BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 018248
(359 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4AV8|A Chain A, Kluyveromyces Lactis Hsv2 Complete Loop 6cd
pdb|4AV9|A Chain A, Kluyveromyces Lactis Hsv2
pdb|4EXV|A Chain A, Structure Of Kluyveromyces Lactis Hsv2p
Length = 339
Score = 102 bits (253), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 83/298 (27%), Positives = 132/298 (44%), Gaps = 41/298 (13%)
Query: 14 LNQDHGCFATGTETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPH 73
NQD C T F +Y P K IM ++ P GT + ML R+N I V++
Sbjct: 22 FNQDQSCLIVSTPKSFDIYNVHPLKRIMSQEM---PDAGT--IRMLHRTNYIAFVST--- 73
Query: 74 QSNKVMIWDDHENRYLGELSFRSEVKNXXXXXXXXXXXXNQKVYVYNFTDLKLVDQIETV 133
+ + IWDD + + + + + VK+ + ++ F + ++I
Sbjct: 74 KKELLHIWDDVKKQDITRVKLDAAVKDLFLSREFIVVSQGDVISIFKFGNPW--NKITED 131
Query: 134 VNPTGLCDVSQNAGPMVMACPGLLKGQVRVEDYGTK------KSKYITAHASRIASIAMT 187
+ G+C+ + G +V + L GQ+ V T K + AHA+ + + +
Sbjct: 132 IKFGGVCEFAN--GLLVYSNEFNL-GQIHVTRLQTDAEQVVGKGVLVKAHANPVKMVRLN 188
Query: 188 LDGRFVATASSKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSNAQWLAASSDKGTV 247
G VAT S GTLIRVF T +G L++E RRG +R I + +S + LA SDK T+
Sbjct: 189 RKGDMVATCSQDGTLIRVFQTDNGVLVREFRRGLDRTSIIDMRWSPDGSKLAVVSDKWTL 248
Query: 248 HVFGLKVDSGSPGTSKLHSASEPNLXXXXXXXXXXFRFIRGVLPKYFSSKWSMAQFRL 305
HVF + D+ +K H + + KYF S+WS+ F+L
Sbjct: 249 HVFEVFNDA----ENKRHVLKD------------------WINIKYFQSEWSICNFKL 284
>pdb|3VU4|A Chain A, Crystal Structure Of Kluyvelomyces Marxianus Hsv2
pdb|3VU4|B Chain B, Crystal Structure Of Kluyvelomyces Marxianus Hsv2
Length = 355
Score = 94.0 bits (232), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 87/321 (27%), Positives = 140/321 (43%), Gaps = 60/321 (18%)
Query: 5 DPITIHHLALNQDHGCFATGTETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNI 64
+P+T + NQD C T F +Y P IM ++ + V ML R+N
Sbjct: 20 NPVTDYEF--NQDQSCLILSTLKSFEIYNVHPVAHIMSQEMRHLSK-----VRMLHRTNY 72
Query: 65 ICLVNSGPHQSNKVMIWDDHENRYLGELSFRSEVKNXXXXXXXXXXXXNQKVYVYNFTD- 123
+ V +G + V IWDD + + + + + VK+ + V+ F +
Sbjct: 73 VAFV-TGVKEV--VHIWDDVKKQDVSRIKVDAPVKDLFLSREFIVVSYGDVISVFKFGNP 129
Query: 124 -LKLVDQIETVVNPTGLCDVSQNAGPMVMACPGLLKGQVRV-----------EDYGTK-- 169
++ D I G+C+ S G +V + L GQ+ + +D G +
Sbjct: 130 WKRITDDIRF----GGVCEFSN--GLLVYSNEFNL-GQIHITKLQSSGSATTQDQGVQQK 182
Query: 170 ----KSKYITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRRGAERAE 225
K I AH + I + + VAT S GT+IRVF T DG L++E RRG +RA+
Sbjct: 183 AILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVREFRRGLDRAD 242
Query: 226 IYSLAFSSNAQWLAASSDKGTVHVFGLKVDSGSPGTSKLHSASEPNLXXXXXXXXXXFRF 285
+ + +S++ LA SDK T+HVF + D +K H+
Sbjct: 243 VVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQD----NKRHA------------------- 279
Query: 286 IRGVLP-KYFSSKWSMAQFRL 305
++G + KYF S+WS+ F+L
Sbjct: 280 LKGWINMKYFQSEWSLCNFKL 300
>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure
pdb|2YMU|B Chain B, Structure Of A Highly Repetitive Propeller Structure
Length = 577
Score = 44.7 bits (104), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 51/84 (60%), Gaps = 4/84 (4%)
Query: 167 GTKKSKYITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRRGAERAEI 226
G K+ + AH+S + +A + DG+ +A+AS T ++++N +G LLQ + + +
Sbjct: 5 GVKERNRLEAHSSSVRGVAFSPDGQTIASASDDKT-VKLWN-RNGQLLQTLT--GHSSSV 60
Query: 227 YSLAFSSNAQWLAASSDKGTVHVF 250
+ +AFS + Q +A++SD TV ++
Sbjct: 61 WGVAFSPDGQTIASASDDKTVKLW 84
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 49/79 (62%), Gaps = 4/79 (5%)
Query: 172 KYITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAF 231
+ +T H+S + +A + DG+ +A+AS T ++++N +G LLQ + + ++ +AF
Sbjct: 92 QTLTGHSSSVRGVAFSPDGQTIASASDDKT-VKLWN-RNGQLLQTLT--GHSSSVWGVAF 147
Query: 232 SSNAQWLAASSDKGTVHVF 250
S + Q +A++SD TV ++
Sbjct: 148 SPDGQTIASASDDKTVKLW 166
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 49/79 (62%), Gaps = 4/79 (5%)
Query: 172 KYITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAF 231
+ +T H+S + +A + DG+ +A+AS T ++++N +G LLQ + + ++ +AF
Sbjct: 379 QTLTGHSSSVRGVAFSPDGQTIASASDDKT-VKLWN-RNGQLLQTLT--GHSSSVWGVAF 434
Query: 232 SSNAQWLAASSDKGTVHVF 250
S + Q +A++SD TV ++
Sbjct: 435 SPDDQTIASASDDKTVKLW 453
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 48/79 (60%), Gaps = 4/79 (5%)
Query: 172 KYITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAF 231
+ +T H+S + +A + DG+ +A+AS T ++++N +G LLQ + + + +AF
Sbjct: 461 QTLTGHSSSVRGVAFSPDGQTIASASDDKT-VKLWN-RNGQLLQTLT--GHSSSVRGVAF 516
Query: 232 SSNAQWLAASSDKGTVHVF 250
S + Q +A++SD TV ++
Sbjct: 517 SPDGQTIASASDDKTVKLW 535
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 48/79 (60%), Gaps = 4/79 (5%)
Query: 172 KYITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAF 231
+ +T H+S + +A + DG+ +A+AS T ++++N +G LLQ + + + +AF
Sbjct: 174 QTLTGHSSSVWGVAFSPDGQTIASASDDKT-VKLWN-RNGQLLQTLT--GHSSSVRGVAF 229
Query: 232 SSNAQWLAASSDKGTVHVF 250
S + Q +A++SD TV ++
Sbjct: 230 SPDGQTIASASDDKTVKLW 248
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 48/79 (60%), Gaps = 4/79 (5%)
Query: 172 KYITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAF 231
+ +T H+S + +A + DG+ +A+AS T ++++N +G LQ + + ++ +AF
Sbjct: 297 QTLTGHSSSVWGVAFSPDGQTIASASDDKT-VKLWN-RNGQHLQTLT--GHSSSVWGVAF 352
Query: 232 SSNAQWLAASSDKGTVHVF 250
S + Q +A++SD TV ++
Sbjct: 353 SPDGQTIASASDDKTVKLW 371
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 47/79 (59%), Gaps = 4/79 (5%)
Query: 172 KYITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAF 231
+ +T H+S + +A + DG+ +A+AS T ++++N +G LLQ + + + +AF
Sbjct: 215 QTLTGHSSSVRGVAFSPDGQTIASASDDKT-VKLWN-RNGQLLQTLT--GHSSSVNGVAF 270
Query: 232 SSNAQWLAASSDKGTVHVF 250
+ Q +A++SD TV ++
Sbjct: 271 RPDGQTIASASDDKTVKLW 289
>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 318
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 49/94 (52%), Gaps = 6/94 (6%)
Query: 161 VRVEDYGTKK-SKYITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRR 219
V+V D T + + H + + S+ ++ DG A++ G + R+++ G L EM
Sbjct: 178 VKVWDLATGRLVTDLKGHTNYVTSVTVSPDGSLCASSDKDG-VARLWDLTKGEALSEMAA 236
Query: 220 GAERAEIYSLAFSSNAQWLAASSDKGTVHVFGLK 253
GA I + FS N W+ A+++KG + +F L+
Sbjct: 237 GAP---INQICFSPNRYWMCAATEKG-IRIFDLE 266
>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|B Chain B, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|C Chain C, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|D Chain D, Crystal Structure Of The Wd Repeat-Containing Protein 61
Length = 321
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 45/85 (52%), Gaps = 3/85 (3%)
Query: 169 KKSKYITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRRGAERAEIYS 228
KK + I SIA + DG+++A+ + G +I +F+ G LL + A I S
Sbjct: 155 KKEYSLDTRGKFILSIAYSPDGKYLASGAIDG-IINIFDIATGKLLHTLEGHA--MPIRS 211
Query: 229 LAFSSNAQWLAASSDKGTVHVFGLK 253
L FS ++Q L +SD G + ++ ++
Sbjct: 212 LTFSPDSQLLVTASDDGYIKIYDVQ 236
Score = 36.2 bits (82), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 38/61 (62%), Gaps = 2/61 (3%)
Query: 193 VATASSKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSNAQWLAASSDKGTVHVFGL 252
+A +SS IR+++ +G ++ + G A ++LAFS ++Q+LA + G V++FG+
Sbjct: 94 IAASSSLDAHIRLWDLENGKQIKSIDAGPVDA--WTLAFSPDSQYLATGTHVGKVNIFGV 151
Query: 253 K 253
+
Sbjct: 152 E 152
>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|C Chain C, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|D Chain D, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
Length = 319
Score = 41.2 bits (95), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 52/99 (52%), Gaps = 9/99 (9%)
Query: 177 HASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSNAQ 236
H S I ++ + DG +A+A G I ++N + + M + + E++SLAFS N
Sbjct: 195 HNSNINTLTASPDGTLIASAGKDGE-IMLWNL---AAKKAMYTLSAQDEVFSLAFSPNRY 250
Query: 237 WLAASSDKGTVHVFGLK----VDSGSPGTSKLHSASEPN 271
WLAA++ G + VF L VD P + +A+EP+
Sbjct: 251 WLAAATATG-IKVFSLDPQYLVDDLRPEFAGYSAAAEPH 288
Score = 28.9 bits (63), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 23/98 (23%), Positives = 47/98 (47%), Gaps = 8/98 (8%)
Query: 159 GQVRVEDYGTKKSKYITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMR 218
G++ + + KK+ Y + + S+A + + ++A A++ G I+VF+ L+ ++R
Sbjct: 218 GEIMLWNLAAKKAMYTLSAQDEVFSLAFSPNRYWLAAATATG--IKVFSLDPQYLVDDLR 275
Query: 219 ------RGAERAEIYSLAFSSNAQWLAASSDKGTVHVF 250
A SLA+S++ Q L A + V+
Sbjct: 276 PEFAGYSAAAEPHAVSLAWSADGQTLFAGYTDNVIRVW 313
>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR
EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces
Lanuginosus Ribosome At 8.9a Resolution
Length = 313
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 51/99 (51%), Gaps = 9/99 (9%)
Query: 177 HASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSNAQ 236
H S I ++ + DG +A+A G I ++N + + M + + E++SLAFS N
Sbjct: 189 HNSNINTLTASPDGTLIASAGKDGE-IMLWNL---AAKKAMYTLSAQDEVFSLAFSPNRY 244
Query: 237 WLAASSDKGTVHVFGLK----VDSGSPGTSKLHSASEPN 271
WLAA++ G + VF L VD P + A+EP+
Sbjct: 245 WLAAATATG-IKVFSLDPQYLVDDLRPEFAGYSKAAEPH 282
Score = 28.5 bits (62), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 23/98 (23%), Positives = 47/98 (47%), Gaps = 8/98 (8%)
Query: 159 GQVRVEDYGTKKSKYITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMR 218
G++ + + KK+ Y + + S+A + + ++A A++ G I+VF+ L+ ++R
Sbjct: 212 GEIMLWNLAAKKAMYTLSAQDEVFSLAFSPNRYWLAAATATG--IKVFSLDPQYLVDDLR 269
Query: 219 ------RGAERAEIYSLAFSSNAQWLAASSDKGTVHVF 250
A SLA+S++ Q L A + V+
Sbjct: 270 PEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVW 307
>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a
Cryo-em Map Of Yeast 80s Ribosome
Length = 314
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 51/99 (51%), Gaps = 9/99 (9%)
Query: 177 HASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSNAQ 236
H S I ++ + DG +A+A G I ++N + + M + + E++SLAFS N
Sbjct: 195 HNSNINTLTASPDGTLIASAGKDGE-IMLWNL---AAKKAMYTLSAQDEVFSLAFSPNRY 250
Query: 237 WLAASSDKGTVHVFGLK----VDSGSPGTSKLHSASEPN 271
WLAA++ G + VF L VD P + A+EP+
Sbjct: 251 WLAAATATG-IKVFSLDPQYLVDDLRPEFAGYSKAAEPH 288
Score = 28.5 bits (62), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 23/98 (23%), Positives = 47/98 (47%), Gaps = 8/98 (8%)
Query: 159 GQVRVEDYGTKKSKYITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMR 218
G++ + + KK+ Y + + S+A + + ++A A++ G I+VF+ L+ ++R
Sbjct: 218 GEIMLWNLAAKKAMYTLSAQDEVFSLAFSPNRYWLAAATATG--IKVFSLDPQYLVDDLR 275
Query: 219 ------RGAERAEIYSLAFSSNAQWLAASSDKGTVHVF 250
A SLA+S++ Q L A + V+
Sbjct: 276 PEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVW 313
>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O2Z|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O30|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5C|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 319
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 51/99 (51%), Gaps = 9/99 (9%)
Query: 177 HASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSNAQ 236
H S I ++ + DG +A+A G I ++N + + M + + E++SLAFS N
Sbjct: 195 HNSNINTLTASPDGTLIASAGKDGE-IMLWNL---AAKKAMYTLSAQDEVFSLAFSPNRY 250
Query: 237 WLAASSDKGTVHVFGLK----VDSGSPGTSKLHSASEPN 271
WLAA++ G + VF L VD P + A+EP+
Sbjct: 251 WLAAATATG-IKVFSLDPQYLVDDLRPEFAGYSKAAEPH 288
Score = 28.5 bits (62), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 23/98 (23%), Positives = 47/98 (47%), Gaps = 8/98 (8%)
Query: 159 GQVRVEDYGTKKSKYITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMR 218
G++ + + KK+ Y + + S+A + + ++A A++ G I+VF+ L+ ++R
Sbjct: 218 GEIMLWNLAAKKAMYTLSAQDEVFSLAFSPNRYWLAAATATG--IKVFSLDPQYLVDDLR 275
Query: 219 ------RGAERAEIYSLAFSSNAQWLAASSDKGTVHVF 250
A SLA+S++ Q L A + V+
Sbjct: 276 PEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVW 313
>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
pdb|3RFG|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
Length = 319
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 51/99 (51%), Gaps = 9/99 (9%)
Query: 177 HASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSNAQ 236
H S I ++ + DG +A+A G I ++N + + M + + E++SLAFS N
Sbjct: 195 HNSNINTLTASPDGTLIASAGKDGE-IMLWNL---AAKKAMYTLSAQDEVFSLAFSPNRY 250
Query: 237 WLAASSDKGTVHVFGLK----VDSGSPGTSKLHSASEPN 271
WLAA++ G + VF L VD P + A+EP+
Sbjct: 251 WLAAATATG-IKVFSLDPQYLVDDLRPEFAGYSKAAEPH 288
Score = 28.1 bits (61), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 23/98 (23%), Positives = 47/98 (47%), Gaps = 8/98 (8%)
Query: 159 GQVRVEDYGTKKSKYITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMR 218
G++ + + KK+ Y + + S+A + + ++A A++ G I+VF+ L+ ++R
Sbjct: 218 GEIMLWNLAAKKAMYTLSAQDEVFSLAFSPNRYWLAAATATG--IKVFSLDPQYLVDDLR 275
Query: 219 ------RGAERAEIYSLAFSSNAQWLAASSDKGTVHVF 250
A SLA+S++ Q L A + V+
Sbjct: 276 PEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVW 313
>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|B Chain B, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|C Chain C, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|D Chain D, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1
Length = 319
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 49/99 (49%), Gaps = 9/99 (9%)
Query: 177 HASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSNAQ 236
H S I ++ + DG +A+A G I ++N + + + E++SLAFS N
Sbjct: 195 HNSNINTLTASPDGTLIASAGKDGE-IXLWNLAAKKAXYTL---SAQDEVFSLAFSPNRY 250
Query: 237 WLAASSDKGTVHVFGLK----VDSGSPGTSKLHSASEPN 271
WLAA++ G + VF L VD P + A+EP+
Sbjct: 251 WLAAATATG-IKVFSLDPQYLVDDLRPEFAGYSKAAEPH 288
Score = 28.9 bits (63), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 23/98 (23%), Positives = 47/98 (47%), Gaps = 8/98 (8%)
Query: 159 GQVRVEDYGTKKSKYITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMR 218
G++ + + KK+ Y + + S+A + + ++A A++ G I+VF+ L+ ++R
Sbjct: 218 GEIXLWNLAAKKAXYTLSAQDEVFSLAFSPNRYWLAAATATG--IKVFSLDPQYLVDDLR 275
Query: 219 ------RGAERAEIYSLAFSSNAQWLAASSDKGTVHVF 250
A SLA+S++ Q L A + V+
Sbjct: 276 PEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVW 313
>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 343
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 24/101 (23%), Positives = 52/101 (51%), Gaps = 4/101 (3%)
Query: 159 GQVRVEDYGTKKSKYITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMR 218
G+++V + + AH S + ++++ +G+++AT L+ +++ ++ L R
Sbjct: 194 GRLKVWNTNFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLL-IWDILN--LTYPQR 250
Query: 219 RGAERAEIYSLAFSSNAQWLAASSDKGTVHVFGLKVDSGSP 259
+ I +AF+ QW+A +D+G V +F L S +P
Sbjct: 251 EFDAGSTINQIAFNPKLQWVAVGTDQG-VKIFNLMTQSKAP 290
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 37.0 bits (84), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 46/106 (43%), Gaps = 2/106 (1%)
Query: 147 GPMVMACPGLLKGQVRVEDYGTKKSKYITAHASRIASIAMTLDGRFVATASSKGTLIRVF 206
G + +C QV + G K + I AH + A + D RF+AT S ++++
Sbjct: 633 GQRIASCGADKTLQVFKAETGEKLLE-IKAHEDEVLCCAFSTDDRFIATCSVDKK-VKIW 690
Query: 207 NTMDGSLLQEMRRGAERAEIYSLAFSSNAQWLAASSDKGTVHVFGL 252
N+M G L+ +E+ SS+ LA S + ++ L
Sbjct: 691 NSMTGELVHTYDEHSEQVNCCHFTNSSHHLLLATGSSDCFLKLWDL 736
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 35.4 bits (80), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 23/97 (23%), Positives = 49/97 (50%), Gaps = 3/97 (3%)
Query: 155 GLLKGQVRVEDYGTKKS-KYITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSL 213
G VR+ D T K K + AH+ ++++ DG + ++S G L R+++T G
Sbjct: 131 GSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG-LCRIWDTASGQC 189
Query: 214 LQEMRRGAERAEIYSLAFSSNAQWLAASSDKGTVHVF 250
L+ + + + + FS N +++ A++ T+ ++
Sbjct: 190 LKTLIDD-DNPPVSFVKFSPNGKYILAATLDNTLKLW 225
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 35.4 bits (80), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 45/223 (20%), Positives = 96/223 (43%), Gaps = 15/223 (6%)
Query: 34 SDPYKPIMRRDFDRNPRGGTQLVSML-FRSNIICLVNSGPHQSNKVMIWDDHENRYLGEL 92
S P KP F G T+ VS + F N L +S + + IW ++ ++ +
Sbjct: 5 STPVKPNYALKFTL--AGHTKAVSSVKFSPNGEWLASSSADK--LIKIWGAYDGKFEKTI 60
Query: 93 SFR----SEVKNXXXXXXXXXXXXNQKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAGP 148
S S+V ++ + +++ + K + ++ N C+ + +
Sbjct: 61 SGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNL 120
Query: 149 MVMACPGLLKGQVRVEDYGTKKS-KYITAHASRIASIAMTLDGRFVATASSKGTLIRVFN 207
+V G VR+ D T K K + AH+ ++++ DG + ++S G L R+++
Sbjct: 121 IV---SGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG-LCRIWD 176
Query: 208 TMDGSLLQEMRRGAERAEIYSLAFSSNAQWLAASSDKGTVHVF 250
T G L+ + + + + FS N +++ A++ T+ ++
Sbjct: 177 TASGQCLKTLIDD-DNPPVSFVKFSPNGKYILAATLDNTLKLW 218
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 35.4 bits (80), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 23/97 (23%), Positives = 49/97 (50%), Gaps = 3/97 (3%)
Query: 155 GLLKGQVRVEDYGTKKS-KYITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSL 213
G VR+ D T K K + AH+ ++++ DG + ++S G L R+++T G
Sbjct: 121 GSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG-LCRIWDTASGQC 179
Query: 214 LQEMRRGAERAEIYSLAFSSNAQWLAASSDKGTVHVF 250
L+ + + + + FS N +++ A++ T+ ++
Sbjct: 180 LKTLIDD-DNPPVSFVKFSPNGKYILAATLDNTLKLW 215
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 35.0 bits (79), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 23/97 (23%), Positives = 49/97 (50%), Gaps = 3/97 (3%)
Query: 155 GLLKGQVRVEDYGTKKS-KYITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSL 213
G VR+ D T K K + AH+ ++++ DG + ++S G L R+++T G
Sbjct: 131 GSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG-LCRIWDTASGQC 189
Query: 214 LQEMRRGAERAEIYSLAFSSNAQWLAASSDKGTVHVF 250
L+ + + + + FS N +++ A++ T+ ++
Sbjct: 190 LKTLIDD-DNPPVSFVKFSPNGKYILAATLDNTLKLW 225
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 35.0 bits (79), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 23/97 (23%), Positives = 49/97 (50%), Gaps = 3/97 (3%)
Query: 155 GLLKGQVRVEDYGTKKS-KYITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSL 213
G VR+ D T K K + AH+ ++++ DG + ++S G L R+++T G
Sbjct: 125 GSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG-LCRIWDTASGQC 183
Query: 214 LQEMRRGAERAEIYSLAFSSNAQWLAASSDKGTVHVF 250
L+ + + + + FS N +++ A++ T+ ++
Sbjct: 184 LKTLIDD-DNPPVSFVKFSPNGKYILAATLDNTLKLW 219
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 35.0 bits (79), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 23/97 (23%), Positives = 49/97 (50%), Gaps = 3/97 (3%)
Query: 155 GLLKGQVRVEDYGTKKS-KYITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSL 213
G VR+ D T K K + AH+ ++++ DG + ++S G L R+++T G
Sbjct: 125 GSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG-LCRIWDTASGQC 183
Query: 214 LQEMRRGAERAEIYSLAFSSNAQWLAASSDKGTVHVF 250
L+ + + + + FS N +++ A++ T+ ++
Sbjct: 184 LKTLIDD-DNPPVSFVKFSPNGKYILAATLDNTLKLW 219
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 35.0 bits (79), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 23/97 (23%), Positives = 49/97 (50%), Gaps = 3/97 (3%)
Query: 155 GLLKGQVRVEDYGTKKS-KYITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSL 213
G VR+ D T K K + AH+ ++++ DG + ++S G L R+++T G
Sbjct: 142 GSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG-LCRIWDTASGQC 200
Query: 214 LQEMRRGAERAEIYSLAFSSNAQWLAASSDKGTVHVF 250
L+ + + + + FS N +++ A++ T+ ++
Sbjct: 201 LKTLIDD-DNPPVSFVKFSPNGKYILAATLDNTLKLW 236
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 35.0 bits (79), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 23/97 (23%), Positives = 49/97 (50%), Gaps = 3/97 (3%)
Query: 155 GLLKGQVRVEDYGTKKS-KYITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSL 213
G VR+ D T K K + AH+ ++++ DG + ++S G L R+++T G
Sbjct: 126 GSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG-LCRIWDTASGQC 184
Query: 214 LQEMRRGAERAEIYSLAFSSNAQWLAASSDKGTVHVF 250
L+ + + + + FS N +++ A++ T+ ++
Sbjct: 185 LKTLIDD-DNPPVSFVKFSPNGKYILAATLDNTLKLW 220
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 35.0 bits (79), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 23/97 (23%), Positives = 49/97 (50%), Gaps = 3/97 (3%)
Query: 155 GLLKGQVRVEDYGTKKS-KYITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSL 213
G VR+ D T K K + AH+ ++++ DG + ++S G L R+++T G
Sbjct: 147 GSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG-LCRIWDTASGQC 205
Query: 214 LQEMRRGAERAEIYSLAFSSNAQWLAASSDKGTVHVF 250
L+ + + + + FS N +++ A++ T+ ++
Sbjct: 206 LKTLIDD-DNPPVSFVKFSPNGKYILAATLDNTLKLW 241
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 35.0 bits (79), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 23/97 (23%), Positives = 49/97 (50%), Gaps = 3/97 (3%)
Query: 155 GLLKGQVRVEDYGTKKS-KYITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSL 213
G VR+ D T K K + AH+ ++++ DG + ++S G L R+++T G
Sbjct: 149 GSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG-LCRIWDTASGQC 207
Query: 214 LQEMRRGAERAEIYSLAFSSNAQWLAASSDKGTVHVF 250
L+ + + + + FS N +++ A++ T+ ++
Sbjct: 208 LKTLIDD-DNPPVSFVKFSPNGKYILAATLDNTLKLW 243
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 34.7 bits (78), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 23/97 (23%), Positives = 49/97 (50%), Gaps = 3/97 (3%)
Query: 155 GLLKGQVRVEDYGTKKS-KYITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSL 213
G VR+ D T K K + AH+ ++++ DG + ++S G L R+++T G
Sbjct: 131 GSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG-LCRIWDTASGQC 189
Query: 214 LQEMRRGAERAEIYSLAFSSNAQWLAASSDKGTVHVF 250
L+ + + + + FS N +++ A++ T+ ++
Sbjct: 190 LKTLIDD-DNPPVSFVKFSPNGKYILAATLDNTLKLW 225
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 34.7 bits (78), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 23/97 (23%), Positives = 49/97 (50%), Gaps = 3/97 (3%)
Query: 155 GLLKGQVRVEDYGTKKS-KYITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSL 213
G VR+ D T K K + AH+ ++++ DG + ++S G L R+++T G
Sbjct: 130 GSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG-LCRIWDTASGQC 188
Query: 214 LQEMRRGAERAEIYSLAFSSNAQWLAASSDKGTVHVF 250
L+ + + + + FS N +++ A++ T+ ++
Sbjct: 189 LKTLIDD-DNPPVSFVKFSPNGKYILAATLDNTLKLW 224
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 34.7 bits (78), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 32/178 (17%), Positives = 79/178 (44%), Gaps = 10/178 (5%)
Query: 78 VMIWDDHENRYLGELSFR----SEVKNXXXXXXXXXXXXNQKVYVYNFTDLKLVDQIETV 133
+ IW ++ ++ +S S+V ++ + +++ + K + ++
Sbjct: 50 IKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGH 109
Query: 134 VNPTGLCDVSQNAGPMVMACPGLLKGQVRVEDYGTKKS-KYITAHASRIASIAMTLDGRF 192
N C+ + + +V G VR+ D T K K + AH+ ++++ DG
Sbjct: 110 SNYVFCCNFNPQSNLIV---SGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSL 166
Query: 193 VATASSKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSNAQWLAASSDKGTVHVF 250
+ ++S G L R+++T G L+ + + + + FS N +++ A++ T+ ++
Sbjct: 167 IVSSSYDG-LCRIWDTASGQCLKTLIDD-DNPPVSFVKFSPNGKYILAATLDNTLKLW 222
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 34.7 bits (78), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 32/178 (17%), Positives = 79/178 (44%), Gaps = 10/178 (5%)
Query: 78 VMIWDDHENRYLGELSFR----SEVKNXXXXXXXXXXXXNQKVYVYNFTDLKLVDQIETV 133
+ IW ++ ++ +S S+V ++ + +++ + K + ++
Sbjct: 50 IKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGH 109
Query: 134 VNPTGLCDVSQNAGPMVMACPGLLKGQVRVEDYGTKKS-KYITAHASRIASIAMTLDGRF 192
N C+ + + +V G VR+ D T K K + AH+ ++++ DG
Sbjct: 110 SNYVFCCNFNPQSNLIV---SGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSL 166
Query: 193 VATASSKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSNAQWLAASSDKGTVHVF 250
+ ++S G L R+++T G L+ + + + + FS N +++ A++ T+ ++
Sbjct: 167 IVSSSYDG-LCRIWDTASGQCLKTLIDD-DNPPVSFVKFSPNGKYILAATLDNTLKLW 222
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 34.7 bits (78), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 32/178 (17%), Positives = 79/178 (44%), Gaps = 10/178 (5%)
Query: 78 VMIWDDHENRYLGELSFR----SEVKNXXXXXXXXXXXXNQKVYVYNFTDLKLVDQIETV 133
+ IW ++ ++ +S S+V ++ + +++ + K + ++
Sbjct: 50 IKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGH 109
Query: 134 VNPTGLCDVSQNAGPMVMACPGLLKGQVRVEDYGTKKS-KYITAHASRIASIAMTLDGRF 192
N C+ + + +V G VR+ D T K K + AH+ ++++ DG
Sbjct: 110 SNYVFCCNFNPQSNLIV---SGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSL 166
Query: 193 VATASSKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSNAQWLAASSDKGTVHVF 250
+ ++S G L R+++T G L+ + + + + FS N +++ A++ T+ ++
Sbjct: 167 IVSSSYDG-LCRIWDTASGQCLKTLIDD-DNPPVSFVKFSPNGKYILAATLDNTLKLW 222
>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana
Length = 694
Score = 33.5 bits (75), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 52/108 (48%), Gaps = 9/108 (8%)
Query: 151 MACPGLLKGQVRVEDYGTKKS-KYITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTM 209
A G G++R+ D S + H + S+A +LD R + +AS T I+++NT+
Sbjct: 444 FALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRT-IKLWNTL 502
Query: 210 DGSLLQEMRRGAE--RAEIYSLAFSSNA---QWLAASSDKGTVHVFGL 252
G + G E R + + FS N ++AS DK TV V+ L
Sbjct: 503 -GECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDK-TVKVWNL 548
Score = 28.5 bits (62), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 42/80 (52%), Gaps = 5/80 (6%)
Query: 166 YGTKKSKYITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRRGAERAE 225
YG + + +T H+ + + ++ DG+F + S G L R+++ G + R +
Sbjct: 419 YGVAQRR-LTGHSHFVEDVVLSSDGQFALSGSWDGEL-RLWDLAAG--VSTRRFVGHTKD 474
Query: 226 IYSLAFS-SNAQWLAASSDK 244
+ S+AFS N Q ++AS D+
Sbjct: 475 VLSVAFSLDNRQIVSASRDR 494
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 32.3 bits (72), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 22/97 (22%), Positives = 48/97 (49%), Gaps = 3/97 (3%)
Query: 155 GLLKGQVRVEDYGTKKS-KYITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSL 213
G VR+ D T K + AH+ ++++ DG + ++S G L R+++T G
Sbjct: 128 GSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG-LCRIWDTASGQC 186
Query: 214 LQEMRRGAERAEIYSLAFSSNAQWLAASSDKGTVHVF 250
L+ + + + + FS N +++ A++ T+ ++
Sbjct: 187 LKTLIDD-DNPPVSFVKFSPNGKYILAATLDNTLKLW 222
>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The
Structure Of A C. Elegans Homologue Of Yeast Actin
Interacting Protein 1 (Aip1).
pdb|1PEV|A Chain A, Crystal Structure Of The Actin Interacting Protein From
Caenorhabditis Elegans
Length = 611
Score = 32.0 bits (71), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 58/120 (48%), Gaps = 15/120 (12%)
Query: 127 VDQIETVVN-----PTGLCDVSQNAGPMVMACPGLLKGQVRVEDYGTKKSKYITAHASRI 181
VD + V N P GL VS + V AC + + +G I+ ++S
Sbjct: 400 VDSSKAVANKLSSQPLGLA-VSADGDIAVAAC----YKHIAIYSHGKLTEVPISYNSS-- 452
Query: 182 ASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSNAQWLAAS 241
+A++ D +FVA + + + V+ + G+ + E++ AEI S+AFS+N +L A+
Sbjct: 453 -CVALSNDKQFVAVGG-QDSKVHVYK-LSGASVSEVKTIVHPAEITSVAFSNNGAFLVAT 509
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 31.6 bits (70), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 21/89 (23%), Positives = 44/89 (49%), Gaps = 3/89 (3%)
Query: 155 GLLKGQVRVEDYGTKKS-KYITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSL 213
G VR+ D T K + AH+ ++++ DG + ++S G L R+++T G
Sbjct: 128 GSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG-LCRIWDTASGQC 186
Query: 214 LQEMRRGAERAEIYSLAFSSNAQWLAASS 242
L+ + + + + FS N +++ A++
Sbjct: 187 LKTLIDD-DNPPVSFVKFSPNGKYILAAT 214
>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|B Chain B, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|C Chain C, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
Length = 340
Score = 31.2 bits (69), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 45/81 (55%), Gaps = 5/81 (6%)
Query: 165 DYGTKKSKYITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRRGAERA 224
+YG + + + H+ ++ + ++ DG+F + S GTL R+++ G+ + R
Sbjct: 74 NYGIPQ-RALRGHSHFVSDVVISSDGQFALSGSWDGTL-RLWDLTTGTTTR--RFVGHTK 129
Query: 225 EIYSLAFSS-NAQWLAASSDK 244
++ S+AFSS N Q ++ S DK
Sbjct: 130 DVLSVAFSSDNRQIVSGSRDK 150
>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 317
Score = 31.2 bits (69), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 45/81 (55%), Gaps = 5/81 (6%)
Query: 165 DYGTKKSKYITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRRGAERA 224
+YG + + + H+ ++ + ++ DG+F + S GTL R+++ G+ + R
Sbjct: 51 NYGIPQ-RALRGHSHFVSDVVISSDGQFALSGSWDGTL-RLWDLTTGTTTR--RFVGHTK 106
Query: 225 EIYSLAFSS-NAQWLAASSDK 244
++ S+AFSS N Q ++ S DK
Sbjct: 107 DVLSVAFSSDNRQIVSGSRDK 127
>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC.
pdb|4GGD|B Chain B, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC
Length = 431
Score = 31.2 bits (69), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 37/71 (52%), Gaps = 4/71 (5%)
Query: 155 GLLKGQVRVEDYGT-KKSKYITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSL 213
G + Q+ + Y T K + H SR+ S+ M+ DG VA+A++ TL R++ + L
Sbjct: 351 GFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETL-RLWRCFE--L 407
Query: 214 LQEMRRGAERA 224
RR E+A
Sbjct: 408 DPARRREREKA 418
>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 420
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 37/71 (52%), Gaps = 4/71 (5%)
Query: 155 GLLKGQVRVEDYGT-KKSKYITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSL 213
G + Q+ + Y T K + H SR+ S+ M+ DG VA+A++ TL R++ + L
Sbjct: 340 GFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETL-RLWRCFE--L 396
Query: 214 LQEMRRGAERA 224
RR E+A
Sbjct: 397 DPARRREREKA 407
>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 318
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Query: 155 GLLKGQVRVEDYGT-KKSKYITAHASRIASIAMTLDGRFVATASSKGTL 202
G + Q+ + Y T K + H SR+ S+ M+ DG VA+A++ TL
Sbjct: 260 GFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETL 308
>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex
pdb|2OVQ|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegc Complex
pdb|2OVR|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegn Complex
Length = 445
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 25/100 (25%), Positives = 46/100 (46%), Gaps = 5/100 (5%)
Query: 155 GLLKGQVRVEDYGTKKSKY-ITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSL 213
G L +RV D T + +T H S + M L + + ++ T +++++ G
Sbjct: 295 GSLDTSIRVWDVETGNCIHTLTGHQSLTS--GMELKDNILVSGNADST-VKIWDIKTGQC 351
Query: 214 LQEMRRGAERAEIYSLAFSSNAQWLAASSDKGTVHVFGLK 253
LQ ++ G + + N ++ SSD GTV ++ LK
Sbjct: 352 LQTLQ-GPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLK 390
>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|D Chain D, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|G Chain G, Crystal Structure Of Mitotic Checkpoint Complex
Length = 401
Score = 29.3 bits (64), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 4/65 (6%)
Query: 150 VMACPGLLKGQVRVEDY---GTKKSKYITAHASRIASIAMTLDGRFVATASSKGTLIRVF 206
+M+ G + + Y G K I AH +R+ A++ DGR ++TA+S L + +
Sbjct: 318 IMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDENL-KFW 376
Query: 207 NTMDG 211
DG
Sbjct: 377 RVYDG 381
Score = 28.9 bits (63), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 23/103 (22%), Positives = 51/103 (49%), Gaps = 5/103 (4%)
Query: 165 DYGTKKSKYITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRRGAERA 224
D G+ + T ++ +AS+ + DG F++ G L+ +++ + L+ M +A
Sbjct: 121 DSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNG-LVDIYDVESQTKLRTM--AGHQA 177
Query: 225 EIYSLAFSSNAQWLAASSDKGTVHVFGLKVDSGSPGTSKLHSA 267
+ L++ N L++ S G +H +++ + GT + HS+
Sbjct: 178 RVGCLSW--NRHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSS 218
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 29.3 bits (64), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 19/93 (20%), Positives = 42/93 (45%), Gaps = 18/93 (19%)
Query: 177 HASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRRGAERAE----------- 225
H S + + + DG ++AT +K T +V+ DGSL+ + + +
Sbjct: 63 HTSVVCCVKFSNDGEYLATGCNKTT--QVYRVSDGSLVARLSDDSAANKDPENLNTSSSP 120
Query: 226 -----IYSLAFSSNAQWLAASSDKGTVHVFGLK 253
I S+ FS + ++LA ++ + ++ ++
Sbjct: 121 SSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIE 153
>pdb|1M2D|A Chain A, Crystal Structure At 1.05 Angstroms Resolution Of The
Cys59ser Variant Of The Thioredoxin-Like [2fe-2s]
Ferredoxin From Aquifex Aeolicus
pdb|1M2D|B Chain B, Crystal Structure At 1.05 Angstroms Resolution Of The
Cys59ser Variant Of The Thioredoxin-Like [2fe-2s]
Ferredoxin From Aquifex Aeolicus
Length = 110
Score = 28.5 bits (62), Expect = 5.9, Method: Composition-based stats.
Identities = 16/37 (43%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
Query: 130 IETVVNPTGLCDVSQNAGPMVMACP-GLLKGQVRVED 165
+ TV+ PTG + S GP+V+ P G+ GQV+ ED
Sbjct: 46 MTTVITPTGCMNASM-MGPVVVVYPDGVWYGQVKPED 81
>pdb|1RMG|A Chain A, Rhamnogalacturonase A From Aspergillus Aculeatus
Length = 422
Score = 28.5 bits (62), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 37/85 (43%), Gaps = 4/85 (4%)
Query: 139 LCDVSQNAGPMVMACPGLLK--GQVRVEDYGTKKSKYITAHASRIASIAMTLDGRFVATA 196
+ D S + GP + + K G V + + ++T ++ A+ LDG T
Sbjct: 29 VADNSTDVGPAITSAWAACKSGGLVYIPSGNYALNTWVTLTGG--SATAIQLDGIIYRTG 86
Query: 197 SSKGTLIRVFNTMDGSLLQEMRRGA 221
++ G +I V +T D L +GA
Sbjct: 87 TASGNMIAVTDTTDFELFSSTSKGA 111
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,514,431
Number of Sequences: 62578
Number of extensions: 398743
Number of successful extensions: 866
Number of sequences better than 100.0: 42
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 32
Number of HSP's that attempted gapping in prelim test: 807
Number of HSP's gapped (non-prelim): 71
length of query: 359
length of database: 14,973,337
effective HSP length: 100
effective length of query: 259
effective length of database: 8,715,537
effective search space: 2257324083
effective search space used: 2257324083
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)