Query 018248
Match_columns 359
No_of_seqs 733 out of 1968
Neff 11.7
Searched_HMMs 46136
Date Fri Mar 29 07:23:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018248.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018248hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0271 Notchless-like WD40 re 100.0 3E-48 6.5E-53 302.7 25.8 276 4-335 113-479 (480)
2 KOG0272 U4/U6 small nuclear ri 100.0 1.4E-45 3.1E-50 291.1 22.0 278 5-335 174-458 (459)
3 KOG2111 Uncharacterized conser 100.0 4.2E-43 9.2E-48 267.9 33.2 332 6-358 5-343 (346)
4 KOG0286 G-protein beta subunit 100.0 4.1E-41 8.9E-46 254.1 31.9 281 3-335 52-343 (343)
5 KOG0279 G protein beta subunit 100.0 3.7E-41 7.9E-46 252.7 31.2 290 4-337 13-313 (315)
6 KOG2110 Uncharacterized conser 100.0 1.1E-38 2.4E-43 248.5 35.6 341 4-356 3-349 (391)
7 KOG0272 U4/U6 small nuclear ri 100.0 4.9E-40 1.1E-44 259.9 17.8 235 4-251 215-458 (459)
8 KOG0315 G-protein beta subunit 100.0 1.6E-37 3.4E-42 229.6 28.0 264 19-338 11-289 (311)
9 KOG0273 Beta-transducin family 100.0 1.6E-37 3.4E-42 249.0 29.5 277 4-337 233-523 (524)
10 KOG0263 Transcription initiati 100.0 7E-38 1.5E-42 266.0 25.5 241 6-257 378-653 (707)
11 KOG0273 Beta-transducin family 100.0 2.2E-37 4.7E-42 248.2 26.7 281 4-338 176-483 (524)
12 KOG0315 G-protein beta subunit 100.0 2.7E-37 5.9E-42 228.4 24.1 244 4-258 38-293 (311)
13 KOG0295 WD40 repeat-containing 100.0 1.9E-37 4E-42 241.0 23.3 277 5-336 107-405 (406)
14 KOG0645 WD40 repeat protein [G 100.0 6.7E-36 1.5E-40 223.6 30.4 284 3-337 11-311 (312)
15 KOG0271 Notchless-like WD40 re 100.0 1.2E-37 2.5E-42 243.7 20.5 238 4-251 155-479 (480)
16 KOG0285 Pleiotropic regulator 100.0 1.5E-36 3.2E-41 235.7 25.8 298 3-349 148-451 (460)
17 KOG0284 Polyadenylation factor 100.0 7.2E-38 1.6E-42 246.7 17.3 279 5-337 95-380 (464)
18 KOG0318 WD40 repeat stress pro 100.0 2.9E-35 6.4E-40 239.1 32.7 287 3-338 187-561 (603)
19 cd00200 WD40 WD40 domain, foun 100.0 7.8E-35 1.7E-39 241.1 35.1 277 4-335 7-289 (289)
20 KOG0265 U5 snRNP-specific prot 100.0 1.1E-35 2.4E-40 225.5 26.3 281 3-336 44-337 (338)
21 KOG0643 Translation initiation 100.0 1.2E-35 2.5E-40 221.9 24.8 293 2-338 6-318 (327)
22 KOG0279 G protein beta subunit 100.0 3.2E-35 7E-40 220.9 26.9 245 41-339 7-264 (315)
23 KOG0293 WD40 repeat-containing 100.0 2E-36 4.3E-41 239.0 21.4 284 3-338 221-514 (519)
24 KOG0266 WD40 repeat-containing 100.0 6.1E-35 1.3E-39 253.4 31.4 284 3-337 156-454 (456)
25 KOG0291 WD40-repeat-containing 100.0 2.9E-34 6.3E-39 242.7 34.1 322 4-339 143-510 (893)
26 KOG0286 G-protein beta subunit 100.0 7.1E-35 1.5E-39 220.4 27.0 235 5-251 96-343 (343)
27 KOG0291 WD40-repeat-containing 100.0 7.1E-35 1.5E-39 246.4 30.0 295 6-338 307-613 (893)
28 KOG1407 WD40 repeat protein [F 100.0 4.5E-35 9.7E-40 218.1 24.9 271 3-328 17-293 (313)
29 PLN00181 protein SPA1-RELATED; 100.0 1.1E-33 2.4E-38 263.1 37.0 289 4-336 481-792 (793)
30 KOG0318 WD40 repeat stress pro 100.0 6.4E-33 1.4E-37 225.6 35.2 250 3-259 56-356 (603)
31 KOG0263 Transcription initiati 100.0 5.5E-35 1.2E-39 248.5 23.0 241 50-342 378-654 (707)
32 KOG0319 WD40-repeat-containing 100.0 1.2E-34 2.6E-39 244.4 24.0 288 4-346 103-583 (775)
33 KOG0282 mRNA splicing factor [ 100.0 2.9E-35 6.2E-40 236.8 16.5 281 3-335 211-503 (503)
34 KOG0276 Vesicle coat complex C 100.0 1.1E-33 2.3E-38 234.7 25.1 277 3-333 10-295 (794)
35 KOG0296 Angio-associated migra 100.0 8.7E-33 1.9E-37 215.2 27.8 278 3-337 61-398 (399)
36 KOG0316 Conserved WD40 repeat- 100.0 4.8E-33 1E-37 204.4 23.8 274 4-333 15-296 (307)
37 KOG0295 WD40 repeat-containing 100.0 2.9E-33 6.3E-38 217.7 21.8 240 3-252 147-405 (406)
38 KOG0284 Polyadenylation factor 100.0 1.1E-34 2.5E-39 228.7 13.6 243 2-256 134-383 (464)
39 KOG0281 Beta-TrCP (transducin 100.0 6.4E-34 1.4E-38 220.5 15.6 277 4-338 195-478 (499)
40 KOG0278 Serine/threonine kinas 100.0 4.5E-33 9.8E-38 206.3 16.7 282 3-341 11-301 (334)
41 KOG0296 Angio-associated migra 100.0 8E-32 1.7E-36 209.8 24.4 239 4-253 104-398 (399)
42 KOG0319 WD40-repeat-containing 100.0 5.3E-32 1.1E-36 228.6 24.1 278 6-339 323-621 (775)
43 KOG0292 Vesicle coat complex C 100.0 2.1E-31 4.6E-36 229.3 26.6 280 4-339 7-323 (1202)
44 KOG0265 U5 snRNP-specific prot 100.0 1.2E-31 2.6E-36 203.7 22.2 249 47-338 44-297 (338)
45 KOG0306 WD40-repeat-containing 100.0 1.6E-31 3.5E-36 226.1 25.3 278 3-338 370-665 (888)
46 KOG1446 Histone H3 (Lys4) meth 100.0 1.5E-29 3.3E-34 193.9 32.7 278 5-337 13-303 (311)
47 KOG0645 WD40 repeat protein [G 100.0 9.6E-31 2.1E-35 196.1 24.4 237 2-253 57-311 (312)
48 KOG0283 WD40 repeat-containing 100.0 4.7E-31 1E-35 226.4 24.7 287 3-339 264-578 (712)
49 KOG0266 WD40 repeat-containing 100.0 1.8E-30 3.8E-35 225.6 28.1 243 49-338 158-410 (456)
50 KOG0277 Peroxisomal targeting 100.0 1E-30 2.2E-35 194.3 20.9 276 9-335 11-307 (311)
51 KOG0292 Vesicle coat complex C 100.0 2E-29 4.3E-34 217.3 31.4 306 3-339 48-399 (1202)
52 KOG0285 Pleiotropic regulator 100.0 1E-30 2.2E-35 203.4 21.2 237 48-338 149-390 (460)
53 KOG0772 Uncharacterized conser 100.0 1.7E-30 3.6E-35 211.2 23.2 285 3-339 164-488 (641)
54 KOG0313 Microtubule binding pr 100.0 5.8E-30 1.3E-34 200.5 25.0 278 4-338 103-419 (423)
55 KOG0316 Conserved WD40 repeat- 100.0 3.2E-30 6.9E-35 189.6 21.4 238 48-339 15-259 (307)
56 KOG0276 Vesicle coat complex C 100.0 2.3E-30 4.9E-35 215.1 21.7 239 48-338 11-258 (794)
57 KOG0268 Sof1-like rRNA process 100.0 6.8E-31 1.5E-35 204.6 15.2 279 3-338 63-346 (433)
58 KOG0288 WD40 repeat protein Ti 100.0 1.6E-30 3.5E-35 205.7 17.4 278 3-335 172-459 (459)
59 cd00200 WD40 WD40 domain, foun 100.0 1.5E-28 3.2E-33 203.4 29.9 235 4-251 49-289 (289)
60 KOG0310 Conserved WD40 repeat- 100.0 5.4E-29 1.2E-33 201.1 24.7 275 5-335 25-307 (487)
61 KOG0973 Histone transcription 100.0 8.1E-29 1.8E-33 218.2 26.9 289 5-345 12-363 (942)
62 KOG0275 Conserved WD40 repeat- 100.0 4.7E-30 1E-34 197.6 16.3 280 5-335 212-507 (508)
63 KOG0282 mRNA splicing factor [ 100.0 1.8E-30 4E-35 209.3 14.6 236 3-251 255-503 (503)
64 KOG0305 Anaphase promoting com 100.0 2.2E-28 4.7E-33 204.6 27.3 277 11-344 182-468 (484)
65 PLN00181 protein SPA1-RELATED; 100.0 6.4E-28 1.4E-32 224.8 31.2 235 6-252 532-792 (793)
66 KOG0274 Cdc4 and related F-box 100.0 3.1E-28 6.7E-33 211.1 26.7 272 5-339 207-484 (537)
67 KOG0305 Anaphase promoting com 100.0 1.8E-28 4E-33 205.0 24.0 240 6-256 217-464 (484)
68 KOG0299 U3 snoRNP-associated p 100.0 8.5E-28 1.8E-32 192.9 26.4 286 4-337 140-456 (479)
69 KOG0301 Phospholipase A2-activ 100.0 2.9E-28 6.3E-33 204.8 23.9 274 4-339 12-290 (745)
70 KOG0289 mRNA splicing factor [ 100.0 1.5E-27 3.1E-32 190.2 26.3 279 6-336 219-505 (506)
71 KOG0640 mRNA cleavage stimulat 100.0 2.4E-28 5.2E-33 186.9 20.9 285 4-338 110-427 (430)
72 KOG0641 WD40 repeat protein [G 100.0 5.7E-26 1.2E-30 166.6 31.1 282 5-337 31-349 (350)
73 KOG0277 Peroxisomal targeting 100.0 1.2E-28 2.6E-33 183.3 16.7 237 6-252 60-308 (311)
74 PTZ00421 coronin; Provisional 100.0 3.3E-26 7.2E-31 198.2 34.5 240 7-256 21-293 (493)
75 KOG0647 mRNA export protein (c 100.0 3.1E-27 6.6E-32 180.1 24.3 272 2-327 23-313 (347)
76 KOG0306 WD40-repeat-containing 100.0 3.9E-28 8.4E-33 205.8 21.4 235 7-254 413-665 (888)
77 KOG0293 WD40 repeat-containing 100.0 1.7E-28 3.7E-33 194.4 17.3 238 4-255 267-515 (519)
78 KOG1332 Vesicle coat complex C 100.0 6.6E-28 1.4E-32 178.4 18.8 260 2-347 7-294 (299)
79 KOG0281 Beta-TrCP (transducin 100.0 3.3E-29 7.1E-34 194.5 12.0 226 50-339 197-430 (499)
80 PTZ00421 coronin; Provisional 100.0 4E-26 8.7E-31 197.7 31.2 199 94-338 74-291 (493)
81 KOG0278 Serine/threonine kinas 100.0 1.6E-28 3.4E-33 182.4 13.9 238 4-257 57-301 (334)
82 KOG2096 WD40 repeat protein [G 100.0 7.5E-27 1.6E-31 179.4 23.4 281 4-338 84-403 (420)
83 PTZ00420 coronin; Provisional 100.0 5.8E-26 1.3E-30 197.6 32.0 220 74-338 52-294 (568)
84 KOG0275 Conserved WD40 repeat- 100.0 5.3E-28 1.2E-32 186.3 16.5 243 48-338 211-468 (508)
85 KOG0294 WD40 repeat-containing 100.0 1.6E-26 3.5E-31 177.1 23.0 239 2-258 39-286 (362)
86 KOG1036 Mitotic spindle checkp 100.0 6.1E-26 1.3E-30 173.5 25.4 269 1-327 8-294 (323)
87 KOG0313 Microtubule binding pr 100.0 2.1E-26 4.6E-31 180.6 23.1 239 4-254 142-419 (423)
88 KOG2055 WD40 repeat protein [G 100.0 2.6E-26 5.7E-31 184.5 24.1 284 3-337 210-512 (514)
89 KOG1407 WD40 repeat protein [F 100.0 4.3E-26 9.4E-31 170.4 23.2 236 3-253 61-311 (313)
90 KOG0973 Histone transcription 100.0 7.6E-27 1.7E-31 205.8 22.6 245 3-256 66-358 (942)
91 KOG1446 Histone H3 (Lys4) meth 100.0 3.9E-25 8.4E-30 169.9 28.7 241 50-338 14-263 (311)
92 KOG0639 Transducin-like enhanc 100.0 1E-26 2.2E-31 188.9 21.1 279 3-336 416-703 (705)
93 KOG0310 Conserved WD40 repeat- 100.0 3.8E-26 8.2E-31 184.8 23.5 237 5-256 67-312 (487)
94 KOG0288 WD40 repeat protein Ti 100.0 5.2E-27 1.1E-31 185.9 18.1 233 6-251 219-459 (459)
95 KOG1408 WD40 repeat protein [F 100.0 7.2E-26 1.6E-30 191.4 24.4 283 9-339 327-715 (1080)
96 KOG4283 Transcription-coupled 100.0 8.2E-26 1.8E-30 171.9 21.8 285 3-336 40-364 (397)
97 PTZ00420 coronin; Provisional 99.9 7.9E-25 1.7E-29 190.6 29.6 224 4-235 72-318 (568)
98 KOG0300 WD40 repeat-containing 99.9 1E-25 2.2E-30 173.3 21.1 282 4-338 146-477 (481)
99 KOG0643 Translation initiation 99.9 3.3E-25 7.2E-30 166.3 22.3 242 4-255 50-319 (327)
100 KOG0274 Cdc4 and related F-box 99.9 2.3E-25 4.9E-30 193.3 24.8 235 4-258 247-487 (537)
101 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 2E-23 4.4E-28 174.3 35.8 266 18-338 1-280 (300)
102 KOG0264 Nucleosome remodeling 99.9 7E-26 1.5E-30 181.7 19.4 244 4-254 122-405 (422)
103 KOG0308 Conserved WD40 repeat- 99.9 3.7E-26 8.1E-31 190.9 18.3 235 11-256 29-288 (735)
104 KOG1274 WD40 repeat protein [G 99.9 1.8E-24 3.9E-29 187.7 27.6 273 4-335 11-298 (933)
105 KOG0641 WD40 repeat protein [G 99.9 9.8E-24 2.1E-28 154.9 26.5 244 3-253 86-349 (350)
106 KOG0294 WD40 repeat-containing 99.9 5.5E-24 1.2E-28 163.4 25.8 262 20-339 3-283 (362)
107 KOG0289 mRNA splicing factor [ 99.9 8.1E-25 1.7E-29 174.7 22.0 232 52-335 221-460 (506)
108 KOG0646 WD40 repeat protein [G 99.9 1E-24 2.2E-29 175.6 22.7 273 27-338 18-308 (476)
109 KOG1273 WD40 repeat protein [G 99.9 2.4E-24 5.1E-29 165.5 22.6 274 9-338 26-323 (405)
110 KOG0647 mRNA export protein (c 99.9 2.3E-24 4.9E-29 164.5 21.4 228 3-242 69-312 (347)
111 KOG0772 Uncharacterized conser 99.9 4.8E-25 1E-29 179.7 18.7 241 48-335 165-443 (641)
112 KOG1539 WD repeat protein [Gen 99.9 8.4E-24 1.8E-28 181.7 26.1 191 97-336 450-647 (910)
113 KOG0269 WD40 repeat-containing 99.9 5.8E-25 1.3E-29 187.3 19.0 282 6-338 39-341 (839)
114 KOG0299 U3 snoRNP-associated p 99.9 4.3E-24 9.3E-29 171.8 21.5 233 4-252 200-455 (479)
115 KOG1539 WD repeat protein [Gen 99.9 1.1E-22 2.3E-27 175.0 30.0 321 3-339 199-608 (910)
116 KOG0264 Nucleosome remodeling 99.9 6.2E-24 1.3E-28 170.6 20.9 254 48-337 122-404 (422)
117 KOG1036 Mitotic spindle checkp 99.9 2.3E-23 5E-28 159.5 23.0 225 4-243 52-294 (323)
118 KOG2106 Uncharacterized conser 99.9 4.9E-22 1.1E-26 161.9 31.6 316 3-336 243-625 (626)
119 KOG2919 Guanine nucleotide-bin 99.9 1.7E-23 3.8E-28 161.3 22.0 286 8-345 51-375 (406)
120 KOG2445 Nuclear pore complex c 99.9 2.7E-23 5.8E-28 159.2 22.8 245 2-256 9-321 (361)
121 KOG2106 Uncharacterized conser 99.9 8.4E-22 1.8E-26 160.6 32.2 276 6-339 200-479 (626)
122 KOG0639 Transducin-like enhanc 99.9 1.7E-24 3.7E-29 176.1 16.4 235 5-252 464-703 (705)
123 KOG0650 WD40 repeat nucleolar 99.9 8.3E-24 1.8E-28 175.5 20.5 291 4-334 398-732 (733)
124 KOG0268 Sof1-like rRNA process 99.9 1.5E-24 3.2E-29 169.4 14.3 237 3-257 106-349 (433)
125 KOG0267 Microtubule severing p 99.9 2.2E-25 4.7E-30 188.6 10.1 212 26-256 13-229 (825)
126 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 1.2E-21 2.5E-26 163.7 32.7 236 7-256 31-282 (300)
127 KOG1063 RNA polymerase II elon 99.9 9.9E-23 2.1E-27 171.8 25.7 290 3-339 264-650 (764)
128 KOG2048 WD40 repeat protein [G 99.9 5.8E-22 1.3E-26 166.8 29.6 281 5-338 24-320 (691)
129 KOG0308 Conserved WD40 repeat- 99.9 1.7E-23 3.7E-28 175.2 19.8 306 3-338 70-394 (735)
130 KOG2055 WD40 repeat protein [G 99.9 2.9E-23 6.2E-28 167.1 19.9 238 6-253 257-512 (514)
131 KOG1274 WD40 repeat protein [G 99.9 1.2E-22 2.6E-27 176.4 25.0 243 48-338 11-263 (933)
132 KOG0300 WD40 repeat-containing 99.9 9.4E-23 2E-27 157.1 18.8 245 40-338 139-429 (481)
133 KOG2096 WD40 repeat protein [G 99.9 5.6E-22 1.2E-26 152.8 23.0 200 48-255 84-310 (420)
134 KOG0646 WD40 repeat protein [G 99.9 1.4E-22 3.1E-27 163.4 20.6 231 19-258 51-312 (476)
135 KOG0301 Phospholipase A2-activ 99.9 2.1E-22 4.6E-27 169.9 21.9 232 5-258 56-293 (745)
136 KOG2445 Nuclear pore complex c 99.9 2.1E-21 4.5E-26 148.9 25.3 271 44-345 7-326 (361)
137 KOG0640 mRNA cleavage stimulat 99.9 6.2E-23 1.4E-27 157.5 16.8 240 4-254 170-427 (430)
138 KOG0302 Ribosome Assembly prot 99.9 6.5E-23 1.4E-27 161.1 17.2 206 94-341 150-382 (440)
139 KOG1034 Transcriptional repres 99.9 1.3E-21 2.7E-26 151.4 22.2 286 3-336 35-382 (385)
140 KOG2048 WD40 repeat protein [G 99.9 4.2E-21 9.1E-26 161.7 26.8 239 50-339 25-277 (691)
141 KOG0302 Ribosome Assembly prot 99.9 7.9E-22 1.7E-26 155.1 19.7 202 48-256 149-381 (440)
142 KOG0267 Microtubule severing p 99.9 1.3E-23 2.7E-28 178.0 10.5 229 4-245 26-260 (825)
143 KOG4328 WD40 protein [Function 99.9 1.3E-21 2.8E-26 157.6 21.1 245 4-256 184-453 (498)
144 KOG0283 WD40 repeat-containing 99.9 3.5E-22 7.7E-27 172.3 18.9 203 43-256 363-579 (712)
145 KOG1332 Vesicle coat complex C 99.9 1.4E-22 3.1E-27 150.3 13.9 203 94-338 10-242 (299)
146 KOG4378 Nuclear protein COP1 [ 99.9 1.1E-21 2.5E-26 159.6 20.2 239 5-256 33-283 (673)
147 KOG1538 Uncharacterized conser 99.9 1.8E-21 4E-26 164.0 21.5 273 6-338 12-294 (1081)
148 KOG0270 WD40 repeat-containing 99.9 1.8E-21 3.8E-26 156.2 19.5 235 17-257 191-453 (463)
149 KOG1445 Tumor-specific antigen 99.9 5.4E-22 1.2E-26 166.2 16.8 114 4-123 77-201 (1012)
150 KOG4283 Transcription-coupled 99.9 2.5E-20 5.5E-25 142.3 23.5 205 48-257 41-280 (397)
151 KOG0321 WD40 repeat-containing 99.9 4.7E-21 1E-25 160.4 20.8 281 10-338 53-392 (720)
152 KOG0269 WD40 repeat-containing 99.9 1.3E-21 2.8E-26 167.2 15.8 237 51-338 40-297 (839)
153 KOG1408 WD40 repeat protein [F 99.9 7.2E-21 1.6E-25 161.6 18.1 238 6-254 459-714 (1080)
154 KOG0650 WD40 repeat nucleolar 99.9 1.3E-20 2.8E-25 156.8 19.0 240 48-336 398-679 (733)
155 KOG4378 Nuclear protein COP1 [ 99.9 1.8E-20 3.8E-25 152.7 19.3 264 21-339 6-282 (673)
156 KOG1524 WD40 repeat-containing 99.9 1.2E-20 2.7E-25 155.1 18.0 260 4-335 12-284 (737)
157 KOG1007 WD repeat protein TSSC 99.9 8.4E-20 1.8E-24 139.0 20.8 302 17-338 25-362 (370)
158 KOG1063 RNA polymerase II elon 99.9 3.9E-19 8.3E-24 150.4 26.3 286 3-336 51-390 (764)
159 KOG0322 G-protein beta subunit 99.9 1.7E-20 3.8E-25 140.9 15.3 277 4-336 12-322 (323)
160 PRK11028 6-phosphogluconolacto 99.9 5.5E-18 1.2E-22 143.0 32.6 268 26-341 11-308 (330)
161 KOG1273 WD40 repeat protein [G 99.9 3.2E-19 6.9E-24 137.5 22.4 246 53-338 26-281 (405)
162 KOG0307 Vesicle coat complex C 99.9 4.5E-21 9.8E-26 170.7 13.0 244 6-256 64-330 (1049)
163 KOG0321 WD40 repeat-containing 99.9 5.6E-20 1.2E-24 154.1 18.4 248 3-257 97-395 (720)
164 KOG0270 WD40 repeat-containing 99.9 4.7E-19 1E-23 142.5 22.6 277 11-338 130-450 (463)
165 KOG1188 WD40 repeat protein [G 99.8 2E-19 4.4E-24 140.0 18.9 277 19-341 41-350 (376)
166 KOG1009 Chromatin assembly com 99.8 5.6E-18 1.2E-22 134.9 24.8 286 5-342 12-377 (434)
167 KOG0307 Vesicle coat complex C 99.8 5.9E-20 1.3E-24 163.7 14.1 282 8-339 8-329 (1049)
168 COG2319 FOG: WD40 repeat [Gene 99.8 1.9E-16 4.1E-21 138.9 36.2 288 3-340 62-362 (466)
169 KOG1587 Cytoplasmic dynein int 99.8 1.2E-17 2.6E-22 144.5 24.0 261 27-338 222-517 (555)
170 KOG1272 WD40-repeat-containing 99.8 1.7E-19 3.6E-24 145.9 10.4 227 8-253 131-362 (545)
171 KOG2321 WD40 repeat protein [G 99.8 1.3E-17 2.7E-22 138.7 21.5 290 4-355 49-357 (703)
172 KOG1538 Uncharacterized conser 99.8 2.8E-18 6.1E-23 145.1 17.6 234 4-254 51-294 (1081)
173 KOG4227 WD40 repeat protein [G 99.8 2.3E-17 4.9E-22 131.2 21.2 305 4-336 54-386 (609)
174 KOG1034 Transcriptional repres 99.8 8.7E-18 1.9E-22 130.3 18.2 238 4-253 87-383 (385)
175 KOG4328 WD40 protein [Function 99.8 8E-18 1.7E-22 136.0 18.6 200 48-253 184-399 (498)
176 KOG0644 Uncharacterized conser 99.8 4.9E-19 1.1E-23 152.9 12.1 285 4-353 188-482 (1113)
177 KOG1009 Chromatin assembly com 99.8 1.7E-17 3.7E-22 132.2 19.8 240 4-256 63-375 (434)
178 KOG4497 Uncharacterized conser 99.8 2.7E-17 5.9E-22 127.8 20.1 274 11-336 13-390 (447)
179 PRK11028 6-phosphogluconolacto 99.8 3.5E-16 7.6E-21 132.0 27.9 238 6-255 34-306 (330)
180 KOG2919 Guanine nucleotide-bin 99.8 5.8E-17 1.3E-21 125.6 20.8 237 53-338 52-328 (406)
181 KOG1517 Guanine nucleotide bin 99.8 3.2E-17 7E-22 145.3 21.6 285 8-338 1066-1382(1387)
182 KOG1007 WD repeat protein TSSC 99.8 1.1E-17 2.4E-22 127.6 15.8 197 4-208 121-360 (370)
183 KOG0290 Conserved WD40 repeat- 99.8 1.5E-16 3.3E-21 121.6 21.9 241 6-256 44-321 (364)
184 KOG1524 WD40 repeat-containing 99.8 8.1E-18 1.8E-22 138.7 16.1 205 20-252 77-285 (737)
185 PRK01742 tolB translocation pr 99.8 1.5E-16 3.2E-21 138.3 24.8 214 75-343 183-407 (429)
186 KOG1963 WD40 repeat protein [G 99.8 6.2E-16 1.3E-20 134.8 27.9 284 12-340 22-378 (792)
187 KOG0642 Cell-cycle nuclear pro 99.8 4.1E-18 8.8E-23 141.1 13.5 244 4-256 292-564 (577)
188 KOG0303 Actin-binding protein 99.8 2.2E-16 4.8E-21 125.5 22.0 234 61-340 43-297 (472)
189 KOG1963 WD40 repeat protein [G 99.8 9.8E-16 2.1E-20 133.6 27.4 293 4-338 203-539 (792)
190 KOG2110 Uncharacterized conser 99.8 1.3E-15 2.8E-20 120.3 25.4 214 76-339 26-250 (391)
191 PRK01742 tolB translocation pr 99.8 2.2E-16 4.7E-21 137.3 23.1 211 27-254 184-402 (429)
192 COG2319 FOG: WD40 repeat [Gene 99.8 1.7E-14 3.8E-19 126.4 35.6 313 8-338 111-443 (466)
193 PRK03629 tolB translocation pr 99.8 3.3E-15 7.2E-20 129.6 30.3 178 75-256 178-366 (429)
194 KOG0771 Prolactin regulatory e 99.8 2.5E-17 5.4E-22 132.0 15.2 196 54-256 148-357 (398)
195 KOG2394 WD40 protein DMR-N9 [G 99.8 1.6E-16 3.5E-21 131.2 20.0 224 9-257 126-366 (636)
196 KOG2315 Predicted translation 99.8 2.7E-15 5.8E-20 124.7 26.6 275 7-337 35-390 (566)
197 KOG0303 Actin-binding protein 99.8 1.6E-16 3.4E-21 126.4 18.4 222 4-234 79-320 (472)
198 PRK05137 tolB translocation pr 99.8 2.4E-15 5.1E-20 131.3 27.1 175 76-255 182-368 (435)
199 KOG1334 WD40 repeat protein [G 99.7 5.3E-17 1.2E-21 132.4 14.8 285 3-336 139-465 (559)
200 KOG2139 WD40 repeat protein [G 99.7 2.2E-15 4.7E-20 118.8 23.2 237 7-255 99-385 (445)
201 KOG0642 Cell-cycle nuclear pro 99.7 4.9E-17 1.1E-21 134.8 14.7 241 48-338 292-562 (577)
202 KOG1587 Cytoplasmic dynein int 99.7 4.1E-16 8.9E-21 135.1 21.0 242 5-256 241-519 (555)
203 KOG0649 WD40 repeat protein [G 99.7 7.2E-15 1.6E-19 109.8 24.0 226 8-254 12-275 (325)
204 KOG0649 WD40 repeat protein [G 99.7 6.8E-15 1.5E-19 109.9 22.8 231 3-250 59-313 (325)
205 KOG0290 Conserved WD40 repeat- 99.7 8.4E-16 1.8E-20 117.6 18.4 235 4-249 94-361 (364)
206 PRK04922 tolB translocation pr 99.7 2.7E-15 5.8E-20 130.8 24.3 177 76-256 184-371 (433)
207 KOG1523 Actin-related protein 99.7 3.3E-15 7.2E-20 115.9 20.6 204 6-256 10-239 (361)
208 KOG0322 G-protein beta subunit 99.7 5.8E-16 1.3E-20 116.9 16.0 237 5-252 55-322 (323)
209 PRK02889 tolB translocation pr 99.7 8.7E-15 1.9E-19 127.2 26.0 186 63-256 164-363 (427)
210 PF08662 eIF2A: Eukaryotic tra 99.7 1.3E-15 2.8E-20 116.8 17.9 149 99-255 9-181 (194)
211 PRK05137 tolB translocation pr 99.7 2.3E-14 5.1E-19 125.1 26.8 218 28-256 183-415 (435)
212 PRK04922 tolB translocation pr 99.7 7.7E-15 1.7E-19 127.9 23.7 214 28-254 185-412 (433)
213 KOG1523 Actin-related protein 99.7 2.2E-15 4.8E-20 116.8 17.5 211 94-337 9-236 (361)
214 PF08662 eIF2A: Eukaryotic tra 99.7 4E-15 8.8E-20 114.1 18.6 163 139-354 10-193 (194)
215 KOG1188 WD40 repeat protein [G 99.7 1.3E-15 2.8E-20 119.0 15.7 186 112-339 48-244 (376)
216 PRK03629 tolB translocation pr 99.7 9.3E-15 2E-19 126.9 22.9 219 5-233 197-427 (429)
217 KOG1272 WD40-repeat-containing 99.7 8E-17 1.7E-21 130.6 8.9 192 53-256 132-326 (545)
218 PRK02889 tolB translocation pr 99.7 4.1E-14 9E-19 123.0 25.7 205 28-245 177-392 (427)
219 KOG4497 Uncharacterized conser 99.7 1.5E-14 3.2E-19 112.9 19.5 191 55-255 13-242 (447)
220 KOG0771 Prolactin regulatory e 99.7 2.3E-15 4.9E-20 120.9 14.1 189 10-210 148-355 (398)
221 KOG1445 Tumor-specific antigen 99.7 6.5E-15 1.4E-19 124.4 16.9 178 75-256 602-801 (1012)
222 KOG1240 Protein kinase contain 99.7 9.3E-14 2E-18 125.6 24.8 246 3-257 1045-1338(1431)
223 TIGR02800 propeller_TolB tol-p 99.7 1.4E-13 3.1E-18 120.3 25.5 177 75-256 169-357 (417)
224 PF02239 Cytochrom_D1: Cytochr 99.6 1.3E-12 2.8E-17 110.3 28.6 188 19-216 6-209 (369)
225 KOG2111 Uncharacterized conser 99.6 6.7E-13 1.5E-17 103.2 23.8 234 56-344 11-263 (346)
226 PF10282 Lactonase: Lactonase, 99.6 1.3E-11 2.8E-16 104.4 33.4 278 27-347 13-331 (345)
227 KOG1354 Serine/threonine prote 99.6 4.2E-13 9E-18 105.4 22.0 244 6-258 25-364 (433)
228 KOG3881 Uncharacterized conser 99.6 2.3E-13 5E-18 108.5 19.8 244 6-257 55-324 (412)
229 KOG1517 Guanine nucleotide bin 99.6 1.5E-13 3.2E-18 122.7 19.6 244 4-256 1107-1384(1387)
230 TIGR02800 propeller_TolB tol-p 99.6 1.4E-12 3E-17 114.1 25.1 214 28-252 171-396 (417)
231 KOG2315 Predicted translation 99.6 1.1E-12 2.3E-17 109.5 22.2 234 10-256 129-393 (566)
232 PRK04792 tolB translocation pr 99.6 2.5E-12 5.5E-17 112.2 25.7 216 28-253 199-425 (448)
233 KOG2041 WD40 repeat protein [G 99.6 6.6E-13 1.4E-17 114.1 21.2 289 3-339 11-339 (1189)
234 PRK00178 tolB translocation pr 99.6 2.7E-12 5.9E-17 112.4 25.8 215 29-254 181-407 (430)
235 PRK04792 tolB translocation pr 99.6 1.7E-12 3.8E-17 113.2 23.1 216 6-233 217-446 (448)
236 PRK00178 tolB translocation pr 99.6 2.1E-12 4.6E-17 113.0 23.7 218 5-234 197-428 (430)
237 KOG1310 WD40 repeat protein [G 99.6 5.3E-14 1.2E-18 116.9 12.6 205 3-214 47-308 (758)
238 KOG4227 WD40 repeat protein [G 99.6 1.4E-12 3E-17 104.4 20.0 241 1-254 100-388 (609)
239 KOG1310 WD40 repeat protein [G 99.6 1.3E-13 2.9E-18 114.6 14.8 234 90-340 44-306 (758)
240 PRK01029 tolB translocation pr 99.6 6E-12 1.3E-16 109.0 25.6 218 28-256 166-406 (428)
241 KOG2139 WD40 repeat protein [G 99.6 9.5E-13 2.1E-17 104.1 18.3 194 95-337 98-311 (445)
242 PF02239 Cytochrom_D1: Cytochr 99.6 1.2E-11 2.6E-16 104.4 26.4 234 10-256 40-350 (369)
243 KOG2394 WD40 protein DMR-N9 [G 99.6 3.2E-13 6.8E-18 112.1 16.2 194 16-232 183-383 (636)
244 PF10282 Lactonase: Lactonase, 99.5 1.9E-10 4.2E-15 97.3 33.1 240 8-255 38-324 (345)
245 COG5354 Uncharacterized protei 99.5 9.9E-12 2.2E-16 102.7 24.0 291 5-350 31-408 (561)
246 KOG2314 Translation initiation 99.5 1E-11 2.2E-16 103.8 24.1 278 10-338 214-526 (698)
247 KOG0974 WD-repeat protein WDR6 99.5 1.2E-12 2.6E-17 116.7 19.3 194 97-339 89-290 (967)
248 TIGR02658 TTQ_MADH_Hv methylam 99.5 4.6E-10 1E-14 92.8 33.0 265 17-338 11-331 (352)
249 COG2706 3-carboxymuconate cycl 99.5 5.3E-10 1.1E-14 89.2 31.5 276 26-346 15-329 (346)
250 COG2706 3-carboxymuconate cycl 99.5 2.8E-10 6E-15 90.7 29.2 245 5-256 38-324 (346)
251 PF04762 IKI3: IKI3 family; I 99.5 2.5E-10 5.3E-15 107.0 33.7 311 5-339 74-458 (928)
252 PRK01029 tolB translocation pr 99.5 2.1E-11 4.5E-16 105.7 24.6 222 6-235 184-426 (428)
253 KOG0644 Uncharacterized conser 99.5 8.8E-14 1.9E-18 121.1 8.4 229 48-338 188-427 (1113)
254 KOG3881 Uncharacterized conser 99.5 4.9E-12 1.1E-16 101.1 17.0 208 17-234 115-342 (412)
255 KOG1409 Uncharacterized conser 99.5 4E-11 8.7E-16 94.5 20.1 205 48-259 22-276 (404)
256 KOG1240 Protein kinase contain 99.4 3.5E-11 7.7E-16 109.4 22.0 268 41-339 1040-1336(1431)
257 TIGR02658 TTQ_MADH_Hv methylam 99.4 1.5E-09 3.2E-14 89.9 28.6 234 14-257 53-334 (352)
258 PRK04043 tolB translocation pr 99.4 1E-09 2.3E-14 94.6 28.2 174 75-256 168-360 (419)
259 KOG2321 WD40 repeat protein [G 99.4 9.3E-11 2E-15 98.5 20.4 202 48-258 49-263 (703)
260 KOG0280 Uncharacterized conser 99.4 1.4E-10 3.1E-15 89.5 19.5 220 27-256 46-287 (339)
261 KOG2314 Translation initiation 99.4 9.1E-10 2E-14 92.4 25.4 236 7-254 250-526 (698)
262 KOG1334 WD40 repeat protein [G 99.4 1.2E-11 2.5E-16 101.8 13.7 257 48-338 140-425 (559)
263 COG5354 Uncharacterized protei 99.4 7.9E-10 1.7E-14 91.8 23.3 234 11-256 136-398 (561)
264 PF04762 IKI3: IKI3 family; I 99.4 2.9E-09 6.4E-14 99.9 29.6 242 7-256 22-336 (928)
265 KOG4547 WD40 repeat-containing 99.4 1.3E-09 2.7E-14 92.2 24.2 182 63-256 6-223 (541)
266 PRK04043 tolB translocation pr 99.3 3.8E-09 8.2E-14 91.2 27.4 196 51-255 188-402 (419)
267 COG4946 Uncharacterized protei 99.3 3.1E-09 6.8E-14 87.7 24.8 184 59-256 275-480 (668)
268 PLN02919 haloacid dehalogenase 99.3 1.5E-08 3.2E-13 97.1 31.6 240 10-257 571-892 (1057)
269 KOG1409 Uncharacterized conser 99.3 6E-10 1.3E-14 88.0 17.9 196 5-209 67-270 (404)
270 KOG1064 RAVE (regulator of V-A 99.3 5.1E-11 1.1E-15 112.3 12.2 184 51-256 2209-2401(2439)
271 COG4946 Uncharacterized protei 99.2 3.2E-08 7E-13 81.9 26.0 170 17-197 331-507 (668)
272 PLN02919 haloacid dehalogenase 99.2 6.7E-08 1.5E-12 92.7 31.7 246 56-338 573-889 (1057)
273 PF08450 SGL: SMP-30/Gluconola 99.2 5.1E-07 1.1E-11 72.9 32.6 221 56-327 5-245 (246)
274 TIGR03300 assembly_YfgL outer 99.2 8.3E-08 1.8E-12 82.8 29.6 218 18-256 65-300 (377)
275 TIGR03300 assembly_YfgL outer 99.2 3.6E-08 7.9E-13 85.0 27.4 219 17-256 104-341 (377)
276 KOG0974 WD-repeat protein WDR6 99.2 6.1E-10 1.3E-14 99.9 15.7 184 62-257 99-292 (967)
277 COG5170 CDC55 Serine/threonine 99.2 1E-09 2.3E-14 85.6 14.5 293 4-338 24-368 (460)
278 KOG4547 WD40 repeat-containing 99.2 1.9E-08 4.1E-13 85.2 22.5 186 15-210 2-221 (541)
279 KOG4190 Uncharacterized conser 99.2 2.8E-10 6.1E-15 95.6 10.1 205 43-256 729-951 (1034)
280 KOG3914 WD repeat protein WDR4 99.1 2.5E-09 5.5E-14 86.3 13.4 156 100-259 67-229 (390)
281 KOG0280 Uncharacterized conser 99.1 2E-08 4.4E-13 77.9 17.5 176 75-256 45-244 (339)
282 KOG4532 WD40-like repeat conta 99.1 3E-08 6.5E-13 76.0 18.2 228 18-256 84-334 (344)
283 KOG1064 RAVE (regulator of V-A 99.1 7.3E-10 1.6E-14 104.8 11.0 192 5-219 2207-2408(2439)
284 KOG1354 Serine/threonine prote 99.1 3.8E-09 8.2E-14 83.7 13.0 228 3-250 161-431 (433)
285 PF15492 Nbas_N: Neuroblastoma 99.1 4.9E-07 1.1E-11 70.4 24.0 226 11-256 2-262 (282)
286 KOG1920 IkappaB kinase complex 99.0 4.3E-07 9.3E-12 83.8 25.2 238 5-256 67-325 (1265)
287 PF15492 Nbas_N: Neuroblastoma 99.0 1.5E-06 3.3E-11 67.7 24.3 221 101-338 3-260 (282)
288 KOG1912 WD40 repeat protein [G 99.0 4.6E-08 9.9E-13 85.8 17.7 242 4-256 13-307 (1062)
289 PF13360 PQQ_2: PQQ-like domai 99.0 1.1E-06 2.3E-11 70.7 24.9 215 26-256 2-233 (238)
290 PF08450 SGL: SMP-30/Gluconola 99.0 5.6E-06 1.2E-10 66.9 28.5 212 11-241 4-243 (246)
291 KOG4532 WD40-like repeat conta 99.0 4.3E-07 9.2E-12 69.9 19.5 195 112-347 92-292 (344)
292 KOG0882 Cyclophilin-related pe 99.0 1.6E-08 3.6E-13 82.9 12.4 243 5-258 8-310 (558)
293 KOG0309 Conserved WD40 repeat- 99.0 1.2E-08 2.5E-13 88.9 12.1 289 6-339 24-341 (1081)
294 PF13360 PQQ_2: PQQ-like domai 99.0 4.2E-06 9.1E-11 67.3 26.6 211 75-338 2-231 (238)
295 KOG4649 PQQ (pyrrolo-quinoline 98.9 7E-06 1.5E-10 63.3 24.7 127 18-153 23-154 (354)
296 PRK11138 outer membrane biogen 98.9 2.5E-06 5.4E-11 74.0 25.9 224 18-256 69-315 (394)
297 PF07433 DUF1513: Protein of u 98.9 6.3E-06 1.4E-10 66.3 25.6 196 56-256 10-250 (305)
298 PF07433 DUF1513: Protein of u 98.9 8.5E-06 1.8E-10 65.6 25.6 234 6-254 4-284 (305)
299 PF04841 Vps16_N: Vps16, N-ter 98.9 1.2E-05 2.7E-10 69.4 28.7 224 11-251 33-285 (410)
300 KOG1912 WD40 repeat protein [G 98.9 4E-07 8.6E-12 80.1 19.4 284 4-338 53-552 (1062)
301 KOG4714 Nucleoporin [Nuclear s 98.9 9.1E-08 2E-12 73.1 13.5 189 50-251 89-316 (319)
302 KOG4190 Uncharacterized conser 98.9 1.4E-08 3.1E-13 85.6 9.4 233 4-252 733-987 (1034)
303 PF00400 WD40: WD domain, G-be 98.9 1E-08 2.3E-13 56.3 5.9 39 211-251 1-39 (39)
304 PRK11138 outer membrane biogen 98.8 9.8E-06 2.1E-10 70.3 26.6 218 18-256 120-356 (394)
305 PF00400 WD40: WD domain, G-be 98.8 1.1E-08 2.4E-13 56.1 5.5 38 169-207 2-39 (39)
306 KOG2041 WD40 repeat protein [G 98.8 4.9E-07 1.1E-11 78.9 17.7 223 4-239 69-324 (1189)
307 KOG4714 Nucleoporin [Nuclear s 98.8 4E-07 8.7E-12 69.7 14.0 73 180-254 181-255 (319)
308 PF06433 Me-amine-dh_H: Methyl 98.8 4.4E-05 9.5E-10 62.4 26.4 239 10-256 39-323 (342)
309 KOG2695 WD40 repeat protein [G 98.8 8.8E-08 1.9E-12 76.2 10.7 169 139-356 216-392 (425)
310 PF04053 Coatomer_WDAD: Coatom 98.8 5.5E-06 1.2E-10 71.6 22.4 217 7-254 33-263 (443)
311 KOG1920 IkappaB kinase complex 98.8 5E-06 1.1E-10 77.0 22.6 232 5-255 108-367 (1265)
312 KOG0882 Cyclophilin-related pe 98.7 4.8E-07 1E-11 74.6 14.1 278 49-347 8-312 (558)
313 KOG1275 PAB-dependent poly(A) 98.7 1.6E-07 3.5E-12 83.9 11.6 174 112-335 155-340 (1118)
314 KOG3914 WD repeat protein WDR4 98.7 6E-07 1.3E-11 72.9 13.6 157 9-172 65-229 (390)
315 COG0823 TolB Periplasmic compo 98.7 2.4E-06 5.2E-11 73.6 16.9 188 51-245 193-391 (425)
316 KOG2114 Vacuolar assembly/sort 98.6 1.4E-05 3E-10 71.6 20.8 197 13-218 30-252 (933)
317 PRK02888 nitrous-oxide reducta 98.6 7.1E-05 1.5E-09 66.2 24.0 185 112-338 213-405 (635)
318 KOG1832 HIV-1 Vpr-binding prot 98.6 4.6E-08 9.9E-13 87.2 4.5 210 4-240 1099-1318(1516)
319 KOG2695 WD40 repeat protein [G 98.6 4.1E-07 8.9E-12 72.5 9.2 138 112-256 232-379 (425)
320 PF03178 CPSF_A: CPSF A subuni 98.6 0.00026 5.7E-09 59.6 26.5 173 76-255 2-204 (321)
321 PF11768 DUF3312: Protein of u 98.6 7.5E-06 1.6E-10 70.4 16.4 76 176-256 257-332 (545)
322 COG3386 Gluconolactonase [Carb 98.5 0.00038 8.3E-09 57.4 26.1 221 60-328 34-276 (307)
323 PF14583 Pectate_lyase22: Olig 98.5 0.00044 9.5E-09 57.8 28.4 219 13-244 42-303 (386)
324 KOG0309 Conserved WD40 repeat- 98.5 1.5E-06 3.1E-11 76.3 10.8 198 50-258 24-237 (1081)
325 KOG2066 Vacuolar assembly/sort 98.5 7E-06 1.5E-10 72.9 14.8 143 151-351 52-199 (846)
326 KOG3617 WD40 and TPR repeat-co 98.5 1.1E-05 2.4E-10 72.2 15.3 113 51-167 16-131 (1416)
327 PF00930 DPPIV_N: Dipeptidyl p 98.4 0.00014 2.9E-09 62.2 21.5 220 15-256 1-269 (353)
328 KOG1275 PAB-dependent poly(A) 98.4 1E-05 2.2E-10 72.9 14.6 178 17-207 146-340 (1118)
329 PF03178 CPSF_A: CPSF A subuni 98.4 0.00043 9.4E-09 58.3 24.2 214 27-250 2-262 (321)
330 PRK02888 nitrous-oxide reducta 98.4 7.6E-05 1.7E-09 66.0 19.8 167 74-254 213-405 (635)
331 KOG2066 Vacuolar assembly/sort 98.4 1E-05 2.2E-10 71.9 14.4 145 96-257 40-191 (846)
332 KOG2114 Vacuolar assembly/sort 98.4 0.0001 2.2E-09 66.3 20.4 190 54-256 27-246 (933)
333 COG5170 CDC55 Serine/threonine 98.4 7.8E-06 1.7E-10 64.5 11.2 159 94-256 171-370 (460)
334 COG0823 TolB Periplasmic compo 98.3 7.9E-05 1.7E-09 64.4 17.9 184 6-199 192-390 (425)
335 cd00216 PQQ_DH Dehydrogenases 98.3 0.0024 5.2E-08 57.1 27.5 109 19-132 62-193 (488)
336 PF00930 DPPIV_N: Dipeptidyl p 98.3 0.00054 1.2E-08 58.5 21.9 168 75-256 22-221 (353)
337 COG3391 Uncharacterized conser 98.3 0.0016 3.5E-08 56.2 24.7 218 10-234 77-309 (381)
338 KOG3621 WD40 repeat-containing 98.3 1.3E-05 2.8E-10 70.2 11.6 121 180-338 35-155 (726)
339 KOG1645 RING-finger-containing 98.2 0.00013 2.7E-09 60.0 15.2 238 4-254 191-462 (463)
340 PF02897 Peptidase_S9_N: Proly 98.2 0.0033 7.2E-08 55.2 27.7 243 8-256 125-407 (414)
341 KOG3617 WD40 and TPR repeat-co 98.2 2.3E-05 4.9E-10 70.3 11.6 115 138-256 19-134 (1416)
342 PF00780 CNH: CNH domain; Int 98.2 0.0019 4.1E-08 53.2 22.6 197 6-219 35-265 (275)
343 COG3386 Gluconolactonase [Carb 98.2 0.0022 4.7E-08 53.0 22.4 212 13-242 31-274 (307)
344 PF11768 DUF3312: Protein of u 98.2 0.00021 4.6E-09 61.8 16.2 76 133-213 258-333 (545)
345 PF04841 Vps16_N: Vps16, N-ter 98.2 0.0041 8.9E-08 54.1 26.5 168 77-256 62-249 (410)
346 PF04053 Coatomer_WDAD: Coatom 98.1 0.0056 1.2E-07 53.4 24.1 214 51-338 33-263 (443)
347 KOG4649 PQQ (pyrrolo-quinoline 98.1 0.0028 6E-08 49.4 21.0 68 18-93 63-132 (354)
348 KOG1832 HIV-1 Vpr-binding prot 98.1 3.9E-06 8.4E-11 75.4 4.2 184 48-256 1099-1294(1516)
349 cd00216 PQQ_DH Dehydrogenases 98.1 0.0082 1.8E-07 53.7 26.7 227 19-256 111-427 (488)
350 PF06433 Me-amine-dh_H: Methyl 98.0 0.0047 1E-07 50.8 24.0 173 27-212 17-216 (342)
351 PF08553 VID27: VID27 cytoplas 98.0 0.0017 3.6E-08 60.0 19.1 133 112-253 502-647 (794)
352 PF14783 BBS2_Mid: Ciliary BBS 98.0 0.0015 3.4E-08 44.0 14.1 67 181-254 2-72 (111)
353 KOG1645 RING-finger-containing 98.0 0.00015 3.3E-09 59.5 11.0 90 164-257 179-270 (463)
354 KOG1008 Uncharacterized conser 97.9 5.1E-06 1.1E-10 71.9 1.2 200 50-256 56-278 (783)
355 PRK13616 lipoprotein LpqB; Pro 97.8 0.0034 7.4E-08 57.0 18.9 134 112-253 327-476 (591)
356 COG3391 Uncharacterized conser 97.8 0.016 3.5E-07 50.0 27.7 236 9-256 33-286 (381)
357 KOG3621 WD40 repeat-containing 97.8 9E-05 2E-09 65.2 8.2 115 136-254 35-155 (726)
358 KOG4640 Anaphase-promoting com 97.8 0.00014 3.1E-09 63.2 8.9 93 136-233 22-115 (665)
359 smart00320 WD40 WD40 repeats. 97.8 0.00011 2.4E-09 39.3 5.7 38 212-251 3-40 (40)
360 PF08553 VID27: VID27 cytoplas 97.8 0.0048 1E-07 57.1 18.8 129 74-208 502-646 (794)
361 TIGR03075 PQQ_enz_alc_DH PQQ-d 97.8 0.027 5.9E-07 50.8 30.3 188 19-214 70-338 (527)
362 PF02897 Peptidase_S9_N: Proly 97.8 0.024 5.2E-07 49.8 26.0 195 55-253 128-357 (414)
363 PF08596 Lgl_C: Lethal giant l 97.8 0.022 4.7E-07 49.1 22.5 235 8-256 3-293 (395)
364 PF06977 SdiA-regulated: SdiA- 97.7 0.014 3E-07 46.6 22.3 193 48-250 19-247 (248)
365 PF05694 SBP56: 56kDa selenium 97.7 0.022 4.7E-07 48.6 22.8 235 7-242 65-392 (461)
366 smart00320 WD40 WD40 repeats. 97.7 0.00011 2.4E-09 39.3 5.0 38 169-207 3-40 (40)
367 PF14783 BBS2_Mid: Ciliary BBS 97.7 0.006 1.3E-07 41.3 13.0 84 74-162 23-109 (111)
368 KOG4640 Anaphase-promoting com 97.6 0.00041 8.8E-09 60.5 8.4 78 179-260 21-99 (665)
369 TIGR03075 PQQ_enz_alc_DH PQQ-d 97.5 0.064 1.4E-06 48.5 24.2 233 19-257 121-494 (527)
370 PF10647 Gmad1: Lipoprotein Lp 97.5 0.039 8.4E-07 44.7 19.2 118 136-256 25-147 (253)
371 KOG2079 Vacuolar assembly/sort 97.4 0.00081 1.7E-08 62.4 8.5 100 151-254 102-204 (1206)
372 KOG2395 Protein involved in va 97.4 0.0043 9.3E-08 53.4 11.8 137 112-254 354-501 (644)
373 KOG2395 Protein involved in va 97.4 0.0094 2E-07 51.4 13.8 138 65-208 347-499 (644)
374 PRK13616 lipoprotein LpqB; Pro 97.3 0.053 1.1E-06 49.5 19.1 185 7-201 350-561 (591)
375 PF00780 CNH: CNH domain; Int 97.3 0.078 1.7E-06 43.6 25.1 214 16-256 5-258 (275)
376 PF12894 Apc4_WD40: Anaphase-p 97.2 0.0018 3.8E-08 36.5 5.2 31 5-35 10-41 (47)
377 PF06977 SdiA-regulated: SdiA- 97.1 0.094 2E-06 42.0 23.8 189 7-206 22-247 (248)
378 COG3490 Uncharacterized protei 97.1 0.1 2.2E-06 41.7 18.7 157 84-242 56-244 (366)
379 PF12894 Apc4_WD40: Anaphase-p 97.1 0.0026 5.5E-08 35.8 5.2 31 223-253 11-41 (47)
380 PF14655 RAB3GAP2_N: Rab3 GTPa 96.9 0.24 5.1E-06 42.9 27.7 77 178-256 307-401 (415)
381 KOG1008 Uncharacterized conser 96.9 0.00024 5.2E-09 62.0 0.1 159 4-167 100-275 (783)
382 PF08596 Lgl_C: Lethal giant l 96.8 0.033 7.2E-07 48.0 12.5 82 170-253 78-173 (395)
383 KOG1897 Damage-specific DNA bi 96.8 0.5 1.1E-05 44.6 27.3 228 19-256 685-945 (1096)
384 PRK10115 protease 2; Provision 96.8 0.5 1.1E-05 44.4 29.3 238 8-256 128-397 (686)
385 COG3823 Glutamine cyclotransfe 96.8 0.1 2.2E-06 39.7 12.7 100 17-123 55-159 (262)
386 PF05096 Glu_cyclase_2: Glutam 96.7 0.22 4.8E-06 39.9 22.5 178 9-197 47-249 (264)
387 KOG2079 Vacuolar assembly/sort 96.6 0.016 3.4E-07 54.4 9.1 67 189-257 98-164 (1206)
388 KOG4499 Ca2+-binding protein R 96.6 0.25 5.5E-06 38.4 19.9 192 26-232 36-262 (310)
389 KOG2444 WD40 repeat protein [G 96.5 0.0099 2.1E-07 45.6 6.2 103 151-257 73-181 (238)
390 PF14870 PSII_BNR: Photosynthe 96.5 0.4 8.6E-06 39.7 28.5 236 4-256 14-263 (302)
391 PF14583 Pectate_lyase22: Olig 96.3 0.55 1.2E-05 39.9 25.3 198 57-256 42-275 (386)
392 KOG1897 Damage-specific DNA bi 96.3 0.99 2.2E-05 42.7 27.1 279 6-341 583-902 (1096)
393 PF05096 Glu_cyclase_2: Glutam 96.2 0.48 1E-05 38.0 23.0 184 49-241 41-249 (264)
394 COG3490 Uncharacterized protei 96.1 0.6 1.3E-05 37.6 19.8 223 9-252 70-347 (366)
395 PF12234 Rav1p_C: RAVE protein 96.0 0.36 7.8E-06 44.0 14.4 74 178-253 29-104 (631)
396 KOG1916 Nuclear protein, conta 95.8 0.02 4.3E-07 52.8 5.5 141 75-219 110-280 (1283)
397 COG5167 VID27 Protein involved 95.7 0.42 9E-06 41.7 12.6 143 105-256 477-635 (776)
398 TIGR03074 PQQ_membr_DH membran 95.6 2.2 4.7E-05 40.6 22.5 111 18-132 194-354 (764)
399 COG3204 Uncharacterized protei 95.6 0.54 1.2E-05 38.0 12.1 80 175-256 82-161 (316)
400 PF15390 DUF4613: Domain of un 95.6 0.83 1.8E-05 40.7 14.1 147 96-255 20-188 (671)
401 PF12234 Rav1p_C: RAVE protein 95.5 0.5 1.1E-05 43.2 13.2 104 12-121 35-155 (631)
402 PF10313 DUF2415: Uncharacteri 95.4 0.079 1.7E-06 28.9 4.9 32 224-255 1-35 (43)
403 PF10168 Nup88: Nuclear pore c 95.4 1.1 2.4E-05 42.1 15.3 92 224-338 85-180 (717)
404 KOG2280 Vacuolar assembly/sort 95.2 2.6 5.6E-05 38.9 18.3 208 13-233 39-269 (829)
405 PF10313 DUF2415: Uncharacteri 95.2 0.11 2.4E-06 28.4 5.0 32 179-211 1-35 (43)
406 PF12657 TFIIIC_delta: Transcr 95.0 0.49 1.1E-05 35.8 10.2 31 308-338 86-122 (173)
407 KOG1898 Splicing factor 3b, su 95.0 3.7 7.9E-05 39.5 17.4 182 116-341 855-1052(1205)
408 PF10168 Nup88: Nuclear pore c 94.8 0.64 1.4E-05 43.6 12.2 76 179-256 85-182 (717)
409 PRK10115 protease 2; Provision 94.8 3.7 8E-05 38.8 29.7 198 53-253 129-344 (686)
410 PF07569 Hira: TUP1-like enhan 94.8 0.3 6.6E-06 38.4 8.7 69 186-256 18-98 (219)
411 PF14870 PSII_BNR: Photosynthe 94.8 2.1 4.4E-05 35.6 24.2 146 97-251 63-213 (302)
412 KOG2444 WD40 repeat protein [G 94.6 0.14 2.9E-06 39.6 6.2 97 18-121 70-176 (238)
413 PHA02713 hypothetical protein; 94.6 3.7 8E-05 37.8 19.0 21 318-338 512-534 (557)
414 TIGR03118 PEPCTERM_chp_1 conse 94.5 2.2 4.8E-05 35.0 21.4 215 9-256 25-282 (336)
415 KOG2377 Uncharacterized conser 94.5 1.3 2.9E-05 38.2 12.1 139 11-153 27-172 (657)
416 PF07569 Hira: TUP1-like enhan 94.5 0.34 7.3E-06 38.2 8.3 61 58-122 18-95 (219)
417 PF08728 CRT10: CRT10; InterP 94.5 3 6.5E-05 38.8 15.1 75 178-253 163-246 (717)
418 KOG4499 Ca2+-binding protein R 94.4 2 4.3E-05 33.7 12.9 88 54-144 161-263 (310)
419 PF10647 Gmad1: Lipoprotein Lp 94.1 2.7 5.8E-05 34.1 20.3 147 52-201 25-188 (253)
420 COG3823 Glutamine cyclotransfe 94.0 2.2 4.7E-05 32.8 14.0 171 60-241 53-247 (262)
421 PF05694 SBP56: 56kDa selenium 94.0 3.8 8.3E-05 35.6 29.8 181 74-257 96-346 (461)
422 KOG2280 Vacuolar assembly/sort 93.8 3.8 8.2E-05 37.9 14.1 172 76-258 64-251 (829)
423 KOG2247 WD40 repeat-containing 93.2 0.014 3.1E-07 49.9 -1.4 135 56-200 40-180 (615)
424 PHA02713 hypothetical protein; 93.1 7.1 0.00015 36.0 20.6 64 188-256 462-536 (557)
425 TIGR02604 Piru_Ver_Nterm putat 93.1 5.4 0.00012 34.5 16.1 62 179-244 124-204 (367)
426 COG4880 Secreted protein conta 93.0 4.5 9.7E-05 34.8 12.5 86 76-163 406-497 (603)
427 PF07995 GSDH: Glucose / Sorbo 92.7 5.6 0.00012 33.8 13.7 52 180-234 3-59 (331)
428 PF14727 PHTB1_N: PTHB1 N-term 92.7 6.4 0.00014 34.5 26.8 139 64-208 39-203 (418)
429 KOG3630 Nuclear pore complex, 92.5 0.79 1.7E-05 44.1 8.3 140 96-240 101-260 (1405)
430 COG3204 Uncharacterized protei 92.5 5.1 0.00011 32.7 20.4 160 48-216 83-269 (316)
431 KOG4460 Nuclear pore complex, 92.4 6.1 0.00013 35.1 12.8 93 225-339 105-200 (741)
432 PF07676 PD40: WD40-like Beta 92.3 0.55 1.2E-05 25.0 4.6 28 5-32 7-38 (39)
433 KOG4441 Proteins containing BT 92.2 9.5 0.00021 35.2 19.3 176 76-256 301-502 (571)
434 TIGR02276 beta_rpt_yvtn 40-res 92.2 1.1 2.3E-05 24.2 6.3 32 188-220 1-33 (42)
435 PF14761 HPS3_N: Hermansky-Pud 92.0 4.7 0.0001 31.3 13.2 48 192-243 30-79 (215)
436 KOG1900 Nuclear pore complex, 91.9 8.1 0.00018 38.3 14.2 152 99-256 82-275 (1311)
437 PF15390 DUF4613: Domain of un 91.7 9.8 0.00021 34.4 26.2 146 7-170 20-189 (671)
438 COG1770 PtrB Protease II [Amin 91.6 11 0.00024 34.7 23.0 239 8-256 130-399 (682)
439 PF08801 Nucleoporin_N: Nup133 91.6 9.3 0.0002 33.8 14.4 31 224-254 190-220 (422)
440 PF12657 TFIIIC_delta: Transcr 91.5 2.1 4.7E-05 32.3 8.6 30 179-209 86-121 (173)
441 KOG2377 Uncharacterized conser 91.5 2.1 4.7E-05 37.0 9.1 100 5-111 65-169 (657)
442 TIGR03606 non_repeat_PQQ dehyd 90.9 11 0.00024 33.4 15.4 57 178-235 29-90 (454)
443 KOG4441 Proteins containing BT 90.7 14 0.0003 34.2 21.1 230 15-256 282-549 (571)
444 PF10395 Utp8: Utp8 family; I 90.5 15 0.00032 34.2 16.8 157 6-166 129-304 (670)
445 KOG1900 Nuclear pore complex, 90.4 5.7 0.00012 39.3 11.8 165 157-345 97-280 (1311)
446 KOG3630 Nuclear pore complex, 89.8 5 0.00011 39.1 10.7 132 58-195 108-260 (1405)
447 PF07676 PD40: WD40-like Beta 89.5 1.8 4E-05 22.9 5.0 32 174-206 4-38 (39)
448 COG4590 ABC-type uncharacteriz 89.3 3.2 7E-05 36.0 8.4 163 126-339 212-388 (733)
449 PF14655 RAB3GAP2_N: Rab3 GTPa 89.2 7 0.00015 34.2 10.7 35 5-39 306-341 (415)
450 PF03022 MRJP: Major royal jel 89.2 12 0.00025 31.1 17.0 151 76-255 34-217 (287)
451 PF11715 Nup160: Nucleoporin N 89.2 2.4 5.3E-05 38.9 8.5 33 225-257 216-252 (547)
452 PF03088 Str_synth: Strictosid 89.1 4.7 0.0001 26.5 7.4 41 197-241 34-74 (89)
453 PF14781 BBS2_N: Ciliary BBSom 88.8 6.7 0.00014 27.9 12.9 111 10-128 2-131 (136)
454 COG5276 Uncharacterized conser 88.5 12 0.00027 30.6 23.2 224 15-253 135-369 (370)
455 TIGR02604 Piru_Ver_Nterm putat 88.5 16 0.00034 31.7 16.3 68 172-243 65-143 (367)
456 KOG1983 Tomosyn and related SN 88.2 24 0.00052 35.1 14.6 30 7-36 36-66 (993)
457 PF07995 GSDH: Glucose / Sorbo 88.1 15 0.00033 31.2 25.6 69 179-248 253-330 (331)
458 COG5290 IkappaB kinase complex 87.9 23 0.0005 33.5 13.1 74 179-255 247-326 (1243)
459 PF10214 Rrn6: RNA polymerase 87.7 28 0.0006 33.7 18.1 113 6-123 145-277 (765)
460 PF08728 CRT10: CRT10; InterP 87.3 13 0.00027 35.0 11.5 63 189-255 113-197 (717)
461 COG3292 Predicted periplasmic 87.3 22 0.00049 32.1 16.2 236 5-254 163-405 (671)
462 COG5167 VID27 Protein involved 87.2 21 0.00046 31.8 18.3 149 100-256 423-594 (776)
463 COG4590 ABC-type uncharacteriz 87.0 6.3 0.00014 34.3 8.7 157 94-258 219-391 (733)
464 PF14761 HPS3_N: Hermansky-Pud 86.9 13 0.00028 29.0 16.4 45 63-111 29-75 (215)
465 PF11715 Nup160: Nucleoporin N 86.7 5 0.00011 36.9 9.0 74 16-93 156-257 (547)
466 PF05935 Arylsulfotrans: Aryls 86.5 25 0.00053 31.8 17.0 136 113-256 127-304 (477)
467 COG5290 IkappaB kinase complex 85.8 17 0.00036 34.4 11.1 103 51-153 247-355 (1243)
468 PF03022 MRJP: Major royal jel 84.9 21 0.00046 29.6 19.5 211 8-241 2-253 (287)
469 PRK13684 Ycf48-like protein; P 84.4 25 0.00054 30.0 29.2 113 136-256 174-290 (334)
470 KOG4460 Nuclear pore complex, 84.2 12 0.00025 33.4 9.1 76 180-257 105-202 (741)
471 PF14727 PHTB1_N: PTHB1 N-term 84.1 29 0.00063 30.6 26.8 62 192-256 302-363 (418)
472 PF14781 BBS2_N: Ciliary BBSom 84.0 13 0.00028 26.5 8.4 74 7-88 48-129 (136)
473 PF14269 Arylsulfotran_2: Aryl 83.7 25 0.00054 29.4 14.2 72 180-253 145-220 (299)
474 KOG1898 Splicing factor 3b, su 83.6 47 0.001 32.6 16.8 176 28-208 854-1047(1205)
475 PF12341 DUF3639: Protein of u 83.3 3.7 8.1E-05 19.9 3.4 25 309-335 3-27 (27)
476 TIGR02171 Fb_sc_TIGR02171 Fibr 83.0 8.4 0.00018 36.9 8.4 77 159-237 329-412 (912)
477 PF01436 NHL: NHL repeat; Int 82.2 4.4 9.5E-05 19.7 4.2 26 225-250 3-28 (28)
478 PF12768 Rax2: Cortical protei 82.0 27 0.00058 28.9 10.2 52 203-256 18-75 (281)
479 PF08801 Nucleoporin_N: Nup133 81.5 38 0.00082 30.0 13.3 30 309-338 191-220 (422)
480 PF01731 Arylesterase: Arylest 81.3 4 8.7E-05 26.6 4.2 29 310-338 56-85 (86)
481 PF10214 Rrn6: RNA polymerase 81.0 56 0.0012 31.7 19.4 78 178-257 145-236 (765)
482 TIGR02276 beta_rpt_yvtn 40-res 80.3 7 0.00015 20.8 5.9 40 61-103 2-41 (42)
483 KOG1916 Nuclear protein, conta 79.2 1.4 3E-05 41.5 2.1 130 174-338 128-266 (1283)
484 smart00564 PQQ beta-propeller 79.1 6.1 0.00013 19.8 3.8 25 192-217 8-32 (33)
485 KOG2247 WD40 repeat-containing 78.3 0.36 7.7E-06 41.9 -1.6 143 99-249 38-184 (615)
486 PF14157 YmzC: YmzC-like prote 77.8 7.9 0.00017 23.1 4.2 29 319-348 29-57 (63)
487 COG5276 Uncharacterized conser 77.6 39 0.00085 27.9 26.4 185 11-210 91-286 (370)
488 PF03088 Str_synth: Strictosid 77.2 18 0.00039 23.8 7.6 38 74-111 35-72 (89)
489 PHA03098 kelch-like protein; P 77.0 61 0.0013 29.8 20.2 24 189-213 487-515 (534)
490 PF09826 Beta_propel: Beta pro 75.6 66 0.0014 29.5 22.9 169 74-255 302-520 (521)
491 PF02333 Phytase: Phytase; In 75.4 54 0.0012 28.4 19.6 146 156-341 75-241 (381)
492 KOG3611 Semaphorins [Signal tr 75.2 48 0.001 31.7 10.8 72 178-249 407-489 (737)
493 TIGR02608 delta_60_rpt delta-6 75.1 13 0.00028 21.8 4.7 30 310-339 3-37 (55)
494 KOG3616 Selective LIM binding 74.3 8.3 0.00018 35.9 5.5 99 208-359 2-100 (1636)
495 PF12768 Rax2: Cortical protei 74.2 49 0.0011 27.4 11.4 88 75-163 15-117 (281)
496 PF07250 Glyoxal_oxid_N: Glyox 73.7 46 0.00099 26.8 11.0 135 118-256 50-200 (243)
497 COG4247 Phy 3-phytase (myo-ino 73.3 47 0.001 26.8 12.7 70 181-256 58-135 (364)
498 PF09826 Beta_propel: Beta pro 72.2 80 0.0017 29.0 26.2 52 306-357 324-379 (521)
499 PF01731 Arylesterase: Arylest 72.2 8.6 0.00019 25.0 3.9 27 9-35 56-84 (86)
500 TIGR02171 Fb_sc_TIGR02171 Fibr 71.5 36 0.00077 33.0 9.0 87 64-153 320-417 (912)
No 1
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=3e-48 Score=302.75 Aligned_cols=276 Identities=14% Similarity=0.223 Sum_probs=238.3
Q ss_pred CCCCceEEEEEccCCCEEEEec-CCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEE
Q 018248 4 PDPITIHHLALNQDHGCFATGT-ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWD 82 (359)
Q Consensus 4 ~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd 82 (359)
.|.++|.|++|+|+|+.|++|+ |.++|+||+++.... .+.. +|..-|.+++|+|++..++..+ .||.|++||
T Consensus 113 GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~--~t~K-gH~~WVlcvawsPDgk~iASG~----~dg~I~lwd 185 (480)
T KOG0271|consen 113 GHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPL--FTCK-GHKNWVLCVAWSPDGKKIASGS----KDGSIRLWD 185 (480)
T ss_pred CCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcc--eeec-CCccEEEEEEECCCcchhhccc----cCCeEEEec
Confidence 5899999999999999999999 999999999986655 3444 8999999999999999988777 799999999
Q ss_pred CCCccEEee-ec-cCcceeEEEEec-----ceeEEE---ecCeEEEEEcccceeeeeEeccCCCceeeeeecCCCccEEE
Q 018248 83 DHENRYLGE-LS-FRSEVKNVRLRR-----DRIVVV---LNQKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAGPMVMA 152 (359)
Q Consensus 83 ~~~~~~~~~-~~-~~~~v~~~~~~~-----~~~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 152 (359)
.++|+++.. +. |...|++++|.| ....++ .||.|+|||+..++++..+.+|..+++++.|-- ++ ++
T Consensus 186 pktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG--~g--li 261 (480)
T KOG0271|consen 186 PKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGG--EG--LI 261 (480)
T ss_pred CCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcC--Cc--eE
Confidence 999877654 55 999999999976 455666 899999999999999999999999998887753 33 45
Q ss_pred ecCCCCeeEEEEecCC----------------------------------------------------------------
Q 018248 153 CPGLLKGQVRVEDYGT---------------------------------------------------------------- 168 (359)
Q Consensus 153 ~~g~~d~~v~~~~~~~---------------------------------------------------------------- 168 (359)
++|+.|++|++|....
T Consensus 262 ySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVS 341 (480)
T KOG0271|consen 262 YSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVS 341 (480)
T ss_pred EecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEE
Confidence 5588899999986541
Q ss_pred ----------------eeeEEeecccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcEEEEeecCCCCcceEEEEec
Q 018248 169 ----------------KKSKYITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFS 232 (359)
Q Consensus 169 ----------------~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s 232 (359)
+++..+.+|...|+.+.||||++++|+++.|.. |++||.++|+.+..|++ |-+.|+.++|+
T Consensus 342 gsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkS-VkLW~g~tGk~lasfRG--Hv~~VYqvaws 418 (480)
T KOG0271|consen 342 GSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKS-VKLWDGRTGKFLASFRG--HVAAVYQVAWS 418 (480)
T ss_pred ecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccc-eeeeeCCCcchhhhhhh--ccceeEEEEec
Confidence 122345578889999999999999999999999 99999999999999998 77899999999
Q ss_pred CCCCEEEEEcCCCcEEEEEccCCCCCCCCCccccCCCCCccCCCCCceeeeeEeeeecceEEecccceeEEeecCCcEEE
Q 018248 233 SNAQWLAASSDKGTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSAISSFRFIRGVLPKYFSSKWSMAQFRLPENVQYL 312 (359)
Q Consensus 233 ~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 312 (359)
.|.++|++|+.|.++++|++++.+.. .+ +..|.+.|.+
T Consensus 419 aDsRLlVS~SkDsTLKvw~V~tkKl~-------------------------------------~D-----LpGh~DEVf~ 456 (480)
T KOG0271|consen 419 ADSRLLVSGSKDSTLKVWDVRTKKLK-------------------------------------QD-----LPGHADEVFA 456 (480)
T ss_pred cCccEEEEcCCCceEEEEEeeeeeec-------------------------------------cc-----CCCCCceEEE
Confidence 99999999999999999999997722 11 3345689999
Q ss_pred eeecccCCEEEEEecCCeEEEEE
Q 018248 313 VGFGRQNNTIVIVGLDGSYYKCE 335 (359)
Q Consensus 313 ~~~s~~~~~l~~~~~dg~i~v~~ 335 (359)
+.|+|||..+++|+.|..+++|.
T Consensus 457 vDwspDG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 457 VDWSPDGQRVASGGKDKVLRLWR 479 (480)
T ss_pred EEecCCCceeecCCCceEEEeec
Confidence 99999999999999999999994
No 2
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=1.4e-45 Score=291.10 Aligned_cols=278 Identities=15% Similarity=0.171 Sum_probs=249.2
Q ss_pred CCCceEEEEEccCCCEEEEec-CCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEEC
Q 018248 5 DPITIHHLALNQDHGCFATGT-ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDD 83 (359)
Q Consensus 5 h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~ 83 (359)
...+|..+.|++|++.|++|+ +|.+++|+....... ..|. ||...+..+.|+|..+.+.+++++ .||++++|++
T Consensus 174 d~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~--~~l~-gH~~~v~~~~fhP~~~~~~lat~s--~Dgtvklw~~ 248 (459)
T KOG0272|consen 174 DTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLL--QTLR-GHTSRVGAAVFHPVDSDLNLATAS--ADGTVKLWKL 248 (459)
T ss_pred CCCcceeeEeecCCCeEEEeecCCceeEeecCCccee--EEEe-ccccceeeEEEccCCCccceeeec--cCCceeeecc
Confidence 468899999999999999999 999999999876444 6666 999999999999985333333333 7999999999
Q ss_pred CCccEEeeec-cCcceeEEEEecceeEEE---ecCeEEEEEcccceeeeeEeccCCCceeeeeecCCCccEEEecCCCCe
Q 018248 84 HENRYLGELS-FRSEVKNVRLRRDRIVVV---LNQKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAGPMVMACPGLLKG 159 (359)
Q Consensus 84 ~~~~~~~~~~-~~~~v~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~ 159 (359)
.+..++..+. |...|..++|+|+|++++ .|.+-++||+++++.+...++|...+..++|.++|. |+++|+.|.
T Consensus 249 ~~e~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGS---L~~tGGlD~ 325 (459)
T KOG0272|consen 249 SQETPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGS---LAATGGLDS 325 (459)
T ss_pred CCCcchhhhhcchhhheeeeecCCCceeeecccccchhhcccccchhhHhhcccccccceeEecCCCc---eeeccCccc
Confidence 9999999998 999999999999999999 899999999999999999999999999999999987 555588999
Q ss_pred eEEEEecC-CeeeEEeecccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcEEEEeecCCCCcceEEEEecC-CCCE
Q 018248 160 QVRVEDYG-TKKSKYITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSS-NAQW 237 (359)
Q Consensus 160 ~v~~~~~~-~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~-~~~~ 237 (359)
.-+||+.+ +.++..+.+|..+|.+++|+|+|..||||+.|++ ++|||++..+.+.++.. |..-|+.+.|+| .|.+
T Consensus 326 ~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt-~kVWDLR~r~~ly~ipA--H~nlVS~Vk~~p~~g~f 402 (459)
T KOG0272|consen 326 LGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNT-CKVWDLRMRSELYTIPA--HSNLVSQVKYSPQEGYF 402 (459)
T ss_pred hhheeecccCcEEEEecccccceeeEeECCCceEEeecCCCCc-EEEeeecccccceeccc--ccchhhheEecccCCeE
Confidence 99998765 5889999999999999999999999999999999 99999999999999987 788999999998 7889
Q ss_pred EEEEcCCCcEEEEEccCCCCCCCCCccccCCCCCccCCCCCceeeeeEeeeecceEEecccceeEEeecCCcEEEeeecc
Q 018248 238 LAASSDKGTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSAISSFRFIRGVLPKYFSSKWSMAQFRLPENVQYLVGFGR 317 (359)
Q Consensus 238 l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 317 (359)
|+|++.|++++||...+..+.. .+..|.+.|.++..++
T Consensus 403 L~TasyD~t~kiWs~~~~~~~k------------------------------------------sLaGHe~kV~s~Dis~ 440 (459)
T KOG0272|consen 403 LVTASYDNTVKIWSTRTWSPLK------------------------------------------SLAGHEGKVISLDISP 440 (459)
T ss_pred EEEcccCcceeeecCCCcccch------------------------------------------hhcCCccceEEEEecc
Confidence 9999999999999998876431 2556788999999999
Q ss_pred cCCEEEEEecCCeEEEEE
Q 018248 318 QNNTIVIVGLDGSYYKCE 335 (359)
Q Consensus 318 ~~~~l~~~~~dg~i~v~~ 335 (359)
|++.|++++.|.++++|.
T Consensus 441 d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 441 DSQAIATSSFDRTIKLWR 458 (459)
T ss_pred CCceEEEeccCceeeecc
Confidence 999999999999999994
No 3
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=100.00 E-value=4.2e-43 Score=267.93 Aligned_cols=332 Identities=50% Similarity=0.867 Sum_probs=295.0
Q ss_pred CCceEEEEEccCCCEEEEecCCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCC---CCCeEEEEE
Q 018248 6 PITIHHLALNQDHGCFATGTETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPH---QSNKVMIWD 82 (359)
Q Consensus 6 ~~~v~~~~~s~~g~~l~~~~d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~---~d~~i~iwd 82 (359)
.....+++|+.|...+++|.|..++||++++.++...+.+. .++...+.+.+..+++++++|+.. ..++|.|||
T Consensus 5 ~~~~lsvs~NQD~ScFava~~~Gfriyn~~P~ke~~~r~~~---~~G~~~veMLfR~N~laLVGGg~~pky~pNkviIWD 81 (346)
T KOG2111|consen 5 EPKTLSVSFNQDHSCFAVATDTGFRIYNCDPFKESASRQFI---DGGFKIVEMLFRSNYLALVGGGSRPKYPPNKVIIWD 81 (346)
T ss_pred cCceeEEEEccCCceEEEEecCceEEEecCchhhhhhhccc---cCchhhhhHhhhhceEEEecCCCCCCCCCceEEEEe
Confidence 34566799999999999999999999999998776666653 666888999999999999998864 678999999
Q ss_pred CCCccEEeeeccCcceeEEEEecceeEEEecCeEEEEEcc-cceeeeeEeccCCCceeeeeecCCCccEEEecCCCCeeE
Q 018248 83 DHENRYLGELSFRSEVKNVRLRRDRIVVVLNQKVYVYNFT-DLKLVDQIETVVNPTGLCDVSQNAGPMVMACPGLLKGQV 161 (359)
Q Consensus 83 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~d~~i~i~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~v 161 (359)
-...+++.++....+|.++.+.++...++..+.|++|... +.+.++.++...++-..++++|..+..+||+.|..-|.|
T Consensus 82 D~k~~~i~el~f~~~I~~V~l~r~riVvvl~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~Gqv 161 (346)
T KOG2111|consen 82 DLKERCIIELSFNSEIKAVKLRRDRIVVVLENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKTGQV 161 (346)
T ss_pred cccCcEEEEEEeccceeeEEEcCCeEEEEecCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCCccceE
Confidence 8888999999999999999999999888899999999996 778888888887788899999999999999999999999
Q ss_pred EEEecCCe---eeEEeecccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcEEEEeecCCCCcceEEEEecCCCCEE
Q 018248 162 RVEDYGTK---KSKYITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSNAQWL 238 (359)
Q Consensus 162 ~~~~~~~~---~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l 238 (359)
+|-+.... ....+.+|...|.|++++.+|..+||+|..|++|||||..+|+++.+++.+...+.|.+++|||++.+|
T Consensus 162 Qi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s~L 241 (346)
T KOG2111|consen 162 QIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSSWL 241 (346)
T ss_pred EEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCccEE
Confidence 99544433 247889999999999999999999999999999999999999999999999888999999999999999
Q ss_pred EEEcCCCcEEEEEccCCCCCCCCCccccCCCCCccCCCCCceeeeeEeeeecceEEecccceeEEeecCCcEEEeeeccc
Q 018248 239 AASSDKGTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSAISSFRFIRGVLPKYFSSKWSMAQFRLPENVQYLVGFGRQ 318 (359)
Q Consensus 239 ~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~ 318 (359)
+++++.|+|+||.++...... ...+++.+.+.++|+|+++.|+++.++++.+....++|..+
T Consensus 242 avsSdKgTlHiF~l~~~~~~~------------------~~~SSl~~~~~~lpky~~S~wS~~~f~l~~~~~~~~~fg~~ 303 (346)
T KOG2111|consen 242 AVSSDKGTLHIFSLRDTENTE------------------DESSSLSFKRLVLPKYFSSEWSFAKFQLPQGTQCIIAFGSE 303 (346)
T ss_pred EEEcCCCeEEEEEeecCCCCc------------------cccccccccccccchhcccceeEEEEEccCCCcEEEEecCC
Confidence 999999999999998765331 11255556667899999999999999999999999999998
Q ss_pred CCEEEEEecCCeEEEEEeCCCCCCceEEeeeccccCCCCC
Q 018248 319 NNTIVIVGLDGSYYKCEFDPMKGGEMHQLEHYKFLKPEEP 358 (359)
Q Consensus 319 ~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (359)
.+.+++.+.||..+-+.++++++|++.+.++..|+..+++
T Consensus 304 ~nsvi~i~~Dgsy~k~~f~~~~~g~~~~~~~~~~~~~~~~ 343 (346)
T KOG2111|consen 304 TNTVIAICADGSYYKFKFDPKNGGESSRHEYSYFLSLQDD 343 (346)
T ss_pred CCeEEEEEeCCcEEEEEeccccccchhhhhhhheeecccC
Confidence 8899999999999999999999999999999998887664
No 4
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=4.1e-41 Score=254.06 Aligned_cols=281 Identities=15% Similarity=0.109 Sum_probs=246.3
Q ss_pred CCCCCceEEEEEccCCCEEEEec-CCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEE
Q 018248 3 QPDPITIHHLALNQDHGCFATGT-ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIW 81 (359)
Q Consensus 3 ~~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iw 81 (359)
..|.+.|+++.|++|.++|++++ ||.+.|||.-+..+....+++ ..-|-..+++|+++.++..+ -|+...||
T Consensus 52 kGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~---s~WVMtCA~sPSg~~VAcGG----LdN~Csiy 124 (343)
T KOG0286|consen 52 KGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLP---SSWVMTCAYSPSGNFVACGG----LDNKCSIY 124 (343)
T ss_pred cccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecC---ceeEEEEEECCCCCeEEecC----cCceeEEE
Confidence 35889999999999999999999 999999999887777667765 77788888888888887666 78999999
Q ss_pred ECCCc------cEEeeec-cCcceeEEEEecceeEEE--ecCeEEEEEcccceeeeeEeccCCCceeeeeecCCCccEEE
Q 018248 82 DDHEN------RYLGELS-FRSEVKNVRLRRDRIVVV--LNQKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAGPMVMA 152 (359)
Q Consensus 82 d~~~~------~~~~~~~-~~~~v~~~~~~~~~~~~~--~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 152 (359)
++.+. +..+++. |.+.+.+..|.+|+.++. .|.+..+||+++++.+..+.+|.+.+..++++|... ..++
T Consensus 125 ~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~-ntFv 203 (343)
T KOG0286|consen 125 PLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDNHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDG-NTFV 203 (343)
T ss_pred ecccccccccceeeeeecCccceeEEEEEcCCCceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCC-CeEE
Confidence 98855 3344555 999999999999998888 899999999999999999999999999999999532 2355
Q ss_pred ecCCCCeeEEEEecC-CeeeEEeecccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcEEEEeecCCCCcceEEEEe
Q 018248 153 CPGLLKGQVRVEDYG-TKKSKYITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAF 231 (359)
Q Consensus 153 ~~g~~d~~v~~~~~~-~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~ 231 (359)
+ |+-|+..++|+.+ +...+.|.+|+..|++++|.|+|.-+++|++|++ .++||++..+.+..+.......+|++++|
T Consensus 204 S-g~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~t-cRlyDlRaD~~~a~ys~~~~~~gitSv~F 281 (343)
T KOG0286|consen 204 S-GGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDAT-CRLYDLRADQELAVYSHDSIICGITSVAF 281 (343)
T ss_pred e-cccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCce-eEEEeecCCcEEeeeccCcccCCceeEEE
Confidence 5 7779999998766 5788999999999999999999999999999999 99999999999998886556679999999
Q ss_pred cCCCCEEEEEcCCCcEEEEEccCCCCCCCCCccccCCCCCccCCCCCceeeeeEeeeecceEEecccceeEEeecCCcEE
Q 018248 232 SSNAQWLAASSDKGTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSAISSFRFIRGVLPKYFSSKWSMAQFRLPENVQY 311 (359)
Q Consensus 232 s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 311 (359)
|..|++|++|..|.++.+||.-.++.. ..+..|++.|.
T Consensus 282 S~SGRlLfagy~d~~c~vWDtlk~e~v------------------------------------------g~L~GHeNRvS 319 (343)
T KOG0286|consen 282 SKSGRLLFAGYDDFTCNVWDTLKGERV------------------------------------------GVLAGHENRVS 319 (343)
T ss_pred cccccEEEeeecCCceeEeeccccceE------------------------------------------EEeeccCCeeE
Confidence 999999999999999999999887621 11446788999
Q ss_pred EeeecccCCEEEEEecCCeEEEEE
Q 018248 312 LVGFGRQNNTIVIVGLDGSYYKCE 335 (359)
Q Consensus 312 ~~~~s~~~~~l~~~~~dg~i~v~~ 335 (359)
++..+|||..|++|+.|..++||.
T Consensus 320 cl~~s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 320 CLGVSPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred EEEECCCCcEEEecchhHheeecC
Confidence 999999999999999999999994
No 5
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=3.7e-41 Score=252.72 Aligned_cols=290 Identities=12% Similarity=0.154 Sum_probs=237.7
Q ss_pred CCCCceEEEEEccCC-CEEEEec-CCceEEEEcCCCccee---eeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeE
Q 018248 4 PDPITIHHLALNQDH-GCFATGT-ETGFRVYLSDPYKPIM---RRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKV 78 (359)
Q Consensus 4 ~h~~~v~~~~~s~~g-~~l~~~~-d~~i~iw~~~~~~~~~---~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i 78 (359)
.|++.|..++..+.+ ..+++++ |..+.+|++......+ .+.+. ||+..|..+.+++++++.+.++ .|+++
T Consensus 13 gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~-GHsH~v~dv~~s~dg~~alS~s----wD~~l 87 (315)
T KOG0279|consen 13 GHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLT-GHSHFVSDVVLSSDGNFALSAS----WDGTL 87 (315)
T ss_pred CCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeee-ccceEecceEEccCCceEEecc----ccceE
Confidence 589999999999974 5667777 9999999997554333 45666 9999999999999999988887 89999
Q ss_pred EEEECCCccEEeeec-cCcceeEEEEecceeEEE---ecCeEEEEEcccceeeeeEecc-CCCceeeeeecCCCccEEEe
Q 018248 79 MIWDDHENRYLGELS-FRSEVKNVRLRRDRIVVV---LNQKVYVYNFTDLKLVDQIETV-VNPTGLCDVSQNAGPMVMAC 153 (359)
Q Consensus 79 ~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~ 153 (359)
++||+.+++..+.+. |...|.+++|++|...++ .|.+|++|++............ .+.|.++.|+|+....++++
T Consensus 88 rlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs 167 (315)
T KOG0279|consen 88 RLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVCKYTIHEDSHREWVSCVRFSPNESNPIIVS 167 (315)
T ss_pred EEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeecccEEEEEecCCCcCcEEEEEEcCCCCCcEEEE
Confidence 999999999999988 999999999999998888 9999999998655444444433 77899999999987777887
Q ss_pred cCCCCeeEEEEecCCee-eEEeecccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcEEEEeecCCCCcceEEEEec
Q 018248 154 PGLLKGQVRVEDYGTKK-SKYITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFS 232 (359)
Q Consensus 154 ~g~~d~~v~~~~~~~~~-~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s 232 (359)
++.|++|++|+.++.. ...+.+|.+.++.+++||||.++++|+.||. +.+||++.++.+..+. +...|.+++|+
T Consensus 168 -~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~-~~LwdL~~~k~lysl~---a~~~v~sl~fs 242 (315)
T KOG0279|consen 168 -ASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGE-AMLWDLNEGKNLYSLE---AFDIVNSLCFS 242 (315)
T ss_pred -ccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCCCce-EEEEEccCCceeEecc---CCCeEeeEEec
Confidence 7789999999998744 4567899999999999999999999999999 9999999999998887 56799999999
Q ss_pred CCCCEEEEEcCCCcEEEEEccCCCCCCCCCccccCCCCCccCCCCCceeeeeEeeeecceEEecccceeEEeecCCcEEE
Q 018248 233 SNAQWLAASSDKGTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSAISSFRFIRGVLPKYFSSKWSMAQFRLPENVQYL 312 (359)
Q Consensus 233 ~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 312 (359)
|+.-.|+.+... .|+|||++++...... .++...+ ..+.......+
T Consensus 243 pnrywL~~at~~-sIkIwdl~~~~~v~~l----------------------------~~d~~g~-----s~~~~~~~cls 288 (315)
T KOG0279|consen 243 PNRYWLCAATAT-SIKIWDLESKAVVEEL----------------------------KLDGIGP-----SSKAGDPICLS 288 (315)
T ss_pred CCceeEeeccCC-ceEEEeccchhhhhhc----------------------------ccccccc-----ccccCCcEEEE
Confidence 998777776655 4999999998743210 0000000 01111223467
Q ss_pred eeecccCCEEEEEecCCeEEEEEeC
Q 018248 313 VGFGRQNNTIVIVGLDGSYYKCEFD 337 (359)
Q Consensus 313 ~~~s~~~~~l~~~~~dg~i~v~~~~ 337 (359)
++|++||..|++|-.|+.|++|.+.
T Consensus 289 laws~dG~tLf~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 289 LAWSADGQTLFAGYTDNVIRVWQVA 313 (315)
T ss_pred EEEcCCCcEEEeeecCCcEEEEEee
Confidence 9999999999999999999999874
No 6
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=100.00 E-value=1.1e-38 Score=248.50 Aligned_cols=341 Identities=30% Similarity=0.524 Sum_probs=282.3
Q ss_pred CCCCceEEEEEccCCCEEEEecCCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEEC
Q 018248 4 PDPITIHHLALNQDHGCFATGTETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDD 83 (359)
Q Consensus 4 ~h~~~v~~~~~s~~g~~l~~~~d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~ 83 (359)
..+..+..+.|+.|...|..|+....++|+.++.++..... .+.+.++.+.++...+++++-.. .+.+++++.
T Consensus 3 ~~~~ti~~~~~Nqd~~~lsvGs~~Gyk~~~~~~~~k~~~~~-----~~~~~IvEmLFSSSLvaiV~~~q--pr~Lkv~~~ 75 (391)
T KOG2110|consen 3 GKKPTINFIGFNQDSTLLSVGSKDGYKIFSCSPFEKCFSKD-----TEGVSIVEMLFSSSLVAIVSIKQ--PRKLKVVHF 75 (391)
T ss_pred CCCcceeeeeeccceeEEEccCCCceeEEecCchHHhhccc-----CCCeEEEEeecccceeEEEecCC--CceEEEEEc
Confidence 45677888999999999999996667999999876643222 67889999999999999999753 478999999
Q ss_pred CCccEEeeeccCcceeEEEEecceeEEEecCeEEEEEcccceeeeeEecc-CCCceeeeeecCCCccEEEecCCC-CeeE
Q 018248 84 HENRYLGELSFRSEVKNVRLRRDRIVVVLNQKVYVYNFTDLKLVDQIETV-VNPTGLCDVSQNAGPMVMACPGLL-KGQV 161 (359)
Q Consensus 84 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~g~~-d~~v 161 (359)
+.+..+..+..+.+|.++.++.+...++....|+|||+++.+.++++... .++...++++++..+.++|+.++. .|.|
T Consensus 76 Kk~~~ICe~~fpt~IL~VrmNr~RLvV~Lee~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV 155 (391)
T KOG2110|consen 76 KKKTTICEIFFPTSILAVRMNRKRLVVCLEESIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDV 155 (391)
T ss_pred ccCceEEEEecCCceEEEEEccceEEEEEcccEEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceE
Confidence 99999999999999999999998888887777999999999999999765 566678999999998889987654 5889
Q ss_pred EEEec-CCeeeEEeecccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcEEEEeecCCCCcceEEEEecCCCCEEEE
Q 018248 162 RVEDY-GTKKSKYITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSNAQWLAA 240 (359)
Q Consensus 162 ~~~~~-~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~ 240 (359)
.+|+. +.+++..+..|++.+.+++|+++|.+|||+++.|+.||||.+.+|+.+.+|+.+.....|.+++|+|++++|++
T Consensus 156 ~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~ 235 (391)
T KOG2110|consen 156 VLFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAA 235 (391)
T ss_pred EEEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEE
Confidence 99554 55888899999999999999999999999999999899999999999999999877788999999999999999
Q ss_pred EcCCCcEEEEEccCCCCCCCCCccccCCCCCccCCCCCceeeeeEeeeecceEEecccceeEEeecCCcE-EEeeecc--
Q 018248 241 SSDKGTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSAISSFRFIRGVLPKYFSSKWSMAQFRLPENVQ-YLVGFGR-- 317 (359)
Q Consensus 241 ~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v-~~~~~s~-- 317 (359)
.++.++|+||.++.....+.. .+.....+.+........++...+.+++...|.|+..+++.+.. ..+++.+
T Consensus 236 sS~TeTVHiFKL~~~~~~~~~-----~p~~~~~~~~~~sk~~~sylps~V~~~~~~~R~FAt~~l~~s~~~~~~~l~~~~ 310 (391)
T KOG2110|consen 236 SSNTETVHIFKLEKVSNNPPE-----SPTAGTSWFGKVSKAATSYLPSQVSSVLDQSRKFATAKLPESGRKNICSLSSIQ 310 (391)
T ss_pred ecCCCeEEEEEecccccCCCC-----CCCCCCcccchhhhhhhhhcchhhhhhhhhccceeEEEccCCCccceEEeeccC
Confidence 999999999999987633211 11111111222222222255555667788899999999998554 6667764
Q ss_pred cCCEEEEEecCCeEEEEEeCCCCCCceEEeeeccccCCC
Q 018248 318 QNNTIVIVGLDGSYYKCEFDPMKGGEMHQLEHYKFLKPE 356 (359)
Q Consensus 318 ~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~~~~~~ 356 (359)
..+++.+++.||.++.|++++++||+|..++.+.+...-
T Consensus 311 ~~~~v~vas~dG~~y~y~l~~~~gGec~lik~h~~~~~~ 349 (391)
T KOG2110|consen 311 KIPRVLVASYDGHLYSYRLPPKEGGECALIKRHFLDGSI 349 (391)
T ss_pred CCCEEEEEEcCCeEEEEEcCCCCCceeEEEEeeccCCcc
Confidence 678999999999999999999999999999988876543
No 7
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=4.9e-40 Score=259.88 Aligned_cols=235 Identities=16% Similarity=0.200 Sum_probs=217.4
Q ss_pred CCCCceEEEEEccC--CCEEEEec-CCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEE
Q 018248 4 PDPITIHHLALNQD--HGCFATGT-ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMI 80 (359)
Q Consensus 4 ~h~~~v~~~~~s~~--g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~i 80 (359)
.|...|.++.|+|. +..||+|+ ||++++|++++...+ ..+. ||...|..++|.|++.++..++ .|.+-++
T Consensus 215 gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l--~~l~-gH~~RVs~VafHPsG~~L~Tas----fD~tWRl 287 (459)
T KOG0272|consen 215 GHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPL--QDLE-GHLARVSRVAFHPSGKFLGTAS----FDSTWRL 287 (459)
T ss_pred ccccceeeEEEccCCCccceeeeccCCceeeeccCCCcch--hhhh-cchhhheeeeecCCCceeeecc----cccchhh
Confidence 58999999999997 67899999 999999999975555 5566 9999999999999999999988 8999999
Q ss_pred EECCCccEEeeec-cCcceeEEEEecceeEEE---ecCeEEEEEcccceeeeeEeccCCCceeeeeecCCCccEEEecCC
Q 018248 81 WDDHENRYLGELS-FRSEVKNVRLRRDRIVVV---LNQKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAGPMVMACPGL 156 (359)
Q Consensus 81 wd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~ 156 (359)
||+.+++.+.... |...|.+++|++||.+++ .|..-+|||+++++++-.+.+|..+|..++|+|+|-. +|+ |+
T Consensus 288 WD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~--lAT-gs 364 (459)
T KOG0272|consen 288 WDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYH--LAT-GS 364 (459)
T ss_pred cccccchhhHhhcccccccceeEecCCCceeeccCccchhheeecccCcEEEEecccccceeeEeECCCceE--Eee-cC
Confidence 9999998877777 999999999999999999 8889999999999999999999999999999999865 777 88
Q ss_pred CCeeEEEEecCC-eeeEEeecccccccEEEEcc-CCcEEEEEeCCCCeEEEEEcCCCcEEEEeecCCCCcceEEEEecCC
Q 018248 157 LKGQVRVEDYGT-KKSKYITAHASRIASIAMTL-DGRFVATASSKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSN 234 (359)
Q Consensus 157 ~d~~v~~~~~~~-~~~~~~~~~~~~i~~~~~s~-~~~~l~~~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~ 234 (359)
.|++++||+.+. ..+..+.+|.+-|+.++|+| .|.+|+|++.|++ ++||..+++++++.+.+ |.+.|.++.+++|
T Consensus 365 ~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t-~kiWs~~~~~~~ksLaG--He~kV~s~Dis~d 441 (459)
T KOG0272|consen 365 SDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNT-VKIWSTRTWSPLKSLAG--HEGKVISLDISPD 441 (459)
T ss_pred CCCcEEEeeecccccceecccccchhhheEecccCCeEEEEcccCcc-eeeecCCCcccchhhcC--CccceEEEEeccC
Confidence 899999999887 56788899999999999999 7889999999999 99999999999999998 8899999999999
Q ss_pred CCEEEEEcCCCcEEEEE
Q 018248 235 AQWLAASSDKGTVHVFG 251 (359)
Q Consensus 235 ~~~l~~~~~dg~i~iw~ 251 (359)
++++++++.|.++++|.
T Consensus 442 ~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 442 SQAIATSSFDRTIKLWR 458 (459)
T ss_pred CceEEEeccCceeeecc
Confidence 99999999999999995
No 8
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=1.6e-37 Score=229.62 Aligned_cols=264 Identities=15% Similarity=0.213 Sum_probs=219.0
Q ss_pred CEEEEec-CCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEECCCcc--EEeeec-c
Q 018248 19 GCFATGT-ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDDHENR--YLGELS-F 94 (359)
Q Consensus 19 ~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~--~~~~~~-~ 94 (359)
-+|++++ |.+||+|...++... ++++ .....|..+++.++...++.++ ...|++||+.+++ ++.++. |
T Consensus 11 viLvsA~YDhTIRfWqa~tG~C~--rTiq-h~dsqVNrLeiTpdk~~LAaa~-----~qhvRlyD~~S~np~Pv~t~e~h 82 (311)
T KOG0315|consen 11 VILVSAGYDHTIRFWQALTGICS--RTIQ-HPDSQVNRLEITPDKKDLAAAG-----NQHVRLYDLNSNNPNPVATFEGH 82 (311)
T ss_pred eEEEeccCcceeeeeehhcCeEE--EEEe-cCccceeeEEEcCCcchhhhcc-----CCeeEEEEccCCCCCceeEEecc
Confidence 4778899 999999999987665 4443 2367799999999998888776 5899999998875 577887 8
Q ss_pred CcceeEEEEecceeEEE---ecCeEEEEEcccceeeeeEeccCCCceeeeeecCCCccEEEecCCCCeeEEEEecCCe-e
Q 018248 95 RSEVKNVRLRRDRIVVV---LNQKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAGPMVMACPGLLKGQVRVEDYGTK-K 170 (359)
Q Consensus 95 ~~~v~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~v~~~~~~~~-~ 170 (359)
...|..+.|..+|++++ .||+++|||++...+.+.++ +..+++.+.++|+... |++ |..+|.|++|+.... .
T Consensus 83 ~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~-~~spVn~vvlhpnQte--Lis-~dqsg~irvWDl~~~~c 158 (311)
T KOG0315|consen 83 TKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQ-HNSPVNTVVLHPNQTE--LIS-GDQSGNIRVWDLGENSC 158 (311)
T ss_pred CCceEEEEEeecCeEEEecCCCceEEEEeccCcccchhcc-CCCCcceEEecCCcce--EEe-ecCCCcEEEEEccCCcc
Confidence 89999999999999999 99999999999877666665 4588999999998877 555 778999999998765 2
Q ss_pred eE-EeecccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCc------EEEEeecCCCCcceEEEEecCCCCEEEEEcC
Q 018248 171 SK-YITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGS------LLQEMRRGAERAEIYSLAFSSNAQWLAASSD 243 (359)
Q Consensus 171 ~~-~~~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~------~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~ 243 (359)
.. .+......|.++...|||.+|+.+...|. .++|++-+.+ ++..++. |.+.+..+.+|||+++|++++.
T Consensus 159 ~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~-cyvW~l~~~~~~s~l~P~~k~~a--h~~~il~C~lSPd~k~lat~ss 235 (311)
T KOG0315|consen 159 THELIPEDDTSIQSLTVMPDGSMLAAANNKGN-CYVWRLLNHQTASELEPVHKFQA--HNGHILRCLLSPDVKYLATCSS 235 (311)
T ss_pred ccccCCCCCcceeeEEEcCCCcEEEEecCCcc-EEEEEccCCCccccceEhhheec--ccceEEEEEECCCCcEEEeecC
Confidence 22 33455678999999999999999999999 9999987643 4445555 8889999999999999999999
Q ss_pred CCcEEEEEccCCCCCCCCCccccCCCCCccCCCCCceeeeeEeeeecceEEecccceeEEeecCCcEEEeeecccCCEEE
Q 018248 244 KGTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSAISSFRFIRGVLPKYFSSKWSMAQFRLPENVQYLVGFGRQNNTIV 323 (359)
Q Consensus 244 dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 323 (359)
|.+++||+.+.-- ..+ ..++.+..++..++||.||.+|+
T Consensus 236 dktv~iwn~~~~~--------------------------------------kle---~~l~gh~rWvWdc~FS~dg~Ylv 274 (311)
T KOG0315|consen 236 DKTVKIWNTDDFF--------------------------------------KLE---LVLTGHQRWVWDCAFSADGEYLV 274 (311)
T ss_pred CceEEEEecCCce--------------------------------------eeE---EEeecCCceEEeeeeccCccEEE
Confidence 9999999998741 111 11444567999999999999999
Q ss_pred EEecCCeEEEEEeCC
Q 018248 324 IVGLDGSYYKCEFDP 338 (359)
Q Consensus 324 ~~~~dg~i~v~~~~~ 338 (359)
+|+.|+.+++|++..
T Consensus 275 Tassd~~~rlW~~~~ 289 (311)
T KOG0315|consen 275 TASSDHTARLWDLSA 289 (311)
T ss_pred ecCCCCceeeccccc
Confidence 999999999998876
No 9
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=1.6e-37 Score=248.98 Aligned_cols=277 Identities=17% Similarity=0.264 Sum_probs=241.0
Q ss_pred CCCCceEEEEEccCCCEEEEec-CCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEE
Q 018248 4 PDPITIHHLALNQDHGCFATGT-ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWD 82 (359)
Q Consensus 4 ~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd 82 (359)
+....|++++|+.+|..||+|+ ||.++||+... ... .++. .|.++|..+.|.-.+++++..+ .|+++.+||
T Consensus 233 ~~nkdVT~L~Wn~~G~~LatG~~~G~~riw~~~G-~l~--~tl~-~HkgPI~slKWnk~G~yilS~~----vD~ttilwd 304 (524)
T KOG0273|consen 233 PSNKDVTSLDWNNDGTLLATGSEDGEARIWNKDG-NLI--STLG-QHKGPIFSLKWNKKGTYILSGG----VDGTTILWD 304 (524)
T ss_pred CccCCcceEEecCCCCeEEEeecCcEEEEEecCc-hhh--hhhh-ccCCceEEEEEcCCCCEEEecc----CCccEEEEe
Confidence 4467899999999999999999 99999999874 333 3443 6899999999998888888777 799999999
Q ss_pred CCCccEEeeec-cCcceeEEEEecceeEEE--ecCeEEEEEcccceeeeeEeccCCCceeeeeecCCCccEEEecCCCCe
Q 018248 83 DHENRYLGELS-FRSEVKNVRLRRDRIVVV--LNQKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAGPMVMACPGLLKG 159 (359)
Q Consensus 83 ~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~--~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~ 159 (359)
..+++..+.+. |..+-.++.|-.+..+.. .|+.|+++.+....++.++.+|.++|..+.|.|.+. +|++ ++.|+
T Consensus 305 ~~~g~~~q~f~~~s~~~lDVdW~~~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~--LLaS-~SdD~ 381 (524)
T KOG0273|consen 305 AHTGTVKQQFEFHSAPALDVDWQSNDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGS--LLAS-CSDDG 381 (524)
T ss_pred ccCceEEEeeeeccCCccceEEecCceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCc--eEEE-ecCCC
Confidence 99999999999 666668899988888887 899999999988889999999999999999988875 3665 77899
Q ss_pred eEEEEec-CCeeeEEeecccccccEEEEccCCc---------EEEEEeCCCCeEEEEEcCCCcEEEEeecCCCCcceEEE
Q 018248 160 QVRVEDY-GTKKSKYITAHASRIASIAMTLDGR---------FVATASSKGTLIRVFNTMDGSLLQEMRRGAERAEIYSL 229 (359)
Q Consensus 160 ~v~~~~~-~~~~~~~~~~~~~~i~~~~~s~~~~---------~l~~~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~i~~~ 229 (359)
+++||.. +......+.+|...|..+.|+|+|. .+++++.|++ |++||+..+.++..|.. |..+|+++
T Consensus 382 TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dst-V~lwdv~~gv~i~~f~k--H~~pVysv 458 (524)
T KOG0273|consen 382 TLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDST-VKLWDVESGVPIHTLMK--HQEPVYSV 458 (524)
T ss_pred eeEeeecCCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCe-EEEEEccCCceeEeecc--CCCceEEE
Confidence 9999995 4577888999999999999999753 7899999999 99999999999999977 78899999
Q ss_pred EecCCCCEEEEEcCCCcEEEEEccCCCCCCCCCccccCCCCCccCCCCCceeeeeEeeeecceEEecccceeEEeecCCc
Q 018248 230 AFSSNAQWLAASSDKGTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSAISSFRFIRGVLPKYFSSKWSMAQFRLPENV 309 (359)
Q Consensus 230 ~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (359)
+|||+|+++|+|+.||.|.||++++++-. +.. ...+.
T Consensus 459 afS~~g~ylAsGs~dg~V~iws~~~~~l~---------------------------------~s~----------~~~~~ 495 (524)
T KOG0273|consen 459 AFSPNGRYLASGSLDGCVHIWSTKTGKLV---------------------------------KSY----------QGTGG 495 (524)
T ss_pred EecCCCcEEEecCCCCeeEeccccchhee---------------------------------Eee----------cCCCe
Confidence 99999999999999999999999998721 101 12356
Q ss_pred EEEeeecccCCEEEEEecCCeEEEEEeC
Q 018248 310 QYLVGFGRQNNTIVIVGLDGSYYKCEFD 337 (359)
Q Consensus 310 v~~~~~s~~~~~l~~~~~dg~i~v~~~~ 337 (359)
|..+.|+.+|+.|.++-.||.+.+.++.
T Consensus 496 Ifel~Wn~~G~kl~~~~sd~~vcvldlr 523 (524)
T KOG0273|consen 496 IFELCWNAAGDKLGACASDGSVCVLDLR 523 (524)
T ss_pred EEEEEEcCCCCEEEEEecCCCceEEEec
Confidence 8899999999999999999999998774
No 10
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=7e-38 Score=265.99 Aligned_cols=241 Identities=18% Similarity=0.269 Sum_probs=218.4
Q ss_pred CCceEEEEEccCCCEEEEec-CCceEEEEcCCCcce-----------------------------eeeecccCCCCceeE
Q 018248 6 PITIHHLALNQDHGCFATGT-ETGFRVYLSDPYKPI-----------------------------MRRDFDRNPRGGTQL 55 (359)
Q Consensus 6 ~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~-----------------------------~~~~~~~~h~~~v~~ 55 (359)
...++|..|++|++.||.|. |..|++|.+.+.+.+ ....+. ||.++|..
T Consensus 378 ~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~-GH~GPVyg 456 (707)
T KOG0263|consen 378 YQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLY-GHSGPVYG 456 (707)
T ss_pred CCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEee-cCCCceee
Confidence 46789999999999999999 999999998852210 011222 99999999
Q ss_pred EEEeccCCEEEEEecCCCCCCeEEEEECCCccEEeeec-cCcceeEEEEecceeEEE---ecCeEEEEEcccceeeeeEe
Q 018248 56 VSMLFRSNIICLVNSGPHQSNKVMIWDDHENRYLGELS-FRSEVKNVRLRRDRIVVV---LNQKVYVYNFTDLKLVDQIE 131 (359)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~ 131 (359)
..++|+.++++.++ +|+++++|.+.+..++..++ |..+|+++.|+|.|.+++ .|++-++|.....++++.+.
T Consensus 457 ~sFsPd~rfLlScS----ED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~PlRifa 532 (707)
T KOG0263|consen 457 CSFSPDRRFLLSCS----EDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHNKPLRIFA 532 (707)
T ss_pred eeecccccceeecc----CCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeecccCCchhhhc
Confidence 99999999998888 89999999999999999998 999999999999999999 89999999999999999999
Q ss_pred ccCCCceeeeeecCCCccEEEecCCCCeeEEEEecC-CeeeEEeecccccccEEEEccCCcEEEEEeCCCCeEEEEEcCC
Q 018248 132 TVVNPTGLCDVSQNAGPMVMACPGLLKGQVRVEDYG-TKKSKYITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMD 210 (359)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~l~~~g~~d~~v~~~~~~-~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~ 210 (359)
+|...+.++.|+|+..+ +++ |+.|.+|++|+.. +..++.|.+|.++|.+++|||+|++|++|+.||. |.+||+.+
T Consensus 533 ghlsDV~cv~FHPNs~Y--~aT-GSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~-I~iWDl~~ 608 (707)
T KOG0263|consen 533 GHLSDVDCVSFHPNSNY--VAT-GSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDEDGL-IKIWDLAN 608 (707)
T ss_pred ccccccceEEECCcccc--ccc-CCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecccCCc-EEEEEcCC
Confidence 99999999999999875 776 8899999998765 5788999999999999999999999999999999 99999999
Q ss_pred CcEEEEeecCCCCcceEEEEecCCCCEEEEEcCCCcEEEEEccCCCC
Q 018248 211 GSLLQEMRRGAERAEIYSLAFSSNAQWLAASSDKGTVHVFGLKVDSG 257 (359)
Q Consensus 211 ~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~ 257 (359)
++.+..+.+ |.+.|.++.||.||..||+|+.|.+|++||+.....
T Consensus 609 ~~~v~~l~~--Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~~~ 653 (707)
T KOG0263|consen 609 GSLVKQLKG--HTGTIYSLSFSRDGNVLASGGADNSVRLWDLTKVIE 653 (707)
T ss_pred Ccchhhhhc--ccCceeEEEEecCCCEEEecCCCCeEEEEEchhhcc
Confidence 999999998 689999999999999999999999999999987653
No 11
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=2.2e-37 Score=248.19 Aligned_cols=281 Identities=14% Similarity=0.243 Sum_probs=234.6
Q ss_pred CCCCceEEEEEccCCC-EEEEec-CCceEEEEcCC------Ccceeeeecc-c----CCCCceeEEEEeccCCEEEEEec
Q 018248 4 PDPITIHHLALNQDHG-CFATGT-ETGFRVYLSDP------YKPIMRRDFD-R----NPRGGTQLVSMLFRSNIICLVNS 70 (359)
Q Consensus 4 ~h~~~v~~~~~s~~g~-~l~~~~-d~~i~iw~~~~------~~~~~~~~~~-~----~h~~~v~~~~~~~~~~~~~~~~~ 70 (359)
+|+.+|.+.+|+|-.. .+++|+ |.+.++|++.. .+..++..+. . .-...|++++|..+++.+++.+
T Consensus 176 ~~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~~LatG~- 254 (524)
T KOG0273|consen 176 RHESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGTLLATGS- 254 (524)
T ss_pred cCCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCCCeEEEee-
Confidence 4899999999999776 889998 99999999863 1111111110 0 1246789999999999999888
Q ss_pred CCCCCCeEEEEECCCccEEeeec-cCcceeEEEEecceeEEE---ecCeEEEEEcccceeeeeEeccCCCceeeeeecCC
Q 018248 71 GPHQSNKVMIWDDHENRYLGELS-FRSEVKNVRLRRDRIVVV---LNQKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNA 146 (359)
Q Consensus 71 ~~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (359)
.||.+++|+ ..|..+.++. |.++|.++.|+..|.+++ .|+++.+||..++...+.+..|..+.-.+.|--+.
T Consensus 255 ---~~G~~riw~-~~G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~~~ 330 (524)
T KOG0273|consen 255 ---EDGEARIWN-KDGNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQSND 330 (524)
T ss_pred ---cCcEEEEEe-cCchhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeeeccCCccceEEecCc
Confidence 899999999 6778888887 999999999999999988 89999999999999999988887764445554443
Q ss_pred CccEEEecCCCCeeEEEEecC-CeeeEEeecccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcEEEEeecCCCCcc
Q 018248 147 GPMVMACPGLLKGQVRVEDYG-TKKSKYITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRRGAERAE 225 (359)
Q Consensus 147 ~~~~l~~~g~~d~~v~~~~~~-~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~ 225 (359)
. +++ .+.|+.|+|+... ..++.++.+|.++|.++.|+|.|.+|++++.|++ ++||.+........+.. |...
T Consensus 331 ~---F~t-s~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~T-lkiWs~~~~~~~~~l~~--Hske 403 (524)
T KOG0273|consen 331 E---FAT-SSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGT-LKIWSMGQSNSVHDLQA--HSKE 403 (524)
T ss_pred e---Eee-cCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCe-eEeeecCCCcchhhhhh--hccc
Confidence 3 555 5579999996555 4788899999999999999999999999999999 99999998888888887 7789
Q ss_pred eEEEEecCCC---------CEEEEEcCCCcEEEEEccCCCCCCCCCccccCCCCCccCCCCCceeeeeEeeeecceEEec
Q 018248 226 IYSLAFSSNA---------QWLAASSDKGTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSAISSFRFIRGVLPKYFSS 296 (359)
Q Consensus 226 i~~~~~s~~~---------~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (359)
|..+.|+|+| ..|++++.|++|++||+..+.+.
T Consensus 404 i~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i-------------------------------------- 445 (524)
T KOG0273|consen 404 IYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPI-------------------------------------- 445 (524)
T ss_pred eeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCcee--------------------------------------
Confidence 9999999975 37899999999999999998743
Q ss_pred ccceeEEeecCCcEEEeeecccCCEEEEEecCCeEEEEEeCC
Q 018248 297 KWSMAQFRLPENVQYLVGFGRQNNTIVIVGLDGSYYKCEFDP 338 (359)
Q Consensus 297 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~ 338 (359)
..+..|..+|.+++|+|+|++|++|+-||.|++|+...
T Consensus 446 ----~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~ 483 (524)
T KOG0273|consen 446 ----HTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKT 483 (524)
T ss_pred ----EeeccCCCceEEEEecCCCcEEEecCCCCeeEeccccc
Confidence 12444668999999999999999999999999998876
No 12
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=2.7e-37 Score=228.38 Aligned_cols=244 Identities=17% Similarity=0.231 Sum_probs=209.3
Q ss_pred CCCCceEEEEEccCCCEEEEecCCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEEC
Q 018248 4 PDPITIHHLALNQDHGCFATGTETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDD 83 (359)
Q Consensus 4 ~h~~~v~~~~~s~~g~~l~~~~d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~ 83 (359)
-..+.|+.+...||++.||+++...||+||+++.......++. +|...|..+.|..++..+...+ +||+++|||+
T Consensus 38 h~dsqVNrLeiTpdk~~LAaa~~qhvRlyD~~S~np~Pv~t~e-~h~kNVtaVgF~~dgrWMyTgs----eDgt~kIWdl 112 (311)
T KOG0315|consen 38 HPDSQVNRLEITPDKKDLAAAGNQHVRLYDLNSNNPNPVATFE-GHTKNVTAVGFQCDGRWMYTGS----EDGTVKIWDL 112 (311)
T ss_pred cCccceeeEEEcCCcchhhhccCCeeEEEEccCCCCCceeEEe-ccCCceEEEEEeecCeEEEecC----CCceEEEEec
Confidence 3467899999999999999999999999999988776667787 9999999999999988888777 8999999999
Q ss_pred CCccEEeeeccCcceeEEEEecceeEEE---ecCeEEEEEcccceeeeeE-eccCCCceeeeeecCCCccEEEecCCCCe
Q 018248 84 HENRYLGELSFRSEVKNVRLRRDRIVVV---LNQKVYVYNFTDLKLVDQI-ETVVNPTGLCDVSQNAGPMVMACPGLLKG 159 (359)
Q Consensus 84 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~g~~d~ 159 (359)
+...+.+.+++..+|+++..+|+..-++ .+|.|++||+........+ ......+..+.+.|++.. ++. +...|
T Consensus 113 R~~~~qR~~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsm--l~a-~nnkG 189 (311)
T KOG0315|consen 113 RSLSCQRNYQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSM--LAA-ANNKG 189 (311)
T ss_pred cCcccchhccCCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCCCCCcceeeEEEcCCCcE--EEE-ecCCc
Confidence 9988888899999999999999865544 8899999999777555554 334456778888998876 554 55789
Q ss_pred eEEEEecCC-------eeeEEeecccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCC-cEEEEeecCCCCcceEEEEe
Q 018248 160 QVRVEDYGT-------KKSKYITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDG-SLLQEMRRGAERAEIYSLAF 231 (359)
Q Consensus 160 ~v~~~~~~~-------~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~-~~~~~~~~~~~~~~i~~~~~ 231 (359)
.+++|+... .++..++.|.+.+..+.+|||+++||+++.|.+ ++||++.+. +....+.+ |...++..+|
T Consensus 190 ~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdkt-v~iwn~~~~~kle~~l~g--h~rWvWdc~F 266 (311)
T KOG0315|consen 190 NCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKT-VKIWNTDDFFKLELVLTG--HQRWVWDCAF 266 (311)
T ss_pred cEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCce-EEEEecCCceeeEEEeec--CCceEEeeee
Confidence 999998754 456678899999999999999999999999999 999999887 44445554 7789999999
Q ss_pred cCCCCEEEEEcCCCcEEEEEccCCCCC
Q 018248 232 SSNAQWLAASSDKGTVHVFGLKVDSGS 258 (359)
Q Consensus 232 s~~~~~l~~~~~dg~i~iw~~~~~~~~ 258 (359)
|.||+||++|+.|+.+++|++..++..
T Consensus 267 S~dg~YlvTassd~~~rlW~~~~~k~v 293 (311)
T KOG0315|consen 267 SADGEYLVTASSDHTARLWDLSAGKEV 293 (311)
T ss_pred ccCccEEEecCCCCceeecccccCcee
Confidence 999999999999999999999998743
No 13
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.9e-37 Score=240.95 Aligned_cols=277 Identities=14% Similarity=0.180 Sum_probs=240.2
Q ss_pred CCCceEEEEEccCCCEEEEec-CCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEEC
Q 018248 5 DPITIHHLALNQDHGCFATGT-ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDD 83 (359)
Q Consensus 5 h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~ 83 (359)
|..+|+.+-|+|+-..+++++ |.+|++||..+++. ...++ ||...+..+++...+.+++.++ .|-.+++||.
T Consensus 107 ~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~--e~~Lr-GHt~sv~di~~~a~Gk~l~tcS----sDl~~~LWd~ 179 (406)
T KOG0295|consen 107 HRSSVTRVIFHPSEALVVSASEDATIKVFDTETGEL--ERSLR-GHTDSVFDISFDASGKYLATCS----SDLSAKLWDF 179 (406)
T ss_pred cccceeeeeeccCceEEEEecCCceEEEEEccchhh--hhhhh-ccccceeEEEEecCccEEEecC----CccchhheeH
Confidence 778999999999999999998 99999999999877 46776 9999998888888887777777 6777999998
Q ss_pred CC-ccEEeeec-cCcceeEEEEecceeEEE---ecCeEEEEEcccceeeeeEeccCCCceeeeeecCCCccEEEecCCCC
Q 018248 84 HE-NRYLGELS-FRSEVKNVRLRRDRIVVV---LNQKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAGPMVMACPGLLK 158 (359)
Q Consensus 84 ~~-~~~~~~~~-~~~~v~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d 158 (359)
.+ .++++.+. |+..|.++.|-|.|.+++ .|.+|+.|++.++-++.++.+|...+..+..+.|+ .++|+ ++.|
T Consensus 180 ~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DG--ti~As-~s~d 256 (406)
T KOG0295|consen 180 DTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDG--TIIAS-CSND 256 (406)
T ss_pred HHHHHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecccceeEEeccCchHhEEEEEecCCe--eEEEe-cCCC
Confidence 77 45555554 889999999999998888 89999999999999999999999977777665555 55776 8889
Q ss_pred eeEEEEecCCe-eeEEeecccccccEEEEccC---------------CcEEEEEeCCCCeEEEEEcCCCcEEEEeecCCC
Q 018248 159 GQVRVEDYGTK-KSKYITAHASRIASIAMTLD---------------GRFVATASSKGTLIRVFNTMDGSLLQEMRRGAE 222 (359)
Q Consensus 159 ~~v~~~~~~~~-~~~~~~~~~~~i~~~~~s~~---------------~~~l~~~~~dg~~i~iwd~~~~~~~~~~~~~~~ 222 (359)
.++++|....+ +...++.|+.+|.+++|.|. ++++.+++.|++ |++||+.++.++.++.+ |
T Consensus 257 qtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDkt-Ik~wdv~tg~cL~tL~g--h 333 (406)
T KOG0295|consen 257 QTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKT-IKIWDVSTGMCLFTLVG--H 333 (406)
T ss_pred ceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccce-EEEEeccCCeEEEEEec--c
Confidence 99999988764 56678899999999999773 358999999999 99999999999999998 7
Q ss_pred CcceEEEEecCCCCEEEEEcCCCcEEEEEccCCCCCCCCCccccCCCCCccCCCCCceeeeeEeeeecceEEecccceeE
Q 018248 223 RAEIYSLAFSSNAQWLAASSDKGTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSAISSFRFIRGVLPKYFSSKWSMAQ 302 (359)
Q Consensus 223 ~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (359)
...|..++|+|.|+||+++.+|+++++||++++++.. .
T Consensus 334 dnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk------------------------------------------~ 371 (406)
T KOG0295|consen 334 DNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMK------------------------------------------T 371 (406)
T ss_pred cceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeee------------------------------------------c
Confidence 8899999999999999999999999999999987431 1
Q ss_pred EeecCCcEEEeeecccCCEEEEEecCCeEEEEEe
Q 018248 303 FRLPENVQYLVGFGRQNNTIVIVGLDGSYYKCEF 336 (359)
Q Consensus 303 ~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~ 336 (359)
+..|...++++.|..+..++++|+-|-++.+|..
T Consensus 372 ~~ah~hfvt~lDfh~~~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 372 LEAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWEC 405 (406)
T ss_pred cCCCcceeEEEecCCCCceEEeccccceeeeeec
Confidence 3345678899999999999999999999999963
No 14
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=6.7e-36 Score=223.61 Aligned_cols=284 Identities=12% Similarity=0.200 Sum_probs=232.9
Q ss_pred CCCCCceEEEEEccC-CCEEEEec-CCceEEEEcCC-CcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEE
Q 018248 3 QPDPITIHHLALNQD-HGCFATGT-ETGFRVYLSDP-YKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVM 79 (359)
Q Consensus 3 ~~h~~~v~~~~~s~~-g~~l~~~~-d~~i~iw~~~~-~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~ 79 (359)
+.|++.|..++|+|- |..||+|+ |+.|++|+... ....++..+..+|...|+.++|+|.+++++.++ .|.++.
T Consensus 11 ~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aS----FD~t~~ 86 (312)
T KOG0645|consen 11 SGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASAS----FDATVV 86 (312)
T ss_pred cCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEee----ccceEE
Confidence 568899999999998 99999999 99999999984 334555566668999999999999999998888 899999
Q ss_pred EEECCCc--cEEeeec-cCcceeEEEEecceeEEE---ecCeEEEEEccc---ceeeeeEeccCCCceeeeeecCCCccE
Q 018248 80 IWDDHEN--RYLGELS-FRSEVKNVRLRRDRIVVV---LNQKVYVYNFTD---LKLVDQIETVVNPTGLCDVSQNAGPMV 150 (359)
Q Consensus 80 iwd~~~~--~~~~~~~-~~~~v~~~~~~~~~~~~~---~d~~i~i~d~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (359)
||.-..+ +++..+. |+.+|.+++|+++|.+|+ .|+.|-||.+.. -++...++.|...+..+.|+|..+-
T Consensus 87 Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~dl-- 164 (312)
T KOG0645|consen 87 IWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTEDL-- 164 (312)
T ss_pred EeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCcce--
Confidence 9985544 6777887 999999999999999999 999999999853 3577888999999999999998764
Q ss_pred EEecCCCCeeEEEEecC-C---eeeEEeecccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcEEEEeecCCCCcce
Q 018248 151 MACPGLLKGQVRVEDYG-T---KKSKYITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRRGAERAEI 226 (359)
Q Consensus 151 l~~~g~~d~~v~~~~~~-~---~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~i 226 (359)
|++ ++.|++|++|... . .+.+++.+|...|.+++|+|.|..|++++.|++ ++||...+ .+. +.|...+
T Consensus 165 L~S-~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~t-v~Iw~~~~-----~~~-~~~sr~~ 236 (312)
T KOG0645|consen 165 LFS-CSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGT-VSIWRLYT-----DLS-GMHSRAL 236 (312)
T ss_pred eEE-eccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcc-eEeeeecc-----Ccc-hhcccce
Confidence 555 7799999996554 2 678999999999999999999999999999999 99998652 222 3366789
Q ss_pred EEEEecCCCCEEEEEcCCCcEEEEEccCCCCCCCCCccccCCCCCccCCCCCceeeeeEeeeecceEEecccceeEEeec
Q 018248 227 YSLAFSSNAQWLAASSDKGTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSAISSFRFIRGVLPKYFSSKWSMAQFRLP 306 (359)
Q Consensus 227 ~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (359)
+.+.|. ...|++++.|+.|++|.-......+. +..+ ...-..|
T Consensus 237 Y~v~W~--~~~IaS~ggD~~i~lf~~s~~~d~p~----------------------~~l~-------------~~~~~aH 279 (312)
T KOG0645|consen 237 YDVPWD--NGVIASGGGDDAIRLFKESDSPDEPS----------------------WNLL-------------AKKEGAH 279 (312)
T ss_pred Eeeeec--ccceEeccCCCEEEEEEecCCCCCch----------------------HHHH-------------Hhhhccc
Confidence 999997 45899999999999998875422110 0000 0012234
Q ss_pred CCcEEEeeeccc-CCEEEEEecCCeEEEEEeC
Q 018248 307 ENVQYLVGFGRQ-NNTIVIVGLDGSYYKCEFD 337 (359)
Q Consensus 307 ~~~v~~~~~s~~-~~~l~~~~~dg~i~v~~~~ 337 (359)
...|++++|.|. .++|++++.||.+++|.+.
T Consensus 280 e~dVNsV~w~p~~~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 280 EVDVNSVQWNPKVSNRLASGGDDGIVNFWELE 311 (312)
T ss_pred ccccceEEEcCCCCCceeecCCCceEEEEEec
Confidence 567899999994 6899999999999999874
No 15
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.2e-37 Score=243.74 Aligned_cols=238 Identities=17% Similarity=0.233 Sum_probs=200.2
Q ss_pred CCCCceEEEEEccCCCEEEEec-CCceEEEEcCCCcceeeeecccCCCCceeEEEEecc---CCEEEEEecCCCCCCeEE
Q 018248 4 PDPITIHHLALNQDHGCFATGT-ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFR---SNIICLVNSGPHQSNKVM 79 (359)
Q Consensus 4 ~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~---~~~~~~~~~~~~~d~~i~ 79 (359)
.|.+.|.|++|+|||+.||+|+ ||+|++||..++++.- ..+. ||...|..++|.|- +....+++++ .||.++
T Consensus 155 gH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~~g-~~l~-gH~K~It~Lawep~hl~p~~r~las~s--kDg~vr 230 (480)
T KOG0271|consen 155 GHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQIG-RALR-GHKKWITALAWEPLHLVPPCRRLASSS--KDGSVR 230 (480)
T ss_pred CCccEEEEEEECCCcchhhccccCCeEEEecCCCCCccc-cccc-CcccceeEEeecccccCCCccceeccc--CCCCEE
Confidence 5899999999999999999999 9999999999876654 4565 99999999998752 2222344444 689999
Q ss_pred EEECCCccEEeeec-cCcceeEEEEecceeEEE--ecCeEEEEEcccceeeeeEec------------------------
Q 018248 80 IWDDHENRYLGELS-FRSEVKNVRLRRDRIVVV--LNQKVYVYNFTDLKLVDQIET------------------------ 132 (359)
Q Consensus 80 iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~--~d~~i~i~d~~~~~~~~~~~~------------------------ 132 (359)
|||+..++++..+. |..+|+|++|--+|.+.. .|++|++|+..+|++...+++
T Consensus 231 IWd~~~~~~~~~lsgHT~~VTCvrwGG~gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t 310 (480)
T KOG0271|consen 231 IWDTKLGTCVRTLSGHTASVTCVRWGGEGLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHT 310 (480)
T ss_pred EEEccCceEEEEeccCccceEEEEEcCCceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccc
Confidence 99999999999988 999999999988877666 899999999876654333333
Q ss_pred -------------------------------------------------------cCCCceeeeeecCCCccEEEecCCC
Q 018248 133 -------------------------------------------------------VVNPTGLCDVSQNAGPMVMACPGLL 157 (359)
Q Consensus 133 -------------------------------------------------------~~~~~~~~~~~~~~~~~~l~~~g~~ 157 (359)
|...++.+.|+|++.. +|+ ++-
T Consensus 311 ~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~--IAS-aSF 387 (480)
T KOG0271|consen 311 GRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRY--IAS-ASF 387 (480)
T ss_pred cccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCccE--EEE-eec
Confidence 3334455667777654 666 678
Q ss_pred CeeEEEEecC-CeeeEEeecccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcEEEEeecCCCCcceEEEEecCCCC
Q 018248 158 KGQVRVEDYG-TKKSKYITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSNAQ 236 (359)
Q Consensus 158 d~~v~~~~~~-~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~ 236 (359)
|..|++|+-+ ++.+..+++|-..|..++|+.|.++|++|+.|.+ +++||+++.+....+.+ |...|.++.|+|||+
T Consensus 388 DkSVkLW~g~tGk~lasfRGHv~~VYqvawsaDsRLlVS~SkDsT-LKvw~V~tkKl~~DLpG--h~DEVf~vDwspDG~ 464 (480)
T KOG0271|consen 388 DKSVKLWDGRTGKFLASFRGHVAAVYQVAWSADSRLLVSGSKDST-LKVWDVRTKKLKQDLPG--HADEVFAVDWSPDGQ 464 (480)
T ss_pred ccceeeeeCCCcchhhhhhhccceeEEEEeccCccEEEEcCCCce-EEEEEeeeeeecccCCC--CCceEEEEEecCCCc
Confidence 9999997754 5778899999999999999999999999999999 99999999999999987 778999999999999
Q ss_pred EEEEEcCCCcEEEEE
Q 018248 237 WLAASSDKGTVHVFG 251 (359)
Q Consensus 237 ~l~~~~~dg~i~iw~ 251 (359)
.+++|+.|..+++|.
T Consensus 465 rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 465 RVASGGKDKVLRLWR 479 (480)
T ss_pred eeecCCCceEEEeec
Confidence 999999999999995
No 16
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=1.5e-36 Score=235.68 Aligned_cols=298 Identities=17% Similarity=0.223 Sum_probs=252.2
Q ss_pred CCCCCceEEEEEccCCCEEEEec-CCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEE
Q 018248 3 QPDPITIHHLALNQDHGCFATGT-ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIW 81 (359)
Q Consensus 3 ~~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iw 81 (359)
+.|.+.|.|+++.|-.++|++|+ |++|+|||+.+++.+ .++. ||-..+..++++....+++.++ .|+.|+-|
T Consensus 148 ~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~Lk--ltlt-Ghi~~vr~vavS~rHpYlFs~g----edk~VKCw 220 (460)
T KOG0285|consen 148 SGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLK--LTLT-GHIETVRGVAVSKRHPYLFSAG----EDKQVKCW 220 (460)
T ss_pred hhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEE--Eeec-chhheeeeeeecccCceEEEec----CCCeeEEE
Confidence 46899999999999999999999 999999999998776 4454 8999999999998888888887 79999999
Q ss_pred ECCCccEEeeec-cCcceeEEEEecceeEEE---ecCeEEEEEcccceeeeeEeccCCCceeeeeecCCCccEEEecCCC
Q 018248 82 DDHENRYLGELS-FRSEVKNVRLRRDRIVVV---LNQKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAGPMVMACPGLL 157 (359)
Q Consensus 82 d~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~ 157 (359)
|++.++.++.+. |-..|.+++.+|.-..++ .|.++++||+++...+..+.+|..++..+.+.|-... +++ |+.
T Consensus 221 DLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpq--vit-~S~ 297 (460)
T KOG0285|consen 221 DLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQ--VIT-GSH 297 (460)
T ss_pred echhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCc--eEE-ecC
Confidence 999999999987 999999999999888777 8999999999999999999999999999988887666 554 789
Q ss_pred CeeEEEEecC-CeeeEEeecccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcEEEEeecCCCCcceEEEEecCCCC
Q 018248 158 KGQVRVEDYG-TKKSKYITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSNAQ 236 (359)
Q Consensus 158 d~~v~~~~~~-~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~ 236 (359)
|++|++|+.. ++....+..|+..+.+++.+|....+|+++.|. |+-|++..|..+..+.+ |.+-|++++...|+
T Consensus 298 D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~dn--ik~w~~p~g~f~~nlsg--h~~iintl~~nsD~- 372 (460)
T KOG0285|consen 298 DSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPDN--IKQWKLPEGEFLQNLSG--HNAIINTLSVNSDG- 372 (460)
T ss_pred CceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccCCcc--ceeccCCccchhhcccc--ccceeeeeeeccCc-
Confidence 9999998765 577888899999999999999999999999986 89999999999998876 78899999998776
Q ss_pred EEEEEcCCCcEEEEEccCCCCCCCCCccccCCCCCccCCCCCceeeeeEeeeecceEEecccceeEEeecCCcEEEeeec
Q 018248 237 WLAASSDKGTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSAISSFRFIRGVLPKYFSSKWSMAQFRLPENVQYLVGFG 316 (359)
Q Consensus 237 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 316 (359)
++++|+++|.+.+||.+++...+..+.. ..|...+. +..|.+.+|.
T Consensus 373 v~~~G~dng~~~fwdwksg~nyQ~~~t~------------------------vqpGSl~s----------EagI~as~fD 418 (460)
T KOG0285|consen 373 VLVSGGDNGSIMFWDWKSGHNYQRGQTI------------------------VQPGSLES----------EAGIFASCFD 418 (460)
T ss_pred eEEEcCCceEEEEEecCcCccccccccc------------------------ccCCcccc----------ccceeEEeec
Confidence 7788999999999999998743210000 00111111 2457888999
Q ss_pred ccCCEEEEEecCCeEEEEEeCCCCCCceEEeee
Q 018248 317 RQNNTIVIVGLDGSYYKCEFDPMKGGEMHQLEH 349 (359)
Q Consensus 317 ~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~ 349 (359)
..|..|++|..|.+|.+|+=+.....|...+.|
T Consensus 419 ktg~rlit~eadKtIk~~keDe~aT~EthPl~w 451 (460)
T KOG0285|consen 419 KTGSRLITGEADKTIKMYKEDEHATEETHPLNW 451 (460)
T ss_pred ccCceEEeccCCcceEEEecccccCcccCCcCC
Confidence 999999999999999999887655555555444
No 17
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=7.2e-38 Score=246.65 Aligned_cols=279 Identities=10% Similarity=0.127 Sum_probs=233.2
Q ss_pred CCCceEEEEEccCCCEEEEec-CCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEEC
Q 018248 5 DPITIHHLALNQDHGCFATGT-ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDD 83 (359)
Q Consensus 5 h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~ 83 (359)
-+-+|..+.|.|+|+.|++|+ .|.+.+|+....... ..+ .+|...|..+.|+.++..++... .+|.|++|+.
T Consensus 95 vkc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFE--til-QaHDs~Vr~m~ws~~g~wmiSgD----~gG~iKyWqp 167 (464)
T KOG0284|consen 95 VKCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFE--TIL-QAHDSPVRTMKWSHNGTWMISGD----KGGMIKYWQP 167 (464)
T ss_pred cccceeeEEEcCCCceeEeecccccEEEecCceeeHH--HHh-hhhcccceeEEEccCCCEEEEcC----CCceEEeccc
Confidence 356899999999999999999 999999998643322 222 28999999999999888877665 6799999996
Q ss_pred CCccEEeeec-cCcceeEEEEecceeEEE---ecCeEEEEEcccceeeeeEeccCCCceeeeeecCCCccEEEecCCCCe
Q 018248 84 HENRYLGELS-FRSEVKNVRLRRDRIVVV---LNQKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAGPMVMACPGLLKG 159 (359)
Q Consensus 84 ~~~~~~~~~~-~~~~v~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~ 159 (359)
.......... |...|++++|+|+...++ .||+|+|||....+....+.+|.-.+.+++|+|.... +++ |+.|.
T Consensus 168 nmnnVk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgL--ias-gskDn 244 (464)
T KOG0284|consen 168 NMNNVKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGL--IAS-GSKDN 244 (464)
T ss_pred chhhhHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccce--eEE-ccCCc
Confidence 5544333333 559999999999765555 8999999999988888889999999999999997653 555 77899
Q ss_pred eEEEEecC-CeeeEEeecccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcEEEEeecCCCCcceEEEEecC-CCCE
Q 018248 160 QVRVEDYG-TKKSKYITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSS-NAQW 237 (359)
Q Consensus 160 ~v~~~~~~-~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~-~~~~ 237 (359)
.|++|+.+ +.++.++..|+..|..+.|+|++++|+++|.|.. ++++|+++.+.+..+++ |...++++.|+| ...+
T Consensus 245 lVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~-~kv~DiR~mkEl~~~r~--Hkkdv~~~~WhP~~~~l 321 (464)
T KOG0284|consen 245 LVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQS-CKVFDIRTMKELFTYRG--HKKDVTSLTWHPLNESL 321 (464)
T ss_pred eeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccCCce-EEEEehhHhHHHHHhhc--chhhheeeccccccccc
Confidence 99997765 5888999999999999999999999999999999 99999999999999987 888999999999 5568
Q ss_pred EEEEcCCCcEEEEEccCCCCCCCCCccccCCCCCccCCCCCceeeeeEeeeecceEEecccceeEEeecCCcEEEeeecc
Q 018248 238 LAASSDKGTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSAISSFRFIRGVLPKYFSSKWSMAQFRLPENVQYLVGFGR 317 (359)
Q Consensus 238 l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 317 (359)
|.+|+.||.|..|.+...++... + -..|.+.|++++|+|
T Consensus 322 ftsgg~Dgsvvh~~v~~~~p~~~-----------------------------i------------~~AHd~~iwsl~~hP 360 (464)
T KOG0284|consen 322 FTSGGSDGSVVHWVVGLEEPLGE-----------------------------I------------PPAHDGEIWSLAYHP 360 (464)
T ss_pred eeeccCCCceEEEeccccccccC-----------------------------C------------Ccccccceeeeeccc
Confidence 89999999999999985543310 0 112457899999999
Q ss_pred cCCEEEEEecCCeEEEEEeC
Q 018248 318 QNNTIVIVGLDGSYYKCEFD 337 (359)
Q Consensus 318 ~~~~l~~~~~dg~i~v~~~~ 337 (359)
=|..|++|+.|.+++.|.-.
T Consensus 361 lGhil~tgsnd~t~rfw~r~ 380 (464)
T KOG0284|consen 361 LGHILATGSNDRTVRFWTRN 380 (464)
T ss_pred cceeEeecCCCcceeeeccC
Confidence 99999999999999999643
No 18
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=2.9e-35 Score=239.10 Aligned_cols=287 Identities=16% Similarity=0.238 Sum_probs=234.4
Q ss_pred CCCCCceEEEEEccCCCEEEEec-CCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEE
Q 018248 3 QPDPITIHHLALNQDHGCFATGT-ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIW 81 (359)
Q Consensus 3 ~~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iw 81 (359)
..|..-|.|+.|+|||+++|+++ |+++.+||-.+++......-..+|.+.|..++|+|+...++.++ .|.+++||
T Consensus 187 r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~S----aDkt~KIW 262 (603)
T KOG0318|consen 187 REHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVS----ADKTIKIW 262 (603)
T ss_pred cccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEec----CCceEEEE
Confidence 46888999999999999999999 99999999999888766554458999999999999999999999 78999999
Q ss_pred ECCCccEEeeeccC----cceeEEEEecceeEEE-ecCeEEEEEcccceeeeeEeccCCCceeeeeecCCCccEEEecCC
Q 018248 82 DDHENRYLGELSFR----SEVKNVRLRRDRIVVV-LNQKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAGPMVMACPGL 156 (359)
Q Consensus 82 d~~~~~~~~~~~~~----~~v~~~~~~~~~~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~ 156 (359)
|+.++++++++... .+...+-|..+..+.+ .+|.|..++...+..+..+.+|...++++..+++++. +.+ |+
T Consensus 263 dVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~--i~S-gs 339 (603)
T KOG0318|consen 263 DVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKT--IYS-GS 339 (603)
T ss_pred EeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCE--EEe-ec
Confidence 99999999998733 3344556665544444 9999999999999999999999999999999999964 554 77
Q ss_pred CCeeEEEEecCCee--------------------------------eE--------------------------------
Q 018248 157 LKGQVRVEDYGTKK--------------------------------SK-------------------------------- 172 (359)
Q Consensus 157 ~d~~v~~~~~~~~~--------------------------------~~-------------------------------- 172 (359)
.||.|.-|+..... ++
T Consensus 340 yDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~ 419 (603)
T KOG0318|consen 340 YDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGT 419 (603)
T ss_pred cCceEEEEecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCE
Confidence 89988888754100 00
Q ss_pred ----------Eeecc--------cccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcEEEEeecCCCCcceEEEEecCC
Q 018248 173 ----------YITAH--------ASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSN 234 (359)
Q Consensus 173 ----------~~~~~--------~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~ 234 (359)
.++.+ .-...+++++|++..+++|+.|+. |+||.+..++...+.....|.++|++++||||
T Consensus 420 avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgk-vhvysl~g~~l~ee~~~~~h~a~iT~vaySpd 498 (603)
T KOG0318|consen 420 AVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGK-VHVYSLSGDELKEEAKLLEHRAAITDVAYSPD 498 (603)
T ss_pred EEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecccce-EEEEEecCCcccceeeeecccCCceEEEECCC
Confidence 00001 113467899999999999999999 99999987665444333348899999999999
Q ss_pred CCEEEEEcCCCcEEEEEccCCCCCCCCCccccCCCCCccCCCCCceeeeeEeeeecceEEecccceeEEeecCCcEEEee
Q 018248 235 AQWLAASSDKGTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSAISSFRFIRGVLPKYFSSKWSMAQFRLPENVQYLVG 314 (359)
Q Consensus 235 ~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 314 (359)
+.+||++...+.+.+||+.+.+.. ... ...|...|.+++
T Consensus 499 ~~yla~~Da~rkvv~yd~~s~~~~------------------------------------~~~-----w~FHtakI~~~a 537 (603)
T KOG0318|consen 499 GAYLAAGDASRKVVLYDVASREVK------------------------------------TNR-----WAFHTAKINCVA 537 (603)
T ss_pred CcEEEEeccCCcEEEEEcccCcee------------------------------------cce-----eeeeeeeEEEEE
Confidence 999999999999999999998721 011 334556789999
Q ss_pred ecccCCEEEEEecCCeEEEEEeCC
Q 018248 315 FGRQNNTIVIVGLDGSYYKCEFDP 338 (359)
Q Consensus 315 ~s~~~~~l~~~~~dg~i~v~~~~~ 338 (359)
|+|+...+|+|+-|-.|.||+++.
T Consensus 538 WsP~n~~vATGSlDt~Viiysv~k 561 (603)
T KOG0318|consen 538 WSPNNKLVATGSLDTNVIIYSVKK 561 (603)
T ss_pred eCCCceEEEeccccceEEEEEccC
Confidence 999999999999999999999875
No 19
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=7.8e-35 Score=241.09 Aligned_cols=277 Identities=18% Similarity=0.271 Sum_probs=234.3
Q ss_pred CCCCceEEEEEccCCCEEEEec-CCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEE
Q 018248 4 PDPITIHHLALNQDHGCFATGT-ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWD 82 (359)
Q Consensus 4 ~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd 82 (359)
.|+.+|.+++|+|++++|++++ ++.+++|++.+.+... .+. +|...+..+.+.++++.+++++ .++.|++|+
T Consensus 7 ~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~--~~~-~~~~~i~~~~~~~~~~~l~~~~----~~~~i~i~~ 79 (289)
T cd00200 7 GHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLR--TLK-GHTGPVRDVAASADGTYLASGS----SDKTIRLWD 79 (289)
T ss_pred ccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEE--EEe-cCCcceeEEEECCCCCEEEEEc----CCCeEEEEE
Confidence 6899999999999999999999 9999999998765443 232 6788888888888887777776 689999999
Q ss_pred CCCccEEeeec-cCcceeEEEEecceeEEE---ecCeEEEEEcccceeeeeEeccCCCceeeeeecCCCccEEEecCCCC
Q 018248 83 DHENRYLGELS-FRSEVKNVRLRRDRIVVV---LNQKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAGPMVMACPGLLK 158 (359)
Q Consensus 83 ~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d 158 (359)
+.+++.+..+. +...+.++.|++++.+++ .++.|++||+.+++....+..+...+..++++|++. ++++ +..+
T Consensus 80 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~--~l~~-~~~~ 156 (289)
T cd00200 80 LETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGT--FVAS-SSQD 156 (289)
T ss_pred cCcccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCC--EEEE-EcCC
Confidence 99888887777 777999999999987777 499999999998888888888888889999998844 3554 5569
Q ss_pred eeEEEEecC-CeeeEEeecccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcEEEEeecCCCCcceEEEEecCCCCE
Q 018248 159 GQVRVEDYG-TKKSKYITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSNAQW 237 (359)
Q Consensus 159 ~~v~~~~~~-~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~ 237 (359)
+.+++|+.. .+....+..|...+.+++|+|+++.+++++.++. |++||+++++.+..+.. +...+.+++|+|++.+
T Consensus 157 ~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~-i~i~d~~~~~~~~~~~~--~~~~i~~~~~~~~~~~ 233 (289)
T cd00200 157 GTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGT-IKLWDLSTGKCLGTLRG--HENGVNSVAFSPDGYL 233 (289)
T ss_pred CcEEEEEccccccceeEecCccccceEEECCCcCEEEEecCCCc-EEEEECCCCceecchhh--cCCceEEEEEcCCCcE
Confidence 999998876 5667778888889999999999999999999999 99999999988888865 6679999999999999
Q ss_pred EEEEcCCCcEEEEEccCCCCCCCCCccccCCCCCccCCCCCceeeeeEeeeecceEEecccceeEEeecCCcEEEeeecc
Q 018248 238 LAASSDKGTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSAISSFRFIRGVLPKYFSSKWSMAQFRLPENVQYLVGFGR 317 (359)
Q Consensus 238 l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 317 (359)
+++++.||.|++|++.+++.. ..+..+...+..++|+|
T Consensus 234 ~~~~~~~~~i~i~~~~~~~~~------------------------------------------~~~~~~~~~i~~~~~~~ 271 (289)
T cd00200 234 LASGSEDGTIRVWDLRTGECV------------------------------------------QTLSGHTNSVTSLAWSP 271 (289)
T ss_pred EEEEcCCCcEEEEEcCCceeE------------------------------------------EEccccCCcEEEEEECC
Confidence 998888999999999875521 01223445789999999
Q ss_pred cCCEEEEEecCCeEEEEE
Q 018248 318 QNNTIVIVGLDGSYYKCE 335 (359)
Q Consensus 318 ~~~~l~~~~~dg~i~v~~ 335 (359)
+++.|++++.||.+++|+
T Consensus 272 ~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 272 DGKRLASGSADGTIRIWD 289 (289)
T ss_pred CCCEEEEecCCCeEEecC
Confidence 999999999999999995
No 20
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=1.1e-35 Score=225.54 Aligned_cols=281 Identities=15% Similarity=0.175 Sum_probs=232.7
Q ss_pred CCCCCceEEEEEccCCCEEEEec-CCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEE
Q 018248 3 QPDPITIHHLALNQDHGCFATGT-ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIW 81 (359)
Q Consensus 3 ~~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iw 81 (359)
..|++.|+.+.|+|+|.+||+|+ |..|.+|+.....+.+ ..+. ||.+.|.-+.+..+++.++.++ .|.+|+.|
T Consensus 44 ~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~-~~lk-gHsgAVM~l~~~~d~s~i~S~g----tDk~v~~w 117 (338)
T KOG0265|consen 44 PGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENF-WVLK-GHSGAVMELHGMRDGSHILSCG----TDKTVRGW 117 (338)
T ss_pred CCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccce-eeec-cccceeEeeeeccCCCEEEEec----CCceEEEE
Confidence 45899999999999999999999 9999999976433332 2333 8999999999999999988888 79999999
Q ss_pred ECCCccEEeeec-cCcceeEEEEecceeEEE----ecCeEEEEEcccceeeeeEeccCCCceeeeeecCCCccEEEecCC
Q 018248 82 DDHENRYLGELS-FRSEVKNVRLRRDRIVVV----LNQKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAGPMVMACPGL 156 (359)
Q Consensus 82 d~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~----~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~ 156 (359)
|.++|+.++.++ |..-|+.+..+.-|..++ .|+++++||+++...+++++. .-++..+.|...++. +.+ |.
T Consensus 118 D~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~-kyqltAv~f~d~s~q--v~s-gg 193 (338)
T KOG0265|consen 118 DAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFEN-KYQLTAVGFKDTSDQ--VIS-GG 193 (338)
T ss_pred ecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhcccc-ceeEEEEEecccccc--eee-cc
Confidence 999999999999 888899888666666665 899999999998888777743 334566777777776 555 66
Q ss_pred CCeeEEEEecCC-eeeEEeecccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCC----cEEEEeecCCCCcc--eEEE
Q 018248 157 LKGQVRVEDYGT-KKSKYITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDG----SLLQEMRRGAERAE--IYSL 229 (359)
Q Consensus 157 ~d~~v~~~~~~~-~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~----~~~~~~~~~~~~~~--i~~~ 229 (359)
-|+.|++|+.+. .....+.+|..+|+.+..+|+|.++.+-+.|.+ +++||++.. .++..+.++.|.-. ....
T Consensus 194 Idn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~t-vrvwd~rp~~p~~R~v~if~g~~hnfeknlL~c 272 (338)
T KOG0265|consen 194 IDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNT-VRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKC 272 (338)
T ss_pred ccCceeeeccccCcceEEeecccCceeeEEeccCCCccccccccce-EEEEEecccCCCCceEEEeecchhhhhhhccee
Confidence 799999998854 667888999999999999999999999999999 999998753 45777777655543 4567
Q ss_pred EecCCCCEEEEEcCCCcEEEEEccCCCCCCCCCccccCCCCCccCCCCCceeeeeEeeeecceEEecccceeEEeecCCc
Q 018248 230 AFSSNAQWLAASSDKGTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSAISSFRFIRGVLPKYFSSKWSMAQFRLPENV 309 (359)
Q Consensus 230 ~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (359)
+|+|+++.+.+|+.|..+++||.....-. |. +..|.+.
T Consensus 273 swsp~~~~i~ags~dr~vyvwd~~~r~~l----------------------------------yk--------lpGh~gs 310 (338)
T KOG0265|consen 273 SWSPNGTKITAGSADRFVYVWDTTSRRIL----------------------------------YK--------LPGHYGS 310 (338)
T ss_pred eccCCCCccccccccceEEEeecccccEE----------------------------------EE--------cCCccee
Confidence 89999999999999999999999886511 11 2335689
Q ss_pred EEEeeecccCCEEEEEecCCeEEEEEe
Q 018248 310 QYLVGFGRQNNTIVIVGLDGSYYKCEF 336 (359)
Q Consensus 310 v~~~~~s~~~~~l~~~~~dg~i~v~~~ 336 (359)
|+.+.|+|...+|.+++.|.+|++=.+
T Consensus 311 vn~~~Fhp~e~iils~~sdk~i~lgei 337 (338)
T KOG0265|consen 311 VNEVDFHPTEPIILSCSSDKTIYLGEI 337 (338)
T ss_pred EEEeeecCCCcEEEEeccCceeEeecc
Confidence 999999999999999999999987544
No 21
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=100.00 E-value=1.2e-35 Score=221.94 Aligned_cols=293 Identities=14% Similarity=0.149 Sum_probs=240.6
Q ss_pred CCCCCCceEEEEEccCCCEEEEec-CCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEE
Q 018248 2 NQPDPITIHHLALNQDHGCFATGT-ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMI 80 (359)
Q Consensus 2 ~~~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~i 80 (359)
-|.|..+++-+.|+.+|.+|.+++ |....+|-..+++.+ -++. ||.+.|.++++.++...++..+ .|.++++
T Consensus 6 l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerl--Gty~-GHtGavW~~Did~~s~~liTGS----AD~t~kL 78 (327)
T KOG0643|consen 6 LQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERL--GTYD-GHTGAVWCCDIDWDSKHLITGS----ADQTAKL 78 (327)
T ss_pred cccCccccceEEecCCCcEEEEecCCCCceEEEecCCcee--eeec-CCCceEEEEEecCCcceeeecc----ccceeEE
Confidence 367999999999999999999999 999999988777666 4454 9999999999999888888777 7899999
Q ss_pred EECCCccEEeeeccCcceeEEEEecceeEEE--------ecCeEEEEEcc-------cceeeeeEeccCCCceeeeeecC
Q 018248 81 WDDHENRYLGELSFRSEVKNVRLRRDRIVVV--------LNQKVYVYNFT-------DLKLVDQIETVVNPTGLCDVSQN 145 (359)
Q Consensus 81 wd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~--------~d~~i~i~d~~-------~~~~~~~~~~~~~~~~~~~~~~~ 145 (359)
||+++|+.+..++.+.+|..+.|+++|.+++ ..+.|.++|++ ..++...+..+...+..+-|.|.
T Consensus 79 WDv~tGk~la~~k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l 158 (327)
T KOG0643|consen 79 WDVETGKQLATWKTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPL 158 (327)
T ss_pred EEcCCCcEEEEeecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeeccc
Confidence 9999999999999999999999999998776 45689999997 34567777778888888999998
Q ss_pred CCccEEEecCCCCeeEEEEecCC--eeeEEeecccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcEEEEeecCCCC
Q 018248 146 AGPMVMACPGLLKGQVRVEDYGT--KKSKYITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRRGAER 223 (359)
Q Consensus 146 ~~~~~l~~~g~~d~~v~~~~~~~--~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~~~~~~~~~~~ 223 (359)
++. +++ |.++|.|.+|+... ..+...+.|...|+.++++||..++++++.|.+ -++||..+.+.++++.. .
T Consensus 159 ~~~--ii~-Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dtt-akl~D~~tl~v~Kty~t---e 231 (327)
T KOG0643|consen 159 GET--IIA-GHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTT-AKLVDVRTLEVLKTYTT---E 231 (327)
T ss_pred CCE--EEE-ecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCcc-ceeeeccceeeEEEeee---c
Confidence 875 565 88999999988775 455666889999999999999999999999999 99999999999999984 5
Q ss_pred cceEEEEecCCCCEEEEEcCCCcEEEEEccCCCCCCCCCccccCCCCCccCCCCCceeeeeEeeeecceEEec--cccee
Q 018248 224 AEIYSLAFSSNAQWLAASSDKGTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSAISSFRFIRGVLPKYFSS--KWSMA 301 (359)
Q Consensus 224 ~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 301 (359)
.+|++.+++|....++.|+.... -|+.+.... .+ .+-.+++.. +..+.
T Consensus 232 ~PvN~aaisP~~d~VilgGGqeA---~dVTTT~~r---------------------~G------KFEArFyh~i~eEEig 281 (327)
T KOG0643|consen 232 RPVNTAAISPLLDHVILGGGQEA---MDVTTTSTR---------------------AG------KFEARFYHLIFEEEIG 281 (327)
T ss_pred ccccceecccccceEEecCCcee---eeeeeeccc---------------------cc------chhhhHHHHHHHHHhc
Confidence 79999999998888777764332 222222100 00 011111111 13456
Q ss_pred EEeecCCcEEEeeecccCCEEEEEecCCeEEEEEeCC
Q 018248 302 QFRLPENVQYLVGFGRQNNTIVIVGLDGSYYKCEFDP 338 (359)
Q Consensus 302 ~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~ 338 (359)
..+.|-++|+++||+|+|+..++|++||.|++..++.
T Consensus 282 rvkGHFGPINsvAfhPdGksYsSGGEDG~VR~h~Fd~ 318 (327)
T KOG0643|consen 282 RVKGHFGPINSVAFHPDGKSYSSGGEDGYVRLHHFDS 318 (327)
T ss_pred cccccccCcceeEECCCCcccccCCCCceEEEEEecc
Confidence 6788889999999999999999999999999998875
No 22
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=3.2e-35 Score=220.88 Aligned_cols=245 Identities=9% Similarity=0.130 Sum_probs=208.0
Q ss_pred eeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEECC-----CccEEeeec-cCcceeEEEEecceeEEE---
Q 018248 41 MRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDDH-----ENRYLGELS-FRSEVKNVRLRRDRIVVV--- 111 (359)
Q Consensus 41 ~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~~-----~~~~~~~~~-~~~~v~~~~~~~~~~~~~--- 111 (359)
....++ +|.+.|..++..+....+++ +.+ .|.++.+|++. .|..++.++ |...|..+..++++++.+
T Consensus 7 l~~tl~-gh~d~Vt~la~~~~~~~~l~-sas--rDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~s 82 (315)
T KOG0279|consen 7 LRGTLE-GHTDWVTALAIKIKNSDILV-SAS--RDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSAS 82 (315)
T ss_pred eeeeec-CCCceEEEEEeecCCCceEE-Ecc--cceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEecc
Confidence 334555 99999999998877433333 222 68999999865 366788888 999999999999999888
Q ss_pred ecCeEEEEEcccceeeeeEeccCCCceeeeeecCCCccEEEecCCCCeeEEEEecCCeeeEEeecc--cccccEEEEccC
Q 018248 112 LNQKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAGPMVMACPGLLKGQVRVEDYGTKKSKYITAH--ASRIASIAMTLD 189 (359)
Q Consensus 112 ~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~v~~~~~~~~~~~~~~~~--~~~i~~~~~s~~ 189 (359)
.|+.+++||+.+++..+.|.+|...+..++++++... +++ |+.|.++++|+.-+.+..++..+ ...|.|+.|+|+
T Consensus 83 wD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~q--ivS-GSrDkTiklwnt~g~ck~t~~~~~~~~WVscvrfsP~ 159 (315)
T KOG0279|consen 83 WDGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQ--IVS-GSRDKTIKLWNTLGVCKYTIHEDSHREWVSCVRFSPN 159 (315)
T ss_pred ccceEEEEEecCCcEEEEEEecCCceEEEEecCCCce--eec-CCCcceeeeeeecccEEEEEecCCCcCcEEEEEEcCC
Confidence 9999999999999999999999999999999999887 665 99999999999998887777655 789999999998
Q ss_pred --CcEEEEEeCCCCeEEEEEcCCCcEEEEeecCCCCcceEEEEecCCCCEEEEEcCCCcEEEEEccCCCCCCCCCccccC
Q 018248 190 --GRFVATASSKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSNAQWLAASSDKGTVHVFGLKVDSGSPGTSKLHSA 267 (359)
Q Consensus 190 --~~~l~~~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~ 267 (359)
..+|++++.|++ |++||+++.+....+.+ |.+.++.+++||||..+++|+.||.+.+||++.++...
T Consensus 160 ~~~p~Ivs~s~Dkt-vKvWnl~~~~l~~~~~g--h~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~ly-------- 228 (315)
T KOG0279|consen 160 ESNPIIVSASWDKT-VKVWNLRNCQLRTTFIG--HSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLY-------- 228 (315)
T ss_pred CCCcEEEEccCCce-EEEEccCCcchhhcccc--ccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeE--------
Confidence 679999999999 99999999999999987 78899999999999999999999999999999987321
Q ss_pred CCCCccCCCCCceeeeeEeeeecceEEecccceeEEeecCCcEEEeeecccCCEEEEEecCCeEEEEEeCCC
Q 018248 268 SEPNLSSKNSSAISSFRFIRGVLPKYFSSKWSMAQFRLPENVQYLVGFGRQNNTIVIVGLDGSYYKCEFDPM 339 (359)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~~ 339 (359)
++ -+...|++++|+|+...|+.+.+.+ |+||++++.
T Consensus 229 -------------------------sl----------~a~~~v~sl~fspnrywL~~at~~s-IkIwdl~~~ 264 (315)
T KOG0279|consen 229 -------------------------SL----------EAFDIVNSLCFSPNRYWLCAATATS-IKIWDLESK 264 (315)
T ss_pred -------------------------ec----------cCCCeEeeEEecCCceeEeeccCCc-eEEEeccch
Confidence 11 1236789999999966666666554 999999874
No 23
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2e-36 Score=239.04 Aligned_cols=284 Identities=10% Similarity=0.132 Sum_probs=235.0
Q ss_pred CCCCCceEEEEEccCCCEEEEec-CCceEEEEcCCCcc-eeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEE
Q 018248 3 QPDPITIHHLALNQDHGCFATGT-ETGFRVYLSDPYKP-IMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMI 80 (359)
Q Consensus 3 ~~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~i 80 (359)
+.|.++|+-+.||++|++||+++ |.+.-+|.+..... ....++. ||..+|..+.|+|+.++++.++ .+..+++
T Consensus 221 ~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlv-gh~~~V~yi~wSPDdryLlaCg----~~e~~~l 295 (519)
T KOG0293|consen 221 QDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLV-GHSQPVSYIMWSPDDRYLLACG----FDEVLSL 295 (519)
T ss_pred hhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeee-cccCceEEEEECCCCCeEEecC----chHheee
Confidence 57999999999999999999999 99999999864433 4445665 9999999999999999999888 6788999
Q ss_pred EECCCccEEeeecc--CcceeEEEEecceeEEE---ecCeEEEEEcccceeeeeEeccC-CCceeeeeecCCCccEEEec
Q 018248 81 WDDHENRYLGELSF--RSEVKNVRLRRDRIVVV---LNQKVYVYNFTDLKLVDQIETVV-NPTGLCDVSQNAGPMVMACP 154 (359)
Q Consensus 81 wd~~~~~~~~~~~~--~~~v~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~ 154 (359)
||+.+|.....+.+ ...+.+.+|.|||..++ .|++|..||+ +|+.+...++-. ..+..+++++|++.+++++
T Consensus 296 wDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdl-Dgn~~~~W~gvr~~~v~dlait~Dgk~vl~v~- 373 (519)
T KOG0293|consen 296 WDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDL-DGNILGNWEGVRDPKVHDLAITYDGKYVLLVT- 373 (519)
T ss_pred ccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecC-CcchhhcccccccceeEEEEEcCCCcEEEEEe-
Confidence 99999999999884 48899999999998777 8999999998 555555555433 3477899999999866655
Q ss_pred CCCCeeEEEEecCCeeeEEeecccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcEEEEeecCCCCcceEEEEecC-
Q 018248 155 GLLKGQVRVEDYGTKKSKYITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSS- 233 (359)
Q Consensus 155 g~~d~~v~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~- 233 (359)
.|..+++++.....-+.+..-..+|+++++|.|++++.+-=.+.. |.+||++....++.+.++.....+-.-+|.-
T Consensus 374 --~d~~i~l~~~e~~~dr~lise~~~its~~iS~d~k~~LvnL~~qe-i~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~ 450 (519)
T KOG0293|consen 374 --VDKKIRLYNREARVDRGLISEEQPITSFSISKDGKLALVNLQDQE-IHLWDLEENKLVRKYFGHKQGHFIIRSCFGGG 450 (519)
T ss_pred --cccceeeechhhhhhhccccccCceeEEEEcCCCcEEEEEcccCe-eEEeecchhhHHHHhhcccccceEEEeccCCC
Confidence 588999988776655545555678999999999999998888888 9999999888888888755445566666754
Q ss_pred CCCEEEEEcCCCcEEEEEccCCCCCCCCCccccCCCCCccCCCCCceeeeeEeeeecceEEecccceeEEeecCCcEEEe
Q 018248 234 NAQWLAASSDKGTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSAISSFRFIRGVLPKYFSSKWSMAQFRLPENVQYLV 313 (359)
Q Consensus 234 ~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 313 (359)
+..++++|++|+.|+||+..+++.. +.+..|...|+++
T Consensus 451 ~~~fiaSGSED~kvyIWhr~sgkll------------------------------------------~~LsGHs~~vNcV 488 (519)
T KOG0293|consen 451 NDKFIASGSEDSKVYIWHRISGKLL------------------------------------------AVLSGHSKTVNCV 488 (519)
T ss_pred CcceEEecCCCceEEEEEccCCcee------------------------------------------EeecCCcceeeEE
Confidence 5589999999999999999998732 2245567889999
Q ss_pred eecc-cCCEEEEEecCCeEEEEEeCC
Q 018248 314 GFGR-QNNTIVIVGLDGSYYKCEFDP 338 (359)
Q Consensus 314 ~~s~-~~~~l~~~~~dg~i~v~~~~~ 338 (359)
+|+| +..++|+|++||+|+||...+
T Consensus 489 swNP~~p~m~ASasDDgtIRIWg~~~ 514 (519)
T KOG0293|consen 489 SWNPADPEMFASASDDGTIRIWGPSD 514 (519)
T ss_pred ecCCCCHHHhhccCCCCeEEEecCCc
Confidence 9999 457899999999999997764
No 24
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=6.1e-35 Score=253.37 Aligned_cols=284 Identities=15% Similarity=0.221 Sum_probs=239.3
Q ss_pred CCCCCceEEEEEccCCCEEEEec-CCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEE
Q 018248 3 QPDPITIHHLALNQDHGCFATGT-ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIW 81 (359)
Q Consensus 3 ~~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iw 81 (359)
..+...|.++.|+++|+.+++++ ++.+++|+....+......+. +|...|..++|++++..++.++ .|++|++|
T Consensus 156 ~~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~-~h~~~v~~~~fs~d~~~l~s~s----~D~tiriw 230 (456)
T KOG0266|consen 156 GHECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELS-GHTRGVSDVAFSPDGSYLLSGS----DDKTLRIW 230 (456)
T ss_pred ccccCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhcccc-ccccceeeeEECCCCcEEEEec----CCceEEEe
Confidence 34578999999999999999998 999999999765522234443 8999999999999999777776 79999999
Q ss_pred EC-CCccEEeeec-cCcceeEEEEecceeEEE---ecCeEEEEEcccceeeeeEeccCCCceeeeeecCCCccEEEecCC
Q 018248 82 DD-HENRYLGELS-FRSEVKNVRLRRDRIVVV---LNQKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAGPMVMACPGL 156 (359)
Q Consensus 82 d~-~~~~~~~~~~-~~~~v~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~ 156 (359)
|+ ..+..++.++ |...|++++|+|++++++ .|++|++||+++++++..+..|...+..+++++++.. +++ ++
T Consensus 231 d~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~--l~s-~s 307 (456)
T KOG0266|consen 231 DLKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNL--LVS-AS 307 (456)
T ss_pred eccCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCE--EEE-cC
Confidence 99 5558889998 999999999999997777 8999999999999999999999999999999999875 555 56
Q ss_pred CCeeEEEEecCCee---eEEeeccccc--ccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcEEEEeecCCCC-cceEEEE
Q 018248 157 LKGQVRVEDYGTKK---SKYITAHASR--IASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRRGAER-AEIYSLA 230 (359)
Q Consensus 157 ~d~~v~~~~~~~~~---~~~~~~~~~~--i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~~~~~~~~~~~-~~i~~~~ 230 (359)
.|+.|++|+..... ...+..+... +++++|+|++.++++++.|+. +++||+..+..+..+..+... ..+.+..
T Consensus 308 ~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~-~~~w~l~~~~~~~~~~~~~~~~~~~~~~~ 386 (456)
T KOG0266|consen 308 YDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRT-LKLWDLRSGKSVGTYTGHSNLVRCIFSPT 386 (456)
T ss_pred CCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCe-EEEEEccCCcceeeecccCCcceeEeccc
Confidence 79999999988765 4566666555 999999999999999999999 999999999999999874322 2455666
Q ss_pred ecCCCCEEEEEcCCCcEEEEEccCCCCCCCCCccccCCCCCccCCCCCceeeeeEeeeecceEEecccceeEEeec-CCc
Q 018248 231 FSSNAQWLAASSDKGTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSAISSFRFIRGVLPKYFSSKWSMAQFRLP-ENV 309 (359)
Q Consensus 231 ~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 309 (359)
.++.++++++++.|+.|++|++.++.... .+..+ ...
T Consensus 387 ~~~~~~~i~sg~~d~~v~~~~~~s~~~~~------------------------------------------~l~~h~~~~ 424 (456)
T KOG0266|consen 387 LSTGGKLIYSGSEDGSVYVWDSSSGGILQ------------------------------------------RLEGHSKAA 424 (456)
T ss_pred ccCCCCeEEEEeCCceEEEEeCCccchhh------------------------------------------hhcCCCCCc
Confidence 78899999999999999999999865321 12233 457
Q ss_pred EEEeeecccCCEEEEEe--cCCeEEEEEeC
Q 018248 310 QYLVGFGRQNNTIVIVG--LDGSYYKCEFD 337 (359)
Q Consensus 310 v~~~~~s~~~~~l~~~~--~dg~i~v~~~~ 337 (359)
+..++++|..+++++++ .|+.+++|..+
T Consensus 425 ~~~~~~~~~~~~~~s~s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 425 VSDLSSHPTENLIASSSFEGDGLIRLWKYD 454 (456)
T ss_pred eeccccCCCcCeeeecCcCCCceEEEecCC
Confidence 78899999999999999 69999999764
No 25
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=2.9e-34 Score=242.74 Aligned_cols=322 Identities=16% Similarity=0.170 Sum_probs=255.0
Q ss_pred CCCCceEEEEEccCCCEEEEec-CCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEE
Q 018248 4 PDPITIHHLALNQDHGCFATGT-ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWD 82 (359)
Q Consensus 4 ~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd 82 (359)
.|-..|.++.|+.|.++|++|+ |-.+++|.++..+......+. ||.+.|...-+..+...+..++ .||.+.+|.
T Consensus 143 g~fddi~si~Ws~DSr~l~~gsrD~s~rl~~v~~~k~~~~~~l~-gHkd~VvacfF~~~~~~l~tvs----kdG~l~~W~ 217 (893)
T KOG0291|consen 143 GHFDDITSIDWSDDSRLLVTGSRDLSARLFGVDGNKNLFTYALN-GHKDYVVACFFGANSLDLYTVS----KDGALFVWT 217 (893)
T ss_pred CCccceeEEEeccCCceEEeccccceEEEEEeccccccceEecc-CCCcceEEEEeccCcceEEEEe----cCceEEEEE
Confidence 4678899999999999999999 999999999987776556666 9999998888887888888888 899999997
Q ss_pred CCC-----------------------ccE-----E------eeec-cCcceeEEEEecceeEEE---ecCeEEEEEcccc
Q 018248 83 DHE-----------------------NRY-----L------GELS-FRSEVKNVRLRRDRIVVV---LNQKVYVYNFTDL 124 (359)
Q Consensus 83 ~~~-----------------------~~~-----~------~~~~-~~~~v~~~~~~~~~~~~~---~d~~i~i~d~~~~ 124 (359)
... ++. . .-+. ....+++.+|++...+++ ..|...+|++..-
T Consensus 218 ~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f 297 (893)
T KOG0291|consen 218 CDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGTNLLVVGFSSGEFGLYELPDF 297 (893)
T ss_pred ecCCCcccccccccccccccccccccchhhhcceEEEEEEeeeecccccceeeeeccCCceEEEEEecCCeeEEEecCCc
Confidence 651 111 0 0011 236789999999988887 8899999999999
Q ss_pred eeeeeEeccCCCceeeeeecCCCccEEEecCCCCeeEEEEecCCe-eeEEeecccccccEEEEccCCcEEEEEeCCCCeE
Q 018248 125 KLVDQIETVVNPTGLCDVSQNAGPMVMACPGLLKGQVRVEDYGTK-KSKYITAHASRIASIAMTLDGRFVATASSKGTLI 203 (359)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~v~~~~~~~~-~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~~i 203 (359)
.+++.+.....++..++|+..|+. +|..++.-|.+-||....+ -+...++|-..+++++++|||+++|+|++||. |
T Consensus 298 ~lih~LSis~~~I~t~~~N~tGDW--iA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgK-V 374 (893)
T KOG0291|consen 298 NLIHSLSISDQKILTVSFNSTGDW--IAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAEDGK-V 374 (893)
T ss_pred eEEEEeecccceeeEEEecccCCE--EEEcCCccceEEEEEeeccceeeeccccccceeeEEECCCCcEEEeccCCCc-E
Confidence 999999988888999999888887 6665556789999888764 35556889999999999999999999999999 9
Q ss_pred EEEEcCCCcEEEEeecCCCCcceEEEEecCCCCEEEEEcCCCcEEEEEccCCCCCCCC-----CccccCCCCCccCCCCC
Q 018248 204 RVFNTMDGSLLQEMRRGAERAEIYSLAFSSNAQWLAASSDKGTVHVFGLKVDSGSPGT-----SKLHSASEPNLSSKNSS 278 (359)
Q Consensus 204 ~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~ 278 (359)
+|||..++-++.+|.. |.+.|+.+.|+.+|+.|++++.||+|+.||+.....-... .+..+.+..|.+...-+
T Consensus 375 KvWn~~SgfC~vTFte--Hts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~A 452 (893)
T KOG0291|consen 375 KVWNTQSGFCFVTFTE--HTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCA 452 (893)
T ss_pred EEEeccCceEEEEecc--CCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEe
Confidence 9999999999999987 8899999999999999999999999999999988765433 33334444443421110
Q ss_pred -ceeeeeEeeeecceEEecccceeEEeecCCcEEEeeecccCCEEEEEecCCeEEEEEeCCC
Q 018248 279 -AISSFRFIRGVLPKYFSSKWSMAQFRLPENVQYLVGFGRQNNTIVIVGLDGSYYKCEFDPM 339 (359)
Q Consensus 279 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~~ 339 (359)
....+... .| ..+.......+..|+++|.+++|+|++..|++++.|.+|++|++-..
T Consensus 453 G~~d~F~If-vW---S~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s 510 (893)
T KOG0291|consen 453 GAQDSFEIF-VW---SVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSS 510 (893)
T ss_pred eccceEEEE-EE---EeecCeeeehhcCCCCcceeeEEccccCeEEeccccceEEEEEeecc
Confidence 11111100 00 11222334447788999999999999999999999999999998654
No 26
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=7.1e-35 Score=220.43 Aligned_cols=235 Identities=15% Similarity=0.181 Sum_probs=205.8
Q ss_pred CCCceEEEEEccCCCEEEEec-CCceEEEEcCCC----cceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEE
Q 018248 5 DPITIHHLALNQDHGCFATGT-ETGFRVYLSDPY----KPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVM 79 (359)
Q Consensus 5 h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~----~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~ 79 (359)
....|..++|+|.|+++|+|+ |+...||++.+. .....+.+. ||.+-+.+..+.. .+.++..+ .|.+..
T Consensus 96 ~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~-gHtgylScC~f~d-D~~ilT~S----GD~TCa 169 (343)
T KOG0286|consen 96 PSSWVMTCAYSPSGNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELA-GHTGYLSCCRFLD-DNHILTGS----GDMTCA 169 (343)
T ss_pred CceeEEEEEECCCCCeEEecCcCceeEEEecccccccccceeeeeec-CccceeEEEEEcC-CCceEecC----CCceEE
Confidence 356799999999999999999 999999999843 224445566 9999999999876 45555565 489999
Q ss_pred EEECCCccEEeeec-cCcceeEEEEec-ceeEEE---ecCeEEEEEcccceeeeeEeccCCCceeeeeecCCCccEEEec
Q 018248 80 IWDDHENRYLGELS-FRSEVKNVRLRR-DRIVVV---LNQKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAGPMVMACP 154 (359)
Q Consensus 80 iwd~~~~~~~~~~~-~~~~v~~~~~~~-~~~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 154 (359)
+||+++++.+..+. |.+.|.++.++| +++.++ .|+..++||++.+...+.|.+|...++.+.|.|++.. +++
T Consensus 170 lWDie~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~a--fat- 246 (343)
T KOG0286|consen 170 LWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDA--FAT- 246 (343)
T ss_pred EEEcccceEEEEecCCcccEEEEecCCCCCCeEEecccccceeeeeccCcceeEeecccccccceEEEccCCCe--eee-
Confidence 99999999999998 999999999999 777777 8999999999999999999999999999999999976 666
Q ss_pred CCCCeeEEEEecCC-eeeEEee--cccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcEEEEeecCCCCcceEEEEe
Q 018248 155 GLLKGQVRVEDYGT-KKSKYIT--AHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAF 231 (359)
Q Consensus 155 g~~d~~v~~~~~~~-~~~~~~~--~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~ 231 (359)
|+.|+++++++.+. +.+..+. ....+|++++||..|++|++|..|.. +.+||.-.++.+..+.+ |...|.++..
T Consensus 247 GSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~-c~vWDtlk~e~vg~L~G--HeNRvScl~~ 323 (343)
T KOG0286|consen 247 GSDDATCRLYDLRADQELAVYSHDSIICGITSVAFSKSGRLLFAGYDDFT-CNVWDTLKGERVGVLAG--HENRVSCLGV 323 (343)
T ss_pred cCCCceeEEEeecCCcEEeeeccCcccCCceeEEEcccccEEEeeecCCc-eeEeeccccceEEEeec--cCCeeEEEEE
Confidence 99999999977766 4444443 22458999999999999999999999 99999999999999987 8899999999
Q ss_pred cCCCCEEEEEcCCCcEEEEE
Q 018248 232 SSNAQWLAASSDKGTVHVFG 251 (359)
Q Consensus 232 s~~~~~l~~~~~dg~i~iw~ 251 (359)
+|||.-+++|+.|.+++||.
T Consensus 324 s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 324 SPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred CCCCcEEEecchhHheeecC
Confidence 99999999999999999994
No 27
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=7.1e-35 Score=246.39 Aligned_cols=295 Identities=13% Similarity=0.213 Sum_probs=230.2
Q ss_pred CCceEEEEEccCCCEEEEec--CCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEEC
Q 018248 6 PITIHHLALNQDHGCFATGT--ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDD 83 (359)
Q Consensus 6 ~~~v~~~~~s~~g~~l~~~~--d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~ 83 (359)
..+|..++|+..|..||.|+ =|.+-||++.....++.+. ||...+.+++.+|++..++..+ .||+|+|||.
T Consensus 307 ~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQ---gH~~~i~~l~YSpDgq~iaTG~----eDgKVKvWn~ 379 (893)
T KOG0291|consen 307 DQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQ---GHSDRITSLAYSPDGQLIATGA----EDGKVKVWNT 379 (893)
T ss_pred cceeeEEEecccCCEEEEcCCccceEEEEEeeccceeeecc---ccccceeeEEECCCCcEEEecc----CCCcEEEEec
Confidence 46899999999999999999 3689999998755554444 8999999999999999888877 8999999999
Q ss_pred CCccEEeeec-cCcceeEEEEecceeEEE---ecCeEEEEEcccceeeeeEeccCCCce--eeeeecCCCccEEEecCCC
Q 018248 84 HENRYLGELS-FRSEVKNVRLRRDRIVVV---LNQKVYVYNFTDLKLVDQIETVVNPTG--LCDVSQNAGPMVMACPGLL 157 (359)
Q Consensus 84 ~~~~~~~~~~-~~~~v~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~g~~ 157 (359)
..+-++.++. |...|+.+.|+..++.++ .||+|+.||+...+..+++..+ .++. +++..|.++ ++++ |+.
T Consensus 380 ~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P-~p~QfscvavD~sGe--lV~A-G~~ 455 (893)
T KOG0291|consen 380 QSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSP-EPIQFSCVAVDPSGE--LVCA-GAQ 455 (893)
T ss_pred cCceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCC-CceeeeEEEEcCCCC--EEEe-ecc
Confidence 9999999998 999999999999998887 8999999999999888888653 3444 445555554 3444 554
Q ss_pred C-eeEEEEecC-CeeeEEeecccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCC-cEEEEeecCCCCcceEEEEecCC
Q 018248 158 K-GQVRVEDYG-TKKSKYITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDG-SLLQEMRRGAERAEIYSLAFSSN 234 (359)
Q Consensus 158 d-~~v~~~~~~-~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~-~~~~~~~~~~~~~~i~~~~~s~~ 234 (359)
| =.|.+|... ++.+..+.+|.++|.+++|+|++..|+++|.|.+ |++||+-.. ....++. ....+..++|+||
T Consensus 456 d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkT-VRiW~if~s~~~vEtl~---i~sdvl~vsfrPd 531 (893)
T KOG0291|consen 456 DSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKT-VRIWDIFSSSGTVETLE---IRSDVLAVSFRPD 531 (893)
T ss_pred ceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccce-EEEEEeeccCceeeeEe---eccceeEEEEcCC
Confidence 4 467778876 4667778999999999999999999999999999 999998654 3344454 4568999999999
Q ss_pred CCEEEEEcCCCcEEEEEccCCCCCCCCCccccCCCCCccCCCCCceeeeeEeeee-cceEEecccceeEEeecCCcEEEe
Q 018248 235 AQWLAASSDKGTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSAISSFRFIRGV-LPKYFSSKWSMAQFRLPENVQYLV 313 (359)
Q Consensus 235 ~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~ 313 (359)
|+.|++++.||.|.+||.+...+....+.... ...+. ....+... -.......+.+
T Consensus 532 G~elaVaTldgqItf~d~~~~~q~~~IdgrkD------------------~~~gR~~~D~~ta~-----~sa~~K~Ftti 588 (893)
T KOG0291|consen 532 GKELAVATLDGQITFFDIKEAVQVGSIDGRKD------------------LSGGRKETDRITAE-----NSAKGKTFTTI 588 (893)
T ss_pred CCeEEEEEecceEEEEEhhhceeeccccchhh------------------ccccccccceeehh-----hcccCCceEEE
Confidence 99999999999999999988764311000000 00000 00000000 01112467889
Q ss_pred eecccCCEEEEEecCCeEEEEEeCC
Q 018248 314 GFGRQNNTIVIVGLDGSYYKCEFDP 338 (359)
Q Consensus 314 ~~s~~~~~l~~~~~dg~i~v~~~~~ 338 (359)
.+|+||..|++||....|.+|+++.
T Consensus 589 ~ySaDG~~IlAgG~sn~iCiY~v~~ 613 (893)
T KOG0291|consen 589 CYSADGKCILAGGESNSICIYDVPE 613 (893)
T ss_pred EEcCCCCEEEecCCcccEEEEECch
Confidence 9999999999999999999999976
No 28
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=100.00 E-value=4.5e-35 Score=218.12 Aligned_cols=271 Identities=15% Similarity=0.208 Sum_probs=222.7
Q ss_pred CCCCCceEEEEEccCCCEEEEec-CCceEEEEcCCCcceeeeecccCCCCceeEEEEecc-CCEEEEEecCCCCCCeEEE
Q 018248 3 QPDPITIHHLALNQDHGCFATGT-ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFR-SNIICLVNSGPHQSNKVMI 80 (359)
Q Consensus 3 ~~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~~~~~~~~~~~d~~i~i 80 (359)
+.|...|.+++|+.+|..|++|+ |+++.+|+++..+........ ||.+.|..++|.+. ++.++.++ .|.+|++
T Consensus 17 ~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~-gh~~svdql~w~~~~~d~~atas----~dk~ir~ 91 (313)
T KOG1407|consen 17 QGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYR-GHTDSVDQLCWDPKHPDLFATAS----GDKTIRI 91 (313)
T ss_pred hhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhccc-CCCcchhhheeCCCCCcceEEec----CCceEEE
Confidence 56889999999999999999999 999999999977555444444 88888888888864 45666666 5799999
Q ss_pred EECCCccEEeeeccCcceeEEEEecceeEEE---ecCeEEEEEcccceeeeeEeccCCCceeeeeecCCCccEEEecCCC
Q 018248 81 WDDHENRYLGELSFRSEVKNVRLRRDRIVVV---LNQKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAGPMVMACPGLL 157 (359)
Q Consensus 81 wd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~ 157 (359)
||+.++++.........-.-+.|+|+|.+++ .|..|...|.++.+.....+. ...+.-++|+.+++ +++++.|
T Consensus 92 wd~r~~k~~~~i~~~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~-~~e~ne~~w~~~nd-~Fflt~G-- 167 (313)
T KOG1407|consen 92 WDIRSGKCTARIETKGENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQF-KFEVNEISWNNSND-LFFLTNG-- 167 (313)
T ss_pred EEeccCcEEEEeeccCcceEEEEcCCCCEEEEecCcccEEEEEecccceeehhcc-cceeeeeeecCCCC-EEEEecC--
Confidence 9999999999998666666789999998887 888999999988877666543 23445677775444 4555433
Q ss_pred CeeEEE-EecCCeeeEEeecccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcEEEEeecCCCCcceEEEEecCCCC
Q 018248 158 KGQVRV-EDYGTKKSKYITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSNAQ 236 (359)
Q Consensus 158 d~~v~~-~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~ 236 (359)
.|.|.| --...+++..+++|.....|+.|+|+|+++|+|+.|.. +.+||+...-+++.+.. +.-+|..+.||.||+
T Consensus 168 lG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAl-vSLWD~~ELiC~R~isR--ldwpVRTlSFS~dg~ 244 (313)
T KOG1407|consen 168 LGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADAL-VSLWDVDELICERCISR--LDWPVRTLSFSHDGR 244 (313)
T ss_pred CceEEEEeccccccccccccCCcceEEEEECCCCceEeeccccce-eeccChhHhhhheeecc--ccCceEEEEeccCcc
Confidence 688888 33366899999999999999999999999999999998 99999999888888887 667999999999999
Q ss_pred EEEEEcCCCcEEEEEccCCCCCCCCCccccCCCCCccCCCCCceeeeeEeeeecceEEecccceeEEeecCCcEEEeeec
Q 018248 237 WLAASSDKGTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSAISSFRFIRGVLPKYFSSKWSMAQFRLPENVQYLVGFG 316 (359)
Q Consensus 237 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 316 (359)
+||+|++|..|-|=+++++... ++.. ..++...++|+
T Consensus 245 ~lASaSEDh~IDIA~vetGd~~-----------------------------------~eI~--------~~~~t~tVAWH 281 (313)
T KOG1407|consen 245 MLASASEDHFIDIAEVETGDRV-----------------------------------WEIP--------CEGPTFTVAWH 281 (313)
T ss_pred eeeccCccceEEeEecccCCeE-----------------------------------EEee--------ccCCceeEEec
Confidence 9999999999999999998732 1111 23567899999
Q ss_pred ccCCEEEEEecC
Q 018248 317 RQNNTIVIVGLD 328 (359)
Q Consensus 317 ~~~~~l~~~~~d 328 (359)
|....||.+++|
T Consensus 282 Pk~~LLAyA~dd 293 (313)
T KOG1407|consen 282 PKRPLLAYACDD 293 (313)
T ss_pred CCCceeeEEecC
Confidence 999999998874
No 29
>PLN00181 protein SPA1-RELATED; Provisional
Probab=100.00 E-value=1.1e-33 Score=263.14 Aligned_cols=289 Identities=13% Similarity=0.181 Sum_probs=221.6
Q ss_pred CCCCceEEEEEccCCCEEEEec-CCceEEEEcCCCc----c--eeeeecccCCCCceeEEEEecc-CCEEEEEecCCCCC
Q 018248 4 PDPITIHHLALNQDHGCFATGT-ETGFRVYLSDPYK----P--IMRRDFDRNPRGGTQLVSMLFR-SNIICLVNSGPHQS 75 (359)
Q Consensus 4 ~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~----~--~~~~~~~~~h~~~v~~~~~~~~-~~~~~~~~~~~~~d 75 (359)
.|.+.|.+++|+|+|++||+|+ |+.|+||+.+... . .....+ .+...+..++|.+. +..++.++ .|
T Consensus 481 ~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~--~~~~~v~~l~~~~~~~~~las~~----~D 554 (793)
T PLN00181 481 NSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVEL--ASRSKLSGICWNSYIKSQVASSN----FE 554 (793)
T ss_pred CCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEe--cccCceeeEEeccCCCCEEEEEe----CC
Confidence 4788999999999999999999 9999999976321 0 111222 23456777888754 45555555 68
Q ss_pred CeEEEEECCCccEEeeec-cCcceeEEEEec-ceeEEE---ecCeEEEEEcccceeeeeEeccCCCceeeeeecCCCccE
Q 018248 76 NKVMIWDDHENRYLGELS-FRSEVKNVRLRR-DRIVVV---LNQKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAGPMV 150 (359)
Q Consensus 76 ~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~-~~~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (359)
+.|++||+.+++.+..+. |...|.+++|+| ++.+++ .|+.|++||+++++.+..+..+ ..+.++.|.+... .+
T Consensus 555 g~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~-~~v~~v~~~~~~g-~~ 632 (793)
T PLN00181 555 GVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTK-ANICCVQFPSESG-RS 632 (793)
T ss_pred CeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecC-CCeEEEEEeCCCC-CE
Confidence 999999999999888887 999999999997 666665 7999999999988888887754 4567777754332 33
Q ss_pred EEecCCCCeeEEEEecCCe--eeEEeecccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCC------cEEEEeecCCC
Q 018248 151 MACPGLLKGQVRVEDYGTK--KSKYITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDG------SLLQEMRRGAE 222 (359)
Q Consensus 151 l~~~g~~d~~v~~~~~~~~--~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~------~~~~~~~~~~~ 222 (359)
+++ |+.|+.|++|+.+.. ....+.+|...|.++.|. ++.+|++++.|+. |++||++.+ +.+..+.+ |
T Consensus 633 lat-gs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~-ikiWd~~~~~~~~~~~~l~~~~g--h 707 (793)
T PLN00181 633 LAF-GSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNT-LKLWDLSMSISGINETPLHSFMG--H 707 (793)
T ss_pred EEE-EeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEECCCE-EEEEeCCCCccccCCcceEEEcC--C
Confidence 565 678999999998653 456778999999999997 7889999999999 999999743 56777776 6
Q ss_pred CcceEEEEecCCCCEEEEEcCCCcEEEEEccCCCCCCCCCccccCCCCCccCCCCCceeeeeEeeeecceEEeccccee-
Q 018248 223 RAEIYSLAFSSNAQWLAASSDKGTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSAISSFRFIRGVLPKYFSSKWSMA- 301 (359)
Q Consensus 223 ~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 301 (359)
...+..++|+|++++|++|+.|+.|++|+.....+.. .+. +.......
T Consensus 708 ~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~----------------------s~~---------~~~~~~~~~ 756 (793)
T PLN00181 708 TNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVL----------------------SYK---------FKTIDPVSG 756 (793)
T ss_pred CCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceE----------------------EEe---------cccCCcccc
Confidence 7789999999999999999999999999987654210 000 00000000
Q ss_pred -EEeecCCcEEEeeecccCCEEEEEecCCeEEEEEe
Q 018248 302 -QFRLPENVQYLVGFGRQNNTIVIVGLDGSYYKCEF 336 (359)
Q Consensus 302 -~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~ 336 (359)
....+...|.+++|+|++..|++|+.||.|++|++
T Consensus 757 ~~~~~~~~~V~~v~ws~~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 757 LEVDDASQFISSVCWRGQSSTLVAANSTGNIKILEM 792 (793)
T ss_pred cccCCCCcEEEEEEEcCCCCeEEEecCCCcEEEEec
Confidence 01112357899999999999999999999999976
No 30
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=6.4e-33 Score=225.60 Aligned_cols=250 Identities=16% Similarity=0.255 Sum_probs=209.3
Q ss_pred CCCCCceEEEEEccCCCEEEEec-CCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEE
Q 018248 3 QPDPITIHHLALNQDHGCFATGT-ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIW 81 (359)
Q Consensus 3 ~~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iw 81 (359)
.+|..+++-..|||.|.++|+|. .|.||||+....+.++..+++ .-.++|..++|.+++..++.++.|+..-|.+.+|
T Consensus 56 tEH~~~vtVAkySPsG~yiASGD~sG~vRIWdtt~~~hiLKnef~-v~aG~I~Di~Wd~ds~RI~avGEGrerfg~~F~~ 134 (603)
T KOG0318|consen 56 TEHAHQVTVAKYSPSGFYIASGDVSGKVRIWDTTQKEHILKNEFQ-VLAGPIKDISWDFDSKRIAAVGEGRERFGHVFLW 134 (603)
T ss_pred ccccceeEEEEeCCCceEEeecCCcCcEEEEeccCcceeeeeeee-ecccccccceeCCCCcEEEEEecCccceeEEEEe
Confidence 47899999999999999999999 999999999876666666655 5589999999999999999999886433555566
Q ss_pred ECCCccEEeeec-cCcceeEEEEecceeEEE----ecCeEEEEEcccceeeeeEeccCCCceeeeeecCCCccEEEecCC
Q 018248 82 DDHENRYLGELS-FRSEVKNVRLRRDRIVVV----LNQKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAGPMVMACPGL 156 (359)
Q Consensus 82 d~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~----~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~ 156 (359)
| +|..+.++. |...|.++.|-|...+-+ .|+.|.+|+-..-+--.++..|...+.++.++|++.. ++++|
T Consensus 135 D--SG~SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~--Fat~g- 209 (603)
T KOG0318|consen 135 D--SGNSVGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSR--FATAG- 209 (603)
T ss_pred c--CCCccceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCe--EEEec-
Confidence 5 788888888 999999999999875443 8999999997666666777889999999999999876 66644
Q ss_pred CCeeEEEE-ecCCeeeEEee---cccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcEEEEeec-------------
Q 018248 157 LKGQVRVE-DYGTKKSKYIT---AHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRR------------- 219 (359)
Q Consensus 157 ~d~~v~~~-~~~~~~~~~~~---~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~~~~~~~------------- 219 (359)
.||++.++ -.++..+..+. +|++.|.+++|+||++.+++++.|.+ ++|||+.+.++++++..
T Consensus 210 sDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt-~KIWdVs~~slv~t~~~~~~v~dqqvG~lW 288 (603)
T KOG0318|consen 210 SDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKT-IKIWDVSTNSLVSTWPMGSTVEDQQVGCLW 288 (603)
T ss_pred CCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCce-EEEEEeeccceEEEeecCCchhceEEEEEE
Confidence 59999994 45667777776 89999999999999999999999999 99999987665544221
Q ss_pred ----------------------------CCCCcceEEEEecCCCCEEEEEcCCCcEEEEEccCCCCCC
Q 018248 220 ----------------------------GAERAEIYSLAFSSNAQWLAASSDKGTVHVFGLKVDSGSP 259 (359)
Q Consensus 220 ----------------------------~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~ 259 (359)
..|...|+++..+||+++|++|+.||.|.-|+..++...+
T Consensus 289 qkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~ 356 (603)
T KOG0318|consen 289 QKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDR 356 (603)
T ss_pred eCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCccccc
Confidence 1267899999999999999999999999999999887553
No 31
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=5.5e-35 Score=248.47 Aligned_cols=241 Identities=17% Similarity=0.237 Sum_probs=207.0
Q ss_pred CCceeEEEEeccCCEEEEEecCCCCCCeEEEEECCCc-------------------------------cEEeee-ccCcc
Q 018248 50 RGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDDHEN-------------------------------RYLGEL-SFRSE 97 (359)
Q Consensus 50 ~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~-------------------------------~~~~~~-~~~~~ 97 (359)
...+.+..++.+...++..- .|..|++|.+... ....++ .|.++
T Consensus 378 ~~~v~ca~fSddssmlA~Gf----~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GP 453 (707)
T KOG0263|consen 378 YQGVTCAEFSDDSSMLACGF----VDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSGP 453 (707)
T ss_pred CCcceeEeecCCcchhhccc----cccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCCc
Confidence 34567777877777555444 5789999986521 111222 38899
Q ss_pred eeEEEEecceeEEE---ecCeEEEEEcccceeeeeEeccCCCceeeeeecCCCccEEEecCCCCeeEEEEecCC-eeeEE
Q 018248 98 VKNVRLRRDRIVVV---LNQKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAGPMVMACPGLLKGQVRVEDYGT-KKSKY 173 (359)
Q Consensus 98 v~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~v~~~~~~~-~~~~~ 173 (359)
|....|+|+.++++ .|+++++|.+.+...+..+++|..+++.+.|+|.| .++|+ ++.|++.++|..+. .+++.
T Consensus 454 Vyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~G--yYFat-as~D~tArLWs~d~~~PlRi 530 (707)
T KOG0263|consen 454 VYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRG--YYFAT-ASHDQTARLWSTDHNKPLRI 530 (707)
T ss_pred eeeeeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCc--eEEEe-cCCCceeeeeecccCCchhh
Confidence 99999999999998 89999999999999999999999999999999876 45777 67899999998765 78888
Q ss_pred eecccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcEEEEeecCCCCcceEEEEecCCCCEEEEEcCCCcEEEEEcc
Q 018248 174 ITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSNAQWLAASSDKGTVHVFGLK 253 (359)
Q Consensus 174 ~~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~ 253 (359)
+.+|-+.|.|++|+|+..|+++||.|.+ |++||+.+|..++.|.+ |.++|.+++|||+|++|++|+.||.|++||+.
T Consensus 531 faghlsDV~cv~FHPNs~Y~aTGSsD~t-VRlWDv~~G~~VRiF~G--H~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~ 607 (707)
T KOG0263|consen 531 FAGHLSDVDCVSFHPNSNYVATGSSDRT-VRLWDVSTGNSVRIFTG--HKGPVTALAFSPCGRYLASGDEDGLIKIWDLA 607 (707)
T ss_pred hcccccccceEEECCcccccccCCCCce-EEEEEcCCCcEEEEecC--CCCceEEEEEcCCCceEeecccCCcEEEEEcC
Confidence 9999999999999999999999999999 99999999999999987 88999999999999999999999999999999
Q ss_pred CCCCCCCCCccccCCCCCccCCCCCceeeeeEeeeecceEEecccceeEEeecCCcEEEeeecccCCEEEEEecCCeEEE
Q 018248 254 VDSGSPGTSKLHSASEPNLSSKNSSAISSFRFIRGVLPKYFSSKWSMAQFRLPENVQYLVGFGRQNNTIVIVGLDGSYYK 333 (359)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v 333 (359)
++... ..++.|.+.|.++.|+.||..|++|+.|.+|++
T Consensus 608 ~~~~v------------------------------------------~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~l 645 (707)
T KOG0263|consen 608 NGSLV------------------------------------------KQLKGHTGTIYSLSFSRDGNVLASGGADNSVRL 645 (707)
T ss_pred CCcch------------------------------------------hhhhcccCceeEEEEecCCCEEEecCCCCeEEE
Confidence 98732 114456789999999999999999999999999
Q ss_pred EEeCCCCCC
Q 018248 334 CEFDPMKGG 342 (359)
Q Consensus 334 ~~~~~~~~~ 342 (359)
|++....+.
T Consensus 646 WD~~~~~~~ 654 (707)
T KOG0263|consen 646 WDLTKVIEL 654 (707)
T ss_pred EEchhhccc
Confidence 998765443
No 32
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.2e-34 Score=244.41 Aligned_cols=288 Identities=17% Similarity=0.229 Sum_probs=219.9
Q ss_pred CCCCceEEEEEccCCCEEEEec-CCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEE
Q 018248 4 PDPITIHHLALNQDHGCFATGT-ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWD 82 (359)
Q Consensus 4 ~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd 82 (359)
.|..||.-|+|+|.|..+++|+ |+.+++||+..+... ..|+ ||.+.|..+.|.++.+...+.++. .|+.+++||
T Consensus 103 ~He~Pvi~ma~~~~g~LlAtggaD~~v~VWdi~~~~~t--h~fk-G~gGvVssl~F~~~~~~~lL~sg~--~D~~v~vwn 177 (775)
T KOG0319|consen 103 IHEAPVITMAFDPTGTLLATGGADGRVKVWDIKNGYCT--HSFK-GHGGVVSSLLFHPHWNRWLLASGA--TDGTVRVWN 177 (775)
T ss_pred ccCCCeEEEEEcCCCceEEeccccceEEEEEeeCCEEE--EEec-CCCceEEEEEeCCccchhheeecC--CCceEEEEE
Confidence 5999999999999999999999 999999999975444 6676 999999999999998887777766 589999999
Q ss_pred CCCccE-Eeeec-cCcceeEEEEecceeEEE---ecCeEEEEEcccceeeee----------------------------
Q 018248 83 DHENRY-LGELS-FRSEVKNVRLRRDRIVVV---LNQKVYVYNFTDLKLVDQ---------------------------- 129 (359)
Q Consensus 83 ~~~~~~-~~~~~-~~~~v~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~---------------------------- 129 (359)
+.+... +..+. |.+.|+++.|.+++..++ .|..+.+||+.+.+....
T Consensus 178 l~~~~tcl~~~~~H~S~vtsL~~~~d~~~~ls~~RDkvi~vwd~~~~~~l~~lp~ye~~E~vv~l~~~~~~~~~~~~TaG 257 (775)
T KOG0319|consen 178 LNDKRTCLHTMILHKSAVTSLAFSEDSLELLSVGRDKVIIVWDLVQYKKLKTLPLYESLESVVRLREELGGKGEYIITAG 257 (775)
T ss_pred cccCchHHHHHHhhhhheeeeeeccCCceEEEeccCcEEEEeehhhhhhhheechhhheeeEEEechhcCCcceEEEEec
Confidence 986544 66666 888999999988876555 777777777633210000
Q ss_pred --------------------------------------------------------------------------------
Q 018248 130 -------------------------------------------------------------------------------- 129 (359)
Q Consensus 130 -------------------------------------------------------------------------------- 129 (359)
T Consensus 258 ~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~e~~ 337 (775)
T KOG0319|consen 258 GSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDEILDMKFLGPEES 337 (775)
T ss_pred CCceEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEEehhhcCCchhheeeeecCCccc
Confidence
Q ss_pred -----------------------EeccC----------------------------------------------CCceee
Q 018248 130 -----------------------IETVV----------------------------------------------NPTGLC 140 (359)
Q Consensus 130 -----------------------~~~~~----------------------------------------------~~~~~~ 140 (359)
+.+|. +.+..+
T Consensus 338 ~laVATNs~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgav 417 (775)
T KOG0319|consen 338 HLAVATNSPELRLYTLPTSYCQIIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAV 417 (775)
T ss_pred eEEEEeCCCceEEEecCCCceEEEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhccccccccee
Confidence 00111 111111
Q ss_pred eeecCCCccEEEecCCCCeeEEEEecCCe------eeE----EeecccccccEEEEccCCcEEEEEeCCCCeEEEEEcCC
Q 018248 141 DVSQNAGPMVMACPGLLKGQVRVEDYGTK------KSK----YITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMD 210 (359)
Q Consensus 141 ~~~~~~~~~~l~~~g~~d~~v~~~~~~~~------~~~----~~~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~ 210 (359)
+++..+. .++++ ++.|+++++|..... ... ....|...|++++++|+.+++||||.|.+ .+||++++
T Consensus 418 a~~~~~a-sffvs-vS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDkt-aKiW~le~ 494 (775)
T KOG0319|consen 418 AGSKLGA-SFFVS-VSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKT-AKIWDLEQ 494 (775)
T ss_pred eecccCc-cEEEE-ecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccc-eeeecccC
Confidence 1111111 11121 334566666655441 111 23468999999999999999999999999 99999999
Q ss_pred CcEEEEeecCCCCcceEEEEecCCCCEEEEEcCCCcEEEEEccCCCCCCCCCccccCCCCCccCCCCCceeeeeEeeeec
Q 018248 211 GSLLQEMRRGAERAEIYSLAFSSNAQWLAASSDKGTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSAISSFRFIRGVL 290 (359)
Q Consensus 211 ~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (359)
......+.+ |...|.++.|+|..+.|+|+|.|++|+||.+.+....
T Consensus 495 ~~l~~vLsG--H~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSCl-------------------------------- 540 (775)
T KOG0319|consen 495 LRLLGVLSG--HTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCL-------------------------------- 540 (775)
T ss_pred ceEEEEeeC--CccceEEEEeccccceeEeccCCceEEEEEeccceee--------------------------------
Confidence 999999998 8889999999999999999999999999999997632
Q ss_pred ceEEecccceeEEeecCCcEEEeeecccCCEEEEEecCCeEEEEEeCCCCCCceEE
Q 018248 291 PKYFSSKWSMAQFRLPENVQYLVGFGRQNNTIVIVGLDGSYYKCEFDPMKGGEMHQ 346 (359)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~ 346 (359)
.++..|...|..+.|-.+|.+|+++++||.+++|++.. ++|++
T Consensus 541 ----------kT~eGH~~aVlra~F~~~~~qliS~~adGliKlWnikt---~eC~~ 583 (775)
T KOG0319|consen 541 ----------KTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWNIKT---NECEM 583 (775)
T ss_pred ----------eeecCccceeEeeeeeeCCcEEEeccCCCcEEEEeccc---hhhhh
Confidence 12555677889999999999999999999999999986 56654
No 33
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=2.9e-35 Score=236.81 Aligned_cols=281 Identities=11% Similarity=0.142 Sum_probs=234.8
Q ss_pred CCCCCceEEEEEcc-CCCEEEEec-CCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEE
Q 018248 3 QPDPITIHHLALNQ-DHGCFATGT-ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMI 80 (359)
Q Consensus 3 ~~h~~~v~~~~~s~-~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~i 80 (359)
..|+..|+++.|.| .+.+|++++ |+.|+||++-. ...+.+++. ||..+|..++|+.++..++.++ .|+.|++
T Consensus 211 ~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~-~~~~lrtf~-gH~k~Vrd~~~s~~g~~fLS~s----fD~~lKl 284 (503)
T KOG0282|consen 211 SGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYD-DRRCLRTFK-GHRKPVRDASFNNCGTSFLSAS----FDRFLKL 284 (503)
T ss_pred cCCccccchhhhccceeeEEEecCCCceEEEEEEec-Ccceehhhh-cchhhhhhhhccccCCeeeeee----cceeeee
Confidence 35899999999999 888999999 99999999976 334446776 9999999999999999888888 8999999
Q ss_pred EECCCccEEeeeccCcceeEEEEecce-e-EEE--ecCeEEEEEcccceeeeeEeccCCCceeeeeecCCCccEEEecCC
Q 018248 81 WDDHENRYLGELSFRSEVKNVRLRRDR-I-VVV--LNQKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAGPMVMACPGL 156 (359)
Q Consensus 81 wd~~~~~~~~~~~~~~~v~~~~~~~~~-~-~~~--~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~ 156 (359)
||+++|+++..+.....+.++.|+|++ + +++ .|+.|+.||+++++.++.+..|-+.+..+.|-+.+.. +++ .+
T Consensus 285 wDtETG~~~~~f~~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~r--Fis-sS 361 (503)
T KOG0282|consen 285 WDTETGQVLSRFHLDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRR--FIS-SS 361 (503)
T ss_pred eccccceEEEEEecCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCce--Eee-ec
Confidence 999999999999999999999999988 3 333 8999999999999999999989999999999998887 443 44
Q ss_pred CCeeEEEEecCCeeeEEe--ecccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCC---cEEEEeecCCCCcceEEEEe
Q 018248 157 LKGQVRVEDYGTKKSKYI--TAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDG---SLLQEMRRGAERAEIYSLAF 231 (359)
Q Consensus 157 ~d~~v~~~~~~~~~~~~~--~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~---~~~~~~~~~~~~~~i~~~~~ 231 (359)
.|+.+++|..+......+ ..+.....++..+|++++++.-+.|.. |.+|.+... ...+.++++.-.+.-..+.|
T Consensus 362 Ddks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~-i~ifs~~~~~r~nkkK~feGh~vaGys~~v~f 440 (503)
T KOG0282|consen 362 DDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNY-IAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDF 440 (503)
T ss_pred cCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCce-EEEEecccccccCHhhhhcceeccCceeeEEE
Confidence 799999998876443332 233445678999999999999999999 999986542 23345666555677788999
Q ss_pred cCCCCEEEEEcCCCcEEEEEccCCCCCCCCCccccCCCCCccCCCCCceeeeeEeeeecceEEecccceeEEeecCCcEE
Q 018248 232 SSNAQWLAASSDKGTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSAISSFRFIRGVLPKYFSSKWSMAQFRLPENVQY 311 (359)
Q Consensus 232 s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 311 (359)
||||++|++|+.||.+.+||.++.+.. ..++.|.+.+.
T Consensus 441 SpDG~~l~SGdsdG~v~~wdwkt~kl~------------------------------------------~~lkah~~~ci 478 (503)
T KOG0282|consen 441 SPDGRTLCSGDSDGKVNFWDWKTTKLV------------------------------------------SKLKAHDQPCI 478 (503)
T ss_pred cCCCCeEEeecCCccEEEeechhhhhh------------------------------------------hccccCCcceE
Confidence 999999999999999999999986622 12455667889
Q ss_pred Eeeeccc-CCEEEEEecCCeEEEEE
Q 018248 312 LVGFGRQ-NNTIVIVGLDGSYYKCE 335 (359)
Q Consensus 312 ~~~~s~~-~~~l~~~~~dg~i~v~~ 335 (359)
.+.|+|. ...|++++.||.|++|+
T Consensus 479 ~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 479 GVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred EEEecCCCcceeEecccCceeEecC
Confidence 9999995 47789999999999994
No 34
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.1e-33 Score=234.67 Aligned_cols=277 Identities=10% Similarity=0.147 Sum_probs=234.6
Q ss_pred CCCCCceEEEEEccCCCEEEEec-CCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEE
Q 018248 3 QPDPITIHHLALNQDHGCFATGT-ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIW 81 (359)
Q Consensus 3 ~~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iw 81 (359)
+.+.+.|-++.|+|....++++- +|.+.|||.++.......... .-+|....+....+.++..+ .|..|++|
T Consensus 10 ~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~---~~PvRa~kfiaRknWiv~Gs----DD~~IrVf 82 (794)
T KOG0276|consen 10 QSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVS---EVPVRAAKFIARKNWIVTGS----DDMQIRVF 82 (794)
T ss_pred hccCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeeec---ccchhhheeeeccceEEEec----CCceEEEE
Confidence 35789999999999999999998 999999999986666444443 67888888888888888777 79999999
Q ss_pred ECCCccEEeeec-cCcceeEEEEecceeEEE---ecCeEEEEEccc-ceeeeeEeccCCCceeeeeecCCCccEEEecCC
Q 018248 82 DDHENRYLGELS-FRSEVKNVRLRRDRIVVV---LNQKVYVYNFTD-LKLVDQIETVVNPTGLCDVSQNAGPMVMACPGL 156 (359)
Q Consensus 82 d~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~---~d~~i~i~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~ 156 (359)
+..+++.+..+. |++-|++++.+|...+++ .|-.|++||-+. -.+.+++++|.+-+..++|.|..... +|+ ++
T Consensus 83 nynt~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~nt-FaS-~s 160 (794)
T KOG0276|consen 83 NYNTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNT-FAS-AS 160 (794)
T ss_pred ecccceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccc-eee-ee
Confidence 999999999999 999999999999998888 788999999854 46788899999999999999977653 454 77
Q ss_pred CCeeEEEEecCC-eeeEEeecccccccEEEEccCC--cEEEEEeCCCCeEEEEEcCCCcEEEEeecCCCCcceEEEEecC
Q 018248 157 LKGQVRVEDYGT-KKSKYITAHASRIASIAMTLDG--RFVATASSKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSS 233 (359)
Q Consensus 157 ~d~~v~~~~~~~-~~~~~~~~~~~~i~~~~~s~~~--~~l~~~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~ 233 (359)
-|++|++|.... .+..++.+|...|+|+.+-+-| .+|++|++|.. |+|||.++..+++++.+ |...|..+.|+|
T Consensus 161 LDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~t-iKvWDyQtk~CV~TLeG--Ht~Nvs~v~fhp 237 (794)
T KOG0276|consen 161 LDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLT-IKVWDYQTKSCVQTLEG--HTNNVSFVFFHP 237 (794)
T ss_pred ccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCce-EEEeecchHHHHHHhhc--ccccceEEEecC
Confidence 899999999875 6678899999999999998754 59999999999 99999999999999998 677899999999
Q ss_pred CCCEEEEEcCCCcEEEEEccCCCCCCCCCccccCCCCCccCCCCCceeeeeEeeeecceEEecccceeEEeecCCcEEEe
Q 018248 234 NAQWLAASSDKGTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSAISSFRFIRGVLPKYFSSKWSMAQFRLPENVQYLV 313 (359)
Q Consensus 234 ~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 313 (359)
.-.++++|++||+++||+-.+-+... .+....+.++++
T Consensus 238 ~lpiiisgsEDGTvriWhs~Ty~lE~------------------------------------------tLn~gleRvW~I 275 (794)
T KOG0276|consen 238 ELPIIISGSEDGTVRIWNSKTYKLEK------------------------------------------TLNYGLERVWCI 275 (794)
T ss_pred CCcEEEEecCCccEEEecCcceehhh------------------------------------------hhhcCCceEEEE
Confidence 99999999999999999998865321 012223456777
Q ss_pred eecccCCEEEEEecCCeEEE
Q 018248 314 GFGRQNNTIVIVGLDGSYYK 333 (359)
Q Consensus 314 ~~s~~~~~l~~~~~dg~i~v 333 (359)
+-.+.++.+++|.++|.+.+
T Consensus 276 ~~~k~~~~i~vG~Deg~i~v 295 (794)
T KOG0276|consen 276 AAHKGDGKIAVGFDEGSVTV 295 (794)
T ss_pred eecCCCCeEEEeccCCcEEE
Confidence 77777777777777776654
No 35
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=8.7e-33 Score=215.17 Aligned_cols=278 Identities=12% Similarity=0.143 Sum_probs=230.4
Q ss_pred CCCCCceEEEEEccCCCEEEEec-CCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEE
Q 018248 3 QPDPITIHHLALNQDHGCFATGT-ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIW 81 (359)
Q Consensus 3 ~~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iw 81 (359)
+.|+.+|.+++.+|+.+++++|+ |..-.+|+..+++.... +. +|...|.++.|++++.+++... -+|.|+||
T Consensus 61 ~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~e--lt-gHKDSVt~~~FshdgtlLATGd----msG~v~v~ 133 (399)
T KOG0296|consen 61 DKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGE--LT-GHKDSVTCCSFSHDGTLLATGD----MSGKVLVF 133 (399)
T ss_pred hhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcceeE--ec-CCCCceEEEEEccCceEEEecC----CCccEEEE
Confidence 46999999999999999999999 99999999999885543 43 9999999999999988887766 68999999
Q ss_pred ECCCccEEeeec-cCcceeEEEEecceeEEE---ecCeEEEEEcccceeeeeEeccCCCceeeeeecCCCccEEEecCCC
Q 018248 82 DDHENRYLGELS-FRSEVKNVRLRRDRIVVV---LNQKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAGPMVMACPGLL 157 (359)
Q Consensus 82 d~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~ 157 (359)
+..++.....+. .-..+.-+.|+|.+.+++ .||.+.+|.+.++...+.+.+|..++++-.|.|+++. +++ +..
T Consensus 134 ~~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr--~~t-gy~ 210 (399)
T KOG0296|consen 134 KVSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKR--ILT-GYD 210 (399)
T ss_pred EcccCceEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCce--EEE-Eec
Confidence 999998888886 557788899999988777 8999999999888888999999999999999999987 444 667
Q ss_pred CeeEEEEecCC-eeeEEee---------------------------------------------------cccccccEEE
Q 018248 158 KGQVRVEDYGT-KKSKYIT---------------------------------------------------AHASRIASIA 185 (359)
Q Consensus 158 d~~v~~~~~~~-~~~~~~~---------------------------------------------------~~~~~i~~~~ 185 (359)
||+|++|+... +++..+. .+...+.++.
T Consensus 211 dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve 290 (399)
T KOG0296|consen 211 DGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVE 290 (399)
T ss_pred CceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhh
Confidence 99999998653 2222221 1122233333
Q ss_pred ---EccCCcEEEEEeCCCCeEEEEEcCCCcEEEEeecCCCCcceEEEEecCCCCEEEEEcCCCcEEEEEccCCCCCCCCC
Q 018248 186 ---MTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSNAQWLAASSDKGTVHVFGLKVDSGSPGTS 262 (359)
Q Consensus 186 ---~s~~~~~l~~~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~ 262 (359)
++..-.+.|+|+-||+ |.|||+...+....+. |+.+|..+.|-+ ..+|++++.+|.|+.||.++++..
T Consensus 291 ~~~~ss~lpL~A~G~vdG~-i~iyD~a~~~~R~~c~---he~~V~~l~w~~-t~~l~t~c~~g~v~~wDaRtG~l~---- 361 (399)
T KOG0296|consen 291 SIPSSSKLPLAACGSVDGT-IAIYDLAASTLRHICE---HEDGVTKLKWLN-TDYLLTACANGKVRQWDARTGQLK---- 361 (399)
T ss_pred hcccccccchhhcccccce-EEEEecccchhheecc---CCCceEEEEEcC-cchheeeccCceEEeeeccccceE----
Confidence 3334457889999999 9999998888877776 778899999998 789999999999999999998721
Q ss_pred ccccCCCCCccCCCCCceeeeeEeeeecceEEecccceeEEeecCCcEEEeeecccCCEEEEEecCCeEEEEEeC
Q 018248 263 KLHSASEPNLSSKNSSAISSFRFIRGVLPKYFSSKWSMAQFRLPENVQYLVGFGRQNNTIVIVGLDGSYYKCEFD 337 (359)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~ 337 (359)
..+..|...|...+++|+.+++++++.|++.+||.++
T Consensus 362 --------------------------------------~~y~GH~~~Il~f~ls~~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 362 --------------------------------------FTYTGHQMGILDFALSPQKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred --------------------------------------EEEecCchheeEEEEcCCCcEEEEecCCCeEEEEecC
Confidence 1255677889999999999999999999999999764
No 36
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=4.8e-33 Score=204.43 Aligned_cols=274 Identities=14% Similarity=0.205 Sum_probs=222.3
Q ss_pred CCCCceEEEEEccCCCEEEEec-CCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEE
Q 018248 4 PDPITIHHLALNQDHGCFATGT-ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWD 82 (359)
Q Consensus 4 ~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd 82 (359)
.+.++|.++.|+-||++.++++ |.+|++|+...+..+ ++.. ||..+|..++.+++...++.++ .|..+.+||
T Consensus 15 ~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~li--ktYs-ghG~EVlD~~~s~Dnskf~s~G----gDk~v~vwD 87 (307)
T KOG0316|consen 15 CAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALI--KTYS-GHGHEVLDAALSSDNSKFASCG----GDKAVQVWD 87 (307)
T ss_pred ccccceEEEEEccCCCEEEEcCCCceEEeeccccccee--eeec-CCCceeeeccccccccccccCC----CCceEEEEE
Confidence 4788999999999999998888 999999998876555 5565 9999999999998888777666 589999999
Q ss_pred CCCccEEeeec-cCcceeEEEEecceeEEE---ecCeEEEEEccc--ceeeeeEeccCCCceeeeeecCCCccEEEecCC
Q 018248 83 DHENRYLGELS-FRSEVKNVRLRRDRIVVV---LNQKVYVYNFTD--LKLVDQIETVVNPTGLCDVSQNAGPMVMACPGL 156 (359)
Q Consensus 83 ~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~---~d~~i~i~d~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~ 156 (359)
+.+|+.++.+. |..+|+.++|+.+...++ .|.++++||.++ .++++.+......+..+.++... ++. |+
T Consensus 88 V~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~~he----Iva-GS 162 (307)
T KOG0316|consen 88 VNTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVAEHE----IVA-GS 162 (307)
T ss_pred cccCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEecccE----EEe-ec
Confidence 99999999999 999999999999998888 899999999954 56788887777777766665432 444 88
Q ss_pred CCeeEEEEecCCeeeEEeecccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcEEEEeecCCCCcceEEEEecCCCC
Q 018248 157 LKGQVRVEDYGTKKSKYITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSNAQ 236 (359)
Q Consensus 157 ~d~~v~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~ 236 (359)
.||+++.++.+...+.. .--..+|++++|++|++..+.++.|++ +++.|-.+|+.+..++++.....-...+++....
T Consensus 163 ~DGtvRtydiR~G~l~s-Dy~g~pit~vs~s~d~nc~La~~l~st-lrLlDk~tGklL~sYkGhkn~eykldc~l~qsdt 240 (307)
T KOG0316|consen 163 VDGTVRTYDIRKGTLSS-DYFGHPITSVSFSKDGNCSLASSLDST-LRLLDKETGKLLKSYKGHKNMEYKLDCCLNQSDT 240 (307)
T ss_pred cCCcEEEEEeecceeeh-hhcCCcceeEEecCCCCEEEEeeccce-eeecccchhHHHHHhcccccceeeeeeeecccce
Confidence 99999997766543322 223468999999999999999999999 9999999999999999865555556677877788
Q ss_pred EEEEEcCCCcEEEEEccCCCCCCCCCccccCCCCCccCCCCCceeeeeEeeeecceEEecccceeEEeecCCc-EEEeee
Q 018248 237 WLAASSDKGTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSAISSFRFIRGVLPKYFSSKWSMAQFRLPENV-QYLVGF 315 (359)
Q Consensus 237 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-v~~~~~ 315 (359)
.+++|++||.|++||+....... .++.+... +..+++
T Consensus 241 hV~sgSEDG~Vy~wdLvd~~~~s------------------------------------------k~~~~~~v~v~dl~~ 278 (307)
T KOG0316|consen 241 HVFSGSEDGKVYFWDLVDETQIS------------------------------------------KLSVVSTVIVTDLSC 278 (307)
T ss_pred eEEeccCCceEEEEEeccceeee------------------------------------------eeccCCceeEEeeec
Confidence 99999999999999998876220 13333434 788999
Q ss_pred cccCCEEEEEecCCeEEE
Q 018248 316 GRQNNTIVIVGLDGSYYK 333 (359)
Q Consensus 316 s~~~~~l~~~~~dg~i~v 333 (359)
+|.-..++++...+.+..
T Consensus 279 hp~~~~f~~A~~~~~~~~ 296 (307)
T KOG0316|consen 279 HPTMDDFITATGHGDLFW 296 (307)
T ss_pred ccCccceeEecCCceece
Confidence 998777777776664443
No 37
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.9e-33 Score=217.73 Aligned_cols=240 Identities=14% Similarity=0.237 Sum_probs=214.6
Q ss_pred CCCCCceEEEEEccCCCEEEEec-CCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEE
Q 018248 3 QPDPITIHHLALNQDHGCFATGT-ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIW 81 (359)
Q Consensus 3 ~~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iw 81 (359)
+.|.+.|..++|+..|+++|+++ |-.+++||.+...... +.+. ||...|.++.+.|.+++++.++ .|.+|+.|
T Consensus 147 rGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~~~c~-ks~~-gh~h~vS~V~f~P~gd~ilS~s----rD~tik~W 220 (406)
T KOG0295|consen 147 RGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTFFRCI-KSLI-GHEHGVSSVFFLPLGDHILSCS----RDNTIKAW 220 (406)
T ss_pred hccccceeEEEEecCccEEEecCCccchhheeHHHHHHHH-HHhc-CcccceeeEEEEecCCeeeecc----cccceeEE
Confidence 36888999999999999999999 8779999998643332 2333 8999999999999998888777 89999999
Q ss_pred ECCCccEEeeec-cCcceeEEEEecceeEEE---ecCeEEEEEcccceeeeeEeccCCCceeeeeecCCC----------
Q 018248 82 DDHENRYLGELS-FRSEVKNVRLRRDRIVVV---LNQKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAG---------- 147 (359)
Q Consensus 82 d~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~---------- 147 (359)
++.++.++.++. |...|..++.+.||.+++ .|.++++|-+.++++...+..|..++.+++|.|...
T Consensus 221 e~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~ 300 (406)
T KOG0295|consen 221 ECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGS 300 (406)
T ss_pred ecccceeEEeccCchHhEEEEEecCCeeEEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCC
Confidence 999999999999 999999999999999999 889999999999988889999999999999987421
Q ss_pred ---ccEEEecCCCCeeEEEEecC-CeeeEEeecccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcEEEEeecCCCC
Q 018248 148 ---PMVMACPGLLKGQVRVEDYG-TKKSKYITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRRGAER 223 (359)
Q Consensus 148 ---~~~l~~~g~~d~~v~~~~~~-~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~~~~~~~~~~~ 223 (359)
..++++ ++.|++|++|+.. +.++.++.+|...|..++|+|.|+||+++.+|++ +++||++++++...+.. |+
T Consensus 301 ~~~~~~l~s-~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDkt-lrvwdl~~~~cmk~~~a--h~ 376 (406)
T KOG0295|consen 301 TNGGQVLGS-GSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSPGGKYILSCADDKT-LRVWDLKNLQCMKTLEA--HE 376 (406)
T ss_pred CCCccEEEe-ecccceEEEEeccCCeEEEEEecccceeeeeEEcCCCeEEEEEecCCc-EEEEEeccceeeeccCC--Cc
Confidence 134555 8899999998876 4788999999999999999999999999999999 99999999999999986 77
Q ss_pred cceEEEEecCCCCEEEEEcCCCcEEEEEc
Q 018248 224 AEIYSLAFSSNAQWLAASSDKGTVHVFGL 252 (359)
Q Consensus 224 ~~i~~~~~s~~~~~l~~~~~dg~i~iw~~ 252 (359)
..++++.|+.+..++++|+-|.++++|..
T Consensus 377 hfvt~lDfh~~~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 377 HFVTSLDFHKTAPYVVTGSVDQTVKVWEC 405 (406)
T ss_pred ceeEEEecCCCCceEEeccccceeeeeec
Confidence 79999999999999999999999999964
No 38
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=1.1e-34 Score=228.69 Aligned_cols=243 Identities=14% Similarity=0.138 Sum_probs=211.9
Q ss_pred CCCCCCceEEEEEccCCCEEEEec-CCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEE
Q 018248 2 NQPDPITIHHLALNQDHGCFATGT-ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMI 80 (359)
Q Consensus 2 ~~~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~i 80 (359)
.|.|+.+|.+|.|+++|.++++|+ +|.|++|+.+-... +.+...|...|..++++++...++.++ .|++|+|
T Consensus 134 lQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnnV---k~~~ahh~eaIRdlafSpnDskF~t~S----dDg~iki 206 (464)
T KOG0284|consen 134 LQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNNV---KIIQAHHAEAIRDLAFSPNDSKFLTCS----DDGTIKI 206 (464)
T ss_pred hhhhcccceeEEEccCCCEEEEcCCCceEEecccchhhh---HHhhHhhhhhhheeccCCCCceeEEec----CCCeEEE
Confidence 478999999999999999999999 99999999874322 223324568999999999888888877 7999999
Q ss_pred EECCCccEEeeec-cCcceeEEEEecceeEEE---ecCeEEEEEcccceeeeeEeccCCCceeeeeecCCCccEEEecCC
Q 018248 81 WDDHENRYLGELS-FRSEVKNVRLRRDRIVVV---LNQKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAGPMVMACPGL 156 (359)
Q Consensus 81 wd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~ 156 (359)
||....+....+. |.-.|.++.|+|...+++ .|+.|++||.++++++.++..|.+.|..+.|+++++ +|++ ++
T Consensus 207 Wdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N--~Llt-~s 283 (464)
T KOG0284|consen 207 WDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGN--WLLT-GS 283 (464)
T ss_pred EeccCCchhheeccCCCCcceeccCCccceeEEccCCceeEeecCCCcchhhhhhhccceEEEEEEcCCCC--eeEE-cc
Confidence 9998888878887 999999999999987777 788999999999999999999999999999999884 4776 77
Q ss_pred CCeeEEEEecC-CeeeEEeecccccccEEEEccC-CcEEEEEeCCCCeEEEEEcCCCcEEEEeecCCCCcceEEEEecCC
Q 018248 157 LKGQVRVEDYG-TKKSKYITAHASRIASIAMTLD-GRFVATASSKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSN 234 (359)
Q Consensus 157 ~d~~v~~~~~~-~~~~~~~~~~~~~i~~~~~s~~-~~~l~~~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~ 234 (359)
.|..+++++.+ .+.++.+++|+..++++.|+|- ..+|.+|+.||. |..|.+...+++..+.. .|...|++++|+|-
T Consensus 284 kD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgs-vvh~~v~~~~p~~~i~~-AHd~~iwsl~~hPl 361 (464)
T KOG0284|consen 284 KDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGS-VVHWVVGLEEPLGEIPP-AHDGEIWSLAYHPL 361 (464)
T ss_pred CCceEEEEehhHhHHHHHhhcchhhheeeccccccccceeeccCCCc-eEEEeccccccccCCCc-ccccceeeeecccc
Confidence 99999997666 6888899999999999999994 558889999999 99999987777777763 48899999999999
Q ss_pred CCEEEEEcCCCcEEEEEccCCC
Q 018248 235 AQWLAASSDKGTVHVFGLKVDS 256 (359)
Q Consensus 235 ~~~l~~~~~dg~i~iw~~~~~~ 256 (359)
|.+|++|+.|.++++|.-....
T Consensus 362 Ghil~tgsnd~t~rfw~r~rp~ 383 (464)
T KOG0284|consen 362 GHILATGSNDRTVRFWTRNRPG 383 (464)
T ss_pred ceeEeecCCCcceeeeccCCCC
Confidence 9999999999999999876543
No 39
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=6.4e-34 Score=220.49 Aligned_cols=277 Identities=14% Similarity=0.246 Sum_probs=216.7
Q ss_pred CCCCceEEEEEccCCCEEEEec-CCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEE
Q 018248 4 PDPITIHHLALNQDHGCFATGT-ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWD 82 (359)
Q Consensus 4 ~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd 82 (359)
.....|+|+.+. ...+++|. |++|+|||.++.... ..+. ||++.|.++.+ +.. ++++|+ .|.+|++||
T Consensus 195 e~skgVYClQYD--D~kiVSGlrDnTikiWD~n~~~c~--~~L~-GHtGSVLCLqy--d~r--viisGS--SDsTvrvWD 263 (499)
T KOG0281|consen 195 ENSKGVYCLQYD--DEKIVSGLRDNTIKIWDKNSLECL--KILT-GHTGSVLCLQY--DER--VIVSGS--SDSTVRVWD 263 (499)
T ss_pred ccCCceEEEEec--chhhhcccccCceEEeccccHHHH--Hhhh-cCCCcEEeeec--cce--EEEecC--CCceEEEEe
Confidence 346789999975 55789999 999999999875444 4444 99999887765 344 344444 689999999
Q ss_pred CCCccEEeeec-cCcceeEEEEecceeEEE-ecCeEEEEEcccce---eeeeEeccCCCceeeeeecCCCccEEEecCCC
Q 018248 83 DHENRYLGELS-FRSEVKNVRLRRDRIVVV-LNQKVYVYNFTDLK---LVDQIETVVNPTGLCDVSQNAGPMVMACPGLL 157 (359)
Q Consensus 83 ~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~-~d~~i~i~d~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~ 157 (359)
+++++++.++- |-..|..+.|+..-..-+ .|.+|.+||+.... +.+.+.+|...++.+.|+. + ++++ ++.
T Consensus 264 v~tge~l~tlihHceaVLhlrf~ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd~--k--yIVs-ASg 338 (499)
T KOG0281|consen 264 VNTGEPLNTLIHHCEAVLHLRFSNGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDD--K--YIVS-ASG 338 (499)
T ss_pred ccCCchhhHHhhhcceeEEEEEeCCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeecccc--c--eEEE-ecC
Confidence 99999999987 889999999986544444 99999999996543 3445678888888777643 3 4555 567
Q ss_pred CeeEEEEecCC-eeeEEeecccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcEEEEeecCCCCcceEEEEecCCCC
Q 018248 158 KGQVRVEDYGT-KKSKYITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSNAQ 236 (359)
Q Consensus 158 d~~v~~~~~~~-~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~ 236 (359)
|.+|++|+.+. ..++++.+|+..|.|+.+ .++++++|+.|.+ |++||+..|.+++.+++ |+.-|.++.| |.+
T Consensus 339 DRTikvW~~st~efvRtl~gHkRGIAClQY--r~rlvVSGSSDnt-IRlwdi~~G~cLRvLeG--HEeLvRciRF--d~k 411 (499)
T KOG0281|consen 339 DRTIKVWSTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNT-IRLWDIECGACLRVLEG--HEELVRCIRF--DNK 411 (499)
T ss_pred CceEEEEeccceeeehhhhcccccceehhc--cCeEEEecCCCce-EEEEeccccHHHHHHhc--hHHhhhheee--cCc
Confidence 99999998875 778899999999999987 6899999999999 99999999999999998 7789999999 678
Q ss_pred EEEEEcCCCcEEEEEccCCCCCCCCCccccCCCCCccCCCCCceeeeeEeeeecceEEecccceeEEeecCCcEEEeeec
Q 018248 237 WLAASSDKGTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSAISSFRFIRGVLPKYFSSKWSMAQFRLPENVQYLVGFG 316 (359)
Q Consensus 237 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 316 (359)
.+++|+.||+|+|||+..+.... ...+.+. ...+.-+.|.|..+.|.
T Consensus 412 rIVSGaYDGkikvWdl~aaldpr------------------a~~~~~C---------------l~~lv~hsgRVFrLQFD 458 (499)
T KOG0281|consen 412 RIVSGAYDGKIKVWDLQAALDPR------------------APASTLC---------------LRTLVEHSGRVFRLQFD 458 (499)
T ss_pred eeeeccccceEEEEecccccCCc------------------ccccchH---------------HHhhhhccceeEEEeec
Confidence 99999999999999999876321 0011110 00112234677888884
Q ss_pred ccCCEEEEEecCCeEEEEEeCC
Q 018248 317 RQNNTIVIVGLDGSYYKCEFDP 338 (359)
Q Consensus 317 ~~~~~l~~~~~dg~i~v~~~~~ 338 (359)
...|++.+.|.+|.||++..
T Consensus 459 --~fqIvsssHddtILiWdFl~ 478 (499)
T KOG0281|consen 459 --EFQIISSSHDDTILIWDFLN 478 (499)
T ss_pred --ceEEEeccCCCeEEEEEcCC
Confidence 46899999999999999875
No 40
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=100.00 E-value=4.5e-33 Score=206.34 Aligned_cols=282 Identities=13% Similarity=0.139 Sum_probs=232.7
Q ss_pred CCCCCceEEEEEcc---CCCEEEEec-CCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeE
Q 018248 3 QPDPITIHHLALNQ---DHGCFATGT-ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKV 78 (359)
Q Consensus 3 ~~h~~~v~~~~~s~---~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i 78 (359)
..|..+|..++||| +|-+|++++ |+.-.+-+-+++.-+ -+|. ||.+.|....+..+....+.++ .|-+-
T Consensus 11 ~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwi--gtfe-ghkgavw~~~l~~na~~aasaa----adfta 83 (334)
T KOG0278|consen 11 HGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWI--GTFE-GHKGAVWSATLNKNATRAASAA----ADFTA 83 (334)
T ss_pred cCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcE--Eeee-ccCcceeeeecCchhhhhhhhc----ccchh
Confidence 35899999999995 898999999 999888888887766 5666 9999999887755444444444 68999
Q ss_pred EEEECCCccEEeeeccCcceeEEEEecceeEEE---ecCeEEEEEcccc-eeeeeEeccCCCceeeeeecCCCccEEEec
Q 018248 79 MIWDDHENRYLGELSFRSEVKNVRLRRDRIVVV---LNQKVYVYNFTDL-KLVDQIETVVNPTGLCDVSQNAGPMVMACP 154 (359)
Q Consensus 79 ~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~---~d~~i~i~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 154 (359)
++||.-+|..+..+.|..-|..++|+.|..+++ .+.-++|||++.. .+...+.+|.+.+..+.|....+. +.+
T Consensus 84 kvw~a~tgdelhsf~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~--iLS- 160 (334)
T KOG0278|consen 84 KVWDAVTGDELHSFEHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKC--ILS- 160 (334)
T ss_pred hhhhhhhhhhhhhhhhhheeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCce--EEe-
Confidence 999999999999999999999999999998888 6778999999654 456678889999998888876654 444
Q ss_pred CCCCeeEEEEecCCe-eeEEeecccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcEEEEeecCCCCcceEEEEecC
Q 018248 155 GLLKGQVRVEDYGTK-KSKYITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSS 233 (359)
Q Consensus 155 g~~d~~v~~~~~~~~-~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~ 233 (359)
...|++|++|+.+.. .++.+. -..+|+++.++++|++|.++. .+. |.+||..+...++.++. +..|.+..++|
T Consensus 161 Sadd~tVRLWD~rTgt~v~sL~-~~s~VtSlEvs~dG~ilTia~-gss-V~Fwdaksf~~lKs~k~---P~nV~SASL~P 234 (334)
T KOG0278|consen 161 SADDKTVRLWDHRTGTEVQSLE-FNSPVTSLEVSQDGRILTIAY-GSS-VKFWDAKSFGLLKSYKM---PCNVESASLHP 234 (334)
T ss_pred eccCCceEEEEeccCcEEEEEe-cCCCCcceeeccCCCEEEEec-Cce-eEEeccccccceeeccC---ccccccccccC
Confidence 358999999887664 444444 567899999999999886654 445 99999999999998884 57899999999
Q ss_pred CCCEEEEEcCCCcEEEEEccCCCCCCCCCccccCCCCCccCCCCCceeeeeEeeeecceEEecccceeEEeecCCcEEEe
Q 018248 234 NAQWLAASSDKGTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSAISSFRFIRGVLPKYFSSKWSMAQFRLPENVQYLV 313 (359)
Q Consensus 234 ~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 313 (359)
+...+++|++|..++.||..+++... .+ -+.+.++|.++
T Consensus 235 ~k~~fVaGged~~~~kfDy~TgeEi~---------------------------------~~--------nkgh~gpVhcV 273 (334)
T KOG0278|consen 235 KKEFFVAGGEDFKVYKFDYNTGEEIG---------------------------------SY--------NKGHFGPVHCV 273 (334)
T ss_pred CCceEEecCcceEEEEEeccCCceee---------------------------------ec--------ccCCCCceEEE
Confidence 99999999999999999999987431 00 13456899999
Q ss_pred eecccCCEEEEEecCCeEEEEEeCCCCC
Q 018248 314 GFGRQNNTIVIVGLDGSYYKCEFDPMKG 341 (359)
Q Consensus 314 ~~s~~~~~l~~~~~dg~i~v~~~~~~~~ 341 (359)
.|+|||..-++|++||+|++|...+.+.
T Consensus 274 rFSPdGE~yAsGSEDGTirlWQt~~~~~ 301 (334)
T KOG0278|consen 274 RFSPDGELYASGSEDGTIRLWQTTPGKT 301 (334)
T ss_pred EECCCCceeeccCCCceEEEEEecCCCc
Confidence 9999999999999999999999988543
No 41
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=8e-32 Score=209.82 Aligned_cols=239 Identities=15% Similarity=0.199 Sum_probs=199.5
Q ss_pred CCCCceEEEEEccCCCEEEEec-CCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEE
Q 018248 4 PDPITIHHLALNQDHGCFATGT-ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWD 82 (359)
Q Consensus 4 ~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd 82 (359)
.|++.|+++.||.||.+||+|. +|.|+||+..++....... .....+..+.|+|....++..+ .||.+.+|.
T Consensus 104 gHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~---~e~~dieWl~WHp~a~illAG~----~DGsvWmw~ 176 (399)
T KOG0296|consen 104 GHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLD---QEVEDIEWLKWHPRAHILLAGS----TDGSVWMWQ 176 (399)
T ss_pred CCCCceEEEEEccCceEEEecCCCccEEEEEcccCceEEEee---cccCceEEEEecccccEEEeec----CCCcEEEEE
Confidence 5999999999999999999999 9999999999877665443 2367788888888666555555 789999999
Q ss_pred CCCccEEeeec-cCcceeEEEEecceeEEE---ecCeEEEEEcccceeeeeEeccCC-----------------------
Q 018248 83 DHENRYLGELS-FRSEVKNVRLRRDRIVVV---LNQKVYVYNFTDLKLVDQIETVVN----------------------- 135 (359)
Q Consensus 83 ~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~~~~~----------------------- 135 (359)
+.++...+.+. |..++++=.|.|+|+.++ .||+|++||+.+++++..+....+
T Consensus 177 ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~ 256 (399)
T KOG0296|consen 177 IPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGV 256 (399)
T ss_pred CCCcceeeEecCCCCCcccccccCCCceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCcc
Confidence 99977777777 999999999999999888 899999999999988877752110
Q ss_pred ----------------------------CceeeeeecCCCccEEEecCCCCeeEEEEecCCeeeEEeecccccccEEEEc
Q 018248 136 ----------------------------PTGLCDVSQNAGPMVMACPGLLKGQVRVEDYGTKKSKYITAHASRIASIAMT 187 (359)
Q Consensus 136 ----------------------------~~~~~~~~~~~~~~~l~~~g~~d~~v~~~~~~~~~~~~~~~~~~~i~~~~~s 187 (359)
.+.++.+.|....+-|++.|+-||+|.||+.....++..-.|..+|..+.|-
T Consensus 257 ~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~he~~V~~l~w~ 336 (399)
T KOG0296|consen 257 ACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICEHEDGVTKLKWL 336 (399)
T ss_pred EEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhheeccCCCceEEEEEc
Confidence 0011122222222334444888999999999998899998999999999999
Q ss_pred cCCcEEEEEeCCCCeEEEEEcCCCcEEEEeecCCCCcceEEEEecCCCCEEEEEcCCCcEEEEEcc
Q 018248 188 LDGRFVATASSKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSNAQWLAASSDKGTVHVFGLK 253 (359)
Q Consensus 188 ~~~~~l~~~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~ 253 (359)
+ ..+|++++.+|. |+.||.++|+++.++.+ |...|.+++++|+.+++++++.|++.+||++.
T Consensus 337 ~-t~~l~t~c~~g~-v~~wDaRtG~l~~~y~G--H~~~Il~f~ls~~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 337 N-TDYLLTACANGK-VRQWDARTGQLKFTYTG--HQMGILDFALSPQKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred C-cchheeeccCce-EEeeeccccceEEEEec--CchheeEEEEcCCCcEEEEecCCCeEEEEecC
Confidence 8 789999999999 99999999999999998 78899999999999999999999999999875
No 42
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=5.3e-32 Score=228.56 Aligned_cols=278 Identities=12% Similarity=0.161 Sum_probs=226.4
Q ss_pred CCceEEEEEc-cCCCEEEEec-CCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEEC
Q 018248 6 PITIHHLALN-QDHGCFATGT-ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDD 83 (359)
Q Consensus 6 ~~~v~~~~~s-~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~ 83 (359)
.+.|..|+|- |+.++||+++ .+.+++|++.+.... .+. ||...|..+...-++..++.++ .|+++++|.+
T Consensus 323 ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~---ii~-GH~e~vlSL~~~~~g~llat~s----KD~svilWr~ 394 (775)
T KOG0319|consen 323 NDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQ---IIP-GHTEAVLSLDVWSSGDLLATGS----KDKSVILWRL 394 (775)
T ss_pred chhheeeeecCCccceEEEEeCCCceEEEecCCCceE---EEe-CchhheeeeeecccCcEEEEec----CCceEEEEEe
Confidence 4678888874 7889999999 899999988765443 233 8999998888544454555555 7999999987
Q ss_pred CCcc----EEeeec-cCcceeEEEEeccee-EEE---ecCeEEEEEccccee-----ee----eEeccCCCceeeeeecC
Q 018248 84 HENR----YLGELS-FRSEVKNVRLRRDRI-VVV---LNQKVYVYNFTDLKL-----VD----QIETVVNPTGLCDVSQN 145 (359)
Q Consensus 84 ~~~~----~~~~~~-~~~~v~~~~~~~~~~-~~~---~d~~i~i~d~~~~~~-----~~----~~~~~~~~~~~~~~~~~ 145 (359)
+++. ++.... |...|.+++++..+. +++ .|.++++|++...+. .. +...|...+++++++|+
T Consensus 395 ~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~n 474 (775)
T KOG0319|consen 395 NNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPN 474 (775)
T ss_pred cCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCC
Confidence 5442 233334 899999999977653 333 899999999965211 11 22458889999999998
Q ss_pred CCccEEEecCCCCeeEEEEecCC-eeeEEeecccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcEEEEeecCCCCc
Q 018248 146 AGPMVMACPGLLKGQVRVEDYGT-KKSKYITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRRGAERA 224 (359)
Q Consensus 146 ~~~~~l~~~g~~d~~v~~~~~~~-~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~~~~~~~~~~~~ 224 (359)
.+- +|+ |+.|.+.++|+... .....+.+|+..|.++.|+|..+.+||+|.|++ |+||.+.++.++++|.+ |..
T Consensus 475 dkL--iAT-~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~T-vKIW~is~fSClkT~eG--H~~ 548 (775)
T KOG0319|consen 475 DKL--IAT-GSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKT-VKIWSISTFSCLKTFEG--HTS 548 (775)
T ss_pred Cce--EEe-cccccceeeecccCceEEEEeeCCccceEEEEeccccceeEeccCCce-EEEEEeccceeeeeecC--ccc
Confidence 763 555 89999999988774 566788999999999999999999999999999 99999999999999998 889
Q ss_pred ceEEEEecCCCCEEEEEcCCCcEEEEEccCCCCCCCCCccccCCCCCccCCCCCceeeeeEeeeecceEEecccceeEEe
Q 018248 225 EIYSLAFSSNAQWLAASSDKGTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSAISSFRFIRGVLPKYFSSKWSMAQFR 304 (359)
Q Consensus 225 ~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (359)
.|..+.|-.+|+.|++++.||.+++|++++.++.. ++.
T Consensus 549 aVlra~F~~~~~qliS~~adGliKlWnikt~eC~~------------------------------------------tlD 586 (775)
T KOG0319|consen 549 AVLRASFIRNGKQLISAGADGLIKLWNIKTNECEM------------------------------------------TLD 586 (775)
T ss_pred eeEeeeeeeCCcEEEeccCCCcEEEEeccchhhhh------------------------------------------hhh
Confidence 99999999999999999999999999999988542 244
Q ss_pred ecCCcEEEeeecccCCEEEEEecCCeEEEEEeCCC
Q 018248 305 LPENVQYLVGFGRQNNTIVIVGLDGSYYKCEFDPM 339 (359)
Q Consensus 305 ~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~~ 339 (359)
.|.+.|++++-+|....+++|+.||.|.+|.=.++
T Consensus 587 ~H~DrvWaL~~~~~~~~~~tgg~Dg~i~~wkD~Te 621 (775)
T KOG0319|consen 587 AHNDRVWALSVSPLLDMFVTGGGDGRIIFWKDVTE 621 (775)
T ss_pred hccceeEEEeecCccceeEecCCCeEEEEeecCcH
Confidence 56789999999999999999999999999975443
No 43
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.1e-31 Score=229.28 Aligned_cols=280 Identities=13% Similarity=0.191 Sum_probs=232.3
Q ss_pred CCCCceEEEEEccCCCEEEEec-CCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEE
Q 018248 4 PDPITIHHLALNQDHGCFATGT-ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWD 82 (359)
Q Consensus 4 ~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd 82 (359)
+....|-.++|+|....++++- +|.|++||..-+..+ ..|. .|.++|..++|++....++ ++| .|.+|++|+
T Consensus 7 skSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli--~rFd-eHdGpVRgv~FH~~qplFV--SGG--DDykIkVWn 79 (1202)
T KOG0292|consen 7 SKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLI--DRFD-EHDGPVRGVDFHPTQPLFV--SGG--DDYKIKVWN 79 (1202)
T ss_pred cccccccceecCCCCCEEEEeecCceeeeehhhhhhHH--hhhh-ccCCccceeeecCCCCeEE--ecC--CccEEEEEe
Confidence 4567899999999999999999 999999999865444 4455 8999999999987766544 444 689999999
Q ss_pred CCCccEEeeec-cCcceeEEEEecceeEEE---ecCeEEEEEcccceeeeeEeccCCCceeeeeecCCCccEEEecCCCC
Q 018248 83 DHENRYLGELS-FRSEVKNVRLRRDRIVVV---LNQKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAGPMVMACPGLLK 158 (359)
Q Consensus 83 ~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d 158 (359)
.++.+++.++. |-+-|+.+.|++.-.+++ .|.+|+||+.++++++..+.+|.+-|.+..|+|..+. +++ ++-|
T Consensus 80 Yk~rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDl--IVS-aSLD 156 (1202)
T KOG0292|consen 80 YKTRRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDL--IVS-ASLD 156 (1202)
T ss_pred cccceehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccce--EEE-eccc
Confidence 99999999988 999999999999998887 8899999999999999999999999999999998774 444 7789
Q ss_pred eeEEEEecCCe------------------------------eeEEeecccccccEEEEccCCcEEEEEeCCCCeEEEEEc
Q 018248 159 GQVRVEDYGTK------------------------------KSKYITAHASRIASIAMTLDGRFVATASSKGTLIRVFNT 208 (359)
Q Consensus 159 ~~v~~~~~~~~------------------------------~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~ 208 (359)
-+|++|+..+- ....+.+|...|+-++|+|.-.++++|++|.. |++|.+
T Consensus 157 QTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRq-VKlWrm 235 (1202)
T KOG0292|consen 157 QTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQ-VKLWRM 235 (1202)
T ss_pred ceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcce-eeEEEe
Confidence 99999997641 02345789999999999999999999999999 999998
Q ss_pred CCCc--EEEEeecCCCCcceEEEEecCCCCEEEEEcCCCcEEEEEccCCCCCCCCCccccCCCCCccCCCCCceeeeeEe
Q 018248 209 MDGS--LLQEMRRGAERAEIYSLAFSSNAQWLAASSDKGTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSAISSFRFI 286 (359)
Q Consensus 209 ~~~~--~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (359)
...+ .+.+..+ |.+.|.++-|+|...++++.++|++|+|||+...+...
T Consensus 236 netKaWEvDtcrg--H~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~--------------------------- 286 (1202)
T KOG0292|consen 236 NETKAWEVDTCRG--HYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQ--------------------------- 286 (1202)
T ss_pred ccccceeehhhhc--ccCCcceEEecCccceeEecCCCccEEEEeccccccee---------------------------
Confidence 6544 3445555 77899999999999999999999999999999877331
Q ss_pred eeecceEEecccceeEEeecCCcEEEeeecccCCEEEEEecCCeEEEEEeCCC
Q 018248 287 RGVLPKYFSSKWSMAQFRLPENVQYLVGFGRQNNTIVIVGLDGSYYKCEFDPM 339 (359)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~~ 339 (359)
+++-..+.-+.++-+|..+.+++ +.|+-+.||.++.+
T Consensus 287 ---------------tfrrendRFW~laahP~lNLfAA-gHDsGm~VFkleRE 323 (1202)
T KOG0292|consen 287 ---------------TFRRENDRFWILAAHPELNLFAA-GHDSGMIVFKLERE 323 (1202)
T ss_pred ---------------eeeccCCeEEEEEecCCcceeee-ecCCceEEEEEccc
Confidence 12223456678888998777665 45555778888865
No 44
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=1.2e-31 Score=203.74 Aligned_cols=249 Identities=14% Similarity=0.169 Sum_probs=205.2
Q ss_pred cCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEECC-CccEEeeec-cCcceeEEEEecceeEEE---ecCeEEEEEc
Q 018248 47 RNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDDH-ENRYLGELS-FRSEVKNVRLRRDRIVVV---LNQKVYVYNF 121 (359)
Q Consensus 47 ~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~~-~~~~~~~~~-~~~~v~~~~~~~~~~~~~---~d~~i~i~d~ 121 (359)
+||.+.|..+.|.|++..++..+ .|..|.+|++. ..+....++ |.+.|..+.|.+++..++ .|.+++.||.
T Consensus 44 ~gh~geI~~~~F~P~gs~~aSgG----~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~ 119 (338)
T KOG0265|consen 44 PGHKGEIYTIKFHPDGSCFASGG----SDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDA 119 (338)
T ss_pred CCCcceEEEEEECCCCCeEeecC----CcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEEec
Confidence 39999999999999877777666 79999999954 345566666 999999999999998887 8999999999
Q ss_pred ccceeeeeEeccCCCceeeeeecCCCccEEEecCCCCeeEEEEecCCeeeEEeecccccccEEEEccCCcEEEEEeCCCC
Q 018248 122 TDLKLVDQIETVVNPTGLCDVSQNAGPMVMACPGLLKGQVRVEDYGTKKSKYITAHASRIASIAMTLDGRFVATASSKGT 201 (359)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~v~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~ 201 (359)
++|+.++.++.|..-++.+. |...+..++++|+.|+++++|+.+.+........+.+++++.|..++..+.+|+-|+.
T Consensus 120 ~tG~~~rk~k~h~~~vNs~~--p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~kyqltAv~f~d~s~qv~sggIdn~ 197 (338)
T KOG0265|consen 120 ETGKRIRKHKGHTSFVNSLD--PSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFENKYQLTAVGFKDTSDQVISGGIDND 197 (338)
T ss_pred ccceeeehhccccceeeecC--ccccCCeEEEecCCCceEEEEeecccchhhccccceeEEEEEecccccceeeccccCc
Confidence 99999999999999888776 6666666888899999999999887554444456778999999999999999999999
Q ss_pred eEEEEEcCCCcEEEEeecCCCCcceEEEEecCCCCEEEEEcCCCcEEEEEccCCCCCCCCCccccCCCCCccCCCCCcee
Q 018248 202 LIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSNAQWLAASSDKGTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSAIS 281 (359)
Q Consensus 202 ~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (359)
|++||++....+..+.+ |..+|+.+..+|+|.++.+-+.|.++++||++.-.+...
T Consensus 198 -ikvWd~r~~d~~~~lsG--h~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R--------------------- 253 (338)
T KOG0265|consen 198 -IKVWDLRKNDGLYTLSG--HADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQR--------------------- 253 (338)
T ss_pred -eeeeccccCcceEEeec--ccCceeeEEeccCCCccccccccceEEEEEecccCCCCc---------------------
Confidence 99999999999999998 778999999999999999999999999999987553210
Q ss_pred eeeEeeeecceEEecccceeEEeecCCcEEEeeecccCCEEEEEecCCeEEEEEeCC
Q 018248 282 SFRFIRGVLPKYFSSKWSMAQFRLPENVQYLVGFGRQNNTIVIVGLDGSYYKCEFDP 338 (359)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~ 338 (359)
....+... ...+ +-....++|+|++..+-+|+.|..+++|+...
T Consensus 254 --------~v~if~g~--~hnf---eknlL~cswsp~~~~i~ags~dr~vyvwd~~~ 297 (338)
T KOG0265|consen 254 --------CVKIFQGH--IHNF---EKNLLKCSWSPNGTKITAGSADRFVYVWDTTS 297 (338)
T ss_pred --------eEEEeecc--hhhh---hhhcceeeccCCCCccccccccceEEEeeccc
Confidence 00111111 0001 12235689999999999999999999997654
No 45
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.6e-31 Score=226.09 Aligned_cols=278 Identities=14% Similarity=0.166 Sum_probs=234.9
Q ss_pred CCCCCceEEEEEccCCCEEEEecCCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEE
Q 018248 3 QPDPITIHHLALNQDHGCFATGTETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWD 82 (359)
Q Consensus 3 ~~h~~~v~~~~~s~~g~~l~~~~d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd 82 (359)
+.|...|.++++|.|...+++|..+.++||+.++.+.+ +++. .+.+.+..|.|.++++++.. ..|.+.++|
T Consensus 370 ~GHR~dVRsl~vS~d~~~~~Sga~~SikiWn~~t~kci--RTi~---~~y~l~~~Fvpgd~~Iv~G~----k~Gel~vfd 440 (888)
T KOG0306|consen 370 GGHRSDVRSLCVSSDSILLASGAGESIKIWNRDTLKCI--RTIT---CGYILASKFVPGDRYIVLGT----KNGELQVFD 440 (888)
T ss_pred ccchhheeEEEeecCceeeeecCCCcEEEEEccCccee--EEec---cccEEEEEecCCCceEEEec----cCCceEEEE
Confidence 45889999999999999999999999999999987666 5654 56777788888888887776 679999999
Q ss_pred CCCccEEeeec-cCcceeEEEEecceeEEE---ecCeEEEEEccc-----ceee--------eeEeccCCCceeeeeecC
Q 018248 83 DHENRYLGELS-FRSEVKNVRLRRDRIVVV---LNQKVYVYNFTD-----LKLV--------DQIETVVNPTGLCDVSQN 145 (359)
Q Consensus 83 ~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~---~d~~i~i~d~~~-----~~~~--------~~~~~~~~~~~~~~~~~~ 145 (359)
+.....+.+++ |.+.|++++.+||+..++ .|.+|++||+.- +... ++++ -...+.++.++|+
T Consensus 441 laS~~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLe-l~ddvL~v~~Spd 519 (888)
T KOG0306|consen 441 LASASLVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLE-LEDDVLCVSVSPD 519 (888)
T ss_pred eehhhhhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEe-ccccEEEEEEcCC
Confidence 99999998888 999999999999988776 899999999832 1111 1222 2456778888888
Q ss_pred CCccEEEecCCCCeeEEE-EecCCeeeEEeecccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcEEEEeecCCCCc
Q 018248 146 AGPMVMACPGLLKGQVRV-EDYGTKKSKYITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRRGAERA 224 (359)
Q Consensus 146 ~~~~~l~~~g~~d~~v~~-~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~~~~~~~~~~~~ 224 (359)
++. ||. +--|++|++ +..+.+....+.+|.-||.|+.+|||+++++|||.|.. |++|-+.=|.+-+.+-+ |..
T Consensus 520 gk~--LaV-sLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKn-VKiWGLdFGDCHKS~fA--HdD 593 (888)
T KOG0306|consen 520 GKL--LAV-SLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKN-VKIWGLDFGDCHKSFFA--HDD 593 (888)
T ss_pred CcE--EEE-EeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCCc-eEEeccccchhhhhhhc--ccC
Confidence 875 665 668999999 55555777789999999999999999999999999999 99999999999999887 778
Q ss_pred ceEEEEecCCCCEEEEEcCCCcEEEEEccCCCCCCCCCccccCCCCCccCCCCCceeeeeEeeeecceEEecccceeEEe
Q 018248 225 EIYSLAFSSNAQWLAASSDKGTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSAISSFRFIRGVLPKYFSSKWSMAQFR 304 (359)
Q Consensus 225 ~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (359)
.|.++.|-|+...+.+++.|+.|+-||-+.-+.. ..+.
T Consensus 594 Svm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~i------------------------------------------q~L~ 631 (888)
T KOG0306|consen 594 SVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEI------------------------------------------QKLD 631 (888)
T ss_pred ceeEEEEcccceeEEEecCcceEEeechhhhhhh------------------------------------------eeec
Confidence 9999999999999999999999999998875522 1134
Q ss_pred ecCCcEEEeeecccCCEEEEEecCCeEEEEEeCC
Q 018248 305 LPENVQYLVGFGRQNNTIVIVGLDGSYYKCEFDP 338 (359)
Q Consensus 305 ~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~ 338 (359)
.|...|++++.+|+|.++++++.|.+|++|.-..
T Consensus 632 ~H~~ev~cLav~~~G~~vvs~shD~sIRlwE~td 665 (888)
T KOG0306|consen 632 GHHSEVWCLAVSPNGSFVVSSSHDKSIRLWERTD 665 (888)
T ss_pred cchheeeeeEEcCCCCeEEeccCCceeEeeeccC
Confidence 4567899999999999999999999999998654
No 46
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.5e-29 Score=193.94 Aligned_cols=278 Identities=15% Similarity=0.237 Sum_probs=219.1
Q ss_pred CCCceEEEEEccCCCEEEEec-CCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEEC
Q 018248 5 DPITIHHLALNQDHGCFATGT-ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDD 83 (359)
Q Consensus 5 h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~ 83 (359)
....|.++.|+++|.++++++ |..++|||...++...... .+...+..+++....+.++.++.. .|.+|+..++
T Consensus 13 ~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~---skkyG~~~~~Fth~~~~~i~sStk--~d~tIryLsl 87 (311)
T KOG1446|consen 13 TNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTIN---SKKYGVDLACFTHHSNTVIHSSTK--EDDTIRYLSL 87 (311)
T ss_pred CCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEee---cccccccEEEEecCCceEEEccCC--CCCceEEEEe
Confidence 468899999999999999988 8899999999877664433 346788888998888877777654 5899999999
Q ss_pred CCccEEeeec-cCcceeEEEEecceeEEE---ecCeEEEEEcccceeeeeEeccCCCceeeeeecCCCccEEEecCCCCe
Q 018248 84 HENRYLGELS-FRSEVKNVRLRRDRIVVV---LNQKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAGPMVMACPGLLKG 159 (359)
Q Consensus 84 ~~~~~~~~~~-~~~~v~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~ 159 (359)
.+++.++-+. |...|.+++.+|-+..++ .|++|++||++..++...+..... .++++.|.| +++|. +...+
T Consensus 88 ~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~--pi~AfDp~G--LifA~-~~~~~ 162 (311)
T KOG1446|consen 88 HDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGR--PIAAFDPEG--LIFAL-ANGSE 162 (311)
T ss_pred ecCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCCC--cceeECCCC--cEEEE-ecCCC
Confidence 9999999999 999999999999776655 899999999998887777665443 456777766 45665 44455
Q ss_pred eEEEEecCC---eeeEEee---cccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcEEEEeecCCCCc-ceEEEEec
Q 018248 160 QVRVEDYGT---KKSKYIT---AHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRRGAERA-EIYSLAFS 232 (359)
Q Consensus 160 ~v~~~~~~~---~~~~~~~---~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~~~~~~~~~~~~-~i~~~~~s 232 (359)
.|++++.+. .+...+. +.....+.+.|||||++|+.+...+. +++.|.-+|..+..+....... --.+..|+
T Consensus 163 ~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~-~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ft 241 (311)
T KOG1446|consen 163 LIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASF-IYLLDAFDGTVKSTFSGYPNAGNLPLSATFT 241 (311)
T ss_pred eEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCc-EEEEEccCCcEeeeEeeccCCCCcceeEEEC
Confidence 899977654 4444443 34667899999999999999999999 9999999999998887643333 22578899
Q ss_pred CCCCEEEEEcCCCcEEEEEccCCCCCCCCCccccCCCCCccCCCCCceeeeeEeeeecceEEecccceeEEeec-CCcEE
Q 018248 233 SNAQWLAASSDKGTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSAISSFRFIRGVLPKYFSSKWSMAQFRLP-ENVQY 311 (359)
Q Consensus 233 ~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~ 311 (359)
||++++++|+.||+|.+|+++++.+.. .++.+ .+++.
T Consensus 242 Pds~Fvl~gs~dg~i~vw~~~tg~~v~------------------------------------------~~~~~~~~~~~ 279 (311)
T KOG1446|consen 242 PDSKFVLSGSDDGTIHVWNLETGKKVA------------------------------------------VLRGPNGGPVS 279 (311)
T ss_pred CCCcEEEEecCCCcEEEEEcCCCcEee------------------------------------------EecCCCCCCcc
Confidence 999999999999999999998887321 12222 46778
Q ss_pred EeeecccCCEEEEEecCCeEEEEEeC
Q 018248 312 LVGFGRQNNTIVIVGLDGSYYKCEFD 337 (359)
Q Consensus 312 ~~~~s~~~~~l~~~~~dg~i~v~~~~ 337 (359)
++.|.|. +...++++..+..|-.+
T Consensus 280 ~~~fnP~--~~mf~sa~s~l~fw~p~ 303 (311)
T KOG1446|consen 280 CVRFNPR--YAMFVSASSNLVFWLPD 303 (311)
T ss_pred ccccCCc--eeeeeecCceEEEEecc
Confidence 8899996 55556677778888544
No 47
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=9.6e-31 Score=196.12 Aligned_cols=237 Identities=16% Similarity=0.253 Sum_probs=198.5
Q ss_pred CCCCCCceEEEEEccCCCEEEEec-CCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEE
Q 018248 2 NQPDPITIHHLALNQDHGCFATGT-ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMI 80 (359)
Q Consensus 2 ~~~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~i 80 (359)
+..|+..|.+++|+|.|++||+|+ |.++.||.-..++......++ ||..+|.+++|+.+++++++++ .|+.|.|
T Consensus 57 d~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~efecv~~lE-GHEnEVK~Vaws~sG~~LATCS----RDKSVWi 131 (312)
T KOG0645|consen 57 DDGHKRSVRSVAWSPHGRYLASASFDATVVIWKKEDGEFECVATLE-GHENEVKCVAWSASGNYLATCS----RDKSVWI 131 (312)
T ss_pred cccchheeeeeeecCCCcEEEEeeccceEEEeecCCCceeEEeeee-ccccceeEEEEcCCCCEEEEee----CCCeEEE
Confidence 457999999999999999999999 999999998877777778888 9999999999999999999999 8999999
Q ss_pred EECCCc---cEEeeec-cCcceeEEEEecceeEEE---ecCeEEEEEcc---cceeeeeEeccCCCceeeeeecCCCccE
Q 018248 81 WDDHEN---RYLGELS-FRSEVKNVRLRRDRIVVV---LNQKVYVYNFT---DLKLVDQIETVVNPTGLCDVSQNAGPMV 150 (359)
Q Consensus 81 wd~~~~---~~~~~~~-~~~~v~~~~~~~~~~~~~---~d~~i~i~d~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (359)
|.+..+ +++..++ |...|..+.|+|...+|+ .|++|++|+-. +-++.+++.+|.+.+.+++|.+.+..
T Consensus 132 We~deddEfec~aVL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~r-- 209 (312)
T KOG0645|consen 132 WEIDEDDEFECIAVLQEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSR-- 209 (312)
T ss_pred EEecCCCcEEEEeeeccccccccEEEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCce--
Confidence 998754 5666777 999999999999887777 89999999875 34678899999999999999998876
Q ss_pred EEecCCCCeeEEEEecCCeeeEEeecccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCC------cEEEEeecCCCCc
Q 018248 151 MACPGLLKGQVRVEDYGTKKSKYITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDG------SLLQEMRRGAERA 224 (359)
Q Consensus 151 l~~~g~~d~~v~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~------~~~~~~~~~~~~~ 224 (359)
+++ ++.|++++||...... -..|...+..+.|. ...|++++.|+. |++|..... +.+... .+.|..
T Consensus 210 l~s-~sdD~tv~Iw~~~~~~---~~~~sr~~Y~v~W~--~~~IaS~ggD~~-i~lf~~s~~~d~p~~~l~~~~-~~aHe~ 281 (312)
T KOG0645|consen 210 LVS-CSDDGTVSIWRLYTDL---SGMHSRALYDVPWD--NGVIASGGGDDA-IRLFKESDSPDEPSWNLLAKK-EGAHEV 281 (312)
T ss_pred EEE-ecCCcceEeeeeccCc---chhcccceEeeeec--ccceEeccCCCE-EEEEEecCCCCCchHHHHHhh-hccccc
Confidence 666 6789999998754211 13467889999998 447999999999 999976542 112212 234778
Q ss_pred ceEEEEecCC-CCEEEEEcCCCcEEEEEcc
Q 018248 225 EIYSLAFSSN-AQWLAASSDKGTVHVFGLK 253 (359)
Q Consensus 225 ~i~~~~~s~~-~~~l~~~~~dg~i~iw~~~ 253 (359)
.|++++|.|. ..+|+++++||.|++|.+.
T Consensus 282 dVNsV~w~p~~~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 282 DVNSVQWNPKVSNRLASGGDDGIVNFWELE 311 (312)
T ss_pred ccceEEEcCCCCCceeecCCCceEEEEEec
Confidence 9999999994 6799999999999999875
No 48
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=4.7e-31 Score=226.40 Aligned_cols=287 Identities=13% Similarity=0.146 Sum_probs=207.0
Q ss_pred CCCCCceEEEEEccCCCEEEEec-CCceEEEEcCCCcceeeeecccCCCCc----------eeEEEEec---cCCEEEEE
Q 018248 3 QPDPITIHHLALNQDHGCFATGT-ETGFRVYLSDPYKPIMRRDFDRNPRGG----------TQLVSMLF---RSNIICLV 68 (359)
Q Consensus 3 ~~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~h~~~----------v~~~~~~~---~~~~~~~~ 68 (359)
.+|++.|++|.||+||+|||+|+ |+.|+||.+...+.. .... +.... +..+.... .......-
T Consensus 264 ~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~-~~~~--~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~ 340 (712)
T KOG0283|consen 264 NAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERM-RVAE--GDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSR 340 (712)
T ss_pred cccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchh-cccc--cccchhhhhhhhccccCccccccccccccccccc
Confidence 37999999999999999999999 999999998642221 1110 00000 00000000 00000000
Q ss_pred ecCCCCCCeEEEEECC----CccEEeeec-cCcceeEEEEecceeEEE--ecCeEEEEEcccceeeeeEeccCCCceeee
Q 018248 69 NSGPHQSNKVMIWDDH----ENRYLGELS-FRSEVKNVRLRRDRIVVV--LNQKVYVYNFTDLKLVDQIETVVNPTGLCD 141 (359)
Q Consensus 69 ~~~~~~d~~i~iwd~~----~~~~~~~~~-~~~~v~~~~~~~~~~~~~--~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~ 141 (359)
.+. .... .+.+.. ..++++.+. |.+.|.++.|+.++.+|. .|.+|++|++...+++..|. |..-|++++
T Consensus 341 ~~~--~s~~-~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~fLLSSSMDKTVRLWh~~~~~CL~~F~-HndfVTcVa 416 (712)
T KOG0283|consen 341 KGS--QSPC-VLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNNFLLSSSMDKTVRLWHPGRKECLKVFS-HNDFVTCVA 416 (712)
T ss_pred ccc--CCcc-ccCCCccccccccchhhhhccchhheecccccCCeeEeccccccEEeecCCCcceeeEEe-cCCeeEEEE
Confidence 000 1111 122211 236777777 999999999999998888 99999999999999998885 788999999
Q ss_pred eecCCCccEEEecCCCCeeEEEEecCCeeeEEeecccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcEEEEeecCC
Q 018248 142 VSQNAGPMVMACPGLLKGQVRVEDYGTKKSKYITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRRGA 221 (359)
Q Consensus 142 ~~~~~~~~~l~~~g~~d~~v~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~~~~~~~~~ 221 (359)
|+|-.+.. +++ |+-|+.|+||......+.....-..-|++++|+|||++.++|+.+|. +++|++...+....+....
T Consensus 417 FnPvDDry-FiS-GSLD~KvRiWsI~d~~Vv~W~Dl~~lITAvcy~PdGk~avIGt~~G~-C~fY~t~~lk~~~~~~I~~ 493 (712)
T KOG0283|consen 417 FNPVDDRY-FIS-GSLDGKVRLWSISDKKVVDWNDLRDLITAVCYSPDGKGAVIGTFNGY-CRFYDTEGLKLVSDFHIRL 493 (712)
T ss_pred ecccCCCc-Eee-cccccceEEeecCcCeeEeehhhhhhheeEEeccCCceEEEEEeccE-EEEEEccCCeEEEeeeEee
Confidence 99988763 444 99999999999999888888777799999999999999999999999 9999998877665544322
Q ss_pred C------CcceEEEEecCCC-CEEEEEcCCCcEEEEEccCCCCCCCCCccccCCCCCccCCCCCceeeeeEeeeecceEE
Q 018248 222 E------RAEIYSLAFSSNA-QWLAASSDKGTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSAISSFRFIRGVLPKYF 294 (359)
Q Consensus 222 ~------~~~i~~~~~s~~~-~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (359)
+ ...|+.+.|.|.. ..+++.+.|..|||+|.+...... .|
T Consensus 494 ~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~---------------------------------Kf 540 (712)
T KOG0283|consen 494 HNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVH---------------------------------KF 540 (712)
T ss_pred ccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhh---------------------------------hh
Confidence 2 2379999999743 346667889999999997655221 11
Q ss_pred ecccceeEEeecCCcEEEeeecccCCEEEEEecCCeEEEEEeCCC
Q 018248 295 SSKWSMAQFRLPENVQYLVGFGRQNNTIVIVGLDGSYYKCEFDPM 339 (359)
Q Consensus 295 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~~ 339 (359)
... + ....-....|+.||++|+++++|..||+|+++..
T Consensus 541 KG~------~-n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~~~ 578 (712)
T KOG0283|consen 541 KGF------R-NTSSQISASFSSDGKHIVSASEDSWVYIWKNDSF 578 (712)
T ss_pred ccc------c-cCCcceeeeEccCCCEEEEeecCceEEEEeCCCC
Confidence 111 0 0123356789999999999999999999998654
No 49
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=1.8e-30 Score=225.56 Aligned_cols=243 Identities=19% Similarity=0.290 Sum_probs=202.3
Q ss_pred CCCceeEEEEeccCCEEEEEecCCCCCCeEEEEECCCcc--EEeeec-cCcceeEEEEecceeEEE---ecCeEEEEEc-
Q 018248 49 PRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDDHENR--YLGELS-FRSEVKNVRLRRDRIVVV---LNQKVYVYNF- 121 (359)
Q Consensus 49 h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~--~~~~~~-~~~~v~~~~~~~~~~~~~---~d~~i~i~d~- 121 (359)
|...+.++.++++++.++..+ .++.+++|+....+ ..+.+. |...|.+++|+|++.+++ .|++|++||+
T Consensus 158 ~~~sv~~~~fs~~g~~l~~~~----~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~ 233 (456)
T KOG0266|consen 158 ECPSVTCVDFSPDGRALAAAS----SDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLK 233 (456)
T ss_pred ccCceEEEEEcCCCCeEEEcc----CCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEeecc
Confidence 467888899999999877666 68999999997777 666665 899999999999998888 8999999999
Q ss_pred ccceeeeeEeccCCCceeeeeecCCCccEEEecCCCCeeEEEEecCC-eeeEEeecccccccEEEEccCCcEEEEEeCCC
Q 018248 122 TDLKLVDQIETVVNPTGLCDVSQNAGPMVMACPGLLKGQVRVEDYGT-KKSKYITAHASRIASIAMTLDGRFVATASSKG 200 (359)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~v~~~~~~~-~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg 200 (359)
..+..++++.+|...+.+++|+|.++ .+++ |+.|++|++|+.+. .+.+.+.+|...|++++|++++++|++++.|+
T Consensus 234 ~~~~~~~~l~gH~~~v~~~~f~p~g~--~i~S-gs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~ 310 (456)
T KOG0266|consen 234 DDGRNLKTLKGHSTYVTSVAFSPDGN--LLVS-GSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSASYDG 310 (456)
T ss_pred CCCeEEEEecCCCCceEEEEecCCCC--EEEE-ecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcCCCc
Confidence 56689999999999999999999994 2555 88899999999885 88899999999999999999999999999999
Q ss_pred CeEEEEEcCCCc--EEEEeecCCCCcceEEEEecCCCCEEEEEcCCCcEEEEEccCCCCCCCCCccccCCCCCccCCCCC
Q 018248 201 TLIRVFNTMDGS--LLQEMRRGAERAEIYSLAFSSNAQWLAASSDKGTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSS 278 (359)
Q Consensus 201 ~~i~iwd~~~~~--~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (359)
. |++||+.++. +...+.......+++++.|+|++++|++++.|+.+++||+..+....
T Consensus 311 ~-i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~------------------- 370 (456)
T KOG0266|consen 311 T-IRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVG------------------- 370 (456)
T ss_pred c-EEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCccee-------------------
Confidence 9 9999999999 55666654322269999999999999999999999999999876321
Q ss_pred ceeeeeEeeeecceEEecccceeEEeecCCcEEEeeecccCCEEEEEecCCeEEEEEeCC
Q 018248 279 AISSFRFIRGVLPKYFSSKWSMAQFRLPENVQYLVGFGRQNNTIVIVGLDGSYYKCEFDP 338 (359)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~ 338 (359)
.+.....- .-.+....+++.+..+++|+.|+.|++|++..
T Consensus 371 --------------~~~~~~~~------~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s 410 (456)
T KOG0266|consen 371 --------------TYTGHSNL------VRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSS 410 (456)
T ss_pred --------------eecccCCc------ceeEecccccCCCCeEEEEeCCceEEEEeCCc
Confidence 11111000 01234455588999999999999999998876
No 50
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1e-30 Score=194.28 Aligned_cols=276 Identities=14% Similarity=0.125 Sum_probs=213.1
Q ss_pred eEEEEEccC-CCEEEEe--------cCCceEEEEcC-CCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeE
Q 018248 9 IHHLALNQD-HGCFATG--------TETGFRVYLSD-PYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKV 78 (359)
Q Consensus 9 v~~~~~s~~-g~~l~~~--------~d~~i~iw~~~-~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i 78 (359)
=+++.|||- ..+||++ +.|.+.|.++. .........+. -.+.+..++|+.+...++++.. .||.+
T Consensus 11 GysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~d--~~D~LfdV~Wse~~e~~~~~a~---GDGSL 85 (311)
T KOG0277|consen 11 GYSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSYD--TEDGLFDVAWSENHENQVIAAS---GDGSL 85 (311)
T ss_pred cceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEEEEeee--cccceeEeeecCCCcceEEEEe---cCceE
Confidence 368899982 2333332 25778888886 33333333442 3677888999988766665555 47999
Q ss_pred EEEECCC-ccEEeeec-cCcceeEEEEecceeEEE----ecCeEEEEEcccceeeeeEeccCCCceeeeeecCCCccEEE
Q 018248 79 MIWDDHE-NRYLGELS-FRSEVKNVRLRRDRIVVV----LNQKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAGPMVMA 152 (359)
Q Consensus 79 ~iwd~~~-~~~~~~~~-~~~~v~~~~~~~~~~~~~----~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 152 (359)
++||... ..+++.++ |..+|.++.|++..+... .|++|++|+...++.+.++.+|...+...+|+|...++ ++
T Consensus 86 rl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nl-fa 164 (311)
T KOG0277|consen 86 RLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNL-FA 164 (311)
T ss_pred EEeccCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecCCCCCCe-EE
Confidence 9999543 46788888 999999999998654333 89999999999999999999999999999999988763 33
Q ss_pred ecCCCCeeEEEEecCC-eeeEEeecccccccEEEEcc-CCcEEEEEeCCCCeEEEEEcCCC-cEEEEeecCCCCcceEEE
Q 018248 153 CPGLLKGQVRVEDYGT-KKSKYITAHASRIASIAMTL-DGRFVATASSKGTLIRVFNTMDG-SLLQEMRRGAERAEIYSL 229 (359)
Q Consensus 153 ~~g~~d~~v~~~~~~~-~~~~~~~~~~~~i~~~~~s~-~~~~l~~~~~dg~~i~iwd~~~~-~~~~~~~~~~~~~~i~~~ 229 (359)
+ .+.|+.+++|+.+. .....+..|...|.++.|+. +...|+||+.|+. |++||+++- .++.++.+ |.-.|..+
T Consensus 165 s-~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~-vr~wDir~~r~pl~eL~g--h~~AVRkv 240 (311)
T KOG0277|consen 165 S-ASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNL-VRGWDIRNLRTPLFELNG--HGLAVRKV 240 (311)
T ss_pred E-ccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCCCce-EEEEehhhccccceeecC--CceEEEEE
Confidence 3 56799999988764 33444899999999999997 5568999999999 999999875 46677765 77899999
Q ss_pred EecCCC-CEEEEEcCCCcEEEEEccCCCCCCCCCccccCCCCCccCCCCCceeeeeEeeeecceEEecccceeEEeecCC
Q 018248 230 AFSSNA-QWLAASSDKGTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSAISSFRFIRGVLPKYFSSKWSMAQFRLPEN 308 (359)
Q Consensus 230 ~~s~~~-~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (359)
+|||.. ..|++++.|-+++|||...+... ..+...|.+
T Consensus 241 k~Sph~~~lLaSasYDmT~riw~~~~~ds~-----------------------------------------~e~~~~HtE 279 (311)
T KOG0277|consen 241 KFSPHHASLLASASYDMTVRIWDPERQDSA-----------------------------------------IETVDHHTE 279 (311)
T ss_pred ecCcchhhHhhhccccceEEecccccchhh-----------------------------------------hhhhhccce
Confidence 999964 58899999999999999876521 011223456
Q ss_pred cEEEeeecc-cCCEEEEEecCCeEEEEE
Q 018248 309 VQYLVGFGR-QNNTIVIVGLDGSYYKCE 335 (359)
Q Consensus 309 ~v~~~~~s~-~~~~l~~~~~dg~i~v~~ 335 (359)
-+..+.|++ ++.++|+.+.|+.++||+
T Consensus 280 Fv~g~Dws~~~~~~vAs~gWDe~l~Vw~ 307 (311)
T KOG0277|consen 280 FVCGLDWSLFDPGQVASTGWDELLYVWN 307 (311)
T ss_pred EEeccccccccCceeeecccccceeeec
Confidence 677888887 668999999999999996
No 51
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2e-29 Score=217.26 Aligned_cols=306 Identities=14% Similarity=0.227 Sum_probs=235.6
Q ss_pred CCCCCceEEEEEccCCCEEEEec-CCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEE
Q 018248 3 QPDPITIHHLALNQDHGCFATGT-ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIW 81 (359)
Q Consensus 3 ~~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iw 81 (359)
.+|.++|..++|+|++.++++|+ |-.|++|+....+.. .++. ||-+-|..+.|++.-..++.++ .|.+|+||
T Consensus 48 deHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrcl--ftL~-GHlDYVRt~~FHheyPWIlSAS----DDQTIrIW 120 (1202)
T KOG0292|consen 48 DEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCL--FTLL-GHLDYVRTVFFHHEYPWILSAS----DDQTIRIW 120 (1202)
T ss_pred hccCCccceeeecCCCCeEEecCCccEEEEEecccceeh--hhhc-cccceeEEeeccCCCceEEEcc----CCCeEEEE
Confidence 47999999999999999999999 899999999975554 4454 9999999999988777777777 79999999
Q ss_pred ECCCccEEeeec-cCcceeEEEEecceeEEE---ecCeEEEEEcccce-----------------------------eee
Q 018248 82 DDHENRYLGELS-FRSEVKNVRLRRDRIVVV---LNQKVYVYNFTDLK-----------------------------LVD 128 (359)
Q Consensus 82 d~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~---~d~~i~i~d~~~~~-----------------------------~~~ 128 (359)
+..+++++..+. |..-|.|.+|+|....++ .|.+|++||+...+ ..+
T Consensus 121 Nwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~ 200 (1202)
T KOG0292|consen 121 NWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKH 200 (1202)
T ss_pred eccCCceEEEEecCceEEEeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeee
Confidence 999999999999 999999999999776666 89999999984211 123
Q ss_pred eEeccCCCceeeeeecCCCccEEEecCCCCeeEEEEecCCee---eEEeecccccccEEEEccCCcEEEEEeCCCCeEEE
Q 018248 129 QIETVVNPTGLCDVSQNAGPMVMACPGLLKGQVRVEDYGTKK---SKYITAHASRIASIAMTLDGRFVATASSKGTLIRV 205 (359)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~v~~~~~~~~~---~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~i 205 (359)
.+++|...++.++|+|.-. +++ +|+.|..|++|..+... +.+..+|.+.|.++-|+|...++++.++|++ |+|
T Consensus 201 VLEGHDRGVNwaAfhpTlp--liV-SG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDks-irV 276 (1202)
T KOG0292|consen 201 VLEGHDRGVNWAAFHPTLP--LIV-SGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKS-IRV 276 (1202)
T ss_pred eecccccccceEEecCCcc--eEE-ecCCcceeeEEEeccccceeehhhhcccCCcceEEecCccceeEecCCCcc-EEE
Confidence 4577888888889888654 345 48899999999887643 4556899999999999999999999999999 999
Q ss_pred EEcCCCcEEEEeecCCCCcceEEEEecCCCCEEEEEcCCCcEEEEEccCCCCCCCCCccccCCCCCccCCCCCceeeeeE
Q 018248 206 FNTMDGSLLQEMRRGAERAEIYSLAFSSNAQWLAASSDKGTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSAISSFRF 285 (359)
Q Consensus 206 wd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (359)
||+...+.+++++. .....+.++-+|..+++++|- |+-+.||.++...+.. ......+-|
T Consensus 277 wDm~kRt~v~tfrr--endRFW~laahP~lNLfAAgH-DsGm~VFkleRErpa~-----------------~v~~n~LfY 336 (1202)
T KOG0292|consen 277 WDMTKRTSVQTFRR--ENDRFWILAAHPELNLFAAGH-DSGMIVFKLERERPAY-----------------AVNGNGLFY 336 (1202)
T ss_pred Eecccccceeeeec--cCCeEEEEEecCCcceeeeec-CCceEEEEEcccCceE-----------------EEcCCEEEE
Confidence 99999999999987 456889999999999888665 5558899998655321 112222333
Q ss_pred eeeecceEEecc----cceeEEeecC---CcEEEeeecccCCEEEEEec--CCeEEEEEeCCC
Q 018248 286 IRGVLPKYFSSK----WSMAQFRLPE---NVQYLVGFGRQNNTIVIVGL--DGSYYKCEFDPM 339 (359)
Q Consensus 286 ~~~~~~~~~~~~----~~~~~~~~~~---~~v~~~~~s~~~~~l~~~~~--dg~i~v~~~~~~ 339 (359)
++....+.++-. -.++.++.+. .+..++.++|..+.++.++. .|..-++.++.+
T Consensus 337 vkd~~i~~~d~~t~~d~~v~~lr~~g~~~~~~~smsYNpae~~vlics~~~n~~y~L~~ipk~ 399 (1202)
T KOG0292|consen 337 VKDRFIRSYDLRTQKDTAVASLRRPGTLWQPPRSLSYNPAENAVLICSNLDNGEYELVQIPKD 399 (1202)
T ss_pred EccceEEeeeccccccceeEeccCCCcccCCcceeeeccccCeEEEEeccCCCeEEEEEecCc
Confidence 332222221111 1233344443 56788999997666655543 566667777655
No 52
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.98 E-value=1e-30 Score=203.41 Aligned_cols=237 Identities=14% Similarity=0.189 Sum_probs=209.3
Q ss_pred CCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEECCCccEEeeec-cCcceeEEEEecceeEEE---ecCeEEEEEccc
Q 018248 48 NPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDDHENRYLGELS-FRSEVKNVRLRRDRIVVV---LNQKVYVYNFTD 123 (359)
Q Consensus 48 ~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~---~d~~i~i~d~~~ 123 (359)
||.+-|.++++.|....++..+ .|++++|||+.+|++..++. |-..|..+++++-..+++ .|+.|+.||++.
T Consensus 149 gHlgWVr~vavdP~n~wf~tgs----~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDLe~ 224 (460)
T KOG0285|consen 149 GHLGWVRSVAVDPGNEWFATGS----ADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLEY 224 (460)
T ss_pred hccceEEEEeeCCCceeEEecC----CCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEEEechh
Confidence 9999999999998877776666 78999999999999999999 999999999999988887 899999999999
Q ss_pred ceeeeeEeccCCCceeeeeecCCCccEEEecCCCCeeEEEEecCC-eeeEEeecccccccEEEEccCCcEEEEEeCCCCe
Q 018248 124 LKLVDQIETVVNPTGLCDVSQNAGPMVMACPGLLKGQVRVEDYGT-KKSKYITAHASRIASIAMTLDGRFVATASSKGTL 202 (359)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~v~~~~~~~-~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~~ 202 (359)
.+.++.+.+|-..+.++++.|.-+. +++ |+.|..+++|+.+. ..+..+.+|..+|.++.+.|-...+++|+.|++
T Consensus 225 nkvIR~YhGHlS~V~~L~lhPTldv--l~t-~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~t- 300 (460)
T KOG0285|consen 225 NKVIRHYHGHLSGVYCLDLHPTLDV--LVT-GGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSHDST- 300 (460)
T ss_pred hhhHHHhccccceeEEEecccccee--EEe-cCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEecCCce-
Confidence 9999999999999999999987764 555 77899999988876 567889999999999999998888999999999
Q ss_pred EEEEEcCCCcEEEEeecCCCCcceEEEEecCCCCEEEEEcCCCcEEEEEccCCCCCCCCCccccCCCCCccCCCCCceee
Q 018248 203 IRVFNTMDGSLLQEMRRGAERAEIYSLAFSSNAQWLAASSDKGTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSAISS 282 (359)
Q Consensus 203 i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (359)
|++||++.|+....+.. |...+.+++.+|....+|+++.|. |+-|++..+.-..
T Consensus 301 vrlWDl~agkt~~tlt~--hkksvral~lhP~e~~fASas~dn-ik~w~~p~g~f~~----------------------- 354 (460)
T KOG0285|consen 301 VRLWDLRAGKTMITLTH--HKKSVRALCLHPKENLFASASPDN-IKQWKLPEGEFLQ----------------------- 354 (460)
T ss_pred EEEeeeccCceeEeeec--ccceeeEEecCCchhhhhccCCcc-ceeccCCccchhh-----------------------
Confidence 99999999999888876 788999999999999999999886 9999998876221
Q ss_pred eeEeeeecceEEecccceeEEeecCCcEEEeeecccCCEEEEEecCCeEEEEEeCC
Q 018248 283 FRFIRGVLPKYFSSKWSMAQFRLPENVQYLVGFGRQNNTIVIVGLDGSYYKCEFDP 338 (359)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~ 338 (359)
.+..+...+++++...| ..+++|+++|.+..|++..
T Consensus 355 -------------------nlsgh~~iintl~~nsD-~v~~~G~dng~~~fwdwks 390 (460)
T KOG0285|consen 355 -------------------NLSGHNAIINTLSVNSD-GVLVSGGDNGSIMFWDWKS 390 (460)
T ss_pred -------------------ccccccceeeeeeeccC-ceEEEcCCceEEEEEecCc
Confidence 13345667888888777 7889999999999999876
No 53
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.98 E-value=1.7e-30 Score=211.23 Aligned_cols=285 Identities=15% Similarity=0.206 Sum_probs=213.3
Q ss_pred CCCCCceEEEEEccCCCEEEEec-CCceEEEEcCCCcce--eeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEE
Q 018248 3 QPDPITIHHLALNQDHGCFATGT-ETGFRVYLSDPYKPI--MRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVM 79 (359)
Q Consensus 3 ~~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~--~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~ 79 (359)
+.|...|.++++.|.|.+|++|+ |..|++||+...... ..+.+.+...+.+..+.+++.++.++++++. ...+
T Consensus 164 ~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~----aqak 239 (641)
T KOG0772|consen 164 KHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGS----AQAK 239 (641)
T ss_pred cCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecC----ccee
Confidence 35678899999999999999999 999999999854322 2233434557789999999999999888854 6788
Q ss_pred EEECCCccEEeee-------------c-cCcceeEEEEeccee--EEE--ecCeEEEEEcccc-eeeeeEec-----cCC
Q 018248 80 IWDDHENRYLGEL-------------S-FRSEVKNVRLRRDRI--VVV--LNQKVYVYNFTDL-KLVDQIET-----VVN 135 (359)
Q Consensus 80 iwd~~~~~~~~~~-------------~-~~~~v~~~~~~~~~~--~~~--~d~~i~i~d~~~~-~~~~~~~~-----~~~ 135 (359)
++| +.|..+.++ + |...+++.+|+|..+ ++. .||++++||+... +.+..++. ..-
T Consensus 240 l~D-RdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv 318 (641)
T KOG0772|consen 240 LLD-RDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRV 318 (641)
T ss_pred EEc-cCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCccc
Confidence 998 444332222 2 667889999999754 333 9999999999553 33333332 334
Q ss_pred CceeeeeecCCCccEEEecCCCCeeEEEEecCCee----eEEeecccc--cccEEEEccCCcEEEEEeCCCCeEEEEEcC
Q 018248 136 PTGLCDVSQNAGPMVMACPGLLKGQVRVEDYGTKK----SKYITAHAS--RIASIAMTLDGRFVATASSKGTLIRVFNTM 209 (359)
Q Consensus 136 ~~~~~~~~~~~~~~~l~~~g~~d~~v~~~~~~~~~----~~~~~~~~~--~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~ 209 (359)
++..++|+++++. +|+ |..||.|.+|+..... ...-.+|.. .|+|++||+||++|++-+.|++ +++||++
T Consensus 319 ~~tsC~~nrdg~~--iAa-gc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~t-LKvWDLr 394 (641)
T KOG0772|consen 319 PVTSCAWNRDGKL--IAA-GCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDT-LKVWDLR 394 (641)
T ss_pred CceeeecCCCcch--hhh-cccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCc-eeeeecc
Confidence 5678899999876 665 7789999999976532 233467877 8999999999999999999999 9999998
Q ss_pred CCc-EEEEeecCCCCcceEEEEecCCCCEEEEEcC------CCcEEEEEccCCCCCCCCCccccCCCCCccCCCCCceee
Q 018248 210 DGS-LLQEMRRGAERAEIYSLAFSSNAQWLAASSD------KGTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSAISS 282 (359)
Q Consensus 210 ~~~-~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~------dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (359)
+.+ ++....+-...-+-+.++|||+.++|++|+. .|++.+||..+-...
T Consensus 395 q~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v------------------------ 450 (641)
T KOG0772|consen 395 QFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTV------------------------ 450 (641)
T ss_pred ccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeE------------------------
Confidence 754 4544443323346678999999999999863 467888887764411
Q ss_pred eeEeeeecceEEecccceeEEeecCCcEEEeeecccCCEEEEEecCCeEEEEEeCCC
Q 018248 283 FRFIRGVLPKYFSSKWSMAQFRLPENVQYLVGFGRQNNTIVIVGLDGSYYKCEFDPM 339 (359)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~~ 339 (359)
..+..+...|..+.|+|.=++|.+|+.||.++|| +++.
T Consensus 451 ------------------~ki~i~~aSvv~~~WhpkLNQi~~gsgdG~~~vy-Ydp~ 488 (641)
T KOG0772|consen 451 ------------------YKIDISTASVVRCLWHPKLNQIFAGSGDGTAHVY-YDPN 488 (641)
T ss_pred ------------------EEecCCCceEEEEeecchhhheeeecCCCceEEE-ECcc
Confidence 1122334678889999999999999999999999 5543
No 54
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.98 E-value=5.8e-30 Score=200.47 Aligned_cols=278 Identities=14% Similarity=0.162 Sum_probs=214.3
Q ss_pred CCCCceEEEEEccCCCEEEEec-CCceEEEEcCCCcceeeeecccCCCCceeEEEEeccC-CEEEEEecCCCCCCeEEEE
Q 018248 4 PDPITIHHLALNQDHGCFATGT-ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRS-NIICLVNSGPHQSNKVMIW 81 (359)
Q Consensus 4 ~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~~~~~~~~~~~d~~i~iw 81 (359)
.|++.|.++... ++.+++|+ ||.+++|+... +.. ..+. ||.+++..+++.... ....+++++ .|.++++|
T Consensus 103 ~hdDWVSsv~~~--~~~IltgsYDg~~riWd~~G-k~~--~~~~-Ght~~ik~v~~v~~n~~~~~fvsas--~Dqtl~Lw 174 (423)
T KOG0313|consen 103 LHDDWVSSVKGA--SKWILTGSYDGTSRIWDLKG-KSI--KTIV-GHTGPIKSVAWVIKNSSSCLFVSAS--MDQTLRLW 174 (423)
T ss_pred cchhhhhhhccc--CceEEEeecCCeeEEEecCC-ceE--EEEe-cCCcceeeeEEEecCCccceEEEec--CCceEEEE
Confidence 478888888877 78999999 99999999884 333 2333 899999977766433 322333333 78999999
Q ss_pred ECCCccEEeee-----ccCcceeEEEEecceeEEE---ecCeEEEEEccc-------------------------ceeee
Q 018248 82 DDHENRYLGEL-----SFRSEVKNVRLRRDRIVVV---LNQKVYVYNFTD-------------------------LKLVD 128 (359)
Q Consensus 82 d~~~~~~~~~~-----~~~~~v~~~~~~~~~~~~~---~d~~i~i~d~~~-------------------------~~~~~ 128 (359)
.++.++..... .|...|.+++..+++..++ .|..|++|+..+ +.++.
T Consensus 175 ~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~v 254 (423)
T KOG0313|consen 175 KWNVGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLV 254 (423)
T ss_pred EecCchhhhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceE
Confidence 98877543322 3899999999999998888 899999999311 12566
Q ss_pred eEeccCCCceeeeeecCCCccEEEecCCCCeeEEEEecCCeeeEEeecccccccEEEEccCCcEEEEEeCCCCeEEEEEc
Q 018248 129 QIETVVNPTGLCDVSQNAGPMVMACPGLLKGQVRVEDYGTKKSKYITAHASRIASIAMTLDGRFVATASSKGTLIRVFNT 208 (359)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~v~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~ 208 (359)
.+.+|..+|..+.|++.. .+++++.|.+|+.|+........-......++++..+|..++|++|+.|.. |++||.
T Consensus 255 tl~GHt~~Vs~V~w~d~~----v~yS~SwDHTIk~WDletg~~~~~~~~~ksl~~i~~~~~~~Ll~~gssdr~-irl~DP 329 (423)
T KOG0313|consen 255 TLEGHTEPVSSVVWSDAT----VIYSVSWDHTIKVWDLETGGLKSTLTTNKSLNCISYSPLSKLLASGSSDRH-IRLWDP 329 (423)
T ss_pred EecccccceeeEEEcCCC----ceEeecccceEEEEEeecccceeeeecCcceeEeecccccceeeecCCCCc-eeecCC
Confidence 778899999999998833 444578999999998876544444445678999999999999999999999 999999
Q ss_pred CCCc---EEEEeecCCCCcceEEEEecCCC-CEEEEEcCCCcEEEEEccCCCCCCCCCccccCCCCCccCCCCCceeeee
Q 018248 209 MDGS---LLQEMRRGAERAEIYSLAFSSNA-QWLAASSDKGTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSAISSFR 284 (359)
Q Consensus 209 ~~~~---~~~~~~~~~~~~~i~~~~~s~~~-~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (359)
+++. ...++.+ |.+.|.++.|+|.. .+|++++.|+++++||+++....
T Consensus 330 R~~~gs~v~~s~~g--H~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~p-------------------------- 381 (423)
T KOG0313|consen 330 RTGDGSVVSQSLIG--HKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAP-------------------------- 381 (423)
T ss_pred CCCCCceeEEeeec--chhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCc--------------------------
Confidence 8764 3445655 78899999999965 46889999999999999987621
Q ss_pred EeeeecceEEecccceeEEeecCCcEEEeeecccCCEEEEEecCCeEEEEEeCC
Q 018248 285 FIRGVLPKYFSSKWSMAQFRLPENVQYLVGFGRQNNTIVIVGLDGSYYKCEFDP 338 (359)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~ 338 (359)
+-.+..|.+.|.++.|.. +..|++||.|.+|+|++-.+
T Consensus 382 ---------------lydI~~h~DKvl~vdW~~-~~~IvSGGaD~~l~i~~~~~ 419 (423)
T KOG0313|consen 382 ---------------LYDIAGHNDKVLSVDWNE-GGLIVSGGADNKLRIFKGSP 419 (423)
T ss_pred ---------------ceeeccCCceEEEEeccC-CceEEeccCcceEEEecccc
Confidence 111334567888899874 57999999999999997554
No 55
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.98 E-value=3.2e-30 Score=189.65 Aligned_cols=238 Identities=16% Similarity=0.216 Sum_probs=202.1
Q ss_pred CCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEECCCccEEeeec-cCcceeEEEEecceeEEE---ecCeEEEEEccc
Q 018248 48 NPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDDHENRYLGELS-FRSEVKNVRLRRDRIVVV---LNQKVYVYNFTD 123 (359)
Q Consensus 48 ~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~---~d~~i~i~d~~~ 123 (359)
+|.++|..+.+.-++++.+.++ .|.+|++|++..+.+++++. |..+|.+++.+.|+..++ .|..+.+||+.+
T Consensus 15 ~~qgaV~avryN~dGnY~ltcG----sdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~T 90 (307)
T KOG0316|consen 15 CAQGAVRAVRYNVDGNYCLTCG----SDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNT 90 (307)
T ss_pred ccccceEEEEEccCCCEEEEcC----CCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEEccc
Confidence 6789999999999999999888 78999999999999999999 999999999999887777 899999999999
Q ss_pred ceeeeeEeccCCCceeeeeecCCCccEEEecCCCCeeEEEEecCC---eeeEEeecccccccEEEEccCCcEEEEEeCCC
Q 018248 124 LKLVDQIETVVNPTGLCDVSQNAGPMVMACPGLLKGQVRVEDYGT---KKSKYITAHASRIASIAMTLDGRFVATASSKG 200 (359)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~v~~~~~~~---~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg 200 (359)
|+.++.+.+|...++.+.|+.+.. ++++ |+.|..+++|+-+. ++++.+......|.++..+ +..|++|+.||
T Consensus 91 Gkv~Rr~rgH~aqVNtV~fNeesS--Vv~S-gsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~--~heIvaGS~DG 165 (307)
T KOG0316|consen 91 GKVDRRFRGHLAQVNTVRFNEESS--VVAS-GSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA--EHEIVAGSVDG 165 (307)
T ss_pred CeeeeecccccceeeEEEecCcce--EEEe-ccccceeEEEEcccCCCCccchhhhhcCceeEEEec--ccEEEeeccCC
Confidence 999999999999999998876654 3555 88999999998765 6677777778889998874 56899999999
Q ss_pred CeEEEEEcCCCcEEEEeecCCCCcceEEEEecCCCCEEEEEcCCCcEEEEEccCCCCCCCCCccccCCCCCccCCCCCce
Q 018248 201 TLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSNAQWLAASSDKGTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSAI 280 (359)
Q Consensus 201 ~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (359)
+ ++.||++.|+....+.+ .+|++++|++|++..+.++.|+++++.|-++++-..
T Consensus 166 t-vRtydiR~G~l~sDy~g----~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~--------------------- 219 (307)
T KOG0316|consen 166 T-VRTYDIRKGTLSSDYFG----HPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLK--------------------- 219 (307)
T ss_pred c-EEEEEeecceeehhhcC----CcceeEEecCCCCEEEEeeccceeeecccchhHHHH---------------------
Confidence 9 99999999998877764 489999999999999999999999999999987221
Q ss_pred eeeeEeeeecceEEecccceeEEeecCCcEEEeeecccCCEEEEEecCCeEEEEEeCCC
Q 018248 281 SSFRFIRGVLPKYFSSKWSMAQFRLPENVQYLVGFGRQNNTIVIVGLDGSYYKCEFDPM 339 (359)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~~ 339 (359)
....+. ....-..++++.....+++|++||.|++|++..+
T Consensus 220 ------------sYkGhk-------n~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~ 259 (307)
T KOG0316|consen 220 ------------SYKGHK-------NMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDE 259 (307)
T ss_pred ------------Hhcccc-------cceeeeeeeecccceeEEeccCCceEEEEEeccc
Confidence 111110 0122345778887789999999999999998653
No 56
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=2.3e-30 Score=215.07 Aligned_cols=239 Identities=13% Similarity=0.135 Sum_probs=211.4
Q ss_pred CCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEECCCccEEeeec-cCcceeEEEEecceeEEE---ecCeEEEEEccc
Q 018248 48 NPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDDHENRYLGELS-FRSEVKNVRLRRDRIVVV---LNQKVYVYNFTD 123 (359)
Q Consensus 48 ~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~---~d~~i~i~d~~~ 123 (359)
.|+..|.++.++|....++..- .+|.|.|||.++...+..+. .+.+|++..|-+..++++ .|..|++|+..+
T Consensus 11 ~rSdRVKsVd~HPtePw~la~L----ynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt 86 (794)
T KOG0276|consen 11 SRSDRVKSVDFHPTEPWILAAL----YNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNT 86 (794)
T ss_pred ccCCceeeeecCCCCceEEEee----ecCeeEEEecccceeeeeeeecccchhhheeeeccceEEEecCCceEEEEeccc
Confidence 4789999999999988877766 67999999999999999999 788999999998888777 899999999999
Q ss_pred ceeeeeEeccCCCceeeeeecCCCccEEEecCCCCeeEEEEecCC--eeeEEeecccccccEEEEcc-CCcEEEEEeCCC
Q 018248 124 LKLVDQIETVVNPTGLCDVSQNAGPMVMACPGLLKGQVRVEDYGT--KKSKYITAHASRIASIAMTL-DGRFVATASSKG 200 (359)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~v~~~~~~~--~~~~~~~~~~~~i~~~~~s~-~~~~l~~~~~dg 200 (359)
++.++.++.|..-+.+++.+|.... +.+ ++.|-.|++|+.+. .+.+++.+|...|.+++|+| |.+.+|+++-|+
T Consensus 87 ~ekV~~FeAH~DyIR~iavHPt~P~--vLt-sSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDr 163 (794)
T KOG0276|consen 87 GEKVKTFEAHSDYIRSIAVHPTLPY--VLT-SSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDR 163 (794)
T ss_pred ceeeEEeeccccceeeeeecCCCCe--EEe-cCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeeccc
Confidence 9999999999999999999998764 555 67899999977766 67889999999999999999 566899999999
Q ss_pred CeEEEEEcCCCcEEEEeecCCCCcceEEEEecCCC--CEEEEEcCCCcEEEEEccCCCCCCCCCccccCCCCCccCCCCC
Q 018248 201 TLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSNA--QWLAASSDKGTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSS 278 (359)
Q Consensus 201 ~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~--~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (359)
+ |++|.+.+..+..++++ |...|+++.+-+-| .+|++|++|.+|+|||.++..+..
T Consensus 164 T-VKVWslgs~~~nfTl~g--HekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~------------------- 221 (794)
T KOG0276|consen 164 T-VKVWSLGSPHPNFTLEG--HEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQ------------------- 221 (794)
T ss_pred c-EEEEEcCCCCCceeeec--cccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHH-------------------
Confidence 9 99999999999999987 88899999998744 699999999999999999976431
Q ss_pred ceeeeeEeeeecceEEecccceeEEeecCCcEEEeeecccCCEEEEEecCCeEEEEEeCC
Q 018248 279 AISSFRFIRGVLPKYFSSKWSMAQFRLPENVQYLVGFGRQNNTIVIVGLDGSYYKCEFDP 338 (359)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~ 338 (359)
++..|...|..+.|+|.=..+++|++||+++||+-.+
T Consensus 222 -----------------------TLeGHt~Nvs~v~fhp~lpiiisgsEDGTvriWhs~T 258 (794)
T KOG0276|consen 222 -----------------------TLEGHTNNVSFVFFHPELPIIISGSEDGTVRIWNSKT 258 (794)
T ss_pred -----------------------HhhcccccceEEEecCCCcEEEEecCCccEEEecCcc
Confidence 2455677889999999999999999999999997543
No 57
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.97 E-value=6.8e-31 Score=204.55 Aligned_cols=279 Identities=12% Similarity=0.129 Sum_probs=223.2
Q ss_pred CCCCCceEEEEEccCC-CEEEEec-CCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEE
Q 018248 3 QPDPITIHHLALNQDH-GCFATGT-ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMI 80 (359)
Q Consensus 3 ~~h~~~v~~~~~s~~g-~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~i 80 (359)
..|.+.|.|++=+|.. ..+++|+ ||.|+|||+..-+.. ..+. +|.+.|..+++.. +.++.++ .|.+|+.
T Consensus 63 ~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~--~~f~-AH~G~V~Gi~v~~--~~~~tvg----dDKtvK~ 133 (433)
T KOG0268|consen 63 DGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECI--RTFK-AHEGLVRGICVTQ--TSFFTVG----DDKTVKQ 133 (433)
T ss_pred cccccccchhhcCcchhhhhhccccCceEEEEehhhhhhh--heee-cccCceeeEEecc--cceEEec----CCcceee
Confidence 4689999999999987 7889999 999999999865444 5555 8999999998876 5566666 6899999
Q ss_pred EECCCccEEeeeccCcceeEEEEecceeEEE-ecCeEEEEEcccceeeeeEeccCCCceeeeeecCCCccEEEecCCCCe
Q 018248 81 WDDHENRYLGELSFRSEVKNVRLRRDRIVVV-LNQKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAGPMVMACPGLLKG 159 (359)
Q Consensus 81 wd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~ 159 (359)
|.+.. .++.++-....+..+.-+..+..++ ....|.|||.+...++..+......+.++.++|.... +|++ +..|+
T Consensus 134 wk~~~-~p~~tilg~s~~~gIdh~~~~~~FaTcGe~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETs-ILas-~~sDr 210 (433)
T KOG0268|consen 134 WKIDG-PPLHTILGKSVYLGIDHHRKNSVFATCGEQIDIWDEQRDNPVSSMSWGADSISSVKFNPVETS-ILAS-CASDR 210 (433)
T ss_pred eeccC-CcceeeeccccccccccccccccccccCceeeecccccCCccceeecCCCceeEEecCCCcch-heee-eccCC
Confidence 99654 4677776777788888877777777 6778999999888899999888888899999998775 4555 44688
Q ss_pred eEEEEecCC-eeeEEeecccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCc-EEEEeecCCCCcceEEEEecCCCCE
Q 018248 160 QVRVEDYGT-KKSKYITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGS-LLQEMRRGAERAEIYSLAFSSNAQW 237 (359)
Q Consensus 160 ~v~~~~~~~-~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~-~~~~~~~~~~~~~i~~~~~s~~~~~ 237 (359)
.|.+++.+. .+++.+. -...-+.++|+|.+-.+++|++|.. ++.||++..+ ++..+.. |.+.|.+++|||.|+-
T Consensus 211 sIvLyD~R~~~Pl~KVi-~~mRTN~IswnPeafnF~~a~ED~n-lY~~DmR~l~~p~~v~~d--hvsAV~dVdfsptG~E 286 (433)
T KOG0268|consen 211 SIVLYDLRQASPLKKVI-LTMRTNTICWNPEAFNFVAANEDHN-LYTYDMRNLSRPLNVHKD--HVSAVMDVDFSPTGQE 286 (433)
T ss_pred ceEEEecccCCccceee-eeccccceecCccccceeecccccc-ceehhhhhhcccchhhcc--cceeEEEeccCCCcch
Confidence 999966554 4544433 3455688999998888899999999 9999998754 5555555 7789999999999999
Q ss_pred EEEEcCCCcEEEEEccCCCCCCCCCccccCCCCCccCCCCCceeeeeEeeeecceEEecccceeEEeecCCcEEEeeecc
Q 018248 238 LAASSDKGTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSAISSFRFIRGVLPKYFSSKWSMAQFRLPENVQYLVGFGR 317 (359)
Q Consensus 238 l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 317 (359)
+++|+.|.+|+||.++.+.... .+..+ .-..|.++.||-
T Consensus 287 fvsgsyDksIRIf~~~~~~SRd----------------------------iYhtk-------------RMq~V~~Vk~S~ 325 (433)
T KOG0268|consen 287 FVSGSYDKSIRIFPVNHGHSRD----------------------------IYHTK-------------RMQHVFCVKYSM 325 (433)
T ss_pred hccccccceEEEeecCCCcchh----------------------------hhhHh-------------hhheeeEEEEec
Confidence 9999999999999999876321 00000 013578999999
Q ss_pred cCCEEEEEecCCeEEEEEeCC
Q 018248 318 QNNTIVIVGLDGSYYKCEFDP 338 (359)
Q Consensus 318 ~~~~l~~~~~dg~i~v~~~~~ 338 (359)
|.+++++|++||.|++|+-..
T Consensus 326 Dskyi~SGSdd~nvRlWka~A 346 (433)
T KOG0268|consen 326 DSKYIISGSDDGNVRLWKAKA 346 (433)
T ss_pred cccEEEecCCCcceeeeecch
Confidence 999999999999999998654
No 58
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.97 E-value=1.6e-30 Score=205.65 Aligned_cols=278 Identities=13% Similarity=0.191 Sum_probs=223.9
Q ss_pred CCCCCceEEEEEccCCCEEEEec-CCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEE
Q 018248 3 QPDPITIHHLALNQDHGCFATGT-ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIW 81 (359)
Q Consensus 3 ~~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iw 81 (359)
..|...+..+.|-++...|++|+ |..|++|+....+.....++. |-.+++..+.+..++..++..+ .|+.+++|
T Consensus 172 d~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLa-Gs~g~it~~d~d~~~~~~iAas----~d~~~r~W 246 (459)
T KOG0288|consen 172 DAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLA-GSLGNITSIDFDSDNKHVIAAS----NDKNLRLW 246 (459)
T ss_pred hccccccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhh-ccCCCcceeeecCCCceEEeec----CCCceeee
Confidence 46889999999999999999999 999999999877655556665 6667899898888777777666 78999999
Q ss_pred ECCCccEEeeec-cCcceeEEEEecceeEEE---ecCeEEEEEcccceeeeeEeccCCCceeeeeecCCCccEEEecCCC
Q 018248 82 DDHENRYLGELS-FRSEVKNVRLRRDRIVVV---LNQKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAGPMVMACPGLL 157 (359)
Q Consensus 82 d~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~ 157 (359)
++...+...++. |.+.|+++.|......++ .|.+|++||+....+.+++-... .+..++.++ ..++ +|..
T Consensus 247 nvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~~S-~cnDI~~~~----~~~~-SgH~ 320 (459)
T KOG0288|consen 247 NVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVLPGS-QCNDIVCSI----SDVI-SGHF 320 (459)
T ss_pred eccchhhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhheeccccccc-cccceEecc----eeee-eccc
Confidence 999999999998 999999999987766444 89999999998887777654322 233334331 2244 4889
Q ss_pred CeeEEEEecCC-eeeEEeecccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcEEEEeecCC--CCcceEEEEecCC
Q 018248 158 KGQVRVEDYGT-KKSKYITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRRGA--ERAEIYSLAFSSN 234 (359)
Q Consensus 158 d~~v~~~~~~~-~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~~~~~~~~~--~~~~i~~~~~s~~ 234 (359)
|++|++|+.+. .+......+ +.|+++..+++|..|.+++.|.. +.+.|+++.+....+.... .....+.+.|||+
T Consensus 321 DkkvRfwD~Rs~~~~~sv~~g-g~vtSl~ls~~g~~lLsssRDdt-l~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd 398 (459)
T KOG0288|consen 321 DKKVRFWDIRSADKTRSVPLG-GRVTSLDLSMDGLELLSSSRDDT-LKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPD 398 (459)
T ss_pred ccceEEEeccCCceeeEeecC-cceeeEeeccCCeEEeeecCCCc-eeeeecccccEEEEeeccccccccccceeEECCC
Confidence 99999999554 555566555 49999999999999999999999 9999999999888776421 2235889999999
Q ss_pred CCEEEEEcCCCcEEEEEccCCCCCCCCCccccCCCCCccCCCCCceeeeeEeeeecceEEecccceeEEeecC--CcEEE
Q 018248 235 AQWLAASSDKGTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSAISSFRFIRGVLPKYFSSKWSMAQFRLPE--NVQYL 312 (359)
Q Consensus 235 ~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~v~~ 312 (359)
+.|+++|+.||.|+||++.+++... . +..+. ..|++
T Consensus 399 ~~YvaAGS~dgsv~iW~v~tgKlE~---------------------------------~---------l~~s~s~~aI~s 436 (459)
T KOG0288|consen 399 GSYVAAGSADGSVYIWSVFTGKLEK---------------------------------V---------LSLSTSNAAITS 436 (459)
T ss_pred CceeeeccCCCcEEEEEccCceEEE---------------------------------E---------eccCCCCcceEE
Confidence 9999999999999999999987321 0 11112 25899
Q ss_pred eeecccCCEEEEEecCCeEEEEE
Q 018248 313 VGFGRQNNTIVIVGLDGSYYKCE 335 (359)
Q Consensus 313 ~~~s~~~~~l~~~~~dg~i~v~~ 335 (359)
++|+|.|..|++++.++.+.+|.
T Consensus 437 ~~W~~sG~~Llsadk~~~v~lW~ 459 (459)
T KOG0288|consen 437 LSWNPSGSGLLSADKQKAVTLWT 459 (459)
T ss_pred EEEcCCCchhhcccCCcceEecC
Confidence 99999999999999999999983
No 59
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.97 E-value=1.5e-28 Score=203.42 Aligned_cols=235 Identities=19% Similarity=0.308 Sum_probs=200.0
Q ss_pred CCCCceEEEEEccCCCEEEEec-CCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEE
Q 018248 4 PDPITIHHLALNQDHGCFATGT-ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWD 82 (359)
Q Consensus 4 ~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd 82 (359)
.|...+..+.|+|++++|++++ ++.|++|++..++... .+. +|...+..+.+.+++..++..+ .++.+.+||
T Consensus 49 ~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~--~~~-~~~~~i~~~~~~~~~~~~~~~~----~~~~i~~~~ 121 (289)
T cd00200 49 GHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVR--TLT-GHTSYVSSVAFSPDGRILSSSS----RDKTIKVWD 121 (289)
T ss_pred cCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcccceE--EEe-ccCCcEEEEEEcCCCCEEEEec----CCCeEEEEE
Confidence 5778889999999999999999 9999999999765443 333 5777899999888755555444 479999999
Q ss_pred CCCccEEeeec-cCcceeEEEEecceeEEE--e-cCeEEEEEcccceeeeeEeccCCCceeeeeecCCCccEEEecCCCC
Q 018248 83 DHENRYLGELS-FRSEVKNVRLRRDRIVVV--L-NQKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAGPMVMACPGLLK 158 (359)
Q Consensus 83 ~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~--~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d 158 (359)
+.+++....+. |...+.++.|+|++.+++ . ++.|++||+++++.+..+..+...+..+.++++++. +++ ++.+
T Consensus 122 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~--l~~-~~~~ 198 (289)
T cd00200 122 VETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEK--LLS-SSSD 198 (289)
T ss_pred CCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEccccccceeEecCccccceEEECCCcCE--EEE-ecCC
Confidence 99888888887 888999999999887777 4 999999999988888888888888899999998865 444 3349
Q ss_pred eeEEEEecCC-eeeEEeecccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcEEEEeecCCCCcceEEEEecCCCCE
Q 018248 159 GQVRVEDYGT-KKSKYITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSNAQW 237 (359)
Q Consensus 159 ~~v~~~~~~~-~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~ 237 (359)
+.+++|+... ..+..+..|...+.+++|+|++.++++++.++. |++||+.+++.+..+.. |...|.+++|+|++++
T Consensus 199 ~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~-i~i~~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~ 275 (289)
T cd00200 199 GTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGT-IRVWDLRTGECVQTLSG--HTNSVTSLAWSPDGKR 275 (289)
T ss_pred CcEEEEECCCCceecchhhcCCceEEEEEcCCCcEEEEEcCCCc-EEEEEcCCceeEEEccc--cCCcEEEEEECCCCCE
Confidence 9999988874 566666688889999999999989988888999 99999999998888875 6779999999999999
Q ss_pred EEEEcCCCcEEEEE
Q 018248 238 LAASSDKGTVHVFG 251 (359)
Q Consensus 238 l~~~~~dg~i~iw~ 251 (359)
|++++.||.+++|+
T Consensus 276 l~~~~~d~~i~iw~ 289 (289)
T cd00200 276 LASGSADGTIRIWD 289 (289)
T ss_pred EEEecCCCeEEecC
Confidence 99999999999996
No 60
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=5.4e-29 Score=201.07 Aligned_cols=275 Identities=15% Similarity=0.198 Sum_probs=218.5
Q ss_pred CCCceEEEEEccCCC-EEEEecCCceEEEEcCCCccee-eeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEE
Q 018248 5 DPITIHHLALNQDHG-CFATGTETGFRVYLSDPYKPIM-RRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWD 82 (359)
Q Consensus 5 h~~~v~~~~~s~~g~-~l~~~~d~~i~iw~~~~~~~~~-~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd 82 (359)
..+.|.+++|||... -+|+.+.-.+.||+..+..... ...| ...+..++|..++..++... ..|.|+++|
T Consensus 25 e~~~vssl~fsp~~P~d~aVt~S~rvqly~~~~~~~~k~~srF----k~~v~s~~fR~DG~LlaaGD----~sG~V~vfD 96 (487)
T KOG0310|consen 25 EHNSVSSLCFSPKHPYDFAVTSSVRVQLYSSVTRSVRKTFSRF----KDVVYSVDFRSDGRLLAAGD----ESGHVKVFD 96 (487)
T ss_pred ccCcceeEecCCCCCCceEEecccEEEEEecchhhhhhhHHhh----ccceeEEEeecCCeEEEccC----CcCcEEEec
Confidence 457899999999654 4677778889999987644332 2334 57788888887777666554 569999999
Q ss_pred CCCccEEeeec-cCcceeEEEEecceeEEE----ecCeEEEEEcccceeeeeEeccCCCceeeeeecCCCccEEEecCCC
Q 018248 83 DHENRYLGELS-FRSEVKNVRLRRDRIVVV----LNQKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAGPMVMACPGLL 157 (359)
Q Consensus 83 ~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~----~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~ 157 (359)
.++...++.+. |..++..+.|+|++..++ .|+.+++||+.+......+.+|...+.+.+++|..+. ++.+|+.
T Consensus 97 ~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~h--ivvtGsY 174 (487)
T KOG0310|consen 97 MKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDH--IVVTGSY 174 (487)
T ss_pred cccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCe--EEEecCC
Confidence 87777778887 999999999999876555 7889999999888876688999999999999998876 4445999
Q ss_pred CeeEEEEecCCe-eeEEeecccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcEEEEeecCCCCcceEEEEecCCCC
Q 018248 158 KGQVRVEDYGTK-KSKYITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSNAQ 236 (359)
Q Consensus 158 d~~v~~~~~~~~-~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~ 236 (359)
||.|++|+.+.. ....--.|..+|..+.+-|.|..+++++... |++||+-+|..+...... |...|+|+.+..++.
T Consensus 175 Dg~vrl~DtR~~~~~v~elnhg~pVe~vl~lpsgs~iasAgGn~--vkVWDl~~G~qll~~~~~-H~KtVTcL~l~s~~~ 251 (487)
T KOG0310|consen 175 DGKVRLWDTRSLTSRVVELNHGCPVESVLALPSGSLIASAGGNS--VKVWDLTTGGQLLTSMFN-HNKTVTCLRLASDST 251 (487)
T ss_pred CceEEEEEeccCCceeEEecCCCceeeEEEcCCCCEEEEcCCCe--EEEEEecCCceehhhhhc-ccceEEEEEeecCCc
Confidence 999999998875 3333346899999999999999999988664 999999866544333322 678999999999999
Q ss_pred EEEEEcCCCcEEEEEccCCCCCCCCCccccCCCCCccCCCCCceeeeeEeeeecceEEecccceeEEeecCCcEEEeeec
Q 018248 237 WLAASSDKGTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSAISSFRFIRGVLPKYFSSKWSMAQFRLPENVQYLVGFG 316 (359)
Q Consensus 237 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 316 (359)
.|++++-|+.|++||+.+-+.. . .++.| ++|.+++.+
T Consensus 252 rLlS~sLD~~VKVfd~t~~Kvv----------------------------~--------------s~~~~-~pvLsiavs 288 (487)
T KOG0310|consen 252 RLLSGSLDRHVKVFDTTNYKVV----------------------------H--------------SWKYP-GPVLSIAVS 288 (487)
T ss_pred eEeecccccceEEEEccceEEE----------------------------E--------------eeecc-cceeeEEec
Confidence 9999999999999997764411 0 12222 588999999
Q ss_pred ccCCEEEEEecCCeEEEEE
Q 018248 317 RQNNTIVIVGLDGSYYKCE 335 (359)
Q Consensus 317 ~~~~~l~~~~~dg~i~v~~ 335 (359)
||++.+++|-.||.+.+-+
T Consensus 289 ~dd~t~viGmsnGlv~~rr 307 (487)
T KOG0310|consen 289 PDDQTVVIGMSNGLVSIRR 307 (487)
T ss_pred CCCceEEEecccceeeeeh
Confidence 9999999999999887663
No 61
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.97 E-value=8.1e-29 Score=218.16 Aligned_cols=289 Identities=17% Similarity=0.218 Sum_probs=230.0
Q ss_pred CCCceEEEEEccCCCEEEEec---CCceEEEEcCCCc----------ceeeeecccCCCCceeEEEEeccCCEEEEEecC
Q 018248 5 DPITIHHLALNQDHGCFATGT---ETGFRVYLSDPYK----------PIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSG 71 (359)
Q Consensus 5 h~~~v~~~~~s~~g~~l~~~~---d~~i~iw~~~~~~----------~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~ 71 (359)
+...|.+++.+|||..+|+|+ |+.++||+.++-- ........ .|.+.+.|+.|++++.+++..+
T Consensus 12 ~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~-~h~~sv~CVR~S~dG~~lAsGS-- 88 (942)
T KOG0973|consen 12 NEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMD-DHDGSVNCVRFSPDGSYLASGS-- 88 (942)
T ss_pred CCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeec-cccCceeEEEECCCCCeEeecc--
Confidence 456799999999999999998 8889999976321 11111222 6899999999999999999888
Q ss_pred CCCCCeEEEEECCC----------c--------cEEeeec-cCcceeEEEEecceeEEE---ecCeEEEEEcccceeeee
Q 018248 72 PHQSNKVMIWDDHE----------N--------RYLGELS-FRSEVKNVRLRRDRIVVV---LNQKVYVYNFTDLKLVDQ 129 (359)
Q Consensus 72 ~~~d~~i~iwd~~~----------~--------~~~~~~~-~~~~v~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~ 129 (359)
.|+.|.||+... | +.+..+. |+..|.+++|+|++.+++ .|++|.+||..+.+.+..
T Consensus 89 --DD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~v 166 (942)
T KOG0973|consen 89 --DDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLKV 166 (942)
T ss_pred --CcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccccceeeee
Confidence 789999999662 0 2455566 999999999999999999 899999999999999999
Q ss_pred EeccCCCceeeeeecCCCccEEEecCCCCeeEEEEecCC-eeeEEeeccc------ccccEEEEccCCcEEEEEeC----
Q 018248 130 IETVVNPTGLCDVSQNAGPMVMACPGLLKGQVRVEDYGT-KKSKYITAHA------SRIASIAMTLDGRFVATASS---- 198 (359)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~v~~~~~~~-~~~~~~~~~~------~~i~~~~~s~~~~~l~~~~~---- 198 (359)
+.+|...|.-+.|.|-+++ +|+ -+.|++|++|.... ...+.+..+. .....+.|||||++|++...
T Consensus 167 l~~H~s~VKGvs~DP~Gky--~AS-qsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~ 243 (942)
T KOG0973|consen 167 LRGHQSLVKGVSWDPIGKY--FAS-QSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGG 243 (942)
T ss_pred eecccccccceEECCccCe--eee-ecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCC
Confidence 9999999999999998876 777 56799999998443 4555554442 35678999999999998742
Q ss_pred CCCeEEEEEcCCCcEEEEeecCCCCcceEEEEecCC-----CC------------EEEEEcCCCcEEEEEccCCCCCCCC
Q 018248 199 KGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSN-----AQ------------WLAASSDKGTVHVFGLKVDSGSPGT 261 (359)
Q Consensus 199 dg~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~-----~~------------~l~~~~~dg~i~iw~~~~~~~~~~~ 261 (359)
-.. +.|.+-.+.+.-..+.+ |.+++.++.|+|. .+ .+|+|+.|++|-||.....++.-
T Consensus 244 ~~~-~~IieR~tWk~~~~LvG--H~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~-- 318 (942)
T KOG0973|consen 244 KST-IAIIERGTWKVDKDLVG--HSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLF-- 318 (942)
T ss_pred cce-eEEEecCCceeeeeeec--CCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchh--
Confidence 234 88888877777778877 7789999999982 11 67899999999999997766431
Q ss_pred CccccCCCCCccCCCCCceeeeeEeeeecceEEecccceeEEeecCCcEEEeeecccCCEEEEEecCCeEEEEEeCCCCC
Q 018248 262 SKLHSASEPNLSSKNSSAISSFRFIRGVLPKYFSSKWSMAQFRLPENVQYLVGFGRQNNTIVIVGLDGSYYKCEFDPMKG 341 (359)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~ 341 (359)
. ...+-...|..++|+|||-.|++++.||+|.++.++...=
T Consensus 319 ----------------------------v-----------i~~lf~~SI~DmsWspdG~~LfacS~DGtV~~i~Fee~El 359 (942)
T KOG0973|consen 319 ----------------------------V-----------IHNLFNKSIVDMSWSPDGFSLFACSLDGTVALIHFEEKEL 359 (942)
T ss_pred ----------------------------h-----------hhhhhcCceeeeeEcCCCCeEEEEecCCeEEEEEcchHHh
Confidence 0 0122335789999999999999999999999999987654
Q ss_pred CceE
Q 018248 342 GEMH 345 (359)
Q Consensus 342 ~~~~ 345 (359)
|+..
T Consensus 360 G~~l 363 (942)
T KOG0973|consen 360 GVAL 363 (942)
T ss_pred Cccc
Confidence 5443
No 62
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.97 E-value=4.7e-30 Score=197.56 Aligned_cols=280 Identities=12% Similarity=0.176 Sum_probs=227.2
Q ss_pred CCCceEEEEEccCCCEEEEec-CCceEEEEcCCCcceeeeecc-----cCCCCceeEEEEeccCCEEEEEecCCCCCCeE
Q 018248 5 DPITIHHLALNQDHGCFATGT-ETGFRVYLSDPYKPIMRRDFD-----RNPRGGTQLVSMLFRSNIICLVNSGPHQSNKV 78 (359)
Q Consensus 5 h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~-----~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i 78 (359)
.++.+.|..|||||++|++|+ ||-|.+|+..+++......++ --|..+|.+++|+-+...++..+ .||+|
T Consensus 212 ~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGs----qDGkI 287 (508)
T KOG0275|consen 212 QKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGS----QDGKI 287 (508)
T ss_pred cccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccC----cCCcE
Confidence 356688999999999999999 999999999887654222111 03577888888887777766655 79999
Q ss_pred EEEECCCccEEeeec--cCcceeEEEEecceeEEE---ecCeEEEEEcccceeeeeEeccCCCceeeeeecCCCccEEEe
Q 018248 79 MIWDDHENRYLGELS--FRSEVKNVRLRRDRIVVV---LNQKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAGPMVMAC 153 (359)
Q Consensus 79 ~iwd~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 153 (359)
++|.+.+|++++.+. |...|+++.|+.|+..+. .|.++++.-+++|++++.+.+|..-++-..|.+++.. +++
T Consensus 288 KvWri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~--iis 365 (508)
T KOG0275|consen 288 KVWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHH--IIS 365 (508)
T ss_pred EEEEEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCccccccceEEcCCCCe--EEE
Confidence 999999999999997 999999999999987766 8999999999999999999999999999999999987 443
Q ss_pred cCCCCeeEEEEecCC-eeeEEeec--ccccccEEEEccC-CcEEEEEeCCCCeEEEEEcCCCcEEEEeecCC-CCcceEE
Q 018248 154 PGLLKGQVRVEDYGT-KKSKYITA--HASRIASIAMTLD-GRFVATASSKGTLIRVFNTMDGSLLQEMRRGA-ERAEIYS 228 (359)
Q Consensus 154 ~g~~d~~v~~~~~~~-~~~~~~~~--~~~~i~~~~~s~~-~~~l~~~~~dg~~i~iwd~~~~~~~~~~~~~~-~~~~i~~ 228 (359)
++.||+|++|.... .++.+++. ...+|+++-.-|. ...++++....+ |+|.++ .|+.++.+..+. ..+...+
T Consensus 366 -aSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsnt-v~imn~-qGQvVrsfsSGkREgGdFi~ 442 (508)
T KOG0275|consen 366 -ASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNT-VYIMNM-QGQVVRSFSSGKREGGDFIN 442 (508)
T ss_pred -ecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCe-EEEEec-cceEEeeeccCCccCCceEE
Confidence 44799999988754 55666543 4557888877774 457888888888 999997 688888887543 2346678
Q ss_pred EEecCCCCEEEEEcCCCcEEEEEccCCCCCCCCCccccCCCCCccCCCCCceeeeeEeeeecceEEecccceeEEeecCC
Q 018248 229 LAFSSNAQWLAASSDKGTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSAISSFRFIRGVLPKYFSSKWSMAQFRLPEN 308 (359)
Q Consensus 229 ~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (359)
...||.|.++.+.++|+.++.|.+.+++-. + ++..++.
T Consensus 443 ~~lSpkGewiYcigED~vlYCF~~~sG~LE---------------------------------~---------tl~VhEk 480 (508)
T KOG0275|consen 443 AILSPKGEWIYCIGEDGVLYCFSVLSGKLE---------------------------------R---------TLPVHEK 480 (508)
T ss_pred EEecCCCcEEEEEccCcEEEEEEeecCcee---------------------------------e---------eeecccc
Confidence 889999999999999999999999998722 1 1333455
Q ss_pred cEEEeeecccCCEEEEEecCCeEEEEE
Q 018248 309 VQYLVGFGRQNNTIVIVGLDGSYYKCE 335 (359)
Q Consensus 309 ~v~~~~~s~~~~~l~~~~~dg~i~v~~ 335 (359)
.+..++-+|..+.|++-++||.+++|.
T Consensus 481 dvIGl~HHPHqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 481 DVIGLTHHPHQNLLASYSEDGLLKLWK 507 (508)
T ss_pred cccccccCcccchhhhhcccchhhhcC
Confidence 567788899999999999999999994
No 63
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.97 E-value=1.8e-30 Score=209.28 Aligned_cols=236 Identities=11% Similarity=0.184 Sum_probs=197.2
Q ss_pred CCCCCceEEEEEccCCCEEEEec-CCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEE
Q 018248 3 QPDPITIHHLALNQDHGCFATGT-ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIW 81 (359)
Q Consensus 3 ~~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iw 81 (359)
+.|..+|..++|+++|..|.+++ |+.+++||+++++....... ...+.++.+.|++..++++++ .|+.|+.|
T Consensus 255 ~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~f~~----~~~~~cvkf~pd~~n~fl~G~---sd~ki~~w 327 (503)
T KOG0282|consen 255 KGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTETGQVLSRFHL----DKVPTCVKFHPDNQNIFLVGG---SDKKIRQW 327 (503)
T ss_pred hcchhhhhhhhccccCCeeeeeecceeeeeeccccceEEEEEec----CCCceeeecCCCCCcEEEEec---CCCcEEEE
Confidence 46899999999999999999999 99999999999988866554 567788999999967777766 58999999
Q ss_pred ECCCccEEeeec-cCcceeEEEEecceeEEE---ecCeEEEEEcccceeeeeEe-ccCCCceeeeeecCCCccEEEecCC
Q 018248 82 DDHENRYLGELS-FRSEVKNVRLRRDRIVVV---LNQKVYVYNFTDLKLVDQIE-TVVNPTGLCDVSQNAGPMVMACPGL 156 (359)
Q Consensus 82 d~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~g~ 156 (359)
|+++++.++++. |-+.|..+.|-+++..++ .|+.++||+.+.+-.++.+. .......++..+|+++. +++ -+
T Consensus 328 DiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~--~~a-Qs 404 (503)
T KOG0282|consen 328 DIRSGKVVQEYDRHLGAILDITFVDEGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKW--FAA-QS 404 (503)
T ss_pred eccchHHHHHHHhhhhheeeeEEccCCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCe--ehh-hc
Confidence 999999999998 889999999999998777 89999999998776655442 23344567788888764 555 56
Q ss_pred CCeeEEEEecCC----eeeEEeeccc--ccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcEEEEeecCCCCcceEEEE
Q 018248 157 LKGQVRVEDYGT----KKSKYITAHA--SRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLA 230 (359)
Q Consensus 157 ~d~~v~~~~~~~----~~~~~~~~~~--~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~ 230 (359)
.|+.+.++.... ...+.+.+|. +.-..+.|||||.+|++|+.||. +.+||.++.+.+..++. |...+..+.
T Consensus 405 ~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~-v~~wdwkt~kl~~~lka--h~~~ci~v~ 481 (503)
T KOG0282|consen 405 MDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGK-VNFWDWKTTKLVSKLKA--HDQPCIGVD 481 (503)
T ss_pred cCceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCcc-EEEeechhhhhhhcccc--CCcceEEEE
Confidence 788888865432 3445567774 45677899999999999999999 99999999999999987 778999999
Q ss_pred ecCCC-CEEEEEcCCCcEEEEE
Q 018248 231 FSSNA-QWLAASSDKGTVHVFG 251 (359)
Q Consensus 231 ~s~~~-~~l~~~~~dg~i~iw~ 251 (359)
|+|.. ..+|+++.||.|++|+
T Consensus 482 wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 482 WHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred ecCCCcceeEecccCceeEecC
Confidence 99954 5799999999999996
No 64
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=2.2e-28 Score=204.61 Aligned_cols=277 Identities=13% Similarity=0.103 Sum_probs=227.7
Q ss_pred EEEEccCCCEEEEecCCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEECCCccEEe
Q 018248 11 HLALNQDHGCFATGTETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDDHENRYLG 90 (359)
Q Consensus 11 ~~~~s~~g~~l~~~~d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~ 90 (359)
-+.|+ ....||+|....|++|+..++.......+ +...+..+.|++++..+++.. .+|.|.|||..+.+.+.
T Consensus 182 lldWs-s~n~laValg~~vylW~~~s~~v~~l~~~---~~~~vtSv~ws~~G~~LavG~----~~g~v~iwD~~~~k~~~ 253 (484)
T KOG0305|consen 182 LLDWS-SANVLAVALGQSVYLWSASSGSVTELCSF---GEELVTSVKWSPDGSHLAVGT----SDGTVQIWDVKEQKKTR 253 (484)
T ss_pred Hhhcc-cCCeEEEEecceEEEEecCCCceEEeEec---CCCceEEEEECCCCCEEEEee----cCCeEEEEehhhccccc
Confidence 35677 55688888888999999998876655565 278999999999999999888 78999999999988888
Q ss_pred eec--cCcceeEEEEecceeEEE-ecCeEEEEEcccceeeee-EeccCCCceeeeeecCCCccEEEecCCCCeeEEEEec
Q 018248 91 ELS--FRSEVKNVRLRRDRIVVV-LNQKVYVYNFTDLKLVDQ-IETVVNPTGLCDVSQNAGPMVMACPGLLKGQVRVEDY 166 (359)
Q Consensus 91 ~~~--~~~~v~~~~~~~~~~~~~-~d~~i~i~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~v~~~~~ 166 (359)
.+. |...|-+++|+....... .++.|..+|++..+.... +..|...|..+.|++++.. +|+ |+.|+.+.||+.
T Consensus 254 ~~~~~h~~rvg~laW~~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~--lAS-GgnDN~~~Iwd~ 330 (484)
T KOG0305|consen 254 TLRGSHASRVGSLAWNSSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQ--LAS-GGNDNVVFIWDG 330 (484)
T ss_pred cccCCcCceeEEEeccCceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCe--ecc-CCCccceEeccC
Confidence 887 689999999994433333 999999999987765554 7788888888999998876 887 778999999887
Q ss_pred -CCeeeEEeecccccccEEEEcc-CCcEEEEEe--CCCCeEEEEEcCCCcEEEEeecCCCCcceEEEEecCCCCEEEEE-
Q 018248 167 -GTKKSKYITAHASRIASIAMTL-DGRFVATAS--SKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSNAQWLAAS- 241 (359)
Q Consensus 167 -~~~~~~~~~~~~~~i~~~~~s~-~~~~l~~~~--~dg~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~- 241 (359)
...+...+..|...|..++|+| ...+||+|+ .|+. |++||..+++.+..+.. .+.|.++.|++..+-|+++
T Consensus 331 ~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~-i~fwn~~~g~~i~~vdt---gsQVcsL~Wsk~~kEi~sth 406 (484)
T KOG0305|consen 331 LSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRC-IKFWNTNTGARIDSVDT---GSQVCSLIWSKKYKELLSTH 406 (484)
T ss_pred CCccccEEEeccceeeeEeeeCCCccCceEEcCCCcccE-EEEEEcCCCcEeccccc---CCceeeEEEcCCCCEEEEec
Confidence 4477888999999999999999 455888875 6888 99999999999998874 4689999999988766654
Q ss_pred -cCCCcEEEEEccCCCCCCCCCccccCCCCCccCCCCCceeeeeEeeeecceEEecccceeEEeecCCcEEEeeecccCC
Q 018248 242 -SDKGTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSAISSFRFIRGVLPKYFSSKWSMAQFRLPENVQYLVGFGRQNN 320 (359)
Q Consensus 242 -~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 320 (359)
..++.|.||+..+.... +.+..|...|..++++|||.
T Consensus 407 G~s~n~i~lw~~ps~~~~------------------------------------------~~l~gH~~RVl~la~SPdg~ 444 (484)
T KOG0305|consen 407 GYSENQITLWKYPSMKLV------------------------------------------AELLGHTSRVLYLALSPDGE 444 (484)
T ss_pred CCCCCcEEEEecccccee------------------------------------------eeecCCcceeEEEEECCCCC
Confidence 35678999999885522 12445677889999999999
Q ss_pred EEEEEecCCeEEEEEeCCCCCCce
Q 018248 321 TIVIVGLDGSYYKCEFDPMKGGEM 344 (359)
Q Consensus 321 ~l~~~~~dg~i~v~~~~~~~~~~~ 344 (359)
.|++|+.|.++++|++-.....++
T Consensus 445 ~i~t~a~DETlrfw~~f~~~~~~~ 468 (484)
T KOG0305|consen 445 TIVTGAADETLRFWNLFDERPKST 468 (484)
T ss_pred EEEEecccCcEEeccccCCCCccc
Confidence 999999999999999977543333
No 65
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.97 E-value=6.4e-28 Score=224.77 Aligned_cols=235 Identities=10% Similarity=0.182 Sum_probs=191.5
Q ss_pred CCceEEEEEcc-CCCEEEEec-CCceEEEEcCCCcceeeeecccCCCCceeEEEEec-cCCEEEEEecCCCCCCeEEEEE
Q 018248 6 PITIHHLALNQ-DHGCFATGT-ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLF-RSNIICLVNSGPHQSNKVMIWD 82 (359)
Q Consensus 6 ~~~v~~~~~s~-~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~~~~~~~~~~~d~~i~iwd 82 (359)
...|.+++|+| ++.+|++++ |+.|++||+.+++.. ..+. +|...|..++|++ +++.++.++ .|+.|++||
T Consensus 532 ~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~--~~~~-~H~~~V~~l~~~p~~~~~L~Sgs----~Dg~v~iWd 604 (793)
T PLN00181 532 RSKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQLV--TEMK-EHEKRVWSIDYSSADPTLLASGS----DDGSVKLWS 604 (793)
T ss_pred cCceeeEEeccCCCCEEEEEeCCCeEEEEECCCCeEE--EEec-CCCCCEEEEEEcCCCCCEEEEEc----CCCEEEEEE
Confidence 46789999987 478899999 999999999876544 4444 8999999999986 556666666 689999999
Q ss_pred CCCccEEeeeccCcceeEEEEec-ceeEEE---ecCeEEEEEcccce-eeeeEeccCCCceeeeeecCCCccEEEecCCC
Q 018248 83 DHENRYLGELSFRSEVKNVRLRR-DRIVVV---LNQKVYVYNFTDLK-LVDQIETVVNPTGLCDVSQNAGPMVMACPGLL 157 (359)
Q Consensus 83 ~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~---~d~~i~i~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~ 157 (359)
+.+++.+..+.+...+.++.|++ ++..++ .|+.|++||+++.+ .+..+..|...+..+.|. ++. .+++ ++.
T Consensus 605 ~~~~~~~~~~~~~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~--~lvs-~s~ 680 (793)
T PLN00181 605 INQGVSIGTIKTKANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSS--TLVS-SST 680 (793)
T ss_pred CCCCcEEEEEecCCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCC--EEEE-EEC
Confidence 99999988888667899999964 577666 89999999997765 466777888888888886 343 3555 567
Q ss_pred CeeEEEEecCC-------eeeEEeecccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcEEEEeec-----------
Q 018248 158 KGQVRVEDYGT-------KKSKYITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRR----------- 219 (359)
Q Consensus 158 d~~v~~~~~~~-------~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~~~~~~~----------- 219 (359)
|+.|++|+... ..+..+.+|...+.+++|+|++.+|++|+.|+. |++|+......+..+..
T Consensus 681 D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~-v~iw~~~~~~~~~s~~~~~~~~~~~~~~ 759 (793)
T PLN00181 681 DNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNE-VFVYHKAFPMPVLSYKFKTIDPVSGLEV 759 (793)
T ss_pred CCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCE-EEEEECCCCCceEEEecccCCccccccc
Confidence 99999998762 467788899999999999999999999999999 99999876654433211
Q ss_pred CCCCcceEEEEecCCCCEEEEEcCCCcEEEEEc
Q 018248 220 GAERAEIYSLAFSSNAQWLAASSDKGTVHVFGL 252 (359)
Q Consensus 220 ~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~ 252 (359)
..+...|.+++|+|++..|++|+.||.|+||++
T Consensus 760 ~~~~~~V~~v~ws~~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 760 DDASQFISSVCWRGQSSTLVAANSTGNIKILEM 792 (793)
T ss_pred CCCCcEEEEEEEcCCCCeEEEecCCCcEEEEec
Confidence 123457999999999999999999999999986
No 66
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.97 E-value=3.1e-28 Score=211.07 Aligned_cols=272 Identities=17% Similarity=0.227 Sum_probs=223.5
Q ss_pred CCCceEEEEEccCCCEEEEec-CCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEEC
Q 018248 5 DPITIHHLALNQDHGCFATGT-ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDD 83 (359)
Q Consensus 5 h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~ 83 (359)
+...+.+..|. ..++++++ ++.|++|+..++.... ..+. ||.+.|..+++...++.++.++ .|.++++||.
T Consensus 207 ~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~i~-~~l~-GH~g~V~~l~~~~~~~~lvsgS----~D~t~rvWd~ 278 (537)
T KOG0274|consen 207 DDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYLIL-TRLV-GHFGGVWGLAFPSGGDKLVSGS----TDKTERVWDC 278 (537)
T ss_pred Ccchhhhheee--cCeEEecCCCceeEEeecccceEEE-eecc-CCCCCceeEEEecCCCEEEEEe----cCCcEEeEec
Confidence 56778888888 55778888 9999999999765553 3355 9999999999987566666666 6899999999
Q ss_pred CCccEEeeec-cCcceeEEEEecceeEEE-ecCeEEEEEcccceeeeeEeccCCCceeeeeecCCCccEEEecCCCCeeE
Q 018248 84 HENRYLGELS-FRSEVKNVRLRRDRIVVV-LNQKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAGPMVMACPGLLKGQV 161 (359)
Q Consensus 84 ~~~~~~~~~~-~~~~v~~~~~~~~~~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~v 161 (359)
.+|++...+. |...|.++...+.-..-. .|.+|++|++.+++.+..+.+|..+|.++.+. ++ ++++ |+.|+.|
T Consensus 279 ~sg~C~~~l~gh~stv~~~~~~~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~--~~--~lvs-gs~d~~v 353 (537)
T KOG0274|consen 279 STGECTHSLQGHTSSVRCLTIDPFLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD--EP--LLVS-GSYDGTV 353 (537)
T ss_pred CCCcEEEEecCCCceEEEEEccCceEeeccCCceEEEEeccCcceEEEeccccccEEEEEec--CC--EEEE-EecCceE
Confidence 9999999999 999999998876554444 89999999999999999999899999888876 33 3554 7889999
Q ss_pred EEEecC-CeeeEEeecccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCC-cEEEEeecCCCCcceEEEEecCCCCEEE
Q 018248 162 RVEDYG-TKKSKYITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDG-SLLQEMRRGAERAEIYSLAFSSNAQWLA 239 (359)
Q Consensus 162 ~~~~~~-~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~-~~~~~~~~~~~~~~i~~~~~s~~~~~l~ 239 (359)
++|+.. +++++.+.+|...|.++.+.+. ..+++|+.|+. |++||+++. +++..+.. |..-+.++.+ .+++|+
T Consensus 354 ~VW~~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~-IkvWdl~~~~~c~~tl~~--h~~~v~~l~~--~~~~Lv 427 (537)
T KOG0274|consen 354 KVWDPRTGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSLDTT-IKVWDLRTKRKCIHTLQG--HTSLVSSLLL--RDNFLV 427 (537)
T ss_pred EEEEhhhceeeeeecCCcceEEEEEecCc-ceEEeeeeccc-eEeecCCchhhhhhhhcC--Cccccccccc--ccceeE
Confidence 998875 5888999999999999988665 88999999999 999999999 89999987 6667766655 678999
Q ss_pred EEcCCCcEEEEEccCCCCCCCCCccccCCCCCccCCCCCceeeeeEeeeecceEEecccceeEEee-cCCcEEEeeeccc
Q 018248 240 ASSDKGTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSAISSFRFIRGVLPKYFSSKWSMAQFRL-PENVQYLVGFGRQ 318 (359)
Q Consensus 240 ~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~s~~ 318 (359)
+++.|++|++||.++++... . +.. +.+.+..+++.
T Consensus 428 s~~aD~~Ik~WD~~~~~~~~---------------------------------~---------~~~~~~~~v~~l~~~-- 463 (537)
T KOG0274|consen 428 SSSADGTIKLWDAEEGECLR---------------------------------T---------LEGRHVGGVSALALG-- 463 (537)
T ss_pred eccccccEEEeecccCceee---------------------------------e---------eccCCcccEEEeecC--
Confidence 99999999999999987431 0 111 23456666665
Q ss_pred CCEEEEEecCCeEEEEEeCCC
Q 018248 319 NNTIVIVGLDGSYYKCEFDPM 339 (359)
Q Consensus 319 ~~~l~~~~~dg~i~v~~~~~~ 339 (359)
...+++++.||.+++|+++..
T Consensus 464 ~~~il~s~~~~~~~l~dl~~~ 484 (537)
T KOG0274|consen 464 KEEILCSSDDGSVKLWDLRSG 484 (537)
T ss_pred cceEEEEecCCeeEEEecccC
Confidence 468999999999999998873
No 67
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1.8e-28 Score=205.01 Aligned_cols=240 Identities=12% Similarity=0.118 Sum_probs=202.0
Q ss_pred CCceEEEEEccCCCEEEEec-CCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEECC
Q 018248 6 PITIHHLALNQDHGCFATGT-ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDDH 84 (359)
Q Consensus 6 ~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~~ 84 (359)
...|+++.|+++|.+||+|. +|.|.|||....+.. ..+..+|...|.+++|. ...+...+ .++.|..+|+.
T Consensus 217 ~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~--~~~~~~h~~rvg~laW~--~~~lssGs----r~~~I~~~dvR 288 (484)
T KOG0305|consen 217 EELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKT--RTLRGSHASRVGSLAWN--SSVLSSGS----RDGKILNHDVR 288 (484)
T ss_pred CCceEEEEECCCCCEEEEeecCCeEEEEehhhcccc--ccccCCcCceeEEEecc--CceEEEec----CCCcEEEEEEe
Confidence 68899999999999999999 999999999876555 44441388888888875 33333333 68999999998
Q ss_pred CccEEee-ec-cCcceeEEEEecceeEEE---ecCeEEEEEcccceeeeeEeccCCCceeeeeecCCCccEEEecCCCCe
Q 018248 85 ENRYLGE-LS-FRSEVKNVRLRRDRIVVV---LNQKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAGPMVMACPGLLKG 159 (359)
Q Consensus 85 ~~~~~~~-~~-~~~~v~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~ 159 (359)
..+.... +. |..+|..+.|++++.+++ .|+.+.|||....++...+..|...|..++|+|...+++....|+.|+
T Consensus 289 ~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~ 368 (484)
T KOG0305|consen 289 ISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADR 368 (484)
T ss_pred cchhhhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCCCccc
Confidence 8776655 55 999999999999999999 899999999988889999999999999999999988866555677899
Q ss_pred eEEEEecCCeeeEEeecccccccEEEEccCCcEEEEE--eCCCCeEEEEEcCCCcEEEEeecCCCCcceEEEEecCCCCE
Q 018248 160 QVRVEDYGTKKSKYITAHASRIASIAMTLDGRFVATA--SSKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSNAQW 237 (359)
Q Consensus 160 ~v~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~--~~dg~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~ 237 (359)
.|++|+...........-...|.++.|++..+.|+++ ..++. |.||+..+.+.+..+.+ |...|..+++||||..
T Consensus 369 ~i~fwn~~~g~~i~~vdtgsQVcsL~Wsk~~kEi~sthG~s~n~-i~lw~~ps~~~~~~l~g--H~~RVl~la~SPdg~~ 445 (484)
T KOG0305|consen 369 CIKFWNTNTGARIDSVDTGSQVCSLIWSKKYKELLSTHGYSENQ-ITLWKYPSMKLVAELLG--HTSRVLYLALSPDGET 445 (484)
T ss_pred EEEEEEcCCCcEecccccCCceeeEEEcCCCCEEEEecCCCCCc-EEEEeccccceeeeecC--CcceeEEEEECCCCCE
Confidence 9999888765444444457899999999998766664 34666 99999999999999987 7789999999999999
Q ss_pred EEEEcCCCcEEEEEccCCC
Q 018248 238 LAASSDKGTVHVFGLKVDS 256 (359)
Q Consensus 238 l~~~~~dg~i~iw~~~~~~ 256 (359)
+++|+.|.++++|++-...
T Consensus 446 i~t~a~DETlrfw~~f~~~ 464 (484)
T KOG0305|consen 446 IVTGAADETLRFWNLFDER 464 (484)
T ss_pred EEEecccCcEEeccccCCC
Confidence 9999999999999997753
No 68
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.97 E-value=8.5e-28 Score=192.86 Aligned_cols=286 Identities=14% Similarity=0.128 Sum_probs=225.3
Q ss_pred CCCCceEEEEEccCCCEEEEec-CCceEEEEcCCCcce---eee-----------ecc-cCCCCceeEEEEeccCCEEEE
Q 018248 4 PDPITIHHLALNQDHGCFATGT-ETGFRVYLSDPYKPI---MRR-----------DFD-RNPRGGTQLVSMLFRSNIICL 67 (359)
Q Consensus 4 ~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~---~~~-----------~~~-~~h~~~v~~~~~~~~~~~~~~ 67 (359)
.|.-+|.+|+++||+++..+++ +++|.-|++.++... ... ... .+|...+.++++++++.++++
T Consensus 140 ~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgkylat 219 (479)
T KOG0299|consen 140 KHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGKYLAT 219 (479)
T ss_pred cccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCcEEEe
Confidence 6889999999999999999999 999999998776532 111 111 178888999999999999988
Q ss_pred EecCCCCCCeEEEEECCCccEEeeec-cCcceeEEEEecce--eEEE-ecCeEEEEEcccceeeeeEeccCCCceeeeee
Q 018248 68 VNSGPHQSNKVMIWDDHENRYLGELS-FRSEVKNVRLRRDR--IVVV-LNQKVYVYNFTDLKLVDQIETVVNPTGLCDVS 143 (359)
Q Consensus 68 ~~~~~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~--~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~ 143 (359)
.+ .|..|.||+..+.+.++.++ |.+.|.+++|-... .+.+ .|..|++|++.....+.++.+|...+..+...
T Consensus 220 gg----~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~IdaL 295 (479)
T KOG0299|consen 220 GG----RDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETLYGHQDGVLGIDAL 295 (479)
T ss_pred cC----CCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHHhCCccceeeechh
Confidence 77 78999999999999999988 99999999997643 3334 99999999999888888998888876655443
Q ss_pred cCCCccEEEecCCCCeeEEEEecCCeeeEEeecccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcEEEEeecCC--
Q 018248 144 QNAGPMVMACPGLLKGQVRVEDYGTKKSKYITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRRGA-- 221 (359)
Q Consensus 144 ~~~~~~~l~~~g~~d~~v~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~~~~~~~~~-- 221 (359)
.... +++.|..|+++++|.........+.++.+.+.|++|-.+ ..+++|+.+|. |.+|++...+++......+
T Consensus 296 --~reR-~vtVGgrDrT~rlwKi~eesqlifrg~~~sidcv~~In~-~HfvsGSdnG~-IaLWs~~KKkplf~~~~AHgv 370 (479)
T KOG0299|consen 296 --SRER-CVTVGGRDRTVRLWKIPEESQLIFRGGEGSIDCVAFIND-EHFVSGSDNGS-IALWSLLKKKPLFTSRLAHGV 370 (479)
T ss_pred --cccc-eEEeccccceeEEEeccccceeeeeCCCCCeeeEEEecc-cceeeccCCce-EEEeeecccCceeEeeccccc
Confidence 3333 444587899999999987777788999999999999654 56789999999 9999999998887765321
Q ss_pred --------CCcceEEEEecCCCCEEEEEcCCCcEEEEEccCCCCCCCCCccccCCCCCccCCCCCceeeeeEeeeecceE
Q 018248 222 --------ERAEIYSLAFSSNAQWLAASSDKGTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSAISSFRFIRGVLPKY 293 (359)
Q Consensus 222 --------~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (359)
++..|++++..|...++++|+.+|.|++|.+..+-.. +.+
T Consensus 371 ~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~------------------------i~~-------- 418 (479)
T KOG0299|consen 371 IPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRA------------------------INL-------- 418 (479)
T ss_pred cCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccc------------------------cce--------
Confidence 1227899999999999999999999999999987421 000
Q ss_pred EecccceeEEeecCCcEEEeeecccCCEEEEEec-CCeEEEEEeC
Q 018248 294 FSSKWSMAQFRLPENVQYLVGFGRQNNTIVIVGL-DGSYYKCEFD 337 (359)
Q Consensus 294 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-dg~i~v~~~~ 337 (359)
+..+. -.+.|+.++|+++|+.|++|.. +..+--|-..
T Consensus 419 ------l~~ls-~~GfVNsl~f~~sgk~ivagiGkEhRlGRW~~~ 456 (479)
T KOG0299|consen 419 ------LYSLS-LVGFVNSLAFSNSGKRIVAGIGKEHRLGRWWCL 456 (479)
T ss_pred ------eeecc-cccEEEEEEEccCCCEEEEecccccccceeeEe
Confidence 01111 1368999999999997666654 5555555543
No 69
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.97 E-value=2.9e-28 Score=204.79 Aligned_cols=274 Identities=15% Similarity=0.237 Sum_probs=223.7
Q ss_pred CCCCceEEEEEccCCCEEEEec-CCceEEEEcCCCcceeeeecccCCCCceeE-EEEeccCCEEEEEecCCCCCCeEEEE
Q 018248 4 PDPITIHHLALNQDHGCFATGT-ETGFRVYLSDPYKPIMRRDFDRNPRGGTQL-VSMLFRSNIICLVNSGPHQSNKVMIW 81 (359)
Q Consensus 4 ~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~-~~~~~~~~~~~~~~~~~~~d~~i~iw 81 (359)
.|+..|..+++.+.. .+++++ |+++++|+-...+......+. +|.+-+.. +++....+...++++ .|..|.+|
T Consensus 12 gH~~DVr~v~~~~~~-~i~s~sRd~t~~vw~~~~~~~l~~~~~~-~~~g~i~~~i~y~e~~~~~l~~g~---~D~~i~v~ 86 (745)
T KOG0301|consen 12 GHKSDVRAVAVTDGV-CIISGSRDGTVKVWAKKGKQYLETHAFE-GPKGFIANSICYAESDKGRLVVGG---MDTTIIVF 86 (745)
T ss_pred cCccchheeEecCCe-EEeecCCCCceeeeeccCcccccceecc-cCcceeeccceeccccCcceEeec---ccceEEEE
Confidence 588888888877655 677777 999999998765555444554 56666665 666654555444443 78999999
Q ss_pred ECCCccEEeeec-cCcceeEEEEecceeEEE--ecCeEEEEEcccceeeeeEeccCCCceeeeeecCCCccEEEecCCCC
Q 018248 82 DDHENRYLGELS-FRSEVKNVRLRRDRIVVV--LNQKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAGPMVMACPGLLK 158 (359)
Q Consensus 82 d~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~--~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d 158 (359)
...+..++..++ |+..|.+++...++.++. .|.++++|-+ +++...+++|...|+.++.-|.+. +++ |+.|
T Consensus 87 ~~~~~~P~~~LkgH~snVC~ls~~~~~~~iSgSWD~TakvW~~--~~l~~~l~gH~asVWAv~~l~e~~---~vT-gsaD 160 (745)
T KOG0301|consen 87 KLSQAEPLYTLKGHKSNVCSLSIGEDGTLISGSWDSTAKVWRI--GELVYSLQGHTASVWAVASLPENT---YVT-GSAD 160 (745)
T ss_pred ecCCCCchhhhhccccceeeeecCCcCceEecccccceEEecc--hhhhcccCCcchheeeeeecCCCc---EEe-ccCc
Confidence 999999999998 999999999988888666 9999999985 566667899999999888777662 444 7889
Q ss_pred eeEEEEecCCeeeEEeecccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcEEEEeecCCCCcceEEEEecCCCCEE
Q 018248 159 GQVRVEDYGTKKSKYITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSNAQWL 238 (359)
Q Consensus 159 ~~v~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l 238 (359)
.+|++|.- +..++++.+|...|+.+++-+++. +++++.||. |++|++ +|+.+.++.+ |...|++++..++++.+
T Consensus 161 KtIklWk~-~~~l~tf~gHtD~VRgL~vl~~~~-flScsNDg~-Ir~w~~-~ge~l~~~~g--htn~vYsis~~~~~~~I 234 (745)
T KOG0301|consen 161 KTIKLWKG-GTLLKTFSGHTDCVRGLAVLDDSH-FLSCSNDGS-IRLWDL-DGEVLLEMHG--HTNFVYSISMALSDGLI 234 (745)
T ss_pred ceeeeccC-CchhhhhccchhheeeeEEecCCC-eEeecCCce-EEEEec-cCceeeeeec--cceEEEEEEecCCCCeE
Confidence 99999987 788999999999999999988765 569999999 999998 8999999987 88999999988889999
Q ss_pred EEEcCCCcEEEEEccCCCCCCCCCccccCCCCCccCCCCCceeeeeEeeeecceEEecccceeEEeecCCcEEEeeeccc
Q 018248 239 AASSDKGTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSAISSFRFIRGVLPKYFSSKWSMAQFRLPENVQYLVGFGRQ 318 (359)
Q Consensus 239 ~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~ 318 (359)
+++++|++++||+...-. ..+++|.-.++++.+-++
T Consensus 235 vs~gEDrtlriW~~~e~~--------------------------------------------q~I~lPttsiWsa~~L~N 270 (745)
T KOG0301|consen 235 VSTGEDRTLRIWKKDECV--------------------------------------------QVITLPTTSIWSAKVLLN 270 (745)
T ss_pred EEecCCceEEEeecCceE--------------------------------------------EEEecCccceEEEEEeeC
Confidence 999999999999988322 125667778888888877
Q ss_pred CCEEEEEecCCeEEEEEeCCC
Q 018248 319 NNTIVIVGLDGSYYKCEFDPM 339 (359)
Q Consensus 319 ~~~l~~~~~dg~i~v~~~~~~ 339 (359)
|. |++|++||.||||..+..
T Consensus 271 gD-Ivvg~SDG~VrVfT~~k~ 290 (745)
T KOG0301|consen 271 GD-IVVGGSDGRVRVFTVDKD 290 (745)
T ss_pred CC-EEEeccCceEEEEEeccc
Confidence 54 677999999999998854
No 70
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.97 E-value=1.5e-27 Score=190.23 Aligned_cols=279 Identities=11% Similarity=0.182 Sum_probs=225.3
Q ss_pred CCceEEEEEccCCCEEEEec-CCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEECC
Q 018248 6 PITIHHLALNQDHGCFATGT-ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDDH 84 (359)
Q Consensus 6 ~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~~ 84 (359)
...|.++...|....+++|+ |..+.++|....+.. ..+. ||...+..+.++++...++..+ .|..|++|...
T Consensus 219 ~pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l--~~~~-Gh~kki~~v~~~~~~~~v~~aS----ad~~i~vws~~ 291 (506)
T KOG0289|consen 219 TPGITALDIIPSSSKILTGGEDKTAVLFDKPSNQIL--ATLK-GHTKKITSVKFHKDLDTVITAS----ADEIIRVWSVP 291 (506)
T ss_pred CCCeeEEeecCCCCcceecCCCCceEEEecchhhhh--hhcc-CcceEEEEEEeccchhheeecC----CcceEEeeccc
Confidence 46788898888878899999 999999999876555 4555 9999999888888877777777 78999999987
Q ss_pred CccEEeeec-cCcceeEEEEecceeEEE---ecCeEEEEEcccceeeeeEeccCC--CceeeeeecCCCccEEEecCCCC
Q 018248 85 ENRYLGELS-FRSEVKNVRLRRDRIVVV---LNQKVYVYNFTDLKLVDQIETVVN--PTGLCDVSQNAGPMVMACPGLLK 158 (359)
Q Consensus 85 ~~~~~~~~~-~~~~v~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~g~~d 158 (359)
......... |+.+|+.+..+|.|.+++ .|++....|++++..+........ .+.+.+|+||+ +++++ |..|
T Consensus 292 ~~s~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDg--Lifgt-gt~d 368 (506)
T KOG0289|consen 292 LSSEPTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDG--LIFGT-GTPD 368 (506)
T ss_pred cccCccccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCc--eEEec-cCCC
Confidence 776666666 999999999999999988 899999999999988877765333 35667777776 44665 8899
Q ss_pred eeEEEEecCC-eeeEEeecccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcEEEEeecCCCCcceEEEEecCCCCE
Q 018248 159 GQVRVEDYGT-KKSKYITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSNAQW 237 (359)
Q Consensus 159 ~~v~~~~~~~-~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~ 237 (359)
+.+++|+... ..+..|.+|.++|..++|+.+|-+|+++++|+. |++||++..+..+++... ...++.++.|.+.|++
T Consensus 369 ~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~-V~lwDLRKl~n~kt~~l~-~~~~v~s~~fD~SGt~ 446 (506)
T KOG0289|consen 369 GVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAADDGS-VKLWDLRKLKNFKTIQLD-EKKEVNSLSFDQSGTY 446 (506)
T ss_pred ceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEecCCe-EEEEEehhhcccceeecc-ccccceeEEEcCCCCe
Confidence 9999998875 456778999999999999999999999999999 999999998888888754 3347999999999999
Q ss_pred EEEEcCCCcEEEEEccCCCCCCCCCccccCCCCCccCCCCCceeeeeEeeeecceEEecccceeEEeecCCcEEEeeecc
Q 018248 238 LAASSDKGTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSAISSFRFIRGVLPKYFSSKWSMAQFRLPENVQYLVGFGR 317 (359)
Q Consensus 238 l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 317 (359)
|+.++.|=+|++++-.+.. |.. ...+..+.+..+.+.|..
T Consensus 447 L~~~g~~l~Vy~~~k~~k~-------------------------------------W~~---~~~~~~~sg~st~v~Fg~ 486 (506)
T KOG0289|consen 447 LGIAGSDLQVYICKKKTKS-------------------------------------WTE---IKELADHSGLSTGVRFGE 486 (506)
T ss_pred EEeecceeEEEEEeccccc-------------------------------------cee---eehhhhcccccceeeecc
Confidence 9999777555555433332 111 111333446778899999
Q ss_pred cCCEEEEEecCCeEEEEEe
Q 018248 318 QNNTIVIVGLDGSYYKCEF 336 (359)
Q Consensus 318 ~~~~l~~~~~dg~i~v~~~ 336 (359)
..+++++++.|..++++.+
T Consensus 487 ~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 487 HAQYLASTSMDAILRLYAL 505 (506)
T ss_pred cceEEeeccchhheEEeec
Confidence 9999999999999998865
No 71
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.97 E-value=2.4e-28 Score=186.90 Aligned_cols=285 Identities=11% Similarity=0.138 Sum_probs=220.7
Q ss_pred CCCCceEEEEEccCCCEEEEec-CCceEEEEcCC------------C----cceeeeecccCCCCceeEEEEeccCCEEE
Q 018248 4 PDPITIHHLALNQDHGCFATGT-ETGFRVYLSDP------------Y----KPIMRRDFDRNPRGGTQLVSMLFRSNIIC 66 (359)
Q Consensus 4 ~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~------------~----~~~~~~~~~~~h~~~v~~~~~~~~~~~~~ 66 (359)
.|+.++.+.+|||||.++|+|+ |-.|+|.|++. + .....+++- .|..+|..+.|.|....++
T Consensus 110 ~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlY-DH~devn~l~FHPre~ILi 188 (430)
T KOG0640|consen 110 SHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLY-DHVDEVNDLDFHPRETILI 188 (430)
T ss_pred ecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehh-hccCcccceeecchhheEE
Confidence 6899999999999999999999 99999999871 1 113334554 7899999999998877766
Q ss_pred EEecCCCCCCeEEEEECCCccEEe---eeccCcceeEEEEecceeEEE---ecCeEEEEEcccceeeeeE---eccCCCc
Q 018248 67 LVNSGPHQSNKVMIWDDHENRYLG---ELSFRSEVKNVRLRRDRIVVV---LNQKVYVYNFTDLKLVDQI---ETVVNPT 137 (359)
Q Consensus 67 ~~~~~~~~d~~i~iwd~~~~~~~~---~~~~~~~v~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~---~~~~~~~ 137 (359)
..+ .|++|+++|+......+ .++...+|.++.|+|.|.+++ ....+++||+.+-++...- ..|...+
T Consensus 189 S~s----rD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai 264 (430)
T KOG0640|consen 189 SGS----RDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAI 264 (430)
T ss_pred ecc----CCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCcccccccce
Confidence 655 79999999987654333 344567899999999999888 6679999999988875544 3466678
Q ss_pred eeeeeecCCCccEEEecCCCCeeEEEEec-CCeeeEEe-eccc-ccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcEE
Q 018248 138 GLCDVSQNAGPMVMACPGLLKGQVRVEDY-GTKKSKYI-TAHA-SRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLL 214 (359)
Q Consensus 138 ~~~~~~~~~~~~~l~~~g~~d~~v~~~~~-~~~~~~~~-~~~~-~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~~ 214 (359)
..+.+++.++. .++ ++.||.|++|+- ..+++.++ .+|. ..|.+..|..+|+|+++.+.|.. +++|.+.+++++
T Consensus 265 ~~V~Ys~t~~l--YvT-aSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~-vkLWEi~t~R~l 340 (430)
T KOG0640|consen 265 TQVRYSSTGSL--YVT-ASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDST-VKLWEISTGRML 340 (430)
T ss_pred eEEEecCCccE--EEE-eccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcce-eeeeeecCCceE
Confidence 88888887763 444 789999999764 55677766 3454 47899999999999999999999 999999999999
Q ss_pred EEeecCCCCc---ceEEEEecCCCCEEEEEcC-CCcEEEEEccCCCCCCCCCccccCCCCCccCCCCCceeeeeEeeeec
Q 018248 215 QEMRRGAERA---EIYSLAFSSNAQWLAASSD-KGTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSAISSFRFIRGVL 290 (359)
Q Consensus 215 ~~~~~~~~~~---~i~~~~~s~~~~~l~~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (359)
.++.+....+ .-+...|+....+++.-.+ .+.+.-||-++.....
T Consensus 341 ~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~------------------------------- 389 (430)
T KOG0640|consen 341 KEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVA------------------------------- 389 (430)
T ss_pred EEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhh-------------------------------
Confidence 9988642111 2345567777777776553 4678999999876331
Q ss_pred ceEEecccceeEEeecCCcEEEeeecccCCEEEEEecCCeEEEEEeCC
Q 018248 291 PKYFSSKWSMAQFRLPENVQYLVGFGRQNNTIVIVGLDGSYYKCEFDP 338 (359)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~ 338 (359)
.+. -.|.+.+..+.-||.+..+++++.|-.++.|.-.+
T Consensus 390 --l~s--------lgHn~a~R~i~HSP~~p~FmTcsdD~raRFWyrr~ 427 (430)
T KOG0640|consen 390 --LLS--------LGHNGAVRWIVHSPVEPAFMTCSDDFRARFWYRRV 427 (430)
T ss_pred --hcc--------cCCCCCceEEEeCCCCCceeeecccceeeeeeecc
Confidence 011 12567788888899999999999999999996543
No 72
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=5.7e-26 Score=166.58 Aligned_cols=282 Identities=16% Similarity=0.226 Sum_probs=217.5
Q ss_pred CCCceEEEEEccCCCEEEEec-CCceEEEEcCC------C----c----ceeeeecccCCCCceeEEEEeccCCEEEEEe
Q 018248 5 DPITIHHLALNQDHGCFATGT-ETGFRVYLSDP------Y----K----PIMRRDFDRNPRGGTQLVSMLFRSNIICLVN 69 (359)
Q Consensus 5 h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~------~----~----~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~ 69 (359)
....|.+++|+|.|.+.|+|+ .++++|-.... . + ..+.+. ..|.+.+.+++|++.+..++..+
T Consensus 31 dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~--khhkgsiyc~~ws~~geliatgs 108 (350)
T KOG0641|consen 31 DSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRN--KHHKGSIYCTAWSPCGELIATGS 108 (350)
T ss_pred chhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeec--cccCccEEEEEecCccCeEEecC
Confidence 456799999999999999999 78887764321 1 1 111122 26889999999999999988877
Q ss_pred cCCCCCCeEEEEECCCccE-----Eeeec-cCcceeEEEEecc----eeEEE----ecCeEEEEEcccceeeeeEeccCC
Q 018248 70 SGPHQSNKVMIWDDHENRY-----LGELS-FRSEVKNVRLRRD----RIVVV----LNQKVYVYNFTDLKLVDQIETVVN 135 (359)
Q Consensus 70 ~~~~~d~~i~iwd~~~~~~-----~~~~~-~~~~v~~~~~~~~----~~~~~----~d~~i~i~d~~~~~~~~~~~~~~~ 135 (359)
.|.+|++.-.....+ -.++. |.+.|++++|..+ +.+++ .|..|++-|..+++..+.+.+|.+
T Consensus 109 ----ndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~sghtg 184 (350)
T KOG0641|consen 109 ----NDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALSGHTG 184 (350)
T ss_pred ----CCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeecCCcc
Confidence 789999876544322 23445 8999999999653 45555 778899999999999999999988
Q ss_pred CceeeeeecCCCccEEEecCCCCeeEEEEecCCe-eeEEee--cc-----cccccEEEEccCCcEEEEEeCCCCeEEEEE
Q 018248 136 PTGLCDVSQNAGPMVMACPGLLKGQVRVEDYGTK-KSKYIT--AH-----ASRIASIAMTLDGRFVATASSKGTLIRVFN 207 (359)
Q Consensus 136 ~~~~~~~~~~~~~~~l~~~g~~d~~v~~~~~~~~-~~~~~~--~~-----~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd 207 (359)
.+- .-+++++.. +++ |+.|.+|++|+.+-. ++..+. -| ...|.+++..|.|++|++|-.|.. ..+||
T Consensus 185 hil-alyswn~~m--~~s-gsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dss-c~lyd 259 (350)
T KOG0641|consen 185 HIL-ALYSWNGAM--FAS-GSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSS-CMLYD 259 (350)
T ss_pred cEE-EEEEecCcE--EEc-cCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCc-eEEEE
Confidence 654 334566543 554 999999999998753 333332 12 256899999999999999999999 99999
Q ss_pred cCCCcEEEEeecCCCCcceEEEEecCCCCEEEEEcCCCcEEEEEccCCCCCCCCCccccCCCCCccCCCCCceeeeeEee
Q 018248 208 TMDGSLLQEMRRGAERAEIYSLAFSSNAQWLAASSDKGTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSAISSFRFIR 287 (359)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (359)
++.++.++.+.. |...|.++.|||...+|++++.|..|++-|++..-..
T Consensus 260 irg~r~iq~f~p--hsadir~vrfsp~a~yllt~syd~~ikltdlqgdla~----------------------------- 308 (350)
T KOG0641|consen 260 IRGGRMIQRFHP--HSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAH----------------------------- 308 (350)
T ss_pred eeCCceeeeeCC--CccceeEEEeCCCceEEEEecccceEEEeecccchhh-----------------------------
Confidence 999999999987 7899999999999999999999999999999764311
Q ss_pred eecceEEecccceeEEeecCCcEEEeeecccCCEEEEEecCCeEEEEEeC
Q 018248 288 GVLPKYFSSKWSMAQFRLPENVQYLVGFGRQNNTIVIVGLDGSYYKCEFD 337 (359)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~ 337 (359)
.+|.+.- .-|.+.+..+.|+|+.-.+++.++|.++.+|.++
T Consensus 309 -el~~~vv--------~ehkdk~i~~rwh~~d~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 309 -ELPIMVV--------AEHKDKAIQCRWHPQDFSFISSSADKTATLWALN 349 (350)
T ss_pred -cCceEEE--------EeccCceEEEEecCccceeeeccCcceEEEeccC
Confidence 1221111 1244566789999998889999999999999875
No 73
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=1.2e-28 Score=183.34 Aligned_cols=237 Identities=14% Similarity=0.155 Sum_probs=190.6
Q ss_pred CCceEEEEEccCC-CEEEEec-CCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEEC
Q 018248 6 PITIHHLALNQDH-GCFATGT-ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDD 83 (359)
Q Consensus 6 ~~~v~~~~~s~~g-~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~ 83 (359)
.+.+..++|+++. ..+++++ ||+++|||+..... ....++ .|..+|..+.+....+..++.+. .|++|++|+.
T Consensus 60 ~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~-Pi~~~k-EH~~EV~Svdwn~~~r~~~ltsS---WD~TiKLW~~ 134 (311)
T KOG0277|consen 60 EDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSK-PIHKFK-EHKREVYSVDWNTVRRRIFLTSS---WDGTIKLWDP 134 (311)
T ss_pred ccceeEeeecCCCcceEEEEecCceEEEeccCCCCc-chhHHH-hhhhheEEeccccccceeEEeec---cCCceEeecC
Confidence 4678899999864 3455555 99999999764333 234555 79999999999887776666653 7999999999
Q ss_pred CCccEEeeec-cCcceeEEEEecce-eEEE---ecCeEEEEEcccceeeeeEeccCCCceeeeeecCCCccEEEecCCCC
Q 018248 84 HENRYLGELS-FRSEVKNVRLRRDR-IVVV---LNQKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAGPMVMACPGLLK 158 (359)
Q Consensus 84 ~~~~~~~~~~-~~~~v~~~~~~~~~-~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d 158 (359)
..++.++++. |...|....|+|.. .+++ .|+++++||++.......++.|...+.++.|+..... ++++ |+.|
T Consensus 135 ~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~-vl~T-g~vd 212 (311)
T KOG0277|consen 135 NRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHN-VLAT-GGVD 212 (311)
T ss_pred CCCcceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccCCc-EEEe-cCCC
Confidence 9999999998 99999999999964 4444 8999999999654444448888888888999887765 3444 7789
Q ss_pred eeEEEEecCC--eeeEEeecccccccEEEEccCC-cEEEEEeCCCCeEEEEEcCCCcE-EEEeecCCCCcceEEEEecC-
Q 018248 159 GQVRVEDYGT--KKSKYITAHASRIASIAMTLDG-RFVATASSKGTLIRVFNTMDGSL-LQEMRRGAERAEIYSLAFSS- 233 (359)
Q Consensus 159 ~~v~~~~~~~--~~~~~~~~~~~~i~~~~~s~~~-~~l~~~~~dg~~i~iwd~~~~~~-~~~~~~~~~~~~i~~~~~s~- 233 (359)
+.|+.|+.+. .++..+.+|.-.|..++|||.. .+||+++.|=+ ++|||...+.. +.+... |...+..+.||+
T Consensus 213 ~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT-~riw~~~~~ds~~e~~~~--HtEFv~g~Dws~~ 289 (311)
T KOG0277|consen 213 NLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASASYDMT-VRIWDPERQDSAIETVDH--HTEFVCGLDWSLF 289 (311)
T ss_pred ceEEEEehhhccccceeecCCceEEEEEecCcchhhHhhhccccce-EEecccccchhhhhhhhc--cceEEeccccccc
Confidence 9999999876 5677889999999999999965 48999999999 99999875543 333433 778899999997
Q ss_pred CCCEEEEEcCCCcEEEEEc
Q 018248 234 NAQWLAASSDKGTVHVFGL 252 (359)
Q Consensus 234 ~~~~l~~~~~dg~i~iw~~ 252 (359)
++.++|+++.|+.++||+.
T Consensus 290 ~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 290 DPGQVASTGWDELLYVWNP 308 (311)
T ss_pred cCceeeecccccceeeecc
Confidence 6679999999999999984
No 74
>PTZ00421 coronin; Provisional
Probab=99.96 E-value=3.3e-26 Score=198.18 Aligned_cols=240 Identities=12% Similarity=0.102 Sum_probs=180.5
Q ss_pred CceEEEEEccCCCEEEEec-CCceEEEEcCCCcceee-----------eecccCCCCceeEEEEec-cCCEEEEEecCCC
Q 018248 7 ITIHHLALNQDHGCFATGT-ETGFRVYLSDPYKPIMR-----------RDFDRNPRGGTQLVSMLF-RSNIICLVNSGPH 73 (359)
Q Consensus 7 ~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~-----------~~~~~~h~~~v~~~~~~~-~~~~~~~~~~~~~ 73 (359)
..|.....++|+..+++++ +.....|+...+...+. ..+. ||.+.|..++|++ +++.++.++
T Consensus 21 ~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~-GH~~~V~~v~fsP~d~~~LaSgS---- 95 (493)
T PTZ00421 21 LNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILL-GQEGPIIDVAFNPFDPQKLFTAS---- 95 (493)
T ss_pred eccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEe-CCCCCEEEEEEcCCCCCEEEEEe----
Confidence 4566666777866666666 66666776543321110 1233 8999999999998 667777666
Q ss_pred CCCeEEEEECCCc-------cEEeeec-cCcceeEEEEecce-eEEE---ecCeEEEEEcccceeeeeEeccCCCceeee
Q 018248 74 QSNKVMIWDDHEN-------RYLGELS-FRSEVKNVRLRRDR-IVVV---LNQKVYVYNFTDLKLVDQIETVVNPTGLCD 141 (359)
Q Consensus 74 ~d~~i~iwd~~~~-------~~~~~~~-~~~~v~~~~~~~~~-~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~ 141 (359)
.|++|++||+.++ +.+..+. |...|.+++|+|++ .+++ .|+.|++||+++++.+..+..|...+..++
T Consensus 96 ~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla 175 (493)
T PTZ00421 96 EDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLE 175 (493)
T ss_pred CCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEE
Confidence 7999999998765 2455666 88999999999975 4555 799999999999999889988999999999
Q ss_pred eecCCCccEEEecCCCCeeEEEEecC-CeeeEEeeccccc-ccEEEEccCCcEEEEEe----CCCCeEEEEEcCCCcE-E
Q 018248 142 VSQNAGPMVMACPGLLKGQVRVEDYG-TKKSKYITAHASR-IASIAMTLDGRFVATAS----SKGTLIRVFNTMDGSL-L 214 (359)
Q Consensus 142 ~~~~~~~~~l~~~g~~d~~v~~~~~~-~~~~~~~~~~~~~-i~~~~~s~~~~~l~~~~----~dg~~i~iwd~~~~~~-~ 214 (359)
|+|++.. +++ ++.|+.|++|+.+ ++.+..+.+|.+. ...+.|.+++..+++++ .|+. |++||+++... +
T Consensus 176 ~spdG~l--Lat-gs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~-VklWDlr~~~~p~ 251 (493)
T PTZ00421 176 WNLDGSL--LCT-TSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQ-IMLWDTRKMASPY 251 (493)
T ss_pred EECCCCE--EEE-ecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCe-EEEEeCCCCCCce
Confidence 9998764 665 6789999998876 4566777888764 45678899888777654 4788 99999987653 3
Q ss_pred EEeecCCCCcceEEEEecCCCCEEEEEc-CCCcEEEEEccCCC
Q 018248 215 QEMRRGAERAEIYSLAFSSNAQWLAASS-DKGTVHVFGLKVDS 256 (359)
Q Consensus 215 ~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~dg~i~iw~~~~~~ 256 (359)
.....+ ....+....|++++++|++++ .|+.|++||+.++.
T Consensus 252 ~~~~~d-~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~ 293 (493)
T PTZ00421 252 STVDLD-QSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNER 293 (493)
T ss_pred eEeccC-CCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCc
Confidence 333321 334566778999999998887 59999999998865
No 75
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.96 E-value=3.1e-27 Score=180.05 Aligned_cols=272 Identities=11% Similarity=0.075 Sum_probs=200.7
Q ss_pred CCCCCCceEEEEEccC-CCEEEEec-CCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEE
Q 018248 2 NQPDPITIHHLALNQD-HGCFATGT-ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVM 79 (359)
Q Consensus 2 ~~~h~~~v~~~~~s~~-g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~ 79 (359)
.++..+.|.+++|||. ..++++++ |++||+|+++.......+... .|.+++..++|+-++..++..+ .|+.++
T Consensus 23 ~~pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~-~~~~PvL~v~WsddgskVf~g~----~Dk~~k 97 (347)
T KOG0647|consen 23 PNPPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQ-SHDGPVLDVCWSDDGSKVFSGG----CDKQAK 97 (347)
T ss_pred CCCcccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhh-ccCCCeEEEEEccCCceEEeec----cCCceE
Confidence 4678899999999994 45556777 999999999863222222222 6899999999999998877777 789999
Q ss_pred EEECCCccEEeeeccCcceeEEEEeccee--EEE---ecCeEEEEEcccceeeeeEeccCCCceeeeeecCCCccEEEec
Q 018248 80 IWDDHENRYLGELSFRSEVKNVRLRRDRI--VVV---LNQKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAGPMVMACP 154 (359)
Q Consensus 80 iwd~~~~~~~~~~~~~~~v~~~~~~~~~~--~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 154 (359)
+||+.+++....-.|..+|..+.|-+... .++ .|.+|+.||++..+++.++..++. +. +..--... ++.
T Consensus 98 ~wDL~S~Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeR-vY--a~Dv~~pm--~vV- 171 (347)
T KOG0647|consen 98 LWDLASGQVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPER-VY--AADVLYPM--AVV- 171 (347)
T ss_pred EEEccCCCeeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccce-ee--ehhccCce--eEE-
Confidence 99999997776666999999999987655 445 899999999999999888876543 33 22222222 332
Q ss_pred CCCCeeEEEEecCCeeeE--Ee-ecccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCC--cEEEEeecCCC-------
Q 018248 155 GLLKGQVRVEDYGTKKSK--YI-TAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDG--SLLQEMRRGAE------- 222 (359)
Q Consensus 155 g~~d~~v~~~~~~~~~~~--~~-~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~--~~~~~~~~~~~------- 222 (359)
+..++.|.++.+...+.. .+ ...+-.++|++..+|....|.|+-+|. +.|..+..+ +.-..|+-|..
T Consensus 172 ata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGr-v~iq~id~~~~~~nFtFkCHR~~~~~~~~ 250 (347)
T KOG0647|consen 172 ATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGR-VAIQYIDDPNPKDNFTFKCHRSTNSVNDD 250 (347)
T ss_pred EecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecce-EEEEecCCCCccCceeEEEeccCCCCCCc
Confidence 445888888887653321 11 123456889999999888899999999 999988776 33334444221
Q ss_pred CcceEEEEecCCCCEEEEEcCCCcEEEEEccCCCCCCCCCccccCCCCCccCCCCCceeeeeEeeeecceEEecccceeE
Q 018248 223 RAEIYSLAFSSNAQWLAASSDKGTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSAISSFRFIRGVLPKYFSSKWSMAQ 302 (359)
Q Consensus 223 ~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (359)
--.|++++|+|....|+|++.||+..+||-+...+.. .
T Consensus 251 VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk-----------------------------------~------- 288 (347)
T KOG0647|consen 251 VYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLK-----------------------------------T------- 288 (347)
T ss_pred eEEecceEeecccceEEEecCCceEEEecchhhhhhh-----------------------------------c-------
Confidence 1257889999999999999999999999988766331 0
Q ss_pred EeecCCcEEEeeecccCCEEEEEec
Q 018248 303 FRLPENVQYLVGFGRQNNTIVIVGL 327 (359)
Q Consensus 303 ~~~~~~~v~~~~~s~~~~~l~~~~~ 327 (359)
.+.+..+|++++|+.+|.+++-+..
T Consensus 289 s~~~~qpItcc~fn~~G~ifaYA~g 313 (347)
T KOG0647|consen 289 SETHPQPITCCSFNRNGSIFAYALG 313 (347)
T ss_pred cCcCCCccceeEecCCCCEEEEEee
Confidence 1223468899999999988775543
No 76
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.96 E-value=3.9e-28 Score=205.85 Aligned_cols=235 Identities=16% Similarity=0.191 Sum_probs=208.8
Q ss_pred CceEEEEEccCCCEEEEec-CCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEECCC
Q 018248 7 ITIHHLALNQDHGCFATGT-ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDDHE 85 (359)
Q Consensus 7 ~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~~~ 85 (359)
+.+.+..|-|.++++++|. .|.+.+||+.......... +|.+.++.++..|++...++++ .|.+|++||..-
T Consensus 413 ~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~---AHdgaIWsi~~~pD~~g~vT~s----aDktVkfWdf~l 485 (888)
T KOG0306|consen 413 GYILASKFVPGDRYIVLGTKNGELQVFDLASASLVETIR---AHDGAIWSISLSPDNKGFVTGS----ADKTVKFWDFKL 485 (888)
T ss_pred ccEEEEEecCCCceEEEeccCCceEEEEeehhhhhhhhh---ccccceeeeeecCCCCceEEec----CCcEEEEEeEEE
Confidence 4688999999999999999 9999999999766553333 7999999999999999999998 799999999531
Q ss_pred -----cc--E------EeeeccCcceeEEEEecceeEEE---ecCeEEEEEcccceeeeeEeccCCCceeeeeecCCCcc
Q 018248 86 -----NR--Y------LGELSFRSEVKNVRLRRDRIVVV---LNQKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAGPM 149 (359)
Q Consensus 86 -----~~--~------~~~~~~~~~v~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (359)
+. . .++++.+..|.|+.++||+++++ .|++++||-+.+.+....+.+|.-||.++.++|+++.
T Consensus 486 ~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSkl- 564 (888)
T KOG0306|consen 486 VVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKL- 564 (888)
T ss_pred EeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCe-
Confidence 11 1 13344678999999999999999 8999999999999999999999999999999999874
Q ss_pred EEEecCCCCeeEEEEecC-CeeeEEeecccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcEEEEeecCCCCcceEE
Q 018248 150 VMACPGLLKGQVRVEDYG-TKKSKYITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRRGAERAEIYS 228 (359)
Q Consensus 150 ~l~~~g~~d~~v~~~~~~-~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~i~~ 228 (359)
+++ |+.|..|++|-.+ +.+-+.+.+|...|.++.|-|....+.+++.|+. |+-||-...+.++.+.+ |...|++
T Consensus 565 -ivT-gSADKnVKiWGLdFGDCHKS~fAHdDSvm~V~F~P~~~~FFt~gKD~k-vKqWDg~kFe~iq~L~~--H~~ev~c 639 (888)
T KOG0306|consen 565 -IVT-GSADKNVKIWGLDFGDCHKSFFAHDDSVMSVQFLPKTHLFFTCGKDGK-VKQWDGEKFEEIQKLDG--HHSEVWC 639 (888)
T ss_pred -EEe-ccCCCceEEeccccchhhhhhhcccCceeEEEEcccceeEEEecCcce-EEeechhhhhhheeecc--chheeee
Confidence 555 8899999999988 4777889999999999999999999999999999 99999999999999988 6689999
Q ss_pred EEecCCCCEEEEEcCCCcEEEEEccC
Q 018248 229 LAFSSNAQWLAASSDKGTVHVFGLKV 254 (359)
Q Consensus 229 ~~~s~~~~~l~~~~~dg~i~iw~~~~ 254 (359)
++.+|+|.++++++.|.+|++|....
T Consensus 640 Lav~~~G~~vvs~shD~sIRlwE~td 665 (888)
T KOG0306|consen 640 LAVSPNGSFVVSSSHDKSIRLWERTD 665 (888)
T ss_pred eEEcCCCCeEEeccCCceeEeeeccC
Confidence 99999999999999999999998765
No 77
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=1.7e-28 Score=194.40 Aligned_cols=238 Identities=13% Similarity=0.202 Sum_probs=187.9
Q ss_pred CCCCceEEEEEccCCCEEEEec-CCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEE
Q 018248 4 PDPITIHHLALNQDHGCFATGT-ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWD 82 (359)
Q Consensus 4 ~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd 82 (359)
.|..+|..+.||||.++|++|+ +..+.+||+.+++.. ..+..+|...+.+.+|.|++..++..+ .|+.+..||
T Consensus 267 gh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~--~~y~~~~~~S~~sc~W~pDg~~~V~Gs----~dr~i~~wd 340 (519)
T KOG0293|consen 267 GHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLR--HLYPSGLGFSVSSCAWCPDGFRFVTGS----PDRTIIMWD 340 (519)
T ss_pred cccCceEEEEECCCCCeEEecCchHheeeccCCcchhh--hhcccCcCCCcceeEEccCCceeEecC----CCCcEEEec
Confidence 5889999999999999999888 999999999998766 444435667888999999988866655 689999999
Q ss_pred CCCccEEeeec--cCcceeEEEEecceeEEE---ecCeEEEEEcccceeeeeEeccCCCceeeeeecCCCccEEEecCCC
Q 018248 83 DHENRYLGELS--FRSEVKNVRLRRDRIVVV---LNQKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAGPMVMACPGLL 157 (359)
Q Consensus 83 ~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~ 157 (359)
+.. ..+...+ ....|.+++.++||++++ .|..|++|+.++......+. ...++...+++.+++..++ .-.
T Consensus 341 lDg-n~~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lis-e~~~its~~iS~d~k~~Lv---nL~ 415 (519)
T KOG0293|consen 341 LDG-NILGNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLIS-EEQPITSFSISKDGKLALV---NLQ 415 (519)
T ss_pred CCc-chhhcccccccceeEEEEEcCCCcEEEEEecccceeeechhhhhhhcccc-ccCceeEEEEcCCCcEEEE---Ecc
Confidence 654 4444444 346799999999998887 89999999987655444333 3567788888888875333 346
Q ss_pred CeeEEEEecCC-eeeEEeecccccccE--EEEc-cCCcEEEEEeCCCCeEEEEEcCCCcEEEEeecCCCCcceEEEEecC
Q 018248 158 KGQVRVEDYGT-KKSKYITAHASRIAS--IAMT-LDGRFVATASSKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSS 233 (359)
Q Consensus 158 d~~v~~~~~~~-~~~~~~~~~~~~i~~--~~~s-~~~~~l~~~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~ 233 (359)
+..+++|+... ..++.+.+|+..-.- -+|- .+..++|+|++|+. |+||+..+|+++.++.+ |...|++++|+|
T Consensus 416 ~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~k-vyIWhr~sgkll~~LsG--Hs~~vNcVswNP 492 (519)
T KOG0293|consen 416 DQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSK-VYIWHRISGKLLAVLSG--HSKTVNCVSWNP 492 (519)
T ss_pred cCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcceEEecCCCce-EEEEEccCCceeEeecC--CcceeeEEecCC
Confidence 88999998874 445566777654222 2343 35579999999999 99999999999999998 778999999999
Q ss_pred C-CCEEEEEcCCCcEEEEEccCC
Q 018248 234 N-AQWLAASSDKGTVHVFGLKVD 255 (359)
Q Consensus 234 ~-~~~l~~~~~dg~i~iw~~~~~ 255 (359)
. -.++|+|++||+||||.....
T Consensus 493 ~~p~m~ASasDDgtIRIWg~~~~ 515 (519)
T KOG0293|consen 493 ADPEMFASASDDGTIRIWGPSDN 515 (519)
T ss_pred CCHHHhhccCCCCeEEEecCCcc
Confidence 4 568999999999999988754
No 78
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=6.6e-28 Score=178.41 Aligned_cols=260 Identities=15% Similarity=0.233 Sum_probs=198.9
Q ss_pred CCCCCCceEEEEEccCCCEEEEec-CCceEEEEcCCCcc-eeeeecccCCCCceeEEEEec--cCCEEEEEecCCCCCCe
Q 018248 2 NQPDPITIHHLALNQDHGCFATGT-ETGFRVYLSDPYKP-IMRRDFDRNPRGGTQLVSMLF--RSNIICLVNSGPHQSNK 77 (359)
Q Consensus 2 ~~~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~-~~~~~~~~~h~~~v~~~~~~~--~~~~~~~~~~~~~~d~~ 77 (359)
+..|.+-|..+...--|++||+++ |++|+|+...+... ....++. ||.+++.-++|.. -++.++.++ .||+
T Consensus 7 dt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~-Gh~GPVwqv~wahPk~G~iLAScs----YDgk 81 (299)
T KOG1332|consen 7 DTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELT-GHSGPVWKVAWAHPKFGTILASCS----YDGK 81 (299)
T ss_pred hhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEec-CCCCCeeEEeecccccCcEeeEee----cCce
Confidence 457889999999999999999999 99999999986654 6667777 9999999999986 456666666 7999
Q ss_pred EEEEECCCccEEeeeccCcceeEEEEecceeEEEecCeEEEEEcccceeeeeEeccCCCceeeeeecCCCccEEEecCCC
Q 018248 78 VMIWDDHENRYLGELSFRSEVKNVRLRRDRIVVVLNQKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAGPMVMACPGLL 157 (359)
Q Consensus 78 i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~ 157 (359)
|.||.-.+++-. .......|...+++++|.|++-++.|++ ++.
T Consensus 82 VIiWke~~g~w~------------------------------------k~~e~~~h~~SVNsV~wapheygl~Lac-asS 124 (299)
T KOG1332|consen 82 VIIWKEENGRWT------------------------------------KAYEHAAHSASVNSVAWAPHEYGLLLAC-ASS 124 (299)
T ss_pred EEEEecCCCchh------------------------------------hhhhhhhhcccceeecccccccceEEEE-eeC
Confidence 999985554211 1223345677788899999998888998 778
Q ss_pred CeeEEEEecCC----eeeEEeecccccccEEEEccC---C-----------cEEEEEeCCCCeEEEEEcCCCcEE--EEe
Q 018248 158 KGQVRVEDYGT----KKSKYITAHASRIASIAMTLD---G-----------RFVATASSKGTLIRVFNTMDGSLL--QEM 217 (359)
Q Consensus 158 d~~v~~~~~~~----~~~~~~~~~~~~i~~~~~s~~---~-----------~~l~~~~~dg~~i~iwd~~~~~~~--~~~ 217 (359)
||.|.|...+. ...+....|.-.+++++|.|- | +.|++|+.|.. |+||+..+++-+ ..+
T Consensus 125 DG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~-VkiW~~~~~~w~~e~~l 203 (299)
T KOG1332|consen 125 DGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNL-VKIWKFDSDSWKLERTL 203 (299)
T ss_pred CCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccccccCcccccceeeccCCccc-eeeeecCCcchhhhhhh
Confidence 99999944332 234556789999999999986 4 56999999999 999998876432 335
Q ss_pred ecCCCCcceEEEEecCCC----CEEEEEcCCCcEEEEEccCCCCCCCCCccccCCCCCccCCCCCceeeeeEeeeecceE
Q 018248 218 RRGAERAEIYSLAFSSNA----QWLAASSDKGTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSAISSFRFIRGVLPKY 293 (359)
Q Consensus 218 ~~~~~~~~i~~~~~s~~~----~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (359)
.. |...|..++|.|.- .+|++++.||+|.||-.+... .+ +-..
T Consensus 204 ~~--H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~-e~-----------------------------wk~t- 250 (299)
T KOG1332|consen 204 EG--HKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEY-EP-----------------------------WKKT- 250 (299)
T ss_pred hh--cchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCcc-Cc-----------------------------cccc-
Confidence 55 88899999999964 489999999999999887332 11 0000
Q ss_pred EecccceeEEeecCCcEEEeeecccCCEEEEEecCCeEEEEEeCCCCCCceEEe
Q 018248 294 FSSKWSMAQFRLPENVQYLVGFGRQNNTIVIVGLDGSYYKCEFDPMKGGEMHQL 347 (359)
Q Consensus 294 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~ 347 (359)
.++--...+..+.||+.|+.|++++.|.++.+|+=+. .|+-++.
T Consensus 251 --------ll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~~--~Gkw~~v 294 (299)
T KOG1332|consen 251 --------LLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKENV--DGKWEEV 294 (299)
T ss_pred --------ccccCCcceEEEEEeccccEEEEecCCcEEEEEEeCC--CCcEEEc
Confidence 0111235688999999999999999999999997655 4555443
No 79
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.96 E-value=3.3e-29 Score=194.48 Aligned_cols=226 Identities=16% Similarity=0.274 Sum_probs=183.7
Q ss_pred CCceeEEEEeccCCEEEEEecCCCCCCeEEEEECCCccEEeeec-cCcceeEEEEecceeEEE---ecCeEEEEEcccce
Q 018248 50 RGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDDHENRYLGELS-FRSEVKNVRLRRDRIVVV---LNQKVYVYNFTDLK 125 (359)
Q Consensus 50 ~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~---~d~~i~i~d~~~~~ 125 (359)
...|.++. ++...++... .|++|+|||..+..++..+. |.+.|.|+.+... .++ .|.+|++||.++++
T Consensus 197 skgVYClQ--YDD~kiVSGl----rDnTikiWD~n~~~c~~~L~GHtGSVLCLqyd~r--viisGSSDsTvrvWDv~tge 268 (499)
T KOG0281|consen 197 SKGVYCLQ--YDDEKIVSGL----RDNTIKIWDKNSLECLKILTGHTGSVLCLQYDER--VIVSGSSDSTVRVWDVNTGE 268 (499)
T ss_pred CCceEEEE--ecchhhhccc----ccCceEEeccccHHHHHhhhcCCCcEEeeeccce--EEEecCCCceEEEEeccCCc
Confidence 34455544 4455444333 68999999999999988887 9999999998654 444 89999999999999
Q ss_pred eeeeEeccCCCceeeeeecCCCccEEEecCCCCeeEEEEecCCee----eEEeecccccccEEEEccCCcEEEEEeCCCC
Q 018248 126 LVDQIETVVNPTGLCDVSQNAGPMVMACPGLLKGQVRVEDYGTKK----SKYITAHASRIASIAMTLDGRFVATASSKGT 201 (359)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~v~~~~~~~~~----~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~ 201 (359)
++.++-.|-..+--+.|+. . ++++ ++.|.++.+|+..... .+.+.+|...|+.+.|+ .+++++++.|.+
T Consensus 269 ~l~tlihHceaVLhlrf~n--g--~mvt-cSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd--~kyIVsASgDRT 341 (499)
T KOG0281|consen 269 PLNTLIHHCEAVLHLRFSN--G--YMVT-CSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSASGDRT 341 (499)
T ss_pred hhhHHhhhcceeEEEEEeC--C--EEEE-ecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccc--cceEEEecCCce
Confidence 9999988888776666643 2 2444 6789999999987633 34567999999999994 569999999999
Q ss_pred eEEEEEcCCCcEEEEeecCCCCcceEEEEecCCCCEEEEEcCCCcEEEEEccCCCCCCCCCccccCCCCCccCCCCCcee
Q 018248 202 LIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSNAQWLAASSDKGTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSAIS 281 (359)
Q Consensus 202 ~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (359)
|++|++.+++.++++.+ |...|-|+.+ .++++++|+.|.+|++||+..+...
T Consensus 342 -ikvW~~st~efvRtl~g--HkRGIAClQY--r~rlvVSGSSDntIRlwdi~~G~cL----------------------- 393 (499)
T KOG0281|consen 342 -IKVWSTSTCEFVRTLNG--HKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACL----------------------- 393 (499)
T ss_pred -EEEEeccceeeehhhhc--ccccceehhc--cCeEEEecCCCceEEEEeccccHHH-----------------------
Confidence 99999999999999987 7788988888 6899999999999999999998732
Q ss_pred eeeEeeeecceEEecccceeEEeecCCcEEEeeecccCCEEEEEecCCeEEEEEeCCC
Q 018248 282 SFRFIRGVLPKYFSSKWSMAQFRLPENVQYLVGFGRQNNTIVIVGLDGSYYKCEFDPM 339 (359)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~~ 339 (359)
++ ++.|++-|.++.|. .+.|++|+.||+|+||++...
T Consensus 394 ----------Rv---------LeGHEeLvRciRFd--~krIVSGaYDGkikvWdl~aa 430 (499)
T KOG0281|consen 394 ----------RV---------LEGHEELVRCIRFD--NKRIVSGAYDGKIKVWDLQAA 430 (499)
T ss_pred ----------HH---------HhchHHhhhheeec--CceeeeccccceEEEEecccc
Confidence 22 34456778899995 479999999999999998654
No 80
>PTZ00421 coronin; Provisional
Probab=99.96 E-value=4e-26 Score=197.70 Aligned_cols=199 Identities=14% Similarity=0.218 Sum_probs=158.2
Q ss_pred cCcceeEEEEec-ceeEEE---ecCeEEEEEcccc-------eeeeeEeccCCCceeeeeecCCCccEEEecCCCCeeEE
Q 018248 94 FRSEVKNVRLRR-DRIVVV---LNQKVYVYNFTDL-------KLVDQIETVVNPTGLCDVSQNAGPMVMACPGLLKGQVR 162 (359)
Q Consensus 94 ~~~~v~~~~~~~-~~~~~~---~d~~i~i~d~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~v~ 162 (359)
|.+.|.+++|+| ++.+++ .|++|++||+.++ +.+..+.+|...+..++|+|++.. ++++ ++.|+.|+
T Consensus 74 H~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~-iLaS-gs~DgtVr 151 (493)
T PTZ00421 74 QEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMN-VLAS-AGADMVVN 151 (493)
T ss_pred CCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCC-EEEE-EeCCCEEE
Confidence 889999999999 776666 8999999999654 346678889999999999998754 3554 66799999
Q ss_pred EEecCC-eeeEEeecccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcEEEEeecCCCCc-ceEEEEecCCCCEEEE
Q 018248 163 VEDYGT-KKSKYITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRRGAERA-EIYSLAFSSNAQWLAA 240 (359)
Q Consensus 163 ~~~~~~-~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~~~~~~~~~~~~-~i~~~~~s~~~~~l~~ 240 (359)
+|+... .....+..|...|.+++|+|+|.+|++++.|+. |++||+++++.+..+.. |.+ .+..+.|.+++..|++
T Consensus 152 IWDl~tg~~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~-IrIwD~rsg~~v~tl~~--H~~~~~~~~~w~~~~~~ivt 228 (493)
T PTZ00421 152 VWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKK-LNIIDPRDGTIVSSVEA--HASAKSQRCLWAKRKDLIIT 228 (493)
T ss_pred EEECCCCeEEEEEcCCCCceEEEEEECCCCEEEEecCCCE-EEEEECCCCcEEEEEec--CCCCcceEEEEcCCCCeEEE
Confidence 999764 566778889999999999999999999999999 99999999999888876 433 3457789998888776
Q ss_pred Ec----CCCcEEEEEccCCCCCCCCCccccCCCCCccCCCCCceeeeeEeeeecceEEecccceeEEeec-CCcEEEeee
Q 018248 241 SS----DKGTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSAISSFRFIRGVLPKYFSSKWSMAQFRLP-ENVQYLVGF 315 (359)
Q Consensus 241 ~~----~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~ 315 (359)
++ .|+.|++||+++..... .....+ ...+....|
T Consensus 229 ~G~s~s~Dr~VklWDlr~~~~p~-----------------------------------------~~~~~d~~~~~~~~~~ 267 (493)
T PTZ00421 229 LGCSKSQQRQIMLWDTRKMASPY-----------------------------------------STVDLDQSSALFIPFF 267 (493)
T ss_pred EecCCCCCCeEEEEeCCCCCCce-----------------------------------------eEeccCCCCceEEEEE
Confidence 54 47899999998754210 000011 123456788
Q ss_pred cccCCEEEEEec-CCeEEEEEeCC
Q 018248 316 GRQNNTIVIVGL-DGSYYKCEFDP 338 (359)
Q Consensus 316 s~~~~~l~~~~~-dg~i~v~~~~~ 338 (359)
+++++.|++++. ||.|++|++..
T Consensus 268 d~d~~~L~lggkgDg~Iriwdl~~ 291 (493)
T PTZ00421 268 DEDTNLLYIGSKGEGNIRCFELMN 291 (493)
T ss_pred cCCCCEEEEEEeCCCeEEEEEeeC
Confidence 999999999885 99999999975
No 81
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.96 E-value=1.6e-28 Score=182.37 Aligned_cols=238 Identities=15% Similarity=0.188 Sum_probs=200.7
Q ss_pred CCCCceEEEEEccCCCEEEEec-CCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEE
Q 018248 4 PDPITIHHLALNQDHGCFATGT-ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWD 82 (359)
Q Consensus 4 ~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd 82 (359)
.|++.|++...+.+...-|++. |=+-++||.-++..+ ..| .|..-|..++|+.+.+.++..+ .+..++|+|
T Consensus 57 ghkgavw~~~l~~na~~aasaaadftakvw~a~tgdel--hsf--~hkhivk~~af~~ds~~lltgg----~ekllrvfd 128 (334)
T KOG0278|consen 57 GHKGAVWSATLNKNATRAASAAADFTAKVWDAVTGDEL--HSF--EHKHIVKAVAFSQDSNYLLTGG----QEKLLRVFD 128 (334)
T ss_pred ccCcceeeeecCchhhhhhhhcccchhhhhhhhhhhhh--hhh--hhhheeeeEEecccchhhhccc----hHHHhhhhh
Confidence 5899999999999999999999 999999999888777 566 4889999999999888888766 679999999
Q ss_pred CCCcc-EEeeec-cCcceeEEEEecceeEEE---ecCeEEEEEcccceeeeeEeccCCCceeeeeecCCCccEEEecCCC
Q 018248 83 DHENR-YLGELS-FRSEVKNVRLRRDRIVVV---LNQKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAGPMVMACPGLL 157 (359)
Q Consensus 83 ~~~~~-~~~~~~-~~~~v~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~ 157 (359)
++..+ +..++. |.+.|..+.|....+.++ .|++|++||.++++.++.+.. ..++..+.++++++.+.++.
T Consensus 129 ln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~~-~s~VtSlEvs~dG~ilTia~---- 203 (334)
T KOG0278|consen 129 LNRPKAPPKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLEF-NSPVTSLEVSQDGRILTIAY---- 203 (334)
T ss_pred ccCCCCCchhhcCCCCcceeEEEeccCceEEeeccCCceEEEEeccCcEEEEEec-CCCCcceeeccCCCEEEEec----
Confidence 87653 455565 999999999977655554 899999999999999999975 45688999999998755554
Q ss_pred CeeEEEEecCC-eeeEEeecccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcEEEEeecCCCCcceEEEEecCCCC
Q 018248 158 KGQVRVEDYGT-KKSKYITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSNAQ 236 (359)
Q Consensus 158 d~~v~~~~~~~-~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~ 236 (359)
.+.|.+|+... ..++.+. -...|.+..++|+...+++|++|.. ++.||..+++.+..+..+ |.++|.++.|+|||.
T Consensus 204 gssV~Fwdaksf~~lKs~k-~P~nV~SASL~P~k~~fVaGged~~-~~kfDy~TgeEi~~~nkg-h~gpVhcVrFSPdGE 280 (334)
T KOG0278|consen 204 GSSVKFWDAKSFGLLKSYK-MPCNVESASLHPKKEFFVAGGEDFK-VYKFDYNTGEEIGSYNKG-HFGPVHCVRFSPDGE 280 (334)
T ss_pred CceeEEeccccccceeecc-CccccccccccCCCceEEecCcceE-EEEEeccCCceeeecccC-CCCceEEEEECCCCc
Confidence 45788888765 4444443 3567899999999999999999999 999999999999887333 779999999999999
Q ss_pred EEEEEcCCCcEEEEEccCCCC
Q 018248 237 WLAASSDKGTVHVFGLKVDSG 257 (359)
Q Consensus 237 ~l~~~~~dg~i~iw~~~~~~~ 257 (359)
..++|+.||+|++|.+..++.
T Consensus 281 ~yAsGSEDGTirlWQt~~~~~ 301 (334)
T KOG0278|consen 281 LYASGSEDGTIRLWQTTPGKT 301 (334)
T ss_pred eeeccCCCceEEEEEecCCCc
Confidence 999999999999999987763
No 82
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=7.5e-27 Score=179.39 Aligned_cols=281 Identities=17% Similarity=0.215 Sum_probs=205.3
Q ss_pred CCCCceEEEEEccCCCEEEEec-CCceEEEEcCCCccee----eeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeE
Q 018248 4 PDPITIHHLALNQDHGCFATGT-ETGFRVYLSDPYKPIM----RRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKV 78 (359)
Q Consensus 4 ~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~----~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i 78 (359)
.|...|++|+|+.||++||+++ |+.|+||++..+.... ++.++ -+..+.+.|+|+...+++... ...++
T Consensus 84 gH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve---~dhpT~V~FapDc~s~vv~~~---~g~~l 157 (420)
T KOG2096|consen 84 GHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVE---YDHPTRVVFAPDCKSVVVSVK---RGNKL 157 (420)
T ss_pred ccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhcccc---CCCceEEEECCCcceEEEEEc---cCCEE
Confidence 5899999999999999999999 9999999998765432 23333 334567788898877766554 34789
Q ss_pred EEEECCCc---cEEe--------eec--cCcceeEEEEecceeEEE---ecCeEEEEEcccceeeeeEeccCCCceeeee
Q 018248 79 MIWDDHEN---RYLG--------ELS--FRSEVKNVRLRRDRIVVV---LNQKVYVYNFTDLKLVDQIETVVNPTGLCDV 142 (359)
Q Consensus 79 ~iwd~~~~---~~~~--------~~~--~~~~v~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~ 142 (359)
++|..... .... .+. |...+..+-...++.+++ .|..|.+|+++ |+.+..+......-...++
T Consensus 158 ~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aav 236 (420)
T KOG2096|consen 158 CVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAV 236 (420)
T ss_pred EEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cceeeeeccccccccceee
Confidence 99975332 1111 111 455666677777788887 89999999997 9999998877766778899
Q ss_pred ecCCCccEEEecCCCCeeEEEEec----CC-----eeeEEeecccccccEEEEccCCcEEEEEeCCCCeEEEEEcCC---
Q 018248 143 SQNAGPMVMACPGLLKGQVRVEDY----GT-----KKSKYITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMD--- 210 (359)
Q Consensus 143 ~~~~~~~~l~~~g~~d~~v~~~~~----~~-----~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~--- 210 (359)
+|++.. ++++|. .-.|++|.. ++ ..+..+.+|...|..++|+|+.+.+++.+.||. ++|||+.-
T Consensus 237 SP~GRF--ia~~gF-TpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~-wriwdtdVrY~ 312 (420)
T KOG2096|consen 237 SPDGRF--IAVSGF-TPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGK-WRIWDTDVRYE 312 (420)
T ss_pred CCCCcE--EEEecC-CCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCc-EEEeeccceEe
Confidence 999875 665453 556888754 22 335567899999999999999999999999999 99999742
Q ss_pred ----CcEEEEeec--CCCCcceEEEEecCCCCEEEEEcCCCcEEEEEccCCCCCCCCCccccCCCCCccCCCCCceeeee
Q 018248 211 ----GSLLQEMRR--GAERAEIYSLAFSSNAQWLAASSDKGTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSAISSFR 284 (359)
Q Consensus 211 ----~~~~~~~~~--~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (359)
.+.+++... +...+....++++|+|+.|+.+. ...++++..+.++..+.
T Consensus 313 ~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~-gs~l~~~~se~g~~~~~------------------------ 367 (420)
T KOG2096|consen 313 AGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSF-GSDLKVFASEDGKDYPE------------------------ 367 (420)
T ss_pred cCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeec-CCceEEEEcccCccchh------------------------
Confidence 122222211 11223455899999999998765 44699999998774320
Q ss_pred EeeeecceEEecccceeEEeecCCcEEEeeecccCCEEEEEecCCeEEEEEeCC
Q 018248 285 FIRGVLPKYFSSKWSMAQFRLPENVQYLVGFGRQNNTIVIVGLDGSYYKCEFDP 338 (359)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~ 338 (359)
+ -+.+.+.|.+++|+++|+++++++ |..++++.-.+
T Consensus 368 ---------~--------e~~h~~~Is~is~~~~g~~~atcG-dr~vrv~~ntp 403 (420)
T KOG2096|consen 368 ---------L--------EDIHSTTISSISYSSDGKYIATCG-DRYVRVIRNTP 403 (420)
T ss_pred ---------H--------HHhhcCceeeEEecCCCcEEeeec-ceeeeeecCCC
Confidence 0 234667899999999999998754 66788886555
No 83
>PTZ00420 coronin; Provisional
Probab=99.96 E-value=5.8e-26 Score=197.65 Aligned_cols=220 Identities=8% Similarity=0.066 Sum_probs=166.2
Q ss_pred CCCeEEEEECCCccEEeeec-cCcceeEEEEecc-eeEEE---ecCeEEEEEcccce--------eeeeEeccCCCceee
Q 018248 74 QSNKVMIWDDHENRYLGELS-FRSEVKNVRLRRD-RIVVV---LNQKVYVYNFTDLK--------LVDQIETVVNPTGLC 140 (359)
Q Consensus 74 ~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~-~~~~~---~d~~i~i~d~~~~~--------~~~~~~~~~~~~~~~ 140 (359)
.++.|++|+......+..+. |...|.+++|+|+ +.+++ .|+.|++||+.++. .+..+.+|...+..+
T Consensus 52 ~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sV 131 (568)
T PTZ00420 52 LIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISII 131 (568)
T ss_pred ceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEE
Confidence 57899999988877787887 9999999999996 56666 89999999996532 334567888899999
Q ss_pred eeecCCCccEEEecCCCCeeEEEEecCCee-eEEeecccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcEEEEeec
Q 018248 141 DVSQNAGPMVMACPGLLKGQVRVEDYGTKK-SKYITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRR 219 (359)
Q Consensus 141 ~~~~~~~~~~l~~~g~~d~~v~~~~~~~~~-~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~~~~~~~ 219 (359)
+|+|++.. ++++ ++.|+.|++|+..... ...+. |...|.+++|+|+|.+|++++.|+. |+|||+++++.+.++..
T Consensus 132 af~P~g~~-iLaS-gS~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~lLat~s~D~~-IrIwD~Rsg~~i~tl~g 207 (568)
T PTZ00420 132 DWNPMNYY-IMCS-SGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGNLLSGTCVGKH-MHIIDPRKQEIASSFHI 207 (568)
T ss_pred EECCCCCe-EEEE-EeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCCEEEEEecCCE-EEEEECCCCcEEEEEec
Confidence 99998765 3344 5679999999987643 33443 6678999999999999999999999 99999999999988876
Q ss_pred CCCCcceE-----EEEecCCCCEEEEEcCCC----cEEEEEccCCCCCCCCCccccCCCCCccCCCCCceeeeeEeeeec
Q 018248 220 GAERAEIY-----SLAFSSNAQWLAASSDKG----TVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSAISSFRFIRGVL 290 (359)
Q Consensus 220 ~~~~~~i~-----~~~~s~~~~~l~~~~~dg----~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (359)
|.+.+. ...|++++.+|++++.|+ +|+|||++..... +.
T Consensus 208 --H~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~p------------------------l~------ 255 (568)
T PTZ00420 208 --HDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSA------------------------LV------ 255 (568)
T ss_pred --ccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCc------------------------eE------
Confidence 444432 234568999999888764 7999999864311 00
Q ss_pred ceEEecccceeEEeecCCcEEEeeecccCCEEEEEecCCeEEEEEeCC
Q 018248 291 PKYFSSKWSMAQFRLPENVQYLVGFGRQNNTIVIVGLDGSYYKCEFDP 338 (359)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~ 338 (359)
... +....+.+.-....+++.++++|+.|+.|++|++..
T Consensus 256 --~~~-------ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~ 294 (568)
T PTZ00420 256 --TMS-------IDNASAPLIPHYDESTGLIYLIGKGDGNCRYYQHSL 294 (568)
T ss_pred --EEE-------ecCCccceEEeeeCCCCCEEEEEECCCeEEEEEccC
Confidence 000 111122333333455688899999999999999975
No 84
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.96 E-value=5.3e-28 Score=186.30 Aligned_cols=243 Identities=14% Similarity=0.191 Sum_probs=204.4
Q ss_pred CCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEECCCccEEeeec---------cCcceeEEEEecceeEEE---ecCe
Q 018248 48 NPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDDHENRYLGELS---------FRSEVKNVRLRRDRIVVV---LNQK 115 (359)
Q Consensus 48 ~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~---------~~~~v~~~~~~~~~~~~~---~d~~ 115 (359)
|....+.+..|+|++++++..+ .||.|.+||..+|+....++ +..+|.|+.|+.|...++ .||.
T Consensus 211 g~KSh~EcA~FSPDgqyLvsgS----vDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGk 286 (508)
T KOG0275|consen 211 GQKSHVECARFSPDGQYLVSGS----VDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGK 286 (508)
T ss_pred ccccchhheeeCCCCceEeecc----ccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCc
Confidence 5567778889999999988777 79999999999997766553 567899999999999998 8999
Q ss_pred EEEEEcccceeeeeEe-ccCCCceeeeeecCCCccEEEecCCCCeeEEE-EecCCeeeEEeecccccccEEEEccCCcEE
Q 018248 116 VYVYNFTDLKLVDQIE-TVVNPTGLCDVSQNAGPMVMACPGLLKGQVRV-EDYGTKKSKYITAHASRIASIAMTLDGRFV 193 (359)
Q Consensus 116 i~i~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~g~~d~~v~~-~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l 193 (359)
|++|.+++|++++.+. .|...+.++.|+.++.. +.+ ++.|.++++ -...++.++.+++|...|+...|++||..+
T Consensus 287 IKvWri~tG~ClRrFdrAHtkGvt~l~FSrD~Sq--iLS-~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~i 363 (508)
T KOG0275|consen 287 IKVWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQ--ILS-ASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHI 363 (508)
T ss_pred EEEEEEecchHHHHhhhhhccCeeEEEEccCcch--hhc-ccccceEEEeccccchhHHHhcCccccccceEEcCCCCeE
Confidence 9999999999999996 78889999999999887 444 567999999 566779999999999999999999999999
Q ss_pred EEEeCCCCeEEEEEcCCCcEEEEeecCCCCcceEEEEecCC-CCEEEEEcCCCcEEEEEccCCCCCCCCCccccCCCCCc
Q 018248 194 ATASSKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSN-AQWLAASSDKGTVHVFGLKVDSGSPGTSKLHSASEPNL 272 (359)
Q Consensus 194 ~~~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~-~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~ 272 (359)
++++.||+ |++|+.++.+++.+|+......+|+++..-|. ...++.+...++|+|.++...-.
T Consensus 364 isaSsDgt-vkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qGQvV--------------- 427 (508)
T KOG0275|consen 364 ISASSDGT-VKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQGQVV--------------- 427 (508)
T ss_pred EEecCCcc-EEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccceEE---------------
Confidence 99999999 99999999999999987766778999888874 45788888999999998875431
Q ss_pred cCCCCCceeeeeEeeeecceEEecccceeEEeecCCcEEEeeecccCCEEEEEecCCeEEEEEeCC
Q 018248 273 SSKNSSAISSFRFIRGVLPKYFSSKWSMAQFRLPENVQYLVGFGRQNNTIVIVGLDGSYYKCEFDP 338 (359)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~ 338 (359)
+.|.+. +-..+.-..++.||.|.++++.++|+.+|.|.+-.
T Consensus 428 -------------------rsfsSG------kREgGdFi~~~lSpkGewiYcigED~vlYCF~~~s 468 (508)
T KOG0275|consen 428 -------------------RSFSSG------KREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLS 468 (508)
T ss_pred -------------------eeeccC------CccCCceEEEEecCCCcEEEEEccCcEEEEEEeec
Confidence 112211 11123445678999999999999999999998866
No 85
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=1.6e-26 Score=177.15 Aligned_cols=239 Identities=13% Similarity=0.190 Sum_probs=190.2
Q ss_pred CCCCCCceEEEEEccCCCEEEEec-CCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCC--EEEEEecCCCCCCeE
Q 018248 2 NQPDPITIHHLALNQDHGCFATGT-ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSN--IICLVNSGPHQSNKV 78 (359)
Q Consensus 2 ~~~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~--~~~~~~~~~~~d~~i 78 (359)
.+.|..+|++++.+ |.++|+|+ |.+|+|||+....+.- .+- .|.+.++++.|.+.-. .++.++ .||.|
T Consensus 39 ~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~~qlg--~ll-~HagsitaL~F~~~~S~shLlS~s----dDG~i 109 (362)
T KOG0294|consen 39 FSAHAGSITALAVS--GPYVASGSSDETIHIYDMRKRKQLG--ILL-SHAGSITALKFYPPLSKSHLLSGS----DDGHI 109 (362)
T ss_pred ccccccceeEEEec--ceeEeccCCCCcEEEEeccchhhhc--cee-ccccceEEEEecCCcchhheeeec----CCCcE
Confidence 36799999999975 88999999 9999999998654442 222 5899999999887654 444444 79999
Q ss_pred EEEECCCccEEeeec-cCcceeEEEEecceeEEE---ecCeEEEEEcccceeeeeEeccCCCceeeeeecCCCccEEEec
Q 018248 79 MIWDDHENRYLGELS-FRSEVKNVRLRRDRIVVV---LNQKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAGPMVMACP 154 (359)
Q Consensus 79 ~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 154 (359)
.+|+...-+++..++ |.+.|+.++.+|.+++.+ .|+.++.||+-+|+....+.... ....+.|+|.++.+++..
T Consensus 110 ~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~-~at~v~w~~~Gd~F~v~~- 187 (362)
T KOG0294|consen 110 IIWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLKN-KATLVSWSPQGDHFVVSG- 187 (362)
T ss_pred EEEEcCCeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeeccCC-cceeeEEcCCCCEEEEEe-
Confidence 999999999999998 999999999999998877 89999999998887766655433 335689999998755543
Q ss_pred CCCCeeEEEEecCCeeeEEeecccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcEEEEeecCCCCcceEEEEe--c
Q 018248 155 GLLKGQVRVEDYGTKKSKYITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAF--S 232 (359)
Q Consensus 155 g~~d~~v~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~--s 232 (359)
...|-+|..+...+.........+.++.|- ++..|++|.+++. |.+||..+..+...+.+ |+..|-++.+ .
T Consensus 188 ---~~~i~i~q~d~A~v~~~i~~~~r~l~~~~l-~~~~L~vG~d~~~-i~~~D~ds~~~~~~~~A--H~~RVK~i~~~~~ 260 (362)
T KOG0294|consen 188 ---RNKIDIYQLDNASVFREIENPKRILCATFL-DGSELLVGGDNEW-ISLKDTDSDTPLTEFLA--HENRVKDIASYTN 260 (362)
T ss_pred ---ccEEEEEecccHhHhhhhhccccceeeeec-CCceEEEecCCce-EEEeccCCCccceeeec--chhheeeeEEEec
Confidence 446777777664443333333556777774 5678899999999 99999999999988987 8889999884 4
Q ss_pred CCCCEEEEEcCCCcEEEEEccCCCCC
Q 018248 233 SNAQWLAASSDKGTVHVFGLKVDSGS 258 (359)
Q Consensus 233 ~~~~~l~~~~~dg~i~iw~~~~~~~~ 258 (359)
|++.+|++++.||.|+|||++.....
T Consensus 261 ~~~~~lvTaSSDG~I~vWd~~~~~k~ 286 (362)
T KOG0294|consen 261 PEHEYLVTASSDGFIKVWDIDMETKK 286 (362)
T ss_pred CCceEEEEeccCceEEEEEccccccC
Confidence 67889999999999999999987543
No 86
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.96 E-value=6.1e-26 Score=173.55 Aligned_cols=269 Identities=11% Similarity=0.089 Sum_probs=199.5
Q ss_pred CCCCCCCceEEEEEccCCCEEEEec-CCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEE
Q 018248 1 MNQPDPITIHHLALNQDHGCFATGT-ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVM 79 (359)
Q Consensus 1 m~~~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~ 79 (359)
+.++..+.|++|.|+|.+..|++++ ||++++|+....... ..+ .|..++...+|.. ....++.+ -||.|+
T Consensus 8 l~npP~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~--~~~--~~~~plL~c~F~d-~~~~~~G~----~dg~vr 78 (323)
T KOG1036|consen 8 LENPPEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLK--LKF--KHGAPLLDCAFAD-ESTIVTGG----LDGQVR 78 (323)
T ss_pred cCCCChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhh--hhe--ecCCceeeeeccC-CceEEEec----cCceEE
Confidence 3567889999999999999998888 999999999876444 444 3788888877764 33444444 689999
Q ss_pred EEECCCccEEeeeccCcceeEEEEecc-eeEEE--ecCeEEEEEcccceeeeeEeccCCCceeeeeecCCCccEEEecCC
Q 018248 80 IWDDHENRYLGELSFRSEVKNVRLRRD-RIVVV--LNQKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAGPMVMACPGL 156 (359)
Q Consensus 80 iwd~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~--~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~ 156 (359)
.+|+.+++....-.|...|.++..++. +.+++ .|++|++||.+.......+.... .+.+++-.++. |+. |.
T Consensus 79 ~~Dln~~~~~~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~~k---kVy~~~v~g~~--LvV-g~ 152 (323)
T KOG1036|consen 79 RYDLNTGNEDQIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQGK---KVYCMDVSGNR--LVV-GT 152 (323)
T ss_pred EEEecCCcceeeccCCCceEEEEeeccCCeEEEcccCccEEEEeccccccccccccCc---eEEEEeccCCE--EEE-ee
Confidence 999999988888889999999999975 45555 99999999998755555554333 34455556665 333 44
Q ss_pred CCeeEEEEecCCeeeE-E--eecccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCC----cEEEEeecCCC-------
Q 018248 157 LKGQVRVEDYGTKKSK-Y--ITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDG----SLLQEMRRGAE------- 222 (359)
Q Consensus 157 ~d~~v~~~~~~~~~~~-~--~~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~----~~~~~~~~~~~------- 222 (359)
.+..+.+|+.+..... . -..-+-.+.|+++-|++.-.++++-||. |.+=.+... +....|+.|..
T Consensus 153 ~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGR-VavE~~d~s~~~~skkyaFkCHr~~~~~~~~ 231 (323)
T KOG1036|consen 153 SDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGR-VAVEYFDDSEEAQSKKYAFKCHRLSEKDTEI 231 (323)
T ss_pred cCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecce-EEEEccCCchHHhhhceeEEeeecccCCceE
Confidence 6889999887752211 1 1234567899999999888899999998 877555443 33344443211
Q ss_pred CcceEEEEecCCCCEEEEEcCCCcEEEEEccCCCCCCCCCccccCCCCCccCCCCCceeeeeEeeeecceEEecccceeE
Q 018248 223 RAEIYSLAFSSNAQWLAASSDKGTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSAISSFRFIRGVLPKYFSSKWSMAQ 302 (359)
Q Consensus 223 ~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (359)
--+|++++|+|-...|+||+.||.|.+||+.+.+... .
T Consensus 232 ~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~-----------------------------q------------- 269 (323)
T KOG1036|consen 232 IYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLK-----------------------------Q------------- 269 (323)
T ss_pred EEEeceeEeccccceEEecCCCceEEEccCcchhhhh-----------------------------h-------------
Confidence 1279999999999999999999999999999887431 0
Q ss_pred EeecCCcEEEeeecccCCEEEEEec
Q 018248 303 FRLPENVQYLVGFGRQNNTIVIVGL 327 (359)
Q Consensus 303 ~~~~~~~v~~~~~s~~~~~l~~~~~ 327 (359)
+..-...|.+++|+.||..||+++.
T Consensus 270 ~~~~~~SI~slsfs~dG~~LAia~s 294 (323)
T KOG1036|consen 270 LAKYETSISSLSFSMDGSLLAIASS 294 (323)
T ss_pred ccCCCCceEEEEeccCCCeEEEEec
Confidence 1111246889999999999999986
No 87
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.96 E-value=2.1e-26 Score=180.61 Aligned_cols=239 Identities=13% Similarity=0.181 Sum_probs=191.0
Q ss_pred CCCCceEEEEEccCCC---EEEEec-CCceEEEEcCCCcceeeeec-ccCCCCceeEEEEeccCCEEEEEecCCCCCCeE
Q 018248 4 PDPITIHHLALNQDHG---CFATGT-ETGFRVYLSDPYKPIMRRDF-DRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKV 78 (359)
Q Consensus 4 ~h~~~v~~~~~s~~g~---~l~~~~-d~~i~iw~~~~~~~~~~~~~-~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i 78 (359)
.|.++|.+++|-.... .|++++ |.++++|..+.++....... ..||...|.+++...++..++.++ .|..|
T Consensus 142 Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS----~D~~l 217 (423)
T KOG0313|consen 142 GHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGS----WDTML 217 (423)
T ss_pred cCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhHHhHhcccccceeEEEecCCCCeEEeec----cccee
Confidence 5889999888864333 488888 99999999987664432211 139999999999988888877777 79999
Q ss_pred EEEECCC-------------------------ccEEeeec-cCcceeEEEEecceeEEE--ecCeEEEEEcccceeeeeE
Q 018248 79 MIWDDHE-------------------------NRYLGELS-FRSEVKNVRLRRDRIVVV--LNQKVYVYNFTDLKLVDQI 130 (359)
Q Consensus 79 ~iwd~~~-------------------------~~~~~~~~-~~~~v~~~~~~~~~~~~~--~d~~i~i~d~~~~~~~~~~ 130 (359)
.||+..+ +.++..+. |.++|.++.|++.+..+. .|.+|+.||+.+++....+
T Consensus 218 kiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d~~v~yS~SwDHTIk~WDletg~~~~~~ 297 (423)
T KOG0313|consen 218 KIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSDATVIYSVSWDHTIKVWDLETGGLKSTL 297 (423)
T ss_pred eecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcCCCceEeecccceEEEEEeecccceeee
Confidence 9999321 13444555 889999999998655544 9999999999999998888
Q ss_pred eccCCCceeeeeecCCCccEEEecCCCCeeEEEEecCC----eeeEEeecccccccEEEEccCCc-EEEEEeCCCCeEEE
Q 018248 131 ETVVNPTGLCDVSQNAGPMVMACPGLLKGQVRVEDYGT----KKSKYITAHASRIASIAMTLDGR-FVATASSKGTLIRV 205 (359)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~v~~~~~~~----~~~~~~~~~~~~i~~~~~s~~~~-~l~~~~~dg~~i~i 205 (359)
.+. ....++..+|..+ +|++ |+.|..+++|+.+. -..+.+.+|++.|.++.|+|... .|++++.|++ +++
T Consensus 298 ~~~-ksl~~i~~~~~~~--Ll~~-gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t-~kl 372 (423)
T KOG0313|consen 298 TTN-KSLNCISYSPLSK--LLAS-GSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNT-VKL 372 (423)
T ss_pred ecC-cceeEeecccccc--eeee-cCCCCceeecCCCCCCCceeEEeeecchhhhhheecCCCCceEEEEEecCCe-EEE
Confidence 754 3456677777544 4676 88899999988765 34567889999999999999665 6789999999 999
Q ss_pred EEcCCCc-EEEEeecCCCCcceEEEEecCCCCEEEEEcCCCcEEEEEccC
Q 018248 206 FNTMDGS-LLQEMRRGAERAEIYSLAFSSNAQWLAASSDKGTVHVFGLKV 254 (359)
Q Consensus 206 wd~~~~~-~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~ 254 (359)
||+++.+ ++..+.+ |...|.++.|. ++..|++|+.|.+|+|+.-..
T Consensus 373 WDvRS~k~plydI~~--h~DKvl~vdW~-~~~~IvSGGaD~~l~i~~~~~ 419 (423)
T KOG0313|consen 373 WDVRSTKAPLYDIAG--HNDKVLSVDWN-EGGLIVSGGADNKLRIFKGSP 419 (423)
T ss_pred EEeccCCCcceeecc--CCceEEEEecc-CCceEEeccCcceEEEecccc
Confidence 9999887 8989987 77899999997 577999999999999987543
No 88
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=2.6e-26 Score=184.45 Aligned_cols=284 Identities=12% Similarity=0.151 Sum_probs=213.8
Q ss_pred CCCCCceEEEEEccCCCEEEEec-CCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEE
Q 018248 3 QPDPITIHHLALNQDHGCFATGT-ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIW 81 (359)
Q Consensus 3 ~~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iw 81 (359)
.+..+.|++|.|+|....|++|+ |+.++||.++.......+.+. -...++...+|.+++...++.++ ....++.|
T Consensus 210 ~ps~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~-l~~fPi~~a~f~p~G~~~i~~s~---rrky~ysy 285 (514)
T KOG2055|consen 210 HPSHGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIH-LEKFPIQKAEFAPNGHSVIFTSG---RRKYLYSY 285 (514)
T ss_pred CcCcCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeee-eccCccceeeecCCCceEEEecc---cceEEEEe
Confidence 35578999999999999999999 999999999854433333321 12678899999999986666665 45889999
Q ss_pred ECCCccEEeeec----cCcceeEEEEecceeEEE---ecCeEEEEEcccceeeeeEeccCCCceeeeeecCCCccEEEec
Q 018248 82 DDHENRYLGELS----FRSEVKNVRLRRDRIVVV---LNQKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAGPMVMACP 154 (359)
Q Consensus 82 d~~~~~~~~~~~----~~~~v~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 154 (359)
|+.+.+....-. ....+.....++++++++ ..|.|.+....+++.+..++. .+.+..++|+.+++. ++++
T Consensus 286 Dle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~Ki-eG~v~~~~fsSdsk~-l~~~- 362 (514)
T KOG2055|consen 286 DLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKI-EGVVSDFTFSSDSKE-LLAS- 362 (514)
T ss_pred eccccccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheeee-ccEEeeEEEecCCcE-EEEE-
Confidence 998876554332 234577788999999988 789999999999999988875 455778889888864 3443
Q ss_pred CCCCeeEEEEecCCee-eEEeecccccc--cEEEEccCCcEEEEEeCCCCeEEEEEcCC------CcEEEEeecCCCCcc
Q 018248 155 GLLKGQVRVEDYGTKK-SKYITAHASRI--ASIAMTLDGRFVATASSKGTLIRVFNTMD------GSLLQEMRRGAERAE 225 (359)
Q Consensus 155 g~~d~~v~~~~~~~~~-~~~~~~~~~~i--~~~~~s~~~~~l~~~~~dg~~i~iwd~~~------~~~~~~~~~~~~~~~ 225 (359)
| .+|.|.+|+.+... ++.+. ..+.| ++++.++++.+||+|+..|. |.|||..+ .+++..+.. -...
T Consensus 363 ~-~~GeV~v~nl~~~~~~~rf~-D~G~v~gts~~~S~ng~ylA~GS~~Gi-VNIYd~~s~~~s~~PkPik~~dN--Ltt~ 437 (514)
T KOG2055|consen 363 G-GTGEVYVWNLRQNSCLHRFV-DDGSVHGTSLCISLNGSYLATGSDSGI-VNIYDGNSCFASTNPKPIKTVDN--LTTA 437 (514)
T ss_pred c-CCceEEEEecCCcceEEEEe-ecCccceeeeeecCCCceEEeccCcce-EEEeccchhhccCCCCchhhhhh--hhee
Confidence 3 48899999888754 44443 33444 56777899999999999999 99999653 345555543 3468
Q ss_pred eEEEEecCCCCEEEEEcC--CCcEEEEEccCCCCCCCCCccccCCCCCccCCCCCceeeeeEeeeecceEEecccceeEE
Q 018248 226 IYSLAFSSNAQWLAASSD--KGTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSAISSFRFIRGVLPKYFSSKWSMAQF 303 (359)
Q Consensus 226 i~~~~~s~~~~~l~~~~~--dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (359)
|++++|+||+++||.++. +..+++-.+.+.... +.|.+ .
T Consensus 438 Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVF----------------------------sNfP~-----------~ 478 (514)
T KOG2055|consen 438 ITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVF----------------------------SNFPT-----------S 478 (514)
T ss_pred eeeeeeCcchhhhhhhhhccccceEEEeccceeee----------------------------ccCCC-----------C
Confidence 999999999999988874 567888888775511 11100 1
Q ss_pred eecCCcEEEeeecccCCEEEEEecCCeEEEEEeC
Q 018248 304 RLPENVQYLVGFGRQNNTIVIVGLDGSYYKCEFD 337 (359)
Q Consensus 304 ~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~ 337 (359)
..+-+.+++++|||.+.+||.|.++|.+.+|++.
T Consensus 479 n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 479 NTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred CCcccceEEEEecCCCceEEeecCCCceeeEeec
Confidence 1233788999999999999999999999999874
No 89
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.96 E-value=4.3e-26 Score=170.41 Aligned_cols=236 Identities=19% Similarity=0.261 Sum_probs=200.2
Q ss_pred CCCCCceEEEEEcc-CCCEEEEec-CCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEE
Q 018248 3 QPDPITIHHLALNQ-DHGCFATGT-ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMI 80 (359)
Q Consensus 3 ~~h~~~v~~~~~s~-~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~i 80 (359)
..|.+.|-.++|+| ....|++++ |..|++||...++....... .++-..+.|+|+++++++.. .|..|.+
T Consensus 61 ~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~~k~~~~i~~----~~eni~i~wsp~g~~~~~~~----kdD~it~ 132 (313)
T KOG1407|consen 61 RGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRSGKCTARIET----KGENINITWSPDGEYIAVGN----KDDRITF 132 (313)
T ss_pred cCCCcchhhheeCCCCCcceEEecCCceEEEEEeccCcEEEEeec----cCcceEEEEcCCCCEEEEec----CcccEEE
Confidence 35788899999998 456778888 99999999998877766554 45555678999999999888 7899999
Q ss_pred EECCCccEEeeeccCcceeEEEEecceeEEE---ecCeEEEEEcccceeeeeEeccCCCceeeeeecCCCccEEEecCCC
Q 018248 81 WDDHENRYLGELSFRSEVKNVRLRRDRIVVV---LNQKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAGPMVMACPGLL 157 (359)
Q Consensus 81 wd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~ 157 (359)
.|.++.+.....+....+..+.|+.++.+++ ..|.|.|......+++..++.|.....++.|+|++++ +|+ |+.
T Consensus 133 id~r~~~~~~~~~~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~Gry--fA~-GsA 209 (313)
T KOG1407|consen 133 IDARTYKIVNEEQFKFEVNEISWNNSNDLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRY--FAT-GSA 209 (313)
T ss_pred EEecccceeehhcccceeeeeeecCCCCEEEEecCCceEEEEeccccccccccccCCcceEEEEECCCCce--Eee-ccc
Confidence 9999999998888888899999987665555 5589999999999999999999877667777777765 887 888
Q ss_pred CeeEEEEecCC-eeeEEeecccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcEEEEeecCCCCcceEEEEecCCCC
Q 018248 158 KGQVRVEDYGT-KKSKYITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSNAQ 236 (359)
Q Consensus 158 d~~v~~~~~~~-~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~ 236 (359)
|..+.+|+.+. -+++.+..+.-+|..+.||.||++||+|++|.. |-|=++++|..+.+++ +.++-..++|+|...
T Consensus 210 DAlvSLWD~~ELiC~R~isRldwpVRTlSFS~dg~~lASaSEDh~-IDIA~vetGd~~~eI~---~~~~t~tVAWHPk~~ 285 (313)
T KOG1407|consen 210 DALVSLWDVDELICERCISRLDWPVRTLSFSHDGRMLASASEDHF-IDIAEVETGDRVWEIP---CEGPTFTVAWHPKRP 285 (313)
T ss_pred cceeeccChhHhhhheeeccccCceEEEEeccCcceeeccCccce-EEeEecccCCeEEEee---ccCCceeEEecCCCc
Confidence 99999998765 677888889999999999999999999999999 9999999999999998 678999999999999
Q ss_pred EEEEEcCC---------CcEEEEEcc
Q 018248 237 WLAASSDK---------GTVHVFGLK 253 (359)
Q Consensus 237 ~l~~~~~d---------g~i~iw~~~ 253 (359)
+||-+++| |.|++|-+.
T Consensus 286 LLAyA~ddk~~d~~reag~vKiFG~~ 311 (313)
T KOG1407|consen 286 LLAYACDDKDGDSNREAGTVKIFGLS 311 (313)
T ss_pred eeeEEecCCCCccccccceeEEecCC
Confidence 99988754 456666554
No 90
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.96 E-value=7.6e-27 Score=205.84 Aligned_cols=245 Identities=17% Similarity=0.193 Sum_probs=196.8
Q ss_pred CCCCCceEEEEEccCCCEEEEec-CCceEEEEcCC------C----c------ceeeeecccCCCCceeEEEEeccCCEE
Q 018248 3 QPDPITIHHLALNQDHGCFATGT-ETGFRVYLSDP------Y----K------PIMRRDFDRNPRGGTQLVSMLFRSNII 65 (359)
Q Consensus 3 ~~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~------~----~------~~~~~~~~~~h~~~v~~~~~~~~~~~~ 65 (359)
..|.+.|.|+.|+|||++||+|+ |+.|.||.... + . ......+. +|...|..++|+|++.++
T Consensus 66 ~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~-~H~~DV~Dv~Wsp~~~~l 144 (942)
T KOG0973|consen 66 DDHDGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILR-GHDSDVLDVNWSPDDSLL 144 (942)
T ss_pred ccccCceeEEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEe-cCCCccceeccCCCccEE
Confidence 36899999999999999999999 88899999873 0 0 01223444 899999999999988888
Q ss_pred EEEecCCCCCCeEEEEECCCccEEeeec-cCcceeEEEEecceeEEE---ecCeEEEEEcccceeeeeEeccCC------
Q 018248 66 CLVNSGPHQSNKVMIWDDHENRYLGELS-FRSEVKNVRLRRDRIVVV---LNQKVYVYNFTDLKLVDQIETVVN------ 135 (359)
Q Consensus 66 ~~~~~~~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~~~~~------ 135 (359)
+.++ .|++|.+|+..+.+.+..++ |...|..+.|.|-|++++ .|++|++|++.+-...+.+..+..
T Consensus 145 vS~s----~DnsViiwn~~tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T 220 (942)
T KOG0973|consen 145 VSVS----LDNSVIIWNAKTFELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTT 220 (942)
T ss_pred EEec----ccceEEEEccccceeeeeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcc
Confidence 8888 79999999999999999998 999999999999999999 899999999877666666654332
Q ss_pred CceeeeeecCCCccEEEecCCC---CeeEEEEecCC-eeeEEeecccccccEEEEccC-----Cc------------EEE
Q 018248 136 PTGLCDVSQNAGPMVMACPGLL---KGQVRVEDYGT-KKSKYITAHASRIASIAMTLD-----GR------------FVA 194 (359)
Q Consensus 136 ~~~~~~~~~~~~~~~l~~~g~~---d~~v~~~~~~~-~~~~~~~~~~~~i~~~~~s~~-----~~------------~l~ 194 (359)
...-+.|+|+|+. |++.... -..+.|-.+.+ +.-..+.+|.+++.+++|+|. .+ .+|
T Consensus 221 ~f~RlSWSPDG~~--las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~A 298 (942)
T KOG0973|consen 221 FFLRLSWSPDGHH--LASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAA 298 (942)
T ss_pred eeeecccCCCcCe--ecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEE
Confidence 2345778888876 6553222 23455544433 556778899999999999981 11 688
Q ss_pred EEeCCCCeEEEEEcCCCcEEEEeecCCCCcceEEEEecCCCCEEEEEcCCCcEEEEEccCCC
Q 018248 195 TASSKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSNAQWLAASSDKGTVHVFGLKVDS 256 (359)
Q Consensus 195 ~~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~ 256 (359)
+|+.|++ |.||.....+++..... .....|.+++|+|||..|++++.||+|.+..++..+
T Consensus 299 vgSqDrS-lSVW~T~~~RPl~vi~~-lf~~SI~DmsWspdG~~LfacS~DGtV~~i~Fee~E 358 (942)
T KOG0973|consen 299 VGSQDRS-LSVWNTALPRPLFVIHN-LFNKSIVDMSWSPDGFSLFACSLDGTVALIHFEEKE 358 (942)
T ss_pred EecCCcc-EEEEecCCCCchhhhhh-hhcCceeeeeEcCCCCeEEEEecCCeEEEEEcchHH
Confidence 9999999 99999877777765542 245689999999999999999999999999997654
No 91
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=3.9e-25 Score=169.89 Aligned_cols=241 Identities=13% Similarity=0.139 Sum_probs=188.4
Q ss_pred CCceeEEEEeccCCEEEEEecCCCCCCeEEEEECCCccEEeeec-cCcceeEEEEeccee-EEE----ecCeEEEEEccc
Q 018248 50 RGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDDHENRYLGELS-FRSEVKNVRLRRDRI-VVV----LNQKVYVYNFTD 123 (359)
Q Consensus 50 ~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~-~~~----~d~~i~i~d~~~ 123 (359)
.+.+..+.++.++..++.++ .|..+++||..+++.+.++. ++..+..++|..... .+. .|.+|+..++.+
T Consensus 14 ~~~i~sl~fs~~G~~litss----~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~d 89 (311)
T KOG1446|consen 14 NGKINSLDFSDDGLLLITSS----EDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLHD 89 (311)
T ss_pred CCceeEEEecCCCCEEEEec----CCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEEEEeec
Confidence 67888999998888888866 78999999999999999998 666777888865444 443 688999999999
Q ss_pred ceeeeeEeccCCCceeeeeecCCCccEEEecCCCCeeEEEEecCCeeeEEeecccccccEEEEccCCcEEEEEeCCCCeE
Q 018248 124 LKLVDQIETVVNPTGLCDVSQNAGPMVMACPGLLKGQVRVEDYGTKKSKYITAHASRIASIAMTLDGRFVATASSKGTLI 203 (359)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~v~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~~i 203 (359)
.+.++.+.+|...|..++.+|-++. +++ ++.|++|++|+.+....+-+. +...-..++|.|+|-++|++..... |
T Consensus 90 NkylRYF~GH~~~V~sL~~sP~~d~--FlS-~S~D~tvrLWDlR~~~cqg~l-~~~~~pi~AfDp~GLifA~~~~~~~-I 164 (311)
T KOG1446|consen 90 NKYLRYFPGHKKRVNSLSVSPKDDT--FLS-SSLDKTVRLWDLRVKKCQGLL-NLSGRPIAAFDPEGLIFALANGSEL-I 164 (311)
T ss_pred CceEEEcCCCCceEEEEEecCCCCe--EEe-cccCCeEEeeEecCCCCceEE-ecCCCcceeECCCCcEEEEecCCCe-E
Confidence 9999999999999999999998865 444 678999999999853333222 2233456899999999999988877 9
Q ss_pred EEEEcCCC--cEEEEeecC-CCCcceEEEEecCCCCEEEEEcCCCcEEEEEccCCCCCCCCCccccCCCCCccCCCCCce
Q 018248 204 RVFNTMDG--SLLQEMRRG-AERAEIYSLAFSSNAQWLAASSDKGTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSAI 280 (359)
Q Consensus 204 ~iwd~~~~--~~~~~~~~~-~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (359)
++||++.. .+..++... ......+.+.|||||++|+.++..+.+++.|.-.+....
T Consensus 165 kLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~--------------------- 223 (311)
T KOG1446|consen 165 KLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKS--------------------- 223 (311)
T ss_pred EEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEee---------------------
Confidence 99999864 344444432 245689999999999999999999999999988876211
Q ss_pred eeeeEeeeecceEEecccceeEEeecCCcEEEeeecccCCEEEEEecCCeEEEEEeCC
Q 018248 281 SSFRFIRGVLPKYFSSKWSMAQFRLPENVQYLVGFGRQNNTIVIVGLDGSYYKCEFDP 338 (359)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~ 338 (359)
.+... ...........|+||++++++|+.||+|++|++..
T Consensus 224 ------------tfs~~------~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~t 263 (311)
T KOG1446|consen 224 ------------TFSGY------PNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLET 263 (311)
T ss_pred ------------eEeec------cCCCCcceeEEECCCCcEEEEecCCCcEEEEEcCC
Confidence 11111 00111225689999999999999999999999965
No 92
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.95 E-value=1e-26 Score=188.90 Aligned_cols=279 Identities=14% Similarity=0.170 Sum_probs=221.5
Q ss_pred CCCCCceEEEEEccCCCEEEEecCCceEEEEcCCCcc-eeeeecc-cCCCCceeEEEEeccCCEEEEEecCCCCCCeEEE
Q 018248 3 QPDPITIHHLALNQDHGCFATGTETGFRVYLSDPYKP-IMRRDFD-RNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMI 80 (359)
Q Consensus 3 ~~h~~~v~~~~~s~~g~~l~~~~d~~i~iw~~~~~~~-~~~~~~~-~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~i 80 (359)
-.|..-|.++.+|...+++.+|+.|.|+|||+..... .....+. .....-+..+.+.++++.+++.+ +-.++.|
T Consensus 416 L~HGEvVcAvtIS~~trhVyTgGkgcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGG----eastlsi 491 (705)
T KOG0639|consen 416 LAHGEVVCAVTISNPTRHVYTGGKGCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGG----EASTLSI 491 (705)
T ss_pred hccCcEEEEEEecCCcceeEecCCCeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEecc----ccceeee
Confidence 3588889999999999999999999999999974321 1111111 01255678888889998888776 5689999
Q ss_pred EECCCccEEee--ec-cCcceeEEEEecceeEEE---ecCeEEEEEcccceeeeeEeccCCCceeeeeecCCCccEEEec
Q 018248 81 WDDHENRYLGE--LS-FRSEVKNVRLRRDRIVVV---LNQKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAGPMVMACP 154 (359)
Q Consensus 81 wd~~~~~~~~~--~~-~~~~v~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 154 (359)
||+........ +. .......++.+||.++.+ .||.|.|||+.+...++.+++|...+.++.+++++.. |-+
T Consensus 492 WDLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~dGtk--lWT- 568 (705)
T KOG0639|consen 492 WDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGTK--LWT- 568 (705)
T ss_pred eeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecCCCce--eec-
Confidence 99876544333 33 334677899999998877 9999999999999999999999999999999999987 555
Q ss_pred CCCCeeEEEEecCCeeeEEeecccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcEEEEeecCCCCcceEEEEecCC
Q 018248 155 GLLKGQVRVEDYGTKKSKYITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSN 234 (359)
Q Consensus 155 g~~d~~v~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~ 234 (359)
|+-|++|+.|+.+......-......|.++..+|++.+|++|-+++. +.|-..... ..+.+. .|.+-|.++.|.+-
T Consensus 569 GGlDntvRcWDlregrqlqqhdF~SQIfSLg~cP~~dWlavGMens~-vevlh~skp-~kyqlh--lheScVLSlKFa~c 644 (705)
T KOG0639|consen 569 GGLDNTVRCWDLREGRQLQQHDFSSQIFSLGYCPTGDWLAVGMENSN-VEVLHTSKP-EKYQLH--LHESCVLSLKFAYC 644 (705)
T ss_pred CCCccceeehhhhhhhhhhhhhhhhhheecccCCCccceeeecccCc-EEEEecCCc-cceeec--ccccEEEEEEeccc
Confidence 77899999998765322222234678999999999999999999998 888876433 333443 38899999999999
Q ss_pred CCEEEEEcCCCcEEEEEccCCCCCCCCCccccCCCCCccCCCCCceeeeeEeeeecceEEecccceeEEeecC-CcEEEe
Q 018248 235 AQWLAASSDKGTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSAISSFRFIRGVLPKYFSSKWSMAQFRLPE-NVQYLV 313 (359)
Q Consensus 235 ~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~ 313 (359)
|+++++.+.|+.+..|...-+... |+.++ ..|.+|
T Consensus 645 GkwfvStGkDnlLnawrtPyGasi--------------------------------------------FqskE~SsVlsC 680 (705)
T KOG0639|consen 645 GKWFVSTGKDNLLNAWRTPYGASI--------------------------------------------FQSKESSSVLSC 680 (705)
T ss_pred CceeeecCchhhhhhccCccccce--------------------------------------------eeccccCcceee
Confidence 999999999999999998877622 22233 678999
Q ss_pred eecccCCEEEEEecCCeEEEEEe
Q 018248 314 GFGRQNNTIVIVGLDGSYYKCEF 336 (359)
Q Consensus 314 ~~s~~~~~l~~~~~dg~i~v~~~ 336 (359)
..|.|.++|++|+.|....||.+
T Consensus 681 DIS~ddkyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 681 DISFDDKYIVTGSGDKKATVYEV 703 (705)
T ss_pred eeccCceEEEecCCCcceEEEEE
Confidence 99999999999999999999876
No 93
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=3.8e-26 Score=184.77 Aligned_cols=237 Identities=16% Similarity=0.198 Sum_probs=195.2
Q ss_pred CCCceEEEEEccCCCEEEEec-CCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEEC
Q 018248 5 DPITIHHLALNQDHGCFATGT-ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDD 83 (359)
Q Consensus 5 h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~ 83 (359)
.+..|+++.|-.||++||+|. .|.|+|||..+ ....+.+. +|+.++..+.|++..+.++..++ .|+.+++||+
T Consensus 67 Fk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~--r~iLR~~~-ah~apv~~~~f~~~d~t~l~s~s---Dd~v~k~~d~ 140 (487)
T KOG0310|consen 67 FKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKS--RVILRQLY-AHQAPVHVTKFSPQDNTMLVSGS---DDKVVKYWDL 140 (487)
T ss_pred hccceeEEEeecCCeEEEccCCcCcEEEecccc--HHHHHHHh-hccCceeEEEecccCCeEEEecC---CCceEEEEEc
Confidence 457799999999999999999 99999999654 22334555 89999999999998887766554 5799999999
Q ss_pred CCccEEeeec-cCcceeEEEEecceeEE-E---ecCeEEEEEcccc-eeeeeEeccCCCceeeeeecCCCccEEEecCCC
Q 018248 84 HENRYLGELS-FRSEVKNVRLRRDRIVV-V---LNQKVYVYNFTDL-KLVDQIETVVNPTGLCDVSQNAGPMVMACPGLL 157 (359)
Q Consensus 84 ~~~~~~~~~~-~~~~v~~~~~~~~~~~~-~---~d~~i~i~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~ 157 (359)
.+......+. |.+.|++.+|+|....+ + .||.|++||++.. ..+..+ .|..++..+.+-|.+.. ++++|
T Consensus 141 s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~el-nhg~pVe~vl~lpsgs~--iasAg-- 215 (487)
T KOG0310|consen 141 STAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVEL-NHGCPVESVLALPSGSL--IASAG-- 215 (487)
T ss_pred CCcEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEe-cCCCceeeEEEcCCCCE--EEEcC--
Confidence 9888755666 99999999999976533 3 8999999999776 555555 47788998888888765 55543
Q ss_pred CeeEEEEecC-C-eeeEEeecccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcEEEEeecCCCCcceEEEEecCCC
Q 018248 158 KGQVRVEDYG-T-KKSKYITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSNA 235 (359)
Q Consensus 158 d~~v~~~~~~-~-~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~ 235 (359)
.+.|++|+.. + +.+..+..|...|+|+++..++..|++++-|+. |++||+.+.+.+..+. .+++|.+++.+|++
T Consensus 216 Gn~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~-VKVfd~t~~Kvv~s~~---~~~pvLsiavs~dd 291 (487)
T KOG0310|consen 216 GNSVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSLDRH-VKVFDTTNYKVVHSWK---YPGPVLSIAVSPDD 291 (487)
T ss_pred CCeEEEEEecCCceehhhhhcccceEEEEEeecCCceEeecccccc-eEEEEccceEEEEeee---cccceeeEEecCCC
Confidence 4589999987 4 344445559999999999999999999999999 9999999999998887 56899999999999
Q ss_pred CEEEEEcCCCcEEEEEccCCC
Q 018248 236 QWLAASSDKGTVHVFGLKVDS 256 (359)
Q Consensus 236 ~~l~~~~~dg~i~iw~~~~~~ 256 (359)
+.++.|..+|.+.+=+....+
T Consensus 292 ~t~viGmsnGlv~~rr~~~k~ 312 (487)
T KOG0310|consen 292 QTVVIGMSNGLVSIRRREVKK 312 (487)
T ss_pred ceEEEecccceeeeehhhccc
Confidence 999999999988777555444
No 94
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.95 E-value=5.2e-27 Score=185.91 Aligned_cols=233 Identities=15% Similarity=0.242 Sum_probs=189.0
Q ss_pred CCceEEEEEccCCCEEEEec-CCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEECC
Q 018248 6 PITIHHLALNQDHGCFATGT-ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDDH 84 (359)
Q Consensus 6 ~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~~ 84 (359)
.++|+++.|.++++++++++ |+.+++|+++..+.. .++. ||.+.|..+.+......+ ++++ .|.+|++||+.
T Consensus 219 ~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~--~TLs-GHtdkVt~ak~~~~~~~v--Vsgs--~DRtiK~WDl~ 291 (459)
T KOG0288|consen 219 LGNITSIDFDSDNKHVIAASNDKNLRLWNVDSLRLR--HTLS-GHTDKVTAAKFKLSHSRV--VSGS--ADRTIKLWDLQ 291 (459)
T ss_pred CCCcceeeecCCCceEEeecCCCceeeeeccchhhh--hhhc-ccccceeeehhhccccce--eecc--ccchhhhhhhh
Confidence 46799999999999998888 999999999976555 5565 899999999887665553 3333 68999999999
Q ss_pred CccEEeeeccCcceeEEEEecceeEEE--ecCeEEEEEcccceeeeeEeccCCCceeeeeecCCCccEEEecCCCCeeEE
Q 018248 85 ENRYLGELSFRSEVKNVRLRRDRIVVV--LNQKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAGPMVMACPGLLKGQVR 162 (359)
Q Consensus 85 ~~~~~~~~~~~~~v~~~~~~~~~~~~~--~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~v~ 162 (359)
...+..++-....+.++..++. .++. .|+.|+.||+++..+...++.+. .+..+.+++++.. +.+ .+.|.++.
T Consensus 292 k~~C~kt~l~~S~cnDI~~~~~-~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg-~vtSl~ls~~g~~--lLs-ssRDdtl~ 366 (459)
T KOG0288|consen 292 KAYCSKTVLPGSQCNDIVCSIS-DVISGHFDKKVRFWDIRSADKTRSVPLGG-RVTSLDLSMDGLE--LLS-SSRDDTLK 366 (459)
T ss_pred hhheeccccccccccceEecce-eeeecccccceEEEeccCCceeeEeecCc-ceeeEeeccCCeE--Eee-ecCCCcee
Confidence 9999988877777888877622 2222 89999999999999998888765 7889999998876 444 34788999
Q ss_pred EEecCCeee-EEeecc----cccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcEEEEeecCCCCcceEEEEecCCCCE
Q 018248 163 VEDYGTKKS-KYITAH----ASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSNAQW 237 (359)
Q Consensus 163 ~~~~~~~~~-~~~~~~----~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~ 237 (359)
+.+.++..+ ..+.+. ....+.+.|||++.|+++|+.||. |+||++.++++...+........|++++|+|.|..
T Consensus 367 viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgs-v~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~ 445 (459)
T KOG0288|consen 367 VIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGS-VYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSG 445 (459)
T ss_pred eeecccccEEEEeeccccccccccceeEECCCCceeeeccCCCc-EEEEEccCceEEEEeccCCCCcceEEEEEcCCCch
Confidence 966655444 333321 234889999999999999999999 99999999999988886544447999999999999
Q ss_pred EEEEcCCCcEEEEE
Q 018248 238 LAASSDKGTVHVFG 251 (359)
Q Consensus 238 l~~~~~dg~i~iw~ 251 (359)
|++++.++.+.+|.
T Consensus 446 Llsadk~~~v~lW~ 459 (459)
T KOG0288|consen 446 LLSADKQKAVTLWT 459 (459)
T ss_pred hhcccCCcceEecC
Confidence 99999999999993
No 95
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.95 E-value=7.2e-26 Score=191.45 Aligned_cols=283 Identities=12% Similarity=0.124 Sum_probs=214.3
Q ss_pred eEEEEEccCCCEEEEec-CCceEEEEcCCCcceeeeecccCCCCceeEEEEecc-----------CCEEEEEecCCCCCC
Q 018248 9 IHHLALNQDHGCFATGT-ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFR-----------SNIICLVNSGPHQSN 76 (359)
Q Consensus 9 v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-----------~~~~~~~~~~~~~d~ 76 (359)
-.++.|++....|.+.- |..++|||+..-...-+...-.-|...|+.+...|. +..+..++ .|+
T Consensus 327 ~IA~~Fdet~~klscVYndhSlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCS----sD~ 402 (1080)
T KOG1408|consen 327 AIACQFDETTDKLSCVYNDHSLYVWDVRDVNKVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCS----SDG 402 (1080)
T ss_pred eeEEEecCCCceEEEEEcCceEEEEeccccccccceeeeeeccceeeeeccccccccCcccccCCccceeEec----CCC
Confidence 35788999999998887 999999999864433222111157888877776652 12234444 689
Q ss_pred eEEEEECCCc---cEEee-----------------------------------eccCcceeEEEEecceeEEE---ecCe
Q 018248 77 KVMIWDDHEN---RYLGE-----------------------------------LSFRSEVKNVRLRRDRIVVV---LNQK 115 (359)
Q Consensus 77 ~i~iwd~~~~---~~~~~-----------------------------------~~~~~~v~~~~~~~~~~~~~---~d~~ 115 (359)
+|++||+..+ +..+. +.....+++++.+|+++.++ ..|.
T Consensus 403 TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~Gn 482 (1080)
T KOG1408|consen 403 TIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGN 482 (1080)
T ss_pred cEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcceecccCccCc
Confidence 9999998652 11100 00122589999999999999 6789
Q ss_pred EEEEEcccceeeeeEeccCCCceeeeeecCC-CccEEEecCCCCeeEEEEecCC--eeeEEeecc---------------
Q 018248 116 VYVYNFTDLKLVDQIETVVNPTGLCDVSQNA-GPMVMACPGLLKGQVRVEDYGT--KKSKYITAH--------------- 177 (359)
Q Consensus 116 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~g~~d~~v~~~~~~~--~~~~~~~~~--------------- 177 (359)
+++|++...+....++.|...+.++.++... ...+||+ ++.|..|.+++... ..++++.+|
T Consensus 483 lrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLAS-asrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln 561 (1080)
T KOG1408|consen 483 LRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLAS-ASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLN 561 (1080)
T ss_pred eEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhh-ccCCceEEEEecccccchhhhhcccccceeEEEEeecCCc
Confidence 9999999999999999999999888887643 2345565 77899999966532 112222222
Q ss_pred ----------------------------------cccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcEEEEeecCC-C
Q 018248 178 ----------------------------------ASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRRGA-E 222 (359)
Q Consensus 178 ----------------------------------~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~~~~~~~~~-~ 222 (359)
+..+..++..|..+++++++.|.. |+|||+++++..+.|++.. |
T Consensus 562 ~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrn-irif~i~sgKq~k~FKgs~~~ 640 (1080)
T KOG1408|consen 562 RKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRN-IRIFDIESGKQVKSFKGSRDH 640 (1080)
T ss_pred eEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccc-eEEEeccccceeeeecccccC
Confidence 224566777788889999999999 9999999999999998743 4
Q ss_pred CcceEEEEecCCCCEEEEEcCCCcEEEEEccCCCCCCCCCccccCCCCCccCCCCCceeeeeEeeeecceEEecccceeE
Q 018248 223 RAEIYSLAFSSNAQWLAASSDKGTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSAISSFRFIRGVLPKYFSSKWSMAQ 302 (359)
Q Consensus 223 ~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (359)
.+....+...|.|-||++.+.|.++.++|+-+++.. ++
T Consensus 641 eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcv------------------------------------------A~ 678 (1080)
T KOG1408|consen 641 EGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECV------------------------------------------AQ 678 (1080)
T ss_pred CCceEEEEECCCccEEEEeecCCceEEEEeccchhh------------------------------------------hh
Confidence 578889999999999999999999999999998843 12
Q ss_pred EeecCCcEEEeeecccCCEEEEEecCCeEEEEEeCCC
Q 018248 303 FRLPENVQYLVGFGRQNNTIVIVGLDGSYYKCEFDPM 339 (359)
Q Consensus 303 ~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~~ 339 (359)
+-.|.+.|+.+.|.+|.+.|++++.||.|+||+++.+
T Consensus 679 m~GHsE~VTG~kF~nDCkHlISvsgDgCIFvW~lp~~ 715 (1080)
T KOG1408|consen 679 MTGHSEAVTGVKFLNDCKHLISVSGDGCIFVWKLPLT 715 (1080)
T ss_pred hcCcchheeeeeecccchhheeecCCceEEEEECchh
Confidence 3456678999999999999999999999999999764
No 96
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.95 E-value=8.2e-26 Score=171.94 Aligned_cols=285 Identities=14% Similarity=0.164 Sum_probs=213.0
Q ss_pred CCCCCceEEEEEcc-CCCEEEEec-CCceEEEEcCCCcc------e----e--eeecccCCCCceeEEEEeccCCEEEEE
Q 018248 3 QPDPITIHHLALNQ-DHGCFATGT-ETGFRVYLSDPYKP------I----M--RRDFDRNPRGGTQLVSMLFRSNIICLV 68 (359)
Q Consensus 3 ~~h~~~v~~~~~s~-~g~~l~~~~-d~~i~iw~~~~~~~------~----~--~~~~~~~h~~~v~~~~~~~~~~~~~~~ 68 (359)
.+|.+.|+++...+ .|+++++|+ ||.|.+||++.... + . .+.-+.+|...|..+.|.|-...+++.
T Consensus 40 r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFts 119 (397)
T KOG4283|consen 40 RPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTS 119 (397)
T ss_pred ccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeec
Confidence 57999999999998 689999999 99999999975331 1 1 122234788899999999988888776
Q ss_pred ecCCCCCCeEEEEECCCccEEeeeccCcceeEEEEecce---eEEE---ecCeEEEEEcccceeeeeEeccCCCceeeee
Q 018248 69 NSGPHQSNKVMIWDDHENRYLGELSFRSEVKNVRLRRDR---IVVV---LNQKVYVYNFTDLKLVDQIETVVNPTGLCDV 142 (359)
Q Consensus 69 ~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~---~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~ 142 (359)
+. .|.++++||..+-+....++.++.|.+-+++|-. .+++ .+-.|++.|+.+|..-+.+.+|...+..+.|
T Consensus 120 sS---FDhtlKVWDtnTlQ~a~~F~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~W 196 (397)
T KOG4283|consen 120 SS---FDHTLKVWDTNTLQEAVDFKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEW 196 (397)
T ss_pred cc---ccceEEEeecccceeeEEeecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEe
Confidence 65 7999999999999999999999999999999853 3444 7889999999999999999999999999999
Q ss_pred ecCCCccEEEecCCCCeeEEEEecCC--eeeEE--------------eecccccccEEEEccCCcEEEEEeCCCCeEEEE
Q 018248 143 SQNAGPMVMACPGLLKGQVRVEDYGT--KKSKY--------------ITAHASRIASIAMTLDGRFVATASSKGTLIRVF 206 (359)
Q Consensus 143 ~~~~~~~~l~~~g~~d~~v~~~~~~~--~~~~~--------------~~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iw 206 (359)
+|..+. +|+ +|+.||.|++|+.+. .+... -.+|.+.++.++|+.++.++++++.|.. +++|
T Consensus 197 sp~~e~-vLa-tgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r-~r~w 273 (397)
T KOG4283|consen 197 SPSSEW-VLA-TGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDR-IRVW 273 (397)
T ss_pred ccCcee-EEE-ecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccc-eEEe
Confidence 998875 344 488999999998764 22222 2457788999999999999999999999 9999
Q ss_pred EcCCCcEEE-EeecCCCCcceEEEEe---cCCCCEEEEEcCCCcEEEEEccCCCCCCCCCccccCCCCCccCCCCCceee
Q 018248 207 NTMDGSLLQ-EMRRGAERAEIYSLAF---SSNAQWLAASSDKGTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSAISS 282 (359)
Q Consensus 207 d~~~~~~~~-~~~~~~~~~~i~~~~~---s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (359)
+..+|+... .+-.-.|+. -.++++ +.+...++---.++.+.++++-++...
T Consensus 274 n~~~G~ntl~~~g~~~~n~-~~~~~~~~~~~~s~vfv~~p~~~~lall~~~sgs~i------------------------ 328 (397)
T KOG4283|consen 274 NMESGRNTLREFGPIIHNQ-TTSFAVHIQSMDSDVFVLFPNDGSLALLNLLEGSFV------------------------ 328 (397)
T ss_pred ecccCcccccccccccccc-cccceEEEeecccceEEEEecCCeEEEEEccCceEE------------------------
Confidence 998876422 111110111 111111 223333333334466777776665511
Q ss_pred eeEeeeecceEEecccceeEEeecCCcEEEeeecccCCEEEEEecCCeEEEEEe
Q 018248 283 FRFIRGVLPKYFSSKWSMAQFRLPENVQYLVGFGRQNNTIVIVGLDGSYYKCEF 336 (359)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~ 336 (359)
+. +..+...+.+.++.|+=+...+|..|+.++.|..
T Consensus 329 ---------r~---------l~~h~k~i~c~~~~~~fq~~~tg~~d~ni~~w~p 364 (397)
T KOG4283|consen 329 ---------RR---------LSTHLKRINCAAYRPDFEQCFTGDMNGNIYMWSP 364 (397)
T ss_pred ---------Ee---------eecccceeeEEeecCchhhhhccccCCccccccc
Confidence 11 2223345778899999899999999999999965
No 97
>PTZ00420 coronin; Provisional
Probab=99.95 E-value=7.9e-25 Score=190.63 Aligned_cols=224 Identities=10% Similarity=0.130 Sum_probs=168.0
Q ss_pred CCCCceEEEEEccC-CCEEEEec-CCceEEEEcCCCcce------eeeecccCCCCceeEEEEeccCCEEEEEecCCCCC
Q 018248 4 PDPITIHHLALNQD-HGCFATGT-ETGFRVYLSDPYKPI------MRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQS 75 (359)
Q Consensus 4 ~h~~~v~~~~~s~~-g~~l~~~~-d~~i~iw~~~~~~~~------~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d 75 (359)
.|...|.+++|+|+ +.+|++|+ |+.|+||++.+.... ....+. +|...|..++|+|++..++++++ .|
T Consensus 72 gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~-gH~~~V~sVaf~P~g~~iLaSgS---~D 147 (568)
T PTZ00420 72 GHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILK-GHKKKISIIDWNPMNYYIMCSSG---FD 147 (568)
T ss_pred CCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEee-cCCCcEEEEEECCCCCeEEEEEe---CC
Confidence 58899999999997 78999999 999999999754221 112344 89999999999998776543332 68
Q ss_pred CeEEEEECCCccEEeeeccCcceeEEEEecceeEEE---ecCeEEEEEcccceeeeeEeccCCCceeee-----eecCCC
Q 018248 76 NKVMIWDDHENRYLGELSFRSEVKNVRLRRDRIVVV---LNQKVYVYNFTDLKLVDQIETVVNPTGLCD-----VSQNAG 147 (359)
Q Consensus 76 ~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~-----~~~~~~ 147 (359)
+.|++||+.+++.+..+.+...|.+++|+|+|.+++ .|+.|++||+++++.+..+..|.+.+.... +++++.
T Consensus 148 gtIrIWDl~tg~~~~~i~~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d~~ 227 (568)
T PTZ00420 148 SFVNIWDIENEKRAFQINMPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGLGGDDN 227 (568)
T ss_pred CeEEEEECCCCcEEEEEecCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEecccCCceeEEEEeeeEcCCCC
Confidence 999999999998888887778899999999999888 689999999999999999988887654333 335544
Q ss_pred ccEEEecCCCC---eeEEEEecCC--eeeEEeec--ccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcEEEEeecC
Q 018248 148 PMVMACPGLLK---GQVRVEDYGT--KKSKYITA--HASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRRG 220 (359)
Q Consensus 148 ~~~l~~~g~~d---~~v~~~~~~~--~~~~~~~~--~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~~~~~~~~ 220 (359)
+++++|..+ +.|+||+.+. .++..+.. +.+.+......++|.++++|+.|+. |++|++..+. +..+...
T Consensus 228 --~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~t-Ir~~e~~~~~-~~~l~~~ 303 (568)
T PTZ00420 228 --YILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGN-CRYYQHSLGS-IRKVNEY 303 (568)
T ss_pred --EEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECCCe-EEEEEccCCc-EEeeccc
Confidence 355545433 4799999873 44444332 2233333444556889999999999 9999998764 3344433
Q ss_pred CCCcceEEEEecCCC
Q 018248 221 AERAEIYSLAFSSNA 235 (359)
Q Consensus 221 ~~~~~i~~~~~s~~~ 235 (359)
.+..++.+++|.|..
T Consensus 304 ~s~~p~~g~~f~Pkr 318 (568)
T PTZ00420 304 KSCSPFRSFGFLPKQ 318 (568)
T ss_pred ccCCCccceEEcccc
Confidence 356788899999964
No 98
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=1e-25 Score=173.26 Aligned_cols=282 Identities=14% Similarity=0.203 Sum_probs=224.6
Q ss_pred CCCCceEEEEEccCCCEEEEec-CCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEE
Q 018248 4 PDPITIHHLALNQDHGCFATGT-ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWD 82 (359)
Q Consensus 4 ~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd 82 (359)
.|++.|+.++-......+.+++ |.+.+||.++++..... +. ||.+.|.++.|++++..++.++ .|++..||.
T Consensus 146 GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~--Y~-GH~GSVNsikfh~s~~L~lTaS----GD~taHIW~ 218 (481)
T KOG0300|consen 146 GHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLAT--YT-GHTGSVNSIKFHNSGLLLLTAS----GDETAHIWK 218 (481)
T ss_pred ccccceeeehhhcCCcceeecccccceeEEeeccccceee--ec-ccccceeeEEeccccceEEEcc----CCcchHHHH
Confidence 5899999999888888889999 99999999999877644 33 9999999999999888888777 578888986
Q ss_pred ------CCCc----------------------------------cEEeeec-cCcceeEEEEecceeEEE---ecCeEEE
Q 018248 83 ------DHEN----------------------------------RYLGELS-FRSEVKNVRLRRDRIVVV---LNQKVYV 118 (359)
Q Consensus 83 ------~~~~----------------------------------~~~~~~~-~~~~v~~~~~~~~~~~~~---~d~~i~i 118 (359)
+... -++..+. |...|.+..|...++.++ .|.+-.+
T Consensus 219 ~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnl 298 (481)
T KOG0300|consen 219 AAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANL 298 (481)
T ss_pred HhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeecccccee
Confidence 1110 1223334 666777777877776666 8999999
Q ss_pred EEcccceeeeeEeccCCCceeeeeecCCCccEEEecCCCCeeEEEEecCC--eeeEEeecccccccEEEEccCCcEEEEE
Q 018248 119 YNFTDLKLVDQIETVVNPTGLCDVSQNAGPMVMACPGLLKGQVRVEDYGT--KKSKYITAHASRIASIAMTLDGRFVATA 196 (359)
Q Consensus 119 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~v~~~~~~~--~~~~~~~~~~~~i~~~~~s~~~~~l~~~ 196 (359)
||+++++.+..+.+|....+-++-+|... ++++ .+.|.+.++|+.+. ..+..|++|...|+++.|..+.+ +++|
T Consensus 299 wDVEtge~v~~LtGHd~ELtHcstHptQr--LVvT-sSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~dd~-vVSg 374 (481)
T KOG0300|consen 299 WDVETGEVVNILTGHDSELTHCSTHPTQR--LVVT-SSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTDDR-VVSG 374 (481)
T ss_pred eeeccCceeccccCcchhccccccCCcce--EEEE-eccCceeEeccchhhcceeeeecccccceeEEEEecCCc-eeec
Confidence 99999999999999999888777777654 3444 67899999999875 55778999999999999987765 6799
Q ss_pred eCCCCeEEEEEcCCCc-EEEEeecCCCCcceEEEEecCCCCEEEEEcCCCcEEEEEccCCCCCCCCCccccCCCCCccCC
Q 018248 197 SSKGTLIRVFNTMDGS-LLQEMRRGAERAEIYSLAFSSNAQWLAASSDKGTVHVFGLKVDSGSPGTSKLHSASEPNLSSK 275 (359)
Q Consensus 197 ~~dg~~i~iwd~~~~~-~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (359)
++|.+ |++||+++.. ++.++.. .++++.++.+..+..|+.--++..|++||+.......
T Consensus 375 SDDrT-vKvWdLrNMRsplATIRt---dS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~RlaR---------------- 434 (481)
T KOG0300|consen 375 SDDRT-VKVWDLRNMRSPLATIRT---DSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNRLAR---------------- 434 (481)
T ss_pred CCCce-EEEeeeccccCcceeeec---CCccceeEeecCCceEEeccCCceEEEEecCCCcccc----------------
Confidence 99999 9999998764 6777774 4789999999888899988888999999998765211
Q ss_pred CCCceeeeeEeeeecceEEecccceeEEeecCCcEEEeeecccC--CEEEEEecCCeEEEEEeCC
Q 018248 276 NSSAISSFRFIRGVLPKYFSSKWSMAQFRLPENVQYLVGFGRQN--NTIVIVGLDGSYYKCEFDP 338 (359)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~--~~l~~~~~dg~i~v~~~~~ 338 (359)
+|+. . -+.|...|.+++|..+. .-|++++-|..+.-|++..
T Consensus 435 --------------lPrt---s-----RqgHrRMV~c~AW~eehp~cnLftcGFDR~v~gW~in~ 477 (481)
T KOG0300|consen 435 --------------LPRT---S-----RQGHRRMVTCCAWLEEHPACNLFTCGFDRMVAGWKINT 477 (481)
T ss_pred --------------CCcc---c-----ccccceeeeeeeccccCcccccccccccceeeeeEecc
Confidence 2221 1 23355678999997654 5689999999999999875
No 99
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.95 E-value=3.3e-25 Score=166.26 Aligned_cols=242 Identities=14% Similarity=0.133 Sum_probs=191.2
Q ss_pred CCCCceEEEEEccCCCEEEEec-CCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCC-CCCeEEEE
Q 018248 4 PDPITIHHLALNQDHGCFATGT-ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPH-QSNKVMIW 81 (359)
Q Consensus 4 ~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~-~d~~i~iw 81 (359)
.|.+.|+|++.+-+.+++++|+ |.++++||+++++.+....+ ..+|..+.|+++++.++++....- ..+.|.++
T Consensus 50 GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk~la~~k~----~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~f 125 (327)
T KOG0643|consen 50 GHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGKQLATWKT----NSPVKRVDFSFGGNLILASTDKQMGYTCFVSVF 125 (327)
T ss_pred CCCceEEEEEecCCcceeeeccccceeEEEEcCCCcEEEEeec----CCeeEEEeeccCCcEEEEEehhhcCcceEEEEE
Confidence 5899999999999999999999 99999999999999877776 688999999999998887763221 45789999
Q ss_pred ECC-------CccEEeeec-cCcceeEEEEecceeEEE---ecCeEEEEEcccce-eeeeEeccCCCceeeeeecCCCcc
Q 018248 82 DDH-------ENRYLGELS-FRSEVKNVRLRRDRIVVV---LNQKVYVYNFTDLK-LVDQIETVVNPTGLCDVSQNAGPM 149 (359)
Q Consensus 82 d~~-------~~~~~~~~~-~~~~v~~~~~~~~~~~~~---~d~~i~i~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 149 (359)
|++ ..+++..+. +...++.+-|.|-++.++ .+|.|.+||+++++ .+...+.|...++.++++++...
T Consensus 126 di~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~- 204 (327)
T KOG0643|consen 126 DIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTY- 204 (327)
T ss_pred EccCChhhhcccCceEEecCCccceeeeeecccCCEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcce-
Confidence 987 345566666 788999999999998887 89999999999874 45555778888999999998865
Q ss_pred EEEecCCCCeeEEEEecCC-eeeEEeecccccccEEEEccCCcEEEEEeCCCC-eEEEEEcCCC------------cEEE
Q 018248 150 VMACPGLLKGQVRVEDYGT-KKSKYITAHASRIASIAMTLDGRFVATASSKGT-LIRVFNTMDG------------SLLQ 215 (359)
Q Consensus 150 ~l~~~g~~d~~v~~~~~~~-~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~-~i~iwd~~~~------------~~~~ 215 (359)
+++ ++.|.+-++|+... ..++++. -..+|++.+++|....++.|+.... .|.-=+.+.| +.+.
T Consensus 205 -FiT-~s~Dttakl~D~~tl~v~Kty~-te~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEig 281 (327)
T KOG0643|consen 205 -FIT-GSKDTTAKLVDVRTLEVLKTYT-TERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIG 281 (327)
T ss_pred -EEe-cccCccceeeeccceeeEEEee-ecccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhc
Confidence 554 77899999977665 4444444 5779999999998777766653221 0221122222 3455
Q ss_pred EeecCCCCcceEEEEecCCCCEEEEEcCCCcEEEEEccCC
Q 018248 216 EMRRGAERAEIYSLAFSSNAQWLAASSDKGTVHVFGLKVD 255 (359)
Q Consensus 216 ~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~ 255 (359)
.+++ |-++|++++|+|+|+..++|++||.|++..++..
T Consensus 282 rvkG--HFGPINsvAfhPdGksYsSGGEDG~VR~h~Fd~~ 319 (327)
T KOG0643|consen 282 RVKG--HFGPINSVAFHPDGKSYSSGGEDGYVRLHHFDSN 319 (327)
T ss_pred cccc--cccCcceeEECCCCcccccCCCCceEEEEEeccc
Confidence 5666 7789999999999999999999999999877653
No 100
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.95 E-value=2.3e-25 Score=193.31 Aligned_cols=235 Identities=19% Similarity=0.283 Sum_probs=196.8
Q ss_pred CCCCceEEEEEccCCCEEEEec-CCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEE
Q 018248 4 PDPITIHHLALNQDHGCFATGT-ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWD 82 (359)
Q Consensus 4 ~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd 82 (359)
.|.+.|.++++..-+.+|++|+ |.++++||+.+++.. ..+. ||...+.++... +..+ ++++ .|.+|++|+
T Consensus 247 GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~--~~l~-gh~stv~~~~~~--~~~~--~sgs--~D~tVkVW~ 317 (537)
T KOG0274|consen 247 GHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECT--HSLQ-GHTSSVRCLTID--PFLL--VSGS--RDNTVKVWD 317 (537)
T ss_pred CCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEE--EEec-CCCceEEEEEcc--CceE--eecc--CCceEEEEe
Confidence 5899999999998888999999 999999999987666 5555 889988877653 2222 3333 699999999
Q ss_pred CCCccEEeeec-cCcceeEEEEecceeEEE--ecCeEEEEEcccceeeeeEeccCCCceeeeeecCCCccEEEecCCCCe
Q 018248 83 DHENRYLGELS-FRSEVKNVRLRRDRIVVV--LNQKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAGPMVMACPGLLKG 159 (359)
Q Consensus 83 ~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~--~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~ 159 (359)
+.++..+..+. |..+|.++..+ ...++. .|++|++||+.++++++.+.+|...|..+.+... + .+.+ |+.|+
T Consensus 318 v~n~~~l~l~~~h~~~V~~v~~~-~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~-~--~~~S-gs~D~ 392 (537)
T KOG0274|consen 318 VTNGACLNLLRGHTGPVNCVQLD-EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSE-N--RLLS-GSLDT 392 (537)
T ss_pred ccCcceEEEeccccccEEEEEec-CCEEEEEecCceEEEEEhhhceeeeeecCCcceEEEEEecCc-c--eEEe-eeecc
Confidence 99999999999 99999999998 333343 8999999999999999999999998888766554 2 2444 88899
Q ss_pred eEEEEecCCe--eeEEeecccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcEEEEeecCCCCcceEEEEecCCCCE
Q 018248 160 QVRVEDYGTK--KSKYITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSNAQW 237 (359)
Q Consensus 160 ~v~~~~~~~~--~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~ 237 (359)
.|++|+.+.. ++..+.+|...+..+.+ .+++|++++.|+. |++||..++++++.+... |...|..+++. ...
T Consensus 393 ~IkvWdl~~~~~c~~tl~~h~~~v~~l~~--~~~~Lvs~~aD~~-Ik~WD~~~~~~~~~~~~~-~~~~v~~l~~~--~~~ 466 (537)
T KOG0274|consen 393 TIKVWDLRTKRKCIHTLQGHTSLVSSLLL--RDNFLVSSSADGT-IKLWDAEEGECLRTLEGR-HVGGVSALALG--KEE 466 (537)
T ss_pred ceEeecCCchhhhhhhhcCCccccccccc--ccceeEecccccc-EEEeecccCceeeeeccC-CcccEEEeecC--cce
Confidence 9999998876 88889999998866654 6789999999999 999999999999999864 45788888886 467
Q ss_pred EEEEcCCCcEEEEEccCCCCC
Q 018248 238 LAASSDKGTVHVFGLKVDSGS 258 (359)
Q Consensus 238 l~~~~~dg~i~iw~~~~~~~~ 258 (359)
+++++.||.+++||++++...
T Consensus 467 il~s~~~~~~~l~dl~~~~~~ 487 (537)
T KOG0274|consen 467 ILCSSDDGSVKLWDLRSGTLI 487 (537)
T ss_pred EEEEecCCeeEEEecccCchh
Confidence 888899999999999998743
No 101
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.95 E-value=2e-23 Score=174.27 Aligned_cols=266 Identities=11% Similarity=0.126 Sum_probs=184.8
Q ss_pred CCEEEEec-CCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEECCCccEEeeeccCc
Q 018248 18 HGCFATGT-ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDDHENRYLGELSFRS 96 (359)
Q Consensus 18 g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~ 96 (359)
+..+++++ |+.+++||+++++.. ..+. +| ..+..+++++++..+++++. .++.|++||..+++.+..+....
T Consensus 1 ~~~~~s~~~d~~v~~~d~~t~~~~--~~~~-~~-~~~~~l~~~~dg~~l~~~~~---~~~~v~~~d~~~~~~~~~~~~~~ 73 (300)
T TIGR03866 1 EKAYVSNEKDNTISVIDTATLEVT--RTFP-VG-QRPRGITLSKDGKLLYVCAS---DSDTIQVIDLATGEVIGTLPSGP 73 (300)
T ss_pred CcEEEEecCCCEEEEEECCCCceE--EEEE-CC-CCCCceEECCCCCEEEEEEC---CCCeEEEEECCCCcEEEeccCCC
Confidence 35677877 999999999876654 3333 23 33566888888877655443 47999999999998887776444
Q ss_pred ceeEEEEecceeEEE----ecCeEEEEEcccceeeeeEeccCCCceeeeeecCCCccEEEecCCCCeeEEEEecCCeee-
Q 018248 97 EVKNVRLRRDRIVVV----LNQKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAGPMVMACPGLLKGQVRVEDYGTKKS- 171 (359)
Q Consensus 97 ~v~~~~~~~~~~~~~----~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~v~~~~~~~~~~- 171 (359)
.+..+.++|++..++ .++.|++||+.+.+.+..+... .....++++|+++. ++++......+.+|+......
T Consensus 74 ~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~-~~~~~~~~~~dg~~--l~~~~~~~~~~~~~d~~~~~~~ 150 (300)
T TIGR03866 74 DPELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPVG-VEPEGMAVSPDGKI--VVNTSETTNMAHFIDTKTYEIV 150 (300)
T ss_pred CccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeCC-CCcceEEECCCCCE--EEEEecCCCeEEEEeCCCCeEE
Confidence 567889999987654 5789999999888877776533 23466888898875 443222223455566554332
Q ss_pred EEeecccccccEEEEccCCcEEEEE-eCCCCeEEEEEcCCCcEEEEeecCC---C--CcceEEEEecCCCCEEEE-EcCC
Q 018248 172 KYITAHASRIASIAMTLDGRFVATA-SSKGTLIRVFNTMDGSLLQEMRRGA---E--RAEIYSLAFSSNAQWLAA-SSDK 244 (359)
Q Consensus 172 ~~~~~~~~~i~~~~~s~~~~~l~~~-~~dg~~i~iwd~~~~~~~~~~~~~~---~--~~~i~~~~~s~~~~~l~~-~~~d 244 (359)
.... ....+..++|+|++++|+++ ..++. |++||+++++.+..+.... + ......++|+|+++++++ .+.+
T Consensus 151 ~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~-v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~ 228 (300)
T TIGR03866 151 DNVL-VDQRPRFAEFTADGKELWVSSEIGGT-VSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPA 228 (300)
T ss_pred EEEE-cCCCccEEEECCCCCEEEEEcCCCCE-EEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCC
Confidence 2222 33456789999999988655 46888 9999999998777664211 1 112457889999998654 3456
Q ss_pred CcEEEEEccCCCCCCCCCccccCCCCCccCCCCCceeeeeEeeeecceEEecccceeEEeecCCcEEEeeecccCCEEEE
Q 018248 245 GTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSAISSFRFIRGVLPKYFSSKWSMAQFRLPENVQYLVGFGRQNNTIVI 324 (359)
Q Consensus 245 g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~ 324 (359)
+.+.+||+++++.. +.. .....+..++|+|++++|++
T Consensus 229 ~~i~v~d~~~~~~~---------------------------------~~~----------~~~~~~~~~~~~~~g~~l~~ 265 (300)
T TIGR03866 229 NRVAVVDAKTYEVL---------------------------------DYL----------LVGQRVWQLAFTPDEKYLLT 265 (300)
T ss_pred CeEEEEECCCCcEE---------------------------------EEE----------EeCCCcceEEECCCCCEEEE
Confidence 78999999876511 000 01235678999999999988
Q ss_pred Ee-cCCeEEEEEeCC
Q 018248 325 VG-LDGSYYKCEFDP 338 (359)
Q Consensus 325 ~~-~dg~i~v~~~~~ 338 (359)
+. .+|.|.+|++..
T Consensus 266 ~~~~~~~i~v~d~~~ 280 (300)
T TIGR03866 266 TNGVSNDVSVIDVAA 280 (300)
T ss_pred EcCCCCeEEEEECCC
Confidence 75 599999999876
No 102
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.95 E-value=7e-26 Score=181.72 Aligned_cols=244 Identities=11% Similarity=0.100 Sum_probs=189.4
Q ss_pred CCCCceEEEEEccCCCEE-EEec-CCceEEEEcCCCccee--------eeecccCCCCceeEEEEeccCCEEEEEecCCC
Q 018248 4 PDPITIHHLALNQDHGCF-ATGT-ETGFRVYLSDPYKPIM--------RRDFDRNPRGGTQLVSMLFRSNIICLVNSGPH 73 (359)
Q Consensus 4 ~h~~~v~~~~~s~~g~~l-~~~~-d~~i~iw~~~~~~~~~--------~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~ 73 (359)
.|++.|+.+.+-|....+ |+++ .+.+.|||........ ...+. ||...-..++|.+.....++.++
T Consensus 122 ~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~-gH~~eg~glsWn~~~~g~Lls~~--- 197 (422)
T KOG0264|consen 122 NHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLK-GHEKEGYGLSWNRQQEGTLLSGS--- 197 (422)
T ss_pred cCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEE-eecccccccccccccceeEeecc---
Confidence 588999999999976655 5566 8889999987432221 12344 88886666777776666655554
Q ss_pred CCCeEEEEECCCccE-------Eeeec-cCcceeEEEEecceeEEE----ecCeEEEEEcc--cceeeeeEeccCCCcee
Q 018248 74 QSNKVMIWDDHENRY-------LGELS-FRSEVKNVRLRRDRIVVV----LNQKVYVYNFT--DLKLVDQIETVVNPTGL 139 (359)
Q Consensus 74 ~d~~i~iwd~~~~~~-------~~~~~-~~~~v~~~~~~~~~~~~~----~d~~i~i~d~~--~~~~~~~~~~~~~~~~~ 139 (359)
.|++|++||+..... ...+. |...|..++|++-...++ .|+.+.|||++ +.++......|..++.+
T Consensus 198 ~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~ 277 (422)
T KOG0264|consen 198 DDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNC 277 (422)
T ss_pred CCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeE
Confidence 689999999875432 33344 889999999999654443 89999999998 56677777889999999
Q ss_pred eeeecCCCccEEEecCCCCeeEEEEecCC--eeeEEeecccccccEEEEccCC-cEEEEEeCCCCeEEEEEcCCCcEE--
Q 018248 140 CDVSQNAGPMVMACPGLLKGQVRVEDYGT--KKSKYITAHASRIASIAMTLDG-RFVATASSKGTLIRVFNTMDGSLL-- 214 (359)
Q Consensus 140 ~~~~~~~~~~~l~~~g~~d~~v~~~~~~~--~~~~~~~~~~~~i~~~~~s~~~-~~l~~~~~dg~~i~iwd~~~~~~~-- 214 (359)
++|+|.+.. +||+ |+.|++|.+|+++. .++..+.+|...|.++.|+|+. ..||+++.|+. +.+||+..-...
T Consensus 278 ~~fnp~~~~-ilAT-~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~r-l~vWDls~ig~eq~ 354 (422)
T KOG0264|consen 278 VAFNPFNEF-ILAT-GSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRR-LNVWDLSRIGEEQS 354 (422)
T ss_pred EEeCCCCCc-eEEe-ccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCc-EEEEeccccccccC
Confidence 999999865 4555 88899999999875 6788899999999999999965 58899999999 999998642111
Q ss_pred ----------EEeecCCCCcceEEEEecCCCC-EEEEEcCCCcEEEEEccC
Q 018248 215 ----------QEMRRGAERAEIYSLAFSSNAQ-WLAASSDKGTVHVFGLKV 254 (359)
Q Consensus 215 ----------~~~~~~~~~~~i~~~~~s~~~~-~l~~~~~dg~i~iw~~~~ 254 (359)
..|.-+.|...|..+.|+|+.. .|+++++|+.+.||+...
T Consensus 355 ~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~ 405 (422)
T KOG0264|consen 355 PEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMAE 405 (422)
T ss_pred hhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeeccc
Confidence 1133334889999999999876 467889999999999874
No 103
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=3.7e-26 Score=190.92 Aligned_cols=235 Identities=16% Similarity=0.243 Sum_probs=190.7
Q ss_pred EEEEc-cCCCEEEEec-CCceEEEEcCCCcc----eeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEECC
Q 018248 11 HLALN-QDHGCFATGT-ETGFRVYLSDPYKP----IMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDDH 84 (359)
Q Consensus 11 ~~~~s-~~g~~l~~~~-d~~i~iw~~~~~~~----~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~~ 84 (359)
.+..+ |.+++|.+|+ ||.|++|+...... .+...++ .|..-|..+.+.-+++.++.++ .|-+|++|+..
T Consensus 29 ~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme-~HsDWVNDiiL~~~~~tlIS~S----sDtTVK~W~~~ 103 (735)
T KOG0308|consen 29 ALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASME-HHSDWVNDIILCGNGKTLISAS----SDTTVKVWNAH 103 (735)
T ss_pred hccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhh-hhHhHHhhHHhhcCCCceEEec----CCceEEEeecc
Confidence 45555 4667799999 99999999864332 2344555 7888888888877788777777 78999999988
Q ss_pred Cc--cEEeeec-cCcceeEEEE-ecceeEEE---ecCeEEEEEcccce--eeee--------Ee-ccCCCceeeeeecCC
Q 018248 85 EN--RYLGELS-FRSEVKNVRL-RRDRIVVV---LNQKVYVYNFTDLK--LVDQ--------IE-TVVNPTGLCDVSQNA 146 (359)
Q Consensus 85 ~~--~~~~~~~-~~~~v~~~~~-~~~~~~~~---~d~~i~i~d~~~~~--~~~~--------~~-~~~~~~~~~~~~~~~ 146 (359)
.+ -+...+. |.+.|.|+++ -++...++ .|+.|.+||+.++. .+.. +. ++...+..++..+.+
T Consensus 104 ~~~~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~ 183 (735)
T KOG0308|consen 104 KDNTFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTG 183 (735)
T ss_pred cCcchhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcc
Confidence 77 5666777 9999999999 67777777 89999999998762 2222 22 455667777777666
Q ss_pred CccEEEecCCCCeeEEEEecCC-eeeEEeecccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcEEEEeecCCCCcc
Q 018248 147 GPMVMACPGLLKGQVRVEDYGT-KKSKYITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRRGAERAE 225 (359)
Q Consensus 147 ~~~~l~~~g~~d~~v~~~~~~~-~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~ 225 (359)
.++++ |+..+.+++|+... +.+..+++|...|..+..++||+.+++++.||+ |++||+...+++.++.. |...
T Consensus 184 --t~ivs-Ggtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgt-IrlWdLgqQrCl~T~~v--H~e~ 257 (735)
T KOG0308|consen 184 --TIIVS-GGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGT-IRLWDLGQQRCLATYIV--HKEG 257 (735)
T ss_pred --eEEEe-cCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCce-EEeeeccccceeeeEEe--ccCc
Confidence 34555 77899999988765 667778899999999999999999999999999 99999999999999987 6678
Q ss_pred eEEEEecCCCCEEEEEcCCCcEEEEEccCCC
Q 018248 226 IYSLAFSSNAQWLAASSDKGTVHVFGLKVDS 256 (359)
Q Consensus 226 i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~ 256 (359)
|+++..+|+-..+.+|+.||.|..=|+++..
T Consensus 258 VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~~ 288 (735)
T KOG0308|consen 258 VWALQSSPSFTHVYSGGRDGNIYRTDLRNPA 288 (735)
T ss_pred eEEEeeCCCcceEEecCCCCcEEecccCCch
Confidence 9999999999999999999999999998853
No 104
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=1.8e-24 Score=187.70 Aligned_cols=273 Identities=14% Similarity=0.138 Sum_probs=214.2
Q ss_pred CCCCceEEEEEccCCCEEEEec-CCceEEEEcCCC-cceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEE
Q 018248 4 PDPITIHHLALNQDHGCFATGT-ETGFRVYLSDPY-KPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIW 81 (359)
Q Consensus 4 ~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~-~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iw 81 (359)
.|...-+.++|.|+|++|.+++ |+.|++|+.... +...... -+...+.+++ -..+.++.++ .+++|.+|
T Consensus 11 aht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~---~~g~~v~~ia--~~s~~f~~~s----~~~tv~~y 81 (933)
T KOG1274|consen 11 AHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETID---ISGELVSSIA--CYSNHFLTGS----EQNTVLRY 81 (933)
T ss_pred hccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhh---ccCceeEEEe--ecccceEEee----ccceEEEe
Confidence 5888899999999999998888 999999998765 3332111 1344444444 4455666666 78999999
Q ss_pred ECCCccEEeeec-cCcceeEEEEecceeEEE---ecCeEEEEEcccceeeeeEeccCCCceeeeeecCCCccEEEecCCC
Q 018248 82 DDHENRYLGELS-FRSEVKNVRLRRDRIVVV---LNQKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAGPMVMACPGLL 157 (359)
Q Consensus 82 d~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~ 157 (359)
.+..++.-..+. ..-++++++++.+|.+++ .|-.|++.++.+......+.+|..++..+.+.|.++. ||+ .+-
T Consensus 82 ~fps~~~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~f--LAv-ss~ 158 (933)
T KOG1274|consen 82 KFPSGEEDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNF--LAV-SSC 158 (933)
T ss_pred eCCCCCccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCE--EEE-Eec
Confidence 998887665554 678899999999999888 7889999999999999999999999998888887764 665 446
Q ss_pred CeeEEEEecCCeeeE-Eeec--------ccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcEEEEeecCCCCcceEE
Q 018248 158 KGQVRVEDYGTKKSK-YITA--------HASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRRGAERAEIYS 228 (359)
Q Consensus 158 d~~v~~~~~~~~~~~-~~~~--------~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~i~~ 228 (359)
||.|++|+.+...+. .+.+ ....+..++|+|+|..++....|+. |++|+..+++....+....+...+..
T Consensus 159 dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~-Vkvy~r~~we~~f~Lr~~~~ss~~~~ 237 (933)
T KOG1274|consen 159 DGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNT-VKVYSRKGWELQFKLRDKLSSSKFSD 237 (933)
T ss_pred CceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCe-EEEEccCCceeheeecccccccceEE
Confidence 999999998864332 2211 1345678999999888888888999 99999999999999887766667999
Q ss_pred EEecCCCCEEEEEcCCCcEEEEEccCCCCCCCCCccccCCCCCccCCCCCceeeeeEeeeecceEEecccceeEEeecCC
Q 018248 229 LAFSSNAQWLAASSDKGTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSAISSFRFIRGVLPKYFSSKWSMAQFRLPEN 308 (359)
Q Consensus 229 ~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (359)
++|+|+|+|||+++.||.|.|||+++-... .+..
T Consensus 238 ~~wsPnG~YiAAs~~~g~I~vWnv~t~~~~----------------------------------------------~~~~ 271 (933)
T KOG1274|consen 238 LQWSPNGKYIAASTLDGQILVWNVDTHERH----------------------------------------------EFKR 271 (933)
T ss_pred EEEcCCCcEEeeeccCCcEEEEecccchhc----------------------------------------------cccc
Confidence 999999999999999999999999974311 1224
Q ss_pred cEEEeeecccCCEEEEEecCCeEEEEE
Q 018248 309 VQYLVGFGRQNNTIVIVGLDGSYYKCE 335 (359)
Q Consensus 309 ~v~~~~~s~~~~~l~~~~~dg~i~v~~ 335 (359)
.|++++|.|+.+.|-.-...|...+|.
T Consensus 272 ~Vc~~aw~p~~n~it~~~~~g~~~~~~ 298 (933)
T KOG1274|consen 272 AVCCEAWKPNANAITLITALGTLGVSP 298 (933)
T ss_pred eeEEEecCCCCCeeEEEeeccccccCh
Confidence 677888888887777777777666553
No 105
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=9.8e-24 Score=154.93 Aligned_cols=244 Identities=13% Similarity=0.146 Sum_probs=188.0
Q ss_pred CCCCCceEEEEEccCCCEEEEec-CCceEEEEcCCCcce---eeeecccCCCCceeEEEEeccC--CEEEEEecCCCCCC
Q 018248 3 QPDPITIHHLALNQDHGCFATGT-ETGFRVYLSDPYKPI---MRRDFDRNPRGGTQLVSMLFRS--NIICLVNSGPHQSN 76 (359)
Q Consensus 3 ~~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~---~~~~~~~~h~~~v~~~~~~~~~--~~~~~~~~~~~~d~ 76 (359)
..|++.|+|.+|||+|+++|+|+ |+.|++...+..... ...+|. -|.+.+..++|..++ ...++++++. .|.
T Consensus 86 khhkgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~n-mhdgtirdl~fld~~~s~~~il~s~ga-gdc 163 (350)
T KOG0641|consen 86 KHHKGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFN-MHDGTIRDLAFLDDPESGGAILASAGA-GDC 163 (350)
T ss_pred cccCccEEEEEecCccCeEEecCCCceEEEEecccccccccCcceeee-ecCCceeeeEEecCCCcCceEEEecCC-Ccc
Confidence 35899999999999999999999 999998766532211 112232 589999999998554 3445555555 588
Q ss_pred eEEEEECCCccEEeeec-cCcceeEEEEecceeEEE---ecCeEEEEEcccceeeeeEecc-------CCCceeeeeecC
Q 018248 77 KVMIWDDHENRYLGELS-FRSEVKNVRLRRDRIVVV---LNQKVYVYNFTDLKLVDQIETV-------VNPTGLCDVSQN 145 (359)
Q Consensus 77 ~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~~~-------~~~~~~~~~~~~ 145 (359)
+|.+-|..+|+..+.+. |.+.|.++- +-++-.++ .|.+|+.||++-..++.++... ...+..+++.|.
T Consensus 164 ~iy~tdc~~g~~~~a~sghtghilaly-swn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdps 242 (350)
T KOG0641|consen 164 KIYITDCGRGQGFHALSGHTGHILALY-SWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPS 242 (350)
T ss_pred eEEEeecCCCCcceeecCCcccEEEEE-EecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCC
Confidence 99999999999999998 889888764 22444555 8999999999888777776431 234556677676
Q ss_pred CCccEEEecCCCCeeEEEEecCC-eeeEEeecccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCC--cEEEEeecCCC
Q 018248 146 AGPMVMACPGLLKGQVRVEDYGT-KKSKYITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDG--SLLQEMRRGAE 222 (359)
Q Consensus 146 ~~~~~l~~~g~~d~~v~~~~~~~-~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~--~~~~~~~~~~~ 222 (359)
+. +|++ |..|..+.+++.++ +.++.+..|...|.|+.|+|...|+++++.|.. |++-|++.. ..+..+....|
T Consensus 243 gr--ll~s-g~~dssc~lydirg~r~iq~f~phsadir~vrfsp~a~yllt~syd~~-ikltdlqgdla~el~~~vv~eh 318 (350)
T KOG0641|consen 243 GR--LLAS-GHADSSCMLYDIRGGRMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMK-IKLTDLQGDLAHELPIMVVAEH 318 (350)
T ss_pred cc--eeee-ccCCCceEEEEeeCCceeeeeCCCccceeEEEeCCCceEEEEecccce-EEEeecccchhhcCceEEEEec
Confidence 64 4776 88999999966654 788999999999999999999999999999999 999998532 12222222337
Q ss_pred CcceEEEEecCCCCEEEEEcCCCcEEEEEcc
Q 018248 223 RAEIYSLAFSSNAQWLAASSDKGTVHVFGLK 253 (359)
Q Consensus 223 ~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~ 253 (359)
...+..+.|+|..-.+++.+.|.++.+|-+.
T Consensus 319 kdk~i~~rwh~~d~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 319 KDKAIQCRWHPQDFSFISSSADKTATLWALN 349 (350)
T ss_pred cCceEEEEecCccceeeeccCcceEEEeccC
Confidence 7888999999998888999999999999764
No 106
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=5.5e-24 Score=163.37 Aligned_cols=262 Identities=11% Similarity=0.155 Sum_probs=196.6
Q ss_pred EEEEec-CCceEEEEcCCCc------ce----eeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEECCCccE
Q 018248 20 CFATGT-ETGFRVYLSDPYK------PI----MRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDDHENRY 88 (359)
Q Consensus 20 ~l~~~~-d~~i~iw~~~~~~------~~----~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~ 88 (359)
.|++|+ ...|.-+++.... .. ....+. .|.+.+.+++++ +. ++++++ .|.+|+|||+.+...
T Consensus 3 ~iIvGtYE~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~~-aH~~sitavAVs--~~--~~aSGs--sDetI~IYDm~k~~q 75 (362)
T KOG0294|consen 3 EIIVGTYEHVILGFKLDPEPKGCTDSVKPTLKPLFAFS-AHAGSITALAVS--GP--YVASGS--SDETIHIYDMRKRKQ 75 (362)
T ss_pred eEEEeeeeeEEEEEEeccCccccccccceeeecccccc-ccccceeEEEec--ce--eEeccC--CCCcEEEEeccchhh
Confidence 466777 7777777765322 11 112233 789999988873 34 444444 689999999999888
Q ss_pred Eeeec-cCcceeEEEEecce---eEEE--ecCeEEEEEcccceeeeeEeccCCCceeeeeecCCCccEEEecCCCCeeEE
Q 018248 89 LGELS-FRSEVKNVRLRRDR---IVVV--LNQKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAGPMVMACPGLLKGQVR 162 (359)
Q Consensus 89 ~~~~~-~~~~v~~~~~~~~~---~~~~--~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~v~ 162 (359)
+..+- |.+.|+++.|.+.. .++. .||.|.+|+......+..++.|.+.|+.++++|.++- .|.. +.|+.++
T Consensus 76 lg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KL-ALsV--g~D~~lr 152 (362)
T KOG0294|consen 76 LGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPSGKL-ALSV--GGDQVLR 152 (362)
T ss_pred hcceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeecccccccceeEecCCCce-EEEE--cCCceee
Confidence 88776 99999999998876 4444 9999999999999999999999999999999999873 3333 3599999
Q ss_pred EEecCCeeeEEeecccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcEEEEeecCCCCcceEEEEecCCCCEEEEEc
Q 018248 163 VEDYGTKKSKYITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSNAQWLAASS 242 (359)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~ 242 (359)
+|++-.........-....+.+.|+|.|.+++.+..++ |-+|.+.+......+.. +..+.++.|- ++..|++|+
T Consensus 153 ~WNLV~Gr~a~v~~L~~~at~v~w~~~Gd~F~v~~~~~--i~i~q~d~A~v~~~i~~---~~r~l~~~~l-~~~~L~vG~ 226 (362)
T KOG0294|consen 153 TWNLVRGRVAFVLNLKNKATLVSWSPQGDHFVVSGRNK--IDIYQLDNASVFREIEN---PKRILCATFL-DGSELLVGG 226 (362)
T ss_pred eehhhcCccceeeccCCcceeeEEcCCCCEEEEEeccE--EEEEecccHhHhhhhhc---cccceeeeec-CCceEEEec
Confidence 98764332222222233445599999999998888886 89999988877766663 3567777775 567889999
Q ss_pred CCCcEEEEEccCCCCCCCCCccccCCCCCccCCCCCceeeeeEeeeecceEEecccceeEEeecCCcEEEeee--cccCC
Q 018248 243 DKGTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSAISSFRFIRGVLPKYFSSKWSMAQFRLPENVQYLVGF--GRQNN 320 (359)
Q Consensus 243 ~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--s~~~~ 320 (359)
+|+.|.+||.+...+. ..+..|...|-.+.+ .|++.
T Consensus 227 d~~~i~~~D~ds~~~~------------------------------------------~~~~AH~~RVK~i~~~~~~~~~ 264 (362)
T KOG0294|consen 227 DNEWISLKDTDSDTPL------------------------------------------TEFLAHENRVKDIASYTNPEHE 264 (362)
T ss_pred CCceEEEeccCCCccc------------------------------------------eeeecchhheeeeEEEecCCce
Confidence 9999999999985532 113345566666664 56788
Q ss_pred EEEEEecCCeEEEEEeCCC
Q 018248 321 TIVIVGLDGSYYKCEFDPM 339 (359)
Q Consensus 321 ~l~~~~~dg~i~v~~~~~~ 339 (359)
+|+++++||.|+||+++.+
T Consensus 265 ~lvTaSSDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 265 YLVTASSDGFIKVWDIDME 283 (362)
T ss_pred EEEEeccCceEEEEEcccc
Confidence 9999999999999999876
No 107
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.94 E-value=8.1e-25 Score=174.71 Aligned_cols=232 Identities=16% Similarity=0.288 Sum_probs=186.3
Q ss_pred ceeEEEEeccCCEEEEEecCCCCCCeEEEEECCCccEEeeec-cCcceeEEEEecceeEEE---ecCeEEEEEcccceee
Q 018248 52 GTQLVSMLFRSNIICLVNSGPHQSNKVMIWDDHENRYLGELS-FRSEVKNVRLRRDRIVVV---LNQKVYVYNFTDLKLV 127 (359)
Q Consensus 52 ~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~ 127 (359)
.+..+...+..+.++..+ .|..+.++|...++.+..++ |...|+.+.++|+...+. .|..|++|........
T Consensus 221 gi~ald~~~s~~~ilTGG----~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~ 296 (506)
T KOG0289|consen 221 GITALDIIPSSSKILTGG----EDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEP 296 (506)
T ss_pred CeeEEeecCCCCcceecC----CCCceEEEecchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCc
Confidence 345555555534444444 68999999999999999998 999999999999987766 8999999999777777
Q ss_pred eeEeccCCCceeeeeecCCCccEEEecCCCCeeEEEEecC-CeeeEEeec--ccccccEEEEccCCcEEEEEeCCCCeEE
Q 018248 128 DQIETVVNPTGLCDVSQNAGPMVMACPGLLKGQVRVEDYG-TKKSKYITA--HASRIASIAMTLDGRFVATASSKGTLIR 204 (359)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~v~~~~~~-~~~~~~~~~--~~~~i~~~~~s~~~~~l~~~~~dg~~i~ 204 (359)
.....|..+++.+..+|.+++ +.+ .+.|+...+.+.+ +..+..... ..-.+++.+|+|||..+.+|..|+. |+
T Consensus 297 ~~~~~h~~~V~~ls~h~tgeY--lls-As~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~-vk 372 (506)
T KOG0289|consen 297 TSSRPHEEPVTGLSLHPTGEY--LLS-ASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGV-VK 372 (506)
T ss_pred cccccccccceeeeeccCCcE--EEE-ecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCce-EE
Confidence 778889999999999999987 444 4478988885444 444433332 2345899999999999999999999 99
Q ss_pred EEEcCCCcEEEEeecCCCCcceEEEEecCCCCEEEEEcCCCcEEEEEccCCCCCCCCCccccCCCCCccCCCCCceeeee
Q 018248 205 VFNTMDGSLLQEMRRGAERAEIYSLAFSSNAQWLAASSDKGTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSAISSFR 284 (359)
Q Consensus 205 iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (359)
|||+.+...+..|.+ |.++|..++|+.+|-+|+++++|+.|++||++.-+..+
T Consensus 373 iwdlks~~~~a~Fpg--ht~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~k------------------------- 425 (506)
T KOG0289|consen 373 IWDLKSQTNVAKFPG--HTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFK------------------------- 425 (506)
T ss_pred EEEcCCccccccCCC--CCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccc-------------------------
Confidence 999999999999987 88999999999999999999999999999999866321
Q ss_pred EeeeecceEEecccceeEEeecC-CcEEEeeecccCCEEEEEecCCeEEEEE
Q 018248 285 FIRGVLPKYFSSKWSMAQFRLPE-NVQYLVGFGRQNNTIVIVGLDGSYYKCE 335 (359)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~~~~~dg~i~v~~ 335 (359)
++.++. -.+.++.|.+.|.+|++++.|=.||++.
T Consensus 426 -----------------t~~l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~ 460 (506)
T KOG0289|consen 426 -----------------TIQLDEKKEVNSLSFDQSGTYLGIAGSDLQVYICK 460 (506)
T ss_pred -----------------eeeccccccceeEEEcCCCCeEEeecceeEEEEEe
Confidence 122222 2578899999999999998776666654
No 108
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=1e-24 Score=175.65 Aligned_cols=273 Identities=12% Similarity=0.146 Sum_probs=205.8
Q ss_pred CceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEECCCccEEee-eccCcceeEEEEec
Q 018248 27 TGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDDHENRYLGE-LSFRSEVKNVRLRR 105 (359)
Q Consensus 27 ~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~-~~~~~~v~~~~~~~ 105 (359)
..+.+||+.++.......-. +....-.... -.+++++.+.-. ...+.+|.+........ +-.+++|.+++-+|
T Consensus 18 ~~~~~~dl~TGt~~~~ykg~-~~a~~~sl~~--l~~~yllsaq~~---rp~l~vw~i~k~~~~~q~~v~Pg~v~al~s~n 91 (476)
T KOG0646|consen 18 INCIVWDLRTGTSLLQYKGS-YLAQAASLTA--LNNEYLLSAQLK---RPLLHVWEILKKDQVVQYIVLPGPVHALASSN 91 (476)
T ss_pred cceeEEecCCCceeEEecCc-ccccchhhhh--hchhheeeeccc---CccccccccCchhhhhhhcccccceeeeecCC
Confidence 45999999998766433210 0011111111 123555554443 36899999877655553 33789999999999
Q ss_pred ceeEEE---ecCeEEEEEcccceeeeeEeccCCCceeeeeecCCCccEEEecCCCCeeEEEEecC----------CeeeE
Q 018248 106 DRIVVV---LNQKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAGPMVMACPGLLKGQVRVEDYG----------TKKSK 172 (359)
Q Consensus 106 ~~~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~v~~~~~~----------~~~~~ 172 (359)
+|.+++ ..+.|++|.+.+|..+..+..|...++++.|+-|+.. +++ |+.||.|.+|... ..++.
T Consensus 92 ~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~--iiT-gskDg~V~vW~l~~lv~a~~~~~~~p~~ 168 (476)
T KOG0646|consen 92 LGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSH--IIT-GSKDGAVLVWLLTDLVSADNDHSVKPLH 168 (476)
T ss_pred CceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcE--EEe-cCCCccEEEEEEEeecccccCCCcccee
Confidence 999998 6799999999999999999999999999999988875 665 7799999999764 35678
Q ss_pred EeecccccccEEEEccCC--cEEEEEeCCCCeEEEEEcCCCcEEEEeecCCCCcceEEEEecCCCCEEEEEcCCCcEEEE
Q 018248 173 YITAHASRIASIAMTLDG--RFVATASSKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSNAQWLAASSDKGTVHVF 250 (359)
Q Consensus 173 ~~~~~~~~i~~~~~s~~~--~~l~~~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw 250 (359)
.+..|.-+|+.+...+.| .+|+|+|.|.+ +++||+..+..+.++. .+..+.+++.+|-++.+..|+.+|.|.+.
T Consensus 169 ~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t-~k~wdlS~g~LLlti~---fp~si~av~lDpae~~~yiGt~~G~I~~~ 244 (476)
T KOG0646|consen 169 IFSDHTLSITDLQIGSGGTNARLYTASEDRT-IKLWDLSLGVLLLTIT---FPSSIKAVALDPAERVVYIGTEEGKIFQN 244 (476)
T ss_pred eeccCcceeEEEEecCCCccceEEEecCCce-EEEEEeccceeeEEEe---cCCcceeEEEcccccEEEecCCcceEEee
Confidence 889999999999988754 48999999999 9999999999998887 45789999999999999999999999998
Q ss_pred EccCCCCCCCCCccccCCCCCccCCCCCceeeeeEeeeecceEEecccceeEEeecCC--cEEEeeecccCCEEEEEecC
Q 018248 251 GLKVDSGSPGTSKLHSASEPNLSSKNSSAISSFRFIRGVLPKYFSSKWSMAQFRLPEN--VQYLVGFGRQNNTIVIVGLD 328 (359)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~s~~~~~l~~~~~d 328 (359)
++..-..... +.+ .+. +......+..+..+.+ .|++++.+-||..|++|+.|
T Consensus 245 ~~~~~~~~~~---------------~v~-------~k~----~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~d 298 (476)
T KOG0646|consen 245 LLFKLSGQSA---------------GVN-------QKG----RHEENTQINVLVGHENESAITCLAISTDGTLLLSGDED 298 (476)
T ss_pred ehhcCCcccc---------------ccc-------ccc----cccccceeeeeccccCCcceeEEEEecCccEEEeeCCC
Confidence 8876542100 000 000 0001112223445555 89999999999999999999
Q ss_pred CeEEEEEeCC
Q 018248 329 GSYYKCEFDP 338 (359)
Q Consensus 329 g~i~v~~~~~ 338 (359)
|+|.||++..
T Consensus 299 g~VcvWdi~S 308 (476)
T KOG0646|consen 299 GKVCVWDIYS 308 (476)
T ss_pred CCEEEEecch
Confidence 9999998865
No 109
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=2.4e-24 Score=165.46 Aligned_cols=274 Identities=14% Similarity=0.166 Sum_probs=198.2
Q ss_pred eEEEEEccCCCEEEEec-CCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEECCCcc
Q 018248 9 IHHLALNQDHGCFATGT-ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDDHENR 87 (359)
Q Consensus 9 v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~ 87 (359)
-.|+.||+.|.+||+|. ||.|.|||+.+.... +.+. +|..+|.+++|+.++..++.++ .|..|.+||+..|.
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~ia--r~ls-aH~~pi~sl~WS~dgr~LltsS----~D~si~lwDl~~gs 98 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIA--RMLS-AHVRPITSLCWSRDGRKLLTSS----RDWSIKLWDLLKGS 98 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchh--hhhh-ccccceeEEEecCCCCEeeeec----CCceeEEEeccCCC
Confidence 68999999999999999 999999999987643 4454 8999999999999999999888 89999999999999
Q ss_pred EEeeeccCcceeEEEEecce--eEEE--ecCeEEEEEcccceeeeeE-ec-cCCCc----eeeeeecCCCccEEEecCCC
Q 018248 88 YLGELSFRSEVKNVRLRRDR--IVVV--LNQKVYVYNFTDLKLVDQI-ET-VVNPT----GLCDVSQNAGPMVMACPGLL 157 (359)
Q Consensus 88 ~~~~~~~~~~v~~~~~~~~~--~~~~--~d~~i~i~d~~~~~~~~~~-~~-~~~~~----~~~~~~~~~~~~~l~~~g~~ 157 (359)
+++.+.++.+|+...|+|.. +.++ .+..-.+.++..+ .+.+ .. ..... ....+.+.|+ ++.+ |..
T Consensus 99 ~l~rirf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~--~h~~Lp~d~d~dln~sas~~~fdr~g~--yIit-Gts 173 (405)
T KOG1273|consen 99 PLKRIRFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDP--KHSVLPKDDDGDLNSSASHGVFDRRGK--YIIT-GTS 173 (405)
T ss_pred ceeEEEccCccceeeeccccCCeEEEEEecCCcEEEEecCC--ceeeccCCCccccccccccccccCCCC--EEEE-ecC
Confidence 99999999999999999954 4444 4554555555432 2222 11 11111 1122444454 4665 777
Q ss_pred CeeEEEEecC-CeeeEEeeccc-ccccEEEEccCCcEEEEEeCCCCeEEEEEcCCC-------cE--EEEeecCCCCcce
Q 018248 158 KGQVRVEDYG-TKKSKYITAHA-SRIASIAMTLDGRFVATASSKGTLIRVFNTMDG-------SL--LQEMRRGAERAEI 226 (359)
Q Consensus 158 d~~v~~~~~~-~~~~~~~~~~~-~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~-------~~--~~~~~~~~~~~~i 226 (359)
.|.+.+++.. .+++..++... ..|..+.++..|++|+.-+.|.. |+.|+++.- +. .+.+..-.....-
T Consensus 174 KGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRv-IR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~W 252 (405)
T KOG1273|consen 174 KGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRV-IRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQW 252 (405)
T ss_pred cceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecCCce-EEEEehhhhcccCccCCcChhHHHHHHHhhhhh
Confidence 8999986554 46666665544 78899999999999999999999 999998631 11 1112111122345
Q ss_pred EEEEecCCCCEEEEEcC-CCcEEEEEccCCCCCCCCCccccCCCCCccCCCCCceeeeeEeeeecceEEecccceeEEee
Q 018248 227 YSLAFSSNAQWLAASSD-KGTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSAISSFRFIRGVLPKYFSSKWSMAQFRL 305 (359)
Q Consensus 227 ~~~~~s~~~~~l~~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (359)
.+++||.+|.|++.++. ...++||.-..+.- -+.+. .
T Consensus 253 k~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsL---------------------------------VKILh---------G 290 (405)
T KOG1273|consen 253 KKCCFSGDGEYVCAGSARAHALYIWEKSIGSL---------------------------------VKILH---------G 290 (405)
T ss_pred hheeecCCccEEEeccccceeEEEEecCCcce---------------------------------eeeec---------C
Confidence 67899999999987774 35699999888762 12222 1
Q ss_pred cC-CcEEEeeecccCCEEEEEecCCeEEEEEeCC
Q 018248 306 PE-NVQYLVGFGRQNNTIVIVGLDGSYYKCEFDP 338 (359)
Q Consensus 306 ~~-~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~ 338 (359)
+. .....+.|+|-...|++- +.|.+++|....
T Consensus 291 ~kgE~l~DV~whp~rp~i~si-~sg~v~iw~~~~ 323 (405)
T KOG1273|consen 291 TKGEELLDVNWHPVRPIIASI-ASGVVYIWAVVQ 323 (405)
T ss_pred Cchhheeecccccceeeeeec-cCCceEEEEeec
Confidence 22 345678899987777776 889999998754
No 110
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.94 E-value=2.3e-24 Score=164.54 Aligned_cols=228 Identities=17% Similarity=0.196 Sum_probs=182.1
Q ss_pred CCCCCceEEEEEccCCCEEEEec-CCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEE
Q 018248 3 QPDPITIHHLALNQDHGCFATGT-ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIW 81 (359)
Q Consensus 3 ~~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iw 81 (359)
+.|.++|.+++|+.||..+++|+ |+.+++||+.+++... +. .|.++|..+.|....++-.++.++ .|.+|++|
T Consensus 69 ~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q~~~---v~-~Hd~pvkt~~wv~~~~~~cl~TGS--WDKTlKfW 142 (347)
T KOG0647|consen 69 QSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQVSQ---VA-AHDAPVKTCHWVPGMNYQCLVTGS--WDKTLKFW 142 (347)
T ss_pred hccCCCeEEEEEccCCceEEeeccCCceEEEEccCCCeee---ee-ecccceeEEEEecCCCcceeEecc--cccceeec
Confidence 57899999999999999999999 9999999999875432 22 599999999999888766666655 89999999
Q ss_pred ECCCccEEeeeccCcceeEEEEecceeEEE-ecCeEEEEEcccceee-eeEe-ccCCCceeeeeecCCCccEEEecCCCC
Q 018248 82 DDHENRYLGELSFRSEVKNVRLRRDRIVVV-LNQKVYVYNFTDLKLV-DQIE-TVVNPTGLCDVSQNAGPMVMACPGLLK 158 (359)
Q Consensus 82 d~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~d~~i~i~d~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~l~~~g~~d 158 (359)
|.+...++.++..++.+.++..-..-..++ .++.|.+|+++.+... +.++ ...-.+.++++..+.+...| |+-.
T Consensus 143 D~R~~~pv~t~~LPeRvYa~Dv~~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~al---GsiE 219 (347)
T KOG0647|consen 143 DTRSSNPVATLQLPERVYAADVLYPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFAL---GSIE 219 (347)
T ss_pred ccCCCCeeeeeeccceeeehhccCceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEe---eeec
Confidence 999999999999999999988766555556 9999999999655322 2221 12334678888888887543 6679
Q ss_pred eeEEE-EecCC--eeeEEeecccc---------cccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcEEEEeecCCCCcce
Q 018248 159 GQVRV-EDYGT--KKSKYITAHAS---------RIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRRGAERAEI 226 (359)
Q Consensus 159 ~~v~~-~~~~~--~~~~~~~~~~~---------~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~i 226 (359)
|.+.+ +.... +.-..++.|.. .|++++|+|.-..|+|++.||+ ..+||-.....+++.+. +..+|
T Consensus 220 Grv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGt-f~FWDkdar~kLk~s~~--~~qpI 296 (347)
T KOG0647|consen 220 GRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGT-FSFWDKDARTKLKTSET--HPQPI 296 (347)
T ss_pred ceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEeecccceEEEecCCce-EEEecchhhhhhhccCc--CCCcc
Confidence 99998 44333 44455666652 5788999999889999999999 99999877777777766 78899
Q ss_pred EEEEecCCCCEEEEEc
Q 018248 227 YSLAFSSNAQWLAASS 242 (359)
Q Consensus 227 ~~~~~s~~~~~l~~~~ 242 (359)
++..|+.+|.+++-+.
T Consensus 297 tcc~fn~~G~ifaYA~ 312 (347)
T KOG0647|consen 297 TCCSFNRNGSIFAYAL 312 (347)
T ss_pred ceeEecCCCCEEEEEe
Confidence 9999999999987653
No 111
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.94 E-value=4.8e-25 Score=179.70 Aligned_cols=241 Identities=14% Similarity=0.205 Sum_probs=172.6
Q ss_pred CCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEECCCc----cEEeeec--cCcceeEEEEecceeEEE---ecCeEEE
Q 018248 48 NPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDDHEN----RYLGELS--FRSEVKNVRLRRDRIVVV---LNQKVYV 118 (359)
Q Consensus 48 ~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~----~~~~~~~--~~~~v~~~~~~~~~~~~~---~d~~i~i 118 (359)
+|+..|..+++.+.+..++..+ .|..|++||+... +..+.+. ....|++++|++.+..++ .....++
T Consensus 165 hgtk~Vsal~~Dp~GaR~~sGs----~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqakl 240 (641)
T KOG0772|consen 165 HGTKIVSALAVDPSGARFVSGS----LDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQAKL 240 (641)
T ss_pred CCceEEEEeeecCCCceeeecc----ccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcceeE
Confidence 6777888888877776666555 7999999997643 2233333 446799999999876555 6778899
Q ss_pred EEcccceeeee------------EeccCCCceeeeeecCCCccEEEecCCCCeeEEEEecCC--eeeEEee-----cccc
Q 018248 119 YNFTDLKLVDQ------------IETVVNPTGLCDVSQNAGPMVMACPGLLKGQVRVEDYGT--KKSKYIT-----AHAS 179 (359)
Q Consensus 119 ~d~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~v~~~~~~~--~~~~~~~-----~~~~ 179 (359)
+|-...+.... -++|...+++.+|+|..+..+|.+ +.||++++|+.+. ...+.++ +..-
T Consensus 241 ~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~--s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv 318 (641)
T KOG0772|consen 241 LDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTC--SYDGTLRIWDVNNTKSQLQVIKTKPAGGKRV 318 (641)
T ss_pred EccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEe--cCCCcEEEEecCCchhheeEEeeccCCCccc
Confidence 99643333222 235666778889999999877764 4899999999875 2233332 3345
Q ss_pred cccEEEEccCCcEEEEEeCCCCeEEEEEcCCCc--EEEEeecCCCCc--ceEEEEecCCCCEEEEEcCCCcEEEEEccCC
Q 018248 180 RIASIAMTLDGRFVATASSKGTLIRVFNTMDGS--LLQEMRRGAERA--EIYSLAFSSNAQWLAASSDKGTVHVFGLKVD 255 (359)
Q Consensus 180 ~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~--~~~~~~~~~~~~--~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~ 255 (359)
+++.++|+|||++||+|+.||. |.+|+..... +...++ ..|.. .|++++||+||++|++-+.|+++++||++..
T Consensus 319 ~~tsC~~nrdg~~iAagc~DGS-IQ~W~~~~~~v~p~~~vk-~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~ 396 (641)
T KOG0772|consen 319 PVTSCAWNRDGKLIAAGCLDGS-IQIWDKGSRTVRPVMKVK-DAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQF 396 (641)
T ss_pred CceeeecCCCcchhhhcccCCc-eeeeecCCcccccceEee-eccCCCCceeEEEeccccchhhhccCCCceeeeecccc
Confidence 7899999999999999999999 9999975432 222222 22444 8999999999999999999999999999987
Q ss_pred CCCCCCCccccCCCCCccCCCCCceeeeeEeeeecceEEecccceeEEeecCCcEEEeeecccCCEEEEEec------CC
Q 018248 256 SGSPGTSKLHSASEPNLSSKNSSAISSFRFIRGVLPKYFSSKWSMAQFRLPENVQYLVGFGRQNNTIVIVGL------DG 329 (359)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~------dg 329 (359)
++.- . ...-++.++ .-+.++|||+.+.|++|+. .|
T Consensus 397 kkpL------------------------~-~~tgL~t~~--------------~~tdc~FSPd~kli~TGtS~~~~~~~g 437 (641)
T KOG0772|consen 397 KKPL------------------------N-VRTGLPTPF--------------PGTDCCFSPDDKLILTGTSAPNGMTAG 437 (641)
T ss_pred ccch------------------------h-hhcCCCccC--------------CCCccccCCCceEEEecccccCCCCCc
Confidence 6321 0 000011111 2256899999999999986 46
Q ss_pred eEEEEE
Q 018248 330 SYYKCE 335 (359)
Q Consensus 330 ~i~v~~ 335 (359)
++++|+
T Consensus 438 ~L~f~d 443 (641)
T KOG0772|consen 438 TLFFFD 443 (641)
T ss_pred eEEEEe
Confidence 677664
No 112
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.94 E-value=8.4e-24 Score=181.72 Aligned_cols=191 Identities=15% Similarity=0.162 Sum_probs=152.4
Q ss_pred ceeEEEEecceeEEE---ecCeEEEEEcccceeeeeE---eccCCCceeeeeecCCCccEEEecCCCCeeEEEEecCCee
Q 018248 97 EVKNVRLRRDRIVVV---LNQKVYVYNFTDLKLVDQI---ETVVNPTGLCDVSQNAGPMVMACPGLLKGQVRVEDYGTKK 170 (359)
Q Consensus 97 ~v~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~v~~~~~~~~~ 170 (359)
.+++++.++.|++.+ ..|.|-+|++++|-....+ +.|..++..++. |+.+..+++ ++.+|.+.+|+...+.
T Consensus 450 ~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~--D~~n~~~vs-a~~~Gilkfw~f~~k~ 526 (910)
T KOG1539|consen 450 NATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAV--DGTNRLLVS-AGADGILKFWDFKKKV 526 (910)
T ss_pred ceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEe--cCCCceEEE-ccCcceEEEEecCCcc
Confidence 356667777777666 6888999998888777776 456676665555 444445666 5579999999999877
Q ss_pred eEEeecccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcEEEEeecCCCCcceEEEEecCCCCEEEEEcCCCcEEEE
Q 018248 171 SKYITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSNAQWLAASSDKGTVHVF 250 (359)
Q Consensus 171 ~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw 250 (359)
+..--.-...+.++..+.....++.+..|-. |+++|..+.+.+++|.+ |...|++++|||||++|++++.|++|++|
T Consensus 527 l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~-I~vvD~~t~kvvR~f~g--h~nritd~~FS~DgrWlisasmD~tIr~w 603 (910)
T KOG1539|consen 527 LKKSLRLGSSITGIVYHRVSDLLAIALDDFS-IRVVDVVTRKVVREFWG--HGNRITDMTFSPDGRWLISASMDSTIRTW 603 (910)
T ss_pred eeeeeccCCCcceeeeeehhhhhhhhcCcee-EEEEEchhhhhhHHhhc--cccceeeeEeCCCCcEEEEeecCCcEEEE
Confidence 5544445677889999988889999999998 99999999999999998 78899999999999999999999999999
Q ss_pred EccCCCCCCCCCccccCCCCCccCCCCCceeeeeEeeeecceEEecccceeEEeecCCcEEEeeecccCCEEEEEecC-C
Q 018248 251 GLKVDSGSPGTSKLHSASEPNLSSKNSSAISSFRFIRGVLPKYFSSKWSMAQFRLPENVQYLVGFGRQNNTIVIVGLD-G 329 (359)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-g 329 (359)
|+.++... +.+ .+ ..+...+.|+|+|.+||++..| .
T Consensus 604 Dlpt~~lI---------------------------------D~~---------~v-d~~~~sls~SPngD~LAT~Hvd~~ 640 (910)
T KOG1539|consen 604 DLPTGTLI---------------------------------DGL---------LV-DSPCTSLSFSPNGDFLATVHVDQN 640 (910)
T ss_pred eccCccee---------------------------------eeE---------ec-CCcceeeEECCCCCEEEEEEecCc
Confidence 99998732 111 11 2356789999999999999998 5
Q ss_pred eEEEEEe
Q 018248 330 SYYKCEF 336 (359)
Q Consensus 330 ~i~v~~~ 336 (359)
-|++|.-
T Consensus 641 gIylWsN 647 (910)
T KOG1539|consen 641 GIYLWSN 647 (910)
T ss_pred eEEEEEc
Confidence 6999963
No 113
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=5.8e-25 Score=187.29 Aligned_cols=282 Identities=14% Similarity=0.224 Sum_probs=210.0
Q ss_pred CCceEEEEEccCCCEEEEecCCceEEEEcCCCcce--eeeecccCCCC--ceeEEEEe-ccCCEEEEEecCCCCCCeEEE
Q 018248 6 PITIHHLALNQDHGCFATGTETGFRVYLSDPYKPI--MRRDFDRNPRG--GTQLVSML-FRSNIICLVNSGPHQSNKVMI 80 (359)
Q Consensus 6 ~~~v~~~~~s~~g~~l~~~~d~~i~iw~~~~~~~~--~~~~~~~~h~~--~v~~~~~~-~~~~~~~~~~~~~~~d~~i~i 80 (359)
+....+|+.+++-..+++++...++||..++.... +...+...... ....+.|. ...+.+++++ ..|.|.+
T Consensus 39 k~~~nAIs~nr~~~qiv~AGrs~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s----~nG~i~v 114 (839)
T KOG0269|consen 39 KAKANAISVNRDINQIVVAGRSLLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCS----TNGVISV 114 (839)
T ss_pred ccccceEeecCCcceeEEecccceeeEeeCcccCCcceeeecccccceeeehhhcccccchhhhheeec----CCCcEEE
Confidence 45677888999999999999888999988754322 22221100011 11223333 2346777777 6799999
Q ss_pred EECCC---ccEEeeec-cCcceeEEEEecceeEEE----ecCeEEEEEcccceeeeeEeccCCCceeeeeecCCCccEEE
Q 018248 81 WDDHE---NRYLGELS-FRSEVKNVRLRRDRIVVV----LNQKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAGPMVMA 152 (359)
Q Consensus 81 wd~~~---~~~~~~~~-~~~~v~~~~~~~~~~~~~----~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 152 (359)
||+.. .+.+..+. |+..+.++.|++....++ .||.|++||++..+...++.+....+..+.|+|..... ++
T Consensus 115 Wdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~-F~ 193 (839)
T KOG0269|consen 115 WDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGNK-FA 193 (839)
T ss_pred EecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccccchhhhceeeccCCCce-EE
Confidence 99987 56666777 999999999998765444 89999999999888888888888889999999988653 34
Q ss_pred ecCCCCeeEEEEecCC--eeeEEeecccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcE--EEEeecCCCCcceEE
Q 018248 153 CPGLLKGQVRVEDYGT--KKSKYITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSL--LQEMRRGAERAEIYS 228 (359)
Q Consensus 153 ~~g~~d~~v~~~~~~~--~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~--~~~~~~~~~~~~i~~ 228 (359)
+ +.+.|.+++|+++. +....+.+|.++|.|+.|+|++.+||||+.|+. |+|||+.+.+. +.++. ...++.+
T Consensus 194 s-~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~-vkiWd~t~~~~~~~~tIn---Tiapv~r 268 (839)
T KOG0269|consen 194 S-IHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKM-VKIWDMTDSRAKPKHTIN---TIAPVGR 268 (839)
T ss_pred E-ecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCcc-EEEEeccCCCccceeEEe---ecceeee
Confidence 3 66889999999886 566778899999999999999999999999999 99999876543 34444 3468999
Q ss_pred EEecCCCCE-EEEEc--CCCcEEEEEccCCCCCCCCCccccCCCCCccCCCCCceeeeeEeeeecceEEecccceeEEee
Q 018248 229 LAFSSNAQW-LAASS--DKGTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSAISSFRFIRGVLPKYFSSKWSMAQFRL 305 (359)
Q Consensus 229 ~~~s~~~~~-l~~~~--~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (359)
+.|-|+.++ |++++ .|-.|+|||++.+- +| ++.+.-
T Consensus 269 VkWRP~~~~hLAtcsmv~dtsV~VWDvrRPY---------------------------------IP--------~~t~~e 307 (839)
T KOG0269|consen 269 VKWRPARSYHLATCSMVVDTSVHVWDVRRPY---------------------------------IP--------YATFLE 307 (839)
T ss_pred eeeccCccchhhhhhccccceEEEEeecccc---------------------------------cc--------ceeeec
Confidence 999998765 56655 57789999998753 22 122333
Q ss_pred cCCcEEEeeecc-cCCEEEEEecCCeEEEEEeCC
Q 018248 306 PENVQYLVGFGR-QNNTIVIVGLDGSYYKCEFDP 338 (359)
Q Consensus 306 ~~~~v~~~~~s~-~~~~l~~~~~dg~i~v~~~~~ 338 (359)
|...++.++|.. |...+.+++.||.|..-.++.
T Consensus 308 H~~~vt~i~W~~~d~~~l~s~sKD~tv~qh~~kn 341 (839)
T KOG0269|consen 308 HTDSVTGIAWDSGDRINLWSCSKDGTVLQHLFKN 341 (839)
T ss_pred cCccccceeccCCCceeeEeecCccHHHHhhhhc
Confidence 456778888855 556788888888887655543
No 114
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.93 E-value=4.3e-24 Score=171.76 Aligned_cols=233 Identities=17% Similarity=0.206 Sum_probs=184.6
Q ss_pred CCCCceEEEEEccCCCEEEEec-CCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEE
Q 018248 4 PDPITIHHLALNQDHGCFATGT-ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWD 82 (359)
Q Consensus 4 ~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd 82 (359)
.|...|.+++.|+||++||+|+ |..|.||+.++.+.. ..+. +|.+.|..++|....+.++.++ .|+.|++|+
T Consensus 200 ~h~keil~~avS~Dgkylatgg~d~~v~Iw~~~t~ehv--~~~~-ghr~~V~~L~fr~gt~~lys~s----~Drsvkvw~ 272 (479)
T KOG0299|consen 200 GHVKEILTLAVSSDGKYLATGGRDRHVQIWDCDTLEHV--KVFK-GHRGAVSSLAFRKGTSELYSAS----ADRSVKVWS 272 (479)
T ss_pred cccceeEEEEEcCCCcEEEecCCCceEEEecCcccchh--hccc-ccccceeeeeeecCccceeeee----cCCceEEEe
Confidence 4778999999999999999999 999999999987776 4455 9999999999998888888777 799999999
Q ss_pred CCCccEEeeec-cCcceeEEEEecceeEEE---ecCeEEEEEcccceeeeeEeccCCCceeeeeecCCCccEEEecCCCC
Q 018248 83 DHENRYLGELS-FRSEVKNVRLRRDRIVVV---LNQKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAGPMVMACPGLLK 158 (359)
Q Consensus 83 ~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d 158 (359)
+.....+.++- |++.|.++....-++.+. .|+++++|++... ....+.++...+.+++|--+.. +++ |+.+
T Consensus 273 ~~~~s~vetlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~ee-sqlifrg~~~sidcv~~In~~H---fvs-GSdn 347 (479)
T KOG0299|consen 273 IDQLSYVETLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEE-SQLIFRGGEGSIDCVAFINDEH---FVS-GSDN 347 (479)
T ss_pred hhHhHHHHHHhCCccceeeechhcccceEEeccccceeEEEecccc-ceeeeeCCCCCeeeEEEecccc---eee-ccCC
Confidence 99888887776 999999999887777666 8999999999433 3334566777788888865543 555 8899
Q ss_pred eeEEEEecCC-eeeEEee-c-----------ccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCC----cEEEEeecCC
Q 018248 159 GQVRVEDYGT-KKSKYIT-A-----------HASRIASIAMTLDGRFVATASSKGTLIRVFNTMDG----SLLQEMRRGA 221 (359)
Q Consensus 159 ~~v~~~~~~~-~~~~~~~-~-----------~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~----~~~~~~~~~~ 221 (359)
|.|.+|.... +++.+.. + +..+|++++..|...++|+|+.+|. |++|-+..+ +++..+.
T Consensus 348 G~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~-vrLW~i~~g~r~i~~l~~ls--- 423 (479)
T KOG0299|consen 348 GSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGC-VRLWKIEDGLRAINLLYSLS--- 423 (479)
T ss_pred ceEEEeeecccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCc-eEEEEecCCccccceeeecc---
Confidence 9999988764 3333321 1 1238999999999999999999999 999999877 3455554
Q ss_pred CCcceEEEEecCCCCEEEEE-cCCCcEEEEEc
Q 018248 222 ERAEIYSLAFSSNAQWLAAS-SDKGTVHVFGL 252 (359)
Q Consensus 222 ~~~~i~~~~~s~~~~~l~~~-~~dg~i~iw~~ 252 (359)
-.+.|++++|+++|+.|++| +....+-=|-.
T Consensus 424 ~~GfVNsl~f~~sgk~ivagiGkEhRlGRW~~ 455 (479)
T KOG0299|consen 424 LVGFVNSLAFSNSGKRIVAGIGKEHRLGRWWC 455 (479)
T ss_pred cccEEEEEEEccCCCEEEEecccccccceeeE
Confidence 45799999999999976665 33433433433
No 115
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.93 E-value=1.1e-22 Score=174.99 Aligned_cols=321 Identities=15% Similarity=0.154 Sum_probs=222.3
Q ss_pred CCCCCceEEEEEccCCCEEEEec-CCceEEEEcCCCcceeeeecccCCC-CceeEEEEeccCCEEEEEecCCCCCCeEEE
Q 018248 3 QPDPITIHHLALNQDHGCFATGT-ETGFRVYLSDPYKPIMRRDFDRNPR-GGTQLVSMLFRSNIICLVNSGPHQSNKVMI 80 (359)
Q Consensus 3 ~~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~h~-~~v~~~~~~~~~~~~~~~~~~~~~d~~i~i 80 (359)
+.+...|+++.=+|-=..+|.|. +|+|.|+++..++.+ .+|+ |. +.|..++|..+++.+..+++ ..|.+.+
T Consensus 199 ~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil--~sFk--~d~g~VtslSFrtDG~p~las~~---~~G~m~~ 271 (910)
T KOG1539|consen 199 QEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKIL--MSFK--QDWGRVTSLSFRTDGNPLLASGR---SNGDMAF 271 (910)
T ss_pred cccccceeEeccCCcceEEEEeccCceEEEEEcccCcEE--EEEE--ccccceeEEEeccCCCeeEEecc---CCceEEE
Confidence 45778999999999999999999 999999999987776 4443 44 89999999988988776665 3599999
Q ss_pred EECCCccEEeeec--cCcceeEEEEecceeEEE---ecCeEEEEEccc--c--eeeeeEeccCCCceeeeeecCCCccEE
Q 018248 81 WDDHENRYLGELS--FRSEVKNVRLRRDRIVVV---LNQKVYVYNFTD--L--KLVDQIETVVNPTGLCDVSQNAGPMVM 151 (359)
Q Consensus 81 wd~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~---~d~~i~i~d~~~--~--~~~~~~~~~~~~~~~~~~~~~~~~~~l 151 (359)
||++..+.+..+. |.+.|....|.|....++ .|+.+++|-..+ | +.++.-.+|..+..++.+.-..... +
T Consensus 272 wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~-i 350 (910)
T KOG1539|consen 272 WDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHF-I 350 (910)
T ss_pred EEcCCCeeeeeeeccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEE-E
Confidence 9999988888776 888999999999888887 778777775532 2 3333434555555555544222111 1
Q ss_pred EecCCC-----------------------------------------------------------------CeeEEEEec
Q 018248 152 ACPGLL-----------------------------------------------------------------KGQVRVEDY 166 (359)
Q Consensus 152 ~~~g~~-----------------------------------------------------------------d~~v~~~~~ 166 (359)
.+ ... +..++.|+.
T Consensus 351 ls-a~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~ 429 (910)
T KOG1539|consen 351 LS-AKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNF 429 (910)
T ss_pred Ee-cccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEec
Confidence 11 112 223333444
Q ss_pred CCeee-EEeec------ccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcEEEEee-cCCCCcceEEEEecCCCCEE
Q 018248 167 GTKKS-KYITA------HASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMR-RGAERAEIYSLAFSSNAQWL 238 (359)
Q Consensus 167 ~~~~~-~~~~~------~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~~~~~~-~~~~~~~i~~~~~s~~~~~l 238 (359)
+.+.. +..-. ....+++++.++.|++.+.|+..|. |.+|++++|-....+- ...|.++|++++...-++.+
T Consensus 430 ~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~-Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~ 508 (910)
T KOG1539|consen 430 RNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGT-IDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLL 508 (910)
T ss_pred cCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCe-EEEEEcccCeeecccccCccccCceeEEEecCCCceE
Confidence 43332 11111 2357889999999999999999999 9999999999888883 23388999999999888999
Q ss_pred EEEcCCCcEEEEEccCCCCCCCCCccccC--CCCCc-cCCCC--CceeeeeEeeeecceEEecccceeEEeecCCcEEEe
Q 018248 239 AASSDKGTVHVFGLKVDSGSPGTSKLHSA--SEPNL-SSKNS--SAISSFRFIRGVLPKYFSSKWSMAQFRLPENVQYLV 313 (359)
Q Consensus 239 ~~~~~dg~i~iw~~~~~~~~~~~~~~~~~--~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 313 (359)
++++.+|.+++||.++...........+. ..... ..... ...-++.++.. ...+-...+..|.+.++.+
T Consensus 509 vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~------~t~kvvR~f~gh~nritd~ 582 (910)
T KOG1539|consen 509 VSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDV------VTRKVVREFWGHGNRITDM 582 (910)
T ss_pred EEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEc------hhhhhhHHhhccccceeee
Confidence 99999999999999987622111000000 00000 00000 00011111110 0112233477788999999
Q ss_pred eecccCCEEEEEecCCeEEEEEeCCC
Q 018248 314 GFGRQNNTIVIVGLDGSYYKCEFDPM 339 (359)
Q Consensus 314 ~~s~~~~~l~~~~~dg~i~v~~~~~~ 339 (359)
+|||||+.|++++.|++|++|+++..
T Consensus 583 ~FS~DgrWlisasmD~tIr~wDlpt~ 608 (910)
T KOG1539|consen 583 TFSPDGRWLISASMDSTIRTWDLPTG 608 (910)
T ss_pred EeCCCCcEEEEeecCCcEEEEeccCc
Confidence 99999999999999999999999874
No 116
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.93 E-value=6.2e-24 Score=170.64 Aligned_cols=254 Identities=13% Similarity=0.113 Sum_probs=184.1
Q ss_pred CCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEECCCccE----------Eeeec-cCcceeEEEEecc--eeEEE--e
Q 018248 48 NPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDDHENRY----------LGELS-FRSEVKNVRLRRD--RIVVV--L 112 (359)
Q Consensus 48 ~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~----------~~~~~-~~~~v~~~~~~~~--~~~~~--~ 112 (359)
-|.+.|.-+...|....++.... ..+.+.|||..+... -..+. |...-.+++|++. +.++. .
T Consensus 122 ~h~gEVnRaRymPQnp~iVAt~t---~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~ 198 (422)
T KOG0264|consen 122 NHDGEVNRARYMPQNPNIVATKT---SSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSD 198 (422)
T ss_pred cCCccchhhhhCCCCCcEEEecC---CCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccC
Confidence 47777777777765544433322 469999999654211 11333 7777788999885 44454 8
Q ss_pred cCeEEEEEcccc-------eeeeeEeccCCCceeeeeecCCCccEEEecCCCCeeEEEEecCC---eeeEEeeccccccc
Q 018248 113 NQKVYVYNFTDL-------KLVDQIETVVNPTGLCDVSQNAGPMVMACPGLLKGQVRVEDYGT---KKSKYITAHASRIA 182 (359)
Q Consensus 113 d~~i~i~d~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~v~~~~~~~---~~~~~~~~~~~~i~ 182 (359)
|++|.+||+... .+...+.+|...+..++|++..+.++.. .+.|+.+.||+.+. ++.....+|.+.|+
T Consensus 199 d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~s--v~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn 276 (422)
T KOG0264|consen 199 DHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGS--VGDDGKLMIWDTRSNTSKPSHSVKAHSAEVN 276 (422)
T ss_pred CCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhhee--ecCCCeEEEEEcCCCCCCCcccccccCCcee
Confidence 999999999532 2345667899999999999988874433 44799999988773 45566789999999
Q ss_pred EEEEccC-CcEEEEEeCCCCeEEEEEcCCC-cEEEEeecCCCCcceEEEEecCCC-CEEEEEcCCCcEEEEEccCCCCCC
Q 018248 183 SIAMTLD-GRFVATASSKGTLIRVFNTMDG-SLLQEMRRGAERAEIYSLAFSSNA-QWLAASSDKGTVHVFGLKVDSGSP 259 (359)
Q Consensus 183 ~~~~s~~-~~~l~~~~~dg~~i~iwd~~~~-~~~~~~~~~~~~~~i~~~~~s~~~-~~l~~~~~dg~i~iw~~~~~~~~~ 259 (359)
|++|+|- +..||+|+.|++ |++||+++. +++..+.. |...|.++.|||.. ..||+++.|+.+.|||+..-....
T Consensus 277 ~~~fnp~~~~ilAT~S~D~t-V~LwDlRnL~~~lh~~e~--H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq 353 (422)
T KOG0264|consen 277 CVAFNPFNEFILATGSADKT-VALWDLRNLNKPLHTFEG--HEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQ 353 (422)
T ss_pred EEEeCCCCCceEEeccCCCc-EEEeechhcccCceeccC--CCcceEEEEeCCCCCceeEecccCCcEEEEecccccccc
Confidence 9999994 558899999999 999999985 46777776 78899999999965 578999999999999998765332
Q ss_pred CCCccccCCCCCccCCCCCceeeeeEeeeecceEEecccceeEEeecCCcEEEeeecccC-CEEEEEecCCeEEEEEeC
Q 018248 260 GTSKLHSASEPNLSSKNSSAISSFRFIRGVLPKYFSSKWSMAQFRLPENVQYLVGFGRQN-NTIVIVGLDGSYYKCEFD 337 (359)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~v~~~~ 337 (359)
.. ... ..+ .|. .+..-..|...|....|.|+. -.|+++++|+.+.||++.
T Consensus 354 ~~------eda--------~dg--------ppE------llF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s 404 (422)
T KOG0264|consen 354 SP------EDA--------EDG--------PPE------LLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMA 404 (422)
T ss_pred Ch------hhh--------ccC--------Ccc------eeEEecCcccccccccCCCCCCeEEEEecCCceEEEeecc
Confidence 10 000 000 011 111123456778999999966 557888889999999876
No 117
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.93 E-value=2.3e-23 Score=159.52 Aligned_cols=225 Identities=18% Similarity=0.238 Sum_probs=178.3
Q ss_pred CCCCceEEEEEccCCCEEEEec-CCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEE
Q 018248 4 PDPITIHHLALNQDHGCFATGT-ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWD 82 (359)
Q Consensus 4 ~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd 82 (359)
.|..++.+++|.++ ..+++|+ ||.|+.+|++++...... .|..++.++...+..+.++..+ .|++|++||
T Consensus 52 ~~~~plL~c~F~d~-~~~~~G~~dg~vr~~Dln~~~~~~ig----th~~~i~ci~~~~~~~~vIsgs----WD~~ik~wD 122 (323)
T KOG1036|consen 52 KHGAPLLDCAFADE-STIVTGGLDGQVRRYDLNTGNEDQIG----THDEGIRCIEYSYEVGCVISGS----WDKTIKFWD 122 (323)
T ss_pred ecCCceeeeeccCC-ceEEEeccCceEEEEEecCCcceeec----cCCCceEEEEeeccCCeEEEcc----cCccEEEEe
Confidence 47899999999985 4566666 999999999987665333 4899999999988777777666 899999999
Q ss_pred CCCccEEeeeccCcceeEEEEecceeEEE-ecCeEEEEEcccceeeeeEe--ccCCCceeeeeecCCCccEEEecCCCCe
Q 018248 83 DHENRYLGELSFRSEVKNVRLRRDRIVVV-LNQKVYVYNFTDLKLVDQIE--TVVNPTGLCDVSQNAGPMVMACPGLLKG 159 (359)
Q Consensus 83 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~d~~i~i~d~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~g~~d~ 159 (359)
.........+.....|.++....+..++. .+..+.+||+++.....+.. ...-.+.++++-|++.+ .++ ++-+|
T Consensus 123 ~R~~~~~~~~d~~kkVy~~~v~g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eG--y~~-sSieG 199 (323)
T KOG1036|consen 123 PRNKVVVGTFDQGKKVYCMDVSGNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEG--YVV-SSIEG 199 (323)
T ss_pred ccccccccccccCceEEEEeccCCEEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCc--eEE-Eeecc
Confidence 98877777777777999999988777775 99999999998765443222 12335678888897777 444 55799
Q ss_pred eEEE-EecCC----eeeEEeecccc---------cccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcEEEEeecCCCCcc
Q 018248 160 QVRV-EDYGT----KKSKYITAHAS---------RIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRRGAERAE 225 (359)
Q Consensus 160 ~v~~-~~~~~----~~~~~~~~~~~---------~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~ 225 (359)
.|.+ +-... .....++.|.. +|++++|+|--..||||+.||. |.+||+.+.+.+.++.. .+..
T Consensus 200 RVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~-V~~Wd~~~rKrl~q~~~--~~~S 276 (323)
T KOG1036|consen 200 RVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGI-VNIWDLFNRKRLKQLAK--YETS 276 (323)
T ss_pred eEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccceEEecCCCce-EEEccCcchhhhhhccC--CCCc
Confidence 9999 33222 23344566642 7999999999889999999999 99999999999988876 5678
Q ss_pred eEEEEecCCCCEEEEEcC
Q 018248 226 IYSLAFSSNAQWLAASSD 243 (359)
Q Consensus 226 i~~~~~s~~~~~l~~~~~ 243 (359)
|.+++|+.||..||.++.
T Consensus 277 I~slsfs~dG~~LAia~s 294 (323)
T KOG1036|consen 277 ISSLSFSMDGSLLAIASS 294 (323)
T ss_pred eEEEEeccCCCeEEEEec
Confidence 999999999999999873
No 118
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.93 E-value=4.9e-22 Score=161.91 Aligned_cols=316 Identities=15% Similarity=0.196 Sum_probs=209.6
Q ss_pred CCCCCceEEEEEccCCCEEEEecCCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEE
Q 018248 3 QPDPITIHHLALNQDHGCFATGTETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWD 82 (359)
Q Consensus 3 ~~h~~~v~~~~~s~~g~~l~~~~d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd 82 (359)
+..+.-|.|++|.++|..+..-++|.|.||+..+.+.. +... .|.+.|.++++.-++..+- ++ .|..|..||
T Consensus 243 k~ekk~Vl~v~F~engdviTgDS~G~i~Iw~~~~~~~~--k~~~-aH~ggv~~L~~lr~GtllS---Gg--KDRki~~Wd 314 (626)
T KOG2106|consen 243 KREKKFVLCVTFLENGDVITGDSGGNILIWSKGTNRIS--KQVH-AHDGGVFSLCMLRDGTLLS---GG--KDRKIILWD 314 (626)
T ss_pred cccceEEEEEEEcCCCCEEeecCCceEEEEeCCCceEE--eEee-ecCCceEEEEEecCccEee---cC--ccceEEecc
Confidence 34457899999999998665545999999998654332 2222 7999999999987665443 44 689999998
Q ss_pred CCCccEEee------------------------------------------eccCcceeEEEEecceeEEE---ecCeEE
Q 018248 83 DHENRYLGE------------------------------------------LSFRSEVKNVRLRRDRIVVV---LNQKVY 117 (359)
Q Consensus 83 ~~~~~~~~~------------------------------------------~~~~~~v~~~~~~~~~~~~~---~d~~i~ 117 (359)
..-+.++. +.|..+...++.+|+...++ .|+.++
T Consensus 315 -~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~ 393 (626)
T KOG2106|consen 315 -DNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVR 393 (626)
T ss_pred -ccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEE
Confidence 21111111 11445677778888766555 899999
Q ss_pred EEEcccceeeeeEeccCCCceeeeeecCCCccEEEecCCCCeeEEEEecCCeeeEEeecccccccEEEEccCCcEEEEEe
Q 018248 118 VYNFTDLKLVDQIETVVNPTGLCDVSQNAGPMVMACPGLLKGQVRVEDYGTKKSKYITAHASRIASIAMTLDGRFVATAS 197 (359)
Q Consensus 118 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~v~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~ 197 (359)
+|+ ..+++.... -..+..++.|+|.+ . +|. |...|...+.+.+.+.+..+.....++++++|+|+|.+||.|+
T Consensus 394 lW~--~~k~~wt~~-~~d~~~~~~fhpsg-~--va~-Gt~~G~w~V~d~e~~~lv~~~~d~~~ls~v~ysp~G~~lAvgs 466 (626)
T KOG2106|consen 394 LWN--DHKLEWTKI-IEDPAECADFHPSG-V--VAV-GTATGRWFVLDTETQDLVTIHTDNEQLSVVRYSPDGAFLAVGS 466 (626)
T ss_pred Ecc--CCceeEEEE-ecCceeEeeccCcc-e--EEE-eeccceEEEEecccceeEEEEecCCceEEEEEcCCCCEEEEec
Confidence 999 555555443 34567788999988 3 555 7778888885555555555555588999999999999999999
Q ss_pred CCCCeEEEEEcCCC-cEEEEeecCCCCcceEEEEecCCCCEEEEEcCCCcEEEEEccCCCCCCCC------CccccCCC-
Q 018248 198 SKGTLIRVFNTMDG-SLLQEMRRGAERAEIYSLAFSSNAQWLAASSDKGTVHVFGLKVDSGSPGT------SKLHSASE- 269 (359)
Q Consensus 198 ~dg~~i~iwd~~~~-~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~------~~~~~~~~- 269 (359)
.|+. |+||.+... ........ .+.++|+.+.||+|+++|.+-+.|-.|..|.-..-...... .......|
T Consensus 467 ~d~~-iyiy~Vs~~g~~y~r~~k-~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~~~~~~~~ts~kDvkW~t~~c~lGF~ 544 (626)
T KOG2106|consen 467 HDNH-IYIYRVSANGRKYSRVGK-CSGSPITHLDWSSDSQFLVSNSGDYEILYWKPSECKQITSVKDVKWATYTCTLGFE 544 (626)
T ss_pred CCCe-EEEEEECCCCcEEEEeee-ecCceeEEeeecCCCceEEeccCceEEEEEccccCcccceecceeeeeeEEEEEEE
Confidence 9999 999998754 44444433 24589999999999999999999999999943332221111 00000000
Q ss_pred ---CCccCCCC-----------CceeeeeEeeeecceEEecccceeEEeecCCcEEEeeecccCCEEEEEecCCeEEEEE
Q 018248 270 ---PNLSSKNS-----------SAISSFRFIRGVLPKYFSSKWSMAQFRLPENVQYLVGFGRQNNTIVIVGLDGSYYKCE 335 (359)
Q Consensus 270 ---~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~~ 335 (359)
..++.... +.+.....++.+..-..+....+..+..+.+.+..++|.-+...+++.+.|..|..|+
T Consensus 545 v~g~s~~t~i~a~~rs~~~~~lA~gdd~g~v~lf~yPc~s~rA~~he~~ghs~~vt~V~Fl~~d~~li~tg~D~Si~qW~ 624 (626)
T KOG2106|consen 545 VFGGSDGTDINAVARSHCEKLLASGDDFGKVHLFSYPCSSPRAPSHEYGGHSSHVTNVAFLCKDSHLISTGKDTSIMQWR 624 (626)
T ss_pred EecccCCchHHHhhhhhhhhhhhccccCceEEEEccccCCCcccceeeccccceeEEEEEeeCCceEEecCCCceEEEEE
Confidence 01110000 0001111122111111222234455667778999999998888888888999999998
Q ss_pred e
Q 018248 336 F 336 (359)
Q Consensus 336 ~ 336 (359)
+
T Consensus 625 l 625 (626)
T KOG2106|consen 625 L 625 (626)
T ss_pred e
Confidence 6
No 119
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.93 E-value=1.7e-23 Score=161.29 Aligned_cols=286 Identities=10% Similarity=0.119 Sum_probs=196.6
Q ss_pred ceEEEEEccCCCEEEEec-CCceEEEEcCCCc------------ceeeeecccCCCCceeEEEEe-------ccCCEEEE
Q 018248 8 TIHHLALNQDHGCFATGT-ETGFRVYLSDPYK------------PIMRRDFDRNPRGGTQLVSML-------FRSNIICL 67 (359)
Q Consensus 8 ~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~------------~~~~~~~~~~h~~~v~~~~~~-------~~~~~~~~ 67 (359)
-...+.|+|||..|++-+ |+.+++|++.... +....... ....|...+|. |+.++.+.
T Consensus 51 f~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~--eg~tvydy~wYs~M~s~qP~t~l~a~ 128 (406)
T KOG2919|consen 51 FLKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQ--EGETVYDYCWYSRMKSDQPSTNLFAV 128 (406)
T ss_pred hhccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEec--cCCEEEEEEeeeccccCCCccceeee
Confidence 345789999999999999 9999999985210 01111111 13334444444 23344444
Q ss_pred EecCCCCCCeEEEEECCCccEEeeec---cCcc---eeEEEEecceeEEE--ecCeEEEEEc-ccceeeeeE-------e
Q 018248 68 VNSGPHQSNKVMIWDDHENRYLGELS---FRSE---VKNVRLRRDRIVVV--LNQKVYVYNF-TDLKLVDQI-------E 131 (359)
Q Consensus 68 ~~~~~~~d~~i~iwd~~~~~~~~~~~---~~~~---v~~~~~~~~~~~~~--~d~~i~i~d~-~~~~~~~~~-------~ 131 (359)
.+ .+.-|++||.-+|+....+. |..+ ..+++|+|||..+. ....|+++|+ +.|..-... .
T Consensus 129 ss----r~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGykrcirvFdt~RpGr~c~vy~t~~~~k~ 204 (406)
T KOG2919|consen 129 SS----RDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGYKRCIRVFDTSRPGRDCPVYTTVTKGKF 204 (406)
T ss_pred cc----ccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeecccceEEEeeccCCCCCCcchhhhhcccc
Confidence 44 68999999999999888876 4444 45899999998777 8889999999 555322221 1
Q ss_pred ccCCCceeeeeecCCCccEEEecCCCCeeEEEEec-CCeeeEEeecccccccEEEEccCCcEEEEEeCCCCeEEEEEcCC
Q 018248 132 TVVNPTGLCDVSQNAGPMVMACPGLLKGQVRVEDY-GTKKSKYITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMD 210 (359)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~l~~~g~~d~~v~~~~~-~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~ 210 (359)
+..+.+.+++++|.... .+++ |+....+-|+.. ...++..+.+|.+.|+.++|.++|+.|.+|+.....|..||++.
T Consensus 205 gq~giisc~a~sP~~~~-~~a~-gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~ 282 (406)
T KOG2919|consen 205 GQKGIISCFAFSPMDSK-TLAV-GSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRY 282 (406)
T ss_pred cccceeeeeeccCCCCc-ceee-ecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehh
Confidence 22455677888887654 3565 777888888444 44778888899999999999999999999986433399999986
Q ss_pred -CcEEEEeecCCC-CcceEEEEecCCCCEEEEEcCCCcEEEEEccCCCCCCCCCccccCCCCCccCCCCCceeeeeEeee
Q 018248 211 -GSLLQEMRRGAE-RAEIYSLAFSSNAQWLAASSDKGTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSAISSFRFIRG 288 (359)
Q Consensus 211 -~~~~~~~~~~~~-~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (359)
..++..+.++.. ...-.-+...|++++|++|+.||.|++||++......
T Consensus 283 ~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~----------------------------- 333 (406)
T KOG2919|consen 283 SRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEV----------------------------- 333 (406)
T ss_pred ccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCcc-----------------------------
Confidence 456666665322 2222344556899999999999999999999854221
Q ss_pred ecceEEecccceeEEeecCCcEEEeeecccCCEEEEEecCCeEEEEEeCCCCCCceE
Q 018248 289 VLPKYFSSKWSMAQFRLPENVQYLVGFGRQNNTIVIVGLDGSYYKCEFDPMKGGEMH 345 (359)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~ 345 (359)
..+..+...++.++++|--+.+++++.. ++|..+.+.+|+..
T Consensus 334 ------------sv~~~~sd~vNgvslnP~mpilatssGq---r~f~~~~dD~ge~~ 375 (406)
T KOG2919|consen 334 ------------SVTGNYSDTVNGVSLNPIMPILATSSGQ---RIFKYPKDDNGELE 375 (406)
T ss_pred ------------cccccccccccceecCcccceeeeccCc---eeecCCCccccccc
Confidence 0022234677899999987777766554 45666665555543
No 120
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=2.7e-23 Score=159.15 Aligned_cols=245 Identities=17% Similarity=0.278 Sum_probs=175.1
Q ss_pred CCCCCCceEEEEEccCCCEEEEec-CCceEEEEcCCCcce--eeeecccCCCCceeEEEEeccC--CEEEEEecCCCCCC
Q 018248 2 NQPDPITIHHLALNQDHGCFATGT-ETGFRVYLSDPYKPI--MRRDFDRNPRGGTQLVSMLFRS--NIICLVNSGPHQSN 76 (359)
Q Consensus 2 ~~~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~--~~~~~~~~h~~~v~~~~~~~~~--~~~~~~~~~~~~d~ 76 (359)
+..|.+-|+++.|.+-|+++|+|+ |++++|||.+..... .....+ .|.+.+..+.|.+.. ..++.++ .|+
T Consensus 9 ~s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wr-ah~~Si~rV~WAhPEfGqvvA~cS----~Dr 83 (361)
T KOG2445|consen 9 DSGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWR-AHDGSIWRVVWAHPEFGQVVATCS----YDR 83 (361)
T ss_pred ccCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEE-ecCCcEEEEEecCccccceEEEEe----cCC
Confidence 456888999999999999999999 999999997644433 333444 789999999998755 4455555 799
Q ss_pred eEEEEECCCc-------c--EEeeec-cCcceeEEEEecc--eeEEE---ecCeEEEEEcccce------eeeeEe----
Q 018248 77 KVMIWDDHEN-------R--YLGELS-FRSEVKNVRLRRD--RIVVV---LNQKVYVYNFTDLK------LVDQIE---- 131 (359)
Q Consensus 77 ~i~iwd~~~~-------~--~~~~~~-~~~~v~~~~~~~~--~~~~~---~d~~i~i~d~~~~~------~~~~~~---- 131 (359)
++.||.-... + ...++. ....|+++.|.|. |..++ .||.++||+..+.- +...++
T Consensus 84 tv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~ 163 (361)
T KOG2445|consen 84 TVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVID 163 (361)
T ss_pred ceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccC
Confidence 9999984211 1 122333 6688999999996 45555 99999999974432 222222
Q ss_pred ---ccCCCceeeeeecCCC-ccEEEecCCCC-----eeEEEEecC--C---eeeEEeecccccccEEEEccCC----cEE
Q 018248 132 ---TVVNPTGLCDVSQNAG-PMVMACPGLLK-----GQVRVEDYG--T---KKSKYITAHASRIASIAMTLDG----RFV 193 (359)
Q Consensus 132 ---~~~~~~~~~~~~~~~~-~~~l~~~g~~d-----~~v~~~~~~--~---~~~~~~~~~~~~i~~~~~s~~~----~~l 193 (359)
.+..+..++.|++..- ..++|. |+.+ +.++||... + ..+..+.+|..+|+.++|.|+- .+|
T Consensus 164 pp~~~~~~~~CvsWn~sr~~~p~iAv-gs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~l 242 (361)
T KOG2445|consen 164 PPGKNKQPCFCVSWNPSRMHEPLIAV-GSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLL 242 (361)
T ss_pred CcccccCcceEEeeccccccCceEEE-EcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeE
Confidence 2334456677776432 234554 5433 367775544 3 2345567999999999999963 479
Q ss_pred EEEeCCCCeEEEEEcCCC--------------------cEEEEeecCCCCcceEEEEecCCCCEEEEEcCCCcEEEEEcc
Q 018248 194 ATASSKGTLIRVFNTMDG--------------------SLLQEMRRGAERAEIYSLAFSSNAQWLAASSDKGTVHVFGLK 253 (359)
Q Consensus 194 ~~~~~dg~~i~iwd~~~~--------------------~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~ 253 (359)
|+++.|| |+||.++.. +.+.++.. |++.|..+.|+-.|..|++.+.||+||+|...
T Consensus 243 AvA~kDg--v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~--H~~~VWrv~wNmtGtiLsStGdDG~VRLWkan 318 (361)
T KOG2445|consen 243 AVATKDG--VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDD--HNGEVWRVRWNMTGTILSSTGDDGCVRLWKAN 318 (361)
T ss_pred EEeecCc--EEEEEEeeccchhhhhcccCCCCccccceEEeeeccC--CCCceEEEEEeeeeeEEeecCCCceeeehhhh
Confidence 9999998 899998631 12333433 88999999999999999999999999999876
Q ss_pred CCC
Q 018248 254 VDS 256 (359)
Q Consensus 254 ~~~ 256 (359)
-..
T Consensus 319 y~n 321 (361)
T KOG2445|consen 319 YNN 321 (361)
T ss_pred hhh
Confidence 543
No 121
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.93 E-value=8.4e-22 Score=160.59 Aligned_cols=276 Identities=11% Similarity=0.148 Sum_probs=201.7
Q ss_pred CCceEEEEEccCCCE-EEEecCCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEECC
Q 018248 6 PITIHHLALNQDHGC-FATGTETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDDH 84 (359)
Q Consensus 6 ~~~v~~~~~s~~g~~-l~~~~d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~~ 84 (359)
.+.|....|+|.+.. +++++.+.+.+|+.+.+....++.+-.+++. -..+++.+.++.-++.+. .+|.|.||+..
T Consensus 200 ne~v~~a~FHPtd~nliit~Gk~H~~Fw~~~~~~l~k~~~~fek~ek-k~Vl~v~F~engdviTgD---S~G~i~Iw~~~ 275 (626)
T KOG2106|consen 200 NEVVFLATFHPTDPNLIITCGKGHLYFWTLRGGSLVKRQGIFEKREK-KFVLCVTFLENGDVITGD---SGGNILIWSKG 275 (626)
T ss_pred cceEEEEEeccCCCcEEEEeCCceEEEEEccCCceEEEeeccccccc-eEEEEEEEcCCCCEEeec---CCceEEEEeCC
Confidence 456788999996655 4666699999999987765544433213333 333444444544444444 46999999987
Q ss_pred CccEEeeec-cCcceeEEEEecceeEEE--ecCeEEEEEcccceeeeeEeccCCCceeeeeecCCCccEEEecCCCCeeE
Q 018248 85 ENRYLGELS-FRSEVKNVRLRRDRIVVV--LNQKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAGPMVMACPGLLKGQV 161 (359)
Q Consensus 85 ~~~~~~~~~-~~~~v~~~~~~~~~~~~~--~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~v 161 (359)
+.+..+... |++.|.+++...+|.++. .|..|..|| ..-+.++..+.++..-..-.+.+....+++ |...+.|
T Consensus 276 ~~~~~k~~~aH~ggv~~L~~lr~GtllSGgKDRki~~Wd-~~y~k~r~~elPe~~G~iRtv~e~~~di~v---GTtrN~i 351 (626)
T KOG2106|consen 276 TNRISKQVHAHDGGVFSLCMLRDGTLLSGGKDRKIILWD-DNYRKLRETELPEQFGPIRTVAEGKGDILV---GTTRNFI 351 (626)
T ss_pred CceEEeEeeecCCceEEEEEecCccEeecCccceEEecc-ccccccccccCchhcCCeeEEecCCCcEEE---eeccceE
Confidence 777666665 999999999999999999 899999999 455555555443332222334454444333 4345555
Q ss_pred EEEecCCeeeEEeecccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcEEEEeecCCCCcceEEEEecCCCCEEEEE
Q 018248 162 RVEDYGTKKSKYITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSNAQWLAAS 241 (359)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~ 241 (359)
..=...........+|......++.+|+...+++++.|+. +++|+ ..+++.+.. -..+..++.|+|.| .+|.|
T Consensus 352 L~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~-v~lW~--~~k~~wt~~---~~d~~~~~~fhpsg-~va~G 424 (626)
T KOG2106|consen 352 LQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKH-VRLWN--DHKLEWTKI---IEDPAECADFHPSG-VVAVG 424 (626)
T ss_pred EEeeecCCceEEEEecccceeeEEcCCChhheeeccCcce-EEEcc--CCceeEEEE---ecCceeEeeccCcc-eEEEe
Confidence 5544555555667789999999999999999999999999 99999 455544443 23578999999999 99999
Q ss_pred cCCCcEEEEEccCCCCCCCCCccccCCCCCccCCCCCceeeeeEeeeecceEEecccceeEEeecCCcEEEeeecccCCE
Q 018248 242 SDKGTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSAISSFRFIRGVLPKYFSSKWSMAQFRLPENVQYLVGFGRQNNT 321 (359)
Q Consensus 242 ~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 321 (359)
+..|...+.|.++.... +++....++++++|+|+|.+
T Consensus 425 t~~G~w~V~d~e~~~lv-------------------------------------------~~~~d~~~ls~v~ysp~G~~ 461 (626)
T KOG2106|consen 425 TATGRWFVLDTETQDLV-------------------------------------------TIHTDNEQLSVVRYSPDGAF 461 (626)
T ss_pred eccceEEEEecccceeE-------------------------------------------EEEecCCceEEEEEcCCCCE
Confidence 99999999999985411 12223468899999999999
Q ss_pred EEEEecCCeEEEEEeCCC
Q 018248 322 IVIVGLDGSYYKCEFDPM 339 (359)
Q Consensus 322 l~~~~~dg~i~v~~~~~~ 339 (359)
||+|+.|+.|++|.++..
T Consensus 462 lAvgs~d~~iyiy~Vs~~ 479 (626)
T KOG2106|consen 462 LAVGSHDNHIYIYRVSAN 479 (626)
T ss_pred EEEecCCCeEEEEEECCC
Confidence 999999999999999864
No 122
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.93 E-value=1.7e-24 Score=176.14 Aligned_cols=235 Identities=11% Similarity=0.215 Sum_probs=198.2
Q ss_pred CCCceEEEEEccCCCEEEEec-CCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEEC
Q 018248 5 DPITIHHLALNQDHGCFATGT-ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDD 83 (359)
Q Consensus 5 h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~ 83 (359)
..+-|.++...|||+.|++|+ -.++.|||+..........+. .-.-....++++++.+..+.+. .||.|.|||+
T Consensus 464 rdnyiRSckL~pdgrtLivGGeastlsiWDLAapTprikaelt-ssapaCyALa~spDakvcFscc----sdGnI~vwDL 538 (705)
T KOG0639|consen 464 RDNYIRSCKLLPDGRTLIVGGEASTLSIWDLAAPTPRIKAELT-SSAPACYALAISPDAKVCFSCC----SDGNIAVWDL 538 (705)
T ss_pred cccceeeeEecCCCceEEeccccceeeeeeccCCCcchhhhcC-CcchhhhhhhcCCccceeeeec----cCCcEEEEEc
Confidence 467799999999999999999 889999999876665555553 1123445667777777665555 6899999999
Q ss_pred CCccEEeeec-cCcceeEEEEecceeEEE---ecCeEEEEEcccceeeeeEeccCCCceeeeeecCCCccEEEecCCCCe
Q 018248 84 HENRYLGELS-FRSEVKNVRLRRDRIVVV---LNQKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAGPMVMACPGLLKG 159 (359)
Q Consensus 84 ~~~~~~~~~~-~~~~v~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~ 159 (359)
.+...++.++ |.+.+.|+.++++|..+. .|++|+.||+++++.+.... ....|..+..+|.++. ++. |.+++
T Consensus 539 hnq~~VrqfqGhtDGascIdis~dGtklWTGGlDntvRcWDlregrqlqqhd-F~SQIfSLg~cP~~dW--lav-GMens 614 (705)
T KOG0639|consen 539 HNQTLVRQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQHD-FSSQIFSLGYCPTGDW--LAV-GMENS 614 (705)
T ss_pred ccceeeecccCCCCCceeEEecCCCceeecCCCccceeehhhhhhhhhhhhh-hhhhheecccCCCccc--eee-ecccC
Confidence 9999999999 999999999999998888 89999999999887766543 3455677788888876 666 88899
Q ss_pred eEEEEecCCeeeEEeecccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcEEEEeecCCCCcceEEEEecCCCCEEE
Q 018248 160 QVRVEDYGTKKSKYITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSNAQWLA 239 (359)
Q Consensus 160 ~v~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~ 239 (359)
.+.+-..++.....+..|..-|.++.|.+-|+++++.+.|.. +..|.+.-|..+.+.+ ..+.|.++.+|.|.++|+
T Consensus 615 ~vevlh~skp~kyqlhlheScVLSlKFa~cGkwfvStGkDnl-LnawrtPyGasiFqsk---E~SsVlsCDIS~ddkyIV 690 (705)
T KOG0639|consen 615 NVEVLHTSKPEKYQLHLHESCVLSLKFAYCGKWFVSTGKDNL-LNAWRTPYGASIFQSK---ESSSVLSCDISFDDKYIV 690 (705)
T ss_pred cEEEEecCCccceeecccccEEEEEEecccCceeeecCchhh-hhhccCccccceeecc---ccCcceeeeeccCceEEE
Confidence 999877777777788889999999999999999999999998 9999999999888877 457999999999999999
Q ss_pred EEcCCCcEEEEEc
Q 018248 240 ASSDKGTVHVFGL 252 (359)
Q Consensus 240 ~~~~dg~i~iw~~ 252 (359)
||+.|....||.+
T Consensus 691 TGSGdkkATVYeV 703 (705)
T KOG0639|consen 691 TGSGDKKATVYEV 703 (705)
T ss_pred ecCCCcceEEEEE
Confidence 9999988888875
No 123
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.93 E-value=8.3e-24 Score=175.50 Aligned_cols=291 Identities=14% Similarity=0.137 Sum_probs=213.4
Q ss_pred CCCCceEEEEEccCCCEEEEec-CCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEec-CCC--------
Q 018248 4 PDPITIHHLALNQDHGCFATGT-ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNS-GPH-------- 73 (359)
Q Consensus 4 ~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~-~~~-------- 73 (359)
.|++.|.|++..|.|.+|++|+ ||+++||.+.++..+....+ .+.|.+++|.|.++..+++.. +..
T Consensus 398 GHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~----d~~I~~vaw~P~~~~~vLAvA~~~~~~ivnp~~ 473 (733)
T KOG0650|consen 398 GHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQF----DSEIRSVAWNPLSDLCVLAVAVGECVLIVNPIF 473 (733)
T ss_pred ccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEee----cceeEEEEecCCCCceeEEEEecCceEEeCccc
Confidence 5899999999999999999999 99999999999998877777 678999999988764333221 100
Q ss_pred ---------------------CCCeEEEEECCCc-----cEEeeeccCcceeEEEEecceeEEE------ecCeEEEEEc
Q 018248 74 ---------------------QSNKVMIWDDHEN-----RYLGELSFRSEVKNVRLRRDRIVVV------LNQKVYVYNF 121 (359)
Q Consensus 74 ---------------------~d~~i~iwd~~~~-----~~~~~~~~~~~v~~~~~~~~~~~~~------~d~~i~i~d~ 121 (359)
.+..+..|.-... ..-..+.|...|..+.|+..|.+++ ....|.|+++
T Consensus 474 G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQL 553 (733)
T KOG0650|consen 474 GDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQL 553 (733)
T ss_pred cchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEEEEec
Confidence 2333445542211 1123345888999999999999998 4578999999
Q ss_pred ccceeeeeEeccCCCceeeeeecCCCccEEEecCCCCeeEEEEecCC-eeeEEeecccccccEEEEccCCcEEEEEeCCC
Q 018248 122 TDLKLVDQIETVVNPTGLCDVSQNAGPMVMACPGLLKGQVRVEDYGT-KKSKYITAHASRIASIAMTLDGRFVATASSKG 200 (359)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~v~~~~~~~-~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg 200 (359)
...+....|....+.+..+.|+|....+++|+ ...|++|+... ..++.+......|..++.+|.|.-|+.++.|+
T Consensus 554 SK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaT----q~~vRiYdL~kqelvKkL~tg~kwiS~msihp~GDnli~gs~d~ 629 (733)
T KOG0650|consen 554 SKRKSQSPFRKSKGLVQRVKFHPSKPYLFVAT----QRSVRIYDLSKQELVKKLLTGSKWISSMSIHPNGDNLILGSYDK 629 (733)
T ss_pred ccccccCchhhcCCceeEEEecCCCceEEEEe----ccceEEEehhHHHHHHHHhcCCeeeeeeeecCCCCeEEEecCCC
Confidence 76666566666667788899999988766665 56899977654 34455555667899999999999999999999
Q ss_pred CeEEEEEcCCC-cEEEEeecCCCCcceEEEEecCCCCEEEEEcCCCcEEEEEccCCCCCCCCCccccCCCCCccCCCCCc
Q 018248 201 TLIRVFNTMDG-SLLQEMRRGAERAEIYSLAFSSNAQWLAASSDKGTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSA 279 (359)
Q Consensus 201 ~~i~iwd~~~~-~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (359)
. +..||+.-. ++.+.+.. |...+++++|++.-.++++|+.||++.||.-.--.... .
T Consensus 630 k-~~WfDldlsskPyk~lr~--H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~-------------------q 687 (733)
T KOG0650|consen 630 K-MCWFDLDLSSKPYKTLRL--HEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLL-------------------Q 687 (733)
T ss_pred e-eEEEEcccCcchhHHhhh--hhhhhhhhhhccccceeeeecCCCcEEEEeeeeehhhh-------------------c
Confidence 9 999998755 45556655 78899999999999999999999999998654322100 0
Q ss_pred eeeeeEeeeecceEEecccceeEEeecCCcEEEeeecccCCEEEEEecCCeEEEE
Q 018248 280 ISSFRFIRGVLPKYFSSKWSMAQFRLPENVQYLVGFGRQNNTIVIVGLDGSYYKC 334 (359)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~ 334 (359)
...+..++. +..+ .......|..+.|+|....|+++++||+|++|
T Consensus 688 npliVPlK~-----L~gH-----~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 688 NPLIVPLKR-----LRGH-----EKTNDLGVLDTIWHPRQPWLFSAGADGTIRLF 732 (733)
T ss_pred CCceEeeee-----ccCc-----eeecccceEeecccCCCceEEecCCCceEEee
Confidence 000001111 1111 11112347788999999999999999999998
No 124
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.92 E-value=1.5e-24 Score=169.44 Aligned_cols=237 Identities=11% Similarity=0.212 Sum_probs=182.2
Q ss_pred CCCCCceEEEEEccCCCEEEEecCCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEE
Q 018248 3 QPDPITIHHLALNQDHGCFATGTETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWD 82 (359)
Q Consensus 3 ~~h~~~v~~~~~s~~g~~l~~~~d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd 82 (359)
+.|.+.|..|+++. +..|.+|.|++|+.|.++.. ...++. -...+..+......+..+.++ ..|.|||
T Consensus 106 ~AH~G~V~Gi~v~~-~~~~tvgdDKtvK~wk~~~~---p~~til--g~s~~~gIdh~~~~~~FaTcG------e~i~IWD 173 (433)
T KOG0268|consen 106 KAHEGLVRGICVTQ-TSFFTVGDDKTVKQWKIDGP---PLHTIL--GKSVYLGIDHHRKNSVFATCG------EQIDIWD 173 (433)
T ss_pred ecccCceeeEEecc-cceEEecCCcceeeeeccCC---cceeee--ccccccccccccccccccccC------ceeeecc
Confidence 46889999999998 55666666999999998752 223321 123333444433344444333 6899999
Q ss_pred CCCccEEeeec-cCcceeEEEEecceeEEE----ecCeEEEEEcccceeeeeEeccCCCceeeeeecCCCccEEEecCCC
Q 018248 83 DHENRYLGELS-FRSEVKNVRLRRDRIVVV----LNQKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAGPMVMACPGLL 157 (359)
Q Consensus 83 ~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~----~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~ 157 (359)
.....++..+. ....|.++.|+|....++ .|+.|.+||++++++++.+.... ..+.++|+|... .++ ++++
T Consensus 174 ~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~~m-RTN~IswnPeaf--nF~-~a~E 249 (433)
T KOG0268|consen 174 EQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVILTM-RTNTICWNPEAF--NFV-AANE 249 (433)
T ss_pred cccCCccceeecCCCceeEEecCCCcchheeeeccCCceEEEecccCCccceeeeec-cccceecCcccc--cee-eccc
Confidence 99999999998 678899999999876554 89999999999999888775433 346788999332 233 3779
Q ss_pred CeeEEEEecCC--eeeEEeecccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcEEEEeecCCCCcceEEEEecCCC
Q 018248 158 KGQVRVEDYGT--KKSKYITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSNA 235 (359)
Q Consensus 158 d~~v~~~~~~~--~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~ 235 (359)
|..++.++.+. .++....+|.+.|.++.|||.|+.+++||.|.+ |+||....+.....+... ....|.++.||.|.
T Consensus 250 D~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~EfvsgsyDks-IRIf~~~~~~SRdiYhtk-RMq~V~~Vk~S~Ds 327 (433)
T KOG0268|consen 250 DHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGSYDKS-IRIFPVNHGHSRDIYHTK-RMQHVFCVKYSMDS 327 (433)
T ss_pred cccceehhhhhhcccchhhcccceeEEEeccCCCcchhccccccce-EEEeecCCCcchhhhhHh-hhheeeEEEEeccc
Confidence 99999966654 677788899999999999999999999999999 999999877655444322 23579999999999
Q ss_pred CEEEEEcCCCcEEEEEccCCCC
Q 018248 236 QWLAASSDKGTVHVFGLKVDSG 257 (359)
Q Consensus 236 ~~l~~~~~dg~i~iw~~~~~~~ 257 (359)
+++++|++|+.|++|.-...+.
T Consensus 328 kyi~SGSdd~nvRlWka~Asek 349 (433)
T KOG0268|consen 328 KYIISGSDDGNVRLWKAKASEK 349 (433)
T ss_pred cEEEecCCCcceeeeecchhhh
Confidence 9999999999999999877654
No 125
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.92 E-value=2.2e-25 Score=188.56 Aligned_cols=212 Identities=17% Similarity=0.286 Sum_probs=181.5
Q ss_pred CCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEECCCccEEeeec-cCcceeEEEEe
Q 018248 26 ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDDHENRYLGELS-FRSEVKNVRLR 104 (359)
Q Consensus 26 d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~ 104 (359)
.-.+++|+... .. .|...+.++.+......++ .++ .|..+-+|.+..-..+..+. |..+|.++.|+
T Consensus 13 ~t~Lr~~~~~~------~~---~hsaav~~lk~~~s~r~~~--~Gg--~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~ 79 (825)
T KOG0267|consen 13 ATKLRVWDTRE------FV---AHSAAVGCLKIRKSSRSLV--TGG--EDEKVNLWAIGKPNAITSLTGHESPIESLTFD 79 (825)
T ss_pred eeccccccchh------hh---hhhhhhceeeeeccceeec--cCC--CceeeccccccCCchhheeeccCCcceeeecC
Confidence 55677777652 11 4677777777633333333 333 67889999988777777777 99999999999
Q ss_pred cceeEEE---ecCeEEEEEcccceeeeeEeccCCCceeeeeecCCCccEEEecCCCCeeEEEEecC-CeeeEEeeccccc
Q 018248 105 RDRIVVV---LNQKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAGPMVMACPGLLKGQVRVEDYG-TKKSKYITAHASR 180 (359)
Q Consensus 105 ~~~~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~v~~~~~~-~~~~~~~~~~~~~ 180 (359)
+...+++ .+|+|++||++..+.++++.+|...+..+.|+|.+.+ .|. |+.|+.+.+|+.+ ..+...+.+|...
T Consensus 80 ~~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~--~a~-gStdtd~~iwD~Rk~Gc~~~~~s~~~v 156 (825)
T KOG0267|consen 80 TSERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEF--FAS-GSTDTDLKIWDIRKKGCSHTYKSHTRV 156 (825)
T ss_pred cchhhhcccccCCceeeeehhhhhhhhhhhccccCcceeeeccceEE--ecc-ccccccceehhhhccCceeeecCCcce
Confidence 9988887 8999999999999999999999999999999998875 454 8899999999887 6888899999999
Q ss_pred ccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcEEEEeecCCCCcceEEEEecCCCCEEEEEcCCCcEEEEEccCCC
Q 018248 181 IASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSNAQWLAASSDKGTVHVFGLKVDS 256 (359)
Q Consensus 181 i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~ 256 (359)
+..+.|+|+|++++.+++|.. ++|||...|+.+.+|+. |.+.+.++.|+|..-++++|+.|+++++||+++-+
T Consensus 157 v~~l~lsP~Gr~v~~g~ed~t-vki~d~~agk~~~ef~~--~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe 229 (825)
T KOG0267|consen 157 VDVLRLSPDGRWVASGGEDNT-VKIWDLTAGKLSKEFKS--HEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFE 229 (825)
T ss_pred eEEEeecCCCceeeccCCcce-eeeeccccccccccccc--ccccccccccCchhhhhccCCCCceeeeeccceeE
Confidence 999999999999999999999 99999999999999987 78899999999999999999999999999999754
No 126
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.92 E-value=1.2e-21 Score=163.67 Aligned_cols=236 Identities=17% Similarity=0.217 Sum_probs=171.3
Q ss_pred CceEEEEEccCCCEE-EEec-CCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEECC
Q 018248 7 ITIHHLALNQDHGCF-ATGT-ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDDH 84 (359)
Q Consensus 7 ~~v~~~~~s~~g~~l-~~~~-d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~~ 84 (359)
..+.+++|+|+|+.+ +++. ++.|++||..+++.. ..+. .+ ..+..+.++++++.+++.+. .++.+++||+.
T Consensus 31 ~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~--~~~~-~~-~~~~~~~~~~~g~~l~~~~~---~~~~l~~~d~~ 103 (300)
T TIGR03866 31 QRPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVI--GTLP-SG-PDPELFALHPNGKILYIANE---DDNLVTVIDIE 103 (300)
T ss_pred CCCCceEECCCCCEEEEEECCCCeEEEEECCCCcEE--Eecc-CC-CCccEEEECCCCCEEEEEcC---CCCeEEEEECC
Confidence 346789999999977 5566 899999999876554 2332 22 23456778888876655543 46899999999
Q ss_pred CccEEeeeccCcceeEEEEecceeEEE---ec-CeEEEEEcccceeeeeEeccCCCceeeeeecCCCccEEEecCCCCee
Q 018248 85 ENRYLGELSFRSEVKNVRLRRDRIVVV---LN-QKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAGPMVMACPGLLKGQ 160 (359)
Q Consensus 85 ~~~~~~~~~~~~~v~~~~~~~~~~~~~---~d-~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~ 160 (359)
+++.+..+.....+.+++|+|++.+++ .+ ..+.+||..+++....+... .....++|++++.. ++.++..++.
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~--l~~~~~~~~~ 180 (300)
T TIGR03866 104 TRKVLAEIPVGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVLVD-QRPRFAEFTADGKE--LWVSSEIGGT 180 (300)
T ss_pred CCeEEeEeeCCCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEEcC-CCccEEEECCCCCE--EEEEcCCCCE
Confidence 988888777556678999999998877 23 45778899887776655433 23456888888875 3333556889
Q ss_pred EEEEecCCe-eeEEeeccc-------ccccEEEEccCCcEEEEE-eCCCCeEEEEEcCCCcEEEEeecCCCCcceEEEEe
Q 018248 161 VRVEDYGTK-KSKYITAHA-------SRIASIAMTLDGRFVATA-SSKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAF 231 (359)
Q Consensus 161 v~~~~~~~~-~~~~~~~~~-------~~i~~~~~s~~~~~l~~~-~~dg~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~ 231 (359)
|++|+.... .+..+..+. .....++|+|++++++++ +.++. |.+||+++++.+..+.. ...+.+++|
T Consensus 181 v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~-i~v~d~~~~~~~~~~~~---~~~~~~~~~ 256 (300)
T TIGR03866 181 VSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANR-VAVVDAKTYEVLDYLLV---GQRVWQLAF 256 (300)
T ss_pred EEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCe-EEEEECCCCcEEEEEEe---CCCcceEEE
Confidence 999887653 334433221 123568899999986554 45667 99999999888766542 347899999
Q ss_pred cCCCCEEEEE-cCCCcEEEEEccCCC
Q 018248 232 SSNAQWLAAS-SDKGTVHVFGLKVDS 256 (359)
Q Consensus 232 s~~~~~l~~~-~~dg~i~iw~~~~~~ 256 (359)
+|+|++|+++ ..++.|++||+++++
T Consensus 257 ~~~g~~l~~~~~~~~~i~v~d~~~~~ 282 (300)
T TIGR03866 257 TPDEKYLLTTNGVSNDVSVIDVAALK 282 (300)
T ss_pred CCCCCEEEEEcCCCCeEEEEECCCCc
Confidence 9999999876 468999999999876
No 127
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.92 E-value=9.9e-23 Score=171.81 Aligned_cols=290 Identities=14% Similarity=0.161 Sum_probs=205.5
Q ss_pred CCCCCceEEEEEccCCCEEEEec-CCceEEEEcCCCcceeeeecccCC----CCceeEEEEeccCCEEEEEecCCCCCCe
Q 018248 3 QPDPITIHHLALNQDHGCFATGT-ETGFRVYLSDPYKPIMRRDFDRNP----RGGTQLVSMLFRSNIICLVNSGPHQSNK 77 (359)
Q Consensus 3 ~~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~h----~~~v~~~~~~~~~~~~~~~~~~~~~d~~ 77 (359)
..|.+.|+++.|+|.+..|++++ |+++.+|..+....+.....+.|. ..+-...-|+++.+.++.-+ .-|.
T Consensus 264 ~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g----~~Gg 339 (764)
T KOG1063|consen 264 MGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHG----RTGG 339 (764)
T ss_pred cCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEec----ccCc
Confidence 47999999999999998888888 999999998865555544443222 22344445555554444444 5699
Q ss_pred EEEEECCCc-cEEe--eec-cCcceeEEEEecceeEEE---ecCeEEEEEcccc-eeeeeE---eccCCCceeeeeecCC
Q 018248 78 VMIWDDHEN-RYLG--ELS-FRSEVKNVRLRRDRIVVV---LNQKVYVYNFTDL-KLVDQI---ETVVNPTGLCDVSQNA 146 (359)
Q Consensus 78 i~iwd~~~~-~~~~--~~~-~~~~v~~~~~~~~~~~~~---~d~~i~i~d~~~~-~~~~~~---~~~~~~~~~~~~~~~~ 146 (359)
.++|..+.. .... .+. |-+.|.+++|+|.|.+++ .|.+-+++-.-.. +.-+.+ +.|.....++++-+.
T Consensus 340 ~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~- 418 (764)
T KOG1063|consen 340 FHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNE- 418 (764)
T ss_pred EEEEeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehccC-
Confidence 999983332 2222 223 889999999999999888 7888888765311 111222 335555566665553
Q ss_pred CccEEEecCCCCeeEEEEecCC----------------------------------------------------------
Q 018248 147 GPMVMACPGLLKGQVRVEDYGT---------------------------------------------------------- 168 (359)
Q Consensus 147 ~~~~l~~~g~~d~~v~~~~~~~---------------------------------------------------------- 168 (359)
+. .+++ |.....+|++....
T Consensus 419 ~~-~FVS-gAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~ 496 (764)
T KOG1063|consen 419 DL-QFVS-GADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAA 496 (764)
T ss_pred Cc-eeee-cccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccC
Confidence 21 1333 44444444443220
Q ss_pred -------------------eeeEEeecccccccEEEEccCCcEEEEEeCCCC----eEEEEEcCCCcEEEEeecCCCCcc
Q 018248 169 -------------------KKSKYITAHASRIASIAMTLDGRFVATASSKGT----LIRVFNTMDGSLLQEMRRGAERAE 225 (359)
Q Consensus 169 -------------------~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~----~i~iwd~~~~~~~~~~~~~~~~~~ 225 (359)
..++.+.+|...|.+++.+|+|+++|+++.... .|++|+..+...++.+.. |.-.
T Consensus 497 p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~--HsLT 574 (764)
T KOG1063|consen 497 PCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEG--HSLT 574 (764)
T ss_pred chhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecc--cceE
Confidence 012334578889999999999999999975432 299999999888888887 7789
Q ss_pred eEEEEecCCCCEEEEEcCCCcEEEEEccCCCCCCCCCccccCCCCCccCCCCCceeeeeEeeeecceEEecccceeEEee
Q 018248 226 IYSLAFSSNAQWLAASSDKGTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSAISSFRFIRGVLPKYFSSKWSMAQFRL 305 (359)
Q Consensus 226 i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (359)
|+.++|||||++|++.+.|.++.+|........ ...|+..+.
T Consensus 575 VT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~--------------------------------------e~~fa~~k~ 616 (764)
T KOG1063|consen 575 VTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKD--------------------------------------EFRFACLKA 616 (764)
T ss_pred EEEEEECCCCcEEEEeecCceEEeeeeecccch--------------------------------------hhhhccccc
Confidence 999999999999999999999999999654421 112444556
Q ss_pred cCCcEEEeeecccCCEEEEEecCCeEEEEEeCCC
Q 018248 306 PENVQYLVGFGRQNNTIVIVGLDGSYYKCEFDPM 339 (359)
Q Consensus 306 ~~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~~ 339 (359)
|...|..+.|+|++.++++++.|.+|.+|.....
T Consensus 617 HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~ 650 (764)
T KOG1063|consen 617 HTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDL 650 (764)
T ss_pred cceEEEEcccCcccceeEEecCCceEEEEeccCc
Confidence 7778999999999999999999999999998764
No 128
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=5.8e-22 Score=166.84 Aligned_cols=281 Identities=12% Similarity=0.159 Sum_probs=209.2
Q ss_pred CCCceEEEEEccCCCEEEEec-CCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEEC
Q 018248 5 DPITIHHLALNQDHGCFATGT-ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDD 83 (359)
Q Consensus 5 h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~ 83 (359)
.+.+|.+|||+.+.+.||++. +|.|.||++... ......+.-+....+..++|+. +..++.++ .+|.|.-||+
T Consensus 24 ~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~-w~~~~vi~g~~drsIE~L~W~e-~~RLFS~g----~sg~i~EwDl 97 (691)
T KOG2048|consen 24 KPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNN-WFLEPVIHGPEDRSIESLAWAE-GGRLFSSG----LSGSITEWDL 97 (691)
T ss_pred eccceEEEEEeccCCceeeeccCCcEEEEccCCC-ceeeEEEecCCCCceeeEEEcc-CCeEEeec----CCceEEEEec
Confidence 468899999999999999999 999999999863 3333444423356688888873 33444444 5799999999
Q ss_pred CCccEEeeec-cCcceeEEEEecceeEEE---ecCeEEEEEcccceeeeeEec--cCCCceeeeeecCCCccEEEecCCC
Q 018248 84 HENRYLGELS-FRSEVKNVRLRRDRIVVV---LNQKVYVYNFTDLKLVDQIET--VVNPTGLCDVSQNAGPMVMACPGLL 157 (359)
Q Consensus 84 ~~~~~~~~~~-~~~~v~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~g~~ 157 (359)
.+++.+..+. ..+.|++++.+|.+..++ .||.++.++...++....... ..+.+-++.|.+++.. ++. |+.
T Consensus 98 ~~lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~--i~~-Gs~ 174 (691)
T KOG2048|consen 98 HTLKQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTK--IAG-GSI 174 (691)
T ss_pred ccCceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccE--EEe-ccc
Confidence 9999999998 789999999999887777 788888888776665544332 3355555666666544 665 889
Q ss_pred CeeEEEEecCCee-eEEe----ec----ccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcEEEEeecCCCCcceEE
Q 018248 158 KGQVRVEDYGTKK-SKYI----TA----HASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRRGAERAEIYS 228 (359)
Q Consensus 158 d~~v~~~~~~~~~-~~~~----~~----~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~i~~ 228 (359)
||.|++|+..... +... .. ...-|+++.|-.++ .|++|...|. |.+||...+.+++.+.. |.+.|.+
T Consensus 175 Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~-tI~sgDS~G~-V~FWd~~~gTLiqS~~~--h~adVl~ 250 (691)
T KOG2048|consen 175 DGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDS-TIASGDSAGT-VTFWDSIFGTLIQSHSC--HDADVLA 250 (691)
T ss_pred CceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecC-cEEEecCCce-EEEEcccCcchhhhhhh--hhcceeE
Confidence 9999999887533 3211 11 22346777776665 5889999999 99999999999999887 7889999
Q ss_pred EEecCCCCEEEEEcCCCcEEEEEccCCCCCCCCCccccCCCCCccCCCCCceeeeeEeeeecceEEecccceeEEeecCC
Q 018248 229 LAFSSNAQWLAASSDKGTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSAISSFRFIRGVLPKYFSSKWSMAQFRLPEN 308 (359)
Q Consensus 229 ~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (359)
++..+++.++++++.|+.|.-|...+.... |. ......+|..
T Consensus 251 Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~------------------------------wv--------~~~~r~~h~h 292 (691)
T KOG2048|consen 251 LAVADNEDRVFSAGVDPKIIQYSLTTNKSE------------------------------WV--------INSRRDLHAH 292 (691)
T ss_pred EEEcCCCCeEEEccCCCceEEEEecCCccc------------------------------ee--------eeccccCCcc
Confidence 999999999999999999998888776521 00 0011334556
Q ss_pred cEEEeeecccCCEEEEEecCCeEEEEEeCC
Q 018248 309 VQYLVGFGRQNNTIVIVGLDGSYYKCEFDP 338 (359)
Q Consensus 309 ~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~ 338 (359)
.+.+++..++ .|++|+.|+.+.+-....
T Consensus 293 dvrs~av~~~--~l~sgG~d~~l~i~~s~~ 320 (691)
T KOG2048|consen 293 DVRSMAVIEN--ALISGGRDFTLAICSSRE 320 (691)
T ss_pred cceeeeeecc--eEEecceeeEEEEccccc
Confidence 6777777776 888888888887765543
No 129
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=1.7e-23 Score=175.23 Aligned_cols=306 Identities=9% Similarity=0.152 Sum_probs=223.9
Q ss_pred CCCCCceEEEEEccCCCEEEEec-CCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEE
Q 018248 3 QPDPITIHHLALNQDHGCFATGT-ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIW 81 (359)
Q Consensus 3 ~~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iw 81 (359)
+.|.+.|+.++...+|+.|++++ |-+|++|+.......+...+. .|...|.+++.....+.++ +++| -|+.|.+|
T Consensus 70 e~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~stir-~H~DYVkcla~~ak~~~lv-aSgG--LD~~IflW 145 (735)
T KOG0308|consen 70 EHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTFCMSTIR-THKDYVKCLAYIAKNNELV-ASGG--LDRKIFLW 145 (735)
T ss_pred hhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcchhHhhhh-cccchheeeeecccCceeE-EecC--CCccEEEE
Confidence 46889999999999999999999 999999999865434445555 7999999998843333333 3333 68999999
Q ss_pred ECCCc--cEEeee----------ccCcceeEEEEecceeEEE---ecCeEEEEEcccceeeeeEeccCCCceeeeeecCC
Q 018248 82 DDHEN--RYLGEL----------SFRSEVKNVRLRRDRIVVV---LNQKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNA 146 (359)
Q Consensus 82 d~~~~--~~~~~~----------~~~~~v~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (359)
|+.++ +.+..+ .+...|.+++.++.+..++ ..+.+++||.++.+.+..+.+|...|.++.++.++
T Consensus 146 Din~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDG 225 (735)
T KOG0308|consen 146 DINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDG 225 (735)
T ss_pred EccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEecCcccceEEeccccccceeeeeccccceEEEEEcCCC
Confidence 99977 233322 2557899999999998888 77899999999999999999999999999999999
Q ss_pred CccEEEecCCCCeeEEEEecCC-eeeEEeecccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCc-EEEEeecCCCCc
Q 018248 147 GPMVMACPGLLKGQVRVEDYGT-KKSKYITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGS-LLQEMRRGAERA 224 (359)
Q Consensus 147 ~~~~l~~~g~~d~~v~~~~~~~-~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~-~~~~~~~~~~~~ 224 (359)
.. +++ ++.||+|++|+... +++.++..|+..|+++..+|+-..+++|+.||. |..=|+++.. ....++ ...
T Consensus 226 t~--~ls-~sSDgtIrlWdLgqQrCl~T~~vH~e~VWaL~~~~sf~~vYsG~rd~~-i~~Tdl~n~~~~tlick---~da 298 (735)
T KOG0308|consen 226 TR--LLS-ASSDGTIRLWDLGQQRCLATYIVHKEGVWALQSSPSFTHVYSGGRDGN-IYRTDLRNPAKSTLICK---EDA 298 (735)
T ss_pred Ce--Eee-cCCCceEEeeeccccceeeeEEeccCceEEEeeCCCcceEEecCCCCc-EEecccCCchhheEeec---CCC
Confidence 87 555 66799999999875 678889999999999999999999999999999 9999999843 444444 345
Q ss_pred ceEEEEecCCCCEEEEEcCCCcEEEEEccCCCCCCCCCccccCCCCCccCCCCCceeeeeEeeeecceEEecccceeEEe
Q 018248 225 EIYSLAFSSNAQWLAASSDKGTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSAISSFRFIRGVLPKYFSSKWSMAQFR 304 (359)
Q Consensus 225 ~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (359)
+|..+..+...+-+-+++.|+.|+-|..+-.-.......... +.. ...+......+ -|. .-
T Consensus 299 Pv~~l~~~~~~~~~WvtTtds~I~rW~~~~~~~l~~s~~~~~--~~T---~~~~~~~~~~~----tp~----------~v 359 (735)
T KOG0308|consen 299 PVLKLHLHEHDNSVWVTTTDSSIKRWKLEPDIALSVSGDLDF--FST---DSNNHSCDLTN----TPD----------SV 359 (735)
T ss_pred chhhhhhccccCCceeeeccccceecCCccccccccCCCCCc--ccc---cCCCccccccC----CCc----------ee
Confidence 788888875555556778899999998876543211100000 000 00000000000 000 11
Q ss_pred ecC-CcEEEeeecccCCEEEEEecCCeEEEEEeCC
Q 018248 305 LPE-NVQYLVGFGRQNNTIVIVGLDGSYYKCEFDP 338 (359)
Q Consensus 305 ~~~-~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~ 338 (359)
.|. ..+...++-.|.+.+++=...|.+.+|++-.
T Consensus 360 i~Gg~ai~k~~mL~dkRhVlTkDa~gnv~lwDIl~ 394 (735)
T KOG0308|consen 360 IPGGAAIKKHAMLNDKRHVLTKDAKGNVALWDILA 394 (735)
T ss_pred ccCchhhhhhhhhcCcceEeeecCCCCEEEEEeee
Confidence 122 2344566677889999999999999999854
No 130
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=2.9e-23 Score=167.15 Aligned_cols=238 Identities=17% Similarity=0.248 Sum_probs=192.3
Q ss_pred CCceEEEEEccCCC-EEEEec-CCceEEEEcCCCcceeeeecccCCC-CceeEEEEeccCCEEEEEecCCCCCCeEEEEE
Q 018248 6 PITIHHLALNQDHG-CFATGT-ETGFRVYLSDPYKPIMRRDFDRNPR-GGTQLVSMLFRSNIICLVNSGPHQSNKVMIWD 82 (359)
Q Consensus 6 ~~~v~~~~~s~~g~-~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~h~-~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd 82 (359)
+.+|.+.+|.|+|. .+++++ ...++.||+++.+......+. |+. ..+....++++++++++.+ ..|.|.+..
T Consensus 257 ~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~k~~~~~-g~e~~~~e~FeVShd~~fia~~G----~~G~I~lLh 331 (514)
T KOG2055|consen 257 KFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVTKLKPPY-GVEEKSMERFEVSHDSNFIAIAG----NNGHIHLLH 331 (514)
T ss_pred cCccceeeecCCCceEEEecccceEEEEeeccccccccccCCC-CcccchhheeEecCCCCeEEEcc----cCceEEeeh
Confidence 56899999999999 777777 888999999876654433333 343 3456678889999999988 789999999
Q ss_pred CCCccEEeeeccCcceeEEEEecceeEEE---ecCeEEEEEcccceeeeeEeccCCCce--eeeeecCCCccEEEecCCC
Q 018248 83 DHENRYLGELSFRSEVKNVRLRRDRIVVV---LNQKVYVYNFTDLKLVDQIETVVNPTG--LCDVSQNAGPMVMACPGLL 157 (359)
Q Consensus 83 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~g~~ 157 (359)
..+++.+..++.++.|.++.|+.+++.++ .+|.|.+||++...+++.+... +.+. .++.++++. ++|+ |+.
T Consensus 332 akT~eli~s~KieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~-G~v~gts~~~S~ng~--ylA~-GS~ 407 (514)
T KOG2055|consen 332 AKTKELITSFKIEGVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVDD-GSVHGTSLCISLNGS--YLAT-GSD 407 (514)
T ss_pred hhhhhhhheeeeccEEeeEEEecCCcEEEEEcCCceEEEEecCCcceEEEEeec-CccceeeeeecCCCc--eEEe-ccC
Confidence 99999999999999999999999997776 7999999999999888888643 3333 445556555 6887 999
Q ss_pred CeeEEEEecCC-------eeeEEeecccccccEEEEccCCcEEEEEeC--CCCeEEEEEcCCCcEEEEeecCC-CCcceE
Q 018248 158 KGQVRVEDYGT-------KKSKYITAHASRIASIAMTLDGRFVATASS--KGTLIRVFNTMDGSLLQEMRRGA-ERAEIY 227 (359)
Q Consensus 158 d~~v~~~~~~~-------~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~--dg~~i~iwd~~~~~~~~~~~~~~-~~~~i~ 227 (359)
.|.|.||+.+. +++..+..-...|++++|+||++.||.+|. +.. +++-.+.+......++... .-+.|+
T Consensus 408 ~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~kna-lrLVHvPS~TVFsNfP~~n~~vg~vt 486 (514)
T KOG2055|consen 408 SGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQILAIASRVKKNA-LRLVHVPSCTVFSNFPTSNTKVGHVT 486 (514)
T ss_pred cceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcchhhhhhhhhccccc-eEEEeccceeeeccCCCCCCcccceE
Confidence 99999988543 556666667788999999999999998874 456 8998888877666665421 235799
Q ss_pred EEEecCCCCEEEEEcCCCcEEEEEcc
Q 018248 228 SLAFSSNAQWLAASSDKGTVHVFGLK 253 (359)
Q Consensus 228 ~~~~s~~~~~l~~~~~dg~i~iw~~~ 253 (359)
|++|||.|.+||.|..+|.|.+|.+.
T Consensus 487 c~aFSP~sG~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 487 CMAFSPNSGYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred EEEecCCCceEEeecCCCceeeEeec
Confidence 99999999999999999999999875
No 131
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=1.2e-22 Score=176.44 Aligned_cols=243 Identities=16% Similarity=0.205 Sum_probs=191.4
Q ss_pred CCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEECCCc-cEEeeec-cCcceeEEEEecceeEEE-ecCeEEEEEcccc
Q 018248 48 NPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDDHEN-RYLGELS-FRSEVKNVRLRRDRIVVV-LNQKVYVYNFTDL 124 (359)
Q Consensus 48 ~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~-~~~~~~~-~~~~v~~~~~~~~~~~~~-~d~~i~i~d~~~~ 124 (359)
+|..+...+++.++++.+.+++ .|+.|++|+.... +.-..+. +...|.+++...+..... .+++|.+|.+..+
T Consensus 11 aht~G~t~i~~d~~gefi~tcg----sdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~s~~f~~~s~~~tv~~y~fps~ 86 (933)
T KOG1274|consen 11 AHTGGLTLICYDPDGEFICTCG----SDGDIRKWKTNSDEEEPETIDISGELVSSIACYSNHFLTGSEQNTVLRYKFPSG 86 (933)
T ss_pred hccCceEEEEEcCCCCEEEEec----CCCceEEeecCCcccCCchhhccCceeEEEeecccceEEeeccceEEEeeCCCC
Confidence 6888999999999999777777 7899999996655 4444444 677788887765533333 8999999999877
Q ss_pred eeeeeEeccCCCceeeeeecCCCccEEEecCCCCeeEEE-EecCCeeeEEeecccccccEEEEccCCcEEEEEeCCCCeE
Q 018248 125 KLVDQIETVVNPTGLCDVSQNAGPMVMACPGLLKGQVRV-EDYGTKKSKYITAHASRIASIAMTLDGRFVATASSKGTLI 203 (359)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~v~~-~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~~i 203 (359)
+.-..+....-++..++++-+++. +|. |+.|-.|++ ...+....+.+++|+++|.++.|+|++++||+.+.||. |
T Consensus 87 ~~~~iL~Rftlp~r~~~v~g~g~~--iaa-gsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~-v 162 (933)
T KOG1274|consen 87 EEDTILARFTLPIRDLAVSGSGKM--IAA-GSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGK-V 162 (933)
T ss_pred CccceeeeeeccceEEEEecCCcE--EEe-ecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecCce-E
Confidence 665555555567788999888875 665 778888998 66777888899999999999999999999999999999 9
Q ss_pred EEEEcCCCcEEEEeecCC------CCcceEEEEecCCCCEEEEEcCCCcEEEEEccCCCCCCCCCccccCCCCCccCCCC
Q 018248 204 RVFNTMDGSLLQEMRRGA------ERAEIYSLAFSSNAQWLAASSDKGTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNS 277 (359)
Q Consensus 204 ~iwd~~~~~~~~~~~~~~------~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (359)
++||+.++.+...+..-. ....+..++|+|+|..++..+.|+.|++|+....+..-
T Consensus 163 ~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f------------------ 224 (933)
T KOG1274|consen 163 QIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQF------------------ 224 (933)
T ss_pred EEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceehe------------------
Confidence 999999988776654311 13456789999998888888999999999999876321
Q ss_pred CceeeeeEeeeecceEEecccceeEEeecCCcEEEeeecccCCEEEEEecCCeEEEEEeCC
Q 018248 278 SAISSFRFIRGVLPKYFSSKWSMAQFRLPENVQYLVGFGRQNNTIVIVGLDGSYYKCEFDP 338 (359)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~ 338 (359)
. +. -......+..+.|+|.|++||+++.||.|.||+++.
T Consensus 225 ------~----Lr------------~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t 263 (933)
T KOG1274|consen 225 ------K----LR------------DKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDT 263 (933)
T ss_pred ------e----ec------------ccccccceEEEEEcCCCcEEeeeccCCcEEEEeccc
Confidence 0 00 011123378899999999999999999999999984
No 132
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.91 E-value=9.4e-23 Score=157.09 Aligned_cols=245 Identities=14% Similarity=0.211 Sum_probs=193.3
Q ss_pred eeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEECCCccEEeeec-cCcceeEEEEecceeEEE---ecCe
Q 018248 40 IMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDDHENRYLGELS-FRSEVKNVRLRRDRIVVV---LNQK 115 (359)
Q Consensus 40 ~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~---~d~~ 115 (359)
.+.+.+. ||..+|.-++.......+..++ .|.+.+||.+++++++..+. |.+.|+++.|++.+.+++ .|++
T Consensus 139 ~lvre~~-GHkDGiW~Vaa~~tqpi~gtAS----ADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~t 213 (481)
T KOG0300|consen 139 RLVRELE-GHKDGIWHVAADSTQPICGTAS----ADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDET 213 (481)
T ss_pred eehhhhc-ccccceeeehhhcCCcceeecc----cccceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcc
Confidence 3445565 9999999888766556555555 78999999999999999998 999999999999998888 8889
Q ss_pred EEEEEc------ccc----------------------------------eeeeeEeccCCCceeeeeecCCCccEEEecC
Q 018248 116 VYVYNF------TDL----------------------------------KLVDQIETVVNPTGLCDVSQNAGPMVMACPG 155 (359)
Q Consensus 116 i~i~d~------~~~----------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g 155 (359)
-.||.. ... .++..+.+|...+.++.|-..++. +++ +
T Consensus 214 aHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q--~vT-a 290 (481)
T KOG0300|consen 214 AHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQ--MVT-A 290 (481)
T ss_pred hHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcce--eee-e
Confidence 999862 110 134455666676777777767766 443 6
Q ss_pred CCCeeEEEEecC-CeeeEEeecccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCC-cEEEEeecCCCCcceEEEEecC
Q 018248 156 LLKGQVRVEDYG-TKKSKYITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDG-SLLQEMRRGAERAEIYSLAFSS 233 (359)
Q Consensus 156 ~~d~~v~~~~~~-~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~-~~~~~~~~~~~~~~i~~~~~s~ 233 (359)
+.|.+..+|+.. +..+..+.+|....+.++-+|..+++++++.|.+ .++||.+.. ..+..|.+ |...|+++.|..
T Consensus 291 SWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtT-FRLWDFReaI~sV~VFQG--HtdtVTS~vF~~ 367 (481)
T KOG0300|consen 291 SWDRTANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTT-FRLWDFREAIQSVAVFQG--HTDTVTSVVFNT 367 (481)
T ss_pred eccccceeeeeccCceeccccCcchhccccccCCcceEEEEeccCce-eEeccchhhcceeeeecc--cccceeEEEEec
Confidence 689999997765 5778889999999999999999999999999999 999999843 34566776 778999999986
Q ss_pred CCCEEEEEcCCCcEEEEEccCCCCCCCCCccccCCCCCccCCCCCceeeeeEeeeecceEEecccceeEEeecCCcEEEe
Q 018248 234 NAQWLAASSDKGTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSAISSFRFIRGVLPKYFSSKWSMAQFRLPENVQYLV 313 (359)
Q Consensus 234 ~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 313 (359)
+. .+++|++|.+|+|||+++.... +++++. ..+++.+
T Consensus 368 dd-~vVSgSDDrTvKvWdLrNMRsp-----------------------------------------lATIRt-dS~~NRv 404 (481)
T KOG0300|consen 368 DD-RVVSGSDDRTVKVWDLRNMRSP-----------------------------------------LATIRT-DSPANRV 404 (481)
T ss_pred CC-ceeecCCCceEEEeeeccccCc-----------------------------------------ceeeec-CCcccee
Confidence 54 6789999999999999986621 112222 2367888
Q ss_pred eecccCCEEEEEecCCeEEEEEeCC
Q 018248 314 GFGRQNNTIVIVGLDGSYYKCEFDP 338 (359)
Q Consensus 314 ~~s~~~~~l~~~~~dg~i~v~~~~~ 338 (359)
+.+..++.|+.--++..|++|++.-
T Consensus 405 avs~g~~iIAiPhDNRqvRlfDlnG 429 (481)
T KOG0300|consen 405 AVSKGHPIIAIPHDNRQVRLFDLNG 429 (481)
T ss_pred EeecCCceEEeccCCceEEEEecCC
Confidence 8888888999988999999999864
No 133
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=5.6e-22 Score=152.80 Aligned_cols=200 Identities=15% Similarity=0.215 Sum_probs=153.1
Q ss_pred CCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEECCCccEE--eeec---cCcceeEEEEecceeEEE----ecCeEEE
Q 018248 48 NPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDDHENRYL--GELS---FRSEVKNVRLRRDRIVVV----LNQKVYV 118 (359)
Q Consensus 48 ~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~--~~~~---~~~~v~~~~~~~~~~~~~----~d~~i~i 118 (359)
||.+.|+.++|+.+++.++.++ .|+.|++|+++..... +.++ .-+..+.+.|.||-.-++ ...++++
T Consensus 84 gH~~~vt~~~FsSdGK~lat~~----~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~v 159 (420)
T KOG2096|consen 84 GHKKEVTDVAFSSDGKKLATIS----GDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLCV 159 (420)
T ss_pred ccCCceeeeEEcCCCceeEEEe----CCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEEE
Confidence 9999999999999999999999 7899999998763211 1111 223667899999976555 7889999
Q ss_pred EEccc---ceeeeeE-e-----c-cCCCceeeeeecCCCccEEEecCCCCeeEEEEecCCeeeEEeecccccccEEEEcc
Q 018248 119 YNFTD---LKLVDQI-E-----T-VVNPTGLCDVSQNAGPMVMACPGLLKGQVRVEDYGTKKSKYITAHASRIASIAMTL 188 (359)
Q Consensus 119 ~d~~~---~~~~~~~-~-----~-~~~~~~~~~~~~~~~~~~l~~~g~~d~~v~~~~~~~~~~~~~~~~~~~i~~~~~s~ 188 (359)
|.+.. |.....+ . - ....+..+.+--.+...++++ ++.|..|.+|+..++.+..+......-+..+.||
T Consensus 160 yk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~ims-as~dt~i~lw~lkGq~L~~idtnq~~n~~aavSP 238 (420)
T KOG2096|consen 160 YKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMS-ASLDTKICLWDLKGQLLQSIDTNQSSNYDAAVSP 238 (420)
T ss_pred EEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEE-ecCCCcEEEEecCCceeeeeccccccccceeeCC
Confidence 98732 2211111 0 0 112334445555556666776 6789999999999999999998888889999999
Q ss_pred CCcEEEEEeCCCCeEEEEEcC---CC-----cEEEEeecCCCCcceEEEEecCCCCEEEEEcCCCcEEEEEccCC
Q 018248 189 DGRFVATASSKGTLIRVFNTM---DG-----SLLQEMRRGAERAEIYSLAFSSNAQWLAASSDKGTVHVFGLKVD 255 (359)
Q Consensus 189 ~~~~l~~~~~dg~~i~iwd~~---~~-----~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~ 255 (359)
+|+++++++.... |++|.+- .| ..+.++++ |.+.|..++||++.+.+++.+.||+++|||++-.
T Consensus 239 ~GRFia~~gFTpD-VkVwE~~f~kdG~fqev~rvf~LkG--H~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVr 310 (420)
T KOG2096|consen 239 DGRFIAVSGFTPD-VKVWEPIFTKDGTFQEVKRVFSLKG--HQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVR 310 (420)
T ss_pred CCcEEEEecCCCC-ceEEEEEeccCcchhhhhhhheecc--chhheeeeeeCCCcceeEEEecCCcEEEeeccce
Confidence 9999999998888 9999862 23 23445665 8899999999999999999999999999998753
No 134
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=1.4e-22 Score=163.37 Aligned_cols=231 Identities=12% Similarity=0.121 Sum_probs=184.3
Q ss_pred CEEEEec--CCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEECCCccEEeeec-cC
Q 018248 19 GCFATGT--ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDDHENRYLGELS-FR 95 (359)
Q Consensus 19 ~~l~~~~--d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~-~~ 95 (359)
.+++++. ...+.+|.+........... -.+++.++.-++.+.+++..+ ..+.|++|.+.+|..+..+. |-
T Consensus 51 ~yllsaq~~rp~l~vw~i~k~~~~~q~~v---~Pg~v~al~s~n~G~~l~ag~----i~g~lYlWelssG~LL~v~~aHY 123 (476)
T KOG0646|consen 51 EYLLSAQLKRPLLHVWEILKKDQVVQYIV---LPGPVHALASSNLGYFLLAGT----ISGNLYLWELSSGILLNVLSAHY 123 (476)
T ss_pred hheeeecccCccccccccCchhhhhhhcc---cccceeeeecCCCceEEEeec----ccCcEEEEEeccccHHHHHHhhc
Confidence 3566666 45688998875443331222 267888888888777766554 46999999999999999888 99
Q ss_pred cceeEEEEecceeEEE---ecCeEEEEEcc---------cceeeeeEeccCCCceeeeeecCCCccEEEecCCCCeeEEE
Q 018248 96 SEVKNVRLRRDRIVVV---LNQKVYVYNFT---------DLKLVDQIETVVNPTGLCDVSQNAGPMVMACPGLLKGQVRV 163 (359)
Q Consensus 96 ~~v~~~~~~~~~~~~~---~d~~i~i~d~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~v~~ 163 (359)
..|+++.|+.|+.+++ .||.|.+|.+. +-++++.+..|.-++..+.+.+.+....+++ .+.|.++++
T Consensus 124 Q~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~T-aS~D~t~k~ 202 (476)
T KOG0646|consen 124 QSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYT-ASEDRTIKL 202 (476)
T ss_pred cceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEE-ecCCceEEE
Confidence 9999999999999988 89999999873 2456778888888888888888766556666 668999999
Q ss_pred EecCCeeeEEeecccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCC----------------cEEEEeecCCCCcceE
Q 018248 164 EDYGTKKSKYITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDG----------------SLLQEMRRGAERAEIY 227 (359)
Q Consensus 164 ~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~----------------~~~~~~~~~~~~~~i~ 227 (359)
|+.....+..-......+.+++++|-++.+++|+.+|. |.+.++... ..+..+.++.....|+
T Consensus 203 wdlS~g~LLlti~fp~si~av~lDpae~~~yiGt~~G~-I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~IT 281 (476)
T KOG0646|consen 203 WDLSLGVLLLTITFPSSIKAVALDPAERVVYIGTEEGK-IFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAIT 281 (476)
T ss_pred EEeccceeeEEEecCCcceeEEEcccccEEEecCCcce-EEeeehhcCCcccccccccccccccceeeeeccccCCccee
Confidence 99988666555556788999999999999999999999 988876432 2345566644445999
Q ss_pred EEEecCCCCEEEEEcCCCcEEEEEccCCCCC
Q 018248 228 SLAFSSNAQWLAASSDKGTVHVFGLKVDSGS 258 (359)
Q Consensus 228 ~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~ 258 (359)
|++++-||..|++|+.||.|+|||+.+.+..
T Consensus 282 cLais~DgtlLlSGd~dg~VcvWdi~S~Q~i 312 (476)
T KOG0646|consen 282 CLAISTDGTLLLSGDEDGKVCVWDIYSKQCI 312 (476)
T ss_pred EEEEecCccEEEeeCCCCCEEEEecchHHHH
Confidence 9999999999999999999999999987754
No 135
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.91 E-value=2.1e-22 Score=169.87 Aligned_cols=232 Identities=15% Similarity=0.216 Sum_probs=188.6
Q ss_pred CCCceEE-EEEcc-CCCEEEEec-CCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEE
Q 018248 5 DPITIHH-LALNQ-DHGCFATGT-ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIW 81 (359)
Q Consensus 5 h~~~v~~-~~~s~-~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iw 81 (359)
|.+-|.+ ++|-+ ++-.+++|+ |..|.+|........ ..+. ||...|.+++...++. + ++++ .|.++++|
T Consensus 56 ~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~~~P~--~~Lk-gH~snVC~ls~~~~~~-~--iSgS--WD~TakvW 127 (745)
T KOG0301|consen 56 PKGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQAEPL--YTLK-GHKSNVCSLSIGEDGT-L--ISGS--WDSTAKVW 127 (745)
T ss_pred CcceeeccceeccccCcceEeecccceEEEEecCCCCch--hhhh-ccccceeeeecCCcCc-e--Eecc--cccceEEe
Confidence 4455555 77765 555688888 999999999876665 4455 8999998887654444 3 3333 79999999
Q ss_pred ECCCccEEeeec-cCcceeEEEEecceeEEE--ecCeEEEEEcccceeeeeEeccCCCceeeeeecCCCccEEEecCCCC
Q 018248 82 DDHENRYLGELS-FRSEVKNVRLRRDRIVVV--LNQKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAGPMVMACPGLLK 158 (359)
Q Consensus 82 d~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~--~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d 158 (359)
- .+++...+. |+..|+++..-|++.++. .|.+|++|. .++.++++.+|...|..+++-++.. +++ ++.|
T Consensus 128 ~--~~~l~~~l~gH~asVWAv~~l~e~~~vTgsaDKtIklWk--~~~~l~tf~gHtD~VRgL~vl~~~~---flS-csND 199 (745)
T KOG0301|consen 128 R--IGELVYSLQGHTASVWAVASLPENTYVTGSADKTIKLWK--GGTLLKTFSGHTDCVRGLAVLDDSH---FLS-CSND 199 (745)
T ss_pred c--chhhhcccCCcchheeeeeecCCCcEEeccCcceeeecc--CCchhhhhccchhheeeeEEecCCC---eEe-ecCC
Confidence 6 456666677 999999999999998777 999999998 5889999999999999999988765 444 5589
Q ss_pred eeEEEEecCCeeeEEeecccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcEEEEeecCCCCcceEEEEecCCCCEE
Q 018248 159 GQVRVEDYGTKKSKYITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSNAQWL 238 (359)
Q Consensus 159 ~~v~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l 238 (359)
|.|++|+.++..+..+.+|+.-+.+++..+++..++++++|++ ++||+.. ++.+.+.. ....|+++.+-++|..
T Consensus 200 g~Ir~w~~~ge~l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrt-lriW~~~--e~~q~I~l--PttsiWsa~~L~NgDI- 273 (745)
T KOG0301|consen 200 GSIRLWDLDGEVLLEMHGHTNFVYSISMALSDGLIVSTGEDRT-LRIWKKD--ECVQVITL--PTTSIWSAKVLLNGDI- 273 (745)
T ss_pred ceEEEEeccCceeeeeeccceEEEEEEecCCCCeEEEecCCce-EEEeecC--ceEEEEec--CccceEEEEEeeCCCE-
Confidence 9999999999999999999999999998888899999999999 9999865 77777763 2348999999888865
Q ss_pred EEEcCCCcEEEEEccCCCCC
Q 018248 239 AASSDKGTVHVFGLKVDSGS 258 (359)
Q Consensus 239 ~~~~~dg~i~iw~~~~~~~~ 258 (359)
++|+.||.||||-....+..
T Consensus 274 vvg~SDG~VrVfT~~k~R~A 293 (745)
T KOG0301|consen 274 VVGGSDGRVRVFTVDKDRKA 293 (745)
T ss_pred EEeccCceEEEEEecccccC
Confidence 56788999999998865543
No 136
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.91 E-value=2.1e-21 Score=148.87 Aligned_cols=271 Identities=12% Similarity=0.154 Sum_probs=192.1
Q ss_pred ecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEECCCc----cEEeeec-cCcceeEEEEec--ceeEEE---ec
Q 018248 44 DFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDDHEN----RYLGELS-FRSEVKNVRLRR--DRIVVV---LN 113 (359)
Q Consensus 44 ~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~----~~~~~~~-~~~~v~~~~~~~--~~~~~~---~d 113 (359)
.+..+|.+-+.++.|.+.+..++.++ .|++|+|||.... .+....+ |.+.|..+.|.+ -|+.++ .|
T Consensus 7 pi~s~h~DlihdVs~D~~GRRmAtCS----sDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~D 82 (361)
T KOG2445|consen 7 PIDSGHKDLIHDVSFDFYGRRMATCS----SDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYD 82 (361)
T ss_pred ccccCCcceeeeeeecccCceeeecc----CCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecC
Confidence 34458888899999999999999988 7999999996443 3444455 999999999965 377777 89
Q ss_pred CeEEEEEcc---------cceeeeeEeccCCCceeeeeecCCCccEEEecCCCCeeEEEEecCC-ee------eEEe---
Q 018248 114 QKVYVYNFT---------DLKLVDQIETVVNPTGLCDVSQNAGPMVMACPGLLKGQVRVEDYGT-KK------SKYI--- 174 (359)
Q Consensus 114 ~~i~i~d~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~v~~~~~~~-~~------~~~~--- 174 (359)
+++.||.-. .-....++......+..+.|+|...++.+|+ .+.||.++|+..-. .. ...+
T Consensus 83 rtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~-~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~ 161 (361)
T KOG2445|consen 83 RTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAA-ASADGILRIYEAPDPMNLSQWTLQHEIQNV 161 (361)
T ss_pred CceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEE-eccCcEEEEEecCCccccccchhhhhhhhc
Confidence 999999852 1123455666777889999999999888888 66799999966432 11 1111
Q ss_pred ----ecccccccEEEEccC---CcEEEEEeCC-----CCeEEEEEcCCCc----EEEEeecCCCCcceEEEEecCCC---
Q 018248 175 ----TAHASRIASIAMTLD---GRFVATASSK-----GTLIRVFNTMDGS----LLQEMRRGAERAEIYSLAFSSNA--- 235 (359)
Q Consensus 175 ----~~~~~~i~~~~~s~~---~~~l~~~~~d-----g~~i~iwd~~~~~----~~~~~~~~~~~~~i~~~~~s~~~--- 235 (359)
..+..+..|+.|+|. ..+||.|+.+ +. ++||....+. .+.++.. |..+|++++|.|+-
T Consensus 162 ~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~-~~Iye~~e~~rKw~kva~L~d--~~dpI~di~wAPn~Gr~ 238 (361)
T KOG2445|consen 162 IDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNK-VKIYEYNENGRKWLKVAELPD--HTDPIRDISWAPNIGRS 238 (361)
T ss_pred cCCcccccCcceEEeeccccccCceEEEEcccCCccccc-eEEEEecCCcceeeeehhcCC--CCCcceeeeeccccCCc
Confidence 135667889999974 4588888876 35 8888764432 3445554 78899999999963
Q ss_pred -CEEEEEcCCCcEEEEEccCCCCCCCCCccccCCCCCccCCCCCceeeeeEeeeecceEEecccceeEEeecCCcEEEee
Q 018248 236 -QWLAASSDKGTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSAISSFRFIRGVLPKYFSSKWSMAQFRLPENVQYLVG 314 (359)
Q Consensus 236 -~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 314 (359)
.+||+++.|| |+||+++.....-..+.... + .....+. ...+..+..|.+.|..+.
T Consensus 239 y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~----~------~~~~~l~------------v~~vs~~~~H~~~VWrv~ 295 (361)
T KOG2445|consen 239 YHLLAVATKDG-VRIFKVKVARSAIEEEEVLA----P------DLMTDLP------------VEKVSELDDHNGEVWRVR 295 (361)
T ss_pred eeeEEEeecCc-EEEEEEeeccchhhhhcccC----C------CCccccc------------eEEeeeccCCCCceEEEE
Confidence 4799999999 99999986442110000000 0 0000010 011223556778999999
Q ss_pred ecccCCEEEEEecCCeEEEEEeCCCCCCceE
Q 018248 315 FGRQNNTIVIVGLDGSYYKCEFDPMKGGEMH 345 (359)
Q Consensus 315 ~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~ 345 (359)
|.-.|..|++.|.||.|++|+....+.-.|.
T Consensus 296 wNmtGtiLsStGdDG~VRLWkany~n~~kC~ 326 (361)
T KOG2445|consen 296 WNMTGTILSSTGDDGCVRLWKANYNNLWKCT 326 (361)
T ss_pred EeeeeeEEeecCCCceeeehhhhhhhhheee
Confidence 9999999999999999999998776555553
No 137
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.91 E-value=6.2e-23 Score=157.46 Aligned_cols=240 Identities=9% Similarity=0.112 Sum_probs=187.9
Q ss_pred CCCCceEEEEEccCCCEEEEec-CCceEEEEcCCCcc-eeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEE
Q 018248 4 PDPITIHHLALNQDHGCFATGT-ETGFRVYLSDPYKP-IMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIW 81 (359)
Q Consensus 4 ~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iw 81 (359)
.|.++|+++.|+|....|++|+ |++|++||...... ...+.| ....+|.++++.|.++++++.. .-.++++|
T Consensus 170 DH~devn~l~FHPre~ILiS~srD~tvKlFDfsK~saKrA~K~~--qd~~~vrsiSfHPsGefllvgT----dHp~~rlY 243 (430)
T KOG0640|consen 170 DHVDEVNDLDFHPRETILISGSRDNTVKLFDFSKTSAKRAFKVF--QDTEPVRSISFHPSGEFLLVGT----DHPTLRLY 243 (430)
T ss_pred hccCcccceeecchhheEEeccCCCeEEEEecccHHHHHHHHHh--hccceeeeEeecCCCceEEEec----CCCceeEE
Confidence 3789999999999999999999 99999999874322 222233 2467899999999999988777 56899999
Q ss_pred ECCCccEEeeec----cCcceeEEEEecceeEEE---ecCeEEEEEcccceeeeeEec-cC-CCceeeeeecCCCccEEE
Q 018248 82 DDHENRYLGELS----FRSEVKNVRLRRDRIVVV---LNQKVYVYNFTDLKLVDQIET-VV-NPTGLCDVSQNAGPMVMA 152 (359)
Q Consensus 82 d~~~~~~~~~~~----~~~~v~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~l~ 152 (359)
|+++.++...-. |.+.|+++.+++.+.+.+ .||.|++||--+++++.++.. |. ..+....|..+++ ++.
T Consensus 244 dv~T~QcfvsanPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~k--yiL 321 (430)
T KOG0640|consen 244 DVNTYQCFVSANPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGK--YIL 321 (430)
T ss_pred eccceeEeeecCcccccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCe--EEe
Confidence 999998876653 889999999999998877 899999999988899888854 32 3345556666665 477
Q ss_pred ecCCCCeeEEEEecCC-eeeEEeecc-----cccccEEEEccCCcEEEEEeC-CCCeEEEEEcCCCcEEEEeecCCCCcc
Q 018248 153 CPGLLKGQVRVEDYGT-KKSKYITAH-----ASRIASIAMTLDGRFVATASS-KGTLIRVFNTMDGSLLQEMRRGAERAE 225 (359)
Q Consensus 153 ~~g~~d~~v~~~~~~~-~~~~~~~~~-----~~~i~~~~~s~~~~~l~~~~~-dg~~i~iwd~~~~~~~~~~~~~~~~~~ 225 (359)
++| .|..+++|.... +++..+.+- ..--+...|+....|++.-.+ .+. +.-||.++...+..+..+ |++.
T Consensus 322 sSG-~DS~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~s-lcsWdaRtadr~~l~slg-Hn~a 398 (430)
T KOG0640|consen 322 SSG-KDSTVKLWEISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNS-LCSWDARTADRVALLSLG-HNGA 398 (430)
T ss_pred ecC-CcceeeeeeecCCceEEEEecCCcccchhhhhhhhhcCccceEEccccccCc-eeeccccchhhhhhcccC-CCCC
Confidence 745 699999998764 666666543 112344567777777766554 345 999999999887776655 8899
Q ss_pred eEEEEecCCCCEEEEEcCCCcEEEEEccC
Q 018248 226 IYSLAFSSNAQWLAASSDKGTVHVFGLKV 254 (359)
Q Consensus 226 i~~~~~s~~~~~l~~~~~dg~i~iw~~~~ 254 (359)
+..+.-||.+.-+++++.|..+++|--+.
T Consensus 399 ~R~i~HSP~~p~FmTcsdD~raRFWyrr~ 427 (430)
T KOG0640|consen 399 VRWIVHSPVEPAFMTCSDDFRARFWYRRV 427 (430)
T ss_pred ceEEEeCCCCCceeeecccceeeeeeecc
Confidence 99999999999999999999999997653
No 138
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.91 E-value=6.5e-23 Score=161.14 Aligned_cols=206 Identities=15% Similarity=0.212 Sum_probs=158.5
Q ss_pred cCcceeEEEEecce--eEEE---ecCeEEEEEccc----------------ceeeeeEeccCCCceeeeeecCCCccEEE
Q 018248 94 FRSEVKNVRLRRDR--IVVV---LNQKVYVYNFTD----------------LKLVDQIETVVNPTGLCDVSQNAGPMVMA 152 (359)
Q Consensus 94 ~~~~v~~~~~~~~~--~~~~---~d~~i~i~d~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 152 (359)
|.+.++-+...+-+ .+.+ ..|.|+||++.. .+++.++.+|...-..++|+|...+. ++
T Consensus 150 h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~-Ll 228 (440)
T KOG0302|consen 150 HYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGR-LL 228 (440)
T ss_pred cccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccc-cc
Confidence 45555556555543 2333 789999999832 24567778888888889999965543 44
Q ss_pred ecCCCCeeEEEEecCCee----eEEeecccccccEEEEccCCc-EEEEEeCCCCeEEEEEcCCCcEEEEeecCCCCcceE
Q 018248 153 CPGLLKGQVRVEDYGTKK----SKYITAHASRIASIAMTLDGR-FVATASSKGTLIRVFNTMDGSLLQEMRRGAERAEIY 227 (359)
Q Consensus 153 ~~g~~d~~v~~~~~~~~~----~~~~~~~~~~i~~~~~s~~~~-~l~~~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~i~ 227 (359)
+ |.--+.|++|...... ...+.+|+..|..++|||..+ .+++|+-||+ |+|||++.+.....+....|.+.|+
T Consensus 229 s-GDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~Dgs-IrIWDiRs~~~~~~~~~kAh~sDVN 306 (440)
T KOG0302|consen 229 S-GDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGS-IRIWDIRSGPKKAAVSTKAHNSDVN 306 (440)
T ss_pred c-CccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCce-EEEEEecCCCccceeEeeccCCcee
Confidence 3 6556788888766522 334677999999999999654 8899999999 9999999985433333344889999
Q ss_pred EEEecCCCCEEEEEcCCCcEEEEEccCCCCCCCCCccccCCCCCccCCCCCceeeeeEeeeecceEEecccceeEEeecC
Q 018248 228 SLAFSSNAQWLAASSDKGTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSAISSFRFIRGVLPKYFSSKWSMAQFRLPE 307 (359)
Q Consensus 228 ~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (359)
-+.|+.+-.+||+|++||+++|||+++-+ .....+.++.|.
T Consensus 307 VISWnr~~~lLasG~DdGt~~iwDLR~~~---------------------------------------~~~pVA~fk~Hk 347 (440)
T KOG0302|consen 307 VISWNRREPLLASGGDDGTLSIWDLRQFK---------------------------------------SGQPVATFKYHK 347 (440)
T ss_pred eEEccCCcceeeecCCCceEEEEEhhhcc---------------------------------------CCCcceeEEecc
Confidence 99999988899999999999999999855 224566788899
Q ss_pred CcEEEeeeccc-CCEEEEEecCCeEEEEEeCCCCC
Q 018248 308 NVQYLVGFGRQ-NNTIVIVGLDGSYYKCEFDPMKG 341 (359)
Q Consensus 308 ~~v~~~~~s~~-~~~l~~~~~dg~i~v~~~~~~~~ 341 (359)
.+|+++.|+|. ...|+++++|..|.+|++..+..
T Consensus 348 ~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D 382 (440)
T KOG0302|consen 348 APITSIEWHPHEDSVIAASGEDNQITIWDLSVEAD 382 (440)
T ss_pred CCeeEEEeccccCceEEeccCCCcEEEEEeeccCC
Confidence 99999999994 57889999999999999977644
No 139
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.90 E-value=1.3e-21 Score=151.35 Aligned_cols=286 Identities=16% Similarity=0.205 Sum_probs=205.3
Q ss_pred CCCCCceEEEEEcc-----CCCEEEEecCCceEEEEcCCCc--ceeeeecccCCCCceeEEEEeccCC--EEEEEecCCC
Q 018248 3 QPDPITIHHLALNQ-----DHGCFATGTETGFRVYLSDPYK--PIMRRDFDRNPRGGTQLVSMLFRSN--IICLVNSGPH 73 (359)
Q Consensus 3 ~~h~~~v~~~~~s~-----~g~~l~~~~d~~i~iw~~~~~~--~~~~~~~~~~h~~~v~~~~~~~~~~--~~~~~~~~~~ 73 (359)
..|+.+|..++|++ +-..+|+++.+.+.+|+..... ..+.......|......++|+++.+ ..+++.+|
T Consensus 35 ed~~~~I~gv~fN~~~~~~e~~vfatvG~~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~G-- 112 (385)
T KOG1034|consen 35 EDHNKPIFGVAFNSFLGCDEPQVFATVGGNRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAAGG-- 112 (385)
T ss_pred ccCCCccceeeeehhcCCCCCceEEEeCCcEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEeec--
Confidence 45788999999995 3356777778889999987433 2222222223667777788887653 22333333
Q ss_pred CCCeEEEEECCCccEEeeec-cCcceeEEEEeccee-EEE---ecCeEEEEEcccceeeeeE---eccCCCceeeeeecC
Q 018248 74 QSNKVMIWDDHENRYLGELS-FRSEVKNVRLRRDRI-VVV---LNQKVYVYNFTDLKLVDQI---ETVVNPTGLCDVSQN 145 (359)
Q Consensus 74 ~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~-~~~---~d~~i~i~d~~~~~~~~~~---~~~~~~~~~~~~~~~ 145 (359)
.-|.|+|.|+.++++...+. |...|+.+.++|+.. +++ .|..|++|++++..++..+ .+|...+-.+.|+++
T Consensus 113 ~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~ 192 (385)
T KOG1034|consen 113 YLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLD 192 (385)
T ss_pred ceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEEcCC
Confidence 45999999999999999988 999999999999873 333 8999999999999998887 568888888999998
Q ss_pred CCccEEEecCCCCeeEEEEecCCeee-----------------------E------EeecccccccEEEEccCCcEEEEE
Q 018248 146 AGPMVMACPGLLKGQVRVEDYGTKKS-----------------------K------YITAHASRIASIAMTLDGRFVATA 196 (359)
Q Consensus 146 ~~~~~l~~~g~~d~~v~~~~~~~~~~-----------------------~------~~~~~~~~i~~~~~s~~~~~l~~~ 196 (359)
++. +++ ++.|..+++|..+.+.. . +-.-|...|.|+.|- |.++++-
T Consensus 193 gd~--i~S-cGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~--gd~ilSk 267 (385)
T KOG1034|consen 193 GDR--IAS-CGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF--GDFILSK 267 (385)
T ss_pred CCe--eec-cCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHH--hhheeec
Confidence 885 777 55799999999873110 0 112366667777663 5788888
Q ss_pred eCCCCeEEEEEc-CCCc-------------EEEEeecCCCCcceEEE--EecCCCCEEEEEcCCCcEEEEEccCCCCCCC
Q 018248 197 SSKGTLIRVFNT-MDGS-------------LLQEMRRGAERAEIYSL--AFSSNAQWLAASSDKGTVHVFGLKVDSGSPG 260 (359)
Q Consensus 197 ~~dg~~i~iwd~-~~~~-------------~~~~~~~~~~~~~i~~~--~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~ 260 (359)
+-++. |..|.. +-++ .+.++.. ....|+-+ +|.|-+++||.|...|.|.+||++..++..
T Consensus 268 scena-I~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~--~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~- 343 (385)
T KOG1034|consen 268 SCENA-IVCWKPGKLEESIHNVKPPESATTILGEFDY--PMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPK- 343 (385)
T ss_pred ccCce-EEEEecchhhhhhhccCCCccceeeeeEecc--CccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCcc-
Confidence 88888 999986 2222 2233333 23455555 455678899999999999999999877431
Q ss_pred CCccccCCCCCccCCCCCceeeeeEeeeecceEEecccceeEEeecCCcEEEeeecccCCEEEEEecCCeEEEEEe
Q 018248 261 TSKLHSASEPNLSSKNSSAISSFRFIRGVLPKYFSSKWSMAQFRLPENVQYLVGFGRQNNTIVIVGLDGSYYKCEF 336 (359)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~ 336 (359)
.+.... ......|...+|+.|+..|+..++||.|.-|+.
T Consensus 344 -----------------------------~ttl~~--------s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdr 382 (385)
T KOG1034|consen 344 -----------------------------CTTLTH--------SKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDR 382 (385)
T ss_pred -----------------------------CceEEe--------ccccceeeeeeecccCcEEEEEeCCCcEEEEEe
Confidence 000111 112356788999999999999999998888864
No 140
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=4.2e-21 Score=161.73 Aligned_cols=239 Identities=15% Similarity=0.219 Sum_probs=190.4
Q ss_pred CCceeEEEEeccCCEEEEEecCCCCCCeEEEEECCCccEEee-e--ccCcceeEEEEecceeEEE--ecCeEEEEEcccc
Q 018248 50 RGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDDHENRYLGE-L--SFRSEVKNVRLRRDRIVVV--LNQKVYVYNFTDL 124 (359)
Q Consensus 50 ~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~-~--~~~~~v~~~~~~~~~~~~~--~d~~i~i~d~~~~ 124 (359)
..+|.+++++...+.+++.- .+|.|.+|++..+-.... + .....|.+++|.+.++++. .+|.|.-||+.++
T Consensus 25 Ps~I~slA~s~kS~~lAvsR----t~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e~~RLFS~g~sg~i~EwDl~~l 100 (691)
T KOG2048|consen 25 PSEIVSLAYSHKSNQLAVSR----TDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAEGGRLFSSGLSGSITEWDLHTL 100 (691)
T ss_pred ccceEEEEEeccCCceeeec----cCCcEEEEccCCCceeeEEEecCCCCceeeEEEccCCeEEeecCCceEEEEecccC
Confidence 56788888888888877766 789999999988643332 2 2557899999998888877 8999999999999
Q ss_pred eeeeeEeccCCCceeeeeecCCCccEEEecCCCCeeEEEEecCCeeeE---EeecccccccEEEEccCCcEEEEEeCCCC
Q 018248 125 KLVDQIETVVNPTGLCDVSQNAGPMVMACPGLLKGQVRVEDYGTKKSK---YITAHASRIASIAMTLDGRFVATASSKGT 201 (359)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~v~~~~~~~~~~~---~~~~~~~~i~~~~~s~~~~~l~~~~~dg~ 201 (359)
++...+....+.++.++.+|.++. ++. |++||.++........+. .+...++.+.+++|+|++..|++|+.||.
T Consensus 101 k~~~~~d~~gg~IWsiai~p~~~~--l~I-gcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~ 177 (691)
T KOG2048|consen 101 KQKYNIDSNGGAIWSIAINPENTI--LAI-GCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGV 177 (691)
T ss_pred ceeEEecCCCcceeEEEeCCccce--EEe-ecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccCce
Confidence 999999999999999999998875 554 778996665555554433 23445689999999999999999999999
Q ss_pred eEEEEEcCCCcEEEEeec-----CC-CCcceEEEEecCCCCEEEEEcCCCcEEEEEccCCCCCCCCCccccCCCCCccCC
Q 018248 202 LIRVFNTMDGSLLQEMRR-----GA-ERAEIYSLAFSSNAQWLAASSDKGTVHVFGLKVDSGSPGTSKLHSASEPNLSSK 275 (359)
Q Consensus 202 ~i~iwd~~~~~~~~~~~~-----~~-~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (359)
|++||..++..++.... .. .+.-|+++.|-.++ .|++|...|+|.+||-..+....
T Consensus 178 -Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~-tI~sgDS~G~V~FWd~~~gTLiq---------------- 239 (691)
T KOG2048|consen 178 -IRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDS-TIASGDSAGTVTFWDSIFGTLIQ---------------- 239 (691)
T ss_pred -EEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecC-cEEEecCCceEEEEcccCcchhh----------------
Confidence 99999999987763221 11 23467888887554 78899999999999999887221
Q ss_pred CCCceeeeeEeeeecceEEecccceeEEeecCCcEEEeeecccCCEEEEEecCCeEEEEEeCCC
Q 018248 276 NSSAISSFRFIRGVLPKYFSSKWSMAQFRLPENVQYLVGFGRQNNTIVIVGLDGSYYKCEFDPM 339 (359)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~~ 339 (359)
.++.+...|.+++.++++++++++|.|+.+..|...+.
T Consensus 240 --------------------------S~~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~ 277 (691)
T KOG2048|consen 240 --------------------------SHSCHDADVLALAVADNEDRVFSAGVDPKIIQYSLTTN 277 (691)
T ss_pred --------------------------hhhhhhcceeEEEEcCCCCeEEEccCCCceEEEEecCC
Confidence 13445677899999999999999999999999988764
No 141
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.90 E-value=7.9e-22 Score=155.12 Aligned_cols=202 Identities=15% Similarity=0.215 Sum_probs=158.7
Q ss_pred CCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEECCC----------------ccEEeeec-cCcceeEEEEec--cee
Q 018248 48 NPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDDHE----------------NRYLGELS-FRSEVKNVRLRR--DRI 108 (359)
Q Consensus 48 ~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~~~----------------~~~~~~~~-~~~~v~~~~~~~--~~~ 108 (359)
+|.+.+.-+...+-++..+.++.+ ..|.|.||++.. .+++.++. |...=..++|+| .|.
T Consensus 149 ~h~g~~NRvr~~~~~~~~~~asws--e~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~ 226 (440)
T KOG0302|consen 149 PHYGGINRVRVSRLGNEVLCASWS--ENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGR 226 (440)
T ss_pred ccccccceeeecccCCcceeeeec--ccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccc
Confidence 567777777777666666666665 579999999642 24556666 778888999999 344
Q ss_pred EEE--ecCeEEEEEccccee---eeeEeccCCCceeeeeecCCCccEEEecCCCCeeEEEEecCCe---eeEEeeccccc
Q 018248 109 VVV--LNQKVYVYNFTDLKL---VDQIETVVNPTGLCDVSQNAGPMVMACPGLLKGQVRVEDYGTK---KSKYITAHASR 180 (359)
Q Consensus 109 ~~~--~d~~i~i~d~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~v~~~~~~~~---~~~~~~~~~~~ 180 (359)
++. .-+.|++|...++.- ...+.+|...|.-++|+|..+.+ ++ +++-||.|+||+.+.. .....++|.+.
T Consensus 227 LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~v-fa-ScS~DgsIrIWDiRs~~~~~~~~~kAh~sD 304 (440)
T KOG0302|consen 227 LLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGV-FA-SCSCDGSIRIWDIRSGPKKAAVSTKAHNSD 304 (440)
T ss_pred cccCccccceEeeeeccCceeecCccccccccchhhhccCCccCce-EE-eeecCceEEEEEecCCCccceeEeeccCCc
Confidence 444 557899999877642 22345688888999999998873 33 3678999999998875 34445899999
Q ss_pred ccEEEEccCCcEEEEEeCCCCeEEEEEcCC---CcEEEEeecCCCCcceEEEEecCC-CCEEEEEcCCCcEEEEEccCCC
Q 018248 181 IASIAMTLDGRFVATASSKGTLIRVFNTMD---GSLLQEMRRGAERAEIYSLAFSSN-AQWLAASSDKGTVHVFGLKVDS 256 (359)
Q Consensus 181 i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~---~~~~~~~~~~~~~~~i~~~~~s~~-~~~l~~~~~dg~i~iw~~~~~~ 256 (359)
|+.|.|+..-.+||+|+.||. ++|||+++ ++++.+|+. |..+|+++.|+|. ...|++++.|.+|.|||+....
T Consensus 305 VNVISWnr~~~lLasG~DdGt-~~iwDLR~~~~~~pVA~fk~--Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~ 381 (440)
T KOG0302|consen 305 VNVISWNRREPLLASGGDDGT-LSIWDLRQFKSGQPVATFKY--HKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEA 381 (440)
T ss_pred eeeEEccCCcceeeecCCCce-EEEEEhhhccCCCcceeEEe--ccCCeeEEEeccccCceEEeccCCCcEEEEEeeccC
Confidence 999999998889999999999 99999986 567888887 8899999999985 4578888899999999998654
No 142
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.90 E-value=1.3e-23 Score=178.00 Aligned_cols=229 Identities=13% Similarity=0.203 Sum_probs=198.5
Q ss_pred CCCCceEEEEEccCCCEEEEec-CCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEE
Q 018248 4 PDPITIHHLALNQDHGCFATGT-ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWD 82 (359)
Q Consensus 4 ~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd 82 (359)
.|...|.|+..-..++.+++|+ |-.+.+|.+.....+. .+. +|..+|.++.+.+....++..+ .+|+|++||
T Consensus 26 ~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~--S~~-~hespIeSl~f~~~E~Llaags----asgtiK~wD 98 (825)
T KOG0267|consen 26 AHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAIT--SLT-GHESPIESLTFDTSERLLAAGS----ASGTIKVWD 98 (825)
T ss_pred hhhhhhceeeeeccceeeccCCCceeeccccccCCchhh--eee-ccCCcceeeecCcchhhhcccc----cCCceeeee
Confidence 3677788888877888999999 8888899987544443 344 8999999999988777766665 689999999
Q ss_pred CCCccEEeeec-cCcceeEEEEecceeEEE---ecCeEEEEEcccceeeeeEeccCCCceeeeeecCCCccEEEecCCCC
Q 018248 83 DHENRYLGELS-FRSEVKNVRLRRDRIVVV---LNQKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAGPMVMACPGLLK 158 (359)
Q Consensus 83 ~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d 158 (359)
++.++.++++. |...+.++.|+|-+.+.+ .|..+++||++...+.+.+.+|...+.++.|+|++.. ++. |.+|
T Consensus 99 leeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~--v~~-g~ed 175 (825)
T KOG0267|consen 99 LEEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGRW--VAS-GGED 175 (825)
T ss_pred hhhhhhhhhhhccccCcceeeeccceEEeccccccccceehhhhccCceeeecCCcceeEEEeecCCCce--eec-cCCc
Confidence 99999999998 999999999999999997 8999999999988899999999999999999999875 666 6679
Q ss_pred eeEEEEecC-CeeeEEeecccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcEEEEeecCCCCcceEEEEecCCCCE
Q 018248 159 GQVRVEDYG-TKKSKYITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSNAQW 237 (359)
Q Consensus 159 ~~v~~~~~~-~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~ 237 (359)
..++||+.+ ++....|..|.+.+.++.|+|..-++++|+.|++ +++||+++.+.+..... ....|.+.+|+|++..
T Consensus 176 ~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~t-v~f~dletfe~I~s~~~--~~~~v~~~~fn~~~~~ 252 (825)
T KOG0267|consen 176 NTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRT-VRFWDLETFEVISSGKP--ETDGVRSLAFNPDGKI 252 (825)
T ss_pred ceeeeecccccccccccccccccccccccCchhhhhccCCCCce-eeeeccceeEEeeccCC--ccCCceeeeecCCcee
Confidence 999998875 4667788999999999999999999999999999 99999999998887775 4678999999999999
Q ss_pred EEEEcCCC
Q 018248 238 LAASSDKG 245 (359)
Q Consensus 238 l~~~~~dg 245 (359)
+++|....
T Consensus 253 ~~~G~q~s 260 (825)
T KOG0267|consen 253 VLSGEQIS 260 (825)
T ss_pred eecCchhh
Confidence 98876554
No 143
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.90 E-value=1.3e-21 Score=157.56 Aligned_cols=245 Identities=13% Similarity=0.063 Sum_probs=180.1
Q ss_pred CCCCceEEEEEccCCC--EEEEec-CCceEEEEcCCCcc--eeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeE
Q 018248 4 PDPITIHHLALNQDHG--CFATGT-ETGFRVYLSDPYKP--IMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKV 78 (359)
Q Consensus 4 ~h~~~v~~~~~s~~g~--~l~~~~-d~~i~iw~~~~~~~--~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i 78 (359)
.+..+|++++|+|... ++|+|. .|.|-+||+.+.+. .-...+. .|.++|..+.|+|.....++.+. .||+|
T Consensus 184 v~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~-~hs~~Vs~l~F~P~n~s~i~ssS---yDGti 259 (498)
T KOG4328|consen 184 VTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFT-PHSGPVSGLKFSPANTSQIYSSS---YDGTI 259 (498)
T ss_pred ecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEec-cCCccccceEecCCChhheeeec---cCcee
Confidence 4678999999999654 677888 89999999952221 1112232 78999999999987654444333 79999
Q ss_pred EEEECCCccEEeeec---cCcceeEEEEecceeEEE---ecCeEEEEEccccee-eeeEeccCCCceeeeeecCCCccEE
Q 018248 79 MIWDDHENRYLGELS---FRSEVKNVRLRRDRIVVV---LNQKVYVYNFTDLKL-VDQIETVVNPTGLCDVSQNAGPMVM 151 (359)
Q Consensus 79 ~iwd~~~~~~~~~~~---~~~~v~~~~~~~~~~~~~---~d~~i~i~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l 151 (359)
+.-|++++.....+. ....+.++.|+.+...++ .=|...+||+++... ...+..|...|..++++|-... ++
T Consensus 260 R~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~-~l 338 (498)
T KOG4328|consen 260 RLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPW-FL 338 (498)
T ss_pred eeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCch-he
Confidence 999998874433333 334566777877655444 345889999977654 5666778888999999998876 34
Q ss_pred EecCCCCeeEEEEecCC---e--eeEEeecccccccEEEEccCCcEEEEEeCCCCeEEEEEcC----CCcEEEEeecCCC
Q 018248 152 ACPGLLKGQVRVEDYGT---K--KSKYITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTM----DGSLLQEMRRGAE 222 (359)
Q Consensus 152 ~~~g~~d~~v~~~~~~~---~--~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~----~~~~~~~~~~~~~ 222 (359)
|+ ++.|++.+||+.+. + ++.....|...|.+..|||.+-.|+|.+.|.. |+|||.. ...++.++. |.+
T Consensus 339 aT-~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~-IRv~dss~~sa~~~p~~~I~-Hn~ 415 (498)
T KOG4328|consen 339 AT-ASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNE-IRVFDSSCISAKDEPLGTIP-HNN 415 (498)
T ss_pred ee-cccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCc-eEEeecccccccCCccceee-ccC
Confidence 54 67899999999864 2 23455679999999999998888999999999 9999973 334444444 111
Q ss_pred C--c--ceEEEEecCCCCEEEEEcCCCcEEEEEccCCC
Q 018248 223 R--A--EIYSLAFSSNAQWLAASSDKGTVHVFGLKVDS 256 (359)
Q Consensus 223 ~--~--~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~ 256 (359)
. . ......|.|+..++++|..-..|-|+|-+.++
T Consensus 416 ~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q 453 (498)
T KOG4328|consen 416 RTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQ 453 (498)
T ss_pred cccccccchhheeCCCccEEEEeccCcceeEEcCCCCE
Confidence 1 1 34567899999999999988889999988776
No 144
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.90 E-value=3.5e-22 Score=172.27 Aligned_cols=203 Identities=20% Similarity=0.238 Sum_probs=159.5
Q ss_pred eecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEECCCccEEeeeccCcceeEEEEec-ceeEEE---ecCeEEE
Q 018248 43 RDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDDHENRYLGELSFRSEVKNVRLRR-DRIVVV---LNQKVYV 118 (359)
Q Consensus 43 ~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~---~d~~i~i 118 (359)
..+. ||.+.|..++|+-+ ++++.++ .|.+|++|++...+++..|.|.+-|+|++|+| |.++++ .|+.|+|
T Consensus 363 ~ef~-GHt~DILDlSWSKn-~fLLSSS----MDKTVRLWh~~~~~CL~~F~HndfVTcVaFnPvDDryFiSGSLD~KvRi 436 (712)
T KOG0283|consen 363 CEFK-GHTADILDLSWSKN-NFLLSSS----MDKTVRLWHPGRKECLKVFSHNDFVTCVAFNPVDDRYFISGSLDGKVRL 436 (712)
T ss_pred hhhh-ccchhheecccccC-CeeEecc----ccccEEeecCCCcceeeEEecCCeeEEEEecccCCCcEeecccccceEE
Confidence 3444 99999887776532 3444444 79999999999999999999999999999999 455655 8999999
Q ss_pred EEcccceeeeeEeccCCCceeeeeecCCCccEEEecCCCCeeEEEEecCCeeeEE---eecc------cccccEEEEccC
Q 018248 119 YNFTDLKLVDQIETVVNPTGLCDVSQNAGPMVMACPGLLKGQVRVEDYGTKKSKY---ITAH------ASRIASIAMTLD 189 (359)
Q Consensus 119 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~v~~~~~~~~~~~~---~~~~------~~~i~~~~~s~~ 189 (359)
|++...+.+.-... ..-|+.+++.|+|++.++ |+.+|.+++++..+..+.. +..| ...|+.+.|.|.
T Consensus 437 WsI~d~~Vv~W~Dl-~~lITAvcy~PdGk~avI---Gt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~ 512 (712)
T KOG0283|consen 437 WSISDKKVVDWNDL-RDLITAVCYSPDGKGAVI---GTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGKRITGLQFFPG 512 (712)
T ss_pred eecCcCeeEeehhh-hhhheeEEeccCCceEEE---EEeccEEEEEEccCCeEEEeeeEeeccCccccCceeeeeEecCC
Confidence 99977776655544 467899999999886333 7789999998877643322 1111 227999999975
Q ss_pred Cc-EEEEEeCCCCeEEEEEcCCCcEEEEeecCCCCcceEEEEecCCCCEEEEEcCCCcEEEEEccCCC
Q 018248 190 GR-FVATASSKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSNAQWLAASSDKGTVHVFGLKVDS 256 (359)
Q Consensus 190 ~~-~l~~~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~ 256 (359)
.. .+++.+.|.. |+|||.++.+++..|++......-....|+.||++|+++++|..|+||++....
T Consensus 513 ~~~~vLVTSnDSr-IRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~~~~ 579 (712)
T KOG0283|consen 513 DPDEVLVTSNDSR-IRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYIWKNDSFN 579 (712)
T ss_pred CCCeEEEecCCCc-eEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeecCceEEEEeCCCCc
Confidence 44 5667778888 999999999999999876555566788999999999999999999999985544
No 145
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.90 E-value=1.4e-22 Score=150.31 Aligned_cols=203 Identities=16% Similarity=0.153 Sum_probs=161.4
Q ss_pred cCcceeEEEEecceeEEE---ecCeEEEEEcccc---eeeeeEeccCCCceeeeeecCCCccEEEecCCCCeeEEEEecC
Q 018248 94 FRSEVKNVRLRRDRIVVV---LNQKVYVYNFTDL---KLVDQIETVVNPTGLCDVSQNAGPMVMACPGLLKGQVRVEDYG 167 (359)
Q Consensus 94 ~~~~v~~~~~~~~~~~~~---~d~~i~i~d~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~v~~~~~~ 167 (359)
|++.|.++...--|+.++ .|++|+|+..+.. +.+.++.+|.+++.-++|..-.-+.+||+ ++.||.|.||...
T Consensus 10 H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAS-csYDgkVIiWke~ 88 (299)
T KOG1332|consen 10 HEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILAS-CSYDGKVIIWKEE 88 (299)
T ss_pred hhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeE-eecCceEEEEecC
Confidence 778888888877788887 9999999999543 57888999999999999987555566776 7899999999987
Q ss_pred Ce---eeEEeecccccccEEEEccC--CcEEEEEeCCCCeEEEEEcCCC-cEEEEeecCCCCcceEEEEecCC---C---
Q 018248 168 TK---KSKYITAHASRIASIAMTLD--GRFVATASSKGTLIRVFNTMDG-SLLQEMRRGAERAEIYSLAFSSN---A--- 235 (359)
Q Consensus 168 ~~---~~~~~~~~~~~i~~~~~s~~--~~~l~~~~~dg~~i~iwd~~~~-~~~~~~~~~~~~~~i~~~~~s~~---~--- 235 (359)
+. .......|...|++++|.|. |-.|++++.||. |.|.+.++. .-........|+-.|++++|.|- |
T Consensus 89 ~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~-vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~ 167 (299)
T KOG1332|consen 89 NGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGK-VSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLV 167 (299)
T ss_pred CCchhhhhhhhhhcccceeecccccccceEEEEeeCCCc-EEEEEEcCCCCccchhhhhccccccceeeecCcCCCcccc
Confidence 74 34456789999999999996 558999999999 999988654 22211111237789999999985 4
Q ss_pred --------CEEEEEcCCCcEEEEEccCCCCCCCCCccccCCCCCccCCCCCceeeeeEeeeecceEEecccceeEEeecC
Q 018248 236 --------QWLAASSDKGTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSAISSFRFIRGVLPKYFSSKWSMAQFRLPE 307 (359)
Q Consensus 236 --------~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (359)
+.|++|+.|..|+||+..+++-. .+ .+++.|.
T Consensus 168 ~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~-------------------------------------~e---~~l~~H~ 207 (299)
T KOG1332|consen 168 DQGPAAKVKRLVSGGCDNLVKIWKFDSDSWK-------------------------------------LE---RTLEGHK 207 (299)
T ss_pred ccCcccccceeeccCCccceeeeecCCcchh-------------------------------------hh---hhhhhcc
Confidence 57999999999999999986411 01 1156678
Q ss_pred CcEEEeeecccC----CEEEEEecCCeEEEEEeCC
Q 018248 308 NVQYLVGFGRQN----NTIVIVGLDGSYYKCEFDP 338 (359)
Q Consensus 308 ~~v~~~~~s~~~----~~l~~~~~dg~i~v~~~~~ 338 (359)
+.|+.+||.|.- .+|++++.||++.||..+.
T Consensus 208 dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~ 242 (299)
T KOG1332|consen 208 DWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDE 242 (299)
T ss_pred hhhhhhhhccccCCCceeeEEecCCCcEEEEEecC
Confidence 899999999964 5799999999999998874
No 146
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.90 E-value=1.1e-21 Score=159.58 Aligned_cols=239 Identities=14% Similarity=0.140 Sum_probs=180.1
Q ss_pred CCCceEEEEEccCCCEEEEe-c-CCceEEEEcCCC--cceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEE
Q 018248 5 DPITIHHLALNQDHGCFATG-T-ETGFRVYLSDPY--KPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMI 80 (359)
Q Consensus 5 h~~~v~~~~~s~~g~~l~~~-~-d~~i~iw~~~~~--~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~i 80 (359)
.+..+.++.|+....+++.. + |..+++|.-... +........ ...-.|++.. ...+..+++| ..+.|+|
T Consensus 33 ~~pg~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~---gd~~~Cv~~~--s~S~y~~sgG--~~~~Vki 105 (673)
T KOG4378|consen 33 AEPGDFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPEVPRVRKLT---GDNAFCVACA--SQSLYEISGG--QSGCVKI 105 (673)
T ss_pred CCCcceeeeccccceEEEeecCCceeEEEecccCCCCccceeeccc---cchHHHHhhh--hcceeeeccC--cCceeee
Confidence 34459999999876533322 2 888999986632 222222221 1222333222 2225555665 4699999
Q ss_pred EECCCccEEeeec-cCcceeEEEEecceeEEE---ecCeEEEEEcccceeeeeEeccCC-CceeeeeecCCCccEEEecC
Q 018248 81 WDDHENRYLGELS-FRSEVKNVRLRRDRIVVV---LNQKVYVYNFTDLKLVDQIETVVN-PTGLCDVSQNAGPMVMACPG 155 (359)
Q Consensus 81 wd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~g 155 (359)
||++...+.+.++ |...|+++.++-...+++ ..|.|.|..+.+++....+....+ .+..+.+++..+. +....
T Consensus 106 wdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~--lL~~a 183 (673)
T KOG4378|consen 106 WDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRF--LLSIA 183 (673)
T ss_pred hhhHHHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecCCCCeEEEeecccccce--eeEee
Confidence 9999777777777 999999999999999998 788999999999988888876533 4557889988765 33335
Q ss_pred CCCeeEEEEecCCeee--EEeecccccccEEEEccCC-cEEEEEeCCCCeEEEEEcCCCcEEEEeecCCCCcceEEEEec
Q 018248 156 LLKGQVRVEDYGTKKS--KYITAHASRIASIAMTLDG-RFVATASSKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFS 232 (359)
Q Consensus 156 ~~d~~v~~~~~~~~~~--~~~~~~~~~i~~~~~s~~~-~~l~~~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s 232 (359)
+.+|.|.+|+.++... .....|..+...++|+|.. .+|++.+.|.. |.+||++..+....+.. ..+...++|+
T Consensus 184 sd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkk-i~~yD~~s~~s~~~l~y---~~Plstvaf~ 259 (673)
T KOG4378|consen 184 SDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKK-INIYDIRSQASTDRLTY---SHPLSTVAFS 259 (673)
T ss_pred ccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccce-EEEeecccccccceeee---cCCcceeeec
Confidence 6899999999988432 3347899999999999955 57889999999 99999998877777763 3589999999
Q ss_pred CCCCEEEEEcCCCcEEEEEccCCC
Q 018248 233 SNAQWLAASSDKGTVHVFGLKVDS 256 (359)
Q Consensus 233 ~~~~~l~~~~~dg~i~iw~~~~~~ 256 (359)
++|.+|+.|+..|.|..||++..+
T Consensus 260 ~~G~~L~aG~s~G~~i~YD~R~~k 283 (673)
T KOG4378|consen 260 ECGTYLCAGNSKGELIAYDMRSTK 283 (673)
T ss_pred CCceEEEeecCCceEEEEecccCC
Confidence 999999999999999999999876
No 147
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.89 E-value=1.8e-21 Score=164.01 Aligned_cols=273 Identities=11% Similarity=0.134 Sum_probs=202.5
Q ss_pred CCceEEEEEccCCCEEEEecCCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEECCC
Q 018248 6 PITIHHLALNQDHGCFATGTETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDDHE 85 (359)
Q Consensus 6 ~~~v~~~~~s~~g~~l~~~~d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~~~ 85 (359)
...|+.++|-|||..|+.+.+..+.+||.+.+... +++. ||.+.|.+++++.++..++..+ .|..|.+|. ..
T Consensus 12 ~hci~d~afkPDGsqL~lAAg~rlliyD~ndG~ll--qtLK-gHKDtVycVAys~dGkrFASG~----aDK~VI~W~-~k 83 (1081)
T KOG1538|consen 12 EHCINDIAFKPDGTQLILAAGSRLLVYDTSDGTLL--QPLK-GHKDTVYCVAYAKDGKRFASGS----ADKSVIIWT-SK 83 (1081)
T ss_pred ccchheeEECCCCceEEEecCCEEEEEeCCCcccc--cccc-cccceEEEEEEccCCceeccCC----CceeEEEec-cc
Confidence 34899999999999999999999999999987666 6666 9999999999998888776555 689999998 44
Q ss_pred ccEEeeeccCcceeEEEEecceeEEE--ecCeEEEEEcccceeeeeEeccCCCceeeeeecCCCccEEEecCCCCeeEEE
Q 018248 86 NRYLGELSFRSEVKNVRLRRDRIVVV--LNQKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAGPMVMACPGLLKGQVRV 163 (359)
Q Consensus 86 ~~~~~~~~~~~~v~~~~~~~~~~~~~--~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~v~~ 163 (359)
-+-+..+.|.+.|.|+.|+|-...++ .=...-+|....... ...+ ....+.+++|..+| .+++. |..+|+|.+
T Consensus 84 lEG~LkYSH~D~IQCMsFNP~~h~LasCsLsdFglWS~~qK~V-~K~k-ss~R~~~CsWtnDG--qylal-G~~nGTIsi 158 (1081)
T KOG1538|consen 84 LEGILKYSHNDAIQCMSFNPITHQLASCSLSDFGLWSPEQKSV-SKHK-SSSRIICCSWTNDG--QYLAL-GMFNGTISI 158 (1081)
T ss_pred ccceeeeccCCeeeEeecCchHHHhhhcchhhccccChhhhhH-Hhhh-hheeEEEeeecCCC--cEEEE-eccCceEEe
Confidence 45556677999999999999887777 555667787643322 1111 12233445555555 45776 778999999
Q ss_pred EecCCeeeEEee---cccccccEEEEccCC-----cEEEEEeCCCCeEEEEEcCCCcEEEEeecCCCCcceEEEEecCCC
Q 018248 164 EDYGTKKSKYIT---AHASRIASIAMTLDG-----RFVATASSKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSNA 235 (359)
Q Consensus 164 ~~~~~~~~~~~~---~~~~~i~~~~~s~~~-----~~l~~~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~ 235 (359)
-+..+++...+. +.+.+|.+++|+|.. ..+++.....+ +.+|.+ +|+.+..-+. -.-...|+.+-++|
T Consensus 159 RNk~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qT-LSFy~L-sG~~Igk~r~--L~FdP~CisYf~NG 234 (1081)
T KOG1538|consen 159 RNKNGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQT-LSFYQL-SGKQIGKDRA--LNFDPCCISYFTNG 234 (1081)
T ss_pred ecCCCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccce-eEEEEe-cceeeccccc--CCCCchhheeccCC
Confidence 766665544443 467899999999964 36778888887 888876 4555542222 12345789999999
Q ss_pred CEEEEEcCCCcEEEEEccCCCCCCCCCccccCCCCCccCCCCCceeeeeEeeeecceEEecccceeEEeecCCcEEEeee
Q 018248 236 QWLAASSDKGTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSAISSFRFIRGVLPKYFSSKWSMAQFRLPENVQYLVGF 315 (359)
Q Consensus 236 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 315 (359)
.++..|+.|+.+++|--+.-. +.. ..-...+|++++.
T Consensus 235 Ey~LiGGsdk~L~~fTR~Gvr--------------------------LGT-----------------vg~~D~WIWtV~~ 271 (1081)
T KOG1538|consen 235 EYILLGGSDKQLSLFTRDGVR--------------------------LGT-----------------VGEQDSWIWTVQA 271 (1081)
T ss_pred cEEEEccCCCceEEEeecCeE--------------------------Eee-----------------ccccceeEEEEEE
Confidence 999999999999998655422 000 0001357899999
Q ss_pred cccCCEEEEEecCCeEEEEEeCC
Q 018248 316 GRQNNTIVIVGLDGSYYKCEFDP 338 (359)
Q Consensus 316 s~~~~~l~~~~~dg~i~v~~~~~ 338 (359)
.|++++++.|+.||+|..|++-.
T Consensus 272 ~PNsQ~v~~GCqDGTiACyNl~f 294 (1081)
T KOG1538|consen 272 KPNSQYVVVGCQDGTIACYNLIF 294 (1081)
T ss_pred ccCCceEEEEEccCeeehhhhHH
Confidence 99999999999999999998754
No 148
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.89 E-value=1.8e-21 Score=156.22 Aligned_cols=235 Identities=13% Similarity=0.146 Sum_probs=170.0
Q ss_pred CCCEEEEec-CCceEEEEcCCCcceee-----------------eec-ccCCCCceeEEEEeccCCEEEEEecCCCCCCe
Q 018248 17 DHGCFATGT-ETGFRVYLSDPYKPIMR-----------------RDF-DRNPRGGTQLVSMLFRSNIICLVNSGPHQSNK 77 (359)
Q Consensus 17 ~g~~l~~~~-d~~i~iw~~~~~~~~~~-----------------~~~-~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~ 77 (359)
.|+++|.|+ |..|.|||++-....+. +.. ..+|+..|..++|...-..++ ++++ .|.+
T Consensus 191 ~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVL-aSgs--aD~T 267 (463)
T KOG0270|consen 191 AGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVL-ASGS--ADKT 267 (463)
T ss_pred CcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeE-EecC--CCce
Confidence 367999999 99999999862111100 000 126777777766654444333 3434 6999
Q ss_pred EEEEECCCccEEeeec-cCcceeEEEEeccee-EEE---ecCeEEEEEcccceeeeeEeccCCCceeeeeecCCCccEEE
Q 018248 78 VMIWDDHENRYLGELS-FRSEVKNVRLRRDRI-VVV---LNQKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAGPMVMA 152 (359)
Q Consensus 78 i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~-~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 152 (359)
|++||+.++++...+. |..+|.++.|+|... +++ .|++|.+.|.+........-...+.+..++|.|.....+++
T Consensus 268 V~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~w~~~se~~f~~ 347 (463)
T KOG0270|consen 268 VKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKVAWDPHSENSFFV 347 (463)
T ss_pred EEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEeccceEEEEecCCCceeEEE
Confidence 9999999999999999 899999999999754 444 89999999997432222222234567889999988875554
Q ss_pred ecCCCCeeEEEEecCC--eeeEEeecccccccEEEEccCCc-EEEEEeCCCCeEEEEEcCCCcEEEEeecCCCCcceEEE
Q 018248 153 CPGLLKGQVRVEDYGT--KKSKYITAHASRIASIAMTLDGR-FVATASSKGTLIRVFNTMDGSLLQEMRRGAERAEIYSL 229 (359)
Q Consensus 153 ~~g~~d~~v~~~~~~~--~~~~~~~~~~~~i~~~~~s~~~~-~l~~~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~i~~~ 229 (359)
+..||.|+-.+.+. +++.++++|.++|.++++++.-. ++++++.|+. |++|++..............-+...|+
T Consensus 348 --~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~-Vklw~~~~~~~~~v~~~~~~~~rl~c~ 424 (463)
T KOG0270|consen 348 --STDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKV-VKLWKFDVDSPKSVKEHSFKLGRLHCF 424 (463)
T ss_pred --ecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccce-EEEEeecCCCCcccccccccccceeec
Confidence 56899999955543 78999999999999999998654 7889999999 999998755443222211122346677
Q ss_pred EecCCCC-EEEEEcCCCcEEEEEccCCCC
Q 018248 230 AFSSNAQ-WLAASSDKGTVHVFGLKVDSG 257 (359)
Q Consensus 230 ~~s~~~~-~l~~~~~dg~i~iw~~~~~~~ 257 (359)
++.|+-. .|+.|+..+.++|||+.+..+
T Consensus 425 ~~~~~~a~~la~GG~k~~~~vwd~~~~~~ 453 (463)
T KOG0270|consen 425 ALDPDVAFTLAFGGEKAVLRVWDIFTNSP 453 (463)
T ss_pred ccCCCcceEEEecCccceEEEeecccChh
Confidence 7888654 577788888899999988764
No 149
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.89 E-value=5.4e-22 Score=166.22 Aligned_cols=114 Identities=11% Similarity=0.112 Sum_probs=93.2
Q ss_pred CCCCceEEEEEcc-CCCEEEEec-CCceEEEEcCCCcc-ee---eeecccCC-CCceeEEEEeccCCEEEEEecCCCCCC
Q 018248 4 PDPITIHHLALNQ-DHGCFATGT-ETGFRVYLSDPYKP-IM---RRDFDRNP-RGGTQLVSMLFRSNIICLVNSGPHQSN 76 (359)
Q Consensus 4 ~h~~~v~~~~~s~-~g~~l~~~~-d~~i~iw~~~~~~~-~~---~~~~~~~h-~~~v~~~~~~~~~~~~~~~~~~~~~d~ 76 (359)
.|.+.|+.+.|+| +..+||+|+ |..|+||.+..+-. .+ ...+ || .-.+.++.+++..+.++.++ .-|
T Consensus 77 ~H~d~VtDl~FspF~D~LLAT~S~D~~VKiW~lp~g~~q~LSape~~~--g~~~~~vE~l~fHpTaDgil~s~----a~g 150 (1012)
T KOG1445|consen 77 AHGDQVTDLGFSPFADELLATCSRDEPVKIWKLPRGHSQKLSAPEIDV--GGGNVIVECLRFHPTADGILASG----AHG 150 (1012)
T ss_pred cccceeeccCccccchhhhhcccCCCeeEEEecCCCcccccCCcceee--cCCceEEEEeecccCcCceEEec----cCc
Confidence 5889999999999 556789999 99999999973322 11 1222 33 34577888988888888777 459
Q ss_pred eEEEEECCCccEEeeec-cCcceeEEEEecceeEEE---ecCeEEEEEccc
Q 018248 77 KVMIWDDHENRYLGELS-FRSEVKNVRLRRDRIVVV---LNQKVYVYNFTD 123 (359)
Q Consensus 77 ~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~---~d~~i~i~d~~~ 123 (359)
.+++||+.+++.+.++. |.+.|.++.|+.||.+++ .|..|+|||.+.
T Consensus 151 ~v~i~D~stqk~~~el~~h~d~vQSa~WseDG~llatscKdkqirifDPRa 201 (1012)
T KOG1445|consen 151 SVYITDISTQKTAVELSGHTDKVQSADWSEDGKLLATSCKDKQIRIFDPRA 201 (1012)
T ss_pred eEEEEEcccCceeecccCCchhhhccccccCCceEeeecCCcceEEeCCcc
Confidence 99999999999999998 999999999999999998 899999999753
No 150
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.89 E-value=2.5e-20 Score=142.26 Aligned_cols=205 Identities=13% Similarity=0.199 Sum_probs=159.8
Q ss_pred CCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEECCCcc----------EEe--eec----cCcceeEEEEecc--eeE
Q 018248 48 NPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDDHENR----------YLG--ELS----FRSEVKNVRLRRD--RIV 109 (359)
Q Consensus 48 ~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~----------~~~--~~~----~~~~v~~~~~~~~--~~~ 109 (359)
.|.+.|..+.+.+......+.++ .||.|.+||++... .+. ..+ |...|.++.|-|- |.+
T Consensus 41 ~HgGsvNsL~id~tegrymlSGg---adgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmF 117 (397)
T KOG4283|consen 41 PHGGSVNSLQIDLTEGRYMLSGG---ADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMF 117 (397)
T ss_pred cCCCccceeeeccccceEEeecC---CCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCcee
Confidence 68999999998876665555444 68999999987532 111 111 6678999999884 444
Q ss_pred EE--ecCeEEEEEcccceeeeeEeccCCCceeeeeecCCCccEEEecCCCCeeEEE-EecCCeeeEEeecccccccEEEE
Q 018248 110 VV--LNQKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAGPMVMACPGLLKGQVRV-EDYGTKKSKYITAHASRIASIAM 186 (359)
Q Consensus 110 ~~--~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~v~~-~~~~~~~~~~~~~~~~~i~~~~~ 186 (359)
.. .|.++++||..+.+....++. ++.+...+++|-...-.|+++|..+-.|++ +...+.....+.+|.+.|.++.|
T Consensus 118 tssSFDhtlKVWDtnTlQ~a~~F~m-e~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~W 196 (397)
T KOG4283|consen 118 TSSSFDHTLKVWDTNTLQEAVDFKM-EGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEW 196 (397)
T ss_pred ecccccceEEEeecccceeeEEeec-CceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEe
Confidence 44 899999999999988888765 455777888886653334444888999999 66777888999999999999999
Q ss_pred ccCCc-EEEEEeCCCCeEEEEEcCCC-cEEEEee------------cCCCCcceEEEEecCCCCEEEEEcCCCcEEEEEc
Q 018248 187 TLDGR-FVATASSKGTLIRVFNTMDG-SLLQEMR------------RGAERAEIYSLAFSSNAQWLAASSDKGTVHVFGL 252 (359)
Q Consensus 187 s~~~~-~l~~~~~dg~~i~iwd~~~~-~~~~~~~------------~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~ 252 (359)
+|... .|++|+.||. |++||++.. .+...+. ...|.+.++.++|+.|+.++++++.|..+++|+.
T Consensus 197 sp~~e~vLatgsaDg~-irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~ 275 (397)
T KOG4283|consen 197 SPSSEWVLATGSADGA-IRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNM 275 (397)
T ss_pred ccCceeEEEecCCCce-EEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEEeec
Confidence 99877 5789999999 999999754 2332222 2236788999999999999999999999999999
Q ss_pred cCCCC
Q 018248 253 KVDSG 257 (359)
Q Consensus 253 ~~~~~ 257 (359)
.+++.
T Consensus 276 ~~G~n 280 (397)
T KOG4283|consen 276 ESGRN 280 (397)
T ss_pred ccCcc
Confidence 99874
No 151
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.89 E-value=4.7e-21 Score=160.43 Aligned_cols=281 Identities=10% Similarity=0.095 Sum_probs=190.3
Q ss_pred EEEEEcc---CCCEEEEec-CCceEEEEcCCCcce-eee--ecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEE
Q 018248 10 HHLALNQ---DHGCFATGT-ETGFRVYLSDPYKPI-MRR--DFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWD 82 (359)
Q Consensus 10 ~~~~~s~---~g~~l~~~~-d~~i~iw~~~~~~~~-~~~--~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd 82 (359)
.+..|++ ....|+.+. ||.|.++|....... ..+ .....|...|..+.|.+....++.++ .|.++++||
T Consensus 53 f~~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsas----GDsT~r~Wd 128 (720)
T KOG0321|consen 53 FADSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSAS----GDSTIRPWD 128 (720)
T ss_pred ccccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEcc----CCceeeeee
Confidence 4466665 234678888 999999998743222 111 11137999999999999555555555 479999999
Q ss_pred CCCccEEee--e-ccCcceeEEEEecceeEEE----ecCeEEEEEccccee---------------------------ee
Q 018248 83 DHENRYLGE--L-SFRSEVKNVRLRRDRIVVV----LNQKVYVYNFTDLKL---------------------------VD 128 (359)
Q Consensus 83 ~~~~~~~~~--~-~~~~~v~~~~~~~~~~~~~----~d~~i~i~d~~~~~~---------------------------~~ 128 (359)
+++.+++.. + .|...|.+++|.|....++ .||.|.|||++.... +.
T Consensus 129 vk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~ 208 (720)
T KOG0321|consen 129 VKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIR 208 (720)
T ss_pred eccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhcccc
Confidence 999988776 3 4999999999999876655 899999999853220 00
Q ss_pred eEeccCCCcee---eeeecCCCccEEEecCCCCeeEEEEecCCee-------e--EEeecc---cccccEEEEccCCcEE
Q 018248 129 QIETVVNPTGL---CDVSQNAGPMVMACPGLLKGQVRVEDYGTKK-------S--KYITAH---ASRIASIAMTLDGRFV 193 (359)
Q Consensus 129 ~~~~~~~~~~~---~~~~~~~~~~~l~~~g~~d~~v~~~~~~~~~-------~--~~~~~~---~~~i~~~~~s~~~~~l 193 (359)
....+...+.. +.+..|.. .||++|..|+.|+||+++... . ..+..| .-.+.++.....|.+|
T Consensus 209 k~kA~s~ti~ssvTvv~fkDe~--tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L 286 (720)
T KOG0321|consen 209 KWKAASNTIFSSVTVVLFKDES--TLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYL 286 (720)
T ss_pred ccccccCceeeeeEEEEEeccc--eeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeE
Confidence 00111112222 23334443 477767779999999987522 1 112223 3356778888888999
Q ss_pred EEEeCCCCeEEEEEcCCCc--EEEEeecCCCCcceEEEEecCCCCEEEEEcCCCcEEEEEccCCCCCCCCCccccCCCCC
Q 018248 194 ATASSKGTLIRVFNTMDGS--LLQEMRRGAERAEIYSLAFSSNAQWLAASSDKGTVHVFGLKVDSGSPGTSKLHSASEPN 271 (359)
Q Consensus 194 ~~~~~dg~~i~iwd~~~~~--~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~ 271 (359)
.+.+.|+. |++|++.+.. ++..+.+......-..-..+||+.+|++|+.|...++|.+.+.+..+
T Consensus 287 ~AsCtD~s-Iy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~------------ 353 (720)
T KOG0321|consen 287 FASCTDNS-IYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPP------------ 353 (720)
T ss_pred EEEecCCc-EEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCCh------------
Confidence 88888999 9999997643 34444432222222334578999999999999999999999977432
Q ss_pred ccCCCCCceeeeeEeeeecceEEecccceeEEeecCCcEEEeeecccC-CEEEEEecCCeEEEEEeCC
Q 018248 272 LSSKNSSAISSFRFIRGVLPKYFSSKWSMAQFRLPENVQYLVGFGRQN-NTIVIVGLDGSYYKCEFDP 338 (359)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~v~~~~~ 338 (359)
..+..|.-.|+.++|.|.. .-++++++|-.+.+|++..
T Consensus 354 -----------------------------~~l~Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~ 392 (720)
T KOG0321|consen 354 -----------------------------ALLLGHTREVTTVRWLPSATTPVATCSDDFRVKIWRLSN 392 (720)
T ss_pred -----------------------------hhhhCcceEEEEEeeccccCCCceeeccCcceEEEeccC
Confidence 0022234467889997743 4567779999999999954
No 152
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.88 E-value=1.3e-21 Score=167.18 Aligned_cols=237 Identities=12% Similarity=0.186 Sum_probs=172.7
Q ss_pred CceeEEEEeccCCEEEEEecCCCCCCeEEEEECCCcc----EEeeec----cCcceeEEEEec-ceeEEE---ecCeEEE
Q 018248 51 GGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDDHENR----YLGELS----FRSEVKNVRLRR-DRIVVV---LNQKVYV 118 (359)
Q Consensus 51 ~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~----~~~~~~----~~~~v~~~~~~~-~~~~~~---~d~~i~i 118 (359)
....+++...+.+.++.++ ...+++|.+.... +...++ ....+.++.|+. +.++++ ..|.|.+
T Consensus 40 ~~~nAIs~nr~~~qiv~AG-----rs~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~nG~i~v 114 (839)
T KOG0269|consen 40 AKANAISVNRDINQIVVAG-----RSLLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCSTNGVISV 114 (839)
T ss_pred cccceEeecCCcceeEEec-----ccceeeEeeCcccCCcceeeecccccceeeehhhcccccchhhhheeecCCCcEEE
Confidence 4445566666667777666 3567777665432 222212 123455677764 245555 8999999
Q ss_pred EEccc---ceeeeeEeccCCCceeeeeecCCCccEEEecCCCCeeEEEEecCC-eeeEEeecccccccEEEEcc-CCcEE
Q 018248 119 YNFTD---LKLVDQIETVVNPTGLCDVSQNAGPMVMACPGLLKGQVRVEDYGT-KKSKYITAHASRIASIAMTL-DGRFV 193 (359)
Q Consensus 119 ~d~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~v~~~~~~~-~~~~~~~~~~~~i~~~~~s~-~~~~l 193 (359)
||+.. .+.+..+..|...+..+.|++.... +|+ +|+.||.|++|+.+. +...++.+....|..++|+| .+..+
T Consensus 115 Wdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~-ili-SGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~F 192 (839)
T KOG0269|consen 115 WDLNKSIRNKLLTVFNEHERSANKLDFHSTEPN-ILI-SGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGNKF 192 (839)
T ss_pred EecCccccchhhhHhhhhccceeeeeeccCCcc-EEE-ecCCCceEEEEeeecccccccccccchhhhceeeccCCCceE
Confidence 99965 5666778889999999999988776 333 499999999988776 45566777888999999998 46688
Q ss_pred EEEeCCCCeEEEEEcCCCc-EEEEeecCCCCcceEEEEecCCCCEEEEEcCCCcEEEEEccCCCCCCCCCccccCCCCCc
Q 018248 194 ATASSKGTLIRVFNTMDGS-LLQEMRRGAERAEIYSLAFSSNAQWLAASSDKGTVHVFGLKVDSGSPGTSKLHSASEPNL 272 (359)
Q Consensus 194 ~~~~~dg~~i~iwd~~~~~-~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~ 272 (359)
+++.+.|. +.+||++... +...+.. |.++|.++.|+|++.+||||+.|++|+||++...+..+
T Consensus 193 ~s~~dsG~-lqlWDlRqp~r~~~k~~A--H~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~------------- 256 (839)
T KOG0269|consen 193 ASIHDSGY-LQLWDLRQPDRCEKKLTA--HNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKP------------- 256 (839)
T ss_pred EEecCCce-EEEeeccCchhHHHHhhc--ccCceEEEeecCCCceeeecCCCccEEEEeccCCCccc-------------
Confidence 89999998 9999998754 4445555 89999999999999999999999999999999766331
Q ss_pred cCCCCCceeeeeEeeeecceEEecccceeEEeecCCcEEEeeecccCCE-EEEEec--CCeEEEEEeCC
Q 018248 273 SSKNSSAISSFRFIRGVLPKYFSSKWSMAQFRLPENVQYLVGFGRQNNT-IVIVGL--DGSYYKCEFDP 338 (359)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~-l~~~~~--dg~i~v~~~~~ 338 (359)
.. ... ...++..+.|-|+.++ |++++. |-.|+||++..
T Consensus 257 -------~~-----------tIn----------Tiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrR 297 (839)
T KOG0269|consen 257 -------KH-----------TIN----------TIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRR 297 (839)
T ss_pred -------ee-----------EEe----------ecceeeeeeeccCccchhhhhhccccceEEEEeecc
Confidence 00 000 1146788999998755 444443 88999999864
No 153
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.87 E-value=7.2e-21 Score=161.55 Aligned_cols=238 Identities=14% Similarity=0.198 Sum_probs=181.2
Q ss_pred CCceEEEEEccCCCEEEEec-CCceEEEEcCCCcceeeeecccCCCCceeEEEEeccC-CEEEEEecCCCCCCeEEEEEC
Q 018248 6 PITIHHLALNQDHGCFATGT-ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRS-NIICLVNSGPHQSNKVMIWDD 83 (359)
Q Consensus 6 ~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~~~~~~~~~~~d~~i~iwd~ 83 (359)
...|.+++.||+|++||+|. -|.++||++...+.....+ +|..+|.++.+++.. ...++++++ .|.-|.++|+
T Consensus 459 r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~e---AHesEilcLeyS~p~~~~kLLASas--rdRlIHV~Dv 533 (1080)
T KOG1408|consen 459 RFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFME---AHESEILCLEYSFPVLTNKLLASAS--RDRLIHVYDV 533 (1080)
T ss_pred ccceEEEEECCCcceecccCccCceEEEEehhhhhhhhee---cccceeEEEeecCchhhhHhhhhcc--CCceEEEEec
Confidence 46799999999999999999 9999999999766654444 799999999988643 223344444 6899999998
Q ss_pred CCc-cEEeeec-cCcceeEEEEecce---eEEE--ecCeEEEEEcccceeeeeEec-----cCCCceeeeeecCCCccEE
Q 018248 84 HEN-RYLGELS-FRSEVKNVRLRRDR---IVVV--LNQKVYVYNFTDLKLVDQIET-----VVNPTGLCDVSQNAGPMVM 151 (359)
Q Consensus 84 ~~~-~~~~~~~-~~~~v~~~~~~~~~---~~~~--~d~~i~i~d~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~l 151 (359)
... .+++++. |...|+++.|.-+| +.+. .|..|..--.+.......+.. .......+++.|..+. +
T Consensus 534 ~rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~--v 611 (1080)
T KOG1408|consen 534 KRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKL--V 611 (1080)
T ss_pred ccccchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcce--E
Confidence 765 5666776 89999999998766 3333 566554332221111111111 1233455666666654 5
Q ss_pred EecCCCCeeEEEEec-CCeeeEEee---cccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcEEEEeecCCCCcceE
Q 018248 152 ACPGLLKGQVRVEDY-GTKKSKYIT---AHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRRGAERAEIY 227 (359)
Q Consensus 152 ~~~g~~d~~v~~~~~-~~~~~~~~~---~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~i~ 227 (359)
++ ++.|..|+|++. .++..+.|+ .|.+..-.+...|.|.|||+.+.|.+ +.++|..+|+++.++.+ |...|+
T Consensus 612 ~t-~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdkt-l~~~Df~sgEcvA~m~G--HsE~VT 687 (1080)
T KOG1408|consen 612 VT-VCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKT-LCFVDFVSGECVAQMTG--HSEAVT 687 (1080)
T ss_pred EE-EecccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCc-eEEEEeccchhhhhhcC--cchhee
Confidence 54 558999999655 456777775 46677889999999999999999999 99999999999999988 778999
Q ss_pred EEEecCCCCEEEEEcCCCcEEEEEccC
Q 018248 228 SLAFSSNAQWLAASSDKGTVHVFGLKV 254 (359)
Q Consensus 228 ~~~~s~~~~~l~~~~~dg~i~iw~~~~ 254 (359)
.+.|.+|.+.|++.+.||.|.||.+..
T Consensus 688 G~kF~nDCkHlISvsgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 688 GVKFLNDCKHLISVSGDGCIFVWKLPL 714 (1080)
T ss_pred eeeecccchhheeecCCceEEEEECch
Confidence 999999999999999999999999865
No 154
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.87 E-value=1.3e-20 Score=156.80 Aligned_cols=240 Identities=14% Similarity=0.147 Sum_probs=181.5
Q ss_pred CCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEECCCccEEeeeccCcceeEEEEecceeE--EE--ecCeEEEEEccc
Q 018248 48 NPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDDHENRYLGELSFRSEVKNVRLRRDRIV--VV--LNQKVYVYNFTD 123 (359)
Q Consensus 48 ~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~--~~--~d~~i~i~d~~~ 123 (359)
||.+.|.+++..+.+.+++..+ .||+|+||.+.+|.++..+...+.|.+++|+|.+.. ++ .+..+.+.+..-
T Consensus 398 GHtg~Vr~iSvdp~G~wlasGs----dDGtvriWEi~TgRcvr~~~~d~~I~~vaw~P~~~~~vLAvA~~~~~~ivnp~~ 473 (733)
T KOG0650|consen 398 GHTGLVRSISVDPSGEWLASGS----DDGTVRIWEIATGRCVRTVQFDSEIRSVAWNPLSDLCVLAVAVGECVLIVNPIF 473 (733)
T ss_pred ccCCeEEEEEecCCcceeeecC----CCCcEEEEEeecceEEEEEeecceeEEEEecCCCCceeEEEEecCceEEeCccc
Confidence 9999999999998888777665 799999999999999999999999999999997532 22 333344433211
Q ss_pred ce-------------------------------------eeeeEeccCCCceeeeeecCCCccEEEecCCCCeeEEEEec
Q 018248 124 LK-------------------------------------LVDQIETVVNPTGLCDVSQNAGPMVMACPGLLKGQVRVEDY 166 (359)
Q Consensus 124 ~~-------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~v~~~~~ 166 (359)
|. -+...-.+...+..+.|+..|+++..++..+....|.|..+
T Consensus 474 G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQL 553 (733)
T KOG0650|consen 474 GDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQL 553 (733)
T ss_pred cchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEEEEec
Confidence 10 01122235556677778777777554443334456666555
Q ss_pred CCe-eeEEeecccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcEEEEeecCCCCcceEEEEecCCCCEEEEEcCCC
Q 018248 167 GTK-KSKYITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSNAQWLAASSDKG 245 (359)
Q Consensus 167 ~~~-~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg 245 (359)
... ....|....+.|.++.|+|...+|++++... |+|||+...+.++.+.. ....|.+++.+|.|.-|+.++.|+
T Consensus 554 SK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq~~--vRiYdL~kqelvKkL~t--g~kwiS~msihp~GDnli~gs~d~ 629 (733)
T KOG0650|consen 554 SKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQRS--VRIYDLSKQELVKKLLT--GSKWISSMSIHPNGDNLILGSYDK 629 (733)
T ss_pred ccccccCchhhcCCceeEEEecCCCceEEEEeccc--eEEEehhHHHHHHHHhc--CCeeeeeeeecCCCCeEEEecCCC
Confidence 443 3334556678899999999999998887764 99999988877777765 346899999999999999999999
Q ss_pred cEEEEEccCCCCCCCCCccccCCCCCccCCCCCceeeeeEeeeecceEEecccceeEEeecCCcEEEeeecccCCEEEEE
Q 018248 246 TVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSAISSFRFIRGVLPKYFSSKWSMAQFRLPENVQYLVGFGRQNNTIVIV 325 (359)
Q Consensus 246 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~ 325 (359)
.+..||+.-... .+.+++.|...++.++|++.=..+++|
T Consensus 630 k~~WfDldlssk-----------------------------------------Pyk~lr~H~~avr~Va~H~ryPLfas~ 668 (733)
T KOG0650|consen 630 KMCWFDLDLSSK-----------------------------------------PYKTLRLHEKAVRSVAFHKRYPLFASG 668 (733)
T ss_pred eeEEEEcccCcc-----------------------------------------hhHHhhhhhhhhhhhhhccccceeeee
Confidence 999999987652 233466777889999999999999999
Q ss_pred ecCCeEEEEEe
Q 018248 326 GLDGSYYKCEF 336 (359)
Q Consensus 326 ~~dg~i~v~~~ 336 (359)
+.||.+.||.-
T Consensus 669 sdDgtv~Vfhg 679 (733)
T KOG0650|consen 669 SDDGTVIVFHG 679 (733)
T ss_pred cCCCcEEEEee
Confidence 99999999863
No 155
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.87 E-value=1.8e-20 Score=152.74 Aligned_cols=264 Identities=9% Similarity=0.129 Sum_probs=181.8
Q ss_pred EEEecCCceEEEEcCCCcceeeeecccCCC--CceeEEEEeccCCEEEEEecCCCCCCeEEEEECCCcc--EEeeec--c
Q 018248 21 FATGTETGFRVYLSDPYKPIMRRDFDRNPR--GGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDDHENR--YLGELS--F 94 (359)
Q Consensus 21 l~~~~d~~i~iw~~~~~~~~~~~~~~~~h~--~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~--~~~~~~--~ 94 (359)
.++.+...+++||....+...... .|. ..+..+.|.... .+++++.+ .|..+++|. +.|+ .+..+. .
T Consensus 6 ~~aS~gd~~kl~D~s~~~~~~~~~---~~t~~pg~~s~~w~~~n-~lvvas~~--gdk~~~~~~-K~g~~~~Vp~~~k~~ 78 (673)
T KOG4378|consen 6 HVASTGDKTKLSDFSDLETKSEYV---HQTAEPGDFSFNWQRRN-FLVVASMA--GDKVMRIKE-KDGKTPEVPRVRKLT 78 (673)
T ss_pred eeeccCCceEEeecccccCccccc---cCCCCCcceeeeccccc-eEEEeecC--CceeEEEec-ccCCCCccceeeccc
Confidence 334446678999987544332111 122 234555554333 35555544 589999997 4443 111111 2
Q ss_pred CcceeEEEEecceeEEE---ecCeEEEEEcccceeeeeEeccCCCceeeeeecCCCccEEEecCCCCeeEEEEecC-Cee
Q 018248 95 RSEVKNVRLRRDRIVVV---LNQKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAGPMVMACPGLLKGQVRVEDYG-TKK 170 (359)
Q Consensus 95 ~~~v~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~v~~~~~~-~~~ 170 (359)
...-.|++......+++ ..+.|+|||++...+.+.++.|...|.++.+.....+ +|+ ++..|.|.|-... +..
T Consensus 79 gd~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~Dey--iAs-vs~gGdiiih~~~t~~~ 155 (673)
T KOG4378|consen 79 GDNAFCVACASQSLYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEY--IAS-VSDGGDIIIHGTKTKQK 155 (673)
T ss_pred cchHHHHhhhhcceeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCcce--eEE-eccCCcEEEEecccCcc
Confidence 23445555555556766 7889999999876677778889988888888776654 776 6678888884444 333
Q ss_pred eEEeecc-cccccEEEEccCCc-EEEEEeCCCCeEEEEEcCCCcEEEEeecCCCCcceEEEEecCC-CCEEEEEcCCCcE
Q 018248 171 SKYITAH-ASRIASIAMTLDGR-FVATASSKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSN-AQWLAASSDKGTV 247 (359)
Q Consensus 171 ~~~~~~~-~~~i~~~~~s~~~~-~l~~~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~-~~~l~~~~~dg~i 247 (359)
...+... ...+.-+.|+|..+ +|.+++.+|. |.+||+....++..+.. .|.++...++|+|. ..+|++.+.|..|
T Consensus 156 tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~-VtlwDv~g~sp~~~~~~-~HsAP~~gicfspsne~l~vsVG~Dkki 233 (673)
T KOG4378|consen 156 TTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGA-VTLWDVQGMSPIFHASE-AHSAPCRGICFSPSNEALLVSVGYDKKI 233 (673)
T ss_pred ccceecCCCCeEEEeecccccceeeEeeccCCe-EEEEeccCCCcccchhh-hccCCcCcceecCCccceEEEecccceE
Confidence 4444433 34566899999877 5567888998 99999988777777653 38889999999995 4578899999999
Q ss_pred EEEEccCCCCCCCCCccccCCCCCccCCCCCceeeeeEeeeecceEEecccceeEEeecCCcEEEeeecccCCEEEEEec
Q 018248 248 HVFGLKVDSGSPGTSKLHSASEPNLSSKNSSAISSFRFIRGVLPKYFSSKWSMAQFRLPENVQYLVGFGRQNNTIVIVGL 327 (359)
Q Consensus 248 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~ 327 (359)
.+||........ .+. + ..+...++|+++|.+|++|..
T Consensus 234 ~~yD~~s~~s~~---------------------------------~l~-------y---~~Plstvaf~~~G~~L~aG~s 270 (673)
T KOG4378|consen 234 NIYDIRSQASTD---------------------------------RLT-------Y---SHPLSTVAFSECGTYLCAGNS 270 (673)
T ss_pred EEeecccccccc---------------------------------eee-------e---cCCcceeeecCCceEEEeecC
Confidence 999999765211 000 0 124578999999999999999
Q ss_pred CCeEEEEEeCCC
Q 018248 328 DGSYYKCEFDPM 339 (359)
Q Consensus 328 dg~i~v~~~~~~ 339 (359)
.|.|+.|++...
T Consensus 271 ~G~~i~YD~R~~ 282 (673)
T KOG4378|consen 271 KGELIAYDMRST 282 (673)
T ss_pred CceEEEEecccC
Confidence 999999998754
No 156
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.87 E-value=1.2e-20 Score=155.08 Aligned_cols=260 Identities=10% Similarity=0.121 Sum_probs=187.6
Q ss_pred CCCCceEEEEEccCCCEEEEecCCceEEEEcCCCcceeeeecccCCCCceeEEE-Eec-------cCCEEEEEecCCCCC
Q 018248 4 PDPITIHHLALNQDHGCFATGTETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVS-MLF-------RSNIICLVNSGPHQS 75 (359)
Q Consensus 4 ~h~~~v~~~~~s~~g~~l~~~~d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~-~~~-------~~~~~~~~~~~~~~d 75 (359)
.|...|.|+.|+.+...+.+++|..+.+|.--+.+......+. ..-+.... .-+ ..+.+++++ .|
T Consensus 12 r~~e~vc~v~w~~~eei~~~~dDh~~~~~~~~~~~s~~~~~~p---~df~pt~~h~~~rs~~~g~~~d~~~i~s----~D 84 (737)
T KOG1524|consen 12 RNSEKVCCVDWSSNEEIYFVSDDHQIFKWSDVSRDSVEVAKLP---DDFVPTDMHLGGRSSGGGKGSDTLLICS----ND 84 (737)
T ss_pred ccceeEEeecccccceEEEeccCceEEEeecccchhhhhhhCC---cccCCccccccccccCCCCCcceEEEEc----CC
Confidence 4677888999999999998888777766654322222111111 11111100 000 123455555 68
Q ss_pred CeEEEEECCCccEEeeec-cCcceeEEEEecceeEEE---ecCeEEEEEcccceeeeeEeccCCCceeeeeecCCCccEE
Q 018248 76 NKVMIWDDHENRYLGELS-FRSEVKNVRLRRDRIVVV---LNQKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAGPMVM 151 (359)
Q Consensus 76 ~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 151 (359)
|.+.+.+ +.++....+. |.+.+.+-.|+|+|.-++ .||.|++|.- +|-...++.....++.+++|.|+.+.++.
T Consensus 85 Gkf~il~-k~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSr-sGMLRStl~Q~~~~v~c~~W~p~S~~vl~ 162 (737)
T KOG1524|consen 85 GRFVILN-KSARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSR-SGMLRSTVVQNEESIRCARWAPNSNSIVF 162 (737)
T ss_pred ceEEEec-ccchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEec-cchHHHHHhhcCceeEEEEECCCCCceEE
Confidence 9999998 7777777777 999999999999998776 9999999994 56555555556778999999999887433
Q ss_pred EecCCCCeeEEEEec-CCeeeEEeecccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcEEEEeecCCCCcceEEEE
Q 018248 152 ACPGLLKGQVRVEDY-GTKKSKYITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLA 230 (359)
Q Consensus 152 ~~~g~~d~~v~~~~~-~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~ 230 (359)
+ ..+.+.+-.. ....+...++|.+-|.++.|+|...++++|++|-. .++||. .|..+..-.. |.-+|++++
T Consensus 163 -c---~g~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~k-fKvWD~-~G~~Lf~S~~--~ey~ITSva 234 (737)
T KOG1524|consen 163 -C---QGGHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFR-FKIWDA-QGANLFTSAA--EEYAITSVA 234 (737)
T ss_pred -e---cCCeEEEeecccccceeEEeccCcEEEEeecCccccceeecCCcee-EEeecc-cCcccccCCh--hccceeeee
Confidence 3 3457777333 33456678899999999999999999999999999 999995 5666655544 677999999
Q ss_pred ecCCCCEEEEEcCCCcEEEEEccCCCCCCCCCccccCCCCCccCCCCCceeeeeEeeeecceEEecccceeEEeecCCcE
Q 018248 231 FSSNAQWLAASSDKGTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSAISSFRFIRGVLPKYFSSKWSMAQFRLPENVQ 310 (359)
Q Consensus 231 ~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 310 (359)
|.|+ +.++.++.. ++| ++++. .|.|
T Consensus 235 ~npd-~~~~v~S~n-t~R---~~~p~--------------------------------------------------~GSi 259 (737)
T KOG1524|consen 235 FNPE-KDYLLWSYN-TAR---FSSPR--------------------------------------------------VGSI 259 (737)
T ss_pred eccc-cceeeeeee-eee---ecCCC--------------------------------------------------ccce
Confidence 9999 555555533 344 22221 2577
Q ss_pred EEeeecccCCEEEEEecCCeEEEEE
Q 018248 311 YLVGFGRQNNTIVIVGLDGSYYKCE 335 (359)
Q Consensus 311 ~~~~~s~~~~~l~~~~~dg~i~v~~ 335 (359)
..++||+||.+++.|+..|.+.+-.
T Consensus 260 fnlsWS~DGTQ~a~gt~~G~v~~A~ 284 (737)
T KOG1524|consen 260 FNLSWSADGTQATCGTSTGQLIVAY 284 (737)
T ss_pred EEEEEcCCCceeeccccCceEEEee
Confidence 8899999999999999999876643
No 157
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.87 E-value=8.4e-20 Score=139.02 Aligned_cols=302 Identities=14% Similarity=0.184 Sum_probs=199.5
Q ss_pred CCCEEEEec-----CCceEEEEcCCCcc-eeeeecccCCCCceeEEEEeccCCEE-EEEecCCCCC----CeEEEEECCC
Q 018248 17 DHGCFATGT-----ETGFRVYLSDPYKP-IMRRDFDRNPRGGTQLVSMLFRSNII-CLVNSGPHQS----NKVMIWDDHE 85 (359)
Q Consensus 17 ~g~~l~~~~-----d~~i~iw~~~~~~~-~~~~~~~~~h~~~v~~~~~~~~~~~~-~~~~~~~~~d----~~i~iwd~~~ 85 (359)
|.-.|.+|+ |+.|.+.++++... +....|. .|.+.|..++-+|....+ +.+.... .| ..+.||.+..
T Consensus 25 d~icFlvgTnslK~dNqVhll~~d~e~s~l~skvf~-h~agEvw~las~P~d~~ilaT~yn~~-s~s~vl~~aaiw~ipe 102 (370)
T KOG1007|consen 25 DHICFLVGTNSLKEDNQVHLLRLDSEGSELLSKVFF-HHAGEVWDLASSPFDQRILATVYNDT-SDSGVLTGAAIWQIPE 102 (370)
T ss_pred cceEEEEeccccCCcceeEEEEecCccchhhhhhhh-cCCcceehhhcCCCCCceEEEEEecc-CCCcceeeEEEEeccc
Confidence 334556664 57788888875443 3333443 678899998888766544 4333211 12 3568998764
Q ss_pred c---------cEEeeec--cCcceeEEEEecceeEEE--ecCeEEEEEccccee-eeeEec-----cCCCceeeeeecCC
Q 018248 86 N---------RYLGELS--FRSEVKNVRLRRDRIVVV--LNQKVYVYNFTDLKL-VDQIET-----VVNPTGLCDVSQNA 146 (359)
Q Consensus 86 ~---------~~~~~~~--~~~~v~~~~~~~~~~~~~--~d~~i~i~d~~~~~~-~~~~~~-----~~~~~~~~~~~~~~ 146 (359)
. +++..+. +-+.|.|+.|.|++..++ .|..|.+|++..+.. ...+.. +......-+|+|..
T Consensus 103 ~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns~klasm~dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHH 182 (370)
T KOG1007|consen 103 PLGQSNSSTLECVASLDTEAVGKINCVEWEPNSDKLASMDDNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHH 182 (370)
T ss_pred ccCccccchhhHhhcCCHHHhCceeeEEEcCCCCeeEEeccCceEEEEcccCcchheeecccccccccceecccccCCCC
Confidence 3 2333443 446899999999987777 899999999976554 333322 23345567899976
Q ss_pred CccEEEecCCCCeeEEEEecCC-eee-EEeecccccccEEEEccCCc-EEEEEeCCCCeEEEEEcCCC-cEEEEeecCCC
Q 018248 147 GPMVMACPGLLKGQVRVEDYGT-KKS-KYITAHASRIASIAMTLDGR-FVATASSKGTLIRVFNTMDG-SLLQEMRRGAE 222 (359)
Q Consensus 147 ~~~~l~~~g~~d~~v~~~~~~~-~~~-~~~~~~~~~i~~~~~s~~~~-~l~~~~~dg~~i~iwd~~~~-~~~~~~~~~~~ 222 (359)
+...++++ .|+++..|+.+. +.. ..-.+|...+..+.|+|+.+ +|++++.||. |+|||.+.. .++.++.. |
T Consensus 183 dgnqv~tt--~d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgy-vriWD~R~tk~pv~el~~--H 257 (370)
T KOG1007|consen 183 DGNQVATT--SDSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGY-VRIWDTRKTKFPVQELPG--H 257 (370)
T ss_pred ccceEEEe--CCCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCcc-EEEEeccCCCccccccCC--C
Confidence 66667764 588999988775 222 23357888999999999877 6889999999 999999864 56777877 6
Q ss_pred CcceEEEEecCCC-CEEEEEcCCCcEEEEEccCCCCCCCCCccccCCCCCccCCCCCceeeeeEeeeecceEEeccccee
Q 018248 223 RAEIYSLAFSSNA-QWLAASSDKGTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSAISSFRFIRGVLPKYFSSKWSMA 301 (359)
Q Consensus 223 ~~~i~~~~~s~~~-~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (359)
...|+++.|+|.. ++|++++.|..|.+|...+-...+...........++. ......-.+ ....+.
T Consensus 258 sHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~---dseer~kpL----------~dg~l~ 324 (370)
T KOG1007|consen 258 SHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDE---DSEERVKPL----------QDGQLE 324 (370)
T ss_pred ceEEEEEEecCccceEEEecCCCceeEEEeccccccccccccccccccCcch---hhHHhcccc----------cccccc
Confidence 6699999999954 57889999999999988765433211111111111100 000000000 112233
Q ss_pred EEeecCCcEEEeeecc-cCCEEEEEecCCeEEEEEeCC
Q 018248 302 QFRLPENVQYLVGFGR-QNNTIVIVGLDGSYYKCEFDP 338 (359)
Q Consensus 302 ~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~v~~~~~ 338 (359)
++.-+++.|.+++||. |.-.+|+-+.||++.|=++++
T Consensus 325 tydehEDSVY~~aWSsadPWiFASLSYDGRviIs~V~r 362 (370)
T KOG1007|consen 325 TYDEHEDSVYALAWSSADPWIFASLSYDGRVIISSVPR 362 (370)
T ss_pred cccccccceEEEeeccCCCeeEEEeccCceEEeecCCh
Confidence 4555678999999987 555678888899999887765
No 158
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.87 E-value=3.9e-19 Score=150.44 Aligned_cols=286 Identities=12% Similarity=0.124 Sum_probs=198.9
Q ss_pred CCCCCceEEEEEccCCC---EEEEec-CCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeE
Q 018248 3 QPDPITIHHLALNQDHG---CFATGT-ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKV 78 (359)
Q Consensus 3 ~~h~~~v~~~~~s~~g~---~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i 78 (359)
..|..+|+|+.|-|+.+ ++++|+ |+.|.+|.++.........++ +|...+. ++.-........+ .|+.+
T Consensus 51 ~GH~a~VnC~~~l~~s~~~a~~vsG~sD~~v~lW~l~~~~~~~i~~~~-g~~~~~~--cv~a~~~~~~~~~----ad~~v 123 (764)
T KOG1063|consen 51 DGHVARVNCVHWLPTSEIVAEMVSGDSDGRVILWKLRDEYLIKIYTIQ-GHCKECV--CVVARSSVMTCKA----ADGTV 123 (764)
T ss_pred cCCccceEEEEEcccccccceEEEccCCCcEEEEEEeehheEEEEeec-CcceeEE--EEEeeeeEEEeec----cCceE
Confidence 36899999999999888 788998 999999999965566666775 4554444 4433222222222 68999
Q ss_pred EEEECCCcc--EEeeecc---CcceeEEEEecc-eeEEE----ecCeEEEEEcc--cceeeeeEeccCCCceeeeeecCC
Q 018248 79 MIWDDHENR--YLGELSF---RSEVKNVRLRRD-RIVVV----LNQKVYVYNFT--DLKLVDQIETVVNPTGLCDVSQNA 146 (359)
Q Consensus 79 ~iwd~~~~~--~~~~~~~---~~~v~~~~~~~~-~~~~~----~d~~i~i~d~~--~~~~~~~~~~~~~~~~~~~~~~~~ 146 (359)
.+||.+..+ +...+.. .--..|+++.|+ +.++. .+..|.++.-. .-+.+..+.+|...+..++|+..+
T Consensus 124 ~vw~~~~~e~~~~~~~rf~~k~~ipLcL~~~~~~~~~lla~Ggs~~~v~~~s~~~d~f~~v~el~GH~DWIrsl~f~~~~ 203 (764)
T KOG1063|consen 124 SVWDKQQDEVFLLAVLRFEIKEAIPLCLAALKNNKTFLLACGGSKFVVDLYSSSADSFARVAELEGHTDWIRSLAFARLG 203 (764)
T ss_pred EEeecCCCceeeehheehhhhhHhhHHHhhhccCCcEEEEecCcceEEEEeccCCcceeEEEEeeccchhhhhhhhhccC
Confidence 999985555 3333331 122345666663 44443 44455555433 225677889999999999998876
Q ss_pred C-ccEEEecCCCCeeEEEEecCCe----------------------ee---E-------EeecccccccEEEEccCCcEE
Q 018248 147 G-PMVMACPGLLKGQVRVEDYGTK----------------------KS---K-------YITAHASRIASIAMTLDGRFV 193 (359)
Q Consensus 147 ~-~~~l~~~g~~d~~v~~~~~~~~----------------------~~---~-------~~~~~~~~i~~~~~s~~~~~l 193 (359)
. ..++|+ ++.|..|+||..... .. . .+.+|...|.++.|+|.+..|
T Consensus 204 ~~~~~laS-~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeDWV~sv~W~p~~~~L 282 (764)
T KOG1063|consen 204 GDDLLLAS-SSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHEDWVYSVWWHPEGLDL 282 (764)
T ss_pred CCcEEEEe-cCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcCcccceEEEEEccchhhh
Confidence 6 555555 889999999865311 01 1 124899999999999999999
Q ss_pred EEEeCCCCeEEEEEcCCC--cEEEEeecC---CCCcceEEEEecCCCCEEEEEcCCCcEEEEEccCCCCCCCCCccccCC
Q 018248 194 ATASSKGTLIRVFNTMDG--SLLQEMRRG---AERAEIYSLAFSSNAQWLAASSDKGTVHVFGLKVDSGSPGTSKLHSAS 268 (359)
Q Consensus 194 ~~~~~dg~~i~iwd~~~~--~~~~~~~~~---~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~ 268 (359)
++++.|.+ +.+|...+. --+...+.+ ...+......|+|++..+++-+..|..++|..+....
T Consensus 283 LSASaDks-miiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt~d~~~----------- 350 (764)
T KOG1063|consen 283 LSASADKS-MIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHLWKTKDKTF----------- 350 (764)
T ss_pred eecccCcc-eEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcEEEEeccCccc-----------
Confidence 99999999 999976543 222222221 1335688999999999999999999999999333221
Q ss_pred CCCccCCCCCceeeeeEeeeecceEEecccceeEEeecCCcEEEeeecccCCEEEEEecCCeEEEEEe
Q 018248 269 EPNLSSKNSSAISSFRFIRGVLPKYFSSKWSMAQFRLPENVQYLVGFGRQNNTIVIVGLDGSYYKCEF 336 (359)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~ 336 (359)
|.++. .+..|.+.|..++|+|.|.+|++++.|-+-|+|.-
T Consensus 351 --------------------w~~~~--------~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~ 390 (764)
T KOG1063|consen 351 --------------------WTQEP--------VISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFAR 390 (764)
T ss_pred --------------------eeecc--------ccccccccceeeeecCCCCEEEEeccccceeeecc
Confidence 11110 13345678899999999999999999999999844
No 159
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.86 E-value=1.7e-20 Score=140.89 Aligned_cols=277 Identities=9% Similarity=0.116 Sum_probs=183.2
Q ss_pred CCCCceEEEEEccCCCEEEEec-CCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEE
Q 018248 4 PDPITIHHLALNQDHGCFATGT-ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWD 82 (359)
Q Consensus 4 ~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd 82 (359)
+|.+.|+++.|-.+++ |.+|. .|.+.+|++.+........+ .|...+..+...++ +.+..-+ .|..+.+|+
T Consensus 12 p~~~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~r~~~~~r~--~g~~~it~lq~~p~-d~l~tqg----Rd~~L~lw~ 83 (323)
T KOG0322|consen 12 PHSSSVTSVLFQANER-LMSGLSVGIVKMWVLQTERDLPLIRL--FGRLFITNLQSIPN-DSLDTQG----RDPLLILWT 83 (323)
T ss_pred cccchheehhhccchh-hhcccccceEEEEEeecCccchhhhh--hccceeeceeecCC-cchhhcC----CCceEEEEE
Confidence 7889999999998887 66777 89999999998766644443 35666666666655 3333334 689999999
Q ss_pred CCCccEEeeeccCcceeEEEEec-----ce----eEEE-ec---CeEEEEEcccceeeeeEe----ccCCCceeeeeecC
Q 018248 83 DHENRYLGELSFRSEVKNVRLRR-----DR----IVVV-LN---QKVYVYNFTDLKLVDQIE----TVVNPTGLCDVSQN 145 (359)
Q Consensus 83 ~~~~~~~~~~~~~~~v~~~~~~~-----~~----~~~~-~d---~~i~i~d~~~~~~~~~~~----~~~~~~~~~~~~~~ 145 (359)
+.-+..+..- .-.++++.|.+ +. +.+. .+ ..+.+-|......+.... ...+.+.+..+...
T Consensus 84 ia~s~~i~i~--Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~ 161 (323)
T KOG0322|consen 84 IAYSAFISIH--SIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHA 161 (323)
T ss_pred ccCcceEEEe--eeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeecccc
Confidence 8775544332 22233333332 22 1222 11 112223321111111111 11223333333333
Q ss_pred -CCccEEEecCCCCeeEEEEecCCe-----------eeEEeecccccccEEEEccCCcEEEEEeCCCCeEEEEEcCC--C
Q 018248 146 -AGPMVMACPGLLKGQVRVEDYGTK-----------KSKYITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMD--G 211 (359)
Q Consensus 146 -~~~~~l~~~g~~d~~v~~~~~~~~-----------~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~--~ 211 (359)
+...+++ +|.++|.+.+|+...+ .......|..+|.++.+.+.-..=++|+.+.. +..|.+.. +
T Consensus 162 c~s~~lll-aGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dk-l~~~Sl~~s~g 239 (323)
T KOG0322|consen 162 CGSTFLLL-AGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDK-LVMYSLNHSTG 239 (323)
T ss_pred ccceEEEE-EeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCcccc-ceeeeeccccC
Confidence 3344444 4999999999998863 33344578999999999876655667777777 88888753 2
Q ss_pred cE--EEEeecCCCCcceEEEEecCCCCEEEEEcCCCcEEEEEccCCCCCCCCCccccCCCCCccCCCCCceeeeeEeeee
Q 018248 212 SL--LQEMRRGAERAEIYSLAFSSNAQWLAASSDKGTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSAISSFRFIRGV 289 (359)
Q Consensus 212 ~~--~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (359)
.+ ..+... ....|..+.+-||++.+|+++.|+.||||..++..+..
T Consensus 240 slq~~~e~~l--knpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLA------------------------------ 287 (323)
T KOG0322|consen 240 SLQIRKEITL--KNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLA------------------------------ 287 (323)
T ss_pred cccccceEEe--cCCCccceEEccCCcEEeecccCCcEEEEEeccCCchh------------------------------
Confidence 22 112221 23478899999999999999999999999999987542
Q ss_pred cceEEecccceeEEeecCCcEEEeeecccCCEEEEEecCCeEEEEEe
Q 018248 290 LPKYFSSKWSMAQFRLPENVQYLVGFGRQNNTIVIVGLDGSYYKCEF 336 (359)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~ 336 (359)
.++.|.+.|++++|+||...+|+++.|++|-+|++
T Consensus 288 ------------VLkyHsagvn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 288 ------------VLKYHSAGVNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred ------------hhhhhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence 24556678999999999999999999999999986
No 160
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.86 E-value=5.5e-18 Score=142.96 Aligned_cols=268 Identities=10% Similarity=0.111 Sum_probs=175.1
Q ss_pred CCceEEEEcCC-CcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEECC-CccE--EeeeccCcceeEE
Q 018248 26 ETGFRVYLSDP-YKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDDH-ENRY--LGELSFRSEVKNV 101 (359)
Q Consensus 26 d~~i~iw~~~~-~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~~-~~~~--~~~~~~~~~v~~~ 101 (359)
++.|++|++.+ ++......+. +.+....+.++++++.+++++. .++.|.+|++. +++. +...........+
T Consensus 11 ~~~I~~~~~~~~g~l~~~~~~~--~~~~~~~l~~spd~~~lyv~~~---~~~~i~~~~~~~~g~l~~~~~~~~~~~p~~i 85 (330)
T PRK11028 11 SQQIHVWNLNHEGALTLLQVVD--VPGQVQPMVISPDKRHLYVGVR---PEFRVLSYRIADDGALTFAAESPLPGSPTHI 85 (330)
T ss_pred CCCEEEEEECCCCceeeeeEEe--cCCCCccEEECCCCCEEEEEEC---CCCcEEEEEECCCCceEEeeeecCCCCceEE
Confidence 89999999964 3333434442 3455677888998888776654 36899999986 3332 2333344567789
Q ss_pred EEecceeEEE----ecCeEEEEEccc-ce---eeeeEeccCCCceeeeeecCCCccEEEecCCCCeeEEEEecCC-eeeE
Q 018248 102 RLRRDRIVVV----LNQKVYVYNFTD-LK---LVDQIETVVNPTGLCDVSQNAGPMVMACPGLLKGQVRVEDYGT-KKSK 172 (359)
Q Consensus 102 ~~~~~~~~~~----~d~~i~i~d~~~-~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~v~~~~~~~-~~~~ 172 (359)
.++|++++++ .++.|.+|++.+ +. .+..+... .....++++|+++..+++ ...++.|.+|+.+. ..+.
T Consensus 86 ~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~-~~~~~~~~~p~g~~l~v~--~~~~~~v~v~d~~~~g~l~ 162 (330)
T PRK11028 86 STDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEGL-EGCHSANIDPDNRTLWVP--CLKEDRIRLFTLSDDGHLV 162 (330)
T ss_pred EECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccCC-CcccEeEeCCCCCEEEEe--eCCCCEEEEEEECCCCccc
Confidence 9999998776 589999999953 32 22222222 234557788988764433 55678999987754 2221
Q ss_pred E-----ee-cccccccEEEEccCCcEEEEEeC-CCCeEEEEEcCC--Cc--EEEEeecC----CCCcceEEEEecCCCCE
Q 018248 173 Y-----IT-AHASRIASIAMTLDGRFVATASS-KGTLIRVFNTMD--GS--LLQEMRRG----AERAEIYSLAFSSNAQW 237 (359)
Q Consensus 173 ~-----~~-~~~~~i~~~~~s~~~~~l~~~~~-dg~~i~iwd~~~--~~--~~~~~~~~----~~~~~i~~~~~s~~~~~ 237 (359)
. .. ........++|+|+|+++++++. ++. |.+|++.. ++ .+..+... .+......+.++|++++
T Consensus 163 ~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~-v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~ 241 (330)
T PRK11028 163 AQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSS-VDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRH 241 (330)
T ss_pred ccCCCceecCCCCCCceEEECCCCCEEEEEecCCCE-EEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCE
Confidence 0 11 11334678999999999988876 777 99999973 32 23333211 01123346899999999
Q ss_pred EEEEcC-CCcEEEEEccCCCCCCCCCccccCCCCCccCCCCCceeeeeEeeeecceEEecccceeEEeecCCcEEEeeec
Q 018248 238 LAASSD-KGTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSAISSFRFIRGVLPKYFSSKWSMAQFRLPENVQYLVGFG 316 (359)
Q Consensus 238 l~~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 316 (359)
|+++.. ++.|.+|+++..... +.++.. ... ......++|+
T Consensus 242 lyv~~~~~~~I~v~~i~~~~~~------------------------~~~~~~--------------~~~-~~~p~~~~~~ 282 (330)
T PRK11028 242 LYACDRTASLISVFSVSEDGSV------------------------LSFEGH--------------QPT-ETQPRGFNID 282 (330)
T ss_pred EEEecCCCCeEEEEEEeCCCCe------------------------EEEeEE--------------Eec-cccCCceEEC
Confidence 988854 688999999764311 111110 000 0123468999
Q ss_pred ccCCEEEEEec-CCeEEEEEeCCCCC
Q 018248 317 RQNNTIVIVGL-DGSYYKCEFDPMKG 341 (359)
Q Consensus 317 ~~~~~l~~~~~-dg~i~v~~~~~~~~ 341 (359)
|||++|+++.. +++|.+|+++.+++
T Consensus 283 ~dg~~l~va~~~~~~v~v~~~~~~~g 308 (330)
T PRK11028 283 HSGKYLIAAGQKSHHISVYEIDGETG 308 (330)
T ss_pred CCCCEEEEEEccCCcEEEEEEcCCCC
Confidence 99999998887 89999999986553
No 161
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.86 E-value=3.2e-19 Score=137.53 Aligned_cols=246 Identities=12% Similarity=0.104 Sum_probs=177.4
Q ss_pred eeEEEEeccCCEEEEEecCCCCCCeEEEEECCCccEEeeec-cCcceeEEEEecceeEEE---ecCeEEEEEcccceeee
Q 018248 53 TQLVSMLFRSNIICLVNSGPHQSNKVMIWDDHENRYLGELS-FRSEVKNVRLRRDRIVVV---LNQKVYVYNFTDLKLVD 128 (359)
Q Consensus 53 v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~ 128 (359)
..++.|+..+.++++.. .||.|.|||+.+...-+.+. |-.+|.+++|+++|+.++ .|..|.+||+..|.+++
T Consensus 26 a~~~~Fs~~G~~lAvGc----~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~ 101 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGC----ANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLK 101 (405)
T ss_pred cceEEeccCcceeeeec----cCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCcee
Confidence 66778888888888877 78999999999998878887 999999999999999888 89999999999999988
Q ss_pred eEeccCCCceeeeeecCCCccEEEecCCCCeeEEEEecCCeeeEEeec-c----cccccEEEEccCCcEEEEEeCCCCeE
Q 018248 129 QIETVVNPTGLCDVSQNAGPMVMACPGLLKGQVRVEDYGTKKSKYITA-H----ASRIASIAMTLDGRFVATASSKGTLI 203 (359)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~v~~~~~~~~~~~~~~~-~----~~~i~~~~~s~~~~~l~~~~~dg~~i 203 (359)
.+.- ..++..+.|+|...+..+++.- +..-.+-......-..+.. . .....+..|.+.|+++++|...|. +
T Consensus 102 rirf-~spv~~~q~hp~k~n~~va~~~--~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGk-l 177 (405)
T KOG1273|consen 102 RIRF-DSPVWGAQWHPRKRNKCVATIM--EESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGK-L 177 (405)
T ss_pred EEEc-cCccceeeeccccCCeEEEEEe--cCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecCcce-E
Confidence 8864 5788999999998887777632 2222221121111111111 1 112233468899999999999999 9
Q ss_pred EEEEcCCCcEEEEeecCCCCcceEEEEecCCCCEEEEEcCCCcEEEEEccCCCCCCCCCccccCCCCCccCCCCCceeee
Q 018248 204 RVFNTMDGSLLQEMRRGAERAEIYSLAFSSNAQWLAASSDKGTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSAISSF 283 (359)
Q Consensus 204 ~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (359)
.++|..+.+++..++.. ....|.++.++..|+.|+.-+.|..||.|+++.--... .....
T Consensus 178 lv~~a~t~e~vas~rit-s~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~-------------------r~~e~ 237 (405)
T KOG1273|consen 178 LVYDAETLECVASFRIT-SVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEG-------------------RDGEV 237 (405)
T ss_pred EEEecchheeeeeeeec-hheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccC-------------------ccCCc
Confidence 99999999999888763 23688999999999999999999999999987422100 00000
Q ss_pred eEeeeecceEEecccceeEEeecCCcEEEeeecccCCEEEEEec-CCeEEEEEeCC
Q 018248 284 RFIRGVLPKYFSSKWSMAQFRLPENVQYLVGFGRQNNTIVIVGL-DGSYYKCEFDP 338 (359)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-dg~i~v~~~~~ 338 (359)
.... ++.+-. ..-.-..+.|+.||.++++++. ...+|||.-..
T Consensus 238 e~~~----K~qDvV--------Nk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~ 281 (405)
T KOG1273|consen 238 EPEH----KLQDVV--------NKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSI 281 (405)
T ss_pred ChhH----HHHHHH--------hhhhhhheeecCCccEEEeccccceeEEEEecCC
Confidence 0000 000000 0011246899999999998887 66799997554
No 162
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.86 E-value=4.5e-21 Score=170.69 Aligned_cols=244 Identities=13% Similarity=0.171 Sum_probs=189.5
Q ss_pred CCceEEEEEccCCCE----EEEec-CCceEEEEcCCC----cceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCC
Q 018248 6 PITIHHLALNQDHGC----FATGT-ETGFRVYLSDPY----KPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSN 76 (359)
Q Consensus 6 ~~~v~~~~~s~~g~~----l~~~~-d~~i~iw~~~~~----~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~ 76 (359)
..+-+.++|.+.|.. ||.|. ||.|.+|+.... +........ .|.+.|..+.|.+....++ ++|+ .||
T Consensus 64 ~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~-~h~G~V~gLDfN~~q~nlL-ASGa--~~g 139 (1049)
T KOG0307|consen 64 SNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKS-KHTGPVLGLDFNPFQGNLL-ASGA--DDG 139 (1049)
T ss_pred cccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhc-ccCCceeeeeccccCCcee-eccC--CCC
Confidence 456789999998877 66666 999999998752 122222333 7999999999887655333 2333 689
Q ss_pred eEEEEECCCccEEeeec---cCcceeEEEEecceeEEE----ecCeEEEEEcccceeeeeEeccCC--CceeeeeecCCC
Q 018248 77 KVMIWDDHENRYLGELS---FRSEVKNVRLRRDRIVVV----LNQKVYVYNFTDLKLVDQIETVVN--PTGLCDVSQNAG 147 (359)
Q Consensus 77 ~i~iwd~~~~~~~~~~~---~~~~v~~~~~~~~~~~~~----~d~~i~i~d~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 147 (359)
.|.|||+..-+.-..+. ..+.|.+++|+..-..++ .+|.+.|||++..+.+..+..+.. .+..++|+|+..
T Consensus 140 eI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~a 219 (1049)
T KOG0307|consen 140 EILIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHA 219 (1049)
T ss_pred cEEEeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCc
Confidence 99999998755444442 568899999998765554 778999999988877777765443 356889999988
Q ss_pred ccEEEecCCC-CeeEEEEecCC--eeeEEeecccccccEEEEccCC-cEEEEEeCCCCeEEEEEcCCCcEEEEeecCCCC
Q 018248 148 PMVMACPGLL-KGQVRVEDYGT--KKSKYITAHASRIASIAMTLDG-RFVATASSKGTLIRVFNTMDGSLLQEMRRGAER 223 (359)
Q Consensus 148 ~~~l~~~g~~-d~~v~~~~~~~--~~~~~~~~~~~~i~~~~~s~~~-~~l~~~~~dg~~i~iwd~~~~~~~~~~~~~~~~ 223 (359)
..++++++.. .-.|.+|+.+. .+++.+++|...|.++.|++.+ ++|++++.|+. |.+|+.++++.+.++.. ..
T Consensus 220 Tql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~-ii~wN~~tgEvl~~~p~--~~ 296 (1049)
T KOG0307|consen 220 TQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNR-IICWNPNTGEVLGELPA--QG 296 (1049)
T ss_pred eeeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCCCC-eeEecCCCceEeeecCC--CC
Confidence 7766664432 23455599764 6778889999999999999966 79999999999 99999999999999987 55
Q ss_pred cceEEEEecCCCC-EEEEEcCCCcEEEEEccCCC
Q 018248 224 AEIYSLAFSSNAQ-WLAASSDKGTVHVFGLKVDS 256 (359)
Q Consensus 224 ~~i~~~~~s~~~~-~l~~~~~dg~i~iw~~~~~~ 256 (359)
..+..+.|.|... .+++++.||.|.|+.+....
T Consensus 297 nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 297 NWCFDVQWCPRNPSVMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred cceeeeeecCCCcchhhhheeccceeeeeeecCC
Confidence 7999999999665 88889999999999998766
No 163
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.86 E-value=5.6e-20 Score=154.06 Aligned_cols=248 Identities=10% Similarity=0.120 Sum_probs=168.0
Q ss_pred CCCCCceEEEEEccCCCEEEEec-CCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEE
Q 018248 3 QPDPITIHHLALNQDHGCFATGT-ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIW 81 (359)
Q Consensus 3 ~~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iw 81 (359)
+.|.+.|..+.|-|....|++++ |.++++||++..+..-...+. ||.+.+..+++.+....++.. |+ .||.|.||
T Consensus 97 ~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~-GH~~SvkS~cf~~~n~~vF~t-Gg--RDg~illW 172 (720)
T KOG0321|consen 97 LAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNL-GHTGSVKSECFMPTNPAVFCT-GG--RDGEILLW 172 (720)
T ss_pred ccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecceeec-ccccccchhhhccCCCcceee-cc--CCCcEEEE
Confidence 46999999999999667788888 999999999987665544344 999999999999876655444 44 68999999
Q ss_pred ECCCcc--------------------EEe-------eec-cCcceeE---EEEecceeEEE----ecCeEEEEEccccee
Q 018248 82 DDHENR--------------------YLG-------ELS-FRSEVKN---VRLRRDRIVVV----LNQKVYVYNFTDLKL 126 (359)
Q Consensus 82 d~~~~~--------------------~~~-------~~~-~~~~v~~---~~~~~~~~~~~----~d~~i~i~d~~~~~~ 126 (359)
|+.-.. ... .-. +...|.+ +.+..|...++ .|+.|++||++....
T Consensus 173 D~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~ 252 (720)
T KOG0321|consen 173 DCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYT 252 (720)
T ss_pred EEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeeccccc
Confidence 975321 000 001 2233444 44455655555 699999999976543
Q ss_pred eeeEe------ccCC---CceeeeeecCCCccEEEecCCCCeeEEEEecCCeeeE---Eeeccccc--ccEEEEccCCcE
Q 018248 127 VDQIE------TVVN---PTGLCDVSQNAGPMVMACPGLLKGQVRVEDYGTKKSK---YITAHASR--IASIAMTLDGRF 192 (359)
Q Consensus 127 ~~~~~------~~~~---~~~~~~~~~~~~~~~l~~~g~~d~~v~~~~~~~~~~~---~~~~~~~~--i~~~~~s~~~~~ 192 (359)
....+ .+.. .+..+.+.-|..+.+|.+++ .|+.|++|+.....+. .+.++... -..-..+|++.+
T Consensus 253 ~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsC-tD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~ 331 (720)
T KOG0321|consen 253 AYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASC-TDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCS 331 (720)
T ss_pred ccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEe-cCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCce
Confidence 32221 1111 23445555555444455534 5999999988764333 33333211 112246899999
Q ss_pred EEEEeCCCCeEEEEEcCCCcEEEEeecCCCCcceEEEEecCCC-CEEEEEcCCCcEEEEEccCCCC
Q 018248 193 VATASSKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSNA-QWLAASSDKGTVHVFGLKVDSG 257 (359)
Q Consensus 193 l~~~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~-~~l~~~~~dg~i~iw~~~~~~~ 257 (359)
|++|+.|.. .++|.+.+.+.-..+..+ |.-.|++++|.|.. .-++++++|..++||++..+..
T Consensus 332 l~SgSsd~~-ayiw~vs~~e~~~~~l~G-ht~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~l~ 395 (720)
T KOG0321|consen 332 LLSGSSDEQ-AYIWVVSSPEAPPALLLG-HTREVTTVRWLPSATTPVATCSDDFRVKIWRLSNGLE 395 (720)
T ss_pred EeccCCCcc-eeeeeecCccCChhhhhC-cceEEEEEeeccccCCCceeeccCcceEEEeccCchh
Confidence 999999999 999999887654444333 77899999998743 3466779999999999976543
No 164
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.85 E-value=4.7e-19 Score=142.46 Aligned_cols=277 Identities=14% Similarity=0.122 Sum_probs=186.7
Q ss_pred EEEEccCCCEEEEec--CC--c--eEEEEcCCCcceeeeecccCCCCceeEEEEecc-------CCEEEEEecCCCCCCe
Q 018248 11 HLALNQDHGCFATGT--ET--G--FRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFR-------SNIICLVNSGPHQSNK 77 (359)
Q Consensus 11 ~~~~s~~g~~l~~~~--d~--~--i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-------~~~~~~~~~~~~~d~~ 77 (359)
.+..-|+..+++++. +. . ++||+-..........+- -.....|++|.-. +|++++.+ .|..
T Consensus 130 e~~V~psDnlIl~ar~eddvs~LEvYVyn~~e~nlYvHHD~i--lpafPLC~ewld~~~~~~~~gNyvAiGt----mdp~ 203 (463)
T KOG0270|consen 130 EEQVKPSDNLILCARNEDDVSYLEVYVYNEEEENLYVHHDFI--LPAFPLCIEWLDHGSKSGGAGNYVAIGT----MDPE 203 (463)
T ss_pred cceeccCCcEEEEeeccCCceEEEEEEEcCCCcceeEeccee--ccCcchhhhhhhcCCCCCCCcceEEEec----cCce
Confidence 455667777888876 32 2 444543321111111110 0112233444322 46777777 7899
Q ss_pred EEEEECCCcc---EE----------------eee---ccCcceeEEEEecceeEE-E---ecCeEEEEEcccceeeeeEe
Q 018248 78 VMIWDDHENR---YL----------------GEL---SFRSEVKNVRLRRDRIVV-V---LNQKVYVYNFTDLKLVDQIE 131 (359)
Q Consensus 78 i~iwd~~~~~---~~----------------~~~---~~~~~v~~~~~~~~~~~~-~---~d~~i~i~d~~~~~~~~~~~ 131 (359)
|.|||+.-.. +. +.. .|...|..+.|+..-..+ + .|.+|++||+.++++...+.
T Consensus 204 IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~~ 283 (463)
T KOG0270|consen 204 IEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTGKPKSSIT 283 (463)
T ss_pred eEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEEEEcCCCCcceehh
Confidence 9999964210 00 001 166778888888875444 4 89999999999999999999
Q ss_pred ccCCCceeeeeecCCCccEEEecCCCCeeEEEEecC-CeeeEEeecccccccEEEEccCCc-EEEEEeCCCCeEEEEEcC
Q 018248 132 TVVNPTGLCDVSQNAGPMVMACPGLLKGQVRVEDYG-TKKSKYITAHASRIASIAMTLDGR-FVATASSKGTLIRVFNTM 209 (359)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~l~~~g~~d~~v~~~~~~-~~~~~~~~~~~~~i~~~~~s~~~~-~l~~~~~dg~~i~iwd~~ 209 (359)
.|...|..+.|.|.... +|++ |+.|++|.+.+.+ .......-.-.+.|..++|.|... .++++..||. |+-+|+|
T Consensus 284 ~~~k~Vq~l~wh~~~p~-~LLs-Gs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~w~~~se~~f~~~tddG~-v~~~D~R 360 (463)
T KOG0270|consen 284 HHGKKVQTLEWHPYEPS-VLLS-GSYDGTVALKDCRDPSNSGKEWKFDGEVEKVAWDPHSENSFFVSTDDGT-VYYFDIR 360 (463)
T ss_pred hcCCceeEEEecCCCce-EEEe-ccccceEEeeeccCccccCceEEeccceEEEEecCCCceeEEEecCCce-EEeeecC
Confidence 99999999999998775 3444 8899999995544 222222222457899999999765 5667788999 9999999
Q ss_pred CC-cEEEEeecCCCCcceEEEEecCCC-CEEEEEcCCCcEEEEEccCCCCCCCCCccccCCCCCccCCCCCceeeeeEee
Q 018248 210 DG-SLLQEMRRGAERAEIYSLAFSSNA-QWLAASSDKGTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSAISSFRFIR 287 (359)
Q Consensus 210 ~~-~~~~~~~~~~~~~~i~~~~~s~~~-~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (359)
+. +++.+++. |.++|.++++++.- .+|++++.|+.|++|++....+..
T Consensus 361 ~~~~~vwt~~A--Hd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~---------------------------- 410 (463)
T KOG0270|consen 361 NPGKPVWTLKA--HDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKS---------------------------- 410 (463)
T ss_pred CCCCceeEEEe--ccCCcceEEecCCCCcceeeccccceEEEEeecCCCCcc----------------------------
Confidence 75 88888887 88899999998754 478999999999999998765321
Q ss_pred eecceEEecccceeEEeecCCcEEEeeecccC-CEEEEEecCCeEEEEEeCC
Q 018248 288 GVLPKYFSSKWSMAQFRLPENVQYLVGFGRQN-NTIVIVGLDGSYYKCEFDP 338 (359)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~v~~~~~ 338 (359)
...+.+. -+...+.++.|+- -.|+.|+..+.++||++-.
T Consensus 411 -v~~~~~~-----------~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~ 450 (463)
T KOG0270|consen 411 -VKEHSFK-----------LGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFT 450 (463)
T ss_pred -ccccccc-----------ccceeecccCCCcceEEEecCccceEEEeeccc
Confidence 0000010 0123456666654 5678888888999999865
No 165
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.85 E-value=2e-19 Score=139.99 Aligned_cols=277 Identities=14% Similarity=0.140 Sum_probs=186.6
Q ss_pred CEEEEec-CCceEEEEcCCCcceeeeecccCCCCceeEEEEec--cCCEEEEEecCCCCCCeEEEEECCCccEEeeec--
Q 018248 19 GCFATGT-ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLF--RSNIICLVNSGPHQSNKVMIWDDHENRYLGELS-- 93 (359)
Q Consensus 19 ~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~--~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~-- 93 (359)
..+|++. .|.|++||..+++... .+. +|...+..+.|.- .+..+..++ .||+|++||++.......+.
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~--~fk-~~~~~~N~vrf~~~ds~h~v~s~s----sDG~Vr~wD~Rs~~e~a~~~~~ 113 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLE--EFK-GPPATTNGVRFISCDSPHGVISCS----SDGTVRLWDIRSQAESARISWT 113 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhh--eec-CCCCcccceEEecCCCCCeeEEec----cCCeEEEEEeecchhhhheecc
Confidence 3466666 9999999999876663 444 6677777777765 455565555 68999999998876655554
Q ss_pred -cC-cceeEEEEecceeEEE-------ecCeEEEEEccccee-eeeE-eccCCCceeeeeecCCCccEEEecCCCCeeEE
Q 018248 94 -FR-SEVKNVRLRRDRIVVV-------LNQKVYVYNFTDLKL-VDQI-ETVVNPTGLCDVSQNAGPMVMACPGLLKGQVR 162 (359)
Q Consensus 94 -~~-~~v~~~~~~~~~~~~~-------~d~~i~i~d~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~v~ 162 (359)
++ .+..+++.+-.+.+++ .+-.|.+||++..+. +..+ +.|...|+.+.|+|....+ |+ +|+.||.|.
T Consensus 114 ~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnl-Ll-SGSvDGLvn 191 (376)
T KOG1188|consen 114 QQSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNL-LL-SGSVDGLVN 191 (376)
T ss_pred CCCCCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCe-EE-eecccceEE
Confidence 33 4566777765666665 677899999987665 4444 6789999999999988763 34 488999999
Q ss_pred EEecCCee----eEEeecccccccEEEEccCC-cEEEEEeCCCCeEEEEEcCCCcEEEEeecCCCC----------cceE
Q 018248 163 VEDYGTKK----SKYITAHASRIASIAMTLDG-RFVATASSKGTLIRVFNTMDGSLLQEMRRGAER----------AEIY 227 (359)
Q Consensus 163 ~~~~~~~~----~~~~~~~~~~i~~~~~s~~~-~~l~~~~~dg~~i~iwd~~~~~~~~~~~~~~~~----------~~i~ 227 (359)
+++..... +...-.|...|.++.|..++ +.|.+-+..++ ..+|+++.+.....+....-. ..+.
T Consensus 192 lfD~~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Et-f~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I 270 (376)
T KOG1188|consen 192 LFDTKKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMET-FAIYELEDGSEETWLENPDVSADDLRKEDNCDYVI 270 (376)
T ss_pred eeecCCCcchhhHHHhhcccceeeeeeeecCCcceEEEEEccCc-eeEEEccCCChhhcccCccchhhhHHhhhhhhhee
Confidence 98776532 23334567789999999877 35778888888 999999988765555432100 1111
Q ss_pred EEEecCCCCEEEEEcC-CCcEEEEEccCCCCCCCCCccccCCCCCccCCCCCceeeeeEeeeecceEEecccceeEEee-
Q 018248 228 SLAFSSNAQWLAASSD-KGTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSAISSFRFIRGVLPKYFSSKWSMAQFRL- 305 (359)
Q Consensus 228 ~~~~s~~~~~l~~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 305 (359)
......+...++.++. -+...++-+....... .....+.++.
T Consensus 271 ~~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~------------------------------------~~~~~a~l~g~ 314 (376)
T KOG1188|consen 271 NEHSPGDKDTCALAGTDSNKGTIFPLVDTSSGS------------------------------------LLTEPAILQGG 314 (376)
T ss_pred ecccCCCcceEEEeccccCceeEEEeeeccccc------------------------------------ccCccccccCC
Confidence 1111224445555444 5666666665422110 0001111222
Q ss_pred cCCcEEEeeecccCCEEEEEecCCeEEEEEeCCCCC
Q 018248 306 PENVQYLVGFGRQNNTIVIVGLDGSYYKCEFDPMKG 341 (359)
Q Consensus 306 ~~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~ 341 (359)
+...|+++.|...+..+++||+||.+.+|..+...+
T Consensus 315 ~~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk~~da~e 350 (376)
T KOG1188|consen 315 HEEIVRDILFDVKNDVLYTGGEDGLLQAWKVEDATE 350 (376)
T ss_pred cHHHHHHHhhhcccceeeccCCCceEEEEecCCccc
Confidence 345678888888889999999999999999755443
No 166
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.84 E-value=5.6e-18 Score=134.87 Aligned_cols=286 Identities=12% Similarity=0.160 Sum_probs=193.4
Q ss_pred CCCceEEEEEccCCC-EEEEec-CCceEEEEcCCCc-------ceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCC
Q 018248 5 DPITIHHLALNQDHG-CFATGT-ETGFRVYLSDPYK-------PIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQS 75 (359)
Q Consensus 5 h~~~v~~~~~s~~g~-~l~~~~-d~~i~iw~~~~~~-------~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d 75 (359)
...+|.++.|.++.. .+|+|+ |..|+||.++... ..+...+. .|...|+++.|+++++.++.++ .+
T Consensus 12 ~~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls-~H~~aVN~vRf~p~gelLASg~----D~ 86 (434)
T KOG1009|consen 12 DHEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLS-RHTRAVNVVRFSPDGELLASGG----DG 86 (434)
T ss_pred CCCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeeccc-CCcceeEEEEEcCCcCeeeecC----CC
Confidence 357899999999877 999999 9999999986322 23334454 8999999999999998888776 67
Q ss_pred CeEEEEECC--------C-----c---cEEeeec-cCcceeEEEEecceeEEE---ecCeEEEEEcccceeeeeEeccCC
Q 018248 76 NKVMIWDDH--------E-----N---RYLGELS-FRSEVKNVRLRRDRIVVV---LNQKVYVYNFTDLKLVDQIETVVN 135 (359)
Q Consensus 76 ~~i~iwd~~--------~-----~---~~~~~~~-~~~~v~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~~~~~ 135 (359)
|.|.+|... + . .....+. |...|..++|+|+++++. .|+.+++||+..|+....+..|.+
T Consensus 87 g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~ 166 (434)
T KOG1009|consen 87 GEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEH 166 (434)
T ss_pred ceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeecccccc
Confidence 999999755 2 1 1122233 889999999999999988 899999999999999999999999
Q ss_pred CceeeeeecCCCccEEEecCCCCeeEEEEecCC----ee------------------eEEeec--ccccccEEEEccCCc
Q 018248 136 PTGLCDVSQNAGPMVMACPGLLKGQVRVEDYGT----KK------------------SKYITA--HASRIASIAMTLDGR 191 (359)
Q Consensus 136 ~~~~~~~~~~~~~~~l~~~g~~d~~v~~~~~~~----~~------------------~~~~~~--~~~~i~~~~~s~~~~ 191 (359)
.+..++|.|.++. +++ -+.|...+...... .. .+.+.. -..-...++|+|+|.
T Consensus 167 yvqgvawDpl~qy--v~s-~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~ 243 (434)
T KOG1009|consen 167 YVQGVAWDPLNQY--VAS-KSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGS 243 (434)
T ss_pred ccceeecchhhhh--hhh-hccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCc
Confidence 9999999888765 444 22344333322211 11 111100 011245678999999
Q ss_pred EEEEEeC----CCC----eEEEEEcCC-CcEEEEeecCCCCcceEEEEecC------------------CCCEEEEEcCC
Q 018248 192 FVATASS----KGT----LIRVFNTMD-GSLLQEMRRGAERAEIYSLAFSS------------------NAQWLAASSDK 244 (359)
Q Consensus 192 ~l~~~~~----dg~----~i~iwd~~~-~~~~~~~~~~~~~~~i~~~~~s~------------------~~~~l~~~~~d 244 (359)
+|++.+. .+. ..++|+-.. .++...+.. ...+...+.|+| -+-.++.++.
T Consensus 244 llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~--~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt~- 320 (434)
T KOG1009|consen 244 LLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPS--PKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIATK- 320 (434)
T ss_pred EEEcccceeeeCCceeeceeEeeccccccCceeecCC--CCcceEEEEeeeeEEEeccccccccccccccceEEEEeec-
Confidence 9987642 222 034554322 122223322 223344444433 2234455554
Q ss_pred CcEEEEEccCCCCCCCCCccccCCCCCccCCCCCceeeeeEeeeecceEEecccceeEEeecCCcEEEeeecccCCEEEE
Q 018248 245 GTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSAISSFRFIRGVLPKYFSSKWSMAQFRLPENVQYLVGFGRQNNTIVI 324 (359)
Q Consensus 245 g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~ 324 (359)
..|+|||.++..+.. .+ -.+|-..++.++|++||..|+.
T Consensus 321 ~svyvydtq~~~P~~-------------------------~v----------------~nihy~~iTDiaws~dg~~l~v 359 (434)
T KOG1009|consen 321 NSVYVYDTQTLEPLA-------------------------VV----------------DNIHYSAITDIAWSDDGSVLLV 359 (434)
T ss_pred ceEEEeccccccceE-------------------------EE----------------eeeeeeeecceeecCCCcEEEE
Confidence 469999998866431 11 1233456789999999999999
Q ss_pred EecCCeEEEEEeCCCCCC
Q 018248 325 VGLDGSYYKCEFDPMKGG 342 (359)
Q Consensus 325 ~~~dg~i~v~~~~~~~~~ 342 (359)
.+.||..-.-.+++.+-|
T Consensus 360 SS~DGyCS~vtfe~~elg 377 (434)
T KOG1009|consen 360 SSTDGFCSLVTFEPWELG 377 (434)
T ss_pred eccCCceEEEEEcchhcc
Confidence 999999998888887666
No 167
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.83 E-value=5.9e-20 Score=163.68 Aligned_cols=282 Identities=11% Similarity=0.124 Sum_probs=190.2
Q ss_pred ceEEEEEccCCC-EEEEec-----------CCceEEEEcCCCcc----eeeeecccCCCCceeEEEEeccCCEE--EEEe
Q 018248 8 TIHHLALNQDHG-CFATGT-----------ETGFRVYLSDPYKP----IMRRDFDRNPRGGTQLVSMLFRSNII--CLVN 69 (359)
Q Consensus 8 ~v~~~~~s~~g~-~l~~~~-----------d~~i~iw~~~~~~~----~~~~~~~~~h~~~v~~~~~~~~~~~~--~~~~ 69 (359)
+--.++|+|++. ++|+|. +.++.||.++-... .....+. -......++|...++.. ++++
T Consensus 8 Rta~~awSp~~~~~laagt~aq~~D~sfst~~slEifeld~~~~~~dlk~~~s~~--s~~rF~kL~W~~~g~~~~GlIaG 85 (1049)
T KOG0307|consen 8 RTATFAWSPASPPLLAAGTAAQQFDASFSTSASLEIFELDFSDESSDLKPVGSLQ--SSNRFNKLAWGSYGSHSHGLIAG 85 (1049)
T ss_pred ccceEEecCCCchhhHHHhhhhccccccccccccceeeecccCcccccccccccc--ccccceeeeecccCCCccceeec
Confidence 344678999997 555543 34466666642211 1222221 13445566676655442 3344
Q ss_pred cCCCCCCeEEEEECCC---c---cEEeeec-cCcceeEEEEeccee-EEE---ecCeEEEEEcccceeeeeEec--cCCC
Q 018248 70 SGPHQSNKVMIWDDHE---N---RYLGELS-FRSEVKNVRLRRDRI-VVV---LNQKVYVYNFTDLKLVDQIET--VVNP 136 (359)
Q Consensus 70 ~~~~~d~~i~iwd~~~---~---~~~~~~~-~~~~v~~~~~~~~~~-~~~---~d~~i~i~d~~~~~~~~~~~~--~~~~ 136 (359)
+. .||.|.+||... + ..+.+.. |.+.|..+.|++... +++ .+|.|.|||+...+.-..... ....
T Consensus 86 G~--edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~e 163 (1049)
T KOG0307|consen 86 GL--EDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSE 163 (1049)
T ss_pred cc--cCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCccc
Confidence 43 799999999654 2 2344444 999999999999765 666 899999999976544333311 3445
Q ss_pred ceeeeeecCCCccEEEecCCCCeeEEEEecCCe-eeEEeeccc--ccccEEEEccCCc-EEEEEeCCCC--eEEEEEcCC
Q 018248 137 TGLCDVSQNAGPMVMACPGLLKGQVRVEDYGTK-KSKYITAHA--SRIASIAMTLDGR-FVATASSKGT--LIRVFNTMD 210 (359)
Q Consensus 137 ~~~~~~~~~~~~~~l~~~g~~d~~v~~~~~~~~-~~~~~~~~~--~~i~~~~~s~~~~-~l~~~~~dg~--~i~iwd~~~ 210 (359)
|.+++|+..-.. +|+ +++.+|.+.|||.+.+ ++..+..+. ..+..++|+|+.. .|++++.|.. .|.+||++.
T Consensus 164 I~~lsWNrkvqh-ILA-S~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~ 241 (1049)
T KOG0307|consen 164 IKCLSWNRKVSH-ILA-SGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRF 241 (1049)
T ss_pred ceEeccchhhhH-Hhh-ccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccc
Confidence 666666654443 344 4778999999998875 344444333 3477899999865 5666665542 289999886
Q ss_pred C-cEEEEeecCCCCcceEEEEecCCC-CEEEEEcCCCcEEEEEccCCCCCCCCCccccCCCCCccCCCCCceeeeeEeee
Q 018248 211 G-SLLQEMRRGAERAEIYSLAFSSNA-QWLAASSDKGTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSAISSFRFIRG 288 (359)
Q Consensus 211 ~-~~~~~~~~~~~~~~i~~~~~s~~~-~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (359)
- .++++++. |...|.++.|++.+ ++|++++.|+.|.+|+.++++...
T Consensus 242 assP~k~~~~--H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~----------------------------- 290 (1049)
T KOG0307|consen 242 ASSPLKILEG--HQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLG----------------------------- 290 (1049)
T ss_pred cCCchhhhcc--cccceeeeccCCCCchhhhcccCCCCeeEecCCCceEee-----------------------------
Confidence 4 46666755 88899999999865 899999999999999999987220
Q ss_pred ecceEEecccceeEEeecCCcEEEeeecccCC-EEEEEecCCeEEEEEeCCC
Q 018248 289 VLPKYFSSKWSMAQFRLPENVQYLVGFGRQNN-TIVIVGLDGSYYKCEFDPM 339 (359)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~v~~~~~~ 339 (359)
.+....+++..+.|.|... .+++++-||.|-||.+...
T Consensus 291 -------------~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~ 329 (1049)
T KOG0307|consen 291 -------------ELPAQGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQGT 329 (1049)
T ss_pred -------------ecCCCCcceeeeeecCCCcchhhhheeccceeeeeeecC
Confidence 0111236778899999665 7788888999999998653
No 168
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.83 E-value=1.9e-16 Score=138.90 Aligned_cols=288 Identities=19% Similarity=0.324 Sum_probs=211.0
Q ss_pred CCCCCceEEEEEccCCCEEEEec-CCceEEEEcCCCcceeeeecccC-CCCceeEEEE-eccCCEEEEEecCCCCCCeEE
Q 018248 3 QPDPITIHHLALNQDHGCFATGT-ETGFRVYLSDPYKPIMRRDFDRN-PRGGTQLVSM-LFRSNIICLVNSGPHQSNKVM 79 (359)
Q Consensus 3 ~~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~-h~~~v~~~~~-~~~~~~~~~~~~~~~~d~~i~ 79 (359)
..|...|.++.+.+.+..++.++ |+.+.+|+...... ....+. + +...+..+.. .++....+..... .|+.+.
T Consensus 62 ~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~--~d~~~~ 137 (466)
T COG2319 62 RGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEK-LIKSLE-GLHDSSVSKLALSSPDGNSILLASSS--LDGTVK 137 (466)
T ss_pred eeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCce-eEEEEe-ccCCCceeeEEEECCCcceEEeccCC--CCccEE
Confidence 46889999999999999999998 99999999987641 122332 2 2225555555 4444523333222 479999
Q ss_pred EEECCC-ccEEeeec-cCcceeEEEEecceeEEE---e-cCeEEEEEcccceeeeeEeccCCCceeeeeecCCCccEEEe
Q 018248 80 IWDDHE-NRYLGELS-FRSEVKNVRLRRDRIVVV---L-NQKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAGPMVMAC 153 (359)
Q Consensus 80 iwd~~~-~~~~~~~~-~~~~v~~~~~~~~~~~~~---~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 153 (359)
+|+... ......+. |...|..+.|+|++..++ . ++.+++|++..+..+..+..|...+..++++|++. .++++
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~ 216 (466)
T COG2319 138 LWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGG-LLIAS 216 (466)
T ss_pred EEEecCCCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcc-eEEEE
Confidence 999887 66666666 889999999999997666 3 89999999988888888888888999999997776 23433
Q ss_pred cCCCCeeEEEEecCC-eeeE-EeecccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcE-EEEeecCCCCcceEEEE
Q 018248 154 PGLLKGQVRVEDYGT-KKSK-YITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSL-LQEMRRGAERAEIYSLA 230 (359)
Q Consensus 154 ~g~~d~~v~~~~~~~-~~~~-~~~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~-~~~~~~~~~~~~i~~~~ 230 (359)
++.|+.+++|+... .... .+..|.... ...|+|++.++++++.|+. +++|+++.... +..+.. |...+.++.
T Consensus 217 -~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~-~~~~~~~~~~~~~~~~~~--~~~~v~~~~ 291 (466)
T COG2319 217 -GSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGT-IRLWDLRSSSSLLRTLSG--HSSSVLSVA 291 (466)
T ss_pred -ecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEEecCCCc-EEEeeecCCCcEEEEEec--CCccEEEEE
Confidence 56899999997663 4444 477777765 4489999999999999999 99999987665 444433 678999999
Q ss_pred ecCCCCEEEEEcCCCcEEEEEccCCCCCCCCCccccCCCCCccCCCCCceeeeeEeeeecceEEecccceeEEeecCCcE
Q 018248 231 FSSNAQWLAASSDKGTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSAISSFRFIRGVLPKYFSSKWSMAQFRLPENVQ 310 (359)
Q Consensus 231 ~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 310 (359)
|+|++..+++++.|+.+++|+........ ... ...+...+
T Consensus 292 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~---------------------------------~~~-------~~~~~~~~ 331 (466)
T COG2319 292 FSPDGKLLASGSSDGTVRLWDLETGKLLS---------------------------------SLT-------LKGHEGPV 331 (466)
T ss_pred ECCCCCEEEEeeCCCcEEEEEcCCCceEE---------------------------------Eee-------ecccCCce
Confidence 99999988888888889999887765210 000 11223356
Q ss_pred EEeeecccCCEEEEE-ecCCeEEEEEeCCCC
Q 018248 311 YLVGFGRQNNTIVIV-GLDGSYYKCEFDPMK 340 (359)
Q Consensus 311 ~~~~~s~~~~~l~~~-~~dg~i~v~~~~~~~ 340 (359)
..+.|.+++..++.+ ..|+.+++|++....
T Consensus 332 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 362 (466)
T COG2319 332 SSLSFSPDGSLLVSGGSDDGTIRLWDLRTGK 362 (466)
T ss_pred EEEEECCCCCEEEEeecCCCcEEeeecCCCc
Confidence 777773333456555 578889988887643
No 169
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.82 E-value=1.2e-17 Score=144.54 Aligned_cols=261 Identities=11% Similarity=0.091 Sum_probs=179.2
Q ss_pred CceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEECCCccE--Ee-----eeccCccee
Q 018248 27 TGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDDHENRY--LG-----ELSFRSEVK 99 (359)
Q Consensus 27 ~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~--~~-----~~~~~~~v~ 99 (359)
+.+.||++...... ...+. -...+.++.+++....+++++. .+|.|.+||+..+.. .. ...|..++.
T Consensus 222 ~~~~vW~~~~p~~P-e~~~~--~~s~v~~~~f~p~~p~ll~gG~---y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~ 295 (555)
T KOG1587|consen 222 GVLLVWSLKNPNTP-ELVLE--SPSEVTCLKFCPFDPNLLAGGC---YNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVT 295 (555)
T ss_pred ceEEEEecCCCCCc-eEEEe--cCCceeEEEeccCCcceEEeec---cCceEEEEEccCCCCCCCcccccccccCCcCeE
Confidence 35899999865222 22221 2577888888876555554444 689999999887654 22 223889999
Q ss_pred EEEEecce---eEEE--ecCeEEEEEccccee-e-----eeEe------ccCCCceeeeeecCCCccEEEecCCCCeeEE
Q 018248 100 NVRLRRDR---IVVV--LNQKVYVYNFTDLKL-V-----DQIE------TVVNPTGLCDVSQNAGPMVMACPGLLKGQVR 162 (359)
Q Consensus 100 ~~~~~~~~---~~~~--~d~~i~i~d~~~~~~-~-----~~~~------~~~~~~~~~~~~~~~~~~~l~~~g~~d~~v~ 162 (359)
.+.|..+. .++. .||.|..|+++.... . .... .....+..++|.+.....+++ |++.|.|.
T Consensus 296 ~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiV--GTe~G~v~ 373 (555)
T KOG1587|consen 296 AVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIV--GTEEGKVY 373 (555)
T ss_pred EEEEeccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEE--EcCCcEEE
Confidence 99996542 2333 999999998754321 1 1111 112345677887776665554 67899998
Q ss_pred E-EecCC--ee------eEEeecccccccEEEEccCCcEEEEEeCCCCeEEEEEcC-CCcEEEEeecCCCCcceEEEEec
Q 018248 163 V-EDYGT--KK------SKYITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTM-DGSLLQEMRRGAERAEIYSLAFS 232 (359)
Q Consensus 163 ~-~~~~~--~~------~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~-~~~~~~~~~~~~~~~~i~~~~~s 232 (359)
. ..... .. ...+..|.++|+++.++|-+..++..+.|-+ ++||... ...++..+.. +...+++++||
T Consensus 374 ~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~-vriWs~~~~~~Pl~~~~~--~~~~v~~vaWS 450 (555)
T KOG1587|consen 374 KGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWT-VRIWSEDVIASPLLSLDS--SPDYVTDVAWS 450 (555)
T ss_pred EEeccCCcccccccccccccccccCcceEeeecCCCccceeeeeccce-eEeccccCCCCcchhhhh--ccceeeeeEEc
Confidence 8 33222 22 3345678899999999998875555555888 9999977 6667767765 55679999999
Q ss_pred CCC-CEEEEEcCCCcEEEEEccCCCCCCCCCccccCCCCCccCCCCCceeeeeEeeeecceEEecccceeEEeecCCcEE
Q 018248 233 SNA-QWLAASSDKGTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSAISSFRFIRGVLPKYFSSKWSMAQFRLPENVQY 311 (359)
Q Consensus 233 ~~~-~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 311 (359)
|-. ..++++..||.|.|||+......+. ++........+
T Consensus 451 ptrpavF~~~d~~G~l~iWDLl~~~~~Pv----------------------------------------~s~~~~~~~l~ 490 (555)
T KOG1587|consen 451 PTRPAVFATVDGDGNLDIWDLLQDDEEPV----------------------------------------LSQKVCSPALT 490 (555)
T ss_pred CcCceEEEEEcCCCceehhhhhccccCCc----------------------------------------ccccccccccc
Confidence 965 4677888899999999988764431 00111122345
Q ss_pred EeeecccCCEEEEEecCCeEEEEEeCC
Q 018248 312 LVGFGRQNNTIVIVGLDGSYYKCEFDP 338 (359)
Q Consensus 312 ~~~~s~~~~~l~~~~~dg~i~v~~~~~ 338 (359)
.+.|+++|+.|++|...|.+++|++..
T Consensus 491 ~~~~s~~g~~lavGd~~G~~~~~~l~~ 517 (555)
T KOG1587|consen 491 RVRWSPNGKLLAVGDANGTTHILKLSE 517 (555)
T ss_pred eeecCCCCcEEEEecCCCcEEEEEcCc
Confidence 678899999999999999999999964
No 170
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.81 E-value=1.7e-19 Score=145.90 Aligned_cols=227 Identities=17% Similarity=0.171 Sum_probs=188.8
Q ss_pred ceEEEEEccCCCEEEEec-CCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEECCCc
Q 018248 8 TIHHLALNQDHGCFATGT-ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDDHEN 86 (359)
Q Consensus 8 ~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~ 86 (359)
.-+.+.++.+|++|+.|+ .|.+..+|..++...+...+ ...|..+.|..+..+++++- ...+.||| ..|
T Consensus 131 GPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v----~Etv~Dv~~LHneq~~AVAQ-----K~y~yvYD-~~G 200 (545)
T KOG1272|consen 131 GPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINV----METVRDVTFLHNEQFFAVAQ-----KKYVYVYD-NNG 200 (545)
T ss_pred CCeeeeecCCccEEEecCCccceeeeecccceeeeeeeh----hhhhhhhhhhcchHHHHhhh-----hceEEEec-CCC
Confidence 457889999999999999 99999999999888777666 57788888888888877664 68999999 888
Q ss_pred cEEeeeccCcceeEEEEecceeEEE---ecCeEEEEEcccceeeeeEeccCCCceeeeeecCCCccEEEecCCCCeeEEE
Q 018248 87 RYLGELSFRSEVKNVRLRRDRIVVV---LNQKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAGPMVMACPGLLKGQVRV 163 (359)
Q Consensus 87 ~~~~~~~~~~~v~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~v~~ 163 (359)
..++.++....|..+.|.|...+++ ..|.++--|+.+|+.+..+....+.+.+++-+|-+. +...|...|+|.+
T Consensus 201 tElHClk~~~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~Na---Vih~GhsnGtVSl 277 (545)
T KOG1272|consen 201 TELHCLKRHIRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNA---VIHLGHSNGTVSL 277 (545)
T ss_pred cEEeehhhcCchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccc---eEEEcCCCceEEe
Confidence 9999998778899999999988887 789999999999999999988888777777777654 4444888999999
Q ss_pred EecCC-eeeEEeecccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcEEEEeecCCCCcceEEEEecCCCCEEEEEc
Q 018248 164 EDYGT-KKSKYITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSNAQWLAASS 242 (359)
Q Consensus 164 ~~~~~-~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~ 242 (359)
|..+. .++..+..|.++|.++++.++|+|+||.+.|.. ++|||+++...+.++.. +.+...+++|..| +||.+
T Consensus 278 WSP~skePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~-~kIWDlR~~~ql~t~~t---p~~a~~ls~Sqkg-lLA~~- 351 (545)
T KOG1272|consen 278 WSPNSKEPLVKILCHRGPVSSIAVDRGGRYMATTGLDRK-VKIWDLRNFYQLHTYRT---PHPASNLSLSQKG-LLALS- 351 (545)
T ss_pred cCCCCcchHHHHHhcCCCcceEEECCCCcEEeecccccc-eeEeeeccccccceeec---CCCcccccccccc-ceeee-
Confidence 99886 556667889999999999999999999999999 99999999888777764 3466788888655 44444
Q ss_pred CCCcEEEEEcc
Q 018248 243 DKGTVHVFGLK 253 (359)
Q Consensus 243 ~dg~i~iw~~~ 253 (359)
....|.||.=.
T Consensus 352 ~G~~v~iw~d~ 362 (545)
T KOG1272|consen 352 YGDHVQIWKDA 362 (545)
T ss_pred cCCeeeeehhh
Confidence 44469999643
No 171
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.81 E-value=1.3e-17 Score=138.67 Aligned_cols=290 Identities=14% Similarity=0.186 Sum_probs=212.8
Q ss_pred CCCCceEEEEEccCCCEE-EEec-CCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEE
Q 018248 4 PDPITIHHLALNQDHGCF-ATGT-ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIW 81 (359)
Q Consensus 4 ~h~~~v~~~~~s~~g~~l-~~~~-d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iw 81 (359)
.++..-+.|..+|||+|+ |+|. .-.|++||+......+.+.+. ...|...-++-+-...++.. .|..|.+-
T Consensus 49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlD---ae~V~feiLsDD~SK~v~L~----~DR~IefH 121 (703)
T KOG2321|consen 49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLD---AEVVDFEILSDDYSKSVFLQ----NDRTIEFH 121 (703)
T ss_pred CCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeeccc---ccceeEEEeccchhhheEee----cCceeeeh
Confidence 466778899999999998 5666 899999999988888888775 56666666655555556666 57888776
Q ss_pred ECCCccEEeeeccCcceeEEEEecc--eeEEE-ecCeEEEEEcccceeeeeEeccCCCceeeeeecCCCccEEEecCCCC
Q 018248 82 DDHENRYLGELSFRSEVKNVRLRRD--RIVVV-LNQKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAGPMVMACPGLLK 158 (359)
Q Consensus 82 d~~~~~~~~~~~~~~~v~~~~~~~~--~~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d 158 (359)
. . +..-..++.+..-.+++++.- ..+++ ....|+-++++.|+-+..+......++++.+++-.. ++++ |..+
T Consensus 122 a-k-~G~hy~~RIP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hg--Lla~-Gt~~ 196 (703)
T KOG2321|consen 122 A-K-YGRHYRTRIPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHG--LLAC-GTED 196 (703)
T ss_pred h-h-cCeeeeeecCcCCccccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecCccc--eEEe-cccC
Confidence 4 2 222223333444556666532 23334 778899999999999999988888899999888765 3665 8889
Q ss_pred eeEEEEecCCeeeE-E------eecccc-----cccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcEEEEeecCCCCcce
Q 018248 159 GQVRVEDYGTKKSK-Y------ITAHAS-----RIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRRGAERAEI 226 (359)
Q Consensus 159 ~~v~~~~~~~~~~~-~------~~~~~~-----~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~i 226 (359)
|.|..|+.+.+... . +..|.+ .|+++.|+.+|-.+++|..+|. |.|||+++.+++..-. |...-+|
T Consensus 197 g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~-v~iyDLRa~~pl~~kd-h~~e~pi 274 (703)
T KOG2321|consen 197 GVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGS-VLIYDLRASKPLLVKD-HGYELPI 274 (703)
T ss_pred ceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCc-EEEEEcccCCceeecc-cCCccce
Confidence 99999998764321 1 222333 4999999999999999999999 9999999998886554 4456799
Q ss_pred EEEEecCC--CCEEEEEcCCCcEEEEEccCCCCCCCCCccccCCCCCccCCCCCceeeeeEeeeecceEEecccceeEEe
Q 018248 227 YSLAFSSN--AQWLAASSDKGTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSAISSFRFIRGVLPKYFSSKWSMAQFR 304 (359)
Q Consensus 227 ~~~~~s~~--~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (359)
..+.|.+. +..+++. +...++|||-.++++.. ...
T Consensus 275 ~~l~~~~~~~q~~v~S~-Dk~~~kiWd~~~Gk~~a---------------------------------siE--------- 311 (703)
T KOG2321|consen 275 KKLDWQDTDQQNKVVSM-DKRILKIWDECTGKPMA---------------------------------SIE--------- 311 (703)
T ss_pred eeecccccCCCceEEec-chHHhhhcccccCCcee---------------------------------ecc---------
Confidence 99999775 3455554 45679999999988431 000
Q ss_pred ecCCcEEEeeecccCCEEEEEecCCeEEEEEeCCCCCCceEEeeeccccCC
Q 018248 305 LPENVQYLVGFGRQNNTIVIVGLDGSYYKCEFDPMKGGEMHQLEHYKFLKP 355 (359)
Q Consensus 305 ~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~~~~~ 355 (359)
|...++.+++-|++.+++++-+++.+..|-++. -|+. ..|.+||++
T Consensus 312 -pt~~lND~C~~p~sGm~f~Ane~~~m~~yyiP~--LGPa--PrWCSfLdn 357 (703)
T KOG2321|consen 312 -PTSDLNDFCFVPGSGMFFTANESSKMHTYYIPS--LGPA--PRWCSFLDN 357 (703)
T ss_pred -ccCCcCceeeecCCceEEEecCCCcceeEEccc--cCCC--chhhhHHHh
Confidence 223467889999999999999999999887765 3444 458888875
No 172
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.81 E-value=2.8e-18 Score=145.09 Aligned_cols=234 Identities=15% Similarity=0.192 Sum_probs=177.5
Q ss_pred CCCCceEEEEEccCCCEEEEec-CCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEE
Q 018248 4 PDPITIHHLALNQDHGCFATGT-ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWD 82 (359)
Q Consensus 4 ~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd 82 (359)
.|++.|+|++|+.||+++|+|+ |+.|.+|+..- +.. ... .|.+.+.++.|.|-...++.++- ...-+|.
T Consensus 51 gHKDtVycVAys~dGkrFASG~aDK~VI~W~~kl-EG~--LkY--SH~D~IQCMsFNP~~h~LasCsL-----sdFglWS 120 (1081)
T KOG1538|consen 51 GHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKL-EGI--LKY--SHNDAIQCMSFNPITHQLASCSL-----SDFGLWS 120 (1081)
T ss_pred cccceEEEEEEccCCceeccCCCceeEEEecccc-cce--eee--ccCCeeeEeecCchHHHhhhcch-----hhccccC
Confidence 5999999999999999999999 99999998653 222 222 48999999988887777666552 5567887
Q ss_pred CCCccEEeeeccCcceeEEEEecceeEEE---ecCeEEEEEcccceeeeeEe---ccCCCceeeeeecCCCc---cEEEe
Q 018248 83 DHENRYLGELSFRSEVKNVRLRRDRIVVV---LNQKVYVYNFTDLKLVDQIE---TVVNPTGLCDVSQNAGP---MVMAC 153 (359)
Q Consensus 83 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~---~~~~~~~~~~~~~~~~~---~~l~~ 153 (359)
..+ +.+...+....+.+.+|..||++++ .+|+|.+-+- +++....++ +...++..++|+|.... -++++
T Consensus 121 ~~q-K~V~K~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk-~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV 198 (1081)
T KOG1538|consen 121 PEQ-KSVSKHKSSSRIICCSWTNDGQYLALGMFNGTISIRNK-NGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAV 198 (1081)
T ss_pred hhh-hhHHhhhhheeEEEeeecCCCcEEEEeccCceEEeecC-CCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEE
Confidence 443 4444455567889999999999998 8999999875 444433443 35678899999997532 22333
Q ss_pred cCCCCeeEEEEecCCeeeEEeecccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcEEEEeecCCCCcceEEEEecC
Q 018248 154 PGLLKGQVRVEDYGTKKSKYITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSS 233 (359)
Q Consensus 154 ~g~~d~~v~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~ 233 (359)
.....++..+..+++.+..-+.-.-...|+.+.|+|.++..|+.|+. +.+|- +.|-.+.++.. ....|+.++..|
T Consensus 199 -~DW~qTLSFy~LsG~~Igk~r~L~FdP~CisYf~NGEy~LiGGsdk~-L~~fT-R~GvrLGTvg~--~D~WIWtV~~~P 273 (1081)
T KOG1538|consen 199 -ADWGQTLSFYQLSGKQIGKDRALNFDPCCISYFTNGEYILLGGSDKQ-LSLFT-RDGVRLGTVGE--QDSWIWTVQAKP 273 (1081)
T ss_pred -EeccceeEEEEecceeecccccCCCCchhheeccCCcEEEEccCCCc-eEEEe-ecCeEEeeccc--cceeEEEEEEcc
Confidence 22344555566666655544444556789999999999999999999 99995 67877777754 557999999999
Q ss_pred CCCEEEEEcCCCcEEEEEccC
Q 018248 234 NAQWLAASSDKGTVHVFGLKV 254 (359)
Q Consensus 234 ~~~~l~~~~~dg~i~iw~~~~ 254 (359)
++++++.|+.||+|--|++..
T Consensus 274 NsQ~v~~GCqDGTiACyNl~f 294 (1081)
T KOG1538|consen 274 NSQYVVVGCQDGTIACYNLIF 294 (1081)
T ss_pred CCceEEEEEccCeeehhhhHH
Confidence 999999999999999998854
No 173
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.80 E-value=2.3e-17 Score=131.17 Aligned_cols=305 Identities=13% Similarity=0.122 Sum_probs=197.6
Q ss_pred CCCCceEEEEEccCCCEEEEec-CCceEEEEcCCCc----ceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeE
Q 018248 4 PDPITIHHLALNQDHGCFATGT-ETGFRVYLSDPYK----PIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKV 78 (359)
Q Consensus 4 ~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~----~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i 78 (359)
.|.+-|.++.||.++++|++|+ |..+++|+++..- .+........|...|.+++|... +..++ +++ .+++|
T Consensus 54 ~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~-N~~~~-SG~--~~~~V 129 (609)
T KOG4227|consen 54 EHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLE-NRFLY-SGE--RWGTV 129 (609)
T ss_pred hhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccC-CeeEe-cCC--Cccee
Confidence 5889999999999999999999 8999999987321 11112221134455666655432 33333 344 68999
Q ss_pred EEEECCCccEEeeeccC---cceeEEEEecceeEEE---ecCeEEEEEcccce-eeeeE--eccCCCceeeeeecCCCcc
Q 018248 79 MIWDDHENRYLGELSFR---SEVKNVRLRRDRIVVV---LNQKVYVYNFTDLK-LVDQI--ETVVNPTGLCDVSQNAGPM 149 (359)
Q Consensus 79 ~iwd~~~~~~~~~~~~~---~~v~~~~~~~~~~~~~---~d~~i~i~d~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~ 149 (359)
..-|+++.+.+..+.+. +.|..+..+|..+.++ .++.|.+||++..+ .+..+ .........+.|+|-...+
T Consensus 130 I~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~L 209 (609)
T KOG4227|consen 130 IKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETPAL 209 (609)
T ss_pred EeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCcee
Confidence 99999999999988855 4899999999766665 89999999997654 22222 2233445667788876653
Q ss_pred EEEecCCCCeeEEEEecCCeeeEE--------eecccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcEEEEeecCC
Q 018248 150 VMACPGLLKGQVRVEDYGTKKSKY--------ITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRRGA 221 (359)
Q Consensus 150 ~l~~~g~~d~~v~~~~~~~~~~~~--------~~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~~~~~~~~~ 221 (359)
+++ .+..+-+-+|+.+...... +......-.++.|+|+|..+++--.... -.+||+-+..+. .++..+
T Consensus 210 -i~~-~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~-P~~~D~~S~R~~-V~k~D~ 285 (609)
T KOG4227|consen 210 -ILV-NSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKC-PLYFDFISQRCF-VLKSDH 285 (609)
T ss_pred -EEe-ccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCC-CEEeeeecccce-eEeccC
Confidence 333 4567778888887533211 1111223367889999998877665554 567887664432 222211
Q ss_pred C------CcceEEEEecCCCCEEEEEcCCCcEEEEEccCCCCCCCCCccccCCCCCccCCCCCceeeeeEeeeecceEEe
Q 018248 222 E------RAEIYSLAFSSNAQWLAASSDKGTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSAISSFRFIRGVLPKYFS 295 (359)
Q Consensus 222 ~------~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (359)
. ...+.+++|-.|- .+++|+.+-.|++|.+........+.+ .|..... +|.-.-
T Consensus 286 N~~GY~N~~T~KS~~F~~D~-~v~tGSD~~~i~~WklP~~~ds~G~~~-----------IG~~~~~--------~~~~~~ 345 (609)
T KOG4227|consen 286 NPNGYCNIKTIKSMTFIDDY-TVATGSDHWGIHIWKLPRANDSYGFTQ-----------IGHDEEE--------MPSEIF 345 (609)
T ss_pred CCCcceeeeeeeeeeeecce-eeeccCcccceEEEecCCCccccCccc-----------cCcchhh--------Cchhhe
Confidence 1 1356677886554 488999998999999976542211100 0000000 111111
Q ss_pred cccceeEEeecCCcEEEeeecccCCEEEEEecCCeEEEEEe
Q 018248 296 SKWSMAQFRLPENVQYLVGFGRQNNTIVIVGLDGSYYKCEF 336 (359)
Q Consensus 296 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~ 336 (359)
....+..++.|...++.+.|+|....|++.+.+..+++|.-
T Consensus 346 i~~~~~VLrGHRSv~NQVRF~~H~~~l~SSGVE~~~KlWS~ 386 (609)
T KOG4227|consen 346 IEKELTVLRGHRSVPNQVRFSQHNNLLVSSGVENSFKLWSD 386 (609)
T ss_pred ecceeEEEecccccccceeecCCcceEeccchhhheecccc
Confidence 12334456777788899999999999999999999999963
No 174
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.80 E-value=8.7e-18 Score=130.34 Aligned_cols=238 Identities=12% Similarity=0.132 Sum_probs=168.2
Q ss_pred CCCCceEEEEEccCC----CEEEEec-CCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeE
Q 018248 4 PDPITIHHLALNQDH----GCFATGT-ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKV 78 (359)
Q Consensus 4 ~h~~~v~~~~~s~~g----~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i 78 (359)
.|+..-+.++|+-|- .++|+|+ -|.|+|.|+..++.. ..+. ||...|..+.+.|....+++.+. .|..|
T Consensus 87 d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~--~~~~-ghG~sINeik~~p~~~qlvls~S---kD~sv 160 (385)
T KOG1034|consen 87 DHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCS--KNYR-GHGGSINEIKFHPDRPQLVLSAS---KDHSV 160 (385)
T ss_pred CCCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhc--ccee-ccCccchhhhcCCCCCcEEEEec---CCceE
Confidence 478888999998643 3677777 899999999876544 4444 89999999999987654444333 78999
Q ss_pred EEEECCCccEEeeec----cCcceeEEEEecceeEEE---ecCeEEEEEcccceeeeeE---------------------
Q 018248 79 MIWDDHENRYLGELS----FRSEVKNVRLRRDRIVVV---LNQKVYVYNFTDLKLVDQI--------------------- 130 (359)
Q Consensus 79 ~iwd~~~~~~~~~~~----~~~~v~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~--------------------- 130 (359)
++|++++..++..+. |.+.|.++.|++++..++ .|.+|++|++...+....+
T Consensus 161 RlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~ 240 (385)
T KOG1034|consen 161 RLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTH 240 (385)
T ss_pred EEEeccCCeEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccc
Confidence 999999999999885 889999999999999988 8999999999643211111
Q ss_pred -------eccCCCceeeeeecCCCccEEEecCCCCeeEEEEecC-C--------------eeeEEeecccccccEEEE--
Q 018248 131 -------ETVVNPTGLCDVSQNAGPMVMACPGLLKGQVRVEDYG-T--------------KKSKYITAHASRIASIAM-- 186 (359)
Q Consensus 131 -------~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~v~~~~~~-~--------------~~~~~~~~~~~~i~~~~~-- 186 (359)
..|...|.++.| -++ ++++-+ -++.|..|... . ..+..+.-....|+-+.|
T Consensus 241 fp~fst~diHrnyVDCvrw--~gd--~ilSks-cenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~ 315 (385)
T KOG1034|consen 241 FPDFSTTDIHRNYVDCVRW--FGD--FILSKS-CENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAF 315 (385)
T ss_pred cccccccccccchHHHHHH--Hhh--heeecc-cCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEee
Confidence 112222222222 222 233323 35677778762 1 112233333445555544
Q ss_pred ccCCcEEEEEeCCCCeEEEEEcCCCcEE--EEeecCCCCcceEEEEecCCCCEEEEEcCCCcEEEEEcc
Q 018248 187 TLDGRFVATASSKGTLIRVFNTMDGSLL--QEMRRGAERAEIYSLAFSSNAQWLAASSDKGTVHVFGLK 253 (359)
Q Consensus 187 s~~~~~l~~~~~dg~~i~iwd~~~~~~~--~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~ 253 (359)
.|-++.||.|...|. |.+||++..++. .++........|...+||.||.+|+..++|++|.-||.-
T Consensus 316 d~~~~~la~gnq~g~-v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 316 DPWQKMLALGNQSGK-VYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDRV 383 (385)
T ss_pred cHHHHHHhhccCCCc-EEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEee
Confidence 567889999999999 999999887653 222222234689999999999999999999999999864
No 175
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.80 E-value=8e-18 Score=135.98 Aligned_cols=200 Identities=15% Similarity=0.134 Sum_probs=142.9
Q ss_pred CCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEECCCcc----EEeeec-cCcceeEEEEecce--eEEE--ecCeEEE
Q 018248 48 NPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDDHENR----YLGELS-FRSEVKNVRLRRDR--IVVV--LNQKVYV 118 (359)
Q Consensus 48 ~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~----~~~~~~-~~~~v~~~~~~~~~--~~~~--~d~~i~i 118 (359)
-|.+.+.+++|+|..+.-.++.|. .-|+|-+||+.+.+ -+..+. |..+|.++.|+|.. +++. .||+|++
T Consensus 184 v~~~Rit~l~fHPt~~~~lva~Gd--K~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~ 261 (498)
T KOG4328|consen 184 VTDRRITSLAFHPTENRKLVAVGD--KGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRL 261 (498)
T ss_pred ecccceEEEEecccCcceEEEEcc--CCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCceeee
Confidence 358999999999998844444444 35999999995322 233333 88999999999964 3444 9999999
Q ss_pred EEcccceeeeeEec--cCCCceeeeeecCCCccEEEecCCCCeeEEEEecCC--eeeEEeecccccccEEEEccCCc-EE
Q 018248 119 YNFTDLKLVDQIET--VVNPTGLCDVSQNAGPMVMACPGLLKGQVRVEDYGT--KKSKYITAHASRIASIAMTLDGR-FV 193 (359)
Q Consensus 119 ~d~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~g~~d~~v~~~~~~~--~~~~~~~~~~~~i~~~~~s~~~~-~l 193 (359)
-|++.+.....+.. .......+.++..... +.. +..=|...+|+.+. .....+.-|+..|++++++|... +|
T Consensus 262 ~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~--vl~-~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~l 338 (498)
T KOG4328|consen 262 QDFEGNISEEVLSLDTDNIWFSSLDFSAESRS--VLF-GDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFL 338 (498)
T ss_pred eeecchhhHHHhhcCccceeeeeccccCCCcc--EEE-eecccceEEEEeecCCccchhhhhhhcccceeecCCCCchhe
Confidence 99976543333332 2333344555555443 333 33455777766654 44566778888999999999655 78
Q ss_pred EEEeCCCCeEEEEEcCCCcEEEE--eecCCCCcceEEEEecCCCCEEEEEcCCCcEEEEEcc
Q 018248 194 ATASSKGTLIRVFNTMDGSLLQE--MRRGAERAEIYSLAFSSNAQWLAASSDKGTVHVFGLK 253 (359)
Q Consensus 194 ~~~~~dg~~i~iwd~~~~~~~~~--~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~ 253 (359)
||++.|++ .+|||++.-..... +..-.|...|.+..|||++-.|++.+.|..|+|||..
T Consensus 339 aT~s~D~T-~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss 399 (498)
T KOG4328|consen 339 ATASLDQT-AKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSS 399 (498)
T ss_pred eecccCcc-eeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecc
Confidence 99999999 99999986433222 2222378899999999988889999999999999985
No 176
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.80 E-value=4.9e-19 Score=152.91 Aligned_cols=285 Identities=11% Similarity=0.166 Sum_probs=196.4
Q ss_pred CCCCceEEEEEccCCCEEEEec-CCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEE
Q 018248 4 PDPITIHHLALNQDHGCFATGT-ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWD 82 (359)
Q Consensus 4 ~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd 82 (359)
.|.+.|+|+.|...|.++++|+ |..++||..++.... ...+ ||.+.+..++.+.+.-.++..+ .|..|++|.
T Consensus 188 gH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~l--As~r-Ghs~ditdlavs~~n~~iaaaS----~D~vIrvWr 260 (1113)
T KOG0644|consen 188 GHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCL--ASCR-GHSGDITDLAVSSNNTMIAAAS----NDKVIRVWR 260 (1113)
T ss_pred hhhhheeeeeeccccceEeecCccceeeeeeccchhhh--ccCC-CCccccchhccchhhhhhhhcc----cCceEEEEe
Confidence 4788999999999999999999 888999998876555 5555 9999999988877666666666 789999999
Q ss_pred CCCccEEeeec-cCcceeEEEEecceeEEE-ecCeEEEEEcccceeeeeEec-----cCCCceeeeeecCCCccEEEecC
Q 018248 83 DHENRYLGELS-FRSEVKNVRLRRDRIVVV-LNQKVYVYNFTDLKLVDQIET-----VVNPTGLCDVSQNAGPMVMACPG 155 (359)
Q Consensus 83 ~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~-~d~~i~i~d~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~l~~~g 155 (359)
+.++.++..+. |.+.|++++|+|-. -. .||++++||.+ ...+..... ...-+..+.+...+.. .++ |
T Consensus 261 l~~~~pvsvLrghtgavtaiafsP~~--sss~dgt~~~wd~r-~~~~~y~prp~~~~~~~~~~s~~~~~~~~~--f~T-g 334 (1113)
T KOG0644|consen 261 LPDGAPVSVLRGHTGAVTAIAFSPRA--SSSDDGTCRIWDAR-LEPRIYVPRPLKFTEKDLVDSILFENNGDR--FLT-G 334 (1113)
T ss_pred cCCCchHHHHhccccceeeeccCccc--cCCCCCceEecccc-ccccccCCCCCCcccccceeeeeccccccc--ccc-c
Confidence 99999999998 99999999999965 22 89999999976 111111110 0111112222222222 333 5
Q ss_pred CCCeeEEEEecCCeeeEEeecccccccEEEEccCC-cEEEEEeCCCCeEEEEEcCCCcEEEEeecCCCCcceEEEEecCC
Q 018248 156 LLKGQVRVEDYGTKKSKYITAHASRIASIAMTLDG-RFVATASSKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSN 234 (359)
Q Consensus 156 ~~d~~v~~~~~~~~~~~~~~~~~~~i~~~~~s~~~-~~l~~~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~ 234 (359)
+.|+.-..|.... +..+...+.-+.++.+- .+.+++-.+-. +++|++.+|...+.+.+ |...+.-+.++|-
T Consensus 335 s~d~ea~n~e~~~-----l~~~~~~lif~t~ssd~~~~~~~ar~~~~-~~vwnl~~g~l~H~l~g--hsd~~yvLd~Hpf 406 (1113)
T KOG0644|consen 335 SRDGEARNHEFEQ-----LAWRSNLLIFVTRSSDLSSIVVTARNDHR-LCVWNLYTGQLLHNLMG--HSDEVYVLDVHPF 406 (1113)
T ss_pred cCCcccccchhhH-----hhhhccceEEEeccccccccceeeeeeeE-eeeeecccchhhhhhcc--cccceeeeeecCC
Confidence 5555544433221 11112222222222222 34555656666 89999999999988887 5568888999985
Q ss_pred C-CEEEEEcCCCcEEEEEccCCCCCCCCCccccCCCCCccCCCCCceeeeeEeeeecceEEecccceeEEeecCCcEEEe
Q 018248 235 A-QWLAASSDKGTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSAISSFRFIRGVLPKYFSSKWSMAQFRLPENVQYLV 313 (359)
Q Consensus 235 ~-~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 313 (359)
. +...+++.||...|||+-.+.+.. .++. +.+.+...
T Consensus 407 n~ri~msag~dgst~iwdi~eg~pik--------------------------------~y~~----------gh~kl~d~ 444 (1113)
T KOG0644|consen 407 NPRIAMSAGYDGSTIIWDIWEGIPIK--------------------------------HYFI----------GHGKLVDG 444 (1113)
T ss_pred CcHhhhhccCCCceEeeecccCCcce--------------------------------eeec----------ccceeecc
Confidence 4 556788999999999999887542 1221 23456678
Q ss_pred eecccCCEEEEEecCCeEEEEEeCCCCCCceEEeeecccc
Q 018248 314 GFGRQNNTIVIVGLDGSYYKCEFDPMKGGEMHQLEHYKFL 353 (359)
Q Consensus 314 ~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~~~ 353 (359)
+||+||..++....-|.++|..... +.....+++.+|+
T Consensus 445 kFSqdgts~~lsd~hgql~i~g~gq--s~s~k~ak~dqff 482 (1113)
T KOG0644|consen 445 KFSQDGTSIALSDDHGQLYILGTGQ--SKSQKKAKYDQFF 482 (1113)
T ss_pred ccCCCCceEecCCCCCceEEeccCC--CccccccccceEe
Confidence 9999999999999999999886543 4444555666554
No 177
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.80 E-value=1.7e-17 Score=132.18 Aligned_cols=240 Identities=13% Similarity=0.143 Sum_probs=170.6
Q ss_pred CCCCceEEEEEccCCCEEEEec-CCceEEEEcC--------C------CcceeeeecccCCCCceeEEEEeccCCEEEEE
Q 018248 4 PDPITIHHLALNQDHGCFATGT-ETGFRVYLSD--------P------YKPIMRRDFDRNPRGGTQLVSMLFRSNIICLV 68 (359)
Q Consensus 4 ~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~--------~------~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~ 68 (359)
.|...|+++.|+|+|..||+|+ +|.+.+|... + ......+.+. +|...+..++|+++++.++..
T Consensus 63 ~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr-~h~~diydL~Ws~d~~~l~s~ 141 (434)
T KOG1009|consen 63 RHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLR-GHRDDIYDLAWSPDSNFLVSG 141 (434)
T ss_pred CCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEec-ccccchhhhhccCCCceeeee
Confidence 5889999999999999999999 8899999876 2 1122233444 899999999999999988887
Q ss_pred ecCCCCCCeEEEEECCCccEEeeec-cCcceeEEEEecceeEEE---ecCeEEEEEcccceeeeeEe--------cc---
Q 018248 69 NSGPHQSNKVMIWDDHENRYLGELS-FRSEVKNVRLRRDRIVVV---LNQKVYVYNFTDLKLVDQIE--------TV--- 133 (359)
Q Consensus 69 ~~~~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~--------~~--- 133 (359)
+ -|+.+++||+..|+....+. |...+..++|.|-+++++ .|...+.+.+...+.++... ..
T Consensus 142 s----~dns~~l~Dv~~G~l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e 217 (434)
T KOG1009|consen 142 S----VDNSVRLWDVHAGQLLAILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNERE 217 (434)
T ss_pred e----ccceEEEEEeccceeEeeccccccccceeecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCC
Confidence 7 68999999999999999998 999999999999999988 56656666554333222211 00
Q ss_pred ------------CCCceeeeeecCCCccEEEecCCCCeeEEE---------EecCC----eeeEEeecccccccEEEEcc
Q 018248 134 ------------VNPTGLCDVSQNAGPMVMACPGLLKGQVRV---------EDYGT----KKSKYITAHASRIASIAMTL 188 (359)
Q Consensus 134 ------------~~~~~~~~~~~~~~~~~l~~~g~~d~~v~~---------~~~~~----~~~~~~~~~~~~i~~~~~s~ 188 (359)
......++|+|++.. +++. +|.+++ |..+. ++...+.....+...+.|+|
T Consensus 218 ~~s~rLfhDeTlksFFrRlsfTPdG~l--lvtP---ag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~p 292 (434)
T KOG1009|consen 218 GKSTRLFHDETLKSFFRRLSFTPDGSL--LVTP---AGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSP 292 (434)
T ss_pred cceeeeeecCchhhhhhhcccCCCCcE--EEcc---cceeeeCCceeeceeEeeccccccCceeecCCCCcceEEEEeee
Confidence 011234577777653 4432 222221 22222 33334444444455555544
Q ss_pred ------------------CCcEEEEEeCCCCeEEEEEcCCCcEEEEeecCCCCcceEEEEecCCCCEEEEEcCCCcEEEE
Q 018248 189 ------------------DGRFVATASSKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSNAQWLAASSDKGTVHVF 250 (359)
Q Consensus 189 ------------------~~~~l~~~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw 250 (359)
-+-.+|.++.+ . |.+||.++..++..... .|-..|+.++|++||..|+..+.||...+-
T Consensus 293 Vy~elrp~~~~~~~~~lpyrlvfaiAt~~-s-vyvydtq~~~P~~~v~n-ihy~~iTDiaws~dg~~l~vSS~DGyCS~v 369 (434)
T KOG1009|consen 293 VYYELRPLSSEKFLFVLPYRLVFAIATKN-S-VYVYDTQTLEPLAVVDN-IHYSAITDIAWSDDGSVLLVSSTDGFCSLV 369 (434)
T ss_pred eEEEeccccccccccccccceEEEEeecc-e-EEEeccccccceEEEee-eeeeeecceeecCCCcEEEEeccCCceEEE
Confidence 33356666666 4 99999999888877653 366899999999999999999999998888
Q ss_pred EccCCC
Q 018248 251 GLKVDS 256 (359)
Q Consensus 251 ~~~~~~ 256 (359)
-++..+
T Consensus 370 tfe~~e 375 (434)
T KOG1009|consen 370 TFEPWE 375 (434)
T ss_pred EEcchh
Confidence 777765
No 178
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.80 E-value=2.7e-17 Score=127.84 Aligned_cols=274 Identities=11% Similarity=0.078 Sum_probs=186.3
Q ss_pred EEEEccCCCEEEEecCCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEECCCccEEe
Q 018248 11 HLALNQDHGCFATGTETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDDHENRYLG 90 (359)
Q Consensus 11 ~~~~s~~g~~l~~~~d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~ 90 (359)
-++|||+|+++|++++-.+.|-|.++.+....... -..|..+.|..+.-.++.+.. .++.|.+|++.+.+...
T Consensus 13 ~c~fSp~g~yiAs~~~yrlviRd~~tlq~~qlf~c----ldki~yieW~ads~~ilC~~y---k~~~vqvwsl~Qpew~c 85 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSRYRLVIRDSETLQLHQLFLC----LDKIVYIEWKADSCHILCVAY---KDPKVQVWSLVQPEWYC 85 (447)
T ss_pred ceeECCCCCeeeeeeeeEEEEeccchhhHHHHHHH----HHHhhheeeeccceeeeeeee---ccceEEEEEeecceeEE
Confidence 46899999999999977888989887665432222 356677788766665554443 57899999999999888
Q ss_pred eec-cCcceeEEEEecceeEEE----ecCeEEEEEcccceeeeeEeccCCCceeeeeecCCCccEEEecC----------
Q 018248 91 ELS-FRSEVKNVRLRRDRIVVV----LNQKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAGPMVMACPG---------- 155 (359)
Q Consensus 91 ~~~-~~~~v~~~~~~~~~~~~~----~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g---------- 155 (359)
.+. ....+.+++|+|+|+.+. -+-.|.+|.+.+.+.. .++-....+...+|+++++...+++--
T Consensus 86 kIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~-~~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~ 164 (447)
T KOG4497|consen 86 KIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGY-LLPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISS 164 (447)
T ss_pred EeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeE-EecccccCceeEEECCCCceeeeeecccHHHHHHHHh
Confidence 888 778899999999997776 6789999999765543 334445556788999998875555420
Q ss_pred -----------------------CCCeeEEEEecCCeeeEEeecccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCc
Q 018248 156 -----------------------LLKGQVRVEDYGTKKSKYITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGS 212 (359)
Q Consensus 156 -----------------------~~d~~v~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~ 212 (359)
.++..+.+|+.-..-........-.+..++|+|.+++|++|+.|+. +++.+--+.+
T Consensus 165 c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~aYe~~lG~k~v~wsP~~qflavGsyD~~-lrvlnh~tWk 243 (447)
T KOG4497|consen 165 CKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAYERGLGLKFVEWSPCNQFLAVGSYDQM-LRVLNHFTWK 243 (447)
T ss_pred hHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhheeeeeeeccceeEEEeccccceEEeeccchh-hhhhceeeee
Confidence 0012222233222111111222357889999999999999999998 8875532111
Q ss_pred EE------------------------------------------------------------EEeec----CCCCcceEE
Q 018248 213 LL------------------------------------------------------------QEMRR----GAERAEIYS 228 (359)
Q Consensus 213 ~~------------------------------------------------------------~~~~~----~~~~~~i~~ 228 (359)
.. ..++. ......+.-
T Consensus 244 ~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~ 323 (447)
T KOG4497|consen 244 PFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGK 323 (447)
T ss_pred ehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccce
Confidence 10 00110 001235667
Q ss_pred EEecCCCCEEEEEcCC--CcEEEEEccCCCCCCCCCccccCCCCCccCCCCCceeeeeEeeeecceEEecccceeEEeec
Q 018248 229 LAFSSNAQWLAASSDK--GTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSAISSFRFIRGVLPKYFSSKWSMAQFRLP 306 (359)
Q Consensus 229 ~~~s~~~~~l~~~~~d--g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (359)
++||+|..++++-.+. +.+-+||++..+-.. .-..
T Consensus 324 lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~a-------------------------------------------vLiQ 360 (447)
T KOG4497|consen 324 LAFSCDSTYAATRNDKYPNALWLWDLQNLKLHA-------------------------------------------VLIQ 360 (447)
T ss_pred eeecCCceEEeeecCCCCceEEEEechhhhhhh-------------------------------------------hhhh
Confidence 8999999999987644 569999999866110 0012
Q ss_pred CCcEEEeeecccCCEEEEEecCCeEEEEEe
Q 018248 307 ENVQYLVGFGRQNNTIVIVGLDGSYYKCEF 336 (359)
Q Consensus 307 ~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~ 336 (359)
..+|....|.|....|+.+.....+|.|..
T Consensus 361 k~piraf~WdP~~prL~vctg~srLY~W~p 390 (447)
T KOG4497|consen 361 KHPIRAFEWDPGRPRLVVCTGKSRLYFWAP 390 (447)
T ss_pred ccceeEEEeCCCCceEEEEcCCceEEEEcC
Confidence 246788889998888888888888888864
No 179
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.79 E-value=3.5e-16 Score=131.99 Aligned_cols=238 Identities=11% Similarity=0.108 Sum_probs=157.8
Q ss_pred CCceEEEEEccCCCEEEEec--CCceEEEEcCC-CcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEE
Q 018248 6 PITIHHLALNQDHGCFATGT--ETGFRVYLSDP-YKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWD 82 (359)
Q Consensus 6 ~~~v~~~~~s~~g~~l~~~~--d~~i~iw~~~~-~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd 82 (359)
.+....++++|++++|+++. ++.|.+|+++. +......... ..+....+.++++++.++.+.. .++.|.+|+
T Consensus 34 ~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~--~~~~p~~i~~~~~g~~l~v~~~---~~~~v~v~~ 108 (330)
T PRK11028 34 PGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESP--LPGSPTHISTDHQGRFLFSASY---NANCVSVSP 108 (330)
T ss_pred CCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeec--CCCCceEEEECCCCCEEEEEEc---CCCeEEEEE
Confidence 35677899999999987765 78899999973 3322222221 2334567888888888877664 369999999
Q ss_pred CCCc----cEEeeeccCcceeEEEEecceeEEE----ecCeEEEEEcccceeee-------eEeccCCCceeeeeecCCC
Q 018248 83 DHEN----RYLGELSFRSEVKNVRLRRDRIVVV----LNQKVYVYNFTDLKLVD-------QIETVVNPTGLCDVSQNAG 147 (359)
Q Consensus 83 ~~~~----~~~~~~~~~~~v~~~~~~~~~~~~~----~d~~i~i~d~~~~~~~~-------~~~~~~~~~~~~~~~~~~~ 147 (359)
+.+. +.+..+........++++|++++++ .++.|.+||+.+...+. .... ......+.|+|+++
T Consensus 109 ~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~-g~~p~~~~~~pdg~ 187 (330)
T PRK11028 109 LDKDGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVE-GAGPRHMVFHPNQQ 187 (330)
T ss_pred ECCCCCCCCceeeccCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCC-CCCCceEEECCCCC
Confidence 8643 2233333344577889999997775 67999999996532221 1111 22345689999988
Q ss_pred ccEEEecCCCCeeEEEEecCC-----eeeEEeecc------cccccEEEEccCCcEEEEEeC-CCCeEEEEEcCCCc---
Q 018248 148 PMVMACPGLLKGQVRVEDYGT-----KKSKYITAH------ASRIASIAMTLDGRFVATASS-KGTLIRVFNTMDGS--- 212 (359)
Q Consensus 148 ~~~l~~~g~~d~~v~~~~~~~-----~~~~~~~~~------~~~i~~~~~s~~~~~l~~~~~-dg~~i~iwd~~~~~--- 212 (359)
.++++. ..++.|.+|+.+. ..+..+... ......+.++|++++|+++.. ++. |.+|++....
T Consensus 188 ~lyv~~--~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~-I~v~~i~~~~~~~ 264 (330)
T PRK11028 188 YAYCVN--ELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASL-ISVFSVSEDGSVL 264 (330)
T ss_pred EEEEEe--cCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCe-EEEEEEeCCCCeE
Confidence 755543 3478999977652 122222211 112336889999999999865 567 9999986433
Q ss_pred -EEEEeecCCCCcceEEEEecCCCCEEEEEcC-CCcEEEEEccCC
Q 018248 213 -LLQEMRRGAERAEIYSLAFSSNAQWLAASSD-KGTVHVFGLKVD 255 (359)
Q Consensus 213 -~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~-dg~i~iw~~~~~ 255 (359)
.+.....+ .....+.++|||++|++++. +++|.+|+++..
T Consensus 265 ~~~~~~~~~---~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~~~ 306 (330)
T PRK11028 265 SFEGHQPTE---TQPRGFNIDHSGKYLIAAGQKSHHISVYEIDGE 306 (330)
T ss_pred EEeEEEecc---ccCCceEECCCCCEEEEEEccCCcEEEEEEcCC
Confidence 22222221 24567899999999988775 889999998643
No 180
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.79 E-value=5.8e-17 Score=125.65 Aligned_cols=237 Identities=12% Similarity=0.099 Sum_probs=166.7
Q ss_pred eeEEEEeccCCEEEEEecCCCCCCeEEEEECCCc--------------cEEeeeccCcceeEEEEe-------cceeEEE
Q 018248 53 TQLVSMLFRSNIICLVNSGPHQSNKVMIWDDHEN--------------RYLGELSFRSEVKNVRLR-------RDRIVVV 111 (359)
Q Consensus 53 v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~--------------~~~~~~~~~~~v~~~~~~-------~~~~~~~ 111 (359)
.....|+|++..++..+ .|..+.+|++... .....+.....|..-+|- |+..+++
T Consensus 52 ~kgckWSPDGSciL~~s----edn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a 127 (406)
T KOG2919|consen 52 LKGCKWSPDGSCILSLS----EDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFA 127 (406)
T ss_pred hccceeCCCCceEEeec----ccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceee
Confidence 34567999999888888 7999999997431 111122245667777775 4555655
Q ss_pred ---ecCeEEEEEcccceeeeeEeccC-----CCceeeeeecCCCccEEEecCCCCeeEEEEec-C-Cee--eEEe-----
Q 018248 112 ---LNQKVYVYNFTDLKLVDQIETVV-----NPTGLCDVSQNAGPMVMACPGLLKGQVRVEDY-G-TKK--SKYI----- 174 (359)
Q Consensus 112 ---~d~~i~i~d~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~l~~~g~~d~~v~~~~~-~-~~~--~~~~----- 174 (359)
.+.-|++||.-+|+....+.... ....+++|+|++.. |.+ | ....|++++. + +.. ....
T Consensus 128 ~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeq--lfa-G-ykrcirvFdt~RpGr~c~vy~t~~~~k 203 (406)
T KOG2919|consen 128 VSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQ--LFA-G-YKRCIRVFDTSRPGRDCPVYTTVTKGK 203 (406)
T ss_pred eccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCe--Eee-c-ccceEEEeeccCCCCCCcchhhhhccc
Confidence 89999999999998776664422 12357899999987 444 4 5789999665 2 211 1111
Q ss_pred ecccccccEEEEccCC-cEEEEEeCCCCeEEEEEcCCCcEEEEeecCCCCcceEEEEecCCCCEEEEEcC-CCcEEEEEc
Q 018248 175 TAHASRIASIAMTLDG-RFVATASSKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSNAQWLAASSD-KGTVHVFGL 252 (359)
Q Consensus 175 ~~~~~~i~~~~~s~~~-~~l~~~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~-dg~i~iw~~ 252 (359)
.+..+-+.+++|+|-. +.++.++.... +-||.-....++..+-+ |.+.|+.+.|.++|+.|.+|.. |-.|..||+
T Consensus 204 ~gq~giisc~a~sP~~~~~~a~gsY~q~-~giy~~~~~~pl~llgg--h~gGvThL~~~edGn~lfsGaRk~dkIl~WDi 280 (406)
T KOG2919|consen 204 FGQKGIISCFAFSPMDSKTLAVGSYGQR-VGIYNDDGRRPLQLLGG--HGGGVTHLQWCEDGNKLFSGARKDDKILCWDI 280 (406)
T ss_pred ccccceeeeeeccCCCCcceeeecccce-eeeEecCCCCceeeecc--cCCCeeeEEeccCcCeecccccCCCeEEEEee
Confidence 2336678999999955 48999998888 88888778888887765 8899999999999999999874 567999999
Q ss_pred cCCCCCCCCCccccCCCCCccCCCCCceeeeeEeeeecceEEecccceeEEeecCCcEEEeeecccCCEEEEEecCCeEE
Q 018248 253 KVDSGSPGTSKLHSASEPNLSSKNSSAISSFRFIRGVLPKYFSSKWSMAQFRLPENVQYLVGFGRQNNTIVIVGLDGSYY 332 (359)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~ 332 (359)
+...... +. +.+. ....+...-....|+++.|++|+.||.|+
T Consensus 281 R~~~~pv-----------------------~~-----L~rh----------v~~TNQRI~FDld~~~~~LasG~tdG~V~ 322 (406)
T KOG2919|consen 281 RYSRDPV-----------------------YA-----LERH----------VGDTNQRILFDLDPKGEILASGDTDGSVR 322 (406)
T ss_pred hhccchh-----------------------hh-----hhhh----------ccCccceEEEecCCCCceeeccCCCccEE
Confidence 9765220 00 0000 00011122244578999999999999999
Q ss_pred EEEeCC
Q 018248 333 KCEFDP 338 (359)
Q Consensus 333 v~~~~~ 338 (359)
+|+++.
T Consensus 323 vwdlk~ 328 (406)
T KOG2919|consen 323 VWDLKD 328 (406)
T ss_pred EEecCC
Confidence 999875
No 181
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.79 E-value=3.2e-17 Score=145.34 Aligned_cols=285 Identities=14% Similarity=0.179 Sum_probs=188.9
Q ss_pred ceEEEEEccCCCEEEEec-CCceEEEEcCCCcceeeeeccc--CCCCceeEEEEeccCC--EEEEEecCCCCCCeEEEEE
Q 018248 8 TIHHLALNQDHGCFATGT-ETGFRVYLSDPYKPIMRRDFDR--NPRGGTQLVSMLFRSN--IICLVNSGPHQSNKVMIWD 82 (359)
Q Consensus 8 ~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~--~h~~~v~~~~~~~~~~--~~~~~~~~~~~d~~i~iwd 82 (359)
+-..+.|+|-...++++. ...|+|||.+.++.. ..|.. .....|+.+.+....+ .+++++ .||.|+||+
T Consensus 1066 ~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l--~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas----~dGvIRIwk 1139 (1387)
T KOG1517|consen 1066 PPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLL--NGFDNGAFPDTRVSDLELINEQDDALLLTAS----SDGVIRIWK 1139 (1387)
T ss_pred CCceeeecCCCceeEEcCCcceEEEEecccCcee--ccccCCCCCCCccceeeeecccchhheeeec----cCceEEEec
Confidence 456788999999999998 677999999876554 33321 1234566666654333 344444 689999997
Q ss_pred CCC-----ccEEeeec-cC-------cceeEEEEecce-eEEE--ecCeEEEEEcccceeeeeEeccCCCceeeeeecCC
Q 018248 83 DHE-----NRYLGELS-FR-------SEVKNVRLRRDR-IVVV--LNQKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNA 146 (359)
Q Consensus 83 ~~~-----~~~~~~~~-~~-------~~v~~~~~~~~~-~~~~--~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (359)
--. .+.+.... .. +.-.-+.|..+. .+++ .-..|+|||....+....+....+ ....+++++-
T Consensus 1140 ~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~-t~vTaLS~~~ 1218 (1387)
T KOG1517|consen 1140 DYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSS-TLVTALSADL 1218 (1387)
T ss_pred ccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCC-ccceeecccc
Confidence 322 22332221 11 111234565544 3444 356899999988877777754322 2234445443
Q ss_pred Cc-cEEEecCCCCeeEEEEecCCe----eeEEeeccccc--ccEEEEccCCc-EEEEEeCCCCeEEEEEcCCCcEEE--E
Q 018248 147 GP-MVMACPGLLKGQVRVEDYGTK----KSKYITAHASR--IASIAMTLDGR-FVATASSKGTLIRVFNTMDGSLLQ--E 216 (359)
Q Consensus 147 ~~-~~l~~~g~~d~~v~~~~~~~~----~~~~~~~~~~~--i~~~~~s~~~~-~l~~~~~dg~~i~iwd~~~~~~~~--~ 216 (359)
.. .++++ |..||.|++++.+.. .+...+.|... |..+.+.++|- .|++|+.+|. |++||++...... .
T Consensus 1219 ~~gn~i~A-GfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~-I~~~DlR~~~~e~~~~ 1296 (1387)
T KOG1517|consen 1219 VHGNIIAA-GFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGD-IQLLDLRMSSKETFLT 1296 (1387)
T ss_pred cCCceEEE-eecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCe-EEEEecccCcccccce
Confidence 22 34554 889999999888763 45667788877 99999998776 4999999999 9999998852221 2
Q ss_pred eecCCC-CcceEEEEecCCCCEEEEEcCCCcEEEEEccCCCCCCCCCccccCCCCCccCCCCCceeeeeEeeeecceEEe
Q 018248 217 MRRGAE-RAEIYSLAFSSNAQWLAASSDKGTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSAISSFRFIRGVLPKYFS 295 (359)
Q Consensus 217 ~~~~~~-~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (359)
+..+.. .+..+++..+++...+|+|+. +.|+||++....-.. ++ ..+.+.
T Consensus 1297 iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~G~~l~~--------------------------~k-~n~~F~- 1347 (1387)
T KOG1517|consen 1297 IVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLSGEQLNI--------------------------IK-YNPGFM- 1347 (1387)
T ss_pred eeeccccCccceeeeeccCCCeeeecCc-ceEEEEecChhhhcc--------------------------cc-cCcccc-
Confidence 222111 125899999999999999998 899999998765221 00 011111
Q ss_pred cccceeEEeecCCcEEEeeecccCCEEEEEecCCeEEEEEeCC
Q 018248 296 SKWSMAQFRLPENVQYLVGFGRQNNTIVIVGLDGSYYKCEFDP 338 (359)
Q Consensus 296 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~ 338 (359)
. -+.+.+.+++|+|-.-.|++|..|..|.||..+.
T Consensus 1348 ~--------q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~k 1382 (1387)
T KOG1517|consen 1348 G--------QRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCEK 1382 (1387)
T ss_pred c--------CcCCCcceeeecchhHhhhhccCCceEEEeecCC
Confidence 1 1236779999999988899999999999998765
No 182
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.79 E-value=1.1e-17 Score=127.60 Aligned_cols=197 Identities=9% Similarity=0.107 Sum_probs=151.8
Q ss_pred CCCCceEEEEEccCCCEEEEecCCceEEEEcCCCcceeee---ecccCCCCceeEEEEecc--CCEEEEEecCCCCCCeE
Q 018248 4 PDPITIHHLALNQDHGCFATGTETGFRVYLSDPYKPIMRR---DFDRNPRGGTQLVSMLFR--SNIICLVNSGPHQSNKV 78 (359)
Q Consensus 4 ~h~~~v~~~~~s~~g~~l~~~~d~~i~iw~~~~~~~~~~~---~~~~~h~~~v~~~~~~~~--~~~~~~~~~~~~~d~~i 78 (359)
++-+.|.|+.|.|++..+|+-.|+.|.+|+++....+... ....+|......-+|+|. ++.++.. .|+++
T Consensus 121 eavg~i~cvew~Pns~klasm~dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt-----~d~tl 195 (370)
T KOG1007|consen 121 EAVGKINCVEWEPNSDKLASMDDNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATT-----SDSTL 195 (370)
T ss_pred HHhCceeeEEEcCCCCeeEEeccCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEe-----CCCcE
Confidence 4556899999999999999999999999999876553111 111234555666678774 3444444 37999
Q ss_pred EEEECCCccEEeeec--cCcceeEEEEecceeEEE----ecCeEEEEEccc-ceeeeeEeccCCCceeeeeecCCCccEE
Q 018248 79 MIWDDHENRYLGELS--FRSEVKNVRLRRDRIVVV----LNQKVYVYNFTD-LKLVDQIETVVNPTGLCDVSQNAGPMVM 151 (359)
Q Consensus 79 ~iwd~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~----~d~~i~i~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l 151 (359)
..||+++.+....+. |...|.++.|+|+.+.++ .||.|++||.+. ..++..+.+|...++++.|+|..+.++|
T Consensus 196 ~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiL 275 (370)
T KOG1007|consen 196 QFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLIL 275 (370)
T ss_pred EEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEE
Confidence 999999988888887 889999999999987766 899999999954 5678889999999999999999887444
Q ss_pred EecCCCCeeEEEEecCC------------------------------eeeEEeecccccccEEEEccCCc-EEEEEeCCC
Q 018248 152 ACPGLLKGQVRVEDYGT------------------------------KKSKYITAHASRIASIAMTLDGR-FVATASSKG 200 (359)
Q Consensus 152 ~~~g~~d~~v~~~~~~~------------------------------~~~~~~~~~~~~i~~~~~s~~~~-~l~~~~~dg 200 (359)
+|+.|..|.++.... ..+.++..|...|.+++||.-.. .+|+-+.||
T Consensus 276 --s~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDG 353 (370)
T KOG1007|consen 276 --SGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDG 353 (370)
T ss_pred --ecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEeccCc
Confidence 366788888764321 12456778999999999997655 567889999
Q ss_pred CeEEEEEc
Q 018248 201 TLIRVFNT 208 (359)
Q Consensus 201 ~~i~iwd~ 208 (359)
. +.|=.+
T Consensus 354 R-viIs~V 360 (370)
T KOG1007|consen 354 R-VIISSV 360 (370)
T ss_pred e-EEeecC
Confidence 8 777554
No 183
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.78 E-value=1.5e-16 Score=121.60 Aligned_cols=241 Identities=11% Similarity=0.147 Sum_probs=172.1
Q ss_pred CCceEEEEEcc---CCCEEEEec-----CCceEEEEcC--CCcceeeeecccCCCCceeEEEEeccCCE---EEEEecCC
Q 018248 6 PITIHHLALNQ---DHGCFATGT-----ETGFRVYLSD--PYKPIMRRDFDRNPRGGTQLVSMLFRSNI---ICLVNSGP 72 (359)
Q Consensus 6 ~~~v~~~~~s~---~g~~l~~~~-----d~~i~iw~~~--~~~~~~~~~~~~~h~~~v~~~~~~~~~~~---~~~~~~~~ 72 (359)
+-+++++.|+. ...+||.|+ .+.|.|..++ +++......| .|..+++.+.|.|+... -++++
T Consensus 44 p~~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~f--d~~YP~tK~~wiPd~~g~~pdlLAT--- 118 (364)
T KOG0290|consen 44 PWPLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDANF--DHPYPVTKLMWIPDSKGVYPDLLAT--- 118 (364)
T ss_pred CCceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccCCC--CCCCCccceEecCCccccCcchhhc---
Confidence 34678899983 344788887 2567777665 4444544555 58899999999987642 23344
Q ss_pred CCCCeEEEEECCC--ccEE--eee------ccCcceeEEEEecce-eEEE---ecCeEEEEEcccce---eeeeEeccCC
Q 018248 73 HQSNKVMIWDDHE--NRYL--GEL------SFRSEVKNVRLRRDR-IVVV---LNQKVYVYNFTDLK---LVDQIETVVN 135 (359)
Q Consensus 73 ~~d~~i~iwd~~~--~~~~--~~~------~~~~~v~~~~~~~~~-~~~~---~d~~i~i~d~~~~~---~~~~~~~~~~ 135 (359)
.+..+++|.+.. .+.. ..+ .+..+++++.|+.-. +++. .|-+..|||++++. ....+-.|..
T Consensus 119 -s~D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDK 197 (364)
T KOG0290|consen 119 -SSDFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDK 197 (364)
T ss_pred -ccCeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEecCc
Confidence 247899999763 2211 111 256789999998754 3333 89999999998763 3566778999
Q ss_pred CceeeeeecCCCccEEEecCCCCeeEEEEecCCeeeEE-e---ecccccccEEEEccC-CcEEEEEeCCCCeEEEEEcCC
Q 018248 136 PTGLCDVSQNAGPMVMACPGLLKGQVRVEDYGTKKSKY-I---TAHASRIASIAMTLD-GRFVATASSKGTLIRVFNTMD 210 (359)
Q Consensus 136 ~~~~~~~~~~~~~~~l~~~g~~d~~v~~~~~~~~~~~~-~---~~~~~~i~~~~~s~~-~~~l~~~~~dg~~i~iwd~~~ 210 (359)
+|..++|...+.. ++|+ .+.||.+++++++...-.+ + .....+...++|+++ -+++|+-..|...|.|.|++.
T Consensus 198 EV~DIaf~~~s~~-~FAS-vgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~ 275 (364)
T KOG0290|consen 198 EVYDIAFLKGSRD-VFAS-VGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRV 275 (364)
T ss_pred ceeEEEeccCccc-eEEE-ecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecC
Confidence 9999999986554 4555 4469999997766532222 2 222457788899874 458888777765599999986
Q ss_pred -CcEEEEeecCCCCcceEEEEecCCC-CEEEEEcCCCcEEEEEccCCC
Q 018248 211 -GSLLQEMRRGAERAEIYSLAFSSNA-QWLAASSDKGTVHVFGLKVDS 256 (359)
Q Consensus 211 -~~~~~~~~~~~~~~~i~~~~~s~~~-~~l~~~~~dg~i~iw~~~~~~ 256 (359)
..++.++++ |.+.|+.++|.|.. ..|+++++|..+.|||+.+..
T Consensus 276 P~tpva~L~~--H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~ 321 (364)
T KOG0290|consen 276 PCTPVARLRN--HQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMP 321 (364)
T ss_pred CCcceehhhc--CcccccceEecCCCCceeeecCCcceEEEEeccccc
Confidence 456777877 88999999999954 589999999999999998765
No 184
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.78 E-value=8.1e-18 Score=138.74 Aligned_cols=205 Identities=11% Similarity=0.065 Sum_probs=164.1
Q ss_pred EEEEec-CCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEECCCccEEeeec-cCcc
Q 018248 20 CFATGT-ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDDHENRYLGELS-FRSE 97 (359)
Q Consensus 20 ~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~-~~~~ 97 (359)
.|+.++ ||.+.|.+-.. ...+... +|.+.+.+-.|++++..++.++ +||.|++|. ++|....++. ...+
T Consensus 77 ~~~i~s~DGkf~il~k~~---rVE~sv~-AH~~A~~~gRW~~dGtgLlt~G----EDG~iKiWS-rsGMLRStl~Q~~~~ 147 (737)
T KOG1524|consen 77 TLLICSNDGRFVILNKSA---RVERSIS-AHAAAISSGRWSPDGAGLLTAG----EDGVIKIWS-RSGMLRSTVVQNEES 147 (737)
T ss_pred eEEEEcCCceEEEecccc---hhhhhhh-hhhhhhhhcccCCCCceeeeec----CCceEEEEe-ccchHHHHHhhcCce
Confidence 455555 99999887552 2224444 7999999999999999999888 899999999 7777666665 7789
Q ss_pred eeEEEEecceeEEE--ecCeEEEEEcccceeeeeEeccCCCceeeeeecCCCccEEEecCCCCeeEEEEecCCeeeEEee
Q 018248 98 VKNVRLRRDRIVVV--LNQKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAGPMVMACPGLLKGQVRVEDYGTKKSKYIT 175 (359)
Q Consensus 98 v~~~~~~~~~~~~~--~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~v~~~~~~~~~~~~~~ 175 (359)
|.|++|.|+...++ ..+.+.|=.+.....+-..+.|.+-+-++.|++..+- +++ |++|-..++|+..+..+..-.
T Consensus 148 v~c~~W~p~S~~vl~c~g~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~l--I~s-gGED~kfKvWD~~G~~Lf~S~ 224 (737)
T KOG1524|consen 148 IRCARWAPNSNSIVFCQGGHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNI--IAS-GGEDFRFKIWDAQGANLFTSA 224 (737)
T ss_pred eEEEEECCCCCceEEecCCeEEEeecccccceeEEeccCcEEEEeecCccccc--eee-cCCceeEEeecccCcccccCC
Confidence 99999999876665 8888988888777677778889998888888877663 665 779999999999999999999
Q ss_pred cccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcEEEEeecCCCCcceEEEEecCCCCEEEEEcCCCcEEEEEc
Q 018248 176 AHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSNAQWLAASSDKGTVHVFGL 252 (359)
Q Consensus 176 ~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~ 252 (359)
.|..+|++++|+|+ +.++.++.. + ++ +... ..+.|..++||+||..+++|+..|.+.+=.+
T Consensus 225 ~~ey~ITSva~npd-~~~~v~S~n-t-~R------------~~~p-~~GSifnlsWS~DGTQ~a~gt~~G~v~~A~~ 285 (737)
T KOG1524|consen 225 AEEYAITSVAFNPE-KDYLLWSYN-T-AR------------FSSP-RVGSIFNLSWSADGTQATCGTSTGQLIVAYA 285 (737)
T ss_pred hhccceeeeeeccc-cceeeeeee-e-ee------------ecCC-CccceEEEEEcCCCceeeccccCceEEEeee
Confidence 99999999999999 666666654 2 44 2211 4578999999999999999999998766444
No 185
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.78 E-value=1.5e-16 Score=138.32 Aligned_cols=214 Identities=13% Similarity=0.079 Sum_probs=144.7
Q ss_pred CCeEEEEECCCccEEeeec-cCcceeEEEEecceeEEE---e---cCeEEEEEcccceeeeeEeccCCCceeeeeecCCC
Q 018248 75 SNKVMIWDDHENRYLGELS-FRSEVKNVRLRRDRIVVV---L---NQKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAG 147 (359)
Q Consensus 75 d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~---~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (359)
+..|.+||..... .+.+. +...+....|+|+|+.++ . +..|++||+.+++... +..........+|+|+++
T Consensus 183 ~~~i~i~d~dg~~-~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~-l~~~~g~~~~~~wSPDG~ 260 (429)
T PRK01742 183 PYEVRVADYDGFN-QFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKV-VASFRGHNGAPAFSPDGS 260 (429)
T ss_pred eEEEEEECCCCCC-ceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEE-EecCCCccCceeECCCCC
Confidence 5799999976555 34444 777899999999998887 2 2479999998775422 222222334689999988
Q ss_pred ccEEEecCCCCeeEEE--EecCCeeeEEeecccccccEEEEccCCcEEEEEe-CCCCeEEEEEcCCC-cEEEEeecCCCC
Q 018248 148 PMVMACPGLLKGQVRV--EDYGTKKSKYITAHASRIASIAMTLDGRFVATAS-SKGTLIRVFNTMDG-SLLQEMRRGAER 223 (359)
Q Consensus 148 ~~~l~~~g~~d~~v~~--~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~dg~~i~iwd~~~~-~~~~~~~~~~~~ 223 (359)
.++++ ...+|.+.| ++..+.....+..+...+..+.|+|||+.|+.++ .++. ..||++... .....+ . +.
T Consensus 261 ~La~~--~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~-~~I~~~~~~~~~~~~l-~--~~ 334 (429)
T PRK01742 261 RLAFA--SSKDGVLNIYVMGANGGTPSQLTSGAGNNTEPSWSPDGQSILFTSDRSGS-PQVYRMSASGGGASLV-G--GR 334 (429)
T ss_pred EEEEE--EecCCcEEEEEEECCCCCeEeeccCCCCcCCEEECCCCCEEEEEECCCCC-ceEEEEECCCCCeEEe-c--CC
Confidence 74433 335666555 5556666677777777888999999999877655 5677 888876432 222223 2 22
Q ss_pred cceEEEEecCCCCEEEEEcCCCcEEEEEccCCCCCCCCCccccCCCCCccCCCCCceeeeeEeeeecceEEecccceeEE
Q 018248 224 AEIYSLAFSSNAQWLAASSDKGTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSAISSFRFIRGVLPKYFSSKWSMAQF 303 (359)
Q Consensus 224 ~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (359)
. ....|+|||++|+..+.++ +.+||+.++.... ....
T Consensus 335 ~--~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~----------------------------------lt~~------ 371 (429)
T PRK01742 335 G--YSAQISADGKTLVMINGDN-VVKQDLTSGSTEV----------------------------------LSST------ 371 (429)
T ss_pred C--CCccCCCCCCEEEEEcCCC-EEEEECCCCCeEE----------------------------------ecCC------
Confidence 2 4578999999998887765 6669998765210 0000
Q ss_pred eecCCcEEEeeecccCCEEEEEecCCeEEEEEeCCCCCCc
Q 018248 304 RLPENVQYLVGFGRQNNTIVIVGLDGSYYKCEFDPMKGGE 343 (359)
Q Consensus 304 ~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~ 343 (359)
.....++|+|||+.|+.++.+|...+|.+...+|..
T Consensus 372 ----~~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~ 407 (429)
T PRK01742 372 ----FLDESPSISPNGIMIIYSSTQGLGKVLQLVSADGRF 407 (429)
T ss_pred ----CCCCCceECCCCCEEEEEEcCCCceEEEEEECCCCc
Confidence 011347899999999999999998888765443433
No 186
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.78 E-value=6.2e-16 Score=134.82 Aligned_cols=284 Identities=14% Similarity=0.156 Sum_probs=197.2
Q ss_pred EEEccCCCEEEEecCCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCC---EEEEEecCCCCCCeEEEEECCCccE
Q 018248 12 LALNQDHGCFATGTETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSN---IICLVNSGPHQSNKVMIWDDHENRY 88 (359)
Q Consensus 12 ~~~s~~g~~l~~~~d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~---~~~~~~~~~~~d~~i~iwd~~~~~~ 88 (359)
-.||+|+++++...+..|.||...+++.. ..+. +|..++..+.+.+... ++...+ .+|.|++||...+.+
T Consensus 22 avfSnD~k~l~~~~~~~V~VyS~~Tg~~i--~~l~-~~~a~l~s~~~~~~~~~~~~~~~~s----l~G~I~vwd~~~~~L 94 (792)
T KOG1963|consen 22 AVFSNDAKFLFLCTGNFVKVYSTATGECI--TSLE-DHTAPLTSVIVLPSSENANYLIVCS----LDGTIRVWDWSDGEL 94 (792)
T ss_pred cccccCCcEEEEeeCCEEEEEecchHhhh--hhcc-cccCccceeeecCCCccceEEEEEe----cCccEEEecCCCcEE
Confidence 46899999999999999999999988766 3554 7899999888887765 233444 689999999888877
Q ss_pred EeeeccCcceeEE-----------------------------------------------------------EEecceeE
Q 018248 89 LGELSFRSEVKNV-----------------------------------------------------------RLRRDRIV 109 (359)
Q Consensus 89 ~~~~~~~~~v~~~-----------------------------------------------------------~~~~~~~~ 109 (359)
+..+....++..+ ..++.+.+
T Consensus 95 lkt~~~~~~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~~~~ge~ 174 (792)
T KOG1963|consen 95 LKTFDNNLPVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVDNNSGEF 174 (792)
T ss_pred EEEEecCCceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccEEEcCCceE
Confidence 7766422222222 22222222
Q ss_pred EE--ecCeEEEEEcccceeeee-E---eccCCCceeeeeecCCCccEEEecCCCCeeEEEEecCC-----eeeEEeeccc
Q 018248 110 VV--LNQKVYVYNFTDLKLVDQ-I---ETVVNPTGLCDVSQNAGPMVMACPGLLKGQVRVEDYGT-----KKSKYITAHA 178 (359)
Q Consensus 110 ~~--~d~~i~i~d~~~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~v~~~~~~~-----~~~~~~~~~~ 178 (359)
.. .+..+.+|+......... . ..|.-.+.+.+++|.++. +|+ |..||.|.+|..-+ ...+.+.-|.
T Consensus 175 ~~i~~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~--~Aa-~d~dGrI~vw~d~~~~~~~~t~t~lHWH~ 251 (792)
T KOG1963|consen 175 KGIVHMCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERY--LAA-GDSDGRILVWRDFGSSDDSETCTLLHWHH 251 (792)
T ss_pred EEEEEeeeEEEEEecccceeeccchhhhhhcccceeEEeccccce--EEE-eccCCcEEEEeccccccccccceEEEecc
Confidence 22 455666777654331100 0 123334577888888764 666 77899999987554 3456677899
Q ss_pred ccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcEEEEeecCCCCcceEEEEecCCCCEEEEEcCCCcEEEEEccCCCCC
Q 018248 179 SRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSNAQWLAASSDKGTVHVFGLKVDSGS 258 (359)
Q Consensus 179 ~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~ 258 (359)
..|++++|+++|.+|++|+..+. +.+|.+.+++. +-++. -.++|..+.+|||+.+.+....|+.|.+-...+.+..
T Consensus 252 ~~V~~L~fS~~G~~LlSGG~E~V-Lv~Wq~~T~~k-qfLPR--Lgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k 327 (792)
T KOG1963|consen 252 DEVNSLSFSSDGAYLLSGGREGV-LVLWQLETGKK-QFLPR--LGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIK 327 (792)
T ss_pred cccceeEEecCCceEeecccceE-EEEEeecCCCc-ccccc--cCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhh
Confidence 99999999999999999999999 99999999883 22332 4579999999999999999999999999888654421
Q ss_pred CCCCccccCCCCCccCCCCCceeeeeEeeeecceEEecccceeEEeecCCcEEEeeecccCCEEEEEecCCeEEEEEeCC
Q 018248 259 PGTSKLHSASEPNLSSKNSSAISSFRFIRGVLPKYFSSKWSMAQFRLPENVQYLVGFGRQNNTIVIVGLDGSYYKCEFDP 338 (359)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~ 338 (359)
.. +.+..+. .+.. -+.+.+-.+.++++|-.+.++-.+..|.|..|++-.
T Consensus 328 ~t-------------------------Isgi~~~--~~~~----k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~t 376 (792)
T KOG1963|consen 328 ST-------------------------ISGIKPP--TPST----KTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYT 376 (792)
T ss_pred hh-------------------------ccCccCC--Cccc----cccccccceeEEEcCCCCceeecCCCceEEEEeccc
Confidence 10 0010000 0000 011224456788888778888889999999998876
Q ss_pred CC
Q 018248 339 MK 340 (359)
Q Consensus 339 ~~ 340 (359)
+.
T Consensus 377 d~ 378 (792)
T KOG1963|consen 377 DS 378 (792)
T ss_pred cc
Confidence 54
No 187
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.78 E-value=4.1e-18 Score=141.14 Aligned_cols=244 Identities=15% Similarity=0.175 Sum_probs=172.0
Q ss_pred CCCCceEEEEEccCCCEEEEec-CCceEEEEcCC------CcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCC
Q 018248 4 PDPITIHHLALNQDHGCFATGT-ETGFRVYLSDP------YKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSN 76 (359)
Q Consensus 4 ~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~------~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~ 76 (359)
.|.+.|..++|.|-...|++++ |+.+++|+++. .......+|+ +|.++|-++++..++..++.++ .||
T Consensus 292 s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfr-aH~gPVl~v~v~~n~~~~ysgg----~Dg 366 (577)
T KOG0642|consen 292 SHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFR-AHEGPVLCVVVPSNGEHCYSGG----IDG 366 (577)
T ss_pred cchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEe-cccCceEEEEecCCceEEEeec----cCc
Confidence 5778899999999999999999 99999999932 1223345666 9999999999988888777666 799
Q ss_pred eEEEEECCCc----------cEEeeec-cCcceeEEEEecceeEEE---ecCeEEEEEcccceeeeeEeccCCCceeeee
Q 018248 77 KVMIWDDHEN----------RYLGELS-FRSEVKNVRLRRDRIVVV---LNQKVYVYNFTDLKLVDQIETVVNPTGLCDV 142 (359)
Q Consensus 77 ~i~iwd~~~~----------~~~~~~~-~~~~v~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~ 142 (359)
+|+.|++... .....+. |.+.|+.+++++....++ .||+++.|+.....+ .++........-+.+
T Consensus 367 ~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~Plsv 445 (577)
T KOG0642|consen 367 TIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYPLSV 445 (577)
T ss_pred eeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCc-cccCCccccCCcceE
Confidence 9999965421 1222333 889999999998776666 799999999855544 333222221111222
Q ss_pred ecCCCccEEEecCCCCeeEEEEecCC-eeeEEeec-------ccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcEE
Q 018248 143 SQNAGPMVMACPGLLKGQVRVEDYGT-KKSKYITA-------HASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLL 214 (359)
Q Consensus 143 ~~~~~~~~l~~~g~~d~~v~~~~~~~-~~~~~~~~-------~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~~ 214 (359)
..-.......++...-+.-.+++... ..++.+.. ....+..+.++|.+.+.+++..|+. |+++|..+++++
T Consensus 446 d~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~-Ir~~dn~~~~~l 524 (577)
T KOG0642|consen 446 DRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRS-IRFFDNKTGKIL 524 (577)
T ss_pred eeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCc-eecccccccccc
Confidence 22211111111111111111122221 22222211 1245788899999999999999999 999999999999
Q ss_pred EEeecCCCCcceEEEEecCCCCEEEEEcCCCcEEEEEccCCC
Q 018248 215 QEMRRGAERAEIYSLAFSSNAQWLAASSDKGTVHVFGLKVDS 256 (359)
Q Consensus 215 ~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~ 256 (359)
..... |...++++++.|+|-+|++++.|+.+++|.+....
T Consensus 525 ~s~~a--~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k~ 564 (577)
T KOG0642|consen 525 HSMVA--HKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKT 564 (577)
T ss_pred hheee--ccceecceeecCCCceEEeecCCceeehhhccchh
Confidence 98887 77899999999999999999999999999998765
No 188
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.77 E-value=2.2e-16 Score=125.53 Aligned_cols=234 Identities=14% Similarity=0.185 Sum_probs=164.4
Q ss_pred cCCEEEEEecCCCCCCeEEEEEC-CCccEEeee---c-cCcceeEEEEecce-eEEE---ecCeEEEEEcccc-------
Q 018248 61 RSNIICLVNSGPHQSNKVMIWDD-HENRYLGEL---S-FRSEVKNVRLRRDR-IVVV---LNQKVYVYNFTDL------- 124 (359)
Q Consensus 61 ~~~~~~~~~~~~~~d~~i~iwd~-~~~~~~~~~---~-~~~~v~~~~~~~~~-~~~~---~d~~i~i~d~~~~------- 124 (359)
++.++++...+. ..|...+.-+ ++|+.-..+ . |.++|.+++|+|-+ ..++ .|.+|.||++..+
T Consensus 43 NPkfiAvi~eas-gGgaf~ViPl~k~Gr~d~~~P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~lt 121 (472)
T KOG0303|consen 43 NPKFVAVIIEAS-GGGAFLVIPLVKTGRMDASYPLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLT 121 (472)
T ss_pred CCceEEEEEecC-CCcceeecccccccccCCCCCCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcc
Confidence 345555543322 1234444432 344443333 2 88999999999954 5555 8999999999543
Q ss_pred eeeeeEeccCCCceeeeeecCCCccEEEecCCCCeeEEEEecCCee-eEEeecccccccEEEEccCCcEEEEEeCCCCeE
Q 018248 125 KLVDQIETVVNPTGLCDVSQNAGPMVMACPGLLKGQVRVEDYGTKK-SKYITAHASRIASIAMTLDGRFVATASSKGTLI 203 (359)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~v~~~~~~~~~-~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~~i 203 (359)
+++..+.+|...+..++|+|...++++.+ | .|..|.+|+..... +..+. |...|.++.|+.||.+|++.+.|.. |
T Consensus 122 epvv~L~gH~rrVg~V~wHPtA~NVLlsa-g-~Dn~v~iWnv~tgeali~l~-hpd~i~S~sfn~dGs~l~TtckDKk-v 197 (472)
T KOG0303|consen 122 EPVVELYGHQRRVGLVQWHPTAPNVLLSA-G-SDNTVSIWNVGTGEALITLD-HPDMVYSMSFNRDGSLLCTTCKDKK-V 197 (472)
T ss_pred cceEEEeecceeEEEEeecccchhhHhhc-c-CCceEEEEeccCCceeeecC-CCCeEEEEEeccCCceeeeecccce-e
Confidence 45677889999999999999988754443 4 59999999987644 44444 9999999999999999999999999 9
Q ss_pred EEEEcCCCcEEEEeecCCCCcceEEEEecCCCCEEEEEc---CCCcEEEEEccCCCCCCCCCccccCCCCCccCCCCCce
Q 018248 204 RVFNTMDGSLLQEMRRGAERAEIYSLAFSSNAQWLAASS---DKGTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSAI 280 (359)
Q Consensus 204 ~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~---~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (359)
+|||.++++.+.+-..| ....-..+.|-.+|.++.||- .+..+-+||..+-+..-
T Consensus 198 Rv~dpr~~~~v~e~~~h-eG~k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~eP~--------------------- 255 (472)
T KOG0303|consen 198 RVIDPRRGTVVSEGVAH-EGAKPARAIFLASGKIFTTGFSRMSERQIALWDPNNLEEPI--------------------- 255 (472)
T ss_pred EEEcCCCCcEeeecccc-cCCCcceeEEeccCceeeeccccccccceeccCcccccCcc---------------------
Confidence 99999999999888653 233556677888898555543 46789999988755220
Q ss_pred eeeeEeeeecceEEecccceeEEeecCCcEEEeeecccCCEEEEEec-CCeEEEEEeCCCC
Q 018248 281 SSFRFIRGVLPKYFSSKWSMAQFRLPENVQYLVGFGRQNNTIVIVGL-DGSYYKCEFDPMK 340 (359)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-dg~i~v~~~~~~~ 340 (359)
.+. .+... +-|.---|.+|.+.|+.+|. ||.|+-|.+..+.
T Consensus 256 ------------~~~------elDtS-nGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~ 297 (472)
T KOG0303|consen 256 ------------ALQ------ELDTS-NGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEP 297 (472)
T ss_pred ------------eeE------EeccC-CceEEeeecCCCCEEEEEecCCcceEEEEecCCC
Confidence 000 01111 12333456788888887776 9999999998753
No 189
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.77 E-value=9.8e-16 Score=133.58 Aligned_cols=293 Identities=12% Similarity=0.136 Sum_probs=193.0
Q ss_pred CCCCceEEEEEccCCCEEEEec-CCceEEEEcCC-Ccceee-eecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEE
Q 018248 4 PDPITIHHLALNQDHGCFATGT-ETGFRVYLSDP-YKPIMR-RDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMI 80 (359)
Q Consensus 4 ~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~-~~~~~~-~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~i 80 (359)
.|.-.++|.++||+++++|+|. ||.|.+|.--. ...... ..+. =|..+|.+++|+.++.+++..+ ..+.+.+
T Consensus 203 ~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lH-WH~~~V~~L~fS~~G~~LlSGG----~E~VLv~ 277 (792)
T KOG1963|consen 203 HHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLH-WHHDEVNSLSFSSDGAYLLSGG----REGVLVL 277 (792)
T ss_pred hhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEE-ecccccceeEEecCCceEeecc----cceEEEE
Confidence 4666689999999999999999 99999997532 111111 1221 3678999999999888877655 6799999
Q ss_pred EECCCccEEeeeccCcceeEEEEecceeEEE---ecCeEEEEEcccceeeeeEeccC-----------CCceeeeeecCC
Q 018248 81 WDDHENRYLGELSFRSEVKNVRLRRDRIVVV---LNQKVYVYNFTDLKLVDQIETVV-----------NPTGLCDVSQNA 146 (359)
Q Consensus 81 wd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~~~~-----------~~~~~~~~~~~~ 146 (359)
|.+.+++...--+..++|..+.++||+.+.+ .|+.|.+....+......+.+.. .-...+++.|..
T Consensus 278 Wq~~T~~kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~ 357 (792)
T KOG1963|consen 278 WQLETGKKQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRT 357 (792)
T ss_pred EeecCCCcccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCC
Confidence 9999998333333889999999999997766 99999999887666555544322 223456777744
Q ss_pred CccEEEecCCCCeeEEEEecCC-eeeEEee-----------cccccccEEEEccCCcEEEEEeC--------CCC-eEEE
Q 018248 147 GPMVMACPGLLKGQVRVEDYGT-KKSKYIT-----------AHASRIASIAMTLDGRFVATASS--------KGT-LIRV 205 (359)
Q Consensus 147 ~~~~l~~~g~~d~~v~~~~~~~-~~~~~~~-----------~~~~~i~~~~~s~~~~~l~~~~~--------dg~-~i~i 205 (359)
+. ++. ....|.|.+++... ..+..+. .+.-.++.++.+..|.+++|.-. ||. .+++
T Consensus 358 ~~--~vl-n~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKF 434 (792)
T KOG1963|consen 358 NS--LVL-NGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKF 434 (792)
T ss_pred Cc--eee-cCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEE
Confidence 43 333 33688999966543 2222221 12335778888888999998742 222 2788
Q ss_pred EEcCCCc----EEEEeecCCCCcceEEEEec-CCCC-EEEEEcCCCcEEEEEccCCCCCCCCCccccCCCCCccCCCCCc
Q 018248 206 FNTMDGS----LLQEMRRGAERAEIYSLAFS-SNAQ-WLAASSDKGTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSA 279 (359)
Q Consensus 206 wd~~~~~----~~~~~~~~~~~~~i~~~~~s-~~~~-~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (359)
|-..... +...+... |...+...++. +... .+++++.||.++||-+...+.... .
T Consensus 435 W~~n~~~kt~~L~T~I~~P-H~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k------------------~ 495 (792)
T KOG1963|consen 435 WQYNPNSKTFILNTKINNP-HGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYK------------------K 495 (792)
T ss_pred EEEcCCcceeEEEEEEecC-CCceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCc------------------C
Confidence 9654332 22233322 44444444443 4333 889999999999999976553311 0
Q ss_pred eeeeeEeeeecceEEecccceeEEeecCCcEEEeeecccCCEEEEEecCCeEEEEEeCC
Q 018248 280 ISSFRFIRGVLPKYFSSKWSMAQFRLPENVQYLVGFGRQNNTIVIVGLDGSYYKCEFDP 338 (359)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~ 338 (359)
...+.... + -..+..++.+++|+.|| .+++.+.|++|.+|+.+.
T Consensus 496 ~s~W~c~~------------i--~sy~k~~i~a~~fs~dG-slla~s~~~~Itiwd~~~ 539 (792)
T KOG1963|consen 496 SSNWTCKA------------I--GSYHKTPITALCFSQDG-SLLAVSFDDTITIWDYDT 539 (792)
T ss_pred ccceEEee------------e--eccccCcccchhhcCCC-cEEEEecCCEEEEecCCC
Confidence 00000000 0 01234567889999998 556678888999998876
No 190
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.77 E-value=1.3e-15 Score=120.26 Aligned_cols=214 Identities=15% Similarity=0.239 Sum_probs=148.9
Q ss_pred CeEEEEECCCccE-EeeeccCcceeEEEEecceeEEE---ecCeEEEEEcccceeeeeEeccCCCceeeeeecCCCccEE
Q 018248 76 NKVMIWDDHENRY-LGELSFRSEVKNVRLRRDRIVVV---LNQKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAGPMVM 151 (359)
Q Consensus 76 ~~i~iwd~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 151 (359)
...+++....... -........|..+-|+..-..++ ..+.+++++++....+..+.- ..++ +++--+.+.+++
T Consensus 26 ~Gyk~~~~~~~~k~~~~~~~~~~IvEmLFSSSLvaiV~~~qpr~Lkv~~~Kk~~~ICe~~f-pt~I--L~VrmNr~RLvV 102 (391)
T KOG2110|consen 26 DGYKIFSCSPFEKCFSKDTEGVSIVEMLFSSSLVAIVSIKQPRKLKVVHFKKKTTICEIFF-PTSI--LAVRMNRKRLVV 102 (391)
T ss_pred CceeEEecCchHHhhcccCCCeEEEEeecccceeEEEecCCCceEEEEEcccCceEEEEec-CCce--EEEEEccceEEE
Confidence 4456676554332 11112344566666766655555 345789999887777776653 3334 444444444333
Q ss_pred EecCCCCeeEEEEecC-CeeeEEee---cccccccEEEEccCCcEEEEEe--CCCCeEEEEEcCCCcEEEEeecCCCCcc
Q 018248 152 ACPGLLKGQVRVEDYG-TKKSKYIT---AHASRIASIAMTLDGRFVATAS--SKGTLIRVFNTMDGSLLQEMRRGAERAE 225 (359)
Q Consensus 152 ~~~g~~d~~v~~~~~~-~~~~~~~~---~~~~~i~~~~~s~~~~~l~~~~--~dg~~i~iwd~~~~~~~~~~~~~~~~~~ 225 (359)
+. ...|+|++.+ .+.+.++. .+...+.++++++.+.+||.-+ ..|. |.+||..+-+.+..+.. |.+.
T Consensus 103 ~L----ee~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~Gd-V~l~d~~nl~~v~~I~a--H~~~ 175 (391)
T KOG2110|consen 103 CL----EESIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGD-VVLFDTINLQPVNTINA--HKGP 175 (391)
T ss_pred EE----cccEEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCce-EEEEEcccceeeeEEEe--cCCc
Confidence 32 4569996655 45555553 3445566666666777888643 4577 99999999999999986 8899
Q ss_pred eEEEEecCCCCEEEEEcCCCc-EEEEEccCCCCCCCCCccccCCCCCccCCCCCceeeeeEeeeecceEEecccceeEEe
Q 018248 226 IYSLAFSSNAQWLAASSDKGT-VHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSAISSFRFIRGVLPKYFSSKWSMAQFR 304 (359)
Q Consensus 226 i~~~~~s~~~~~l~~~~~dg~-i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (359)
+-+++|+++|.+|||+++.|+ ||||.+.+++.. ..|-++..
T Consensus 176 lAalafs~~G~llATASeKGTVIRVf~v~~G~kl------------------------~eFRRG~~-------------- 217 (391)
T KOG2110|consen 176 LAALAFSPDGTLLATASEKGTVIRVFSVPEGQKL------------------------YEFRRGTY-------------- 217 (391)
T ss_pred eeEEEECCCCCEEEEeccCceEEEEEEcCCccEe------------------------eeeeCCce--------------
Confidence 999999999999999999998 899999988733 12222211
Q ss_pred ecCCcEEEeeecccCCEEEEEecCCeEEEEEeCCC
Q 018248 305 LPENVQYLVGFGRQNNTIVIVGLDGSYYKCEFDPM 339 (359)
Q Consensus 305 ~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~~ 339 (359)
.-.|.+++|+||+++|++.+..++|++|+++..
T Consensus 218 --~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~~ 250 (391)
T KOG2110|consen 218 --PVSIYSLSFSPDSQFLAASSNTETVHIFKLEKV 250 (391)
T ss_pred --eeEEEEEEECCCCCeEEEecCCCeEEEEEeccc
Confidence 236789999999999999999999999999865
No 191
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.77 E-value=2.2e-16 Score=137.29 Aligned_cols=211 Identities=13% Similarity=0.057 Sum_probs=144.8
Q ss_pred CceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEECCCccEEeeeccCcceeEEEEecc
Q 018248 27 TGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDDHENRYLGELSFRSEVKNVRLRRD 106 (359)
Q Consensus 27 ~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~ 106 (359)
..|.+||.+..... .+. .|...+....|+|+++.+++++... .+..|++||+.+++........+....++|+||
T Consensus 184 ~~i~i~d~dg~~~~---~lt-~~~~~v~~p~wSPDG~~la~~s~~~-~~~~i~i~dl~tg~~~~l~~~~g~~~~~~wSPD 258 (429)
T PRK01742 184 YEVRVADYDGFNQF---IVN-RSSQPLMSPAWSPDGSKLAYVSFEN-KKSQLVVHDLRSGARKVVASFRGHNGAPAFSPD 258 (429)
T ss_pred EEEEEECCCCCCce---Eec-cCCCccccceEcCCCCEEEEEEecC-CCcEEEEEeCCCCceEEEecCCCccCceeECCC
Confidence 57899998754432 222 4567788999999999999887543 346899999988765433333444557899999
Q ss_pred eeEEE----ecCeE--EEEEcccceeeeeEeccCCCceeeeeecCCCccEEEecCCCCeeEEEEecC--CeeeEEeeccc
Q 018248 107 RIVVV----LNQKV--YVYNFTDLKLVDQIETVVNPTGLCDVSQNAGPMVMACPGLLKGQVRVEDYG--TKKSKYITAHA 178 (359)
Q Consensus 107 ~~~~~----~d~~i--~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~v~~~~~~--~~~~~~~~~~~ 178 (359)
|..++ .++.+ ++||+.+++ ...+..+...+....|+|+++.++++ +..++...+|..+ +.....+ .+.
T Consensus 259 G~~La~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~i~f~--s~~~g~~~I~~~~~~~~~~~~l-~~~ 334 (429)
T PRK01742 259 GSRLAFASSKDGVLNIYVMGANGGT-PSQLTSGAGNNTEPSWSPDGQSILFT--SDRSGSPQVYRMSASGGGASLV-GGR 334 (429)
T ss_pred CCEEEEEEecCCcEEEEEEECCCCC-eEeeccCCCCcCCEEECCCCCEEEEE--ECCCCCceEEEEECCCCCeEEe-cCC
Confidence 98776 36654 455665554 34455555566778999998874443 3356677776543 3333333 333
Q ss_pred ccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcEEEEeecCCCCcceEEEEecCCCCEEEEEcCCCcEEEEEccC
Q 018248 179 SRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSNAQWLAASSDKGTVHVFGLKV 254 (359)
Q Consensus 179 ~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~ 254 (359)
. ....|+|||++|+..+.++ +.+||+.+++....... . ...++.|+|||++|+.++.++.+.+|.+..
T Consensus 335 ~--~~~~~SpDG~~ia~~~~~~--i~~~Dl~~g~~~~lt~~--~--~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~ 402 (429)
T PRK01742 335 G--YSAQISADGKTLVMINGDN--VVKQDLTSGSTEVLSST--F--LDESPSISPNGIMIIYSSTQGLGKVLQLVS 402 (429)
T ss_pred C--CCccCCCCCCEEEEEcCCC--EEEEECCCCCeEEecCC--C--CCCCceECCCCCEEEEEEcCCCceEEEEEE
Confidence 3 4678999999998887765 67799988876533322 1 235678999999999999999888888753
No 192
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.77 E-value=1.7e-14 Score=126.43 Aligned_cols=313 Identities=17% Similarity=0.279 Sum_probs=212.6
Q ss_pred ceEEEEE-ccCCC-EEEE-ec-CCceEEEEcCC-CcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEE
Q 018248 8 TIHHLAL-NQDHG-CFAT-GT-ETGFRVYLSDP-YKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWD 82 (359)
Q Consensus 8 ~v~~~~~-s~~g~-~l~~-~~-d~~i~iw~~~~-~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd 82 (359)
.+..+.+ ++++. .++. +. |+.+.+|+... .... ..+. +|...+..+++.+++..++..+. .|+.+++|+
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~--~~~~-~~~~~v~~~~~~~~~~~~~~~~~---~~~~~~~~~ 184 (466)
T COG2319 111 SVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLI--RTLE-GHSESVTSLAFSPDGKLLASGSS---LDGTIKLWD 184 (466)
T ss_pred ceeeEEEECCCcceEEeccCCCCccEEEEEecCCCeEE--EEEe-cCcccEEEEEECCCCCEEEecCC---CCCceEEEE
Confidence 5667777 88888 4444 34 88999999986 3333 2232 68899999999988885554431 289999999
Q ss_pred CCCccEEeeec-cCcceeEEEEeccee-EEE---ecCeEEEEEcccceeee-eEeccCCCceeeeeecCCCccEEEecCC
Q 018248 83 DHENRYLGELS-FRSEVKNVRLRRDRI-VVV---LNQKVYVYNFTDLKLVD-QIETVVNPTGLCDVSQNAGPMVMACPGL 156 (359)
Q Consensus 83 ~~~~~~~~~~~-~~~~v~~~~~~~~~~-~~~---~d~~i~i~d~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~g~ 156 (359)
+.++..+..+. |...|.+++|+|++. .++ .|+.|++||...+..+. .+..+.... ...+++++. ++++ ++
T Consensus 185 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~--~~~~-~~ 260 (466)
T COG2319 185 LRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGS--LLAS-GS 260 (466)
T ss_pred cCCCceEEeeccCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCC--EEEE-ec
Confidence 99888888887 899999999999986 444 78999999988777777 577776664 447888883 3444 66
Q ss_pred CCeeEEEEecCCee--eEEeecccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcEEEEeecCCCCcceEEEEecCC
Q 018248 157 LKGQVRVEDYGTKK--SKYITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSN 234 (359)
Q Consensus 157 ~d~~v~~~~~~~~~--~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~ 234 (359)
.++.+++|+..... ...+..|...+.++.|+|++..+++++.|+. +.+||..+...........|...+..+.|.++
T Consensus 261 ~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (466)
T COG2319 261 SDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGT-VRLWDLETGKLLSSLTLKGHEGPVSSLSFSPD 339 (466)
T ss_pred CCCcEEEeeecCCCcEEEEEecCCccEEEEEECCCCCEEEEeeCCCc-EEEEEcCCCceEEEeeecccCCceEEEEECCC
Confidence 89999998876433 3444678899999999998888888999988 99999988877666651125557899999434
Q ss_pred CCEEEEE-cCCCcEEEEEccCCCCCCCC--Cc-cccCCCCCccCCCCCc-eeeeeEeeeecceEEecccceeEEeecC--
Q 018248 235 AQWLAAS-SDKGTVHVFGLKVDSGSPGT--SK-LHSASEPNLSSKNSSA-ISSFRFIRGVLPKYFSSKWSMAQFRLPE-- 307 (359)
Q Consensus 235 ~~~l~~~-~~dg~i~iw~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 307 (359)
+..++.+ ..|+.+.+|++......... .. .....+.+ . ..... ...-. ....+.............
T Consensus 340 ~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~ 412 (466)
T COG2319 340 GSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHSNVLSVSFSP-D-GRVVSSGSTDG-----TVRLWDLSTGSLLRNLDGHT 412 (466)
T ss_pred CCEEEEeecCCCcEEeeecCCCceeEEecCCceEEEEEECC-C-CCEEEEecCCC-----ceEEEecccCeeeeeccCCC
Confidence 3555555 67889999999887611100 00 11111111 1 00000 00000 001111111111111111
Q ss_pred CcEEEeeecccCCEEEEEecCCeEEEEEeCC
Q 018248 308 NVQYLVGFGRQNNTIVIVGLDGSYYKCEFDP 338 (359)
Q Consensus 308 ~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~ 338 (359)
..+..+.+++++..++.++.++.+.+|+...
T Consensus 413 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (466)
T COG2319 413 SRVTSLDFSPDGKSLASGSSDNTIRLWDLKT 443 (466)
T ss_pred CcEEEEEECCCCcEEEEecCCCcEEEEeccC
Confidence 4778889999999999999999999998865
No 193
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.77 E-value=3.3e-15 Score=129.61 Aligned_cols=178 Identities=11% Similarity=0.060 Sum_probs=120.7
Q ss_pred CCeEEEEECCCccEEeeeccCcceeEEEEecceeEEE------ecCeEEEEEcccceeeeeEeccCCCceeeeeecCCCc
Q 018248 75 SNKVMIWDDHENRYLGELSFRSEVKNVRLRRDRIVVV------LNQKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAGP 148 (359)
Q Consensus 75 d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~------~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (359)
...|.++|...........+...+...+|+|||+.++ .+..|++|++.+++.... ...........|+|+++.
T Consensus 178 ~~~l~~~d~dg~~~~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l-~~~~~~~~~~~~SPDG~~ 256 (429)
T PRK03629 178 PYELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQV-ASFPRHNGAPAFSPDGSK 256 (429)
T ss_pred ceeEEEEcCCCCCCEEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEc-cCCCCCcCCeEECCCCCE
Confidence 3579999977655444444677899999999998877 245799999987754322 222333456899999987
Q ss_pred cEEEecCCCCeeEEEEecCCeeeEEeecccccccEEEEccCCcEEEEEeCC-CC-eEEEEEcCCCcEEEEeecCCCCcce
Q 018248 149 MVMACPGLLKGQVRVEDYGTKKSKYITAHASRIASIAMTLDGRFVATASSK-GT-LIRVFNTMDGSLLQEMRRGAERAEI 226 (359)
Q Consensus 149 ~~l~~~g~~d~~v~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d-g~-~i~iwd~~~~~~~~~~~~~~~~~~i 226 (359)
++++.....+..|++|+..+.....+..+...+....|+|||+.|+..+.+ +. .|+++|+.+++.. .+.. .....
T Consensus 257 La~~~~~~g~~~I~~~d~~tg~~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~-~lt~--~~~~~ 333 (429)
T PRK03629 257 LAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQ-RITW--EGSQN 333 (429)
T ss_pred EEEEEcCCCCcEEEEEECCCCCEEEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeE-Eeec--CCCCc
Confidence 554432222335777888776666666666678899999999988777654 33 1455566666543 3332 22345
Q ss_pred EEEEecCCCCEEEEEcCC---CcEEEEEccCCC
Q 018248 227 YSLAFSSNAQWLAASSDK---GTVHVFGLKVDS 256 (359)
Q Consensus 227 ~~~~~s~~~~~l~~~~~d---g~i~iw~~~~~~ 256 (359)
....|+|||++|+..+.+ ..|.+||+.+++
T Consensus 334 ~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~ 366 (429)
T PRK03629 334 QDADVSSDGKFMVMVSSNGGQQHIAKQDLATGG 366 (429)
T ss_pred cCEEECCCCCEEEEEEccCCCceEEEEECCCCC
Confidence 678999999998876543 358888887765
No 194
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.76 E-value=2.5e-17 Score=131.99 Aligned_cols=196 Identities=18% Similarity=0.254 Sum_probs=146.1
Q ss_pred eEEEEeccCCEEEEEecCCCCCCeEEEEECCCccEEeeec-cCcceeEEEEecceeEEE---ecCeEEEEEcccceeeee
Q 018248 54 QLVSMLFRSNIICLVNSGPHQSNKVMIWDDHENRYLGELS-FRSEVKNVRLRRDRIVVV---LNQKVYVYNFTDLKLVDQ 129 (359)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~ 129 (359)
.++++..++..+++.+ .||++|+|+..+...+.... |..+|.++.|+||+++++ .| ..+||+.+++..+..
T Consensus 148 k~vaf~~~gs~latgg----~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~ 222 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGG----TDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALAR 222 (398)
T ss_pred eEEEEcCCCCEeeecc----ccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhh
Confidence 5677777777777766 79999999977776666555 999999999999999998 55 999999999966665
Q ss_pred EeccC--CCceeeeeecCC--CccEEEecCCCCeeEEEEecCC----ee--eEEeecccccccEEEEccCCcEEEEEeCC
Q 018248 130 IETVV--NPTGLCDVSQNA--GPMVMACPGLLKGQVRVEDYGT----KK--SKYITAHASRIASIAMTLDGRFVATASSK 199 (359)
Q Consensus 130 ~~~~~--~~~~~~~~~~~~--~~~~l~~~g~~d~~v~~~~~~~----~~--~~~~~~~~~~i~~~~~s~~~~~l~~~~~d 199 (359)
..... .....+.|+.++ +.+++++.-...+.|+.++... .. .+........|.+++.+++|+++|.|+.|
T Consensus 223 ~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~d 302 (398)
T KOG0771|consen 223 KTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMD 302 (398)
T ss_pred cCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccC
Confidence 54322 223456666655 3344444333344444433221 11 11222234579999999999999999999
Q ss_pred CCeEEEEEcCCCcEEEEeecCCCCcceEEEEecCCCCEEEEEcCCCcEEEEEccCCC
Q 018248 200 GTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSNAQWLAASSDKGTVHVFGLKVDS 256 (359)
Q Consensus 200 g~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~ 256 (359)
|. |.|++..+.+.++..+ +.|...|+.+.|+||.+++++.+.+....|..+....
T Consensus 303 Gs-Vai~~~~~lq~~~~vk-~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~vd~ 357 (398)
T KOG0771|consen 303 GS-VAIYDAKSLQRLQYVK-EAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAVDK 357 (398)
T ss_pred Cc-EEEEEeceeeeeEeeh-hhheeeeeeEEEcCCcCcccccccCCceeEEEEeecc
Confidence 99 9999999988887776 4488899999999999999999999999999887633
No 195
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.76 E-value=1.6e-16 Score=131.15 Aligned_cols=224 Identities=13% Similarity=0.184 Sum_probs=139.5
Q ss_pred eEEEEEccCCCEEEEecCCceEEEEcCCCcc----eeeeecccCCCCceeEEEEec----cCCEEEEEecCCCCCCeEEE
Q 018248 9 IHHLALNQDHGCFATGTETGFRVYLSDPYKP----IMRRDFDRNPRGGTQLVSMLF----RSNIICLVNSGPHQSNKVMI 80 (359)
Q Consensus 9 v~~~~~s~~g~~l~~~~d~~i~iw~~~~~~~----~~~~~~~~~h~~~v~~~~~~~----~~~~~~~~~~~~~~d~~i~i 80 (359)
+....++-.|++|+..-...+.+|+...+.. +....+. .....+-++.. ....-++++- .-|.|.+
T Consensus 126 ~~~~~~~~~gd~lcFnvg~~lyv~~~~g~~~~~~pi~k~~y~---gt~P~cHdfn~~~a~~~g~dllIGf---~tGqvq~ 199 (636)
T KOG2394|consen 126 VTNTNQSGKGDRLCFNVGRELYVYSYRGAADLSKPIDKREYK---GTSPTCHDFNSFTATPKGLDLLIGF---TTGQVQL 199 (636)
T ss_pred eeeccccCCCCEEEEecCCeEEEEEccCcchhccchhhhccc---CCCCceecccccccCCCCcceEEee---ccCceEE
Confidence 4455555677788776667788888774221 1111221 11112222210 1112222332 2388888
Q ss_pred EECCCccEEeeec-----cCcceeEEEEecc--eeEEE--ecCeEEEEEcccceeeeeEeccCCCceeeeeecCCCccEE
Q 018248 81 WDDHENRYLGELS-----FRSEVKNVRLRRD--RIVVV--LNQKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAGPMVM 151 (359)
Q Consensus 81 wd~~~~~~~~~~~-----~~~~v~~~~~~~~--~~~~~--~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 151 (359)
.|....+..+.+. .+..|+++.|-|. +.+++ .+|.+++||..- ...... ......++++.+.+
T Consensus 200 idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~------~~~~t~--p~~~~~k~~~~f~i 271 (636)
T KOG2394|consen 200 IDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEI------VCGATA--PSYQALKDGDQFAI 271 (636)
T ss_pred ecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccc------cccCCC--CcccccCCCCeeEE
Confidence 8866533222222 3478999999885 45555 999999999611 001111 11122233433222
Q ss_pred EecCCCCeeEEEEecCCeeeEEeecccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcEEEEeecCCCCcceEEEEe
Q 018248 152 ACPGLLKGQVRVEDYGTKKSKYITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAF 231 (359)
Q Consensus 152 ~~~g~~d~~v~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~ 231 (359)
.. + ....+..++..+.-.++.|+..+|+|||++||+.+.||. ++|||..+.+++..++. .-+...|++|
T Consensus 272 ~t-~-------ksk~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGf-LRvF~fdt~eLlg~mkS--YFGGLLCvcW 340 (636)
T KOG2394|consen 272 LT-S-------KSKKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGF-LRIFDFDTQELLGVMKS--YFGGLLCVCW 340 (636)
T ss_pred ee-e-------eccccCCccceeEeccccccceeEcCCCceEEEEecCce-EEEeeccHHHHHHHHHh--hccceEEEEE
Confidence 11 0 011122455555556679999999999999999999999 99999988887766665 4468999999
Q ss_pred cCCCCEEEEEcCCCcEEEEEccCCCC
Q 018248 232 SSNAQWLAASSDKGTVHVFGLKVDSG 257 (359)
Q Consensus 232 s~~~~~l~~~~~dg~i~iw~~~~~~~ 257 (359)
||||++|++|++|..|.||.+..++.
T Consensus 341 SPDGKyIvtGGEDDLVtVwSf~erRV 366 (636)
T KOG2394|consen 341 SPDGKYIVTGGEDDLVTVWSFEERRV 366 (636)
T ss_pred cCCccEEEecCCcceEEEEEeccceE
Confidence 99999999999999999999988763
No 196
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.76 E-value=2.7e-15 Score=124.71 Aligned_cols=275 Identities=11% Similarity=0.140 Sum_probs=182.1
Q ss_pred CceEEEEEccCCCEEEEecCCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEE-----ecCCC-CCCeEEE
Q 018248 7 ITIHHLALNQDHGCFATGTETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLV-----NSGPH-QSNKVMI 80 (359)
Q Consensus 7 ~~v~~~~~s~~g~~l~~~~d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~-----~~~~~-~d~~i~i 80 (359)
.+....++|++|+++|.+.+..++|++........... ...+..+.++|.++++..- ..... ....+.+
T Consensus 35 ~~~~v~~~S~~G~lfA~~~~~~v~i~~~~~~~~~lt~~-----~~~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v 109 (566)
T KOG2315|consen 35 RPCNVFAYSNNGRLFAYSDNQVVKVFEIATLKVVLCVE-----LKKTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVLV 109 (566)
T ss_pred CcceeEEEcCCCcEEEEEcCCeEEEEEccCCcEEEEec-----cceeeeeeecccccccccccccccccCCCCCCCceee
Confidence 34678899999999999999999999998776333322 2366777777777665432 10000 2356889
Q ss_pred EECCCccEEeeeccC-cceeEEEEecceeEEE--ecCeEEEEEcccceeeeeEeccCCCceeeeeecCCCccEEEec---
Q 018248 81 WDDHENRYLGELSFR-SEVKNVRLRRDRIVVV--LNQKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAGPMVMACP--- 154 (359)
Q Consensus 81 wd~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~--~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--- 154 (359)
|+++++.....+... ..-++..|++|..+.+ ..+.+++|++.+.+.+.. ..+...+....++|.+....+|+-
T Consensus 110 ~~vet~~~~s~~q~k~Q~~W~~qfs~dEsl~arlv~nev~f~~~~~f~~~~~-kl~~~~i~~f~lSpgp~~~~vAvyvPe 188 (566)
T KOG2315|consen 110 YNVETGVQRSQIQKKMQNGWVPQFSIDESLAARLVSNEVQFYDLGSFKTIQH-KLSVSGITMLSLSPGPEPPFVAVYVPE 188 (566)
T ss_pred eeeccceehhheehhhhcCcccccccchhhhhhhhcceEEEEecCCccceee-eeeccceeeEEecCCCCCceEEEEccC
Confidence 999997666666522 2226899999998888 889999999865332211 223444566666666444334321
Q ss_pred -CCCCeeEEEEecC--------------------------C-------------------------------eeeEEeec
Q 018248 155 -GLLKGQVRVEDYG--------------------------T-------------------------------KKSKYITA 176 (359)
Q Consensus 155 -g~~d~~v~~~~~~--------------------------~-------------------------------~~~~~~~~ 176 (359)
++.-..|+||... + .....--.
T Consensus 189 ~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~ 268 (566)
T KOG2315|consen 189 KKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLL 268 (566)
T ss_pred CCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecC
Confidence 1112233332221 1 11111112
Q ss_pred ccccccEEEEccCCcEEEEE--eCCCCeEEEEEcCCCcEEEEeecCCCCcceEEEEecCCCCEEEEEcC---CCcEEEEE
Q 018248 177 HASRIASIAMTLDGRFVATA--SSKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSNAQWLAASSD---KGTVHVFG 251 (359)
Q Consensus 177 ~~~~i~~~~~s~~~~~l~~~--~~dg~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~---dg~i~iw~ 251 (359)
..++|.++.|+|+++.++++ -.-.. +.|||+ .+..+..+.. ++-+++-|+|.|++|+.++- .|.+-|||
T Consensus 269 k~GPVhdv~W~~s~~EF~VvyGfMPAk-vtifnl-r~~~v~df~e----gpRN~~~fnp~g~ii~lAGFGNL~G~mEvwD 342 (566)
T KOG2315|consen 269 KEGPVHDVTWSPSGREFAVVYGFMPAK-VTIFNL-RGKPVFDFPE----GPRNTAFFNPHGNIILLAGFGNLPGDMEVWD 342 (566)
T ss_pred CCCCceEEEECCCCCEEEEEEecccce-EEEEcC-CCCEeEeCCC----CCccceEECCCCCEEEEeecCCCCCceEEEe
Confidence 36799999999999866543 45566 999996 5777877753 57789999999999988875 47899999
Q ss_pred ccCCCCCCCCCccccCCCCCccCCCCCceeeeeEeeeecceEEecccceeEEeecCCcEEEeeecccCCEEEEEec----
Q 018248 252 LKVDSGSPGTSKLHSASEPNLSSKNSSAISSFRFIRGVLPKYFSSKWSMAQFRLPENVQYLVGFGRQNNTIVIVGL---- 327 (359)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~---- 327 (359)
+.+.+... + + ....-+.+.|+|||.++++++.
T Consensus 343 v~n~K~i~--------------------------------~-~-----------~a~~tt~~eW~PdGe~flTATTaPRl 378 (566)
T KOG2315|consen 343 VPNRKLIA--------------------------------K-F-----------KAANTTVFEWSPDGEYFLTATTAPRL 378 (566)
T ss_pred ccchhhcc--------------------------------c-c-----------ccCCceEEEEcCCCcEEEEEeccccE
Confidence 99966321 0 0 1112356899999999999886
Q ss_pred --CCeEEEEEeC
Q 018248 328 --DGSYYKCEFD 337 (359)
Q Consensus 328 --dg~i~v~~~~ 337 (359)
|..++||++.
T Consensus 379 rvdNg~Kiwhyt 390 (566)
T KOG2315|consen 379 RVDNGIKIWHYT 390 (566)
T ss_pred EecCCeEEEEec
Confidence 7889999986
No 197
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.76 E-value=1.6e-16 Score=126.39 Aligned_cols=222 Identities=13% Similarity=0.115 Sum_probs=158.7
Q ss_pred CCCCceEEEEEcc-CCCEEEEec-CCceEEEEcCCCcce-----eeeecccCCCCceeEEEEeccCCEEEEEecCCCCCC
Q 018248 4 PDPITIHHLALNQ-DHGCFATGT-ETGFRVYLSDPYKPI-----MRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSN 76 (359)
Q Consensus 4 ~h~~~v~~~~~s~-~g~~l~~~~-d~~i~iw~~~~~~~~-----~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~ 76 (359)
.|+.+|..++|+| +...||+|+ |.+|.||.+-..... ....+. ||...|..++|+|....+++.++ .|+
T Consensus 79 GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~-gH~rrVg~V~wHPtA~NVLlsag---~Dn 154 (472)
T KOG0303|consen 79 GHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELY-GHQRRVGLVQWHPTAPNVLLSAG---SDN 154 (472)
T ss_pred CccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEe-ecceeEEEEeecccchhhHhhcc---CCc
Confidence 5899999999999 556778999 999999998643221 123444 99999999999998766655554 589
Q ss_pred eEEEEECCCccEEeeeccCcceeEEEEecceeEEE---ecCeEEEEEcccceeeeeEeccCCCce-eeeeecCCCccEEE
Q 018248 77 KVMIWDDHENRYLGELSFRSEVKNVRLRRDRIVVV---LNQKVYVYNFTDLKLVDQIETVVNPTG-LCDVSQNAGPMVMA 152 (359)
Q Consensus 77 ~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~ 152 (359)
+|.+||+.+|+.+.++.|++.|.++.|+.+|.+++ .|..|+|||.++++.+..-..|.+.-. -+.|-.+++ ++
T Consensus 155 ~v~iWnv~tgeali~l~hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~---i~ 231 (472)
T KOG0303|consen 155 TVSIWNVGTGEALITLDHPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGK---IF 231 (472)
T ss_pred eEEEEeccCCceeeecCCCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCc---ee
Confidence 99999999999999999999999999999999998 899999999999999888766655332 233444444 44
Q ss_pred ecCC---CCeeEEEEecCC--ee--eEEeecccccccEEEEccCCcEEEEE-eCCCCeEEEEEcCCCcEE-EEeecCCCC
Q 018248 153 CPGL---LKGQVRVEDYGT--KK--SKYITAHASRIASIAMTLDGRFVATA-SSKGTLIRVFNTMDGSLL-QEMRRGAER 223 (359)
Q Consensus 153 ~~g~---~d~~v~~~~~~~--~~--~~~~~~~~~~i~~~~~s~~~~~l~~~-~~dg~~i~iwd~~~~~~~-~~~~~~~~~ 223 (359)
++|. .+..+.+|+... .+ ...+. ..+.|.---|.||.+.+..+ -.|+. |+-|.+.+..+. +-+..-...
T Consensus 232 tTGfsr~seRq~aLwdp~nl~eP~~~~elD-tSnGvl~PFyD~dt~ivYl~GKGD~~-IRYyEit~d~P~~hyln~f~S~ 309 (472)
T KOG0303|consen 232 TTGFSRMSERQIALWDPNNLEEPIALQELD-TSNGVLLPFYDPDTSIVYLCGKGDSS-IRYFEITNEPPFVHYLNTFSSK 309 (472)
T ss_pred eeccccccccceeccCcccccCcceeEEec-cCCceEEeeecCCCCEEEEEecCCcc-eEEEEecCCCceeEEecccccC
Confidence 4343 467778887654 11 22333 23455556678888876554 47888 999998766532 222111123
Q ss_pred cceEEEEecCC
Q 018248 224 AEIYSLAFSSN 234 (359)
Q Consensus 224 ~~i~~~~~s~~ 234 (359)
.+-..+.|-|.
T Consensus 310 epQRG~g~mPK 320 (472)
T KOG0303|consen 310 EPQRGMGFMPK 320 (472)
T ss_pred Ccccccccccc
Confidence 35556666664
No 198
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.75 E-value=2.4e-15 Score=131.31 Aligned_cols=175 Identities=14% Similarity=0.080 Sum_probs=122.2
Q ss_pred CeEEEEECCCccEEeeeccCcceeEEEEecceeEEE------ecCeEEEEEcccceeeeeEeccCCCceeeeeecCCCcc
Q 018248 76 NKVMIWDDHENRYLGELSFRSEVKNVRLRRDRIVVV------LNQKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAGPM 149 (359)
Q Consensus 76 ~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~------~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (359)
..|.++|...........+...+...+|+|||+.++ .+..|++||+.+++.. .+......+...+|+|+++.+
T Consensus 182 ~~l~~~d~dg~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-~l~~~~g~~~~~~~SPDG~~l 260 (435)
T PRK05137 182 KRLAIMDQDGANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE-LVGNFPGMTFAPRFSPDGRKV 260 (435)
T ss_pred eEEEEECCCCCCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE-EeecCCCcccCcEECCCCCEE
Confidence 589999975544433334778899999999998777 2468999999877653 344445556678999999875
Q ss_pred EEEecCCCCeeEEEEecCCeeeEEeecccccccEEEEccCCcEEEEEeC-CC--CeEEEEEcCCCcEEEEeecCCCCcce
Q 018248 150 VMACPGLLKGQVRVEDYGTKKSKYITAHASRIASIAMTLDGRFVATASS-KG--TLIRVFNTMDGSLLQEMRRGAERAEI 226 (359)
Q Consensus 150 ~l~~~g~~d~~v~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~-dg--~~i~iwd~~~~~~~~~~~~~~~~~~i 226 (359)
++.........|++++..+.....+..+........|+|||+.|+..+. +| . |+++|+.+++.. .+.. +...+
T Consensus 261 a~~~~~~g~~~Iy~~d~~~~~~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~-Iy~~d~~g~~~~-~lt~--~~~~~ 336 (435)
T PRK05137 261 VMSLSQGGNTDIYTMDLRSGTTTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQ-LYVMNADGSNPR-RISF--GGGRY 336 (435)
T ss_pred EEEEecCCCceEEEEECCCCceEEccCCCCccCceeEcCCCCEEEEEECCCCCCe-EEEEECCCCCeE-Eeec--CCCcc
Confidence 4443222233466677777777777777777788999999998887764 33 5 888887666544 3332 23456
Q ss_pred EEEEecCCCCEEEEEcCC---CcEEEEEccCC
Q 018248 227 YSLAFSSNAQWLAASSDK---GTVHVFGLKVD 255 (359)
Q Consensus 227 ~~~~~s~~~~~l~~~~~d---g~i~iw~~~~~ 255 (359)
....|+|||+.|+..+.+ ..|.+||+..+
T Consensus 337 ~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~ 368 (435)
T PRK05137 337 STPVWSPRGDLIAFTKQGGGQFSIGVMKPDGS 368 (435)
T ss_pred cCeEECCCCCEEEEEEcCCCceEEEEEECCCC
Confidence 778999999999876543 25777787544
No 199
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.75 E-value=5.3e-17 Score=132.38 Aligned_cols=285 Identities=13% Similarity=0.124 Sum_probs=201.7
Q ss_pred CCCCCceEEEEEccCCCEEEEec-CCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEE
Q 018248 3 QPDPITIHHLALNQDHGCFATGT-ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIW 81 (359)
Q Consensus 3 ~~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iw 81 (359)
..|++.|..+.|+..|..|++|+ |..|.+||......+ ..+..||...|....|.|...-.-+++++ .||.+++=
T Consensus 139 ~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~--l~f~SGH~~NvfQaKFiP~s~d~ti~~~s--~dgqvr~s 214 (559)
T KOG1334|consen 139 NKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPK--LSFESGHCNNVFQAKFIPFSGDRTIVTSS--RDGQVRVS 214 (559)
T ss_pred cCCCCccceeeecccCceeeccCccceEEeehhhccCcc--cccccccccchhhhhccCCCCCcCceecc--ccCceeee
Confidence 47999999999999999999999 999999999987666 44555899998888888766544444444 68999988
Q ss_pred ECCC-ccEE---eeeccCcceeEEEEecceeEEE----ecCeEEEEEcccceeeeeEec---cCC-Cc--eeeeeecCCC
Q 018248 82 DDHE-NRYL---GELSFRSEVKNVRLRRDRIVVV----LNQKVYVYNFTDLKLVDQIET---VVN-PT--GLCDVSQNAG 147 (359)
Q Consensus 82 d~~~-~~~~---~~~~~~~~v~~~~~~~~~~~~~----~d~~i~i~d~~~~~~~~~~~~---~~~-~~--~~~~~~~~~~ 147 (359)
.+.. +.+. +..+|.++|..++.-|+...-+ .|+.+.-+|++...+...+.. +.. .| ..++..|...
T Consensus 215 ~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt 294 (559)
T KOG1334|consen 215 EILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNT 294 (559)
T ss_pred eeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCCc
Confidence 7543 3333 2223999999999988765443 899999999977655444322 111 13 3445555544
Q ss_pred ccEEEecCCCCeeEEEEecCC-------eeeEEee------cccccccEEEEccCCcEEEEEeCCCCeEEEEEcCC--C-
Q 018248 148 PMVMACPGLLKGQVRVEDYGT-------KKSKYIT------AHASRIASIAMTLDGRFVATASSKGTLIRVFNTMD--G- 211 (359)
Q Consensus 148 ~~~l~~~g~~d~~v~~~~~~~-------~~~~~~~------~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~--~- 211 (359)
+ .+++ |..|-.+++++.+. ..+..+. ...-.|++++|+.++.-|.++..|-. |++|.-.. |
T Consensus 295 ~-~faV-gG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~-IYLF~~~~~~G~ 371 (559)
T KOG1334|consen 295 N-EFAV-GGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDED-IYLFNKSMGDGS 371 (559)
T ss_pred c-cccc-CChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccc-eEEeccccccCC
Confidence 3 2444 66788888866543 1122222 22346999999988777767777777 99995332 2
Q ss_pred ---------cEEEE-eecCCCCcceEEEEe-cCCCCEEEEEcCCCcEEEEEccCCCCCCCCCccccCCCCCccCCCCCce
Q 018248 212 ---------SLLQE-MRRGAERAEIYSLAF-SSNAQWLAASSDKGTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSAI 280 (359)
Q Consensus 212 ---------~~~~~-~~~~~~~~~i~~~~~-s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (359)
..++. +++|.....|..+-| -|...++++|++-|.|.||+-.+++
T Consensus 372 ~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~e------------------------ 427 (559)
T KOG1334|consen 372 EPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGE------------------------ 427 (559)
T ss_pred CCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhH------------------------
Confidence 22333 666555556777765 5888999999999999999999877
Q ss_pred eeeeEeeeecceEEecccceeEEeecCCcEEEeeecccCCEEEEEecCCeEEEEEe
Q 018248 281 SSFRFIRGVLPKYFSSKWSMAQFRLPENVQYLVGFGRQNNTIVIVGLDGSYYKCEF 336 (359)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~ 336 (359)
+.+++... ...|+++.=+|--..||+.|-|--|+||.-
T Consensus 428 ---------ii~~MegD---------r~VVNCLEpHP~~PvLAsSGid~DVKIWTP 465 (559)
T KOG1334|consen 428 ---------IIRFMEGD---------RHVVNCLEPHPHLPVLASSGIDHDVKIWTP 465 (559)
T ss_pred ---------HHHHhhcc---------cceEeccCCCCCCchhhccCCccceeeecC
Confidence 22233332 347888888998899999999999999954
No 200
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.75 E-value=2.2e-15 Score=118.77 Aligned_cols=237 Identities=16% Similarity=0.195 Sum_probs=158.8
Q ss_pred CceEEEEEccCCCEEEEec-CCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEECCC
Q 018248 7 ITIHHLALNQDHGCFATGT-ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDDHE 85 (359)
Q Consensus 7 ~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~~~ 85 (359)
-.+..++|++.-..+|++. |..|++|+-........+.. -...+.+++|.|.....+.++ ..+-|.+|....
T Consensus 99 ~dlr~~aWhqH~~~fava~nddvVriy~ksst~pt~Lks~---sQrnvtclawRPlsaselavg----Cr~gIciW~~s~ 171 (445)
T KOG2139|consen 99 IDLRGVAWHQHIIAFAVATNDDVVRIYDKSSTCPTKLKSV---SQRNVTCLAWRPLSASELAVG----CRAGICIWSDSR 171 (445)
T ss_pred cceeeEeechhhhhhhhhccCcEEEEeccCCCCCceecch---hhcceeEEEeccCCcceeeee----ecceeEEEEcCc
Confidence 4577899999777788888 99999999876333333332 267899999999876666666 348899997542
Q ss_pred c----cE--------Eeeec--cCcceeEEEEecceeEEE----ecCeEEEEEcccceeeeeEeccCCCceeeeeecCCC
Q 018248 86 N----RY--------LGELS--FRSEVKNVRLRRDRIVVV----LNQKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAG 147 (359)
Q Consensus 86 ~----~~--------~~~~~--~~~~v~~~~~~~~~~~~~----~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (359)
. .. .+.++ ...+|++++|++||..++ .+..|.|||..+++.+.......+.+..+.|+|+++
T Consensus 172 tln~~r~~~~~s~~~~qvl~~pgh~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd 251 (445)
T KOG2139|consen 172 TLNANRNIRMMSTHHLQVLQDPGHNPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGD 251 (445)
T ss_pred ccccccccccccccchhheeCCCCceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCC
Confidence 1 11 11222 236899999999998887 889999999988877665544556678899999999
Q ss_pred ccEEEecCCCCeeEEEEecCC-eeeEEeecccccccEEEEccCCcEEEEEeCCCCeEEEEEcCC----Cc----------
Q 018248 148 PMVMACPGLLKGQVRVEDYGT-KKSKYITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMD----GS---------- 212 (359)
Q Consensus 148 ~~~l~~~g~~d~~v~~~~~~~-~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~----~~---------- 212 (359)
.++.++ -|+..++|.... ..........+.|...+|+|+|++|..+..... ++|.+.- ..
T Consensus 252 ~lfaAt---~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~sgsp--~lysl~f~~~~~~~~~~~~~k~~ 326 (445)
T KOG2139|consen 252 VLFAAT---CDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFACSGSP--RLYSLTFDGEDSVFLRPQSIKRV 326 (445)
T ss_pred EEEEec---ccceeeeehhcccceecceeccCCceeeeeecCCCCEEEEEEcCCc--eEEEEeecCCCccccCcccceee
Confidence 744443 589999995443 222333334558999999999997765554332 4444321 10
Q ss_pred -EEEEee-----cC--CCCcceEEEEecCCCCEEEEEcCCC--------cEEEEEccCC
Q 018248 213 -LLQEMR-----RG--AERAEIYSLAFSSNAQWLAASSDKG--------TVHVFGLKVD 255 (359)
Q Consensus 213 -~~~~~~-----~~--~~~~~i~~~~~s~~~~~l~~~~~dg--------~i~iw~~~~~ 255 (359)
++..+. .+ .-.+++.+++|.|.|.+|++.-..+ .|.+||.+..
T Consensus 327 lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~s 385 (445)
T KOG2139|consen 327 LLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKS 385 (445)
T ss_pred eeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhccccc
Confidence 011110 00 0135788999999999999865433 3555665543
No 201
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.75 E-value=4.9e-17 Score=134.85 Aligned_cols=241 Identities=10% Similarity=0.051 Sum_probs=177.4
Q ss_pred CCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEECCC--------ccEEeeec-cCcceeEEEEecceeEEE---ecCe
Q 018248 48 NPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDDHE--------NRYLGELS-FRSEVKNVRLRRDRIVVV---LNQK 115 (359)
Q Consensus 48 ~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~~~--------~~~~~~~~-~~~~v~~~~~~~~~~~~~---~d~~ 115 (359)
.|...+..+.+.+....++.++ .|+++++|++.. -+++.++. |.++|.|+++.+++..+. .||+
T Consensus 292 s~~d~ir~l~~~~sep~lit~s----ed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~ 367 (577)
T KOG0642|consen 292 SHDDCIRALAFHPSEPVLITAS----EDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGT 367 (577)
T ss_pred cchhhhhhhhcCCCCCeEEEec----cccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCce
Confidence 5778888888888888888888 899999999832 25677777 999999999999998888 8999
Q ss_pred EEEEEccc----------ceeeeeEeccCCCceeeeeecCCCccEEEecCCCCeeEEEEecCCeeeEEeecc--cccccE
Q 018248 116 VYVYNFTD----------LKLVDQIETVVNPTGLCDVSQNAGPMVMACPGLLKGQVRVEDYGTKKSKYITAH--ASRIAS 183 (359)
Q Consensus 116 i~i~d~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~v~~~~~~~~~~~~~~~~--~~~i~~ 183 (359)
|+.|++.. ......+.+|...++.++++...+. |++ ++.||+++.|........++... .+...+
T Consensus 368 I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~--Lls-cs~DgTvr~w~~~~~~~~~f~~~~e~g~Pls 444 (577)
T KOG0642|consen 368 IRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDR--LLS-CSSDGTVRLWEPTEESPCTFGEPKEHGYPLS 444 (577)
T ss_pred eeeeccCCCCCcccccCcchhccceeccccceeeeeecccccc--eee-ecCCceEEeeccCCcCccccCCccccCCcce
Confidence 99997631 1234566789999999999998887 444 55799999999887655444332 233455
Q ss_pred EEEccCCc-EEEEEeCCCCeEEEEEcCCCcEEEEeecCCCC-----cceEEEEecCCCCEEEEEcCCCcEEEEEccCCCC
Q 018248 184 IAMTLDGR-FVATASSKGTLIRVFNTMDGSLLQEMRRGAER-----AEIYSLAFSSNAQWLAASSDKGTVHVFGLKVDSG 257 (359)
Q Consensus 184 ~~~s~~~~-~l~~~~~dg~~i~iwd~~~~~~~~~~~~~~~~-----~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~ 257 (359)
+.+-.... ..++...-+. -.++++.....+..+.....+ ..+..+.++|.+.+.+++..|+.|+++|..++..
T Consensus 445 vd~~ss~~a~~~~s~~~~~-~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~ 523 (577)
T KOG0642|consen 445 VDRTSSRPAHSLASFRFGY-TSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKI 523 (577)
T ss_pred EeeccchhHhhhhhccccc-ccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceeccccccccc
Confidence 55543331 2222223333 345555555555555432222 3577889999999999999999999999999873
Q ss_pred CCCCCccccCCCCCccCCCCCceeeeeEeeeecceEEecccceeEEeecCCcEEEeeecccCCEEEEEecCCeEEEEEeC
Q 018248 258 SPGTSKLHSASEPNLSSKNSSAISSFRFIRGVLPKYFSSKWSMAQFRLPENVQYLVGFGRQNNTIVIVGLDGSYYKCEFD 337 (359)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~ 337 (359)
.. ....+...++++++.|+|.+|++++.||.+++|+++
T Consensus 524 l~------------------------------------------s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld 561 (577)
T KOG0642|consen 524 LH------------------------------------------SMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLD 561 (577)
T ss_pred ch------------------------------------------heeeccceecceeecCCCceEEeecCCceeehhhcc
Confidence 31 123345678999999999999999999999999997
Q ss_pred C
Q 018248 338 P 338 (359)
Q Consensus 338 ~ 338 (359)
.
T Consensus 562 ~ 562 (577)
T KOG0642|consen 562 V 562 (577)
T ss_pred c
Confidence 6
No 202
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.74 E-value=4.1e-16 Score=135.08 Aligned_cols=242 Identities=12% Similarity=0.132 Sum_probs=171.2
Q ss_pred CCCceEEEEEccCC-CEEEEec-CCceEEEEcCCCcceeee--e-cccCCCCceeEEEEeccCCE--EEEEecCCCCCCe
Q 018248 5 DPITIHHLALNQDH-GCFATGT-ETGFRVYLSDPYKPIMRR--D-FDRNPRGGTQLVSMLFRSNI--ICLVNSGPHQSNK 77 (359)
Q Consensus 5 h~~~v~~~~~s~~g-~~l~~~~-d~~i~iw~~~~~~~~~~~--~-~~~~h~~~v~~~~~~~~~~~--~~~~~~~~~~d~~ 77 (359)
.+.+|.|+.|+|.. .+++.|. +|.|.+||+..+...... . ....|..++..+.|..+... ++.++ .||.
T Consensus 241 ~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~s----sDG~ 316 (555)
T KOG1587|consen 241 SPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLS----SDGS 316 (555)
T ss_pred cCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEe----cCCc
Confidence 35789999999955 4556666 999999999866552111 1 11257788888888765544 55555 6899
Q ss_pred EEEEECCCccE-E-----eee-------ccCcceeEEEEecce--eEEE--ecCeEEEEEcccce--------eeeeEec
Q 018248 78 VMIWDDHENRY-L-----GEL-------SFRSEVKNVRLRRDR--IVVV--LNQKVYVYNFTDLK--------LVDQIET 132 (359)
Q Consensus 78 i~iwd~~~~~~-~-----~~~-------~~~~~v~~~~~~~~~--~~~~--~d~~i~i~d~~~~~--------~~~~~~~ 132 (359)
|..|+++.-.. . ... .....++++.|.+.. .+++ .+|.|..-+-...+ ....+..
T Consensus 317 i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~ 396 (555)
T KOG1587|consen 317 ICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFIT 396 (555)
T ss_pred EeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccc
Confidence 99998654321 1 111 122457888887643 3444 78888774432221 2334556
Q ss_pred cCCCceeeeeecCCCccEEEecCCCCeeEEEEecC--CeeeEEeecccccccEEEEccCCc-EEEEEeCCCCeEEEEEcC
Q 018248 133 VVNPTGLCDVSQNAGPMVMACPGLLKGQVRVEDYG--TKKSKYITAHASRIASIAMTLDGR-FVATASSKGTLIRVFNTM 209 (359)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~l~~~g~~d~~v~~~~~~--~~~~~~~~~~~~~i~~~~~s~~~~-~l~~~~~dg~~i~iwd~~ 209 (359)
|.+++..+.++|-...+++.+ | |.+++||... ..++..+..+...+++++|||... .++++..||. |.+||+.
T Consensus 397 h~g~v~~v~~nPF~~k~fls~-g--DW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~-l~iWDLl 472 (555)
T KOG1587|consen 397 HIGPVYAVSRNPFYPKNFLSV-G--DWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGN-LDIWDLL 472 (555)
T ss_pred cCcceEeeecCCCccceeeee-c--cceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEcCCCc-eehhhhh
Confidence 788899999999888766665 4 8999998876 356666777778899999999765 7788888999 9999987
Q ss_pred CCc--EEEEeecCCCCcceEEEEecCCCCEEEEEcCCCcEEEEEccCCC
Q 018248 210 DGS--LLQEMRRGAERAEIYSLAFSSNAQWLAASSDKGTVHVFGLKVDS 256 (359)
Q Consensus 210 ~~~--~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~ 256 (359)
... ++..... +....+.+.|+++|+.|++|...|++++|++...-
T Consensus 473 ~~~~~Pv~s~~~--~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~~l 519 (555)
T KOG1587|consen 473 QDDEEPVLSQKV--CSPALTRVRWSPNGKLLAVGDANGTTHILKLSESL 519 (555)
T ss_pred ccccCCcccccc--cccccceeecCCCCcEEEEecCCCcEEEEEcCchh
Confidence 543 3444433 34567788899999999999999999999997543
No 203
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.74 E-value=7.2e-15 Score=109.78 Aligned_cols=226 Identities=14% Similarity=0.153 Sum_probs=159.6
Q ss_pred ceEEEEEccCCCEEEEec-CCceEEEEcCC---------CcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCe
Q 018248 8 TIHHLALNQDHGCFATGT-ETGFRVYLSDP---------YKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNK 77 (359)
Q Consensus 8 ~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~---------~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~ 77 (359)
.|.+-+++|.+++|++|. +|.|.++.++. ++... ... ++|.+++..+++. .. +++++ .||.
T Consensus 12 tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~i-v~e-qahdgpiy~~~f~--d~-~Lls~----gdG~ 82 (325)
T KOG0649|consen 12 TVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKI-VPE-QAHDGPIYYLAFH--DD-FLLSG----GDGL 82 (325)
T ss_pred HHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcce-eec-cccCCCeeeeeee--hh-heeec----cCce
Confidence 466778999999999999 99999998852 22222 222 3899999998876 33 33444 3799
Q ss_pred EEEEECCCccE------Eeeec---c-----CcceeEEEEecceeE--EE-ecCeEEEEEcccceeeeeEeccCCCceee
Q 018248 78 VMIWDDHENRY------LGELS---F-----RSEVKNVRLRRDRIV--VV-LNQKVYVYNFTDLKLVDQIETVVNPTGLC 140 (359)
Q Consensus 78 i~iwd~~~~~~------~~~~~---~-----~~~v~~~~~~~~~~~--~~-~d~~i~i~d~~~~~~~~~~~~~~~~~~~~ 140 (359)
|+-|....... +.+.. + -.+|+++...|..+- ++ .|+.++.||+++|+....+++|..-+.++
T Consensus 83 V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~v 162 (325)
T KOG0649|consen 83 VYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSV 162 (325)
T ss_pred EEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeee
Confidence 99987543211 11111 1 246788888875443 33 99999999999999999999999988877
Q ss_pred eeecCCCccEEEecCCCCeeEEEEecCC-eeeEEeec---------c-cccccEEEEccCCcEEEEEeCCCCeEEEEEcC
Q 018248 141 DVSQNAGPMVMACPGLLKGQVRVEDYGT-KKSKYITA---------H-ASRIASIAMTLDGRFVATASSKGTLIRVFNTM 209 (359)
Q Consensus 141 ~~~~~~~~~~l~~~g~~d~~v~~~~~~~-~~~~~~~~---------~-~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~ 209 (359)
........ +.+ |++||++++|+... +.++.+.. | ...|.+++. +..+|++|+... +.+|+++
T Consensus 163 v~R~~~~q--ils-G~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~--~edWlvCGgGp~--lslwhLr 235 (325)
T KOG0649|consen 163 VGRNANGQ--ILS-GAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAV--NEDWLVCGGGPK--LSLWHLR 235 (325)
T ss_pred eecccCcc--eee-cCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEec--cCceEEecCCCc--eeEEecc
Confidence 66333333 554 88999999988765 44444432 1 123455554 556888776554 8999999
Q ss_pred CCcEEEEeecCCCCcceEEEEecCCCCEEEEEcCCCcEEEEEccC
Q 018248 210 DGSLLQEMRRGAERAEIYSLAFSSNAQWLAASSDKGTVHVFGLKV 254 (359)
Q Consensus 210 ~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~ 254 (359)
..++...|. -++.+..+.|- .+.+++++..+.|.-|.+..
T Consensus 236 sse~t~vfp---ipa~v~~v~F~--~d~vl~~G~g~~v~~~~l~G 275 (325)
T KOG0649|consen 236 SSESTCVFP---IPARVHLVDFV--DDCVLIGGEGNHVQSYTLNG 275 (325)
T ss_pred CCCceEEEe---cccceeEeeee--cceEEEeccccceeeeeecc
Confidence 999998887 35688889995 44777778777888887764
No 204
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.73 E-value=6.8e-15 Score=109.91 Aligned_cols=231 Identities=13% Similarity=0.163 Sum_probs=163.4
Q ss_pred CCCCCceEEEEEccCCCEEEEecCCceEEEEcCCCcc------eeeeecccCC-----CCceeEEEEeccCCEEEEEecC
Q 018248 3 QPDPITIHHLALNQDHGCFATGTETGFRVYLSDPYKP------IMRRDFDRNP-----RGGTQLVSMLFRSNIICLVNSG 71 (359)
Q Consensus 3 ~~h~~~v~~~~~s~~g~~l~~~~d~~i~iw~~~~~~~------~~~~~~~~~h-----~~~v~~~~~~~~~~~~~~~~~~ 71 (359)
|.|..+|+.++|. ..+|++|+||.|+-|..+...+ ..+...+ -| -..|..+.+.|..+.+++++
T Consensus 59 qahdgpiy~~~f~--d~~Lls~gdG~V~gw~W~E~~es~~~K~lwe~~~P-~~~~~~evPeINam~ldP~enSi~~Ag-- 133 (325)
T KOG0649|consen 59 QAHDGPIYYLAFH--DDFLLSGGDGLVYGWEWNEEEESLATKRLWEVKIP-MQVDAVEVPEINAMWLDPSENSILFAG-- 133 (325)
T ss_pred cccCCCeeeeeee--hhheeeccCceEEEeeehhhhhhccchhhhhhcCc-cccCcccCCccceeEeccCCCcEEEec--
Confidence 7899999999999 4588888999999998764322 1111110 12 34577888888899999988
Q ss_pred CCCCCeEEEEECCCccEEeeec-cCcceeEEEE-ecceeEEE--ecCeEEEEEcccceeeeeEeccCCC--------cee
Q 018248 72 PHQSNKVMIWDDHENRYLGELS-FRSEVKNVRL-RRDRIVVV--LNQKVYVYNFTDLKLVDQIETVVNP--------TGL 139 (359)
Q Consensus 72 ~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~-~~~~~~~~--~d~~i~i~d~~~~~~~~~~~~~~~~--------~~~ 139 (359)
.|+.+.-||+++|+..++++ |.+.|.++.- +.+++++. .||++++||.++++.+..+....++ -++
T Consensus 134 --GD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wi 211 (325)
T KOG0649|consen 134 --GDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWI 211 (325)
T ss_pred --CCeEEEEEEecCCEEEEEEcCCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCcee
Confidence 58999999999999999999 9999999998 67778877 9999999999999999888654332 123
Q ss_pred eeeecCCCccEEEecCCCCeeEEEEecCCeeeEEeecccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcEEEEeec
Q 018248 140 CDVSQNAGPMVMACPGLLKGQVRVEDYGTKKSKYITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRR 219 (359)
Q Consensus 140 ~~~~~~~~~~~l~~~g~~d~~v~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~~~~~~~ 219 (359)
.++.-+.+ .++|.| ...+.+|..+.........-..++..+.|.. ..+++++.... |.-|.+ +|........
T Consensus 212 gala~~ed--WlvCGg--Gp~lslwhLrsse~t~vfpipa~v~~v~F~~--d~vl~~G~g~~-v~~~~l-~Gvl~a~ip~ 283 (325)
T KOG0649|consen 212 GALAVNED--WLVCGG--GPKLSLWHLRSSESTCVFPIPARVHLVDFVD--DCVLIGGEGNH-VQSYTL-NGVLQANIPV 283 (325)
T ss_pred EEEeccCc--eEEecC--CCceeEEeccCCCceEEEecccceeEeeeec--ceEEEeccccc-eeeeee-ccEEEEeccC
Confidence 44444444 477633 4578888887644444334456677778854 45667777767 899975 5665555555
Q ss_pred CCCCcceEEEEecCC-CCEEEEEcCCCcEEEE
Q 018248 220 GAERAEIYSLAFSSN-AQWLAASSDKGTVHVF 250 (359)
Q Consensus 220 ~~~~~~i~~~~~s~~-~~~l~~~~~dg~i~iw 250 (359)
.. ...++..|+.. -++|..++....+.|+
T Consensus 284 ~s--~~c~s~s~~~~p~k~~s~ag~s~~~~i~ 313 (325)
T KOG0649|consen 284 ES--TACYSASWQTSPIKFISIAGFSNKLHIL 313 (325)
T ss_pred Cc--cceeeecccCCceEEEEecccceeeeee
Confidence 32 34566666533 3456666777777765
No 205
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.73 E-value=8.4e-16 Score=117.58 Aligned_cols=235 Identities=14% Similarity=0.162 Sum_probs=157.1
Q ss_pred CCCCceEEEEEccCCC-----EEEEecCCceEEEEcCCCcc--eeeeecc----cCCCCceeEEEEec-cCCEEEEEecC
Q 018248 4 PDPITIHHLALNQDHG-----CFATGTETGFRVYLSDPYKP--IMRRDFD----RNPRGGTQLVSMLF-RSNIICLVNSG 71 (359)
Q Consensus 4 ~h~~~v~~~~~s~~g~-----~l~~~~d~~i~iw~~~~~~~--~~~~~~~----~~h~~~v~~~~~~~-~~~~~~~~~~~ 71 (359)
.|+-+++.+.|.|+.. +||+ ++..+|+|.+...+. .....+. ..+..+++...|.. +++++.+.+
T Consensus 94 d~~YP~tK~~wiPd~~g~~pdlLAT-s~D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSS-- 170 (364)
T KOG0290|consen 94 DHPYPVTKLMWIPDSKGVYPDLLAT-SSDFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSS-- 170 (364)
T ss_pred CCCCCccceEecCCccccCcchhhc-ccCeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeec--
Confidence 5778899999999873 3444 456789999874222 1111111 13455666666553 456666666
Q ss_pred CCCCCeEEEEECCCccE---E-eeeccCcceeEEEEecceeEEE----ecCeEEEEEcccceeeeeEecc---CCCceee
Q 018248 72 PHQSNKVMIWDDHENRY---L-GELSFRSEVKNVRLRRDRIVVV----LNQKVYVYNFTDLKLVDQIETV---VNPTGLC 140 (359)
Q Consensus 72 ~~~d~~i~iwd~~~~~~---~-~~~~~~~~v~~~~~~~~~~~~~----~d~~i~i~d~~~~~~~~~~~~~---~~~~~~~ 140 (359)
-|-+..|||++++.. . +-+.|..+|.+++|...+.-++ .||.++++|++..+--..+... ..+.--+
T Consensus 171 --iDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRL 248 (364)
T KOG0290|consen 171 --IDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRL 248 (364)
T ss_pred --ccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceee
Confidence 789999999998733 2 2334999999999999765443 9999999999876544443222 2233334
Q ss_pred eeecCCCccEEEecCCCCeeEEEEecC--CeeeEEeecccccccEEEEccCC-cEEEEEeCCCCeEEEEEcCCCc-----
Q 018248 141 DVSQNAGPMVMACPGLLKGQVRVEDYG--TKKSKYITAHASRIASIAMTLDG-RFVATASSKGTLIRVFNTMDGS----- 212 (359)
Q Consensus 141 ~~~~~~~~~~l~~~g~~d~~v~~~~~~--~~~~~~~~~~~~~i~~~~~s~~~-~~l~~~~~dg~~i~iwd~~~~~----- 212 (359)
+|++... .++|+-+.....|.+-+.+ ..++..++.|++.|+.++|.|.. ..|+++++|.. +.+||+.+.-
T Consensus 249 swnkqDp-nymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~q-aliWDl~q~~~~~~~ 326 (364)
T KOG0290|consen 249 SWNKQDP-NYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQ-ALIWDLQQMPRENGE 326 (364)
T ss_pred ccCcCCc-hHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcce-EEEEecccccccCCC
Confidence 4544333 3455545555667774443 36788899999999999999965 58999999998 9999986532
Q ss_pred -EEEEeecCCCCcceEEEEecC-CCCEEEEEcCCCcEEE
Q 018248 213 -LLQEMRRGAERAEIYSLAFSS-NAQWLAASSDKGTVHV 249 (359)
Q Consensus 213 -~~~~~~~~~~~~~i~~~~~s~-~~~~l~~~~~dg~i~i 249 (359)
++..+. -.+.|+.+.|++ .+.+++.+... .+.|
T Consensus 327 dPilay~---a~~EVNqi~Ws~~~~Dwiai~~~k-klei 361 (364)
T KOG0290|consen 327 DPILAYT---AGGEVNQIQWSSSQPDWIAICFGK-KLEI 361 (364)
T ss_pred Cchhhhh---ccceeeeeeecccCCCEEEEEecC-eeeE
Confidence 222333 246899999996 56678776543 3444
No 206
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.73 E-value=2.7e-15 Score=130.77 Aligned_cols=177 Identities=14% Similarity=0.095 Sum_probs=120.8
Q ss_pred CeEEEEECCCccEEeeeccCcceeEEEEecceeEEE------ecCeEEEEEcccceeeeeEeccCCCceeeeeecCCCcc
Q 018248 76 NKVMIWDDHENRYLGELSFRSEVKNVRLRRDRIVVV------LNQKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAGPM 149 (359)
Q Consensus 76 ~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~------~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (359)
..|.+||...........+...+.+.+|+|+++.++ ....|++||+.+++... +...........|+|+++.+
T Consensus 184 ~~l~i~D~~g~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~-l~~~~g~~~~~~~SpDG~~l 262 (433)
T PRK04922 184 YALQVADSDGYNPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL-VASFRGINGAPSFSPDGRRL 262 (433)
T ss_pred EEEEEECCCCCCceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE-eccCCCCccCceECCCCCEE
Confidence 579999976544444334777899999999998777 23479999997776533 32233344567899999875
Q ss_pred EEEecCCCCeeEEEEecCCeeeEEeecccccccEEEEccCCcEEEEEeC-CCC-eEEEEEcCCCcEEEEeecCCCCcceE
Q 018248 150 VMACPGLLKGQVRVEDYGTKKSKYITAHASRIASIAMTLDGRFVATASS-KGT-LIRVFNTMDGSLLQEMRRGAERAEIY 227 (359)
Q Consensus 150 ~l~~~g~~d~~v~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~-dg~-~i~iwd~~~~~~~~~~~~~~~~~~i~ 227 (359)
++......+..|++++..+.....+..+......++|+|||+.|+..+. +|. .|+++|+.+++...... +.....
T Consensus 263 ~~~~s~~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt~---~g~~~~ 339 (433)
T PRK04922 263 ALTLSRDGNPEIYVMDLGSRQLTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERLTF---QGNYNA 339 (433)
T ss_pred EEEEeCCCCceEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEEeec---CCCCcc
Confidence 5443222234688888877777777766666678999999998887764 333 16666776665433222 223445
Q ss_pred EEEecCCCCEEEEEcCCC---cEEEEEccCCC
Q 018248 228 SLAFSSNAQWLAASSDKG---TVHVFGLKVDS 256 (359)
Q Consensus 228 ~~~~s~~~~~l~~~~~dg---~i~iw~~~~~~ 256 (359)
..+|||||++|+..+.++ .|.+||+.+++
T Consensus 340 ~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~ 371 (433)
T PRK04922 340 RASVSPDGKKIAMVHGSGGQYRIAVMDLSTGS 371 (433)
T ss_pred CEEECCCCCEEEEEECCCCceeEEEEECCCCC
Confidence 789999999998765433 58999987765
No 207
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.72 E-value=3.3e-15 Score=115.85 Aligned_cols=204 Identities=17% Similarity=0.141 Sum_probs=149.6
Q ss_pred CCceEEEEEccCCCEEEEec-CCceEEEEcCCCc-ceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEEC
Q 018248 6 PITIHHLALNQDHGCFATGT-ETGFRVYLSDPYK-PIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDD 83 (359)
Q Consensus 6 ~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~-~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~ 83 (359)
..+|+|.+|++|++.+|++. +..+.||.....+ -....++. .|...+..++|.+..+.++.++ .|..-++|..
T Consensus 10 ~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls-~Hd~~vtgvdWap~snrIvtcs----~drnayVw~~ 84 (361)
T KOG1523|consen 10 LEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLS-EHDKIVTGVDWAPKSNRIVTCS----HDRNAYVWTQ 84 (361)
T ss_pred cCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehh-hhCcceeEEeecCCCCceeEcc----CCCCcccccc
Confidence 57899999999999999999 7899999988766 34445565 7899999999999999998888 7889999986
Q ss_pred CC-ccEEeeeccCcceeEEEEecceeEEEecCeEEEEEcccceeeeeEeccCCCceeeeeecCCCccEEEecCCCCeeEE
Q 018248 84 HE-NRYLGELSFRSEVKNVRLRRDRIVVVLNQKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAGPMVMACPGLLKGQVR 162 (359)
Q Consensus 84 ~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~v~ 162 (359)
.. ++-. +...+..+.....++.|+|..+. +|+ |+....|.
T Consensus 85 ~~~~~Wk------------------------------------ptlvLlRiNrAAt~V~WsP~enk--FAV-gSgar~is 125 (361)
T KOG1523|consen 85 PSGGTWK------------------------------------PTLVLLRINRAATCVKWSPKENK--FAV-GSGARLIS 125 (361)
T ss_pred CCCCeec------------------------------------cceeEEEeccceeeEeecCcCce--EEe-ccCccEEE
Confidence 32 2211 11122223344566677776665 444 44556666
Q ss_pred EEecCCeee-----EEeecccccccEEEEccCCcEEEEEeCCCCeEEEEEcCC------------------CcEEEEeec
Q 018248 163 VEDYGTKKS-----KYITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMD------------------GSLLQEMRR 219 (359)
Q Consensus 163 ~~~~~~~~~-----~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~------------------~~~~~~~~~ 219 (359)
|+-.+.+.- +.-+.+...|+++.|+|++-+|++|+.|+. .++|...- |+++.++..
T Consensus 126 Vcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs~D~k-~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~ 204 (361)
T KOG1523|consen 126 VCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGSTDGK-CRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASS 204 (361)
T ss_pred EEEEecccceehhhhhCCccccceeeeeccCCcceecccccCcc-eeEEEEeeeccccCCCCCCCccCCcHHHHHHhhcc
Confidence 644443221 122456788999999999999999999999 99997421 223333422
Q ss_pred CCCCcceEEEEecCCCCEEEEEcCCCcEEEEEccCCC
Q 018248 220 GAERAEIYSLAFSSNAQWLAASSDKGTVHVFGLKVDS 256 (359)
Q Consensus 220 ~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~ 256 (359)
..+.+..+.|+|+|..|+-.+.|.++.+-|...+.
T Consensus 205 --~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~ 239 (361)
T KOG1523|consen 205 --SGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPS 239 (361)
T ss_pred --CCCceeeeEeCCCCCEeeEecCCCceEEeecCCCc
Confidence 45789999999999999999999999999887765
No 208
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.72 E-value=5.8e-16 Score=116.86 Aligned_cols=237 Identities=13% Similarity=0.109 Sum_probs=150.5
Q ss_pred CCCceEEEEEccCCCEEEEecCCceEEEEcCCCcceeeeecccCCCCceeEEEEe--ccCC---EEEEEecCCCCCCeEE
Q 018248 5 DPITIHHLALNQDHGCFATGTETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSML--FRSN---IICLVNSGPHQSNKVM 79 (359)
Q Consensus 5 h~~~v~~~~~s~~g~~l~~~~d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~---~~~~~~~~~~~d~~i~ 79 (359)
+...|+.+.--|++.+..-|.|..+.+|++..........+. ...+....++ +.++ .++...+.. .| .+.
T Consensus 55 g~~~it~lq~~p~d~l~tqgRd~~L~lw~ia~s~~i~i~Si~---~nslgFCrfSl~~~~k~~eqll~yp~rg-sd-e~h 129 (323)
T KOG0322|consen 55 GRLFITNLQSIPNDSLDTQGRDPLLILWTIAYSAFISIHSIV---VNSLGFCRFSLVKKPKNSEQLLEYPSRG-SD-ETH 129 (323)
T ss_pred ccceeeceeecCCcchhhcCCCceEEEEEccCcceEEEeeee---ccccccccceeccCCCcchhheecCCcc-cc-hhh
Confidence 566788888888866666666999999999865444333332 2222222222 1111 112221110 11 122
Q ss_pred EEECCCccEEeeec-----cCcceeEEEEec-ceeE-EE----ecCeEEEEEcccceee----------eeEeccCCCce
Q 018248 80 IWDDHENRYLGELS-----FRSEVKNVRLRR-DRIV-VV----LNQKVYVYNFTDLKLV----------DQIETVVNPTG 138 (359)
Q Consensus 80 iwd~~~~~~~~~~~-----~~~~v~~~~~~~-~~~~-~~----~d~~i~i~d~~~~~~~----------~~~~~~~~~~~ 138 (359)
+-|......++... ..+.+.+..+.. ++.. ++ .+|.+.+||+.++..+ .....|..++.
T Consensus 130 ~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvl 209 (323)
T KOG0322|consen 130 KQDGGDTTQVQIADDSERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVL 209 (323)
T ss_pred hhccCccceeEccCchhccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcce
Confidence 22222222222221 235566666432 2322 22 8999999999887333 33345667777
Q ss_pred eeeeecCCCccEEEecCCCCeeEEEEecCCe-----eeEEeecccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcE
Q 018248 139 LCDVSQNAGPMVMACPGLLKGQVRVEDYGTK-----KSKYITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSL 213 (359)
Q Consensus 139 ~~~~~~~~~~~~l~~~g~~d~~v~~~~~~~~-----~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~ 213 (359)
.+.+.+.-+. =++ |+.+..+..|..+-. ......-....+..+.+-||++.+|+++.|+. |+||..++..+
T Consensus 210 sldyas~~~r--Gis-gga~dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~R-iRVyswrtl~p 285 (323)
T KOG0322|consen 210 SLDYASSCDR--GIS-GGADDKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHR-IRVYSWRTLNP 285 (323)
T ss_pred eeeechhhcC--CcC-CCccccceeeeeccccCcccccceEEecCCCccceEEccCCcEEeecccCCc-EEEEEeccCCc
Confidence 7777654433 222 445556666555432 12223334567899999999999999999999 99999999999
Q ss_pred EEEeecCCCCcceEEEEecCCCCEEEEEcCCCcEEEEEc
Q 018248 214 LQEMRRGAERAEIYSLAFSSNAQWLAASSDKGTVHVFGL 252 (359)
Q Consensus 214 ~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~ 252 (359)
+..++. |.+.|++++|+|+...+|+++.|++|-+|++
T Consensus 286 LAVLky--Hsagvn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 286 LAVLKY--HSAGVNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred hhhhhh--hhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence 999987 7799999999999999999999999999986
No 209
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.72 E-value=8.7e-15 Score=127.16 Aligned_cols=186 Identities=15% Similarity=0.106 Sum_probs=121.3
Q ss_pred CEEEEEecCCCCCCeEEEEECCCccEEeeeccCcceeEEEEecceeEEE--e----cCeEEEEEcccceeeeeEeccCCC
Q 018248 63 NIICLVNSGPHQSNKVMIWDDHENRYLGELSFRSEVKNVRLRRDRIVVV--L----NQKVYVYNFTDLKLVDQIETVVNP 136 (359)
Q Consensus 63 ~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~--~----d~~i~i~d~~~~~~~~~~~~~~~~ 136 (359)
..+++++... ....|.++|...........+...+.+.+|+|+|+.++ . ...|++||+.+++... +......
T Consensus 164 ~~iayv~~~~-~~~~L~~~D~dG~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~-l~~~~g~ 241 (427)
T PRK02889 164 TRIAYVIKTG-NRYQLQISDADGQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV-VANFKGS 241 (427)
T ss_pred cEEEEEEccC-CccEEEEECCCCCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE-eecCCCC
Confidence 3455555322 24678888864433333334778899999999998776 2 2469999998876543 3333344
Q ss_pred ceeeeeecCCCccEEEecCCCCeeEEEE--ecCCeeeEEeecccccccEEEEccCCcEEEEEeC-CCCeEEEEEc--CCC
Q 018248 137 TGLCDVSQNAGPMVMACPGLLKGQVRVE--DYGTKKSKYITAHASRIASIAMTLDGRFVATASS-KGTLIRVFNT--MDG 211 (359)
Q Consensus 137 ~~~~~~~~~~~~~~l~~~g~~d~~v~~~--~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~-dg~~i~iwd~--~~~ 211 (359)
....+|+|+++.+++. .+.++...+| +..+...+.+..+........|+|||+.|+..+. ++. ..+|.+ .++
T Consensus 242 ~~~~~~SPDG~~la~~--~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~-~~Iy~~~~~~g 318 (427)
T PRK02889 242 NSAPAWSPDGRTLAVA--LSRDGNSQIYTVNADGSGLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGA-PQIYRMPASGG 318 (427)
T ss_pred ccceEECCCCCEEEEE--EccCCCceEEEEECCCCCcEECCCCCCCCcCeEEcCCCCEEEEEecCCCC-cEEEEEECCCC
Confidence 5678999999874443 3356665554 4455556666666666778899999998876654 455 666654 444
Q ss_pred cEEEEeecCCCCcceEEEEecCCCCEEEEEcCCC---cEEEEEccCCC
Q 018248 212 SLLQEMRRGAERAEIYSLAFSSNAQWLAASSDKG---TVHVFGLKVDS 256 (359)
Q Consensus 212 ~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg---~i~iw~~~~~~ 256 (359)
+... +.. ........+|||||++|+..+.++ .|.+||+.+++
T Consensus 319 ~~~~-lt~--~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~ 363 (427)
T PRK02889 319 AAQR-VTF--TGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQ 363 (427)
T ss_pred ceEE-Eec--CCCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCC
Confidence 4322 221 122345678999999998776554 59999998765
No 210
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.72 E-value=1.3e-15 Score=116.77 Aligned_cols=149 Identities=14% Similarity=0.232 Sum_probs=111.4
Q ss_pred eEEEEecceeEEE---e----------cCeEEEEEcc-cceeeeeEecc-CCCceeeeeecCCCccEEEecCCCCeeEEE
Q 018248 99 KNVRLRRDRIVVV---L----------NQKVYVYNFT-DLKLVDQIETV-VNPTGLCDVSQNAGPMVMACPGLLKGQVRV 163 (359)
Q Consensus 99 ~~~~~~~~~~~~~---~----------d~~i~i~d~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~g~~d~~v~~ 163 (359)
..+.|+|+|.+++ . -+...+|.++ .......+... .+++..++|+|+++.++++. |..++.+.+
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~-g~~~~~v~l 87 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIY-GSMPAKVTL 87 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEE-ccCCcccEE
Confidence 3567788877666 1 1234444442 23344455442 34689999999999866665 666789999
Q ss_pred EecCCeeeEEeecccccccEEEEccCCcEEEEEeC---CCCeEEEEEcCCCcEEEEeecCCCCcceEEEEecCCCCEEEE
Q 018248 164 EDYGTKKSKYITAHASRIASIAMTLDGRFVATASS---KGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSNAQWLAA 240 (359)
Q Consensus 164 ~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~---dg~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~ 240 (359)
|+.+.+.+..+. ...++.+.|+|+|++|++++. .|. |.+||.++.+.+..+. | ..++.++|||||++|++
T Consensus 88 yd~~~~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~-l~~wd~~~~~~i~~~~---~-~~~t~~~WsPdGr~~~t 160 (194)
T PF08662_consen 88 YDVKGKKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGD-LEFWDVRKKKKISTFE---H-SDATDVEWSPDGRYLAT 160 (194)
T ss_pred EcCcccEeEeec--CCCceEEEECCCCCEEEEEEccCCCcE-EEEEECCCCEEeeccc---c-CcEEEEEEcCCCCEEEE
Confidence 999877777664 567789999999999999864 467 9999999988887776 3 35789999999999998
Q ss_pred EcC------CCcEEEEEccCC
Q 018248 241 SSD------KGTVHVFGLKVD 255 (359)
Q Consensus 241 ~~~------dg~i~iw~~~~~ 255 (359)
++. |+.++||++...
T Consensus 161 a~t~~r~~~dng~~Iw~~~G~ 181 (194)
T PF08662_consen 161 ATTSPRLRVDNGFKIWSFQGR 181 (194)
T ss_pred EEeccceeccccEEEEEecCe
Confidence 874 678999999643
No 211
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.71 E-value=2.3e-14 Score=125.09 Aligned_cols=218 Identities=10% Similarity=0.026 Sum_probs=149.1
Q ss_pred ceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEECCCccEEeeeccCcceeEEEEecce
Q 018248 28 GFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDDHENRYLGELSFRSEVKNVRLRRDR 107 (359)
Q Consensus 28 ~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~ 107 (359)
.|.++|.+..... .+. .|...+...+|+++++.+++++... .+..|.+||+.+++......+.+.+...+|+|+|
T Consensus 183 ~l~~~d~dg~~~~---~lt-~~~~~v~~p~wSpDG~~lay~s~~~-g~~~i~~~dl~~g~~~~l~~~~g~~~~~~~SPDG 257 (435)
T PRK05137 183 RLAIMDQDGANVR---YLT-DGSSLVLTPRFSPNRQEITYMSYAN-GRPRVYLLDLETGQRELVGNFPGMTFAPRFSPDG 257 (435)
T ss_pred EEEEECCCCCCcE---EEe-cCCCCeEeeEECCCCCEEEEEEecC-CCCEEEEEECCCCcEEEeecCCCcccCcEECCCC
Confidence 5777777643332 121 3577888999999999998887543 3579999999888765444466778889999999
Q ss_pred eEEE----ec--CeEEEEEcccceeeeeEeccCCCceeeeeecCCCccEEEecCCCCeeEEEEecCCeeeEEeecccccc
Q 018248 108 IVVV----LN--QKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAGPMVMACPGLLKGQVRVEDYGTKKSKYITAHASRI 181 (359)
Q Consensus 108 ~~~~----~d--~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~v~~~~~~~~~~~~~~~~~~~i 181 (359)
..++ .+ ..|++||+.+++. ..+..+........|+|+++.+++++.......|++++..+...+.+..+...+
T Consensus 258 ~~la~~~~~~g~~~Iy~~d~~~~~~-~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~lt~~~~~~ 336 (435)
T PRK05137 258 RKVVMSLSQGGNTDIYTMDLRSGTT-TRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRRISFGGGRY 336 (435)
T ss_pred CEEEEEEecCCCceEEEEECCCCce-EEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEEeecCCCcc
Confidence 8665 23 4588889877654 344444444566899999987555442222346777777776666666556667
Q ss_pred cEEEEccCCcEEEEEeCC---CCeEEEEEcCCCcEEEEeecCCCCcceEEEEecCCCCEEEEEcCC------CcEEEEEc
Q 018248 182 ASIAMTLDGRFVATASSK---GTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSNAQWLAASSDK------GTVHVFGL 252 (359)
Q Consensus 182 ~~~~~s~~~~~l~~~~~d---g~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d------g~i~iw~~ 252 (359)
....|+|||+.|+..+.+ .. |.+||+.++. ...+.. ...+..+.|+|||+.|+..+.+ ..+.++++
T Consensus 337 ~~~~~SpdG~~ia~~~~~~~~~~-i~~~d~~~~~-~~~lt~---~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl 411 (435)
T PRK05137 337 STPVWSPRGDLIAFTKQGGGQFS-IGVMKPDGSG-ERILTS---GFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDL 411 (435)
T ss_pred cCeEECCCCCEEEEEEcCCCceE-EEEEECCCCc-eEeccC---CCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEEC
Confidence 788999999999877643 24 8888875554 334432 2246788999999988765543 24677777
Q ss_pred cCCC
Q 018248 253 KVDS 256 (359)
Q Consensus 253 ~~~~ 256 (359)
..+.
T Consensus 412 ~g~~ 415 (435)
T PRK05137 412 TGRN 415 (435)
T ss_pred CCCc
Confidence 6544
No 212
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.71 E-value=7.7e-15 Score=127.92 Aligned_cols=214 Identities=14% Similarity=0.117 Sum_probs=142.1
Q ss_pred ceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEECCCccEEeeeccCcceeEEEEecce
Q 018248 28 GFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDDHENRYLGELSFRSEVKNVRLRRDR 107 (359)
Q Consensus 28 ~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~ 107 (359)
.|.+||.+...... +. .|...+....|+++++.+++++... .+..|.+||+.+++........+.....+|+|+|
T Consensus 185 ~l~i~D~~g~~~~~---lt-~~~~~v~~p~wSpDg~~la~~s~~~-~~~~l~~~dl~~g~~~~l~~~~g~~~~~~~SpDG 259 (433)
T PRK04922 185 ALQVADSDGYNPQT---IL-RSAEPILSPAWSPDGKKLAYVSFER-GRSAIYVQDLATGQRELVASFRGINGAPSFSPDG 259 (433)
T ss_pred EEEEECCCCCCceE---ee-cCCCccccccCCCCCCEEEEEecCC-CCcEEEEEECCCCCEEEeccCCCCccCceECCCC
Confidence 48888886443321 22 3456778889999999998887543 3467999999888765443355556688999999
Q ss_pred eEEE----ec--CeEEEEEcccceeeeeEeccCCCceeeeeecCCCccEEEecCCCCee--EEEEecCCeeeEEeecccc
Q 018248 108 IVVV----LN--QKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAGPMVMACPGLLKGQ--VRVEDYGTKKSKYITAHAS 179 (359)
Q Consensus 108 ~~~~----~d--~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~--v~~~~~~~~~~~~~~~~~~ 179 (359)
..++ .+ ..|++||+.+++. ..+..+.......+|+|+++.+++.+ ..+|. +++++..+...+.+..+..
T Consensus 260 ~~l~~~~s~~g~~~Iy~~d~~~g~~-~~lt~~~~~~~~~~~spDG~~l~f~s--d~~g~~~iy~~dl~~g~~~~lt~~g~ 336 (433)
T PRK04922 260 RRLALTLSRDGNPEIYVMDLGSRQL-TRLTNHFGIDTEPTWAPDGKSIYFTS--DRGGRPQIYRVAASGGSAERLTFQGN 336 (433)
T ss_pred CEEEEEEeCCCCceEEEEECCCCCe-EECccCCCCccceEECCCCCEEEEEE--CCCCCceEEEEECCCCCeEEeecCCC
Confidence 8665 23 3699999987764 33443433445678999988744333 23444 5555555544554444444
Q ss_pred cccEEEEccCCcEEEEEeCCC---CeEEEEEcCCCcEEEEeecCCCCcceEEEEecCCCCEEEEEcCC---CcEEEEEcc
Q 018248 180 RIASIAMTLDGRFVATASSKG---TLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSNAQWLAASSDK---GTVHVFGLK 253 (359)
Q Consensus 180 ~i~~~~~s~~~~~l~~~~~dg---~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d---g~i~iw~~~ 253 (359)
....++|+|||++|+..+.++ . |.+||+.+++.. .+.. ........|+|||++|+..+.+ +.|.++++.
T Consensus 337 ~~~~~~~SpDG~~Ia~~~~~~~~~~-I~v~d~~~g~~~-~Lt~---~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~ 411 (433)
T PRK04922 337 YNARASVSPDGKKIAMVHGSGGQYR-IAVMDLSTGSVR-TLTP---GSLDESPSFAPNGSMVLYATREGGRGVLAAVSTD 411 (433)
T ss_pred CccCEEECCCCCEEEEEECCCCcee-EEEEECCCCCeE-ECCC---CCCCCCceECCCCCEEEEEEecCCceEEEEEECC
Confidence 556789999999998765433 5 899999887765 3432 1234567999999988776653 346777775
Q ss_pred C
Q 018248 254 V 254 (359)
Q Consensus 254 ~ 254 (359)
.
T Consensus 412 g 412 (433)
T PRK04922 412 G 412 (433)
T ss_pred C
Confidence 4
No 213
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.70 E-value=2.2e-15 Score=116.81 Aligned_cols=211 Identities=16% Similarity=0.118 Sum_probs=156.9
Q ss_pred cCcceeEEEEecceeEEE---ecCeEEEEEcccc---eeeeeEeccCCCceeeeeecCCCccEEEecCCCCeeEEEEec-
Q 018248 94 FRSEVKNVRLRRDRIVVV---LNQKVYVYNFTDL---KLVDQIETVVNPTGLCDVSQNAGPMVMACPGLLKGQVRVEDY- 166 (359)
Q Consensus 94 ~~~~v~~~~~~~~~~~~~---~d~~i~i~d~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~v~~~~~- 166 (359)
...+|+|.+|++|+..++ ....|.||..... +..++++.|...++.++|+|..+. |++ ++.|..-++|..
T Consensus 9 ~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snr--Ivt-cs~drnayVw~~~ 85 (361)
T KOG1523|consen 9 LLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNR--IVT-CSHDRNAYVWTQP 85 (361)
T ss_pred ccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCc--eeE-ccCCCCccccccC
Confidence 567899999999998888 6779999988543 577888899999999999999887 665 668999999887
Q ss_pred CC---eeeEEeecccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcEE---EEeecCCCCcceEEEEecCCCCEEEE
Q 018248 167 GT---KKSKYITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLL---QEMRRGAERAEIYSLAFSSNAQWLAA 240 (359)
Q Consensus 167 ~~---~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~~---~~~~~~~~~~~i~~~~~s~~~~~l~~ 240 (359)
.+ ++...+..++...+++.|+|.++.+|+|+.-.. |.||-++...-- +.++ ..+.+.|++++|+|++-+|++
T Consensus 86 ~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~-isVcy~E~ENdWWVsKhik-kPirStv~sldWhpnnVLlaa 163 (361)
T KOG1523|consen 86 SGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARL-ISVCYYEQENDWWVSKHIK-KPIRSTVTSLDWHPNNVLLAA 163 (361)
T ss_pred CCCeeccceeEEEeccceeeEeecCcCceEEeccCccE-EEEEEEecccceehhhhhC-CccccceeeeeccCCcceecc
Confidence 33 455566778899999999999999999999888 999877543311 1122 125678999999999999999
Q ss_pred EcCCCcEEEEEccCCCCCCCCCccccCCCCCccCCCCCceeeeeEeeeecceEEecccc----eeEEeecCCcEEEeeec
Q 018248 241 SSDKGTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSAISSFRFIRGVLPKYFSSKWS----MAQFRLPENVQYLVGFG 316 (359)
Q Consensus 241 ~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~v~~~~~s 316 (359)
|+.|+..+||..--....... .+. -|...-+ +.++....+.+..+.|+
T Consensus 164 Gs~D~k~rVfSayIK~Vdekp-----ap~-----------------------pWgsk~PFG~lm~E~~~~ggwvh~v~fs 215 (361)
T KOG1523|consen 164 GSTDGKCRVFSAYIKGVDEKP-----APT-----------------------PWGSKMPFGQLMSEASSSGGWVHGVLFS 215 (361)
T ss_pred cccCcceeEEEEeeeccccCC-----CCC-----------------------CCccCCcHHHHHHhhccCCCceeeeEeC
Confidence 999999999975332211000 000 0000000 11122345789999999
Q ss_pred ccCCEEEEEecCCeEEEEEeC
Q 018248 317 RQNNTIVIVGLDGSYYKCEFD 337 (359)
Q Consensus 317 ~~~~~l~~~~~dg~i~v~~~~ 337 (359)
|+|..|+-.+.|+.+.+-+-.
T Consensus 216 ~sG~~lawv~Hds~v~~~da~ 236 (361)
T KOG1523|consen 216 PSGNRLAWVGHDSTVSFVDAA 236 (361)
T ss_pred CCCCEeeEecCCCceEEeecC
Confidence 999999999999999876543
No 214
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.70 E-value=4e-15 Score=114.06 Aligned_cols=163 Identities=9% Similarity=0.155 Sum_probs=109.4
Q ss_pred eeeeecCCCccEEEecCC-------CCeeEEE--EecCCeeeEEeec-ccccccEEEEccCCcEEEEE--eCCCCeEEEE
Q 018248 139 LCDVSQNAGPMVMACPGL-------LKGQVRV--EDYGTKKSKYITA-HASRIASIAMTLDGRFVATA--SSKGTLIRVF 206 (359)
Q Consensus 139 ~~~~~~~~~~~~l~~~g~-------~d~~v~~--~~~~~~~~~~~~~-~~~~i~~~~~s~~~~~l~~~--~~dg~~i~iw 206 (359)
.+.|++.|+.+++.+... .-+...+ .+....+...+.- ..++|.+++|+|+|+.+|+. ..+.. |.+|
T Consensus 10 ~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~-v~ly 88 (194)
T PF08662_consen 10 KLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAK-VTLY 88 (194)
T ss_pred EEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcc-cEEE
Confidence 356666666644443210 1122333 3233344444433 34579999999999987654 35677 9999
Q ss_pred EcCCCcEEEEeecCCCCcceEEEEecCCCCEEEEEcC---CCcEEEEEccCCCCCCCCCccccCCCCCccCCCCCceeee
Q 018248 207 NTMDGSLLQEMRRGAERAEIYSLAFSSNAQWLAASSD---KGTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSAISSF 283 (359)
Q Consensus 207 d~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~---dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (359)
|++ ++.+..+. ...++.+.|||+|++|++++. .|.|.+||+++.+...
T Consensus 89 d~~-~~~i~~~~----~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~------------------------ 139 (194)
T PF08662_consen 89 DVK-GKKIFSFG----TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKIS------------------------ 139 (194)
T ss_pred cCc-ccEeEeec----CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEee------------------------
Confidence 986 77777774 257789999999999999874 4679999999655210
Q ss_pred eEeeeecceEEecccceeEEeecCCcEEEeeecccCCEEEEEec------CCeEEEEEeCCCCCCceEEeeeccccC
Q 018248 284 RFIRGVLPKYFSSKWSMAQFRLPENVQYLVGFGRQNNTIVIVGL------DGSYYKCEFDPMKGGEMHQLEHYKFLK 354 (359)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~------dg~i~v~~~~~~~~~~~~~~~~~~~~~ 354 (359)
......+..++|+|||++|++++. |..++||++. |..+......+|.+
T Consensus 140 --------------------~~~~~~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~---G~~l~~~~~~~l~~ 193 (194)
T PF08662_consen 140 --------------------TFEHSDATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQ---GRLLYKKPFDELYQ 193 (194)
T ss_pred --------------------ccccCcEEEEEEcCCCCEEEEEEeccceeccccEEEEEec---CeEeEecchhhhhC
Confidence 011224578999999999999885 7889999985 45555555555543
No 215
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.70 E-value=1.3e-15 Score=119.05 Aligned_cols=186 Identities=15% Similarity=0.215 Sum_probs=139.4
Q ss_pred ecCeEEEEEcccceeeeeEeccCCCceeeeeecCCCccEEEecCCCCeeEEEEecCCe---eeEEeeccc-ccccEEEEc
Q 018248 112 LNQKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAGPMVMACPGLLKGQVRVEDYGTK---KSKYITAHA-SRIASIAMT 187 (359)
Q Consensus 112 ~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~v~~~~~~~~---~~~~~~~~~-~~i~~~~~s 187 (359)
.+|.|++||..+++.+..+++++..++.+.|..+...-.+.+ ++.||.|++|+.+.. .......+. .+..+++.+
T Consensus 48 Sngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s-~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~~ld~n 126 (376)
T KOG1188|consen 48 SNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVIS-CSSDGTVRLWDIRSQAESARISWTQQSGTPFICLDLN 126 (376)
T ss_pred cCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEE-eccCCeEEEEEeecchhhhheeccCCCCCcceEeecc
Confidence 899999999999999999999988888888876422222333 667999999998763 233344444 466777777
Q ss_pred cCCcEEEEEeC----CCCeEEEEEcCCCcE-EEEeecCCCCcceEEEEecC-CCCEEEEEcCCCcEEEEEccCCCCCCCC
Q 018248 188 LDGRFVATASS----KGTLIRVFNTMDGSL-LQEMRRGAERAEIYSLAFSS-NAQWLAASSDKGTVHVFGLKVDSGSPGT 261 (359)
Q Consensus 188 ~~~~~l~~~~~----dg~~i~iwd~~~~~~-~~~~~~~~~~~~i~~~~~s~-~~~~l~~~~~dg~i~iw~~~~~~~~~~~ 261 (359)
-.++.+++|.. +-. |.+||++..+. +..+. ..|...|+++.|+| +.++|++|+.||.|.|||++.......
T Consensus 127 ck~~ii~~GtE~~~s~A~-v~lwDvR~~qq~l~~~~-eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~EeDa- 203 (376)
T KOG1188|consen 127 CKKNIIACGTELTRSDAS-VVLWDVRSEQQLLRQLN-ESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEEDA- 203 (376)
T ss_pred CcCCeEEeccccccCceE-EEEEEeccccchhhhhh-hhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcchhh-
Confidence 67888888864 455 99999998876 65555 34778999999999 457999999999999999988643210
Q ss_pred CccccCCCCCccCCCCCceeeeeEeeeecceEEecccceeEEeecCCcEEEeeecccC-CEEEEEecCCeEEEEEeCCC
Q 018248 262 SKLHSASEPNLSSKNSSAISSFRFIRGVLPKYFSSKWSMAQFRLPENVQYLVGFGRQN-NTIVIVGLDGSYYKCEFDPM 339 (359)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~v~~~~~~ 339 (359)
+...+. +...|..+.|..++ +.|.+.+..+...+|++...
T Consensus 204 ----------------------------L~~viN----------~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~ 244 (376)
T KOG1188|consen 204 ----------------------------LLHVIN----------HGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDG 244 (376)
T ss_pred ----------------------------HHHhhc----------ccceeeeeeeecCCcceEEEEEccCceeEEEccCC
Confidence 111111 12457889998876 56999999999999999763
No 216
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.70 E-value=9.3e-15 Score=126.86 Aligned_cols=219 Identities=16% Similarity=0.097 Sum_probs=147.9
Q ss_pred CCCceEEEEEccCCCEEEEec----CCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEE
Q 018248 5 DPITIHHLALNQDHGCFATGT----ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMI 80 (359)
Q Consensus 5 h~~~v~~~~~s~~g~~l~~~~----d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~i 80 (359)
+...+.+.+|||||+.|+..+ +..+.+|++.+++......+ .+......|+|+++.++++.... .+..|.+
T Consensus 197 ~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~----~~~~~~~~~SPDG~~La~~~~~~-g~~~I~~ 271 (429)
T PRK03629 197 SPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASF----PRHNGAPAFSPDGSKLAFALSKT-GSLNLYV 271 (429)
T ss_pred CCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCC----CCCcCCeEECCCCCEEEEEEcCC-CCcEEEE
Confidence 345788999999999998754 34689999987654433333 23345678999999988875422 2346999
Q ss_pred EECCCccEEeeeccCcceeEEEEecceeEEE--e--cC--eEEEEEcccceeeeeEeccCCCceeeeeecCCCccEEEec
Q 018248 81 WDDHENRYLGELSFRSEVKNVRLRRDRIVVV--L--NQ--KVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAGPMVMACP 154 (359)
Q Consensus 81 wd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~--~--d~--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 154 (359)
||+.+++..+.......+....|+|+|+.++ . ++ .|+++|+.+++. ..+...........|+|+++.++++..
T Consensus 272 ~d~~tg~~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~-~~lt~~~~~~~~~~~SpDG~~Ia~~~~ 350 (429)
T PRK03629 272 MDLASGQIRQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAP-QRITWEGSQNQDADVSSDGKFMVMVSS 350 (429)
T ss_pred EECCCCCEEEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCe-EEeecCCCCccCEEECCCCCEEEEEEc
Confidence 9998887665544556778899999998776 2 33 556667665543 333333334456889999987544432
Q ss_pred CCCCeeEEEEecCCeeeEEeecccccccEEEEccCCcEEEEEeCCCC--eEEEEEcCCCcEEEEeecCCCCcceEEEEec
Q 018248 155 GLLKGQVRVEDYGTKKSKYITAHASRIASIAMTLDGRFVATASSKGT--LIRVFNTMDGSLLQEMRRGAERAEIYSLAFS 232 (359)
Q Consensus 155 g~~d~~v~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~--~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s 232 (359)
......+.+++..+...+.+... .......|+|||+.|+.++.++. .+.++++ +|.....+.. +.+.+...+|+
T Consensus 351 ~~g~~~I~~~dl~~g~~~~Lt~~-~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~-~G~~~~~l~~--~~~~~~~p~Ws 426 (429)
T PRK03629 351 NGGQQHIAKQDLATGGVQVLTDT-FLDETPSIAPNGTMVIYSSSQGMGSVLNLVST-DGRFKARLPA--TDGQVKFPAWS 426 (429)
T ss_pred cCCCceEEEEECCCCCeEEeCCC-CCCCCceECCCCCEEEEEEcCCCceEEEEEEC-CCCCeEECcc--CCCCcCCcccC
Confidence 12234566677766555555532 23457889999999999887764 1566666 5666666765 56778889998
Q ss_pred C
Q 018248 233 S 233 (359)
Q Consensus 233 ~ 233 (359)
|
T Consensus 427 p 427 (429)
T PRK03629 427 P 427 (429)
T ss_pred C
Confidence 7
No 217
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.69 E-value=8e-17 Score=130.62 Aligned_cols=192 Identities=13% Similarity=0.156 Sum_probs=161.6
Q ss_pred eeEEEEeccCCEEEEEecCCCCCCeEEEEECCCccEEeeeccCcceeEEEEecceeEEE--ecCeEEEEEcccceeeeeE
Q 018248 53 TQLVSMLFRSNIICLVNSGPHQSNKVMIWDDHENRYLGELSFRSEVKNVRLRRDRIVVV--LNQKVYVYNFTDLKLVDQI 130 (359)
Q Consensus 53 v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~--~d~~i~i~d~~~~~~~~~~ 130 (359)
...+..+-++..+++.+ ..|.|..+|..++++..++.....|.++.|..+.++++ ....++|||- .|..++.+
T Consensus 132 PY~~~ytrnGrhlllgG----rKGHlAa~Dw~t~~L~~Ei~v~Etv~Dv~~LHneq~~AVAQK~y~yvYD~-~GtElHCl 206 (545)
T KOG1272|consen 132 PYHLDYTRNGRHLLLGG----RKGHLAAFDWVTKKLHFEINVMETVRDVTFLHNEQFFAVAQKKYVYVYDN-NGTELHCL 206 (545)
T ss_pred CeeeeecCCccEEEecC----CccceeeeecccceeeeeeehhhhhhhhhhhcchHHHHhhhhceEEEecC-CCcEEeeh
Confidence 34455666667776665 67999999999999999999889999999998888887 8899999995 67778888
Q ss_pred eccCCCceeeeeecCCCccEEEecCCCCeeEEE-EecCCeeeEEeecccccccEEEEccCCcEEEEEeCCCCeEEEEEcC
Q 018248 131 ETVVNPTGLCDVSQNAGPMVMACPGLLKGQVRV-EDYGTKKSKYITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTM 209 (359)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~v~~-~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~ 209 (359)
+.+. .+.-+.|-|.. ++|++ ++..|.++. +...++.+..+....+.+..++-+|-...+-+|...|+ |.+|...
T Consensus 207 k~~~-~v~rLeFLPyH--fLL~~-~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGt-VSlWSP~ 281 (545)
T KOG1272|consen 207 KRHI-RVARLEFLPYH--FLLVA-ASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGT-VSLWSPN 281 (545)
T ss_pred hhcC-chhhhcccchh--heeee-cccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCce-EEecCCC
Confidence 7654 45667777654 45665 667888887 66677888888888889999999999999999999999 9999998
Q ss_pred CCcEEEEeecCCCCcceEEEEecCCCCEEEEEcCCCcEEEEEccCCC
Q 018248 210 DGSLLQEMRRGAERAEIYSLAFSSNAQWLAASSDKGTVHVFGLKVDS 256 (359)
Q Consensus 210 ~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~ 256 (359)
..+++..+.. |.++|.++++.++|+|++|++.|..++|||++.-.
T Consensus 282 skePLvKiLc--H~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ 326 (545)
T KOG1272|consen 282 SKEPLVKILC--HRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFY 326 (545)
T ss_pred CcchHHHHHh--cCCCcceEEECCCCcEEeecccccceeEeeecccc
Confidence 8888877776 88999999999999999999999999999999865
No 218
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.69 E-value=4.1e-14 Score=122.96 Aligned_cols=205 Identities=12% Similarity=0.086 Sum_probs=131.9
Q ss_pred ceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEECCCccEEeeeccCcceeEEEEecce
Q 018248 28 GFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDDHENRYLGELSFRSEVKNVRLRRDR 107 (359)
Q Consensus 28 ~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~ 107 (359)
.|.++|.+..... ... .+...+...+|+|+++.+++++... ....|.+||+.+++........+.+....|+|||
T Consensus 177 ~L~~~D~dG~~~~--~l~--~~~~~v~~p~wSPDG~~la~~s~~~-~~~~I~~~dl~~g~~~~l~~~~g~~~~~~~SPDG 251 (427)
T PRK02889 177 QLQISDADGQNAQ--SAL--SSPEPIISPAWSPDGTKLAYVSFES-KKPVVYVHDLATGRRRVVANFKGSNSAPAWSPDG 251 (427)
T ss_pred EEEEECCCCCCce--Eec--cCCCCcccceEcCCCCEEEEEEccC-CCcEEEEEECCCCCEEEeecCCCCccceEECCCC
Confidence 4666666432222 111 3567788889999999998887433 3467999999988765443355667789999999
Q ss_pred eEEE----ecCeEEE--EEcccceeeeeEeccCCCceeeeeecCCCccEEEecCCCCeeEEEEe--cCCeeeEEeecccc
Q 018248 108 IVVV----LNQKVYV--YNFTDLKLVDQIETVVNPTGLCDVSQNAGPMVMACPGLLKGQVRVED--YGTKKSKYITAHAS 179 (359)
Q Consensus 108 ~~~~----~d~~i~i--~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~v~~~~--~~~~~~~~~~~~~~ 179 (359)
..++ .++...+ +|+..+. ...+..+........|+|+++.+++.+ ..++...+|. ..+...+.+.....
T Consensus 252 ~~la~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~l~f~s--~~~g~~~Iy~~~~~~g~~~~lt~~g~ 328 (427)
T PRK02889 252 RTLAVALSRDGNSQIYTVNADGSG-LRRLTQSSGIDTEPFFSPDGRSIYFTS--DRGGAPQIYRMPASGGAAQRVTFTGS 328 (427)
T ss_pred CEEEEEEccCCCceEEEEECCCCC-cEECCCCCCCCcCeEEcCCCCEEEEEe--cCCCCcEEEEEECCCCceEEEecCCC
Confidence 7665 4555444 4554443 344443444445678999998754433 2344555543 33333443333334
Q ss_pred cccEEEEccCCcEEEEEeCCC---CeEEEEEcCCCcEEEEeecCCCCcceEEEEecCCCCEEEEEcCCC
Q 018248 180 RIASIAMTLDGRFVATASSKG---TLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSNAQWLAASSDKG 245 (359)
Q Consensus 180 ~i~~~~~s~~~~~l~~~~~dg---~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg 245 (359)
.....+|+|||++|+..+.++ . |.+||+.+++... +... .......|+|||+.|+.++.++
T Consensus 329 ~~~~~~~SpDG~~Ia~~s~~~g~~~-I~v~d~~~g~~~~-lt~~---~~~~~p~~spdg~~l~~~~~~~ 392 (427)
T PRK02889 329 YNTSPRISPDGKLLAYISRVGGAFK-LYVQDLATGQVTA-LTDT---TRDESPSFAPNGRYILYATQQG 392 (427)
T ss_pred CcCceEECCCCCEEEEEEccCCcEE-EEEEECCCCCeEE-ccCC---CCccCceECCCCCEEEEEEecC
Confidence 455789999999998776553 5 8999998887543 3321 2346789999999988777544
No 219
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.68 E-value=1.5e-14 Score=112.86 Aligned_cols=191 Identities=15% Similarity=0.173 Sum_probs=147.5
Q ss_pred EEEEeccCCEEEEEecCCCCCCeEEEEECCCccEEeeeccCcceeEEEEecceeEEE----ecCeEEEEEcccceeeeeE
Q 018248 55 LVSMLFRSNIICLVNSGPHQSNKVMIWDDHENRYLGELSFRSEVKNVRLRRDRIVVV----LNQKVYVYNFTDLKLVDQI 130 (359)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~----~d~~i~i~d~~~~~~~~~~ 130 (359)
..+++|++++++..+ +..+.|-|..+-+..+.+..-+.|.-+.|..+..++. .++.|.+|++...+--..+
T Consensus 13 ~c~fSp~g~yiAs~~-----~yrlviRd~~tlq~~qlf~cldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckI 87 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLS-----RYRLVIRDSETLQLHQLFLCLDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKI 87 (447)
T ss_pred ceeECCCCCeeeeee-----eeEEEEeccchhhHHHHHHHHHHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEe
Confidence 567899999998876 4688888888877777666667788899998887665 8899999999888877888
Q ss_pred eccCCCceeeeeecCCCccEEEecCCCCeeEEEEecCCeeeEEeecccccccEEEEccCCcEEEEEeC------------
Q 018248 131 ETVVNPTGLCDVSQNAGPMVMACPGLLKGQVRVEDYGTKKSKYITAHASRIASIAMTLDGRFVATASS------------ 198 (359)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~v~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~------------ 198 (359)
.....+....+|+|+++.+++. ..-+-.|.+|....+....++-.+..+..++|+|||++.+.++.
T Consensus 88 deg~agls~~~WSPdgrhiL~t--seF~lriTVWSL~t~~~~~~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c 165 (447)
T KOG4497|consen 88 DEGQAGLSSISWSPDGRHILLT--SEFDLRITVWSLNTQKGYLLPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSC 165 (447)
T ss_pred ccCCCcceeeeECCCcceEeee--ecceeEEEEEEeccceeEEecccccCceeEEECCCCceeeeeecccHHHHHHHHhh
Confidence 8778888899999999874443 44677888899998887777766777899999999998886654
Q ss_pred -----------------------CCCeEEEEEcCCCcEEEEeecCCCCcceEEEEecCCCCEEEEEcCCCcEEEEEccCC
Q 018248 199 -----------------------KGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSNAQWLAASSDKGTVHVFGLKVD 255 (359)
Q Consensus 199 -----------------------dg~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~ 255 (359)
||.-+.+||.--.-.+..++. .-.+..++|+|.+++|+.|+.|+.+||.+--+-
T Consensus 166 ~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~aYe~---~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tW 242 (447)
T KOG4497|consen 166 KAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAYER---GLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTW 242 (447)
T ss_pred HHHHHHHhcCCCcccccCceECCCCcEEEEecchhhheeeeeee---ccceeEEEeccccceEEeeccchhhhhhceeee
Confidence 232256666433333334432 247889999999999999999999998665443
No 220
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.67 E-value=2.3e-15 Score=120.90 Aligned_cols=189 Identities=16% Similarity=0.210 Sum_probs=140.4
Q ss_pred EEEEEccCCCEEEEec-CCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEECCCccE
Q 018248 10 HHLALNQDHGCFATGT-ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDDHENRY 88 (359)
Q Consensus 10 ~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~ 88 (359)
.+++|+++|..|++|+ ||.+|||+........... .|...|..+.|++++..++.++ .| ..+||+..++..
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~---~~~~eV~DL~FS~dgk~lasig----~d-~~~VW~~~~g~~ 219 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEI---AHHAEVKDLDFSPDGKFLASIG----AD-SARVWSVNTGAA 219 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhH---hhcCccccceeCCCCcEEEEec----CC-ceEEEEeccCch
Confidence 6899999999999999 9999999977554442222 6889999999999999999988 56 999999999977
Q ss_pred Eeeec---cCcceeEEEEecce-----eEEE---ecCeEEEEEccccee-----eeeEeccCCCceeeeeecCCCccEEE
Q 018248 89 LGELS---FRSEVKNVRLRRDR-----IVVV---LNQKVYVYNFTDLKL-----VDQIETVVNPTGLCDVSQNAGPMVMA 152 (359)
Q Consensus 89 ~~~~~---~~~~v~~~~~~~~~-----~~~~---~d~~i~i~d~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~l~ 152 (359)
+.... .+.....+.|+.++ .+.+ ..+.|..|++..... ..+.......+.+++++.+++. +|
T Consensus 220 ~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf--~A 297 (398)
T KOG0771|consen 220 LARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKF--LA 297 (398)
T ss_pred hhhcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcE--EE
Confidence 77665 33456677887766 2222 556677777632211 1111112346788999998875 55
Q ss_pred ecCCCCeeEEEEec-CCeeeEEe-ecccccccEEEEccCCcEEEEEeCCCCeEEEEEcCC
Q 018248 153 CPGLLKGQVRVEDY-GTKKSKYI-TAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMD 210 (359)
Q Consensus 153 ~~g~~d~~v~~~~~-~~~~~~~~-~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~ 210 (359)
. |+.||.|.|++. +.+.++.. +.|..-|+.+.|+||.+++++.+.+.. +.+..+.-
T Consensus 298 l-GT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~-~~v~~l~v 355 (398)
T KOG0771|consen 298 L-GTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNE-AAVTKLAV 355 (398)
T ss_pred E-eccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCc-eeEEEEee
Confidence 5 668999999554 44554444 579999999999999999999998888 88877643
No 221
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.66 E-value=6.5e-15 Score=124.36 Aligned_cols=178 Identities=15% Similarity=0.169 Sum_probs=132.9
Q ss_pred CCeEEEEECCCc-c----EEeeeccCcceeEEEEec-ceeEEE---ecCeEEEEEcccc-------eeeeeEeccCCCce
Q 018248 75 SNKVMIWDDHEN-R----YLGELSFRSEVKNVRLRR-DRIVVV---LNQKVYVYNFTDL-------KLVDQIETVVNPTG 138 (359)
Q Consensus 75 d~~i~iwd~~~~-~----~~~~~~~~~~v~~~~~~~-~~~~~~---~d~~i~i~d~~~~-------~~~~~~~~~~~~~~ 138 (359)
-|.|-||++... + .+-.+.....|+++.|.| |...++ .||.|++|.+..+ .+...+..|...+.
T Consensus 602 gG~iai~el~~PGrLPDgv~p~l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~ 681 (1012)
T KOG1445|consen 602 GGVIAIYELNEPGRLPDGVMPGLFNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKIT 681 (1012)
T ss_pred CceEEEEEcCCCCCCCcccccccccCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEE
Confidence 499999998753 2 233334567899999998 333333 9999999998543 34566778888899
Q ss_pred eeeeecCCCccEEEecCCCCeeEEEEecCC-eeeEEeecccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcE-EEE
Q 018248 139 LCDVSQNAGPMVMACPGLLKGQVRVEDYGT-KKSKYITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSL-LQE 216 (359)
Q Consensus 139 ~~~~~~~~~~~~l~~~g~~d~~v~~~~~~~-~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~-~~~ 216 (359)
.+.|+|-...+ |++ .+.|-+|++|+... .....+.+|.+.|..++|||+|+.+|+.+.||+ |++|+.++++. +++
T Consensus 682 slRfHPLAadv-La~-asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~-~rVy~Prs~e~pv~E 758 (1012)
T KOG1445|consen 682 SLRFHPLAADV-LAV-ASYDSTIELWDLANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGT-LRVYEPRSREQPVYE 758 (1012)
T ss_pred EEEecchhhhH-hhh-hhccceeeeeehhhhhhhheeccCcCceeEEEECCCCcceeeeecCce-EEEeCCCCCCCcccc
Confidence 99999976653 343 66899999998876 455678999999999999999999999999999 99999887653 333
Q ss_pred eecCCCCcceEEEEecCCCCEEEEEcCCC----cEEEEEccCCC
Q 018248 217 MRRGAERAEIYSLAFSSNAQWLAASSDKG----TVHVFGLKVDS 256 (359)
Q Consensus 217 ~~~~~~~~~i~~~~~s~~~~~l~~~~~dg----~i~iw~~~~~~ 256 (359)
=++. -...--.+.|.-||+++++.+.|. .|.+||.++-.
T Consensus 759 g~gp-vgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l~ 801 (1012)
T KOG1445|consen 759 GKGP-VGTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQTLD 801 (1012)
T ss_pred CCCC-ccCcceeEEEEecCcEEEEecccccchhhhhhhhhhhcc
Confidence 3221 123345678888999998887664 57788776643
No 222
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.66 E-value=9.3e-14 Score=125.63 Aligned_cols=246 Identities=9% Similarity=0.061 Sum_probs=161.1
Q ss_pred CCCCCceEEEEEccCC-CEEEEec-CCceEEEEcCCCcc-----eeeeecccCCCCceeEEEEeccCCEEEEEecCCCCC
Q 018248 3 QPDPITIHHLALNQDH-GCFATGT-ETGFRVYLSDPYKP-----IMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQS 75 (359)
Q Consensus 3 ~~h~~~v~~~~~s~~g-~~l~~~~-d~~i~iw~~~~~~~-----~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d 75 (359)
++|...|..++.++.. .+|++|+ ||+|++|++..... ....++. -....+..+.+.+.++.+++++ .|
T Consensus 1045 ~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys-~~~sr~~~vt~~~~~~~~Av~t----~D 1119 (1431)
T KOG1240|consen 1045 HEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYS-PEGSRVEKVTMCGNGDQFAVST----KD 1119 (1431)
T ss_pred hhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEe-ccCCceEEEEeccCCCeEEEEc----CC
Confidence 4678888889888765 9999999 99999999863211 1112221 1256788888888999999886 79
Q ss_pred CeEEEEECCCc-------cEEeeec--cCcceeEE-EEecc-ee-EEE---ecCeEEEEEcccceeeeeEec--cCCCce
Q 018248 76 NKVMIWDDHEN-------RYLGELS--FRSEVKNV-RLRRD-RI-VVV---LNQKVYVYNFTDLKLVDQIET--VVNPTG 138 (359)
Q Consensus 76 ~~i~iwd~~~~-------~~~~~~~--~~~~v~~~-~~~~~-~~-~~~---~d~~i~i~d~~~~~~~~~~~~--~~~~~~ 138 (359)
|.|.+.++... ...+... ..+.+.++ ++... +. .++ ..+.|..||++....+..++. ..+.++
T Consensus 1120 G~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vT 1199 (1431)
T KOG1240|consen 1120 GSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVT 1199 (1431)
T ss_pred CeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCcccccee
Confidence 99999998752 1122222 23444443 33322 12 222 788999999977666555543 345677
Q ss_pred eeeeecCCCccEEEecCCCCeeEEEEecCCeee-EEe-ecccccccEEEEccCC---cEEEEEe--CCCCeEEEEEcCCC
Q 018248 139 LCDVSQNAGPMVMACPGLLKGQVRVEDYGTKKS-KYI-TAHASRIASIAMTLDG---RFVATAS--SKGTLIRVFNTMDG 211 (359)
Q Consensus 139 ~~~~~~~~~~~~l~~~g~~d~~v~~~~~~~~~~-~~~-~~~~~~i~~~~~s~~~---~~l~~~~--~dg~~i~iwd~~~~ 211 (359)
.++++|.+. +++. |...|.+.+|+.+-+.. ... ..+..+++.+..+|-. ...++++ ..+. |.+|++.+|
T Consensus 1200 Si~idp~~~--Wlvi-Gts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~ne-vs~wn~~~g 1275 (1431)
T KOG1240|consen 1200 SIVIDPWCN--WLVI-GTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNE-VSTWNMETG 1275 (1431)
T ss_pred EEEecCCce--EEEE-ecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCc-eeeeecccC
Confidence 888888776 4555 77899999999986543 222 3445788888877643 3444444 4666 999999998
Q ss_pred cEEEEeecCC-----------------CCcceEEEEecCCCCEEEEEcCCCcEEEEEccCCCC
Q 018248 212 SLLQEMRRGA-----------------ERAEIYSLAFSSNAQWLAASSDKGTVHVFGLKVDSG 257 (359)
Q Consensus 212 ~~~~~~~~~~-----------------~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~ 257 (359)
.....+.... +.-......+..-+..+.+|+.|..|+.||......
T Consensus 1276 ~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p~~ 1338 (1431)
T KOG1240|consen 1276 LRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRPEI 1338 (1431)
T ss_pred cceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCccc
Confidence 7766655420 000111222223345888999999999999988764
No 223
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.66 E-value=1.4e-13 Score=120.30 Aligned_cols=177 Identities=14% Similarity=0.130 Sum_probs=122.6
Q ss_pred CCeEEEEECCCccEEeeeccCcceeEEEEecceeEEE------ecCeEEEEEcccceeeeeEeccCCCceeeeeecCCCc
Q 018248 75 SNKVMIWDDHENRYLGELSFRSEVKNVRLRRDRIVVV------LNQKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAGP 148 (359)
Q Consensus 75 d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~------~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (359)
...|.++|...........+...+....|+|+++.++ ....|++||+.+++... +..........+|+|+++.
T Consensus 169 ~~~l~~~d~~g~~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~-~~~~~~~~~~~~~spDg~~ 247 (417)
T TIGR02800 169 RYELQVADYDGANPQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREK-VASFPGMNGAPAFSPDGSK 247 (417)
T ss_pred cceEEEEcCCCCCCEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCE
Confidence 4578888876544444444666788999999999887 12589999998775433 2333444556889999887
Q ss_pred cEEEecCCCCeeEEEEecCCeeeEEeecccccccEEEEccCCcEEEEEeCCC---CeEEEEEcCCCcEEEEeecCCCCcc
Q 018248 149 MVMACPGLLKGQVRVEDYGTKKSKYITAHASRIASIAMTLDGRFVATASSKG---TLIRVFNTMDGSLLQEMRRGAERAE 225 (359)
Q Consensus 149 ~~l~~~g~~d~~v~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg---~~i~iwd~~~~~~~~~~~~~~~~~~ 225 (359)
+++......+..|++++..+.....+..+........|+|||+.|+..+..+ . |+++|+.+++... +.. +...
T Consensus 248 l~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~-iy~~d~~~~~~~~-l~~--~~~~ 323 (417)
T TIGR02800 248 LAVSLSKDGNPDIYVMDLDGKQLTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQ-IYMMDADGGEVRR-LTF--RGGY 323 (417)
T ss_pred EEEEECCCCCccEEEEECCCCCEEECCCCCCCCCCEEECCCCCEEEEEECCCCCce-EEEEECCCCCEEE-eec--CCCC
Confidence 5544322223457778877766666666666666789999999887765432 4 7788887766443 332 2346
Q ss_pred eEEEEecCCCCEEEEEcCCC---cEEEEEccCCC
Q 018248 226 IYSLAFSSNAQWLAASSDKG---TVHVFGLKVDS 256 (359)
Q Consensus 226 i~~~~~s~~~~~l~~~~~dg---~i~iw~~~~~~ 256 (359)
+..+.|+|+|++|+.++.++ .|.+||+.++.
T Consensus 324 ~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~ 357 (417)
T TIGR02800 324 NASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGG 357 (417)
T ss_pred ccCeEECCCCCEEEEEEccCCceEEEEEeCCCCC
Confidence 67889999999998887765 68888887643
No 224
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.64 E-value=1.3e-12 Score=110.33 Aligned_cols=188 Identities=16% Similarity=0.124 Sum_probs=118.7
Q ss_pred CEEE-Eec-CCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEECCCccEEeeeccCc
Q 018248 19 GCFA-TGT-ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDDHENRYLGELSFRS 96 (359)
Q Consensus 19 ~~l~-~~~-d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~ 96 (359)
++++ +-. ++.|.+.|.++.+....... + ...-..+.++++++++.+++ .|+.|.++|+.+++.+.+++...
T Consensus 6 ~l~~V~~~~~~~v~viD~~t~~~~~~i~~--~-~~~h~~~~~s~Dgr~~yv~~----rdg~vsviD~~~~~~v~~i~~G~ 78 (369)
T PF02239_consen 6 NLFYVVERGSGSVAVIDGATNKVVARIPT--G-GAPHAGLKFSPDGRYLYVAN----RDGTVSVIDLATGKVVATIKVGG 78 (369)
T ss_dssp GEEEEEEGGGTEEEEEETTT-SEEEEEE---S-TTEEEEEE-TT-SSEEEEEE----TTSEEEEEETTSSSEEEEEE-SS
T ss_pred cEEEEEecCCCEEEEEECCCCeEEEEEcC--C-CCceeEEEecCCCCEEEEEc----CCCeEEEEECCcccEEEEEecCC
Confidence 3443 344 89999999998666543332 1 22233456788888888776 68999999999999999999777
Q ss_pred ceeEEEEecceeEEE----ecCeEEEEEcccceeeeeEeccCC-------CceeeeeecCCCccEEEecCCCCeeEEEEe
Q 018248 97 EVKNVRLRRDRIVVV----LNQKVYVYNFTDLKLVDQIETVVN-------PTGLCDVSQNAGPMVMACPGLLKGQVRVED 165 (359)
Q Consensus 97 ~v~~~~~~~~~~~~~----~d~~i~i~d~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~l~~~g~~d~~v~~~~ 165 (359)
...++++++||++++ ..+.+.++|.++.+.++.+..... .+..+..++..... ++. -.+.+.|.+-+
T Consensus 79 ~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~f-Vv~-lkd~~~I~vVd 156 (369)
T PF02239_consen 79 NPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEF-VVN-LKDTGEIWVVD 156 (369)
T ss_dssp EEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEE-EEE-ETTTTEEEEEE
T ss_pred CcceEEEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEE-EEE-EccCCeEEEEE
Confidence 889999999999887 789999999999999988865322 23334445555543 333 23446676644
Q ss_pred cC-CeeeE-EeecccccccEEEEccCCcEEEEEe-CCCCeEEEEEcCCCcEEEE
Q 018248 166 YG-TKKSK-YITAHASRIASIAMTLDGRFVATAS-SKGTLIRVFNTMDGSLLQE 216 (359)
Q Consensus 166 ~~-~~~~~-~~~~~~~~i~~~~~s~~~~~l~~~~-~dg~~i~iwd~~~~~~~~~ 216 (359)
.. ...+. .............|+|++++++++. .... |-++|.++++.+..
T Consensus 157 y~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~-i~viD~~~~k~v~~ 209 (369)
T PF02239_consen 157 YSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNK-IAVIDTKTGKLVAL 209 (369)
T ss_dssp TTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTE-EEEEETTTTEEEEE
T ss_pred eccccccceeeecccccccccccCcccceeeecccccce-eEEEeeccceEEEE
Confidence 32 22222 2222344567889999999877654 4445 88888877765544
No 225
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.63 E-value=6.7e-13 Score=103.18 Aligned_cols=234 Identities=12% Similarity=0.193 Sum_probs=149.9
Q ss_pred EEEeccCCEEEEEecCCCCCCeEEEEECCCccEEeeec-cCc--ceeEEEEecceeEEE--------ecCeEEEEEcccc
Q 018248 56 VSMLFRSNIICLVNSGPHQSNKVMIWDDHENRYLGELS-FRS--EVKNVRLRRDRIVVV--------LNQKVYVYNFTDL 124 (359)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~-~~~--~v~~~~~~~~~~~~~--------~d~~i~i~d~~~~ 124 (359)
++|..+....+++. |.-.+||+.+.-+.....+ +.+ .+..+-|-.+-..++ .-+.+.|||-...
T Consensus 11 vs~NQD~ScFava~-----~~Gfriyn~~P~ke~~~r~~~~~G~~~veMLfR~N~laLVGGg~~pky~pNkviIWDD~k~ 85 (346)
T KOG2111|consen 11 VSFNQDHSCFAVAT-----DTGFRIYNCDPFKESASRQFIDGGFKIVEMLFRSNYLALVGGGSRPKYPPNKVIIWDDLKE 85 (346)
T ss_pred EEEccCCceEEEEe-----cCceEEEecCchhhhhhhccccCchhhhhHhhhhceEEEecCCCCCCCCCceEEEEecccC
Confidence 56655555555544 6778999876533322222 111 122222222222222 3457999996666
Q ss_pred eeeeeEeccCCCceeeeeecCCCccEEEecCCCCeeEEEEecCC--eeeEEeecccccccEEEEcc--CCcEEEEEe-CC
Q 018248 125 KLVDQIETVVNPTGLCDVSQNAGPMVMACPGLLKGQVRVEDYGT--KKSKYITAHASRIASIAMTL--DGRFVATAS-SK 199 (359)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~v~~~~~~~--~~~~~~~~~~~~i~~~~~s~--~~~~l~~~~-~d 199 (359)
+++.++.- ..++..+.+.++ .++++ ..+.|+||.... +.++.+.....+---++..| +..+||.-+ .-
T Consensus 86 ~~i~el~f-~~~I~~V~l~r~--riVvv----l~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~ 158 (346)
T KOG2111|consen 86 RCIIELSF-NSEIKAVKLRRD--RIVVV----LENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKT 158 (346)
T ss_pred cEEEEEEe-ccceeeEEEcCC--eEEEE----ecCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCCcc
Confidence 66666653 456777777654 33333 377899987763 44555543332222334444 344565544 45
Q ss_pred CCeEEEEEcCCCcE--EEEeecCCCCcceEEEEecCCCCEEEEEcCCCc-EEEEEccCCCCCCCCCccccCCCCCccCCC
Q 018248 200 GTLIRVFNTMDGSL--LQEMRRGAERAEIYSLAFSSNAQWLAASSDKGT-VHVFGLKVDSGSPGTSKLHSASEPNLSSKN 276 (359)
Q Consensus 200 g~~i~iwd~~~~~~--~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~-i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (359)
|. |.|-|+...+. ...+.. |.+.|.+++++.+|..+||++..|+ |||||..+++...
T Consensus 159 Gq-vQi~dL~~~~~~~p~~I~A--H~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~----------------- 218 (346)
T KOG2111|consen 159 GQ-VQIVDLASTKPNAPSIINA--HDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQ----------------- 218 (346)
T ss_pred ce-EEEEEhhhcCcCCceEEEc--ccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEee-----------------
Confidence 77 99999876655 345555 8899999999999999999999998 8999999988431
Q ss_pred CCceeeeeEeeeecceEEecccceeEEeecCCcEEEeeecccCCEEEEEecCCeEEEEEeCCCCCCce
Q 018248 277 SSAISSFRFIRGVLPKYFSSKWSMAQFRLPENVQYLVGFGRQNNTIVIVGLDGSYYKCEFDPMKGGEM 344 (359)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~ 344 (359)
.+-++ .....+.+++|||+..+|+++++-|+++||.+.....++.
T Consensus 219 -------E~RRG----------------~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~~~~~~~ 263 (346)
T KOG2111|consen 219 -------ELRRG----------------VDRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRDTENTED 263 (346)
T ss_pred -------eeecC----------------CchheEEEEEeCCCccEEEEEcCCCeEEEEEeecCCCCcc
Confidence 00000 1124689999999999999999999999999987544433
No 226
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.63 E-value=1.3e-11 Score=104.36 Aligned_cols=278 Identities=16% Similarity=0.211 Sum_probs=171.0
Q ss_pred CceEEEEcC--CCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEECCCc--c--EEeeec-cCccee
Q 018248 27 TGFRVYLSD--PYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDDHEN--R--YLGELS-FRSEVK 99 (359)
Q Consensus 27 ~~i~iw~~~--~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~--~--~~~~~~-~~~~v~ 99 (359)
+.|.+|+++ +++......+ .-......++++++++.+..+......++.|..|.+... + .+.... ......
T Consensus 13 ~gI~~~~~d~~~g~l~~~~~~--~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~ 90 (345)
T PF10282_consen 13 GGIYVFRFDEETGTLTLVQTV--AEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPC 90 (345)
T ss_dssp TEEEEEEEETTTTEEEEEEEE--EESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEE
T ss_pred CcEEEEEEcCCCCCceEeeee--cCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcE
Confidence 679999884 4433333322 124556778888888888877653102589999987664 2 333333 455667
Q ss_pred EEEEecceeEEE----ecCeEEEEEccc-ceeeee---Ee--c--------cCCCceeeeeecCCCccEEEecCCCCeeE
Q 018248 100 NVRLRRDRIVVV----LNQKVYVYNFTD-LKLVDQ---IE--T--------VVNPTGLCDVSQNAGPMVMACPGLLKGQV 161 (359)
Q Consensus 100 ~~~~~~~~~~~~----~d~~i~i~d~~~-~~~~~~---~~--~--------~~~~~~~~~~~~~~~~~~l~~~g~~d~~v 161 (359)
.++++|++.+++ .+|.|.++++.. +..... +. + .......+.++|+++.++++--| ...|
T Consensus 91 ~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG--~D~v 168 (345)
T PF10282_consen 91 HIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLG--ADRV 168 (345)
T ss_dssp EEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETT--TTEE
T ss_pred EEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecC--CCEE
Confidence 899999998777 689999999965 443322 11 0 11223568889998876655433 3367
Q ss_pred EEEecCCee--e---EEee-cccccccEEEEccCCcEEEEEeCCCCeEEEEEcC--CCcE--EEEeec---CC-CCcceE
Q 018248 162 RVEDYGTKK--S---KYIT-AHASRIASIAMTLDGRFVATASSKGTLIRVFNTM--DGSL--LQEMRR---GA-ERAEIY 227 (359)
Q Consensus 162 ~~~~~~~~~--~---~~~~-~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~--~~~~--~~~~~~---~~-~~~~i~ 227 (359)
.++..+... + ..+. ......+.++|+|+++++++..+....|.++++. ++.. +..+.. .. ......
T Consensus 169 ~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 248 (345)
T PF10282_consen 169 YVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPA 248 (345)
T ss_dssp EEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEE
T ss_pred EEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCce
Confidence 775544322 2 2222 2345678999999999887776544339999987 4432 222221 11 112678
Q ss_pred EEEecCCCCEEEEEc-CCCcEEEEEccCCCCCCCCCccccCCCCCccCCCCCceeeeeEeeeecceEEecccceeEEeec
Q 018248 228 SLAFSSNAQWLAASS-DKGTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSAISSFRFIRGVLPKYFSSKWSMAQFRLP 306 (359)
Q Consensus 228 ~~~~s~~~~~l~~~~-~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (359)
.++++|||++|.++. ..+.|.+|+++..... +..+.. +...
T Consensus 249 ~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~------------------------l~~~~~--------------~~~~ 290 (345)
T PF10282_consen 249 EIAISPDGRFLYVSNRGSNSISVFDLDPATGT------------------------LTLVQT--------------VPTG 290 (345)
T ss_dssp EEEE-TTSSEEEEEECTTTEEEEEEECTTTTT------------------------EEEEEE--------------EEES
T ss_pred eEEEecCCCEEEEEeccCCEEEEEEEecCCCc------------------------eEEEEE--------------EeCC
Confidence 999999999987765 5568999999543211 111110 1112
Q ss_pred CCcEEEeeecccCCEEEEEec-CCeEEEEEeCCCCCCceEEe
Q 018248 307 ENVQYLVGFGRQNNTIVIVGL-DGSYYKCEFDPMKGGEMHQL 347 (359)
Q Consensus 307 ~~~v~~~~~s~~~~~l~~~~~-dg~i~v~~~~~~~~~~~~~~ 347 (359)
....+.++|+|+|++|+++.. ++.|.+|+++.++ |.+...
T Consensus 291 G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~t-G~l~~~ 331 (345)
T PF10282_consen 291 GKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDPDT-GKLTPV 331 (345)
T ss_dssp SSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTT-TEEEEE
T ss_pred CCCccEEEEeCCCCEEEEEecCCCeEEEEEEeCCC-CcEEEe
Confidence 234678999999999999886 7799999998765 445443
No 227
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.62 E-value=4.2e-13 Score=105.44 Aligned_cols=244 Identities=13% Similarity=0.217 Sum_probs=160.3
Q ss_pred CCceEEEEEccCCCEEEEec-CCceEEEEcCCCc---ceeeeecccCC------------CCceeEEEEeccCCE--EEE
Q 018248 6 PITIHHLALNQDHGCFATGT-ETGFRVYLSDPYK---PIMRRDFDRNP------------RGGTQLVSMLFRSNI--ICL 67 (359)
Q Consensus 6 ~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~---~~~~~~~~~~h------------~~~v~~~~~~~~~~~--~~~ 67 (359)
.+-|.++.|...|.+||+|. +|.|.+|.-+... ..+...++ .| ...+..+.|...++. .++
T Consensus 25 adiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fq-shepEFDYLkSleieEKinkIrw~~~~n~a~FLl 103 (433)
T KOG1354|consen 25 ADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQ-SHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLL 103 (433)
T ss_pred hcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeee-ccCcccchhhhhhhhhhhhhceecCCCCccEEEE
Confidence 45689999999999999999 8999999765322 12222222 23 244667777766654 333
Q ss_pred EecCCCCCCeEEEEECCCcc-----------------------------------EEeeec--cCcceeEEEEecceeEE
Q 018248 68 VNSGPHQSNKVMIWDDHENR-----------------------------------YLGELS--FRSEVKNVRLRRDRIVV 110 (359)
Q Consensus 68 ~~~~~~~d~~i~iwd~~~~~-----------------------------------~~~~~~--~~~~v~~~~~~~~~~~~ 110 (359)
++ .|.+|++|.+.... +.+.+. |...|.++.++.|...+
T Consensus 104 st----NdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~ 179 (433)
T KOG1354|consen 104 ST----NDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETF 179 (433)
T ss_pred ec----CCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceE
Confidence 34 68999999864321 112222 56678999999998777
Q ss_pred E--ecCeEEEEEcccce-ee--eeEecc-----CCCceeeeeecCCCccEEEecCCCCeeEEEEecCCee-----eEEe-
Q 018248 111 V--LNQKVYVYNFTDLK-LV--DQIETV-----VNPTGLCDVSQNAGPMVMACPGLLKGQVRVEDYGTKK-----SKYI- 174 (359)
Q Consensus 111 ~--~d~~i~i~d~~~~~-~~--~~~~~~-----~~~~~~~~~~~~~~~~~l~~~g~~d~~v~~~~~~~~~-----~~~~- 174 (359)
. .|=.|.+|+++-.. .. ..++++ ..-++...|+|..-..+ ++ .+..|+|++-+++... .+.+
T Consensus 180 lSADdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f-~Y-SSSKGtIrLcDmR~~aLCd~hsKlfE 257 (433)
T KOG1354|consen 180 LSADDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVF-VY-SSSKGTIRLCDMRQSALCDAHSKLFE 257 (433)
T ss_pred eeccceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEE-EE-ecCCCcEEEeechhhhhhcchhhhhc
Confidence 7 77899999984322 11 112221 22356678888876644 44 3468999996555211 1111
Q ss_pred -----------ecccccccEEEEccCCcEEEEEeCCCCeEEEEEcC-CCcEEEEeecCCC----------Ccc---eEEE
Q 018248 175 -----------TAHASRIASIAMTLDGRFVATASSKGTLIRVFNTM-DGSLLQEMRRGAE----------RAE---IYSL 229 (359)
Q Consensus 175 -----------~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~-~~~~~~~~~~~~~----------~~~---i~~~ 229 (359)
..--..|..+.|+++|+|+++-..- + |++||+. ..+++.++..+.. ... -..+
T Consensus 258 epedp~~rsffseiIsSISDvKFs~sGryilsRDyl-t-vk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec 335 (433)
T KOG1354|consen 258 EPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDYL-T-VKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFEC 335 (433)
T ss_pred cccCCcchhhHHHHhhhhhceEEccCCcEEEEeccc-e-eEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEE
Confidence 1223468899999999999886544 4 9999994 4556666554211 112 2457
Q ss_pred EecCCCCEEEEEcCCCcEEEEEccCCCCC
Q 018248 230 AFSSNAQWLAASSDKGTVHVFGLKVDSGS 258 (359)
Q Consensus 230 ~~s~~~~~l~~~~~dg~i~iw~~~~~~~~ 258 (359)
+|+.++.+++||+.....+++++..+...
T Consensus 336 ~~sg~~~~v~TGsy~n~frvf~~~~gsk~ 364 (433)
T KOG1354|consen 336 SWSGNDSYVMTGSYNNVFRVFNLARGSKE 364 (433)
T ss_pred EEcCCcceEecccccceEEEecCCCCcce
Confidence 89999999999999999999997766543
No 228
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.61 E-value=2.3e-13 Score=108.49 Aligned_cols=244 Identities=16% Similarity=0.175 Sum_probs=165.1
Q ss_pred CCceEEEEEccCCC--EEEEec-CCceEEEEcCCCcceeee-ecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEE
Q 018248 6 PITIHHLALNQDHG--CFATGT-ETGFRVYLSDPYKPIMRR-DFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIW 81 (359)
Q Consensus 6 ~~~v~~~~~s~~g~--~l~~~~-d~~i~iw~~~~~~~~~~~-~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iw 81 (359)
...|..++|.-|++ .+...+ +..+..+..+........ .+..-|-+.-.+..+......++++. .+|.+.+|
T Consensus 55 ~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~dg~Litc~----~sG~l~~~ 130 (412)
T KOG3881|consen 55 LDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLADGTLITCV----SSGNLQVR 130 (412)
T ss_pred hhhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhcCCEEEEEe----cCCcEEEE
Confidence 45677888876654 444443 666666666543322111 00001112222223333345555555 57999999
Q ss_pred ECCCc----cEEeeeccCcceeEEEEecceeEEE----ec--CeEEEEEcccceeeeeEeccCC-------Cce--eeee
Q 018248 82 DDHEN----RYLGELSFRSEVKNVRLRRDRIVVV----LN--QKVYVYNFTDLKLVDQIETVVN-------PTG--LCDV 142 (359)
Q Consensus 82 d~~~~----~~~~~~~~~~~v~~~~~~~~~~~~~----~d--~~i~i~d~~~~~~~~~~~~~~~-------~~~--~~~~ 142 (359)
..+.+ ..+..+.....+..+.-++....++ .. ..+.+||++..+.+..-+..++ +++ .+.|
T Consensus 131 ~~k~~d~hss~l~~la~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~F 210 (412)
T KOG3881|consen 131 HDKSGDLHSSKLIKLATGPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRF 210 (412)
T ss_pred eccCCccccccceeeecCCceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeecccee
Confidence 98744 3344445456677777777665555 33 6799999987766555433221 222 3444
Q ss_pred ecCCCccEEEecCCCCeeEEEEecCC--eeeEEeecccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcEEEE-eec
Q 018248 143 SQNAGPMVMACPGLLKGQVRVEDYGT--KKSKYITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQE-MRR 219 (359)
Q Consensus 143 ~~~~~~~~l~~~g~~d~~v~~~~~~~--~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~~~~-~~~ 219 (359)
-+......+|+ +..-+.+++|+... +++..+.-...+++++...|.++++++|...+. +..||++.++.+.. +.+
T Consensus 211 l~g~~~~~fat-~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~-l~~FD~r~~kl~g~~~kg 288 (412)
T KOG3881|consen 211 LEGSPNYKFAT-ITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQ-LAKFDLRGGKLLGCGLKG 288 (412)
T ss_pred cCCCCCceEEE-EecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecccch-hheecccCceeeccccCC
Confidence 44422334554 55788999988764 677778878899999999999999999999999 99999999998887 544
Q ss_pred CCCCcceEEEEecCCCCEEEEEcCCCcEEEEEccCCCC
Q 018248 220 GAERAEIYSLAFSSNAQWLAASSDKGTVHVFGLKVDSG 257 (359)
Q Consensus 220 ~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~ 257 (359)
-.+.|.++..+|.+++|++++-|..|||+|+++.+.
T Consensus 289 --~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkl 324 (412)
T KOG3881|consen 289 --ITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKL 324 (412)
T ss_pred --ccCCcceEEEcCCCceEEeeccceeEEEeecccchh
Confidence 568999999999999999999999999999999653
No 229
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.60 E-value=1.5e-13 Score=122.65 Aligned_cols=244 Identities=17% Similarity=0.254 Sum_probs=163.3
Q ss_pred CCCCceEEEEEcc--CCCEEEEec-CCceEEEEcCCC---cceeeeecc------cCCCCceeEEEEeccCCEEEEEecC
Q 018248 4 PDPITIHHLALNQ--DHGCFATGT-ETGFRVYLSDPY---KPIMRRDFD------RNPRGGTQLVSMLFRSNIICLVNSG 71 (359)
Q Consensus 4 ~h~~~v~~~~~s~--~g~~l~~~~-d~~i~iw~~~~~---~~~~~~~~~------~~h~~~v~~~~~~~~~~~~~~~~~~ 71 (359)
.....|+.+.+-. |..++++|+ ||.|+||+--.. +..+...+. .+-.+.-..++|......+++.+
T Consensus 1107 ~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tG-- 1184 (1387)
T KOG1517|consen 1107 FPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTG-- 1184 (1387)
T ss_pred CCCCccceeeeecccchhheeeeccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecC--
Confidence 3456788888864 556788888 999999974321 112111111 01112123445554445555444
Q ss_pred CCCCCeEEEEECCCccEEeeec--cCcceeEEEEec-ceeEEE---ecCeEEEEEcccce---eeeeEeccCCC--ceee
Q 018248 72 PHQSNKVMIWDDHENRYLGELS--FRSEVKNVRLRR-DRIVVV---LNQKVYVYNFTDLK---LVDQIETVVNP--TGLC 140 (359)
Q Consensus 72 ~~~d~~i~iwd~~~~~~~~~~~--~~~~v~~~~~~~-~~~~~~---~d~~i~i~d~~~~~---~~~~~~~~~~~--~~~~ 140 (359)
.-..|+|||....+.+..+. ....|+++.-+. .|..++ .||.|++||.+... .+...+.|... +.-+
T Consensus 1185 --d~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~ 1262 (1387)
T KOG1517|consen 1185 --DVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHL 1262 (1387)
T ss_pred --CeeEEEEEecccceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeE
Confidence 34899999999988888887 334566665433 345555 99999999986432 34555666655 5556
Q ss_pred eeecCCCccEEEecCCCCeeEEEEecCCeeeE---Eeeccc--c-cccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcEE
Q 018248 141 DVSQNAGPMVMACPGLLKGQVRVEDYGTKKSK---YITAHA--S-RIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLL 214 (359)
Q Consensus 141 ~~~~~~~~~~l~~~g~~d~~v~~~~~~~~~~~---~~~~~~--~-~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~~ 214 (359)
.+.+.|-. -+++ |+.+|.|++|+.+..... .+..|. + ..+++..+++...+|+|+. +. |+||++ .|+.+
T Consensus 1263 slq~~G~~-elvS-gs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~-ikIy~~-~G~~l 1337 (1387)
T KOG1517|consen 1263 SLQRQGLG-ELVS-GSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QL-IKIYSL-SGEQL 1337 (1387)
T ss_pred EeecCCCc-ceee-eccCCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCc-ce-EEEEec-Chhhh
Confidence 66665554 2444 789999999998874222 223332 3 4999999999999999998 77 999997 45544
Q ss_pred EEeecC-----CCCcceEEEEecCCCCEEEEEcCCCcEEEEEccCCC
Q 018248 215 QEMRRG-----AERAEIYSLAFSSNAQWLAASSDKGTVHVFGLKVDS 256 (359)
Q Consensus 215 ~~~~~~-----~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~ 256 (359)
..++.. ...+.+.+++|+|-.-+||+|+.|.+|.||....+.
T Consensus 1338 ~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~k~~ 1384 (1387)
T KOG1517|consen 1338 NIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCEKPR 1384 (1387)
T ss_pred cccccCcccccCcCCCcceeeecchhHhhhhccCCceEEEeecCCcC
Confidence 444321 123578999999999999999999999999887654
No 230
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.59 E-value=1.4e-12 Score=114.10 Aligned_cols=214 Identities=14% Similarity=0.092 Sum_probs=140.9
Q ss_pred ceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEECCCccEEeeeccCcceeEEEEecce
Q 018248 28 GFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDDHENRYLGELSFRSEVKNVRLRRDR 107 (359)
Q Consensus 28 ~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~ 107 (359)
.|.++|.+...... .+ .+...+....|+++++.++++.... ....|++||+.+++......+...+.+++|+|++
T Consensus 171 ~l~~~d~~g~~~~~--l~--~~~~~~~~p~~Spdg~~la~~~~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~spDg 245 (417)
T TIGR02800 171 ELQVADYDGANPQT--IT--RSREPILSPAWSPDGQKLAYVSFES-GKPEIYVQDLATGQREKVASFPGMNGAPAFSPDG 245 (417)
T ss_pred eEEEEcCCCCCCEE--ee--cCCCceecccCCCCCCEEEEEEcCC-CCcEEEEEECCCCCEEEeecCCCCccceEECCCC
Confidence 47777776433322 12 2355677788999999998877433 2468999999988765544466667789999999
Q ss_pred eEEE----e--cCeEEEEEcccceeeeeEeccCCCceeeeeecCCCccEEEecCCCCeeEEEEecCCeeeEEeecccccc
Q 018248 108 IVVV----L--NQKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAGPMVMACPGLLKGQVRVEDYGTKKSKYITAHASRI 181 (359)
Q Consensus 108 ~~~~----~--d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~v~~~~~~~~~~~~~~~~~~~i 181 (359)
+.++ . +..|++||+.+++.. .+..+........|+|+++.+++.+.-.....|++++..+.....+..+....
T Consensus 246 ~~l~~~~~~~~~~~i~~~d~~~~~~~-~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~~l~~~~~~~ 324 (417)
T TIGR02800 246 SKLAVSLSKDGNPDIYVMDLDGKQLT-RLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVRRLTFRGGYN 324 (417)
T ss_pred CEEEEEECCCCCccEEEEECCCCCEE-ECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCCc
Confidence 7665 2 346999998766543 33333333445688898876444431111235666666665556666566677
Q ss_pred cEEEEccCCcEEEEEeCCC---CeEEEEEcCCCcEEEEeecCCCCcceEEEEecCCCCEEEEEcCCC---cEEEEEc
Q 018248 182 ASIAMTLDGRFVATASSKG---TLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSNAQWLAASSDKG---TVHVFGL 252 (359)
Q Consensus 182 ~~~~~s~~~~~l~~~~~dg---~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg---~i~iw~~ 252 (359)
..+.|+|+|++|+.++.++ . |.+||+.++... .+... .......|+|||++|+..+.++ .+.+.+.
T Consensus 325 ~~~~~spdg~~i~~~~~~~~~~~-i~~~d~~~~~~~-~l~~~---~~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~ 396 (417)
T TIGR02800 325 ASPSWSPDGDLIAFVHREGGGFN-IAVMDLDGGGER-VLTDT---GLDESPSFAPNGRMILYATTRGGRGVLGLVST 396 (417)
T ss_pred cCeEECCCCCEEEEEEccCCceE-EEEEeCCCCCeE-EccCC---CCCCCceECCCCCEEEEEEeCCCcEEEEEEEC
Confidence 8899999999998888765 6 889998876543 33321 2334568999999888777654 3444443
No 231
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.59 E-value=1.1e-12 Score=109.55 Aligned_cols=234 Identities=11% Similarity=0.173 Sum_probs=168.3
Q ss_pred EEEEEccCCCEEEEecCCceEEEEcCCCcceeeeecccCCCCceeEEEEeccC--CEEEEEecC-CCCCCeEEEEECCCc
Q 018248 10 HHLALNQDHGCFATGTETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRS--NIICLVNSG-PHQSNKVMIWDDHEN 86 (359)
Q Consensus 10 ~~~~~s~~g~~l~~~~d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~--~~~~~~~~~-~~~d~~i~iwd~~~~ 86 (359)
++..|++|..+.|--..+.+.+|+....+... ..+ |...+....+++.+ ..+++..-+ ......|+||.....
T Consensus 129 W~~qfs~dEsl~arlv~nev~f~~~~~f~~~~-~kl---~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~ 204 (566)
T KOG2315|consen 129 WVPQFSIDESLAARLVSNEVQFYDLGSFKTIQ-HKL---SVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEE 204 (566)
T ss_pred cccccccchhhhhhhhcceEEEEecCCcccee-eee---eccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccc
Confidence 58889988876655558899999998754443 333 57888888888874 334432211 114688999986632
Q ss_pred cEEeee---c-cCcceeEEEEecceeEEE---------------ecCeEEEEEcccceeeeeEeccCCCceeeeeecCCC
Q 018248 87 RYLGEL---S-FRSEVKNVRLRRDRIVVV---------------LNQKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAG 147 (359)
Q Consensus 87 ~~~~~~---~-~~~~v~~~~~~~~~~~~~---------------~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (359)
..-..+ . +...=..+.|++-|.-++ .+.++++++++.......+ ...++|..+.|++++.
T Consensus 205 ~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L-~k~GPVhdv~W~~s~~ 283 (566)
T KOG2315|consen 205 GQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPL-LKEGPVHDVTWSPSGR 283 (566)
T ss_pred cccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEec-CCCCCceEEEECCCCC
Confidence 221111 1 333344577877654332 3457889988743433333 3478999999999999
Q ss_pred ccEEEecCCCCeeEEEEecCCeeeEEeecccccccEEEEccCCcEEEEEeC---CCCeEEEEEcCCCcEEEEeecCCCCc
Q 018248 148 PMVMACPGLLKGQVRVEDYGTKKSKYITAHASRIASIAMTLDGRFVATASS---KGTLIRVFNTMDGSLLQEMRRGAERA 224 (359)
Q Consensus 148 ~~~l~~~g~~d~~v~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~---dg~~i~iwd~~~~~~~~~~~~~~~~~ 224 (359)
.+.+++ |..-..+.+++.++.++..+. .++-+++-|+|.|++|+.++- .|. |.+||..+.+++..+.. .
T Consensus 284 EF~Vvy-GfMPAkvtifnlr~~~v~df~--egpRN~~~fnp~g~ii~lAGFGNL~G~-mEvwDv~n~K~i~~~~a----~ 355 (566)
T KOG2315|consen 284 EFAVVY-GFMPAKVTIFNLRGKPVFDFP--EGPRNTAFFNPHGNIILLAGFGNLPGD-MEVWDVPNRKLIAKFKA----A 355 (566)
T ss_pred EEEEEE-ecccceEEEEcCCCCEeEeCC--CCCccceEECCCCCEEEEeecCCCCCc-eEEEeccchhhcccccc----C
Confidence 877777 888889999999998887764 567789999999999988775 477 99999999888888875 3
Q ss_pred ceEEEEecCCCCEEEEEcC------CCcEEEEEccCCC
Q 018248 225 EIYSLAFSSNAQWLAASSD------KGTVHVFGLKVDS 256 (359)
Q Consensus 225 ~i~~~~~s~~~~~l~~~~~------dg~i~iw~~~~~~ 256 (359)
.-+-+.|+|||++++|++. |+.++||+.....
T Consensus 356 ~tt~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG~~ 393 (566)
T KOG2315|consen 356 NTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTGSL 393 (566)
T ss_pred CceEEEEcCCCcEEEEEeccccEEecCCeEEEEecCce
Confidence 4567899999999998874 5779999997643
No 232
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.58 E-value=2.5e-12 Score=112.21 Aligned_cols=216 Identities=13% Similarity=0.065 Sum_probs=132.1
Q ss_pred ceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEECCCccEEeeeccCcceeEEEEecce
Q 018248 28 GFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDDHENRYLGELSFRSEVKNVRLRRDR 107 (359)
Q Consensus 28 ~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~ 107 (359)
.+.++|.+........ .+...+....|+|+++.+++++... ....|.+||+.+++...............|+|+|
T Consensus 199 ~l~i~d~dG~~~~~l~----~~~~~~~~p~wSPDG~~La~~s~~~-g~~~L~~~dl~tg~~~~lt~~~g~~~~~~wSPDG 273 (448)
T PRK04792 199 QLMIADYDGYNEQMLL----RSPEPLMSPAWSPDGRKLAYVSFEN-RKAEIFVQDIYTQVREKVTSFPGINGAPRFSPDG 273 (448)
T ss_pred EEEEEeCCCCCceEee----cCCCcccCceECCCCCEEEEEEecC-CCcEEEEEECCCCCeEEecCCCCCcCCeeECCCC
Confidence 4566676654333211 2356677889999999998876432 2357999999888754333334445578999999
Q ss_pred eEEE----ecC--eEEEEEcccceeeeeEeccCCCceeeeeecCCCccEEEecCCCCeeEEEEecCCeeeEEeecccccc
Q 018248 108 IVVV----LNQ--KVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAGPMVMACPGLLKGQVRVEDYGTKKSKYITAHASRI 181 (359)
Q Consensus 108 ~~~~----~d~--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~v~~~~~~~~~~~~~~~~~~~i 181 (359)
+.++ .++ .|+++|+.+++. ..+..+.......+|+|+++.+++.+.......|++++..+.....+.......
T Consensus 274 ~~La~~~~~~g~~~Iy~~dl~tg~~-~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~~g~~~ 352 (448)
T PRK04792 274 KKLALVLSKDGQPEIYVVDIATKAL-TRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLTFEGEQN 352 (448)
T ss_pred CEEEEEEeCCCCeEEEEEECCCCCe-EECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEecCCCCC
Confidence 8776 344 588889877654 333333444556789999887544432111234555555544444443333334
Q ss_pred cEEEEccCCcEEEEEeCC-CC-eEEEEEcCCCcEEEEeecCCCCcceEEEEecCCCCEEEEEcCC-Cc--EEEEEcc
Q 018248 182 ASIAMTLDGRFVATASSK-GT-LIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSNAQWLAASSDK-GT--VHVFGLK 253 (359)
Q Consensus 182 ~~~~~s~~~~~l~~~~~d-g~-~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d-g~--i~iw~~~ 253 (359)
...+|+|||++|+..+.+ +. .|.++|+.+++.. .+... .......|+|||+.|+..+.+ +. +++++.+
T Consensus 353 ~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~-~lt~~---~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~~ 425 (448)
T PRK04792 353 LGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQ-VLTST---RLDESPSVAPNGTMVIYSTTYQGKQVLAAVSID 425 (448)
T ss_pred cCeeECCCCCEEEEEEecCCceEEEEEECCCCCeE-EccCC---CCCCCceECCCCCEEEEEEecCCceEEEEEECC
Confidence 567999999988776553 32 1566788777653 33321 122345799999988765543 33 5666654
No 233
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.58 E-value=6.6e-13 Score=114.06 Aligned_cols=289 Identities=13% Similarity=0.159 Sum_probs=195.6
Q ss_pred CCCCCceEEEEEccCCCEEEEec-CCceEEEEcCCCc-------------ceeeeecccCCCCceeEEEEeccCCEEEEE
Q 018248 3 QPDPITIHHLALNQDHGCFATGT-ETGFRVYLSDPYK-------------PIMRRDFDRNPRGGTQLVSMLFRSNIICLV 68 (359)
Q Consensus 3 ~~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~-------------~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~ 68 (359)
-|......|++|+....++|+|+ ||.+++..+.+.. ....+++. ||.+.|..+.|......+...
T Consensus 11 iPnnvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLe-GH~~sV~vvTWNe~~QKLTtS 89 (1189)
T KOG2041|consen 11 IPNNVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLE-GHNASVMVVTWNENNQKLTTS 89 (1189)
T ss_pred CCCCceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhc-cCcceEEEEEecccccccccc
Confidence 46677899999999999999999 9999999886422 12234455 999999998886554444433
Q ss_pred ecCCCCCCeEEEEECCCccEEeeec---cCcceeEEEEecceeEEE---ecCeEEEEEcccceeeeeEeccCCCceeeee
Q 018248 69 NSGPHQSNKVMIWDDHENRYLGELS---FRSEVKNVRLRRDRIVVV---LNQKVYVYNFTDLKLVDQIETVVNPTGLCDV 142 (359)
Q Consensus 69 ~~~~~~d~~i~iwd~~~~~~~~~~~---~~~~v~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~ 142 (359)
. .+|.|.+|-+-.|....++. ..+-|.+++|+.+|..++ .||.|.+=.+. |..+.--+........+.|
T Consensus 90 D----t~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvd-GNRIwgKeLkg~~l~hv~w 164 (1189)
T KOG2041|consen 90 D----TSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVD-GNRIWGKELKGQLLAHVLW 164 (1189)
T ss_pred C----CCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeec-cceecchhcchheccceee
Confidence 3 57999999998887666553 557789999999998777 89998887763 3333222222222345788
Q ss_pred ecCCCccEEEecCCCCeeEEEEecCCeeeEE------------eecccccccEEEEc--------cCCcEEEEEeCCCCe
Q 018248 143 SQNAGPMVMACPGLLKGQVRVEDYGTKKSKY------------ITAHASRIASIAMT--------LDGRFVATASSKGTL 202 (359)
Q Consensus 143 ~~~~~~~~l~~~g~~d~~v~~~~~~~~~~~~------------~~~~~~~i~~~~~s--------~~~~~l~~~~~dg~~ 202 (359)
++|.+..++ +..+|.+.+++..+..... +......|..+.|. ||...|+++...|.
T Consensus 165 s~D~~~~Lf---~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr- 240 (1189)
T KOG2041|consen 165 SEDLEQALF---KKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGR- 240 (1189)
T ss_pred cccHHHHHh---hhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCce-
Confidence 888775333 4468899998877632111 11112235555553 57889999999998
Q ss_pred EEEEEcCCCcEEEEeecCCCCcceEEEEecCCCCEEEEEcCCCcEEEEEccCCCCCCCCCccccCCCCCccCCCCCceee
Q 018248 203 IRVFNTMDGSLLQEMRRGAERAEIYSLAFSSNAQWLAASSDKGTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSAISS 282 (359)
Q Consensus 203 i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (359)
+.|-.-.+......+.. .-.+....|+++|..|+.++.+..- ...+ ....
T Consensus 241 ~QiMR~eND~~Pvv~dt---gm~~vgakWnh~G~vLAvcG~~~da-----~~~~----------------------d~n~ 290 (1189)
T KOG2041|consen 241 MQIMRSENDPEPVVVDT---GMKIVGAKWNHNGAVLAVCGNDSDA-----DEPT----------------------DSNK 290 (1189)
T ss_pred ehhhhhcCCCCCeEEec---ccEeecceecCCCcEEEEccCcccc-----cCcc----------------------ccce
Confidence 88876555544444443 2478999999999999999876421 1111 0011
Q ss_pred eeEeeeecceEEecccceeEEeecCCcEEEeeecccCCEEEEEecCCeEEEEEeCCC
Q 018248 283 FRFIRGVLPKYFSSKWSMAQFRLPENVQYLVGFGRQNNTIVIVGLDGSYYKCEFDPM 339 (359)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~~ 339 (359)
+.|... -...+.+++.|...|++++|...|-.++. ..|+.|++-++.|+
T Consensus 291 v~Fysp-------~G~i~gtlkvpg~~It~lsWEg~gLriA~-AvdsfiyfanIRP~ 339 (1189)
T KOG2041|consen 291 VHFYSP-------YGHIVGTLKVPGSCITGLSWEGTGLRIAI-AVDSFIYFANIRPE 339 (1189)
T ss_pred EEEecc-------chhheEEEecCCceeeeeEEcCCceEEEE-EecceEEEEeeccc
Confidence 111111 12334568888899999999888777664 46888998888886
No 234
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.58 E-value=2.7e-12 Score=112.37 Aligned_cols=215 Identities=11% Similarity=0.067 Sum_probs=136.2
Q ss_pred eEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEECCCccEEeeeccCcceeEEEEeccee
Q 018248 29 FRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDDHENRYLGELSFRSEVKNVRLRRDRI 108 (359)
Q Consensus 29 i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~ 108 (359)
|.++|.+...... .. .+...+....|+++++.+++++... ....|.+||+.+++........+.+....|+|+|+
T Consensus 181 l~~~d~~g~~~~~--l~--~~~~~~~~p~wSpDG~~la~~s~~~-~~~~l~~~~l~~g~~~~l~~~~g~~~~~~~SpDG~ 255 (430)
T PRK00178 181 LQRSDYDGARAVT--LL--QSREPILSPRWSPDGKRIAYVSFEQ-KRPRIFVQNLDTGRREQITNFEGLNGAPAWSPDGS 255 (430)
T ss_pred EEEECCCCCCceE--Ee--cCCCceeeeeECCCCCEEEEEEcCC-CCCEEEEEECCCCCEEEccCCCCCcCCeEECCCCC
Confidence 6666766443321 12 2456778889999999998877432 23579999998887654444455566789999998
Q ss_pred EEE----ecC--eEEEEEcccceeeeeEeccCCCceeeeeecCCCccEEEecCCCCeeEEEEecCCeeeEEeeccccccc
Q 018248 109 VVV----LNQ--KVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAGPMVMACPGLLKGQVRVEDYGTKKSKYITAHASRIA 182 (359)
Q Consensus 109 ~~~----~d~--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~v~~~~~~~~~~~~~~~~~~~i~ 182 (359)
.++ .++ .|++||+.+++.. .+..+........|+|+++.+++.+.......|++++..+.....+........
T Consensus 256 ~la~~~~~~g~~~Iy~~d~~~~~~~-~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~~~~~~~ 334 (430)
T PRK00178 256 KLAFVLSKDGNPEIYVMDLASRQLS-RVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTFVGNYNA 334 (430)
T ss_pred EEEEEEccCCCceEEEEECCCCCeE-EcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCCcc
Confidence 766 233 7899999776543 343344444567899998875444321112356666655544444433233345
Q ss_pred EEEEccCCcEEEEEeCC-C--CeEEEEEcCCCcEEEEeecCCCCcceEEEEecCCCCEEEEEcCC-C--cEEEEEccC
Q 018248 183 SIAMTLDGRFVATASSK-G--TLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSNAQWLAASSDK-G--TVHVFGLKV 254 (359)
Q Consensus 183 ~~~~s~~~~~l~~~~~d-g--~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d-g--~i~iw~~~~ 254 (359)
...|+|||++|+..+.+ + . |.++|+.+++.. .+... .......|+|||+.|+..+.+ + .|.++++..
T Consensus 335 ~~~~Spdg~~i~~~~~~~~~~~-l~~~dl~tg~~~-~lt~~---~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g 407 (430)
T PRK00178 335 RPRLSADGKTLVMVHRQDGNFH-VAAQDLQRGSVR-ILTDT---SLDESPSVAPNGTMLIYATRQQGRGVLMLVSING 407 (430)
T ss_pred ceEECCCCCEEEEEEccCCceE-EEEEECCCCCEE-EccCC---CCCCCceECCCCCEEEEEEecCCceEEEEEECCC
Confidence 67899999998877643 2 4 788998887653 33321 122356899999998776643 3 355666643
No 235
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.57 E-value=1.7e-12 Score=113.23 Aligned_cols=216 Identities=14% Similarity=0.104 Sum_probs=136.0
Q ss_pred CCceEEEEEccCCCEEEEec--CC--ceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEE
Q 018248 6 PITIHHLALNQDHGCFATGT--ET--GFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIW 81 (359)
Q Consensus 6 ~~~v~~~~~s~~g~~l~~~~--d~--~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iw 81 (359)
...+.+..|||||+.|+..+ ++ .|.+||+.+++......+ .+......|+++++.++++.... ....|.++
T Consensus 217 ~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~----~g~~~~~~wSPDG~~La~~~~~~-g~~~Iy~~ 291 (448)
T PRK04792 217 PEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSF----PGINGAPRFSPDGKKLALVLSKD-GQPEIYVV 291 (448)
T ss_pred CCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCC----CCCcCCeeECCCCCEEEEEEeCC-CCeEEEEE
Confidence 45677899999999998775 33 488888887655433333 23334578999999888765422 22458888
Q ss_pred ECCCccEEeeeccCcceeEEEEecceeEEE----ec--CeEEEEEcccceeeeeEeccCCCceeeeeecCCCccEEEecC
Q 018248 82 DDHENRYLGELSFRSEVKNVRLRRDRIVVV----LN--QKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAGPMVMACPG 155 (359)
Q Consensus 82 d~~~~~~~~~~~~~~~v~~~~~~~~~~~~~----~d--~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g 155 (359)
|+.+++......+........|+|+++.++ .+ ..|+++|+.+++... +..........+|+|+++.+++..
T Consensus 292 dl~tg~~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~-Lt~~g~~~~~~~~SpDG~~l~~~~-- 368 (448)
T PRK04792 292 DIATKALTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSR-LTFEGEQNLGGSITPDGRSMIMVN-- 368 (448)
T ss_pred ECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEE-EecCCCCCcCeeECCCCCEEEEEE--
Confidence 988876554433555667889999998776 22 367777887665433 221222223468999998754443
Q ss_pred CCCee--EEEEecCCeeeEEeecccccccEEEEccCCcEEEEEeCCC-C-eEEEEEcCCCcEEEEeecCCCCcceEEEEe
Q 018248 156 LLKGQ--VRVEDYGTKKSKYITAHASRIASIAMTLDGRFVATASSKG-T-LIRVFNTMDGSLLQEMRRGAERAEIYSLAF 231 (359)
Q Consensus 156 ~~d~~--v~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg-~-~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~ 231 (359)
..++. |.+.+..+.....+... .......|+|||+.|+..+.++ . .+++++. +|.....+.. +.+.+...+|
T Consensus 369 ~~~g~~~I~~~dl~~g~~~~lt~~-~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~-~G~~~~~l~~--~~g~~~~p~W 444 (448)
T PRK04792 369 RTNGKFNIARQDLETGAMQVLTST-RLDESPSVAPNGTMVIYSTTYQGKQVLAAVSI-DGRFKARLPA--GQGEVKSPAW 444 (448)
T ss_pred ecCCceEEEEEECCCCCeEEccCC-CCCCCceECCCCCEEEEEEecCCceEEEEEEC-CCCceEECcC--CCCCcCCCcc
Confidence 23443 44455555544444432 2234568999999887765443 2 1666675 5666666654 3456777888
Q ss_pred cC
Q 018248 232 SS 233 (359)
Q Consensus 232 s~ 233 (359)
+|
T Consensus 445 sp 446 (448)
T PRK04792 445 SP 446 (448)
T ss_pred CC
Confidence 87
No 236
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.56 E-value=2.1e-12 Score=113.03 Aligned_cols=218 Identities=14% Similarity=0.092 Sum_probs=138.9
Q ss_pred CCCceEEEEEccCCCEEEEec-C---CceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEE
Q 018248 5 DPITIHHLALNQDHGCFATGT-E---TGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMI 80 (359)
Q Consensus 5 h~~~v~~~~~s~~g~~l~~~~-d---~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~i 80 (359)
+...+...+|+|||+.|+..+ + ..|.+|++++++......+ .+......|+++++.+++..... .+..|.+
T Consensus 197 ~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~----~g~~~~~~~SpDG~~la~~~~~~-g~~~Iy~ 271 (430)
T PRK00178 197 SREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITNF----EGLNGAPAWSPDGSKLAFVLSKD-GNPEIYV 271 (430)
T ss_pred CCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccCC----CCCcCCeEECCCCCEEEEEEccC-CCceEEE
Confidence 456788999999999998766 3 3488889987654432222 33445678999999888765432 2357999
Q ss_pred EECCCccEEeeeccCcceeEEEEecceeEEE--e----cCeEEEEEcccceeeeeEeccCCCceeeeeecCCCccEEEec
Q 018248 81 WDDHENRYLGELSFRSEVKNVRLRRDRIVVV--L----NQKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAGPMVMACP 154 (359)
Q Consensus 81 wd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~--~----d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 154 (359)
||+.+++......+........|+|++..++ . ...|+++++.+++... +...........|+|+++.+++..
T Consensus 272 ~d~~~~~~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~-lt~~~~~~~~~~~Spdg~~i~~~~- 349 (430)
T PRK00178 272 MDLASRQLSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAER-VTFVGNYNARPRLSADGKTLVMVH- 349 (430)
T ss_pred EECCCCCeEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEE-eecCCCCccceEECCCCCEEEEEE-
Confidence 9998877554333555567789999998766 2 2368888887766432 222222234568899998754443
Q ss_pred CCCCe--eEEEEecCCeeeEEeecccccccEEEEccCCcEEEEEeCCC-C-eEEEEEcCCCcEEEEeecCCCCcceEEEE
Q 018248 155 GLLKG--QVRVEDYGTKKSKYITAHASRIASIAMTLDGRFVATASSKG-T-LIRVFNTMDGSLLQEMRRGAERAEIYSLA 230 (359)
Q Consensus 155 g~~d~--~v~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg-~-~i~iwd~~~~~~~~~~~~~~~~~~i~~~~ 230 (359)
..++ .|.+++..+...+.+.. ........|+|||+.++..+.++ . .|.++++. +.....+.. +.+.+...+
T Consensus 350 -~~~~~~~l~~~dl~tg~~~~lt~-~~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~-g~~~~~l~~--~~g~~~~p~ 424 (430)
T PRK00178 350 -RQDGNFHVAAQDLQRGSVRILTD-TSLDESPSVAPNGTMLIYATRQQGRGVLMLVSIN-GRVRLPLPT--AQGEVREPS 424 (430)
T ss_pred -ccCCceEEEEEECCCCCEEEccC-CCCCCCceECCCCCEEEEEEecCCceEEEEEECC-CCceEECcC--CCCCcCCCc
Confidence 2233 45666766655555543 22334678999999888776542 2 16667763 444444543 345677778
Q ss_pred ecCC
Q 018248 231 FSSN 234 (359)
Q Consensus 231 ~s~~ 234 (359)
|+|-
T Consensus 425 ws~~ 428 (430)
T PRK00178 425 WSPY 428 (430)
T ss_pred cCCC
Confidence 8763
No 237
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.56 E-value=5.3e-14 Score=116.94 Aligned_cols=205 Identities=12% Similarity=0.120 Sum_probs=139.0
Q ss_pred CCCCCceEEEEEccCCCEEEEec-CCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEE
Q 018248 3 QPDPITIHHLALNQDHGCFATGT-ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIW 81 (359)
Q Consensus 3 ~~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iw 81 (359)
+.|.+-|.|++|+.||.+|++|+ |-.+.|||.-..+. ...+..||...|.++.|.|..+...++++. .|..|+++
T Consensus 47 ~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~Kl--lhsI~TgHtaNIFsvKFvP~tnnriv~sgA--gDk~i~lf 122 (758)
T KOG1310|consen 47 TGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKL--LHSISTGHTANIFSVKFVPYTNNRIVLSGA--GDKLIKLF 122 (758)
T ss_pred ccccceecceeecCCCCEEeecCCcceEEeecchhcce--eeeeecccccceeEEeeeccCCCeEEEecc--CcceEEEE
Confidence 35899999999999999999999 88899999874333 355555999999999999876554444444 58999999
Q ss_pred ECCCc----------cEEeeec-cCcceeEEEEecceeEEE----ecCeEEEEEccccee----------eeeEeccCCC
Q 018248 82 DDHEN----------RYLGELS-FRSEVKNVRLRRDRIVVV----LNQKVYVYNFTDLKL----------VDQIETVVNP 136 (359)
Q Consensus 82 d~~~~----------~~~~~~~-~~~~v~~~~~~~~~~~~~----~d~~i~i~d~~~~~~----------~~~~~~~~~~ 136 (359)
|+... +....+. |...|..++..|++...+ .||+|+-||++.... +..+....-.
T Consensus 123 dl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~lie 202 (758)
T KOG1310|consen 123 DLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIE 202 (758)
T ss_pred ecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhhe
Confidence 98741 2333344 778888899888873332 999999999965311 1111111223
Q ss_pred ceeeeeecCCCccEEEecCCCCeeEEEEecCC-------------------eeeEEe-eccc--------c---cccEEE
Q 018248 137 TGLCDVSQNAGPMVMACPGLLKGQVRVEDYGT-------------------KKSKYI-TAHA--------S---RIASIA 185 (359)
Q Consensus 137 ~~~~~~~~~~~~~~l~~~g~~d~~v~~~~~~~-------------------~~~~~~-~~~~--------~---~i~~~~ 185 (359)
..++.++|.... +|++ |..|-..++++.+. .+++.+ .+|- . .++-++
T Consensus 203 lk~ltisp~rp~-~laV-GgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~vt 280 (758)
T KOG1310|consen 203 LKCLTISPSRPY-YLAV-GGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTYVT 280 (758)
T ss_pred eeeeeecCCCCc-eEEe-cCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccceeeeEEEE
Confidence 457888888765 4555 66788888877321 012221 1221 1 245678
Q ss_pred EccCCcEEEEEeCCCCeEEEEEcCCCcEE
Q 018248 186 MTLDGRFVATASSKGTLIRVFNTMDGSLL 214 (359)
Q Consensus 186 ~s~~~~~l~~~~~dg~~i~iwd~~~~~~~ 214 (359)
|+|+|..|++.-.... |+++|+..++..
T Consensus 281 fnpNGtElLvs~~gEh-VYlfdvn~~~~~ 308 (758)
T KOG1310|consen 281 FNPNGTELLVSWGGEH-VYLFDVNEDKSP 308 (758)
T ss_pred ECCCCcEEEEeeCCeE-EEEEeecCCCCc
Confidence 9999986655544444 999998766543
No 238
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.56 E-value=1.4e-12 Score=104.38 Aligned_cols=241 Identities=15% Similarity=0.145 Sum_probs=165.6
Q ss_pred CCCCCCCceEEEEEccCCCEEEEec-CCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEE
Q 018248 1 MNQPDPITIHHLALNQDHGCFATGT-ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVM 79 (359)
Q Consensus 1 m~~~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~ 79 (359)
|..+|.+.|.|++|+...+++.+|. +++|.+.|+++.+.+....-. ...+.|..+..+|..+.++.++ .++.|.
T Consensus 100 ~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~HDiEt~qsi~V~~~~-~~~~~VY~m~~~P~DN~~~~~t----~~~~V~ 174 (609)
T KOG4227|consen 100 MEHPHRSNIFSLEFDLENRFLYSGERWGTVIKHDIETKQSIYVANEN-NNRGDVYHMDQHPTDNTLIVVT----RAKLVS 174 (609)
T ss_pred ccCccccceEEEEEccCCeeEecCCCcceeEeeecccceeeeeeccc-CcccceeecccCCCCceEEEEe----cCceEE
Confidence 4567889999999999999999999 999999999987666443311 1234888899999988888888 789999
Q ss_pred EEECCCcc----EEeeeccCcceeEEEEecceeEEE----ecCeEEEEEccccee-eeeE---ecc---CCCceeeeeec
Q 018248 80 IWDDHENR----YLGELSFRSEVKNVRLRRDRIVVV----LNQKVYVYNFTDLKL-VDQI---ETV---VNPTGLCDVSQ 144 (359)
Q Consensus 80 iwd~~~~~----~~~~~~~~~~v~~~~~~~~~~~~~----~d~~i~i~d~~~~~~-~~~~---~~~---~~~~~~~~~~~ 144 (359)
+||....+ ++..-........+.|+|....++ ..+.+-+||++..+. +... .+. ...-....|+|
T Consensus 175 ~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~ 254 (609)
T KOG4227|consen 175 FIDNRDRQNPISLVLPANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSP 254 (609)
T ss_pred EEeccCCCCCCceeeecCCCccceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCC
Confidence 99987654 333333667788999999765444 678899999854332 1111 111 11124567888
Q ss_pred CCCccEEEecCCCCeeEEE-EecCCeeeEEee-ccc-------ccccEEEEccCCcEEEEEeCCCCeEEEEEcCCC----
Q 018248 145 NAGPMVMACPGLLKGQVRV-EDYGTKKSKYIT-AHA-------SRIASIAMTLDGRFVATASSKGTLIRVFNTMDG---- 211 (359)
Q Consensus 145 ~~~~~~l~~~g~~d~~v~~-~~~~~~~~~~~~-~~~-------~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~---- 211 (359)
++..+ ++. ..+..-+ ++.-.+....++ .|. ..+.+++|--|-. +++|+.+-. |++|.+...
T Consensus 255 ~G~Q~-msi---RR~~~P~~~D~~S~R~~V~k~D~N~~GY~N~~T~KS~~F~~D~~-v~tGSD~~~-i~~WklP~~~ds~ 328 (609)
T KOG4227|consen 255 SGNQF-MSI---RRGKCPLYFDFISQRCFVLKSDHNPNGYCNIKTIKSMTFIDDYT-VATGSDHWG-IHIWKLPRANDSY 328 (609)
T ss_pred CCCee-hhh---hccCCCEEeeeecccceeEeccCCCCcceeeeeeeeeeeeccee-eeccCcccc-eEEEecCCCcccc
Confidence 88763 222 2333333 443332222222 222 2466777865544 889999988 999987521
Q ss_pred -------------------cEEEEeecCCCCcceEEEEecCCCCEEEEEcCCCcEEEEEccC
Q 018248 212 -------------------SLLQEMRRGAERAEIYSLAFSSNAQWLAASSDKGTVHVFGLKV 254 (359)
Q Consensus 212 -------------------~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~ 254 (359)
+.+..+++ |.+-++.+.|+|...+|++.+-...++||.--.
T Consensus 329 G~~~IG~~~~~~~~~~~i~~~~~VLrG--HRSv~NQVRF~~H~~~l~SSGVE~~~KlWS~~r 388 (609)
T KOG4227|consen 329 GFTQIGHDEEEMPSEIFIEKELTVLRG--HRSVPNQVRFSQHNNLLVSSGVENSFKLWSDHR 388 (609)
T ss_pred CccccCcchhhCchhheecceeEEEec--ccccccceeecCCcceEeccchhhheecccccc
Confidence 12334555 778899999999999999999999999996543
No 239
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.56 E-value=1.3e-13 Score=114.63 Aligned_cols=234 Identities=15% Similarity=0.187 Sum_probs=156.7
Q ss_pred eeec-cCcceeEEEEecceeEEE---ecCeEEEEEcccceeeeeEe-ccCCCceeeeeecCCCccEEEecCCCCeeEEEE
Q 018248 90 GELS-FRSEVKNVRLRRDRIVVV---LNQKVYVYNFTDLKLVDQIE-TVVNPTGLCDVSQNAGPMVMACPGLLKGQVRVE 164 (359)
Q Consensus 90 ~~~~-~~~~v~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~g~~d~~v~~~ 164 (359)
.++. |.+-|.++.|+.+|.+++ .|-.+.|||.-..++++.+. +|...+.++.|-|.....++++ |..|..|+++
T Consensus 44 ~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~s-gAgDk~i~lf 122 (758)
T KOG1310|consen 44 AELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLS-GAGDKLIKLF 122 (758)
T ss_pred hhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEe-ccCcceEEEE
Confidence 3455 899999999999999999 78899999998888888874 5788899999999887777776 7789999997
Q ss_pred ecCC-----------eeeEEeecccccccEEEEccCC-cEEEEEeCCCCeEEEEEcCCCcE-------EEEee-cCCCCc
Q 018248 165 DYGT-----------KKSKYITAHASRIASIAMTLDG-RFVATASSKGTLIRVFNTMDGSL-------LQEMR-RGAERA 224 (359)
Q Consensus 165 ~~~~-----------~~~~~~~~~~~~i~~~~~s~~~-~~l~~~~~dg~~i~iwd~~~~~~-------~~~~~-~~~~~~ 224 (359)
+.+. .+...+..|...|..++..|++ ..+.++++||+ |+-+|++.... ...+. ....--
T Consensus 123 dl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGt-irQyDiREph~c~p~~~~~~~l~ny~~~li 201 (758)
T KOG1310|consen 123 DLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGT-IRQYDIREPHVCNPDEDCPSILVNYNPQLI 201 (758)
T ss_pred ecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcc-eeeecccCCccCCccccccHHHHHhchhhh
Confidence 7763 2344566789999999999998 68889999999 99999986321 11110 000113
Q ss_pred ceEEEEecCCC-CEEEEEcCCCcEEEEEccCCCCCCCCCccccCCCCCccCCCCCceeeeeEeeeecceEEeccccee-E
Q 018248 225 EIYSLAFSSNA-QWLAASSDKGTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSAISSFRFIRGVLPKYFSSKWSMA-Q 302 (359)
Q Consensus 225 ~i~~~~~s~~~-~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 302 (359)
...++.++|.. .+|++|+.|-..++||.+...+.-........+. ......+ ++|.+..... .
T Consensus 202 elk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~p----------p~~~~cv-----~yf~p~hlkn~~ 266 (758)
T KOG1310|consen 202 ELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCP----------PKDCRCV-----RYFSPGHLKNSQ 266 (758)
T ss_pred eeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCC----------Ccccchh-----heecCccccCcc
Confidence 56788999854 5789999999999999654332211111100000 0000001 1111111000 0
Q ss_pred --EeecCCcEEEeeecccCCEEEEEecCCeEEEEEeCCCC
Q 018248 303 --FRLPENVQYLVGFGRQNNTIVIVGLDGSYYKCEFDPMK 340 (359)
Q Consensus 303 --~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~ 340 (359)
...-.-..+-++|+|+|.-|++.-..-.||++++...+
T Consensus 267 gn~~~~~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~~ 306 (758)
T KOG1310|consen 267 GNLDRYITCCTYVTFNPNGTELLVSWGGEHVYLFDVNEDK 306 (758)
T ss_pred cccccceeeeEEEEECCCCcEEEEeeCCeEEEEEeecCCC
Confidence 00000124567899999888877666789999887643
No 240
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.56 E-value=6e-12 Score=109.00 Aligned_cols=218 Identities=11% Similarity=0.051 Sum_probs=134.3
Q ss_pred ceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEE--EEEecCCCCCCeEEEEECCCccEEeeeccCcceeEEEEec
Q 018248 28 GFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNII--CLVNSGPHQSNKVMIWDDHENRYLGELSFRSEVKNVRLRR 105 (359)
Q Consensus 28 ~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~--~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~ 105 (359)
.|.+.|.+...... +. ........-.|+|+++.+ ++++... ....|.+.++.+++........+.....+|+|
T Consensus 166 ~l~~~d~dG~~~~~---lt-~~~~~~~sP~wSPDG~~~~~~y~S~~~-g~~~I~~~~l~~g~~~~lt~~~g~~~~p~wSP 240 (428)
T PRK01029 166 ELWSVDYDGQNLRP---LT-QEHSLSITPTWMHIGSGFPYLYVSYKL-GVPKIFLGSLENPAGKKILALQGNQLMPTFSP 240 (428)
T ss_pred eEEEEcCCCCCceE---cc-cCCCCcccceEccCCCceEEEEEEccC-CCceEEEEECCCCCceEeecCCCCccceEECC
Confidence 35566665443321 21 123445566899998764 3355432 24678899998886655444566666789999
Q ss_pred ceeEEE--e--cC--e--EEEEEcccc---eeeeeEeccCCCceeeeeecCCCccEEEecCCCCeeEEEEe--cC--Cee
Q 018248 106 DRIVVV--L--NQ--K--VYVYNFTDL---KLVDQIETVVNPTGLCDVSQNAGPMVMACPGLLKGQVRVED--YG--TKK 170 (359)
Q Consensus 106 ~~~~~~--~--d~--~--i~i~d~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~v~~~~--~~--~~~ 170 (359)
||+.++ . +| . +..|++..+ +...............+|+|+++.+++.+ ..+|...+|. .+ +..
T Consensus 241 DG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s--~~~g~~~ly~~~~~~~g~~ 318 (428)
T PRK01029 241 RKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVS--NKDGRPRIYIMQIDPEGQS 318 (428)
T ss_pred CCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEE--CCCCCceEEEEECcccccc
Confidence 998777 3 22 3 344676542 32222222223335678999998744443 2355444443 32 233
Q ss_pred eEEeecccccccEEEEccCCcEEEEEeCC---CCeEEEEEcCCCcEEEEeecCCCCcceEEEEecCCCCEEEEEcC---C
Q 018248 171 SKYITAHASRIASIAMTLDGRFVATASSK---GTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSNAQWLAASSD---K 244 (359)
Q Consensus 171 ~~~~~~~~~~i~~~~~s~~~~~l~~~~~d---g~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~---d 244 (359)
.+.+..+...+....|+|||+.|+..+.+ .. |.+||+.+++...... ....+....|+|||+.|+.... .
T Consensus 319 ~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~-I~v~dl~~g~~~~Lt~---~~~~~~~p~wSpDG~~L~f~~~~~g~ 394 (428)
T PRK01029 319 PRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQ-ICVYDLATGRDYQLTT---SPENKESPSWAIDSLHLVYSAGNSNE 394 (428)
T ss_pred eEEeccCCCCccceeECCCCCEEEEEEcCCCCcE-EEEEECCCCCeEEccC---CCCCccceEECCCCCEEEEEECCCCC
Confidence 45555555677889999999988876543 35 8999998887654332 2235678999999998875432 3
Q ss_pred CcEEEEEccCCC
Q 018248 245 GTVHVFGLKVDS 256 (359)
Q Consensus 245 g~i~iw~~~~~~ 256 (359)
..|.++|+..++
T Consensus 395 ~~L~~vdl~~g~ 406 (428)
T PRK01029 395 SELYLISLITKK 406 (428)
T ss_pred ceEEEEECCCCC
Confidence 458888887765
No 241
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.56 E-value=9.5e-13 Score=104.13 Aligned_cols=194 Identities=12% Similarity=0.148 Sum_probs=134.8
Q ss_pred CcceeEEEEecceeEEE---ecCeEEEEEcccceeeeeEe-ccCCCceeeeeecCCCccEEEecCCCCeeEEEEecCCe-
Q 018248 95 RSEVKNVRLRRDRIVVV---LNQKVYVYNFTDLKLVDQIE-TVVNPTGLCDVSQNAGPMVMACPGLLKGQVRVEDYGTK- 169 (359)
Q Consensus 95 ~~~v~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~g~~d~~v~~~~~~~~- 169 (359)
+..+..++|++.-..++ .|..|++||-.. +....++ .....+.+++|-|.+... ++. |. .+-|.+|..+..
T Consensus 98 ~~dlr~~aWhqH~~~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsase-lav-gC-r~gIciW~~s~tl 173 (445)
T KOG2139|consen 98 EIDLRGVAWHQHIIAFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASE-LAV-GC-RAGICIWSDSRTL 173 (445)
T ss_pred hcceeeEeechhhhhhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcce-eee-ee-cceeEEEEcCccc
Confidence 45678899998654444 899999999755 4444443 245568899999987653 343 44 345777766531
Q ss_pred ----e----------eEEeecccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcEEEEeecCCCCcceEEEEecCCC
Q 018248 170 ----K----------SKYITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSNA 235 (359)
Q Consensus 170 ----~----------~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~ 235 (359)
. +..-.+| .+|++++|.+||..+++++.+...|.|||..++..+..... ..+.+.-+.|||||
T Consensus 174 n~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~--glgg~slLkwSPdg 250 (445)
T KOG2139|consen 174 NANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPK--GLGGFSLLKWSPDG 250 (445)
T ss_pred ccccccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCccccccc--CCCceeeEEEcCCC
Confidence 1 1111233 68999999999999999987655599999999887766543 44688999999999
Q ss_pred CEEEEEcCCCcEEEEEccCCCCCCCCCccccCCCCCccCCCCCceeeeeEeeeecceEEecccceeEEeecCCcEEEeee
Q 018248 236 QWLAASSDKGTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSAISSFRFIRGVLPKYFSSKWSMAQFRLPENVQYLVGF 315 (359)
Q Consensus 236 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 315 (359)
.+|.+++-|+..++|+....-.. .. ..+..+.|....|
T Consensus 251 d~lfaAt~davfrlw~e~q~wt~-------------------------------------er-----w~lgsgrvqtacW 288 (445)
T KOG2139|consen 251 DVLFAATCDAVFRLWQENQSWTK-------------------------------------ER-----WILGSGRVQTACW 288 (445)
T ss_pred CEEEEecccceeeeehhccccee-------------------------------------cc-----eeccCCceeeeee
Confidence 99999999999999966543200 00 1122357788899
Q ss_pred cccCCEEEEEec-CCeEEEEEeC
Q 018248 316 GRQNNTIVIVGL-DGSYYKCEFD 337 (359)
Q Consensus 316 s~~~~~l~~~~~-dg~i~v~~~~ 337 (359)
+|+|++|+.++. .-.+|-..++
T Consensus 289 spcGsfLLf~~sgsp~lysl~f~ 311 (445)
T KOG2139|consen 289 SPCGSFLLFACSGSPRLYSLTFD 311 (445)
T ss_pred cCCCCEEEEEEcCCceEEEEeec
Confidence 999988766554 4445444443
No 242
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.55 E-value=1.2e-11 Score=104.44 Aligned_cols=234 Identities=15% Similarity=0.165 Sum_probs=143.9
Q ss_pred EEEEEccCCCEEEEec-CCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEECCCccE
Q 018248 10 HHLALNQDHGCFATGT-ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDDHENRY 88 (359)
Q Consensus 10 ~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~ 88 (359)
..+.|+|||+++.+++ |+.|.++|+.+.+....... ......+++++++++++.+.. .++.+.++|.++.+.
T Consensus 40 ~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~----G~~~~~i~~s~DG~~~~v~n~---~~~~v~v~D~~tle~ 112 (369)
T PF02239_consen 40 AGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKV----GGNPRGIAVSPDGKYVYVANY---EPGTVSVIDAETLEP 112 (369)
T ss_dssp EEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-----SSEEEEEEE--TTTEEEEEEE---ETTEEEEEETTT--E
T ss_pred eEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEec----CCCcceEEEcCCCCEEEEEec---CCCceeEeccccccc
Confidence 3477999999998888 99999999998876644443 455677899999998877664 469999999999999
Q ss_pred Eeeecc--------CcceeEEEEeccee-EEE---ecCeEEEEEcccceee--eeEeccCCCceeeeeecCCCccEEEec
Q 018248 89 LGELSF--------RSEVKNVRLRRDRI-VVV---LNQKVYVYNFTDLKLV--DQIETVVNPTGLCDVSQNAGPMVMACP 154 (359)
Q Consensus 89 ~~~~~~--------~~~v~~~~~~~~~~-~~~---~d~~i~i~d~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~ 154 (359)
++.+.. ...+..+..+|... +++ ..+.|.+.|..+.+.+ ..+.. .....-..|.|++++++++..
T Consensus 113 v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~-g~~~~D~~~dpdgry~~va~~ 191 (369)
T PF02239_consen 113 VKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKV-GRFPHDGGFDPDGRYFLVAAN 191 (369)
T ss_dssp EEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE---TTEEEEEE-TTSSEEEEEEG
T ss_pred eeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeecc-cccccccccCcccceeeeccc
Confidence 988762 23566777777765 444 4588888887655433 23332 233345677887776555432
Q ss_pred CCCCeeEEEEecCC--------------------------------------------------------eeeEEeeccc
Q 018248 155 GLLKGQVRVEDYGT--------------------------------------------------------KKSKYITAHA 178 (359)
Q Consensus 155 g~~d~~v~~~~~~~--------------------------------------------------------~~~~~~~~~~ 178 (359)
.++.+.+.+... +.++.+....
T Consensus 192 --~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G 269 (369)
T PF02239_consen 192 --GSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQG 269 (369)
T ss_dssp --GGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SS
T ss_pred --ccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccceecccccCCccccchhhcCeEEEEEECCC
Confidence 222333322221 1122222222
Q ss_pred ccccEEEEccCCcEEEEE----eCCCCeEEEEEcCCCcEEEEeecCCCCcceEEEEecCCCCEEEEEcC--CCcEEEEEc
Q 018248 179 SRIASIAMTLDGRFVATA----SSKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSNAQWLAASSD--KGTVHVFGL 252 (359)
Q Consensus 179 ~~i~~~~~s~~~~~l~~~----~~dg~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~--dg~i~iw~~ 252 (359)
.+ .-+..+|+++++.+. ...+. |.++|.++.+.+..+... ....+..+.|++||+.+..+.. ++.|.|||.
T Consensus 270 ~g-lFi~thP~s~~vwvd~~~~~~~~~-v~viD~~tl~~~~~i~~~-~~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~ 346 (369)
T PF02239_consen 270 GG-LFIKTHPDSRYVWVDTFLNPDADT-VQVIDKKTLKVVKTITPG-PGKRVVHMEFNPDGKEVWVSVWDGNGAIVVYDA 346 (369)
T ss_dssp SS---EE--TT-SEEEEE-TT-SSHT--EEEEECCGTEEEE-HHHH-HT--EEEEEE-TTSSEEEEEEE--TTEEEEEET
T ss_pred Cc-ceeecCCCCccEEeeccCCCCCce-EEEEECcCcceeEEEecc-CCCcEeccEECCCCCEEEEEEecCCCEEEEEEC
Confidence 23 566779999999988 34467 999999999888887643 1235899999999997655443 347999999
Q ss_pred cCCC
Q 018248 253 KVDS 256 (359)
Q Consensus 253 ~~~~ 256 (359)
++.+
T Consensus 347 ~Tl~ 350 (369)
T PF02239_consen 347 KTLK 350 (369)
T ss_dssp TTTE
T ss_pred CCcE
Confidence 9976
No 243
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.55 E-value=3.2e-13 Score=112.06 Aligned_cols=194 Identities=11% Similarity=0.131 Sum_probs=127.5
Q ss_pred cCCCEEEEec-CCceEEEEcCCCccee----eeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEECCCccEEe
Q 018248 16 QDHGCFATGT-ETGFRVYLSDPYKPIM----RRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDDHENRYLG 90 (359)
Q Consensus 16 ~~g~~l~~~~-d~~i~iw~~~~~~~~~----~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~ 90 (359)
|++--+.+|- .|.+.+.+....+... .+.+. ...+.++.|.+..+.+++++- .+|.+.+||.+-
T Consensus 183 ~~g~dllIGf~tGqvq~idp~~~~~sklfne~r~i~---ktsvT~ikWvpg~~~~Fl~a~---~sGnlyly~~~~----- 251 (636)
T KOG2394|consen 183 PKGLDLLIGFTTGQVQLIDPINFEVSKLFNEERLIN---KSSVTCIKWVPGSDSLFLVAH---ASGNLYLYDKEI----- 251 (636)
T ss_pred CCCcceEEeeccCceEEecchhhHHHHhhhhccccc---ccceEEEEEEeCCCceEEEEE---ecCceEEeeccc-----
Confidence 5566677777 7888888765421110 11121 467899999998887777765 569999998511
Q ss_pred eeccCcceeEEEEecceeEEEecCeEEEEEc-ccceeeeeEeccCCCceeeeeecCCCccEEEecCCCCeeEEEEecCCe
Q 018248 91 ELSFRSEVKNVRLRRDRIVVVLNQKVYVYNF-TDLKLVDQIETVVNPTGLCDVSQNAGPMVMACPGLLKGQVRVEDYGTK 169 (359)
Q Consensus 91 ~~~~~~~v~~~~~~~~~~~~~~d~~i~i~d~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~v~~~~~~~~ 169 (359)
.....-.+....+++..+. |..|.- .+..++..+......+...+|+||++. ||+ -+.||.++|++....
T Consensus 252 --~~~~t~p~~~~~k~~~~f~----i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~~--LA~-VSqDGfLRvF~fdt~ 322 (636)
T KOG2394|consen 252 --VCGATAPSYQALKDGDQFA----ILTSKSKKTRNPVARWHIGEGSINEFAFSPDGKY--LAT-VSQDGFLRIFDFDTQ 322 (636)
T ss_pred --cccCCCCcccccCCCCeeE----EeeeeccccCCccceeEeccccccceeEcCCCce--EEE-EecCceEEEeeccHH
Confidence 1010011111122222222 111111 112344444444557778899998776 666 458999999887764
Q ss_pred e-eEEeecccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcEEEEeecCCCCcceEEEEec
Q 018248 170 K-SKYITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFS 232 (359)
Q Consensus 170 ~-~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s 232 (359)
. +..++.--+...|++|||||+||++|++|.- |.||.+...+.+..-.+ |.++|..++|.
T Consensus 323 eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDDL-VtVwSf~erRVVARGqG--HkSWVs~VaFD 383 (636)
T KOG2394|consen 323 ELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDL-VTVWSFEERRVVARGQG--HKSWVSVVAFD 383 (636)
T ss_pred HHHHHHHhhccceEEEEEcCCccEEEecCCcce-EEEEEeccceEEEeccc--cccceeeEeec
Confidence 4 3344556678999999999999999999998 99999988888776655 88999999997
No 244
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.55 E-value=1.9e-10 Score=97.28 Aligned_cols=240 Identities=22% Similarity=0.254 Sum_probs=152.6
Q ss_pred ceEEEEEccCCCEEEEec-C----CceEEEEcCCC--cceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEE
Q 018248 8 TIHHLALNQDHGCFATGT-E----TGFRVYLSDPY--KPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMI 80 (359)
Q Consensus 8 ~v~~~~~s~~g~~l~~~~-d----~~i~iw~~~~~--~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~i 80 (359)
....++++|++++|.+.. . +.|..|.++.. +........ ........+++.++++.++++..+ ++.|.+
T Consensus 38 ~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~-~~g~~p~~i~~~~~g~~l~vany~---~g~v~v 113 (345)
T PF10282_consen 38 NPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVP-SGGSSPCHIAVDPDGRFLYVANYG---GGSVSV 113 (345)
T ss_dssp SECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEE-ESSSCEEEEEECTTSSEEEEEETT---TTEEEE
T ss_pred CCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeec-cCCCCcEEEEEecCCCEEEEEEcc---CCeEEE
Confidence 346688999999998776 3 47888888753 333333322 123344567888888888887653 599999
Q ss_pred EECCC-ccEEee---ec-----------cCcceeEEEEecceeEEE----ecCeEEEEEcccce--e--eeeEec-cCCC
Q 018248 81 WDDHE-NRYLGE---LS-----------FRSEVKNVRLRRDRIVVV----LNQKVYVYNFTDLK--L--VDQIET-VVNP 136 (359)
Q Consensus 81 wd~~~-~~~~~~---~~-----------~~~~v~~~~~~~~~~~~~----~d~~i~i~d~~~~~--~--~~~~~~-~~~~ 136 (359)
+++.. +..... +. ......++.++|++++++ ....|.+|++.... . ...+.. ....
T Consensus 114 ~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~G 193 (345)
T PF10282_consen 114 FPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSG 193 (345)
T ss_dssp EEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSS
T ss_pred EEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCC
Confidence 99877 332222 21 124567899999998776 56799999996543 2 222322 2233
Q ss_pred ceeeeeecCCCccEEEecCCCCeeEEEEecC--Ce---eeEEeecc------cccccEEEEccCCcEEEEEeCCCCeEEE
Q 018248 137 TGLCDVSQNAGPMVMACPGLLKGQVRVEDYG--TK---KSKYITAH------ASRIASIAMTLDGRFVATASSKGTLIRV 205 (359)
Q Consensus 137 ~~~~~~~~~~~~~~l~~~g~~d~~v~~~~~~--~~---~~~~~~~~------~~~i~~~~~s~~~~~l~~~~~dg~~i~i 205 (359)
...+.|+|+++..+++. ..++.|.++... .. .+..+... ......++++|||++|+++......|.+
T Consensus 194 PRh~~f~pdg~~~Yv~~--e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~v 271 (345)
T PF10282_consen 194 PRHLAFSPDGKYAYVVN--ELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISV 271 (345)
T ss_dssp EEEEEE-TTSSEEEEEE--TTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEE
T ss_pred CcEEEEcCCcCEEEEec--CCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEE
Confidence 45789999998877764 357778885444 22 22222211 1256789999999999887754433999
Q ss_pred EEcC--CCc--EEEEeecCCCCcceEEEEecCCCCEEEEEc-CCCcEEEEEccCC
Q 018248 206 FNTM--DGS--LLQEMRRGAERAEIYSLAFSSNAQWLAASS-DKGTVHVFGLKVD 255 (359)
Q Consensus 206 wd~~--~~~--~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~dg~i~iw~~~~~ 255 (359)
|++. +++ .+..+.. .......++++|+|++|+++. .++.|.+|+++..
T Consensus 272 f~~d~~~g~l~~~~~~~~--~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~ 324 (345)
T PF10282_consen 272 FDLDPATGTLTLVQTVPT--GGKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDPD 324 (345)
T ss_dssp EEECTTTTTEEEEEEEEE--SSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETT
T ss_pred EEEecCCCceEEEEEEeC--CCCCccEEEEeCCCCEEEEEecCCCeEEEEEEeCC
Confidence 9983 343 3334433 234589999999999998876 5678999998643
No 245
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.54 E-value=9.9e-12 Score=102.74 Aligned_cols=291 Identities=9% Similarity=0.042 Sum_probs=182.8
Q ss_pred CCCceEEEEEccCCCEEEEecCCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCC-----------
Q 018248 5 DPITIHHLALNQDHGCFATGTETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPH----------- 73 (359)
Q Consensus 5 h~~~v~~~~~s~~g~~l~~~~d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~----------- 73 (359)
..-++..++|||.|++|++..-..|.+|........ ..+. ...|..+.++|.++++..-.....
T Consensus 31 ~~~p~~~~~~SP~G~~l~~~~~~~V~~~~g~~~~~l--~~~~---~~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~ 105 (561)
T COG5354 31 ENWPVAYVSESPLGTYLFSEHAAGVECWGGPSKAKL--VRFR---HPDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFT 105 (561)
T ss_pred cCcchhheeecCcchheehhhccceEEccccchhhe--eeee---cCCceecccCcccceeeeeccCCccChhhccCCcc
Confidence 345788999999999999998888999998876633 3332 577888899988888776542211
Q ss_pred CCCeEEEEECCCccEEeeec-cCcc--ee-EEEEecceeEEE--ecCeEEEEEcccceee-eeEec-cCCCceeeeeecC
Q 018248 74 QSNKVMIWDDHENRYLGELS-FRSE--VK-NVRLRRDRIVVV--LNQKVYVYNFTDLKLV-DQIET-VVNPTGLCDVSQN 145 (359)
Q Consensus 74 ~d~~i~iwd~~~~~~~~~~~-~~~~--v~-~~~~~~~~~~~~--~d~~i~i~d~~~~~~~-~~~~~-~~~~~~~~~~~~~ 145 (359)
.++.+.+||+.+|..+..+. ...+ .+ -+.|+-+..+++ ....++|+++ +.... ..+.. ....+....++|.
T Consensus 106 ~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv~~sl~i~e~-t~n~~~~p~~~lr~~gi~dFsisP~ 184 (561)
T COG5354 106 SKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARVVGSSLYIHEI-TDNIEEHPFKNLRPVGILDFSISPE 184 (561)
T ss_pred ccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhhccCeEEEEec-CCccccCchhhccccceeeEEecCC
Confidence 34579999999999999887 3333 44 678888888888 7788999986 22110 00000 0112222333333
Q ss_pred CCccEEEec----CCCCeeE-----------------------------------------------------EEEecCC
Q 018248 146 AGPMVMACP----GLLKGQV-----------------------------------------------------RVEDYGT 168 (359)
Q Consensus 146 ~~~~~l~~~----g~~d~~v-----------------------------------------------------~~~~~~~ 168 (359)
++...+|+- +...+.+ ++...+.
T Consensus 185 ~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e 264 (561)
T COG5354 185 GNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITE 264 (561)
T ss_pred CCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeecccceeccceEEEEeecc
Confidence 222111110 0111222 2222222
Q ss_pred eeeEEeecccccccEEEEccCCcEEEEEe--CCCCeEEEEEcCCCcEEEEeecCCCCcceEEEEecCCCCEEEEEcCC--
Q 018248 169 KKSKYITAHASRIASIAMTLDGRFVATAS--SKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSNAQWLAASSDK-- 244 (359)
Q Consensus 169 ~~~~~~~~~~~~i~~~~~s~~~~~l~~~~--~dg~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d-- 244 (359)
..+.......++|...+|.|.++.+++.+ .+.. +.++|++.. ....+. +..=+.+.|||.+++++.++-|
T Consensus 265 ~~i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~-~s~~~lr~N-l~~~~P----e~~rNT~~fsp~~r~il~agF~nl 338 (561)
T COG5354 265 RSIPVEKDLKDPVHDFTWEPLSSRFAVISGYMPAS-VSVFDLRGN-LRFYFP----EQKRNTIFFSPHERYILFAGFDNL 338 (561)
T ss_pred cccceeccccccceeeeecccCCceeEEecccccc-eeecccccc-eEEecC----CcccccccccCcccEEEEecCCcc
Confidence 22222224467899999999998776655 5667 999998766 444443 2455678899999999998765
Q ss_pred -CcEEEEEccCCCCCCCCCccccCCCCCccCCCCCceeeeeEeeeecceEEecccceeEEeecCCcEEEeeecccCCEEE
Q 018248 245 -GTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSAISSFRFIRGVLPKYFSSKWSMAQFRLPENVQYLVGFGRQNNTIV 323 (359)
Q Consensus 245 -g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 323 (359)
|.+-+||....-.. +. -+. .....-+.|+||++++.
T Consensus 339 ~gni~i~~~~~rf~~---------------------------~~-----~~~-----------~~n~s~~~wspd~qF~~ 375 (561)
T COG5354 339 QGNIEIFDPAGRFKV---------------------------AG-----AFN-----------GLNTSYCDWSPDGQFYD 375 (561)
T ss_pred ccceEEeccCCceEE---------------------------EE-----Eee-----------cCCceEeeccCCceEEE
Confidence 67999998775411 00 011 11234578999999988
Q ss_pred EEec------CCeEEEEEeCCCCCCceEEeeec
Q 018248 324 IVGL------DGSYYKCEFDPMKGGEMHQLEHY 350 (359)
Q Consensus 324 ~~~~------dg~i~v~~~~~~~~~~~~~~~~~ 350 (359)
+... |..+.+|++.-..--++..+.|.
T Consensus 376 ~~~ts~k~~~Dn~i~l~~v~g~~~fel~~~~W~ 408 (561)
T COG5354 376 TDTTSEKLRVDNSIKLWDVYGAKVFELTNITWD 408 (561)
T ss_pred ecCCCcccccCcceEEEEecCchhhhhhhcccc
Confidence 7764 78899999865433333344443
No 246
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.54 E-value=1e-11 Score=103.79 Aligned_cols=278 Identities=12% Similarity=0.202 Sum_probs=178.9
Q ss_pred EEEEEccCCCEEEEecCCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCC-------CCCeEEEEE
Q 018248 10 HHLALNQDHGCFATGTETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPH-------QSNKVMIWD 82 (359)
Q Consensus 10 ~~~~~s~~g~~l~~~~d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~-------~d~~i~iwd 82 (359)
+.+.|||.|+||++-....|.+|--+..... +.|. | ..|..+.++|+.++++..+.... ....++|||
T Consensus 214 tyv~wSP~GTYL~t~Hk~GI~lWGG~~f~r~--~RF~--H-p~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWD 288 (698)
T KOG2314|consen 214 TYVRWSPKGTYLVTFHKQGIALWGGESFDRI--QRFY--H-PGVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWD 288 (698)
T ss_pred eeEEecCCceEEEEEeccceeeecCccHHHH--Hhcc--C-CCceeeecCCccceEEEecCCccccCcccCCCceEEEEE
Confidence 5789999999999998888999987765555 4453 4 56889999999999987764332 236899999
Q ss_pred CCCccEEeeecc---Ccce-eEEEEecceeEEE--ecCeEEEEEcccceeeeeEeccCCCceeeeeecCCCccEEEecCC
Q 018248 83 DHENRYLGELSF---RSEV-KNVRLRRDRIVVV--LNQKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAGPMVMACPGL 156 (359)
Q Consensus 83 ~~~~~~~~~~~~---~~~v-~~~~~~~~~~~~~--~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~ 156 (359)
+.+|...+.+.. +..+ .-+.||.|+++++ ....|.||+..+..++..-...-..+....|+|.+. +||+=.-
T Consensus 289 I~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~sisIyEtpsf~lld~Kslki~gIr~FswsP~~~--llAYwtp 366 (698)
T KOG2314|consen 289 IATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGNSISIYETPSFMLLDKKSLKISGIRDFSWSPTSN--LLAYWTP 366 (698)
T ss_pred ccccchhcceeccCCCccccceEEeccCCceeEEeccceEEEEecCceeeecccccCCccccCcccCCCcc--eEEEEcc
Confidence 999998888862 2223 2468999999999 778999999765444332222334455566777644 3554111
Q ss_pred C--C--eeEEE-EecCCeeeEEeecccccccEEEEccCCcEEEEEeC----------CCCeEEEEEcCCCcE-EEEeecC
Q 018248 157 L--K--GQVRV-EDYGTKKSKYITAHASRIASIAMTLDGRFVATASS----------KGTLIRVFNTMDGSL-LQEMRRG 220 (359)
Q Consensus 157 ~--d--~~v~~-~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~----------dg~~i~iwd~~~~~~-~~~~~~~ 220 (359)
. + ..+.+ -..+.+.++...-+.-.=..+-|..+|.+|+.--. -.. +.|+.++.... +..+.
T Consensus 367 e~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n-~eIfrireKdIpve~ve-- 443 (698)
T KOG2314|consen 367 ETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSN-LEIFRIREKDIPVEVVE-- 443 (698)
T ss_pred cccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEee-EEEEEeeccCCCceeee--
Confidence 1 1 12223 22333444444444444455677788888864311 112 56666655442 22232
Q ss_pred CCCcceEEEEecCCCCEEEEEcC---CCcEEEEEccCCCCCCCCCccccCCCCCccCCCCCceeeeeEeeeecceEEecc
Q 018248 221 AERAEIYSLAFSSNAQWLAASSD---KGTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSAISSFRFIRGVLPKYFSSK 297 (359)
Q Consensus 221 ~~~~~i~~~~~s~~~~~l~~~~~---dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (359)
-...|..++|-|.|..+++-+. ..++.+|.+++....+ .+++ .
T Consensus 444 -lke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~------------------------~lVk-----~---- 489 (698)
T KOG2314|consen 444 -LKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKP------------------------SLVK-----E---- 489 (698)
T ss_pred -cchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCch------------------------hhhh-----h----
Confidence 2357899999999987766543 3568899888532110 0111 1
Q ss_pred cceeEEeecCCcEEEeeecccCCEEEEEec---CCeEEEEEeCC
Q 018248 298 WSMAQFRLPENVQYLVGFGRQNNTIVIVGL---DGSYYKCEFDP 338 (359)
Q Consensus 298 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~---dg~i~v~~~~~ 338 (359)
++.-..+.+.|+|.|++++++.- .|.+..++.+.
T Consensus 490 -------~dk~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~ 526 (698)
T KOG2314|consen 490 -------LDKKFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDY 526 (698)
T ss_pred -------hcccccceEEEcCCCcEEEEEEecccccceEEEecch
Confidence 11224477999999999888765 68899888774
No 247
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.53 E-value=1.2e-12 Score=116.71 Aligned_cols=194 Identities=16% Similarity=0.209 Sum_probs=142.4
Q ss_pred ceeEEEEecceeEEE---ecCeEEEEEcccceeeeeEeccCCCc--eeeeeecCCCccEEEecCCCCeeEEEEecCCeee
Q 018248 97 EVKNVRLRRDRIVVV---LNQKVYVYNFTDLKLVDQIETVVNPT--GLCDVSQNAGPMVMACPGLLKGQVRVEDYGTKKS 171 (359)
Q Consensus 97 ~v~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~g~~d~~v~~~~~~~~~~ 171 (359)
.|....+..+...++ .++.+.+||...+.....+....... .++-+-...+..++++ |+.-+.|.+|.......
T Consensus 89 wi~g~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~-gsv~~~iivW~~~~dn~ 167 (967)
T KOG0974|consen 89 WIFGAKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIAS-GSVFGEIIVWKPHEDNK 167 (967)
T ss_pred cccccchhhhcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEe-ccccccEEEEeccccCC
Confidence 333333333443333 88899999988777766654433211 1122233445566776 77889999987764332
Q ss_pred E-EeecccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcEEE-EeecCCCCcceEEEEecCCCCEEEEEcCCCcEEE
Q 018248 172 K-YITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQ-EMRRGAERAEIYSLAFSSNAQWLAASSDKGTVHV 249 (359)
Q Consensus 172 ~-~~~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~~~-~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i 249 (359)
. .+.+|.+.|.++.++.||+++++.|+|.+ +++|++.+.+... ..-+ |.+.|+.+.|.|+ .+++++.|.+.++
T Consensus 168 p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRs-iRlW~i~s~~~~~~~~fg--HsaRvw~~~~~~n--~i~t~gedctcrv 242 (967)
T KOG0974|consen 168 PIRLKGHEGSIFSIVTSLDGRYIASVSDDRS-IRLWPIDSREVLGCTGFG--HSARVWACCFLPN--RIITVGEDCTCRV 242 (967)
T ss_pred cceecccCCceEEEEEccCCcEEEEEecCcc-eeeeecccccccCccccc--ccceeEEEEeccc--eeEEeccceEEEE
Confidence 2 58899999999999999999999999999 9999999988776 3333 8899999999998 9999999999999
Q ss_pred EEccCCCCCCCCCccccCCCCCccCCCCCceeeeeEeeeecceEEecccceeEEeec-CCcEEEeeecccCCEEEEEecC
Q 018248 250 FGLKVDSGSPGTSKLHSASEPNLSSKNSSAISSFRFIRGVLPKYFSSKWSMAQFRLP-ENVQYLVGFGRQNNTIVIVGLD 328 (359)
Q Consensus 250 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~~~d 328 (359)
|+.+-.+ +.. ++.| ...+..++..++...+++++.|
T Consensus 243 W~~~~~~---------------------------------l~~----------y~~h~g~~iw~~~~~~~~~~~vT~g~D 279 (967)
T KOG0974|consen 243 WGVNGTQ---------------------------------LEV----------YDEHSGKGIWKIAVPIGVIIKVTGGND 279 (967)
T ss_pred Eecccce---------------------------------ehh----------hhhhhhcceeEEEEcCCceEEEeeccC
Confidence 9665433 110 1112 2467889999999999999999
Q ss_pred CeEEEEEeCCC
Q 018248 329 GSYYKCEFDPM 339 (359)
Q Consensus 329 g~i~v~~~~~~ 339 (359)
|.+++|++...
T Consensus 280 s~lk~~~l~~r 290 (967)
T KOG0974|consen 280 STLKLWDLNGR 290 (967)
T ss_pred cchhhhhhhcc
Confidence 99999987654
No 248
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.53 E-value=4.6e-10 Score=92.82 Aligned_cols=265 Identities=12% Similarity=0.097 Sum_probs=162.7
Q ss_pred CCCEEEEec-C-----CceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEec-------CCCCCCeEEEEEC
Q 018248 17 DHGCFATGT-E-----TGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNS-------GPHQSNKVMIWDD 83 (359)
Q Consensus 17 ~g~~l~~~~-d-----~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~-------~~~~d~~i~iwd~ 83 (359)
++..+.+.. . +.|.+.|.++.+.+-.... |... ..+ ++++++.+.++.. |. .+..|.+||.
T Consensus 11 ~~~~v~V~d~~~~~~~~~v~ViD~~~~~v~g~i~~--G~~P--~~~-~spDg~~lyva~~~~~R~~~G~-~~d~V~v~D~ 84 (352)
T TIGR02658 11 DARRVYVLDPGHFAATTQVYTIDGEAGRVLGMTDG--GFLP--NPV-VASDGSFFAHASTVYSRIARGK-RTDYVEVIDP 84 (352)
T ss_pred CCCEEEEECCcccccCceEEEEECCCCEEEEEEEc--cCCC--cee-ECCCCCEEEEEeccccccccCC-CCCEEEEEEC
Confidence 445554444 3 7899999998765543333 2222 223 8899888887775 11 3689999999
Q ss_pred CCccEEeeeccCcc--------eeEEEEecceeEEE----e-cCeEEEEEcccceeeeeEeccCCCceeeeeecCCCccE
Q 018248 84 HENRYLGELSFRSE--------VKNVRLRRDRIVVV----L-NQKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAGPMV 150 (359)
Q Consensus 84 ~~~~~~~~~~~~~~--------v~~~~~~~~~~~~~----~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (359)
.+.+.+.++..+.. ...++++|+|++++ . +..|.+.|+.+++.+..+..... ...... .... .+
T Consensus 85 ~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~-~~vy~t-~e~~-~~ 161 (352)
T TIGR02658 85 QTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDC-YHIFPT-ANDT-FF 161 (352)
T ss_pred ccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCC-cEEEEe-cCCc-cE
Confidence 99999999874333 23789999998776 3 78999999999999998876432 222222 2222 22
Q ss_pred EEecCCCCeeEEE--EecCCeee-E---Eeecccccc-cEEEEcc-CCcEEEEEeCCCCeEEEEEcCC-----CcEEEEe
Q 018248 151 MACPGLLKGQVRV--EDYGTKKS-K---YITAHASRI-ASIAMTL-DGRFVATASSKGTLIRVFNTMD-----GSLLQEM 217 (359)
Q Consensus 151 l~~~g~~d~~v~~--~~~~~~~~-~---~~~~~~~~i-~~~~~s~-~~~~l~~~~~dg~~i~iwd~~~-----~~~~~~~ 217 (359)
+.| .||.... .+.+++.. . .+.....++ ..-.|.+ +|+++.+..+ |. |.+.|+.. .+....+
T Consensus 162 ~~~---~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~-V~~id~~~~~~~~~~~~~~~ 236 (352)
T TIGR02658 162 MHC---RDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPTYT-GK-IFQIDLSSGDAKFLPAIEAF 236 (352)
T ss_pred EEe---ecCceEEEEecCCCceEEeeeeeecCCccccccCCceEcCCCcEEEEecC-Ce-EEEEecCCCcceecceeeec
Confidence 222 2333332 22222211 1 111101110 0114455 8888877777 88 99999543 2333322
Q ss_pred ec-----CCCCcceEEEEecCCCCEEEEEcC----------CCcEEEEEccCCCCCCCCCccccCCCCCccCCCCCceee
Q 018248 218 RR-----GAERAEIYSLAFSSNAQWLAASSD----------KGTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSAISS 282 (359)
Q Consensus 218 ~~-----~~~~~~i~~~~~s~~~~~l~~~~~----------dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (359)
.. +..++.+.-++++|+++.+..... .+.|.++|..+.+..
T Consensus 237 ~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi------------------------ 292 (352)
T TIGR02658 237 TEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRL------------------------ 292 (352)
T ss_pred cccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEE------------------------
Confidence 21 123345556999999998877431 246888888877621
Q ss_pred eeEeeeecceEEecccceeEEeecCCcEEEeeecccCC-EEEEEe-cCCeEEEEEeCC
Q 018248 283 FRFIRGVLPKYFSSKWSMAQFRLPENVQYLVGFGRQNN-TIVIVG-LDGSYYKCEFDP 338 (359)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~-~dg~i~v~~~~~ 338 (359)
.. +.. ...+..++|+||++ .|++.. .++.|.+++...
T Consensus 293 ---------~~---------i~v-G~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t 331 (352)
T TIGR02658 293 ---------RK---------IEL-GHEIDSINVSQDAKPLLYALSTGDKTLYIFDAET 331 (352)
T ss_pred ---------EE---------EeC-CCceeeEEECCCCCeEEEEeCCCCCcEEEEECcC
Confidence 00 111 23567899999999 888777 478899998655
No 249
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.53 E-value=5.3e-10 Score=89.17 Aligned_cols=276 Identities=13% Similarity=0.143 Sum_probs=173.0
Q ss_pred CCceEEEEcCCCc--ceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEECCC--ccEE--eeec-cCcce
Q 018248 26 ETGFRVYLSDPYK--PIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDDHE--NRYL--GELS-FRSEV 98 (359)
Q Consensus 26 d~~i~iw~~~~~~--~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~~~--~~~~--~~~~-~~~~v 98 (359)
+..|++|++++.. ....... .+.+..+.+++.++.+.+..+.... .++.|..|.+.. |+.. .... ...+.
T Consensus 15 s~gI~v~~ld~~~g~l~~~~~v--~~~~nptyl~~~~~~~~LY~v~~~~-~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p 91 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQLV--AELGNPTYLAVNPDQRHLYVVNEPG-EEGGVAAYRIDPDDGRLTFLNRQTLPGSPP 91 (346)
T ss_pred CCceEEEEEeCcccccchhhhc--cccCCCceEEECCCCCEEEEEEecC-CcCcEEEEEEcCCCCeEEEeeccccCCCCC
Confidence 5679999998432 2222222 4577888999999888877766433 468888877664 4332 2222 33444
Q ss_pred eEEEEecceeEEE----ecCeEEEEEccc-ceeeeeE--eccCCC----------ceeeeeecCCCccEEEecCCCCeeE
Q 018248 99 KNVRLRRDRIVVV----LNQKVYVYNFTD-LKLVDQI--ETVVNP----------TGLCDVSQNAGPMVMACPGLLKGQV 161 (359)
Q Consensus 99 ~~~~~~~~~~~~~----~d~~i~i~d~~~-~~~~~~~--~~~~~~----------~~~~~~~~~~~~~~l~~~g~~d~~v 161 (359)
..+++++++++++ ..|.|.++-++. |.+.... ..|... +....+.|+++.++... -.-..|
T Consensus 92 ~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~D--LG~Dri 169 (346)
T COG2706 92 CYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPD--LGTDRI 169 (346)
T ss_pred eEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEee--cCCceE
Confidence 8899999998887 678999999854 4332221 112222 55677888887643332 223356
Q ss_pred EEEecCCeeeEEe----ecccccccEEEEccCCcEEEEEeC-CCCeEEEEEcCCC-cEEEEeec------C-CCCcceEE
Q 018248 162 RVEDYGTKKSKYI----TAHASRIASIAMTLDGRFVATASS-KGTLIRVFNTMDG-SLLQEMRR------G-AERAEIYS 228 (359)
Q Consensus 162 ~~~~~~~~~~~~~----~~~~~~i~~~~~s~~~~~l~~~~~-dg~~i~iwd~~~~-~~~~~~~~------~-~~~~~i~~ 228 (359)
.+++.+...+... .......+.|.|+|++++..+.++ +++ |.+|..... ..+.+++. . ........
T Consensus 170 ~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~st-V~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aa 248 (346)
T COG2706 170 FLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNST-VDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAA 248 (346)
T ss_pred EEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCE-EEEEEEcCCCceEEEeeeeccCccccCCCCceeE
Confidence 6655543222221 133456789999999998877765 666 999998763 22222221 1 02346678
Q ss_pred EEecCCCCEEEEEcC-CCcEEEEEccCCCCCCCCCccccCCCCCccCCCCCceeeeeEeeeecceEEecccceeEEeecC
Q 018248 229 LAFSSNAQWLAASSD-KGTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSAISSFRFIRGVLPKYFSSKWSMAQFRLPE 307 (359)
Q Consensus 229 ~~~s~~~~~l~~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (359)
+.++|||++|.++.. ...|-+|.+..... .+.++..+ .. ..
T Consensus 249 Ihis~dGrFLYasNRg~dsI~~f~V~~~~g------------------------~L~~~~~~-----~t---------eg 290 (346)
T COG2706 249 IHISPDGRFLYASNRGHDSIAVFSVDPDGG------------------------KLELVGIT-----PT---------EG 290 (346)
T ss_pred EEECCCCCEEEEecCCCCeEEEEEEcCCCC------------------------EEEEEEEe-----cc---------CC
Confidence 899999999987653 23688888876541 12222211 11 11
Q ss_pred CcEEEeeecccCCEEEEEecC-CeEEEEEeCCCCCCceEE
Q 018248 308 NVQYLVGFGRQNNTIVIVGLD-GSYYKCEFDPMKGGEMHQ 346 (359)
Q Consensus 308 ~~v~~~~~s~~~~~l~~~~~d-g~i~v~~~~~~~~~~~~~ 346 (359)
-..+...|++++++|+++..+ ..|.+|.+++++| ++.+
T Consensus 291 ~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~TG-~L~~ 329 (346)
T COG2706 291 QFPRDFNINPSGRFLIAANQKSDNITVFERDKETG-RLTL 329 (346)
T ss_pred cCCccceeCCCCCEEEEEccCCCcEEEEEEcCCCc-eEEe
Confidence 224678899999999999984 5799999998764 4433
No 250
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.52 E-value=2.8e-10 Score=90.74 Aligned_cols=245 Identities=18% Similarity=0.208 Sum_probs=166.8
Q ss_pred CCCceEEEEEccCCCEEEEec----CCceEEEEcCC--CcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeE
Q 018248 5 DPITIHHLALNQDHGCFATGT----ETGFRVYLSDP--YKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKV 78 (359)
Q Consensus 5 h~~~v~~~~~s~~g~~l~~~~----d~~i~iw~~~~--~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i 78 (359)
+...++-|+|+|++++|.++. ++.|..|.++. ++..+..... ....+...++++.++.+++.+.-. -+.|
T Consensus 38 ~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~-~~g~~p~yvsvd~~g~~vf~AnY~---~g~v 113 (346)
T COG2706 38 ELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQT-LPGSPPCYVSVDEDGRFVFVANYH---SGSV 113 (346)
T ss_pred ccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccc-cCCCCCeEEEECCCCCEEEEEEcc---CceE
Confidence 456788999999999997775 36788888875 4433322221 113333678888888888877764 4999
Q ss_pred EEEECCC-cc---EEeeeccCcc----------eeEEEEecceeEEE----ecCeEEEEEcccceeeee----EeccCCC
Q 018248 79 MIWDDHE-NR---YLGELSFRSE----------VKNVRLRRDRIVVV----LNQKVYVYNFTDLKLVDQ----IETVVNP 136 (359)
Q Consensus 79 ~iwd~~~-~~---~~~~~~~~~~----------v~~~~~~~~~~~~~----~d~~i~i~d~~~~~~~~~----~~~~~~~ 136 (359)
.++-+.. |. .+..+.|.+. +....+.|++++++ .-..|.+|++..++.... ++. ...
T Consensus 114 ~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~-G~G 192 (346)
T COG2706 114 SVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKP-GAG 192 (346)
T ss_pred EEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCccccccccccCC-CCC
Confidence 9999865 42 2334445554 88899999998887 567899999987654322 222 233
Q ss_pred ceeeeeecCCCccEEEecCCCCeeEEEEecCC--eeeEEeec---------ccccccEEEEccCCcEEEEEeCCCCeEEE
Q 018248 137 TGLCDVSQNAGPMVMACPGLLKGQVRVEDYGT--KKSKYITA---------HASRIASIAMTLDGRFVATASSKGTLIRV 205 (359)
Q Consensus 137 ~~~~~~~~~~~~~~l~~~g~~d~~v~~~~~~~--~~~~~~~~---------~~~~i~~~~~s~~~~~l~~~~~dg~~i~i 205 (359)
..-+.|+|+++..++++ --+++|.+|..+. ..+..++. .......|.++|||++|.++..--..|.+
T Consensus 193 PRHi~FHpn~k~aY~v~--EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~ 270 (346)
T COG2706 193 PRHIVFHPNGKYAYLVN--ELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAV 270 (346)
T ss_pred cceEEEcCCCcEEEEEe--ccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEE
Confidence 45799999999877775 3588899876665 33333322 23466788999999999888653333888
Q ss_pred EEcCCC-cEEEEeec-CCCCcceEEEEecCCCCEEEEEcCC-CcEEEEEccCCC
Q 018248 206 FNTMDG-SLLQEMRR-GAERAEIYSLAFSSNAQWLAASSDK-GTVHVFGLKVDS 256 (359)
Q Consensus 206 wd~~~~-~~~~~~~~-~~~~~~i~~~~~s~~~~~l~~~~~d-g~i~iw~~~~~~ 256 (359)
|.+... ..+..+.. ..+......+.|++.|++|+++..+ ..|.+|.++...
T Consensus 271 f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~T 324 (346)
T COG2706 271 FSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERDKET 324 (346)
T ss_pred EEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcCCC
Confidence 877542 22222221 1133457899999999999988865 469999987655
No 251
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.51 E-value=2.5e-10 Score=106.99 Aligned_cols=311 Identities=13% Similarity=0.134 Sum_probs=191.1
Q ss_pred CCCceEEEEEccCCCEEEEec-CCceEEE----EcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEE
Q 018248 5 DPITIHHLALNQDHGCFATGT-ETGFRVY----LSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVM 79 (359)
Q Consensus 5 h~~~v~~~~~s~~g~~l~~~~-d~~i~iw----~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~ 79 (359)
..+.|.++.|-++...++++. +|.|.+. +.+.......-.+ ..++.+++|+|+...+++++ .++++.
T Consensus 74 ~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~~E~VG~v----d~GI~a~~WSPD~Ella~vT----~~~~l~ 145 (928)
T PF04762_consen 74 PNDKIVSFQYLADSESLCIALASGDIILVREDPDPDEDEIEIVGSV----DSGILAASWSPDEELLALVT----GEGNLL 145 (928)
T ss_pred CCCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCceeEEEEEE----cCcEEEEEECCCcCEEEEEe----CCCEEE
Confidence 457899999999999888888 9999999 5555444444555 68999999999999999999 457776
Q ss_pred EEECCCccEE------------------------eeec-------------------------cCcceeEEEEecceeEE
Q 018248 80 IWDDHENRYL------------------------GELS-------------------------FRSEVKNVRLRRDRIVV 110 (359)
Q Consensus 80 iwd~~~~~~~------------------------~~~~-------------------------~~~~v~~~~~~~~~~~~ 110 (359)
+.. .+.+.+ .+|. ....-..++|-.||.++
T Consensus 146 ~mt-~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yF 224 (928)
T PF04762_consen 146 LMT-RDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYF 224 (928)
T ss_pred EEe-ccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEE
Confidence 654 111111 1110 11233467899999998
Q ss_pred E-------e--cCeEEEEEcccceeeeeEeccCCCceeeeeecCCCccEEEecCCC--CeeEEEEecCCeeeEEee----
Q 018248 111 V-------L--NQKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAGPMVMACPGLL--KGQVRVEDYGTKKSKYIT---- 175 (359)
Q Consensus 111 ~-------~--d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~--d~~v~~~~~~~~~~~~~~---- 175 (359)
+ . -..++||+- .|+...+-+.-.+--..++|.|.|.. +|++-.. ...|.++.++|-.-..|.
T Consensus 225 AVss~~~~~~~~R~iRVy~R-eG~L~stSE~v~gLe~~l~WrPsG~l--IA~~q~~~~~~~VvFfErNGLrhgeF~l~~~ 301 (928)
T PF04762_consen 225 AVSSVEPETGSRRVIRVYSR-EGELQSTSEPVDGLEGALSWRPSGNL--IASSQRLPDRHDVVFFERNGLRHGEFTLRFD 301 (928)
T ss_pred EEEEEEcCCCceeEEEEECC-CceEEeccccCCCccCCccCCCCCCE--EEEEEEcCCCcEEEEEecCCcEeeeEecCCC
Confidence 8 1 258999995 47655555444444456788888864 5553222 234444888875444432
Q ss_pred cccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCc--EEEEeecCCCCcceEEEEecCCC-CEEEEEcCCCcEEEEEc
Q 018248 176 AHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGS--LLQEMRRGAERAEIYSLAFSSNA-QWLAASSDKGTVHVFGL 252 (359)
Q Consensus 176 ~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~--~~~~~~~~~~~~~i~~~~~s~~~-~~l~~~~~dg~i~iw~~ 252 (359)
.....|..+.|++|+..||..-.|. |.+|-..+.. ..+++... ....+..+.|+|.. ..|...+.+|.+..+++
T Consensus 302 ~~~~~v~~l~Wn~ds~iLAv~~~~~--vqLWt~~NYHWYLKqei~~~-~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~ 378 (928)
T PF04762_consen 302 PEEEKVIELAWNSDSEILAVWLEDR--VQLWTRSNYHWYLKQEIRFS-SSESVNFVKWDPEKPLRLHVLTSNGQYEIYDF 378 (928)
T ss_pred CCCceeeEEEECCCCCEEEEEecCC--ceEEEeeCCEEEEEEEEEcc-CCCCCCceEECCCCCCEEEEEecCCcEEEEEE
Confidence 3456899999999999999977664 9999987764 33344322 22345569999954 45666776677766554
Q ss_pred cCCCCCCCCCccccCCCCC--ccCCCCCceeeeeEeeeecceEEecccceeEEeecCCcEEEeeecccCCEEEEEecCCe
Q 018248 253 KVDSGSPGTSKLHSASEPN--LSSKNSSAISSFRFIRGVLPKYFSSKWSMAQFRLPENVQYLVGFGRQNNTIVIVGLDGS 330 (359)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~ 330 (359)
.-..... ....+ .+......+..+.+. .+......+--+...+.++ ..|..++|++++..+++...||.
T Consensus 379 ~~~v~~s-------~~~~~~D~g~vaVIDG~~lllT-pf~~a~VPPPMs~~~l~~~-~~v~~vaf~~~~~~~avl~~d~~ 449 (928)
T PF04762_consen 379 AWDVSRS-------PGSSPNDNGTVAVIDGNKLLLT-PFRRAVVPPPMSSYELELP-SPVNDVAFSPSNSRFAVLTSDGS 449 (928)
T ss_pred EEEEEec-------CCCCccCceEEEEEeCCeEEEe-cccccCCCchHhceEEcCC-CCcEEEEEeCCCCeEEEEECCCC
Confidence 3221000 00000 000001111111100 0000000011111224443 57899999999888999999999
Q ss_pred EEEEEeCCC
Q 018248 331 YYKCEFDPM 339 (359)
Q Consensus 331 i~v~~~~~~ 339 (359)
+.+|.++..
T Consensus 450 l~~~~~~~~ 458 (928)
T PF04762_consen 450 LSIYEWDLK 458 (928)
T ss_pred EEEEEecCC
Confidence 999997664
No 252
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.51 E-value=2.1e-11 Score=105.72 Aligned_cols=222 Identities=8% Similarity=-0.012 Sum_probs=137.6
Q ss_pred CCceEEEEEccCCCEEE---Eec-CC--ceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCC-CCCeE
Q 018248 6 PITIHHLALNQDHGCFA---TGT-ET--GFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPH-QSNKV 78 (359)
Q Consensus 6 ~~~v~~~~~s~~g~~l~---~~~-d~--~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~-~d~~i 78 (359)
...+.+-+|||||+.++ +.. ++ .|.+.++++++......+ .+......|+|+++.+++++.... .+-.+
T Consensus 184 ~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~----~g~~~~p~wSPDG~~Laf~s~~~g~~di~~ 259 (428)
T PRK01029 184 HSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILAL----QGNQLMPTFSPRKKLLAFISDRYGNPDLFI 259 (428)
T ss_pred CCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeecC----CCCccceEECCCCCEEEEEECCCCCcceeE
Confidence 34566789999998632 333 43 477778887765544444 344456789999999988774210 23344
Q ss_pred EEEECCCc---cEEeeecc-CcceeEEEEecceeEEE----ecCe--EEEEEccc-ceeeeeEeccCCCceeeeeecCCC
Q 018248 79 MIWDDHEN---RYLGELSF-RSEVKNVRLRRDRIVVV----LNQK--VYVYNFTD-LKLVDQIETVVNPTGLCDVSQNAG 147 (359)
Q Consensus 79 ~iwd~~~~---~~~~~~~~-~~~v~~~~~~~~~~~~~----~d~~--i~i~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 147 (359)
.+|++..+ +....... .......+|+|||+.++ .++. |+++++.. +.....+......+....|+|+++
T Consensus 260 ~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~ 339 (428)
T PRK01029 260 QSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDGK 339 (428)
T ss_pred EEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEeccCCCCccceeECCCCC
Confidence 55776653 33333322 23446789999998776 3454 44555432 233344443444556788999998
Q ss_pred ccEEEecCCCCeeEEEEecCCeeeEEeecccccccEEEEccCCcEEEEEeC---CCCeEEEEEcCCCcEEEEeecCCCCc
Q 018248 148 PMVMACPGLLKGQVRVEDYGTKKSKYITAHASRIASIAMTLDGRFVATASS---KGTLIRVFNTMDGSLLQEMRRGAERA 224 (359)
Q Consensus 148 ~~~l~~~g~~d~~v~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~---dg~~i~iwd~~~~~~~~~~~~~~~~~ 224 (359)
.++++........|.+++..+...+.+......+....|+|||+.|+..+. ... |.++|+.+++...... ..+
T Consensus 340 ~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~-L~~vdl~~g~~~~Lt~---~~g 415 (428)
T PRK01029 340 KIAFCSVIKGVRQICVYDLATGRDYQLTTSPENKESPSWAIDSLHLVYSAGNSNESE-LYLISLITKKTRKIVI---GSG 415 (428)
T ss_pred EEEEEEcCCCCcEEEEEECCCCCeEEccCCCCCccceEECCCCCEEEEEECCCCCce-EEEEECCCCCEEEeec---CCC
Confidence 744443211234677788877666666655556788999999998875443 245 8888988777654443 234
Q ss_pred ceEEEEecCCC
Q 018248 225 EIYSLAFSSNA 235 (359)
Q Consensus 225 ~i~~~~~s~~~ 235 (359)
.+...+|+|-.
T Consensus 416 ~~~~p~Ws~~~ 426 (428)
T PRK01029 416 EKRFPSWGAFP 426 (428)
T ss_pred cccCceecCCC
Confidence 56778888753
No 253
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.49 E-value=8.8e-14 Score=121.07 Aligned_cols=229 Identities=14% Similarity=0.150 Sum_probs=174.0
Q ss_pred CCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEECCCccEEeeec-cCcceeEEEEecceeEEE---ecCeEEEEEccc
Q 018248 48 NPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDDHENRYLGELS-FRSEVKNVRLRRDRIVVV---LNQKVYVYNFTD 123 (359)
Q Consensus 48 ~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~---~d~~i~i~d~~~ 123 (359)
||...|.|+.+.-.+.+++..+ .|..++||..+++.++.... |.+.|+.++.+.++.+++ .|..|++|.+.+
T Consensus 188 gH~naVyca~fDrtg~~Iitgs----dd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~ 263 (1113)
T KOG0644|consen 188 GHRNAVYCAIFDRTGRYIITGS----DDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPD 263 (1113)
T ss_pred hhhhheeeeeeccccceEeecC----ccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEecCC
Confidence 8999999999888888887777 78999999999999999998 999999999999888877 788899999999
Q ss_pred ceeeeeEeccCCCceeeeeecCCCccEEEecCCCCeeEEEEecCCeeeEEee-----cccccccEEEEccCCcEEEEEeC
Q 018248 124 LKLVDQIETVVNPTGLCDVSQNAGPMVMACPGLLKGQVRVEDYGTKKSKYIT-----AHASRIASIAMTLDGRFVATASS 198 (359)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~v~~~~~~~~~~~~~~-----~~~~~i~~~~~s~~~~~l~~~~~ 198 (359)
+.++..+.+|.+.++.++|+|-. + .+.||++++|+.+..+..... .....+.++.|..++.-++|++.
T Consensus 264 ~~pvsvLrghtgavtaiafsP~~------s-ss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~ 336 (1113)
T KOG0644|consen 264 GAPVSVLRGHTGAVTAIAFSPRA------S-SSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSR 336 (1113)
T ss_pred CchHHHHhccccceeeeccCccc------c-CCCCCceEeccccccccccCCCCCCcccccceeeeeccccccccccccC
Confidence 99999999999999999999965 2 457999999998843332221 12345677888888888999999
Q ss_pred CCCeEEEEEcCCCcEEEEeecCCCCcceEEEEecCC-CCEEEEEcCCCcEEEEEccCCCCCCCCCccccCCCCCccCCCC
Q 018248 199 KGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSN-AQWLAASSDKGTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNS 277 (359)
Q Consensus 199 dg~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~-~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (359)
|+. -..|.+..... +...+.-+.++.| ..+.+++-.+-.+++|++.++....
T Consensus 337 d~e-a~n~e~~~l~~--------~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H------------------ 389 (1113)
T KOG0644|consen 337 DGE-ARNHEFEQLAW--------RSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLH------------------ 389 (1113)
T ss_pred Ccc-cccchhhHhhh--------hccceEEEeccccccccceeeeeeeEeeeeecccchhhh------------------
Confidence 998 77776532211 1111111222222 2466677778889999999886221
Q ss_pred CceeeeeEeeeecceEEecccceeEEeecCCcEEEeeecccC-CEEEEEecCCeEEEEEeCC
Q 018248 278 SAISSFRFIRGVLPKYFSSKWSMAQFRLPENVQYLVGFGRQN-NTIVIVGLDGSYYKCEFDP 338 (359)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~v~~~~~ 338 (359)
. ...+.+.+..+.++|-+ +...+++.||...||++-.
T Consensus 390 ---------------~---------l~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~e 427 (1113)
T KOG0644|consen 390 ---------------N---------LMGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWE 427 (1113)
T ss_pred ---------------h---------hcccccceeeeeecCCCcHhhhhccCCCceEeeeccc
Confidence 0 22344677889999944 5667888999999999865
No 254
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.48 E-value=4.9e-12 Score=101.09 Aligned_cols=208 Identities=14% Similarity=0.149 Sum_probs=144.8
Q ss_pred CCCEEEEecCCceEEEEcCCCc--ceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEECCCccEEeeec-
Q 018248 17 DHGCFATGTETGFRVYLSDPYK--PIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDDHENRYLGELS- 93 (359)
Q Consensus 17 ~g~~l~~~~d~~i~iw~~~~~~--~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~- 93 (359)
||.++++-++|.+.+|..+.+. ......+. -..++..+.-.+....++..+|-. .-..+.+||+++.+.+.+-+
T Consensus 115 dg~Litc~~sG~l~~~~~k~~d~hss~l~~la--~g~g~~~~r~~~~~p~Iva~GGke-~~n~lkiwdle~~~qiw~aKN 191 (412)
T KOG3881|consen 115 DGTLITCVSSGNLQVRHDKSGDLHSSKLIKLA--TGPGLYDVRQTDTDPYIVATGGKE-NINELKIWDLEQSKQIWSAKN 191 (412)
T ss_pred CCEEEEEecCCcEEEEeccCCccccccceeee--cCCceeeeccCCCCCceEecCchh-cccceeeeecccceeeeeccC
Confidence 5555566559999999988432 11112221 134455555555445555444422 23789999999886665543
Q ss_pred ---------cCcceeEEEEecc--eeEEE---ecCeEEEEEcccc-eeeeeEeccCCCceeeeeecCCCccEEEecCCCC
Q 018248 94 ---------FRSEVKNVRLRRD--RIVVV---LNQKVYVYNFTDL-KLVDQIETVVNPTGLCDVSQNAGPMVMACPGLLK 158 (359)
Q Consensus 94 ---------~~~~v~~~~~~~~--~~~~~---~d~~i~i~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d 158 (359)
.+-.++++.|-+. ...++ .-+++++||.+.+ +++..+.....++.++...|+++.++ + |...
T Consensus 192 vpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy--~-gn~~ 268 (412)
T KOG3881|consen 192 VPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIY--T-GNTK 268 (412)
T ss_pred CCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEE--E-eccc
Confidence 1224567888776 45554 7899999999654 56777877888999999999988633 3 5578
Q ss_pred eeEEEEecCC-eeeEE-eecccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcEEEEeecCCCCcceEEEEecCC
Q 018248 159 GQVRVEDYGT-KKSKY-ITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSN 234 (359)
Q Consensus 159 ~~v~~~~~~~-~~~~~-~~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~ 234 (359)
+.+..++.++ ..... +.+-.+.|+++..+|.+++||+++-|.. |+|+|+++.+++..... .+.++++.+.++
T Consensus 269 g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRy-vRIhD~ktrkll~kvYv---Ks~lt~il~~~~ 342 (412)
T KOG3881|consen 269 GQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRY-VRIHDIKTRKLLHKVYV---KSRLTFILLRDD 342 (412)
T ss_pred chhheecccCceeeccccCCccCCcceEEEcCCCceEEeecccee-EEEeecccchhhhhhhh---hccccEEEecCC
Confidence 8888866655 44433 6788999999999999999999999999 99999999777766553 345677777654
No 255
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.46 E-value=4e-11 Score=94.49 Aligned_cols=205 Identities=11% Similarity=0.196 Sum_probs=139.2
Q ss_pred CCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEE-CCCccEEeeec--cCcceeEEEEecceeEEE---ecCeEEEEEc
Q 018248 48 NPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWD-DHENRYLGELS--FRSEVKNVRLRRDRIVVV---LNQKVYVYNF 121 (359)
Q Consensus 48 ~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd-~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~---~d~~i~i~d~ 121 (359)
||.+.+......+..+.++.++ .|.++++|- ...++.-..+. .+.+++++.+.++...++ .+|++.-+.+
T Consensus 22 G~~d~vn~~~l~~~e~gv~~~s----~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngtvtefs~ 97 (404)
T KOG1409|consen 22 GSQDDVNAAILIPKEEGVISVS----EDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGTVTEFAL 97 (404)
T ss_pred CchhhhhhheeccCCCCeEEcc----ccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecceEEEEEh
Confidence 8888888888888888999888 799999995 34455555554 467888899988876665 7777777765
Q ss_pred c----cceeeeeEeccCCCceeeeeecCCCc------------------------------------cEEEecCCCCeeE
Q 018248 122 T----DLKLVDQIETVVNPTGLCDVSQNAGP------------------------------------MVMACPGLLKGQV 161 (359)
Q Consensus 122 ~----~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------------~~l~~~g~~d~~v 161 (359)
. ....++....|...+..+-++-..+. ...+..|...|.|
T Consensus 98 sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~~d~~~~fvGd~~gqv 177 (404)
T KOG1409|consen 98 SEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFETPASALQFDALYAFVGDHSGQI 177 (404)
T ss_pred hhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEeeccCCCCceeeEEEEecccccce
Confidence 2 11112222222222222222111111 0011223333444
Q ss_pred EE---EecCCeeeEEeecccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcEE-EEeecCCCCcceEEEEecCCCCE
Q 018248 162 RV---EDYGTKKSKYITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLL-QEMRRGAERAEIYSLAFSSNAQW 237 (359)
Q Consensus 162 ~~---~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~~-~~~~~~~~~~~i~~~~~s~~~~~ 237 (359)
.+ .......+..+.+|.+.+.+++|.|....|.+|..|.. +.+||+.-.+-+ .++.+ |...|..+..-+--+.
T Consensus 178 t~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~-vi~wdigg~~g~~~el~g--h~~kV~~l~~~~~t~~ 254 (404)
T KOG1409|consen 178 TMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHS-VIMWDIGGRKGTAYELQG--HNDKVQALSYAQHTRQ 254 (404)
T ss_pred EEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCc-eEEEeccCCcceeeeecc--chhhhhhhhhhhhhee
Confidence 33 33334667788899999999999999999999999999 999999755433 33443 6678888888888889
Q ss_pred EEEEcCCCcEEEEEccCCCCCC
Q 018248 238 LAASSDKGTVHVFGLKVDSGSP 259 (359)
Q Consensus 238 l~~~~~dg~i~iw~~~~~~~~~ 259 (359)
|.+++.||.|.+|+.+....+.
T Consensus 255 l~S~~edg~i~~w~mn~~r~et 276 (404)
T KOG1409|consen 255 LISCGEDGGIVVWNMNVKRVET 276 (404)
T ss_pred eeeccCCCeEEEEeccceeecC
Confidence 9999999999999998766443
No 256
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.45 E-value=3.5e-11 Score=109.43 Aligned_cols=268 Identities=10% Similarity=0.061 Sum_probs=161.8
Q ss_pred eeeecccCCCCceeEEEEeccC-CEEEEEecCCCCCCeEEEEECCC-------ccEEeeec-cCcceeEEEEecceeEEE
Q 018248 41 MRRDFDRNPRGGTQLVSMLFRS-NIICLVNSGPHQSNKVMIWDDHE-------NRYLGELS-FRSEVKNVRLRRDRIVVV 111 (359)
Q Consensus 41 ~~~~~~~~h~~~v~~~~~~~~~-~~~~~~~~~~~~d~~i~iwd~~~-------~~~~~~~~-~~~~v~~~~~~~~~~~~~ 111 (359)
....+. .|...+..++.+... .+++.++ .||+|++|+... .+...++. ....+.++.+.+.+..++
T Consensus 1040 lVAhL~-Ehs~~v~k~a~s~~~~s~FvsgS----~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~A 1114 (1431)
T KOG1240|consen 1040 LVAHLH-EHSSAVIKLAVSSEHTSLFVSGS----DDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFA 1114 (1431)
T ss_pred Eeehhh-hccccccceeecCCCCceEEEec----CCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEE
Confidence 334443 566666666665544 4444444 689999999653 13334444 567888899888887777
Q ss_pred ---ecCeEEEEEcccc--e-----eeeeEeccC--CCceeeeeecCCCccEEEecCCCCeeEEEEecCCeee---EEeec
Q 018248 112 ---LNQKVYVYNFTDL--K-----LVDQIETVV--NPTGLCDVSQNAGPMVMACPGLLKGQVRVEDYGTKKS---KYITA 176 (359)
Q Consensus 112 ---~d~~i~i~d~~~~--~-----~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~g~~d~~v~~~~~~~~~~---~~~~~ 176 (359)
.||.|.+.++... + .......+. .-+...++........+++ +..-+.+..|+...... .....
T Consensus 1115 v~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy-~T~~~~iv~~D~r~~~~~w~lk~~~ 1193 (1431)
T KOG1240|consen 1115 VSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVY-ATDLSRIVSWDTRMRHDAWRLKNQL 1193 (1431)
T ss_pred EEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEE-EEeccceEEecchhhhhHHhhhcCc
Confidence 8999999998542 1 111111111 1222333333333323444 33556666687765321 12233
Q ss_pred ccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcEEEEeecCCCCcceEEEEecCC---CCEEEEEc--CCCcEEEEE
Q 018248 177 HASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSN---AQWLAASS--DKGTVHVFG 251 (359)
Q Consensus 177 ~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~---~~~l~~~~--~dg~i~iw~ 251 (359)
..+.|++++.+|.+.++++|+..|. +.+||++=+.++....-. +..+|..+..+|- ....++++ ..+.|.+|+
T Consensus 1194 ~hG~vTSi~idp~~~WlviGts~G~-l~lWDLRF~~~i~sw~~P-~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn 1271 (1431)
T KOG1240|consen 1194 RHGLVTSIVIDPWCNWLVIGTSRGQ-LVLWDLRFRVPILSWEHP-ARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWN 1271 (1431)
T ss_pred cccceeEEEecCCceEEEEecCCce-EEEEEeecCceeecccCc-ccCCcceEEeeccCCCCceEEEecccCCCceeeee
Confidence 4678999999999999999999999 999999999988888744 4478888887763 34555554 467799999
Q ss_pred ccCCCCCCCCCccccCCCCCccCCCCCceeeeeEeeeecceEEecccceeEEeecCCcEEEeeecccCCEEEEEecCCeE
Q 018248 252 LKVDSGSPGTSKLHSASEPNLSSKNSSAISSFRFIRGVLPKYFSSKWSMAQFRLPENVQYLVGFGRQNNTIVIVGLDGSY 331 (359)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i 331 (359)
+.++......-.... ...+.. .+|.. .. .+-+.-....+++..-+..+++|+.|+.|
T Consensus 1272 ~~~g~~~~vl~~s~~-------------~p~ls~---~~Ps~--~~-----~kp~~~~~~~~~~~~~~~~~ltggsd~kI 1328 (1431)
T KOG1240|consen 1272 METGLRQTVLWASDG-------------APILSY---ALPSN--DA-----RKPDSLAGISCGVCEKNGFLLTGGSDMKI 1328 (1431)
T ss_pred cccCcceEEEEcCCC-------------Ccchhh---hcccc--cC-----CCCCcccceeeecccCCceeeecCCccce
Confidence 999864321100000 000000 00000 00 00011122345555566899999999999
Q ss_pred EEEEeCCC
Q 018248 332 YKCEFDPM 339 (359)
Q Consensus 332 ~v~~~~~~ 339 (359)
+.|+....
T Consensus 1329 R~wD~~~p 1336 (1431)
T KOG1240|consen 1329 RKWDPTRP 1336 (1431)
T ss_pred eeccCCCc
Confidence 99987653
No 257
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.43 E-value=1.5e-09 Score=89.87 Aligned_cols=234 Identities=13% Similarity=0.085 Sum_probs=148.7
Q ss_pred EccCCCEEEEec-----------CCceEEEEcCCCcceeeeecccC-C---CCceeEEEEeccCCEEEEEecCCCCCCeE
Q 018248 14 LNQDHGCFATGT-----------ETGFRVYLSDPYKPIMRRDFDRN-P---RGGTQLVSMLFRSNIICLVNSGPHQSNKV 78 (359)
Q Consensus 14 ~s~~g~~l~~~~-----------d~~i~iw~~~~~~~~~~~~~~~~-h---~~~v~~~~~~~~~~~~~~~~~~~~~d~~i 78 (359)
+||||+.|+++. +..|.+||..+.+......+... + ......++++++++.+++..-. .+..|
T Consensus 53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~--p~~~V 130 (352)
T TIGR02658 53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFS--PSPAV 130 (352)
T ss_pred ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCC--CCCEE
Confidence 899999886654 37799999999877755554200 0 1122367888888888766543 36999
Q ss_pred EEEECCCccEEeeeccCcceeEEEEecceeEEE-ecCeEEEEEccc-ceee-ee---EeccCCCce-eeeeec-CCCccE
Q 018248 79 MIWDDHENRYLGELSFRSEVKNVRLRRDRIVVV-LNQKVYVYNFTD-LKLV-DQ---IETVVNPTG-LCDVSQ-NAGPMV 150 (359)
Q Consensus 79 ~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~d~~i~i~d~~~-~~~~-~~---~~~~~~~~~-~~~~~~-~~~~~~ 150 (359)
.+.|+.+++.+.++..++...-...+++...+. .||......+.+ ++.. .. +.....++. .-.+.+ ++.. +
T Consensus 131 ~VvD~~~~kvv~ei~vp~~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~-~ 209 (352)
T TIGR02658 131 GVVDLEGKAFVRMMDVPDCYHIFPTANDTFFMHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRL-V 209 (352)
T ss_pred EEEECCCCcEEEEEeCCCCcEEEEecCCccEEEeecCceEEEEecCCCceEEeeeeeecCCccccccCCceEcCCCcE-E
Confidence 999999999999988655444444444444433 666666654422 2211 11 111000000 013345 5543 3
Q ss_pred EEecCCCCeeEEEEecCC------eeeEEeec-------ccccccEEEEccCCcEEEEEe----------CCCCeEEEEE
Q 018248 151 MACPGLLKGQVRVEDYGT------KKSKYITA-------HASRIASIAMTLDGRFVATAS----------SKGTLIRVFN 207 (359)
Q Consensus 151 l~~~g~~d~~v~~~~~~~------~~~~~~~~-------~~~~i~~~~~s~~~~~l~~~~----------~dg~~i~iwd 207 (359)
.++ ..|.|.+-+..+ .....+.. ..+.+.-++++|+++.+++.. ..+. |.++|
T Consensus 210 ~vs---~eG~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~-V~ViD 285 (352)
T TIGR02658 210 WPT---YTGKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRF-LFVVD 285 (352)
T ss_pred EEe---cCCeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCE-EEEEE
Confidence 332 248999855332 11222111 123344599999999887743 1135 99999
Q ss_pred cCCCcEEEEeecCCCCcceEEEEecCCCC-EEEEEc-CCCcEEEEEccCCCC
Q 018248 208 TMDGSLLQEMRRGAERAEIYSLAFSSNAQ-WLAASS-DKGTVHVFGLKVDSG 257 (359)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~i~~~~~s~~~~-~l~~~~-~dg~i~iw~~~~~~~ 257 (359)
..+++.+..+..+ ..+..++++||++ +|++.+ .++.|.+.|..+++.
T Consensus 286 ~~t~kvi~~i~vG---~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~ 334 (352)
T TIGR02658 286 AKTGKRLRKIELG---HEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKE 334 (352)
T ss_pred CCCCeEEEEEeCC---CceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeE
Confidence 9999999998853 4789999999999 777666 578899999998863
No 258
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.41 E-value=1e-09 Score=94.58 Aligned_cols=174 Identities=14% Similarity=0.079 Sum_probs=112.5
Q ss_pred CCeEEEEECCCccEEeeeccCcceeEEEEecceeE-EE----e--cCeEEEEEcccceeeeeEeccCCCceeeeeecCCC
Q 018248 75 SNKVMIWDDHENRYLGELSFRSEVKNVRLRRDRIV-VV----L--NQKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAG 147 (359)
Q Consensus 75 d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~----~--d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (359)
...|.+-|..... .+.+..........|+|+|+. ++ . +..|+++|+.+++...... ..+......|+|+++
T Consensus 168 ~~~l~~~d~dg~~-~~~~~~~~~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-~~g~~~~~~~SPDG~ 245 (419)
T PRK04043 168 KSNIVLADYTLTY-QKVIVKGGLNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS-SQGMLVVSDVSKDGS 245 (419)
T ss_pred cceEEEECCCCCc-eeEEccCCCeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec-CCCcEEeeEECCCCC
Confidence 3577777754433 443443347788999999974 44 2 4679999998876544433 344445678999998
Q ss_pred ccEEEecCCCCeeEEEEecCCeeeEEeecccccccEEEEccCCcEEEEEeCC-C--CeEEEEEcCCCcEEEEeecCCCCc
Q 018248 148 PMVMACPGLLKGQVRVEDYGTKKSKYITAHASRIASIAMTLDGRFVATASSK-G--TLIRVFNTMDGSLLQEMRRGAERA 224 (359)
Q Consensus 148 ~~~l~~~g~~d~~v~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d-g--~~i~iwd~~~~~~~~~~~~~~~~~ 224 (359)
.+++......+..|++.+..+...+.+..+........|+|||+.|+..+.. + . |.+.|+.+++..+....+ .
T Consensus 246 ~la~~~~~~g~~~Iy~~dl~~g~~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~-Iy~~dl~~g~~~rlt~~g-~-- 321 (419)
T PRK04043 246 KLLLTMAPKGQPDIYLYDTNTKTLTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPN-IFMKKLNSGSVEQVVFHG-K-- 321 (419)
T ss_pred EEEEEEccCCCcEEEEEECCCCcEEEcccCCCccCccEECCCCCEEEEEECCCCCce-EEEEECCCCCeEeCccCC-C--
Confidence 8665543333456777666666666666555444567899999977766543 2 4 888888877764433221 1
Q ss_pred ceEEEEecCCCCEEEEEcCC---------CcEEEEEccCCC
Q 018248 225 EIYSLAFSSNAQWLAASSDK---------GTVHVFGLKVDS 256 (359)
Q Consensus 225 ~i~~~~~s~~~~~l~~~~~d---------g~i~iw~~~~~~ 256 (359)
....|||||+.|+..+.. ..|.+.|++++.
T Consensus 322 --~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~ 360 (419)
T PRK04043 322 --NNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDY 360 (419)
T ss_pred --cCceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCC
Confidence 124899999988776543 256677776654
No 259
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.41 E-value=9.3e-11 Score=98.53 Aligned_cols=202 Identities=8% Similarity=0.104 Sum_probs=138.6
Q ss_pred CCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEECCCccEEeeeccCcceeEEEE-ecceeE--EE-ecCeEEEEEccc
Q 018248 48 NPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDDHENRYLGELSFRSEVKNVRL-RRDRIV--VV-LNQKVYVYNFTD 123 (359)
Q Consensus 48 ~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~-~~~~~~--~~-~d~~i~i~d~~~ 123 (359)
+|....+.+.+++++.+++..+. ....|++||+.+-.+...-.....+..+.. +.|-.- ++ .|.+|.+... -
T Consensus 49 e~p~ast~ik~s~DGqY~lAtG~---YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak-~ 124 (703)
T KOG2321|consen 49 EMPTASTRIKVSPDGQYLLATGT---YKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAK-Y 124 (703)
T ss_pred CCccccceeEecCCCcEEEEecc---cCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeeehhh-c
Confidence 57777888999999998876665 568999999876554444334444444443 333222 22 7778777653 2
Q ss_pred ceeeeeEeccCCCceeeeeecCCCccEEEecCCCCeeEEEEecCCeeeEEeecccccccEEEEccCCcEEEEEeCCCCeE
Q 018248 124 LKLVDQIETVVNPTGLCDVSQNAGPMVMACPGLLKGQVRVEDYGTKKSKYITAHASRIASIAMTLDGRFVATASSKGTLI 203 (359)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~v~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~~i 203 (359)
|. -..+..+ .....++++.-.-.++++ |+....-++....+.-+..+....+.++++..++-..+|++|+.+|. |
T Consensus 125 G~-hy~~RIP-~~GRDm~y~~~scDly~~--gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~-V 199 (703)
T KOG2321|consen 125 GR-HYRTRIP-KFGRDMKYHKPSCDLYLV--GSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGV-V 199 (703)
T ss_pred Ce-eeeeecC-cCCccccccCCCccEEEe--ecCcceEEEEccccccccccccccccceeeeecCccceEEecccCce-E
Confidence 21 1111111 112234444333334444 33344555566777888888888899999999999999999999999 9
Q ss_pred EEEEcCCCcEEEEeecCC----CC-----cceEEEEecCCCCEEEEEcCCCcEEEEEccCCCCC
Q 018248 204 RVFNTMDGSLLQEMRRGA----ER-----AEIYSLAFSSNAQWLAASSDKGTVHVFGLKVDSGS 258 (359)
Q Consensus 204 ~iwd~~~~~~~~~~~~~~----~~-----~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~ 258 (359)
..||.++...+..+.... ++ ..|+++.|+.+|-.+++|+.+|.|.|||+++.++.
T Consensus 200 EfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl 263 (703)
T KOG2321|consen 200 EFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPL 263 (703)
T ss_pred EEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCce
Confidence 999999887766655321 22 24999999999999999999999999999998754
No 260
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.40 E-value=1.4e-10 Score=89.54 Aligned_cols=220 Identities=14% Similarity=0.142 Sum_probs=141.6
Q ss_pred CceEEEEcCCCcceeeeecccCCCCceeEEEEec---cCCEEEEEecCCCCCCeEEEEECCCccEEeeec------cC-c
Q 018248 27 TGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLF---RSNIICLVNSGPHQSNKVMIWDDHENRYLGELS------FR-S 96 (359)
Q Consensus 27 ~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~---~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~------~~-~ 96 (359)
|.+.+|+++..+......+...-...+..+.|.. ++. .++.-.. ..|.|.++..........++ .. .
T Consensus 46 Gkl~Lys~~d~~~~~l~~~q~~dts~~~dm~w~~~~~~g~-~~l~~a~--a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~ 122 (339)
T KOG0280|consen 46 GKLHLYSLEDMKLSPLDTLQCTDTSTEFDMLWRIRETDGD-FNLLDAH--ARGQIQLYRNDEDESSVHLRGLSSKKISVV 122 (339)
T ss_pred cceEEEeecccccCccceeeeecccccceeeeeeccCCcc-ceeeecc--ccceEEEEeeccceeeeeecccchhhhhhe
Confidence 4578888876544322222101123344444442 223 2222211 46889998755444433333 11 1
Q ss_pred ceeEEEEecceeEEE---ecCeEEEEEccccee--eeeEeccCCCceeeeeecCCCccEEEecCCCCeeEEEEecCCee-
Q 018248 97 EVKNVRLRRDRIVVV---LNQKVYVYNFTDLKL--VDQIETVVNPTGLCDVSQNAGPMVMACPGLLKGQVRVEDYGTKK- 170 (359)
Q Consensus 97 ~v~~~~~~~~~~~~~---~d~~i~i~d~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~v~~~~~~~~~- 170 (359)
...++.|++.+.-++ .+|.+.+-+...+.. ++.++.|.-+.+.+.|+..... ++.+|+.|+.+..|+.+...
T Consensus 123 ~~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pn--lvytGgDD~~l~~~D~R~p~~ 200 (339)
T KOG0280|consen 123 EALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPN--LVYTGGDDGSLSCWDIRIPKT 200 (339)
T ss_pred eeeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCc--eEEecCCCceEEEEEecCCcc
Confidence 245667887776555 778888666544433 3477888888888888876665 56669999999999988322
Q ss_pred --eEEeecccccccEEEEcc-CCcEEEEEeCCCCeEEEEEcC-CCcEEEEeecCCCCcceEEEEecCCC--CEEEEEcCC
Q 018248 171 --SKYITAHASRIASIAMTL-DGRFVATASSKGTLIRVFNTM-DGSLLQEMRRGAERAEIYSLAFSSNA--QWLAASSDK 244 (359)
Q Consensus 171 --~~~~~~~~~~i~~~~~s~-~~~~l~~~~~dg~~i~iwd~~-~~~~~~~~~~~~~~~~i~~~~~s~~~--~~l~~~~~d 244 (359)
.+..+.|...|.++.-+| .+.++++|+.|.. |++||.+ .++++..-. -.+.|+.+.++|.- +.|+++-.+
T Consensus 201 ~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~-i~~~DtRnm~kPl~~~~---v~GGVWRi~~~p~~~~~lL~~CMh~ 276 (339)
T KOG0280|consen 201 FIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDEC-IRVLDTRNMGKPLFKAK---VGGGVWRIKHHPEIFHRLLAACMHN 276 (339)
T ss_pred eeeecceeeecceEEEecCCCCCceEEEeccccc-eeeeehhcccCccccCc---cccceEEEEecchhhhHHHHHHHhc
Confidence 222456888999998886 5779999999999 9999998 467766554 34799999999853 455555555
Q ss_pred CcEEEEEccCCC
Q 018248 245 GTVHVFGLKVDS 256 (359)
Q Consensus 245 g~i~iw~~~~~~ 256 (359)
| .+|-+.+...
T Consensus 277 G-~ki~~~~~~~ 287 (339)
T KOG0280|consen 277 G-AKILDSSDKV 287 (339)
T ss_pred C-ceEEEecccc
Confidence 5 7888877654
No 261
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.40 E-value=9.1e-10 Score=92.39 Aligned_cols=236 Identities=9% Similarity=0.103 Sum_probs=151.3
Q ss_pred CceEEEEEccCCCEEEEec-C-----------CceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCC
Q 018248 7 ITIHHLALNQDHGCFATGT-E-----------TGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQ 74 (359)
Q Consensus 7 ~~v~~~~~s~~g~~l~~~~-d-----------~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~ 74 (359)
..|.-+.|||+.+||++=+ . ..+.|||+.+|..........+....-....|++++++++-..+
T Consensus 250 p~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~---- 325 (698)
T KOG2314|consen 250 PGVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTG---- 325 (698)
T ss_pred CCceeeecCCccceEEEecCCccccCcccCCCceEEEEEccccchhcceeccCCCccccceEEeccCCceeEEecc----
Confidence 4578899999999998853 1 45999999998766333221122233456789999999998873
Q ss_pred CCeEEEEECCCccEEeeec-cCcceeEEEEecceeEEE--------ecCeEEEEEcccceeeeeEeccCCCceeeeeecC
Q 018248 75 SNKVMIWDDHENRYLGELS-FRSEVKNVRLRRDRIVVV--------LNQKVYVYNFTDLKLVDQIETVVNPTGLCDVSQN 145 (359)
Q Consensus 75 d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~--------~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (359)
..|.||+..+-.++..-. ....|....|+|.+++++ .-.++.+..+.+++.+++-..+. +..+.+.+.
T Consensus 326 -~sisIyEtpsf~lld~Kslki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfn--VsDckLhWQ 402 (698)
T KOG2314|consen 326 -NSISIYETPSFMLLDKKSLKISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFN--VSDCKLHWQ 402 (698)
T ss_pred -ceEEEEecCceeeecccccCCccccCcccCCCcceEEEEcccccCCcceEEEEecCccceeeecccee--eeccEEEec
Confidence 789999977654443333 446789999999999998 23467778887777766654432 334444444
Q ss_pred CCccEEEecC---------CCCeeEEEEecCCeee-EEeecccccccEEEEccCCcEEEEEeC---CCCeEEEEEcCC-C
Q 018248 146 AGPMVMACPG---------LLKGQVRVEDYGTKKS-KYITAHASRIASIAMTLDGRFVATASS---KGTLIRVFNTMD-G 211 (359)
Q Consensus 146 ~~~~~l~~~g---------~~d~~v~~~~~~~~~~-~~~~~~~~~i~~~~~s~~~~~l~~~~~---dg~~i~iwd~~~-~ 211 (359)
.++-+|+.-- +.-..+.|...+.+.+ .....-...|...+|-|.|..+++-+. ..+ +.+|.+++ .
T Consensus 403 k~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~velke~vi~FaWEP~gdkF~vi~g~~~k~t-vsfY~~e~~~ 481 (698)
T KOG2314|consen 403 KSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVELKESVIAFAWEPHGDKFAVISGNTVKNT-VSFYAVETNI 481 (698)
T ss_pred cCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceeeecchheeeeeeccCCCeEEEEEccccccc-eeEEEeecCC
Confidence 4444454310 0011122222221111 111123557788899999997766543 235 88998773 2
Q ss_pred ---cEEEEeecCCCCcceEEEEecCCCCEEEEEc---CCCcEEEEEccC
Q 018248 212 ---SLLQEMRRGAERAEIYSLAFSSNAQWLAASS---DKGTVHVFGLKV 254 (359)
Q Consensus 212 ---~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~---~dg~i~iw~~~~ 254 (359)
+++..+. ....+.+.|+|.|++++.+. ..|.+.++|+..
T Consensus 482 ~~~~lVk~~d----k~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~ 526 (698)
T KOG2314|consen 482 KKPSLVKELD----KKFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDY 526 (698)
T ss_pred Cchhhhhhhc----ccccceEEEcCCCcEEEEEEecccccceEEEecch
Confidence 2333343 35678999999999988764 568899999885
No 262
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.39 E-value=1.2e-11 Score=101.76 Aligned_cols=257 Identities=14% Similarity=0.125 Sum_probs=168.8
Q ss_pred CCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEECCCccEEeeec--cCcceeEEEEecce--eEEE---ecCeEEEEE
Q 018248 48 NPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDDHENRYLGELS--FRSEVKNVRLRRDR--IVVV---LNQKVYVYN 120 (359)
Q Consensus 48 ~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~--~~~~v~~~~~~~~~--~~~~---~d~~i~i~d 120 (359)
+|.+.|..+.+...+..++..+ .|..|.+||...++....+. |...|....|-|.. +.++ .||.+++=.
T Consensus 140 ~H~GcVntV~FN~~Gd~l~SgS----DD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~ 215 (559)
T KOG1334|consen 140 KHKGCVNTVHFNQRGDVLASGS----DDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSE 215 (559)
T ss_pred CCCCccceeeecccCceeeccC----ccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceeeee
Confidence 7899999888877777666555 68999999999998888886 77888777787742 3333 899999877
Q ss_pred c-cccee--eeeEeccCCCceeeeeecCCCccEEEecCCCCeeEEE-EecCCeee---EEeecccc---cccEEEEccCC
Q 018248 121 F-TDLKL--VDQIETVVNPTGLCDVSQNAGPMVMACPGLLKGQVRV-EDYGTKKS---KYITAHAS---RIASIAMTLDG 190 (359)
Q Consensus 121 ~-~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~v~~-~~~~~~~~---~~~~~~~~---~i~~~~~s~~~ 190 (359)
+ .++.. ...+..|.+++..+++-|+....++.+ +.|+.+.- +.....+. ..-..+.. ....++..|-.
T Consensus 216 i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~--geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~n 293 (559)
T KOG1334|consen 216 ILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSC--GEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRN 293 (559)
T ss_pred eccccceecceecccccCccceeeecCCCCCccccc--ccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCC
Confidence 7 33333 345567888999999999887765544 46777765 33333222 22223333 56788888866
Q ss_pred c-EEEEEeCCCCeEEEEEcCCCcE------EEEeecC----CCCcceEEEEecCCCCEEEEEcCCCcEEEEEccCCCCCC
Q 018248 191 R-FVATASSKGTLIRVFNTMDGSL------LQEMRRG----AERAEIYSLAFSSNAQWLAASSDKGTVHVFGLKVDSGSP 259 (359)
Q Consensus 191 ~-~l~~~~~dg~~i~iwd~~~~~~------~~~~~~~----~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~ 259 (359)
. .+++++.|.. +++||.+.-.. +..+..+ .....|++++|+.++.-|.++-.|-.|++|.-..+....
T Consensus 294 t~~faVgG~dqf-~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~ 372 (559)
T KOG1334|consen 294 TNEFAVGGSDQF-ARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSE 372 (559)
T ss_pred ccccccCChhhh-hhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccCCC
Confidence 5 8899999998 99999875322 2222211 234579999999887766667777789999443332110
Q ss_pred CCCccccCCCCCccCCCCCceeeeeEeeeecceEEecccceeEEeecCCcEEEee-ecccCCEEEEEecCCeEEEEEeCC
Q 018248 260 GTSKLHSASEPNLSSKNSSAISSFRFIRGVLPKYFSSKWSMAQFRLPENVQYLVG-FGRQNNTIVIVGLDGSYYKCEFDP 338 (359)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~s~~~~~l~~~~~dg~i~v~~~~~ 338 (359)
.. .......+.++.++.++.- ..|..+- |.|...++++|++-|.|++|+-..
T Consensus 373 ---p~-----------------~~s~~~~~~k~vYKGHrN~-------~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t 425 (559)
T KOG1334|consen 373 ---PD-----------------PSSPREQYVKRVYKGHRNS-------RTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKT 425 (559)
T ss_pred ---CC-----------------CCcchhhccchhhcccccc-------cccceeeeccCccceEEecCccceEEEEecch
Confidence 00 0000011222223333221 2344454 578889999999999999996543
No 263
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.37 E-value=7.9e-10 Score=91.77 Aligned_cols=234 Identities=12% Similarity=0.122 Sum_probs=159.6
Q ss_pred EEEEccCCCEEEEecCCceEEEEcC-CCcceeeeecccCCCCceeEEEEeccCCE--EEEEec-CCCCCCeEEEEECCCc
Q 018248 11 HLALNQDHGCFATGTETGFRVYLSD-PYKPIMRRDFDRNPRGGTQLVSMLFRSNI--ICLVNS-GPHQSNKVMIWDDHEN 86 (359)
Q Consensus 11 ~~~~s~~g~~l~~~~d~~i~iw~~~-~~~~~~~~~~~~~h~~~v~~~~~~~~~~~--~~~~~~-~~~~d~~i~iwd~~~~ 86 (359)
-+.|+.+.+++|--....+.|+++. ...+.....++ ...+...+++|.++. +++... -...+..+++|.+..+
T Consensus 136 ~~k~s~~D~y~ARvv~~sl~i~e~t~n~~~~p~~~lr---~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~ 212 (561)
T COG5354 136 VLKFSIDDKYVARVVGSSLYIHEITDNIEEHPFKNLR---PVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKN 212 (561)
T ss_pred eeeeeecchhhhhhccCeEEEEecCCccccCchhhcc---ccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCC
Confidence 5677777777765556778899852 22222222332 345555666665433 222221 1116789999999988
Q ss_pred cEEeeec-cCcceeEEEEecceeEEE--------------ecCeEEEEEcccceeeeeEeccCCCceeeeeecCCCccEE
Q 018248 87 RYLGELS-FRSEVKNVRLRRDRIVVV--------------LNQKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAGPMVM 151 (359)
Q Consensus 87 ~~~~~~~-~~~~v~~~~~~~~~~~~~--------------~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 151 (359)
..+.+.. ....=..+.|++.|.+++ ....+++++++.. .+.......++|...+|.|.++.+.+
T Consensus 213 s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~-~i~V~~~~~~pVhdf~W~p~S~~F~v 291 (561)
T COG5354 213 SVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITER-SIPVEKDLKDPVHDFTWEPLSSRFAV 291 (561)
T ss_pred CeeeeeeeEeecccEEEEecCCceEEEEEEEeeecccceeccceEEEEeeccc-ccceeccccccceeeeecccCCceeE
Confidence 8777766 555556788999888776 2467888988533 23332245778899999999998777
Q ss_pred EecCCCCeeEEEEecCCeeeEEeecccccccEEEEccCCcEEEEEeCC---CCeEEEEEcCCCcEEE-EeecCCCCcceE
Q 018248 152 ACPGLLKGQVRVEDYGTKKSKYITAHASRIASIAMTLDGRFVATASSK---GTLIRVFNTMDGSLLQ-EMRRGAERAEIY 227 (359)
Q Consensus 152 ~~~g~~d~~v~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d---g~~i~iwd~~~~~~~~-~~~~~~~~~~i~ 227 (359)
++ |...-.+.+++.+++....+ ....-+.+.|+|.+++++.++-| |. |.+||........ .+.+ ....
T Consensus 292 i~-g~~pa~~s~~~lr~Nl~~~~--Pe~~rNT~~fsp~~r~il~agF~nl~gn-i~i~~~~~rf~~~~~~~~----~n~s 363 (561)
T COG5354 292 IS-GYMPASVSVFDLRGNLRFYF--PEQKRNTIFFSPHERYILFAGFDNLQGN-IEIFDPAGRFKVAGAFNG----LNTS 363 (561)
T ss_pred Ee-cccccceeecccccceEEec--CCcccccccccCcccEEEEecCCccccc-eEEeccCCceEEEEEeec----CCce
Confidence 76 77888888888888744443 34555778899999999987754 56 9999976655444 5543 2445
Q ss_pred EEEecCCCCEEEEEc------CCCcEEEEEccCCC
Q 018248 228 SLAFSSNAQWLAASS------DKGTVHVFGLKVDS 256 (359)
Q Consensus 228 ~~~~s~~~~~l~~~~------~dg~i~iw~~~~~~ 256 (359)
-+.|+||++++.+.. .|..+.|||+....
T Consensus 364 ~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g~~ 398 (561)
T COG5354 364 YCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYGAK 398 (561)
T ss_pred EeeccCCceEEEecCCCcccccCcceEEEEecCch
Confidence 678999999987764 46789999998765
No 264
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.36 E-value=2.9e-09 Score=99.91 Aligned_cols=242 Identities=14% Similarity=0.129 Sum_probs=148.7
Q ss_pred CceEEEEEccCCCEEEEec--CC---ceEEEEcCCCc-ceeeeecc----cCCCCceeEEEEeccCCEEEEEecCCCCCC
Q 018248 7 ITIHHLALNQDHGCFATGT--ET---GFRVYLSDPYK-PIMRRDFD----RNPRGGTQLVSMLFRSNIICLVNSGPHQSN 76 (359)
Q Consensus 7 ~~v~~~~~s~~g~~l~~~~--d~---~i~iw~~~~~~-~~~~~~~~----~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~ 76 (359)
..+...+|.+....+.++. .. .|.+-...... ......+. ......+..+.+..+.+.++++. .+|
T Consensus 22 ~~~~~~~~d~~sd~i~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~~~~~~~~~~ivs~~yl~d~~~l~~~~----~~G 97 (928)
T PF04762_consen 22 LPITATAFDSDSDSIYFVLGPNEIDYVIELDRFSQDGSVEVLASWDAPLPDDPNDKIVSFQYLADSESLCIAL----ASG 97 (928)
T ss_pred cccceEEEecCCCeEEEEECCCCcceEEEEEeeccCCceeEEEeccccCCcCCCCcEEEEEeccCCCcEEEEE----CCc
Confidence 4677788887665553333 22 23343333222 11122221 01235566677777777777777 568
Q ss_pred eEEEE----ECCCccEEeeeccCcceeEEEEecceeEEE---ecCeEEEEEccc------------------------ce
Q 018248 77 KVMIW----DDHENRYLGELSFRSEVKNVRLRRDRIVVV---LNQKVYVYNFTD------------------------LK 125 (359)
Q Consensus 77 ~i~iw----d~~~~~~~~~~~~~~~v~~~~~~~~~~~~~---~d~~i~i~d~~~------------------------~~ 125 (359)
.|.+. +..+......-..+..|.+++||||+.+++ .++++.+.+- + |+
T Consensus 98 di~~~~~~~~~~~~~~E~VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~-~fd~i~E~~l~~~~~~~~~~VsVGWGk 176 (928)
T PF04762_consen 98 DIILVREDPDPDEDEIEIVGSVDSGILAASWSPDEELLALVTGEGNLLLMTR-DFDPISEVPLDSDDFGESKHVSVGWGK 176 (928)
T ss_pred eEEEEEccCCCCCceeEEEEEEcCcEEEEEECCCcCEEEEEeCCCEEEEEec-cceEEEEeecCccccCCCceeeeccCc
Confidence 99988 544443332223678899999999998888 5667666542 1 11
Q ss_pred eeeeEeccC----------------------CCceeeeeecCCCccEEEecCC--C---CeeEEEEecCCeeeEEeeccc
Q 018248 126 LVDQIETVV----------------------NPTGLCDVSQNAGPMVMACPGL--L---KGQVRVEDYGTKKSKYITAHA 178 (359)
Q Consensus 126 ~~~~~~~~~----------------------~~~~~~~~~~~~~~~~l~~~g~--~---d~~v~~~~~~~~~~~~~~~~~ 178 (359)
...+|.+.. ..-..+.+++.|++.++|++.- . ...++||++++.....-..-.
T Consensus 177 KeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~ReG~L~stSE~v~ 256 (928)
T PF04762_consen 177 KETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSREGELQSTSEPVD 256 (928)
T ss_pred ccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCCceEEeccccCC
Confidence 112221100 0012345556566656665322 1 367888999976554444444
Q ss_pred ccccEEEEccCCcEEEEEeC---CCCeEEEEEcCCCcEEEEeecC--CCCcceEEEEecCCCCEEEEEcCCCcEEEEEcc
Q 018248 179 SRIASIAMTLDGRFVATASS---KGTLIRVFNTMDGSLLQEMRRG--AERAEIYSLAFSSNAQWLAASSDKGTVHVFGLK 253 (359)
Q Consensus 179 ~~i~~~~~s~~~~~l~~~~~---dg~~i~iwd~~~~~~~~~~~~~--~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~ 253 (359)
+--.+++|.|.|++||+... ... |.+|. ++|-.-.+|... .....|..+.|++|+..||..-.|. |.+|-..
T Consensus 257 gLe~~l~WrPsG~lIA~~q~~~~~~~-VvFfE-rNGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~ 333 (928)
T PF04762_consen 257 GLEGALSWRPSGNLIASSQRLPDRHD-VVFFE-RNGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRS 333 (928)
T ss_pred CccCCccCCCCCCEEEEEEEcCCCcE-EEEEe-cCCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEee
Confidence 55568899999999998865 233 77777 566655555442 2456899999999999999987665 9999988
Q ss_pred CCC
Q 018248 254 VDS 256 (359)
Q Consensus 254 ~~~ 256 (359)
+-.
T Consensus 334 NYH 336 (928)
T PF04762_consen 334 NYH 336 (928)
T ss_pred CCE
Confidence 754
No 265
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.36 E-value=1.3e-09 Score=92.16 Aligned_cols=182 Identities=14% Similarity=0.225 Sum_probs=134.6
Q ss_pred CEEEEEecCCCCCCeEEEEECCCccEEeeec----cCcceeEEEEe------c--------------ceeEEE---ecCe
Q 018248 63 NIICLVNSGPHQSNKVMIWDDHENRYLGELS----FRSEVKNVRLR------R--------------DRIVVV---LNQK 115 (359)
Q Consensus 63 ~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~----~~~~v~~~~~~------~--------------~~~~~~---~d~~ 115 (359)
.++++.. .||.+++|+..+++..+.+. ..+...+..|. | +...++ ..|.
T Consensus 6 ~~~A~~~----~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~ 81 (541)
T KOG4547|consen 6 DYFALST----GDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGS 81 (541)
T ss_pred heEeecC----CCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCcc
Confidence 4566666 68999999999998888875 33445555553 1 122233 6789
Q ss_pred EEEEEcccceeeeeEec--cCCCceeeeeecCCCccEEEecCCCCeeEEEEecCC-eeeEEeecccccccEEEEccCCcE
Q 018248 116 VYVYNFTDLKLVDQIET--VVNPTGLCDVSQNAGPMVMACPGLLKGQVRVEDYGT-KKSKYITAHASRIASIAMTLDGRF 192 (359)
Q Consensus 116 i~i~d~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~g~~d~~v~~~~~~~-~~~~~~~~~~~~i~~~~~s~~~~~ 192 (359)
|.+|+...++.-..+.+ |.+.+.++.++.+-. .+- +++.|+.+..|.... ..++.....+..+.+++.+|||..
T Consensus 82 v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~--ciy-S~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~ 158 (541)
T KOG4547|consen 82 VLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLG--CIY-SVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKI 158 (541)
T ss_pred EEEEEecCCeEEEEEecCCCCCcceeeecccccC--ceE-ecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCCE
Confidence 99999999998888864 555565554443332 233 355788888877765 556667778888999999999999
Q ss_pred EEEEeCCCCeEEEEEcCCCcEEEEeecCCCCcceEEEEecCC-----CCEEEE-EcCCCcEEEEEccCCC
Q 018248 193 VATASSKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSN-----AQWLAA-SSDKGTVHVFGLKVDS 256 (359)
Q Consensus 193 l~~~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~-----~~~l~~-~~~dg~i~iw~~~~~~ 256 (359)
|++++.. |++||+++++.+..|.+ |.++|.++.|..+ |.++.+ ...+..+.+|-+....
T Consensus 159 l~~as~~---ik~~~~~~kevv~~ftg--h~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~~~ 223 (541)
T KOG4547|consen 159 LLTASRQ---IKVLDIETKEVVITFTG--HGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEKED 223 (541)
T ss_pred EEeccce---EEEEEccCceEEEEecC--CCcceEEEEEEEeccccccceeeeccccccceeEEEEEccc
Confidence 9998765 99999999999999998 8899999999876 666554 4455668899887744
No 266
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.35 E-value=3.8e-09 Score=91.16 Aligned_cols=196 Identities=9% Similarity=0.078 Sum_probs=125.9
Q ss_pred CceeEEEEeccCCE-EEEEecCCCCCCeEEEEECCCccEEeeeccCcceeEEEEecceeEEE------ecCeEEEEEccc
Q 018248 51 GGTQLVSMLFRSNI-ICLVNSGPHQSNKVMIWDDHENRYLGELSFRSEVKNVRLRRDRIVVV------LNQKVYVYNFTD 123 (359)
Q Consensus 51 ~~v~~~~~~~~~~~-~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~------~d~~i~i~d~~~ 123 (359)
+......|+|+++. +++.+... .+..|.++|+.+++.......++......|+|||..++ .+..|+++|+.+
T Consensus 188 ~~~~~p~wSpDG~~~i~y~s~~~-~~~~Iyv~dl~tg~~~~lt~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~ 266 (419)
T PRK04043 188 GLNIFPKWANKEQTAFYYTSYGE-RKPTLYKYNLYTGKKEKIASSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNT 266 (419)
T ss_pred CCeEeEEECCCCCcEEEEEEccC-CCCEEEEEECCCCcEEEEecCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCC
Confidence 35566789999985 55555432 24789999998887666555666667788999997666 346799999877
Q ss_pred ceeeeeEeccCCCceeeeeecCCCccEEEecCCCCeeEEEEecCCeeeEEeecccccccEEEEccCCcEEEEEeCC----
Q 018248 124 LKLVDQIETVVNPTGLCDVSQNAGPMVMACPGLLKGQVRVEDYGTKKSKYITAHASRIASIAMTLDGRFVATASSK---- 199 (359)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~v~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d---- 199 (359)
++. ..+...........|+|+++.+++.+.......|++.+..+...+.+...... ...|+|||++|+..+..
T Consensus 267 g~~-~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~g~~--~~~~SPDG~~Ia~~~~~~~~~ 343 (419)
T PRK04043 267 KTL-TQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFHGKN--NSSVSTYKNYIVYSSRETNNE 343 (419)
T ss_pred CcE-EEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccCCCc--CceECCCCCEEEEEEcCCCcc
Confidence 653 33433333234568999999866665322223566666665555444322212 24899999988776643
Q ss_pred -----CCeEEEEEcCCCcEEEEeecCCCCcceEEEEecCCCCEEEEEcCC-C--cEEEEEccCC
Q 018248 200 -----GTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSNAQWLAASSDK-G--TVHVFGLKVD 255 (359)
Q Consensus 200 -----g~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d-g--~i~iw~~~~~ 255 (359)
.. |.+.|+.+++.. .+... .......|+|||+.|+..+.+ + .+.+.+++..
T Consensus 344 ~~~~~~~-I~v~d~~~g~~~-~LT~~---~~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g~ 402 (419)
T PRK04043 344 FGKNTFN-LYLISTNSDYIR-RLTAN---GVNQFPRFSSDGGSIMFIKYLGNQSALGIIRLNYN 402 (419)
T ss_pred cCCCCcE-EEEEECCCCCeE-ECCCC---CCcCCeEECCCCCEEEEEEccCCcEEEEEEecCCC
Confidence 24 888898887654 34322 123358899999988766543 3 3556666543
No 267
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.34 E-value=3.1e-09 Score=87.70 Aligned_cols=184 Identities=14% Similarity=0.214 Sum_probs=131.6
Q ss_pred eccCCEEEEEecCCCCCCeEEEEECCCccEEeeecc----------Cccee---EEE-Eec-ceeEEE--ecCeEEEEEc
Q 018248 59 LFRSNIICLVNSGPHQSNKVMIWDDHENRYLGELSF----------RSEVK---NVR-LRR-DRIVVV--LNQKVYVYNF 121 (359)
Q Consensus 59 ~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~----------~~~v~---~~~-~~~-~~~~~~--~d~~i~i~d~ 121 (359)
..++..+++.. -|.|.+||..+.+.. .+.. ...+. -+. |++ +|.+++ ..|...+.+.
T Consensus 275 nsDGkrIvFq~-----~GdIylydP~td~le-kldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VSRGkaFi~~~ 348 (668)
T COG4946 275 NSDGKRIVFQN-----AGDIYLYDPETDSLE-KLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVSRGKAFIMRP 348 (668)
T ss_pred CCCCcEEEEec-----CCcEEEeCCCcCcce-eeecCCccccccccccccCHHHhhhhhccCCCcEEEEEecCcEEEECC
Confidence 34566666654 388999997765322 2210 00011 111 222 455555 8888888887
Q ss_pred ccceeeeeEeccCCCceeeeeecCCCccEEEecCCCCe-eEEEEecCCeeeEEeecccccccEEEEccCCcEEEEEeCCC
Q 018248 122 TDLKLVDQIETVVNPTGLCDVSQNAGPMVMACPGLLKG-QVRVEDYGTKKSKYITAHASRIASIAMTLDGRFVATASSKG 200 (359)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~-~v~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg 200 (359)
..+-.++. ++...+....+..+++..++ |..|| .+-+++..+...+.+...-+.|.++..+|+|++++.+....
T Consensus 349 ~~~~~iqv--~~~~~VrY~r~~~~~e~~vi---gt~dgD~l~iyd~~~~e~kr~e~~lg~I~av~vs~dGK~~vvaNdr~ 423 (668)
T COG4946 349 WDGYSIQV--GKKGGVRYRRIQVDPEGDVI---GTNDGDKLGIYDKDGGEVKRIEKDLGNIEAVKVSPDGKKVVVANDRF 423 (668)
T ss_pred CCCeeEEc--CCCCceEEEEEccCCcceEE---eccCCceEEEEecCCceEEEeeCCccceEEEEEcCCCcEEEEEcCce
Confidence 55544433 34555777778778776333 44677 78889999999999998899999999999999999999888
Q ss_pred CeEEEEEcCCCcEEEEeecCCCCcceEEEEecCCCCEEEEEcCCC----cEEEEEccCCC
Q 018248 201 TLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSNAQWLAASSDKG----TVHVFGLKVDS 256 (359)
Q Consensus 201 ~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg----~i~iw~~~~~~ 256 (359)
. |.+.|+.++.....-+. ..+-|+.++|||+++++|-+--+| .|+++|+..++
T Consensus 424 e-l~vididngnv~~idkS--~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~K 480 (668)
T COG4946 424 E-LWVIDIDNGNVRLIDKS--EYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGK 480 (668)
T ss_pred E-EEEEEecCCCeeEeccc--ccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCe
Confidence 8 99999999986544333 457899999999999999887665 58999999876
No 268
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.31 E-value=1.5e-08 Score=97.10 Aligned_cols=240 Identities=13% Similarity=0.117 Sum_probs=149.2
Q ss_pred EEEEEccC-CCEEEEec-CCceEEEEcCCCcceeeeecc-c---------CCCCceeEEEEeccCCEEEEEecCCCCCCe
Q 018248 10 HHLALNQD-HGCFATGT-ETGFRVYLSDPYKPIMRRDFD-R---------NPRGGTQLVSMLFRSNIICLVNSGPHQSNK 77 (359)
Q Consensus 10 ~~~~~s~~-g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~-~---------~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~ 77 (359)
..++++++ ++++++-. ++.|++||.+........... . ++-.....+++.++++.+.++.. ..+.
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt---~n~~ 647 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLDGNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADT---ENHA 647 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCCCCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeC---CCce
Confidence 46788875 55555555 788999998743211111100 0 00112355666666666555543 3478
Q ss_pred EEEEECCCccEEeeecc------------------CcceeEEEEec-ceeEEE---ecCeEEEEEcccceeeeeEecc--
Q 018248 78 VMIWDDHENRYLGELSF------------------RSEVKNVRLRR-DRIVVV---LNQKVYVYNFTDLKLVDQIETV-- 133 (359)
Q Consensus 78 i~iwd~~~~~~~~~~~~------------------~~~v~~~~~~~-~~~~~~---~d~~i~i~d~~~~~~~~~~~~~-- 133 (359)
|+++|..++.. ..+.. -.....++++| ++.+++ .++.|++||..++... .+.+.
T Consensus 648 Ir~id~~~~~V-~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~-~~~G~G~ 725 (1057)
T PLN02919 648 LREIDFVNETV-RTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTR-VFSGDGY 725 (1057)
T ss_pred EEEEecCCCEE-EEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEE-EEecCCc
Confidence 99999776543 22210 11346789999 454444 6789999998766432 22111
Q ss_pred -------------CCCceeeeeecCCCccEEEecCCCCeeEEEEecCCeeeEEeec----------------------cc
Q 018248 134 -------------VNPTGLCDVSQNAGPMVMACPGLLKGQVRVEDYGTKKSKYITA----------------------HA 178 (359)
Q Consensus 134 -------------~~~~~~~~~~~~~~~~~l~~~g~~d~~v~~~~~~~~~~~~~~~----------------------~~ 178 (359)
......++++|+++.++++- ..++.|++|+........+.+ .-
T Consensus 726 ~~~~~g~~~~~~~~~~P~GIavspdG~~LYVAD--s~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l 803 (1057)
T PLN02919 726 ERNLNGSSGTSTSFAQPSGISLSPDLKELYIAD--SESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLL 803 (1057)
T ss_pred cccCCCCccccccccCccEEEEeCCCCEEEEEE--CCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhc
Confidence 01223478889887766554 457889998765432221110 01
Q ss_pred ccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcEEEEeecCC-----------CCcceEEEEecCCCCEEEEEcCCCcE
Q 018248 179 SRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRRGA-----------ERAEIYSLAFSSNAQWLAASSDKGTV 247 (359)
Q Consensus 179 ~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~~~~~~~~~-----------~~~~i~~~~~s~~~~~l~~~~~dg~i 247 (359)
.....++++++|+++++-+.++. |++||..++........+. .-.....++++++|+++++-+.++.|
T Consensus 804 ~~P~Gvavd~dG~LYVADs~N~r-IrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~I 882 (1057)
T PLN02919 804 QHPLGVLCAKDGQIYVADSYNHK-IKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLI 882 (1057)
T ss_pred cCCceeeEeCCCcEEEEECCCCE-EEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEE
Confidence 13468999999998888888888 9999988776553322110 11256789999999999988899999
Q ss_pred EEEEccCCCC
Q 018248 248 HVFGLKVDSG 257 (359)
Q Consensus 248 ~iw~~~~~~~ 257 (359)
++||+++++.
T Consensus 883 rvid~~~~~~ 892 (1057)
T PLN02919 883 RYLDLNKGEA 892 (1057)
T ss_pred EEEECCCCcc
Confidence 9999988754
No 269
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.30 E-value=6e-10 Score=88.03 Aligned_cols=196 Identities=10% Similarity=0.161 Sum_probs=134.2
Q ss_pred CCCceEEEEEccCCCEEEEec-CCceEEEEcCC-Cc-ceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEE
Q 018248 5 DPITIHHLALNQDHGCFATGT-ETGFRVYLSDP-YK-PIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIW 81 (359)
Q Consensus 5 h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~-~~-~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iw 81 (359)
-+.++++++++++.+.|.+|- .|++.-+.+.. .+ ....+.. ..|...+..+-++..+..++..+ .|..+.--
T Consensus 67 mP~~~~~~~y~~e~~~L~vg~~ngtvtefs~sedfnkm~~~r~~-~~h~~~v~~~if~~~~e~V~s~~----~dk~~~~h 141 (404)
T KOG1409|consen 67 MPSPCSAMEYVSESRRLYVGQDNGTVTEFALSEDFNKMTFLKDY-LAHQARVSAIVFSLTHEWVLSTG----KDKQFAWH 141 (404)
T ss_pred CCCCceEeeeeccceEEEEEEecceEEEEEhhhhhhhcchhhhh-hhhhcceeeEEecCCceeEEEec----cccceEEE
Confidence 467899999999999999999 88888887652 11 1222222 26888888887777777766665 45555444
Q ss_pred ECCCccEEeeeccCcceeEEEEecceeEEE-ecCeEEEEEc--ccceeeeeEeccCCCceeeeeecCCCccEEEecCCCC
Q 018248 82 DDHENRYLGELSFRSEVKNVRLRRDRIVVV-LNQKVYVYNF--TDLKLVDQIETVVNPTGLCDVSQNAGPMVMACPGLLK 158 (359)
Q Consensus 82 d~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~d~~i~i~d~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d 158 (359)
-.+.+..+..+.......++.+.-.-.++- ..|.|....+ .....+.++.+|...+.+++|.+... ++.+ |..|
T Consensus 142 c~e~~~~lg~Y~~~~~~t~~~~d~~~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~--~LfS-g~~d 218 (404)
T KOG1409|consen 142 CTESGNRLGGYNFETPASALQFDALYAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQR--LLFS-GASD 218 (404)
T ss_pred eeccCCcccceEeeccCCCCceeeEEEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCc--EEEe-cccc
Confidence 455555554444332233333322211111 4455555444 45567888889998888888777654 3555 8889
Q ss_pred eeEEEEecCCee--eEEeecccccccEEEEccCCcEEEEEeCCCCeEEEEEcC
Q 018248 159 GQVRVEDYGTKK--SKYITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTM 209 (359)
Q Consensus 159 ~~v~~~~~~~~~--~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~ 209 (359)
..+.+|+..+.. ...+.+|...|..+..-+--+.|.+++.||. |.+|++.
T Consensus 219 ~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~-i~~w~mn 270 (404)
T KOG1409|consen 219 HSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHTRQLISCGEDGG-IVVWNMN 270 (404)
T ss_pred CceEEEeccCCcceeeeeccchhhhhhhhhhhhheeeeeccCCCe-EEEEecc
Confidence 999999988744 4556789999999998888899999999999 9999983
No 270
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.27 E-value=5.1e-11 Score=112.26 Aligned_cols=184 Identities=11% Similarity=0.088 Sum_probs=134.8
Q ss_pred CceeEEEEeccCCEEEEEecCCCCCCeEEEEECCCccEEeeec--cCcceeEEEEecceeEEE---ecCeEEEEEcccce
Q 018248 51 GGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDDHENRYLGELS--FRSEVKNVRLRRDRIVVV---LNQKVYVYNFTDLK 125 (359)
Q Consensus 51 ~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~---~d~~i~i~d~~~~~ 125 (359)
..+..+.-+|...+.+..+ .||.+++|....++.+..++ .+..|+.+.|+.+|+... .||.+.+|.+. .+
T Consensus 2209 ~~v~r~~sHp~~~~Yltgs----~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~-pk 2283 (2439)
T KOG1064|consen 2209 ENVRRMTSHPSDPYYLTGS----QDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQAS-PK 2283 (2439)
T ss_pred CceeeecCCCCCceEEecC----CCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccC-Cc
Confidence 4444444444444444333 68999999999998888887 457888999999887665 89999999985 55
Q ss_pred eeeeEeccCCCceeeeeecCCCccEEEecC--CCCeeEEEEecCCeeeE--EeecccccccEEEEccCCcEEEEEeCCCC
Q 018248 126 LVDQIETVVNPTGLCDVSQNAGPMVMACPG--LLKGQVRVEDYGTKKSK--YITAHASRIASIAMTLDGRFVATASSKGT 201 (359)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g--~~d~~v~~~~~~~~~~~--~~~~~~~~i~~~~~s~~~~~l~~~~~dg~ 201 (359)
+....+.|........|-- .. +++.| +.++.+.+|+....... .-+.|.+.++++++-|..++|++|+.+|.
T Consensus 2284 ~~~s~qchnk~~~Df~Fi~--s~--~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~~qllisggr~G~ 2359 (2439)
T KOG1064|consen 2284 PYTSWQCHNKALSDFRFIG--SL--LATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPKHQLLISGGRKGE 2359 (2439)
T ss_pred ceeccccCCccccceeeee--hh--hhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcCcceEEEecCCcCc
Confidence 5555565655444444433 22 33333 45678888886543221 12789999999999999999999999999
Q ss_pred eEEEEEcCCCcEEEEeecCCCCcceEEEEecCCCCEEEEEcCCCcEEEEEccCCC
Q 018248 202 LIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSNAQWLAASSDKGTVHVFGLKVDS 256 (359)
Q Consensus 202 ~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~ 256 (359)
|++||++..+.++.++. +. ...++++++..|.++||++....
T Consensus 2360 -v~l~D~rqrql~h~~~~-----------~~-~~~~f~~~ss~g~ikIw~~s~~~ 2401 (2439)
T KOG1064|consen 2360 -VCLFDIRQRQLRHTFQA-----------LD-TREYFVTGSSEGNIKIWRLSEFG 2401 (2439)
T ss_pred -EEEeehHHHHHHHHhhh-----------hh-hhheeeccCcccceEEEEccccc
Confidence 99999998888777653 33 46689999999999999998865
No 271
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.25 E-value=3.2e-08 Score=81.90 Aligned_cols=170 Identities=14% Similarity=0.063 Sum_probs=124.1
Q ss_pred CCCEEEEecCCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCC-eEEEEECCCccEEeeeccC
Q 018248 17 DHGCFATGTETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSN-KVMIWDDHENRYLGELSFR 95 (359)
Q Consensus 17 ~g~~l~~~~d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~-~i~iwd~~~~~~~~~~~~~ 95 (359)
+|.+++..+.|...|.+...+-. ..+ +|.+.|....+.-+++..++.. .|| .+-|+|..+++.....+.-
T Consensus 331 ~Gd~ia~VSRGkaFi~~~~~~~~---iqv--~~~~~VrY~r~~~~~e~~vigt----~dgD~l~iyd~~~~e~kr~e~~l 401 (668)
T COG4946 331 NGDYIALVSRGKAFIMRPWDGYS---IQV--GKKGGVRYRRIQVDPEGDVIGT----NDGDKLGIYDKDGGEVKRIEKDL 401 (668)
T ss_pred CCcEEEEEecCcEEEECCCCCee---EEc--CCCCceEEEEEccCCcceEEec----cCCceEEEEecCCceEEEeeCCc
Confidence 68888888888888777654322 223 6788899999988888777766 567 8999998888766666677
Q ss_pred cceeEEEEecceeEEE---ecCeEEEEEcccceeeeeEeccCCCceeeeeecCCCccEEEec---CCCCeeEEEEecCCe
Q 018248 96 SEVKNVRLRRDRIVVV---LNQKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAGPMVMACP---GLLKGQVRVEDYGTK 169 (359)
Q Consensus 96 ~~v~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~---g~~d~~v~~~~~~~~ 169 (359)
+.|.++..+++|+.++ ....|.++|+.+++....=+...+-+....|+|++.. +|.+ |-....|++++..+.
T Consensus 402 g~I~av~vs~dGK~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~nsr~--iAYafP~gy~tq~Iklydm~~~ 479 (668)
T COG4946 402 GNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSRW--IAYAFPEGYYTQSIKLYDMDGG 479 (668)
T ss_pred cceEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcCCcee--EEEecCcceeeeeEEEEecCCC
Confidence 8899999999998766 4557777788888654443444555666777777765 5552 223356788888887
Q ss_pred eeEEeecccccccEEEEccCCcEEEEEe
Q 018248 170 KSKYITAHASRIASIAMTLDGRFVATAS 197 (359)
Q Consensus 170 ~~~~~~~~~~~i~~~~~s~~~~~l~~~~ 197 (359)
.+...+...+.=.+-+|.||+++|.--+
T Consensus 480 Kiy~vTT~ta~DfsPaFD~d~ryLYfLs 507 (668)
T COG4946 480 KIYDVTTPTAYDFSPAFDPDGRYLYFLS 507 (668)
T ss_pred eEEEecCCcccccCcccCCCCcEEEEEe
Confidence 7777766666667889999999876554
No 272
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.24 E-value=6.7e-08 Score=92.68 Aligned_cols=246 Identities=10% Similarity=0.093 Sum_probs=145.6
Q ss_pred EEEeccCCEEEEEecCCCCCCeEEEEECCCccEEeeecc--C-------------cceeEEEEecceeEE--E--ecCeE
Q 018248 56 VSMLFRSNIICLVNSGPHQSNKVMIWDDHENRYLGELSF--R-------------SEVKNVRLRRDRIVV--V--LNQKV 116 (359)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~--~-------------~~v~~~~~~~~~~~~--~--~d~~i 116 (359)
+++....+.++++.. .++.|.++|.. ++.+..+.. . .....+++++++..+ + .++.|
T Consensus 573 vavd~~~g~lyVaDs---~n~rI~v~d~~-G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~I 648 (1057)
T PLN02919 573 LAIDLLNNRLFISDS---NHNRIVVTDLD-GNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHAL 648 (1057)
T ss_pred EEEECCCCeEEEEEC---CCCeEEEEeCC-CCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceE
Confidence 455444444444433 45899999964 544443321 0 135788998876533 3 45789
Q ss_pred EEEEcccceeeeeEecc-----------------CCCceeeeeecCCCccEEEecCCCCeeEEEEecCCeeeEEeecc--
Q 018248 117 YVYNFTDLKLVDQIETV-----------------VNPTGLCDVSQNAGPMVMACPGLLKGQVRVEDYGTKKSKYITAH-- 177 (359)
Q Consensus 117 ~i~d~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~l~~~g~~d~~v~~~~~~~~~~~~~~~~-- 177 (359)
+++|+.++. +.++.+. -.....+++++++..++++. ..++.|++|+.....+..+.+.
T Consensus 649 r~id~~~~~-V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad--~~~~~I~v~d~~~g~v~~~~G~G~ 725 (1057)
T PLN02919 649 REIDFVNET-VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAM--AGQHQIWEYNISDGVTRVFSGDGY 725 (1057)
T ss_pred EEEecCCCE-EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEE--CCCCeEEEEECCCCeEEEEecCCc
Confidence 999986654 3333210 01123578888666555543 3577888877765544433211
Q ss_pred -------------cccccEEEEccCCcEEEEE-eCCCCeEEEEEcCCCcEEEEeec-----------CCC--------Cc
Q 018248 178 -------------ASRIASIAMTLDGRFVATA-SSKGTLIRVFNTMDGSLLQEMRR-----------GAE--------RA 224 (359)
Q Consensus 178 -------------~~~i~~~~~s~~~~~l~~~-~~dg~~i~iwd~~~~~~~~~~~~-----------~~~--------~~ 224 (359)
-.....++++|+++.|+++ +.++. |++||+.++.......+ +.. -.
T Consensus 726 ~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~-Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~ 804 (1057)
T PLN02919 726 ERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSS-IRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQ 804 (1057)
T ss_pred cccCCCCccccccccCccEEEEeCCCCEEEEEECCCCe-EEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhcc
Confidence 1235679999999855554 45567 99999987653211100 000 11
Q ss_pred ceEEEEecCCCCEEEEEcCCCcEEEEEccCCCCCCCCCccccCCCCCccCCCCCceeeeeEeeeecceEEecccceeEEe
Q 018248 225 EIYSLAFSSNAQWLAASSDKGTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSAISSFRFIRGVLPKYFSSKWSMAQFR 304 (359)
Q Consensus 225 ~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (359)
....++++++|+++++-..++.|++||..++..... .. .+..+.. +... ..
T Consensus 805 ~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~ti------aG---~G~~G~~----------------dG~~----~~ 855 (1057)
T PLN02919 805 HPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTL------AG---TGKAGFK----------------DGKA----LK 855 (1057)
T ss_pred CCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEE------ec---cCCcCCC----------------CCcc----cc
Confidence 346899999999888888999999999987652100 00 0000000 0000 00
Q ss_pred ecCCcEEEeeecccCCEEEEEecCCeEEEEEeCC
Q 018248 305 LPENVQYLVGFGRQNNTIVIVGLDGSYYKCEFDP 338 (359)
Q Consensus 305 ~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~ 338 (359)
..-.....++++++|+.+++-+.++.|++|++..
T Consensus 856 a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~ 889 (1057)
T PLN02919 856 AQLSEPAGLALGENGRLFVADTNNSLIRYLDLNK 889 (1057)
T ss_pred cccCCceEEEEeCCCCEEEEECCCCEEEEEECCC
Confidence 0012346899999999888888899999999876
No 273
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=99.23 E-value=5.1e-07 Score=72.91 Aligned_cols=221 Identities=16% Similarity=0.103 Sum_probs=138.1
Q ss_pred EEEeccCCEEEEEecCCCCCCeEEEEECCCccEEeeeccCcceeEEEEe-cceeEEE-ecCeEEEEEcccceeeeeEec-
Q 018248 56 VSMLFRSNIICLVNSGPHQSNKVMIWDDHENRYLGELSFRSEVKNVRLR-RDRIVVV-LNQKVYVYNFTDLKLVDQIET- 132 (359)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~-~~~~~~~-~d~~i~i~d~~~~~~~~~~~~- 132 (359)
..|.+..+.+.++.. ..+.|..|+..+++... +.... ...+.+. +++.+++ ..+.+.++|..+++.......
T Consensus 5 p~~d~~~g~l~~~D~---~~~~i~~~~~~~~~~~~-~~~~~-~~G~~~~~~~g~l~v~~~~~~~~~d~~~g~~~~~~~~~ 79 (246)
T PF08450_consen 5 PVWDPRDGRLYWVDI---PGGRIYRVDPDTGEVEV-IDLPG-PNGMAFDRPDGRLYVADSGGIAVVDPDTGKVTVLADLP 79 (246)
T ss_dssp EEEETTTTEEEEEET---TTTEEEEEETTTTEEEE-EESSS-EEEEEEECTTSEEEEEETTCEEEEETTTTEEEEEEEEE
T ss_pred eEEECCCCEEEEEEc---CCCEEEEEECCCCeEEE-EecCC-CceEEEEccCCEEEEEEcCceEEEecCCCcEEEEeecc
Confidence 345554556666554 35899999987765433 34333 6777777 7887777 777888889988765544443
Q ss_pred ----cCCCceeeeeecCCCccEEEecCCCC------eeEEEEecCCeeeEEeecccccccEEEEccCCcEEEEE-eCCCC
Q 018248 133 ----VVNPTGLCDVSQNAGPMVMACPGLLK------GQVRVEDYGTKKSKYITAHASRIASIAMTLDGRFVATA-SSKGT 201 (359)
Q Consensus 133 ----~~~~~~~~~~~~~~~~~~l~~~g~~d------~~v~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~-~~dg~ 201 (359)
.....+.+++.+++. +++...+... |.+...+..++ ...+...-...+.++|+|+++.|+.+ +..+.
T Consensus 80 ~~~~~~~~~ND~~vd~~G~-ly~t~~~~~~~~~~~~g~v~~~~~~~~-~~~~~~~~~~pNGi~~s~dg~~lyv~ds~~~~ 157 (246)
T PF08450_consen 80 DGGVPFNRPNDVAVDPDGN-LYVTDSGGGGASGIDPGSVYRIDPDGK-VTVVADGLGFPNGIAFSPDGKTLYVADSFNGR 157 (246)
T ss_dssp TTCSCTEEEEEEEE-TTS--EEEEEECCBCTTCGGSEEEEEEETTSE-EEEEEEEESSEEEEEEETTSSEEEEEETTTTE
T ss_pred CCCcccCCCceEEEcCCCC-EEEEecCCCccccccccceEEECCCCe-EEEEecCcccccceEECCcchheeecccccce
Confidence 223345677777766 4443322211 56776666643 44444445667899999999977655 45566
Q ss_pred eEEEEEcCCCcE----EEEe-ecCCCCcceEEEEecCCCCEEEEEcCCCcEEEEEccCCCCCCCCCccccCCCCCccCCC
Q 018248 202 LIRVFNTMDGSL----LQEM-RRGAERAEIYSLAFSSNAQWLAASSDKGTVHVFGLKVDSGSPGTSKLHSASEPNLSSKN 276 (359)
Q Consensus 202 ~i~iwd~~~~~~----~~~~-~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (359)
|..|++..... ...+ ......+..-.+++..+|++.++....+.|.+++.+ ++.
T Consensus 158 -i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~------------------- 216 (246)
T PF08450_consen 158 -IWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKL------------------- 216 (246)
T ss_dssp -EEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCE-------------------
T ss_pred -eEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccE-------------------
Confidence 88888853221 1222 111122357889999999988887788889999977 441
Q ss_pred CCceeeeeEeeeecceEEecccceeEEeecCCcEEEeee-cccCCEEEEEec
Q 018248 277 SSAISSFRFIRGVLPKYFSSKWSMAQFRLPENVQYLVGF-GRQNNTIVIVGL 327 (359)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-s~~~~~l~~~~~ 327 (359)
...+.+|...++.++| .++.+.|++.++
T Consensus 217 -----------------------~~~i~~p~~~~t~~~fgg~~~~~L~vTta 245 (246)
T PF08450_consen 217 -----------------------LREIELPVPRPTNCAFGGPDGKTLYVTTA 245 (246)
T ss_dssp -----------------------EEEEE-SSSSEEEEEEESTTSSEEEEEEB
T ss_pred -----------------------EEEEcCCCCCEEEEEEECCCCCEEEEEeC
Confidence 1124556557889999 467788877654
No 274
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.23 E-value=8.3e-08 Score=82.78 Aligned_cols=218 Identities=15% Similarity=0.132 Sum_probs=132.1
Q ss_pred CCEEEEec-CCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEECCCccEEeeeccCc
Q 018248 18 HGCFATGT-ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDDHENRYLGELSFRS 96 (359)
Q Consensus 18 g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~ 96 (359)
+..+.+++ ++.+..+|..+++......+. ..+.. ....+++.+++.+ .++.+..+|..+|+.+.......
T Consensus 65 ~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~----~~~~~-~p~v~~~~v~v~~----~~g~l~ald~~tG~~~W~~~~~~ 135 (377)
T TIGR03300 65 GGKVYAADADGTVVALDAETGKRLWRVDLD----ERLSG-GVGADGGLVFVGT----EKGEVIALDAEDGKELWRAKLSS 135 (377)
T ss_pred CCEEEEECCCCeEEEEEccCCcEeeeecCC----CCccc-ceEEcCCEEEEEc----CCCEEEEEECCCCcEeeeeccCc
Confidence 55666676 899999999999888777764 22111 1122345555544 57999999999999988776544
Q ss_pred ceeEEEEecceeEEE--ecCeEEEEEcccceeeeeEeccCCCce-----eeeeecCCCccEEEecCCCCeeEEEEe-cCC
Q 018248 97 EVKNVRLRRDRIVVV--LNQKVYVYNFTDLKLVDQIETVVNPTG-----LCDVSQNAGPMVMACPGLLKGQVRVED-YGT 168 (359)
Q Consensus 97 ~v~~~~~~~~~~~~~--~d~~i~i~d~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~l~~~g~~d~~v~~~~-~~~ 168 (359)
.+.+.-...++.+++ .++.++.+|.++++.+..++....... ...+ .++. +.. +..++.+...+ .++
T Consensus 136 ~~~~~p~v~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~--~~~~--v~~-~~~~g~v~ald~~tG 210 (377)
T TIGR03300 136 EVLSPPLVANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVI--ADGG--VLV-GFAGGKLVALDLQTG 210 (377)
T ss_pred eeecCCEEECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEE--ECCE--EEE-ECCCCEEEEEEccCC
Confidence 443322223455555 789999999999998877754332111 1111 1222 222 44567776644 445
Q ss_pred eeeEEeeccc----cc---ccEEEEcc--CCcEEEEEeCCCCeEEEEEcCCCcEEEEeecCCCCcceEEEEecCCCCEEE
Q 018248 169 KKSKYITAHA----SR---IASIAMTL--DGRFVATASSKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSNAQWLA 239 (359)
Q Consensus 169 ~~~~~~~~~~----~~---i~~~~~s~--~~~~l~~~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~ 239 (359)
+.+-...... .. ...+.-+| .+..+++++.+|. +..||..+|+.+...... ...... .++..++
T Consensus 211 ~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~-l~a~d~~tG~~~W~~~~~----~~~~p~--~~~~~vy 283 (377)
T TIGR03300 211 QPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGR-VAALDLRSGRVLWKRDAS----SYQGPA--VDDNRLY 283 (377)
T ss_pred CEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCE-EEEEECCCCcEEEeeccC----CccCce--EeCCEEE
Confidence 4433221100 00 00011111 3456777888998 999999999887666521 112222 2466777
Q ss_pred EEcCCCcEEEEEccCCC
Q 018248 240 ASSDKGTVHVFGLKVDS 256 (359)
Q Consensus 240 ~~~~dg~i~iw~~~~~~ 256 (359)
.++.+|.+..+|..+++
T Consensus 284 v~~~~G~l~~~d~~tG~ 300 (377)
T TIGR03300 284 VTDADGVVVALDRRSGS 300 (377)
T ss_pred EECCCCeEEEEECCCCc
Confidence 88899999999998876
No 275
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.23 E-value=3.6e-08 Score=85.00 Aligned_cols=219 Identities=14% Similarity=0.104 Sum_probs=129.4
Q ss_pred CCCEEEEec-CCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEECCCccEEeeeccC
Q 018248 17 DHGCFATGT-ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDDHENRYLGELSFR 95 (359)
Q Consensus 17 ~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~ 95 (359)
++..+++++ ++.+..+|.++++......+. +.+..... ..++.+++.. .++.+..+|.++|+.+.+++..
T Consensus 104 ~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~----~~~~~~p~-v~~~~v~v~~----~~g~l~a~d~~tG~~~W~~~~~ 174 (377)
T TIGR03300 104 DGGLVFVGTEKGEVIALDAEDGKELWRAKLS----SEVLSPPL-VANGLVVVRT----NDGRLTALDAATGERLWTYSRV 174 (377)
T ss_pred cCCEEEEEcCCCEEEEEECCCCcEeeeeccC----ceeecCCE-EECCEEEEEC----CCCeEEEEEcCCCceeeEEccC
Confidence 456677777 999999999988887766652 22221111 1234455444 5799999999999988877633
Q ss_pred ccee------EEEEecceeEEE--ecCeEEEEEcccceeeeeEeccCC----Cc---eeeeeec--CCCccEEEecCCCC
Q 018248 96 SEVK------NVRLRRDRIVVV--LNQKVYVYNFTDLKLVDQIETVVN----PT---GLCDVSQ--NAGPMVMACPGLLK 158 (359)
Q Consensus 96 ~~v~------~~~~~~~~~~~~--~d~~i~i~d~~~~~~~~~~~~~~~----~~---~~~~~~~--~~~~~~l~~~g~~d 158 (359)
.+.. +.... ++.+++ .++.+..+|.++++.+........ .. ....-+| .++.+++ ++.+
T Consensus 175 ~~~~~~~~~~sp~~~-~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~---~~~~ 250 (377)
T TIGR03300 175 TPALTLRGSASPVIA-DGGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYA---VSYQ 250 (377)
T ss_pred CCceeecCCCCCEEE-CCEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEE---EEcC
Confidence 2221 11222 344444 678999999999987665432110 00 0000011 2333222 2257
Q ss_pred eeEEEEecC-CeeeEEeecccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcEEEEeecCCCCcceEEEEecCCCCE
Q 018248 159 GQVRVEDYG-TKKSKYITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSNAQW 237 (359)
Q Consensus 159 ~~v~~~~~~-~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~ 237 (359)
|.++.++.. ++.+-... . .....+. .++..++.++.+|. +..+|..+++.+...... ......+... .+..
T Consensus 251 g~l~a~d~~tG~~~W~~~-~-~~~~~p~--~~~~~vyv~~~~G~-l~~~d~~tG~~~W~~~~~-~~~~~ssp~i--~g~~ 322 (377)
T TIGR03300 251 GRVAALDLRSGRVLWKRD-A-SSYQGPA--VDDNRLYVTDADGV-VVALDRRSGSELWKNDEL-KYRQLTAPAV--VGGY 322 (377)
T ss_pred CEEEEEECCCCcEEEeec-c-CCccCce--EeCCEEEEECCCCe-EEEEECCCCcEEEccccc-cCCccccCEE--ECCE
Confidence 778776654 33333222 1 1112222 24567778889999 999999999887665321 1111222222 4668
Q ss_pred EEEEcCCCcEEEEEccCCC
Q 018248 238 LAASSDKGTVHVFGLKVDS 256 (359)
Q Consensus 238 l~~~~~dg~i~iw~~~~~~ 256 (359)
|++++.+|.|+++|..+++
T Consensus 323 l~~~~~~G~l~~~d~~tG~ 341 (377)
T TIGR03300 323 LVVGDFEGYLHWLSREDGS 341 (377)
T ss_pred EEEEeCCCEEEEEECCCCC
Confidence 8889999999999998876
No 276
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.21 E-value=6.1e-10 Score=99.90 Aligned_cols=184 Identities=13% Similarity=0.134 Sum_probs=141.6
Q ss_pred CCEEEEEecCCCCCCeEEEEECCCccEEeeeccCccee-----EEEEecceeEEE---ecCeEEEEEcccceeeeeEecc
Q 018248 62 SNIICLVNSGPHQSNKVMIWDDHENRYLGELSFRSEVK-----NVRLRRDRIVVV---LNQKVYVYNFTDLKLVDQIETV 133 (359)
Q Consensus 62 ~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~-----~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~~~ 133 (359)
...+++.. .++.+.+||...+.....+.+..... -+..+++..+++ .-+.|.+|+...-+....+.+|
T Consensus 99 ~k~i~l~~----~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~p~~l~GH 174 (967)
T KOG0974|consen 99 NKKIALVT----SRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDNKPIRLKGH 174 (967)
T ss_pred cceEEEEE----cCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccCCcceeccc
Confidence 34455555 56899999988887777776544322 223456666666 6789999998643333467889
Q ss_pred CCCceeeeeecCCCccEEEecCCCCeeEEEEecCCeeeE--EeecccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCC
Q 018248 134 VNPTGLCDVSQNAGPMVMACPGLLKGQVRVEDYGTKKSK--YITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDG 211 (359)
Q Consensus 134 ~~~~~~~~~~~~~~~~~l~~~g~~d~~v~~~~~~~~~~~--~~~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~ 211 (359)
.+.+..+.++-++.. +++ .++|.++++|..+....- ...+|...+..+.|.|+ .+++++.|.+ .++|+. ++
T Consensus 175 eG~iF~i~~s~dg~~--i~s-~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n--~i~t~gedct-crvW~~-~~ 247 (967)
T KOG0974|consen 175 EGSIFSIVTSLDGRY--IAS-VSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN--RIITVGEDCT-CRVWGV-NG 247 (967)
T ss_pred CCceEEEEEccCCcE--EEE-EecCcceeeeecccccccCcccccccceeEEEEeccc--eeEEeccceE-EEEEec-cc
Confidence 998888888888875 555 568999999998864432 45689999999999998 8999999999 999974 56
Q ss_pred cEEEEeecCCCCcceEEEEecCCCCEEEEEcCCCcEEEEEccCCCC
Q 018248 212 SLLQEMRRGAERAEIYSLAFSSNAQWLAASSDKGTVHVFGLKVDSG 257 (359)
Q Consensus 212 ~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~ 257 (359)
+.+..+..+ ....|..++..++...++|++.|+.+++|++.....
T Consensus 248 ~~l~~y~~h-~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~r~~ 292 (967)
T KOG0974|consen 248 TQLEVYDEH-SGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNGRGL 292 (967)
T ss_pred ceehhhhhh-hhcceeEEEEcCCceEEEeeccCcchhhhhhhcccc
Confidence 666677764 346899999999999999999999999999977553
No 277
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.20 E-value=1e-09 Score=85.65 Aligned_cols=293 Identities=12% Similarity=0.147 Sum_probs=161.5
Q ss_pred CCCCceEEEEEccCCCEEEEec-CCceEEEEcCCCc---ceeeeecccCCC------------CceeEEEEeccC--CEE
Q 018248 4 PDPITIHHLALNQDHGCFATGT-ETGFRVYLSDPYK---PIMRRDFDRNPR------------GGTQLVSMLFRS--NII 65 (359)
Q Consensus 4 ~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~---~~~~~~~~~~h~------------~~v~~~~~~~~~--~~~ 65 (359)
...+.|+++.|...|.+|++|. .|.|.+|.-+... ..+...|+ +|. ..+..+.|.-+. +..
T Consensus 24 tead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQ-she~EFDYLkSleieEKin~I~w~~~t~r~hF 102 (460)
T COG5170 24 TEADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQ-SHELEFDYLKSLEIEEKINAIEWFDDTGRNHF 102 (460)
T ss_pred cccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhc-ccccchhhhhhccHHHHhhheeeecCCCcceE
Confidence 3567899999999999999999 7889999876433 22223333 443 335556665433 334
Q ss_pred EEEecCCCCCCeEEEEECCCccEE--eeeccCcceeEE----EEecceeEEE----ecCeEEEEEcccceeeeeEeccCC
Q 018248 66 CLVNSGPHQSNKVMIWDDHENRYL--GELSFRSEVKNV----RLRRDRIVVV----LNQKVYVYNFTDLKLVDQIETVVN 135 (359)
Q Consensus 66 ~~~~~~~~~d~~i~iwd~~~~~~~--~~~~~~~~v~~~----~~~~~~~~~~----~d~~i~i~d~~~~~~~~~~~~~~~ 135 (359)
++++ .|.+|++|.+...... .+-.....+... ..++....+- .|..|.... ..+. -..|.-
T Consensus 103 Llst----NdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p----~rvy-aNaH~y 173 (460)
T COG5170 103 LLST----NDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKP----CRVY-ANAHPY 173 (460)
T ss_pred EEec----CCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEecc----ceec-ccccee
Confidence 4455 6899999997654221 111111111100 0011111110 111221111 1100 023444
Q ss_pred CceeeeeecCCCccEEEecCCCCeeEEEEecCC--e--eeEEeecc-----cccccEEEEccCC-cEEEEEeCCCCeEEE
Q 018248 136 PTGLCDVSQNAGPMVMACPGLLKGQVRVEDYGT--K--KSKYITAH-----ASRIASIAMTLDG-RFVATASSKGTLIRV 205 (359)
Q Consensus 136 ~~~~~~~~~~~~~~~l~~~g~~d~~v~~~~~~~--~--~~~~~~~~-----~~~i~~~~~s~~~-~~l~~~~~dg~~i~i 205 (359)
.+..+.+..+.+. +.++ .|=.|.+|.... . .+..++.| ..-|++..|+|.. ..+...+..|. |++
T Consensus 174 hiNSiS~NsD~et--~lSa--DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~-Ikl 248 (460)
T COG5170 174 HINSISFNSDKET--LLSA--DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGE-IKL 248 (460)
T ss_pred EeeeeeecCchhe--eeec--cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCc-EEe
Confidence 4555666655543 5542 466677787763 1 22333444 3468899999964 46777888999 999
Q ss_pred EEcCCCcE------EEEee--cCC------CCcceEEEEecCCCCEEEEEcCCCcEEEEEccCCCCCCCCCccccCCCCC
Q 018248 206 FNTMDGSL------LQEMR--RGA------ERAEIYSLAFSSNAQWLAASSDKGTVHVFGLKVDSGSPGTSKLHSASEPN 271 (359)
Q Consensus 206 wd~~~~~~------~~~~~--~~~------~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~ 271 (359)
-|++.... +.... +-. -...|..+.|+++|+++++-+. -+|+|||++..+..-.....++.
T Consensus 249 ~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~pikTi~~h~~---- 323 (460)
T COG5170 249 NDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNPIKTIPMHCD---- 323 (460)
T ss_pred hhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccccCCceeechHHH----
Confidence 99984321 11111 000 1246888999999999987654 57999999886632110000000
Q ss_pred ccCCCCCceeeeeEeeeecceEEecccceeEEeecCCcEEEeeecccCCEEEEEecCCeEEEEEeCC
Q 018248 272 LSSKNSSAISSFRFIRGVLPKYFSSKWSMAQFRLPENVQYLVGFGRQNNTIVIVGLDGSYYKCEFDP 338 (359)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~ 338 (359)
+..-+....+....|.. ..+.||.|.+.+++|+.....-+|..+.
T Consensus 324 --------------l~~~l~d~YEnDaifdk--------FeisfSgd~~~v~sgsy~NNfgiyp~~s 368 (460)
T COG5170 324 --------------LMDELNDVYENDAIFDK--------FEISFSGDDKHVLSGSYSNNFGIYPTDS 368 (460)
T ss_pred --------------HHHHHHhhhhccceeee--------EEEEecCCcccccccccccceeeecccc
Confidence 00001111222222222 3478899999999999988888887544
No 278
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.19 E-value=1.9e-08 Score=85.21 Aligned_cols=186 Identities=14% Similarity=0.153 Sum_probs=132.7
Q ss_pred ccCCCEEEEec-CCceEEEEcCCCcceeeeeccc-CC-CCceeEEEEe----c--------------cCCEEEEEecCCC
Q 018248 15 NQDHGCFATGT-ETGFRVYLSDPYKPIMRRDFDR-NP-RGGTQLVSML----F--------------RSNIICLVNSGPH 73 (359)
Q Consensus 15 s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~-~h-~~~v~~~~~~----~--------------~~~~~~~~~~~~~ 73 (359)
.|-+.++|... ||.+++|+...++.. +.|.+ .| ++...+..|. . ..+..+++-+.
T Consensus 2 ~~~~~~~A~~~~~g~l~iw~t~~~~~~--~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt-- 77 (541)
T KOG4547|consen 2 PPALDYFALSTGDGRLRIWDTAKNQLQ--QEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGT-- 77 (541)
T ss_pred CchhheEeecCCCCeEEEEEccCceee--eeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeec--
Confidence 35567888888 999999999876544 22210 11 1222222221 1 11222222222
Q ss_pred CCCeEEEEECCCccEEeeec---cCcceeEEEEecceeEEE---ecCeEEEEEcccceeeeeEeccCCCceeeeeecCCC
Q 018248 74 QSNKVMIWDDHENRYLGELS---FRSEVKNVRLRRDRIVVV---LNQKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAG 147 (359)
Q Consensus 74 ~d~~i~iwd~~~~~~~~~~~---~~~~v~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (359)
..|.|.+|++..|+.-..+. |.+.|.++.++.+-..+. .|+.+..|+....+.+..+......+..++++|++.
T Consensus 78 ~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~ 157 (541)
T KOG4547|consen 78 PQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGK 157 (541)
T ss_pred CCccEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCC
Confidence 46999999999999888876 889999999888766655 899999999999999999988888888999999976
Q ss_pred ccEEEecCCCCeeEEEEecC-CeeeEEeecccccccEEEEccC-----CcEEEEEe-CCCCeEEEEEcCC
Q 018248 148 PMVMACPGLLKGQVRVEDYG-TKKSKYITAHASRIASIAMTLD-----GRFVATAS-SKGTLIRVFNTMD 210 (359)
Q Consensus 148 ~~~l~~~g~~d~~v~~~~~~-~~~~~~~~~~~~~i~~~~~s~~-----~~~l~~~~-~dg~~i~iwd~~~ 210 (359)
. +++ ..+.|++|+.. .+.+..|++|.++|+++.|--+ |.++.++. .+.. |.+|-+..
T Consensus 158 ~--l~~---as~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~-i~~w~v~~ 221 (541)
T KOG4547|consen 158 I--LLT---ASRQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERG-ITVWVVEK 221 (541)
T ss_pred E--EEe---ccceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccc-eeEEEEEc
Confidence 5 444 25689996665 5778889999999999999876 66665544 3444 78886654
No 279
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.15 E-value=2.8e-10 Score=95.60 Aligned_cols=205 Identities=14% Similarity=0.183 Sum_probs=144.5
Q ss_pred eecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEECCC-------ccEEeeec-cCcceeEEEEecceeEEE-ec
Q 018248 43 RDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDDHE-------NRYLGELS-FRSEVKNVRLRRDRIVVV-LN 113 (359)
Q Consensus 43 ~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~~~-------~~~~~~~~-~~~~v~~~~~~~~~~~~~-~d 113 (359)
..+. ||...+..+.-..+.+..+.++ .|.+|++|.++. ..+..+++ |..+|.++.|-.+.+.++ .|
T Consensus 729 ~nf~-GH~~~iRai~AidNENSFiSAS----kDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~ScD 803 (1034)
T KOG4190|consen 729 CNFT-GHQEKIRAIAAIDNENSFISAS----KDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASCD 803 (1034)
T ss_pred eccc-CcHHHhHHHHhcccccceeecc----CCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeecc
Confidence 3444 8888888877666777777666 799999999763 23555666 999999999999999998 99
Q ss_pred CeEEEEEcccceeeeeEec--cCCCceeeeeecCCCccEEEecCCCCeeEEEEecCC-eeeEEe-----ecccccccEEE
Q 018248 114 QKVYVYNFTDLKLVDQIET--VVNPTGLCDVSQNAGPMVMACPGLLKGQVRVEDYGT-KKSKYI-----TAHASRIASIA 185 (359)
Q Consensus 114 ~~i~i~d~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~g~~d~~v~~~~~~~-~~~~~~-----~~~~~~i~~~~ 185 (359)
+.|.+||.--++++..+.. ..+.+..+..-++-+..++...++...+|++.+.+. .-...+ .+....+.+++
T Consensus 804 ~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~ia 883 (1034)
T KOG4190|consen 804 GGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIA 883 (1034)
T ss_pred CcceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEE
Confidence 9999999877776654432 222333444445433333444356788899855443 322222 34456789999
Q ss_pred EccCCcEEEEEeCCCCeEEEEEcCCCcEEEEeecCCCCcceEEEEecCCCCEEEEEcCCCcEEE-EEccCCC
Q 018248 186 MTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSNAQWLAASSDKGTVHV-FGLKVDS 256 (359)
Q Consensus 186 ~s~~~~~l~~~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i-w~~~~~~ 256 (359)
..+.|+.++.+-..|. |.+.|.++|+.+...+. -......++ .|..+.|+....|.++.| |..-.+.
T Consensus 884 Va~~GN~lAa~LSnGc-i~~LDaR~G~vINswrp--mecdllqla-apsdq~L~~saldHslaVnWhaldgi 951 (1034)
T KOG4190|consen 884 VADKGNKLAAALSNGC-IAILDARNGKVINSWRP--MECDLLQLA-APSDQALAQSALDHSLAVNWHALDGI 951 (1034)
T ss_pred eccCcchhhHHhcCCc-EEEEecCCCceeccCCc--ccchhhhhc-CchhHHHHhhcccceeEeeehhcCCe
Confidence 9999999999999999 99999999998887764 223333333 256677887778888888 8766553
No 280
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=99.11 E-value=2.5e-09 Score=86.25 Aligned_cols=156 Identities=15% Similarity=0.163 Sum_probs=106.6
Q ss_pred EEEEecceeEEE---ecCeEEEEEcccc----eeeeeEeccCCCceeeeeecCCCccEEEecCCCCeeEEEEecCCeeeE
Q 018248 100 NVRLRRDRIVVV---LNQKVYVYNFTDL----KLVDQIETVVNPTGLCDVSQNAGPMVMACPGLLKGQVRVEDYGTKKSK 172 (359)
Q Consensus 100 ~~~~~~~~~~~~---~d~~i~i~d~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~v~~~~~~~~~~~ 172 (359)
.+..++.+++++ .+....+++.... +.+........ ...+.+..+.....++-..+....+.+|.....+..
T Consensus 67 ~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~-~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~~~ 145 (390)
T KOG3914|consen 67 LVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKR-PTAISFIREDTSVLVADKAGDVYSFDILSADSGRCE 145 (390)
T ss_pred ccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeecccC-cceeeeeeccceEEEEeecCCceeeeeecccccCcc
Confidence 344556666666 4445445554322 22222222222 233444444444444443334455555655545566
Q ss_pred EeecccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcEEEEeecCCCCcceEEEEecCCCCEEEEEcCCCcEEEEEc
Q 018248 173 YITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSNAQWLAASSDKGTVHVFGL 252 (359)
Q Consensus 173 ~~~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~ 252 (359)
.+-+|-.-+..++|+||+++|+++..|.. |++-.......+..+..+ |...|..++.-++ +.|++++.|++|++||+
T Consensus 146 ~~lGhvSml~dVavS~D~~~IitaDRDEk-IRvs~ypa~f~IesfclG-H~eFVS~isl~~~-~~LlS~sGD~tlr~Wd~ 222 (390)
T KOG3914|consen 146 PILGHVSMLLDVAVSPDDQFIITADRDEK-IRVSRYPATFVIESFCLG-HKEFVSTISLTDN-YLLLSGSGDKTLRLWDI 222 (390)
T ss_pred hhhhhhhhhheeeecCCCCEEEEecCCce-EEEEecCcccchhhhccc-cHhheeeeeeccC-ceeeecCCCCcEEEEec
Confidence 67899999999999999999999999999 999888777777777655 7789999998754 56899999999999999
Q ss_pred cCCCCCC
Q 018248 253 KVDSGSP 259 (359)
Q Consensus 253 ~~~~~~~ 259 (359)
.+++...
T Consensus 223 ~sgk~L~ 229 (390)
T KOG3914|consen 223 TSGKLLD 229 (390)
T ss_pred ccCCccc
Confidence 9998664
No 281
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.11 E-value=2e-08 Score=77.90 Aligned_cols=176 Identities=11% Similarity=0.115 Sum_probs=117.2
Q ss_pred CCeEEEEECCCccEEe--eec--cCcceeEEEEec---cee-EEE---ecCeEEEEEcccceeeeeEeccC------CCc
Q 018248 75 SNKVMIWDDHENRYLG--ELS--FRSEVKNVRLRR---DRI-VVV---LNQKVYVYNFTDLKLVDQIETVV------NPT 137 (359)
Q Consensus 75 d~~i~iwd~~~~~~~~--~~~--~~~~v~~~~~~~---~~~-~~~---~d~~i~i~d~~~~~~~~~~~~~~------~~~ 137 (359)
-|++.+|++...+.+. +++ ....+..+.|.- ++. .++ ..|.|.+|..........+.+-. ...
T Consensus 45 ~Gkl~Lys~~d~~~~~l~~~q~~dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~ 124 (339)
T KOG0280|consen 45 SGKLHLYSLEDMKLSPLDTLQCTDTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEA 124 (339)
T ss_pred ccceEEEeecccccCccceeeeecccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhheee
Confidence 3778888877665444 222 344566666653 333 222 78889888874443333333211 112
Q ss_pred eeeeeecCCCccEEEecCCCCeeEEE-EecCC--eeeEEeecccccccEEEEccC-CcEEEEEeCCCCeEEEEEcC-CCc
Q 018248 138 GLCDVSQNAGPMVMACPGLLKGQVRV-EDYGT--KKSKYITAHASRIASIAMTLD-GRFVATASSKGTLIRVFNTM-DGS 212 (359)
Q Consensus 138 ~~~~~~~~~~~~~l~~~g~~d~~v~~-~~~~~--~~~~~~~~~~~~i~~~~~s~~-~~~l~~~~~dg~~i~iwd~~-~~~ 212 (359)
-.+.|++.+.. +++ +..+|.+.+ +.... +.++..+.|+-..+...|+.. .+++.+|++|+. +..||++ .++
T Consensus 125 lslD~~~~~~~--i~v-s~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~-l~~~D~R~p~~ 200 (339)
T KOG0280|consen 125 LSLDISTSGTK--IFV-SDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGS-LSCWDIRIPKT 200 (339)
T ss_pred eEEEeeccCce--EEE-EcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCce-EEEEEecCCcc
Confidence 34567777766 444 445777775 33333 445578999999999999853 458899999999 9999999 344
Q ss_pred EEEE-eecCCCCcceEEEEecC-CCCEEEEEcCCCcEEEEEccCCC
Q 018248 213 LLQE-MRRGAERAEIYSLAFSS-NAQWLAASSDKGTVHVFGLKVDS 256 (359)
Q Consensus 213 ~~~~-~~~~~~~~~i~~~~~s~-~~~~l~~~~~dg~i~iw~~~~~~ 256 (359)
.+.. .+. |...|.++.-+| .+.+|++|+.|..|++||.++-.
T Consensus 201 ~i~~n~kv--H~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~ 244 (339)
T KOG0280|consen 201 FIWHNSKV--HTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMG 244 (339)
T ss_pred eeeeccee--eecceEEEecCCCCCceEEEeccccceeeeehhccc
Confidence 4433 222 678899998885 67899999999999999999644
No 282
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=99.10 E-value=3e-08 Score=76.04 Aligned_cols=228 Identities=11% Similarity=0.071 Sum_probs=138.0
Q ss_pred CCEEEEec-CCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCE-EEEEecCCCCCCeEEEEECCCccEEeeec-c
Q 018248 18 HGCFATGT-ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNI-ICLVNSGPHQSNKVMIWDDHENRYLGELS-F 94 (359)
Q Consensus 18 g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~-~~~~~~~~~~d~~i~iwd~~~~~~~~~~~-~ 94 (359)
..+||.|+ .|.+.+|...+.+.....-- .|...|..+.-.-+... +.+++ .|.++++.++.-+....... .
T Consensus 84 c~~la~gG~~g~fd~~~~~tn~~h~~~cd--~snn~v~~~~r~cd~~~~~~i~s----ndht~k~~~~~~~s~~~~~h~~ 157 (344)
T KOG4532|consen 84 CVTLADGGASGQFDLFACNTNDGHLYQCD--VSNNDVTLVKRYCDLKFPLNIAS----NDHTGKTMVVSGDSNKFAVHNQ 157 (344)
T ss_pred ccEEEeccccceeeeecccCcccceeeec--ccccchhhhhhhcccccceeecc----CCcceeEEEEecCcccceeecc
Confidence 35788887 89999999986554332221 24555544332222233 34444 57888888765543332222 1
Q ss_pred CcceeEEEEecceeEEE---ecCeEEEEEccc-ceeeeeEe--ccCCCceeeeeecCCCccEEEecCCCCeeEEEEecCC
Q 018248 95 RSEVKNVRLRRDRIVVV---LNQKVYVYNFTD-LKLVDQIE--TVVNPTGLCDVSQNAGPMVMACPGLLKGQVRVEDYGT 168 (359)
Q Consensus 95 ~~~v~~~~~~~~~~~~~---~d~~i~i~d~~~-~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~g~~d~~v~~~~~~~ 168 (359)
.-.+.++++++++.+.+ ....|..|.+.. ++.+..+. .....-.+..|+.... .+|+ +..||.+.||+.+.
T Consensus 158 ~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~--~FAv-~~Qdg~~~I~DVR~ 234 (344)
T KOG4532|consen 158 NLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDL--QFAV-VFQDGTCAIYDVRN 234 (344)
T ss_pred ccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcc--eEEE-EecCCcEEEEEecc
Confidence 13478899999999888 567888898843 33333222 2222223455555444 4555 66899999988764
Q ss_pred ee------eEEeecccccccEEEEccCCc--EEEEEeCCCCeEEEEEcCCCcEEEEeecCC-----C-CcceEEEEecCC
Q 018248 169 KK------SKYITAHASRIASIAMTLDGR--FVATASSKGTLIRVFNTMDGSLLQEMRRGA-----E-RAEIYSLAFSSN 234 (359)
Q Consensus 169 ~~------~~~~~~~~~~i~~~~~s~~~~--~l~~~~~dg~~i~iwd~~~~~~~~~~~~~~-----~-~~~i~~~~~s~~ 234 (359)
.. ..+-..|.+.+..+.|+|.|. +|...-.-+. +.+.|++++...+.+.... | ...|..-.|+.+
T Consensus 235 ~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~-~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~ 313 (344)
T KOG4532|consen 235 MATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSR-VHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGTNFNNE 313 (344)
T ss_pred cccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcce-EEEEEcccCceeeEEecCccccccccccccccccccCC
Confidence 21 122346899999999998765 4444444455 9999999987555443211 1 134777778777
Q ss_pred CCEEEEEcCCCcEEEEEccCCC
Q 018248 235 AQWLAASSDKGTVHVFGLKVDS 256 (359)
Q Consensus 235 ~~~l~~~~~dg~i~iw~~~~~~ 256 (359)
+..+.+.+++. +.=|++.+..
T Consensus 314 n~s~~v~~e~~-~ae~ni~srs 334 (344)
T KOG4532|consen 314 NESNDVKNELQ-GAEYNILSRS 334 (344)
T ss_pred Ccccccccchh-hheeeccccc
Confidence 77666655543 5667666654
No 283
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.09 E-value=7.3e-10 Score=104.81 Aligned_cols=192 Identities=13% Similarity=0.201 Sum_probs=144.1
Q ss_pred CCCceEEEEEccCCCEEEEec-CCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEEC
Q 018248 5 DPITIHHLALNQDHGCFATGT-ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDD 83 (359)
Q Consensus 5 h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~ 83 (359)
+-..|.++.=+|...+.++|+ ||.+++|....++.+...... | ...+..+.++..++...++. .||.+.+|.+
T Consensus 2207 ~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~-g-~s~vtr~~f~~qGnk~~i~d----~dg~l~l~q~ 2280 (2439)
T KOG1064|consen 2207 PVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTA-G-NSRVTRSRFNHQGNKFGIVD----GDGDLSLWQA 2280 (2439)
T ss_pred ccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeecc-C-cchhhhhhhcccCCceeeec----cCCceeeccc
Confidence 446788888899999999999 999999999877665443332 3 36777778888888887777 6899999996
Q ss_pred CCccEEeeec-cCcceeEEEEecceeEEE----ecCeEEEEEccc-c--eeeeeEeccCCCceeeeeecCCCccEEEecC
Q 018248 84 HENRYLGELS-FRSEVKNVRLRRDRIVVV----LNQKVYVYNFTD-L--KLVDQIETVVNPTGLCDVSQNAGPMVMACPG 155 (359)
Q Consensus 84 ~~~~~~~~~~-~~~~v~~~~~~~~~~~~~----~d~~i~i~d~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g 155 (359)
. .++....+ |.....+++|-.....-+ .++.+.+||..- + ..+. ..|.+.++++++.|... ++++ |
T Consensus 2281 ~-pk~~~s~qchnk~~~Df~Fi~s~~~tag~s~d~~n~~lwDtl~~~~~s~v~--~~H~~gaT~l~~~P~~q--llis-g 2354 (2439)
T KOG1064|consen 2281 S-PKPYTSWQCHNKALSDFRFIGSLLATAGRSSDNRNVCLWDTLLPPMNSLVH--TCHDGGATVLAYAPKHQ--LLIS-G 2354 (2439)
T ss_pred C-CcceeccccCCccccceeeeehhhhccccCCCCCcccchhcccCcccceee--eecCCCceEEEEcCcce--EEEe-c
Confidence 6 55666666 888888888876333333 678999999722 1 2233 67888889999998765 3555 8
Q ss_pred CCCeeEEEEecCCeeeE-EeecccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcEEEEeec
Q 018248 156 LLKGQVRVEDYGTKKSK-YITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRR 219 (359)
Q Consensus 156 ~~d~~v~~~~~~~~~~~-~~~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~~~~~~~ 219 (359)
+.+|.|++|+.+.+.++ .++. +. ...++++|+..|. |+||++.....++.++.
T Consensus 2355 gr~G~v~l~D~rqrql~h~~~~---------~~-~~~~f~~~ss~g~-ikIw~~s~~~ll~~~p~ 2408 (2439)
T KOG1064|consen 2355 GRKGEVCLFDIRQRQLRHTFQA---------LD-TREYFVTGSSEGN-IKIWRLSEFGLLHTFPS 2408 (2439)
T ss_pred CCcCcEEEeehHHHHHHHHhhh---------hh-hhheeeccCcccc-eEEEEccccchhhcCch
Confidence 89999999998765443 2222 33 5668999999999 99999998888877764
No 284
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.08 E-value=3.8e-09 Score=83.66 Aligned_cols=228 Identities=12% Similarity=0.166 Sum_probs=136.3
Q ss_pred CCCCCceEEEEEccCCCEEEEecCCceEEEEcCCCcceee-eecccCC-----CCceeEEEEeccCCEEEEEecCCCCCC
Q 018248 3 QPDPITIHHLALNQDHGCFATGTETGFRVYLSDPYKPIMR-RDFDRNP-----RGGTQLVSMLFRSNIICLVNSGPHQSN 76 (359)
Q Consensus 3 ~~h~~~v~~~~~s~~g~~l~~~~d~~i~iw~~~~~~~~~~-~~~~~~h-----~~~v~~~~~~~~~~~~~~~~~~~~~d~ 76 (359)
+.|+=-|.+++++.|+..++++.|=.|.+|+++-....+. ..++ .| ..-++...|+|....++..+. ..|
T Consensus 161 NaHtyhiNSIS~NsD~Et~lSADdLRINLWnlei~d~sFnIVDIK-P~nmEeLteVITsaEFhp~~cn~f~YSS---SKG 236 (433)
T KOG1354|consen 161 NAHTYHINSISVNSDKETFLSADDLRINLWNLEIIDQSFNIVDIK-PANMEELTEVITSAEFHPHHCNVFVYSS---SKG 236 (433)
T ss_pred ccceeEeeeeeecCccceEeeccceeeeeccccccCCceeEEEcc-ccCHHHHHHHHhhhccCHhHccEEEEec---CCC
Confidence 5688889999999999999999999999999974333221 1221 11 233566677776544444443 469
Q ss_pred eEEEEECCCccEEe----ee------------c-cCcceeEEEEecceeEEE-ec-CeEEEEEc-ccceeeeeEeccCCC
Q 018248 77 KVMIWDDHENRYLG----EL------------S-FRSEVKNVRLRRDRIVVV-LN-QKVYVYNF-TDLKLVDQIETVVNP 136 (359)
Q Consensus 77 ~i~iwd~~~~~~~~----~~------------~-~~~~v~~~~~~~~~~~~~-~d-~~i~i~d~-~~~~~~~~~~~~~~~ 136 (359)
+|++.|++...+-- .+ . .-..|.++.|+++|++++ .| -+|++||+ ...+++.+++.|..-
T Consensus 237 tIrLcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDyltvk~wD~nme~~pv~t~~vh~~l 316 (433)
T KOG1354|consen 237 TIRLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDYLTVKLWDLNMEAKPVETYPVHEYL 316 (433)
T ss_pred cEEEeechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEeccceeEEEeccccCCcceEEeehHhH
Confidence 99999987432110 01 0 124688999999999999 55 79999999 556666666654321
Q ss_pred -------------ceeeeeecCCCccEEEecCCCCeeEEEEecCCeeeEEee--ccccc--ccEEEEccCCcEEEEEeCC
Q 018248 137 -------------TGLCDVSQNAGPMVMACPGLLKGQVRVEDYGTKKSKYIT--AHASR--IASIAMTLDGRFVATASSK 199 (359)
Q Consensus 137 -------------~~~~~~~~~~~~~~l~~~g~~d~~v~~~~~~~~~~~~~~--~~~~~--i~~~~~s~~~~~l~~~~~d 199 (359)
..-...+++|+...+++ |+..+.+++++......+.+. ..... ...+ ..-+.+.+++..
T Consensus 317 r~kLc~lYEnD~IfdKFec~~sg~~~~v~T-Gsy~n~frvf~~~~gsk~d~tl~asr~~~~~~~~---~k~~~V~~~g~r 392 (433)
T KOG1354|consen 317 RSKLCSLYENDAIFDKFECSWSGNDSYVMT-GSYNNVFRVFNLARGSKEDFTLEASRKNMKPRKV---LKLRLVSSSGKR 392 (433)
T ss_pred HHHHHHHhhccchhheeEEEEcCCcceEec-ccccceEEEecCCCCcceeecccccccCCccccc---ccceeeecCCCc
Confidence 11123344555455666 888999999774433333322 22211 1111 111233333333
Q ss_pred CCeEEEEEcCCCcEEEEeecCCCCcceEEEEecCCCCEEEEEcCCCcEEEE
Q 018248 200 GTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSNAQWLAASSDKGTVHVF 250 (359)
Q Consensus 200 g~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw 250 (359)
.. ..++ ...+. ....+...+|+|..+.+|.+..+. ++||
T Consensus 393 ~~-~~~~-------vd~ld---f~kkilh~aWhp~en~ia~aatnn-lyif 431 (433)
T KOG1354|consen 393 KR-DEIS-------VDALD---FRKKILHTAWHPKENSIAVAATNN-LYIF 431 (433)
T ss_pred cc-cccc-------cchhh---hhhHHHhhccCCccceeeeeecCc-eEEe
Confidence 22 2222 11121 234677789999999998887654 6665
No 285
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=99.08 E-value=4.9e-07 Score=70.44 Aligned_cols=226 Identities=11% Similarity=0.118 Sum_probs=129.5
Q ss_pred EEEEccCCCEEEEecCCceEEEEcCCC-cce-eeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEECCCccE
Q 018248 11 HLALNQDHGCFATGTETGFRVYLSDPY-KPI-MRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDDHENRY 88 (359)
Q Consensus 11 ~~~~s~~g~~l~~~~d~~i~iw~~~~~-~~~-~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~ 88 (359)
.++.++||+.||+-.|..|.|-..... ..+ ............-+-++|++++..++++. ..|+|+++|+... .
T Consensus 2 ~~~~~~~Gk~lAi~qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~----S~G~i~vfdl~g~-~ 76 (282)
T PF15492_consen 2 HLALSSDGKLLAILQDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAE----STGTIRVFDLMGS-E 76 (282)
T ss_pred ceeecCCCcEEEEEeccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEc----CCCeEEEEecccc-e
Confidence 467889999999999999998876532 111 12222211223356789999999999888 5699999997653 3
Q ss_pred Eeeec--------cCcceeEEEEecce-------eEEE--ecCeEEEEEcc-----cceeeeeEec---cCCCceeeeee
Q 018248 89 LGELS--------FRSEVKNVRLRRDR-------IVVV--LNQKVYVYNFT-----DLKLVDQIET---VVNPTGLCDVS 143 (359)
Q Consensus 89 ~~~~~--------~~~~v~~~~~~~~~-------~~~~--~d~~i~i~d~~-----~~~~~~~~~~---~~~~~~~~~~~ 143 (359)
+..+. ....|..+.|.+.. .+++ ..|.++-|-+. ..+..+.+.. ....+..+.++
T Consensus 77 lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~ 156 (282)
T PF15492_consen 77 LFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYH 156 (282)
T ss_pred eEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEc
Confidence 33332 23566777775432 3344 77777777652 2234444433 34567777777
Q ss_pred cCCCccEEEecCCCCeeEEEEecCCeeeEEeecccccccEEEEc---cCCcEEEEEeCCCC-----eEEEEEcCCCcEEE
Q 018248 144 QNAGPMVMACPGLLKGQVRVEDYGTKKSKYITAHASRIASIAMT---LDGRFVATASSKGT-----LIRVFNTMDGSLLQ 215 (359)
Q Consensus 144 ~~~~~~~l~~~g~~d~~v~~~~~~~~~~~~~~~~~~~i~~~~~s---~~~~~l~~~~~dg~-----~i~iwd~~~~~~~~ 215 (359)
|...- |..+|.....-... ++....+++=.+- |..+. ++...|+. .-.+|.+-+.+...
T Consensus 157 p~h~L--LlVgG~~~~~~~~s----------~a~~~GLtaWRiL~~~Pyyk~-v~~~~~~~~~~~~~~~~~~~~~~~~fs 223 (282)
T PF15492_consen 157 PKHRL--LLVGGCEQNQDGMS----------KASSCGLTAWRILSDSPYYKQ-VTSSEDDITASSKRRGLLRIPSFKFFS 223 (282)
T ss_pred CCCCE--EEEeccCCCCCccc----------cccccCceEEEEcCCCCcEEE-ccccCccccccccccceeeccceeeee
Confidence 76543 44445544321111 1112222222221 22211 12222221 02344433322221
Q ss_pred EeecCCCCcceEEEEecCCCCEEEEEcCCCcEEEEEccCCC
Q 018248 216 EMRRGAERAEIYSLAFSSNAQWLAASSDKGTVHVFGLKVDS 256 (359)
Q Consensus 216 ~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~ 256 (359)
.. ......|..|..||||+.||+...+|.|.+|++.+-.
T Consensus 224 ~~--~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~ 262 (282)
T PF15492_consen 224 RQ--GQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLR 262 (282)
T ss_pred cc--ccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcch
Confidence 11 1245689999999999999999999999999998765
No 286
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=99.02 E-value=4.3e-07 Score=83.77 Aligned_cols=238 Identities=15% Similarity=0.113 Sum_probs=143.6
Q ss_pred CCCceEEEEEccCCCEEEEec-CCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEEC
Q 018248 5 DPITIHHLALNQDHGCFATGT-ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDD 83 (359)
Q Consensus 5 h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~ 83 (359)
-...|.++.|..+...+..+. .|.|.+-|.++......... ..+|.+++|+++...++++++ .+++.+-.
T Consensus 67 gd~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~eivg~v----d~GI~aaswS~Dee~l~liT~----~~tll~mT- 137 (1265)
T KOG1920|consen 67 GDDEIVSVQFLADTNSICVITALGDIILVDPETLELEIVGNV----DNGISAASWSPDEELLALITG----RQTLLFMT- 137 (1265)
T ss_pred CCcceEEEEEecccceEEEEecCCcEEEEcccccceeeeeec----cCceEEEeecCCCcEEEEEeC----CcEEEEEe-
Confidence 346899999999999888888 99999998887665555554 689999999999999999994 45665544
Q ss_pred CCccEEeeec------cCcceeEEEEecceeEEE-ecCeEEEEEccc-ceeeeeEeccCCCceeeeeecCCCccEEEec-
Q 018248 84 HENRYLGELS------FRSEVKNVRLRRDRIVVV-LNQKVYVYNFTD-LKLVDQIETVVNPTGLCDVSQNAGPMVMACP- 154 (359)
Q Consensus 84 ~~~~~~~~~~------~~~~v~~~~~~~~~~~~~-~d~~i~i~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~- 154 (359)
.+-.++.... ..+..-.+-|-.....+- ..|....-+... .+.......+.+ -..+.|..+++. +|++
T Consensus 138 ~~f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~-~~~IsWRgDg~~--fAVs~ 214 (1265)
T KOG1920|consen 138 KDFEPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDH-KTSISWRGDGEY--FAVSF 214 (1265)
T ss_pred ccccchhccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccC-CceEEEccCCcE--EEEEE
Confidence 3333333222 112233344433222221 222222222110 011111111222 234666666654 4431
Q ss_pred ---CCCCeeEEEEecCCeeeEEeecccccccEEEEccCCcEEEEEe---CCCCeEEEEEcCCCcEEEEeec--CCCCcce
Q 018248 155 ---GLLKGQVRVEDYGTKKSKYITAHASRIASIAMTLDGRFVATAS---SKGTLIRVFNTMDGSLLQEMRR--GAERAEI 226 (359)
Q Consensus 155 ---g~~d~~v~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~---~dg~~i~iwd~~~~~~~~~~~~--~~~~~~i 226 (359)
......+++|+..+..-..-....+.-.+++|-|.|.++++-. .|+. |.+|. ++|-.-.+|.. .....++
T Consensus 215 ~~~~~~~RkirV~drEg~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~-IvffE-rNGL~hg~f~l~~p~de~~v 292 (1265)
T KOG1920|consen 215 VESETGTRKIRVYDREGALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSD-IVFFE-RNGLRHGEFVLPFPLDEKEV 292 (1265)
T ss_pred EeccCCceeEEEecccchhhcccCcccccccceeecCCCCeEeeeeecCCCCc-EEEEe-cCCccccccccCCcccccch
Confidence 2222789999988543333233344557899999999998764 4556 88887 45543333221 2234458
Q ss_pred EEEEecCCCCEEEE---EcCCCcEEEEEccCCC
Q 018248 227 YSLAFSSNAQWLAA---SSDKGTVHVFGLKVDS 256 (359)
Q Consensus 227 ~~~~~s~~~~~l~~---~~~dg~i~iw~~~~~~ 256 (359)
..++|+.++..|++ ......|++|-+.+-.
T Consensus 293 e~L~Wns~sdiLAv~~~~~e~~~v~lwt~~Nyh 325 (1265)
T KOG1920|consen 293 EELAWNSNSDILAVVTSNLENSLVQLWTTGNYH 325 (1265)
T ss_pred heeeecCCCCceeeeecccccceEEEEEecCeE
Confidence 99999999999987 4444559999988754
No 287
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=99.01 E-value=1.5e-06 Score=67.74 Aligned_cols=221 Identities=13% Similarity=0.089 Sum_probs=128.8
Q ss_pred EEEecceeEEE--ecCeEEEEEcccc--eeeeeEecc---CCCceeeeeecCCCccEEEecCCCCeeEEEEecCCeeeEE
Q 018248 101 VRLRRDRIVVV--LNQKVYVYNFTDL--KLVDQIETV---VNPTGLCDVSQNAGPMVMACPGLLKGQVRVEDYGTKKSKY 173 (359)
Q Consensus 101 ~~~~~~~~~~~--~d~~i~i~d~~~~--~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~~g~~d~~v~~~~~~~~~~~~ 173 (359)
++.+++|++++ .|..|.|=..++. ..+.+...+ ...-.-++|+||+.. ||+ ....|+|++++..+..+..
T Consensus 3 ~~~~~~Gk~lAi~qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tl--La~-a~S~G~i~vfdl~g~~lf~ 79 (282)
T PF15492_consen 3 LALSSDGKLLAILQDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTL--LAY-AESTGTIRVFDLMGSELFV 79 (282)
T ss_pred eeecCCCcEEEEEeccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcE--EEE-EcCCCeEEEEecccceeEE
Confidence 56678888888 8888877665432 222222222 223356899988865 555 3458999998888766665
Q ss_pred eecc-------cccccEEEEccCC------cEEEEEeCCCCeEEEEEcCC-----CcEEEEeecCC-CCcceEEEEecCC
Q 018248 174 ITAH-------ASRIASIAMTLDG------RFVATASSKGTLIRVFNTMD-----GSLLQEMRRGA-ERAEIYSLAFSSN 234 (359)
Q Consensus 174 ~~~~-------~~~i~~~~~s~~~------~~l~~~~~dg~~i~iwd~~~-----~~~~~~~~~~~-~~~~i~~~~~s~~ 234 (359)
+... ...|..+.|-+.. ..|++-..+|. ++=|-+.. .+....+.... .+..|.++.++|.
T Consensus 80 I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~-L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~ 158 (282)
T PF15492_consen 80 IPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQ-LRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPK 158 (282)
T ss_pred cCcccccCCccccceeeeEeeccccccccceeEEEEeccce-eeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCC
Confidence 5432 2356666665421 24666677777 77776532 23333333221 4678999999999
Q ss_pred CCEEEEEcCCC-----------cEEEEEccCCCCCCCCCccccCCCCCccCCCCCceeeeeEeeeecceEEecccceeEE
Q 018248 235 AQWLAASSDKG-----------TVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSAISSFRFIRGVLPKYFSSKWSMAQF 303 (359)
Q Consensus 235 ~~~l~~~~~dg-----------~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (359)
.++|+.|+... -+.-|.+-++.+-... +. .... .. ........+.+....+.+.. .
T Consensus 159 h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~--v~--~~~~-~~--~~~~~~~~~~~~~~~~~fs~------~ 225 (282)
T PF15492_consen 159 HRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQ--VT--SSED-DI--TASSKRRGLLRIPSFKFFSR------Q 225 (282)
T ss_pred CCEEEEeccCCCCCccccccccCceEEEEcCCCCcEEE--cc--ccCc-cc--cccccccceeeccceeeeec------c
Confidence 99888776321 2666777665532110 00 0000 00 00001111111110011111 1
Q ss_pred eecCCcEEEeeecccCCEEEEEecCCeEEEEEeCC
Q 018248 304 RLPENVQYLVGFGRQNNTIVIVGLDGSYYKCEFDP 338 (359)
Q Consensus 304 ~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~ 338 (359)
.-..+.|..+..||||..|++..-+|.|.+|.++.
T Consensus 226 ~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPs 260 (282)
T PF15492_consen 226 GQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPS 260 (282)
T ss_pred ccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCc
Confidence 11236789999999999999999999999999986
No 288
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=99.01 E-value=4.6e-08 Score=85.77 Aligned_cols=242 Identities=14% Similarity=0.060 Sum_probs=165.2
Q ss_pred CCCCceEEEEEccCCCEEEEecCCceEEEEcCCCcceeeeecccCCCCceeEEEEeccC----------CEEEEEecCCC
Q 018248 4 PDPITIHHLALNQDHGCFATGTETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRS----------NIICLVNSGPH 73 (359)
Q Consensus 4 ~h~~~v~~~~~s~~g~~l~~~~d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~----------~~~~~~~~~~~ 73 (359)
+|.+.-.++.|+|.| +||.|+...|.+.|..+.+.+...+ -|...|..+.|.|-+ ..+.++++.
T Consensus 13 l~~sN~~A~Dw~~~G-LiAygshslV~VVDs~s~q~iqsie---~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD-- 86 (1062)
T KOG1912|consen 13 LSRSNRNAADWSPSG-LIAYGSHSLVSVVDSRSLQLIQSIE---LHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASAD-- 86 (1062)
T ss_pred CCcccccccccCccc-eEEEecCceEEEEehhhhhhhhccc---cCccceeEEEeccCCCchhccCccccceeEEecc--
Confidence 345557788999887 8899998889999988766664444 578999999998643 233444444
Q ss_pred CCCeEEEEECCCccEEeeec-cCcceeEEEEecc---e-eEEE---ecCeEEEEEcccceeeeeEeccCCCceeeeeecC
Q 018248 74 QSNKVMIWDDHENRYLGELS-FRSEVKNVRLRRD---R-IVVV---LNQKVYVYNFTDLKLVDQIETVVNPTGLCDVSQN 145 (359)
Q Consensus 74 ~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~---~-~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (359)
..|.|.+||...+..+..+. +..++.+++|-+. . .+++ ....+.+|+..+|+.............++.+.|-
T Consensus 87 ~~GrIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPf 166 (1062)
T KOG1912|consen 87 ISGRIILVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPF 166 (1062)
T ss_pred ccCcEEEEEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCC
Confidence 46999999999999888888 6788999998663 3 2232 7889999999999998887766666666777775
Q ss_pred CCccEEEecCCCCeeEEE-EecC-------CeeeEEeecccc-------------------------cccEEEEccCCcE
Q 018248 146 AGPMVMACPGLLKGQVRV-EDYG-------TKKSKYITAHAS-------------------------RIASIAMTLDGRF 192 (359)
Q Consensus 146 ~~~~~l~~~g~~d~~v~~-~~~~-------~~~~~~~~~~~~-------------------------~i~~~~~s~~~~~ 192 (359)
....+.+. |+ .|.+.+ .+.. ++..+....|.. ....++|+|.-+-
T Consensus 167 d~rh~~~l-~s-~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn 244 (1062)
T KOG1912|consen 167 DSRHFCVL-GS-KGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRN 244 (1062)
T ss_pred CcceEEEE-cc-CceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhc
Confidence 44433333 43 555555 3222 122222222211 0123467887665
Q ss_pred EEEEeCCCCeEEEEEcCCCcEEEEeecCCCCcceEEEEecCCC--CEEEEEcCCCcEEEEEccCCC
Q 018248 193 VATASSKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSNA--QWLAASSDKGTVHVFGLKVDS 256 (359)
Q Consensus 193 l~~~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~--~~l~~~~~dg~i~iw~~~~~~ 256 (359)
++-...... +.++|++-..++....- ..+.+.-+.+-|++ ..|++.-.||.+.||-.+...
T Consensus 245 ~lfi~~pre-llv~dle~~~~l~vvpi--er~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~~~ 307 (1062)
T KOG1912|consen 245 ILFITFPRE-LLVFDLEYECCLAVVPI--ERGGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKEEP 307 (1062)
T ss_pred eEEEEeccc-eEEEcchhhceeEEEEe--ccCCcceeEeccCCCcceEEEEecCCeEEEEEeeccC
Confidence 555555666 99999988888877765 33455556666665 478899999999999887643
No 289
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=99.00 E-value=1.1e-06 Score=70.70 Aligned_cols=215 Identities=15% Similarity=0.145 Sum_probs=130.9
Q ss_pred CCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEECCCccEEeeeccCcceeEEEEec
Q 018248 26 ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDDHENRYLGELSFRSEVKNVRLRR 105 (359)
Q Consensus 26 d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~ 105 (359)
++.|..||..+++......+..+....+ ......++.+++.+ .++.|..||..+|+.+..+..+..+.......
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~--~~~~~~~~~v~~~~----~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~ 75 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPGIGGPV--ATAVPDGGRVYVAS----GDGNLYALDAKTGKVLWRFDLPGPISGAPVVD 75 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSSCSSEE--ETEEEETTEEEEEE----TTSEEEEEETTTSEEEEEEECSSCGGSGEEEE
T ss_pred CCEEEEEECCCCCEEEEEECCCCCCCcc--ceEEEeCCEEEEEc----CCCEEEEEECCCCCEEEEeeccccccceeeec
Confidence 5788999998888888777631112211 11223456666665 57999999999999998887554443333334
Q ss_pred ceeEEE--ecCeEEEEEcccceeeeeE-eccCCC---ceeeeeecCCCccEEEecCCCCeeEEEEe-cCCeeeEEeeccc
Q 018248 106 DRIVVV--LNQKVYVYNFTDLKLVDQI-ETVVNP---TGLCDVSQNAGPMVMACPGLLKGQVRVED-YGTKKSKYITAHA 178 (359)
Q Consensus 106 ~~~~~~--~d~~i~i~d~~~~~~~~~~-~~~~~~---~~~~~~~~~~~~~~l~~~g~~d~~v~~~~-~~~~~~~~~~~~~ 178 (359)
++.+++ .++.++.+|..+|+.+... ...... .........++.+++.. .++.+...+ .+++.+-......
T Consensus 76 ~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~g~l~~~d~~tG~~~w~~~~~~ 152 (238)
T PF13360_consen 76 GGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGT---SSGKLVALDPKTGKLLWKYPVGE 152 (238)
T ss_dssp TTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEE---TCSEEEEEETTTTEEEEEEESST
T ss_pred ccccccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEe---ccCcEEEEecCCCcEEEEeecCC
Confidence 444444 6889999999999998884 332111 12223333455433332 367777755 5666666555433
Q ss_pred ccc----------cEEEEccCCcEEEEEeCCCCeEEEEEcCCCcEEEEeecCCCCcceEEEEecCCCCEEEEEcCCCcEE
Q 018248 179 SRI----------ASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSNAQWLAASSDKGTVH 248 (359)
Q Consensus 179 ~~i----------~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~ 248 (359)
... ..-....++ .+..++.++. +..+|+.+++.+..... ..+..+ ...++..|+.++.++.|.
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~-~~~~d~~tg~~~w~~~~----~~~~~~-~~~~~~~l~~~~~~~~l~ 225 (238)
T PF13360_consen 153 PRGSSPISSFSDINGSPVISDG-RVYVSSGDGR-VVAVDLATGEKLWSKPI----SGIYSL-PSVDGGTLYVTSSDGRLY 225 (238)
T ss_dssp T-SS--EEEETTEEEEEECCTT-EEEEECCTSS-EEEEETTTTEEEEEECS----S-ECEC-EECCCTEEEEEETTTEEE
T ss_pred CCCCcceeeecccccceEEECC-EEEEEcCCCe-EEEEECCCCCEEEEecC----CCccCC-ceeeCCEEEEEeCCCEEE
Confidence 221 122222344 6777777776 44449999996643321 222221 345677888777999999
Q ss_pred EEEccCCC
Q 018248 249 VFGLKVDS 256 (359)
Q Consensus 249 iw~~~~~~ 256 (359)
.||+++++
T Consensus 226 ~~d~~tG~ 233 (238)
T PF13360_consen 226 ALDLKTGK 233 (238)
T ss_dssp EEETTTTE
T ss_pred EEECCCCC
Confidence 99999986
No 290
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.99 E-value=5.6e-06 Score=66.87 Aligned_cols=212 Identities=14% Similarity=0.094 Sum_probs=132.8
Q ss_pred EEEEcc-CCCEEEEec-CCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEECCCccE
Q 018248 11 HLALNQ-DHGCFATGT-ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDDHENRY 88 (359)
Q Consensus 11 ~~~~s~-~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~ 88 (359)
++.|.+ ++.++.+.. .+.|..|+.+++.... ..+ .. ...+.+....+.++++. .+.+.++|+.+++.
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~----~~-~~G~~~~~~~g~l~v~~-----~~~~~~~d~~~g~~ 72 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-IDL----PG-PNGMAFDRPDGRLYVAD-----SGGIAVVDPDTGKV 72 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-EES----SS-EEEEEEECTTSEEEEEE-----TTCEEEEETTTTEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-Eec----CC-CceEEEEccCCEEEEEE-----cCceEEEecCCCcE
Confidence 578998 666666666 8889999998754432 232 22 44455553334444444 25566669888855
Q ss_pred Eeeec------cCcceeEEEEecceeEEE-e--------c--CeEEEEEcccceeeeeEeccCCCceeeeeecCCCccEE
Q 018248 89 LGELS------FRSEVKNVRLRRDRIVVV-L--------N--QKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAGPMVM 151 (359)
Q Consensus 89 ~~~~~------~~~~v~~~~~~~~~~~~~-~--------d--~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 151 (359)
..... .....+++++.|+|.+.+ . . +.|..++.. ++...... .-...+-++|+|+++.+++
T Consensus 73 ~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~-~~~~pNGi~~s~dg~~lyv 150 (246)
T PF08450_consen 73 TVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVAD-GLGFPNGIAFSPDGKTLYV 150 (246)
T ss_dssp EEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEE-EESSEEEEEEETTSSEEEE
T ss_pred EEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEec-CcccccceEECCcchheee
Confidence 44333 235678999999998776 1 1 567888875 55433333 2344567999999987655
Q ss_pred EecCCCCeeEEEEecC--Ce---eeEEe---ecccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcEEEEeecCCCC
Q 018248 152 ACPGLLKGQVRVEDYG--TK---KSKYI---TAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRRGAER 223 (359)
Q Consensus 152 ~~~g~~d~~v~~~~~~--~~---~~~~~---~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~~~~~~~~~~~ 223 (359)
+- +..+.|..++.+ +. ..+.+ ....+..-.+++..+|++.++....+. |.++|.. |+.+..+... .
T Consensus 151 ~d--s~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~-I~~~~p~-G~~~~~i~~p--~ 224 (246)
T PF08450_consen 151 AD--SFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGR-IVVFDPD-GKLLREIELP--V 224 (246)
T ss_dssp EE--TTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTE-EEEEETT-SCEEEEEE-S--S
T ss_pred cc--cccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCE-EEEECCC-ccEEEEEcCC--C
Confidence 54 345566664442 32 11222 222224778999999998777777787 9999965 9988888764 2
Q ss_pred cceEEEEec-CCCCEEEEE
Q 018248 224 AEIYSLAFS-SNAQWLAAS 241 (359)
Q Consensus 224 ~~i~~~~~s-~~~~~l~~~ 241 (359)
..+++++|. ++.+.|+..
T Consensus 225 ~~~t~~~fgg~~~~~L~vT 243 (246)
T PF08450_consen 225 PRPTNCAFGGPDGKTLYVT 243 (246)
T ss_dssp SSEEEEEEESTTSSEEEEE
T ss_pred CCEEEEEEECCCCCEEEEE
Confidence 489999994 676655543
No 291
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.97 E-value=4.3e-07 Score=69.91 Aligned_cols=195 Identities=9% Similarity=0.037 Sum_probs=118.6
Q ss_pred ecCeEEEEEccccee-eeeEeccCCCceeeeeecCCCccEEEecCCCCeeEEEEecCCeeeEEeecccc--cccEEEEcc
Q 018248 112 LNQKVYVYNFTDLKL-VDQIETVVNPTGLCDVSQNAGPMVMACPGLLKGQVRVEDYGTKKSKYITAHAS--RIASIAMTL 188 (359)
Q Consensus 112 ~d~~i~i~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~v~~~~~~~~~~~~~~~~~~--~i~~~~~s~ 188 (359)
.-|...+|...+.+- ++....+...+..+.-..+....++.+ +.|.++++...++...+.. .|.. .+.++++++
T Consensus 92 ~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~--sndht~k~~~~~~~s~~~~-~h~~~~~~ns~~~sn 168 (344)
T KOG4532|consen 92 ASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIA--SNDHTGKTMVVSGDSNKFA-VHNQNLTQNSLHYSN 168 (344)
T ss_pred ccceeeeecccCcccceeeecccccchhhhhhhcccccceeec--cCCcceeEEEEecCcccce-eeccccceeeeEEcC
Confidence 567888888765433 222333444444332222333333433 3677777755555433322 2322 378999999
Q ss_pred CCcEEEEEeCCCCeEEEEEcCCC-cEEEEeecCCCCcceEEEEecCCCCEEEEEcCCCcEEEEEccCCCCCCCCCccccC
Q 018248 189 DGRFVATASSKGTLIRVFNTMDG-SLLQEMRRGAERAEIYSLAFSSNAQWLAASSDKGTVHVFGLKVDSGSPGTSKLHSA 267 (359)
Q Consensus 189 ~~~~l~~~~~dg~~i~iwd~~~~-~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~ 267 (359)
|++++++.+.... |..|.+... +.+...........-.+..|+.....+|++..||++.|||++.....-
T Consensus 169 d~~~~~~Vgds~~-Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm-------- 239 (344)
T KOG4532|consen 169 DPSWGSSVGDSRR-VFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPM-------- 239 (344)
T ss_pred CCceEEEecCCCc-ceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecCCcEEEEEecccccch--------
Confidence 9999999999888 999988653 332222222133445688899999999999999999999999865210
Q ss_pred CCCCccCCCCCceeeeeEeeeecceEEecccceeEEeecCCcEEEeeecccC--CEEEEEecCCeEEEEEeCCCCCCceE
Q 018248 268 SEPNLSSKNSSAISSFRFIRGVLPKYFSSKWSMAQFRLPENVQYLVGFGRQN--NTIVIVGLDGSYYKCEFDPMKGGEMH 345 (359)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~--~~l~~~~~dg~i~v~~~~~~~~~~~~ 345 (359)
...... -..|.|.+..+.|++-| ..|+..-.=+.+++.++..-..-+.+
T Consensus 240 ------------------------~~~sst-----rp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I 290 (344)
T KOG4532|consen 240 ------------------------AEISST-----RPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVI 290 (344)
T ss_pred ------------------------hhhccc-----CCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEE
Confidence 000001 11256889999999855 44555555677777766654333333
Q ss_pred Ee
Q 018248 346 QL 347 (359)
Q Consensus 346 ~~ 347 (359)
++
T Consensus 291 ~i 292 (344)
T KOG4532|consen 291 VI 292 (344)
T ss_pred ec
Confidence 33
No 292
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.96 E-value=1.6e-08 Score=82.95 Aligned_cols=243 Identities=12% Similarity=0.094 Sum_probs=164.7
Q ss_pred CCCceEEEEEccCCCEEEEec-CCceEEEEcCC-CcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEE
Q 018248 5 DPITIHHLALNQDHGCFATGT-ETGFRVYLSDP-YKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWD 82 (359)
Q Consensus 5 h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~-~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd 82 (359)
|.+.|+.+.-+ -.+++.+++ ||.++.|.-.. ....+...+. .|...+..++.+.++-....++. .|..++++|
T Consensus 8 hrd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~isGvEfVKhFr-aHL~~I~sl~~S~dg~L~~Sv~d---~Dhs~KvfD 82 (558)
T KOG0882|consen 8 HRDVITHVFPT-KAKFIIQASLDGHKKFWKKSRISGVEFVKHFR-AHLGVILSLAVSYDGWLFRSVED---PDHSVKVFD 82 (558)
T ss_pred ccceeeeEeee-hhheEEeeecchhhhhcCCCCccceeehhhhH-HHHHHHHhhhccccceeEeeccC---cccceeEEE
Confidence 66777777544 456889999 99999998764 2233334444 67777888887777665555442 389999999
Q ss_pred CCCccEEeeec---cCcceeEEEEecce--eEEE----ecCeEEEEEcccc--eeeeeEeccCCCceeeeeecCCCccEE
Q 018248 83 DHENRYLGELS---FRSEVKNVRLRRDR--IVVV----LNQKVYVYNFTDL--KLVDQIETVVNPTGLCDVSQNAGPMVM 151 (359)
Q Consensus 83 ~~~~~~~~~~~---~~~~v~~~~~~~~~--~~~~----~d~~i~i~d~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l 151 (359)
+++-..+.-++ .++.+..+ .++.. ..++ .++.+.++|-... +....-..|..++..+.+.+.++. .
T Consensus 83 vEn~DminmiKL~~lPg~a~wv-~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds--~ 159 (558)
T KOG0882|consen 83 VENFDMINMIKLVDLPGFAEWV-TSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDS--A 159 (558)
T ss_pred eeccchhhhcccccCCCceEEe-cCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccc--e
Confidence 88766554444 22322222 22221 1222 7899999997432 233333568889999999998885 3
Q ss_pred EecCCCCeeEEEEecCCe---e-------------eEEeecccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcEEE
Q 018248 152 ACPGLLKGQVRVEDYGTK---K-------------SKYITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQ 215 (359)
Q Consensus 152 ~~~g~~d~~v~~~~~~~~---~-------------~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~~~ 215 (359)
.+ ....|.|.-|...+. + +..+...+....++.|+|+|..+.+-+.|.. |++++.++|+.++
T Consensus 160 vS-iD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~Drk-VR~F~~KtGklvq 237 (558)
T KOG0882|consen 160 VS-IDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRK-VRGFVFKTGKLVQ 237 (558)
T ss_pred ee-ccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccE-EEEEEeccchhhh
Confidence 33 556788998988751 0 1112233557789999999999999999999 9999999987665
Q ss_pred EeecC-------------------------------CCCcceEEEEecCCCCEEEEEcCCCcEEEEEccCCCCC
Q 018248 216 EMRRG-------------------------------AERAEIYSLAFSSNAQWLAASSDKGTVHVFGLKVDSGS 258 (359)
Q Consensus 216 ~~~~~-------------------------------~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~ 258 (359)
.+... .....-+.+.|...|++|+.++-=| |+|.++.+.+..
T Consensus 238 eiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~g-ikvin~~tn~v~ 310 (558)
T KOG0882|consen 238 EIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILG-IKVINLDTNTVV 310 (558)
T ss_pred hhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeeccee-EEEEEeecCeEE
Confidence 43310 0112345677888899999998777 999999987743
No 293
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.95 E-value=1.2e-08 Score=88.91 Aligned_cols=289 Identities=10% Similarity=0.087 Sum_probs=182.4
Q ss_pred CCceEEEEEccCCCEEEEecCCceEEEEcCCC-cce-eeeecccCCCCceeEEEEeccCCE-EEEEecCCCCCCeEEEEE
Q 018248 6 PITIHHLALNQDHGCFATGTETGFRVYLSDPY-KPI-MRRDFDRNPRGGTQLVSMLFRSNI-ICLVNSGPHQSNKVMIWD 82 (359)
Q Consensus 6 ~~~v~~~~~s~~g~~l~~~~d~~i~iw~~~~~-~~~-~~~~~~~~h~~~v~~~~~~~~~~~-~~~~~~~~~~d~~i~iwd 82 (359)
..++.++..+|.|+-+|.++.-.+.+-|++.. ... +...+. .-.+..+.|++.+.. ..+++. ....-.+|+
T Consensus 24 ~~~~~a~si~p~grdi~lAsr~gl~i~dld~p~~ppr~l~h~t---pw~vad~qws~h~a~~~wiVst---s~qkaiiwn 97 (1081)
T KOG0309|consen 24 DGGFNAVSINPSGRDIVLASRQGLYIIDLDDPFTPPRWLHHIT---PWQVADVQWSPHPAKPYWIVST---SNQKAIIWN 97 (1081)
T ss_pred cCcccceeeccccchhhhhhhcCeEEEeccCCCCCceeeeccC---cchhcceecccCCCCceeEEec---Ccchhhhhh
Confidence 45678899999999999999777788888633 222 222221 233555677766533 223333 347778888
Q ss_pred CCC--ccEEeeec--cCcceeEEEEecceeEEE----ecCeEEEEEcccc-eeeeeEeccCCCceeeeeecCCCccEEEe
Q 018248 83 DHE--NRYLGELS--FRSEVKNVRLRRDRIVVV----LNQKVYVYNFTDL-KLVDQIETVVNPTGLCDVSQNAGPMVMAC 153 (359)
Q Consensus 83 ~~~--~~~~~~~~--~~~~v~~~~~~~~~~~~~----~d~~i~i~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 153 (359)
+.. .+.+.-+. |...|+++.|+|+..-+. .|-.+..||+++. .++..+.........++|+..... ++|+
T Consensus 98 lA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~-vlas 176 (1081)
T KOG0309|consen 98 LAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPN-VLAS 176 (1081)
T ss_pred hhcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcc-hhhh
Confidence 653 33443333 888999999999876554 8899999999765 344555555555667888776554 3443
Q ss_pred cCCCCeeEEEEecCC--eeeEEeecccccccEEEEccC-CcEEEEEeCCCCeEEEEEcCCCc--EEEEeecCCCCcceEE
Q 018248 154 PGLLKGQVRVEDYGT--KKSKYITAHASRIASIAMTLD-GRFVATASSKGTLIRVFNTMDGS--LLQEMRRGAERAEIYS 228 (359)
Q Consensus 154 ~g~~d~~v~~~~~~~--~~~~~~~~~~~~i~~~~~s~~-~~~l~~~~~dg~~i~iwd~~~~~--~~~~~~~~~~~~~i~~ 228 (359)
+..+.|.+|+.+. .++..+++|...|+.+.|..- -..+.+++.|++ |+.||..... ..+... ...+|..
T Consensus 177 --shg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~t-vkfw~y~kSt~e~~~~vt---t~~piw~ 250 (1081)
T KOG0309|consen 177 --SHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGT-VKFWDYSKSTTESKRTVT---TNFPIWR 250 (1081)
T ss_pred --ccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCc-eeeecccccccccceecc---ccCccee
Confidence 3566788888764 678888899999999998753 336789999999 9999976543 233333 3457777
Q ss_pred EEecCCCC--EEEEEcCCCcEEEEEccCCCCCCCCCccccCCCCCccCCCCCceeeeeEeeeecceEEecccceeEEeec
Q 018248 229 LAFSSNAQ--WLAASSDKGTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSAISSFRFIRGVLPKYFSSKWSMAQFRLP 306 (359)
Q Consensus 229 ~~~s~~~~--~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (359)
-.+-|-|. ++.---.+..+.+++.+....+. ..++..+++.+|..|
T Consensus 251 ~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~--------------------------------n~~~~~~pVh~F~GH 298 (1081)
T KOG0309|consen 251 GRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEW--------------------------------NVFDLNTPVHTFVGH 298 (1081)
T ss_pred ccccccCceeEeccccCCeeeeeccccchhhhh--------------------------------ccccCCcceeeecCc
Confidence 77877544 33222223355555555432110 112223344445555
Q ss_pred CCcEEEeeecc--------c--CCEEEEEecCCeEEEEEeCCC
Q 018248 307 ENVQYLVGFGR--------Q--NNTIVIVGLDGSYYKCEFDPM 339 (359)
Q Consensus 307 ~~~v~~~~~s~--------~--~~~l~~~~~dg~i~v~~~~~~ 339 (359)
.+.|...-|-. | .-+|++=+.|-.+++|.++.+
T Consensus 299 ~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~~~ 341 (1081)
T KOG0309|consen 299 DDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPIDSQ 341 (1081)
T ss_pred chHHHHHhhhhcccccCCCCccceeEEEeecCCceEeeeccHH
Confidence 54443333321 1 246899999999999998764
No 294
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.95 E-value=4.2e-06 Score=67.27 Aligned_cols=211 Identities=18% Similarity=0.191 Sum_probs=129.5
Q ss_pred CCeEEEEECCCccEEeeeccCcceeEE---EEecceeEEE--ecCeEEEEEcccceeeeeEeccCCCceeeeeecCCCcc
Q 018248 75 SNKVMIWDDHENRYLGELSFRSEVKNV---RLRRDRIVVV--LNQKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAGPM 149 (359)
Q Consensus 75 d~~i~iwd~~~~~~~~~~~~~~~v~~~---~~~~~~~~~~--~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (359)
++.|..+|..+|+.+............ ....++.+++ .++.|+.||..+|+.+..... ...+.... ...++.+
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~-~~~~~~~~-~~~~~~v 79 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPGIGGPVATAVPDGGRVYVASGDGNLYALDAKTGKVLWRFDL-PGPISGAP-VVDGGRV 79 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSSCSSEEETEEEETTEEEEEETTSEEEEEETTTSEEEEEEEC-SSCGGSGE-EEETTEE
T ss_pred CCEEEEEECCCCCEEEEEECCCCCCCccceEEEeCCEEEEEcCCCEEEEEECCCCCEEEEeec-ccccccee-eeccccc
Confidence 689999999999999988743222222 3334555555 899999999999999988876 33332222 3344444
Q ss_pred EEEecCCCCeeEEEEe-cCCeeeEEe-eccc---ccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcEEEEeecCCCCc
Q 018248 150 VMACPGLLKGQVRVED-YGTKKSKYI-TAHA---SRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRRGAERA 224 (359)
Q Consensus 150 ~l~~~g~~d~~v~~~~-~~~~~~~~~-~~~~---~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~~~~~~~~~~~~ 224 (359)
++++ .++.++.++ .+++.+... .... ..........++..++.+..++. |..+|.++|+.+..........
T Consensus 80 ~v~~---~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-l~~~d~~tG~~~w~~~~~~~~~ 155 (238)
T PF13360_consen 80 YVGT---SDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGK-LVALDPKTGKLLWKYPVGEPRG 155 (238)
T ss_dssp EEEE---TTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSE-EEEEETTTTEEEEEEESSTT-S
T ss_pred cccc---ceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCc-EEEEecCCCcEEEEeecCCCCC
Confidence 4443 466777755 666666653 3221 11122333334778888888888 9999999999988876532111
Q ss_pred --c------e-EEEEecCCCCEEEEEcCCCcEEEEEccCCCCCCCCCccccCCCCCccCCCCCceeeeeEeeeecceEEe
Q 018248 225 --E------I-YSLAFSSNAQWLAASSDKGTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSAISSFRFIRGVLPKYFS 295 (359)
Q Consensus 225 --~------i-~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (359)
. + ..+.+. ++ .+..++.++.+.-+|+.+++.. |.
T Consensus 156 ~~~~~~~~~~~~~~~~~-~~-~v~~~~~~g~~~~~d~~tg~~~-----------------------------------w~ 198 (238)
T PF13360_consen 156 SSPISSFSDINGSPVIS-DG-RVYVSSGDGRVVAVDLATGEKL-----------------------------------WS 198 (238)
T ss_dssp S--EEEETTEEEEEECC-TT-EEEEECCTSSEEEEETTTTEEE-----------------------------------EE
T ss_pred CcceeeecccccceEEE-CC-EEEEEcCCCeEEEEECCCCCEE-----------------------------------EE
Confidence 1 1 233333 44 6666777775333388887510 10
Q ss_pred cccceeEEeecCCcEEEeeecccCCEEEEEecCCeEEEEEeCC
Q 018248 296 SKWSMAQFRLPENVQYLVGFGRQNNTIVIVGLDGSYYKCEFDP 338 (359)
Q Consensus 296 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~ 338 (359)
. +...... ...+++..|++++.+|.++.|++..
T Consensus 199 ~---------~~~~~~~-~~~~~~~~l~~~~~~~~l~~~d~~t 231 (238)
T PF13360_consen 199 K---------PISGIYS-LPSVDGGTLYVTSSDGRLYALDLKT 231 (238)
T ss_dssp E---------CSS-ECE-CEECCCTEEEEEETTTEEEEEETTT
T ss_pred e---------cCCCccC-CceeeCCEEEEEeCCCEEEEEECCC
Confidence 0 0111111 2456778999888999999998775
No 295
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.93 E-value=7e-06 Score=63.27 Aligned_cols=127 Identities=9% Similarity=-0.025 Sum_probs=89.5
Q ss_pred CCEEEEec-CCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEECCCccEEeeeccCc
Q 018248 18 HGCFATGT-ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDDHENRYLGELSFRS 96 (359)
Q Consensus 18 g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~ 96 (359)
.++++.|+ .+.+.-.|..+++...+..+ ...+.+-++. -++.+++.. ..+.+++.+.++|+.+..+...+
T Consensus 23 kT~v~igSHs~~~~avd~~sG~~~We~il----g~RiE~sa~v-vgdfVV~GC----y~g~lYfl~~~tGs~~w~f~~~~ 93 (354)
T KOG4649|consen 23 KTLVVIGSHSGIVIAVDPQSGNLIWEAIL----GVRIECSAIV-VGDFVVLGC----YSGGLYFLCVKTGSQIWNFVILE 93 (354)
T ss_pred ceEEEEecCCceEEEecCCCCcEEeehhh----CceeeeeeEE-ECCEEEEEE----ccCcEEEEEecchhheeeeeehh
Confidence 35667788 88889999999988887776 4555554444 466666666 67999999999998888887444
Q ss_pred ceeE-EEEecceeEEE---ecCeEEEEEcccceeeeeEeccCCCceeeeeecCCCccEEEe
Q 018248 97 EVKN-VRLRRDRIVVV---LNQKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAGPMVMAC 153 (359)
Q Consensus 97 ~v~~-~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 153 (359)
.|.+ ....+++.++. .|++.+..|.++...+...+.........++.+-...++.++
T Consensus 94 ~vk~~a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g~~sly~a~ 154 (354)
T KOG4649|consen 94 TVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPGDGSLYAAI 154 (354)
T ss_pred hhccceEEcCCCceEEEecCCCcEEEecccccceEEecccCCceeccceecCCCceEEEEe
Confidence 4543 33456666665 899999999998888887765554444455666444455554
No 296
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.93 E-value=2.5e-06 Score=73.99 Aligned_cols=224 Identities=13% Similarity=0.087 Sum_probs=127.9
Q ss_pred CCEEEEec-CCceEEEEcCCCcceeeeecccCCCCc-------eeEEEEeccCCEEEEEecCCCCCCeEEEEECCCccEE
Q 018248 18 HGCFATGT-ETGFRVYLSDPYKPIMRRDFDRNPRGG-------TQLVSMLFRSNIICLVNSGPHQSNKVMIWDDHENRYL 89 (359)
Q Consensus 18 g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~h~~~-------v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~ 89 (359)
+..+.+++ ++.+.-+|.++++......+. ..... ...-.....++.+++.+ .++.+..+|.++|+.+
T Consensus 69 ~~~vy~~~~~g~l~ald~~tG~~~W~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~v~v~~----~~g~l~ald~~tG~~~ 143 (394)
T PRK11138 69 YNKVYAADRAGLVKALDADTGKEIWSVDLS-EKDGWFSKNKSALLSGGVTVAGGKVYIGS----EKGQVYALNAEDGEVA 143 (394)
T ss_pred CCEEEEECCCCeEEEEECCCCcEeeEEcCC-CcccccccccccccccccEEECCEEEEEc----CCCEEEEEECCCCCCc
Confidence 44555555 889999999999888877764 10000 00000111244555444 5799999999999998
Q ss_pred eeeccCcceeEEEEecceeEEE--ecCeEEEEEcccceeeeeEeccCCCcee-eeeec--CCCccEEEecCCCCeeEEE-
Q 018248 90 GELSFRSEVKNVRLRRDRIVVV--LNQKVYVYNFTDLKLVDQIETVVNPTGL-CDVSQ--NAGPMVMACPGLLKGQVRV- 163 (359)
Q Consensus 90 ~~~~~~~~v~~~~~~~~~~~~~--~d~~i~i~d~~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~~l~~~g~~d~~v~~- 163 (359)
.+.+....+.+--.-.++.+++ .++.+..+|.++|+.+............ ..-+| .++.. ++ +..++.+..
T Consensus 144 W~~~~~~~~~ssP~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~~~~v-~~--~~~~g~v~a~ 220 (394)
T PRK11138 144 WQTKVAGEALSRPVVSDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATAFGGA-IV--GGDNGRVSAV 220 (394)
T ss_pred ccccCCCceecCCEEECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEECCEE-EE--EcCCCEEEEE
Confidence 8887544443321222455555 7889999999999998887643211100 00011 12222 22 234666665
Q ss_pred EecCCeeeEEeeccc----c---cccEEEEcc--CCcEEEEEeCCCCeEEEEEcCCCcEEEEeecCCCCcceEEEEecCC
Q 018248 164 EDYGTKKSKYITAHA----S---RIASIAMTL--DGRFVATASSKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSN 234 (359)
Q Consensus 164 ~~~~~~~~~~~~~~~----~---~i~~~~~s~--~~~~l~~~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~ 234 (359)
+..+++.+-...... . ....+.-+| .+..++.++.+|. +..+|..+|+.+-..... ....+.. +
T Consensus 221 d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~-l~ald~~tG~~~W~~~~~----~~~~~~~--~ 293 (394)
T PRK11138 221 LMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGN-LVALDLRSGQIVWKREYG----SVNDFAV--D 293 (394)
T ss_pred EccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCe-EEEEECCCCCEEEeecCC----CccCcEE--E
Confidence 444444332221100 0 011111122 2445667778898 999999999887655431 1112222 4
Q ss_pred CCEEEEEcCCCcEEEEEccCCC
Q 018248 235 AQWLAASSDKGTVHVFGLKVDS 256 (359)
Q Consensus 235 ~~~l~~~~~dg~i~iw~~~~~~ 256 (359)
+..|+.++.+|.+..+|.++++
T Consensus 294 ~~~vy~~~~~g~l~ald~~tG~ 315 (394)
T PRK11138 294 GGRIYLVDQNDRVYALDTRGGV 315 (394)
T ss_pred CCEEEEEcCCCeEEEEECCCCc
Confidence 5677778889999999998876
No 297
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.92 E-value=6.3e-06 Score=66.33 Aligned_cols=196 Identities=14% Similarity=0.149 Sum_probs=126.9
Q ss_pred EEEeccC-CEEEEEecCCCCCCeEEEEECCCccEEeeecc-Ccce--eEEEEecceeEEE--------ecCeEEEEEcc-
Q 018248 56 VSMLFRS-NIICLVNSGPHQSNKVMIWDDHENRYLGELSF-RSEV--KNVRLRRDRIVVV--------LNQKVYVYNFT- 122 (359)
Q Consensus 56 ~~~~~~~-~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~-~~~v--~~~~~~~~~~~~~--------~d~~i~i~d~~- 122 (359)
++.+|.. ..++++-- .-....+||..+++....+.. ++.- -.-.|++||+++. ..|.|-|||..
T Consensus 10 ~a~~p~~~~avafaRR---PG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~ 86 (305)
T PF07433_consen 10 VAAHPTRPEAVAFARR---PGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAAR 86 (305)
T ss_pred eeeCCCCCeEEEEEeC---CCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcC
Confidence 4555633 34444431 224568899999998887762 2221 1467999999888 46789999997
Q ss_pred cceeeeeEeccCCCceeeeeecCCCccEEEecCCC----C------------eeEEEEecCCeeeEE--e--eccccccc
Q 018248 123 DLKLVDQIETVVNPTGLCDVSQNAGPMVMACPGLL----K------------GQVRVEDYGTKKSKY--I--TAHASRIA 182 (359)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~----d------------~~v~~~~~~~~~~~~--~--~~~~~~i~ 182 (359)
+.+.+..+..+.-.-.-+.+.|+++.+++|-.|-. . ..++++..++..+.. + .-|+..|.
T Consensus 87 ~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiR 166 (305)
T PF07433_consen 87 GYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIR 166 (305)
T ss_pred CcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCcccccccee
Confidence 67788888776555556778899987666653211 1 223334445554444 3 33777899
Q ss_pred EEEEccCCcEEEEEeCCCC------eEEEEEcCCCcEEEEeecC-----CCCcceEEEEecCCCCEEEEEc-CCCcEEEE
Q 018248 183 SIAMTLDGRFVATASSKGT------LIRVFNTMDGSLLQEMRRG-----AERAEIYSLAFSSNAQWLAASS-DKGTVHVF 250 (359)
Q Consensus 183 ~~~~s~~~~~l~~~~~dg~------~i~iwd~~~~~~~~~~~~~-----~~~~~i~~~~~s~~~~~l~~~~-~dg~i~iw 250 (359)
-+++.++|..++..-..|. +|-+++ .++.+..+... .-.+.+-+|++++++..+++.+ .-+.+.+|
T Consensus 167 HLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~--~g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~ 244 (305)
T PF07433_consen 167 HLAVDGDGTVAFAMQYQGDPGDAPPLVALHR--RGGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVW 244 (305)
T ss_pred eEEecCCCcEEEEEecCCCCCccCCeEEEEc--CCCcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEE
Confidence 9999999987766544442 134443 33333333321 1236899999999998876555 66789999
Q ss_pred EccCCC
Q 018248 251 GLKVDS 256 (359)
Q Consensus 251 ~~~~~~ 256 (359)
|..++.
T Consensus 245 d~~tg~ 250 (305)
T PF07433_consen 245 DAATGR 250 (305)
T ss_pred ECCCCC
Confidence 999987
No 298
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.90 E-value=8.5e-06 Score=65.59 Aligned_cols=234 Identities=18% Similarity=0.199 Sum_probs=144.7
Q ss_pred CCceEEEEEcc-CCCEEEEec-CCc-eEEEEcCCCcceeeeecccCCCCce--eEEEEeccCCEEEEEecCCC-CCCeEE
Q 018248 6 PITIHHLALNQ-DHGCFATGT-ETG-FRVYLSDPYKPIMRRDFDRNPRGGT--QLVSMLFRSNIICLVNSGPH-QSNKVM 79 (359)
Q Consensus 6 ~~~v~~~~~s~-~g~~l~~~~-d~~-i~iw~~~~~~~~~~~~~~~~h~~~v--~~~~~~~~~~~~~~~~~~~~-~d~~i~ 79 (359)
+..-..++.+| ++..++.+. -|. ..+||..+++......-. .+.- .--.|+++++.++..-.... ..|.|-
T Consensus 4 P~RgH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~---~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~Ig 80 (305)
T PF07433_consen 4 PARGHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAP---PGRHFYGHGVFSPDGRLLYTTENDYETGRGVIG 80 (305)
T ss_pred CccccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCC---CCCEEecCEEEcCCCCEEEEeccccCCCcEEEE
Confidence 45667889999 566677787 555 789999987766433321 1111 12357777877765532211 468999
Q ss_pred EEECC-CccEEeeec-cCcceeEEEEecceeEEE-ec--------------------CeEEEEEcccceeeeeEec----
Q 018248 80 IWDDH-ENRYLGELS-FRSEVKNVRLRRDRIVVV-LN--------------------QKVYVYNFTDLKLVDQIET---- 132 (359)
Q Consensus 80 iwd~~-~~~~~~~~~-~~~~v~~~~~~~~~~~~~-~d--------------------~~i~i~d~~~~~~~~~~~~---- 132 (359)
|||.. +.+.+.++. +.-....+.+.||+..++ .+ -.+...|..+|+.+.+...
T Consensus 81 Vyd~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~ 160 (305)
T PF07433_consen 81 VYDAARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDL 160 (305)
T ss_pred EEECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccc
Confidence 99988 567777777 666677888999995444 22 2455566667777666433
Q ss_pred cCCCceeeeeecCCCccEEEecCCCCe-------eEEEEecCCeeeEEee-------cccccccEEEEccCCcEEEEEeC
Q 018248 133 VVNPTGLCDVSQNAGPMVMACPGLLKG-------QVRVEDYGTKKSKYIT-------AHASRIASIAMTLDGRFVATASS 198 (359)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~l~~~g~~d~-------~v~~~~~~~~~~~~~~-------~~~~~i~~~~~s~~~~~l~~~~~ 198 (359)
+...+.-+++..++. +++..-..| .+.++... ..+..+. .-.+.+-+|++++++.++++.+-
T Consensus 161 ~~lSiRHLa~~~~G~---V~~a~Q~qg~~~~~~PLva~~~~g-~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsP 236 (305)
T PF07433_consen 161 HQLSIRHLAVDGDGT---VAFAMQYQGDPGDAPPLVALHRRG-GALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSP 236 (305)
T ss_pred cccceeeEEecCCCc---EEEEEecCCCCCccCCeEEEEcCC-CcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECC
Confidence 444556666666543 111111111 11112222 2122222 23467899999999998888876
Q ss_pred CCCeEEEEEcCCCcEEEEeecCCCCcceEEEEecCCCCEEEEEcCCCcEEEEEccC
Q 018248 199 KGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSNAQWLAASSDKGTVHVFGLKV 254 (359)
Q Consensus 199 dg~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~ 254 (359)
.|..+.+||..+++.+..... ..+..++-.+++ ++++.+ .|. ++.+..
T Consensus 237 rGg~~~~~d~~tg~~~~~~~l----~D~cGva~~~~~-f~~ssG-~G~--~~~~~~ 284 (305)
T PF07433_consen 237 RGGRVAVWDAATGRLLGSVPL----PDACGVAPTDDG-FLVSSG-QGQ--LIRLSP 284 (305)
T ss_pred CCCEEEEEECCCCCEeecccc----CceeeeeecCCc-eEEeCC-Ccc--EEEccC
Confidence 665599999999998877754 356778877776 555544 453 444443
No 299
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=98.90 E-value=1.2e-05 Score=69.45 Aligned_cols=224 Identities=16% Similarity=0.172 Sum_probs=118.4
Q ss_pred EEEEccCCCEEEEecCC------------ceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeE
Q 018248 11 HLALNQDHGCFATGTET------------GFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKV 78 (359)
Q Consensus 11 ~~~~s~~g~~l~~~~d~------------~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i 78 (359)
.++.+|.|..+|...|. .|+||+.. |+.+....+. .+.+-.+.|..+.+ ++++. .||.+
T Consensus 33 ~va~a~~gGpIAi~~d~~k~~~~~~~~p~~I~iys~s-G~ll~~i~w~---~~~iv~~~wt~~e~-LvvV~----~dG~v 103 (410)
T PF04841_consen 33 IVAVAPYGGPIAIIRDESKLVPVGSAKPNSIQIYSSS-GKLLSSIPWD---SGRIVGMGWTDDEE-LVVVQ----SDGTV 103 (410)
T ss_pred eEEEcCCCceEEEEecCcccccccCCCCcEEEEECCC-CCEeEEEEEC---CCCEEEEEECCCCe-EEEEE----cCCEE
Confidence 45667777777777644 48888876 3455556665 37777777776544 44555 58999
Q ss_pred EEEECCCccEEeeec--------cCcceeEEEEecceeEEE-ecCeEEEEEcccce-eeeeEeccCCCceeeeeecCCCc
Q 018248 79 MIWDDHENRYLGELS--------FRSEVKNVRLRRDRIVVV-LNQKVYVYNFTDLK-LVDQIETVVNPTGLCDVSQNAGP 148 (359)
Q Consensus 79 ~iwd~~~~~~~~~~~--------~~~~v~~~~~~~~~~~~~-~d~~i~i~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 148 (359)
+++|+. |+....+. ....+....+..+|..+. .++.+.+.+-.... ....+.............+....
T Consensus 104 ~vy~~~-G~~~fsl~~~i~~~~v~e~~i~~~~~~~~GivvLt~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 182 (410)
T PF04841_consen 104 RVYDLF-GEFQFSLGEEIEEEKVLECRIFAIWFYKNGIVVLTGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTV 182 (410)
T ss_pred EEEeCC-CceeechhhhccccCcccccccccccCCCCEEEECCCCeEEEEeCccccchhhccccCCCccccccccccccc
Confidence 999975 33311111 112222234444676655 66666555432211 11111110000000000111111
Q ss_pred cEEEecCCCCeeEEEEecCCeeeEEeec-------ccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcEEEEeecCC
Q 018248 149 MVMACPGLLKGQVRVEDYGTKKSKYITA-------HASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRRGA 221 (359)
Q Consensus 149 ~~l~~~g~~d~~v~~~~~~~~~~~~~~~-------~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~~~~~~~~~ 221 (359)
..+.. .++.+.+....+..+..+.. ..+++..+++||+|+++|.-..+|. +.+....-.+.+.++...
T Consensus 183 i~~l~---~~~~~~i~~~~g~~i~~i~~~~~~~i~~~~~i~~iavSpng~~iAl~t~~g~-l~v~ssDf~~~~~e~~~~- 257 (410)
T PF04841_consen 183 IPLLS---SDRVVEILLANGETIYIIDENSFKQIDSDGPIIKIAVSPNGKFIALFTDSGN-LWVVSSDFSEKLCEFDTD- 257 (410)
T ss_pred ceEee---cCcceEEEEecCCEEEEEEccccccccCCCCeEEEEECCCCCEEEEEECCCC-EEEEECcccceeEEeecC-
Confidence 11111 12233332222222222222 2368999999999999999999999 999887666666666653
Q ss_pred CCcceEEEEecCCCCEEEEEcCCCcEEEEE
Q 018248 222 ERAEIYSLAFSSNAQWLAASSDKGTVHVFG 251 (359)
Q Consensus 222 ~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~ 251 (359)
.......+.|.-+...++.- ...+.+..
T Consensus 258 ~~~~p~~~~WCG~dav~l~~--~~~l~lvg 285 (410)
T PF04841_consen 258 SKSPPKQMAWCGNDAVVLSW--EDELLLVG 285 (410)
T ss_pred cCCCCcEEEEECCCcEEEEe--CCEEEEEC
Confidence 23466778886554433332 33455544
No 300
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.90 E-value=4e-07 Score=80.11 Aligned_cols=284 Identities=10% Similarity=0.143 Sum_probs=182.7
Q ss_pred CCCCceEEEEEccCC------------CEEEEec-CCceEEEEcCCCcceeeeecccCCCCceeEEEEeccC----CEEE
Q 018248 4 PDPITIHHLALNQDH------------GCFATGT-ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRS----NIIC 66 (359)
Q Consensus 4 ~h~~~v~~~~~s~~g------------~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~----~~~~ 66 (359)
.|+..|+.+.|.|-. -+||++. .|.|.+||........ .++ .|..++..++|.+.. ..++
T Consensus 53 ~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~--~l~-~~~~~~qdl~W~~~rd~Srd~Ll 129 (1062)
T KOG1912|consen 53 LHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVIN--WLS-HSNDSVQDLCWVPARDDSRDVLL 129 (1062)
T ss_pred cCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhh--hhc-CCCcchhheeeeeccCcchheeE
Confidence 478899999998632 2457777 8999999998655543 333 567888888887643 2344
Q ss_pred EEecCCCCCCeEEEEECCCccEEeeeccC-cceeEEEEecc-----------eeEE------------------------
Q 018248 67 LVNSGPHQSNKVMIWDDHENRYLGELSFR-SEVKNVRLRRD-----------RIVV------------------------ 110 (359)
Q Consensus 67 ~~~~~~~~d~~i~iwd~~~~~~~~~~~~~-~~v~~~~~~~~-----------~~~~------------------------ 110 (359)
... ....+.+|+..+|+....+... ....|+.+.|- |..+
T Consensus 130 aIh----~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~S 205 (1062)
T KOG1912|consen 130 AIH----GSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHS 205 (1062)
T ss_pred Eec----CCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCcc
Confidence 444 2488999998888776665522 22222333331 0000
Q ss_pred ------------------------------------------E-ecCeEEEEEcccceeeeeEeccCCCceeeeeecCCC
Q 018248 111 ------------------------------------------V-LNQKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAG 147 (359)
Q Consensus 111 ------------------------------------------~-~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (359)
+ ....+.++|++-..++..+....+.+..+.+-|+++
T Consensus 206 dl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~prellv~dle~~~~l~vvpier~~akfv~vlP~~~ 285 (1062)
T KOG1912|consen 206 DLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPRELLVFDLEYECCLAVVPIERGGAKFVDVLPDPR 285 (1062)
T ss_pred chhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEeccceEEEcchhhceeEEEEeccCCcceeEeccCCC
Confidence 0 344566666666666666666667777888889888
Q ss_pred ccEEEecCCCCeeEEEEecCCe--------------------eeEEe---------------------------------
Q 018248 148 PMVMACPGLLKGQVRVEDYGTK--------------------KSKYI--------------------------------- 174 (359)
Q Consensus 148 ~~~l~~~g~~d~~v~~~~~~~~--------------------~~~~~--------------------------------- 174 (359)
.-.+.+ ...||.+.+|..... .++.+
T Consensus 286 rd~Lfc-lH~nG~ltirvrk~~~~~f~~~~~~l~~dl~~Q~~~vr~m~~~rp~~~~~cPs~~sa~avl~s~g~~~~w~l~ 364 (1062)
T KOG1912|consen 286 RDALFC-LHSNGRLTIRVRKEEPTEFKKPNASLSMDLGEQVHVVRPMEEFRPVIGASCPSTPSALAVLYSSGDSTFWQLS 364 (1062)
T ss_pred cceEEE-EecCCeEEEEEeeccCccccccchhhccccccceEEEeechhcccceeecCCCChhhhhhhhhcchhHHHhhh
Confidence 777777 667888888765420 00000
Q ss_pred ---------------------------------------ecccccccEEEEcc-----------CC-------cEEEEEe
Q 018248 175 ---------------------------------------TAHASRIASIAMTL-----------DG-------RFVATAS 197 (359)
Q Consensus 175 ---------------------------------------~~~~~~i~~~~~s~-----------~~-------~~l~~~~ 197 (359)
.+|.....+....| .| .++|.|.
T Consensus 365 ~~ri~~~~~s~~iel~~pf~f~~~~~~v~k~~l~~LS~dg~h~sGs~~~~~~p~p~~t~~~~~p~~n~~~~~~pLvAvGT 444 (1062)
T KOG1912|consen 365 NGRIHLDYRSSSIELVLPFDFNLSTKLVGKTSLISLSDDGSHSSGSTCVRMRPMPELTKVENDPGGNTPAGTVPLVAVGT 444 (1062)
T ss_pred cCCcCcccccccccccccccccCceeehhhccccchhhcCCCCCCceeeecccCcccceeecCCCCCccceeeeeEEeec
Confidence 01222222222211 11 2678899
Q ss_pred CCCCeEEEEEcCCCcEEEEeecCCCCcceEEEEecCCCCEEEEEc---------CCCcEEEEEccCCCCCCCCCccccCC
Q 018248 198 SKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSNAQWLAASS---------DKGTVHVFGLKVDSGSPGTSKLHSAS 268 (359)
Q Consensus 198 ~dg~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~---------~dg~i~iw~~~~~~~~~~~~~~~~~~ 268 (359)
..|+ |.++|+.++..-..+.. |.+.|.++.|-...+++-.+. --+.+.|-|+++|....
T Consensus 445 ~sGT-V~vvdvst~~v~~~fsv--ht~~VkgleW~g~sslvSfsys~~n~~sg~vrN~l~vtdLrtGlsk~--------- 512 (1062)
T KOG1912|consen 445 NSGT-VDVVDVSTNAVAASFSV--HTSLVKGLEWLGNSSLVSFSYSHVNSASGGVRNDLVVTDLRTGLSKR--------- 512 (1062)
T ss_pred CCce-EEEEEecchhhhhhhcc--cccceeeeeeccceeEEEeeeccccccccceeeeEEEEEcccccccc---------
Confidence 9999 99999999988888877 788999999987665553332 12346677777765221
Q ss_pred CCCccCCCCCceeeeeEeeeecceEEecccceeEEeecC-CcEEEeeecccCCEEEEEecCCeEEEEEeCC
Q 018248 269 EPNLSSKNSSAISSFRFIRGVLPKYFSSKWSMAQFRLPE-NVQYLVGFGRQNNTIVIVGLDGSYYKCEFDP 338 (359)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~ 338 (359)
| ..++.+. .+|..+..|.-+++|+..-.+--+.+|++..
T Consensus 513 -------------------------f------R~l~~~despI~~irvS~~~~yLai~Fr~~plEiwd~kt 552 (1062)
T KOG1912|consen 513 -------------------------F------RGLQKPDESPIRAIRVSSSGRYLAILFRREPLEIWDLKT 552 (1062)
T ss_pred -------------------------c------ccCCCCCcCcceeeeecccCceEEEEecccchHHHhhcc
Confidence 1 1112222 6788899999999999999999999998843
No 301
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.89 E-value=9.1e-08 Score=73.14 Aligned_cols=189 Identities=12% Similarity=0.153 Sum_probs=109.4
Q ss_pred CCceeEEEEeccCCEEEEEecCCCCCCeEEEEECCCccEEeeeccCccee-----EEEEecceeEEE--------ecCeE
Q 018248 50 RGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDDHENRYLGELSFRSEVK-----NVRLRRDRIVVV--------LNQKV 116 (359)
Q Consensus 50 ~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~-----~~~~~~~~~~~~--------~d~~i 116 (359)
.++-..-+.+-.++.+++.. .|+.+.+.+.+. ...+.+.-++. +.+....+..+. .-+..
T Consensus 89 sep~p~~~~s~~~t~V~~~~----~dg~~~v~s~~~---~~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~ 161 (319)
T KOG4714|consen 89 SEIDPNDACTMTDNRVCIGY----ADGSLAVFSTDK---DLALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQDNF 161 (319)
T ss_pred CCCCCcccccccCCceEecC----CCceEEEEechH---HHhhhhhcccccccccccceeecccEEecCCcceEeeccce
Confidence 33333333333455666555 789999998654 22222221111 112222333332 33445
Q ss_pred EEEEcccceeeeeEeccCCCceeeeeecCCCccEEEecCCCCeeEEEEecCC--eeeEEeecccccccEEEEcc-CCcEE
Q 018248 117 YVYNFTDLKLVDQIETVVNPTGLCDVSQNAGPMVMACPGLLKGQVRVEDYGT--KKSKYITAHASRIASIAMTL-DGRFV 193 (359)
Q Consensus 117 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~v~~~~~~~--~~~~~~~~~~~~i~~~~~s~-~~~~l 193 (359)
+.|+++..+.+..-......+..++-+|.... +.+.|+.||.+-+|+.+. .+...+..|+.+++.+-|+| ++..|
T Consensus 162 ~a~~~~p~~t~~~~~~~~~~v~~l~~hp~qq~--~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~L 239 (319)
T KOG4714|consen 162 YANTLDPIKTLIPSKKALDAVTALCSHPAQQH--LVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHL 239 (319)
T ss_pred eeecccccccccccccccccchhhhCCccccc--EEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchhe
Confidence 56665433222221222334777777887766 444488999999988775 34455788999999999998 56789
Q ss_pred EEEeCCCCeEEEEEcCCCcEEEE----------eecC-------------CCCcceEEEEecCCCCEEEEEcCCCcEEEE
Q 018248 194 ATASSKGTLIRVFNTMDGSLLQE----------MRRG-------------AERAEIYSLAFSSNAQWLAASSDKGTVHVF 250 (359)
Q Consensus 194 ~~~~~dg~~i~iwd~~~~~~~~~----------~~~~-------------~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw 250 (359)
+++++||. +.-||..+ +.+.. +.+. .....|+++. --|..|++|++-+.|+++
T Consensus 240 ft~sedGs-lw~wdas~-~~l~i~~~~s~~s~WLsgD~v~s~i~i~~ll~~~~~SinsfD--V~g~~lVcgtd~eaIyl~ 315 (319)
T KOG4714|consen 240 FTCSEDGS-LWHWDAST-TFLSISNQASVISSWLSGDPVKSRIEITSLLPSRSLSINSFD--VLGPCLVCGTDAEAIYLT 315 (319)
T ss_pred eEecCCCc-EEEEcCCC-ceEEecCccccccccccCCcccceEeeeccccccceeeeeee--ccCceEEeccccceEEEe
Confidence 99999999 99999653 22211 0000 0001223322 347788998888888876
Q ss_pred E
Q 018248 251 G 251 (359)
Q Consensus 251 ~ 251 (359)
+
T Consensus 316 ~ 316 (319)
T KOG4714|consen 316 R 316 (319)
T ss_pred c
Confidence 5
No 302
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.87 E-value=1.4e-08 Score=85.64 Aligned_cols=233 Identities=12% Similarity=0.201 Sum_probs=151.9
Q ss_pred CCCCceEEEEEccCCCEEEEec-CCceEEEEcCCCc-----ceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCe
Q 018248 4 PDPITIHHLALNQDHGCFATGT-ETGFRVYLSDPYK-----PIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNK 77 (359)
Q Consensus 4 ~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~-----~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~ 77 (359)
.|...|..++--.+.+-+++++ |++|++|.+.+.. ..+..++. .|..++..+.+..+-..++ + .|+.
T Consensus 733 GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~-aHkk~i~~igfL~~lr~i~--S----cD~g 805 (1034)
T KOG4190|consen 733 GHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQ-AHKKPIHDIGFLADLRSIA--S----CDGG 805 (1034)
T ss_pred CcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhh-hccCcccceeeeeccceee--e----ccCc
Confidence 3667777777666777888888 9999999987422 22334444 7899998888876655544 4 4799
Q ss_pred EEEEECCCccEEeeec---cCcceeEEEEecc--e-eEEE---ecCeEEEEEcccceeeeeEec-----cCCCceeeeee
Q 018248 78 VMIWDDHENRYLGELS---FRSEVKNVRLRRD--R-IVVV---LNQKVYVYNFTDLKLVDQIET-----VVNPTGLCDVS 143 (359)
Q Consensus 78 i~iwd~~~~~~~~~~~---~~~~v~~~~~~~~--~-~~~~---~d~~i~i~d~~~~~~~~~~~~-----~~~~~~~~~~~ 143 (359)
|.+||.--++.+..+. ..+.+..+..-++ . .+++ ...+|+++|.+..+-...++. +...+.++++.
T Consensus 806 iHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa 885 (1034)
T KOG4190|consen 806 IHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVA 885 (1034)
T ss_pred ceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEec
Confidence 9999988887766543 2233333333332 2 2233 678999999988766555543 33446778888
Q ss_pred cCCCccEEEecCCCCeeEEE-EecCCeeeEEeecccccccEEEEccCCcEEEEEeCCCCeEEE-EEcCCCcEEEEeecCC
Q 018248 144 QNAGPMVMACPGLLKGQVRV-EDYGTKKSKYITAHASRIASIAMTLDGRFVATASSKGTLIRV-FNTMDGSLLQEMRRGA 221 (359)
Q Consensus 144 ~~~~~~~l~~~g~~d~~v~~-~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~i-wd~~~~~~~~~~~~~~ 221 (359)
+.++. ++. +-.+|.+.+ +.++++.+..++.-......++ .|..+.|+....|.+ +.+ |...++....+.+..
T Consensus 886 ~~GN~--lAa-~LSnGci~~LDaR~G~vINswrpmecdllqla-apsdq~L~~saldHs-laVnWhaldgimh~q~kpp- 959 (1034)
T KOG4190|consen 886 DKGNK--LAA-ALSNGCIAILDARNGKVINSWRPMECDLLQLA-APSDQALAQSALDHS-LAVNWHALDGIMHLQDKPP- 959 (1034)
T ss_pred cCcch--hhH-HhcCCcEEEEecCCCceeccCCcccchhhhhc-CchhHHHHhhcccce-eEeeehhcCCeeeeccCCC-
Confidence 88877 554 445777777 7777777776665555555554 366677888888888 888 987777665555432
Q ss_pred CCcceEEEEecCCCCEEEEEcCCCcEEEEEc
Q 018248 222 ERAEIYSLAFSSNAQWLAASSDKGTVHVFGL 252 (359)
Q Consensus 222 ~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~ 252 (359)
+.+..-+ -.-|..|+++.....+.||.-
T Consensus 960 -pepahfl--qsvgpSLV~a~~Gn~lgVYad 987 (1034)
T KOG4190|consen 960 -PEPAHFL--QSVGPSLVTAQNGNILGVYAD 987 (1034)
T ss_pred -Ccchhhh--hccCceeEEeccCcEEEEEec
Confidence 1111111 123667777777677777743
No 303
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.87 E-value=1e-08 Score=56.27 Aligned_cols=39 Identities=31% Similarity=0.594 Sum_probs=35.5
Q ss_pred CcEEEEeecCCCCcceEEEEecCCCCEEEEEcCCCcEEEEE
Q 018248 211 GSLLQEMRRGAERAEIYSLAFSSNAQWLAASSDKGTVHVFG 251 (359)
Q Consensus 211 ~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~ 251 (359)
++++.++.. |...|++++|+|++++|++++.|+.|++||
T Consensus 1 g~~~~~~~~--h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRG--HSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEES--SSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcC--CCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 356778887 788999999999999999999999999997
No 304
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.84 E-value=9.8e-06 Score=70.33 Aligned_cols=218 Identities=10% Similarity=0.048 Sum_probs=123.8
Q ss_pred CCEEEEec-CCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEECCCccEEeeeccCc
Q 018248 18 HGCFATGT-ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDDHENRYLGELSFRS 96 (359)
Q Consensus 18 g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~ 96 (359)
+..+++++ ++.+..+|.++++......+. +.+...-.. .++.+++.. .++.+..+|.++|+.+..+....
T Consensus 120 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~----~~~~ssP~v-~~~~v~v~~----~~g~l~ald~~tG~~~W~~~~~~ 190 (394)
T PRK11138 120 GGKVYIGSEKGQVYALNAEDGEVAWQTKVA----GEALSRPVV-SDGLVLVHT----SNGMLQALNESDGAVKWTVNLDV 190 (394)
T ss_pred CCEEEEEcCCCEEEEEECCCCCCcccccCC----CceecCCEE-ECCEEEEEC----CCCEEEEEEccCCCEeeeecCCC
Confidence 44566666 899999999999988877653 222111111 234444444 46899999999999988876332
Q ss_pred ce------eEEEEecceeEEE--ecCeEEEEEcccceeeeeEeccCCC-------ceeeeeec--CCCccEEEecCCCCe
Q 018248 97 EV------KNVRLRRDRIVVV--LNQKVYVYNFTDLKLVDQIETVVNP-------TGLCDVSQ--NAGPMVMACPGLLKG 159 (359)
Q Consensus 97 ~v------~~~~~~~~~~~~~--~d~~i~i~d~~~~~~~~~~~~~~~~-------~~~~~~~~--~~~~~~l~~~g~~d~ 159 (359)
+. .+-... ++..++ .++.+..+|..+++.+......... ...+..+| .++.+++. +.+|
T Consensus 191 ~~~~~~~~~sP~v~-~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~---~~~g 266 (394)
T PRK11138 191 PSLTLRGESAPATA-FGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYAL---AYNG 266 (394)
T ss_pred CcccccCCCCCEEE-CCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEE---EcCC
Confidence 11 111122 233333 7889999999988877665321110 00011111 22332222 2466
Q ss_pred eEEEEe-cCCeeeEEeecccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcEEEEeecCCCCcceEEEEecCCCCEE
Q 018248 160 QVRVED-YGTKKSKYITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSNAQWL 238 (359)
Q Consensus 160 ~v~~~~-~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l 238 (359)
.+...+ .+++.+-... ......+. ..+..++.++.+|. +..+|..+|+.+-......+ ....+... .+.+|
T Consensus 267 ~l~ald~~tG~~~W~~~--~~~~~~~~--~~~~~vy~~~~~g~-l~ald~~tG~~~W~~~~~~~-~~~~sp~v--~~g~l 338 (394)
T PRK11138 267 NLVALDLRSGQIVWKRE--YGSVNDFA--VDGGRIYLVDQNDR-VYALDTRGGVELWSQSDLLH-RLLTAPVL--YNGYL 338 (394)
T ss_pred eEEEEECCCCCEEEeec--CCCccCcE--EECCEEEEEcCCCe-EEEEECCCCcEEEcccccCC-CcccCCEE--ECCEE
Confidence 666533 3444332221 11111222 24556777888999 99999999987654432111 11222222 24577
Q ss_pred EEEcCCCcEEEEEccCCC
Q 018248 239 AASSDKGTVHVFGLKVDS 256 (359)
Q Consensus 239 ~~~~~dg~i~iw~~~~~~ 256 (359)
+.++.+|.|++.|..+++
T Consensus 339 ~v~~~~G~l~~ld~~tG~ 356 (394)
T PRK11138 339 VVGDSEGYLHWINREDGR 356 (394)
T ss_pred EEEeCCCEEEEEECCCCC
Confidence 788999999999998876
No 305
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.84 E-value=1.1e-08 Score=56.14 Aligned_cols=38 Identities=47% Similarity=0.683 Sum_probs=36.0
Q ss_pred eeeEEeecccccccEEEEccCCcEEEEEeCCCCeEEEEE
Q 018248 169 KKSKYITAHASRIASIAMTLDGRFVATASSKGTLIRVFN 207 (359)
Q Consensus 169 ~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd 207 (359)
+++..+.+|...|++++|+|++.+|++++.|+. |++||
T Consensus 2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~-i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSDGT-IRVWD 39 (39)
T ss_dssp EEEEEEESSSSSEEEEEEETTSSEEEEEETTSE-EEEEE
T ss_pred eEEEEEcCCCCcEEEEEEecccccceeeCCCCE-EEEEC
Confidence 567889999999999999999999999999999 99997
No 306
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.83 E-value=4.9e-07 Score=78.94 Aligned_cols=223 Identities=10% Similarity=0.106 Sum_probs=139.2
Q ss_pred CCCCceEEEEEccCCCEEEEec-CCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEE
Q 018248 4 PDPITIHHLALNQDHGCFATGT-ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWD 82 (359)
Q Consensus 4 ~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd 82 (359)
.|...|.-+.|+.+.+.|.+.. +|-|.+|-+-.+.-..... .......|..++|..++..+.++- .||.|.+=.
T Consensus 69 GH~~sV~vvTWNe~~QKLTtSDt~GlIiVWmlykgsW~EEMi-NnRnKSvV~SmsWn~dG~kIcIvY----eDGavIVGs 143 (1189)
T KOG2041|consen 69 GHNASVMVVTWNENNQKLTTSDTSGLIIVWMLYKGSWCEEMI-NNRNKSVVVSMSWNLDGTKICIVY----EDGAVIVGS 143 (1189)
T ss_pred cCcceEEEEEeccccccccccCCCceEEEEeeecccHHHHHh-hCcCccEEEEEEEcCCCcEEEEEE----ccCCEEEEe
Confidence 4899999999999999999988 9999999887654321111 101245677788888888898888 789988877
Q ss_pred CCCccEEeeec-cCcceeEEEEecceeEEE---ecCeEEEEEcccc-------eeeeeEe----ccCCCceeeee-----
Q 018248 83 DHENRYLGELS-FRSEVKNVRLRRDRIVVV---LNQKVYVYNFTDL-------KLVDQIE----TVVNPTGLCDV----- 142 (359)
Q Consensus 83 ~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~---~d~~i~i~d~~~~-------~~~~~~~----~~~~~~~~~~~----- 142 (359)
+..++ +.--. .......+.|++|...+. .+|.+.+||.+.. .+..... .....+..+.|
T Consensus 144 vdGNR-IwgKeLkg~~l~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~ 222 (1189)
T KOG2041|consen 144 VDGNR-IWGKELKGQLLAHVLWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPY 222 (1189)
T ss_pred eccce-ecchhcchheccceeecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCcc
Confidence 55433 22222 122345788999987665 8999999997431 1111111 11111222222
Q ss_pred ---ecCCCccEEEecCCCCeeEEE-EecCCeeeEEeecccccccEEEEccCCcEEEEEeCCC--------CeEEEEEcCC
Q 018248 143 ---SQNAGPMVMACPGLLKGQVRV-EDYGTKKSKYITAHASRIASIAMTLDGRFVATASSKG--------TLIRVFNTMD 210 (359)
Q Consensus 143 ---~~~~~~~~l~~~g~~d~~v~~-~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg--------~~i~iwd~~~ 210 (359)
-|+... ++. +..+|.+.+ -..+......+. ..-.+..+.|+++|..||+++.+. ..|.+|. .-
T Consensus 223 ~~v~pdrP~--lav-cy~nGr~QiMR~eND~~Pvv~d-tgm~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fys-p~ 297 (1189)
T KOG2041|consen 223 QPVPPDRPR--LAV-CYANGRMQIMRSENDPEPVVVD-TGMKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYS-PY 297 (1189)
T ss_pred ccCCCCCCE--EEE-EEcCceehhhhhcCCCCCeEEe-cccEeecceecCCCcEEEEccCcccccCccccceEEEec-cc
Confidence 223333 333 346777777 222222222222 236788999999999999987643 1155554 46
Q ss_pred CcEEEEeecCCCCcceEEEEecCCCCEEE
Q 018248 211 GSLLQEMRRGAERAEIYSLAFSSNAQWLA 239 (359)
Q Consensus 211 ~~~~~~~~~~~~~~~i~~~~~s~~~~~l~ 239 (359)
|+.+.+++. ....|++++|-..|-.++
T Consensus 298 G~i~gtlkv--pg~~It~lsWEg~gLriA 324 (1189)
T KOG2041|consen 298 GHIVGTLKV--PGSCITGLSWEGTGLRIA 324 (1189)
T ss_pred hhheEEEec--CCceeeeeEEcCCceEEE
Confidence 777778876 456788888865554443
No 307
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.79 E-value=4e-07 Score=69.71 Aligned_cols=73 Identities=15% Similarity=0.348 Sum_probs=59.4
Q ss_pred cccEEEEccCCc-EEEEEeCCCCeEEEEEcCCCcEEEEeecCCCCcceEEEEecC-CCCEEEEEcCCCcEEEEEccC
Q 018248 180 RIASIAMTLDGR-FVATASSKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSS-NAQWLAASSDKGTVHVFGLKV 254 (359)
Q Consensus 180 ~i~~~~~s~~~~-~l~~~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~~~~~dg~i~iw~~~~ 254 (359)
.|.+++-+|..+ .+++|+.||. +-+||.++......+. ..|+.+|+.+-|+| ++..|+++++||.+.-||..+
T Consensus 181 ~v~~l~~hp~qq~~v~cgt~dg~-~~l~d~rn~~~p~S~l-~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 181 AVTALCSHPAQQHLVCCGTDDGI-VGLWDARNVAMPVSLL-KAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred cchhhhCCcccccEEEEecCCCe-EEEEEcccccchHHHH-HHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence 488899888654 6677888898 9999999885544433 22789999999998 677899999999999999875
No 308
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.79 E-value=4.4e-05 Score=62.38 Aligned_cols=239 Identities=14% Similarity=0.159 Sum_probs=140.9
Q ss_pred EEEEEccCCCEEEEec-----------CCceEEEEcCCCcceeeeecccCCCC----ceeEEEEeccCCEEEEEecCCCC
Q 018248 10 HHLALNQDHGCFATGT-----------ETGFRVYLSDPYKPIMRRDFDRNPRG----GTQLVSMLFRSNIICLVNSGPHQ 74 (359)
Q Consensus 10 ~~~~~s~~g~~l~~~~-----------d~~i~iw~~~~~~~~~~~~~~~~h~~----~v~~~~~~~~~~~~~~~~~~~~~ 74 (359)
-.+..+||++.+++++ ...|.+||..+........++.+|.. ......++.+++.+++..-. .
T Consensus 39 ~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~T--P 116 (342)
T PF06433_consen 39 GNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFT--P 116 (342)
T ss_dssp EEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEES--S
T ss_pred CceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheecccccceEEccCCcEEEEEccC--C
Confidence 3467899999987743 23489999998877766666522111 22345666777776665544 3
Q ss_pred CCeEEEEECCCccEEeeeccCcceeEEEEecceeEEE-ecCeEEEEEcc-cceeeeeEe----ccCCCce-eeeeecCCC
Q 018248 75 SNKVMIWDDHENRYLGELSFRSEVKNVRLRRDRIVVV-LNQKVYVYNFT-DLKLVDQIE----TVVNPTG-LCDVSQNAG 147 (359)
Q Consensus 75 d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~d~~i~i~d~~-~~~~~~~~~----~~~~~~~-~~~~~~~~~ 147 (359)
-..|.|.|+..++.+.++..++...-.-..+++...+ .||.+.-..+. .|+...... ....++. .-++...+.
T Consensus 117 a~SVtVVDl~~~kvv~ei~~PGC~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~ 196 (342)
T PF06433_consen 117 ATSVTVVDLAAKKVVGEIDTPGCWLIYPSGNRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDGG 196 (342)
T ss_dssp SEEEEEEETTTTEEEEEEEGTSEEEEEEEETTEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETTTT
T ss_pred CCeEEEEECCCCceeeeecCCCEEEEEecCCCceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceECCCC
Confidence 4788999999999988887665444333344443333 99999998885 555443221 1111111 122333333
Q ss_pred ccEEEecCCCCeeEEEEecCCeeeEE---eec----------ccccccEEEEccCCcEEEEEe---CCC------CeEEE
Q 018248 148 PMVMACPGLLKGQVRVEDYGTKKSKY---ITA----------HASRIASIAMTLDGRFVATAS---SKG------TLIRV 205 (359)
Q Consensus 148 ~~~l~~~g~~d~~v~~~~~~~~~~~~---~~~----------~~~~i~~~~~s~~~~~l~~~~---~dg------~~i~i 205 (359)
..++.+ .+|.|+--+..+..... +.. ..+.-.-+++++....|.+.- .++ +.|.+
T Consensus 197 ~~~F~S---y~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv 273 (342)
T PF06433_consen 197 RLYFVS---YEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWV 273 (342)
T ss_dssp EEEEEB---TTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEE
T ss_pred eEEEEe---cCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEE
Confidence 333333 57788775554433222 110 123445678887655444321 111 12888
Q ss_pred EEcCCCcEEEEeecCCCCcceEEEEecCCCC-EEEEE-cCCCcEEEEEccCCC
Q 018248 206 FNTMDGSLLQEMRRGAERAEIYSLAFSSNAQ-WLAAS-SDKGTVHVFGLKVDS 256 (359)
Q Consensus 206 wd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~-~l~~~-~~dg~i~iw~~~~~~ 256 (359)
+|+.+++.+..+... .++.++..+.+.+ +|++. ..++.+.+||..+++
T Consensus 274 ~D~~t~krv~Ri~l~---~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk 323 (342)
T PF06433_consen 274 YDLKTHKRVARIPLE---HPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGK 323 (342)
T ss_dssp EETTTTEEEEEEEEE---EEESEEEEESSSS-EEEEEETTTTEEEEEETTT--
T ss_pred EECCCCeEEEEEeCC---CccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCc
Confidence 999999999999852 4688999998776 55444 467899999999987
No 309
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.78 E-value=8.8e-08 Score=76.17 Aligned_cols=169 Identities=18% Similarity=0.181 Sum_probs=114.1
Q ss_pred eeeeecCCCccEEEecCCCCeeEEEEecCCeeeEEeecccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCC-----cE
Q 018248 139 LCDVSQNAGPMVMACPGLLKGQVRVEDYGTKKSKYITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDG-----SL 213 (359)
Q Consensus 139 ~~~~~~~~~~~~l~~~g~~d~~v~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~-----~~ 213 (359)
.++|+-+-.... ++.|. +-.+-+-+..+...+.+. .++.|.++.|...++++..|...|. |..+|++.+ .+
T Consensus 216 ~CawSlni~gyh-fs~G~-sqqv~L~nvetg~~qsf~-sksDVfAlQf~~s~nLv~~GcRnge-I~~iDLR~rnqG~~~~ 291 (425)
T KOG2695|consen 216 SCAWSLNIMGYH-FSVGL-SQQVLLTNVETGHQQSFQ-SKSDVFALQFAGSDNLVFNGCRNGE-IFVIDLRCRNQGNGWC 291 (425)
T ss_pred hhhhhhccceee-ecccc-cceeEEEEeecccccccc-cchhHHHHHhcccCCeeEecccCCc-EEEEEeeecccCCCcc
Confidence 446665444433 33244 445555444444444554 5778999999988999999999999 999999864 45
Q ss_pred EEEeecCCCCcceEEEEecC-CCCEEEEEcCCCcEEEEEccCCCCCCCCCccccCCCCCccCCCCCceeeeeEeeeecce
Q 018248 214 LQEMRRGAERAEIYSLAFSS-NAQWLAASSDKGTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSAISSFRFIRGVLPK 292 (359)
Q Consensus 214 ~~~~~~~~~~~~i~~~~~s~-~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (359)
...+. |.+.|+++..-. ++++|++.+.+|+|++||++..+... +
T Consensus 292 a~rly---h~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~---------------------~----------- 336 (425)
T KOG2695|consen 292 AQRLY---HDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKK---------------------S----------- 336 (425)
T ss_pred eEEEE---cCcchhhhhhhccccceEeeccCcCceeEeeehhhhccc---------------------c-----------
Confidence 55555 778999988766 78899999999999999998766321 0
Q ss_pred EEecccceeEEeecC--CcEEEeeecccCCEEEEEecCCeEEEEEeCCCCCCceEEeeeccccCCC
Q 018248 293 YFSSKWSMAQFRLPE--NVQYLVGFGRQNNTIVIVGLDGSYYKCEFDPMKGGEMHQLEHYKFLKPE 356 (359)
Q Consensus 293 ~~~~~~~~~~~~~~~--~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~~~~~~ 356 (359)
+.++..|- ..-.-+...+....|++++.|=..+||.++. |.....-...|..++
T Consensus 337 -------V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~---ghLl~tipf~~s~~e 392 (425)
T KOG2695|consen 337 -------VMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDS---GHLLCTIPFPYSASE 392 (425)
T ss_pred -------eeeeecccccccccccccccccceEEEccCeeEEEEEeccc---CceeeccCCCCcccc
Confidence 00111111 0111233456678899999999999999986 566555555555544
No 310
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=98.78 E-value=5.5e-06 Score=71.64 Aligned_cols=217 Identities=14% Similarity=0.195 Sum_probs=118.1
Q ss_pred CceEEEEEccCCCEEEEecCCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEECCCc
Q 018248 7 ITIHHLALNQDHGCFATGTETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDDHEN 86 (359)
Q Consensus 7 ~~v~~~~~s~~g~~l~~~~d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~ 86 (359)
.....++++|+|++++++++|...||.....+.. . .+.-....|.. .+..++.. ..++|.++.--+.
T Consensus 33 ~~p~~ls~npngr~v~V~g~geY~iyt~~~~r~k---~-----~G~g~~~vw~~-~n~yAv~~----~~~~I~I~kn~~~ 99 (443)
T PF04053_consen 33 IYPQSLSHNPNGRFVLVCGDGEYEIYTALAWRNK---A-----FGSGLSFVWSS-RNRYAVLE----SSSTIKIYKNFKN 99 (443)
T ss_dssp S--SEEEE-TTSSEEEEEETTEEEEEETTTTEEE---E-----EEE-SEEEE-T-SSEEEEE-----TTS-EEEEETTEE
T ss_pred cCCeeEEECCCCCEEEEEcCCEEEEEEccCCccc---c-----cCceeEEEEec-CccEEEEE----CCCeEEEEEcCcc
Confidence 3467899999999999988999999985433222 1 12223345655 34455544 3578999743333
Q ss_pred cEEeeeccCcceeEEEEecceeEEE--ecCeEEEEEcccceeeeeEeccCCCceeeeeecCCCccEEEecCCCCeeEEEE
Q 018248 87 RYLGELSFRSEVKNVRLRRDRIVVV--LNQKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAGPMVMACPGLLKGQVRVE 164 (359)
Q Consensus 87 ~~~~~~~~~~~v~~~~~~~~~~~~~--~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~v~~~ 164 (359)
+....++.+..+..+-. |.++. .++.|.+||..+++.+..+... ++..+.|+++++.+.+++ +..+.+.
T Consensus 100 ~~~k~i~~~~~~~~If~---G~LL~~~~~~~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~~g~~val~t----~~~i~il 170 (443)
T PF04053_consen 100 EVVKSIKLPFSVEKIFG---GNLLGVKSSDFICFYDWETGKLIRRIDVS--AVKYVIWSDDGELVALVT----KDSIYIL 170 (443)
T ss_dssp -TT-----SS-EEEEE----SSSEEEEETTEEEEE-TTT--EEEEESS---E-EEEEE-TTSSEEEEE-----S-SEEEE
T ss_pred ccceEEcCCcccceEEc---CcEEEEECCCCEEEEEhhHcceeeEEecC--CCcEEEEECCCCEEEEEe----CCeEEEE
Confidence 33334443333444433 66665 6677999999999999998754 367899999988755554 4567775
Q ss_pred ecCCe------------eeEEeecccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcEEEEeecCCCCcceEEEEec
Q 018248 165 DYGTK------------KSKYITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFS 232 (359)
Q Consensus 165 ~~~~~------------~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s 232 (359)
..+.. ....+..-...|.+.+|..+ .++-.+.. . |+-+ ..|+.- .+.. -..++.=+.+.
T Consensus 171 ~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d--~fiYtT~~-~-lkYl--~~Ge~~-~i~~--ld~~~yllgy~ 241 (443)
T PF04053_consen 171 KYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVED--CFIYTTSN-H-LKYL--VNGETG-IIAH--LDKPLYLLGYL 241 (443)
T ss_dssp EE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT--EEEEE-TT-E-EEEE--ETTEEE-EEEE---SS--EEEEEE
T ss_pred EecchhcccccccCchhceEEEEEecceeEEEEEEcC--EEEEEcCC-e-EEEE--EcCCcc-eEEE--cCCceEEEEEE
Confidence 55544 45555554678899999766 33333333 5 7663 344432 2221 12466777788
Q ss_pred CCCCEEEEEcCCCcEEEEEccC
Q 018248 233 SNAQWLAASSDKGTVHVFGLKV 254 (359)
Q Consensus 233 ~~~~~l~~~~~dg~i~iw~~~~ 254 (359)
|+.+.+.....|+.|..+.+..
T Consensus 242 ~~~~~ly~~Dr~~~v~~~~ld~ 263 (443)
T PF04053_consen 242 PKENRLYLIDRDGNVISYELDL 263 (443)
T ss_dssp TTTTEEEEE-TT--EEEEE--H
T ss_pred ccCCEEEEEECCCCEEEEEECH
Confidence 8778888888999898887764
No 311
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.76 E-value=5e-06 Score=77.02 Aligned_cols=232 Identities=13% Similarity=0.134 Sum_probs=129.2
Q ss_pred CCCceEEEEEccCCCEEEEec-CCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCC------CCCe
Q 018248 5 DPITIHHLALNQDHGCFATGT-ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPH------QSNK 77 (359)
Q Consensus 5 h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~------~d~~ 77 (359)
-.+.|.+++||||++.++..+ .+++.+ ...+...+..+.+. ...- ..+..+-++.|+. ..|.
T Consensus 108 vd~GI~aaswS~Dee~l~liT~~~tll~-mT~~f~~i~E~~L~---~d~~-------~~sk~v~VGwGrkeTqfrgs~gr 176 (1265)
T KOG1920|consen 108 VDNGISAASWSPDEELLALITGRQTLLF-MTKDFEPIAEKPLD---ADDE-------RKSKFVNVGWGRKETQFRGSEGR 176 (1265)
T ss_pred ccCceEEEeecCCCcEEEEEeCCcEEEE-Eeccccchhccccc---cccc-------cccccceecccccceeeecchhh
Confidence 357899999999999999888 455444 44434444333331 1100 0112222333220 1122
Q ss_pred EEEEECCCc-cEEeeeccCcceeEEEEecceeEEE-------ec-CeEEEEEcccceeeeeEeccCCCceeeeeecCCCc
Q 018248 78 VMIWDDHEN-RYLGELSFRSEVKNVRLRRDRIVVV-------LN-QKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAGP 148 (359)
Q Consensus 78 i~iwd~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~-------~d-~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (359)
...-+.... +.+......+.=.++.|--||++++ .+ ..|++||-+ |..-..-......-.+++|-|.|..
T Consensus 177 ~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV~drE-g~Lns~se~~~~l~~~LsWkPsgs~ 255 (1265)
T KOG1920|consen 177 QAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIRVYDRE-GALNSTSEPVEGLQHSLSWKPSGSL 255 (1265)
T ss_pred hcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCceeEEEeccc-chhhcccCcccccccceeecCCCCe
Confidence 222111110 1111111222334689999998887 34 799999975 5443333333444467888887654
Q ss_pred cEEEec--CCCCeeEEEEecCCeeeEE----eecccccccEEEEccCCcEEEE---EeCCCCeEEEEEcCCCcEE--EEe
Q 018248 149 MVMACP--GLLKGQVRVEDYGTKKSKY----ITAHASRIASIAMTLDGRFVAT---ASSKGTLIRVFNTMDGSLL--QEM 217 (359)
Q Consensus 149 ~~l~~~--g~~d~~v~~~~~~~~~~~~----~~~~~~~i~~~~~s~~~~~l~~---~~~dg~~i~iwd~~~~~~~--~~~ 217 (359)
+++. -..++.|.++..+|-.-.. +......+..++|+.++..||+ ...... |++|-+.+..-. +.+
T Consensus 256 --iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~-v~lwt~~NyhWYLKq~l 332 (1265)
T KOG1920|consen 256 --IAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDEKEVEELAWNSNSDILAVVTSNLENSL-VQLWTTGNYHWYLKQEL 332 (1265)
T ss_pred --EeeeeecCCCCcEEEEecCCccccccccCCcccccchheeeecCCCCceeeeecccccce-EEEEEecCeEEEEEEEE
Confidence 4432 2345678888877743322 2334445999999999999987 445555 999998775432 223
Q ss_pred ecCCCCcceEEEEecCCC-CEEEEEcCCCcEEEEEccCC
Q 018248 218 RRGAERAEIYSLAFSSNA-QWLAASSDKGTVHVFGLKVD 255 (359)
Q Consensus 218 ~~~~~~~~i~~~~~s~~~-~~l~~~~~dg~i~iw~~~~~ 255 (359)
.. ..... +.|+|-. ..|..-..+|...++++.-.
T Consensus 333 ~~--~~~~~--~~W~p~~~~~L~v~~~sG~~~v~~~~~~ 367 (1265)
T KOG1920|consen 333 QF--SQKAL--LMWDPVTEKTLHVLRESGQRLVRDFAWT 367 (1265)
T ss_pred ec--ccccc--ccccCCCceeEEEEecCCcEEEEEEEEe
Confidence 22 11122 8899843 23444447787777776543
No 312
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.75 E-value=4.8e-07 Score=74.63 Aligned_cols=278 Identities=14% Similarity=0.157 Sum_probs=168.8
Q ss_pred CCCceeEEEEeccCCEEEEEecCCCCCCeEEEEECCC--c-cEEeeec-cCcceeEEEEecceeEEE----ecCeEEEEE
Q 018248 49 PRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDDHE--N-RYLGELS-FRSEVKNVRLRRDRIVVV----LNQKVYVYN 120 (359)
Q Consensus 49 h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~~~--~-~~~~~~~-~~~~v~~~~~~~~~~~~~----~d~~i~i~d 120 (359)
|...+.-+.. .-.+.+..++ .||.++.|.-.. + +.+..+. |...|.+++.+-++.+.. .|..++++|
T Consensus 8 hrd~i~hv~~-tka~fiiqAS----lDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfD 82 (558)
T KOG0882|consen 8 HRDVITHVFP-TKAKFIIQAS----LDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFD 82 (558)
T ss_pred ccceeeeEee-ehhheEEeee----cchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEE
Confidence 5555544332 2235566666 789999998433 1 2222333 778899999999998887 389999999
Q ss_pred cccceeeeeEeccCCCceeeee-ecCCCccEEEecCCCCeeEEEEecCCe---eeEEeecccccccEEEEccCCcEEEEE
Q 018248 121 FTDLKLVDQIETVVNPTGLCDV-SQNAGPMVMACPGLLKGQVRVEDYGTK---KSKYITAHASRIASIAMTLDGRFVATA 196 (359)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~g~~d~~v~~~~~~~~---~~~~~~~~~~~i~~~~~s~~~~~l~~~ 196 (359)
+++-..+..++...-+-.+..+ ++......++.+...++.+.+.+..+. ....-.-|..+|.++.++|-+..+.+.
T Consensus 83 vEn~DminmiKL~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSi 162 (558)
T KOG0882|consen 83 VENFDMINMIKLVDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSI 162 (558)
T ss_pred eeccchhhhcccccCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeec
Confidence 9876655444433322222222 222223345555566788888665542 233345689999999999999999999
Q ss_pred eCCCCeEEEEEcCC------CcEEEEeec-------CCCCcceEEEEecCCCCEEEEEcCCCcEEEEEccCCCCCCCCCc
Q 018248 197 SSKGTLIRVFNTMD------GSLLQEMRR-------GAERAEIYSLAFSSNAQWLAASSDKGTVHVFGLKVDSGSPGTSK 263 (359)
Q Consensus 197 ~~dg~~i~iwd~~~------~~~~~~~~~-------~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~ 263 (359)
...|. |.-|.... .+....++. ....+...++.|+|+|..+.+-+.|..|+++++++++.....+.
T Consensus 163 D~~gm-VEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE 241 (558)
T KOG0882|consen 163 DISGM-VEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDE 241 (558)
T ss_pred cccce-eEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhhhc
Confidence 98999 99998752 111111110 01345778999999999999999999999999999885543322
Q ss_pred ccc-CCCCCccCCCCCceeeeeEeeeecceEEecccceeEEeecC-CcEEEeeecccCCEEEEEecCCeEEEEEeCCCCC
Q 018248 264 LHS-ASEPNLSSKNSSAISSFRFIRGVLPKYFSSKWSMAQFRLPE-NVQYLVGFGRQNNTIVIVGLDGSYYKCEFDPMKG 341 (359)
Q Consensus 264 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~ 341 (359)
..+ ....+... ..+...-+.+-...++. +..+. -.-..+.|...+++|+.|+-=| |.|.+++.
T Consensus 242 ~~t~~~~q~ks~--------y~l~~VelgRRmavere---lek~~~~~~~~~~fdes~~flly~t~~g-ikvin~~t--- 306 (558)
T KOG0882|consen 242 VLTDAQYQPKSP--------YGLMHVELGRRMAVERE---LEKHGSTVGTNAVFDESGNFLLYGTILG-IKVINLDT--- 306 (558)
T ss_pred cchhhhhccccc--------cccceeehhhhhhHHhh---HhhhcCcccceeEEcCCCCEEEeeccee-EEEEEeec---
Confidence 211 11111110 00000000000000111 11111 1224578899999999999887 88888887
Q ss_pred CceEEe
Q 018248 342 GEMHQL 347 (359)
Q Consensus 342 ~~~~~~ 347 (359)
+.+.++
T Consensus 307 n~v~ri 312 (558)
T KOG0882|consen 307 NTVVRI 312 (558)
T ss_pred CeEEEE
Confidence 455443
No 313
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.72 E-value=1.6e-07 Score=83.92 Aligned_cols=174 Identities=15% Similarity=0.178 Sum_probs=121.4
Q ss_pred ecCeEEEEEcccceeeeeEeccCCCceeeeeecCCCccEEEecCCCCeeEEE-EecCCeeeEEeecccccccEEEEccCC
Q 018248 112 LNQKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAGPMVMACPGLLKGQVRV-EDYGTKKSKYITAHASRIASIAMTLDG 190 (359)
Q Consensus 112 ~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~v~~-~~~~~~~~~~~~~~~~~i~~~~~s~~~ 190 (359)
.-..+..+|+++.+..+........+..+ ..+++ ++.+ |...|+|.+ +..+.+.++++.+|.+.|..+.. .|
T Consensus 155 ~Q~~li~~Dl~~~~e~r~~~v~a~~v~im--R~Nnr--~lf~-G~t~G~V~LrD~~s~~~iht~~aHs~siSDfDv--~G 227 (1118)
T KOG1275|consen 155 LQEKLIHIDLNTEKETRTTNVSASGVTIM--RYNNR--NLFC-GDTRGTVFLRDPNSFETIHTFDAHSGSISDFDV--QG 227 (1118)
T ss_pred hhhheeeeecccceeeeeeeccCCceEEE--EecCc--EEEe-ecccceEEeecCCcCceeeeeeccccceeeeec--cC
Confidence 45667788988887776665544444433 33443 3555 888999999 65666899999999999887655 68
Q ss_pred cEEEEEeC---------CCCeEEEEEcCCCcEEEEeecCCCCcceEEEEecCC-CCEEEEEcCCCcEEEEEccCCCCCCC
Q 018248 191 RFVATASS---------KGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSN-AQWLAASSDKGTVHVFGLKVDSGSPG 260 (359)
Q Consensus 191 ~~l~~~~~---------dg~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~-~~~l~~~~~dg~i~iw~~~~~~~~~~ 260 (359)
+.|++++. |.. |+|||+++.+.+.-+... ....-+.|.|. ...+++++..|...+-|..+-...+
T Consensus 228 NlLitCG~S~R~~~l~~D~F-vkVYDLRmmral~PI~~~---~~P~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~- 302 (1118)
T KOG1275|consen 228 NLLITCGYSMRRYNLAMDPF-VKVYDLRMMRALSPIQFP---YGPQFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPP- 302 (1118)
T ss_pred CeEEEeecccccccccccch-hhhhhhhhhhccCCcccc---cCchhhhhcccccceEEEEecccceeeccccccCCCc-
Confidence 88888875 445 899999988776655432 12245667774 3467888889999998844332110
Q ss_pred CCccccCCCCCccCCCCCceeeeeEeeeecceEEecccceeEEeecC-CcEEEeeecccCCEEEEEecCCeEEEEE
Q 018248 261 TSKLHSASEPNLSSKNSSAISSFRFIRGVLPKYFSSKWSMAQFRLPE-NVQYLVGFGRQNNTIVIVGLDGSYYKCE 335 (359)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~~~~~dg~i~v~~ 335 (359)
. -..+. .|. ..+....+|++++.|+.|..+|.|.+|.
T Consensus 303 -------------------~---------~~~~v----------~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 303 -------------------A---------GVKMV----------NPNGSGISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred -------------------c---------ceeEE----------ccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence 0 00011 122 2378899999999999999999999997
No 314
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.72 E-value=6e-07 Score=72.92 Aligned_cols=157 Identities=12% Similarity=0.060 Sum_probs=102.3
Q ss_pred eEEEEEccCCCEEEEec-CCceEEEEcCCCcc--eeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEECCC
Q 018248 9 IHHLALNQDHGCFATGT-ETGFRVYLSDPYKP--IMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDDHE 85 (359)
Q Consensus 9 v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~--~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~~~ 85 (359)
+..+..++++++||++. ++...++++....+ .+..... ....+-.+.....+...++....+ ....+.+|....
T Consensus 65 ~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~-v~~~~~ai~~~~~~~sv~v~dkag--D~~~~di~s~~~ 141 (390)
T KOG3914|consen 65 PALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSC-VPKRPTAISFIREDTSVLVADKAG--DVYSFDILSADS 141 (390)
T ss_pred ccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEee-cccCcceeeeeeccceEEEEeecC--Cceeeeeecccc
Confidence 34556778999999998 67766777653322 1111110 112222222222333344444433 467788888777
Q ss_pred ccEEeeeccCcceeEEEEecceeEEE---ecCeEEEEEcccceeeeeE-eccCCCceeeeeecCCCccEEEecCCCCeeE
Q 018248 86 NRYLGELSFRSEVKNVRLRRDRIVVV---LNQKVYVYNFTDLKLVDQI-ETVVNPTGLCDVSQNAGPMVMACPGLLKGQV 161 (359)
Q Consensus 86 ~~~~~~~~~~~~v~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~v 161 (359)
+.+...+.|-..+.+++++||+++++ .|..|++-.....-.+..+ -+|..-|..+++.++.. |++ |+.|+++
T Consensus 142 ~~~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~~~---LlS-~sGD~tl 217 (390)
T KOG3914|consen 142 GRCEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDNYL---LLS-GSGDKTL 217 (390)
T ss_pred cCcchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccCce---eee-cCCCCcE
Confidence 88888888999999999999999888 7889999777554445554 45888888888766542 555 6679999
Q ss_pred EEEecCC-eeeE
Q 018248 162 RVEDYGT-KKSK 172 (359)
Q Consensus 162 ~~~~~~~-~~~~ 172 (359)
++|+... +.+.
T Consensus 218 r~Wd~~sgk~L~ 229 (390)
T KOG3914|consen 218 RLWDITSGKLLD 229 (390)
T ss_pred EEEecccCCccc
Confidence 9999865 4443
No 315
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=98.67 E-value=2.4e-06 Score=73.59 Aligned_cols=188 Identities=12% Similarity=0.090 Sum_probs=123.6
Q ss_pred CceeEEEEeccCCEEEEEecCCCCC-CeEEEEECCCccEEeeeccCcceeEEEEecceeEEE----ecC--eEEEEEccc
Q 018248 51 GGTQLVSMLFRSNIICLVNSGPHQS-NKVMIWDDHENRYLGELSFRSEVKNVRLRRDRIVVV----LNQ--KVYVYNFTD 123 (359)
Q Consensus 51 ~~v~~~~~~~~~~~~~~~~~~~~~d-~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~----~d~--~i~i~d~~~ 123 (359)
..+..-+|++++..++.+.-.. .. ..+.++++.+++........+.-..-+|+|||+.++ .|+ .|+++|+..
T Consensus 193 ~~~~~p~ws~~~~~~~y~~f~~-~~~~~i~~~~l~~g~~~~i~~~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~ 271 (425)
T COG0823 193 SLILTPAWSPDGKKLAYVSFEL-GGCPRIYYLDLNTGKRPVILNFNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDG 271 (425)
T ss_pred cceeccccCcCCCceEEEEEec-CCCceEEEEeccCCccceeeccCCccCCccCCCCCCEEEEEECCCCCccEEEEcCCC
Confidence 3344456777777766554322 22 469999999998877777777777889999998887 344 677788866
Q ss_pred ceeeeeEeccCCCceeeeeecCCCccEEEecCCCCeeEEE--EecCCeeeEEeecccccccEEEEccCCcEEEEEeCCCC
Q 018248 124 LKLVDQIETVVNPTGLCDVSQNAGPMVMACPGLLKGQVRV--EDYGTKKSKYITAHASRIASIAMTLDGRFVATASSKGT 201 (359)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~v~~--~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~ 201 (359)
++ ...+....+.-..-.|+|+++.+++++ +..|.-.| .+.++.....+......-....|+|||++|+..+..+.
T Consensus 272 ~~-~~~Lt~~~gi~~~Ps~spdG~~ivf~S--dr~G~p~I~~~~~~g~~~~riT~~~~~~~~p~~SpdG~~i~~~~~~~g 348 (425)
T COG0823 272 KN-LPRLTNGFGINTSPSWSPDGSKIVFTS--DRGGRPQIYLYDLEGSQVTRLTFSGGGNSNPVWSPDGDKIVFESSSGG 348 (425)
T ss_pred Cc-ceecccCCccccCccCCCCCCEEEEEe--CCCCCcceEEECCCCCceeEeeccCCCCcCccCCCCCCEEEEEeccCC
Confidence 55 333544444444678999999866654 34454444 56666666666555444447889999999987774321
Q ss_pred --eEEEEEcCCCcEEEEeecCCCCcceEEEEecCCCCEEEEEcCCC
Q 018248 202 --LIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSNAQWLAASSDKG 245 (359)
Q Consensus 202 --~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg 245 (359)
.|.+.|+.++...+.+.. ......-.|.++|+.+...+..+
T Consensus 349 ~~~i~~~~~~~~~~~~~lt~---~~~~e~ps~~~ng~~i~~~s~~~ 391 (425)
T COG0823 349 QWDIDKNDLASGGKIRILTS---TYLNESPSWAPNGRMIMFSSGQG 391 (425)
T ss_pred ceeeEEeccCCCCcEEEccc---cccCCCCCcCCCCceEEEeccCC
Confidence 166777766665555542 23445667888998877665443
No 316
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.64 E-value=1.4e-05 Score=71.61 Aligned_cols=197 Identities=14% Similarity=0.136 Sum_probs=127.0
Q ss_pred EEccCCCEEEEec-CCceEEEEcCCCcceeeeecccCCCCc-eeEEEEeccCCEEEEEecCCCCCC-eEEEEECCCc---
Q 018248 13 ALNQDHGCFATGT-ETGFRVYLSDPYKPIMRRDFDRNPRGG-TQLVSMLFRSNIICLVNSGPHQSN-KVMIWDDHEN--- 86 (359)
Q Consensus 13 ~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~h~~~-v~~~~~~~~~~~~~~~~~~~~~d~-~i~iwd~~~~--- 86 (359)
+|++.+..++.|+ +|.|.+.+-. ......+. ++... +..+......+.++.++.+...+. .++||+++.-
T Consensus 30 c~~s~~~~vvigt~~G~V~~Ln~s---~~~~~~fq-a~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n 105 (933)
T KOG2114|consen 30 CCSSSTGSVVIGTADGRVVILNSS---FQLIRGFQ-AYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKN 105 (933)
T ss_pred EEcCCCceEEEeeccccEEEeccc---ceeeehhe-ecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCC
Confidence 4678899999999 9998888754 22224443 34444 444444444456666664321122 6999997542
Q ss_pred ---cEE---eeec-----cCcceeEEEEecceeEEE---ecCeEEEEEc----ccceeeeeEeccCCCceeeeeecCCCc
Q 018248 87 ---RYL---GELS-----FRSEVKNVRLRRDRIVVV---LNQKVYVYNF----TDLKLVDQIETVVNPTGLCDVSQNAGP 148 (359)
Q Consensus 87 ---~~~---~~~~-----~~~~v~~~~~~~~~~~~~---~d~~i~i~d~----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (359)
+++ +.+. .+.++.+++.+.+-+.++ .+|.|..+.- ..+...........+++.+++..++..
T Consensus 106 ~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s 185 (933)
T KOG2114|consen 106 NSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKS 185 (933)
T ss_pred CCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCce
Confidence 233 2222 246788899998877776 8999988853 122222333345678889999888887
Q ss_pred cEEEecCCCCeeEEEEecCCee--eEEeecccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcEEEEee
Q 018248 149 MVMACPGLLKGQVRVEDYGTKK--SKYITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMR 218 (359)
Q Consensus 149 ~~l~~~g~~d~~v~~~~~~~~~--~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~~~~~~ 218 (359)
.+++++ ...|.++...++. ...+..|...++|..+++....+++++... +.+|+....++-..+.
T Consensus 186 ~lFv~T---t~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~~e~--l~fY~sd~~~~cfaf~ 252 (933)
T KOG2114|consen 186 VLFVAT---TEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAGSEF--LYFYDSDGRGPCFAFE 252 (933)
T ss_pred eEEEEe---cceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEecCce--EEEEcCCCcceeeeec
Confidence 544442 4567887777766 555777888999999987666566666554 8999976555555555
No 317
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.60 E-value=7.1e-05 Score=66.22 Aligned_cols=185 Identities=12% Similarity=0.069 Sum_probs=109.3
Q ss_pred ecCeEEEEEcccceeeeeEeccCCCceeeeeecCCCccEEEecCCCCe-eEEEEec-CCeeeEEeecccccccEEEEccC
Q 018248 112 LNQKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAGPMVMACPGLLKG-QVRVEDY-GTKKSKYITAHASRIASIAMTLD 189 (359)
Q Consensus 112 ~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~-~v~~~~~-~~~~~~~~~~~~~~i~~~~~s~~ 189 (359)
..+.+.+.|..+.+...++.....+ ..++++++++..++.+..++.+ .+..-+. +......+.. ..+ -++.++
T Consensus 213 y~~~vSvID~etmeV~~qV~Vdgnp-d~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni--~~i--ea~vkd 287 (635)
T PRK02888 213 YRSLFTAVDAETMEVAWQVMVDGNL-DNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNI--ARI--EEAVKA 287 (635)
T ss_pred eeEEEEEEECccceEEEEEEeCCCc-ccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEch--HHH--HHhhhC
Confidence 4567778888887777777665533 4578888887644433112222 1111111 1111111110 001 133457
Q ss_pred CcEEEEEeCCCCeEEEEEcCC-----CcEEEEeecCCCCcceEEEEecCCCCEEEEEc-CCCcEEEEEccCCCCCCCCCc
Q 018248 190 GRFVATASSKGTLIRVFNTMD-----GSLLQEMRRGAERAEIYSLAFSSNAQWLAASS-DKGTVHVFGLKVDSGSPGTSK 263 (359)
Q Consensus 190 ~~~l~~~~~dg~~i~iwd~~~-----~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~dg~i~iw~~~~~~~~~~~~~ 263 (359)
|++...+ ++. |.+.|.++ .+.+..+.. ......+.+||||+++++++ .+.+|.|.|+.+.+..-
T Consensus 288 GK~~~V~--gn~-V~VID~~t~~~~~~~v~~yIPV---GKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~---- 357 (635)
T PRK02888 288 GKFKTIG--GSK-VPVVDGRKAANAGSALTRYVPV---PKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLF---- 357 (635)
T ss_pred CCEEEEC--CCE-EEEEECCccccCCcceEEEEEC---CCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhh----
Confidence 8876653 556 99999988 456666664 35778999999999887766 58899999999866310
Q ss_pred cccCCCCCccCCCCCceeeeeEeeeecceEEecccceeEEeecCCcEEEeeecccCCEEEEEecCCeEEEEEeCC
Q 018248 264 LHSASEPNLSSKNSSAISSFRFIRGVLPKYFSSKWSMAQFRLPENVQYLVGFGRQNNTIVIVGLDGSYYKCEFDP 338 (359)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~ 338 (359)
...+.+-.. ..++.++-.++. -.+|.++|+...+.-.|..|..|+++.
T Consensus 358 ----------------~~~~~~~~~----------vvaevevGlGPL-HTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 358 ----------------DGKIKPRDA----------VVAEPELGLGPL-HTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred ----------------hccCCccce----------EEEeeccCCCcc-eEEECCCCCEEEeEeecceeEEEehHH
Confidence 000000000 011122222333 468999998888888899999999876
No 318
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.59 E-value=4.6e-08 Score=87.15 Aligned_cols=210 Identities=12% Similarity=0.114 Sum_probs=144.5
Q ss_pred CCCCceEEEEEccCCCEEEEec-CCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEE
Q 018248 4 PDPITIHHLALNQDHGCFATGT-ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWD 82 (359)
Q Consensus 4 ~h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd 82 (359)
.|...-+|++|+-+.++|++|+ .|.|++|++.++..... .. +|...++.+.-+-++...++.+... ..-..+|+
T Consensus 1099 d~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s--~n-cH~SavT~vePs~dgs~~Ltsss~S--~PlsaLW~ 1173 (1516)
T KOG1832|consen 1099 DETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEES--VN-CHQSAVTLVEPSVDGSTQLTSSSSS--SPLSALWD 1173 (1516)
T ss_pred ccccceeeEEeecCCceEEeeeccceEEEEEccCcccccc--cc-ccccccccccccCCcceeeeecccc--CchHHHhc
Confidence 4667889999999999999999 99999999998876633 33 7999999999888888887777553 24678898
Q ss_pred CCC-ccEEeeeccCcceeEEEEecceeEEE---ecCeEEEEEcccceeeeeEec----cCCCceeeeeecCCCccEEEec
Q 018248 83 DHE-NRYLGELSFRSEVKNVRLRRDRIVVV---LNQKVYVYNFTDLKLVDQIET----VVNPTGLCDVSQNAGPMVMACP 154 (359)
Q Consensus 83 ~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~l~~~ 154 (359)
... +...+.+. .-.++.|+...+.-+ ......+||++++.++.++-. ....-++..|+|+.+ |+.
T Consensus 1174 ~~s~~~~~Hsf~---ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~---LIl- 1246 (1516)
T KOG1832|consen 1174 ASSTGGPRHSFD---EDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDT---LIL- 1246 (1516)
T ss_pred cccccCcccccc---ccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcc---eEe-
Confidence 654 44444443 334677776543322 556789999999887766321 112235678888876 333
Q ss_pred CCCCeeEEEEecCC-eeeEEeecccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcEEEEeecCCCCcceEEEEecC
Q 018248 155 GLLKGQVRVEDYGT-KKSKYITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSS 233 (359)
Q Consensus 155 g~~d~~v~~~~~~~-~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~ 233 (359)
.|| .+|+.+. ..++.|...... ..-.|+|.|..++.- -.|||+++.+.++....- .-..+.|+.
T Consensus 1247 --ndG--vLWDvR~~~aIh~FD~ft~~-~~G~FHP~g~eVIIN------SEIwD~RTF~lLh~VP~L----dqc~VtFNs 1311 (1516)
T KOG1832|consen 1247 --NDG--VLWDVRIPEAIHRFDQFTDY-GGGGFHPSGNEVIIN------SEIWDMRTFKLLHSVPSL----DQCAVTFNS 1311 (1516)
T ss_pred --eCc--eeeeeccHHHHhhhhhheec-ccccccCCCceEEee------chhhhhHHHHHHhcCccc----cceEEEecc
Confidence 366 3477765 334444433322 233589999987653 368999999988777641 336788888
Q ss_pred CCCEEEE
Q 018248 234 NAQWLAA 240 (359)
Q Consensus 234 ~~~~l~~ 240 (359)
.|..+..
T Consensus 1312 tG~VmYa 1318 (1516)
T KOG1832|consen 1312 TGDVMYA 1318 (1516)
T ss_pred Cccchhh
Confidence 8887654
No 319
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.59 E-value=4.1e-07 Score=72.47 Aligned_cols=138 Identities=11% Similarity=0.145 Sum_probs=99.1
Q ss_pred ecCeEEEEEcccceeeeeEeccCCCceeeeeecCCCccEEEecCCCCeeEEEEecCCe------eeEEeecccccccEEE
Q 018248 112 LNQKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAGPMVMACPGLLKGQVRVEDYGTK------KSKYITAHASRIASIA 185 (359)
Q Consensus 112 ~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~v~~~~~~~~------~~~~~~~~~~~i~~~~ 185 (359)
.+..|-+-|++++-. +.+. ....|....|...++ ++.. |..+|.|...+.+.+ +... --|...|+++.
T Consensus 232 ~sqqv~L~nvetg~~-qsf~-sksDVfAlQf~~s~n--Lv~~-GcRngeI~~iDLR~rnqG~~~~a~r-lyh~Ssvtslq 305 (425)
T KOG2695|consen 232 LSQQVLLTNVETGHQ-QSFQ-SKSDVFALQFAGSDN--LVFN-GCRNGEIFVIDLRCRNQGNGWCAQR-LYHDSSVTSLQ 305 (425)
T ss_pred ccceeEEEEeecccc-cccc-cchhHHHHHhcccCC--eeEe-cccCCcEEEEEeeecccCCCcceEE-EEcCcchhhhh
Confidence 566777788776633 2333 345555566655443 3444 888999988555432 2233 34888999998
Q ss_pred Ecc-CCcEEEEEeCCCCeEEEEEcCCCcE---EEEeecCCCCcceEEEEecCCCCEEEEEcCCCcEEEEEccCCC
Q 018248 186 MTL-DGRFVATASSKGTLIRVFNTMDGSL---LQEMRRGAERAEIYSLAFSSNAQWLAASSDKGTVHVFGLKVDS 256 (359)
Q Consensus 186 ~s~-~~~~l~~~~~dg~~i~iwd~~~~~~---~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~ 256 (359)
.-. ++++|++.+.+|. |++||.+.-++ +.++++|.....-.-+...+....++++++|...|||.++.+.
T Consensus 306 ~Lq~s~q~LmaS~M~gk-ikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~gh 379 (425)
T KOG2695|consen 306 ILQFSQQKLMASDMTGK-IKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGH 379 (425)
T ss_pred hhccccceEeeccCcCc-eeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccCc
Confidence 776 7889999999999 99999987776 8888885544444455566777889999999999999999876
No 320
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=98.57 E-value=0.00026 Score=59.63 Aligned_cols=173 Identities=11% Similarity=0.161 Sum_probs=105.9
Q ss_pred CeEEEEECCCccEEeeec--cCcceeEEEE---ecc----eeEEE------------ec-CeEEEEEcccc----eeeee
Q 018248 76 NKVMIWDDHENRYLGELS--FRSEVKNVRL---RRD----RIVVV------------LN-QKVYVYNFTDL----KLVDQ 129 (359)
Q Consensus 76 ~~i~iwd~~~~~~~~~~~--~~~~v~~~~~---~~~----~~~~~------------~d-~~i~i~d~~~~----~~~~~ 129 (359)
..|++.|..+.+.+..+. ....+.+++. ..+ ..+++ .. |.|.++++... ..+..
T Consensus 2 s~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~ 81 (321)
T PF03178_consen 2 SSIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKL 81 (321)
T ss_dssp -EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEE
T ss_pred cEEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEE
Confidence 468899988888887776 4455555543 321 34444 12 89999999773 22222
Q ss_pred E--eccCCCceeeeeecCCCccEEEecCCCCeeEEEEecCCee-eEEeecccccccEEEEccCCcEEEEEeCCCCeEEEE
Q 018248 130 I--ETVVNPTGLCDVSQNAGPMVMACPGLLKGQVRVEDYGTKK-SKYITAHASRIASIAMTLDGRFVATASSKGTLIRVF 206 (359)
Q Consensus 130 ~--~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~v~~~~~~~~~-~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iw 206 (359)
+ ....+++. ++.+-++. ++++. .+.|.++...... +.....+..++...+....++++++|..... +.++
T Consensus 82 i~~~~~~g~V~--ai~~~~~~-lv~~~---g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~~~~I~vgD~~~s-v~~~ 154 (321)
T PF03178_consen 82 IHSTEVKGPVT--AICSFNGR-LVVAV---GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVFKNYILVGDAMKS-VSLL 154 (321)
T ss_dssp EEEEEESS-EE--EEEEETTE-EEEEE---TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEETTEEEEEESSSS-EEEE
T ss_pred EEEEeecCcce--EhhhhCCE-EEEee---cCEEEEEEccCcccchhhheecceEEEEEEeccccEEEEEEcccC-EEEE
Confidence 2 12344444 44444444 44443 4688886665554 5554445454555555556779999998888 8887
Q ss_pred EcCC-CcEEEEeecCCCCcceEEEEecCCCCEEEEEcCCCcEEEEEccCC
Q 018248 207 NTMD-GSLLQEMRRGAERAEIYSLAFSSNAQWLAASSDKGTVHVFGLKVD 255 (359)
Q Consensus 207 d~~~-~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~ 255 (359)
.... ...+..+.....+..++++.+-++++.++.+..+|.+.++.....
T Consensus 155 ~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~~ 204 (321)
T PF03178_consen 155 RYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNPE 204 (321)
T ss_dssp EEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-SS
T ss_pred EEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECCC
Confidence 5543 343444444334567899999877779999999999999999753
No 321
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.55 E-value=7.5e-06 Score=70.43 Aligned_cols=76 Identities=14% Similarity=0.267 Sum_probs=64.1
Q ss_pred cccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcEEEEeecCCCCcceEEEEecCCCCEEEEEcCCCcEEEEEccCC
Q 018248 176 AHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSNAQWLAASSDKGTVHVFGLKVD 255 (359)
Q Consensus 176 ~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~ 255 (359)
.....+.+++++|+...|+.|+.||. |.+||...+..... + ..-.++.++|+|+|.++++|+..|.+.+||+.-.
T Consensus 257 pL~s~v~~ca~sp~E~kLvlGC~DgS-iiLyD~~~~~t~~~-k---a~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALs 331 (545)
T PF11768_consen 257 PLPSQVICCARSPSEDKLVLGCEDGS-IILYDTTRGVTLLA-K---AEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALS 331 (545)
T ss_pred ecCCcceEEecCcccceEEEEecCCe-EEEEEcCCCeeeee-e---ecccceEEEEcCCCcEEEEEcCCceEEEEEeecC
Confidence 46778999999999999999999999 99999866643322 2 2346789999999999999999999999999765
Q ss_pred C
Q 018248 256 S 256 (359)
Q Consensus 256 ~ 256 (359)
.
T Consensus 332 p 332 (545)
T PF11768_consen 332 P 332 (545)
T ss_pred c
Confidence 4
No 322
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=98.51 E-value=0.00038 Score=57.37 Aligned_cols=221 Identities=12% Similarity=0.088 Sum_probs=126.3
Q ss_pred ccCCEEEEEecCCCCCCeEEEEECCCccEEeeeccCcceeEE-EEecceeEEEecCeEEEEEcccceeeeeEecc-----
Q 018248 60 FRSNIICLVNSGPHQSNKVMIWDDHENRYLGELSFRSEVKNV-RLRRDRIVVVLNQKVYVYNFTDLKLVDQIETV----- 133 (359)
Q Consensus 60 ~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~-~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~----- 133 (359)
+..+.++++.- ..+.|.-|+..+++.. .+..++.+.++ .....+.+++.+..+.+++..++..+..+...
T Consensus 34 ~~~~~L~w~DI---~~~~i~r~~~~~g~~~-~~~~p~~~~~~~~~d~~g~Lv~~~~g~~~~~~~~~~~~t~~~~~~~~~~ 109 (307)
T COG3386 34 PDRGALLWVDI---LGGRIHRLDPETGKKR-VFPSPGGFSSGALIDAGGRLIACEHGVRLLDPDTGGKITLLAEPEDGLP 109 (307)
T ss_pred CCCCEEEEEeC---CCCeEEEecCCcCceE-EEECCCCcccceeecCCCeEEEEccccEEEeccCCceeEEeccccCCCC
Confidence 34454555544 3588888887655433 33434444444 45556677778888888887655553333211
Q ss_pred CCCceeeeeecCCCccEEEecC---------CCCeeEEEEecCCeeeEEeecccccccEEEEccCCcEEEEEeCCCCeEE
Q 018248 134 VNPTGLCDVSQNAGPMVMACPG---------LLKGQVRVEDYGTKKSKYITAHASRIASIAMTLDGRFVATASSKGTLIR 204 (359)
Q Consensus 134 ~~~~~~~~~~~~~~~~~l~~~g---------~~d~~v~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~ 204 (359)
....+...+.|++. +++...+ ..-|.++..+..+...+.+..+-..-+.++||||++.|..+......|.
T Consensus 110 ~~r~ND~~v~pdG~-~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~ 188 (307)
T COG3386 110 LNRPNDGVVDPDGR-IWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIH 188 (307)
T ss_pred cCCCCceeEcCCCC-EEEeCCCccccCccccCCcceEEEEcCCCCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEE
Confidence 12234456666654 2222222 1124344444345666666666667789999999998887766533277
Q ss_pred EEEcCC--Cc---EEEEeecCCCCcceEEEEecCCCCEEEEEcCCC-cEEEEEccCCCCCCCCCccccCCCCCccCCCCC
Q 018248 205 VFNTMD--GS---LLQEMRRGAERAEIYSLAFSSNAQWLAASSDKG-TVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSS 278 (359)
Q Consensus 205 iwd~~~--~~---~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (359)
-|++.. +. ....+......+..-.++...+|.+.+++...| .|.+|+.+ ++.
T Consensus 189 r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l--------------------- 246 (307)
T COG3386 189 RYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKL--------------------- 246 (307)
T ss_pred EEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcE---------------------
Confidence 776642 11 111111111345566777777887775544444 78888877 441
Q ss_pred ceeeeeEeeeecceEEecccceeEEeecCCcEEEeee-cccCCEEEEEecC
Q 018248 279 AISSFRFIRGVLPKYFSSKWSMAQFRLPENVQYLVGF-GRQNNTIVIVGLD 328 (359)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-s~~~~~l~~~~~d 328 (359)
...+++|...+++++| .|+.+.|++.+..
T Consensus 247 ---------------------~~~i~lP~~~~t~~~FgG~~~~~L~iTs~~ 276 (307)
T COG3386 247 ---------------------LGEIKLPVKRPTNPAFGGPDLNTLYITSAR 276 (307)
T ss_pred ---------------------EEEEECCCCCCccceEeCCCcCEEEEEecC
Confidence 2235566567778888 4566777776663
No 323
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=98.50 E-value=0.00044 Score=57.81 Aligned_cols=219 Identities=11% Similarity=-0.008 Sum_probs=107.3
Q ss_pred EEccCCCEEEEec--CCc--eEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEECCCccE
Q 018248 13 ALNQDHGCFATGT--ETG--FRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDDHENRY 88 (359)
Q Consensus 13 ~~s~~g~~l~~~~--d~~--i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~ 88 (359)
+|.+||+.|+.++ ++. +.+.|+++++....... .........+++..+.++.+. ....|+-.|+.+.+.
T Consensus 42 ~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg---~g~~~~g~~~s~~~~~~~Yv~----~~~~l~~vdL~T~e~ 114 (386)
T PF14583_consen 42 CFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDG---PGDNTFGGFLSPDDRALYYVK----NGRSLRRVDLDTLEE 114 (386)
T ss_dssp -B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---S---S-B-TTT-EE-TTSSEEEEEE----TTTEEEEEETTT--E
T ss_pred CcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccC---CCCCccceEEecCCCeEEEEE----CCCeEEEEECCcCcE
Confidence 5788998876665 555 55666666544332221 112222355667778877776 347899999999887
Q ss_pred Eeeec-cCcceeEEEE--ecceeEEE-------------------------ecCeEEEEEcccceeeeeEeccCCCceee
Q 018248 89 LGELS-FRSEVKNVRL--RRDRIVVV-------------------------LNQKVYVYNFTDLKLVDQIETVVNPTGLC 140 (359)
Q Consensus 89 ~~~~~-~~~~v~~~~~--~~~~~~~~-------------------------~d~~i~i~d~~~~~~~~~~~~~~~~~~~~ 140 (359)
...+. .+.-+-...| +.++..++ ....|.-.|+.+|+....+. ......-+
T Consensus 115 ~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~-~~~wlgH~ 193 (386)
T PF14583_consen 115 RVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFE-DTDWLGHV 193 (386)
T ss_dssp EEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEE-ESS-EEEE
T ss_pred EEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEe-cCccccCc
Confidence 66666 3333333444 34555554 12467777888887655554 34455677
Q ss_pred eeecCCCccEEEe-cCCCCee-EEEEec--CCeeeEEeecccc--cccEEEEccCCcEEEEEeC-----CCCeEEEEEcC
Q 018248 141 DVSQNAGPMVMAC-PGLLKGQ-VRVEDY--GTKKSKYITAHAS--RIASIAMTLDGRFVATASS-----KGTLIRVFNTM 209 (359)
Q Consensus 141 ~~~~~~~~~~l~~-~g~~d~~-v~~~~~--~~~~~~~~~~~~~--~i~~~~~s~~~~~l~~~~~-----dg~~i~iwd~~ 209 (359)
.++|.....+..| -|..+.. -+||.. ++...+.+..+.. .+.-=-|.|||..|..-+. +.. |.-+|..
T Consensus 194 ~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~-i~~~d~~ 272 (386)
T PF14583_consen 194 QFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFW-IAGYDPD 272 (386)
T ss_dssp EEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEEEEEETTT--EE-EEEE-TT
T ss_pred ccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEEEeecCCCCceE-EEeeCCC
Confidence 8888776654443 1222321 255544 4444554443322 2333468899986654332 334 6677888
Q ss_pred CCcEEEEeecCCCCcceEEEEecCCCCEEEEEcCC
Q 018248 210 DGSLLQEMRRGAERAEIYSLAFSSNAQWLAASSDK 244 (359)
Q Consensus 210 ~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d 244 (359)
+++....... .....+--++||++++-=+.|
T Consensus 273 t~~~~~~~~~----p~~~H~~ss~Dg~L~vGDG~d 303 (386)
T PF14583_consen 273 TGERRRLMEM----PWCSHFMSSPDGKLFVGDGGD 303 (386)
T ss_dssp T--EEEEEEE-----SEEEEEE-TTSSEEEEEE--
T ss_pred CCCceEEEeC----CceeeeEEcCCCCEEEecCCC
Confidence 8765433322 234566678899988754443
No 324
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.49 E-value=1.5e-06 Score=76.33 Aligned_cols=198 Identities=18% Similarity=0.170 Sum_probs=135.0
Q ss_pred CCceeEEEEeccCCEEEEEecCCCCCCeEEEEECCC-ccEEeeec--cCcceeEEEEecce---eEEE--ecCeEEEEEc
Q 018248 50 RGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDDHE-NRYLGELS--FRSEVKNVRLRRDR---IVVV--LNQKVYVYNF 121 (359)
Q Consensus 50 ~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~~~-~~~~~~~~--~~~~v~~~~~~~~~---~~~~--~d~~i~i~d~ 121 (359)
.+++..+.+.|.+..+++++ ..-+.+.|+.. +.+.+-+. .+-.|-.+.|+|.. ..++ ....-.+|++
T Consensus 24 ~~~~~a~si~p~grdi~lAs-----r~gl~i~dld~p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVsts~qkaiiwnl 98 (1081)
T KOG0309|consen 24 DGGFNAVSINPSGRDIVLAS-----RQGLYIIDLDDPFTPPRWLHHITPWQVADVQWSPHPAKPYWIVSTSNQKAIIWNL 98 (1081)
T ss_pred cCcccceeeccccchhhhhh-----hcCeEEEeccCCCCCceeeeccCcchhcceecccCCCCceeEEecCcchhhhhhh
Confidence 57778888889998888877 24466666544 33333333 23456777887753 3444 5666778888
Q ss_pred c---cceeeeeEeccCCCceeeeeecCCCccEEEecCCCCeeEEEEecCC--eeeEEeecccccccEEEEcc-CCcEEEE
Q 018248 122 T---DLKLVDQIETVVNPTGLCDVSQNAGPMVMACPGLLKGQVRVEDYGT--KKSKYITAHASRIASIAMTL-DGRFVAT 195 (359)
Q Consensus 122 ~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~v~~~~~~~--~~~~~~~~~~~~i~~~~~s~-~~~~l~~ 195 (359)
. +......+.+|...+..+.|.+.... ++++ ++.|-.+..|+.+. .++..+..-......++|+- ++..+|+
T Consensus 99 A~ss~~aIef~lhghsraitd~n~~~q~pd-Vlat-csvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlas 176 (1081)
T KOG0309|consen 99 AKSSSNAIEFVLHGHSRAITDINFNPQHPD-VLAT-CSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLAS 176 (1081)
T ss_pred hcCCccceEEEEecCccceeccccCCCCCc-ceee-ccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhh
Confidence 3 23344455677777777777776654 3444 67888999999876 44555555566778899986 4445544
Q ss_pred EeCCCCeEEEEEcCCC-cEEEEeecCCCCcceEEEEecC-CCCEEEEEcCCCcEEEEEccCCCCC
Q 018248 196 ASSKGTLIRVFNTMDG-SLLQEMRRGAERAEIYSLAFSS-NAQWLAASSDKGTVHVFGLKVDSGS 258 (359)
Q Consensus 196 ~~~dg~~i~iwd~~~~-~~~~~~~~~~~~~~i~~~~~s~-~~~~l~~~~~dg~i~iw~~~~~~~~ 258 (359)
+.... |.+||++.| .++..+++ |...|+.++|.. -...+.+.+.||+|++||.+.....
T Consensus 177 -shg~~-i~vwd~r~gs~pl~s~K~--~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e 237 (1081)
T KOG0309|consen 177 -SHGND-IFVWDLRKGSTPLCSLKG--HVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTE 237 (1081)
T ss_pred -ccCCc-eEEEeccCCCcceEEecc--cceeeehHHHhhhhhhhhcccCCCCceeeecccccccc
Confidence 44445 999999876 46677776 777888888864 2346778899999999999876644
No 325
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.48 E-value=7e-06 Score=72.85 Aligned_cols=143 Identities=15% Similarity=0.170 Sum_probs=102.5
Q ss_pred EEecCCCCeeEEEEecCCeeeEEeecccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcEEEEeecCCCCcceEEEE
Q 018248 151 MACPGLLKGQVRVEDYGTKKSKYITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLA 230 (359)
Q Consensus 151 l~~~g~~d~~v~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~ 230 (359)
++. |..+|.|++...++.+ .....|... ..+|.++++|+.||+ |.|..+-+.+...++.- ..++.+++
T Consensus 52 ~~~-GtH~g~v~~~~~~~~~-~~~~~~s~~------~~~Gey~asCS~DGk-v~I~sl~~~~~~~~~df---~rpiksia 119 (846)
T KOG2066|consen 52 FAL-GTHRGAVYLTTCQGNP-KTNFDHSSS------ILEGEYVASCSDDGK-VVIGSLFTDDEITQYDF---KRPIKSIA 119 (846)
T ss_pred eee-ccccceEEEEecCCcc-ccccccccc------ccCCceEEEecCCCc-EEEeeccCCccceeEec---CCcceeEE
Confidence 555 7789999998888776 555555444 668999999999999 99999988887776663 36899999
Q ss_pred ecCC-----CCEEEEEcCCCcEEEEEccCCCCCCCCCccccCCCCCccCCCCCceeeeeEeeeecceEEecccceeEEee
Q 018248 231 FSSN-----AQWLAASSDKGTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSAISSFRFIRGVLPKYFSSKWSMAQFRL 305 (359)
Q Consensus 231 ~s~~-----~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (359)
++|+ .+.+++|+..| +.++.-+--+.. .-..+.-
T Consensus 120 l~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk----------------------------------------~~v~l~~ 158 (846)
T KOG2066|consen 120 LHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNK----------------------------------------DSVVLSE 158 (846)
T ss_pred eccchhhhhhhheeecCcce-EEEehhhhhcCc----------------------------------------cceeeec
Confidence 9998 56788999888 766644322211 0001222
Q ss_pred cCCcEEEeeecccCCEEEEEecCCeEEEEEeCCCCCCceEEeeecc
Q 018248 306 PENVQYLVGFGRQNNTIVIVGLDGSYYKCEFDPMKGGEMHQLEHYK 351 (359)
Q Consensus 306 ~~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~ 351 (359)
..|.|.++.|. |++||-++.+| |+||+... +..+..+++..
T Consensus 159 ~eG~I~~i~W~--g~lIAWand~G-v~vyd~~~--~~~l~~i~~p~ 199 (846)
T KOG2066|consen 159 GEGPIHSIKWR--GNLIAWANDDG-VKVYDTPT--RQRLTNIPPPS 199 (846)
T ss_pred CccceEEEEec--CcEEEEecCCC-cEEEeccc--cceeeccCCCC
Confidence 35889999986 46999999998 89998766 33444444444
No 326
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.45 E-value=1.1e-05 Score=72.25 Aligned_cols=113 Identities=12% Similarity=0.105 Sum_probs=89.7
Q ss_pred CceeEEEEeccCCEEEEEecCCCCCCeEEEEECCCccEEeeeccCcceeEEEEecceeEEE---ecCeEEEEEcccceee
Q 018248 51 GGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDDHENRYLGELSFRSEVKNVRLRRDRIVVV---LNQKVYVYNFTDLKLV 127 (359)
Q Consensus 51 ~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~ 127 (359)
+..++.+|+|....+++++-+....|.|.||- ++|++......+-.+.+++|+|....++ .-|.+.+|...+.+.-
T Consensus 16 avsti~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~h 94 (1416)
T KOG3617|consen 16 AVSTISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDVTYPVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETH 94 (1416)
T ss_pred ccccccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCcccccceehhhhccChHHHHHhhccccceeEEEecCCceee
Confidence 33456688888888877665443568999986 8888877777777788899999998888 7899999998777766
Q ss_pred eeEeccCCCceeeeeecCCCccEEEecCCCCeeEEEEecC
Q 018248 128 DQIETVVNPTGLCDVSQNAGPMVMACPGLLKGQVRVEDYG 167 (359)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~v~~~~~~ 167 (359)
....+|..++..+.|+++|.. +.+ +..-|.+.+|..+
T Consensus 95 tv~~th~a~i~~l~wS~~G~~--l~t-~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 95 TVVETHPAPIQGLDWSHDGTV--LMT-LDNPGSVHLWRYD 131 (1416)
T ss_pred eeccCCCCCceeEEecCCCCe--EEE-cCCCceeEEEEee
Confidence 666789999999999999975 555 6677888888766
No 327
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=98.44 E-value=0.00014 Score=62.17 Aligned_cols=220 Identities=12% Similarity=0.086 Sum_probs=116.6
Q ss_pred ccCCCEEEEec----------CCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEECC
Q 018248 15 NQDHGCFATGT----------ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDDH 84 (359)
Q Consensus 15 s~~g~~l~~~~----------d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~~ 84 (359)
|||+++++... .+.+.|||+++++....... ...+....|+|+++.++++. ++.|.+++..
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~----~~~~~~~~~sP~g~~~~~v~-----~~nly~~~~~ 71 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPP----PPKLQDAKWSPDGKYIAFVR-----DNNLYLRDLA 71 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-E----ETTBSEEEE-SSSTEEEEEE-----TTEEEEESST
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCC----ccccccceeecCCCeeEEEe-----cCceEEEECC
Confidence 68999988743 35689999998544322111 46788899999999999997 5899999987
Q ss_pred CccEEeeeccC------------------cceeEEEEecceeEEE----ecCeEEEEEcccceeeeeEeccCCCceeeee
Q 018248 85 ENRYLGELSFR------------------SEVKNVRLRRDRIVVV----LNQKVYVYNFTDLKLVDQIETVVNPTGLCDV 142 (359)
Q Consensus 85 ~~~~~~~~~~~------------------~~v~~~~~~~~~~~~~----~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~ 142 (359)
+++..+.-... +.-..+-|+||++.++ .+..|..+.+........ .......+.+
T Consensus 72 ~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~---~yp~~~~~~Y 148 (353)
T PF00930_consen 72 TGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDS---QYPEVESIRY 148 (353)
T ss_dssp TSEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTE---SS-EEEEEE-
T ss_pred CCCeEEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccc---cCCccccccc
Confidence 77443322111 1235688999998888 566666655421100000 0000111111
Q ss_pred ecCCCccEEEecCCCCeeEEE--EecCCeeeEEe------ecccccccEEEEccCCcEEEE--EeCCCCe--EEEEEcCC
Q 018248 143 SQNAGPMVMACPGLLKGQVRV--EDYGTKKSKYI------TAHASRIASIAMTLDGRFVAT--ASSKGTL--IRVFNTMD 210 (359)
Q Consensus 143 ~~~~~~~~l~~~g~~d~~v~~--~~~~~~~~~~~------~~~~~~i~~~~~s~~~~~l~~--~~~dg~~--i~iwd~~~ 210 (359)
-. +|..+..+.+ ++..+.....+ ......+..+.|.++++.|+. .+.+... +.++|..+
T Consensus 149 Pk---------~G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~t 219 (353)
T PF00930_consen 149 PK---------AGDPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDAST 219 (353)
T ss_dssp -B---------TTS---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECT
T ss_pred CC---------CCCcCCceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCC
Confidence 11 1323333443 44444333222 123456889999999984433 3333321 66778877
Q ss_pred CcEEEEeecCCCCcce---EEEEec-CCCC-EEEEEcCCCcEEEEEccCCC
Q 018248 211 GSLLQEMRRGAERAEI---YSLAFS-SNAQ-WLAASSDKGTVHVFGLKVDS 256 (359)
Q Consensus 211 ~~~~~~~~~~~~~~~i---~~~~~s-~~~~-~l~~~~~dg~i~iw~~~~~~ 256 (359)
+.....+... ..+.| ....|. +++. +|.....+|.-+|+-++...
T Consensus 220 g~~~~~~~e~-~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~ 269 (353)
T PF00930_consen 220 GETRVVLEET-SDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDG 269 (353)
T ss_dssp TTCEEEEEEE-SSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTS
T ss_pred CceeEEEEec-CCcceeeecccccccCCCCEEEEEEEcCCCcEEEEEcccc
Confidence 7654333321 22333 244544 5554 55555577776666665543
No 328
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.43 E-value=1e-05 Score=72.92 Aligned_cols=178 Identities=11% Similarity=0.223 Sum_probs=123.4
Q ss_pred CCCEEEEec-CCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEECCCccEEeeec-c
Q 018248 17 DHGCFATGT-ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDDHENRYLGELS-F 94 (359)
Q Consensus 17 ~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~-~ 94 (359)
++..++.|+ ...+..+|+.+.++.....+. ..++..++ .++.. ++++. ..|+|.+-|..+.+.++++. |
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~---a~~v~imR--~Nnr~-lf~G~---t~G~V~LrD~~s~~~iht~~aH 216 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNVS---ASGVTIMR--YNNRN-LFCGD---TRGTVFLRDPNSFETIHTFDAH 216 (1118)
T ss_pred CCcceeecchhhheeeeecccceeeeeeecc---CCceEEEE--ecCcE-EEeec---ccceEEeecCCcCceeeeeecc
Confidence 445666676 777888888876665444443 33455444 33333 33433 46999999999999999999 9
Q ss_pred CcceeEEEEecceeEEE----------ecCeEEEEEcccceeeeeEeccCCCceeeeeecCCCccEEEecCCCCeeEEEE
Q 018248 95 RSEVKNVRLRRDRIVVV----------LNQKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAGPMVMACPGLLKGQVRVE 164 (359)
Q Consensus 95 ~~~v~~~~~~~~~~~~~----------~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~v~~~ 164 (359)
.+.|.++...-+-.+-+ .|.-|+|||++..+.+..+.-+.++ ..+.|.|.-...+.++ +..|...+-
T Consensus 217 s~siSDfDv~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P-~flrf~Psl~t~~~V~--S~sGq~q~v 293 (1118)
T KOG1275|consen 217 SGSISDFDVQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGP-QFLRFHPSLTTRLAVT--SQSGQFQFV 293 (1118)
T ss_pred ccceeeeeccCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCc-hhhhhcccccceEEEE--ecccceeec
Confidence 99998887754432222 6788999999988887777666555 5677888765544443 246777773
Q ss_pred e---cCCe--eeEEeecccccccEEEEccCCcEEEEEeCCCCeEEEEE
Q 018248 165 D---YGTK--KSKYITAHASRIASIAMTLDGRFVATASSKGTLIRVFN 207 (359)
Q Consensus 165 ~---~~~~--~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd 207 (359)
+ .... .+..+......+..+.+|+++..+|.|..+|. |.+|.
T Consensus 294 d~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~-v~~wa 340 (1118)
T KOG1275|consen 294 DTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGH-VNLWA 340 (1118)
T ss_pred cccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCc-Eeeec
Confidence 3 1112 23333444556999999999999999999999 99997
No 329
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=98.43 E-value=0.00043 Score=58.33 Aligned_cols=214 Identities=12% Similarity=0.207 Sum_probs=120.9
Q ss_pred CceEEEEcCCCcceeeeecccCCCCceeEEE-EeccC-----CEEEEEecCCC-------CCCeEEEEECCCc-------
Q 018248 27 TGFRVYLSDPYKPIMRRDFDRNPRGGTQLVS-MLFRS-----NIICLVNSGPH-------QSNKVMIWDDHEN------- 86 (359)
Q Consensus 27 ~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~-~~~~~-----~~~~~~~~~~~-------~d~~i~iwd~~~~------- 86 (359)
..|++.|..+.+......+. ....+.+++ +.... ...++++.+.. ..|.|.++++...
T Consensus 2 s~i~l~d~~~~~~~~~~~l~--~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l 79 (321)
T PF03178_consen 2 SSIRLVDPTTFEVLDSFELE--PNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKL 79 (321)
T ss_dssp -EEEEEETTTSSEEEEEEEE--TTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EE
T ss_pred cEEEEEeCCCCeEEEEEECC--CCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEE
Confidence 35788888877766666664 222333333 22221 33333333211 1289999998884
Q ss_pred cEEeeeccCcceeEEEEecceeEEE-ecCeEEEEEcccceeeeeEeccCCCceeeeeecCCCccEEEecCCCCeeEEE--
Q 018248 87 RYLGELSFRSEVKNVRLRRDRIVVV-LNQKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAGPMVMACPGLLKGQVRV-- 163 (359)
Q Consensus 87 ~~~~~~~~~~~v~~~~~~~~~~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~v~~-- 163 (359)
+.+.....+++|.+++--. +.+++ .++.|.+|++...+.+........+....++...++. +++ |.....+.+
T Consensus 80 ~~i~~~~~~g~V~ai~~~~-~~lv~~~g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~~~~--I~v-gD~~~sv~~~~ 155 (321)
T PF03178_consen 80 KLIHSTEVKGPVTAICSFN-GRLVVAVGNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVFKNY--ILV-GDAMKSVSLLR 155 (321)
T ss_dssp EEEEEEEESS-EEEEEEET-TEEEEEETTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEETTE--EEE-EESSSSEEEEE
T ss_pred EEEEEEeecCcceEhhhhC-CEEEEeecCEEEEEEccCcccchhhheecceEEEEEEeccccE--EEE-EEcccCEEEEE
Confidence 2233334788999998774 44555 9999999999776622222223333455666666654 443 333344554
Q ss_pred EecCCeeeEEeec--ccccccEEEEccCCcEEEEEeCCCCeEEEEEcCC-------Cc----EEEEeecCCCCcceEEE-
Q 018248 164 EDYGTKKSKYITA--HASRIASIAMTLDGRFVATASSKGTLIRVFNTMD-------GS----LLQEMRRGAERAEIYSL- 229 (359)
Q Consensus 164 ~~~~~~~~~~~~~--~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~-------~~----~~~~~~~~~~~~~i~~~- 229 (359)
|+.....+..+.. ....++++.|-++++.++.+..+|. +.++.... +. ....+. ....|+++
T Consensus 156 ~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gn-l~~l~~~~~~~~~~~~~~~L~~~~~f~---lg~~v~~~~ 231 (321)
T PF03178_consen 156 YDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGN-LFVLRYNPEIPNSRDGDPKLERISSFH---LGDIVNSFR 231 (321)
T ss_dssp EETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSE-EEEEEE-SS-SSTTTTTTBEEEEEEEE----SS-EEEEE
T ss_pred EEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCe-EEEEEECCCCcccccccccceeEEEEE---CCCccceEE
Confidence 6765554444432 3456788888867778999999999 99988752 22 223333 23567777
Q ss_pred --EecCC--CC------EEEEEcCCCcEEEE
Q 018248 230 --AFSSN--AQ------WLAASSDKGTVHVF 250 (359)
Q Consensus 230 --~~s~~--~~------~l~~~~~dg~i~iw 250 (359)
.+.|. +. .++.++.+|.|.+.
T Consensus 232 ~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~l 262 (321)
T PF03178_consen 232 RGSLIPRSGSSESPNRPQILYGTVDGSIGVL 262 (321)
T ss_dssp E--SS--SSSS-TTEEEEEEEEETTS-EEEE
T ss_pred EEEeeecCCCCcccccceEEEEecCCEEEEE
Confidence 55552 22 47778889988843
No 330
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.43 E-value=7.6e-05 Score=66.03 Aligned_cols=167 Identities=10% Similarity=0.064 Sum_probs=106.6
Q ss_pred CCCeEEEEECCCccEEeeeccCcceeEEEEecceeEEE-e------cCeEEEEEcccceeeeeEeccCCCceeeeeecCC
Q 018248 74 QSNKVMIWDDHENRYLGELSFRSEVKNVRLRRDRIVVV-L------NQKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNA 146 (359)
Q Consensus 74 ~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~------d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (359)
..+.+.+.|.++.+...++........+.++|++.+++ . ..++...+..+...+..+... ...++.+++
T Consensus 213 y~~~vSvID~etmeV~~qV~Vdgnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~----~iea~vkdG 288 (635)
T PRK02888 213 YRSLFTAVDAETMEVAWQVMVDGNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIA----RIEEAVKAG 288 (635)
T ss_pred eeEEEEEEECccceEEEEEEeCCCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchH----HHHHhhhCC
Confidence 45778888888888888877666778889999998876 1 123333332222111111110 011334455
Q ss_pred CccEEEecCCCCeeEEEEecCC------eeeEEeecccccccEEEEccCCcEEEEEeC-CCCeEEEEEcCCCcE------
Q 018248 147 GPMVMACPGLLKGQVRVEDYGT------KKSKYITAHASRIASIAMTLDGRFVATASS-KGTLIRVFNTMDGSL------ 213 (359)
Q Consensus 147 ~~~~l~~~g~~d~~v~~~~~~~------~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~-dg~~i~iwd~~~~~~------ 213 (359)
+..++ .++.|.+.+... ..+..+. -......+.++|||+++++++. +.. |.|.|+.+.+.
T Consensus 289 K~~~V-----~gn~V~VID~~t~~~~~~~v~~yIP-VGKsPHGV~vSPDGkylyVanklS~t-VSVIDv~k~k~~~~~~~ 361 (635)
T PRK02888 289 KFKTI-----GGSKVPVVDGRKAANAGSALTRYVP-VPKNPHGVNTSPDGKYFIANGKLSPT-VTVIDVRKLDDLFDGKI 361 (635)
T ss_pred CEEEE-----CCCEEEEEECCccccCCcceEEEEE-CCCCccceEECCCCCEEEEeCCCCCc-EEEEEChhhhhhhhccC
Confidence 54332 145677744433 2333343 3456689999999998877764 777 99999987552
Q ss_pred ------EEEeecCCCCcceEEEEecCCCCEEEEEcCCCcEEEEEccC
Q 018248 214 ------LQEMRRGAERAEIYSLAFSSNAQWLAASSDKGTVHVFGLKV 254 (359)
Q Consensus 214 ------~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~ 254 (359)
..+.+.+ ......+|.++|....+---|..|-.||+..
T Consensus 362 ~~~~~vvaevevG---lGPLHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 362 KPRDAVVAEPELG---LGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred CccceEEEeeccC---CCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence 3444432 2446788999999888888999999999987
No 331
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.42 E-value=1e-05 Score=71.89 Aligned_cols=145 Identities=12% Similarity=0.075 Sum_probs=92.7
Q ss_pred cceeEEEEecceeEEE-ecCeEEEEEcccceeeeeEeccCCCceeeeeecCCCccEEEecCCCCeeEEEEec-CCeeeEE
Q 018248 96 SEVKNVRLRRDRIVVV-LNQKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAGPMVMACPGLLKGQVRVEDY-GTKKSKY 173 (359)
Q Consensus 96 ~~v~~~~~~~~~~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~v~~~~~-~~~~~~~ 173 (359)
..+.+.+++..-..+. .+|.|++++.. +.. .+...|... +-++.++++ ++.||+|.|-.. +.+....
T Consensus 40 D~is~~av~~~~~~~GtH~g~v~~~~~~-~~~-~~~~~~s~~--------~~~Gey~as-CS~DGkv~I~sl~~~~~~~~ 108 (846)
T KOG2066|consen 40 DAISCCAVHDKFFALGTHRGAVYLTTCQ-GNP-KTNFDHSSS--------ILEGEYVAS-CSDDGKVVIGSLFTDDEITQ 108 (846)
T ss_pred hHHHHHHhhcceeeeccccceEEEEecC-Ccc-ccccccccc--------ccCCceEEE-ecCCCcEEEeeccCCcccee
Confidence 4455555554333333 78899999863 333 222222221 444556887 889999998433 3333333
Q ss_pred eecccccccEEEEccC-----CcEEEEEeCCCCeEEEEEcCCCcEEEEeecCCCCcceEEEEecCCCCEEEEEcCCCcEE
Q 018248 174 ITAHASRIASIAMTLD-----GRFVATASSKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSNAQWLAASSDKGTVH 248 (359)
Q Consensus 174 ~~~~~~~i~~~~~s~~-----~~~l~~~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~ 248 (359)
+ .-..++.+++++|+ .+.+++|+..| +.++.-+-.........+...++|.++.| .|.++|-++++| |+
T Consensus 109 ~-df~rpiksial~Pd~~~~~sk~fv~GG~ag--lvL~er~wlgnk~~v~l~~~eG~I~~i~W--~g~lIAWand~G-v~ 182 (846)
T KOG2066|consen 109 Y-DFKRPIKSIALHPDFSRQQSKQFVSGGMAG--LVLSERNWLGNKDSVVLSEGEGPIHSIKW--RGNLIAWANDDG-VK 182 (846)
T ss_pred E-ecCCcceeEEeccchhhhhhhheeecCcce--EEEehhhhhcCccceeeecCccceEEEEe--cCcEEEEecCCC-cE
Confidence 3 34578999999998 45788888777 66665332111112222335689999999 588999999888 99
Q ss_pred EEEccCCCC
Q 018248 249 VFGLKVDSG 257 (359)
Q Consensus 249 iw~~~~~~~ 257 (359)
|||+.+++.
T Consensus 183 vyd~~~~~~ 191 (846)
T KOG2066|consen 183 VYDTPTRQR 191 (846)
T ss_pred EEeccccce
Confidence 999998774
No 332
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.42 E-value=0.0001 Score=66.32 Aligned_cols=190 Identities=11% Similarity=0.200 Sum_probs=117.5
Q ss_pred eEEEEeccCCEEEEEecCCCCCCeEEEEECCCccEEeeec-cCcc-eeEEEEecceeEEE---ec-C----eEEEEEccc
Q 018248 54 QLVSMLFRSNIICLVNSGPHQSNKVMIWDDHENRYLGELS-FRSE-VKNVRLRRDRIVVV---LN-Q----KVYVYNFTD 123 (359)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~-~~~~-v~~~~~~~~~~~~~---~d-~----~i~i~d~~~ 123 (359)
..-++++++..+++.+ .+|.|.+.+ ..-+.++.++ ++.. |..+....+..+++ .| + .+++|+++.
T Consensus 27 ~isc~~s~~~~vvigt----~~G~V~~Ln-~s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek 101 (933)
T KOG2114|consen 27 AISCCSSSTGSVVIGT----ADGRVVILN-SSFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEK 101 (933)
T ss_pred ceeEEcCCCceEEEee----ccccEEEec-ccceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccc
Confidence 3445666677777777 789998887 4555556666 5544 44444444445555 22 2 699999843
Q ss_pred c------eee--eeEec-----cCCCceeeeeecCCCccEEEecCCCCeeEEEEec---CCeeeEE--eecccccccEEE
Q 018248 124 L------KLV--DQIET-----VVNPTGLCDVSQNAGPMVMACPGLLKGQVRVEDY---GTKKSKY--ITAHASRIASIA 185 (359)
Q Consensus 124 ~------~~~--~~~~~-----~~~~~~~~~~~~~~~~~~l~~~g~~d~~v~~~~~---~~~~~~~--~~~~~~~i~~~~ 185 (359)
. +++ ..+.+ ...++.+++++.+- ..+|+ |-.+|.|..+.- +.+-.+. ......+|+.++
T Consensus 102 ~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l--~~Iv~-Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~ 178 (933)
T KOG2114|consen 102 VDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDL--KTIVC-GFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLA 178 (933)
T ss_pred cCCCCCcceeeeeeeeccCCCCCCCcceEEEEEccc--cEEEE-EecCcEEEEEcCcchhccccceeeeccCCCCceeeE
Confidence 2 233 12222 24556777777773 34666 888999887332 2222222 233467999999
Q ss_pred EccCCcE-EEEEeCCCCeEEEEEcCCCcEEEE-eecCCCCcceEEEEecCCCCEEEEEcCCCcEEEEEccCCC
Q 018248 186 MTLDGRF-VATASSKGTLIRVFNTMDGSLLQE-MRRGAERAEIYSLAFSSNAQWLAASSDKGTVHVFGLKVDS 256 (359)
Q Consensus 186 ~s~~~~~-l~~~~~dg~~i~iwd~~~~~~~~~-~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~ 256 (359)
+..+++. +.++.. .. |.+|.+....+... +.. +.....|..+++....+++++.. .+.+|+.+..+
T Consensus 179 ~~~d~~s~lFv~Tt-~~-V~~y~l~gr~p~~~~ld~--~G~~lnCss~~~~t~qfIca~~e-~l~fY~sd~~~ 246 (933)
T KOG2114|consen 179 LRSDGKSVLFVATT-EQ-VMLYSLSGRTPSLKVLDN--NGISLNCSSFSDGTYQFICAGSE-FLYFYDSDGRG 246 (933)
T ss_pred EecCCceeEEEEec-ce-eEEEEecCCCcceeeecc--CCccceeeecCCCCccEEEecCc-eEEEEcCCCcc
Confidence 9998886 334433 34 99999874442323 332 66788999998766556666544 49999988654
No 333
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.37 E-value=7.8e-06 Score=64.53 Aligned_cols=159 Identities=11% Similarity=0.270 Sum_probs=103.4
Q ss_pred cCcceeEEEEecceeEEE--ecCeEEEEEcccce---eeeeEeccC-----CCceeeeeecCCCccEEEecCCCCeeEEE
Q 018248 94 FRSEVKNVRLRRDRIVVV--LNQKVYVYNFTDLK---LVDQIETVV-----NPTGLCDVSQNAGPMVMACPGLLKGQVRV 163 (359)
Q Consensus 94 ~~~~v~~~~~~~~~~~~~--~d~~i~i~d~~~~~---~~~~~~~~~-----~~~~~~~~~~~~~~~~l~~~g~~d~~v~~ 163 (359)
|+..|.++.++.|...++ .|=.|.+|++.-.. .+..++++. .-++...|+|.....+..+ +..|.|++
T Consensus 171 H~yhiNSiS~NsD~et~lSaDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYS--sSkG~Ikl 248 (460)
T COG5170 171 HPYHINSISFNSDKETLLSADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYS--SSKGEIKL 248 (460)
T ss_pred ceeEeeeeeecCchheeeeccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEe--cCCCcEEe
Confidence 778899999999987777 77789999984321 122222221 2355677888766544443 35899999
Q ss_pred EecCCee-----eE------------EeecccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCC-cEEEEeecCC----
Q 018248 164 EDYGTKK-----SK------------YITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDG-SLLQEMRRGA---- 221 (359)
Q Consensus 164 ~~~~~~~-----~~------------~~~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~-~~~~~~~~~~---- 221 (359)
.+.+... .+ -+.+-...|..+.|+++|+++++-+.- + |+|||.+.. .++.++.-+.
T Consensus 249 ~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdyl-t-vkiwDvnm~k~pikTi~~h~~l~~ 326 (460)
T COG5170 249 NDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDYL-T-VKIWDVNMAKNPIKTIPMHCDLMD 326 (460)
T ss_pred hhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEeccc-e-EEEEecccccCCceeechHHHHHH
Confidence 5544211 11 112234578899999999999876554 4 999998764 4555553211
Q ss_pred ------CCcce---EEEEecCCCCEEEEEcCCCcEEEEEccCCC
Q 018248 222 ------ERAEI---YSLAFSSNAQWLAASSDKGTVHVFGLKVDS 256 (359)
Q Consensus 222 ------~~~~i---~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~ 256 (359)
....| ..+.||.|.+.+.+|+.....-|+-+.+..
T Consensus 327 ~l~d~YEnDaifdkFeisfSgd~~~v~sgsy~NNfgiyp~~ssg 370 (460)
T COG5170 327 ELNDVYENDAIFDKFEISFSGDDKHVLSGSYSNNFGIYPTDSSG 370 (460)
T ss_pred HHHhhhhccceeeeEEEEecCCcccccccccccceeeeccccCC
Confidence 01222 357889898999999988888888755543
No 334
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=98.34 E-value=7.9e-05 Score=64.39 Aligned_cols=184 Identities=13% Similarity=0.085 Sum_probs=116.8
Q ss_pred CCceEEEEEccCCCEEEEec---C--CceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEE
Q 018248 6 PITIHHLALNQDHGCFATGT---E--TGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMI 80 (359)
Q Consensus 6 ~~~v~~~~~s~~g~~l~~~~---d--~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~i 80 (359)
...+..-+|+|++..++.-. . ..+.++++++++......+ .+....-+|+|+++.++++.... ..-.|.+
T Consensus 192 ~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~----~g~~~~P~fspDG~~l~f~~~rd-g~~~iy~ 266 (425)
T COG0823 192 GSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNF----NGNNGAPAFSPDGSKLAFSSSRD-GSPDIYL 266 (425)
T ss_pred CcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeecc----CCccCCccCCCCCCEEEEEECCC-CCccEEE
Confidence 34566778999999876654 2 3488999998877665665 34445568999999999988754 4556777
Q ss_pred EECCCccEEeeec-cCcceeEEEEecceeEEE----ecC--eEEEEEcccceeeeeEeccCCCceeeeeecCCCccEEEe
Q 018248 81 WDDHENRYLGELS-FRSEVKNVRLRRDRIVVV----LNQ--KVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAGPMVMAC 153 (359)
Q Consensus 81 wd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~----~d~--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 153 (359)
+|+..++..+ +. ..+.-..-.|+|+|+.++ ..| .|.+++.+.++. ..+......-....++|+++.+.+..
T Consensus 267 ~dl~~~~~~~-Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~-~riT~~~~~~~~p~~SpdG~~i~~~~ 344 (425)
T COG0823 267 MDLDGKNLPR-LTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV-TRLTFSGGGNSNPVWSPDGDKIVFES 344 (425)
T ss_pred EcCCCCccee-cccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce-eEeeccCCCCcCccCCCCCCEEEEEe
Confidence 8877776433 55 333334677999999888 333 577777755544 33333333333678899998755443
Q ss_pred cCCCCee--EEEEecCCee-eEEeecccccccEEEEccCCcEEEEEeCC
Q 018248 154 PGLLKGQ--VRVEDYGTKK-SKYITAHASRIASIAMTLDGRFVATASSK 199 (359)
Q Consensus 154 ~g~~d~~--v~~~~~~~~~-~~~~~~~~~~i~~~~~s~~~~~l~~~~~d 199 (359)
..+|. |.+.+..... .+.+ .+........|.|+++.+...+..
T Consensus 345 --~~~g~~~i~~~~~~~~~~~~~l-t~~~~~e~ps~~~ng~~i~~~s~~ 390 (425)
T COG0823 345 --SSGGQWDIDKNDLASGGKIRIL-TSTYLNESPSWAPNGRMIMFSSGQ 390 (425)
T ss_pred --ccCCceeeEEeccCCCCcEEEc-cccccCCCCCcCCCCceEEEeccC
Confidence 23454 3333333322 3333 344455567788898877655443
No 335
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.30 E-value=0.0024 Score=57.11 Aligned_cols=109 Identities=10% Similarity=0.085 Sum_probs=65.8
Q ss_pred CEEEEec-CCceEEEEcCCCcceeeeecccC---CCCceeEEEEeccC-CEEEEEecCCCCCCeEEEEECCCccEEeeec
Q 018248 19 GCFATGT-ETGFRVYLSDPYKPIMRRDFDRN---PRGGTQLVSMLFRS-NIICLVNSGPHQSNKVMIWDDHENRYLGELS 93 (359)
Q Consensus 19 ~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~---h~~~v~~~~~~~~~-~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~ 93 (359)
..+.+++ ++.+.-.|..+++.+........ +...+......... ..+++.+ .++.|.-+|.++|+.+..+.
T Consensus 62 g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~~~~~V~v~~----~~g~v~AlD~~TG~~~W~~~ 137 (488)
T cd00216 62 GDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYWDPRKVFFGT----FDGRLVALDAETGKQVWKFG 137 (488)
T ss_pred CEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEccCCeEEEec----CCCeEEEEECCCCCEeeeec
Confidence 3454555 89999999999888876655300 00000000011122 4555544 57999999999999998877
Q ss_pred cCcc------ee-EEEEecceeEEE-e----------cCeEEEEEcccceeeeeEec
Q 018248 94 FRSE------VK-NVRLRRDRIVVV-L----------NQKVYVYNFTDLKLVDQIET 132 (359)
Q Consensus 94 ~~~~------v~-~~~~~~~~~~~~-~----------d~~i~i~d~~~~~~~~~~~~ 132 (359)
.... +. ...+. ++.+++ . ++.+..+|..+++.+..++.
T Consensus 138 ~~~~~~~~~~i~ssP~v~-~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~ 193 (488)
T cd00216 138 NNDQVPPGYTMTGAPTIV-KKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYT 193 (488)
T ss_pred CCCCcCcceEecCCCEEE-CCEEEEeccccccccCCCCcEEEEEECCCCceeeEeec
Confidence 3332 11 12222 244444 1 57899999999998888765
No 336
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=98.30 E-value=0.00054 Score=58.54 Aligned_cols=168 Identities=9% Similarity=0.091 Sum_probs=90.4
Q ss_pred CCeEEEEECCCccEEeeeccCcceeEEEEecceeEEE--ecCeEEEEEcccceeeeeEecc-----------------CC
Q 018248 75 SNKVMIWDDHENRYLGELSFRSEVKNVRLRRDRIVVV--LNQKVYVYNFTDLKLVDQIETV-----------------VN 135 (359)
Q Consensus 75 d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~--~d~~i~i~d~~~~~~~~~~~~~-----------------~~ 135 (359)
.+.+.++|+.+++..........+....|+|+|..++ .++.|++++..+++..+.-... -.
T Consensus 22 ~~~y~i~d~~~~~~~~l~~~~~~~~~~~~sP~g~~~~~v~~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~ 101 (353)
T PF00930_consen 22 KGDYYIYDIETGEITPLTPPPPKLQDAKWSPDGKYIAFVRDNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEVFD 101 (353)
T ss_dssp EEEEEEEETTTTEEEESS-EETTBSEEEE-SSSTEEEEEETTEEEEESSTTSEEEESES--TTTEEESB--HHHHHHTSS
T ss_pred ceeEEEEecCCCceEECcCCccccccceeecCCCeeEEEecCceEEEECCCCCeEEeccccceeEEcCccceeccccccc
Confidence 4778999999976665554567889999999999988 9999999998766443222111 11
Q ss_pred CceeeeeecCCCccEEEecCCCCeeEEEEecCCeeeEEeec--ccc---cccEEEEccCCcEEEEEeCCCCeEEEEEcCC
Q 018248 136 PTGLCDVSQNAGPMVMACPGLLKGQVRVEDYGTKKSKYITA--HAS---RIASIAMTLDGRFVATASSKGTLIRVFNTMD 210 (359)
Q Consensus 136 ~~~~~~~~~~~~~~~l~~~g~~d~~v~~~~~~~~~~~~~~~--~~~---~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~ 210 (359)
.-..+.|+|+++. ||+ +++++..-+....... ... .+..+.+-.-|.-.... . +.|+|+.+
T Consensus 102 ~~~~~~WSpd~~~--la~-------~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v----~-l~v~~~~~ 167 (353)
T PF00930_consen 102 RRSAVWWSPDSKY--LAF-------LRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRV----S-LFVVDLAS 167 (353)
T ss_dssp SSBSEEE-TTSSE--EEE-------EEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EE----E-EEEEESSS
T ss_pred cccceEECCCCCE--EEE-------EEECCcCCceEEeeccCCccccCCcccccccCCCCCcCCce----E-EEEEECCC
Confidence 2245678888876 433 2222222222221111 111 23344442222211111 2 77789888
Q ss_pred CcEEE-Eeec--CCCCcceEEEEecCCCCEEEEE--cCCC---cEEEEEccCCC
Q 018248 211 GSLLQ-EMRR--GAERAEIYSLAFSSNAQWLAAS--SDKG---TVHVFGLKVDS 256 (359)
Q Consensus 211 ~~~~~-~~~~--~~~~~~i~~~~~s~~~~~l~~~--~~dg---~i~iw~~~~~~ 256 (359)
++... .... ......+..+.|+++++.|+.. +.+. .+.+.|..++.
T Consensus 168 ~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~ 221 (353)
T PF00930_consen 168 GKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGE 221 (353)
T ss_dssp TCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTT
T ss_pred CcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCc
Confidence 76532 2220 1134578999999999844332 2222 36666776654
No 337
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=98.29 E-value=0.0016 Score=56.16 Aligned_cols=218 Identities=17% Similarity=0.127 Sum_probs=145.2
Q ss_pred EEEEEccCCCEEEEec--CCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEECCCcc
Q 018248 10 HHLALNQDHGCFATGT--ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDDHENR 87 (359)
Q Consensus 10 ~~~~~s~~g~~l~~~~--d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~ 87 (359)
..++.++++..+.... ++.|.+.|.++......... |. ....+++.++++.+.++..+. .++.+.+.|..+++
T Consensus 77 ~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~v--G~--~P~~~~~~~~~~~vYV~n~~~-~~~~vsvid~~t~~ 151 (381)
T COG3391 77 AGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPV--GL--GPVGLAVDPDGKYVYVANAGN-GNNTVSVIDAATNK 151 (381)
T ss_pred cceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeee--cc--CCceEEECCCCCEEEEEeccc-CCceEEEEeCCCCe
Confidence 4678888888664444 78899999776544433333 22 556678888888877776542 26999999999999
Q ss_pred EEeeeccCcceeEEEEecceeEEE----ecCeEEEEEcccceeee-----eEeccCCCceeeeeecCCCccEEEecCCCC
Q 018248 88 YLGELSFRSEVKNVRLRRDRIVVV----LNQKVYVYNFTDLKLVD-----QIETVVNPTGLCDVSQNAGPMVMACPGLLK 158 (359)
Q Consensus 88 ~~~~~~~~~~v~~~~~~~~~~~~~----~d~~i~i~d~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d 158 (359)
.+........-..+++.|++..+. .++.|.+.|........ .+..... ...+.+.+++...+++..++.+
T Consensus 152 ~~~~~~vG~~P~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~-P~~i~v~~~g~~~yV~~~~~~~ 230 (381)
T COG3391 152 VTATIPVGNTPTGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTG-PAGIAVDPDGNRVYVANDGSGS 230 (381)
T ss_pred EEEEEecCCCcceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCC-CceEEECCCCCEEEEEeccCCC
Confidence 888865333338999999998665 58999999976555442 1222222 2458899999988887754444
Q ss_pred eeEEEEecCCeeeEEe--ecccccccEEEEccCCcEEEEEeCC-CCeEEEEEcCCCcEEEEeecCCC-CcceEEEEecCC
Q 018248 159 GQVRVEDYGTKKSKYI--TAHASRIASIAMTLDGRFVATASSK-GTLIRVFNTMDGSLLQEMRRGAE-RAEIYSLAFSSN 234 (359)
Q Consensus 159 ~~v~~~~~~~~~~~~~--~~~~~~i~~~~~s~~~~~l~~~~~d-g~~i~iwd~~~~~~~~~~~~~~~-~~~i~~~~~s~~ 234 (359)
+.+..-+.....+... .........+.++|+|+++.+.... +. +.+-|..+......+..+.. ...+..+++.+.
T Consensus 231 ~~v~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~~~~-V~vid~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 309 (381)
T COG3391 231 NNVLKIDTATGNVTATDLPVGSGAPRGVAVDPAGKAAYVANSQGGT-VSVIDGATDRVVKTGPTGNEALGEPVSIAISPL 309 (381)
T ss_pred ceEEEEeCCCceEEEeccccccCCCCceeECCCCCEEEEEecCCCe-EEEEeCCCCceeeeecccccccccceeccceee
Confidence 6777644444333332 1111146778999999998888544 66 99999888887776654322 123556666554
No 338
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.28 E-value=1.3e-05 Score=70.20 Aligned_cols=121 Identities=17% Similarity=0.231 Sum_probs=90.2
Q ss_pred cccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcEEEEeecCCCCcceEEEEecCCCCEEEEEcCCCcEEEEEccCCCCCC
Q 018248 180 RIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSNAQWLAASSDKGTVHVFGLKVDSGSP 259 (359)
Q Consensus 180 ~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~ 259 (359)
.+.--+++..+++++.|+.-|. +++|+...++....-..+ ..+.+.....|++..++|.|+..|.|.++.+....+.+
T Consensus 35 ~v~lTc~dst~~~l~~GsS~G~-lyl~~R~~~~~~~~~~~~-~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~ 112 (726)
T KOG3621|consen 35 RVKLTCVDATEEYLAMGSSAGS-VYLYNRHTGEMRKLKNEG-ATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRD 112 (726)
T ss_pred eEEEEEeecCCceEEEecccce-EEEEecCchhhhcccccC-ccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCc
Confidence 3444456678899999999999 999997666654433322 33567777889999999999999999999998855332
Q ss_pred CCCccccCCCCCccCCCCCceeeeeEeeeecceEEecccceeEEeecCCcEEEeeecccCCEEEEEecCCeEEEEEeCC
Q 018248 260 GTSKLHSASEPNLSSKNSSAISSFRFIRGVLPKYFSSKWSMAQFRLPENVQYLVGFGRQNNTIVIVGLDGSYYKCEFDP 338 (359)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~ 338 (359)
+. ++.+. -+-|...|++++|++|+..+++|..-|+|..-.++.
T Consensus 113 -----------------------~~--------~~t~~-----d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 113 -----------------------LD--------YVTPC-----DKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred -----------------------ce--------eeccc-----cccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence 11 11111 011456899999999999999999999999988887
No 339
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.22 E-value=0.00013 Score=59.96 Aligned_cols=238 Identities=10% Similarity=0.031 Sum_probs=128.1
Q ss_pred CCCCceEEEEEccCCC-EEEEec-CCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEE
Q 018248 4 PDPITIHHLALNQDHG-CFATGT-ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIW 81 (359)
Q Consensus 4 ~h~~~v~~~~~s~~g~-~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iw 81 (359)
.+...|..++|||..+ ++..++ ++.|+|.|+++........ .| ..++.++|.-+....+.++. .+|.|.+|
T Consensus 191 ~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~---a~-~~~wSC~wDlde~h~IYaGl---~nG~Vlvy 263 (463)
T KOG1645|consen 191 GEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYI---AY-NQIWSCCWDLDERHVIYAGL---QNGMVLVY 263 (463)
T ss_pred ccchhhhhhccCccccceeeeeccCceEEEEecccceeeehee---cc-CCceeeeeccCCcceeEEec---cCceEEEE
Confidence 3567799999999887 677788 9999999999755443333 23 77888899888876666665 56999999
Q ss_pred ECCCccE-Eeeec---cCcceeEEEEe------cceeEEE-ecCeEEEEEccc--ceeeeeEecc-CCCceeeeeecCCC
Q 018248 82 DDHENRY-LGELS---FRSEVKNVRLR------RDRIVVV-LNQKVYVYNFTD--LKLVDQIETV-VNPTGLCDVSQNAG 147 (359)
Q Consensus 82 d~~~~~~-~~~~~---~~~~v~~~~~~------~~~~~~~-~d~~i~i~d~~~--~~~~~~~~~~-~~~~~~~~~~~~~~ 147 (359)
|++..+- +..+. ...+|..++.- +.+.+++ .--.+..|++.- +.....++.. .+....++..+..+
T Consensus 264 D~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~l~f~ei~~s~~~~p~vlele~pG~cismqy~~~sn 343 (463)
T KOG1645|consen 264 DMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTVLQFYEIVFSAECLPCVLELEPPGICISMQYHGVSN 343 (463)
T ss_pred EccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeehhhhhhhhhccccCCCcccccCCCcceeeeeecCccc
Confidence 9876432 22222 12344443322 2233333 333444555421 1111112111 12111222222223
Q ss_pred ccEEEecCCCC-----ee--EEEEecCCeeeEEe-ecccc-c------ccEEEEccCCcEEEEE-eCCCCeEEEEEcCCC
Q 018248 148 PMVMACPGLLK-----GQ--VRVEDYGTKKSKYI-TAHAS-R------IASIAMTLDGRFVATA-SSKGTLIRVFNTMDG 211 (359)
Q Consensus 148 ~~~l~~~g~~d-----~~--v~~~~~~~~~~~~~-~~~~~-~------i~~~~~s~~~~~l~~~-~~dg~~i~iwd~~~~ 211 (359)
..++.+ -+.- .. .+++..++.++... ..+.+ . -..+.-.++.++++.- ..... +.+||..++
T Consensus 344 h~l~ty-Rs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd~tn~-lil~D~~s~ 421 (463)
T KOG1645|consen 344 HLLLTY-RSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVGDSTNE-LILQDPHSF 421 (463)
T ss_pred eEEEEe-cCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccccEEEEecCCcce-eEEeccchh
Confidence 322221 1100 00 12233333332221 11101 0 1112223455655544 44555 999999999
Q ss_pred cEEEEeecCCCCcceEEEEecC-C-CCEEEEEcCCCcEEEEEccC
Q 018248 212 SLLQEMRRGAERAEIYSLAFSS-N-AQWLAASSDKGTVHVFGLKV 254 (359)
Q Consensus 212 ~~~~~~~~~~~~~~i~~~~~s~-~-~~~l~~~~~dg~i~iw~~~~ 254 (359)
+.++++.. ..+|.+++... + +.+|++-+ |..++||..++
T Consensus 422 evvQ~l~~---~epv~Dicp~~~n~~syLa~LT-d~~v~Iyk~es 462 (463)
T KOG1645|consen 422 EVVQTLAL---SEPVLDICPNDTNGSSYLALLT-DDRVHIYKNES 462 (463)
T ss_pred heeeeccc---CcceeecceeecCCcchhhhee-cceEEEEecCC
Confidence 99999985 36888887653 3 34676665 45699987654
No 340
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=98.21 E-value=0.0033 Score=55.16 Aligned_cols=243 Identities=12% Similarity=0.085 Sum_probs=130.3
Q ss_pred ceEEEEEccCCCEEEEec--CCc----eEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCC-C------
Q 018248 8 TIHHLALNQDHGCFATGT--ETG----FRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPH-Q------ 74 (359)
Q Consensus 8 ~v~~~~~s~~g~~l~~~~--d~~----i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~-~------ 74 (359)
.+...++||||+++|.+- .|. ++++|+++++... ..+. ......+.|..+++.++....... .
T Consensus 125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~-d~i~---~~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~ 200 (414)
T PF02897_consen 125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLP-DGIE---NPKFSSVSWSDDGKGFFYTRFDEDQRTSDSGY 200 (414)
T ss_dssp EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEE-EEEE---EEESEEEEECTTSSEEEEEECSTTTSS-CCGC
T ss_pred EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcC-Cccc---ccccceEEEeCCCCEEEEEEeCcccccccCCC
Confidence 344688999999998764 343 9999999875442 2332 111223889888888877765431 2
Q ss_pred CCeEEEEECCCccE--Eeeec--cCcc-eeEEEEecceeEEE------ec-CeEEEEEcccc----eeeeeEeccCCCce
Q 018248 75 SNKVMIWDDHENRY--LGELS--FRSE-VKNVRLRRDRIVVV------LN-QKVYVYNFTDL----KLVDQIETVVNPTG 138 (359)
Q Consensus 75 d~~i~iwd~~~~~~--~~~~~--~~~~-v~~~~~~~~~~~~~------~d-~~i~i~d~~~~----~~~~~~~~~~~~~~ 138 (359)
...|+.|.+.+... ...+. .... ...+..++++++++ .+ ..+++.++..+ .....+......+.
T Consensus 201 ~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~ 280 (414)
T PF02897_consen 201 PRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVE 280 (414)
T ss_dssp CEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-E
T ss_pred CcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceE
Confidence 56688998877632 23333 2233 56788899998877 34 67888888664 23333333232222
Q ss_pred eeeeecCCCccEEEec-CCCCeeEEEEecCC-e---eeEEeecccccccEEEEccCCcEEEEE-eCCCC-eEEEEEcCCC
Q 018248 139 LCDVSQNAGPMVMACP-GLLKGQVRVEDYGT-K---KSKYITAHASRIASIAMTLDGRFVATA-SSKGT-LIRVFNTMDG 211 (359)
Q Consensus 139 ~~~~~~~~~~~~l~~~-g~~d~~v~~~~~~~-~---~~~~~~~~~~~i~~~~~s~~~~~l~~~-~~dg~-~i~iwd~~~~ 211 (359)
... ...++.+++.+. +...+.|..-+... . ....+..+...+.-..+...+.+|+.. ..++. .|+++++..+
T Consensus 281 ~~v-~~~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~~~~~~~l~v~~~~~~ 359 (414)
T PF02897_consen 281 YYV-DHHGDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLVLSYRENGSSRLRVYDLDDG 359 (414)
T ss_dssp EEE-EEETTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEEEEEEETTEEEEEEEETT-T
T ss_pred EEE-EccCCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECCEEEEEEEECCccEEEEEECCCC
Confidence 222 222444555442 12234444433332 2 122455555533333333444455444 33332 1889998745
Q ss_pred cEEEEeecCCCCcceEEEEecCCCCEEEE--Ec--CCCcEEEEEccCCC
Q 018248 212 SLLQEMRRGAERAEIYSLAFSSNAQWLAA--SS--DKGTVHVFGLKVDS 256 (359)
Q Consensus 212 ~~~~~~~~~~~~~~i~~~~~s~~~~~l~~--~~--~dg~i~iw~~~~~~ 256 (359)
.....+... ..+.|..+...+++..+.. .+ .-+++.-||+.+++
T Consensus 360 ~~~~~~~~p-~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~ 407 (414)
T PF02897_consen 360 KESREIPLP-EAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGE 407 (414)
T ss_dssp EEEEEEESS-SSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTC
T ss_pred cEEeeecCC-cceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCC
Confidence 555555543 3355677776666664432 22 23578888888876
No 341
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.20 E-value=2.3e-05 Score=70.29 Aligned_cols=115 Identities=16% Similarity=0.120 Sum_probs=85.9
Q ss_pred eeeeeecCCCccEEEec-CCCCeeEEEEecCCeeeEEeecccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcEEEE
Q 018248 138 GLCDVSQNAGPMVMACP-GLLKGQVRVEDYGTKKSKYITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQE 216 (359)
Q Consensus 138 ~~~~~~~~~~~~~l~~~-g~~d~~v~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~~~~ 216 (359)
+...|+|....+.+|+- ....|.|.|+..++.+-+... ..-.+++++|+|..-.|+.|=.-|. +.+|...+.+.- +
T Consensus 19 ti~SWHPsePlfAVA~fS~er~GSVtIfadtGEPqr~Vt-~P~hatSLCWHpe~~vLa~gwe~g~-~~v~~~~~~e~h-t 95 (1416)
T KOG3617|consen 19 TISSWHPSEPLFAVASFSPERGGSVTIFADTGEPQRDVT-YPVHATSLCWHPEEFVLAQGWEMGV-SDVQKTNTTETH-T 95 (1416)
T ss_pred cccccCCCCceeEEEEecCCCCceEEEEecCCCCCcccc-cceehhhhccChHHHHHhhccccce-eEEEecCCceee-e
Confidence 45677887766555432 224678888887776544332 1234577999999989999999999 999987655443 3
Q ss_pred eecCCCCcceEEEEecCCCCEEEEEcCCCcEEEEEccCCC
Q 018248 217 MRRGAERAEIYSLAFSSNAQWLAASSDKGTVHVFGLKVDS 256 (359)
Q Consensus 217 ~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~ 256 (359)
.. ..|+.+|..+.|||+|..|+++..-|.|.+|......
T Consensus 96 v~-~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~~g 134 (1416)
T KOG3617|consen 96 VV-ETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDVIG 134 (1416)
T ss_pred ec-cCCCCCceeEEecCCCCeEEEcCCCceeEEEEeeecc
Confidence 33 2388999999999999999999999999999998554
No 342
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=98.20 E-value=0.0019 Score=53.20 Aligned_cols=197 Identities=16% Similarity=0.235 Sum_probs=117.9
Q ss_pred CCceEEEEEccCCCEEEEecCCceEEEEcCCCcceeee-------------ecccCCCCceeEEE--EeccCCEEEEEec
Q 018248 6 PITIHHLALNQDHGCFATGTETGFRVYLSDPYKPIMRR-------------DFDRNPRGGTQLVS--MLFRSNIICLVNS 70 (359)
Q Consensus 6 ~~~v~~~~~s~~g~~l~~~~d~~i~iw~~~~~~~~~~~-------------~~~~~h~~~v~~~~--~~~~~~~~~~~~~ 70 (359)
..+|..+...|+-+.|++-+|+.+.+++++........ .+ .....+...+ -...+...+++.
T Consensus 35 ~~~I~ql~vl~~~~~llvLsd~~l~~~~L~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~f~~~~~~~~~~~L~va- 111 (275)
T PF00780_consen 35 LSSITQLSVLPELNLLLVLSDGQLYVYDLDSLEPVSTSAPLAFPKSRSLPTKL--PETKGVSFFAVNGGHEGSRRLCVA- 111 (275)
T ss_pred cceEEEEEEecccCEEEEEcCCccEEEEchhhccccccccccccccccccccc--cccCCeeEEeeccccccceEEEEE-
Confidence 34589999999988888888999999998754433211 11 1233444444 112333334444
Q ss_pred CCCCCCeEEEEECCCc-----cEEeeeccCcceeEEEEecceeEEEecCeEEEEEcccceeeeeEeccC-----------
Q 018248 71 GPHQSNKVMIWDDHEN-----RYLGELSFRSEVKNVRLRRDRIVVVLNQKVYVYNFTDLKLVDQIETVV----------- 134 (359)
Q Consensus 71 ~~~~d~~i~iwd~~~~-----~~~~~~~~~~~v~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~----------- 134 (359)
...+|.+|..... +..+++..+..+.+++|.++...+...+...+.|+.++.....+....
T Consensus 112 ---~kk~i~i~~~~~~~~~f~~~~ke~~lp~~~~~i~~~~~~i~v~~~~~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~ 188 (275)
T PF00780_consen 112 ---VKKKILIYEWNDPRNSFSKLLKEISLPDPPSSIAFLGNKICVGTSKGFYLIDLNTGSPSELLDPSDSSSSFKSRNSS 188 (275)
T ss_pred ---ECCEEEEEEEECCcccccceeEEEEcCCCcEEEEEeCCEEEEEeCCceEEEecCCCCceEEeCccCCcchhhhcccC
Confidence 3468888876542 566777788999999999666555578889999998665544332211
Q ss_pred -CCceeeeeecCCCccEEEecCCCCeeEEEEecCCeeeE--EeecccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCC
Q 018248 135 -NPTGLCDVSQNAGPMVMACPGLLKGQVRVEDYGTKKSK--YITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDG 211 (359)
Q Consensus 135 -~~~~~~~~~~~~~~~~l~~~g~~d~~v~~~~~~~~~~~--~~~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~ 211 (359)
.+.....+ +.+. +|++ .+..-..-+..+...+ .+.- ...+.++++. ..+|+..+. +. |.||++.++
T Consensus 189 ~~~~~~~~~--~~~e-~Ll~---~~~~g~fv~~~G~~~r~~~i~W-~~~p~~~~~~--~pyli~~~~-~~-iEV~~~~~~ 257 (275)
T PF00780_consen 189 SKPLGIFQL--SDNE-FLLC---YDNIGVFVNKNGEPSRKSTIQW-SSAPQSVAYS--SPYLIAFSS-NS-IEVRSLETG 257 (275)
T ss_pred CCceEEEEe--CCce-EEEE---ecceEEEEcCCCCcCcccEEEc-CCchhEEEEE--CCEEEEECC-CE-EEEEECcCC
Confidence 11222222 2223 3443 1322222344454333 2222 3355666663 457776665 45 999999999
Q ss_pred cEEEEeec
Q 018248 212 SLLQEMRR 219 (359)
Q Consensus 212 ~~~~~~~~ 219 (359)
+.++.+..
T Consensus 258 ~lvQ~i~~ 265 (275)
T PF00780_consen 258 ELVQTIPL 265 (275)
T ss_pred cEEEEEEC
Confidence 99988874
No 343
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=98.20 E-value=0.0022 Score=53.03 Aligned_cols=212 Identities=14% Similarity=0.079 Sum_probs=125.2
Q ss_pred EEccCCCEEEEec--CCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEECCCccEEe
Q 018248 13 ALNQDHGCFATGT--ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDDHENRYLG 90 (359)
Q Consensus 13 ~~s~~g~~l~~~~--d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~ 90 (359)
.|.++...|.-.. .+.|.-|+.++++.... .. ...+......- ....++++ +..+.+++.+++..+.
T Consensus 31 ~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~~~-~~----p~~~~~~~~~d-~~g~Lv~~-----~~g~~~~~~~~~~~~t 99 (307)
T COG3386 31 VWDPDRGALLWVDILGGRIHRLDPETGKKRVF-PS----PGGFSSGALID-AGGRLIAC-----EHGVRLLDPDTGGKIT 99 (307)
T ss_pred cCcCCCCEEEEEeCCCCeEEEecCCcCceEEE-EC----CCCcccceeec-CCCeEEEE-----ccccEEEeccCCceeE
Confidence 4677777666655 77788888875543322 21 33333333332 33333333 3567777776665533
Q ss_pred eec------cCcceeEEEEecceeEEE---e-----------cCeEEEEEcccceeeeeEeccCCCceeeeeecCCCccE
Q 018248 91 ELS------FRSEVKNVRLRRDRIVVV---L-----------NQKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAGPMV 150 (359)
Q Consensus 91 ~~~------~~~~v~~~~~~~~~~~~~---~-----------d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (359)
.+. .....++....|+|.+.+ . -|.++.+|. .+..++.+..+-...+.++|+|+++.++
T Consensus 100 ~~~~~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~~~~NGla~SpDg~tly 178 (307)
T COG3386 100 LLAEPEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDLTIPNGLAFSPDGKTLY 178 (307)
T ss_pred EeccccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCcEEecCceEECCCCCEEE
Confidence 332 124456788888888777 2 123445553 4555555444344446799999999766
Q ss_pred EEecCCCCeeEEEEecC---C----e-eeEEeecccccccEEEEccCCcEEEEEeCCC-CeEEEEEcCCCcEEEEeecCC
Q 018248 151 MACPGLLKGQVRVEDYG---T----K-KSKYITAHASRIASIAMTLDGRFVATASSKG-TLIRVFNTMDGSLLQEMRRGA 221 (359)
Q Consensus 151 l~~~g~~d~~v~~~~~~---~----~-~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg-~~i~iwd~~~~~~~~~~~~~~ 221 (359)
++= +..+.|.-+... + + ....+....+..-.++...+|.+-+++-..| . |.+|+.. |+++..+...
T Consensus 179 ~aD--T~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~-v~~~~pd-G~l~~~i~lP- 253 (307)
T COG3386 179 VAD--TPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGR-VVRFNPD-GKLLGEIKLP- 253 (307)
T ss_pred EEe--CCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCce-EEEECCC-CcEEEEEECC-
Confidence 653 344566654333 1 1 1122233456677788888898776555554 6 9999976 9999888863
Q ss_pred CCcceEEEEec-CCCCEEEEEc
Q 018248 222 ERAEIYSLAFS-SNAQWLAASS 242 (359)
Q Consensus 222 ~~~~i~~~~~s-~~~~~l~~~~ 242 (359)
...+++++|- |+.+.|...+
T Consensus 254 -~~~~t~~~FgG~~~~~L~iTs 274 (307)
T COG3386 254 -VKRPTNPAFGGPDLNTLYITS 274 (307)
T ss_pred -CCCCccceEeCCCcCEEEEEe
Confidence 2577888885 4555554433
No 344
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.16 E-value=0.00021 Score=61.84 Aligned_cols=76 Identities=17% Similarity=0.216 Sum_probs=60.3
Q ss_pred cCCCceeeeeecCCCccEEEecCCCCeeEEEEecCCeeeEEeecccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCc
Q 018248 133 VVNPTGLCDVSQNAGPMVMACPGLLKGQVRVEDYGTKKSKYITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGS 212 (359)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~l~~~g~~d~~v~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~ 212 (359)
....+.+++++|+.+.+++ |+.||.|.+|+...+..... ...-.++.++|+|+|..+++|+..|. +.+||+.-..
T Consensus 258 L~s~v~~ca~sp~E~kLvl---GC~DgSiiLyD~~~~~t~~~-ka~~~P~~iaWHp~gai~~V~s~qGe-lQ~FD~ALsp 332 (545)
T PF11768_consen 258 LPSQVICCARSPSEDKLVL---GCEDGSIILYDTTRGVTLLA-KAEFIPTLIAWHPDGAIFVVGSEQGE-LQCFDMALSP 332 (545)
T ss_pred cCCcceEEecCcccceEEE---EecCCeEEEEEcCCCeeeee-eecccceEEEEcCCCcEEEEEcCCce-EEEEEeecCc
Confidence 4556788999999887444 55899999998876654443 34566789999999999999999999 9999986544
Q ss_pred E
Q 018248 213 L 213 (359)
Q Consensus 213 ~ 213 (359)
.
T Consensus 333 i 333 (545)
T PF11768_consen 333 I 333 (545)
T ss_pred c
Confidence 3
No 345
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=98.15 E-value=0.0041 Score=54.08 Aligned_cols=168 Identities=14% Similarity=0.158 Sum_probs=91.2
Q ss_pred eEEEEECCCccEEeeec-cCcceeEEEEecceeEEE--ecCeEEEEEcccceeeeeEec--cCCCceee---eeecCCCc
Q 018248 77 KVMIWDDHENRYLGELS-FRSEVKNVRLRRDRIVVV--LNQKVYVYNFTDLKLVDQIET--VVNPTGLC---DVSQNAGP 148 (359)
Q Consensus 77 ~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~--~d~~i~i~d~~~~~~~~~~~~--~~~~~~~~---~~~~~~~~ 148 (359)
.|.+|+ ..|+.+..+. ..+.+.++.|+.+..+++ .||.+++||+. |+....+.. ....+..+ +....+.+
T Consensus 62 ~I~iys-~sG~ll~~i~w~~~~iv~~~wt~~e~LvvV~~dG~v~vy~~~-G~~~fsl~~~i~~~~v~e~~i~~~~~~~~G 139 (410)
T PF04841_consen 62 SIQIYS-SSGKLLSSIPWDSGRIVGMGWTDDEELVVVQSDGTVRVYDLF-GEFQFSLGEEIEEEKVLECRIFAIWFYKNG 139 (410)
T ss_pred EEEEEC-CCCCEeEEEEECCCCEEEEEECCCCeEEEEEcCCEEEEEeCC-CceeechhhhccccCcccccccccccCCCC
Confidence 699999 6788888877 448999999999887777 99999999985 333111110 11111111 11122244
Q ss_pred cEEEecCCCCeeEEE-EecCCe-eeEEee---cccc------ccc-EEEEccCCcEEEEEeCCCCeEEEEEcCCCcEEEE
Q 018248 149 MVMACPGLLKGQVRV-EDYGTK-KSKYIT---AHAS------RIA-SIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQE 216 (359)
Q Consensus 149 ~~l~~~g~~d~~v~~-~~~~~~-~~~~~~---~~~~------~i~-~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~~~~ 216 (359)
+++.+ .++.+.+ .+.... ..+.+. .... ... ...++.+....+....++. +.+.+-...+.
T Consensus 140 ivvLt---~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~-i~~i~~~~~~~--- 212 (410)
T PF04841_consen 140 IVVLT---GNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGET-IYIIDENSFKQ--- 212 (410)
T ss_pred EEEEC---CCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCE-EEEEEcccccc---
Confidence 44443 2445554 332221 111111 1000 000 0223334433333334444 44333221111
Q ss_pred eecCCCCcceEEEEecCCCCEEEEEcCCCcEEEEEccCCC
Q 018248 217 MRRGAERAEIYSLAFSSNAQWLAASSDKGTVHVFGLKVDS 256 (359)
Q Consensus 217 ~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~ 256 (359)
+. ..+++..++.||+|++||.-..+|.+.|...+-.+
T Consensus 213 i~---~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~ 249 (410)
T PF04841_consen 213 ID---SDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSE 249 (410)
T ss_pred cc---CCCCeEEEEECCCCCEEEEEECCCCEEEEECcccc
Confidence 11 23589999999999999999999998888765443
No 346
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=98.09 E-value=0.0056 Score=53.41 Aligned_cols=214 Identities=14% Similarity=0.161 Sum_probs=112.5
Q ss_pred CceeEEEEeccCCEEEEEecCCCCCCeEEEEECCCccEEeeeccCcceeEEEEecceeEEE--ecCeEEEEEcccceeee
Q 018248 51 GGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDDHENRYLGELSFRSEVKNVRLRRDRIVVV--LNQKVYVYNFTDLKLVD 128 (359)
Q Consensus 51 ~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~--~d~~i~i~d~~~~~~~~ 128 (359)
-....++.+|+++.+++++ +|...++.....+... .+.-..+.|.+.+.+.+ ..++|.++.--..+...
T Consensus 33 ~~p~~ls~npngr~v~V~g-----~geY~iyt~~~~r~k~----~G~g~~~vw~~~n~yAv~~~~~~I~I~kn~~~~~~k 103 (443)
T PF04053_consen 33 IYPQSLSHNPNGRFVLVCG-----DGEYEIYTALAWRNKA----FGSGLSFVWSSRNRYAVLESSSTIKIYKNFKNEVVK 103 (443)
T ss_dssp S--SEEEE-TTSSEEEEEE-----TTEEEEEETTTTEEEE----EEE-SEEEE-TSSEEEEE-TTS-EEEEETTEE-TT-
T ss_pred cCCeeEEECCCCCEEEEEc-----CCEEEEEEccCCcccc----cCceeEEEEecCccEEEEECCCeEEEEEcCccccce
Confidence 3456778888888888855 6888888733322222 34566788999888777 56889997432333323
Q ss_pred eEeccCCCceeeeeecCCCccEEEecCCCCeeEEEEecCC-eeeEEeecccccccEEEEccCCcEEEEEeCCCCeEEEEE
Q 018248 129 QIETVVNPTGLCDVSQNAGPMVMACPGLLKGQVRVEDYGT-KKSKYITAHASRIASIAMTLDGRFVATASSKGTLIRVFN 207 (359)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~v~~~~~~~-~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd 207 (359)
.+.... .+-.+-. |. + |+.. .++.|.+++... +.++.+... +|..+.|+++|.+++..+.+. +.|++
T Consensus 104 ~i~~~~---~~~~If~-G~-L-L~~~--~~~~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~~g~~val~t~~~--i~il~ 171 (443)
T PF04053_consen 104 SIKLPF---SVEKIFG-GN-L-LGVK--SSDFICFYDWETGKLIRRIDVS--AVKYVIWSDDGELVALVTKDS--IYILK 171 (443)
T ss_dssp ----SS----EEEEE--SS-S-EEEE--ETTEEEEE-TTT--EEEEESS---E-EEEEE-TTSSEEEEE-S-S--EEEEE
T ss_pred EEcCCc---ccceEEc-Cc-E-EEEE--CCCCEEEEEhhHcceeeEEecC--CCcEEEEECCCCEEEEEeCCe--EEEEE
Confidence 443322 1222222 43 3 4332 244788877764 556666533 389999999999999998775 77776
Q ss_pred cCCC--------------cEEEEeecCCCCcceEEEEecCCCCEEEEEcCCCcEEEEEccCCCCCCCCCccccCCCCCcc
Q 018248 208 TMDG--------------SLLQEMRRGAERAEIYSLAFSSNAQWLAASSDKGTVHVFGLKVDSGSPGTSKLHSASEPNLS 273 (359)
Q Consensus 208 ~~~~--------------~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~ 273 (359)
.... ..+.++ ...|.+..|..| .++-.+.. .++. +-.++..
T Consensus 172 ~~~~~~~~~~~~g~e~~f~~~~E~-----~~~IkSg~W~~d--~fiYtT~~-~lkY--l~~Ge~~--------------- 226 (443)
T PF04053_consen 172 YNLEAVAAIPEEGVEDAFELIHEI-----SERIKSGCWVED--CFIYTTSN-HLKY--LVNGETG--------------- 226 (443)
T ss_dssp E-HHHHHHBTTTB-GGGEEEEEEE------S--SEEEEETT--EEEEE-TT-EEEE--EETTEEE---------------
T ss_pred ecchhcccccccCchhceEEEEEe-----cceeEEEEEEcC--EEEEEcCC-eEEE--EEcCCcc---------------
Confidence 4322 222222 247888888755 44444433 5665 4444310
Q ss_pred CCCCCceeeeeEeeeecceEEecccceeEEeecCCcEEEeeecccCCEEEEEecCCeEEEEEeCC
Q 018248 274 SKNSSAISSFRFIRGVLPKYFSSKWSMAQFRLPENVQYLVGFGRQNNTIVIVGLDGSYYKCEFDP 338 (359)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~ 338 (359)
. +..-..++..+...|+.+.|+....|+.+..+.++.
T Consensus 227 -----------~-----------------i~~ld~~~yllgy~~~~~~ly~~Dr~~~v~~~~ld~ 263 (443)
T PF04053_consen 227 -----------I-----------------IAHLDKPLYLLGYLPKENRLYLIDRDGNVISYELDL 263 (443)
T ss_dssp -----------E-----------------EEE-SS--EEEEEETTTTEEEEE-TT--EEEEE--H
T ss_pred -----------e-----------------EEEcCCceEEEEEEccCCEEEEEECCCCEEEEEECH
Confidence 0 111123567788888778999999999999998875
No 347
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.08 E-value=0.0028 Score=49.42 Aligned_cols=68 Identities=9% Similarity=0.019 Sum_probs=49.2
Q ss_pred CCEEEEec-CCceEEEEcCCCcceeeeecccCCCCceeEE-EEeccCCEEEEEecCCCCCCeEEEEECCCccEEeeec
Q 018248 18 HGCFATGT-ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLV-SMLFRSNIICLVNSGPHQSNKVMIWDDHENRYLGELS 93 (359)
Q Consensus 18 g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~-~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~ 93 (359)
|++++.|. ++.+++.+.+++.+...... .+.|.+- .+.+++..+...+ .|++....|.++..++...+
T Consensus 63 gdfVV~GCy~g~lYfl~~~tGs~~w~f~~----~~~vk~~a~~d~~~glIycgs----hd~~~yalD~~~~~cVyksk 132 (354)
T KOG4649|consen 63 GDFVVLGCYSGGLYFLCVKTGSQIWNFVI----LETVKVRAQCDFDGGLIYCGS----HDGNFYALDPKTYGCVYKSK 132 (354)
T ss_pred CCEEEEEEccCcEEEEEecchhheeeeee----hhhhccceEEcCCCceEEEec----CCCcEEEecccccceEEecc
Confidence 56788888 99999999999877766554 3444433 3445666655555 78999999999888777765
No 348
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.07 E-value=3.9e-06 Score=75.38 Aligned_cols=184 Identities=7% Similarity=0.043 Sum_probs=128.0
Q ss_pred CCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEECCCccEEeeec-cCcceeEEEEecceeEEE-----ecCeEEEEEc
Q 018248 48 NPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDDHENRYLGELS-FRSEVKNVRLRRDRIVVV-----LNQKVYVYNF 121 (359)
Q Consensus 48 ~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~-----~d~~i~i~d~ 121 (359)
.|....++++|+-..+.+++.+ ..|.|+++++.+|....... |...|+-+.-+.+|...+ ..--..+|++
T Consensus 1099 d~~~~fTc~afs~~~~hL~vG~----~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~~ 1174 (1516)
T KOG1832|consen 1099 DETALFTCIAFSGGTNHLAVGS----HAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWDA 1174 (1516)
T ss_pred ccccceeeEEeecCCceEEeee----ccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHHHhcc
Confidence 4667778888888888888877 67999999999999999888 999999999999987666 2235678998
Q ss_pred c-cceeeeeEeccCCCceeeeeecCCCccEEEecCCCCeeEEEEecCC-eeeEE-e---ecccccccEEEEccCCcEEEE
Q 018248 122 T-DLKLVDQIETVVNPTGLCDVSQNAGPMVMACPGLLKGQVRVEDYGT-KKSKY-I---TAHASRIASIAMTLDGRFVAT 195 (359)
Q Consensus 122 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~v~~~~~~~-~~~~~-~---~~~~~~i~~~~~s~~~~~l~~ 195 (359)
. .+.+.+.+.. ..++.|+..-...++.+ ......+|+... .++.+ + .+....-++..|+|+..++.
T Consensus 1175 ~s~~~~~Hsf~e----d~~vkFsn~~q~r~~gt---~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIl- 1246 (1516)
T KOG1832|consen 1175 SSTGGPRHSFDE----DKAVKFSNSLQFRALGT---EADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLIL- 1246 (1516)
T ss_pred ccccCccccccc----cceeehhhhHHHHHhcc---cccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEe-
Confidence 3 4555555542 24567776644433433 334566666554 33333 2 22233447889999998775
Q ss_pred EeCCCCeEEEEEcCCCcEEEEeecCCCCcceEEEEecCCCCEEEEEcCCCcEEEEEccCCC
Q 018248 196 ASSKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSNAQWLAASSDKGTVHVFGLKVDS 256 (359)
Q Consensus 196 ~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~ 256 (359)
.||. +||.+..+.++.|.. .. .-..=.|+|.|..++.-+ .|||+++-+
T Consensus 1247 --ndGv---LWDvR~~~aIh~FD~--ft-~~~~G~FHP~g~eVIINS-----EIwD~RTF~ 1294 (1516)
T KOG1832|consen 1247 --NDGV---LWDVRIPEAIHRFDQ--FT-DYGGGGFHPSGNEVIINS-----EIWDMRTFK 1294 (1516)
T ss_pred --eCce---eeeeccHHHHhhhhh--he-ecccccccCCCceEEeec-----hhhhhHHHH
Confidence 5664 899998888877764 21 122346999999887654 689998865
No 349
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.05 E-value=0.0082 Score=53.74 Aligned_cols=227 Identities=14% Similarity=0.105 Sum_probs=125.6
Q ss_pred CEEEEec-CCceEEEEcCCCcceeeeecccCCC---CceeE-EEEeccCCEEEEEecCCC-----CCCeEEEEECCCccE
Q 018248 19 GCFATGT-ETGFRVYLSDPYKPIMRRDFDRNPR---GGTQL-VSMLFRSNIICLVNSGPH-----QSNKVMIWDDHENRY 88 (359)
Q Consensus 19 ~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~h~---~~v~~-~~~~~~~~~~~~~~~~~~-----~d~~i~iwd~~~~~~ 88 (359)
..++.++ ++.|.-+|.++++........ .+. ..+.. ..+ .+..+++.+.+.. .++.+..+|..+|+.
T Consensus 111 ~~V~v~~~~g~v~AlD~~TG~~~W~~~~~-~~~~~~~~i~ssP~v--~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~ 187 (488)
T cd00216 111 RKVFFGTFDGRLVALDAETGKQVWKFGNN-DQVPPGYTMTGAPTI--VKKLVIIGSSGAEFFACGVRGALRAYDVETGKL 187 (488)
T ss_pred CeEEEecCCCeEEEEECCCCCEeeeecCC-CCcCcceEecCCCEE--ECCEEEEeccccccccCCCCcEEEEEECCCCce
Confidence 5666666 999999999999888777653 110 00111 111 1233333321100 358899999999998
Q ss_pred EeeeccC-cc--------------------e-eEEEEec-ceeEEE--ecC------------------eEEEEEcccce
Q 018248 89 LGELSFR-SE--------------------V-KNVRLRR-DRIVVV--LNQ------------------KVYVYNFTDLK 125 (359)
Q Consensus 89 ~~~~~~~-~~--------------------v-~~~~~~~-~~~~~~--~d~------------------~i~i~d~~~~~ 125 (359)
+-.++.. .. + ....+.+ .+.+++ .++ .|.-+|..+++
T Consensus 188 ~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~ 267 (488)
T cd00216 188 LWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGK 267 (488)
T ss_pred eeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCC
Confidence 8877521 10 1 1233333 344444 333 79999999999
Q ss_pred eeeeEeccCCCce------eeeee----cCCCccEEEecCCCCeeEEE-EecCCeeeEEeecccccccEEEEccCCcEEE
Q 018248 126 LVDQIETVVNPTG------LCDVS----QNAGPMVMACPGLLKGQVRV-EDYGTKKSKYITAHASRIASIAMTLDGRFVA 194 (359)
Q Consensus 126 ~~~~~~~~~~~~~------~~~~~----~~~~~~~l~~~g~~d~~v~~-~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~ 194 (359)
.+..++....... ...+. -++....+++.+..+|.+.. +..+++.+-..... ...++.+| + .+.
T Consensus 268 ~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~---~~~~~~~~-~-~vy 342 (488)
T cd00216 268 VKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEV---EQPMAYDP-G-LVY 342 (488)
T ss_pred EEEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEee---ccccccCC-c-eEE
Confidence 9888754322111 01111 12221122333556887777 55556555443221 11233444 2 222
Q ss_pred EE------------------eCCCCeEEEEEcCCCcEEEEeecCCCC------cce--EEEEecCCCCEEEEEcCCCcEE
Q 018248 195 TA------------------SSKGTLIRVFNTMDGSLLQEMRRGAER------AEI--YSLAFSSNAQWLAASSDKGTVH 248 (359)
Q Consensus 195 ~~------------------~~dg~~i~iwd~~~~~~~~~~~~~~~~------~~i--~~~~~s~~~~~l~~~~~dg~i~ 248 (359)
.+ ..+|. +.-.|+.+|+.+-+.....+. .+. ..+.. .+..|+.++.||.|+
T Consensus 343 v~~~~~~~~~~~~~~~~~~~~~~G~-l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~--~g~~v~~g~~dG~l~ 419 (488)
T cd00216 343 LGAFHIPLGLPPQKKKRCKKPGKGG-LAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLAT--AGNLVFAGAADGYFR 419 (488)
T ss_pred EccccccccCcccccCCCCCCCceE-EEEEeCCCCcEeeEeeCCccccccccCCcccCcceEe--cCCeEEEECCCCeEE
Confidence 21 23567 888899999887776543111 111 11222 467888889999999
Q ss_pred EEEccCCC
Q 018248 249 VFGLKVDS 256 (359)
Q Consensus 249 iw~~~~~~ 256 (359)
.+|.++++
T Consensus 420 ald~~tG~ 427 (488)
T cd00216 420 AFDATTGK 427 (488)
T ss_pred EEECCCCc
Confidence 99999987
No 350
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.05 E-value=0.0047 Score=50.85 Aligned_cols=173 Identities=18% Similarity=0.151 Sum_probs=99.2
Q ss_pred CceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCC------CCCeEEEEECCCccEEeeeccCc----
Q 018248 27 TGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPH------QSNKVMIWDDHENRYLGELSFRS---- 96 (359)
Q Consensus 27 ~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~------~d~~i~iwd~~~~~~~~~~~~~~---- 96 (359)
+.+.++|.++++.+- .+. .+-...+.++++++.+..+..--. ..-.|.+||..+-+...++..+.
T Consensus 17 ~rv~viD~d~~k~lG--mi~---~g~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~ 91 (342)
T PF06433_consen 17 SRVYVIDADSGKLLG--MID---TGFLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRA 91 (342)
T ss_dssp EEEEEEETTTTEEEE--EEE---EESSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B-
T ss_pred ceEEEEECCCCcEEE--Eee---cccCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchh
Confidence 468899988765443 332 333444667888887765432100 34568999999988877765221
Q ss_pred ----ceeEEEEecceeEEE-----ecCeEEEEEcccceeeeeEeccCCCceeeeeecCCC-ccEEEecCCCCeeEEE--E
Q 018248 97 ----EVKNVRLRRDRIVVV-----LNQKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAG-PMVMACPGLLKGQVRV--E 164 (359)
Q Consensus 97 ----~v~~~~~~~~~~~~~-----~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~g~~d~~v~~--~ 164 (359)
....++++.+++++. --..|.|.|+...+.+..+..+. |.-+-|.++ .+..+| .||.+.- .
T Consensus 92 ~~~~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PG----C~~iyP~~~~~F~~lC---~DGsl~~v~L 164 (342)
T PF06433_consen 92 QVVPYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPG----CWLIYPSGNRGFSMLC---GDGSLLTVTL 164 (342)
T ss_dssp -BS--GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTS----EEEEEEEETTEEEEEE---TTSCEEEEEE
T ss_pred eecccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCCC----EEEEEecCCCceEEEe---cCCceEEEEE
Confidence 123467788888776 45689999998888888887543 333334443 333333 3666555 4
Q ss_pred ecCCeeeEEe----ecccc-cccEEEEccCCcEEEEEeCCCCeEEEEEcCCCc
Q 018248 165 DYGTKKSKYI----TAHAS-RIASIAMTLDGRFVATASSKGTLIRVFNTMDGS 212 (359)
Q Consensus 165 ~~~~~~~~~~----~~~~~-~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~ 212 (359)
+..++..+.. ..... ....-++...+..++--+.+|. |+--|+....
T Consensus 165 d~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~-v~~~dlsg~~ 216 (342)
T PF06433_consen 165 DADGKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGN-VYSADLSGDS 216 (342)
T ss_dssp TSTSSEEEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSE-EEEEEETTSS
T ss_pred CCCCCEeEeeccccCCCCcccccccceECCCCeEEEEecCCE-EEEEeccCCc
Confidence 4445443221 11122 2233445445544555778888 8888876554
No 351
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.97 E-value=0.0017 Score=60.01 Aligned_cols=133 Identities=17% Similarity=0.252 Sum_probs=90.1
Q ss_pred ecCeEEEEEcccceeeeeEeccCCCceeeeeecCC-------CccEEEecCCCCeeEEEEecCCee--eEEee----ccc
Q 018248 112 LNQKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNA-------GPMVMACPGLLKGQVRVEDYGTKK--SKYIT----AHA 178 (359)
Q Consensus 112 ~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~l~~~g~~d~~v~~~~~~~~~--~~~~~----~~~ 178 (359)
....|+-.|++.|+.+..+..+... .+..+.|+. ...++.. .++.+..|+.+... +..-. ...
T Consensus 502 ~~~~ly~mDLe~GKVV~eW~~~~~~-~v~~~~p~~K~aqlt~e~tflGl---s~n~lfriDpR~~~~k~v~~~~k~Y~~~ 577 (794)
T PF08553_consen 502 NPNKLYKMDLERGKVVEEWKVHDDI-PVVDIAPDSKFAQLTNEQTFLGL---SDNSLFRIDPRLSGNKLVDSQSKQYSSK 577 (794)
T ss_pred CCCceEEEecCCCcEEEEeecCCCc-ceeEecccccccccCCCceEEEE---CCCceEEeccCCCCCceeeccccccccC
Confidence 4578999999999999999886643 356666653 3334433 45566666655422 21111 234
Q ss_pred ccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcEEEEeecCCCCcceEEEEecCCCCEEEEEcCCCcEEEEEcc
Q 018248 179 SRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSNAQWLAASSDKGTVHVFGLK 253 (359)
Q Consensus 179 ~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~ 253 (359)
....|++-+.+| +||+|+.+|. ||+||- .|..-++.-.+ -..+|..|..+.||++|++.+ +..+.+++..
T Consensus 578 ~~Fs~~aTt~~G-~iavgs~~G~-IRLyd~-~g~~AKT~lp~-lG~pI~~iDvt~DGkwilaTc-~tyLlLi~t~ 647 (794)
T PF08553_consen 578 NNFSCFATTEDG-YIAVGSNKGD-IRLYDR-LGKRAKTALPG-LGDPIIGIDVTADGKWILATC-KTYLLLIDTL 647 (794)
T ss_pred CCceEEEecCCc-eEEEEeCCCc-EEeecc-cchhhhhcCCC-CCCCeeEEEecCCCcEEEEee-cceEEEEEEe
Confidence 567788877777 6899999999 999994 44333332222 347999999999999988665 4568888875
No 352
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.96 E-value=0.0015 Score=44.03 Aligned_cols=67 Identities=22% Similarity=0.310 Sum_probs=50.3
Q ss_pred ccEEEEcc---CC-cEEEEEeCCCCeEEEEEcCCCcEEEEeecCCCCcceEEEEecCCCCEEEEEcCCCcEEEEEccC
Q 018248 181 IASIAMTL---DG-RFVATASSKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSNAQWLAASSDKGTVHVFGLKV 254 (359)
Q Consensus 181 i~~~~~s~---~~-~~l~~~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~ 254 (359)
|+++++.. || +.|++|+.|.. |++|+ ..+.+.++.. ...|++++-... ..++.+-.+|+|-+|+-..
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~-IRvf~--~~e~~~Ei~e---~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~~ 72 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFE-IRVFK--GDEIVAEITE---TDKVTSLCSLGG-GRFAYALANGTVGVYDRSQ 72 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcE-EEEEe--CCcEEEEEec---ccceEEEEEcCC-CEEEEEecCCEEEEEeCcc
Confidence 55666654 33 48999999999 99997 5577888874 468888887766 5677888899998887644
No 353
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.96 E-value=0.00015 Score=59.51 Aligned_cols=90 Identities=18% Similarity=0.269 Sum_probs=74.1
Q ss_pred EecCCeeeEEeecccccccEEEEccCCc-EEEEEeCCCCeEEEEEcCCCcEEEEeecCCCCcceEEEEecCCC-CEEEEE
Q 018248 164 EDYGTKKSKYITAHASRIASIAMTLDGR-FVATASSKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSNA-QWLAAS 241 (359)
Q Consensus 164 ~~~~~~~~~~~~~~~~~i~~~~~s~~~~-~l~~~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~-~~l~~~ 241 (359)
...+.+....+..+...|..++|||..+ ++..++.+.. |+|.|+++...+..+.. + ..+++++|.-|. .+|..|
T Consensus 179 ~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nk-iki~dlet~~~vssy~a--~-~~~wSC~wDlde~h~IYaG 254 (463)
T KOG1645|consen 179 ESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNK-IKIMDLETSCVVSSYIA--Y-NQIWSCCWDLDERHVIYAG 254 (463)
T ss_pred ccCCcchhhcccccchhhhhhccCccccceeeeeccCce-EEEEecccceeeeheec--c-CCceeeeeccCCcceeEEe
Confidence 4444455566677888999999999888 7788888988 99999999988888876 3 689999999765 467788
Q ss_pred cCCCcEEEEEccCCCC
Q 018248 242 SDKGTVHVFGLKVDSG 257 (359)
Q Consensus 242 ~~dg~i~iw~~~~~~~ 257 (359)
-..|.|.|||++..+.
T Consensus 255 l~nG~VlvyD~R~~~~ 270 (463)
T KOG1645|consen 255 LQNGMVLVYDMRQPEG 270 (463)
T ss_pred ccCceEEEEEccCCCc
Confidence 8899999999998763
No 354
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.86 E-value=5.1e-06 Score=71.92 Aligned_cols=200 Identities=12% Similarity=0.184 Sum_probs=118.7
Q ss_pred CCceeEEEEeccCCEEEEEecCCCCCCeEEEEECCCccEE-eee--ccCcceeEEEEecc-eeEEE-------ecCeEEE
Q 018248 50 RGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDDHENRYL-GEL--SFRSEVKNVRLRRD-RIVVV-------LNQKVYV 118 (359)
Q Consensus 50 ~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~-~~~--~~~~~v~~~~~~~~-~~~~~-------~d~~i~i 118 (359)
...+.+++..++.+..+++.|. .+|.|.+-.++...-- .++ ++..+.++++|++- ...++ .|..+.|
T Consensus 56 tqy~kcva~~y~~d~cIlavG~--atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~I 133 (783)
T KOG1008|consen 56 TQYVKCVASFYGNDRCILAVGS--ATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKI 133 (783)
T ss_pred CCCceeehhhcCCchhhhhhcc--ccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccc
Confidence 3456777777666533333333 5699988876554222 222 26778999999884 34444 6789999
Q ss_pred EEcccc--ee--eeeEec-cCCCceeeeeecCCCccEEEecCCCCeeEEEEecCCeeeEEeecccccccEEEEcc-CCcE
Q 018248 119 YNFTDL--KL--VDQIET-VVNPTGLCDVSQNAGPMVMACPGLLKGQVRVEDYGTKKSKYITAHASRIASIAMTL-DGRF 192 (359)
Q Consensus 119 ~d~~~~--~~--~~~~~~-~~~~~~~~~~~~~~~~~~l~~~g~~d~~v~~~~~~~~~~~~~~~~~~~i~~~~~s~-~~~~ 192 (359)
||+.++ .+ -..+.. .......++|- .+..++.+ |.....+.+.+.+........-.+..+..+.+.| .+.+
T Consensus 134 wdi~s~ltvPke~~~fs~~~l~gqns~cwl--rd~klvla-Gm~sr~~~ifdlRqs~~~~~svnTk~vqG~tVdp~~~nY 210 (783)
T KOG1008|consen 134 WDINSLLTVPKESPLFSSSTLDGQNSVCWL--RDTKLVLA-GMTSRSVHIFDLRQSLDSVSSVNTKYVQGITVDPFSPNY 210 (783)
T ss_pred eecccccCCCccccccccccccCccccccc--cCcchhhc-ccccchhhhhhhhhhhhhhhhhhhhhcccceecCCCCCc
Confidence 999765 11 112222 22223445554 33333444 7777788886666544443333455677788888 7778
Q ss_pred EEEEeCCCCeEEEEEc-CCCc-EEEEeecCC--CCcceEEEEecCCCC-EEEEEc-CCCcEEEEEccCCC
Q 018248 193 VATASSKGTLIRVFNT-MDGS-LLQEMRRGA--ERAEIYSLAFSSNAQ-WLAASS-DKGTVHVFGLKVDS 256 (359)
Q Consensus 193 l~~~~~dg~~i~iwd~-~~~~-~~~~~~~~~--~~~~i~~~~~s~~~~-~l~~~~-~dg~i~iw~~~~~~ 256 (359)
+++-. ||. |.+||. ++-+ ++..+.... ....+..++|.|... .+++.. ..++|+.+++....
T Consensus 211 ~cs~~-dg~-iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~v~ 278 (783)
T KOG1008|consen 211 FCSNS-DGD-IAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICVVG 278 (783)
T ss_pred eeccc-cCc-eeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEecccccC
Confidence 76655 888 999993 3322 222222110 112488999999543 444444 45789999987543
No 355
>PRK13616 lipoprotein LpqB; Provisional
Probab=97.85 E-value=0.0034 Score=56.96 Aligned_cols=134 Identities=13% Similarity=0.084 Sum_probs=72.3
Q ss_pred ecCeEEEEEcccceeeeeEeccCCCceeeeeecCCCccEEEec---CCCCe--eEEEEecCCeeeEEeecccccccEEEE
Q 018248 112 LNQKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAGPMVMACP---GLLKG--QVRVEDYGTKKSKYITAHASRIASIAM 186 (359)
Q Consensus 112 ~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~---g~~d~--~v~~~~~~~~~~~~~~~~~~~i~~~~~ 186 (359)
.+|.+.-.+-..-..+.-..+....+...+++|+++....+.. ...|. .+.+....+.. +.+..- .......|
T Consensus 327 ~~G~l~~~~~~~~~pv~g~~g~~~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~-~~lt~g-~~~t~PsW 404 (591)
T PRK13616 327 VDGSLVSVDGQGVTPVPGAFGQMGNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVA-VQVLEG-HSLTRPSW 404 (591)
T ss_pred ECCeEEEecCCCeeeCCCccccccCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcc-eeeecC-CCCCCceE
Confidence 6666655442221222212122234567889999987443331 01133 44443443333 333222 24888999
Q ss_pred ccCCcEEEEEeCCCCeEEEE-----------EcCCCcEEEEeecCCCCcceEEEEecCCCCEEEEEcCCCcEEEEEcc
Q 018248 187 TLDGRFVATASSKGTLIRVF-----------NTMDGSLLQEMRRGAERAEIYSLAFSSNAQWLAASSDKGTVHVFGLK 253 (359)
Q Consensus 187 s~~~~~l~~~~~dg~~i~iw-----------d~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~ 253 (359)
+|||+.|++.......+++. ++..++... ...+.|..+.|||||..|+... +|.|++=-+.
T Consensus 405 spDG~~lw~v~dg~~~~~v~~~~~~gql~~~~vd~ge~~~-----~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vv 476 (591)
T PRK13616 405 SLDADAVWVVVDGNTVVRVIRDPATGQLARTPVDASAVAS-----RVPGPISELQLSRDGVRAAMII-GGKVYLAVVE 476 (591)
T ss_pred CCCCCceEEEecCcceEEEeccCCCceEEEEeccCchhhh-----ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEE
Confidence 99999888775432213333 332222211 1235799999999999888765 4777774443
No 356
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.84 E-value=0.016 Score=50.05 Aligned_cols=236 Identities=17% Similarity=0.133 Sum_probs=152.5
Q ss_pred eEEEEEccCCCEEEEec--CCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEECCCc
Q 018248 9 IHHLALNQDHGCFATGT--ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDDHEN 86 (359)
Q Consensus 9 v~~~~~s~~g~~l~~~~--d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~ 86 (359)
...+.+.+++..+.... ...+...+.. ......... .-......+.+.+.++.+..... .++.|.+.|..+.
T Consensus 33 ~~~v~~~~~g~~~~v~~~~~~~~~~~~~~--~n~~~~~~~-~g~~~p~~i~v~~~~~~vyv~~~---~~~~v~vid~~~~ 106 (381)
T COG3391 33 PGGVAVNPDGTQVYVANSGSNDVSVIDAT--SNTVTQSLS-VGGVYPAGVAVNPAGNKVYVTTG---DSNTVSVIDTATN 106 (381)
T ss_pred CceeEEcCccCEEEEEeecCceeeecccc--cceeeeecc-CCCccccceeeCCCCCeEEEecC---CCCeEEEEcCccc
Confidence 34567788886665544 2333333333 111111111 00012234455555554444432 3589999998888
Q ss_pred cEEeeeccCcceeEEEEecceeEEE---e---cCeEEEEEcccceeeeeEeccCCCceeeeeecCCCccEEEecCCCCee
Q 018248 87 RYLGELSFRSEVKNVRLRRDRIVVV---L---NQKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAGPMVMACPGLLKGQ 160 (359)
Q Consensus 87 ~~~~~~~~~~~v~~~~~~~~~~~~~---~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~ 160 (359)
+.............+++++++..+. . ++.+.+.|..+.+.+........+ ..+++.|++...+++. ..++.
T Consensus 107 ~~~~~~~vG~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P-~~~a~~p~g~~vyv~~--~~~~~ 183 (381)
T COG3391 107 TVLGSIPVGLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTP-TGVAVDPDGNKVYVTN--SDDNT 183 (381)
T ss_pred ceeeEeeeccCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCc-ceEEECCCCCeEEEEe--cCCCe
Confidence 8888877555788999999986555 2 588999998888888886554444 6789999998766654 35778
Q ss_pred EEEEecCCeeeEE-----eecccccccEEEEccCCcEEEEEeCC---CCeEEEEEcCCCcEEEE-eecCCCCcceEEEEe
Q 018248 161 VRVEDYGTKKSKY-----ITAHASRIASIAMTLDGRFVATASSK---GTLIRVFNTMDGSLLQE-MRRGAERAEIYSLAF 231 (359)
Q Consensus 161 v~~~~~~~~~~~~-----~~~~~~~i~~~~~s~~~~~l~~~~~d---g~~i~iwd~~~~~~~~~-~~~~~~~~~i~~~~~ 231 (359)
+.+.+.+...+.. ...-......+.++|+|.++...... +. +...|..++..... .... .. ....+..
T Consensus 184 v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~-v~~id~~~~~v~~~~~~~~-~~-~~~~v~~ 260 (381)
T COG3391 184 VSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNN-VLKIDTATGNVTATDLPVG-SG-APRGVAV 260 (381)
T ss_pred EEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCce-EEEEeCCCceEEEeccccc-cC-CCCceeE
Confidence 8886666554443 11122345788999999977665544 47 99999888877665 2221 22 4567899
Q ss_pred cCCCCEEEEEcC-CCcEEEEEccCCC
Q 018248 232 SSNAQWLAASSD-KGTVHVFGLKVDS 256 (359)
Q Consensus 232 s~~~~~l~~~~~-dg~i~iw~~~~~~ 256 (359)
+|+|+.+.+... .+.+.+-|..+..
T Consensus 261 ~p~g~~~yv~~~~~~~V~vid~~~~~ 286 (381)
T COG3391 261 DPAGKAAYVANSQGGTVSVIDGATDR 286 (381)
T ss_pred CCCCCEEEEEecCCCeEEEEeCCCCc
Confidence 999998887744 4778888887755
No 357
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.83 E-value=9e-05 Score=65.16 Aligned_cols=115 Identities=17% Similarity=0.175 Sum_probs=86.3
Q ss_pred CceeeeeecCCCccEEEecCCCCeeEEEEecCCeeeEEeec--ccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcE
Q 018248 136 PTGLCDVSQNAGPMVMACPGLLKGQVRVEDYGTKKSKYITA--HASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSL 213 (359)
Q Consensus 136 ~~~~~~~~~~~~~~~l~~~g~~d~~v~~~~~~~~~~~~~~~--~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~ 213 (359)
.+...++....+. ++. |+..|.++++...+...+.++. ..+.+..+.++++..++|.|+..|. |.++-+....+
T Consensus 35 ~v~lTc~dst~~~--l~~-GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~-V~v~ql~~~~p 110 (726)
T KOG3621|consen 35 RVKLTCVDATEEY--LAM-GSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGR-VSVFQLNKELP 110 (726)
T ss_pred eEEEEEeecCCce--EEE-ecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCce-EEeehhhccCC
Confidence 3455566666655 555 6678999999888876666554 5566777888999999999999998 99998765432
Q ss_pred EE--Eee--cCCCCcceEEEEecCCCCEEEEEcCCCcEEEEEccC
Q 018248 214 LQ--EMR--RGAERAEIYSLAFSSNAQWLAASSDKGTVHVFGLKV 254 (359)
Q Consensus 214 ~~--~~~--~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~ 254 (359)
.. .+. ...|...|++++|++|+..+.+|...|.|..-.+++
T Consensus 111 ~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 111 RDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred CcceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence 11 111 122567999999999999999999999999988887
No 358
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.80 E-value=0.00014 Score=63.15 Aligned_cols=93 Identities=16% Similarity=0.197 Sum_probs=73.7
Q ss_pred CceeeeeecCCCccEEEecCCCCeeEEEEecCCeeeEEeeccccccc-EEEEccCCcEEEEEeCCCCeEEEEEcCCCcEE
Q 018248 136 PTGLCDVSQNAGPMVMACPGLLKGQVRVEDYGTKKSKYITAHASRIA-SIAMTLDGRFVATASSKGTLIRVFNTMDGSLL 214 (359)
Q Consensus 136 ~~~~~~~~~~~~~~~l~~~g~~d~~v~~~~~~~~~~~~~~~~~~~i~-~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~~ 214 (359)
.+..+.|+|.-+- +|. +..+|.+.+...+.+.+-++..|...++ +++|.|||++||.|-.||+ |++.|..++..+
T Consensus 22 ~i~~~ewnP~~dL--iA~-~t~~gelli~R~n~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~-I~L~Dve~~~~l 97 (665)
T KOG4640|consen 22 NIKRIEWNPKMDL--IAT-RTEKGELLIHRLNWQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGT-IRLHDVEKGGRL 97 (665)
T ss_pred ceEEEEEcCccch--hhe-eccCCcEEEEEeccceeEeccCCCCccceeeeecCCCCEEEEEecCCe-EEEEEccCCCce
Confidence 3556778887665 554 5578999987777788888887777777 9999999999999999999 999999999888
Q ss_pred EEeecCCCCcceEEEEecC
Q 018248 215 QEMRRGAERAEIYSLAFSS 233 (359)
Q Consensus 215 ~~~~~~~~~~~i~~~~~s~ 233 (359)
..+... ....|.++-|++
T Consensus 98 ~~~~~s-~e~~is~~~w~~ 115 (665)
T KOG4640|consen 98 VSFLFS-VETDISKGIWDR 115 (665)
T ss_pred eccccc-cccchheeeccc
Confidence 774321 345788888863
No 359
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.79 E-value=0.00011 Score=39.33 Aligned_cols=38 Identities=32% Similarity=0.650 Sum_probs=31.9
Q ss_pred cEEEEeecCCCCcceEEEEecCCCCEEEEEcCCCcEEEEE
Q 018248 212 SLLQEMRRGAERAEIYSLAFSSNAQWLAASSDKGTVHVFG 251 (359)
Q Consensus 212 ~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~ 251 (359)
+.+..+.. |...|.++.|+++++++++++.|+.+++|+
T Consensus 3 ~~~~~~~~--~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTLKG--HTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEEe--cCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 44555554 667899999999999999999999999996
No 360
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.78 E-value=0.0048 Score=57.12 Aligned_cols=129 Identities=19% Similarity=0.258 Sum_probs=84.0
Q ss_pred CCCeEEEEECCCccEEeeeccCc--ceeEEEEe-------cceeEEE-ecCeEEEEEcccc--eeeee-Eec--cCCCce
Q 018248 74 QSNKVMIWDDHENRYLGELSFRS--EVKNVRLR-------RDRIVVV-LNQKVYVYNFTDL--KLVDQ-IET--VVNPTG 138 (359)
Q Consensus 74 ~d~~i~iwd~~~~~~~~~~~~~~--~v~~~~~~-------~~~~~~~-~d~~i~i~d~~~~--~~~~~-~~~--~~~~~~ 138 (359)
....|+-.|++.|+.+.+.+... +|..++-. +...++. .++.+..||.+-. +++.. ... ......
T Consensus 502 ~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~Fs 581 (794)
T PF08553_consen 502 NPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNFS 581 (794)
T ss_pred CCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccccccccCCCce
Confidence 35889999999999999998333 34544322 3334555 8999999998643 22211 111 222334
Q ss_pred eeeeecCCCccEEEecCCCCeeEEEEecCCeeeE-EeecccccccEEEEccCCcEEEEEeCCCCeEEEEEc
Q 018248 139 LCDVSQNAGPMVMACPGLLKGQVRVEDYGTKKSK-YITAHASRIASIAMTLDGRFVATASSKGTLIRVFNT 208 (359)
Q Consensus 139 ~~~~~~~~~~~~l~~~g~~d~~v~~~~~~~~~~~-~~~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~ 208 (359)
+++-+.+|. +|. |+.+|.||+++..+..-+ .+.+-..+|..|..+.||++|++.+.. . +.+++.
T Consensus 582 ~~aTt~~G~---iav-gs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc~t-y-LlLi~t 646 (794)
T PF08553_consen 582 CFATTEDGY---IAV-GSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATCKT-Y-LLLIDT 646 (794)
T ss_pred EEEecCCce---EEE-EeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEeecc-e-EEEEEE
Confidence 444443332 555 778999999876654333 356678899999999999988766544 4 777775
No 361
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=97.78 E-value=0.027 Score=50.81 Aligned_cols=188 Identities=15% Similarity=0.123 Sum_probs=104.8
Q ss_pred CEEEEec-CCceEEEEcCCCcceeeeecccCCCCceeE---E-----EEeccCCEEEEEecCCCCCCeEEEEECCCccEE
Q 018248 19 GCFATGT-ETGFRVYLSDPYKPIMRRDFDRNPRGGTQL---V-----SMLFRSNIICLVNSGPHQSNKVMIWDDHENRYL 89 (359)
Q Consensus 19 ~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~---~-----~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~ 89 (359)
..+.+++ ++.|.-+|..+++.+...... .. ..+.. . .....+..+++.+ .|+.+.-.|.++|+.+
T Consensus 70 g~vyv~s~~g~v~AlDa~TGk~lW~~~~~-~~-~~~~~~~~~~~~~rg~av~~~~v~v~t----~dg~l~ALDa~TGk~~ 143 (527)
T TIGR03075 70 GVMYVTTSYSRVYALDAKTGKELWKYDPK-LP-DDVIPVMCCDVVNRGVALYDGKVFFGT----LDARLVALDAKTGKVV 143 (527)
T ss_pred CEEEEECCCCcEEEEECCCCceeeEecCC-CC-cccccccccccccccceEECCEEEEEc----CCCEEEEEECCCCCEE
Confidence 3455555 888999999998888766542 11 11110 0 0112234455544 5799999999999998
Q ss_pred eeeccCc-----ceeEEEEecceeEEE-e-------cCeEEEEEcccceeeeeEeccCCC--------------------
Q 018248 90 GELSFRS-----EVKNVRLRRDRIVVV-L-------NQKVYVYNFTDLKLVDQIETVVNP-------------------- 136 (359)
Q Consensus 90 ~~~~~~~-----~v~~~~~~~~~~~~~-~-------d~~i~i~d~~~~~~~~~~~~~~~~-------------------- 136 (359)
....... .+.+.-.--++.+++ . +|.|..+|.++|+.+..+..-...
T Consensus 144 W~~~~~~~~~~~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~~~tw 223 (527)
T TIGR03075 144 WSKKNGDYKAGYTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPGAKTW 223 (527)
T ss_pred eecccccccccccccCCcEEECCEEEEeecccccCCCcEEEEEECCCCceeEeccCcCCCcccccccccccccccccCCC
Confidence 8765211 121111111445554 1 589999999999988776432111
Q ss_pred -----------ce-eeeeecCCCccEEEecCC---------------CCeeEEEEecCCeeeEEeeccccc---------
Q 018248 137 -----------TG-LCDVSQNAGPMVMACPGL---------------LKGQVRVEDYGTKKSKYITAHASR--------- 180 (359)
Q Consensus 137 -----------~~-~~~~~~~~~~~~l~~~g~---------------~d~~v~~~~~~~~~~~~~~~~~~~--------- 180 (359)
+. ..++.+..+.+++.+ |. .+..|.++..+++..-.++.....
T Consensus 224 ~~~~~~~gg~~~W~~~s~D~~~~lvy~~t-Gnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~ 302 (527)
T TIGR03075 224 PGDAWKTGGGATWGTGSYDPETNLIYFGT-GNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEWDYDGVNE 302 (527)
T ss_pred CCCccccCCCCccCceeEcCCCCeEEEeC-CCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeCCCCCCccccCCCC
Confidence 00 113333333333333 22 123344455555554444332111
Q ss_pred ccEEEEccCCc---EEEEEeCCCCeEEEEEcCCCcEE
Q 018248 181 IASIAMTLDGR---FVATASSKGTLIRVFNTMDGSLL 214 (359)
Q Consensus 181 i~~~~~s~~~~---~l~~~~~dg~~i~iwd~~~~~~~ 214 (359)
..-+.+..+|+ .++.+..+|. +.+.|..+|+.+
T Consensus 303 p~l~d~~~~G~~~~~v~~~~K~G~-~~vlDr~tG~~i 338 (527)
T TIGR03075 303 MILFDLKKDGKPRKLLAHADRNGF-FYVLDRTNGKLL 338 (527)
T ss_pred cEEEEeccCCcEEEEEEEeCCCce-EEEEECCCCcee
Confidence 11222334666 7889999999 999999999886
No 362
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=97.76 E-value=0.024 Score=49.79 Aligned_cols=195 Identities=12% Similarity=0.135 Sum_probs=104.4
Q ss_pred EEEEeccCCEEEEEe--cCCCCCCeEEEEECCCccEEeeeccCcceeEEEEecceeEEE--------e------cCeEEE
Q 018248 55 LVSMLFRSNIICLVN--SGPHQSNKVMIWDDHENRYLGELSFRSEVKNVRLRRDRIVVV--------L------NQKVYV 118 (359)
Q Consensus 55 ~~~~~~~~~~~~~~~--~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~--------~------d~~i~i 118 (359)
...++|+++.+++.- +|. ....+++.|+.+|+.+...-.......+.|.+++..++ . ...|+.
T Consensus 128 ~~~~Spdg~~la~~~s~~G~-e~~~l~v~Dl~tg~~l~d~i~~~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~ 206 (414)
T PF02897_consen 128 GFSVSPDGKRLAYSLSDGGS-EWYTLRVFDLETGKFLPDGIENPKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYR 206 (414)
T ss_dssp EEEETTTSSEEEEEEEETTS-SEEEEEEEETTTTEEEEEEEEEEESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEEEE
T ss_pred eeeECCCCCEEEEEecCCCC-ceEEEEEEECCCCcCcCCcccccccceEEEeCCCCEEEEEEeCcccccccCCCCcEEEE
Confidence 467788899887653 232 44679999999997765432222223499999976655 1 345888
Q ss_pred EEccccee--eeeEeccCCCc--eeeeeecCCCccEEEecCCCC-eeEEEEecCC-----eeeEEeecccccccEEEEcc
Q 018248 119 YNFTDLKL--VDQIETVVNPT--GLCDVSQNAGPMVMACPGLLK-GQVRVEDYGT-----KKSKYITAHASRIASIAMTL 188 (359)
Q Consensus 119 ~d~~~~~~--~~~~~~~~~~~--~~~~~~~~~~~~~l~~~g~~d-~~v~~~~~~~-----~~~~~~~~~~~~i~~~~~s~ 188 (359)
|.+.+... ...++...... ..+..+.+++.+++.+....+ ..+++-+... ...+.+......+....-+.
T Consensus 207 ~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v~~~ 286 (414)
T PF02897_consen 207 HKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYYVDHH 286 (414)
T ss_dssp EETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEEEEEE
T ss_pred EECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEEEEcc
Confidence 88865532 23444444333 346678888776665544445 5677644433 24444444444444433333
Q ss_pred CCcEEEEEeC---CCCeEEEEEcCCCcE---EEEeecCCCCcceEEEEecCCCCEEE-EEcCCC--cEEEEEcc
Q 018248 189 DGRFVATASS---KGTLIRVFNTMDGSL---LQEMRRGAERAEIYSLAFSSNAQWLA-ASSDKG--TVHVFGLK 253 (359)
Q Consensus 189 ~~~~l~~~~~---dg~~i~iwd~~~~~~---~~~~~~~~~~~~i~~~~~s~~~~~l~-~~~~dg--~i~iw~~~ 253 (359)
.+.+++.... .+. |.-.++.+... ...+..+.....+..+.. .+.+|+ .-..++ .|+++++.
T Consensus 287 ~~~~yi~Tn~~a~~~~-l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~--~~~~Lvl~~~~~~~~~l~v~~~~ 357 (414)
T PF02897_consen 287 GDRLYILTNDDAPNGR-LVAVDLADPSPAEWWTVLIPEDEDVSLEDVSL--FKDYLVLSYRENGSSRLRVYDLD 357 (414)
T ss_dssp TTEEEEEE-TT-TT-E-EEEEETTSTSGGGEEEEEE--SSSEEEEEEEE--ETTEEEEEEEETTEEEEEEEETT
T ss_pred CCEEEEeeCCCCCCcE-EEEecccccccccceeEEcCCCCceeEEEEEE--ECCEEEEEEEECCccEEEEEECC
Confidence 4544444432 344 66667766542 223333212224555554 344444 444444 47788887
No 363
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=97.76 E-value=0.022 Score=49.11 Aligned_cols=235 Identities=14% Similarity=0.104 Sum_probs=111.7
Q ss_pred ceEEEEEccCCCEEEEec-CCceEEEEcCCCcceeeeecccCCCCceeE--EEEeccCCEEEEEecCCCCCCeEEEEECC
Q 018248 8 TIHHLALNQDHGCFATGT-ETGFRVYLSDPYKPIMRRDFDRNPRGGTQL--VSMLFRSNIICLVNSGPHQSNKVMIWDDH 84 (359)
Q Consensus 8 ~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~--~~~~~~~~~~~~~~~~~~~d~~i~iwd~~ 84 (359)
.|.++.|.++..-|++|. .|.|.||.....+..-..... . ...... +.....+..+.-++.- .+.. ++
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~-~-~~~~~~~~~~~~~~~~~l~di~~r--~~~~-----~~ 73 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQP-P-DLDYNFRRFSLNNSPGKLTDISDR--APPS-----LK 73 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE--------------------S--GGGSS-SEEE-GGG----TT------S
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCC-c-ccCcccccccccCCCcceEEehhh--CCcc-----cc
Confidence 589999999988999988 999999987643221100100 0 000000 0000011111111100 0000 01
Q ss_pred Cc-cEEeeec-cCcceeEEEEecceeEEE--ecCeEEEEEcccceeeeeEeccC--------CCceeeeee---cCCCc-
Q 018248 85 EN-RYLGELS-FRSEVKNVRLRRDRIVVV--LNQKVYVYNFTDLKLVDQIETVV--------NPTGLCDVS---QNAGP- 148 (359)
Q Consensus 85 ~~-~~~~~~~-~~~~v~~~~~~~~~~~~~--~d~~i~i~d~~~~~~~~~~~~~~--------~~~~~~~~~---~~~~~- 148 (359)
.| .+...+. ..++|++++.+.-|-..+ .+|.+.|.|++....+..-.... ..+..+.|+ ..++.
T Consensus 74 ~gf~P~~l~~~~~g~vtal~~S~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~y 153 (395)
T PF08596_consen 74 EGFLPLTLLDAKQGPVTALKNSDIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGY 153 (395)
T ss_dssp EEEEEEEEE---S-SEEEEEE-BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSS
T ss_pred cccCchhheeccCCcEeEEecCCCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcc
Confidence 11 2233333 468999999987776666 78999999998887776633222 123344443 23332
Q ss_pred --cEEEecCCCCeeEEEEecC----Ce----eeEEeecccccccEEE-EccC---------------------CcEEEEE
Q 018248 149 --MVMACPGLLKGQVRVEDYG----TK----KSKYITAHASRIASIA-MTLD---------------------GRFVATA 196 (359)
Q Consensus 149 --~~l~~~g~~d~~v~~~~~~----~~----~~~~~~~~~~~i~~~~-~s~~---------------------~~~l~~~ 196 (359)
..+.+ |...|.+.++... +. .......+.++|..+. ++.+ ..+++++
T Consensus 154 SSi~L~v-GTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvv 232 (395)
T PF08596_consen 154 SSICLLV-GTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVV 232 (395)
T ss_dssp EEEEEEE-EETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE
T ss_pred cceEEEE-EeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEE
Confidence 34444 6677888885432 11 1111124455555554 3211 1144444
Q ss_pred eCCCCeEEEEEcCCCcEEEEeecCCCCcceEEEEe-----cCCCCEEEEEcCCCcEEEEEccCCC
Q 018248 197 SSKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAF-----SSNAQWLAASSDKGTVHVFGLKVDS 256 (359)
Q Consensus 197 ~~dg~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~-----s~~~~~l~~~~~dg~i~iw~~~~~~ 256 (359)
+.. . ++++...+.+....... ..-....+.+ ...+..|++-..+|.|+++.+..-+
T Consensus 233 Se~-~-irv~~~~~~k~~~K~~~--~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lk 293 (395)
T PF08596_consen 233 SES-D-IRVFKPPKSKGAHKSFD--DPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLK 293 (395)
T ss_dssp -SS-E-EEEE-TT---EEEEE-S--S-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--
T ss_pred ccc-c-eEEEeCCCCcccceeec--cccccceEEEEeecccCCceEEEEEECCCcEEEEECCCch
Confidence 443 4 99999888776655542 2223334444 2356678888999999999998755
No 364
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.75 E-value=0.014 Score=46.61 Aligned_cols=193 Identities=8% Similarity=0.077 Sum_probs=107.8
Q ss_pred CCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEECCCccEEeeec--cCcceeEEEEecceeEEE---ecCeEEEEEcc
Q 018248 48 NPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDDHENRYLGELS--FRSEVKNVRLRRDRIVVV---LNQKVYVYNFT 122 (359)
Q Consensus 48 ~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~---~d~~i~i~d~~ 122 (359)
+-...++.+.+.++.+.++.+.. ..+.|..++. +|+.++.+. ..+....+++..++.+++ .++.+.++++.
T Consensus 19 g~~~e~SGLTy~pd~~tLfaV~d---~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~ 94 (248)
T PF06977_consen 19 GILDELSGLTYNPDTGTLFAVQD---EPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTID 94 (248)
T ss_dssp T--S-EEEEEEETTTTEEEEEET---TTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE-
T ss_pred CccCCccccEEcCCCCeEEEEEC---CCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEe
Confidence 34566899999998888888876 4688988885 688888887 336788999998888887 47899999883
Q ss_pred cc------eeeeeEe-----ccCCCceeeeeecCCCccEEEecCCCCeeEEEEecCC----eeeEEe--------ecccc
Q 018248 123 DL------KLVDQIE-----TVVNPTGLCDVSQNAGPMVMACPGLLKGQVRVEDYGT----KKSKYI--------TAHAS 179 (359)
Q Consensus 123 ~~------~~~~~~~-----~~~~~~~~~~~~~~~~~~~l~~~g~~d~~v~~~~~~~----~~~~~~--------~~~~~ 179 (359)
.. .....+. .......-+++.+..+.++++- +..-..++..+. ..+... .....
T Consensus 95 ~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~k---E~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (248)
T PF06977_consen 95 DDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAK---ERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVR 171 (248)
T ss_dssp ---TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEE---ESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS
T ss_pred ccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEe---CCCChhhEEEccccCccceeeccccccccccceec
Confidence 21 1112222 1223466789999888766654 333333422221 111111 11234
Q ss_pred cccEEEEccCCc-EEEEEeCCCCeEEEEEcCCCcEEEEeecCC--C-----CcceEEEEecCCCCEEEEEcCCCcEEEE
Q 018248 180 RIASIAMTLDGR-FVATASSKGTLIRVFNTMDGSLLQEMRRGA--E-----RAEIYSLAFSSNAQWLAASSDKGTVHVF 250 (359)
Q Consensus 180 ~i~~~~~s~~~~-~l~~~~~dg~~i~iwd~~~~~~~~~~~~~~--~-----~~~i~~~~~s~~~~~l~~~~~dg~i~iw 250 (359)
.+.+++++|... +++.+..... |..+| .+|+.+..+.... | -...-.|+|.++|++.++ ++-+..++|
T Consensus 172 d~S~l~~~p~t~~lliLS~es~~-l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIv-sEpNlfy~f 247 (248)
T PF06977_consen 172 DLSGLSYDPRTGHLLILSDESRL-LLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIV-SEPNLFYRF 247 (248)
T ss_dssp ---EEEEETTTTEEEEEETTTTE-EEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEE-ETTTEEEEE
T ss_pred cccceEEcCCCCeEEEEECCCCe-EEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEE-cCCceEEEe
Confidence 578899998654 5555555665 88999 6788766554321 1 125788999999976665 455544444
No 365
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=97.74 E-value=0.022 Score=48.56 Aligned_cols=235 Identities=14% Similarity=0.140 Sum_probs=100.7
Q ss_pred CceEEEEEc-----------cCCCEEEEec--CCceEEEEcCC--Ccceeeeeccc--CCC----CceeEEEEeccCCEE
Q 018248 7 ITIHHLALN-----------QDHGCFATGT--ETGFRVYLSDP--YKPIMRRDFDR--NPR----GGTQLVSMLFRSNII 65 (359)
Q Consensus 7 ~~v~~~~~s-----------~~g~~l~~~~--d~~i~iw~~~~--~~~~~~~~~~~--~h~----~~v~~~~~~~~~~~~ 65 (359)
++....-|+ .+.++|+..+ ++.|.|+|+.+ .+..+.+.++. -+. .....+...++++.+
T Consensus 65 DElHH~GWNaCSsc~~~~~~~~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~im 144 (461)
T PF05694_consen 65 DELHHSGWNACSSCHYGDPSKERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIM 144 (461)
T ss_dssp --B---EES--GGSTT--TT--S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EE
T ss_pred CccccccCcccccccCCCCcccCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEE
Confidence 456666666 3567887777 78899999873 23333333320 000 011112223445444
Q ss_pred EEEecCCC--CCCeEEEEECCCccEEeeeccC----cceeEEEEecceeEEE-----------------------ecCeE
Q 018248 66 CLVNSGPH--QSNKVMIWDDHENRYLGELSFR----SEVKNVRLRRDRIVVV-----------------------LNQKV 116 (359)
Q Consensus 66 ~~~~~~~~--~d~~i~iwd~~~~~~~~~~~~~----~~v~~~~~~~~~~~~~-----------------------~d~~i 116 (359)
+.+-+... ..|.+.+.|-++.+........ .--.++-+.|..+.++ ...++
T Consensus 145 IS~lGd~~G~g~Ggf~llD~~tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l 224 (461)
T PF05694_consen 145 ISALGDADGNGPGGFVLLDGETFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSL 224 (461)
T ss_dssp EEEEEETTS-S--EEEEE-TTT--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EE
T ss_pred EEeccCCCCCCCCcEEEEcCccccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeE
Confidence 43322211 3467888887777777666521 2234566677655554 14689
Q ss_pred EEEEcccceeeeeEeccCCCc--eeeeeecCCCccEEEecCCCCeeEEEEec-C-C----eeeEEeecc-----------
Q 018248 117 YVYNFTDLKLVDQIETVVNPT--GLCDVSQNAGPMVMACPGLLKGQVRVEDY-G-T----KKSKYITAH----------- 177 (359)
Q Consensus 117 ~i~d~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~g~~d~~v~~~~~-~-~----~~~~~~~~~----------- 177 (359)
.+||+.+.+.++++....... --+.|..+++...-.+++.-...|..|-. + + +.+..+...
T Consensus 225 ~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml 304 (461)
T PF05694_consen 225 HVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEML 304 (461)
T ss_dssp EEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGG
T ss_pred EEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccc
Confidence 999999999999997654322 23455555443222221113445555332 2 2 222222211
Q ss_pred ------cccccEEEEccCCcEEEEEe-CCCCeEEEEEcCCCc---EEEEeecCC--------------CCcceEEEEecC
Q 018248 178 ------ASRIASIAMTLDGRFVATAS-SKGTLIRVFNTMDGS---LLQEMRRGA--------------ERAEIYSLAFSS 233 (359)
Q Consensus 178 ------~~~i~~~~~s~~~~~l~~~~-~dg~~i~iwd~~~~~---~~~~~~~~~--------------~~~~i~~~~~s~ 233 (359)
..-|+.|.+|.|.++|..++ .+|. |+.||+.+.. +..++..+. -.+...-+..|.
T Consensus 305 ~~~~~~P~LitDI~iSlDDrfLYvs~W~~Gd-vrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~ 383 (461)
T PF05694_consen 305 KPFGAVPPLITDILISLDDRFLYVSNWLHGD-VRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSL 383 (461)
T ss_dssp GGG-EE------EEE-TTS-EEEEEETTTTE-EEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-T
T ss_pred cccccCCCceEeEEEccCCCEEEEEcccCCc-EEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEcc
Confidence 24578999999999998777 5777 9999997643 333322110 112335677788
Q ss_pred CCCEEEEEc
Q 018248 234 NAQWLAASS 242 (359)
Q Consensus 234 ~~~~l~~~~ 242 (359)
||+.|...+
T Consensus 384 DGkRlYvTn 392 (461)
T PF05694_consen 384 DGKRLYVTN 392 (461)
T ss_dssp TSSEEEEE-
T ss_pred CCeEEEEEe
Confidence 888776543
No 366
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.72 E-value=0.00011 Score=39.28 Aligned_cols=38 Identities=32% Similarity=0.648 Sum_probs=33.2
Q ss_pred eeeEEeecccccccEEEEccCCcEEEEEeCCCCeEEEEE
Q 018248 169 KKSKYITAHASRIASIAMTLDGRFVATASSKGTLIRVFN 207 (359)
Q Consensus 169 ~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd 207 (359)
.....+..|...|.++.|++++.++++++.|+. +++|+
T Consensus 3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~-~~~~~ 40 (40)
T smart00320 3 ELLKTLKGHTGPVTSVAFSPDGKYLASASDDGT-IKLWD 40 (40)
T ss_pred EEEEEEEecCCceeEEEECCCCCEEEEecCCCe-EEEcC
Confidence 345666788899999999999999999999999 99996
No 367
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.65 E-value=0.006 Score=41.27 Aligned_cols=84 Identities=14% Similarity=0.161 Sum_probs=60.0
Q ss_pred CCCeEEEEECCCccEEeeeccCcceeEEEEecceeEEE--ecCeEEEEEcccceeeeeEeccCCCceeeeeecCCCccE-
Q 018248 74 QSNKVMIWDDHENRYLGELSFRSEVKNVRLRRDRIVVV--LNQKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAGPMV- 150 (359)
Q Consensus 74 ~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~--~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 150 (359)
.|..|++|+ ..+.+.++...+.|.++.-...+++.. .+|+|-+|+- .+.+..++....++....+..++++..
T Consensus 23 ~D~~IRvf~--~~e~~~Ei~e~~~v~~L~~~~~~~F~Y~l~NGTVGvY~~--~~RlWRiKSK~~~~~~~~~D~~gdG~~e 98 (111)
T PF14783_consen 23 DDFEIRVFK--GDEIVAEITETDKVTSLCSLGGGRFAYALANGTVGVYDR--SQRLWRIKSKNQVTSMAFYDINGDGVPE 98 (111)
T ss_pred CCcEEEEEe--CCcEEEEEecccceEEEEEcCCCEEEEEecCCEEEEEeC--cceeeeeccCCCeEEEEEEcCCCCCceE
Confidence 789999997 558888888888899999888877766 9999999984 566667766555555555555554322
Q ss_pred EEecCCCCeeEE
Q 018248 151 MACPGLLKGQVR 162 (359)
Q Consensus 151 l~~~g~~d~~v~ 162 (359)
|++ |-.+|.|-
T Consensus 99 LI~-GwsnGkve 109 (111)
T PF14783_consen 99 LIV-GWSNGKVE 109 (111)
T ss_pred EEE-EecCCeEE
Confidence 333 55566654
No 368
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.57 E-value=0.00041 Score=60.49 Aligned_cols=78 Identities=17% Similarity=0.203 Sum_probs=66.6
Q ss_pred ccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcEEEEeecCCCCcceE-EEEecCCCCEEEEEcCCCcEEEEEccCCCC
Q 018248 179 SRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRRGAERAEIY-SLAFSSNAQWLAASSDKGTVHVFGLKVDSG 257 (359)
Q Consensus 179 ~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~i~-~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~ 257 (359)
..+.-+.|+|.-.++|++..+|. |-+..+. .+.+.++.. +...++ +++|.|||+.||.|-.||+|++-|+.++..
T Consensus 21 ~~i~~~ewnP~~dLiA~~t~~ge-lli~R~n-~qRlwtip~--p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~ 96 (665)
T KOG4640|consen 21 INIKRIEWNPKMDLIATRTEKGE-LLIHRLN-WQRLWTIPI--PGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGR 96 (665)
T ss_pred cceEEEEEcCccchhheeccCCc-EEEEEec-cceeEeccC--CCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCc
Confidence 45678899999999999999999 9999876 778888874 334555 999999999999999999999999999886
Q ss_pred CCC
Q 018248 258 SPG 260 (359)
Q Consensus 258 ~~~ 260 (359)
...
T Consensus 97 l~~ 99 (665)
T KOG4640|consen 97 LVS 99 (665)
T ss_pred eec
Confidence 544
No 369
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=97.53 E-value=0.064 Score=48.48 Aligned_cols=233 Identities=10% Similarity=0.090 Sum_probs=126.7
Q ss_pred CEEEEec-CCceEEEEcCCCcceeeeecccCCCC--ceeEEEEeccCCEEEEEecCCC--CCCeEEEEECCCccEEeeec
Q 018248 19 GCFATGT-ETGFRVYLSDPYKPIMRRDFDRNPRG--GTQLVSMLFRSNIICLVNSGPH--QSNKVMIWDDHENRYLGELS 93 (359)
Q Consensus 19 ~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~h~~--~v~~~~~~~~~~~~~~~~~~~~--~d~~i~iwd~~~~~~~~~~~ 93 (359)
..+++++ ++.+.-.|.++++........ .+.. .+...-.. .++.+++...+.. .++.|.-+|.++|+.+-.+.
T Consensus 121 ~~v~v~t~dg~l~ALDa~TGk~~W~~~~~-~~~~~~~~tssP~v-~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~ 198 (527)
T TIGR03075 121 GKVFFGTLDARLVALDAKTGKVVWSKKNG-DYKAGYTITAAPLV-VKGKVITGISGGEFGVRGYVTAYDAKTGKLVWRRY 198 (527)
T ss_pred CEEEEEcCCCEEEEEECCCCCEEeecccc-cccccccccCCcEE-ECCEEEEeecccccCCCcEEEEEECCCCceeEecc
Confidence 3555666 999999999999888766542 1111 11111111 1234443332110 26899999999998887764
Q ss_pred -cC-c------------------------------cee-EEEEecceeEEE--e-------------c----CeEEEEEc
Q 018248 94 -FR-S------------------------------EVK-NVRLRRDRIVVV--L-------------N----QKVYVYNF 121 (359)
Q Consensus 94 -~~-~------------------------------~v~-~~~~~~~~~~~~--~-------------d----~~i~i~d~ 121 (359)
.. . .+. .+++.|...++. . | ..|.-.|+
T Consensus 199 ~~p~~~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~ 278 (527)
T TIGR03075 199 TVPGDMGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDP 278 (527)
T ss_pred CcCCCcccccccccccccccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEcc
Confidence 11 1 111 224444433333 1 1 26788889
Q ss_pred ccceeeeeEeccCCCce---------eeeeecCCCccEEEecCCCCeeEEE-EecCCeeeEE--------ee---c-cc-
Q 018248 122 TDLKLVDQIETVVNPTG---------LCDVSQNAGPMVMACPGLLKGQVRV-EDYGTKKSKY--------IT---A-HA- 178 (359)
Q Consensus 122 ~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~l~~~g~~d~~v~~-~~~~~~~~~~--------~~---~-~~- 178 (359)
++|+....++...+... .+.+..+++..-++..+..+|.+++ +..+++.+.. .. . ..
T Consensus 279 ~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i~~~~~~~~~~w~~~~~~~~g 358 (527)
T TIGR03075 279 DTGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLLSAEPFVDTVNWATGVDLKTG 358 (527)
T ss_pred ccCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCceeccccccCCcccccccCCCCC
Confidence 99999888876433322 2233234442223323668999998 4445555311 10 0 00
Q ss_pred cc----------------------------ccEEEEccCCcEEEEEeCC-------------------------------
Q 018248 179 SR----------------------------IASIAMTLDGRFVATASSK------------------------------- 199 (359)
Q Consensus 179 ~~----------------------------i~~~~~s~~~~~l~~~~~d------------------------------- 199 (359)
.+ -..++++|+..+++....+
T Consensus 359 ~p~~~~~~~~~~~~~~~~~~~~Pg~~Gg~~W~~~A~Dp~~g~~yvp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~p~~~~ 438 (527)
T TIGR03075 359 RPIEVPEARSADGKKGKPVGVCPGFLGGKNWQPMAYSPKTGLFYVPANEVCMDYEPEKVSYKKGAAYLGAGLTIKPPPDD 438 (527)
T ss_pred CCccChhhCcCCCCCCCeeEECCCCcCCCCCCCceECCCCCEEEEecccccccccccccccCCCCceeccccccCCCCCC
Confidence 00 0125666665554433222
Q ss_pred --CCeEEEEEcCCCcEEEEeecCCCCcceEEEEecCCCCEEEEEcCCCcEEEEEccCCCC
Q 018248 200 --GTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSNAQWLAASSDKGTVHVFGLKVDSG 257 (359)
Q Consensus 200 --g~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~ 257 (359)
|. |.-+|+.+++.+-+.+.... ...+. ..-.+.+++.++.+|.++.+|.++++.
T Consensus 439 ~~g~-l~AiD~~tGk~~W~~~~~~p--~~~~~-l~t~g~lvf~g~~~G~l~a~D~~TGe~ 494 (527)
T TIGR03075 439 HMGS-LIAWDPITGKIVWEHKEDFP--LWGGV-LATAGDLVFYGTLEGYFKAFDAKTGEE 494 (527)
T ss_pred Ccee-EEEEeCCCCceeeEecCCCC--CCCcc-eEECCcEEEEECCCCeEEEEECCCCCE
Confidence 44 77788888887766653211 11111 112455777788899999999999983
No 370
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=97.48 E-value=0.039 Score=44.66 Aligned_cols=118 Identities=19% Similarity=0.183 Sum_probs=72.0
Q ss_pred CceeeeeecCCCccEEEecCCCCeeEEEEecCCeeeEEeecccccccEEEEccCCcEEEEEeCCCCeEEEEE-cCCCcEE
Q 018248 136 PTGLCDVSQNAGPMVMACPGLLKGQVRVEDYGTKKSKYITAHASRIASIAMTLDGRFVATASSKGTLIRVFN-TMDGSLL 214 (359)
Q Consensus 136 ~~~~~~~~~~~~~~~l~~~g~~d~~v~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd-~~~~~~~ 214 (359)
.+...+++++++....+..+.....+++....+....... ...+....|++++...+....+.. .+++. ..+++..
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~~--g~~l~~PS~d~~g~~W~v~~~~~~-~~~~~~~~~g~~~ 101 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVLT--GGSLTRPSWDPDGWVWTVDDGSGG-VRVVRDSASGTGE 101 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceeecc--CCccccccccCCCCEEEEEcCCCc-eEEEEecCCCcce
Confidence 4667899999886444431223345555544443333333 237888899999887777666666 66663 3333322
Q ss_pred -EEeecCCCCcceEEEEecCCCCEEEEEc---CCCcEEEEEccCCC
Q 018248 215 -QEMRRGAERAEIYSLAFSSNAQWLAASS---DKGTVHVFGLKVDS 256 (359)
Q Consensus 215 -~~~~~~~~~~~i~~~~~s~~~~~l~~~~---~dg~i~iw~~~~~~ 256 (359)
..+......+.|..+.+||||..++... .++.|.|=-+....
T Consensus 102 ~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~ 147 (253)
T PF10647_consen 102 PVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDG 147 (253)
T ss_pred eEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCC
Confidence 2222211112899999999999877665 35778887776544
No 371
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.41 E-value=0.00081 Score=62.40 Aligned_cols=100 Identities=16% Similarity=0.256 Sum_probs=68.7
Q ss_pred EEecCCCCeeEEEEecCCe--eeEEeecccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcEEEEeecCCCC-cceE
Q 018248 151 MACPGLLKGQVRVEDYGTK--KSKYITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRRGAER-AEIY 227 (359)
Q Consensus 151 l~~~g~~d~~v~~~~~~~~--~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~~~~~~~~~~~-~~i~ 227 (359)
++. |+..|.+-..+.++. +...-..-.++|++++|+.+|+.++.|-.+|. |.+||+..++.++.+..+.++ ..+.
T Consensus 102 ivi-~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~-V~v~D~~~~k~l~~i~e~~ap~t~vi 179 (1206)
T KOG2079|consen 102 IVI-GTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGH-VTVWDMHRAKILKVITEHGAPVTGVI 179 (1206)
T ss_pred EEE-EcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCc-EEEEEccCCcceeeeeecCCccceEE
Confidence 444 556777777555443 22222334679999999999999999999999 999999999988887653221 2333
Q ss_pred EEEecCCCCEEEEEcCCCcEEEEEccC
Q 018248 228 SLAFSSNAQWLAASSDKGTVHVFGLKV 254 (359)
Q Consensus 228 ~~~~s~~~~~l~~~~~dg~i~iw~~~~ 254 (359)
.+.+..++..+.++...|. +|.+.-
T Consensus 180 ~v~~t~~nS~llt~D~~Gs--f~~lv~ 204 (1206)
T KOG2079|consen 180 FVGRTSQNSKLLTSDTGGS--FWKLVF 204 (1206)
T ss_pred EEEEeCCCcEEEEccCCCc--eEEEEe
Confidence 4445556667788777774 676643
No 372
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.38 E-value=0.0043 Score=53.37 Aligned_cols=137 Identities=18% Similarity=0.282 Sum_probs=90.0
Q ss_pred ecCeEEEEEcccceeeeeEeccCCCceeeeeecCCCccEEEe----cCCCCeeEEEEecCCe---eeEEeecc----ccc
Q 018248 112 LNQKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAGPMVMAC----PGLLKGQVRVEDYGTK---KSKYITAH----ASR 180 (359)
Q Consensus 112 ~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~----~g~~d~~v~~~~~~~~---~~~~~~~~----~~~ 180 (359)
....++-.|++.|+.+...+.+.. +..+.+.|+.+..-+.. .|-.+..|.-|+.+-+ .+...+.| ...
T Consensus 354 ~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kqy~~k~n 432 (644)
T KOG2395|consen 354 EQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQYSTKNN 432 (644)
T ss_pred CcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeeccccccccc
Confidence 345788889999999999887665 77788888765432221 1334555555655432 22222333 234
Q ss_pred ccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcEEEEeecCCCCcceEEEEecCCCCEEEEEcCCCcEEEEEccC
Q 018248 181 IASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSNAQWLAASSDKGTVHVFGLKV 254 (359)
Q Consensus 181 i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~ 254 (359)
..|.+-..+| ++++||.+|. |++||- .+..-++.-.+ -..+|..+..+.||++|++.+ +..+.+-++.-
T Consensus 433 Fsc~aTT~sG-~IvvgS~~Gd-IRLYdr-i~~~AKTAlPg-LG~~I~hVdvtadGKwil~Tc-~tyLlLi~t~~ 501 (644)
T KOG2395|consen 433 FSCFATTESG-YIVVGSLKGD-IRLYDR-IGRRAKTALPG-LGDAIKHVDVTADGKWILATC-KTYLLLIDTLI 501 (644)
T ss_pred cceeeecCCc-eEEEeecCCc-EEeehh-hhhhhhhcccc-cCCceeeEEeeccCcEEEEec-ccEEEEEEEec
Confidence 5566655555 7899999999 999996 55444333322 456999999999999987655 55677777654
No 373
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.38 E-value=0.0094 Score=51.39 Aligned_cols=138 Identities=16% Similarity=0.292 Sum_probs=89.3
Q ss_pred EEEEecCCCCCCeEEEEECCCccEEeeeccCcceeEEEEeccee---------EEE-ecCeEEEEEcccc-e-eeeeEec
Q 018248 65 ICLVNSGPHQSNKVMIWDDHENRYLGELSFRSEVKNVRLRRDRI---------VVV-LNQKVYVYNFTDL-K-LVDQIET 132 (359)
Q Consensus 65 ~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~---------~~~-~d~~i~i~d~~~~-~-~~~~~~~ 132 (359)
+++.+++ ....++-.|++.|+.+.+.+....|.-+.+.|+.. ++. .++.|.-||.+-. + .+...+.
T Consensus 347 lil~~~~--~~~~l~klDIE~GKIVeEWk~~~di~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~ 424 (644)
T KOG2395|consen 347 LILMDGG--EQDKLYKLDIERGKIVEEWKFEDDINMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQS 424 (644)
T ss_pred eEeeCCC--CcCcceeeecccceeeeEeeccCCcceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeec
Confidence 3344444 34788899999999999999666688788877642 233 8899999998532 2 2222222
Q ss_pred cC--CCceeeeeecCCCccEEEecCCCCeeEEEEecCCeee-EEeecccccccEEEEccCCcEEEEEeCCCCeEEEEEc
Q 018248 133 VV--NPTGLCDVSQNAGPMVMACPGLLKGQVRVEDYGTKKS-KYITAHASRIASIAMTLDGRFVATASSKGTLIRVFNT 208 (359)
Q Consensus 133 ~~--~~~~~~~~~~~~~~~~l~~~g~~d~~v~~~~~~~~~~-~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~ 208 (359)
+. .....-++...+++ ++++ |+.+|.|++++..+... ..+++-..+|..+..+.+|++|+..+. .. +.+-++
T Consensus 425 kqy~~k~nFsc~aTT~sG-~Ivv-gS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc~-ty-LlLi~t 499 (644)
T KOG2395|consen 425 KQYSTKNNFSCFATTESG-YIVV-GSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWILATCK-TY-LLLIDT 499 (644)
T ss_pred cccccccccceeeecCCc-eEEE-eecCCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEEEecc-cE-EEEEEE
Confidence 21 11122233333333 2444 77899999988765443 346778889999999999998865544 34 666664
No 374
>PRK13616 lipoprotein LpqB; Provisional
Probab=97.33 E-value=0.053 Score=49.50 Aligned_cols=185 Identities=11% Similarity=0.114 Sum_probs=96.8
Q ss_pred CceEEEEEccCCCEEEEec-------CCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCC------
Q 018248 7 ITIHHLALNQDHGCFATGT-------ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPH------ 73 (359)
Q Consensus 7 ~~v~~~~~s~~g~~l~~~~-------d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~------ 73 (359)
..+.+.++||||+.+|... |..-.||-...+.... .... ......-.|++++..+.++..+..
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~~-~lt~---g~~~t~PsWspDG~~lw~v~dg~~~~~v~~ 425 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVAV-QVLE---GHSLTRPSWSLDADAVWVVVDGNTVVRVIR 425 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcce-eeec---CCCCCCceECCCCCceEEEecCcceEEEec
Confidence 3578899999999886653 3333444433222221 1121 223566678888777766653210
Q ss_pred --CCCeEEEEECCCccEEeeeccCcceeEEEEecceeEEE--ecCeEEE---EEccccee-e---eeEec-cCCCceeee
Q 018248 74 --QSNKVMIWDDHENRYLGELSFRSEVKNVRLRRDRIVVV--LNQKVYV---YNFTDLKL-V---DQIET-VVNPTGLCD 141 (359)
Q Consensus 74 --~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~--~d~~i~i---~d~~~~~~-~---~~~~~-~~~~~~~~~ 141 (359)
..+.+.+.++..++... .....|..+.|+|||..++ .+++|++ -....|.. + ..+.. ....+..+.
T Consensus 426 ~~~~gql~~~~vd~ge~~~--~~~g~Issl~wSpDG~RiA~i~~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l~ 503 (591)
T PRK13616 426 DPATGQLARTPVDASAVAS--RVPGPISELQLSRDGVRAAMIIGGKVYLAVVEQTEDGQYALTNPREVGPGLGDTAVSLD 503 (591)
T ss_pred cCCCceEEEEeccCchhhh--ccCCCcCeEEECCCCCEEEEEECCEEEEEEEEeCCCCceeecccEEeecccCCccccce
Confidence 12445555555544433 4456799999999999888 7788887 33334431 1 11221 122235567
Q ss_pred eecCCCccEEEecCCCCeeEEEEecCCeeeEEeec--ccccccEEEEccCCcEEEEEeCCCC
Q 018248 142 VSQNAGPMVMACPGLLKGQVRVEDYGTKKSKYITA--HASRIASIAMTLDGRFVATASSKGT 201 (359)
Q Consensus 142 ~~~~~~~~~l~~~g~~d~~v~~~~~~~~~~~~~~~--~~~~i~~~~~s~~~~~l~~~~~dg~ 201 (359)
|..++. ++++. ...+..+..-..++.....+.. ...++..++=+++ -++....++.
T Consensus 504 W~~~~~-L~V~~-~~~~~~v~~v~vDG~~~~~~~~~n~~~~v~~vaa~~~--~iyv~~~~g~ 561 (591)
T PRK13616 504 WRTGDS-LVVGR-SDPEHPVWYVNLDGSNSDALPSRNLSAPVVAVAASPS--TVYVTDARAV 561 (591)
T ss_pred EecCCE-EEEEe-cCCCCceEEEecCCccccccCCCCccCceEEEecCCc--eEEEEcCCce
Confidence 776665 33333 2223334333444433332222 2445666665553 3444444543
No 375
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=97.27 E-value=0.078 Score=43.62 Aligned_cols=214 Identities=19% Similarity=0.278 Sum_probs=117.1
Q ss_pred cCCCEEEEecCCceEEEEcC-CCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEECCCccEEe----
Q 018248 16 QDHGCFATGTETGFRVYLSD-PYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDDHENRYLG---- 90 (359)
Q Consensus 16 ~~g~~l~~~~d~~i~iw~~~-~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~---- 90 (359)
..++.|+.|++..+.+++.. ..+.. ... +...|..+...+.-+.+++.+ |+.+.++++..-....
T Consensus 5 ~~~~~L~vGt~~Gl~~~~~~~~~~~~--~i~---~~~~I~ql~vl~~~~~llvLs-----d~~l~~~~L~~l~~~~~~~~ 74 (275)
T PF00780_consen 5 SWGDRLLVGTEDGLYVYDLSDPSKPT--RIL---KLSSITQLSVLPELNLLLVLS-----DGQLYVYDLDSLEPVSTSAP 74 (275)
T ss_pred cCCCEEEEEECCCEEEEEecCCccce--eEe---ecceEEEEEEecccCEEEEEc-----CCccEEEEchhhcccccccc
Confidence 46788999995559999993 32222 222 134488888888778877776 5899999976543333
Q ss_pred -----------eeccCcceeEEE---EecceeEEE--ecCeEEEEEcccc-----eeeeeEeccCCCceeeeeecCCCcc
Q 018248 91 -----------ELSFRSEVKNVR---LRRDRIVVV--LNQKVYVYNFTDL-----KLVDQIETVVNPTGLCDVSQNAGPM 149 (359)
Q Consensus 91 -----------~~~~~~~v~~~~---~~~~~~~~~--~d~~i~i~d~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (359)
.+.....+...+ -......++ ...+|.+|..... +..+.+... ..+..++|. ++.
T Consensus 75 ~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~lp-~~~~~i~~~--~~~- 150 (275)
T PF00780_consen 75 LAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISLP-DPPSSIAFL--GNK- 150 (275)
T ss_pred ccccccccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEEcC-CCcEEEEEe--CCE-
Confidence 122223344444 112233343 7779999887542 455566554 444556665 444
Q ss_pred EEEecCCCCeeEEEEecCCeeeEEeecc------------cccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcEEE--
Q 018248 150 VMACPGLLKGQVRVEDYGTKKSKYITAH------------ASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQ-- 215 (359)
Q Consensus 150 ~l~~~g~~d~~v~~~~~~~~~~~~~~~~------------~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~~~-- 215 (359)
++. |..++...++..++.....+... ..++..+.. +++.+|++- +. +-+|=-..|+..+
T Consensus 151 -i~v-~~~~~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~Ll~~--~~--~g~fv~~~G~~~r~~ 223 (275)
T PF00780_consen 151 -ICV-GTSKGFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQL-SDNEFLLCY--DN--IGVFVNKNGEPSRKS 223 (275)
T ss_pred -EEE-EeCCceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEe-CCceEEEEe--cc--eEEEEcCCCCcCccc
Confidence 333 33454444444433332222111 122333333 345666543 22 3333224554443
Q ss_pred EeecCCCCcceEEEEecCCCCEEEEEcCCCcEEEEEccCCC
Q 018248 216 EMRRGAERAEIYSLAFSSNAQWLAASSDKGTVHVFGLKVDS 256 (359)
Q Consensus 216 ~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~ 256 (359)
.+.- ...+.++++. ..+|+..+.++ |.||++.+++
T Consensus 224 ~i~W---~~~p~~~~~~--~pyli~~~~~~-iEV~~~~~~~ 258 (275)
T PF00780_consen 224 TIQW---SSAPQSVAYS--SPYLIAFSSNS-IEVRSLETGE 258 (275)
T ss_pred EEEc---CCchhEEEEE--CCEEEEECCCE-EEEEECcCCc
Confidence 3332 2356677773 45888776654 9999999987
No 376
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=97.18 E-value=0.0018 Score=36.49 Aligned_cols=31 Identities=19% Similarity=0.224 Sum_probs=28.3
Q ss_pred CCCceEEEEEccCCCEEEEec-CCceEEEEcC
Q 018248 5 DPITIHHLALNQDHGCFATGT-ETGFRVYLSD 35 (359)
Q Consensus 5 h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~ 35 (359)
-...|.+++|+|...+||.|+ +|.|.+|.++
T Consensus 10 l~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~ 41 (47)
T PF12894_consen 10 LPSRVSCMSWCPTMDLIALGTEDGEVLVYRLN 41 (47)
T ss_pred CCCcEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence 456899999999999999999 9999999984
No 377
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.13 E-value=0.094 Score=41.97 Aligned_cols=189 Identities=13% Similarity=0.082 Sum_probs=95.5
Q ss_pred CceEEEEEccCCCEEEEe-c-CCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEECC
Q 018248 7 ITIHHLALNQDHGCFATG-T-ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDDH 84 (359)
Q Consensus 7 ~~v~~~~~s~~g~~l~~~-~-d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~~ 84 (359)
..++.++|+|+...|++. . .+.|..++.+ ++.+....+. + .+....+++.- ++.++++.. .++.+.++++.
T Consensus 22 ~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~vlr~i~l~-g-~~D~EgI~y~g-~~~~vl~~E---r~~~L~~~~~~ 94 (248)
T PF06977_consen 22 DELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKVLRRIPLD-G-FGDYEGITYLG-NGRYVLSEE---RDQRLYIFTID 94 (248)
T ss_dssp S-EEEEEEETTTTEEEEEETTTTEEEEEETT---EEEEEE-S-S--SSEEEEEE-S-TTEEEEEET---TTTEEEEEEE-
T ss_pred CCccccEEcCCCCeEEEEECCCCEEEEEcCC-CCEEEEEeCC-C-CCCceeEEEEC-CCEEEEEEc---CCCcEEEEEEe
Confidence 459999999987666544 4 5666666654 4555444553 2 34455566543 334444442 46899988873
Q ss_pred Cc------cEEeeec------cCcceeEEEEecce-eEEE--ecCeEEEEEccc---ceeeeeE--------eccCCCce
Q 018248 85 EN------RYLGELS------FRSEVKNVRLRRDR-IVVV--LNQKVYVYNFTD---LKLVDQI--------ETVVNPTG 138 (359)
Q Consensus 85 ~~------~~~~~~~------~~~~v~~~~~~~~~-~~~~--~d~~i~i~d~~~---~~~~~~~--------~~~~~~~~ 138 (359)
.. .....+. .+..+..++|+|.+ .+++ ...-..+|.+.. ...+... ........
T Consensus 95 ~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S 174 (248)
T PF06977_consen 95 DDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLS 174 (248)
T ss_dssp ---TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---
T ss_pred ccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceecccc
Confidence 32 1122222 33458899999964 3333 554455555532 1111111 01223456
Q ss_pred eeeeecCCCccEEEecCCCCeeEEEEecCCeeeEEeeccc---------ccccEEEEccCCcEEEEEeCCCCeEEEE
Q 018248 139 LCDVSQNAGPMVMACPGLLKGQVRVEDYGTKKSKYITAHA---------SRIASIAMTLDGRFVATASSKGTLIRVF 206 (359)
Q Consensus 139 ~~~~~~~~~~~~l~~~g~~d~~v~~~~~~~~~~~~~~~~~---------~~i~~~~~s~~~~~l~~~~~dg~~i~iw 206 (359)
.+++.|....+++.+ ..+..+...+.+++.+..+.-.. .+...|+|.++|++.+ .++-+. .++|
T Consensus 175 ~l~~~p~t~~lliLS--~es~~l~~~d~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYI-vsEpNl-fy~f 247 (248)
T PF06977_consen 175 GLSYDPRTGHLLILS--DESRLLLELDRQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYI-VSEPNL-FYRF 247 (248)
T ss_dssp EEEEETTTTEEEEEE--TTTTEEEEE-TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEE-EETTTE-EEEE
T ss_pred ceEEcCCCCeEEEEE--CCCCeEEEECCCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEE-EcCCce-EEEe
Confidence 778888877776665 25666666778887766553222 3577899999997554 445444 4444
No 378
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.10 E-value=0.1 Score=41.75 Aligned_cols=157 Identities=11% Similarity=0.103 Sum_probs=98.4
Q ss_pred CCccEEeeeccCcceeEEEEecceeEEE-----ecCeEEEEEcccceeeeeEeccCC--CceeeeeecCCCccEEEecCC
Q 018248 84 HENRYLGELSFRSEVKNVRLRRDRIVVV-----LNQKVYVYNFTDLKLVDQIETVVN--PTGLCDVSQNAGPMVMACPGL 156 (359)
Q Consensus 84 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~-----~d~~i~i~d~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~g~ 156 (359)
+.|+++.....+..-..+.++|.....+ -.....++|..+.+....+...++ -..--.|++++..+| ++-+.
T Consensus 56 eaGk~v~~~~lpaR~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LY-ATEnd 134 (366)
T COG3490 56 EAGKIVFATALPARGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLY-ATEND 134 (366)
T ss_pred cCCceeeeeecccccCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEE-eecCC
Confidence 5677777777777778889988654332 344677899888777666644332 223347889887533 33222
Q ss_pred ---CCeeEEEEecCC--eeeEEeecccccccEEEEccCCcEEEEEeCC------------------CCeEEEEEcCCCcE
Q 018248 157 ---LKGQVRVEDYGT--KKSKYITAHASRIASIAMTLDGRFVATASSK------------------GTLIRVFNTMDGSL 213 (359)
Q Consensus 157 ---~d~~v~~~~~~~--~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d------------------g~~i~iwd~~~~~~ 213 (359)
..|.|-||+.+. +.+-.+..|.-....+.+.+||+.|+.+... -+ +.+.|..+|+.
T Consensus 135 fd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePS-lvlld~atG~l 213 (366)
T COG3490 135 FDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPS-LVLLDAATGNL 213 (366)
T ss_pred CCCCCceEEEEecccccceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCcc-EEEEeccccch
Confidence 236777877664 3455677788788899999999998876431 12 33444455554
Q ss_pred EEEeecC--CCCcceEEEEecCCCCEEEEEc
Q 018248 214 LQEMRRG--AERAEIYSLAFSSNAQWLAASS 242 (359)
Q Consensus 214 ~~~~~~~--~~~~~i~~~~~s~~~~~l~~~~ 242 (359)
+.+.... .+.-.|..++..+||+.++.+-
T Consensus 214 iekh~Lp~~l~~lSiRHld~g~dgtvwfgcQ 244 (366)
T COG3490 214 IEKHTLPASLRQLSIRHLDIGRDGTVWFGCQ 244 (366)
T ss_pred hhhccCchhhhhcceeeeeeCCCCcEEEEEE
Confidence 4332221 2345677788888877666543
No 379
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=97.08 E-value=0.0026 Score=35.83 Aligned_cols=31 Identities=16% Similarity=0.424 Sum_probs=28.7
Q ss_pred CcceEEEEecCCCCEEEEEcCCCcEEEEEcc
Q 018248 223 RAEIYSLAFSSNAQWLAASSDKGTVHVFGLK 253 (359)
Q Consensus 223 ~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~ 253 (359)
...|..++|+|...+||.++.+|.|.+++++
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~ 41 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRLN 41 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence 4579999999999999999999999999994
No 380
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=96.91 E-value=0.24 Score=42.91 Aligned_cols=77 Identities=16% Similarity=0.272 Sum_probs=51.6
Q ss_pred cccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcEEEEeecCCCCcceEEEEecCC-----------------CC-EEE
Q 018248 178 ASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSN-----------------AQ-WLA 239 (359)
Q Consensus 178 ~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~-----------------~~-~l~ 239 (359)
...+.+++.+|++++.|+...-|. |.++|+.++..++.+++-.+ ..+.-+..... .. +++
T Consensus 307 ~R~~~~i~~sP~~~laA~tDslGR-V~LiD~~~~~vvrmWKGYRd-Aqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvI 384 (415)
T PF14655_consen 307 KREGESICLSPSGRLAAVTDSLGR-VLLIDVARGIVVRMWKGYRD-AQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVI 384 (415)
T ss_pred CceEEEEEECCCCCEEEEEcCCCc-EEEEECCCChhhhhhccCcc-ceEEEEEeecccccccccccccCCCCcceEEEEE
Confidence 445788999999999988878888 99999999888777765211 11111111100 11 234
Q ss_pred EEcCCCcEEEEEccCCC
Q 018248 240 ASSDKGTVHVFGLKVDS 256 (359)
Q Consensus 240 ~~~~dg~i~iw~~~~~~ 256 (359)
-+-..|.|.||.++.+.
T Consensus 385 yaprRg~lEvW~~~~g~ 401 (415)
T PF14655_consen 385 YAPRRGILEVWSMRQGP 401 (415)
T ss_pred EeccCCeEEEEecCCCC
Confidence 45677888999988876
No 381
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=96.90 E-value=0.00024 Score=62.02 Aligned_cols=159 Identities=13% Similarity=0.083 Sum_probs=92.9
Q ss_pred CCCCceEEEEEcc-CCCEEEEec-----CCceEEEEcCCC--cceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCC
Q 018248 4 PDPITIHHLALNQ-DHGCFATGT-----ETGFRVYLSDPY--KPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQS 75 (359)
Q Consensus 4 ~h~~~v~~~~~s~-~g~~l~~~~-----d~~i~iw~~~~~--~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d 75 (359)
++-...++++|++ |...||+|- |..+.|||+.+. .......|..+-......++|.-+ ..+++++. ..
T Consensus 100 ~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd-~klvlaGm---~s 175 (783)
T KOG1008|consen 100 GYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRD-TKLVLAGM---TS 175 (783)
T ss_pred cccccccccccccccHHHHHhhhhhhcccCCccceecccccCCCccccccccccccCccccccccC-cchhhccc---cc
Confidence 3456788999998 567788875 355999999865 222222222112334456666633 33333333 34
Q ss_pred CeEEEEECCCccEEeeeccCcceeEEEEec-ceeEEE--ecCeEEEEEc-cc-ceeeeeEeccC----CCceeeeeecCC
Q 018248 76 NKVMIWDDHENRYLGELSFRSEVKNVRLRR-DRIVVV--LNQKVYVYNF-TD-LKLVDQIETVV----NPTGLCDVSQNA 146 (359)
Q Consensus 76 ~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~--~d~~i~i~d~-~~-~~~~~~~~~~~----~~~~~~~~~~~~ 146 (359)
..+.++|++........-....+..+...| ...+++ .|+.|.+||. .. .+++..+.... .....++|+|..
T Consensus 176 r~~~ifdlRqs~~~~~svnTk~vqG~tVdp~~~nY~cs~~dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtr 255 (783)
T KOG1008|consen 176 RSVHIFDLRQSLDSVSSVNTKYVQGITVDPFSPNYFCSNSDGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTR 255 (783)
T ss_pred chhhhhhhhhhhhhhhhhhhhhcccceecCCCCCceeccccCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCC
Confidence 789999976432211111334567788888 677777 8999999993 22 22222222222 236678889987
Q ss_pred CccEEEecCCCCeeEEEEecC
Q 018248 147 GPMVMACPGLLKGQVRVEDYG 167 (359)
Q Consensus 147 ~~~~l~~~g~~d~~v~~~~~~ 167 (359)
.+.+... ....++|++++..
T Consensus 256 tglla~l-~RdS~tIrlydi~ 275 (783)
T KOG1008|consen 256 TGLLAVL-SRDSITIRLYDIC 275 (783)
T ss_pred cchhhhh-ccCcceEEEeccc
Confidence 6654444 4456777776554
No 382
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=96.85 E-value=0.033 Score=48.02 Aligned_cols=82 Identities=16% Similarity=0.235 Sum_probs=56.8
Q ss_pred eeEEeecccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcEEEEeecC------CCCcceEEEEecC-----CC---
Q 018248 170 KSKYITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRRG------AERAEIYSLAFSS-----NA--- 235 (359)
Q Consensus 170 ~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~~~~~~~~------~~~~~i~~~~~s~-----~~--- 235 (359)
+...+....++|++++.|. =-++|.|..+|. +.|.|++....+..-... .....++++.|+. |+
T Consensus 78 P~~l~~~~~g~vtal~~S~-iGFvaigy~~G~-l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySS 155 (395)
T PF08596_consen 78 PLTLLDAKQGPVTALKNSD-IGFVAIGYESGS-LVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSS 155 (395)
T ss_dssp EEEEE---S-SEEEEEE-B-TSEEEEEETTSE-EEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEE
T ss_pred chhheeccCCcEeEEecCC-CcEEEEEecCCc-EEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccc
Confidence 3444556689999999974 449999999999 999999988877663221 1334688888872 33
Q ss_pred CEEEEEcCCCcEEEEEcc
Q 018248 236 QWLAASSDKGTVHVFGLK 253 (359)
Q Consensus 236 ~~l~~~~~dg~i~iw~~~ 253 (359)
-.|++|++.|.+.+|.+.
T Consensus 156 i~L~vGTn~G~v~~fkIl 173 (395)
T PF08596_consen 156 ICLLVGTNSGNVLTFKIL 173 (395)
T ss_dssp EEEEEEETTSEEEEEEEE
T ss_pred eEEEEEeCCCCEEEEEEe
Confidence 378889999999999986
No 383
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=96.77 E-value=0.5 Score=44.58 Aligned_cols=228 Identities=13% Similarity=0.194 Sum_probs=134.1
Q ss_pred CEEEEecCCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCC-----------CCCeEEEEECCCcc
Q 018248 19 GCFATGTETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPH-----------QSNKVMIWDDHENR 87 (359)
Q Consensus 19 ~~l~~~~d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~-----------~d~~i~iwd~~~~~ 87 (359)
..|+.+..+.+++..++.-++...+++. -......++..+. ...+.+.+.+. .-..++++|-++-+
T Consensus 685 d~l~~~~~~~l~i~tid~iqkl~irtvp--l~~~prrI~~q~~-sl~~~v~s~r~e~~~~~~~ee~~~s~l~vlD~nTf~ 761 (1096)
T KOG1897|consen 685 DSLASANGGALTIGTIDEIQKLHIRTVP--LGESPRRICYQES-SLTFGVLSNRIESSAEYYGEEYEVSFLRVLDQNTFE 761 (1096)
T ss_pred ceEEEecCCceEEEEecchhhcceeeec--CCCChhheEeccc-ceEEEEEecccccchhhcCCcceEEEEEEecCCcee
Confidence 4567777788888888766555555543 1222333333331 22222221111 12346788877777
Q ss_pred EEeeeccC-----cceeEEEEecc-eeEEE-------------ecCeEEEEEcccceeeeeEeccCCCceeeeeecCCCc
Q 018248 88 YLGELSFR-----SEVKNVRLRRD-RIVVV-------------LNQKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAGP 148 (359)
Q Consensus 88 ~~~~~~~~-----~~v~~~~~~~~-~~~~~-------------~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (359)
.+...+.. ..+.+..|..| +.+++ ..|.|.++....++.++.+..+.-.-...++..-+.
T Consensus 762 vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~Gav~aL~~fng- 840 (1096)
T KOG1897|consen 762 VLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKGAVYALVEFNG- 840 (1096)
T ss_pred EEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeeccceeehhhhCC-
Confidence 66665522 23445557766 44433 358899998866444444432222222333333222
Q ss_pred cEEEecCCCCeeEEEEecCCe-eeEEeecccccccEEEEccCCcEEEEEeCCCCeEEEEEcCC--CcEEEEeecCCCCcc
Q 018248 149 MVMACPGLLKGQVRVEDYGTK-KSKYITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMD--GSLLQEMRRGAERAE 225 (359)
Q Consensus 149 ~~l~~~g~~d~~v~~~~~~~~-~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~--~~~~~~~~~~~~~~~ 225 (359)
.++|.- ...|+++..+.+ .++.-..+..++..+.+.-.|..+++|..-++ +.+...+. |... ++...-++.+
T Consensus 841 kllA~I---n~~vrLye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~S-itll~y~~~eg~f~-evArD~~p~W 915 (1096)
T KOG1897|consen 841 KLLAGI---NQSVRLYEWTTERELRIECNISNPIIALDLQVKGDEIAVGDLMRS-ITLLQYKGDEGNFE-EVARDYNPNW 915 (1096)
T ss_pred eEEEec---CcEEEEEEccccceehhhhcccCCeEEEEEEecCcEEEEeeccce-EEEEEEeccCCceE-EeehhhCccc
Confidence 345543 558999776655 55555677888999999999999999998887 77655443 3333 3433446678
Q ss_pred eEEEEecCCCCEEEEEcCCCcEEEEEccCCC
Q 018248 226 IYSLAFSSNAQWLAASSDKGTVHVFGLKVDS 256 (359)
Q Consensus 226 i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~ 256 (359)
.+++.+-.+. .++.+..+|.+.+-..++..
T Consensus 916 mtaveil~~d-~ylgae~~gNlf~v~~d~~~ 945 (1096)
T KOG1897|consen 916 MTAVEILDDD-TYLGAENSGNLFTVRKDSDA 945 (1096)
T ss_pred eeeEEEecCc-eEEeecccccEEEEEecCCC
Confidence 8888886544 44556778888888777543
No 384
>PRK10115 protease 2; Provisional
Probab=96.76 E-value=0.5 Score=44.41 Aligned_cols=238 Identities=8% Similarity=-0.003 Sum_probs=120.9
Q ss_pred ceEEEEEccCCCEEEEec--CCc----eEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCC--CCCeEE
Q 018248 8 TIHHLALNQDHGCFATGT--ETG----FRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPH--QSNKVM 79 (359)
Q Consensus 8 ~v~~~~~s~~g~~l~~~~--d~~----i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~--~d~~i~ 79 (359)
.+..+.+||||++|+.+. +|. |++.|+.++.... ..+ ...-..++|.++++.+++...... ....|+
T Consensus 128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~-~~i----~~~~~~~~w~~D~~~~~y~~~~~~~~~~~~v~ 202 (686)
T PRK10115 128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYP-ELL----DNVEPSFVWANDSWTFYYVRKHPVTLLPYQVW 202 (686)
T ss_pred EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCC-ccc----cCcceEEEEeeCCCEEEEEEecCCCCCCCEEE
Confidence 477789999999998876 232 7888888764321 222 122245888888888877764210 236788
Q ss_pred EEECCCc--cEEeeec-cCccee-EEEEecceeEEE------ecCeEEEEEc--ccceeeeeEeccCCCceeeeeecCCC
Q 018248 80 IWDDHEN--RYLGELS-FRSEVK-NVRLRRDRIVVV------LNQKVYVYNF--TDLKLVDQIETVVNPTGLCDVSQNAG 147 (359)
Q Consensus 80 iwd~~~~--~~~~~~~-~~~~v~-~~~~~~~~~~~~------~d~~i~i~d~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (359)
.+++.++ +....+. ...... ....+.++.+++ .++.+.+++. .+++....+. ....... .+...++
T Consensus 203 ~h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~ 280 (686)
T PRK10115 203 RHTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLP-RRKDHEY-SLDHYQH 280 (686)
T ss_pred EEECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEE-CCCCCEE-EEEeCCC
Confidence 8998887 3333343 222222 333344666554 5678888885 2333222222 2222222 2222334
Q ss_pred ccEEEecC-CCCeeEEEEecC-CeeeEEeecc-c-ccccEEEEccCCcEEEEEeCCCCeEEE--EEcCCCcEEEEeecCC
Q 018248 148 PMVMACPG-LLKGQVRVEDYG-TKKSKYITAH-A-SRIASIAMTLDGRFVATASSKGTLIRV--FNTMDGSLLQEMRRGA 221 (359)
Q Consensus 148 ~~~l~~~g-~~d~~v~~~~~~-~~~~~~~~~~-~-~~i~~~~~s~~~~~l~~~~~dg~~i~i--wd~~~~~~~~~~~~~~ 221 (359)
.+++.+.. .....|...... ......+..+ . ..+..+.+. .+.++++...++. -++ ++..+ ..+..+...
T Consensus 281 ~ly~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~-~~~l~~~~~~~g~-~~l~~~~~~~-~~~~~l~~~- 356 (686)
T PRK10115 281 RFYLRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLF-TDWLVVEERQRGL-TSLRQINRKT-REVIGIAFD- 356 (686)
T ss_pred EEEEEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEE-CCEEEEEEEeCCE-EEEEEEcCCC-CceEEecCC-
Confidence 45554421 112222222222 2222344444 2 367777776 3345555555665 444 45433 334444311
Q ss_pred CCcceEEEEec--CCCC-EEEEEc---CCCcEEEEEccCCC
Q 018248 222 ERAEIYSLAFS--SNAQ-WLAASS---DKGTVHVFGLKVDS 256 (359)
Q Consensus 222 ~~~~i~~~~~s--~~~~-~l~~~~---~dg~i~iw~~~~~~ 256 (359)
....+..+.++ +++. ++++.+ .-+.+..+|+.+++
T Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~~ 397 (686)
T PRK10115 357 DPAYVTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTGE 397 (686)
T ss_pred CCceEeeecccCCCCCceEEEEEecCCCCCEEEEEECCCCc
Confidence 12233334444 4443 444333 23568888887654
No 385
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=96.76 E-value=0.1 Score=39.70 Aligned_cols=100 Identities=9% Similarity=0.049 Sum_probs=61.6
Q ss_pred CCCEEEEec---CCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEECCCccEEeeec
Q 018248 17 DHGCFATGT---ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDDHENRYLGELS 93 (359)
Q Consensus 17 ~g~~l~~~~---d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~ 93 (359)
+|.++.+.+ ...|++|++.+++......+. ...+..-.+...++.+..... .++.-..+|..+-+++..+.
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~---~~~~FgEGit~~gd~~y~LTw---~egvaf~~d~~t~~~lg~~~ 128 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLA---PDTVFGEGITKLGDYFYQLTW---KEGVAFKYDADTLEELGRFS 128 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceEEEEeecC---CccccccceeeccceEEEEEe---ccceeEEEChHHhhhhcccc
Confidence 344454444 456999999999888777763 222222222333555555554 57899999999999999888
Q ss_pred cCcceeEEEEecceeEEEecC--eEEEEEccc
Q 018248 94 FRSEVKNVRLRRDRIVVVLNQ--KVYVYNFTD 123 (359)
Q Consensus 94 ~~~~v~~~~~~~~~~~~~~d~--~i~i~d~~~ 123 (359)
.+++=+.++..... ++..|| +++.-|.++
T Consensus 129 y~GeGWgLt~d~~~-LimsdGsatL~frdP~t 159 (262)
T COG3823 129 YEGEGWGLTSDDKN-LIMSDGSATLQFRDPKT 159 (262)
T ss_pred cCCcceeeecCCcc-eEeeCCceEEEecCHHH
Confidence 77777776654333 233444 344444443
No 386
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=96.73 E-value=0.22 Score=39.88 Aligned_cols=178 Identities=12% Similarity=0.114 Sum_probs=102.6
Q ss_pred eEEEEEccCCCEEEEec-C--CceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEECCC
Q 018248 9 IHHLALNQDHGCFATGT-E--TGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDDHE 85 (359)
Q Consensus 9 v~~~~~s~~g~~l~~~~-d--~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~~~ 85 (359)
...+.|..+|.++-+.+ - ..|+.+|+++++......+. .....=.+..-++.+...+. .++...+||..+
T Consensus 47 TQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~----~~~FgEGit~~~d~l~qLTW---k~~~~f~yd~~t 119 (264)
T PF05096_consen 47 TQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLP----PRYFGEGITILGDKLYQLTW---KEGTGFVYDPNT 119 (264)
T ss_dssp EEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-T----TT--EEEEEEETTEEEEEES---SSSEEEEEETTT
T ss_pred CccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECC----ccccceeEEEECCEEEEEEe---cCCeEEEEcccc
Confidence 45677777787775555 3 46999999998877666664 22222222223556665665 569999999999
Q ss_pred ccEEeeeccCcceeEEEEecceeEEEec--CeEEEEEcccceeeeeEeccCC--C---ceeeeeecCCCccEEEecCCCC
Q 018248 86 NRYLGELSFRSEVKNVRLRRDRIVVVLN--QKVYVYNFTDLKLVDQIETVVN--P---TGLCDVSQNAGPMVMACPGLLK 158 (359)
Q Consensus 86 ~~~~~~~~~~~~v~~~~~~~~~~~~~~d--~~i~i~d~~~~~~~~~~~~~~~--~---~~~~~~~~~~~~~~l~~~g~~d 158 (359)
-+.+.++..+.+=+.++.. +..++..| ..|+.+|..+.+....+..... + .+-+.+. + +.+.|-.=..|
T Consensus 120 l~~~~~~~y~~EGWGLt~d-g~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~--G~IyANVW~td 195 (264)
T PF05096_consen 120 LKKIGTFPYPGEGWGLTSD-GKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-N--GKIYANVWQTD 195 (264)
T ss_dssp TEEEEEEE-SSS--EEEEC-SSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-T--TEEEEEETTSS
T ss_pred ceEEEEEecCCcceEEEcC-CCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-c--CEEEEEeCCCC
Confidence 9999999877777778733 22333344 5788888877776666654322 1 2223332 2 23344333456
Q ss_pred eeEEEEecCCeeeEEeec---------------ccccccEEEEccCCcEEEEEe
Q 018248 159 GQVRVEDYGTKKSKYITA---------------HASRIASIAMTLDGRFVATAS 197 (359)
Q Consensus 159 ~~v~~~~~~~~~~~~~~~---------------~~~~i~~~~~s~~~~~l~~~~ 197 (359)
..++|+..++.....+.- ...-.+.||+.|....|...+
T Consensus 196 ~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG 249 (264)
T PF05096_consen 196 RIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG 249 (264)
T ss_dssp EEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred eEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence 666667777766554421 124578999988766554443
No 387
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.58 E-value=0.016 Score=54.39 Aligned_cols=67 Identities=16% Similarity=0.169 Sum_probs=51.6
Q ss_pred CCcEEEEEeCCCCeEEEEEcCCCcEEEEeecCCCCcceEEEEecCCCCEEEEEcCCCcEEEEEccCCCC
Q 018248 189 DGRFVATASSKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSNAQWLAASSDKGTVHVFGLKVDSG 257 (359)
Q Consensus 189 ~~~~l~~~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~ 257 (359)
.+..++.|+..|. +-..|.... .-.-..+....++|++++|+.+|+.++.|-.+|.|.+||+..++.
T Consensus 98 ~~~~ivi~Ts~gh-vl~~d~~~n-L~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~ 164 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGH-VLLSDMTGN-LGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKI 164 (1206)
T ss_pred eeeeEEEEcCchh-hhhhhhhcc-cchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcc
Confidence 4557888988888 988887543 111122222457999999999999999999999999999998763
No 388
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=96.55 E-value=0.25 Score=38.37 Aligned_cols=192 Identities=15% Similarity=0.201 Sum_probs=104.5
Q ss_pred CCceEEEEcCCCcceeeeecccCCCCceeEEEEecc---CCEEEEEecCCCCCCeEEEEECC--CccEEeee---c---c
Q 018248 26 ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFR---SNIICLVNSGPHQSNKVMIWDDH--ENRYLGEL---S---F 94 (359)
Q Consensus 26 d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~---~~~~~~~~~~~~~d~~i~iwd~~--~~~~~~~~---~---~ 94 (359)
.+.|.-||.... ...+..++ ++...-.+.|- +...++ +.+ ..-.|--||-. .....+++ + .
T Consensus 36 ag~v~r~D~~qn-~v~ra~ie----~p~~ag~ilpv~~~~q~~~v-~~G--~kf~i~nwd~~~~~a~v~~t~~ev~~d~k 107 (310)
T KOG4499|consen 36 AGEVHRYDIEQN-KVYRAKIE----GPPSAGFILPVEGGPQEFAV-GCG--SKFVIVNWDGVSESAKVYRTLFEVQPDRK 107 (310)
T ss_pred cCceehhhhhhh-heEEEEEe----cCcceeEEEEecCCCceEEE-eec--ceEEEEEcccccceeeeeeeccccCchHH
Confidence 677777888753 33444442 33222122221 223332 322 22445557632 22333332 1 2
Q ss_pred CcceeEEEEecceeEEE------------ecCeEEEEEcccceeeeeEeccCCCceeeeeecCCCccEEEecCCCCeeEE
Q 018248 95 RSEVKNVRLRRDRIVVV------------LNQKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAGPMVMACPGLLKGQVR 162 (359)
Q Consensus 95 ~~~v~~~~~~~~~~~~~------------~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~v~ 162 (359)
....++-..+|+|++.+ ..|.++.|-. .++ +..+...-.--+.++|..+.+.++.. .+.+-+|.
T Consensus 108 knR~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~-~h~-v~~i~~~v~IsNgl~Wd~d~K~fY~i--Dsln~~V~ 183 (310)
T KOG4499|consen 108 KNRLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLA-GHQ-VELIWNCVGISNGLAWDSDAKKFYYI--DSLNYEVD 183 (310)
T ss_pred hcccccCccCCCCceeeeeeccccccccccccEEEEecc-CCC-ceeeehhccCCccccccccCcEEEEE--ccCceEEe
Confidence 34556677889998876 2456666654 222 22222222223456777666654444 44566666
Q ss_pred EEecCC--------eeeEEeec----ccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcEEEEeecCCCCcceEEEE
Q 018248 163 VEDYGT--------KKSKYITA----HASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLA 230 (359)
Q Consensus 163 ~~~~~~--------~~~~~~~~----~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~ 230 (359)
-|+.+. +.+..++. .....-.+++..+|++.++.-..++ |...|..+|+.+.+++. ....|++++
T Consensus 184 a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~-V~~~dp~tGK~L~eikl--Pt~qitscc 260 (310)
T KOG4499|consen 184 AYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGT-VQKVDPTTGKILLEIKL--PTPQITSCC 260 (310)
T ss_pred eeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcE-EEEECCCCCcEEEEEEc--CCCceEEEE
Confidence 666332 11222221 1112234566667887777777777 99999999999999987 456899999
Q ss_pred ec
Q 018248 231 FS 232 (359)
Q Consensus 231 ~s 232 (359)
|-
T Consensus 261 Fg 262 (310)
T KOG4499|consen 261 FG 262 (310)
T ss_pred ec
Confidence 96
No 389
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=96.50 E-value=0.0099 Score=45.59 Aligned_cols=103 Identities=15% Similarity=0.169 Sum_probs=66.6
Q ss_pred EEecCCCCeeEEEEecCC--eeeEEeecccccccEE-EEccCCcEEEEEeCCCCeEEEEEcCCCcEEEEeecCCCC-cce
Q 018248 151 MACPGLLKGQVRVEDYGT--KKSKYITAHASRIASI-AMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRRGAER-AEI 226 (359)
Q Consensus 151 l~~~g~~d~~v~~~~~~~--~~~~~~~~~~~~i~~~-~~s~~~~~l~~~~~dg~~i~iwd~~~~~~~~~~~~~~~~-~~i 226 (359)
+++ |..+|.|++|.... ............|.++ .--.++.+..+++.+|. |+.|++.-++.+...-. |. .++
T Consensus 73 ~~v-G~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~-ir~~n~~p~k~~g~~g~--h~~~~~ 148 (238)
T KOG2444|consen 73 LMV-GTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGR-IRACNIKPNKVLGYVGQ--HNFESG 148 (238)
T ss_pred EEe-ecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCc-eeeeccccCceeeeecc--ccCCCc
Confidence 454 77899999966652 2222222222233222 22235557889999999 99999988777655543 44 456
Q ss_pred EEEEecCCCCEEEEE--cCCCcEEEEEccCCCC
Q 018248 227 YSLAFSSNAQWLAAS--SDKGTVHVFGLKVDSG 257 (359)
Q Consensus 227 ~~~~~s~~~~~l~~~--~~dg~i~iw~~~~~~~ 257 (359)
..+..+..++.|+.+ +.|..++.|++..-..
T Consensus 149 e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~~~d 181 (238)
T KOG2444|consen 149 EELIVVGSDEFLKIADTSHDRVLKKWNVEKIKD 181 (238)
T ss_pred ceeEEecCCceEEeeccccchhhhhcchhhhhc
Confidence 666666667777777 7888888888877553
No 390
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=96.47 E-value=0.4 Score=39.70 Aligned_cols=236 Identities=15% Similarity=0.135 Sum_probs=102.5
Q ss_pred CCCCceEEEEEccCCCEEEEecCCceEEEEcCCCcceeeeecccCCCC-ceeEEEEeccCCEEEEEecCCCCCCeEEEEE
Q 018248 4 PDPITIHHLALNQDHGCFATGTETGFRVYLSDPYKPIMRRDFDRNPRG-GTQLVSMLFRSNIICLVNSGPHQSNKVMIWD 82 (359)
Q Consensus 4 ~h~~~v~~~~~s~~g~~l~~~~d~~i~iw~~~~~~~~~~~~~~~~h~~-~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd 82 (359)
+-..++..|.|..+..-+++|..+. |+....+.............. .....++.+.++...+++ ..+ +.+..
T Consensus 14 ~t~~~l~dV~F~d~~~G~~VG~~g~--il~T~DGG~tW~~~~~~~~~~~~~~l~~I~f~~~~g~ivG----~~g-~ll~T 86 (302)
T PF14870_consen 14 PTDKPLLDVAFVDPNHGWAVGAYGT--ILKTTDGGKTWQPVSLDLDNPFDYHLNSISFDGNEGWIVG----EPG-LLLHT 86 (302)
T ss_dssp S-SS-EEEEEESSSS-EEEEETTTE--EEEESSTTSS-EE-----S-----EEEEEEEETTEEEEEE----ETT-EEEEE
T ss_pred CCCCceEEEEEecCCEEEEEecCCE--EEEECCCCccccccccCCCccceeeEEEEEecCCceEEEc----CCc-eEEEe
Confidence 4467899999997777788887764 455554443332221100111 233334444455555555 234 33333
Q ss_pred CCCccEEeeec----cCcceeEEEEecceeEE-E-ecCeEEEEEccc-ceeeeeE-eccCCCceeeeeecCCCccEEEec
Q 018248 83 DHENRYLGELS----FRSEVKNVRLRRDRIVV-V-LNQKVYVYNFTD-LKLVDQI-ETVVNPTGLCDVSQNAGPMVMACP 154 (359)
Q Consensus 83 ~~~~~~~~~~~----~~~~v~~~~~~~~~~~~-~-~d~~i~i~d~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~ 154 (359)
...|+.-..+. .+.....+....++... + ..|. ||...+ ++.-+.+ ......+..+..++++. ++++
T Consensus 87 ~DgG~tW~~v~l~~~lpgs~~~i~~l~~~~~~l~~~~G~--iy~T~DgG~tW~~~~~~~~gs~~~~~r~~dG~--~vav- 161 (302)
T PF14870_consen 87 TDGGKTWERVPLSSKLPGSPFGITALGDGSAELAGDRGA--IYRTTDGGKTWQAVVSETSGSINDITRSSDGR--YVAV- 161 (302)
T ss_dssp SSTTSS-EE----TT-SS-EEEEEEEETTEEEEEETT----EEEESSTTSSEEEEE-S----EEEEEE-TTS---EEEE-
T ss_pred cCCCCCcEEeecCCCCCCCeeEEEEcCCCcEEEEcCCCc--EEEeCCCCCCeeEcccCCcceeEeEEECCCCc--EEEE-
Confidence 34454433332 23333444443333333 3 3333 333322 3222222 22233344444555554 4655
Q ss_pred CCCCeeEEE-EecCCeeeEEe-ecccccccEEEEccCCcEEEEEeCCCCeEEEEEc-CCCcEEEE--eecCCCCcceEEE
Q 018248 155 GLLKGQVRV-EDYGTKKSKYI-TAHASRIASIAMTLDGRFVATASSKGTLIRVFNT-MDGSLLQE--MRRGAERAEIYSL 229 (359)
Q Consensus 155 g~~d~~v~~-~~~~~~~~~~~-~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~-~~~~~~~~--~~~~~~~~~i~~~ 229 (359)
+ ..|.+.+ |+.....-... +.....|.+|.|+|++.+.+.+ ..|. |++=+. ...+.-.. .......-.+.++
T Consensus 162 s-~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~-~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~ 238 (302)
T PF14870_consen 162 S-SRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQ-IQFSDDPDDGETWSEPIIPIKTNGYGILDL 238 (302)
T ss_dssp E-TTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTE-EEEEE-TTEEEEE---B-TTSS--S-EEEE
T ss_pred E-CcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEe-CCcE-EEEccCCCCccccccccCCcccCceeeEEE
Confidence 3 4777777 66554322222 3346789999999998876655 6666 776651 22222211 1111122248899
Q ss_pred EecCCCCEEEEEcCCCcEEEEEccCCC
Q 018248 230 AFSSNAQWLAASSDKGTVHVFGLKVDS 256 (359)
Q Consensus 230 ~~s~~~~~l~~~~~dg~i~iw~~~~~~ 256 (359)
+|.+++...++|+ .|. .+...+.++
T Consensus 239 a~~~~~~~wa~gg-~G~-l~~S~DgGk 263 (302)
T PF14870_consen 239 AYRPPNEIWAVGG-SGT-LLVSTDGGK 263 (302)
T ss_dssp EESSSS-EEEEES-TT--EEEESSTTS
T ss_pred EecCCCCEEEEeC-Ccc-EEEeCCCCc
Confidence 9999888777665 443 333444444
No 391
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=96.34 E-value=0.55 Score=39.92 Aligned_cols=198 Identities=8% Similarity=-0.022 Sum_probs=91.0
Q ss_pred EEeccCCEEEEEecCCCCCCeEEEEECCCccEEeeeccC-cceeEEEEecceeEEE---ecCeEEEEEcccceeeeeEec
Q 018248 57 SMLFRSNIICLVNSGPHQSNKVMIWDDHENRYLGELSFR-SEVKNVRLRRDRIVVV---LNQKVYVYNFTDLKLVDQIET 132 (359)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~~ 132 (359)
+|..+++.+++.+... ....+.+.|+.+++..+.-... .......++|+...++ .+..|+-.|+++.+....+..
T Consensus 42 ~ft~dG~kllF~s~~d-g~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~ 120 (386)
T PF14583_consen 42 CFTDDGRKLLFASDFD-GNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEERVVYEV 120 (386)
T ss_dssp -B-TTS-EEEEEE-TT-SS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--EEEEEE-
T ss_pred CcCCCCCEEEEEeccC-CCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCcEEEEEEC
Confidence 4566778888877543 4678888899998877665533 3344566778776654 456899999988876655555
Q ss_pred cCCCceeeeeecCCCccEEEecC--CC--------------------CeeEEEEecCCeeeEEeecccccccEEEEccCC
Q 018248 133 VVNPTGLCDVSQNAGPMVMACPG--LL--------------------KGQVRVEDYGTKKSKYITAHASRIASIAMTLDG 190 (359)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~l~~~g--~~--------------------d~~v~~~~~~~~~~~~~~~~~~~i~~~~~s~~~ 190 (359)
+...+....+..+.+...++..- .. .+.+.|+.. ....+.+..-...+.-+.|+|..
T Consensus 121 p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~-tG~~~~v~~~~~wlgH~~fsP~d 199 (386)
T PF14583_consen 121 PDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLK-TGERKVVFEDTDWLGHVQFSPTD 199 (386)
T ss_dssp -TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETT-T--EEEEEEESS-EEEEEEETTE
T ss_pred CcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECC-CCceeEEEecCccccCcccCCCC
Confidence 55555445554443333332110 00 122222333 33444454456678889999965
Q ss_pred cE-EEEEeC---CCCeEEEEEcC-CCcEEEEeecCCCCcceEEEEecCCCCEEEEEc-----CCCcEEEEEccCCC
Q 018248 191 RF-VATASS---KGTLIRVFNTM-DGSLLQEMRRGAERAEIYSLAFSSNAQWLAASS-----DKGTVHVFGLKVDS 256 (359)
Q Consensus 191 ~~-l~~~~~---dg~~i~iwd~~-~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-----~dg~i~iw~~~~~~ 256 (359)
.- |+-|-+ +..--+||-+. .+.....+..+.....+..=-|.|||..|.--+ .+..|.-+|+.+++
T Consensus 200 p~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~ 275 (386)
T PF14583_consen 200 PTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGE 275 (386)
T ss_dssp EEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT--
T ss_pred CCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEEEeecCCCCceEEEeeCCCCCC
Confidence 54 444432 11002455443 344444444332223444556889998665422 12335555555543
No 392
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=96.33 E-value=0.99 Score=42.74 Aligned_cols=279 Identities=13% Similarity=0.137 Sum_probs=143.9
Q ss_pred CCceEEEEEccCCCEEEEec-CCceEEEEcC--CCcceeee--ecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEE
Q 018248 6 PITIHHLALNQDHGCFATGT-ETGFRVYLSD--PYKPIMRR--DFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMI 80 (359)
Q Consensus 6 ~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~--~~~~~~~~--~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~i 80 (359)
+..|.-..|-.|..+|.++. ||.+.-|.++ ++...-.+ .+- ..++..-.++.....-+++. .|.-..+
T Consensus 583 PRSIl~~~~e~d~~yLlvalgdG~l~~fv~d~~tg~lsd~Kk~~lG---t~P~~Lr~f~sk~~t~vfa~----sdrP~vi 655 (1096)
T KOG1897|consen 583 PRSILLTTFEGDIHYLLVALGDGALLYFVLDINTGQLSDRKKVTLG---TQPISLRTFSSKSRTAVFAL----SDRPTVI 655 (1096)
T ss_pred chheeeEEeeccceEEEEEcCCceEEEEEEEcccceEccccccccC---CCCcEEEEEeeCCceEEEEe----CCCCEEE
Confidence 44566666767788888888 9987666554 43322222 231 45555556665555555555 3555666
Q ss_pred EECCCccEEee-eccCcceeEE-EEe----cceeEEEecCeEEEEEcccceee--eeEeccCCCceeeeeecCCCccEEE
Q 018248 81 WDDHENRYLGE-LSFRSEVKNV-RLR----RDRIVVVLNQKVYVYNFTDLKLV--DQIETVVNPTGLCDVSQNAGPMVMA 152 (359)
Q Consensus 81 wd~~~~~~~~~-~~~~~~v~~~-~~~----~~~~~~~~d~~i~i~d~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~ 152 (359)
|. .+++.... +..+ .+..+ .|+ |++..++..+.+++..+..-+.+ +++..+.. ...+++.+. +..+.+
T Consensus 656 Y~-~n~kLv~spls~k-ev~~~c~f~s~a~~d~l~~~~~~~l~i~tid~iqkl~irtvpl~~~-prrI~~q~~-sl~~~v 731 (1096)
T KOG1897|consen 656 YS-SNGKLVYSPLSLK-EVNHMCPFNSDAYPDSLASANGGALTIGTIDEIQKLHIRTVPLGES-PRRICYQES-SLTFGV 731 (1096)
T ss_pred Ee-cCCcEEEeccchH-HhhhhcccccccCCceEEEecCCceEEEEecchhhcceeeecCCCC-hhheEeccc-ceEEEE
Confidence 65 33433322 2211 12111 122 34455557788888776543332 22332222 223444331 111111
Q ss_pred ec------C---CCCeeEEE-EecCCeeeEEeecccc-------cccEEEEccC-CcEEEEEeC----------CCCeEE
Q 018248 153 CP------G---LLKGQVRV-EDYGTKKSKYITAHAS-------RIASIAMTLD-GRFVATASS----------KGTLIR 204 (359)
Q Consensus 153 ~~------g---~~d~~v~~-~~~~~~~~~~~~~~~~-------~i~~~~~s~~-~~~l~~~~~----------dg~~i~ 204 (359)
.+ + .....+.. ...+.+....+..|+- .+.++.|..| +.++++|.. .|. |.
T Consensus 732 ~s~r~e~~~~~~~ee~~~s~l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GR-Ii 810 (1096)
T KOG1897|consen 732 LSNRIESSAEYYGEEYEVSFLRVLDQNTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGR-II 810 (1096)
T ss_pred EecccccchhhcCCcceEEEEEEecCCceeEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccce-EE
Confidence 10 0 01111221 2222333333433322 4555668777 677877753 467 88
Q ss_pred EEEcCCCcEEEEeecCCCCcceEEEEecCCCCEEEEEcCCCcEEEEEccCCCCCCCCCccccCCCCCccCCCCCceeeee
Q 018248 205 VFNTMDGSLLQEMRRGAERAEIYSLAFSSNAQWLAASSDKGTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSAISSFR 284 (359)
Q Consensus 205 iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (359)
+|....++.+.......-.+.+.++.. -+|++||.- ...|++|++.+.+....
T Consensus 811 vfe~~e~~~L~~v~e~~v~Gav~aL~~-fngkllA~I--n~~vrLye~t~~~eLr~------------------------ 863 (1096)
T KOG1897|consen 811 VFEFEELNSLELVAETVVKGAVYALVE-FNGKLLAGI--NQSVRLYEWTTERELRI------------------------ 863 (1096)
T ss_pred EEEEecCCceeeeeeeeeccceeehhh-hCCeEEEec--CcEEEEEEccccceehh------------------------
Confidence 888777444444332223455555543 268887754 45799999988753210
Q ss_pred EeeeecceEEecccceeEEeecCCcEEEeeecccCCEEEEEecCCeEEEEEeCCCCC
Q 018248 285 FIRGVLPKYFSSKWSMAQFRLPENVQYLVGFGRQNNTIVIVGLDGSYYKCEFDPMKG 341 (359)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~ 341 (359)
+. -+..++..+...-.|..+++|..-+++.+..+..++|
T Consensus 864 ----------e~--------~~~~~~~aL~l~v~gdeI~VgDlm~Sitll~y~~~eg 902 (1096)
T KOG1897|consen 864 ----------EC--------NISNPIIALDLQVKGDEIAVGDLMRSITLLQYKGDEG 902 (1096)
T ss_pred ----------hh--------cccCCeEEEEEEecCcEEEEeeccceEEEEEEeccCC
Confidence 00 0113445666666777888888877777777766543
No 393
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=96.22 E-value=0.48 Score=38.02 Aligned_cols=184 Identities=11% Similarity=0.146 Sum_probs=104.2
Q ss_pred CCCceeEEEEec-cCCEEEEEecCCCCCCeEEEEECCCccEEeeeccCcce--eEEEEecceeEEE--ecCeEEEEEccc
Q 018248 49 PRGGTQLVSMLF-RSNIICLVNSGPHQSNKVMIWDDHENRYLGELSFRSEV--KNVRLRRDRIVVV--LNQKVYVYNFTD 123 (359)
Q Consensus 49 h~~~v~~~~~~~-~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v--~~~~~~~~~~~~~--~d~~i~i~d~~~ 123 (359)
|......-.+.+ +++.+.-.+ |.+....|+.+|+.+++.......+... ..+....+..+.+ .++...+||..+
T Consensus 41 Hd~~aFTQGL~~~~~g~LyEST-G~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d~l~qLTWk~~~~f~yd~~t 119 (264)
T PF05096_consen 41 HDPTAFTQGLEFLDDGTLYEST-GLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILGDKLYQLTWKEGTGFVYDPNT 119 (264)
T ss_dssp --TT-EEEEEEEEETTEEEEEE-CSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEETTEEEEEESSSSEEEEEETTT
T ss_pred CCCcccCccEEecCCCEEEEeC-CCCCcEEEEEEECCCCcEEEEEECCccccceeEEEECCEEEEEEecCCeEEEEcccc
Confidence 555544444444 334444444 3334568999999999988877644333 3566666665555 899999999999
Q ss_pred ceeeeeEeccCCCceeeeeecCCCccEEEecCCCCeeEEEEec-CCeeeEEeecc--c---ccccEEEEccCCcEEEEEe
Q 018248 124 LKLVDQIETVVNPTGLCDVSQNAGPMVMACPGLLKGQVRVEDY-GTKKSKYITAH--A---SRIASIAMTLDGRFVATAS 197 (359)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~v~~~~~-~~~~~~~~~~~--~---~~i~~~~~s~~~~~l~~~~ 197 (359)
.+.+.++.-.. .-+-++ .+++. ++.+-| ...++..+. +.+..+.+... . ..++.+.+- +|...|=.=
T Consensus 120 l~~~~~~~y~~-EGWGLt--~dg~~-Li~SDG--S~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~IyANVW 192 (264)
T PF05096_consen 120 LKKIGTFPYPG-EGWGLT--SDGKR-LIMSDG--SSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGKIYANVW 192 (264)
T ss_dssp TEEEEEEE-SS-S--EEE--ECSSC-EEEE-S--SSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTEEEEEET
T ss_pred ceEEEEEecCC-cceEEE--cCCCE-EEEECC--ccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCEEEEEeC
Confidence 99988886543 233333 56665 344423 335555443 33444443322 1 235556664 676666555
Q ss_pred CCCCeEEEEEcCCCcEEEEeecC-------------CCCcceEEEEecCCCCEE-EEE
Q 018248 198 SKGTLIRVFNTMDGSLLQEMRRG-------------AERAEIYSLAFSSNAQWL-AAS 241 (359)
Q Consensus 198 ~dg~~i~iwd~~~~~~~~~~~~~-------------~~~~~i~~~~~s~~~~~l-~~~ 241 (359)
.... |...|..+|+....+... ....-.+.+++.|..+.| +||
T Consensus 193 ~td~-I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG 249 (264)
T PF05096_consen 193 QTDR-IVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG 249 (264)
T ss_dssp TSSE-EEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred CCCe-EEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence 5556 888899999887765310 012457899998876654 554
No 394
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.06 E-value=0.6 Score=37.59 Aligned_cols=223 Identities=17% Similarity=0.184 Sum_probs=119.7
Q ss_pred eEEEEEccCC-CEEEEec-CCc-eEEEEcCCCcceeeeecc-cCCCCceeEEEEeccCCEEEEEecCCC-CCCeEEEEEC
Q 018248 9 IHHLALNQDH-GCFATGT-ETG-FRVYLSDPYKPIMRRDFD-RNPRGGTQLVSMLFRSNIICLVNSGPH-QSNKVMIWDD 83 (359)
Q Consensus 9 v~~~~~s~~g-~~l~~~~-d~~-i~iw~~~~~~~~~~~~~~-~~h~~~v~~~~~~~~~~~~~~~~~~~~-~d~~i~iwd~ 83 (359)
-..|+|+|.- .-++.+. -|+ ..++|.+..++.....-. .-|- -.--.+++++.++...-++.. ..|.|-+||.
T Consensus 70 ~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHf--yGHGvfs~dG~~LYATEndfd~~rGViGvYd~ 147 (366)
T COG3490 70 GHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHF--YGHGVFSPDGRLLYATENDFDPNRGVIGVYDA 147 (366)
T ss_pred cCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCcee--ecccccCCCCcEEEeecCCCCCCCceEEEEec
Confidence 3456677643 3455555 444 567887766554332211 0010 011235666666554332211 4588999997
Q ss_pred CCc-cEEeeec-cCcceeEEEEecceeEEE-ecCeEEEE-Ec-------ccce------------eeeeEecc----CCC
Q 018248 84 HEN-RYLGELS-FRSEVKNVRLRRDRIVVV-LNQKVYVY-NF-------TDLK------------LVDQIETV----VNP 136 (359)
Q Consensus 84 ~~~-~~~~~~~-~~~~v~~~~~~~~~~~~~-~d~~i~i~-d~-------~~~~------------~~~~~~~~----~~~ 136 (359)
..+ +.+.++. |.-....+.+.+||+.++ .+|-|... |. .+.+ .+.+.... ...
T Consensus 148 r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~lS 227 (366)
T COG3490 148 REGFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQLS 227 (366)
T ss_pred ccccceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCchhhhhcc
Confidence 754 5556665 666778899999999988 77766665 22 2222 22111111 111
Q ss_pred ceeeeeecCCCccEEEecCCCCeeEEE-EecC---------------CeeeEEee-------cccccccEEEEccCCcEE
Q 018248 137 TGLCDVSQNAGPMVMACPGLLKGQVRV-EDYG---------------TKKSKYIT-------AHASRIASIAMTLDGRFV 193 (359)
Q Consensus 137 ~~~~~~~~~~~~~~l~~~g~~d~~v~~-~~~~---------------~~~~~~~~-------~~~~~i~~~~~s~~~~~l 193 (359)
+.-++..+ ||+|.. -... +++++.+. .-...|-+++.+.+..++
T Consensus 228 iRHld~g~-------------dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV 294 (366)
T COG3490 228 IRHLDIGR-------------DGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLV 294 (366)
T ss_pred eeeeeeCC-------------CCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeE
Confidence 22222222 344333 1111 22222221 123467788888777777
Q ss_pred EEEeCCCCeEEEEEcCCCcEEEEeecCCCCcceEEEEecCCCCEEEEEcCCCcEEEEEc
Q 018248 194 ATASSKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSNAQWLAASSDKGTVHVFGL 252 (359)
Q Consensus 194 ~~~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~ 252 (359)
+..+-.|....+||..+|..+..-... ....++- ...-++..+.+|.+.++.-
T Consensus 295 ~lTSP~GN~~vi~da~tG~vv~~a~l~----daaGva~--~~~gf~vssg~G~~~~~s~ 347 (366)
T COG3490 295 ALTSPRGNRAVIWDAATGAVVSEAALP----DAAGVAA--AKGGFAVSSGQGRIIFYSR 347 (366)
T ss_pred EEecCCCCeEEEEEcCCCcEEeccccc----cccccee--ccCceEEecCCceEEeccc
Confidence 777776664789999999887655431 2223332 3334555567888888743
No 395
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=96.04 E-value=0.36 Score=44.04 Aligned_cols=74 Identities=19% Similarity=0.168 Sum_probs=51.0
Q ss_pred cccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcEEEEeecCCCCcceEEEEec--CCCCEEEEEcCCCcEEEEEcc
Q 018248 178 ASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFS--SNAQWLAASSDKGTVHVFGLK 253 (359)
Q Consensus 178 ~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s--~~~~~l~~~~~dg~i~iw~~~ 253 (359)
-..+.-+.-|.-++ +|....++..+.|||.+.+....+-.- .....|.++.|. |||+.+++.+....|.++--.
T Consensus 29 i~~~~li~gss~~k-~a~V~~~~~~LtIWD~~~~~lE~~~~f-~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~ 104 (631)
T PF12234_consen 29 ISNPSLISGSSIKK-IAVVDSSRSELTIWDTRSGVLEYEESF-SEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQL 104 (631)
T ss_pred CCCcceEeecccCc-EEEEECCCCEEEEEEcCCcEEEEeeee-cCCCceeeceeeecCCCCEEEEEEcCcEEEEEEcc
Confidence 33445555555444 444455555599999988875544332 135789999986 799999999999999998653
No 396
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=95.79 E-value=0.02 Score=52.76 Aligned_cols=141 Identities=18% Similarity=0.278 Sum_probs=79.5
Q ss_pred CCeEEEEECCCccEEeee-c-cCcceeEEEEecc-eeEEE-ecCeEEEEEcc--cceeeeeE-----eccCCCceeeeee
Q 018248 75 SNKVMIWDDHENRYLGEL-S-FRSEVKNVRLRRD-RIVVV-LNQKVYVYNFT--DLKLVDQI-----ETVVNPTGLCDVS 143 (359)
Q Consensus 75 d~~i~iwd~~~~~~~~~~-~-~~~~v~~~~~~~~-~~~~~-~d~~i~i~d~~--~~~~~~~~-----~~~~~~~~~~~~~ 143 (359)
.+-+++-+..+...-..+ + +.+.+-.++|... ...+. .-|.+.+|++. .|+....+ .........+.|+
T Consensus 110 ~~~vrvaN~~~sm~~~~l~kgf~G~v~dl~fah~~~pk~~~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wc 189 (1283)
T KOG1916|consen 110 ENGVRVANQEPSMRHNELAKGFPGGVGDLQFAHTKCPKGRRLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWC 189 (1283)
T ss_pred hhhhhhccCcchhHHHHHHhcCCCCcccccccccCChHHHHHhhhhheeehHhhccccccceEEeecCcCCCCcceeeec
Confidence 355666654433211122 2 5677777777432 11222 45778888873 34433332 2233344556666
Q ss_pred cCCC-ccEEEecCCCCeeEEE--EecCCeeeEEeecccccccEE-----------EEccCCcEEEEEeCCCCeEEEEEcC
Q 018248 144 QNAG-PMVMACPGLLKGQVRV--EDYGTKKSKYITAHASRIASI-----------AMTLDGRFVATASSKGTLIRVFNTM 209 (359)
Q Consensus 144 ~~~~-~~~l~~~g~~d~~v~~--~~~~~~~~~~~~~~~~~i~~~-----------~~s~~~~~l~~~~~dg~~i~iwd~~ 209 (359)
|--- ..++.+ +..++.+++ |+.... ..+.+|...+..+ .+||||+.++.++.||. ++.|.+.
T Consensus 190 p~~~~~~~ic~-~~~~~~i~lL~~~ra~~--~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~-v~f~Qiy 265 (1283)
T KOG1916|consen 190 PIAVNKVYICY-GLKGGEIRLLNINRALR--SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGS-VGFYQIY 265 (1283)
T ss_pred ccccccceeee-ccCCCceeEeeechHHH--HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCc-cceeeee
Confidence 5322 234554 778889998 444333 4445566555443 36899999999999998 8888653
Q ss_pred -----CCcEEEEeec
Q 018248 210 -----DGSLLQEMRR 219 (359)
Q Consensus 210 -----~~~~~~~~~~ 219 (359)
...++...+.
T Consensus 266 i~g~~~~rclhewkp 280 (1283)
T KOG1916|consen 266 ITGKIVHRCLHEWKP 280 (1283)
T ss_pred eeccccHhhhhccCC
Confidence 2344555554
No 397
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=95.72 E-value=0.42 Score=41.72 Aligned_cols=143 Identities=13% Similarity=0.180 Sum_probs=85.6
Q ss_pred cceeEEE----ecCeEEEEEcccceeeeeEeccCCCceeeeeecCCC-------ccEEEecCCCCeeEEEEec-CCeeeE
Q 018248 105 RDRIVVV----LNQKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAG-------PMVMACPGLLKGQVRVEDY-GTKKSK 172 (359)
Q Consensus 105 ~~~~~~~----~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~l~~~g~~d~~v~~~~~-~~~~~~ 172 (359)
.+..++. ....++-.|++.|+.+.....+... .+.+.|..+ +.++. -+..+..+|+.+ ++..+.
T Consensus 477 ~dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvG--lS~~svFrIDPR~~gNKi~ 552 (776)
T COG5167 477 NDSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVG--LSDYSVFRIDPRARGNKIK 552 (776)
T ss_pred CCcceEEecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEEe--ecccceEEecccccCCcee
Confidence 3444554 3446788888999999988877653 677777543 22222 223455555333 333333
Q ss_pred EeecccccccEEEEcc----CCcEEEEEeCCCCeEEEEEcCCCcEEEEeecCCCCcceEEEEecCCCCEEEEEcCCCcEE
Q 018248 173 YITAHASRIASIAMTL----DGRFVATASSKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSNAQWLAASSDKGTVH 248 (359)
Q Consensus 173 ~~~~~~~~i~~~~~s~----~~~~l~~~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~ 248 (359)
... ....++.-.||. ..-++|+++..|. |++||.-.......+++ -...|..+..+.+|+++++.+. ..+.
T Consensus 553 v~e-sKdY~tKn~Fss~~tTesGyIa~as~kGD-irLyDRig~rAKtalP~--lG~aIk~idvta~Gk~ilaTCk-~yll 627 (776)
T COG5167 553 VVE-SKDYKTKNKFSSGMTTESGYIAAASRKGD-IRLYDRIGKRAKTALPG--LGDAIKHIDVTANGKHILATCK-NYLL 627 (776)
T ss_pred eee-ehhccccccccccccccCceEEEecCCCc-eeeehhhcchhhhcCcc--cccceeeeEeecCCcEEEEeec-ceEE
Confidence 222 222233333332 3348999999999 99999433222223332 3457889999999998876664 4688
Q ss_pred EEEccCCC
Q 018248 249 VFGLKVDS 256 (359)
Q Consensus 249 iw~~~~~~ 256 (359)
+-|+.-..
T Consensus 628 L~d~~ik~ 635 (776)
T COG5167 628 LTDVPIKY 635 (776)
T ss_pred EEeccccc
Confidence 88876543
No 398
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=95.60 E-value=2.2 Score=40.60 Aligned_cols=111 Identities=12% Similarity=0.032 Sum_probs=66.3
Q ss_pred CCEEEEec-CCceEEEEcCCCcceeeeecccCCCC-----ceeEEEEe----------------ccCCEEEEEecCCCCC
Q 018248 18 HGCFATGT-ETGFRVYLSDPYKPIMRRDFDRNPRG-----GTQLVSML----------------FRSNIICLVNSGPHQS 75 (359)
Q Consensus 18 g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~h~~-----~v~~~~~~----------------~~~~~~~~~~~~~~~d 75 (359)
+..|.+++ ++.|.-.|.++++++........... ....+.+. .....+++.+ .|
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T----~D 269 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPT----SD 269 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEec----CC
Confidence 34555556 88888889988888777655310000 00111111 1223455544 68
Q ss_pred CeEEEEECCCccEEeeeccCccee-------------EEEEec---ceeEEE--e----------cCeEEEEEcccceee
Q 018248 76 NKVMIWDDHENRYLGELSFRSEVK-------------NVRLRR---DRIVVV--L----------NQKVYVYNFTDLKLV 127 (359)
Q Consensus 76 ~~i~iwd~~~~~~~~~~~~~~~v~-------------~~~~~~---~~~~~~--~----------d~~i~i~d~~~~~~~ 127 (359)
+.+.-.|.++|+....+..++.|. .+.-.| ++.+++ . +|.|+-+|.++|+.+
T Consensus 270 g~LiALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~ 349 (764)
T TIGR03074 270 ARLIALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALV 349 (764)
T ss_pred CeEEEEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEe
Confidence 999999999999987765433321 011111 344444 1 578999999999998
Q ss_pred eeEec
Q 018248 128 DQIET 132 (359)
Q Consensus 128 ~~~~~ 132 (359)
..+..
T Consensus 350 W~~~~ 354 (764)
T TIGR03074 350 WAWDP 354 (764)
T ss_pred eEEec
Confidence 88753
No 399
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.60 E-value=0.54 Score=38.03 Aligned_cols=80 Identities=14% Similarity=0.246 Sum_probs=63.1
Q ss_pred ecccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcEEEEeecCCCCcceEEEEecCCCCEEEEEcCCCcEEEEEccC
Q 018248 175 TAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSNAQWLAASSDKGTVHVFGLKV 254 (359)
Q Consensus 175 ~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~ 254 (359)
.+-...+.++.|+|+.+.|++...... -.|+=...|+.+.++.... -.....+.+..++++.++--.++.+.++.+..
T Consensus 82 ~g~~~nvS~LTynp~~rtLFav~n~p~-~iVElt~~GdlirtiPL~g-~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~ 159 (316)
T COG3204 82 LGETANVSSLTYNPDTRTLFAVTNKPA-AIVELTKEGDLIRTIPLTG-FSDPETIEYIGGNQFVIVDERDRALYLFTVDA 159 (316)
T ss_pred ccccccccceeeCCCcceEEEecCCCc-eEEEEecCCceEEEecccc-cCChhHeEEecCCEEEEEehhcceEEEEEEcC
Confidence 344556999999999998888887777 6677667899998887532 23556788888898888888889999999987
Q ss_pred CC
Q 018248 255 DS 256 (359)
Q Consensus 255 ~~ 256 (359)
..
T Consensus 160 ~t 161 (316)
T COG3204 160 DT 161 (316)
T ss_pred Cc
Confidence 65
No 400
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=95.56 E-value=0.83 Score=40.73 Aligned_cols=147 Identities=10% Similarity=0.057 Sum_probs=84.5
Q ss_pred cceeEEEEecceeEEE-----ecCeEEEEEcccceeeeeEeccCCCceeeeeecCC---CccEEEecCCCCeeEEEEecC
Q 018248 96 SEVKNVRLRRDRIVVV-----LNQKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNA---GPMVMACPGLLKGQVRVEDYG 167 (359)
Q Consensus 96 ~~v~~~~~~~~~~~~~-----~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~~~g~~d~~v~~~~~~ 167 (359)
.++..++|....+.+. .+|.+++=| .+.+..| ..+..+.|+|-. ...+||.. ....|.+|...
T Consensus 20 HPvhGlaWTDGkqVvLT~L~l~~gE~kfGd---s~viGqF----EhV~GlsW~P~~~~~~paLLAVQ--HkkhVtVWqL~ 90 (671)
T PF15390_consen 20 HPVHGLAWTDGKQVVLTDLQLHNGEPKFGD---SKVIGQF----EHVHGLSWAPPCTADTPALLAVQ--HKKHVTVWQLC 90 (671)
T ss_pred ccccceEecCCCEEEEEeeeeeCCccccCC---ccEeecc----ceeeeeeecCcccCCCCceEEEe--ccceEEEEEec
Confidence 4677888875544444 455554433 2233333 335567777753 22456653 56788889875
Q ss_pred Cee------eEEeecc-----cccccEEEEccCCcEEEEEeCCCCeEEEEEcCCC--cEEEEeecCCCCcceEEEEecCC
Q 018248 168 TKK------SKYITAH-----ASRIASIAMTLDGRFVATASSKGTLIRVFNTMDG--SLLQEMRRGAERAEIYSLAFSSN 234 (359)
Q Consensus 168 ~~~------~~~~~~~-----~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~--~~~~~~~~~~~~~~i~~~~~s~~ 234 (359)
... +.....+ .--...+.|+|....|++-..... =.+++++.. .....++ ..+.|.|.+|.+|
T Consensus 91 ~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dv-SV~~sV~~d~srVkaDi~---~~G~IhCACWT~D 166 (671)
T PF15390_consen 91 PSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDV-SVLPSVHCDSSRVKADIK---TSGLIHCACWTKD 166 (671)
T ss_pred cCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCce-eEeeeeeeCCceEEEecc---CCceEEEEEecCc
Confidence 311 1111111 112346789999988877665543 345555433 3333444 4578999999999
Q ss_pred CCEEEEEcC-CCcEEEEEccCC
Q 018248 235 AQWLAASSD-KGTVHVFGLKVD 255 (359)
Q Consensus 235 ~~~l~~~~~-dg~i~iw~~~~~ 255 (359)
|+.|+.+-. .=.-+|||-...
T Consensus 167 G~RLVVAvGSsLHSyiWd~~qK 188 (671)
T PF15390_consen 167 GQRLVVAVGSSLHSYIWDSAQK 188 (671)
T ss_pred CCEEEEEeCCeEEEEEecCchh
Confidence 998876543 334677875443
No 401
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=95.52 E-value=0.5 Score=43.17 Aligned_cols=104 Identities=8% Similarity=0.108 Sum_probs=71.9
Q ss_pred EEEccCCCEEEEec-CCceEEEEcCCCcceeeeecccCCCCceeEEEEeccC--CEEEEEecCCCCCCeEEEEECC----
Q 018248 12 LALNQDHGCFATGT-ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRS--NIICLVNSGPHQSNKVMIWDDH---- 84 (359)
Q Consensus 12 ~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~--~~~~~~~~~~~~d~~i~iwd~~---- 84 (359)
+.-|.-++.-++-+ ...+.|||...+...+...+ ...+.|..+.|...+ +.++.++ ..+.|.++.-.
T Consensus 35 i~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f--~~~~~I~dLDWtst~d~qsiLaVG----f~~~v~l~~Q~R~dy 108 (631)
T PF12234_consen 35 ISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESF--SEDDPIRDLDWTSTPDGQSILAVG----FPHHVLLYTQLRYDY 108 (631)
T ss_pred EeecccCcEEEEECCCCEEEEEEcCCcEEEEeeee--cCCCceeeceeeecCCCCEEEEEE----cCcEEEEEEccchhh
Confidence 33344444444444 55699999998877777776 356788888887544 5556666 67899988531
Q ss_pred -----CccEEeeec---c-CcceeEEEEecceeEEE-ecCeEEEEEc
Q 018248 85 -----ENRYLGELS---F-RSEVKNVRLRRDRIVVV-LNQKVYVYNF 121 (359)
Q Consensus 85 -----~~~~~~~~~---~-~~~v~~~~~~~~~~~~~-~d~~i~i~d~ 121 (359)
+-..+..+. + +.+|.+..|.++|.+++ .++.+.|+|-
T Consensus 109 ~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sGNqlfv~dk 155 (631)
T PF12234_consen 109 TNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSGNQLFVFDK 155 (631)
T ss_pred hcCCcccceeEEEEeecCCCCCccceeEecCCeEEEEeCCEEEEECC
Confidence 113344443 3 36899999999999998 9999999985
No 402
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=95.42 E-value=0.079 Score=28.89 Aligned_cols=32 Identities=22% Similarity=0.404 Sum_probs=26.4
Q ss_pred cceEEEEecCCC---CEEEEEcCCCcEEEEEccCC
Q 018248 224 AEIYSLAFSSNA---QWLAASSDKGTVHVFGLKVD 255 (359)
Q Consensus 224 ~~i~~~~~s~~~---~~l~~~~~dg~i~iw~~~~~ 255 (359)
+.|.++.|||+. .+|+.+-..|.|.|+|+++.
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~ 35 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN 35 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence 368899999854 48888888899999999963
No 403
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=95.38 E-value=1.1 Score=42.11 Aligned_cols=92 Identities=16% Similarity=0.220 Sum_probs=55.1
Q ss_pred cceEEEEecCCCCEEEEEcCCCcEEEEEccCCCCCCCCCccccCCCCCccC-CCCCceeeeeEeeeecceEEecccceeE
Q 018248 224 AEIYSLAFSSNAQWLAASSDKGTVHVFGLKVDSGSPGTSKLHSASEPNLSS-KNSSAISSFRFIRGVLPKYFSSKWSMAQ 302 (359)
Q Consensus 224 ~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (359)
-.|..+.++|+|++|+..|..| |.|-.+...-.. .+. .+.......... .+-..++...
T Consensus 85 f~v~~i~~n~~g~~lal~G~~~-v~V~~LP~r~g~-------------~~~~~~g~~~i~Crt~-~v~~~~~~~~----- 144 (717)
T PF10168_consen 85 FEVHQISLNPTGSLLALVGPRG-VVVLELPRRWGK-------------NGEFEDGKKEINCRTV-PVDERFFTSN----- 144 (717)
T ss_pred eeEEEEEECCCCCEEEEEcCCc-EEEEEeccccCc-------------cccccCCCcceeEEEE-EechhhccCC-----
Confidence 3688999999999999998866 677666432100 000 000000000000 0011122111
Q ss_pred EeecCCcEEEeeeccc---CCEEEEEecCCeEEEEEeCC
Q 018248 303 FRLPENVQYLVGFGRQ---NNTIVIVGLDGSYYKCEFDP 338 (359)
Q Consensus 303 ~~~~~~~v~~~~~s~~---~~~l~~~~~dg~i~v~~~~~ 338 (359)
+...|..+.|+|. +..|++-++|+++++|++..
T Consensus 145 ---~~~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~ 180 (717)
T PF10168_consen 145 ---SSLEIKQVRWHPWSESDSHLVVLTSDNTLRLYDISD 180 (717)
T ss_pred ---CCceEEEEEEcCCCCCCCeEEEEecCCEEEEEecCC
Confidence 2356788999986 58999999999999999964
No 404
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.19 E-value=2.6 Score=38.93 Aligned_cols=208 Identities=14% Similarity=0.140 Sum_probs=103.9
Q ss_pred EEccCCCEEEEec-C----------CceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEE
Q 018248 13 ALNQDHGCFATGT-E----------TGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIW 81 (359)
Q Consensus 13 ~~s~~g~~l~~~~-d----------~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iw 81 (359)
+..|-|.-+|+.- + -.|+||+... .......+. | +.+-.+.|+-+. .++++. .+|++.+|
T Consensus 39 a~Ap~gGpIAV~r~p~~~~~~~~a~~~I~If~~sG-~lL~~~~w~--~-~~lI~mgWs~~e-eLI~v~----k~g~v~Vy 109 (829)
T KOG2280|consen 39 ACAPFGGPIAVTRSPSKLVPLYSARPYIRIFNISG-QLLGRILWK--H-GELIGMGWSDDE-ELICVQ----KDGTVHVY 109 (829)
T ss_pred EecccCCceEEEecccccccccccceeEEEEeccc-cchHHHHhc--C-CCeeeecccCCc-eEEEEe----ccceEEEe
Confidence 3445555555554 2 1267777653 333223332 2 244444554333 344445 68999999
Q ss_pred ECCCccEEee--e--c-cCcceeEEEEecceeEEE-ecCeEEEEEcccceeeeeEec-cCC--CceeeeeecCCC-ccEE
Q 018248 82 DDHENRYLGE--L--S-FRSEVKNVRLRRDRIVVV-LNQKVYVYNFTDLKLVDQIET-VVN--PTGLCDVSQNAG-PMVM 151 (359)
Q Consensus 82 d~~~~~~~~~--~--~-~~~~v~~~~~~~~~~~~~-~d~~i~i~d~~~~~~~~~~~~-~~~--~~~~~~~~~~~~-~~~l 151 (359)
++.. +.+.. . . ....|....+..+|-.+. .+|++.+-+-.....+..++. +.. +..+....+.+. ...+
T Consensus 110 ~~~g-e~ie~~svg~e~~~~~I~ec~~f~~GVavlt~~g~v~~i~~~~~~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~l 188 (829)
T KOG2280|consen 110 GLLG-EFIESNSVGFESQMSDIVECRFFHNGVAVLTVSGQVILINGVEEPKLRKMPDIPYNELPKSCWTVFQPHRQSTIL 188 (829)
T ss_pred ecch-hhhcccccccccccCceeEEEEecCceEEEecCCcEEEEcCCCcchhhhCCCCCCccCCCcceeEecCCCcceeE
Confidence 9643 33333 2 1 334566666666777766 777766655322222233322 111 112222222221 1111
Q ss_pred EecCCCCeeEEEEecC--CeeeEEeecccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcEEEEeecCCCCcceEEE
Q 018248 152 ACPGLLKGQVRVEDYG--TKKSKYITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRRGAERAEIYSL 229 (359)
Q Consensus 152 ~~~g~~d~~v~~~~~~--~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~i~~~ 229 (359)
+-..-..+. .+...+ ......+......+..+..||+.++|+--...|. |.+-+....+.+.++....+ .+...+
T Consensus 189 l~v~~~v~~-~~~q~~~~~~q~~~~~~~~~~~~ki~VS~n~~~laLyt~~G~-i~~vs~D~~~~lce~~~~~~-~~p~qm 265 (829)
T KOG2280|consen 189 LDVDVAVGL-HICQVEESRVQLHALSWPNSSVVKISVSPNRRFLALYTETGK-IWVVSIDLSQILCEFNCTDH-DPPKQM 265 (829)
T ss_pred Eeechhhhh-cccceecccccccccCCCCceEEEEEEcCCcceEEEEecCCc-EEEEecchhhhhhccCCCCC-CchHhc
Confidence 110100010 001111 1112222222456788999999999999999999 99988887777777764323 233356
Q ss_pred EecC
Q 018248 230 AFSS 233 (359)
Q Consensus 230 ~~s~ 233 (359)
+|.-
T Consensus 266 ~Wcg 269 (829)
T KOG2280|consen 266 AWCG 269 (829)
T ss_pred eeec
Confidence 6643
No 405
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=95.15 E-value=0.11 Score=28.35 Aligned_cols=32 Identities=13% Similarity=0.268 Sum_probs=25.1
Q ss_pred ccccEEEEccCCc---EEEEEeCCCCeEEEEEcCCC
Q 018248 179 SRIASIAMTLDGR---FVATASSKGTLIRVFNTMDG 211 (359)
Q Consensus 179 ~~i~~~~~s~~~~---~l~~~~~dg~~i~iwd~~~~ 211 (359)
+.+.+++|+|+.. +|+.+-..|. |.|+|++++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~-vhi~D~R~~ 35 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGR-VHIVDTRSN 35 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCe-EEEEEcccC
Confidence 3578999998544 7777777777 999999853
No 406
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=95.01 E-value=0.49 Score=35.78 Aligned_cols=31 Identities=3% Similarity=-0.022 Sum_probs=25.6
Q ss_pred CcEEEeeecccC------CEEEEEecCCeEEEEEeCC
Q 018248 308 NVQYLVGFGRQN------NTIVIVGLDGSYYKCEFDP 338 (359)
Q Consensus 308 ~~v~~~~~s~~~------~~l~~~~~dg~i~v~~~~~ 338 (359)
..+..++|||-| ..|++.+.+|.|.+|.-..
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 478899999954 5799999999999997653
No 407
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=94.97 E-value=3.7 Score=39.55 Aligned_cols=182 Identities=13% Similarity=0.045 Sum_probs=98.8
Q ss_pred EEEEEcccceeeeeEeccCC----CceeeeeecCCCccEEEecCCC----------CeeEEEEe--cCCeeeEEeecccc
Q 018248 116 VYVYNFTDLKLVDQIETVVN----PTGLCDVSQNAGPMVMACPGLL----------KGQVRVED--YGTKKSKYITAHAS 179 (359)
Q Consensus 116 i~i~d~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~l~~~g~~----------d~~v~~~~--~~~~~~~~~~~~~~ 179 (359)
|++.|..+++.+..++...+ .+..+.|+..+...++++.+.. +|.++.+. .+++.+..+..-.-
T Consensus 855 I~~~d~~s~~~~~~~~l~~ne~a~~v~~~~fs~~~~~~~~~v~~~~~~~l~~~~~~~g~~ytyk~~~~g~~lellh~T~~ 934 (1205)
T KOG1898|consen 855 IRVFDPKSGKIICLVELGQNEAAFSVCAVDFSSSEYQPFVAVGVATTEQLDSKSISSGFVYTYKFVRNGDKLELLHKTEI 934 (1205)
T ss_pred EEEEcCCCCceEEEEeecCCcchhheeeeeeccCCCceEEEEEeeccccccccccCCCceEEEEEEecCceeeeeeccCC
Confidence 77777777776666654333 1233445544444233332211 22333321 22232222221111
Q ss_pred cccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcEEEEeecCCCCcceEEEEecCCCCEEEEEcCCCcEEEEEccCCCCCC
Q 018248 180 RIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSNAQWLAASSDKGTVHVFGLKVDSGSP 259 (359)
Q Consensus 180 ~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~ 259 (359)
+-.-.++.|...++.+|-.+ . +++||+...++++..+...-+..|..+.+ .+..++.|...-.+.++..+.....
T Consensus 935 ~~~v~Ai~~f~~~~LagvG~-~-l~~YdlG~K~lLRk~e~k~~p~~Is~iqt--~~~RI~VgD~qeSV~~~~y~~~~n~- 1009 (1205)
T KOG1898|consen 935 PGPVGAICPFQGRVLAGVGR-F-LRLYDLGKKKLLRKCELKFIPNRISSIQT--YGARIVVGDIQESVHFVRYRREDNQ- 1009 (1205)
T ss_pred CccceEEeccCCEEEEeccc-E-EEEeeCChHHHHhhhhhccCceEEEEEee--cceEEEEeeccceEEEEEEecCCCe-
Confidence 12234556766666655433 4 99999988888776665434567888887 4667888876666777666654421
Q ss_pred CCCccccCCCCCccCCCCCceeeeeEeeeecceEEecccceeEEeecCCcEEEeeecccCCEEEEEecCCeEEEEEeCCC
Q 018248 260 GTSKLHSASEPNLSSKNSSAISSFRFIRGVLPKYFSSKWSMAQFRLPENVQYLVGFGRQNNTIVIVGLDGSYYKCEFDPM 339 (359)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~~ 339 (359)
+..+.+.. -..+|+++.+- |-..++.+..=|.+++-+++++
T Consensus 1010 ------------------------------l~~fadD~--------~pR~Vt~~~~l-D~~tvagaDrfGNi~~vR~P~d 1050 (1205)
T KOG1898|consen 1010 ------------------------------LIVFADDP--------VPRHVTALELL-DYDTVAGADRFGNIAVVRIPPD 1050 (1205)
T ss_pred ------------------------------EEEEeCCC--------ccceeeEEEEe-cCCceeeccccCcEEEEECCCc
Confidence 11111110 01244544443 4467888888899999998876
Q ss_pred CC
Q 018248 340 KG 341 (359)
Q Consensus 340 ~~ 341 (359)
..
T Consensus 1051 ~~ 1052 (1205)
T KOG1898|consen 1051 VS 1052 (1205)
T ss_pred ch
Confidence 43
No 408
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=94.84 E-value=0.64 Score=43.60 Aligned_cols=76 Identities=13% Similarity=0.249 Sum_probs=53.4
Q ss_pred ccccEEEEccCCcEEEEEeCCCCeEEEEEcCC----------CcEE---EEee------cCCCCcceEEEEecCC---CC
Q 018248 179 SRIASIAMTLDGRFVATASSKGTLIRVFNTMD----------GSLL---QEMR------RGAERAEIYSLAFSSN---AQ 236 (359)
Q Consensus 179 ~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~----------~~~~---~~~~------~~~~~~~i~~~~~s~~---~~ 236 (359)
-.|..+.++|+|++|+..+..| |.|-.+.. |+.. +++. .......|..+.|+|. +.
T Consensus 85 f~v~~i~~n~~g~~lal~G~~~--v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~ 162 (717)
T PF10168_consen 85 FEVHQISLNPTGSLLALVGPRG--VVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDS 162 (717)
T ss_pred eeEEEEEECCCCCEEEEEcCCc--EEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCC
Confidence 4688899999999999998877 55555431 1111 1111 1113457899999996 47
Q ss_pred EEEEEcCCCcEEEEEccCCC
Q 018248 237 WLAASSDKGTVHVFGLKVDS 256 (359)
Q Consensus 237 ~l~~~~~dg~i~iw~~~~~~ 256 (359)
.|+.-+.|+++|+||+....
T Consensus 163 ~l~vLtsdn~lR~y~~~~~~ 182 (717)
T PF10168_consen 163 HLVVLTSDNTLRLYDISDPQ 182 (717)
T ss_pred eEEEEecCCEEEEEecCCCC
Confidence 88888999999999997544
No 409
>PRK10115 protease 2; Provisional
Probab=94.83 E-value=3.7 Score=38.85 Aligned_cols=198 Identities=9% Similarity=-0.004 Sum_probs=99.9
Q ss_pred eeEEEEeccCCEEEEEecCCC-CCCeEEEEECCCccEEeeeccCcceeEEEEecceeEEE---e--c----CeEEEEEcc
Q 018248 53 TQLVSMLFRSNIICLVNSGPH-QSNKVMIWDDHENRYLGELSFRSEVKNVRLRRDRIVVV---L--N----QKVYVYNFT 122 (359)
Q Consensus 53 v~~~~~~~~~~~~~~~~~~~~-~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~---~--d----~~i~i~d~~ 122 (359)
+..+.++++++.+++...... ....|++.|+.+++.+...- ...-..++|.+|+..++ . + ..|+.+++.
T Consensus 129 l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i-~~~~~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~lg 207 (686)
T PRK10115 129 LGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELL-DNVEPSFVWANDSWTFYYVRKHPVTLLPYQVWRHTIG 207 (686)
T ss_pred EeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccc-cCcceEEEEeeCCCEEEEEEecCCCCCCCEEEEEECC
Confidence 555678888888877643211 34568899998886432221 11114589999886555 2 2 378888887
Q ss_pred cc--eeeeeEeccCCCceeeeeec-CCCccEEEecCCCCeeEEEEec---CCeeeEEeecccccccEEEEccCCcEEEEE
Q 018248 123 DL--KLVDQIETVVNPTGLCDVSQ-NAGPMVMACPGLLKGQVRVEDY---GTKKSKYITAHASRIASIAMTLDGRFVATA 196 (359)
Q Consensus 123 ~~--~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~g~~d~~v~~~~~---~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~ 196 (359)
++ +....+...........+.. +++.+++.+....++.+.+++. .+.. ..+..+...+..-..+..+.+.+..
T Consensus 208 t~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ly~~t 286 (686)
T PRK10115 208 TPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEP-FVFLPRRKDHEYSLDHYQHRFYLRS 286 (686)
T ss_pred CChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCc-eEEEECCCCCEEEEEeCCCEEEEEE
Confidence 76 33334443333333233333 6666555555555667777553 2222 2222222222211122333333333
Q ss_pred eCCC-C-eEEEEEcCCCcEEEEeecCCCCcceEEEEecCCCCEEEEEcCCCcEEEEEcc
Q 018248 197 SSKG-T-LIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSNAQWLAASSDKGTVHVFGLK 253 (359)
Q Consensus 197 ~~dg-~-~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~ 253 (359)
..++ . .|...++.+......+..+.....|..+.++ ...++++...+|.-+++-+.
T Consensus 287 n~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~-~~~l~~~~~~~g~~~l~~~~ 344 (686)
T PRK10115 287 NRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLF-TDWLVVEERQRGLTSLRQIN 344 (686)
T ss_pred cCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEE-CCEEEEEEEeCCEEEEEEEc
Confidence 2221 2 0333344321112233322123468888887 33456666667776665554
No 410
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=94.77 E-value=0.3 Score=38.43 Aligned_cols=69 Identities=17% Similarity=0.279 Sum_probs=52.1
Q ss_pred EccCCcEEEEEeCCCCeEEEEEcCCCcEEEEe------ecC------CCCcceEEEEecCCCCEEEEEcCCCcEEEEEcc
Q 018248 186 MTLDGRFVATASSKGTLIRVFNTMDGSLLQEM------RRG------AERAEIYSLAFSSNAQWLAASSDKGTVHVFGLK 253 (359)
Q Consensus 186 ~s~~~~~l~~~~~dg~~i~iwd~~~~~~~~~~------~~~------~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~ 253 (359)
+..++.+|++.+.+|. +++||+.+++.+..- -.. .....|..+.++.+|.-|++-+ +|..+.|+.+
T Consensus 18 l~~~~~~Ll~iT~~G~-l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~~ 95 (219)
T PF07569_consen 18 LECNGSYLLAITSSGL-LYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSPD 95 (219)
T ss_pred EEeCCCEEEEEeCCCe-EEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEeccc
Confidence 4567889999999999 999999988764332 100 1345789999999998887765 4778999887
Q ss_pred CCC
Q 018248 254 VDS 256 (359)
Q Consensus 254 ~~~ 256 (359)
-+.
T Consensus 96 L~~ 98 (219)
T PF07569_consen 96 LGC 98 (219)
T ss_pred cce
Confidence 654
No 411
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=94.76 E-value=2.1 Score=35.63 Aligned_cols=146 Identities=16% Similarity=0.247 Sum_probs=68.4
Q ss_pred ceeEEEEecceeEEEecCeEEEEEcccceeeeeEec----cCCCceeeeeecCCCccEEEecCCCCeeEEEEecCCeeeE
Q 018248 97 EVKNVRLRRDRIVVVLNQKVYVYNFTDLKLVDQIET----VVNPTGLCDVSQNAGPMVMACPGLLKGQVRVEDYGTKKSK 172 (359)
Q Consensus 97 ~v~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~l~~~g~~d~~v~~~~~~~~~~~ 172 (359)
...++.|..+.-+++.+..+.+.....++.-..+.. ...+....++.+ ....++ + ..|.|+.-...++.-+
T Consensus 63 ~l~~I~f~~~~g~ivG~~g~ll~T~DgG~tW~~v~l~~~lpgs~~~i~~l~~--~~~~l~--~-~~G~iy~T~DgG~tW~ 137 (302)
T PF14870_consen 63 HLNSISFDGNEGWIVGEPGLLLHTTDGGKTWERVPLSSKLPGSPFGITALGD--GSAELA--G-DRGAIYRTTDGGKTWQ 137 (302)
T ss_dssp EEEEEEEETTEEEEEEETTEEEEESSTTSS-EE----TT-SS-EEEEEEEET--TEEEEE--E-TT--EEEESSTTSSEE
T ss_pred eEEEEEecCCceEEEcCCceEEEecCCCCCcEEeecCCCCCCCeeEEEEcCC--CcEEEE--c-CCCcEEEeCCCCCCee
Confidence 466778876666666443444444444443333321 112222233322 222233 2 3566665333333322
Q ss_pred E-eecccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcEEEEeecCCCCcceEEEEecCCCCEEEEEcCCCcEEEEE
Q 018248 173 Y-ITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSNAQWLAASSDKGTVHVFG 251 (359)
Q Consensus 173 ~-~~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~ 251 (359)
. ...-.+.+..+.-++||+++++++.-.. ..-||--...-...-+. ....|.+|.|+|++.+.+.+ ..|.|++=+
T Consensus 138 ~~~~~~~gs~~~~~r~~dG~~vavs~~G~~-~~s~~~G~~~w~~~~r~--~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~ 213 (302)
T PF14870_consen 138 AVVSETSGSINDITRSSDGRYVAVSSRGNF-YSSWDPGQTTWQPHNRN--SSRRIQSMGFSPDGNLWMLA-RGGQIQFSD 213 (302)
T ss_dssp EEE-S----EEEEEE-TTS-EEEEETTSSE-EEEE-TT-SS-EEEE----SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE
T ss_pred EcccCCcceeEeEEECCCCcEEEEECcccE-EEEecCCCccceEEccC--ccceehhceecCCCCEEEEe-CCcEEEEcc
Confidence 2 3344567888889999999888765544 56777432212222221 34689999999998876654 778777766
No 412
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=94.64 E-value=0.14 Score=39.61 Aligned_cols=97 Identities=11% Similarity=0.091 Sum_probs=53.7
Q ss_pred CCEEEEec-CCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCE--EEEEecCCCCCCeEEEEECCCccEEeeec-
Q 018248 18 HGCFATGT-ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNI--ICLVNSGPHQSNKVMIWDDHENRYLGELS- 93 (359)
Q Consensus 18 g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~--~~~~~~~~~~d~~i~iwd~~~~~~~~~~~- 93 (359)
+..+++|+ +|.|.+|+.........+.. ...-......|.... +.++++ .|+.|+.|+++-++.+....
T Consensus 70 ~~~~~vG~~dg~v~~~n~n~~g~~~d~~~----s~~e~i~~~Ip~~~~~~~~c~~~---~dg~ir~~n~~p~k~~g~~g~ 142 (238)
T KOG2444|consen 70 SAKLMVGTSDGAVYVFNWNLEGAHSDRVC----SGEESIDLGIPNGRDSSLGCVGA---QDGRIRACNIKPNKVLGYVGQ 142 (238)
T ss_pred CceEEeecccceEEEecCCccchHHHhhh----cccccceeccccccccceeEEec---cCCceeeeccccCceeeeecc
Confidence 35677777 99999999873322221111 111112222333332 444444 58999999998888777665
Q ss_pred cC-cceeEEEEecceeEEE-----ecCeEEEEEc
Q 018248 94 FR-SEVKNVRLRRDRIVVV-----LNQKVYVYNF 121 (359)
Q Consensus 94 ~~-~~v~~~~~~~~~~~~~-----~d~~i~i~d~ 121 (359)
|. .++..+..+..+.++. .|..++.|++
T Consensus 143 h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~v 176 (238)
T KOG2444|consen 143 HNFESGEELIVVGSDEFLKIADTSHDRVLKKWNV 176 (238)
T ss_pred ccCCCcceeEEecCCceEEeeccccchhhhhcch
Confidence 55 4444444444443333 4555566655
No 413
>PHA02713 hypothetical protein; Provisional
Probab=94.59 E-value=3.7 Score=37.79 Aligned_cols=21 Identities=5% Similarity=0.028 Sum_probs=14.5
Q ss_pred cCCEEEEEecCC--eEEEEEeCC
Q 018248 318 QNNTIVIVGLDG--SYYKCEFDP 338 (359)
Q Consensus 318 ~~~~l~~~~~dg--~i~v~~~~~ 338 (359)
+++..++||.|| .+..|+...
T Consensus 512 ~~~iyv~Gg~~~~~~~e~yd~~~ 534 (557)
T PHA02713 512 DNTIMMLHCYESYMLQDTFNVYT 534 (557)
T ss_pred CCEEEEEeeecceeehhhcCccc
Confidence 667888888888 555565443
No 414
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=94.52 E-value=2.2 Score=34.96 Aligned_cols=215 Identities=12% Similarity=0.143 Sum_probs=113.6
Q ss_pred eEEEEEccCCCEEEEec-CCceEEEEcCCC-----cceeeeecc--cC--CCCceeEEEEeccC------------CEEE
Q 018248 9 IHHLALNQDHGCFATGT-ETGFRVYLSDPY-----KPIMRRDFD--RN--PRGGTQLVSMLFRS------------NIIC 66 (359)
Q Consensus 9 v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~-----~~~~~~~~~--~~--h~~~v~~~~~~~~~------------~~~~ 66 (359)
-+.|+++|.+.+-++.. .+...+||.++. ...+...+. .+ .....+-+.+.... ...+
T Consensus 25 ~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~Fi 104 (336)
T TIGR03118 25 AWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRFL 104 (336)
T ss_pred cceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeEE
Confidence 46899999987767666 788999999721 122223322 01 01122333333211 2234
Q ss_pred EEecCCCCCCeEEEEECCCccE-----Eeeec--cCcce-eEEEEecc--eeEEE----ecCeEEEEEcccceeeeeEec
Q 018248 67 LVNSGPHQSNKVMIWDDHENRY-----LGELS--FRSEV-KNVRLRRD--RIVVV----LNQKVYVYNFTDLKLVDQIET 132 (359)
Q Consensus 67 ~~~~~~~~d~~i~iwd~~~~~~-----~~~~~--~~~~v-~~~~~~~~--~~~~~----~d~~i~i~d~~~~~~~~~~~~ 132 (359)
+++ +||+|.-|...-+.. ...+. ....| ..+++... +.++. ..++|.++|-. -+++..-..
T Consensus 105 f~t----EdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~-f~~~~~~g~ 179 (336)
T TIGR03118 105 FVT----EDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGS-FRPPPLPGS 179 (336)
T ss_pred EEe----CCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCc-cccccCCCC
Confidence 555 789999998533222 12222 12333 34555432 33333 77889998842 222211000
Q ss_pred cCCCceeeeeecCCCccEEEecCCCCeeEEE-EecCCeeeEEeecccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCC
Q 018248 133 VVNPTGLCDVSQNAGPMVMACPGLLKGQVRV-EDYGTKKSKYITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDG 211 (359)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~l~~~g~~d~~v~~-~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~ 211 (359)
...+---..+.|-+ +.. -.+.++| |..+ .++++.=+.+..-|. |-+||+ +|
T Consensus 180 F~DP~iPagyAPFn----Iqn---ig~~lyVtYA~q-------------------d~~~~d~v~G~G~G~-VdvFd~-~G 231 (336)
T TIGR03118 180 FIDPALPAGYAPFN----VQN---LGGTLYVTYAQQ-------------------DADRNDEVAGAGLGY-VNVFTL-NG 231 (336)
T ss_pred ccCCCCCCCCCCcc----eEE---ECCeEEEEEEec-------------------CCcccccccCCCcce-EEEEcC-CC
Confidence 11110011223322 222 1345665 4433 122222234445567 899985 78
Q ss_pred cEEEEeecCCCCcceEEEEecC------CCCEEEEEcCCCcEEEEEccCCC
Q 018248 212 SLLQEMRRGAERAEIYSLAFSS------NAQWLAASSDKGTVHVFGLKVDS 256 (359)
Q Consensus 212 ~~~~~~~~~~~~~~i~~~~~s~------~~~~l~~~~~dg~i~iw~~~~~~ 256 (359)
..++++.....-...+.|+..| .|.+|+---.||+|..||..+++
T Consensus 232 ~l~~r~as~g~LNaPWG~a~APa~FG~~sg~lLVGNFGDG~InaFD~~sG~ 282 (336)
T TIGR03118 232 QLLRRVASSGRLNAPWGLAIAPESFGSLSGALLVGNFGDGTINAYDPQSGA 282 (336)
T ss_pred cEEEEeccCCcccCCceeeeChhhhCCCCCCeEEeecCCceeEEecCCCCc
Confidence 8888876443445667787765 46677766679999999998876
No 415
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.52 E-value=1.3 Score=38.21 Aligned_cols=139 Identities=7% Similarity=0.062 Sum_probs=90.8
Q ss_pred EEEEccCCCEEEEecCCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEECCCccEEe
Q 018248 11 HLALNQDHGCFATGTETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDDHENRYLG 90 (359)
Q Consensus 11 ~~~~s~~g~~l~~~~d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~ 90 (359)
.+-|....+.|.+...|.+.=|-+.+...-....+.....+++..+.|+++.+.+++-- .+.+|.+++....+...
T Consensus 27 gvFfDDaNkqlfavrSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnkilAVQR----~~~~v~f~nf~~d~~~l 102 (657)
T KOG2377|consen 27 GVFFDDANKQLFAVRSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNKILAVQR----TSKTVDFCNFIPDNSQL 102 (657)
T ss_pred ceeeccCcceEEEEecCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcceEEEEe----cCceEEEEecCCCchhh
Confidence 34455555566655577777787765443222333223467899999999998888776 67999999975444433
Q ss_pred eec-----cCcceeEEEEecceeEEE-ecCeEEEEEcccc-eeeeeEeccCCCceeeeeecCCCccEEEe
Q 018248 91 ELS-----FRSEVKNVRLRRDRIVVV-LNQKVYVYNFTDL-KLVDQIETVVNPTGLCDVSQNAGPMVMAC 153 (359)
Q Consensus 91 ~~~-----~~~~v~~~~~~~~~~~~~-~d~~i~i~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 153 (359)
.+. ....|....|+.+..+.. .+..+-+|..... +.++..+.+.-.+....|+++..-.++++
T Consensus 103 ~~~~~ck~k~~~IlGF~W~~s~e~A~i~~~G~e~y~v~pekrslRlVks~~~nvnWy~yc~et~v~LL~t 172 (657)
T KOG2377|consen 103 EYTQECKTKNANILGFCWTSSTEIAFITDQGIEFYQVLPEKRSLRLVKSHNLNVNWYMYCPETAVILLST 172 (657)
T ss_pred HHHHHhccCcceeEEEEEecCeeEEEEecCCeEEEEEchhhhhhhhhhhcccCccEEEEccccceEeeec
Confidence 332 335588999988755544 8888888876433 33455566677777788888776544444
No 416
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=94.48 E-value=0.34 Score=38.20 Aligned_cols=61 Identities=13% Similarity=0.263 Sum_probs=44.8
Q ss_pred EeccCCEEEEEecCCCCCCeEEEEECCCccEEeee---------------ccCcceeEEEEecceeEEE--ecCeEEEEE
Q 018248 58 MLFRSNIICLVNSGPHQSNKVMIWDDHENRYLGEL---------------SFRSEVKNVRLRRDRIVVV--LNQKVYVYN 120 (359)
Q Consensus 58 ~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~---------------~~~~~v~~~~~~~~~~~~~--~d~~i~i~d 120 (359)
+...+++++.++ .+|.+++||+.+++.+..- .....|..+.++.+|.-++ .+|..+.|+
T Consensus 18 l~~~~~~Ll~iT----~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~lsng~~y~y~ 93 (219)
T PF07569_consen 18 LECNGSYLLAIT----SSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLSNGDSYSYS 93 (219)
T ss_pred EEeCCCEEEEEe----CCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEeCCCEEEec
Confidence 445677877777 6899999999998765543 1235677788888886666 788888888
Q ss_pred cc
Q 018248 121 FT 122 (359)
Q Consensus 121 ~~ 122 (359)
..
T Consensus 94 ~~ 95 (219)
T PF07569_consen 94 PD 95 (219)
T ss_pred cc
Confidence 63
No 417
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=94.47 E-value=3 Score=38.84 Aligned_cols=75 Identities=16% Similarity=0.223 Sum_probs=51.3
Q ss_pred cccccEEEEc--cCCcEEEEEeCCCCeEEEEEcCCC-cEEEEeecCCCCcceEEEEecCCC---C---EEEEEcCCCcEE
Q 018248 178 ASRIASIAMT--LDGRFVATASSKGTLIRVFNTMDG-SLLQEMRRGAERAEIYSLAFSSNA---Q---WLAASSDKGTVH 248 (359)
Q Consensus 178 ~~~i~~~~~s--~~~~~l~~~~~dg~~i~iwd~~~~-~~~~~~~~~~~~~~i~~~~~s~~~---~---~l~~~~~dg~i~ 248 (359)
....++++++ ...++||+++.... |.||-.... +.......+.+...|.+++|-++. . .|++++-.|.+.
T Consensus 163 ~~SaWGLdIh~~~~~rlIAVSsNs~~-VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~ 241 (717)
T PF08728_consen 163 GASAWGLDIHDYKKSRLIAVSSNSQE-VTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVW 241 (717)
T ss_pred CCceeEEEEEecCcceEEEEecCCce-EEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEE
Confidence 3478899998 77888998888887 888865432 111111111244578888887643 2 788889999999
Q ss_pred EEEcc
Q 018248 249 VFGLK 253 (359)
Q Consensus 249 iw~~~ 253 (359)
+|++.
T Consensus 242 ~~~I~ 246 (717)
T PF08728_consen 242 TFKIK 246 (717)
T ss_pred EEEEE
Confidence 98883
No 418
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=94.37 E-value=2 Score=33.71 Aligned_cols=88 Identities=13% Similarity=0.047 Sum_probs=56.5
Q ss_pred eEEEEeccCCEEEEEecCCCCCCeEEEEE--CCCcc-----EEeeecc----C-cceeEEEEecceeEEE---ecCeEEE
Q 018248 54 QLVSMLFRSNIICLVNSGPHQSNKVMIWD--DHENR-----YLGELSF----R-SEVKNVRLRRDRIVVV---LNQKVYV 118 (359)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~~d~~i~iwd--~~~~~-----~~~~~~~----~-~~v~~~~~~~~~~~~~---~d~~i~i 118 (359)
..++|..+.+.+.+... .+-.|.-|| ..+|. .+..++. + ...-.+++..+|.+.+ ..++|..
T Consensus 161 Ngl~Wd~d~K~fY~iDs---ln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~ 237 (310)
T KOG4499|consen 161 NGLAWDSDAKKFYYIDS---LNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQK 237 (310)
T ss_pred ccccccccCcEEEEEcc---CceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEE
Confidence 34566644454444433 457787787 55553 3333321 1 1223455556666555 7889999
Q ss_pred EEcccceeeeeEeccCCCceeeeeec
Q 018248 119 YNFTDLKLVDQIETVVNPTGLCDVSQ 144 (359)
Q Consensus 119 ~d~~~~~~~~~~~~~~~~~~~~~~~~ 144 (359)
.|..+|+.+..+..+...+++++|--
T Consensus 238 ~dp~tGK~L~eiklPt~qitsccFgG 263 (310)
T KOG4499|consen 238 VDPTTGKILLEIKLPTPQITSCCFGG 263 (310)
T ss_pred ECCCCCcEEEEEEcCCCceEEEEecC
Confidence 99999999999998888888888754
No 419
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=94.06 E-value=2.7 Score=34.11 Aligned_cols=147 Identities=12% Similarity=0.013 Sum_probs=87.8
Q ss_pred ceeEEEEeccCCEEEEEecCCCCCCeEEEEECCCccEEeeeccCcceeEEEEecceeEEE---ecCeEEEEE-ccccee-
Q 018248 52 GTQLVSMLFRSNIICLVNSGPHQSNKVMIWDDHENRYLGELSFRSEVKNVRLRRDRIVVV---LNQKVYVYN-FTDLKL- 126 (359)
Q Consensus 52 ~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~---~d~~i~i~d-~~~~~~- 126 (359)
.+...+++++++.++++.... ....+.++.. +...........+..-.|++++...+ .+...+++. ..+++.
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~-~~~~L~~~~~--~~~~~~~~~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~ 101 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGD-GGRSLYVGPA--GGPVRPVLTGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGE 101 (253)
T ss_pred cccceEECCCCCeEEEEEEcC-CCCEEEEEcC--CCcceeeccCCccccccccCCCCEEEEEcCCCceEEEEecCCCcce
Confidence 577788999999888877221 2355666653 33333322334777788999977666 344445553 223322
Q ss_pred eeeEecc--CCCceeeeeecCCCccEEEecCCCCeeEEEE--ec--CC------eeeEEeecccccccEEEEccCCcEEE
Q 018248 127 VDQIETV--VNPTGLCDVSQNAGPMVMACPGLLKGQVRVE--DY--GT------KKSKYITAHASRIASIAMTLDGRFVA 194 (359)
Q Consensus 127 ~~~~~~~--~~~~~~~~~~~~~~~~~l~~~g~~d~~v~~~--~~--~~------~~~~~~~~~~~~i~~~~~s~~~~~l~ 194 (359)
...+... ...|..+.++|++....++.....++.|.+- .. ++ ............+..++|.+++.+++
T Consensus 102 ~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~V 181 (253)
T PF10647_consen 102 PVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTLVV 181 (253)
T ss_pred eEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCEEEE
Confidence 1122221 1278899999999997777755556788872 11 22 11122223356789999999999777
Q ss_pred EEeCCCC
Q 018248 195 TASSKGT 201 (359)
Q Consensus 195 ~~~~dg~ 201 (359)
.+...+.
T Consensus 182 ~~~~~~~ 188 (253)
T PF10647_consen 182 LGRSAGG 188 (253)
T ss_pred EeCCCCC
Confidence 6655443
No 420
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=93.99 E-value=2.2 Score=32.82 Aligned_cols=171 Identities=11% Similarity=0.132 Sum_probs=88.6
Q ss_pred ccCCEEEEEecCCCCCCeEEEEECCCccEEeeeccC-cceeEEEE--ecceeEEE--ecCeEEEEEcccceeeeeEeccC
Q 018248 60 FRSNIICLVNSGPHQSNKVMIWDDHENRYLGELSFR-SEVKNVRL--RRDRIVVV--LNQKVYVYNFTDLKLVDQIETVV 134 (359)
Q Consensus 60 ~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~-~~v~~~~~--~~~~~~~~--~d~~i~i~d~~~~~~~~~~~~~~ 134 (359)
..++.++ .+.|.+....|++||+.+++.+.+.+.. ..+..--. ..+.-+.. .++.-.++|..+.+.+..+.-..
T Consensus 53 ~~~g~i~-esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~y~G 131 (262)
T COG3823 53 YLDGHIL-ESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFSYEG 131 (262)
T ss_pred eeCCEEE-EeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhhhcccccCC
Confidence 3444443 4444435688999999999988776633 23322112 22333333 88999999998887777664322
Q ss_pred CCceeeeeecCCCccEEEecCCCCeeEEEEecCC---eeeEEe--eccc---ccccEEEEccCCcEEEEEeCCCCeEEEE
Q 018248 135 NPTGLCDVSQNAGPMVMACPGLLKGQVRVEDYGT---KKSKYI--TAHA---SRIASIAMTLDGRFVATASSKGTLIRVF 206 (359)
Q Consensus 135 ~~~~~~~~~~~~~~~~l~~~g~~d~~v~~~~~~~---~~~~~~--~~~~---~~i~~~~~s~~~~~l~~~~~dg~~i~iw 206 (359)
. -..+..+++. +..+ ||+-.+.-++. .....+ .... ..++.+.| -||...|-.=.+.. |...
T Consensus 132 e---GWgLt~d~~~--Lims---dGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~-VdG~lyANVw~t~~-I~rI 201 (262)
T COG3823 132 E---GWGLTSDDKN--LIMS---DGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEW-VDGELYANVWQTTR-IARI 201 (262)
T ss_pred c---ceeeecCCcc--eEee---CCceEEEecCHHHhhhcceEEEEECCeecccccceee-eccEEEEeeeeecc-eEEE
Confidence 2 2345566665 3331 44444411111 111111 1111 12233333 25555554444444 5555
Q ss_pred EcCCCcEEEEeec----------CCCCcceEEEEecCCC-CEEEEE
Q 018248 207 NTMDGSLLQEMRR----------GAERAEIYSLAFSSNA-QWLAAS 241 (359)
Q Consensus 207 d~~~~~~~~~~~~----------~~~~~~i~~~~~s~~~-~~l~~~ 241 (359)
|..+|+.+..+.. ..+..-.+.+++.|++ +++++|
T Consensus 202 ~p~sGrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG 247 (262)
T COG3823 202 DPDSGRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG 247 (262)
T ss_pred cCCCCcEEEEEEccCCchhcCccccccccccceeecCcCCeEEEec
Confidence 6666665554432 1133456789999887 455554
No 421
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=93.98 E-value=3.8 Score=35.58 Aligned_cols=181 Identities=15% Similarity=0.142 Sum_probs=78.7
Q ss_pred CCCeEEEEECCCc----cEEeeecc----C----cceeEEEEecceeEEE---------ecCeEEEEEcccceeeeeEec
Q 018248 74 QSNKVMIWDDHEN----RYLGELSF----R----SEVKNVRLRRDRIVVV---------LNQKVYVYNFTDLKLVDQIET 132 (359)
Q Consensus 74 ~d~~i~iwd~~~~----~~~~~~~~----~----~~v~~~~~~~~~~~~~---------~d~~i~i~d~~~~~~~~~~~~ 132 (359)
..+.|.|.|+.+. +..+.++. . .....+..-|+|.+++ .-|.+.++|-++.+.....+.
T Consensus 96 ~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~tf~v~g~We~ 175 (461)
T PF05694_consen 96 RSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGETFEVKGRWEK 175 (461)
T ss_dssp TT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TTT--EEEE--S
T ss_pred ccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCccccccceecc
Confidence 4589999998743 33333331 1 2233455567885555 235788888777777666654
Q ss_pred cCCC---ceeeeeecCCCccEEEec-------------------CCCCeeEEEEecCCee-eEEeeccc--ccccEEEEc
Q 018248 133 VVNP---TGLCDVSQNAGPMVMACP-------------------GLLKGQVRVEDYGTKK-SKYITAHA--SRIASIAMT 187 (359)
Q Consensus 133 ~~~~---~~~~~~~~~~~~~~l~~~-------------------g~~d~~v~~~~~~~~~-~~~~~~~~--~~i~~~~~s 187 (359)
.... -....+.|..+ +++++ +....++.+|+...+. ++++.-.. .-...+.|.
T Consensus 176 ~~~~~~~gYDfw~qpr~n--vMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRfl 253 (461)
T PF05694_consen 176 DRGPQPFGYDFWYQPRHN--VMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFL 253 (461)
T ss_dssp B-TT------EEEETTTT--EEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-
T ss_pred CCCCCCCCCCeEEcCCCC--EEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCCCceEEEEec
Confidence 3221 12233444332 34432 1224688899988744 44444322 234567775
Q ss_pred c--CCcEEEEEe-CCCCeEEEEEc-CCCc----EEEEeecCC---------------CCcceEEEEecCCCCEEEEEc-C
Q 018248 188 L--DGRFVATAS-SKGTLIRVFNT-MDGS----LLQEMRRGA---------------ERAEIYSLAFSSNAQWLAASS-D 243 (359)
Q Consensus 188 ~--~~~~l~~~~-~dg~~i~iwd~-~~~~----~~~~~~~~~---------------~~~~i~~~~~s~~~~~l~~~~-~ 243 (359)
. +..+-++++ -... |..|-- ..++ .+.++.... -+.-|+.+.+|.|.++|...+ .
T Consensus 254 H~P~~~~gFvg~aLss~-i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~ 332 (461)
T PF05694_consen 254 HDPDANYGFVGCALSSS-IWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWL 332 (461)
T ss_dssp SSTT--EEEEEEE--EE-EEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS-EEEEEETT
T ss_pred CCCCccceEEEEeccce-EEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCCCEEEEEccc
Confidence 4 444433333 3334 554433 3443 222222110 034589999999999987665 6
Q ss_pred CCcEEEEEccCCCC
Q 018248 244 KGTVHVFGLKVDSG 257 (359)
Q Consensus 244 dg~i~iw~~~~~~~ 257 (359)
.|.|+.||+.....
T Consensus 333 ~GdvrqYDISDP~~ 346 (461)
T PF05694_consen 333 HGDVRQYDISDPFN 346 (461)
T ss_dssp TTEEEEEE-SSTTS
T ss_pred CCcEEEEecCCCCC
Confidence 89999999998763
No 422
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.83 E-value=3.8 Score=37.93 Aligned_cols=172 Identities=13% Similarity=0.239 Sum_probs=92.7
Q ss_pred CeEEEEECCCccEEeeec-cCcceeEEEEecceeEEE--ecCeEEEEEcccceeeeeE----eccCCCceeeeeecCCCc
Q 018248 76 NKVMIWDDHENRYLGELS-FRSEVKNVRLRRDRIVVV--LNQKVYVYNFTDLKLVDQI----ETVVNPTGLCDVSQNAGP 148 (359)
Q Consensus 76 ~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~--~d~~i~i~d~~~~~~~~~~----~~~~~~~~~~~~~~~~~~ 148 (359)
..|+|++ .+|+.+..+. ...++-.+.|+.+..+++ .+|++++|++. |..+... +.....+.-+.+.. ++
T Consensus 64 ~~I~If~-~sG~lL~~~~w~~~~lI~mgWs~~eeLI~v~k~g~v~Vy~~~-ge~ie~~svg~e~~~~~I~ec~~f~--~G 139 (829)
T KOG2280|consen 64 PYIRIFN-ISGQLLGRILWKHGELIGMGWSDDEELICVQKDGTVHVYGLL-GEFIESNSVGFESQMSDIVECRFFH--NG 139 (829)
T ss_pred eeEEEEe-ccccchHHHHhcCCCeeeecccCCceEEEEeccceEEEeecc-hhhhcccccccccccCceeEEEEec--Cc
Confidence 6689998 5777777766 445888999999998888 99999999983 3222221 11122233233333 34
Q ss_pred cEEEecCCCCeeEEE-EecCCeeeEEeec---ccccccEEEEccCCc---EEEEEe-CCCCeEEEEEcCCCc-EEEEeec
Q 018248 149 MVMACPGLLKGQVRV-EDYGTKKSKYITA---HASRIASIAMTLDGR---FVATAS-SKGTLIRVFNTMDGS-LLQEMRR 219 (359)
Q Consensus 149 ~~l~~~g~~d~~v~~-~~~~~~~~~~~~~---~~~~i~~~~~s~~~~---~l~~~~-~dg~~i~iwd~~~~~-~~~~~~~ 219 (359)
+.+.+ .+|.+.+ .......+..++. ...+-.|-...+++. .++-.. ..+ ..++...... ....+..
T Consensus 140 Vavlt---~~g~v~~i~~~~~~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~--~~~~q~~~~~~q~~~~~~ 214 (829)
T KOG2280|consen 140 VAVLT---VSGQVILINGVEEPKLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVG--LHICQVEESRVQLHALSW 214 (829)
T ss_pred eEEEe---cCCcEEEEcCCCcchhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhh--hcccceecccccccccCC
Confidence 44444 3555555 3333323333322 111112222222221 111111 111 1122111111 1112221
Q ss_pred CCCCcceEEEEecCCCCEEEEEcCCCcEEEEEccCCCCC
Q 018248 220 GAERAEIYSLAFSSNAQWLAASSDKGTVHVFGLKVDSGS 258 (359)
Q Consensus 220 ~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~ 258 (359)
..+.+..+..||+.++|+.=..+|.|.+-..+..+..
T Consensus 215 --~~~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~l 251 (829)
T KOG2280|consen 215 --PNSSVVKISVSPNRRFLALYTETGKIWVVSIDLSQIL 251 (829)
T ss_pred --CCceEEEEEEcCCcceEEEEecCCcEEEEecchhhhh
Confidence 2357889999999999999999999888887766543
No 423
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=93.18 E-value=0.014 Score=49.92 Aligned_cols=135 Identities=15% Similarity=0.221 Sum_probs=87.2
Q ss_pred EEEeccCCEEEEEecCCCCCCeEEEEECCCccEEeeeccCcceeEEEEecceeEEE----ecCeEEEEEcccceeeeeEe
Q 018248 56 VSMLFRSNIICLVNSGPHQSNKVMIWDDHENRYLGELSFRSEVKNVRLRRDRIVVV----LNQKVYVYNFTDLKLVDQIE 131 (359)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~----~d~~i~i~d~~~~~~~~~~~ 131 (359)
..|.+.+..++.++ .+..+..|| +.++.+.....++...+++|..++..++ ..+.+.+||+.+.. ..+++
T Consensus 40 ~~w~~e~~nlavac----a~tiv~~YD-~agq~~le~n~tg~aldm~wDkegdvlavlAek~~piylwd~n~ey-tqqLE 113 (615)
T KOG2247|consen 40 HRWRPEGHNLAVAC----ANTIVIYYD-KAGQVILELNPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEY-TQQLE 113 (615)
T ss_pred eeEecCCCceehhh----hhhHHHhhh-hhcceecccCCchhHhhhhhccccchhhhhhhcCCCeeechhhhhh-HHHHh
Confidence 34455555555555 568888999 7777777777788888899988876555 88999999995432 22222
Q ss_pred -ccCCCceeeeeecCCCccEEEecCCCCeeEEEEecCCeeeEEeec-ccccccEEEEccCCcEEEEEeCCC
Q 018248 132 -TVVNPTGLCDVSQNAGPMVMACPGLLKGQVRVEDYGTKKSKYITA-HASRIASIAMTLDGRFVATASSKG 200 (359)
Q Consensus 132 -~~~~~~~~~~~~~~~~~~~l~~~g~~d~~v~~~~~~~~~~~~~~~-~~~~i~~~~~s~~~~~l~~~~~dg 200 (359)
+....-....|++.... ++. |...|.+.++...........+ |...+.++++.+.+..+ .++.|.
T Consensus 114 ~gg~~s~sll~wsKg~~e--l~i-g~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd~vi-l~dcd~ 180 (615)
T KOG2247|consen 114 SGGTSSKSLLAWSKGTPE--LVI-GNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLEDYVI-LCDCDN 180 (615)
T ss_pred ccCcchHHHHhhccCCcc--ccc-cccccceEEEeccchhhhhhhcccccceeEEEecccceee-ecCcHH
Confidence 22222344667776655 443 5577888886655433333334 88899999999877544 444443
No 424
>PHA02713 hypothetical protein; Provisional
Probab=93.10 E-value=7.1 Score=35.97 Aligned_cols=64 Identities=8% Similarity=0.077 Sum_probs=39.0
Q ss_pred cCCcEEEEEeCC------CCeEEEEEcCC-CcE--EEEeecCCCCcceEEEEecCCCCEEEEEcCCC--cEEEEEccCCC
Q 018248 188 LDGRFVATASSK------GTLIRVFNTMD-GSL--LQEMRRGAERAEIYSLAFSSNAQWLAASSDKG--TVHVFGLKVDS 256 (359)
Q Consensus 188 ~~~~~l~~~~~d------g~~i~iwd~~~-~~~--~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg--~i~iw~~~~~~ 256 (359)
-+++..+.|+.+ .. +..||..+ .+- +..+.. .......+.+ ++++.++|+.++ .+..||..+.+
T Consensus 462 ~~~~IYv~GG~~~~~~~~~~-ve~Ydp~~~~~W~~~~~m~~--~r~~~~~~~~--~~~iyv~Gg~~~~~~~e~yd~~~~~ 536 (557)
T PHA02713 462 HKDDIYVVCDIKDEKNVKTC-IFRYNTNTYNGWELITTTES--RLSALHTILH--DNTIMMLHCYESYMLQDTFNVYTYE 536 (557)
T ss_pred ECCEEEEEeCCCCCCcccee-EEEecCCCCCCeeEccccCc--ccccceeEEE--CCEEEEEeeecceeehhhcCccccc
Confidence 356766777654 23 67899876 443 233322 1122223333 788889999888 67788887766
No 425
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=93.08 E-value=5.4 Score=34.50 Aligned_cols=62 Identities=19% Similarity=0.263 Sum_probs=37.7
Q ss_pred ccccEEEEccCCcEEEEEeCC-------------------CCeEEEEEcCCCcEEEEeecCCCCcceEEEEecCCCCEEE
Q 018248 179 SRIASIAMTLDGRFVATASSK-------------------GTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSNAQWLA 239 (359)
Q Consensus 179 ~~i~~~~~s~~~~~l~~~~~d-------------------g~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~ 239 (359)
.....++|.|||.+.++-+.. |. |.-++..+++ +..+..+ . .....++|+|+|++++
T Consensus 124 ~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~-i~r~~pdg~~-~e~~a~G-~-rnp~Gl~~d~~G~l~~ 199 (367)
T TIGR02604 124 HSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGG-LFRYNPDGGK-LRVVAHG-F-QNPYGHSVDSWGDVFF 199 (367)
T ss_pred ccccCceECCCCCEEEecccCCCceeccCCCccCcccccCce-EEEEecCCCe-EEEEecC-c-CCCccceECCCCCEEE
Confidence 447789999999866544421 33 5555544433 3333322 2 3457899999999887
Q ss_pred EEcCC
Q 018248 240 ASSDK 244 (359)
Q Consensus 240 ~~~~d 244 (359)
+-..+
T Consensus 200 tdn~~ 204 (367)
T TIGR02604 200 CDNDD 204 (367)
T ss_pred EccCC
Confidence 64433
No 426
>COG4880 Secreted protein containing C-terminal beta-propeller domain distantly related to WD-40 repeats [General function prediction only]
Probab=93.02 E-value=4.5 Score=34.81 Aligned_cols=86 Identities=17% Similarity=0.260 Sum_probs=59.4
Q ss_pred CeEEEEECCCccEEeeec---cCcceeEEEEecceeEEE---ecCeEEEEEcccceeeeeEeccCCCceeeeeecCCCcc
Q 018248 76 NKVMIWDDHENRYLGELS---FRSEVKNVRLRRDRIVVV---LNQKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAGPM 149 (359)
Q Consensus 76 ~~i~iwd~~~~~~~~~~~---~~~~v~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (359)
+.+.+.| +....+..++ ....|.+++|..|-.+++ .-.-+.+.|+.+.+..+.+..-.-+-.+--++|-+++.
T Consensus 406 N~vYilD-e~lnvvGkltGl~~gERIYAvRf~gdv~yiVTfrqtDPlfviDlsNPenPkvlGeLKIPGfS~YLHpigen~ 484 (603)
T COG4880 406 NAVYILD-ENLNVVGKLTGLAPGERIYAVRFVGDVLYIVTFRQTDPLFVIDLSNPENPKVLGELKIPGFSEYLHPIGENR 484 (603)
T ss_pred ceeEEEc-CCCcEEEEEeccCCCceEEEEEEeCceEEEEEEeccCceEEEEcCCCCCCceeEEEecCCchhhccccCCCc
Confidence 4566776 5556666665 567899999999888887 56678888986654433332222222445678888888
Q ss_pred EEEecCCCCeeEEE
Q 018248 150 VMACPGLLKGQVRV 163 (359)
Q Consensus 150 ~l~~~g~~d~~v~~ 163 (359)
++.. |..+|.+++
T Consensus 485 ~lGv-G~~~g~vKi 497 (603)
T COG4880 485 LLGV-GAYQGGVKI 497 (603)
T ss_pred EEEe-ecccCCceE
Confidence 8887 778898888
No 427
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=92.75 E-value=5.6 Score=33.82 Aligned_cols=52 Identities=27% Similarity=0.466 Sum_probs=34.4
Q ss_pred cccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcE---EEEee--cCCCCcceEEEEecCC
Q 018248 180 RIASIAMTLDGRFVATASSKGTLIRVFNTMDGSL---LQEMR--RGAERAEIYSLAFSSN 234 (359)
Q Consensus 180 ~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~---~~~~~--~~~~~~~i~~~~~s~~ 234 (359)
..+.|+|.|||+++++ ...|. |++++ .++.. +..+. ..........++++|+
T Consensus 3 ~P~~~a~~pdG~l~v~-e~~G~-i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~ 59 (331)
T PF07995_consen 3 NPRSMAFLPDGRLLVA-ERSGR-IWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPD 59 (331)
T ss_dssp SEEEEEEETTSCEEEE-ETTTE-EEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TT
T ss_pred CceEEEEeCCCcEEEE-eCCce-EEEEe-CCCcCcceecccccccccccCCcccceeccc
Confidence 3578999999987765 56888 99998 45543 22221 1113457899999995
No 428
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=92.74 E-value=6.4 Score=34.48 Aligned_cols=139 Identities=14% Similarity=0.076 Sum_probs=79.8
Q ss_pred EEEEEecCCCCCCeEEEEECCCcc-----EEeeeccCcceeEEEEec-----ceeEEE--ecCeEEEEEccc--ce----
Q 018248 64 IICLVNSGPHQSNKVMIWDDHENR-----YLGELSFRSEVKNVRLRR-----DRIVVV--LNQKVYVYNFTD--LK---- 125 (359)
Q Consensus 64 ~~~~~~~~~~~d~~i~iwd~~~~~-----~~~~~~~~~~v~~~~~~~-----~~~~~~--~d~~i~i~d~~~--~~---- 125 (359)
.+++.+ ..|.++||+...+. .+.+.+.+.+|..+..-+ +...++ .-..+.+|.+.. +.
T Consensus 39 ~IivGS----~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaVLhP~kl~vY~v~~~~g~~~~g 114 (418)
T PF14727_consen 39 KIIVGS----YSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAVLHPRKLSVYSVSLVDGTVEHG 114 (418)
T ss_pred EEEEec----cccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEEecCCEEEEEEEEecCCCcccC
Confidence 444444 67999999976543 444555778888887532 333444 788899998821 11
Q ss_pred ---eeeeEeccCC--CceeeeeecCCC---ccEEEecCCCCeeEEEEecCCeeeEEeecccccccEEEEccCCcEEEEEe
Q 018248 126 ---LVDQIETVVN--PTGLCDVSQNAG---PMVMACPGLLKGQVRVEDYGTKKSKYITAHASRIASIAMTLDGRFVATAS 197 (359)
Q Consensus 126 ---~~~~~~~~~~--~~~~~~~~~~~~---~~~l~~~g~~d~~v~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~ 197 (359)
.+..+..|.- ....++.-|-+. .-.++. -+.||.+.+++.+.-....+-...--...+.|.+.-..+++++
T Consensus 115 ~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcV-QS~DG~L~~feqe~~~f~~~lp~~llPgPl~Y~~~tDsfvt~s 193 (418)
T PF14727_consen 115 NQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICV-QSMDGSLSFFEQESFAFSRFLPDFLLPGPLCYCPRTDSFVTAS 193 (418)
T ss_pred cEEEEEEEEEEecccceeEEEEEECCCCCCceEEEE-EecCceEEEEeCCcEEEEEEcCCCCCCcCeEEeecCCEEEEec
Confidence 1122222211 112233333222 123333 5679999998877655444433333445667777777777777
Q ss_pred CCCCeEEEEEc
Q 018248 198 SKGTLIRVFNT 208 (359)
Q Consensus 198 ~dg~~i~iwd~ 208 (359)
.+.. +..|..
T Consensus 194 ss~~-l~~Yky 203 (418)
T PF14727_consen 194 SSWT-LECYKY 203 (418)
T ss_pred Ccee-EEEecH
Confidence 7766 776654
No 429
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=92.47 E-value=0.79 Score=44.13 Aligned_cols=140 Identities=11% Similarity=0.071 Sum_probs=81.2
Q ss_pred cceeEEEEecceeEEE-----ecCeEEEEEcccceeee-----eEec------cCCCceeeeeecCCCccEEEecCCCCe
Q 018248 96 SEVKNVRLRRDRIVVV-----LNQKVYVYNFTDLKLVD-----QIET------VVNPTGLCDVSQNAGPMVMACPGLLKG 159 (359)
Q Consensus 96 ~~v~~~~~~~~~~~~~-----~d~~i~i~d~~~~~~~~-----~~~~------~~~~~~~~~~~~~~~~~~l~~~g~~d~ 159 (359)
-.+..+...+|+...+ .+..|..||++.-..-. .+.. ......++.|.|.-....++ ...|+
T Consensus 101 ~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av--~l~dl 178 (1405)
T KOG3630|consen 101 IPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAV--DLSDL 178 (1405)
T ss_pred ccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhh--hcccc
Confidence 3455555666654433 44478889985432111 1111 11222345666654433333 34677
Q ss_pred eEEEEecCC--eeeEEeecccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcEEEEeecCC--CCcceEEEEecCCC
Q 018248 160 QVRVEDYGT--KKSKYITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRRGA--ERAEIYSLAFSSNA 235 (359)
Q Consensus 160 ~v~~~~~~~--~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~~~~~~~~~--~~~~i~~~~~s~~~ 235 (359)
.|++..... ..+..+ .-....++++|+|.|+.++.|-..|+ +.-|. ..++....+.... ....|.+++|-...
T Consensus 179 sl~V~~~~~~~~~v~s~-p~t~~~Tav~WSprGKQl~iG~nnGt-~vQy~-P~leik~~ip~Pp~~e~yrvl~v~Wl~t~ 255 (1405)
T KOG3630|consen 179 SLRVKSTKQLAQNVTSF-PVTNSQTAVLWSPRGKQLFIGRNNGT-EVQYE-PSLEIKSEIPEPPVEENYRVLSVTWLSTQ 255 (1405)
T ss_pred chhhhhhhhhhhhhccc-CcccceeeEEeccccceeeEecCCCe-EEEee-cccceeecccCCCcCCCcceeEEEEecce
Confidence 887744332 222222 23556899999999999999999999 88776 3555444443311 23579999998766
Q ss_pred CEEEE
Q 018248 236 QWLAA 240 (359)
Q Consensus 236 ~~l~~ 240 (359)
.++++
T Consensus 256 eflvv 260 (1405)
T KOG3630|consen 256 EFLVV 260 (1405)
T ss_pred eEEEE
Confidence 66654
No 430
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.46 E-value=5.1 Score=32.71 Aligned_cols=160 Identities=6% Similarity=0.046 Sum_probs=95.9
Q ss_pred CCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEECCCccEEeeec--cCcceeEEEEecceeEEE---ecCeEEEEEcc
Q 018248 48 NPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDDHENRYLGELS--FRSEVKNVRLRRDRIVVV---LNQKVYVYNFT 122 (359)
Q Consensus 48 ~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~---~d~~i~i~d~~ 122 (359)
|-...++.+.++++.+.++.+.. ...-.++=..+|+.++++. .-.....+.+..++++++ .++.+.++.+.
T Consensus 83 g~~~nvS~LTynp~~rtLFav~n----~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd 158 (316)
T COG3204 83 GETANVSSLTYNPDTRTLFAVTN----KPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVD 158 (316)
T ss_pred cccccccceeeCCCcceEEEecC----CCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEc
Confidence 44566899999999999888873 4555555558899999987 335566788888888888 67788887764
Q ss_pred cceeee-----eEe--c--c-CCCceeeeeecCCCccEEEecCCCCeeEEEEecCCee--e--EEeecc-------cccc
Q 018248 123 DLKLVD-----QIE--T--V-VNPTGLCDVSQNAGPMVMACPGLLKGQVRVEDYGTKK--S--KYITAH-------ASRI 181 (359)
Q Consensus 123 ~~~~~~-----~~~--~--~-~~~~~~~~~~~~~~~~~l~~~g~~d~~v~~~~~~~~~--~--~~~~~~-------~~~i 181 (359)
...... .+. . + .....-+++.|....++++= +..-+.|+..++.+ + .....+ -..+
T Consensus 159 ~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aK---Er~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~Dv 235 (316)
T COG3204 159 ADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAK---ERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDV 235 (316)
T ss_pred CCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEE---ccCCcEEEEEecCCcccccccccCcccccceEeecc
Confidence 332111 111 1 1 22344578888777655543 34445553333211 1 111111 2346
Q ss_pred cEEEEccC-CcEEEEEeCCCCeEEEEEcCCCcEEEE
Q 018248 182 ASIAMTLD-GRFVATASSKGTLIRVFNTMDGSLLQE 216 (359)
Q Consensus 182 ~~~~~s~~-~~~l~~~~~dg~~i~iwd~~~~~~~~~ 216 (359)
.++.|++. +.+|+-+.+++. +.-.|. .|+.+..
T Consensus 236 Sgl~~~~~~~~LLVLS~ESr~-l~Evd~-~G~~~~~ 269 (316)
T COG3204 236 SGLEFNAITNSLLVLSDESRR-LLEVDL-SGEVIEL 269 (316)
T ss_pred ccceecCCCCcEEEEecCCce-EEEEec-CCCeeee
Confidence 77888864 456666666666 777774 4554433
No 431
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=92.40 E-value=6.1 Score=35.09 Aligned_cols=93 Identities=15% Similarity=0.130 Sum_probs=53.3
Q ss_pred ceEEEEecCCCCEEEEEcCCCcEEEEEccCCCCCCCCCccccCCCCCccCCCCCceeeeeEeeeecceEEecccceeEEe
Q 018248 225 EIYSLAFSSNAQWLAASSDKGTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSAISSFRFIRGVLPKYFSSKWSMAQFR 304 (359)
Q Consensus 225 ~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (359)
.|..+..++.|..++.++.+| |.|..+...= .+++....+........-+.-.++|...
T Consensus 105 eV~~vl~s~~GS~VaL~G~~G-i~vMeLp~rw-------------G~~s~~eDgk~~v~CRt~~i~~~~ftss------- 163 (741)
T KOG4460|consen 105 EVYQVLLSPTGSHVALIGIKG-LMVMELPKRW-------------GKNSEFEDGKSTVNCRTTPVAERFFTSS------- 163 (741)
T ss_pred EEEEEEecCCCceEEEecCCe-eEEEEchhhc-------------CccceecCCCceEEEEeecccceeeccC-------
Confidence 567888999999999999999 4554442211 0000000010001111111122333322
Q ss_pred ecCCcEEEeeecccC---CEEEEEecCCeEEEEEeCCC
Q 018248 305 LPENVQYLVGFGRQN---NTIVIVGLDGSYYKCEFDPM 339 (359)
Q Consensus 305 ~~~~~v~~~~~s~~~---~~l~~~~~dg~i~v~~~~~~ 339 (359)
+.-.+..++|+|+. ..|..-+.|..+++|++...
T Consensus 164 -~~ltl~Qa~WHP~S~~D~hL~iL~sdnviRiy~lS~~ 200 (741)
T KOG4460|consen 164 -TSLTLKQAAWHPSSILDPHLVLLTSDNVIRIYSLSEP 200 (741)
T ss_pred -CceeeeeccccCCccCCceEEEEecCcEEEEEecCCc
Confidence 12245678999975 77899999999999998764
No 432
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=92.27 E-value=0.55 Score=25.03 Aligned_cols=28 Identities=18% Similarity=0.178 Sum_probs=20.3
Q ss_pred CCCceEEEEEccCCCEEEEec--C--CceEEE
Q 018248 5 DPITIHHLALNQDHGCFATGT--E--TGFRVY 32 (359)
Q Consensus 5 h~~~v~~~~~s~~g~~l~~~~--d--~~i~iw 32 (359)
....-...+|||||+.|+.++ + |...||
T Consensus 7 ~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 7 SPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred CCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 345677899999999998777 5 666665
No 433
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=92.20 E-value=9.5 Score=35.22 Aligned_cols=176 Identities=15% Similarity=0.161 Sum_probs=87.0
Q ss_pred CeEEEEECCCccEEeeec--cCcceeEEEEecceeEEE--ec------CeEEEEEcccceeeeeEeccCCCceeeeeecC
Q 018248 76 NKVMIWDDHENRYLGELS--FRSEVKNVRLRRDRIVVV--LN------QKVYVYNFTDLKLVDQIETVVNPTGLCDVSQN 145 (359)
Q Consensus 76 ~~i~iwd~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~--~d------~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (359)
..+..+|..+++....-. ....-.+++...+..+++ .+ .++..||..+.+-.. +..-...-.......-
T Consensus 301 ~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~-~a~M~~~R~~~~v~~l 379 (571)
T KOG4441|consen 301 RSVECYDPKTNEWSSLAPMPSPRCRVGVAVLNGKLYVVGGYDSGSDRLSSVERYDPRTNQWTP-VAPMNTKRSDFGVAVL 379 (571)
T ss_pred ceeEEecCCcCcEeecCCCCcccccccEEEECCEEEEEccccCCCcccceEEEecCCCCceec-cCCccCccccceeEEE
Confidence 678899988875544333 444455666666656666 44 467788876655222 1111111122233333
Q ss_pred CCccEEEecCCCCeeEE-----EEecCCeeeEEeecccccccEEE-EccCCcEEEEEeCCCCe-----EEEEEcCCCcEE
Q 018248 146 AGPMVMACPGLLKGQVR-----VEDYGTKKSKYITAHASRIASIA-MTLDGRFVATASSKGTL-----IRVFNTMDGSLL 214 (359)
Q Consensus 146 ~~~~~l~~~g~~d~~v~-----~~~~~~~~~~~~~~~~~~i~~~~-~s~~~~~l~~~~~dg~~-----i~iwd~~~~~~~ 214 (359)
+.. +.|+ |+.||.-. .|+.....-.............. ..-+|++.++|+.++.. +..||..+.+..
T Consensus 380 ~g~-iYav-GG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~ 457 (571)
T KOG4441|consen 380 DGK-LYAV-GGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWT 457 (571)
T ss_pred CCE-EEEE-eccccccccccEEEecCCCCcccccCCCCcceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCcee
Confidence 333 3444 44565433 34444333222221111112211 22377777888765531 678887776543
Q ss_pred EEeecCCCCcceEEEEecCCCCEEEEEcCCCc-----EEEEEccCCC
Q 018248 215 QEMRRGAERAEIYSLAFSSNAQWLAASSDKGT-----VHVFGLKVDS 256 (359)
Q Consensus 215 ~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~-----i~iw~~~~~~ 256 (359)
..-.-........ ++ .-++.+.+.|+.|+. |..||..+.+
T Consensus 458 ~~~~M~~~R~~~g-~a-~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~ 502 (571)
T KOG4441|consen 458 LIAPMNTRRSGFG-VA-VLNGKIYVVGGFDGTSALSSVERYDPETNQ 502 (571)
T ss_pred ecCCcccccccce-EE-EECCEEEEECCccCCCccceEEEEcCCCCc
Confidence 3222111111222 22 236778888887763 6667776654
No 434
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=92.16 E-value=1.1 Score=24.20 Aligned_cols=32 Identities=22% Similarity=0.357 Sum_probs=24.9
Q ss_pred cCCcEEEEEeC-CCCeEEEEEcCCCcEEEEeecC
Q 018248 188 LDGRFVATASS-KGTLIRVFNTMDGSLLQEMRRG 220 (359)
Q Consensus 188 ~~~~~l~~~~~-dg~~i~iwd~~~~~~~~~~~~~ 220 (359)
|++++|+++.. ++. |.++|..+++.+..+..+
T Consensus 1 pd~~~lyv~~~~~~~-v~~id~~~~~~~~~i~vg 33 (42)
T TIGR02276 1 PDGTKLYVTNSGSNT-VSVIDTATNKVIATIPVG 33 (42)
T ss_pred CCCCEEEEEeCCCCE-EEEEECCCCeEEEEEECC
Confidence 57787777664 566 999999999988888764
No 435
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=92.00 E-value=4.7 Score=31.30 Aligned_cols=48 Identities=17% Similarity=0.301 Sum_probs=35.6
Q ss_pred EEEEEeCCCCeEEEEEcC--CCcEEEEeecCCCCcceEEEEecCCCCEEEEEcC
Q 018248 192 FVATASSKGTLIRVFNTM--DGSLLQEMRRGAERAEIYSLAFSSNAQWLAASSD 243 (359)
Q Consensus 192 ~l~~~~~dg~~i~iwd~~--~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~ 243 (359)
.|..+..... |.+|++. ..+.+..|.. -+.|..+.++..|++|+|--.
T Consensus 30 ~Lfva~~g~~-Vev~~l~~~~~~~~~~F~T---v~~V~~l~y~~~GDYlvTlE~ 79 (215)
T PF14761_consen 30 ALFVAASGCK-VEVYDLEQEECPLLCTFST---VGRVLQLVYSEAGDYLVTLEE 79 (215)
T ss_pred eEEEEcCCCE-EEEEEcccCCCceeEEEcc---hhheeEEEeccccceEEEEEe
Confidence 4444455556 9999987 4456667763 478999999999999998643
No 436
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=91.88 E-value=8.1 Score=38.33 Aligned_cols=152 Identities=14% Similarity=0.258 Sum_probs=87.3
Q ss_pred eEEEEecc-eeE-EEecCeEEEEEcccceeeeeEeccCCCceeeee-ec-------CCCccEEEecCCCCeeEEEE----
Q 018248 99 KNVRLRRD-RIV-VVLNQKVYVYNFTDLKLVDQIETVVNPTGLCDV-SQ-------NAGPMVMACPGLLKGQVRVE---- 164 (359)
Q Consensus 99 ~~~~~~~~-~~~-~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~-~~-------~~~~~~l~~~g~~d~~v~~~---- 164 (359)
..+-+-|. ++. +..|+.+.+|+.+++.....+.+..+.+-.+.+ .| .=+..+++++ --.|.+.
T Consensus 82 ~~mGiFpeI~RaWiTiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT---~~ei~ilgV~~ 158 (1311)
T KOG1900|consen 82 TDMGIFPEIGRAWITIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVAT---PVEIVILGVSF 158 (1311)
T ss_pred eeeccchhhcceEEEeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecc---cceEEEEEEEe
Confidence 33444443 333 339999999999887777777665554443332 22 2223333321 2233331
Q ss_pred ecCCeee------EEeecccccccEEEEccCCcEEEEEeCCCCeEE--EEEcCCC---c-E----------------EEE
Q 018248 165 DYGTKKS------KYITAHASRIASIAMTLDGRFVATASSKGTLIR--VFNTMDG---S-L----------------LQE 216 (359)
Q Consensus 165 ~~~~~~~------~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~--iwd~~~~---~-~----------------~~~ 216 (359)
+...... ..+......|+++....+|+.+.+|-.+ . |+ +|...++ + + +..
T Consensus 159 ~~~~~~~~~f~~~~~i~~dg~~V~~I~~t~nGRIF~~G~dg-~-lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~ 236 (1311)
T KOG1900|consen 159 DEFTGELSIFNTSFKISVDGVSVNCITYTENGRIFFAGRDG-N-LYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLS 236 (1311)
T ss_pred ccccCcccccccceeeecCCceEEEEEeccCCcEEEeecCC-C-EEEEEEeccCchhhcccccccCchhHHHHhhhhhhc
Confidence 1111111 1222335578899988899877666544 5 54 2222221 1 0 111
Q ss_pred eecCCCCcceEEEEecCCCCEEEEEcCCCcEEEEEccCCC
Q 018248 217 MRRGAERAEIYSLAFSSNAQWLAASSDKGTVHVFGLKVDS 256 (359)
Q Consensus 217 ~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~ 256 (359)
+. +.+..+|..++.......|.+-+..|+|.+|++....
T Consensus 237 ~~-~~~~dpI~qi~ID~SR~IlY~lsek~~v~~Y~i~~~G 275 (1311)
T KOG1900|consen 237 VP-GSSKDPIRQITIDNSRNILYVLSEKGTVSAYDIGGNG 275 (1311)
T ss_pred CC-CCCCCcceeeEeccccceeeeeccCceEEEEEccCCC
Confidence 22 2356799999998888899999999999999998844
No 437
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=91.74 E-value=9.8 Score=34.41 Aligned_cols=146 Identities=12% Similarity=0.066 Sum_probs=81.1
Q ss_pred CceEEEEEccCCCEE-EEec---CCceEEEEcCCCcceeeeecccCCCCceeEEEEeccC----CEEEEEecCCCCCCeE
Q 018248 7 ITIHHLALNQDHGCF-ATGT---ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRS----NIICLVNSGPHQSNKV 78 (359)
Q Consensus 7 ~~v~~~~~s~~g~~l-~~~~---d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~----~~~~~~~~~~~~d~~i 78 (359)
.+|..++|. ||+.+ .+.- +|.+++= ....... -..|..++|.|-. ..++.+. ....|
T Consensus 20 HPvhGlaWT-DGkqVvLT~L~l~~gE~kfG-----ds~viGq-----FEhV~GlsW~P~~~~~~paLLAVQ----HkkhV 84 (671)
T PF15390_consen 20 HPVHGLAWT-DGKQVVLTDLQLHNGEPKFG-----DSKVIGQ-----FEHVHGLSWAPPCTADTPALLAVQ----HKKHV 84 (671)
T ss_pred ccccceEec-CCCEEEEEeeeeeCCccccC-----CccEeec-----cceeeeeeecCcccCCCCceEEEe----ccceE
Confidence 578888997 55544 3321 3333322 1222223 3567777887642 1233344 46899
Q ss_pred EEEECC-----CccEEee----eccCc--ceeEEEEecceeEEE--ecCeE-EEEEccc--ceeeeeEeccCCCceeeee
Q 018248 79 MIWDDH-----ENRYLGE----LSFRS--EVKNVRLRRDRIVVV--LNQKV-YVYNFTD--LKLVDQIETVVNPTGLCDV 142 (359)
Q Consensus 79 ~iwd~~-----~~~~~~~----~~~~~--~v~~~~~~~~~~~~~--~d~~i-~i~d~~~--~~~~~~~~~~~~~~~~~~~ 142 (359)
.+|.+. +++.+.. +...- -.....|+|...+++ ....+ .+++++. .+....+ ...+.+.+.+|
T Consensus 85 tVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi-~~~G~IhCACW 163 (671)
T PF15390_consen 85 TVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADI-KTSGLIHCACW 163 (671)
T ss_pred EEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEec-cCCceEEEEEe
Confidence 999865 2333322 21112 234678999887777 33333 3445432 2222233 34567889999
Q ss_pred ecCCCccEEEecCCCCeeEEEEecCCee
Q 018248 143 SQNAGPMVMACPGLLKGQVRVEDYGTKK 170 (359)
Q Consensus 143 ~~~~~~~~l~~~g~~d~~v~~~~~~~~~ 170 (359)
..||..+++|. |+ .=.-++|+...+.
T Consensus 164 T~DG~RLVVAv-GS-sLHSyiWd~~qKt 189 (671)
T PF15390_consen 164 TKDGQRLVVAV-GS-SLHSYIWDSAQKT 189 (671)
T ss_pred cCcCCEEEEEe-CC-eEEEEEecCchhh
Confidence 99999877776 54 3345567766543
No 438
>COG1770 PtrB Protease II [Amino acid transport and metabolism]
Probab=91.58 E-value=11 Score=34.67 Aligned_cols=239 Identities=10% Similarity=0.053 Sum_probs=119.8
Q ss_pred ceEEEEEccCCCEEEEecC--C----ceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCC-CCCeEEE
Q 018248 8 TIHHLALNQDHGCFATGTE--T----GFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPH-QSNKVMI 80 (359)
Q Consensus 8 ~v~~~~~s~~g~~l~~~~d--~----~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~-~d~~i~i 80 (359)
.+-.++.|||.+++|.+-| | ++++-|+.+++..... + .+.....+|..+++.+........ .-.+|..
T Consensus 130 ~Lg~~~~s~D~~~la~s~D~~G~e~y~lr~kdL~tg~~~~d~-i----~~~~~~~~Wa~d~~~lfYt~~d~~~rp~kv~~ 204 (682)
T COG1770 130 SLGAASISPDHNLLAYSVDVLGDEQYTLRFKDLATGEELPDE-I----TNTSGSFAWAADGKTLFYTRLDENHRPDKVWR 204 (682)
T ss_pred eeeeeeeCCCCceEEEEEecccccEEEEEEEecccccccchh-h----cccccceEEecCCCeEEEEEEcCCCCcceEEE
Confidence 4567888999999988763 2 3889999887655322 2 344667788888888877764321 1122333
Q ss_pred EECCC--ccEEeeec--cCcceeEEEEecceeEEE------ecCeEEEEEcccceeeeeE-eccCCCceeeeeecCCCcc
Q 018248 81 WDDHE--NRYLGELS--FRSEVKNVRLRRDRIVVV------LNQKVYVYNFTDLKLVDQI-ETVVNPTGLCDVSQNAGPM 149 (359)
Q Consensus 81 wd~~~--~~~~~~~~--~~~~v~~~~~~~~~~~~~------~d~~i~i~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 149 (359)
-.+.+ .+....+. ...--.++.-+....+++ ....+++.+.........+ ......+ -......++..
T Consensus 205 h~~gt~~~~d~lvyeE~d~~f~~~v~~s~s~~yi~i~~~~~~tsE~~ll~a~~p~~~p~vv~pr~~g~-eY~~eh~~d~f 283 (682)
T COG1770 205 HRLGTPGSSDELVYEEKDDRFFLSVGRSRSEAYIVISLGSHITSEVRLLDADDPEAEPKVVLPRENGV-EYSVEHGGDRF 283 (682)
T ss_pred EecCCCCCcceEEEEcCCCcEEEEeeeccCCceEEEEcCCCcceeEEEEecCCCCCceEEEEEcCCCc-EEeeeecCcEE
Confidence 33333 22222222 222223333344455554 4567888887554332222 1111111 12222334444
Q ss_pred EEEecCCCCe-eEEEEecCC----eeeEEeecccccccEEEEccCCcEEEEEeCCCC--eEEEEEcCCCcEEEEeecCCC
Q 018248 150 VMACPGLLKG-QVRVEDYGT----KKSKYITAHASRIASIAMTLDGRFVATASSKGT--LIRVFNTMDGSLLQEMRRGAE 222 (359)
Q Consensus 150 ~l~~~g~~d~-~v~~~~~~~----~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~--~i~iwd~~~~~~~~~~~~~~~ 222 (359)
++.+ . .+| ..+|..... ..-+.+..|...+.--.|+--..+|+....++. .|++++.++++... +... .
T Consensus 284 ~i~s-N-~~gknf~l~~ap~~~~~~~w~~~I~h~~~~~l~~~~~f~~~lVl~eR~~glp~v~v~~~~~~~~~~-i~f~-~ 359 (682)
T COG1770 284 YILS-N-ADGKNFKLVRAPVSADKSNWRELIPHREDVRLEGVDLFADHLVLLERQEGLPRVVVRDRKTGEERG-IAFD-D 359 (682)
T ss_pred EEEe-c-CCCcceEEEEccCCCChhcCeeeeccCCCceeeeeeeeccEEEEEecccCCceEEEEecCCCceee-EEec-c
Confidence 4443 2 233 334422221 333455667777776677766777776655432 17788887766543 3221 2
Q ss_pred CcceEEEEecCC--CCEE--EEEcC--CCcEEEEEccCCC
Q 018248 223 RAEIYSLAFSSN--AQWL--AASSD--KGTVHVFGLKVDS 256 (359)
Q Consensus 223 ~~~i~~~~~s~~--~~~l--~~~~~--dg~i~iw~~~~~~ 256 (359)
......+..+++ ...| -..+. =.++.=+|+.+++
T Consensus 360 ~ay~~~l~~~~e~~s~~lR~~ysS~ttP~~~~~~dm~t~e 399 (682)
T COG1770 360 EAYSAGLSGNPEFDSDRLRYSYSSMTTPATLFDYDMATGE 399 (682)
T ss_pred hhhhccccCCCCCCCccEEEEeecccccceeEEeeccCCc
Confidence 233444444432 2222 22222 2345556666665
No 439
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=91.57 E-value=9.3 Score=33.81 Aligned_cols=31 Identities=19% Similarity=0.370 Sum_probs=25.5
Q ss_pred cceEEEEecCCCCEEEEEcCCCcEEEEEccC
Q 018248 224 AEIYSLAFSSNAQWLAASSDKGTVHVFGLKV 254 (359)
Q Consensus 224 ~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~ 254 (359)
..|.+++..+..+.|++.+.+|.|.+|++..
T Consensus 190 ~~I~~v~~d~~r~~ly~l~~~~~Iq~w~l~~ 220 (422)
T PF08801_consen 190 PKIVQVAVDPSRRLLYTLTSDGSIQVWDLGP 220 (422)
T ss_dssp --EEEEEEETTTTEEEEEESSE-EEEEEE-S
T ss_pred hceeeEEecCCcCEEEEEeCCCcEEEEEEeC
Confidence 3499999999889999999999999999986
No 440
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=91.54 E-value=2.1 Score=32.30 Aligned_cols=30 Identities=23% Similarity=0.416 Sum_probs=24.7
Q ss_pred ccccEEEEccCC------cEEEEEeCCCCeEEEEEcC
Q 018248 179 SRIASIAMTLDG------RFVATASSKGTLIRVFNTM 209 (359)
Q Consensus 179 ~~i~~~~~s~~~------~~l~~~~~dg~~i~iwd~~ 209 (359)
..+..++|||.| -+||+.+.++. |.||...
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~-l~l~~~~ 121 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGR-LSLYGPP 121 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCe-EEEEecC
Confidence 378899999954 37888999999 9999854
No 441
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.51 E-value=2.1 Score=37.00 Aligned_cols=100 Identities=10% Similarity=0.069 Sum_probs=63.3
Q ss_pred CCCceEEEEEccCCCEEEEec-CCceEEEEcCCCcceeee--ecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEE
Q 018248 5 DPITIHHLALNQDHGCFATGT-ETGFRVYLSDPYKPIMRR--DFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIW 81 (359)
Q Consensus 5 h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~--~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iw 81 (359)
..++|.++.||+|.+.||+-. +.+|.+++..+.+..... +.+ ..+..+....|..+ .-++++. +..+.+|
T Consensus 65 d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck-~k~~~IlGF~W~~s-~e~A~i~-----~~G~e~y 137 (657)
T KOG2377|consen 65 DKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECK-TKNANILGFCWTSS-TEIAFIT-----DQGIEFY 137 (657)
T ss_pred CCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhc-cCcceeEEEEEecC-eeEEEEe-----cCCeEEE
Confidence 467999999999999999998 999999998644333211 111 11222334444433 4456665 3556666
Q ss_pred ECCC-ccEEeeec-cCcceeEEEEecceeEEE
Q 018248 82 DDHE-NRYLGELS-FRSEVKNVRLRRDRIVVV 111 (359)
Q Consensus 82 d~~~-~~~~~~~~-~~~~v~~~~~~~~~~~~~ 111 (359)
.... .+.++..+ +...|.-..|.++...+.
T Consensus 138 ~v~pekrslRlVks~~~nvnWy~yc~et~v~L 169 (657)
T KOG2377|consen 138 QVLPEKRSLRLVKSHNLNVNWYMYCPETAVIL 169 (657)
T ss_pred EEchhhhhhhhhhhcccCccEEEEccccceEe
Confidence 5433 23344444 777888888888876665
No 442
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=90.86 E-value=11 Score=33.43 Aligned_cols=57 Identities=16% Similarity=0.223 Sum_probs=38.0
Q ss_pred cccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcE--EEEee---cCCCCcceEEEEecCCC
Q 018248 178 ASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSL--LQEMR---RGAERAEIYSLAFSSNA 235 (359)
Q Consensus 178 ~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~--~~~~~---~~~~~~~i~~~~~s~~~ 235 (359)
-...+.|+|.|||++|++--..|. |++++..++.. +..+. .....+....|+++|+-
T Consensus 29 L~~Pw~maflPDG~llVtER~~G~-I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF 90 (454)
T TIGR03606 29 LNKPWALLWGPDNQLWVTERATGK-ILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDF 90 (454)
T ss_pred CCCceEEEEcCCCeEEEEEecCCE-EEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCc
Confidence 345689999999988776655688 99987655432 21121 11124678999999884
No 443
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=90.67 E-value=14 Score=34.19 Aligned_cols=230 Identities=14% Similarity=0.150 Sum_probs=106.0
Q ss_pred ccCCCEEEEec-CC------ceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCC-C--CCCeEEEEECC
Q 018248 15 NQDHGCFATGT-ET------GFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGP-H--QSNKVMIWDDH 84 (359)
Q Consensus 15 s~~g~~l~~~~-d~------~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~-~--~d~~i~iwd~~ 84 (359)
+..+.++++|+ ++ .+..||..+........+. +......++. -++.+.+++|.. . .-..+..||..
T Consensus 282 ~~~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~--~~r~~~~~~~--~~~~lYv~GG~~~~~~~l~~ve~YD~~ 357 (571)
T KOG4441|consen 282 SVSGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMP--SPRCRVGVAV--LNGKLYVVGGYDSGSDRLSSVERYDPR 357 (571)
T ss_pred CCCCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCC--cccccccEEE--ECCEEEEEccccCCCcccceEEEecCC
Confidence 34466778887 53 4778888766444334432 1111122222 244555555432 0 22568889988
Q ss_pred CccEEeeecc--CcceeEEEEecceeEEE--ec-----CeEEEEEcccceeeeeEeccCCCceeeeeecCCCccEEEecC
Q 018248 85 ENRYLGELSF--RSEVKNVRLRRDRIVVV--LN-----QKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAGPMVMACPG 155 (359)
Q Consensus 85 ~~~~~~~~~~--~~~v~~~~~~~~~~~~~--~d-----~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g 155 (359)
+++....-.- ...-.+++....-.+++ .| .++..||..+.+--.. ..........+...-+..++ ++ |
T Consensus 358 ~~~W~~~a~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~v-a~m~~~r~~~gv~~~~g~iY-i~-G 434 (571)
T KOG4441|consen 358 TNQWTPVAPMNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPV-APMLTRRSGHGVAVLGGKLY-II-G 434 (571)
T ss_pred CCceeccCCccCccccceeEEECCEEEEEeccccccccccEEEecCCCCccccc-CCCCcceeeeEEEEECCEEE-EE-c
Confidence 8775542221 11112222222223333 33 3577777654432111 11111222333333333333 33 3
Q ss_pred CCCee------EEEEecCCeeeEEe---ecccccccEEEEccCCcEEEEEeCCC-----CeEEEEEcCCCcEEEEeecCC
Q 018248 156 LLKGQ------VRVEDYGTKKSKYI---TAHASRIASIAMTLDGRFVATASSKG-----TLIRVFNTMDGSLLQEMRRGA 221 (359)
Q Consensus 156 ~~d~~------v~~~~~~~~~~~~~---~~~~~~i~~~~~s~~~~~l~~~~~dg-----~~i~iwd~~~~~~~~~~~~~~ 221 (359)
+.++. +..++.....-..+ ........ ++ .-++.+.+.|+.|+ + |..||..+.+....-.-..
T Consensus 435 G~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g-~a-~~~~~iYvvGG~~~~~~~~~-VE~ydp~~~~W~~v~~m~~ 511 (571)
T KOG4441|consen 435 GGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFG-VA-VLNGKIYVVGGFDGTSALSS-VERYDPETNQWTMVAPMTS 511 (571)
T ss_pred CcCCCccccceEEEEcCCCCceeecCCcccccccce-EE-EECCEEEEECCccCCCccce-EEEEcCCCCceeEcccCcc
Confidence 33332 33344443322221 11111111 22 23677778888765 3 6778887766543321111
Q ss_pred CCcceEEEEecCCCCEEEEEcCCC-----cEEEEEccCCC
Q 018248 222 ERAEIYSLAFSSNAQWLAASSDKG-----TVHVFGLKVDS 256 (359)
Q Consensus 222 ~~~~i~~~~~s~~~~~l~~~~~dg-----~i~iw~~~~~~ 256 (359)
....+....+ +++..+.|+.|| +|..||..+.+
T Consensus 512 ~rs~~g~~~~--~~~ly~vGG~~~~~~l~~ve~ydp~~d~ 549 (571)
T KOG4441|consen 512 PRSAVGVVVL--GGKLYAVGGFDGNNNLNTVECYDPETDT 549 (571)
T ss_pred ccccccEEEE--CCEEEEEecccCccccceeEEcCCCCCc
Confidence 2222222333 577778888776 46677666654
No 444
>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast). It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].
Probab=90.54 E-value=15 Score=34.22 Aligned_cols=157 Identities=8% Similarity=0.047 Sum_probs=0.0
Q ss_pred CCceEEEEEccCCCEEEEec-CCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCC------EEEEEec-CCCCCCe
Q 018248 6 PITIHHLALNQDHGCFATGT-ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSN------IICLVNS-GPHQSNK 77 (359)
Q Consensus 6 ~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~------~~~~~~~-~~~~d~~ 77 (359)
++.|..+.|.++++.+++.. +|.|.+|+.+.........+...+...+..-.+..+-. ++++++. .. ..-.
T Consensus 129 ~~kvv~Ik~~~~~~~I~vvl~nG~i~~~d~~~~~l~~~~~l~~~~~~~v~ys~fv~~~~~~~~~~~ll~v~~~~~-~k~~ 207 (670)
T PF10395_consen 129 DDKVVGIKFSSDGKIIYVVLENGSIQIYDFSENSLEKVPQLKLKSSINVSYSKFVNDFELENGKDLLLTVSQLSN-SKLS 207 (670)
T ss_pred ccceEEEEEecCCCEEEEEEcCCcEEEEeccccccccccccccccccceehhhhhcccccccCCceEEEEEEcCC-CcEE
Q ss_pred EEEEEC-CCccEEeeec----cCcceeEEEEecceeEEE--ecCeEEEEEcccceeeeeEecc---CCC-ceeeeeecCC
Q 018248 78 VMIWDD-HENRYLGELS----FRSEVKNVRLRRDRIVVV--LNQKVYVYNFTDLKLVDQIETV---VNP-TGLCDVSQNA 146 (359)
Q Consensus 78 i~iwd~-~~~~~~~~~~----~~~~v~~~~~~~~~~~~~--~d~~i~i~d~~~~~~~~~~~~~---~~~-~~~~~~~~~~ 146 (359)
.+++.+ .....+.++. +........|.-+...+. .+++|.+|++...+..+++... ... ...+.+.|-.
T Consensus 208 ykL~~l~~~~~~~~El~s~~~e~~~~~~s~f~Y~~G~LY~l~~~~i~~ysip~f~~~~tI~l~~ii~~~~~~~vSl~~~s 287 (670)
T PF10395_consen 208 YKLISLSNESSSIFELSSTILENFGLEDSKFCYQFGKLYQLSKKTISSYSIPNFQIQKTISLPSIIDKESDDLVSLKPPS 287 (670)
T ss_pred EEEEEeccCCcceEEeehheeccCCcccceEEEeCCEEEEEeCCEEEEEEcCCceEEEEEEechhhccccccceEeecCC
Q ss_pred CccEEEecCCCCeeEEEEec
Q 018248 147 GPMVMACPGLLKGQVRVEDY 166 (359)
Q Consensus 147 ~~~~l~~~g~~d~~v~~~~~ 166 (359)
...++.+ .++.|++.+.
T Consensus 288 ~nRvLLs---~~nkIyLld~ 304 (670)
T PF10395_consen 288 PNRVLLS---VNNKIYLLDL 304 (670)
T ss_pred CCeEEEE---cCCEEEEEee
No 445
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=90.42 E-value=5.7 Score=39.34 Aligned_cols=165 Identities=9% Similarity=0.130 Sum_probs=88.9
Q ss_pred CCeeEEEEecCC-eeeEEeecccccccEEEE--------ccCCcEEEEEeCCCCeEEEEEcC----CCcE---EEEeecC
Q 018248 157 LKGQVRVEDYGT-KKSKYITAHASRIASIAM--------TLDGRFVATASSKGTLIRVFNTM----DGSL---LQEMRRG 220 (359)
Q Consensus 157 ~d~~v~~~~~~~-~~~~~~~~~~~~i~~~~~--------s~~~~~l~~~~~dg~~i~iwd~~----~~~~---~~~~~~~ 220 (359)
.|+.+.+|+.+. .....+.+-...|..+.+ -|.=+++...+.--. |.++-+. ++.. ...+.-.
T Consensus 97 iDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~e-i~ilgV~~~~~~~~~~~f~~~~~i~ 175 (1311)
T KOG1900|consen 97 IDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVE-IVILGVSFDEFTGELSIFNTSFKIS 175 (1311)
T ss_pred eCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccce-EEEEEEEeccccCcccccccceeee
Confidence 388999998876 555556655556655543 233334433333333 5555432 1111 1112222
Q ss_pred CCCcceEEEEecCCCCEEEEEcCCCcEEEEEccCCCCCCCCCccccCCCCCccC-CCC--CceeeeeEeeeecceEEecc
Q 018248 221 AERAEIYSLAFSSNAQWLAASSDKGTVHVFGLKVDSGSPGTSKLHSASEPNLSS-KNS--SAISSFRFIRGVLPKYFSSK 297 (359)
Q Consensus 221 ~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~ 297 (359)
.....|.++....+|+.+.+| .|| .+|.+.-.... ++.+. ..+ ...+.+..+-.+++..+
T Consensus 176 ~dg~~V~~I~~t~nGRIF~~G-~dg--~lyEl~Yq~~~-----------gWf~~rc~Kiclt~s~ls~lvPs~~~~~--- 238 (1311)
T KOG1900|consen 176 VDGVSVNCITYTENGRIFFAG-RDG--NLYELVYQAED-----------GWFGSRCRKICLTKSVLSSLVPSLLSVP--- 238 (1311)
T ss_pred cCCceEEEEEeccCCcEEEee-cCC--CEEEEEEeccC-----------chhhcccccccCchhHHHHhhhhhhcCC---
Confidence 345689999988899888765 455 55655433211 00000 000 01111111111111111
Q ss_pred cceeEEeecCCcEEEeeecccCCEEEEEecCCeEEEEEeCCCCCCceE
Q 018248 298 WSMAQFRLPENVQYLVGFGRQNNTIVIVGLDGSYYKCEFDPMKGGEMH 345 (359)
Q Consensus 298 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~ 345 (359)
....++|..++....-+.|++-+..|+|.+|++.....+.++
T Consensus 239 ------~~~~dpI~qi~ID~SR~IlY~lsek~~v~~Y~i~~~G~~~~r 280 (1311)
T KOG1900|consen 239 ------GSSKDPIRQITIDNSRNILYVLSEKGTVSAYDIGGNGLGGPR 280 (1311)
T ss_pred ------CCCCCcceeeEeccccceeeeeccCceEEEEEccCCCcccee
Confidence 012468888999888889999999999999999875444443
No 446
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=89.77 E-value=5 Score=39.12 Aligned_cols=132 Identities=13% Similarity=0.003 Sum_probs=78.7
Q ss_pred EeccCCEEEEEecCCCCCCeEEEEECCCccEE--------eeec----cCcceeEEEEeccee--EEE--ecCeEEEEEc
Q 018248 58 MLFRSNIICLVNSGPHQSNKVMIWDDHENRYL--------GELS----FRSEVKNVRLRRDRI--VVV--LNQKVYVYNF 121 (359)
Q Consensus 58 ~~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~--------~~~~----~~~~v~~~~~~~~~~--~~~--~d~~i~i~d~ 121 (359)
..++....+++... .+-.|..||+++-..- ..-. ......++.|+|.-. .++ .|+.|++..+
T Consensus 108 ~~~D~t~s~v~~ts--ng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~V~~~ 185 (1405)
T KOG3630|consen 108 CFHDATDSVVVSTS--NGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLRVKST 185 (1405)
T ss_pred eccCCceEEEEEec--CCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchhhhhh
Confidence 33444444444432 3467889998653211 1111 223456778887532 222 8899988887
Q ss_pred ccce-eeeeEeccCCCceeeeeecCCCccEEEecCCCCeeEEEEecCCeeeEEeecc----cccccEEEEccCCcEEEE
Q 018248 122 TDLK-LVDQIETVVNPTGLCDVSQNAGPMVMACPGLLKGQVRVEDYGTKKSKYITAH----ASRIASIAMTLDGRFVAT 195 (359)
Q Consensus 122 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~v~~~~~~~~~~~~~~~~----~~~i~~~~~s~~~~~l~~ 195 (359)
.... ....+. ......+++|+|.++. ++. |...|++.-+.........+... ...|.+|+|-....++++
T Consensus 186 ~~~~~~v~s~p-~t~~~Tav~WSprGKQ--l~i-G~nnGt~vQy~P~leik~~ip~Pp~~e~yrvl~v~Wl~t~eflvv 260 (1405)
T KOG3630|consen 186 KQLAQNVTSFP-VTNSQTAVLWSPRGKQ--LFI-GRNNGTEVQYEPSLEIKSEIPEPPVEENYRVLSVTWLSTQEFLVV 260 (1405)
T ss_pred hhhhhhhcccC-cccceeeEEeccccce--eeE-ecCCCeEEEeecccceeecccCCCcCCCcceeEEEEecceeEEEE
Confidence 4322 222222 3345678899999887 554 77788888788777655554332 367899999776666654
No 447
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=89.46 E-value=1.8 Score=22.92 Aligned_cols=32 Identities=22% Similarity=0.432 Sum_probs=20.0
Q ss_pred eecccccccEEEEccCCcEEEEEeC-C--CCeEEEE
Q 018248 174 ITAHASRIASIAMTLDGRFVATASS-K--GTLIRVF 206 (359)
Q Consensus 174 ~~~~~~~i~~~~~s~~~~~l~~~~~-d--g~~i~iw 206 (359)
+...........|||||+.|+-++. + |. -.||
T Consensus 4 ~t~~~~~~~~p~~SpDGk~i~f~s~~~~~g~-~diy 38 (39)
T PF07676_consen 4 LTNSPGDDGSPAWSPDGKYIYFTSNRNDRGS-FDIY 38 (39)
T ss_dssp ES-SSSSEEEEEE-TTSSEEEEEEECT--SS-EEEE
T ss_pred cccCCccccCEEEecCCCEEEEEecCCCCCC-cCEE
Confidence 3344556678899999998776654 3 55 5555
No 448
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=89.29 E-value=3.2 Score=35.97 Aligned_cols=163 Identities=9% Similarity=0.142 Sum_probs=89.2
Q ss_pred eeeeEeccCCCceeeeeecCCCccEEEecCCCCeeEEEEecCCeeeEE--e-ecccc----ccc-EEEEccCCcEEEEEe
Q 018248 126 LVDQIETVVNPTGLCDVSQNAGPMVMACPGLLKGQVRVEDYGTKKSKY--I-TAHAS----RIA-SIAMTLDGRFVATAS 197 (359)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~v~~~~~~~~~~~~--~-~~~~~----~i~-~~~~s~~~~~l~~~~ 197 (359)
.+..+.....++..+-+.|+++..++.+ | ..+.++....+.... + ....+ .|+ .+..-..|..|.+++
T Consensus 212 ~i~~L~~~~~~v~qllL~Pdg~~LYv~~-g---~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~ 287 (733)
T COG4590 212 IIRLLSVPFSDVSQLLLTPDGKTLYVRT-G---SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVH 287 (733)
T ss_pred hhhhcCCCccchHhhEECCCCCEEEEec-C---CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEc
Confidence 3344555556677788899999877776 4 355554444333221 1 11111 122 222234566788899
Q ss_pred CCCCeEEEE-EcCCCc-----EEEEeecCCCCcceEEEEecCCCCEEEEEcCCCcEEEEEccCCCCCCCCCccccCCCCC
Q 018248 198 SKGTLIRVF-NTMDGS-----LLQEMRRGAERAEIYSLAFSSNAQWLAASSDKGTVHVFGLKVDSGSPGTSKLHSASEPN 271 (359)
Q Consensus 198 ~dg~~i~iw-d~~~~~-----~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~ 271 (359)
.||. |.-| |.+.+. .++.++. .+.++.-+.-..+.+-+++-...|++.++.-...+..
T Consensus 288 ~dG~-vsQWFdvr~~~~p~l~h~R~f~l--~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~l------------- 351 (733)
T COG4590 288 EDGL-VSQWFDVRRDGQPHLNHIRNFKL--APAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLL------------- 351 (733)
T ss_pred CCCc-eeeeeeeecCCCCcceeeecccc--CcccceeeccccccceEEEEcCCCceeeeecccCcce-------------
Confidence 9998 8766 554332 1222221 2233333333333445666677777777665544321
Q ss_pred ccCCCCCceeeeeEeeeecceEEecccceeEEeecCCcEEEeeecccCCEEEEEecCCeEEEEEeCCC
Q 018248 272 LSSKNSSAISSFRFIRGVLPKYFSSKWSMAQFRLPENVQYLVGFGRQNNTIVIVGLDGSYYKCEFDPM 339 (359)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~~ 339 (359)
.++.. -..+..+++||.+.+|++ -..|.++++.++..
T Consensus 352 ---------------------L~~~~---------~~~~~~~~~Sp~~~~Ll~-e~~gki~~~~l~Nr 388 (733)
T COG4590 352 ---------------------LFERA---------YQAPQLVAMSPNQAYLLS-EDQGKIRLAQLENR 388 (733)
T ss_pred ---------------------ehhhh---------hcCcceeeeCcccchhee-ecCCceEEEEecCC
Confidence 00000 012346899999998885 45678999998764
No 449
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=89.25 E-value=7 Score=34.17 Aligned_cols=35 Identities=6% Similarity=-0.219 Sum_probs=28.3
Q ss_pred CCCceEEEEEccCCCEEEEec-CCceEEEEcCCCcc
Q 018248 5 DPITIHHLALNQDHGCFATGT-ETGFRVYLSDPYKP 39 (359)
Q Consensus 5 h~~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~ 39 (359)
.+..+.+++.+|++++.|+.. =|.|.++|+..+..
T Consensus 306 ~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~v 341 (415)
T PF14655_consen 306 SKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIV 341 (415)
T ss_pred CCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChh
Confidence 346689999999999888876 68899999986543
No 450
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=89.21 E-value=12 Score=31.14 Aligned_cols=151 Identities=13% Similarity=0.211 Sum_probs=87.4
Q ss_pred CeEEEEECCCccEEeeecc-------CcceeEEEEecce-----e--EEE--ecCeEEEEEcccceeeeeEeccCCCcee
Q 018248 76 NKVMIWDDHENRYLGELSF-------RSEVKNVRLRRDR-----I--VVV--LNQKVYVYNFTDLKLVDQIETVVNPTGL 139 (359)
Q Consensus 76 ~~i~iwd~~~~~~~~~~~~-------~~~v~~~~~~~~~-----~--~~~--~d~~i~i~d~~~~~~~~~~~~~~~~~~~ 139 (359)
-+|.+||+.+++.++++.. .+.+..+.+.... . ++. ..+.|.++|+.+++.-+.+..
T Consensus 34 pKLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~------- 106 (287)
T PF03022_consen 34 PKLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHN------- 106 (287)
T ss_dssp -EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETC-------
T ss_pred cEEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecC-------
Confidence 5888899999998888762 2456677776521 2 222 556899999988877555532
Q ss_pred eeeecCCCccEEEecCCCCeeEEEEecCCeeeEEeecccccccEEEEcc---CCcEEEEEeCCCCeEEEEEcCCC-----
Q 018248 140 CDVSQNAGPMVMACPGLLKGQVRVEDYGTKKSKYITAHASRIASIAMTL---DGRFVATASSKGTLIRVFNTMDG----- 211 (359)
Q Consensus 140 ~~~~~~~~~~~l~~~g~~d~~v~~~~~~~~~~~~~~~~~~~i~~~~~s~---~~~~l~~~~~dg~~i~iwd~~~~----- 211 (359)
.+.+++....+.. +|.. + . ....+..++.+| +++.|.-..-.+. ++|.+++.
T Consensus 107 -~~~~~p~~~~~~i----~g~~-~--------~----~~dg~~gial~~~~~d~r~LYf~~lss~--~ly~v~T~~L~~~ 166 (287)
T PF03022_consen 107 -SFSPDPDAGPFTI----GGES-F--------Q----WPDGIFGIALSPISPDGRWLYFHPLSSR--KLYRVPTSVLRDP 166 (287)
T ss_dssp -GCTTS-SSEEEEE----TTEE-E--------E----ETTSEEEEEE-TTSTTS-EEEEEETT-S--EEEEEEHHHHCST
T ss_pred -Ccceeccccceec----cCce-E--------e----cCCCccccccCCCCCCccEEEEEeCCCC--cEEEEEHHHhhCc
Confidence 2233333222222 1111 1 1 111266677765 7778877776654 56655321
Q ss_pred c---------EEEEeecCCCCcceEEEEecCCCCEEEEEcCCCcEEEEEccCC
Q 018248 212 S---------LLQEMRRGAERAEIYSLAFSSNAQWLAASSDKGTVHVFGLKVD 255 (359)
Q Consensus 212 ~---------~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~ 255 (359)
. .+..+-. .......++++++|.++++--..+.|..|+....
T Consensus 167 ~~~~~~~~~~~v~~lG~--k~~~s~g~~~D~~G~ly~~~~~~~aI~~w~~~~~ 217 (287)
T PF03022_consen 167 SLSDAQALASQVQDLGD--KGSQSDGMAIDPNGNLYFTDVEQNAIGCWDPDGP 217 (287)
T ss_dssp T--HHH-HHHT-EEEEE-----SECEEEEETTTEEEEEECCCTEEEEEETTTS
T ss_pred cccccccccccceeccc--cCCCCceEEECCCCcEEEecCCCCeEEEEeCCCC
Confidence 1 1122211 1135567889999999998889999999998874
No 451
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=89.16 E-value=2.4 Score=38.91 Aligned_cols=33 Identities=27% Similarity=0.309 Sum_probs=26.0
Q ss_pred ceEEEEecC----CCCEEEEEcCCCcEEEEEccCCCC
Q 018248 225 EIYSLAFSS----NAQWLAASSDKGTVHVFGLKVDSG 257 (359)
Q Consensus 225 ~i~~~~~s~----~~~~l~~~~~dg~i~iw~~~~~~~ 257 (359)
....+++++ +..+|++.+.|+++|+||+.++..
T Consensus 216 ~~~~~~~~~~~~~~~~~l~tl~~D~~LRiW~l~t~~~ 252 (547)
T PF11715_consen 216 VAASLAVSSSEINDDTFLFTLSRDHTLRIWSLETGQC 252 (547)
T ss_dssp -EEEEEE-----ETTTEEEEEETTSEEEEEETTTTCE
T ss_pred ccceEEEecceeCCCCEEEEEeCCCeEEEEECCCCeE
Confidence 455666666 678999999999999999999886
No 452
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=89.11 E-value=4.7 Score=26.45 Aligned_cols=41 Identities=7% Similarity=0.081 Sum_probs=27.7
Q ss_pred eCCCCeEEEEEcCCCcEEEEeecCCCCcceEEEEecCCCCEEEEE
Q 018248 197 SSKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSNAQWLAAS 241 (359)
Q Consensus 197 ~~dg~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~ 241 (359)
..+|. +.-||..+++....+.+ -...+.+++++|+++|+.+
T Consensus 34 ~~~GR-ll~ydp~t~~~~vl~~~---L~fpNGVals~d~~~vlv~ 74 (89)
T PF03088_consen 34 RPTGR-LLRYDPSTKETTVLLDG---LYFPNGVALSPDESFVLVA 74 (89)
T ss_dssp ---EE-EEEEETTTTEEEEEEEE---ESSEEEEEE-TTSSEEEEE
T ss_pred CCCcC-EEEEECCCCeEEEehhC---CCccCeEEEcCCCCEEEEE
Confidence 34567 88999988876544443 2367899999999977665
No 453
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=88.85 E-value=6.7 Score=27.91 Aligned_cols=111 Identities=11% Similarity=0.064 Sum_probs=65.6
Q ss_pred EEEEEccCCCEEEEec-CCceEEEEcCCCc--------ceeeeecccCCCCceeEEEEec---cC-CEEEEEecCCCCCC
Q 018248 10 HHLALNQDHGCFATGT-ETGFRVYLSDPYK--------PIMRRDFDRNPRGGTQLVSMLF---RS-NIICLVNSGPHQSN 76 (359)
Q Consensus 10 ~~~~~s~~g~~l~~~~-d~~i~iw~~~~~~--------~~~~~~~~~~h~~~v~~~~~~~---~~-~~~~~~~~~~~~d~ 76 (359)
..-.|......|++++ -++|.|++..... .+....+ ...+.+++--+ +. .-.++++ ...
T Consensus 2 aiGkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNi----n~~italaaG~l~~~~~~D~LliG----t~t 73 (136)
T PF14781_consen 2 AIGKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNI----NQEITALAAGRLKPDDGRDCLLIG----TQT 73 (136)
T ss_pred eEEEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEEC----CCceEEEEEEecCCCCCcCEEEEe----ccc
Confidence 3445666677888888 8999999876321 1222233 45666665432 22 2334444 358
Q ss_pred eEEEEECCCccEEeeeccCcceeEEEEec----ceeEEE--ecCeEEEEEcccceeee
Q 018248 77 KVMIWDDHENRYLGELSFRSEVKNVRLRR----DRIVVV--LNQKVYVYNFTDLKLVD 128 (359)
Q Consensus 77 ~i~iwd~~~~~~~~~~~~~~~v~~~~~~~----~~~~~~--~d~~i~i~d~~~~~~~~ 128 (359)
.+..||+..+..+.....++.|.++.+-. ...+++ .+..|.-||.+..+...
T Consensus 74 ~llaYDV~~N~d~Fyke~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e~fW 131 (136)
T PF14781_consen 74 SLLAYDVENNSDLFYKEVPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNEIFW 131 (136)
T ss_pred eEEEEEcccCchhhhhhCccceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcEEEE
Confidence 99999999887766656667788877632 122333 55556666654444333
No 454
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=88.53 E-value=12 Score=30.62 Aligned_cols=224 Identities=14% Similarity=0.142 Sum_probs=113.8
Q ss_pred ccCCCEEEEec-CCceEEEEcCCCcce-eeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEECCCc---cEE
Q 018248 15 NQDHGCFATGT-ETGFRVYLSDPYKPI-MRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDDHEN---RYL 89 (359)
Q Consensus 15 s~~g~~l~~~~-d~~i~iw~~~~~~~~-~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~---~~~ 89 (359)
.-.|++..++. |..+-+.|+.+.... +..... .......-+++ +++....+. .|+-+.+-|+... ..+
T Consensus 135 ~vsGn~aYVadlddgfLivdvsdpssP~lagrya-~~~~d~~~v~I--SGn~AYvA~----~d~GL~ivDVSnp~sPvli 207 (370)
T COG5276 135 YVSGNYAYVADLDDGFLIVDVSDPSSPQLAGRYA-LPGGDTHDVAI--SGNYAYVAW----RDGGLTIVDVSNPHSPVLI 207 (370)
T ss_pred EecCCEEEEeeccCcEEEEECCCCCCceeeeeec-cCCCCceeEEE--ecCeEEEEE----eCCCeEEEEccCCCCCeEE
Confidence 34577887777 888888888754432 222221 11222223333 355555544 6788999987654 444
Q ss_pred eeeccCcceeEEEEecceeEEE-ecCeEEEEEcccceeeeeEec--cCCCceeeeeecCCCccEEEecCCCCeeEEEEec
Q 018248 90 GELSFRSEVKNVRLRRDRIVVV-LNQKVYVYNFTDLKLVDQIET--VVNPTGLCDVSQNAGPMVMACPGLLKGQVRVEDY 166 (359)
Q Consensus 90 ~~~~~~~~v~~~~~~~~~~~~~-~d~~i~i~d~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~g~~d~~v~~~~~ 166 (359)
........+.++..+++..+++ .+.-+.+-|..+.+....+.. ..+++....+.-.++..+++- + ..|...++..
T Consensus 208 ~~~n~g~g~~sv~vsdnr~y~vvy~egvlivd~s~~ssp~~~gsyet~~p~~~s~v~Vs~~~~Yvad-g-a~gl~~idis 285 (370)
T COG5276 208 GSYNTGPGTYSVSVSDNRAYLVVYDEGVLIVDVSGPSSPTVFGSYETSNPVSISTVPVSGEYAYVAD-G-AKGLPIIDIS 285 (370)
T ss_pred EEEecCCceEEEEecCCeeEEEEcccceEEEecCCCCCceEeeccccCCcccccceecccceeeeec-c-ccCceeEecc
Confidence 4555556788999999988888 777888888766554444322 223333323344455544543 2 2222222222
Q ss_pred CC--eeeE-EeecccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcEEEEeecCCCCcceEEEEecCCCCEEEEEcC
Q 018248 167 GT--KKSK-YITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSNAQWLAASSD 243 (359)
Q Consensus 167 ~~--~~~~-~~~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~ 243 (359)
+. ..+. .+......-..+.. .+.++..+..+ . ..+-+....+......+ ....+.+.+.+-+.+.+.+...
T Consensus 286 np~spfl~ss~~t~g~~a~gi~a--y~~y~yiadkn-~-g~vV~~s~~s~m~~~~g--~~ti~~s~~v~~~~q~~y~~d~ 359 (370)
T COG5276 286 NPPSPFLSSSLDTAGYQAAGIRA--YGNYNYIADKN-T-GAVVDASPPSMMDKRPG--RPTIGQSCDVSVDTQIIYSTDY 359 (370)
T ss_pred CCCCCchhccccCCCccccceEE--ecCeeEeccCC-c-eEEEeCCChhhcccccC--cceEeeecceEEEeeEEEEeec
Confidence 11 1111 11111112223322 23344333333 2 34444433332222221 1223344444446668888888
Q ss_pred CCcEEEEEcc
Q 018248 244 KGTVHVFGLK 253 (359)
Q Consensus 244 dg~i~iw~~~ 253 (359)
++.+.||+..
T Consensus 360 ~~gl~i~~~~ 369 (370)
T COG5276 360 NGGLSIIEYL 369 (370)
T ss_pred CCCEEEEEec
Confidence 8889999853
No 455
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=88.47 E-value=16 Score=31.69 Aligned_cols=68 Identities=15% Similarity=0.231 Sum_probs=36.6
Q ss_pred EEeecccccccEEEEccCCcEEEEEeCCCCeEEEE-EcCC-----CcE--E-EEeecCC--CCcceEEEEecCCCCEEEE
Q 018248 172 KYITAHASRIASIAMTLDGRFVATASSKGTLIRVF-NTMD-----GSL--L-QEMRRGA--ERAEIYSLAFSSNAQWLAA 240 (359)
Q Consensus 172 ~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iw-d~~~-----~~~--~-~~~~~~~--~~~~i~~~~~s~~~~~l~~ 240 (359)
..+...-.....+++.++| +++ ++.. . |..| |... ++. + ..+.... +......++|.|||.+.++
T Consensus 65 ~vfa~~l~~p~Gi~~~~~G-lyV-~~~~-~-i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~ 140 (367)
T TIGR02604 65 NVFAEELSMVTGLAVAVGG-VYV-ATPP-D-ILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFN 140 (367)
T ss_pred EEeecCCCCccceeEecCC-EEE-eCCC-e-EEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEe
Confidence 3343334456889999998 444 4444 3 4444 5421 121 1 1122210 1234778999999987776
Q ss_pred EcC
Q 018248 241 SSD 243 (359)
Q Consensus 241 ~~~ 243 (359)
-+.
T Consensus 141 ~G~ 143 (367)
T TIGR02604 141 HGN 143 (367)
T ss_pred ccc
Confidence 553
No 456
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.21 E-value=24 Score=35.11 Aligned_cols=30 Identities=27% Similarity=0.380 Sum_probs=25.6
Q ss_pred CceEEEEEccCCCEEEEec-CCceEEEEcCC
Q 018248 7 ITIHHLALNQDHGCFATGT-ETGFRVYLSDP 36 (359)
Q Consensus 7 ~~v~~~~~s~~g~~l~~~~-d~~i~iw~~~~ 36 (359)
.....++|+|.-.++|.++ .|.|++|-...
T Consensus 36 ~~~~~~afD~~q~llai~t~tg~i~~yg~~~ 66 (993)
T KOG1983|consen 36 STPSALAFDPTQGLLAIGTRTGAIKIYGQPG 66 (993)
T ss_pred CCCcceeeccccceEEEEEecccEEEecccc
Confidence 3556789999999999999 99999997653
No 457
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=88.12 E-value=15 Score=31.19 Aligned_cols=69 Identities=13% Similarity=0.161 Sum_probs=40.1
Q ss_pred ccccEEEEcc-------CCcEEEEEeCCCCeEEEEEcCCCcEEEEeec--CCCCcceEEEEecCCCCEEEEEcCCCcEE
Q 018248 179 SRIASIAMTL-------DGRFVATASSKGTLIRVFNTMDGSLLQEMRR--GAERAEIYSLAFSSNAQWLAASSDKGTVH 248 (359)
Q Consensus 179 ~~i~~~~~s~-------~~~~l~~~~~dg~~i~iwd~~~~~~~~~~~~--~~~~~~i~~~~~s~~~~~l~~~~~dg~i~ 248 (359)
..+..+.|.+ .|.++++.-..+. |....+..+..+..... ......+..+++.|||.++++...+|.|.
T Consensus 253 ~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~-i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG~Lyv~~d~~G~iy 330 (331)
T PF07995_consen 253 SAPTGIIFYRGSAFPEYRGDLFVADYGGGR-IWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDGALYVSDDSDGKIY 330 (331)
T ss_dssp --EEEEEEE-SSSSGGGTTEEEEEETTTTE-EEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTSEEEEEE-TTTTEE
T ss_pred cccCceEEECCccCccccCcEEEecCCCCE-EEEEeeecCCCccceEEccccCCCCceEEEEcCCCeEEEEECCCCeEe
Confidence 4455666653 3445655555555 77777765533322111 11334799999999999998888888764
No 458
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=87.85 E-value=23 Score=33.50 Aligned_cols=74 Identities=16% Similarity=0.179 Sum_probs=42.0
Q ss_pred ccccEEEEccCCcEEEEEeCCCC----eEEEEEcCCCcEEEEe--ecCCCCcceEEEEecCCCCEEEEEcCCCcEEEEEc
Q 018248 179 SRIASIAMTLDGRFVATASSKGT----LIRVFNTMDGSLLQEM--RRGAERAEIYSLAFSSNAQWLAASSDKGTVHVFGL 252 (359)
Q Consensus 179 ~~i~~~~~s~~~~~l~~~~~dg~----~i~iwd~~~~~~~~~~--~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~ 252 (359)
+.-..+.|-|+|..+++-..||. .|.++. ++|-.-..+ ..+ ....+..++|.-....++.+ ..+.+++|-.
T Consensus 247 g~e~~LSWkpqgS~~ati~td~~~~S~~ViFfE-rNGLrHGef~lr~~-~dEk~~~~~wn~~s~vlav~-~~n~~~lwtt 323 (1243)
T COG5290 247 GMEHQLSWKPQGSKYATIGTDGCSTSESVIFFE-RNGLRHGEFDLRVG-CDEKAFLENWNLLSTVLAVA-EGNLLKLWTT 323 (1243)
T ss_pred cchhccccccCCceeeeeccCCCCCcceEEEEc-cCCcccCCccccCC-chhhhhhhhhhHHHHHHHHh-hcceEEEEEc
Confidence 33456899999999999876653 144554 222111111 111 12345667776666555544 3456899877
Q ss_pred cCC
Q 018248 253 KVD 255 (359)
Q Consensus 253 ~~~ 255 (359)
.+-
T Consensus 324 kNy 326 (1243)
T COG5290 324 KNY 326 (1243)
T ss_pred cce
Confidence 653
No 459
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=87.75 E-value=28 Score=33.71 Aligned_cols=113 Identities=18% Similarity=0.160 Sum_probs=70.6
Q ss_pred CCceEEEEEcc-CCCEEEEec-CCceEEEEcCCCccee--eeecccCCCCc----------eeEEEEeccCCEEEEEecC
Q 018248 6 PITIHHLALNQ-DHGCFATGT-ETGFRVYLSDPYKPIM--RRDFDRNPRGG----------TQLVSMLFRSNIICLVNSG 71 (359)
Q Consensus 6 ~~~v~~~~~s~-~g~~l~~~~-d~~i~iw~~~~~~~~~--~~~~~~~h~~~----------v~~~~~~~~~~~~~~~~~~ 71 (359)
..+...++|+| +.+.||+.. .|...||++....... ...+...+.+. -.-+.|..+.+.++++.
T Consensus 145 g~~~aDv~FnP~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~-- 222 (765)
T PF10214_consen 145 GFPHADVAFNPWDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCN-- 222 (765)
T ss_pred CCccceEEeccCccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEEc--
Confidence 45677899998 456888888 9999999992111100 00110011121 22455655556666554
Q ss_pred CCCCCeEEEEECCCccEEe---eeccCcceeEEEEecc--eeEEE-ecCeEEEEEccc
Q 018248 72 PHQSNKVMIWDDHENRYLG---ELSFRSEVKNVRLRRD--RIVVV-LNQKVYVYNFTD 123 (359)
Q Consensus 72 ~~~d~~i~iwd~~~~~~~~---~~~~~~~v~~~~~~~~--~~~~~-~d~~i~i~d~~~ 123 (359)
...+.++|+++..... ..+....|.++.-++. +..++ ....|...++..
T Consensus 223 ---r~~l~~~d~~~~~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiLTs~eiiw~~~~~ 277 (765)
T PF10214_consen 223 ---RSKLMLIDFESNWQTEYLVTAKTWSWILDVKRSPDNPSHVFILTSKEIIWLDVKS 277 (765)
T ss_pred ---CCceEEEECCCCCccchhccCCChhheeeEEecCCccceEEEEecCeEEEEEccC
Confidence 5788999988876533 2225578899988887 33333 888898888855
No 460
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=87.34 E-value=13 Score=34.98 Aligned_cols=63 Identities=17% Similarity=0.266 Sum_probs=45.3
Q ss_pred CCcEEEEEeCCCCeEEEEEcCC-------C-------------cEEEEeecCCCCcceEEEEec--CCCCEEEEEcCCCc
Q 018248 189 DGRFVATASSKGTLIRVFNTMD-------G-------------SLLQEMRRGAERAEIYSLAFS--SNAQWLAASSDKGT 246 (359)
Q Consensus 189 ~~~~l~~~~~dg~~i~iwd~~~-------~-------------~~~~~~~~~~~~~~i~~~~~s--~~~~~l~~~~~dg~ 246 (359)
+...|+.+.+||. |.+|.+++ . ++...+. -....++++++ ...++||++++...
T Consensus 113 ~~EVLl~c~DdG~-V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~---v~~SaWGLdIh~~~~~rlIAVSsNs~~ 188 (717)
T PF08728_consen 113 GEEVLLLCTDDGD-VLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR---VGASAWGLDIHDYKKSRLIAVSSNSQE 188 (717)
T ss_pred CeeEEEEEecCCe-EEEEEHHHHHHHHHhhccccccccccccCCCCeEee---cCCceeEEEEEecCcceEEEEecCCce
Confidence 4558889999999 99997621 1 0112222 23578999998 78889999988888
Q ss_pred EEEEEccCC
Q 018248 247 VHVFGLKVD 255 (359)
Q Consensus 247 i~iw~~~~~ 255 (359)
|.||-+...
T Consensus 189 VTVFaf~l~ 197 (717)
T PF08728_consen 189 VTVFAFALV 197 (717)
T ss_pred EEEEEEecc
Confidence 888877664
No 461
>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=87.27 E-value=22 Score=32.14 Aligned_cols=236 Identities=11% Similarity=0.025 Sum_probs=101.8
Q ss_pred CCCceEEEEEccCCCEEEEecCCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEECC
Q 018248 5 DPITIHHLALNQDHGCFATGTETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDDH 84 (359)
Q Consensus 5 h~~~v~~~~~s~~g~~l~~~~d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~~ 84 (359)
...+|..+.++..|.+ -+|++..+..||..+++.......+ ....+..+ ..+-..-..++ .|.-+++.+.+
T Consensus 163 ~d~~V~aLv~D~~g~l-WvgT~dGL~~fd~~~gkalql~s~~--~dk~I~al--~~d~qg~LWVG----TdqGv~~~e~~ 233 (671)
T COG3292 163 KDTPVVALVFDANGRL-WVGTPDGLSYFDAGRGKALQLASPP--LDKAINAL--IADVQGRLWVG----TDQGVYLQEAE 233 (671)
T ss_pred cCccceeeeeeccCcE-EEecCCcceEEccccceEEEcCCCc--chhhHHHH--HHHhcCcEEEE----eccceEEEchh
Confidence 4577888999988854 4566556677777655433222211 11233332 22333444555 46778888755
Q ss_pred CccEEeeec--cCcceeEEEEecceeEEE-ecCeEEEEEcccceeeeeE-eccCCCceeeeeecCCCccEEEecCCCCee
Q 018248 85 ENRYLGELS--FRSEVKNVRLRRDRIVVV-LNQKVYVYNFTDLKLVDQI-ETVVNPTGLCDVSQNAGPMVMACPGLLKGQ 160 (359)
Q Consensus 85 ~~~~~~~~~--~~~~v~~~~~~~~~~~~~-~d~~i~i~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~ 160 (359)
..+...... ....|..+.-..+|.+-+ .++-+-.+........... +.+...-.+..+..|.++.+-+ +..++.
T Consensus 234 G~~~sn~~~~lp~~~I~ll~qD~qG~lWiGTenGl~r~~l~rq~Lq~~~~~~~l~~S~vnsL~~D~dGsLWv--~t~~gi 311 (671)
T COG3292 234 GWRASNWGPMLPSGNILLLVQDAQGELWIGTENGLWRTRLPRQGLQIPLSKMHLGVSTVNSLWLDTDGSLWV--GTYGGI 311 (671)
T ss_pred hccccccCCCCcchheeeeecccCCCEEEeecccceeEecCCCCccccccccCCccccccceeeccCCCEee--eccCce
Confidence 422221111 334455555455554444 4443444444333222111 2222211223333343332222 445666
Q ss_pred EEEEecCCeeeEEeecccc-cccEEEEcc--CCcEEEEEeCCCCeEEEEEcCCCcEEEEeecCCCCcceEEEEecCCCCE
Q 018248 161 VRVEDYGTKKSKYITAHAS-RIASIAMTL--DGRFVATASSKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSNAQW 237 (359)
Q Consensus 161 v~~~~~~~~~~~~~~~~~~-~i~~~~~s~--~~~~l~~~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~ 237 (359)
+++-..+-.....+....+ .+..++.+| .+..+.-...-|. +.+-+-.+|..++....- ....|+.+++..+|+.
T Consensus 312 v~~~~a~w~~ma~in~~dG~v~~~~~~a~~ll~~~v~~~ns~g~-L~van~stG~~v~sv~q~-Rg~nit~~~~d~~g~l 389 (671)
T COG3292 312 VRYLTADWKRMAVINDSDGGVSQYEAVAPALLSWGVRQLNSIGE-LMVANGSTGELVRSVHQL-RGMNITTTLEDSRGRL 389 (671)
T ss_pred EEEecchhhheeeeecCCCchhhhhccCchhcccceeeccccce-EEEecCCCCcEEEEeeec-cccccchhhhccCCcE
Confidence 6653322222122221111 111122222 1222222222333 444455556555543321 2245666666665544
Q ss_pred EEEEcCCCcEEEEEccC
Q 018248 238 LAASSDKGTVHVFGLKV 254 (359)
Q Consensus 238 l~~~~~dg~i~iw~~~~ 254 (359)
- .++...-+-.|+.++
T Consensus 390 W-lgs~q~GLsrl~n~n 405 (671)
T COG3292 390 W-LGSMQNGLSRLDNKN 405 (671)
T ss_pred E-EEecccchhhhccCC
Confidence 3 344442355566555
No 462
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=87.25 E-value=21 Score=31.83 Aligned_cols=149 Identities=13% Similarity=0.110 Sum_probs=76.2
Q ss_pred EEEEecceeEEEecCeEEEEEccccee------eeeEeccCC---CceeeeeecCCCccEEEecCCCCeeEEE-EecCCe
Q 018248 100 NVRLRRDRIVVVLNQKVYVYNFTDLKL------VDQIETVVN---PTGLCDVSQNAGPMVMACPGLLKGQVRV-EDYGTK 169 (359)
Q Consensus 100 ~~~~~~~~~~~~~d~~i~i~d~~~~~~------~~~~~~~~~---~~~~~~~~~~~~~~~l~~~g~~d~~v~~-~~~~~~ 169 (359)
.+.|-.+..++..++.|-++.-....- +..+....+ ...-+-++-....+ +...|.....++- +...++
T Consensus 423 ~Vgfrn~rsyVtR~n~IGVFk~~de~~LeF~aaiknvs~~~GKSidp~K~mlh~~dssl-i~~dg~~~~kLykmDIErGk 501 (776)
T COG5167 423 VVGFRNERSYVTRGNSIGVFKNTDEGSLEFKAAIKNVSDDGGKSIDPEKIMLHDNDSSL-IYLDGGERDKLYKMDIERGK 501 (776)
T ss_pred EEEEcccceeEeeCCeeeeEeccCCcceehhhhhhhccCCCCCcCChhhceeecCCcce-EEecCCCcccceeeecccce
Confidence 344445555555788888886533221 111111100 11112222222333 3333444444444 777788
Q ss_pred eeEEeecccccccEEEEccCCc--------EEEEEeCCCCeEEEEEcC-CCcEEEEeecCCCCcceEEEEecC----CCC
Q 018248 170 KSKYITAHASRIASIAMTLDGR--------FVATASSKGTLIRVFNTM-DGSLLQEMRRGAERAEIYSLAFSS----NAQ 236 (359)
Q Consensus 170 ~~~~~~~~~~~i~~~~~s~~~~--------~l~~~~~dg~~i~iwd~~-~~~~~~~~~~~~~~~~i~~~~~s~----~~~ 236 (359)
.+.....|... -+.|.|+.+ .| +|-.+.. |.-.|.+ .|..+.... .....+.-.||. ..-
T Consensus 502 vveeW~~~ddv--vVqy~p~~kf~qmt~eqtl-vGlS~~s-vFrIDPR~~gNKi~v~e---sKdY~tKn~Fss~~tTesG 574 (776)
T COG5167 502 VVEEWDLKDDV--VVQYNPYFKFQQMTDEQTL-VGLSDYS-VFRIDPRARGNKIKVVE---SKDYKTKNKFSSGMTTESG 574 (776)
T ss_pred eeeEeecCCcc--eeecCCchhHHhcCccceE-Eeecccc-eEEecccccCCceeeee---ehhccccccccccccccCc
Confidence 88888777654 567777533 33 3434444 5444544 343333222 122333334442 345
Q ss_pred EEEEEcCCCcEEEEEccCCC
Q 018248 237 WLAASSDKGTVHVFGLKVDS 256 (359)
Q Consensus 237 ~l~~~~~dg~i~iw~~~~~~ 256 (359)
++|.++..|.|++||.-...
T Consensus 575 yIa~as~kGDirLyDRig~r 594 (776)
T COG5167 575 YIAAASRKGDIRLYDRIGKR 594 (776)
T ss_pred eEEEecCCCceeeehhhcch
Confidence 99999999999999975543
No 463
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=86.96 E-value=6.3 Score=34.29 Aligned_cols=157 Identities=14% Similarity=0.124 Sum_probs=86.2
Q ss_pred cCcceeEEEEecceeEEE--ecCeEEEEEcccceee-eeE-eccCCC----ce-eeeeecCCCccEEEecCCCCeeEEEE
Q 018248 94 FRSEVKNVRLRRDRIVVV--LNQKVYVYNFTDLKLV-DQI-ETVVNP----TG-LCDVSQNAGPMVMACPGLLKGQVRVE 164 (359)
Q Consensus 94 ~~~~v~~~~~~~~~~~~~--~d~~i~i~d~~~~~~~-~~~-~~~~~~----~~-~~~~~~~~~~~~l~~~g~~d~~v~~~ 164 (359)
....+..+-..|+|+.+. ...++.++++.+.... +++ +...+. +. .+.+ -.+...+++ ++.||.|.-|
T Consensus 219 ~~~~v~qllL~Pdg~~LYv~~g~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~l-L~Gg~SLLv--~~~dG~vsQW 295 (733)
T COG4590 219 PFSDVSQLLLTPDGKTLYVRTGSELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYL-LSGGFSLLV--VHEDGLVSQW 295 (733)
T ss_pred CccchHhhEECCCCCEEEEecCCeEEEEeecccccchhhhhhcCCCchHHHHHHHHHH-HhCceeEEE--EcCCCceeee
Confidence 445677788899998887 6788888888443211 111 111111 11 1111 122222333 4578888774
Q ss_pred e-cC-C-e----eeEEeecccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcEEEEeecCCCCcceEEEEecCCCCE
Q 018248 165 D-YG-T-K----KSKYITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSNAQW 237 (359)
Q Consensus 165 ~-~~-~-~----~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~ 237 (359)
- .. + . .++.++-...++..+.-..+.+-+++-+..|. +.++.....+.+ .+.. --..+.-+++||++.+
T Consensus 296 Fdvr~~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~-L~~f~st~~~~l-L~~~--~~~~~~~~~~Sp~~~~ 371 (733)
T COG4590 296 FDVRRDGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGT-LQSFYSTSEKLL-LFER--AYQAPQLVAMSPNQAY 371 (733)
T ss_pred eeeecCCCCcceeeeccccCcccceeeccccccceEEEEcCCCc-eeeeecccCcce-ehhh--hhcCcceeeeCcccch
Confidence 2 22 1 1 11222222233333332234456777788888 887764333332 2222 1125677899999999
Q ss_pred EEEEcCCCcEEEEEccCCCCC
Q 018248 238 LAASSDKGTVHVFGLKVDSGS 258 (359)
Q Consensus 238 l~~~~~dg~i~iw~~~~~~~~ 258 (359)
|++- +.|.++++.+++..+.
T Consensus 372 Ll~e-~~gki~~~~l~Nr~Pe 391 (733)
T COG4590 372 LLSE-DQGKIRLAQLENRNPE 391 (733)
T ss_pred heee-cCCceEEEEecCCCCC
Confidence 9864 4567999999987754
No 464
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=86.92 E-value=13 Score=29.01 Aligned_cols=45 Identities=18% Similarity=0.160 Sum_probs=35.0
Q ss_pred CEEEEEecCCCCCCeEEEEECC--CccEEeeeccCcceeEEEEecceeEEE
Q 018248 63 NIICLVNSGPHQSNKVMIWDDH--ENRYLGELSFRSEVKNVRLRRDRIVVV 111 (359)
Q Consensus 63 ~~~~~~~~~~~~d~~i~iwd~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~ 111 (359)
+.++++. ....|.+|++. ..+.+..+..-+.|..+.++..|.+++
T Consensus 29 d~Lfva~----~g~~Vev~~l~~~~~~~~~~F~Tv~~V~~l~y~~~GDYlv 75 (215)
T PF14761_consen 29 DALFVAA----SGCKVEVYDLEQEECPLLCTFSTVGRVLQLVYSEAGDYLV 75 (215)
T ss_pred ceEEEEc----CCCEEEEEEcccCCCceeEEEcchhheeEEEeccccceEE
Confidence 5555554 23889999988 346677777668999999999999998
No 465
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=86.70 E-value=5 Score=36.90 Aligned_cols=74 Identities=7% Similarity=0.176 Sum_probs=41.1
Q ss_pred cCCCEEEEec-CCceEEEEcCC---Ccceeee-eccc-------------------CCCCceeEEEEec----cCCEEEE
Q 018248 16 QDHGCFATGT-ETGFRVYLSDP---YKPIMRR-DFDR-------------------NPRGGTQLVSMLF----RSNIICL 67 (359)
Q Consensus 16 ~~g~~l~~~~-d~~i~iw~~~~---~~~~~~~-~~~~-------------------~h~~~v~~~~~~~----~~~~~~~ 67 (359)
++...++++. ||.+....... ....... .+.. .........++.. ....++.
T Consensus 156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t 235 (547)
T PF11715_consen 156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFT 235 (547)
T ss_dssp -SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEE
T ss_pred cCCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEE
Confidence 3666777777 99988777664 1111111 1100 0012334455555 5567777
Q ss_pred EecCCCCCCeEEEEECCCccEEeeec
Q 018248 68 VNSGPHQSNKVMIWDDHENRYLGELS 93 (359)
Q Consensus 68 ~~~~~~~d~~i~iwd~~~~~~~~~~~ 93 (359)
++ .|+++|+||+.+++++....
T Consensus 236 l~----~D~~LRiW~l~t~~~~~~~~ 257 (547)
T PF11715_consen 236 LS----RDHTLRIWSLETGQCLATID 257 (547)
T ss_dssp EE----TTSEEEEEETTTTCEEEEEE
T ss_pred Ee----CCCeEEEEECCCCeEEEEec
Confidence 77 79999999999999976654
No 466
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=86.45 E-value=25 Score=31.79 Aligned_cols=136 Identities=11% Similarity=0.051 Sum_probs=64.4
Q ss_pred cCeEEEEEcccceeeeeEeccCCCceeeeeecCCCccEEEecCCCCeeEEEEecCCeeeEEeeccccc---ccEEEEccC
Q 018248 113 NQKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAGPMVMACPGLLKGQVRVEDYGTKKSKYITAHASR---IASIAMTLD 189 (359)
Q Consensus 113 d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~v~~~~~~~~~~~~~~~~~~~---i~~~~~s~~ 189 (359)
.....++|. .|.....+.........+...+++. +++.. ...++..+..++.+......... =..+..-|+
T Consensus 127 ~~~~~~iD~-~G~Vrw~~~~~~~~~~~~~~l~nG~--ll~~~---~~~~~e~D~~G~v~~~~~l~~~~~~~HHD~~~l~n 200 (477)
T PF05935_consen 127 SSYTYLIDN-NGDVRWYLPLDSGSDNSFKQLPNGN--LLIGS---GNRLYEIDLLGKVIWEYDLPGGYYDFHHDIDELPN 200 (477)
T ss_dssp EEEEEEEET-TS-EEEEE-GGGT--SSEEE-TTS---EEEEE---BTEEEEE-TT--EEEEEE--TTEE-B-S-EEE-TT
T ss_pred CceEEEECC-CccEEEEEccCccccceeeEcCCCC--EEEec---CCceEEEcCCCCEEEeeecCCcccccccccEECCC
Confidence 356666664 5555555544332222233445554 34432 25666677777766655433322 356778899
Q ss_pred CcEEEEEeC-------------CCCeEEEEEcCCCcEEEEeecCCC-------------------------CcceEEEEe
Q 018248 190 GRFVATASS-------------KGTLIRVFNTMDGSLLQEMRRGAE-------------------------RAEIYSLAF 231 (359)
Q Consensus 190 ~~~l~~~~~-------------dg~~i~iwd~~~~~~~~~~~~~~~-------------------------~~~i~~~~~ 231 (359)
|++|+.+.. ... |...| .+|+.+..+....| =..++++.+
T Consensus 201 Gn~L~l~~~~~~~~~~~~~~~~~D~-Ivevd-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~y 278 (477)
T PF05935_consen 201 GNLLILASETKYVDEDKDVDTVEDV-IVEVD-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSIDY 278 (477)
T ss_dssp S-EEEEEEETTEE-TS-EE---S-E-EEEE--TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEEEEE
T ss_pred CCEEEEEeecccccCCCCccEecCE-EEEEC-CCCCEEEEEehHHhCCcccccccccccccccccCCCCCCccccCccEE
Confidence 998887772 112 55556 66666655332111 024788999
Q ss_pred cC-CCCEEEEEcCCCcEEEEEccCCC
Q 018248 232 SS-NAQWLAASSDKGTVHVFGLKVDS 256 (359)
Q Consensus 232 s~-~~~~l~~~~~dg~i~iw~~~~~~ 256 (359)
.+ ++.+|+++-.-..|...|.++++
T Consensus 279 d~~dd~iivSsR~~s~V~~Id~~t~~ 304 (477)
T PF05935_consen 279 DPSDDSIIVSSRHQSAVIKIDYRTGK 304 (477)
T ss_dssp ETTTTEEEEEETTT-EEEEEE-TTS-
T ss_pred eCCCCeEEEEcCcceEEEEEECCCCc
Confidence 88 66666666555567777755543
No 467
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=85.85 E-value=17 Score=34.38 Aligned_cols=103 Identities=6% Similarity=0.031 Sum_probs=60.8
Q ss_pred CceeEEEEeccCCEEEEEecCCC-CCCeEEEEEC---CCccEEeeeccCcceeEEEEecceeEEE--ecCeEEEEEcccc
Q 018248 51 GGTQLVSMLFRSNIICLVNSGPH-QSNKVMIWDD---HENRYLGELSFRSEVKNVRLRRDRIVVV--LNQKVYVYNFTDL 124 (359)
Q Consensus 51 ~~v~~~~~~~~~~~~~~~~~~~~-~d~~i~iwd~---~~~~~~~~~~~~~~v~~~~~~~~~~~~~--~d~~i~i~d~~~~ 124 (359)
+.-..++|-|.+..++....... ....|.++.. +-|+.-........+..++|+-....++ ..+.+++|-..+-
T Consensus 247 g~e~~LSWkpqgS~~ati~td~~~~S~~ViFfErNGLrHGef~lr~~~dEk~~~~~wn~~s~vlav~~~n~~~lwttkNy 326 (1243)
T COG5290 247 GMEHQLSWKPQGSKYATIGTDGCSTSESVIFFERNGLRHGEFDLRVGCDEKAFLENWNLLSTVLAVAEGNLLKLWTTKNY 326 (1243)
T ss_pred cchhccccccCCceeeeeccCCCCCcceEEEEccCCcccCCccccCCchhhhhhhhhhHHHHHHHHhhcceEEEEEccce
Confidence 33345778888888877763221 2244555552 1223322333445566777876666555 7889999986554
Q ss_pred eeeeeEeccCCCceeeeeecCCCccEEEe
Q 018248 125 KLVDQIETVVNPTGLCDVSQNAGPMVMAC 153 (359)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 153 (359)
.-....+..-..+..+.|+|..+..++..
T Consensus 327 hWYLK~e~~ip~~s~vkwhpe~~nTl~f~ 355 (1243)
T COG5290 327 HWYLKVERQIPGISYVKWHPEEKNTLLFR 355 (1243)
T ss_pred EEEEEEeecCCCcceeeeccccCcEEEEe
Confidence 33222233334456789999888766665
No 468
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=84.87 E-value=21 Score=29.62 Aligned_cols=211 Identities=9% Similarity=0.068 Sum_probs=103.3
Q ss_pred ceEEEEEccCCCEEEE--ec-C----------CceEEEEcCCCcceeeeeccc--C-CCCceeEEEEeccC----CEEEE
Q 018248 8 TIHHLALNQDHGCFAT--GT-E----------TGFRVYLSDPYKPIMRRDFDR--N-PRGGTQLVSMLFRS----NIICL 67 (359)
Q Consensus 8 ~v~~~~~s~~g~~l~~--~~-d----------~~i~iw~~~~~~~~~~~~~~~--~-h~~~v~~~~~~~~~----~~~~~ 67 (359)
.|..+...+++++=+. |. + -.|.+||+.+.+......+.. . .......+.+.... +..++
T Consensus 2 sV~~v~iD~~~rLWVlD~G~~~~~~~~~~~~~pKLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aY 81 (287)
T PF03022_consen 2 SVQRVQIDECGRLWVLDSGRPNGLQPPKQVCPPKLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAY 81 (287)
T ss_dssp -EEEEEE-TTSEEEEEE-CCHSSSSTTGHTS--EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEE
T ss_pred cccEEEEcCCCCEEEEeCCCcCCCCCCCCCCCcEEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEE
Confidence 4677888887776554 32 1 258899999988766666641 0 12234445555432 25666
Q ss_pred EecCCCCCCeEEEEECCCccEEeeeccCcceeEEEEecceeEEEecCeEEEEEcccceeeeeEeccCCCceeeeeec---
Q 018248 68 VNSGPHQSNKVMIWDDHENRYLGELSFRSEVKNVRLRRDRIVVVLNQKVYVYNFTDLKLVDQIETVVNPTGLCDVSQ--- 144 (359)
Q Consensus 68 ~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~--- 144 (359)
++... .+-|.++|+.+++..+.+.+. +...|+...+..+|...-|. .+ +..++++|
T Consensus 82 ItD~~--~~glIV~dl~~~~s~Rv~~~~-----~~~~p~~~~~~i~g~~~~~~--dg------------~~gial~~~~~ 140 (287)
T PF03022_consen 82 ITDSG--GPGLIVYDLATGKSWRVLHNS-----FSPDPDAGPFTIGGESFQWP--DG------------IFGIALSPISP 140 (287)
T ss_dssp EEETT--TCEEEEEETTTTEEEEEETCG-----CTTS-SSEEEEETTEEEEET--TS------------EEEEEE-TTST
T ss_pred EeCCC--cCcEEEEEccCCcEEEEecCC-----cceeccccceeccCceEecC--CC------------ccccccCCCCC
Confidence 66553 479999999999877666531 11112222222223222111 12 22233332
Q ss_pred CCCccEEEecCCCCeeEEEE---ecCC---------eeeEEeecccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCC-
Q 018248 145 NAGPMVMACPGLLKGQVRVE---DYGT---------KKSKYITAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDG- 211 (359)
Q Consensus 145 ~~~~~~l~~~g~~d~~v~~~---~~~~---------~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~- 211 (359)
+++.++... -+....-++- ..+. ..++.+-........++++++|.+.++--..+. |..|+..+.
T Consensus 141 d~r~LYf~~-lss~~ly~v~T~~L~~~~~~~~~~~~~~v~~lG~k~~~s~g~~~D~~G~ly~~~~~~~a-I~~w~~~~~~ 218 (287)
T PF03022_consen 141 DGRWLYFHP-LSSRKLYRVPTSVLRDPSLSDAQALASQVQDLGDKGSQSDGMAIDPNGNLYFTDVEQNA-IGCWDPDGPY 218 (287)
T ss_dssp TS-EEEEEE-TT-SEEEEEEHHHHCSTT--HHH-HHHT-EEEEE---SECEEEEETTTEEEEEECCCTE-EEEEETTTSB
T ss_pred CccEEEEEe-CCCCcEEEEEHHHhhCccccccccccccceeccccCCCCceEEECCCCcEEEecCCCCe-EEEEeCCCCc
Confidence 332322221 1111112221 1111 112222211246678899999998888888888 999998651
Q ss_pred --cEEEEeecCCC-CcceEEEEecC--CCCEEEEE
Q 018248 212 --SLLQEMRRGAE-RAEIYSLAFSS--NAQWLAAS 241 (359)
Q Consensus 212 --~~~~~~~~~~~-~~~i~~~~~s~--~~~~l~~~ 241 (359)
+....+..... -..+.++.+.+ +|.+.+..
T Consensus 219 ~~~~~~~l~~d~~~l~~pd~~~i~~~~~g~L~v~s 253 (287)
T PF03022_consen 219 TPENFEILAQDPRTLQWPDGLKIDPEGDGYLWVLS 253 (287)
T ss_dssp -GCCEEEEEE-CC-GSSEEEEEE-T--TS-EEEEE
T ss_pred CccchheeEEcCceeeccceeeeccccCceEEEEE
Confidence 12222222112 35778899988 67655554
No 469
>PRK13684 Ycf48-like protein; Provisional
Probab=84.36 E-value=25 Score=30.00 Aligned_cols=113 Identities=16% Similarity=0.112 Sum_probs=59.3
Q ss_pred CceeeeeecCCCccEEEecCCCCeeEEE-EecCCeeeEEe-ecccccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcE
Q 018248 136 PTGLCDVSQNAGPMVMACPGLLKGQVRV-EDYGTKKSKYI-TAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSL 213 (359)
Q Consensus 136 ~~~~~~~~~~~~~~~l~~~g~~d~~v~~-~~~~~~~~~~~-~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~ 213 (359)
.+..+.+.+++ .++++ | ..|.+.. .+..++.-... ..-...++++.+.++++.++++ ..|. +.+=....|..
T Consensus 174 ~~~~i~~~~~g--~~v~~-g-~~G~i~~s~~~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg-~~G~-~~~~s~d~G~s 247 (334)
T PRK13684 174 VVRNLRRSPDG--KYVAV-S-SRGNFYSTWEPGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLA-RGGQ-IRFNDPDDLES 247 (334)
T ss_pred eEEEEEECCCC--eEEEE-e-CCceEEEEcCCCCCeEEEeeCCCcccceeeeEcCCCCEEEEe-cCCE-EEEccCCCCCc
Confidence 34455565654 34554 3 3666655 23333322222 2334678999999999877665 4565 43222334433
Q ss_pred EEEeecC--CCCcceEEEEecCCCCEEEEEcCCCcEEEEEccCCC
Q 018248 214 LQEMRRG--AERAEIYSLAFSSNAQWLAASSDKGTVHVFGLKVDS 256 (359)
Q Consensus 214 ~~~~~~~--~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~ 256 (359)
-.....+ .....+.++.+.|+++.+++ +.+|.+. ...+.++
T Consensus 248 W~~~~~~~~~~~~~l~~v~~~~~~~~~~~-G~~G~v~-~S~d~G~ 290 (334)
T PRK13684 248 WSKPIIPEITNGYGYLDLAYRTPGEIWAG-GGNGTLL-VSKDGGK 290 (334)
T ss_pred cccccCCccccccceeeEEEcCCCCEEEE-cCCCeEE-EeCCCCC
Confidence 2222211 01235788999998876654 5567444 3444433
No 470
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=84.20 E-value=12 Score=33.41 Aligned_cols=76 Identities=16% Similarity=0.262 Sum_probs=48.4
Q ss_pred cccEEEEccCCcEEEEEeCCCCeEEEEEc----------CCCcEEEEee---------cCCCCcceEEEEecCCC---CE
Q 018248 180 RIASIAMTLDGRFVATASSKGTLIRVFNT----------MDGSLLQEMR---------RGAERAEIYSLAFSSNA---QW 237 (359)
Q Consensus 180 ~i~~~~~s~~~~~l~~~~~dg~~i~iwd~----------~~~~~~~~~~---------~~~~~~~i~~~~~s~~~---~~ 237 (359)
.|..+..++.|..++-++.+|. .|..+ ++|+.....+ .....-.+..++|+|+. ..
T Consensus 105 eV~~vl~s~~GS~VaL~G~~Gi--~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~h 182 (741)
T KOG4460|consen 105 EVYQVLLSPTGSHVALIGIKGL--MVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPH 182 (741)
T ss_pred EEEEEEecCCCceEEEecCCee--EEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCce
Confidence 4566777888888888888874 33333 2343222111 00011256678999976 56
Q ss_pred EEEEcCCCcEEEEEccCCCC
Q 018248 238 LAASSDKGTVHVFGLKVDSG 257 (359)
Q Consensus 238 l~~~~~dg~i~iw~~~~~~~ 257 (359)
|..-+.|..+|+||+.....
T Consensus 183 L~iL~sdnviRiy~lS~~te 202 (741)
T KOG4460|consen 183 LVLLTSDNVIRIYSLSEPTE 202 (741)
T ss_pred EEEEecCcEEEEEecCCcch
Confidence 77778899999999987653
No 471
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=84.08 E-value=29 Score=30.57 Aligned_cols=62 Identities=19% Similarity=0.243 Sum_probs=36.8
Q ss_pred EEEEEeCCCCeEEEEEcCCCcEEEEeecCCCCcceEEEEecCCCCEEEEEcCCCcEEEEEccCCC
Q 018248 192 FVATASSKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSNAQWLAASSDKGTVHVFGLKVDS 256 (359)
Q Consensus 192 ~l~~~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~ 256 (359)
.++.++.++. +.||. ..+.+........+-.|.-..|..-...|++-+.+|.+.+-=+-+..
T Consensus 302 ~llV~t~t~~-LlVy~--d~~L~WsA~l~~~PVal~v~~~~~~~G~IV~Ls~~G~L~v~YLGTdP 363 (418)
T PF14727_consen 302 NLLVGTHTGT-LLVYE--DTTLVWSAQLPHVPVALSVANFNGLKGLIVSLSDEGQLSVSYLGTDP 363 (418)
T ss_pred EEEEEecCCe-EEEEe--CCeEEEecCCCCCCEEEEecccCCCCceEEEEcCCCcEEEEEeCCCC
Confidence 4677778888 88885 34444444332111122222233334578888999999998887755
No 472
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=84.00 E-value=13 Score=26.50 Aligned_cols=74 Identities=16% Similarity=0.260 Sum_probs=49.4
Q ss_pred CceEEEEEcc-----CCCEEEEecCCceEEEEcCCCcceeeeecccCCCCceeEEEEe---ccCCEEEEEecCCCCCCeE
Q 018248 7 ITIHHLALNQ-----DHGCFATGTETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSML---FRSNIICLVNSGPHQSNKV 78 (359)
Q Consensus 7 ~~v~~~~~s~-----~g~~l~~~~d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~---~~~~~~~~~~~~~~~d~~i 78 (359)
..|++++-.+ +...|+.|+...+..||++.....+.+.+ .+.+.++.+- ..+..++++++ +..|
T Consensus 48 ~~italaaG~l~~~~~~D~LliGt~t~llaYDV~~N~d~Fyke~----~DGvn~i~~g~~~~~~~~l~ivGG----ncsi 119 (136)
T PF14781_consen 48 QEITALAAGRLKPDDGRDCLLIGTQTSLLAYDVENNSDLFYKEV----PDGVNAIVIGKLGDIPSPLVIVGG----NCSI 119 (136)
T ss_pred CceEEEEEEecCCCCCcCEEEEeccceEEEEEcccCchhhhhhC----ccceeEEEEEecCCCCCcEEEECc----eEEE
Confidence 4566665443 45678899999999999998888877777 4666665543 33456677773 4667
Q ss_pred EEEECCCccE
Q 018248 79 MIWDDHENRY 88 (359)
Q Consensus 79 ~iwd~~~~~~ 88 (359)
.-+|.+..+.
T Consensus 120 ~Gfd~~G~e~ 129 (136)
T PF14781_consen 120 QGFDYEGNEI 129 (136)
T ss_pred EEeCCCCcEE
Confidence 7777444333
No 473
>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)
Probab=83.67 E-value=25 Score=29.44 Aligned_cols=72 Identities=19% Similarity=0.394 Sum_probs=52.8
Q ss_pred cccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcEEEEeecCCCCc----ceEEEEecCCCCEEEEEcCCCcEEEEEcc
Q 018248 180 RIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRRGAERA----EIYSLAFSSNAQWLAASSDKGTVHVFGLK 253 (359)
Q Consensus 180 ~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~~~~~~~~~~~~----~i~~~~~s~~~~~l~~~~~dg~i~iw~~~ 253 (359)
-+++|...++|.+|+++-.-.. |.+.|-++|+.+-.+.+. ..+ .-..+++-.|-+++-....++.|.++|=.
T Consensus 145 HiNsV~~~~~G~yLiS~R~~~~-i~~I~~~tG~I~W~lgG~-~~~df~~~~~~f~~QHdar~~~~~~~~~~IslFDN~ 220 (299)
T PF14269_consen 145 HINSVDKDDDGDYLISSRNTST-IYKIDPSTGKIIWRLGGK-RNSDFTLPATNFSWQHDARFLNESNDDGTISLFDNA 220 (299)
T ss_pred EeeeeeecCCccEEEEecccCE-EEEEECCCCcEEEEeCCC-CCCcccccCCcEeeccCCEEeccCCCCCEEEEEcCC
Confidence 3677788889999998887777 999999999998888643 111 11224555566677666788999999984
No 474
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=83.60 E-value=47 Score=32.65 Aligned_cols=176 Identities=14% Similarity=0.120 Sum_probs=90.7
Q ss_pred ceEEEEcCCCcceeeeecccC-CCCceeEEEEeccCCE-EEEEecCCC--------CCCeEEEEECC-CccEE---eeec
Q 018248 28 GFRVYLSDPYKPIMRRDFDRN-PRGGTQLVSMLFRSNI-ICLVNSGPH--------QSNKVMIWDDH-ENRYL---GELS 93 (359)
Q Consensus 28 ~i~iw~~~~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~-~~~~~~~~~--------~d~~i~iwd~~-~~~~~---~~~~ 93 (359)
.|+++|..+++......+... -.-.+..+.++..+.. +..++.... .++.++.|++. .|+.+ ....
T Consensus 854 ~I~~~d~~s~~~~~~~~l~~ne~a~~v~~~~fs~~~~~~~~~v~~~~~~~l~~~~~~~g~~ytyk~~~~g~~lellh~T~ 933 (1205)
T KOG1898|consen 854 SIRVFDPKSGKIICLVELGQNEAAFSVCAVDFSSSEYQPFVAVGVATTEQLDSKSISSGFVYTYKFVRNGDKLELLHKTE 933 (1205)
T ss_pred eEEEEcCCCCceEEEEeecCCcchhheeeeeeccCCCceEEEEEeeccccccccccCCCceEEEEEEecCceeeeeeccC
Confidence 377777776666555554311 0112333344433333 222222111 34557777643 34422 2222
Q ss_pred cCcceeEEEEecceeEEE-ecCeEEEEEcccceeeeeEeccCCCceeeeeecCCCccEEEecCCCCeeEEE-EecCCeee
Q 018248 94 FRSEVKNVRLRRDRIVVV-LNQKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAGPMVMACPGLLKGQVRV-EDYGTKKS 171 (359)
Q Consensus 94 ~~~~v~~~~~~~~~~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~v~~-~~~~~~~~ 171 (359)
-++.+..++-.. +.+++ ....+++||+...++++..+...-+..+..+...... ++.+...++...+ |....+.+
T Consensus 934 ~~~~v~Ai~~f~-~~~LagvG~~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt~~~R--I~VgD~qeSV~~~~y~~~~n~l 1010 (1205)
T KOG1898|consen 934 IPGPVGAICPFQ-GRVLAGVGRFLRLYDLGKKKLLRKCELKFIPNRISSIQTYGAR--IVVGDIQESVHFVRYRREDNQL 1010 (1205)
T ss_pred CCccceEEeccC-CEEEEecccEEEEeeCChHHHHhhhhhccCceEEEEEeecceE--EEEeeccceEEEEEEecCCCeE
Confidence 344554444332 35555 8899999999776666555433333344444445554 4443445555444 88877777
Q ss_pred EEeecc--cccccEEEEccCCcEEEEEeCCCCeEEEEEc
Q 018248 172 KYITAH--ASRIASIAMTLDGRFVATASSKGTLIRVFNT 208 (359)
Q Consensus 172 ~~~~~~--~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~ 208 (359)
..+... ...|+++.+- |..-+|.+..-|. +.+-.+
T Consensus 1011 ~~fadD~~pR~Vt~~~~l-D~~tvagaDrfGN-i~~vR~ 1047 (1205)
T KOG1898|consen 1011 IVFADDPVPRHVTALELL-DYDTVAGADRFGN-IAVVRI 1047 (1205)
T ss_pred EEEeCCCccceeeEEEEe-cCCceeeccccCc-EEEEEC
Confidence 766543 3345555553 4445666766676 665554
No 475
>PF12341 DUF3639: Protein of unknown function (DUF3639) ; InterPro: IPR022100 This domain family is found in eukaryotes, and is approximately 30 amino acids in length. The family is found in association with PF00400 from PFAM. There are two completely conserved residues (E and R) that may be functionally important.
Probab=83.25 E-value=3.7 Score=19.89 Aligned_cols=25 Identities=8% Similarity=0.008 Sum_probs=19.6
Q ss_pred cEEEeeecccCCEEEEEecCCeEEEEE
Q 018248 309 VQYLVGFGRQNNTIVIVGLDGSYYKCE 335 (359)
Q Consensus 309 ~v~~~~~s~~~~~l~~~~~dg~i~v~~ 335 (359)
.|.+++.++ ++++++++-+.+++|.
T Consensus 3 ~i~aia~g~--~~vavaTS~~~lRifs 27 (27)
T PF12341_consen 3 EIEAIAAGD--SWVAVATSAGYLRIFS 27 (27)
T ss_pred eEEEEEccC--CEEEEEeCCCeEEecC
Confidence 455666665 5999999999999983
No 476
>TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171. This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown.
Probab=82.96 E-value=8.4 Score=36.94 Aligned_cols=77 Identities=23% Similarity=0.230 Sum_probs=50.1
Q ss_pred eeEEEEecCCeeeEEe-ecccccccEEEEccCCcEEEE-EeCCC---C-eEEEEEcCC-CcEEEEeecCCCCcceEEEEe
Q 018248 159 GQVRVEDYGTKKSKYI-TAHASRIASIAMTLDGRFVAT-ASSKG---T-LIRVFNTMD-GSLLQEMRRGAERAEIYSLAF 231 (359)
Q Consensus 159 ~~v~~~~~~~~~~~~~-~~~~~~i~~~~~s~~~~~l~~-~~~dg---~-~i~iwd~~~-~~~~~~~~~~~~~~~i~~~~~ 231 (359)
+.+.+-+.++...+.+ ..+..+|.+.+|||||+.||. .+.++ . .|++-|+.+ +..+..+.. ....|..-..
T Consensus 329 ~~L~~~D~dG~n~~~ve~~~~~~i~sP~~SPDG~~vAY~ts~e~~~g~s~vYv~~L~t~~~~~vkl~v--e~aaiprwrv 406 (912)
T TIGR02171 329 GNLAYIDYTKGASRAVEIEDTISVYHPDISPDGKKVAFCTGIEGLPGKSSVYVRNLNASGSGLVKLPV--ENAAIPRWRV 406 (912)
T ss_pred CeEEEEecCCCCceEEEecCCCceecCcCCCCCCEEEEEEeecCCCCCceEEEEehhccCCCceEeec--ccccccceEe
Confidence 4666666666555555 567888999999999999987 44444 2 177878765 333344443 3456666666
Q ss_pred cCCCCE
Q 018248 232 SSNAQW 237 (359)
Q Consensus 232 s~~~~~ 237 (359)
.++|..
T Consensus 407 ~e~gdt 412 (912)
T TIGR02171 407 LENGDT 412 (912)
T ss_pred cCCCCe
Confidence 666654
No 477
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=82.18 E-value=4.4 Score=19.69 Aligned_cols=26 Identities=27% Similarity=0.271 Sum_probs=18.6
Q ss_pred ceEEEEecCCCCEEEEEcCCCcEEEE
Q 018248 225 EIYSLAFSSNAQWLAASSDKGTVHVF 250 (359)
Q Consensus 225 ~i~~~~~s~~~~~l~~~~~dg~i~iw 250 (359)
....++.+++|+++++=+....|++|
T Consensus 3 ~P~gvav~~~g~i~VaD~~n~rV~vf 28 (28)
T PF01436_consen 3 YPHGVAVDSDGNIYVADSGNHRVQVF 28 (28)
T ss_dssp SEEEEEEETTSEEEEEECCCTEEEEE
T ss_pred CCcEEEEeCCCCEEEEECCCCEEEEC
Confidence 35677888888888777777766654
No 478
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=82.05 E-value=27 Score=28.87 Aligned_cols=52 Identities=15% Similarity=0.312 Sum_probs=36.8
Q ss_pred EEEEEcCCCcEEEEeecCCCCcceEEEEecCCCCEEEEEc------CCCcEEEEEccCCC
Q 018248 203 IRVFNTMDGSLLQEMRRGAERAEIYSLAFSSNAQWLAASS------DKGTVHVFGLKVDS 256 (359)
Q Consensus 203 i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~------~dg~i~iw~~~~~~ 256 (359)
|++||..+.+-..--. + -.+.|+++.|..+.++++.|. ....+..||+++..
T Consensus 18 lC~yd~~~~qW~~~g~-~-i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~ 75 (281)
T PF12768_consen 18 LCLYDTDNSQWSSPGN-G-ISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQT 75 (281)
T ss_pred EEEEECCCCEeecCCC-C-ceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCe
Confidence 9999987665443222 2 457899999987777777664 34568888888765
No 479
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=81.47 E-value=38 Score=30.02 Aligned_cols=30 Identities=17% Similarity=0.190 Sum_probs=24.9
Q ss_pred cEEEeeecccCCEEEEEecCCeEEEEEeCC
Q 018248 309 VQYLVGFGRQNNTIVIVGLDGSYYKCEFDP 338 (359)
Q Consensus 309 ~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~ 338 (359)
.+..++..+..+.|++.+.+|.|.+|++..
T Consensus 191 ~I~~v~~d~~r~~ly~l~~~~~Iq~w~l~~ 220 (422)
T PF08801_consen 191 KIVQVAVDPSRRLLYTLTSDGSIQVWDLGP 220 (422)
T ss_dssp -EEEEEEETTTTEEEEEESSE-EEEEEE-S
T ss_pred ceeeEEecCCcCEEEEEeCCCcEEEEEEeC
Confidence 477888888889999999999999999987
No 480
>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides. The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity
Probab=81.27 E-value=4 Score=26.55 Aligned_cols=29 Identities=3% Similarity=-0.054 Sum_probs=24.5
Q ss_pred EEEeeecccCCEEEEEec-CCeEEEEEeCC
Q 018248 310 QYLVGFGRQNNTIVIVGL-DGSYYKCEFDP 338 (359)
Q Consensus 310 v~~~~~s~~~~~l~~~~~-dg~i~v~~~~~ 338 (359)
.+.++++|+++.|++++. .+.|++|+...
T Consensus 56 aNGI~~s~~~k~lyVa~~~~~~I~vy~~~~ 85 (86)
T PF01731_consen 56 ANGIAISPDKKYLYVASSLAHSIHVYKRHK 85 (86)
T ss_pred CceEEEcCCCCEEEEEeccCCeEEEEEecC
Confidence 368999999999988887 78999998753
No 481
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=81.02 E-value=56 Score=31.71 Aligned_cols=78 Identities=14% Similarity=0.141 Sum_probs=51.9
Q ss_pred cccccEEEEccC-CcEEEEEeCCCCeEEEEEcCCCc----EEEEeecCC---------CCcceEEEEecCCCCEEEEEcC
Q 018248 178 ASRIASIAMTLD-GRFVATASSKGTLIRVFNTMDGS----LLQEMRRGA---------ERAEIYSLAFSSNAQWLAASSD 243 (359)
Q Consensus 178 ~~~i~~~~~s~~-~~~l~~~~~dg~~i~iwd~~~~~----~~~~~~~~~---------~~~~i~~~~~s~~~~~l~~~~~ 243 (359)
..+...++|+|. .+.||+....|. ..||++.... ....+.... ....-..+.|.++...|+.++.
T Consensus 145 g~~~aDv~FnP~~~~q~AiVD~~G~-Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~r 223 (765)
T PF10214_consen 145 GFPHADVAFNPWDQRQFAIVDEKGN-WSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCNR 223 (765)
T ss_pred CCccceEEeccCccceEEEEeccCc-EEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEEcC
Confidence 346778999984 458999999999 9999992111 111111100 1123347889888888887765
Q ss_pred CCcEEEEEccCCCC
Q 018248 244 KGTVHVFGLKVDSG 257 (359)
Q Consensus 244 dg~i~iw~~~~~~~ 257 (359)
. .+.++|+++...
T Consensus 224 ~-~l~~~d~~~~~~ 236 (765)
T PF10214_consen 224 S-KLMLIDFESNWQ 236 (765)
T ss_pred C-ceEEEECCCCCc
Confidence 4 589999998763
No 482
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=80.28 E-value=7 Score=20.84 Aligned_cols=40 Identities=20% Similarity=0.246 Sum_probs=25.2
Q ss_pred cCCEEEEEecCCCCCCeEEEEECCCccEEeeeccCcceeEEEE
Q 018248 61 RSNIICLVNSGPHQSNKVMIWDDHENRYLGELSFRSEVKNVRL 103 (359)
Q Consensus 61 ~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~ 103 (359)
+++.++++.. .++.|.++|..+++.+..+........+.|
T Consensus 2 d~~~lyv~~~---~~~~v~~id~~~~~~~~~i~vg~~P~~i~~ 41 (42)
T TIGR02276 2 DGTKLYVTNS---GSNTVSVIDTATNKVIATIPVGGYPFGVAV 41 (42)
T ss_pred CCCEEEEEeC---CCCEEEEEECCCCeEEEEEECCCCCceEEe
Confidence 3444444332 358999999988888887774444444444
No 483
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=79.19 E-value=1.4 Score=41.55 Aligned_cols=130 Identities=11% Similarity=0.105 Sum_probs=71.0
Q ss_pred eecccccccEEEEccC-CcEEEEEeCCCCeEEEEEcC--CCcEEEEeecC---CCCcceEEEEecC---CCCEEEEEcCC
Q 018248 174 ITAHASRIASIAMTLD-GRFVATASSKGTLIRVFNTM--DGSLLQEMRRG---AERAEIYSLAFSS---NAQWLAASSDK 244 (359)
Q Consensus 174 ~~~~~~~i~~~~~s~~-~~~l~~~~~dg~~i~iwd~~--~~~~~~~~~~~---~~~~~i~~~~~s~---~~~~l~~~~~d 244 (359)
+++..+.+..+.|... ...+. -.-|. +.|||+. .|+....+..+ .....+.-+.|.| +.-++..+-.+
T Consensus 128 ~kgf~G~v~dl~fah~~~pk~~--~~vg~-lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~ 204 (1283)
T KOG1916|consen 128 AKGFPGGVGDLQFAHTKCPKGR--RLVGE-LFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKG 204 (1283)
T ss_pred HhcCCCCcccccccccCChHHH--HHhhh-hheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCC
Confidence 3555667777777421 11111 23355 7888865 35433332211 1223445555654 66677777788
Q ss_pred CcEEEEEccCCCCCCCCCccccCCCCCccCCCCCceeeeeEeeeecceEEecccceeEEeecCCcEEEeeecccCCEEEE
Q 018248 245 GTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSAISSFRFIRGVLPKYFSSKWSMAQFRLPENVQYLVGFGRQNNTIVI 324 (359)
Q Consensus 245 g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~ 324 (359)
+.+++.+.+..... +.+. ...|......+..+.+..-..||||..++.
T Consensus 205 ~~i~lL~~~ra~~~-------------------------------l~rs-Hs~~~~d~a~~~~g~~~l~~lSpDGtv~a~ 252 (1283)
T KOG1916|consen 205 GEIRLLNINRALRS-------------------------------LFRS-HSQRVTDMAFFAEGVLKLASLSPDGTVFAW 252 (1283)
T ss_pred CceeEeeechHHHH-------------------------------HHHh-cCCCcccHHHHhhchhhheeeCCCCcEEEE
Confidence 88888777654310 0000 001111111111233334458999999999
Q ss_pred EecCCeEEEEEeCC
Q 018248 325 VGLDGSYYKCEFDP 338 (359)
Q Consensus 325 ~~~dg~i~v~~~~~ 338 (359)
++.||.++.|.+-.
T Consensus 253 a~~dG~v~f~Qiyi 266 (1283)
T KOG1916|consen 253 AISDGSVGFYQIYI 266 (1283)
T ss_pred eecCCccceeeeee
Confidence 99999999988644
No 484
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=79.08 E-value=6.1 Score=19.76 Aligned_cols=25 Identities=24% Similarity=0.373 Sum_probs=19.5
Q ss_pred EEEEEeCCCCeEEEEEcCCCcEEEEe
Q 018248 192 FVATASSKGTLIRVFNTMDGSLLQEM 217 (359)
Q Consensus 192 ~l~~~~~dg~~i~iwd~~~~~~~~~~ 217 (359)
.++.++.+|. +..+|..+|+.+-++
T Consensus 8 ~v~~~~~~g~-l~a~d~~~G~~~W~~ 32 (33)
T smart00564 8 TVYVGSTDGT-LYALDAKTGEILWTY 32 (33)
T ss_pred EEEEEcCCCE-EEEEEcccCcEEEEc
Confidence 5667788888 999999888876543
No 485
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=78.33 E-value=0.36 Score=41.86 Aligned_cols=143 Identities=12% Similarity=0.099 Sum_probs=87.3
Q ss_pred eEEEEecceeEEE---ecCeEEEEEcccceeeeeEeccCCCceeeeeecCCCccEEEecCCCCeeEEEEecCCeeeEEee
Q 018248 99 KNVRLRRDRIVVV---LNQKVYVYNFTDLKLVDQIETVVNPTGLCDVSQNAGPMVMACPGLLKGQVRVEDYGTKKSKYIT 175 (359)
Q Consensus 99 ~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~v~~~~~~~~~~~~~~ 175 (359)
....|.+.+.-++ .+..+..||- .++.......... .-.++|..+++...++ ....+.+++|+.+.+..+.+.
T Consensus 38 i~~~w~~e~~nlavaca~tiv~~YD~-agq~~le~n~tg~-aldm~wDkegdvlavl--Aek~~piylwd~n~eytqqLE 113 (615)
T KOG2247|consen 38 IIHRWRPEGHNLAVACANTIVIYYDK-AGQVILELNPTGK-ALDMAWDKEGDVLAVL--AEKTGPIYLWDVNSEYTQQLE 113 (615)
T ss_pred ceeeEecCCCceehhhhhhHHHhhhh-hcceecccCCchh-Hhhhhhccccchhhhh--hhcCCCeeechhhhhhHHHHh
Confidence 3455666554444 6777778884 4444444332222 2234444445543333 446788999998875544443
Q ss_pred cc-cccccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcEEEEeecCCCCcceEEEEecCCCCEEEEEcCCCcEEE
Q 018248 176 AH-ASRIASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAFSSNAQWLAASSDKGTVHV 249 (359)
Q Consensus 176 ~~-~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i 249 (359)
.. ...-.-+.|++.+..++.+...|. +.|++..+.+.+... +.|...++++++.+.+..+ .++.|..+.+
T Consensus 114 ~gg~~s~sll~wsKg~~el~ig~~~gn-~viynhgtsR~iiv~--Gkh~RRgtq~av~lEd~vi-l~dcd~~L~v 184 (615)
T KOG2247|consen 114 SGGTSSKSLLAWSKGTPELVIGNNAGN-IVIYNHGTSRRIIVM--GKHQRRGTQIAVTLEDYVI-LCDCDNTLSV 184 (615)
T ss_pred ccCcchHHHHhhccCCccccccccccc-eEEEeccchhhhhhh--cccccceeEEEecccceee-ecCcHHHHHH
Confidence 21 122223789999999999999999 999997766554433 4377789999999877544 4455544433
No 486
>PF14157 YmzC: YmzC-like protein; PDB: 3KVP_E.
Probab=77.76 E-value=7.9 Score=23.10 Aligned_cols=29 Identities=21% Similarity=0.308 Sum_probs=21.8
Q ss_pred CCEEEEEecCCeEEEEEeCCCCCCceEEee
Q 018248 319 NNTIVIVGLDGSYYKCEFDPMKGGEMHQLE 348 (359)
Q Consensus 319 ~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~ 348 (359)
.+.++..+.+|.|+||++++++ +++.+.+
T Consensus 29 ~N~Fav~~e~~~iKIfkyd~~t-Nei~L~K 57 (63)
T PF14157_consen 29 HNHFAVVDEDGQIKIFKYDEDT-NEITLKK 57 (63)
T ss_dssp TTEEEEE-ETTEEEEEEEETTT-TEEEEEE
T ss_pred CCEEEEEecCCeEEEEEeCCCC-CeEEEEE
Confidence 4677888999999999999976 4565544
No 487
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=77.57 E-value=39 Score=27.92 Aligned_cols=185 Identities=11% Similarity=0.158 Sum_probs=98.1
Q ss_pred EEEEccCCCEEEEec-CCceEEEEcCCCcceeeeecccCCCCceeEEEEeccCCEEEEEecCCCCCCeEEEEECCCc---
Q 018248 11 HLALNQDHGCFATGT-ETGFRVYLSDPYKPIMRRDFDRNPRGGTQLVSMLFRSNIICLVNSGPHQSNKVMIWDDHEN--- 86 (359)
Q Consensus 11 ~~~~s~~g~~l~~~~-d~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~iwd~~~~--- 86 (359)
.+.++ +++...+. +..++|.|+.+........+- .-.+-.. .+.-++++..++. .|.-+.+.|+.+.
T Consensus 91 Dv~vs--e~yvyvad~ssGL~IvDIS~P~sP~~~~~l-nt~gyay--gv~vsGn~aYVad----lddgfLivdvsdpssP 161 (370)
T COG5276 91 DVRVS--EEYVYVADWSSGLRIVDISTPDSPTLIGFL-NTDGYAY--GVYVSGNYAYVAD----LDDGFLIVDVSDPSSP 161 (370)
T ss_pred eeEec--ccEEEEEcCCCceEEEeccCCCCcceeccc-cCCceEE--EEEecCCEEEEee----ccCcEEEEECCCCCCc
Confidence 34444 44666666 888999999866554333221 0112222 3344567666555 4567778887654
Q ss_pred cEEeeec-cCcceeEEEEecceeEEE-ecCeEEEEEccccee---eeeEeccCCCceeeeeecCCCccEEEecCCCCeeE
Q 018248 87 RYLGELS-FRSEVKNVRLRRDRIVVV-LNQKVYVYNFTDLKL---VDQIETVVNPTGLCDVSQNAGPMVMACPGLLKGQV 161 (359)
Q Consensus 87 ~~~~~~~-~~~~v~~~~~~~~~~~~~-~d~~i~i~d~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~v 161 (359)
+....+. ....-..++.+-+-.+++ .|+.+.+.|+..... +....... ..-..++.+++.+++. . ..|.+
T Consensus 162 ~lagrya~~~~d~~~v~ISGn~AYvA~~d~GL~ivDVSnp~sPvli~~~n~g~---g~~sv~vsdnr~y~vv-y-~egvl 236 (370)
T COG5276 162 QLAGRYALPGGDTHDVAISGNYAYVAWRDGGLTIVDVSNPHSPVLIGSYNTGP---GTYSVSVSDNRAYLVV-Y-DEGVL 236 (370)
T ss_pred eeeeeeccCCCCceeEEEecCeEEEEEeCCCeEEEEccCCCCCeEEEEEecCC---ceEEEEecCCeeEEEE-c-ccceE
Confidence 3344444 334457888888888888 999999999955432 22222211 2333444455555554 2 24433
Q ss_pred EEEecCCeeeEEe--ecccccccEEEEccCCcEEEEEeCCCCeEEEEEcCC
Q 018248 162 RVEDYGTKKSKYI--TAHASRIASIAMTLDGRFVATASSKGTLIRVFNTMD 210 (359)
Q Consensus 162 ~~~~~~~~~~~~~--~~~~~~i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~ 210 (359)
.++.........+ .....++..-.+.-.+++...+..+.. +.+-|+.+
T Consensus 237 ivd~s~~ssp~~~gsyet~~p~~~s~v~Vs~~~~Yvadga~g-l~~idisn 286 (370)
T COG5276 237 IVDVSGPSSPTVFGSYETSNPVSISTVPVSGEYAYVADGAKG-LPIIDISN 286 (370)
T ss_pred EEecCCCCCceEeeccccCCcccccceecccceeeeeccccC-ceeEeccC
Confidence 3333333322222 222222222123334556666665655 66777654
No 488
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=77.16 E-value=18 Score=23.77 Aligned_cols=38 Identities=16% Similarity=0.101 Sum_probs=26.1
Q ss_pred CCCeEEEEECCCccEEeeeccCcceeEEEEecceeEEE
Q 018248 74 QSNKVMIWDDHENRYLGELSFRSEVKNVRLRRDRIVVV 111 (359)
Q Consensus 74 ~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 111 (359)
.+|.+.-||+.+++....+..-.-.+.+++++|+..++
T Consensus 35 ~~GRll~ydp~t~~~~vl~~~L~fpNGVals~d~~~vl 72 (89)
T PF03088_consen 35 PTGRLLRYDPSTKETTVLLDGLYFPNGVALSPDESFVL 72 (89)
T ss_dssp --EEEEEEETTTTEEEEEEEEESSEEEEEE-TTSSEEE
T ss_pred CCcCEEEEECCCCeEEEehhCCCccCeEEEcCCCCEEE
Confidence 46889999988887655555344567889999887665
No 489
>PHA03098 kelch-like protein; Provisional
Probab=76.99 E-value=61 Score=29.81 Aligned_cols=24 Identities=13% Similarity=0.350 Sum_probs=16.0
Q ss_pred CCcEEEEEeCC-----CCeEEEEEcCCCcE
Q 018248 189 DGRFVATASSK-----GTLIRVFNTMDGSL 213 (359)
Q Consensus 189 ~~~~l~~~~~d-----g~~i~iwd~~~~~~ 213 (359)
+++.++.|+.+ .. |.+||..+.+-
T Consensus 487 ~~~iyv~GG~~~~~~~~~-v~~yd~~~~~W 515 (534)
T PHA03098 487 NNKIYVVGGDKYEYYINE-IEVYDDKTNTW 515 (534)
T ss_pred CCEEEEEcCCcCCcccce-eEEEeCCCCEE
Confidence 67777777654 35 78888776643
No 490
>PF09826 Beta_propel: Beta propeller domain; InterPro: IPR019198 This entry consists of predicted secreted proteins containing a C-terminal beta-propeller domain distantly related to WD-40 repeats.
Probab=75.64 E-value=66 Score=29.52 Aligned_cols=169 Identities=15% Similarity=0.203 Sum_probs=99.8
Q ss_pred CCCeEEEEECCCccEEeeec---cCcceeEEEEecceeEEE---ecCeEEEEEcccce---eeeeEeccCCCceeeeeec
Q 018248 74 QSNKVMIWDDHENRYLGELS---FRSEVKNVRLRRDRIVVV---LNQKVYVYNFTDLK---LVDQIETVVNPTGLCDVSQ 144 (359)
Q Consensus 74 ~d~~i~iwd~~~~~~~~~~~---~~~~v~~~~~~~~~~~~~---~d~~i~i~d~~~~~---~~~~~~~~~~~~~~~~~~~ 144 (359)
..+.|.+.| .+.+.+..+. ....|.+++|-.+.-+++ .-.-+.+.|+.+.+ .+-.++.+ -.+--++|
T Consensus 302 s~N~lyVLD-~~L~~vG~l~~la~gE~IysvRF~Gd~~Y~VTFrqvDPLfviDLsdP~~P~vlGeLKIP---GfS~YLHP 377 (521)
T PF09826_consen 302 SSNNLYVLD-EDLKIVGSLEGLAPGERIYSVRFMGDRAYLVTFRQVDPLFVIDLSDPANPKVLGELKIP---GFSDYLHP 377 (521)
T ss_pred ceEEEEEEC-CCCcEeEEccccCCCceEEEEEEeCCeEEEEEEeecCceEEEECCCCCCCceeeEEECc---cchhceeE
Confidence 457788888 6677777766 567899999999988888 55678899996644 44444432 23445677
Q ss_pred CCCccEEEecCCCCee---------EEE--EecCC----eeeEEeec-c-------cccccEEEEccCCcEEEEEeC---
Q 018248 145 NAGPMVMACPGLLKGQ---------VRV--EDYGT----KKSKYITA-H-------ASRIASIAMTLDGRFVATASS--- 198 (359)
Q Consensus 145 ~~~~~~l~~~g~~d~~---------v~~--~~~~~----~~~~~~~~-~-------~~~i~~~~~s~~~~~l~~~~~--- 198 (359)
-++..+|.. |..... +++ ++.+. +.+....- . ...-.++.|.+..++|+.--.
T Consensus 378 ~~e~~LlGi-G~~~~~~~~~~~~~GlKisLFDVSD~~~P~e~~~~~iG~~~s~S~a~~dhkAfl~~~~~~ll~~Pv~~~~ 456 (521)
T PF09826_consen 378 YDENHLLGI-GKDTDEDEGTGWTQGLKISLFDVSDPANPKELDKEVIGDRGSYSEALYDHKAFLFDKEKNLLAFPVSSSY 456 (521)
T ss_pred CCCCeEEEE-cccCcccccccccceeEEEEEecCCCCCccEeEEEEcCCCCccCccccCceEEEEeCCCCEEEEEEEEcc
Confidence 677767766 443322 555 55442 11111111 0 112346778887776654322
Q ss_pred -----CCCeEEEEEcCC-Cc--EEEEeecCCCCc-------ceEEEEecCCCCEEEEEcCCCcEEEEEccCC
Q 018248 199 -----KGTLIRVFNTMD-GS--LLQEMRRGAERA-------EIYSLAFSSNAQWLAASSDKGTVHVFGLKVD 255 (359)
Q Consensus 199 -----dg~~i~iwd~~~-~~--~~~~~~~~~~~~-------~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~ 255 (359)
.| +.++++.. .. ....+. |.. .+....+. +..|.+.+. +.|+++|+++-
T Consensus 457 ~~~~~~g--~~v~~i~~~~g~~~~g~i~---h~~~~~~~~~~~~R~lyi--~d~lYtvS~-~~i~~~~l~t~ 520 (521)
T PF09826_consen 457 GYFNFQG--AYVFSIDPEDGFTLKGKIT---HPSPDYYYSYQIQRSLYI--GDTLYTVSD-NGIKAYDLNTL 520 (521)
T ss_pred Cccccce--EEEEEEeCCCCeEEEEEEE---ccCcccccccceeEEEEE--CCEEEEEEC-CEEEEEehHhc
Confidence 33 77887762 22 223333 222 25555554 446777664 45999998763
No 491
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=75.40 E-value=54 Score=28.45 Aligned_cols=146 Identities=20% Similarity=0.326 Sum_probs=81.5
Q ss_pred CCCeeEEEEecCCeeeEEeecccccccEEEEc----cCCcE--EEEEe-CC---CCeEEEEEcC--CCcEEEEeecCC--
Q 018248 156 LLKGQVRVEDYGTKKSKYITAHASRIASIAMT----LDGRF--VATAS-SK---GTLIRVFNTM--DGSLLQEMRRGA-- 221 (359)
Q Consensus 156 ~~d~~v~~~~~~~~~~~~~~~~~~~i~~~~~s----~~~~~--l~~~~-~d---g~~i~iwd~~--~~~~~~~~~~~~-- 221 (359)
..++-+.+++++++.++.+.. +.++.+..- -+|+. |+.++ .+ .. |++|.+. ++ .+..+....
T Consensus 75 dK~~GL~VYdL~Gk~lq~~~~--Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~-l~~f~id~~~g-~L~~v~~~~~p 150 (381)
T PF02333_consen 75 DKKGGLYVYDLDGKELQSLPV--GRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNS-LRLFRIDPDTG-ELTDVTDPAAP 150 (381)
T ss_dssp ETTTEEEEEETTS-EEEEE-S--S-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-E-EEEEEEETTTT-EEEE-CBTTC-
T ss_pred eCCCCEEEEcCCCcEEEeecC--CCcceeeeecceecCCceEEEEEEecCcCCCCe-EEEEEecCCCC-cceEcCCCCcc
Confidence 356778999999999888752 344444332 23442 44444 32 45 9999775 33 333332110
Q ss_pred ---CCcceEEEEe--cC-CCC-EEEEEcCCCcEEEEEccCCCCCCCCCccccCCCCCccCCCCCceeeeeEeeeecceEE
Q 018248 222 ---ERAEIYSLAF--SS-NAQ-WLAASSDKGTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSAISSFRFIRGVLPKYF 294 (359)
Q Consensus 222 ---~~~~i~~~~~--s~-~~~-~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (359)
....++.+++ +| +|+ +.+....+|.+.-|.+....... +...+
T Consensus 151 ~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~--------------------------v~~~l---- 200 (381)
T PF02333_consen 151 IATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGK--------------------------VSATL---- 200 (381)
T ss_dssp EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSS--------------------------EEEEE----
T ss_pred cccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCc--------------------------EeeEE----
Confidence 1234677776 33 455 55667788999999987533110 00001
Q ss_pred ecccceeEEeecCCcEEEeeecccCCEEEEEecCCeEEEEEeCCCCC
Q 018248 295 SSKWSMAQFRLPENVQYLVGFGRQNNTIVIVGLDGSYYKCEFDPMKG 341 (359)
Q Consensus 295 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~ 341 (359)
..+|.++ +.+-.|+......+|+.+-++--|+.|..+++.+
T Consensus 201 -----VR~f~~~-sQ~EGCVVDDe~g~LYvgEE~~GIW~y~Aep~~~ 241 (381)
T PF02333_consen 201 -----VREFKVG-SQPEGCVVDDETGRLYVGEEDVGIWRYDAEPEGG 241 (381)
T ss_dssp -----EEEEE-S-S-EEEEEEETTTTEEEEEETTTEEEEEESSCCC-
T ss_pred -----EEEecCC-CcceEEEEecccCCEEEecCccEEEEEecCCCCC
Confidence 1123333 3677888888889999999998888888877654
No 492
>KOG3611 consensus Semaphorins [Signal transduction mechanisms]
Probab=75.24 E-value=48 Score=31.70 Aligned_cols=72 Identities=29% Similarity=0.407 Sum_probs=48.4
Q ss_pred cccccEEEEc----cCCc--EEEEEeCCCCeEEEEEcCCCc-----EEEEeecCCCCcceEEEEecCCCCEEEEEcCCCc
Q 018248 178 ASRIASIAMT----LDGR--FVATASSKGTLIRVFNTMDGS-----LLQEMRRGAERAEIYSLAFSSNAQWLAASSDKGT 246 (359)
Q Consensus 178 ~~~i~~~~~s----~~~~--~l~~~~~dg~~i~iwd~~~~~-----~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~ 246 (359)
....+.|+.. +++. .|..|+++|+.+++-.+.... .+.++..-.+..+|..|.+++..+.|++|+..|-
T Consensus 407 ~~~~t~I~Vd~~~~~~~~ydVlflGTd~G~vlKvV~~~~~~~~~~~llEElqvf~~~~pI~~m~Ls~~~~~LyVgs~~gV 486 (737)
T KOG3611|consen 407 DYRLTQIVVDRVAGLDGNYDVLFLGTDAGTVLKVVSPGKESGKSNVLLEELQVFPDAEPIRSMQLSSKRGSLYVGSRSGV 486 (737)
T ss_pred cceEEEEEEEEecCCCCcEEEEEEecCCCeEEEEEecCCccCccceeEEEEeecCCCCceeEEEecccCCeEEEEccCcE
Confidence 5556666665 4454 577899999855565554411 3444444335578999999998888888888875
Q ss_pred EEE
Q 018248 247 VHV 249 (359)
Q Consensus 247 i~i 249 (359)
++|
T Consensus 487 ~qv 489 (737)
T KOG3611|consen 487 VQV 489 (737)
T ss_pred EEe
Confidence 554
No 493
>TIGR02608 delta_60_rpt delta-60 repeat domain. This domain occurs in tandem repeats, as many as 13, in proteins from Bdellovibrio bacteriovorus, Azotobacter vinelandii, Geobacter sulfurreducens, Pirellula sp. 1, Myxococcus xanthus, and others, many of which are Deltaproteobacteria. The periodicity of the repeat ranges from about 57 to 61 amino acids, and a core region of about 54 is represented by this model and seed alignment.
Probab=75.09 E-value=13 Score=21.80 Aligned_cols=30 Identities=10% Similarity=0.202 Sum_probs=22.4
Q ss_pred EEEeeecccCCEEEEEec-----CCeEEEEEeCCC
Q 018248 310 QYLVGFGRQNNTIVIVGL-----DGSYYKCEFDPM 339 (359)
Q Consensus 310 v~~~~~s~~~~~l~~~~~-----dg~i~v~~~~~~ 339 (359)
..+++.-|||+.|++|.. +....+.++.++
T Consensus 3 ~~~~~~q~DGkIlv~G~~~~~~~~~~~~l~Rln~D 37 (55)
T TIGR02608 3 AYAVAVQSDGKILVAGYVDNSSGNNDFVLARLNAD 37 (55)
T ss_pred eEEEEECCCCcEEEEEEeecCCCcccEEEEEECCC
Confidence 467888999999999963 445667777764
No 494
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=74.33 E-value=8.3 Score=35.94 Aligned_cols=99 Identities=12% Similarity=0.063 Sum_probs=0.0
Q ss_pred cCCCcEEEEeecCCCCcceEEEEecCCCCEEEEEcCCCcEEEEEccCCCCCCCCCccccCCCCCccCCCCCceeeeeEee
Q 018248 208 TMDGSLLQEMRRGAERAEIYSLAFSSNAQWLAASSDKGTVHVFGLKVDSGSPGTSKLHSASEPNLSSKNSSAISSFRFIR 287 (359)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (359)
+++..+....+ ....++++.-+|.|+.++.+..||.|++|+.....
T Consensus 2 ikt~~~s~~~k---~~e~~~aiqshp~~~s~v~~~~d~si~lfn~~~r~------------------------------- 47 (1636)
T KOG3616|consen 2 IKTFDCSRDPK---EDEFTTAIQSHPGGQSFVLAHQDGSIILFNFIPRR------------------------------- 47 (1636)
T ss_pred CccccccCCcc---ccceeeeeeecCCCceEEEEecCCcEEEEeecccc-------------------------------
Q ss_pred eecceEEecccceeEEeecCCcEEEeeecccCCEEEEEecCCeEEEEEeCCCCCCceEEeeeccccCCCCCC
Q 018248 288 GVLPKYFSSKWSMAQFRLPENVQYLVGFGRQNNTIVIVGLDGSYYKCEFDPMKGGEMHQLEHYKFLKPEEPF 359 (359)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (359)
.++.+... -+...+.|... -|+++++|..+.-|.-+- +++.++.---+.+++|
T Consensus 48 --qski~~~~----------~p~~nlv~tnh--gl~~~tsdrr~la~~~dg-----vvqqqfdyndqsekef 100 (1636)
T KOG3616|consen 48 --QSKICEEA----------KPKENLVFTNH--GLVTATSDRRALAWKEDG-----VVQQQFDYNDQSEKEF 100 (1636)
T ss_pred --hhhhhhhc----------CCccceeeecc--ceEEEeccchhheeeccC-----cchhhccccchhhhhc
No 495
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=74.19 E-value=49 Score=27.39 Aligned_cols=88 Identities=11% Similarity=0.242 Sum_probs=50.9
Q ss_pred CCeEEEEECCCccEEeeec-cCcceeEEEEecceeEEE-----e----cCeEEEEEcccceeeeeEec-----cCCCcee
Q 018248 75 SNKVMIWDDHENRYLGELS-FRSEVKNVRLRRDRIVVV-----L----NQKVYVYNFTDLKLVDQIET-----VVNPTGL 139 (359)
Q Consensus 75 d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~-----~----d~~i~i~d~~~~~~~~~~~~-----~~~~~~~ 139 (359)
-..|++||..+.+...--. ..+.|.++.|..+.++++ . ...+..||+.+.. ...+.. -.+++..
T Consensus 15 C~~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~-w~~~~~~~s~~ipgpv~a 93 (281)
T PF12768_consen 15 CPGLCLYDTDNSQWSSPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQT-WSSLGGGSSNSIPGPVTA 93 (281)
T ss_pred CCEEEEEECCCCEeecCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCe-eeecCCcccccCCCcEEE
Confidence 3679999987776655444 678899999986666665 1 3467888886543 223332 1245555
Q ss_pred eeeecCCCccEEEecCCCCeeEEE
Q 018248 140 CDVSQNAGPMVMACPGLLKGQVRV 163 (359)
Q Consensus 140 ~~~~~~~~~~~l~~~g~~d~~v~~ 163 (359)
+.+.......+.+.....++...+
T Consensus 94 ~~~~~~d~~~~~~aG~~~~g~~~l 117 (281)
T PF12768_consen 94 LTFISNDGSNFWVAGRSANGSTFL 117 (281)
T ss_pred EEeeccCCceEEEeceecCCCceE
Confidence 554433332233332224555555
No 496
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=73.73 E-value=46 Score=26.84 Aligned_cols=135 Identities=9% Similarity=0.046 Sum_probs=0.0
Q ss_pred EEEcccceeeeeEeccCCCceeeeeecCCCccEEEecCCCCee--EEEEecCC-------eeeEEeecccccccEEEEcc
Q 018248 118 VYNFTDLKLVDQIETVVNPTGLCDVSQNAGPMVMACPGLLKGQ--VRVEDYGT-------KKSKYITAHASRIASIAMTL 188 (359)
Q Consensus 118 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d~~--v~~~~~~~-------~~~~~~~~~~~~i~~~~~s~ 188 (359)
+||+.+++....--........-.+-+++.. +.+.|..+|. ++++.... ......-....+-.++..-|
T Consensus 50 ~yD~~tn~~rpl~v~td~FCSgg~~L~dG~l--l~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~L~ 127 (243)
T PF07250_consen 50 EYDPNTNTFRPLTVQTDTFCSGGAFLPDGRL--LQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATTLP 127 (243)
T ss_pred EEecCCCcEEeccCCCCCcccCcCCCCCCCE--EEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccceECC
Q ss_pred CCcEEEEEeCCCCeEEEEEcCCC-------cEEEEeecCCCCcceEEEEecCCCCEEEEEcCCCcEEEEEccCCC
Q 018248 189 DGRFVATASSKGTLIRVFNTMDG-------SLLQEMRRGAERAEIYSLAFSSNAQWLAASSDKGTVHVFGLKVDS 256 (359)
Q Consensus 189 ~~~~l~~~~~dg~~i~iwd~~~~-------~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~ 256 (359)
||+.|+.|+.......+|.-... ..+...........--.+...|||++++.+..+. .|||..+.+
T Consensus 128 DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~s--~i~d~~~n~ 200 (243)
T PF07250_consen 128 DGRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRGS--IIYDYKTNT 200 (243)
T ss_pred CCCEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCCc--EEEeCCCCe
No 497
>COG4247 Phy 3-phytase (myo-inositol-hexaphosphate 3-phosphohydrolase) [Lipid metabolism]
Probab=73.32 E-value=47 Score=26.79 Aligned_cols=70 Identities=24% Similarity=0.358 Sum_probs=43.1
Q ss_pred ccEEEEccCCcEEEEEeCCCCeEEEEEcCCCcEEEEeecCCCCcceEEEEe----cCCCCE--EEEEcC--CCcEEEEEc
Q 018248 181 IASIAMTLDGRFVATASSKGTLIRVFNTMDGSLLQEMRRGAERAEIYSLAF----SSNAQW--LAASSD--KGTVHVFGL 252 (359)
Q Consensus 181 i~~~~~s~~~~~l~~~~~dg~~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~----s~~~~~--l~~~~~--dg~i~iw~~ 252 (359)
|+--.-+|+...+++....+. +++||+ +|+.++.+..+ ..+.+.+ --.|+. |+.++. ...|.+|.+
T Consensus 58 IwVh~t~P~kS~vItt~Kk~G-l~VYDL-sGkqLqs~~~G----k~NNVDLrygF~LgG~~idiaaASdR~~~~i~~y~I 131 (364)
T COG4247 58 IWVHATNPDKSLVITTVKKAG-LRVYDL-SGKQLQSVNPG----KYNNVDLRYGFQLGGQSIDIAAASDRQNDKIVFYKI 131 (364)
T ss_pred eEeccCCcCcceEEEeeccCC-eEEEec-CCCeeeecCCC----cccccccccCcccCCeEEEEEecccccCCeEEEEEe
Confidence 333344678788888888888 999997 67777776543 3333332 223442 444443 346888888
Q ss_pred cCCC
Q 018248 253 KVDS 256 (359)
Q Consensus 253 ~~~~ 256 (359)
+...
T Consensus 132 dp~~ 135 (364)
T COG4247 132 DPNP 135 (364)
T ss_pred CCCc
Confidence 7654
No 498
>PF09826 Beta_propel: Beta propeller domain; InterPro: IPR019198 This entry consists of predicted secreted proteins containing a C-terminal beta-propeller domain distantly related to WD-40 repeats.
Probab=72.21 E-value=80 Score=28.97 Aligned_cols=52 Identities=17% Similarity=0.246 Sum_probs=32.9
Q ss_pred cCCcEEEeeecccCCEEEEEecCCeEEEEEeCCCC----CCceEEeeeccccCCCC
Q 018248 306 PENVQYLVGFGRQNNTIVIVGLDGSYYKCEFDPMK----GGEMHQLEHYKFLKPEE 357 (359)
Q Consensus 306 ~~~~v~~~~~s~~~~~l~~~~~dg~i~v~~~~~~~----~~~~~~~~~~~~~~~~~ 357 (359)
+.+.|.++.|--|--++++==.=--+++.++..-+ -|++.-.-|.+||-+..
T Consensus 324 ~gE~IysvRF~Gd~~Y~VTFrqvDPLfviDLsdP~~P~vlGeLKIPGfS~YLHP~~ 379 (521)
T PF09826_consen 324 PGERIYSVRFMGDRAYLVTFRQVDPLFVIDLSDPANPKVLGELKIPGFSDYLHPYD 379 (521)
T ss_pred CCceEEEEEEeCCeEEEEEEeecCceEEEECCCCCCCceeeEEECccchhceeECC
Confidence 44678889998876666665553346666665332 25555556777776643
No 499
>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides. The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity
Probab=72.20 E-value=8.6 Score=25.04 Aligned_cols=27 Identities=15% Similarity=0.300 Sum_probs=22.1
Q ss_pred eEEEEEccCCCEEEEec--CCceEEEEcC
Q 018248 9 IHHLALNQDHGCFATGT--ETGFRVYLSD 35 (359)
Q Consensus 9 v~~~~~s~~g~~l~~~~--d~~i~iw~~~ 35 (359)
-+.|.++|++++|.+++ .+.|++|+..
T Consensus 56 aNGI~~s~~~k~lyVa~~~~~~I~vy~~~ 84 (86)
T PF01731_consen 56 ANGIAISPDKKYLYVASSLAHSIHVYKRH 84 (86)
T ss_pred CceEEEcCCCCEEEEEeccCCeEEEEEec
Confidence 35788999999997777 7889999865
No 500
>TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171. This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown.
Probab=71.48 E-value=36 Score=33.02 Aligned_cols=87 Identities=13% Similarity=0.069 Sum_probs=57.6
Q ss_pred EEEEEecCCCCCCeEEEEECCCccEEee-eccCcceeEEEEecceeEEE-----e----cCeEEEEEccc-ceeeeeEec
Q 018248 64 IICLVNSGPHQSNKVMIWDDHENRYLGE-LSFRSEVKNVRLRRDRIVVV-----L----NQKVYVYNFTD-LKLVDQIET 132 (359)
Q Consensus 64 ~~~~~~~~~~~d~~i~iwd~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~-----~----d~~i~i~d~~~-~~~~~~~~~ 132 (359)
.++++.. ..+.|.+-|......... ++...+|.+-+|+|||+.++ . ...|++-|+.+ +..+..+..
T Consensus 320 kiAfv~~---~~~~L~~~D~dG~n~~~ve~~~~~~i~sP~~SPDG~~vAY~ts~e~~~g~s~vYv~~L~t~~~~~vkl~v 396 (912)
T TIGR02171 320 KLAFRND---VTGNLAYIDYTKGASRAVEIEDTISVYHPDISPDGKKVAFCTGIEGLPGKSSVYVRNLNASGSGLVKLPV 396 (912)
T ss_pred eEEEEEc---CCCeEEEEecCCCCceEEEecCCCceecCcCCCCCCEEEEEEeecCCCCCceEEEEehhccCCCceEeec
Confidence 4555552 125888889776555544 67888999999999999887 1 23588888854 334445555
Q ss_pred cCCCceeeeeecCCCccEEEe
Q 018248 133 VVNPTGLCDVSQNAGPMVMAC 153 (359)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~l~~ 153 (359)
....|....+..+++..++.+
T Consensus 397 e~aaiprwrv~e~gdt~ivyv 417 (912)
T TIGR02171 397 ENAAIPRWRVLENGDTVIVYV 417 (912)
T ss_pred ccccccceEecCCCCeEEEEE
Confidence 555566666667777655444
Done!