCCeEE-EEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeC
Q 018242 111 YIADAYFG-LLKVGPEGGLAT-AVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDP 188 (359)
Q Consensus 111 ~v~~~~~~-i~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~ 188 (359)
.++...+| |..+|....+-. .+.- ....+..+..+++=.++|.+ ++.+.|++-|.
T Consensus 228 ~ls~sSDgtIrlWdLgqQrCl~T~~v-----H~e~VWaL~~~~sf~~vYsG------------------~rd~~i~~Tdl 284 (735)
T KOG0308|consen 228 LLSASSDGTIRLWDLGQQRCLATYIV-----HKEGVWALQSSPSFTHVYSG------------------GRDGNIYRTDL 284 (735)
T ss_pred EeecCCCceEEeeeccccceeeeEEe-----ccCceEEEeeCCCcceEEec------------------CCCCcEEeccc
Confidence 55444444 667777543211 1111 11124445555444435554 55677888776
Q ss_pred CCC-cEEEEeCCCCCCceEEEccCCCEEEEEecCCCEEEEEEc
Q 018242 189 ATK-QVTVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWL 230 (359)
Q Consensus 189 ~~~-~~~~~~~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~ 230 (359)
.+- +...+-..-.....+.+..+.+.. |..+.+..|.+|..
T Consensus 285 ~n~~~~tlick~daPv~~l~~~~~~~~~-WvtTtds~I~rW~~ 326 (735)
T KOG0308|consen 285 RNPAKSTLICKEDAPVLKLHLHEHDNSV-WVTTTDSSIKRWKL 326 (735)
T ss_pred CCchhheEeecCCCchhhhhhccccCCc-eeeeccccceecCC
Confidence 542 222222221222344444333334 55567778888864
No 274
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=93.96 E-value=4.7 Score=36.57 Aligned_cols=133 Identities=18% Similarity=0.174 Sum_probs=71.0
Q ss_pred ceEEEEeCCCCcEEE-EeCCCCCCce-EEEccCCCEEEEE---ecCCCEEEEEEcCCCCCcceeEeecCCCCCCceEECC
Q 018242 181 GRLMKYDPATKQVTV-LLGNLSFPNG-VALSEDGNYILLA---ETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSP 255 (359)
Q Consensus 181 g~v~~~d~~~~~~~~-~~~~~~~p~g-ia~~~d~~~l~v~---~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~ 255 (359)
..||.||.++-++.. +......|.| +|+++....-|++ .+..+.|..||...- .....+....+-...+++++
T Consensus 106 e~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl--~~v~~I~aH~~~lAalafs~ 183 (391)
T KOG2110|consen 106 ESIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINL--QPVNTINAHKGPLAALAFSP 183 (391)
T ss_pred ccEEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEcccc--eeeeEEEecCCceeEEEECC
Confidence 369999987533321 2222244554 4566554323333 344578999986432 22222221223345699999
Q ss_pred CCCEEEEEecCCCccccccccCC-ccceeeecCCcc--ceeeeeecccccCcceEEEEECCCCCEEEEEE
Q 018242 256 RGGFWVGIHSRRKGISKLVLSFP-WIGNVLIKLPID--IVKIHSSLVKLSGNGGMAMRISEQGNVLEILE 322 (359)
Q Consensus 256 ~G~lwv~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 322 (359)
+|.+.++....|.. |.+|. ++|+.+..+--+ ...+.+++|..+.+ .+....+...++.|.
T Consensus 184 ~G~llATASeKGTV----IRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~---~L~~sS~TeTVHiFK 246 (391)
T KOG2110|consen 184 DGTLLATASEKGTV----IRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQ---FLAASSNTETVHIFK 246 (391)
T ss_pred CCCEEEEeccCceE----EEEEEcCCccEeeeeeCCceeeEEEEEEECCCCC---eEEEecCCCeEEEEE
Confidence 99999988887764 55553 677776655332 22344444444332 333333444455543
No 275
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=93.93 E-value=5.2 Score=36.94 Aligned_cols=94 Identities=20% Similarity=0.260 Sum_probs=57.6
Q ss_pred CCeEEEEeCCC---cEEEEeCCCCeEEEEeecCCCcccccc-ceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCce
Q 018242 107 NGDLYIADAYF---GLLKVGPEGGLATAVATQSEGIPFRFC-NSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGR 182 (359)
Q Consensus 107 ~g~l~v~~~~~---~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~ 182 (359)
+.-+|+.. .. .|+.++..++..+.+-. + .. .+ .-+.+|++++.||++-... ....-.
T Consensus 248 ~~~l~~s~-~~G~~hly~~~~~~~~~~~lT~---G-~~-~V~~i~~~d~~~~~iyf~a~~~-------------~p~~r~ 308 (353)
T PF00930_consen 248 NEFLWISE-RDGYRHLYLYDLDGGKPRQLTS---G-DW-EVTSILGWDEDNNRIYFTANGD-------------NPGERH 308 (353)
T ss_dssp SEEEEEEE-TTSSEEEEEEETTSSEEEESS----S-SS--EEEEEEEECTSSEEEEEESSG-------------GTTSBE
T ss_pred CEEEEEEE-cCCCcEEEEEcccccceecccc---C-ce-eecccceEcCCCCEEEEEecCC-------------CCCceE
Confidence 34466665 43 49999999887654321 1 11 22 2467888888799884431 122347
Q ss_pred EEEEeCC-CCcEEEEeCCCCCCc-eEEEccCCCEEEEEec
Q 018242 183 LMKYDPA-TKQVTVLLGNLSFPN-GVALSEDGNYILLAET 220 (359)
Q Consensus 183 v~~~d~~-~~~~~~~~~~~~~p~-gia~~~d~~~l~v~~~ 220 (359)
||+++.+ ++..+.+. ...... .+.|+|+++++....+
T Consensus 309 lY~v~~~~~~~~~~LT-~~~~~~~~~~~Spdg~y~v~~~s 347 (353)
T PF00930_consen 309 LYRVSLDSGGEPKCLT-CEDGDHYSASFSPDGKYYVDTYS 347 (353)
T ss_dssp EEEEETTETTEEEESS-TTSSTTEEEEE-TTSSEEEEEEE
T ss_pred EEEEEeCCCCCeEecc-CCCCCceEEEECCCCCEEEEEEc
Confidence 9999998 77776553 333344 8999999986555443
No 276
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=93.88 E-value=3.5 Score=37.03 Aligned_cols=188 Identities=10% Similarity=-0.006 Sum_probs=99.8
Q ss_pred CeeEEecCCCEEEEEEcCCcc-eEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecC--CCeEEEEeCCCcEEEE
Q 018242 46 EGPYTGVSDGRIIKWHQDQRR-WLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKT--NGDLYIADAYFGLLKV 122 (359)
Q Consensus 46 ~~l~~~~~~~~i~~~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~--~g~l~v~~~~~~i~~~ 122 (359)
.++.++..+|.|..||+.+++ ...|. .......++.|... -+.++.+...+.|..+
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk---------------------~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~w 99 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFK---------------------GPPATTNGVRFISCDSPHGVISCSSDGTVRLW 99 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheec---------------------CCCCcccceEEecCCCCCeeEEeccCCeEEEE
Confidence 448888999999999999853 22222 22222346666542 3456666555557788
Q ss_pred eCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCCcE--EEE-eCC
Q 018242 123 GPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQV--TVL-LGN 199 (359)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~--~~~-~~~ 199 (359)
|.....-..... ....+......+....+++ +.-+.... ..-...|+.||....+. ..+ ..+
T Consensus 100 D~Rs~~e~a~~~-~~~~~~~~f~~ld~nck~~-ii~~GtE~-------------~~s~A~v~lwDvR~~qq~l~~~~eSH 164 (376)
T KOG1188|consen 100 DIRSQAESARIS-WTQQSGTPFICLDLNCKKN-IIACGTEL-------------TRSDASVVLWDVRSEQQLLRQLNESH 164 (376)
T ss_pred Eeecchhhhhee-ccCCCCCcceEeeccCcCC-eEEecccc-------------ccCceEEEEEEeccccchhhhhhhhc
Confidence 876543221111 1111111112233334666 66653210 01123577888753221 111 112
Q ss_pred CCCCceEEEccCCCEEEEEecCCCEEEEEEcCCCCCcc-eeEeecCCCCCCceEECCCC--CEEEEEecCCCc
Q 018242 200 LSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGT-IEIVAQLPGFPDNIKRSPRG--GFWVGIHSRRKG 269 (359)
Q Consensus 200 ~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~p~~i~~d~~G--~lwv~~~~~~~~ 269 (359)
..-...+.|.|..-.++++.+.++-+-.||++.+.-.+ .....+......-+.+-.++ +||.-++.....
T Consensus 165 ~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~ 237 (376)
T KOG1188|consen 165 NDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFA 237 (376)
T ss_pred cCcceeEEecCCCCCeEEeecccceEEeeecCCCcchhhHHHhhcccceeeeeeeecCCcceEEEEEccCcee
Confidence 22345778888766699999999999999986542111 11111111223446666667 799888776643
No 277
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=93.79 E-value=4.3 Score=35.54 Aligned_cols=42 Identities=17% Similarity=0.090 Sum_probs=31.5
Q ss_pred eeCCCCCCc--eEEEccCCCeeEEecCCCEEEEEEcCCcceEEE
Q 018242 29 QIEGAIGPE--SLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHF 70 (359)
Q Consensus 29 ~~~~~~~p~--~i~~~~~G~~l~~~~~~~~i~~~d~~~~~~~~~ 70 (359)
.+++=..|+ -++++||+.++..+...|.|..+|..+.+...+
T Consensus 37 qVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~lf~I 80 (282)
T PF15492_consen 37 QVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGSELFVI 80 (282)
T ss_pred ecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEecccceeEEc
Confidence 333334554 899999999888888999999999987644433
No 278
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=93.70 E-value=0.38 Score=46.44 Aligned_cols=157 Identities=15% Similarity=0.076 Sum_probs=84.6
Q ss_pred eEEEcc-CCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEE-EeC
Q 018242 38 SLAFDA-LGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYI-ADA 115 (359)
Q Consensus 38 ~i~~~~-~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v-~~~ 115 (359)
++.+|| |..+|.+++.+|.|..|....+.... ..+-|.+ .+.........+.|.|--.++.. +.+
T Consensus 632 Dl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e---------~~~tPe~----~lt~h~eKI~slRfHPLAadvLa~asy 698 (1012)
T KOG1445|consen 632 DLHWDPFDDERLAVATDDGQINLWRLTANGLPE---------NEMTPEK----ILTIHGEKITSLRFHPLAADVLAVASY 698 (1012)
T ss_pred ecccCCCChHHeeecccCceEEEEEeccCCCCc---------ccCCcce----eeecccceEEEEEecchhhhHhhhhhc
Confidence 344555 33348888888988888776542111 0111211 22222233456667664444433 333
Q ss_pred CCcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCCcEEE
Q 018242 116 YFGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQVTV 195 (359)
Q Consensus 116 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~ 195 (359)
...|..+|..+.+..... .+ .-..+.+++++|+|+ ...+. -..|+|.+|+|.+++...
T Consensus 699 d~Ti~lWDl~~~~~~~~l---~g-HtdqIf~~AWSpdGr-~~AtV-----------------cKDg~~rVy~Prs~e~pv 756 (1012)
T KOG1445|consen 699 DSTIELWDLANAKLYSRL---VG-HTDQIFGIAWSPDGR-RIATV-----------------CKDGTLRVYEPRSREQPV 756 (1012)
T ss_pred cceeeeeehhhhhhhhee---cc-CcCceeEEEECCCCc-ceeee-----------------ecCceEEEeCCCCCCCcc
Confidence 445777887765532111 11 113567899999999 55542 246789999998655443
Q ss_pred EeCCC-CC--CceEEEccCCCEEEEEecCC---CEEEEEE
Q 018242 196 LLGNL-SF--PNGVALSEDGNYILLAETTS---CRILRYW 229 (359)
Q Consensus 196 ~~~~~-~~--p~gia~~~d~~~l~v~~~~~---~~i~~~~ 229 (359)
..... .. ..-|.+.-||+.+++++.+. .+|..|+
T Consensus 757 ~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~ 796 (1012)
T KOG1445|consen 757 YEGKGPVGTRGARILWACDGRIVIVVGFDKSSERQVQMYD 796 (1012)
T ss_pred ccCCCCccCcceeEEEEecCcEEEEecccccchhhhhhhh
Confidence 32211 11 12355556777777766553 2344454
No 279
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=93.60 E-value=4.2 Score=39.87 Aligned_cols=154 Identities=12% Similarity=0.046 Sum_probs=87.1
Q ss_pred CCceEEEccCCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCc-ceEEEEecC-----CC
Q 018242 35 GPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGR-PLGLCFNKT-----NG 108 (359)
Q Consensus 35 ~p~~i~~~~~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-p~gi~~~~~-----~g 108 (359)
+--+-++..||.++..+..+|.|..-|..+.+-..+. +| ...+. ..++++.|. +.
T Consensus 134 R~~~CsWtnDGqylalG~~nGTIsiRNk~gEek~~I~----------Rp---------gg~Nspiwsi~~~p~sg~G~~d 194 (1081)
T KOG1538|consen 134 RIICCSWTNDGQYLALGMFNGTISIRNKNGEEKVKIE----------RP---------GGSNSPIWSICWNPSSGEGRND 194 (1081)
T ss_pred eEEEeeecCCCcEEEEeccCceEEeecCCCCcceEEe----------CC---------CCCCCCceEEEecCCCCCCccc
Confidence 4457789999998888999999988776654322221 11 11122 367777764 23
Q ss_pred eEEEEeCCCcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeC
Q 018242 109 DLYIADAYFGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDP 188 (359)
Q Consensus 109 ~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~ 188 (359)
.+-|.++...+..+..++.... ...... -.|.-+..=++|.++.++- -++.+..|..
T Consensus 195 i~aV~DW~qTLSFy~LsG~~Ig----k~r~L~-FdP~CisYf~NGEy~LiGG------------------sdk~L~~fTR 251 (1081)
T KOG1538|consen 195 ILAVADWGQTLSFYQLSGKQIG----KDRALN-FDPCCISYFTNGEYILLGG------------------SDKQLSLFTR 251 (1081)
T ss_pred eEEEEeccceeEEEEecceeec----ccccCC-CCchhheeccCCcEEEEcc------------------CCCceEEEee
Confidence 4666777766777776654321 111111 1344555667888676662 2334555554
Q ss_pred CCCcEEEEeCCCCCCceEEEccCCCEEEEEecCCCEEEEEEcC
Q 018242 189 ATKQVTVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLK 231 (359)
Q Consensus 189 ~~~~~~~~~~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~ 231 (359)
++-.+-++..-......++.-|+++ -|+.+-.+++|..|++.
T Consensus 252 ~GvrLGTvg~~D~WIWtV~~~PNsQ-~v~~GCqDGTiACyNl~ 293 (1081)
T KOG1538|consen 252 DGVRLGTVGEQDSWIWTVQAKPNSQ-YVVVGCQDGTIACYNLI 293 (1081)
T ss_pred cCeEEeeccccceeEEEEEEccCCc-eEEEEEccCeeehhhhH
Confidence 4322222211112345667777777 46666677888888753
No 280
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=93.59 E-value=4.9 Score=39.60 Aligned_cols=103 Identities=17% Similarity=0.088 Sum_probs=58.4
Q ss_pred EEccCCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEEeCCCc-
Q 018242 40 AFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIADAYFG- 118 (359)
Q Consensus 40 ~~~~~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~~~~~~- 118 (359)
++|..+..+-+++..|.+|.++..+++..... .....+.-.-+.+++ ...+.++...+|
T Consensus 40 c~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~-------------------~~~~~~~~~~~~vs~-~e~lvAagt~~g~ 99 (726)
T KOG3621|consen 40 CVDATEEYLAMGSSAGSVYLYNRHTGEMRKLK-------------------NEGATGITCVRSVSS-VEYLVAAGTASGR 99 (726)
T ss_pred EeecCCceEEEecccceEEEEecCchhhhccc-------------------ccCccceEEEEEecc-hhHhhhhhcCCce
Confidence 46677777778888899999998877433221 000111122344666 555555544444
Q ss_pred EEEEeCCCCeEEE--EeecCCCccccccceEEEeCCCCEEEEEeCC
Q 018242 119 LLKVGPEGGLATA--VATQSEGIPFRFCNSLDIDQSTGIIYFTDSS 162 (359)
Q Consensus 119 i~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~ 162 (359)
|..+....+.... +..+........+..+.|+++|.++|.+|+.
T Consensus 100 V~v~ql~~~~p~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~ 145 (726)
T KOG3621|consen 100 VSVFQLNKELPRDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQ 145 (726)
T ss_pred EEeehhhccCCCcceeeccccccCCceEEEEEecccccEEeecCCC
Confidence 5555443322111 1122222123567889999999999999753
No 281
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=93.59 E-value=3.8 Score=40.52 Aligned_cols=220 Identities=10% Similarity=0.103 Sum_probs=108.0
Q ss_pred CCCCCceEEEccCCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecC--CCe
Q 018242 32 GAIGPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKT--NGD 109 (359)
Q Consensus 32 ~~~~p~~i~~~~~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~--~g~ 109 (359)
.-.+-.+++++|+|.-|..+...|.|..+++..-+...+ ++....+...+.++.. ...
T Consensus 458 ~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~--------------------~eAHesEilcLeyS~p~~~~k 517 (1080)
T KOG1408|consen 458 SRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCF--------------------MEAHESEILCLEYSFPVLTNK 517 (1080)
T ss_pred cccceEEEEECCCcceecccCccCceEEEEehhhhhhhh--------------------eecccceeEEEeecCchhhhH
Confidence 345778999999999777777778999999876432221 2222233344444421 234
Q ss_pred EEEEeCCCc-EEEEeCCCCeEEEEeecCCCccccccceEEEeCCC-CEEEEEeCCCccccccceeeeeecCCCceEEEEe
Q 018242 110 LYIADAYFG-LLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQST-GIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYD 187 (359)
Q Consensus 110 l~v~~~~~~-i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g-~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d 187 (359)
|..+...++ |..||...... +.....+ ....+..+.+...| ++-.++-. ....-.++..
T Consensus 518 LLASasrdRlIHV~Dv~rny~--l~qtld~-HSssITsvKFa~~gln~~MiscG----------------ADksimFr~~ 578 (1080)
T KOG1408|consen 518 LLASASRDRLIHVYDVKRNYD--LVQTLDG-HSSSITSVKFACNGLNRKMISCG----------------ADKSIMFRVN 578 (1080)
T ss_pred hhhhccCCceEEEEecccccc--hhhhhcc-cccceeEEEEeecCCceEEEecc----------------Cchhhheehh
Confidence 444433333 66777653321 1111111 12244455555444 21233310 0001111111
Q ss_pred CCCCcEEEEeC---C--CCCCceEEEccCCCEEEEEecCCCEEEEEEcCCCCCcceeEeecC---CCCCCceEECCCCCE
Q 018242 188 PATKQVTVLLG---N--LSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQL---PGFPDNIKRSPRGGF 259 (359)
Q Consensus 188 ~~~~~~~~~~~---~--~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~---~~~p~~i~~d~~G~l 259 (359)
.+.+....+.. . -..-..++.+|.-+ +.++.-.+..|..|++...+. .+.|... .|-+--+..||.| +
T Consensus 579 qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k-~v~t~cQDrnirif~i~sgKq--~k~FKgs~~~eG~lIKv~lDPSg-i 654 (1080)
T KOG1408|consen 579 QKASSGRLFPRHTQTLSKTTLYDMAVDPTSK-LVVTVCQDRNIRIFDIESGKQ--VKSFKGSRDHEGDLIKVILDPSG-I 654 (1080)
T ss_pred ccccCceeccccccccccceEEEeeeCCCcc-eEEEEecccceEEEeccccce--eeeecccccCCCceEEEEECCCc-c
Confidence 11111111110 0 01235677888776 445555666799999876533 3445442 2334447789999 5
Q ss_pred EEEEecCCCccccccccCCc-cceeeecCCccceeeeeec
Q 018242 260 WVGIHSRRKGISKLVLSFPW-IGNVLIKLPIDIVKIHSSL 298 (359)
Q Consensus 260 wv~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~ 298 (359)
|+++.-..+. +.+++. .|+..++.-.+.+.++.+-
T Consensus 655 Y~atScsdkt----l~~~Df~sgEcvA~m~GHsE~VTG~k 690 (1080)
T KOG1408|consen 655 YLATSCSDKT----LCFVDFVSGECVAQMTGHSEAVTGVK 690 (1080)
T ss_pred EEEEeecCCc----eEEEEeccchhhhhhcCcchheeeee
Confidence 5544433332 455553 6777776655555544433
No 282
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=93.56 E-value=2.8 Score=42.73 Aligned_cols=103 Identities=19% Similarity=0.228 Sum_probs=64.1
Q ss_pred CCeEEEEeCCCcEEEEeCCCCeEEEEeecC-CCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEE
Q 018242 107 NGDLYIADAYFGLLKVGPEGGLATAVATQS-EGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMK 185 (359)
Q Consensus 107 ~g~l~v~~~~~~i~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~ 185 (359)
....|++-..++|+++|+.-..-+.+.... .-........++.+.+|. |-|+ +..|.|-.
T Consensus 542 ~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~Fs~~aTt~~G~-iavg------------------s~~G~IRL 602 (794)
T PF08553_consen 542 NEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNFSCFATTEDGY-IAVG------------------SNKGDIRL 602 (794)
T ss_pred CCceEEEECCCceEEeccCCCCCceeeccccccccCCCceEEEecCCce-EEEE------------------eCCCcEEe
Confidence 345778877788999998642211111111 111223456778889998 8887 34577888
Q ss_pred EeCCCCcEEEEeCCCCCC-ceEEEccCCCEEEEEecCCCEEEEEEc
Q 018242 186 YDPATKQVTVLLGNLSFP-NGVALSEDGNYILLAETTSCRILRYWL 230 (359)
Q Consensus 186 ~d~~~~~~~~~~~~~~~p-~gia~~~d~~~l~v~~~~~~~i~~~~~ 230 (359)
||.-+.+.++..+++..| .+|..+.||++++.+ ....|..++.
T Consensus 603 yd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaT--c~tyLlLi~t 646 (794)
T PF08553_consen 603 YDRLGKRAKTALPGLGDPIIGIDVTADGKWILAT--CKTYLLLIDT 646 (794)
T ss_pred ecccchhhhhcCCCCCCCeeEEEecCCCcEEEEe--ecceEEEEEE
Confidence 886654444555554434 689999999865554 4567777775
No 283
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=93.44 E-value=0.51 Score=45.59 Aligned_cols=148 Identities=13% Similarity=0.057 Sum_probs=83.3
Q ss_pred eEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEEeCC-CcEEEEeCCC
Q 018242 48 PYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIADAY-FGLLKVGPEG 126 (359)
Q Consensus 48 l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~~~~-~~i~~~~~~~ 126 (359)
|.++.++-.|-.||..+.+... .+........++++++ +|+...+.-. +.|..|.+..
T Consensus 693 La~asyd~Ti~lWDl~~~~~~~--------------------~l~gHtdqIf~~AWSp-dGr~~AtVcKDg~~rVy~Prs 751 (1012)
T KOG1445|consen 693 LAVASYDSTIELWDLANAKLYS--------------------RLVGHTDQIFGIAWSP-DGRRIATVCKDGTLRVYEPRS 751 (1012)
T ss_pred hhhhhccceeeeeehhhhhhhh--------------------eeccCcCceeEEEECC-CCcceeeeecCceEEEeCCCC
Confidence 4556677888888887652111 2333445577999999 6665554333 4588888877
Q ss_pred CeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCCcEEEEe----CCCCC
Q 018242 127 GLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQVTVLL----GNLSF 202 (359)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~----~~~~~ 202 (359)
++- .+... .+.....-..|.+.-||+.+.++-.... + .-.|..||.++-....+. .....
T Consensus 752 ~e~-pv~Eg-~gpvgtRgARi~wacdgr~viv~Gfdk~-------------S-eRQv~~Y~Aq~l~~~pl~t~~lDvaps 815 (1012)
T KOG1445|consen 752 REQ-PVYEG-KGPVGTRGARILWACDGRIVIVVGFDKS-------------S-ERQVQMYDAQTLDLRPLYTQVLDVAPS 815 (1012)
T ss_pred CCC-ccccC-CCCccCcceeEEEEecCcEEEEeccccc-------------c-hhhhhhhhhhhccCCcceeeeecccCc
Confidence 653 33221 1111123345788888884444421110 0 113555665432222111 11122
Q ss_pred CceEEEccCCCEEEEEecCCCEEEEEEcCC
Q 018242 203 PNGVALSEDGNYILLAETTSCRILRYWLKT 232 (359)
Q Consensus 203 p~gia~~~d~~~l~v~~~~~~~i~~~~~~~ 232 (359)
|---.+++|.+.|++++..+..|+.|.+-.
T Consensus 816 ~LvP~YD~Ds~~lfltGKGD~~v~~yEv~~ 845 (1012)
T KOG1445|consen 816 PLVPHYDYDSNVLFLTGKGDRFVNMYEVIY 845 (1012)
T ss_pred cccccccCCCceEEEecCCCceEEEEEecC
Confidence 223356789999999999999999998754
No 284
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=93.27 E-value=6 Score=35.60 Aligned_cols=195 Identities=15% Similarity=0.188 Sum_probs=83.6
Q ss_pred EEEeeCCCCCCceEEEccCCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCccccccccccc-CCcceEEEEe
Q 018242 26 VQYQIEGAIGPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHI-CGRPLGLCFN 104 (359)
Q Consensus 26 ~~~~~~~~~~p~~i~~~~~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~p~gi~~~ 104 (359)
+++.++.-....+|.|..+.+-+.++.. +.|++=+-.+..|...... .... ......|.+.
T Consensus 9 ~~v~l~t~~~l~dV~F~d~~~G~~VG~~-g~il~T~DGG~tW~~~~~~-----------------~~~~~~~~l~~I~f~ 70 (302)
T PF14870_consen 9 QQVSLPTDKPLLDVAFVDPNHGWAVGAY-GTILKTTDGGKTWQPVSLD-----------------LDNPFDYHLNSISFD 70 (302)
T ss_dssp EEEE-S-SS-EEEEEESSSS-EEEEETT-TEEEEESSTTSS-EE----------------------S-----EEEEEEEE
T ss_pred EEeecCCCCceEEEEEecCCEEEEEecC-CEEEEECCCCccccccccC-----------------CCccceeeEEEEEec
Confidence 3555555567789999977774445554 6665543333345543210 0000 0112355565
Q ss_pred cCCCeEEEEeCCCcEEEEeCCCC-eEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceE
Q 018242 105 KTNGDLYIADAYFGLLKVGPEGG-LATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRL 183 (359)
Q Consensus 105 ~~~g~l~v~~~~~~i~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v 183 (359)
+++.|++.. .+++....++| ..+.+... ...+ ..+..+....++. ++++. ..|.|
T Consensus 71 --~~~g~ivG~-~g~ll~T~DgG~tW~~v~l~-~~lp-gs~~~i~~l~~~~-~~l~~------------------~~G~i 126 (302)
T PF14870_consen 71 --GNEGWIVGE-PGLLLHTTDGGKTWERVPLS-SKLP-GSPFGITALGDGS-AELAG------------------DRGAI 126 (302)
T ss_dssp --TTEEEEEEE-TTEEEEESSTTSS-EE-----TT-S-S-EEEEEEEETTE-EEEEE------------------TT--E
T ss_pred --CCceEEEcC-CceEEEecCCCCCcEEeecC-CCCC-CCeeEEEEcCCCc-EEEEc------------------CCCcE
Confidence 456787653 35554455544 34443211 1111 1334455445555 55541 13467
Q ss_pred EEEeCCCCcEEEEeCC-CCCCceEEEccCCCEEEEEecCCCEEE-EEEcCCCCCcceeEeec-CCCCCCceEECCCCCEE
Q 018242 184 MKYDPATKQVTVLLGN-LSFPNGVALSEDGNYILLAETTSCRIL-RYWLKTSKAGTIEIVAQ-LPGFPDNIKRSPRGGFW 260 (359)
Q Consensus 184 ~~~d~~~~~~~~~~~~-~~~p~gia~~~d~~~l~v~~~~~~~i~-~~~~~~~~~~~~~~~~~-~~~~p~~i~~d~~G~lw 260 (359)
|+-...+...+.+... ....+.+.-++||+++.++ ..+.++ .++. .. ..-+.... ......+|.++++|+||
T Consensus 127 y~T~DgG~tW~~~~~~~~gs~~~~~r~~dG~~vavs--~~G~~~~s~~~--G~-~~w~~~~r~~~~riq~~gf~~~~~lw 201 (302)
T PF14870_consen 127 YRTTDGGKTWQAVVSETSGSINDITRSSDGRYVAVS--SRGNFYSSWDP--GQ-TTWQPHNRNSSRRIQSMGFSPDGNLW 201 (302)
T ss_dssp EEESSTTSSEEEEE-S----EEEEEE-TTS-EEEEE--TTSSEEEEE-T--T--SS-EEEE--SSS-EEEEEE-TTS-EE
T ss_pred EEeCCCCCCeeEcccCCcceeEeEEECCCCcEEEEE--CcccEEEEecC--CC-ccceEEccCccceehhceecCCCCEE
Confidence 7655444454443322 2233556667888755454 334444 3442 21 11222221 23345678999999999
Q ss_pred EEEecCC
Q 018242 261 VGIHSRR 267 (359)
Q Consensus 261 v~~~~~~ 267 (359)
+.+.++.
T Consensus 202 ~~~~Gg~ 208 (302)
T PF14870_consen 202 MLARGGQ 208 (302)
T ss_dssp EEETTTE
T ss_pred EEeCCcE
Confidence 9886543
No 285
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=93.26 E-value=8.8 Score=37.47 Aligned_cols=68 Identities=13% Similarity=0.121 Sum_probs=39.5
Q ss_pred EEEccCCCEEEEEecCCCEEEEEEcCCCCCccee-Ee--ecCC------CCCCceEECCCCC-EEEEEecCCCccccccc
Q 018242 206 VALSEDGNYILLAETTSCRILRYWLKTSKAGTIE-IV--AQLP------GFPDNIKRSPRGG-FWVGIHSRRKGISKLVL 275 (359)
Q Consensus 206 ia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~-~~--~~~~------~~p~~i~~d~~G~-lwv~~~~~~~~~~~~~~ 275 (359)
..+..|..+|.-+...++.|.+||+..+...-.+ .. ...+ -.--+++.|..|. |++.+.++. |+
T Consensus 223 vv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~s------Iy 296 (720)
T KOG0321|consen 223 VVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNS------IY 296 (720)
T ss_pred EEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCc------EE
Confidence 3455788877777776899999999754321111 00 0011 0123588899996 666555433 66
Q ss_pred cCCc
Q 018242 276 SFPW 279 (359)
Q Consensus 276 ~~~~ 279 (359)
.|+.
T Consensus 297 ~ynm 300 (720)
T KOG0321|consen 297 FYNM 300 (720)
T ss_pred EEec
Confidence 6654
No 286
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.16 E-value=1.6 Score=39.75 Aligned_cols=111 Identities=14% Similarity=0.095 Sum_probs=67.4
Q ss_pred EEEEecC-CCeEE-EEeCCCcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeec
Q 018242 100 GLCFNKT-NGDLY-IADAYFGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSG 177 (359)
Q Consensus 100 gi~~~~~-~g~l~-v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~ 177 (359)
++.|.+. ...-| .++..+.+..||+..+. +++... + ...+.+..+...|+|++||+++.
T Consensus 207 di~Fl~g~~~~~fat~T~~hqvR~YDt~~qR-RPV~~f-d-~~E~~is~~~l~p~gn~Iy~gn~---------------- 267 (412)
T KOG3881|consen 207 DIRFLEGSPNYKFATITRYHQVRLYDTRHQR-RPVAQF-D-FLENPISSTGLTPSGNFIYTGNT---------------- 267 (412)
T ss_pred cceecCCCCCceEEEEecceeEEEecCcccC-cceeEe-c-cccCcceeeeecCCCcEEEEecc----------------
Confidence 5556552 13444 44666678889987654 233221 1 11235667889999999999853
Q ss_pred CCCceEEEEeCCCCcEEEE-eCCC-CCCceEEEccCCCEEEEEecCCCEEEEEEcCC
Q 018242 178 DKTGRLMKYDPATKQVTVL-LGNL-SFPNGVALSEDGNYILLAETTSCRILRYWLKT 232 (359)
Q Consensus 178 ~~~g~v~~~d~~~~~~~~~-~~~~-~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~ 232 (359)
.+.+..||..++++... ..+. -.+.+|...|.+. ++.+..-+..|..+|++.
T Consensus 268 --~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~-~las~GLDRyvRIhD~kt 321 (412)
T KOG3881|consen 268 --KGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHP-VLASCGLDRYVRIHDIKT 321 (412)
T ss_pred --cchhheecccCceeeccccCCccCCcceEEEcCCCc-eEEeeccceeEEEeeccc
Confidence 45788899887655432 2332 3468888887765 344444455677777654
No 287
>PRK13616 lipoprotein LpqB; Provisional
Probab=93.11 E-value=10 Score=37.75 Aligned_cols=71 Identities=8% Similarity=0.044 Sum_probs=41.6
Q ss_pred ccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEE---EeCCCCcEEE-----EeCCCCC-CceEEEccCCC
Q 018242 143 FCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMK---YDPATKQVTV-----LLGNLSF-PNGVALSEDGN 213 (359)
Q Consensus 143 ~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~---~d~~~~~~~~-----~~~~~~~-p~gia~~~d~~ 213 (359)
.+..+.+++||.++.+.-. +.|+. ...++|..+. +...... +..+.+..++.
T Consensus 449 ~Issl~wSpDG~RiA~i~~-------------------g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l~W~~~~~ 509 (591)
T PRK13616 449 PISELQLSRDGVRAAMIIG-------------------GKVYLAVVEQTEDGQYALTNPREVGPGLGDTAVSLDWRTGDS 509 (591)
T ss_pred CcCeEEECCCCCEEEEEEC-------------------CEEEEEEEEeCCCCceeecccEEeecccCCccccceEecCCE
Confidence 5788999999997776521 23333 2333444322 2222333 46788888887
Q ss_pred EEEEEec-CCCEEEEEEcCCC
Q 018242 214 YILLAET-TSCRILRYWLKTS 233 (359)
Q Consensus 214 ~l~v~~~-~~~~i~~~~~~~~ 233 (359)
|++... .+..++++.+++.
T Consensus 510 -L~V~~~~~~~~v~~v~vDG~ 529 (591)
T PRK13616 510 -LVVGRSDPEHPVWYVNLDGS 529 (591)
T ss_pred -EEEEecCCCCceEEEecCCc
Confidence 455443 3456888887754
No 288
>smart00135 LY Low-density lipoprotein-receptor YWTD domain. Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.
Probab=93.10 E-value=0.39 Score=28.67 Aligned_cols=38 Identities=24% Similarity=0.080 Sum_probs=30.6
Q ss_pred EeeCCCCCCceEEEccCC-CeeEEecCCCEEEEEEcCCc
Q 018242 28 YQIEGAIGPESLAFDALG-EGPYTGVSDGRIIKWHQDQR 65 (359)
Q Consensus 28 ~~~~~~~~p~~i~~~~~G-~~l~~~~~~~~i~~~d~~~~ 65 (359)
+...++..|.++++|+.+ +++|++...+.|.+.+.++.
T Consensus 3 ~~~~~~~~~~~la~d~~~~~lYw~D~~~~~I~~~~~~g~ 41 (43)
T smart00135 3 LLSEGLGHPNGLAVDWIEGRLYWTDWGLDVIEVANLDGT 41 (43)
T ss_pred EEECCCCCcCEEEEeecCCEEEEEeCCCCEEEEEeCCCC
Confidence 445578899999999975 56778988899999887764
No 289
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=92.90 E-value=7.4 Score=35.65 Aligned_cols=162 Identities=12% Similarity=0.068 Sum_probs=89.3
Q ss_pred CceEEEccCCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccC--CcceEEEEecCCCeEEEE
Q 018242 36 PESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHIC--GRPLGLCFNKTNGDLYIA 113 (359)
Q Consensus 36 p~~i~~~~~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~p~gi~~~~~~g~l~v~ 113 (359)
-..|.|+.+|+.|..+..+-++..|+-+..-.+..+.+ +.+.... .....++|+..+..+|-+
T Consensus 59 iNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KP---------------I~~~~~~H~SNIF~L~F~~~N~~~~SG 123 (609)
T KOG4227|consen 59 INALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKP---------------IGVMEHPHRSNIFSLEFDLENRFLYSG 123 (609)
T ss_pred cceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCC---------------ceeccCccccceEEEEEccCCeeEecC
Confidence 34688888888444555556777787654312111100 1111111 234578888745556655
Q ss_pred eCCCcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCCc-
Q 018242 114 DAYFGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQ- 192 (359)
Q Consensus 114 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~- 192 (359)
.....+++-|.++.+...+..... .-..++++.++|-.+ +++..+ ..+.|..||.....
T Consensus 124 ~~~~~VI~HDiEt~qsi~V~~~~~--~~~~VY~m~~~P~DN-~~~~~t-----------------~~~~V~~~D~Rd~~~ 183 (609)
T KOG4227|consen 124 ERWGTVIKHDIETKQSIYVANENN--NRGDVYHMDQHPTDN-TLIVVT-----------------RAKLVSFIDNRDRQN 183 (609)
T ss_pred CCcceeEeeecccceeeeeecccC--cccceeecccCCCCc-eEEEEe-----------------cCceEEEEeccCCCC
Confidence 545568888888776544433211 123567788888888 666532 24556667654221
Q ss_pred -EEEEe--CCCCCCceEEEccCCCEEEEEecCCCEEEEEEcCC
Q 018242 193 -VTVLL--GNLSFPNGVALSEDGNYILLAETTSCRILRYWLKT 232 (359)
Q Consensus 193 -~~~~~--~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~ 232 (359)
...+. .....-....|.|..-.|+.++...+++-+||+..
T Consensus 184 ~~~~~~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~ 226 (609)
T KOG4227|consen 184 PISLVLPANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRM 226 (609)
T ss_pred CCceeeecCCCccceeeeecCCCceeEEeccccCCCCceeecc
Confidence 11111 11112234556665555777777778888888753
No 290
>PRK13616 lipoprotein LpqB; Provisional
Probab=92.89 E-value=11 Score=37.53 Aligned_cols=112 Identities=12% Similarity=0.136 Sum_probs=61.0
Q ss_pred ceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCCcEEEEeCCCCCCceEEEccCCCEEEEEecCCCE
Q 018242 145 NSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQVTVLLGNLSFPNGVALSEDGNYILLAETTSCR 224 (359)
Q Consensus 145 ~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~p~gia~~~d~~~l~v~~~~~~~ 224 (359)
..-.++++|+.+|+...+.. ...+......+.++.++.++++... .-...+..+.+++||+++.+.. .++
T Consensus 400 t~PsWspDG~~lw~v~dg~~------~~~v~~~~~~gql~~~~vd~ge~~~--~~~g~Issl~wSpDG~RiA~i~--~g~ 469 (591)
T PRK13616 400 TRPSWSLDADAVWVVVDGNT------VVRVIRDPATGQLARTPVDASAVAS--RVPGPISELQLSRDGVRAAMII--GGK 469 (591)
T ss_pred CCceECCCCCceEEEecCcc------eEEEeccCCCceEEEEeccCchhhh--ccCCCcCeEEECCCCCEEEEEE--CCE
Confidence 34589999777998843211 0011111234567766666555443 1122478899999999876665 357
Q ss_pred EEEEEcCCCCCcceeE-----eec-CCCCCCceEECCCCCEEEEEecC
Q 018242 225 ILRYWLKTSKAGTIEI-----VAQ-LPGFPDNIKRSPRGGFWVGIHSR 266 (359)
Q Consensus 225 i~~~~~~~~~~~~~~~-----~~~-~~~~p~~i~~d~~G~lwv~~~~~ 266 (359)
|++--+....-+..+. +.. +...+..+.+-.++.|.+++...
T Consensus 470 v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l~W~~~~~L~V~~~~~ 517 (591)
T PRK13616 470 VYLAVVEQTEDGQYALTNPREVGPGLGDTAVSLDWRTGDSLVVGRSDP 517 (591)
T ss_pred EEEEEEEeCCCCceeecccEEeecccCCccccceEecCCEEEEEecCC
Confidence 7773221111112111 211 22334567787788888776543
No 291
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=92.83 E-value=1.2 Score=38.48 Aligned_cols=70 Identities=24% Similarity=0.158 Sum_probs=47.0
Q ss_pred cccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCCcEE-EEeCCCCCCceEEEccCCCEEEEEec
Q 018242 142 RFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQVT-VLLGNLSFPNGVALSEDGNYILLAET 220 (359)
Q Consensus 142 ~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~-~~~~~~~~p~gia~~~d~~~l~v~~~ 220 (359)
..++++.+-+|++ +..+- ++++++.+|+=.+.... .+..+-...+.+||+||-. +..+.+
T Consensus 252 pGv~gvrIRpD~K-IlATA-----------------GWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~-lmAaas 312 (323)
T KOG0322|consen 252 PGVSGVRIRPDGK-ILATA-----------------GWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCE-LMAAAS 312 (323)
T ss_pred CCccceEEccCCc-EEeec-----------------ccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCc-hhhhcc
Confidence 3577899999999 77762 34455555544433322 2223335678999999965 778888
Q ss_pred CCCEEEEEEc
Q 018242 221 TSCRILRYWL 230 (359)
Q Consensus 221 ~~~~i~~~~~ 230 (359)
.+.+|-.|++
T Consensus 313 kD~rISLWkL 322 (323)
T KOG0322|consen 313 KDARISLWKL 322 (323)
T ss_pred CCceEEeeec
Confidence 8889988874
No 292
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=92.74 E-value=5.9 Score=34.05 Aligned_cols=80 Identities=9% Similarity=-0.034 Sum_probs=53.6
Q ss_pred CCceEEEccCCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEEe
Q 018242 35 GPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIAD 114 (359)
Q Consensus 35 ~p~~i~~~~~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~~ 114 (359)
.-..|..||.-+-++.+..++-+|.+|.++++++.. +.......+.++.-..++.++-+.
T Consensus 116 eINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~--------------------~rGHtDYvH~vv~R~~~~qilsG~ 175 (325)
T KOG0649|consen 116 EINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQRE--------------------YRGHTDYVHSVVGRNANGQILSGA 175 (325)
T ss_pred ccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEE--------------------EcCCcceeeeeeecccCcceeecC
Confidence 344889997543366666889999999999876542 233334456666534378888776
Q ss_pred CCCcEEEEeCCCCeEEEEee
Q 018242 115 AYFGLLKVGPEGGLATAVAT 134 (359)
Q Consensus 115 ~~~~i~~~~~~~~~~~~~~~ 134 (359)
..+.+..+|.++++...+..
T Consensus 176 EDGtvRvWd~kt~k~v~~ie 195 (325)
T KOG0649|consen 176 EDGTVRVWDTKTQKHVSMIE 195 (325)
T ss_pred CCccEEEEeccccceeEEec
Confidence 55557788999887655444
No 293
>PRK13684 Ycf48-like protein; Provisional
Probab=92.71 E-value=7.9 Score=35.48 Aligned_cols=138 Identities=12% Similarity=0.097 Sum_probs=65.8
Q ss_pred ceEEEEecCCCeEEEEeCCCcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeec
Q 018242 98 PLGLCFNKTNGDLYIADAYFGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSG 177 (359)
Q Consensus 98 p~gi~~~~~~g~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~ 177 (359)
+..+.... ++.+|++...+.|++-+-.+...+.+... ....++++.+++++. +++..
T Consensus 134 ~~~i~~~~-~~~~~~~g~~G~i~~S~DgG~tW~~~~~~----~~g~~~~i~~~~~g~-~v~~g----------------- 190 (334)
T PRK13684 134 PYLITALG-PGTAEMATNVGAIYRTTDGGKNWEALVED----AAGVVRNLRRSPDGK-YVAVS----------------- 190 (334)
T ss_pred ceEEEEEC-CCcceeeeccceEEEECCCCCCceeCcCC----CcceEEEEEECCCCe-EEEEe-----------------
Confidence 33443333 45566655444455544334444433221 123567788888886 55441
Q ss_pred CCCceEEEE-eCCCCcEEEEeC-CCCCCceEEEccCCCEEEEEecCCCEEEEEE-cCCCCCcceeEeecCC-----CCCC
Q 018242 178 DKTGRLMKY-DPATKQVTVLLG-NLSFPNGVALSEDGNYILLAETTSCRILRYW-LKTSKAGTIEIVAQLP-----GFPD 249 (359)
Q Consensus 178 ~~~g~v~~~-d~~~~~~~~~~~-~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~-~~~~~~~~~~~~~~~~-----~~p~ 249 (359)
..|.+++- +..+...+.+.. ......++++.++++ +|+.... + ..++. .++. .+.... ..+ ....
T Consensus 191 -~~G~i~~s~~~gg~tW~~~~~~~~~~l~~i~~~~~g~-~~~vg~~-G-~~~~~s~d~G-~sW~~~--~~~~~~~~~~l~ 263 (334)
T PRK13684 191 -SRGNFYSTWEPGQTAWTPHQRNSSRRLQSMGFQPDGN-LWMLARG-G-QIRFNDPDDL-ESWSKP--IIPEITNGYGYL 263 (334)
T ss_pred -CCceEEEEcCCCCCeEEEeeCCCcccceeeeEcCCCC-EEEEecC-C-EEEEccCCCC-Cccccc--cCCcccccccee
Confidence 13455554 222223444332 223457888888887 5555433 3 33342 2221 111110 111 1123
Q ss_pred ceEECCCCCEEEEEec
Q 018242 250 NIKRSPRGGFWVGIHS 265 (359)
Q Consensus 250 ~i~~d~~G~lwv~~~~ 265 (359)
++++.+++.+|++...
T Consensus 264 ~v~~~~~~~~~~~G~~ 279 (334)
T PRK13684 264 DLAYRTPGEIWAGGGN 279 (334)
T ss_pred eEEEcCCCCEEEEcCC
Confidence 4677778888886653
No 294
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=92.52 E-value=9.5 Score=35.95 Aligned_cols=121 Identities=14% Similarity=0.142 Sum_probs=64.8
Q ss_pred EEEEecCCCeEEEE-eCCC----cEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeee
Q 018242 100 GLCFNKTNGDLYIA-DAYF----GLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVI 174 (359)
Q Consensus 100 gi~~~~~~g~l~v~-~~~~----~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~ 174 (359)
++.+++++..+.++ +..+ .|..+|.++|+... ..+. ......+.+.++|+.+|.+.........
T Consensus 128 ~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~--d~i~---~~~~~~~~W~~d~~~~~y~~~~~~~~~~------ 196 (414)
T PF02897_consen 128 GFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLP--DGIE---NPKFSSVSWSDDGKGFFYTRFDEDQRTS------ 196 (414)
T ss_dssp EEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEE--EEEE---EEESEEEEECTTSSEEEEEECSTTTSS-------
T ss_pred eeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcC--Cccc---ccccceEEEeCCCCEEEEEEeCcccccc------
Confidence 56788844445555 3232 28888999986532 2111 1122238999998866666432110000
Q ss_pred eecCCCceEEEEeCCCCcEE--EEeCCCCCCc---eEEEccCCCEEEEEecCC---CEEEEEEcCC
Q 018242 175 LSGDKTGRLMKYDPATKQVT--VLLGNLSFPN---GVALSEDGNYILLAETTS---CRILRYWLKT 232 (359)
Q Consensus 175 ~~~~~~g~v~~~d~~~~~~~--~~~~~~~~p~---gia~~~d~~~l~v~~~~~---~~i~~~~~~~ 232 (359)
.......|++....+...+ .+......+. ++..++|++++++..... ..++.+++..
T Consensus 197 -~~~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~ 261 (414)
T PF02897_consen 197 -DSGYPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDD 261 (414)
T ss_dssp -CCGCCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCC
T ss_pred -cCCCCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccc
Confidence 0011335888887655322 3433333333 678899999877654443 4578887765
No 295
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=92.51 E-value=5.9 Score=33.51 Aligned_cols=79 Identities=15% Similarity=0.185 Sum_probs=49.7
Q ss_pred CCceEEEccCCCEEEEEecCCCEEEEEEcCCCCCcceeEeecCCCCCCceEECCCCC-EEEEEecCCCccccccccCCcc
Q 018242 202 FPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGG-FWVGIHSRRKGISKLVLSFPWI 280 (359)
Q Consensus 202 ~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~-lwv~~~~~~~~~~~~~~~~~~~ 280 (359)
....++.+|.|+ |+++...+..-..||+.++.. .+.|.....-.+.+.++|.-. +..++.+.. +...+.+
T Consensus 233 avaav~vdpsgr-ll~sg~~dssc~lydirg~r~--iq~f~phsadir~vrfsp~a~yllt~syd~~------ikltdlq 303 (350)
T KOG0641|consen 233 AVAAVAVDPSGR-LLASGHADSSCMLYDIRGGRM--IQRFHPHSADIRCVRFSPGAHYLLTCSYDMK------IKLTDLQ 303 (350)
T ss_pred eeEEEEECCCcc-eeeeccCCCceEEEEeeCCce--eeeeCCCccceeEEEeCCCceEEEEecccce------EEEeecc
Confidence 345788999997 788888888888899876532 233433223345677877443 333444332 6666677
Q ss_pred ceeeecCCc
Q 018242 281 GNVLIKLPI 289 (359)
Q Consensus 281 g~~~~~~~~ 289 (359)
|.+.+.+|.
T Consensus 304 gdla~el~~ 312 (350)
T KOG0641|consen 304 GDLAHELPI 312 (350)
T ss_pred cchhhcCce
Confidence 877776653
No 296
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=92.49 E-value=9.1 Score=35.63 Aligned_cols=145 Identities=10% Similarity=0.082 Sum_probs=85.9
Q ss_pred eeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEEeCCC-cEEEEeCC
Q 018242 47 GPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIADAYF-GLLKVGPE 125 (359)
Q Consensus 47 ~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~~~~~-~i~~~~~~ 125 (359)
+|..+..+..|..||..+++-.. .+.+.......+.+.+....+.+..... .+..+|..
T Consensus 258 VLaSgsaD~TV~lWD~~~g~p~~--------------------s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R 317 (463)
T KOG0270|consen 258 VLASGSADKTVKLWDVDTGKPKS--------------------SITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCR 317 (463)
T ss_pred eEEecCCCceEEEEEcCCCCcce--------------------ehhhcCCceeEEEecCCCceEEEeccccceEEeeecc
Confidence 57788889999999999873221 2334445667788887666766654443 35555543
Q ss_pred C-CeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCC-cEE-EEeCCCCC
Q 018242 126 G-GLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATK-QVT-VLLGNLSF 202 (359)
Q Consensus 126 ~-~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~-~~~-~~~~~~~~ 202 (359)
. ... ...-.. ...+..+++++.....++. ++..|.|+.+|.... +.. .+..+...
T Consensus 318 ~~~~s-~~~wk~----~g~VEkv~w~~~se~~f~~-----------------~tddG~v~~~D~R~~~~~vwt~~AHd~~ 375 (463)
T KOG0270|consen 318 DPSNS-GKEWKF----DGEVEKVAWDPHSENSFFV-----------------STDDGTVYYFDIRNPGKPVWTLKAHDDE 375 (463)
T ss_pred Ccccc-CceEEe----ccceEEEEecCCCceeEEE-----------------ecCCceEEeeecCCCCCceeEEEeccCC
Confidence 1 000 000000 1134456777654423333 133567887876532 221 22233345
Q ss_pred CceEEEccCCCEEEEEecCCCEEEEEEcCCC
Q 018242 203 PNGVALSEDGNYILLAETTSCRILRYWLKTS 233 (359)
Q Consensus 203 p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~ 233 (359)
..||+++.....+..+.+....+..|++...
T Consensus 376 ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~ 406 (463)
T KOG0270|consen 376 ISGLSVNIQTPGLLSTASTDKVVKLWKFDVD 406 (463)
T ss_pred cceEEecCCCCcceeeccccceEEEEeecCC
Confidence 6899998877778899888888888887644
No 297
>PF14339 DUF4394: Domain of unknown function (DUF4394)
Probab=92.48 E-value=6.4 Score=33.83 Aligned_cols=114 Identities=23% Similarity=0.316 Sum_probs=68.3
Q ss_pred cceEEEEecCCCeEEEEeCCCcEEEEeCCCCeEEEEe-ecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeee
Q 018242 97 RPLGLCFNKTNGDLYIADAYFGLLKVGPEGGLATAVA-TQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVIL 175 (359)
Q Consensus 97 ~p~gi~~~~~~g~l~v~~~~~~i~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~ 175 (359)
...||.+-|.+|+||-....++||.+|+.++..+.+. ......-.....++.+.|-=.+|-|-
T Consensus 28 ~l~GID~Rpa~G~LYgl~~~g~lYtIn~~tG~aT~vg~s~~~~al~g~~~gvDFNP~aDRlRvv---------------- 91 (236)
T PF14339_consen 28 SLVGIDFRPANGQLYGLGSTGRLYTINPATGAATPVGASPLTVALSGTAFGVDFNPAADRLRVV---------------- 91 (236)
T ss_pred eEEEEEeecCCCCEEEEeCCCcEEEEECCCCeEEEeecccccccccCceEEEecCcccCcEEEE----------------
Confidence 4568989898999998877778999999999877662 11111111124455666653336665
Q ss_pred ecCCCceEEEEeCCCCcEEEEeCCC----------CCC--ceEEEccC------CCEEEEEecCCCEEEEE
Q 018242 176 SGDKTGRLMKYDPATKQVTVLLGNL----------SFP--NGVALSED------GNYILLAETTSCRILRY 228 (359)
Q Consensus 176 ~~~~~g~v~~~d~~~~~~~~~~~~~----------~~p--~gia~~~d------~~~l~v~~~~~~~i~~~ 228 (359)
+..|.=+|++++++.+......+ ..| .+.|++.. ...||-.+...+.|++-
T Consensus 92 --s~~GqNlR~npdtGav~~~Dg~L~y~~gd~~~G~~p~v~aaAYTNs~~g~~t~TtLy~ID~~~~~Lv~Q 160 (236)
T PF14339_consen 92 --SNTGQNLRLNPDTGAVTIVDGNLAYAAGDMNAGTTPGVTAAAYTNSFAGATTSTTLYDIDTTLDALVTQ 160 (236)
T ss_pred --ccCCcEEEECCCCCCceeccCccccCCCccccCCCCceEEEEEecccCCCccceEEEEEecCCCeEEEe
Confidence 22456778888887744332211 122 24455432 34577777666666654
No 298
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=92.40 E-value=7.5 Score=34.48 Aligned_cols=135 Identities=16% Similarity=0.116 Sum_probs=73.0
Q ss_pred CCeEEEEeCCCcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEE
Q 018242 107 NGDLYIADAYFGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKY 186 (359)
Q Consensus 107 ~g~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~ 186 (359)
+...|++++..||..+|..+-...++....... .... .++-.|++.||+|.. .++..+
T Consensus 96 e~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~--gyay--gv~vsGn~aYVadld------------------dgfLiv 153 (370)
T COG5276 96 EEYVYVADWSSGLRIVDISTPDSPTLIGFLNTD--GYAY--GVYVSGNYAYVADLD------------------DGFLIV 153 (370)
T ss_pred ccEEEEEcCCCceEEEeccCCCCcceeccccCC--ceEE--EEEecCCEEEEeecc------------------CcEEEE
Confidence 788999999899999988754322222111100 1222 344567889999642 245556
Q ss_pred eCCCCcEEEEeCCCCCC----ceEEEccCCCEEEEEecCCCEEEEEEcCCCCCcceeEeecCCCCCCceEECCCCCEEEE
Q 018242 187 DPATKQVTVLLGNLSFP----NGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGGFWVG 262 (359)
Q Consensus 187 d~~~~~~~~~~~~~~~p----~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lwv~ 262 (359)
|..+-.-.++......| ..++++ |++-|++.. ++++...|+..+....+..-.+.++....+.+. +.+.|++
T Consensus 154 dvsdpssP~lagrya~~~~d~~~v~IS--Gn~AYvA~~-d~GL~ivDVSnp~sPvli~~~n~g~g~~sv~vs-dnr~y~v 229 (370)
T COG5276 154 DVSDPSSPQLAGRYALPGGDTHDVAIS--GNYAYVAWR-DGGLTIVDVSNPHSPVLIGSYNTGPGTYSVSVS-DNRAYLV 229 (370)
T ss_pred ECCCCCCceeeeeeccCCCCceeEEEe--cCeEEEEEe-CCCeEEEEccCCCCCeEEEEEecCCceEEEEec-CCeeEEE
Confidence 65443322333323333 345664 667888864 467899998765322221111122223444543 3556766
Q ss_pred EecCC
Q 018242 263 IHSRR 267 (359)
Q Consensus 263 ~~~~~ 267 (359)
..+.+
T Consensus 230 vy~eg 234 (370)
T COG5276 230 VYDEG 234 (370)
T ss_pred Ecccc
Confidence 66554
No 299
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=92.30 E-value=10 Score=36.81 Aligned_cols=103 Identities=13% Similarity=0.208 Sum_probs=57.3
Q ss_pred ccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCCcEE-EEeCCCCCCceEEEccCCCEEEEEecC
Q 018242 143 FCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQVT-VLLGNLSFPNGVALSEDGNYILLAETT 221 (359)
Q Consensus 143 ~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~-~~~~~~~~p~gia~~~d~~~l~v~~~~ 221 (359)
.++.+.++.+|. .+.+.+.. +..-.|+..+...+..+ .+......+....|.|...+++|+.
T Consensus 523 ~i~~vtWHrkGD-YlatV~~~--------------~~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaT-- 585 (733)
T KOG0650|consen 523 SIRQVTWHRKGD-YLATVMPD--------------SGNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVAT-- 585 (733)
T ss_pred ccceeeeecCCc-eEEEeccC--------------CCcceEEEEecccccccCchhhcCCceeEEEecCCCceEEEEe--
Confidence 466788888887 33332211 11224666665433222 1111223467788888877788874
Q ss_pred CCEEEEEEcCCCCCcceeEeec-CCC--CCCceEECCCC-CEEEEEecCC
Q 018242 222 SCRILRYWLKTSKAGTIEIVAQ-LPG--FPDNIKRSPRG-GFWVGIHSRR 267 (359)
Q Consensus 222 ~~~i~~~~~~~~~~~~~~~~~~-~~~--~p~~i~~d~~G-~lwv~~~~~~ 267 (359)
...|..||+... +.... +++ ....|++.+.| +|.+++....
T Consensus 586 q~~vRiYdL~kq-----elvKkL~tg~kwiS~msihp~GDnli~gs~d~k 630 (733)
T KOG0650|consen 586 QRSVRIYDLSKQ-----ELVKKLLTGSKWISSMSIHPNGDNLILGSYDKK 630 (733)
T ss_pred ccceEEEehhHH-----HHHHHHhcCCeeeeeeeecCCCCeEEEecCCCe
Confidence 356888887432 11111 222 24568888877 6888877655
No 300
>PF07494 Reg_prop: Two component regulator propeller; InterPro: IPR011110 A large group of two component regulator proteins appear to have the same N-terminal structure of 14 tandem repeats. These repeats show homology to members of IPR002372 from INTERPRO and IPR001680 from INTERPRO indicating that they are likely to form a beta-propeller. This family has been built with artificially high cut-offs in order to avoid overlaps with other beta-propeller families. The fourteen repeats are likely to form two propellers; it is not clear if these structures are likely to recruit other proteins or interact with DNA.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.
Probab=92.19 E-value=0.26 Score=25.74 Aligned_cols=19 Identities=11% Similarity=0.048 Sum_probs=15.3
Q ss_pred ccccceEEEeCCCCEEEEEe
Q 018242 141 FRFCNSLDIDQSTGIIYFTD 160 (359)
Q Consensus 141 ~~~~~~l~~d~~g~~l~v~d 160 (359)
...+..|..|++|+ ||++.
T Consensus 4 ~n~I~~i~~D~~G~-lWigT 22 (24)
T PF07494_consen 4 NNNIYSIYEDSDGN-LWIGT 22 (24)
T ss_dssp SSCEEEEEE-TTSC-EEEEE
T ss_pred CCeEEEEEEcCCcC-EEEEe
Confidence 45678999999999 99984
No 301
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=92.13 E-value=2 Score=40.05 Aligned_cols=40 Identities=15% Similarity=0.315 Sum_probs=31.7
Q ss_pred EEeeCCCCCCceEEEccCCCeeEEecCCCEEEEEEcCCcce
Q 018242 27 QYQIEGAIGPESLAFDALGEGPYTGVSDGRIIKWHQDQRRW 67 (359)
Q Consensus 27 ~~~~~~~~~p~~i~~~~~G~~l~~~~~~~~i~~~d~~~~~~ 67 (359)
-+..++ ++|..+....+|+-+.++...|.|-.+|-.+...
T Consensus 124 ~L~l~e-FGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L 163 (545)
T KOG1272|consen 124 DLSLPE-FGPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKL 163 (545)
T ss_pred cccccc-cCCeeeeecCCccEEEecCCccceeeeeccccee
Confidence 344443 6999999999999888888889999888777643
No 302
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=91.78 E-value=12 Score=35.53 Aligned_cols=123 Identities=18% Similarity=0.165 Sum_probs=69.1
Q ss_pred cEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCCcEEEEe
Q 018242 118 GLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQVTVLL 197 (359)
Q Consensus 118 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~ 197 (359)
.+++++.++++...+.. ..+ .-..-.+.|||++|.++... ...-.||.+|..++....+.
T Consensus 219 ~i~~~~l~~g~~~~i~~-~~g----~~~~P~fspDG~~l~f~~~r---------------dg~~~iy~~dl~~~~~~~Lt 278 (425)
T COG0823 219 RIYYLDLNTGKRPVILN-FNG----NNGAPAFSPDGSKLAFSSSR---------------DGSPDIYLMDLDGKNLPRLT 278 (425)
T ss_pred eEEEEeccCCccceeec-cCC----ccCCccCCCCCCEEEEEECC---------------CCCccEEEEcCCCCcceecc
Confidence 48888888876554433 111 11234788999977766322 22336999999877654432
Q ss_pred CCCCCCceEEEccCCCEEEEEecCCC--EEEEEEcCCCCCcceeEeecCCCCCCceEECCCCCEEEEE
Q 018242 198 GNLSFPNGVALSEDGNYILLAETTSC--RILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGGFWVGI 263 (359)
Q Consensus 198 ~~~~~p~gia~~~d~~~l~v~~~~~~--~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lwv~~ 263 (359)
.....-..-.++|||+.++.+....+ .|+++++++... +.+....+....-.++++|+..+-.
T Consensus 279 ~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~---~riT~~~~~~~~p~~SpdG~~i~~~ 343 (425)
T COG0823 279 NGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV---TRLTFSGGGNSNPVWSPDGDKIVFE 343 (425)
T ss_pred cCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce---eEeeccCCCCcCccCCCCCCEEEEE
Confidence 22111224568899998777765555 466666554322 2222211212245667888755533
No 303
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=91.70 E-value=12 Score=35.29 Aligned_cols=210 Identities=8% Similarity=0.071 Sum_probs=98.8
Q ss_pred eEEEccCCCeeEEec-CC----CEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEE
Q 018242 38 SLAFDALGEGPYTGV-SD----GRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYI 112 (359)
Q Consensus 38 ~i~~~~~G~~l~~~~-~~----~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v 112 (359)
.+.++|+|+++..+. .+ ..|+.+|..+++...- .+... ...++.+.+++..+|.
T Consensus 128 ~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d-------------------~i~~~--~~~~~~W~~d~~~~~y 186 (414)
T PF02897_consen 128 GFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPD-------------------GIENP--KFSSVSWSDDGKGFFY 186 (414)
T ss_dssp EEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEE-------------------EEEEE--ESEEEEECTTSSEEEE
T ss_pred eeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCC-------------------ccccc--ccceEEEeCCCCEEEE
Confidence 456778887544332 22 3577788877633221 11111 1223788884444444
Q ss_pred EeCCC-----------cEEEEeCCCCeEE--EEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCC
Q 018242 113 ADAYF-----------GLLKVGPEGGLAT--AVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDK 179 (359)
Q Consensus 113 ~~~~~-----------~i~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~ 179 (359)
..... .|++....+...+ .+... ..... ...++..+++|+++++.... ..
T Consensus 187 ~~~~~~~~~~~~~~~~~v~~~~~gt~~~~d~lvfe~-~~~~~-~~~~~~~s~d~~~l~i~~~~---------------~~ 249 (414)
T PF02897_consen 187 TRFDEDQRTSDSGYPRQVYRHKLGTPQSEDELVFEE-PDEPF-WFVSVSRSKDGRYLFISSSS---------------GT 249 (414)
T ss_dssp EECSTTTSS-CCGCCEEEEEEETTS-GGG-EEEEC--TTCTT-SEEEEEE-TTSSEEEEEEES---------------SS
T ss_pred EEeCcccccccCCCCcEEEEEECCCChHhCeeEEee-cCCCc-EEEEEEecCcccEEEEEEEc---------------cc
Confidence 43211 2677777655432 22221 11111 13467889999977776332 12
Q ss_pred C-ceEEEEeCCCC-----cEEEEeCCCCCCceEEEccCCCEEEEEecC---CCEEEEEEcCCCCCccee-Eeec-CCC-C
Q 018242 180 T-GRLMKYDPATK-----QVTVLLGNLSFPNGVALSEDGNYILLAETT---SCRILRYWLKTSKAGTIE-IVAQ-LPG-F 247 (359)
Q Consensus 180 ~-g~v~~~d~~~~-----~~~~~~~~~~~p~gia~~~d~~~l~v~~~~---~~~i~~~~~~~~~~~~~~-~~~~-~~~-~ 247 (359)
. ..++.++...+ ..+.+........... ...+..+|+.... +++|.+++++........ .+.. ... .
T Consensus 250 ~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v-~~~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~ 328 (414)
T PF02897_consen 250 SESEVYLLDLDDGGSPDAKPKLLSPREDGVEYYV-DHHGDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVS 328 (414)
T ss_dssp SEEEEEEEECCCTTTSS-SEEEEEESSSS-EEEE-EEETTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEE
T ss_pred cCCeEEEEeccccCCCcCCcEEEeCCCCceEEEE-EccCCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCcee
Confidence 2 57888888754 4555543333222222 2234445554322 468888888765332222 3332 111 2
Q ss_pred CCceEECCCCCEEEEEecCCCccccccccCCcc-ceeeecCCcc
Q 018242 248 PDNIKRSPRGGFWVGIHSRRKGISKLVLSFPWI-GNVLIKLPID 290 (359)
Q Consensus 248 p~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~ 290 (359)
..++.... +.|.+....++. ..+.+++.. ++....++.+
T Consensus 329 l~~~~~~~-~~Lvl~~~~~~~---~~l~v~~~~~~~~~~~~~~p 368 (414)
T PF02897_consen 329 LEDVSLFK-DYLVLSYRENGS---SRLRVYDLDDGKESREIPLP 368 (414)
T ss_dssp EEEEEEET-TEEEEEEEETTE---EEEEEEETT-TEEEEEEESS
T ss_pred EEEEEEEC-CEEEEEEEECCc---cEEEEEECCCCcEEeeecCC
Confidence 33444433 345555554432 224445555 5555544443
No 304
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=91.66 E-value=1.4 Score=39.80 Aligned_cols=153 Identities=12% Similarity=0.101 Sum_probs=91.3
Q ss_pred CCceEEEccCCC-eeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEE
Q 018242 35 GPESLAFDALGE-GPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIA 113 (359)
Q Consensus 35 ~p~~i~~~~~G~-~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~ 113 (359)
.-.++.+.|--. +|-++..++.|+.||..++... ...-..-.+.+|++.| +...|++
T Consensus 189 ti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl---------------------~KVi~~mRTN~IswnP-eafnF~~ 246 (433)
T KOG0268|consen 189 SISSVKFNPVETSILASCASDRSIVLYDLRQASPL---------------------KKVILTMRTNTICWNP-EAFNFVA 246 (433)
T ss_pred ceeEEecCCCcchheeeeccCCceEEEecccCCcc---------------------ceeeeeccccceecCc-cccceee
Confidence 445677777543 3445558889999999876311 1111223467899999 7777766
Q ss_pred -eCCCcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCCc
Q 018242 114 -DAYFGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQ 192 (359)
Q Consensus 114 -~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~ 192 (359)
+....+|.+|+..-. +++ ... ......+.++.++|-|. =+++- +.+-.|-.|....+.
T Consensus 247 a~ED~nlY~~DmR~l~-~p~-~v~-~dhvsAV~dVdfsptG~-Efvsg-----------------syDksIRIf~~~~~~ 305 (433)
T KOG0268|consen 247 ANEDHNLYTYDMRNLS-RPL-NVH-KDHVSAVMDVDFSPTGQ-EFVSG-----------------SYDKSIRIFPVNHGH 305 (433)
T ss_pred ccccccceehhhhhhc-ccc-hhh-cccceeEEEeccCCCcc-hhccc-----------------cccceEEEeecCCCc
Confidence 334468888875311 111 100 11223566788889998 66662 222234444444444
Q ss_pred EEEEe--CCCCCCceEEEccCCCEEEEEecCCCEEEEEEcC
Q 018242 193 VTVLL--GNLSFPNGVALSEDGNYILLAETTSCRILRYWLK 231 (359)
Q Consensus 193 ~~~~~--~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~ 231 (359)
.+.+. ..+....++.++.|.+ .++++++++.|..|...
T Consensus 306 SRdiYhtkRMq~V~~Vk~S~Dsk-yi~SGSdd~nvRlWka~ 345 (433)
T KOG0268|consen 306 SRDIYHTKRMQHVFCVKYSMDSK-YIISGSDDGNVRLWKAK 345 (433)
T ss_pred chhhhhHhhhheeeEEEEecccc-EEEecCCCcceeeeecc
Confidence 44332 2245567889999988 57778888888888753
No 305
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.52 E-value=8.6 Score=33.29 Aligned_cols=159 Identities=13% Similarity=0.108 Sum_probs=84.1
Q ss_pred CCceEEEcc--CCCeeEEec-------CCCEEEEEEcCCc-ceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEe
Q 018242 35 GPESLAFDA--LGEGPYTGV-------SDGRIIKWHQDQR-RWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFN 104 (359)
Q Consensus 35 ~p~~i~~~~--~G~~l~~~~-------~~~~i~~~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~ 104 (359)
+=+++.++| +++ |.+++ .+|+++.+++... ....+. .+ .......+++.+
T Consensus 10 ~GysvqfSPf~~nr-LavAt~q~yGl~G~G~L~ile~~~~~gi~e~~------------------s~-d~~D~LfdV~Ws 69 (311)
T KOG0277|consen 10 HGYSVQFSPFVENR-LAVATAQHYGLAGNGRLFILEVTDPKGIQECQ------------------SY-DTEDGLFDVAWS 69 (311)
T ss_pred ccceeEecccccch-hheeehhhcccccCceEEEEecCCCCCeEEEE------------------ee-ecccceeEeeec
Confidence 446677776 466 44333 3488999988532 122110 00 111224567777
Q ss_pred cCCCeEEEEeCCCc-EEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceE
Q 018242 105 KTNGDLYIADAYFG-LLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRL 183 (359)
Q Consensus 105 ~~~g~l~v~~~~~~-i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v 183 (359)
+...++.++..++| +..+|.. -...++.. .. .....+..+-..+..++.+++. ++.+.|
T Consensus 70 e~~e~~~~~a~GDGSLrl~d~~-~~s~Pi~~-~k-EH~~EV~Svdwn~~~r~~~lts-----------------SWD~Ti 129 (311)
T KOG0277|consen 70 ENHENQVIAASGDGSLRLFDLT-MPSKPIHK-FK-EHKREVYSVDWNTVRRRIFLTS-----------------SWDGTI 129 (311)
T ss_pred CCCcceEEEEecCceEEEeccC-CCCcchhH-HH-hhhhheEEeccccccceeEEee-----------------ccCCce
Confidence 64344444433444 6666632 11111111 00 0112233444444444355552 456777
Q ss_pred EEEeCCCC-cEEEEeCCCCCCceEEEccCCCEEEEEecCCCEEEEEEcCCC
Q 018242 184 MKYDPATK-QVTVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTS 233 (359)
Q Consensus 184 ~~~d~~~~-~~~~~~~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~ 233 (359)
-.+++.-. .+.++.+...-....+++|....++.+.+.++.+..||++.+
T Consensus 130 KLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~ 180 (311)
T KOG0277|consen 130 KLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSP 180 (311)
T ss_pred EeecCCCCcceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCC
Confidence 77887643 444444444445677888866668999999999999998644
No 306
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=91.48 E-value=7.9 Score=32.78 Aligned_cols=75 Identities=12% Similarity=0.209 Sum_probs=43.0
Q ss_pred EEEccCCCEEEEEecCCCEEEEEEcCCCCCcceeEeec-C--CC----CCCceEECCCCCEEEEEecCCCccccccccCC
Q 018242 206 VALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQ-L--PG----FPDNIKRSPRGGFWVGIHSRRKGISKLVLSFP 278 (359)
Q Consensus 206 ia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~-~--~~----~p~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~ 278 (359)
+++..=++.++++.+.+.+|.-||+.-+ .....+.+ . .+ -...+++||.|+|.++...... .-.++
T Consensus 187 lalyswn~~m~~sgsqdktirfwdlrv~--~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dss-----c~lyd 259 (350)
T KOG0641|consen 187 LALYSWNGAMFASGSQDKTIRFWDLRVN--SCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSS-----CMLYD 259 (350)
T ss_pred EEEEEecCcEEEccCCCceEEEEeeecc--ceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCc-----eEEEE
Confidence 4444434458899999999998987532 11222211 1 11 1234899999999997665443 33344
Q ss_pred c-cceeeecC
Q 018242 279 W-IGNVLIKL 287 (359)
Q Consensus 279 ~-~g~~~~~~ 287 (359)
. .|..+.++
T Consensus 260 irg~r~iq~f 269 (350)
T KOG0641|consen 260 IRGGRMIQRF 269 (350)
T ss_pred eeCCceeeee
Confidence 3 44444444
No 307
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=91.46 E-value=6.1 Score=35.19 Aligned_cols=151 Identities=17% Similarity=0.157 Sum_probs=82.7
Q ss_pred EEEEeCCCcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCC
Q 018242 110 LYIADAYFGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPA 189 (359)
Q Consensus 110 l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~ 189 (359)
+..+.+...-..+|.+++++...... .. ...+.+...|..+ |.++.+.. .+=.+|-|-+.
T Consensus 287 ~vTaSWDRTAnlwDVEtge~v~~LtG-Hd---~ELtHcstHptQr-LVvTsSrD---------------tTFRLWDFRea 346 (481)
T KOG0300|consen 287 MVTASWDRTANLWDVETGEVVNILTG-HD---SELTHCSTHPTQR-LVVTSSRD---------------TTFRLWDFREA 346 (481)
T ss_pred eeeeeccccceeeeeccCceeccccC-cc---hhccccccCCcce-EEEEeccC---------------ceeEeccchhh
Confidence 33334444466778888876443321 11 2345567778877 88874321 11123322221
Q ss_pred CCcEEEEeCCCCCCceEEEccCCCEEEEEecCCCEEEEEEcCCCCCcceeEeecCCCCCCceEECCCCCEEEEEecCCCc
Q 018242 190 TKQVTVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGGFWVGIHSRRKG 269 (359)
Q Consensus 190 ~~~~~~~~~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lwv~~~~~~~~ 269 (359)
=..+..+.++........|..|. ..|+.+++.+|.+|++..-... ...+ ......+.+++...+.+..--.+++.
T Consensus 347 I~sV~VFQGHtdtVTS~vF~~dd--~vVSgSDDrTvKvWdLrNMRsp-lATI-RtdS~~NRvavs~g~~iIAiPhDNRq- 421 (481)
T KOG0300|consen 347 IQSVAVFQGHTDTVTSVVFNTDD--RVVSGSDDRTVKVWDLRNMRSP-LATI-RTDSPANRVAVSKGHPIIAIPHDNRQ- 421 (481)
T ss_pred cceeeeecccccceeEEEEecCC--ceeecCCCceEEEeeeccccCc-ceee-ecCCccceeEeecCCceEEeccCCce-
Confidence 11222333333445566777666 4789999999999998653211 1111 11222355777664545444444554
Q ss_pred cccccccCCccceeeecCCc
Q 018242 270 ISKLVLSFPWIGNVLIKLPI 289 (359)
Q Consensus 270 ~~~~~~~~~~~g~~~~~~~~ 289 (359)
+..|+..|..+.++|-
T Consensus 422 ----vRlfDlnG~RlaRlPr 437 (481)
T KOG0300|consen 422 ----VRLFDLNGNRLARLPR 437 (481)
T ss_pred ----EEEEecCCCccccCCc
Confidence 7778888888888874
No 308
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=91.19 E-value=9.6 Score=34.08 Aligned_cols=156 Identities=8% Similarity=0.016 Sum_probs=90.0
Q ss_pred CCceEEEccCCCeeEEecCCCEEEEEEcCCcc-eEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEE
Q 018242 35 GPESLAFDALGEGPYTGVSDGRIIKWHQDQRR-WLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIA 113 (359)
Q Consensus 35 ~p~~i~~~~~G~~l~~~~~~~~i~~~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~ 113 (359)
.-.+.++.+|+..+.++..++.+..|...++. ++.+. .+........|+...+..++|.-+
T Consensus 12 pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~h------------------tls~Hd~~vtgvdWap~snrIvtc 73 (361)
T KOG1523|consen 12 PITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAH------------------TLSEHDKIVTGVDWAPKSNRIVTC 73 (361)
T ss_pred ceeeeeecCCCceEEeccCCceEEEEEecCCCCceece------------------ehhhhCcceeEEeecCCCCceeEc
Confidence 45689999999978888888888888776654 44332 233333446788888866777777
Q ss_pred eCCCcEEEEeC-CCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCCc
Q 018242 114 DAYFGLLKVGP-EGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQ 192 (359)
Q Consensus 114 ~~~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~ 192 (359)
...++-+.+.. ++++.++.....+ -......+.+.|+.+ .++.-++ .....|..|.-+..-
T Consensus 74 s~drnayVw~~~~~~~WkptlvLlR--iNrAAt~V~WsP~en-kFAVgSg---------------ar~isVcy~E~ENdW 135 (361)
T KOG1523|consen 74 SHDRNAYVWTQPSGGTWKPTLVLLR--INRAATCVKWSPKEN-KFAVGSG---------------ARLISVCYYEQENDW 135 (361)
T ss_pred cCCCCccccccCCCCeeccceeEEE--eccceeeEeecCcCc-eEEeccC---------------ccEEEEEEEecccce
Confidence 55555666665 6666543211000 112445678899988 6665332 223346666544321
Q ss_pred EEEEeCCCCCC-----ceEEEccCCCEEEEEecCCCEEEEEE
Q 018242 193 VTVLLGNLSFP-----NGVALSEDGNYILLAETTSCRILRYW 229 (359)
Q Consensus 193 ~~~~~~~~~~p-----~gia~~~d~~~l~v~~~~~~~i~~~~ 229 (359)
.+......| ..+.+.|.+- |..+.+.+....+|.
T Consensus 136 --WVsKhikkPirStv~sldWhpnnV-LlaaGs~D~k~rVfS 174 (361)
T KOG1523|consen 136 --WVSKHIKKPIRSTVTSLDWHPNNV-LLAAGSTDGKCRVFS 174 (361)
T ss_pred --ehhhhhCCccccceeeeeccCCcc-eecccccCcceeEEE
Confidence 122222223 5566666553 556666555555543
No 309
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=90.98 E-value=16 Score=35.28 Aligned_cols=99 Identities=18% Similarity=0.177 Sum_probs=57.9
Q ss_pred EEeCCCcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCC
Q 018242 112 IADAYFGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATK 191 (359)
Q Consensus 112 v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~ 191 (359)
.+..++.|..|+..+++++....... .....+.+....+-..||-+ +....+..+++...
T Consensus 75 lgt~~g~v~~ys~~~g~it~~~st~~--h~~~v~~~~~~~~~~ciyS~------------------~ad~~v~~~~~~~~ 134 (541)
T KOG4547|consen 75 LGTPQGSVLLYSVAGGEITAKLSTDK--HYGNVNEILDAQRLGCIYSV------------------GADLKVVYILEKEK 134 (541)
T ss_pred eecCCccEEEEEecCCeEEEEEecCC--CCCcceeeecccccCceEec------------------CCceeEEEEecccc
Confidence 34444558888888888765433111 11223333322222214433 22456778888766
Q ss_pred cEEEEe-CCCCCCceEEEccCCCEEEEEecCCCEEEEEEcCCC
Q 018242 192 QVTVLL-GNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTS 233 (359)
Q Consensus 192 ~~~~~~-~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~ 233 (359)
...... .....+..++++||++.|.++. .+|..|++...
T Consensus 135 ~~~~~~~~~~~~~~sl~is~D~~~l~~as---~~ik~~~~~~k 174 (541)
T KOG4547|consen 135 VIIRIWKEQKPLVSSLCISPDGKILLTAS---RQIKVLDIETK 174 (541)
T ss_pred eeeeeeccCCCccceEEEcCCCCEEEecc---ceEEEEEccCc
Confidence 555443 3345678999999999766653 67999987653
No 310
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=90.88 E-value=16 Score=35.17 Aligned_cols=113 Identities=14% Similarity=0.137 Sum_probs=67.0
Q ss_pred cceEEEEecCCCeEEEEeC--CCcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeee
Q 018242 97 RPLGLCFNKTNGDLYIADA--YFGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVI 174 (359)
Q Consensus 97 ~p~gi~~~~~~g~l~v~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~ 174 (359)
-.+.+.+++...+.-|+-. -..+..+|.++..+-.+ ..+ --|.+.++|.|+.|.++-.+
T Consensus 272 PVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~~v~df---~eg----pRN~~~fnp~g~ii~lAGFG------------ 332 (566)
T KOG2315|consen 272 PVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGKPVFDF---PEG----PRNTAFFNPHGNIILLAGFG------------ 332 (566)
T ss_pred CceEEEECCCCCEEEEEEecccceEEEEcCCCCEeEeC---CCC----CccceEECCCCCEEEEeecC------------
Confidence 3577888883334333321 13578888886543222 111 23678999999977777433
Q ss_pred eecCCCceEEEEeCCCCcEEEEeCCCCCCceEEEccCCCEEEEEecC-----CCEEEEEEcCC
Q 018242 175 LSGDKTGRLMKYDPATKQVTVLLGNLSFPNGVALSEDGNYILLAETT-----SCRILRYWLKT 232 (359)
Q Consensus 175 ~~~~~~g~v~~~d~~~~~~~~~~~~~~~p~gia~~~d~~~l~v~~~~-----~~~i~~~~~~~ 232 (359)
...|.+-.||..+.+.. .........-..++|||++++.+.+. ++++..|+..+
T Consensus 333 ---NL~G~mEvwDv~n~K~i-~~~~a~~tt~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG 391 (566)
T KOG2315|consen 333 ---NLPGDMEVWDVPNRKLI-AKFKAANTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTG 391 (566)
T ss_pred ---CCCCceEEEeccchhhc-cccccCCceEEEEcCCCcEEEEEeccccEEecCCeEEEEecC
Confidence 45677888887753221 11222334567889999987766554 35566666544
No 311
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=90.80 E-value=22 Score=36.61 Aligned_cols=140 Identities=11% Similarity=0.061 Sum_probs=69.4
Q ss_pred CeeEEecCCCEEEEEEcCCcceEE-EeecCC---CCCCCCCCcccccccccccCCcceEEEEecCCCeEEEEeC------
Q 018242 46 EGPYTGVSDGRIIKWHQDQRRWLH-FARTSP---NRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIADA------ 115 (359)
Q Consensus 46 ~~l~~~~~~~~i~~~d~~~~~~~~-~~~~~~---~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~~~------ 115 (359)
+++|+.+.+++|+.+|.++++... |..... +......+.+ . ......| .+. ++.++++..
T Consensus 261 ~rV~~~T~Dg~LiALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g----~-~~~ts~P---~V~--~g~VIvG~~v~d~~~ 330 (764)
T TIGR03074 261 RRIILPTSDARLIALDADTGKLCEDFGNNGTVDLTAGMGTTPPG----Y-YYPTSPP---LVA--GTTVVIGGRVADNYS 330 (764)
T ss_pred CEEEEecCCCeEEEEECCCCCEEEEecCCCceeeecccCcCCCc----c-cccccCC---EEE--CCEEEEEeccccccc
Confidence 358899999999999999886543 221000 0000000000 0 0001111 122 677887742
Q ss_pred ----CCcEEEEeCCCCeEEEEeecCC---------Cc--ccccc---ceEEEeCCCCEEEEEeCCC--ccccccceeeee
Q 018242 116 ----YFGLLKVGPEGGLATAVATQSE---------GI--PFRFC---NSLDIDQSTGIIYFTDSSS--QFQRRNHISVIL 175 (359)
Q Consensus 116 ----~~~i~~~~~~~~~~~~~~~~~~---------~~--~~~~~---~~l~~d~~g~~l~v~d~~~--~~~~~~~~~~~~ 175 (359)
.+.|..+|.++|+..-...... +. ....+ ..++.|++.+.+|+..... ++.... ....
T Consensus 331 ~~~~~G~I~A~Da~TGkl~W~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~--r~~~ 408 (764)
T TIGR03074 331 TDEPSGVIRAFDVNTGALVWAWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGD--RTPA 408 (764)
T ss_pred ccCCCcEEEEEECCCCcEeeEEecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCc--cccC
Confidence 1238889999998653222110 00 00111 2467888766578853211 111000 0000
Q ss_pred ecCCCceEEEEeCCCCcEEEEe
Q 018242 176 SGDKTGRLMKYDPATKQVTVLL 197 (359)
Q Consensus 176 ~~~~~g~v~~~d~~~~~~~~~~ 197 (359)
.....+.|+.+|++||+.+...
T Consensus 409 ~n~y~~slvALD~~TGk~~W~~ 430 (764)
T TIGR03074 409 DEKYSSSLVALDATTGKERWVF 430 (764)
T ss_pred cccccceEEEEeCCCCceEEEe
Confidence 1234568999999999988653
No 312
>PF00058 Ldl_recept_b: Low-density lipoprotein receptor repeat class B; InterPro: IPR000033 The low-density lipoprotein receptor (LDLR) is the major cholesterol-carrying lipoprotein of plasma, acting to regulate cholesterol homeostasis in mammalian cells. The LDL receptor binds LDL and transports it into cells by acidic endocytosis. In order to be internalized, the receptor-ligand complex must first cluster into clathrin-coated pits. Once inside the cell, the LDLR separates from its ligand, which is degraded in the lysosomes, while the receptor returns to the cell surface []. The internal dissociation of the LDLR with its ligand is mediated by proton pumps within the walls of the endosome that lower the pH. The LDLR is a multi-domain protein, containing: The ligand-binding domain contains seven or eight 40-amino acid LDLR class A (cysteine-rich) repeats, each of which contains a coordinated calcium ion and six cysteine residues involved in disulphide bond formation []. Similar domains have been found in other extracellular and membrane proteins []. The second conserved region contains two EGF repeats, followed by six LDLR class B (YWTD) repeats, and another EGF repeat. The LDLR class B repeats each contain a conserved YWTD motif, and is predicted to form a beta-propeller structure []. This region is critical for ligand release and recycling of the receptor []. The third domain is rich in serine and threonine residues and contains clustered O-linked carbohydrate chains. The fourth domain is the hydrophobic transmembrane region. The fifth domain is the cytoplasmic tail that directs the receptor to clathrin-coated pits. LDLR is closely related in structure to several other receptors, including LRP1, LRP1b, megalin/LRP2, VLDL receptor, lipoprotein receptor, MEGF7/LRP4, and LRP8/apolipoprotein E receptor2); these proteins participate in a wide range of physiological processes, including the regulation of lipid metabolism, protection against atherosclerosis, neurodevelopment, and transport of nutrients and vitamins []. This entry represents the LDLR classB (YWTD) repeat, the structure of which has been solved []. The six YWTD repeats together fold into a six-bladed beta-propeller. Each blade of the propeller consists of four antiparallel beta-strands; the innermost strand of each blade is labeled 1 and the outermost strand, 4. The sequence repeats are offset with respect to the blades of the propeller, such that any given 40-residue YWTD repeat spans strands 24 of one propeller blade and strand 1 of the subsequent blade. This offset ensures circularization of the propeller because the last strand of the final sequence repeat acts as an innermost strand 1 of the blade that harbors strands 24 from the first sequence repeat. The repeat is found in a variety of proteins that include, vitellogenin receptor from Drosophila melanogaster, low-density lipoprotein (LDL) receptor [], preproepidermal growth factor, and nidogen (entactin).; PDB: 3S2K_A 3S8Z_A 3S8V_B 4A0P_A 3SOB_B 3S94_B 4DG6_A 3SOV_A 3SOQ_A 1NPE_A ....
Probab=90.55 E-value=1.2 Score=26.91 Aligned_cols=39 Identities=21% Similarity=0.079 Sum_probs=28.3
Q ss_pred EEEEEecCCC-EEEEEEcCCCCCcceeEe-ecCCCCCCceEECC
Q 018242 214 YILLAETTSC-RILRYWLKTSKAGTIEIV-AQLPGFPDNIKRSP 255 (359)
Q Consensus 214 ~l~v~~~~~~-~i~~~~~~~~~~~~~~~~-~~~~~~p~~i~~d~ 255 (359)
.+||++...+ .|.+-++++.. .+.+ ...-..|.+|++|.
T Consensus 2 ~iYWtD~~~~~~I~~a~~dGs~---~~~vi~~~l~~P~giaVD~ 42 (42)
T PF00058_consen 2 KIYWTDWSQDPSIERANLDGSN---RRTVISDDLQHPEGIAVDW 42 (42)
T ss_dssp EEEEEETTTTEEEEEEETTSTS---EEEEEESSTSSEEEEEEET
T ss_pred EEEEEECCCCcEEEEEECCCCC---eEEEEECCCCCcCEEEECC
Confidence 5999999999 99999887643 3333 33334599999874
No 313
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=90.29 E-value=15 Score=33.89 Aligned_cols=83 Identities=11% Similarity=0.105 Sum_probs=49.8
Q ss_pred CceEEEEeCCCCcEEEEeCCCCCCceEEEccCCCEEEEEecCCCEEEEEEcCCCCCcceeEeecCCCCCCceEECCCCCE
Q 018242 180 TGRLMKYDPATKQVTVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGGF 259 (359)
Q Consensus 180 ~g~v~~~d~~~~~~~~~~~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l 259 (359)
...|..||..+++......+......+.|+.||. ++++...+..|.+||...++.-... ....+..|....+=.+|.+
T Consensus 153 Dn~v~iWnv~tgeali~l~hpd~i~S~sfn~dGs-~l~TtckDKkvRv~dpr~~~~v~e~-~~heG~k~~Raifl~~g~i 230 (472)
T KOG0303|consen 153 DNTVSIWNVGTGEALITLDHPDMVYSMSFNRDGS-LLCTTCKDKKVRVIDPRRGTVVSEG-VAHEGAKPARAIFLASGKI 230 (472)
T ss_pred CceEEEEeccCCceeeecCCCCeEEEEEeccCCc-eeeeecccceeEEEcCCCCcEeeec-ccccCCCcceeEEeccCce
Confidence 4578889998887654444333346788999997 6777778889999986543221111 0111223444455567775
Q ss_pred EEEEe
Q 018242 260 WVGIH 264 (359)
Q Consensus 260 wv~~~ 264 (359)
..+.+
T Consensus 231 ~tTGf 235 (472)
T KOG0303|consen 231 FTTGF 235 (472)
T ss_pred eeecc
Confidence 55444
No 314
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=90.28 E-value=13 Score=33.45 Aligned_cols=84 Identities=14% Similarity=0.177 Sum_probs=55.9
Q ss_pred CCCceEEEEeCCCCcEEE-EeCCCCCCceEEEccCCCEEEEEecCCCEEEEEEcCCCCCcceeEeecCCCCCC---ceEE
Q 018242 178 DKTGRLMKYDPATKQVTV-LLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPD---NIKR 253 (359)
Q Consensus 178 ~~~g~v~~~d~~~~~~~~-~~~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~---~i~~ 253 (359)
+..|.|..+|+.++++.. +.......+.|.+.|+.-.|+++.+.++.|..|++.... ..-++....+.-+ .+.+
T Consensus 112 G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~--Cv~VfGG~egHrdeVLSvD~ 189 (385)
T KOG1034|consen 112 GYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDV--CVAVFGGVEGHRDEVLSVDF 189 (385)
T ss_pred cceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCe--EEEEecccccccCcEEEEEE
Confidence 345778889998776543 334556678899999877799999999999999986542 2233333333222 2566
Q ss_pred CCCCCEEEEE
Q 018242 254 SPRGGFWVGI 263 (359)
Q Consensus 254 d~~G~lwv~~ 263 (359)
+.+|...++.
T Consensus 190 ~~~gd~i~Sc 199 (385)
T KOG1034|consen 190 SLDGDRIASC 199 (385)
T ss_pred cCCCCeeecc
Confidence 7788744433
No 315
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=90.26 E-value=2.9 Score=40.33 Aligned_cols=157 Identities=10% Similarity=0.090 Sum_probs=90.4
Q ss_pred EeeCCCCCCceEEEccCCCeeEEec-C---CCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEE
Q 018242 28 YQIEGAIGPESLAFDALGEGPYTGV-S---DGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCF 103 (359)
Q Consensus 28 ~~~~~~~~p~~i~~~~~G~~l~~~~-~---~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~ 103 (359)
+-+.-...-..+.+..+|. +++.. . +..|+..++.... .+. .+....+.+..+.|
T Consensus 516 ~~I~~~k~i~~vtWHrkGD-YlatV~~~~~~~~VliHQLSK~~-sQ~-------------------PF~kskG~vq~v~F 574 (733)
T KOG0650|consen 516 IVIKHPKSIRQVTWHRKGD-YLATVMPDSGNKSVLIHQLSKRK-SQS-------------------PFRKSKGLVQRVKF 574 (733)
T ss_pred EEEecCCccceeeeecCCc-eEEEeccCCCcceEEEEeccccc-ccC-------------------chhhcCCceeEEEe
Confidence 3333335677899999999 44433 2 2566666665431 110 22233355777889
Q ss_pred ecCCCeEEEEeCCCcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceE
Q 018242 104 NKTNGDLYIADAYFGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRL 183 (359)
Q Consensus 104 ~~~~g~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v 183 (359)
.|..-.++|++ +..|..||...+.+.. .... ....+..+++++.|..|.++ +...++
T Consensus 575 HPs~p~lfVaT-q~~vRiYdL~kqelvK--kL~t--g~kwiS~msihp~GDnli~g------------------s~d~k~ 631 (733)
T KOG0650|consen 575 HPSKPYLFVAT-QRSVRIYDLSKQELVK--KLLT--GSKWISSMSIHPNGDNLILG------------------SYDKKM 631 (733)
T ss_pred cCCCceEEEEe-ccceEEEehhHHHHHH--HHhc--CCeeeeeeeecCCCCeEEEe------------------cCCCee
Confidence 99788899987 5567888876443210 1111 12366789999988767777 334456
Q ss_pred EEEeCC--CCcEEEEeCCCCCCceEEEccCCCEEEEEecCCCEEEEEE
Q 018242 184 MKYDPA--TKQVTVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYW 229 (359)
Q Consensus 184 ~~~d~~--~~~~~~~~~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~ 229 (359)
.-+|.+ +.-.+.+..+-.....+++.+.-- |+.+.+.++.+.+|.
T Consensus 632 ~WfDldlsskPyk~lr~H~~avr~Va~H~ryP-Lfas~sdDgtv~Vfh 678 (733)
T KOG0650|consen 632 CWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYP-LFASGSDDGTVIVFH 678 (733)
T ss_pred EEEEcccCcchhHHhhhhhhhhhhhhhccccc-eeeeecCCCcEEEEe
Confidence 656654 222222222222345566654332 788888888888875
No 316
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=90.14 E-value=16 Score=33.98 Aligned_cols=128 Identities=15% Similarity=0.188 Sum_probs=55.5
Q ss_pred cEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCC-EEEEEeCCCccccccceeeeeecCCCceEEEEeCCCCcEEEE
Q 018242 118 GLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTG-IIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQVTVL 196 (359)
Q Consensus 118 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~-~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~ 196 (359)
+|+++|.++|+.+.+.... .....+.++|..- .|-++.-+ .|. .-..+|+.++.++.....+
T Consensus 169 ~i~~idl~tG~~~~v~~~~-----~wlgH~~fsP~dp~li~fCHEG-pw~-----------~Vd~RiW~i~~dg~~~~~v 231 (386)
T PF14583_consen 169 RIFTIDLKTGERKVVFEDT-----DWLGHVQFSPTDPTLIMFCHEG-PWD-----------LVDQRIWTINTDGSNVKKV 231 (386)
T ss_dssp EEEEEETTT--EEEEEEES-----S-EEEEEEETTEEEEEEEEE-S--TT-----------TSS-SEEEEETTS---EES
T ss_pred eEEEEECCCCceeEEEecC-----ccccCcccCCCCCCEEEEeccC-Ccc-----------eeceEEEEEEcCCCcceee
Confidence 5999999999887665421 2344555554322 13333111 010 1123688888776555554
Q ss_pred eCCCCC--CceEEEccCCCEEEE-EecCCC---EEEEEEcCCCCCcceeEeecCCCCCCceEECCCCCEEEEEecC
Q 018242 197 LGNLSF--PNGVALSEDGNYILL-AETTSC---RILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGGFWVGIHSR 266 (359)
Q Consensus 197 ~~~~~~--p~gia~~~d~~~l~v-~~~~~~---~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lwv~~~~~ 266 (359)
...... ...=-+.+||..++. .....+ .|..++++.. ..+.+...+. -.-...+++|+|+++....
T Consensus 232 ~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~---~~~~~~~~p~-~~H~~ss~Dg~L~vGDG~d 303 (386)
T PF14583_consen 232 HRRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTG---ERRRLMEMPW-CSHFMSSPDGKLFVGDGGD 303 (386)
T ss_dssp S---TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT-----EEEEEEE-S-EEEEEE-TTSSEEEEEE--
T ss_pred ecCCCCcccccccccCCCCEEEEEeecCCCCceEEEeeCCCCC---CceEEEeCCc-eeeeEEcCCCCEEEecCCC
Confidence 322110 011135678876443 443333 4555665432 2333333221 1124557899999988653
No 317
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=90.03 E-value=2 Score=40.84 Aligned_cols=101 Identities=18% Similarity=0.227 Sum_probs=66.9
Q ss_pred EEEEeeCCCCCCceEEEccCCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEe
Q 018242 25 VVQYQIEGAIGPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFN 104 (359)
Q Consensus 25 ~~~~~~~~~~~p~~i~~~~~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~ 104 (359)
+.+.+.++. .+..+++.+||+.|.+-..+|-+.++|-++.++.- .+....+....++++
T Consensus 283 v~~w~~~~g-~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg--------------------~mkSYFGGLLCvcWS 341 (636)
T KOG2394|consen 283 VARWHIGEG-SINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLG--------------------VMKSYFGGLLCVCWS 341 (636)
T ss_pred cceeEeccc-cccceeEcCCCceEEEEecCceEEEeeccHHHHHH--------------------HHHhhccceEEEEEc
Confidence 446666643 88999999999977777888999999988753211 233444566788999
Q ss_pred cCCCeEEEEeCCCc-EEEEeCCCCeEEEEeecCCCccccccceEEEeC
Q 018242 105 KTNGDLYIADAYFG-LLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQ 151 (359)
Q Consensus 105 ~~~g~l~v~~~~~~-i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~ 151 (359)
| ||+..+....+. +.++....+++... ..+ ...+++.+++||
T Consensus 342 P-DGKyIvtGGEDDLVtVwSf~erRVVAR---GqG-HkSWVs~VaFDp 384 (636)
T KOG2394|consen 342 P-DGKYIVTGGEDDLVTVWSFEERRVVAR---GQG-HKSWVSVVAFDP 384 (636)
T ss_pred C-CccEEEecCCcceEEEEEeccceEEEe---ccc-cccceeeEeecc
Confidence 9 677655533333 55677766654321 122 235788899985
No 318
>PF00058 Ldl_recept_b: Low-density lipoprotein receptor repeat class B; InterPro: IPR000033 The low-density lipoprotein receptor (LDLR) is the major cholesterol-carrying lipoprotein of plasma, acting to regulate cholesterol homeostasis in mammalian cells. The LDL receptor binds LDL and transports it into cells by acidic endocytosis. In order to be internalized, the receptor-ligand complex must first cluster into clathrin-coated pits. Once inside the cell, the LDLR separates from its ligand, which is degraded in the lysosomes, while the receptor returns to the cell surface []. The internal dissociation of the LDLR with its ligand is mediated by proton pumps within the walls of the endosome that lower the pH. The LDLR is a multi-domain protein, containing: The ligand-binding domain contains seven or eight 40-amino acid LDLR class A (cysteine-rich) repeats, each of which contains a coordinated calcium ion and six cysteine residues involved in disulphide bond formation []. Similar domains have been found in other extracellular and membrane proteins []. The second conserved region contains two EGF repeats, followed by six LDLR class B (YWTD) repeats, and another EGF repeat. The LDLR class B repeats each contain a conserved YWTD motif, and is predicted to form a beta-propeller structure []. This region is critical for ligand release and recycling of the receptor []. The third domain is rich in serine and threonine residues and contains clustered O-linked carbohydrate chains. The fourth domain is the hydrophobic transmembrane region. The fifth domain is the cytoplasmic tail that directs the receptor to clathrin-coated pits. LDLR is closely related in structure to several other receptors, including LRP1, LRP1b, megalin/LRP2, VLDL receptor, lipoprotein receptor, MEGF7/LRP4, and LRP8/apolipoprotein E receptor2); these proteins participate in a wide range of physiological processes, including the regulation of lipid metabolism, protection against atherosclerosis, neurodevelopment, and transport of nutrients and vitamins []. This entry represents the LDLR classB (YWTD) repeat, the structure of which has been solved []. The six YWTD repeats together fold into a six-bladed beta-propeller. Each blade of the propeller consists of four antiparallel beta-strands; the innermost strand of each blade is labeled 1 and the outermost strand, 4. The sequence repeats are offset with respect to the blades of the propeller, such that any given 40-residue YWTD repeat spans strands 24 of one propeller blade and strand 1 of the subsequent blade. This offset ensures circularization of the propeller because the last strand of the final sequence repeat acts as an innermost strand 1 of the blade that harbors strands 24 from the first sequence repeat. The repeat is found in a variety of proteins that include, vitellogenin receptor from Drosophila melanogaster, low-density lipoprotein (LDL) receptor [], preproepidermal growth factor, and nidogen (entactin).; PDB: 3S2K_A 3S8Z_A 3S8V_B 4A0P_A 3SOB_B 3S94_B 4DG6_A 3SOV_A 3SOQ_A 1NPE_A ....
Probab=89.98 E-value=1.6 Score=26.38 Aligned_cols=41 Identities=17% Similarity=0.111 Sum_probs=30.1
Q ss_pred CCeeEEecCCC-EEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEec
Q 018242 45 GEGPYTGVSDG-RIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNK 105 (359)
Q Consensus 45 G~~l~~~~~~~-~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~ 105 (359)
|+++|++.... .|.+-+.++...+.+ +......|.||++|+
T Consensus 1 ~~iYWtD~~~~~~I~~a~~dGs~~~~v--------------------i~~~l~~P~giaVD~ 42 (42)
T PF00058_consen 1 GKIYWTDWSQDPSIERANLDGSNRRTV--------------------ISDDLQHPEGIAVDW 42 (42)
T ss_dssp TEEEEEETTTTEEEEEEETTSTSEEEE--------------------EESSTSSEEEEEEET
T ss_pred CEEEEEECCCCcEEEEEECCCCCeEEE--------------------EECCCCCcCEEEECC
Confidence 45789999998 999999988654432 233456799999874
No 319
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=89.82 E-value=20 Score=35.99 Aligned_cols=149 Identities=11% Similarity=0.021 Sum_probs=85.8
Q ss_pred eeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEEeCCCc-EEEEeCC
Q 018242 47 GPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIADAYFG-LLKVGPE 125 (359)
Q Consensus 47 ~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~~~~~~-i~~~~~~ 125 (359)
++.++..+|.|..||....... +.+..+.......+.+.|.+..-++.++..++| |-.+|..
T Consensus 102 lIAT~s~nG~i~vWdlnk~~rn-----------------k~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR 164 (839)
T KOG0269|consen 102 LIATCSTNGVISVWDLNKSIRN-----------------KLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLR 164 (839)
T ss_pred hheeecCCCcEEEEecCccccc-----------------hhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeee
Confidence 4667778899999998752000 011123344455678888887888888877777 4457776
Q ss_pred CCeEEEEeecCCCccccccceEEEeCC-CCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCC-CcEE-EEeCCCCC
Q 018242 126 GGLATAVATQSEGIPFRFCNSLDIDQS-TGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPAT-KQVT-VLLGNLSF 202 (359)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~l~~d~~-g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~-~~~~-~~~~~~~~ 202 (359)
..+..... .+ ....+.++.+.|. ++ .|++- ...|.|.+||..- .+.+ .+..+...
T Consensus 165 ~~~S~~t~---~~-nSESiRDV~fsp~~~~-~F~s~-----------------~dsG~lqlWDlRqp~r~~~k~~AH~Gp 222 (839)
T KOG0269|consen 165 SKKSKSTF---RS-NSESIRDVKFSPGYGN-KFASI-----------------HDSGYLQLWDLRQPDRCEKKLTAHNGP 222 (839)
T ss_pred cccccccc---cc-cchhhhceeeccCCCc-eEEEe-----------------cCCceEEEeeccCchhHHHHhhcccCc
Confidence 54432211 11 2346778888865 44 55552 1245677788641 1111 11111111
Q ss_pred CceEEEccCCCEEEEEecCCCEEEEEEcCCCCC
Q 018242 203 PNGVALSEDGNYILLAETTSCRILRYWLKTSKA 235 (359)
Q Consensus 203 p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~ 235 (359)
..-+.+.|++. .+.++..+..|..|+..++..
T Consensus 223 V~c~nwhPnr~-~lATGGRDK~vkiWd~t~~~~ 254 (839)
T KOG0269|consen 223 VLCLNWHPNRE-WLATGGRDKMVKIWDMTDSRA 254 (839)
T ss_pred eEEEeecCCCc-eeeecCCCccEEEEeccCCCc
Confidence 23345668554 566666778899999876543
No 320
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.80 E-value=13 Score=32.33 Aligned_cols=157 Identities=10% Similarity=0.059 Sum_probs=84.2
Q ss_pred CceEEEccC-CCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEEe
Q 018242 36 PESLAFDAL-GEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIAD 114 (359)
Q Consensus 36 p~~i~~~~~-G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~~ 114 (359)
--++++.+. -..++++..+|.+..||..-. +. ++..+++...+...+.....+++.++..
T Consensus 63 LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~------------------s~-Pi~~~kEH~~EV~Svdwn~~~r~~~lts 123 (311)
T KOG0277|consen 63 LFDVAWSENHENQVIAASGDGSLRLFDLTMP------------------SK-PIHKFKEHKREVYSVDWNTVRRRIFLTS 123 (311)
T ss_pred eeEeeecCCCcceEEEEecCceEEEeccCCC------------------Cc-chhHHHhhhhheEEeccccccceeEEee
Confidence 335556554 235888899999999983211 11 1223444445566666666677777765
Q ss_pred CCCc-EEEEeCCCCe-EEEEeecCCCccccccceEEEeCC-CCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCC
Q 018242 115 AYFG-LLKVGPEGGL-ATAVATQSEGIPFRFCNSLDIDQS-TGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATK 191 (359)
Q Consensus 115 ~~~~-i~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~d~~-g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~ 191 (359)
..++ |-.+++.-.+ ++.+. + ....+...+++|. .+ ++.+.++ ...-+++-+... |
T Consensus 124 SWD~TiKLW~~~r~~Sv~Tf~----g-h~~~Iy~a~~sp~~~n-lfas~Sg---------------d~~l~lwdvr~~-g 181 (311)
T KOG0277|consen 124 SWDGTIKLWDPNRPNSVQTFN----G-HNSCIYQAAFSPHIPN-LFASASG---------------DGTLRLWDVRSP-G 181 (311)
T ss_pred ccCCceEeecCCCCcceEeec----C-CccEEEEEecCCCCCC-eEEEccC---------------CceEEEEEecCC-C
Confidence 5554 5556665332 22221 1 1234556667654 45 6666443 112234444333 4
Q ss_pred cEEEEeCCCCCCceEEEccCCCEEEEEecCCCEEEEEEcCCC
Q 018242 192 QVTVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTS 233 (359)
Q Consensus 192 ~~~~~~~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~ 233 (359)
+...+..+....--.-+++-+..++++...++.|..||+..-
T Consensus 182 k~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~ 223 (311)
T KOG0277|consen 182 KFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNL 223 (311)
T ss_pred ceeEEEeccceeEeecccccCCcEEEecCCCceEEEEehhhc
Confidence 444443222222222334545558888888899999998643
No 321
>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)
Probab=89.52 E-value=15 Score=33.00 Aligned_cols=39 Identities=28% Similarity=0.428 Sum_probs=29.7
Q ss_pred ccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCCcEEEEeCC
Q 018242 143 FCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQVTVLLGN 199 (359)
Q Consensus 143 ~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~ 199 (359)
.+|++..+++|+ +.|+-. ....|+++++++|++.....+
T Consensus 145 HiNsV~~~~~G~-yLiS~R-----------------~~~~i~~I~~~tG~I~W~lgG 183 (299)
T PF14269_consen 145 HINSVDKDDDGD-YLISSR-----------------NTSTIYKIDPSTGKIIWRLGG 183 (299)
T ss_pred EeeeeeecCCcc-EEEEec-----------------ccCEEEEEECCCCcEEEEeCC
Confidence 568888899999 777732 135799999999998877644
No 322
>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides. The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity
Probab=89.28 E-value=1.5 Score=31.20 Aligned_cols=40 Identities=13% Similarity=0.039 Sum_probs=32.0
Q ss_pred CEEEEeeCCCCCCceEEEccCCCeeEEec-CCCEEEEEEcC
Q 018242 24 GVVQYQIEGAIGPESLAFDALGEGPYTGV-SDGRIIKWHQD 63 (359)
Q Consensus 24 ~~~~~~~~~~~~p~~i~~~~~G~~l~~~~-~~~~i~~~d~~ 63 (359)
..++..+.++..|.||.++++++.+|++. ..+.|+.+...
T Consensus 44 ~~~~~va~g~~~aNGI~~s~~~k~lyVa~~~~~~I~vy~~~ 84 (86)
T PF01731_consen 44 KEVKVVASGFSFANGIAISPDKKYLYVASSLAHSIHVYKRH 84 (86)
T ss_pred CEeEEeeccCCCCceEEEcCCCCEEEEEeccCCeEEEEEec
Confidence 34677888899999999999999888765 55788887654
No 323
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=89.04 E-value=32 Score=35.99 Aligned_cols=79 Identities=15% Similarity=0.048 Sum_probs=35.5
Q ss_pred EEEeCCCCcEEEEeCC-CCCCceEEEccCCCEEEEEecCCCEEEEEEcCCCCCcceeEeecCCCCCCceEECCCCCEEEE
Q 018242 184 MKYDPATKQVTVLLGN-LSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGGFWVG 262 (359)
Q Consensus 184 ~~~d~~~~~~~~~~~~-~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lwv~ 262 (359)
|++-.++.+++.+... ...| -.|+.|-.+.++.+ .+..++.|++-..++.....+...+.....+.. ..-+++|+
T Consensus 917 yk~~~~g~~lellh~T~~~~~-v~Ai~~f~~~~Lag--vG~~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt-~~~RI~Vg 992 (1205)
T KOG1898|consen 917 YKFVRNGDKLELLHKTEIPGP-VGAICPFQGRVLAG--VGRFLRLYDLGKKKLLRKCELKFIPNRISSIQT-YGARIVVG 992 (1205)
T ss_pred EEEEecCceeeeeeccCCCcc-ceEEeccCCEEEEe--cccEEEEeeCChHHHHhhhhhccCceEEEEEee-cceEEEEe
Confidence 3333344455544322 2222 34566665544443 456899998743322111111112222222332 22367777
Q ss_pred EecC
Q 018242 263 IHSR 266 (359)
Q Consensus 263 ~~~~ 266 (359)
+...
T Consensus 993 D~qe 996 (1205)
T KOG1898|consen 993 DIQE 996 (1205)
T ss_pred eccc
Confidence 7653
No 324
>COG4247 Phy 3-phytase (myo-inositol-hexaphosphate 3-phosphohydrolase) [Lipid metabolism]
Probab=88.59 E-value=16 Score=31.82 Aligned_cols=86 Identities=17% Similarity=0.298 Sum_probs=50.9
Q ss_pred ceEEEEeCCCCcEEEEeC-------CCCCCceEEEccCCC----EEEEEecCCCEEEEEEcCCCCCccee--Eee--cCC
Q 018242 181 GRLMKYDPATKQVTVLLG-------NLSFPNGVALSEDGN----YILLAETTSCRILRYWLKTSKAGTIE--IVA--QLP 245 (359)
Q Consensus 181 g~v~~~d~~~~~~~~~~~-------~~~~p~gia~~~d~~----~l~v~~~~~~~i~~~~~~~~~~~~~~--~~~--~~~ 245 (359)
-.+|.+||+.+.++.+.. ....+.|+++..+.+ +.+|+. ..+-+..|.+-....+... .+. .++
T Consensus 126 i~~y~Idp~~~~L~sitD~n~p~ss~~s~~YGl~lyrs~ktgd~yvfV~~-~qG~~~Qy~l~d~gnGkv~~k~vR~fk~~ 204 (364)
T COG4247 126 IVFYKIDPNPQYLESITDSNAPYSSSSSSAYGLALYRSPKTGDYYVFVNR-RQGDIAQYKLIDQGNGKVGTKLVRQFKIP 204 (364)
T ss_pred EEEEEeCCCccceeeccCCCCccccCcccceeeEEEecCCcCcEEEEEec-CCCceeEEEEEecCCceEcceeeEeeecC
Confidence 358889998877765432 235578999976543 244444 3467777877433222211 111 134
Q ss_pred CCCCceEECC-CCCEEEEEecCC
Q 018242 246 GFPDNIKRSP-RGGFWVGIHSRR 267 (359)
Q Consensus 246 ~~p~~i~~d~-~G~lwv~~~~~~ 267 (359)
....|+..|. -|.||++.....
T Consensus 205 tQTEG~VaDdEtG~LYIaeEdva 227 (364)
T COG4247 205 TQTEGMVADDETGFLYIAEEDVA 227 (364)
T ss_pred CcccceeeccccceEEEeeccce
Confidence 4466776655 689999987643
No 325
>KOG1215 consensus Low-density lipoprotein receptors containing Ca2+-binding EGF-like domains [Signal transduction mechanisms]
Probab=88.40 E-value=36 Score=35.79 Aligned_cols=195 Identities=15% Similarity=0.177 Sum_probs=109.6
Q ss_pred EeeCCCCCCceEEEcc-CCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecC
Q 018242 28 YQIEGAIGPESLAFDA-LGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKT 106 (359)
Q Consensus 28 ~~~~~~~~p~~i~~~~-~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~ 106 (359)
++..+...+..+.++. .+.++|.......+..-...+..... ........+.++++|-.
T Consensus 431 ~p~~~~~~~~~~d~d~~~~~i~~~d~~~~~i~~~~~~~~~~~~--------------------~~~~g~~~~~~lavD~~ 490 (877)
T KOG1215|consen 431 RPLEGIKNAVALDFDVLNNRIYWADLSDEKICRASQDGSSECE--------------------LCGDGLCIPEGLAVDWI 490 (877)
T ss_pred EEccCCccceEEEEEecCCEEEEEeccCCeEeeeccCCCccce--------------------EeccCccccCcEEEEec
Confidence 3344333444555543 34556777777777776655442111 01222345779999988
Q ss_pred CCeEEEEeCCC-cEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEE
Q 018242 107 NGDLYIADAYF-GLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMK 185 (359)
Q Consensus 107 ~g~l~v~~~~~-~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~ 185 (359)
.+++|.++... .+...+.++..-..+... ....+..++++|....+|.++.+. . . .+.+
T Consensus 491 ~~~~y~tDe~~~~i~v~~~~g~~~~vl~~~----~l~~~r~~~v~p~~g~~~wtd~~~-~--------------~-~i~r 550 (877)
T KOG1215|consen 491 GDNIYWTDEGNCLIEVADLDGSSRKVLVSK----DLDLPRSIAVDPEKGLMFWTDWGQ-P--------------P-RIER 550 (877)
T ss_pred cCCceecccCCceeEEEEccCCceeEEEec----CCCCccceeeccccCeeEEecCCC-C--------------c-hhhh
Confidence 89999887654 355555554432222221 114677899998876699987652 1 1 2333
Q ss_pred EeCCCCcEEE-EeCCCCCCceEEEccCCCEEEEEecCCC-EEEEEEcCCCCCcceeEeecCCCCCCceEECCCCCEEEEE
Q 018242 186 YDPATKQVTV-LLGNLSFPNGVALSEDGNYILLAETTSC-RILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGGFWVGI 263 (359)
Q Consensus 186 ~d~~~~~~~~-~~~~~~~p~gia~~~d~~~l~v~~~~~~-~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lwv~~ 263 (359)
-..+...... +..+...|+|++++-..+.+||.+.... .+...+.++.... .........|.++++-. +++|-..
T Consensus 551 a~~dg~~~~~l~~~~~~~p~glt~d~~~~~~yw~d~~~~~~i~~~~~~g~~r~--~~~~~~~~~p~~~~~~~-~~iyw~d 627 (877)
T KOG1215|consen 551 ASLDGSERAVLVTNGILWPNGLTIDYETDRLYWADAKLDYTIESANMDGQNRR--VVDSEDLPHPFGLSVFE-DYIYWTD 627 (877)
T ss_pred hcCCCCCceEEEeCCccCCCcceEEeecceeEEEcccCCcceeeeecCCCceE--EeccccCCCceEEEEec-ceeEEee
Confidence 3333222222 2334578999999977777999998887 6777776554221 11111223366666532 3455444
Q ss_pred ec
Q 018242 264 HS 265 (359)
Q Consensus 264 ~~ 265 (359)
+.
T Consensus 628 ~~ 629 (877)
T KOG1215|consen 628 WS 629 (877)
T ss_pred cc
Confidence 43
No 326
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=87.99 E-value=19 Score=32.04 Aligned_cols=214 Identities=12% Similarity=0.060 Sum_probs=108.3
Q ss_pred eEEEccCCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCe--EEEE-e
Q 018242 38 SLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGD--LYIA-D 114 (359)
Q Consensus 38 ~i~~~~~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~--l~v~-~ 114 (359)
++++..||..+|++.-++.+..||+.+++..++... ......+.+-+ ..+ +.++ .
T Consensus 77 ~v~WsddgskVf~g~~Dk~~k~wDL~S~Q~~~v~~H---------------------d~pvkt~~wv~-~~~~~cl~TGS 134 (347)
T KOG0647|consen 77 DVCWSDDGSKVFSGGCDKQAKLWDLASGQVSQVAAH---------------------DAPVKTCHWVP-GMNYQCLVTGS 134 (347)
T ss_pred EEEEccCCceEEeeccCCceEEEEccCCCeeeeeec---------------------ccceeEEEEec-CCCcceeEecc
Confidence 889999999899999999999999999877666421 11122343333 222 3333 4
Q ss_pred CCCcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCC--c
Q 018242 115 AYFGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATK--Q 192 (359)
Q Consensus 115 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~--~ 192 (359)
+...|-.+|+..... +.. ...| ++ .|..|-... +... ....-+|..|+.+.+ +
T Consensus 135 WDKTlKfWD~R~~~p--v~t------~~LP--------eR-vYa~Dv~~p-------m~vV-ata~r~i~vynL~n~~te 189 (347)
T KOG0647|consen 135 WDKTLKFWDTRSSNP--VAT------LQLP--------ER-VYAADVLYP-------MAVV-ATAERHIAVYNLENPPTE 189 (347)
T ss_pred cccceeecccCCCCe--eee------eecc--------ce-eeehhccCc-------eeEE-EecCCcEEEEEcCCCcch
Confidence 444566777764321 111 0011 11 222221100 0000 001124666666433 2
Q ss_pred EEEEeCCCC-CCceEEEccCCCEEEEEecCCCEEEEEEcCCCCCcceeEee-c-CCC-------CCCceEECCCCCEEEE
Q 018242 193 VTVLLGNLS-FPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVA-Q-LPG-------FPDNIKRSPRGGFWVG 262 (359)
Q Consensus 193 ~~~~~~~~~-~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~-~-~~~-------~p~~i~~d~~G~lwv~ 262 (359)
++.....+. ..+.+++.+|.+ .+..++-.+++....++.++...-=.|. . ..+ -.+.|++-+.-..+++
T Consensus 190 ~k~~~SpLk~Q~R~va~f~d~~-~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvT 268 (347)
T KOG0647|consen 190 FKRIESPLKWQTRCVACFQDKD-GFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVT 268 (347)
T ss_pred hhhhcCcccceeeEEEEEecCC-ceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEeecccceEEE
Confidence 222222222 346778877766 4666677788888877754221110111 1 001 1245788775556665
Q ss_pred EecCCCccccccccCCcc-ceeeecCCccceeeeeecccccCc
Q 018242 263 IHSRRKGISKLVLSFPWI-GNVLIKLPIDIVKIHSSLVKLSGN 304 (359)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~ 304 (359)
....+. ...++.+ +.-++..+...+.+++|.+..+..
T Consensus 269 aGsDGt-----f~FWDkdar~kLk~s~~~~qpItcc~fn~~G~ 306 (347)
T KOG0647|consen 269 AGSDGT-----FSFWDKDARTKLKTSETHPQPITCCSFNRNGS 306 (347)
T ss_pred ecCCce-----EEEecchhhhhhhccCcCCCccceeEecCCCC
Confidence 555443 4445653 334555455555666666555444
No 327
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=87.94 E-value=7.6 Score=35.08 Aligned_cols=117 Identities=11% Similarity=0.093 Sum_probs=67.5
Q ss_pred eEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCCcEE-EEeCCCCCCceEEEccCCCEEEEEecCCCE
Q 018242 146 SLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQVT-VLLGNLSFPNGVALSEDGNYILLAETTSCR 224 (359)
Q Consensus 146 ~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~-~~~~~~~~p~gia~~~d~~~l~v~~~~~~~ 224 (359)
-++.+-+.+ +.|+-++ ...|..+|.++++.. ++.++-...-++.|+. | ..++.+.+..
T Consensus 240 VLCLqyd~r-viisGSS-----------------DsTvrvWDv~tge~l~tlihHceaVLhlrf~n-g--~mvtcSkDrs 298 (499)
T KOG0281|consen 240 VLCLQYDER-VIVSGSS-----------------DSTVRVWDVNTGEPLNTLIHHCEAVLHLRFSN-G--YMVTCSKDRS 298 (499)
T ss_pred EEeeeccce-EEEecCC-----------------CceEEEEeccCCchhhHHhhhcceeEEEEEeC-C--EEEEecCCce
Confidence 356666777 8777333 457888998887643 2334444556777753 3 7888899999
Q ss_pred EEEEEcCCCCCcc-eeEeecCCCCCCceEECCCCCEEEEEecCCCccccccccCC-ccceeeecCCcc
Q 018242 225 ILRYWLKTSKAGT-IEIVAQLPGFPDNIKRSPRGGFWVGIHSRRKGISKLVLSFP-WIGNVLIKLPID 290 (359)
Q Consensus 225 i~~~~~~~~~~~~-~~~~~~~~~~p~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~ 290 (359)
+.+|+++.+...+ ..++...-.-.+-+.+| .++.|+..+.+. +..++ .+++.++.+...
T Consensus 299 iaVWdm~sps~it~rrVLvGHrAaVNvVdfd--~kyIVsASgDRT-----ikvW~~st~efvRtl~gH 359 (499)
T KOG0281|consen 299 IAVWDMASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSASGDRT-----IKVWSTSTCEFVRTLNGH 359 (499)
T ss_pred eEEEeccCchHHHHHHHHhhhhhheeeeccc--cceEEEecCCce-----EEEEeccceeeehhhhcc
Confidence 9999987653211 11121111112223443 456666666654 55544 356666665544
No 328
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=87.79 E-value=7.3 Score=38.68 Aligned_cols=114 Identities=16% Similarity=0.080 Sum_probs=71.3
Q ss_pred ceEEEEecCCCeEEEEeCCCcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeec
Q 018242 98 PLGLCFNKTNGDLYIADAYFGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSG 177 (359)
Q Consensus 98 p~gi~~~~~~g~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~ 177 (359)
.+.|+++|..+.+.++--...|..|+...++-+.......+ ....+--+..||.| +|++.+-+
T Consensus 599 lYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~-~eG~lIKv~lDPSg--iY~atScs-------------- 661 (1080)
T KOG1408|consen 599 LYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRD-HEGDLIKVILDPSG--IYLATSCS-------------- 661 (1080)
T ss_pred EEEeeeCCCcceEEEEecccceEEEeccccceeeeeccccc-CCCceEEEEECCCc--cEEEEeec--------------
Confidence 45788888445554443334588899988765433221111 12345567889999 57775432
Q ss_pred CCCceEEEEeCCCCcEEEE-eCCCCCCceEEEccCCCEEEEEecCCCEEEEEEcC
Q 018242 178 DKTGRLMKYDPATKQVTVL-LGNLSFPNGVALSEDGNYILLAETTSCRILRYWLK 231 (359)
Q Consensus 178 ~~~g~v~~~d~~~~~~~~~-~~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~ 231 (359)
.-.+-.+|-.+++.... .++.....|+.|.+|=++|+ +-+.+++|++|.+.
T Consensus 662 --dktl~~~Df~sgEcvA~m~GHsE~VTG~kF~nDCkHlI-SvsgDgCIFvW~lp 713 (1080)
T KOG1408|consen 662 --DKTLCFVDFVSGECVAQMTGHSEAVTGVKFLNDCKHLI-SVSGDGCIFVWKLP 713 (1080)
T ss_pred --CCceEEEEeccchhhhhhcCcchheeeeeecccchhhe-eecCCceEEEEECc
Confidence 12466666666766532 34456678999999988654 44678899999864
No 329
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=87.61 E-value=21 Score=32.30 Aligned_cols=59 Identities=15% Similarity=0.259 Sum_probs=35.4
Q ss_pred CEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEEeCC-----CcEEEEeCCCCeE
Q 018242 55 GRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIADAY-----FGLLKVGPEGGLA 129 (359)
Q Consensus 55 ~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~~~~-----~~i~~~~~~~~~~ 129 (359)
..+++||+.+++|+..... ... .+....+..- +++||+.... ..+.+||+++.++
T Consensus 139 ~~v~~yd~~~~~W~~~~~~------------------p~~-~r~~~~~~~~-~~~iYv~GG~~~~~~~~~~~yd~~~~~W 198 (323)
T TIGR03548 139 NKSYLFNLETQEWFELPDF------------------PGE-PRVQPVCVKL-QNELYVFGGGSNIAYTDGYKYSPKKNQW 198 (323)
T ss_pred ceEEEEcCCCCCeeECCCC------------------CCC-CCCcceEEEE-CCEEEEEcCCCCccccceEEEecCCCee
Confidence 4689999999888765311 000 1111222223 6788886432 1367899999888
Q ss_pred EEEe
Q 018242 130 TAVA 133 (359)
Q Consensus 130 ~~~~ 133 (359)
+.+.
T Consensus 199 ~~~~ 202 (323)
T TIGR03548 199 QKVA 202 (323)
T ss_pred EECC
Confidence 7654
No 330
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.61 E-value=3.7 Score=42.52 Aligned_cols=160 Identities=14% Similarity=0.169 Sum_probs=90.8
Q ss_pred eEEEccCCC-eeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEEeCC
Q 018242 38 SLAFDALGE-GPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIADAY 116 (359)
Q Consensus 38 ~i~~~~~G~-~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~~~~ 116 (359)
++.|.+.+. ++-.+..+|.|+.||.+.-+ +.+ ++ .......+...+.+..+..+++.+...
T Consensus 121 gLDfN~~q~nlLASGa~~geI~iWDlnn~~-tP~-----~~------------~~~~~~~eI~~lsWNrkvqhILAS~s~ 182 (1049)
T KOG0307|consen 121 GLDFNPFQGNLLASGADDGEILIWDLNKPE-TPF-----TP------------GSQAPPSEIKCLSWNRKVSHILASGSP 182 (1049)
T ss_pred eeeccccCCceeeccCCCCcEEEeccCCcC-CCC-----CC------------CCCCCcccceEeccchhhhHHhhccCC
Confidence 678887654 67777888999999987531 111 00 001112234456666655667666443
Q ss_pred C-cEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCC-EEEEEeCCCccccccceeeeeecCCCceEEEEeCCCC--c
Q 018242 117 F-GLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTG-IIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATK--Q 192 (359)
Q Consensus 117 ~-~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~-~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~--~ 192 (359)
. ....+|.+..+ .+............+.|.++|++. +|+++... ...-.|..+|..-- -
T Consensus 183 sg~~~iWDlr~~~--pii~ls~~~~~~~~S~l~WhP~~aTql~~As~d---------------d~~PviqlWDlR~assP 245 (1049)
T KOG0307|consen 183 SGRAVIWDLRKKK--PIIKLSDTPGRMHCSVLAWHPDHATQLLVASGD---------------DSAPVIQLWDLRFASSP 245 (1049)
T ss_pred CCCceeccccCCC--cccccccCCCccceeeeeeCCCCceeeeeecCC---------------CCCceeEeecccccCCc
Confidence 3 57778887553 222211111113567899999976 46666221 11235666773210 1
Q ss_pred EEEEeCCCCCCceEEEccCCCEEEEEecCCCEEEEEEcCC
Q 018242 193 VTVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKT 232 (359)
Q Consensus 193 ~~~~~~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~ 232 (359)
++.+..+-.+.-++.+++.+..+.++.-.++++..|+...
T Consensus 246 ~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~t 285 (1049)
T KOG0307|consen 246 LKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNT 285 (1049)
T ss_pred hhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCC
Confidence 1122233455567777776656788888889999998654
No 331
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=87.21 E-value=25 Score=32.72 Aligned_cols=157 Identities=11% Similarity=0.121 Sum_probs=87.6
Q ss_pred ceEEEccCCCeeEEe-cCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEEeC
Q 018242 37 ESLAFDALGEGPYTG-VSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIADA 115 (359)
Q Consensus 37 ~~i~~~~~G~~l~~~-~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~~~ 115 (359)
+++++.+...-+|.+ ..++.+..||..+++-+ .. ..........+.++|.|-++.++.+..
T Consensus 231 eDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~---------------~~---~~~~ah~~~vn~~~fnp~~~~ilAT~S 292 (422)
T KOG0264|consen 231 EDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSK---------------PS---HSVKAHSAEVNCVAFNPFNEFILATGS 292 (422)
T ss_pred ehhhccccchhhheeecCCCeEEEEEcCCCCCC---------------Cc---ccccccCCceeEEEeCCCCCceEEecc
Confidence 345555544335544 45588999998742000 00 012223345678899997777766543
Q ss_pred -CCcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCC-CcE
Q 018242 116 -YFGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPAT-KQV 193 (359)
Q Consensus 116 -~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~-~~~ 193 (359)
.+.|..+|+..=.. .+.. ..+ ....+..+.++|....+..+ ++ ..+.+.++|... ++.
T Consensus 293 ~D~tV~LwDlRnL~~-~lh~-~e~-H~dev~~V~WSPh~etvLAS-Sg----------------~D~rl~vWDls~ig~e 352 (422)
T KOG0264|consen 293 ADKTVALWDLRNLNK-PLHT-FEG-HEDEVFQVEWSPHNETVLAS-SG----------------TDRRLNVWDLSRIGEE 352 (422)
T ss_pred CCCcEEEeechhccc-Ccee-ccC-CCcceEEEEeCCCCCceeEe-cc----------------cCCcEEEEeccccccc
Confidence 44688888864321 1111 111 12356678888887745444 22 244566666542 111
Q ss_pred E-----------E-Ee--CCCCCCceEEEccCCCEEEEEecCCCEEEEEEcC
Q 018242 194 T-----------V-LL--GNLSFPNGVALSEDGNYILLAETTSCRILRYWLK 231 (359)
Q Consensus 194 ~-----------~-~~--~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~ 231 (359)
+ . +. ++....+.+.++|..-+++.+-+.++.+.+|.+.
T Consensus 353 q~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s 404 (422)
T KOG0264|consen 353 QSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMA 404 (422)
T ss_pred cChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeecc
Confidence 1 0 11 1123345677788777888888888888888765
No 332
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=87.20 E-value=30 Score=33.46 Aligned_cols=123 Identities=13% Similarity=0.109 Sum_probs=68.2
Q ss_pred eeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEEeCCCcEEEEeCCC
Q 018242 47 GPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIADAYFGLLKVGPEG 126 (359)
Q Consensus 47 ~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~~~~~~i~~~~~~~ 126 (359)
.+..+++.|.|..|+...++.+.+-....+ .+....+.-..+-+.+|-+.....+..++++.
T Consensus 72 ~lvlgt~~g~v~~ys~~~g~it~~~st~~h------------------~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~ 133 (541)
T KOG4547|consen 72 MLVLGTPQGSVLLYSVAGGEITAKLSTDKH------------------YGNVNEILDAQRLGCIYSVGADLKVVYILEKE 133 (541)
T ss_pred EEEeecCCccEEEEEecCCeEEEEEecCCC------------------CCcceeeecccccCceEecCCceeEEEEeccc
Confidence 355677888899888887766654321111 11111221122234455444333577778777
Q ss_pred CeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCCcEEEEeCCCCC-Cce
Q 018242 127 GLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQVTVLLGNLSF-PNG 205 (359)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~-p~g 205 (359)
.+....... ....+..+++.+||. +.++- ...|-.+|.+++++....++-.. .+-
T Consensus 134 ~~~~~~~~~----~~~~~~sl~is~D~~-~l~~a-------------------s~~ik~~~~~~kevv~~ftgh~s~v~t 189 (541)
T KOG4547|consen 134 KVIIRIWKE----QKPLVSSLCISPDGK-ILLTA-------------------SRQIKVLDIETKEVVITFTGHGSPVRT 189 (541)
T ss_pred ceeeeeecc----CCCccceEEEcCCCC-EEEec-------------------cceEEEEEccCceEEEEecCCCcceEE
Confidence 665443321 113567899999999 55541 23577788887777655544333 345
Q ss_pred EEEccC
Q 018242 206 VALSED 211 (359)
Q Consensus 206 ia~~~d 211 (359)
+.|..+
T Consensus 190 ~~f~~~ 195 (541)
T KOG4547|consen 190 LSFTTL 195 (541)
T ss_pred EEEEEe
Confidence 555443
No 333
>COG4247 Phy 3-phytase (myo-inositol-hexaphosphate 3-phosphohydrolase) [Lipid metabolism]
Probab=87.16 E-value=19 Score=31.28 Aligned_cols=31 Identities=16% Similarity=0.407 Sum_probs=21.8
Q ss_pred CCceEEEccCCCEEEEEecCCCEEEEEEcCCC
Q 018242 202 FPNGVALSEDGNYILLAETTSCRILRYWLKTS 233 (359)
Q Consensus 202 ~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~ 233 (359)
...|+..+..-..||+++. +-.||+|...++
T Consensus 206 QTEG~VaDdEtG~LYIaeE-dvaiWK~~Aep~ 236 (364)
T COG4247 206 QTEGMVADDETGFLYIAEE-DVAIWKYEAEPN 236 (364)
T ss_pred cccceeeccccceEEEeec-cceeeecccCCC
Confidence 4567777655556999975 468999987644
No 334
>PLN02153 epithiospecifier protein
Probab=87.11 E-value=24 Score=32.30 Aligned_cols=119 Identities=12% Similarity=0.065 Sum_probs=56.8
Q ss_pred CEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEEeCC------CcEEEEeCCCCe
Q 018242 55 GRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIADAY------FGLLKVGPEGGL 128 (359)
Q Consensus 55 ~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~~~~------~~i~~~~~~~~~ 128 (359)
..+++||+.+.+|+...... ........-+.++.. ++.||+.... +.+.+||+++.+
T Consensus 50 ~~~~~yd~~~~~W~~~~~~~---------------~~p~~~~~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~t~~ 112 (341)
T PLN02153 50 KDLYVFDFNTHTWSIAPANG---------------DVPRISCLGVRMVAV--GTKLYIFGGRDEKREFSDFYSYDTVKNE 112 (341)
T ss_pred CcEEEEECCCCEEEEcCccC---------------CCCCCccCceEEEEE--CCEEEEECCCCCCCccCcEEEEECCCCE
Confidence 35889999998887543110 000000001122222 6788876321 248899999988
Q ss_pred EEEEeecC-CCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCCcEEEEe
Q 018242 129 ATAVATQS-EGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQVTVLL 197 (359)
Q Consensus 129 ~~~~~~~~-~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~ 197 (359)
++.+.... ...+.......++.-+++ |||.--.... ... ........|.+||+++.+...+.
T Consensus 113 W~~~~~~~~~~~p~~R~~~~~~~~~~~-iyv~GG~~~~---~~~---~~~~~~~~v~~yd~~~~~W~~l~ 175 (341)
T PLN02153 113 WTFLTKLDEEGGPEARTFHSMASDENH-VYVFGGVSKG---GLM---KTPERFRTIEAYNIADGKWVQLP 175 (341)
T ss_pred EEEeccCCCCCCCCCceeeEEEEECCE-EEEECCccCC---Ccc---CCCcccceEEEEECCCCeEeeCC
Confidence 87653210 011111112222334566 8886211000 000 00001235888999887766543
No 335
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=86.78 E-value=23 Score=31.73 Aligned_cols=72 Identities=11% Similarity=0.207 Sum_probs=47.0
Q ss_pred ccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEE-EeCCCCcEE-EEeCCC--CCCceEEEccCCCEEEEE
Q 018242 143 FCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMK-YDPATKQVT-VLLGNL--SFPNGVALSEDGNYILLA 218 (359)
Q Consensus 143 ~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~-~d~~~~~~~-~~~~~~--~~p~gia~~~d~~~l~v~ 218 (359)
.+.-++...+|. +..+- +..|++.| ||..+|+.. .+..+. ....-|+|+|+..+|-+
T Consensus 183 ~Iacv~Ln~~Gt-~vATa-----------------StkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s~Lav- 243 (346)
T KOG2111|consen 183 DIACVALNLQGT-LVATA-----------------STKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSSWLAV- 243 (346)
T ss_pred ceeEEEEcCCcc-EEEEe-----------------ccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCccEEEE-
Confidence 445577888897 65552 23466665 777776543 233332 23457899999985554
Q ss_pred ecCCCEEEEEEcCCC
Q 018242 219 ETTSCRILRYWLKTS 233 (359)
Q Consensus 219 ~~~~~~i~~~~~~~~ 233 (359)
.++.++|..|.+.+.
T Consensus 244 sSdKgTlHiF~l~~~ 258 (346)
T KOG2111|consen 244 SSDKGTLHIFSLRDT 258 (346)
T ss_pred EcCCCeEEEEEeecC
Confidence 467899999998654
No 336
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=86.53 E-value=35 Score=33.58 Aligned_cols=204 Identities=17% Similarity=0.172 Sum_probs=110.8
Q ss_pred eeCCCCCCceEEEccCCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCC
Q 018242 29 QIEGAIGPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNG 108 (359)
Q Consensus 29 ~~~~~~~p~~i~~~~~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g 108 (359)
..+-..+=+++++..-+..++.+..+..+..||..+++=... +. ++...+.+++. .+
T Consensus 245 l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~--------------------l~--gh~stv~~~~~-~~ 301 (537)
T KOG0274|consen 245 LVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTHS--------------------LQ--GHTSSVRCLTI-DP 301 (537)
T ss_pred ccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEEEE--------------------ec--CCCceEEEEEc-cC
Confidence 344455667888877566688999999999999877732211 11 12233444454 34
Q ss_pred eEEEE-eCCCcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEe
Q 018242 109 DLYIA-DAYFGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYD 187 (359)
Q Consensus 109 ~l~v~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d 187 (359)
.+.++ .....|..++..+++...+.. + ....++.+..+ +. +.|+- +..+.|..|+
T Consensus 302 ~~~~sgs~D~tVkVW~v~n~~~l~l~~---~-h~~~V~~v~~~--~~-~lvsg-----------------s~d~~v~VW~ 357 (537)
T KOG0274|consen 302 FLLVSGSRDNTVKVWDVTNGACLNLLR---G-HTGPVNCVQLD--EP-LLVSG-----------------SYDGTVKVWD 357 (537)
T ss_pred ceEeeccCCceEEEEeccCcceEEEec---c-ccccEEEEEec--CC-EEEEE-----------------ecCceEEEEE
Confidence 44444 334458888888776544332 1 12345566665 55 44441 3345788888
Q ss_pred CCCCcEEEEe-CCCCCCceEEEccCCCEEEEEecCCCEEEEEEcCCCCCcceeEeecCCCCCCceEECCCCCEEEEEecC
Q 018242 188 PATKQVTVLL-GNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGGFWVGIHSR 266 (359)
Q Consensus 188 ~~~~~~~~~~-~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lwv~~~~~ 266 (359)
+.++++.... .+......+.++.. + .+.+.+.+..|..||+.... .....+....+...++.+ .+++.++....
T Consensus 358 ~~~~~cl~sl~gH~~~V~sl~~~~~-~-~~~Sgs~D~~IkvWdl~~~~-~c~~tl~~h~~~v~~l~~--~~~~Lvs~~aD 432 (537)
T KOG0274|consen 358 PRTGKCLKSLSGHTGRVYSLIVDSE-N-RLLSGSLDTTIKVWDLRTKR-KCIHTLQGHTSLVSSLLL--RDNFLVSSSAD 432 (537)
T ss_pred hhhceeeeeecCCcceEEEEEecCc-c-eEEeeeeccceEeecCCchh-hhhhhhcCCccccccccc--ccceeEecccc
Confidence 8877665443 33334456655543 4 45556666889999986541 111111112222333333 34555555444
Q ss_pred CCccccccccCC-ccceeeecCCc
Q 018242 267 RKGISKLVLSFP-WIGNVLIKLPI 289 (359)
Q Consensus 267 ~~~~~~~~~~~~-~~g~~~~~~~~ 289 (359)
+. +..++ ..++.++.+..
T Consensus 433 ~~-----Ik~WD~~~~~~~~~~~~ 451 (537)
T KOG0274|consen 433 GT-----IKLWDAEEGECLRTLEG 451 (537)
T ss_pred cc-----EEEeecccCceeeeecc
Confidence 43 44443 35555555555
No 337
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=86.18 E-value=3.6 Score=23.71 Aligned_cols=29 Identities=31% Similarity=0.444 Sum_probs=25.1
Q ss_pred CCCCceEEEccCCCeeEEecCCCEEEEEE
Q 018242 33 AIGPESLAFDALGEGPYTGVSDGRIIKWH 61 (359)
Q Consensus 33 ~~~p~~i~~~~~G~~l~~~~~~~~i~~~d 61 (359)
.....+|++.|+++.+.++..++.|..||
T Consensus 11 ~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 11 SSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp SSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 45677999999999888899999999986
No 338
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=86.16 E-value=44 Score=34.43 Aligned_cols=25 Identities=12% Similarity=0.213 Sum_probs=21.1
Q ss_pred CCeEEEEeCCCcEEEEeCCCCeEEE
Q 018242 107 NGDLYIADAYFGLLKVGPEGGLATA 131 (359)
Q Consensus 107 ~g~l~v~~~~~~i~~~~~~~~~~~~ 131 (359)
++.||+++..+.|+.+|.++|+..-
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW 218 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKW 218 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEE
Confidence 7899999877789999999988643
No 339
>PF14517 Tachylectin: Tachylectin; PDB: 1TL2_A.
Probab=85.97 E-value=2.7 Score=35.94 Aligned_cols=131 Identities=17% Similarity=0.157 Sum_probs=58.5
Q ss_pred EEEeeCCCCCCceEEEccCCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccc-cccCCcceEEEEe
Q 018242 26 VQYQIEGAIGPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAK-EHICGRPLGLCFN 104 (359)
Q Consensus 26 ~~~~~~~~~~p~~i~~~~~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~p~gi~~~ 104 (359)
.+|..++-..=..|++++.|. ||+-..++.+++..+-+..-..+.. +.+ ..+ ...-+....+.++
T Consensus 73 ~~Ig~g~W~~F~~i~~d~~G~-LYaV~~~G~lyR~~~~~~~~~~W~~---------~~~----~~iG~~GW~~f~~vfa~ 138 (229)
T PF14517_consen 73 KQIGDGGWNSFKFIFFDPTGV-LYAVTPDGKLYRHPRPTNGSDNWIG---------GSG----KKIGGTGWNDFDAVFAG 138 (229)
T ss_dssp EEEE-S-GGG-SEEEE-TTS--EEEEETT-EEEEES---STT--HHH----------HS----EEEE-SSGGGEEEEEE-
T ss_pred cccccCcccceeEEEecCCcc-EEEeccccceeeccCCCccCcchhh---------ccc----eecccCCCccceEEEeC
Confidence 355555333334899999998 8877778899888764431111100 000 011 1111234567777
Q ss_pred cCCCeEEEEeCCCcEEEE-eCCCCeEEEEe--ecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCc
Q 018242 105 KTNGDLYIADAYFGLLKV-GPEGGLATAVA--TQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTG 181 (359)
Q Consensus 105 ~~~g~l~v~~~~~~i~~~-~~~~~~~~~~~--~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g 181 (359)
+ +|.||+.+..+.+++. .+.++.-+-+. .............|...++|. ||..++ .|
T Consensus 139 ~-~GvLY~i~~dg~~~~~~~p~~~~~~W~~~s~~v~~~gw~~~~~i~~~~~g~-L~~V~~------------------~G 198 (229)
T PF14517_consen 139 P-NGVLYAITPDGRLYRRYRPDGGSDRWLSGSGLVGGGGWDSFHFIFFSPDGN-LWAVKS------------------NG 198 (229)
T ss_dssp T-TS-EEEEETTE-EEEE---SSTT--HHHH-EEEESSSGGGEEEEEE-TTS--EEEE-E------------------TT
T ss_pred C-CccEEEEcCCCceEEeCCCCCCCCccccccceeccCCcccceEEeeCCCCc-EEEEec------------------CC
Confidence 7 8999988855446665 44433211000 000111223456788889999 888832 45
Q ss_pred eEEEEeCCC
Q 018242 182 RLMKYDPAT 190 (359)
Q Consensus 182 ~v~~~d~~~ 190 (359)
.||+..+.+
T Consensus 199 ~lyr~~~p~ 207 (229)
T PF14517_consen 199 KLYRGRPPQ 207 (229)
T ss_dssp EEEEES---
T ss_pred EEeccCCcc
Confidence 788776654
No 340
>PF14517 Tachylectin: Tachylectin; PDB: 1TL2_A.
Probab=85.90 E-value=8.9 Score=32.83 Aligned_cols=159 Identities=13% Similarity=0.066 Sum_probs=68.9
Q ss_pred CCCCceEEEccCCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCccccccccccc-CCcceEEEEecCCCeEE
Q 018242 33 AIGPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHI-CGRPLGLCFNKTNGDLY 111 (359)
Q Consensus 33 ~~~p~~i~~~~~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~p~gi~~~~~~g~l~ 111 (359)
.+.=..|+..|+|+ +|.-.. +.+++..+.+........ .++ .+-.. =+.-..|.+++ .|.||
T Consensus 33 w~~~~~i~~~P~g~-lY~I~~-~~lY~~~~~~~~~~~~~~------------~~~--~Ig~g~W~~F~~i~~d~-~G~LY 95 (229)
T PF14517_consen 33 WNNFRDIAAGPNGR-LYAIRN-DGLYRGSPSSSGGNTWDS------------GSK--QIGDGGWNSFKFIFFDP-TGVLY 95 (229)
T ss_dssp -TT-SEEEE-TTS--EEEEET-TEEEEES---STT--HHH------------H-E--EEE-S-GGG-SEEEE-T-TS-EE
T ss_pred ccccceEEEcCCce-EEEEEC-CceEEecCCccCcccccc------------cCc--ccccCcccceeEEEecC-CccEE
Confidence 34556788889998 555444 377777332110000000 000 11111 01234688888 99999
Q ss_pred EEeCCCcEEEEeCCCCeEEEE----eecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEE-
Q 018242 112 IADAYFGLLKVGPEGGLATAV----ATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKY- 186 (359)
Q Consensus 112 v~~~~~~i~~~~~~~~~~~~~----~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~- 186 (359)
..+....|+|....+...... ...+....-.....+.++++|- ||.-+.. +.+++.
T Consensus 96 aV~~~G~lyR~~~~~~~~~~W~~~~~~~iG~~GW~~f~~vfa~~~Gv-LY~i~~d------------------g~~~~~~ 156 (229)
T PF14517_consen 96 AVTPDGKLYRHPRPTNGSDNWIGGSGKKIGGTGWNDFDAVFAGPNGV-LYAITPD------------------GRLYRRY 156 (229)
T ss_dssp EEETT-EEEEES---STT--HHH-HSEEEE-SSGGGEEEEEE-TTS--EEEEETT------------------E-EEEE-
T ss_pred EeccccceeeccCCCccCcchhhccceecccCCCccceEEEeCCCcc-EEEEcCC------------------CceEEeC
Confidence 887665677775432211111 0111011223456788899998 8888532 346655
Q ss_pred eCCCCcEE------EEe-CCCCCCceEEEccCCCEEEEEecCCCEEEEEE
Q 018242 187 DPATKQVT------VLL-GNLSFPNGVALSEDGNYILLAETTSCRILRYW 229 (359)
Q Consensus 187 d~~~~~~~------~~~-~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~ 229 (359)
.|..+.-. .+. .....+.-|.+++++. ||.. ..++.|+++.
T Consensus 157 ~p~~~~~~W~~~s~~v~~~gw~~~~~i~~~~~g~-L~~V-~~~G~lyr~~ 204 (229)
T PF14517_consen 157 RPDGGSDRWLSGSGLVGGGGWDSFHFIFFSPDGN-LWAV-KSNGKLYRGR 204 (229)
T ss_dssp --SSTT--HHHH-EEEESSSGGGEEEEEE-TTS--EEEE--ETTEEEEES
T ss_pred CCCCCCCccccccceeccCCcccceEEeeCCCCc-EEEE-ecCCEEeccC
Confidence 33322111 111 2222345677888876 7777 4557888764
No 341
>PLN02153 epithiospecifier protein
Probab=85.82 E-value=28 Score=31.84 Aligned_cols=120 Identities=9% Similarity=0.099 Sum_probs=57.5
Q ss_pred CEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEEeCC------------CcEEEE
Q 018242 55 GRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIADAY------------FGLLKV 122 (359)
Q Consensus 55 ~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~~~~------------~~i~~~ 122 (359)
..+++||+.+++|+.+....+. ..+....-+.++.. +++|||.... +.+..|
T Consensus 101 ~~v~~yd~~t~~W~~~~~~~~~--------------~~p~~R~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~v~~y 164 (341)
T PLN02153 101 SDFYSYDTVKNEWTFLTKLDEE--------------GGPEARTFHSMASD--ENHVYVFGGVSKGGLMKTPERFRTIEAY 164 (341)
T ss_pred CcEEEEECCCCEEEEeccCCCC--------------CCCCCceeeEEEEE--CCEEEEECCccCCCccCCCcccceEEEE
Confidence 3688999999888865421100 00011111233333 6778875321 137789
Q ss_pred eCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCC-ccccccceeeeeecCCCceEEEEeCCCCcEEEEe
Q 018242 123 GPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSS-QFQRRNHISVILSGDKTGRLMKYDPATKQVTVLL 197 (359)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~-~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~ 197 (359)
|+++.+++.+...........-..++ .-+|+ +|+.-... ....... .......+++||+.+.+...+.
T Consensus 165 d~~~~~W~~l~~~~~~~~~r~~~~~~-~~~~~-iyv~GG~~~~~~~gG~-----~~~~~~~v~~yd~~~~~W~~~~ 233 (341)
T PLN02153 165 NIADGKWVQLPDPGENFEKRGGAGFA-VVQGK-IWVVYGFATSILPGGK-----SDYESNAVQFFDPASGKWTEVE 233 (341)
T ss_pred ECCCCeEeeCCCCCCCCCCCCcceEE-EECCe-EEEEeccccccccCCc-----cceecCceEEEEcCCCcEEecc
Confidence 99988887653211100111112223 24666 88751100 0000000 0001246899999887776554
No 342
>PLN02193 nitrile-specifier protein
Probab=85.49 E-value=36 Score=32.83 Aligned_cols=111 Identities=14% Similarity=0.096 Sum_probs=58.0
Q ss_pred CCeEEEEeCC------CcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCC
Q 018242 107 NGDLYIADAY------FGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKT 180 (359)
Q Consensus 107 ~g~l~v~~~~------~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~ 180 (359)
++.||+.... +.+++||+.+.+++.+...........-+.++. -+++ ||+.--... ....
T Consensus 228 ~~~lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~~~~-~~~~-iYv~GG~~~------------~~~~ 293 (470)
T PLN02193 228 GSTLYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVEEGPTPRSFHSMAA-DEEN-VYVFGGVSA------------TARL 293 (470)
T ss_pred CCEEEEECCCCCCCCCccEEEEECCCCEEEEcCcCCCCCCCccceEEEE-ECCE-EEEECCCCC------------CCCc
Confidence 6788886321 358999999998876543211111112223333 3455 888621100 0112
Q ss_pred ceEEEEeCCCCcEEEEeCC--CCCCc---eEEEccCCCEEEEEecC----CCEEEEEEcCCC
Q 018242 181 GRLMKYDPATKQVTVLLGN--LSFPN---GVALSEDGNYILLAETT----SCRILRYWLKTS 233 (359)
Q Consensus 181 g~v~~~d~~~~~~~~~~~~--~~~p~---gia~~~d~~~l~v~~~~----~~~i~~~~~~~~ 233 (359)
..+.+||+.+.+...+... ...+. .++. .+++ +|+..-. .+.+++||+..+
T Consensus 294 ~~~~~yd~~t~~W~~~~~~~~~~~~R~~~~~~~-~~gk-iyviGG~~g~~~~dv~~yD~~t~ 353 (470)
T PLN02193 294 KTLDSYNIVDKKWFHCSTPGDSFSIRGGAGLEV-VQGK-VWVVYGFNGCEVDDVHYYDPVQD 353 (470)
T ss_pred ceEEEEECCCCEEEeCCCCCCCCCCCCCcEEEE-ECCc-EEEEECCCCCccCceEEEECCCC
Confidence 3588899988776654321 11111 2222 3555 6665432 256899987654
No 343
>KOG1215 consensus Low-density lipoprotein receptors containing Ca2+-binding EGF-like domains [Signal transduction mechanisms]
Probab=85.49 E-value=47 Score=34.94 Aligned_cols=162 Identities=19% Similarity=0.207 Sum_probs=103.3
Q ss_pred EEeeCCCCCCceEEEccC-CCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEec
Q 018242 27 QYQIEGAIGPESLAFDAL-GEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNK 105 (359)
Q Consensus 27 ~~~~~~~~~p~~i~~~~~-G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~ 105 (359)
.+-..+...|++++.|-- +..+|++.....+...+.+... +... ..... ..|..+++++
T Consensus 473 ~~~~~g~~~~~~lavD~~~~~~y~tDe~~~~i~v~~~~g~~-~~vl------------------~~~~l-~~~r~~~v~p 532 (877)
T KOG1215|consen 473 ELCGDGLCIPEGLAVDWIGDNIYWTDEGNCLIEVADLDGSS-RKVL------------------VSKDL-DLPRSIAVDP 532 (877)
T ss_pred eEeccCccccCcEEEEeccCCceecccCCceeEEEEccCCc-eeEE------------------EecCC-CCccceeecc
Confidence 344556789999999964 4568888888888888866542 2221 11222 5678899999
Q ss_pred CCCeEEEEeCCC--cEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceE
Q 018242 106 TNGDLYIADAYF--GLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRL 183 (359)
Q Consensus 106 ~~g~l~v~~~~~--~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v 183 (359)
..+.++..++.. .|.|-..++.....+... ....|++++.|-..+++|..|.... -.+
T Consensus 533 ~~g~~~wtd~~~~~~i~ra~~dg~~~~~l~~~----~~~~p~glt~d~~~~~~yw~d~~~~----------------~~i 592 (877)
T KOG1215|consen 533 EKGLMFWTDWGQPPRIERASLDGSERAVLVTN----GILWPNGLTIDYETDRLYWADAKLD----------------YTI 592 (877)
T ss_pred ccCeeEEecCCCCchhhhhcCCCCCceEEEeC----CccCCCcceEEeecceeEEEcccCC----------------cce
Confidence 889999988753 366666665544443321 2468899999976666999865421 124
Q ss_pred EEEeCCCCcEE-EEeCCCCCCceEEEccCCCEEEEEecCCCEEEEEEc
Q 018242 184 MKYDPATKQVT-VLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWL 230 (359)
Q Consensus 184 ~~~d~~~~~~~-~~~~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~ 230 (359)
...+-++..-+ ........|.+++...+ .+||++.....+.+...
T Consensus 593 ~~~~~~g~~r~~~~~~~~~~p~~~~~~~~--~iyw~d~~~~~~~~~~~ 638 (877)
T KOG1215|consen 593 ESANMDGQNRRVVDSEDLPHPFGLSVFED--YIYWTDWSNRAISRAEK 638 (877)
T ss_pred eeeecCCCceEEeccccCCCceEEEEecc--eeEEeeccccceEeeec
Confidence 44444432222 22344567888887655 48999988776666554
No 344
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=85.39 E-value=35 Score=33.06 Aligned_cols=120 Identities=17% Similarity=0.113 Sum_probs=57.0
Q ss_pred EEEccCCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccC-CcceEEEEecCCCeEEEEeC--
Q 018242 39 LAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHIC-GRPLGLCFNKTNGDLYIADA-- 115 (359)
Q Consensus 39 i~~~~~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~p~gi~~~~~~g~l~v~~~-- 115 (359)
+...++|. +++... ..+..+|..+.....+.. .... ..-|.+...+ +|++++...
T Consensus 153 ~~~l~nG~-ll~~~~-~~~~e~D~~G~v~~~~~l-------------------~~~~~~~HHD~~~l~-nGn~L~l~~~~ 210 (477)
T PF05935_consen 153 FKQLPNGN-LLIGSG-NRLYEIDLLGKVIWEYDL-------------------PGGYYDFHHDIDELP-NGNLLILASET 210 (477)
T ss_dssp EEE-TTS--EEEEEB-TEEEEE-TT--EEEEEE---------------------TTEE-B-S-EEE-T-TS-EEEEEEET
T ss_pred eeEcCCCC-EEEecC-CceEEEcCCCCEEEeeec-------------------CCcccccccccEECC-CCCEEEEEeec
Confidence 66778888 444343 678888887653333321 1100 1124566677 666554322
Q ss_pred ------------CCcEEEEeCCCCeEEEEee---cC---CC-----------------ccccccceEEEeCCCCEEEEEe
Q 018242 116 ------------YFGLLKVGPEGGLATAVAT---QS---EG-----------------IPFRFCNSLDIDQSTGIIYFTD 160 (359)
Q Consensus 116 ------------~~~i~~~~~~~~~~~~~~~---~~---~~-----------------~~~~~~~~l~~d~~g~~l~v~d 160 (359)
.+.|+.+| .+|++..... .. .. ..-..+|++..++.+..|.++.
T Consensus 211 ~~~~~~~~~~~~~D~Ivevd-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~yd~~dd~iivSs 289 (477)
T PF05935_consen 211 KYVDEDKDVDTVEDVIVEVD-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSIDYDPSDDSIIVSS 289 (477)
T ss_dssp TEE-TS-EE---S-EEEEE--TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEEEEEETTTTEEEEEE
T ss_pred ccccCCCCccEecCEEEEEC-CCCCEEEEEehHHhCCcccccccccccccccccCCCCCCccccCccEEeCCCCeEEEEc
Confidence 23588899 6666543211 11 00 0113568899998434388873
Q ss_pred CCCccccccceeeeeecCCCceEEEEeCCCCcEEEEeC
Q 018242 161 SSSQFQRRNHISVILSGDKTGRLMKYDPATKQVTVLLG 198 (359)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~ 198 (359)
.. ...|+++|..++++..+..
T Consensus 290 R~-----------------~s~V~~Id~~t~~i~Wilg 310 (477)
T PF05935_consen 290 RH-----------------QSAVIKIDYRTGKIKWILG 310 (477)
T ss_dssp TT-----------------T-EEEEEE-TTS-EEEEES
T ss_pred Cc-----------------ceEEEEEECCCCcEEEEeC
Confidence 32 3479999988888887754
No 345
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=84.93 E-value=30 Score=31.37 Aligned_cols=74 Identities=16% Similarity=0.152 Sum_probs=41.8
Q ss_pred CCeEEEEeCC------CcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCC
Q 018242 107 NGDLYIADAY------FGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKT 180 (359)
Q Consensus 107 ~g~l~v~~~~------~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~ 180 (359)
+++||+.... +.+.+||+++.+++.+.. .+..+ .....++.-+++ ||+---.. ....
T Consensus 123 ~~~iYv~GG~~~~~~~~~v~~yd~~~~~W~~~~~-~p~~~--r~~~~~~~~~~~-iYv~GG~~-------------~~~~ 185 (323)
T TIGR03548 123 DGTLYVGGGNRNGKPSNKSYLFNLETQEWFELPD-FPGEP--RVQPVCVKLQNE-LYVFGGGS-------------NIAY 185 (323)
T ss_pred CCEEEEEeCcCCCccCceEEEEcCCCCCeeECCC-CCCCC--CCcceEEEECCE-EEEEcCCC-------------Cccc
Confidence 6788886321 248899999988876532 11111 112233344666 99872110 0001
Q ss_pred ceEEEEeCCCCcEEEEe
Q 018242 181 GRLMKYDPATKQVTVLL 197 (359)
Q Consensus 181 g~v~~~d~~~~~~~~~~ 197 (359)
..+++||+++++.+.+.
T Consensus 186 ~~~~~yd~~~~~W~~~~ 202 (323)
T TIGR03548 186 TDGYKYSPKKNQWQKVA 202 (323)
T ss_pred cceEEEecCCCeeEECC
Confidence 24678999887766543
No 346
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=84.83 E-value=3.2 Score=38.79 Aligned_cols=120 Identities=11% Similarity=0.044 Sum_probs=64.7
Q ss_pred cccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCCcEEEEeCCCCCCceEEEccCCCEEEEEecC
Q 018242 142 RFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQVTVLLGNLSFPNGVALSEDGNYILLAETT 221 (359)
Q Consensus 142 ~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~p~gia~~~d~~~l~v~~~~ 221 (359)
..|..+....+|+++.++ +..|.|..+|-.++.+..-..-......+.|-...+ |++-..
T Consensus 130 FGPY~~~ytrnGrhlllg------------------GrKGHlAa~Dw~t~~L~~Ei~v~Etv~Dv~~LHneq--~~AVAQ 189 (545)
T KOG1272|consen 130 FGPYHLDYTRNGRHLLLG------------------GRKGHLAAFDWVTKKLHFEINVMETVRDVTFLHNEQ--FFAVAQ 189 (545)
T ss_pred cCCeeeeecCCccEEEec------------------CCccceeeeecccceeeeeeehhhhhhhhhhhcchH--HHHhhh
Confidence 467888899999988777 456788888877766543223333445555554443 233334
Q ss_pred CCEEEEEEcCCCCCcceeEeecCCCCCCceEECCCCCEEEEEecCCCccccccccCCccceeeecCCc
Q 018242 222 SCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGGFWVGIHSRRKGISKLVLSFPWIGNVLIKLPI 289 (359)
Q Consensus 222 ~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 289 (359)
...+++||-.+..+...+ .. .....+.+=|...|.++....+.. -+.+-..|++...+-+
T Consensus 190 K~y~yvYD~~GtElHClk---~~-~~v~rLeFLPyHfLL~~~~~~G~L----~Y~DVS~GklVa~~~t 249 (545)
T KOG1272|consen 190 KKYVYVYDNNGTELHCLK---RH-IRVARLEFLPYHFLLVAASEAGFL----KYQDVSTGKLVASIRT 249 (545)
T ss_pred hceEEEecCCCcEEeehh---hc-CchhhhcccchhheeeecccCCce----EEEeechhhhhHHHHc
Confidence 566777764433222211 11 012234444555566666555531 1222346666665543
No 347
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=84.82 E-value=46 Score=33.58 Aligned_cols=178 Identities=10% Similarity=0.068 Sum_probs=93.5
Q ss_pred CCceEEEccC-CCeeEEecCCCEEEEEEcCCcc-eEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEE
Q 018242 35 GPESLAFDAL-GEGPYTGVSDGRIIKWHQDQRR-WLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYI 112 (359)
Q Consensus 35 ~p~~i~~~~~-G~~l~~~~~~~~i~~~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v 112 (359)
..+.+.|.+. -.++..+..+|.|-.||..... ..++ .......+.+.|+|..++.|+
T Consensus 135 s~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~---------------------~~nSESiRDV~fsp~~~~~F~ 193 (839)
T KOG0269|consen 135 SANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTF---------------------RSNSESIRDVKFSPGYGNKFA 193 (839)
T ss_pred ceeeeeeccCCccEEEecCCCceEEEEeeecccccccc---------------------cccchhhhceeeccCCCceEE
Confidence 5667888875 4557778888999999986542 1111 112233567888887888898
Q ss_pred EeCCCc-EEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCC
Q 018242 113 ADAYFG-LLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATK 191 (359)
Q Consensus 113 ~~~~~~-i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~ 191 (359)
+...+| +.++|+..-.. .... ... ....+.-+-++|++ -|++.-+ ++..|-.||-.+.
T Consensus 194 s~~dsG~lqlWDlRqp~r-~~~k-~~A-H~GpV~c~nwhPnr--~~lATGG----------------RDK~vkiWd~t~~ 252 (839)
T KOG0269|consen 194 SIHDSGYLQLWDLRQPDR-CEKK-LTA-HNGPVLCLNWHPNR--EWLATGG----------------RDKMVKIWDMTDS 252 (839)
T ss_pred EecCCceEEEeeccCchh-HHHH-hhc-ccCceEEEeecCCC--ceeeecC----------------CCccEEEEeccCC
Confidence 876666 66788753210 0000 000 11123346678954 5888433 3444545554433
Q ss_pred cEEE--EeCCCCCCceEEEccCCCEEEEEe--cCCCEEEEEEcCCCCCcceeEeecCCCCCCceEECC
Q 018242 192 QVTV--LLGNLSFPNGVALSEDGNYILLAE--TTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSP 255 (359)
Q Consensus 192 ~~~~--~~~~~~~p~gia~~~d~~~l~v~~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~ 255 (359)
+... .........-+.+=|+..+.+.+. ..+..|.+||+..+... ...+..-.....+|+++.
T Consensus 253 ~~~~~~tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP-~~t~~eH~~~vt~i~W~~ 319 (839)
T KOG0269|consen 253 RAKPKHTINTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIP-YATFLEHTDSVTGIAWDS 319 (839)
T ss_pred CccceeEEeecceeeeeeeccCccchhhhhhccccceEEEEeecccccc-ceeeeccCccccceeccC
Confidence 2221 112222234455656554333222 22457999998765432 222322222344566654
No 348
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=84.51 E-value=5.4 Score=22.88 Aligned_cols=32 Identities=31% Similarity=0.316 Sum_probs=23.7
Q ss_pred eCCCCCCceEEEccCCCEEEEEecCCCEEEEEE
Q 018242 197 LGNLSFPNGVALSEDGNYILLAETTSCRILRYW 229 (359)
Q Consensus 197 ~~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~ 229 (359)
.......+.++++|+++ .+++...++.|..||
T Consensus 8 ~~h~~~i~~i~~~~~~~-~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 8 RGHSSSINSIAWSPDGN-FLASGSSDGTIRVWD 39 (39)
T ss_dssp ESSSSSEEEEEEETTSS-EEEEEETTSEEEEEE
T ss_pred cCCCCcEEEEEEecccc-cceeeCCCCEEEEEC
Confidence 34445678999999987 566666778998885
No 349
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.31 E-value=45 Score=32.88 Aligned_cols=148 Identities=13% Similarity=0.038 Sum_probs=84.1
Q ss_pred cCCCeeEEecCCCEEEEEEcCCcc-eEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEEeCCC-cEE
Q 018242 43 ALGEGPYTGVSDGRIIKWHQDQRR-WLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIADAYF-GLL 120 (359)
Q Consensus 43 ~~G~~l~~~~~~~~i~~~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~~~~~-~i~ 120 (359)
+.-+-+.++..+..|..+|.++.+ ++.| .......+.|++.| ..-.+++...+ -|-
T Consensus 65 aRknWiv~GsDD~~IrVfnynt~ekV~~F---------------------eAH~DyIR~iavHP-t~P~vLtsSDDm~iK 122 (794)
T KOG0276|consen 65 ARKNWIVTGSDDMQIRVFNYNTGEKVKTF---------------------EAHSDYIRSIAVHP-TLPYVLTSSDDMTIK 122 (794)
T ss_pred eccceEEEecCCceEEEEecccceeeEEe---------------------eccccceeeeeecC-CCCeEEecCCccEEE
Confidence 334425567888999999998863 4444 23333456788888 44444443333 355
Q ss_pred EEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCCc-EEEEeCC
Q 018242 121 KVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQ-VTVLLGN 199 (359)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~-~~~~~~~ 199 (359)
.++.+.. +.. ...+.+ ....+..+++.|+...-|++-+ .+.+|-+|...... ..++..+
T Consensus 123 lW~we~~-wa~-~qtfeG-H~HyVMqv~fnPkD~ntFaS~s-----------------LDrTVKVWslgs~~~nfTl~gH 182 (794)
T KOG0276|consen 123 LWDWENE-WAC-EQTFEG-HEHYVMQVAFNPKDPNTFASAS-----------------LDRTVKVWSLGSPHPNFTLEGH 182 (794)
T ss_pred EeeccCc-eee-eeEEcC-cceEEEEEEecCCCccceeeee-----------------ccccEEEEEcCCCCCceeeecc
Confidence 5666643 221 111222 2247788999988664565522 23334444433211 1233455
Q ss_pred CCCCceEEEccCCC-EEEEEecCCCEEEEEEcCC
Q 018242 200 LSFPNGVALSEDGN-YILLAETTSCRILRYWLKT 232 (359)
Q Consensus 200 ~~~p~gia~~~d~~-~l~v~~~~~~~i~~~~~~~ 232 (359)
..+.|-+.+.+.|. =.+++..++..+.+||.+.
T Consensus 183 ekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQt 216 (794)
T KOG0276|consen 183 EKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQT 216 (794)
T ss_pred ccCcceEEeccCCCcceEEecCCCceEEEeecch
Confidence 56778888876443 3567788889999999653
No 350
>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)
Probab=84.03 E-value=32 Score=30.99 Aligned_cols=39 Identities=13% Similarity=0.026 Sum_probs=28.3
Q ss_pred CCCCceEEEccCCCeeEEecCCCEEEEEEcCCcceEEEe
Q 018242 33 AIGPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFA 71 (359)
Q Consensus 33 ~~~p~~i~~~~~G~~l~~~~~~~~i~~~d~~~~~~~~~~ 71 (359)
.....+|..+++|.+|+.+-....|+++++.++++....
T Consensus 143 ~~HiNsV~~~~~G~yLiS~R~~~~i~~I~~~tG~I~W~l 181 (299)
T PF14269_consen 143 YFHINSVDKDDDGDYLISSRNTSTIYKIDPSTGKIIWRL 181 (299)
T ss_pred ccEeeeeeecCCccEEEEecccCEEEEEECCCCcEEEEe
Confidence 345558888999995555555589999999988766543
No 351
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=83.94 E-value=11 Score=37.54 Aligned_cols=175 Identities=13% Similarity=0.160 Sum_probs=88.5
Q ss_pred CceEEEccCCCeeEEecCCCEEEEEEcCCcc-eEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEEe
Q 018242 36 PESLAFDALGEGPYTGVSDGRIIKWHQDQRR-WLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIAD 114 (359)
Q Consensus 36 p~~i~~~~~G~~l~~~~~~~~i~~~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~~ 114 (359)
-+++.++.+..++-.+...|.|-.||+.... +++ +....-.+..+.|.| =+..+.+-
T Consensus 73 IeSl~f~~~E~LlaagsasgtiK~wDleeAk~vrt---------------------Ltgh~~~~~sv~f~P-~~~~~a~g 130 (825)
T KOG0267|consen 73 IESLTFDTSERLLAAGSASGTIKVWDLEEAKIVRT---------------------LTGHLLNITSVDFHP-YGEFFASG 130 (825)
T ss_pred ceeeecCcchhhhcccccCCceeeeehhhhhhhhh---------------------hhccccCcceeeecc-ceEEeccc
Confidence 4577788887767788888999999998652 111 111111233455666 44443221
Q ss_pred CC-CcEEEEeCC-CCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCCc
Q 018242 115 AY-FGLLKVGPE-GGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQ 192 (359)
Q Consensus 115 ~~-~~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~ 192 (359)
.. ..+..+|.+ .|-...+ . + ....++-+.+.|+|+ |+.+.+. ...+-.+|...|+
T Consensus 131 Stdtd~~iwD~Rk~Gc~~~~-~---s-~~~vv~~l~lsP~Gr--~v~~g~e----------------d~tvki~d~~agk 187 (825)
T KOG0267|consen 131 STDTDLKIWDIRKKGCSHTY-K---S-HTRVVDVLRLSPDGR--WVASGGE----------------DNTVKIWDLTAGK 187 (825)
T ss_pred cccccceehhhhccCceeee-c---C-CcceeEEEeecCCCc--eeeccCC----------------cceeeeecccccc
Confidence 11 124445543 2222221 1 1 122455678899998 7775432 2345566665454
Q ss_pred EEE-EeCCCCCCceEEEccCCCEEEEEecCCCEEEEEEcCCCCCcceeEeecC---CCCCCceEECCCCCEEE
Q 018242 193 VTV-LLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQL---PGFPDNIKRSPRGGFWV 261 (359)
Q Consensus 193 ~~~-~~~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~---~~~p~~i~~d~~G~lwv 261 (359)
+.. +...-.....+.++|. +.|.-....+..+..|++. +++.+... ...+.+..++++|....
T Consensus 188 ~~~ef~~~e~~v~sle~hp~-e~Lla~Gs~d~tv~f~dle-----tfe~I~s~~~~~~~v~~~~fn~~~~~~~ 254 (825)
T KOG0267|consen 188 LSKEFKSHEGKVQSLEFHPL-EVLLAPGSSDRTVRFWDLE-----TFEVISSGKPETDGVRSLAFNPDGKIVL 254 (825)
T ss_pred cccccccccccccccccCch-hhhhccCCCCceeeeeccc-----eeEEeeccCCccCCceeeeecCCceeee
Confidence 432 1111111223334443 2355555566667667643 13333221 12355677888886554
No 352
>PF06739 SBBP: Beta-propeller repeat; InterPro: IPR010620 This family is related to IPR001680 from INTERPRO and is likely to also form a beta-propeller. SBBP stands for Seven Bladed Beta Propeller.
Probab=83.40 E-value=1.2 Score=26.21 Aligned_cols=20 Identities=15% Similarity=0.308 Sum_probs=16.6
Q ss_pred CCCceEECCCCCEEEEEecC
Q 018242 247 FPDNIKRSPRGGFWVGIHSR 266 (359)
Q Consensus 247 ~p~~i~~d~~G~lwv~~~~~ 266 (359)
.+.+|++|++|++|++....
T Consensus 14 ~~~~IavD~~GNiYv~G~T~ 33 (38)
T PF06739_consen 14 YGNGIAVDSNGNIYVTGYTN 33 (38)
T ss_pred eEEEEEECCCCCEEEEEeec
Confidence 37789999999999977654
No 353
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=82.50 E-value=8.5 Score=35.43 Aligned_cols=114 Identities=14% Similarity=0.140 Sum_probs=63.1
Q ss_pred CceEEEccCCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccc--cccccCCcceEEEEecCCCeEEE-
Q 018242 36 PESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHA--AKEHICGRPLGLCFNKTNGDLYI- 112 (359)
Q Consensus 36 p~~i~~~~~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~p~gi~~~~~~g~l~v- 112 (359)
-.++.++++|.++-.+..++.++.|.+...... .. ..+.-.++ +.-.. ........+.-++..+ +++..+
T Consensus 68 VN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~-~~----d~e~~~~k-e~w~v~k~lr~h~~diydL~Ws~-d~~~l~s 140 (434)
T KOG1009|consen 68 VNVVRFSPDGELLASGGDGGEVFLWKQGDVRIF-DA----DTEADLNK-EKWVVKKVLRGHRDDIYDLAWSP-DSNFLVS 140 (434)
T ss_pred eEEEEEcCCcCeeeecCCCceEEEEEecCcCCc-cc----cchhhhCc-cceEEEEEecccccchhhhhccC-CCceeee
Confidence 347889999997777777788999977631100 00 00000000 00000 0111123456677777 444444
Q ss_pred EeCCCcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCC
Q 018242 113 ADAYFGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSS 162 (359)
Q Consensus 113 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~ 162 (359)
+...+.++.+|...|++..... .....++++++||-++ ||...+
T Consensus 141 ~s~dns~~l~Dv~~G~l~~~~~----dh~~yvqgvawDpl~q--yv~s~s 184 (434)
T KOG1009|consen 141 GSVDNSVRLWDVHAGQLLAILD----DHEHYVQGVAWDPLNQ--YVASKS 184 (434)
T ss_pred eeccceEEEEEeccceeEeecc----ccccccceeecchhhh--hhhhhc
Confidence 4445568888988887654322 1235788999999887 565444
No 354
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=82.28 E-value=44 Score=31.29 Aligned_cols=134 Identities=11% Similarity=0.096 Sum_probs=69.0
Q ss_pred CEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEEeC------------CCcEEEE
Q 018242 55 GRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIADA------------YFGLLKV 122 (359)
Q Consensus 55 ~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~~~------------~~~i~~~ 122 (359)
+-+|.||.++.+|+.+..+. .+.....+.++..+ .+.||+-.. +..+..+
T Consensus 98 ndLy~Yn~k~~eWkk~~spn-----------------~P~pRsshq~va~~-s~~l~~fGGEfaSPnq~qF~HYkD~W~f 159 (521)
T KOG1230|consen 98 NDLYSYNTKKNEWKKVVSPN-----------------APPPRSSHQAVAVP-SNILWLFGGEFASPNQEQFHHYKDLWLF 159 (521)
T ss_pred eeeeEEeccccceeEeccCC-----------------CcCCCccceeEEec-cCeEEEeccccCCcchhhhhhhhheeee
Confidence 67889999999998875321 01112234556666 568887431 2248888
Q ss_pred eCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCCcEEEEeCCCCC
Q 018242 123 GPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQVTVLLGNLSF 202 (359)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~ 202 (359)
+..+++++.+...... ....-+.|++-..-- |.++-.... .+.+. ...-||.||.++-+...+......
T Consensus 160 d~~trkweql~~~g~P-S~RSGHRMvawK~~l-ilFGGFhd~--nr~y~-------YyNDvy~FdLdtykW~Klepsga~ 228 (521)
T KOG1230|consen 160 DLKTRKWEQLEFGGGP-SPRSGHRMVAWKRQL-ILFGGFHDS--NRDYI-------YYNDVYAFDLDTYKWSKLEPSGAG 228 (521)
T ss_pred eeccchheeeccCCCC-CCCccceeEEeeeeE-EEEcceecC--CCceE-------EeeeeEEEeccceeeeeccCCCCC
Confidence 9999998877542211 112234454443322 333311000 00111 123588999886544444333323
Q ss_pred C---ceEEE--ccCCCEEEE
Q 018242 203 P---NGVAL--SEDGNYILL 217 (359)
Q Consensus 203 p---~gia~--~~d~~~l~v 217 (359)
| .|.+| +|++..+++
T Consensus 229 PtpRSGcq~~vtpqg~i~vy 248 (521)
T KOG1230|consen 229 PTPRSGCQFSVTPQGGIVVY 248 (521)
T ss_pred CCCCCcceEEecCCCcEEEE
Confidence 3 35544 567774333
No 355
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=81.91 E-value=1.1 Score=32.53 Aligned_cols=21 Identities=24% Similarity=0.233 Sum_probs=13.8
Q ss_pred CCCchhHHHHHHHHHHHhhhc
Q 018242 1 MNSSLSFIAKSIVIFLFINSS 21 (359)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~ 21 (359)
|.+|.+++|+++++++++.|+
T Consensus 1 MaSK~~llL~l~LA~lLlisS 21 (95)
T PF07172_consen 1 MASKAFLLLGLLLAALLLISS 21 (95)
T ss_pred CchhHHHHHHHHHHHHHHHHh
Confidence 787777777666666555544
No 356
>PLN02193 nitrile-specifier protein
Probab=80.80 E-value=56 Score=31.54 Aligned_cols=110 Identities=10% Similarity=0.120 Sum_probs=58.8
Q ss_pred CEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEEeCC------CcEEEEeCCCCe
Q 018242 55 GRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIADAY------FGLLKVGPEGGL 128 (359)
Q Consensus 55 ~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~~~~------~~i~~~~~~~~~ 128 (359)
..+++||+.+++|+.+..... .+.....+.++.. +++||+.... ..+..||+.+.+
T Consensus 244 ndv~~yD~~t~~W~~l~~~~~----------------~P~~R~~h~~~~~--~~~iYv~GG~~~~~~~~~~~~yd~~t~~ 305 (470)
T PLN02193 244 NGFYSFDTTTNEWKLLTPVEE----------------GPTPRSFHSMAAD--EENVYVFGGVSATARLKTLDSYNIVDKK 305 (470)
T ss_pred ccEEEEECCCCEEEEcCcCCC----------------CCCCccceEEEEE--CCEEEEECCCCCCCCcceEEEEECCCCE
Confidence 468999999988887541100 0011112333333 6788886422 237889999888
Q ss_pred EEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCCcEEEEe
Q 018242 129 ATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQVTVLL 197 (359)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~ 197 (359)
++.+...........-..+++ -+++ +|+.--.. +.....+++||+++.+...+.
T Consensus 306 W~~~~~~~~~~~~R~~~~~~~-~~gk-iyviGG~~-------------g~~~~dv~~yD~~t~~W~~~~ 359 (470)
T PLN02193 306 WFHCSTPGDSFSIRGGAGLEV-VQGK-VWVVYGFN-------------GCEVDDVHYYDPVQDKWTQVE 359 (470)
T ss_pred EEeCCCCCCCCCCCCCcEEEE-ECCc-EEEEECCC-------------CCccCceEEEECCCCEEEEec
Confidence 876532111101111122332 3567 88762110 011246999999988776654
No 357
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=79.92 E-value=52 Score=30.63 Aligned_cols=27 Identities=19% Similarity=0.309 Sum_probs=19.1
Q ss_pred CCeEEEEeCC------------CcEEEEeCCCCeEEEEe
Q 018242 107 NGDLYIADAY------------FGLLKVGPEGGLATAVA 133 (359)
Q Consensus 107 ~g~l~v~~~~------------~~i~~~~~~~~~~~~~~ 133 (359)
++.||+.... +.+++||+.+++++.+.
T Consensus 84 ~~~IYV~GG~~~~~~~~~~~~~~~v~~YD~~~n~W~~~~ 122 (376)
T PRK14131 84 DGKLYVFGGIGKTNSEGSPQVFDDVYKYDPKTNSWQKLD 122 (376)
T ss_pred CCEEEEEcCCCCCCCCCceeEcccEEEEeCCCCEEEeCC
Confidence 6788886321 24888999988887654
No 358
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=79.90 E-value=61 Score=31.39 Aligned_cols=118 Identities=14% Similarity=0.133 Sum_probs=66.5
Q ss_pred eEEEEeCCCCcEEEEeCCCCC-CceEEEccCCC-EEEEEecCCCEEEEEEcCCCCCcceeEeecCCCCCCc-eEECCCCC
Q 018242 182 RLMKYDPATKQVTVLLGNLSF-PNGVALSEDGN-YILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDN-IKRSPRGG 258 (359)
Q Consensus 182 ~v~~~d~~~~~~~~~~~~~~~-p~gia~~~d~~-~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~-i~~d~~G~ 258 (359)
.++.++.++... .+.-...+ ...+.++++++ .-.+-+-.-..+..|+++.+ .+.+.+..|+| +.+.+.|+
T Consensus 252 ~Lyll~t~g~s~-~V~L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~------~v~df~egpRN~~~fnp~g~ 324 (566)
T KOG2315|consen 252 TLYLLATQGESV-SVPLLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGK------PVFDFPEGPRNTAFFNPHGN 324 (566)
T ss_pred eEEEEEecCceE-EEecCCCCCceEEEECCCCCEEEEEEecccceEEEEcCCCC------EeEeCCCCCccceEECCCCC
Confidence 577777763333 33222233 36788888875 34555555567888886543 22334444765 78899998
Q ss_pred EEE-EEecCCCccccccccCC-ccceeeecCCccceeeeeecccccCcceEEEEECCCCCEEEEEEc
Q 018242 259 FWV-GIHSRRKGISKLVLSFP-WIGNVLIKLPIDIVKIHSSLVKLSGNGGMAMRISEQGNVLEILEE 323 (359)
Q Consensus 259 lwv-~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 323 (359)
+.+ |.+++-.. + +-+++ ++.+.+.++... . ..++...|+|..+.+-+.
T Consensus 325 ii~lAGFGNL~G--~-mEvwDv~n~K~i~~~~a~-------------~-tt~~eW~PdGe~flTATT 374 (566)
T KOG2315|consen 325 IILLAGFGNLPG--D-MEVWDVPNRKLIAKFKAA-------------N-TTVFEWSPDGEYFLTATT 374 (566)
T ss_pred EEEEeecCCCCC--c-eEEEeccchhhccccccC-------------C-ceEEEEcCCCcEEEEEec
Confidence 555 66664221 1 23333 345555544321 1 456667788887766543
No 359
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=79.77 E-value=51 Score=31.90 Aligned_cols=100 Identities=16% Similarity=0.149 Sum_probs=57.5
Q ss_pred EEEEeCCCcEEEEeCCCCeEEEEe--ecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEe
Q 018242 110 LYIADAYFGLLKVGPEGGLATAVA--TQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYD 187 (359)
Q Consensus 110 l~v~~~~~~i~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d 187 (359)
-+++-..++|+|+|+.-.-...+. ....-......+.++...+|. |.|+ +..|.|-.||
T Consensus 397 TlvGLs~n~vfriDpRv~~~~kl~~~q~kqy~~k~nFsc~aTT~sG~-Ivvg------------------S~~GdIRLYd 457 (644)
T KOG2395|consen 397 TLVGLSDNSVFRIDPRVQGKNKLAVVQSKQYSTKNNFSCFATTESGY-IVVG------------------SLKGDIRLYD 457 (644)
T ss_pred cEEeecCCceEEecccccCcceeeeeeccccccccccceeeecCCce-EEEe------------------ecCCcEEeeh
Confidence 345656778999998622110111 100111223455667777886 7776 4456788888
Q ss_pred CCCCcEEEEeCCCC-CCceEEEccCCCEEEEEecCCCEEEEEEc
Q 018242 188 PATKQVTVLLGNLS-FPNGVALSEDGNYILLAETTSCRILRYWL 230 (359)
Q Consensus 188 ~~~~~~~~~~~~~~-~p~gia~~~d~~~l~v~~~~~~~i~~~~~ 230 (359)
.-..+.++..+++- ...++..+.||++++. +....|..++.
T Consensus 458 ri~~~AKTAlPgLG~~I~hVdvtadGKwil~--Tc~tyLlLi~t 499 (644)
T KOG2395|consen 458 RIGRRAKTALPGLGDAIKHVDVTADGKWILA--TCKTYLLLIDT 499 (644)
T ss_pred hhhhhhhhcccccCCceeeEEeeccCcEEEE--ecccEEEEEEE
Confidence 75444444444443 3457778889986444 45567777765
No 360
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=79.09 E-value=32 Score=31.72 Aligned_cols=69 Identities=19% Similarity=0.294 Sum_probs=42.4
Q ss_pred ccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeC---CCCcEEEEeCCCCCCceEEEccCCCEEEEEe
Q 018242 143 FCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDP---ATKQVTVLLGNLSFPNGVALSEDGNYILLAE 219 (359)
Q Consensus 143 ~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~---~~~~~~~~~~~~~~p~gia~~~d~~~l~v~~ 219 (359)
.++.+.+..+...+-++|.. |.++.++. ..+..+....+..-...++++||+++++.++
T Consensus 109 ~~~ai~~~~~~~sv~v~dka------------------gD~~~~di~s~~~~~~~~~lGhvSml~dVavS~D~~~IitaD 170 (390)
T KOG3914|consen 109 RPTAISFIREDTSVLVADKA------------------GDVYSFDILSADSGRCEPILGHVSMLLDVAVSPDDQFIITAD 170 (390)
T ss_pred CcceeeeeeccceEEEEeec------------------CCceeeeeecccccCcchhhhhhhhhheeeecCCCCEEEEec
Confidence 45667666665556666432 33444432 2245555556666667899999999777776
Q ss_pred cCCCEEEEEEc
Q 018242 220 TTSCRILRYWL 230 (359)
Q Consensus 220 ~~~~~i~~~~~ 230 (359)
.+ ..|++...
T Consensus 171 RD-EkIRvs~y 180 (390)
T KOG3914|consen 171 RD-EKIRVSRY 180 (390)
T ss_pred CC-ceEEEEec
Confidence 54 56666554
No 361
>PF14339 DUF4394: Domain of unknown function (DUF4394)
Probab=78.88 E-value=42 Score=28.95 Aligned_cols=79 Identities=19% Similarity=0.265 Sum_probs=53.7
Q ss_pred CceEEEccC-CCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEEe
Q 018242 36 PESLAFDAL-GEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIAD 114 (359)
Q Consensus 36 p~~i~~~~~-G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~~ 114 (359)
-.+|.+-|. |+ ||.-...++||.+|+.++..+.+.... ......+.+.++.|.|.-++|-+..
T Consensus 29 l~GID~Rpa~G~-LYgl~~~g~lYtIn~~tG~aT~vg~s~---------------~~~al~g~~~gvDFNP~aDRlRvvs 92 (236)
T PF14339_consen 29 LVGIDFRPANGQ-LYGLGSTGRLYTINPATGAATPVGASP---------------LTVALSGTAFGVDFNPAADRLRVVS 92 (236)
T ss_pred EEEEEeecCCCC-EEEEeCCCcEEEEECCCCeEEEeeccc---------------ccccccCceEEEecCcccCcEEEEc
Confidence 346777764 66 776667789999999998665542110 0112224467888888778888876
Q ss_pred CCCcEEEEeCCCCeEE
Q 018242 115 AYFGLLKVGPEGGLAT 130 (359)
Q Consensus 115 ~~~~i~~~~~~~~~~~ 130 (359)
..+.=+|++++++.+.
T Consensus 93 ~~GqNlR~npdtGav~ 108 (236)
T PF14339_consen 93 NTGQNLRLNPDTGAVT 108 (236)
T ss_pred cCCcEEEECCCCCCce
Confidence 5556789999988754
No 362
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=78.58 E-value=27 Score=32.22 Aligned_cols=72 Identities=18% Similarity=0.166 Sum_probs=47.4
Q ss_pred eEEEccCCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEEeCCC
Q 018242 38 SLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIADAYF 117 (359)
Q Consensus 38 ~i~~~~~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~~~~~ 117 (359)
+++|+..++.+|.+...+.+.+-|..+.+-..... -....+..+++..+|.++.+.+.+..+
T Consensus 110 ~L~F~~~N~~~~SG~~~~~VI~HDiEt~qsi~V~~------------------~~~~~~~VY~m~~~P~DN~~~~~t~~~ 171 (609)
T KOG4227|consen 110 SLEFDLENRFLYSGERWGTVIKHDIETKQSIYVAN------------------ENNNRGDVYHMDQHPTDNTLIVVTRAK 171 (609)
T ss_pred EEEEccCCeeEecCCCcceeEeeecccceeeeeec------------------ccCcccceeecccCCCCceEEEEecCc
Confidence 89999988889999999999998888764322211 112224577888888655554444444
Q ss_pred cEEEEeCCCC
Q 018242 118 GLLKVGPEGG 127 (359)
Q Consensus 118 ~i~~~~~~~~ 127 (359)
.+..+|....
T Consensus 172 ~V~~~D~Rd~ 181 (609)
T KOG4227|consen 172 LVSFIDNRDR 181 (609)
T ss_pred eEEEEeccCC
Confidence 5667776543
No 363
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=78.45 E-value=49 Score=29.56 Aligned_cols=141 Identities=18% Similarity=0.135 Sum_probs=73.6
Q ss_pred ceEEEEecCCCeEEEEeCCCcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeec
Q 018242 98 PLGLCFNKTNGDLYIADAYFGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSG 177 (359)
Q Consensus 98 p~gi~~~~~~g~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~ 177 (359)
-.|+.++ ++..||++...++..+|..+-...+++.+... +....++++++ |++.|++..
T Consensus 131 aygv~vs--Gn~aYVadlddgfLivdvsdpssP~lagrya~-~~~d~~~v~IS--Gn~AYvA~~---------------- 189 (370)
T COG5276 131 AYGVYVS--GNYAYVADLDDGFLIVDVSDPSSPQLAGRYAL-PGGDTHDVAIS--GNYAYVAWR---------------- 189 (370)
T ss_pred EEEEEec--CCEEEEeeccCcEEEEECCCCCCceeeeeecc-CCCCceeEEEe--cCeEEEEEe----------------
Confidence 3455554 78899999888988888765544344433221 11223567775 455888843
Q ss_pred CCCceEEEEeCCCCcEEEEeCC-CC--CCceEEEccCCCEEEEEecCCCEEEEEEcCCCCCcceeEeec-CCCCCCce--
Q 018242 178 DKTGRLMKYDPATKQVTVLLGN-LS--FPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQ-LPGFPDNI-- 251 (359)
Q Consensus 178 ~~~g~v~~~d~~~~~~~~~~~~-~~--~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~p~~i-- 251 (359)
.+++..+|........+... .. ...+...+ +++.|++.-. .++...|.++++. ...+.. -+.-|.++
T Consensus 190 --d~GL~ivDVSnp~sPvli~~~n~g~g~~sv~vs--dnr~y~vvy~-egvlivd~s~~ss--p~~~gsyet~~p~~~s~ 262 (370)
T COG5276 190 --DGGLTIVDVSNPHSPVLIGSYNTGPGTYSVSVS--DNRAYLVVYD-EGVLIVDVSGPSS--PTVFGSYETSNPVSIST 262 (370)
T ss_pred --CCCeEEEEccCCCCCeEEEEEecCCceEEEEec--CCeeEEEEcc-cceEEEecCCCCC--ceEeeccccCCcccccc
Confidence 34566666543222222211 12 23344443 3346666543 4677777655432 222222 12224443
Q ss_pred -EECCCCCEEEEEecCC
Q 018242 252 -KRSPRGGFWVGIHSRR 267 (359)
Q Consensus 252 -~~d~~G~lwv~~~~~~ 267 (359)
.+ ++...|++....+
T Consensus 263 v~V-s~~~~Yvadga~g 278 (370)
T COG5276 263 VPV-SGEYAYVADGAKG 278 (370)
T ss_pred eec-ccceeeeeccccC
Confidence 44 3456888776644
No 364
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=78.24 E-value=12 Score=36.57 Aligned_cols=105 Identities=11% Similarity=0.045 Sum_probs=67.5
Q ss_pred CCeEEEEeCCCcEEEEeCCCCeEEE----EeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCce
Q 018242 107 NGDLYIADAYFGLLKVGPEGGLATA----VATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGR 182 (359)
Q Consensus 107 ~g~l~v~~~~~~i~~~~~~~~~~~~----~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~ 182 (359)
.+.|++++..++|..+|.+...++. +.. .-...+.+.++.+-| |...+|+-++ ...
T Consensus 64 eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~--~~aH~nAifDl~wap-ge~~lVsasG-----------------DsT 123 (720)
T KOG0321|consen 64 EHILAVADEDGGIILFDTKSIVFRLEERQLKK--PLAHKNAIFDLKWAP-GESLLVSASG-----------------DST 123 (720)
T ss_pred cceEEEecCCCceeeecchhhhcchhhhhhcc--cccccceeEeeccCC-CceeEEEccC-----------------Cce
Confidence 5568888777778888776544330 111 111234556777777 6646776443 346
Q ss_pred EEEEeCCCCcEEE---EeCCCCCCceEEEccCCCEEEEEecCCCEEEEEEcC
Q 018242 183 LMKYDPATKQVTV---LLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLK 231 (359)
Q Consensus 183 v~~~d~~~~~~~~---~~~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~ 231 (359)
+-.||.++.++.- ..++......+||.+++..+++++..++.+..||+.
T Consensus 124 ~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R 175 (720)
T KOG0321|consen 124 IRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCR 175 (720)
T ss_pred eeeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEe
Confidence 7777777655432 223333456788988888899999999999999975
No 365
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=77.34 E-value=17 Score=35.12 Aligned_cols=73 Identities=12% Similarity=-0.012 Sum_probs=52.2
Q ss_pred CCCceEEEccCCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEE
Q 018242 34 IGPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIA 113 (359)
Q Consensus 34 ~~p~~i~~~~~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~ 113 (359)
..+.+.+.+|+...+.++..+|.|..||...+ ..+.. ...-.|.-+++.|++.-+.|+
T Consensus 260 s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~-~t~~~---------------------ka~~~P~~iaWHp~gai~~V~ 317 (545)
T PF11768_consen 260 SQVICCARSPSEDKLVLGCEDGSIILYDTTRG-VTLLA---------------------KAEFIPTLIAWHPDGAIFVVG 317 (545)
T ss_pred CcceEEecCcccceEEEEecCCeEEEEEcCCC-eeeee---------------------eecccceEEEEcCCCcEEEEE
Confidence 47778999999888999999999999998765 33221 122347889999944444455
Q ss_pred eCCCcEEEEeCCCCe
Q 018242 114 DAYFGLLKVGPEGGL 128 (359)
Q Consensus 114 ~~~~~i~~~~~~~~~ 128 (359)
+..+.|..+|..-+.
T Consensus 318 s~qGelQ~FD~ALsp 332 (545)
T PF11768_consen 318 SEQGELQCFDMALSP 332 (545)
T ss_pred cCCceEEEEEeecCc
Confidence 655668888875443
No 366
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=77.24 E-value=65 Score=30.26 Aligned_cols=105 Identities=10% Similarity=0.029 Sum_probs=60.7
Q ss_pred CeEEEEe-CCCcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEE
Q 018242 108 GDLYIAD-AYFGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKY 186 (359)
Q Consensus 108 g~l~v~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~ 186 (359)
.++.++. ..+.|..+|.++++....... ....++.+.+.+.--.+.++ ++..+.|..+
T Consensus 256 ~nVLaSgsaD~TV~lWD~~~g~p~~s~~~----~~k~Vq~l~wh~~~p~~LLs-----------------Gs~D~~V~l~ 314 (463)
T KOG0270|consen 256 RNVLASGSADKTVKLWDVDTGKPKSSITH----HGKKVQTLEWHPYEPSVLLS-----------------GSYDGTVALK 314 (463)
T ss_pred ceeEEecCCCceEEEEEcCCCCcceehhh----cCCceeEEEecCCCceEEEe-----------------ccccceEEee
Confidence 4455543 334688899998876543321 12346678887765424333 3345566666
Q ss_pred eCCC-CcEEEEeCCCCCCceEEEccCCCEEEEEecCCCEEEEEEcCCC
Q 018242 187 DPAT-KQVTVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTS 233 (359)
Q Consensus 187 d~~~-~~~~~~~~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~ 233 (359)
|-.. ........-.....-+++++.....++..+.++.|+-+|+..+
T Consensus 315 D~R~~~~s~~~wk~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~ 362 (463)
T KOG0270|consen 315 DCRDPSNSGKEWKFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNP 362 (463)
T ss_pred eccCccccCceEEeccceEEEEecCCCceeEEEecCCceEEeeecCCC
Confidence 6431 0000001111234567888877778888889999999998654
No 367
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=76.96 E-value=50 Score=28.84 Aligned_cols=156 Identities=14% Similarity=0.082 Sum_probs=78.8
Q ss_pred CCceEEEccCCCeeE-Ee--cCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEE
Q 018242 35 GPESLAFDALGEGPY-TG--VSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLY 111 (359)
Q Consensus 35 ~p~~i~~~~~G~~l~-~~--~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~ 111 (359)
.+...+++++|..+. +. .....++.....+. .... . .........+++ ++.+|
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~-~~~~--------------------~--~g~~l~~PS~d~-~g~~W 80 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGP-VRPV--------------------L--TGGSLTRPSWDP-DGWVW 80 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCc-ceee--------------------c--cCCccccccccC-CCCEE
Confidence 688999999998444 33 23456666655443 1111 0 111223345788 69999
Q ss_pred EEeCCCcEEEE--eCCCCeEEEEeecCCCcccc-ccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEE--E
Q 018242 112 IADAYFGLLKV--GPEGGLATAVATQSEGIPFR-FCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMK--Y 186 (359)
Q Consensus 112 v~~~~~~i~~~--~~~~~~~~~~~~~~~~~~~~-~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~--~ 186 (359)
+........++ +..++......-... ... .+..+.+++||.++-+.-.. ...+.|+. +
T Consensus 81 ~v~~~~~~~~~~~~~~~g~~~~~~v~~~--~~~~~I~~l~vSpDG~RvA~v~~~---------------~~~~~v~va~V 143 (253)
T PF10647_consen 81 TVDDGSGGVRVVRDSASGTGEPVEVDWP--GLRGRITALRVSPDGTRVAVVVED---------------GGGGRVYVAGV 143 (253)
T ss_pred EEEcCCCceEEEEecCCCcceeEEeccc--ccCCceEEEEECCCCcEEEEEEec---------------CCCCeEEEEEE
Confidence 98765443322 223333322211111 111 57789999999976555211 11123332 2
Q ss_pred eCCC-CcEEE------Ee-CCCCCCceEEEccCCCEEEEEecCCCEEEE-EEcC
Q 018242 187 DPAT-KQVTV------LL-GNLSFPNGVALSEDGNYILLAETTSCRILR-YWLK 231 (359)
Q Consensus 187 d~~~-~~~~~------~~-~~~~~p~gia~~~d~~~l~v~~~~~~~i~~-~~~~ 231 (359)
..+. +.-.. +. .....+..+++..++..++++......+.. +..+
T Consensus 144 ~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~V~~~~~~~~~~~~v~~d 197 (253)
T PF10647_consen 144 VRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTLVVLGRSAGGPVVRLVSVD 197 (253)
T ss_pred EeCCCCCcceeccceEecccccCcceeeeecCCCEEEEEeCCCCCceeEEEEcc
Confidence 2221 20111 11 112345688898888755555555555555 4443
No 368
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=76.06 E-value=35 Score=33.05 Aligned_cols=104 Identities=13% Similarity=0.140 Sum_probs=56.5
Q ss_pred ceEEEccCCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecC-CCeEEEEeC
Q 018242 37 ESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKT-NGDLYIADA 115 (359)
Q Consensus 37 ~~i~~~~~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~-~g~l~v~~~ 115 (359)
.++++..+|.+|..++.+-++.+||+-..+..+.- . .....+...+-|.|. ++++.++..
T Consensus 54 N~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI------------------~-TgHtaNIFsvKFvP~tnnriv~sgA 114 (758)
T KOG1310|consen 54 NCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSI------------------S-TGHTANIFSVKFVPYTNNRIVLSGA 114 (758)
T ss_pred cceeecCCCCEEeecCCcceEEeecchhcceeeee------------------e-cccccceeEEeeeccCCCeEEEecc
Confidence 47899999998888889999999999754322210 0 111122334445543 455666544
Q ss_pred CC-cEEEEeCCCCeEEEEee----cCC--CccccccceEEEeCCC-CEEEEE
Q 018242 116 YF-GLLKVGPEGGLATAVAT----QSE--GIPFRFCNSLDIDQST-GIIYFT 159 (359)
Q Consensus 116 ~~-~i~~~~~~~~~~~~~~~----~~~--~~~~~~~~~l~~d~~g-~~l~v~ 159 (359)
.+ -|..+|.+..+-.-... ... .-....+-.|+.-|++ +.+|.+
T Consensus 115 gDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~Phtfwsa 166 (758)
T KOG1310|consen 115 GDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSA 166 (758)
T ss_pred CcceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEe
Confidence 44 37777776322111100 000 0012344567777777 546665
No 369
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=75.83 E-value=60 Score=29.18 Aligned_cols=137 Identities=12% Similarity=0.140 Sum_probs=71.7
Q ss_pred ceEEEEeCCCC-cEEEEeCCCCCCceEEE-ccC--CCEEEEEecCCCEEEEEEcCCCCCcceeEeecCCCCCCceEECCC
Q 018242 181 GRLMKYDPATK-QVTVLLGNLSFPNGVAL-SED--GNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPR 256 (359)
Q Consensus 181 g~v~~~d~~~~-~~~~~~~~~~~p~gia~-~~d--~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~ 256 (359)
+.|++|.-.++ +..........|.|++- +|. ...|..-+...++|...++...+......+........-++...+
T Consensus 113 ~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~ 192 (346)
T KOG2111|consen 113 NKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQ 192 (346)
T ss_pred CeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCC
Confidence 35666554321 22222334456888754 332 223444445567888888765433211111111222345788889
Q ss_pred CCEEEEEecCCCccccccccCC-ccceeeecCCccceeeeeecccccCcceEEEEECCCCCEEEEEE
Q 018242 257 GGFWVGIHSRRKGISKLVLSFP-WIGNVLIKLPIDIVKIHSSLVKLSGNGGMAMRISEQGNVLEILE 322 (359)
Q Consensus 257 G~lwv~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 322 (359)
|.+.++....+.. +.+|+ .+|+.+..+--+.+...-++...+++ ...++...|..+++.|.
T Consensus 193 Gt~vATaStkGTL----IRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~-~s~LavsSdKgTlHiF~ 254 (346)
T KOG2111|consen 193 GTLVATASTKGTL----IRIFDTEDGTLLQELRRGVDRADIYCIAFSPN-SSWLAVSSDKGTLHIFS 254 (346)
T ss_pred ccEEEEeccCcEE----EEEEEcCCCcEeeeeecCCchheEEEEEeCCC-ccEEEEEcCCCeEEEEE
Confidence 9988877777653 66775 58888877655544333333333333 33344444444454443
No 370
>KOG0918 consensus Selenium-binding protein [Inorganic ion transport and metabolism]
Probab=75.35 E-value=11 Score=34.88 Aligned_cols=44 Identities=18% Similarity=0.238 Sum_probs=26.2
Q ss_pred ccceEEEeCCCCEEEEEeCC-CccccccceeeeeecCCCceEEEEeCC
Q 018242 143 FCNSLDIDQSTGIIYFTDSS-SQFQRRNHISVILSGDKTGRLMKYDPA 189 (359)
Q Consensus 143 ~~~~l~~d~~g~~l~v~d~~-~~~~~~~~~~~~~~~~~~g~v~~~d~~ 189 (359)
.|.-+..+-||+||||+++- ..|++.-|...+ ...+.+.++|.+
T Consensus 390 GPQMlQLSLDGKRLYVt~SLys~WD~QFYPE~v---~~G~~miqidvd 434 (476)
T KOG0918|consen 390 GPQMLQLSLDGKRLYVTNSLYSAWDRQFYPELV---SKGSHMIQIDVD 434 (476)
T ss_pred CceeEEeccCCcEEEEEchhhhhhHhhhCHHHH---hcCceEEEEeee
Confidence 56678888999999999764 234443332222 112345666654
No 371
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=75.26 E-value=54 Score=28.41 Aligned_cols=36 Identities=28% Similarity=0.644 Sum_probs=25.7
Q ss_pred CCCc-eEEEcc--CCCeeEEecCCCEEEEEEcCCcceEE
Q 018242 34 IGPE-SLAFDA--LGEGPYTGVSDGRIIKWHQDQRRWLH 69 (359)
Q Consensus 34 ~~p~-~i~~~~--~G~~l~~~~~~~~i~~~d~~~~~~~~ 69 (359)
.+|. -+++.. -|.+|..+.+++.+..|...++.|..
T Consensus 56 ~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~w~k 94 (299)
T KOG1332|consen 56 SGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGRWTK 94 (299)
T ss_pred CCCeeEEeecccccCcEeeEeecCceEEEEecCCCchhh
Confidence 3443 444443 48878888899999999988876654
No 372
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=73.81 E-value=69 Score=28.89 Aligned_cols=60 Identities=10% Similarity=0.139 Sum_probs=36.7
Q ss_pred ceEEEccCCCeeEEecCCCEEEEEEc-CCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEEe
Q 018242 37 ESLAFDALGEGPYTGVSDGRIIKWHQ-DQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIAD 114 (359)
Q Consensus 37 ~~i~~~~~G~~l~~~~~~~~i~~~d~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~~ 114 (359)
.+|.+.+..+.+..+..+..-|.|.+ ++++|+... .+-.......++..+|.++.+.++.
T Consensus 59 tgvdWap~snrIvtcs~drnayVw~~~~~~~Wkptl------------------vLlRiNrAAt~V~WsP~enkFAVgS 119 (361)
T KOG1523|consen 59 TGVDWAPKSNRIVTCSHDRNAYVWTQPSGGTWKPTL------------------VLLRINRAATCVKWSPKENKFAVGS 119 (361)
T ss_pred eEEeecCCCCceeEccCCCCccccccCCCCeeccce------------------eEEEeccceeeEeecCcCceEEecc
Confidence 36777777655777766666777776 556555322 3334445567888999444444444
No 373
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=73.76 E-value=42 Score=30.38 Aligned_cols=77 Identities=18% Similarity=0.180 Sum_probs=47.7
Q ss_pred CceEEEEeCCCCcEE-EEeCCCCCCceEEEccCCCEEEEEecCCCEEEEEEcCCCCCcceeEeec--CCCCCCceEECCC
Q 018242 180 TGRLMKYDPATKQVT-VLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQ--LPGFPDNIKRSPR 256 (359)
Q Consensus 180 ~g~v~~~d~~~~~~~-~~~~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~--~~~~p~~i~~d~~ 256 (359)
.+.|..++...-+.. .+..+..+-..+.++|||+.++.+....-+|.+|.+...+ ..+.. ..+ ..++++.++
T Consensus 70 ~~~vqvwsl~Qpew~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~----~~~~~~pK~~-~kg~~f~~d 144 (447)
T KOG4497|consen 70 DPKVQVWSLVQPEWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQK----GYLLPHPKTN-VKGYAFHPD 144 (447)
T ss_pred cceEEEEEeecceeEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccce----eEEecccccC-ceeEEECCC
Confidence 345666665422222 2333444456788999998888877788899999875421 12222 223 378899999
Q ss_pred CCEEE
Q 018242 257 GGFWV 261 (359)
Q Consensus 257 G~lwv 261 (359)
|+.-.
T Consensus 145 g~f~a 149 (447)
T KOG4497|consen 145 GQFCA 149 (447)
T ss_pred Cceee
Confidence 97544
No 374
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=73.13 E-value=93 Score=30.13 Aligned_cols=122 Identities=12% Similarity=0.173 Sum_probs=58.5
Q ss_pred EEEecCCCeEEEEeCCCcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCC
Q 018242 101 LCFNKTNGDLYIADAYFGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKT 180 (359)
Q Consensus 101 i~~~~~~g~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~ 180 (359)
+...+ +|++++... ..+..+|..+...... . .+......-+++...++|+.|+++... ...... .......
T Consensus 153 ~~~l~-nG~ll~~~~-~~~~e~D~~G~v~~~~-~-l~~~~~~~HHD~~~l~nGn~L~l~~~~-~~~~~~----~~~~~~~ 223 (477)
T PF05935_consen 153 FKQLP-NGNLLIGSG-NRLYEIDLLGKVIWEY-D-LPGGYYDFHHDIDELPNGNLLILASET-KYVDED----KDVDTVE 223 (477)
T ss_dssp EEE-T-TS-EEEEEB-TEEEEE-TT--EEEEE-E---TTEE-B-S-EEE-TTS-EEEEEEET-TEE-TS-----EE---S
T ss_pred eeEcC-CCCEEEecC-CceEEEcCCCCEEEee-e-cCCcccccccccEECCCCCEEEEEeec-ccccCC----CCccEec
Confidence 44555 888888764 6799999987654432 2 121112345789999999955555310 000000 0011122
Q ss_pred ceEEEEeCCCCcEEEEe---CC-------------------------CCCCceEEEccCCCEEEEEecCCCEEEEEEcCC
Q 018242 181 GRLMKYDPATKQVTVLL---GN-------------------------LSFPNGVALSEDGNYILLAETTSCRILRYWLKT 232 (359)
Q Consensus 181 g~v~~~d~~~~~~~~~~---~~-------------------------~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~ 232 (359)
-.|..+| .+|++.... .. ....|++.+++....++++....+.|++++...
T Consensus 224 D~Ivevd-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~yd~~dd~iivSsR~~s~V~~Id~~t 302 (477)
T PF05935_consen 224 DVIVEVD-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSIDYDPSDDSIIVSSRHQSAVIKIDYRT 302 (477)
T ss_dssp -EEEEE--TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEEEEEETTTTEEEEEETTT-EEEEEE-TT
T ss_pred CEEEEEC-CCCCEEEEEehHHhCCcccccccccccccccccCCCCCCccccCccEEeCCCCeEEEEcCcceEEEEEECCC
Confidence 3477777 445554321 00 012368888885667999998888999999443
No 375
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=73.12 E-value=95 Score=30.24 Aligned_cols=117 Identities=12% Similarity=0.075 Sum_probs=68.2
Q ss_pred CcceEEEEecCCCeEEEEeCC-CcEEEEeCCCCeEEEEeecCCCccccccceEEEeCC-CCEEEEEeCCCccccccceee
Q 018242 96 GRPLGLCFNKTNGDLYIADAY-FGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQS-TGIIYFTDSSSQFQRRNHISV 173 (359)
Q Consensus 96 ~~p~gi~~~~~~g~l~v~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~-g~~l~v~d~~~~~~~~~~~~~ 173 (359)
+=...+.+.. +|.+.++... ..+..+|+-..+..+...+.. ...+..+.+-|. ++++.++-.+
T Consensus 51 GCVN~LeWn~-dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgH---taNIFsvKFvP~tnnriv~sgAg----------- 115 (758)
T KOG1310|consen 51 GCVNCLEWNA-DGELLASGSDDTRLIVWDPFEYKLLHSISTGH---TANIFSVKFVPYTNNRIVLSGAG----------- 115 (758)
T ss_pred ceecceeecC-CCCEEeecCCcceEEeecchhcceeeeeeccc---ccceeEEeeeccCCCeEEEeccC-----------
Confidence 3356677887 8888887543 368888887665544433221 123444455443 3347776332
Q ss_pred eeecCCCceEEEEeCCCCcEEEEeCC-----------CCCCceEEEccCCCEEEEEecCCCEEEEEEcCCC
Q 018242 174 ILSGDKTGRLMKYDPATKQVTVLLGN-----------LSFPNGVALSEDGNYILLAETTSCRILRYWLKTS 233 (359)
Q Consensus 174 ~~~~~~~g~v~~~d~~~~~~~~~~~~-----------~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~ 233 (359)
...|..+|.+..+-.-...+ .....-||-.|++-..+|+.+.+++|..||+..+
T Consensus 116 ------Dk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREp 180 (758)
T KOG1310|consen 116 ------DKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREP 180 (758)
T ss_pred ------cceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCC
Confidence 34577777653111111111 1223456777777568999999999999998654
No 376
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=72.87 E-value=76 Score=28.99 Aligned_cols=49 Identities=20% Similarity=0.347 Sum_probs=28.0
Q ss_pred CCeEEEEeCC------------CcEEEEeCCCCeEEEEeecCCCccccccceEEE-eCCCCEEEEE
Q 018242 107 NGDLYIADAY------------FGLLKVGPEGGLATAVATQSEGIPFRFCNSLDI-DQSTGIIYFT 159 (359)
Q Consensus 107 ~g~l~v~~~~------------~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-d~~g~~l~v~ 159 (359)
+++||+.... ..+.+||+.+++++.+.... +.......++ .-+|+ ||+.
T Consensus 63 ~~~iYv~GG~~~~~~~~~~~~~~~v~~Yd~~~~~W~~~~~~~---p~~~~~~~~~~~~~g~-IYvi 124 (346)
T TIGR03547 63 DGKLYVFGGIGKANSEGSPQVFDDVYRYDPKKNSWQKLDTRS---PVGLLGASGFSLHNGQ-AYFT 124 (346)
T ss_pred CCEEEEEeCCCCCCCCCcceecccEEEEECCCCEEecCCCCC---CCcccceeEEEEeCCE-EEEE
Confidence 7889986431 23788999998887654211 1111111122 34677 9987
No 377
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=72.63 E-value=64 Score=28.05 Aligned_cols=128 Identities=15% Similarity=0.235 Sum_probs=62.9
Q ss_pred EEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCC--CcEEEE
Q 018242 119 LLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPAT--KQVTVL 196 (359)
Q Consensus 119 i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~--~~~~~~ 196 (359)
-..||+.+++++.+... ...+..+-++.+||+ +.++--. . .....+..+++.+ +.....
T Consensus 48 s~~yD~~tn~~rpl~v~----td~FCSgg~~L~dG~-ll~tGG~--~------------~G~~~ir~~~p~~~~~~~~w~ 108 (243)
T PF07250_consen 48 SVEYDPNTNTFRPLTVQ----TDTFCSGGAFLPDGR-LLQTGGD--N------------DGNKAIRIFTPCTSDGTCDWT 108 (243)
T ss_pred EEEEecCCCcEEeccCC----CCCcccCcCCCCCCC-EEEeCCC--C------------ccccceEEEecCCCCCCCCce
Confidence 35678888888765321 123555667778999 6655110 0 0112355566543 111111
Q ss_pred --e----CCCCCCceEEEccCCCEEEEEecCCCEEEEEEcCCCCCcceeE-ee-c-CCCCCCc----eEECCCCCEEEEE
Q 018242 197 --L----GNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEI-VA-Q-LPGFPDN----IKRSPRGGFWVGI 263 (359)
Q Consensus 197 --~----~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~-~~-~-~~~~p~~----i~~d~~G~lwv~~ 263 (359)
. ..-..|....+ +||+.+++.++.......+............ +. . ....+.+ +.+-++|+|++..
T Consensus 109 e~~~~m~~~RWYpT~~~L-~DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~a 187 (243)
T PF07250_consen 109 ESPNDMQSGRWYPTATTL-PDGRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFA 187 (243)
T ss_pred ECcccccCCCccccceEC-CCCCEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEE
Confidence 1 11223444444 7999888877765443333321111111111 11 1 1123444 5667899999866
Q ss_pred ecC
Q 018242 264 HSR 266 (359)
Q Consensus 264 ~~~ 266 (359)
...
T Consensus 188 n~~ 190 (243)
T PF07250_consen 188 NRG 190 (243)
T ss_pred cCC
Confidence 543
No 378
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=72.50 E-value=13 Score=21.82 Aligned_cols=26 Identities=27% Similarity=0.391 Sum_probs=17.4
Q ss_pred ceEEEccCCCeeEEecCCCEEEEEEcCC
Q 018242 37 ESLAFDALGEGPYTGVSDGRIIKWHQDQ 64 (359)
Q Consensus 37 ~~i~~~~~G~~l~~~~~~~~i~~~d~~~ 64 (359)
.+++++ +|. +|+++.++.++.+|+++
T Consensus 15 ~~~~v~-~g~-vyv~~~dg~l~ald~~t 40 (40)
T PF13570_consen 15 SSPAVA-GGR-VYVGTGDGNLYALDAAT 40 (40)
T ss_dssp S--EEC-TSE-EEEE-TTSEEEEEETT-
T ss_pred cCCEEE-CCE-EEEEcCCCEEEEEeCCC
Confidence 344554 455 99999999999999864
No 379
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []. Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding
Probab=72.27 E-value=67 Score=28.09 Aligned_cols=156 Identities=13% Similarity=0.070 Sum_probs=80.3
Q ss_pred CCCeeEEecCCCEEEEEEcCCcceE-EEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEEeC---CCc-
Q 018242 44 LGEGPYTGVSDGRIIKWHQDQRRWL-HFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIADA---YFG- 118 (359)
Q Consensus 44 ~G~~l~~~~~~~~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~~~---~~~- 118 (359)
+|.++|-......|.++|+.++... ....+.+... ... .-....-..+.+.-|++-|||.-. ..+
T Consensus 78 ngslYY~~~~s~~IvkydL~t~~v~~~~~L~~A~~~-n~~---------~y~~~~~t~iD~AvDE~GLWvIYat~~~~g~ 147 (250)
T PF02191_consen 78 NGSLYYNKYNSRNIVKYDLTTRSVVARRELPGAGYN-NRF---------PYYWSGYTDIDFAVDENGLWVIYATEDNNGN 147 (250)
T ss_pred CCcEEEEecCCceEEEEECcCCcEEEEEECCccccc-ccc---------ceecCCCceEEEEEcCCCEEEEEecCCCCCc
Confidence 5666666666689999999987665 3221111100 000 000011123444444677887622 223
Q ss_pred --EEEEeCCCCeEEEEee-cCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCce-EEEEeCCCCcEE
Q 018242 119 --LLKVGPEGGLATAVAT-QSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGR-LMKYDPATKQVT 194 (359)
Q Consensus 119 --i~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~-v~~~d~~~~~~~ 194 (359)
|.++|+++-.++..-. ...... .-+. +--=|- ||++++... .... -+.+|..+++.+
T Consensus 148 ivvskld~~tL~v~~tw~T~~~k~~--~~na--FmvCGv-LY~~~s~~~--------------~~~~I~yafDt~t~~~~ 208 (250)
T PF02191_consen 148 IVVSKLDPETLSVEQTWNTSYPKRS--AGNA--FMVCGV-LYATDSYDT--------------RDTEIFYAFDTYTGKEE 208 (250)
T ss_pred EEEEeeCcccCceEEEEEeccCchh--hcce--eeEeeE-EEEEEECCC--------------CCcEEEEEEECCCCcee
Confidence 6678887766543322 222111 1112 222355 888865421 1123 456888776555
Q ss_pred EEe----CCCCCCceEEEccCCCEEEEEecCCCEEEEEEc
Q 018242 195 VLL----GNLSFPNGVALSEDGNYILLAETTSCRILRYWL 230 (359)
Q Consensus 195 ~~~----~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~ 230 (359)
.+. ........+.++|..+.||+-+. +.+..|++
T Consensus 209 ~~~i~f~~~~~~~~~l~YNP~dk~LY~wd~--G~~v~Y~v 246 (250)
T PF02191_consen 209 DVSIPFPNPYGNISMLSYNPRDKKLYAWDN--GYQVTYDV 246 (250)
T ss_pred ceeeeeccccCceEeeeECCCCCeEEEEEC--CeEEEEEE
Confidence 332 12233457788887778888753 55666664
No 380
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=72.23 E-value=1.1e+02 Score=30.60 Aligned_cols=104 Identities=18% Similarity=0.230 Sum_probs=62.0
Q ss_pred eEEEccCCCeeEEecCCCEEEEEEcCCcc--eEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEEeC
Q 018242 38 SLAFDALGEGPYTGVSDGRIIKWHQDQRR--WLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIADA 115 (359)
Q Consensus 38 ~i~~~~~G~~l~~~~~~~~i~~~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~~~ 115 (359)
++-+.|++..|..++.+..++.|.|+.+. |.-.-.. + +.........|..+.+ +++.+++..
T Consensus 272 sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRl--------G-------e~gg~a~GF~g~lw~~-n~~~ii~~g 335 (764)
T KOG1063|consen 272 SVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRL--------G-------EVGGSAGGFWGGLWSP-NSNVIIAHG 335 (764)
T ss_pred EEEEccchhhheecccCcceEEEecCCccceEEEEEEe--------e-------cccccccceeeEEEcC-CCCEEEEec
Confidence 56677888668888899999999987652 3221100 0 1111122245667888 888888865
Q ss_pred CC-cEEEEeC-CCCeEEEEeecCCCccccccceEEEeCCCCEEEEEe
Q 018242 116 YF-GLLKVGP-EGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTD 160 (359)
Q Consensus 116 ~~-~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d 160 (359)
.. +...+.. +....+... ........+.+++++|.|. ++++.
T Consensus 336 ~~Gg~hlWkt~d~~~w~~~~--~iSGH~~~V~dv~W~psGe-flLsv 379 (764)
T KOG1063|consen 336 RTGGFHLWKTKDKTFWTQEP--VISGHVDGVKDVDWDPSGE-FLLSV 379 (764)
T ss_pred ccCcEEEEeccCccceeecc--ccccccccceeeeecCCCC-EEEEe
Confidence 54 4665552 223332211 1112345778999999999 66763
No 381
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=71.73 E-value=8.1 Score=22.49 Aligned_cols=22 Identities=23% Similarity=0.403 Sum_probs=18.9
Q ss_pred eEEecCCCEEEEEEcCCcceEE
Q 018242 48 PYTGVSDGRIIKWHQDQRRWLH 69 (359)
Q Consensus 48 l~~~~~~~~i~~~d~~~~~~~~ 69 (359)
+|+++.+|.|+.+|.++++...
T Consensus 3 v~~~~~~g~l~AlD~~TG~~~W 24 (38)
T PF01011_consen 3 VYVGTPDGYLYALDAKTGKVLW 24 (38)
T ss_dssp EEEETTTSEEEEEETTTTSEEE
T ss_pred EEEeCCCCEEEEEECCCCCEEE
Confidence 7888999999999999987554
No 382
>smart00284 OLF Olfactomedin-like domains.
Probab=71.64 E-value=70 Score=28.04 Aligned_cols=164 Identities=12% Similarity=0.106 Sum_probs=80.6
Q ss_pred CCCceEEEccCCCeeEEecCCCEEEEEEcCCcceEEEeecCC-CCCCCCCCcccccccccccCCcceEEEEecCCCeEEE
Q 018242 34 IGPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSP-NRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYI 112 (359)
Q Consensus 34 ~~p~~i~~~~~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v 112 (359)
.+.--+.. +|.++|--.....|.++|+.++........+. ... . ...-..+....|.+.-|++-||+
T Consensus 75 ~GtG~VVY--ngslYY~~~~s~~iiKydL~t~~v~~~~~Lp~a~y~-~---------~~~Y~~~~~sdiDlAvDE~GLWv 142 (255)
T smart00284 75 QGTGVVVY--NGSLYFNKFNSHDICRFDLTTETYQKEPLLNGAGYN-N---------RFPYAWGGFSDIDLAVDENGLWV 142 (255)
T ss_pred ccccEEEE--CceEEEEecCCccEEEEECCCCcEEEEEecCccccc-c---------ccccccCCCccEEEEEcCCceEE
Confidence 34434443 36655544455689999999876543332110 000 0 00000011223444444677887
Q ss_pred EeC--C-Cc---EEEEeCCCCeEEEEeec-CCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCce-EE
Q 018242 113 ADA--Y-FG---LLKVGPEGGLATAVATQ-SEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGR-LM 184 (359)
Q Consensus 113 ~~~--~-~~---i~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~-v~ 184 (359)
.-. . .| |.++|+.+=.++..-.. ..... .-+.+.+ =|. ||++++.. ..... -+
T Consensus 143 IYat~~~~g~ivvSkLnp~tL~ve~tW~T~~~k~s--a~naFmv--CGv-LY~~~s~~--------------~~~~~I~y 203 (255)
T smart00284 143 IYATEQNAGKIVISKLNPATLTIENTWITTYNKRS--ASNAFMI--CGI-LYVTRSLG--------------SKGEKVFY 203 (255)
T ss_pred EEeccCCCCCEEEEeeCcccceEEEEEEcCCCccc--ccccEEE--eeE-EEEEccCC--------------CCCcEEEE
Confidence 622 2 23 45888877655433222 21111 1122221 255 99986531 11223 45
Q ss_pred EEeCCCCcEEEEeCC----CCCCceEEEccCCCEEEEEecCCCEEEEEEc
Q 018242 185 KYDPATKQVTVLLGN----LSFPNGVALSEDGNYILLAETTSCRILRYWL 230 (359)
Q Consensus 185 ~~d~~~~~~~~~~~~----~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~ 230 (359)
.+|..+++.....-. ......+.+.|..+.||+-+ ++.+..|++
T Consensus 204 ayDt~t~~~~~~~i~f~n~y~~~s~l~YNP~d~~LY~wd--ng~~l~Y~v 251 (255)
T smart00284 204 AYDTNTGKEGHLDIPFENMYEYISMLDYNPNDRKLYAWN--NGHLVHYDI 251 (255)
T ss_pred EEECCCCccceeeeeeccccccceeceeCCCCCeEEEEe--CCeEEEEEE
Confidence 688887654433211 22234577888777788865 456666764
No 383
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=71.15 E-value=9.8 Score=20.95 Aligned_cols=24 Identities=21% Similarity=0.378 Sum_probs=19.3
Q ss_pred cCCCeeEEecCCCEEEEEEcCCcce
Q 018242 43 ALGEGPYTGVSDGRIIKWHQDQRRW 67 (359)
Q Consensus 43 ~~G~~l~~~~~~~~i~~~d~~~~~~ 67 (359)
.+|. +|++..++.++.+|.++++.
T Consensus 5 ~~~~-v~~~~~~g~l~a~d~~~G~~ 28 (33)
T smart00564 5 SDGT-VYVGSTDGTLYALDAKTGEI 28 (33)
T ss_pred ECCE-EEEEcCCCEEEEEEcccCcE
Confidence 4565 88888889999999987743
No 384
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=71.08 E-value=88 Score=31.26 Aligned_cols=63 Identities=17% Similarity=0.219 Sum_probs=36.1
Q ss_pred CCceEEEccCCCeeEEecC-----CCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCe
Q 018242 35 GPESLAFDALGEGPYTGVS-----DGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGD 109 (359)
Q Consensus 35 ~p~~i~~~~~G~~l~~~~~-----~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~ 109 (359)
.-.+++.+|+|+++..+.. ...|+.|+..+ |.... .+....-....|+|++ +++
T Consensus 527 Ev~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~--W~~~~------------------~L~~HsLTVT~l~FSp-dg~ 585 (764)
T KOG1063|consen 527 EVYALAISPTGNLIASACKSSLKEHAVIRLWNTAN--WLQVQ------------------ELEGHSLTVTRLAFSP-DGR 585 (764)
T ss_pred eEEEEEecCCCCEEeehhhhCCccceEEEEEeccc--hhhhh------------------eecccceEEEEEEECC-CCc
Confidence 4458899999995544432 25778887543 22211 1222222356799999 666
Q ss_pred EEEEeCCCc
Q 018242 110 LYIADAYFG 118 (359)
Q Consensus 110 l~v~~~~~~ 118 (359)
..++...++
T Consensus 586 ~LLsvsRDR 594 (764)
T KOG1063|consen 586 YLLSVSRDR 594 (764)
T ss_pred EEEEeecCc
Confidence 666544444
No 385
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=70.22 E-value=17 Score=34.92 Aligned_cols=54 Identities=13% Similarity=-0.003 Sum_probs=33.0
Q ss_pred CcceEEEEecCCCeEEEEeCCCc-EEEEeCCCCeEEEEeecCCCccccccceEEEeCCCC
Q 018242 96 GRPLGLCFNKTNGDLYIADAYFG-LLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTG 154 (359)
Q Consensus 96 ~~p~gi~~~~~~g~l~v~~~~~~-i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~ 154 (359)
+.++.++|++ ||....+..++| |..++.++-++.-+.. ..+...--++++|||+
T Consensus 291 g~in~f~FS~-DG~~LA~VSqDGfLRvF~fdt~eLlg~mk----SYFGGLLCvcWSPDGK 345 (636)
T KOG2394|consen 291 GSINEFAFSP-DGKYLATVSQDGFLRIFDFDTQELLGVMK----SYFGGLLCVCWSPDGK 345 (636)
T ss_pred ccccceeEcC-CCceEEEEecCceEEEeeccHHHHHHHHH----hhccceEEEEEcCCcc
Confidence 3466788999 666666655665 6666776544321111 1233444678999999
No 386
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=67.47 E-value=92 Score=27.79 Aligned_cols=152 Identities=16% Similarity=0.175 Sum_probs=81.3
Q ss_pred CCcceEEEEecCCCeEEEEeCCCc-EEEEeCCCCeEEEE-eecCCCccccccceEEEeCCCCEEEEEeCCCcccccccee
Q 018242 95 CGRPLGLCFNKTNGDLYIADAYFG-LLKVGPEGGLATAV-ATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHIS 172 (359)
Q Consensus 95 ~~~p~gi~~~~~~g~l~v~~~~~~-i~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~ 172 (359)
..+.+.|+|.....++|++...+| +..||...-+...+ ++... +....-.+.+.++.- -|.+...
T Consensus 196 DKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~--~~~pLlRLswnkqDp-nymATf~---------- 262 (364)
T KOG0290|consen 196 DKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPS--PSTPLLRLSWNKQDP-NYMATFA---------- 262 (364)
T ss_pred CcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCC--CCCcceeeccCcCCc-hHHhhhh----------
Confidence 355788999986677888765555 77788876544332 22111 111223455554433 2333221
Q ss_pred eeeecCCCceEEEEeCCCC--cEEEEeCCCCCCceEEEccCCCEEEEEecCCCEEEEEEcCCCCC--cceeEee-cCCCC
Q 018242 173 VILSGDKTGRLMKYDPATK--QVTVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKA--GTIEIVA-QLPGF 247 (359)
Q Consensus 173 ~~~~~~~~g~v~~~d~~~~--~~~~~~~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~--~~~~~~~-~~~~~ 247 (359)
.....|..+|..-- -+..+..+....|||++.|....-+.+.-++.+...||+..... ..-..+. ..++.
T Consensus 263 -----~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPilay~a~~E 337 (364)
T KOG0290|consen 263 -----MDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPILAYTAGGE 337 (364)
T ss_pred -----cCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEecccccccCCCCchhhhhccce
Confidence 11235666664311 12223344566799999998766677777788888999864311 1000111 12334
Q ss_pred CCceEECCCCCEEEEEe
Q 018242 248 PDNIKRSPRGGFWVGIH 264 (359)
Q Consensus 248 p~~i~~d~~G~lwv~~~ 264 (359)
.+++.+.+...=|++.-
T Consensus 338 VNqi~Ws~~~~Dwiai~ 354 (364)
T KOG0290|consen 338 VNQIQWSSSQPDWIAIC 354 (364)
T ss_pred eeeeeecccCCCEEEEE
Confidence 56677765444555443
No 387
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=66.93 E-value=1.6e+02 Score=30.46 Aligned_cols=143 Identities=16% Similarity=0.157 Sum_probs=73.7
Q ss_pred cceEEEEecCCCeEEEEeC--CCcEEEEeCCCCeEEEEeecCCCccccccceEEEeC------CCCEEEEEeCCCccccc
Q 018242 97 RPLGLCFNKTNGDLYIADA--YFGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQ------STGIIYFTDSSSQFQRR 168 (359)
Q Consensus 97 ~p~gi~~~~~~g~l~v~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~------~g~~l~v~d~~~~~~~~ 168 (359)
.|..+.+..++.++.+-+. .+.|+++|++.|++..--......+ +.+++-+. ... .|++-+
T Consensus 482 ~P~k~mL~~~d~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~---v~~~~p~~K~aqlt~e~-tflGls------- 550 (794)
T PF08553_consen 482 TPKKAMLHDQDRNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIP---VVDIAPDSKFAQLTNEQ-TFLGLS------- 550 (794)
T ss_pred CcchhhhhccccceEeecCCCCCceEEEecCCCcEEEEeecCCCcc---eeEecccccccccCCCc-eEEEEC-------
Confidence 3555555555777777654 3579999999998643222111111 22222111 112 455521
Q ss_pred cceeeeeecCCCceEEEEeCCCCcEEEEe---CCC-CC--CceEEEccCCCEEEEEecCCCEEEEEEcCCCCCcceeEee
Q 018242 169 NHISVILSGDKTGRLMKYDPATKQVTVLL---GNL-SF--PNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVA 242 (359)
Q Consensus 169 ~~~~~~~~~~~~g~v~~~d~~~~~~~~~~---~~~-~~--p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~ 242 (359)
...++++||.-..-..+. ..+ .. -..+|-+.+|. ++.++..+.|..|+..+.+ ....+.
T Consensus 551 -----------~n~lfriDpR~~~~k~v~~~~k~Y~~~~~Fs~~aTt~~G~--iavgs~~G~IRLyd~~g~~--AKT~lp 615 (794)
T PF08553_consen 551 -----------DNSLFRIDPRLSGNKLVDSQSKQYSSKNNFSCFATTEDGY--IAVGSNKGDIRLYDRLGKR--AKTALP 615 (794)
T ss_pred -----------CCceEEeccCCCCCceeeccccccccCCCceEEEecCCce--EEEEeCCCcEEeecccchh--hhhcCC
Confidence 236999998632211111 111 11 23556666664 4555677889989743211 111111
Q ss_pred cCCCCCCceEECCCCCEEEEEec
Q 018242 243 QLPGFPDNIKRSPRGGFWVGIHS 265 (359)
Q Consensus 243 ~~~~~p~~i~~d~~G~lwv~~~~ 265 (359)
.++.-.-+|.+..||+..+|+..
T Consensus 616 ~lG~pI~~iDvt~DGkwilaTc~ 638 (794)
T PF08553_consen 616 GLGDPIIGIDVTADGKWILATCK 638 (794)
T ss_pred CCCCCeeEEEecCCCcEEEEeec
Confidence 12222367899999987777765
No 388
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=65.65 E-value=1.4e+02 Score=29.21 Aligned_cols=70 Identities=13% Similarity=0.148 Sum_probs=49.1
Q ss_pred ccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCCcEEEEeCCCCCCceEEEccCCCEEEEEecCC
Q 018242 143 FCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQVTVLLGNLSFPNGVALSEDGNYILLAETTS 222 (359)
Q Consensus 143 ~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~p~gia~~~d~~~l~v~~~~~ 222 (359)
.+...+.+|+..++.++- -+|.|..||...+..... .....|.-+++.|+|. +++..+..
T Consensus 261 ~v~~ca~sp~E~kLvlGC------------------~DgSiiLyD~~~~~t~~~-ka~~~P~~iaWHp~ga-i~~V~s~q 320 (545)
T PF11768_consen 261 QVICCARSPSEDKLVLGC------------------EDGSIILYDTTRGVTLLA-KAEFIPTLIAWHPDGA-IFVVGSEQ 320 (545)
T ss_pred cceEEecCcccceEEEEe------------------cCCeEEEEEcCCCeeeee-eecccceEEEEcCCCc-EEEEEcCC
Confidence 344567777766566662 256799999876544433 3345699999999998 56666677
Q ss_pred CEEEEEEcCC
Q 018242 223 CRILRYWLKT 232 (359)
Q Consensus 223 ~~i~~~~~~~ 232 (359)
+.|..||+.-
T Consensus 321 GelQ~FD~AL 330 (545)
T PF11768_consen 321 GELQCFDMAL 330 (545)
T ss_pred ceEEEEEeec
Confidence 8999999753
No 389
>PF09910 DUF2139: Uncharacterized protein conserved in archaea (DUF2139); InterPro: IPR016675 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=64.20 E-value=1.1e+02 Score=27.48 Aligned_cols=88 Identities=13% Similarity=0.170 Sum_probs=54.2
Q ss_pred CCCCceEEEccCCCeeEEecCC--CEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeE
Q 018242 33 AIGPESLAFDALGEGPYTGVSD--GRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDL 110 (359)
Q Consensus 33 ~~~p~~i~~~~~G~~l~~~~~~--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l 110 (359)
+-.|....-..+|+ -.++..+ ..|+.+|.+.++++.+=...-+ ....-.++..-|.+||-++.|
T Consensus 55 VHAPa~y~gk~~g~-~~IdF~NKYSHVH~yd~e~~~VrLLWkesih-------------~~~~WaGEVSdIlYdP~~D~L 120 (339)
T PF09910_consen 55 VHAPAVYEGKGDGR-ATIDFRNKYSHVHEYDTENDSVRLLWKESIH-------------DKTKWAGEVSDILYDPYEDRL 120 (339)
T ss_pred ecCCceeeeccCCc-eEEEEeeccceEEEEEcCCCeEEEEEecccC-------------CccccccchhheeeCCCcCEE
Confidence 44555555545554 3333333 5788999777765543211100 012233567789999999999
Q ss_pred EEEeCCC----cEEEEeCCCCeEEEEee
Q 018242 111 YIADAYF----GLLKVGPEGGLATAVAT 134 (359)
Q Consensus 111 ~v~~~~~----~i~~~~~~~~~~~~~~~ 134 (359)
+++-..+ ||+.++.++|+.+.+..
T Consensus 121 LlAR~DGh~nLGvy~ldr~~g~~~~L~~ 148 (339)
T PF09910_consen 121 LLARADGHANLGVYSLDRRTGKAEKLSS 148 (339)
T ss_pred EEEecCCcceeeeEEEcccCCceeeccC
Confidence 9985432 79999999999877654
No 390
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=63.70 E-value=75 Score=30.83 Aligned_cols=157 Identities=17% Similarity=0.226 Sum_probs=74.9
Q ss_pred ceEEEccCCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEEeCC
Q 018242 37 ESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIADAY 116 (359)
Q Consensus 37 ~~i~~~~~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~~~~ 116 (359)
+.+++++....|..+..+|.++.|++......+|. .....+.|..+.+-..+=.+-+++..
T Consensus 400 w~l~~s~~~~~Llscs~DgTvr~w~~~~~~~~~f~-------------------~~~e~g~Plsvd~~ss~~a~~~~s~~ 460 (577)
T KOG0642|consen 400 WLLALSSTKDRLLSCSSDGTVRLWEPTEESPCTFG-------------------EPKEHGYPLSVDRTSSRPAHSLASFR 460 (577)
T ss_pred eeeeecccccceeeecCCceEEeeccCCcCccccC-------------------CccccCCcceEeeccchhHhhhhhcc
Confidence 46666666555777777888998887655332232 11222446555544312112222222
Q ss_pred CcEEEE-eCCCCeEEEEeec--CCC-ccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCCc
Q 018242 117 FGLLKV-GPEGGLATAVATQ--SEG-IPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQ 192 (359)
Q Consensus 117 ~~i~~~-~~~~~~~~~~~~~--~~~-~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~ 192 (359)
.+.+.+ +.+...-..+... .++ .....++-++..+.+- +-++. .....|-.+|..++.
T Consensus 461 ~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~-~~~~~-----------------hed~~Ir~~dn~~~~ 522 (577)
T KOG0642|consen 461 FGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTAD-ITFTA-----------------HEDRSIRFFDNKTGK 522 (577)
T ss_pred cccccchhhhhhhheeeccccCCCcccccCccceEEecCCCC-eeEec-----------------ccCCceecccccccc
Confidence 222211 2222211111111 111 1123455666677766 54441 113356666655443
Q ss_pred EEE-EeCCCCCCceEEEccCCCEEEEEecCCCEEEEEEcC
Q 018242 193 VTV-LLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLK 231 (359)
Q Consensus 193 ~~~-~~~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~ 231 (359)
... .........++|++|.|-+ +.+.+-++++..+.++
T Consensus 523 ~l~s~~a~~~svtslai~~ng~~-l~s~s~d~sv~l~kld 561 (577)
T KOG0642|consen 523 ILHSMVAHKDSVTSLAIDPNGPY-LMSGSHDGSVRLWKLD 561 (577)
T ss_pred cchheeeccceecceeecCCCce-EEeecCCceeehhhcc
Confidence 321 1122334578999988853 4455556677766654
No 391
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=59.24 E-value=1.3e+02 Score=26.86 Aligned_cols=116 Identities=16% Similarity=0.117 Sum_probs=57.1
Q ss_pred CeEEEEeC-CCcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEE
Q 018242 108 GDLYIADA-YFGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKY 186 (359)
Q Consensus 108 g~l~v~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~ 186 (359)
..|..+.. .-.|...|+..|...+...-.. ..+-++.+.|...++..+ .+.+..-+-| .+ ....|+....
T Consensus 158 HcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr----~~vlaV~Wsp~~e~vLat-gsaDg~irlW--Di--Rrasgcf~~l 228 (397)
T KOG4283|consen 158 HCLIAAGTRDVQVRLCDIASGSFSHTLSGHR----DGVLAVEWSPSSEWVLAT-GSADGAIRLW--DI--RRASGCFRVL 228 (397)
T ss_pred ceEEEEecCCCcEEEEeccCCcceeeecccc----CceEEEEeccCceeEEEe-cCCCceEEEE--Ee--ecccceeEEe
Confidence 44444332 2357788998888766543111 234566777877733333 1111000000 00 0112344444
Q ss_pred eCCCCcEEEEeC----CCCCCceEEEccCCCEEEEEecCCCEEEEEEcCCC
Q 018242 187 DPATKQVTVLLG----NLSFPNGVALSEDGNYILLAETTSCRILRYWLKTS 233 (359)
Q Consensus 187 d~~~~~~~~~~~----~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~ 233 (359)
|...++..+... .....+|+|++.|+.+++... .++++..|+...+
T Consensus 229 D~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~g-td~r~r~wn~~~G 278 (397)
T KOG4283|consen 229 DQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCG-TDDRIRVWNMESG 278 (397)
T ss_pred ecccCccCccccccccccceeeeeeecccchhhhhcc-CccceEEeecccC
Confidence 443211111111 122357999999998766655 4568999987543
No 392
>KOG0918 consensus Selenium-binding protein [Inorganic ion transport and metabolism]
Probab=58.19 E-value=28 Score=32.34 Aligned_cols=31 Identities=16% Similarity=0.288 Sum_probs=26.4
Q ss_pred ceEEEccCCCEEEEEecCCCEEEEEEcCCCC
Q 018242 204 NGVALSEDGNYILLAETTSCRILRYWLKTSK 234 (359)
Q Consensus 204 ~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~ 234 (359)
..|-++-|.+.||++...-+-|++||+.++.
T Consensus 315 TDilISmDDRFLYvs~WLHGDirQYdIsDP~ 345 (476)
T KOG0918|consen 315 TDILISLDDRFLYVSNWLHGDIRQYDISDPK 345 (476)
T ss_pred heeEEeecCcEEEEEeeeecceeeeccCCCC
Confidence 4677888999999999999999999997653
No 393
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=57.34 E-value=1.6e+02 Score=27.06 Aligned_cols=166 Identities=11% Similarity=0.110 Sum_probs=83.2
Q ss_pred CCceEEEccCCCeeEEecCCCEEEEEEcCC--cceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEE
Q 018242 35 GPESLAFDALGEGPYTGVSDGRIIKWHQDQ--RRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYI 112 (359)
Q Consensus 35 ~p~~i~~~~~G~~l~~~~~~~~i~~~d~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v 112 (359)
.-.+|.+.+|+. -|.+..+=+|..|++.- ..|--...-|++ ++........--|+|..-++|+
T Consensus 166 hiNSIS~NsD~E-t~lSADdLRINLWnlei~d~sFnIVDIKP~n--------------mEeLteVITsaEFhp~~cn~f~ 230 (433)
T KOG1354|consen 166 HINSISVNSDKE-TFLSADDLRINLWNLEIIDQSFNIVDIKPAN--------------MEELTEVITSAEFHPHHCNVFV 230 (433)
T ss_pred EeeeeeecCccc-eEeeccceeeeeccccccCCceeEEEccccC--------------HHHHHHHHhhhccCHhHccEEE
Confidence 334788889998 77777778999998753 223333222211 1111111122235554555666
Q ss_pred EeCCCc-EEEEeCCCCeE-----EEEeecCC-------CccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCC
Q 018242 113 ADAYFG-LLKVGPEGGLA-----TAVATQSE-------GIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDK 179 (359)
Q Consensus 113 ~~~~~~-i~~~~~~~~~~-----~~~~~~~~-------~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~ 179 (359)
.....| |...|+....+ +.+..+.. ..-+..+.++.+++.|| ..++ .. | .
T Consensus 231 YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGr-yils-RD--y-------------l 293 (433)
T KOG1354|consen 231 YSSSKGTIRLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGR-YILS-RD--Y-------------L 293 (433)
T ss_pred EecCCCcEEEeechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCc-EEEE-ec--c-------------c
Confidence 544433 55555542211 11111111 11235788999999999 4444 11 1 1
Q ss_pred CceEEEEeCCCCcEEEEe--CCC--------C-----CCceEEEccCCCEEEEEecCCCEEEEEEcCCC
Q 018242 180 TGRLMKYDPATKQVTVLL--GNL--------S-----FPNGVALSEDGNYILLAETTSCRILRYWLKTS 233 (359)
Q Consensus 180 ~g~v~~~d~~~~~~~~~~--~~~--------~-----~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~ 233 (359)
+-+||-.+.+.+-++++. ..+ . .-.-++++.++. ...+++.++-...|+.+.+
T Consensus 294 tvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~~-~v~TGsy~n~frvf~~~~g 361 (433)
T KOG1354|consen 294 TVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSGNDS-YVMTGSYNNVFRVFNLARG 361 (433)
T ss_pred eeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcCCcc-eEecccccceEEEecCCCC
Confidence 234555555554444432 111 0 112456665554 4566667777777775543
No 394
>COG4447 Uncharacterized protein related to plant photosystem II stability/assembly factor [General function prediction only]
Probab=56.55 E-value=1.3e+02 Score=26.85 Aligned_cols=42 Identities=14% Similarity=0.232 Sum_probs=28.8
Q ss_pred EEEeeCCCCCCceEEEccCCCeeEEecCCCEEEEEEcCCcce
Q 018242 26 VQYQIEGAIGPESLAFDALGEGPYTGVSDGRIIKWHQDQRRW 67 (359)
Q Consensus 26 ~~~~~~~~~~p~~i~~~~~G~~l~~~~~~~~i~~~d~~~~~~ 67 (359)
..+.++....--++++-.+|+..|.--..+.|..-|..+..|
T Consensus 35 ~~velp~~s~~l~ia~~~~g~~gwlVg~rgtiletdd~g~tw 76 (339)
T COG4447 35 TDVELPTLSPTLDIAFTESGSHGWLVGGRGTILETDDGGITW 76 (339)
T ss_pred eeeeccccCcccceeEeecCcceEEEcCcceEEEecCCcccc
Confidence 355666656666888888887788766667787766555433
No 395
>TIGR02608 delta_60_rpt delta-60 repeat domain. This domain occurs in tandem repeats, as many as 13, in proteins from Bdellovibrio bacteriovorus, Azotobacter vinelandii, Geobacter sulfurreducens, Pirellula sp. 1, Myxococcus xanthus, and others, many of which are Deltaproteobacteria. The periodicity of the repeat ranges from about 57 to 61 amino acids, and a core region of about 54 is represented by this model and seed alignment.
Probab=56.52 E-value=18 Score=23.30 Aligned_cols=30 Identities=17% Similarity=0.135 Sum_probs=21.3
Q ss_pred CceEEEccCCCeeEEecC-------CCEEEEEEcCCc
Q 018242 36 PESLAFDALGEGPYTGVS-------DGRIIKWHQDQR 65 (359)
Q Consensus 36 p~~i~~~~~G~~l~~~~~-------~~~i~~~d~~~~ 65 (359)
.+++++.|||+++.++.. +..|.|+++++.
T Consensus 3 ~~~~~~q~DGkIlv~G~~~~~~~~~~~~l~Rln~DGs 39 (55)
T TIGR02608 3 AYAVAVQSDGKILVAGYVDNSSGNNDFVLARLNADGS 39 (55)
T ss_pred eEEEEECCCCcEEEEEEeecCCCcccEEEEEECCCCC
Confidence 467899999997776643 234778887764
No 396
>PF11466 Doppel: Prion-like protein Doppel; InterPro: IPR021566 Dpl is a homologue related to the prion protein (PrP). Dpl is toxic to neurons and is expressed in the brains of mice that do not express PrP. In DHPC and SDS micelles, Dpl shoes about 40% alpha-helical structure however in aqueous solution it consists of a random coil. The alpha helical segment can adopt a transmembrane localisation also in a membrane. The unprocessed Dpl protein is thought to posses a possible channel formation mechanism which may be related to toxicity through direct interaction with cell membranes and damage to the cell membrane. ; PDB: 1Z65_A.
Probab=56.42 E-value=11 Score=20.55 Aligned_cols=19 Identities=26% Similarity=0.205 Sum_probs=13.4
Q ss_pred CCCchhHHHHHHHHHHHhh
Q 018242 1 MNSSLSFIAKSIVIFLFIN 19 (359)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~ 19 (359)
|++.+...-+.++|+++++
T Consensus 1 Mrk~Lg~~~lAi~c~LL~s 19 (30)
T PF11466_consen 1 MRKHLGGWWLAIVCVLLFS 19 (30)
T ss_dssp --SS-SSHHHHHHHHHHHH
T ss_pred CccchhhHHHHHHHHHHHH
Confidence 7788888888888888886
No 397
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=55.07 E-value=1.2e+02 Score=30.05 Aligned_cols=64 Identities=17% Similarity=0.190 Sum_probs=48.2
Q ss_pred CCCCCCceEEEccCCCEEEEEecCCCEEEEEEcCCCCCcceeEee-cCCCCCCceEECCCCCEEE
Q 018242 198 GNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVA-QLPGFPDNIKRSPRGGFWV 261 (359)
Q Consensus 198 ~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~-~~~~~p~~i~~d~~G~lwv 261 (359)
.+...|.-|||++..+.+-|+....+-|.+|.+........+.+. +....|.||+|=.|+.+.+
T Consensus 336 PGILvPDliAfn~kaq~VAVASNTcn~ilVYSv~~s~mPniQqIqLe~~ERPKGiCFltdklLLi 400 (671)
T PF15390_consen 336 PGILVPDLIAFNPKAQVVAVASNTCNIILVYSVTPSSMPNIQQIQLESNERPKGICFLTDKLLLI 400 (671)
T ss_pred ccccccceeeeCCcCCEEEEEecCCcEEEEEEeccccCCCeeEEEcccCCCCceeeEccCCeEEE
Confidence 556779999999999989999888899999998765444444433 3456799999976765444
No 398
>smart00284 OLF Olfactomedin-like domains.
Probab=54.23 E-value=1.5e+02 Score=25.97 Aligned_cols=109 Identities=15% Similarity=0.176 Sum_probs=57.0
Q ss_pred CCeEEEEeCC-CcEEEEeCCCCeEEEEeec-CCC----cc----ccccceEEEeCCCCEEEEEeCCCccccccceeeeee
Q 018242 107 NGDLYIADAY-FGLLKVGPEGGLATAVATQ-SEG----IP----FRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILS 176 (359)
Q Consensus 107 ~g~l~v~~~~-~~i~~~~~~~~~~~~~~~~-~~~----~~----~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~ 176 (359)
+|.||.--.. ..|+|+|..++.+...... ..+ .+ ...--++++|.+| ||+-=+. ..
T Consensus 83 ngslYY~~~~s~~iiKydL~t~~v~~~~~Lp~a~y~~~~~Y~~~~~sdiDlAvDE~G--LWvIYat-----~~------- 148 (255)
T smart00284 83 NGSLYFNKFNSHDICRFDLTTETYQKEPLLNGAGYNNRFPYAWGGFSDIDLAVDENG--LWVIYAT-----EQ------- 148 (255)
T ss_pred CceEEEEecCCccEEEEECCCCcEEEEEecCccccccccccccCCCccEEEEEcCCc--eEEEEec-----cC-------
Confidence 6778874322 3699999998877422211 100 00 1122368899888 8887211 00
Q ss_pred cCCCceEEEEeCCCCcEEEEeC-CCCC---CceEEEccCCCEEEEEecC---CCE-EEEEEcCC
Q 018242 177 GDKTGRLMKYDPATKQVTVLLG-NLSF---PNGVALSEDGNYILLAETT---SCR-ILRYWLKT 232 (359)
Q Consensus 177 ~~~~g~v~~~d~~~~~~~~~~~-~~~~---p~gia~~~d~~~l~v~~~~---~~~-i~~~~~~~ 232 (359)
....-.|-++||++-+++.... .... .+..-++ | .||++.+. +.+ -+.||...
T Consensus 149 ~~g~ivvSkLnp~tL~ve~tW~T~~~k~sa~naFmvC--G-vLY~~~s~~~~~~~I~yayDt~t 209 (255)
T smart00284 149 NAGKIVISKLNPATLTIENTWITTYNKRSASNAFMIC--G-ILYVTRSLGSKGEKVFYAYDTNT 209 (255)
T ss_pred CCCCEEEEeeCcccceEEEEEEcCCCcccccccEEEe--e-EEEEEccCCCCCcEEEEEEECCC
Confidence 0111235589998877765432 2221 2333333 3 48888752 222 45566554
No 399
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=53.01 E-value=1.7e+02 Score=26.17 Aligned_cols=159 Identities=13% Similarity=0.132 Sum_probs=80.5
Q ss_pred CCceEEEccCCCeeEEecCCCEEEEEEcCCcce-EEEeecCCCCCCCCCCcccccccccccCCcceEEEEec-CCCeEEE
Q 018242 35 GPESLAFDALGEGPYTGVSDGRIIKWHQDQRRW-LHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNK-TNGDLYI 112 (359)
Q Consensus 35 ~p~~i~~~~~G~~l~~~~~~~~i~~~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~-~~g~l~v 112 (359)
.-.++.+.|++. -.++..+..|..|+.+...- ......+ ...+ +...+ .+=+.+| -+++.+.
T Consensus 125 ~i~cvew~Pns~-klasm~dn~i~l~~l~ess~~vaev~ss-------~s~e-~~~~f-------tsg~WspHHdgnqv~ 188 (370)
T KOG1007|consen 125 KINCVEWEPNSD-KLASMDDNNIVLWSLDESSKIVAEVLSS-------ESAE-MRHSF-------TSGAWSPHHDGNQVA 188 (370)
T ss_pred ceeeEEEcCCCC-eeEEeccCceEEEEcccCcchheeeccc-------cccc-cccee-------cccccCCCCccceEE
Confidence 446888999887 44445567899998875421 1100000 0000 00011 1112232 2667666
Q ss_pred EeCCCcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCCc
Q 018242 113 ADAYFGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQ 192 (359)
Q Consensus 113 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~ 192 (359)
+.....+..+|..+-... ..+.........++.+.|+-.++.++ .+..|.|..+|...-+
T Consensus 189 tt~d~tl~~~D~RT~~~~---~sI~dAHgq~vrdlDfNpnkq~~lvt-----------------~gDdgyvriWD~R~tk 248 (370)
T KOG1007|consen 189 TTSDSTLQFWDLRTMKKN---NSIEDAHGQRVRDLDFNPNKQHILVT-----------------CGDDGYVRIWDTRKTK 248 (370)
T ss_pred EeCCCcEEEEEccchhhh---cchhhhhcceeeeccCCCCceEEEEE-----------------cCCCccEEEEeccCCC
Confidence 655556777877643211 11122122345567777887745555 2335678888865322
Q ss_pred EEE--EeCCCCCCceEEEccCCCEEEEEecCCCEEEEEE
Q 018242 193 VTV--LLGNLSFPNGVALSEDGNYILLAETTSCRILRYW 229 (359)
Q Consensus 193 ~~~--~~~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~ 229 (359)
... +.++......+.|.|....|+.+...+..+...-
T Consensus 249 ~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsc 287 (370)
T KOG1007|consen 249 FPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSC 287 (370)
T ss_pred ccccccCCCceEEEEEEecCccceEEEecCCCceeEEEe
Confidence 211 1122223446666665555777776666665544
No 400
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=52.00 E-value=2.2e+02 Score=27.26 Aligned_cols=149 Identities=13% Similarity=0.015 Sum_probs=70.6
Q ss_pred CCCCceEEEccCCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEE
Q 018242 33 AIGPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYI 112 (359)
Q Consensus 33 ~~~p~~i~~~~~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v 112 (359)
+....++.+|..++.+++... |+..-|-.++- +.+. |. ..... ..+....|.|++ |+.+..
T Consensus 22 ipesngvFfDDaNkqlfavrS-ggatgvvvkgp----------ndDV---pi---Sfdm~-d~G~I~SIkFSl-DnkilA 82 (657)
T KOG2377|consen 22 IPESNGVFFDDANKQLFAVRS-GGATGVVVKGP----------NDDV---PI---SFDMD-DKGEIKSIKFSL-DNKILA 82 (657)
T ss_pred CCcccceeeccCcceEEEEec-CCeeEEEEeCC----------CCCC---Cc---eeeec-CCCceeEEEecc-CcceEE
Confidence 335558999988886665555 34443332211 0000 00 00111 123456788999 555554
Q ss_pred EeC-CCcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCC
Q 018242 113 ADA-YFGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATK 191 (359)
Q Consensus 113 ~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~ 191 (359)
... ...|..++.-+.+...............+.+..+...-...+|++++ -.+|.+++.-+
T Consensus 83 VQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s~e~A~i~~~G------------------~e~y~v~pekr 144 (657)
T KOG2377|consen 83 VQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSSTEIAFITDQG------------------IEFYQVLPEKR 144 (657)
T ss_pred EEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecCeeEEEEecCC------------------eEEEEEchhhh
Confidence 433 33455555433221111111111122345666666554434444332 24777777755
Q ss_pred cEEEEeCCCCCCceEEEccCCCEEEEE
Q 018242 192 QVTVLLGNLSFPNGVALSEDGNYILLA 218 (359)
Q Consensus 192 ~~~~~~~~~~~p~gia~~~d~~~l~v~ 218 (359)
.++.+.......+=.+++++-+..+.+
T Consensus 145 slRlVks~~~nvnWy~yc~et~v~LL~ 171 (657)
T KOG2377|consen 145 SLRLVKSHNLNVNWYMYCPETAVILLS 171 (657)
T ss_pred hhhhhhhcccCccEEEEccccceEeee
Confidence 555554444445555667776644443
No 401
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=51.42 E-value=3.2e+02 Score=28.83 Aligned_cols=134 Identities=12% Similarity=0.073 Sum_probs=66.1
Q ss_pred CCeEEEEeCCCcEEEEeCCCCeEEEEeecCCC-ccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEE
Q 018242 107 NGDLYIADAYFGLLKVGPEGGLATAVATQSEG-IPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMK 185 (359)
Q Consensus 107 ~g~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~ 185 (359)
+.++++.+..+-+...+.+.+.+-. ..... .....+.-+..+.... +|+. .++-.+.|+.
T Consensus 99 ~k~i~l~~~~ns~~i~d~~~~~~~~--~i~~~er~~l~~~~~~g~s~~~-~~i~----------------~gsv~~~iiv 159 (967)
T KOG0974|consen 99 NKKIALVTSRNSLLIRDSKNSSVLS--KIQSDERCTLYSSLIIGDSAEE-LYIA----------------SGSVFGEIIV 159 (967)
T ss_pred cceEEEEEcCceEEEEecccCceeh--hcCCCceEEEEeEEEEeccCcE-EEEE----------------eccccccEEE
Confidence 5566666666666666665443211 10010 0111222334444444 7777 2233467777
Q ss_pred EeCCCCcEEE-EeCCCCCCceEEEccCCCEEEEEecCCCEEEEEEcCCCCCcceeEeecCCCCCCceEECCCCCEEEE
Q 018242 186 YDPATKQVTV-LLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGGFWVG 262 (359)
Q Consensus 186 ~d~~~~~~~~-~~~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lwv~ 262 (359)
+.+....... +..+-..+..+.++.||+ ..++-+++..+..|++++........| ..++.+.+.++++. .+..+
T Consensus 160 W~~~~dn~p~~l~GHeG~iF~i~~s~dg~-~i~s~SdDRsiRlW~i~s~~~~~~~~f-gHsaRvw~~~~~~n-~i~t~ 234 (967)
T KOG0974|consen 160 WKPHEDNKPIRLKGHEGSIFSIVTSLDGR-YIASVSDDRSIRLWPIDSREVLGCTGF-GHSARVWACCFLPN-RIITV 234 (967)
T ss_pred EeccccCCcceecccCCceEEEEEccCCc-EEEEEecCcceeeeecccccccCcccc-cccceeEEEEeccc-eeEEe
Confidence 7765222211 223333456677777887 455556777888888765432211111 12344666777665 44433
No 402
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=50.64 E-value=46 Score=33.22 Aligned_cols=87 Identities=17% Similarity=0.215 Sum_probs=50.7
Q ss_pred CceEEEEeCCCCcEEEEeCCCC--CCceEEEccCCCEEEEEecCCCEEEEEEcCCCCCcceeEeec--C--CCCCCceEE
Q 018242 180 TGRLMKYDPATKQVTVLLGNLS--FPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQ--L--PGFPDNIKR 253 (359)
Q Consensus 180 ~g~v~~~d~~~~~~~~~~~~~~--~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~--~--~~~p~~i~~ 253 (359)
.|.||.|+..++..+.+..... ..-.+.++++. .+.++.+.+++|.+|.+.....+....+.. . +.....+++
T Consensus 54 ~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e-~lvAagt~~g~V~v~ql~~~~p~~~~~~t~~d~~~~~rVTal~W 132 (726)
T KOG3621|consen 54 AGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVE-YLVAAGTASGRVSVFQLNKELPRDLDYVTPCDKSHKCRVTALEW 132 (726)
T ss_pred cceEEEEecCchhhhcccccCccceEEEEEecchh-HhhhhhcCCceEEeehhhccCCCcceeeccccccCCceEEEEEe
Confidence 4678888888766554433221 12234555554 478888888899888775432222222222 1 122344788
Q ss_pred CCCC-CEEEEEecCC
Q 018242 254 SPRG-GFWVGIHSRR 267 (359)
Q Consensus 254 d~~G-~lwv~~~~~~ 267 (359)
+++| ++|.|...+.
T Consensus 133 s~~~~k~ysGD~~Gk 147 (726)
T KOG3621|consen 133 SKNGMKLYSGDSQGK 147 (726)
T ss_pred cccccEEeecCCCce
Confidence 8888 4888876544
No 403
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=50.09 E-value=1.9e+02 Score=25.92 Aligned_cols=89 Identities=12% Similarity=0.128 Sum_probs=56.4
Q ss_pred CCCceEEEEeCCCCcEEEEe-CCCCCCceEEEccCCCEEEEEecCCCEEEEEEcCCCCCcceeEe-----------e-c-
Q 018242 178 DKTGRLMKYDPATKQVTVLL-GNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIV-----------A-Q- 243 (359)
Q Consensus 178 ~~~g~v~~~d~~~~~~~~~~-~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~-----------~-~- 243 (359)
.....|-..|..+|.+.... ++-...-.+.++|...+++.+.+.++++..||+... .+.+..+ . +
T Consensus 165 tr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRra-sgcf~~lD~hn~k~~p~~~~n~ 243 (397)
T KOG4283|consen 165 TRDVQVRLCDIASGSFSHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRA-SGCFRVLDQHNTKRPPILKTNT 243 (397)
T ss_pred cCCCcEEEEeccCCcceeeeccccCceEEEEeccCceeEEEecCCCceEEEEEeecc-cceeEEeecccCccCccccccc
Confidence 34456888888888776543 333445577888988888889999999999997532 0111111 1 1
Q ss_pred -CCCCCCceEECCCCC-EEEEEecCC
Q 018242 244 -LPGFPDNIKRSPRGG-FWVGIHSRR 267 (359)
Q Consensus 244 -~~~~p~~i~~d~~G~-lwv~~~~~~ 267 (359)
..+-.+++++.++|. +|....+++
T Consensus 244 ah~gkvngla~tSd~~~l~~~gtd~r 269 (397)
T KOG4283|consen 244 AHYGKVNGLAWTSDARYLASCGTDDR 269 (397)
T ss_pred cccceeeeeeecccchhhhhccCccc
Confidence 123356788888884 666555444
No 404
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=49.77 E-value=2.6e+02 Score=27.43 Aligned_cols=62 Identities=19% Similarity=0.228 Sum_probs=40.2
Q ss_pred CCCceEEEccCCCEEEEEecC--CCEEEEEEcCCCCCcceeEeec-CCCCCCceEECCCCCEEEEEec
Q 018242 201 SFPNGVALSEDGNYILLAETT--SCRILRYWLKTSKAGTIEIVAQ-LPGFPDNIKRSPRGGFWVGIHS 265 (359)
Q Consensus 201 ~~p~gia~~~d~~~l~v~~~~--~~~i~~~~~~~~~~~~~~~~~~-~~~~p~~i~~d~~G~lwv~~~~ 265 (359)
...+.+-++|.|+.+.++... .+.+.-||.+-.. .+.... -...-..+.+||.|++.++...
T Consensus 493 ~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~---~k~~~~~eh~~at~veWDPtGRYvvT~ss 557 (698)
T KOG2314|consen 493 KFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYAD---LKDTASPEHFAATEVEWDPTGRYVVTSSS 557 (698)
T ss_pred cccceEEEcCCCcEEEEEEecccccceEEEecchhh---hhhccCccccccccceECCCCCEEEEeee
Confidence 456889999999988877765 5677777764211 111111 1122456899999988886654
No 405
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=49.67 E-value=2.2e+02 Score=26.44 Aligned_cols=17 Identities=6% Similarity=0.460 Sum_probs=13.4
Q ss_pred CEEEEEEcCCcceEEEe
Q 018242 55 GRIIKWHQDQRRWLHFA 71 (359)
Q Consensus 55 ~~i~~~d~~~~~~~~~~ 71 (359)
..+.+||+.+++|+...
T Consensus 189 ~~v~~YD~~t~~W~~~~ 205 (376)
T PRK14131 189 KEVLSYDPSTNQWKNAG 205 (376)
T ss_pred ceEEEEECCCCeeeECC
Confidence 35899999999887653
No 406
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=49.02 E-value=2.1e+02 Score=25.94 Aligned_cols=165 Identities=11% Similarity=0.056 Sum_probs=86.0
Q ss_pred EEEEeeCCCCCCceEEEc----cCCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceE
Q 018242 25 VVQYQIEGAIGPESLAFD----ALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLG 100 (359)
Q Consensus 25 ~~~~~~~~~~~p~~i~~~----~~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g 100 (359)
..|.++-.+.+-.++..- ..|..++++..+..-..||.++++.... +.....+...
T Consensus 260 tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~--------------------LtGHd~ELtH 319 (481)
T KOG0300|consen 260 TIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVETGEVVNI--------------------LTGHDSELTH 319 (481)
T ss_pred eeeeeeeeeeccccceEehhhhcCcceeeeeeccccceeeeeccCceecc--------------------ccCcchhccc
Confidence 345555444444444333 3466677777777778888888754321 1222233455
Q ss_pred EEEecCCCeEEEEeCCCcEE-EEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCC
Q 018242 101 LCFNKTNGDLYIADAYFGLL-KVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDK 179 (359)
Q Consensus 101 i~~~~~~g~l~v~~~~~~i~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~ 179 (359)
+.-.| .++|.++...+.-+ .+|.... ...+ ..+.+ .-..+....+..+.+ +.-+ +.
T Consensus 320 cstHp-tQrLVvTsSrDtTFRLWDFRea-I~sV-~VFQG-HtdtVTS~vF~~dd~-vVSg------------------SD 376 (481)
T KOG0300|consen 320 CSTHP-TQRLVVTSSRDTTFRLWDFREA-IQSV-AVFQG-HTDTVTSVVFNTDDR-VVSG------------------SD 376 (481)
T ss_pred cccCC-cceEEEEeccCceeEeccchhh-ccee-eeecc-cccceeEEEEecCCc-eeec------------------CC
Confidence 66667 78888876554433 3344321 1111 11111 112344556666666 3222 22
Q ss_pred CceEEEEeCCCCcE--EEEeCCCCCCceEEEccCCCEEEEEecCCCEEEEEEcCCCC
Q 018242 180 TGRLMKYDPATKQV--TVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSK 234 (359)
Q Consensus 180 ~g~v~~~d~~~~~~--~~~~~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~ 234 (359)
...|-.||...-+. .++ ......|-++++..+. ++..-.++..|..||+.+..
T Consensus 377 DrTvKvWdLrNMRsplATI-RtdS~~NRvavs~g~~-iIAiPhDNRqvRlfDlnG~R 431 (481)
T KOG0300|consen 377 DRTVKVWDLRNMRSPLATI-RTDSPANRVAVSKGHP-IIAIPHDNRQVRLFDLNGNR 431 (481)
T ss_pred CceEEEeeeccccCcceee-ecCCccceeEeecCCc-eEEeccCCceEEEEecCCCc
Confidence 33566666652111 111 1224457788876554 55556677788889987653
No 407
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=48.48 E-value=54 Score=28.78 Aligned_cols=32 Identities=19% Similarity=0.032 Sum_probs=26.2
Q ss_pred CCCceEEEccCCCeeEEecCCCEEEEEEcCCc
Q 018242 34 IGPESLAFDALGEGPYTGVSDGRIIKWHQDQR 65 (359)
Q Consensus 34 ~~p~~i~~~~~G~~l~~~~~~~~i~~~d~~~~ 65 (359)
.+-.++.+-+|++++.++-.+++|..|+=.+.
T Consensus 252 pGv~gvrIRpD~KIlATAGWD~RiRVyswrtl 283 (323)
T KOG0322|consen 252 PGVSGVRIRPDGKILATAGWDHRIRVYSWRTL 283 (323)
T ss_pred CCccceEEccCCcEEeecccCCcEEEEEeccC
Confidence 35668999999997778888999988876654
No 408
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=48.38 E-value=1.9e+02 Score=25.28 Aligned_cols=99 Identities=15% Similarity=0.060 Sum_probs=57.0
Q ss_pred CCceEEEccCCCeeEEecCCCEEEEEEcCCcce-EEEeecCCCCCCCCCCcccccccccccCCcceEEE-EecCCCeEEE
Q 018242 35 GPESLAFDALGEGPYTGVSDGRIIKWHQDQRRW-LHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLC-FNKTNGDLYI 112 (359)
Q Consensus 35 ~p~~i~~~~~G~~l~~~~~~~~i~~~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~-~~~~~g~l~v 112 (359)
--+++..|--|++|.++..++.|..+....+.- ..+. ++....+....++ ..|+-|++..
T Consensus 13 ~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~------------------~L~Gh~GPVwqv~wahPk~G~iLA 74 (299)
T KOG1332|consen 13 MIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLA------------------ELTGHSGPVWKVAWAHPKFGTILA 74 (299)
T ss_pred hhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeee------------------EecCCCCCeeEEeecccccCcEee
Confidence 344555666688899999998888887654421 2221 2333333334444 3455677777
Q ss_pred EeCCC-cEEEEeCCCCeEEEEeecCCCccccccceEEEeCCC
Q 018242 113 ADAYF-GLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQST 153 (359)
Q Consensus 113 ~~~~~-~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g 153 (359)
+..++ .+..+...+++.+..... ......+|.+++.|.+
T Consensus 75 ScsYDgkVIiWke~~g~w~k~~e~--~~h~~SVNsV~waphe 114 (299)
T KOG1332|consen 75 SCSYDGKVIIWKEENGRWTKAYEH--AAHSASVNSVAWAPHE 114 (299)
T ss_pred EeecCceEEEEecCCCchhhhhhh--hhhcccceeecccccc
Confidence 65554 477788777766543221 1122356777777654
No 409
>PF13970 DUF4221: Domain of unknown function (DUF4221); PDB: 3S9J_A.
Probab=47.83 E-value=2.2e+02 Score=25.92 Aligned_cols=181 Identities=17% Similarity=0.138 Sum_probs=71.5
Q ss_pred EEeeCC--CCCCceEEE-ccCCCeeE--EecCC-CEEEEEEcCCcceE-EEeecCCCCCCCCCCcccccccccccCCcce
Q 018242 27 QYQIEG--AIGPESLAF-DALGEGPY--TGVSD-GRIIKWHQDQRRWL-HFARTSPNRDGCEGAYEYDHAAKEHICGRPL 99 (359)
Q Consensus 27 ~~~~~~--~~~p~~i~~-~~~G~~l~--~~~~~-~~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 99 (359)
+++++. ...+..+.. ..+|+-++ -.... ..|..+|.++.++. .+.... +-....+.+.
T Consensus 33 ~~~~d~~~~~~~~~l~~~~~~~~~yL~f~n~~~~~~i~~~Dl~~~~l~~~i~~ek---------------eGpngi~~~~ 97 (333)
T PF13970_consen 33 TFDLDDETLYLSYYLQSFSSDGKKYLYFLNNYKSHSIDIYDLDSGKLVKKIPFEK---------------EGPNGIGRPF 97 (333)
T ss_dssp EEE--TTS-S--SSEEEEEETTEEEEEEEE-ST--EEEEEETTTTEEEEEEE-BS---------------SSTTB-TT--
T ss_pred EEcCCceeecccccEEEEEcCCcEEEEEEcCCCcceEEEEECCCCceeeeeeeee---------------ECCCCccccc
Confidence 445443 344555542 45554333 33343 68999999887544 332111 0011123344
Q ss_pred EEEEecCCCeEEEEeCCCcEEEEeCCCCeEEEEeecC---CCcccc---ccceEEEeCCCCEEEEEeCCCccccccceee
Q 018242 100 GLCFNKTNGDLYIADAYFGLLKVGPEGGLATAVATQS---EGIPFR---FCNSLDIDQSTGIIYFTDSSSQFQRRNHISV 173 (359)
Q Consensus 100 gi~~~~~~g~l~v~~~~~~i~~~~~~~~~~~~~~~~~---~~~~~~---~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~ 173 (359)
+.....+...++......++..+|.++.....+.-.. ...+.. ..+..+..+++. +|++..- .+...
T Consensus 98 ~~~~~~Dsi~l~~~~~~~~l~~~n~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~----- 170 (333)
T PF13970_consen 98 GFFQNLDSIFLFNSYAFPKLFLFNSQGEVLKKIDLEEEDLEFEPSEFPSFSNSPIFIKDNK-LYFSQPY-HYPFN----- 170 (333)
T ss_dssp -EEESSSTTSEEEEGGGTEEEEE-TT--EEEEEE---TTS-------BTTTTB--EEETTE-EEEE----SSS-------
T ss_pred cceEcCCceEEEecCCcceEEEEcCCCeEEEEEecccCcccccccccccccccceEeCCCe-EEEeeec-ccccc-----
Confidence 5553332223333201356899998876554432111 111111 123555556666 7777431 11100
Q ss_pred eeecCCCceEEEEeCCCCcEEEEeC---CCCCC----------ceEEEc-cCCCEEEEEecCCCEEEEEE
Q 018242 174 ILSGDKTGRLMKYDPATKQVTVLLG---NLSFP----------NGVALS-EDGNYILLAETTSCRILRYW 229 (359)
Q Consensus 174 ~~~~~~~g~v~~~d~~~~~~~~~~~---~~~~p----------~gia~~-~d~~~l~v~~~~~~~i~~~~ 229 (359)
.-.....-.++.+|+++++++.+.- ..... ....+. ..++.++++....+.|++++
T Consensus 171 ~~~~~~~~~~~~~dl~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~s~~~~~~iyv~d 240 (333)
T PF13970_consen 171 GDFIEKIPVLAIIDLNTKKVKWLPLPYPDKYQKYNINWDGGMFPSYSYNYFKGGKIIISFPADSEIYVYD 240 (333)
T ss_dssp GGGGGGSEEEEEEETTT--EEEEEEE--S------SSEEE---EEEEEET-TTTEEEEEETT-SEEEEES
T ss_pred cccccCceEEEEEECCCCeEEEEeCCChHHhhhhccccCcceecceeEEEeeCCEEEEecCCCceEEEEC
Confidence 0000112247789998888775431 11000 012223 25556777777778888865
No 410
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=47.58 E-value=2.5e+02 Score=26.55 Aligned_cols=163 Identities=9% Similarity=0.095 Sum_probs=78.1
Q ss_pred CCceEEEccCCCeeEE-ec----C-------CCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEE
Q 018242 35 GPESLAFDALGEGPYT-GV----S-------DGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLC 102 (359)
Q Consensus 35 ~p~~i~~~~~G~~l~~-~~----~-------~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~ 102 (359)
+.+.++..+.|. +|+ +- . ..-++.+|..+++|+++.... .+...+++ -|.
T Consensus 123 sshq~va~~s~~-l~~fGGEfaSPnq~qF~HYkD~W~fd~~trkweql~~~g----~PS~RSGH-------------RMv 184 (521)
T KOG1230|consen 123 SSHQAVAVPSNI-LWLFGGEFASPNQEQFHHYKDLWLFDLKTRKWEQLEFGG----GPSPRSGH-------------RMV 184 (521)
T ss_pred ccceeEEeccCe-EEEeccccCCcchhhhhhhhheeeeeeccchheeeccCC----CCCCCccc-------------eeE
Confidence 344666677776 554 32 1 146788899998888764221 11111222 222
Q ss_pred EecCCCeEEEEe---------CCCcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceee
Q 018242 103 FNKTNGDLYIAD---------AYFGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISV 173 (359)
Q Consensus 103 ~~~~~g~l~v~~---------~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~ 173 (359)
... ..-+.++. +.+.|+.+|+++-++..+...........-..+.+.|+|. |++=-- |......-+
T Consensus 185 awK-~~lilFGGFhd~nr~y~YyNDvy~FdLdtykW~Klepsga~PtpRSGcq~~vtpqg~-i~vyGG---YsK~~~kK~ 259 (521)
T KOG1230|consen 185 AWK-RQLILFGGFHDSNRDYIYYNDVYAFDLDTYKWSKLEPSGAGPTPRSGCQFSVTPQGG-IVVYGG---YSKQRVKKD 259 (521)
T ss_pred Eee-eeEEEEcceecCCCceEEeeeeEEEeccceeeeeccCCCCCCCCCCcceEEecCCCc-EEEEcc---hhHhhhhhh
Confidence 222 11122211 1246889999988776554321111112334578889998 766411 110000011
Q ss_pred eeecCCCceEEEEeCCCCcE-EE----EeCCC--CCC---ceEEEccCCCEEEEEec
Q 018242 174 ILSGDKTGRLMKYDPATKQV-TV----LLGNL--SFP---NGVALSEDGNYILLAET 220 (359)
Q Consensus 174 ~~~~~~~g~v~~~d~~~~~~-~~----~~~~~--~~p---~gia~~~d~~~l~v~~~ 220 (359)
.-.+....-.+.++++++.- +. +.... +.| .++++.++++.+++.+.
T Consensus 260 ~dKG~~hsDmf~L~p~~~~~dKw~W~kvkp~g~kPspRsgfsv~va~n~kal~FGGV 316 (521)
T KOG1230|consen 260 VDKGTRHSDMFLLKPEDGREDKWVWTKVKPSGVKPSPRSGFSVAVAKNHKALFFGGV 316 (521)
T ss_pred hhcCceeeeeeeecCCcCCCcceeEeeccCCCCCCCCCCceeEEEecCCceEEecce
Confidence 11223334467777765321 11 11111 222 36677777776666543
No 411
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=47.06 E-value=4.1e+02 Score=29.08 Aligned_cols=30 Identities=7% Similarity=0.164 Sum_probs=22.2
Q ss_pred ceEEEccCCCEEEEEecCCCEEEEEEcCCCC
Q 018242 204 NGVALSEDGNYILLAETTSCRILRYWLKTSK 234 (359)
Q Consensus 204 ~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~ 234 (359)
..|+++...+.+|+-. ..+.|..|++.++.
T Consensus 246 ~qi~ID~SR~IlY~ls-ek~~v~~Y~i~~~G 275 (1311)
T KOG1900|consen 246 RQITIDNSRNILYVLS-EKGTVSAYDIGGNG 275 (1311)
T ss_pred eeeEeccccceeeeec-cCceEEEEEccCCC
Confidence 5788887777666664 56789999987644
No 412
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=46.15 E-value=2.8e+02 Score=26.64 Aligned_cols=142 Identities=18% Similarity=0.179 Sum_probs=62.2
Q ss_pred CCCceEEEccCCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEE
Q 018242 34 IGPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIA 113 (359)
Q Consensus 34 ~~p~~i~~~~~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~ 113 (359)
..|..+..+|+|+.+.+ ..+|.-..+.....+-+. .+.....++.+ +++..+-
T Consensus 33 ~~p~~ls~npngr~v~V-~g~geY~iyt~~~~r~k~-------------------------~G~g~~~vw~~-~n~yAv~ 85 (443)
T PF04053_consen 33 IYPQSLSHNPNGRFVLV-CGDGEYEIYTALAWRNKA-------------------------FGSGLSFVWSS-RNRYAVL 85 (443)
T ss_dssp S--SEEEE-TTSSEEEE-EETTEEEEEETTTTEEEE-------------------------EEE-SEEEE-T-SSEEEEE
T ss_pred cCCeeEEECCCCCEEEE-EcCCEEEEEEccCCcccc-------------------------cCceeEEEEec-CccEEEE
Confidence 46999999999995555 555666666633221111 12223456666 6665555
Q ss_pred eCCCcEEEE-eCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCCc
Q 018242 114 DAYFGLLKV-GPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQ 192 (359)
Q Consensus 114 ~~~~~i~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~ 192 (359)
+....|..+ +.+......+.. + ..+.+|.- |. +..... .+.|..||-++++
T Consensus 86 ~~~~~I~I~kn~~~~~~k~i~~-----~-~~~~~If~---G~-LL~~~~------------------~~~i~~yDw~~~~ 137 (443)
T PF04053_consen 86 ESSSTIKIYKNFKNEVVKSIKL-----P-FSVEKIFG---GN-LLGVKS------------------SDFICFYDWETGK 137 (443)
T ss_dssp -TTS-EEEEETTEE-TT----------S-S-EEEEE----SS-SEEEEE------------------TTEEEEE-TTT--
T ss_pred ECCCeEEEEEcCccccceEEcC-----C-cccceEEc---Cc-EEEEEC------------------CCCEEEEEhhHcc
Confidence 544444443 322111111111 1 12233332 66 443311 2258889988765
Q ss_pred EEEEeCCCCCCceEEEccCCCEEEEEecCCCEEEEEEcC
Q 018242 193 VTVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLK 231 (359)
Q Consensus 193 ~~~~~~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~ 231 (359)
+..-.. ......+.++++++.+-+....+-.|..++.+
T Consensus 138 ~i~~i~-v~~vk~V~Ws~~g~~val~t~~~i~il~~~~~ 175 (443)
T PF04053_consen 138 LIRRID-VSAVKYVIWSDDGELVALVTKDSIYILKYNLE 175 (443)
T ss_dssp EEEEES-S-E-EEEEE-TTSSEEEEE-S-SEEEEEE-HH
T ss_pred eeeEEe-cCCCcEEEEECCCCEEEEEeCCeEEEEEecch
Confidence 543322 22247889999988665554444444455543
No 413
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=45.74 E-value=2.2e+02 Score=25.29 Aligned_cols=30 Identities=20% Similarity=0.142 Sum_probs=21.0
Q ss_pred eceEEEEEe-CCEEEEecCCCCeEEEEcCCC
Q 018242 330 RSISEVEEK-DGNLWIGSVNMPYAGLYNYSS 359 (359)
Q Consensus 330 ~~~~~~~~~-~g~l~ig~~~~~~l~~~~~~~ 359 (359)
+.+.-+... +|++.+.-..+..|++-++++
T Consensus 230 d~i~kmSlSPdg~~La~ih~sG~lsLW~iPs 260 (282)
T PF15492_consen 230 DGIFKMSLSPDGSLLACIHFSGSLSLWEIPS 260 (282)
T ss_pred CceEEEEECCCCCEEEEEEcCCeEEEEecCc
Confidence 344444443 778888888888888887764
No 414
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=45.39 E-value=2.4e+02 Score=25.77 Aligned_cols=83 Identities=16% Similarity=0.121 Sum_probs=45.8
Q ss_pred CceEEEEeCCCCcE-EEEeCCCCCCceEEEccC-CCEEEEEecCCCEEEEEEcCCCCCcceeEeecCCCCCCceEECC--
Q 018242 180 TGRLMKYDPATKQV-TVLLGNLSFPNGVALSED-GNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSP-- 255 (359)
Q Consensus 180 ~g~v~~~d~~~~~~-~~~~~~~~~p~gia~~~d-~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~-- 255 (359)
.|.|..||+.++.. +.+.......+++.|..+ +-..+.+.+.++.|..||+.......+..+..-++-| -+++|.
T Consensus 49 ngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~-f~~ld~nc 127 (376)
T KOG1188|consen 49 NGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTP-FICLDLNC 127 (376)
T ss_pred CCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCc-ceEeeccC
Confidence 35688888877543 333333344578887642 3335555667789999998644323333333322212 355555
Q ss_pred CCCEEEEE
Q 018242 256 RGGFWVGI 263 (359)
Q Consensus 256 ~G~lwv~~ 263 (359)
.+++..+.
T Consensus 128 k~~ii~~G 135 (376)
T KOG1188|consen 128 KKNIIACG 135 (376)
T ss_pred cCCeEEec
Confidence 45666544
No 415
>PF08309 LVIVD: LVIVD repeat; InterPro: IPR013211 This repeat is found in bacterial and archaeal cell surface proteins, many of which are hypothetical. The secondary structure corresponding to this repeat is predicted to comprise 4 beta-strands, which may associate to form a beta-propeller. The repeat copy number varies from 2-14. This repeat is sometimes found with the PKD domain IPR000601 from INTERPRO.
Probab=45.13 E-value=68 Score=19.28 Aligned_cols=26 Identities=23% Similarity=0.307 Sum_probs=20.1
Q ss_pred eEEEEecCCCeEEEEeCCCcEEEEeCCC
Q 018242 99 LGLCFNKTNGDLYIADAYFGLLKVGPEG 126 (359)
Q Consensus 99 ~gi~~~~~~g~l~v~~~~~~i~~~~~~~ 126 (359)
.++.+. ++.+|+++...|+..+|...
T Consensus 5 ~~v~v~--g~yaYva~~~~Gl~IvDISn 30 (42)
T PF08309_consen 5 RDVAVS--GNYAYVADGNNGLVIVDISN 30 (42)
T ss_pred EEEEEE--CCEEEEEeCCCCEEEEECCC
Confidence 455555 78999998888999998754
No 416
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=44.28 E-value=42 Score=17.43 Aligned_cols=27 Identities=30% Similarity=0.409 Sum_probs=19.8
Q ss_pred CCceEEEccCCCeeEEecCCCEEEEEE
Q 018242 35 GPESLAFDALGEGPYTGVSDGRIIKWH 61 (359)
Q Consensus 35 ~p~~i~~~~~G~~l~~~~~~~~i~~~d 61 (359)
...++.+.+++..+.++..++.+..|+
T Consensus 14 ~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 14 PVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred ceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 456788888887677777778777664
No 417
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=43.40 E-value=4.5e+02 Score=28.29 Aligned_cols=161 Identities=12% Similarity=0.058 Sum_probs=83.3
Q ss_pred CCCceEEEcc-CCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCc--ceEEEEecC-CCe
Q 018242 34 IGPESLAFDA-LGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGR--PLGLCFNKT-NGD 109 (359)
Q Consensus 34 ~~p~~i~~~~-~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--p~gi~~~~~-~g~ 109 (359)
..+..+.-+- .|+++.++..+|.|..||...... .. ++-........ ..++.+-+. -++
T Consensus 1209 t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~----------ds-------~v~~~R~h~~~~~Iv~~slq~~G~~e 1271 (1387)
T KOG1517|consen 1209 TLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPP----------DS-------LVCVYREHNDVEPIVHLSLQRQGLGE 1271 (1387)
T ss_pred ccceeecccccCCceEEEeecCCceEEeecccCCc----------cc-------cceeecccCCcccceeEEeecCCCcc
Confidence 3455555443 368788999999999999654310 00 00011111111 234444441 245
Q ss_pred EEEEeCCCcEEEEeCCCCeEEEEeecCC-CccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeC
Q 018242 110 LYIADAYFGLLKVGPEGGLATAVATQSE-GIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDP 188 (359)
Q Consensus 110 l~v~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~ 188 (359)
|+-+...+.|..+|+.......+.+... .........+.+++.-. ++.+-+ .+.+..|+.
T Consensus 1272 lvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hap-iiAsGs------------------~q~ikIy~~ 1332 (1387)
T KOG1517|consen 1272 LVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAP-IIASGS------------------AQLIKIYSL 1332 (1387)
T ss_pred eeeeccCCeEEEEecccCcccccceeeeccccCccceeeeeccCCC-eeeecC------------------cceEEEEec
Confidence 6655544558888887632222211111 11112356778887777 766621 135666676
Q ss_pred CCCcEEEEe--CCC-----CCCceEEEccCCCEEEEEecCCCEEEEEEcC
Q 018242 189 ATKQVTVLL--GNL-----SFPNGVALSEDGNYILLAETTSCRILRYWLK 231 (359)
Q Consensus 189 ~~~~~~~~~--~~~-----~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~ 231 (359)
.+..+..+. +.+ ..+.-++|.|-. .+..++..++.|..|...
T Consensus 1333 ~G~~l~~~k~n~~F~~q~~gs~scL~FHP~~-~llAaG~~Ds~V~iYs~~ 1381 (1387)
T KOG1517|consen 1333 SGEQLNIIKYNPGFMGQRIGSVSCLAFHPHR-LLLAAGSADSTVSIYSCE 1381 (1387)
T ss_pred ChhhhcccccCcccccCcCCCcceeeecchh-HhhhhccCCceEEEeecC
Confidence 644333222 111 223567777654 366666777888888643
No 418
>PRK13792 lysozyme inhibitor; Provisional
Probab=40.84 E-value=28 Score=26.79 Aligned_cols=20 Identities=10% Similarity=0.262 Sum_probs=13.3
Q ss_pred CCCchhHHHHHHHHHHHhhhc
Q 018242 1 MNSSLSFIAKSIVIFLFINSS 21 (359)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~ 21 (359)
||+. +++++..|.+++.+|+
T Consensus 1 mk~~-l~~ll~~~~~lLsaCs 20 (127)
T PRK13792 1 MKKA-LWLLLAAVPVVLVACG 20 (127)
T ss_pred ChhH-HHHHHHHHHhheeccc
Confidence 7755 6666666666777766
No 419
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=40.60 E-value=3.6e+02 Score=26.41 Aligned_cols=31 Identities=3% Similarity=-0.145 Sum_probs=14.8
Q ss_pred eEEEccCCCeeEEecCCCEEEEEEcCCcceE
Q 018242 38 SLAFDALGEGPYTGVSDGRIIKWHQDQRRWL 68 (359)
Q Consensus 38 ~i~~~~~G~~l~~~~~~~~i~~~d~~~~~~~ 68 (359)
++.+...-..+|++.....+..+|..+.+.+
T Consensus 19 ~v~w~~~eei~~~~dDh~~~~~~~~~~~s~~ 49 (737)
T KOG1524|consen 19 CVDWSSNEEIYFVSDDHQIFKWSDVSRDSVE 49 (737)
T ss_pred eecccccceEEEeccCceEEEeecccchhhh
Confidence 4444445554555555444444454444333
No 420
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=40.19 E-value=1.2e+02 Score=28.29 Aligned_cols=53 Identities=13% Similarity=0.061 Sum_probs=35.9
Q ss_pred ceEEEEeCCCCcEEEEeCCCCCCceEEEccCCCEEEEEecCCCEEEEEEcCCC
Q 018242 181 GRLMKYDPATKQVTVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTS 233 (359)
Q Consensus 181 g~v~~~d~~~~~~~~~~~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~ 233 (359)
..|-.+|.++..+.........+...+++-|....+.++-.++.|+.||+..+
T Consensus 216 nkiki~dlet~~~vssy~a~~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R~~ 268 (463)
T KOG1645|consen 216 NKIKIMDLETSCVVSSYIAYNQIWSCCWDLDERHVIYAGLQNGMVLVYDMRQP 268 (463)
T ss_pred ceEEEEecccceeeeheeccCCceeeeeccCCcceeEEeccCceEEEEEccCC
Confidence 45666777664433222233667899999877766666678899999998643
No 421
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=40.14 E-value=72 Score=18.19 Aligned_cols=19 Identities=32% Similarity=0.532 Sum_probs=13.0
Q ss_pred ceEEEccCCCEEEEEecCC
Q 018242 204 NGVALSEDGNYILLAETTS 222 (359)
Q Consensus 204 ~gia~~~d~~~l~v~~~~~ 222 (359)
...+++|||+.++.+....
T Consensus 12 ~~p~~SpDGk~i~f~s~~~ 30 (39)
T PF07676_consen 12 GSPAWSPDGKYIYFTSNRN 30 (39)
T ss_dssp EEEEE-TTSSEEEEEEECT
T ss_pred cCEEEecCCCEEEEEecCC
Confidence 4567899999877766554
No 422
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=39.67 E-value=2.9e+02 Score=25.07 Aligned_cols=17 Identities=6% Similarity=0.540 Sum_probs=13.5
Q ss_pred CEEEEEEcCCcceEEEe
Q 018242 55 GRIIKWHQDQRRWLHFA 71 (359)
Q Consensus 55 ~~i~~~d~~~~~~~~~~ 71 (359)
..+.+||+.+++|+...
T Consensus 168 ~~v~~YDp~t~~W~~~~ 184 (346)
T TIGR03547 168 KNVLSYDPSTNQWRNLG 184 (346)
T ss_pred ceEEEEECCCCceeECc
Confidence 46889999998888653
No 423
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=39.67 E-value=1.2e+02 Score=28.39 Aligned_cols=72 Identities=11% Similarity=-0.014 Sum_probs=46.0
Q ss_pred CCceEEEccCCC-eeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCC-CeEEE
Q 018242 35 GPESLAFDALGE-GPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTN-GDLYI 112 (359)
Q Consensus 35 ~p~~i~~~~~G~-~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~-g~l~v 112 (359)
.-.+++++|..+ ++-.+..+..|-..|..+.-... .......++.+++|.++ +.+|.
T Consensus 195 ~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vs---------------------sy~a~~~~wSC~wDlde~h~IYa 253 (463)
T KOG1645|consen 195 FIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVS---------------------SYIAYNQIWSCCWDLDERHVIYA 253 (463)
T ss_pred hhhhhccCccccceeeeeccCceEEEEecccceeee---------------------heeccCCceeeeeccCCcceeEE
Confidence 445788887654 45566666788888887752211 11122456788888644 55777
Q ss_pred EeCCCcEEEEeCCCC
Q 018242 113 ADAYFGLLKVGPEGG 127 (359)
Q Consensus 113 ~~~~~~i~~~~~~~~ 127 (359)
++.++.|+.||....
T Consensus 254 Gl~nG~VlvyD~R~~ 268 (463)
T KOG1645|consen 254 GLQNGMVLVYDMRQP 268 (463)
T ss_pred eccCceEEEEEccCC
Confidence 776667999998643
No 424
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=39.48 E-value=63 Score=31.87 Aligned_cols=41 Identities=22% Similarity=0.216 Sum_probs=33.3
Q ss_pred EEEEeeCCCCCCceEEEccCCCeeEEecCCCEEEEEEcCCc
Q 018242 25 VVQYQIEGAIGPESLAFDALGEGPYTGVSDGRIIKWHQDQR 65 (359)
Q Consensus 25 ~~~~~~~~~~~p~~i~~~~~G~~l~~~~~~~~i~~~d~~~~ 65 (359)
+..++.++.+--.++++.+||+++.++..+|.|...|..++
T Consensus 54 lwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~ 94 (665)
T KOG4640|consen 54 LWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKG 94 (665)
T ss_pred eEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCC
Confidence 44666665555579999999999999999999999998765
No 425
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=39.15 E-value=3.4e+02 Score=26.12 Aligned_cols=29 Identities=17% Similarity=0.233 Sum_probs=22.3
Q ss_pred CceEEEccCCCeeEEecCCCEEEEEEcCCc
Q 018242 36 PESLAFDALGEGPYTGVSDGRIIKWHQDQR 65 (359)
Q Consensus 36 p~~i~~~~~G~~l~~~~~~~~i~~~d~~~~ 65 (359)
-..+..+|||+.+|+-+. ..+..++.+..
T Consensus 223 v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r 251 (733)
T COG4590 223 VSQLLLTPDGKTLYVRTG-SELVVALLDKR 251 (733)
T ss_pred hHhhEECCCCCEEEEecC-CeEEEEeeccc
Confidence 347889999999998777 56777776654
No 426
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=38.95 E-value=5.6e+02 Score=28.08 Aligned_cols=51 Identities=16% Similarity=0.290 Sum_probs=31.1
Q ss_pred CceEEEEeCCCCcEEEEeC-CC--CCCceEEEccCCCEEEEEecCCCEEEEEEcC
Q 018242 180 TGRLMKYDPATKQVTVLLG-NL--SFPNGVALSEDGNYILLAETTSCRILRYWLK 231 (359)
Q Consensus 180 ~g~v~~~d~~~~~~~~~~~-~~--~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~ 231 (359)
.+++..+|+....-.+... .. -....++++|-+++ ++.++..+.+..||+.
T Consensus 1172 ~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi~idp~~~W-lviGts~G~l~lWDLR 1225 (1431)
T KOG1240|consen 1172 LSRIVSWDTRMRHDAWRLKNQLRHGLVTSIVIDPWCNW-LVIGTSRGQLVLWDLR 1225 (1431)
T ss_pred ccceEEecchhhhhHHhhhcCccccceeEEEecCCceE-EEEecCCceEEEEEee
Confidence 3467778775322211111 11 12467899998884 5666777899999974
No 427
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=38.04 E-value=3e+02 Score=24.72 Aligned_cols=111 Identities=16% Similarity=0.243 Sum_probs=58.3
Q ss_pred CcceEEEEecCCCeEEEEeCCCcEEEEeCCCCe-EEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeee
Q 018242 96 GRPLGLCFNKTNGDLYIADAYFGLLKVGPEGGL-ATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVI 174 (359)
Q Consensus 96 ~~p~gi~~~~~~g~l~v~~~~~~i~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~ 174 (359)
+.+..|+.- ++.|.++. ++.|+.++.+..+ +........ + ..+..+... +++++++|.-.
T Consensus 89 g~V~ai~~~--~~~lv~~~-g~~l~v~~l~~~~~l~~~~~~~~--~-~~i~sl~~~--~~~I~vgD~~~----------- 149 (321)
T PF03178_consen 89 GPVTAICSF--NGRLVVAV-GNKLYVYDLDNSKTLLKKAFYDS--P-FYITSLSVF--KNYILVGDAMK----------- 149 (321)
T ss_dssp S-EEEEEEE--TTEEEEEE-TTEEEEEEEETTSSEEEEEEE-B--S-SSEEEEEEE--TTEEEEEESSS-----------
T ss_pred CcceEhhhh--CCEEEEee-cCEEEEEEccCcccchhhheecc--e-EEEEEEecc--ccEEEEEEccc-----------
Confidence 445666554 67777765 5567777666555 544332111 1 133444443 44699997542
Q ss_pred eecCCCceEEEEeCCCCcEEEEeCCCC--CCceEEEccCCCEEEEEecCCCEEEEEEcC
Q 018242 175 LSGDKTGRLMKYDPATKQVTVLLGNLS--FPNGVALSEDGNYILLAETTSCRILRYWLK 231 (359)
Q Consensus 175 ~~~~~~g~v~~~d~~~~~~~~~~~~~~--~p~gia~~~d~~~l~v~~~~~~~i~~~~~~ 231 (359)
.-.+++|+.+..++..+..... ....+.+-.|++.+++++ ..+.|+.+..+
T Consensus 150 -----sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D-~~gnl~~l~~~ 202 (321)
T PF03178_consen 150 -----SVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGD-KDGNLFVLRYN 202 (321)
T ss_dssp -----SEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEE-TTSEEEEEEE-
T ss_pred -----CEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEc-CCCeEEEEEEC
Confidence 2246778876555665543322 233444444555566665 44677776654
No 428
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=37.62 E-value=3.9e+02 Score=25.93 Aligned_cols=98 Identities=14% Similarity=0.124 Sum_probs=53.7
Q ss_pred ceEEEEecCCCeEEEEeCC--CcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeee
Q 018242 98 PLGLCFNKTNGDLYIADAY--FGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVIL 175 (359)
Q Consensus 98 p~gi~~~~~~g~l~v~~~~--~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~ 175 (359)
.+..++.|...+.-|.... ..+..++.+++ +..... ...-|.+.++|.++++.++..+
T Consensus 277 Vhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-l~~~~P------e~~rNT~~fsp~~r~il~agF~------------- 336 (561)
T COG5354 277 VHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-LRFYFP------EQKRNTIFFSPHERYILFAGFD------------- 336 (561)
T ss_pred ceeeeecccCCceeEEecccccceeecccccc-eEEecC------CcccccccccCcccEEEEecCC-------------
Confidence 3455565544444443311 23566666655 333221 1123457888888867666332
Q ss_pred ecCCCceEEEEeCCCCcEEEE-eCCCCCCceEEEccCCCEEEEE
Q 018242 176 SGDKTGRLMKYDPATKQVTVL-LGNLSFPNGVALSEDGNYILLA 218 (359)
Q Consensus 176 ~~~~~g~v~~~d~~~~~~~~~-~~~~~~p~gia~~~d~~~l~v~ 218 (359)
...|.+..+++.+ ++..+ ........-..++||++.+++.
T Consensus 337 --nl~gni~i~~~~~-rf~~~~~~~~~n~s~~~wspd~qF~~~~ 377 (561)
T COG5354 337 --NLQGNIEIFDPAG-RFKVAGAFNGLNTSYCDWSPDGQFYDTD 377 (561)
T ss_pred --ccccceEEeccCC-ceEEEEEeecCCceEeeccCCceEEEec
Confidence 4567888899874 55443 2222334455678999854443
No 429
>PF09826 Beta_propel: Beta propeller domain; InterPro: IPR019198 This entry consists of predicted secreted proteins containing a C-terminal beta-propeller domain distantly related to WD-40 repeats.
Probab=37.06 E-value=4.2e+02 Score=26.09 Aligned_cols=51 Identities=12% Similarity=-0.003 Sum_probs=28.0
Q ss_pred eEEEEECCCCCEEEEEEccCCceeeceEEEEEeCCEEEEecCCC-CeEEEEcCC
Q 018242 306 GMAMRISEQGNVLEILEEIGRKMWRSISEVEEKDGNLWIGSVNM-PYAGLYNYS 358 (359)
Q Consensus 306 ~~~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~g~l~ig~~~~-~~l~~~~~~ 358 (359)
+.+..+|.+-+++-.+.. -.+...+.++...+++.|+-++.. +=+-+++++
T Consensus 304 N~lyVLD~~L~~vG~l~~--la~gE~IysvRF~Gd~~Y~VTFrqvDPLfviDLs 355 (521)
T PF09826_consen 304 NNLYVLDEDLKIVGSLEG--LAPGERIYSVRFMGDRAYLVTFRQVDPLFVIDLS 355 (521)
T ss_pred EEEEEECCCCcEeEEccc--cCCCceEEEEEEeCCeEEEEEEeecCceEEEECC
Confidence 456666655555444332 112245555666677777777665 556666654
No 430
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=36.57 E-value=4.2e+02 Score=25.98 Aligned_cols=73 Identities=14% Similarity=0.038 Sum_probs=40.4
Q ss_pred ceEEEccCCCeeEEecCCCEEEEEEcCCc---ceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEE
Q 018242 37 ESLAFDALGEGPYTGVSDGRIIKWHQDQR---RWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIA 113 (359)
Q Consensus 37 ~~i~~~~~G~~l~~~~~~~~i~~~d~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~ 113 (359)
..+++.+.--.++.++.++.|-.|++... .-..+ .+++.+....+....+++.+....+|-+
T Consensus 298 r~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~---------------epi~tfraH~gPVl~v~v~~n~~~~ysg 362 (577)
T KOG0642|consen 298 RALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDV---------------EPILTFRAHEGPVLCVVVPSNGEHCYSG 362 (577)
T ss_pred hhhhcCCCCCeEEEeccccchhhhhhcccCCccccce---------------eeeEEEecccCceEEEEecCCceEEEee
Confidence 34445554334788888888888887221 00000 1233444444445677777745556666
Q ss_pred eCCCcEEEEeC
Q 018242 114 DAYFGLLKVGP 124 (359)
Q Consensus 114 ~~~~~i~~~~~ 124 (359)
...+.|..++.
T Consensus 363 g~Dg~I~~w~~ 373 (577)
T KOG0642|consen 363 GIDGTIRCWNL 373 (577)
T ss_pred ccCceeeeecc
Confidence 55555777744
No 431
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=33.30 E-value=3.6e+02 Score=24.22 Aligned_cols=116 Identities=9% Similarity=-0.044 Sum_probs=60.7
Q ss_pred cceEEEEecCCCeEEEEeCCCcEEEEeCCCCeE--EEEeecCCCccccccceEEEeC--CCCEEEEEeCCCcccccccee
Q 018242 97 RPLGLCFNKTNGDLYIADAYFGLLKVGPEGGLA--TAVATQSEGIPFRFCNSLDIDQ--STGIIYFTDSSSQFQRRNHIS 172 (359)
Q Consensus 97 ~p~gi~~~~~~g~l~v~~~~~~i~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~d~--~g~~l~v~d~~~~~~~~~~~~ 172 (359)
+...+.+.| ++.-.++-..+.|..++.+.+.. ..+.............+-+++| +|+ .+.+.
T Consensus 125 ~i~cvew~P-ns~klasm~dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgn-qv~tt------------ 190 (370)
T KOG1007|consen 125 KINCVEWEP-NSDKLASMDDNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGN-QVATT------------ 190 (370)
T ss_pred ceeeEEEcC-CCCeeEEeccCceEEEEcccCcchheeecccccccccceecccccCCCCccc-eEEEe------------
Confidence 345677788 55544443355688887765542 1121111100001122234444 555 33331
Q ss_pred eeeecCCCceEEEEeCCCCcEEE-E-eCCCCCCceEEEccCCCEEEEEecCCCEEEEEEcCC
Q 018242 173 VILSGDKTGRLMKYDPATKQVTV-L-LGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKT 232 (359)
Q Consensus 173 ~~~~~~~~g~v~~~d~~~~~~~~-~-~~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~ 232 (359)
..+.+..||..+..... + ..+......+-|.|..+..+++.-+++.|..||...
T Consensus 191 ------~d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~ 246 (370)
T KOG1007|consen 191 ------SDSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRK 246 (370)
T ss_pred ------CCCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccC
Confidence 23457777765432111 1 112233456777788888889988899999999654
No 432
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=32.56 E-value=3.6e+02 Score=24.03 Aligned_cols=83 Identities=14% Similarity=0.177 Sum_probs=0.0
Q ss_pred EEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEEeC-------CCcEEEEeCCCCe
Q 018242 56 RIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIADA-------YFGLLKVGPEGGL 128 (359)
Q Consensus 56 ~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~~~-------~~~i~~~~~~~~~ 128 (359)
.|+.||..+.+|..+. ....+....|.+.. +.+|+++.. ...+..||.++..
T Consensus 17 ~lC~yd~~~~qW~~~g--------------------~~i~G~V~~l~~~~-~~~Llv~G~ft~~~~~~~~la~yd~~~~~ 75 (281)
T PF12768_consen 17 GLCLYDTDNSQWSSPG--------------------NGISGTVTDLQWAS-NNQLLVGGNFTLNGTNSSNLATYDFKNQT 75 (281)
T ss_pred EEEEEECCCCEeecCC--------------------CCceEEEEEEEEec-CCEEEEEEeeEECCCCceeEEEEecCCCe
Q ss_pred EEEEeecC-CCccccccceEEEeCCCCEEEEE
Q 018242 129 ATAVATQS-EGIPFRFCNSLDIDQSTGIIYFT 159 (359)
Q Consensus 129 ~~~~~~~~-~~~~~~~~~~l~~d~~g~~l~v~ 159 (359)
+..+.... ...+.....-.....|+..+|++
T Consensus 76 w~~~~~~~s~~ipgpv~a~~~~~~d~~~~~~a 107 (281)
T PF12768_consen 76 WSSLGGGSSNSIPGPVTALTFISNDGSNFWVA 107 (281)
T ss_pred eeecCCcccccCCCcEEEEEeeccCCceEEEe
No 433
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=30.87 E-value=79 Score=19.12 Aligned_cols=16 Identities=6% Similarity=0.405 Sum_probs=11.4
Q ss_pred CEEEEEEcCCcceEEE
Q 018242 55 GRIIKWHQDQRRWLHF 70 (359)
Q Consensus 55 ~~i~~~d~~~~~~~~~ 70 (359)
+.+++||+.+++|+.+
T Consensus 29 ~d~~~~d~~~~~W~~~ 44 (49)
T PF13418_consen 29 NDLWIFDIETNTWTRL 44 (49)
T ss_dssp --EEEEETTTTEEEE-
T ss_pred CCEEEEECCCCEEEEC
Confidence 4688999999988765
No 434
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=30.14 E-value=5.6e+02 Score=25.46 Aligned_cols=31 Identities=13% Similarity=-0.003 Sum_probs=24.9
Q ss_pred CceEEEccCCCEEEEEecCCCEEEEEEcCCC
Q 018242 203 PNGVALSEDGNYILLAETTSCRILRYWLKTS 233 (359)
Q Consensus 203 p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~ 233 (359)
..+++++|-.=.++++...++.|..||+...
T Consensus 444 v~~vaWSptrpavF~~~d~~G~l~iWDLl~~ 474 (555)
T KOG1587|consen 444 VTDVAWSPTRPAVFATVDGDGNLDIWDLLQD 474 (555)
T ss_pred eeeeEEcCcCceEEEEEcCCCceehhhhhcc
Confidence 4578999876678888888999999998643
No 435
>PF03082 MAGSP: Male accessory gland secretory protein; InterPro: IPR004315 The accessory gland of male insects is a genital tissue that secretes many components of the ejaculatory fluid, some of which affect the female's receptivity to courtship and her rate of oviposition. The protein is expressed exclusively in the male accessory glands of adult Drosophila melanogaster. During copulation it is transferred to the female genital tract where it is rapidly altered [].; GO: 0007618 mating, 0005576 extracellular region
Probab=30.02 E-value=38 Score=28.33 Aligned_cols=22 Identities=27% Similarity=0.301 Sum_probs=19.6
Q ss_pred CCCchhHHHHHHHHHHHhhhcC
Q 018242 1 MNSSLSFIAKSIVIFLFINSST 22 (359)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~ 22 (359)
||+.++|..++++.|.|-+|-+
T Consensus 1 MNQILLCS~iLLllfaVAnC~~ 22 (264)
T PF03082_consen 1 MNQILLCSAILLLLFAVANCDG 22 (264)
T ss_pred CceeeehHHHHHHHHHHhhccc
Confidence 9999999999999999987654
No 436
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=29.15 E-value=3.8e+02 Score=23.20 Aligned_cols=41 Identities=12% Similarity=0.085 Sum_probs=23.2
Q ss_pred CCeEEEEeCCCcEEEEeC-CCCeEEEEeecCCCccccccceEEEeCCCC
Q 018242 107 NGDLYIADAYFGLLKVGP-EGGLATAVATQSEGIPFRFCNSLDIDQSTG 154 (359)
Q Consensus 107 ~g~l~v~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~ 154 (359)
++.|++|+. .||+.++. .....+.+... ..+..+.+-++-+
T Consensus 7 ~~~L~vGt~-~Gl~~~~~~~~~~~~~i~~~------~~I~ql~vl~~~~ 48 (275)
T PF00780_consen 7 GDRLLVGTE-DGLYVYDLSDPSKPTRILKL------SSITQLSVLPELN 48 (275)
T ss_pred CCEEEEEEC-CCEEEEEecCCccceeEeec------ceEEEEEEecccC
Confidence 778999964 57888887 32322222221 1255666666555
No 437
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=28.99 E-value=4.5e+02 Score=24.04 Aligned_cols=107 Identities=14% Similarity=0.235 Sum_probs=65.6
Q ss_pred EecCCCeEEEEeC-CCc-EEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCC
Q 018242 103 FNKTNGDLYIADA-YFG-LLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKT 180 (359)
Q Consensus 103 ~~~~~g~l~v~~~-~~~-i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~ 180 (359)
++..+++-|++.. ..| |..+|+..++..-... + ....+|.|...|+.-.+.++- +.+
T Consensus 99 yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~---g-hG~sINeik~~p~~~qlvls~-----------------SkD 157 (385)
T KOG1034|consen 99 YDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYR---G-HGGSINEIKFHPDRPQLVLSA-----------------SKD 157 (385)
T ss_pred ecCCCCCeeEEeecceeEEEEEecchhhhcccee---c-cCccchhhhcCCCCCcEEEEe-----------------cCC
Confidence 4443456555533 335 6667887766432111 1 123677888887764366663 234
Q ss_pred ceEEEEeCCCCcEEEEeCCCCC----CceEEEccCCCEEEEEecCCCEEEEEEcC
Q 018242 181 GRLMKYDPATKQVTVLLGNLSF----PNGVALSEDGNYILLAETTSCRILRYWLK 231 (359)
Q Consensus 181 g~v~~~d~~~~~~~~~~~~~~~----p~gia~~~d~~~l~v~~~~~~~i~~~~~~ 231 (359)
..|-.++.++.....+.++... .-.+-|+.++. .+++.-.++.|..|+++
T Consensus 158 ~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~gd-~i~ScGmDhslk~W~l~ 211 (385)
T KOG1034|consen 158 HSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLDGD-RIASCGMDHSLKLWRLN 211 (385)
T ss_pred ceEEEEeccCCeEEEEecccccccCcEEEEEEcCCCC-eeeccCCcceEEEEecC
Confidence 4677888887777777666543 33567778887 45555567889999876
No 438
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=28.88 E-value=1.5e+02 Score=18.30 Aligned_cols=28 Identities=11% Similarity=0.211 Sum_probs=23.5
Q ss_pred ceEEEccCCCeeEEecCCCEEEEEEcCC
Q 018242 37 ESLAFDALGEGPYTGVSDGRIIKWHQDQ 64 (359)
Q Consensus 37 ~~i~~~~~G~~l~~~~~~~~i~~~d~~~ 64 (359)
..+.+.|+..++.+++.+|.|..+..+.
T Consensus 15 ~~~~w~P~mdLiA~~t~~g~v~v~Rl~~ 42 (47)
T PF12894_consen 15 SCMSWCPTMDLIALGTEDGEVLVYRLNW 42 (47)
T ss_pred EEEEECCCCCEEEEEECCCeEEEEECCC
Confidence 4788999999888999999998887743
No 439
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=28.84 E-value=3.6e+02 Score=26.55 Aligned_cols=58 Identities=16% Similarity=0.201 Sum_probs=36.6
Q ss_pred cccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCCcEEEEe-CCCCCCceEEEccCCCE
Q 018242 142 RFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQVTVLL-GNLSFPNGVALSEDGNY 214 (359)
Q Consensus 142 ~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~-~~~~~p~gia~~~d~~~ 214 (359)
...|.+.++|.|+++.++... +..|.+..+|.+-..++... ..-...+-+.++|.|++
T Consensus 493 ~~~N~vfwsPkG~fvvva~l~---------------s~~g~l~F~D~~~a~~k~~~~~eh~~at~veWDPtGRY 551 (698)
T KOG2314|consen 493 KFANTVFWSPKGRFVVVAALV---------------SRRGDLEFYDTDYADLKDTASPEHFAATEVEWDPTGRY 551 (698)
T ss_pred cccceEEEcCCCcEEEEEEec---------------ccccceEEEecchhhhhhccCccccccccceECCCCCE
Confidence 578899999999965555322 34567888887632333221 11223467789999974
No 440
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=28.80 E-value=4.6e+02 Score=25.47 Aligned_cols=116 Identities=13% Similarity=0.073 Sum_probs=63.7
Q ss_pred eEEEEecCCCeEEEEeCCCcEEEEeCCCC-eEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccc---eeee
Q 018242 99 LGLCFNKTNGDLYIADAYFGLLKVGPEGG-LATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNH---ISVI 174 (359)
Q Consensus 99 ~gi~~~~~~g~l~v~~~~~~i~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~---~~~~ 174 (359)
...+++| .|..+++....+|..+.-... ++..+ ....+..+-++|+++ ..++ |.++.- ..+.
T Consensus 36 ~~~~~SP-~G~~l~~~~~~~V~~~~g~~~~~l~~~-------~~~~V~~~~fSP~~k-YL~t-----w~~~pi~~pe~e~ 101 (561)
T COG5354 36 AYVSESP-LGTYLFSEHAAGVECWGGPSKAKLVRF-------RHPDVKYLDFSPNEK-YLVT-----WSREPIIEPEIEI 101 (561)
T ss_pred hheeecC-cchheehhhccceEEccccchhheeee-------ecCCceecccCcccc-eeee-----eccCCccChhhcc
Confidence 3566788 777777655667776654332 22222 223556778889998 5555 433221 1111
Q ss_pred eecCCCceEEEEeCCCCcEEEEeCCCCCC----ceEEEccCCCEEEEEecCCCEEEEEEc
Q 018242 175 LSGDKTGRLMKYDPATKQVTVLLGNLSFP----NGVALSEDGNYILLAETTSCRILRYWL 230 (359)
Q Consensus 175 ~~~~~~g~v~~~d~~~~~~~~~~~~~~~p----~gia~~~d~~~l~v~~~~~~~i~~~~~ 230 (359)
..-.....++++|..++.+..-......| .-+.++.|. .|++-..++.++.+++
T Consensus 102 sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D--~y~ARvv~~sl~i~e~ 159 (561)
T COG5354 102 SPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDD--KYVARVVGSSLYIHEI 159 (561)
T ss_pred CCccccCceeEEeccCceeEeeccccCCcccccceeeeeecc--hhhhhhccCeEEEEec
Confidence 11111235888998887665433333333 134566555 4555556678888886
No 441
>PF05131 Pep3_Vps18: Pep3/Vps18/deep orange family; InterPro: IPR007810 This region is found in a number of proteins identified as being involved in Golgi function and vacuolar sorting. The molecular function of this region is unknown. Proteins containing this domain also contain a C-terminal ring finger domain.
Probab=28.74 E-value=3e+02 Score=21.83 Aligned_cols=69 Identities=14% Similarity=0.252 Sum_probs=42.3
Q ss_pred CCceEEEccCCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEEe
Q 018242 35 GPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIAD 114 (359)
Q Consensus 35 ~p~~i~~~~~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~~ 114 (359)
.|.+|+...=- ++-....+|..++.-+++..... .+....+...||+.|+..+.+|+.+
T Consensus 35 ~p~si~lT~~H---~llL~~~~l~~vn~L~~~vV~e~------------------~~~~~~~~~~gl~~D~~~~t~W~ys 93 (147)
T PF05131_consen 35 PPLSIALTEFH---LLLLYSDRLIAVNRLNNKVVFEE------------------SLLETGGKILGLCRDPSSNTFWLYS 93 (147)
T ss_pred CcceEEeecee---eeEEeCCEEEEEEecCCcEEEEE------------------EeccCCcceeeEEEcCCCCeEEEEe
Confidence 37777776422 22222356777776655432211 1223345678999999889999987
Q ss_pred CCCcEEEEeCC
Q 018242 115 AYFGLLKVGPE 125 (359)
Q Consensus 115 ~~~~i~~~~~~ 125 (359)
. ..|+.+..+
T Consensus 94 ~-~~I~ei~i~ 103 (147)
T PF05131_consen 94 S-NSIFEIVIN 103 (147)
T ss_pred C-CeeEEEEcC
Confidence 4 468877664
No 442
>KOG3567 consensus Peptidylglycine alpha-amidating monooxygenase [Posttranslational modification, protein turnover, chaperones]
Probab=28.01 E-value=1.1e+02 Score=29.23 Aligned_cols=23 Identities=26% Similarity=0.296 Sum_probs=19.0
Q ss_pred ccccccceEEEeCCCCEEEEEeCC
Q 018242 139 IPFRFCNSLDIDQSTGIIYFTDSS 162 (359)
Q Consensus 139 ~~~~~~~~l~~d~~g~~l~v~d~~ 162 (359)
..+..|++|.+|.||. .|++|-.
T Consensus 464 ~~fylphgl~~dkdgf-~~~tdva 486 (501)
T KOG3567|consen 464 NLFYLPHGLSIDKDGF-YWVTDVA 486 (501)
T ss_pred CceecCCcceecCCCc-EEeeccc
Confidence 3566789999999999 9999754
No 443
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=27.45 E-value=3.6e+02 Score=26.49 Aligned_cols=119 Identities=11% Similarity=0.066 Sum_probs=59.8
Q ss_pred ccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCCcEEE-Ee---CCCCCCceEEEcc-CCCEEEE
Q 018242 143 FCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQVTV-LL---GNLSFPNGVALSE-DGNYILL 217 (359)
Q Consensus 143 ~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~-~~---~~~~~p~gia~~~-d~~~l~v 217 (359)
.++++.+-.+-+ |++ +..|++..|||=-++... .. ......+-.++-. |...+..
T Consensus 786 ~i~~igfL~~lr--~i~------------------ScD~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliA 845 (1034)
T KOG4190|consen 786 PIHDIGFLADLR--SIA------------------SCDGGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIA 845 (1034)
T ss_pred cccceeeeeccc--eee------------------eccCcceeecccccchhHhhhcCcccCCCceeEecccCcchheee
Confidence 456777777766 333 235578888875333211 11 1112223333332 4443333
Q ss_pred EecCCCEEEEEEcCCCCCcceeEeecCC---CCCCceEECCCCCEEEEEecCCCcccccccc-CCccceeeec
Q 018242 218 AETTSCRILRYWLKTSKAGTIEIVAQLP---GFPDNIKRSPRGGFWVGIHSRRKGISKLVLS-FPWIGNVLIK 286 (359)
Q Consensus 218 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~---~~p~~i~~d~~G~lwv~~~~~~~~~~~~~~~-~~~~g~~~~~ 286 (359)
..+...++..+|.........-.+.+.+ +..+.+++.+.|+...+...++. +.. +.++|+++..
T Consensus 846 gcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~~GN~lAa~LSnGc-----i~~LDaR~G~vINs 913 (1034)
T KOG4190|consen 846 GCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVADKGNKLAAALSNGC-----IAILDARNGKVINS 913 (1034)
T ss_pred eccchhhheeeecccccceeeEEeccCCCCchheeEEEeccCcchhhHHhcCCc-----EEEEecCCCceecc
Confidence 3366667777775432111111111112 23345788888886666666665 444 4568887654
No 444
>TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171. This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown.
Probab=26.79 E-value=3.7e+02 Score=28.30 Aligned_cols=58 Identities=14% Similarity=0.143 Sum_probs=30.3
Q ss_pred eEEEEeCCCCcEEEE-eCCCCCCceEEEccCCCEEEE-EecC----CCEEEEEEcCCCCCccee
Q 018242 182 RLMKYDPATKQVTVL-LGNLSFPNGVALSEDGNYILL-AETT----SCRILRYWLKTSKAGTIE 239 (359)
Q Consensus 182 ~v~~~d~~~~~~~~~-~~~~~~p~gia~~~d~~~l~v-~~~~----~~~i~~~~~~~~~~~~~~ 239 (359)
.|...|-++...+.+ .........-+++|||+.+-. +... ...|++-++.....+..+
T Consensus 330 ~L~~~D~dG~n~~~ve~~~~~~i~sP~~SPDG~~vAY~ts~e~~~g~s~vYv~~L~t~~~~~vk 393 (912)
T TIGR02171 330 NLAYIDYTKGASRAVEIEDTISVYHPDISPDGKKVAFCTGIEGLPGKSSVYVRNLNASGSGLVK 393 (912)
T ss_pred eEEEEecCCCCceEEEecCCCceecCcCCCCCCEEEEEEeecCCCCCceEEEEehhccCCCceE
Confidence 455555554444333 222111223467899987544 3222 346898888765444333
No 445
>PF10880 DUF2673: Protein of unknown function (DUF2673); InterPro: IPR024247 This family of proteins with unknown function appears to be restricted to Rickettsiae spp.
Probab=26.53 E-value=59 Score=20.74 Aligned_cols=22 Identities=18% Similarity=0.069 Sum_probs=15.5
Q ss_pred CCCchhHHHHHHHHHHHhhhcC
Q 018242 1 MNSSLSFIAKSIVIFLFINSST 22 (359)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~ 22 (359)
||..+-++++++....+|+|+-
T Consensus 1 mknllkillilafa~pvfassm 22 (65)
T PF10880_consen 1 MKNLLKILLILAFASPVFASSM 22 (65)
T ss_pred ChhHHHHHHHHHHhhhHhhhcc
Confidence 5555556777777888888663
No 446
>PF13964 Kelch_6: Kelch motif
Probab=25.56 E-value=1.3e+02 Score=18.22 Aligned_cols=17 Identities=6% Similarity=0.495 Sum_probs=14.1
Q ss_pred CEEEEEEcCCcceEEEe
Q 018242 55 GRIIKWHQDQRRWLHFA 71 (359)
Q Consensus 55 ~~i~~~d~~~~~~~~~~ 71 (359)
..+.+||+.+++|+.++
T Consensus 28 ~~v~~yd~~t~~W~~~~ 44 (50)
T PF13964_consen 28 NDVERYDPETNTWEQLP 44 (50)
T ss_pred ccEEEEcCCCCcEEECC
Confidence 57899999999888764
No 447
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=25.19 E-value=3.2e+02 Score=26.84 Aligned_cols=122 Identities=15% Similarity=0.117 Sum_probs=61.3
Q ss_pred CCceEEEccCCCeeEEecCCCEEEEEEcCCcceEE-EeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEE
Q 018242 35 GPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLH-FARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIA 113 (359)
Q Consensus 35 ~p~~i~~~~~G~~l~~~~~~~~i~~~d~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~ 113 (359)
.-+++.+-.+-+ ++..-+++|+.|||--+.... .... | .+..+. .-.++..-+..+.++
T Consensus 786 ~i~~igfL~~lr--~i~ScD~giHlWDPFigr~Laq~~da---------p--------k~~a~~-~ikcl~nv~~~iliA 845 (1034)
T KOG4190|consen 786 PIHDIGFLADLR--SIASCDGGIHLWDPFIGRLLAQMEDA---------P--------KEGAGG-NIKCLENVDRHILIA 845 (1034)
T ss_pred cccceeeeeccc--eeeeccCcceeecccccchhHhhhcC---------c--------ccCCCc-eeEecccCcchheee
Confidence 344666666665 444445789999997652110 1000 0 011011 112222224455554
Q ss_pred e--CCCcEEEEeCCCCeEEEEeecC-CCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCC
Q 018242 114 D--AYFGLLKVGPEGGLATAVATQS-EGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPAT 190 (359)
Q Consensus 114 ~--~~~~i~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~ 190 (359)
. ....+-.+|.....++--.... ...+......+++.+.|+ |.+.. --.|++...|..+
T Consensus 846 gcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~~GN--~lAa~----------------LSnGci~~LDaR~ 907 (1034)
T KOG4190|consen 846 GCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVADKGN--KLAAA----------------LSNGCIAILDARN 907 (1034)
T ss_pred eccchhhheeeecccccceeeEEeccCCCCchheeEEEeccCcc--hhhHH----------------hcCCcEEEEecCC
Confidence 2 2344666777665543211111 122334456788888898 44311 1247899999888
Q ss_pred CcEE
Q 018242 191 KQVT 194 (359)
Q Consensus 191 ~~~~ 194 (359)
|++.
T Consensus 908 G~vI 911 (1034)
T KOG4190|consen 908 GKVI 911 (1034)
T ss_pred Ccee
Confidence 7654
No 448
>PF14779 BBS1: Ciliary BBSome complex subunit 1
Probab=24.68 E-value=2.5e+02 Score=24.72 Aligned_cols=18 Identities=17% Similarity=0.159 Sum_probs=16.0
Q ss_pred eEEecCCCEEEEEEcCCc
Q 018242 48 PYTGVSDGRIIKWHQDQR 65 (359)
Q Consensus 48 l~~~~~~~~i~~~d~~~~ 65 (359)
++++++.+.|+.+|+.+-
T Consensus 198 LViGTE~~~i~iLd~~af 215 (257)
T PF14779_consen 198 LVIGTESGEIYILDPQAF 215 (257)
T ss_pred EEEEecCCeEEEECchhh
Confidence 899999999999998764
No 449
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=24.18 E-value=2e+02 Score=29.13 Aligned_cols=32 Identities=16% Similarity=0.246 Sum_probs=21.8
Q ss_pred ceEEEccCCCeeEEecCCCEEEEEEcCCcceE
Q 018242 37 ESLAFDALGEGPYTGVSDGRIIKWHQDQRRWL 68 (359)
Q Consensus 37 ~~i~~~~~G~~l~~~~~~~~i~~~d~~~~~~~ 68 (359)
..+.+.|+|+.+..+..+..+-.||...+++.
T Consensus 158 ~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~ 189 (825)
T KOG0267|consen 158 DVLRLSPDGRWVASGGEDNTVKIWDLTAGKLS 189 (825)
T ss_pred EEEeecCCCceeeccCCcceeeeecccccccc
Confidence 45678899993334455578889998776443
No 450
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=24.02 E-value=2.8e+02 Score=27.61 Aligned_cols=68 Identities=19% Similarity=0.303 Sum_probs=44.6
Q ss_pred EEeeCCCCCCceEEEccCCCeeEEecCC-CEEEEEEcCCcceEEEeecCCCCCCCCCCccccccccc-ccCCcceEEEEe
Q 018242 27 QYQIEGAIGPESLAFDALGEGPYTGVSD-GRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKE-HICGRPLGLCFN 104 (359)
Q Consensus 27 ~~~~~~~~~p~~i~~~~~G~~l~~~~~~-~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~p~gi~~~ 104 (359)
++.++++--|+=|+|++...++.++.+. +.|..|.......- .+.++. ....+|.||+|-
T Consensus 332 KV~IPGILvPDliAfn~kaq~VAVASNTcn~ilVYSv~~s~mP------------------niQqIqLe~~ERPKGiCFl 393 (671)
T PF15390_consen 332 KVSIPGILVPDLIAFNPKAQVVAVASNTCNIILVYSVTPSSMP------------------NIQQIQLESNERPKGICFL 393 (671)
T ss_pred eeccccccccceeeeCCcCCEEEEEecCCcEEEEEEeccccCC------------------CeeEEEcccCCCCceeeEc
Confidence 8888999999999999999867777665 55666654322100 000111 123568999998
Q ss_pred cCCCeEEEE
Q 018242 105 KTNGDLYIA 113 (359)
Q Consensus 105 ~~~g~l~v~ 113 (359)
. ++.|.+.
T Consensus 394 t-dklLLil 401 (671)
T PF15390_consen 394 T-DKLLLIL 401 (671)
T ss_pred c-CCeEEEE
Confidence 7 6666554
No 451
>KOG2437 consensus Muskelin [Signal transduction mechanisms]
Probab=23.89 E-value=6.2e+02 Score=24.75 Aligned_cols=128 Identities=13% Similarity=0.191 Sum_probs=63.2
Q ss_pred ceEEEEecCCCeEEEEeCCCcE------EEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccce
Q 018242 98 PLGLCFNKTNGDLYIADAYFGL------LKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHI 171 (359)
Q Consensus 98 p~gi~~~~~~g~l~v~~~~~~i------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~ 171 (359)
-+.|++++++..+|+....+|+ ..|..+...+..+............+.+++|-..+.||+--. |-.....
T Consensus 263 GHQMV~~~~~~CiYLYGGWdG~~~l~DFW~Y~v~e~~W~~iN~~t~~PG~RsCHRMVid~S~~KLYLlG~---Y~~sS~r 339 (723)
T KOG2437|consen 263 GHQMVIDVQTECVYLYGGWDGTQDLADFWAYSVKENQWTCINRDTEGPGARSCHRMVIDISRRKLYLLGR---YLDSSVR 339 (723)
T ss_pred cceEEEeCCCcEEEEecCcccchhHHHHHhhcCCcceeEEeecCCCCCcchhhhhhhhhhhHhHHhhhhh---ccccccc
Confidence 3568888877889887655553 334444444543322111222345667777754222554310 1000000
Q ss_pred eeeeecCCCceEEEEeCCCCcEEEEeCCC---CCC-----ceEEEccCCCEEEEEecC--------CCEEEEEEcC
Q 018242 172 SVILSGDKTGRLMKYDPATKQVTVLLGNL---SFP-----NGVALSEDGNYILLAETT--------SCRILRYWLK 231 (359)
Q Consensus 172 ~~~~~~~~~g~v~~~d~~~~~~~~~~~~~---~~p-----~gia~~~d~~~l~v~~~~--------~~~i~~~~~~ 231 (359)
. +-+...-+|++|.+++.......+. -+| .+++.+.+...+||.+-. -++++.|+..
T Consensus 340 ~---~~s~RsDfW~FDi~~~~W~~ls~dt~~dGGP~~vfDHqM~Vd~~k~~iyVfGGr~~~~~e~~f~GLYaf~~~ 412 (723)
T KOG2437|consen 340 N---SKSLRSDFWRFDIDTNTWMLLSEDTAADGGPKLVFDHQMCVDSEKHMIYVFGGRILTCNEPQFSGLYAFNCQ 412 (723)
T ss_pred c---ccccccceEEEecCCceeEEecccccccCCcceeecceeeEecCcceEEEecCeeccCCCccccceEEEecC
Confidence 0 0012235888888766555443221 122 356666665567876522 1457777654
No 452
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=23.70 E-value=5.3e+02 Score=22.99 Aligned_cols=54 Identities=24% Similarity=0.288 Sum_probs=35.5
Q ss_pred CCCceEEEEeCCCCcEEEEeCCCCCCceEEEccCCCEEEEEecCCCEEEEEEcCCC
Q 018242 178 DKTGRLMKYDPATKQVTVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTS 233 (359)
Q Consensus 178 ~~~g~v~~~d~~~~~~~~~~~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~ 233 (359)
..+++++.++.+..+....... ...+.+++++|++++-..+ +..+|.+|.++..
T Consensus 137 dht~k~~~~~~~s~~~~~h~~~-~~~ns~~~snd~~~~~~Vg-ds~~Vf~y~id~~ 190 (344)
T KOG4532|consen 137 DHTGKTMVVSGDSNKFAVHNQN-LTQNSLHYSNDPSWGSSVG-DSRRVFRYAIDDE 190 (344)
T ss_pred CcceeEEEEecCcccceeeccc-cceeeeEEcCCCceEEEec-CCCcceEEEeCCc
Confidence 3456777777655444332222 2368899999999655554 5678999988754
No 453
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=23.58 E-value=4.5e+02 Score=23.37 Aligned_cols=87 Identities=14% Similarity=0.209 Sum_probs=0.0
Q ss_pred cCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEEeCCCc--------EEEEe
Q 018242 52 VSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIADAYFG--------LLKVG 123 (359)
Q Consensus 52 ~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~~~~~~--------i~~~~ 123 (359)
+....|+.+|..|+.|..-... ...+.+.+.+....= ++.+|+-...++ ++.+|
T Consensus 213 ~Yc~~i~~ld~~T~aW~r~p~~----------------~~~P~GRRSHS~fvY--ng~~Y~FGGYng~ln~HfndLy~Fd 274 (392)
T KOG4693|consen 213 QYCDTIMALDLATGAWTRTPEN----------------TMKPGGRRSHSTFVY--NGKMYMFGGYNGTLNVHFNDLYCFD 274 (392)
T ss_pred hhcceeEEEeccccccccCCCC----------------CcCCCcccccceEEE--cceEEEecccchhhhhhhcceeecc
Q ss_pred CCCCeEEEEeecCCCccccccceEEEeCCCCEEEE
Q 018242 124 PEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYF 158 (359)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v 158 (359)
+++..+..+ ......+...-...++-..++ +|+
T Consensus 275 P~t~~W~~I-~~~Gk~P~aRRRqC~~v~g~k-v~L 307 (392)
T KOG4693|consen 275 PKTSMWSVI-SVRGKYPSARRRQCSVVSGGK-VYL 307 (392)
T ss_pred cccchheee-eccCCCCCcccceeEEEECCE-EEE
No 454
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=23.38 E-value=7.2e+02 Score=24.45 Aligned_cols=100 Identities=16% Similarity=0.172 Sum_probs=52.2
Q ss_pred EEEEeCCCcEEEEeCC--CCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEe
Q 018242 110 LYIADAYFGLLKVGPE--GGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYD 187 (359)
Q Consensus 110 l~v~~~~~~i~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d 187 (359)
-.|+-...+|+|+||. +++....... .-...+..+.......|- +-++ +..|-|-.||
T Consensus 530 tlvGlS~~svFrIDPR~~gNKi~v~esK-dY~tKn~Fss~~tTesGy-Ia~a------------------s~kGDirLyD 589 (776)
T COG5167 530 TLVGLSDYSVFRIDPRARGNKIKVVESK-DYKTKNKFSSGMTTESGY-IAAA------------------SRKGDIRLYD 589 (776)
T ss_pred eEEeecccceEEecccccCCceeeeeeh-hccccccccccccccCce-EEEe------------------cCCCceeeeh
Confidence 3455556789999985 3332221111 001112233344445554 5444 3345577777
Q ss_pred CCCCcEEEEeCCC-CCCceEEEccCCCEEEEEecCCCEEEEEEcC
Q 018242 188 PATKQVTVLLGNL-SFPNGVALSEDGNYILLAETTSCRILRYWLK 231 (359)
Q Consensus 188 ~~~~~~~~~~~~~-~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~ 231 (359)
.=+...++..+++ ...-+|..+.+|++++.+. .+.|...++.
T Consensus 590 Rig~rAKtalP~lG~aIk~idvta~Gk~ilaTC--k~yllL~d~~ 632 (776)
T COG5167 590 RIGKRAKTALPGLGDAIKHIDVTANGKHILATC--KNYLLLTDVP 632 (776)
T ss_pred hhcchhhhcCcccccceeeeEeecCCcEEEEee--cceEEEEecc
Confidence 6544444443332 3345777888998766654 4567777753
No 455
>PRK11548 outer membrane biogenesis protein BamE; Provisional
Probab=22.83 E-value=66 Score=24.17 Aligned_cols=23 Identities=22% Similarity=0.225 Sum_probs=16.0
Q ss_pred CCCchhHHHHHHHHHHHhhhcCC
Q 018242 1 MNSSLSFIAKSIVIFLFINSSTQ 23 (359)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~ 23 (359)
|+.+.++++++++++++.+|+..
T Consensus 1 m~~~~~~~~~~~~~~~LsgCs~~ 23 (113)
T PRK11548 1 MRCKTLTAAAAVLLMLTAGCSTL 23 (113)
T ss_pred CcchHHHHHHHHHHHHHcccCCC
Confidence 77777777777776666667643
No 456
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=21.62 E-value=5.7e+02 Score=22.61 Aligned_cols=152 Identities=20% Similarity=0.185 Sum_probs=78.6
Q ss_pred ceEEEccCCCeeEEecC-CCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCe-EEEE-
Q 018242 37 ESLAFDALGEGPYTGVS-DGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGD-LYIA- 113 (359)
Q Consensus 37 ~~i~~~~~G~~l~~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~-l~v~- 113 (359)
.++.+.++++.++.+.. ++.+..|+..+...... +.........+.+.+ ++. +.++
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~v~~~~~~~-~~~~~~~~~ 217 (466)
T COG2319 159 TSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLST--------------------LAGHTDPVSSLAFSP-DGGLLIASG 217 (466)
T ss_pred EEEEECCCCCEEEecCCCCCceEEEEcCCCceEEe--------------------eccCCCceEEEEEcC-CcceEEEEe
Confidence 37899999984555553 78899999876322211 111122356777776 555 4444
Q ss_pred eCCCcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCCc-
Q 018242 114 DAYFGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQ- 192 (359)
Q Consensus 114 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~- 192 (359)
...+.+..++...+..... ...... ...-..+.+++. ++++. ...+.+..++.....
T Consensus 218 ~~d~~i~~wd~~~~~~~~~--~~~~~~--~~~~~~~~~~~~-~~~~~-----------------~~d~~~~~~~~~~~~~ 275 (466)
T COG2319 218 SSDGTIRLWDLSTGKLLRS--TLSGHS--DSVVSSFSPDGS-LLASG-----------------SSDGTIRLWDLRSSSS 275 (466)
T ss_pred cCCCcEEEEECCCCcEEee--ecCCCC--cceeEeECCCCC-EEEEe-----------------cCCCcEEEeeecCCCc
Confidence 2233455566654443221 111101 111116778876 44431 223456666654333
Q ss_pred -EEEEeCCCCCCceEEEccCCCEEEEEecCCCEEEEEEcCC
Q 018242 193 -VTVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKT 232 (359)
Q Consensus 193 -~~~~~~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~ 232 (359)
......+......+++.|++..+.. ...++.+..|+...
T Consensus 276 ~~~~~~~~~~~v~~~~~~~~~~~~~~-~~~d~~~~~~~~~~ 315 (466)
T COG2319 276 LLRTLSGHSSSVLSVAFSPDGKLLAS-GSSDGTVRLWDLET 315 (466)
T ss_pred EEEEEecCCccEEEEEECCCCCEEEE-eeCCCcEEEEEcCC
Confidence 2222122334567788887776666 44446677776543
No 457
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=21.23 E-value=2.8e+02 Score=27.13 Aligned_cols=66 Identities=18% Similarity=0.108 Sum_probs=41.7
Q ss_pred ceEEEccCCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEEeCC
Q 018242 37 ESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIADAY 116 (359)
Q Consensus 37 ~~i~~~~~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~~~~ 116 (359)
.|++-..+|. +.++...|.|..||......++ .+...+....++.+.. +|...+++-.
T Consensus 434 sc~aTT~sG~-IvvgS~~GdIRLYdri~~~AKT--------------------AlPgLG~~I~hVdvta-dGKwil~Tc~ 491 (644)
T KOG2395|consen 434 SCFATTESGY-IVVGSLKGDIRLYDRIGRRAKT--------------------ALPGLGDAIKHVDVTA-DGKWILATCK 491 (644)
T ss_pred ceeeecCCce-EEEeecCCcEEeehhhhhhhhh--------------------cccccCCceeeEEeec-cCcEEEEecc
Confidence 3666667787 7888888888888874331111 1222223346788888 7887777766
Q ss_pred CcEEEEeC
Q 018242 117 FGLLKVGP 124 (359)
Q Consensus 117 ~~i~~~~~ 124 (359)
.-|+.++.
T Consensus 492 tyLlLi~t 499 (644)
T KOG2395|consen 492 TYLLLIDT 499 (644)
T ss_pred cEEEEEEE
Confidence 66666654
No 458
>COG5510 Predicted small secreted protein [Function unknown]
Probab=21.14 E-value=82 Score=19.08 Aligned_cols=21 Identities=19% Similarity=0.262 Sum_probs=9.9
Q ss_pred CCCchhHHHH-HHHHHHHhhhc
Q 018242 1 MNSSLSFIAK-SIVIFLFINSS 21 (359)
Q Consensus 1 ~~~~~~~~~~-~~~~~~~~~~~ 21 (359)
||+..+.+++ +++++++-+|.
T Consensus 2 mk~t~l~i~~vll~s~llaaCN 23 (44)
T COG5510 2 MKKTILLIALVLLASTLLAACN 23 (44)
T ss_pred chHHHHHHHHHHHHHHHHHHhh
Confidence 4443344444 44445554565
No 459
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []. Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding
Probab=20.79 E-value=5.7e+02 Score=22.31 Aligned_cols=87 Identities=17% Similarity=0.176 Sum_probs=42.0
Q ss_pred CceEEEEeCCCCcEE-EE-eCC--CC--CC------ceEEEccCCCEEEEEecC---CCEEEEEEcCCCCCcceeEeec-
Q 018242 180 TGRLMKYDPATKQVT-VL-LGN--LS--FP------NGVALSEDGNYILLAETT---SCRILRYWLKTSKAGTIEIVAQ- 243 (359)
Q Consensus 180 ~g~v~~~d~~~~~~~-~~-~~~--~~--~p------~gia~~~d~~~l~v~~~~---~~~i~~~~~~~~~~~~~~~~~~- 243 (359)
...|.++|..++.+. .. .++ .. .| +.+-|..|.+.||+.-.. .+.|.+-.++...+.-.+.+..
T Consensus 88 s~~IvkydL~t~~v~~~~~L~~A~~~n~~~y~~~~~t~iD~AvDE~GLWvIYat~~~~g~ivvskld~~tL~v~~tw~T~ 167 (250)
T PF02191_consen 88 SRNIVKYDLTTRSVVARRELPGAGYNNRFPYYWSGYTDIDFAVDENGLWVIYATEDNNGNIVVSKLDPETLSVEQTWNTS 167 (250)
T ss_pred CceEEEEECcCCcEEEEEECCccccccccceecCCCceEEEEEcCCCEEEEEecCCCCCcEEEEeeCcccCceEEEEEec
Confidence 457999999987766 32 111 11 11 234444444446665333 3346555555444433344433
Q ss_pred CCCCCCceEECCCCCEEEEEecC
Q 018242 244 LPGFPDNIKRSPRGGFWVGIHSR 266 (359)
Q Consensus 244 ~~~~p~~i~~d~~G~lwv~~~~~ 266 (359)
.+..--+-+|=--|-||+.....
T Consensus 168 ~~k~~~~naFmvCGvLY~~~s~~ 190 (250)
T PF02191_consen 168 YPKRSAGNAFMVCGVLYATDSYD 190 (250)
T ss_pred cCchhhcceeeEeeEEEEEEECC
Confidence 22111111222357788876654
No 460
>PF03032 Brevenin: Brevenin/esculentin/gaegurin/rugosin family; InterPro: IPR004275 In addition to the highly specific cell-mediated immune system, vertebrates possess an efficient host-defence mechanism against invading microorganisms which involves the synthesis of highly potent antimicrobial peptides with a large spectrum of activity. This entry represents a number of these defence peptides secreted from the skin of amphibians, including the opiate-like dermorphins and deltorphins, and the antimicrobial dermoseptins and temporins.; GO: 0006952 defense response, 0042742 defense response to bacterium, 0005576 extracellular region
Probab=20.00 E-value=50 Score=20.41 Aligned_cols=11 Identities=18% Similarity=0.150 Sum_probs=6.2
Q ss_pred CCCchhHHHHH
Q 018242 1 MNSSLSFIAKS 11 (359)
Q Consensus 1 ~~~~~~~~~~~ 11 (359)
|||+++.++.+
T Consensus 3 lKKsllLlffl 13 (46)
T PF03032_consen 3 LKKSLLLLFFL 13 (46)
T ss_pred chHHHHHHHHH
Confidence 67776554433
Done!