Query 018247
Match_columns 359
No_of_seqs 190 out of 1038
Neff 4.3
Searched_HMMs 29240
Date Mon Mar 25 12:15:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018247.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018247hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ckl_B Ubiquitin ligase protei 99.3 1.1E-12 3.8E-17 113.9 4.0 86 1-86 71-158 (165)
2 3fl2_A E3 ubiquitin-protein li 99.2 8.6E-12 2.9E-16 103.5 6.0 54 1-54 68-121 (124)
3 2ckl_A Polycomb group ring fin 99.1 5E-11 1.7E-15 96.7 6.6 65 1-66 32-100 (108)
4 1z6u_A NP95-like ring finger p 99.1 9.8E-11 3.4E-15 101.6 5.9 54 1-54 94-147 (150)
5 3ztg_A E3 ubiquitin-protein li 99.0 1.4E-10 4.8E-15 91.0 4.7 49 1-49 29-79 (92)
6 1t1h_A Gspef-atpub14, armadill 99.0 1.2E-10 4.2E-15 88.7 3.3 48 1-49 24-71 (78)
7 2y43_A E3 ubiquitin-protein li 98.9 1E-09 3.5E-14 87.5 4.2 46 2-49 40-85 (99)
8 3l11_A E3 ubiquitin-protein li 98.9 3.1E-10 1.1E-14 92.8 1.0 53 1-53 31-89 (115)
9 3lrq_A E3 ubiquitin-protein li 98.9 9E-10 3.1E-14 88.7 3.6 48 1-49 39-86 (100)
10 2kr4_A Ubiquitin conjugation f 98.8 1.2E-09 4.2E-14 86.2 3.6 47 1-49 30-76 (85)
11 1jm7_A BRCA1, breast cancer ty 98.8 1.2E-09 3.9E-14 88.1 2.6 52 1-53 37-90 (112)
12 2kre_A Ubiquitin conjugation f 98.8 2E-09 7E-14 87.8 3.8 48 1-50 45-92 (100)
13 4ayc_A E3 ubiquitin-protein li 98.8 3.8E-09 1.3E-13 89.5 4.8 49 1-53 69-117 (138)
14 1wgm_A Ubiquitin conjugation f 98.7 6.6E-09 2.2E-13 84.5 4.4 47 1-49 38-85 (98)
15 2egp_A Tripartite motif-contai 98.7 4E-10 1.4E-14 85.5 -3.0 44 1-45 28-77 (79)
16 2ecw_A Tripartite motif-contai 98.7 1.2E-09 4.2E-14 83.2 -0.7 44 1-45 35-83 (85)
17 2ecv_A Tripartite motif-contai 98.7 1.6E-09 5.5E-14 82.5 -0.5 44 1-45 35-83 (85)
18 1jm7_B BARD1, BRCA1-associated 98.7 6.8E-09 2.3E-13 85.5 3.0 44 2-49 40-83 (117)
19 2csy_A Zinc finger protein 183 98.7 6.7E-09 2.3E-13 79.9 2.5 42 1-45 31-72 (81)
20 1rmd_A RAG1; V(D)J recombinati 98.6 2.1E-08 7E-13 82.0 4.3 49 1-49 39-87 (116)
21 1g25_A CDK-activating kinase a 98.6 1.7E-08 5.7E-13 74.6 2.9 37 1-38 24-60 (65)
22 2yu4_A E3 SUMO-protein ligase 98.6 1.9E-08 6.6E-13 80.5 2.7 50 2-52 25-82 (94)
23 2yur_A Retinoblastoma-binding 98.6 2.9E-08 9.8E-13 75.5 3.3 36 1-36 31-68 (74)
24 2ecy_A TNF receptor-associated 98.5 4.3E-08 1.5E-12 72.6 3.8 32 1-32 31-62 (66)
25 3hct_A TNF receptor-associated 98.5 2.1E-08 7.3E-13 82.6 2.4 48 1-49 34-81 (118)
26 3ng2_A RNF4, snurf, ring finge 98.5 4.7E-08 1.6E-12 72.6 3.4 36 1-38 33-68 (71)
27 2djb_A Polycomb group ring fin 98.5 4.7E-08 1.6E-12 73.7 3.2 31 1-32 32-62 (72)
28 1e4u_A Transcriptional repress 98.5 7E-08 2.4E-12 75.6 4.2 32 2-33 32-63 (78)
29 2ea6_A Ring finger protein 4; 98.5 4.9E-08 1.7E-12 71.8 2.7 30 1-31 38-67 (69)
30 2ysl_A Tripartite motif-contai 98.5 7.3E-08 2.5E-12 72.1 3.3 31 1-31 36-68 (73)
31 2ect_A Ring finger protein 126 98.5 5.2E-08 1.8E-12 74.1 2.4 31 1-32 34-64 (78)
32 2ct2_A Tripartite motif protei 98.4 4E-08 1.4E-12 75.7 1.2 32 1-32 35-68 (88)
33 3htk_C E3 SUMO-protein ligase 98.4 6E-08 2E-12 92.5 2.5 48 1-49 198-248 (267)
34 3knv_A TNF receptor-associated 98.4 5.4E-08 1.9E-12 83.6 0.9 48 1-48 47-102 (141)
35 2xeu_A Ring finger protein 4; 98.4 1.1E-07 3.6E-12 69.0 2.2 31 1-32 26-56 (64)
36 2ep4_A Ring finger protein 24; 98.4 1.3E-07 4.4E-12 71.2 2.5 32 1-33 34-65 (74)
37 1v87_A Deltex protein 2; ring- 98.4 2.6E-07 8.9E-12 74.9 4.2 33 1-33 59-95 (114)
38 2kiz_A E3 ubiquitin-protein li 98.3 1.7E-07 5.8E-12 69.6 2.7 30 1-31 33-62 (69)
39 2l0b_A E3 ubiquitin-protein li 98.3 1.7E-07 5.9E-12 74.1 2.6 30 1-31 59-88 (91)
40 2d8t_A Dactylidin, ring finger 98.3 1.3E-07 4.5E-12 71.0 1.2 30 1-31 31-60 (71)
41 3hcs_A TNF receptor-associated 98.3 2E-07 6.9E-12 80.8 2.4 48 1-49 34-81 (170)
42 2ecm_A Ring finger and CHY zin 98.3 2.3E-07 7.7E-12 65.8 2.1 30 1-31 25-54 (55)
43 1chc_A Equine herpes virus-1 r 98.3 1.6E-07 5.6E-12 69.4 1.4 31 1-32 22-52 (68)
44 2ecn_A Ring finger protein 141 98.3 1.1E-07 3.9E-12 70.8 0.2 32 1-33 30-61 (70)
45 1x4j_A Ring finger protein 38; 98.3 1.8E-07 6.1E-12 70.9 1.3 31 1-32 42-72 (75)
46 2ysj_A Tripartite motif-contai 98.3 3.5E-07 1.2E-11 66.9 2.6 26 1-26 36-63 (63)
47 2ecj_A Tripartite motif-contai 98.2 4.6E-07 1.6E-11 64.7 2.9 26 1-26 31-58 (58)
48 1iym_A EL5; ring-H2 finger, ub 98.2 2.9E-07 9.8E-12 65.4 1.7 27 3-30 27-53 (55)
49 4ap4_A E3 ubiquitin ligase RNF 98.2 5.8E-07 2E-11 73.3 2.9 31 1-32 30-60 (133)
50 2ecl_A Ring-box protein 2; RNF 98.0 2.8E-06 9.7E-11 65.9 2.6 29 2-31 47-75 (81)
51 1bor_A Transcription factor PM 97.9 2.1E-06 7.2E-11 62.3 0.5 27 1-31 22-48 (56)
52 3dpl_R Ring-box protein 1; ubi 97.8 6.5E-06 2.2E-10 67.9 2.6 30 1-31 71-100 (106)
53 4ic3_A E3 ubiquitin-protein li 97.8 4.2E-06 1.4E-10 63.9 0.7 26 1-31 40-66 (74)
54 2vje_A E3 ubiquitin-protein li 97.8 7.5E-06 2.6E-10 61.1 2.0 30 1-31 26-56 (64)
55 2vje_B MDM4 protein; proto-onc 97.8 7.6E-06 2.6E-10 61.0 2.0 30 1-31 25-55 (63)
56 2ecg_A Baculoviral IAP repeat- 97.7 1.9E-05 6.5E-10 60.2 2.7 27 1-32 41-68 (75)
57 1wim_A KIAA0161 protein; ring 97.5 2.6E-05 8.8E-10 61.6 1.9 28 2-29 25-61 (94)
58 2yho_A E3 ubiquitin-protein li 97.5 1.7E-05 5.9E-10 61.7 -0.0 39 1-44 34-75 (79)
59 3vk6_A E3 ubiquitin-protein li 97.4 6.3E-05 2.1E-09 62.5 2.6 31 1-31 18-48 (101)
60 2bay_A PRE-mRNA splicing facto 97.2 7.7E-05 2.6E-09 55.7 0.6 37 2-40 21-57 (61)
61 2ea5_A Cell growth regulator w 97.1 0.00014 4.8E-09 55.1 1.8 27 1-32 31-58 (68)
62 2d8s_A Cellular modulator of i 97.0 0.00034 1.2E-08 54.9 3.3 35 4-38 41-76 (80)
63 2ct0_A Non-SMC element 1 homol 93.9 0.028 9.6E-07 43.7 2.5 30 2-31 33-63 (74)
64 3h9d_A ATG8, microtubule-assoc 90.0 0.53 1.8E-05 39.7 5.9 81 251-355 32-114 (119)
65 3rui_B Autophagy-related prote 89.7 0.72 2.5E-05 38.8 6.5 81 251-355 31-113 (118)
66 3m95_A Autophagy related prote 87.1 1.1 3.8E-05 38.1 6.1 81 251-355 37-119 (125)
67 2r2q_A Gamma-aminobutyric acid 85.7 1.5 5.2E-05 36.1 6.0 81 251-354 28-109 (110)
68 3gs2_A E3 ubiquitin-protein li 84.8 0.23 7.8E-06 41.7 0.6 85 266-355 21-109 (111)
69 1eo6_A GATE-16, golgi-associat 84.1 1.9 6.4E-05 36.0 6.0 82 251-355 29-111 (117)
70 1wz3_A Autophagy 12B, ATG12B, 83.9 2.3 7.9E-05 34.5 6.2 77 251-355 14-91 (96)
71 4gdk_A Ubiquitin-like protein 83.6 1.7 5.8E-05 34.9 5.3 71 261-355 14-86 (91)
72 2zjd_A Microtubule-associated 82.8 1.9 6.6E-05 36.8 5.6 82 251-355 36-120 (130)
73 2jun_A Midline-1; B-BOX, TRIM, 82.8 0.38 1.3E-05 37.7 1.2 16 1-16 22-37 (101)
74 1vyx_A ORF K3, K3RING; zinc-bi 82.8 0.93 3.2E-05 33.3 3.2 26 6-31 32-58 (60)
75 3n3k_B Ubiquitin; hydrolase, p 74.6 3.6 0.00012 30.5 4.3 44 252-301 5-48 (85)
76 3phx_B Ubiquitin-like protein 73.8 5.9 0.0002 29.1 5.3 48 246-301 2-49 (79)
77 3mtn_B UBA80, ubcep1, ubiquiti 73.5 4.3 0.00015 29.9 4.5 45 251-301 4-48 (85)
78 3a9j_A Ubiquitin; protein comp 73.3 5.9 0.0002 28.3 5.1 32 270-301 14-45 (76)
79 1weo_A Cellulose synthase, cat 72.4 2.8 9.6E-05 34.2 3.3 30 2-31 40-69 (93)
80 3v6c_B Ubiquitin; structural g 71.0 5.6 0.00019 30.4 4.7 49 245-301 14-62 (91)
81 2ko5_A Ring finger protein Z; 69.4 1.5 5.2E-05 36.1 1.2 28 4-32 46-73 (99)
82 1ndd_A NEDD8, protein (ubiquit 67.1 9.4 0.00032 27.2 5.0 32 270-301 14-45 (76)
83 2bwf_A Ubiquitin-like protein 66.8 8.8 0.0003 27.7 4.8 44 251-301 5-48 (77)
84 3k9o_B Ubiquitin, UBB+1; E2-25 64.2 9.2 0.00031 29.1 4.7 44 252-301 3-46 (96)
85 3w1s_C Ubiquitin-like protein 63.9 7 0.00024 31.4 4.1 69 261-355 17-86 (91)
86 2dzi_A Ubiquitin-like protein 63.8 12 0.00041 27.2 5.2 46 248-301 7-52 (81)
87 1wh3_A 59 kDa 2'-5'-oligoadeny 62.7 13 0.00043 27.7 5.2 45 251-301 8-52 (87)
88 2o35_A Hypothetical protein DU 61.3 3 0.0001 34.6 1.5 13 6-18 42-54 (105)
89 3fyb_A Protein of unknown func 60.8 3.1 0.00011 34.5 1.5 12 6-17 41-52 (104)
90 3dbh_I NEDD8; cell cycle, acti 60.4 9.4 0.00032 28.4 4.1 45 251-301 13-57 (88)
91 2hj8_A Interferon-induced 17 k 60.4 15 0.0005 27.9 5.2 49 245-301 1-49 (88)
92 1sif_A Ubiquitin; hydrophobic 58.8 12 0.00039 28.6 4.4 45 251-301 10-54 (88)
93 3q3f_A Ribonuclease/ubiquitin 57.8 11 0.00037 33.8 4.6 46 250-301 105-150 (189)
94 1yx5_B Ubiquitin; proteasome, 57.0 18 0.0006 27.9 5.2 33 270-302 14-46 (98)
95 3vdz_A Ubiquitin-40S ribosomal 56.8 15 0.0005 29.5 4.9 45 251-301 36-80 (111)
96 4eew_A Large proline-rich prot 56.1 18 0.00063 27.0 5.1 48 246-301 15-62 (88)
97 4dwf_A HLA-B-associated transc 56.0 16 0.00053 27.5 4.7 47 247-301 4-50 (90)
98 4hcn_B Polyubiquitin, ubiquiti 55.9 13 0.00045 28.8 4.4 50 244-301 18-67 (98)
99 4fbj_B NEDD8; effector-HOST ta 54.7 17 0.00059 27.6 4.7 42 254-301 4-45 (88)
100 2uyz_B Small ubiquitin-related 54.0 16 0.00053 26.8 4.3 45 251-301 4-48 (79)
101 3m62_A Ubiquitin conjugation f 52.9 10 0.00035 42.0 4.3 48 1-50 907-955 (968)
102 1wyw_B Ubiquitin-like protein 50.1 21 0.00071 27.7 4.6 46 251-302 22-67 (97)
103 2ojr_A Ubiquitin; lanthide-bin 49.8 26 0.00089 27.8 5.3 45 251-301 36-80 (111)
104 1wx8_A Riken cDNA 4931431F19; 49.6 13 0.00045 28.5 3.3 47 246-301 15-61 (96)
105 1uh6_A Ubiquitin-like 5; beta- 49.3 20 0.00067 29.1 4.4 49 244-300 24-72 (100)
106 2wyq_A HHR23A, UV excision rep 48.6 33 0.0011 25.1 5.4 45 251-301 6-53 (85)
107 1wy8_A NP95-like ring finger p 45.3 39 0.0013 25.1 5.4 32 270-301 22-54 (89)
108 2faz_A Ubiquitin-like containi 43.7 44 0.0015 24.1 5.3 31 271-301 18-49 (78)
109 3l0w_B Monoubiquitinated proli 42.9 34 0.0011 29.6 5.2 42 256-303 6-47 (169)
110 1we7_A SF3A1 protein; structur 42.2 38 0.0013 27.0 5.1 31 271-301 50-80 (115)
111 1j8c_A Ubiquitin-like protein 41.6 33 0.0011 28.2 4.8 47 246-301 30-76 (125)
112 3b1l_X E3 ubiquitin-protein li 46.8 5.8 0.0002 28.8 0.0 32 270-301 14-45 (76)
113 3i2d_A E3 SUMO-protein ligase 40.6 9.2 0.00032 38.0 1.4 47 2-49 267-316 (371)
114 3m63_B Ubiquitin domain-contai 40.1 35 0.0012 26.8 4.5 45 250-301 28-72 (101)
115 1z60_A TFIIH basal transcripti 40.1 13 0.00045 27.7 1.8 24 2-26 35-58 (59)
116 3plu_A Ubiquitin-like modifier 39.8 24 0.00081 28.5 3.5 47 245-299 18-64 (93)
117 2daf_A FLJ35834 protein; hypot 38.7 22 0.00076 29.9 3.3 31 271-301 31-61 (118)
118 1v5o_A 1700011N24RIK protein; 38.6 62 0.0021 25.2 5.8 32 271-302 26-57 (102)
119 1ttn_A DC-UBP, dendritic cell- 38.1 34 0.0012 26.9 4.2 45 251-301 24-68 (106)
120 1we6_A Splicing factor, putati 36.3 40 0.0014 26.6 4.4 31 271-301 45-76 (111)
121 2klc_A Ubiquilin-1; ubiquitin- 35.8 35 0.0012 26.7 3.9 46 247-301 24-69 (101)
122 4a20_A Ubiquitin-like protein 35.5 32 0.0011 27.3 3.7 48 250-301 19-67 (98)
123 1uel_A HHR23B, UV excision rep 35.4 62 0.0021 24.7 5.2 32 270-301 14-48 (95)
124 1wx7_A Ubiquilin 3; ubiquitin- 34.1 36 0.0012 26.7 3.7 32 270-301 30-61 (106)
125 2kd0_A LRR repeats and ubiquit 33.9 37 0.0013 25.6 3.7 31 271-301 26-56 (85)
126 2kan_A Uncharacterized protein 33.7 44 0.0015 25.8 4.1 31 271-301 29-59 (94)
127 3m62_B UV excision repair prot 33.7 39 0.0013 26.7 3.9 33 270-302 15-47 (106)
128 2jmo_A Parkin; IBR, E3 ligase, 33.7 8.4 0.00029 29.6 -0.1 14 2-15 55-68 (80)
129 3u5e_m 60S ribosomal protein L 33.6 8.8 0.0003 31.5 0.0 32 271-302 15-46 (128)
130 2l7r_A Ubiquitin-like protein 31.3 44 0.0015 25.6 3.7 48 244-301 15-62 (93)
131 1js8_A Hemocyanin; glycoprotei 31.3 31 0.0011 33.8 3.5 43 231-275 345-389 (394)
132 1v86_A DNA segment, CHR 7, way 30.0 50 0.0017 25.5 3.9 30 271-300 31-60 (95)
133 3ai5_A Yeast enhanced green fl 30.0 60 0.0021 31.1 5.2 32 270-301 247-278 (307)
134 2gmg_A Hypothetical protein PF 29.8 11 0.00038 31.3 -0.0 24 2-31 72-95 (105)
135 2lbm_A Transcriptional regulat 29.8 39 0.0013 29.1 3.5 27 2-28 80-116 (142)
136 4fo9_A E3 SUMO-protein ligase 29.8 28 0.00096 34.4 2.9 47 2-49 233-282 (360)
137 1wjn_A Tubulin-folding protein 29.7 43 0.0015 25.8 3.4 33 272-304 28-60 (97)
138 1n91_A ORF, hypothetical prote 29.7 31 0.0011 28.5 2.7 21 280-300 53-73 (108)
139 1yqb_A Ubiquilin 3; structural 29.1 50 0.0017 25.8 3.8 49 244-301 18-66 (100)
140 2kk8_A Uncharacterized protein 28.2 60 0.0021 24.5 4.0 31 271-301 25-55 (84)
141 3b08_A Polyubiquitin-C, ubiqui 27.7 87 0.003 25.1 5.1 33 270-302 14-46 (152)
142 3u5c_f 40S ribosomal protein S 27.4 13 0.00044 32.0 0.0 32 271-302 15-46 (152)
143 2kdi_A Ubiquitin, vacuolar pro 26.7 63 0.0022 25.9 4.0 48 247-302 8-55 (114)
144 1l8d_A DNA double-strand break 26.7 57 0.0019 25.8 3.7 12 20-31 47-58 (112)
145 3u30_A Ubiquitin, linear DI-ub 26.3 74 0.0025 26.7 4.6 52 244-303 16-67 (172)
146 3rt3_B Ubiquitin-like protein 25.5 87 0.003 25.8 4.8 32 270-301 95-126 (159)
147 1wgd_A Homocysteine-responsive 25.4 65 0.0022 24.4 3.7 31 271-301 24-56 (93)
148 3rt3_B Ubiquitin-like protein 24.7 78 0.0027 26.0 4.4 42 253-300 5-46 (159)
149 4b6w_A Tubulin-specific chaper 23.5 1E+02 0.0035 23.6 4.5 34 271-304 19-52 (86)
150 1v6e_A Cytoskeleton-associated 22.9 1.2E+02 0.004 23.2 4.8 49 250-303 7-55 (95)
151 3u30_A Ubiquitin, linear DI-ub 21.4 68 0.0023 27.0 3.4 32 270-301 110-141 (172)
152 3b08_A Polyubiquitin-C, ubiqui 20.4 1.4E+02 0.0047 23.9 5.0 32 270-301 90-121 (152)
No 1
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=99.29 E-value=1.1e-12 Score=113.86 Aligned_cols=86 Identities=44% Similarity=0.834 Sum_probs=45.7
Q ss_pred CCCCccccHHHHHHHHhcCCCCcccccccccCCCCCCCChHHHHHHHHHCCChHHHHHH-HHhhhHHHHHH-HHHHhhhh
Q 018247 1 MECLHRFCRECIDKAMRLGNNECPACRTHCASRRSLRDDLNYDALIAALYPDIDKYEEE-ELAFQDEEAAR-NKQIQASI 78 (359)
Q Consensus 1 t~CGHtFCR~CI~k~~~~~~~~CPvCR~~~~~~~~LRpn~~L~~Liekl~P~l~~~e~~-e~af~e~~k~~-~~~iq~~i 78 (359)
++|||+||+.||.+|+..+...||+||..+.....+++|..|.+++..+++....++.+ +..|.+..+.. ...++.++
T Consensus 71 ~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~l~~~~~l~~~i~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~s~ 150 (165)
T 2ckl_B 71 KECLHRFCADCIITALRSGNKECPTCRKKLVSKRSLRPDPNFDALISKIYPSRDEYEAHQERVLARINKHNNQQALSHSI 150 (165)
T ss_dssp TTTCCEEEHHHHHHHHHTTCCBCTTTCCBCCSGGGEEECHHHHHHHHHHC------------------------------
T ss_pred CCCCChhHHHHHHHHHHhCcCCCCCCCCcCCCcccCCcCHHHHHHHHHHHcchhHHHHHHHHHHHHHHhhhhHHHHHHhH
Confidence 38999999999999998557789999999876678999999999999999998888763 34454433333 33445666
Q ss_pred hhhHHHHH
Q 018247 79 AQTFQRQT 86 (359)
Q Consensus 79 ~~~~~rq~ 86 (359)
...++.|+
T Consensus 151 ~~~~~~q~ 158 (165)
T 2ckl_B 151 EEGLKIQA 158 (165)
T ss_dssp --------
T ss_pred HHHHHHHH
Confidence 66555444
No 2
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=99.23 E-value=8.6e-12 Score=103.54 Aligned_cols=54 Identities=24% Similarity=0.676 Sum_probs=48.2
Q ss_pred CCCCccccHHHHHHHHhcCCCCcccccccccCCCCCCCChHHHHHHHHHCCChH
Q 018247 1 MECLHRFCRECIDKAMRLGNNECPACRTHCASRRSLRDDLNYDALIAALYPDID 54 (359)
Q Consensus 1 t~CGHtFCR~CI~k~~~~~~~~CPvCR~~~~~~~~LRpn~~L~~Liekl~P~l~ 54 (359)
++|||+||+.||..||......||+||..+.....+++|..|.+++++++|.+.
T Consensus 68 ~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~n~~l~~~i~~~~p~~~ 121 (124)
T 3fl2_A 68 TVCQHNVCKDCLDRSFRAQVFSCPACRYDLGRSYAMQVNQPLQTVLNQLFPGYG 121 (124)
T ss_dssp CTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTTCCCCCCHHHHHHHHHHSTTTT
T ss_pred eeCCCcccHHHHHHHHhHCcCCCCCCCccCCCCCCCCCCHHHHHHHHHHccccc
Confidence 589999999999999985556899999999765789999999999999999853
No 3
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=99.14 E-value=5e-11 Score=96.69 Aligned_cols=65 Identities=28% Similarity=0.624 Sum_probs=53.2
Q ss_pred CCCCccccHHHHHHHHhcCCCCcccccccccCC---CCCCCChHHHHHHHHHCCChHHHHH-HHHhhhHH
Q 018247 1 MECLHRFCRECIDKAMRLGNNECPACRTHCASR---RSLRDDLNYDALIAALYPDIDKYEE-EELAFQDE 66 (359)
Q Consensus 1 t~CGHtFCR~CI~k~~~~~~~~CPvCR~~~~~~---~~LRpn~~L~~Liekl~P~l~~~e~-~e~af~e~ 66 (359)
++|||+||+.||..|+.. ...||+|+..+... ..+++|..+.++++.+++.+...|. ++..|++.
T Consensus 32 ~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~~l~~n~~l~~~i~~~~~~~~~~e~~~~~~~~~~ 100 (108)
T 2ckl_A 32 IECLHSFCKTCIVRYLET-SKYCPICDVQVHKTRPLLNIRSDKTLQDIVYKLVPGLFKNEMKRRRDFYAA 100 (108)
T ss_dssp TTTCCEEEHHHHHHHHTS-CSBCTTTCCBSCSSCGGGGEEECHHHHHHHHHHSTTHHHHHHHHHHHHHHH
T ss_pred CCCCChhhHHHHHHHHHh-CCcCcCCCccccccCcccccCcCHHHHHHHHHHhhhHHHHHHHhHHHHHHh
Confidence 389999999999999974 57899999998643 2678999999999999999877765 44456553
No 4
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=99.08 E-value=9.8e-11 Score=101.59 Aligned_cols=54 Identities=22% Similarity=0.662 Sum_probs=47.8
Q ss_pred CCCCccccHHHHHHHHhcCCCCcccccccccCCCCCCCChHHHHHHHHHCCChH
Q 018247 1 MECLHRFCRECIDKAMRLGNNECPACRTHCASRRSLRDDLNYDALIAALYPDID 54 (359)
Q Consensus 1 t~CGHtFCR~CI~k~~~~~~~~CPvCR~~~~~~~~LRpn~~L~~Liekl~P~l~ 54 (359)
++|||+||+.||..|+......||+||..+.....+.+|..|+++++.++|.+.
T Consensus 94 ~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~l~~n~~l~~lv~~~~p~~~ 147 (150)
T 1z6u_A 94 TECFHNVCKDCLQRSFKAQVFSCPACRHDLGQNYIMIPNEILQTLLDLFFPGYS 147 (150)
T ss_dssp CTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTTCCCCBCHHHHHHHHHHSTTTT
T ss_pred cCCCCchhHHHHHHHHHhCCCcCCCCCccCCCCCCCCCCHHHHHHHHHHhhHhh
Confidence 689999999999999985556899999999765579999999999999999853
No 5
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=99.04 E-value=1.4e-10 Score=90.99 Aligned_cols=49 Identities=22% Similarity=0.550 Sum_probs=42.1
Q ss_pred CC-CCccccHHHHHHHHhc-CCCCcccccccccCCCCCCCChHHHHHHHHH
Q 018247 1 ME-CLHRFCRECIDKAMRL-GNNECPACRTHCASRRSLRDDLNYDALIAAL 49 (359)
Q Consensus 1 t~-CGHtFCR~CI~k~~~~-~~~~CPvCR~~~~~~~~LRpn~~L~~Liekl 49 (359)
++ |||+||+.||..||.. +...||+||..+.....+.+|..|.++++.+
T Consensus 29 ~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~~~~~n~~l~~~i~~~ 79 (92)
T 3ztg_A 29 IPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPDALIANKFLRQAVNNF 79 (92)
T ss_dssp CTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSCCTTSCEECHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCCCccccCcCHHHHHHHHHH
Confidence 46 9999999999999964 3468999999986567899999999998876
No 6
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.01 E-value=1.2e-10 Score=88.75 Aligned_cols=48 Identities=21% Similarity=0.349 Sum_probs=41.7
Q ss_pred CCCCccccHHHHHHHHhcCCCCcccccccccCCCCCCCChHHHHHHHHH
Q 018247 1 MECLHRFCRECIDKAMRLGNNECPACRTHCASRRSLRDDLNYDALIAAL 49 (359)
Q Consensus 1 t~CGHtFCR~CI~k~~~~~~~~CPvCR~~~~~~~~LRpn~~L~~Liekl 49 (359)
++|||+||+.||.+|+..+...||+|+..+. ...+.+|..|.++|+.+
T Consensus 24 ~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~-~~~l~~n~~l~~~i~~~ 71 (78)
T 1t1h_A 24 VSTGQTYERSSIQKWLDAGHKTCPKSQETLL-HAGLTPNYVLKSLIALW 71 (78)
T ss_dssp ETTTEEEEHHHHHHHHTTTCCBCTTTCCBCS-SCCCEECTTTHHHHHHH
T ss_pred cCCCCeecHHHHHHHHHHCcCCCCCCcCCCC-hhhCccCHHHHHHHHHH
Confidence 4799999999999999855778999999985 45789999999998766
No 7
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=98.88 E-value=1e-09 Score=87.48 Aligned_cols=46 Identities=28% Similarity=0.728 Sum_probs=40.5
Q ss_pred CCCccccHHHHHHHHhcCCCCcccccccccCCCCCCCChHHHHHHHHH
Q 018247 2 ECLHRFCRECIDKAMRLGNNECPACRTHCASRRSLRDDLNYDALIAAL 49 (359)
Q Consensus 2 ~CGHtFCR~CI~k~~~~~~~~CPvCR~~~~~~~~LRpn~~L~~Liekl 49 (359)
+|||+||+.||..|+. ....||+||..+.. ..+.+|..|.++++.+
T Consensus 40 ~CgH~fC~~Ci~~~~~-~~~~CP~Cr~~~~~-~~l~~n~~l~~~i~~~ 85 (99)
T 2y43_A 40 QCSHNYCSLCIRKFLS-YKTQCPTCCVTVTE-PDLKNNRILDELVKSL 85 (99)
T ss_dssp TTCCEEEHHHHHHHHT-TCCBCTTTCCBCCG-GGCEECHHHHHHHHHH
T ss_pred CCCCHhhHHHHHHHHH-CCCCCCCCCCcCCh-hhCCcCHHHHHHHHHH
Confidence 8999999999999998 45789999999853 5799999999998876
No 8
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=98.87 E-value=3.1e-10 Score=92.76 Aligned_cols=53 Identities=26% Similarity=0.620 Sum_probs=45.6
Q ss_pred CCCCccccHHHHHHHHhcCCCCcccccccccC------CCCCCCChHHHHHHHHHCCCh
Q 018247 1 MECLHRFCRECIDKAMRLGNNECPACRTHCAS------RRSLRDDLNYDALIAALYPDI 53 (359)
Q Consensus 1 t~CGHtFCR~CI~k~~~~~~~~CPvCR~~~~~------~~~LRpn~~L~~Liekl~P~l 53 (359)
++|||+||+.||..|+..+...||+||..+.. ...+..|..|.+++.+++|..
T Consensus 31 ~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~n~~l~~~i~~~~p~~ 89 (115)
T 3l11_A 31 LPCNHTLCKPCFQSTVEKASLCCPFCRRRVSSWTRYHTRRNSLVNVELWTIIQKHYPRE 89 (115)
T ss_dssp CTTSCEECHHHHCCCCCTTTSBCTTTCCBCHHHHHHHHHTTCCBCHHHHHHHHHHSHHH
T ss_pred cCCCCHHhHHHHHHHHhHCcCCCCCCCcccCccccccccccchhhHHHHHHHHHHCCHH
Confidence 58999999999999997556789999998753 356789999999999999883
No 9
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=98.87 E-value=9e-10 Score=88.74 Aligned_cols=48 Identities=23% Similarity=0.444 Sum_probs=39.7
Q ss_pred CCCCccccHHHHHHHHhcCCCCcccccccccCCCCCCCChHHHHHHHHH
Q 018247 1 MECLHRFCRECIDKAMRLGNNECPACRTHCASRRSLRDDLNYDALIAAL 49 (359)
Q Consensus 1 t~CGHtFCR~CI~k~~~~~~~~CPvCR~~~~~~~~LRpn~~L~~Liekl 49 (359)
++|||+||+.||.+|+......||+||..+. ...+..+..+.++++.+
T Consensus 39 ~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~-~~~l~~~~~~~~i~~~~ 86 (100)
T 3lrq_A 39 PHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQ-LRELVNCRWAEEVTQQL 86 (100)
T ss_dssp TTTCCEEEHHHHHHHHHHTCSBCTTTCCBCC-GGGCEECTTHHHHHHHH
T ss_pred CCCCChhhHHHHHHHHHHCcCCCCCCCCcCC-HHHhHhhHHHHHHHHHH
Confidence 5899999999999999854478999999985 45688888888777654
No 10
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=98.85 E-value=1.2e-09 Score=86.20 Aligned_cols=47 Identities=15% Similarity=0.046 Sum_probs=41.5
Q ss_pred CCCCccccHHHHHHHHhcCCCCcccccccccCCCCCCCChHHHHHHHHH
Q 018247 1 MECLHRFCRECIDKAMRLGNNECPACRTHCASRRSLRDDLNYDALIAAL 49 (359)
Q Consensus 1 t~CGHtFCR~CI~k~~~~~~~~CPvCR~~~~~~~~LRpn~~L~~Liekl 49 (359)
++|||+||+.||.+||. +...||+|+..+. ...|.+|..|.++|+.+
T Consensus 30 ~~cGhtf~r~~I~~~l~-~~~~cP~~~~~l~-~~~l~pn~~L~~~i~~~ 76 (85)
T 2kr4_A 30 LPSGTVMDRSIILRHLL-NSPTDPFNRQMLT-ESMLEPVPELKEQIQAW 76 (85)
T ss_dssp CTTSCEEEHHHHHHHHH-HCSBCTTTCCBCC-GGGCEECHHHHHHHHHH
T ss_pred CCCCCEECHHHHHHHHh-cCCCCCCCcCCCC-hHhcchHHHHHHHHHHH
Confidence 58999999999999998 4678999999985 45799999999998876
No 11
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.82 E-value=1.2e-09 Score=88.12 Aligned_cols=52 Identities=29% Similarity=0.699 Sum_probs=41.6
Q ss_pred CCCCccccHHHHHHHHhcC--CCCcccccccccCCCCCCCChHHHHHHHHHCCCh
Q 018247 1 MECLHRFCRECIDKAMRLG--NNECPACRTHCASRRSLRDDLNYDALIAALYPDI 53 (359)
Q Consensus 1 t~CGHtFCR~CI~k~~~~~--~~~CPvCR~~~~~~~~LRpn~~L~~Liekl~P~l 53 (359)
++|||+||+.||..|+... ...||+||..+. ...+.++..+.++++.+...+
T Consensus 37 ~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~-~~~~~~~~~l~~~~~~~~~~~ 90 (112)
T 1jm7_A 37 TKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDIT-KRSLQESTRFSQLVEELLKII 90 (112)
T ss_dssp CTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCC-TTTCBCCCSSSHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCC-HhhcCccHHHHHHHHHHHHHH
Confidence 5899999999999999742 357999999985 457888888888887765443
No 12
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=98.81 E-value=2e-09 Score=87.78 Aligned_cols=48 Identities=15% Similarity=0.047 Sum_probs=42.2
Q ss_pred CCCCccccHHHHHHHHhcCCCCcccccccccCCCCCCCChHHHHHHHHHC
Q 018247 1 MECLHRFCRECIDKAMRLGNNECPACRTHCASRRSLRDDLNYDALIAALY 50 (359)
Q Consensus 1 t~CGHtFCR~CI~k~~~~~~~~CPvCR~~~~~~~~LRpn~~L~~Liekl~ 50 (359)
++|||+||+.||.+||. ....||+|+..+. ...|.+|..|.++|+.+.
T Consensus 45 ~~cGhtf~r~~I~~~l~-~~~~cP~~~~~l~-~~~L~pn~~Lk~~I~~~~ 92 (100)
T 2kre_A 45 LPSGTIMDRSIILRHLL-NSPTDPFNRQTLT-ESMLEPVPELKEQIQAWM 92 (100)
T ss_dssp ETTTEEEEHHHHHHHTT-SCSBCSSSCCBCC-TTSSEECHHHHHHHHHHH
T ss_pred CCCCCEEchHHHHHHHH-cCCCCCCCCCCCC-hhhceECHHHHHHHHHHH
Confidence 47999999999999998 5678999999985 467999999999998764
No 13
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=98.78 E-value=3.8e-09 Score=89.45 Aligned_cols=49 Identities=33% Similarity=0.735 Sum_probs=37.6
Q ss_pred CCCCccccHHHHHHHHhcCCCCcccccccccCCCCCCCChHHHHHHHHHCCCh
Q 018247 1 MECLHRFCRECIDKAMRLGNNECPACRTHCASRRSLRDDLNYDALIAALYPDI 53 (359)
Q Consensus 1 t~CGHtFCR~CI~k~~~~~~~~CPvCR~~~~~~~~LRpn~~L~~Liekl~P~l 53 (359)
++|||+||..||..|+. ....||+||..+... ..+..++.++..++..+
T Consensus 69 ~~CgH~fc~~Ci~~~~~-~~~~CP~Cr~~~~~~---~~~~~~~~~i~~~~~~l 117 (138)
T 4ayc_A 69 LNCAHSFCSYCINEWMK-RKIECPICRKDIKSK---TYSLVLDNCINKMVNNL 117 (138)
T ss_dssp ETTSCEEEHHHHHHHTT-TCSBCTTTCCBCCCE---EECHHHHHHHHHHHTTS
T ss_pred CCCCCCccHHHHHHHHH-cCCcCCCCCCcCCCC---CCccchhHHHHHHHHHh
Confidence 58999999999999997 467899999988532 24566677777665554
No 14
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=98.73 E-value=6.6e-09 Score=84.49 Aligned_cols=47 Identities=13% Similarity=0.133 Sum_probs=41.2
Q ss_pred CCCC-ccccHHHHHHHHhcCCCCcccccccccCCCCCCCChHHHHHHHHH
Q 018247 1 MECL-HRFCRECIDKAMRLGNNECPACRTHCASRRSLRDDLNYDALIAAL 49 (359)
Q Consensus 1 t~CG-HtFCR~CI~k~~~~~~~~CPvCR~~~~~~~~LRpn~~L~~Liekl 49 (359)
++|| |+||+.||.+||.. ...||+|+..+. ...|.+|..|.++|+.+
T Consensus 38 ~~cG~htf~r~cI~~~l~~-~~~cP~~~~~l~-~~~L~pn~~Lk~~I~~~ 85 (98)
T 1wgm_A 38 LPSSRVTVDRSTIARHLLS-DQTDPFNRSPLT-MDQIRPNTELKEKIQRW 85 (98)
T ss_dssp CTTTCCEEEHHHHHHHTTT-SCBCTTTCSBCC-TTTSEECHHHHHHHHHH
T ss_pred CCCCCeEECHHHHHHHHHh-CCCCCCCCCCCC-hhhceEcHHHHHHHHHH
Confidence 5899 99999999999984 678999999985 45799999999998866
No 15
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=98.72 E-value=4e-10 Score=85.55 Aligned_cols=44 Identities=23% Similarity=0.662 Sum_probs=35.1
Q ss_pred CCCCccccHHHHHHHHhcC------CCCcccccccccCCCCCCCChHHHHH
Q 018247 1 MECLHRFCRECIDKAMRLG------NNECPACRTHCASRRSLRDDLNYDAL 45 (359)
Q Consensus 1 t~CGHtFCR~CI~k~~~~~------~~~CPvCR~~~~~~~~LRpn~~L~~L 45 (359)
++|||+||+.||.+|+... ...||+||..+. ...+++|..|.++
T Consensus 28 l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~-~~~l~~n~~l~~l 77 (79)
T 2egp_A 28 LDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYS-FEHLQANQHLANI 77 (79)
T ss_dssp CSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCC-SSGGGTCSSSCCC
T ss_pred CCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCC-HhhCCcCHHHHHh
Confidence 5899999999999998742 568999999985 3567787766554
No 16
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.70 E-value=1.2e-09 Score=83.16 Aligned_cols=44 Identities=30% Similarity=0.746 Sum_probs=35.3
Q ss_pred CCCCccccHHHHHHHHhcC-----CCCcccccccccCCCCCCCChHHHHH
Q 018247 1 MECLHRFCRECIDKAMRLG-----NNECPACRTHCASRRSLRDDLNYDAL 45 (359)
Q Consensus 1 t~CGHtFCR~CI~k~~~~~-----~~~CPvCR~~~~~~~~LRpn~~L~~L 45 (359)
++|||+||+.||..|+... ...||+||..+. ...+++|..|+++
T Consensus 35 ~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~-~~~~~~n~~l~~~ 83 (85)
T 2ecw_A 35 ADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYP-FGNLKPNLHVANI 83 (85)
T ss_dssp CTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCC-TTCCEECSCCCSS
T ss_pred CCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCC-HHhCCcCHHHHHh
Confidence 5899999999999998752 568999999985 4567777766554
No 17
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.69 E-value=1.6e-09 Score=82.49 Aligned_cols=44 Identities=25% Similarity=0.782 Sum_probs=35.6
Q ss_pred CCCCccccHHHHHHHHhc-----CCCCcccccccccCCCCCCCChHHHHH
Q 018247 1 MECLHRFCRECIDKAMRL-----GNNECPACRTHCASRRSLRDDLNYDAL 45 (359)
Q Consensus 1 t~CGHtFCR~CI~k~~~~-----~~~~CPvCR~~~~~~~~LRpn~~L~~L 45 (359)
++|||+||+.||..|+.. ....||+||..+. ...+++|..|+++
T Consensus 35 ~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~-~~~~~~n~~l~~~ 83 (85)
T 2ecv_A 35 LDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQ-PENIRPNRHVANI 83 (85)
T ss_dssp CSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSC-SSSCCCSCCCCCC
T ss_pred CCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccC-HHhcCccHHHHHh
Confidence 589999999999999864 2578999999985 4568888776554
No 18
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.68 E-value=6.8e-09 Score=85.48 Aligned_cols=44 Identities=27% Similarity=0.668 Sum_probs=39.1
Q ss_pred CCCccccHHHHHHHHhcCCCCcccccccccCCCCCCCChHHHHHHHHH
Q 018247 2 ECLHRFCRECIDKAMRLGNNECPACRTHCASRRSLRDDLNYDALIAAL 49 (359)
Q Consensus 2 ~CGHtFCR~CI~k~~~~~~~~CPvCR~~~~~~~~LRpn~~L~~Liekl 49 (359)
+|||+||+.||..|+. ..||+||..+. ...+++|..|.+++..+
T Consensus 40 ~CgH~fC~~Ci~~~~~---~~CP~Cr~~~~-~~~~~~n~~l~~l~~~~ 83 (117)
T 1jm7_B 40 GCEHIFCSNCVSDCIG---TGCPVCYTPAW-IQDLKINRQLDSMIQLC 83 (117)
T ss_dssp SSSCCBCTTTGGGGTT---TBCSSSCCBCS-CSSCCCCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhc---CCCcCCCCcCc-cccccccHHHHHHHHHH
Confidence 8999999999999986 67999999984 56799999999998865
No 19
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.67 E-value=6.7e-09 Score=79.88 Aligned_cols=42 Identities=21% Similarity=0.472 Sum_probs=33.4
Q ss_pred CCCCccccHHHHHHHHhcCCCCcccccccccCCCCCCCChHHHHH
Q 018247 1 MECLHRFCRECIDKAMRLGNNECPACRTHCASRRSLRDDLNYDAL 45 (359)
Q Consensus 1 t~CGHtFCR~CI~k~~~~~~~~CPvCR~~~~~~~~LRpn~~L~~L 45 (359)
++|||+||+.||.+|+. ....||+||..+. ..+.++..+.+.
T Consensus 31 ~~CgH~fC~~Ci~~~~~-~~~~CP~Cr~~~~--~~~~~~~~l~~~ 72 (81)
T 2csy_A 31 TKCRHYFCESCALEHFR-ATPRCYICDQPTG--GIFNPAKELMAK 72 (81)
T ss_dssp CTTSCEEEHHHHHHHHH-HCSBCSSSCCBCC--SCCEECHHHHHH
T ss_pred ccCCCHhHHHHHHHHHH-CCCcCCCcCcccc--ccCCcHHHHHHH
Confidence 58999999999999997 3678999999984 456777544433
No 20
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=98.62 E-value=2.1e-08 Score=82.03 Aligned_cols=49 Identities=27% Similarity=0.641 Sum_probs=38.2
Q ss_pred CCCCccccHHHHHHHHhcCCCCcccccccccCCCCCCCChHHHHHHHHH
Q 018247 1 MECLHRFCRECIDKAMRLGNNECPACRTHCASRRSLRDDLNYDALIAAL 49 (359)
Q Consensus 1 t~CGHtFCR~CI~k~~~~~~~~CPvCR~~~~~~~~LRpn~~L~~Liekl 49 (359)
++|||+||+.||.+|+......||+||..+....-..++..+.+++..+
T Consensus 39 ~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~l~~~i~~l 87 (116)
T 1rmd_A 39 TSCKHLFCRICILRCLKVMGSYCPSCRYPCFPTDLESPVKSFLNILNSL 87 (116)
T ss_dssp CTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCBCCCHHHHHHHHHC
T ss_pred cCCCCcccHHHHHHHHhHCcCcCCCCCCCCCHhhccccHHHHHHHHHHh
Confidence 5899999999999999855678999999986543334666777776654
No 21
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.60 E-value=1.7e-08 Score=74.63 Aligned_cols=37 Identities=30% Similarity=0.721 Sum_probs=29.7
Q ss_pred CCCCccccHHHHHHHHhcCCCCcccccccccCCCCCCC
Q 018247 1 MECLHRFCRECIDKAMRLGNNECPACRTHCASRRSLRD 38 (359)
Q Consensus 1 t~CGHtFCR~CI~k~~~~~~~~CPvCR~~~~~~~~LRp 38 (359)
++|||+||..||.+|+......||+||..+. ...+++
T Consensus 24 ~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~-~~~~~~ 60 (65)
T 1g25_A 24 NVCGHTLCESCVDLLFVRGAGNCPECGTPLR-KSNFRV 60 (65)
T ss_dssp CTTCCCEEHHHHHHHHHTTSSSCTTTCCCCS-SCCCEE
T ss_pred CCCCCHhHHHHHHHHHHcCCCcCCCCCCccc-ccccee
Confidence 4899999999999998755678999999985 334443
No 22
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.57 E-value=1.9e-08 Score=80.46 Aligned_cols=50 Identities=18% Similarity=0.341 Sum_probs=41.0
Q ss_pred CCCccccHHHHHHHHhcC-----CCCccc--cccc-ccCCCCCCCChHHHHHHHHHCCC
Q 018247 2 ECLHRFCRECIDKAMRLG-----NNECPA--CRTH-CASRRSLRDDLNYDALIAALYPD 52 (359)
Q Consensus 2 ~CGHtFCR~CI~k~~~~~-----~~~CPv--CR~~-~~~~~~LRpn~~L~~Liekl~P~ 52 (359)
.|||+||+.||..||... ...||+ |+.. + ....|.+|..|.++|+.+...
T Consensus 25 ~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l-~~~~L~pn~~L~~~I~~~~~~ 82 (94)
T 2yu4_A 25 VCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDI-RKSDLIQDEALRRAIENHNKK 82 (94)
T ss_dssp SSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCB-CGGGEEECHHHHHHHHHHHTT
T ss_pred CCCCeecHHHHHHHHHHccCcCCCCCCCcCcCccccc-CHhhCcCCHHHHHHHHHHHHH
Confidence 499999999999999742 358999 9977 5 456799999999999877433
No 23
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=98.56 E-value=2.9e-08 Score=75.54 Aligned_cols=36 Identities=31% Similarity=0.774 Sum_probs=28.2
Q ss_pred CC-CCccccHHHHHHHHhc-CCCCcccccccccCCCCC
Q 018247 1 ME-CLHRFCRECIDKAMRL-GNNECPACRTHCASRRSL 36 (359)
Q Consensus 1 t~-CGHtFCR~CI~k~~~~-~~~~CPvCR~~~~~~~~L 36 (359)
++ |||+||+.||..|+.. +...||+||..+.....+
T Consensus 31 ~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~~~ 68 (74)
T 2yur_A 31 IPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPDAL 68 (74)
T ss_dssp CSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCCTTTT
T ss_pred cCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCCcccc
Confidence 46 9999999999999974 346899999986433333
No 24
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.55 E-value=4.3e-08 Score=72.60 Aligned_cols=32 Identities=31% Similarity=0.832 Sum_probs=27.6
Q ss_pred CCCCccccHHHHHHHHhcCCCCcccccccccC
Q 018247 1 MECLHRFCRECIDKAMRLGNNECPACRTHCAS 32 (359)
Q Consensus 1 t~CGHtFCR~CI~k~~~~~~~~CPvCR~~~~~ 32 (359)
++|||+||+.||.+|+......||+||..+..
T Consensus 31 ~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 62 (66)
T 2ecy_A 31 TECGHRFCESCMAALLSSSSPKCTACQESIVK 62 (66)
T ss_dssp CSSSCCCCHHHHHHHHTTSSCCCTTTCCCCCT
T ss_pred CCCCCHHHHHHHHHHHHhCcCCCCCCCcCCCh
Confidence 58999999999999996456789999998753
No 25
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=98.54 E-value=2.1e-08 Score=82.59 Aligned_cols=48 Identities=31% Similarity=0.514 Sum_probs=38.8
Q ss_pred CCCCccccHHHHHHHHhcCCCCcccccccccCCCCCCCChHHHHHHHHH
Q 018247 1 MECLHRFCRECIDKAMRLGNNECPACRTHCASRRSLRDDLNYDALIAAL 49 (359)
Q Consensus 1 t~CGHtFCR~CI~k~~~~~~~~CPvCR~~~~~~~~LRpn~~L~~Liekl 49 (359)
++|||+||+.||.+|+......||+||..+.. ..+.++..+..++..+
T Consensus 34 ~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~-~~~~~~~~l~~~i~~l 81 (118)
T 3hct_A 34 TPCGHRFCKACIIKSIRDAGHKCPVDNEILLE-NQLFPDNFAKREILSL 81 (118)
T ss_dssp CTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCG-GGCEECHHHHHHHHTS
T ss_pred CCcCChhhHHHHHHHHhhCCCCCCCCCCCcCH-HhcccCHHHHHHHccc
Confidence 58999999999999997545589999999854 4577888777776654
No 26
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=98.52 E-value=4.7e-08 Score=72.60 Aligned_cols=36 Identities=31% Similarity=0.861 Sum_probs=29.2
Q ss_pred CCCCccccHHHHHHHHhcCCCCcccccccccCCCCCCC
Q 018247 1 MECLHRFCRECIDKAMRLGNNECPACRTHCASRRSLRD 38 (359)
Q Consensus 1 t~CGHtFCR~CI~k~~~~~~~~CPvCR~~~~~~~~LRp 38 (359)
++|||+||..||.+|+.. ...||+||..+.. ..+++
T Consensus 33 ~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~-~~~~~ 68 (71)
T 3ng2_A 33 TECGHVFCSQCLRDSLKN-ANTCPTCRKKINH-KRYHP 68 (71)
T ss_dssp CTTSCEEEHHHHHHHHHH-CSBCTTTCCBCCC-CSCCC
T ss_pred CCCCChHhHHHHHHHHHc-CCCCCCCCCccCh-hheee
Confidence 479999999999999974 5789999999853 34444
No 27
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.51 E-value=4.7e-08 Score=73.70 Aligned_cols=31 Identities=39% Similarity=0.993 Sum_probs=27.1
Q ss_pred CCCCccccHHHHHHHHhcCCCCcccccccccC
Q 018247 1 MECLHRFCRECIDKAMRLGNNECPACRTHCAS 32 (359)
Q Consensus 1 t~CGHtFCR~CI~k~~~~~~~~CPvCR~~~~~ 32 (359)
++|||+||+.||.+|+.. ...||+||..+..
T Consensus 32 ~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~ 62 (72)
T 2djb_A 32 TECLHTFCKSCIVRHFYY-SNRCPKCNIVVHQ 62 (72)
T ss_dssp SSSCCEECHHHHHHHHHH-CSSCTTTCCCCCS
T ss_pred CCCCCHHHHHHHHHHHHc-CCcCCCcCcccCc
Confidence 389999999999999974 6789999999854
No 28
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=98.51 E-value=7e-08 Score=75.58 Aligned_cols=32 Identities=31% Similarity=0.653 Sum_probs=27.8
Q ss_pred CCCccccHHHHHHHHhcCCCCcccccccccCC
Q 018247 2 ECLHRFCRECIDKAMRLGNNECPACRTHCASR 33 (359)
Q Consensus 2 ~CGHtFCR~CI~k~~~~~~~~CPvCR~~~~~~ 33 (359)
+|||+||+.||.++|......||+||..+...
T Consensus 32 ~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~~ 63 (78)
T 1e4u_A 32 TCGYQICRFCWHRIRTDENGLCPACRKPYPED 63 (78)
T ss_dssp TTSCCCCHHHHHHHTTSSCSBCTTTCCBCSSC
T ss_pred CCCCCcCHHHHHHHHhcCCCCCCCCCCccCCC
Confidence 49999999999999976678899999998643
No 29
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.49 E-value=4.9e-08 Score=71.76 Aligned_cols=30 Identities=37% Similarity=1.008 Sum_probs=26.6
Q ss_pred CCCCccccHHHHHHHHhcCCCCccccccccc
Q 018247 1 MECLHRFCRECIDKAMRLGNNECPACRTHCA 31 (359)
Q Consensus 1 t~CGHtFCR~CI~k~~~~~~~~CPvCR~~~~ 31 (359)
++|||.||..||.+|+.. ...||+||..+.
T Consensus 38 ~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~ 67 (69)
T 2ea6_A 38 TECGHVFCSQCLRDSLKN-ANTCPTCRKKIN 67 (69)
T ss_dssp CSSSCEEEHHHHHHHHHH-CSSCTTTCCCCC
T ss_pred CCCCChhcHHHHHHHHHc-CCCCCCCCCccC
Confidence 479999999999999974 678999999874
No 30
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.47 E-value=7.3e-08 Score=72.06 Aligned_cols=31 Identities=35% Similarity=0.895 Sum_probs=26.7
Q ss_pred CCCCccccHHHHHHHHhc--CCCCccccccccc
Q 018247 1 MECLHRFCRECIDKAMRL--GNNECPACRTHCA 31 (359)
Q Consensus 1 t~CGHtFCR~CI~k~~~~--~~~~CPvCR~~~~ 31 (359)
++|||+||+.||..|+.. ....||+||..+.
T Consensus 36 ~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~ 68 (73)
T 2ysl_A 36 IDCGHNFCLKCITQIGETSCGFFKCPLCKTSVR 68 (73)
T ss_dssp CTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCC
T ss_pred cCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCC
Confidence 489999999999999863 3568999999885
No 31
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=98.46 E-value=5.2e-08 Score=74.08 Aligned_cols=31 Identities=29% Similarity=0.744 Sum_probs=27.2
Q ss_pred CCCCccccHHHHHHHHhcCCCCcccccccccC
Q 018247 1 MECLHRFCRECIDKAMRLGNNECPACRTHCAS 32 (359)
Q Consensus 1 t~CGHtFCR~CI~k~~~~~~~~CPvCR~~~~~ 32 (359)
++|||.||..||.+|+. ....||+||..+..
T Consensus 34 ~~C~H~fc~~Ci~~~~~-~~~~CP~Cr~~~~~ 64 (78)
T 2ect_A 34 LPCNHLFHDSCIVPWLE-QHDSCPVCRKSLTG 64 (78)
T ss_dssp CTTSCEEETTTTHHHHT-TTCSCTTTCCCCCC
T ss_pred eCCCCeecHHHHHHHHH-cCCcCcCcCCccCC
Confidence 48999999999999997 45789999999854
No 32
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.44 E-value=4e-08 Score=75.69 Aligned_cols=32 Identities=28% Similarity=0.794 Sum_probs=27.2
Q ss_pred CCCCccccHHHHHHHHhcC--CCCcccccccccC
Q 018247 1 MECLHRFCRECIDKAMRLG--NNECPACRTHCAS 32 (359)
Q Consensus 1 t~CGHtFCR~CI~k~~~~~--~~~CPvCR~~~~~ 32 (359)
++|||+||..||.+|+... ...||+||..+..
T Consensus 35 ~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 68 (88)
T 2ct2_A 35 LHCGHTICRQCLEKLLASSINGVRCPFCSKITRI 68 (88)
T ss_dssp CSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCC
T ss_pred CCCCChhhHHHHHHHHHcCCCCcCCCCCCCcccc
Confidence 5899999999999999753 4689999998743
No 33
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=98.43 E-value=6e-08 Score=92.49 Aligned_cols=48 Identities=21% Similarity=0.381 Sum_probs=40.8
Q ss_pred CCCCccccHHHHHHHHhc-CCCCccc--ccccccCCCCCCCChHHHHHHHHH
Q 018247 1 MECLHRFCRECIDKAMRL-GNNECPA--CRTHCASRRSLRDDLNYDALIAAL 49 (359)
Q Consensus 1 t~CGHtFCR~CI~k~~~~-~~~~CPv--CR~~~~~~~~LRpn~~L~~Liekl 49 (359)
+.|||+||+.||.+||.. +...||+ |+..+. ...|++|..|.++++.+
T Consensus 198 ~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~-~~dL~pN~~L~~lve~~ 248 (267)
T 3htk_C 198 RKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVS-MRDFVRDPIMELRCKIA 248 (267)
T ss_dssp SSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEEC-GGGEEECHHHHHHHHHH
T ss_pred CCCCCcccHHHHHHHHHhCCCCCCCcccccCcCc-hhhCCcCHHHHHHHHHH
Confidence 479999999999999975 3457999 999884 56799999999998764
No 34
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=98.39 E-value=5.4e-08 Score=83.62 Aligned_cols=48 Identities=23% Similarity=0.477 Sum_probs=35.3
Q ss_pred CCCCccccHHHHHHHHhcCCCCcccccccccCC--------CCCCCChHHHHHHHH
Q 018247 1 MECLHRFCRECIDKAMRLGNNECPACRTHCASR--------RSLRDDLNYDALIAA 48 (359)
Q Consensus 1 t~CGHtFCR~CI~k~~~~~~~~CPvCR~~~~~~--------~~LRpn~~L~~Liek 48 (359)
++|||+||+.||.+|+......||+||..+... ..+.+|..+...+..
T Consensus 47 ~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~l~~~~~~~d~~~~~~i~~ 102 (141)
T 3knv_A 47 AQCGHRYCSFCLASILSSGPQNCAACVHEGIYEEGISILESSSAFPDNAARREVES 102 (141)
T ss_dssp CTTSCEEEHHHHHHHGGGSCEECHHHHHTTCCCTTTTEECGGGCEECHHHHHHHHT
T ss_pred CCCCCccCHHHHHHHHhcCCCCCCCCCCcccccccccccchhhhcccHHHHHHHcc
Confidence 589999999999999985556899999975221 234466666665554
No 35
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=98.38 E-value=1.1e-07 Score=68.99 Aligned_cols=31 Identities=35% Similarity=0.973 Sum_probs=27.0
Q ss_pred CCCCccccHHHHHHHHhcCCCCcccccccccC
Q 018247 1 MECLHRFCRECIDKAMRLGNNECPACRTHCAS 32 (359)
Q Consensus 1 t~CGHtFCR~CI~k~~~~~~~~CPvCR~~~~~ 32 (359)
++|||.||..||.+|+.. ...||+||..+..
T Consensus 26 ~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~ 56 (64)
T 2xeu_A 26 TECGHVFCSQCLRDSLKN-ANTCPTCRKKINH 56 (64)
T ss_dssp ETTSCEEEHHHHHHHHHH-CSBCTTTCCBCTT
T ss_pred CCCCCchhHHHHHHHHHc-CCCCCCCCccCCc
Confidence 479999999999999974 6789999999853
No 36
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.37 E-value=1.3e-07 Score=71.18 Aligned_cols=32 Identities=28% Similarity=0.668 Sum_probs=27.3
Q ss_pred CCCCccccHHHHHHHHhcCCCCcccccccccCC
Q 018247 1 MECLHRFCRECIDKAMRLGNNECPACRTHCASR 33 (359)
Q Consensus 1 t~CGHtFCR~CI~k~~~~~~~~CPvCR~~~~~~ 33 (359)
++|||.||..||.+|+.. ...||+||..+...
T Consensus 34 ~~C~H~f~~~Ci~~~~~~-~~~CP~Cr~~~~~~ 65 (74)
T 2ep4_A 34 CPCKHAFHRKCLIKWLEV-RKVCPLCNMPVLQL 65 (74)
T ss_dssp ETTTEEEEHHHHHHHHHH-CSBCTTTCCBCSSC
T ss_pred cCCCCEecHHHHHHHHHc-CCcCCCcCcccccc
Confidence 389999999999999974 45899999988543
No 37
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=98.36 E-value=2.6e-07 Score=74.92 Aligned_cols=33 Identities=27% Similarity=0.644 Sum_probs=27.3
Q ss_pred CCCCccccHHHHHHHHhc----CCCCcccccccccCC
Q 018247 1 MECLHRFCRECIDKAMRL----GNNECPACRTHCASR 33 (359)
Q Consensus 1 t~CGHtFCR~CI~k~~~~----~~~~CPvCR~~~~~~ 33 (359)
++|||.||..||..|+.. ....||+||..+...
T Consensus 59 ~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~~ 95 (114)
T 1v87_A 59 TKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEK 95 (114)
T ss_dssp SSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSSC
T ss_pred CCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccCCC
Confidence 479999999999999952 356899999988543
No 38
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=98.35 E-value=1.7e-07 Score=69.61 Aligned_cols=30 Identities=33% Similarity=0.906 Sum_probs=26.4
Q ss_pred CCCCccccHHHHHHHHhcCCCCccccccccc
Q 018247 1 MECLHRFCRECIDKAMRLGNNECPACRTHCA 31 (359)
Q Consensus 1 t~CGHtFCR~CI~k~~~~~~~~CPvCR~~~~ 31 (359)
++|||.||..||.+|+.. ...||+||..+.
T Consensus 33 ~~C~H~fc~~Ci~~~~~~-~~~CP~Cr~~~~ 62 (69)
T 2kiz_A 33 LPCMHLFHQVCVDQWLIT-NKKCPICRVDIE 62 (69)
T ss_dssp CTTSCEEEHHHHHHHHHH-CSBCTTTCSBSC
T ss_pred eCCCCHHHHHHHHHHHHc-CCCCcCcCcccc
Confidence 589999999999999974 567999999875
No 39
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=98.33 E-value=1.7e-07 Score=74.10 Aligned_cols=30 Identities=27% Similarity=0.787 Sum_probs=26.6
Q ss_pred CCCCccccHHHHHHHHhcCCCCccccccccc
Q 018247 1 MECLHRFCRECIDKAMRLGNNECPACRTHCA 31 (359)
Q Consensus 1 t~CGHtFCR~CI~k~~~~~~~~CPvCR~~~~ 31 (359)
++|||.||..||..|+. ....||+||..+.
T Consensus 59 l~C~H~Fh~~Ci~~wl~-~~~~CP~Cr~~~~ 88 (91)
T 2l0b_A 59 LPCHHYFHKPCVSIWLQ-KSGTCPVCRCMFP 88 (91)
T ss_dssp ETTTEEEEHHHHHHHHT-TTCBCTTTCCBSS
T ss_pred cCCCChHHHHHHHHHHH-cCCcCcCcCccCC
Confidence 47999999999999997 4678999999874
No 40
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.30 E-value=1.3e-07 Score=71.01 Aligned_cols=30 Identities=30% Similarity=0.740 Sum_probs=26.2
Q ss_pred CCCCccccHHHHHHHHhcCCCCccccccccc
Q 018247 1 MECLHRFCRECIDKAMRLGNNECPACRTHCA 31 (359)
Q Consensus 1 t~CGHtFCR~CI~k~~~~~~~~CPvCR~~~~ 31 (359)
++|||.||..||.+|+. ....||+||..+.
T Consensus 31 ~~CgH~fC~~Ci~~~~~-~~~~CP~Cr~~~~ 60 (71)
T 2d8t_A 31 LPCKHVFCYLCVKGASW-LGKRCALCRQEIP 60 (71)
T ss_dssp ETTTEEEEHHHHHHCTT-CSSBCSSSCCBCC
T ss_pred ccCCCHHHHHHHHHHHH-CCCcCcCcCchhC
Confidence 47999999999999987 3578999999874
No 41
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=98.29 E-value=2e-07 Score=80.85 Aligned_cols=48 Identities=31% Similarity=0.514 Sum_probs=38.7
Q ss_pred CCCCccccHHHHHHHHhcCCCCcccccccccCCCCCCCChHHHHHHHHH
Q 018247 1 MECLHRFCRECIDKAMRLGNNECPACRTHCASRRSLRDDLNYDALIAAL 49 (359)
Q Consensus 1 t~CGHtFCR~CI~k~~~~~~~~CPvCR~~~~~~~~LRpn~~L~~Liekl 49 (359)
++|||+||+.||.+|+......||+||..+.. ..+.++..+..++..+
T Consensus 34 ~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~-~~~~~~~~~~~~i~~l 81 (170)
T 3hcs_A 34 TPCGHRFCKACIIKSIRDAGHKCPVDNEILLE-NQLFPDNFAKREILSL 81 (170)
T ss_dssp CTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCG-GGCEECHHHHHHHHTS
T ss_pred CCCCCHHHHHHHHHHHHhCCCCCCCCccCcch-hhhhhhHHHHHHHhhc
Confidence 58999999999999997545689999999854 4577887777777654
No 42
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=98.29 E-value=2.3e-07 Score=65.76 Aligned_cols=30 Identities=23% Similarity=0.698 Sum_probs=26.2
Q ss_pred CCCCccccHHHHHHHHhcCCCCccccccccc
Q 018247 1 MECLHRFCRECIDKAMRLGNNECPACRTHCA 31 (359)
Q Consensus 1 t~CGHtFCR~CI~k~~~~~~~~CPvCR~~~~ 31 (359)
++|||.||..||.+|+.. ...||+||..+.
T Consensus 25 ~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~ 54 (55)
T 2ecm_A 25 LPCGHLLHRTCYEEMLKE-GYRCPLCSGPSS 54 (55)
T ss_dssp CTTSCEEETTHHHHHHHH-TCCCTTSCCSSC
T ss_pred cCCCCcccHHHHHHHHHc-CCcCCCCCCcCC
Confidence 579999999999999984 478999999863
No 43
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=98.29 E-value=1.6e-07 Score=69.37 Aligned_cols=31 Identities=42% Similarity=1.018 Sum_probs=26.8
Q ss_pred CCCCccccHHHHHHHHhcCCCCcccccccccC
Q 018247 1 MECLHRFCRECIDKAMRLGNNECPACRTHCAS 32 (359)
Q Consensus 1 t~CGHtFCR~CI~k~~~~~~~~CPvCR~~~~~ 32 (359)
++|||.||..||.+|+. ....||+||..+..
T Consensus 22 ~~C~H~fc~~Ci~~~~~-~~~~CP~Cr~~~~~ 52 (68)
T 1chc_A 22 LPCLHAFCYVCITRWIR-QNPTCPLCKVPVES 52 (68)
T ss_dssp TTTTEEESTTHHHHHHH-HSCSTTTTCCCCCC
T ss_pred cCCCCeeHHHHHHHHHh-CcCcCcCCChhhHh
Confidence 58999999999999987 35789999998753
No 44
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.27 E-value=1.1e-07 Score=70.75 Aligned_cols=32 Identities=38% Similarity=0.968 Sum_probs=27.6
Q ss_pred CCCCccccHHHHHHHHhcCCCCcccccccccCC
Q 018247 1 MECLHRFCRECIDKAMRLGNNECPACRTHCASR 33 (359)
Q Consensus 1 t~CGHtFCR~CI~k~~~~~~~~CPvCR~~~~~~ 33 (359)
++|||.||..||.+|+. ....||+||..+...
T Consensus 30 ~~CgH~fc~~Ci~~~~~-~~~~CP~Cr~~~~~~ 61 (70)
T 2ecn_A 30 LPCAHSFCQKCIDKWSD-RHRNCPICRLQMTGA 61 (70)
T ss_dssp ETTTEEECHHHHHHSSC-CCSSCHHHHHCTTCC
T ss_pred cCCCCcccHHHHHHHHH-CcCcCCCcCCcccCC
Confidence 48999999999999987 577899999988543
No 45
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.27 E-value=1.8e-07 Score=70.86 Aligned_cols=31 Identities=35% Similarity=0.937 Sum_probs=26.8
Q ss_pred CCCCccccHHHHHHHHhcCCCCcccccccccC
Q 018247 1 MECLHRFCRECIDKAMRLGNNECPACRTHCAS 32 (359)
Q Consensus 1 t~CGHtFCR~CI~k~~~~~~~~CPvCR~~~~~ 32 (359)
++|||.||..||.+|+.. ...||+||..+.+
T Consensus 42 l~C~H~fh~~Ci~~w~~~-~~~CP~Cr~~~~~ 72 (75)
T 1x4j_A 42 LPCNHEFHAKCVDKWLKA-NRTCPICRADSGP 72 (75)
T ss_dssp ETTTEEEETTHHHHHHHH-CSSCTTTCCCCCC
T ss_pred ECCCCHhHHHHHHHHHHc-CCcCcCcCCcCCC
Confidence 479999999999999974 5689999998753
No 46
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.26 E-value=3.5e-07 Score=66.91 Aligned_cols=26 Identities=38% Similarity=1.011 Sum_probs=22.5
Q ss_pred CCCCccccHHHHHHHHhc--CCCCcccc
Q 018247 1 MECLHRFCRECIDKAMRL--GNNECPAC 26 (359)
Q Consensus 1 t~CGHtFCR~CI~k~~~~--~~~~CPvC 26 (359)
++|||+||+.||.+|+.. ....||+|
T Consensus 36 ~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 36 IDCGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CTTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred eCCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 589999999999999974 35689998
No 47
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.24 E-value=4.6e-07 Score=64.66 Aligned_cols=26 Identities=38% Similarity=1.012 Sum_probs=22.5
Q ss_pred CCCCccccHHHHHHHHhc--CCCCcccc
Q 018247 1 MECLHRFCRECIDKAMRL--GNNECPAC 26 (359)
Q Consensus 1 t~CGHtFCR~CI~k~~~~--~~~~CPvC 26 (359)
++|||+||+.||.+|+.. ....||+|
T Consensus 31 ~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 31 IECGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp CSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred CCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 589999999999999764 45789998
No 48
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=98.24 E-value=2.9e-07 Score=65.36 Aligned_cols=27 Identities=37% Similarity=0.886 Sum_probs=24.4
Q ss_pred CCccccHHHHHHHHhcCCCCcccccccc
Q 018247 3 CLHRFCRECIDKAMRLGNNECPACRTHC 30 (359)
Q Consensus 3 CGHtFCR~CI~k~~~~~~~~CPvCR~~~ 30 (359)
|||.||..||.+|+. ....||+||..+
T Consensus 27 C~H~f~~~Ci~~w~~-~~~~CP~Cr~~~ 53 (55)
T 1iym_A 27 CGHGFHAECVDMWLG-SHSTCPLCRLTV 53 (55)
T ss_dssp SCCEECTTHHHHTTT-TCCSCSSSCCCS
T ss_pred CCCcccHHHHHHHHH-cCCcCcCCCCEe
Confidence 999999999999987 467899999876
No 49
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.20 E-value=5.8e-07 Score=73.26 Aligned_cols=31 Identities=35% Similarity=1.010 Sum_probs=27.1
Q ss_pred CCCCccccHHHHHHHHhcCCCCcccccccccC
Q 018247 1 MECLHRFCRECIDKAMRLGNNECPACRTHCAS 32 (359)
Q Consensus 1 t~CGHtFCR~CI~k~~~~~~~~CPvCR~~~~~ 32 (359)
++|||+||..||.+|+. ....||+||..+..
T Consensus 30 ~~CgH~fc~~Ci~~~~~-~~~~CP~Cr~~~~~ 60 (133)
T 4ap4_A 30 TECGHVFCSQCLRDSLK-NANTCPTCRKKINH 60 (133)
T ss_dssp ETTCCEEEHHHHHHHHT-TCSBCTTTCCBCTT
T ss_pred cCCCChhhHHHHHHHHH-hCCCCCCCCCcCcc
Confidence 47999999999999997 45689999998853
No 50
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.97 E-value=2.8e-06 Score=65.93 Aligned_cols=29 Identities=34% Similarity=0.813 Sum_probs=25.6
Q ss_pred CCCccccHHHHHHHHhcCCCCccccccccc
Q 018247 2 ECLHRFCRECIDKAMRLGNNECPACRTHCA 31 (359)
Q Consensus 2 ~CGHtFCR~CI~k~~~~~~~~CPvCR~~~~ 31 (359)
+|||.||..||.+|+.. ...||+||..+.
T Consensus 47 ~C~H~FH~~Ci~~Wl~~-~~~CP~CR~~~~ 75 (81)
T 2ecl_A 47 ECNHSFHNCCMSLWVKQ-NNRCPLCQQDWV 75 (81)
T ss_dssp TTSCEEEHHHHHHHTTT-CCBCTTTCCBCC
T ss_pred CCCCccChHHHHHHHHh-CCCCCCcCCCcc
Confidence 59999999999999974 568999999874
No 51
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=97.88 E-value=2.1e-06 Score=62.27 Aligned_cols=27 Identities=30% Similarity=1.033 Sum_probs=23.0
Q ss_pred CCCCccccHHHHHHHHhcCCCCccccccccc
Q 018247 1 MECLHRFCRECIDKAMRLGNNECPACRTHCA 31 (359)
Q Consensus 1 t~CGHtFCR~CI~k~~~~~~~~CPvCR~~~~ 31 (359)
++|||+||+.||..+ ...||+||..+.
T Consensus 22 l~CgH~fC~~Ci~~~----~~~CP~Cr~~~~ 48 (56)
T 1bor_A 22 LPCLHTLCSGCLEAS----GMQCPICQAPWP 48 (56)
T ss_dssp STTSCCSBTTTCSSS----SSSCSSCCSSSS
T ss_pred cCCCCcccHHHHccC----CCCCCcCCcEee
Confidence 589999999999872 457999999874
No 52
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=97.83 E-value=6.5e-06 Score=67.95 Aligned_cols=30 Identities=23% Similarity=0.492 Sum_probs=26.4
Q ss_pred CCCCccccHHHHHHHHhcCCCCccccccccc
Q 018247 1 MECLHRFCRECIDKAMRLGNNECPACRTHCA 31 (359)
Q Consensus 1 t~CGHtFCR~CI~k~~~~~~~~CPvCR~~~~ 31 (359)
++|+|.|+..||..|+. ....||+||..+.
T Consensus 71 ~~C~H~FH~~Ci~~Wl~-~~~~CP~Cr~~~~ 100 (106)
T 3dpl_R 71 GVCNHAFHFHCISRWLK-TRQVCPLDNREWE 100 (106)
T ss_dssp ETTSCEEEHHHHHHHHT-TCSBCSSSCSBCC
T ss_pred cccCcEECHHHHHHHHH-cCCcCcCCCCcce
Confidence 37999999999999997 4678999999873
No 53
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=97.78 E-value=4.2e-06 Score=63.92 Aligned_cols=26 Identities=31% Similarity=0.901 Sum_probs=23.1
Q ss_pred CCCCcc-ccHHHHHHHHhcCCCCccccccccc
Q 018247 1 MECLHR-FCRECIDKAMRLGNNECPACRTHCA 31 (359)
Q Consensus 1 t~CGHt-FCR~CI~k~~~~~~~~CPvCR~~~~ 31 (359)
++|||+ ||..||..| ..||+||..+.
T Consensus 40 ~pCgH~~~C~~C~~~~-----~~CP~Cr~~i~ 66 (74)
T 4ic3_A 40 VPCGHLVTCKQCAEAV-----DKCPMCYTVIT 66 (74)
T ss_dssp ETTCCBCCCHHHHTTC-----SBCTTTCCBCS
T ss_pred cCCCChhHHHHhhhcC-----ccCCCcCcCcc
Confidence 489999 999999887 57999999875
No 54
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=97.78 E-value=7.5e-06 Score=61.15 Aligned_cols=30 Identities=30% Similarity=0.590 Sum_probs=26.0
Q ss_pred CCCCcc-ccHHHHHHHHhcCCCCccccccccc
Q 018247 1 MECLHR-FCRECIDKAMRLGNNECPACRTHCA 31 (359)
Q Consensus 1 t~CGHt-FCR~CI~k~~~~~~~~CPvCR~~~~ 31 (359)
++|||. ||..|+.+++. ....||+||..+.
T Consensus 26 ~pCgH~~~C~~C~~~~~~-~~~~CPiCR~~i~ 56 (64)
T 2vje_A 26 GKTGHLMACFTCAKKLKK-RNKPCPVCRQPIQ 56 (64)
T ss_dssp TTEEEEEECHHHHHHHHH-TTCCCTTTCCCCC
T ss_pred CCCCChhhHHHHHHHHHH-cCCcCCCcCcchh
Confidence 389999 89999999987 4568999999874
No 55
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=97.78 E-value=7.6e-06 Score=60.95 Aligned_cols=30 Identities=20% Similarity=0.515 Sum_probs=25.9
Q ss_pred CCCCcc-ccHHHHHHHHhcCCCCccccccccc
Q 018247 1 MECLHR-FCRECIDKAMRLGNNECPACRTHCA 31 (359)
Q Consensus 1 t~CGHt-FCR~CI~k~~~~~~~~CPvCR~~~~ 31 (359)
+||||. ||..|+.+++.. ...||+||..+.
T Consensus 25 ~pCgH~~~C~~C~~~~~~~-~~~CPiCR~~i~ 55 (63)
T 2vje_B 25 GRTGHLVTCFHCARRLKKA-GASCPICKKEIQ 55 (63)
T ss_dssp TTEEEEEECHHHHHHHHHT-TCBCTTTCCBCC
T ss_pred cCCCCHhHHHHHHHHHHHh-CCcCCCcCchhh
Confidence 389998 999999998873 578999999874
No 56
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.67 E-value=1.9e-05 Score=60.18 Aligned_cols=27 Identities=30% Similarity=0.805 Sum_probs=22.7
Q ss_pred CCCCcc-ccHHHHHHHHhcCCCCcccccccccC
Q 018247 1 MECLHR-FCRECIDKAMRLGNNECPACRTHCAS 32 (359)
Q Consensus 1 t~CGHt-FCR~CI~k~~~~~~~~CPvCR~~~~~ 32 (359)
++|||. ||..|+.. ...||+||..+..
T Consensus 41 ~pCgH~~~C~~C~~~-----~~~CP~Cr~~i~~ 68 (75)
T 2ecg_A 41 VPCGHLVTCKQCAEA-----VDKCPMCYTVITF 68 (75)
T ss_dssp SSSCCCCBCHHHHHH-----CSBCTTTCCBCCC
T ss_pred ecCCCHHHHHHHhhC-----CCCCccCCceecC
Confidence 589999 99999954 3679999998854
No 57
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=97.54 E-value=2.6e-05 Score=61.62 Aligned_cols=28 Identities=32% Similarity=0.927 Sum_probs=23.6
Q ss_pred CCCccccHHHHHHHHhc----C---CCCccc--cccc
Q 018247 2 ECLHRFCRECIDKAMRL----G---NNECPA--CRTH 29 (359)
Q Consensus 2 ~CGHtFCR~CI~k~~~~----~---~~~CPv--CR~~ 29 (359)
+|||+||+.||..+|.. + ...||. |+..
T Consensus 25 ~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~ 61 (94)
T 1wim_A 25 QCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQ 61 (94)
T ss_dssp TTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred CCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence 69999999999999863 2 247999 9987
No 58
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=97.46 E-value=1.7e-05 Score=61.69 Aligned_cols=39 Identities=23% Similarity=0.568 Sum_probs=26.3
Q ss_pred CCCCcc-ccHHHHHHHHhcCCCCcccccccccCCC--CCCCChHHHH
Q 018247 1 MECLHR-FCRECIDKAMRLGNNECPACRTHCASRR--SLRDDLNYDA 44 (359)
Q Consensus 1 t~CGHt-FCR~CI~k~~~~~~~~CPvCR~~~~~~~--~LRpn~~L~~ 44 (359)
++|||. ||..|+..++ .||+||..+...- .+.++..+.+
T Consensus 34 ~pCgH~~~C~~C~~~~~-----~CP~Cr~~i~~~~~i~~p~~~~~~~ 75 (79)
T 2yho_A 34 CPCGHTVCCESCAAQLQ-----SCPVCRSRVEHVQHVYLPTHTSLLN 75 (79)
T ss_dssp ETTCBCCBCHHHHTTCS-----BCTTTCCBCCEEEECBCTTCCC---
T ss_pred ECCCCHHHHHHHHHhcC-----cCCCCCchhhCeEEEEeCcchhhhh
Confidence 489999 9999998763 7999999875431 2344544444
No 59
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=97.40 E-value=6.3e-05 Score=62.49 Aligned_cols=31 Identities=29% Similarity=0.802 Sum_probs=27.7
Q ss_pred CCCCccccHHHHHHHHhcCCCCccccccccc
Q 018247 1 MECLHRFCRECIDKAMRLGNNECPACRTHCA 31 (359)
Q Consensus 1 t~CGHtFCR~CI~k~~~~~~~~CPvCR~~~~ 31 (359)
+||.|.||.+|+..|+....+.||.|+.++.
T Consensus 18 IPCkHvFCydCa~~~~~~~~k~Cp~C~~~V~ 48 (101)
T 3vk6_A 18 IPCKHVFCYDCAILHEKKGDKMCPGCSDPVQ 48 (101)
T ss_dssp ETTCCEEEHHHHHHHHHTTCCBCTTTCCBCS
T ss_pred ccccccHHHHHHHHHHhccCCCCcCcCCeee
Confidence 5899999999999998766789999999874
No 60
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=97.17 E-value=7.7e-05 Score=55.71 Aligned_cols=37 Identities=5% Similarity=0.099 Sum_probs=29.2
Q ss_pred CCCccccHHHHHHHHhcCCCCcccccccccCCCCCCCCh
Q 018247 2 ECLHRFCRECIDKAMRLGNNECPACRTHCASRRSLRDDL 40 (359)
Q Consensus 2 ~CGHtFCR~CI~k~~~~~~~~CPvCR~~~~~~~~LRpn~ 40 (359)
+|||+||+.||.+|+.. ...||+++.++.. ..|.+++
T Consensus 21 ~sG~~yer~~I~~~l~~-~~~cP~t~~~L~~-~~Lip~~ 57 (61)
T 2bay_A 21 KSRTIFEKSLLEQYVKD-TGNDPITNEPLSI-EEIVEIV 57 (61)
T ss_dssp TTTEEEEHHHHHHHHHH-HSBCTTTCCBCCG-GGCEECC
T ss_pred CCCcEEcHHHHHHHHHh-CCCCcCCcCCCCh-hhcEECc
Confidence 69999999999999974 3469999999853 4565543
No 61
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.13 E-value=0.00014 Score=55.06 Aligned_cols=27 Identities=30% Similarity=0.945 Sum_probs=22.9
Q ss_pred CCCCcc-ccHHHHHHHHhcCCCCcccccccccC
Q 018247 1 MECLHR-FCRECIDKAMRLGNNECPACRTHCAS 32 (359)
Q Consensus 1 t~CGHt-FCR~CI~k~~~~~~~~CPvCR~~~~~ 32 (359)
+||||. ||..|+.. ...||+||..+..
T Consensus 31 ~pCgH~~~C~~C~~~-----~~~CP~CR~~i~~ 58 (68)
T 2ea5_A 31 LPCRHTCLCDGCVKY-----FQQCPMCRQFVQE 58 (68)
T ss_dssp TTTTBCCSCTTHHHH-----CSSCTTTCCCCCC
T ss_pred ECCCChhhhHHHHhc-----CCCCCCCCcchhc
Confidence 589999 99999984 3579999998854
No 62
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.05 E-value=0.00034 Score=54.87 Aligned_cols=35 Identities=17% Similarity=0.429 Sum_probs=27.9
Q ss_pred CccccHHHHHHHHhc-CCCCcccccccccCCCCCCC
Q 018247 4 LHRFCRECIDKAMRL-GNNECPACRTHCASRRSLRD 38 (359)
Q Consensus 4 GHtFCR~CI~k~~~~-~~~~CPvCR~~~~~~~~LRp 38 (359)
+|.|...||.+|+.. ....||+||..+.....++|
T Consensus 41 ~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~~~~~~P 76 (80)
T 2d8s_A 41 LHFVHQACLQQWIKSSDTRCCELCKYEFIMETKLSG 76 (80)
T ss_dssp SCCEETTHHHHHHHHHCCSBCSSSCCBCCCCCCSCC
T ss_pred CCeeCHHHHHHHHhhCCCCCCCCCCCeeecCcccCC
Confidence 499999999999975 34689999999865555554
No 63
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=93.92 E-value=0.028 Score=43.70 Aligned_cols=30 Identities=23% Similarity=0.572 Sum_probs=25.8
Q ss_pred CCCccccHHHHHHHHhcC-CCCccccccccc
Q 018247 2 ECLHRFCRECIDKAMRLG-NNECPACRTHCA 31 (359)
Q Consensus 2 ~CGHtFCR~CI~k~~~~~-~~~CPvCR~~~~ 31 (359)
.|+|.|=..||.+|++.. ...||.|+..+.
T Consensus 33 ~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~ 63 (74)
T 2ct0_A 33 TCGIRMHLPCVAKYFQSNAEPRCPHCNDYWP 63 (74)
T ss_dssp SSCCEECHHHHHHHSTTCSSCCCTTTCSCCC
T ss_pred CCCchhhHHHHHHHHHhcCCCCCCCCcCcCC
Confidence 599999999999999853 378999999864
No 64
>3h9d_A ATG8, microtubule-associated protein 1A/1B, light chain putative; autophagy, lipidation, ubiquitin-like, S protein; 2.30A {Trypanosoma brucei} SCOP: d.15.1.0
Probab=90.01 E-value=0.53 Score=39.72 Aligned_cols=81 Identities=14% Similarity=0.289 Sum_probs=64.7
Q ss_pred eEEEEeecCCCCCCCCCCCceeccCCccHHHHHHHHHhhccCCccc-EEEEEEeccccCCCCCCCCCCcccCCCcchhhh
Q 018247 251 MHLVLVSLDEQRIPGLQQPYLCCRPTLSVRHLCQYVAHQTALQASE-IEIYLVKELHSKINLPSSSNSLMIDPCKDKLQV 329 (359)
Q Consensus 251 i~l~Lvs~d~q~iP~L~~PYL~CrPTlsVkhLcqyvA~q~sl~~eE-vEi~v~k~~~~~~~~~~~~~~~~~d~~~d~le~ 329 (359)
|.+.+-......+|.|.+--.-...++||.++..+|-.++.|.+++ |=+|| .+ .. + +
T Consensus 32 IPVIvEr~~~~~~P~Ldk~KflVp~~~tv~qf~~~iRkrl~l~~~~alFl~V-n~---~~--p----------~------ 89 (119)
T 3h9d_A 32 LPIICEKVYNSDIGELDRCKFLVPSDLTVGQFVSVLRKRVQLEAESALFVYT-ND---TV--L----------P------ 89 (119)
T ss_dssp EEEEEEECTTSSCCCCSSCEEEEETTCBHHHHHHHHHHHHTCCTTSCCEEEE-TT---EE--C----------C------
T ss_pred EEEEEEecCCCCCCccCcceEEcCCCCCHHHHHHHHHHHhCCCccceEEEEE-CC---cC--C----------C------
Confidence 7777778888889999999888999999999999999999998777 55554 21 11 1 1
Q ss_pred ccccccccccccc-cCCCcceeehhhh
Q 018247 330 LNEQETLTGLQTQ-NLGHGFLLLAYQK 355 (359)
Q Consensus 330 L~~~~tl~~L~~~-~~~~g~L~l~Y~~ 355 (359)
-..||++|+-. -...|.|+|.|..
T Consensus 90 --~~~~m~~lY~~~kd~DGfLyv~Ys~ 114 (119)
T 3h9d_A 90 --SSAQMADIYSKYKDEDGFLYMKYSG 114 (119)
T ss_dssp --TTSBHHHHHHHHCCTTSCEEEEEEC
T ss_pred --ccchHHHHHHHcCCCCCeEEEEEec
Confidence 13578999998 6779999999974
No 65
>3rui_B Autophagy-related protein 8; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} SCOP: d.15.1.3 PDB: 2kq7_A 2zpn_A 3vxw_A 2kwc_A 2li5_A 3vh3_B 3vh4_B*
Probab=89.66 E-value=0.72 Score=38.82 Aligned_cols=81 Identities=15% Similarity=0.337 Sum_probs=63.4
Q ss_pred eEEEEeecCCCCCCCCCCCceeccCCccHHHHHHHHHhhccCCccc-EEEEEEeccccCCCCCCCCCCcccCCCcchhhh
Q 018247 251 MHLVLVSLDEQRIPGLQQPYLCCRPTLSVRHLCQYVAHQTALQASE-IEIYLVKELHSKINLPSSSNSLMIDPCKDKLQV 329 (359)
Q Consensus 251 i~l~Lvs~d~q~iP~L~~PYL~CrPTlsVkhLcqyvA~q~sl~~eE-vEi~v~k~~~~~~~~~~~~~~~~~d~~~d~le~ 329 (359)
|.+.+-...+..+|.|.+--.-...++||.++..+|-.++.|.+++ |=+|| . . .. ++ .
T Consensus 31 iPVIvE~~~~~~~P~ldk~KflVp~~~tv~qf~~~iRkrl~l~~~~alFl~V-n-~--~~--p~----------~----- 89 (118)
T 3rui_B 31 IPVICEKAEKSDIPEIDKRKYLVPADLTVGQFVYVIRKRIMLPPEKAIFIFV-N-D--TL--PP----------T----- 89 (118)
T ss_dssp EEEEEEECTTCCSCCCSCCEEEEETTSBHHHHHHHHHHHTTCCTTCCEEEEB-T-T--BC--CC----------T-----
T ss_pred eEEEEEeCCCCCCCccccceEEcCCCCCHHHHHHHHHHHhCcCCCccEEEEE-C-C--cc--CC----------c-----
Confidence 7777777788899999998777999999999999999999998776 33333 2 1 11 11 1
Q ss_pred ccccccccccccc-cCCCcceeehhhh
Q 018247 330 LNEQETLTGLQTQ-NLGHGFLLLAYQK 355 (359)
Q Consensus 330 L~~~~tl~~L~~~-~~~~g~L~l~Y~~ 355 (359)
+.||++|+-. -...|.|+|.|..
T Consensus 90 ---~~~m~~lY~~~kdeDGfLyv~Ys~ 113 (118)
T 3rui_B 90 ---AALMSAIYQEHKDKDGFLYVTYSG 113 (118)
T ss_dssp ---TSBHHHHHHHHCCTTSCEEEEEEE
T ss_pred ---cchHHHHHHHcCCCCCeEEEEEec
Confidence 2489999998 6789999999974
No 66
>3m95_A Autophagy related protein ATG8; alpha slash beta, receptor, transport protein; 2.40A {Bombyx mori} SCOP: d.15.1.3
Probab=87.11 E-value=1.1 Score=38.14 Aligned_cols=81 Identities=15% Similarity=0.288 Sum_probs=63.5
Q ss_pred eEEEEeecCCCCCCCCCCCceeccCCccHHHHHHHHHhhccCCccc-EEEEEEeccccCCCCCCCCCCcccCCCcchhhh
Q 018247 251 MHLVLVSLDEQRIPGLQQPYLCCRPTLSVRHLCQYVAHQTALQASE-IEIYLVKELHSKINLPSSSNSLMIDPCKDKLQV 329 (359)
Q Consensus 251 i~l~Lvs~d~q~iP~L~~PYL~CrPTlsVkhLcqyvA~q~sl~~eE-vEi~v~k~~~~~~~~~~~~~~~~~d~~~d~le~ 329 (359)
|.+.+-......+|.|.+-=.-...++||.++..+|-.++.|.+++ |=+|| . . .. ++ .
T Consensus 37 IPVIvEr~~~s~lP~LdK~KflVp~~~tv~qf~~~IRkrl~L~~~~alFl~V-n-n--~l--Ps----------~----- 95 (125)
T 3m95_A 37 VPVIVEKAPKARLGDLDKKKYLVPSDLTVGQFYFLIRKRIHLRPEDALFFFV-N-N--VI--PP----------T----- 95 (125)
T ss_dssp EEEEEEECTTCSSCCCSCCEEEEETTSBHHHHHHHHHHHTTCCTTSCCEEEB-T-T--BC--CC----------T-----
T ss_pred EEEEEEecCCCCCccccCCEEEcCCCCEeeeehhhhHhhcCCCccccEEEEE-C-C--cc--CC----------c-----
Confidence 7777777788889999998888889999999999999999998777 44443 2 1 11 11 1
Q ss_pred ccccccccccccc-cCCCcceeehhhh
Q 018247 330 LNEQETLTGLQTQ-NLGHGFLLLAYQK 355 (359)
Q Consensus 330 L~~~~tl~~L~~~-~~~~g~L~l~Y~~ 355 (359)
..||++|+.. -..-|.|+|.|..
T Consensus 96 ---s~~m~~lY~~~kdeDGfLY~~Ys~ 119 (125)
T 3m95_A 96 ---SATMGSLYQEHHDEDFFLYIAFSD 119 (125)
T ss_dssp ---TSBHHHHHHHHCCTTSCEEEEEES
T ss_pred ---cchHHHHHHHcCCCCCeEEEEecC
Confidence 2578999998 6689999999975
No 67
>2r2q_A Gamma-aminobutyric acid receptor-associated protein-like 1; autophagy, ubiquitin homolog, structural genomics consortium, SGC, microtubule; 1.65A {Homo sapiens} PDB: 2l8j_A 1kjt_A 1kot_A 3d32_A 3dow_A 1gnu_A 1klv_A 1km7_A
Probab=85.70 E-value=1.5 Score=36.08 Aligned_cols=81 Identities=17% Similarity=0.343 Sum_probs=60.8
Q ss_pred eEEEEeecCCCCCCCCCCCceeccCCccHHHHHHHHHhhccCCcccEEEEEEeccccCCCCCCCCCCcccCCCcchhhhc
Q 018247 251 MHLVLVSLDEQRIPGLQQPYLCCRPTLSVRHLCQYVAHQTALQASEIEIYLVKELHSKINLPSSSNSLMIDPCKDKLQVL 330 (359)
Q Consensus 251 i~l~Lvs~d~q~iP~L~~PYL~CrPTlsVkhLcqyvA~q~sl~~eEvEi~v~k~~~~~~~~~~~~~~~~~d~~~d~le~L 330 (359)
|.+.+-......+|-|++-=.-...++||.++..+|-.++.+.+++ =||+.-+.. . ++ .
T Consensus 28 IPVive~~~~~~~p~l~k~KflVp~~~tv~~~~~~iRk~l~l~~~~-alfl~vn~~--~--p~----------~------ 86 (110)
T 2r2q_A 28 VPVIVEKAPKARVPDLDKRKYLVPSDLTVGQFYFLIRKRIHLRPED-ALFFFVNNT--I--PP----------T------ 86 (110)
T ss_dssp EEEEEEECTTCCSCCCSCCEEEEETTCBHHHHHHHHHHHTTCCTTS-CCEEEBTTB--C--CC----------T------
T ss_pred eEEEEEecCCCCCCccceeEEEeCCCCcHHHHHHHHHHHhcCCCCC-cEEEEECCE--e--cC----------c------
Confidence 6666667777789999988888888999999999999999997665 234432221 1 11 1
Q ss_pred cccccccccccc-cCCCcceeehhh
Q 018247 331 NEQETLTGLQTQ-NLGHGFLLLAYQ 354 (359)
Q Consensus 331 ~~~~tl~~L~~~-~~~~g~L~l~Y~ 354 (359)
+.||++|+-. -..-|.|.|.|.
T Consensus 87 --~~~m~~LY~~~kd~DGfLyi~Ys 109 (110)
T 2r2q_A 87 --SATMGQLYEDNHEEDYFLYVAYS 109 (110)
T ss_dssp --TSBHHHHHHHHCCTTSCEEEEEE
T ss_pred --cChHHHHHHHcCCCCCEEEEEEe
Confidence 3578999988 677999999985
No 68
>3gs2_A E3 ubiquitin-protein ligase RING2; RING1B, CBOX, CBX7, polycomb, E3-ligase, chromosomal protein transcription regulation, chromatin regulator; 1.70A {Homo sapiens} PDB: 3ixs_A* 3h8h_A*
Probab=84.75 E-value=0.23 Score=41.72 Aligned_cols=85 Identities=22% Similarity=0.291 Sum_probs=55.2
Q ss_pred CCCCceeccCCccHHHHHHHHHhhccCCcccEEEEEEeccccCCCCCCCCCC---cccCCCcchhhhccccccccccccc
Q 018247 266 LQQPYLCCRPTLSVRHLCQYVAHQTALQASEIEIYLVKELHSKINLPSSSNS---LMIDPCKDKLQVLNEQETLTGLQTQ 342 (359)
Q Consensus 266 L~~PYL~CrPTlsVkhLcqyvA~q~sl~~eEvEi~v~k~~~~~~~~~~~~~~---~~~d~~~d~le~L~~~~tl~~L~~~ 342 (359)
.+-=|+--.++-||-|||+|+|..+.|+..+-| .+ .+..++..-... --|.+....+.+|++..||..+-..
T Consensus 21 ~~~RYIKTt~nATVDHLsKYLA~Rl~Le~~~~~----~e-~~~~~~~~~~~~~~~IYia~~~gq~~~L~gs~tLe~VneK 95 (111)
T 3gs2_A 21 AQTRYIKTSGNATVDHLSKYLAVRLALEELRSK----GE-SNQMNLDTASEKQYTIYIATASGQFTVLDGSFSLELVSEK 95 (111)
T ss_dssp CCCEEEEEETTCBHHHHHHHHHHHHHHHHHHHH----HH-SSCCSCCC--CCCEEEEEECTTSCEEECCTTSBHHHHHHH
T ss_pred hceEEEEcCCCccHHHHHHHHHHHHhHHHhhcc----cc-ccccCccccceeeeEEEEccCCCeEEEccCcccHHHHhhh
Confidence 355788888999999999999999888621110 00 000000000000 1233555677899999999999887
Q ss_pred -cCCCcceeehhhh
Q 018247 343 -NLGHGFLLLAYQK 355 (359)
Q Consensus 343 -~~~~g~L~l~Y~~ 355 (359)
|--+--|+|-|.-
T Consensus 96 ywkvnkplelYYa~ 109 (111)
T 3gs2_A 96 YWKVNKPMELYYAP 109 (111)
T ss_dssp HTCSSSCEEEEEEE
T ss_pred hccCCCCeeEEecc
Confidence 8878889988863
No 69
>1eo6_A GATE-16, golgi-associated ATPase enhancer of 16 KD; ubiquitin fold, protein binding; 1.80A {Bos taurus} SCOP: d.15.1.3
Probab=84.13 E-value=1.9 Score=35.99 Aligned_cols=82 Identities=16% Similarity=0.325 Sum_probs=61.4
Q ss_pred eEEEEeecCCCCCCCCCCCceeccCCccHHHHHHHHHhhccCCcccEEEEEEeccccCCCCCCCCCCcccCCCcchhhhc
Q 018247 251 MHLVLVSLDEQRIPGLQQPYLCCRPTLSVRHLCQYVAHQTALQASEIEIYLVKELHSKINLPSSSNSLMIDPCKDKLQVL 330 (359)
Q Consensus 251 i~l~Lvs~d~q~iP~L~~PYL~CrPTlsVkhLcqyvA~q~sl~~eEvEi~v~k~~~~~~~~~~~~~~~~~d~~~d~le~L 330 (359)
|.+.+-......+|-|++-=.-...++||.++..+|-.++.+.+++ =||+.-+.. . ++
T Consensus 29 IPVIve~~~~s~~p~l~k~KflVp~~~tv~~f~~~iRk~l~l~~~~-alfl~vn~~--~--p~----------------- 86 (117)
T 1eo6_A 29 VPVIVEKVSGSQIVDIDKRKYLVPSDITVAQFMWIIRKRIQLPSEK-AIFLFVDKT--V--PQ----------------- 86 (117)
T ss_dssp EEEEEEECTTCSSCCCSCCEEEEETTSBHHHHHHHHHHHHTCCTTS-CCEEEBTTB--C--CC-----------------
T ss_pred EEEEEEecCCCCCCcccceEEEcCCCCCHHHHHHhhHHhhcCCCCC-cEEEEECCE--e--cC-----------------
Confidence 6776667777789999988777888999999999999999997665 234432221 1 11
Q ss_pred cccccccccccc-cCCCcceeehhhh
Q 018247 331 NEQETLTGLQTQ-NLGHGFLLLAYQK 355 (359)
Q Consensus 331 ~~~~tl~~L~~~-~~~~g~L~l~Y~~ 355 (359)
-+.||++|+-. -..-|.|.|.|..
T Consensus 87 -~~~~m~~LY~~~kd~DGfLyi~Ys~ 111 (117)
T 1eo6_A 87 -SSLTMGQLYEKEKDEDGFLYVAYSG 111 (117)
T ss_dssp -TTSBHHHHHHHHCCTTSCEEEEEEC
T ss_pred -ccchHHHHHHHhCCCCCEEEEEEeC
Confidence 13578999987 6779999999974
No 70
>1wz3_A Autophagy 12B, ATG12B, APG12B; ubiquitin-fold, plant protein; 1.80A {Arabidopsis thaliana} SCOP: d.15.1.7
Probab=83.89 E-value=2.3 Score=34.49 Aligned_cols=77 Identities=16% Similarity=0.215 Sum_probs=56.4
Q ss_pred eEEEEeecCCCCCCCCCCCceeccCCccHHHHHHHHHhhccCCcccEEEEEEeccccCCCCCCCCCCcccCCCcchhhhc
Q 018247 251 MHLVLVSLDEQRIPGLQQPYLCCRPTLSVRHLCQYVAHQTALQASEIEIYLVKELHSKINLPSSSNSLMIDPCKDKLQVL 330 (359)
Q Consensus 251 i~l~Lvs~d~q~iP~L~~PYL~CrPTlsVkhLcqyvA~q~sl~~eEvEi~v~k~~~~~~~~~~~~~~~~~d~~~d~le~L 330 (359)
|.+.+.+.. .+|.|++.=.-+..+++|.++..||-.++.+. -|=+||- .. . .| +
T Consensus 14 V~V~~~~~~--~~P~l~k~KflV~~~~t~~~~~~~lRkrL~l~--alFlyvn--~~-~--~P----------s------- 67 (96)
T 1wz3_A 14 IVVHLRATG--GAPILKQSKFKVSGSDKFANVIDFLRRQLHSD--SLFVYVN--SA-F--SP----------N------- 67 (96)
T ss_dssp EEEEEEECT--TCCCCSCCEEEEETTSBTHHHHHHHHHHHTCS--SCEEEEE--EE-E--CC----------C-------
T ss_pred EEEEEEECC--CCCcccccEEEeCCCCcHHHHHHHHHHhcCCc--eEEEEEC--Cc-c--cC----------C-------
Confidence 555555553 39999999989999999999999999999998 3444432 11 1 11 1
Q ss_pred cccccccccccc-cCCCcceeehhhh
Q 018247 331 NEQETLTGLQTQ-NLGHGFLLLAYQK 355 (359)
Q Consensus 331 ~~~~tl~~L~~~-~~~~g~L~l~Y~~ 355 (359)
-++|+++|+-. .. .|.|+|.|.-
T Consensus 68 -~d~~m~~LY~~~kd-DGfLyi~Ys~ 91 (96)
T 1wz3_A 68 -PDESVIDLYNNFGF-DGKLVVNYAC 91 (96)
T ss_dssp -TTSBHHHHHHHHCB-TTBEEEEEES
T ss_pred -hhhHHHHHHHHhCC-CCEEEEEEeC
Confidence 13688999887 55 9999999974
No 71
>4gdk_A Ubiquitin-like protein ATG12; protein-protein conjugate, protein-protein complex, ubiquiti protein, E3 ligase, ubiquitin-like fold; 2.70A {Homo sapiens} PDB: 4gdl_A
Probab=83.63 E-value=1.7 Score=34.91 Aligned_cols=71 Identities=23% Similarity=0.317 Sum_probs=54.6
Q ss_pred CCCCCCCCCceeccCCccHHHHHHHHHhhccCCccc-EEEEEEeccccCCCCCCCCCCcccCCCcchhhhcccccccccc
Q 018247 261 QRIPGLQQPYLCCRPTLSVRHLCQYVAHQTALQASE-IEIYLVKELHSKINLPSSSNSLMIDPCKDKLQVLNEQETLTGL 339 (359)
Q Consensus 261 q~iP~L~~PYL~CrPTlsVkhLcqyvA~q~sl~~eE-vEi~v~k~~~~~~~~~~~~~~~~~d~~~d~le~L~~~~tl~~L 339 (359)
-.+|.|.+-=.-...+++|.++..||-.++.+++++ |=+||- +.. .| + -++|+++|
T Consensus 14 g~~P~l~k~KflVp~~~tv~~~~~~lRkrL~l~~~~alFlyVn----n~~-~P----------~--------~d~~~~~L 70 (91)
T 4gdk_A 14 GDTPIMKTKKWAVERTRTIQGLIDFIKKFLKLVASEQLFIYVN----QSF-AP----------S--------PDQEVGTL 70 (91)
T ss_dssp SSSCCCSCCEEEEETTCBHHHHHHHHHHHTTCCSSSCCEEEET----TTB-CC----------C--------TTCBHHHH
T ss_pred CCCCcccccEEEcCCCCCHHHHHHHHHHHhCCCCCCeEEEEEC----Ccc-CC----------C--------hhhHHHHH
Confidence 479999999888899999999999999999997655 555551 111 11 1 14588888
Q ss_pred ccc-cCCCcceeehhhh
Q 018247 340 QTQ-NLGHGFLLLAYQK 355 (359)
Q Consensus 340 ~~~-~~~~g~L~l~Y~~ 355 (359)
+.. . ..|.|+|.|..
T Consensus 71 y~~~k-~DGfLyv~Ys~ 86 (91)
T 4gdk_A 71 YECFG-SDGKLVLHYCK 86 (91)
T ss_dssp HHHHC-BTTEEEEEEES
T ss_pred HHHhC-CCCEEEEEEeC
Confidence 887 6 79999999964
No 72
>2zjd_A Microtubule-associated proteins 1A/1B light chain 3B precursor; autophagy, LC3, microtubule-associated protein 1 light chain 3, cytoplasm, cytoplasmic vesicle, lipoprotein; 1.56A {Homo sapiens} SCOP: d.15.1.3 PDB: 2z0e_B 2zzp_B 2z0d_B 1ugm_A 1v49_A 2k6q_A 3eci_A
Probab=82.84 E-value=1.9 Score=36.82 Aligned_cols=82 Identities=13% Similarity=0.334 Sum_probs=63.5
Q ss_pred eEEEEeecCCCC-CCCCCCCceeccCCccHHHHHHHHHhhccCCcccEEEEE-EeccccCCCCCCCCCCcccCCCcchhh
Q 018247 251 MHLVLVSLDEQR-IPGLQQPYLCCRPTLSVRHLCQYVAHQTALQASEIEIYL-VKELHSKINLPSSSNSLMIDPCKDKLQ 328 (359)
Q Consensus 251 i~l~Lvs~d~q~-iP~L~~PYL~CrPTlsVkhLcqyvA~q~sl~~eEvEi~v-~k~~~~~~~~~~~~~~~~~d~~~d~le 328 (359)
|.+.+-...... +|.|.+--.-...++||.++..+|-.++.+.+++ =||+ .-+.. . +
T Consensus 36 IPVIvEk~~~s~~~P~Ldk~KflVp~~~tv~qf~~~iRkrL~l~~~~-alFl~~vn~~--~--p---------------- 94 (130)
T 2zjd_A 36 IPVIIERYKGEKQLPVLDKTKFLVPDHVNMSELIKIIRRRLQLNANQ-AFFLLVNGHS--M--V---------------- 94 (130)
T ss_dssp EEEEEEECTTCCSSCCCSCCEEEEETTCBHHHHHHHHHHHHTCCTTC-CEEEEETTTE--E--C----------------
T ss_pred eEEEEEEcCCCCcCccccccEEEcCCCCcHHHHHHHHHHHhCCCCCc-eEEEEEECCc--c--C----------------
Confidence 777777888787 9999998888889999999999999999998776 3444 33221 1 1
Q ss_pred hccccccccccccc-cCCCcceeehhhh
Q 018247 329 VLNEQETLTGLQTQ-NLGHGFLLLAYQK 355 (359)
Q Consensus 329 ~L~~~~tl~~L~~~-~~~~g~L~l~Y~~ 355 (359)
.-+.||++|+-. -...|.|+|.|..
T Consensus 95 --~~~~~m~~lY~~~kdeDGfLyv~Ys~ 120 (130)
T 2zjd_A 95 --SVSTPISEVYESEKDEDGFLYMVYAS 120 (130)
T ss_dssp --CTTSBHHHHHHHHCCTTSCEEEEEEE
T ss_pred --CccchHHHHHHHhCCCCCEEEEEEeC
Confidence 113678999987 6789999999974
No 73
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=82.84 E-value=0.38 Score=37.70 Aligned_cols=16 Identities=25% Similarity=0.866 Sum_probs=13.9
Q ss_pred CCCCccccHHHHHHHH
Q 018247 1 MECLHRFCRECIDKAM 16 (359)
Q Consensus 1 t~CGHtFCR~CI~k~~ 16 (359)
++|+|+||..||..++
T Consensus 22 ~~C~~~~C~~Cl~~~h 37 (101)
T 2jun_A 22 VTCEVSYCDECLKATH 37 (101)
T ss_dssp TTTTEEECHHHHHHHS
T ss_pred CcCChHHhHHHCHHHh
Confidence 4799999999999844
No 74
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=82.82 E-value=0.93 Score=33.33 Aligned_cols=26 Identities=19% Similarity=0.542 Sum_probs=21.7
Q ss_pred cccHHHHHHHHhc-CCCCccccccccc
Q 018247 6 RFCRECIDKAMRL-GNNECPACRTHCA 31 (359)
Q Consensus 6 tFCR~CI~k~~~~-~~~~CPvCR~~~~ 31 (359)
.|=+.||.+|+.. +...||+|+..|.
T Consensus 32 ~~H~~Cl~~W~~~~~~~~C~~C~~~~~ 58 (60)
T 1vyx_A 32 NVHRSCLSTWLTISRNTACQICGVVYN 58 (60)
T ss_dssp SCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred hhHHHHHHHHHHhCCCCccCCCCCeee
Confidence 6668899999875 4678999999884
No 75
>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=74.62 E-value=3.6 Score=30.46 Aligned_cols=44 Identities=11% Similarity=0.271 Sum_probs=34.4
Q ss_pred EEEEeecCCCCCCCCCCCceeccCCccHHHHHHHHHhhccCCcccEEEEE
Q 018247 252 HLVLVSLDEQRIPGLQQPYLCCRPTLSVRHLCQYVAHQTALQASEIEIYL 301 (359)
Q Consensus 252 ~l~Lvs~d~q~iP~L~~PYL~CrPTlsVkhLcqyvA~q~sl~~eEvEi~v 301 (359)
.|.+..++++.+ .+.+.|+.||..|.+.|+.+++++++..-|+.
T Consensus 5 ~i~vk~~~g~~~------~~~v~~~~tV~~lK~~i~~~~~ip~~~qrL~~ 48 (85)
T 3n3k_B 5 RIVVKTLMGRTI------ILEVEPSDTIENVKAKIQDKEGIPPDQQRLIF 48 (85)
T ss_dssp EEEEECGGGCEE------EEECCTTCBHHHHHHHHHHHHCCCGGGEEEEE
T ss_pred EEEEEeCCCCEE------EEEECCCCcHHHHHHHHHHHHCCCHHHEEEEE
Confidence 334444555543 36888999999999999999999999987776
No 76
>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}
Probab=73.82 E-value=5.9 Score=29.13 Aligned_cols=48 Identities=21% Similarity=0.165 Sum_probs=36.2
Q ss_pred cCceeeEEEEeecCCCCCCCCCCCceeccCCccHHHHHHHHHhhccCCcccEEEEE
Q 018247 246 DDQLDMHLVLVSLDEQRIPGLQQPYLCCRPTLSVRHLCQYVAHQTALQASEIEIYL 301 (359)
Q Consensus 246 d~e~di~l~Lvs~d~q~iP~L~~PYL~CrPTlsVkhLcqyvA~q~sl~~eEvEi~v 301 (359)
+.++.|++ -.++++.+ .+.+.|+.||.+|.+.|+..++.++++.-|+.
T Consensus 2 ~~~m~i~V--k~~~g~~~------~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~ 49 (79)
T 3phx_B 2 DEPLSILV--RNNKGRSS------TYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTF 49 (79)
T ss_dssp -CCEEEEE--ECTTSCEE------EEEECTTSBHHHHHHHHHHHHTCCGGGEEEEE
T ss_pred CCCEEEEE--EeCCCCEE------EEEECCcChHHHHHHHHHhhcCCCHHHEEEEE
Confidence 34544444 44566554 37889999999999999999999999987764
No 77
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1
Probab=73.48 E-value=4.3 Score=29.91 Aligned_cols=45 Identities=11% Similarity=0.290 Sum_probs=35.0
Q ss_pred eEEEEeecCCCCCCCCCCCceeccCCccHHHHHHHHHhhccCCcccEEEEE
Q 018247 251 MHLVLVSLDEQRIPGLQQPYLCCRPTLSVRHLCQYVAHQTALQASEIEIYL 301 (359)
Q Consensus 251 i~l~Lvs~d~q~iP~L~~PYL~CrPTlsVkhLcqyvA~q~sl~~eEvEi~v 301 (359)
+.|.+..++++.+ .+.+.|+.||.+|++.|+.+++++++..-|+.
T Consensus 4 m~i~vk~~~g~~~------~~~v~~~~tV~~lK~~i~~~~~i~~~~qrL~~ 48 (85)
T 3mtn_B 4 MQIFVKTLTGKTI------TLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF 48 (85)
T ss_dssp EEEEEECTTSCEE------EEEECTTCBHHHHHHHHHHHHCCCGGGCEEEE
T ss_pred EEEEEEcCCCCEE------EEEECCCCCHHHHHHHHHHHHCcChHHEEEEE
Confidence 3444445555443 37888999999999999999999999987775
No 78
>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...
Probab=73.31 E-value=5.9 Score=28.33 Aligned_cols=32 Identities=6% Similarity=0.214 Sum_probs=29.2
Q ss_pred ceeccCCccHHHHHHHHHhhccCCcccEEEEE
Q 018247 270 YLCCRPTLSVRHLCQYVAHQTALQASEIEIYL 301 (359)
Q Consensus 270 YL~CrPTlsVkhLcqyvA~q~sl~~eEvEi~v 301 (359)
.+.+.|+.||..|++.|+.+++++++..-|+.
T Consensus 14 ~i~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~ 45 (76)
T 3a9j_A 14 TLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF 45 (76)
T ss_dssp EEECCTTCBHHHHHHHHHHHHCCCGGGEEEEE
T ss_pred EEEECCCCcHHHHHHHHHHHHCcCHHHeEEEE
Confidence 47888999999999999999999999988876
No 79
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=72.35 E-value=2.8 Score=34.19 Aligned_cols=30 Identities=37% Similarity=0.874 Sum_probs=25.7
Q ss_pred CCCccccHHHHHHHHhcCCCCccccccccc
Q 018247 2 ECLHRFCRECIDKAMRLGNNECPACRTHCA 31 (359)
Q Consensus 2 ~CGHtFCR~CI~k~~~~~~~~CPvCR~~~~ 31 (359)
+|+--.||.|.+--...++..||+|++.+.
T Consensus 40 eC~FPvCrpCyEYErkeG~q~CpqCktrYk 69 (93)
T 1weo_A 40 ECGFPACRPCYEYERREGTQNCPQCKTRYK 69 (93)
T ss_dssp SSCCCCCHHHHHHHHHTSCSSCTTTCCCCC
T ss_pred ccCChhhHHHHHHHHhccCccccccCCccc
Confidence 588889999998777667889999999884
No 80
>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B
Probab=70.97 E-value=5.6 Score=30.35 Aligned_cols=49 Identities=8% Similarity=0.238 Sum_probs=37.2
Q ss_pred ccCceeeEEEEeecCCCCCCCCCCCceeccCCccHHHHHHHHHhhccCCcccEEEEE
Q 018247 245 KDDQLDMHLVLVSLDEQRIPGLQQPYLCCRPTLSVRHLCQYVAHQTALQASEIEIYL 301 (359)
Q Consensus 245 ~d~e~di~l~Lvs~d~q~iP~L~~PYL~CrPTlsVkhLcqyvA~q~sl~~eEvEi~v 301 (359)
....+.|+ +-.++++.+ .+.+.|+.||..|++.|+.+++++++..-|+.
T Consensus 14 ~~~~m~i~--Vk~~~g~~~------~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~ 62 (91)
T 3v6c_B 14 PRGSMQIF--VNTLTGTHI------TLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF 62 (91)
T ss_dssp CCCSEEEE--EECTTSCEE------EEEECTTCBHHHHHHHHHHHHCCCGGGCEEEE
T ss_pred CCCeEEEE--EEeCCCCEE------EEEECCCCCHHHHHHHHHhhhCCChhhEEEEE
Confidence 34454444 445566654 47889999999999999999999999887665
No 81
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=69.40 E-value=1.5 Score=36.12 Aligned_cols=28 Identities=25% Similarity=0.713 Sum_probs=23.5
Q ss_pred CccccHHHHHHHHhcCCCCcccccccccC
Q 018247 4 LHRFCRECIDKAMRLGNNECPACRTHCAS 32 (359)
Q Consensus 4 GHtFCR~CI~k~~~~~~~~CPvCR~~~~~ 32 (359)
-|-+|..|+...+. -...||+|..++..
T Consensus 46 dHYLCl~CLtlmL~-~SdrCpIC~~pLPt 73 (99)
T 2ko5_A 46 NHYLCLNCLTLLLS-VSNRCPICKMPLPT 73 (99)
T ss_dssp SCEEEHHHHHHTCS-SSSEETTTTEECCC
T ss_pred chhhHHHHHHHHHh-hccCCcccCCcCCc
Confidence 69999999999876 46789999998743
No 82
>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A
Probab=67.11 E-value=9.4 Score=27.24 Aligned_cols=32 Identities=13% Similarity=0.187 Sum_probs=29.1
Q ss_pred ceeccCCccHHHHHHHHHhhccCCcccEEEEE
Q 018247 270 YLCCRPTLSVRHLCQYVAHQTALQASEIEIYL 301 (359)
Q Consensus 270 YL~CrPTlsVkhLcqyvA~q~sl~~eEvEi~v 301 (359)
.+.+.|+.||..|++.|+.+++++++..-|+.
T Consensus 14 ~~~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~ 45 (76)
T 1ndd_A 14 EIDIEPTDKVERIKERVEEKEGIPPQQQRLIY 45 (76)
T ss_dssp EEECCTTCBHHHHHHHHHHHHCCCGGGEEEEE
T ss_pred EEEECCCChHHHHHHHHHHHHCcChHHEEEEE
Confidence 47888999999999999999999999988875
No 83
>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S
Probab=66.78 E-value=8.8 Score=27.71 Aligned_cols=44 Identities=7% Similarity=0.198 Sum_probs=34.6
Q ss_pred eEEEEeecCCCCCCCCCCCceeccCCccHHHHHHHHHhhccCCcccEEEEE
Q 018247 251 MHLVLVSLDEQRIPGLQQPYLCCRPTLSVRHLCQYVAHQTALQASEIEIYL 301 (359)
Q Consensus 251 i~l~Lvs~d~q~iP~L~~PYL~CrPTlsVkhLcqyvA~q~sl~~eEvEi~v 301 (359)
+.|.+-. +++.+ .+.+.|+.||..|++.|+.+++++++..-|+.
T Consensus 5 m~i~vk~-~g~~~------~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~ 48 (77)
T 2bwf_A 5 LNIHIKS-GQDKW------EVNVAPESTVLQFKEAINKANGIPVANQRLIY 48 (77)
T ss_dssp EEEEEEE-TTEEE------EEEECTTCBHHHHHHHHHHHHCCCGGGEEEEE
T ss_pred EEEEEEE-CCEEE------EEEECCCCcHHHHHHHHHHHhCCCHHHEEEEE
Confidence 4444444 55442 47888999999999999999999999988875
No 84
>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A
Probab=64.17 E-value=9.2 Score=29.12 Aligned_cols=44 Identities=9% Similarity=0.264 Sum_probs=34.8
Q ss_pred EEEEeecCCCCCCCCCCCceeccCCccHHHHHHHHHhhccCCcccEEEEE
Q 018247 252 HLVLVSLDEQRIPGLQQPYLCCRPTLSVRHLCQYVAHQTALQASEIEIYL 301 (359)
Q Consensus 252 ~l~Lvs~d~q~iP~L~~PYL~CrPTlsVkhLcqyvA~q~sl~~eEvEi~v 301 (359)
.|.+-.++++.+ .|.+.|+.||.+|.+.|+.+++++++..-|+.
T Consensus 3 ~i~vk~~~g~~~------~~~v~~~~TV~~LK~~i~~~~gip~~~qrL~~ 46 (96)
T 3k9o_B 3 QIFVKTLTGKTI------TLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF 46 (96)
T ss_dssp EEEEEETTCCEE------EEECCTTCBHHHHHHHHHHHHCCCGGGEEEEE
T ss_pred EEEEEeCCCCEE------EEEECCCCCHHHHHHHHHhhhCCChhHEEEEE
Confidence 344445566543 37888999999999999999999999987775
No 85
>3w1s_C Ubiquitin-like protein ATG12; ubiquitin fold, E3-like, ATG3 binding, isopeptide bond betwe Gly186 and ATG5 Lys149, ligase; 2.60A {Saccharomyces cerevisiae S288C}
Probab=63.90 E-value=7 Score=31.38 Aligned_cols=69 Identities=14% Similarity=0.219 Sum_probs=45.4
Q ss_pred CCCCCCCCCceeccCCccHHHHHHHHHhhccCCcccEEEEEEeccccCCCCCCCCCCcccCCCcchhhhccccccccccc
Q 018247 261 QRIPGLQQPYLCCRPTLSVRHLCQYVAHQTALQASEIEIYLVKELHSKINLPSSSNSLMIDPCKDKLQVLNEQETLTGLQ 340 (359)
Q Consensus 261 q~iP~L~~PYL~CrPTlsVkhLcqyvA~q~sl~~eEvEi~v~k~~~~~~~~~~~~~~~~~d~~~d~le~L~~~~tl~~L~ 340 (359)
-.+|.|++-=.-...+++|.++..||-.++.+ +-|=+||- +.. . |+ -++++++|+
T Consensus 17 g~~P~l~k~KflV~~~~t~~~~v~~lRkrL~l--~alFlyVN----n~f--~---------Ps--------~d~~~~~Ly 71 (91)
T 3w1s_C 17 GSIGQLKPSVCKISMSQSFAMVILFLKRRLKM--DHVYCYIN----NSF--A---------PS--------PQQNIGELW 71 (91)
T ss_dssp CC-------EEEEETTSBHHHHHHHHHHHHTC--SCCEEEET----TTB--C---------CC--------TTSBHHHHH
T ss_pred CCCCcccccEEEcCCCCCHHHHHHHHHHhhCC--ceEEEEEC----Ccc--C---------CC--------cccHHHHHH
Confidence 47999999988888999999999999999999 44555551 111 1 11 145788888
Q ss_pred cc-cCCCcceeehhhh
Q 018247 341 TQ-NLGHGFLLLAYQK 355 (359)
Q Consensus 341 ~~-~~~~g~L~l~Y~~ 355 (359)
.. . ..|.|++.|..
T Consensus 72 ~~fk-~dg~Lyv~Ys~ 86 (91)
T 3w1s_C 72 MQFK-TNDELIVSYCA 86 (91)
T ss_dssp HHHC-BTTEEEEEEEC
T ss_pred HHhC-CCCEEEEEEeC
Confidence 87 5 58999999964
No 86
>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=63.81 E-value=12 Score=27.21 Aligned_cols=46 Identities=13% Similarity=0.167 Sum_probs=35.5
Q ss_pred ceeeEEEEeecCCCCCCCCCCCceeccCCccHHHHHHHHHhhccCCcccEEEEE
Q 018247 248 QLDMHLVLVSLDEQRIPGLQQPYLCCRPTLSVRHLCQYVAHQTALQASEIEIYL 301 (359)
Q Consensus 248 e~di~l~Lvs~d~q~iP~L~~PYL~CrPTlsVkhLcqyvA~q~sl~~eEvEi~v 301 (359)
.+.|.+. .++++.+ .+.+.|+.||..|++.|+.+++++++..-|+.
T Consensus 7 ~m~i~vk--~~~g~~~------~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~ 52 (81)
T 2dzi_A 7 GMQLTVK--ALQGREC------SLQVPEDELVSTLKQLVSEKLNVPVRQQRLLF 52 (81)
T ss_dssp SEEEEEE--ETTSCEE------EEEECSSCBHHHHHHHHHHHTCCCTTTCEEEE
T ss_pred cEEEEEE--eCCCCEE------EEEECCCCcHHHHHHHHHHHHCcCHHHEEEEE
Confidence 3444443 5555443 37888999999999999999999999888875
No 87
>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=62.69 E-value=13 Score=27.70 Aligned_cols=45 Identities=13% Similarity=0.169 Sum_probs=35.2
Q ss_pred eEEEEeecCCCCCCCCCCCceeccCCccHHHHHHHHHhhccCCcccEEEEE
Q 018247 251 MHLVLVSLDEQRIPGLQQPYLCCRPTLSVRHLCQYVAHQTALQASEIEIYL 301 (359)
Q Consensus 251 i~l~Lvs~d~q~iP~L~~PYL~CrPTlsVkhLcqyvA~q~sl~~eEvEi~v 301 (359)
+.|.+-.++++.+ .+.+.|+.||..|++.|+.+++++++..-|+.
T Consensus 8 m~i~Vk~~~g~~~------~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~~ 52 (87)
T 1wh3_A 8 IQVFVKNPDGGSY------AYAINPNSFILGLKQQIEDQQGLPKKQQQLEF 52 (87)
T ss_dssp EEEEEEETTTEEE------EEEECSSSBHHHHHHHHHHHTCCCTTTEEEEE
T ss_pred EEEEEEcCCCCEE------EEEeCCCChHHHHHHHHHHHhCCChHHEEEEE
Confidence 3444445555543 47888999999999999999999999988875
No 88
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=61.31 E-value=3 Score=34.61 Aligned_cols=13 Identities=38% Similarity=0.943 Sum_probs=11.2
Q ss_pred cccHHHHHHHHhc
Q 018247 6 RFCRECIDKAMRL 18 (359)
Q Consensus 6 tFCR~CI~k~~~~ 18 (359)
-|||.|+.+|...
T Consensus 42 GFCRNCLskWy~~ 54 (105)
T 2o35_A 42 GFCRNCLSNWYRE 54 (105)
T ss_dssp SCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4999999999863
No 89
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=60.81 E-value=3.1 Score=34.48 Aligned_cols=12 Identities=42% Similarity=1.068 Sum_probs=10.8
Q ss_pred cccHHHHHHHHh
Q 018247 6 RFCRECIDKAMR 17 (359)
Q Consensus 6 tFCR~CI~k~~~ 17 (359)
-|||.|+.+|..
T Consensus 41 GFCRNCLskWy~ 52 (104)
T 3fyb_A 41 DFCRNCLAKWLM 52 (104)
T ss_dssp SCCHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 499999999986
No 90
>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I
Probab=60.42 E-value=9.4 Score=28.36 Aligned_cols=45 Identities=16% Similarity=0.239 Sum_probs=35.2
Q ss_pred eEEEEeecCCCCCCCCCCCceeccCCccHHHHHHHHHhhccCCcccEEEEE
Q 018247 251 MHLVLVSLDEQRIPGLQQPYLCCRPTLSVRHLCQYVAHQTALQASEIEIYL 301 (359)
Q Consensus 251 i~l~Lvs~d~q~iP~L~~PYL~CrPTlsVkhLcqyvA~q~sl~~eEvEi~v 301 (359)
+.+.+-.++++.+ .|.+.|+.||.+|++.|+.+++++++..-|+.
T Consensus 13 m~i~vk~~~g~~~------~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~ 57 (88)
T 3dbh_I 13 MLIKVKTLTGKEI------EIDIEPTDKVERIKERVEEKEGIPPQQQRLIY 57 (88)
T ss_dssp EEEEEECTTSCEE------EEEECTTCBHHHHHHHHHHHHCCCGGGCCEEE
T ss_pred EEEEEEcCCCCEE------EEEECCCCCHHHHHHHHHHHHCcCHHHEEEEE
Confidence 4444455566554 47889999999999999999999998876655
No 91
>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens}
Probab=60.37 E-value=15 Score=27.90 Aligned_cols=49 Identities=20% Similarity=0.152 Sum_probs=36.6
Q ss_pred ccCceeeEEEEeecCCCCCCCCCCCceeccCCccHHHHHHHHHhhccCCcccEEEEE
Q 018247 245 KDDQLDMHLVLVSLDEQRIPGLQQPYLCCRPTLSVRHLCQYVAHQTALQASEIEIYL 301 (359)
Q Consensus 245 ~d~e~di~l~Lvs~d~q~iP~L~~PYL~CrPTlsVkhLcqyvA~q~sl~~eEvEi~v 301 (359)
|+.++.|.+ -.++++.+ .+.+.|+-||..|++.|+.+++++++..-|+.
T Consensus 1 m~~~m~I~V--k~~~g~~~------~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~~ 49 (88)
T 2hj8_A 1 MDEPLSILV--RNNKGRSS------TYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTF 49 (88)
T ss_dssp -CCEEEEEE--EETTSCEE------EEEEESSSBHHHHHHHHHHHTCSCTTTEEEES
T ss_pred CCccEEEEE--ECCCCCEE------EEEECCCCcHHHHHHHHHHHhCCChhHEEEEE
Confidence 344544444 44555544 47888999999999999999999999887764
No 92
>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1
Probab=58.82 E-value=12 Score=28.58 Aligned_cols=45 Identities=9% Similarity=0.266 Sum_probs=36.4
Q ss_pred eEEEEeecCCCCCCCCCCCceeccCCccHHHHHHHHHhhccCCcccEEEEE
Q 018247 251 MHLVLVSLDEQRIPGLQQPYLCCRPTLSVRHLCQYVAHQTALQASEIEIYL 301 (359)
Q Consensus 251 i~l~Lvs~d~q~iP~L~~PYL~CrPTlsVkhLcqyvA~q~sl~~eEvEi~v 301 (359)
+.+.+..++++.+ .+.+.|+.||..|++-|+.+++++++..-|+.
T Consensus 10 ~~i~v~~~~G~~~------~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~ 54 (88)
T 1sif_A 10 LQLFIKTLTGKTF------TVEMEPSDTIENLKAKIQDKEGIPPDQQRLIF 54 (88)
T ss_dssp CEEEEEETTSCEE------EEECCTTSBHHHHHHHHHHHHCCCGGGCEEEE
T ss_pred eEEEEEeCCCCEE------EEEECCCChHHHHHHHHHHHHCcChhhEEEEE
Confidence 3444556777654 37889999999999999999999999988875
No 93
>3q3f_A Ribonuclease/ubiquitin chimeric protein; domain SWAP, oligomerization, ubiquitin insertion, hydrolase binding; 2.17A {Bacillus amyloliquefaciens}
Probab=57.80 E-value=11 Score=33.79 Aligned_cols=46 Identities=9% Similarity=0.242 Sum_probs=36.6
Q ss_pred eeEEEEeecCCCCCCCCCCCceeccCCccHHHHHHHHHhhccCCcccEEEEE
Q 018247 250 DMHLVLVSLDEQRIPGLQQPYLCCRPTLSVRHLCQYVAHQTALQASEIEIYL 301 (359)
Q Consensus 250 di~l~Lvs~d~q~iP~L~~PYL~CrPTlsVkhLcqyvA~q~sl~~eEvEi~v 301 (359)
.+.|.+-.++++.++ |.+.|+.||.+|.+-|+.++++++++.-|+.
T Consensus 105 eMqI~VKtl~Gkt~~------l~V~~s~TV~~LK~kI~~~~gIp~~~QrLi~ 150 (189)
T 3q3f_A 105 GGQIFVKTLTGKTIT------LEVEPSDTIENVKAKIQDKEGIPPDQQRLIF 150 (189)
T ss_dssp CEEEEEECTTSCEEE------EEECTTCBHHHHHHHHHHHHCCCGGGCCEEE
T ss_pred ceeeeeecCCCCEEE------EEeCCCCcHHHHHHHHHhccCCCHHHEEEEE
Confidence 345555566766654 7889999999999999999999999887764
No 94
>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B
Probab=57.00 E-value=18 Score=27.89 Aligned_cols=33 Identities=6% Similarity=0.209 Sum_probs=29.7
Q ss_pred ceeccCCccHHHHHHHHHhhccCCcccEEEEEE
Q 018247 270 YLCCRPTLSVRHLCQYVAHQTALQASEIEIYLV 302 (359)
Q Consensus 270 YL~CrPTlsVkhLcqyvA~q~sl~~eEvEi~v~ 302 (359)
.+.+.|+.||..|++.|+.+++++++..-|+..
T Consensus 14 ~~~v~~~~TV~~LK~~I~~~~gi~~~~qrL~~~ 46 (98)
T 1yx5_B 14 TLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFA 46 (98)
T ss_dssp EEECCTTCBHHHHHHHHHHHTCCCGGGEEEEET
T ss_pred EEEECCCCcHHHHHHHHHHHHCcChhhEEEEEC
Confidence 478889999999999999999999999888763
No 95
>3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A
Probab=56.80 E-value=15 Score=29.45 Aligned_cols=45 Identities=11% Similarity=0.290 Sum_probs=36.1
Q ss_pred eEEEEeecCCCCCCCCCCCceeccCCccHHHHHHHHHhhccCCcccEEEEE
Q 018247 251 MHLVLVSLDEQRIPGLQQPYLCCRPTLSVRHLCQYVAHQTALQASEIEIYL 301 (359)
Q Consensus 251 i~l~Lvs~d~q~iP~L~~PYL~CrPTlsVkhLcqyvA~q~sl~~eEvEi~v 301 (359)
+.|.+-.++++.+ .+.+.|+.||.+|++.|+.+++++++..-|+.
T Consensus 36 m~I~Vk~~~G~~~------~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~ 80 (111)
T 3vdz_A 36 MQIFVKTLTGKTI------TLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF 80 (111)
T ss_dssp EEEEEECSSSCEE------EEEECTTCBHHHHHHHHHHHHCCCGGGEEEEE
T ss_pred EEEEEEeCCCCEE------EEEeCCCCCHHHHHHHHHHHhCCChHHEEEEE
Confidence 4555555666654 37899999999999999999999999887765
No 96
>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens}
Probab=56.09 E-value=18 Score=27.00 Aligned_cols=48 Identities=15% Similarity=0.280 Sum_probs=36.6
Q ss_pred cCceeeEEEEeecCCCCCCCCCCCceeccCCccHHHHHHHHHhhccCCcccEEEEE
Q 018247 246 DDQLDMHLVLVSLDEQRIPGLQQPYLCCRPTLSVRHLCQYVAHQTALQASEIEIYL 301 (359)
Q Consensus 246 d~e~di~l~Lvs~d~q~iP~L~~PYL~CrPTlsVkhLcqyvA~q~sl~~eEvEi~v 301 (359)
...+.|++ -.++++.+ .+.+.|+.||.+|++.|+.+++.+++..-|+.
T Consensus 15 ~~~m~i~V--k~~~g~~~------~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~ 62 (88)
T 4eew_A 15 PDSLEVLV--KTLDSQTR------TFIVGAQMNVKEFKEHIAASVSIPSEKQRLIY 62 (88)
T ss_dssp CCEEEEEE--EETTSCEE------EEEEETTCBHHHHHHHHHHHHTCCGGGEEEEE
T ss_pred CCeEEEEE--EcCCCCEE------EEEECCCCCHHHHHHHHHHHhCCCHHHEEEEE
Confidence 44544544 44566553 47889999999999999999999999987664
No 97
>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A
Probab=55.97 E-value=16 Score=27.52 Aligned_cols=47 Identities=15% Similarity=0.291 Sum_probs=35.8
Q ss_pred CceeeEEEEeecCCCCCCCCCCCceeccCCccHHHHHHHHHhhccCCcccEEEEE
Q 018247 247 DQLDMHLVLVSLDEQRIPGLQQPYLCCRPTLSVRHLCQYVAHQTALQASEIEIYL 301 (359)
Q Consensus 247 ~e~di~l~Lvs~d~q~iP~L~~PYL~CrPTlsVkhLcqyvA~q~sl~~eEvEi~v 301 (359)
..+.|++ -.++++.+ .|.+.|+.||.+|++.|+.+++++++..-|+.
T Consensus 4 ~~m~i~V--k~~~g~~~------~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~ 50 (90)
T 4dwf_A 4 DSLEVLV--KTLDSQTR------TFIVGAQMNVKEFKEHIAASVSIPSEKQRLIY 50 (90)
T ss_dssp CEEEEEE--EETTCCEE------EEEEETTCBHHHHHHHHHHHHTCCGGGEEEEE
T ss_pred cEEEEEE--EcCCCCEE------EEEECCCCCHHHHHHHHHHHhCCCHHHEEEEE
Confidence 3444444 44566554 37889999999999999999999999987765
No 98
>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}
Probab=55.92 E-value=13 Score=28.80 Aligned_cols=50 Identities=6% Similarity=0.177 Sum_probs=36.0
Q ss_pred cccCceeeEEEEeecCCCCCCCCCCCceeccCCccHHHHHHHHHhhccCCcccEEEEE
Q 018247 244 EKDDQLDMHLVLVSLDEQRIPGLQQPYLCCRPTLSVRHLCQYVAHQTALQASEIEIYL 301 (359)
Q Consensus 244 e~d~e~di~l~Lvs~d~q~iP~L~~PYL~CrPTlsVkhLcqyvA~q~sl~~eEvEi~v 301 (359)
..+..+.|.+. .++++.+ .|.+.|+.||..|++.|+.+++++++..-|+.
T Consensus 18 ~~~~~m~I~Vk--~~~g~~~------~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~ 67 (98)
T 4hcn_B 18 FQGRPMQIFVK--TLTGKTI------TLEVESSDTIDNVKSKIQDKEGIPPDQQRLIF 67 (98)
T ss_dssp ----CCEEEEE--ETTCCEE------EEECCTTCBHHHHHHHHHHHHCCCGGGCEEEE
T ss_pred CCCCeEEEEEE--eCCCCEE------EEEECCCCcHHHHHHHHHHHhCCChhHEEEEE
Confidence 44556555554 4566553 37788999999999999999999999887664
No 99
>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B
Probab=54.74 E-value=17 Score=27.59 Aligned_cols=42 Identities=14% Similarity=0.214 Sum_probs=33.8
Q ss_pred EEeecCCCCCCCCCCCceeccCCccHHHHHHHHHhhccCCcccEEEEE
Q 018247 254 VLVSLDEQRIPGLQQPYLCCRPTLSVRHLCQYVAHQTALQASEIEIYL 301 (359)
Q Consensus 254 ~Lvs~d~q~iP~L~~PYL~CrPTlsVkhLcqyvA~q~sl~~eEvEi~v 301 (359)
.+-.++++.+ .+.+.|+.||..|.+.|+.+++.+++..-|+.
T Consensus 4 ~Vk~~~g~~~------~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~ 45 (88)
T 4fbj_B 4 KVKTLTGKEI------EIDIEPTDKVERIKERVEEKEGIPPQQQRLIY 45 (88)
T ss_dssp EEEETTCCEE------EEECCTTCBHHHHHHHHHHHHCCCGGGCEEEE
T ss_pred EEEcCCCCEE------EEEECCCCCHHHHHHHHHHHHCcChhHEEEEE
Confidence 3344566554 37889999999999999999999999887765
No 100
>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B
Probab=54.03 E-value=16 Score=26.78 Aligned_cols=45 Identities=11% Similarity=0.252 Sum_probs=36.4
Q ss_pred eEEEEeecCCCCCCCCCCCceeccCCccHHHHHHHHHhhccCCcccEEEEE
Q 018247 251 MHLVLVSLDEQRIPGLQQPYLCCRPTLSVRHLCQYVAHQTALQASEIEIYL 301 (359)
Q Consensus 251 i~l~Lvs~d~q~iP~L~~PYL~CrPTlsVkhLcqyvA~q~sl~~eEvEi~v 301 (359)
|.|.+-.++++.+ .|.+.|+-||..|.+.++.+.+++++..-++.
T Consensus 4 m~i~vk~~~g~~~------~~~v~~~~tv~~lk~~i~~~~gi~~~~qrL~~ 48 (79)
T 2uyz_B 4 IKLKVIGQDSSEI------HFKVKMTTHLKKLKESYCQRQGVPMNSLRFLF 48 (79)
T ss_dssp EEEEEECTTCCEE------EEEEETTSCTHHHHHHHHHHHTCCGGGEEEEE
T ss_pred EEEEEECCCCCEE------EEEECCCChHHHHHHHHHHHHCCCcccEEEEE
Confidence 4555566776654 47899999999999999999999998877755
No 101
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=52.88 E-value=10 Score=41.96 Aligned_cols=48 Identities=10% Similarity=0.062 Sum_probs=39.6
Q ss_pred CCCC-ccccHHHHHHHHhcCCCCcccccccccCCCCCCCChHHHHHHHHHC
Q 018247 1 MECL-HRFCRECIDKAMRLGNNECPACRTHCASRRSLRDDLNYDALIAALY 50 (359)
Q Consensus 1 t~CG-HtFCR~CI~k~~~~~~~~CPvCR~~~~~~~~LRpn~~L~~Liekl~ 50 (359)
++-| ++|=|.+|.+|+.. ...||.-|.++. ...+.||+.|...|+.+.
T Consensus 907 lpsG~~TydR~~I~~wl~~-~~tdP~Tr~~L~-~~~liPN~~Lk~~I~~w~ 955 (968)
T 3m62_A 907 LPASKMNIDRSTIKAHLLS-DSTDPFNRMPLK-LEDVTPNEELRQKILCFK 955 (968)
T ss_dssp CTTTCCEEEHHHHHHHHTT-CCBCTTTCCBCC-GGGCEECHHHHHHHHHHH
T ss_pred cCCCCEEECHHHHHHHHhc-CCCCCCCCCCCC-cccccccHHHHHHHHHHH
Confidence 3567 69999999999974 568999999985 356999999999887663
No 102
>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C
Probab=50.11 E-value=21 Score=27.72 Aligned_cols=46 Identities=11% Similarity=0.233 Sum_probs=37.7
Q ss_pred eEEEEeecCCCCCCCCCCCceeccCCccHHHHHHHHHhhccCCcccEEEEEE
Q 018247 251 MHLVLVSLDEQRIPGLQQPYLCCRPTLSVRHLCQYVAHQTALQASEIEIYLV 302 (359)
Q Consensus 251 i~l~Lvs~d~q~iP~L~~PYL~CrPTlsVkhLcqyvA~q~sl~~eEvEi~v~ 302 (359)
|.|.+-.++++.+ .|.+.|+-||..|.+.++.+.+++++..-++..
T Consensus 22 m~I~Vk~~~g~~~------~l~v~~~~tv~~lK~~i~~~~gip~~~qrLif~ 67 (97)
T 1wyw_B 22 IKLKVIGQDSSEI------HFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFE 67 (97)
T ss_dssp EEEEEECTTCCEE------EEEEETTSCTHHHHHHHHHHHTCCGGGEEEEET
T ss_pred EEEEEEeCCCCEE------EEEECCCCcHHHHHHHHHHHHCCChhhEEEEEC
Confidence 5666666777765 488999999999999999999999988776653
No 103
>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens}
Probab=49.83 E-value=26 Score=27.83 Aligned_cols=45 Identities=11% Similarity=0.290 Sum_probs=35.8
Q ss_pred eEEEEeecCCCCCCCCCCCceeccCCccHHHHHHHHHhhccCCcccEEEEE
Q 018247 251 MHLVLVSLDEQRIPGLQQPYLCCRPTLSVRHLCQYVAHQTALQASEIEIYL 301 (359)
Q Consensus 251 i~l~Lvs~d~q~iP~L~~PYL~CrPTlsVkhLcqyvA~q~sl~~eEvEi~v 301 (359)
+.|.+-.++++.+ .+.+.|+.||..|++.|+.+++++++..-|+.
T Consensus 36 m~I~Vk~~~g~~~------~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~ 80 (111)
T 2ojr_A 36 MQIFVKTLTGKTI------TLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF 80 (111)
T ss_dssp EEEEEECSSSCEE------EEEECTTCBHHHHHHHHHHHHCCCTTTEEEEE
T ss_pred EEEEEEcCCCCEE------EEEeCCCCCHHHHHHHHHHHHCcCcccEEEEE
Confidence 4555555666543 47889999999999999999999999888765
No 104
>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=49.56 E-value=13 Score=28.46 Aligned_cols=47 Identities=6% Similarity=0.061 Sum_probs=35.2
Q ss_pred cCceeeEEEEeecCCCCCCCCCCCceeccCCccHHHHHHHHHhhccCCcccEEEEE
Q 018247 246 DDQLDMHLVLVSLDEQRIPGLQQPYLCCRPTLSVRHLCQYVAHQTALQASEIEIYL 301 (359)
Q Consensus 246 d~e~di~l~Lvs~d~q~iP~L~~PYL~CrPTlsVkhLcqyvA~q~sl~~eEvEi~v 301 (359)
...+.|.+.. + ++.+ .|.+.|+.||..|++.|+.+++++++..-|+.
T Consensus 15 ~~~m~i~Vk~--~-g~~~------~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~~ 61 (96)
T 1wx8_A 15 SRIIRVSVKT--P-QDCH------EFFLAENSNVRRFKKQISKYLHCNADRLVLIF 61 (96)
T ss_dssp SCEEEEEEEC--S-SSEE------EEEEETTCCHHHHHHHHHHHTCSCTTTBCCEE
T ss_pred CCcEEEEEEE--C-CeEE------EEEECCCCCHHHHHHHHHHHhCCCHHHEEEEE
Confidence 3445555544 3 4443 47889999999999999999999988877664
No 105
>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=49.27 E-value=20 Score=29.12 Aligned_cols=49 Identities=12% Similarity=0.167 Sum_probs=37.2
Q ss_pred cccCceeeEEEEeecCCCCCCCCCCCceeccCCccHHHHHHHHHhhccCCcccEEEE
Q 018247 244 EKDDQLDMHLVLVSLDEQRIPGLQQPYLCCRPTLSVRHLCQYVAHQTALQASEIEIY 300 (359)
Q Consensus 244 e~d~e~di~l~Lvs~d~q~iP~L~~PYL~CrPTlsVkhLcqyvA~q~sl~~eEvEi~ 300 (359)
.....+.|.+ -.+.++.+. |.|.|+-||..|.+-||.+.+++++.+=|.
T Consensus 24 ~~~~mm~I~V--Ktl~Gk~i~------lev~p~dTV~~lK~~Ia~k~Gip~~qQrLi 72 (100)
T 1uh6_A 24 GAATMIEVVC--NDRLGKKVR------VKCNTDDTIGDLKKLIAAQTGTRWNKIVLK 72 (100)
T ss_dssp SCCCEEEEEE--ECSSSSCEE------EEEETTSBHHHHHHHHHHHHCCCGGGCEEE
T ss_pred CCCCeEEEEE--ECCCCCEEE------EEeCCCCcHHHHHHHHHHHhCCCHHHEEEE
Confidence 3444445554 455566555 899999999999999999999998887654
No 106
>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A
Probab=48.56 E-value=33 Score=25.13 Aligned_cols=45 Identities=16% Similarity=0.277 Sum_probs=34.4
Q ss_pred eEEEEeecCCCCCCCCCCCceeccCCccHHHHHHHHHhh---ccCCcccEEEEE
Q 018247 251 MHLVLVSLDEQRIPGLQQPYLCCRPTLSVRHLCQYVAHQ---TALQASEIEIYL 301 (359)
Q Consensus 251 i~l~Lvs~d~q~iP~L~~PYL~CrPTlsVkhLcqyvA~q---~sl~~eEvEi~v 301 (359)
+.|.+-.++++.+ .+.+.|+.||..|++.|+.+ ++++++..-|+.
T Consensus 6 m~i~vk~~~g~~~------~~~v~~~~TV~~lK~~i~~~~~~~gip~~~qrLi~ 53 (85)
T 2wyq_A 6 VTITLKTLQQQTF------KIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIY 53 (85)
T ss_dssp EEEEEEETTSCEE------EEEECTTSBHHHHHHHHHHHHCTTTCCGGGEEEEE
T ss_pred EEEEEEECCCCEE------EEEECCCCCHHHHHHHHHhhccccCCCHHHeEEEE
Confidence 3444445565544 47889999999999999998 788898888765
No 107
>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=45.29 E-value=39 Score=25.10 Aligned_cols=32 Identities=6% Similarity=0.051 Sum_probs=28.6
Q ss_pred ce-eccCCccHHHHHHHHHhhccCCcccEEEEE
Q 018247 270 YL-CCRPTLSVRHLCQYVAHQTALQASEIEIYL 301 (359)
Q Consensus 270 YL-~CrPTlsVkhLcqyvA~q~sl~~eEvEi~v 301 (359)
.| .+.|+.||..|++.|+.+++++++..-|+.
T Consensus 22 ~l~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~ 54 (89)
T 1wy8_A 22 TIEDVSRKATIEELRERVWALFDVRPECQRLFY 54 (89)
T ss_dssp EEEEECTTCBHHHHHHHHHHHSCCCTTTEEEEE
T ss_pred EEEecCCCCCHHHHHHHHHHHHCcChhhEEEEE
Confidence 36 488999999999999999999999988875
No 108
>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=43.66 E-value=44 Score=24.11 Aligned_cols=31 Identities=6% Similarity=0.060 Sum_probs=28.5
Q ss_pred ee-ccCCccHHHHHHHHHhhccCCcccEEEEE
Q 018247 271 LC-CRPTLSVRHLCQYVAHQTALQASEIEIYL 301 (359)
Q Consensus 271 L~-CrPTlsVkhLcqyvA~q~sl~~eEvEi~v 301 (359)
|. +.|+.||..|++-|+.+++++++..-|+.
T Consensus 18 l~~v~~~~tv~~lK~~i~~~~gip~~~qrL~~ 49 (78)
T 2faz_A 18 VDSLSRLTKVEELRRKIQELFHVEPGLQRLFY 49 (78)
T ss_dssp EEEECTTCBHHHHHHHHHHHHCCCGGGEEEEE
T ss_pred EeccCCCCCHHHHHHHHHHHHCcChhhEEEEE
Confidence 76 88999999999999999999999988875
No 109
>3l0w_B Monoubiquitinated proliferating cell nuclear antigen, proliferating cell nuclear antigen; replication, DNA damage, DNA repair; 2.80A {Saccharomyces cerevisiae} PDB: 3l10_B
Probab=42.88 E-value=34 Score=29.56 Aligned_cols=42 Identities=7% Similarity=0.178 Sum_probs=33.8
Q ss_pred eecCCCCCCCCCCCceeccCCccHHHHHHHHHhhccCCcccEEEEEEe
Q 018247 256 VSLDEQRIPGLQQPYLCCRPTLSVRHLCQYVAHQTALQASEIEIYLVK 303 (359)
Q Consensus 256 vs~d~q~iP~L~~PYL~CrPTlsVkhLcqyvA~q~sl~~eEvEi~v~k 303 (359)
-.++++.++ |.+.|+-||.+|.+-|+.+++.+++..-|+...
T Consensus 6 k~~~Gk~~~------l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~G 47 (169)
T 3l0w_B 6 KTLTGKTIT------LEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAG 47 (169)
T ss_dssp EETTSCEEE------EECCTTCBHHHHHHHHHHHHCCCTTTEEEEETT
T ss_pred EeCCCCEEE------EEeCCCCCHHHHHHHHHHHHCcCHHHEEEEECC
Confidence 345555542 788899999999999999999999998877643
No 110
>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A
Probab=42.16 E-value=38 Score=27.04 Aligned_cols=31 Identities=13% Similarity=0.063 Sum_probs=28.8
Q ss_pred eeccCCccHHHHHHHHHhhccCCcccEEEEE
Q 018247 271 LCCRPTLSVRHLCQYVAHQTALQASEIEIYL 301 (359)
Q Consensus 271 L~CrPTlsVkhLcqyvA~q~sl~~eEvEi~v 301 (359)
|.+.|+.||..|++.|+.+++++++..-|+.
T Consensus 50 l~v~~~~TV~~LK~~I~~~~gip~~~QrL~~ 80 (115)
T 1we7_A 50 FTLPLTDQVSVIKVKIHEATGMPAGKQKLQY 80 (115)
T ss_dssp EEECSCSBTHHHHHHHHHHSSCCTTTEEEEE
T ss_pred EEECCCCCHHHHHHHHHHHHCCChHHEEEEE
Confidence 7888999999999999999999999988876
No 111
>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=41.55 E-value=33 Score=28.18 Aligned_cols=47 Identities=6% Similarity=0.128 Sum_probs=36.0
Q ss_pred cCceeeEEEEeecCCCCCCCCCCCceeccCCccHHHHHHHHHhhccCCcccEEEEE
Q 018247 246 DDQLDMHLVLVSLDEQRIPGLQQPYLCCRPTLSVRHLCQYVAHQTALQASEIEIYL 301 (359)
Q Consensus 246 d~e~di~l~Lvs~d~q~iP~L~~PYL~CrPTlsVkhLcqyvA~q~sl~~eEvEi~v 301 (359)
+..+.|.+.. + ++.+ .|.+.|+.||..|++.|+.+++++++..-|+.
T Consensus 30 ~~~m~I~Vk~--~-g~~~------~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~ 76 (125)
T 1j8c_A 30 PKIIKVTVKT--P-KEKE------EFAVPENSSVQQFKEAISKRFKSQTDQLVLIF 76 (125)
T ss_dssp CCCEEEEEEC--S-SCEE------EEEECTTCCHHHHHHHHHHHHCSCSSSEEEEE
T ss_pred CCcEEEEEEe--C-CeEE------EEEECCCCcHHHHHHHHHHHHCcCcceEEEEE
Confidence 3455565554 3 4332 47888999999999999999999999888875
No 112
>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A
Probab=46.80 E-value=5.8 Score=28.79 Aligned_cols=32 Identities=19% Similarity=0.252 Sum_probs=27.6
Q ss_pred ceeccCCccHHHHHHHHHhhccCCcccEEEEE
Q 018247 270 YLCCRPTLSVRHLCQYVAHQTALQASEIEIYL 301 (359)
Q Consensus 270 YL~CrPTlsVkhLcqyvA~q~sl~~eEvEi~v 301 (359)
.+.+.|+.||..|++.|+.+++.+++..-|+.
T Consensus 14 ~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~~ 45 (76)
T 3b1l_X 14 PVEVDSDTSILQLKEVVAKQQGVPADQLRVIF 45 (76)
Confidence 36788999999999999999999888877654
No 113
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=40.55 E-value=9.2 Score=37.96 Aligned_cols=47 Identities=19% Similarity=0.369 Sum_probs=31.7
Q ss_pred CCCccccHHH--HHHHHh-cCCCCcccccccccCCCCCCCChHHHHHHHHH
Q 018247 2 ECLHRFCREC--IDKAMR-LGNNECPACRTHCASRRSLRDDLNYDALIAAL 49 (359)
Q Consensus 2 ~CGHtFCR~C--I~k~~~-~~~~~CPvCR~~~~~~~~LRpn~~L~~Liekl 49 (359)
.|-|.-|.+- +..... ...-.||+|...+. ...|+.|..+.+++..+
T Consensus 267 ~C~HlQCFDl~sfL~~~~~~~~W~CPIC~k~~~-~~dL~ID~~~~~IL~~~ 316 (371)
T 3i2d_A 267 NCKHLQCFDALWFLHSQLQIPTWQCPVCQIDIA-LENLAISEFVDDILQNC 316 (371)
T ss_dssp TCCSSCCEEHHHHHHHHHHSCCCBCTTTCCBCC-GGGEEEBHHHHHHHTTS
T ss_pred cCCCcceECHHHHHHHhhcCCceeCCCCCcccC-HHHeeEcHHHHHHHHhc
Confidence 5889855543 222222 24567999999874 45799999888877654
No 114
>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=40.12 E-value=35 Score=26.84 Aligned_cols=45 Identities=7% Similarity=0.197 Sum_probs=35.0
Q ss_pred eeEEEEeecCCCCCCCCCCCceeccCCccHHHHHHHHHhhccCCcccEEEEE
Q 018247 250 DMHLVLVSLDEQRIPGLQQPYLCCRPTLSVRHLCQYVAHQTALQASEIEIYL 301 (359)
Q Consensus 250 di~l~Lvs~d~q~iP~L~~PYL~CrPTlsVkhLcqyvA~q~sl~~eEvEi~v 301 (359)
.|.|.+-+ .++.+ .+.+.|+.||..|++.|+.+++++++..-|+.
T Consensus 28 ~i~I~Vk~-~g~~~------~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~ 72 (101)
T 3m63_B 28 SLNIHIKS-GQDKW------EVNVAPESTVLQFKEAINKANGIPVANQRLIY 72 (101)
T ss_dssp -CCEEEEC-SSCCC------CBCCCTTSBHHHHHHHHHHHHSCCSTTCCEEE
T ss_pred EEEEEEEE-CCEEE------EEEeCCCCCHHHHHHHHHHHHCcChHHEEEEE
Confidence 35555555 66655 37889999999999999999999998877665
No 115
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=40.08 E-value=13 Score=27.72 Aligned_cols=24 Identities=29% Similarity=0.808 Sum_probs=13.0
Q ss_pred CCCccccHHHHHHHHhcCCCCcccc
Q 018247 2 ECLHRFCRECIDKAMRLGNNECPAC 26 (359)
Q Consensus 2 ~CGHtFCR~CI~k~~~~~~~~CPvC 26 (359)
.|++.||.+|= .++....-.||-|
T Consensus 35 ~C~~~FC~dCD-~fiHe~Lh~CPgC 58 (59)
T 1z60_A 35 VCQNVFCVDCD-VFVHDSLHSCPGC 58 (59)
T ss_dssp TTTCCBCHHHH-HTTTTTSCSSSTT
T ss_pred ccCcCcccchh-HHHHhhccCCcCC
Confidence 47777777772 2222123457766
No 116
>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A
Probab=39.82 E-value=24 Score=28.46 Aligned_cols=47 Identities=13% Similarity=0.126 Sum_probs=34.5
Q ss_pred ccCceeeEEEEeecCCCCCCCCCCCceeccCCccHHHHHHHHHhhccCCcccEEE
Q 018247 245 KDDQLDMHLVLVSLDEQRIPGLQQPYLCCRPTLSVRHLCQYVAHQTALQASEIEI 299 (359)
Q Consensus 245 ~d~e~di~l~Lvs~d~q~iP~L~~PYL~CrPTlsVkhLcqyvA~q~sl~~eEvEi 299 (359)
..-++.|+++. +.++++ -+.|-|+-||..|++-||.|.+++++..=|
T Consensus 18 ~~~mIqI~Vk~--~~Gkk~------~v~v~p~DTI~~LK~~I~~k~Gip~~qQrL 64 (93)
T 3plu_A 18 GSHMIEVVVND--RLGKKV------RVKCLGEDSVGDFKKVLSLQIGTQPNKIVL 64 (93)
T ss_dssp --CEEEEEEEC--TTSCEE------EEEEETTSBHHHHHHHHHHHHTCCGGGEEE
T ss_pred CCceEEEEEEC--CCCCEE------EEEECCcCHHHHHHHHHHHHhCCCHHHEEE
Confidence 34455666654 233333 378999999999999999999999998754
No 117
>2daf_A FLJ35834 protein; hypothetical protein FLJ35834, ubiquitin-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=38.69 E-value=22 Score=29.95 Aligned_cols=31 Identities=13% Similarity=0.136 Sum_probs=27.0
Q ss_pred eeccCCccHHHHHHHHHhhccCCcccEEEEE
Q 018247 271 LCCRPTLSVRHLCQYVAHQTALQASEIEIYL 301 (359)
Q Consensus 271 L~CrPTlsVkhLcqyvA~q~sl~~eEvEi~v 301 (359)
+.+.|+.||+.|.+.||.++..+++.+=|..
T Consensus 31 v~v~~d~TV~dLKe~ls~~~~iP~e~qrLIy 61 (118)
T 2daf_A 31 IPFKVDTILKYLKDHFSHLLGIPHSVLQIRY 61 (118)
T ss_dssp EEECSSSCSHHHHHHHHHHHTCCTTTEEEEE
T ss_pred EEeCCCCcHHHHHHHHHhhhCCChHHEEEEE
Confidence 4589999999999999999999998877543
No 118
>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=38.56 E-value=62 Score=25.18 Aligned_cols=32 Identities=16% Similarity=0.291 Sum_probs=29.0
Q ss_pred eeccCCccHHHHHHHHHhhccCCcccEEEEEE
Q 018247 271 LCCRPTLSVRHLCQYVAHQTALQASEIEIYLV 302 (359)
Q Consensus 271 L~CrPTlsVkhLcqyvA~q~sl~~eEvEi~v~ 302 (359)
+-+.|+.||..|++.|+.+++++++..-|+..
T Consensus 26 i~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~ 57 (102)
T 1v5o_A 26 LQVNPDFELSNFRVLCELESGVPAEEAQIVYM 57 (102)
T ss_dssp EEECTTCBHHHHHHHHHHHTCCCGGGBCEEET
T ss_pred EEcCCCCCHHHHHHHHHHHHCcChHHeEEEEC
Confidence 77889999999999999999999999888753
No 119
>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=38.05 E-value=34 Score=26.89 Aligned_cols=45 Identities=16% Similarity=0.186 Sum_probs=35.6
Q ss_pred eEEEEeecCCCCCCCCCCCceeccCCccHHHHHHHHHhhccCCcccEEEEE
Q 018247 251 MHLVLVSLDEQRIPGLQQPYLCCRPTLSVRHLCQYVAHQTALQASEIEIYL 301 (359)
Q Consensus 251 i~l~Lvs~d~q~iP~L~~PYL~CrPTlsVkhLcqyvA~q~sl~~eEvEi~v 301 (359)
+.|.+-.++++.+ .|.+.|+.||..|++.|+.+++++++..-|+.
T Consensus 24 m~I~Vk~~~g~~~------~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~ 68 (106)
T 1ttn_A 24 CQLRLRLSTGKDL------KLVVRSTDTVFHMKRRLHAAEGVEPGSQRWFF 68 (106)
T ss_dssp EEEEEEETTTEEE------EEEECTTSHHHHHHHHHHHTTCCCSTTCEEEE
T ss_pred EEEEEEcCCCCEE------EEEeCCCCcHHHHHHHHHHHHCcCcccEEEEE
Confidence 4444445566554 38899999999999999999999999887775
No 120
>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=36.26 E-value=40 Score=26.63 Aligned_cols=31 Identities=13% Similarity=0.160 Sum_probs=28.8
Q ss_pred eeccC-CccHHHHHHHHHhhccCCcccEEEEE
Q 018247 271 LCCRP-TLSVRHLCQYVAHQTALQASEIEIYL 301 (359)
Q Consensus 271 L~CrP-TlsVkhLcqyvA~q~sl~~eEvEi~v 301 (359)
+.+.| +.||..|.+.|+.+++++++..-|+.
T Consensus 45 l~v~~l~~TV~~LK~~I~~~~gip~~~QrL~~ 76 (111)
T 1we6_A 45 ITVQSLSENVGSLKEKIAGEIQIPANKQKLSG 76 (111)
T ss_dssp EEESCSSSBHHHHHHHHHHHTTCCTTTSEEEC
T ss_pred EEecCCCCcHHHHHHHHHHHHCCCHHHeEEEE
Confidence 78898 99999999999999999999988876
No 121
>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=35.77 E-value=35 Score=26.69 Aligned_cols=46 Identities=4% Similarity=0.141 Sum_probs=35.8
Q ss_pred CceeeEEEEeecCCCCCCCCCCCceeccCCccHHHHHHHHHhhccCCcccEEEEE
Q 018247 247 DQLDMHLVLVSLDEQRIPGLQQPYLCCRPTLSVRHLCQYVAHQTALQASEIEIYL 301 (359)
Q Consensus 247 ~e~di~l~Lvs~d~q~iP~L~~PYL~CrPTlsVkhLcqyvA~q~sl~~eEvEi~v 301 (359)
..+.|.+... ++. -.|.+.|+.||..|++.|+.+++++++..-|+.
T Consensus 24 ~~m~I~Vk~~---g~~------~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~ 69 (101)
T 2klc_A 24 KIMKVTVKTP---KEK------EEFAVPENSSVQQFKEEISKRFKSHTDQLVLIF 69 (101)
T ss_dssp CCEEEEEECS---SCE------EEEEECSCCCHHHHHHHHHHHHTCCGGGEEEEE
T ss_pred CeEEEEEEeC---CcE------EEEEECCCCCHHHHHHHHHHHHCcChhhEEEEE
Confidence 4556665543 332 247889999999999999999999999988865
No 122
>4a20_A Ubiquitin-like protein MDY2; protein binding, GET-pathway, tail-anchored proteins; 1.78A {Saccharomyces cerevisiae} PDB: 2lxc_A 4goc_A
Probab=35.52 E-value=32 Score=27.32 Aligned_cols=48 Identities=21% Similarity=0.298 Sum_probs=34.2
Q ss_pred eeEEEEeecCCCCCCCCCCCceeccCCccHHHHHHHH-HhhccCCcccEEEEE
Q 018247 250 DMHLVLVSLDEQRIPGLQQPYLCCRPTLSVRHLCQYV-AHQTALQASEIEIYL 301 (359)
Q Consensus 250 di~l~Lvs~d~q~iP~L~~PYL~CrPTlsVkhLcqyv-A~q~sl~~eEvEi~v 301 (359)
.|.|.+-.+.++.++ =-|-|.|+-||..|.+.| +.+.+.+++..-|+.
T Consensus 19 ~m~I~VKtl~g~~~~----i~v~v~~~~TV~~lK~~I~~~~~gip~~~QrLi~ 67 (98)
T 4a20_A 19 AVHLTLKKIQAPKFS----IEHDFSPSDTILQIKQHLISEEKASHISEIKLLL 67 (98)
T ss_dssp CEEEEEEECSSSCEE----EEEEECTTCBHHHHHHHHHHTTSCSCGGGEEEEE
T ss_pred CEEEEEEcCCCCEEE----EEEecCCCChHHHHHHHHHHHhcCCChhhEEEEE
Confidence 355555556655221 114678999999999999 878888999887765
No 123
>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=35.36 E-value=62 Score=24.74 Aligned_cols=32 Identities=13% Similarity=0.200 Sum_probs=28.2
Q ss_pred ceeccCCccHHHHHHHHHhh---ccCCcccEEEEE
Q 018247 270 YLCCRPTLSVRHLCQYVAHQ---TALQASEIEIYL 301 (359)
Q Consensus 270 YL~CrPTlsVkhLcqyvA~q---~sl~~eEvEi~v 301 (359)
.+.+.|+.||..|++.|+.+ ++++++..-|+.
T Consensus 14 ~~~v~~~~TV~~LK~~I~~~~~~~gip~~~qrLi~ 48 (95)
T 1uel_A 14 KIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIY 48 (95)
T ss_dssp EEECCTTSBHHHHHHHHHHHHCTTTCCTTTEEEEE
T ss_pred EEEECCCCHHHHHHHHHHhhcccCCCChhhEEEEE
Confidence 47788999999999999998 778999888875
No 124
>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=34.10 E-value=36 Score=26.67 Aligned_cols=32 Identities=6% Similarity=0.197 Sum_probs=29.2
Q ss_pred ceeccCCccHHHHHHHHHhhccCCcccEEEEE
Q 018247 270 YLCCRPTLSVRHLCQYVAHQTALQASEIEIYL 301 (359)
Q Consensus 270 YL~CrPTlsVkhLcqyvA~q~sl~~eEvEi~v 301 (359)
.|.+.|+.||..|++.|+.+++++++..-|+.
T Consensus 30 ~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~ 61 (106)
T 1wx7_A 30 DFSVTDTCTIQQLKEEISQRFKAHPDQLVLIF 61 (106)
T ss_dssp EEEEETTCCHHHHHHHHHHHHTCCTTTEEEEE
T ss_pred EEEECCCCcHHHHHHHHHHHHCcChhhEEEEE
Confidence 47889999999999999999999999988865
No 125
>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana}
Probab=33.91 E-value=37 Score=25.64 Aligned_cols=31 Identities=16% Similarity=0.232 Sum_probs=28.2
Q ss_pred eeccCCccHHHHHHHHHhhccCCcccEEEEE
Q 018247 271 LCCRPTLSVRHLCQYVAHQTALQASEIEIYL 301 (359)
Q Consensus 271 L~CrPTlsVkhLcqyvA~q~sl~~eEvEi~v 301 (359)
+.+.|+.||..|++.|+.+++++++..-|+.
T Consensus 26 l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~ 56 (85)
T 2kd0_A 26 LSVSPDCTVKDLKSQLQPITNVLPRGQKLIF 56 (85)
T ss_dssp EEECTTSBHHHHHHHHHHHHCCCTTTCEEEE
T ss_pred EEECCCCcHHHHHHHHHHHHCcChHHEEEEE
Confidence 6788999999999999999999999988874
No 126
>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=33.74 E-value=44 Score=25.84 Aligned_cols=31 Identities=13% Similarity=0.142 Sum_probs=28.5
Q ss_pred eeccCCccHHHHHHHHHhhccCCcccEEEEE
Q 018247 271 LCCRPTLSVRHLCQYVAHQTALQASEIEIYL 301 (359)
Q Consensus 271 L~CrPTlsVkhLcqyvA~q~sl~~eEvEi~v 301 (359)
+.+.|+.||..|++.|+.+++++++..-|+.
T Consensus 29 l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~ 59 (94)
T 2kan_A 29 VEVDRTETVSSLKDKIHIVENTPIKRMQLYY 59 (94)
T ss_dssp EEECTTCBHHHHHHHHHHHSSSCTTTEEEEE
T ss_pred EEECCCCcHHHHHHHHHHHHCcCHHHEEEEE
Confidence 7888999999999999999999999988865
No 127
>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=33.71 E-value=39 Score=26.68 Aligned_cols=33 Identities=15% Similarity=0.161 Sum_probs=29.0
Q ss_pred ceeccCCccHHHHHHHHHhhccCCcccEEEEEE
Q 018247 270 YLCCRPTLSVRHLCQYVAHQTALQASEIEIYLV 302 (359)
Q Consensus 270 YL~CrPTlsVkhLcqyvA~q~sl~~eEvEi~v~ 302 (359)
.|.+.|+.||..|++.|+.+++++++..-|+..
T Consensus 15 ~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~ 47 (106)
T 3m62_B 15 PLDLEPSNTILETKTKLAQSISCEESQIKLIYS 47 (106)
T ss_dssp EECCCTTSBHHHHHHHHHHTTTSCGGGCEEEET
T ss_pred EEEECCCCcHHHHHHHHHHHHCCChhhEEEEEC
Confidence 367889999999999999999999999877653
No 128
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=33.66 E-value=8.4 Score=29.63 Aligned_cols=14 Identities=43% Similarity=0.997 Sum_probs=11.8
Q ss_pred CCCccccHHHHHHH
Q 018247 2 ECLHRFCRECIDKA 15 (359)
Q Consensus 2 ~CGHtFCR~CI~k~ 15 (359)
.|||.||..|-..|
T Consensus 55 ~C~~~FC~~C~~~w 68 (80)
T 2jmo_A 55 GCGFAFCRECKEAY 68 (80)
T ss_dssp CCSCCEETTTTEEC
T ss_pred CCCCeeccccCccc
Confidence 59999999997654
No 129
>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p
Probab=33.61 E-value=8.8 Score=31.51 Aligned_cols=32 Identities=3% Similarity=0.157 Sum_probs=0.0
Q ss_pred eeccCCccHHHHHHHHHhhccCCcccEEEEEE
Q 018247 271 LCCRPTLSVRHLCQYVAHQTALQASEIEIYLV 302 (359)
Q Consensus 271 L~CrPTlsVkhLcqyvA~q~sl~~eEvEi~v~ 302 (359)
|.+.|+.||.+|.+-|+.+++++++..-|+..
T Consensus 15 l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~ 46 (128)
T 3u5e_m 15 LEVESSDTIDNVKSKIQDKEGIPPDQQRLIFA 46 (128)
T ss_dssp --------------------------------
T ss_pred EEeCCCCCHHHHHHHHHHHhCcChHHEEEEEC
Confidence 56779999999999999999999888766653
No 130
>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=31.33 E-value=44 Score=25.60 Aligned_cols=48 Identities=8% Similarity=0.076 Sum_probs=34.0
Q ss_pred cccCceeeEEEEeecCCCCCCCCCCCceeccCCccHHHHHHHHHhhccCCcccEEEEE
Q 018247 244 EKDDQLDMHLVLVSLDEQRIPGLQQPYLCCRPTLSVRHLCQYVAHQTALQASEIEIYL 301 (359)
Q Consensus 244 e~d~e~di~l~Lvs~d~q~iP~L~~PYL~CrPTlsVkhLcqyvA~q~sl~~eEvEi~v 301 (359)
.....+.|.+.- ++.+ .+.+.|+.||..|++.|+.+++++++..-|+.
T Consensus 15 ~~~~~m~I~Vk~----g~~~------~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~ 62 (93)
T 2l7r_A 15 VPRGSMQLFVRA----QELH------TFEVTGQETVAQIKAHVASLEGIAPEDQVVLL 62 (93)
T ss_dssp -----CEEEEES----SSEE------EEECCSSCBHHHHHHHHHHHHTCCGGGCEEEE
T ss_pred CCCCcEEEEEEC----CCEE------EEEeCCCCcHHHHHHHHHHHhCcChhHEEEEE
Confidence 344455666543 3332 47888999999999999999999999888775
No 131
>1js8_A Hemocyanin; glycoprotein, mollusc, oxygen-transport, thioether bond, OXY storage-transport complex; HET: NDG NAG BMA MAN; 2.30A {Octopus dofleini} SCOP: a.86.1.1 b.112.1.1
Probab=31.32 E-value=31 Score=33.78 Aligned_cols=43 Identities=16% Similarity=0.323 Sum_probs=35.1
Q ss_pred hhHHHHHHhhhhhcccCceeeEEEEeecCCCCCC--CCCCCceeccC
Q 018247 231 RLSKLVDYLQSLEEKDDQLDMHLVLVSLDEQRIP--GLQQPYLCCRP 275 (359)
Q Consensus 231 r~~klvd~L~~~~e~d~e~di~l~Lvs~d~q~iP--~L~~PYL~CrP 275 (359)
=|+++++-|... .++.+.|.|+|||.++..|| .|+.|-+-=.|
T Consensus 345 ~It~~l~~l~~~--~d~~~~v~V~iv~~~g~~~~~~~~~~~~i~~~p 389 (394)
T 1js8_A 345 DITTSLKHLRLD--AHDDFDIKVTIKGIDGHVLSNKYLSPPTVFLAP 389 (394)
T ss_dssp ECHHHHHHTTCC--TTSCEEEEEEEEESSSCEECGGGSCCCEEEEEC
T ss_pred cchHHHHHcCCC--cCCceeEEEEEEecCCCCCcccccCCCeEEEec
Confidence 378899999764 44788999999999999999 68888776555
No 132
>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1
Probab=30.03 E-value=50 Score=25.52 Aligned_cols=30 Identities=13% Similarity=0.030 Sum_probs=27.1
Q ss_pred eeccCCccHHHHHHHHHhhccCCcccEEEE
Q 018247 271 LCCRPTLSVRHLCQYVAHQTALQASEIEIY 300 (359)
Q Consensus 271 L~CrPTlsVkhLcqyvA~q~sl~~eEvEi~ 300 (359)
+.+.|+.||..|++.|+..++++++..-|+
T Consensus 31 i~v~~~~TV~~LK~~I~~~tgip~~~QrL~ 60 (95)
T 1v86_A 31 VKVPLDSTGSELKQKIHSITGLPPAMQKVM 60 (95)
T ss_dssp EEECTTSBHHHHHHHHHHHHCSCSTTCCCB
T ss_pred EEECCCCcHHHHHHHHHHHHCcCHHHeEEE
Confidence 788899999999999999999998877666
No 133
>3ai5_A Yeast enhanced green fluorescent protein, ubiquit; ubiquitin, fusion protein, fluore protein, transcription; HET: CR2; 1.40A {Aequorea victoria} PDB: 3ako_B*
Probab=29.99 E-value=60 Score=31.13 Aligned_cols=32 Identities=6% Similarity=0.214 Sum_probs=28.8
Q ss_pred ceeccCCccHHHHHHHHHhhccCCcccEEEEE
Q 018247 270 YLCCRPTLSVRHLCQYVAHQTALQASEIEIYL 301 (359)
Q Consensus 270 YL~CrPTlsVkhLcqyvA~q~sl~~eEvEi~v 301 (359)
.|.+.|+.||..|++-|+.+++++++..-|+.
T Consensus 247 ~leV~~s~TV~dLK~kI~~~~GIp~~~QRLi~ 278 (307)
T 3ai5_A 247 TLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF 278 (307)
T ss_dssp EEEECTTCBHHHHHHHHHHHHCCCGGGCEEEE
T ss_pred EEEECCCCcHHHHHHHHHHHHCcChHHEEEEe
Confidence 47889999999999999999999999887765
No 134
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=29.81 E-value=11 Score=31.31 Aligned_cols=24 Identities=21% Similarity=0.577 Sum_probs=15.4
Q ss_pred CCCccccHHHHHHHHhcCCCCccccccccc
Q 018247 2 ECLHRFCRECIDKAMRLGNNECPACRTHCA 31 (359)
Q Consensus 2 ~CGHtFCR~CI~k~~~~~~~~CPvCR~~~~ 31 (359)
.||++|+. .+. ....||.|+..-.
T Consensus 72 ~CG~~F~~-----~~~-kPsrCP~CkSe~I 95 (105)
T 2gmg_A 72 KCGFVFKA-----EIN-IPSRCPKCKSEWI 95 (105)
T ss_dssp TTCCBCCC-----CSS-CCSSCSSSCCCCB
T ss_pred hCcCeecc-----cCC-CCCCCcCCCCCcc
Confidence 58999921 111 2467999998643
No 135
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=29.80 E-value=39 Score=29.10 Aligned_cols=27 Identities=26% Similarity=0.691 Sum_probs=20.2
Q ss_pred CCCccccHHHHHHHHh----------cCCCCcccccc
Q 018247 2 ECLHRFCRECIDKAMR----------LGNNECPACRT 28 (359)
Q Consensus 2 ~CGHtFCR~CI~k~~~----------~~~~~CPvCR~ 28 (359)
.|-..||..||...+. .+.-.||.|..
T Consensus 80 ~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~ 116 (142)
T 2lbm_A 80 FCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHP 116 (142)
T ss_dssp SSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCC
T ss_pred CCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccC
Confidence 4788999999996442 24557999974
No 136
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=29.79 E-value=28 Score=34.37 Aligned_cols=47 Identities=21% Similarity=0.306 Sum_probs=31.6
Q ss_pred CCCccccHHH--HHHHHh-cCCCCcccccccccCCCCCCCChHHHHHHHHH
Q 018247 2 ECLHRFCREC--IDKAMR-LGNNECPACRTHCASRRSLRDDLNYDALIAAL 49 (359)
Q Consensus 2 ~CGHtFCR~C--I~k~~~-~~~~~CPvCR~~~~~~~~LRpn~~L~~Liekl 49 (359)
.|.|.-|.+- +..... ...-.||+|...+. ...|+.|..+.+++..+
T Consensus 233 ~C~HlqCFDl~sfL~~~~~~~~W~CPiC~k~~~-~~dL~ID~~~~~IL~~~ 282 (360)
T 4fo9_A 233 TCTHLQCFDAALYLQMNEKKPTWICPVCDKKAA-YESLILDGLFMEILNDC 282 (360)
T ss_dssp TCCCCCCEEHHHHHHHHHHSCCCBCTTTCSBCC-GGGEEEBHHHHHHHTTC
T ss_pred CCCCCccCCHHHHHHHHhhCCCeECCCCCcccC-HHHeEEcHHHHHHHHhC
Confidence 5888855542 222222 13457999999874 45799999998887654
No 137
>1wjn_A Tubulin-folding protein TBCE; ubiquitin-like domain, progressive motor neuropathy, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=29.71 E-value=43 Score=25.82 Aligned_cols=33 Identities=9% Similarity=0.111 Sum_probs=29.2
Q ss_pred eccCCccHHHHHHHHHhhccCCcccEEEEEEec
Q 018247 272 CCRPTLSVRHLCQYVAHQTALQASEIEIYLVKE 304 (359)
Q Consensus 272 ~CrPTlsVkhLcqyvA~q~sl~~eEvEi~v~k~ 304 (359)
.-.+++||..|++-|+..++.++...-|++..+
T Consensus 28 ~l~~~~TV~~LK~~i~~~~gip~~~q~L~~~~~ 60 (97)
T 1wjn_A 28 QLPDSMTVQKVKGLLSRLLKVPVSELLLSYESS 60 (97)
T ss_dssp EEETTSBHHHHHHHHHTTTTCCTTTCEEEEECT
T ss_pred ECCCCCCHHHHHHHHHHHHCCChhHeEEEEEcC
Confidence 345899999999999999999999999998753
No 138
>1n91_A ORF, hypothetical protein; alpha+beta, northeast structural genomics consortium, PSI, P structure initiative, NESG; NMR {Escherichia coli} SCOP: d.206.1.1 PDB: 1yh5_A
Probab=29.66 E-value=31 Score=28.47 Aligned_cols=21 Identities=24% Similarity=0.426 Sum_probs=19.4
Q ss_pred HHHHHHHHhhccCCcccEEEE
Q 018247 280 RHLCQYVAHQTALQASEIEIY 300 (359)
Q Consensus 280 khLcqyvA~q~sl~~eEvEi~ 300 (359)
++|++|||.+++++...|+|.
T Consensus 53 ~ali~~LAk~l~V~ks~V~Iv 73 (108)
T 1n91_A 53 SHLVKFLGKQFRVAKSQVVIE 73 (108)
T ss_dssp HHHHHHHHHHTCCCTTTEEES
T ss_pred HHHHHHHHHHhCCccceEEEE
Confidence 799999999999999999874
No 139
>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=29.14 E-value=50 Score=25.82 Aligned_cols=49 Identities=4% Similarity=0.152 Sum_probs=37.1
Q ss_pred cccCceeeEEEEeecCCCCCCCCCCCceeccCCccHHHHHHHHHhhccCCcccEEEEE
Q 018247 244 EKDDQLDMHLVLVSLDEQRIPGLQQPYLCCRPTLSVRHLCQYVAHQTALQASEIEIYL 301 (359)
Q Consensus 244 e~d~e~di~l~Lvs~d~q~iP~L~~PYL~CrPTlsVkhLcqyvA~q~sl~~eEvEi~v 301 (359)
..+..+.|.+. .++++ + .|.+.|+.||..|++.|+.+++++++..-|+.
T Consensus 18 ~~~~~m~I~Vk--~~~g~-~------~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~ 66 (100)
T 1yqb_A 18 GSPHLIKVTVK--TPKDK-E------DFSVTDTCTIQQLKEEISQRFKAHPDQLVLIF 66 (100)
T ss_dssp CCTTEEEEEEE--CSSCE-E------EEEEETTCBHHHHHHHHHHHHTCCGGGEEEEE
T ss_pred CCCCeEEEEEE--cCCCc-E------EEEECCCCcHHHHHHHHHHHHCcChhhEEEEE
Confidence 44555555554 44442 1 47889999999999999999999999988875
No 140
>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana}
Probab=28.23 E-value=60 Score=24.51 Aligned_cols=31 Identities=10% Similarity=0.037 Sum_probs=28.4
Q ss_pred eeccCCccHHHHHHHHHhhccCCcccEEEEE
Q 018247 271 LCCRPTLSVRHLCQYVAHQTALQASEIEIYL 301 (359)
Q Consensus 271 L~CrPTlsVkhLcqyvA~q~sl~~eEvEi~v 301 (359)
|.+.|+.||..|++-|+.+++.+++..-|+.
T Consensus 25 l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~ 55 (84)
T 2kk8_A 25 LEVDYRDTLLVVKQKIERSQHIPVSKQTLIV 55 (84)
T ss_dssp EEECTTSBHHHHHHHHHHHHTCCGGGEEEEE
T ss_pred EEECCCChHHHHHHHHHHHHCcChHHEEEEE
Confidence 6788999999999999999999999988875
No 141
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=27.69 E-value=87 Score=25.11 Aligned_cols=33 Identities=6% Similarity=0.209 Sum_probs=29.4
Q ss_pred ceeccCCccHHHHHHHHHhhccCCcccEEEEEE
Q 018247 270 YLCCRPTLSVRHLCQYVAHQTALQASEIEIYLV 302 (359)
Q Consensus 270 YL~CrPTlsVkhLcqyvA~q~sl~~eEvEi~v~ 302 (359)
.+.+.|+.||..|++-|+.+++.+++..-|+..
T Consensus 14 ~~~v~~~~tv~~lK~~i~~~~gip~~~q~L~~~ 46 (152)
T 3b08_A 14 TLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFA 46 (152)
T ss_dssp EEECCTTCBHHHHHHHHHHHHCCCGGGEEEEET
T ss_pred EEEECCCCCHHHHHHHHHHHHCcChHHeEEEEC
Confidence 467889999999999999999999999888764
No 142
>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f
Probab=27.37 E-value=13 Score=32.02 Aligned_cols=32 Identities=3% Similarity=0.157 Sum_probs=0.0
Q ss_pred eeccCCccHHHHHHHHHhhccCCcccEEEEEE
Q 018247 271 LCCRPTLSVRHLCQYVAHQTALQASEIEIYLV 302 (359)
Q Consensus 271 L~CrPTlsVkhLcqyvA~q~sl~~eEvEi~v~ 302 (359)
|.+.|+.||..|.+-|+.+++++++..-|+..
T Consensus 15 l~V~~~~TV~~LK~~I~~~~gip~~~QrLi~~ 46 (152)
T 3u5c_f 15 LEVESSDTIDNVKSKIQDKEGIPPDQQRLIFA 46 (152)
T ss_dssp --------------------------------
T ss_pred EEECCCCCHHHHHHHHHHHhCCCHHHEEEEEC
Confidence 56789999999999999999999888766543
No 143
>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae}
Probab=26.74 E-value=63 Score=25.88 Aligned_cols=48 Identities=6% Similarity=0.153 Sum_probs=38.4
Q ss_pred CceeeEEEEeecCCCCCCCCCCCceeccCCccHHHHHHHHHhhccCCcccEEEEEE
Q 018247 247 DQLDMHLVLVSLDEQRIPGLQQPYLCCRPTLSVRHLCQYVAHQTALQASEIEIYLV 302 (359)
Q Consensus 247 ~e~di~l~Lvs~d~q~iP~L~~PYL~CrPTlsVkhLcqyvA~q~sl~~eEvEi~v~ 302 (359)
.||.|.+.. ++++.+ .|.+.|+.||..|++-|+.+++++++..-|+..
T Consensus 8 ~~~~i~vk~--l~G~~~------~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~ 55 (114)
T 2kdi_A 8 GEFQIFAKT--LTGKTI------TLEVESSDTIDNVKSKIQDKEGIPPDQQRLIWA 55 (114)
T ss_dssp CCCEEEEEE--TTCCEE------EEECCTTCBHHHHHHHHHHHHCCCGGGEEEEET
T ss_pred CcEEEEEEe--CCCcEE------EEEECCCCcHHHHHHHHHHHHCcChHHEEEEEC
Confidence 467776655 445444 377889999999999999999999999988764
No 144
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=26.70 E-value=57 Score=25.80 Aligned_cols=12 Identities=25% Similarity=0.872 Sum_probs=9.9
Q ss_pred CCCccccccccc
Q 018247 20 NNECPACRTHCA 31 (359)
Q Consensus 20 ~~~CPvCR~~~~ 31 (359)
...||+|..+++
T Consensus 47 g~~CPvCgs~l~ 58 (112)
T 1l8d_A 47 KGKCPVCGRELT 58 (112)
T ss_dssp SEECTTTCCEEC
T ss_pred CCCCCCCCCcCC
Confidence 457999999885
No 145
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=26.25 E-value=74 Score=26.75 Aligned_cols=52 Identities=8% Similarity=0.268 Sum_probs=38.1
Q ss_pred cccCceeeEEEEeecCCCCCCCCCCCceeccCCccHHHHHHHHHhhccCCcccEEEEEEe
Q 018247 244 EKDDQLDMHLVLVSLDEQRIPGLQQPYLCCRPTLSVRHLCQYVAHQTALQASEIEIYLVK 303 (359)
Q Consensus 244 e~d~e~di~l~Lvs~d~q~iP~L~~PYL~CrPTlsVkhLcqyvA~q~sl~~eEvEi~v~k 303 (359)
+....+.|++. .++++.++ |.+.|+-||..|++.|+.+++.+++..-|+...
T Consensus 16 ~~~~~m~i~Vk--~~~g~~~~------l~v~~~~tV~~lK~~I~~~~gip~~~QrL~~~g 67 (172)
T 3u30_A 16 PRGSHMQIFVK--TLTGKTIT------LEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAG 67 (172)
T ss_dssp ---CCEEEEEE--ETTTEEEE------EEECTTCBHHHHHHHHHHHHCCCGGGEEEEETT
T ss_pred CCCCcEEEEEE--eCCCCEEE------EEECCCCcHHHHHHHHHHHHCcChHHEEEEECC
Confidence 34445555554 46666543 788899999999999999999999998877643
No 146
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=25.50 E-value=87 Score=25.77 Aligned_cols=32 Identities=25% Similarity=0.151 Sum_probs=28.8
Q ss_pred ceeccCCccHHHHHHHHHhhccCCcccEEEEE
Q 018247 270 YLCCRPTLSVRHLCQYVAHQTALQASEIEIYL 301 (359)
Q Consensus 270 YL~CrPTlsVkhLcqyvA~q~sl~~eEvEi~v 301 (359)
.+-+.|+-||..|.+-|+.+.+.+++..-++.
T Consensus 95 ~~~v~~~~tV~~lK~~i~~~~gip~~~q~L~~ 126 (159)
T 3rt3_B 95 TYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTF 126 (159)
T ss_dssp EEEECTTSBHHHHHHHHHHHHTCCGGGEEEEE
T ss_pred EEEeCCCCCHHHHHHHHHHHHCCCHHHEEEEE
Confidence 36889999999999999999999999888765
No 147
>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=25.43 E-value=65 Score=24.39 Aligned_cols=31 Identities=16% Similarity=0.120 Sum_probs=27.3
Q ss_pred eeccCCccHHHHHHHHHhhc--cCCcccEEEEE
Q 018247 271 LCCRPTLSVRHLCQYVAHQT--ALQASEIEIYL 301 (359)
Q Consensus 271 L~CrPTlsVkhLcqyvA~q~--sl~~eEvEi~v 301 (359)
|.|.|+-||..|.+.|+.++ +.+++..-|+.
T Consensus 24 v~v~~~~TV~~lK~~I~~~~~~~i~~~~QrLi~ 56 (93)
T 1wgd_A 24 LSGDRGWSVGHLKAHLSRVYPERPRPEDQRLIY 56 (93)
T ss_dssp EECCTTSCHHHHHHHHHHHSTTCCCTTTCEEEE
T ss_pred EecCCCCcHHHHHHHHHHHhcCCCChHHeEEEE
Confidence 56889999999999999999 88888887764
No 148
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=24.74 E-value=78 Score=26.05 Aligned_cols=42 Identities=14% Similarity=0.218 Sum_probs=34.0
Q ss_pred EEEeecCCCCCCCCCCCceeccCCccHHHHHHHHHhhccCCcccEEEE
Q 018247 253 LVLVSLDEQRIPGLQQPYLCCRPTLSVRHLCQYVAHQTALQASEIEIY 300 (359)
Q Consensus 253 l~Lvs~d~q~iP~L~~PYL~CrPTlsVkhLcqyvA~q~sl~~eEvEi~ 300 (359)
|.+-.++++.++ |.+.|+-||.+|.+-|+.+++.+++..-++
T Consensus 5 i~vk~~~g~~~~------l~v~~~~tV~~lK~~I~~~~gip~~~QrL~ 46 (159)
T 3rt3_B 5 LTVKMLAGNEFQ------VSLSSSMSVSELKAQITQKIGVHAFQQRLA 46 (159)
T ss_dssp EEEEETTSCEEE------EECCTTCCHHHHHHHHHHHHCCCGGGEEEE
T ss_pred EEEEECCCCEEE------EEeCCCCcHHHHHHHHHHHhCCCHHHEEEE
Confidence 333345665553 788899999999999999999999998887
No 149
>4b6w_A Tubulin-specific chaperone; CAP-Gly, ubiquitin-like; HET: MSE; 2.35A {Trypanosoma brucei brucei strain 927}
Probab=23.46 E-value=1e+02 Score=23.64 Aligned_cols=34 Identities=9% Similarity=0.101 Sum_probs=29.5
Q ss_pred eeccCCccHHHHHHHHHhhccCCcccEEEEEEec
Q 018247 271 LCCRPTLSVRHLCQYVAHQTALQASEIEIYLVKE 304 (359)
Q Consensus 271 L~CrPTlsVkhLcqyvA~q~sl~~eEvEi~v~k~ 304 (359)
..--|+.||..|++-|...++.+++.--+.+...
T Consensus 19 ~r~~~s~TI~~lK~ki~~~~Gip~~~QrLi~~~~ 52 (86)
T 4b6w_A 19 KRYGLAQTIESIKENVFTHFATPPEYMQLQLIDD 52 (86)
T ss_dssp EEEETTSBHHHHHHHHHTTSCCCGGGEEEEEECT
T ss_pred EEcCccCcHHHHHHHHHHHHCCCHHHEEEEEecC
Confidence 4456899999999999999999999999887643
No 150
>1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=22.91 E-value=1.2e+02 Score=23.20 Aligned_cols=49 Identities=12% Similarity=0.022 Sum_probs=36.7
Q ss_pred eeEEEEeecCCCCCCCCCCCceeccCCccHHHHHHHHHhhccCCcccEEEEEEe
Q 018247 250 DMHLVLVSLDEQRIPGLQQPYLCCRPTLSVRHLCQYVAHQTALQASEIEIYLVK 303 (359)
Q Consensus 250 di~l~Lvs~d~q~iP~L~~PYL~CrPTlsVkhLcqyvA~q~sl~~eEvEi~v~k 303 (359)
+|.|.+.+-..+ ..-=+.+.|+.||..|++-|+..++++++..-|+...
T Consensus 7 ~v~l~I~~~~~~-----~~~~~~v~~~~TV~~lK~ki~~~~gip~~~qrL~~~~ 55 (95)
T 1v6e_A 7 GVMVFISSSLNS-----FRSEKRYSRSLTIAEFKCKLELVVGSPASCMELELYG 55 (95)
T ss_dssp CEEEEEEETTSS-----SCEEEEECTTSBHHHHHHHHHHHTCSCTTTCBCEEEC
T ss_pred EEEEEEEECCCC-----eeEEEEcCccCHHHHHHHHHHHHHCCCHHHeEEEEeC
Confidence 366666652221 1233678899999999999999999999998888764
No 151
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=21.38 E-value=68 Score=26.99 Aligned_cols=32 Identities=6% Similarity=0.214 Sum_probs=28.5
Q ss_pred ceeccCCccHHHHHHHHHhhccCCcccEEEEE
Q 018247 270 YLCCRPTLSVRHLCQYVAHQTALQASEIEIYL 301 (359)
Q Consensus 270 YL~CrPTlsVkhLcqyvA~q~sl~~eEvEi~v 301 (359)
.|.+.|+.||.+|++-|+.+++++++..-++.
T Consensus 110 ~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~ 141 (172)
T 3u30_A 110 TLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF 141 (172)
T ss_dssp EEEECTTCBHHHHHHHHHHHHCCCGGGCCEEE
T ss_pred eEEecCCCCHHHHHHHHHHHhCCCceeEEEEE
Confidence 46788999999999999999999999887765
No 152
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=20.41 E-value=1.4e+02 Score=23.86 Aligned_cols=32 Identities=6% Similarity=0.214 Sum_probs=28.6
Q ss_pred ceeccCCccHHHHHHHHHhhccCCcccEEEEE
Q 018247 270 YLCCRPTLSVRHLCQYVAHQTALQASEIEIYL 301 (359)
Q Consensus 270 YL~CrPTlsVkhLcqyvA~q~sl~~eEvEi~v 301 (359)
.+.+.|+-||..|++-|+.+++.+++..-++.
T Consensus 90 ~~~v~~~~tv~~lK~~i~~~~gi~~~~qrL~~ 121 (152)
T 3b08_A 90 TLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF 121 (152)
T ss_dssp EEEECTTCBHHHHHHHHHHHHCCCGGGEEEEE
T ss_pred EEEeCCCCcHHHHHHHHHHHhCcChhhEEEEE
Confidence 47788999999999999999999999888765
Done!