Query 018247
Match_columns 359
No_of_seqs 190 out of 1038
Neff 4.3
Searched_HMMs 46136
Date Fri Mar 29 07:22:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018247.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018247hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0311 Predicted E3 ubiquitin 100.0 1.5E-31 3.2E-36 261.9 12.5 308 2-357 61-378 (381)
2 KOG2660 Locus-specific chromos 99.4 2.5E-13 5.5E-18 133.1 8.6 65 1-66 32-100 (331)
3 smart00504 Ubox Modified RING 98.4 1.9E-07 4E-12 69.6 3.8 46 1-48 17-62 (63)
4 TIGR00599 rad18 DNA repair pro 98.4 4E-07 8.7E-12 92.4 4.9 48 1-50 42-89 (397)
5 PF15227 zf-C3HC4_4: zinc fing 98.3 4.8E-07 1E-11 64.6 2.6 26 1-26 14-42 (42)
6 KOG0287 Postreplication repair 98.2 7.8E-07 1.7E-11 88.7 3.3 47 1-49 39-85 (442)
7 PF13923 zf-C3HC4_2: Zinc fing 98.1 1.5E-06 3.3E-11 60.2 2.3 25 1-26 15-39 (39)
8 PF13639 zf-RING_2: Ring finge 98.1 8.7E-07 1.9E-11 62.7 0.9 26 1-27 19-44 (44)
9 PF00097 zf-C3HC4: Zinc finger 98.1 2.5E-06 5.3E-11 59.1 2.4 26 1-26 15-41 (41)
10 KOG2177 Predicted E3 ubiquitin 98.1 3.6E-06 7.9E-11 74.7 4.0 46 1-50 29-74 (386)
11 COG5432 RAD18 RING-finger-cont 98.0 3E-06 6.5E-11 83.3 3.3 47 1-49 41-87 (391)
12 PF04564 U-box: U-box domain; 98.0 4.4E-06 9.5E-11 65.6 3.1 48 1-49 20-67 (73)
13 TIGR00570 cdk7 CDK-activating 98.0 5.1E-06 1.1E-10 82.0 3.6 30 2-31 25-54 (309)
14 cd00162 RING RING-finger (Real 98.0 6E-06 1.3E-10 55.9 2.8 28 2-29 17-44 (45)
15 PLN03208 E3 ubiquitin-protein 97.9 4.7E-06 1E-10 77.5 2.2 31 1-31 34-79 (193)
16 PF14835 zf-RING_6: zf-RING of 97.9 3.7E-06 8E-11 65.9 0.8 41 2-46 25-65 (65)
17 PF13920 zf-C3HC4_3: Zinc fing 97.9 8.8E-06 1.9E-10 59.1 2.3 30 1-31 18-48 (50)
18 PF14634 zf-RING_5: zinc-RING 97.8 1.3E-05 2.9E-10 57.1 2.0 27 1-28 18-44 (44)
19 smart00184 RING Ring finger. E 97.7 1.9E-05 4.2E-10 51.5 2.0 26 1-26 14-39 (39)
20 KOG0823 Predicted E3 ubiquitin 97.5 3.3E-05 7.2E-10 73.5 1.7 31 1-31 63-95 (230)
21 PF13445 zf-RING_UBOX: RING-ty 97.3 0.00014 2.9E-09 52.6 1.6 24 1-24 17-43 (43)
22 KOG2164 Predicted E3 ubiquitin 97.2 0.00019 4.2E-09 74.8 2.2 33 1-33 202-238 (513)
23 PF12678 zf-rbx1: RING-H2 zinc 97.1 0.0003 6.4E-09 55.5 2.3 25 2-27 49-73 (73)
24 PF11816 DUF3337: Domain of un 97.0 0.0012 2.6E-08 65.4 6.4 84 250-357 214-330 (331)
25 KOG4159 Predicted E3 ubiquitin 96.9 0.00052 1.1E-08 70.2 3.0 52 1-53 100-155 (398)
26 KOG4739 Uncharacterized protei 96.3 0.0053 1.2E-07 58.9 4.9 47 1-53 21-67 (233)
27 PF12861 zf-Apc11: Anaphase-pr 96.2 0.0029 6.3E-08 52.2 2.2 30 2-31 51-82 (85)
28 KOG0802 E3 ubiquitin ligase [P 95.6 0.0046 1E-07 65.0 1.3 29 1-30 312-340 (543)
29 COG5222 Uncharacterized conser 95.5 0.013 2.9E-07 58.4 3.9 42 2-56 292-333 (427)
30 KOG0297 TNF receptor-associate 95.3 0.01 2.2E-07 60.4 2.5 46 1-47 38-83 (391)
31 KOG0824 Predicted E3 ubiquitin 95.2 0.0099 2.2E-07 59.0 1.8 32 1-32 23-54 (324)
32 KOG1002 Nucleotide excision re 94.7 0.014 2.9E-07 62.0 1.4 31 1-31 552-586 (791)
33 KOG1039 Predicted E3 ubiquitin 94.3 0.019 4.2E-07 57.9 1.4 29 2-30 186-220 (344)
34 PF11789 zf-Nse: Zinc-finger o 94.3 0.02 4.4E-07 43.6 1.2 26 2-27 29-57 (57)
35 KOG0825 PHD Zn-finger protein 94.1 0.022 4.8E-07 62.6 1.5 30 1-31 142-171 (1134)
36 KOG4185 Predicted E3 ubiquitin 94.0 0.04 8.7E-07 52.9 2.9 48 2-49 26-77 (296)
37 KOG4628 Predicted E3 ubiquitin 93.8 0.037 8.1E-07 55.9 2.4 31 1-31 248-278 (348)
38 KOG1785 Tyrosine kinase negati 92.7 0.05 1.1E-06 56.2 1.3 32 2-33 386-418 (563)
39 PF14570 zf-RING_4: RING/Ubox 92.1 0.11 2.5E-06 38.7 2.2 29 2-30 19-47 (48)
40 COG5243 HRD1 HRD ubiquitin lig 92.0 0.097 2.1E-06 53.7 2.3 29 1-30 316-344 (491)
41 PF04641 Rtf2: Rtf2 RING-finge 90.7 0.12 2.7E-06 49.6 1.6 31 2-34 134-164 (260)
42 KOG1493 Anaphase-promoting com 90.4 0.088 1.9E-06 43.2 0.2 29 3-31 51-81 (84)
43 KOG2932 E3 ubiquitin ligase in 89.5 0.14 2.9E-06 51.6 0.8 27 1-30 107-133 (389)
44 KOG1001 Helicase-like transcri 88.9 0.16 3.4E-06 55.5 0.7 31 1-31 469-500 (674)
45 KOG3800 Predicted E3 ubiquitin 88.0 0.38 8.1E-06 47.8 2.7 29 2-30 22-50 (300)
46 cd01611 GABARAP Ubiquitin doma 87.9 1.4 3.1E-05 37.8 5.9 82 251-356 25-108 (112)
47 KOG4172 Predicted E3 ubiquitin 86.1 0.39 8.5E-06 37.3 1.3 29 2-30 24-53 (62)
48 KOG1814 Predicted E3 ubiquitin 85.8 0.35 7.7E-06 50.1 1.2 29 1-29 203-238 (445)
49 KOG0827 Predicted E3 ubiquitin 85.0 0.54 1.2E-05 48.6 2.1 30 2-31 25-56 (465)
50 PF14447 Prok-RING_4: Prokaryo 84.8 0.34 7.4E-06 37.2 0.4 28 1-31 23-50 (55)
51 cd01612 APG12_C Ubiquitin-like 84.2 3.6 7.8E-05 33.9 6.2 72 262-356 11-83 (87)
52 COG5194 APC11 Component of SCF 83.8 0.69 1.5E-05 38.3 1.8 29 2-31 53-81 (88)
53 KOG3039 Uncharacterized conser 81.2 1.1 2.4E-05 44.1 2.4 30 2-32 242-271 (303)
54 KOG0804 Cytoplasmic Zn-finger 80.8 0.61 1.3E-05 48.9 0.6 27 1-30 195-221 (493)
55 PHA03096 p28-like protein; Pro 80.7 0.91 2E-05 44.9 1.7 27 2-28 203-231 (284)
56 PF04110 APG12: Ubiquitin-like 78.7 3.4 7.3E-05 34.4 4.2 82 251-357 2-84 (87)
57 cd01806 Nedd8 Nebb8-like ubiq 75.4 5.1 0.00011 30.3 4.1 44 252-301 2-45 (76)
58 cd01803 Ubiquitin Ubiquitin. U 75.1 4.6 9.9E-05 30.6 3.8 43 253-301 3-45 (76)
59 PF02991 Atg8: Autophagy prote 73.2 9.2 0.0002 32.6 5.5 81 251-354 17-98 (104)
60 KOG1734 Predicted RING-contain 72.0 1.4 2.9E-05 43.9 0.3 31 1-31 250-281 (328)
61 COG3813 Uncharacterized protei 71.8 2.9 6.3E-05 34.2 2.1 35 4-42 28-62 (84)
62 PF06844 DUF1244: Protein of u 67.2 3.1 6.8E-05 33.2 1.3 13 6-18 11-23 (68)
63 COG5236 Uncharacterized conser 66.3 3.5 7.7E-05 42.4 1.9 28 1-29 77-106 (493)
64 PF06906 DUF1272: Protein of u 66.2 5.1 0.00011 31.1 2.2 25 6-33 30-54 (57)
65 KOG1645 RING-finger-containing 64.5 6.9 0.00015 40.9 3.6 76 269-351 372-449 (463)
66 PF11543 UN_NPL4: Nuclear pore 63.3 6.1 0.00013 31.9 2.4 60 271-352 18-77 (80)
67 KOG1941 Acetylcholine receptor 62.6 3.6 7.9E-05 42.9 1.2 28 1-28 385-413 (518)
68 PF00240 ubiquitin: Ubiquitin 61.5 13 0.00028 27.7 3.8 32 271-302 10-41 (69)
69 PHA02862 5L protein; Provision 61.4 5.6 0.00012 36.3 2.0 25 9-33 30-55 (156)
70 cd01807 GDX_N ubiquitin-like d 59.2 17 0.00037 27.9 4.2 40 257-302 7-46 (74)
71 cd01798 parkin_N amino-termina 58.9 11 0.00023 28.7 2.9 32 271-302 13-44 (70)
72 PF03854 zf-P11: P-11 zinc fin 57.3 4.9 0.00011 30.3 0.8 27 4-31 20-46 (50)
73 PF14569 zf-UDP: Zinc-binding 56.4 9.6 0.00021 31.4 2.4 30 2-31 33-62 (80)
74 cd01793 Fubi Fubi ubiquitin-li 54.7 17 0.00037 28.0 3.5 32 270-301 12-43 (74)
75 cd01805 RAD23_N Ubiquitin-like 54.1 18 0.00038 27.6 3.5 32 270-301 14-47 (77)
76 cd00196 UBQ Ubiquitin-like pro 51.6 22 0.00047 23.3 3.2 35 271-305 12-46 (69)
77 cd01794 DC_UbP_C dendritic cel 50.8 17 0.00036 28.3 2.9 32 271-302 13-44 (70)
78 cd01796 DDI1_N DNA damage indu 50.3 17 0.00038 28.0 2.9 33 271-303 14-46 (71)
79 cd01809 Scythe_N Ubiquitin-lik 50.1 29 0.00063 25.8 4.0 31 271-301 15-45 (72)
80 KOG1812 Predicted E3 ubiquitin 48.9 10 0.00022 38.9 1.8 29 2-30 167-202 (384)
81 cd01769 UBL Ubiquitin-like dom 48.6 24 0.00053 25.5 3.4 31 271-301 12-42 (69)
82 cd01776 Rin1_RA Ubiquitin doma 48.4 28 0.0006 29.2 3.9 35 271-305 18-53 (87)
83 smart00213 UBQ Ubiquitin homol 46.1 28 0.0006 24.9 3.3 32 271-302 14-45 (64)
84 cd01791 Ubl5 UBL5 ubiquitin-li 44.9 41 0.00089 26.4 4.3 30 271-300 16-45 (73)
85 COG5175 MOT2 Transcriptional r 44.5 15 0.00032 38.0 2.1 30 2-31 35-64 (480)
86 COG3492 Uncharacterized protei 44.0 11 0.00024 32.1 1.0 13 6-18 42-54 (104)
87 PTZ00044 ubiquitin; Provisiona 43.9 26 0.00055 26.7 2.9 31 271-301 15-45 (76)
88 KOG0825 PHD Zn-finger protein 43.2 11 0.00023 42.6 1.0 28 2-29 120-152 (1134)
89 PHA02825 LAP/PHD finger-like p 42.9 16 0.00035 33.8 1.9 23 9-31 36-59 (162)
90 cd01802 AN1_N ubiquitin-like d 42.7 46 0.001 27.9 4.5 32 271-302 42-73 (103)
91 cd01788 ElonginB Ubiquitin-lik 40.6 26 0.00056 30.9 2.7 31 270-300 15-45 (119)
92 PF11793 FANCL_C: FANCL C-term 39.6 8 0.00017 30.3 -0.5 30 2-31 27-66 (70)
93 KOG0298 DEAD box-containing he 38.7 13 0.00028 43.9 0.7 28 2-30 1171-1198(1394)
94 KOG4362 Transcriptional regula 38.2 14 0.00031 40.8 1.0 47 1-48 37-85 (684)
95 KOG3439 Protein conjugation fa 38.1 42 0.0009 29.5 3.6 84 247-357 29-113 (116)
96 PRK00647 hypothetical protein; 37.2 29 0.00063 29.4 2.5 38 247-300 27-64 (96)
97 PF07975 C1_4: TFIIH C1-like d 36.5 23 0.00051 26.8 1.6 25 2-27 26-50 (51)
98 PF02594 DUF167: Uncharacteris 36.3 31 0.00068 27.7 2.4 21 280-300 43-63 (77)
99 PLN02638 cellulose synthase A 34.9 22 0.00048 41.3 1.8 30 2-31 41-70 (1079)
100 smart00744 RINGv The RING-vari 34.1 29 0.00063 25.5 1.8 23 5-27 26-49 (49)
101 KOG3113 Uncharacterized conser 33.7 29 0.00063 34.5 2.2 40 2-44 132-171 (293)
102 PLN02195 cellulose synthase A 33.1 25 0.00054 40.5 1.9 30 2-31 30-59 (977)
103 KOG1815 Predicted E3 ubiquitin 32.8 22 0.00048 36.8 1.3 18 1-18 87-104 (444)
104 PLN02189 cellulose synthase 32.6 25 0.00053 40.8 1.7 30 2-31 58-87 (1040)
105 PLN02436 cellulose synthase A 31.9 25 0.00055 40.8 1.7 30 2-31 60-89 (1094)
106 KOG3161 Predicted E3 ubiquitin 31.4 50 0.0011 36.8 3.7 24 1-28 31-54 (861)
107 KOG0006 E3 ubiquitin-protein l 30.6 45 0.00098 34.3 3.0 28 276-303 23-50 (446)
108 PF10497 zf-4CXXC_R1: Zinc-fin 30.3 84 0.0018 26.7 4.2 28 4-31 37-72 (105)
109 PF14560 Ubiquitin_2: Ubiquiti 29.2 98 0.0021 24.5 4.2 34 271-304 18-51 (87)
110 cd01812 BAG1_N Ubiquitin-like 28.5 70 0.0015 23.8 3.1 32 271-302 14-45 (71)
111 PF11976 Rad60-SLD: Ubiquitin- 28.4 1.1E+02 0.0025 22.9 4.3 50 251-306 1-51 (72)
112 KOG4495 RNA polymerase II tran 28.4 59 0.0013 28.1 2.9 33 270-302 15-47 (110)
113 KOG2114 Vacuolar assembly/sort 27.9 26 0.00056 39.9 0.8 24 2-29 858-881 (933)
114 PRK01310 hypothetical protein; 27.9 53 0.0011 28.1 2.6 37 248-300 39-75 (104)
115 KOG4185 Predicted E3 ubiquitin 27.6 18 0.0004 34.8 -0.3 29 3-31 239-267 (296)
116 PLN02915 cellulose synthase A 27.0 35 0.00076 39.6 1.7 30 2-31 39-68 (1044)
117 PRK05090 hypothetical protein; 26.9 56 0.0012 27.5 2.5 39 246-300 31-69 (95)
118 cd01808 hPLIC_N Ubiquitin-like 26.7 73 0.0016 24.2 3.0 30 271-300 14-43 (71)
119 KOG4021 Mitochondrial ribosoma 26.0 32 0.00069 33.1 1.0 22 9-30 97-118 (239)
120 PF14552 Tautomerase_2: Tautom 25.7 79 0.0017 25.7 3.1 27 279-305 49-75 (82)
121 PLN02248 cellulose synthase-li 25.2 44 0.00096 39.1 2.1 28 2-30 149-176 (1135)
122 PF10083 DUF2321: Uncharacteri 25.1 36 0.00078 31.4 1.1 45 5-53 28-81 (158)
123 KOG3970 Predicted E3 ubiquitin 24.5 44 0.00095 32.9 1.6 32 1-32 68-106 (299)
124 PF06869 DUF1258: Protein of u 24.4 39 0.00084 33.4 1.3 52 4-58 17-70 (258)
125 cd01810 ISG15_repeat2 ISG15 ub 24.4 85 0.0018 24.1 3.0 31 271-301 13-43 (74)
126 cd01792 ISG15_repeat1 ISG15 ub 24.1 1.4E+02 0.0031 23.3 4.2 45 251-301 3-47 (80)
127 PRK01530 hypothetical protein; 23.6 66 0.0014 27.6 2.4 38 247-300 39-76 (105)
128 PF13240 zinc_ribbon_2: zinc-r 23.0 14 0.00031 23.4 -1.3 22 7-29 1-22 (23)
129 PLN02400 cellulose synthase 22.6 36 0.00077 39.7 0.7 30 2-31 60-89 (1085)
130 PRK04179 rpl37e 50S ribosomal 22.2 23 0.0005 28.0 -0.6 25 4-28 16-40 (62)
131 KOG3663 Nuclear factor I [Tran 21.7 1.1E+02 0.0024 32.5 3.9 56 236-292 117-185 (518)
132 PF04423 Rad50_zn_hook: Rad50 21.7 33 0.00072 25.3 0.2 10 22-31 22-31 (54)
133 COG4640 Predicted membrane pro 21.7 35 0.00076 35.9 0.4 39 6-46 2-40 (465)
134 COG5220 TFB3 Cdk activating ki 21.6 28 0.0006 34.5 -0.3 28 2-29 33-62 (314)
135 KOG3002 Zn finger protein [Gen 21.5 28 0.0006 34.9 -0.3 24 4-31 68-91 (299)
136 COG1872 Uncharacterized conser 21.4 89 0.0019 26.9 2.7 21 280-300 53-73 (102)
137 cd01760 RBD Ubiquitin-like dom 20.8 1.5E+02 0.0033 23.6 3.8 43 263-305 6-48 (72)
138 PRK14559 putative protein seri 20.7 37 0.00081 37.4 0.4 24 5-31 15-38 (645)
139 cd01804 midnolin_N Ubiquitin-l 20.5 1.2E+02 0.0025 23.8 3.1 32 271-302 16-47 (78)
No 1
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1.5e-31 Score=261.87 Aligned_cols=308 Identities=34% Similarity=0.468 Sum_probs=231.5
Q ss_pred CCCccccHHHHHHHHhcCCCCcccccccccCCCCCCCChHHHHHHHHHCCChHHHHHHHHhhhHHHHHHHHH-Hhhhhhh
Q 018247 2 ECLHRFCRECIDKAMRLGNNECPACRTHCASRRSLRDDLNYDALIAALYPDIDKYEEEELAFQDEEAARNKQ-IQASIAQ 80 (359)
Q Consensus 2 ~CGHtFCR~CI~k~~~~~~~~CPvCR~~~~~~~~LRpn~~L~~Liekl~P~l~~~e~~e~af~e~~k~~~~~-iq~~i~~ 80 (359)
+|+|.||..||.+.++.+++.||.||+.+.++++|++|++|..||.++||.++.|+..+..|.+++...+.+ |+.+|.+
T Consensus 61 eClhrfc~~ci~~a~r~gn~ecptcRk~l~SkrsLr~Dp~fdaLis~i~~sie~~e~~q~~~~ekd~~~~~q~i~~si~~ 140 (381)
T KOG0311|consen 61 ECLHRFCFDCIWKALRSGNNECPTCRKKLVSKRSLRIDPNFDALISKIYPSIEEYEAPQPRFMEKDDSAQIQYIKTSINA 140 (381)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCchHHhhccccccCCCCccHHHHHHHHhccHHHHhccchhHHhhHHHHhHHHHhhhHHH
Confidence 699999999999999888999999999999999999999999999999999999999999999988887777 9999999
Q ss_pred hHHHHHHHhhccCCCCcchhhhccccCCCCCccCCCCCCcccccCC-CC-CcccCCC---CCCCCCCCCcccccccchhh
Q 018247 81 TFQRQTEALGRKRTPKSTSALRRSHGRYRDTPLRGRRNYRMTELQG-SD-ENDDANG---DAGKDSSSADERSTEVRPKR 155 (359)
Q Consensus 81 ~~~rq~~sl~~~~~~~~~~~~rrt~~~~r~~~~~~r~~~~~~~~~~-~~-~~~~~~~---~~~~~sss~d~~~~~~~~kr 155 (359)
..++|+..++++...... |+.+..- .++++++.+..+.+. +. +++++|. +-++++|+ |+.. ...|
T Consensus 141 ~~~~qs~~~~kr~a~~~~----~s~r~g~--Gs~~~gn~r~~~~s~~~a~~ea~~~~~~n~rg~~ss~-d~~~---~~~~ 210 (381)
T KOG0311|consen 141 AVDHQSSYLTKRKALEEL----RSIRWGG--GSRRRGNVRNVEQSKKSAPKEADGNDDENDRGKDSSS-DELM---DFPR 210 (381)
T ss_pred HHhhhhhhhhhhhccccc----ccccccC--CCCCCCCcccchhccccCCccCCCccccccccccccc-cccc---cccc
Confidence 999999999988876222 3333332 345666666532221 11 1112222 12344444 5552 2222
Q ss_pred hcccccCCCCC-CCCCcCC-CCCCCCCCchhhhhhhcCCCCCCCCCccccccccCCcccccccCCC-CCCCCCCCcchhh
Q 018247 156 RKRWYGARFSQ-SSSAAAG-TDGGGDENDSEVHRESMGASVGLIGPSERLAWGKGGIRSHTRHGSV-SGSNGKNARNNRL 232 (359)
Q Consensus 156 ~~~~~~~~~~q-~~~~~~~-~~~g~~~~~~e~~~e~~~~~~~l~~~~~~l~wgk~g~RS~~R~gs~-~gs~~~~~r~~r~ 232 (359)
..+.. .+-.+ +++++++ .++.++.+|.|..++...++.+++|+.|..+||.+|+|+.||+|+. -|+-....|+++.
T Consensus 211 ~~~S~-d~~~~~~~~s~as~~~~~~~~a~te~~~~~~~i~r~~v~~~e~~~s~r~~~~~~t~n~~~~~~~k~~~vr~a~~ 289 (381)
T KOG0311|consen 211 EIRSS-DREQTHPSSSGASMNDSNCAGADTEDVRDSSTISRTLVWNRESSESGRGGTRSNTRNGNNKMGRKSLAVRNALE 289 (381)
T ss_pred ccccc-ccccCCCCccccccCCCcccCCCCcccccccccccccccccccchhccCCccccccccccccccchhhhhHHHH
Confidence 22222 22112 3344444 5666677777777999999999999999999999999999999985 3333344588999
Q ss_pred HHHHHHhhhhhcccCceeeEEEEeecCCCCCCCCCCCceeccCCccHHHHHHHHHhhccCCcccEEEEEEeccccCCCCC
Q 018247 233 SKLVDYLQSLEEKDDQLDMHLVLVSLDEQRIPGLQQPYLCCRPTLSVRHLCQYVAHQTALQASEIEIYLVKELHSKINLP 312 (359)
Q Consensus 233 ~klvd~L~~~~e~d~e~di~l~Lvs~d~q~iP~L~~PYL~CrPTlsVkhLcqyvA~q~sl~~eEvEi~v~k~~~~~~~~~ 312 (359)
.++++|++..+...++ |||.+..+..+++|+.+.....-.. ..
T Consensus 290 ~~~~e~~~~~~G~S~~------------------------------------~~~~~~~~~~~~~~~~~~~~~~~d~-~~ 332 (381)
T KOG0311|consen 290 VRLSEYDGSVEGTSNI------------------------------------KVAKKKPLKREEVELLVELIHPLDT-AS 332 (381)
T ss_pred HHhhhhcccccccccc------------------------------------cccccCCcccccccccccccccccc-cc
Confidence 9999999977777777 9999999999999999887632111 00
Q ss_pred CCCCCcccCCCcchhhhccccccccccccc-cCCCcceeehhhhhh
Q 018247 313 SSSNSLMIDPCKDKLQVLNEQETLTGLQTQ-NLGHGFLLLAYQKIL 357 (359)
Q Consensus 313 ~~~~~~~~d~~~d~le~L~~~~tl~~L~~~-~~~~g~L~l~Y~~k~ 357 (359)
-+-..--+.+.+|++..|++.+||+.++.+ |..++.++|-|..|.
T Consensus 333 enn~~iy~a~~~~~~~~Lng~~Tls~v~~df~kvn~~m~l~~~~kk 378 (381)
T KOG0311|consen 333 ENNYTIYIATSKDQFTSLNGDETLSLVKEDFWKVNEPMELSYHEKK 378 (381)
T ss_pred cccceeEeecCCCceEEecccchHHHHhhhhhhcccchhhhhchhc
Confidence 011112567899999999999999999999 999999999998763
No 2
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=99.44 E-value=2.5e-13 Score=133.14 Aligned_cols=65 Identities=28% Similarity=0.596 Sum_probs=55.1
Q ss_pred CCCCccccHHHHHHHHhcCCCCcccccccccC---CCCCCCChHHHHHHHHHCCChHHHHH-HHHhhhHH
Q 018247 1 MECLHRFCRECIDKAMRLGNNECPACRTHCAS---RRSLRDDLNYDALIAALYPDIDKYEE-EELAFQDE 66 (359)
Q Consensus 1 t~CGHtFCR~CI~k~~~~~~~~CPvCR~~~~~---~~~LRpn~~L~~Liekl~P~l~~~e~-~e~af~e~ 66 (359)
++|+|+||++||.+++.. .+.||+|...++. ...++.|.+|++|+.+|+|.+.+-|. +.-+|+++
T Consensus 32 ~eCLHTFCkSCivk~l~~-~~~CP~C~i~ih~t~pl~ni~~DrtlqdiVyKLVPgl~erE~k~~rdFy~~ 100 (331)
T KOG2660|consen 32 TECLHTFCKSCIVKYLEE-SKYCPTCDIVIHKTHPLLNIRSDRTLQDIVYKLVPGLQEREMKRRRDFYKS 100 (331)
T ss_pred HHHHHHHHHHHHHHHHHH-hccCCccceeccCccccccCCcchHHHHHHHHHcchHHHHHHHHHHHHHHh
Confidence 479999999999999984 8899999997653 35789999999999999999998776 45567764
No 3
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=98.44 E-value=1.9e-07 Score=69.59 Aligned_cols=46 Identities=15% Similarity=0.194 Sum_probs=39.2
Q ss_pred CCCCccccHHHHHHHHhcCCCCcccccccccCCCCCCCChHHHHHHHH
Q 018247 1 MECLHRFCRECIDKAMRLGNNECPACRTHCASRRSLRDDLNYDALIAA 48 (359)
Q Consensus 1 t~CGHtFCR~CI~k~~~~~~~~CPvCR~~~~~~~~LRpn~~L~~Liek 48 (359)
++|||+||+.||.+|+.. ...||.|+..+. ...+.+|..|.+.|+.
T Consensus 17 ~~~G~v~~~~~i~~~~~~-~~~cP~~~~~~~-~~~l~~~~~l~~~i~~ 62 (63)
T smart00504 17 LPSGQTYERRAIEKWLLS-HGTDPVTGQPLT-HEDLIPNLALKSAIQE 62 (63)
T ss_pred CCCCCEEeHHHHHHHHHH-CCCCCCCcCCCC-hhhceeCHHHHHHHHh
Confidence 579999999999999975 668999999984 5679999988887763
No 4
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.35 E-value=4e-07 Score=92.41 Aligned_cols=48 Identities=25% Similarity=0.662 Sum_probs=41.3
Q ss_pred CCCCccccHHHHHHHHhcCCCCcccccccccCCCCCCCChHHHHHHHHHC
Q 018247 1 MECLHRFCRECIDKAMRLGNNECPACRTHCASRRSLRDDLNYDALIAALY 50 (359)
Q Consensus 1 t~CGHtFCR~CI~k~~~~~~~~CPvCR~~~~~~~~LRpn~~L~~Liekl~ 50 (359)
++|||+||..||..|+.. ...||+|+..+. ...|+.|..|.+||+.+.
T Consensus 42 tpCgH~FCs~CI~~~l~~-~~~CP~Cr~~~~-~~~Lr~N~~L~~iVe~~~ 89 (397)
T TIGR00599 42 TSCSHTFCSLCIRRCLSN-QPKCPLCRAEDQ-ESKLRSNWLVSEIVESFK 89 (397)
T ss_pred CCCCCchhHHHHHHHHhC-CCCCCCCCCccc-cccCccchHHHHHHHHHH
Confidence 589999999999999974 457999999985 447999999999998664
No 5
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=98.28 E-value=4.8e-07 Score=64.57 Aligned_cols=26 Identities=35% Similarity=1.063 Sum_probs=19.4
Q ss_pred CCCCccccHHHHHHHHhcCC---CCcccc
Q 018247 1 MECLHRFCRECIDKAMRLGN---NECPAC 26 (359)
Q Consensus 1 t~CGHtFCR~CI~k~~~~~~---~~CPvC 26 (359)
++|||+||+.||.++|+... ..||+|
T Consensus 14 l~CGH~FC~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 14 LPCGHSFCRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp -SSSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred cCCcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence 58999999999999998622 479998
No 6
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=98.21 E-value=7.8e-07 Score=88.71 Aligned_cols=47 Identities=30% Similarity=0.704 Sum_probs=41.2
Q ss_pred CCCCccccHHHHHHHHhcCCCCcccccccccCCCCCCCChHHHHHHHHH
Q 018247 1 MECLHRFCRECIDKAMRLGNNECPACRTHCASRRSLRDDLNYDALIAAL 49 (359)
Q Consensus 1 t~CGHtFCR~CI~k~~~~~~~~CPvCR~~~~~~~~LRpn~~L~~Liekl 49 (359)
|+|+|+||.-||.+++. ....||.|..++. ...||.|+.|.+|++.+
T Consensus 39 tpCsHtfCSlCIR~~L~-~~p~CP~C~~~~~-Es~Lr~n~il~Eiv~S~ 85 (442)
T KOG0287|consen 39 TPCSHTFCSLCIRKFLS-YKPQCPTCCVTVT-ESDLRNNRILDEIVKSL 85 (442)
T ss_pred ccccchHHHHHHHHHhc-cCCCCCceecccc-hhhhhhhhHHHHHHHHH
Confidence 68999999999999998 4678999999985 55799999999998764
No 7
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=98.12 E-value=1.5e-06 Score=60.21 Aligned_cols=25 Identities=48% Similarity=1.221 Sum_probs=21.8
Q ss_pred CCCCccccHHHHHHHHhcCCCCcccc
Q 018247 1 MECLHRFCRECIDKAMRLGNNECPAC 26 (359)
Q Consensus 1 t~CGHtFCR~CI~k~~~~~~~~CPvC 26 (359)
++|||+||+.||.+|+.. ...||+|
T Consensus 15 ~~CGH~fC~~C~~~~~~~-~~~CP~C 39 (39)
T PF13923_consen 15 TPCGHSFCKECIEKYLEK-NPKCPVC 39 (39)
T ss_dssp CTTSEEEEHHHHHHHHHC-TSB-TTT
T ss_pred CCCCCchhHHHHHHHHHC-cCCCcCC
Confidence 589999999999999986 6889998
No 8
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=98.11 E-value=8.7e-07 Score=62.68 Aligned_cols=26 Identities=46% Similarity=1.077 Sum_probs=22.2
Q ss_pred CCCCccccHHHHHHHHhcCCCCccccc
Q 018247 1 MECLHRFCRECIDKAMRLGNNECPACR 27 (359)
Q Consensus 1 t~CGHtFCR~CI~k~~~~~~~~CPvCR 27 (359)
++|||.||..||.+|+.. ...||+||
T Consensus 19 l~C~H~fh~~Ci~~~~~~-~~~CP~CR 44 (44)
T PF13639_consen 19 LPCGHVFHRSCIKEWLKR-NNSCPVCR 44 (44)
T ss_dssp ETTSEEEEHHHHHHHHHH-SSB-TTTH
T ss_pred ccCCCeeCHHHHHHHHHh-CCcCCccC
Confidence 479999999999999984 57999997
No 9
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=98.06 E-value=2.5e-06 Score=59.09 Aligned_cols=26 Identities=42% Similarity=1.174 Sum_probs=22.9
Q ss_pred CCCCccccHHHHHHHHh-cCCCCcccc
Q 018247 1 MECLHRFCRECIDKAMR-LGNNECPAC 26 (359)
Q Consensus 1 t~CGHtFCR~CI~k~~~-~~~~~CPvC 26 (359)
++|||+||..||.+|+. .....||.|
T Consensus 15 ~~C~H~fC~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 15 LPCGHSFCRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp TTTSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred ecCCCcchHHHHHHHHHhcCCccCCcC
Confidence 58999999999999998 456779998
No 10
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.05 E-value=3.6e-06 Score=74.70 Aligned_cols=46 Identities=33% Similarity=0.801 Sum_probs=38.4
Q ss_pred CCCCccccHHHHHHHHhcCCCCcccccccccCCCCCCCChHHHHHHHHHC
Q 018247 1 MECLHRFCRECIDKAMRLGNNECPACRTHCASRRSLRDDLNYDALIAALY 50 (359)
Q Consensus 1 t~CGHtFCR~CI~k~~~~~~~~CPvCR~~~~~~~~LRpn~~L~~Liekl~ 50 (359)
++|||+||+.||..+|. ....||.||. ... .+++|..+.+++..+-
T Consensus 29 l~C~H~~c~~C~~~~~~-~~~~Cp~cr~-~~~--~~~~n~~l~~~~~~~~ 74 (386)
T KOG2177|consen 29 LPCGHNFCRACLTRSWE-GPLSCPVCRP-PSR--NLRPNVLLANLVERLR 74 (386)
T ss_pred ccccchHhHHHHHHhcC-CCcCCcccCC-chh--ccCccHHHHHHHHHHH
Confidence 47999999999999998 6678999996 322 7889999998887764
No 11
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=98.03 E-value=3e-06 Score=83.27 Aligned_cols=47 Identities=26% Similarity=0.560 Sum_probs=36.9
Q ss_pred CCCCccccHHHHHHHHhcCCCCcccccccccCCCCCCCChHHHHHHHHH
Q 018247 1 MECLHRFCRECIDKAMRLGNNECPACRTHCASRRSLRDDLNYDALIAAL 49 (359)
Q Consensus 1 t~CGHtFCR~CI~k~~~~~~~~CPvCR~~~~~~~~LRpn~~L~~Liekl 49 (359)
|+|||+||.-||..++. ....||+||..+.. .-||-+..+..+++-+
T Consensus 41 TtCgHtFCslCIR~hL~-~qp~CP~Cr~~~~e-srlr~~s~~~ei~es~ 87 (391)
T COG5432 41 TTCGHTFCSLCIRRHLG-TQPFCPVCREDPCE-SRLRGSSGSREINESH 87 (391)
T ss_pred cccccchhHHHHHHHhc-CCCCCccccccHHh-hhcccchhHHHHHHhh
Confidence 68999999999999998 46789999998643 3467777776666543
No 12
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=98.00 E-value=4.4e-06 Score=65.58 Aligned_cols=48 Identities=15% Similarity=0.207 Sum_probs=38.1
Q ss_pred CCCCccccHHHHHHHHhcCCCCcccccccccCCCCCCCChHHHHHHHHH
Q 018247 1 MECLHRFCRECIDKAMRLGNNECPACRTHCASRRSLRDDLNYDALIAAL 49 (359)
Q Consensus 1 t~CGHtFCR~CI~k~~~~~~~~CPvCR~~~~~~~~LRpn~~L~~Liekl 49 (359)
++|||+|++.||.+|+......||.|+..+. ...|.+|..|.+.|+.+
T Consensus 20 ~~~G~tyer~~I~~~l~~~~~~~P~t~~~l~-~~~l~pn~~Lk~~I~~~ 67 (73)
T PF04564_consen 20 LPSGHTYERSAIERWLEQNGGTDPFTRQPLS-ESDLIPNRALKSAIEEW 67 (73)
T ss_dssp ETTSEEEEHHHHHHHHCTTSSB-TTT-SB-S-GGGSEE-HHHHHHHHHH
T ss_pred CCcCCEEcHHHHHHHHHcCCCCCCCCCCcCC-cccceECHHHHHHHHHH
Confidence 4799999999999999865789999999985 45799999999988765
No 13
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.97 E-value=5.1e-06 Score=82.02 Aligned_cols=30 Identities=33% Similarity=0.846 Sum_probs=26.6
Q ss_pred CCCccccHHHHHHHHhcCCCCccccccccc
Q 018247 2 ECLHRFCRECIDKAMRLGNNECPACRTHCA 31 (359)
Q Consensus 2 ~CGHtFCR~CI~k~~~~~~~~CPvCR~~~~ 31 (359)
+|||+||..||...|..+...||.|+..+.
T Consensus 25 ~CGH~~C~sCv~~l~~~~~~~CP~C~~~lr 54 (309)
T TIGR00570 25 VCGHTLCESCVDLLFVRGSGSCPECDTPLR 54 (309)
T ss_pred CCCCcccHHHHHHHhcCCCCCCCCCCCccc
Confidence 699999999999988766678999999874
No 14
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=97.96 E-value=6e-06 Score=55.85 Aligned_cols=28 Identities=57% Similarity=1.234 Sum_probs=24.5
Q ss_pred CCCccccHHHHHHHHhcCCCCccccccc
Q 018247 2 ECLHRFCRECIDKAMRLGNNECPACRTH 29 (359)
Q Consensus 2 ~CGHtFCR~CI~k~~~~~~~~CPvCR~~ 29 (359)
+|||.||..|+..|+......||+|+..
T Consensus 17 ~C~H~~c~~C~~~~~~~~~~~Cp~C~~~ 44 (45)
T cd00162 17 PCGHVFCRSCIDKWLKSGKNTCPLCRTP 44 (45)
T ss_pred CCCChhcHHHHHHHHHhCcCCCCCCCCc
Confidence 5999999999999987546789999975
No 15
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=97.92 E-value=4.7e-06 Score=77.52 Aligned_cols=31 Identities=32% Similarity=0.761 Sum_probs=25.6
Q ss_pred CCCCccccHHHHHHHHhc---------------CCCCccccccccc
Q 018247 1 MECLHRFCRECIDKAMRL---------------GNNECPACRTHCA 31 (359)
Q Consensus 1 t~CGHtFCR~CI~k~~~~---------------~~~~CPvCR~~~~ 31 (359)
|+|||.||..||.+|+.. ....||+|+..+.
T Consensus 34 T~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is 79 (193)
T PLN03208 34 TLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVS 79 (193)
T ss_pred cCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCC
Confidence 589999999999999742 1357999999884
No 16
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=97.89 E-value=3.7e-06 Score=65.92 Aligned_cols=41 Identities=32% Similarity=0.774 Sum_probs=23.8
Q ss_pred CCCccccHHHHHHHHhcCCCCcccccccccCCCCCCCChHHHHHH
Q 018247 2 ECLHRFCRECIDKAMRLGNNECPACRTHCASRRSLRDDLNYDALI 46 (359)
Q Consensus 2 ~CGHtFCR~CI~k~~~~~~~~CPvCR~~~~~~~~LRpn~~L~~Li 46 (359)
.|.|.||..||...+. ..||+|+.+-. ..+++.|++|++||
T Consensus 25 ~CeH~fCs~Ci~~~~~---~~CPvC~~Paw-~qD~~~NrqLd~~i 65 (65)
T PF14835_consen 25 GCEHIFCSSCIRDCIG---SECPVCHTPAW-IQDIQINRQLDSMI 65 (65)
T ss_dssp SSS--B-TTTGGGGTT---TB-SSS--B-S--SS----HHHHHHH
T ss_pred cCccHHHHHHhHHhcC---CCCCCcCChHH-HHHHHhhhhhhccC
Confidence 6999999999988654 35999999853 56899999999886
No 17
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=97.85 E-value=8.8e-06 Score=59.12 Aligned_cols=30 Identities=33% Similarity=1.001 Sum_probs=26.1
Q ss_pred CCCCcc-ccHHHHHHHHhcCCCCccccccccc
Q 018247 1 MECLHR-FCRECIDKAMRLGNNECPACRTHCA 31 (359)
Q Consensus 1 t~CGHt-FCR~CI~k~~~~~~~~CPvCR~~~~ 31 (359)
++|||. ||..|+.+++. ....||+||.++.
T Consensus 18 ~pCgH~~~C~~C~~~~~~-~~~~CP~Cr~~i~ 48 (50)
T PF13920_consen 18 LPCGHLCFCEECAERLLK-RKKKCPICRQPIE 48 (50)
T ss_dssp ETTCEEEEEHHHHHHHHH-TTSBBTTTTBB-S
T ss_pred eCCCChHHHHHHhHHhcc-cCCCCCcCChhhc
Confidence 489999 99999999998 6788999999874
No 18
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=97.77 E-value=1.3e-05 Score=57.07 Aligned_cols=27 Identities=37% Similarity=0.923 Sum_probs=23.1
Q ss_pred CCCCccccHHHHHHHHhcCCCCcccccc
Q 018247 1 MECLHRFCRECIDKAMRLGNNECPACRT 28 (359)
Q Consensus 1 t~CGHtFCR~CI~k~~~~~~~~CPvCR~ 28 (359)
+.|||+||..||.... .....||+|++
T Consensus 18 ~~CgH~~C~~C~~~~~-~~~~~CP~C~k 44 (44)
T PF14634_consen 18 TSCGHIFCEKCLKKLK-GKSVKCPICRK 44 (44)
T ss_pred cccCCHHHHHHHHhhc-CCCCCCcCCCC
Confidence 5899999999999987 34578999985
No 19
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=97.71 E-value=1.9e-05 Score=51.46 Aligned_cols=26 Identities=54% Similarity=1.289 Sum_probs=22.4
Q ss_pred CCCCccccHHHHHHHHhcCCCCcccc
Q 018247 1 MECLHRFCRECIDKAMRLGNNECPAC 26 (359)
Q Consensus 1 t~CGHtFCR~CI~k~~~~~~~~CPvC 26 (359)
++|||.||..||..|+......||+|
T Consensus 14 ~~C~H~~c~~C~~~~~~~~~~~CP~C 39 (39)
T smart00184 14 LPCGHTFCRSCIRKWLKSGNNTCPIC 39 (39)
T ss_pred ecCCChHHHHHHHHHHHhCcCCCCCC
Confidence 47999999999999987445679988
No 20
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.54 E-value=3.3e-05 Score=73.50 Aligned_cols=31 Identities=29% Similarity=0.833 Sum_probs=26.8
Q ss_pred CCCCccccHHHHHHHHhc--CCCCccccccccc
Q 018247 1 MECLHRFCRECIDKAMRL--GNNECPACRTHCA 31 (359)
Q Consensus 1 t~CGHtFCR~CI~k~~~~--~~~~CPvCR~~~~ 31 (359)
|.|||-||--||++|+.. ....||+|+..+.
T Consensus 63 TlCGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs 95 (230)
T KOG0823|consen 63 TLCGHLFCWPCLYQWLQTRPNSKECPVCKAEVS 95 (230)
T ss_pred eecccceehHHHHHHHhhcCCCeeCCccccccc
Confidence 579999999999999976 3567999999874
No 21
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=97.25 E-value=0.00014 Score=52.64 Aligned_cols=24 Identities=33% Similarity=0.994 Sum_probs=15.8
Q ss_pred CCCCccccHHHHHHHHhcC---CCCcc
Q 018247 1 MECLHRFCRECIDKAMRLG---NNECP 24 (359)
Q Consensus 1 t~CGHtFCR~CI~k~~~~~---~~~CP 24 (359)
++|||+||++||.+.+..+ ...||
T Consensus 17 L~CGH~~c~~cl~~l~~~~~~~~~kCP 43 (43)
T PF13445_consen 17 LPCGHVFCKDCLQKLSKKSDRNRFKCP 43 (43)
T ss_dssp -SSS-EEEHHHHHHHHHH-S-S-B--T
T ss_pred EeCccHHHHHHHHHHHhcCCCCeeeCc
Confidence 5799999999999988742 45677
No 22
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.16 E-value=0.00019 Score=74.78 Aligned_cols=33 Identities=30% Similarity=0.725 Sum_probs=27.9
Q ss_pred CCCCccccHHHHHHHHhcC----CCCcccccccccCC
Q 018247 1 MECLHRFCRECIDKAMRLG----NNECPACRTHCASR 33 (359)
Q Consensus 1 t~CGHtFCR~CI~k~~~~~----~~~CPvCR~~~~~~ 33 (359)
|.|||.||-.||.++|... ...||+|+..+..+
T Consensus 202 t~CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~k 238 (513)
T KOG2164|consen 202 TNCGHIFCGPCILQYWNYSAIKGPCSCPICRSTITLK 238 (513)
T ss_pred cccCceeeHHHHHHHHhhhcccCCccCCchhhhcccc
Confidence 5799999999999999753 46899999988653
No 23
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=97.11 E-value=0.0003 Score=55.53 Aligned_cols=25 Identities=44% Similarity=0.974 Sum_probs=21.7
Q ss_pred CCCccccHHHHHHHHhcCCCCccccc
Q 018247 2 ECLHRFCRECIDKAMRLGNNECPACR 27 (359)
Q Consensus 2 ~CGHtFCR~CI~k~~~~~~~~CPvCR 27 (359)
+|||.|...||.+|+. ....||+||
T Consensus 49 ~C~H~FH~~Ci~~Wl~-~~~~CP~CR 73 (73)
T PF12678_consen 49 PCGHIFHFHCISQWLK-QNNTCPLCR 73 (73)
T ss_dssp TTSEEEEHHHHHHHHT-TSSB-TTSS
T ss_pred ccCCCEEHHHHHHHHh-cCCcCCCCC
Confidence 6999999999999997 456999997
No 24
>PF11816 DUF3337: Domain of unknown function (DUF3337); InterPro: IPR021772 This family of proteins are functionally uncharacterised. This family is only found in eukaryotes. This presumed domain is typically between 285 to 342 amino acids in length.
Probab=97.03 E-value=0.0012 Score=65.36 Aligned_cols=84 Identities=25% Similarity=0.290 Sum_probs=67.6
Q ss_pred eeEEEEeecCCCCCCCCCCC-----------------ceeccCCccHHHHHHHHHhhc--------------c-CCcccE
Q 018247 250 DMHLVLVSLDEQRIPGLQQP-----------------YLCCRPTLSVRHLCQYVAHQT--------------A-LQASEI 297 (359)
Q Consensus 250 di~l~Lvs~d~q~iP~L~~P-----------------YL~CrPTlsVkhLcqyvA~q~--------------s-l~~eEv 297 (359)
-|-|+|+|.+....|.+..- =|..---|-|+-++.|||..+ . .+.|-|
T Consensus 214 Ki~F~L~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rL~A~~mLrvkKI~~yV~ek~~~~~~~~~~~~~~~~~~p~e~l 293 (331)
T PF11816_consen 214 KISFVLQPWDGSLPPNLKPDGKSQKKIKLPPLSEGNSRLNAPRMLRVKKILEYVAEKLEKTPESKTPEMKPKKLKPEEWL 293 (331)
T ss_pred eeEEEEeecCCCCccccCCCccccccccccccccccceecccchhhhHHHHHHHHHHhccCccccCccccccCCCCCceE
Confidence 59999999997777777666 588888999999999999999 1 245566
Q ss_pred EEEEEeccccCCCCCCCCCCcccCCCcchhhhccccccccccccc-cCCCcceeehhhhhh
Q 018247 298 EIYLVKELHSKINLPSSSNSLMIDPCKDKLQVLNEQETLTGLQTQ-NLGHGFLLLAYQKIL 357 (359)
Q Consensus 298 Ei~v~k~~~~~~~~~~~~~~~~~d~~~d~le~L~~~~tl~~L~~~-~~~~g~L~l~Y~~k~ 357 (359)
|||+.. |+|--+-||+-+++- |-..|+|+|-||+|.
T Consensus 294 El~C~g------------------------qvL~~~mtLaTVr~~~WK~~~di~L~YR~k~ 330 (331)
T PF11816_consen 294 ELLCNG------------------------QVLPPDMTLATVRTFIWKSSGDIVLHYRRKG 330 (331)
T ss_pred EEEeCC------------------------eEcCCcCCHHHHHHhhccCCCeEEEEEEecC
Confidence 776654 233344599999999 999999999999984
No 25
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.95 E-value=0.00052 Score=70.17 Aligned_cols=52 Identities=29% Similarity=0.600 Sum_probs=38.2
Q ss_pred CCCCccccHHHHHHHHhcCCCCcccccccccCCCCC----CCChHHHHHHHHHCCCh
Q 018247 1 MECLHRFCRECIDKAMRLGNNECPACRTHCASRRSL----RDDLNYDALIAALYPDI 53 (359)
Q Consensus 1 t~CGHtFCR~CI~k~~~~~~~~CPvCR~~~~~~~~L----Rpn~~L~~Liekl~P~l 53 (359)
+||||+||..||.+.++ ....||.||..+.....+ -+++.+..++.++++..
T Consensus 100 tpcghs~c~~Cl~r~ld-~~~~cp~Cr~~l~e~~~~~~~~~~~r~~~~li~~F~~~~ 155 (398)
T KOG4159|consen 100 TPCGHSFCLECLDRSLD-QETECPLCRDELVELPALEQALSLNRLLCKLITKFLEGS 155 (398)
T ss_pred ccccccccHHHHHHHhc-cCCCCcccccccccchHHHHHHHHHHHHHHHHHHhhhhh
Confidence 58999999999999887 678899999988532211 12445556777777764
No 26
>KOG4739 consensus Uncharacterized protein involved in synaptonemal complex formation [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.31 E-value=0.0053 Score=58.90 Aligned_cols=47 Identities=21% Similarity=0.585 Sum_probs=33.6
Q ss_pred CCCCccccHHHHHHHHhcCCCCcccccccccCCCCCCCChHHHHHHHHHCCCh
Q 018247 1 MECLHRFCRECIDKAMRLGNNECPACRTHCASRRSLRDDLNYDALIAALYPDI 53 (359)
Q Consensus 1 t~CGHtFCR~CI~k~~~~~~~~CPvCR~~~~~~~~LRpn~~L~~Liekl~P~l 53 (359)
|.|+|.||-.|...... ..||.|+..+. .++.|..|..-|..+|-++
T Consensus 21 TaC~HvfC~~C~k~~~~---~~C~lCkk~ir---~i~l~~slp~~ik~~F~d~ 67 (233)
T KOG4739|consen 21 TACRHVFCEPCLKASSP---DVCPLCKKSIR---IIQLNRSLPTDIKSYFADP 67 (233)
T ss_pred eechhhhhhhhcccCCc---cccccccceee---eeecccccchhHHHHccCc
Confidence 57999999999776532 38999999852 3455555666666666665
No 27
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=96.20 E-value=0.0029 Score=52.22 Aligned_cols=30 Identities=33% Similarity=0.752 Sum_probs=26.0
Q ss_pred CCCccccHHHHHHHHhcC--CCCccccccccc
Q 018247 2 ECLHRFCRECIDKAMRLG--NNECPACRTHCA 31 (359)
Q Consensus 2 ~CGHtFCR~CI~k~~~~~--~~~CPvCR~~~~ 31 (359)
.|+|.|-..||.+|+..+ ...||+||..+.
T Consensus 51 ~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w~ 82 (85)
T PF12861_consen 51 KCSHNFHMHCILKWLSTQSSKGQCPMCRQPWK 82 (85)
T ss_pred cCccHHHHHHHHHHHccccCCCCCCCcCCeee
Confidence 599999999999999863 468999999863
No 28
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.64 E-value=0.0046 Score=65.01 Aligned_cols=29 Identities=31% Similarity=0.762 Sum_probs=25.7
Q ss_pred CCCCccccHHHHHHHHhcCCCCcccccccc
Q 018247 1 MECLHRFCRECIDKAMRLGNNECPACRTHC 30 (359)
Q Consensus 1 t~CGHtFCR~CI~k~~~~~~~~CPvCR~~~ 30 (359)
++|||.||..|+..|++ ....||.||..+
T Consensus 312 L~C~Hifh~~CL~~W~e-r~qtCP~CR~~~ 340 (543)
T KOG0802|consen 312 LPCGHIFHDSCLRSWFE-RQQTCPTCRTVL 340 (543)
T ss_pred eecccchHHHHHHHHHH-HhCcCCcchhhh
Confidence 48999999999999998 477899999954
No 29
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=95.51 E-value=0.013 Score=58.41 Aligned_cols=42 Identities=43% Similarity=0.839 Sum_probs=30.5
Q ss_pred CCCccccHHHHHHHHhcCCCCcccccccccCCCCCCCChHHHHHHHHHCCChHHH
Q 018247 2 ECLHRFCRECIDKAMRLGNNECPACRTHCASRRSLRDDLNYDALIAALYPDIDKY 56 (359)
Q Consensus 2 ~CGHtFCR~CI~k~~~~~~~~CPvCR~~~~~~~~LRpn~~L~~Liekl~P~l~~~ 56 (359)
-|+|.||..||...+-+.-+.||.|...= -|++.|.|++++.
T Consensus 292 cC~~~fc~eci~~al~dsDf~CpnC~rkd-------------vlld~l~pD~dk~ 333 (427)
T COG5222 292 CCGHTFCDECIGTALLDSDFKCPNCSRKD-------------VLLDGLTPDIDKK 333 (427)
T ss_pred cccchHHHHHHhhhhhhccccCCCccccc-------------chhhccCccHHHH
Confidence 48999999999987654567899997631 1445567776553
No 30
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=95.34 E-value=0.01 Score=60.41 Aligned_cols=46 Identities=24% Similarity=0.577 Sum_probs=32.9
Q ss_pred CCCCccccHHHHHHHHhcCCCCcccccccccCCCCCCCChHHHHHHH
Q 018247 1 MECLHRFCRECIDKAMRLGNNECPACRTHCASRRSLRDDLNYDALIA 47 (359)
Q Consensus 1 t~CGHtFCR~CI~k~~~~~~~~CPvCR~~~~~~~~LRpn~~L~~Lie 47 (359)
+.|||.||..||..|... ...||.|+........+-.+..+...+.
T Consensus 38 ~~cgh~fC~~C~~~~~~~-~~~cp~~~~~~~~~~~~~~~~~~~~~~~ 83 (391)
T KOG0297|consen 38 TTCGHRFCAGCLLESLSN-HQKCPVCRQELTQAEELPVPRALRRELL 83 (391)
T ss_pred CCCCCcccccccchhhcc-CcCCcccccccchhhccCchHHHHHHHH
Confidence 389999999999999884 6789999988755443433333444443
No 31
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.18 E-value=0.0099 Score=59.04 Aligned_cols=32 Identities=31% Similarity=0.823 Sum_probs=26.4
Q ss_pred CCCCccccHHHHHHHHhcCCCCcccccccccC
Q 018247 1 MECLHRFCRECIDKAMRLGNNECPACRTHCAS 32 (359)
Q Consensus 1 t~CGHtFCR~CI~k~~~~~~~~CPvCR~~~~~ 32 (359)
++|+|-||.-||......+...||+||.+|..
T Consensus 23 l~C~HkFCyiCiKGsy~ndk~~CavCR~pids 54 (324)
T KOG0824|consen 23 LYCFHKFCYICIKGSYKNDKKTCAVCRFPIDS 54 (324)
T ss_pred ccccchhhhhhhcchhhcCCCCCceecCCCCc
Confidence 57999999999998544367789999999853
No 32
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=94.70 E-value=0.014 Score=61.99 Aligned_cols=31 Identities=35% Similarity=0.894 Sum_probs=24.9
Q ss_pred CCCCccccHHHHHHHHhc----CCCCccccccccc
Q 018247 1 MECLHRFCRECIDKAMRL----GNNECPACRTHCA 31 (359)
Q Consensus 1 t~CGHtFCR~CI~k~~~~----~~~~CPvCR~~~~ 31 (359)
+.|-|.|||-||..+... .+-.||+|.+.++
T Consensus 552 s~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~Ls 586 (791)
T KOG1002|consen 552 SSCHHKFCRLCIKEYVESFMENNNVTCPVCHIGLS 586 (791)
T ss_pred hhhhHHHHHHHHHHHHHhhhcccCCCCcccccccc
Confidence 369999999999887643 3467999999864
No 33
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.28 E-value=0.019 Score=57.90 Aligned_cols=29 Identities=38% Similarity=0.904 Sum_probs=24.2
Q ss_pred CCCccccHHHHHHHHhc-C-----CCCcccccccc
Q 018247 2 ECLHRFCRECIDKAMRL-G-----NNECPACRTHC 30 (359)
Q Consensus 2 ~CGHtFCR~CI~k~~~~-~-----~~~CPvCR~~~ 30 (359)
+|-|.||..||.+|-.. + .+.||.||...
T Consensus 186 nC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s 220 (344)
T KOG1039|consen 186 NCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPS 220 (344)
T ss_pred CcchhhhhcHhHhhhhhhccccccccCCCcccCcc
Confidence 59999999999999732 2 47899999974
No 34
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=94.27 E-value=0.02 Score=43.60 Aligned_cols=26 Identities=35% Similarity=0.842 Sum_probs=17.4
Q ss_pred CCCccccHHHHHHHHhc-CCCCccc--cc
Q 018247 2 ECLHRFCRECIDKAMRL-GNNECPA--CR 27 (359)
Q Consensus 2 ~CGHtFCR~CI~k~~~~-~~~~CPv--CR 27 (359)
.|||+|.+..|..++.. ....||+ |.
T Consensus 29 ~C~H~fek~aI~~~i~~~~~~~CPv~GC~ 57 (57)
T PF11789_consen 29 KCGHTFEKEAILQYIQRNGSKRCPVAGCN 57 (57)
T ss_dssp SS--EEEHHHHHHHCTTTS-EE-SCCC-S
T ss_pred CCCCeecHHHHHHHHHhcCCCCCCCCCCC
Confidence 69999999999999943 4567998 63
No 35
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=94.13 E-value=0.022 Score=62.64 Aligned_cols=30 Identities=30% Similarity=0.628 Sum_probs=25.9
Q ss_pred CCCCccccHHHHHHHHhcCCCCccccccccc
Q 018247 1 MECLHRFCRECIDKAMRLGNNECPACRTHCA 31 (359)
Q Consensus 1 t~CGHtFCR~CI~k~~~~~~~~CPvCR~~~~ 31 (359)
++|+|-||..||..|.+ -...||+||..|.
T Consensus 142 k~c~H~FC~~Ci~sWsR-~aqTCPiDR~EF~ 171 (1134)
T KOG0825|consen 142 KHTAHYFCEECVGSWSR-CAQTCPVDRGEFG 171 (1134)
T ss_pred cccccccHHHHhhhhhh-hcccCchhhhhhh
Confidence 47999999999999987 3568999999874
No 36
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.98 E-value=0.04 Score=52.93 Aligned_cols=48 Identities=25% Similarity=0.576 Sum_probs=35.9
Q ss_pred CCCccccHHHHHHHHhcCCCCccccccc--ccCC--CCCCCChHHHHHHHHH
Q 018247 2 ECLHRFCRECIDKAMRLGNNECPACRTH--CASR--RSLRDDLNYDALIAAL 49 (359)
Q Consensus 2 ~CGHtFCR~CI~k~~~~~~~~CPvCR~~--~~~~--~~LRpn~~L~~Liekl 49 (359)
.|||+||..|+.+......-.||.||.. +... ..|..|+.+-+++..+
T Consensus 26 ~c~h~~c~~c~~~l~~~~~i~cpfcR~~~~~~~~~~~~l~kNf~ll~~~~~~ 77 (296)
T KOG4185|consen 26 KCGHTICQNCASKLLGNSRILCPFCRETTEIPDGDVKSLQKNFALLQAIEHM 77 (296)
T ss_pred ccCceehHhHHHHHhcCceeeccCCCCcccCCchhHhhhhhhHHHHHHHHHH
Confidence 5999999999999887555678999997 3211 4567777777666653
No 37
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.82 E-value=0.037 Score=55.94 Aligned_cols=31 Identities=29% Similarity=0.749 Sum_probs=26.5
Q ss_pred CCCCccccHHHHHHHHhcCCCCccccccccc
Q 018247 1 MECLHRFCRECIDKAMRLGNNECPACRTHCA 31 (359)
Q Consensus 1 t~CGHtFCR~CI~k~~~~~~~~CPvCR~~~~ 31 (359)
+||.|.|=..||..|+......||+|+....
T Consensus 248 LPC~H~FH~~CIDpWL~~~r~~CPvCK~di~ 278 (348)
T KOG4628|consen 248 LPCSHKFHVNCIDPWLTQTRTFCPVCKRDIR 278 (348)
T ss_pred ecCCCchhhccchhhHhhcCccCCCCCCcCC
Confidence 5899999999999999755567999999753
No 38
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=92.69 E-value=0.05 Score=56.21 Aligned_cols=32 Identities=25% Similarity=0.649 Sum_probs=27.1
Q ss_pred CCCccccHHHHHHHHhc-CCCCcccccccccCC
Q 018247 2 ECLHRFCRECIDKAMRL-GNNECPACRTHCASR 33 (359)
Q Consensus 2 ~CGHtFCR~CI~k~~~~-~~~~CPvCR~~~~~~ 33 (359)
||||-.|-.|+..|... +...||.||-.+...
T Consensus 386 PCGHLlCt~CLa~WQ~sd~gq~CPFCRcEIKGt 418 (563)
T KOG1785|consen 386 PCGHLLCTSCLAAWQDSDEGQTCPFCRCEIKGT 418 (563)
T ss_pred cccchHHHHHHHhhcccCCCCCCCceeeEeccc
Confidence 89999999999999854 477899999987543
No 39
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=92.05 E-value=0.11 Score=38.70 Aligned_cols=29 Identities=31% Similarity=0.816 Sum_probs=17.1
Q ss_pred CCCccccHHHHHHHHhcCCCCcccccccc
Q 018247 2 ECLHRFCRECIDKAMRLGNNECPACRTHC 30 (359)
Q Consensus 2 ~CGHtFCR~CI~k~~~~~~~~CPvCR~~~ 30 (359)
+||+..|+.|-.+-...+...||.||+++
T Consensus 19 ~Cgf~IC~~C~~~i~~~~~g~CPgCr~~Y 47 (48)
T PF14570_consen 19 ECGFQICRFCYHDILENEGGRCPGCREPY 47 (48)
T ss_dssp TTS----HHHHHHHTTSS-SB-TTT--B-
T ss_pred cCCCcHHHHHHHHHHhccCCCCCCCCCCC
Confidence 68999999999888765678899999875
No 40
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=91.98 E-value=0.097 Score=53.72 Aligned_cols=29 Identities=24% Similarity=0.697 Sum_probs=25.9
Q ss_pred CCCCccccHHHHHHHHhcCCCCcccccccc
Q 018247 1 MECLHRFCRECIDKAMRLGNNECPACRTHC 30 (359)
Q Consensus 1 t~CGHtFCR~CI~k~~~~~~~~CPvCR~~~ 30 (359)
+||||-|=-.|+..|++ ....||.||.++
T Consensus 316 LpCGHilHl~CLknW~E-RqQTCPICr~p~ 344 (491)
T COG5243 316 LPCGHILHLHCLKNWLE-RQQTCPICRRPV 344 (491)
T ss_pred ccccceeeHHHHHHHHH-hccCCCcccCcc
Confidence 58999999999999997 467899999984
No 41
>PF04641 Rtf2: Rtf2 RING-finger
Probab=90.70 E-value=0.12 Score=49.55 Aligned_cols=31 Identities=16% Similarity=0.485 Sum_probs=25.5
Q ss_pred CCCccccHHHHHHHHhcCCCCcccccccccCCC
Q 018247 2 ECLHRFCRECIDKAMRLGNNECPACRTHCASRR 34 (359)
Q Consensus 2 ~CGHtFCR~CI~k~~~~~~~~CPvCR~~~~~~~ 34 (359)
+|||+||..||...- ....||+|..+|....
T Consensus 134 ~cG~V~s~~alke~k--~~~~Cp~c~~~f~~~D 164 (260)
T PF04641_consen 134 PCGCVFSEKALKELK--KSKKCPVCGKPFTEED 164 (260)
T ss_pred CCCCEeeHHHHHhhc--ccccccccCCccccCC
Confidence 799999999999973 2456999999997443
No 42
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=90.43 E-value=0.088 Score=43.16 Aligned_cols=29 Identities=38% Similarity=0.845 Sum_probs=24.5
Q ss_pred CCccccHHHHHHHHhcC--CCCccccccccc
Q 018247 3 CLHRFCRECIDKAMRLG--NNECPACRTHCA 31 (359)
Q Consensus 3 CGHtFCR~CI~k~~~~~--~~~CPvCR~~~~ 31 (359)
|.|.|=.-||.+|+... ...||+||+.+.
T Consensus 51 C~h~fh~hCI~~wl~~~tsq~~CPmcRq~~~ 81 (84)
T KOG1493|consen 51 CLHAFHAHCILKWLNTPTSQGQCPMCRQTWQ 81 (84)
T ss_pred HHHHHHHHHHHHHhcCccccccCCcchheeE
Confidence 88999999999998752 457999999863
No 43
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=89.49 E-value=0.14 Score=51.58 Aligned_cols=27 Identities=33% Similarity=0.936 Sum_probs=21.7
Q ss_pred CCCCccccHHHHHHHHhcCCCCcccccccc
Q 018247 1 MECLHRFCRECIDKAMRLGNNECPACRTHC 30 (359)
Q Consensus 1 t~CGHtFCR~CI~k~~~~~~~~CPvCR~~~ 30 (359)
|+|-|.||.+|.... ..+.||.|-..+
T Consensus 107 IPCkHvFCl~CAr~~---~dK~Cp~C~d~V 133 (389)
T KOG2932|consen 107 IPCKHVFCLECARSD---SDKICPLCDDRV 133 (389)
T ss_pred cccchhhhhhhhhcC---ccccCcCcccHH
Confidence 699999999997654 357899998754
No 44
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=88.86 E-value=0.16 Score=55.50 Aligned_cols=31 Identities=39% Similarity=0.949 Sum_probs=26.0
Q ss_pred CCCCccccHHHHHHHHhcC-CCCccccccccc
Q 018247 1 MECLHRFCRECIDKAMRLG-NNECPACRTHCA 31 (359)
Q Consensus 1 t~CGHtFCR~CI~k~~~~~-~~~CPvCR~~~~ 31 (359)
+.|||.||..|+.+.+... ...||.|+..+.
T Consensus 469 t~c~h~~c~~c~~~~i~~~~~~~~~~cr~~l~ 500 (674)
T KOG1001|consen 469 TRCGHDFCVECLKKSIQQSENAPCPLCRNVLK 500 (674)
T ss_pred ecccchHHHHHHHhccccccCCCCcHHHHHHH
Confidence 5799999999999998753 347999999764
No 45
>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones]
Probab=88.02 E-value=0.38 Score=47.85 Aligned_cols=29 Identities=41% Similarity=1.084 Sum_probs=25.8
Q ss_pred CCCccccHHHHHHHHhcCCCCcccccccc
Q 018247 2 ECLHRFCRECIDKAMRLGNNECPACRTHC 30 (359)
Q Consensus 2 ~CGHtFCR~CI~k~~~~~~~~CPvCR~~~ 30 (359)
+|||+-|-+|...-+..+...||.|...+
T Consensus 22 ~C~H~lCEsCvd~iF~~g~~~CpeC~~iL 50 (300)
T KOG3800|consen 22 ECGHRLCESCVDRIFSLGPAQCPECMVIL 50 (300)
T ss_pred cccchHHHHHHHHHHhcCCCCCCcccchh
Confidence 79999999999998776788999999865
No 46
>cd01611 GABARAP Ubiquitin domain of GABA-receptor-associated protein. GABARAP (GABA-receptor-associated protein) belongs ot a large family of proteins that mediate intracellular membrane trafficking and/or fusion. GABARAP binds not only to GABA, type A but also to tubulin, gephrin, and ULK1. Orthologues of GABARAP include Gate-16 (golgi-associated ATPase enhancer), LC3 (microtubule-associated protein light chain 3), and ATG8 (autophagy protein 8). ATG8 is a ubiquitin-like protein that is conjugated to the membrane phospholipid, phosphatidylethanolamine as part of a ubiquitin-like conjugation system essential for autophagosome-formation.
Probab=87.91 E-value=1.4 Score=37.84 Aligned_cols=82 Identities=15% Similarity=0.349 Sum_probs=64.0
Q ss_pred eEEEEeecCCCCCCCCCCCceeccCCccHHHHHHHHHhhccCCccc-EEEEEEeccccCCCCCCCCCCcccCCCcchhhh
Q 018247 251 MHLVLVSLDEQRIPGLQQPYLCCRPTLSVRHLCQYVAHQTALQASE-IEIYLVKELHSKINLPSSSNSLMIDPCKDKLQV 329 (359)
Q Consensus 251 i~l~Lvs~d~q~iP~L~~PYL~CrPTlsVkhLcqyvA~q~sl~~eE-vEi~v~k~~~~~~~~~~~~~~~~~d~~~d~le~ 329 (359)
|.+++-......+|.|.+.-.-...+++|.++..+|-.++.+.+++ |=+||-. .. + +
T Consensus 25 iPVIvE~~~~~~~p~l~k~KflVp~~~tv~~f~~~irk~l~l~~~~slfl~Vn~----~~--p----------~------ 82 (112)
T cd01611 25 IPVIVERYPKSDLPDLDKKKYLVPSDLTVGQFVYIIRKRIQLRPEKALFLFVNN----SL--P----------P------ 82 (112)
T ss_pred eEEEEEEcCCCCcccccCceEEecCCCCHHHHHHHHHHHhCCCccceEEEEECC----cc--C----------C------
Confidence 7777777778899999998777889999999999999999997776 5555521 11 1 1
Q ss_pred ccccccccccccc-cCCCcceeehhhhh
Q 018247 330 LNEQETLTGLQTQ-NLGHGFLLLAYQKI 356 (359)
Q Consensus 330 L~~~~tl~~L~~~-~~~~g~L~l~Y~~k 356 (359)
-+.||++|+-. ....|.|.|.|..-
T Consensus 83 --~~~~~~~lY~~~kd~DGfLyl~Ys~~ 108 (112)
T cd01611 83 --TSATMSQLYEEHKDEDGFLYMTYSSE 108 (112)
T ss_pred --chhHHHHHHHHhCCCCCEEEEEEecc
Confidence 24678999987 66799999999753
No 47
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=86.05 E-value=0.39 Score=37.26 Aligned_cols=29 Identities=28% Similarity=0.624 Sum_probs=24.2
Q ss_pred CCCcc-ccHHHHHHHHhcCCCCcccccccc
Q 018247 2 ECLHR-FCRECIDKAMRLGNNECPACRTHC 30 (359)
Q Consensus 2 ~CGHt-FCR~CI~k~~~~~~~~CPvCR~~~ 30 (359)
.|||- .|..|-.+.|+.....||.||.++
T Consensus 24 tCGHMCmCy~Cg~rl~~~~~g~CPiCRapi 53 (62)
T KOG4172|consen 24 TCGHMCMCYACGLRLKKALHGCCPICRAPI 53 (62)
T ss_pred HcchHHhHHHHHHHHHHccCCcCcchhhHH
Confidence 49994 599999998875567899999976
No 48
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=85.80 E-value=0.35 Score=50.09 Aligned_cols=29 Identities=28% Similarity=0.849 Sum_probs=21.6
Q ss_pred CCCCccccHHHHHHHHhc----C---CCCccccccc
Q 018247 1 MECLHRFCRECIDKAMRL----G---NNECPACRTH 29 (359)
Q Consensus 1 t~CGHtFCR~CI~k~~~~----~---~~~CPvCR~~ 29 (359)
+||+|.||+.|+..+... + .-.||.|.-+
T Consensus 203 lpC~Hv~Ck~C~kdY~~~~i~eg~v~~l~Cp~~~C~ 238 (445)
T KOG1814|consen 203 LPCSHVFCKSCLKDYFTIQIQEGQVSCLKCPDPKCG 238 (445)
T ss_pred cccchHHHHHHHHHHHHHhhhcceeeeecCCCCCCc
Confidence 589999999999998654 2 2358876543
No 49
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=85.02 E-value=0.54 Score=48.63 Aligned_cols=30 Identities=23% Similarity=0.602 Sum_probs=24.7
Q ss_pred CCCccccHHHHHHHHhcCC--CCccccccccc
Q 018247 2 ECLHRFCRECIDKAMRLGN--NECPACRTHCA 31 (359)
Q Consensus 2 ~CGHtFCR~CI~k~~~~~~--~~CPvCR~~~~ 31 (359)
.|||+|=-.|+.+|+.... ..||+|+....
T Consensus 25 ~cGhifh~~cl~qwfe~~Ps~R~cpic~ik~~ 56 (465)
T KOG0827|consen 25 TCGHIFHTTCLTQWFEGDPSNRGCPICQIKLQ 56 (465)
T ss_pred chhhHHHHHHHHHHHccCCccCCCCceeeccc
Confidence 3999999999999997533 47999997653
No 50
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=84.77 E-value=0.34 Score=37.20 Aligned_cols=28 Identities=32% Similarity=0.780 Sum_probs=21.8
Q ss_pred CCCCccccHHHHHHHHhcCCCCccccccccc
Q 018247 1 MECLHRFCRECIDKAMRLGNNECPACRTHCA 31 (359)
Q Consensus 1 t~CGHtFCR~CI~k~~~~~~~~CPvCR~~~~ 31 (359)
++|||..|+.|-.-+ .-+-||.|.++|.
T Consensus 23 ~pCgH~I~~~~f~~~---rYngCPfC~~~~~ 50 (55)
T PF14447_consen 23 LPCGHLICDNCFPGE---RYNGCPFCGTPFE 50 (55)
T ss_pred ccccceeeccccChh---hccCCCCCCCccc
Confidence 489999999995433 2356999999985
No 51
>cd01612 APG12_C Ubiquitin-like domain of APG12. APG12_C The carboxy-terminal ubiquitin-like domain of APG12. Autophagy is a process in which cytoplasmic components are delivered to the lysosome/vacuole for degradation. Autophagy requires a ubiquitin-like protein conjugation system, in which APG12 is covalently bound to APG5.
Probab=84.20 E-value=3.6 Score=33.85 Aligned_cols=72 Identities=22% Similarity=0.326 Sum_probs=55.1
Q ss_pred CCCCCCCCceeccCCccHHHHHHHHHhhccCCccc-EEEEEEeccccCCCCCCCCCCcccCCCcchhhhccccccccccc
Q 018247 262 RIPGLQQPYLCCRPTLSVRHLCQYVAHQTALQASE-IEIYLVKELHSKINLPSSSNSLMIDPCKDKLQVLNEQETLTGLQ 340 (359)
Q Consensus 262 ~iP~L~~PYL~CrPTlsVkhLcqyvA~q~sl~~eE-vEi~v~k~~~~~~~~~~~~~~~~~d~~~d~le~L~~~~tl~~L~ 340 (359)
.+|.|.+.-.--..+++|.++.+||-.++.+++++ |=+||-. .. . |+ -++|+++|+
T Consensus 11 ~~p~l~k~kflv~~~~tv~~~~~~lrk~L~l~~~~slflyvnn----~f--~---------p~--------~d~~~g~LY 67 (87)
T cd01612 11 SAPILKQKVFKISATQSFQAVIDFLRKRLKLKASDSLFLYINN----SF--A---------PS--------PDENVGNLY 67 (87)
T ss_pred CCccccccEEEeCCCCCHHHHHHHHHHHhCCCccCeEEEEECC----cc--C---------CC--------chhHHHHHH
Confidence 47999999888999999999999999999997666 7777721 11 1 11 235788888
Q ss_pred cccCCCcceeehhhhh
Q 018247 341 TQNLGHGFLLLAYQKI 356 (359)
Q Consensus 341 ~~~~~~g~L~l~Y~~k 356 (359)
-.-.-.|.|+|.|..-
T Consensus 68 ~~~~~dGfLyi~Ys~~ 83 (87)
T cd01612 68 RCFGTNGELIVSYCKT 83 (87)
T ss_pred HhcCCCCEEEEEEeCc
Confidence 8744689999999753
No 52
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=83.82 E-value=0.69 Score=38.33 Aligned_cols=29 Identities=28% Similarity=0.556 Sum_probs=25.4
Q ss_pred CCCccccHHHHHHHHhcCCCCccccccccc
Q 018247 2 ECLHRFCRECIDKAMRLGNNECPACRTHCA 31 (359)
Q Consensus 2 ~CGHtFCR~CI~k~~~~~~~~CPvCR~~~~ 31 (359)
-|-|.|=--||.+|+.. ...||+|++++.
T Consensus 53 ~CnHaFH~HCI~rWL~T-k~~CPld~q~w~ 81 (88)
T COG5194 53 VCNHAFHDHCIYRWLDT-KGVCPLDRQTWV 81 (88)
T ss_pred ecchHHHHHHHHHHHhh-CCCCCCCCceeE
Confidence 38999999999999985 678999999874
No 53
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=81.24 E-value=1.1 Score=44.07 Aligned_cols=30 Identities=20% Similarity=0.334 Sum_probs=25.9
Q ss_pred CCCccccHHHHHHHHhcCCCCcccccccccC
Q 018247 2 ECLHRFCRECIDKAMRLGNNECPACRTHCAS 32 (359)
Q Consensus 2 ~CGHtFCR~CI~k~~~~~~~~CPvCR~~~~~ 32 (359)
+|||.||..|.++.++ .-..||+|-.++..
T Consensus 242 ~sg~Vv~~ecvEklir-~D~v~pv~d~plkd 271 (303)
T KOG3039|consen 242 PSGHVVTKECVEKLIR-KDMVDPVTDKPLKD 271 (303)
T ss_pred cCCcEeeHHHHHHhcc-ccccccCCCCcCcc
Confidence 7999999999999987 34679999999853
No 54
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=80.76 E-value=0.61 Score=48.89 Aligned_cols=27 Identities=33% Similarity=0.719 Sum_probs=23.2
Q ss_pred CCCCccccHHHHHHHHhcCCCCcccccccc
Q 018247 1 MECLHRFCRECIDKAMRLGNNECPACRTHC 30 (359)
Q Consensus 1 t~CGHtFCR~CI~k~~~~~~~~CPvCR~~~ 30 (359)
|.|-|+|=-.|+.+||. ..||+||---
T Consensus 195 ~~c~Hsfh~~cl~~w~~---~scpvcR~~q 221 (493)
T KOG0804|consen 195 ILCNHSFHCSCLMKWWD---SSCPVCRYCQ 221 (493)
T ss_pred eecccccchHHHhhccc---CcChhhhhhc
Confidence 57999998899999987 4799999843
No 55
>PHA03096 p28-like protein; Provisional
Probab=80.69 E-value=0.91 Score=44.88 Aligned_cols=27 Identities=30% Similarity=0.276 Sum_probs=19.9
Q ss_pred CCCccccHHHHHHHHhc--CCCCcccccc
Q 018247 2 ECLHRFCRECIDKAMRL--GNNECPACRT 28 (359)
Q Consensus 2 ~CGHtFCR~CI~k~~~~--~~~~CPvCR~ 28 (359)
.|-|.||..||..|... ....||.|+.
T Consensus 203 ~c~h~fc~~ci~~wr~~~~~~e~~~~c~~ 231 (284)
T PHA03096 203 EIKHEFNIFCIKIWMTESLYKETEPENRR 231 (284)
T ss_pred cCCcHHHHHHHHHHHHhhhhcccCccccc
Confidence 69999999999998753 2344555555
No 56
>PF04110 APG12: Ubiquitin-like autophagy protein Apg12 ; InterPro: IPR007242 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents Apg12, which is covalently bound to Apg5 [].; GO: 0000045 autophagic vacuole assembly, 0005737 cytoplasm; PDB: 1WZ3_B.
Probab=78.67 E-value=3.4 Score=34.35 Aligned_cols=82 Identities=16% Similarity=0.276 Sum_probs=52.5
Q ss_pred eEEEEeecCCCCCCCCCCCceeccCCccHHHHHHHHHhhccCC-cccEEEEEEeccccCCCCCCCCCCcccCCCcchhhh
Q 018247 251 MHLVLVSLDEQRIPGLQQPYLCCRPTLSVRHLCQYVAHQTALQ-ASEIEIYLVKELHSKINLPSSSNSLMIDPCKDKLQV 329 (359)
Q Consensus 251 i~l~Lvs~d~q~iP~L~~PYL~CrPTlsVkhLcqyvA~q~sl~-~eEvEi~v~k~~~~~~~~~~~~~~~~~d~~~d~le~ 329 (359)
|.+.|.|.. ..|.|++.-.-+.++-++.++.+||-.+|.++ .+-|=+||-. . +. |+.
T Consensus 2 V~v~fk~iG--~aPilk~~k~kI~~~~~f~~vi~fLrk~Lk~~~~~slFlYin~----s--Fa---------Psp----- 59 (87)
T PF04110_consen 2 VTVRFKAIG--SAPILKQKKFKISASQTFATVIAFLRKKLKLKPSDSLFLYINN----S--FA---------PSP----- 59 (87)
T ss_dssp EEEEEEEET--T----S--EEEEETTSBTHHHHHHHHHHCT----SS-EEEEEE----E--E------------T-----
T ss_pred EEEEEEecC--CCccccCcEEEECCCCchHHHHHHHHHHhCCccCCeEEEEEcC----c--cC---------CCc-----
Confidence 345555665 59999999999999999999999999999995 5667777732 1 11 222
Q ss_pred ccccccccccccccCCCcceeehhhhhh
Q 018247 330 LNEQETLTGLQTQNLGHGFLLLAYQKIL 357 (359)
Q Consensus 330 L~~~~tl~~L~~~~~~~g~L~l~Y~~k~ 357 (359)
+++++.|+-.-..+|.|+|.|....
T Consensus 60 ---De~vg~L~~~f~~~~~Liv~Ys~t~ 84 (87)
T PF04110_consen 60 ---DETVGDLYRCFGTNGELIVSYSKTP 84 (87)
T ss_dssp ---TSBHHHHHHHH-BTTBEEEEEESSS
T ss_pred ---hhHHHHHHHHhCCCCEEEEEEeccc
Confidence 4678888887448899999997643
No 57
>cd01806 Nedd8 Nebb8-like ubiquitin protein. Nedd8 (also known as Rub1) has a single conserved ubiquitin-like domain that is part of a protein modification pathway similar to that of ubiquitin. Nedd8 modifies a family of molecular scaffold proteins called cullins that are responsible for assembling the ROC1/Rbx1 RING-based E3 ubiquitin ligases, of which several play a direct role in tumorigenesis.
Probab=75.41 E-value=5.1 Score=30.30 Aligned_cols=44 Identities=14% Similarity=0.228 Sum_probs=36.4
Q ss_pred EEEEeecCCCCCCCCCCCceeccCCccHHHHHHHHHhhccCCcccEEEEE
Q 018247 252 HLVLVSLDEQRIPGLQQPYLCCRPTLSVRHLCQYVAHQTALQASEIEIYL 301 (359)
Q Consensus 252 ~l~Lvs~d~q~iP~L~~PYL~CrPTlsVkhLcqyvA~q~sl~~eEvEi~v 301 (359)
.+.+..++++.++ +...|+.||..|.+.|+.+++.++++.-|+.
T Consensus 2 ~i~v~~~~g~~~~------~~v~~~~tv~~lK~~i~~~~g~~~~~qrL~~ 45 (76)
T cd01806 2 LIKVKTLTGKEIE------IDIEPTDKVERIKERVEEKEGIPPQQQRLIY 45 (76)
T ss_pred EEEEEeCCCCEEE------EEECCCCCHHHHHHHHhHhhCCChhhEEEEE
Confidence 3455567777765 6788999999999999999999999887774
No 58
>cd01803 Ubiquitin Ubiquitin. Ubiquitin (includes Ubq/RPL40e and Ubq/RPS27a fusions as well as homopolymeric multiubiquitin protein chains)
Probab=75.05 E-value=4.6 Score=30.55 Aligned_cols=43 Identities=9% Similarity=0.276 Sum_probs=34.9
Q ss_pred EEEeecCCCCCCCCCCCceeccCCccHHHHHHHHHhhccCCcccEEEEE
Q 018247 253 LVLVSLDEQRIPGLQQPYLCCRPTLSVRHLCQYVAHQTALQASEIEIYL 301 (359)
Q Consensus 253 l~Lvs~d~q~iP~L~~PYL~CrPTlsVkhLcqyvA~q~sl~~eEvEi~v 301 (359)
+.+-.++++.+. +...|+.||..|.+.|+.+++.++++.-|+.
T Consensus 3 i~v~~~~g~~~~------~~v~~~~tV~~lK~~i~~~~g~~~~~q~L~~ 45 (76)
T cd01803 3 IFVKTLTGKTIT------LEVEPSDTIENVKAKIQDKEGIPPDQQRLIF 45 (76)
T ss_pred EEEEcCCCCEEE------EEECCcCcHHHHHHHHHHHhCCCHHHeEEEE
Confidence 444456665543 7888999999999999999999999988875
No 59
>PF02991 Atg8: Autophagy protein Atg8 ubiquitin like; InterPro: IPR004241 Autophagy is generally known as a process involved in the degradation of bulk cytoplasmic components that are non-specifically sequestered into an autophagosome, where they are sequestered into double-membrane vesicles and delivered to the degradative organelle, the lysosome/vacuole, for breakdown and eventual recycling of the resulting macromolecules. The yeast proteins are involved in the autophagosome, and Atg8 binds Atg19, via its N terminus and the C terminus of Atg19. Light chain 3 is proposed to function primarily as a subunit of microtubule associated proteins 1A and 1B and that its expression may regulate microtubule binding activity [] Related proteins that belong to this group include the human ganglioside expression factor and a symbiosis-related fungal protein.; PDB: 3ECI_A 3D32_B 1GNU_A 1KM7_A 1KLV_A 1KOT_A 3DOW_A 1KJT_A 1V49_A 2ZJD_C ....
Probab=73.17 E-value=9.2 Score=32.55 Aligned_cols=81 Identities=15% Similarity=0.337 Sum_probs=54.8
Q ss_pred eEEEEeecCCCCCCCCCCCceeccCCccHHHHHHHHHhhccCCcccEEEEEEeccccCCCCCCCCCCcccCCCcchhhhc
Q 018247 251 MHLVLVSLDEQRIPGLQQPYLCCRPTLSVRHLCQYVAHQTALQASEIEIYLVKELHSKINLPSSSNSLMIDPCKDKLQVL 330 (359)
Q Consensus 251 i~l~Lvs~d~q~iP~L~~PYL~CrPTlsVkhLcqyvA~q~sl~~eEvEi~v~k~~~~~~~~~~~~~~~~~d~~~d~le~L 330 (359)
|.+++-......+|.|.+.-.-...++||.++...|-..+.+.+++- ||+--+. . .+
T Consensus 17 IPVIvEr~~~s~lp~ldk~KfLvp~~~tv~qf~~~ir~rl~l~~~~a-lfl~Vn~--~--------------------lp 73 (104)
T PF02991_consen 17 IPVIVERYPKSKLPDLDKKKFLVPKDLTVGQFVYIIRKRLQLSPEQA-LFLFVNN--T--------------------LP 73 (104)
T ss_dssp EEEEEEE-TTSSS---SSSEEEEETTSBHHHHHHHHHHHTT--TTS--EEEEBTT--B--------------------ES
T ss_pred cEEEEEEccCCChhhcCccEEEEcCCCchhhHHHHhhhhhcCCCCce-EEEEEcC--c--------------------cc
Confidence 88888888888899999985557789999999999999999976642 3332211 1 11
Q ss_pred cccccccccccc-cCCCcceeehhh
Q 018247 331 NEQETLTGLQTQ-NLGHGFLLLAYQ 354 (359)
Q Consensus 331 ~~~~tl~~L~~~-~~~~g~L~l~Y~ 354 (359)
.-..||++|+.. -+--|.|.|.|+
T Consensus 74 ~~s~tm~elY~~~kdeDGFLY~~Ys 98 (104)
T PF02991_consen 74 STSSTMGELYEKYKDEDGFLYMTYS 98 (104)
T ss_dssp STTSBHHHHHHHHB-TTSSEEEEEE
T ss_pred chhhHHHHHHHHhCCCCCeEEEEec
Confidence 234688999987 667899999986
No 60
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=71.98 E-value=1.4 Score=43.93 Aligned_cols=31 Identities=29% Similarity=0.710 Sum_probs=25.4
Q ss_pred CCCCccccHHHHHHHHhcC-CCCccccccccc
Q 018247 1 MECLHRFCRECIDKAMRLG-NNECPACRTHCA 31 (359)
Q Consensus 1 t~CGHtFCR~CI~k~~~~~-~~~CPvCR~~~~ 31 (359)
+.|+|+|=-.||..|.-.+ ...||.|++.+.
T Consensus 250 LsCnHvFHEfCIrGWcivGKkqtCPYCKekVd 281 (328)
T KOG1734|consen 250 LSCNHVFHEFCIRGWCIVGKKQTCPYCKEKVD 281 (328)
T ss_pred eecccchHHHhhhhheeecCCCCCchHHHHhh
Confidence 3699999999999996554 457999999753
No 61
>COG3813 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=71.81 E-value=2.9 Score=34.19 Aligned_cols=35 Identities=23% Similarity=0.671 Sum_probs=26.2
Q ss_pred CccccHHHHHHHHhcCCCCcccccccccCCCCCCCChHH
Q 018247 4 LHRFCRECIDKAMRLGNNECPACRTHCASRRSLRDDLNY 42 (359)
Q Consensus 4 GHtFCR~CI~k~~~~~~~~CPvCR~~~~~~~~LRpn~~L 42 (359)
-|+||..|.+..+. ..||.|.-.+.. +.+||...|
T Consensus 28 EcTFCadCae~~l~---g~CPnCGGelv~-RP~RPaa~L 62 (84)
T COG3813 28 ECTFCADCAENRLH---GLCPNCGGELVA-RPIRPAAKL 62 (84)
T ss_pred eeehhHhHHHHhhc---CcCCCCCchhhc-CcCChHHHH
Confidence 37999999998775 469999998853 446765444
No 62
>PF06844 DUF1244: Protein of unknown function (DUF1244); InterPro: IPR009654 This family consists of several short bacterial proteins of around 100 residues in length. The function of this family is unknown.; PDB: 2O35_A 3FYB_B.
Probab=67.17 E-value=3.1 Score=33.22 Aligned_cols=13 Identities=46% Similarity=1.004 Sum_probs=9.2
Q ss_pred cccHHHHHHHHhc
Q 018247 6 RFCRECIDKAMRL 18 (359)
Q Consensus 6 tFCR~CI~k~~~~ 18 (359)
-|||.|+.+|...
T Consensus 11 gFCRNCLskWy~~ 23 (68)
T PF06844_consen 11 GFCRNCLSKWYRE 23 (68)
T ss_dssp S--HHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 5999999999863
No 63
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=66.26 E-value=3.5 Score=42.41 Aligned_cols=28 Identities=32% Similarity=0.851 Sum_probs=23.0
Q ss_pred CCCCccccHHHHHHH--HhcCCCCccccccc
Q 018247 1 MECLHRFCRECIDKA--MRLGNNECPACRTH 29 (359)
Q Consensus 1 t~CGHtFCR~CI~k~--~~~~~~~CPvCR~~ 29 (359)
+||+|.-|.-|-.+. +. ..+.||.||+.
T Consensus 77 ~PC~H~~CH~Ca~RlRALY-~~K~C~~CrTE 106 (493)
T COG5236 77 YPCGHQICHACAVRLRALY-MQKGCPLCRTE 106 (493)
T ss_pred ccCCchHHHHHHHHHHHHH-hccCCCccccc
Confidence 599999999998764 33 36789999985
No 64
>PF06906 DUF1272: Protein of unknown function (DUF1272); InterPro: IPR010696 This family consists of several hypothetical bacterial proteins of around 80 residues in length. This family contains a number of conserved cysteine residues and its function is unknown.
Probab=66.15 E-value=5.1 Score=31.11 Aligned_cols=25 Identities=28% Similarity=0.886 Sum_probs=21.1
Q ss_pred cccHHHHHHHHhcCCCCcccccccccCC
Q 018247 6 RFCRECIDKAMRLGNNECPACRTHCASR 33 (359)
Q Consensus 6 tFCR~CI~k~~~~~~~~CPvCR~~~~~~ 33 (359)
+||..|....+. ..||-|.-.+..+
T Consensus 30 TFC~~C~e~~l~---~~CPNCgGelv~R 54 (57)
T PF06906_consen 30 TFCADCAETMLN---GVCPNCGGELVRR 54 (57)
T ss_pred cccHHHHHHHhc---CcCcCCCCccccC
Confidence 899999999874 5799999988654
No 65
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=64.46 E-value=6.9 Score=40.95 Aligned_cols=76 Identities=17% Similarity=0.172 Sum_probs=47.5
Q ss_pred CceeccCCccHHHHHHHHHhhccCCcccEEEEEEeccccCCCCCCCCCCcccCCC-cchhhhccccccccccccc-cCCC
Q 018247 269 PYLCCRPTLSVRHLCQYVAHQTALQASEIEIYLVKELHSKINLPSSSNSLMIDPC-KDKLQVLNEQETLTGLQTQ-NLGH 346 (359)
Q Consensus 269 PYL~CrPTlsVkhLcqyvA~q~sl~~eEvEi~v~k~~~~~~~~~~~~~~~~~d~~-~d~le~L~~~~tl~~L~~~-~~~~ 346 (359)
|-+.||||..=..-|+..-.|.=++++|.-+.|.-+... ...-+-||+ ...+|.|.=.+-|-++++. .-..
T Consensus 372 pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd~t-------n~lil~D~~s~evvQ~l~~~epv~Dicp~~~n~~ 444 (463)
T KOG1645|consen 372 PVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVGDST-------NELILQDPHSFEVVQTLALSEPVLDICPNDTNGS 444 (463)
T ss_pred eeeeecccccCCcccccccccceeccccccEEEEecCCc-------ceeEEeccchhheeeecccCcceeecceeecCCc
Confidence 556678887655555666666667777775555443311 111366775 6678888888888888887 4444
Q ss_pred cceee
Q 018247 347 GFLLL 351 (359)
Q Consensus 347 g~L~l 351 (359)
++|-+
T Consensus 445 syLa~ 449 (463)
T KOG1645|consen 445 SYLAL 449 (463)
T ss_pred chhhh
Confidence 45443
No 66
>PF11543 UN_NPL4: Nuclear pore localisation protein NPL4; InterPro: IPR024682 Npl4, along with Ufd1, forms the heterodimer adaptor complex UN, which is involved in the recruitment of p97, an AAA ATPase, for tasks involving the ubiquitin pathway. Npl4 has a N-terminal ubiquitin-like domain which has within its structure a beta-grasp fold with a helical insert []. This entry represents the ubiquitin-like domain.; PDB: 2PJH_A 1WF9_A.
Probab=63.33 E-value=6.1 Score=31.87 Aligned_cols=60 Identities=20% Similarity=0.326 Sum_probs=31.2
Q ss_pred eeccCCccHHHHHHHHHhhccCCcccEEEEEEeccccCCCCCCCCCCcccCCCcchhhhccccccccccccccCCCccee
Q 018247 271 LCCRPTLSVRHLCQYVAHQTALQASEIEIYLVKELHSKINLPSSSNSLMIDPCKDKLQVLNEQETLTGLQTQNLGHGFLL 350 (359)
Q Consensus 271 L~CrPTlsVkhLcqyvA~q~sl~~eEvEi~v~k~~~~~~~~~~~~~~~~~d~~~d~le~L~~~~tl~~L~~~~~~~g~L~ 350 (359)
+.|-|+=||.+|.+-|+.+++++.+...+|...+... ++.- ....||++| ...||+|+
T Consensus 18 ie~~~~~t~~~L~~kI~~~l~~~~~~~~L~~~~~~~~------------------~l~s-~~~~tl~~l---glkHGdml 75 (80)
T PF11543_consen 18 IEVSPSSTLSDLKEKISEQLSIPDSSQSLSKDRNNKE------------------ELKS-SDSKTLSSL---GLKHGDML 75 (80)
T ss_dssp EEE-TTSBHHHHHHHHHHHS---TTT---BSSGGGGG------------------CSSS--TT-CCCCT------TT-EE
T ss_pred EEcCCcccHHHHHHHHHHHcCCCCcceEEEecCCCCc------------------cccc-CCcCCHHHc---CCCCccEE
Confidence 3577999999999999999999988776664432211 1110 235666655 66799988
Q ss_pred eh
Q 018247 351 LA 352 (359)
Q Consensus 351 l~ 352 (359)
..
T Consensus 76 yL 77 (80)
T PF11543_consen 76 YL 77 (80)
T ss_dssp E-
T ss_pred EE
Confidence 54
No 67
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=62.56 E-value=3.6 Score=42.90 Aligned_cols=28 Identities=32% Similarity=0.924 Sum_probs=24.1
Q ss_pred CCCCccccHHHHHHHHhc-CCCCcccccc
Q 018247 1 MECLHRFCRECIDKAMRL-GNNECPACRT 28 (359)
Q Consensus 1 t~CGHtFCR~CI~k~~~~-~~~~CPvCR~ 28 (359)
+||.|.|=-+|+...+.. ....||.||.
T Consensus 385 LpCsHIfH~rCl~e~L~~n~~rsCP~Crk 413 (518)
T KOG1941|consen 385 LPCSHIFHLRCLQEILENNGTRSCPNCRK 413 (518)
T ss_pred cchhHHHHHHHHHHHHHhCCCCCCccHHH
Confidence 589999999999998854 4578999994
No 68
>PF00240 ubiquitin: Ubiquitin family; InterPro: IPR000626 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade. There are many different E3 ligases, which are responsible for the type of ubiquitin chain formed, the specificity of the target protein, and the regulation of the ubiquitinylation process []. Ubiquitinylation is an important regulatory tool that controls the concentration of key signalling proteins, such as those involved in cell cycle control, as well as removing misfolded, damaged or mutant proteins that could be harmful to the cell. Several ubiquitin-like molecules have been discovered, such as Ufm1 (IPR005375 from INTERPRO), SUMO1 (IPR003653 from INTERPRO), NEDD8, Rad23 (IPR004806 from INTERPRO), Elongin B and Parkin (IPR003977 from INTERPRO), the latter being involved in Parkinson's disease []. Ubiquitin is a protein of 76 amino acid residues, found in all eukaryotic cells and whose sequence is extremely well conserved from protozoan to vertebrates. Ubiquitin acts through its post-translational attachment (ubiquitinylation) to other proteins, where these modifications alter the function, location or trafficking of the protein, or targets it for destruction by the 26S proteasome []. The terminal glycine in the C-terminal 4-residue tail of ubiquitin can form an isopeptide bond with a lysine residue in the target protein, or with a lysine in another ubiquitin molecule to form a ubiquitin chain that attaches itself to a target protein. Ubiquitin has seven lysine residues, any one of which can be used to link ubiquitin molecules together, resulting in different structures that alter the target protein in different ways. It appears that Lys(11)-, Lys(29) and Lys(48)-linked poly-ubiquitin chains target the protein to the proteasome for degradation, while mono-ubiquitinylated and Lys(6)- or Lys(63)-linked poly-ubiquitin chains signal reversible modifications in protein activity, location or trafficking []. For example, Lys(63)-linked poly-ubiquitinylation is known to be involved in DNA damage tolerance, inflammatory response, protein trafficking and signal transduction through kinase activation []. In addition, the length of the ubiquitin chain alters the fate of the target protein. Regulatory proteins such as transcription factors and histones are frequent targets of ubquitinylation [].; GO: 0005515 protein binding; PDB: 2DZI_A 2XEW_E 3NOB_E 2KWU_B 2Y5B_F 3PHD_G 2KWV_B 2KOX_A 2XK5_B 3NHE_B ....
Probab=61.54 E-value=13 Score=27.72 Aligned_cols=32 Identities=22% Similarity=0.258 Sum_probs=29.1
Q ss_pred eeccCCccHHHHHHHHHhhccCCcccEEEEEE
Q 018247 271 LCCRPTLSVRHLCQYVAHQTALQASEIEIYLV 302 (359)
Q Consensus 271 L~CrPTlsVkhLcqyvA~q~sl~~eEvEi~v~ 302 (359)
+.+.|+-||..|.+.|+.+++++++++-|+..
T Consensus 10 ~~v~~~~tV~~lK~~i~~~~~~~~~~~~L~~~ 41 (69)
T PF00240_consen 10 LEVDPDDTVADLKQKIAEETGIPPEQQRLIYN 41 (69)
T ss_dssp EEEETTSBHHHHHHHHHHHHTSTGGGEEEEET
T ss_pred EEECCCCCHHHhhhhcccccccccccceeeee
Confidence 56789999999999999999999999988763
No 69
>PHA02862 5L protein; Provisional
Probab=61.40 E-value=5.6 Score=36.34 Aligned_cols=25 Identities=20% Similarity=0.557 Sum_probs=20.3
Q ss_pred HHHHHHHHhc-CCCCcccccccccCC
Q 018247 9 RECIDKAMRL-GNNECPACRTHCASR 33 (359)
Q Consensus 9 R~CI~k~~~~-~~~~CPvCR~~~~~~ 33 (359)
+.|+.+|+.. +...||+|+.++.-+
T Consensus 30 q~CL~~WIn~S~k~~CeLCkteY~Ik 55 (156)
T PHA02862 30 IKCMQLWINYSKKKECNLCKTKYNIK 55 (156)
T ss_pred HHHHHHHHhcCCCcCccCCCCeEEEE
Confidence 6899999975 467899999987543
No 70
>cd01807 GDX_N ubiquitin-like domain of GDX. GDX contains an N-terminal ubiquitin-like domain as well as an uncharacterized c-terminal domain. The function of GDX is unknown.
Probab=59.24 E-value=17 Score=27.94 Aligned_cols=40 Identities=15% Similarity=0.159 Sum_probs=32.6
Q ss_pred ecCCCCCCCCCCCceeccCCccHHHHHHHHHhhccCCcccEEEEEE
Q 018247 257 SLDEQRIPGLQQPYLCCRPTLSVRHLCQYVAHQTALQASEIEIYLV 302 (359)
Q Consensus 257 s~d~q~iP~L~~PYL~CrPTlsVkhLcqyvA~q~sl~~eEvEi~v~ 302 (359)
.++++.++ |...|+.||..|.+-|+...++++++.-|+..
T Consensus 7 ~~~G~~~~------l~v~~~~tV~~lK~~i~~~~gi~~~~q~L~~~ 46 (74)
T cd01807 7 LLQGRECS------LQVSEKESVSTLKKLVSEHLNVPEEQQRLLFK 46 (74)
T ss_pred eCCCCEEE------EEECCCCcHHHHHHHHHHHHCCCHHHeEEEEC
Confidence 34555543 57889999999999999999999999888743
No 71
>cd01798 parkin_N amino-terminal ubiquitin-like of parkin protein. parkin_N parkin protein is a RING-type E3 ubiquitin ligase with an amino-terminal ubiquitin-like (Ubl) domain and an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain. Naturally occurring mutations in parkin are thought to cause the disease AR_JP (autosomal-recessive juvenile parkinsonism). Parkin binds the Rpn10 subunit of 26S proteasomes through its Ubl domain.
Probab=58.95 E-value=11 Score=28.72 Aligned_cols=32 Identities=13% Similarity=0.359 Sum_probs=28.3
Q ss_pred eeccCCccHHHHHHHHHhhccCCcccEEEEEE
Q 018247 271 LCCRPTLSVRHLCQYVAHQTALQASEIEIYLV 302 (359)
Q Consensus 271 L~CrPTlsVkhLcqyvA~q~sl~~eEvEi~v~ 302 (359)
|-+.|+.||..|.++||.+.++++++.-|+..
T Consensus 13 ~~v~~~~tV~~lK~~i~~~~gi~~~~q~Li~~ 44 (70)
T cd01798 13 VEVDPDTDIKQLKEVVAKRQGVPPDQLRVIFA 44 (70)
T ss_pred EEECCCChHHHHHHHHHHHHCCCHHHeEEEEC
Confidence 67889999999999999999999999877643
No 72
>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.
Probab=57.30 E-value=4.9 Score=30.35 Aligned_cols=27 Identities=22% Similarity=0.687 Sum_probs=19.8
Q ss_pred CccccHHHHHHHHhcCCCCccccccccc
Q 018247 4 LHRFCRECIDKAMRLGNNECPACRTHCA 31 (359)
Q Consensus 4 GHtFCR~CI~k~~~~~~~~CPvCR~~~~ 31 (359)
-|-.|..|+...+. ....||+|..++.
T Consensus 20 dHYLCl~CLt~ml~-~s~~C~iC~~~LP 46 (50)
T PF03854_consen 20 DHYLCLNCLTLMLS-RSDRCPICGKPLP 46 (50)
T ss_dssp S-EEEHHHHHHT-S-SSSEETTTTEE--
T ss_pred chhHHHHHHHHHhc-cccCCCcccCcCc
Confidence 47889999999876 4678999999874
No 73
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=56.41 E-value=9.6 Score=31.44 Aligned_cols=30 Identities=37% Similarity=0.919 Sum_probs=16.0
Q ss_pred CCCccccHHHHHHHHhcCCCCccccccccc
Q 018247 2 ECLHRFCRECIDKAMRLGNNECPACRTHCA 31 (359)
Q Consensus 2 ~CGHtFCR~CI~k~~~~~~~~CPvCR~~~~ 31 (359)
+|+--.||.|.+--.+.+...||+|++.+.
T Consensus 33 eC~fPvCr~CyEYErkeg~q~CpqCkt~yk 62 (80)
T PF14569_consen 33 ECAFPVCRPCYEYERKEGNQVCPQCKTRYK 62 (80)
T ss_dssp SS-----HHHHHHHHHTS-SB-TTT--B--
T ss_pred ccCCccchhHHHHHhhcCcccccccCCCcc
Confidence 578788999988767667889999999874
No 74
>cd01793 Fubi Fubi ubiquitin-like protein. Fubi is a ubiquitin-like protein encoded by the fau gene which has an N-terminal ubiquitin-like domain (also referred to as FUBI) fused to the ribosomal protein S30. Fubi is thought to be a tumor suppressor protein and the FUBI domain may act as a substitute or an inhibitor of ubiquitin or one of ubiquitin's close relatives UCRP, FAT10, and Nedd8.
Probab=54.66 E-value=17 Score=27.98 Aligned_cols=32 Identities=16% Similarity=0.107 Sum_probs=28.5
Q ss_pred ceeccCCccHHHHHHHHHhhccCCcccEEEEE
Q 018247 270 YLCCRPTLSVRHLCQYVAHQTALQASEIEIYL 301 (359)
Q Consensus 270 YL~CrPTlsVkhLcqyvA~q~sl~~eEvEi~v 301 (359)
-|-+.|+.||..|.+.|+.+.+.++++.-|+.
T Consensus 12 ~l~v~~~~tV~~lK~~i~~~~gip~~~q~Li~ 43 (74)
T cd01793 12 TLEVTGQETVSDIKAHVAGLEGIDVEDQVLLL 43 (74)
T ss_pred EEEECCcCcHHHHHHHHHhhhCCCHHHEEEEE
Confidence 36788999999999999999999999987764
No 75
>cd01805 RAD23_N Ubiquitin-like domain of RAD23. RAD23 belongs to a family of adaptor molecules having affinity for both the proteasome and ubiquitinylated proteins and thought to shuttle these ubiquitinylated proteins to the proteasome for destruction. RAD23 interacts with ubiquitin through its C-terminal ubiquitin-associated domains (UBA) and with the proteasome through its N-terminal ubiquitin-like domain (UBL).
Probab=54.14 E-value=18 Score=27.65 Aligned_cols=32 Identities=9% Similarity=0.140 Sum_probs=28.2
Q ss_pred ceeccCCccHHHHHHHHHhhccC--CcccEEEEE
Q 018247 270 YLCCRPTLSVRHLCQYVAHQTAL--QASEIEIYL 301 (359)
Q Consensus 270 YL~CrPTlsVkhLcqyvA~q~sl--~~eEvEi~v 301 (359)
.|.+.|+.||..|.+.|+.+++. ++++.-|+.
T Consensus 14 ~l~v~~~~TV~~lK~~i~~~~~i~~~~~~q~L~~ 47 (77)
T cd01805 14 PIEVDPDDTVAELKEKIEEEKGCDYPPEQQKLIY 47 (77)
T ss_pred EEEECCCCcHHHHHHHHHHhhCCCCChhHeEEEE
Confidence 37789999999999999999998 888887764
No 76
>cd00196 UBQ Ubiquitin-like proteins. Ubiquitin homologs; Includes ubiquitin and ubiquitin-like proteins. Ubiquitin-mediated proteolysis is part of the regulated turnover of proteins required for controlling cell cycle progression. Other family members are protein modifiers that perform a wide range of functions. Ubiquitination usually results in a covalent bond between the C-terminus of ubiquitin and the epsilon-amino group of a substrate lysine. The three-step mechanism requires an activating enzyme (E1) that forms a thiol ester with the C-terminal carboxy group, a conjugating enzyme (E2) that transiently carries the activated ubiquitin molecule as a thiol ester, and a ligase (E3) that transfers the activated ubiquitin from the E2 to the substrate lysine residue. In poly-ubiquitination, ubiquitin itself is the substrate.
Probab=51.56 E-value=22 Score=23.33 Aligned_cols=35 Identities=14% Similarity=0.196 Sum_probs=29.9
Q ss_pred eeccCCccHHHHHHHHHhhccCCcccEEEEEEecc
Q 018247 271 LCCRPTLSVRHLCQYVAHQTALQASEIEIYLVKEL 305 (359)
Q Consensus 271 L~CrPTlsVkhLcqyvA~q~sl~~eEvEi~v~k~~ 305 (359)
+-+.+..||..|.++|+.+.+..++++.|++....
T Consensus 12 ~~~~~~~tv~~l~~~i~~~~~~~~~~~~l~~~~~~ 46 (69)
T cd00196 12 LLVPSGTTVADLKEKLAKKLGLPPEQQRLLVNGKI 46 (69)
T ss_pred EEcCCCCcHHHHHHHHHHHHCcChHHeEEEECCeE
Confidence 34558999999999999999999999999886644
No 77
>cd01794 DC_UbP_C dendritic cell derived ubiquitin-like protein. DC_UbP (dendritic cell derived ubiquitin-like protein) is a ubiquitin-like protein from human dendritic cells that is expressed in the mitochondrion. The ubiquitin-like domain of this protein is found at the C-terminus and lacks the canonical gly-gly motif of ubiquitin required for ubiquitinization. DC_UbP is expressed in tumor cells but not in normal human adult tissue suggesting a role for DC_UbP in tumorogenesis.
Probab=50.82 E-value=17 Score=28.28 Aligned_cols=32 Identities=9% Similarity=0.110 Sum_probs=28.8
Q ss_pred eeccCCccHHHHHHHHHhhccCCcccEEEEEE
Q 018247 271 LCCRPTLSVRHLCQYVAHQTALQASEIEIYLV 302 (359)
Q Consensus 271 L~CrPTlsVkhLcqyvA~q~sl~~eEvEi~v~ 302 (359)
|.+.|+.||..|+++|+.+.+.++++.-|+..
T Consensus 13 l~v~~~~TV~~lK~~I~~~~gi~~~~q~Li~~ 44 (70)
T cd01794 13 LSVSSKDTVGQLKKQLQAAEGVDPCCQRWFFS 44 (70)
T ss_pred EEECCcChHHHHHHHHHHHhCCCHHHeEEEEC
Confidence 78899999999999999999999999887653
No 78
>cd01796 DDI1_N DNA damage inducible protein 1 ubiquitin-like domain. DDI1_N DDI1 (DNA damage inducible protein 1) has an amino-terminal ubiquitin-like domain, an retroviral protease-like (RVP-like) domain, and a UBA (ubiquitin-associated) domain. This CD represents the amino-terminal ubiquitin-like domain of DDI1.
Probab=50.32 E-value=17 Score=27.96 Aligned_cols=33 Identities=15% Similarity=0.255 Sum_probs=28.9
Q ss_pred eeccCCccHHHHHHHHHhhccCCcccEEEEEEe
Q 018247 271 LCCRPTLSVRHLCQYVAHQTALQASEIEIYLVK 303 (359)
Q Consensus 271 L~CrPTlsVkhLcqyvA~q~sl~~eEvEi~v~k 303 (359)
|.+.|+.||..|+++|+.+.++++++.-|+...
T Consensus 14 l~v~~~~TV~~lK~~I~~~~gip~~~q~Li~~G 46 (71)
T cd01796 14 LDVDPDLELENFKALCEAESGIPASQQQLIYNG 46 (71)
T ss_pred EEECCcCCHHHHHHHHHHHhCCCHHHeEEEECC
Confidence 677899999999999999999999998776543
No 79
>cd01809 Scythe_N Ubiquitin-like domain of Scythe protein. Scythe protein (also known as Bat3) is an apoptotic regulator that is highly conserved in eukaryotes and contains a ubiquitin-like domain near its N-terminus. Scythe binds reaper, a potent apoptotic inducer, and Scythe/Reaper are thought to signal apoptosis, in part through regulating the folding and activity of apoptotic signaling molecules.
Probab=50.12 E-value=29 Score=25.81 Aligned_cols=31 Identities=10% Similarity=0.231 Sum_probs=28.4
Q ss_pred eeccCCccHHHHHHHHHhhccCCcccEEEEE
Q 018247 271 LCCRPTLSVRHLCQYVAHQTALQASEIEIYL 301 (359)
Q Consensus 271 L~CrPTlsVkhLcqyvA~q~sl~~eEvEi~v 301 (359)
+.+.|+.||..|++-|+.+++.+++..-|+.
T Consensus 15 ~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~ 45 (72)
T cd01809 15 FTVEEEITVLDLKEKIAEEVGIPVEQQRLIY 45 (72)
T ss_pred EEECCCCcHHHHHHHHHHHHCcCHHHeEEEE
Confidence 7778999999999999999999999988876
No 80
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=48.90 E-value=10 Score=38.90 Aligned_cols=29 Identities=31% Similarity=1.016 Sum_probs=20.6
Q ss_pred CCCccccHHHHHHHHhc-----CCCCccc--ccccc
Q 018247 2 ECLHRFCRECIDKAMRL-----GNNECPA--CRTHC 30 (359)
Q Consensus 2 ~CGHtFCR~CI~k~~~~-----~~~~CPv--CR~~~ 30 (359)
.|+|.||..|..++... ....||. |...+
T Consensus 167 ~C~H~fC~~C~k~~iev~~~~~~~~~C~~~~C~~~l 202 (384)
T KOG1812|consen 167 KCGHRFCKDCVKQHIEVKLLSGTVIRCPHDGCESRL 202 (384)
T ss_pred cccchhhhHHhHHHhhhhhccCCCccCCCCCCCccC
Confidence 59999999999998763 1235664 55544
No 81
>cd01769 UBL Ubiquitin-like domain of UBL. UBLs function by remodeling the surface of their target proteins, changing their target's half-life, enzymatic activity, protein-protein interactions, subcellular localization or other properties. At least 10 different ubiquitin-like modifications exist in mammals, and attachment of different ubls to a target leads to different biological consequences. Ubl-conjugation cascades are initiated by activating enzymes, which also coordinate the ubls with their downstream pathways.
Probab=48.62 E-value=24 Score=25.53 Aligned_cols=31 Identities=16% Similarity=0.206 Sum_probs=26.7
Q ss_pred eeccCCccHHHHHHHHHhhccCCcccEEEEE
Q 018247 271 LCCRPTLSVRHLCQYVAHQTALQASEIEIYL 301 (359)
Q Consensus 271 L~CrPTlsVkhLcqyvA~q~sl~~eEvEi~v 301 (359)
+.+.|+.||..|++.|+.+++++++.+-|+.
T Consensus 12 ~~~~~~~ti~~lK~~i~~~~~~~~~~~~l~~ 42 (69)
T cd01769 12 LEVSPDDTVAELKAKIAAKEGVPPEQQRLIY 42 (69)
T ss_pred EEECCCChHHHHHHHHHHHHCcChHHEEEEE
Confidence 4567889999999999999999999887733
No 82
>cd01776 Rin1_RA Ubiquitin domain of RIN1 RAS effector. Rin1_RA RIN1 is a RAS effector that binds with specificity and high affinity to activated RAS via its carboxy-terminal RA (RAS-associated) domain. RIN1 competes directly with RAF1 for RAS binding and is thought to divert signaling away from RAF and the MAPK pathway while also shunting RAS signals through alternate pathways. In addition, Rin1 and Rin2 are Rab5-binding proteins, binding preferentially to the GTP-bound form, that enhance the GDP-GTP exchange reaction on Rab5 that regulate the docking and fusion processes of endocytic vesicles. In addition to the RA domain, RIN1 and RIN2 have an SH2 (Src homology 2) domain, a proline-rich SH3 domain, and a Vps9 domain.
Probab=48.44 E-value=28 Score=29.19 Aligned_cols=35 Identities=29% Similarity=0.524 Sum_probs=31.7
Q ss_pred eeccCCccHHHHHHHHHhhccC-CcccEEEEEEecc
Q 018247 271 LCCRPTLSVRHLCQYVAHQTAL-QASEIEIYLVKEL 305 (359)
Q Consensus 271 L~CrPTlsVkhLcqyvA~q~sl-~~eEvEi~v~k~~ 305 (359)
|-.+|+.|++.||+-+|.+..+ ++|+-=+|+.++.
T Consensus 18 L~V~P~~tt~~vc~lcA~Kf~V~qPe~y~LFl~vdg 53 (87)
T cd01776 18 LLVRPYITTEDVCQLCAEKFKVTQPEEYSLFLFVEE 53 (87)
T ss_pred eecCCCCcHHHHHHHHHHHhccCChhheeEEEEECC
Confidence 4568999999999999999999 7999999998865
No 83
>smart00213 UBQ Ubiquitin homologues. Ubiquitin-mediated proteolysis is involved in the regulated turnover of proteins required for controlling cell cycle progression
Probab=46.08 E-value=28 Score=24.93 Aligned_cols=32 Identities=19% Similarity=0.267 Sum_probs=28.2
Q ss_pred eeccCCccHHHHHHHHHhhccCCcccEEEEEE
Q 018247 271 LCCRPTLSVRHLCQYVAHQTALQASEIEIYLV 302 (359)
Q Consensus 271 L~CrPTlsVkhLcqyvA~q~sl~~eEvEi~v~ 302 (359)
+...|+.||..|.+.|+.+++++++++-|+..
T Consensus 14 ~~v~~~~tv~~lk~~i~~~~~~~~~~~~L~~~ 45 (64)
T smart00213 14 LEVKPSDTVSELKEKIAELTGIPVEQQRLIYK 45 (64)
T ss_pred EEECCCCcHHHHHHHHHHHHCCCHHHEEEEEC
Confidence 66789999999999999999999998877653
No 84
>cd01791 Ubl5 UBL5 ubiquitin-like modifier. UBL5 (also known as HUB1) is a ubiquitin-like modifier that is both widely expressed and highly phylogenetically conserved. At the C-terminal end of the ubiquitin-like fold of UBL5 is a di-tyrosine motif followed by a single variable residue instead of the characteristic di-glycine found in all other ubiquitin-like modifiers. ULB5 interacts with a cyclin-like kinase called CLK4 but not with other cyclin-like kinase family members.
Probab=44.85 E-value=41 Score=26.44 Aligned_cols=30 Identities=23% Similarity=0.403 Sum_probs=26.5
Q ss_pred eeccCCccHHHHHHHHHhhccCCcccEEEE
Q 018247 271 LCCRPTLSVRHLCQYVAHQTALQASEIEIY 300 (359)
Q Consensus 271 L~CrPTlsVkhLcqyvA~q~sl~~eEvEi~ 300 (359)
+.|.|+-||..|.+-||.+.+.+++..=|.
T Consensus 16 ~~v~~~~TV~~LK~~I~~~~~~~~~~qrLi 45 (73)
T cd01791 16 VKCNPDDTIGDLKKLIAAQTGTRPEKIVLK 45 (73)
T ss_pred EEeCCCCcHHHHHHHHHHHhCCChHHEEEE
Confidence 488999999999999999989999888664
No 85
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=44.45 E-value=15 Score=37.98 Aligned_cols=30 Identities=30% Similarity=0.703 Sum_probs=22.2
Q ss_pred CCCccccHHHHHHHHhcCCCCccccccccc
Q 018247 2 ECLHRFCRECIDKAMRLGNNECPACRTHCA 31 (359)
Q Consensus 2 ~CGHtFCR~CI~k~~~~~~~~CPvCR~~~~ 31 (359)
+||-..|+-|-..--..=+..||.||..+.
T Consensus 35 ~cgy~ic~fc~~~irq~lngrcpacrr~y~ 64 (480)
T COG5175 35 PCGYQICQFCYNNIRQNLNGRCPACRRKYD 64 (480)
T ss_pred CcccHHHHHHHHHHHhhccCCChHhhhhcc
Confidence 799999999965433222457999999874
No 86
>COG3492 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=43.96 E-value=11 Score=32.07 Aligned_cols=13 Identities=38% Similarity=0.943 Sum_probs=11.2
Q ss_pred cccHHHHHHHHhc
Q 018247 6 RFCRECIDKAMRL 18 (359)
Q Consensus 6 tFCR~CI~k~~~~ 18 (359)
-|||.|+..|.+.
T Consensus 42 gFCRNCLs~Wy~e 54 (104)
T COG3492 42 GFCRNCLSNWYRE 54 (104)
T ss_pred HHHHHHHHHHHHH
Confidence 4999999999863
No 87
>PTZ00044 ubiquitin; Provisional
Probab=43.86 E-value=26 Score=26.75 Aligned_cols=31 Identities=10% Similarity=0.258 Sum_probs=28.3
Q ss_pred eeccCCccHHHHHHHHHhhccCCcccEEEEE
Q 018247 271 LCCRPTLSVRHLCQYVAHQTALQASEIEIYL 301 (359)
Q Consensus 271 L~CrPTlsVkhLcqyvA~q~sl~~eEvEi~v 301 (359)
|...|+.||..|.+.|+.+++.++++.-|+.
T Consensus 15 l~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~ 45 (76)
T PTZ00044 15 FNFEPDNTVQQVKMALQEKEGIDVKQIRLIY 45 (76)
T ss_pred EEECCCCcHHHHHHHHHHHHCCCHHHeEEEE
Confidence 5677999999999999999999999998885
No 88
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=43.22 E-value=11 Score=42.62 Aligned_cols=28 Identities=11% Similarity=0.308 Sum_probs=21.3
Q ss_pred CCCccccHHHHHHHHhc-----CCCCccccccc
Q 018247 2 ECLHRFCRECIDKAMRL-----GNNECPACRTH 29 (359)
Q Consensus 2 ~CGHtFCR~CI~k~~~~-----~~~~CPvCR~~ 29 (359)
.|+|.||-.||..|.+. ....|+.|..-
T Consensus 120 ~~~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~C 152 (1134)
T KOG0825|consen 120 THVENQCPNCLKSCNDQLEESEKHTAHYFCEEC 152 (1134)
T ss_pred hhhhhhhhHHHHHHHHHhhccccccccccHHHH
Confidence 39999999999999864 13457777753
No 89
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=42.90 E-value=16 Score=33.76 Aligned_cols=23 Identities=22% Similarity=0.653 Sum_probs=19.3
Q ss_pred HHHHHHHHhc-CCCCccccccccc
Q 018247 9 RECIDKAMRL-GNNECPACRTHCA 31 (359)
Q Consensus 9 R~CI~k~~~~-~~~~CPvCR~~~~ 31 (359)
++|+.+|+.. +...||+|+.++.
T Consensus 36 ~sCL~rWi~~s~~~~CeiC~~~Y~ 59 (162)
T PHA02825 36 KECLEEWINTSKNKSCKICNGPYN 59 (162)
T ss_pred HHHHHHHHhcCCCCcccccCCeEE
Confidence 7899999876 4578999999864
No 90
>cd01802 AN1_N ubiquitin-like domain of AN1. AN1 (also known as ANUBL1 and RSD-7) is ubiquitin-like protein with a testis-specific expression in rats that has an N-terminal ubiquitin-like domain and a C-terminal zinc-binding domain. Unlike ubiquitin polyproteins and most ubiquitin fusion proteins, the N-terminal ubiquitin-like domain of An1 does not undergo proteolytic processing. The function of AN1 is unknown.
Probab=42.69 E-value=46 Score=27.90 Aligned_cols=32 Identities=9% Similarity=0.093 Sum_probs=28.5
Q ss_pred eeccCCccHHHHHHHHHhhccCCcccEEEEEE
Q 018247 271 LCCRPTLSVRHLCQYVAHQTALQASEIEIYLV 302 (359)
Q Consensus 271 L~CrPTlsVkhLcqyvA~q~sl~~eEvEi~v~ 302 (359)
|...|+.||..|++.|+...+.++++.-|+..
T Consensus 42 leV~~~~TV~~lK~kI~~~~gip~~~QrLi~~ 73 (103)
T cd01802 42 LRVSPFETVISVKAKIQRLEGIPVAQQHLIWN 73 (103)
T ss_pred EEeCCCCcHHHHHHHHHHHhCCChHHEEEEEC
Confidence 67889999999999999999999999888643
No 91
>cd01788 ElonginB Ubiquitin-like domain of Elongin B. Elongin B is part of an E3 ubiquitin ligase complex called VEC that activates ubiquitylation by the E2 ubiquitin-conjugating enzyme Ubc5. VEC is composed of von Hippel-Lindau tumor suppressor protein (pVHL), elongin C, cullin 2, NEDD8, and Rbx1. ElonginB binds elonginC to form the elonginBC complex which is a positive regulator of RNA polymerase II elongation factor Elongin A. The BC complex then binds VHL (von Hippel-Lindau) tumour suppressor protein to form a VCB ternary complex. Elongin B has a ubiquitin-llike domain.
Probab=40.57 E-value=26 Score=30.93 Aligned_cols=31 Identities=13% Similarity=0.188 Sum_probs=29.3
Q ss_pred ceeccCCccHHHHHHHHHhhccCCcccEEEE
Q 018247 270 YLCCRPTLSVRHLCQYVAHQTALQASEIEIY 300 (359)
Q Consensus 270 YL~CrPTlsVkhLcqyvA~q~sl~~eEvEi~ 300 (359)
|+-|+||-||-.|.+-|.-=+..++++-.+|
T Consensus 15 F~dakes~tVlelK~~iegI~k~pp~dQrL~ 45 (119)
T cd01788 15 FTDAKESTTVYELKRIVEGILKRPPEDQRLY 45 (119)
T ss_pred EeecCCcccHHHHHHHHHHHhcCChhHheee
Confidence 6889999999999999999999999999988
No 92
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=39.65 E-value=8 Score=30.35 Aligned_cols=30 Identities=23% Similarity=0.594 Sum_probs=16.8
Q ss_pred CCCccccHHHHHHHHhc--CC--------CCccccccccc
Q 018247 2 ECLHRFCRECIDKAMRL--GN--------NECPACRTHCA 31 (359)
Q Consensus 2 ~CGHtFCR~CI~k~~~~--~~--------~~CPvCR~~~~ 31 (359)
.|++.|=..||.+|+.. .. ..||.|+.++.
T Consensus 27 ~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~ 66 (70)
T PF11793_consen 27 SCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPIS 66 (70)
T ss_dssp T----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEE
T ss_pred ccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeee
Confidence 57888888999999863 11 24999999874
No 93
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=38.72 E-value=13 Score=43.86 Aligned_cols=28 Identities=25% Similarity=0.667 Sum_probs=24.3
Q ss_pred CCCccccHHHHHHHHhcCCCCcccccccc
Q 018247 2 ECLHRFCRECIDKAMRLGNNECPACRTHC 30 (359)
Q Consensus 2 ~CGHtFCR~CI~k~~~~~~~~CPvCR~~~ 30 (359)
.|||-||..|+.-|.+ ....||.|+.-+
T Consensus 1171 ~cgh~~c~~c~~~~l~-~~s~~~~~ksi~ 1198 (1394)
T KOG0298|consen 1171 GCGHEPCCRCDELWLY-ASSRCPICKSIK 1198 (1394)
T ss_pred eechhHhhhHHHHHHH-HhccCcchhhhh
Confidence 5999999999999988 567899999654
No 94
>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]
Probab=38.23 E-value=14 Score=40.84 Aligned_cols=47 Identities=28% Similarity=0.699 Sum_probs=32.5
Q ss_pred CCCCccccHHHHHHHHhc--CCCCcccccccccCCCCCCCChHHHHHHHH
Q 018247 1 MECLHRFCRECIDKAMRL--GNNECPACRTHCASRRSLRDDLNYDALIAA 48 (359)
Q Consensus 1 t~CGHtFCR~CI~k~~~~--~~~~CPvCR~~~~~~~~LRpn~~L~~Liek 48 (359)
+.|-|.||+.|+...+.. ....||+|+... ..+.++.-+...++++.
T Consensus 37 ~kc~~~~l~~~~n~~f~~~~~~~~~~lc~~~~-eK~s~~Es~r~sq~vqe 85 (684)
T KOG4362|consen 37 LKCDHIFLKFCLNKLFESKKGPKQCALCKSDI-EKRSLRESPRFSQLSKE 85 (684)
T ss_pred hhhhHHHHhhhhhceeeccCccccchhhhhhh-hhhhccccchHHHHHHH
Confidence 369999999999985432 356899999765 34455555555555553
No 95
>KOG3439 consensus Protein conjugation factor involved in autophagy [Posttranslational modification, protein turnover, chaperones]
Probab=38.12 E-value=42 Score=29.51 Aligned_cols=84 Identities=19% Similarity=0.273 Sum_probs=61.8
Q ss_pred CceeeEEEEeecCCCCCCCCCCCceeccCCccHHHHHHHHHhhccCCccc-EEEEEEeccccCCCCCCCCCCcccCCCcc
Q 018247 247 DQLDMHLVLVSLDEQRIPGLQQPYLCCRPTLSVRHLCQYVAHQTALQASE-IEIYLVKELHSKINLPSSSNSLMIDPCKD 325 (359)
Q Consensus 247 ~e~di~l~Lvs~d~q~iP~L~~PYL~CrPTlsVkhLcqyvA~q~sl~~eE-vEi~v~k~~~~~~~~~~~~~~~~~d~~~d 325 (359)
.+.+|+|. + --.+|-|++--...-||-+|.-+--|+-.+|.|++.| |=+||-. . +. |+.
T Consensus 29 ~kV~i~l~--a--iG~~PilK~~k~~i~~t~tfa~vi~Flkk~Lkl~as~slflYVN~----s--FA---------PsP- 88 (116)
T KOG3439|consen 29 RKVQIRLR--A--IGDAPILKKSKFKINPTQTFAKVILFLKKFLKLQASDSLFLYVNN----S--FA---------PSP- 88 (116)
T ss_pred ceEEEEEe--c--cCCCcceecceEEeCcchhhHHHHHHHHHHhCCcccCeEEEEEcC----c--cC---------CCc-
Confidence 45556653 2 3478999999999999999999999999999999655 5555522 1 11 233
Q ss_pred hhhhccccccccccccccCCCcceeehhhhhh
Q 018247 326 KLQVLNEQETLTGLQTQNLGHGFLLLAYQKIL 357 (359)
Q Consensus 326 ~le~L~~~~tl~~L~~~~~~~g~L~l~Y~~k~ 357 (359)
+++++.|+..-...|+|+|-|-.-.
T Consensus 89 -------Dq~v~~Ly~cf~~d~~Lvl~Yc~s~ 113 (116)
T KOG3439|consen 89 -------DQIVGNLYECFGTDGKLVLNYCISV 113 (116)
T ss_pred -------hhHHHHHHHhcCCCCEEEEEEeeec
Confidence 3567888888777889999997644
No 96
>PRK00647 hypothetical protein; Validated
Probab=37.22 E-value=29 Score=29.41 Aligned_cols=38 Identities=11% Similarity=0.140 Sum_probs=29.0
Q ss_pred CceeeEEEEeecCCCCCCCCCCCceeccCCccHHHHHHHHHhhccCCcccEEEE
Q 018247 247 DQLDMHLVLVSLDEQRIPGLQQPYLCCRPTLSVRHLCQYVAHQTALQASEIEIY 300 (359)
Q Consensus 247 ~e~di~l~Lvs~d~q~iP~L~~PYL~CrPTlsVkhLcqyvA~q~sl~~eEvEi~ 300 (359)
+.+.|.+.-.|.|++- =++|++|||.+++++...|+|.
T Consensus 27 ~~Lkvrv~ApPvdGKA----------------N~ali~~LAk~l~vpks~I~Iv 64 (96)
T PRK00647 27 GILKVRVTEVPEKGKA----------------NDAVIALLAKFLSLPKRDVTLI 64 (96)
T ss_pred CEEEEEEecCCCCChH----------------HHHHHHHHHHHhCCChhhEEEE
Confidence 4456666666666542 3799999999999999999985
No 97
>PF07975 C1_4: TFIIH C1-like domain; InterPro: IPR004595 All proteins in this domain for which functions are known are components of the TFIIH complex which is involved in the initiation of transcription and nucleotide excision repair. It includes the yeast transcription factor Ssl1 (Suppressor of stem-loop protein 1) that is essential for translation initiation and affects UV resistance. The C-terminal region is essential for transcription activity. This regions binds three zinc atoms through two independent domain. The first contains a C4 zinc finger motif, whereas the second is characterised by a CX(2)CX(2-4)FCADCD motif. The solution structure of the second C-terminal domain revealed homology with the regulatory domain of protein kinase C [].; GO: 0006281 DNA repair, 0005634 nucleus; PDB: 1Z60_A.
Probab=36.52 E-value=23 Score=26.77 Aligned_cols=25 Identities=28% Similarity=0.862 Sum_probs=11.5
Q ss_pred CCCccccHHHHHHHHhcCCCCccccc
Q 018247 2 ECLHRFCRECIDKAMRLGNNECPACR 27 (359)
Q Consensus 2 ~CGHtFCR~CI~k~~~~~~~~CPvCR 27 (359)
.|++.||.+|= -+.....-.||-|.
T Consensus 26 ~C~~~FC~dCD-~fiHE~LH~CPGC~ 50 (51)
T PF07975_consen 26 KCKNHFCIDCD-VFIHETLHNCPGCE 50 (51)
T ss_dssp TTT--B-HHHH-HTTTTTS-SSSTT-
T ss_pred CCCCccccCcC-hhhhccccCCcCCC
Confidence 58888888882 22222234588774
No 98
>PF02594 DUF167: Uncharacterised ACR, YggU family COG1872; InterPro: IPR003746 This entry describes proteins of unknown function. Structures for two of these proteins, YggU from Escherichia coli and MTH637 from the archaea Methanobacterium thermoautotrophicum, have been determined; they have a core 2-layer alpha/beta structure consisting of beta(2)-loop-alpha-beta(2)-alpha [, ].; PDB: 1YH5_A 1N91_A 1JRM_A.
Probab=36.32 E-value=31 Score=27.75 Aligned_cols=21 Identities=29% Similarity=0.506 Sum_probs=17.5
Q ss_pred HHHHHHHHhhccCCcccEEEE
Q 018247 280 RHLCQYVAHQTALQASEIEIY 300 (359)
Q Consensus 280 khLcqyvA~q~sl~~eEvEi~ 300 (359)
++|++|||..++++...|||.
T Consensus 43 ~ali~~La~~l~v~ks~i~i~ 63 (77)
T PF02594_consen 43 KALIRFLAKALGVPKSDIEIV 63 (77)
T ss_dssp HHHHHHHHHHCT--TTCEEEC
T ss_pred HHHHHHHHHHhCCCcccEEEE
Confidence 789999999999999999984
No 99
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=34.87 E-value=22 Score=41.26 Aligned_cols=30 Identities=33% Similarity=0.868 Sum_probs=24.1
Q ss_pred CCCccccHHHHHHHHhcCCCCccccccccc
Q 018247 2 ECLHRFCRECIDKAMRLGNNECPACRTHCA 31 (359)
Q Consensus 2 ~CGHtFCR~CI~k~~~~~~~~CPvCR~~~~ 31 (359)
+|+--.||.|-+=-.+.++..||+|++.+.
T Consensus 41 eC~FPVCrpCYEYEr~eG~q~CPqCktrYk 70 (1079)
T PLN02638 41 VCAFPVCRPCYEYERKDGNQSCPQCKTKYK 70 (1079)
T ss_pred cCCCccccchhhhhhhcCCccCCccCCchh
Confidence 688889999985444557889999999874
No 100
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=34.13 E-value=29 Score=25.46 Aligned_cols=23 Identities=26% Similarity=0.787 Sum_probs=17.7
Q ss_pred ccccHHHHHHHHhc-CCCCccccc
Q 018247 5 HRFCRECIDKAMRL-GNNECPACR 27 (359)
Q Consensus 5 HtFCR~CI~k~~~~-~~~~CPvCR 27 (359)
|.|=..|+.+|+.. ....||+|+
T Consensus 26 ~~vH~~Cl~~W~~~~~~~~C~iC~ 49 (49)
T smart00744 26 KYVHQECLERWINESGNKTCEICK 49 (49)
T ss_pred hHHHHHHHHHHHHHcCCCcCCCCC
Confidence 45558999999975 356899995
No 101
>KOG3113 consensus Uncharacterized conserved protein [Function unknown]
Probab=33.65 E-value=29 Score=34.48 Aligned_cols=40 Identities=10% Similarity=0.202 Sum_probs=27.7
Q ss_pred CCCccccHHHHHHHHhcCCCCcccccccccCCCCCCCChHHHH
Q 018247 2 ECLHRFCRECIDKAMRLGNNECPACRTHCASRRSLRDDLNYDA 44 (359)
Q Consensus 2 ~CGHtFCR~CI~k~~~~~~~~CPvCR~~~~~~~~LRpn~~L~~ 44 (359)
.|||.|--+=+.+. ....|++|...+.....+..|.+-.+
T Consensus 132 ~CGcV~SerAlKei---kas~C~~C~a~y~~~dvIvlNg~~E~ 171 (293)
T KOG3113|consen 132 CCGCVFSERALKEI---KASVCHVCGAAYQEDDVIVLNGTEED 171 (293)
T ss_pred ccceeccHHHHHHh---hhccccccCCcccccCeEeeCCCHHH
Confidence 69999987666654 24679999999865555555554433
No 102
>PLN02195 cellulose synthase A
Probab=33.15 E-value=25 Score=40.45 Aligned_cols=30 Identities=23% Similarity=0.726 Sum_probs=23.9
Q ss_pred CCCccccHHHHHHHHhcCCCCccccccccc
Q 018247 2 ECLHRFCRECIDKAMRLGNNECPACRTHCA 31 (359)
Q Consensus 2 ~CGHtFCR~CI~k~~~~~~~~CPvCR~~~~ 31 (359)
+|+--.||.|-+=--+.++..||+|++.+.
T Consensus 30 eC~~pvCrpCyeyer~eg~q~CpqCkt~Yk 59 (977)
T PLN02195 30 ECSYPLCKACLEYEIKEGRKVCLRCGGPYD 59 (977)
T ss_pred cCCCccccchhhhhhhcCCccCCccCCccc
Confidence 688889999984434447889999999884
No 103
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=32.78 E-value=22 Score=36.84 Aligned_cols=18 Identities=28% Similarity=0.707 Sum_probs=15.9
Q ss_pred CCCCccccHHHHHHHHhc
Q 018247 1 MECLHRFCRECIDKAMRL 18 (359)
Q Consensus 1 t~CGHtFCR~CI~k~~~~ 18 (359)
+.|||.||..|+..++..
T Consensus 87 ~~c~H~~c~~cw~~yl~~ 104 (444)
T KOG1815|consen 87 LGCGHPFCPPCWTGYLGT 104 (444)
T ss_pred cCCCcHHHHHHHHHHhhh
Confidence 479999999999999864
No 104
>PLN02189 cellulose synthase
Probab=32.55 E-value=25 Score=40.76 Aligned_cols=30 Identities=37% Similarity=0.901 Sum_probs=24.2
Q ss_pred CCCccccHHHHHHHHhcCCCCccccccccc
Q 018247 2 ECLHRFCRECIDKAMRLGNNECPACRTHCA 31 (359)
Q Consensus 2 ~CGHtFCR~CI~k~~~~~~~~CPvCR~~~~ 31 (359)
+|+--.||.|-+--.+.++..||+|++.+.
T Consensus 58 ~C~fpvCr~Cyeyer~eg~q~CpqCkt~Y~ 87 (1040)
T PLN02189 58 ECGFPVCRPCYEYERREGTQNCPQCKTRYK 87 (1040)
T ss_pred cCCCccccchhhhhhhcCCccCcccCCchh
Confidence 588889999985445557889999999874
No 105
>PLN02436 cellulose synthase A
Probab=31.92 E-value=25 Score=40.84 Aligned_cols=30 Identities=40% Similarity=0.963 Sum_probs=24.3
Q ss_pred CCCccccHHHHHHHHhcCCCCccccccccc
Q 018247 2 ECLHRFCRECIDKAMRLGNNECPACRTHCA 31 (359)
Q Consensus 2 ~CGHtFCR~CI~k~~~~~~~~CPvCR~~~~ 31 (359)
+|+--.||.|.+--.+.++..||+|++.+.
T Consensus 60 ~C~fpvCr~Cyeyer~eg~~~Cpqckt~Y~ 89 (1094)
T PLN02436 60 ECAFPVCRPCYEYERREGNQACPQCKTRYK 89 (1094)
T ss_pred cCCCccccchhhhhhhcCCccCcccCCchh
Confidence 588889999995445557889999999874
No 106
>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=31.40 E-value=50 Score=36.79 Aligned_cols=24 Identities=29% Similarity=0.917 Sum_probs=18.5
Q ss_pred CCCCccccHHHHHHHHhcCCCCcccccc
Q 018247 1 MECLHRFCRECIDKAMRLGNNECPACRT 28 (359)
Q Consensus 1 t~CGHtFCR~CI~k~~~~~~~~CPvCR~ 28 (359)
+-|||+.|+.|++... +..|| |..
T Consensus 31 l~cghtic~~c~~~ly---n~scp-~~~ 54 (861)
T KOG3161|consen 31 LQCGHTICGHCVQLLY---NASCP-TKR 54 (861)
T ss_pred ccccchHHHHHHHhHh---hccCC-CCc
Confidence 3699999999999864 34688 554
No 107
>KOG0006 consensus E3 ubiquitin-protein ligase (Parkin protein) [Posttranslational modification, protein turnover, chaperones]
Probab=30.60 E-value=45 Score=34.32 Aligned_cols=28 Identities=18% Similarity=0.299 Sum_probs=24.7
Q ss_pred CccHHHHHHHHHhhccCCcccEEEEEEe
Q 018247 276 TLSVRHLCQYVAHQTALQASEIEIYLVK 303 (359)
Q Consensus 276 TlsVkhLcqyvA~q~sl~~eEvEi~v~k 303 (359)
+-+|++|.+.||.|+++|+++++|..-.
T Consensus 23 ~t~I~~lke~Vak~~gvp~D~L~viFaG 50 (446)
T KOG0006|consen 23 DTSIFQLKEVVAKRQGVPADQLRVIFAG 50 (446)
T ss_pred CCCHHHHHHHHHHhhCCChhheEEEEec
Confidence 4499999999999999999999986644
No 108
>PF10497 zf-4CXXC_R1: Zinc-finger domain of monoamine-oxidase A repressor R1; InterPro: IPR018866 R1 is a transcription factor repressor that inhibits monoamine oxidase A gene expression. This domain is a four-CXXC zinc finger putative DNA-binding domain found at the C-terminal end of R1. The domain carries 12 cysteines of which four pairs are of the CXXC type [].
Probab=30.28 E-value=84 Score=26.71 Aligned_cols=28 Identities=32% Similarity=0.816 Sum_probs=20.5
Q ss_pred CccccHHHHHHHHhc--------CCCCccccccccc
Q 018247 4 LHRFCRECIDKAMRL--------GNNECPACRTHCA 31 (359)
Q Consensus 4 GHtFCR~CI~k~~~~--------~~~~CPvCR~~~~ 31 (359)
.-.||..||...... ..-.||.||--+.
T Consensus 37 ~~~fC~~CL~~ryge~~~ev~~~~~W~CP~CrgiCn 72 (105)
T PF10497_consen 37 RGKFCGGCLRNRYGENVEEVLEDPNWKCPKCRGICN 72 (105)
T ss_pred cceehHhHHHHHHhhhHHHHhcCCceECCCCCCeeC
Confidence 668999999875432 2346999998654
No 109
>PF14560 Ubiquitin_2: Ubiquitin-like domain; PDB: 1WJN_A 2KJ6_A 2KJR_A 1V6E_A 1T0Y_A.
Probab=29.25 E-value=98 Score=24.55 Aligned_cols=34 Identities=18% Similarity=0.250 Sum_probs=28.6
Q ss_pred eeccCCccHHHHHHHHHhhccCCcccEEEEEEec
Q 018247 271 LCCRPTLSVRHLCQYVAHQTALQASEIEIYLVKE 304 (359)
Q Consensus 271 L~CrPTlsVkhLcqyvA~q~sl~~eEvEi~v~k~ 304 (359)
....+++||..|++-|...++.+++...|++..+
T Consensus 18 kr~~~~~Tv~eLK~kl~~~~Gi~~~~m~L~l~~~ 51 (87)
T PF14560_consen 18 KRFPKSITVSELKQKLEKLTGIPPSDMRLQLKSD 51 (87)
T ss_dssp EEEETTSBHHHHHHHHHHHHTS-TTTEEEEEE-T
T ss_pred EEcCCCCCHHHHHHHHHHHhCCCcccEEEEEEec
Confidence 3455899999999999999999999999999743
No 110
>cd01812 BAG1_N Ubiquitin-like domain of BAG1. BAG1_N N-terminal ubiquitin-like (Ubl) domain of the BAG1 protein. This domain occurs together with the BAG domain and is closely related to the Ubl domain of a family of deubiquitinases that includes Rpn11, UBP6 (USP14), USP7 (HAUSP).
Probab=28.51 E-value=70 Score=23.77 Aligned_cols=32 Identities=13% Similarity=0.190 Sum_probs=28.0
Q ss_pred eeccCCccHHHHHHHHHhhccCCcccEEEEEE
Q 018247 271 LCCRPTLSVRHLCQYVAHQTALQASEIEIYLV 302 (359)
Q Consensus 271 L~CrPTlsVkhLcqyvA~q~sl~~eEvEi~v~ 302 (359)
+...|+.||..|.+.|+.+++++++..-|+..
T Consensus 14 i~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~ 45 (71)
T cd01812 14 LSISSQATFGDLKKMLAPVTGVEPRDQKLIFK 45 (71)
T ss_pred EEECCCCcHHHHHHHHHHhhCCChHHeEEeeC
Confidence 45568899999999999999999999988864
No 111
>PF11976 Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; InterPro: IPR022617 This entry includes small ubiquitin-related modifier (SUMO) proteins. SUMOs are small proteins that are covalently attached to lysines as post-translational modifications and are used to control multiple cellular process including signal transduction, nuclear transport and DNA replication and repair []. Unlike ubiquitin, they are not involved in protein degradation. This entry also contains the C-terminal Rad60 DNA repair protein SUMO-like domain.; PDB: 3RD2_A 2JXX_A 3RCZ_A 3GOE_A 3A4S_D 3A4R_B 2IO1_D 1U4A_A 2K1F_A 1WZ0_A ....
Probab=28.44 E-value=1.1e+02 Score=22.85 Aligned_cols=50 Identities=16% Similarity=0.246 Sum_probs=39.5
Q ss_pred eEEEEeecCCCCCCCCCCCceeccCCccHHHHHHHHHhhccCCc-ccEEEEEEeccc
Q 018247 251 MHLVLVSLDEQRIPGLQQPYLCCRPTLSVRHLCQYVAHQTALQA-SEIEIYLVKELH 306 (359)
Q Consensus 251 i~l~Lvs~d~q~iP~L~~PYL~CrPTlsVkhLcqyvA~q~sl~~-eEvEi~v~k~~~ 306 (359)
|.|.|...+++.+ ++...|+-+|+-|-+..+.+.++++ +.+-++.-++..
T Consensus 1 I~i~v~~~~~~~~------~~~v~~~~~~~~l~~~~~~~~~i~~~~~~~l~fdG~~L 51 (72)
T PF11976_consen 1 ITIKVRSQDGKEI------KFKVKPTTTVSKLIEKYCEKKGIPPEESIRLIFDGKRL 51 (72)
T ss_dssp EEEEEEETTSEEE------EEEEETTSCCHHHHHHHHHHHTTTT-TTEEEEETTEEE
T ss_pred CEEEEEeCCCCEE------EEEECCCCcHHHHHHHHHHhhCCCccceEEEEECCEEc
Confidence 4456666665533 4677899999999999999999998 999988877554
No 112
>KOG4495 consensus RNA polymerase II transcription elongation factor Elongin/SIII, subunit elongin B [Transcription]
Probab=28.38 E-value=59 Score=28.08 Aligned_cols=33 Identities=12% Similarity=0.133 Sum_probs=30.7
Q ss_pred ceeccCCccHHHHHHHHHhhccCCcccEEEEEE
Q 018247 270 YLCCRPTLSVRHLCQYVAHQTALQASEIEIYLV 302 (359)
Q Consensus 270 YL~CrPTlsVkhLcqyvA~q~sl~~eEvEi~v~ 302 (359)
|+-|.|+-||=.|.+-|+--+..++.+-++|.-
T Consensus 15 f~da~es~tV~elK~~l~gi~~~Pvn~qrL~km 47 (110)
T KOG4495|consen 15 FTDAKESSTVFELKRKLEGILKRPVNEQRLYKM 47 (110)
T ss_pred EeecCccccHHHHHHHHHHHHhCCCcchheeec
Confidence 789999999999999999999999999999873
No 113
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=27.90 E-value=26 Score=39.86 Aligned_cols=24 Identities=25% Similarity=0.840 Sum_probs=19.9
Q ss_pred CCCccccHHHHHHHHhcCCCCccccccc
Q 018247 2 ECLHRFCRECIDKAMRLGNNECPACRTH 29 (359)
Q Consensus 2 ~CGHtFCR~CI~k~~~~~~~~CPvCR~~ 29 (359)
-|||.|=+.|.. .....||.|+..
T Consensus 858 ~CgHsyHqhC~e----~~~~~CP~C~~e 881 (933)
T KOG2114|consen 858 LCGHSYHQHCLE----DKEDKCPKCLPE 881 (933)
T ss_pred ecccHHHHHhhc----cCcccCCccchh
Confidence 499999999998 235689999984
No 114
>PRK01310 hypothetical protein; Validated
Probab=27.88 E-value=53 Score=28.10 Aligned_cols=37 Identities=16% Similarity=0.229 Sum_probs=28.7
Q ss_pred ceeeEEEEeecCCCCCCCCCCCceeccCCccHHHHHHHHHhhccCCcccEEEE
Q 018247 248 QLDMHLVLVSLDEQRIPGLQQPYLCCRPTLSVRHLCQYVAHQTALQASEIEIY 300 (359)
Q Consensus 248 e~di~l~Lvs~d~q~iP~L~~PYL~CrPTlsVkhLcqyvA~q~sl~~eEvEi~ 300 (359)
.+.|.++=.|.|++- =++|+.|||..++++-.+|||.
T Consensus 39 ~lkv~v~apPv~GkA----------------N~ali~~LA~~l~v~ks~I~iv 75 (104)
T PRK01310 39 VLKVRVRAVPEGGEA----------------NRALIELLAKALGVPKSSVRLL 75 (104)
T ss_pred EEEEEEecCCCCChH----------------HHHHHHHHHHHhCCChhhEEEE
Confidence 455666666666552 3799999999999999999985
No 115
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=27.59 E-value=18 Score=34.77 Aligned_cols=29 Identities=31% Similarity=0.670 Sum_probs=23.6
Q ss_pred CCccccHHHHHHHHhcCCCCccccccccc
Q 018247 3 CLHRFCRECIDKAMRLGNNECPACRTHCA 31 (359)
Q Consensus 3 CGHtFCR~CI~k~~~~~~~~CPvCR~~~~ 31 (359)
|||+-|..||..-+....-.||.|+...-
T Consensus 239 c~htlc~~c~~~~l~~~~~~cp~~~~~~~ 267 (296)
T KOG4185|consen 239 EGHTLCKECIDTILLQAGIKCPFCTWSHI 267 (296)
T ss_pred HHHHHHhcchHHHHHHhhhcCCcccceee
Confidence 99999999999976543467999998653
No 116
>PLN02915 cellulose synthase A [UDP-forming], catalytic subunit
Probab=27.05 E-value=35 Score=39.60 Aligned_cols=30 Identities=30% Similarity=0.730 Sum_probs=24.3
Q ss_pred CCCccccHHHHHHHHhcCCCCccccccccc
Q 018247 2 ECLHRFCRECIDKAMRLGNNECPACRTHCA 31 (359)
Q Consensus 2 ~CGHtFCR~CI~k~~~~~~~~CPvCR~~~~ 31 (359)
+|+--.||.|.+--.+.++..||+|++.+.
T Consensus 39 eC~fpvCr~cyeye~~~g~~~cp~c~t~y~ 68 (1044)
T PLN02915 39 VCGFPVCKPCYEYERSEGNQCCPQCNTRYK 68 (1044)
T ss_pred cCCCccccchhhhhhhcCCccCCccCCchh
Confidence 688889999995445557889999999874
No 117
>PRK05090 hypothetical protein; Validated
Probab=26.95 E-value=56 Score=27.55 Aligned_cols=39 Identities=26% Similarity=0.381 Sum_probs=31.0
Q ss_pred cCceeeEEEEeecCCCCCCCCCCCceeccCCccHHHHHHHHHhhccCCcccEEEE
Q 018247 246 DDQLDMHLVLVSLDEQRIPGLQQPYLCCRPTLSVRHLCQYVAHQTALQASEIEIY 300 (359)
Q Consensus 246 d~e~di~l~Lvs~d~q~iP~L~~PYL~CrPTlsVkhLcqyvA~q~sl~~eEvEi~ 300 (359)
++.|.|.+.-.|.|++- =++|++|+|..++++...|+|.
T Consensus 31 ~~~lkv~v~ApPveGkA----------------N~ali~~LAk~l~v~ks~I~i~ 69 (95)
T PRK05090 31 GDELKVAITAPPVDGQA----------------NAHLLKFLAKQFRVAKSQVVIE 69 (95)
T ss_pred CCEEEEEEecCCCCChH----------------HHHHHHHHHHHhCCChhhEEEE
Confidence 34567777777777653 3799999999999999999985
No 118
>cd01808 hPLIC_N Ubiquitin-like domain of hPLIC-1 and hPLIC2. hPLIC-1 and hPLIC-2 (human homologs of the yeast ubiquitin-like Dsk2 protein) are type2 UBL's (ubiquitin-like) proteins that are thought to serve as adaptors that link the ubiquitination machinery to the proteasome. The hPLIC's have an N-terminal UBL domain that binds the S5a subunit of the proteasome and a C-terminal UBA (ubiquitin-associated) domain that binds a ubiquitylated protein.
Probab=26.72 E-value=73 Score=24.19 Aligned_cols=30 Identities=10% Similarity=0.135 Sum_probs=26.4
Q ss_pred eeccCCccHHHHHHHHHhhccCCcccEEEE
Q 018247 271 LCCRPTLSVRHLCQYVAHQTALQASEIEIY 300 (359)
Q Consensus 271 L~CrPTlsVkhLcqyvA~q~sl~~eEvEi~ 300 (359)
+...|+.||..|.+-||.+.+.++++.-+.
T Consensus 14 l~v~~~~TV~~lK~~I~~~~~i~~~~~~Li 43 (71)
T cd01808 14 IEIAEDASVKDFKEAVSKKFKANQEQLVLI 43 (71)
T ss_pred EEECCCChHHHHHHHHHHHhCCCHHHEEEE
Confidence 677899999999999999999888887763
No 119
>KOG4021 consensus Mitochondrial ribosomal protein S18b [Translation, ribosomal structure and biogenesis]
Probab=25.95 E-value=32 Score=33.08 Aligned_cols=22 Identities=41% Similarity=0.872 Sum_probs=15.5
Q ss_pred HHHHHHHHhcCCCCcccccccc
Q 018247 9 RECIDKAMRLGNNECPACRTHC 30 (359)
Q Consensus 9 R~CI~k~~~~~~~~CPvCR~~~ 30 (359)
+.||.+.-..-.+.||+||-+.
T Consensus 97 ktCIrkn~~~~gnpCPICRDey 118 (239)
T KOG4021|consen 97 KTCIRKNGRFLGNPCPICRDEY 118 (239)
T ss_pred hHHHhhcCeecCCCCCccccce
Confidence 4688876432346799999874
No 120
>PF14552 Tautomerase_2: Tautomerase enzyme; PDB: 2AAG_C 2AAL_A 2AAJ_A 1MWW_C.
Probab=25.66 E-value=79 Score=25.66 Aligned_cols=27 Identities=22% Similarity=0.386 Sum_probs=18.8
Q ss_pred HHHHHHHHHhhccCCcccEEEEEEecc
Q 018247 279 VRHLCQYVAHQTALQASEIEIYLVKEL 305 (359)
Q Consensus 279 VkhLcqyvA~q~sl~~eEvEi~v~k~~ 305 (359)
.+.|.+.|+.++++.+++|.|.|+-..
T Consensus 49 y~~l~~~L~~~~gi~p~Dv~I~l~e~~ 75 (82)
T PF14552_consen 49 YRALAERLAEKLGIRPEDVMIVLVENP 75 (82)
T ss_dssp HHHHHHHHHHHH---GGGEEEEEEEE-
T ss_pred HHHHHHHHHHHcCCCHHHEEEEEEECC
Confidence 356777888889999999999998644
No 121
>PLN02248 cellulose synthase-like protein
Probab=25.24 E-value=44 Score=39.10 Aligned_cols=28 Identities=32% Similarity=0.898 Sum_probs=24.0
Q ss_pred CCCccccHHHHHHHHhcCCCCcccccccc
Q 018247 2 ECLHRFCRECIDKAMRLGNNECPACRTHC 30 (359)
Q Consensus 2 ~CGHtFCR~CI~k~~~~~~~~CPvCR~~~ 30 (359)
+|++..||+|-...... ...||-|++++
T Consensus 149 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 176 (1135)
T PLN02248 149 ECGFKICRDCYIDAVKS-GGICPGCKEPY 176 (1135)
T ss_pred cccchhHHhHhhhhhhc-CCCCCCCcccc
Confidence 68999999999988874 56899999986
No 122
>PF10083 DUF2321: Uncharacterized protein conserved in bacteria (DUF2321); InterPro: IPR016891 This entry is represented by Bacteriophage 'Lactobacillus prophage Lj928', Orf-Ljo1454. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=25.07 E-value=36 Score=31.39 Aligned_cols=45 Identities=27% Similarity=0.553 Sum_probs=28.7
Q ss_pred ccccHHHHHHHHhcCCCCcccccccccCCCC------CC---CChHHHHHHHHHCCCh
Q 018247 5 HRFCRECIDKAMRLGNNECPACRTHCASRRS------LR---DDLNYDALIAALYPDI 53 (359)
Q Consensus 5 HtFCR~CI~k~~~~~~~~CPvCR~~~~~~~~------LR---pn~~L~~Liekl~P~l 53 (359)
+.||..|=.+-+. .||.|..++...-+ +. .-+.+..-..+-||+-
T Consensus 28 ~~fC~kCG~~tI~----~Cp~C~~~IrG~y~v~gv~~~g~~~~~PsYC~~CGkpyPWt 81 (158)
T PF10083_consen 28 EKFCSKCGAKTIT----SCPNCSTPIRGDYHVEGVFGLGGHYEAPSYCHNCGKPYPWT 81 (158)
T ss_pred HHHHHHhhHHHHH----HCcCCCCCCCCceecCCeeeeCCCCCCChhHHhCCCCCchH
Confidence 5699999888776 59999998643211 11 1234455555667774
No 123
>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=24.45 E-value=44 Score=32.91 Aligned_cols=32 Identities=22% Similarity=0.665 Sum_probs=25.0
Q ss_pred CCCCccccHHHHHHHHhc-------CCCCcccccccccC
Q 018247 1 MECLHRFCRECIDKAMRL-------GNNECPACRTHCAS 32 (359)
Q Consensus 1 t~CGHtFCR~CI~k~~~~-------~~~~CPvCR~~~~~ 32 (359)
+-|-|.|=-+|+..+... ....||-|..++-+
T Consensus 68 LvCyhlfHW~ClneraA~lPanTAPaGyqCP~Cs~eiFP 106 (299)
T KOG3970|consen 68 LVCYHLFHWKCLNERAANLPANTAPAGYQCPCCSQEIFP 106 (299)
T ss_pred ehhhhhHHHHHhhHHHhhCCCcCCCCcccCCCCCCccCC
Confidence 359999999999998643 24679999998643
No 124
>PF06869 DUF1258: Protein of unknown function (DUF1258); InterPro: IPR009667 This family represents a conserved region approximately 260 residues long within a number of hypothetical proteins of unknown function that seem to be specific to Caenorhabditis elegans. Note that this family contains a number of conserved cysteine and histidine residues.
Probab=24.42 E-value=39 Score=33.41 Aligned_cols=52 Identities=19% Similarity=0.378 Sum_probs=31.5
Q ss_pred CccccHHHHHHHHhcCCCCcc--cccccccCCCCCCCChHHHHHHHHHCCChHHHHH
Q 018247 4 LHRFCRECIDKAMRLGNNECP--ACRTHCASRRSLRDDLNYDALIAALYPDIDKYEE 58 (359)
Q Consensus 4 GHtFCR~CI~k~~~~~~~~CP--vCR~~~~~~~~LRpn~~L~~Liekl~P~l~~~e~ 58 (359)
-|.||-.|.. ... ....|- .|.....- --+..-.+|.+|++.++++|.+-.+
T Consensus 17 ~h~~CN~CG~-~~~-~~~kC~~c~~~~vakf-vRig~~~QL~dLV~~y~~~Il~ir~ 70 (258)
T PF06869_consen 17 THFICNSCGK-VVE-SNEKCSCCGCGPVAKF-VRIGGFSQLQDLVEQYLEDILEIRE 70 (258)
T ss_pred eehhhhhhhh-hhc-cCceeeccCCCccEEE-EEEcHHHHHHHHHHHHHHHHHHHHH
Confidence 3899999998 333 233454 44443210 1123446889999998888766543
No 125
>cd01810 ISG15_repeat2 ISG15 ubiquitin-like protein, second repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains and becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=24.38 E-value=85 Score=24.07 Aligned_cols=31 Identities=23% Similarity=0.201 Sum_probs=27.9
Q ss_pred eeccCCccHHHHHHHHHhhccCCcccEEEEE
Q 018247 271 LCCRPTLSVRHLCQYVAHQTALQASEIEIYL 301 (359)
Q Consensus 271 L~CrPTlsVkhLcqyvA~q~sl~~eEvEi~v 301 (359)
|.+.|+.||..|.+.|+...+.++++.-|+.
T Consensus 13 l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~ 43 (74)
T cd01810 13 YEVQLTQTVATLKQQVSQRERVQADQFWLSF 43 (74)
T ss_pred EEECCcChHHHHHHHHHHHhCCCHHHeEEEE
Confidence 6778999999999999999999999988763
No 126
>cd01792 ISG15_repeat1 ISG15 ubiquitin-like protein, first repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains that becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=24.11 E-value=1.4e+02 Score=23.30 Aligned_cols=45 Identities=18% Similarity=0.207 Sum_probs=34.0
Q ss_pred eEEEEeecCCCCCCCCCCCceeccCCccHHHHHHHHHhhccCCcccEEEEE
Q 018247 251 MHLVLVSLDEQRIPGLQQPYLCCRPTLSVRHLCQYVAHQTALQASEIEIYL 301 (359)
Q Consensus 251 i~l~Lvs~d~q~iP~L~~PYL~CrPTlsVkhLcqyvA~q~sl~~eEvEi~v 301 (359)
+.|.+..+.++.+. +.-.|+.||..|.+-||.+.+++++..-|+.
T Consensus 3 ~~i~Vk~~~G~~~~------~~v~~~~TV~~lK~~I~~~~~i~~~~qrL~~ 47 (80)
T cd01792 3 WDLKVKMLGGNEFL------VSLRDSMTVSELKQQIAQKIGVPAFQQRLAH 47 (80)
T ss_pred eEEEEEeCCCCEEE------EEcCCCCcHHHHHHHHHHHhCCCHHHEEEEe
Confidence 34444556666543 3556889999999999999999999888864
No 127
>PRK01530 hypothetical protein; Reviewed
Probab=23.62 E-value=66 Score=27.63 Aligned_cols=38 Identities=21% Similarity=0.311 Sum_probs=28.9
Q ss_pred CceeeEEEEeecCCCCCCCCCCCceeccCCccHHHHHHHHHhhccCCcccEEEE
Q 018247 247 DQLDMHLVLVSLDEQRIPGLQQPYLCCRPTLSVRHLCQYVAHQTALQASEIEIY 300 (359)
Q Consensus 247 ~e~di~l~Lvs~d~q~iP~L~~PYL~CrPTlsVkhLcqyvA~q~sl~~eEvEi~ 300 (359)
+.|-|.+.-.|.|++- =++|++|+|..++++...|+|.
T Consensus 39 ~~Lki~v~ApPvdGkA----------------N~ali~~LAk~l~v~ks~I~Iv 76 (105)
T PRK01530 39 PYLKLSIKAIPEQGKA----------------NEEIINYLAKEWKLSRSNIEII 76 (105)
T ss_pred CEEEEEEecCCCCChH----------------HHHHHHHHHHHhCCChhhEEEE
Confidence 3455666666666542 3799999999999999999984
No 128
>PF13240 zinc_ribbon_2: zinc-ribbon domain
Probab=23.00 E-value=14 Score=23.35 Aligned_cols=22 Identities=27% Similarity=0.739 Sum_probs=10.8
Q ss_pred ccHHHHHHHHhcCCCCccccccc
Q 018247 7 FCRECIDKAMRLGNNECPACRTH 29 (359)
Q Consensus 7 FCR~CI~k~~~~~~~~CPvCR~~ 29 (359)
||..|=.+..+ +...||.|..+
T Consensus 1 ~Cp~CG~~~~~-~~~fC~~CG~~ 22 (23)
T PF13240_consen 1 YCPNCGAEIED-DAKFCPNCGTP 22 (23)
T ss_pred CCcccCCCCCC-cCcchhhhCCc
Confidence 45555333322 34567777654
No 129
>PLN02400 cellulose synthase
Probab=22.58 E-value=36 Score=39.68 Aligned_cols=30 Identities=33% Similarity=0.855 Sum_probs=23.4
Q ss_pred CCCccccHHHHHHHHhcCCCCccccccccc
Q 018247 2 ECLHRFCRECIDKAMRLGNNECPACRTHCA 31 (359)
Q Consensus 2 ~CGHtFCR~CI~k~~~~~~~~CPvCR~~~~ 31 (359)
+|+--.||.|-+=-.+.++..||+|++.+.
T Consensus 60 eCaFPVCRpCYEYERkeGnq~CPQCkTrYk 89 (1085)
T PLN02400 60 ECAFPVCRPCYEYERKDGTQCCPQCKTRYR 89 (1085)
T ss_pred cCCCccccchhheecccCCccCcccCCccc
Confidence 588888999984334446789999999874
No 130
>PRK04179 rpl37e 50S ribosomal protein L37e; Reviewed
Probab=22.16 E-value=23 Score=27.98 Aligned_cols=25 Identities=28% Similarity=0.619 Sum_probs=21.4
Q ss_pred CccccHHHHHHHHhcCCCCcccccc
Q 018247 4 LHRFCRECIDKAMRLGNNECPACRT 28 (359)
Q Consensus 4 GHtFCR~CI~k~~~~~~~~CPvCR~ 28 (359)
-|++|+.|=...+..+...|-.|--
T Consensus 16 tHt~CrRCG~~syh~qK~~CasCGy 40 (62)
T PRK04179 16 THIRCRRCGRHSYNVRKKYCAACGF 40 (62)
T ss_pred ccchhcccCcccccccccchhhcCC
Confidence 4999999998887767788999987
No 131
>KOG3663 consensus Nuclear factor I [Transcription]
Probab=21.71 E-value=1.1e+02 Score=32.54 Aligned_cols=56 Identities=32% Similarity=0.555 Sum_probs=39.6
Q ss_pred HHHhhhhhcccCceeeEEEE----eec---CCCC---CCCCCCCceeccC---CccHHHHHHHHHhhccC
Q 018247 236 VDYLQSLEEKDDQLDMHLVL----VSL---DEQR---IPGLQQPYLCCRP---TLSVRHLCQYVAHQTAL 292 (359)
Q Consensus 236 vd~L~~~~e~d~e~di~l~L----vs~---d~q~---iP~L~~PYL~CrP---TlsVkhLcqyvA~q~sl 292 (359)
+|.||.+|-- =.||+-.++ +|| |+++ -|.--.|-||..| ++|||.|==|+|-++.-
T Consensus 117 IDCLRQADKV-WRLDLVmVILFKgIPLESTDGERL~ksp~C~hP~LCVqPhHi~VsVkeLDlylAyfv~~ 185 (518)
T KOG3663|consen 117 IDCLRQADKV-WRLDLVMVILFKGIPLESTDGERLEKSPQCSHPGLCVQPHHIGVSVKELDLYLAYFVHT 185 (518)
T ss_pred hhhhhhhchh-eeeeeeeEEeecccccccCchhhhhcCcccCCCccccccceeeeeehhhhHHHHHHhhc
Confidence 6999986531 123433322 244 5664 5778889999999 89999999999988753
No 132
>PF04423 Rad50_zn_hook: Rad50 zinc hook motif; InterPro: IPR007517 The Mre11 complex (Mre11 Rad50 Nbs1) is central to chromosomal maintenance and functions in homologous recombination, telomere maintenance and sister chromatid association. The Rad50 coiled-coil region contains a dimer interface at the apex of the coiled coils in which pairs of conserved Cys-X-X-Cys motifs form interlocking hooks that bind one Zn ion. This alignment includes the zinc hook motif and a short stretch of coiled-coil on either side.; GO: 0004518 nuclease activity, 0005524 ATP binding, 0008270 zinc ion binding, 0006281 DNA repair; PDB: 1L8D_B.
Probab=21.67 E-value=33 Score=25.26 Aligned_cols=10 Identities=30% Similarity=0.743 Sum_probs=5.6
Q ss_pred Cccccccccc
Q 018247 22 ECPACRTHCA 31 (359)
Q Consensus 22 ~CPvCR~~~~ 31 (359)
.||+|..+|.
T Consensus 22 ~CPlC~r~l~ 31 (54)
T PF04423_consen 22 CCPLCGRPLD 31 (54)
T ss_dssp E-TTT--EE-
T ss_pred cCCCCCCCCC
Confidence 8999999985
No 133
>COG4640 Predicted membrane protein [Function unknown]
Probab=21.65 E-value=35 Score=35.87 Aligned_cols=39 Identities=21% Similarity=0.539 Sum_probs=24.7
Q ss_pred cccHHHHHHHHhcCCCCcccccccccCCCCCCCChHHHHHH
Q 018247 6 RFCRECIDKAMRLGNNECPACRTHCASRRSLRDDLNYDALI 46 (359)
Q Consensus 6 tFCR~CI~k~~~~~~~~CPvCR~~~~~~~~LRpn~~L~~Li 46 (359)
.||..|=.+...... .||+|..++..+. -..+..+.+++
T Consensus 2 ~fC~kcG~qk~Ed~~-qC~qCG~~~t~~~-sqan~~tn~i~ 40 (465)
T COG4640 2 KFCPKCGSQKAEDDV-QCTQCGHKFTSRQ-SQANKSTNEII 40 (465)
T ss_pred Ccccccccccccccc-cccccCCcCCchh-hhhhHHHHHHH
Confidence 599999766555333 4999999986543 33444444444
No 134
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=21.63 E-value=28 Score=34.53 Aligned_cols=28 Identities=39% Similarity=1.130 Sum_probs=24.2
Q ss_pred CCCccccHHHHHHHHhcCCCCcc--ccccc
Q 018247 2 ECLHRFCRECIDKAMRLGNNECP--ACRTH 29 (359)
Q Consensus 2 ~CGHtFCR~CI~k~~~~~~~~CP--vCR~~ 29 (359)
+|-|..|-+|+.+-+..+...|| -|..-
T Consensus 33 ECyHrmCESCvdRIFs~GpAqCP~~gC~kI 62 (314)
T COG5220 33 ECYHRMCESCVDRIFSRGPAQCPYKGCGKI 62 (314)
T ss_pred HHHHHHHHHHHHHHhcCCCCCCCCccHHHH
Confidence 49999999999998877888999 78764
No 135
>KOG3002 consensus Zn finger protein [General function prediction only]
Probab=21.47 E-value=28 Score=34.86 Aligned_cols=24 Identities=38% Similarity=0.830 Sum_probs=19.3
Q ss_pred CccccHHHHHHHHhcCCCCccccccccc
Q 018247 4 LHRFCRECIDKAMRLGNNECPACRTHCA 31 (359)
Q Consensus 4 GHtFCR~CI~k~~~~~~~~CPvCR~~~~ 31 (359)
||.-|-.|=.+. .+.||.|+.++.
T Consensus 68 GHlaCssC~~~~----~~~CP~Cr~~~g 91 (299)
T KOG3002|consen 68 GHLACSSCRTKV----SNKCPTCRLPIG 91 (299)
T ss_pred CcEehhhhhhhh----cccCCccccccc
Confidence 899999996644 357999999885
No 136
>COG1872 Uncharacterized conserved protein [Function unknown]
Probab=21.40 E-value=89 Score=26.90 Aligned_cols=21 Identities=24% Similarity=0.423 Sum_probs=19.5
Q ss_pred HHHHHHHHhhccCCcccEEEE
Q 018247 280 RHLCQYVAHQTALQASEIEIY 300 (359)
Q Consensus 280 khLcqyvA~q~sl~~eEvEi~ 300 (359)
.||-+|+|.+++++..+|||.
T Consensus 53 ~~li~~Lak~~~v~kS~V~iv 73 (102)
T COG1872 53 EELIKFLAKTFGVPKSSVEIV 73 (102)
T ss_pred HHHHHHHHHHhCCCcccEEEE
Confidence 799999999999999999984
No 137
>cd01760 RBD Ubiquitin-like domain of RBD-like S/T kinases. The ras-binding domain (RBD) of the serine/threonine kinase raf is structurally quite similar to the beta-grasp fold of ubiquitin. A raf-like RBD is also present in RGS12 and other members of a family of GTPase activating proteins and TIAM1, a guanine nucleotide exchange protein.
Probab=20.80 E-value=1.5e+02 Score=23.57 Aligned_cols=43 Identities=21% Similarity=0.342 Sum_probs=37.8
Q ss_pred CCCCCCCceeccCCccHHHHHHHHHhhccCCcccEEEEEEecc
Q 018247 263 IPGLQQPYLCCRPTLSVRHLCQYVAHQTALQASEIEIYLVKEL 305 (359)
Q Consensus 263 iP~L~~PYL~CrPTlsVkhLcqyvA~q~sl~~eEvEi~v~k~~ 305 (359)
+|+=+.--+-.+|-+||+++-+=+-..-++..++..+|+.+..
T Consensus 6 LPng~~t~V~vrpg~ti~d~L~~~c~kr~l~~~~~~v~~~~~~ 48 (72)
T cd01760 6 LPNGQRTVVPVRPGMSVRDVLAKACKKRGLNPECCDVFLLGLD 48 (72)
T ss_pred CcCCCeEEEEECCCCCHHHHHHHHHHHcCCCHHHEEEEEecCC
Confidence 4666677788999999999999999999999999999999754
No 138
>PRK14559 putative protein serine/threonine phosphatase; Provisional
Probab=20.72 E-value=37 Score=37.35 Aligned_cols=24 Identities=33% Similarity=0.971 Sum_probs=14.8
Q ss_pred ccccHHHHHHHHhcCCCCccccccccc
Q 018247 5 HRFCRECIDKAMRLGNNECPACRTHCA 31 (359)
Q Consensus 5 HtFCR~CI~k~~~~~~~~CPvCR~~~~ 31 (359)
+.||..|=.. + ....||.|...+.
T Consensus 15 akFC~~CG~~-l--~~~~Cp~CG~~~~ 38 (645)
T PRK14559 15 NRFCQKCGTS-L--THKPCPQCGTEVP 38 (645)
T ss_pred CccccccCCC-C--CCCcCCCCCCCCC
Confidence 4599999322 2 1246888887653
No 139
>cd01804 midnolin_N Ubiquitin-like domain of midnolin. midnolin_N Midnolin (midbrain nucleolar protein) is expressed in the nucleolus and is thought to regulate genes involved in neurogenesis. Midnolin contains an amino-terminal ubiquitin-like domain.
Probab=20.50 E-value=1.2e+02 Score=23.84 Aligned_cols=32 Identities=13% Similarity=0.226 Sum_probs=28.2
Q ss_pred eeccCCccHHHHHHHHHhhccCCcccEEEEEE
Q 018247 271 LCCRPTLSVRHLCQYVAHQTALQASEIEIYLV 302 (359)
Q Consensus 271 L~CrPTlsVkhLcqyvA~q~sl~~eEvEi~v~ 302 (359)
+.-.|+-||.+|.+-||.+.+++++..-|+..
T Consensus 16 l~v~~~~TV~~LK~~I~~~~~~~~~~qrL~~~ 47 (78)
T cd01804 16 LSVPPDETVEGLKKRISQRLKVPKERLALLHR 47 (78)
T ss_pred EEECCcCHHHHHHHHHHHHhCCChHHEEEEEC
Confidence 66778999999999999999999999988744
Done!