BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 018249
(359 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1GQ8|A Chain A, Pectin Methylesterase From Carrot
Length = 319
Score = 152 bits (385), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 105/319 (32%), Positives = 151/319 (47%), Gaps = 32/319 (10%)
Query: 53 VGHRVITVDVNGSGEFKSVQAAVDSVPERNRMNVLIQISAGCYIEKVTVPVSKPYITFQG 112
VG V+ V +GSG++K+V AV + PE ++ +I+I AG Y E V VP K I F G
Sbjct: 5 VGPNVV-VAADGSGDYKTVSEAVAAAPEDSKTRYVIRIKAGVYRENVDVPKKKKNIMFLG 63
Query: 113 AGRDRTVIEWHDRACDRGANGQQLRTYQTASVTVFANYFSARNISFKNTAPAPLPGMQGW 172
GR T+I D T+ +A+V F AR+I+F+NTA G
Sbjct: 64 DGRTSTIITASKNVQDGST------TFNSATVAAVGAGFLARDITFQNTA-----GAAKH 112
Query: 173 QAAAFRISGDKAYFSGCGFYGAQDTLCDDAGRHYFKECYIEGSIDFIFGNGRSMYKDCEL 232
QA A R+ D + F C QD+L + R +F C+I G++DFIFGN + +DC++
Sbjct: 113 QAVALRVGSDLSAFYRCDILAYQDSLYVHSNRQFFINCFIAGTVDFIFGNAAVVLQDCDI 172
Query: 233 HSIATRFGS-----IAAHDRKSPDEKTGFAFVRCRVTGTG---------PLYVGRAMGQY 278
H A R GS + A R P++ TG + R+ T P Y+GR +Y
Sbjct: 173 H--ARRPGSGQKNMVTAQGRTDPNQNTGIVIQKSRIGATSDLQPVQSSFPTYLGRPWKEY 230
Query: 279 SRIVYSFTYFDDLVAHGGWDDWDHISNKNKTAFFGVYKCWGPGAANVRGASW---ARELD 335
SR V + +++ GW WD + T ++G Y+ G GAA +W
Sbjct: 231 SRTVVMQSSITNVINPAGWFPWDG-NFALDTLYYGEYQNTGAGAATSGRVTWKGFKVITS 289
Query: 336 YESAHPFLVKSFINGRHWI 354
A F SFI G W+
Sbjct: 290 STEAQGFTPGSFIAGGSWL 308
>pdb|1XG2|A Chain A, Crystal Structure Of The Complex Between Pectin
Methylesterase And Its Inhibitor Protein
Length = 317
Score = 127 bits (319), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 84/309 (27%), Positives = 141/309 (45%), Gaps = 31/309 (10%)
Query: 63 NGSGEFKSVQAAVDSVPERNRMNVLIQISAGCYIEKVTVPVSKPYITFQGAGRDRTVIEW 122
+G+G+++++ AV + P++++ +I + G Y E V V +K + G G T I
Sbjct: 10 DGTGDYQTLAEAVAAAPDKSKTRYVIYVKRGTYKENVEVASNKMNLMIVGDGMYATTITG 69
Query: 123 HDRACDRGANGQQLRTYQTASVTVFANYFSARNISFKNTAPAPLPGMQGWQAAAFRISGD 182
D T+++A++ F ++I +NTA G QA A R+ D
Sbjct: 70 SLNVVDGST------TFRSATLAAVGQGFILQDICIQNTA-----GPAKDQAVALRVGAD 118
Query: 183 KAYFSGCGFYGAQDTLCDDAGRHYFKECYIEGSIDFIFGNGRSMYKDCELHSIATRFGS- 241
+ + C QDTL + R ++++ Y+ G++DFIFGN +++ C+L +A + G
Sbjct: 119 MSVINRCRIDAYQDTLYAHSQRQFYRDSYVTGTVDFIFGNAAVVFQKCQL--VARKPGKY 176
Query: 242 ----IAAHDRKSPDEKTGFAFVRCRVTGTG---------PLYVGRAMGQYSRIVYSFTYF 288
+ A R P++ TG + C + + P Y+GR +YSR V +Y
Sbjct: 177 QQNMVTAQGRTDPNQATGTSIQFCNIIASSDLEPVLKEFPTYLGRPWKEYSRTVVMESYL 236
Query: 289 DDLVAHGGWDDWDHISNKNKTAFFGVYKCWGPGAANVRGASWARE---LDYESAHPFLVK 345
L+ GW +WD KT ++G + GPGA + W D A PF V
Sbjct: 237 GGLINPAGWAEWDG-DFALKTLYYGEFMNNGPGAGTSKRVKWPGYHVITDPAKAMPFTVA 295
Query: 346 SFINGRHWI 354
I G W+
Sbjct: 296 KLIQGGSWL 304
>pdb|3UW0|A Chain A, Pectin Methylesterase From Yersinia Enterocolitica
Length = 364
Score = 87.8 bits (216), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 93/328 (28%), Positives = 143/328 (43%), Gaps = 66/328 (20%)
Query: 67 EFKSVQAAVDSVPERNRMNVLIQISAGCYIEKVTVPVSKPYITFQGAGRDRTVIEWHDRA 126
EF S+ AA+ S P ++ +I + G Y E++ V ++ ++T +G RD TVI + A
Sbjct: 43 EFSSINAALKSAP-KDDTPFIIFLKNGVYTERLEV--ARSHVTLKGENRDGTVIGANTAA 99
Query: 127 CDRGANGQQLRTYQTASVTVFANYFSARNISFKN------------TAPAPLPGMQGWQA 174
G++ T +++V V A F+A N++ +N T P L + QA
Sbjct: 100 GMLNPQGEKWGTSGSSTVLVNAPNFTAENLTIRNDFDFPANKKKADTDPTKL---KDTQA 156
Query: 175 AAFRIS--GDKAYFSGCGFYGAQDTLCDDAG-RHYFKECYIEGSIDFIFGNGRSMYKDCE 231
A ++ DKA F G QDTL G R YF +C I G +DFIFG+G +++ +C
Sbjct: 157 VALLLAENSDKARFKAVKLEGYQDTLYSKTGSRSYFSDCEISGHVDFIFGSGITVFDNCN 216
Query: 232 L-----HSIATRFGSIAAHDRKSPDEKTGFAFVRCRVTG-----TGPLYVGR-------- 273
+ I +G I A + G F+ R+T +GR
Sbjct: 217 IVARDRSDIEPPYGYITAPSTLT-TSPYGLIFINSRLTKEPGVPANSFALGRPWHPTTTF 275
Query: 274 AMGQYS------RIVYSFTYFDDLVAHGGWDDWDHISNKNK-----------TAFFGVYK 316
A G+Y+ + V+ T DD + +G WD +S K+K + FF
Sbjct: 276 ADGRYADPAAIGQSVFINTTMDDHI-YG----WDKMSGKDKQGEKIWFYPQDSRFFEA-N 329
Query: 317 CWGPGAANVRGASWARELDYESAHPFLV 344
GPGAA G R+L E F +
Sbjct: 330 SQGPGAAINEG---RRQLSAEQLKAFTL 354
>pdb|1QJV|A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi
pdb|1QJV|B Chain B, Pectin Methylesterase Pema From Erwinia Chrysanthemi
Length = 342
Score = 81.3 bits (199), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 54/178 (30%), Positives = 95/178 (53%), Gaps = 14/178 (7%)
Query: 68 FKSVQAAVDSVPERNRMNVLIQISAGCYIEKVTVPVSKPYITFQGAGRDRTVIEWHDRAC 127
FK++ A+ S P + V++ I G Y E++T+ ++ + +G R+ VI A
Sbjct: 18 FKTIADAIASAPAGSTPFVIL-IKNGVYNERLTI--TRNNLHLKGESRNGAVIAAATAAG 74
Query: 128 DRGANGQQLRTYQTASVTVFANYFSARNISFKNTAPAPL---------PGMQGWQAAAFR 178
++G + T ++++T+ A FSA++++ +N P ++ QA A
Sbjct: 75 TLKSDGSKWGTAGSSTITISAKDFSAQSLTIRNDFDFPANQAKSDSDSSKIKDTQAVALY 134
Query: 179 I--SGDKAYFSGCGFYGAQDTLCDDAGRHYFKECYIEGSIDFIFGNGRSMYKDCELHS 234
+ SGD+AYF G QDTL GR +F +C I G++DFIFG+G +++ +C+L S
Sbjct: 135 VTKSGDRAYFKDVSLVGYQDTLYVSGGRSFFSDCRISGTVDFIFGDGTALFNNCDLVS 192
>pdb|2NTB|A Chain A, Crystal Structure Of Pectin Methylesterase In Complex With
Hexasaccharide V
pdb|2NTB|B Chain B, Crystal Structure Of Pectin Methylesterase In Complex With
Hexasaccharide V
pdb|2NTP|A Chain A, Crystal Structure Of Pectin Methylesterase In Complex With
Hexasaccharide Vi
pdb|2NTP|B Chain B, Crystal Structure Of Pectin Methylesterase In Complex With
Hexasaccharide Vi
pdb|2NTQ|A Chain A, Crystal Structure Of Pectin Methylesterase In Complex With
Hexasaccharide Vii
pdb|2NTQ|B Chain B, Crystal Structure Of Pectin Methylesterase In Complex With
Hexasaccharide Vii
Length = 342
Score = 81.3 bits (199), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 54/178 (30%), Positives = 95/178 (53%), Gaps = 14/178 (7%)
Query: 68 FKSVQAAVDSVPERNRMNVLIQISAGCYIEKVTVPVSKPYITFQGAGRDRTVIEWHDRAC 127
FK++ A+ S P + V++ I G Y E++T+ ++ + +G R+ VI A
Sbjct: 18 FKTIADAIASAPAGSTPFVIL-IKNGVYNERLTI--TRNNLHLKGESRNGAVIAAATAAG 74
Query: 128 DRGANGQQLRTYQTASVTVFANYFSARNISFKNTAPAPL---------PGMQGWQAAAFR 178
++G + T ++++T+ A FSA++++ +N P ++ QA A
Sbjct: 75 TLKSDGSKWGTAGSSTITISAKDFSAQSLTIRNDFDFPANQAKSDSDSSKIKDTQAVALY 134
Query: 179 I--SGDKAYFSGCGFYGAQDTLCDDAGRHYFKECYIEGSIDFIFGNGRSMYKDCELHS 234
+ SGD+AYF G QDTL GR +F +C I G++DFIFG+G +++ +C+L S
Sbjct: 135 VTKSGDRAYFKDVSLVGYQDTLYVSGGRSFFSDCRISGTVDFIFGDGTALFNNCDLVS 192
>pdb|2NSP|A Chain A, Crystal Structure Of Pectin Methylesterase D178a Mutant In
Complex With Hexasaccharide I
pdb|2NSP|B Chain B, Crystal Structure Of Pectin Methylesterase D178a Mutant In
Complex With Hexasaccharide I
pdb|2NST|A Chain A, Crystal Structure Of Pectin Methylesterase D178a Mutant In
Complex With Hexasaccharide Ii
pdb|2NST|B Chain B, Crystal Structure Of Pectin Methylesterase D178a Mutant In
Complex With Hexasaccharide Ii
pdb|2NT6|A Chain A, Crystal Structure Of Pectin Methylesterase D178a Mutant In
Complex With Hexasaccharide Iii
pdb|2NT6|B Chain B, Crystal Structure Of Pectin Methylesterase D178a Mutant In
Complex With Hexasaccharide Iii
pdb|2NT9|A Chain A, Crystal Structure Of Pectin Methylesterase D178a Mutant In
Complex With Hexasaccharide Iv
pdb|2NT9|B Chain B, Crystal Structure Of Pectin Methylesterase D178a Mutant In
Complex With Hexasaccharide Iv
Length = 342
Score = 78.2 bits (191), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 53/178 (29%), Positives = 94/178 (52%), Gaps = 14/178 (7%)
Query: 68 FKSVQAAVDSVPERNRMNVLIQISAGCYIEKVTVPVSKPYITFQGAGRDRTVIEWHDRAC 127
FK++ A+ S P + V++ I G Y E++T+ ++ + +G R+ VI A
Sbjct: 18 FKTIADAIASAPAGSTPFVIL-IKNGVYNERLTI--TRNNLHLKGESRNGAVIAAATAAG 74
Query: 128 DRGANGQQLRTYQTASVTVFANYFSARNISFKNTAPAPL---------PGMQGWQAAAFR 178
++G + T ++++T+ A FSA++++ +N P ++ QA A
Sbjct: 75 TLKSDGSKWGTAGSSTITISAKDFSAQSLTIRNDFDFPANQAKSDSDSSKIKDTQAVALY 134
Query: 179 I--SGDKAYFSGCGFYGAQDTLCDDAGRHYFKECYIEGSIDFIFGNGRSMYKDCELHS 234
+ SGD+AYF G Q TL GR +F +C I G++DFIFG+G +++ +C+L S
Sbjct: 135 VTKSGDRAYFKDVSLVGYQATLYVSGGRSFFSDCRISGTVDFIFGDGTALFNNCDLVS 192
>pdb|3GRH|A Chain A, Crystal Structure Of Escherichia Coli Ybhc
Length = 422
Score = 36.6 bits (83), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 48/232 (20%), Positives = 82/232 (35%), Gaps = 52/232 (22%)
Query: 50 IGPVGHRVITVDVNGSGEFKSVQAAVDS-VPERNRMNVLIQISAGCYIEKVTVPVSKPYI 108
+GP G + +T ++QAAVD+ + +R I + G Y V VP + I
Sbjct: 79 VGPAGTQGVT--------HTTIQAAVDAAIIKRTNKRQYIAVMPGEYQGTVYVPAAPGGI 130
Query: 109 TFQGAGRDRTVI-------------EWHDRACDRGA--NGQ-------QLRTYQTASVTV 146
T G G + +W RG G+ ++ ++ S+ V
Sbjct: 131 TLYGTGEKPIDVKIGLSLDGGMSPADWRHDVNPRGKYMPGKPAWYMYDSCQSKRSDSIGV 190
Query: 147 FA--------NYFSARNISFKNTAPAPLPGMQGWQAAAFRISGDKAYFSGCGFYGAQDTL 198
N +N++ +NT + A A R GD+ + G Q+T
Sbjct: 191 LCSAVFWSQNNGLQLQNLTIENTLGDSVDAGN-HPAVALRTDGDQVQINNVNILGRQNTF 249
Query: 199 ------------CDDAGRHYFKECYIEGSIDFIFGNGRSMYKDCELHSIATR 238
+ R YIEG +D + G G ++ + E + +R
Sbjct: 250 FVTNSGVQNRLETNRQPRTLVTNSYIEGDVDIVSGRGAVVFDNTEFRVVNSR 301
>pdb|2WYR|A Chain A, 3-D Structure Of Phtet1-12s, Dodecamer In The Asymmetric
Unit
pdb|2WYR|B Chain B, 3-D Structure Of Phtet1-12s, Dodecamer In The Asymmetric
Unit
pdb|2WYR|C Chain C, 3-D Structure Of Phtet1-12s, Dodecamer In The Asymmetric
Unit
pdb|2WYR|D Chain D, 3-D Structure Of Phtet1-12s, Dodecamer In The Asymmetric
Unit
pdb|2WYR|E Chain E, 3-D Structure Of Phtet1-12s, Dodecamer In The Asymmetric
Unit
pdb|2WYR|F Chain F, 3-D Structure Of Phtet1-12s, Dodecamer In The Asymmetric
Unit
pdb|2WYR|G Chain G, 3-D Structure Of Phtet1-12s, Dodecamer In The Asymmetric
Unit
pdb|2WYR|H Chain H, 3-D Structure Of Phtet1-12s, Dodecamer In The Asymmetric
Unit
pdb|2WYR|I Chain I, 3-D Structure Of Phtet1-12s, Dodecamer In The Asymmetric
Unit
pdb|2WYR|J Chain J, 3-D Structure Of Phtet1-12s, Dodecamer In The Asymmetric
Unit
pdb|2WYR|K Chain K, 3-D Structure Of Phtet1-12s, Dodecamer In The Asymmetric
Unit
pdb|2WYR|L Chain L, 3-D Structure Of Phtet1-12s, Dodecamer In The Asymmetric
Unit
Length = 332
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 32/64 (50%), Gaps = 5/64 (7%)
Query: 100 TVPVSKPYITFQGAGRDRTVIEWHDRACDRGANGQQ--LRTYQTASVTVFANYFSARNIS 157
+ + P+++ + RD++VI W+D D GA ++ L + VF +FS N
Sbjct: 109 VIGATPPHLSLE---RDKSVIPWYDLVIDIGAESKEEALELVKPLDFAVFKKHFSVLNGK 165
Query: 158 FKNT 161
+ +T
Sbjct: 166 YVST 169
>pdb|2CF4|A Chain A, Pyrococcus Horikoshii Tet1 Peptidase Can Assemble Into A
Tetrahedron Or A Large Octahedral Shell
Length = 332
Score = 34.3 bits (77), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 32/64 (50%), Gaps = 5/64 (7%)
Query: 100 TVPVSKPYITFQGAGRDRTVIEWHDRACDRGANGQQ--LRTYQTASVTVFANYFSARNIS 157
+ + P+++ + RD++VI W+D D GA ++ L + VF +FS N
Sbjct: 109 VIGATPPHLSLE---RDKSVIPWYDLVIDIGAESKEEALELVKPLDFAVFKKHFSVLNGK 165
Query: 158 FKNT 161
+ +T
Sbjct: 166 YVST 169
>pdb|1S5L|C Chain C, Architecture Of The Photosynthetic Oxygen Evolving Center
pdb|1S5L|CC Chain c, Architecture Of The Photosynthetic Oxygen Evolving Center
pdb|1W5C|C Chain C, Photosystem Ii From Thermosynechococcus Elongatus
pdb|1W5C|I Chain I, Photosystem Ii From Thermosynechococcus Elongatus
pdb|2AXT|C Chain C, Crystal Structure Of Photosystem Ii From
Thermosynechococcus Elongatus
pdb|2AXT|CC Chain c, Crystal Structure Of Photosystem Ii From
Thermosynechococcus Elongatus
pdb|3BZ1|C Chain C, Crystal Structure Of Cyanobacterial Photosystem Ii (Part 1
Of 2). This File Contains First Monomer Of Psii Dimer
pdb|3BZ2|C Chain C, Crystal Structure Of Cyanobacterial Photosystem Ii (Part 2
Of 2). This File Contains Second Monomer Of Psii Dimer
Length = 473
Score = 29.3 bits (64), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
Query: 308 KTAFFG-VYKCWGPGAANVRGASWARELDYESAHPFLVKSFINGRHWIA 355
K FFG +Y W PG +VR + LD +L+KS G WI
Sbjct: 178 KAMFFGGLYDTWAPGGGDVRVIT-NPTLDPRVIFGYLLKSPFGGEGWIV 225
>pdb|3KZI|C Chain C, Crystal Structure Of Monomeric Form Of Cyanobacterial
Photosystem Ii
pdb|3PRQ|C Chain C, Crystal Structure Of Cyanobacterial Photosystem Ii In
Complex With Terbutryn (Part 1 Of 2). This File Contains
First Monomer Of Psii Dimer
pdb|3PRR|C Chain C, Crystal Structure Of Cyanobacterial Photosystem Ii In
Complex With Terbutryn (Part 2 Of 2). This File Contains
Second Monomer Of Psii Dimer
pdb|4FBY|C Chain C, Fs X-Ray Diffraction Of Photosystem Ii
pdb|4FBY|P Chain P, Fs X-Ray Diffraction Of Photosystem Ii
pdb|4IXQ|C Chain C, Rt Fs X-ray Diffraction Of Photosystem Ii, Dark State
pdb|4IXQ|CC Chain c, Rt Fs X-ray Diffraction Of Photosystem Ii, Dark State
pdb|4IXR|C Chain C, Rt Fs X-ray Diffraction Of Photosystem Ii, First
Illuminated State
pdb|4IXR|CC Chain c, Rt Fs X-ray Diffraction Of Photosystem Ii, First
Illuminated State
Length = 461
Score = 29.3 bits (64), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
Query: 308 KTAFFG-VYKCWGPGAANVRGASWARELDYESAHPFLVKSFINGRHWIA 355
K FFG +Y W PG +VR + LD +L+KS G WI
Sbjct: 166 KAMFFGGLYDTWAPGGGDVRVIT-NPTLDPRVIFGYLLKSPFGGEGWIV 213
>pdb|3ARC|C Chain C, Crystal Structure Of Oxygen-Evolving Photosystem Ii At 1.9
Angstrom Resolution
pdb|3ARC|CC Chain c, Crystal Structure Of Oxygen-Evolving Photosystem Ii At 1.9
Angstrom Resolution
Length = 455
Score = 29.3 bits (64), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
Query: 308 KTAFFG-VYKCWGPGAANVRGASWARELDYESAHPFLVKSFINGRHWIA 355
K FFG +Y W PG +VR + LD +L+KS G WI
Sbjct: 160 KAMFFGGLYDTWAPGGGDVRVIT-NPTLDPRVIFGYLLKSPFGGEGWIV 207
>pdb|3A0B|C Chain C, Crystal Structure Of Br-Substituted Photosystem Ii Complex
pdb|3A0B|CC Chain c, Crystal Structure Of Br-Substituted Photosystem Ii Complex
pdb|3A0H|C Chain C, Crystal Structure Of I-Substituted Photosystem Ii Complex
pdb|3A0H|CC Chain c, Crystal Structure Of I-Substituted Photosystem Ii Complex
Length = 447
Score = 28.9 bits (63), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
Query: 308 KTAFFG-VYKCWGPGAANVRGASWARELDYESAHPFLVKSFINGRHWIA 355
K FFG +Y W PG +VR + LD +L+KS G WI
Sbjct: 152 KAMFFGGLYDTWAPGGGDVRVIT-NPTLDPRVIFGYLLKSPFGGEGWIV 199
>pdb|1IZL|C Chain C, Crystal Structure Of Photosystem Ii
pdb|1IZL|M Chain M, Crystal Structure Of Photosystem Ii
Length = 473
Score = 28.9 bits (63), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
Query: 308 KTAFFG-VYKCWGPGAANVRGASWARELDYESAHPFLVKSFINGRHWIA 355
K FFG +Y W PG +VR + LD +L+KS G WI
Sbjct: 178 KAMFFGGLYDTWAPGGGDVRVIT-NPTLDPRVIFGYLLKSPFGGEGWIV 225
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.136 0.438
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,324,119
Number of Sequences: 62578
Number of extensions: 484571
Number of successful extensions: 1002
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 980
Number of HSP's gapped (non-prelim): 14
length of query: 359
length of database: 14,973,337
effective HSP length: 100
effective length of query: 259
effective length of database: 8,715,537
effective search space: 2257324083
effective search space used: 2257324083
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 52 (24.6 bits)