BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 018247
(359 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9FKW0|RNG1A_ARATH Putative E3 ubiquitin-protein ligase RING1a OS=Arabidopsis thaliana
GN=RING1A PE=1 SV=2
Length = 522
Score = 308 bits (788), Expect = 6e-83, Method: Compositional matrix adjust.
Identities = 181/370 (48%), Positives = 248/370 (67%), Gaps = 16/370 (4%)
Query: 1 MECLHRFCRECIDKAMRLGNNECPACRTHCASRRSLRDDLNYDALIAALYPDIDKYEEEE 60
MECLHRFCRECIDK+MRLGNNECPACR HCASRRSLRDD +DALIAAL+ +ID YEEEE
Sbjct: 150 MECLHRFCRECIDKSMRLGNNECPACRKHCASRRSLRDDPKFDALIAALFTNIDSYEEEE 209
Query: 61 LAFQDEEAARNKQIQASIAQTFQRQTEALGRKRTPKSTSALRRSHGRYRDTPLRGRRNYR 120
LAF ++E ARNKQIQASIAQ QRQ+EAL ++R+ +A+ R R R +
Sbjct: 210 LAFHEDEMARNKQIQASIAQISQRQSEALVKRRSLGKEAAVLMRSPRIASGSRRRRNSRN 269
Query: 121 MTELQGSDENDDANGDA----GKDS-SSADERSTEVRPKRRKRWYGARFSQ--SSSAAAG 173
M + S+ ++D + D G+D SS+DER TEVR K+R++ +R +Q SSS A
Sbjct: 270 MEQQNASEAHEDDDNDDNNNRGRDKDSSSDERGTEVRQKKRRKRSTSRSTQHPSSSGANK 329
Query: 174 TDGGGDENDSEVHRESMGASVGLIGPSERLAWGKGGIRSHTRHG-SVSGSNGKNARNNRL 232
+G +ND+EV+R++ G S GL+ E LAWG+GG RS+TRHG + SG + K+ RN R+
Sbjct: 330 NNGNCADNDTEVYRDTKGISPGLVWNPEILAWGRGGTRSNTRHGNNTSGGSSKSVRNARV 389
Query: 233 SKLVDYLQ-SLEEKDDQLDMHLVLVSLDEQRIPGLQQPYLCCRPTLSVRHLCQYVAHQTA 291
+KLV+YL+ S++ +LD+H+ LVSLD + IP L QPYLCCRPTL V+ L ++VA Q
Sbjct: 390 NKLVEYLRSSVDGSSVELDIHVKLVSLDTKCIPDLPQPYLCCRPTLLVKQLREFVALQIH 449
Query: 292 LQASEIEIYL----VKELHSKINLPSSSNSLMIDPCKDKLQVLNEQETLTGLQTQNLG-- 345
L+ E+E+ + V E + NLP+ + + KD++ L + ETL+ L+ +
Sbjct: 450 LKTEEVELLVTRRRVGEDAAIENLPAVTPASAA-ASKDEMLSLEDNETLSRLKIDFISSH 508
Query: 346 HGFLLLAYQK 355
L++AY+K
Sbjct: 509 EQHLIIAYRK 518
>sp|Q0WX00|RNG1B_ARATH Putative E3 ubiquitin-protein ligase RING1b OS=Arabidopsis thaliana
GN=RING1B PE=1 SV=1
Length = 460
Score = 261 bits (666), Expect = 8e-69, Method: Compositional matrix adjust.
Identities = 168/358 (46%), Positives = 224/358 (62%), Gaps = 21/358 (5%)
Query: 1 MECLHRFCRECIDKAMRLGNNECPACRTHCASRRSLRDDLNYDALIAALYPDIDKYEEEE 60
MECLHRFCRECIDK+MRLGNNECP CR HCASRRSLRDD N+DALIAAL+ +IDK+EEEE
Sbjct: 117 MECLHRFCRECIDKSMRLGNNECPTCRKHCASRRSLRDDPNFDALIAALFKNIDKFEEEE 176
Query: 61 LAFQDEEAARNKQIQASIAQTFQRQTEAL-GRKRTPKSTSALRRSHGRYRDTPLRGRRNY 119
L F+ ++ ARNKQIQASIAQ QRQ++AL RK K T+ L RS R RRN
Sbjct: 177 LNFRQDDEARNKQIQASIAQVSQRQSKALVKRKSVGKGTAILSRSRRSG--GGSRRRRNC 234
Query: 120 RMTELQGSDENDDANGDA-GKDSSSADERSTEVRPKRRKRWYGARFSQSSSAAAGTDGGG 178
R E S+ NDD + + GKDSSS DE R KR A SS+A + G
Sbjct: 235 RNIEQDTSEANDDDDQNKRGKDSSS-DEPCERQRKKR-----SATQPSSSNANNNDNCAG 288
Query: 179 DENDSEVHRESMGASVGLIGPSERLAWGKGGIRSHTRHGSVSGSNGKNARNNRLSKLVDY 238
+ + R+S S L+ SE +AWG+GG RS+TR G+ + + RN RL +LV+Y
Sbjct: 289 NGTEQTHQRDSRVISPVLVWNSELIAWGRGGTRSNTRQGN-NNQGAISKRNARLKRLVEY 347
Query: 239 LQSLEEKDDQLDMHLVLVSLDEQRIPGLQQPYLCCRPTLSVRHLCQYVAHQTALQASEIE 298
L SLE +LD+HL LVSLD + + L +PYLC RPTL V+ L +YVA L+A E+E
Sbjct: 348 LGSLEGNSVELDIHLKLVSLDTEGLLNLHEPYLCFRPTLLVKQLREYVARHLKLKAEEVE 407
Query: 299 IYLVKELHSKINLPSSSNSLMIDPCKDKLQVLNEQETLTGLQTQNL-GHGFLLLAYQK 355
+ + K+ + I +S+ +K+Q L + ET+ L+ + +G++++ Y++
Sbjct: 408 LLVSKDGDTVIGNKTST---------EKMQSLQDDETVAKLKVDCISSNGYMIVVYRR 456
>sp|Q5R9J5|RING2_PONAB E3 ubiquitin-protein ligase RING2 OS=Pongo abelii GN=RNF2 PE=2 SV=1
Length = 336
Score = 82.8 bits (203), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 34/56 (60%), Positives = 41/56 (73%)
Query: 2 ECLHRFCRECIDKAMRLGNNECPACRTHCASRRSLRDDLNYDALIAALYPDIDKYE 57
ECLHRFC +CI A+R GN ECP CR S+RSLR D N+DALI+ +YP D+YE
Sbjct: 66 ECLHRFCADCIITALRSGNKECPTCRKKLVSKRSLRPDPNFDALISKIYPSRDEYE 121
>sp|Q9CQJ4|RING2_MOUSE E3 ubiquitin-protein ligase RING2 OS=Mus musculus GN=Rnf2 PE=1 SV=1
Length = 336
Score = 82.8 bits (203), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 34/56 (60%), Positives = 41/56 (73%)
Query: 2 ECLHRFCRECIDKAMRLGNNECPACRTHCASRRSLRDDLNYDALIAALYPDIDKYE 57
ECLHRFC +CI A+R GN ECP CR S+RSLR D N+DALI+ +YP D+YE
Sbjct: 66 ECLHRFCADCIITALRSGNKECPTCRKKLVSKRSLRPDPNFDALISKIYPSRDEYE 121
>sp|Q99496|RING2_HUMAN E3 ubiquitin-protein ligase RING2 OS=Homo sapiens GN=RNF2 PE=1 SV=1
Length = 336
Score = 82.8 bits (203), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 34/56 (60%), Positives = 41/56 (73%)
Query: 2 ECLHRFCRECIDKAMRLGNNECPACRTHCASRRSLRDDLNYDALIAALYPDIDKYE 57
ECLHRFC +CI A+R GN ECP CR S+RSLR D N+DALI+ +YP D+YE
Sbjct: 66 ECLHRFCADCIITALRSGNKECPTCRKKLVSKRSLRPDPNFDALISKIYPSRDEYE 121
>sp|Q803I4|RING2_DANRE E3 ubiquitin-protein ligase RING2 OS=Danio rerio GN=rnf2 PE=2 SV=1
Length = 336
Score = 82.8 bits (203), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 34/56 (60%), Positives = 41/56 (73%)
Query: 2 ECLHRFCRECIDKAMRLGNNECPACRTHCASRRSLRDDLNYDALIAALYPDIDKYE 57
ECLHRFC +CI A+R GN ECP CR S+RSLR D N+DALI+ +YP D+YE
Sbjct: 66 ECLHRFCADCIITALRSGNKECPTCRKKLVSKRSLRPDPNFDALISKIYPSRDEYE 121
>sp|Q7ZWM8|RNG2B_XENLA E3 ubiquitin-protein ligase RING2-B OS=Xenopus laevis GN=rnf2-b
PE=2 SV=2
Length = 343
Score = 82.4 bits (202), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 38/69 (55%), Positives = 46/69 (66%), Gaps = 4/69 (5%)
Query: 2 ECLHRFCRECIDKAMRLGNNECPACRTHCASRRSLRDDLNYDALIAALYPDIDKYEEEEL 61
ECLHRFC +CI A+R GN ECP CR S+RSLR D N+DALI+ +YP D+YE
Sbjct: 62 ECLHRFCSDCIVTALRSGNKECPTCRKKLVSKRSLRPDPNFDALISKIYPSRDEYE---- 117
Query: 62 AFQDEEAAR 70
A QD A+
Sbjct: 118 AHQDRVLAK 126
>sp|Q66J69|RNG2A_XENLA E3 ubiquitin-protein ligase RING2-A OS=Xenopus laevis GN=rnf2-a
PE=2 SV=1
Length = 344
Score = 82.4 bits (202), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 38/69 (55%), Positives = 46/69 (66%), Gaps = 4/69 (5%)
Query: 2 ECLHRFCRECIDKAMRLGNNECPACRTHCASRRSLRDDLNYDALIAALYPDIDKYEEEEL 61
ECLHRFC +CI A+R GN ECP CR S+RSLR D N+DALI+ +YP D+YE
Sbjct: 63 ECLHRFCSDCIVTALRSGNKECPTCRKKLVSKRSLRPDPNFDALISKIYPSRDEYE---- 118
Query: 62 AFQDEEAAR 70
A QD A+
Sbjct: 119 AHQDRVLAK 127
>sp|Q4KLY4|RING2_RAT E3 ubiquitin-protein ligase RING2 OS=Rattus norvegicus GN=Rnf2 PE=2
SV=1
Length = 308
Score = 82.4 bits (202), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 34/56 (60%), Positives = 41/56 (73%)
Query: 2 ECLHRFCRECIDKAMRLGNNECPACRTHCASRRSLRDDLNYDALIAALYPDIDKYE 57
ECLHRFC +CI A+R GN ECP CR S+RSLR D N+DALI+ +YP D+YE
Sbjct: 66 ECLHRFCADCIITALRSGNKECPTCRKKLVSKRSLRPDPNFDALISKIYPSRDEYE 121
>sp|Q6MGB6|RING1_RAT E3 ubiquitin-protein ligase RING1 OS=Rattus norvegicus GN=Ring1
PE=2 SV=2
Length = 406
Score = 80.9 bits (198), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 33/56 (58%), Positives = 41/56 (73%)
Query: 2 ECLHRFCRECIDKAMRLGNNECPACRTHCASRRSLRDDLNYDALIAALYPDIDKYE 57
ECLHRFC +CI A+R GN ECP CR S+RSLR D N+DALI+ +YP ++YE
Sbjct: 63 ECLHRFCSDCIVTALRSGNKECPTCRKKLVSKRSLRPDPNFDALISKIYPSREEYE 118
>sp|O35730|RING1_MOUSE E3 ubiquitin-protein ligase RING1 OS=Mus musculus GN=Ring1 PE=1
SV=2
Length = 406
Score = 80.9 bits (198), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 33/56 (58%), Positives = 41/56 (73%)
Query: 2 ECLHRFCRECIDKAMRLGNNECPACRTHCASRRSLRDDLNYDALIAALYPDIDKYE 57
ECLHRFC +CI A+R GN ECP CR S+RSLR D N+DALI+ +YP ++YE
Sbjct: 63 ECLHRFCSDCIVTALRSGNKECPTCRKKLVSKRSLRPDPNFDALISKIYPSREEYE 118
>sp|Q9VB08|RING1_DROME E3 ubiquitin-protein ligase RING1 OS=Drosophila melanogaster GN=Sce
PE=1 SV=1
Length = 435
Score = 80.5 bits (197), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 38/78 (48%), Positives = 50/78 (64%), Gaps = 4/78 (5%)
Query: 2 ECLHRFCRECIDKAMRLGNNECPACRTHCASRRSLRDDLNYDALIAALYPDIDKYEEEEL 61
ECLHRFC +CI A+R GN ECP CR S+RSLR D N+D LI+ +YP ++YE
Sbjct: 61 ECLHRFCSDCIVTALRSGNKECPTCRKKLVSKRSLRADPNFDLLISKIYPSREEYE---- 116
Query: 62 AFQDEEAARNKQIQASIA 79
A Q++ A+ Q Q+ A
Sbjct: 117 AIQEKVMAKFNQTQSQQA 134
>sp|Q06587|RING1_HUMAN E3 ubiquitin-protein ligase RING1 OS=Homo sapiens GN=RING1 PE=1
SV=2
Length = 406
Score = 80.5 bits (197), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 33/56 (58%), Positives = 41/56 (73%)
Query: 2 ECLHRFCRECIDKAMRLGNNECPACRTHCASRRSLRDDLNYDALIAALYPDIDKYE 57
ECLHRFC +CI A+R GN ECP CR S+RSLR D N+DALI+ +YP ++YE
Sbjct: 63 ECLHRFCSDCIVTALRSGNKECPTCRKKLVSKRSLRPDPNFDALISKIYPSREEYE 118
>sp|Q5TJF3|RING1_CANFA E3 ubiquitin-protein ligase RING1 OS=Canis familiaris GN=RING1 PE=3
SV=2
Length = 406
Score = 80.5 bits (197), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 33/56 (58%), Positives = 41/56 (73%)
Query: 2 ECLHRFCRECIDKAMRLGNNECPACRTHCASRRSLRDDLNYDALIAALYPDIDKYE 57
ECLHRFC +CI A+R GN ECP CR S+RSLR D N+DALI+ +YP ++YE
Sbjct: 63 ECLHRFCSDCIVTALRSGNKECPTCRKKLVSKRSLRPDPNFDALISKIYPSREEYE 118
>sp|A2T6X5|RING1_PANTR E3 ubiquitin-protein ligase RING1 OS=Pan troglodytes GN=RING1
PE=3 SV=1
Length = 377
Score = 80.1 bits (196), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 33/56 (58%), Positives = 41/56 (73%)
Query: 2 ECLHRFCRECIDKAMRLGNNECPACRTHCASRRSLRDDLNYDALIAALYPDIDKYE 57
ECLHRFC +CI A+R GN ECP CR S+RSLR D N+DALI+ +YP ++YE
Sbjct: 34 ECLHRFCSDCIVTALRSGNKECPTCRKKLVSKRSLRPDPNFDALISKIYPSREEYE 89
>sp|A1YFY1|RING1_PANPA E3 ubiquitin-protein ligase RING1 OS=Pan paniscus GN=RING1 PE=3
SV=1
Length = 377
Score = 80.1 bits (196), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 33/56 (58%), Positives = 41/56 (73%)
Query: 2 ECLHRFCRECIDKAMRLGNNECPACRTHCASRRSLRDDLNYDALIAALYPDIDKYE 57
ECLHRFC +CI A+R GN ECP CR S+RSLR D N+DALI+ +YP ++YE
Sbjct: 34 ECLHRFCSDCIVTALRSGNKECPTCRKKLVSKRSLRPDPNFDALISKIYPSREEYE 89
>sp|Q8WMN5|RING1_MACMU E3 ubiquitin-protein ligase RING1 OS=Macaca mulatta GN=RING1 PE=3
SV=1
Length = 377
Score = 80.1 bits (196), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 33/56 (58%), Positives = 41/56 (73%)
Query: 2 ECLHRFCRECIDKAMRLGNNECPACRTHCASRRSLRDDLNYDALIAALYPDIDKYE 57
ECLHRFC +CI A+R GN ECP CR S+RSLR D N+DALI+ +YP ++YE
Sbjct: 34 ECLHRFCSDCIVTALRSGNKECPTCRKKLVSKRSLRPDPNFDALISKIYPSREEYE 89
>sp|A1YER5|RING1_GORGO E3 ubiquitin-protein ligase RING1 OS=Gorilla gorilla gorilla
GN=RING1 PE=3 SV=1
Length = 377
Score = 80.1 bits (196), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 33/56 (58%), Positives = 41/56 (73%)
Query: 2 ECLHRFCRECIDKAMRLGNNECPACRTHCASRRSLRDDLNYDALIAALYPDIDKYE 57
ECLHRFC +CI A+R GN ECP CR S+RSLR D N+DALI+ +YP ++YE
Sbjct: 34 ECLHRFCSDCIVTALRSGNKECPTCRKKLVSKRSLRPDPNFDALISKIYPSREEYE 89
>sp|P87237|YC0C_SCHPO Uncharacterized RING finger protein C4G3.12c OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPCC4G3.12c PE=4 SV=1
Length = 821
Score = 40.8 bits (94), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 17/27 (62%)
Query: 3 CLHRFCRECIDKAMRLGNNECPACRTH 29
C H F + CID+ + GNN CP CR H
Sbjct: 785 CKHFFHQACIDQWLTTGNNSCPLCRAH 811
>sp|F6UA42|UHRF1_XENTR E3 ubiquitin-protein ligase UHRF1 OS=Xenopus tropicalis GN=uhrf1
PE=3 SV=2
Length = 775
Score = 40.0 bits (92), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 27/50 (54%)
Query: 2 ECLHRFCRECIDKAMRLGNNECPACRTHCASRRSLRDDLNYDALIAALYP 51
EC H C+ C+D++ + + CPACR SL + A+++ L+P
Sbjct: 720 ECHHNICKGCLDRSFKALVHNCPACRHDLGKNYSLNVNKPLQAILSQLFP 769
>sp|Q7YRV4|RO52_BOVIN E3 ubiquitin-protein ligase TRIM21 OS=Bos taurus GN=TRIM21 PE=2
SV=1
Length = 469
Score = 39.3 bits (90), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 19/29 (65%)
Query: 1 MECLHRFCRECIDKAMRLGNNECPACRTH 29
+EC H FC+ECI + + G + CP CR H
Sbjct: 29 IECGHSFCQECISEVGKEGGSVCPVCRRH 57
>sp|B6CHA3|UHRF1_XENLA E3 ubiquitin-protein ligase UHRF1 OS=Xenopus laevis GN=uhrf1 PE=2
SV=1
Length = 772
Score = 38.5 bits (88), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 26/50 (52%)
Query: 2 ECLHRFCRECIDKAMRLGNNECPACRTHCASRRSLRDDLNYDALIAALYP 51
EC H C+ C+D++ + + CPACR L + A+++ L+P
Sbjct: 717 ECHHNICKGCLDRSFKALVHSCPACRHDLGKNYPLNVNKPLQAILSQLFP 766
>sp|Q6NRG0|RNF8B_XENLA E3 ubiquitin-protein ligase RNF8-B OS=Xenopus laevis GN=rnf8-b PE=2
SV=1
Length = 532
Score = 38.5 bits (88), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Query: 1 MECLHRFCRECIDKAMRLGNNECPACRTHCASR-RSLRDDLNYDALIAALYPDI 53
+ C H FC CI K+ R ECP CR S RSL D D+++ L P++
Sbjct: 390 LNCAHSFCSYCI-KSWRKRKEECPICRQEILSETRSLVLDNCIDSMVDKLSPEM 442
>sp|E7EZF3|UHRF1_DANRE E3 ubiquitin-protein ligase UHRF1 OS=Danio rerio GN=uhrf1 PE=1 SV=1
Length = 776
Score = 38.5 bits (88), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 24/50 (48%)
Query: 2 ECLHRFCRECIDKAMRLGNNECPACRTHCASRRSLRDDLNYDALIAALYP 51
EC H CREC+ ++ + CPACR + + A++ L+P
Sbjct: 720 ECQHNVCRECLQRSFKAKVYTCPACRHDLGKNYQMAVNKPLQAILTQLFP 769
>sp|Q9P7E1|YOF7_SCHPO Uncharacterized RING finger protein P4H10.07 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPBP4H10.07 PE=1 SV=1
Length = 583
Score = 37.7 bits (86), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 17/27 (62%)
Query: 2 ECLHRFCRECIDKAMRLGNNECPACRT 28
+C H F RECID+ + N CP CRT
Sbjct: 543 QCNHFFHRECIDQWLTSSQNSCPLCRT 569
>sp|Q7ZX20|RNF8A_XENLA E3 ubiquitin-protein ligase RNF8-A OS=Xenopus laevis GN=rnf8-a PE=2
SV=1
Length = 540
Score = 37.4 bits (85), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Query: 1 MECLHRFCRECIDKAMRLGNNECPACRTHCASR-RSLRDDLNYDALIAALYPDI 53
+ C H FC CI K+ + ECP CR + RSL D D+++ L P++
Sbjct: 395 LNCAHSFCSYCI-KSWKKRKEECPICRQEIVTETRSLVLDNCIDSMVDKLSPEM 447
>sp|P35227|PCGF2_HUMAN Polycomb group RING finger protein 2 OS=Homo sapiens GN=PCGF2
PE=1 SV=1
Length = 344
Score = 37.4 bits (85), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 28/60 (46%), Gaps = 4/60 (6%)
Query: 1 MECLHRFCRECIDKAMRLGNNECPACRTHCASRR---SLRDDLNYDALIAALYPDIDKYE 57
+ECLH FC+ CI + + N CP C R S+R D ++ L P + K E
Sbjct: 32 VECLHSFCKTCIVRYLET-NKYCPMCDVQVHKTRPLLSIRSDKTLQDIVYKLVPGLFKDE 90
>sp|B3DK16|PCF5A_DANRE Polycomb group RING finger protein 5-A OS=Danio rerio GN=pcgf5a
PE=2 SV=1
Length = 234
Score = 37.4 bits (85), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 37/79 (46%), Gaps = 8/79 (10%)
Query: 2 ECLHRFCRECIDKAMRLGNNECPACRTHCASRRS---LRDDLNYDALIAALYPDIDKYEE 58
ECLH FC+ CI + +NECP C LR D + +I L P + + EE
Sbjct: 33 ECLHTFCKSCIVQHFE-ESNECPECGIQVHETNPLEMLRLDKTLEEIIFKLVPGLREKEE 91
Query: 59 EELAFQDEEAARNKQIQAS 77
Q+ E R +I+++
Sbjct: 92 H----QESEFWRKHKIKSN 106
>sp|Q07G17|PCGF3_XENTR Polycomb group RING finger protein 3 OS=Xenopus tropicalis
GN=pcgf3 PE=2 SV=1
Length = 242
Score = 37.4 bits (85), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 15/26 (57%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
Query: 2 ECLHRFCRECIDKAMRLGNNECPACR 27
ECLH FCR C+ K + NN CP CR
Sbjct: 32 ECLHTFCRSCLVKYLE-ENNTCPTCR 56
>sp|Q3KNV8|PCGF3_HUMAN Polycomb group RING finger protein 3 OS=Homo sapiens GN=PCGF3
PE=1 SV=1
Length = 242
Score = 37.0 bits (84), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 15/26 (57%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
Query: 2 ECLHRFCRECIDKAMRLGNNECPACR 27
ECLH FCR C+ K + NN CP CR
Sbjct: 32 ECLHTFCRSCLVKYLE-ENNTCPTCR 56
>sp|P19474|RO52_HUMAN E3 ubiquitin-protein ligase TRIM21 OS=Homo sapiens GN=TRIM21 PE=1
SV=1
Length = 475
Score = 37.0 bits (84), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 18/27 (66%)
Query: 1 MECLHRFCRECIDKAMRLGNNECPACR 27
+EC H FC+ECI + + G + CP CR
Sbjct: 29 IECGHSFCQECISQVGKGGGSVCPVCR 55
>sp|Q2KJ29|PCGF3_BOVIN Polycomb group RING finger protein 3 OS=Bos taurus GN=PCGF3 PE=2
SV=1
Length = 242
Score = 37.0 bits (84), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 15/26 (57%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
Query: 2 ECLHRFCRECIDKAMRLGNNECPACR 27
ECLH FCR C+ K + NN CP CR
Sbjct: 32 ECLHTFCRSCLVKYLE-ENNTCPTCR 56
>sp|A7E320|UHRF1_BOVIN E3 ubiquitin-protein ligase UHRF1 OS=Bos taurus GN=UHRF1 PE=2 SV=1
Length = 786
Score = 37.0 bits (84), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 13/49 (26%), Positives = 26/49 (53%)
Query: 3 CLHRFCRECIDKAMRLGNNECPACRTHCASRRSLRDDLNYDALIAALYP 51
C H C++C+D++ + CPACR ++ + A+++ L+P
Sbjct: 732 CQHNVCKDCLDRSFKAQVFSCPACRYDLGRSYAMTVNQPLQAVLSQLFP 780
>sp|Q8BTQ0|PCGF3_MOUSE Polycomb group RING finger protein 3 OS=Mus musculus GN=PcgF3
PE=2 SV=1
Length = 241
Score = 37.0 bits (84), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 15/26 (57%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
Query: 2 ECLHRFCRECIDKAMRLGNNECPACR 27
ECLH FCR C+ K + NN CP CR
Sbjct: 32 ECLHTFCRSCLVKYLE-ENNTCPTCR 56
>sp|P23798|PCGF2_MOUSE Polycomb group RING finger protein 2 OS=Mus musculus GN=Pcgf2
PE=1 SV=2
Length = 342
Score = 37.0 bits (84), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 28/60 (46%), Gaps = 4/60 (6%)
Query: 1 MECLHRFCRECIDKAMRLGNNECPACRTHCASRR---SLRDDLNYDALIAALYPDIDKYE 57
+ECLH FC+ CI + + N CP C R S+R D ++ L P + K E
Sbjct: 32 VECLHSFCKTCIVRYLET-NKYCPMCDVQVHKTRPLLSIRSDKTLQDIVYKLVPGLFKDE 90
>sp|Q9LS86|DRIPH_ARATH Probable E3 ubiquitin protein ligase DRIPH OS=Arabidopsis
thaliana GN=At3g23060 PE=2 SV=1
Length = 480
Score = 36.6 bits (83), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 24/52 (46%), Gaps = 3/52 (5%)
Query: 2 ECLHRFCRECI-DKAMRLGNNECPACRTHCA--SRRSLRDDLNYDALIAALY 50
ECLH FCR CI +K + N CP C + LR D + L +Y
Sbjct: 31 ECLHTFCRSCIRNKFINERVNACPVCNVNLGVFPLEKLRSDCTWQDLKLKIY 82
>sp|P15918|RAG1_HUMAN V(D)J recombination-activating protein 1 OS=Homo sapiens GN=RAG1
PE=1 SV=2
Length = 1043
Score = 36.2 bits (82), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 3 CLHRFCRECIDKAMRLGNNECPACRTHC 30
C H FCR CI + +++ + CP+CR C
Sbjct: 308 CKHVFCRVCILRCLKVMGSYCPSCRYPC 335
>sp|Q8VDF2|UHRF1_MOUSE E3 ubiquitin-protein ligase UHRF1 OS=Mus musculus GN=Uhrf1 PE=1
SV=2
Length = 782
Score = 35.8 bits (81), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 23/49 (46%)
Query: 3 CLHRFCRECIDKAMRLGNNECPACRTHCASRRSLRDDLNYDALIAALYP 51
C H C++C+D++ R CPACR R + ++ L+P
Sbjct: 728 CQHNVCKDCLDRSFRAQVFSCPACRFELDHSSPTRVNQPLQTILNQLFP 776
>sp|Q8RXD4|BRCA1_ARATH Protein BREAST CANCER SUSCEPTIBILITY 1 homolog OS=Arabidopsis
thaliana GN=BRCA1 PE=2 SV=1
Length = 941
Score = 35.8 bits (81), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 32/54 (59%), Gaps = 3/54 (5%)
Query: 1 MECLHRFCRECIDKAMRLGNNECPACRTHCASRRSLRDDLNYDALIAALYPDID 54
+ C H FC CI K+M++ + CP C+ RR +R + D+L+ ++Y +++
Sbjct: 29 LSCNHVFCNACIVKSMKM-DATCPVCKIP-YHRREIRGAPHMDSLV-SIYKNME 79
>sp|P15919|RAG1_MOUSE V(D)J recombination-activating protein 1 OS=Mus musculus GN=Rag1
PE=1 SV=2
Length = 1040
Score = 35.8 bits (81), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 3 CLHRFCRECIDKAMRLGNNECPACRTHC 30
C H FCR CI + +++ + CP+CR C
Sbjct: 305 CKHLFCRICILRCLKVMGSYCPSCRYPC 332
>sp|Q96T88|UHRF1_HUMAN E3 ubiquitin-protein ligase UHRF1 OS=Homo sapiens GN=UHRF1 PE=1
SV=1
Length = 793
Score = 35.8 bits (81), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 13/49 (26%), Positives = 25/49 (51%)
Query: 3 CLHRFCRECIDKAMRLGNNECPACRTHCASRRSLRDDLNYDALIAALYP 51
C H C++C+D++ R CPACR +++ + ++ L+P
Sbjct: 739 CQHNVCKDCLDRSFRAQVFSCPACRYDLGRSYAMQVNQPLQTVLNQLFP 787
>sp|Q7TPK1|UHRF1_RAT E3 ubiquitin-protein ligase UHRF1 OS=Rattus norvegicus GN=Uhrf1
PE=2 SV=2
Length = 774
Score = 35.4 bits (80), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 23/49 (46%)
Query: 3 CLHRFCRECIDKAMRLGNNECPACRTHCASRRSLRDDLNYDALIAALYP 51
C H C++C+D++ R CPACR R + ++ L+P
Sbjct: 720 CQHNVCKDCLDRSFRAQVFSCPACRYDLDHSSPTRVNQPLQTILNQLFP 768
>sp|Q9C895|BRE1B_ARATH E3 ubiquitin-protein ligase BRE1-like 2 OS=Arabidopsis thaliana
GN=HUB2 PE=1 SV=2
Length = 900
Score = 35.4 bits (80), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 20/28 (71%)
Query: 1 MECLHRFCRECIDKAMRLGNNECPACRT 28
++C H FC++CI +++ + + +CP C T
Sbjct: 861 VKCYHLFCQQCIQRSLEIRHRKCPGCGT 888
>sp|Q62191|RO52_MOUSE E3 ubiquitin-protein ligase TRIM21 OS=Mus musculus GN=Trim21 PE=1
SV=1
Length = 470
Score = 35.4 bits (80), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 18/27 (66%)
Query: 1 MECLHRFCRECIDKAMRLGNNECPACR 27
+EC H FC+ECI + + G + CP CR
Sbjct: 33 IECGHCFCKECIFEVGKNGGSSCPECR 59
>sp|F1MRW8|RN169_BOVIN E3 ubiquitin-protein ligase RNF169 OS=Bos taurus GN=RNF169 PE=3
SV=3
Length = 689
Score = 35.4 bits (80), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 22/48 (45%), Gaps = 2/48 (4%)
Query: 1 MECLHRFCRECIDKAMRLGNNECPACRTHCA--SRRSLRDDLNYDALI 46
+ C H CR C +A CP CR A +RR RDD DA +
Sbjct: 62 LPCGHSLCRGCAQRAADAAGPCCPRCRARGAGWARRRARDDWQADAEV 109
>sp|Q9M9Y4|DRIP1_ARATH E3 ubiquitin protein ligase DRIP1 OS=Arabidopsis thaliana
GN=DRIP1 PE=1 SV=2
Length = 421
Score = 35.4 bits (80), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 25/52 (48%), Gaps = 3/52 (5%)
Query: 2 ECLHRFCRECIDKAMRLGNNE-CPACRTHCASR--RSLRDDLNYDALIAALY 50
ECLH FCR+CI + + E CP C S LR D N L A ++
Sbjct: 31 ECLHTFCRKCIYEKITEDEIETCPVCNIDLGSTPLEKLRPDHNLQDLRAKIF 82
>sp|Q91829|RAG1_XENLA V(D)J recombination-activating protein 1 OS=Xenopus laevis GN=rag1
PE=2 SV=1
Length = 1045
Score = 35.0 bits (79), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 3 CLHRFCRECIDKAMRLGNNECPACRTHC 30
C H FCR CI K ++L CP+C+ C
Sbjct: 309 CKHLFCRICILKYIKLMGCYCPSCKYPC 336
>sp|P0CQ63|BRE1_CRYNB E3 ubiquitin-protein ligase BRE1 OS=Cryptococcus neoformans var.
neoformans serotype D (strain B-3501A) GN=BRE1 PE=3 SV=1
Length = 820
Score = 35.0 bits (79), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 9/26 (34%), Positives = 19/26 (73%)
Query: 1 MECLHRFCRECIDKAMRLGNNECPAC 26
++C+H FC++C+++ + +CPAC
Sbjct: 780 VKCMHTFCKQCLEQRIASRQRKCPAC 805
>sp|Q5SDR3|BMI1_CHICK Polycomb complex protein BMI-1 OS=Gallus gallus GN=BMI1 PE=2 SV=1
Length = 326
Score = 35.0 bits (79), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 27/60 (45%), Gaps = 4/60 (6%)
Query: 1 MECLHRFCRECIDKAMRLGNNECPACRTHCASRRSL---RDDLNYDALIAALYPDIDKYE 57
+ECLH FC+ CI + + + CP C R L R D ++ L P + K E
Sbjct: 32 IECLHSFCKTCIVRYLET-SKYCPICDVQVHKTRPLLNIRSDKTLQDIVYKLVPGLFKNE 90
>sp|P0CQ62|BRE1_CRYNJ E3 ubiquitin-protein ligase BRE1 OS=Cryptococcus neoformans var.
neoformans serotype D (strain JEC21 / ATCC MYA-565)
GN=BRE1 PE=3 SV=1
Length = 820
Score = 35.0 bits (79), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 9/26 (34%), Positives = 19/26 (73%)
Query: 1 MECLHRFCRECIDKAMRLGNNECPAC 26
++C+H FC++C+++ + +CPAC
Sbjct: 780 VKCMHTFCKQCLEQRIASRQRKCPAC 805
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.131 0.380
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 132,771,271
Number of Sequences: 539616
Number of extensions: 5610609
Number of successful extensions: 21055
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 205
Number of HSP's that attempted gapping in prelim test: 20721
Number of HSP's gapped (non-prelim): 478
length of query: 359
length of database: 191,569,459
effective HSP length: 119
effective length of query: 240
effective length of database: 127,355,155
effective search space: 30565237200
effective search space used: 30565237200
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 62 (28.5 bits)