BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 018250
(359 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1M6E|X Chain X, Crystal Structure Of Salicylic Acid Carboxyl
Methyltransferase (Samt)
Length = 359
Score = 168 bits (426), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 122/365 (33%), Positives = 176/365 (48%), Gaps = 33/365 (9%)
Query: 11 MMGGDGTCSYAHNSQFQRGTVDAAKELVREAIVNKLDVGSYGYDNSYT-VRIADLGCSVG 69
M GG G SYA NS QR + K + AI Y D T + IADLGCS G
Sbjct: 9 MKGGAGENSYAMNSFIQRQVISITKPITEAAIT-----ALYSGDTVTTRLAIADLGCSSG 63
Query: 70 PNTFISVQNIIEALEFKFQNLSLP-VPDFQVFFNDHTENDFNTLFRTLPPRK-----YYA 123
PN +V +I+ +E + + P++Q+F ND NDFN +FR+LP +
Sbjct: 64 PNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIENDVDGVCFI 123
Query: 124 AGVPGSFHGRLFPKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFM-KGVH 182
GVPGSF+GRLFP++TLH ++S ++ WLS+ P +E N+G+I + V
Sbjct: 124 NGVPGSFYGRLFPRNTLHFIHSSYSLMWLSQVP------IGIESNKGNIYMANTCPQSVL 177
Query: 183 ETFQAQFRSDFESILNARAEELVPGGLMVFSLITGPSGIPFADTVQGATYNFLGSCLWDL 242
+ QF+ D L RA+E+VPGG MV +++ G A T + L L +
Sbjct: 178 NAYYKQFQEDHALFLRCRAQEVVPGGRMVLTIL-GRRSEDRASTECCLIWQLLAMALNQM 236
Query: 243 AKMGVISEEKARTFNVPAYFPYVEELESLIQRNGHFAMERMQQLDQPMRHKTFPAQFYLS 302
G+I EEK FN+P Y P E+E+ I + G F ++ ++ + T S
Sbjct: 237 VSEGLIEEEKMDKFNIPQYTPSPTEVEAEILKEGSFLIDHIEASEIYWSSCTKDGDGGGS 296
Query: 303 ----------HLRAVLEGLIGKHFGEELLENIFNHINTKEAEILSIHNGKLHKEIEVFVV 352
+RAV E L+ HFGE ++E++F+ E +S K I V V
Sbjct: 297 VEEEGYNVARCMRAVAEPLLLDHFGEAIIEDVFHRYKLLIIERMSKEKTKF---INVIVS 353
Query: 353 LKRIS 357
L R S
Sbjct: 354 LIRKS 358
>pdb|2EG5|A Chain A, The Structure Of Xanthosine Methyltransferase
pdb|2EG5|C Chain C, The Structure Of Xanthosine Methyltransferase
pdb|2EG5|E Chain E, The Structure Of Xanthosine Methyltransferase
pdb|2EG5|G Chain G, The Structure Of Xanthosine Methyltransferase
Length = 372
Score = 164 bits (415), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 103/363 (28%), Positives = 183/363 (50%), Gaps = 31/363 (8%)
Query: 1 MAVDEVVTFPMMGGDGTCSYAHNSQFQRGTVDAAKELVREAIVNKLDVGSYGYDNSYTVR 60
M + EV+ M GG+G SYA NS + + + K ++ + + L + ++
Sbjct: 1 MELQEVLR--MNGGEGDTSYAKNSAYNQLVLAKVKPVLEQCVRELLRANLPNINK--CIK 56
Query: 61 IADLGCSVGPNTFISVQNIIEALEFKFQNLS--LPVPDFQVFFNDHTENDFNTLFRTLPP 118
+ADLGC+ GPNT ++V++I+++++ Q L P Q+F ND NDFN++F+ LP
Sbjct: 57 VADLGCASGPNTLLTVRDIVQSIDKVGQEKKNELERPTIQIFLNDLFPNDFNSVFKLLPS 116
Query: 119 ----------RKYYAA---GVPGSFHGRLFPKSTLHVVNSFNAMHWLSKTPKVNMLEKSL 165
RK + +PGSF+ RLFP+ ++H ++S + WLS+ P + E +
Sbjct: 117 FYRKLEKENGRKIGSCLIGAMPGSFYSRLFPEESMHFLHSCYCLQWLSQVPSGLVTELGI 176
Query: 166 EWNQGSIKCTRFMK-GVHETFQAQFRSDFESILNARAEELVPGGLMVFSLITGPSGIPFA 224
N+GSI ++ + V + + QF DF + L +EEL G M+ + I +
Sbjct: 177 GTNKGSIYSSKASRLPVQKAYLDQFTKDFTTFLRIHSEELFSHGRMLLTCICKGVELDAR 236
Query: 225 DTVQGATYNFLGSCLWDLAKMGVISEEKARTFNVPAYFPYVEELESLIQRNGHFAMERMQ 284
+ + + L + DL G + EEK +FN+P Y P EE++ +++ G F + ++
Sbjct: 237 NAI-----DLLEMAINDLVVEGHLEEEKLDSFNLPVYIPSAEEVKCIVEEEGSFEILYLE 291
Query: 285 QLDQ------PMRHKTFPAQFYLSHLRAVLEGLIGKHFGEELLENIFNHINTKEAEILSI 338
+ + A++ S +RAV E ++ HFGE ++ +IF+ A++L +
Sbjct: 292 TFKVLYDAGFSIDDEHIKAEYVASSVRAVYEPILASHFGEAIIPDIFHRFAKHAAKVLPL 351
Query: 339 HNG 341
G
Sbjct: 352 GKG 354
>pdb|3B5I|A Chain A, Crystal Structure Of Indole-3-Acetic Acid
Methyltransferase
pdb|3B5I|B Chain B, Crystal Structure Of Indole-3-Acetic Acid
Methyltransferase
Length = 374
Score = 160 bits (405), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 109/352 (30%), Positives = 172/352 (48%), Gaps = 41/352 (11%)
Query: 11 MMGGDGTCSYAHNSQFQRGTVDAAKELVREAIVNKLDVGSYGYDNSYTVRIADLGCSVGP 70
M GG G SYA+NS Q + L+ E + N + + S +T DLGCS G
Sbjct: 9 MKGGKGQDSYANNSLAQAMHARSMLHLLEETLEN-VHLNSSASPPPFTA--VDLGCSSGA 65
Query: 71 NTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPP------------ 118
NT + I++ + +F + P+F FF+D NDFNTLF+ LPP
Sbjct: 66 NTVHIIDFIVKHISKRFDAAGIDPPEFTAFFSDLPSNDFNTLFQLLPPLVSNTCMEECLA 125
Query: 119 ----RKYYAAGVPGSFHGRLFPKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKC 174
R Y+ AGVPGSF+ RLFP T+ +S ++HWLS+ P+ +S +N+G +
Sbjct: 126 ADGNRSYFVAGVPGSFYRRLFPARTIDFFHSAFSLHWLSQVPESVTDRRSAAYNRGRV-- 183
Query: 175 TRFMKGVHE----TFQAQFRSDFESILNARAEELVPGGLMVFSLITGPSGIPFADTVQGA 230
F+ G E ++ QF++D L ARA E+ GG M + S P T QG
Sbjct: 184 --FIHGAGEKTTTAYKRQFQADLAEFLRARAAEVKRGGAMFLVCLGRTSVDP---TDQGG 238
Query: 231 TYNFLGSCL---W-DLAKMGVISEEKARTFNVPAYFPYVEELESLIQRNGHFAMERM--Q 284
G+ W DL + G+++ EK FN+P Y P +++ + ++ NG FA++++
Sbjct: 239 AGLLFGTHFQDAWDDLVREGLVAAEKRDGFNIPVYAPSLQDFKEVVDANGSFAIDKLVVY 298
Query: 285 QLDQPM-----RHKTFPAQFYLSHLRAVLEGLIGKHFGEELLENIFNHINTK 331
+ P+ + + + S R+V L+ H GEEL +F+ + ++
Sbjct: 299 KGGSPLVVNEPDDASEVGRAFASSCRSVAGVLVEAHIGEELSNKLFSRVESR 350
>pdb|2EFJ|A Chain A, The Structure Of 1,7 Dimethylxanthine Methyltransferase
Length = 384
Score = 151 bits (381), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 104/376 (27%), Positives = 181/376 (48%), Gaps = 45/376 (11%)
Query: 1 MAVDEVVTFPMMGGDGTCSYAHNSQFQRGTVDAAKELVREAIVNKLDVGSYGYDNSYTVR 60
M + EV+ M GG+G SYA NS + + K ++ + I L + + +
Sbjct: 1 MELQEVLH--MNGGEGDTSYAKNSSYNLFLI-RVKPVLEQCIQELLRANLPNINKCF--K 55
Query: 61 IADLGCSVGPNTFISVQNIIEALEFKFQNLS--LPVPDFQVFFNDHTENDFNTLFRTLPP 118
+ DLGC+ GPNTF +V++I+++++ Q L P Q+F ND +NDFN++F+ LP
Sbjct: 56 VGDLGCASGPNTFSTVRDIVQSIDKVGQEKKNELERPTIQIFLNDLFQNDFNSVFKLLPS 115
Query: 119 ----------RKYYAA---GVPGSFHGRLFPKSTLHVVNSFNAMHWLSKTPKVNMLEKSL 165
RK + +PGSF+ RLFP+ ++H ++S +HWLS+ P + E +
Sbjct: 116 FYRNLEKENGRKIGSCLIGAMPGSFYSRLFPEESMHFLHSCYCLHWLSQVPSGLVTELGI 175
Query: 166 EWNQGSIKCTRFMK-GVHETFQAQFRSDFESILNARAEELVPGGLMVFSLITGPSGIPFA 224
N+G I ++ + + + + QF DF + L +EEL+ G M+ + I
Sbjct: 176 SVNKGCIYSSKASRPPIQKAYLDQFTKDFTTFLRIHSEELISRGRMLLTFICKEDEFDHP 235
Query: 225 DTVQGATYNFLGSCLWDLAKMGVISEEKARTFNVPAYFPYVEELESLIQRNGHFAMERMQ 284
+++ + L + DL G + EEK +FNVP Y P EE++ +++ G F + ++
Sbjct: 236 NSM-----DLLEMSINDLVIEGHLEEEKLDSFNVPIYAPSTEEVKRIVEEEGSFEILYLE 290
Query: 285 QLDQPM-------------RHKTFP------AQFYLSHLRAVLEGLIGKHFGEELLENIF 325
+ P H A S +R++ E ++ HFGE +L ++
Sbjct: 291 TFNAPYDAGFSIDDDYQGRSHSPVSCDEHARAAHVASVVRSIYEPILASHFGEAILPDLS 350
Query: 326 NHINTKEAEILSIHNG 341
+ I A++L G
Sbjct: 351 HRIAKNAAKVLRSGKG 366
>pdb|2E18|A Chain A, Crystal Structure Of Project Ph0182 From Pyrococcus
Horikoshii Ot3
pdb|2E18|B Chain B, Crystal Structure Of Project Ph0182 From Pyrococcus
Horikoshii Ot3
Length = 257
Score = 35.4 bits (80), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
Query: 229 GATYNFLGSCLWDLAKMGVISEEKARTFNVPAYFPYVEELESLIQRNGH 277
G +YN L LW + + + EE A+ +P VE +E LI+++ H
Sbjct: 194 GISYNLLDEILWRMIDLKIGKEEIAKDLGIP--LSLVERVEELIKKSEH 240
>pdb|3N2O|A Chain A, X-Ray Crystal Structure Of Arginine Decarboxylase
Complexed With Arginine From Vibrio Vulnificus
pdb|3N2O|B Chain B, X-Ray Crystal Structure Of Arginine Decarboxylase
Complexed With Arginine From Vibrio Vulnificus
pdb|3N2O|C Chain C, X-Ray Crystal Structure Of Arginine Decarboxylase
Complexed With Arginine From Vibrio Vulnificus
pdb|3N2O|D Chain D, X-Ray Crystal Structure Of Arginine Decarboxylase
Complexed With Arginine From Vibrio Vulnificus
Length = 648
Score = 29.3 bits (64), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 46/103 (44%), Gaps = 11/103 (10%)
Query: 6 VVTFPMMGG-----DGTCSYAHNSQFQRGTVDAAKELVREAIVNKLDVGSYGYDNSYTVR 60
+ F + GG DGT S + NS G V+ A+ IVN + Y V
Sbjct: 287 ITYFDVGGGLAIDYDGTRSQSSNS-MNYGLVEYARN-----IVNTVGDVCKDYKQPMPVI 340
Query: 61 IADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFND 103
I++ G S+ + + + N+I +K + ++ P DF + N+
Sbjct: 341 ISESGRSLTAHHAVLISNVIGTETYKPETVTEPEEDFPLLLNN 383
>pdb|1IBC|A Chain A, Crystal Structure Of Inhibited Interleukin-1beta
Converting Enzyme
Length = 194
Score = 28.9 bits (63), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 5/50 (10%)
Query: 292 HKTFPAQFYLSHLRAVLEGLIGKHFGEEL-----LENIFNHINTKEAEIL 336
HKT + F + + EG+ GK E++ L IFN +NTK L
Sbjct: 121 HKTSDSTFLVFMSHGIREGICGKKHSEQVPDILQLNAIFNMLNTKNCPSL 170
>pdb|2HBR|A Chain A, Crystal Structure Of Human Caspase-1 (Arg286->ala) In
Complex With 3-
[2-(2-Benzyloxycarbonylamino-3-Methyl-Butyrylamino)-
Propionylamino]- 4-Oxo-Pentanoic Acid (Z-Vad-Fmk)
pdb|2HBZ|A Chain A, Crystal Structure Of Human Caspase-1 (Arg286->ala,
Glu390->ala) In Complex With
3-[2-(2-Benzyloxycarbonylamino-3-Methyl-Butyrylamino)-
Propionylamino]-4-Oxo-Pentanoic Acid (Z-Vad-Fmk)
Length = 178
Score = 28.9 bits (63), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 5/50 (10%)
Query: 292 HKTFPAQFYLSHLRAVLEGLIGKHFGEEL-----LENIFNHINTKEAEIL 336
HKT + F + + EG+ GK E++ L IFN +NTK L
Sbjct: 105 HKTSDSTFLVFMSHGIREGICGKKHSEQVPDILQLNAIFNMLNTKNCPSL 154
>pdb|1RWK|A Chain A, Crystal Structure Of Human Caspase-1 In Complex With
3-(2-Mercapto- Acetylamino)-4-Oxo-Pentanoic Acid
pdb|1RWM|A Chain A, Crystal Structure Of Human Caspase-1 In Complex With
4-Oxo-3-[2-(5-
{[4-(Quinoxalin-2-Ylamino)-Benzoylamino]-Methyl}-
Thiophen-2-Yl)- Acetylamino]-Pentanoic Acid
pdb|1RWN|A Chain A, Crystal Structure Of Human Caspase-1 In Complex With
3-{2-Ethyl-6-[4-
(Quinoxalin-2-Ylamino)-Benzoylamino]-Hexanoylamino}-4-
Oxo-Butyric Acid
pdb|1RWO|A Chain A, Crystal Structure Of Human Caspase-1 In Complex With
4-Oxo-3-{6-[4-
(Quinoxalin-2-Ylamino)-Benzoylamino]-2-Thiophen-2-Yl-
Hexanoylamino}- Pentanoic Acid
pdb|1RWP|A Chain A, Crystal Structure Of Human Caspase-1 In Complex With
3-{6-[(8-Hydroxy-
Quinoline-2-Carbonyl)-Amino]-2-Thiophen-2-Yl-
Hexanoylamino}-4-Oxo- Butyric Acid
pdb|1RWV|A Chain A, Crystal Structure Of Human Caspase-1 In Complex With
5-[5-(1-
Carboxymethyl-2-oxo-propylcarbamoyl)-5-phenyl-
pentylsulfamoyl]-2- Hydroxy-benzoic Acid
pdb|1RWW|A Chain A, Crystal Structure Of Human Caspase-1 In Complex With
4-Oxo-3-[(6-{[4-
(Quinoxalin-2-Ylamino)-Benzoylamino]-Methyl}-Pyridine-3-
Carbonyl)- Amino]-Butyric Acid
pdb|1RWX|A Chain A, Crystal Structure Of Human Caspase-1 In Complex With
4-Oxo-3-{6-[4-
(Quinoxalin-2-Yloxy)-Benzoylamino]-2-Thiophen-2-Yl-
Hexanoylamino}- Butyric Acid
pdb|2H48|A Chain A, Crystal Structure Of Human Caspase-1 (Cys362->ala,
Cys364->ala, Cys397->ala) In Complex With
3-[2-(2-Benzyloxycarbonylamino-3-Methyl-
Butyrylamino)-Propionylamino]-4-Oxo-Pentanoic Acid
(Z-Vad-Fmk)
pdb|2HBQ|A Chain A, Crystal Structure Of Wildtype Human Caspase-1 In Complex
With 3-[2-(2-
Benzyloxycarbonylamino-3-Methyl-Butyrylamino)-
Propionylamino]-4-Oxo- Pentanoic Acid (Z-Vad-Fmk)
pdb|2HBY|A Chain A, Crystal Structure Of Human Caspase-1 (Glu390->ala) In
Complex With 3-
[2-(2-Benzyloxycarbonylamino-3-Methyl-Butyrylamino)-
Propionylamino]- 4-Oxo-Pentanoic Acid (Z-Vad-Fmk)
pdb|2H4W|A Chain A, Crystal Structure Of Human Caspase-1 (Glu390->asp) In
Complex With 3-
[2-(2-Benzyloxycarbonylamino-3-Methyl-Butyrylamino)-
Propionylamino]- 4-Oxo-Pentanoic Acid (Z-Vad-Fmk)
pdb|2H54|A Chain A, Crystal Structure Of Human Caspase-1 (Thr388->ala) In
Complex With 3-
[2-(2-Benzyloxycarbonylamino-3-Methyl-Butyrylamino)-
Propionylamino]- 4-Oxo-Pentanoic Acid (Z-Vad-Fmk)
Length = 178
Score = 28.9 bits (63), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 5/50 (10%)
Query: 292 HKTFPAQFYLSHLRAVLEGLIGKHFGEEL-----LENIFNHINTKEAEIL 336
HKT + F + + EG+ GK E++ L IFN +NTK L
Sbjct: 105 HKTSDSTFLVFMSHGIREGICGKKHSEQVPDILQLNAIFNMLNTKNCPSL 154
>pdb|3D6M|A Chain A, Crystal Structure Of Human Caspase-1 With A
Naturally-Occurring Lys319->arg Substitution In Complex
With 3-[2-(2-
Benzyloxycarbonylamino-3-Methyl-Butyrylamino)-
Propionylamino]-4-Oxo- Pentanoic Acid (Z-Vad-Fmk)
Length = 179
Score = 28.9 bits (63), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 5/50 (10%)
Query: 292 HKTFPAQFYLSHLRAVLEGLIGKHFGEEL-----LENIFNHINTKEAEIL 336
HKT + F + + EG+ GK E++ L IFN +NTK L
Sbjct: 106 HKTSDSTFLVFMSHGIREGICGKKHSEQVPDILQLNAIFNMLNTKNCPSL 155
>pdb|2H4Y|A Chain A, Crystal Structure Of Human Caspase-1 (Arg286->lys) In
Complex With 3-
[2-(2-Benzyloxycarbonylamino-3-Methyl-Butyrylamino)-
Propionylamino]- 4-Oxo-Pentanoic Acid (Z-Vad-Fmk)
pdb|2H51|A Chain A, Crystal Structure Of Human Caspase-1 (Glu390->asp And
Arg286->lys) In Complex With
3-[2-(2-Benzyloxycarbonylamino-3-Methyl-Butyrylamino)-
Propionylamino]-4-Oxo-Pentanoic Acid (Z-Vad-Fmk)
Length = 178
Score = 28.9 bits (63), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 5/50 (10%)
Query: 292 HKTFPAQFYLSHLRAVLEGLIGKHFGEEL-----LENIFNHINTKEAEIL 336
HKT + F + + EG+ GK E++ L IFN +NTK L
Sbjct: 105 HKTSDSTFLVFMSHGIREGICGKKHSEQVPDILQLNAIFNMLNTKNCPSL 154
>pdb|1SC1|A Chain A, Crystal Structure Of An Active-Site Ligand-Free Form Of
The Human Caspase-1 C285a Mutant
pdb|1SC3|A Chain A, Crystal Structure Of The Human Caspase-1 C285a Mutant In
Complex With Malonate
pdb|1SC4|A Chain A, Crystal Structure Of The Human Caspase-1 C285a Mutant
After Removal Of Malonate
pdb|2FQQ|A Chain A, Crystal Structure Of Human Caspase-1 (Cys285->ala,
Cys362->ala, Cys364->ala, Cys397->ala) In Complex With
1-Methyl-3-Trifluoromethyl-
1h-Thieno[2,3-C]pyrazole-5-Carboxylic Acid
(2-Mercapto-Ethyl)-Amide
Length = 178
Score = 28.5 bits (62), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 5/50 (10%)
Query: 292 HKTFPAQFYLSHLRAVLEGLIGKHFGEEL-----LENIFNHINTKEAEIL 336
HKT + F + + EG+ GK E++ L IFN +NTK L
Sbjct: 105 HKTSDSTFLVFMSHGIREGICGKKHSEQVPDILQLNAIFNMLNTKNCPSL 154
>pdb|3D6F|A Chain A, Crystal Structure Of Human Caspase-1 With A
Naturally-Occurring Arg240->gln Substitution In Complex
With 3-[2-(2-
Benzyloxycarbonylamino-3-Methyl-Butyrylamino)-
Propionylamino]-4-Oxo- Pentanoic Acid (Z-Vad-Fmk)
Length = 179
Score = 28.5 bits (62), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 5/50 (10%)
Query: 292 HKTFPAQFYLSHLRAVLEGLIGKHFGEEL-----LENIFNHINTKEAEIL 336
HKT + F + + EG+ GK E++ L IFN +NTK L
Sbjct: 106 HKTSDSTFLVFMSHGIQEGICGKKHSEQVPDILQLNAIFNMLNTKNCPSL 155
>pdb|3E4C|A Chain A, Procaspase-1 Zymogen Domain Crystal Strucutre
pdb|3E4C|B Chain B, Procaspase-1 Zymogen Domain Crystal Strucutre
Length = 302
Score = 28.5 bits (62), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 5/50 (10%)
Query: 292 HKTFPAQFYLSHLRAVLEGLIGKHFGEEL-----LENIFNHINTKEAEIL 336
HKT + F + + EG+ GK E++ L IFN +NTK L
Sbjct: 122 HKTSDSTFLVFMSHGIREGICGKKHSEQVPDILQLNAIFNMLNTKNCPSL 171
>pdb|1ICE|A Chain A, Structure And Mechanism Of Interleukin-1beta Converting
Enzyme
pdb|1BMQ|A Chain A, Crystal Structure Of The Complex Of Interleukin-1beta
Converting Enzyme (Ice) With A Peptide Based Inhibitor,
(3s
)-N-Methanesulfonyl-3-({1-[n-(2-Naphtoyl)-L-Valyl]-L-
Prolyl }amino)-4-Oxobutanamide
Length = 167
Score = 28.5 bits (62), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 5/50 (10%)
Query: 292 HKTFPAQFYLSHLRAVLEGLIGKHFGEEL-----LENIFNHINTKEAEIL 336
HKT + F + + EG+ GK E++ L IFN +NTK L
Sbjct: 94 HKTSDSTFLVFMSHGIREGICGKKHSEQVPDILQLNAIFNMLNTKNCPSL 143
>pdb|3NS7|A Chain A, Succinic Acid Amides As P2-P3 Replacements For Inhibitors
Of Interleukin-1beta Converting Enzyme (Ice Or Caspase
1)
Length = 162
Score = 28.5 bits (62), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 5/50 (10%)
Query: 292 HKTFPAQFYLSHLRAVLEGLIGKHFGEEL-----LENIFNHINTKEAEIL 336
HKT + F + + EG+ GK E++ L IFN +NTK L
Sbjct: 89 HKTSDSTFLVFMSHGIREGICGKKHSEQVPDILQLNAIFNMLNTKNCPSL 138
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.137 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,952,612
Number of Sequences: 62578
Number of extensions: 450993
Number of successful extensions: 1098
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 1069
Number of HSP's gapped (non-prelim): 22
length of query: 359
length of database: 14,973,337
effective HSP length: 100
effective length of query: 259
effective length of database: 8,715,537
effective search space: 2257324083
effective search space used: 2257324083
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)