Query 018250
Match_columns 359
No_of_seqs 173 out of 682
Neff 7.0
Searched_HMMs 46136
Date Fri Mar 29 07:24:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018250.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018250hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02668 indole-3-acetate carb 100.0 5.4E-94 1.2E-98 703.7 37.6 346 4-354 13-384 (386)
2 PF03492 Methyltransf_7: SAM d 100.0 1.2E-87 2.6E-92 655.0 28.8 314 38-356 1-334 (334)
3 PRK14103 trans-aconitate 2-met 99.7 2.6E-15 5.6E-20 141.3 19.3 226 17-336 4-232 (255)
4 PRK01683 trans-aconitate 2-met 99.7 7.6E-15 1.6E-19 138.0 20.3 248 17-355 6-256 (258)
5 PRK10258 biotin biosynthesis p 99.7 2.4E-15 5.3E-20 140.9 15.2 211 15-328 15-230 (251)
6 TIGR02072 BioC biotin biosynth 99.6 1.1E-13 2.3E-18 127.3 19.9 218 16-333 5-223 (240)
7 COG4106 Tam Trans-aconitate me 99.4 6.4E-12 1.4E-16 113.8 14.0 223 56-356 29-256 (257)
8 COG2226 UbiE Methylase involve 99.3 7.5E-12 1.6E-16 116.6 10.2 168 57-284 51-223 (238)
9 PLN02233 ubiquinone biosynthes 99.3 8.5E-11 1.8E-15 111.3 16.1 166 57-285 73-248 (261)
10 PLN02244 tocopherol O-methyltr 99.3 5.8E-10 1.3E-14 109.6 20.8 157 57-286 118-279 (340)
11 PTZ00098 phosphoethanolamine N 99.2 7.9E-10 1.7E-14 104.8 18.9 189 57-333 52-246 (263)
12 TIGR00740 methyltransferase, p 99.2 1.1E-10 2.3E-15 108.8 12.2 162 57-279 53-221 (239)
13 PLN02336 phosphoethanolamine N 99.2 1.1E-09 2.3E-14 112.1 19.8 187 57-333 266-458 (475)
14 PRK08317 hypothetical protein; 99.2 5.9E-09 1.3E-13 95.5 22.3 219 57-357 19-241 (241)
15 TIGR02752 MenG_heptapren 2-hep 99.2 1.2E-10 2.7E-15 107.4 9.6 173 58-286 46-219 (231)
16 PRK15068 tRNA mo(5)U34 methylt 99.1 2.6E-10 5.7E-15 111.2 11.7 149 58-287 123-276 (322)
17 PF13489 Methyltransf_23: Meth 99.1 2.9E-10 6.3E-15 98.0 9.5 138 56-282 21-160 (161)
18 PF01209 Ubie_methyltran: ubiE 99.1 1.2E-10 2.5E-15 108.7 5.7 167 57-285 47-220 (233)
19 PRK15451 tRNA cmo(5)U34 methyl 99.1 1.3E-09 2.9E-14 102.3 12.4 163 57-279 56-224 (247)
20 PF08241 Methyltransf_11: Meth 99.0 3.7E-10 8.1E-15 88.4 6.2 94 62-212 1-95 (95)
21 PLN02396 hexaprenyldihydroxybe 99.0 2.1E-09 4.7E-14 104.7 12.3 153 58-286 132-290 (322)
22 TIGR00452 methyltransferase, p 99.0 2.5E-09 5.4E-14 103.9 12.5 163 58-305 122-289 (314)
23 PRK11036 putative S-adenosyl-L 99.0 3.9E-09 8.5E-14 99.3 12.9 160 57-287 44-209 (255)
24 smart00828 PKS_MT Methyltransf 99.0 9.1E-09 2E-13 94.5 14.4 142 60-286 2-145 (224)
25 PLN02490 MPBQ/MSBQ methyltrans 98.9 1.3E-08 2.7E-13 99.9 13.7 145 57-286 113-257 (340)
26 PRK11705 cyclopropane fatty ac 98.9 1.1E-07 2.4E-12 95.0 20.3 145 58-286 168-313 (383)
27 PRK06202 hypothetical protein; 98.9 2.1E-08 4.6E-13 93.0 12.1 164 56-287 59-224 (232)
28 KOG2940 Predicted methyltransf 98.9 3.2E-08 7E-13 90.7 12.8 196 58-333 73-277 (325)
29 TIGR01934 MenG_MenH_UbiE ubiqu 98.9 1.2E-07 2.7E-12 86.1 16.1 165 57-287 39-212 (223)
30 KOG1540 Ubiquinone biosynthesi 98.8 5.9E-09 1.3E-13 96.8 7.2 173 56-282 99-278 (296)
31 PRK11088 rrmA 23S rRNA methylt 98.8 9.4E-08 2E-12 90.9 15.0 166 57-323 85-250 (272)
32 PRK00216 ubiE ubiquinone/menaq 98.8 3.5E-08 7.6E-13 90.7 11.5 164 58-286 52-226 (239)
33 PRK11207 tellurite resistance 98.8 3E-08 6.4E-13 90.0 10.6 138 58-285 31-170 (197)
34 PRK11873 arsM arsenite S-adeno 98.8 5.8E-08 1.3E-12 92.1 12.6 154 57-286 77-231 (272)
35 TIGR00477 tehB tellurite resis 98.8 5.1E-08 1.1E-12 88.3 10.4 139 58-285 31-169 (195)
36 PF02353 CMAS: Mycolic acid cy 98.7 3.7E-06 8.1E-11 80.3 21.8 167 58-313 63-235 (273)
37 PRK12335 tellurite resistance 98.7 8.1E-08 1.7E-12 92.2 9.5 137 59-285 122-259 (287)
38 KOG1541 Predicted protein carb 98.6 2.9E-07 6.3E-12 84.0 11.1 141 17-218 20-164 (270)
39 PRK06922 hypothetical protein; 98.6 6.5E-08 1.4E-12 101.2 7.8 113 58-214 419-537 (677)
40 PRK05785 hypothetical protein; 98.6 3.4E-07 7.3E-12 85.0 11.4 74 58-154 52-125 (226)
41 TIGR02716 C20_methyl_CrtF C-20 98.6 1.6E-06 3.4E-11 83.8 15.9 154 56-282 148-303 (306)
42 PF08242 Methyltransf_12: Meth 98.6 5.8E-08 1.3E-12 77.6 4.9 95 62-210 1-99 (99)
43 PF12847 Methyltransf_18: Meth 98.6 3.3E-07 7.1E-12 74.5 8.9 103 58-214 2-111 (112)
44 PF13847 Methyltransf_31: Meth 98.5 6.5E-07 1.4E-11 77.4 10.5 104 57-216 3-112 (152)
45 TIGR02021 BchM-ChlM magnesium 98.5 9.7E-07 2.1E-11 81.0 12.0 151 57-286 55-207 (219)
46 COG2230 Cfa Cyclopropane fatty 98.5 6.3E-06 1.4E-10 78.6 17.7 187 57-338 72-268 (283)
47 TIGR01983 UbiG ubiquinone bios 98.5 2E-06 4.3E-11 78.8 13.5 158 57-286 45-204 (224)
48 PLN02336 phosphoethanolamine N 98.5 5.1E-07 1.1E-11 92.4 10.4 135 58-279 38-176 (475)
49 PF08003 Methyltransf_9: Prote 98.5 6.5E-07 1.4E-11 85.8 10.3 149 57-286 115-268 (315)
50 PRK00121 trmB tRNA (guanine-N( 98.5 1.8E-07 3.9E-12 85.2 6.1 138 25-215 13-157 (202)
51 smart00138 MeTrc Methyltransfe 98.5 8.4E-07 1.8E-11 84.3 10.7 116 56-213 98-241 (264)
52 KOG3010 Methyltransferase [Gen 98.5 5.2E-06 1.1E-10 76.9 14.4 102 59-219 35-141 (261)
53 TIGR02081 metW methionine bios 98.4 1.1E-06 2.4E-11 79.2 9.9 150 58-287 14-169 (194)
54 PRK07580 Mg-protoporphyrin IX 98.4 1.6E-05 3.4E-10 73.1 16.4 73 57-152 63-140 (230)
55 PF13649 Methyltransf_25: Meth 98.4 1.5E-07 3.2E-12 75.8 2.1 97 61-208 1-101 (101)
56 TIGR00537 hemK_rel_arch HemK-r 98.4 3.7E-06 8E-11 74.8 11.2 123 58-216 20-142 (179)
57 KOG2361 Predicted methyltransf 98.4 3.5E-06 7.5E-11 78.0 11.1 196 19-286 30-238 (264)
58 TIGR00138 gidB 16S rRNA methyl 98.4 1.2E-06 2.5E-11 78.7 7.8 128 58-259 43-173 (181)
59 PRK05134 bifunctional 3-demeth 98.4 2.9E-06 6.2E-11 78.5 10.6 155 57-286 48-206 (233)
60 PF03848 TehB: Tellurite resis 98.4 1.8E-06 3.8E-11 78.2 8.8 105 57-215 30-134 (192)
61 TIGR03438 probable methyltrans 98.3 1.8E-06 4E-11 83.4 9.3 112 58-219 64-182 (301)
62 TIGR03587 Pse_Me-ase pseudamin 98.3 4.7E-06 1E-10 76.2 10.8 77 57-153 43-119 (204)
63 PRK11188 rrmJ 23S rRNA methylt 98.3 3E-06 6.6E-11 77.7 8.3 110 58-218 52-169 (209)
64 KOG1270 Methyltransferases [Co 98.3 5.4E-06 1.2E-10 77.7 9.8 148 59-285 91-249 (282)
65 TIGR03840 TMPT_Se_Te thiopurin 98.2 1.6E-05 3.4E-10 73.3 12.0 142 58-288 35-190 (213)
66 PRK09489 rsmC 16S ribosomal RN 98.2 3.3E-06 7.2E-11 83.2 7.3 107 59-215 198-304 (342)
67 TIGR00091 tRNA (guanine-N(7)-) 98.2 2.9E-06 6.4E-11 76.7 6.2 111 57-214 16-132 (194)
68 PRK08287 cobalt-precorrin-6Y C 98.2 1.3E-05 2.8E-10 71.8 9.9 99 57-215 31-132 (187)
69 PF00891 Methyltransf_2: O-met 98.2 3.7E-05 8.1E-10 71.6 13.2 104 56-219 99-204 (241)
70 PLN02585 magnesium protoporphy 98.1 6.7E-05 1.4E-09 73.2 15.0 72 58-152 145-225 (315)
71 PF05401 NodS: Nodulation prot 98.1 6.8E-06 1.5E-10 74.3 7.4 94 56-215 42-147 (201)
72 PRK15001 SAM-dependent 23S rib 98.1 7.1E-06 1.5E-10 81.8 7.6 107 59-214 230-340 (378)
73 TIGR03534 RF_mod_PrmC protein- 98.1 2E-05 4.3E-10 73.2 9.9 124 58-214 88-217 (251)
74 PTZ00146 fibrillarin; Provisio 98.1 5.2E-05 1.1E-09 72.9 12.4 73 58-148 133-211 (293)
75 PF05175 MTS: Methyltransferas 98.1 1E-05 2.3E-10 71.6 7.1 109 58-215 32-141 (170)
76 TIGR02469 CbiT precorrin-6Y C5 98.0 2E-05 4.4E-10 64.6 8.1 99 58-215 20-123 (124)
77 PLN02232 ubiquinone biosynthes 98.0 2.6E-05 5.6E-10 68.4 9.1 108 129-284 34-146 (160)
78 PRK04266 fibrillarin; Provisio 98.0 4.2E-05 9.1E-10 71.1 10.7 101 58-217 73-179 (226)
79 PRK13944 protein-L-isoaspartat 98.0 2.1E-05 4.5E-10 71.8 8.4 81 58-152 73-155 (205)
80 PRK00107 gidB 16S rRNA methylt 98.0 1.8E-05 3.9E-10 71.5 7.4 98 58-215 46-146 (187)
81 PRK14121 tRNA (guanine-N(7)-)- 98.0 1.3E-05 2.8E-10 79.9 6.8 107 58-214 123-235 (390)
82 PRK14967 putative methyltransf 98.0 5.7E-05 1.2E-09 69.7 10.6 124 58-216 37-161 (223)
83 PRK13255 thiopurine S-methyltr 98.0 0.0001 2.2E-09 68.2 12.1 141 58-287 38-192 (218)
84 PHA03411 putative methyltransf 98.0 5.3E-05 1.1E-09 72.2 10.4 121 58-218 65-187 (279)
85 PF05148 Methyltransf_8: Hypot 98.0 3.3E-05 7.1E-10 70.5 8.6 115 56-285 71-185 (219)
86 COG4123 Predicted O-methyltran 98.0 3E-05 6.5E-10 72.8 8.5 122 56-215 43-171 (248)
87 PF06080 DUF938: Protein of un 97.9 0.00018 3.8E-09 65.7 12.7 154 60-284 28-191 (204)
88 cd02440 AdoMet_MTases S-adenos 97.9 4.2E-05 9.1E-10 59.0 7.6 98 60-213 1-103 (107)
89 TIGR03533 L3_gln_methyl protei 97.9 6E-05 1.3E-09 72.4 9.1 123 58-215 122-252 (284)
90 TIGR00438 rrmJ cell division p 97.9 9E-05 1.9E-09 66.4 9.4 104 57-215 32-147 (188)
91 PRK13942 protein-L-isoaspartat 97.8 8.1E-05 1.8E-09 68.3 8.5 81 57-151 76-157 (212)
92 KOG3045 Predicted RNA methylas 97.8 6.4E-05 1.4E-09 70.4 7.6 87 56-215 179-265 (325)
93 TIGR00080 pimt protein-L-isoas 97.8 9E-05 1.9E-09 68.0 8.5 81 57-151 77-158 (215)
94 COG2227 UbiG 2-polyprenyl-3-me 97.8 3.9E-05 8.4E-10 71.3 5.5 151 57-285 59-215 (243)
95 PF07021 MetW: Methionine bios 97.7 0.00014 3E-09 65.6 8.7 148 58-287 14-169 (193)
96 PRK14968 putative methyltransf 97.7 0.00029 6.2E-09 62.3 10.5 122 58-214 24-148 (188)
97 PF03141 Methyltransf_29: Puta 97.7 2.3E-05 4.9E-10 79.5 3.6 105 56-218 116-223 (506)
98 PRK11805 N5-glutamine S-adenos 97.7 0.00014 3.1E-09 70.6 8.7 122 59-215 135-264 (307)
99 PRK00312 pcm protein-L-isoaspa 97.7 0.00016 3.5E-09 66.0 8.4 79 57-152 78-157 (212)
100 KOG4300 Predicted methyltransf 97.6 0.00016 3.4E-09 65.8 7.4 160 56-292 75-239 (252)
101 PRK00517 prmA ribosomal protei 97.6 0.00016 3.4E-09 68.0 7.6 41 57-113 119-159 (250)
102 PF13659 Methyltransf_26: Meth 97.6 0.00021 4.5E-09 58.4 7.3 108 59-215 2-116 (117)
103 TIGR00406 prmA ribosomal prote 97.5 9.9E-05 2.1E-09 71.0 4.8 101 58-217 160-262 (288)
104 TIGR00536 hemK_fam HemK family 97.4 0.00047 1E-08 66.1 7.7 128 59-215 116-245 (284)
105 PLN03075 nicotianamine synthas 97.4 0.001 2.2E-08 64.2 9.6 104 57-214 123-233 (296)
106 PRK09328 N5-glutamine S-adenos 97.3 0.00097 2.1E-08 62.9 8.8 123 57-214 108-238 (275)
107 TIGR01177 conserved hypothetic 97.3 0.0011 2.5E-08 64.8 9.4 113 58-218 183-298 (329)
108 PRK10901 16S rRNA methyltransf 97.3 0.0011 2.5E-08 67.2 9.7 124 58-215 245-373 (427)
109 COG4976 Predicted methyltransf 97.3 0.00054 1.2E-08 63.3 6.5 139 58-287 126-267 (287)
110 PRK01544 bifunctional N5-gluta 97.3 0.00053 1.2E-08 71.1 7.1 128 58-214 139-269 (506)
111 PF05891 Methyltransf_PK: AdoM 97.3 0.00065 1.4E-08 62.5 6.8 141 56-286 54-202 (218)
112 PRK14966 unknown domain/N5-glu 97.3 0.00097 2.1E-08 67.2 8.6 126 59-214 253-381 (423)
113 PF03291 Pox_MCEL: mRNA cappin 97.3 0.0011 2.5E-08 65.0 8.9 44 138-215 144-187 (331)
114 TIGR00563 rsmB ribosomal RNA s 97.3 0.0014 3.1E-08 66.4 9.7 126 58-217 239-371 (426)
115 KOG3178 Hydroxyindole-O-methyl 97.2 0.0058 1.3E-07 59.8 13.3 150 57-286 177-331 (342)
116 PRK00377 cbiT cobalt-precorrin 97.2 0.0011 2.3E-08 60.0 7.4 101 57-215 40-146 (198)
117 PRK00811 spermidine synthase; 97.2 0.00077 1.7E-08 64.7 6.7 108 56-214 75-191 (283)
118 PRK14903 16S rRNA methyltransf 97.2 0.0011 2.4E-08 67.4 7.8 125 58-218 238-370 (431)
119 COG2813 RsmC 16S RNA G1207 met 97.1 0.0032 6.9E-08 60.6 9.7 103 59-218 160-270 (300)
120 PRK14904 16S rRNA methyltransf 97.1 0.002 4.3E-08 65.7 8.7 125 58-217 251-380 (445)
121 COG2264 PrmA Ribosomal protein 97.0 0.0056 1.2E-07 59.1 10.8 74 57-147 162-237 (300)
122 TIGR03704 PrmC_rel_meth putati 97.0 0.0019 4.2E-08 60.9 7.6 122 58-215 87-217 (251)
123 COG2242 CobL Precorrin-6B meth 97.0 0.011 2.5E-07 53.1 11.7 20 57-76 34-53 (187)
124 PRK14902 16S rRNA methyltransf 97.0 0.0025 5.4E-08 65.0 8.6 122 58-215 251-380 (444)
125 PF02390 Methyltransf_4: Putat 97.0 0.00071 1.5E-08 61.5 4.1 110 60-214 20-133 (195)
126 COG2518 Pcm Protein-L-isoaspar 96.9 0.0057 1.2E-07 56.1 8.9 21 57-77 72-92 (209)
127 PRK13943 protein-L-isoaspartat 96.9 0.0039 8.3E-08 61.1 8.1 76 58-150 81-160 (322)
128 PRK04457 spermidine synthase; 96.7 0.0047 1E-07 58.7 7.5 112 56-218 65-181 (262)
129 TIGR00446 nop2p NOL1/NOP2/sun 96.7 0.0064 1.4E-07 57.7 8.4 122 58-216 72-201 (264)
130 PRK14901 16S rRNA methyltransf 96.7 0.0071 1.5E-07 61.5 9.1 126 58-215 253-385 (434)
131 PRK07402 precorrin-6B methylas 96.7 0.0089 1.9E-07 53.8 8.6 37 58-109 41-77 (196)
132 PF01135 PCMT: Protein-L-isoas 96.7 0.0043 9.4E-08 57.0 6.5 19 58-76 73-91 (209)
133 PLN02672 methionine S-methyltr 96.6 0.01 2.2E-07 66.4 10.2 123 59-218 120-282 (1082)
134 smart00650 rADc Ribosomal RNA 96.5 0.0069 1.5E-07 53.3 6.2 75 58-151 14-89 (169)
135 COG2890 HemK Methylase of poly 96.4 0.0054 1.2E-07 58.9 5.8 122 60-215 113-239 (280)
136 KOG2904 Predicted methyltransf 96.4 0.056 1.2E-06 51.5 12.1 128 58-220 149-291 (328)
137 PRK03612 spermidine synthase; 96.3 0.014 3.1E-07 60.8 8.6 21 56-76 296-316 (521)
138 PRK01544 bifunctional N5-gluta 96.3 0.0094 2E-07 61.9 7.1 137 25-214 323-462 (506)
139 KOG1331 Predicted methyltransf 96.3 0.0079 1.7E-07 57.3 5.9 99 58-221 46-150 (293)
140 PF05724 TPMT: Thiopurine S-me 96.3 0.083 1.8E-06 48.9 12.6 143 56-288 36-193 (218)
141 KOG2899 Predicted methyltransf 96.2 0.02 4.4E-07 53.5 7.8 48 135-214 162-209 (288)
142 TIGR00417 speE spermidine synt 96.2 0.0085 1.8E-07 57.0 5.6 106 57-213 72-185 (270)
143 PRK11783 rlmL 23S rRNA m(2)G24 96.1 0.038 8.2E-07 59.7 10.9 109 58-214 539-656 (702)
144 PLN02366 spermidine synthase 96.1 0.014 3E-07 56.9 6.9 109 56-214 90-206 (308)
145 PHA03412 putative methyltransf 96.1 0.018 3.9E-07 53.9 7.2 72 58-146 50-121 (241)
146 KOG1975 mRNA cap methyltransfe 96.1 0.0087 1.9E-07 58.0 5.2 107 58-216 118-239 (389)
147 KOG1271 Methyltransferases [Ge 96.1 0.13 2.8E-06 46.3 12.2 19 58-76 68-86 (227)
148 PRK13256 thiopurine S-methyltr 96.1 0.12 2.6E-06 48.1 12.5 140 57-286 43-198 (226)
149 COG0220 Predicted S-adenosylme 96.1 0.03 6.4E-07 52.2 8.5 111 59-214 50-164 (227)
150 PRK10611 chemotaxis methyltran 96.0 0.046 1E-06 52.7 9.6 113 57-212 115-260 (287)
151 KOG1499 Protein arginine N-met 95.9 0.016 3.4E-07 56.8 6.0 102 58-211 61-164 (346)
152 PF05185 PRMT5: PRMT5 arginine 95.8 0.026 5.6E-07 57.8 7.2 106 58-211 187-294 (448)
153 PF01728 FtsJ: FtsJ-like methy 95.7 0.19 4E-06 44.5 11.8 37 57-107 23-59 (181)
154 PF11968 DUF3321: Putative met 95.7 0.11 2.3E-06 48.0 10.2 93 56-215 50-150 (219)
155 PF06325 PrmA: Ribosomal prote 95.7 0.055 1.2E-06 52.4 8.8 94 59-215 163-260 (295)
156 KOG3191 Predicted N6-DNA-methy 95.6 0.24 5.2E-06 44.6 11.9 127 58-218 44-172 (209)
157 PF12147 Methyltransf_20: Puta 95.5 0.44 9.6E-06 45.9 13.9 60 196-279 231-292 (311)
158 PF01739 CheR: CheR methyltran 95.4 0.025 5.5E-07 51.4 5.0 117 56-214 30-175 (196)
159 COG1352 CheR Methylase of chem 95.2 0.25 5.4E-06 47.2 11.5 114 57-212 96-239 (268)
160 TIGR00478 tly hemolysin TlyA f 95.2 0.22 4.8E-06 46.4 11.0 39 57-111 75-113 (228)
161 PRK01581 speE spermidine synth 95.2 0.031 6.7E-07 55.5 5.4 38 56-108 149-186 (374)
162 PF10294 Methyltransf_16: Puta 95.1 0.044 9.5E-07 48.7 5.7 110 56-219 44-161 (173)
163 PRK15128 23S rRNA m(5)C1962 me 95.0 0.13 2.7E-06 52.0 9.2 109 58-214 221-339 (396)
164 COG2519 GCD14 tRNA(1-methylade 94.7 0.13 2.9E-06 48.4 7.8 123 57-254 94-220 (256)
165 PLN02781 Probable caffeoyl-CoA 94.6 0.042 9.2E-07 51.2 4.4 36 57-106 68-103 (234)
166 TIGR03439 methyl_EasF probable 94.4 0.26 5.6E-06 48.3 9.5 64 57-131 76-142 (319)
167 KOG1500 Protein arginine N-met 94.1 0.31 6.7E-06 47.8 9.1 104 57-214 177-282 (517)
168 PRK00274 ksgA 16S ribosomal RN 94.0 0.062 1.4E-06 51.2 4.2 74 9-114 9-82 (272)
169 PRK10909 rsmD 16S rRNA m(2)G96 93.9 0.23 5E-06 45.2 7.7 19 58-76 54-72 (199)
170 PF01234 NNMT_PNMT_TEMT: NNMT/ 93.8 0.086 1.9E-06 50.0 4.6 81 139-284 158-238 (256)
171 PF07942 N2227: N2227-like pro 93.7 4.8 0.0001 38.5 16.3 64 191-285 179-242 (270)
172 PRK14896 ksgA 16S ribosomal RN 93.5 0.13 2.9E-06 48.5 5.4 73 58-151 30-103 (258)
173 PF08123 DOT1: Histone methyla 92.8 0.55 1.2E-05 43.0 8.2 19 58-76 43-61 (205)
174 PTZ00338 dimethyladenosine tra 92.6 0.14 3.1E-06 49.5 4.3 20 58-77 37-56 (294)
175 PRK13168 rumA 23S rRNA m(5)U19 92.0 0.48 1E-05 48.3 7.5 68 58-145 298-373 (443)
176 PLN02823 spermine synthase 91.7 0.56 1.2E-05 46.2 7.3 21 56-76 102-122 (336)
177 TIGR00755 ksgA dimethyladenosi 91.4 0.7 1.5E-05 43.3 7.4 20 57-76 29-48 (253)
178 PRK11727 23S rRNA mA1618 methy 91.0 0.27 5.8E-06 48.2 4.2 75 57-146 114-196 (321)
179 PF04672 Methyltransf_19: S-ad 91.0 6 0.00013 37.8 13.1 61 196-281 172-232 (267)
180 COG0500 SmtA SAM-dependent met 90.6 1.1 2.3E-05 35.5 6.9 24 196-219 137-160 (257)
181 PF05219 DREV: DREV methyltran 90.4 0.92 2E-05 43.1 7.0 96 57-215 94-189 (265)
182 PRK11933 yebU rRNA (cytosine-C 90.4 1.8 3.9E-05 44.7 9.8 123 58-216 114-244 (470)
183 PRK03522 rumB 23S rRNA methylu 88.6 0.57 1.2E-05 45.6 4.4 38 58-112 174-211 (315)
184 TIGR02987 met_A_Alw26 type II 88.4 3 6.6E-05 43.4 10.0 45 57-108 31-75 (524)
185 PF09243 Rsm22: Mitochondrial 88.3 4.1 8.8E-05 38.9 10.0 80 56-152 32-115 (274)
186 COG2263 Predicted RNA methylas 87.8 0.29 6.3E-06 44.3 1.7 20 57-76 45-64 (198)
187 COG0030 KsgA Dimethyladenosine 87.6 1.6 3.4E-05 41.6 6.5 52 58-113 31-94 (259)
188 COG4122 Predicted O-methyltran 87.4 0.94 2E-05 42.0 4.8 74 56-145 58-138 (219)
189 PF13679 Methyltransf_32: Meth 87.3 0.85 1.8E-05 38.8 4.3 40 56-106 24-63 (141)
190 PF06859 Bin3: Bicoid-interact 87.3 0.25 5.4E-06 40.7 0.9 44 140-215 2-45 (110)
191 PRK04338 N(2),N(2)-dimethylgua 87.3 1.6 3.5E-05 43.8 6.8 70 16-114 30-99 (382)
192 PRK04148 hypothetical protein; 86.8 1.8 3.9E-05 37.0 5.9 20 57-76 16-36 (134)
193 PRK11524 putative methyltransf 86.8 1.4 3.1E-05 42.1 5.9 22 193-214 59-80 (284)
194 PLN02476 O-methyltransferase 85.8 0.9 2E-05 43.6 4.0 20 57-76 118-137 (278)
195 PLN02589 caffeoyl-CoA O-methyl 85.3 0.9 2E-05 42.9 3.6 36 57-106 79-114 (247)
196 PF02384 N6_Mtase: N-6 DNA Met 84.3 1.6 3.4E-05 42.0 4.9 131 56-215 45-184 (311)
197 PF08704 GCD14: tRNA methyltra 82.6 3.6 7.7E-05 38.9 6.4 21 58-78 41-61 (247)
198 KOG1269 SAM-dependent methyltr 81.7 1.9 4.2E-05 43.0 4.5 102 59-218 112-219 (364)
199 TIGR00479 rumA 23S rRNA (uraci 80.4 4.2 9.2E-05 41.2 6.6 19 58-76 293-311 (431)
200 KOG1661 Protein-L-isoaspartate 78.9 15 0.00031 34.1 8.7 19 58-76 83-101 (237)
201 KOG4589 Cell division protein 77.4 7.3 0.00016 35.5 6.2 22 56-77 68-89 (232)
202 TIGR02085 meth_trns_rumB 23S r 77.3 2.9 6.2E-05 41.8 4.1 18 59-76 235-252 (374)
203 KOG2798 Putative trehalase [Ca 76.3 66 0.0014 31.7 12.8 66 192-287 274-339 (369)
204 PRK13699 putative methylase; P 74.5 5.8 0.00012 36.8 5.1 21 194-214 52-72 (227)
205 TIGR00095 RNA methyltransferas 73.8 3.2 6.9E-05 37.3 3.1 42 58-115 50-91 (189)
206 COG1189 Predicted rRNA methyla 73.7 3.4 7.3E-05 38.8 3.3 38 56-109 78-115 (245)
207 PF00398 RrnaAD: Ribosomal RNA 72.2 12 0.00025 35.4 6.7 22 57-78 30-51 (262)
208 PRK05031 tRNA (uracil-5-)-meth 72.2 8.2 0.00018 38.3 5.9 19 59-77 208-226 (362)
209 TIGR01444 fkbM_fam methyltrans 72.1 5.7 0.00012 33.1 4.1 41 60-115 1-41 (143)
210 COG2521 Predicted archaeal met 71.7 4.8 0.0001 37.9 3.8 109 56-216 133-247 (287)
211 COG0144 Sun tRNA and rRNA cyto 67.6 24 0.00051 35.1 8.0 132 58-218 157-292 (355)
212 TIGR02143 trmA_only tRNA (urac 67.0 6.5 0.00014 38.9 3.9 17 60-76 200-216 (353)
213 PF07091 FmrO: Ribosomal RNA m 63.5 5.4 0.00012 37.7 2.4 36 56-106 104-139 (251)
214 PRK11783 rlmL 23S rRNA m(2)G24 62.3 40 0.00087 36.6 9.2 20 58-77 191-210 (702)
215 KOG3115 Methyltransferase-like 60.7 4.2 9.2E-05 37.4 1.1 18 58-75 61-78 (249)
216 KOG3420 Predicted RNA methylas 60.2 5.9 0.00013 34.7 1.9 20 56-75 47-66 (185)
217 PF07757 AdoMet_MTase: Predict 59.9 5.2 0.00011 33.0 1.4 21 56-76 57-77 (112)
218 COG0742 N6-adenine-specific me 57.9 54 0.0012 29.7 7.7 22 57-78 43-64 (187)
219 COG1041 Predicted DNA modifica 57.4 36 0.00078 33.8 7.0 111 58-215 198-311 (347)
220 COG4627 Uncharacterized protei 57.2 3.6 7.7E-05 36.3 0.1 53 129-217 37-89 (185)
221 PF03141 Methyltransf_29: Puta 55.7 28 0.00061 36.1 6.2 130 13-212 332-465 (506)
222 PF09445 Methyltransf_15: RNA 53.2 7.8 0.00017 34.3 1.5 17 60-76 2-18 (163)
223 PF01596 Methyltransf_3: O-met 52.8 9.4 0.0002 34.9 2.1 20 57-76 45-64 (205)
224 PRK00536 speE spermidine synth 52.6 53 0.0011 31.3 7.2 34 56-106 71-104 (262)
225 PF02475 Met_10: Met-10+ like- 51.4 12 0.00026 34.1 2.5 45 57-116 101-145 (200)
226 PRK00050 16S rRNA m(4)C1402 me 51.2 52 0.0011 31.9 7.0 34 184-217 206-239 (296)
227 COG5124 Protein predicted to b 50.6 11 0.00023 33.8 1.9 36 230-265 40-75 (209)
228 PF03962 Mnd1: Mnd1 family; I 49.4 11 0.00023 34.1 1.8 34 233-266 30-63 (188)
229 PF10672 Methyltrans_SAM: S-ad 49.3 27 0.00059 33.7 4.7 110 58-215 124-239 (286)
230 KOG0820 Ribosomal RNA adenine 48.7 56 0.0012 31.6 6.5 52 56-108 57-120 (315)
231 PF01269 Fibrillarin: Fibrilla 47.6 1.2E+02 0.0027 28.3 8.5 23 57-80 73-95 (229)
232 PRK11760 putative 23S rRNA C24 47.3 12 0.00026 37.1 1.9 32 57-105 211-242 (357)
233 PF01564 Spermine_synth: Sperm 44.3 36 0.00078 31.9 4.6 21 195-215 172-192 (246)
234 COG0421 SpeE Spermidine syntha 44.1 86 0.0019 30.2 7.2 19 195-213 171-189 (282)
235 PF02527 GidB: rRNA small subu 43.8 25 0.00054 31.6 3.3 96 60-215 51-149 (184)
236 PF04816 DUF633: Family of unk 43.6 12 0.00025 34.3 1.1 42 61-117 1-42 (205)
237 COG4798 Predicted methyltransf 43.3 57 0.0012 30.0 5.5 19 58-76 49-67 (238)
238 KOG3433 Protein involved in me 39.2 20 0.00044 32.2 1.9 36 230-265 39-74 (203)
239 COG1092 Predicted SAM-dependen 38.5 2.2E+02 0.0047 28.8 9.4 31 187-217 309-339 (393)
240 COG2384 Predicted SAM-dependen 38.2 51 0.0011 30.7 4.4 45 59-118 18-62 (226)
241 COG0275 Predicted S-adenosylme 37.6 35 0.00076 33.3 3.4 35 183-217 213-247 (314)
242 KOG1122 tRNA and rRNA cytosine 37.4 3E+02 0.0064 28.3 9.9 131 56-217 240-374 (460)
243 PF01555 N6_N4_Mtase: DNA meth 37.4 36 0.00079 30.2 3.4 27 191-217 33-59 (231)
244 COG0357 GidB Predicted S-adeno 36.9 36 0.00079 31.4 3.3 32 58-104 68-99 (215)
245 cd01842 SGNH_hydrolase_like_5 36.3 1.1E+02 0.0023 27.7 6.0 61 129-215 39-100 (183)
246 PF01189 Nol1_Nop2_Fmu: NOL1/N 34.3 41 0.00089 32.2 3.4 128 57-215 85-220 (283)
247 PF02268 TFIIA_gamma_N: Transc 33.6 44 0.00096 23.5 2.5 22 231-252 11-32 (49)
248 KOG2920 Predicted methyltransf 32.7 22 0.00048 34.2 1.2 19 58-76 117-135 (282)
249 PRK00050 16S rRNA m(4)C1402 me 31.6 41 0.00088 32.7 2.8 39 58-110 20-58 (296)
250 COG4076 Predicted RNA methylas 31.3 43 0.00094 30.6 2.7 20 59-78 34-53 (252)
251 PF09597 IGR: IGR protein moti 31.0 43 0.00092 24.3 2.2 27 183-209 13-39 (57)
252 PF14904 FAM86: Family of unkn 30.7 42 0.00091 27.2 2.3 31 301-331 67-99 (100)
253 KOG1596 Fibrillarin and relate 30.2 4.2E+02 0.0092 25.3 9.1 98 15-145 126-232 (317)
254 cd08788 CARD_NOD2_2_CARD15 Cas 30.1 59 0.0013 25.3 2.9 44 231-275 12-55 (81)
255 PF05958 tRNA_U5-meth_tr: tRNA 29.1 63 0.0014 32.0 3.8 18 60-77 199-216 (352)
256 KOG1501 Arginine N-methyltrans 28.7 46 0.001 34.2 2.7 23 56-78 65-87 (636)
257 smart00400 ZnF_CHCC zinc finge 28.4 47 0.001 23.4 2.0 21 59-79 22-42 (55)
258 PF02636 Methyltransf_28: Puta 28.3 47 0.001 31.0 2.6 22 57-78 18-39 (252)
259 PF09851 SHOCT: Short C-termin 27.9 53 0.0011 20.5 2.0 17 238-254 7-23 (31)
260 PF02375 JmjN: jmjN domain; I 27.2 27 0.00059 22.6 0.5 15 259-273 1-15 (34)
261 PHA00457 inhibitor of host bac 26.8 60 0.0013 23.8 2.3 29 255-284 26-58 (63)
262 TIGR00006 S-adenosyl-methyltra 25.8 1.2E+02 0.0027 29.5 5.1 34 184-217 210-243 (305)
263 PRK01747 mnmC bifunctional tRN 25.3 44 0.00096 35.8 2.1 24 56-79 56-79 (662)
264 PF01170 UPF0020: Putative RNA 25.1 78 0.0017 28.0 3.3 82 58-145 29-112 (179)
265 PF03269 DUF268: Caenorhabditi 24.8 74 0.0016 28.4 2.9 26 192-218 90-116 (177)
266 COG3963 Phospholipid N-methylt 24.0 95 0.0021 27.9 3.5 108 57-219 48-161 (194)
267 PRK10953 cysJ sulfite reductas 23.5 6.2E+02 0.013 27.1 10.2 46 193-250 468-514 (600)
268 COG4262 Predicted spermidine s 23.3 2.1E+02 0.0045 29.1 6.0 162 56-276 288-452 (508)
269 PF10357 Kin17_mid: Domain of 22.9 74 0.0016 27.0 2.5 25 178-202 10-34 (127)
270 TIGR00730 conserved hypothetic 22.3 1.5E+02 0.0032 26.4 4.6 41 231-274 137-177 (178)
271 COG2609 AceE Pyruvate dehydrog 20.9 4.4E+02 0.0096 29.0 8.2 129 181-328 199-341 (887)
272 PF08714 Fae: Formaldehyde-act 20.4 1.4E+02 0.003 26.3 3.8 27 229-255 77-103 (159)
273 PF11899 DUF3419: Protein of u 20.2 1.8E+02 0.004 29.2 5.2 56 128-219 282-339 (380)
274 PF01795 Methyltransf_5: MraW 20.1 75 0.0016 31.1 2.3 33 184-216 211-243 (310)
No 1
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=100.00 E-value=5.4e-94 Score=703.72 Aligned_cols=346 Identities=29% Similarity=0.500 Sum_probs=310.8
Q ss_pred ccc-eeeeccCCCCccchHHhhHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCcceEEEeecCCCCcccHHHHHHHHHH
Q 018250 4 DEV-VTFPMMGGDGTCSYAHNSQFQRGTVDAAKELVREAIVNKLDVGSYGYDNSYTVRIADLGCSVGPNTFISVQNIIEA 82 (359)
Q Consensus 4 ~~~-~~~~M~gG~g~~sY~~nS~~Q~~~~~~~~~~l~~ai~~~~~~~~~~~~~~~~~~IaDlGCs~G~nt~~~~~~ii~~ 82 (359)
|++ ++|||+||+|++||++||.+|+.++..++|+|+++|++.. .... +.++++|||||||+|+||+.+++.||++
T Consensus 13 m~~~~~l~M~gG~g~~SYa~nS~~Q~~~~~~~k~~leeai~~~~-~~~~---p~~~~~iaDlGcs~G~ntl~~vs~iI~~ 88 (386)
T PLN02668 13 MKLEKLLCMKGGKGEGSYANNSQAQALHARSMLHLLEETLDNVH-LNSS---PEVPFTAVDLGCSSGSNTIHIIDVIVKH 88 (386)
T ss_pred ceeccccccCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHhc-cccC---CCcceeEEEecCCCCccHHHHHHHHHHH
Confidence 445 7899999999999999999999999999999999998753 1211 1268999999999999999999999999
Q ss_pred HHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCC-----------------CcccccccCcccccCCCCCCceeEEEe
Q 018250 83 LEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPP-----------------RKYYAAGVPGSFHGRLFPKSTLHVVNS 145 (359)
Q Consensus 83 ~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~-----------------~~~~~~~vpgsfy~~l~p~~s~d~~~S 145 (359)
|+++|++.+.+.|++||+|||||+||||+||++|+. ++||++|||||||+||||++|+||+||
T Consensus 89 i~~~~~~~~~~~pe~qv~~nDLP~NDFNtlF~~L~~~~~~~~~~~~~~~~~~~~~~f~~gvpGSFY~RLfP~~Slh~~~S 168 (386)
T PLN02668 89 MSKRYESAGLDPPEFSAFFSDLPSNDFNTLFQLLPPLANYGGSMEECLAASGHRSYFAAGVPGSFYRRLFPARSIDVFHS 168 (386)
T ss_pred HHHHhhhcCCCCCcceEEecCCCCCCHHHHHhhchhhhhhhcchhhhccccCCCceEEEecCccccccccCCCceEEEEe
Confidence 999998766678999999999999999999999974 239999999999999999999999999
Q ss_pred cCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceeEEEeccCCCCCCCCC
Q 018250 146 FNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLMVFSLITGPSGIPFAD 225 (359)
Q Consensus 146 ~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lvl~~~g~~~~~~~~~ 225 (359)
++||||||++|+.+.|+.+++||||+|||++++|+|.+||++||++||..||++|++||+|||+||++++||++.++..+
T Consensus 169 s~slHWLS~vP~~l~d~~s~~~Nkg~iyi~~~s~~v~~aY~~Qf~~D~~~FL~~Ra~ELvpGG~mvl~~~Gr~~~~~~~~ 248 (386)
T PLN02668 169 AFSLHWLSQVPESVTDKRSAAYNKGRVFIHGASESTANAYKRQFQADLAGFLRARAQEMKRGGAMFLVCLGRTSVDPTDQ 248 (386)
T ss_pred eccceecccCchhhccCCcccccCCceEecCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCcEEEEEEecCCCCCcccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999988666555
Q ss_pred cchhHHHHH-HHHHHHHHHHcCCCChhhhccCCccccCCCHHHHHHHHHhCCceeEeEEEEeecCCC-CC--C----CCh
Q 018250 226 TVQGATYNF-LGSCLWDLAKMGVISEEKARTFNVPAYFPYVEELESLIQRNGHFAMERMQQLDQPMR-HK--T----FPA 297 (359)
Q Consensus 226 ~~~~~~~~~-l~~al~~lv~eGli~~e~~d~f~~P~y~ps~~E~~~~i~~~G~F~i~~le~~~~~~~-~~--~----~~~ 297 (359)
...+.+|+. +.++|++||.||+|++||+|+||+|+|+||.+|++++|+++|+|+|+++|.++...+ +. + ..+
T Consensus 249 ~~~~~~~~~~l~~al~dlv~eGlI~eek~dsFniP~Y~ps~eEv~~~Ie~~gsF~I~~le~~~~~~~~~~~~~~d~~~~g 328 (386)
T PLN02668 249 GGAGLLFGTHFQDAWDDLVQEGLVTSEKRDSFNIPVYAPSLQDFKEVVEANGSFAIDKLEVFKGGSPLVVNEPDDAAEVG 328 (386)
T ss_pred CchhHHHHHHHHHHHHHHHHcCCCCHHHHhcccCcccCCCHHHHHHHHhhcCCEEeeeeEEeeccCcccccCcccHHHHH
Confidence 435566776 999999999999999999999999999999999999999999999999999874322 11 1 124
Q ss_pred hHHHHHHHHHhhhhhhhccCHHHHHHHHHHHHHHHHHHhhhhhcCCcceEEEEEEEE
Q 018250 298 QFYLSHLRAVLEGLIGKHFGEELLENIFNHINTKEAEILSIHNGKLHKEIEVFVVLK 354 (359)
Q Consensus 298 ~~v~~~iRa~~~~~l~~~~~e~i~delf~r~~~~~~~~~~~~~~~~~~~~~~~~~l~ 354 (359)
..+++++||++||++.+|||++++|+||+||+++++++++... +..++++++|+|.
T Consensus 329 ~~~a~~~RA~~E~ll~~HFG~~i~D~lF~r~~~~v~~~~~~~~-~~~~~~~~~~sL~ 384 (386)
T PLN02668 329 RAMANSCRSVAGVLVDAHIGEELSNELFLRVERRATSHAKELL-EKLQFFHIVASLS 384 (386)
T ss_pred HHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhc-ccCceEEEEEEEe
Confidence 5789999999999999999999999999999999999888642 5578888888885
No 2
>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.
Probab=100.00 E-value=1.2e-87 Score=654.97 Aligned_cols=314 Identities=40% Similarity=0.701 Sum_probs=261.5
Q ss_pred HHHHHHhhhccCCCCCCCCcceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCC-CCCCCceEEecCCCCCchHHHHHhC
Q 018250 38 VREAIVNKLDVGSYGYDNSYTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLS-LPVPDFQVFFNDHTENDFNTLFRTL 116 (359)
Q Consensus 38 l~~ai~~~~~~~~~~~~~~~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~-~~~p~~~v~~nDLp~NDFn~lf~~l 116 (359)
+++||.+++.... .+++++|||||||+|+||+.+++.||++|+++|++.+ .++|+|||||||||+||||+||++|
T Consensus 1 ~~~ai~~~~~~~~----~~~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l 76 (334)
T PF03492_consen 1 LEEAIKELYNSSN----NPKPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSL 76 (334)
T ss_dssp -HHHHHHHHHSTT----TTTEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCH
T ss_pred ChHHHHHHHhcCC----CCCceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhC
Confidence 4677777653332 4789999999999999999999999999999998765 6789999999999999999999999
Q ss_pred CC--------CcccccccCcccccCCCCCCceeEEEecCcccccCCCCcccccccccccCCCceeec-CCCHHHHHHHHH
Q 018250 117 PP--------RKYYAAGVPGSFHGRLFPKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCT-RFMKGVHETFQA 187 (359)
Q Consensus 117 ~~--------~~~~~~~vpgsfy~~l~p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~-~~~~~~~~~y~~ 187 (359)
+. +.||++|||||||+||||++|+||+||++||||||++|+.+.++.+++||||+||++ +++++|.+||++
T Consensus 77 ~~~~~~~~~~~~~f~~gvpgSFy~rLfP~~Svh~~~Ss~alHWLS~vP~~l~~~~~~~~Nkg~i~~~~~~~~~v~~ay~~ 156 (334)
T PF03492_consen 77 PSFQQSLKKFRNYFVSGVPGSFYGRLFPSNSVHFGHSSYALHWLSQVPEELVDKSSPAWNKGNIYISRTSPPEVAKAYAK 156 (334)
T ss_dssp HHHHHHHHHTTSEEEEEEES-TTS--S-TT-EEEEEEES-TTB-SSS-CCCCTTTSTTTSTTTSSSSTTS-HHHHHHHHH
T ss_pred hhhhhccCCCceEEEEecCchhhhccCCCCceEEEEEechhhhcccCCcccccccccccccCcEEEecCCCHHHHHHHHH
Confidence 85 479999999999999999999999999999999999999999999999999999998 679999999999
Q ss_pred HHHHHHHHHHHHHHHhhccCceeEEEeccCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCChhhhccCCccccCCCHHH
Q 018250 188 QFRSDFESILNARAEELVPGGLMVFSLITGPSGIPFADTVQGATYNFLGSCLWDLAKMGVISEEKARTFNVPAYFPYVEE 267 (359)
Q Consensus 188 Q~~~D~~~fL~~Ra~EL~pGG~lvl~~~g~~~~~~~~~~~~~~~~~~l~~al~~lv~eGli~~e~~d~f~~P~y~ps~~E 267 (359)
||++||.+||++||+||+|||+||++++|+++.++.+. +.+.+|++|+++|++||.||+|+++++|+||+|+|+||.+|
T Consensus 157 Qf~~D~~~FL~~Ra~ELv~GG~mvl~~~gr~~~~~~~~-~~~~~~~~l~~~l~dMv~eGlI~~ek~dsfniP~Y~ps~eE 235 (334)
T PF03492_consen 157 QFQKDFSSFLKARAEELVPGGRMVLTFLGRDEEDPSST-GSCMLWDLLADALRDMVAEGLISEEKVDSFNIPIYFPSPEE 235 (334)
T ss_dssp HHHHHHHHHHHHHHHHEEEEEEEEEEEEE-STSSTTST-TCCCHHHHHHHHHHHHHHTTSS-HCCCCTG--SBB---HHH
T ss_pred HHHHHHHHHHHHhhheeccCcEEEEEEeeccccccccC-CcchHHHHHHHHHHHHHHcCCcCHHHhhceeCCccCCCHHH
Confidence 99999999999999999999999999999998554433 34568999999999999999999999999999999999999
Q ss_pred HHHHHHhCCceeEeEEEEeecCCCCCC----------CChhHHHHHHHHHhhhhhhhccCHHHHHHHHHHHHHHHHHHhh
Q 018250 268 LESLIQRNGHFAMERMQQLDQPMRHKT----------FPAQFYLSHLRAVLEGLIGKHFGEELLENIFNHINTKEAEILS 337 (359)
Q Consensus 268 ~~~~i~~~G~F~i~~le~~~~~~~~~~----------~~~~~v~~~iRa~~~~~l~~~~~e~i~delf~r~~~~~~~~~~ 337 (359)
++++|+++|+|+|+++|.++.+.+..+ ..++.+++++||+.+|++.+|||++++|+||+||+++++++++
T Consensus 236 v~~~I~~~gsF~I~~le~~~~~~~~~~~~~~~~~d~~~~~~~~~~~iRA~~e~~l~~hfG~ei~D~LF~r~~~~v~~~~~ 315 (334)
T PF03492_consen 236 VRAIIEEEGSFEIEKLELFEQPWWSVPDDESWKEDAKEYARNVANYIRAVFEPLLKAHFGEEIMDELFERYAKKVAEHLE 315 (334)
T ss_dssp HHHHHHHHTSEEEEEEEEEEEETCCTCTTT-STTTHHCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCEEEEEEEEEeecccccchhhhcccchhhhHHHHHHhHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999974333211 2467899999999999999999999999999999999999998
Q ss_pred hhhcCCcceEEEEEEEEec
Q 018250 338 IHNGKLHKEIEVFVVLKRI 356 (359)
Q Consensus 338 ~~~~~~~~~~~~~~~l~r~ 356 (359)
....+.+++++++++|+||
T Consensus 316 ~~~~~~~~~~~i~~~L~Rk 334 (334)
T PF03492_consen 316 KEKSRNMKFVNIVVSLTRK 334 (334)
T ss_dssp HTHTT-BEEEEEEEEEEE-
T ss_pred HhhccCCCcEEEEEEEeeC
Confidence 7655668999999999997
No 3
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=99.68 E-value=2.6e-15 Score=141.31 Aligned_cols=226 Identities=17% Similarity=0.179 Sum_probs=147.1
Q ss_pred ccchHHhhHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCcceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCC
Q 018250 17 TCSYAHNSQFQRGTVDAAKELVREAIVNKLDVGSYGYDNSYTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPD 96 (359)
Q Consensus 17 ~~sY~~nS~~Q~~~~~~~~~~l~~ai~~~~~~~~~~~~~~~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~ 96 (359)
+..|.+++..|.+.+..+++.+ . .....+|+|+|||+|..+..+. +++ |.
T Consensus 4 ~~~y~~~~~~~~~~~~~ll~~l----------~-----~~~~~~vLDlGcG~G~~~~~l~--------~~~-------p~ 53 (255)
T PRK14103 4 PDVYLAFADHRGRPFYDLLARV----------G-----AERARRVVDLGCGPGNLTRYLA--------RRW-------PG 53 (255)
T ss_pred HHHHHHHHhHhhCHHHHHHHhC----------C-----CCCCCEEEEEcCCCCHHHHHHH--------HHC-------CC
Confidence 3579999999988775544333 1 1345899999999999887663 332 45
Q ss_pred ceEEecCCCCCchHHHHHhCCCCcccccccCcccccCCCCCCceeEEEecCcccccCCCCcccccccccccCCCceeecC
Q 018250 97 FQVFFNDHTENDFNTLFRTLPPRKYYAAGVPGSFHGRLFPKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTR 176 (359)
Q Consensus 97 ~~v~~nDLp~NDFn~lf~~l~~~~~~~~~vpgsfy~~l~p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~ 176 (359)
.+|+..|+..++.... +.. .--|. .+++ +.+.|++++|+++|+.++||+.+
T Consensus 54 ~~v~gvD~s~~~~~~a-~~~--~~~~~---~~d~-~~~~~~~~fD~v~~~~~l~~~~d---------------------- 104 (255)
T PRK14103 54 AVIEALDSSPEMVAAA-RER--GVDAR---TGDV-RDWKPKPDTDVVVSNAALQWVPE---------------------- 104 (255)
T ss_pred CEEEEEECCHHHHHHH-Hhc--CCcEE---EcCh-hhCCCCCCceEEEEehhhhhCCC----------------------
Confidence 6899999976554332 211 11122 2455 34567889999999999999753
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceeEEEeccCCCCCCCCCcchhHHHHHHH--HHHHHHHHcCCCChhhhc
Q 018250 177 FMKGVHETFQAQFRSDFESILNARAEELVPGGLMVFSLITGPSGIPFADTVQGATYNFLG--SCLWDLAKMGVISEEKAR 254 (359)
Q Consensus 177 ~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lvl~~~g~~~~~~~~~~~~~~~~~~l~--~al~~lv~eGli~~e~~d 254 (359)
...+|+.-++.|+|||++++++.+.... + . ..+...+. ..|..... ..
T Consensus 105 ----------------~~~~l~~~~~~LkpgG~l~~~~~~~~~~-~----~-~~~~~~~~~~~~w~~~~~--------~~ 154 (255)
T PRK14103 105 ----------------HADLLVRWVDELAPGSWIAVQVPGNFDA-P----S-HAAVRALARREPWAKLLR--------DI 154 (255)
T ss_pred ----------------HHHHHHHHHHhCCCCcEEEEEcCCCcCC-h----h-HHHHHHHhccCchhHHhc--------cc
Confidence 2235666778999999999987653221 0 0 00111111 12322110 01
Q ss_pred cCCccccCCCHHHHHHHHHhCCceeEeEEEEeecCCCCCCCChhHHHHHHHHH-hhhhhhhccCHHHHHHHHHHHHHHHH
Q 018250 255 TFNVPAYFPYVEELESLIQRNGHFAMERMQQLDQPMRHKTFPAQFYLSHLRAV-LEGLIGKHFGEELLENIFNHINTKEA 333 (359)
Q Consensus 255 ~f~~P~y~ps~~E~~~~i~~~G~F~i~~le~~~~~~~~~~~~~~~v~~~iRa~-~~~~l~~~~~e~i~delf~r~~~~~~ 333 (359)
.+..+..+.+.+++.+++++.| |++...+..... .+ ...+.+..|+++. +.++++ .++++.++++.+.+.+.++
T Consensus 155 ~~~~~~~~~~~~~~~~~l~~aG-f~v~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~~l~ 229 (255)
T PRK14103 155 PFRVGAVVQTPAGYAELLTDAG-CKVDAWETTYVH-QL--TGEDPVLDWITGTALRPVRE-RLSDDSWEQFRAELIPLLR 229 (255)
T ss_pred ccccCcCCCCHHHHHHHHHhCC-CeEEEEeeeeee-eC--CCchhhhhhhhccchhhhhh-hCCHHHHHHHHHHHHHHHH
Confidence 1234556789999999999999 987665553221 22 2345788899865 467777 6999999999999999888
Q ss_pred HHh
Q 018250 334 EIL 336 (359)
Q Consensus 334 ~~~ 336 (359)
+..
T Consensus 230 ~~~ 232 (255)
T PRK14103 230 EAY 232 (255)
T ss_pred HHC
Confidence 763
No 4
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=99.67 E-value=7.6e-15 Score=138.00 Aligned_cols=248 Identities=15% Similarity=0.170 Sum_probs=155.4
Q ss_pred ccchHHhhHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCcceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCC
Q 018250 17 TCSYAHNSQFQRGTVDAAKELVREAIVNKLDVGSYGYDNSYTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPD 96 (359)
Q Consensus 17 ~~sY~~nS~~Q~~~~~~~~~~l~~ai~~~~~~~~~~~~~~~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~ 96 (359)
+..|++++..|.+....++..+ . .....+|+|+|||+|..+..++ +++ |.
T Consensus 6 ~~~Y~~~~~~~~~~~~~ll~~~----------~-----~~~~~~vLDiGcG~G~~~~~la--------~~~-------~~ 55 (258)
T PRK01683 6 PSLYLKFEDERTRPARDLLARV----------P-----LENPRYVVDLGCGPGNSTELLV--------ERW-------PA 55 (258)
T ss_pred HHHHHHHHHHhhcHHHHHHhhC----------C-----CcCCCEEEEEcccCCHHHHHHH--------HHC-------CC
Confidence 4679999998887765443322 1 1345799999999999988774 332 34
Q ss_pred ceEEecCCCCCchHHHHHhCCCCcccccccCcccccCCCCCCceeEEEecCcccccCCCCcccccccccccCCCceeecC
Q 018250 97 FQVFFNDHTENDFNTLFRTLPPRKYYAAGVPGSFHGRLFPKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTR 176 (359)
Q Consensus 97 ~~v~~nDLp~NDFn~lf~~l~~~~~~~~~vpgsfy~~l~p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~ 176 (359)
.+|+..|+...+....-+..+. --|.. +++. .+.|++++|+++|+.++||+.+
T Consensus 56 ~~v~gvD~s~~~i~~a~~~~~~-~~~~~---~d~~-~~~~~~~fD~v~~~~~l~~~~d---------------------- 108 (258)
T PRK01683 56 ARITGIDSSPAMLAEARSRLPD-CQFVE---ADIA-SWQPPQALDLIFANASLQWLPD---------------------- 108 (258)
T ss_pred CEEEEEECCHHHHHHHHHhCCC-CeEEE---Cchh-ccCCCCCccEEEEccChhhCCC----------------------
Confidence 6899999987665544433331 11222 3443 3457789999999999999643
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceeEEEeccCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCChhhhccC
Q 018250 177 FMKGVHETFQAQFRSDFESILNARAEELVPGGLMVFSLITGPSGIPFADTVQGATYNFLGSCLWDLAKMGVISEEKARTF 256 (359)
Q Consensus 177 ~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lvl~~~g~~~~~~~~~~~~~~~~~~l~~al~~lv~eGli~~e~~d~f 256 (359)
...+|+.-.+.|+|||++++++.+.... ..+. .++++....--...-...-
T Consensus 109 ----------------~~~~l~~~~~~LkpgG~~~~~~~~~~~~---------~~~~----~~~~~~~~~~w~~~~~~~~ 159 (258)
T PRK01683 109 ----------------HLELFPRLVSLLAPGGVLAVQMPDNLDE---------PSHV----LMREVAENGPWEQNLPDRG 159 (258)
T ss_pred ----------------HHHHHHHHHHhcCCCcEEEEECCCCCCC---------HHHH----HHHHHHccCchHHHhcccc
Confidence 2236777788999999999986442211 0111 1222221110000000011
Q ss_pred CccccCCCHHHHHHHHHhCCceeEeEEEEeecCCCCCCCChhHHHHHHHHH-hhhhhhhccCHHHHHHHHHHHHHHHHHH
Q 018250 257 NVPAYFPYVEELESLIQRNGHFAMERMQQLDQPMRHKTFPAQFYLSHLRAV-LEGLIGKHFGEELLENIFNHINTKEAEI 335 (359)
Q Consensus 257 ~~P~y~ps~~E~~~~i~~~G~F~i~~le~~~~~~~~~~~~~~~v~~~iRa~-~~~~l~~~~~e~i~delf~r~~~~~~~~ 335 (359)
..+.++++.+++...+...| +.++..+.. ....+ .+++.+.+|+++. +.+++. +++++..++|.++|.+.+++.
T Consensus 160 ~~~~~~~~~~~~~~~l~~~g-~~v~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~f~~~~~~~~~~~ 234 (258)
T PRK01683 160 ARRAPLPPPHAYYDALAPAA-CRVDIWHTT-YYHPM--PSAQAIVEWVKGTGLRPFLD-PLTESEQAAFLAAYLARIAEA 234 (258)
T ss_pred ccCcCCCCHHHHHHHHHhCC-Cceeeeeee-eeeec--CCchhhhhhhhhccHHHHHh-hCCHHHHHHHHHHHHHHHHHH
Confidence 12347789999999999999 776554443 22334 3467899999974 577775 699999999999999999876
Q ss_pred hh-hhhc-CCcceEEEEEEEEe
Q 018250 336 LS-IHNG-KLHKEIEVFVVLKR 355 (359)
Q Consensus 336 ~~-~~~~-~~~~~~~~~~~l~r 355 (359)
.. .-.. -...+.-++++-+|
T Consensus 235 ~~~~~~g~~~~~~~~~~~~~~~ 256 (258)
T PRK01683 235 YPLQADGKVLLAFPRLFIVARR 256 (258)
T ss_pred CCCCCCCcEEcccceEEEEEEe
Confidence 32 1111 11234455666555
No 5
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=99.65 E-value=2.4e-15 Score=140.89 Aligned_cols=211 Identities=15% Similarity=0.168 Sum_probs=142.6
Q ss_pred CCccchHHhhHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCcceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCC
Q 018250 15 DGTCSYAHNSQFQRGTVDAAKELVREAIVNKLDVGSYGYDNSYTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPV 94 (359)
Q Consensus 15 ~g~~sY~~nS~~Q~~~~~~~~~~l~~ai~~~~~~~~~~~~~~~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~ 94 (359)
....+|++++.+|+.+...+...+. .....+|+|+|||+|.+|..+. +.
T Consensus 15 ~aa~~Y~~~~~~q~~~a~~l~~~l~---------------~~~~~~vLDiGcG~G~~~~~l~--------~~-------- 63 (251)
T PRK10258 15 RAAAHYEQHAELQRQSADALLAMLP---------------QRKFTHVLDAGCGPGWMSRYWR--------ER-------- 63 (251)
T ss_pred HHHHhHhHHHHHHHHHHHHHHHhcC---------------ccCCCeEEEeeCCCCHHHHHHH--------Hc--------
Confidence 3456899999999998877665542 1235689999999998877652 21
Q ss_pred CCceEEecCCCCCchHHHHHhCCCCcccccccCcccccCCCCCCceeEEEecCcccccCCCCcccccccccccCCCceee
Q 018250 95 PDFQVFFNDHTENDFNTLFRTLPPRKYYAAGVPGSFHGRLFPKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKC 174 (359)
Q Consensus 95 p~~~v~~nDLp~NDFn~lf~~l~~~~~~~~~vpgsfy~~l~p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~ 174 (359)
..+++..|+...+-...-+..+ ...|+. +++....+|++++|+|+|+.++||+.+
T Consensus 64 -~~~v~~~D~s~~~l~~a~~~~~-~~~~~~---~d~~~~~~~~~~fD~V~s~~~l~~~~d-------------------- 118 (251)
T PRK10258 64 -GSQVTALDLSPPMLAQARQKDA-ADHYLA---GDIESLPLATATFDLAWSNLAVQWCGN-------------------- 118 (251)
T ss_pred -CCeEEEEECCHHHHHHHHhhCC-CCCEEE---cCcccCcCCCCcEEEEEECchhhhcCC--------------------
Confidence 2489999998765544333322 112333 466565689999999999999999653
Q ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceeEEEeccCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCChhhhc
Q 018250 175 TRFMKGVHETFQAQFRSDFESILNARAEELVPGGLMVFSLITGPSGIPFADTVQGATYNFLGSCLWDLAKMGVISEEKAR 254 (359)
Q Consensus 175 ~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lvl~~~g~~~~~~~~~~~~~~~~~~l~~al~~lv~eGli~~e~~d 254 (359)
...+|+.-.+-|+|||++++++++.++ +..+.++|..+-
T Consensus 119 ------------------~~~~l~~~~~~Lk~gG~l~~~~~~~~~------------~~el~~~~~~~~----------- 157 (251)
T PRK10258 119 ------------------LSTALRELYRVVRPGGVVAFTTLVQGS------------LPELHQAWQAVD----------- 157 (251)
T ss_pred ------------------HHHHHHHHHHHcCCCeEEEEEeCCCCc------------hHHHHHHHHHhc-----------
Confidence 234666778999999999999998765 234555665431
Q ss_pred cCCccccCCCHHHHHHHHHhCCceeEeEEEEeecCCCCCCCChhHHHHHHHHHhhhhh-----hhccCHHHHHHHHHHH
Q 018250 255 TFNVPAYFPYVEELESLIQRNGHFAMERMQQLDQPMRHKTFPAQFYLSHLRAVLEGLI-----GKHFGEELLENIFNHI 328 (359)
Q Consensus 255 ~f~~P~y~ps~~E~~~~i~~~G~F~i~~le~~~~~~~~~~~~~~~v~~~iRa~~~~~l-----~~~~~e~i~delf~r~ 328 (359)
......-+++.+|+...+...| +++ ..+.+ ...+ .++..+..++|....... ...++...+.++.+.|
T Consensus 158 ~~~~~~~~~~~~~l~~~l~~~~-~~~-~~~~~--~~~f--~~~~~~l~~lk~~G~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (251)
T PRK10258 158 ERPHANRFLPPDAIEQALNGWR-YQH-HIQPI--TLWF--DDALSAMRSLKGIGATHLHEGRDPRILTRSQLQRLQLAW 230 (251)
T ss_pred cCCccccCCCHHHHHHHHHhCC-cee-eeeEE--EEEC--CCHHHHHHHHHHhCCCCCCCCCCCCCCcHHHHHHHHHhc
Confidence 1122345789999999998777 654 33333 3335 357889999998665433 2346676666666655
No 6
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=99.60 E-value=1.1e-13 Score=127.30 Aligned_cols=218 Identities=18% Similarity=0.257 Sum_probs=150.0
Q ss_pred CccchHHhhHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCcceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCC
Q 018250 16 GTCSYAHNSQFQRGTVDAAKELVREAIVNKLDVGSYGYDNSYTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVP 95 (359)
Q Consensus 16 g~~sY~~nS~~Q~~~~~~~~~~l~~ai~~~~~~~~~~~~~~~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p 95 (359)
...+|++.+..|+.+...+.+.+... . ...+.+|+|+|||+|..+..+. +. .|
T Consensus 5 ~~~~y~~~~~~q~~~~~~l~~~~~~~-------~-----~~~~~~vLDlG~G~G~~~~~l~--------~~-------~~ 57 (240)
T TIGR02072 5 AAKTYDRHAKIQREMAKRLLALLKEK-------G-----IFIPASVLDIGCGTGYLTRALL--------KR-------FP 57 (240)
T ss_pred hhhchhHHHHHHHHHHHHHHHHhhhh-------c-----cCCCCeEEEECCCccHHHHHHH--------Hh-------CC
Confidence 45689999999999888877776531 1 1335789999999999888774 22 24
Q ss_pred CceEEecCCCCCchHHHHHhCCCCcccccccCcccccCCCCCCceeEEEecCcccccCCCCcccccccccccCCCceeec
Q 018250 96 DFQVFFNDHTENDFNTLFRTLPPRKYYAAGVPGSFHGRLFPKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCT 175 (359)
Q Consensus 96 ~~~v~~nDLp~NDFn~lf~~l~~~~~~~~~vpgsfy~~l~p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~ 175 (359)
..+++..|+...+.+...+.++++-.++. +++.+..+|++++|+++|+.++||+..
T Consensus 58 ~~~~~~~D~~~~~~~~~~~~~~~~~~~~~---~d~~~~~~~~~~fD~vi~~~~l~~~~~--------------------- 113 (240)
T TIGR02072 58 QAEFIALDISAGMLAQAKTKLSENVQFIC---GDAEKLPLEDSSFDLIVSNLALQWCDD--------------------- 113 (240)
T ss_pred CCcEEEEeChHHHHHHHHHhcCCCCeEEe---cchhhCCCCCCceeEEEEhhhhhhccC---------------------
Confidence 56799999987666655555443212332 466677789999999999999999642
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceeEEEeccCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCChhhhcc
Q 018250 176 RFMKGVHETFQAQFRSDFESILNARAEELVPGGLMVFSLITGPSGIPFADTVQGATYNFLGSCLWDLAKMGVISEEKART 255 (359)
Q Consensus 176 ~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lvl~~~g~~~~~~~~~~~~~~~~~~l~~al~~lv~eGli~~e~~d~ 255 (359)
...+|+...+-|+|||.+++..++.++ +..+...+..
T Consensus 114 -----------------~~~~l~~~~~~L~~~G~l~~~~~~~~~------------~~~~~~~~~~-------------- 150 (240)
T TIGR02072 114 -----------------LSQALSELARVLKPGGLLAFSTFGPGT------------LHELRQSFGQ-------------- 150 (240)
T ss_pred -----------------HHHHHHHHHHHcCCCcEEEEEeCCccC------------HHHHHHHHHH--------------
Confidence 334777889999999999999776543 1222223221
Q ss_pred CCccccCCCHHHHHHHHHhCCceeEeEEEEeecCCCCCCCChhHHHHHHHHHhh-hhhhhccCHHHHHHHHHHHHHHHH
Q 018250 256 FNVPAYFPYVEELESLIQRNGHFAMERMQQLDQPMRHKTFPAQFYLSHLRAVLE-GLIGKHFGEELLENIFNHINTKEA 333 (359)
Q Consensus 256 f~~P~y~ps~~E~~~~i~~~G~F~i~~le~~~~~~~~~~~~~~~v~~~iRa~~~-~~l~~~~~e~i~delf~r~~~~~~ 333 (359)
....+++.+++.+++... |....++....+..+ .++..+..+++.... ......++.+...++.+.|.+...
T Consensus 151 --~~~~~~~~~~~~~~l~~~--f~~~~~~~~~~~~~~--~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (240)
T TIGR02072 151 --HGLRYLSLDELKALLKNS--FELLTLEEELITLSF--DDPLDVLRHLKKTGANGLSSGRTSRKQLKAFLERYEQEFQ 223 (240)
T ss_pred --hccCCCCHHHHHHHHHHh--cCCcEEEEEEEEEeC--CCHHHHHHHHHHhccCcCCCCCCCHHHHHHHHHHHHHhhc
Confidence 112568899999999876 877666654434444 356788888888554 333334778778888888766654
No 7
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=99.39 E-value=6.4e-12 Score=113.78 Aligned_cols=223 Identities=16% Similarity=0.225 Sum_probs=147.6
Q ss_pred CcceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCCCcccccccCcccccCCC
Q 018250 56 SYTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPPRKYYAAGVPGSFHGRLF 135 (359)
Q Consensus 56 ~~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~~~~~vpgsfy~~l~ 135 (359)
..+.+|.|||||+|..|.+++ +++ |..++..-|-..-|.....+.+|+.+ |..|- ....-
T Consensus 29 ~~~~~v~DLGCGpGnsTelL~--------~Rw-------P~A~i~GiDsS~~Mla~Aa~rlp~~~-f~~aD----l~~w~ 88 (257)
T COG4106 29 ERPRRVVDLGCGPGNSTELLA--------RRW-------PDAVITGIDSSPAMLAKAAQRLPDAT-FEEAD----LRTWK 88 (257)
T ss_pred cccceeeecCCCCCHHHHHHH--------HhC-------CCCeEeeccCCHHHHHHHHHhCCCCc-eeccc----HhhcC
Confidence 457899999999999999985 564 67799999998888877777776422 22211 13446
Q ss_pred CCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceeEEEec
Q 018250 136 PKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLMVFSLI 215 (359)
Q Consensus 136 p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lvl~~~ 215 (359)
|+...|++||+.+||||.+-|. .|..--.+|.|||.|.+.++
T Consensus 89 p~~~~dllfaNAvlqWlpdH~~--------------------------------------ll~rL~~~L~Pgg~LAVQmP 130 (257)
T COG4106 89 PEQPTDLLFANAVLQWLPDHPE--------------------------------------LLPRLVSQLAPGGVLAVQMP 130 (257)
T ss_pred CCCccchhhhhhhhhhccccHH--------------------------------------HHHHHHHhhCCCceEEEECC
Confidence 8999999999999999765443 23344578999999999997
Q ss_pred cCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCChhhhccCC-ccccCCCHHHHHHHHHhCCceeEeEEEEe-ecCCCCC
Q 018250 216 TGPSGIPFADTVQGATYNFLGSCLWDLAKMGVISEEKARTFN-VPAYFPYVEELESLIQRNGHFAMERMQQL-DQPMRHK 293 (359)
Q Consensus 216 g~~~~~~~~~~~~~~~~~~l~~al~~lv~eGli~~e~~d~f~-~P~y~ps~~E~~~~i~~~G~F~i~~le~~-~~~~~~~ 293 (359)
+.-++ .+ +.++. +.++++=- +.++.+.. .----+++.-|-+++...+ -+|+--++. .+++.
T Consensus 131 dN~de--ps-------H~~mr----~~A~~~p~-~~~l~~~~~~r~~v~s~a~Yy~lLa~~~-~rvDiW~T~Y~h~l~-- 193 (257)
T COG4106 131 DNLDE--PS-------HRLMR----ETADEAPF-AQELGGRGLTRAPLPSPAAYYELLAPLA-CRVDIWHTTYYHQLP-- 193 (257)
T ss_pred CccCc--hh-------HHHHH----HHHhcCch-hhhhCccccccCCCCCHHHHHHHhCccc-ceeeeeeeeccccCC--
Confidence 64432 11 23333 22222210 11111110 1123578899999998776 666555543 23322
Q ss_pred CCChhHHHHHHHH-HhhhhhhhccCHHHHHHHHHHHHHHHHHHhhhh-h-cCCcceEEEEEEEEec
Q 018250 294 TFPAQFYLSHLRA-VLEGLIGKHFGEELLENIFNHINTKEAEILSIH-N-GKLHKEIEVFVVLKRI 356 (359)
Q Consensus 294 ~~~~~~v~~~iRa-~~~~~l~~~~~e~i~delf~r~~~~~~~~~~~~-~-~~~~~~~~~~~~l~r~ 356 (359)
+.+.+..|+++ .+.|++.. ++++-...|.++|..+++++.-.. + +-...+.-+|||-+|+
T Consensus 194 --~a~aIvdWvkgTgLrP~L~~-L~e~~~~~FL~~Y~~~l~~aYP~~~dGr~ll~FpRlFiVA~~~ 256 (257)
T COG4106 194 --GADAIVDWVKGTGLRPYLDR-LDEEERQRFLDRYLALLAEAYPPRADGRVLLAFPRLFIVATRG 256 (257)
T ss_pred --Cccchhhheeccccceeccc-cCHHHHHHHHHHHHHHHHHhCCCccCCcEEeecceEEEEEecC
Confidence 35689999998 66799985 999999999999999998764331 1 1112356677777664
No 8
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.32 E-value=7.5e-12 Score=116.56 Aligned_cols=168 Identities=18% Similarity=0.200 Sum_probs=113.5
Q ss_pred cceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCC-CcccccccCcccccCCC
Q 018250 57 YTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPP-RKYYAAGVPGSFHGRLF 135 (359)
Q Consensus 57 ~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~-~~~~~~~vpgsfy~~l~ 135 (359)
...+|||+|||||-.|+.++ +.. ++.+|+..|..++|.+..-+...+ ...-+.-|-|++.+.+|
T Consensus 51 ~g~~vLDva~GTGd~a~~~~--------k~~-------g~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dAe~LPf 115 (238)
T COG2226 51 PGDKVLDVACGTGDMALLLA--------KSV-------GTGEVVGLDISESMLEVAREKLKKKGVQNVEFVVGDAENLPF 115 (238)
T ss_pred CCCEEEEecCCccHHHHHHH--------Hhc-------CCceEEEEECCHHHHHHHHHHhhccCccceEEEEechhhCCC
Confidence 46999999999999999884 433 256999999999999887776654 11102223358989999
Q ss_pred CCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceeEEEec
Q 018250 136 PKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLMVFSLI 215 (359)
Q Consensus 136 p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lvl~~~ 215 (359)
|++|+|++.+++.||++.+.+.. |+--++.|||||++++.=+
T Consensus 116 ~D~sFD~vt~~fglrnv~d~~~a--------------------------------------L~E~~RVlKpgG~~~vle~ 157 (238)
T COG2226 116 PDNSFDAVTISFGLRNVTDIDKA--------------------------------------LKEMYRVLKPGGRLLVLEF 157 (238)
T ss_pred CCCccCEEEeeehhhcCCCHHHH--------------------------------------HHHHHHhhcCCeEEEEEEc
Confidence 99999999999999998876653 4557899999999999888
Q ss_pred cCCCCCCCCCcchhHHHHHHHH-HHHHHHHcCCCC--hhhhc-cCCccccCCCHHHHHHHHHhCCceeEeEEE
Q 018250 216 TGPSGIPFADTVQGATYNFLGS-CLWDLAKMGVIS--EEKAR-TFNVPAYFPYVEELESLIQRNGHFAMERMQ 284 (359)
Q Consensus 216 g~~~~~~~~~~~~~~~~~~l~~-al~~lv~eGli~--~e~~d-~f~~P~y~ps~~E~~~~i~~~G~F~i~~le 284 (359)
..++..+.... ....... ++--+. .+++ .+.+. -....--+|+.+++.+.+++.| |+...-+
T Consensus 158 ~~p~~~~~~~~----~~~~~~~~v~P~~g--~~~~~~~~~y~yL~eSi~~~p~~~~l~~~~~~~g-f~~i~~~ 223 (238)
T COG2226 158 SKPDNPVLRKA----YILYYFKYVLPLIG--KLVAKDAEAYEYLAESIRRFPDQEELKQMIEKAG-FEEVRYE 223 (238)
T ss_pred CCCCchhhHHH----HHHHHHHhHhhhhc--eeeecChHHHHHHHHHHHhCCCHHHHHHHHHhcC-ceEEeeE
Confidence 88754222111 1111111 111110 1111 11111 0123346899999999999999 9865533
No 9
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.29 E-value=8.5e-11 Score=111.33 Aligned_cols=166 Identities=14% Similarity=0.133 Sum_probs=102.9
Q ss_pred cceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCC------Cc-ccccccCcc
Q 018250 57 YTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPP------RK-YYAAGVPGS 129 (359)
Q Consensus 57 ~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~------~~-~~~~~vpgs 129 (359)
...+|+|+|||+|..+..+. +++ .|..+|+..|+..++....-+..+. .. .|+. ++
T Consensus 73 ~~~~VLDlGcGtG~~~~~la--------~~~------~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~---~d 135 (261)
T PLN02233 73 MGDRVLDLCCGSGDLAFLLS--------EKV------GSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIE---GD 135 (261)
T ss_pred CCCEEEEECCcCCHHHHHHH--------HHh------CCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEE---cc
Confidence 35799999999999887663 332 2345899999998887665433221 11 1333 46
Q ss_pred cccCCCCCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCce
Q 018250 130 FHGRLFPKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGL 209 (359)
Q Consensus 130 fy~~l~p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~ 209 (359)
..+..||++|+|++++++++||+.+ ...+|+.-++.|||||+
T Consensus 136 ~~~lp~~~~sfD~V~~~~~l~~~~d--------------------------------------~~~~l~ei~rvLkpGG~ 177 (261)
T PLN02233 136 ATDLPFDDCYFDAITMGYGLRNVVD--------------------------------------RLKAMQEMYRVLKPGSR 177 (261)
T ss_pred cccCCCCCCCEeEEEEecccccCCC--------------------------------------HHHHHHHHHHHcCcCcE
Confidence 6566689999999999999999642 23467778899999999
Q ss_pred eEEEeccCCCCCCCCCcchhHHHHH-HHHHHHHHH-HcCCCChhhhcc-CCccccCCCHHHHHHHHHhCCceeEeEEEE
Q 018250 210 MVFSLITGPSGIPFADTVQGATYNF-LGSCLWDLA-KMGVISEEKART-FNVPAYFPYVEELESLIQRNGHFAMERMQQ 285 (359)
Q Consensus 210 lvl~~~g~~~~~~~~~~~~~~~~~~-l~~al~~lv-~eGli~~e~~d~-f~~P~y~ps~~E~~~~i~~~G~F~i~~le~ 285 (359)
+++..++.++... ...+++. +...+.-+. .-|.- +.+.- ...--.+++.+|+.+.++++| |++.+...
T Consensus 178 l~i~d~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~--~~y~~l~~s~~~f~s~~el~~ll~~aG-F~~~~~~~ 248 (261)
T PLN02233 178 VSILDFNKSTQPF-----TTSMQEWMIDNVVVPVATGYGLA--KEYEYLKSSINEYLTGEELEKLALEAG-FSSAKHYE 248 (261)
T ss_pred EEEEECCCCCcHH-----HHHHHHHHHhhhhhHHHHHhCCh--HHHHHHHHHHHhcCCHHHHHHHHHHCC-CCEEEEEE
Confidence 9999888765311 0111111 111111010 01211 11100 000013789999999999999 98765444
No 10
>PLN02244 tocopherol O-methyltransferase
Probab=99.27 E-value=5.8e-10 Score=109.59 Aligned_cols=157 Identities=13% Similarity=0.125 Sum_probs=99.0
Q ss_pred cceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCC-----CcccccccCcccc
Q 018250 57 YTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPP-----RKYYAAGVPGSFH 131 (359)
Q Consensus 57 ~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~-----~~~~~~~vpgsfy 131 (359)
...+|+|+|||+|.++..+. +++ ..+|+..|+..++-...-+.... +-.|.. +++.
T Consensus 118 ~~~~VLDiGCG~G~~~~~La--------~~~--------g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~---~D~~ 178 (340)
T PLN02244 118 RPKRIVDVGCGIGGSSRYLA--------RKY--------GANVKGITLSPVQAARANALAAAQGLSDKVSFQV---ADAL 178 (340)
T ss_pred CCCeEEEecCCCCHHHHHHH--------Hhc--------CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEE---cCcc
Confidence 45789999999999998875 222 24788888877654433222111 112333 4666
Q ss_pred cCCCCCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceeE
Q 018250 132 GRLFPKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLMV 211 (359)
Q Consensus 132 ~~l~p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lv 211 (359)
+..||++++|+|+|..++|++.+ ...+|+.-.+-|+|||+++
T Consensus 179 ~~~~~~~~FD~V~s~~~~~h~~d--------------------------------------~~~~l~e~~rvLkpGG~lv 220 (340)
T PLN02244 179 NQPFEDGQFDLVWSMESGEHMPD--------------------------------------KRKFVQELARVAAPGGRII 220 (340)
T ss_pred cCCCCCCCccEEEECCchhccCC--------------------------------------HHHHHHHHHHHcCCCcEEE
Confidence 66789999999999999988532 2246777789999999999
Q ss_pred EEeccCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCChhhhccCCccccCCCHHHHHHHHHhCCceeEeEEEEe
Q 018250 212 FSLITGPSGIPFADTVQGATYNFLGSCLWDLAKMGVISEEKARTFNVPAYFPYVEELESLIQRNGHFAMERMQQL 286 (359)
Q Consensus 212 l~~~g~~~~~~~~~~~~~~~~~~l~~al~~lv~eGli~~e~~d~f~~P~y~ps~~E~~~~i~~~G~F~i~~le~~ 286 (359)
+......+..+.... +...-...+..+.. .+.+| .+.+.+|+.+++++.| |+..+.+.+
T Consensus 221 i~~~~~~~~~~~~~~----l~~~~~~~~~~i~~----------~~~~p-~~~s~~~~~~~l~~aG-f~~v~~~d~ 279 (340)
T PLN02244 221 IVTWCHRDLEPGETS----LKPDEQKLLDKICA----------AYYLP-AWCSTSDYVKLAESLG-LQDIKTEDW 279 (340)
T ss_pred EEEeccccccccccc----CCHHHHHHHHHHHh----------hccCC-CCCCHHHHHHHHHHCC-CCeeEeeeC
Confidence 988655432211100 00001111122111 12233 2358999999999999 998776654
No 11
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=99.23 E-value=7.9e-10 Score=104.83 Aligned_cols=189 Identities=15% Similarity=0.131 Sum_probs=116.0
Q ss_pred cceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCCCcccccccCcccccCCCC
Q 018250 57 YTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPPRKYYAAGVPGSFHGRLFP 136 (359)
Q Consensus 57 ~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~~~~~vpgsfy~~l~p 136 (359)
...+|+|+|||+|..+..++ +.+ ..+|+..|+..+.....-+..+.. --+..+.+++.+..+|
T Consensus 52 ~~~~VLDiGcG~G~~a~~la--------~~~--------~~~v~giD~s~~~~~~a~~~~~~~-~~i~~~~~D~~~~~~~ 114 (263)
T PTZ00098 52 ENSKVLDIGSGLGGGCKYIN--------EKY--------GAHVHGVDICEKMVNIAKLRNSDK-NKIEFEANDILKKDFP 114 (263)
T ss_pred CCCEEEEEcCCCChhhHHHH--------hhc--------CCEEEEEECCHHHHHHHHHHcCcC-CceEEEECCcccCCCC
Confidence 45789999999999887664 221 358999999876655443333221 0122223577677789
Q ss_pred CCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceeEEEecc
Q 018250 137 KSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLMVFSLIT 216 (359)
Q Consensus 137 ~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lvl~~~g 216 (359)
++++|+|+|+.++++++. .|...+|+.-++-|+|||+++++-..
T Consensus 115 ~~~FD~V~s~~~l~h~~~------------------------------------~d~~~~l~~i~r~LkPGG~lvi~d~~ 158 (263)
T PTZ00098 115 ENTFDMIYSRDAILHLSY------------------------------------ADKKKLFEKCYKWLKPNGILLITDYC 158 (263)
T ss_pred CCCeEEEEEhhhHHhCCH------------------------------------HHHHHHHHHHHHHcCCCcEEEEEEec
Confidence 999999999888766431 14556788889999999999998765
Q ss_pred CCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCChhhhccCCccccCCCHHHHHHHHHhCCceeEeEEEEeecCCCCCCCC
Q 018250 217 GPSGIPFADTVQGATYNFLGSCLWDLAKMGVISEEKARTFNVPAYFPYVEELESLIQRNGHFAMERMQQLDQPMRHKTFP 296 (359)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~l~~al~~lv~eGli~~e~~d~f~~P~y~ps~~E~~~~i~~~G~F~i~~le~~~~~~~~~~~~ 296 (359)
..+... .-+.+...+. .. .+.+++.+++.++++++| |++...+.. .
T Consensus 159 ~~~~~~--------~~~~~~~~~~----~~------------~~~~~~~~~~~~~l~~aG-F~~v~~~d~--~------- 204 (263)
T PTZ00098 159 ADKIEN--------WDEEFKAYIK----KR------------KYTLIPIQEYGDLIKSCN-FQNVVAKDI--S------- 204 (263)
T ss_pred cccccC--------cHHHHHHHHH----hc------------CCCCCCHHHHHHHHHHCC-CCeeeEEeC--c-------
Confidence 543211 0111111111 10 124579999999999999 998777653 1
Q ss_pred hhHHHHHHHHHhh------hhhhhccCHHHHHHHHHHHHHHHH
Q 018250 297 AQFYLSHLRAVLE------GLIGKHFGEELLENIFNHINTKEA 333 (359)
Q Consensus 297 ~~~v~~~iRa~~~------~~l~~~~~e~i~delf~r~~~~~~ 333 (359)
..+..++....+ .-+...++++..+.+-.-+...+.
T Consensus 205 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (263)
T PTZ00098 205 -DYWLELLQVELKKLEEKKEEFLKLYSEKEYNSLKDGWTRKIK 246 (263)
T ss_pred -HHHHHHHHHHHHHHHHhHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 122222222222 222234677666666666655443
No 12
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=99.22 E-value=1.1e-10 Score=108.78 Aligned_cols=162 Identities=16% Similarity=0.165 Sum_probs=102.3
Q ss_pred cceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCC--CcccccccCcccccCC
Q 018250 57 YTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPP--RKYYAAGVPGSFHGRL 134 (359)
Q Consensus 57 ~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~--~~~~~~~vpgsfy~~l 134 (359)
...+|+|+|||+|..+..++ +++ ..|..+++..|+..++....-+.+.. ...-+.-+.+++..-.
T Consensus 53 ~~~~iLDlGcG~G~~~~~l~--------~~~-----~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~ 119 (239)
T TIGR00740 53 PDSNVYDLGCSRGAATLSAR--------RNI-----NQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVE 119 (239)
T ss_pred CCCEEEEecCCCCHHHHHHH--------Hhc-----CCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCC
Confidence 34689999999999888774 222 13567999999987665544443322 0111122335775544
Q ss_pred CCCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceeEEEe
Q 018250 135 FPKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLMVFSL 214 (359)
Q Consensus 135 ~p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lvl~~ 214 (359)
+| +.|+++|++++||++. .|...+|+.-.+.|+|||++++.-
T Consensus 120 ~~--~~d~v~~~~~l~~~~~------------------------------------~~~~~~l~~i~~~LkpgG~l~i~d 161 (239)
T TIGR00740 120 IK--NASMVILNFTLQFLPP------------------------------------EDRIALLTKIYEGLNPNGVLVLSE 161 (239)
T ss_pred CC--CCCEEeeecchhhCCH------------------------------------HHHHHHHHHHHHhcCCCeEEEEee
Confidence 55 5789999999999642 134467888899999999999986
Q ss_pred ccCCCCCCCCCcchhHHHHHHHHHHHHHHH-cCCCChhhh----ccCCccccCCCHHHHHHHHHhCCcee
Q 018250 215 ITGPSGIPFADTVQGATYNFLGSCLWDLAK-MGVISEEKA----RTFNVPAYFPYVEELESLIQRNGHFA 279 (359)
Q Consensus 215 ~g~~~~~~~~~~~~~~~~~~l~~al~~lv~-eGli~~e~~----d~f~~P~y~ps~~E~~~~i~~~G~F~ 279 (359)
..+.+... ....+.+.+..... .|. +++++ +.+.......|.+|+.+.++++| |.
T Consensus 162 ~~~~~~~~--------~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~aG-F~ 221 (239)
T TIGR00740 162 KFRFEDTK--------INHLLIDLHHQFKRANGY-SELEISQKRTALENVMRTDSIETHKARLKNVG-FS 221 (239)
T ss_pred cccCCCHh--------HHHHHHHHHHHHHHHcCC-CHHHHHHHHHHHhccCCCCCHHHHHHHHHHcC-Cc
Confidence 54433211 12333334333333 343 44333 22333445679999999999999 75
No 13
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.20 E-value=1.1e-09 Score=112.08 Aligned_cols=187 Identities=18% Similarity=0.242 Sum_probs=116.2
Q ss_pred cceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCCCcccccccCcccccCCCC
Q 018250 57 YTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPPRKYYAAGVPGSFHGRLFP 136 (359)
Q Consensus 57 ~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~~~~~vpgsfy~~l~p 136 (359)
...+|+|+|||+|..++.+. +.+ ..+++..|+........-+.......-+.-+-+++....+|
T Consensus 266 ~~~~vLDiGcG~G~~~~~la--------~~~--------~~~v~gvDiS~~~l~~A~~~~~~~~~~v~~~~~d~~~~~~~ 329 (475)
T PLN02336 266 PGQKVLDVGCGIGGGDFYMA--------ENF--------DVHVVGIDLSVNMISFALERAIGRKCSVEFEVADCTKKTYP 329 (475)
T ss_pred CCCEEEEEeccCCHHHHHHH--------Hhc--------CCEEEEEECCHHHHHHHHHHhhcCCCceEEEEcCcccCCCC
Confidence 35689999999999877663 221 35899999976544332222111110011122477777789
Q ss_pred CCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceeEEEecc
Q 018250 137 KSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLMVFSLIT 216 (359)
Q Consensus 137 ~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lvl~~~g 216 (359)
++++|+|+|..+++|+.+ ...+|+.-++-|+|||+++++.+.
T Consensus 330 ~~~fD~I~s~~~l~h~~d--------------------------------------~~~~l~~~~r~LkpgG~l~i~~~~ 371 (475)
T PLN02336 330 DNSFDVIYSRDTILHIQD--------------------------------------KPALFRSFFKWLKPGGKVLISDYC 371 (475)
T ss_pred CCCEEEEEECCcccccCC--------------------------------------HHHHHHHHHHHcCCCeEEEEEEec
Confidence 999999999999999643 224677788999999999999887
Q ss_pred CCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCChhhhccCCccccCCCHHHHHHHHHhCCceeEeEEEEeecCCCCCCCC
Q 018250 217 GPSGIPFADTVQGATYNFLGSCLWDLAKMGVISEEKARTFNVPAYFPYVEELESLIQRNGHFAMERMQQLDQPMRHKTFP 296 (359)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~l~~al~~lv~eGli~~e~~d~f~~P~y~ps~~E~~~~i~~~G~F~i~~le~~~~~~~~~~~~ 296 (359)
+....+. ..+...+. ..| +..++.+++.++++++| |++..++...
T Consensus 372 ~~~~~~~---------~~~~~~~~---~~g-------------~~~~~~~~~~~~l~~aG-F~~i~~~d~~--------- 416 (475)
T PLN02336 372 RSPGTPS---------PEFAEYIK---QRG-------------YDLHDVQAYGQMLKDAG-FDDVIAEDRT--------- 416 (475)
T ss_pred cCCCCCc---------HHHHHHHH---hcC-------------CCCCCHHHHHHHHHHCC-Ceeeeeecch---------
Confidence 6543211 11111111 112 25679999999999999 9988666541
Q ss_pred hhHHHHHHHHHhhhhh------hhccCHHHHHHHHHHHHHHHH
Q 018250 297 AQFYLSHLRAVLEGLI------GKHFGEELLENIFNHINTKEA 333 (359)
Q Consensus 297 ~~~v~~~iRa~~~~~l------~~~~~e~i~delf~r~~~~~~ 333 (359)
..+..++..+...+. ...++++..+.+...+.+.+.
T Consensus 417 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 458 (475)
T PLN02336 417 -DQFLQVLQRELDAVEKEKDEFISDFSEEDYNDIVGGWKAKLV 458 (475)
T ss_pred -HHHHHHHHHHHHHHHhCHHHHHHhcCHHHHHHHHHhHHHHHh
Confidence 233333333333221 224677777766666666554
No 14
>PRK08317 hypothetical protein; Provisional
Probab=99.19 E-value=5.9e-09 Score=95.49 Aligned_cols=219 Identities=16% Similarity=0.114 Sum_probs=127.1
Q ss_pred cceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCC---CcccccccCcccccC
Q 018250 57 YTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPP---RKYYAAGVPGSFHGR 133 (359)
Q Consensus 57 ~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~---~~~~~~~vpgsfy~~ 133 (359)
...+|+|+|||+|..+..++ +.+ .|..+++..|+........-+.... .-.|.. +++...
T Consensus 19 ~~~~vLdiG~G~G~~~~~~a--------~~~------~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~---~d~~~~ 81 (241)
T PRK08317 19 PGDRVLDVGCGPGNDARELA--------RRV------GPEGRVVGIDRSEAMLALAKERAAGLGPNVEFVR---GDADGL 81 (241)
T ss_pred CCCEEEEeCCCCCHHHHHHH--------Hhc------CCCcEEEEEeCCHHHHHHHHHHhhCCCCceEEEe---cccccC
Confidence 35789999999999888774 222 1345889999876554443333111 111222 355555
Q ss_pred CCCCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceeEEE
Q 018250 134 LFPKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLMVFS 213 (359)
Q Consensus 134 l~p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lvl~ 213 (359)
.++++++|++++..++||+.+ +..+|+...+-|+|||.+++.
T Consensus 82 ~~~~~~~D~v~~~~~~~~~~~--------------------------------------~~~~l~~~~~~L~~gG~l~~~ 123 (241)
T PRK08317 82 PFPDGSFDAVRSDRVLQHLED--------------------------------------PARALAEIARVLRPGGRVVVL 123 (241)
T ss_pred CCCCCCceEEEEechhhccCC--------------------------------------HHHHHHHHHHHhcCCcEEEEE
Confidence 578899999999999999653 234677788899999999988
Q ss_pred eccCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCChhhhccCCccccCCCHHHHHHHHHhCCceeEeEEEEeecCCCCC
Q 018250 214 LITGPSGIPFADTVQGATYNFLGSCLWDLAKMGVISEEKARTFNVPAYFPYVEELESLIQRNGHFAMERMQQLDQPMRHK 293 (359)
Q Consensus 214 ~~g~~~~~~~~~~~~~~~~~~l~~al~~lv~eGli~~e~~d~f~~P~y~ps~~E~~~~i~~~G~F~i~~le~~~~~~~~~ 293 (359)
...-+...... .....+..+...|.. . +. -..+..++...++++| |++..++.+......
T Consensus 124 ~~~~~~~~~~~--~~~~~~~~~~~~~~~---~----------~~---~~~~~~~~~~~l~~aG-f~~~~~~~~~~~~~~- 183 (241)
T PRK08317 124 DTDWDTLVWHS--GDRALMRKILNFWSD---H----------FA---DPWLGRRLPGLFREAG-LTDIEVEPYTLIETD- 183 (241)
T ss_pred ecCCCceeecC--CChHHHHHHHHHHHh---c----------CC---CCcHHHHHHHHHHHcC-CCceeEEEEEEeccC-
Confidence 75322210000 011122222222221 1 11 1234568999999999 998888776432211
Q ss_pred CCChhHHHHHHHHHhhhhh-hhccCHHHHHHHHHHHHHHHHHHhhhhhcCCcceEEEEEEEEecc
Q 018250 294 TFPAQFYLSHLRAVLEGLI-GKHFGEELLENIFNHINTKEAEILSIHNGKLHKEIEVFVVLKRIS 357 (359)
Q Consensus 294 ~~~~~~v~~~iRa~~~~~l-~~~~~e~i~delf~r~~~~~~~~~~~~~~~~~~~~~~~~~l~r~~ 357 (359)
..+......+......+. ...+.++-++++++.+++.... ...+-+..++++..||+
T Consensus 184 -~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~------~~~~~~~~~~~~~~~kp 241 (241)
T PRK08317 184 -LKEADKGFGLIRAARRAVEAGGISADEADAWLADLAQLARA------GEFFFSVTGFLVVGRKP 241 (241)
T ss_pred -cchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhc------CCEEEEEEEEEEEEeCC
Confidence 122222233332222222 2235667778888877765431 12245677788877764
No 15
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.16 E-value=1.2e-10 Score=107.43 Aligned_cols=173 Identities=15% Similarity=0.127 Sum_probs=101.6
Q ss_pred ceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCCCcc-cccccCcccccCCCC
Q 018250 58 TVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPPRKY-YAAGVPGSFHGRLFP 136 (359)
Q Consensus 58 ~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~-~~~~vpgsfy~~l~p 136 (359)
..+|+|+|||+|..+..+. +.+ .|..+++..|+..+.....-..+..... -+.-+.+++....+|
T Consensus 46 ~~~vLDiGcG~G~~~~~la--------~~~------~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~ 111 (231)
T TIGR02752 46 GTSALDVCCGTADWSIALA--------EAV------GPEGHVIGLDFSENMLSVGRQKVKDAGLHNVELVHGNAMELPFD 111 (231)
T ss_pred CCEEEEeCCCcCHHHHHHH--------HHh------CCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEechhcCCCC
Confidence 4799999999999888774 332 2446899999977654433322221000 112233466555678
Q ss_pred CCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceeEEEecc
Q 018250 137 KSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLMVFSLIT 216 (359)
Q Consensus 137 ~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lvl~~~g 216 (359)
++++|+|+++.++||++. +..+|+.-.+-|+|||++++.-.+
T Consensus 112 ~~~fD~V~~~~~l~~~~~--------------------------------------~~~~l~~~~~~Lk~gG~l~~~~~~ 153 (231)
T TIGR02752 112 DNSFDYVTIGFGLRNVPD--------------------------------------YMQVLREMYRVVKPGGKVVCLETS 153 (231)
T ss_pred CCCccEEEEecccccCCC--------------------------------------HHHHHHHHHHHcCcCeEEEEEECC
Confidence 999999999999999643 223666778899999999987766
Q ss_pred CCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCChhhhccCCccccCCCHHHHHHHHHhCCceeEeEEEEe
Q 018250 217 GPSGIPFADTVQGATYNFLGSCLWDLAKMGVISEEKARTFNVPAYFPYVEELESLIQRNGHFAMERMQQL 286 (359)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~l~~al~~lv~eGli~~e~~d~f~~P~y~ps~~E~~~~i~~~G~F~i~~le~~ 286 (359)
.++....... ....+..+--.+..+...+....... ......+|+.+|+++.++++| |++.+++.+
T Consensus 154 ~~~~~~~~~~-~~~~~~~~~p~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~l~~aG-f~~~~~~~~ 219 (231)
T TIGR02752 154 QPTIPGFKQL-YFFYFKYIMPLFGKLFAKSYKEYSWL--QESTRDFPGMDELAEMFQEAG-FKDVEVKSY 219 (231)
T ss_pred CCCChHHHHH-HHHHHcChhHHhhHHhcCCHHHHHHH--HHHHHHcCCHHHHHHHHHHcC-CCeeEEEEc
Confidence 5442110000 00000000011111111111000000 011236899999999999999 998888776
No 16
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=99.15 E-value=2.6e-10 Score=111.24 Aligned_cols=149 Identities=17% Similarity=0.187 Sum_probs=96.9
Q ss_pred ceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHh----CCC-CcccccccCccccc
Q 018250 58 TVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRT----LPP-RKYYAAGVPGSFHG 132 (359)
Q Consensus 58 ~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~----l~~-~~~~~~~vpgsfy~ 132 (359)
..+|+|+|||+|..++.++ +.. + -+|+.-|.....+. -++. ... ..+ .-+++++.+
T Consensus 123 g~~VLDIGCG~G~~~~~la--------~~g-------~-~~V~GiD~S~~~l~-q~~a~~~~~~~~~~i--~~~~~d~e~ 183 (322)
T PRK15068 123 GRTVLDVGCGNGYHMWRML--------GAG-------A-KLVVGIDPSQLFLC-QFEAVRKLLGNDQRA--HLLPLGIEQ 183 (322)
T ss_pred CCEEEEeccCCcHHHHHHH--------HcC-------C-CEEEEEcCCHHHHH-HHHHHHHhcCCCCCe--EEEeCCHHH
Confidence 4689999999999998774 221 2 25899996654432 2221 111 111 123345544
Q ss_pred CCCCCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceeEE
Q 018250 133 RLFPKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLMVF 212 (359)
Q Consensus 133 ~l~p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lvl 212 (359)
..+ ++++|+|+|..++||.. |...+|+.-++.|+|||.+++
T Consensus 184 lp~-~~~FD~V~s~~vl~H~~--------------------------------------dp~~~L~~l~~~LkpGG~lvl 224 (322)
T PRK15068 184 LPA-LKAFDTVFSMGVLYHRR--------------------------------------SPLDHLKQLKDQLVPGGELVL 224 (322)
T ss_pred CCC-cCCcCEEEECChhhccC--------------------------------------CHHHHHHHHHHhcCCCcEEEE
Confidence 445 78999999999999854 233467788899999999999
Q ss_pred EeccCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCChhhhccCCccccCCCHHHHHHHHHhCCceeEeEEEEee
Q 018250 213 SLITGPSGIPFADTVQGATYNFLGSCLWDLAKMGVISEEKARTFNVPAYFPYVEELESLIQRNGHFAMERMQQLD 287 (359)
Q Consensus 213 ~~~g~~~~~~~~~~~~~~~~~~l~~al~~lv~eGli~~e~~d~f~~P~y~ps~~E~~~~i~~~G~F~i~~le~~~ 287 (359)
..+..+..... .+...+.+..+...++.||.+++..+++++| |++.++....
T Consensus 225 ~~~~i~~~~~~----------------------~l~p~~~y~~~~~~~~lps~~~l~~~L~~aG-F~~i~~~~~~ 276 (322)
T PRK15068 225 ETLVIDGDENT----------------------VLVPGDRYAKMRNVYFIPSVPALKNWLERAG-FKDVRIVDVS 276 (322)
T ss_pred EEEEecCCCcc----------------------ccCchhHHhcCccceeCCCHHHHHHHHHHcC-CceEEEEeCC
Confidence 87644331110 0111122233444567899999999999999 9988887653
No 17
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=99.12 E-value=2.9e-10 Score=97.98 Aligned_cols=138 Identities=20% Similarity=0.255 Sum_probs=91.3
Q ss_pred CcceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCCCcccccccCcccc--cC
Q 018250 56 SYTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPPRKYYAAGVPGSFH--GR 133 (359)
Q Consensus 56 ~~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~~~~~vpgsfy--~~ 133 (359)
....+|+|+|||+|.++..+. +. ..+++..|....+... ....+..|. ..
T Consensus 21 ~~~~~vLDiGcG~G~~~~~l~--------~~---------~~~~~g~D~~~~~~~~-----------~~~~~~~~~~~~~ 72 (161)
T PF13489_consen 21 KPGKRVLDIGCGTGSFLRALA--------KR---------GFEVTGVDISPQMIEK-----------RNVVFDNFDAQDP 72 (161)
T ss_dssp TTTSEEEEESSTTSHHHHHHH--------HT---------TSEEEEEESSHHHHHH-----------TTSEEEEEECHTH
T ss_pred CCCCEEEEEcCCCCHHHHHHH--------Hh---------CCEEEEEECCHHHHhh-----------hhhhhhhhhhhhh
Confidence 456899999999998877662 22 1389999987543222 011111222 33
Q ss_pred CCCCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceeEEE
Q 018250 134 LFPKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLMVFS 213 (359)
Q Consensus 134 l~p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lvl~ 213 (359)
.+|++++|+|+|+.+|||+. |+..+|+.-.+-|+|||+++++
T Consensus 73 ~~~~~~fD~i~~~~~l~~~~--------------------------------------d~~~~l~~l~~~LkpgG~l~~~ 114 (161)
T PF13489_consen 73 PFPDGSFDLIICNDVLEHLP--------------------------------------DPEEFLKELSRLLKPGGYLVIS 114 (161)
T ss_dssp HCHSSSEEEEEEESSGGGSS--------------------------------------HHHHHHHHHHHCEEEEEEEEEE
T ss_pred hccccchhhHhhHHHHhhcc--------------------------------------cHHHHHHHHHHhcCCCCEEEEE
Confidence 36899999999999999965 3445788889999999999999
Q ss_pred eccCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCChhhhccCCccccCCCHHHHHHHHHhCCceeEeE
Q 018250 214 LITGPSGIPFADTVQGATYNFLGSCLWDLAKMGVISEEKARTFNVPAYFPYVEELESLIQRNGHFAMER 282 (359)
Q Consensus 214 ~~g~~~~~~~~~~~~~~~~~~l~~al~~lv~eGli~~e~~d~f~~P~y~ps~~E~~~~i~~~G~F~i~~ 282 (359)
.+.+... .. ..+... ...... .--..+.+.++++.++++.| |+|.+
T Consensus 115 ~~~~~~~-----------~~---~~~~~~---~~~~~~-----~~~~~~~~~~~~~~ll~~~G-~~iv~ 160 (161)
T PF13489_consen 115 DPNRDDP-----------SP---RSFLKW---RYDRPY-----GGHVHFFSPDELRQLLEQAG-FEIVE 160 (161)
T ss_dssp EEBTTSH-----------HH---HHHHHC---CGTCHH-----TTTTEEBBHHHHHHHHHHTT-EEEEE
T ss_pred EcCCcch-----------hh---hHHHhc---CCcCcc-----CceeccCCHHHHHHHHHHCC-CEEEE
Confidence 9877531 00 011110 111110 01126669999999999999 99854
No 18
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.08 E-value=1.2e-10 Score=108.69 Aligned_cols=167 Identities=21% Similarity=0.249 Sum_probs=72.8
Q ss_pred cceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCC---Cc-ccccccCccccc
Q 018250 57 YTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPP---RK-YYAAGVPGSFHG 132 (359)
Q Consensus 57 ~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~---~~-~~~~~vpgsfy~ 132 (359)
...+|+|+|||||..|+.++ ++. .|..+|+..|+..++....-+.+.. .. -|+. |+..+
T Consensus 47 ~g~~vLDv~~GtG~~~~~l~--------~~~------~~~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~---~da~~ 109 (233)
T PF01209_consen 47 PGDRVLDVACGTGDVTRELA--------RRV------GPNGKVVGVDISPGMLEVARKKLKREGLQNIEFVQ---GDAED 109 (233)
T ss_dssp S--EEEEET-TTSHHHHHHG--------GGS------S---EEEEEES-HHHHHHHHHHHHHTT--SEEEEE----BTTB
T ss_pred CCCEEEEeCCChHHHHHHHH--------HHC------CCccEEEEecCCHHHHHHHHHHHHhhCCCCeeEEE---cCHHH
Confidence 45799999999999998873 322 2456999999999887766554432 12 2444 57777
Q ss_pred CCCCCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceeEE
Q 018250 133 RLFPKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLMVF 212 (359)
Q Consensus 133 ~l~p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lvl 212 (359)
..||++|+|.+++++.+|-+.+ ....|+.-.+.|||||++++
T Consensus 110 lp~~d~sfD~v~~~fglrn~~d--------------------------------------~~~~l~E~~RVLkPGG~l~i 151 (233)
T PF01209_consen 110 LPFPDNSFDAVTCSFGLRNFPD--------------------------------------RERALREMYRVLKPGGRLVI 151 (233)
T ss_dssp --S-TT-EEEEEEES-GGG-SS--------------------------------------HHHHHHHHHHHEEEEEEEEE
T ss_pred hcCCCCceeEEEHHhhHHhhCC--------------------------------------HHHHHHHHHHHcCCCeEEEE
Confidence 7899999999999999998653 22356667899999999999
Q ss_pred EeccCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCChh--hhcc-CCccccCCCHHHHHHHHHhCCceeEeEEEE
Q 018250 213 SLITGPSGIPFADTVQGATYNFLGSCLWDLAKMGVISEE--KART-FNVPAYFPYVEELESLIQRNGHFAMERMQQ 285 (359)
Q Consensus 213 ~~~g~~~~~~~~~~~~~~~~~~l~~al~~lv~eGli~~e--~~d~-f~~P~y~ps~~E~~~~i~~~G~F~i~~le~ 285 (359)
.-++++.... ...++...-..+.=++ -.+++.+ .++- ...-..||+.+|+.+.++++| |+..+.+.
T Consensus 152 le~~~p~~~~-----~~~~~~~y~~~ilP~~-g~l~~~~~~~Y~yL~~Si~~f~~~~~~~~~l~~~G-f~~v~~~~ 220 (233)
T PF01209_consen 152 LEFSKPRNPL-----LRALYKFYFKYILPLI-GRLLSGDREAYRYLPESIRRFPSPEELKELLEEAG-FKNVEYRP 220 (233)
T ss_dssp EEEEB-SSHH-----HHHHHHH------------------------------------------------------
T ss_pred eeccCCCCch-----hhceeeeeeccccccc-ccccccccccccccccccccccccccccccccccc-cccccccc
Confidence 8888876311 1111111111000011 1223322 1111 122236789999999999999 98654443
No 19
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=99.07 E-value=1.3e-09 Score=102.26 Aligned_cols=163 Identities=17% Similarity=0.191 Sum_probs=99.5
Q ss_pred cceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCC--CcccccccCcccccCC
Q 018250 57 YTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPP--RKYYAAGVPGSFHGRL 134 (359)
Q Consensus 57 ~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~--~~~~~~~vpgsfy~~l 134 (359)
...+|+|+|||+|.+++.+. +.. ..|..+++..|+...+-...-+.+.. ...-+.-+.+++.+-.
T Consensus 56 ~~~~vLDlGcGtG~~~~~l~--------~~~-----~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~ 122 (247)
T PRK15451 56 PGTQVYDLGCSLGAATLSVR--------RNI-----HHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIA 122 (247)
T ss_pred CCCEEEEEcccCCHHHHHHH--------Hhc-----CCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCC
Confidence 35789999999999988763 221 13567999999987665554443321 0001112234555443
Q ss_pred CCCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceeEEEe
Q 018250 135 FPKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLMVFSL 214 (359)
Q Consensus 135 ~p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lvl~~ 214 (359)
++ ..|+++|+.++||++. . +...+|+.-++-|+|||.|+++-
T Consensus 123 ~~--~~D~vv~~~~l~~l~~--~----------------------------------~~~~~l~~i~~~LkpGG~l~l~e 164 (247)
T PRK15451 123 IE--NASMVVLNFTLQFLEP--S----------------------------------ERQALLDKIYQGLNPGGALVLSE 164 (247)
T ss_pred CC--CCCEEehhhHHHhCCH--H----------------------------------HHHHHHHHHHHhcCCCCEEEEEE
Confidence 44 5899999999999752 1 23346777889999999999985
Q ss_pred ccCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCChhhhcc----CCccccCCCHHHHHHHHHhCCcee
Q 018250 215 ITGPSGIPFADTVQGATYNFLGSCLWDLAKMGVISEEKART----FNVPAYFPYVEELESLIQRNGHFA 279 (359)
Q Consensus 215 ~g~~~~~~~~~~~~~~~~~~l~~al~~lv~eGli~~e~~d~----f~~P~y~ps~~E~~~~i~~~G~F~ 279 (359)
.-...... ..+.+...|..+....-.+++++.. ...-...-|.++..++++++| |+
T Consensus 165 ~~~~~~~~--------~~~~~~~~~~~~~~~~g~s~~ei~~~~~~~~~~~~~~~~~~~~~~L~~aG-F~ 224 (247)
T PRK15451 165 KFSFEDAK--------VGELLFNMHHDFKRANGYSELEISQKRSMLENVMLTDSVETHKARLHKAG-FE 224 (247)
T ss_pred ecCCCcch--------hHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhhcccCCHHHHHHHHHHcC-ch
Confidence 33322111 1233444555555444445544432 222222248999999999999 53
No 20
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=99.04 E-value=3.7e-10 Score=88.36 Aligned_cols=94 Identities=26% Similarity=0.322 Sum_probs=69.1
Q ss_pred EeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCCCc-ccccccCcccccCCCCCCce
Q 018250 62 ADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPPRK-YYAAGVPGSFHGRLFPKSTL 140 (359)
Q Consensus 62 aDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~-~~~~~vpgsfy~~l~p~~s~ 140 (359)
||+|||+|.++..+. ++ +...++..|.....-...-+...... -+.. +++....||++|+
T Consensus 1 LdiG~G~G~~~~~l~--------~~--------~~~~v~~~D~~~~~~~~~~~~~~~~~~~~~~---~d~~~l~~~~~sf 61 (95)
T PF08241_consen 1 LDIGCGTGRFAAALA--------KR--------GGASVTGIDISEEMLEQARKRLKNEGVSFRQ---GDAEDLPFPDNSF 61 (95)
T ss_dssp EEET-TTSHHHHHHH--------HT--------TTCEEEEEES-HHHHHHHHHHTTTSTEEEEE---SBTTSSSS-TT-E
T ss_pred CEecCcCCHHHHHHH--------hc--------cCCEEEEEeCCHHHHHHHHhcccccCchhee---ehHHhCccccccc
Confidence 799999999999885 22 24689999998866655555554322 1333 4777788999999
Q ss_pred eEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceeEE
Q 018250 141 HVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLMVF 212 (359)
Q Consensus 141 d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lvl 212 (359)
|+++|+.++||+. |...+|+.-++-|||||++++
T Consensus 62 D~v~~~~~~~~~~--------------------------------------~~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 62 DVVFSNSVLHHLE--------------------------------------DPEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp EEEEEESHGGGSS--------------------------------------HHHHHHHHHHHHEEEEEEEEE
T ss_pred cccccccceeecc--------------------------------------CHHHHHHHHHHHcCcCeEEeC
Confidence 9999999999971 455688889999999999986
No 21
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=99.03 E-value=2.1e-09 Score=104.73 Aligned_cols=153 Identities=14% Similarity=0.101 Sum_probs=99.0
Q ss_pred ceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCC----Cc-ccccccCccccc
Q 018250 58 TVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPP----RK-YYAAGVPGSFHG 132 (359)
Q Consensus 58 ~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~----~~-~~~~~vpgsfy~ 132 (359)
..+|+|+|||+|..+..+. + +..+|+.-|+.........+.... .. .|.. +++.+
T Consensus 132 g~~ILDIGCG~G~~s~~La--------~---------~g~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~---~dae~ 191 (322)
T PLN02396 132 GLKFIDIGCGGGLLSEPLA--------R---------MGATVTGVDAVDKNVKIARLHADMDPVTSTIEYLC---TTAEK 191 (322)
T ss_pred CCEEEEeeCCCCHHHHHHH--------H---------cCCEEEEEeCCHHHHHHHHHHHHhcCcccceeEEe---cCHHH
Confidence 4699999999999887663 1 135899999987665544332211 11 1232 46655
Q ss_pred CCCCCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceeEE
Q 018250 133 RLFPKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLMVF 212 (359)
Q Consensus 133 ~l~p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lvl 212 (359)
..++++++|+|+|..+|||+.+. ..||+.-++-|||||++++
T Consensus 192 l~~~~~~FD~Vi~~~vLeHv~d~--------------------------------------~~~L~~l~r~LkPGG~lii 233 (322)
T PLN02396 192 LADEGRKFDAVLSLEVIEHVANP--------------------------------------AEFCKSLSALTIPNGATVL 233 (322)
T ss_pred hhhccCCCCEEEEhhHHHhcCCH--------------------------------------HHHHHHHHHHcCCCcEEEE
Confidence 55778999999999999996642 2478888899999999999
Q ss_pred EeccCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCChhhhccCCccc-cCCCHHHHHHHHHhCCceeEeEEEEe
Q 018250 213 SLITGPSGIPFADTVQGATYNFLGSCLWDLAKMGVISEEKARTFNVPA-YFPYVEELESLIQRNGHFAMERMQQL 286 (359)
Q Consensus 213 ~~~g~~~~~~~~~~~~~~~~~~l~~al~~lv~eGli~~e~~d~f~~P~-y~ps~~E~~~~i~~~G~F~i~~le~~ 286 (359)
+++.+... .++..+.. .+.+. +.+.. -.+.| .+.+.+|+..++++.| |++..+.-+
T Consensus 234 st~nr~~~---------~~~~~i~~--~eyi~-~~lp~-----gth~~~~f~tp~eL~~lL~~aG-f~i~~~~G~ 290 (322)
T PLN02396 234 STINRTMR---------AYASTIVG--AEYIL-RWLPK-----GTHQWSSFVTPEELSMILQRAS-VDVKEMAGF 290 (322)
T ss_pred EECCcCHH---------HHHHhhhh--HHHHH-hcCCC-----CCcCccCCCCHHHHHHHHHHcC-CeEEEEeee
Confidence 98755421 01111100 01111 11110 11222 4789999999999999 999877654
No 22
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=99.03 E-value=2.5e-09 Score=103.90 Aligned_cols=163 Identities=15% Similarity=0.155 Sum_probs=100.5
Q ss_pred ceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHh----CCC-CcccccccCccccc
Q 018250 58 TVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRT----LPP-RKYYAAGVPGSFHG 132 (359)
Q Consensus 58 ~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~----l~~-~~~~~~~vpgsfy~ 132 (359)
..+|+|+|||+|..+..++ .. .+ -.|+.-|....+..+ |+. ... ..+. -.++++.
T Consensus 122 g~~VLDvGCG~G~~~~~~~--------~~-------g~-~~v~GiDpS~~ml~q-~~~~~~~~~~~~~v~--~~~~~ie- 181 (314)
T TIGR00452 122 GRTILDVGCGSGYHMWRML--------GH-------GA-KSLVGIDPTVLFLCQ-FEAVRKLLDNDKRAI--LEPLGIE- 181 (314)
T ss_pred CCEEEEeccCCcHHHHHHH--------Hc-------CC-CEEEEEcCCHHHHHH-HHHHHHHhccCCCeE--EEECCHH-
Confidence 4699999999999887663 21 11 267888876655433 221 111 1111 1223442
Q ss_pred CCCCCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceeEE
Q 018250 133 RLFPKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLMVF 212 (359)
Q Consensus 133 ~l~p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lvl 212 (359)
.+-+.+++|+|+|+.+|||+.. ...+|+.-++-|+|||.|++
T Consensus 182 ~lp~~~~FD~V~s~gvL~H~~d--------------------------------------p~~~L~el~r~LkpGG~Lvl 223 (314)
T TIGR00452 182 QLHELYAFDTVFSMGVLYHRKS--------------------------------------PLEHLKQLKHQLVIKGELVL 223 (314)
T ss_pred HCCCCCCcCEEEEcchhhccCC--------------------------------------HHHHHHHHHHhcCCCCEEEE
Confidence 3333468999999999999542 12367788999999999999
Q ss_pred EeccCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCChhhhccCCccccCCCHHHHHHHHHhCCceeEeEEEEeecCCCC
Q 018250 213 SLITGPSGIPFADTVQGATYNFLGSCLWDLAKMGVISEEKARTFNVPAYFPYVEELESLIQRNGHFAMERMQQLDQPMRH 292 (359)
Q Consensus 213 ~~~g~~~~~~~~~~~~~~~~~~l~~al~~lv~eGli~~e~~d~f~~P~y~ps~~E~~~~i~~~G~F~i~~le~~~~~~~~ 292 (359)
.+...+..... + +...+.+..+...++.||.+++..+++++| |+..++......+..
T Consensus 224 etl~i~g~~~~--------------~--------l~p~~ry~k~~nv~flpS~~~L~~~L~~aG-F~~V~i~~~~~tt~~ 280 (314)
T TIGR00452 224 ETLVIDGDLNT--------------V--------LVPKDRYAKMKNVYFIPSVSALKNWLEKVG-FENFRILDVLKTTPE 280 (314)
T ss_pred EEEEecCcccc--------------c--------cCchHHHHhccccccCCCHHHHHHHHHHCC-CeEEEEEeccCCCHH
Confidence 87643321000 0 011111223445567899999999999999 998877765432222
Q ss_pred CCCChhHHHHHHH
Q 018250 293 KTFPAQFYLSHLR 305 (359)
Q Consensus 293 ~~~~~~~v~~~iR 305 (359)
.+..+.|++
T Consensus 281 ----eqr~t~w~~ 289 (314)
T TIGR00452 281 ----EQRKTDWIL 289 (314)
T ss_pred ----Hhhhhhhhh
Confidence 345666765
No 23
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.01 E-value=3.9e-09 Score=99.35 Aligned_cols=160 Identities=13% Similarity=0.183 Sum_probs=99.4
Q ss_pred cceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCC----Cc-ccccccCcccc
Q 018250 57 YTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPP----RK-YYAAGVPGSFH 131 (359)
Q Consensus 57 ~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~----~~-~~~~~vpgsfy 131 (359)
.+.+|+|+|||+|..+..++ +. ..+|+..|+...+-...-+.... .. .++. +++.
T Consensus 44 ~~~~vLDiGcG~G~~a~~la--------~~---------g~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~---~d~~ 103 (255)
T PRK11036 44 RPLRVLDAGGGEGQTAIKLA--------EL---------GHQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIH---CAAQ 103 (255)
T ss_pred CCCEEEEeCCCchHHHHHHH--------Hc---------CCEEEEEECCHHHHHHHHHHHHhcCCccceEEEE---cCHH
Confidence 45799999999999988874 21 24789999987665544333221 11 1333 3443
Q ss_pred cCC-CCCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCcee
Q 018250 132 GRL-FPKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLM 210 (359)
Q Consensus 132 ~~l-~p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~l 210 (359)
+.. ++++++|++++..++||+.+.+ .+|+.-++-|+|||++
T Consensus 104 ~l~~~~~~~fD~V~~~~vl~~~~~~~--------------------------------------~~l~~~~~~LkpgG~l 145 (255)
T PRK11036 104 DIAQHLETPVDLILFHAVLEWVADPK--------------------------------------SVLQTLWSVLRPGGAL 145 (255)
T ss_pred HHhhhcCCCCCEEEehhHHHhhCCHH--------------------------------------HHHHHHHHHcCCCeEE
Confidence 332 5678999999999999975421 2455667899999999
Q ss_pred EEEeccCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCChhhhccCCccccCCCHHHHHHHHHhCCceeEeEEEEee
Q 018250 211 VFSLITGPSGIPFADTVQGATYNFLGSCLWDLAKMGVISEEKARTFNVPAYFPYVEELESLIQRNGHFAMERMQQLD 287 (359)
Q Consensus 211 vl~~~g~~~~~~~~~~~~~~~~~~l~~al~~lv~eGli~~e~~d~f~~P~y~ps~~E~~~~i~~~G~F~i~~le~~~ 287 (359)
++.+...... .+-..+..-+. .+..|+...+.. ...|.+..+.+++.+++++.| |++....-+.
T Consensus 146 ~i~~~n~~~~---------~~~~~~~~~~~-~~~~~~~~~~~~--~~~p~~~~~~~~l~~~l~~aG-f~~~~~~gi~ 209 (255)
T PRK11036 146 SLMFYNANGL---------LMHNMVAGNFD-YVQAGMPKRKKR--TLSPDYPLDPEQVYQWLEEAG-WQIMGKTGVR 209 (255)
T ss_pred EEEEECccHH---------HHHHHHccChH-HHHhcCcccccc--CCCCCCCCCHHHHHHHHHHCC-CeEeeeeeEE
Confidence 9887654321 00011111111 122333211111 123566789999999999999 9997666543
No 24
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=99.00 E-value=9.1e-09 Score=94.50 Aligned_cols=142 Identities=18% Similarity=0.213 Sum_probs=92.3
Q ss_pred EEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCCC--cccccccCcccccCCCCC
Q 018250 60 RIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPPR--KYYAAGVPGSFHGRLFPK 137 (359)
Q Consensus 60 ~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~--~~~~~~vpgsfy~~l~p~ 137 (359)
+|+|+|||+|..+..++ +.+ |..+++..|+..+.....-+.+... .--+.-+.+++...++|
T Consensus 2 ~vLDiGcG~G~~~~~la--------~~~-------~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~~~- 65 (224)
T smart00828 2 RVLDFGCGYGSDLIDLA--------ERH-------PHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDPFP- 65 (224)
T ss_pred eEEEECCCCCHHHHHHH--------HHC-------CCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCCCC-
Confidence 69999999999887664 332 3457888888665544333332210 00011112344334444
Q ss_pred CceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceeEEEeccC
Q 018250 138 STLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLMVFSLITG 217 (359)
Q Consensus 138 ~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lvl~~~g~ 217 (359)
+++|+|+|..++|++. |+..+|+.-++-|+|||++++.-+..
T Consensus 66 ~~fD~I~~~~~l~~~~--------------------------------------~~~~~l~~~~~~LkpgG~l~i~~~~~ 107 (224)
T smart00828 66 DTYDLVFGFEVIHHIK--------------------------------------DKMDLFSNISRHLKDGGHLVLADFIA 107 (224)
T ss_pred CCCCEeehHHHHHhCC--------------------------------------CHHHHHHHHHHHcCCCCEEEEEEccc
Confidence 5899999999999953 33457888899999999999886533
Q ss_pred CCCCCCCCcchhHHHHHHHHHHHHHHHcCCCChhhhccCCccccCCCHHHHHHHHHhCCceeEeEEEEe
Q 018250 218 PSGIPFADTVQGATYNFLGSCLWDLAKMGVISEEKARTFNVPAYFPYVEELESLIQRNGHFAMERMQQL 286 (359)
Q Consensus 218 ~~~~~~~~~~~~~~~~~l~~al~~lv~eGli~~e~~d~f~~P~y~ps~~E~~~~i~~~G~F~i~~le~~ 286 (359)
+.... . ..-..+.|+++.+|+...+++.| |++...+.+
T Consensus 108 ~~~~~-------------------------~-----~~~~~~~~~~s~~~~~~~l~~~G-f~~~~~~~~ 145 (224)
T smart00828 108 NLLSA-------------------------I-----EHEETTSYLVTREEWAELLARNN-LRVVEGVDA 145 (224)
T ss_pred ccCcc-------------------------c-----cccccccccCCHHHHHHHHHHCC-CeEEEeEEC
Confidence 21100 0 00112346899999999999999 999887776
No 25
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=98.94 E-value=1.3e-08 Score=99.90 Aligned_cols=145 Identities=17% Similarity=0.216 Sum_probs=95.9
Q ss_pred cceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCCCcccccccCcccccCCCC
Q 018250 57 YTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPPRKYYAAGVPGSFHGRLFP 136 (359)
Q Consensus 57 ~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~~~~~vpgsfy~~l~p 136 (359)
...+|+|+|||+|..++.++ +.. +..+++..|+..++....-+..+...+ .-+.++..+..++
T Consensus 113 ~~~~VLDLGcGtG~~~l~La--------~~~-------~~~~VtgVD~S~~mL~~A~~k~~~~~i--~~i~gD~e~lp~~ 175 (340)
T PLN02490 113 RNLKVVDVGGGTGFTTLGIV--------KHV-------DAKNVTILDQSPHQLAKAKQKEPLKEC--KIIEGDAEDLPFP 175 (340)
T ss_pred CCCEEEEEecCCcHHHHHHH--------HHC-------CCCEEEEEECCHHHHHHHHHhhhccCC--eEEeccHHhCCCC
Confidence 35799999999999888774 222 235899999987665544333221111 1244677666788
Q ss_pred CCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceeEEEecc
Q 018250 137 KSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLMVFSLIT 216 (359)
Q Consensus 137 ~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lvl~~~g 216 (359)
++++|+++|+.++|++.+. ...|+.-.+-|+|||++++.-..
T Consensus 176 ~~sFDvVIs~~~L~~~~d~--------------------------------------~~~L~e~~rvLkPGG~LvIi~~~ 217 (340)
T PLN02490 176 TDYADRYVSAGSIEYWPDP--------------------------------------QRGIKEAYRVLKIGGKACLIGPV 217 (340)
T ss_pred CCceeEEEEcChhhhCCCH--------------------------------------HHHHHHHHHhcCCCcEEEEEEec
Confidence 9999999999999985421 13566778999999999876332
Q ss_pred CCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCChhhhccCCccccCCCHHHHHHHHHhCCceeEeEEEEe
Q 018250 217 GPSGIPFADTVQGATYNFLGSCLWDLAKMGVISEEKARTFNVPAYFPYVEELESLIQRNGHFAMERMQQL 286 (359)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~l~~al~~lv~eGli~~e~~d~f~~P~y~ps~~E~~~~i~~~G~F~i~~le~~ 286 (359)
..+ .+ +...+.++ -..+++.+|+.+.+++.| |+..+++..
T Consensus 218 ~p~-----------~~--~~r~~~~~----------------~~~~~t~eEl~~lL~~aG-F~~V~i~~i 257 (340)
T PLN02490 218 HPT-----------FW--LSRFFADV----------------WMLFPKEEEYIEWFTKAG-FKDVKLKRI 257 (340)
T ss_pred Ccc-----------hh--HHHHhhhh----------------hccCCCHHHHHHHHHHCC-CeEEEEEEc
Confidence 111 00 01001110 013589999999999999 998877765
No 26
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=98.93 E-value=1.1e-07 Score=95.01 Aligned_cols=145 Identities=14% Similarity=0.202 Sum_probs=95.4
Q ss_pred ceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCCCcccccccCcccccCCCCC
Q 018250 58 TVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPPRKYYAAGVPGSFHGRLFPK 137 (359)
Q Consensus 58 ~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~~~~~vpgsfy~~l~p~ 137 (359)
..+|+|+|||+|..++.++ +.+ ..+|+..|+........-+...... +....+++ ..+ +
T Consensus 168 g~rVLDIGcG~G~~a~~la--------~~~--------g~~V~giDlS~~~l~~A~~~~~~l~--v~~~~~D~-~~l--~ 226 (383)
T PRK11705 168 GMRVLDIGCGWGGLARYAA--------EHY--------GVSVVGVTISAEQQKLAQERCAGLP--VEIRLQDY-RDL--N 226 (383)
T ss_pred CCEEEEeCCCccHHHHHHH--------HHC--------CCEEEEEeCCHHHHHHHHHHhccCe--EEEEECch-hhc--C
Confidence 4699999999999888774 222 2478888988766554433332111 11112233 222 5
Q ss_pred CceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceeEEEeccC
Q 018250 138 STLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLMVFSLITG 217 (359)
Q Consensus 138 ~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lvl~~~g~ 217 (359)
+++|.|+|...++|+.. +++..+|+.-.+-|+|||++++..++.
T Consensus 227 ~~fD~Ivs~~~~ehvg~------------------------------------~~~~~~l~~i~r~LkpGG~lvl~~i~~ 270 (383)
T PRK11705 227 GQFDRIVSVGMFEHVGP------------------------------------KNYRTYFEVVRRCLKPDGLFLLHTIGS 270 (383)
T ss_pred CCCCEEEEeCchhhCCh------------------------------------HHHHHHHHHHHHHcCCCcEEEEEEccC
Confidence 78999999999988521 245567888899999999999998876
Q ss_pred CCCCCCCCcchhHHHHHHHHHHHHHHHcCCCChhhhccCCccc-cCCCHHHHHHHHHhCCceeEeEEEEe
Q 018250 218 PSGIPFADTVQGATYNFLGSCLWDLAKMGVISEEKARTFNVPA-YFPYVEELESLIQRNGHFAMERMQQL 286 (359)
Q Consensus 218 ~~~~~~~~~~~~~~~~~l~~al~~lv~eGli~~e~~d~f~~P~-y~ps~~E~~~~i~~~G~F~i~~le~~ 286 (359)
+....... .-++.+.+|. +.|+.+++....+ .| |++..++.+
T Consensus 271 ~~~~~~~~-------------------------~~i~~yifp~g~lps~~~i~~~~~-~~-~~v~d~~~~ 313 (383)
T PRK11705 271 NKTDTNVD-------------------------PWINKYIFPNGCLPSVRQIAQASE-GL-FVMEDWHNF 313 (383)
T ss_pred CCCCCCCC-------------------------CCceeeecCCCcCCCHHHHHHHHH-CC-cEEEEEecC
Confidence 64211100 1112344553 6899999999877 46 998888765
No 27
>PRK06202 hypothetical protein; Provisional
Probab=98.87 E-value=2.1e-08 Score=92.96 Aligned_cols=164 Identities=14% Similarity=0.097 Sum_probs=95.7
Q ss_pred CcceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCCCcc-cccccCcccccCC
Q 018250 56 SYTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPPRKY-YAAGVPGSFHGRL 134 (359)
Q Consensus 56 ~~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~-~~~~vpgsfy~~l 134 (359)
.+..+|+|+|||+|.++..+.. ..+.. .|..+++..|+..++....-+....... +..+.. ....
T Consensus 59 ~~~~~iLDlGcG~G~~~~~L~~--------~~~~~---g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~---~~l~ 124 (232)
T PRK06202 59 DRPLTLLDIGCGGGDLAIDLAR--------WARRD---GLRLEVTAIDPDPRAVAFARANPRRPGVTFRQAVS---DELV 124 (232)
T ss_pred CCCcEEEEeccCCCHHHHHHHH--------HHHhC---CCCcEEEEEcCCHHHHHHHHhccccCCCeEEEEec---cccc
Confidence 3467999999999998887642 22111 2457999999988765544333221111 222211 1122
Q ss_pred CCCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceeEEEe
Q 018250 135 FPKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLMVFSL 214 (359)
Q Consensus 135 ~p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lvl~~ 214 (359)
++++++|+++|+.+|||+.+. ++..+|+.-++-++ |.+++.-
T Consensus 125 ~~~~~fD~V~~~~~lhh~~d~------------------------------------~~~~~l~~~~r~~~--~~~~i~d 166 (232)
T PRK06202 125 AEGERFDVVTSNHFLHHLDDA------------------------------------EVVRLLADSAALAR--RLVLHND 166 (232)
T ss_pred ccCCCccEEEECCeeecCChH------------------------------------HHHHHHHHHHHhcC--eeEEEec
Confidence 478999999999999997531 23346666666665 5566665
Q ss_pred ccCCCCCCCCCcchhHHHHHHHHHHHHHHHcC-CCChhhhccCCccccCCCHHHHHHHHHhCCceeEeEEEEee
Q 018250 215 ITGPSGIPFADTVQGATYNFLGSCLWDLAKMG-VISEEKARTFNVPAYFPYVEELESLIQRNGHFAMERMQQLD 287 (359)
Q Consensus 215 ~g~~~~~~~~~~~~~~~~~~l~~al~~lv~eG-li~~e~~d~f~~P~y~ps~~E~~~~i~~~G~F~i~~le~~~ 287 (359)
+.++.. .+.... ........| .+.. |....-.-++|.+|+.+.+++ | |++.+...|.
T Consensus 167 l~~~~~----------~~~~~~-~~~~~~~~~~~~~~---d~~~s~~~~~~~~el~~ll~~-G-f~~~~~~~~~ 224 (232)
T PRK06202 167 LIRSRL----------AYALFW-AGTRLLSRSSFVHT---DGLLSVRRSYTPAELAALAPQ-G-WRVERQWPFR 224 (232)
T ss_pred cccCHH----------HHHHHH-HHHHHhccCceeec---cchHHHHhhcCHHHHHHHhhC-C-CeEEecccee
Confidence 555421 111111 111111112 2221 222333468999999999998 8 9998877763
No 28
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=98.87 E-value=3.2e-08 Score=90.65 Aligned_cols=196 Identities=19% Similarity=0.275 Sum_probs=123.1
Q ss_pred ceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCC---CcccccccCcccccCC
Q 018250 58 TVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPP---RKYYAAGVPGSFHGRL 134 (359)
Q Consensus 58 ~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~---~~~~~~~vpgsfy~~l 134 (359)
.-.++|||||-|+.+..+...-| -+++..|....+-.+-...-.+ .+||+.- .+.|
T Consensus 73 fp~a~diGcs~G~v~rhl~~e~v----------------ekli~~DtS~~M~~s~~~~qdp~i~~~~~v~D-----EE~L 131 (325)
T KOG2940|consen 73 FPTAFDIGCSLGAVKRHLRGEGV----------------EKLIMMDTSYDMIKSCRDAQDPSIETSYFVGD-----EEFL 131 (325)
T ss_pred CcceeecccchhhhhHHHHhcch----------------hheeeeecchHHHHHhhccCCCceEEEEEecc-----hhcc
Confidence 56789999999998887742211 2556667665444332222111 2344332 2444
Q ss_pred -CCCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceeEEE
Q 018250 135 -FPKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLMVFS 213 (359)
Q Consensus 135 -~p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lvl~ 213 (359)
|-++|+|++.||.++||..++|... . .....|||.|.|+.+
T Consensus 132 df~ens~DLiisSlslHW~NdLPg~m-------------------------------------~-~ck~~lKPDg~Fias 173 (325)
T KOG2940|consen 132 DFKENSVDLIISSLSLHWTNDLPGSM-------------------------------------I-QCKLALKPDGLFIAS 173 (325)
T ss_pred cccccchhhhhhhhhhhhhccCchHH-------------------------------------H-HHHHhcCCCccchhH
Confidence 8999999999999999999998642 2 357889999999999
Q ss_pred eccCCCCCCCCCcchhHHHH-HHHHHHHHHHHcCCCChhhhccCCccccCCCHHHHHHHHHhCCceeEeEEEEeecCCCC
Q 018250 214 LITGPSGIPFADTVQGATYN-FLGSCLWDLAKMGVISEEKARTFNVPAYFPYVEELESLIQRNGHFAMERMQQLDQPMRH 292 (359)
Q Consensus 214 ~~g~~~~~~~~~~~~~~~~~-~l~~al~~lv~eGli~~e~~d~f~~P~y~ps~~E~~~~i~~~G~F~i~~le~~~~~~~~ 292 (359)
++|-++ +++ -+.-.|.+|-.+|-|++. ..| |-...++-.++.++| |....+.+-+....+
T Consensus 174 mlggdT-----------LyELR~slqLAelER~GGiSph-----iSP--f~qvrDiG~LL~rAG-F~m~tvDtDEi~v~Y 234 (325)
T KOG2940|consen 174 MLGGDT-----------LYELRCSLQLAELEREGGISPH-----ISP--FTQVRDIGNLLTRAG-FSMLTVDTDEIVVGY 234 (325)
T ss_pred Hhcccc-----------HHHHHHHhhHHHHHhccCCCCC-----cCh--hhhhhhhhhHHhhcC-cccceecccceeecC
Confidence 998776 222 233456688888877632 111 235678888999999 988777765444334
Q ss_pred CCCChhHHHHHHHHHhhhhh--h--hccCHHHHHHHHHHHHHHHH
Q 018250 293 KTFPAQFYLSHLRAVLEGLI--G--KHFGEELLENIFNHINTKEA 333 (359)
Q Consensus 293 ~~~~~~~v~~~iRa~~~~~l--~--~~~~e~i~delf~r~~~~~~ 333 (359)
. ..-.+...+++..|.-- . .++..+.+-.--.-|.+.++
T Consensus 235 p--~mfeLm~dLq~MgEsn~~~~Rn~~l~Ret~vAaaAiY~smya 277 (325)
T KOG2940|consen 235 P--RMFELMEDLQGMGESNAALNRNAILNRETMVAAAAIYQSMYA 277 (325)
T ss_pred c--hHHHHHHHHHhhcccchhhccCccccHHHHHHHHHHHHHHhc
Confidence 1 12355666777665322 1 34555554444444544444
No 29
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=98.85 E-value=1.2e-07 Score=86.13 Aligned_cols=165 Identities=16% Similarity=0.201 Sum_probs=98.8
Q ss_pred cceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCC--CcccccccCcccccCC
Q 018250 57 YTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPP--RKYYAAGVPGSFHGRL 134 (359)
Q Consensus 57 ~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~--~~~~~~~vpgsfy~~l 134 (359)
...+|+|+|||+|..+..++ +.++ ...+++..|+........-+..+. +--+. .+++.+..
T Consensus 39 ~~~~vldiG~G~G~~~~~~~--------~~~~------~~~~~~~iD~~~~~~~~~~~~~~~~~~i~~~---~~d~~~~~ 101 (223)
T TIGR01934 39 KGQKVLDVACGTGDLAIELA--------KSAP------DRGKVTGVDFSSEMLEVAKKKSELPLNIEFI---QADAEALP 101 (223)
T ss_pred CCCeEEEeCCCCChhHHHHH--------HhcC------CCceEEEEECCHHHHHHHHHHhccCCCceEE---ecchhcCC
Confidence 45799999999999888774 2221 125788889865443333222221 11122 24666666
Q ss_pred CCCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceeEEEe
Q 018250 135 FPKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLMVFSL 214 (359)
Q Consensus 135 ~p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lvl~~ 214 (359)
++++++|+++++..+|+..+ ...+|+...+.|+|||++++.-
T Consensus 102 ~~~~~~D~i~~~~~~~~~~~--------------------------------------~~~~l~~~~~~L~~gG~l~~~~ 143 (223)
T TIGR01934 102 FEDNSFDAVTIAFGLRNVTD--------------------------------------IQKALREMYRVLKPGGRLVILE 143 (223)
T ss_pred CCCCcEEEEEEeeeeCCccc--------------------------------------HHHHHHHHHHHcCCCcEEEEEE
Confidence 78889999999999998543 2346778889999999999866
Q ss_pred ccCCCCCCCCCcchhHHHHHHHHHHHHHHH---cCCCChhhhccCC----ccccCCCHHHHHHHHHhCCceeEeEEEEee
Q 018250 215 ITGPSGIPFADTVQGATYNFLGSCLWDLAK---MGVISEEKARTFN----VPAYFPYVEELESLIQRNGHFAMERMQQLD 287 (359)
Q Consensus 215 ~g~~~~~~~~~~~~~~~~~~l~~al~~lv~---eGli~~e~~d~f~----~P~y~ps~~E~~~~i~~~G~F~i~~le~~~ 287 (359)
.-..... .+..+.+.+..... .+..... .+.+. ....+++.+|+..++++.| |++...+...
T Consensus 144 ~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~aG-f~~~~~~~~~ 212 (223)
T TIGR01934 144 FSKPANA---------LLKKFYKFYLKNVLPSIGGLISKN-AEAYTYLPESIRAFPSQEELAAMLKEAG-FEEVRYRSLT 212 (223)
T ss_pred ecCCCch---------hhHHHHHHHHHHhhhhhhhhhcCC-chhhHHHHHHHHhCCCHHHHHHHHHHcC-Cccceeeeee
Confidence 5333211 11222222221110 0000000 01110 1123679999999999999 9988777653
No 30
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=98.85 E-value=5.9e-09 Score=96.83 Aligned_cols=173 Identities=17% Similarity=0.167 Sum_probs=106.8
Q ss_pred CcceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCCCcccc----cccCcccc
Q 018250 56 SYTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPPRKYYA----AGVPGSFH 131 (359)
Q Consensus 56 ~~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~~~----~~vpgsfy 131 (359)
....+++|++||||-.|+.++..+-+ +. ...+-.|+..|+-.++.+---+.-..+.++. .-+.|+..
T Consensus 99 ~~~m~~lDvaGGTGDiaFril~~v~s----~~-----~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE 169 (296)
T KOG1540|consen 99 GKGMKVLDVAGGTGDIAFRILRHVKS----QF-----GDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAE 169 (296)
T ss_pred CCCCeEEEecCCcchhHHHHHHhhcc----cc-----CCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCcc
Confidence 44699999999999999998643221 11 1234689999999888665433221122222 12346888
Q ss_pred cCCCCCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceeE
Q 018250 132 GRLFPKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLMV 211 (359)
Q Consensus 132 ~~l~p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lv 211 (359)
...||++|+|...+++.+.-+.+++++ |+--++.|||||+|.
T Consensus 170 ~LpFdd~s~D~yTiafGIRN~th~~k~--------------------------------------l~EAYRVLKpGGrf~ 211 (296)
T KOG1540|consen 170 DLPFDDDSFDAYTIAFGIRNVTHIQKA--------------------------------------LREAYRVLKPGGRFS 211 (296)
T ss_pred cCCCCCCcceeEEEecceecCCCHHHH--------------------------------------HHHHHHhcCCCcEEE
Confidence 888999999999999998876655443 233468999999999
Q ss_pred EEeccCCCCCCCCCcchhHH---HHHHHHHHHHHHHcCCCChhhhccCCccccCCCHHHHHHHHHhCCceeEeE
Q 018250 212 FSLITGPSGIPFADTVQGAT---YNFLGSCLWDLAKMGVISEEKARTFNVPAYFPYVEELESLIQRNGHFAMER 282 (359)
Q Consensus 212 l~~~g~~~~~~~~~~~~~~~---~~~l~~al~~lv~eGli~~e~~d~f~~P~y~ps~~E~~~~i~~~G~F~i~~ 282 (359)
+.-+..-+..+......... .-.+.+.+....+.+..=-+ +.+ -||+.+|+...|+++| |....
T Consensus 212 cLeFskv~~~~l~~fy~~ysf~VlpvlG~~iagd~~sYqYLve---SI~---rfp~qe~f~~miedaG-F~~~~ 278 (296)
T KOG1540|consen 212 CLEFSKVENEPLKWFYDQYSFDVLPVLGEIIAGDRKSYQYLVE---SIR---RFPPQEEFASMIEDAG-FSSVN 278 (296)
T ss_pred EEEccccccHHHHHHHHhhhhhhhchhhHhhhhhHhhhhhHHh---hhh---cCCCHHHHHHHHHHcC-Ccccc
Confidence 88887655222110000011 11222222222222211111 111 5799999999999999 88765
No 31
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=98.82 E-value=9.4e-08 Score=90.94 Aligned_cols=166 Identities=19% Similarity=0.228 Sum_probs=97.7
Q ss_pred cceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCCCcccccccCcccccCCCC
Q 018250 57 YTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPPRKYYAAGVPGSFHGRLFP 136 (359)
Q Consensus 57 ~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~~~~~vpgsfy~~l~p 136 (359)
...+|+|+|||+|..+..+. +..+. ....+++..|+..+.....-+..+. --|.. ++..+..|+
T Consensus 85 ~~~~vLDiGcG~G~~~~~l~--------~~~~~----~~~~~v~giD~s~~~l~~A~~~~~~-~~~~~---~d~~~lp~~ 148 (272)
T PRK11088 85 KATALLDIGCGEGYYTHALA--------DALPE----ITTMQLFGLDISKVAIKYAAKRYPQ-VTFCV---ASSHRLPFA 148 (272)
T ss_pred CCCeEEEECCcCCHHHHHHH--------Hhccc----ccCCeEEEECCCHHHHHHHHHhCCC-CeEEE---eecccCCCc
Confidence 35689999999999988874 22211 1124789999988766554443332 11222 355566689
Q ss_pred CCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceeEEEecc
Q 018250 137 KSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLMVFSLIT 216 (359)
Q Consensus 137 ~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lvl~~~g 216 (359)
++++|+|+|.++ |.. ++.-++.|+|||+|++..++
T Consensus 149 ~~sfD~I~~~~~-------~~~--------------------------------------~~e~~rvLkpgG~li~~~p~ 183 (272)
T PRK11088 149 DQSLDAIIRIYA-------PCK--------------------------------------AEELARVVKPGGIVITVTPG 183 (272)
T ss_pred CCceeEEEEecC-------CCC--------------------------------------HHHHHhhccCCCEEEEEeCC
Confidence 999999998654 211 11235689999999998876
Q ss_pred CCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCChhhhccCCccccCCCHHHHHHHHHhCCceeEeEEEEeecCCCCCCCC
Q 018250 217 GPSGIPFADTVQGATYNFLGSCLWDLAKMGVISEEKARTFNVPAYFPYVEELESLIQRNGHFAMERMQQLDQPMRHKTFP 296 (359)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~l~~al~~lv~eGli~~e~~d~f~~P~y~ps~~E~~~~i~~~G~F~i~~le~~~~~~~~~~~~ 296 (359)
... +++ +++++.+ .|...+...+ ...| |++.+.+.+.....+ +
T Consensus 184 ~~~-----------l~e-----l~~~~~~------------~~~~~~~~~~-----~~~g-F~~~~~~~~~~~~~l---~ 226 (272)
T PRK11088 184 PRH-----------LFE-----LKGLIYD------------EVRLHAPEAE-----QLEG-FELQHSERLAYPMRL---T 226 (272)
T ss_pred Ccc-----------hHH-----HHHHhcc------------cccccccchh-----hccC-CCeeeEEEEEEEEEe---C
Confidence 543 222 2222211 1112222222 1256 999888887666555 3
Q ss_pred hhHHHHHHHHHhhhhhhhccCHHHHHH
Q 018250 297 AQFYLSHLRAVLEGLIGKHFGEELLEN 323 (359)
Q Consensus 297 ~~~v~~~iRa~~~~~l~~~~~e~i~de 323 (359)
+.....|+++ .|+.. +.+++..++
T Consensus 227 ~~~~~~ll~m--tP~~~-~~~~e~~~~ 250 (272)
T PRK11088 227 GSEAVALLQM--TPFAW-KATPEVKQQ 250 (272)
T ss_pred HHHHHHHHcC--Ccccc-CCCHHHHHH
Confidence 3444457774 25554 466666554
No 32
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=98.82 E-value=3.5e-08 Score=90.72 Aligned_cols=164 Identities=20% Similarity=0.203 Sum_probs=99.0
Q ss_pred ceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCCCcc--cccccCcccccCCC
Q 018250 58 TVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPPRKY--YAAGVPGSFHGRLF 135 (359)
Q Consensus 58 ~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~--~~~~vpgsfy~~l~ 135 (359)
..+|+|+|||+|..+..++ +.++ +..+++..|+..+.....-+....... -+.-+.+++.+..+
T Consensus 52 ~~~vldiG~G~G~~~~~l~--------~~~~------~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~ 117 (239)
T PRK00216 52 GDKVLDLACGTGDLAIALA--------KAVG------KTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALPF 117 (239)
T ss_pred CCeEEEeCCCCCHHHHHHH--------HHcC------CCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCCC
Confidence 4799999999999888774 2221 246899999977554443333221000 01112246666667
Q ss_pred CCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceeEEEec
Q 018250 136 PKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLMVFSLI 215 (359)
Q Consensus 136 p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lvl~~~ 215 (359)
+++++|++++++++|++++. ..+|+...+-|+|||++++...
T Consensus 118 ~~~~~D~I~~~~~l~~~~~~--------------------------------------~~~l~~~~~~L~~gG~li~~~~ 159 (239)
T PRK00216 118 PDNSFDAVTIAFGLRNVPDI--------------------------------------DKALREMYRVLKPGGRLVILEF 159 (239)
T ss_pred CCCCccEEEEecccccCCCH--------------------------------------HHHHHHHHHhccCCcEEEEEEe
Confidence 78899999999999986542 2366677889999999988766
Q ss_pred cCCCCCCCCCcchhHHHHHHHHHHHH--------HHHcCCCChhhhcc-CCccccCCCHHHHHHHHHhCCceeEeEEEEe
Q 018250 216 TGPSGIPFADTVQGATYNFLGSCLWD--------LAKMGVISEEKART-FNVPAYFPYVEELESLIQRNGHFAMERMQQL 286 (359)
Q Consensus 216 g~~~~~~~~~~~~~~~~~~l~~al~~--------lv~eGli~~e~~d~-f~~P~y~ps~~E~~~~i~~~G~F~i~~le~~ 286 (359)
..+.... +..+.+.+.. ...... +..+. ...--.+++.+++..+++++| |++.+...+
T Consensus 160 ~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~~aG-f~~~~~~~~ 226 (239)
T PRK00216 160 SKPTNPP---------LKKAYDFYLFKVLPLIGKLISKNA---EAYSYLAESIRAFPDQEELAAMLEEAG-FERVRYRNL 226 (239)
T ss_pred cCCCchH---------HHHHHHHHHHhhhHHHHHHHcCCc---HHHHHHHHHHHhCCCHHHHHHHHHhCC-Cceeeeeee
Confidence 5443210 1111111111 111100 00000 001124679999999999999 998777765
No 33
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=98.81 E-value=3e-08 Score=90.01 Aligned_cols=138 Identities=17% Similarity=0.211 Sum_probs=86.6
Q ss_pred ceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCCCcc-cccccCcccccCCCC
Q 018250 58 TVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPPRKY-YAAGVPGSFHGRLFP 136 (359)
Q Consensus 58 ~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~-~~~~vpgsfy~~l~p 136 (359)
..+|+|+|||+|.+++.++ ++ ..+|+.-|+..+.-..+-+....... .+..+.+++....+
T Consensus 31 ~~~vLDiGcG~G~~a~~La--------~~---------g~~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~~~~- 92 (197)
T PRK11207 31 PGKTLDLGCGNGRNSLYLA--------AN---------GFDVTAWDKNPMSIANLERIKAAENLDNLHTAVVDLNNLTF- 92 (197)
T ss_pred CCcEEEECCCCCHHHHHHH--------HC---------CCEEEEEeCCHHHHHHHHHHHHHcCCCcceEEecChhhCCc-
Confidence 4789999999999998885 21 24788889976543332222211111 12222335533334
Q ss_pred CCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceeEEE-ec
Q 018250 137 KSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLMVFS-LI 215 (359)
Q Consensus 137 ~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lvl~-~~ 215 (359)
++++|+|+|+.++||+.. .|...+++.-++-|+|||++++. .+
T Consensus 93 ~~~fD~I~~~~~~~~~~~------------------------------------~~~~~~l~~i~~~LkpgG~~~~~~~~ 136 (197)
T PRK11207 93 DGEYDFILSTVVLMFLEA------------------------------------KTIPGLIANMQRCTKPGGYNLIVAAM 136 (197)
T ss_pred CCCcCEEEEecchhhCCH------------------------------------HHHHHHHHHHHHHcCCCcEEEEEEEe
Confidence 467999999999999642 14556888889999999996554 43
Q ss_pred cCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCChhhhccCCccccCCCHHHHHHHHHhCCceeEeEEEE
Q 018250 216 TGPSGIPFADTVQGATYNFLGSCLWDLAKMGVISEEKARTFNVPAYFPYVEELESLIQRNGHFAMERMQQ 285 (359)
Q Consensus 216 g~~~~~~~~~~~~~~~~~~l~~al~~lv~eGli~~e~~d~f~~P~y~ps~~E~~~~i~~~G~F~i~~le~ 285 (359)
...+. +. . .-|.+..+.+|+.+.++ | |++.+.+.
T Consensus 137 ~~~~~-~~-------------------------------~-~~~~~~~~~~el~~~~~--~-~~~~~~~~ 170 (197)
T PRK11207 137 DTADY-PC-------------------------------T-VGFPFAFKEGELRRYYE--G-WEMVKYNE 170 (197)
T ss_pred cCCCC-CC-------------------------------C-CCCCCccCHHHHHHHhC--C-CeEEEeeC
Confidence 32211 00 0 01235678999998887 6 98876643
No 34
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=98.80 E-value=5.8e-08 Score=92.07 Aligned_cols=154 Identities=18% Similarity=0.130 Sum_probs=94.6
Q ss_pred cceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCCCcc-cccccCcccccCCC
Q 018250 57 YTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPPRKY-YAAGVPGSFHGRLF 135 (359)
Q Consensus 57 ~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~-~~~~vpgsfy~~l~ 135 (359)
...+|+|+|||+|..++.++ +.. .+..+|+..|+..+.....-+......+ -+.-+.+++....+
T Consensus 77 ~g~~VLDiG~G~G~~~~~~a--------~~~------g~~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~~~l~~ 142 (272)
T PRK11873 77 PGETVLDLGSGGGFDCFLAA--------RRV------GPTGKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEIEALPV 142 (272)
T ss_pred CCCEEEEeCCCCCHHHHHHH--------HHh------CCCCEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcchhhCCC
Confidence 35699999999998877653 222 1345899999977665544332211000 11122356655567
Q ss_pred CCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceeEEEec
Q 018250 136 PKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLMVFSLI 215 (359)
Q Consensus 136 p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lvl~~~ 215 (359)
|++++|+++|+.++||.... ...|+.-.+-|+|||++++.-+
T Consensus 143 ~~~~fD~Vi~~~v~~~~~d~--------------------------------------~~~l~~~~r~LkpGG~l~i~~~ 184 (272)
T PRK11873 143 ADNSVDVIISNCVINLSPDK--------------------------------------ERVFKEAFRVLKPGGRFAISDV 184 (272)
T ss_pred CCCceeEEEEcCcccCCCCH--------------------------------------HHHHHHHHHHcCCCcEEEEEEe
Confidence 89999999999999995321 1245556788999999999765
Q ss_pred cCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCChhhhccCCccccCCCHHHHHHHHHhCCceeEeEEEEe
Q 018250 216 TGPSGIPFADTVQGATYNFLGSCLWDLAKMGVISEEKARTFNVPAYFPYVEELESLIQRNGHFAMERMQQL 286 (359)
Q Consensus 216 g~~~~~~~~~~~~~~~~~~l~~al~~lv~eGli~~e~~d~f~~P~y~ps~~E~~~~i~~~G~F~i~~le~~ 286 (359)
...... ...+...+. +. .|. .....+.+|+.+++++.| |...++...
T Consensus 185 ~~~~~~----------~~~~~~~~~-~~-~~~-----------~~~~~~~~e~~~~l~~aG-f~~v~i~~~ 231 (272)
T PRK11873 185 VLRGEL----------PEEIRNDAE-LY-AGC-----------VAGALQEEEYLAMLAEAG-FVDITIQPK 231 (272)
T ss_pred eccCCC----------CHHHHHhHH-HH-hcc-----------ccCCCCHHHHHHHHHHCC-CCceEEEec
Confidence 332211 112222222 11 011 113457899999999999 987766543
No 35
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=98.76 E-value=5.1e-08 Score=88.31 Aligned_cols=139 Identities=13% Similarity=0.200 Sum_probs=85.8
Q ss_pred ceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCCCcccccccCcccccCCCCC
Q 018250 58 TVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPPRKYYAAGVPGSFHGRLFPK 137 (359)
Q Consensus 58 ~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~~~~~vpgsfy~~l~p~ 137 (359)
+.+|+|+|||+|.+++.++ ++ ..+|+.-|+..+.-..+-+.......=+....++.....+ +
T Consensus 31 ~~~vLDiGcG~G~~a~~la--------~~---------g~~V~~iD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~-~ 92 (195)
T TIGR00477 31 PCKTLDLGCGQGRNSLYLS--------LA---------GYDVRAWDHNPASIASVLDMKARENLPLRTDAYDINAAAL-N 92 (195)
T ss_pred CCcEEEeCCCCCHHHHHHH--------HC---------CCeEEEEECCHHHHHHHHHHHHHhCCCceeEeccchhccc-c
Confidence 4699999999999999885 21 2488999998755544322221111001111122222123 4
Q ss_pred CceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceeEEEeccC
Q 018250 138 STLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLMVFSLITG 217 (359)
Q Consensus 138 ~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lvl~~~g~ 217 (359)
+++|+++|+.++||++. .++..+++..++-|+|||++++.....
T Consensus 93 ~~fD~I~~~~~~~~~~~------------------------------------~~~~~~l~~~~~~LkpgG~lli~~~~~ 136 (195)
T TIGR00477 93 EDYDFIFSTVVFMFLQA------------------------------------GRVPEIIANMQAHTRPGGYNLIVAAMD 136 (195)
T ss_pred CCCCEEEEecccccCCH------------------------------------HHHHHHHHHHHHHhCCCcEEEEEEecc
Confidence 68999999999999642 145567888899999999966544322
Q ss_pred CCCCCCCCcchhHHHHHHHHHHHHHHHcCCCChhhhccCCccccCCCHHHHHHHHHhCCceeEeEEEE
Q 018250 218 PSGIPFADTVQGATYNFLGSCLWDLAKMGVISEEKARTFNVPAYFPYVEELESLIQRNGHFAMERMQQ 285 (359)
Q Consensus 218 ~~~~~~~~~~~~~~~~~l~~al~~lv~eGli~~e~~d~f~~P~y~ps~~E~~~~i~~~G~F~i~~le~ 285 (359)
.+..+. | ..+.|-.+.+|+++.+. + |++.+.+.
T Consensus 137 ~~~~~~----------------------~----------~~~~~~~~~~el~~~f~--~-~~~~~~~e 169 (195)
T TIGR00477 137 TADYPC----------------------H----------MPFSFTFKEDELRQYYA--D-WELLKYNE 169 (195)
T ss_pred cCCCCC----------------------C----------CCcCccCCHHHHHHHhC--C-CeEEEeec
Confidence 211000 0 01236688999998885 4 88876664
No 36
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=98.71 E-value=3.7e-06 Score=80.29 Aligned_cols=167 Identities=19% Similarity=0.320 Sum_probs=90.7
Q ss_pred ceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCC----Ccc-cccccCccccc
Q 018250 58 TVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPP----RKY-YAAGVPGSFHG 132 (359)
Q Consensus 58 ~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~----~~~-~~~~vpgsfy~ 132 (359)
-.+|||+|||-|..++.+++ ++ ..+|....|..+-..-.-+.+.. ..+ ... .+|.
T Consensus 63 G~~vLDiGcGwG~~~~~~a~--------~~--------g~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~---~D~~- 122 (273)
T PF02353_consen 63 GDRVLDIGCGWGGLAIYAAE--------RY--------GCHVTGITLSEEQAEYARERIREAGLEDRVEVRL---QDYR- 122 (273)
T ss_dssp T-EEEEES-TTSHHHHHHHH--------HH----------EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEE---S-GG-
T ss_pred CCEEEEeCCCccHHHHHHHH--------Hc--------CcEEEEEECCHHHHHHHHHHHHhcCCCCceEEEE---eecc-
Confidence 47999999999999998863 32 13455555544333222111111 111 111 1332
Q ss_pred CCCCCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceeEE
Q 018250 133 RLFPKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLMVF 212 (359)
Q Consensus 133 ~l~p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lvl 212 (359)
. ++. ++|-|+|.-++.-+. .+++..|++.-++-|+|||++++
T Consensus 123 ~-~~~-~fD~IvSi~~~Ehvg------------------------------------~~~~~~~f~~~~~~LkpgG~~~l 164 (273)
T PF02353_consen 123 D-LPG-KFDRIVSIEMFEHVG------------------------------------RKNYPAFFRKISRLLKPGGRLVL 164 (273)
T ss_dssp G-----S-SEEEEESEGGGTC------------------------------------GGGHHHHHHHHHHHSETTEEEEE
T ss_pred c-cCC-CCCEEEEEechhhcC------------------------------------hhHHHHHHHHHHHhcCCCcEEEE
Confidence 2 222 899999976665531 23677799999999999999999
Q ss_pred EeccCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCChhhhccCCccc-cCCCHHHHHHHHHhCCceeEeEEEEeecCCC
Q 018250 213 SLITGPSGIPFADTVQGATYNFLGSCLWDLAKMGVISEEKARTFNVPA-YFPYVEELESLIQRNGHFAMERMQQLDQPMR 291 (359)
Q Consensus 213 ~~~g~~~~~~~~~~~~~~~~~~l~~al~~lv~eGli~~e~~d~f~~P~-y~ps~~E~~~~i~~~G~F~i~~le~~~~~~~ 291 (359)
..++..+..... +.-.+.+-+..+.+|- +.|+.+|+...++..| |+|...+.+
T Consensus 165 q~i~~~~~~~~~--------------------~~~~~~~~i~kyiFPgg~lps~~~~~~~~~~~~-l~v~~~~~~----- 218 (273)
T PF02353_consen 165 QTITHRDPPYHA--------------------ERRSSSDFIRKYIFPGGYLPSLSEILRAAEDAG-LEVEDVENL----- 218 (273)
T ss_dssp EEEEE--HHHHH--------------------CTTCCCHHHHHHTSTTS---BHHHHHHHHHHTT--EEEEEEE------
T ss_pred Eecccccccchh--------------------hcCCCceEEEEeeCCCCCCCCHHHHHHHHhcCC-EEEEEEEEc-----
Confidence 988766521000 0000000111222333 6789999999999889 999888776
Q ss_pred CCCCChhHHHHHHHHHhhhhhh
Q 018250 292 HKTFPAQFYLSHLRAVLEGLIG 313 (359)
Q Consensus 292 ~~~~~~~~v~~~iRa~~~~~l~ 313 (359)
+..++..++.|.+.+.+
T Consensus 219 -----~~hY~~Tl~~W~~~f~~ 235 (273)
T PF02353_consen 219 -----GRHYARTLRAWRENFDA 235 (273)
T ss_dssp -----HHHHHHHHHHHHHHHHH
T ss_pred -----CcCHHHHHHHHHHHHHH
Confidence 34566666666666655
No 37
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=98.68 E-value=8.1e-08 Score=92.17 Aligned_cols=137 Identities=16% Similarity=0.237 Sum_probs=86.5
Q ss_pred eEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCCCcccccccCcccccCCCCCC
Q 018250 59 VRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPPRKYYAAGVPGSFHGRLFPKS 138 (359)
Q Consensus 59 ~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~~~~~vpgsfy~~l~p~~ 138 (359)
.+|+|+|||+|.+++.+++ . ..+|+.-|.....-..+-+.......-+..+.+++.... .++
T Consensus 122 ~~vLDlGcG~G~~~~~la~--------~---------g~~V~avD~s~~ai~~~~~~~~~~~l~v~~~~~D~~~~~-~~~ 183 (287)
T PRK12335 122 GKALDLGCGQGRNSLYLAL--------L---------GFDVTAVDINQQSLENLQEIAEKENLNIRTGLYDINSAS-IQE 183 (287)
T ss_pred CCEEEeCCCCCHHHHHHHH--------C---------CCEEEEEECCHHHHHHHHHHHHHcCCceEEEEechhccc-ccC
Confidence 4899999999999988842 1 257888888765544332222111111111122332222 268
Q ss_pred ceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceeEEEeccCC
Q 018250 139 TLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLMVFSLITGP 218 (359)
Q Consensus 139 s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lvl~~~g~~ 218 (359)
++|+|+|+.++|+++. .++..+|+...+-|+|||++++......
T Consensus 184 ~fD~I~~~~vl~~l~~------------------------------------~~~~~~l~~~~~~LkpgG~~l~v~~~~~ 227 (287)
T PRK12335 184 EYDFILSTVVLMFLNR------------------------------------ERIPAIIKNMQEHTNPGGYNLIVCAMDT 227 (287)
T ss_pred CccEEEEcchhhhCCH------------------------------------HHHHHHHHHHHHhcCCCcEEEEEEeccc
Confidence 9999999999999742 2556688888999999999776553222
Q ss_pred CCCCCCCcchhHHHHHHHHHHHHHHHcCCCChhhhccCCcc-ccCCCHHHHHHHHHhCCceeEeEEEE
Q 018250 219 SGIPFADTVQGATYNFLGSCLWDLAKMGVISEEKARTFNVP-AYFPYVEELESLIQRNGHFAMERMQQ 285 (359)
Q Consensus 219 ~~~~~~~~~~~~~~~~l~~al~~lv~eGli~~e~~d~f~~P-~y~ps~~E~~~~i~~~G~F~i~~le~ 285 (359)
+..+ ...| .+..+.+|+++.+. + |+|.+.+.
T Consensus 228 ~~~~---------------------------------~~~p~~~~~~~~el~~~~~--~-~~i~~~~e 259 (287)
T PRK12335 228 EDYP---------------------------------CPMPFSFTFKEGELKDYYQ--D-WEIVKYNE 259 (287)
T ss_pred ccCC---------------------------------CCCCCCcccCHHHHHHHhC--C-CEEEEEec
Confidence 2100 1122 35678999998875 3 88877753
No 38
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=98.63 E-value=2.9e-07 Score=84.01 Aligned_cols=141 Identities=19% Similarity=0.219 Sum_probs=96.9
Q ss_pred ccchHHhhHH---HHHHHHHHHHHHHHHHHhhhccCCCCCCCCcceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCC
Q 018250 17 TCSYAHNSQF---QRGTVDAAKELVREAIVNKLDVGSYGYDNSYTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLP 93 (359)
Q Consensus 17 ~~sY~~nS~~---Q~~~~~~~~~~l~~ai~~~~~~~~~~~~~~~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~ 93 (359)
+.-|.+||.+ |..+.+.++.++. ++ .+.+--|+|+|||||-.+-.+-
T Consensus 20 A~kYt~nsri~~IQ~em~eRaLELLa--------lp-----~~~~~~iLDIGCGsGLSg~vL~----------------- 69 (270)
T KOG1541|consen 20 APKYTQNSRIVLIQAEMAERALELLA--------LP-----GPKSGLILDIGCGSGLSGSVLS----------------- 69 (270)
T ss_pred hhhccccceeeeehHHHHHHHHHHhh--------CC-----CCCCcEEEEeccCCCcchheec-----------------
Confidence 4578899875 6777766666652 22 3457889999999998777651
Q ss_pred CCCceEEecCCCCCchHHHHH-hCCCCcccccccCcccccCCCCCCceeEEEecCcccccCCCCcccccccccccCCCce
Q 018250 94 VPDFQVFFNDHTENDFNTLFR-TLPPRKYYAAGVPGSFHGRLFPKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSI 172 (359)
Q Consensus 94 ~p~~~v~~nDLp~NDFn~lf~-~l~~~~~~~~~vpgsfy~~l~p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i 172 (359)
.+.-+++-.|...-|....-. .+. ..+..+-.+ .+..|++++||-++|-+|+|||=...+...+
T Consensus 70 ~~Gh~wiGvDiSpsML~~a~~~e~e-gdlil~DMG---~GlpfrpGtFDg~ISISAvQWLcnA~~s~~~----------- 134 (270)
T KOG1541|consen 70 DSGHQWIGVDISPSMLEQAVERELE-GDLILCDMG---EGLPFRPGTFDGVISISAVQWLCNADKSLHV----------- 134 (270)
T ss_pred cCCceEEeecCCHHHHHHHHHhhhh-cCeeeeecC---CCCCCCCCccceEEEeeeeeeecccCccccC-----------
Confidence 234578888888777554432 121 122222222 3566999999999999999997654332211
Q ss_pred eecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceeEEEeccCC
Q 018250 173 KCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLMVFSLITGP 218 (359)
Q Consensus 173 ~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lvl~~~g~~ 218 (359)
=++-+..|+..-..-|++|++-|+.+--..
T Consensus 135 ----------------P~~Rl~~FF~tLy~~l~rg~raV~QfYpen 164 (270)
T KOG1541|consen 135 ----------------PKKRLLRFFGTLYSCLKRGARAVLQFYPEN 164 (270)
T ss_pred ----------------hHHHHHHHhhhhhhhhccCceeEEEecccc
Confidence 135677899988999999999999996444
No 39
>PRK06922 hypothetical protein; Provisional
Probab=98.63 E-value=6.5e-08 Score=101.17 Aligned_cols=113 Identities=21% Similarity=0.192 Sum_probs=77.5
Q ss_pred ceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCC--Cc-ccccccCcccccC-
Q 018250 58 TVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPP--RK-YYAAGVPGSFHGR- 133 (359)
Q Consensus 58 ~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~--~~-~~~~~vpgsfy~~- 133 (359)
..+|+|+|||+|..+..++ +. .|..+++..|+..++-...-+..+. .. .++. ++....
T Consensus 419 g~rVLDIGCGTG~ls~~LA--------~~-------~P~~kVtGIDIS~~MLe~Ararl~~~g~~ie~I~---gDa~dLp 480 (677)
T PRK06922 419 GDTIVDVGAGGGVMLDMIE--------EE-------TEDKRIYGIDISENVIDTLKKKKQNEGRSWNVIK---GDAINLS 480 (677)
T ss_pred CCEEEEeCCCCCHHHHHHH--------Hh-------CCCCEEEEEECCHHHHHHHHHHhhhcCCCeEEEE---cchHhCc
Confidence 4799999999998877663 22 2567999999998776655443322 11 1222 344332
Q ss_pred -CCCCCceeEEEecCccccc-CCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceeE
Q 018250 134 -LFPKSTLHVVNSFNAMHWL-SKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLMV 211 (359)
Q Consensus 134 -l~p~~s~d~~~S~~alHWL-s~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lv 211 (359)
.||++++|++++++++||+ +.+|..- ..+| ..|...+|+.-.+.|||||+++
T Consensus 481 ~~fedeSFDvVVsn~vLH~L~syIp~~g-----~~f~---------------------~edl~kiLreI~RVLKPGGrLI 534 (677)
T PRK06922 481 SSFEKESVDTIVYSSILHELFSYIEYEG-----KKFN---------------------HEVIKKGLQSAYEVLKPGGRII 534 (677)
T ss_pred cccCCCCEEEEEEchHHHhhhhhccccc-----cccc---------------------HHHHHHHHHHHHHHcCCCcEEE
Confidence 2789999999999999974 4454210 0111 2467788999999999999999
Q ss_pred EEe
Q 018250 212 FSL 214 (359)
Q Consensus 212 l~~ 214 (359)
+.-
T Consensus 535 I~D 537 (677)
T PRK06922 535 IRD 537 (677)
T ss_pred EEe
Confidence 964
No 40
>PRK05785 hypothetical protein; Provisional
Probab=98.61 E-value=3.4e-07 Score=84.99 Aligned_cols=74 Identities=23% Similarity=0.233 Sum_probs=54.7
Q ss_pred ceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCCCcccccccCcccccCCCCC
Q 018250 58 TVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPPRKYYAAGVPGSFHGRLFPK 137 (359)
Q Consensus 58 ~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~~~~~vpgsfy~~l~p~ 137 (359)
..+|+|+|||||.++..+. +++ ..+|+..|+..++-...-.. .-+ +-+++....||+
T Consensus 52 ~~~VLDlGcGtG~~~~~l~--------~~~--------~~~v~gvD~S~~Ml~~a~~~----~~~---~~~d~~~lp~~d 108 (226)
T PRK05785 52 PKKVLDVAAGKGELSYHFK--------KVF--------KYYVVALDYAENMLKMNLVA----DDK---VVGSFEALPFRD 108 (226)
T ss_pred CCeEEEEcCCCCHHHHHHH--------Hhc--------CCEEEEECCCHHHHHHHHhc----cce---EEechhhCCCCC
Confidence 5799999999999988773 221 24899999988775543221 112 235777777999
Q ss_pred CceeEEEecCcccccCC
Q 018250 138 STLHVVNSFNAMHWLSK 154 (359)
Q Consensus 138 ~s~d~~~S~~alHWLs~ 154 (359)
+|+|+++|++++||+.+
T Consensus 109 ~sfD~v~~~~~l~~~~d 125 (226)
T PRK05785 109 KSFDVVMSSFALHASDN 125 (226)
T ss_pred CCEEEEEecChhhccCC
Confidence 99999999999999654
No 41
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=98.60 E-value=1.6e-06 Score=83.82 Aligned_cols=154 Identities=8% Similarity=0.113 Sum_probs=92.0
Q ss_pred CcceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCCC--cccccccCcccccC
Q 018250 56 SYTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPPR--KYYAAGVPGSFHGR 133 (359)
Q Consensus 56 ~~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~--~~~~~~vpgsfy~~ 133 (359)
.+..+|+|+|||+|..++.++ ++ .|+.+++.-|+|. .-...-+.+... .--+..++|+|++.
T Consensus 148 ~~~~~vlDiG~G~G~~~~~~~--------~~-------~p~~~~~~~D~~~-~~~~a~~~~~~~gl~~rv~~~~~d~~~~ 211 (306)
T TIGR02716 148 DGVKKMIDVGGGIGDISAAML--------KH-------FPELDSTILNLPG-AIDLVNENAAEKGVADRMRGIAVDIYKE 211 (306)
T ss_pred CCCCEEEEeCCchhHHHHHHH--------HH-------CCCCEEEEEecHH-HHHHHHHHHHhCCccceEEEEecCccCC
Confidence 345799999999999888774 33 3567888889973 332222222210 00134456799876
Q ss_pred CCCCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceeEEE
Q 018250 134 LFPKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLMVFS 213 (359)
Q Consensus 134 l~p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lvl~ 213 (359)
.+|+ .|+++.+..+|-... .+-..+|+.-++.|+|||++++.
T Consensus 212 ~~~~--~D~v~~~~~lh~~~~------------------------------------~~~~~il~~~~~~L~pgG~l~i~ 253 (306)
T TIGR02716 212 SYPE--ADAVLFCRILYSANE------------------------------------QLSTIMCKKAFDAMRSGGRLLIL 253 (306)
T ss_pred CCCC--CCEEEeEhhhhcCCh------------------------------------HHHHHHHHHHHHhcCCCCEEEEE
Confidence 6775 499998888884221 12234677788999999999887
Q ss_pred eccCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCChhhhccCCccccCCCHHHHHHHHHhCCceeEeE
Q 018250 214 LITGPSGIPFADTVQGATYNFLGSCLWDLAKMGVISEEKARTFNVPAYFPYVEELESLIQRNGHFAMER 282 (359)
Q Consensus 214 ~~g~~~~~~~~~~~~~~~~~~l~~al~~lv~eGli~~e~~d~f~~P~y~ps~~E~~~~i~~~G~F~i~~ 282 (359)
=.-.++... ..+..+...+. .-|+.. .+..+++.+|+.+++++.| |+..+
T Consensus 254 d~~~~~~~~-------~~~~~~~~~~~---~~~~~~--------~~~~~~~~~e~~~ll~~aG-f~~v~ 303 (306)
T TIGR02716 254 DMVIDDPEN-------PNFDYLSHYIL---GAGMPF--------SVLGFKEQARYKEILESLG-YKDVT 303 (306)
T ss_pred EeccCCCCC-------chhhHHHHHHH---Hccccc--------ccccCCCHHHHHHHHHHcC-CCeeE
Confidence 543322110 01122222211 112110 1124566899999999999 97543
No 42
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=98.59 E-value=5.8e-08 Score=77.64 Aligned_cols=95 Identities=21% Similarity=0.240 Sum_probs=51.3
Q ss_pred EeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCC----CcccccccCcccccCCCCC
Q 018250 62 ADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPP----RKYYAAGVPGSFHGRLFPK 137 (359)
Q Consensus 62 aDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~----~~~~~~~vpgsfy~~l~p~ 137 (359)
+|+|||+|..+..++ +.+ |..+++..|....+....-+.+.. ..-.+.....+... ..+.
T Consensus 1 LdiGcG~G~~~~~l~--------~~~-------~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 64 (99)
T PF08242_consen 1 LDIGCGTGRLLRALL--------EEL-------PDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFD-YDPP 64 (99)
T ss_dssp -EESTTTS-TTTTHH--------HHC--------EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS----CCC-
T ss_pred CEeCccChHHHHHHH--------HhC-------CCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhh-cccc
Confidence 699999999999885 332 467999999998775322111111 00111211111111 1223
Q ss_pred CceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCcee
Q 018250 138 STLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLM 210 (359)
Q Consensus 138 ~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~l 210 (359)
+++|+|+++.+|||+. |+..+|+.-++-|+|||+|
T Consensus 65 ~~fD~V~~~~vl~~l~--------------------------------------~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 65 ESFDLVVASNVLHHLE--------------------------------------DIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp ---SEEEEE-TTS--S---------------------------------------HHHHHHHHTTT-TSS-EE
T ss_pred cccceehhhhhHhhhh--------------------------------------hHHHHHHHHHHHcCCCCCC
Confidence 7999999999999972 4556888889999999986
No 43
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=98.57 E-value=3.3e-07 Score=74.47 Aligned_cols=103 Identities=20% Similarity=0.306 Sum_probs=67.4
Q ss_pred ceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCC--C--Cc-ccccccCccc-c
Q 018250 58 TVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLP--P--RK-YYAAGVPGSF-H 131 (359)
Q Consensus 58 ~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~--~--~~-~~~~~vpgsf-y 131 (359)
..+|+|+|||+|..++.+++ +. |..+++.-|+........-+... . .+ -|.. +++ +
T Consensus 2 ~~~vLDlGcG~G~~~~~l~~--------~~-------~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~---~d~~~ 63 (112)
T PF12847_consen 2 GGRVLDLGCGTGRLSIALAR--------LF-------PGARVVGVDISPEMLEIARERAAEEGLSDRITFVQ---GDAEF 63 (112)
T ss_dssp TCEEEEETTTTSHHHHHHHH--------HH-------TTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEE---SCCHG
T ss_pred CCEEEEEcCcCCHHHHHHHh--------cC-------CCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEE---Ccccc
Confidence 36899999999999999963 21 34677777776655554444441 1 11 1222 244 2
Q ss_pred cCCCCCCceeEEEecC-cccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCcee
Q 018250 132 GRLFPKSTLHVVNSFN-AMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLM 210 (359)
Q Consensus 132 ~~l~p~~s~d~~~S~~-alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~l 210 (359)
..-+ .+.+|+++++. ++|++-.. .+...+|+.-.+-|+|||+|
T Consensus 64 ~~~~-~~~~D~v~~~~~~~~~~~~~-----------------------------------~~~~~~l~~~~~~L~pgG~l 107 (112)
T PF12847_consen 64 DPDF-LEPFDLVICSGFTLHFLLPL-----------------------------------DERRRVLERIRRLLKPGGRL 107 (112)
T ss_dssp GTTT-SSCEEEEEECSGSGGGCCHH-----------------------------------HHHHHHHHHHHHHEEEEEEE
T ss_pred Cccc-CCCCCEEEECCCccccccch-----------------------------------hHHHHHHHHHHHhcCCCcEE
Confidence 2222 23599999999 77763211 25667888899999999999
Q ss_pred EEEe
Q 018250 211 VFSL 214 (359)
Q Consensus 211 vl~~ 214 (359)
+++.
T Consensus 108 vi~~ 111 (112)
T PF12847_consen 108 VINT 111 (112)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9874
No 44
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=98.54 E-value=6.5e-07 Score=77.41 Aligned_cols=104 Identities=20% Similarity=0.303 Sum_probs=72.5
Q ss_pred cceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHh---CCCC-cccccccCccccc
Q 018250 57 YTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRT---LPPR-KYYAAGVPGSFHG 132 (359)
Q Consensus 57 ~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~---l~~~-~~~~~~vpgsfy~ 132 (359)
+..+|+|+|||+|..+..++. .. .|..+++..|+....-+..-+. ..-. --|.. +++.+
T Consensus 3 ~~~~iLDlGcG~G~~~~~l~~--------~~------~~~~~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~---~d~~~ 65 (152)
T PF13847_consen 3 SNKKILDLGCGTGRLLIQLAK--------EL------NPGAKIIGVDISEEMIEYAKKRAKELGLDNIEFIQ---GDIED 65 (152)
T ss_dssp TTSEEEEET-TTSHHHHHHHH--------HS------TTTSEEEEEESSHHHHHHHHHHHHHTTSTTEEEEE---SBTTC
T ss_pred CCCEEEEecCcCcHHHHHHHH--------hc------CCCCEEEEEECcHHHHHHhhcccccccccccceEE---eehhc
Confidence 468999999999999998852 21 2457899999988665554332 2212 12333 34444
Q ss_pred CC--CCCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCcee
Q 018250 133 RL--FPKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLM 210 (359)
Q Consensus 133 ~l--~p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~l 210 (359)
.- ++ +.+|+++++.++||+. |...+|+.-.+-|++||++
T Consensus 66 l~~~~~-~~~D~I~~~~~l~~~~--------------------------------------~~~~~l~~~~~~lk~~G~~ 106 (152)
T PF13847_consen 66 LPQELE-EKFDIIISNGVLHHFP--------------------------------------DPEKVLKNIIRLLKPGGIL 106 (152)
T ss_dssp GCGCSS-TTEEEEEEESTGGGTS--------------------------------------HHHHHHHHHHHHEEEEEEE
T ss_pred cccccC-CCeeEEEEcCchhhcc--------------------------------------CHHHHHHHHHHHcCCCcEE
Confidence 11 44 8999999999999954 3445677788999999999
Q ss_pred EEEecc
Q 018250 211 VFSLIT 216 (359)
Q Consensus 211 vl~~~g 216 (359)
++....
T Consensus 107 i~~~~~ 112 (152)
T PF13847_consen 107 IISDPN 112 (152)
T ss_dssp EEEEEE
T ss_pred EEEECC
Confidence 998876
No 45
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=98.53 E-value=9.7e-07 Score=81.03 Aligned_cols=151 Identities=15% Similarity=0.125 Sum_probs=86.2
Q ss_pred cceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCCCcc--cccccCcccccCC
Q 018250 57 YTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPPRKY--YAAGVPGSFHGRL 134 (359)
Q Consensus 57 ~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~--~~~~vpgsfy~~l 134 (359)
...+|+|+|||+|..+..+. +. ...++..|.....-...-+.++...+ -+.-+.+++...
T Consensus 55 ~~~~vLDiGcG~G~~~~~la--------~~---------~~~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~- 116 (219)
T TIGR02021 55 KGKRVLDAGCGTGLLSIELA--------KR---------GAIVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLSL- 116 (219)
T ss_pred CCCEEEEEeCCCCHHHHHHH--------HC---------CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhhC-
Confidence 46799999999999888774 11 24788888877665444443332110 011112344322
Q ss_pred CCCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceeEEEe
Q 018250 135 FPKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLMVFSL 214 (359)
Q Consensus 135 ~p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lvl~~ 214 (359)
| +++|+++|+..+++++. . ++..+++...+-+++|+. +++
T Consensus 117 -~-~~fD~ii~~~~l~~~~~--~----------------------------------~~~~~l~~i~~~~~~~~~--i~~ 156 (219)
T TIGR02021 117 -C-GEFDIVVCMDVLIHYPA--S----------------------------------DMAKALGHLASLTKERVI--FTF 156 (219)
T ss_pred -C-CCcCEEEEhhHHHhCCH--H----------------------------------HHHHHHHHHHHHhCCCEE--EEE
Confidence 3 89999999999877431 1 233345444455554433 344
Q ss_pred ccCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCChhhhccCCccccCCCHHHHHHHHHhCCceeEeEEEEe
Q 018250 215 ITGPSGIPFADTVQGATYNFLGSCLWDLAKMGVISEEKARTFNVPAYFPYVEELESLIQRNGHFAMERMQQL 286 (359)
Q Consensus 215 ~g~~~~~~~~~~~~~~~~~~l~~al~~lv~eGli~~e~~d~f~~P~y~ps~~E~~~~i~~~G~F~i~~le~~ 286 (359)
..... .... ...+.+. . .. .....++++++.+|+.+++++.| |++...+..
T Consensus 157 ~~~~~-----------~~~~-~~~~~~~----~-~~---~~~~~~~~~~~~~~~~~~l~~~G-f~v~~~~~~ 207 (219)
T TIGR02021 157 APKTA-----------WLAF-LKMIGEL----F-PG---SSRATSAYLHPMTDLERALGELG-WKIVREGLV 207 (219)
T ss_pred CCCch-----------HHHH-HHHHHhh----C-cC---cccccceEEecHHHHHHHHHHcC-ceeeeeecc
Confidence 32211 1111 1111111 1 10 11234678899999999999999 999888765
No 46
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=98.53 E-value=6.3e-06 Score=78.61 Aligned_cols=187 Identities=17% Similarity=0.239 Sum_probs=112.5
Q ss_pred cceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCC---C-c--ccccccCccc
Q 018250 57 YTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPP---R-K--YYAAGVPGSF 130 (359)
Q Consensus 57 ~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~---~-~--~~~~~vpgsf 130 (359)
+-.+|||||||-|..++..+ ++| .+.|+..+|..|...-.-+.+.. . + .-.... .+|
T Consensus 72 ~G~~lLDiGCGWG~l~~~aA--------~~y--------~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~-rd~ 134 (283)
T COG2230 72 PGMTLLDIGCGWGGLAIYAA--------EEY--------GVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDY-RDF 134 (283)
T ss_pred CCCEEEEeCCChhHHHHHHH--------HHc--------CCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEeccc-ccc
Confidence 35899999999999999886 333 35777777777665544333221 0 1 111110 011
Q ss_pred ccCCCCCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCcee
Q 018250 131 HGRLFPKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLM 210 (359)
Q Consensus 131 y~~l~p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~l 210 (359)
++.+|=|+|-=+++.+.. +.+..|++.-.+-|+|||+|
T Consensus 135 ------~e~fDrIvSvgmfEhvg~------------------------------------~~~~~ff~~~~~~L~~~G~~ 172 (283)
T COG2230 135 ------EEPFDRIVSVGMFEHVGK------------------------------------ENYDDFFKKVYALLKPGGRM 172 (283)
T ss_pred ------ccccceeeehhhHHHhCc------------------------------------ccHHHHHHHHHhhcCCCceE
Confidence 223888888666666432 35667999999999999999
Q ss_pred EEEeccCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCChhhhccCCcc-ccCCCHHHHHHHHHhCCceeEeEEEEeecC
Q 018250 211 VFSLITGPSGIPFADTVQGATYNFLGSCLWDLAKMGVISEEKARTFNVP-AYFPYVEELESLIQRNGHFAMERMQQLDQP 289 (359)
Q Consensus 211 vl~~~g~~~~~~~~~~~~~~~~~~l~~al~~lv~eGli~~e~~d~f~~P-~y~ps~~E~~~~i~~~G~F~i~~le~~~~~ 289 (359)
++-.++....... .. . .|. +.+.+| -+.||..++...+.+.| |.+...+.+.
T Consensus 173 llh~I~~~~~~~~-~~----~------~~i-------------~~yiFPgG~lPs~~~i~~~~~~~~-~~v~~~~~~~-- 225 (283)
T COG2230 173 LLHSITGPDQEFR-RF----P------DFI-------------DKYIFPGGELPSISEILELASEAG-FVVLDVESLR-- 225 (283)
T ss_pred EEEEecCCCcccc-cc----h------HHH-------------HHhCCCCCcCCCHHHHHHHHHhcC-cEEehHhhhc--
Confidence 9999987763211 00 0 011 112222 26789999999999999 9987666652
Q ss_pred CCCCCCChhHHHHHHHHHhhhhhhhccC---HHHHHHHHHHHHHHHHHHhhh
Q 018250 290 MRHKTFPAQFYLSHLRAVLEGLIGKHFG---EELLENIFNHINTKEAEILSI 338 (359)
Q Consensus 290 ~~~~~~~~~~v~~~iRa~~~~~l~~~~~---e~i~delf~r~~~~~~~~~~~ 338 (359)
..++..++.|.+.+-+ ++. ...-++++..|+..++..-..
T Consensus 226 --------~hYa~Tl~~W~~~f~~-~~~~a~~~~~e~~~r~w~~yl~~~~~~ 268 (283)
T COG2230 226 --------PHYARTLRLWRERFEA-NRDEAIALYDERFYRMWELYLAACAAA 268 (283)
T ss_pred --------HHHHHHHHHHHHHHHH-HHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 3445555555554444 222 224445555666655544444
No 47
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=98.51 E-value=2e-06 Score=78.82 Aligned_cols=158 Identities=17% Similarity=0.216 Sum_probs=89.0
Q ss_pred cceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCCCcc-cccccCcccccCCC
Q 018250 57 YTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPPRKY-YAAGVPGSFHGRLF 135 (359)
Q Consensus 57 ~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~-~~~~vpgsfy~~l~ 135 (359)
...+|+|+|||+|..+..+++ . ...++..|+........-+.+..... -+..+-+++.+.+.
T Consensus 45 ~~~~vLdlG~G~G~~~~~l~~--------~---------~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~ 107 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPLAR--------L---------GANVTGIDASEENIEVAKLHAKKDPLLKIEYRCTSVEDLAE 107 (224)
T ss_pred CCCeEEEECCCCCHHHHHHHh--------c---------CCeEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhc
Confidence 467999999999988876631 1 12477888765443332222211000 01111123333332
Q ss_pred C-CCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceeEEEe
Q 018250 136 P-KSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLMVFSL 214 (359)
Q Consensus 136 p-~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lvl~~ 214 (359)
+ ++++|+++++.++|+..+ ...+|+...+-|+|||.+++..
T Consensus 108 ~~~~~~D~i~~~~~l~~~~~--------------------------------------~~~~l~~~~~~L~~gG~l~i~~ 149 (224)
T TIGR01983 108 KGAKSFDVVTCMEVLEHVPD--------------------------------------PQAFIRACAQLLKPGGILFFST 149 (224)
T ss_pred CCCCCccEEEehhHHHhCCC--------------------------------------HHHHHHHHHHhcCCCcEEEEEe
Confidence 2 479999999999988542 2346777788899999998876
Q ss_pred ccCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCChhhhccCCccccCCCHHHHHHHHHhCCceeEeEEEEe
Q 018250 215 ITGPSGIPFADTVQGATYNFLGSCLWDLAKMGVISEEKARTFNVPAYFPYVEELESLIQRNGHFAMERMQQL 286 (359)
Q Consensus 215 ~g~~~~~~~~~~~~~~~~~~l~~al~~lv~eGli~~e~~d~f~~P~y~ps~~E~~~~i~~~G~F~i~~le~~ 286 (359)
..+... ......+. .++. .+... +.......+.+.+++.+++++.| |+|..+..+
T Consensus 150 ~~~~~~--------~~~~~~~~---~~~~-~~~~~----~~~~~~~~~~~~~~l~~~l~~~G-~~i~~~~~~ 204 (224)
T TIGR01983 150 INRTPK--------SYLLAIVG---AEYI-LRIVP----KGTHDWEKFIKPSELTSWLESAG-LRVKDVKGL 204 (224)
T ss_pred cCCCch--------HHHHHHHh---hhhh-hhcCC----CCcCChhhcCCHHHHHHHHHHcC-CeeeeeeeE
Confidence 543210 00111110 0111 01111 00111123568999999999999 999887754
No 48
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=98.51 E-value=5.1e-07 Score=92.42 Aligned_cols=135 Identities=15% Similarity=0.096 Sum_probs=86.8
Q ss_pred ceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCC--CcccccccCcccc--cC
Q 018250 58 TVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPP--RKYYAAGVPGSFH--GR 133 (359)
Q Consensus 58 ~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~--~~~~~~~vpgsfy--~~ 133 (359)
..+|+|+|||+|.+|..+. +.+ .+++..|+.........+..+. +-.++. +++. ..
T Consensus 38 ~~~vLDlGcG~G~~~~~la--------~~~---------~~v~giD~s~~~l~~a~~~~~~~~~i~~~~---~d~~~~~~ 97 (475)
T PLN02336 38 GKSVLELGAGIGRFTGELA--------KKA---------GQVIALDFIESVIKKNESINGHYKNVKFMC---ADVTSPDL 97 (475)
T ss_pred CCEEEEeCCCcCHHHHHHH--------hhC---------CEEEEEeCCHHHHHHHHHHhccCCceEEEE---eccccccc
Confidence 4589999999999999885 221 2678888776555432211111 112333 2443 23
Q ss_pred CCCCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceeEEE
Q 018250 134 LFPKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLMVFS 213 (359)
Q Consensus 134 l~p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lvl~ 213 (359)
.+|++++|+|+|+.++||++. .++..+|+..++-|+|||+|++.
T Consensus 98 ~~~~~~fD~I~~~~~l~~l~~------------------------------------~~~~~~l~~~~r~Lk~gG~l~~~ 141 (475)
T PLN02336 98 NISDGSVDLIFSNWLLMYLSD------------------------------------KEVENLAERMVKWLKVGGYIFFR 141 (475)
T ss_pred CCCCCCEEEEehhhhHHhCCH------------------------------------HHHHHHHHHHHHhcCCCeEEEEE
Confidence 478899999999999999753 13556888889999999999885
Q ss_pred eccCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCChhhhccCCccccCCCHHHHHHHHHhCCcee
Q 018250 214 LITGPSGIPFADTVQGATYNFLGSCLWDLAKMGVISEEKARTFNVPAYFPYVEELESLIQRNGHFA 279 (359)
Q Consensus 214 ~~g~~~~~~~~~~~~~~~~~~l~~al~~lv~eGli~~e~~d~f~~P~y~ps~~E~~~~i~~~G~F~ 279 (359)
=..-... | .......|..+++..++...+.++| |.
T Consensus 142 d~~~~~~-------------------------~-----~~~~~~~~~~~~~~~~~~~~f~~~~-~~ 176 (475)
T PLN02336 142 ESCFHQS-------------------------G-----DSKRKNNPTHYREPRFYTKVFKECH-TR 176 (475)
T ss_pred eccCCCC-------------------------C-----cccccCCCCeecChHHHHHHHHHhe-ec
Confidence 3211110 0 0001123556677889999998887 53
No 49
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=98.51 E-value=6.5e-07 Score=85.76 Aligned_cols=149 Identities=19% Similarity=0.235 Sum_probs=98.9
Q ss_pred cceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCC-----CcccccccCcccc
Q 018250 57 YTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPP-----RKYYAAGVPGSFH 131 (359)
Q Consensus 57 ~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~-----~~~~~~~vpgsfy 131 (359)
...+|||+||+.|.-+..+. .+- + -.|+.-| |+-.|..-|+.+.. ..+|.. |-..
T Consensus 115 ~gk~VLDIGC~nGY~~frM~--------~~G-------A-~~ViGiD-P~~lf~~QF~~i~~~lg~~~~~~~l--plgv- 174 (315)
T PF08003_consen 115 KGKRVLDIGCNNGYYSFRML--------GRG-------A-KSVIGID-PSPLFYLQFEAIKHFLGQDPPVFEL--PLGV- 174 (315)
T ss_pred CCCEEEEecCCCcHHHHHHh--------hcC-------C-CEEEEEC-CChHHHHHHHHHHHHhCCCccEEEc--Ccch-
Confidence 35799999999999999884 221 1 3567777 44456555555432 223332 2122
Q ss_pred cCCCCCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceeE
Q 018250 132 GRLFPKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLMV 211 (359)
Q Consensus 132 ~~l~p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lv 211 (359)
+.|-+.+++|+|||.-.|=.+.. |- ..|+.-..-|+|||.||
T Consensus 175 E~Lp~~~~FDtVF~MGVLYHrr~-----------------------Pl---------------~~L~~Lk~~L~~gGeLv 216 (315)
T PF08003_consen 175 EDLPNLGAFDTVFSMGVLYHRRS-----------------------PL---------------DHLKQLKDSLRPGGELV 216 (315)
T ss_pred hhccccCCcCEEEEeeehhccCC-----------------------HH---------------HHHHHHHHhhCCCCEEE
Confidence 33333789999999655544332 11 14555678899999999
Q ss_pred EEeccCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCChhhhccCCccccCCCHHHHHHHHHhCCceeEeEEEEe
Q 018250 212 FSLITGPSGIPFADTVQGATYNFLGSCLWDLAKMGVISEEKARTFNVPAYFPYVEELESLIQRNGHFAMERMQQL 286 (359)
Q Consensus 212 l~~~g~~~~~~~~~~~~~~~~~~l~~al~~lv~eGli~~e~~d~f~~P~y~ps~~E~~~~i~~~G~F~i~~le~~ 286 (359)
+.++..+.... .-+++++.+..++.-|+.||..-+..+++++| |+-.++-..
T Consensus 217 LETlvi~g~~~----------------------~~L~P~~rYa~m~nv~FiPs~~~L~~wl~r~g-F~~v~~v~~ 268 (315)
T PF08003_consen 217 LETLVIDGDEN----------------------TVLVPEDRYAKMRNVWFIPSVAALKNWLERAG-FKDVRCVDV 268 (315)
T ss_pred EEEeeecCCCc----------------------eEEccCCcccCCCceEEeCCHHHHHHHHHHcC-CceEEEecC
Confidence 99986553211 12456667788999999999999999999999 976555443
No 50
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=98.50 E-value=1.8e-07 Score=85.24 Aligned_cols=138 Identities=15% Similarity=0.167 Sum_probs=86.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCcceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCC
Q 018250 25 QFQRGTVDAAKELVREAIVNKLDVGSYGYDNSYTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDH 104 (359)
Q Consensus 25 ~~Q~~~~~~~~~~l~~ai~~~~~~~~~~~~~~~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDL 104 (359)
.+|+.+.....|.+-........+ + .....+|+|+|||+|..+..++ +. .|..+++..|.
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~--~---~~~~~~VLDiGcGtG~~~~~la--------~~-------~p~~~v~gVD~ 72 (202)
T PRK00121 13 KGQQRAIEELWPRLSPAPLDWAEL--F---GNDAPIHLEIGFGKGEFLVEMA--------KA-------NPDINFIGIEV 72 (202)
T ss_pred cchhhhhcccchhhcCCCCCHHHH--c---CCCCCeEEEEccCCCHHHHHHH--------HH-------CCCccEEEEEe
Confidence 455666656666653322111111 1 2346799999999999999884 22 24468999999
Q ss_pred CCCchHHHHHhCCC---Cc-ccccccCccc-c--cCCCCCCceeEEEecCcccccCCCCcccccccccccCCCceeecCC
Q 018250 105 TENDFNTLFRTLPP---RK-YYAAGVPGSF-H--GRLFPKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRF 177 (359)
Q Consensus 105 p~NDFn~lf~~l~~---~~-~~~~~vpgsf-y--~~l~p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~ 177 (359)
.......+-+.... .+ .++. +++ . .+.++++++|.++++++.+|...... ..
T Consensus 73 s~~~i~~a~~~~~~~~~~~v~~~~---~d~~~~l~~~~~~~~~D~V~~~~~~p~~~~~~~-~~----------------- 131 (202)
T PRK00121 73 HEPGVGKALKKIEEEGLTNLRLLC---GDAVEVLLDMFPDGSLDRIYLNFPDPWPKKRHH-KR----------------- 131 (202)
T ss_pred chHHHHHHHHHHHHcCCCCEEEEe---cCHHHHHHHHcCccccceEEEECCCCCCCcccc-cc-----------------
Confidence 88766655544321 11 1233 344 2 34478899999999998888553110 00
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhhccCceeEEEec
Q 018250 178 MKGVHETFQAQFRSDFESILNARAEELVPGGLMVFSLI 215 (359)
Q Consensus 178 ~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lvl~~~ 215 (359)
..+...||+.-++-|+|||++++...
T Consensus 132 ------------~~~~~~~l~~i~~~LkpgG~l~i~~~ 157 (202)
T PRK00121 132 ------------RLVQPEFLALYARKLKPGGEIHFATD 157 (202)
T ss_pred ------------ccCCHHHHHHHHHHcCCCCEEEEEcC
Confidence 00234578888999999999998763
No 51
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=98.49 E-value=8.4e-07 Score=84.29 Aligned_cols=116 Identities=18% Similarity=0.309 Sum_probs=73.0
Q ss_pred CcceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCC---------C---Ccccc
Q 018250 56 SYTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLP---------P---RKYYA 123 (359)
Q Consensus 56 ~~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~---------~---~~~~~ 123 (359)
..+++|+|+|||||.-+-.++-.+ .+.++.. ..+.++++..|+...+-...-+... . .+||.
T Consensus 98 ~~~~ri~d~GCgtGee~YslA~~l----~e~~~~~--~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~ 171 (264)
T smart00138 98 GRRVRIWSAGCSTGEEPYSLAMLL----AETLPKA--REPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFS 171 (264)
T ss_pred CCCEEEEeccccCChHHHHHHHHH----HHHhhhc--CCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEE
Confidence 346999999999997533332111 2322211 1346899999999877655444332 1 23442
Q ss_pred cc----------------cCcccccCCCCCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHH
Q 018250 124 AG----------------VPGSFHGRLFPKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQA 187 (359)
Q Consensus 124 ~~----------------vpgsfy~~l~p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~ 187 (359)
.. ..++..+..+|.+++|+|+|..+|||++.
T Consensus 172 ~~~~~~~v~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crnvl~yf~~--------------------------------- 218 (264)
T smart00138 172 RVEDKYRVKPELKERVRFAKHNLLAESPPLGDFDLIFCRNVLIYFDE--------------------------------- 218 (264)
T ss_pred eCCCeEEEChHHhCcCEEeeccCCCCCCccCCCCEEEechhHHhCCH---------------------------------
Confidence 21 01233343457899999999999999752
Q ss_pred HHHHHHHHHHHHHHHhhccCceeEEE
Q 018250 188 QFRSDFESILNARAEELVPGGLMVFS 213 (359)
Q Consensus 188 Q~~~D~~~fL~~Ra~EL~pGG~lvl~ 213 (359)
.+...+|+.-++-|+|||.|++.
T Consensus 219 ---~~~~~~l~~l~~~L~pGG~L~lg 241 (264)
T smart00138 219 ---PTQRKLLNRFAEALKPGGYLFLG 241 (264)
T ss_pred ---HHHHHHHHHHHHHhCCCeEEEEE
Confidence 13345677788999999998863
No 52
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=98.46 E-value=5.2e-06 Score=76.90 Aligned_cols=102 Identities=18% Similarity=0.236 Sum_probs=68.9
Q ss_pred eEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCCCcccccccCccc-----ccC
Q 018250 59 VRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPPRKYYAAGVPGSF-----HGR 133 (359)
Q Consensus 59 ~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~~~~~vpgsf-----y~~ 133 (359)
..+.|+|||+|..++.++ +.+ -+|+..|+.+-+.+-+- ..++..|. -+|-+| ...
T Consensus 35 ~~a~DvG~G~Gqa~~~ia--------e~~---------k~VIatD~s~~mL~~a~-k~~~~~y~--~t~~~ms~~~~v~L 94 (261)
T KOG3010|consen 35 RLAWDVGTGNGQAARGIA--------EHY---------KEVIATDVSEAMLKVAK-KHPPVTYC--HTPSTMSSDEMVDL 94 (261)
T ss_pred ceEEEeccCCCcchHHHH--------Hhh---------hhheeecCCHHHHHHhh-cCCCcccc--cCCccccccccccc
Confidence 388999999996655553 333 27889999887765322 22222221 112222 233
Q ss_pred CCCCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceeEEE
Q 018250 134 LFPKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLMVFS 213 (359)
Q Consensus 134 l~p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lvl~ 213 (359)
+=+++|+|+|.+.-|+||+ |+.+|++.-.+.|++.|.+++.
T Consensus 95 ~g~e~SVDlI~~Aqa~HWF---------------------------------------dle~fy~~~~rvLRk~Gg~iav 135 (261)
T KOG3010|consen 95 LGGEESVDLITAAQAVHWF---------------------------------------DLERFYKEAYRVLRKDGGLIAV 135 (261)
T ss_pred cCCCcceeeehhhhhHHhh---------------------------------------chHHHHHHHHHHcCCCCCEEEE
Confidence 3469999999999999994 6778999999999998866666
Q ss_pred eccCCC
Q 018250 214 LITGPS 219 (359)
Q Consensus 214 ~~g~~~ 219 (359)
..=+++
T Consensus 136 W~Y~dd 141 (261)
T KOG3010|consen 136 WNYNDD 141 (261)
T ss_pred EEccCC
Confidence 655544
No 53
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=98.45 E-value=1.1e-06 Score=79.22 Aligned_cols=150 Identities=15% Similarity=0.147 Sum_probs=84.7
Q ss_pred ceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCCCcccccccCcccccC--CC
Q 018250 58 TVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPPRKYYAAGVPGSFHGR--LF 135 (359)
Q Consensus 58 ~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~~~~~vpgsfy~~--l~ 135 (359)
..+|+|+|||+|..+..+. +. ...+++.-|+........-+ ..-.++ .+++... .+
T Consensus 14 ~~~iLDiGcG~G~~~~~l~--------~~--------~~~~~~giD~s~~~i~~a~~---~~~~~~---~~d~~~~l~~~ 71 (194)
T TIGR02081 14 GSRVLDLGCGDGELLALLR--------DE--------KQVRGYGIEIDQDGVLACVA---RGVNVI---QGDLDEGLEAF 71 (194)
T ss_pred CCEEEEeCCCCCHHHHHHH--------hc--------cCCcEEEEeCCHHHHHHHHH---cCCeEE---EEEhhhccccc
Confidence 3589999999999876653 11 12355666775533322211 011122 2344432 26
Q ss_pred CCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceeEEEec
Q 018250 136 PKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLMVFSLI 215 (359)
Q Consensus 136 p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lvl~~~ 215 (359)
+++++|+++|+.++||+.+.. .+|+ +-++++|..+++++
T Consensus 72 ~~~sfD~Vi~~~~l~~~~d~~--------------------------------------~~l~---e~~r~~~~~ii~~p 110 (194)
T TIGR02081 72 PDKSFDYVILSQTLQATRNPE--------------------------------------EILD---EMLRVGRHAIVSFP 110 (194)
T ss_pred CCCCcCEEEEhhHhHcCcCHH--------------------------------------HHHH---HHHHhCCeEEEEcC
Confidence 789999999999999975311 1232 22346777777764
Q ss_pred cCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCChhh-h--ccCC-ccccCCCHHHHHHHHHhCCceeEeEEEEee
Q 018250 216 TGPSGIPFADTVQGATYNFLGSCLWDLAKMGVISEEK-A--RTFN-VPAYFPYVEELESLIQRNGHFAMERMQQLD 287 (359)
Q Consensus 216 g~~~~~~~~~~~~~~~~~~l~~al~~lv~eGli~~e~-~--d~f~-~P~y~ps~~E~~~~i~~~G~F~i~~le~~~ 287 (359)
.... +.. .+. +...|.....+ . .-++ .+..+++.+|+.+.+++.| |++.....+.
T Consensus 111 ~~~~------------~~~---~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ll~~~G-f~v~~~~~~~ 169 (194)
T TIGR02081 111 NFGY------------WRV---RWS-ILTKGRMPVTGELPYDWYNTPNIHFCTIADFEDLCGELN-LRILDRAAFD 169 (194)
T ss_pred ChhH------------HHH---HHH-HHhCCccccCCCCCccccCCCCcccCcHHHHHHHHHHCC-CEEEEEEEec
Confidence 3221 111 111 11122221111 0 1112 2346889999999999999 9999888874
No 54
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=98.40 E-value=1.6e-05 Score=73.05 Aligned_cols=73 Identities=16% Similarity=0.223 Sum_probs=45.3
Q ss_pred cceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCC----Cc-ccccccCcccc
Q 018250 57 YTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPP----RK-YYAAGVPGSFH 131 (359)
Q Consensus 57 ~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~----~~-~~~~~vpgsfy 131 (359)
...+|+|+|||+|..+..++ +. ..+++..|+..+.-...-+.... .. -|.. +++
T Consensus 63 ~~~~vLDvGcG~G~~~~~l~--------~~---------~~~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~---~d~- 121 (230)
T PRK07580 63 TGLRILDAGCGVGSLSIPLA--------RR---------GAKVVASDISPQMVEEARERAPEAGLAGNITFEV---GDL- 121 (230)
T ss_pred CCCEEEEEeCCCCHHHHHHH--------Hc---------CCEEEEEECCHHHHHHHHHHHHhcCCccCcEEEE---cCc-
Confidence 35799999999999888774 11 12588888876554433332221 11 1222 121
Q ss_pred cCCCCCCceeEEEecCccccc
Q 018250 132 GRLFPKSTLHVVNSFNAMHWL 152 (359)
Q Consensus 132 ~~l~p~~s~d~~~S~~alHWL 152 (359)
-.+++++|+++++.++|+.
T Consensus 122 --~~~~~~fD~v~~~~~l~~~ 140 (230)
T PRK07580 122 --ESLLGRFDTVVCLDVLIHY 140 (230)
T ss_pred --hhccCCcCEEEEcchhhcC
Confidence 1346889999999999653
No 55
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=98.38 E-value=1.5e-07 Score=75.76 Aligned_cols=97 Identities=24% Similarity=0.347 Sum_probs=63.9
Q ss_pred EEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCC---CcccccccCcccccCCCCC
Q 018250 61 IADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPP---RKYYAAGVPGSFHGRLFPK 137 (359)
Q Consensus 61 IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~---~~~~~~~vpgsfy~~l~p~ 137 (359)
|+|+|||+|..+..+. +.++ ..|+.+++..|+..++....-+.... +--|+. +++-+-.+++
T Consensus 1 ILDlgcG~G~~~~~l~--------~~~~----~~~~~~~~gvD~s~~~l~~~~~~~~~~~~~~~~~~---~D~~~l~~~~ 65 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALA--------RRFD----AGPSSRVIGVDISPEMLELAKKRFSEDGPKVRFVQ---ADARDLPFSD 65 (101)
T ss_dssp -EEET-TTSHHHHHHH--------HHS---------SEEEEEES-HHHHHHHHHHSHHTTTTSEEEE---SCTTCHHHHS
T ss_pred CEEeecCCcHHHHHHH--------HHhh----hcccceEEEEECCHHHHHHHHHhchhcCCceEEEE---CCHhHCcccC
Confidence 7999999999999885 3331 12457999999998776655444421 112333 3443333678
Q ss_pred CceeEEEecCc-ccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCc
Q 018250 138 STLHVVNSFNA-MHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGG 208 (359)
Q Consensus 138 ~s~d~~~S~~a-lHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG 208 (359)
+++|+++++.+ +|++++ +++..+|+.-++-|+|||
T Consensus 66 ~~~D~v~~~~~~~~~~~~------------------------------------~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 66 GKFDLVVCSGLSLHHLSP------------------------------------EELEALLRRIARLLRPGG 101 (101)
T ss_dssp SSEEEEEE-TTGGGGSSH------------------------------------HHHHHHHHHHHHTEEEEE
T ss_pred CCeeEEEEcCCccCCCCH------------------------------------HHHHHHHHHHHHHhCCCC
Confidence 89999999766 998653 366778999999999998
No 56
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=98.37 E-value=3.7e-06 Score=74.82 Aligned_cols=123 Identities=12% Similarity=0.017 Sum_probs=71.0
Q ss_pred ceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCCCcccccccCcccccCCCCC
Q 018250 58 TVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPPRKYYAAGVPGSFHGRLFPK 137 (359)
Q Consensus 58 ~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~~~~~vpgsfy~~l~p~ 137 (359)
..+|+|+|||+|..++.++ +. .+ +++..|+....-..+-+.+....+-+..+.+++++.+ .
T Consensus 20 ~~~vLdlG~G~G~~~~~l~--------~~-------~~--~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~--~ 80 (179)
T TIGR00537 20 PDDVLEIGAGTGLVAIRLK--------GK-------GK--CILTTDINPFAVKELRENAKLNNVGLDVVMTDLFKGV--R 80 (179)
T ss_pred CCeEEEeCCChhHHHHHHH--------hc-------CC--EEEEEECCHHHHHHHHHHHHHcCCceEEEEccccccc--C
Confidence 3579999999999888774 21 12 7889998775544443332211111222234555533 4
Q ss_pred CceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceeEEEecc
Q 018250 138 STLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLMVFSLIT 216 (359)
Q Consensus 138 ~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lvl~~~g 216 (359)
+++|+++|+..+|.....+.. .+....++..| . .-...+..||+.-.+-|+|||++++...+
T Consensus 81 ~~fD~Vi~n~p~~~~~~~~~~-~~~~~~~~~~~-------~---------~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~ 142 (179)
T TIGR00537 81 GKFDVILFNPPYLPLEDDLRR-GDWLDVAIDGG-------K---------DGRKVIDRFLDELPEILKEGGRVQLIQSS 142 (179)
T ss_pred CcccEEEECCCCCCCcchhcc-cchhhhhhhcC-------C---------chHHHHHHHHHhHHHhhCCCCEEEEEEec
Confidence 599999999888765432210 00000011000 0 00122456888888999999999887743
No 57
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=98.37 E-value=3.5e-06 Score=78.02 Aligned_cols=196 Identities=18% Similarity=0.204 Sum_probs=116.3
Q ss_pred chHHhhHHHHHHHHH--------HHHHHHHHHHhhhccCCCCCCCCcceEEEeecCCCCcccHHHHHHHHHHHHHHhhcC
Q 018250 19 SYAHNSQFQRGTVDA--------AKELVREAIVNKLDVGSYGYDNSYTVRIADLGCSVGPNTFISVQNIIEALEFKFQNL 90 (359)
Q Consensus 19 sY~~nS~~Q~~~~~~--------~~~~l~~ai~~~~~~~~~~~~~~~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~ 90 (359)
-|..++..+....-. -..||.....+.++.. ...+.+|+++|||.|....-++ +..
T Consensus 30 ~y~~~~~k~wD~fy~~~~~rFfkdR~wL~~Efpel~~~~-----~~~~~~ilEvGCGvGNtvfPll--------~~~--- 93 (264)
T KOG2361|consen 30 KYEREASKYWDTFYKIHENRFFKDRNWLLREFPELLPVD-----EKSAETILEVGCGVGNTVFPLL--------KTS--- 93 (264)
T ss_pred hhhcchhhhhhhhhhhccccccchhHHHHHhhHHhhCcc-----ccChhhheeeccCCCcccchhh--------hcC---
Confidence 355555555444322 2455655555544332 2234599999999998777664 221
Q ss_pred CCCCCCceEEecCCCCCchHHHHHhCCC--Cc--ccccccCcccccCCCCCCceeEEEecCcccccCCCCcccccccccc
Q 018250 91 SLPVPDFQVFFNDHTENDFNTLFRTLPP--RK--YYAAGVPGSFHGRLFPKSTLHVVNSFNAMHWLSKTPKVNMLEKSLE 166 (359)
Q Consensus 91 ~~~~p~~~v~~nDLp~NDFn~lf~~l~~--~~--~~~~~vpgsfy~~l~p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~ 166 (359)
+.|.+.+|+.|...+--.-+=++-.- .+ .|+.-+-++=....++.+|+|++..-+.| |-+|+.
T Consensus 94 --~n~~l~v~acDfsp~Ai~~vk~~~~~~e~~~~afv~Dlt~~~~~~~~~~~svD~it~IFvL---SAi~pe-------- 160 (264)
T KOG2361|consen 94 --PNNRLKVYACDFSPRAIELVKKSSGYDESRVEAFVWDLTSPSLKEPPEEGSVDIITLIFVL---SAIHPE-------- 160 (264)
T ss_pred --CCCCeEEEEcCCChHHHHHHHhccccchhhhcccceeccchhccCCCCcCccceEEEEEEE---eccChH--------
Confidence 35569999999998654433222111 11 24444433334555778888888775553 334432
Q ss_pred cCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceeEEEeccCCCCCCCCCcchhHHHHHHHHHHHHHHHcC
Q 018250 167 WNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLMVFSLITGPSGIPFADTVQGATYNFLGSCLWDLAKMG 246 (359)
Q Consensus 167 ~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lvl~~~g~~~~~~~~~~~~~~~~~~l~~al~~lv~eG 246 (359)
-+..-++.-.+-|||||.+++-=.|+.+.. .+ +-. .+-
T Consensus 161 -------------------------k~~~a~~nl~~llKPGG~llfrDYg~~Dla------------ql----RF~-~~~ 198 (264)
T KOG2361|consen 161 -------------------------KMQSVIKNLRTLLKPGGSLLFRDYGRYDLA------------QL----RFK-KGQ 198 (264)
T ss_pred -------------------------HHHHHHHHHHHHhCCCcEEEEeecccchHH------------HH----hcc-CCc
Confidence 123345556788999999999888887621 00 100 222
Q ss_pred CCChhhh-ccCCccccCCCHHHHHHHHHhCCceeEeEEEEe
Q 018250 247 VISEEKA-RTFNVPAYFPYVEELESLIQRNGHFAMERMQQL 286 (359)
Q Consensus 247 li~~e~~-d~f~~P~y~ps~~E~~~~i~~~G~F~i~~le~~ 286 (359)
.|++..+ .+=-.+.||.+.+|+++++.++| |..++++.-
T Consensus 199 ~i~~nfYVRgDGT~~YfF~~eeL~~~f~~ag-f~~~~~~~~ 238 (264)
T KOG2361|consen 199 CISENFYVRGDGTRAYFFTEEELDELFTKAG-FEEVQLEVD 238 (264)
T ss_pred eeecceEEccCCceeeeccHHHHHHHHHhcc-cchhcccce
Confidence 2332222 12234679999999999999999 987777664
No 58
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=98.37 E-value=1.2e-06 Score=78.73 Aligned_cols=128 Identities=13% Similarity=0.154 Sum_probs=76.3
Q ss_pred ceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCC---CcccccccCcccccCC
Q 018250 58 TVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPP---RKYYAAGVPGSFHGRL 134 (359)
Q Consensus 58 ~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~---~~~~~~~vpgsfy~~l 134 (359)
..+|+|+|||+|..|+.+. .. .|..+|+.-|...++-.-+-+.... .. +.-+.++..+ +
T Consensus 43 ~~~vLDiGcGtG~~s~~la--------~~-------~~~~~V~~iD~s~~~~~~a~~~~~~~~~~~--i~~i~~d~~~-~ 104 (181)
T TIGR00138 43 GKKVIDIGSGAGFPGIPLA--------IA-------RPELKLTLLESNHKKVAFLREVKAELGLNN--VEIVNGRAED-F 104 (181)
T ss_pred CCeEEEecCCCCccHHHHH--------HH-------CCCCeEEEEeCcHHHHHHHHHHHHHhCCCC--eEEEecchhh-c
Confidence 5789999999999999873 22 2346899999987654333222111 12 1222345533 3
Q ss_pred CCCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceeEEEe
Q 018250 135 FPKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLMVFSL 214 (359)
Q Consensus 135 ~p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lvl~~ 214 (359)
.+++++|+|+|.. +|++ ..+++.-.+-|+|||++++..
T Consensus 105 ~~~~~fD~I~s~~-~~~~-----------------------------------------~~~~~~~~~~LkpgG~lvi~~ 142 (181)
T TIGR00138 105 QHEEQFDVITSRA-LASL-----------------------------------------NVLLELTLNLLKVGGYFLAYK 142 (181)
T ss_pred cccCCccEEEehh-hhCH-----------------------------------------HHHHHHHHHhcCCCCEEEEEc
Confidence 4578999999865 3331 124444467799999999874
Q ss_pred ccCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCChhhhccCCcc
Q 018250 215 ITGPSGIPFADTVQGATYNFLGSCLWDLAKMGVISEEKARTFNVP 259 (359)
Q Consensus 215 ~g~~~~~~~~~~~~~~~~~~l~~al~~lv~eGli~~e~~d~f~~P 259 (359)
|... ...+....+.+..+|+- .-+.+++..|
T Consensus 143 -~~~~------------~~~~~~~~e~~~~~~~~-~~~~~~~~~~ 173 (181)
T TIGR00138 143 -GKKY------------LDEIEEAKRKCQVLGVE-PLEVPPLTGP 173 (181)
T ss_pred -CCCc------------HHHHHHHHHhhhhcCce-EeeccccCCC
Confidence 2221 13344444566666753 3344566666
No 59
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=98.36 E-value=2.9e-06 Score=78.46 Aligned_cols=155 Identities=17% Similarity=0.182 Sum_probs=89.8
Q ss_pred cceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCC---CcccccccCcccccC
Q 018250 57 YTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPP---RKYYAAGVPGSFHGR 133 (359)
Q Consensus 57 ~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~---~~~~~~~vpgsfy~~ 133 (359)
...+|+|+|||+|..+..+. +. ..+++..|+..+.....-+.... ..-+.. +++-..
T Consensus 48 ~~~~vLdiG~G~G~~~~~l~--------~~---------~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~---~~~~~~ 107 (233)
T PRK05134 48 FGKRVLDVGCGGGILSESMA--------RL---------GADVTGIDASEENIEVARLHALESGLKIDYRQ---TTAEEL 107 (233)
T ss_pred CCCeEEEeCCCCCHHHHHHH--------Hc---------CCeEEEEcCCHHHHHHHHHHHHHcCCceEEEe---cCHHHh
Confidence 35789999999999876653 11 13678888876554332222111 111111 222222
Q ss_pred C-CCCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceeEE
Q 018250 134 L-FPKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLMVF 212 (359)
Q Consensus 134 l-~p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lvl 212 (359)
+ .+++.+|+++++..+++... ...+|+...+-|+|||++++
T Consensus 108 ~~~~~~~fD~Ii~~~~l~~~~~--------------------------------------~~~~l~~~~~~L~~gG~l~v 149 (233)
T PRK05134 108 AAEHPGQFDVVTCMEMLEHVPD--------------------------------------PASFVRACAKLVKPGGLVFF 149 (233)
T ss_pred hhhcCCCccEEEEhhHhhccCC--------------------------------------HHHHHHHHHHHcCCCcEEEE
Confidence 2 35689999999988888432 22367777888999999998
Q ss_pred EeccCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCChhhhccCCccccCCCHHHHHHHHHhCCceeEeEEEEe
Q 018250 213 SLITGPSGIPFADTVQGATYNFLGSCLWDLAKMGVISEEKARTFNVPAYFPYVEELESLIQRNGHFAMERMQQL 286 (359)
Q Consensus 213 ~~~g~~~~~~~~~~~~~~~~~~l~~al~~lv~eGli~~e~~d~f~~P~y~ps~~E~~~~i~~~G~F~i~~le~~ 286 (359)
+..++... ........ .+.+..++ .. .......+++.+|+.+++++.| |++.+....
T Consensus 150 ~~~~~~~~--------~~~~~~~~---~~~~~~~~-~~----~~~~~~~~~~~~~~~~~l~~~G-f~~v~~~~~ 206 (233)
T PRK05134 150 STLNRNLK--------SYLLAIVG---AEYVLRML-PK----GTHDYKKFIKPSELAAWLRQAG-LEVQDITGL 206 (233)
T ss_pred EecCCChH--------HHHHHHhh---HHHHhhhc-Cc----ccCchhhcCCHHHHHHHHHHCC-CeEeeeeeE
Confidence 87653321 00111111 11111111 10 0111235678999999999999 998877643
No 60
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=98.36 E-value=1.8e-06 Score=78.22 Aligned_cols=105 Identities=18% Similarity=0.226 Sum_probs=62.6
Q ss_pred cceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCCCcccccccCcccccCCCC
Q 018250 57 YTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPPRKYYAAGVPGSFHGRLFP 136 (359)
Q Consensus 57 ~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~~~~~vpgsfy~~l~p 136 (359)
++.++||+|||.|+||+-+++. .+.|..-|....-...+.+.......=+...-.++.+.-+|
T Consensus 30 ~~g~~LDlgcG~GRNalyLA~~-----------------G~~VtAvD~s~~al~~l~~~a~~~~l~i~~~~~Dl~~~~~~ 92 (192)
T PF03848_consen 30 KPGKALDLGCGEGRNALYLASQ-----------------GFDVTAVDISPVALEKLQRLAEEEGLDIRTRVADLNDFDFP 92 (192)
T ss_dssp -SSEEEEES-TTSHHHHHHHHT-----------------T-EEEEEESSHHHHHHHHHHHHHTT-TEEEEE-BGCCBS-T
T ss_pred CCCcEEEcCCCCcHHHHHHHHC-----------------CCeEEEEECCHHHHHHHHHHHhhcCceeEEEEecchhcccc
Confidence 3579999999999999999632 35666666655444433222111110011111122222334
Q ss_pred CCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceeEEEec
Q 018250 137 KSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLMVFSLI 215 (359)
Q Consensus 137 ~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lvl~~~ 215 (359)
+.+|+|+|..++|.|.. + .+..+++...+.++|||++++..+
T Consensus 93 -~~yD~I~st~v~~fL~~--~----------------------------------~~~~i~~~m~~~~~pGG~~li~~~ 134 (192)
T PF03848_consen 93 -EEYDFIVSTVVFMFLQR--E----------------------------------LRPQIIENMKAATKPGGYNLIVTF 134 (192)
T ss_dssp -TTEEEEEEESSGGGS-G--G----------------------------------GHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred -CCcCEEEEEEEeccCCH--H----------------------------------HHHHHHHHHHhhcCCcEEEEEEEe
Confidence 68999999999999762 1 233467778899999999888654
No 61
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=98.35 E-value=1.8e-06 Score=83.42 Aligned_cols=112 Identities=13% Similarity=0.156 Sum_probs=77.1
Q ss_pred ceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCC--CcccccccCcccccCC-
Q 018250 58 TVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPP--RKYYAAGVPGSFHGRL- 134 (359)
Q Consensus 58 ~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~--~~~~~~~vpgsfy~~l- 134 (359)
..+|+|+|||+|..|..+++... ...+++.-|+...+-....+.+.. ...-+.++-|+|.+.+
T Consensus 64 ~~~iLELGcGtG~~t~~Ll~~l~--------------~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~ 129 (301)
T TIGR03438 64 GCELVELGSGSSRKTRLLLDALR--------------QPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLA 129 (301)
T ss_pred CCeEEecCCCcchhHHHHHHhhc--------------cCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhh
Confidence 46899999999999998863211 136899999998776555555432 1122344556887533
Q ss_pred CCCC----ceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCcee
Q 018250 135 FPKS----TLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLM 210 (359)
Q Consensus 135 ~p~~----s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~l 210 (359)
+|.. ...++++.+++++++ | .|...||+.-++.|+|||+|
T Consensus 130 ~~~~~~~~~~~~~~~gs~~~~~~--~----------------------------------~e~~~~L~~i~~~L~pgG~~ 173 (301)
T TIGR03438 130 LPPEPAAGRRLGFFPGSTIGNFT--P----------------------------------EEAVAFLRRIRQLLGPGGGL 173 (301)
T ss_pred hhcccccCCeEEEEecccccCCC--H----------------------------------HHHHHHHHHHHHhcCCCCEE
Confidence 4433 456777778888865 2 24556899999999999999
Q ss_pred EEEeccCCC
Q 018250 211 VFSLITGPS 219 (359)
Q Consensus 211 vl~~~g~~~ 219 (359)
++.+-...+
T Consensus 174 lig~d~~~~ 182 (301)
T TIGR03438 174 LIGVDLVKD 182 (301)
T ss_pred EEeccCCCC
Confidence 987765544
No 62
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=98.32 E-value=4.7e-06 Score=76.19 Aligned_cols=77 Identities=17% Similarity=0.180 Sum_probs=55.3
Q ss_pred cceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCCCcccccccCcccccCCCC
Q 018250 57 YTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPPRKYYAAGVPGSFHGRLFP 136 (359)
Q Consensus 57 ~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~~~~~vpgsfy~~l~p 136 (359)
...+|+|+|||+|.++..+. +. .|..+++.-|+..+.....-+.++.-. +. .+++.+ .+|
T Consensus 43 ~~~~VLDiGCG~G~~~~~L~--------~~-------~~~~~v~giDiS~~~l~~A~~~~~~~~-~~---~~d~~~-~~~ 102 (204)
T TIGR03587 43 KIASILELGANIGMNLAALK--------RL-------LPFKHIYGVEINEYAVEKAKAYLPNIN-II---QGSLFD-PFK 102 (204)
T ss_pred CCCcEEEEecCCCHHHHHHH--------Hh-------CCCCeEEEEECCHHHHHHHHhhCCCCc-EE---EeeccC-CCC
Confidence 35689999999999888773 22 234689999998877665544343211 22 345555 789
Q ss_pred CCceeEEEecCcccccC
Q 018250 137 KSTLHVVNSFNAMHWLS 153 (359)
Q Consensus 137 ~~s~d~~~S~~alHWLs 153 (359)
++++|+|+|+.+||+++
T Consensus 103 ~~sfD~V~~~~vL~hl~ 119 (204)
T TIGR03587 103 DNFFDLVLTKGVLIHIN 119 (204)
T ss_pred CCCEEEEEECChhhhCC
Confidence 99999999999998763
No 63
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=98.27 E-value=3e-06 Score=77.71 Aligned_cols=110 Identities=21% Similarity=0.233 Sum_probs=69.1
Q ss_pred ceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCCCcccccccCcccccC----
Q 018250 58 TVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPPRKYYAAGVPGSFHGR---- 133 (359)
Q Consensus 58 ~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~~~~~vpgsfy~~---- 133 (359)
..+|+|+|||+|..|..++ ++. .+.-.|+.-|+.. .+ .++ .-.++ -|++.+.
T Consensus 52 ~~~VLDlG~GtG~~t~~l~--------~~~------~~~~~V~aVDi~~--~~----~~~-~v~~i---~~D~~~~~~~~ 107 (209)
T PRK11188 52 GMTVVDLGAAPGGWSQYAV--------TQI------GDKGRVIACDILP--MD----PIV-GVDFL---QGDFRDELVLK 107 (209)
T ss_pred CCEEEEEcccCCHHHHHHH--------HHc------CCCceEEEEeccc--cc----CCC-CcEEE---ecCCCChHHHH
Confidence 4589999999999888775 332 1234788888854 11 111 11122 2355542
Q ss_pred ----CCCCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCce
Q 018250 134 ----LFPKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGL 209 (359)
Q Consensus 134 ----l~p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~ 209 (359)
.++++++|+++|+.+.||... |. .| . ..+ .......|+.-.+-|+|||+
T Consensus 108 ~i~~~~~~~~~D~V~S~~~~~~~g~-~~--~d-------------------~----~~~-~~~~~~~L~~~~~~LkpGG~ 160 (209)
T PRK11188 108 ALLERVGDSKVQVVMSDMAPNMSGT-PA--VD-------------------I----PRA-MYLVELALDMCRDVLAPGGS 160 (209)
T ss_pred HHHHHhCCCCCCEEecCCCCccCCC-hH--HH-------------------H----HHH-HHHHHHHHHHHHHHcCCCCE
Confidence 267899999999999999431 11 01 0 000 11134678888899999999
Q ss_pred eEEEeccCC
Q 018250 210 MVFSLITGP 218 (359)
Q Consensus 210 lvl~~~g~~ 218 (359)
|++..+..+
T Consensus 161 ~vi~~~~~~ 169 (209)
T PRK11188 161 FVVKVFQGE 169 (209)
T ss_pred EEEEEecCc
Confidence 999776444
No 64
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=98.26 E-value=5.4e-06 Score=77.65 Aligned_cols=148 Identities=21% Similarity=0.262 Sum_probs=92.1
Q ss_pred eEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhC----CC--C--cc---cccccC
Q 018250 59 VRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTL----PP--R--KY---YAAGVP 127 (359)
Q Consensus 59 ~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l----~~--~--~~---~~~~vp 127 (359)
.+|+|+|||+|-.|.-++ ++ .++|..-|+..-+-- ..+.- |. . .| |.....
T Consensus 91 ~~ilDvGCGgGLLSepLA---------rl--------ga~V~GID~s~~~V~-vA~~h~~~dP~~~~~~~y~l~~~~~~~ 152 (282)
T KOG1270|consen 91 MKILDVGCGGGLLSEPLA---------RL--------GAQVTGIDASDDMVE-VANEHKKMDPVLEGAIAYRLEYEDTDV 152 (282)
T ss_pred ceEEEeccCccccchhhH---------hh--------CCeeEeecccHHHHH-HHHHhhhcCchhccccceeeehhhcch
Confidence 679999999999999885 21 257777777652221 22221 11 1 11 322221
Q ss_pred cccccCCCCCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 018250 128 GSFHGRLFPKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPG 207 (359)
Q Consensus 128 gsfy~~l~p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pG 207 (359)
-++ - ..+|.|+|+-.++.. +|...||++..+-|+||
T Consensus 153 E~~----~--~~fDaVvcsevleHV--------------------------------------~dp~~~l~~l~~~lkP~ 188 (282)
T KOG1270|consen 153 EGL----T--GKFDAVVCSEVLEHV--------------------------------------KDPQEFLNCLSALLKPN 188 (282)
T ss_pred hhc----c--cccceeeeHHHHHHH--------------------------------------hCHHHHHHHHHHHhCCC
Confidence 111 1 228999997777763 36677999999999999
Q ss_pred ceeEEEeccCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCChhhhccCCccccCCCHHHHHHHHHhCCceeEeEEEE
Q 018250 208 GLMVFSLITGPSGIPFADTVQGATYNFLGSCLWDLAKMGVISEEKARTFNVPAYFPYVEELESLIQRNGHFAMERMQQ 285 (359)
Q Consensus 208 G~lvl~~~g~~~~~~~~~~~~~~~~~~l~~al~~lv~eGli~~e~~d~f~~P~y~ps~~E~~~~i~~~G~F~i~~le~ 285 (359)
|++++++..|.=.... +.+ .+.+.+...|-.|.-.-+ -|++++|+..+++.++ +.++.+.-
T Consensus 189 G~lfittinrt~lS~~-----~~i--~~~E~vl~ivp~Gth~~e---------kfi~p~e~~~~l~~~~-~~v~~v~G 249 (282)
T KOG1270|consen 189 GRLFITTINRTILSFA-----GTI--FLAEIVLRIVPKGTHTWE---------KFINPEELTSILNANG-AQVNDVVG 249 (282)
T ss_pred CceEeeehhhhHHHhh-----ccc--cHHHHHHHhcCCCCcCHH---------HcCCHHHHHHHHHhcC-cchhhhhc
Confidence 9999999876521100 011 122222335555554333 5789999999999998 87765543
No 65
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=98.22 E-value=1.6e-05 Score=73.28 Aligned_cols=142 Identities=14% Similarity=0.083 Sum_probs=90.4
Q ss_pred ceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCCC---------ccc----cc
Q 018250 58 TVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPPR---------KYY----AA 124 (359)
Q Consensus 58 ~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~---------~~~----~~ 124 (359)
..+|+|+|||.|+|++-++ ++ ..+|+..|+...--..+++...-. ..+ +.
T Consensus 35 ~~rvLd~GCG~G~da~~LA--------~~---------G~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 97 (213)
T TIGR03840 35 GARVFVPLCGKSLDLAWLA--------EQ---------GHRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIE 97 (213)
T ss_pred CCeEEEeCCCchhHHHHHH--------hC---------CCeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceE
Confidence 4699999999999999985 22 368888888876666554422100 000 11
Q ss_pred ccCcccccCCC-CCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018250 125 GVPGSFHGRLF-PKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEE 203 (359)
Q Consensus 125 ~vpgsfy~~l~-p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~E 203 (359)
-+-++|++.-. +...+|.++-..++|= +|+. +...+++.-.+-
T Consensus 98 ~~~~D~~~~~~~~~~~fD~i~D~~~~~~---l~~~---------------------------------~R~~~~~~l~~l 141 (213)
T TIGR03840 98 IFCGDFFALTAADLGPVDAVYDRAALIA---LPEE---------------------------------MRQRYAAHLLAL 141 (213)
T ss_pred EEEccCCCCCcccCCCcCEEEechhhcc---CCHH---------------------------------HHHHHHHHHHHH
Confidence 11235544322 1346888888888773 3331 334567788999
Q ss_pred hccCceeEEEeccCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCChhhhccCCccccCCCHHHHHHHHHhCCceeEeEE
Q 018250 204 LVPGGLMVFSLITGPSGIPFADTVQGATYNFLGSCLWDLAKMGVISEEKARTFNVPAYFPYVEELESLIQRNGHFAMERM 283 (359)
Q Consensus 204 L~pGG~lvl~~~g~~~~~~~~~~~~~~~~~~l~~al~~lv~eGli~~e~~d~f~~P~y~ps~~E~~~~i~~~G~F~i~~l 283 (359)
|+|||++++..+..+... ..-|-|.-+.+|+++.+.. + |+|+.+
T Consensus 142 LkpgG~~ll~~~~~~~~~----------------------------------~~gpp~~~~~~eL~~~f~~-~-~~i~~~ 185 (213)
T TIGR03840 142 LPPGARQLLITLDYDQSE----------------------------------MAGPPFSVSPAEVEALYGG-H-YEIELL 185 (213)
T ss_pred cCCCCeEEEEEEEcCCCC----------------------------------CCCcCCCCCHHHHHHHhcC-C-ceEEEE
Confidence 999998777776543211 0114477899999998863 3 899888
Q ss_pred EEeec
Q 018250 284 QQLDQ 288 (359)
Q Consensus 284 e~~~~ 288 (359)
+....
T Consensus 186 ~~~~~ 190 (213)
T TIGR03840 186 ESRDV 190 (213)
T ss_pred eeccc
Confidence 87643
No 66
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=98.19 E-value=3.3e-06 Score=83.18 Aligned_cols=107 Identities=14% Similarity=0.185 Sum_probs=70.6
Q ss_pred eEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCCCcccccccCcccccCCCCCC
Q 018250 59 VRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPPRKYYAAGVPGSFHGRLFPKS 138 (359)
Q Consensus 59 ~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~~~~~vpgsfy~~l~p~~ 138 (359)
-+|+|+|||+|..++.+. ++ .|..+++..|.........-.++.....-...++++.+.. .++
T Consensus 198 g~VLDlGCG~G~ls~~la--------~~-------~p~~~v~~vDis~~Al~~A~~nl~~n~l~~~~~~~D~~~~--~~~ 260 (342)
T PRK09489 198 GKVLDVGCGAGVLSAVLA--------RH-------SPKIRLTLSDVSAAALESSRATLAANGLEGEVFASNVFSD--IKG 260 (342)
T ss_pred CeEEEeccCcCHHHHHHH--------Hh-------CCCCEEEEEECCHHHHHHHHHHHHHcCCCCEEEEcccccc--cCC
Confidence 489999999999888773 33 3567899999976555444333322111011123344442 367
Q ss_pred ceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceeEEEec
Q 018250 139 TLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLMVFSLI 215 (359)
Q Consensus 139 s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lvl~~~ 215 (359)
.+|+|+|+-.+||.-.. ...+...|++.-++-|+|||.|+++..
T Consensus 261 ~fDlIvsNPPFH~g~~~---------------------------------~~~~~~~~i~~a~~~LkpgG~L~iVan 304 (342)
T PRK09489 261 RFDMIISNPPFHDGIQT---------------------------------SLDAAQTLIRGAVRHLNSGGELRIVAN 304 (342)
T ss_pred CccEEEECCCccCCccc---------------------------------cHHHHHHHHHHHHHhcCcCCEEEEEEe
Confidence 89999999999983211 012456788888999999999988763
No 67
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=98.18 E-value=2.9e-06 Score=76.70 Aligned_cols=111 Identities=17% Similarity=0.161 Sum_probs=72.6
Q ss_pred cceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCC---CcccccccCcccc--
Q 018250 57 YTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPP---RKYYAAGVPGSFH-- 131 (359)
Q Consensus 57 ~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~---~~~~~~~vpgsfy-- 131 (359)
...+|+|+|||+|..+..++ ++ .|+..++..|+........-+.+.. ..+ .-+-++..
T Consensus 16 ~~~~ilDiGcG~G~~~~~la--------~~-------~p~~~v~gvD~~~~~l~~a~~~~~~~~l~ni--~~i~~d~~~~ 78 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMA--------KQ-------NPDKNFLGIEIHTPIVLAANNKANKLGLKNL--HVLCGDANEL 78 (194)
T ss_pred CCceEEEeCCCccHHHHHHH--------Hh-------CCCCCEEEEEeeHHHHHHHHHHHHHhCCCCE--EEEccCHHHH
Confidence 34689999999999998874 22 3567889999877665544443321 111 11223443
Q ss_pred -cCCCCCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCcee
Q 018250 132 -GRLFPKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLM 210 (359)
Q Consensus 132 -~~l~p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~l 210 (359)
..++|++++|.+++++..+|..+.. ... ++ ....||+.-++-|+|||.+
T Consensus 79 ~~~~~~~~~~d~v~~~~pdpw~k~~h-~~~----------r~-------------------~~~~~l~~~~r~LkpgG~l 128 (194)
T TIGR00091 79 LDKFFPDGSLSKVFLNFPDPWPKKRH-NKR----------RI-------------------TQPHFLKEYANVLKKGGVI 128 (194)
T ss_pred HHhhCCCCceeEEEEECCCcCCCCCc-ccc----------cc-------------------CCHHHHHHHHHHhCCCCEE
Confidence 3346788999999999999943210 000 00 0134778889999999999
Q ss_pred EEEe
Q 018250 211 VFSL 214 (359)
Q Consensus 211 vl~~ 214 (359)
++.+
T Consensus 129 ~~~t 132 (194)
T TIGR00091 129 HFKT 132 (194)
T ss_pred EEEe
Confidence 8887
No 68
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=98.16 E-value=1.3e-05 Score=71.78 Aligned_cols=99 Identities=15% Similarity=0.235 Sum_probs=60.5
Q ss_pred cceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCC---CcccccccCcccccC
Q 018250 57 YTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPP---RKYYAAGVPGSFHGR 133 (359)
Q Consensus 57 ~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~---~~~~~~~vpgsfy~~ 133 (359)
...+|+|+|||+|..++.++ ++ .|..+++..|........+-++... ..+ .-+.++.. .
T Consensus 31 ~~~~vLDiG~G~G~~~~~la--------~~-------~~~~~v~~vD~s~~~~~~a~~n~~~~~~~~i--~~~~~d~~-~ 92 (187)
T PRK08287 31 RAKHLIDVGAGTGSVSIEAA--------LQ-------FPSLQVTAIERNPDALRLIKENRQRFGCGNI--DIIPGEAP-I 92 (187)
T ss_pred CCCEEEEECCcCCHHHHHHH--------HH-------CCCCEEEEEECCHHHHHHHHHHHHHhCCCCe--EEEecCch-h
Confidence 34689999999999999884 22 2456899999876544443332211 111 11122321 1
Q ss_pred CCCCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceeEEE
Q 018250 134 LFPKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLMVFS 213 (359)
Q Consensus 134 l~p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lvl~ 213 (359)
.+ ++++|++++..+.+. +..+++...+.|+|||++++.
T Consensus 93 ~~-~~~~D~v~~~~~~~~-----------------------------------------~~~~l~~~~~~Lk~gG~lv~~ 130 (187)
T PRK08287 93 EL-PGKADAIFIGGSGGN-----------------------------------------LTAIIDWSLAHLHPGGRLVLT 130 (187)
T ss_pred hc-CcCCCEEEECCCccC-----------------------------------------HHHHHHHHHHhcCCCeEEEEE
Confidence 22 357888887543221 223566667889999999986
Q ss_pred ec
Q 018250 214 LI 215 (359)
Q Consensus 214 ~~ 215 (359)
..
T Consensus 131 ~~ 132 (187)
T PRK08287 131 FI 132 (187)
T ss_pred Ee
Confidence 64
No 69
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=98.16 E-value=3.7e-05 Score=71.56 Aligned_cols=104 Identities=23% Similarity=0.242 Sum_probs=72.8
Q ss_pred CcceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCCCcccccccCcccccCCC
Q 018250 56 SYTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPPRKYYAAGVPGSFHGRLF 135 (359)
Q Consensus 56 ~~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~~~~~vpgsfy~~l~ 135 (359)
++..+|+|+|+|+|..+..++ ++ .|+++++.-|||.. ....-+ .--+.-+||+|+ .-+
T Consensus 99 ~~~~~vvDvGGG~G~~~~~l~--------~~-------~P~l~~~v~Dlp~v-~~~~~~-----~~rv~~~~gd~f-~~~ 156 (241)
T PF00891_consen 99 SGFKTVVDVGGGSGHFAIALA--------RA-------YPNLRATVFDLPEV-IEQAKE-----ADRVEFVPGDFF-DPL 156 (241)
T ss_dssp TTSSEEEEET-TTSHHHHHHH--------HH-------STTSEEEEEE-HHH-HCCHHH-----TTTEEEEES-TT-TCC
T ss_pred cCccEEEeccCcchHHHHHHH--------HH-------CCCCcceeeccHhh-hhcccc-----ccccccccccHH-hhh
Confidence 345689999999999998884 44 46789999999961 111111 112444679999 778
Q ss_pred CCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccC--ceeEEE
Q 018250 136 PKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPG--GLMVFS 213 (359)
Q Consensus 136 p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pG--G~lvl~ 213 (359)
|. .|+++-...||=.++ .|-..+|+.-++.|+|| |++++.
T Consensus 157 P~--~D~~~l~~vLh~~~d------------------------------------~~~~~iL~~~~~al~pg~~g~llI~ 198 (241)
T PF00891_consen 157 PV--ADVYLLRHVLHDWSD------------------------------------EDCVKILRNAAAALKPGKDGRLLII 198 (241)
T ss_dssp SS--ESEEEEESSGGGS-H------------------------------------HHHHHHHHHHHHHSEECTTEEEEEE
T ss_pred cc--ccceeeehhhhhcch------------------------------------HHHHHHHHHHHHHhCCCCCCeEEEE
Confidence 87 999999999983221 24556899999999999 999888
Q ss_pred eccCCC
Q 018250 214 LITGPS 219 (359)
Q Consensus 214 ~~g~~~ 219 (359)
=.-.++
T Consensus 199 e~~~~~ 204 (241)
T PF00891_consen 199 EMVLPD 204 (241)
T ss_dssp EEEECS
T ss_pred eeccCC
Confidence 765544
No 70
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=98.13 E-value=6.7e-05 Score=73.16 Aligned_cols=72 Identities=14% Similarity=0.156 Sum_probs=47.1
Q ss_pred ceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCC---------CcccccccCc
Q 018250 58 TVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPP---------RKYYAAGVPG 128 (359)
Q Consensus 58 ~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~---------~~~~~~~vpg 128 (359)
..+|+|+|||+|.+++.+. +. ...|+..|+..++....-+.... ...|.. +
T Consensus 145 ~~~VLDlGcGtG~~a~~la--------~~---------g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~---~ 204 (315)
T PLN02585 145 GVTVCDAGCGTGSLAIPLA--------LE---------GAIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEA---N 204 (315)
T ss_pred CCEEEEecCCCCHHHHHHH--------HC---------CCEEEEEECCHHHHHHHHHHHHhcccccccccceEEEE---c
Confidence 4699999999999998884 11 24789999988776544333221 011221 1
Q ss_pred ccccCCCCCCceeEEEecCccccc
Q 018250 129 SFHGRLFPKSTLHVVNSFNAMHWL 152 (359)
Q Consensus 129 sfy~~l~p~~s~d~~~S~~alHWL 152 (359)
++ . ..++++|+|+|+.++|++
T Consensus 205 Dl-~--~l~~~fD~Vv~~~vL~H~ 225 (315)
T PLN02585 205 DL-E--SLSGKYDTVTCLDVLIHY 225 (315)
T ss_pred ch-h--hcCCCcCEEEEcCEEEec
Confidence 22 1 126889999999998763
No 71
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=98.13 E-value=6.8e-06 Score=74.29 Aligned_cols=94 Identities=20% Similarity=0.374 Sum_probs=66.4
Q ss_pred CcceEEEeecCCCCcccHHHHHH------------HHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCCCcccc
Q 018250 56 SYTVRIADLGCSVGPNTFISVQN------------IIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPPRKYYA 123 (359)
Q Consensus 56 ~~~~~IaDlGCs~G~nt~~~~~~------------ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~~~ 123 (359)
+...+++|+|||.|.+|..++.. .|+.-++++. ..|.+++...|+|.
T Consensus 42 ~ry~~alEvGCs~G~lT~~LA~rCd~LlavDis~~Al~~Ar~Rl~----~~~~V~~~~~dvp~----------------- 100 (201)
T PF05401_consen 42 RRYRRALEVGCSIGVLTERLAPRCDRLLAVDISPRALARARERLA----GLPHVEWIQADVPE----------------- 100 (201)
T ss_dssp SSEEEEEEE--TTSHHHHHHGGGEEEEEEEES-HHHHHHHHHHTT----T-SSEEEEES-TTT-----------------
T ss_pred cccceeEecCCCccHHHHHHHHhhCceEEEeCCHHHHHHHHHhcC----CCCCeEEEECcCCC-----------------
Confidence 45688999999999999998643 4555555543 24567777777764
Q ss_pred cccCcccccCCCCCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018250 124 AGVPGSFHGRLFPKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEE 203 (359)
Q Consensus 124 ~~vpgsfy~~l~p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~E 203 (359)
..|++.+|+++.+-.+++|+.. .|+..++..-.+-
T Consensus 101 ----------~~P~~~FDLIV~SEVlYYL~~~-----------------------------------~~L~~~l~~l~~~ 135 (201)
T PF05401_consen 101 ----------FWPEGRFDLIVLSEVLYYLDDA-----------------------------------EDLRAALDRLVAA 135 (201)
T ss_dssp -------------SS-EEEEEEES-GGGSSSH-----------------------------------HHHHHHHHHHHHT
T ss_pred ----------CCCCCCeeEEEEehHhHcCCCH-----------------------------------HHHHHHHHHHHHH
Confidence 2488999999999999998741 2677788888999
Q ss_pred hccCceeEEEec
Q 018250 204 LVPGGLMVFSLI 215 (359)
Q Consensus 204 L~pGG~lvl~~~ 215 (359)
|.|||.||+...
T Consensus 136 L~pgG~LV~g~~ 147 (201)
T PF05401_consen 136 LAPGGHLVFGHA 147 (201)
T ss_dssp EEEEEEEEEEEE
T ss_pred hCCCCEEEEEEe
Confidence 999999999765
No 72
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=98.10 E-value=7.1e-06 Score=81.76 Aligned_cols=107 Identities=14% Similarity=0.065 Sum_probs=68.2
Q ss_pred eEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCC---Cc-ccccccCcccccCC
Q 018250 59 VRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPP---RK-YYAAGVPGSFHGRL 134 (359)
Q Consensus 59 ~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~---~~-~~~~~vpgsfy~~l 134 (359)
.+|+|+|||+|..++.+. ++ .|+.+|++.|...-.....-.++.. .. .-+..+.++.+..+
T Consensus 230 ~~VLDLGCGtGvi~i~la--------~~-------~P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~~~ 294 (378)
T PRK15001 230 GEIVDLGCGNGVIGLTLL--------DK-------NPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSGV 294 (378)
T ss_pred CeEEEEeccccHHHHHHH--------Hh-------CCCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEccccccC
Confidence 589999999999888774 33 3678999999976444333322210 00 00111223444433
Q ss_pred CCCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceeEEEe
Q 018250 135 FPKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLMVFSL 214 (359)
Q Consensus 135 ~p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lvl~~ 214 (359)
++.++|+|+|+-.+|+.-.++.. ....+++.-.+-|+|||.|+++.
T Consensus 295 -~~~~fDlIlsNPPfh~~~~~~~~---------------------------------ia~~l~~~a~~~LkpGG~L~iV~ 340 (378)
T PRK15001 295 -EPFRFNAVLCNPPFHQQHALTDN---------------------------------VAWEMFHHARRCLKINGELYIVA 340 (378)
T ss_pred -CCCCEEEEEECcCcccCccCCHH---------------------------------HHHHHHHHHHHhcccCCEEEEEE
Confidence 56789999999999984322110 11246666678899999999985
No 73
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=98.09 E-value=2e-05 Score=73.24 Aligned_cols=124 Identities=13% Similarity=0.129 Sum_probs=73.1
Q ss_pred ceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCC---CcccccccCcccccCC
Q 018250 58 TVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPP---RKYYAAGVPGSFHGRL 134 (359)
Q Consensus 58 ~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~---~~~~~~~vpgsfy~~l 134 (359)
..+|+|+|||+|..++.++ +. .|..+++..|.........-+.+.. .. +.-+.+++.+ .
T Consensus 88 ~~~ilDig~G~G~~~~~l~--------~~-------~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~--~~~~~~d~~~-~ 149 (251)
T TIGR03534 88 PLRVLDLGTGSGAIALALA--------KE-------RPDARVTAVDISPEALAVARKNAARLGLDN--VTFLQSDWFE-P 149 (251)
T ss_pred CCeEEEEeCcHhHHHHHHH--------HH-------CCCCEEEEEECCHHHHHHHHHHHHHcCCCe--EEEEECchhc-c
Confidence 4689999999999988884 22 2456899999877665544333221 11 1122346654 4
Q ss_pred CCCCceeEEEecCcccccCCCC---cccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceeE
Q 018250 135 FPKSTLHVVNSFNAMHWLSKTP---KVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLMV 211 (359)
Q Consensus 135 ~p~~s~d~~~S~~alHWLs~~p---~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lv 211 (359)
++++++|+++|+--.+..+... ..+... .|...-.-......++..|++.-.+.|+|||+++
T Consensus 150 ~~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~---------------e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~ 214 (251)
T TIGR03534 150 LPGGKFDLIVSNPPYIPEADIHLLDPEVRFH---------------EPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLL 214 (251)
T ss_pred CcCCceeEEEECCCCCchhhhhhcChhhhhc---------------CCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEE
Confidence 6789999999975544322211 111000 0000000011123456788999899999999998
Q ss_pred EEe
Q 018250 212 FSL 214 (359)
Q Consensus 212 l~~ 214 (359)
+..
T Consensus 215 ~~~ 217 (251)
T TIGR03534 215 LEI 217 (251)
T ss_pred EEE
Confidence 865
No 74
>PTZ00146 fibrillarin; Provisional
Probab=98.07 E-value=5.2e-05 Score=72.88 Aligned_cols=73 Identities=11% Similarity=0.054 Sum_probs=41.6
Q ss_pred ceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCc---hHHHHHhCCCCcccccccCcccccC-
Q 018250 58 TVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTEND---FNTLFRTLPPRKYYAAGVPGSFHGR- 133 (359)
Q Consensus 58 ~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~ND---Fn~lf~~l~~~~~~~~~vpgsfy~~- 133 (359)
..+|||+|||+|..|..+. +... ++=.||..|+.... .....+..+ +-.++. ++....
T Consensus 133 G~~VLDLGaG~G~~t~~lA--------diVG------~~G~VyAVD~s~r~~~dLl~~ak~r~-NI~~I~---~Da~~p~ 194 (293)
T PTZ00146 133 GSKVLYLGAASGTTVSHVS--------DLVG------PEGVVYAVEFSHRSGRDLTNMAKKRP-NIVPII---EDARYPQ 194 (293)
T ss_pred CCEEEEeCCcCCHHHHHHH--------HHhC------CCCEEEEEECcHHHHHHHHHHhhhcC-CCEEEE---CCccChh
Confidence 3689999999999888775 2221 22378888877653 222222211 111222 122111
Q ss_pred --CCCCCceeEEEecCc
Q 018250 134 --LFPKSTLHVVNSFNA 148 (359)
Q Consensus 134 --l~p~~s~d~~~S~~a 148 (359)
.++..++|+|++..+
T Consensus 195 ~y~~~~~~vDvV~~Dva 211 (293)
T PTZ00146 195 KYRMLVPMVDVIFADVA 211 (293)
T ss_pred hhhcccCCCCEEEEeCC
Confidence 123458999999886
No 75
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=98.06 E-value=1e-05 Score=71.57 Aligned_cols=109 Identities=18% Similarity=0.224 Sum_probs=69.2
Q ss_pred ceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCCCccc-ccccCcccccCCCC
Q 018250 58 TVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPPRKYY-AAGVPGSFHGRLFP 136 (359)
Q Consensus 58 ~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~~-~~~vpgsfy~~l~p 136 (359)
..+|+|+|||+|..++.+. ++ .|...|++.|.-.......-+++.....- +..+..+.++.+ +
T Consensus 32 ~~~vLDlG~G~G~i~~~la--------~~-------~~~~~v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~~~~~-~ 95 (170)
T PF05175_consen 32 GGRVLDLGCGSGVISLALA--------KR-------GPDAKVTAVDINPDALELAKRNAERNGLENVEVVQSDLFEAL-P 95 (170)
T ss_dssp TCEEEEETSTTSHHHHHHH--------HT-------STCEEEEEEESBHHHHHHHHHHHHHTTCTTEEEEESSTTTTC-C
T ss_pred CCeEEEecCChHHHHHHHH--------Hh-------CCCCEEEEEcCCHHHHHHHHHHHHhcCccccccccccccccc-c
Confidence 5689999999999999884 33 35667999998876655554443321100 333334665544 4
Q ss_pred CCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceeEEEec
Q 018250 137 KSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLMVFSLI 215 (359)
Q Consensus 137 ~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lvl~~~ 215 (359)
++++|+|+|+--+|+-.. ....-+..|++.-.+-|+|||.+++..-
T Consensus 96 ~~~fD~Iv~NPP~~~~~~---------------------------------~~~~~~~~~i~~a~~~Lk~~G~l~lv~~ 141 (170)
T PF05175_consen 96 DGKFDLIVSNPPFHAGGD---------------------------------DGLDLLRDFIEQARRYLKPGGRLFLVIN 141 (170)
T ss_dssp TTCEEEEEE---SBTTSH---------------------------------CHHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ccceeEEEEccchhcccc---------------------------------cchhhHHHHHHHHHHhccCCCEEEEEee
Confidence 799999999644443110 0111245678788899999999988664
No 76
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=98.04 E-value=2e-05 Score=64.64 Aligned_cols=99 Identities=20% Similarity=0.172 Sum_probs=61.0
Q ss_pred ceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCC---Cc-ccccccCcccccC
Q 018250 58 TVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPP---RK-YYAAGVPGSFHGR 133 (359)
Q Consensus 58 ~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~---~~-~~~~~vpgsfy~~ 133 (359)
..+|+|+|||+|..+..++ ++ .|+.+++..|.........-+.+.. .. .++. ++....
T Consensus 20 ~~~vldlG~G~G~~~~~l~--------~~-------~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~ 81 (124)
T TIGR02469 20 GDVLWDIGAGSGSITIEAA--------RL-------VPNGRVYAIERNPEALRLIERNARRFGVSNIVIVE---GDAPEA 81 (124)
T ss_pred CCEEEEeCCCCCHHHHHHH--------HH-------CCCceEEEEcCCHHHHHHHHHHHHHhCCCceEEEe---cccccc
Confidence 3599999999999999884 22 2346899999876555443332211 11 1111 222111
Q ss_pred C-CCCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceeEE
Q 018250 134 L-FPKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLMVF 212 (359)
Q Consensus 134 l-~p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lvl 212 (359)
+ ...+++|++++..+.+ ++..+++.-++.|+|||++++
T Consensus 82 ~~~~~~~~D~v~~~~~~~-----------------------------------------~~~~~l~~~~~~Lk~gG~li~ 120 (124)
T TIGR02469 82 LEDSLPEPDRVFIGGSGG-----------------------------------------LLQEILEAIWRRLRPGGRIVL 120 (124)
T ss_pred ChhhcCCCCEEEECCcch-----------------------------------------hHHHHHHHHHHHcCCCCEEEE
Confidence 1 2235788887743221 223578888999999999999
Q ss_pred Eec
Q 018250 213 SLI 215 (359)
Q Consensus 213 ~~~ 215 (359)
++.
T Consensus 121 ~~~ 123 (124)
T TIGR02469 121 NAI 123 (124)
T ss_pred Eec
Confidence 863
No 77
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=98.04 E-value=2.6e-05 Score=68.45 Aligned_cols=108 Identities=13% Similarity=0.102 Sum_probs=64.9
Q ss_pred ccccCCCCCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCc
Q 018250 129 SFHGRLFPKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGG 208 (359)
Q Consensus 129 sfy~~l~p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG 208 (359)
+..+..++++++|++++++++||+. |...+|+.-++-|||||
T Consensus 34 d~~~lp~~~~~fD~v~~~~~l~~~~--------------------------------------d~~~~l~ei~rvLkpGG 75 (160)
T PLN02232 34 DAIDLPFDDCEFDAVTMGYGLRNVV--------------------------------------DRLRAMKEMYRVLKPGS 75 (160)
T ss_pred chhhCCCCCCCeeEEEecchhhcCC--------------------------------------CHHHHHHHHHHHcCcCe
Confidence 4445557899999999999999964 23347778899999999
Q ss_pred eeEEEeccCCCCCCCCCcchhHHHHHH-HHHHHHHHHcCCCChhhhccCCc----cccCCCHHHHHHHHHhCCceeEeEE
Q 018250 209 LMVFSLITGPSGIPFADTVQGATYNFL-GSCLWDLAKMGVISEEKARTFNV----PAYFPYVEELESLIQRNGHFAMERM 283 (359)
Q Consensus 209 ~lvl~~~g~~~~~~~~~~~~~~~~~~l-~~al~~lv~eGli~~e~~d~f~~----P~y~ps~~E~~~~i~~~G~F~i~~l 283 (359)
++++.-++.++.... ...+... ... +.--|.+... .+.+.. -..+++.+|+.+.++++| |+..+.
T Consensus 76 ~l~i~d~~~~~~~~~-----~~~~~~~~~~~---~~~~~~~~~~-~~~y~yl~~si~~f~~~~el~~ll~~aG-F~~~~~ 145 (160)
T PLN02232 76 RVSILDFNKSNQSVT-----TFMQGWMIDNV---VVPVATVYDL-AKEYEYLKYSINGYLTGEELETLALEAG-FSSACH 145 (160)
T ss_pred EEEEEECCCCChHHH-----HHHHHHHccch---HhhhhHHhCC-hHHHHhHHHHHHHCcCHHHHHHHHHHcC-CCcceE
Confidence 999987776542110 0000000 000 0000111000 111111 125789999999999999 975544
Q ss_pred E
Q 018250 284 Q 284 (359)
Q Consensus 284 e 284 (359)
.
T Consensus 146 ~ 146 (160)
T PLN02232 146 Y 146 (160)
T ss_pred E
Confidence 3
No 78
>PRK04266 fibrillarin; Provisional
Probab=98.03 E-value=4.2e-05 Score=71.13 Aligned_cols=101 Identities=11% Similarity=0.070 Sum_probs=60.0
Q ss_pred ceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCC-Cc-ccccccCccccc---
Q 018250 58 TVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPP-RK-YYAAGVPGSFHG--- 132 (359)
Q Consensus 58 ~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~-~~-~~~~~vpgsfy~--- 132 (359)
..+|+|+|||+|..|..+. +.. +.-.|+.-|+...+...+.+.... .. .++. ++...
T Consensus 73 g~~VlD~G~G~G~~~~~la--------~~v-------~~g~V~avD~~~~ml~~l~~~a~~~~nv~~i~---~D~~~~~~ 134 (226)
T PRK04266 73 GSKVLYLGAASGTTVSHVS--------DIV-------EEGVVYAVEFAPRPMRELLEVAEERKNIIPIL---ADARKPER 134 (226)
T ss_pred CCEEEEEccCCCHHHHHHH--------Hhc-------CCCeEEEEECCHHHHHHHHHHhhhcCCcEEEE---CCCCCcch
Confidence 4699999999999988774 222 123788888887654433322211 11 1122 22221
Q ss_pred -CCCCCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceeE
Q 018250 133 -RLFPKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLMV 211 (359)
Q Consensus 133 -~l~p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lv 211 (359)
.-++ +++|++++..+..| .-..+|+.-++-|||||+++
T Consensus 135 ~~~l~-~~~D~i~~d~~~p~----------------------------------------~~~~~L~~~~r~LKpGG~lv 173 (226)
T PRK04266 135 YAHVV-EKVDVIYQDVAQPN----------------------------------------QAEIAIDNAEFFLKDGGYLL 173 (226)
T ss_pred hhhcc-ccCCEEEECCCChh----------------------------------------HHHHHHHHHHHhcCCCcEEE
Confidence 1123 56999997543222 00124566678899999999
Q ss_pred EEeccC
Q 018250 212 FSLITG 217 (359)
Q Consensus 212 l~~~g~ 217 (359)
+++..+
T Consensus 174 I~v~~~ 179 (226)
T PRK04266 174 LAIKAR 179 (226)
T ss_pred EEEecc
Confidence 987654
No 79
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.02 E-value=2.1e-05 Score=71.82 Aligned_cols=81 Identities=10% Similarity=0.047 Sum_probs=50.1
Q ss_pred ceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCCCcc--cccccCcccccCCC
Q 018250 58 TVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPPRKY--YAAGVPGSFHGRLF 135 (359)
Q Consensus 58 ~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~--~~~~vpgsfy~~l~ 135 (359)
..+|+|+|||+|..|..+. +... +.-+|+..|.-.+.-...-+++....+ -+.-+.|++.+-+.
T Consensus 73 ~~~VLDiG~GsG~~~~~la--------~~~~------~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~ 138 (205)
T PRK13944 73 GMKILEVGTGSGYQAAVCA--------EAIE------RRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLE 138 (205)
T ss_pred CCEEEEECcCccHHHHHHH--------HhcC------CCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCc
Confidence 4789999999999998774 2221 124788888877554433333321111 01122345554444
Q ss_pred CCCceeEEEecCccccc
Q 018250 136 PKSTLHVVNSFNAMHWL 152 (359)
Q Consensus 136 p~~s~d~~~S~~alHWL 152 (359)
+.+++|.+++..+++++
T Consensus 139 ~~~~fD~Ii~~~~~~~~ 155 (205)
T PRK13944 139 KHAPFDAIIVTAAASTI 155 (205)
T ss_pred cCCCccEEEEccCcchh
Confidence 56799999999888763
No 80
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=98.00 E-value=1.8e-05 Score=71.46 Aligned_cols=98 Identities=17% Similarity=0.178 Sum_probs=63.8
Q ss_pred ceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCC---CcccccccCcccccCC
Q 018250 58 TVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPP---RKYYAAGVPGSFHGRL 134 (359)
Q Consensus 58 ~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~---~~~~~~~vpgsfy~~l 134 (359)
..+|+|+|||+|..++.++ .. .|..+|+..|.....-...-+.... .. +.-+.++..+-.
T Consensus 46 g~~VLDiGcGtG~~al~la--------~~-------~~~~~V~giD~s~~~l~~A~~~~~~~~l~~--i~~~~~d~~~~~ 108 (187)
T PRK00107 46 GERVLDVGSGAGFPGIPLA--------IA-------RPELKVTLVDSLGKKIAFLREVAAELGLKN--VTVVHGRAEEFG 108 (187)
T ss_pred CCeEEEEcCCCCHHHHHHH--------HH-------CCCCeEEEEeCcHHHHHHHHHHHHHcCCCC--EEEEeccHhhCC
Confidence 6899999999999999884 22 2456899999877554333222211 11 222233443322
Q ss_pred CCCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceeEEEe
Q 018250 135 FPKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLMVFSL 214 (359)
Q Consensus 135 ~p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lvl~~ 214 (359)
. ++++|+++|+.. .++..|++..++-|+|||++++..
T Consensus 109 ~-~~~fDlV~~~~~------------------------------------------~~~~~~l~~~~~~LkpGG~lv~~~ 145 (187)
T PRK00107 109 Q-EEKFDVVTSRAV------------------------------------------ASLSDLVELCLPLLKPGGRFLALK 145 (187)
T ss_pred C-CCCccEEEEccc------------------------------------------cCHHHHHHHHHHhcCCCeEEEEEe
Confidence 3 679999998531 023457888899999999999886
Q ss_pred c
Q 018250 215 I 215 (359)
Q Consensus 215 ~ 215 (359)
+
T Consensus 146 ~ 146 (187)
T PRK00107 146 G 146 (187)
T ss_pred C
Confidence 3
No 81
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=97.98 E-value=1.3e-05 Score=79.87 Aligned_cols=107 Identities=13% Similarity=0.211 Sum_probs=73.6
Q ss_pred ceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCC---Ccc-cccccCcccc--
Q 018250 58 TVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPP---RKY-YAAGVPGSFH-- 131 (359)
Q Consensus 58 ~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~---~~~-~~~~vpgsfy-- 131 (359)
...++|+|||+|..++.++ ++ .|+..++.-|+.......+-+.... ..+ ++. ++..
T Consensus 123 ~p~vLEIGcGsG~~ll~lA--------~~-------~P~~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~---~DA~~l 184 (390)
T PRK14121 123 EKILIEIGFGSGRHLLYQA--------KN-------NPNKLFIGIEIHTPSIEQVLKQIELLNLKNLLIIN---YDARLL 184 (390)
T ss_pred CCeEEEEcCcccHHHHHHH--------Hh-------CCCCCEEEEECCHHHHHHHHHHHHHcCCCcEEEEE---CCHHHh
Confidence 4589999999999998885 22 3677889999887666665544322 122 232 3332
Q ss_pred cCCCCCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceeE
Q 018250 132 GRLFPKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLMV 211 (359)
Q Consensus 132 ~~l~p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lv 211 (359)
-..+|++++|.+++++...|..+... ++ -...||+.-++-|+|||.+.
T Consensus 185 l~~~~~~s~D~I~lnFPdPW~KkrHR-------------Rl-------------------v~~~fL~e~~RvLkpGG~l~ 232 (390)
T PRK14121 185 LELLPSNSVEKIFVHFPVPWDKKPHR-------------RV-------------------ISEDFLNEALRVLKPGGTLE 232 (390)
T ss_pred hhhCCCCceeEEEEeCCCCccccchh-------------hc-------------------cHHHHHHHHHHHcCCCcEEE
Confidence 23589999999999988888322110 01 12458888899999999998
Q ss_pred EEe
Q 018250 212 FSL 214 (359)
Q Consensus 212 l~~ 214 (359)
+.+
T Consensus 233 l~T 235 (390)
T PRK14121 233 LRT 235 (390)
T ss_pred EEE
Confidence 887
No 82
>PRK14967 putative methyltransferase; Provisional
Probab=97.98 E-value=5.7e-05 Score=69.70 Aligned_cols=124 Identities=15% Similarity=0.074 Sum_probs=69.1
Q ss_pred ceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCCCcccccccCcccccCCCCC
Q 018250 58 TVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPPRKYYAAGVPGSFHGRLFPK 137 (359)
Q Consensus 58 ~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~~~~~vpgsfy~~l~p~ 137 (359)
..+|+|+|||+|..++.+. +. ...+++..|+........-++......-+..+-+++.. .+++
T Consensus 37 ~~~vLDlGcG~G~~~~~la--------~~--------~~~~v~~vD~s~~~l~~a~~n~~~~~~~~~~~~~d~~~-~~~~ 99 (223)
T PRK14967 37 GRRVLDLCTGSGALAVAAA--------AA--------GAGSVTAVDISRRAVRSARLNALLAGVDVDVRRGDWAR-AVEF 99 (223)
T ss_pred CCeEEEecCCHHHHHHHHH--------Hc--------CCCeEEEEECCHHHHHHHHHHHHHhCCeeEEEECchhh-hccC
Confidence 4689999999999988774 11 11378888987755433222221111101222346654 4678
Q ss_pred CceeEEEecCcccccCCCCccccc-ccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceeEEEecc
Q 018250 138 STLHVVNSFNAMHWLSKTPKVNML-EKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLMVFSLIT 216 (359)
Q Consensus 138 ~s~d~~~S~~alHWLs~~p~~~~~-~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lvl~~~g 216 (359)
+++|+++++--.+..+... ..+ ....+|+.| . -...++..|++.-.+-|+|||++++....
T Consensus 100 ~~fD~Vi~npPy~~~~~~~--~~~~~~~~~~~~~------~----------~~~~~~~~~l~~a~~~Lk~gG~l~~~~~~ 161 (223)
T PRK14967 100 RPFDVVVSNPPYVPAPPDA--PPSRGPARAWDAG------P----------DGRAVLDRLCDAAPALLAPGGSLLLVQSE 161 (223)
T ss_pred CCeeEEEECCCCCCCCccc--ccccChhHhhhCC------C----------cHHHHHHHHHHHHHHhcCCCcEEEEEEec
Confidence 8999999975433322111 000 000011110 0 01234667888888999999999977643
No 83
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=97.97 E-value=0.0001 Score=68.21 Aligned_cols=141 Identities=18% Similarity=0.163 Sum_probs=85.8
Q ss_pred ceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCC--C-------ccc----cc
Q 018250 58 TVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPP--R-------KYY----AA 124 (359)
Q Consensus 58 ~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~--~-------~~~----~~ 124 (359)
..||+|+|||.|.|++-+++ + ..+|+..|+...--..+++...- . ..+ +.
T Consensus 38 ~~rvL~~gCG~G~da~~LA~--------~---------G~~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~ 100 (218)
T PRK13255 38 GSRVLVPLCGKSLDMLWLAE--------Q---------GHEVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEIT 100 (218)
T ss_pred CCeEEEeCCCChHhHHHHHh--------C---------CCeEEEEccCHHHHHHHHHHcCCCccccccccccccccCceE
Confidence 46999999999999998852 1 35788888887655554432110 0 000 00
Q ss_pred ccCcccccCCC-CCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018250 125 GVPGSFHGRLF-PKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEE 203 (359)
Q Consensus 125 ~vpgsfy~~l~-p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~E 203 (359)
-.-+++++... ....+|+++-..++|-+ |+. +...+++.-++-
T Consensus 101 ~~~~D~~~l~~~~~~~fd~v~D~~~~~~l---~~~---------------------------------~R~~~~~~l~~l 144 (218)
T PRK13255 101 IYCGDFFALTAADLADVDAVYDRAALIAL---PEE---------------------------------MRERYVQQLAAL 144 (218)
T ss_pred EEECcccCCCcccCCCeeEEEehHhHhhC---CHH---------------------------------HHHHHHHHHHHH
Confidence 01124443321 12467888888877743 321 334566778899
Q ss_pred hccCceeEEEeccCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCChhhhccCCccccCCCHHHHHHHHHhCCceeEeEE
Q 018250 204 LVPGGLMVFSLITGPSGIPFADTVQGATYNFLGSCLWDLAKMGVISEEKARTFNVPAYFPYVEELESLIQRNGHFAMERM 283 (359)
Q Consensus 204 L~pGG~lvl~~~g~~~~~~~~~~~~~~~~~~l~~al~~lv~eGli~~e~~d~f~~P~y~ps~~E~~~~i~~~G~F~i~~l 283 (359)
|+|||++++.+....... ..-|-|..+.+|+++.+. .+ |+|+.+
T Consensus 145 L~pgG~~~l~~~~~~~~~----------------------------------~~gPp~~~~~~el~~~~~-~~-~~i~~~ 188 (218)
T PRK13255 145 LPAGCRGLLVTLDYPQEE----------------------------------LAGPPFSVSDEEVEALYA-GC-FEIELL 188 (218)
T ss_pred cCCCCeEEEEEEEeCCcc----------------------------------CCCCCCCCCHHHHHHHhc-CC-ceEEEe
Confidence 999997665554333210 011336789999999885 33 899888
Q ss_pred EEee
Q 018250 284 QQLD 287 (359)
Q Consensus 284 e~~~ 287 (359)
+...
T Consensus 189 ~~~~ 192 (218)
T PRK13255 189 ERQD 192 (218)
T ss_pred eecc
Confidence 8754
No 84
>PHA03411 putative methyltransferase; Provisional
Probab=97.97 E-value=5.3e-05 Score=72.18 Aligned_cols=121 Identities=16% Similarity=0.145 Sum_probs=73.3
Q ss_pred ceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCCCcccccccCcccccCCCCC
Q 018250 58 TVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPPRKYYAAGVPGSFHGRLFPK 137 (359)
Q Consensus 58 ~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~~~~~vpgsfy~~l~p~ 137 (359)
..+|+|+|||+|..++.+. ++. +..+++..|+-.......-+.++. --+ +.+++.+- .++
T Consensus 65 ~grVLDLGcGsGilsl~la--------~r~-------~~~~V~gVDisp~al~~Ar~n~~~-v~~---v~~D~~e~-~~~ 124 (279)
T PHA03411 65 TGKVLDLCAGIGRLSFCML--------HRC-------KPEKIVCVELNPEFARIGKRLLPE-AEW---ITSDVFEF-ESN 124 (279)
T ss_pred CCeEEEcCCCCCHHHHHHH--------HhC-------CCCEEEEEECCHHHHHHHHHhCcC-CEE---EECchhhh-ccc
Confidence 3589999999998887763 221 235899999987554433333331 112 23455433 345
Q ss_pred CceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHH--HHHHHHHHHHHhhccCceeEEEec
Q 018250 138 STLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRS--DFESILNARAEELVPGGLMVFSLI 215 (359)
Q Consensus 138 ~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~--D~~~fL~~Ra~EL~pGG~lvl~~~ 215 (359)
.++|+|+|+-.++++..... .+ -.+|..|.. ..+ .+..||+..+.-|+|+|.+.+...
T Consensus 125 ~kFDlIIsNPPF~~l~~~d~--~~--~~~~~GG~~----------------g~~~l~~~~~l~~v~~~L~p~G~~~~~ys 184 (279)
T PHA03411 125 EKFDVVISNPPFGKINTTDT--KD--VFEYTGGEF----------------EFKVMTLGQKFADVGYFIVPTGSAGFAYS 184 (279)
T ss_pred CCCcEEEEcCCccccCchhh--hh--hhhhccCcc----------------ccccccHHHHHhhhHheecCCceEEEEEe
Confidence 78999999999998642111 10 011211100 001 256789999999999998888765
Q ss_pred cCC
Q 018250 216 TGP 218 (359)
Q Consensus 216 g~~ 218 (359)
|++
T Consensus 185 s~~ 187 (279)
T PHA03411 185 GRP 187 (279)
T ss_pred ccc
Confidence 444
No 85
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=97.97 E-value=3.3e-05 Score=70.51 Aligned_cols=115 Identities=14% Similarity=0.251 Sum_probs=67.8
Q ss_pred CcceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCCCcccccccCcccccCCC
Q 018250 56 SYTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPPRKYYAAGVPGSFHGRLF 135 (359)
Q Consensus 56 ~~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~~~~~vpgsfy~~l~ 135 (359)
+....|||+|||.+..+..+ . ....|+-=||...+ . ++.++ +.-.-++
T Consensus 71 ~~~~viaD~GCGdA~la~~~--------~----------~~~~V~SfDLva~n----------~--~Vtac--dia~vPL 118 (219)
T PF05148_consen 71 PKSLVIADFGCGDAKLAKAV--------P----------NKHKVHSFDLVAPN----------P--RVTAC--DIANVPL 118 (219)
T ss_dssp -TTS-EEEES-TT-HHHHH--------------------S---EEEEESS-SS----------T--TEEES---TTS-S-
T ss_pred CCCEEEEECCCchHHHHHhc--------c----------cCceEEEeeccCCC----------C--CEEEe--cCccCcC
Confidence 45689999999999877433 1 12466667776421 0 12211 3335568
Q ss_pred CCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceeEEEec
Q 018250 136 PKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLMVFSLI 215 (359)
Q Consensus 136 p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lvl~~~ 215 (359)
+++|+|+++.+.+|.= .||..||+--.+-|||||.|.+.-.
T Consensus 119 ~~~svDv~VfcLSLMG---------------------------------------Tn~~~fi~EA~RvLK~~G~L~IAEV 159 (219)
T PF05148_consen 119 EDESVDVAVFCLSLMG---------------------------------------TNWPDFIREANRVLKPGGILKIAEV 159 (219)
T ss_dssp -TT-EEEEEEES---S---------------------------------------S-HHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CCCceeEEEEEhhhhC---------------------------------------CCcHHHHHHHHheeccCcEEEEEEe
Confidence 9999999999877653 2778899999999999999988764
Q ss_pred cCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCChhhhccCCccccCCCHHHHHHHHHhCCceeEeEEEE
Q 018250 216 TGPSGIPFADTVQGATYNFLGSCLWDLAKMGVISEEKARTFNVPAYFPYVEELESLIQRNGHFAMERMQQ 285 (359)
Q Consensus 216 g~~~~~~~~~~~~~~~~~~l~~al~~lv~eGli~~e~~d~f~~P~y~ps~~E~~~~i~~~G~F~i~~le~ 285 (359)
-. -|.+.+++...|+.-| |++.....
T Consensus 160 ~S-------------------------------------------Rf~~~~~F~~~~~~~G-F~~~~~d~ 185 (219)
T PF05148_consen 160 KS-------------------------------------------RFENVKQFIKALKKLG-FKLKSKDE 185 (219)
T ss_dssp GG-------------------------------------------G-S-HHHHHHHHHCTT-EEEEEEE-
T ss_pred cc-------------------------------------------cCcCHHHHHHHHHHCC-CeEEeccc
Confidence 21 2335778888888889 98877654
No 86
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=97.96 E-value=3e-05 Score=72.77 Aligned_cols=122 Identities=16% Similarity=0.184 Sum_probs=79.0
Q ss_pred CcceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCC----Cc-ccccccCccc
Q 018250 56 SYTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPP----RK-YYAAGVPGSF 130 (359)
Q Consensus 56 ~~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~----~~-~~~~~vpgsf 130 (359)
+...+|+|+|||+|..++.+.+ ++ ++.++...++-.-+.....+++.. .+ .++.+ ++
T Consensus 43 ~~~~~IlDlGaG~G~l~L~la~--------r~-------~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~---Di 104 (248)
T COG4123 43 PKKGRILDLGAGNGALGLLLAQ--------RT-------EKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEA---DI 104 (248)
T ss_pred ccCCeEEEecCCcCHHHHHHhc--------cC-------CCCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehh---hH
Confidence 3489999999999999999863 22 235666666665555555555432 11 11221 22
Q ss_pred c--cCCCCCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCc
Q 018250 131 H--GRLFPKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGG 208 (359)
Q Consensus 131 y--~~l~p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG 208 (359)
- ....+..++|+|+| .|+-... ... ..+.+..+..+.+..-++..+++.-++-|||||
T Consensus 105 ~~~~~~~~~~~fD~Ii~---------NPPyf~~---------~~~--~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G 164 (248)
T COG4123 105 KEFLKALVFASFDLIIC---------NPPYFKQ---------GSR--LNENPLRAIARHEITLDLEDLIRAAAKLLKPGG 164 (248)
T ss_pred HHhhhcccccccCEEEe---------CCCCCCC---------ccc--cCcChhhhhhhhhhcCCHHHHHHHHHHHccCCC
Confidence 1 23344558999999 4554332 121 224455566677778889999999999999999
Q ss_pred eeEEEec
Q 018250 209 LMVFSLI 215 (359)
Q Consensus 209 ~lvl~~~ 215 (359)
.+.+...
T Consensus 165 ~l~~V~r 171 (248)
T COG4123 165 RLAFVHR 171 (248)
T ss_pred EEEEEec
Confidence 9988873
No 87
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=97.93 E-value=0.00018 Score=65.70 Aligned_cols=154 Identities=16% Similarity=0.200 Sum_probs=99.3
Q ss_pred EEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCC------CcccccccCc---cc
Q 018250 60 RIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPP------RKYYAAGVPG---SF 130 (359)
Q Consensus 60 ~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~------~~~~~~~vpg---sf 130 (359)
+||++|||||--+.-++ .. .|.+++.-+|...+-+.++-.-+.. ..-...-|.. +-
T Consensus 28 ~vLEiaSGtGqHa~~FA--------~~-------lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~ 92 (204)
T PF06080_consen 28 RVLEIASGTGQHAVYFA--------QA-------LPHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPW 92 (204)
T ss_pred eEEEEcCCccHHHHHHH--------HH-------CCCCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCcc
Confidence 79999999999887774 22 4678999999999887776543221 1100010000 00
Q ss_pred c-cCCCCCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCce
Q 018250 131 H-GRLFPKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGL 209 (359)
Q Consensus 131 y-~~l~p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~ 209 (359)
- .-.++..++|.++|...+|-.+- . .-..+++.-++-|+|||.
T Consensus 93 ~~~~~~~~~~~D~i~~~N~lHI~p~---~---------------------------------~~~~lf~~a~~~L~~gG~ 136 (204)
T PF06080_consen 93 ELPAPLSPESFDAIFCINMLHISPW---S---------------------------------AVEGLFAGAARLLKPGGL 136 (204)
T ss_pred ccccccCCCCcceeeehhHHHhcCH---H---------------------------------HHHHHHHHHHHhCCCCCE
Confidence 0 00125789999999999998431 1 122366677999999999
Q ss_pred eEEEeccCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCChhhhccCCccccCCCHHHHHHHHHhCCceeEeEEE
Q 018250 210 MVFSLITGPSGIPFADTVQGATYNFLGSCLWDLAKMGVISEEKARTFNVPAYFPYVEELESLIQRNGHFAMERMQ 284 (359)
Q Consensus 210 lvl~~~g~~~~~~~~~~~~~~~~~~l~~al~~lv~eGli~~e~~d~f~~P~y~ps~~E~~~~i~~~G~F~i~~le 284 (359)
|++--+=..++..+++. + ..+...|++ -+.-|-.+..+++.++-.++| ++.+...
T Consensus 137 L~~YGPF~~~G~~ts~S-N----~~FD~sLr~--------------rdp~~GiRD~e~v~~lA~~~G-L~l~~~~ 191 (204)
T PF06080_consen 137 LFLYGPFNRDGKFTSES-N----AAFDASLRS--------------RDPEWGIRDIEDVEALAAAHG-LELEEDI 191 (204)
T ss_pred EEEeCCcccCCEeCCcH-H----HHHHHHHhc--------------CCCCcCccCHHHHHHHHHHCC-CccCccc
Confidence 98887766665544432 1 223334442 244478899999999999999 7765443
No 88
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=97.93 E-value=4.2e-05 Score=59.04 Aligned_cols=98 Identities=21% Similarity=0.284 Sum_probs=63.9
Q ss_pred EEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCC--C--CcccccccCcccccCC-
Q 018250 60 RIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLP--P--RKYYAAGVPGSFHGRL- 134 (359)
Q Consensus 60 ~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~--~--~~~~~~~vpgsfy~~l- 134 (359)
+|+|+|||+|.++..++. .+..+++..|+..+.....-+... . ...++. +++.+..
T Consensus 1 ~ildig~G~G~~~~~~~~----------------~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~ 61 (107)
T cd02440 1 RVLDLGCGTGALALALAS----------------GPGARVTGVDISPVALELARKAAAALLADNVEVLK---GDAEELPP 61 (107)
T ss_pred CeEEEcCCccHHHHHHhc----------------CCCCEEEEEeCCHHHHHHHHHHHhcccccceEEEE---cChhhhcc
Confidence 589999999998877741 123588889987655444331111 1 111222 2333333
Q ss_pred CCCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceeEEE
Q 018250 135 FPKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLMVFS 213 (359)
Q Consensus 135 ~p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lvl~ 213 (359)
.+.+++|+++++..+++.+ .+...+++...+-|+|||+++++
T Consensus 62 ~~~~~~d~i~~~~~~~~~~-------------------------------------~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 62 EADESFDVIISDPPLHHLV-------------------------------------EDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred ccCCceEEEEEccceeehh-------------------------------------hHHHHHHHHHHHHcCCCCEEEEE
Confidence 3668899999999999851 13445677777788999999886
No 89
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=97.88 E-value=6e-05 Score=72.40 Aligned_cols=123 Identities=15% Similarity=0.153 Sum_probs=70.4
Q ss_pred ceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCCCcc--cccccCcccccCCC
Q 018250 58 TVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPPRKY--YAAGVPGSFHGRLF 135 (359)
Q Consensus 58 ~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~--~~~~vpgsfy~~l~ 135 (359)
+.+|+|+|||+|..++.++ +. .|..+++..|+........-++.....+ -+.-+.+++.+. +
T Consensus 122 ~~~vLDlG~GsG~i~~~la--------~~-------~~~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~~-~ 185 (284)
T TIGR03533 122 VKRILDLCTGSGCIAIACA--------YA-------FPEAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFAA-L 185 (284)
T ss_pred CCEEEEEeCchhHHHHHHH--------HH-------CCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhc-c
Confidence 4689999999999999884 22 2456899999976555444333221100 011122455443 4
Q ss_pred CCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHH----HHHH--HHHHHHHHHHHHHHHHhhccCce
Q 018250 136 PKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVH----ETFQ--AQFRSDFESILNARAEELVPGGL 209 (359)
Q Consensus 136 p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~----~~y~--~Q~~~D~~~fL~~Ra~EL~pGG~ 209 (359)
|++++|+++|+ |+-+....- ...++++. .|.. +........|++.-.+-|+|||+
T Consensus 186 ~~~~fD~Iv~N---------PPy~~~~~~----------~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~ 246 (284)
T TIGR03533 186 PGRKYDLIVSN---------PPYVDAEDM----------ADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGV 246 (284)
T ss_pred CCCCccEEEEC---------CCCCCccch----------hhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCE
Confidence 67789999996 333221100 00111110 0000 01123456688888899999999
Q ss_pred eEEEec
Q 018250 210 MVFSLI 215 (359)
Q Consensus 210 lvl~~~ 215 (359)
+++.+.
T Consensus 247 l~~e~g 252 (284)
T TIGR03533 247 LVVEVG 252 (284)
T ss_pred EEEEEC
Confidence 998875
No 90
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=97.85 E-value=9e-05 Score=66.45 Aligned_cols=104 Identities=20% Similarity=0.176 Sum_probs=63.1
Q ss_pred cceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCCCcccccccCccccc----
Q 018250 57 YTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPPRKYYAAGVPGSFHG---- 132 (359)
Q Consensus 57 ~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~~~~~vpgsfy~---- 132 (359)
...+|+|+|||+|..|..+. +++. +...++..|+.... ..+. --++. +++.+
T Consensus 32 ~g~~VLDiG~GtG~~~~~l~--------~~~~------~~~~v~~vDis~~~------~~~~-i~~~~---~d~~~~~~~ 87 (188)
T TIGR00438 32 PGDTVLDLGAAPGGWSQVAV--------EQVG------GKGRVIAVDLQPMK------PIEN-VDFIR---GDFTDEEVL 87 (188)
T ss_pred CCCEEEEecCCCCHHHHHHH--------HHhC------CCceEEEEeccccc------cCCC-ceEEE---eeCCChhHH
Confidence 35689999999999888774 2221 22367777776522 1111 11222 23322
Q ss_pred ----CCCCCCceeEEEecCccc----ccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 018250 133 ----RLFPKSTLHVVNSFNAMH----WLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEEL 204 (359)
Q Consensus 133 ----~l~p~~s~d~~~S~~alH----WLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL 204 (359)
..+|++++|+++|..+.| |.-..+ ....+...+|+.-.+-|
T Consensus 88 ~~l~~~~~~~~~D~V~~~~~~~~~g~~~~~~~-------------------------------~~~~~~~~~l~~~~~~L 136 (188)
T TIGR00438 88 NKIRERVGDDKVDVVMSDAAPNISGYWDIDHL-------------------------------RSIDLVELALDIAKEVL 136 (188)
T ss_pred HHHHHHhCCCCccEEEcCCCCCCCCCccccHH-------------------------------HHHHHHHHHHHHHHHHc
Confidence 135778999999977643 311100 01134567888889999
Q ss_pred ccCceeEEEec
Q 018250 205 VPGGLMVFSLI 215 (359)
Q Consensus 205 ~pGG~lvl~~~ 215 (359)
+|||++++..+
T Consensus 137 kpgG~lvi~~~ 147 (188)
T TIGR00438 137 KPKGNFVVKVF 147 (188)
T ss_pred cCCCEEEEEEc
Confidence 99999999764
No 91
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=97.81 E-value=8.1e-05 Score=68.35 Aligned_cols=81 Identities=10% Similarity=-0.040 Sum_probs=48.0
Q ss_pred cceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCCCcc-cccccCcccccCCC
Q 018250 57 YTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPPRKY-YAAGVPGSFHGRLF 135 (359)
Q Consensus 57 ~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~-~~~~vpgsfy~~l~ 135 (359)
...+|+|+|||+|..|..+. +.. .+.-.|+.-|.-.......-+.+....+ -+.-+-|+...-+.
T Consensus 76 ~g~~VLdIG~GsG~~t~~la--------~~~------~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd~~~~~~ 141 (212)
T PRK13942 76 EGMKVLEIGTGSGYHAAVVA--------EIV------GKSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVGDGTLGYE 141 (212)
T ss_pred CcCEEEEECCcccHHHHHHH--------Hhc------CCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCC
Confidence 35799999999999998774 221 1234778777765444333222221000 01222345555556
Q ss_pred CCCceeEEEecCcccc
Q 018250 136 PKSTLHVVNSFNAMHW 151 (359)
Q Consensus 136 p~~s~d~~~S~~alHW 151 (359)
+.+.+|+|++..+.+.
T Consensus 142 ~~~~fD~I~~~~~~~~ 157 (212)
T PRK13942 142 ENAPYDRIYVTAAGPD 157 (212)
T ss_pred cCCCcCEEEECCCccc
Confidence 6788999999877543
No 92
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=97.80 E-value=6.4e-05 Score=70.40 Aligned_cols=87 Identities=16% Similarity=0.254 Sum_probs=60.1
Q ss_pred CcceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCCCcccccccCcccccCCC
Q 018250 56 SYTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPPRKYYAAGVPGSFHGRLF 135 (359)
Q Consensus 56 ~~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~~~~~vpgsfy~~l~ 135 (359)
+..+.|+|+|||.+..+... + -.|+--||..-+ ..+-+| ++-+-++
T Consensus 179 ~~~~vIaD~GCGEakiA~~~--------~------------~kV~SfDL~a~~----------~~V~~c----Dm~~vPl 224 (325)
T KOG3045|consen 179 PKNIVIADFGCGEAKIASSE--------R------------HKVHSFDLVAVN----------ERVIAC----DMRNVPL 224 (325)
T ss_pred cCceEEEecccchhhhhhcc--------c------------cceeeeeeecCC----------Cceeec----cccCCcC
Confidence 56899999999998866511 1 144455554311 122222 3445668
Q ss_pred CCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceeEEEec
Q 018250 136 PKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLMVFSLI 215 (359)
Q Consensus 136 p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lvl~~~ 215 (359)
+++|+|+++.+.+|.= .||..|++--.+.|+|||.+.+.-.
T Consensus 225 ~d~svDvaV~CLSLMg---------------------------------------tn~~df~kEa~RiLk~gG~l~IAEv 265 (325)
T KOG3045|consen 225 EDESVDVAVFCLSLMG---------------------------------------TNLADFIKEANRILKPGGLLYIAEV 265 (325)
T ss_pred ccCcccEEEeeHhhhc---------------------------------------ccHHHHHHHHHHHhccCceEEEEeh
Confidence 9999999998766542 2677899999999999999988754
No 93
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=97.79 E-value=9e-05 Score=67.99 Aligned_cols=81 Identities=11% Similarity=-0.041 Sum_probs=46.8
Q ss_pred cceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCCCcc-cccccCcccccCCC
Q 018250 57 YTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPPRKY-YAAGVPGSFHGRLF 135 (359)
Q Consensus 57 ~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~-~~~~vpgsfy~~l~ 135 (359)
...+|+|+|||+|.+|..+. +... ++.+|+..|.-.......-+.+....+ -+.-+.++..+.+.
T Consensus 77 ~~~~VLDiG~GsG~~a~~la--------~~~~------~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~~~~~~ 142 (215)
T TIGR00080 77 PGMKVLEIGTGSGYQAAVLA--------EIVG------RDGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGDGTQGWE 142 (215)
T ss_pred CcCEEEEECCCccHHHHHHH--------HHhC------CCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCcccCCc
Confidence 35799999999999998774 2221 234788888876444333222221000 01122245544444
Q ss_pred CCCceeEEEecCcccc
Q 018250 136 PKSTLHVVNSFNAMHW 151 (359)
Q Consensus 136 p~~s~d~~~S~~alHW 151 (359)
+.+.+|++++..+.+.
T Consensus 143 ~~~~fD~Ii~~~~~~~ 158 (215)
T TIGR00080 143 PLAPYDRIYVTAAGPK 158 (215)
T ss_pred ccCCCCEEEEcCCccc
Confidence 5578999998765433
No 94
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=97.76 E-value=3.9e-05 Score=71.28 Aligned_cols=151 Identities=17% Similarity=0.144 Sum_probs=88.6
Q ss_pred cceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCCC---c-ccccccCccccc
Q 018250 57 YTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPPR---K-YYAAGVPGSFHG 132 (359)
Q Consensus 57 ~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~---~-~~~~~vpgsfy~ 132 (359)
.-.+|+|+|||-|..|..++ .. .+.|+..|+..-.-- +.+.-+.. . -|..+ .-.+
T Consensus 59 ~g~~vLDvGCGgG~Lse~mA--------r~---------Ga~VtgiD~se~~I~-~Ak~ha~e~gv~i~y~~~---~~ed 117 (243)
T COG2227 59 PGLRVLDVGCGGGILSEPLA--------RL---------GASVTGIDASEKPIE-VAKLHALESGVNIDYRQA---TVED 117 (243)
T ss_pred CCCeEEEecCCccHhhHHHH--------HC---------CCeeEEecCChHHHH-HHHHhhhhccccccchhh---hHHH
Confidence 35799999999998888774 11 378999999863321 11211110 0 02221 1123
Q ss_pred CCCCCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceeEE
Q 018250 133 RLFPKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLMVF 212 (359)
Q Consensus 133 ~l~p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lvl 212 (359)
.....+++|+|.|.-.|+.+.+ =..|++..++-+||||.+++
T Consensus 118 l~~~~~~FDvV~cmEVlEHv~d--------------------------------------p~~~~~~c~~lvkP~G~lf~ 159 (243)
T COG2227 118 LASAGGQFDVVTCMEVLEHVPD--------------------------------------PESFLRACAKLVKPGGILFL 159 (243)
T ss_pred HHhcCCCccEEEEhhHHHccCC--------------------------------------HHHHHHHHHHHcCCCcEEEE
Confidence 3345589999999777766332 12389999999999999999
Q ss_pred EeccCCCCCCCCCcchhHHH--HHHHHHHHHHHHcCCCChhhhccCCccccCCCHHHHHHHHHhCCceeEeEEEE
Q 018250 213 SLITGPSGIPFADTVQGATY--NFLGSCLWDLAKMGVISEEKARTFNVPAYFPYVEELESLIQRNGHFAMERMQQ 285 (359)
Q Consensus 213 ~~~g~~~~~~~~~~~~~~~~--~~l~~al~~lv~eGli~~e~~d~f~~P~y~ps~~E~~~~i~~~G~F~i~~le~ 285 (359)
+++.|.-. ..+. -..+-+++ ++-.|--+-+ -|-.++|+...+...| +.+....-
T Consensus 160 STinrt~k--------a~~~~i~~ae~vl~-~vP~gTH~~~---------k~irp~El~~~~~~~~-~~~~~~~g 215 (243)
T COG2227 160 STINRTLK--------AYLLAIIGAEYVLR-IVPKGTHDYR---------KFIKPAELIRWLLGAN-LKIIDRKG 215 (243)
T ss_pred eccccCHH--------HHHHHHHHHHHHHH-hcCCcchhHH---------HhcCHHHHHHhcccCC-ceEEeecc
Confidence 99875421 1111 11122222 3333332222 2346788888887766 66654443
No 95
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=97.75 E-value=0.00014 Score=65.64 Aligned_cols=148 Identities=18% Similarity=0.221 Sum_probs=88.6
Q ss_pred ceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCCCcccccccCcccccCC--C
Q 018250 58 TVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPPRKYYAAGVPGSFHGRL--F 135 (359)
Q Consensus 58 ~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~~~~~vpgsfy~~l--~ 135 (359)
..||+|+|||.|.+-..+. +. .+++.+--++-. ..+.+.+.. -+..+-|+-.+-| |
T Consensus 14 gsrVLDLGCGdG~LL~~L~--------~~--------k~v~g~GvEid~---~~v~~cv~r---Gv~Viq~Dld~gL~~f 71 (193)
T PF07021_consen 14 GSRVLDLGCGDGELLAYLK--------DE--------KQVDGYGVEIDP---DNVAACVAR---GVSVIQGDLDEGLADF 71 (193)
T ss_pred CCEEEecCCCchHHHHHHH--------Hh--------cCCeEEEEecCH---HHHHHHHHc---CCCEEECCHHHhHhhC
Confidence 4899999999998544442 21 123444444322 111111110 1112234444444 8
Q ss_pred CCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceeEEEec
Q 018250 136 PKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLMVFSLI 215 (359)
Q Consensus 136 p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lvl~~~ 215 (359)
|++|+|+++-+-+||=+.+ |..+. .+-|+-|.+.+++|+
T Consensus 72 ~d~sFD~VIlsqtLQ~~~~-P~~vL----------------------------------------~EmlRVgr~~IVsFP 110 (193)
T PF07021_consen 72 PDQSFDYVILSQTLQAVRR-PDEVL----------------------------------------EEMLRVGRRAIVSFP 110 (193)
T ss_pred CCCCccEEehHhHHHhHhH-HHHHH----------------------------------------HHHHHhcCeEEEEec
Confidence 9999999999999998754 43221 234677999999986
Q ss_pred cCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCChhhhccCCcccc------CCCHHHHHHHHHhCCceeEeEEEEee
Q 018250 216 TGPSGIPFADTVQGATYNFLGSCLWDLAKMGVISEEKARTFNVPAY------FPYVEELESLIQRNGHFAMERMQQLD 287 (359)
Q Consensus 216 g~~~~~~~~~~~~~~~~~~l~~al~~lv~eGli~~e~~d~f~~P~y------~ps~~E~~~~i~~~G~F~i~~le~~~ 287 (359)
.-+ .|. .-..|.-.|..+..+ .+..+|| +-|..++++..++.| ++|++-..+.
T Consensus 111 NFg------------~W~----~R~~l~~~GrmPvt~--~lPy~WYdTPNih~~Ti~DFe~lc~~~~-i~I~~~~~~~ 169 (193)
T PF07021_consen 111 NFG------------HWR----NRLQLLLRGRMPVTK--ALPYEWYDTPNIHLCTIKDFEDLCRELG-IRIEERVFLD 169 (193)
T ss_pred ChH------------HHH----HHHHHHhcCCCCCCC--CCCCcccCCCCcccccHHHHHHHHHHCC-CEEEEEEEEc
Confidence 322 122 112344456665543 2334444 469999999999999 9987776664
No 96
>PRK14968 putative methyltransferase; Provisional
Probab=97.73 E-value=0.00029 Score=62.32 Aligned_cols=122 Identities=11% Similarity=0.022 Sum_probs=67.7
Q ss_pred ceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCCCccc---ccccCcccccCC
Q 018250 58 TVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPPRKYY---AAGVPGSFHGRL 134 (359)
Q Consensus 58 ~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~~---~~~vpgsfy~~l 134 (359)
..+|+|+|||+|..+..+.. + ..+++..|...+.....-+.+.....- +..+.+++.+.
T Consensus 24 ~~~vLd~G~G~G~~~~~l~~--------~---------~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~- 85 (188)
T PRK14968 24 GDRVLEVGTGSGIVAIVAAK--------N---------GKKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEP- 85 (188)
T ss_pred CCEEEEEccccCHHHHHHHh--------h---------cceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEecccccc-
Confidence 35899999999998887742 1 137888888776655443332210000 11223455554
Q ss_pred CCCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceeEEEe
Q 018250 135 FPKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLMVFSL 214 (359)
Q Consensus 135 ~p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lvl~~ 214 (359)
++++++|+++++..+.+-. |..... ..++. ....+.. ....+..|++.-.+-|+|||.+++..
T Consensus 86 ~~~~~~d~vi~n~p~~~~~--~~~~~~---~~~~~--~~~~~~~----------~~~~~~~~i~~~~~~Lk~gG~~~~~~ 148 (188)
T PRK14968 86 FRGDKFDVILFNPPYLPTE--EEEEWD---DWLNY--ALSGGKD----------GREVIDRFLDEVGRYLKPGGRILLLQ 148 (188)
T ss_pred ccccCceEEEECCCcCCCC--chhhhh---hhhhh--hhccCcC----------hHHHHHHHHHHHHHhcCCCeEEEEEE
Confidence 4556899999876654311 111000 00000 0000000 01235678888889999999998876
No 97
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=97.72 E-value=2.3e-05 Score=79.55 Aligned_cols=105 Identities=23% Similarity=0.291 Sum_probs=59.5
Q ss_pred CcceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHH--HhCCCCcccccccCcccccC
Q 018250 56 SYTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLF--RTLPPRKYYAAGVPGSFHGR 133 (359)
Q Consensus 56 ~~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf--~~l~~~~~~~~~vpgsfy~~ 133 (359)
....+++|+|||+|..+..+++.=| ..+.+-.+|--. .+.++. +-+| -..++.|+- ..
T Consensus 116 g~iR~~LDvGcG~aSF~a~l~~r~V--------------~t~s~a~~d~~~-~qvqfaleRGvp----a~~~~~~s~-rL 175 (506)
T PF03141_consen 116 GGIRTALDVGCGVASFGAYLLERNV--------------TTMSFAPNDEHE-AQVQFALERGVP----AMIGVLGSQ-RL 175 (506)
T ss_pred CceEEEEeccceeehhHHHHhhCCc--------------eEEEcccccCCc-hhhhhhhhcCcc----hhhhhhccc-cc
Confidence 4456679999999999988853211 111222222221 111111 1122 011122222 44
Q ss_pred CCCCCceeEEEecCccc-ccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceeEE
Q 018250 134 LFPKSTLHVVNSFNAMH-WLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLMVF 212 (359)
Q Consensus 134 l~p~~s~d~~~S~~alH-WLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lvl 212 (359)
+||++++|++||+-|+- |.+.-- + +|----+-|+|||.+++
T Consensus 176 Pfp~~~fDmvHcsrc~i~W~~~~g---------------~-----------------------~l~evdRvLRpGGyfv~ 217 (506)
T PF03141_consen 176 PFPSNAFDMVHCSRCLIPWHPNDG---------------F-----------------------LLFEVDRVLRPGGYFVL 217 (506)
T ss_pred cCCccchhhhhcccccccchhccc---------------c-----------------------eeehhhhhhccCceEEe
Confidence 49999999999999986 754321 1 22234578999999999
Q ss_pred EeccCC
Q 018250 213 SLITGP 218 (359)
Q Consensus 213 ~~~g~~ 218 (359)
+-.-..
T Consensus 218 S~ppv~ 223 (506)
T PF03141_consen 218 SGPPVY 223 (506)
T ss_pred cCCccc
Confidence 887544
No 98
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=97.70 E-value=0.00014 Score=70.57 Aligned_cols=122 Identities=15% Similarity=0.134 Sum_probs=68.0
Q ss_pred eEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCCCcc--cccccCcccccCCCC
Q 018250 59 VRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPPRKY--YAAGVPGSFHGRLFP 136 (359)
Q Consensus 59 ~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~--~~~~vpgsfy~~l~p 136 (359)
.+|+|+|||+|..++.++ +. .|..+++..|+........-++...... -+..+-+++.+. +|
T Consensus 135 ~~VLDlG~GsG~iai~la--------~~-------~p~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~-l~ 198 (307)
T PRK11805 135 TRILDLCTGSGCIAIACA--------YA-------FPDAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFAA-LP 198 (307)
T ss_pred CEEEEEechhhHHHHHHH--------HH-------CCCCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhhh-CC
Confidence 689999999999988874 22 2457899999976555444333321000 012223465543 46
Q ss_pred CCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHH----HHH-H-HHHHHHHHHHHHHHHHhhccCcee
Q 018250 137 KSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVH----ETF-Q-AQFRSDFESILNARAEELVPGGLM 210 (359)
Q Consensus 137 ~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~----~~y-~-~Q~~~D~~~fL~~Ra~EL~pGG~l 210 (359)
++++|+++|+ |+-+...... ..++++. .|. . +..-.....+++.-.+-|+|||++
T Consensus 199 ~~~fDlIvsN---------PPyi~~~~~~----------~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l 259 (307)
T PRK11805 199 GRRYDLIVSN---------PPYVDAEDMA----------DLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVL 259 (307)
T ss_pred CCCccEEEEC---------CCCCCccchh----------hcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEE
Confidence 6789999996 3222110000 0000000 000 0 001123445888888889999999
Q ss_pred EEEec
Q 018250 211 VFSLI 215 (359)
Q Consensus 211 vl~~~ 215 (359)
++.+.
T Consensus 260 ~~E~g 264 (307)
T PRK11805 260 VVEVG 264 (307)
T ss_pred EEEEC
Confidence 98764
No 99
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=97.69 E-value=0.00016 Score=65.98 Aligned_cols=79 Identities=11% Similarity=-0.021 Sum_probs=44.7
Q ss_pred cceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCCCcc-cccccCcccccCCC
Q 018250 57 YTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPPRKY-YAAGVPGSFHGRLF 135 (359)
Q Consensus 57 ~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~-~~~~vpgsfy~~l~ 135 (359)
...+|+|+|||+|..|..+.. .. .+++.-|...+.....-+.+....+ -+.-+.|++.+.+.
T Consensus 78 ~~~~VLeiG~GsG~~t~~la~--------~~---------~~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~ 140 (212)
T PRK00312 78 PGDRVLEIGTGSGYQAAVLAH--------LV---------RRVFSVERIKTLQWEAKRRLKQLGLHNVSVRHGDGWKGWP 140 (212)
T ss_pred CCCEEEEECCCccHHHHHHHH--------Hh---------CEEEEEeCCHHHHHHHHHHHHHCCCCceEEEECCcccCCC
Confidence 457999999999999985531 11 1466666654443333222211000 02222345444344
Q ss_pred CCCceeEEEecCccccc
Q 018250 136 PKSTLHVVNSFNAMHWL 152 (359)
Q Consensus 136 p~~s~d~~~S~~alHWL 152 (359)
+.+++|++++..+++++
T Consensus 141 ~~~~fD~I~~~~~~~~~ 157 (212)
T PRK00312 141 AYAPFDRILVTAAAPEI 157 (212)
T ss_pred cCCCcCEEEEccCchhh
Confidence 45889999998877663
No 100
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=97.64 E-value=0.00016 Score=65.84 Aligned_cols=160 Identities=16% Similarity=0.181 Sum_probs=96.9
Q ss_pred CcceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCC----C-cccccccCccc
Q 018250 56 SYTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPP----R-KYYAAGVPGSF 130 (359)
Q Consensus 56 ~~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~----~-~~~~~~vpgsf 130 (359)
....-++++|||||+|=-- |+. .|.-.|.+-|=..|+=.-+-++..+ + .+|+.|-+.+.
T Consensus 75 ~~K~~vLEvgcGtG~Nfkf------------y~~----~p~~svt~lDpn~~mee~~~ks~~E~k~~~~~~fvva~ge~l 138 (252)
T KOG4300|consen 75 SGKGDVLEVGCGTGANFKF------------YPW----KPINSVTCLDPNEKMEEIADKSAAEKKPLQVERFVVADGENL 138 (252)
T ss_pred cCccceEEecccCCCCccc------------ccC----CCCceEEEeCCcHHHHHHHHHHHhhccCcceEEEEeechhcC
Confidence 3456789999999998432 221 2556788888776654434333322 1 35777765333
Q ss_pred ccCCCCCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCcee
Q 018250 131 HGRLFPKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLM 210 (359)
Q Consensus 131 y~~l~p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~l 210 (359)
- | +|+.|+|.|++..+|- |. +|-..-|+--.+-|+|||++
T Consensus 139 ~-~-l~d~s~DtVV~TlvLC--Sv------------------------------------e~~~k~L~e~~rlLRpgG~i 178 (252)
T KOG4300|consen 139 P-Q-LADGSYDTVVCTLVLC--SV------------------------------------EDPVKQLNEVRRLLRPGGRI 178 (252)
T ss_pred c-c-cccCCeeeEEEEEEEe--cc------------------------------------CCHHHHHHHHHHhcCCCcEE
Confidence 1 1 4999999999977663 22 12233566677899999999
Q ss_pred EEEeccCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCChhhhccCCccccCCCHHHHHHHHHhCCceeEeEEEEeecCC
Q 018250 211 VFSLITGPSGIPFADTVQGATYNFLGSCLWDLAKMGVISEEKARTFNVPAYFPYVEELESLIQRNGHFAMERMQQLDQPM 290 (359)
Q Consensus 211 vl~~~g~~~~~~~~~~~~~~~~~~l~~al~~lv~eGli~~e~~d~f~~P~y~ps~~E~~~~i~~~G~F~i~~le~~~~~~ 290 (359)
++.--|++.-. + ...+++...+-+..+...|. .=.-|.-+.|+++. |++...+.+..++
T Consensus 179 ifiEHva~~y~----~-~n~i~q~v~ep~~~~~~dGC---------------~ltrd~~e~Leda~-f~~~~~kr~~~~t 237 (252)
T KOG4300|consen 179 IFIEHVAGEYG----F-WNRILQQVAEPLWHLESDGC---------------VLTRDTGELLEDAE-FSIDSCKRFNFGT 237 (252)
T ss_pred EEEecccccch----H-HHHHHHHHhchhhheeccce---------------EEehhHHHHhhhcc-cccchhhcccCCc
Confidence 99988877521 0 11123332333233333442 11234555677776 9998888887666
Q ss_pred CC
Q 018250 291 RH 292 (359)
Q Consensus 291 ~~ 292 (359)
.|
T Consensus 238 tw 239 (252)
T KOG4300|consen 238 TW 239 (252)
T ss_pred eE
Confidence 65
No 101
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=97.62 E-value=0.00016 Score=68.03 Aligned_cols=41 Identities=15% Similarity=0.109 Sum_probs=27.3
Q ss_pred cceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHH
Q 018250 57 YTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLF 113 (359)
Q Consensus 57 ~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf 113 (359)
...+|+|+|||+|..++.+. +. .+ ..++..|.........-
T Consensus 119 ~~~~VLDiGcGsG~l~i~~~--------~~-------g~-~~v~giDis~~~l~~A~ 159 (250)
T PRK00517 119 PGKTVLDVGCGSGILAIAAA--------KL-------GA-KKVLAVDIDPQAVEAAR 159 (250)
T ss_pred CCCEEEEeCCcHHHHHHHHH--------Hc-------CC-CeEEEEECCHHHHHHHH
Confidence 35789999999998776552 21 11 25888898765554433
No 102
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=97.61 E-value=0.00021 Score=58.38 Aligned_cols=108 Identities=21% Similarity=0.269 Sum_probs=62.1
Q ss_pred eEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCC----Cc-ccccccCcccccC
Q 018250 59 VRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPP----RK-YYAAGVPGSFHGR 133 (359)
Q Consensus 59 ~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~----~~-~~~~~vpgsfy~~ 133 (359)
.+|+|+|||+|..++.++. .. ..+++..|+-.---......++. .+ -++. +++...
T Consensus 2 ~~vlD~~~G~G~~~~~~~~--------~~--------~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~---~D~~~~ 62 (117)
T PF13659_consen 2 DRVLDPGCGSGTFLLAALR--------RG--------AARVTGVDIDPEAVELARRNLPRNGLDDRVEVIV---GDARDL 62 (117)
T ss_dssp EEEEEETSTTCHHHHHHHH--------HC--------TCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEE---SHHHHH
T ss_pred CEEEEcCcchHHHHHHHHH--------HC--------CCeEEEEEECHHHHHHHHHHHHHccCCceEEEEE---Cchhhc
Confidence 5899999999998888752 21 24777777754111111222221 11 1222 233333
Q ss_pred --CCCCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceeE
Q 018250 134 --LFPKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLMV 211 (359)
Q Consensus 134 --l~p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lv 211 (359)
.++++++|+++++--.+.....+. .-.++...|++.-.+-|+|||.++
T Consensus 63 ~~~~~~~~~D~Iv~npP~~~~~~~~~------------------------------~~~~~~~~~~~~~~~~L~~gG~~~ 112 (117)
T PF13659_consen 63 PEPLPDGKFDLIVTNPPYGPRSGDKA------------------------------ALRRLYSRFLEAAARLLKPGGVLV 112 (117)
T ss_dssp HHTCTTT-EEEEEE--STTSBTT----------------------------------GGCHHHHHHHHHHHHEEEEEEEE
T ss_pred hhhccCceeEEEEECCCCccccccch------------------------------hhHHHHHHHHHHHHHHcCCCeEEE
Confidence 378899999999544432111000 011256678999999999999999
Q ss_pred EEec
Q 018250 212 FSLI 215 (359)
Q Consensus 212 l~~~ 215 (359)
+.+.
T Consensus 113 ~~~~ 116 (117)
T PF13659_consen 113 FITP 116 (117)
T ss_dssp EEEE
T ss_pred EEeC
Confidence 9874
No 103
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=97.52 E-value=9.9e-05 Score=70.96 Aligned_cols=101 Identities=12% Similarity=0.033 Sum_probs=60.3
Q ss_pred ceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCCCcc--cccccCcccccCCC
Q 018250 58 TVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPPRKY--YAAGVPGSFHGRLF 135 (359)
Q Consensus 58 ~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~--~~~~vpgsfy~~l~ 135 (359)
..+|+|+|||+|..++.+. +. ..-+++..|+........-++.....+ -+....++ ...+
T Consensus 160 g~~VLDvGcGsG~lai~aa--------~~--------g~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~--~~~~ 221 (288)
T TIGR00406 160 DKNVIDVGCGSGILSIAAL--------KL--------GAAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIY--LEQP 221 (288)
T ss_pred CCEEEEeCCChhHHHHHHH--------Hc--------CCCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEecc--cccc
Confidence 3789999999999887652 21 113789999887654443333221100 00000011 1224
Q ss_pred CCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceeEEEec
Q 018250 136 PKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLMVFSLI 215 (359)
Q Consensus 136 p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lvl~~~ 215 (359)
+++++|+++++...++ +..++..-.+-|+|||+++++.+
T Consensus 222 ~~~~fDlVvan~~~~~-----------------------------------------l~~ll~~~~~~LkpgG~li~sgi 260 (288)
T TIGR00406 222 IEGKADVIVANILAEV-----------------------------------------IKELYPQFSRLVKPGGWLILSGI 260 (288)
T ss_pred cCCCceEEEEecCHHH-----------------------------------------HHHHHHHHHHHcCCCcEEEEEeC
Confidence 5679999999754333 12355556788999999999876
Q ss_pred cC
Q 018250 216 TG 217 (359)
Q Consensus 216 g~ 217 (359)
..
T Consensus 261 ~~ 262 (288)
T TIGR00406 261 LE 262 (288)
T ss_pred cH
Confidence 43
No 104
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=97.40 E-value=0.00047 Score=66.12 Aligned_cols=128 Identities=13% Similarity=0.118 Sum_probs=68.5
Q ss_pred eEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCCCcc--cccccCcccccCCCC
Q 018250 59 VRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPPRKY--YAAGVPGSFHGRLFP 136 (359)
Q Consensus 59 ~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~--~~~~vpgsfy~~l~p 136 (359)
.+|+|+|||+|..++.++ .. .|..+++..|+........-++...... -+.-+.|++++. +|
T Consensus 116 ~~vLDlG~GsG~i~l~la--------~~-------~~~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~~-~~ 179 (284)
T TIGR00536 116 LHILDLGTGSGCIALALA--------YE-------FPNAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFEP-LA 179 (284)
T ss_pred CEEEEEeccHhHHHHHHH--------HH-------CCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhcc-Cc
Confidence 689999999999888874 22 2356899999876554433333211000 011223465553 45
Q ss_pred CCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceeEEEec
Q 018250 137 KSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLMVFSLI 215 (359)
Q Consensus 137 ~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lvl~~~ 215 (359)
++++|+++|+ |+-+........ .. +. ...|....-. -+-...+...+++.-.+-|+|||.+++...
T Consensus 180 ~~~fDlIvsN---------PPyi~~~~~~~~-~~-~~-~~eP~~AL~g-g~dgl~~~~~ii~~a~~~L~~gG~l~~e~g 245 (284)
T TIGR00536 180 GQKIDIIVSN---------PPYIDEEDLADL-PN-VV-RFEPLLALVG-GDDGLNILRQIIELAPDYLKPNGFLVCEIG 245 (284)
T ss_pred CCCccEEEEC---------CCCCCcchhhcC-Cc-cc-ccCcHHHhcC-CCcHHHHHHHHHHHHHHhccCCCEEEEEEC
Confidence 5689999995 222211100000 00 00 0000000000 001123566788888889999999998885
No 105
>PLN03075 nicotianamine synthase; Provisional
Probab=97.38 E-value=0.001 Score=64.20 Aligned_cols=104 Identities=14% Similarity=0.197 Sum_probs=63.3
Q ss_pred cceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCC-----C-cccccccCccc
Q 018250 57 YTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPP-----R-KYYAAGVPGSF 130 (359)
Q Consensus 57 ~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~-----~-~~~~~~vpgsf 130 (359)
.+-+|||+|||.|+.|..++. +.. .|.-+++--|.-.-.-+..-+.... + --|..+ +-
T Consensus 123 ~p~~VldIGcGpgpltaiila------a~~-------~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~---Da 186 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLA------KHH-------LPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTA---DV 186 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHH------Hhc-------CCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEEC---ch
Confidence 568999999999988777642 112 3556788888776332222222211 1 224333 22
Q ss_pred ccCCC-CCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCce
Q 018250 131 HGRLF-PKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGL 209 (359)
Q Consensus 131 y~~l~-p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~ 209 (359)
-+ +. +.+.+|+||+. ++|-.++.+ =...|+.-++-|+|||.
T Consensus 187 ~~-~~~~l~~FDlVF~~-ALi~~dk~~------------------------------------k~~vL~~l~~~LkPGG~ 228 (296)
T PLN03075 187 MD-VTESLKEYDVVFLA-ALVGMDKEE------------------------------------KVKVIEHLGKHMAPGAL 228 (296)
T ss_pred hh-cccccCCcCEEEEe-ccccccccc------------------------------------HHHHHHHHHHhcCCCcE
Confidence 12 22 24789999999 666543211 12356677899999999
Q ss_pred eEEEe
Q 018250 210 MVFSL 214 (359)
Q Consensus 210 lvl~~ 214 (359)
+++-+
T Consensus 229 Lvlr~ 233 (296)
T PLN03075 229 LMLRS 233 (296)
T ss_pred EEEec
Confidence 99887
No 106
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=97.32 E-value=0.00097 Score=62.95 Aligned_cols=123 Identities=15% Similarity=0.184 Sum_probs=67.7
Q ss_pred cceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCC---CCc-ccccccCccccc
Q 018250 57 YTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLP---PRK-YYAAGVPGSFHG 132 (359)
Q Consensus 57 ~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~---~~~-~~~~~vpgsfy~ 132 (359)
...+|+|+|||+|..++.++ +. .|..+++..|.........-+... ... -++. +++..
T Consensus 108 ~~~~vLDiG~GsG~~~~~la--------~~-------~~~~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~---~d~~~ 169 (275)
T PRK09328 108 EPLRVLDLGTGSGAIALALA--------KE-------RPDAEVTAVDISPEALAVARRNAKHGLGARVEFLQ---GDWFE 169 (275)
T ss_pred CCCEEEEEcCcHHHHHHHHH--------HH-------CCCCEEEEEECCHHHHHHHHHHHHhCCCCcEEEEE---ccccC
Confidence 35689999999999888774 22 234689999987765544443322 111 1222 24433
Q ss_pred CCCCCCceeEEEecCccc---ccCCCCcccccccccccCCCceeecCCCHHHHHHHH-HHHHHHHHHHHHHHHHhhccCc
Q 018250 133 RLFPKSTLHVVNSFNAMH---WLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQ-AQFRSDFESILNARAEELVPGG 208 (359)
Q Consensus 133 ~l~p~~s~d~~~S~~alH---WLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~-~Q~~~D~~~fL~~Ra~EL~pGG 208 (359)
.++++++|+++|+--.. -...+++.+.+.. |.. ..+. .....++..|++.-.+-|+|||
T Consensus 170 -~~~~~~fD~Iv~npPy~~~~~~~~~~~~v~~~e--------------p~~--al~~g~~g~~~~~~~~~~~~~~Lk~gG 232 (275)
T PRK09328 170 -PLPGGRFDLIVSNPPYIPEADIHLLQPEVRDHE--------------PHL--ALFGGEDGLDFYRRIIEQAPRYLKPGG 232 (275)
T ss_pred -cCCCCceeEEEECCCcCCcchhhhCCchhhhcC--------------Cch--hhcCCCCHHHHHHHHHHHHHHhcccCC
Confidence 23468999999952210 0000111110000 000 0000 1123456778888889999999
Q ss_pred eeEEEe
Q 018250 209 LMVFSL 214 (359)
Q Consensus 209 ~lvl~~ 214 (359)
++++..
T Consensus 233 ~l~~e~ 238 (275)
T PRK09328 233 WLLLEI 238 (275)
T ss_pred EEEEEE
Confidence 999965
No 107
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=97.32 E-value=0.0011 Score=64.78 Aligned_cols=113 Identities=15% Similarity=0.065 Sum_probs=67.5
Q ss_pred ceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCC---CcccccccCcccccCC
Q 018250 58 TVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPP---RKYYAAGVPGSFHGRL 134 (359)
Q Consensus 58 ~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~---~~~~~~~vpgsfy~~l 134 (359)
..+|+|.|||||..++... . ....++..|+-..+....-.++.. .. +.-+-+++.+..
T Consensus 183 g~~vLDp~cGtG~~lieaa--------~---------~~~~v~g~Di~~~~~~~a~~nl~~~g~~~--i~~~~~D~~~l~ 243 (329)
T TIGR01177 183 GDRVLDPFCGTGGFLIEAG--------L---------MGAKVIGCDIDWKMVAGARINLEHYGIED--FFVKRGDATKLP 243 (329)
T ss_pred cCEEEECCCCCCHHHHHHH--------H---------hCCeEEEEcCCHHHHHHHHHHHHHhCCCC--CeEEecchhcCC
Confidence 4689999999998655432 1 124789999877665544333321 11 112235666555
Q ss_pred CCCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceeEEEe
Q 018250 135 FPKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLMVFSL 214 (359)
Q Consensus 135 ~p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lvl~~ 214 (359)
++++++|+++++--..--+..+ + . ....-...+|+.-++-|+|||++++.+
T Consensus 244 ~~~~~~D~Iv~dPPyg~~~~~~-------------~---------~-------~~~~l~~~~l~~~~r~Lk~gG~lv~~~ 294 (329)
T TIGR01177 244 LSSESVDAIATDPPYGRSTTAA-------------G---------D-------GLESLYERSLEEFHEVLKSEGWIVYAV 294 (329)
T ss_pred cccCCCCEEEECCCCcCccccc-------------C---------C-------chHHHHHHHHHHHHHHccCCcEEEEEE
Confidence 6788999999953221100000 0 0 011124567888889999999999998
Q ss_pred ccCC
Q 018250 215 ITGP 218 (359)
Q Consensus 215 ~g~~ 218 (359)
....
T Consensus 295 ~~~~ 298 (329)
T TIGR01177 295 PTRI 298 (329)
T ss_pred cCCC
Confidence 6543
No 108
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=97.31 E-value=0.0011 Score=67.18 Aligned_cols=124 Identities=19% Similarity=0.189 Sum_probs=71.0
Q ss_pred ceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCCCcccccccCccccc--CCC
Q 018250 58 TVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPPRKYYAAGVPGSFHG--RLF 135 (359)
Q Consensus 58 ~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~~~~~vpgsfy~--~l~ 135 (359)
..+|+|+|||+|.-|+.++ +.. +...++..|+.......+-+.+.....-+..+.++..+ ..+
T Consensus 245 g~~VLDlgaG~G~~t~~la--------~~~-------~~~~v~a~D~s~~~l~~~~~n~~~~g~~~~~~~~D~~~~~~~~ 309 (427)
T PRK10901 245 GERVLDACAAPGGKTAHIL--------ELA-------PQAQVVALDIDAQRLERVRENLQRLGLKATVIVGDARDPAQWW 309 (427)
T ss_pred CCEEEEeCCCCChHHHHHH--------HHc-------CCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEcCcccchhhc
Confidence 4689999999999998775 222 12578999998766665544443210001112234432 224
Q ss_pred CCCceeEEEecC---cccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceeEE
Q 018250 136 PKSTLHVVNSFN---AMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLMVF 212 (359)
Q Consensus 136 p~~s~d~~~S~~---alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lvl 212 (359)
+++++|.|++.. ...-+.+-|+.. | .. .++-. ..+......+|..-++-|+|||+|+.
T Consensus 310 ~~~~fD~Vl~D~Pcs~~G~~~~~p~~~-------~-------~~-~~~~l----~~l~~~q~~iL~~a~~~LkpGG~lvy 370 (427)
T PRK10901 310 DGQPFDRILLDAPCSATGVIRRHPDIK-------W-------LR-RPEDI----AALAALQSEILDALWPLLKPGGTLLY 370 (427)
T ss_pred ccCCCCEEEECCCCCcccccccCcccc-------c-------cC-CHHHH----HHHHHHHHHHHHHHHHhcCCCCEEEE
Confidence 568899999632 111112222211 0 00 11111 12334556788888899999999998
Q ss_pred Eec
Q 018250 213 SLI 215 (359)
Q Consensus 213 ~~~ 215 (359)
++.
T Consensus 371 stc 373 (427)
T PRK10901 371 ATC 373 (427)
T ss_pred EeC
Confidence 875
No 109
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=97.31 E-value=0.00054 Score=63.34 Aligned_cols=139 Identities=22% Similarity=0.295 Sum_probs=84.9
Q ss_pred ceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCCCcc---cccccCcccccCC
Q 018250 58 TVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPPRKY---YAAGVPGSFHGRL 134 (359)
Q Consensus 58 ~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~---~~~~vpgsfy~~l 134 (359)
..+++|||||||-....+ +... -.+.-.|+..||.... -.+.-| +.+- --.| .+.
T Consensus 126 F~~~lDLGCGTGL~G~~l--------R~~a---------~~ltGvDiS~nMl~kA---~eKg~YD~L~~Ae-a~~F-l~~ 183 (287)
T COG4976 126 FRRMLDLGCGTGLTGEAL--------RDMA---------DRLTGVDISENMLAKA---HEKGLYDTLYVAE-AVLF-LED 183 (287)
T ss_pred cceeeecccCcCcccHhH--------HHHH---------hhccCCchhHHHHHHH---HhccchHHHHHHH-HHHH-hhh
Confidence 678999999999988876 2221 1344568888885332 111111 1110 0012 222
Q ss_pred CCCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceeEEEe
Q 018250 135 FPKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLMVFSL 214 (359)
Q Consensus 135 ~p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lvl~~ 214 (359)
.-+..+|+|.+.-.|-+|- ++..++-.-+.-|+|||.|.|+.
T Consensus 184 ~~~er~DLi~AaDVl~YlG--------------------------------------~Le~~~~~aa~~L~~gGlfaFSv 225 (287)
T COG4976 184 LTQERFDLIVAADVLPYLG--------------------------------------ALEGLFAGAAGLLAPGGLFAFSV 225 (287)
T ss_pred ccCCcccchhhhhHHHhhc--------------------------------------chhhHHHHHHHhcCCCceEEEEe
Confidence 3356778888766666643 34456777899999999999987
Q ss_pred ccCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCChhhhccCCccccCCCHHHHHHHHHhCCceeEeEEEEee
Q 018250 215 ITGPSGIPFADTVQGATYNFLGSCLWDLAKMGVISEEKARTFNVPAYFPYVEELESLIQRNGHFAMERMQQLD 287 (359)
Q Consensus 215 ~g~~~~~~~~~~~~~~~~~~l~~al~~lv~eGli~~e~~d~f~~P~y~ps~~E~~~~i~~~G~F~i~~le~~~ 287 (359)
=.-++.. +. .+....+ |..+..=++..++..| |++..++...
T Consensus 226 E~l~~~~-------~f---~l~ps~R--------------------yAH~~~YVr~~l~~~G-l~~i~~~~tt 267 (287)
T COG4976 226 ETLPDDG-------GF---VLGPSQR--------------------YAHSESYVRALLAASG-LEVIAIEDTT 267 (287)
T ss_pred cccCCCC-------Ce---ecchhhh--------------------hccchHHHHHHHHhcC-ceEEEeeccc
Confidence 4222210 00 1111111 7778888999999999 9998888763
No 110
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=97.29 E-value=0.00053 Score=71.09 Aligned_cols=128 Identities=12% Similarity=0.132 Sum_probs=69.4
Q ss_pred ceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCCCcc--cccccCcccccCCC
Q 018250 58 TVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPPRKY--YAAGVPGSFHGRLF 135 (359)
Q Consensus 58 ~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~--~~~~vpgsfy~~l~ 135 (359)
..+|+|+|||+|..++.++ +. .|..+++..|+........-++...... -+.-+-+++.+. +
T Consensus 139 ~~~VLDlG~GsG~iai~la--------~~-------~p~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~~-~ 202 (506)
T PRK01544 139 FLNILELGTGSGCIAISLL--------CE-------LPNANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFEN-I 202 (506)
T ss_pred CCEEEEccCchhHHHHHHH--------HH-------CCCCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhhh-C
Confidence 4689999999999998774 22 2457899999976444333322211000 122233565543 4
Q ss_pred CCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHH-HHHHHHHHHHHHHHHHhhccCceeEEEe
Q 018250 136 PKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQ-AQFRSDFESILNARAEELVPGGLMVFSL 214 (359)
Q Consensus 136 p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~-~Q~~~D~~~fL~~Ra~EL~pGG~lvl~~ 214 (359)
+++++|+++|+--....+..+....+ + ..-.|. ...+. +.....+..+++.-.+-|+|||.+++..
T Consensus 203 ~~~~fDlIvsNPPYi~~~~~~~l~~~----------v--~~~EP~-~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lEi 269 (506)
T PRK01544 203 EKQKFDFIVSNPPYISHSEKSEMAIE----------T--INYEPS-IALFAEEDGLQAYFIIAENAKQFLKPNGKIILEI 269 (506)
T ss_pred cCCCccEEEECCCCCCchhhhhcCch----------h--hccCcH-HHhcCCccHHHHHHHHHHHHHHhccCCCEEEEEE
Confidence 66789999996433332221110000 0 000000 00000 0122345568888888999999999875
No 111
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=97.29 E-value=0.00065 Score=62.45 Aligned_cols=141 Identities=20% Similarity=0.289 Sum_probs=78.6
Q ss_pred CcceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCc-eEEecCCCCCchHHHHH-hCCC-----CcccccccCc
Q 018250 56 SYTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDF-QVFFNDHTENDFNTLFR-TLPP-----RKYYAAGVPG 128 (359)
Q Consensus 56 ~~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~-~v~~nDLp~NDFn~lf~-~l~~-----~~~~~~~vpg 128 (359)
....+.+|.|||.|+-|-.++. |-+ +|-+.|... .|-.-.+ .+.+ ..+|.+|+
T Consensus 54 ~~~~~alDcGAGIGRVTk~lLl-----------------~~f~~VDlVEp~~-~Fl~~a~~~l~~~~~~v~~~~~~gL-- 113 (218)
T PF05891_consen 54 PKFNRALDCGAGIGRVTKGLLL-----------------PVFDEVDLVEPVE-KFLEQAKEYLGKDNPRVGEFYCVGL-- 113 (218)
T ss_dssp ---SEEEEET-TTTHHHHHTCC-----------------CC-SEEEEEES-H-HHHHHHHHHTCCGGCCEEEEEES-G--
T ss_pred CCcceEEecccccchhHHHHHH-----------------HhcCEeEEeccCH-HHHHHHHHHhcccCCCcceEEecCH--
Confidence 4578999999999999876631 111 222223222 2322222 1221 24555554
Q ss_pred ccccCCCCC-CceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 018250 129 SFHGRLFPK-STLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPG 207 (359)
Q Consensus 129 sfy~~l~p~-~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pG 207 (359)
+..-|+ +..|+||.-||+-.|.+ .|+..||+...+.|+||
T Consensus 114 ---Q~f~P~~~~YDlIW~QW~lghLTD------------------------------------~dlv~fL~RCk~~L~~~ 154 (218)
T PF05891_consen 114 ---QDFTPEEGKYDLIWIQWCLGHLTD------------------------------------EDLVAFLKRCKQALKPN 154 (218)
T ss_dssp ---GG----TT-EEEEEEES-GGGS-H------------------------------------HHHHHHHHHHHHHEEEE
T ss_pred ---hhccCCCCcEeEEEehHhhccCCH------------------------------------HHHHHHHHHHHHhCcCC
Confidence 223364 79999999877777653 48999999999999999
Q ss_pred ceeEEEeccCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCChhhhccCCccccCCCHHHHHHHHHhCCceeEeEEEEe
Q 018250 208 GLMVFSLITGPSGIPFADTVQGATYNFLGSCLWDLAKMGVISEEKARTFNVPAYFPYVEELESLIQRNGHFAMERMQQL 286 (359)
Q Consensus 208 G~lvl~~~g~~~~~~~~~~~~~~~~~~l~~al~~lv~eGli~~e~~d~f~~P~y~ps~~E~~~~i~~~G~F~i~~le~~ 286 (359)
|.+++==-...++.. ..+++ | -...||.+.++.+++++| +++.+-+..
T Consensus 155 G~IvvKEN~~~~~~~------------------------~~D~~--D----sSvTRs~~~~~~lF~~AG-l~~v~~~~Q 202 (218)
T PF05891_consen 155 GVIVVKENVSSSGFD------------------------EFDEE--D----SSVTRSDEHFRELFKQAG-LRLVKEEKQ 202 (218)
T ss_dssp EEEEEEEEEESSSEE------------------------EEETT--T----TEEEEEHHHHHHHHHHCT--EEEEEEE-
T ss_pred cEEEEEecCCCCCCc------------------------ccCCc--c----CeeecCHHHHHHHHHHcC-CEEEEeccc
Confidence 998874321111100 00000 1 125688999999999999 888766654
No 112
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=97.28 E-value=0.00097 Score=67.20 Aligned_cols=126 Identities=16% Similarity=0.174 Sum_probs=68.4
Q ss_pred eEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCCCcccccccCcccccCCCC-C
Q 018250 59 VRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPPRKYYAAGVPGSFHGRLFP-K 137 (359)
Q Consensus 59 ~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~~~~~vpgsfy~~l~p-~ 137 (359)
.+|+|+|||+|..++.+. +. .|..+++..|+........-++......-+.-+-+++.+..+| .
T Consensus 253 ~rVLDLGcGSG~IaiaLA--------~~-------~p~a~VtAVDiS~~ALe~AreNa~~~g~rV~fi~gDl~e~~l~~~ 317 (423)
T PRK14966 253 GRVWDLGTGSGAVAVTVA--------LE-------RPDAFVRASDISPPALETARKNAADLGARVEFAHGSWFDTDMPSE 317 (423)
T ss_pred CEEEEEeChhhHHHHHHH--------Hh-------CCCCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEcchhccccccC
Confidence 489999999999998874 22 2456899999976555444333321111112223566554444 4
Q ss_pred CceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHH--HHHHHHHHHHHHHHHhhccCceeEEEe
Q 018250 138 STLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQA--QFRSDFESILNARAEELVPGGLMVFSL 214 (359)
Q Consensus 138 ~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~--Q~~~D~~~fL~~Ra~EL~pGG~lvl~~ 214 (359)
+++|+++|+ |+-+.......... .+ . ..| ..|... -.-..+..+++.-.+-|+|||.+++..
T Consensus 318 ~~FDLIVSN---------PPYI~~~e~~l~~~-~v--~-~EP--~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilEi 381 (423)
T PRK14966 318 GKWDIIVSN---------PPYIENGDKHLLQG-DL--R-FEP--QIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLEH 381 (423)
T ss_pred CCccEEEEC---------CCCCCcchhhhcch-hh--h-cCH--HHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence 689999995 33322111000000 00 0 000 011110 111235567777788899999988766
No 113
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=97.27 E-value=0.0011 Score=65.00 Aligned_cols=44 Identities=20% Similarity=0.272 Sum_probs=34.0
Q ss_pred CceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceeEEEec
Q 018250 138 STLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLMVFSLI 215 (359)
Q Consensus 138 ~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lvl~~~ 215 (359)
..+|+|-+-+|||..=. .+.-.+.||+.-++-|+|||+|+.+++
T Consensus 144 ~~FDvVScQFalHY~Fe----------------------------------se~~ar~~l~Nvs~~Lk~GG~FIgT~~ 187 (331)
T PF03291_consen 144 RKFDVVSCQFALHYAFE----------------------------------SEEKARQFLKNVSSLLKPGGYFIGTTP 187 (331)
T ss_dssp S-EEEEEEES-GGGGGS----------------------------------SHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred CCcceeehHHHHHHhcC----------------------------------CHHHHHHHHHHHHHhcCCCCEEEEEec
Confidence 59999999999999321 012345799999999999999999997
No 114
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=97.26 E-value=0.0014 Score=66.40 Aligned_cols=126 Identities=19% Similarity=0.166 Sum_probs=77.1
Q ss_pred ceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCCC--cccccccCcccccCC-
Q 018250 58 TVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPPR--KYYAAGVPGSFHGRL- 134 (359)
Q Consensus 58 ~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~--~~~~~~vpgsfy~~l- 134 (359)
..+|+|+|||+|.-|..++ +.. +...++..|...+....+-+++... ..-+..+.++.....
T Consensus 239 g~~VLDlcag~G~kt~~la--------~~~-------~~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~~ 303 (426)
T TIGR00563 239 EETILDACAAPGGKTTHIL--------ELA-------PQAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPSQ 303 (426)
T ss_pred CCeEEEeCCCccHHHHHHH--------HHc-------CCCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeccccccccc
Confidence 4689999999999999885 222 1358999999887777665555421 111211233332222
Q ss_pred -CCCCceeEEEe---cCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCcee
Q 018250 135 -FPKSTLHVVNS---FNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLM 210 (359)
Q Consensus 135 -~p~~s~d~~~S---~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~l 210 (359)
.+++++|.|++ ++++.-+.+.|+... . .++.++ .+..+.-..+|..-++-|+|||+|
T Consensus 304 ~~~~~~fD~VllDaPcSg~G~~~~~p~~~~-------~-------~~~~~~-----~~l~~lQ~~lL~~a~~~LkpgG~l 364 (426)
T TIGR00563 304 WAENEQFDRILLDAPCSATGVIRRHPDIKW-------L-------RKPRDI-----AELAELQSEILDAIWPLLKTGGTL 364 (426)
T ss_pred cccccccCEEEEcCCCCCCcccccCcchhh-------c-------CCHHHH-----HHHHHHHHHHHHHHHHhcCCCcEE
Confidence 26788999997 234444444444211 0 111111 223345567888888899999999
Q ss_pred EEEeccC
Q 018250 211 VFSLITG 217 (359)
Q Consensus 211 vl~~~g~ 217 (359)
|.++..-
T Consensus 365 vystcs~ 371 (426)
T TIGR00563 365 VYATCSV 371 (426)
T ss_pred EEEeCCC
Confidence 9988644
No 115
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=97.25 E-value=0.0058 Score=59.76 Aligned_cols=150 Identities=19% Similarity=0.162 Sum_probs=98.8
Q ss_pred cceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCCCccc---ccccCcccccC
Q 018250 57 YTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPPRKYY---AAGVPGSFHGR 133 (359)
Q Consensus 57 ~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~~---~~~vpgsfy~~ 133 (359)
+.-..+|.|-|.|..+-.++ .+ .|.+..+-=|+|.=. .. ..++ +.-+.|+++.-
T Consensus 177 ~v~~avDvGgGiG~v~k~ll--------~~-------fp~ik~infdlp~v~-----~~---a~~~~~gV~~v~gdmfq~ 233 (342)
T KOG3178|consen 177 GVNVAVDVGGGIGRVLKNLL--------SK-------YPHIKGINFDLPFVL-----AA---APYLAPGVEHVAGDMFQD 233 (342)
T ss_pred cCceEEEcCCcHhHHHHHHH--------Hh-------CCCCceeecCHHHHH-----hh---hhhhcCCcceeccccccc
Confidence 46778999999999888875 23 456777777777521 11 2233 45567888888
Q ss_pred CCCCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceeEEE
Q 018250 134 LFPKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLMVFS 213 (359)
Q Consensus 134 l~p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lvl~ 213 (359)
.|++- ++|.-++||-+. | +|...||+..++-|+|||.+++.
T Consensus 234 -~P~~d--aI~mkWiLhdwt-------D-----------------------------edcvkiLknC~~sL~~~GkIiv~ 274 (342)
T KOG3178|consen 234 -TPKGD--AIWMKWILHDWT-------D-----------------------------EDCVKILKNCKKSLPPGGKIIVV 274 (342)
T ss_pred -CCCcC--eEEEEeecccCC-------h-----------------------------HHHHHHHHHHHHhCCCCCEEEEE
Confidence 88665 999988888322 1 48889999999999999998887
Q ss_pred eccCCCCCCCCC--cchhHHHHHHHHHHHHHHHcCCCChhhhccCCccccCCCHHHHHHHHHhCCceeEeEEEEe
Q 018250 214 LITGPSGIPFAD--TVQGATYNFLGSCLWDLAKMGVISEEKARTFNVPAYFPYVEELESLIQRNGHFAMERMQQL 286 (359)
Q Consensus 214 ~~g~~~~~~~~~--~~~~~~~~~l~~al~~lv~eGli~~e~~d~f~~P~y~ps~~E~~~~i~~~G~F~i~~le~~ 286 (359)
=.-.+++...++ .......+.+..+..+ -| --++..|++..+.++| |.+-.+-..
T Consensus 275 E~V~p~e~~~dd~~s~v~~~~d~lm~~~~~---~G--------------kert~~e~q~l~~~~g-F~~~~~~~~ 331 (342)
T KOG3178|consen 275 ENVTPEEDKFDDIDSSVTRDMDLLMLTQTS---GG--------------KERTLKEFQALLPEEG-FPVCMVALT 331 (342)
T ss_pred eccCCCCCCccccccceeehhHHHHHHHhc---cc--------------eeccHHHHHhcchhhc-CceeEEEec
Confidence 653332211111 0111112333333221 24 2478999999999999 988766654
No 116
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=97.21 E-value=0.0011 Score=60.04 Aligned_cols=101 Identities=21% Similarity=0.226 Sum_probs=58.6
Q ss_pred cceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCC----Cc-ccccccCcccc
Q 018250 57 YTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPP----RK-YYAAGVPGSFH 131 (359)
Q Consensus 57 ~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~----~~-~~~~~vpgsfy 131 (359)
...+|+|+|||+|..++.++ +.. .+..+|+..|+-......+-+++.. .. .++ .+++.
T Consensus 40 ~~~~vlDlG~GtG~~s~~~a--------~~~------~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~---~~d~~ 102 (198)
T PRK00377 40 KGDMILDIGCGTGSVTVEAS--------LLV------GETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLI---KGEAP 102 (198)
T ss_pred CcCEEEEeCCcCCHHHHHHH--------HHh------CCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEE---Eechh
Confidence 35689999999999998774 111 1345788888876444332222110 11 122 23333
Q ss_pred cCCC-CCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCcee
Q 018250 132 GRLF-PKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLM 210 (359)
Q Consensus 132 ~~l~-p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~l 210 (359)
+.+. .++++|.+++.... .+...+|+.-.+-|+|||++
T Consensus 103 ~~l~~~~~~~D~V~~~~~~-----------------------------------------~~~~~~l~~~~~~LkpgG~l 141 (198)
T PRK00377 103 EILFTINEKFDRIFIGGGS-----------------------------------------EKLKEIISASWEIIKKGGRI 141 (198)
T ss_pred hhHhhcCCCCCEEEECCCc-----------------------------------------ccHHHHHHHHHHHcCCCcEE
Confidence 2221 23578888774211 12334677777899999999
Q ss_pred EEEec
Q 018250 211 VFSLI 215 (359)
Q Consensus 211 vl~~~ 215 (359)
++...
T Consensus 142 v~~~~ 146 (198)
T PRK00377 142 VIDAI 146 (198)
T ss_pred EEEee
Confidence 87553
No 117
>PRK00811 spermidine synthase; Provisional
Probab=97.20 E-value=0.00077 Score=64.70 Aligned_cols=108 Identities=12% Similarity=0.075 Sum_probs=62.8
Q ss_pred CcceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCC--------Cc-cccccc
Q 018250 56 SYTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPP--------RK-YYAAGV 126 (359)
Q Consensus 56 ~~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~--------~~-~~~~~v 126 (359)
+++.+|||+|||+|..+..+++ . .+.-+|...|+-...-...-+.++. .+ -++.+-
T Consensus 75 ~~p~~VL~iG~G~G~~~~~~l~--------~-------~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~D 139 (283)
T PRK00811 75 PNPKRVLIIGGGDGGTLREVLK--------H-------PSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGD 139 (283)
T ss_pred CCCCEEEEEecCchHHHHHHHc--------C-------CCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECc
Confidence 4567999999999999887741 1 1123677777765443333222221 11 123332
Q ss_pred CcccccCCCCCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 018250 127 PGSFHGRLFPKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVP 206 (359)
Q Consensus 127 pgsfy~~l~p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~p 206 (359)
+..|-.. +++++|+|++..+-+|. .+.. .|. ..|++..++-|+|
T Consensus 140 a~~~l~~--~~~~yDvIi~D~~dp~~--~~~~-------------------------l~t-------~ef~~~~~~~L~~ 183 (283)
T PRK00811 140 GIKFVAE--TENSFDVIIVDSTDPVG--PAEG-------------------------LFT-------KEFYENCKRALKE 183 (283)
T ss_pred hHHHHhh--CCCcccEEEECCCCCCC--chhh-------------------------hhH-------HHHHHHHHHhcCC
Confidence 2233222 56789999997655551 0110 111 3577777899999
Q ss_pred CceeEEEe
Q 018250 207 GGLMVFSL 214 (359)
Q Consensus 207 GG~lvl~~ 214 (359)
||+|++..
T Consensus 184 gGvlv~~~ 191 (283)
T PRK00811 184 DGIFVAQS 191 (283)
T ss_pred CcEEEEeC
Confidence 99998754
No 118
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=97.17 E-value=0.0011 Score=67.42 Aligned_cols=125 Identities=12% Similarity=0.059 Sum_probs=76.7
Q ss_pred ceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCC---Cc-ccccccCcccccC
Q 018250 58 TVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPP---RK-YYAAGVPGSFHGR 133 (359)
Q Consensus 58 ~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~---~~-~~~~~vpgsfy~~ 133 (359)
..+|+|+|||+|.-|..++ +.. .+..+|+..|+..+....+-+.+.. .. .+.. ++...-
T Consensus 238 g~~VLD~cagpGgkt~~la--------~~~------~~~g~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~---~Da~~l 300 (431)
T PRK14903 238 GLRVLDTCAAPGGKTTAIA--------ELM------KDQGKILAVDISREKIQLVEKHAKRLKLSSIEIKI---ADAERL 300 (431)
T ss_pred CCEEEEeCCCccHHHHHHH--------HHc------CCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEE---Cchhhh
Confidence 4689999999999999885 222 1245899999988776665544432 11 1222 232211
Q ss_pred C-CCCCceeEEEe---cCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCce
Q 018250 134 L-FPKSTLHVVNS---FNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGL 209 (359)
Q Consensus 134 l-~p~~s~d~~~S---~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~ 209 (359)
. +.++++|.|++ ++.+..+.+.|+.... .+++ -.++..+.....|..-++-|+|||+
T Consensus 301 ~~~~~~~fD~Vl~DaPCsg~G~~~~~p~~~~~---------------~~~~----~~~~l~~~Q~~iL~~a~~~LkpGG~ 361 (431)
T PRK14903 301 TEYVQDTFDRILVDAPCTSLGTARNHPEVLRR---------------VNKE----DFKKLSEIQLRIVSQAWKLLEKGGI 361 (431)
T ss_pred hhhhhccCCEEEECCCCCCCccccCChHHHHh---------------CCHH----HHHHHHHHHHHHHHHHHHhcCCCCE
Confidence 1 33578999987 3445555444432211 1111 1233445667789888999999999
Q ss_pred eEEEeccCC
Q 018250 210 MVFSLITGP 218 (359)
Q Consensus 210 lvl~~~g~~ 218 (359)
|+.++....
T Consensus 362 LvYsTCs~~ 370 (431)
T PRK14903 362 LLYSTCTVT 370 (431)
T ss_pred EEEEECCCC
Confidence 999987543
No 119
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=97.10 E-value=0.0032 Score=60.63 Aligned_cols=103 Identities=17% Similarity=0.241 Sum_probs=62.5
Q ss_pred eEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCC------Cc--ccccccCccc
Q 018250 59 VRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPP------RK--YYAAGVPGSF 130 (359)
Q Consensus 59 ~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~------~~--~~~~~vpgsf 130 (359)
.+|||+|||-|..++.++ +. .|+.++.+.|.- +..+--...+ +. +|.+ +-
T Consensus 160 ~~vlDlGCG~Gvlg~~la--------~~-------~p~~~vtmvDvn---~~Av~~ar~Nl~~N~~~~~~v~~s----~~ 217 (300)
T COG2813 160 GKVLDLGCGYGVLGLVLA--------KK-------SPQAKLTLVDVN---ARAVESARKNLAANGVENTEVWAS----NL 217 (300)
T ss_pred CcEEEeCCCccHHHHHHH--------Hh-------CCCCeEEEEecC---HHHHHHHHHhHHHcCCCccEEEEe----cc
Confidence 499999999999999884 33 467889888863 3333221111 11 2222 44
Q ss_pred ccCCCCCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCcee
Q 018250 131 HGRLFPKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLM 210 (359)
Q Consensus 131 y~~l~p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~l 210 (359)
|+.+.. ++|+|+|| |+-...+. ....+. ..++..-++-|++||.|
T Consensus 218 ~~~v~~--kfd~IisN---------PPfh~G~~-------------v~~~~~-----------~~~i~~A~~~L~~gGeL 262 (300)
T COG2813 218 YEPVEG--KFDLIISN---------PPFHAGKA-------------VVHSLA-----------QEIIAAAARHLKPGGEL 262 (300)
T ss_pred cccccc--cccEEEeC---------CCccCCcc-------------hhHHHH-----------HHHHHHHHHhhccCCEE
Confidence 555544 99999994 44322210 001111 13566678899999999
Q ss_pred EEEeccCC
Q 018250 211 VFSLITGP 218 (359)
Q Consensus 211 vl~~~g~~ 218 (359)
.++.-|..
T Consensus 263 ~iVan~~l 270 (300)
T COG2813 263 WIVANRHL 270 (300)
T ss_pred EEEEcCCC
Confidence 98886433
No 120
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=97.08 E-value=0.002 Score=65.74 Aligned_cols=125 Identities=13% Similarity=0.110 Sum_probs=74.0
Q ss_pred ceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCCCcc-cccccCcccccCCCC
Q 018250 58 TVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPPRKY-YAAGVPGSFHGRLFP 136 (359)
Q Consensus 58 ~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~-~~~~vpgsfy~~l~p 136 (359)
..+|+|+|||+|..|+.+. +... ...+|+..|+.......+-+.+....+ -+..+.++.. .+.|
T Consensus 251 g~~VLDlgaG~G~kt~~la--------~~~~------~~~~V~avD~s~~~l~~~~~~~~~~g~~~v~~~~~Da~-~~~~ 315 (445)
T PRK14904 251 GSTVLDLCAAPGGKSTFMA--------ELMQ------NRGQITAVDRYPQKLEKIRSHASALGITIIETIEGDAR-SFSP 315 (445)
T ss_pred CCEEEEECCCCCHHHHHHH--------HHhC------CCcEEEEEECCHHHHHHHHHHHHHhCCCeEEEEeCccc-cccc
Confidence 4689999999999998774 2221 124899999998877666555432110 0122223432 2346
Q ss_pred CCceeEEEe----cCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceeEE
Q 018250 137 KSTLHVVNS----FNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLMVF 212 (359)
Q Consensus 137 ~~s~d~~~S----~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lvl 212 (359)
++++|.|+. +..-+|- +-|+... . ..++.. ++..+....+|..-++-|+|||+|+.
T Consensus 316 ~~~fD~Vl~D~Pcsg~g~~~-r~p~~~~--------------~-~~~~~~----~~l~~~q~~iL~~a~~~lkpgG~lvy 375 (445)
T PRK14904 316 EEQPDAILLDAPCTGTGVLG-RRAELRW--------------K-LTPEKL----AELVGLQAELLDHAASLLKPGGVLVY 375 (445)
T ss_pred CCCCCEEEEcCCCCCcchhh-cCcchhh--------------c-CCHHHH----HHHHHHHHHHHHHHHHhcCCCcEEEE
Confidence 788999985 2222221 1222110 0 011111 22334566789999999999999999
Q ss_pred EeccC
Q 018250 213 SLITG 217 (359)
Q Consensus 213 ~~~g~ 217 (359)
++...
T Consensus 376 stcs~ 380 (445)
T PRK14904 376 ATCSI 380 (445)
T ss_pred EeCCC
Confidence 88644
No 121
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=97.04 E-value=0.0056 Score=59.11 Aligned_cols=74 Identities=12% Similarity=0.034 Sum_probs=40.4
Q ss_pred cceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCCCccc-ccccCcccccCCC
Q 018250 57 YTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPPRKYY-AAGVPGSFHGRLF 135 (359)
Q Consensus 57 ~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~~-~~~vpgsfy~~l~ 135 (359)
+..+|+|+|||||-.++..+ +. --..++..|+-+.--..-+.+...+.+= ...+ ..|+..-.
T Consensus 162 ~g~~vlDvGcGSGILaIAa~--------kL--------GA~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~-~~~~~~~~ 224 (300)
T COG2264 162 KGKTVLDVGCGSGILAIAAA--------KL--------GAKKVVGVDIDPQAVEAARENARLNGVELLVQA-KGFLLLEV 224 (300)
T ss_pred CCCEEEEecCChhHHHHHHH--------Hc--------CCceEEEecCCHHHHHHHHHHHHHcCCchhhhc-ccccchhh
Confidence 46899999999999999874 21 1235777776442211111111100000 0011 24444556
Q ss_pred CCC-ceeEEEecC
Q 018250 136 PKS-TLHVVNSFN 147 (359)
Q Consensus 136 p~~-s~d~~~S~~ 147 (359)
|.+ .+|+|++|-
T Consensus 225 ~~~~~~DvIVANI 237 (300)
T COG2264 225 PENGPFDVIVANI 237 (300)
T ss_pred cccCcccEEEehh
Confidence 664 899999853
No 122
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=97.04 E-value=0.0019 Score=60.86 Aligned_cols=122 Identities=12% Similarity=0.129 Sum_probs=67.3
Q ss_pred ceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCCCcccccccCcccccCCC--
Q 018250 58 TVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPPRKYYAAGVPGSFHGRLF-- 135 (359)
Q Consensus 58 ~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~~~~~vpgsfy~~l~-- 135 (359)
..+|+|+|||+|..++.+. +. .|..+++..|+........-+++..... ..+.+++.+.+-
T Consensus 87 ~~~vLDlg~GsG~i~l~la--------~~-------~~~~~v~~vDis~~al~~A~~N~~~~~~--~~~~~D~~~~l~~~ 149 (251)
T TIGR03704 87 TLVVVDLCCGSGAVGAALA--------AA-------LDGIELHAADIDPAAVRCARRNLADAGG--TVHEGDLYDALPTA 149 (251)
T ss_pred CCEEEEecCchHHHHHHHH--------Hh-------CCCCEEEEEECCHHHHHHHHHHHHHcCC--EEEEeechhhcchh
Confidence 4689999999999999884 22 2346888999876555444433321111 112244443221
Q ss_pred CCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHH-----HHH--HHHHHHHHHHHHHHHHhhccCc
Q 018250 136 PKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHE-----TFQ--AQFRSDFESILNARAEELVPGG 208 (359)
Q Consensus 136 p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~-----~y~--~Q~~~D~~~fL~~Ra~EL~pGG 208 (359)
..+++|+++|+ |+-+.... ....+|++.. +.. .....-+..++..-.+-|+|||
T Consensus 150 ~~~~fDlVv~N---------PPy~~~~~----------~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG 210 (251)
T TIGR03704 150 LRGRVDILAAN---------APYVPTDA----------IALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGG 210 (251)
T ss_pred cCCCEeEEEEC---------CCCCCchh----------hhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCC
Confidence 13579999994 33221100 0001222211 000 0112235578888788999999
Q ss_pred eeEEEec
Q 018250 209 LMVFSLI 215 (359)
Q Consensus 209 ~lvl~~~ 215 (359)
++++...
T Consensus 211 ~l~l~~~ 217 (251)
T TIGR03704 211 HLLVETS 217 (251)
T ss_pred EEEEEEC
Confidence 9998864
No 123
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=97.00 E-value=0.011 Score=53.07 Aligned_cols=20 Identities=25% Similarity=0.228 Sum_probs=17.5
Q ss_pred cceEEEeecCCCCcccHHHH
Q 018250 57 YTVRIADLGCSVGPNTFISV 76 (359)
Q Consensus 57 ~~~~IaDlGCs~G~nt~~~~ 76 (359)
+..+++|+|||||.-|+..+
T Consensus 34 ~g~~l~DIGaGtGsi~iE~a 53 (187)
T COG2242 34 PGDRLWDIGAGTGSITIEWA 53 (187)
T ss_pred CCCEEEEeCCCccHHHHHHH
Confidence 34699999999999999885
No 124
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=97.00 E-value=0.0025 Score=64.99 Aligned_cols=122 Identities=15% Similarity=0.127 Sum_probs=69.7
Q ss_pred ceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCC---CcccccccCcccccC-
Q 018250 58 TVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPP---RKYYAAGVPGSFHGR- 133 (359)
Q Consensus 58 ~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~---~~~~~~~vpgsfy~~- 133 (359)
..+|+|+|||+|..|+.+++ .. .+.-+++..|+..+.-..+-+++.. .. +.-+-+++.+.
T Consensus 251 g~~VLDlgaG~G~~t~~la~--------~~------~~~~~v~avDi~~~~l~~~~~n~~~~g~~~--v~~~~~D~~~~~ 314 (444)
T PRK14902 251 GDTVLDACAAPGGKTTHIAE--------LL------KNTGKVVALDIHEHKLKLIEENAKRLGLTN--IETKALDARKVH 314 (444)
T ss_pred CCEEEEeCCCCCHHHHHHHH--------Hh------CCCCEEEEEeCCHHHHHHHHHHHHHcCCCe--EEEEeCCccccc
Confidence 46899999999999998852 22 1235899999987665555444322 11 12222344322
Q ss_pred -CCCCCceeEEEecC---cccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCce
Q 018250 134 -LFPKSTLHVVNSFN---AMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGL 209 (359)
Q Consensus 134 -l~p~~s~d~~~S~~---alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~ 209 (359)
.++ +++|+|++.. ....+++.|+.. |.+ .+... +...+--..+|+.-.+-|+|||+
T Consensus 315 ~~~~-~~fD~Vl~D~Pcsg~G~~~~~p~~~-------~~~--------~~~~~----~~l~~~q~~iL~~a~~~LkpGG~ 374 (444)
T PRK14902 315 EKFA-EKFDKILVDAPCSGLGVIRRKPDIK-------YNK--------TKEDI----ESLQEIQLEILESVAQYLKKGGI 374 (444)
T ss_pred chhc-ccCCEEEEcCCCCCCeeeccCcchh-------hcC--------CHHHH----HHHHHHHHHHHHHHHHHcCCCCE
Confidence 134 7899999842 233333333211 110 11111 11222335678888899999999
Q ss_pred eEEEec
Q 018250 210 MVFSLI 215 (359)
Q Consensus 210 lvl~~~ 215 (359)
|+.++.
T Consensus 375 lvystc 380 (444)
T PRK14902 375 LVYSTC 380 (444)
T ss_pred EEEEcC
Confidence 997664
No 125
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=97.00 E-value=0.00071 Score=61.46 Aligned_cols=110 Identities=19% Similarity=0.299 Sum_probs=67.5
Q ss_pred EEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCC---Cc-ccccccCcccccCCC
Q 018250 60 RIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPP---RK-YYAAGVPGSFHGRLF 135 (359)
Q Consensus 60 ~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~---~~-~~~~~vpgsfy~~l~ 135 (359)
.++|+|||.|...+.++ .. .|+..++.-|.-.+-...+.+.... .. .++.+-...+...++
T Consensus 20 l~lEIG~G~G~~l~~~A--------~~-------~Pd~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l~~~~ 84 (195)
T PF02390_consen 20 LILEIGCGKGEFLIELA--------KR-------NPDINFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDARELLRRLF 84 (195)
T ss_dssp EEEEET-TTSHHHHHHH--------HH-------STTSEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTHHHHHS
T ss_pred eEEEecCCCCHHHHHHH--------HH-------CCCCCEEEEecchHHHHHHHHHHHhhcccceEEEEccHHHHHhhcc
Confidence 88999999999998885 22 4677888888876554444333221 22 344444455667789
Q ss_pred CCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceeEEEe
Q 018250 136 PKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLMVFSL 214 (359)
Q Consensus 136 p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lvl~~ 214 (359)
|++|+|-++-++.==|-.+-.. |-++. . ..||..-++-|+|||.+.+.+
T Consensus 85 ~~~~v~~i~i~FPDPWpK~rH~-----------krRl~----~---------------~~fl~~~~~~L~~gG~l~~~T 133 (195)
T PF02390_consen 85 PPGSVDRIYINFPDPWPKKRHH-----------KRRLV----N---------------PEFLELLARVLKPGGELYFAT 133 (195)
T ss_dssp TTTSEEEEEEES-----SGGGG-----------GGSTT----S---------------HHHHHHHHHHEEEEEEEEEEE
T ss_pred cCCchheEEEeCCCCCcccchh-----------hhhcC----C---------------chHHHHHHHHcCCCCEEEEEe
Confidence 9999999999887777322110 00110 1 137888899999999987776
No 126
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=96.88 E-value=0.0057 Score=56.06 Aligned_cols=21 Identities=14% Similarity=0.249 Sum_probs=18.1
Q ss_pred cceEEEeecCCCCcccHHHHH
Q 018250 57 YTVRIADLGCSVGPNTFISVQ 77 (359)
Q Consensus 57 ~~~~IaDlGCs~G~nt~~~~~ 77 (359)
...+|||+|||||++|..+.+
T Consensus 72 ~g~~VLEIGtGsGY~aAvla~ 92 (209)
T COG2518 72 PGDRVLEIGTGSGYQAAVLAR 92 (209)
T ss_pred CCCeEEEECCCchHHHHHHHH
Confidence 458999999999999988753
No 127
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=96.85 E-value=0.0039 Score=61.07 Aligned_cols=76 Identities=11% Similarity=0.022 Sum_probs=43.8
Q ss_pred ceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCC---Cc-ccccccCcccccC
Q 018250 58 TVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPP---RK-YYAAGVPGSFHGR 133 (359)
Q Consensus 58 ~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~---~~-~~~~~vpgsfy~~ 133 (359)
..+|+|+|||+|.+|..+. +.+.. .-.|+.-|.........-+.+.. .. .++ .|+..+.
T Consensus 81 g~~VLDIG~GtG~~a~~LA--------~~~~~------~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i---~gD~~~~ 143 (322)
T PRK13943 81 GMRVLEIGGGTGYNAAVMS--------RVVGE------KGLVVSVEYSRKICEIAKRNVRRLGIENVIFV---CGDGYYG 143 (322)
T ss_pred CCEEEEEeCCccHHHHHHH--------HhcCC------CCEEEEEECCHHHHHHHHHHHHHcCCCcEEEE---eCChhhc
Confidence 4689999999999999884 22211 12577777765443322222211 11 122 3455554
Q ss_pred CCCCCceeEEEecCccc
Q 018250 134 LFPKSTLHVVNSFNAMH 150 (359)
Q Consensus 134 l~p~~s~d~~~S~~alH 150 (359)
+.+.+++|+|++..+++
T Consensus 144 ~~~~~~fD~Ii~~~g~~ 160 (322)
T PRK13943 144 VPEFAPYDVIFVTVGVD 160 (322)
T ss_pred ccccCCccEEEECCchH
Confidence 44556789998875543
No 128
>PRK04457 spermidine synthase; Provisional
Probab=96.73 E-value=0.0047 Score=58.66 Aligned_cols=112 Identities=10% Similarity=0.079 Sum_probs=61.9
Q ss_pred CcceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhC--CC--Ccc-cccccCccc
Q 018250 56 SYTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTL--PP--RKY-YAAGVPGSF 130 (359)
Q Consensus 56 ~~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l--~~--~~~-~~~~vpgsf 130 (359)
+.+.+|+|+|||+|..+..+. +. .|..++...|+-...-...-+.. +. .++ ++.+-...|
T Consensus 65 ~~~~~vL~IG~G~G~l~~~l~--------~~-------~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~ 129 (262)
T PRK04457 65 PRPQHILQIGLGGGSLAKFIY--------TY-------LPDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEY 129 (262)
T ss_pred CCCCEEEEECCCHhHHHHHHH--------Hh-------CCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHH
Confidence 346789999999999888774 22 24557777777443322211111 11 111 222222223
Q ss_pred ccCCCCCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCcee
Q 018250 131 HGRLFPKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLM 210 (359)
Q Consensus 131 y~~l~p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~l 210 (359)
..+. ++++|+|+... ++-- ..|..+. -..|++.-.+-|+|||++
T Consensus 130 l~~~--~~~yD~I~~D~-~~~~-~~~~~l~--------------------------------t~efl~~~~~~L~pgGvl 173 (262)
T PRK04457 130 IAVH--RHSTDVILVDG-FDGE-GIIDALC--------------------------------TQPFFDDCRNALSSDGIF 173 (262)
T ss_pred HHhC--CCCCCEEEEeC-CCCC-CCccccC--------------------------------cHHHHHHHHHhcCCCcEE
Confidence 2221 35788888752 2211 1221111 124777888889999999
Q ss_pred EEEeccCC
Q 018250 211 VFSLITGP 218 (359)
Q Consensus 211 vl~~~g~~ 218 (359)
+++..+++
T Consensus 174 vin~~~~~ 181 (262)
T PRK04457 174 VVNLWSRD 181 (262)
T ss_pred EEEcCCCc
Confidence 99877654
No 129
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=96.73 E-value=0.0064 Score=57.70 Aligned_cols=122 Identities=14% Similarity=0.142 Sum_probs=69.0
Q ss_pred ceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCC---Ccc-cccccCcccccC
Q 018250 58 TVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPP---RKY-YAAGVPGSFHGR 133 (359)
Q Consensus 58 ~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~---~~~-~~~~vpgsfy~~ 133 (359)
..+|+|+|||+|.-|..+.+ ... +.-.|+..|.-......+-+++.. ..+ ++. ++.-.-
T Consensus 72 g~~VLDl~ag~G~kt~~la~--------~~~------~~g~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~---~D~~~~ 134 (264)
T TIGR00446 72 PERVLDMAAAPGGKTTQISA--------LMK------NEGAIVANEFSKSRTKVLIANINRCGVLNVAVTN---FDGRVF 134 (264)
T ss_pred cCEEEEECCCchHHHHHHHH--------HcC------CCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEec---CCHHHh
Confidence 46899999999999988752 221 123789999988777666555432 111 111 121111
Q ss_pred CCCCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHH----HHHHHHHHHHHHHHHHHHHHhhccCce
Q 018250 134 LFPKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVH----ETFQAQFRSDFESILNARAEELVPGGL 209 (359)
Q Consensus 134 l~p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~----~~y~~Q~~~D~~~fL~~Ra~EL~pGG~ 209 (359)
..+.+++|.|+. ++|+.-. |.+ ...|+.. ..-..+..+....+|+.-++-|+|||+
T Consensus 135 ~~~~~~fD~Vl~--------D~Pcsg~---------G~~---~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~ 194 (264)
T TIGR00446 135 GAAVPKFDAILL--------DAPCSGE---------GVI---RKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGV 194 (264)
T ss_pred hhhccCCCEEEE--------cCCCCCC---------ccc---ccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCE
Confidence 123456888886 3333211 100 0111111 111223334556689888999999999
Q ss_pred eEEEecc
Q 018250 210 MVFSLIT 216 (359)
Q Consensus 210 lvl~~~g 216 (359)
|+.++..
T Consensus 195 lvYstcs 201 (264)
T TIGR00446 195 LVYSTCS 201 (264)
T ss_pred EEEEeCC
Confidence 9988753
No 130
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=96.71 E-value=0.0071 Score=61.54 Aligned_cols=126 Identities=12% Similarity=0.069 Sum_probs=69.4
Q ss_pred ceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCC---CcccccccCcccccCC
Q 018250 58 TVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPP---RKYYAAGVPGSFHGRL 134 (359)
Q Consensus 58 ~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~---~~~~~~~vpgsfy~~l 134 (359)
..+|+|+|||+|..|+.+. +... +.-.++..|........+-+++.. .. +..+.++.-.-.
T Consensus 253 g~~VLDl~ag~G~kt~~la--------~~~~------~~g~v~a~D~~~~rl~~~~~n~~r~g~~~--v~~~~~D~~~~~ 316 (434)
T PRK14901 253 GEVILDACAAPGGKTTHIA--------ELMG------DQGEIWAVDRSASRLKKLQENAQRLGLKS--IKILAADSRNLL 316 (434)
T ss_pred cCEEEEeCCCCchhHHHHH--------HHhC------CCceEEEEcCCHHHHHHHHHHHHHcCCCe--EEEEeCChhhcc
Confidence 4689999999999999885 2221 234789999977665555444321 11 111222332211
Q ss_pred ----CCCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCcee
Q 018250 135 ----FPKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLM 210 (359)
Q Consensus 135 ----~p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~l 210 (359)
++++++|.|+. ++|+.-.... ..+.. +... ..++.. +...+.-..+|..-++-|||||+|
T Consensus 317 ~~~~~~~~~fD~Vl~--------DaPCSg~G~~--~r~p~-~~~~-~~~~~~----~~l~~~Q~~iL~~a~~~lkpgG~l 380 (434)
T PRK14901 317 ELKPQWRGYFDRILL--------DAPCSGLGTL--HRHPD-ARWR-QTPEKI----QELAPLQAELLESLAPLLKPGGTL 380 (434)
T ss_pred cccccccccCCEEEE--------eCCCCccccc--ccCcc-hhhh-CCHHHH----HHHHHHHHHHHHHHHHhcCCCCEE
Confidence 34678999986 2333211000 00000 0000 011111 223445578898889999999999
Q ss_pred EEEec
Q 018250 211 VFSLI 215 (359)
Q Consensus 211 vl~~~ 215 (359)
|.++.
T Consensus 381 vystc 385 (434)
T PRK14901 381 VYATC 385 (434)
T ss_pred EEEeC
Confidence 98764
No 131
>PRK07402 precorrin-6B methylase; Provisional
Probab=96.67 E-value=0.0089 Score=53.83 Aligned_cols=37 Identities=16% Similarity=0.173 Sum_probs=27.1
Q ss_pred ceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCch
Q 018250 58 TVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDF 109 (359)
Q Consensus 58 ~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDF 109 (359)
..+|+|+|||+|..|+.+. +. .|..+++.-|+-....
T Consensus 41 ~~~VLDiG~G~G~~~~~la--------~~-------~~~~~V~~vD~s~~~~ 77 (196)
T PRK07402 41 DSVLWDIGAGTGTIPVEAG--------LL-------CPKGRVIAIERDEEVV 77 (196)
T ss_pred CCEEEEeCCCCCHHHHHHH--------HH-------CCCCEEEEEeCCHHHH
Confidence 4689999999999998774 22 1346888888865443
No 132
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=96.67 E-value=0.0043 Score=57.01 Aligned_cols=19 Identities=16% Similarity=0.298 Sum_probs=15.5
Q ss_pred ceEEEeecCCCCcccHHHH
Q 018250 58 TVRIADLGCSVGPNTFISV 76 (359)
Q Consensus 58 ~~~IaDlGCs~G~nt~~~~ 76 (359)
..+|+|+|||||++|..+.
T Consensus 73 g~~VLeIGtGsGY~aAlla 91 (209)
T PF01135_consen 73 GDRVLEIGTGSGYQAALLA 91 (209)
T ss_dssp T-EEEEES-TTSHHHHHHH
T ss_pred CCEEEEecCCCcHHHHHHH
Confidence 4799999999999999885
No 133
>PLN02672 methionine S-methyltransferase
Probab=96.62 E-value=0.01 Score=66.36 Aligned_cols=123 Identities=15% Similarity=0.115 Sum_probs=72.2
Q ss_pred eEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCC-------------------C
Q 018250 59 VRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPP-------------------R 119 (359)
Q Consensus 59 ~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~-------------------~ 119 (359)
.+|+|+|||+|..++.+. +.+ |..+++..|+.........++... .
T Consensus 120 ~~VLDlG~GSG~Iai~La--------~~~-------~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~ 184 (1082)
T PLN02672 120 KTVAELGCGNGWISIAIA--------EKW-------LPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLD 184 (1082)
T ss_pred CEEEEEecchHHHHHHHH--------HHC-------CCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccc
Confidence 589999999999999884 332 345889999887665554433311 0
Q ss_pred cccccccCcccccCCCCC--CceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHH--------------
Q 018250 120 KYYAAGVPGSFHGRLFPK--STLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHE-------------- 183 (359)
Q Consensus 120 ~~~~~~vpgsfy~~l~p~--~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~-------------- 183 (359)
+ +.-+.++..+.+ ++ ..+|+|+| .|+-+.+..-+.. +++|.+
T Consensus 185 r--V~f~~sDl~~~~-~~~~~~fDlIVS---------NPPYI~~~e~~~l----------~~eV~~~ep~~~~~~~~p~~ 242 (1082)
T PLN02672 185 R--VEFYESDLLGYC-RDNNIELDRIVG---------CIPQILNPNPEAM----------SKLVTENASEEFLYSLSNYC 242 (1082)
T ss_pred c--EEEEECchhhhc-cccCCceEEEEE---------CCCcCCCcchhhc----------ChhhhhccccccccccCccc
Confidence 1 122334554443 32 26999999 4555443221111 122210
Q ss_pred HH-H----HHHHHHHHHHHHHHHHhhccCceeEEEeccCC
Q 018250 184 TF-Q----AQFRSDFESILNARAEELVPGGLMVFSLITGP 218 (359)
Q Consensus 184 ~y-~----~Q~~~D~~~fL~~Ra~EL~pGG~lvl~~~g~~ 218 (359)
|- . +-.-.....++..-.+-|+|||.|++.+.++.
T Consensus 243 AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~l~lEiG~~q 282 (1082)
T PLN02672 243 ALQGFVEDQFGLGLIARAVEEGISVIKPMGIMIFNMGGRP 282 (1082)
T ss_pred cccCCCCCCcHHHHHHHHHHHHHHhccCCCEEEEEECccH
Confidence 00 0 11122245677788889999999999997654
No 134
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=96.45 E-value=0.0069 Score=53.27 Aligned_cols=75 Identities=12% Similarity=-0.020 Sum_probs=48.3
Q ss_pred ceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCC-CcccccccCcccccCCCC
Q 018250 58 TVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPP-RKYYAAGVPGSFHGRLFP 136 (359)
Q Consensus 58 ~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~-~~~~~~~vpgsfy~~l~p 136 (359)
..+|+|+|||+|..|..+++ + ..+++.-|+-......+-+.+.. ..+ .-+-+++.+-.++
T Consensus 14 ~~~vLEiG~G~G~lt~~l~~--------~---------~~~v~~vE~~~~~~~~~~~~~~~~~~v--~ii~~D~~~~~~~ 74 (169)
T smart00650 14 GDTVLEIGPGKGALTEELLE--------R---------AARVTAIEIDPRLAPRLREKFAAADNL--TVIHGDALKFDLP 74 (169)
T ss_pred cCEEEEECCCccHHHHHHHh--------c---------CCeEEEEECCHHHHHHHHHHhccCCCE--EEEECchhcCCcc
Confidence 45899999999999998853 1 12677777766444444333322 111 1234577666677
Q ss_pred CCceeEEEecCcccc
Q 018250 137 KSTLHVVNSFNAMHW 151 (359)
Q Consensus 137 ~~s~d~~~S~~alHW 151 (359)
+.++|.++|+.-.|+
T Consensus 75 ~~~~d~vi~n~Py~~ 89 (169)
T smart00650 75 KLQPYKVVGNLPYNI 89 (169)
T ss_pred ccCCCEEEECCCccc
Confidence 777899999755554
No 135
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=96.43 E-value=0.0054 Score=58.88 Aligned_cols=122 Identities=17% Similarity=0.212 Sum_probs=67.5
Q ss_pred EEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCC---Cc-ccccccCcccccCCC
Q 018250 60 RIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPP---RK-YYAAGVPGSFHGRLF 135 (359)
Q Consensus 60 ~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~---~~-~~~~~vpgsfy~~l~ 135 (359)
+|+|+|||||..++.++ +. .|...|+..|+...-....-++... .+ +++. ++.+..+-
T Consensus 113 ~ilDlGTGSG~iai~la--------~~-------~~~~~V~a~Dis~~Al~~A~~Na~~~~l~~~~~~~---~dlf~~~~ 174 (280)
T COG2890 113 RILDLGTGSGAIAIALA--------KE-------GPDAEVIAVDISPDALALARENAERNGLVRVLVVQ---SDLFEPLR 174 (280)
T ss_pred cEEEecCChHHHHHHHH--------hh-------CcCCeEEEEECCHHHHHHHHHHHHHcCCccEEEEe---eecccccC
Confidence 89999999999999884 33 3557999999976322221111111 11 1122 14444443
Q ss_pred CCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHH-HHHHHHHHHHHHHHHhhccCceeEEEe
Q 018250 136 PKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQA-QFRSDFESILNARAEELVPGGLMVFSL 214 (359)
Q Consensus 136 p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~-Q~~~D~~~fL~~Ra~EL~pGG~lvl~~ 214 (359)
. .+|+++| .|+-+... .+....+.+. ..|.. ..+.. -......+|+..-..-|+|||.+++..
T Consensus 175 ~--~fDlIVs---------NPPYip~~-~~~~~~~~~~---~EP~~-Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~ 238 (280)
T COG2890 175 G--KFDLIVS---------NPPYIPAE-DPELLPEVVR---YEPLL-ALVGGGDGLEVYRRILGEAPDILKPGGVLILEI 238 (280)
T ss_pred C--ceeEEEe---------CCCCCCCc-ccccChhhhc---cCHHH-HHccCccHHHHHHHHHHhhHHHcCCCcEEEEEE
Confidence 3 8999999 46666543 1111110000 00000 01110 122345668888888999999998887
Q ss_pred c
Q 018250 215 I 215 (359)
Q Consensus 215 ~ 215 (359)
.
T Consensus 239 g 239 (280)
T COG2890 239 G 239 (280)
T ss_pred C
Confidence 4
No 136
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=96.40 E-value=0.056 Score=51.46 Aligned_cols=128 Identities=13% Similarity=0.168 Sum_probs=68.2
Q ss_pred ceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCC----CCcccccc--cCcccc
Q 018250 58 TVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLP----PRKYYAAG--VPGSFH 131 (359)
Q Consensus 58 ~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~----~~~~~~~~--vpgsfy 131 (359)
...|+|+|||+|.-|+.++.. .|+-.+...|...---.-.-.+.. ...+.+.- .-++-|
T Consensus 149 ~~~ildlgtGSGaIslsll~~---------------L~~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~~me~d~~ 213 (328)
T KOG2904|consen 149 HTHILDLGTGSGAISLSLLHG---------------LPQCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVIHNIMESDAS 213 (328)
T ss_pred cceEEEecCCccHHHHHHHhc---------------CCCceEEEEeccHHHHHHHHHHHHHHhhcCceEEEecccccccc
Confidence 347999999999999988532 234455566654311110000000 00111110 012344
Q ss_pred cCC-CCCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHH--------HHHHHHHHHHHHHH
Q 018250 132 GRL-FPKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQ--------FRSDFESILNARAE 202 (359)
Q Consensus 132 ~~l-~p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q--------~~~D~~~fL~~Ra~ 202 (359)
... .+.+.+|+++| .|+-+.+.+-+. ..|+|. .|..- .-.-+..|+..-.+
T Consensus 214 ~~~~l~~~~~dllvs---------NPPYI~~dD~~~----------l~~eV~-~yEp~lALdGg~eG~~~~~~~~~~a~R 273 (328)
T KOG2904|consen 214 DEHPLLEGKIDLLVS---------NPPYIRKDDNRQ----------LKPEVR-LYEPKLALDGGLEGYDNLVHYWLLATR 273 (328)
T ss_pred cccccccCceeEEec---------CCCcccccchhh----------cCchhe-ecCchhhhccccchhHHHHHHHHhhHh
Confidence 444 78899999999 455544322110 112221 00000 11124567777889
Q ss_pred hhccCceeEEEeccCCCC
Q 018250 203 ELVPGGLMVFSLITGPSG 220 (359)
Q Consensus 203 EL~pGG~lvl~~~g~~~~ 220 (359)
-|+|||.+.+.+.+++..
T Consensus 274 ~Lq~gg~~~le~~~~~~~ 291 (328)
T KOG2904|consen 274 MLQPGGFEQLELVERKEH 291 (328)
T ss_pred hcccCCeEEEEecccccC
Confidence 999999999999988653
No 137
>PRK03612 spermidine synthase; Provisional
Probab=96.32 E-value=0.014 Score=60.77 Aligned_cols=21 Identities=19% Similarity=0.078 Sum_probs=17.1
Q ss_pred CcceEEEeecCCCCcccHHHH
Q 018250 56 SYTVRIADLGCSVGPNTFISV 76 (359)
Q Consensus 56 ~~~~~IaDlGCs~G~nt~~~~ 76 (359)
+++.+|+|+|||+|..+..++
T Consensus 296 ~~~~rVL~IG~G~G~~~~~ll 316 (521)
T PRK03612 296 ARPRRVLVLGGGDGLALREVL 316 (521)
T ss_pred CCCCeEEEEcCCccHHHHHHH
Confidence 456799999999999777663
No 138
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=96.29 E-value=0.0094 Score=61.89 Aligned_cols=137 Identities=12% Similarity=0.093 Sum_probs=83.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCcceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCC
Q 018250 25 QFQRGTVDAAKELVREAIVNKLDVGSYGYDNSYTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDH 104 (359)
Q Consensus 25 ~~Q~~~~~~~~~~l~~ai~~~~~~~~~~~~~~~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDL 104 (359)
..|++.++...|.+.-...+ .+ +.....++|+|||.|..++.++ +. .|+.-++.-|.
T Consensus 323 ~~q~~~~e~~~p~~~i~~ek-----lf---~~~~p~~lEIG~G~G~~~~~~A--------~~-------~p~~~~iGiE~ 379 (506)
T PRK01544 323 GVQQNLLDNELPKYLFSKEK-----LV---NEKRKVFLEIGFGMGEHFINQA--------KM-------NPDALFIGVEV 379 (506)
T ss_pred HHHHHHHHhhhhhhCCCHHH-----hC---CCCCceEEEECCCchHHHHHHH--------Hh-------CCCCCEEEEEe
Confidence 37888888877776421111 11 2446778999999999998885 22 45667777777
Q ss_pred CCCchHHHHHhCCC---CcccccccCcccccCCCCCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHH
Q 018250 105 TENDFNTLFRTLPP---RKYYAAGVPGSFHGRLFPKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGV 181 (359)
Q Consensus 105 p~NDFn~lf~~l~~---~~~~~~~vpgsfy~~l~p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~ 181 (359)
..+-...+.+.... ....+......+....||++|+|-++-++.=-|-.+-. .|-++. .
T Consensus 380 ~~~~~~~~~~~~~~~~l~N~~~~~~~~~~~~~~~~~~sv~~i~i~FPDPWpKkrh-----------~krRl~----~--- 441 (506)
T PRK01544 380 YLNGVANVLKLAGEQNITNFLLFPNNLDLILNDLPNNSLDGIYILFPDPWIKNKQ-----------KKKRIF----N--- 441 (506)
T ss_pred eHHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHhcCcccccEEEEECCCCCCCCCC-----------cccccc----C---
Confidence 65544443333211 12222111112345668999999999999888832211 011111 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCceeEEEe
Q 018250 182 HETFQAQFRSDFESILNARAEELVPGGLMVFSL 214 (359)
Q Consensus 182 ~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lvl~~ 214 (359)
..||+.-++-|+|||.+.+.+
T Consensus 442 ------------~~fl~~~~~~Lk~gG~i~~~T 462 (506)
T PRK01544 442 ------------KERLKILQDKLKDNGNLVFAS 462 (506)
T ss_pred ------------HHHHHHHHHhcCCCCEEEEEc
Confidence 137778889999999998776
No 139
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=96.29 E-value=0.0079 Score=57.33 Aligned_cols=99 Identities=18% Similarity=0.119 Sum_probs=66.9
Q ss_pred ceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCC----Cc--ccccccCcccc
Q 018250 58 TVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPP----RK--YYAAGVPGSFH 131 (359)
Q Consensus 58 ~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~----~~--~~~~~vpgsfy 131 (359)
...++|.|||-|.-+. ..|...++-.|+.. ..+.. .. ..+ .+.-
T Consensus 46 gsv~~d~gCGngky~~-------------------~~p~~~~ig~D~c~-------~l~~~ak~~~~~~~~~----ad~l 95 (293)
T KOG1331|consen 46 GSVGLDVGCGNGKYLG-------------------VNPLCLIIGCDLCT-------GLLGGAKRSGGDNVCR----ADAL 95 (293)
T ss_pred cceeeecccCCcccCc-------------------CCCcceeeecchhh-------hhccccccCCCceeeh----hhhh
Confidence 5788999999887443 23556677777764 12211 11 111 1445
Q ss_pred cCCCCCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceeE
Q 018250 132 GRLFPKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLMV 211 (359)
Q Consensus 132 ~~l~p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lv 211 (359)
+.++++.|+|.+.|.+.+||||.--. + ...|+--.+.|+|||.+.
T Consensus 96 ~~p~~~~s~d~~lsiavihhlsT~~R----------------------------------R-~~~l~e~~r~lrpgg~~l 140 (293)
T KOG1331|consen 96 KLPFREESFDAALSIAVIHHLSTRER----------------------------------R-ERALEELLRVLRPGGNAL 140 (293)
T ss_pred cCCCCCCccccchhhhhhhhhhhHHH----------------------------------H-HHHHHHHHHHhcCCCceE
Confidence 77899999999999999999985211 0 123555678999999999
Q ss_pred EEeccCCCCC
Q 018250 212 FSLITGPSGI 221 (359)
Q Consensus 212 l~~~g~~~~~ 221 (359)
+...+.....
T Consensus 141 vyvwa~~q~~ 150 (293)
T KOG1331|consen 141 VYVWALEQHQ 150 (293)
T ss_pred EEEehhhccC
Confidence 9998876543
No 140
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=96.28 E-value=0.083 Score=48.86 Aligned_cols=143 Identities=20% Similarity=0.251 Sum_probs=86.4
Q ss_pred CcceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCC----C--cc-------c
Q 018250 56 SYTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPP----R--KY-------Y 122 (359)
Q Consensus 56 ~~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~----~--~~-------~ 122 (359)
....+|++-|||.|.....++ ++ ..+|+..|+...--...|+.... . .. -
T Consensus 36 ~~~~rvLvPgCG~g~D~~~La--------~~---------G~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~ 98 (218)
T PF05724_consen 36 KPGGRVLVPGCGKGYDMLWLA--------EQ---------GHDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGR 98 (218)
T ss_dssp STSEEEEETTTTTSCHHHHHH--------HT---------TEEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSS
T ss_pred CCCCeEEEeCCCChHHHHHHH--------HC---------CCeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCc
Confidence 345799999999999988775 22 36888888887666555554321 0 00 1
Q ss_pred ccccCcccccCCCCC--CceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHH
Q 018250 123 AAGVPGSFHGRLFPK--STLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNAR 200 (359)
Q Consensus 123 ~~~vpgsfy~~l~p~--~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~R 200 (359)
+.-+-|+|++-- |. +++|+|+=.++|+=| | |+.++.|.+ .-
T Consensus 99 i~~~~gDfF~l~-~~~~g~fD~iyDr~~l~Al---p----------------------p~~R~~Ya~-----------~l 141 (218)
T PF05724_consen 99 ITIYCGDFFELP-PEDVGKFDLIYDRTFLCAL---P----------------------PEMRERYAQ-----------QL 141 (218)
T ss_dssp EEEEES-TTTGG-GSCHHSEEEEEECSSTTTS--------------------------GGGHHHHHH-----------HH
T ss_pred eEEEEcccccCC-hhhcCCceEEEEecccccC---C----------------------HHHHHHHHH-----------HH
Confidence 122235777622 22 358999888888763 3 344556665 45
Q ss_pred HHhhccCceeEEEeccCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCChhhhccCCccccCCCHHHHHHHHHhCCceeE
Q 018250 201 AEELVPGGLMVFSLITGPSGIPFADTVQGATYNFLGSCLWDLAKMGVISEEKARTFNVPAYFPYVEELESLIQRNGHFAM 280 (359)
Q Consensus 201 a~EL~pGG~lvl~~~g~~~~~~~~~~~~~~~~~~l~~al~~lv~eGli~~e~~d~f~~P~y~ps~~E~~~~i~~~G~F~i 280 (359)
++-|+|||++++.++-.+... ..-|=|.-+.+||++++. .+ |+|
T Consensus 142 ~~ll~p~g~~lLi~l~~~~~~----------------------------------~~GPPf~v~~~ev~~l~~-~~-f~i 185 (218)
T PF05724_consen 142 ASLLKPGGRGLLITLEYPQGE----------------------------------MEGPPFSVTEEEVRELFG-PG-FEI 185 (218)
T ss_dssp HHCEEEEEEEEEEEEES-CSC----------------------------------SSSSS----HHHHHHHHT-TT-EEE
T ss_pred HHHhCCCCcEEEEEEEcCCcC----------------------------------CCCcCCCCCHHHHHHHhc-CC-cEE
Confidence 788999999555554222110 112335567899999998 55 999
Q ss_pred eEEEEeec
Q 018250 281 ERMQQLDQ 288 (359)
Q Consensus 281 ~~le~~~~ 288 (359)
+.++..+.
T Consensus 186 ~~l~~~~~ 193 (218)
T PF05724_consen 186 EELEEEDS 193 (218)
T ss_dssp EEEEEEE-
T ss_pred EEEecccc
Confidence 99998643
No 141
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=96.18 E-value=0.02 Score=53.52 Aligned_cols=48 Identities=15% Similarity=0.336 Sum_probs=35.7
Q ss_pred CCCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceeEEEe
Q 018250 135 FPKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLMVFSL 214 (359)
Q Consensus 135 ~p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lvl~~ 214 (359)
+-...+|+|+|.+--.| ||....+ .-+.+||+.-++-|.|||+||+.=
T Consensus 162 ~~~~~fDiIlcLSiTkW--------------------IHLNwgD------------~GL~~ff~kis~ll~pgGiLvvEP 209 (288)
T KOG2899|consen 162 MIQPEFDIILCLSITKW--------------------IHLNWGD------------DGLRRFFRKISSLLHPGGILVVEP 209 (288)
T ss_pred hccccccEEEEEEeeee--------------------Eeccccc------------HHHHHHHHHHHHhhCcCcEEEEcC
Confidence 34568899999888888 3322222 247789999999999999999864
No 142
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=96.17 E-value=0.0085 Score=57.02 Aligned_cols=106 Identities=12% Similarity=0.046 Sum_probs=58.2
Q ss_pred cceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCC-------Ccc-cccccCc
Q 018250 57 YTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPP-------RKY-YAAGVPG 128 (359)
Q Consensus 57 ~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~-------~~~-~~~~vpg 128 (359)
++.+|+|+|||+|..+..++. . .+.-++...|+..+.....-+.++. .+. +..+-+.
T Consensus 72 ~p~~VL~iG~G~G~~~~~ll~--------~-------~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~ 136 (270)
T TIGR00417 72 NPKHVLVIGGGDGGVLREVLK--------H-------KSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGF 136 (270)
T ss_pred CCCEEEEEcCCchHHHHHHHh--------C-------CCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchH
Confidence 455999999999997766531 1 1123677777765544433322221 010 1111111
Q ss_pred ccccCCCCCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCc
Q 018250 129 SFHGRLFPKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGG 208 (359)
Q Consensus 129 sfy~~l~p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG 208 (359)
.|..+ .++++|+|++..+-++-. +.. .| ...|++.-++-|+|||
T Consensus 137 ~~l~~--~~~~yDvIi~D~~~~~~~--~~~-------------------------l~-------~~ef~~~~~~~L~pgG 180 (270)
T TIGR00417 137 KFLAD--TENTFDVIIVDSTDPVGP--AET-------------------------LF-------TKEFYELLKKALNEDG 180 (270)
T ss_pred HHHHh--CCCCccEEEEeCCCCCCc--ccc-------------------------hh-------HHHHHHHHHHHhCCCc
Confidence 22222 246888888865543310 000 01 1246777789999999
Q ss_pred eeEEE
Q 018250 209 LMVFS 213 (359)
Q Consensus 209 ~lvl~ 213 (359)
++++.
T Consensus 181 ~lv~~ 185 (270)
T TIGR00417 181 IFVAQ 185 (270)
T ss_pred EEEEc
Confidence 99987
No 143
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=96.13 E-value=0.038 Score=59.70 Aligned_cols=109 Identities=13% Similarity=0.088 Sum_probs=63.8
Q ss_pred ceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCC---C--c-ccccccCcccc
Q 018250 58 TVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPP---R--K-YYAAGVPGSFH 131 (359)
Q Consensus 58 ~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~---~--~-~~~~~vpgsfy 131 (359)
..+|||+|||||..|+.++. . ...+|+..|+........-+++.. . + -|+. ++.+
T Consensus 539 g~rVLDlf~gtG~~sl~aa~--------~--------Ga~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~---~D~~ 599 (702)
T PRK11783 539 GKDFLNLFAYTGTASVHAAL--------G--------GAKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQ---ADCL 599 (702)
T ss_pred CCeEEEcCCCCCHHHHHHHH--------C--------CCCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEE---ccHH
Confidence 36899999999999998852 1 012688888876555444333321 1 1 1222 2332
Q ss_pred ---cCCCCCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCc
Q 018250 132 ---GRLFPKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGG 208 (359)
Q Consensus 132 ---~~l~p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG 208 (359)
.++ .+++|+|++. |+...... ....+ ....+|+..++..-.+-|+|||
T Consensus 600 ~~l~~~--~~~fDlIilD---------PP~f~~~~-------------~~~~~-----~~~~~~y~~l~~~a~~lL~~gG 650 (702)
T PRK11783 600 AWLKEA--REQFDLIFID---------PPTFSNSK-------------RMEDS-----FDVQRDHVALIKDAKRLLRPGG 650 (702)
T ss_pred HHHHHc--CCCcCEEEEC---------CCCCCCCC-------------ccchh-----hhHHHHHHHHHHHHHHHcCCCC
Confidence 222 4689999984 44332100 00001 1234566677877788999999
Q ss_pred eeEEEe
Q 018250 209 LMVFSL 214 (359)
Q Consensus 209 ~lvl~~ 214 (359)
.++++.
T Consensus 651 ~l~~~~ 656 (702)
T PRK11783 651 TLYFSN 656 (702)
T ss_pred EEEEEe
Confidence 998875
No 144
>PLN02366 spermidine synthase
Probab=96.13 E-value=0.014 Score=56.86 Aligned_cols=109 Identities=13% Similarity=0.084 Sum_probs=59.0
Q ss_pred CcceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCC-------Cc-ccccccC
Q 018250 56 SYTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPP-------RK-YYAAGVP 127 (359)
Q Consensus 56 ~~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~-------~~-~~~~~vp 127 (359)
+++.+|+++|||+|.....++ +. ++.-++...|+....-...-+.++. .+ -++.+-+
T Consensus 90 ~~pkrVLiIGgG~G~~~rell--------k~-------~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da 154 (308)
T PLN02366 90 PNPKKVLVVGGGDGGVLREIA--------RH-------SSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDG 154 (308)
T ss_pred CCCCeEEEEcCCccHHHHHHH--------hC-------CCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChH
Confidence 457899999999999766553 11 1123566666665322211111211 11 1233322
Q ss_pred cccccCCCCCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 018250 128 GSFHGRLFPKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPG 207 (359)
Q Consensus 128 gsfy~~l~p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pG 207 (359)
..|.+. .|++++|+|++-.+-+|. .+.. .|. ..|++.-++-|+||
T Consensus 155 ~~~l~~-~~~~~yDvIi~D~~dp~~--~~~~-------------------------L~t-------~ef~~~~~~~L~pg 199 (308)
T PLN02366 155 VEFLKN-APEGTYDAIIVDSSDPVG--PAQE-------------------------LFE-------KPFFESVARALRPG 199 (308)
T ss_pred HHHHhh-ccCCCCCEEEEcCCCCCC--chhh-------------------------hhH-------HHHHHHHHHhcCCC
Confidence 233332 256789999885544441 0110 111 24777778899999
Q ss_pred ceeEEEe
Q 018250 208 GLMVFSL 214 (359)
Q Consensus 208 G~lvl~~ 214 (359)
|+|+...
T Consensus 200 Gvlv~q~ 206 (308)
T PLN02366 200 GVVCTQA 206 (308)
T ss_pred cEEEECc
Confidence 9987653
No 145
>PHA03412 putative methyltransferase; Provisional
Probab=96.11 E-value=0.018 Score=53.89 Aligned_cols=72 Identities=13% Similarity=0.139 Sum_probs=47.1
Q ss_pred ceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCCCcccccccCcccccCCCCC
Q 018250 58 TVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPPRKYYAAGVPGSFHGRLFPK 137 (359)
Q Consensus 58 ~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~~~~~vpgsfy~~l~p~ 137 (359)
..+|+|+|||+|..++.++ +++.. .+..+++.-|+-.+.....-+.++. .-++. ++|....+ +
T Consensus 50 ~grVLDlG~GSG~Lalala--------~~~~~----~~~~~V~aVEID~~Al~~Ar~n~~~-~~~~~---~D~~~~~~-~ 112 (241)
T PHA03412 50 SGSVVDLCAGIGGLSFAMV--------HMMMY----AKPREIVCVELNHTYYKLGKRIVPE-ATWIN---ADALTTEF-D 112 (241)
T ss_pred CCEEEEccChHHHHHHHHH--------Hhccc----CCCcEEEEEECCHHHHHHHHhhccC-CEEEE---cchhcccc-c
Confidence 4699999999999988874 22211 1246899999988776665555432 12222 35644333 5
Q ss_pred CceeEEEec
Q 018250 138 STLHVVNSF 146 (359)
Q Consensus 138 ~s~d~~~S~ 146 (359)
+++|+|+||
T Consensus 113 ~~FDlIIsN 121 (241)
T PHA03412 113 TLFDMAISN 121 (241)
T ss_pred CCccEEEEC
Confidence 799999994
No 146
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=96.11 E-value=0.0087 Score=58.00 Aligned_cols=107 Identities=21% Similarity=0.262 Sum_probs=63.2
Q ss_pred ceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHH---HhCCC-------CcccccccC
Q 018250 58 TVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLF---RTLPP-------RKYYAAGVP 127 (359)
Q Consensus 58 ~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf---~~l~~-------~~~~~~~vp 127 (359)
.-.++|||||-|.--+-.-.. + --+++..|.+.---++.- +.+-. ...|++|
T Consensus 118 ~~~~~~LgCGKGGDLlKw~kA---------g-------I~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~-- 179 (389)
T KOG1975|consen 118 GDDVLDLGCGKGGDLLKWDKA---------G-------IGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAA-- 179 (389)
T ss_pred ccccceeccCCcccHhHhhhh---------c-------ccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEe--
Confidence 345789999999876554211 0 124555555542222221 11111 1234443
Q ss_pred cccccCC-----CCCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 018250 128 GSFHGRL-----FPKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAE 202 (359)
Q Consensus 128 gsfy~~l-----~p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~ 202 (359)
-+|+++| +++-++|++=|=+|+|+.= .+ ..-...+|+.-++
T Consensus 180 Dc~~~~l~d~~e~~dp~fDivScQF~~HYaF------et----------------------------ee~ar~~l~Nva~ 225 (389)
T KOG1975|consen 180 DCFKERLMDLLEFKDPRFDIVSCQFAFHYAF------ET----------------------------EESARIALRNVAK 225 (389)
T ss_pred ccchhHHHHhccCCCCCcceeeeeeeEeeee------cc----------------------------HHHHHHHHHHHHh
Confidence 3566444 3555699999999999821 00 0112357888899
Q ss_pred hhccCceeEEEecc
Q 018250 203 ELVPGGLMVFSLIT 216 (359)
Q Consensus 203 EL~pGG~lvl~~~g 216 (359)
-|+|||.|+-+++.
T Consensus 226 ~LkpGG~FIgTiPd 239 (389)
T KOG1975|consen 226 CLKPGGVFIGTIPD 239 (389)
T ss_pred hcCCCcEEEEecCc
Confidence 99999999999864
No 147
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=96.09 E-value=0.13 Score=46.31 Aligned_cols=19 Identities=32% Similarity=0.380 Sum_probs=15.2
Q ss_pred ceEEEeecCCCCcccHHHH
Q 018250 58 TVRIADLGCSVGPNTFISV 76 (359)
Q Consensus 58 ~~~IaDlGCs~G~nt~~~~ 76 (359)
.-+|+|||||-|..-..+.
T Consensus 68 A~~VlDLGtGNG~~L~~L~ 86 (227)
T KOG1271|consen 68 ADRVLDLGTGNGHLLFQLA 86 (227)
T ss_pred ccceeeccCCchHHHHHHH
Confidence 4499999999998766664
No 148
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=96.07 E-value=0.12 Score=48.14 Aligned_cols=140 Identities=11% Similarity=0.039 Sum_probs=86.7
Q ss_pred cceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCC---------Cccc----c
Q 018250 57 YTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPP---------RKYY----A 123 (359)
Q Consensus 57 ~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~---------~~~~----~ 123 (359)
...||++.|||.|.+..-+++ + ...|+..|+...--...|+...- ...| +
T Consensus 43 ~~~rvLvPgCGkg~D~~~LA~--------~---------G~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i 105 (226)
T PRK13256 43 DSSVCLIPMCGCSIDMLFFLS--------K---------GVKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDI 105 (226)
T ss_pred CCCeEEEeCCCChHHHHHHHh--------C---------CCcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCce
Confidence 347999999999999998852 1 35788889887666666664321 0001 1
Q ss_pred cccCcccccCCCC---CCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHH
Q 018250 124 AGVPGSFHGRLFP---KSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNAR 200 (359)
Q Consensus 124 ~~vpgsfy~~l~p---~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~R 200 (359)
.-+-|+|++.-.+ -+.+|+|+=.++|+=| ||+....|.+ .-
T Consensus 106 ~~~~gD~f~l~~~~~~~~~fD~VyDra~~~Al-------------------------pp~~R~~Y~~-----------~l 149 (226)
T PRK13256 106 EIYVADIFNLPKIANNLPVFDIWYDRGAYIAL-------------------------PNDLRTNYAK-----------MM 149 (226)
T ss_pred EEEEccCcCCCccccccCCcCeeeeehhHhcC-------------------------CHHHHHHHHH-----------HH
Confidence 1123466653221 1457777776666653 3445555554 55
Q ss_pred HHhhccCceeEEEeccCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCChhhhccCCccccCCCHHHHHHHHHhCCceeE
Q 018250 201 AEELVPGGLMVFSLITGPSGIPFADTVQGATYNFLGSCLWDLAKMGVISEEKARTFNVPAYFPYVEELESLIQRNGHFAM 280 (359)
Q Consensus 201 a~EL~pGG~lvl~~~g~~~~~~~~~~~~~~~~~~l~~al~~lv~eGli~~e~~d~f~~P~y~ps~~E~~~~i~~~G~F~i 280 (359)
++-|+|||.+++.++-.+.. ..-|=+.=+.+|+++..... |+|
T Consensus 150 ~~lL~pgg~llll~~~~~~~-----------------------------------~~GPPf~v~~~e~~~lf~~~--~~i 192 (226)
T PRK13256 150 LEVCSNNTQILLLVMEHDKK-----------------------------------SQTPPYSVTQAELIKNFSAK--IKF 192 (226)
T ss_pred HHHhCCCcEEEEEEEecCCC-----------------------------------CCCCCCcCCHHHHHHhccCC--ceE
Confidence 77899999999998732210 01122444578888888644 888
Q ss_pred eEEEEe
Q 018250 281 ERMQQL 286 (359)
Q Consensus 281 ~~le~~ 286 (359)
+.++..
T Consensus 193 ~~l~~~ 198 (226)
T PRK13256 193 ELIDSK 198 (226)
T ss_pred EEeeec
Confidence 777753
No 149
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=96.06 E-value=0.03 Score=52.19 Aligned_cols=111 Identities=14% Similarity=0.216 Sum_probs=67.0
Q ss_pred eEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCCC---cc-cccccCcccccCC
Q 018250 59 VRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPPR---KY-YAAGVPGSFHGRL 134 (359)
Q Consensus 59 ~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~---~~-~~~~vpgsfy~~l 134 (359)
-.++|||||.|...+.++.. .|+.-++.-+.-.+=...+.+.+... .. .+++-.-.+.+.+
T Consensus 50 pi~lEIGfG~G~~l~~~A~~---------------nP~~nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA~~~l~~~ 114 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKK---------------NPEKNFLGIEIRVPGVAKALKKIKELGLKNLRLLCGDAVEVLDYL 114 (227)
T ss_pred cEEEEECCCCCHHHHHHHHH---------------CCCCCEEEEEEehHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHhc
Confidence 57899999999988888632 34445555554443333333322211 11 1222122344667
Q ss_pred CCCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceeEEEe
Q 018250 135 FPKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLMVFSL 214 (359)
Q Consensus 135 ~p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lvl~~ 214 (359)
+|++|+|=++-++.=-|-.+-. +|.+|.. ..||+.-++-|+|||.+.+.+
T Consensus 115 ~~~~sl~~I~i~FPDPWpKkRH-----------~KRRl~~-------------------~~fl~~~a~~Lk~gG~l~~aT 164 (227)
T COG0220 115 IPDGSLDKIYINFPDPWPKKRH-----------HKRRLTQ-------------------PEFLKLYARKLKPGGVLHFAT 164 (227)
T ss_pred CCCCCeeEEEEECCCCCCCccc-----------cccccCC-------------------HHHHHHHHHHccCCCEEEEEe
Confidence 7888999999998888822211 1222211 147888899999999998877
No 150
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=95.97 E-value=0.046 Score=52.66 Aligned_cols=113 Identities=19% Similarity=0.278 Sum_probs=66.6
Q ss_pred cceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCC------------Cccccc
Q 018250 57 YTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPP------------RKYYAA 124 (359)
Q Consensus 57 ~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~------------~~~~~~ 124 (359)
+++||...|||||-=.-.++-.+. +..+.. ...++++..|+..+--...-+.+.+ .+||..
T Consensus 115 ~~irIWSAgCStGEEpYSlAmll~----e~~~~~---~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~ 187 (287)
T PRK10611 115 GEYRVWSAAASTGEEPYSIAMTLA----DTLGTA---PGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMR 187 (287)
T ss_pred CCEEEEEccccCCHHHHHHHHHHH----Hhhccc---CCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHccc
Confidence 469999999999964444432222 222111 1258999999987655544444432 245642
Q ss_pred c---cCc------------ccc--cCC---C-CCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHH
Q 018250 125 G---VPG------------SFH--GRL---F-PKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHE 183 (359)
Q Consensus 125 ~---vpg------------sfy--~~l---~-p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~ 183 (359)
. .+| .|- +.+ + |.+.+|+|+|-+.|..++.
T Consensus 188 ~~~~~~~~~~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF~~----------------------------- 238 (287)
T PRK10611 188 GTGPHEGLVRVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYFDK----------------------------- 238 (287)
T ss_pred ccCCCCceEEEChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHhcCCH-----------------------------
Confidence 1 111 221 111 2 2577888888888777542
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccCceeEE
Q 018250 184 TFQAQFRSDFESILNARAEELVPGGLMVF 212 (359)
Q Consensus 184 ~y~~Q~~~D~~~fL~~Ra~EL~pGG~lvl 212 (359)
.+-...++.-++.|+|||+|++
T Consensus 239 -------~~~~~vl~~l~~~L~pgG~L~l 260 (287)
T PRK10611 239 -------TTQERILRRFVPLLKPDGLLFA 260 (287)
T ss_pred -------HHHHHHHHHHHHHhCCCcEEEE
Confidence 1233466677899999998644
No 151
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=95.90 E-value=0.016 Score=56.82 Aligned_cols=102 Identities=18% Similarity=0.256 Sum_probs=61.1
Q ss_pred ceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCC--CchHHHHHhCCCCcccccccCcccccCCC
Q 018250 58 TVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTE--NDFNTLFRTLPPRKYYAAGVPGSFHGRLF 135 (359)
Q Consensus 58 ~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~--NDFn~lf~~l~~~~~~~~~vpgsfy~~l~ 135 (359)
.-+|+|+|||||-.|+-.+.. . ...|+.-|-.+ +-=.++++.-.-.. -+.-+.|.-.+-.+
T Consensus 61 dK~VlDVGcGtGILS~F~akA--------G--------A~~V~aVe~S~ia~~a~~iv~~N~~~~-ii~vi~gkvEdi~L 123 (346)
T KOG1499|consen 61 DKTVLDVGCGTGILSMFAAKA--------G--------ARKVYAVEASSIADFARKIVKDNGLED-VITVIKGKVEDIEL 123 (346)
T ss_pred CCEEEEcCCCccHHHHHHHHh--------C--------cceEEEEechHHHHHHHHHHHhcCccc-eEEEeecceEEEec
Confidence 468999999999999877532 0 12344443321 00001111100011 12233455556668
Q ss_pred CCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceeE
Q 018250 136 PKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLMV 211 (359)
Q Consensus 136 p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lv 211 (359)
|-..+|+++|-|-=+||- ++.=+...|-+|-+=|+|||.++
T Consensus 124 P~eKVDiIvSEWMGy~Ll-----------------------------------~EsMldsVl~ARdkwL~~~G~i~ 164 (346)
T KOG1499|consen 124 PVEKVDIIVSEWMGYFLL-----------------------------------YESMLDSVLYARDKWLKEGGLIY 164 (346)
T ss_pred CccceeEEeehhhhHHHH-----------------------------------HhhhhhhhhhhhhhccCCCceEc
Confidence 889999999977777753 22335567889999999999875
No 152
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=95.76 E-value=0.026 Score=57.77 Aligned_cols=106 Identities=19% Similarity=0.232 Sum_probs=56.9
Q ss_pred ceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCC--CCcccccccCcccccCCC
Q 018250 58 TVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLP--PRKYYAAGVPGSFHGRLF 135 (359)
Q Consensus 58 ~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~--~~~~~~~~vpgsfy~~l~ 135 (359)
..+|+|+|||+|+.+...++..- +. .-..+||.-.--.|-.-++-+.+. .-.--+.-+.|+. +.+-
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~~----~~-------~~a~~VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~d~-r~v~ 254 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAGA----RA-------GGAVKVYAVEKNPNAVVTLQKRVNANGWGDKVTVIHGDM-REVE 254 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTTH----HH-------CCESEEEEEESSTHHHHHHHHHHHHTTTTTTEEEEES-T-TTSC
T ss_pred ceEEEEeCCCccHHHHHHHHHHH----Hh-------CCCeEEEEEcCCHhHHHHHHHHHHhcCCCCeEEEEeCcc-cCCC
Confidence 57899999999999887754321 11 013577777766555555433211 1000133334455 4454
Q ss_pred CCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceeE
Q 018250 136 PKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLMV 211 (359)
Q Consensus 136 p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lv 211 (359)
++..+|+++| -||- +...|. ..|+ .|.+|.+=|||||+|+
T Consensus 255 lpekvDIIVS----ElLG----------sfg~nE-------l~pE---------------~Lda~~rfLkp~Gi~I 294 (448)
T PF05185_consen 255 LPEKVDIIVS----ELLG----------SFGDNE-------LSPE---------------CLDAADRFLKPDGIMI 294 (448)
T ss_dssp HSS-EEEEEE-------B----------TTBTTT-------SHHH---------------HHHHGGGGEEEEEEEE
T ss_pred CCCceeEEEE----eccC----------Cccccc-------cCHH---------------HHHHHHhhcCCCCEEe
Confidence 5569999999 4442 112222 1222 3567888999999875
No 153
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=95.71 E-value=0.19 Score=44.50 Aligned_cols=37 Identities=19% Similarity=0.092 Sum_probs=28.2
Q ss_pred cceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCC
Q 018250 57 YTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTEN 107 (359)
Q Consensus 57 ~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~N 107 (359)
...+|+|+|||+|..|..++ ++. .+...|+..|+...
T Consensus 23 ~~~~vlDlG~aPGGws~~~~--------~~~------~~~~~v~avDl~~~ 59 (181)
T PF01728_consen 23 KGFTVLDLGAAPGGWSQVLL--------QRG------GPAGRVVAVDLGPM 59 (181)
T ss_dssp TTEEEEEET-TTSHHHHHHH--------TST------TTEEEEEEEESSST
T ss_pred cccEEEEcCCcccceeeeee--------ecc------cccceEEEEecccc
Confidence 57999999999999999885 221 13468999999875
No 154
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=95.68 E-value=0.11 Score=47.99 Aligned_cols=93 Identities=18% Similarity=0.246 Sum_probs=65.4
Q ss_pred CcceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCCCcccccccCcccccCCC
Q 018250 56 SYTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPPRKYYAAGVPGSFHGRLF 135 (359)
Q Consensus 56 ~~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~~~~~vpgsfy~~l~ 135 (359)
...+++||+||=+..|.+.. .+-|.|..-||-+.+ ..+.= -+|.++.+
T Consensus 50 ~~~lrlLEVGals~~N~~s~------------------~~~fdvt~IDLns~~----------~~I~q----qDFm~rpl 97 (219)
T PF11968_consen 50 RPKLRLLEVGALSTDNACST------------------SGWFDVTRIDLNSQH----------PGILQ----QDFMERPL 97 (219)
T ss_pred cccceEEeecccCCCCcccc------------------cCceeeEEeecCCCC----------CCcee----eccccCCC
Confidence 34699999999988877643 235678888887622 11111 28889887
Q ss_pred C---CCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCce---
Q 018250 136 P---KSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGL--- 209 (359)
Q Consensus 136 p---~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~--- 209 (359)
| ++++|+|.+|..|.+ +|.+.. . -.-|+.-.+-|+|+|.
T Consensus 98 p~~~~e~FdvIs~SLVLNf---VP~p~~--------------------R------------G~Ml~r~~~fL~~~g~~~~ 142 (219)
T PF11968_consen 98 PKNESEKFDVISLSLVLNF---VPDPKQ--------------------R------------GEMLRRAHKFLKPPGLSLF 142 (219)
T ss_pred CCCcccceeEEEEEEEEee---CCCHHH--------------------H------------HHHHHHHHHHhCCCCccCc
Confidence 5 889999999999998 564321 1 1245556778899999
Q ss_pred --eEEEec
Q 018250 210 --MVFSLI 215 (359)
Q Consensus 210 --lvl~~~ 215 (359)
|+++++
T Consensus 143 ~~LFlVlP 150 (219)
T PF11968_consen 143 PSLFLVLP 150 (219)
T ss_pred ceEEEEeC
Confidence 888885
No 155
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=95.68 E-value=0.055 Score=52.39 Aligned_cols=94 Identities=16% Similarity=0.153 Sum_probs=52.3
Q ss_pred eEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCC--C--CcccccccCcccccCC
Q 018250 59 VRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLP--P--RKYYAAGVPGSFHGRL 134 (359)
Q Consensus 59 ~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~--~--~~~~~~~vpgsfy~~l 134 (359)
.+|+|+|||||-.++..+ +. . --+|+..|.-..--...-.+.. . .++.+. .. .-
T Consensus 163 ~~vLDvG~GSGILaiaA~--------kl-G-------A~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v~-~~-----~~ 220 (295)
T PF06325_consen 163 KRVLDVGCGSGILAIAAA--------KL-G-------AKKVVAIDIDPLAVEAARENAELNGVEDRIEVS-LS-----ED 220 (295)
T ss_dssp SEEEEES-TTSHHHHHHH--------HT-T-------BSEEEEEESSCHHHHHHHHHHHHTT-TTCEEES-CT-----SC
T ss_pred CEEEEeCCcHHHHHHHHH--------Hc-C-------CCeEEEecCCHHHHHHHHHHHHHcCCCeeEEEE-Ee-----cc
Confidence 599999999999999873 21 1 1368888865432222111110 0 122222 11 11
Q ss_pred CCCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceeEEEe
Q 018250 135 FPKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLMVFSL 214 (359)
Q Consensus 135 ~p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lvl~~ 214 (359)
.+...+|++++|--.+= +........+-|+|||+|+++-
T Consensus 221 ~~~~~~dlvvANI~~~v-----------------------------------------L~~l~~~~~~~l~~~G~lIlSG 259 (295)
T PF06325_consen 221 LVEGKFDLVVANILADV-----------------------------------------LLELAPDIASLLKPGGYLILSG 259 (295)
T ss_dssp TCCS-EEEEEEES-HHH-----------------------------------------HHHHHHHCHHHEEEEEEEEEEE
T ss_pred cccccCCEEEECCCHHH-----------------------------------------HHHHHHHHHHhhCCCCEEEEcc
Confidence 34588999998543222 2223334567789999999976
Q ss_pred c
Q 018250 215 I 215 (359)
Q Consensus 215 ~ 215 (359)
+
T Consensus 260 I 260 (295)
T PF06325_consen 260 I 260 (295)
T ss_dssp E
T ss_pred c
Confidence 5
No 156
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=95.63 E-value=0.24 Score=44.56 Aligned_cols=127 Identities=13% Similarity=0.129 Sum_probs=68.2
Q ss_pred ceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCCCcccccccCcccccCCCCC
Q 018250 58 TVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPPRKYYAAGVPGSFHGRLFPK 137 (359)
Q Consensus 58 ~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~~~~~vpgsfy~~l~p~ 137 (359)
+.-++|+|||||--|-.+++.+. |++..+..|+-.---..-..+...+++-+--|--|+..-|-+
T Consensus 44 ~~i~lEIG~GSGvvstfL~~~i~--------------~~~~~latDiNp~A~~~Tl~TA~~n~~~~~~V~tdl~~~l~~- 108 (209)
T KOG3191|consen 44 PEICLEIGCGSGVVSTFLASVIG--------------PQALYLATDINPEALEATLETARCNRVHIDVVRTDLLSGLRN- 108 (209)
T ss_pred ceeEEEecCCcchHHHHHHHhcC--------------CCceEEEecCCHHHHHHHHHHHHhcCCccceeehhHHhhhcc-
Confidence 56779999999998887764332 456677777743111111111111222222222344444444
Q ss_pred CceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHH--HHHHHHHHHHHHHHHHhhccCceeEEEec
Q 018250 138 STLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQ--AQFRSDFESILNARAEELVPGGLMVFSLI 215 (359)
Q Consensus 138 ~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~--~Q~~~D~~~fL~~Ra~EL~pGG~lvl~~~ 215 (359)
+|+|+..= .|+-+.....+. .......+|+ +-.+.=..+||..--.-|.|.|.+.+...
T Consensus 109 ~~VDvLvf---------NPPYVpt~~~~i----------~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~ 169 (209)
T KOG3191|consen 109 ESVDVLVF---------NPPYVPTSDEEI----------GDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVAL 169 (209)
T ss_pred CCccEEEE---------CCCcCcCCcccc----------hhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeeh
Confidence 88887765 244332211110 0111233444 44444567788877788888888888876
Q ss_pred cCC
Q 018250 216 TGP 218 (359)
Q Consensus 216 g~~ 218 (359)
-++
T Consensus 170 ~~N 172 (209)
T KOG3191|consen 170 RAN 172 (209)
T ss_pred hhc
Confidence 444
No 157
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=95.48 E-value=0.44 Score=45.91 Aligned_cols=60 Identities=20% Similarity=0.324 Sum_probs=40.0
Q ss_pred HHHHHHHhhccCceeEEEeccCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCChhhhccCCccccC--CCHHHHHHHHH
Q 018250 196 ILNARAEELVPGGLMVFSLITGPSGIPFADTVQGATYNFLGSCLWDLAKMGVISEEKARTFNVPAYF--PYVEELESLIQ 273 (359)
Q Consensus 196 fL~~Ra~EL~pGG~lvl~~~g~~~~~~~~~~~~~~~~~~l~~al~~lv~eGli~~e~~d~f~~P~y~--ps~~E~~~~i~ 273 (359)
-|+--+.-|.|||.|+.+.- +- . +-.+.+..+|...- + ..||.+ +|..|..++++
T Consensus 231 sl~gl~~al~pgG~lIyTgQ--Pw-H--------PQle~IAr~LtsHr-~-----------g~~WvMRrRsq~EmD~Lv~ 287 (311)
T PF12147_consen 231 SLAGLARALEPGGYLIYTGQ--PW-H--------PQLEMIARVLTSHR-D-----------GKAWVMRRRSQAEMDQLVE 287 (311)
T ss_pred HHHHHHHHhCCCcEEEEcCC--CC-C--------cchHHHHHHHhccc-C-----------CCceEEEecCHHHHHHHHH
Confidence 46667888999999988752 21 1 11355666655321 1 135655 79999999999
Q ss_pred hCCcee
Q 018250 274 RNGHFA 279 (359)
Q Consensus 274 ~~G~F~ 279 (359)
.+| |+
T Consensus 288 ~aG-F~ 292 (311)
T PF12147_consen 288 AAG-FE 292 (311)
T ss_pred HcC-Cc
Confidence 999 75
No 158
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=95.35 E-value=0.025 Score=51.44 Aligned_cols=117 Identities=18% Similarity=0.317 Sum_probs=58.9
Q ss_pred CcceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCC---------C---Ccccc
Q 018250 56 SYTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLP---------P---RKYYA 123 (359)
Q Consensus 56 ~~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~---------~---~~~~~ 123 (359)
..++||...|||||-=.-.++--+- +..+.. ..-.++++..|+...-....-+.+. . ++||.
T Consensus 30 ~~~lrIWSagCStGeE~YSlAmll~----e~~~~~--~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~ 103 (196)
T PF01739_consen 30 GRPLRIWSAGCSTGEEPYSLAMLLL----ELLPGA--LGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFT 103 (196)
T ss_dssp -S-EEEEETT-TTTHHHHHHHHHHH----HHH-S---TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEE
T ss_pred CCCeEEEECCCCCChhHHHHHHHHH----HHhccc--CCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhcc
Confidence 4689999999999965444432222 211111 1226899999997633332222221 1 24553
Q ss_pred cccCcc------------cc-----cCCCCCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHH
Q 018250 124 AGVPGS------------FH-----GRLFPKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQ 186 (359)
Q Consensus 124 ~~vpgs------------fy-----~~l~p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~ 186 (359)
...++. |- +...|.+.+|+|+|-..|-.++. +
T Consensus 104 ~~~~~~~~v~~~lr~~V~F~~~NL~~~~~~~~~fD~I~CRNVlIYF~~-------------------------~------ 152 (196)
T PF01739_consen 104 ERDGGGYRVKPELRKMVRFRRHNLLDPDPPFGRFDLIFCRNVLIYFDP-------------------------E------ 152 (196)
T ss_dssp EE-CCCTTE-HHHHTTEEEEE--TT-S------EEEEEE-SSGGGS-H-------------------------H------
T ss_pred ccCCCceeEChHHcCceEEEecccCCCCcccCCccEEEecCEEEEeCH-------------------------H------
Confidence 333221 11 22346788999999888877542 1
Q ss_pred HHHHHHHHHHHHHHHHhhccCceeEEEe
Q 018250 187 AQFRSDFESILNARAEELVPGGLMVFSL 214 (359)
Q Consensus 187 ~Q~~~D~~~fL~~Ra~EL~pGG~lvl~~ 214 (359)
.-...++.-++-|+|||.|++.-
T Consensus 153 -----~~~~vl~~l~~~L~pgG~L~lG~ 175 (196)
T PF01739_consen 153 -----TQQRVLRRLHRSLKPGGYLFLGH 175 (196)
T ss_dssp -----HHHHHHHHHGGGEEEEEEEEE-T
T ss_pred -----HHHHHHHHHHHHcCCCCEEEEec
Confidence 11346667789999999987643
No 159
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=95.24 E-value=0.25 Score=47.18 Aligned_cols=114 Identities=25% Similarity=0.409 Sum_probs=67.7
Q ss_pred cceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHh----------CCC---Ccccc
Q 018250 57 YTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRT----------LPP---RKYYA 123 (359)
Q Consensus 57 ~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~----------l~~---~~~~~ 123 (359)
+++||--.|||||-=.-.++-.+.+.... . ....++++..|+-..-....-.. +|. ++||.
T Consensus 96 ~~irIWSaaCStGEEpYSiAm~l~e~~~~----~--~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~ 169 (268)
T COG1352 96 RPIRIWSAACSTGEEPYSLAMLLLEALGK----L--AGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFE 169 (268)
T ss_pred CceEEEecCcCCCccHHHHHHHHHHHhcc----c--cCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEe
Confidence 58999999999997655554333333322 0 23469999999865333322222 222 35666
Q ss_pred cccCcccc--------------cCCC---CCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHH
Q 018250 124 AGVPGSFH--------------GRLF---PKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQ 186 (359)
Q Consensus 124 ~~vpgsfy--------------~~l~---p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~ 186 (359)
-+..|+|- +.+. ..+-+|+|||=..|=++++ +++
T Consensus 170 ~~~~~~y~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCRNVLIYFd~-------------------------~~q---- 220 (268)
T COG1352 170 RGGDGSYRVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCRNVLIYFDE-------------------------ETQ---- 220 (268)
T ss_pred ecCCCcEEEChHHhcccEEeecCCCCCccccCCCCEEEEcceEEeeCH-------------------------HHH----
Confidence 66555332 2222 3355888888666655442 121
Q ss_pred HHHHHHHHHHHHHHHHhhccCceeEE
Q 018250 187 AQFRSDFESILNARAEELVPGGLMVF 212 (359)
Q Consensus 187 ~Q~~~D~~~fL~~Ra~EL~pGG~lvl 212 (359)
.+.++.-+.-|+|||.|++
T Consensus 221 -------~~il~~f~~~L~~gG~Lfl 239 (268)
T COG1352 221 -------ERILRRFADSLKPGGLLFL 239 (268)
T ss_pred -------HHHHHHHHHHhCCCCEEEE
Confidence 2355667889999999865
No 160
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=95.24 E-value=0.22 Score=46.39 Aligned_cols=39 Identities=23% Similarity=0.145 Sum_probs=29.6
Q ss_pred cceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHH
Q 018250 57 YTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNT 111 (359)
Q Consensus 57 ~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~ 111 (359)
...+|+|+|||||..|..++ +. .--+|+..|...++...
T Consensus 75 ~~~~vlDiG~gtG~~t~~l~--------~~--------ga~~v~avD~~~~~l~~ 113 (228)
T TIGR00478 75 KNKIVLDVGSSTGGFTDCAL--------QK--------GAKEVYGVDVGYNQLAE 113 (228)
T ss_pred CCCEEEEcccCCCHHHHHHH--------Hc--------CCCEEEEEeCCHHHHHH
Confidence 45689999999999999885 21 12479999998877654
No 161
>PRK01581 speE spermidine synthase; Validated
Probab=95.19 E-value=0.031 Score=55.53 Aligned_cols=38 Identities=16% Similarity=-0.067 Sum_probs=25.5
Q ss_pred CcceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCc
Q 018250 56 SYTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTEND 108 (359)
Q Consensus 56 ~~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~ND 108 (359)
+++.+||++|||+|.....++ +. .+..++...|+-...
T Consensus 149 ~~PkrVLIIGgGdG~tlrelL--------k~-------~~v~~It~VEIDpeV 186 (374)
T PRK01581 149 IDPKRVLILGGGDGLALREVL--------KY-------ETVLHVDLVDLDGSM 186 (374)
T ss_pred CCCCEEEEECCCHHHHHHHHH--------hc-------CCCCeEEEEeCCHHH
Confidence 456799999999998554443 21 123477888877643
No 162
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=95.12 E-value=0.044 Score=48.66 Aligned_cols=110 Identities=15% Similarity=0.205 Sum_probs=55.7
Q ss_pred CcceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCC------Ccccc--cccC
Q 018250 56 SYTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPP------RKYYA--AGVP 127 (359)
Q Consensus 56 ~~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~------~~~~~--~~vp 127 (359)
....+|++||||+|--++.+... . ....|++.|++. =...+-.++.. .++-+ .-.+
T Consensus 44 ~~~~~VLELGaG~Gl~gi~~a~~--------~-------~~~~Vv~TD~~~-~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg 107 (173)
T PF10294_consen 44 FRGKRVLELGAGTGLPGIAAAKL--------F-------GAARVVLTDYNE-VLELLRRNIELNGSLLDGRVSVRPLDWG 107 (173)
T ss_dssp TTTSEEEETT-TTSHHHHHHHHT----------------T-SEEEEEE-S--HHHHHHHHHHTT--------EEEE--TT
T ss_pred cCCceEEEECCccchhHHHHHhc--------c-------CCceEEEeccch-hhHHHHHHHHhccccccccccCcEEEec
Confidence 34679999999999998888421 1 235899999987 33333333211 11111 1111
Q ss_pred cccccCCCCCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 018250 128 GSFHGRLFPKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPG 207 (359)
Q Consensus 128 gsfy~~l~p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pG 207 (359)
.......+.+.++|+|+.+=++.+ .+.+..+++.-.+-|+|+
T Consensus 108 ~~~~~~~~~~~~~D~IlasDv~Y~--------------------------------------~~~~~~L~~tl~~ll~~~ 149 (173)
T PF10294_consen 108 DELDSDLLEPHSFDVILASDVLYD--------------------------------------EELFEPLVRTLKRLLKPN 149 (173)
T ss_dssp S-HHHHHHS-SSBSEEEEES--S---------------------------------------GGGHHHHHHHHHHHBTT-
T ss_pred CcccccccccccCCEEEEecccch--------------------------------------HHHHHHHHHHHHHHhCCC
Confidence 111122234456777777555554 123344666677889999
Q ss_pred ceeEEEeccCCC
Q 018250 208 GLMVFSLITGPS 219 (359)
Q Consensus 208 G~lvl~~~g~~~ 219 (359)
|.+++...-|..
T Consensus 150 ~~vl~~~~~R~~ 161 (173)
T PF10294_consen 150 GKVLLAYKRRRK 161 (173)
T ss_dssp TTEEEEEE-S-T
T ss_pred CEEEEEeCEecH
Confidence 997777766643
No 163
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=94.99 E-value=0.13 Score=51.96 Aligned_cols=109 Identities=14% Similarity=0.122 Sum_probs=61.2
Q ss_pred ceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCC---C--c-ccccccCcccc
Q 018250 58 TVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPP---R--K-YYAAGVPGSFH 131 (359)
Q Consensus 58 ~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~---~--~-~~~~~vpgsfy 131 (359)
..+|+|+|||+|..++..+ . ....+|+..|+.......+-+++.. . . .++. |+.+
T Consensus 221 g~rVLDlfsgtG~~~l~aa-------~---------~ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~---~D~~ 281 (396)
T PRK15128 221 NKRVLNCFSYTGGFAVSAL-------M---------GGCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVR---DDVF 281 (396)
T ss_pred CCeEEEeccCCCHHHHHHH-------h---------CCCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEE---ccHH
Confidence 3689999999999876542 1 0123778888776554433333211 0 1 1222 2332
Q ss_pred cCC--C--CCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 018250 132 GRL--F--PKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPG 207 (359)
Q Consensus 132 ~~l--~--p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pG 207 (359)
+-+ + ...++|+|++ -|+.... ++ . + .....+++..+++.-.+-|+||
T Consensus 282 ~~l~~~~~~~~~fDlVil---------DPP~f~~------~k---------~---~--l~~~~~~y~~l~~~a~~lLk~g 332 (396)
T PRK15128 282 KLLRTYRDRGEKFDVIVM---------DPPKFVE------NK---------S---Q--LMGACRGYKDINMLAIQLLNPG 332 (396)
T ss_pred HHHHHHHhcCCCCCEEEE---------CCCCCCC------Ch---------H---H--HHHHHHHHHHHHHHHHHHcCCC
Confidence 221 1 2457888886 2332221 00 0 1 1134556777888888899999
Q ss_pred ceeEEEe
Q 018250 208 GLMVFSL 214 (359)
Q Consensus 208 G~lvl~~ 214 (359)
|.+++..
T Consensus 333 G~lv~~s 339 (396)
T PRK15128 333 GILLTFS 339 (396)
T ss_pred eEEEEEe
Confidence 9988655
No 164
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=94.69 E-value=0.13 Score=48.42 Aligned_cols=123 Identities=21% Similarity=0.260 Sum_probs=75.8
Q ss_pred cceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHH-hCCC---CcccccccCccccc
Q 018250 57 YTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFR-TLPP---RKYYAAGVPGSFHG 132 (359)
Q Consensus 57 ~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~-~l~~---~~~~~~~vpgsfy~ 132 (359)
.-.||+|.|.|||..|..++.. . .|.-+|+--|.-. ||-...+ ++.. ..+ +.-.-|+..+
T Consensus 94 pg~rVlEAGtGSG~lt~~La~~-------v-------g~~G~v~tyE~r~-d~~k~A~~Nl~~~~l~d~-v~~~~~Dv~~ 157 (256)
T COG2519 94 PGSRVLEAGTGSGALTAYLARA-------V-------GPEGHVTTYEIRE-DFAKTARENLSEFGLGDR-VTLKLGDVRE 157 (256)
T ss_pred CCCEEEEcccCchHHHHHHHHh-------h-------CCCceEEEEEecH-HHHHHHHHHHHHhccccc-eEEEeccccc
Confidence 3579999999999999988521 1 1344666666665 5554432 2221 111 1111156667
Q ss_pred CCCCCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceeEE
Q 018250 133 RLFPKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLMVF 212 (359)
Q Consensus 133 ~l~p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lvl 212 (359)
-.+++ .+|.+|- ++|. +|| .|..-++.|+|||.+++
T Consensus 158 ~~~~~-~vDav~L--------Dmp~--------PW~---------------------------~le~~~~~Lkpgg~~~~ 193 (256)
T COG2519 158 GIDEE-DVDAVFL--------DLPD--------PWN---------------------------VLEHVSDALKPGGVVVV 193 (256)
T ss_pred ccccc-ccCEEEE--------cCCC--------hHH---------------------------HHHHHHHHhCCCcEEEE
Confidence 77776 8888875 4554 222 57778999999999988
Q ss_pred EeccCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCChhhhc
Q 018250 213 SLITGPSGIPFADTVQGATYNFLGSCLWDLAKMGVISEEKAR 254 (359)
Q Consensus 213 ~~~g~~~~~~~~~~~~~~~~~~l~~al~~lv~eGli~~e~~d 254 (359)
..+. .+.+...+..|-+.|.++.+.++
T Consensus 194 y~P~---------------veQv~kt~~~l~~~g~~~ie~~E 220 (256)
T COG2519 194 YSPT---------------VEQVEKTVEALRERGFVDIEAVE 220 (256)
T ss_pred EcCC---------------HHHHHHHHHHHHhcCccchhhhe
Confidence 8753 34555555665555665554443
No 165
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=94.63 E-value=0.042 Score=51.23 Aligned_cols=36 Identities=11% Similarity=0.091 Sum_probs=27.0
Q ss_pred cceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCC
Q 018250 57 YTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTE 106 (359)
Q Consensus 57 ~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~ 106 (359)
++.+|+|+|||+|..++.++. .. .+..+++..|...
T Consensus 68 ~~~~vLEiGt~~G~s~l~la~--------~~------~~~g~v~tiD~d~ 103 (234)
T PLN02781 68 NAKNTLEIGVFTGYSLLTTAL--------AL------PEDGRITAIDIDK 103 (234)
T ss_pred CCCEEEEecCcccHHHHHHHH--------hC------CCCCEEEEEECCH
Confidence 467999999999999988752 21 2345888888876
No 166
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=94.41 E-value=0.26 Score=48.28 Aligned_cols=64 Identities=14% Similarity=0.213 Sum_probs=41.6
Q ss_pred cceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCC---CcccccccCcccc
Q 018250 57 YTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPP---RKYYAAGVPGSFH 131 (359)
Q Consensus 57 ~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~---~~~~~~~vpgsfy 131 (359)
...+|+|+|||+|.=|..+++.+. +. ...+..+--|+...-.....+.+.. ...-+.++.|+|.
T Consensus 76 ~~~~lIELGsG~~~Kt~~LL~aL~----~~-------~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~ 142 (319)
T TIGR03439 76 SGSMLVELGSGNLRKVGILLEALE----RQ-------KKSVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYD 142 (319)
T ss_pred CCCEEEEECCCchHHHHHHHHHHH----hc-------CCCceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHH
Confidence 345899999999999998875543 11 1246889999987665555555552 1233445555653
No 167
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=94.10 E-value=0.31 Score=47.79 Aligned_cols=104 Identities=22% Similarity=0.251 Sum_probs=61.5
Q ss_pred cceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCCC--cccccccCcccccCC
Q 018250 57 YTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPPR--KYYAAGVPGSFHGRL 134 (359)
Q Consensus 57 ~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~--~~~~~~vpgsfy~~l 134 (359)
....|+|.|||+|..|+-.++.= ...||..... ++-.-.-+.+..+ .--+..+||--.+--
T Consensus 177 ~~kiVlDVGaGSGILS~FAaqAG----------------A~~vYAvEAS-~MAqyA~~Lv~~N~~~~rItVI~GKiEdie 239 (517)
T KOG1500|consen 177 QDKIVLDVGAGSGILSFFAAQAG----------------AKKVYAVEAS-EMAQYARKLVASNNLADRITVIPGKIEDIE 239 (517)
T ss_pred CCcEEEEecCCccHHHHHHHHhC----------------cceEEEEehh-HHHHHHHHHHhcCCccceEEEccCcccccc
Confidence 34678999999999998876431 1133333322 2222222222211 123566788776555
Q ss_pred CCCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceeEEEe
Q 018250 135 FPKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLMVFSL 214 (359)
Q Consensus 135 ~p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lvl~~ 214 (359)
+| +.+|+++| -|-+-. .+| ++=+..+|.+| +=|+|.|.|+=+.
T Consensus 240 LP-Ek~DviIS---------EPMG~m-----L~N---------------------ERMLEsYl~Ar-k~l~P~GkMfPT~ 282 (517)
T KOG1500|consen 240 LP-EKVDVIIS---------EPMGYM-----LVN---------------------ERMLESYLHAR-KWLKPNGKMFPTV 282 (517)
T ss_pred Cc-hhccEEEe---------ccchhh-----hhh---------------------HHHHHHHHHHH-hhcCCCCcccCcc
Confidence 66 67899888 332211 111 24577889999 9999999997655
No 168
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=93.97 E-value=0.062 Score=51.17 Aligned_cols=74 Identities=12% Similarity=0.071 Sum_probs=43.2
Q ss_pred eeccCCCCccchHHhhHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCcceEEEeecCCCCcccHHHHHHHHHHHHHHhh
Q 018250 9 FPMMGGDGTCSYAHNSQFQRGTVDAAKELVREAIVNKLDVGSYGYDNSYTVRIADLGCSVGPNTFISVQNIIEALEFKFQ 88 (359)
Q Consensus 9 ~~M~gG~g~~sY~~nS~~Q~~~~~~~~~~l~~ai~~~~~~~~~~~~~~~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~ 88 (359)
+.|.|=.-..+|.+|-..+..+++.+...+ .. ....+|+|+|||+|..|..+++ ++
T Consensus 9 l~~~~~~~~k~~gq~fl~~~~i~~~i~~~l--------~~-------~~~~~VLEiG~G~G~lt~~L~~--------~~- 64 (272)
T PRK00274 9 LERYGHRAKKSLGQNFLIDENILDKIVDAA--------GP-------QPGDNVLEIGPGLGALTEPLLE--------RA- 64 (272)
T ss_pred HHHcCCCCCcccCcCcCCCHHHHHHHHHhc--------CC-------CCcCeEEEeCCCccHHHHHHHH--------hC-
Confidence 344433334566666555555554433322 11 2346899999999999998853 21
Q ss_pred cCCCCCCCceEEecCCCCCchHHHHH
Q 018250 89 NLSLPVPDFQVFFNDHTENDFNTLFR 114 (359)
Q Consensus 89 ~~~~~~p~~~v~~nDLp~NDFn~lf~ 114 (359)
+ +|+.-|.-......+-+
T Consensus 65 ------~--~v~avE~d~~~~~~~~~ 82 (272)
T PRK00274 65 ------A--KVTAVEIDRDLAPILAE 82 (272)
T ss_pred ------C--cEEEEECCHHHHHHHHH
Confidence 1 66777777655554433
No 169
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=93.95 E-value=0.23 Score=45.24 Aligned_cols=19 Identities=16% Similarity=0.097 Sum_probs=16.0
Q ss_pred ceEEEeecCCCCcccHHHH
Q 018250 58 TVRIADLGCSVGPNTFISV 76 (359)
Q Consensus 58 ~~~IaDlGCs~G~nt~~~~ 76 (359)
..+|+|+|||+|..++.++
T Consensus 54 ~~~vLDl~~GsG~l~l~~l 72 (199)
T PRK10909 54 DARCLDCFAGSGALGLEAL 72 (199)
T ss_pred CCEEEEcCCCccHHHHHHH
Confidence 3589999999999998653
No 170
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=93.76 E-value=0.086 Score=49.96 Aligned_cols=81 Identities=17% Similarity=0.261 Sum_probs=55.9
Q ss_pred ceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceeEEEeccCC
Q 018250 139 TLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLMVFSLITGP 218 (359)
Q Consensus 139 s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lvl~~~g~~ 218 (359)
.+|.+.|++||.=.++-++ .+.+-|+.-..-|||||.|++......
T Consensus 158 ~~D~v~s~fcLE~a~~d~~----------------------------------~y~~al~ni~~lLkpGG~Lil~~~l~~ 203 (256)
T PF01234_consen 158 KFDCVISSFCLESACKDLD----------------------------------EYRRALRNISSLLKPGGHLILAGVLGS 203 (256)
T ss_dssp SEEEEEEESSHHHH-SSHH----------------------------------HHHHHHHHHHTTEEEEEEEEEEEESS-
T ss_pred chhhhhhhHHHHHHcCCHH----------------------------------HHHHHHHHHHHHcCCCcEEEEEEEcCc
Confidence 5999999999988664221 233456677889999999999887554
Q ss_pred CCCCCCCcchhHHHHHHHHHHHHHHHcCCCChhhhccCCccccCCCHHHHHHHHHhCCceeEeEEE
Q 018250 219 SGIPFADTVQGATYNFLGSCLWDLAKMGVISEEKARTFNVPAYFPYVEELESLIQRNGHFAMERMQ 284 (359)
Q Consensus 219 ~~~~~~~~~~~~~~~~l~~al~~lv~eGli~~e~~d~f~~P~y~ps~~E~~~~i~~~G~F~i~~le 284 (359)
+.... ..-.+|...-+.+.++++|+++| |.|...+
T Consensus 204 t~Y~v------------------------------G~~~F~~l~l~ee~v~~al~~aG-~~i~~~~ 238 (256)
T PF01234_consen 204 TYYMV------------------------------GGHKFPCLPLNEEFVREALEEAG-FDIEDLE 238 (256)
T ss_dssp SEEEE------------------------------TTEEEE---B-HHHHHHHHHHTT-EEEEEEE
T ss_pred eeEEE------------------------------CCEecccccCCHHHHHHHHHHcC-CEEEecc
Confidence 42110 11236677789999999999999 9999888
No 171
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=93.68 E-value=4.8 Score=38.54 Aligned_cols=64 Identities=20% Similarity=0.227 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHhhccCceeEEEeccCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCChhhhccCCccccCCCHHHHHH
Q 018250 191 SDFESILNARAEELVPGGLMVFSLITGPSGIPFADTVQGATYNFLGSCLWDLAKMGVISEEKARTFNVPAYFPYVEELES 270 (359)
Q Consensus 191 ~D~~~fL~~Ra~EL~pGG~lvl~~~g~~~~~~~~~~~~~~~~~~l~~al~~lv~eGli~~e~~d~f~~P~y~ps~~E~~~ 270 (359)
+++-.+|..-.+-||||| +...+|.--- +. .++ + + -+-...-.|.||++.
T Consensus 179 ~Ni~~Yi~tI~~lLkpgG--~WIN~GPLly----h~-------------~~~---~-~-------~~~~sveLs~eEi~~ 228 (270)
T PF07942_consen 179 ENIIEYIETIEHLLKPGG--YWINFGPLLY----HF-------------EPM---S-I-------PNEMSVELSLEEIKE 228 (270)
T ss_pred HHHHHHHHHHHHHhccCC--EEEecCCccc----cC-------------CCC---C-C-------CCCcccCCCHHHHHH
Confidence 355668888999999999 3444443210 00 000 0 0 000114578999999
Q ss_pred HHHhCCceeEeEEEE
Q 018250 271 LIQRNGHFAMERMQQ 285 (359)
Q Consensus 271 ~i~~~G~F~i~~le~ 285 (359)
+++.-| |++++-+.
T Consensus 229 l~~~~G-F~~~~~~~ 242 (270)
T PF07942_consen 229 LIEKLG-FEIEKEES 242 (270)
T ss_pred HHHHCC-CEEEEEEE
Confidence 999999 99987666
No 172
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=93.47 E-value=0.13 Score=48.46 Aligned_cols=73 Identities=12% Similarity=-0.024 Sum_probs=45.3
Q ss_pred ceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCC-CcccccccCcccccCCCC
Q 018250 58 TVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPP-RKYYAAGVPGSFHGRLFP 136 (359)
Q Consensus 58 ~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~-~~~~~~~vpgsfy~~l~p 136 (359)
..+|+|+|||+|..|..+++ +. .+++.-|+-......+-+.+.. ..+ .-+-|++.+-.+|
T Consensus 30 ~~~VLEIG~G~G~lt~~L~~--------~~---------~~v~~vEid~~~~~~l~~~~~~~~~v--~ii~~D~~~~~~~ 90 (258)
T PRK14896 30 GDPVLEIGPGKGALTDELAK--------RA---------KKVYAIELDPRLAEFLRDDEIAAGNV--EIIEGDALKVDLP 90 (258)
T ss_pred cCeEEEEeCccCHHHHHHHH--------hC---------CEEEEEECCHHHHHHHHHHhccCCCE--EEEEeccccCCch
Confidence 47899999999999998852 21 2577777766555544443321 111 1122455554444
Q ss_pred CCceeEEEecCcccc
Q 018250 137 KSTLHVVNSFNAMHW 151 (359)
Q Consensus 137 ~~s~d~~~S~~alHW 151 (359)
.+|.++||...++
T Consensus 91 --~~d~Vv~NlPy~i 103 (258)
T PRK14896 91 --EFNKVVSNLPYQI 103 (258)
T ss_pred --hceEEEEcCCccc
Confidence 4689999877765
No 173
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=92.76 E-value=0.55 Score=43.03 Aligned_cols=19 Identities=32% Similarity=0.403 Sum_probs=13.9
Q ss_pred ceEEEeecCCCCcccHHHH
Q 018250 58 TVRIADLGCSVGPNTFISV 76 (359)
Q Consensus 58 ~~~IaDlGCs~G~nt~~~~ 76 (359)
.-+++|||||.|.-.+..+
T Consensus 43 ~dvF~DlGSG~G~~v~~aa 61 (205)
T PF08123_consen 43 DDVFYDLGSGVGNVVFQAA 61 (205)
T ss_dssp T-EEEEES-TTSHHHHHHH
T ss_pred CCEEEECCCCCCHHHHHHH
Confidence 4688999999999776654
No 174
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=92.65 E-value=0.14 Score=49.48 Aligned_cols=20 Identities=25% Similarity=0.207 Sum_probs=17.5
Q ss_pred ceEEEeecCCCCcccHHHHH
Q 018250 58 TVRIADLGCSVGPNTFISVQ 77 (359)
Q Consensus 58 ~~~IaDlGCs~G~nt~~~~~ 77 (359)
..+|+|+|||+|..|..++.
T Consensus 37 ~~~VLEIG~G~G~LT~~Ll~ 56 (294)
T PTZ00338 37 TDTVLEIGPGTGNLTEKLLQ 56 (294)
T ss_pred cCEEEEecCchHHHHHHHHH
Confidence 46899999999999998864
No 175
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=91.98 E-value=0.48 Score=48.35 Aligned_cols=68 Identities=13% Similarity=0.088 Sum_probs=41.0
Q ss_pred ceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCC---Cc-ccccccCccccc-
Q 018250 58 TVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPP---RK-YYAAGVPGSFHG- 132 (359)
Q Consensus 58 ~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~---~~-~~~~~vpgsfy~- 132 (359)
..+|+|+|||+|..|+.++. .. .+|+..|.........-++... .. -|+. +++.+
T Consensus 298 ~~~VLDlgcGtG~~sl~la~--------~~---------~~V~gvD~s~~al~~A~~n~~~~~~~~v~~~~---~d~~~~ 357 (443)
T PRK13168 298 GDRVLDLFCGLGNFTLPLAR--------QA---------AEVVGVEGVEAMVERARENARRNGLDNVTFYH---ANLEED 357 (443)
T ss_pred CCEEEEEeccCCHHHHHHHH--------hC---------CEEEEEeCCHHHHHHHHHHHHHcCCCceEEEE---eChHHh
Confidence 46899999999999998752 11 3677788776665544433211 11 1222 23322
Q ss_pred ---CCCCCCceeEEEe
Q 018250 133 ---RLFPKSTLHVVNS 145 (359)
Q Consensus 133 ---~l~p~~s~d~~~S 145 (359)
..++++++|++++
T Consensus 358 l~~~~~~~~~fD~Vi~ 373 (443)
T PRK13168 358 FTDQPWALGGFDKVLL 373 (443)
T ss_pred hhhhhhhcCCCCEEEE
Confidence 1245678899877
No 176
>PLN02823 spermine synthase
Probab=91.67 E-value=0.56 Score=46.24 Aligned_cols=21 Identities=10% Similarity=0.052 Sum_probs=16.9
Q ss_pred CcceEEEeecCCCCcccHHHH
Q 018250 56 SYTVRIADLGCSVGPNTFISV 76 (359)
Q Consensus 56 ~~~~~IaDlGCs~G~nt~~~~ 76 (359)
+++.+|+.+|+|.|..+..++
T Consensus 102 ~~pk~VLiiGgG~G~~~re~l 122 (336)
T PLN02823 102 PNPKTVFIMGGGEGSTAREVL 122 (336)
T ss_pred CCCCEEEEECCCchHHHHHHH
Confidence 456799999999998776664
No 177
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=91.41 E-value=0.7 Score=43.34 Aligned_cols=20 Identities=15% Similarity=0.069 Sum_probs=17.6
Q ss_pred cceEEEeecCCCCcccHHHH
Q 018250 57 YTVRIADLGCSVGPNTFISV 76 (359)
Q Consensus 57 ~~~~IaDlGCs~G~nt~~~~ 76 (359)
+..+|+|+|||+|..|..+.
T Consensus 29 ~~~~VLEiG~G~G~lt~~L~ 48 (253)
T TIGR00755 29 EGDVVLEIGPGLGALTEPLL 48 (253)
T ss_pred CcCEEEEeCCCCCHHHHHHH
Confidence 35789999999999999885
No 178
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=91.00 E-value=0.27 Score=48.22 Aligned_cols=75 Identities=7% Similarity=0.001 Sum_probs=42.9
Q ss_pred cceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCC-----Ccc--cccccCcc
Q 018250 57 YTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPP-----RKY--YAAGVPGS 129 (359)
Q Consensus 57 ~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~-----~~~--~~~~vpgs 129 (359)
...+|+|||||+|.....+. .+ .+..+++..|+-..-....-+++.. .++ .....++.
T Consensus 114 ~~~~vLDIGtGag~I~~lLa--------~~-------~~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~ 178 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIG--------VH-------EYGWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKA 178 (321)
T ss_pred CCceEEEecCCccHHHHHHH--------hh-------CCCCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhh
Confidence 46899999999997666553 12 1345788888754333332222211 111 12233344
Q ss_pred cccCC-CCCCceeEEEec
Q 018250 130 FHGRL-FPKSTLHVVNSF 146 (359)
Q Consensus 130 fy~~l-~p~~s~d~~~S~ 146 (359)
.+..+ .+.+.+|+++|+
T Consensus 179 i~~~i~~~~~~fDlivcN 196 (321)
T PRK11727 179 IFKGIIHKNERFDATLCN 196 (321)
T ss_pred hhhcccccCCceEEEEeC
Confidence 44433 478899999993
No 179
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=90.96 E-value=6 Score=37.79 Aligned_cols=61 Identities=20% Similarity=0.294 Sum_probs=31.8
Q ss_pred HHHHHHHhhccCceeEEEeccCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCChhhhccCCccccCCCHHHHHHHHHhC
Q 018250 196 ILNARAEELVPGGLMVFSLITGPSGIPFADTVQGATYNFLGSCLWDLAKMGVISEEKARTFNVPAYFPYVEELESLIQRN 275 (359)
Q Consensus 196 fL~~Ra~EL~pGG~lvl~~~g~~~~~~~~~~~~~~~~~~l~~al~~lv~eGli~~e~~d~f~~P~y~ps~~E~~~~i~~~ 275 (359)
.+..-...|.||..|+++-...+.. + ...+.+...+. .-..|.+.+|.+|+...+.
T Consensus 172 iv~~l~d~lapGS~L~ish~t~d~~-p-------~~~~~~~~~~~--------------~~~~~~~~Rs~~ei~~~f~-- 227 (267)
T PF04672_consen 172 IVARLRDALAPGSYLAISHATDDGA-P-------ERAEALEAVYA--------------QAGSPGRPRSREEIAAFFD-- 227 (267)
T ss_dssp HHHHHHCCS-TT-EEEEEEEB-TTS-H-------HHHHHHHHHHH--------------HCCS----B-HHHHHHCCT--
T ss_pred HHHHHHHhCCCCceEEEEecCCCCC-H-------HHHHHHHHHHH--------------cCCCCceecCHHHHHHHcC--
Confidence 3444457899999999999865431 1 01122222222 2356889999999999876
Q ss_pred CceeEe
Q 018250 276 GHFAME 281 (359)
Q Consensus 276 G~F~i~ 281 (359)
| |++.
T Consensus 228 g-~elv 232 (267)
T PF04672_consen 228 G-LELV 232 (267)
T ss_dssp T-SEE-
T ss_pred C-CccC
Confidence 6 7663
No 180
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=90.58 E-value=1.1 Score=35.51 Aligned_cols=24 Identities=29% Similarity=0.364 Sum_probs=19.0
Q ss_pred HHHHHHHhhccCceeEEEeccCCC
Q 018250 196 ILNARAEELVPGGLMVFSLITGPS 219 (359)
Q Consensus 196 fL~~Ra~EL~pGG~lvl~~~g~~~ 219 (359)
.+....+-|+|||.+++.......
T Consensus 137 ~~~~~~~~l~~~g~~~~~~~~~~~ 160 (257)
T COG0500 137 ALRELLRVLKPGGRLVLSDLLRDG 160 (257)
T ss_pred HHHHHHHhcCCCcEEEEEeccCCC
Confidence 455667789999999999987664
No 181
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=90.39 E-value=0.92 Score=43.06 Aligned_cols=96 Identities=16% Similarity=0.290 Sum_probs=57.9
Q ss_pred cceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCCCcccccccCcccccCCCC
Q 018250 57 YTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPPRKYYAAGVPGSFHGRLFP 136 (359)
Q Consensus 57 ~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~~~~~vpgsfy~~l~p 136 (359)
...+++|||.|.|.-|..+. ..+. +|+..++...|=..|-+ +.|=+..+- +..+ -
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~--------~~f~---------~v~aTE~S~~Mr~rL~~----kg~~vl~~~-~w~~---~ 148 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLA--------PLFK---------EVYATEASPPMRWRLSK----KGFTVLDID-DWQQ---T 148 (265)
T ss_pred cCCceEEecCCCcHHHHHHH--------hhcc---------eEEeecCCHHHHHHHHh----CCCeEEehh-hhhc---c
Confidence 46789999999999999884 2221 46666666555333322 111111100 1111 1
Q ss_pred CCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceeEEEec
Q 018250 137 KSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLMVFSLI 215 (359)
Q Consensus 137 ~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lvl~~~ 215 (359)
+..+|+|-|.+-|-=+.+ |. +.|+.-.+.|+|+|++++...
T Consensus 149 ~~~fDvIscLNvLDRc~~-P~-------------------------------------~LL~~i~~~l~p~G~lilAvV 189 (265)
T PF05219_consen 149 DFKFDVISCLNVLDRCDR-PL-------------------------------------TLLRDIRRALKPNGRLILAVV 189 (265)
T ss_pred CCceEEEeehhhhhccCC-HH-------------------------------------HHHHHHHHHhCCCCEEEEEEE
Confidence 346899888776655433 21 356666779999999999875
No 182
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=90.35 E-value=1.8 Score=44.66 Aligned_cols=123 Identities=15% Similarity=0.184 Sum_probs=69.9
Q ss_pred ceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCC---Ccccc-cccCcccccC
Q 018250 58 TVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPP---RKYYA-AGVPGSFHGR 133 (359)
Q Consensus 58 ~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~---~~~~~-~~vpgsfy~~ 133 (359)
..+|+|++||.|.=|..+++ ... .+-.++.||...+-...|-.++.. ..+-+ ..-+..+ ..
T Consensus 114 g~~VLD~CAAPGgKTt~la~--------~l~------~~g~lvA~D~~~~R~~~L~~nl~r~G~~nv~v~~~D~~~~-~~ 178 (470)
T PRK11933 114 PQRVLDMAAAPGSKTTQIAA--------LMN------NQGAIVANEYSASRVKVLHANISRCGVSNVALTHFDGRVF-GA 178 (470)
T ss_pred CCEEEEeCCCccHHHHHHHH--------HcC------CCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCchhhh-hh
Confidence 47899999999999998853 221 123799999988777777666543 11111 1112111 12
Q ss_pred CCCCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHH----HHHHHHHHHHHHHHHHHHHHhhccCce
Q 018250 134 LFPKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVH----ETFQAQFRSDFESILNARAEELVPGGL 209 (359)
Q Consensus 134 l~p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~----~~y~~Q~~~D~~~fL~~Ra~EL~pGG~ 209 (359)
.+| +++|.|.- ++|+.=.. .+ + ..|+.. ...-++..+--..+|..-++-|+|||+
T Consensus 179 ~~~-~~fD~ILv--------DaPCSG~G---------~~--r-k~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~ 237 (470)
T PRK11933 179 ALP-ETFDAILL--------DAPCSGEG---------TV--R-KDPDALKNWSPESNLEIAATQRELIESAFHALKPGGT 237 (470)
T ss_pred hch-hhcCeEEE--------cCCCCCCc---------cc--c-cCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcE
Confidence 233 45777763 34443211 00 0 012221 111222333445788888899999999
Q ss_pred eEEEecc
Q 018250 210 MVFSLIT 216 (359)
Q Consensus 210 lvl~~~g 216 (359)
||-++..
T Consensus 238 LVYSTCT 244 (470)
T PRK11933 238 LVYSTCT 244 (470)
T ss_pred EEEECCC
Confidence 9888754
No 183
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=88.56 E-value=0.57 Score=45.55 Aligned_cols=38 Identities=16% Similarity=0.120 Sum_probs=27.7
Q ss_pred ceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHH
Q 018250 58 TVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTL 112 (359)
Q Consensus 58 ~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~l 112 (359)
..+|+|+|||+|..|+.+++ + ..+|+..|+........
T Consensus 174 ~~~VLDl~cG~G~~sl~la~--------~---------~~~V~gvD~s~~av~~A 211 (315)
T PRK03522 174 PRSMWDLFCGVGGFGLHCAT--------P---------GMQLTGIEISAEAIACA 211 (315)
T ss_pred CCEEEEccCCCCHHHHHHHh--------c---------CCEEEEEeCCHHHHHHH
Confidence 36899999999999988852 1 23778888776555443
No 184
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=88.43 E-value=3 Score=43.41 Aligned_cols=45 Identities=16% Similarity=0.178 Sum_probs=28.8
Q ss_pred cceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCc
Q 018250 57 YTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTEND 108 (359)
Q Consensus 57 ~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~ND 108 (359)
...+|+|.|||+|...+.++..+.. . .....-+..++..|+-..-
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~~~----~---~~~~~~~~~i~g~DId~~a 75 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKNEE----I---NYFKEVELNIYFADIDKTL 75 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHHHh----c---CCcccceeeeeeechhHHH
Confidence 4679999999999998888654321 1 0001124677888875533
No 185
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=88.32 E-value=4.1 Score=38.91 Aligned_cols=80 Identities=14% Similarity=0.102 Sum_probs=42.5
Q ss_pred CcceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhC----CCCcccccccCcccc
Q 018250 56 SYTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTL----PPRKYYAAGVPGSFH 131 (359)
Q Consensus 56 ~~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l----~~~~~~~~~vpgsfy 131 (359)
-.+.+|+|+|||.|.-+... .+.++. -.+++.-|....+ ..+-+.| +.... ......++
T Consensus 32 f~P~~vLD~GsGpGta~wAa--------~~~~~~------~~~~~~vd~s~~~-~~l~~~l~~~~~~~~~--~~~~~~~~ 94 (274)
T PF09243_consen 32 FRPRSVLDFGSGPGTALWAA--------REVWPS------LKEYTCVDRSPEM-LELAKRLLRAGPNNRN--AEWRRVLY 94 (274)
T ss_pred CCCceEEEecCChHHHHHHH--------HHHhcC------ceeeeeecCCHHH-HHHHHHHHhccccccc--chhhhhhh
Confidence 35789999999999755433 344431 2467778865433 3333333 21110 00112333
Q ss_pred cCCCCCCceeEEEecCccccc
Q 018250 132 GRLFPKSTLHVVNSFNAMHWL 152 (359)
Q Consensus 132 ~~l~p~~s~d~~~S~~alHWL 152 (359)
....+-..-|+++++++|-=|
T Consensus 95 ~~~~~~~~~DLvi~s~~L~EL 115 (274)
T PF09243_consen 95 RDFLPFPPDDLVIASYVLNEL 115 (274)
T ss_pred cccccCCCCcEEEEehhhhcC
Confidence 222222233999999998644
No 186
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=87.80 E-value=0.29 Score=44.26 Aligned_cols=20 Identities=20% Similarity=0.197 Sum_probs=16.8
Q ss_pred cceEEEeecCCCCcccHHHH
Q 018250 57 YTVRIADLGCSVGPNTFISV 76 (359)
Q Consensus 57 ~~~~IaDlGCs~G~nt~~~~ 76 (359)
+.-+|+|+|||||..++...
T Consensus 45 ~g~~V~DlG~GTG~La~ga~ 64 (198)
T COG2263 45 EGKTVLDLGAGTGILAIGAA 64 (198)
T ss_pred CCCEEEEcCCCcCHHHHHHH
Confidence 34579999999999998773
No 187
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=87.57 E-value=1.6 Score=41.56 Aligned_cols=52 Identities=23% Similarity=0.347 Sum_probs=42.6
Q ss_pred ceEEEeecCCCCcccHHHHHH------------HHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHH
Q 018250 58 TVRIADLGCSVGPNTFISVQN------------IIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLF 113 (359)
Q Consensus 58 ~~~IaDlGCs~G~nt~~~~~~------------ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf 113 (359)
.-+|+++|+|.|..|..+++. ++..++++.. ....++++..|.-.-||..++
T Consensus 31 ~d~VlEIGpG~GaLT~~Ll~~~~~v~aiEiD~~l~~~L~~~~~----~~~n~~vi~~DaLk~d~~~l~ 94 (259)
T COG0030 31 GDNVLEIGPGLGALTEPLLERAARVTAIEIDRRLAEVLKERFA----PYDNLTVINGDALKFDFPSLA 94 (259)
T ss_pred CCeEEEECCCCCHHHHHHHhhcCeEEEEEeCHHHHHHHHHhcc----cccceEEEeCchhcCcchhhc
Confidence 689999999999999999987 6666666643 245789999999988888765
No 188
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=87.37 E-value=0.94 Score=41.99 Aligned_cols=74 Identities=16% Similarity=0.175 Sum_probs=44.3
Q ss_pred CcceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCC----Ccc-cccccCccc
Q 018250 56 SYTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPP----RKY-YAAGVPGSF 130 (359)
Q Consensus 56 ~~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~----~~~-~~~~vpgsf 130 (359)
.++-+|+++|.+.|..|+.++. .. +.+..++-.|..+......-+.+.. .++ .+.+ |+-
T Consensus 58 ~~~k~iLEiGT~~GySal~mA~--------~l------~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~--gda 121 (219)
T COG4122 58 SGPKRILEIGTAIGYSALWMAL--------AL------PDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLG--GDA 121 (219)
T ss_pred cCCceEEEeecccCHHHHHHHh--------hC------CCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEec--CcH
Confidence 4678999999999999998852 21 1145888888877544443333332 121 1111 333
Q ss_pred ccCC--CCCCceeEEEe
Q 018250 131 HGRL--FPKSTLHVVNS 145 (359)
Q Consensus 131 y~~l--~p~~s~d~~~S 145 (359)
-+.+ +..+++|++|-
T Consensus 122 l~~l~~~~~~~fDliFI 138 (219)
T COG4122 122 LDVLSRLLDGSFDLVFI 138 (219)
T ss_pred HHHHHhccCCCccEEEE
Confidence 3222 45678888875
No 189
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=87.34 E-value=0.85 Score=38.85 Aligned_cols=40 Identities=23% Similarity=0.265 Sum_probs=28.6
Q ss_pred CcceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCC
Q 018250 56 SYTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTE 106 (359)
Q Consensus 56 ~~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~ 106 (359)
....+|+|+|||.|..|+.+.. .+... .+..+|+.-|.-.
T Consensus 24 ~~~~~vvD~GsG~GyLs~~La~--------~l~~~---~~~~~v~~iD~~~ 63 (141)
T PF13679_consen 24 KRCITVVDLGSGKGYLSRALAH--------LLCNS---SPNLRVLGIDCNE 63 (141)
T ss_pred CCCCEEEEeCCChhHHHHHHHH--------HHHhc---CCCCeEEEEECCc
Confidence 4579999999999999999963 11111 2457888888654
No 190
>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3). Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.
Probab=87.30 E-value=0.25 Score=40.73 Aligned_cols=44 Identities=16% Similarity=0.350 Sum_probs=32.4
Q ss_pred eeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceeEEEec
Q 018250 140 LHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLMVFSLI 215 (359)
Q Consensus 140 ~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lvl~~~ 215 (359)
+|+|.|.+...| ||... ...-+..||+.-++-|+|||+|++.--
T Consensus 2 yDvilclSVtkW--------------------IHLn~------------GD~Gl~~~f~~~~~~L~pGG~lilEpQ 45 (110)
T PF06859_consen 2 YDVILCLSVTKW--------------------IHLNW------------GDEGLKRFFRRIYSLLRPGGILILEPQ 45 (110)
T ss_dssp EEEEEEES-HHH--------------------HHHHH------------HHHHHHHHHHHHHHHEEEEEEEEEE--
T ss_pred ccEEEEEEeeEE--------------------EEecC------------cCHHHHHHHHHHHHhhCCCCEEEEeCC
Confidence 699999999999 33222 223477899999999999999999864
No 191
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=87.29 E-value=1.6 Score=43.82 Aligned_cols=70 Identities=10% Similarity=0.023 Sum_probs=44.7
Q ss_pred CccchHHhhHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCcceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCC
Q 018250 16 GTCSYAHNSQFQRGTVDAAKELVREAIVNKLDVGSYGYDNSYTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVP 95 (359)
Q Consensus 16 g~~sY~~nS~~Q~~~~~~~~~~l~~ai~~~~~~~~~~~~~~~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p 95 (359)
+.-.|+-|...-+.+...+...+.. ..+..+|+|++||+|..++.++ ... +
T Consensus 30 ~~vFyqp~~~~nrdl~~~v~~~~~~--------------~~~~~~vLDl~aGsG~~~l~~a--------~~~-------~ 80 (382)
T PRK04338 30 APVFYNPRMELNRDISVLVLRAFGP--------------KLPRESVLDALSASGIRGIRYA--------LET-------G 80 (382)
T ss_pred CCeeeCccccchhhHHHHHHHHHHh--------------hcCCCEEEECCCcccHHHHHHH--------HHC-------C
Confidence 4568888877777655544444321 1124689999999999999884 111 1
Q ss_pred CceEEecCCCCCchHHHHH
Q 018250 96 DFQVFFNDHTENDFNTLFR 114 (359)
Q Consensus 96 ~~~v~~nDLp~NDFn~lf~ 114 (359)
..+|+.+|.-.+-...+-+
T Consensus 81 ~~~V~a~Din~~Av~~a~~ 99 (382)
T PRK04338 81 VEKVTLNDINPDAVELIKK 99 (382)
T ss_pred CCEEEEEeCCHHHHHHHHH
Confidence 2378999987644443333
No 192
>PRK04148 hypothetical protein; Provisional
Probab=86.85 E-value=1.8 Score=37.01 Aligned_cols=20 Identities=15% Similarity=-0.037 Sum_probs=15.3
Q ss_pred cceEEEeecCCCCc-ccHHHH
Q 018250 57 YTVRIADLGCSVGP-NTFISV 76 (359)
Q Consensus 57 ~~~~IaDlGCs~G~-nt~~~~ 76 (359)
+..+|+|+|||+|. .+..+.
T Consensus 16 ~~~kileIG~GfG~~vA~~L~ 36 (134)
T PRK04148 16 KNKKIVELGIGFYFKVAKKLK 36 (134)
T ss_pred cCCEEEEEEecCCHHHHHHHH
Confidence 35789999999996 555553
No 193
>PRK11524 putative methyltransferase; Provisional
Probab=86.84 E-value=1.4 Score=42.13 Aligned_cols=22 Identities=14% Similarity=0.063 Sum_probs=18.8
Q ss_pred HHHHHHHHHHhhccCceeEEEe
Q 018250 193 FESILNARAEELVPGGLMVFSL 214 (359)
Q Consensus 193 ~~~fL~~Ra~EL~pGG~lvl~~ 214 (359)
+..+|..-.+-|||||.|++..
T Consensus 59 l~~~l~~~~rvLK~~G~i~i~~ 80 (284)
T PRK11524 59 LYEWIDECHRVLKKQGTMYIMN 80 (284)
T ss_pred HHHHHHHHHHHhCCCcEEEEEc
Confidence 5678888899999999999864
No 194
>PLN02476 O-methyltransferase
Probab=85.84 E-value=0.9 Score=43.62 Aligned_cols=20 Identities=15% Similarity=0.217 Sum_probs=18.0
Q ss_pred cceEEEeecCCCCcccHHHH
Q 018250 57 YTVRIADLGCSVGPNTFISV 76 (359)
Q Consensus 57 ~~~~IaDlGCs~G~nt~~~~ 76 (359)
++-+|+|+||++|..|+.++
T Consensus 118 ~ak~VLEIGT~tGySal~lA 137 (278)
T PLN02476 118 GAERCIEVGVYTGYSSLAVA 137 (278)
T ss_pred CCCeEEEecCCCCHHHHHHH
Confidence 46799999999999999885
No 195
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=85.32 E-value=0.9 Score=42.86 Aligned_cols=36 Identities=11% Similarity=0.145 Sum_probs=26.1
Q ss_pred cceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCC
Q 018250 57 YTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTE 106 (359)
Q Consensus 57 ~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~ 106 (359)
++-+|+++|+++|..|+.++.. . +++-+++--|...
T Consensus 79 ~ak~iLEiGT~~GySal~la~a--------l------~~~g~v~tiE~~~ 114 (247)
T PLN02589 79 NAKNTMEIGVYTGYSLLATALA--------L------PEDGKILAMDINR 114 (247)
T ss_pred CCCEEEEEeChhhHHHHHHHhh--------C------CCCCEEEEEeCCH
Confidence 4679999999999999988521 1 2345777777754
No 196
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=84.26 E-value=1.6 Score=42.02 Aligned_cols=131 Identities=12% Similarity=0.170 Sum_probs=62.2
Q ss_pred CcceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHh--CCC--CcccccccCcc-c
Q 018250 56 SYTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRT--LPP--RKYYAAGVPGS-F 130 (359)
Q Consensus 56 ~~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~--l~~--~~~~~~~vpgs-f 130 (359)
....+|+|-.||+|..-+..+..+.+.-.+ .++.+++..|+-.......-.. +.. ...+- ...++ |
T Consensus 45 ~~~~~VlDPacGsG~fL~~~~~~i~~~~~~--------~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~~~~-i~~~d~l 115 (311)
T PF02384_consen 45 KKGDSVLDPACGSGGFLVAAMEYIKEKRNK--------IKEINIYGIEIDPEAVALAKLNLLLHGIDNSNIN-IIQGDSL 115 (311)
T ss_dssp -TTEEEEETT-TTSHHHHHHHHHHHTCHHH--------HCCEEEEEEES-HHHHHHHHHHHHHTTHHCBGCE-EEES-TT
T ss_pred cccceeechhhhHHHHHHHHHHhhcccccc--------cccceeEeecCcHHHHHHHHhhhhhhcccccccc-ccccccc
Confidence 346789999999999888776554432111 2467899888854332211111 111 11000 11123 3
Q ss_pred ccCCCC-CCceeEEEecCc--cc-ccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 018250 131 HGRLFP-KSTLHVVNSFNA--MH-WLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVP 206 (359)
Q Consensus 131 y~~l~p-~~s~d~~~S~~a--lH-WLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~p 206 (359)
....+. ...+|+|+++-- .. | ........ .-|.++ .++.. ..|+ .|+..--+-|++
T Consensus 116 ~~~~~~~~~~~D~ii~NPPf~~~~~---~~~~~~~~--~~~~~~------~~~~~--------~~~~-~Fi~~~l~~Lk~ 175 (311)
T PF02384_consen 116 ENDKFIKNQKFDVIIGNPPFGSKEW---KDEELEKD--ERFKKY------FPPKS--------NAEY-AFIEHALSLLKP 175 (311)
T ss_dssp TSHSCTST--EEEEEEE--CTCES----STGGGCTT--CCCTTC------SSSTT--------EHHH-HHHHHHHHTEEE
T ss_pred cccccccccccccccCCCCcccccc---cccccccc--cccccc------CCCcc--------chhh-hhHHHHHhhccc
Confidence 233333 678999999621 11 3 00001000 001111 11110 1122 278888899999
Q ss_pred CceeEEEec
Q 018250 207 GGLMVFSLI 215 (359)
Q Consensus 207 GG~lvl~~~ 215 (359)
||++++.++
T Consensus 176 ~G~~~~Ilp 184 (311)
T PF02384_consen 176 GGRAAIILP 184 (311)
T ss_dssp EEEEEEEEE
T ss_pred ccceeEEec
Confidence 999999886
No 197
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=82.60 E-value=3.6 Score=38.86 Aligned_cols=21 Identities=19% Similarity=0.260 Sum_probs=15.6
Q ss_pred ceEEEeecCCCCcccHHHHHH
Q 018250 58 TVRIADLGCSVGPNTFISVQN 78 (359)
Q Consensus 58 ~~~IaDlGCs~G~nt~~~~~~ 78 (359)
-.+|++-|.|+|..|..++..
T Consensus 41 G~~VlEaGtGSG~lt~~l~r~ 61 (247)
T PF08704_consen 41 GSRVLEAGTGSGSLTHALARA 61 (247)
T ss_dssp T-EEEEE--TTSHHHHHHHHH
T ss_pred CCEEEEecCCcHHHHHHHHHH
Confidence 579999999999999999743
No 198
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=81.68 E-value=1.9 Score=42.95 Aligned_cols=102 Identities=18% Similarity=0.237 Sum_probs=63.2
Q ss_pred eEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCC------CcccccccCccccc
Q 018250 59 VRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPP------RKYYAAGVPGSFHG 132 (359)
Q Consensus 59 ~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~------~~~~~~~vpgsfy~ 132 (359)
..++|+||+-|+-+..+. .++. .++ .|+-.|.+.-.-...-. +.+.. +-+.|-+
T Consensus 112 ~~~~~~~~g~~~~~~~i~---------~f~~-------~~~--~Gl~~n~~e~~~~~~~~~~~~l~~k~~~--~~~~~~~ 171 (364)
T KOG1269|consen 112 SKVLDVGTGVGGPSRYIA---------VFKK-------AGV--VGLDNNAYEAFRANELAKKAYLDNKCNF--VVADFGK 171 (364)
T ss_pred ccccccCcCcCchhHHHH---------Hhcc-------CCc--cCCCcCHHHHHHHHHHHHHHHhhhhcce--ehhhhhc
Confidence 378999999999888772 2221 122 34444554322111111 12222 4458888
Q ss_pred CCCCCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceeEE
Q 018250 133 RLFPKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLMVF 212 (359)
Q Consensus 133 ~l~p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lvl 212 (359)
.+|+++.+|++.+.-+.+..++ -.++|+++ .+.++|||+++.
T Consensus 172 ~~fedn~fd~v~~ld~~~~~~~--------------------------~~~~y~Ei------------~rv~kpGG~~i~ 213 (364)
T KOG1269|consen 172 MPFEDNTFDGVRFLEVVCHAPD--------------------------LEKVYAEI------------YRVLKPGGLFIV 213 (364)
T ss_pred CCCCccccCcEEEEeecccCCc--------------------------HHHHHHHH------------hcccCCCceEEe
Confidence 8999999999999888777443 12344443 356999999998
Q ss_pred EeccCC
Q 018250 213 SLITGP 218 (359)
Q Consensus 213 ~~~g~~ 218 (359)
.-..+.
T Consensus 214 ~e~i~~ 219 (364)
T KOG1269|consen 214 KEWIKT 219 (364)
T ss_pred HHHHHh
Confidence 776443
No 199
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=80.45 E-value=4.2 Score=41.18 Aligned_cols=19 Identities=26% Similarity=0.305 Sum_probs=17.0
Q ss_pred ceEEEeecCCCCcccHHHH
Q 018250 58 TVRIADLGCSVGPNTFISV 76 (359)
Q Consensus 58 ~~~IaDlGCs~G~nt~~~~ 76 (359)
..+|+|+|||+|..|+.+.
T Consensus 293 ~~~vLDl~cG~G~~sl~la 311 (431)
T TIGR00479 293 EELVVDAYCGVGTFTLPLA 311 (431)
T ss_pred CCEEEEcCCCcCHHHHHHH
Confidence 4689999999999999885
No 200
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=78.93 E-value=15 Score=34.13 Aligned_cols=19 Identities=21% Similarity=0.144 Sum_probs=16.3
Q ss_pred ceEEEeecCCCCcccHHHH
Q 018250 58 TVRIADLGCSVGPNTFISV 76 (359)
Q Consensus 58 ~~~IaDlGCs~G~nt~~~~ 76 (359)
-.+.||+|+|||..|-.+.
T Consensus 83 G~s~LdvGsGSGYLt~~~~ 101 (237)
T KOG1661|consen 83 GASFLDVGSGSGYLTACFA 101 (237)
T ss_pred CcceeecCCCccHHHHHHH
Confidence 4778999999999998765
No 201
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=77.35 E-value=7.3 Score=35.50 Aligned_cols=22 Identities=23% Similarity=0.268 Sum_probs=18.1
Q ss_pred CcceEEEeecCCCCcccHHHHH
Q 018250 56 SYTVRIADLGCSVGPNTFISVQ 77 (359)
Q Consensus 56 ~~~~~IaDlGCs~G~nt~~~~~ 77 (359)
..-.+|+|+||+.|.-|...++
T Consensus 68 ~p~~~VlD~G~APGsWsQVavq 89 (232)
T KOG4589|consen 68 RPEDTVLDCGAAPGSWSQVAVQ 89 (232)
T ss_pred CCCCEEEEccCCCChHHHHHHH
Confidence 3468999999999998887753
No 202
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=77.32 E-value=2.9 Score=41.77 Aligned_cols=18 Identities=28% Similarity=0.372 Sum_probs=16.3
Q ss_pred eEEEeecCCCCcccHHHH
Q 018250 59 VRIADLGCSVGPNTFISV 76 (359)
Q Consensus 59 ~~IaDlGCs~G~nt~~~~ 76 (359)
.+|+|+|||+|..|+.++
T Consensus 235 ~~vLDL~cG~G~~~l~la 252 (374)
T TIGR02085 235 TQMWDLFCGVGGFGLHCA 252 (374)
T ss_pred CEEEEccCCccHHHHHHh
Confidence 589999999999999885
No 203
>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]
Probab=76.26 E-value=66 Score=31.70 Aligned_cols=66 Identities=20% Similarity=0.220 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHhhccCceeEEEeccCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCChhhhccCCccccCCCHHHHHHH
Q 018250 192 DFESILNARAEELVPGGLMVFSLITGPSGIPFADTVQGATYNFLGSCLWDLAKMGVISEEKARTFNVPAYFPYVEELESL 271 (359)
Q Consensus 192 D~~~fL~~Ra~EL~pGG~lvl~~~g~~~~~~~~~~~~~~~~~~l~~al~~lv~eGli~~e~~d~f~~P~y~ps~~E~~~~ 271 (359)
..-.+|..-.+-|||||..+ .+|.---...+ + .| .-+-+..-+|.+++..+
T Consensus 274 NileYi~tI~~iLk~GGvWi--NlGPLlYHF~d-~------------------~g--------~~~~~siEls~edl~~v 324 (369)
T KOG2798|consen 274 NILEYIDTIYKILKPGGVWI--NLGPLLYHFED-T------------------HG--------VENEMSIELSLEDLKRV 324 (369)
T ss_pred HHHHHHHHHHHhccCCcEEE--eccceeeeccC-C------------------CC--------CcccccccccHHHHHHH
Confidence 34458888999999999853 34432100000 0 01 12334567889999999
Q ss_pred HHhCCceeEeEEEEee
Q 018250 272 IQRNGHFAMERMQQLD 287 (359)
Q Consensus 272 i~~~G~F~i~~le~~~ 287 (359)
...-| |++++=+.++
T Consensus 325 ~~~~G-F~~~ke~~Id 339 (369)
T KOG2798|consen 325 ASHRG-FEVEKERGID 339 (369)
T ss_pred HHhcC-cEEEEeeeee
Confidence 99999 9998888663
No 204
>PRK13699 putative methylase; Provisional
Probab=74.54 E-value=5.8 Score=36.82 Aligned_cols=21 Identities=24% Similarity=0.107 Sum_probs=16.4
Q ss_pred HHHHHHHHHhhccCceeEEEe
Q 018250 194 ESILNARAEELVPGGLMVFSL 214 (359)
Q Consensus 194 ~~fL~~Ra~EL~pGG~lvl~~ 214 (359)
..+|+.-++.|||||.|++.+
T Consensus 52 ~~~l~E~~RVLKpgg~l~if~ 72 (227)
T PRK13699 52 QPACNEMYRVLKKDALMVSFY 72 (227)
T ss_pred HHHHHHHHHHcCCCCEEEEEe
Confidence 466777789999999987643
No 205
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=73.80 E-value=3.2 Score=37.35 Aligned_cols=42 Identities=12% Similarity=0.059 Sum_probs=28.5
Q ss_pred ceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHh
Q 018250 58 TVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRT 115 (359)
Q Consensus 58 ~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~ 115 (359)
..+++|++||+|..++.+++ +. .-.|++.|....-...+-++
T Consensus 50 g~~vLDLfaGsG~lglea~s--------rg--------a~~v~~vE~~~~a~~~~~~N 91 (189)
T TIGR00095 50 GAHLLDVFAGSGLLGEEALS--------RG--------AKVAFLEEDDRKANQTLKEN 91 (189)
T ss_pred CCEEEEecCCCcHHHHHHHh--------CC--------CCEEEEEeCCHHHHHHHHHH
Confidence 36899999999999998852 21 12677777766554444443
No 206
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=73.67 E-value=3.4 Score=38.79 Aligned_cols=38 Identities=21% Similarity=0.152 Sum_probs=28.8
Q ss_pred CcceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCch
Q 018250 56 SYTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDF 109 (359)
Q Consensus 56 ~~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDF 109 (359)
.+..+++|+|+|||..|.-+++ +- --.||.-|.-.|-.
T Consensus 78 ~k~kv~LDiGsSTGGFTd~lLq--------~g--------Ak~VyavDVG~~Ql 115 (245)
T COG1189 78 VKGKVVLDIGSSTGGFTDVLLQ--------RG--------AKHVYAVDVGYGQL 115 (245)
T ss_pred CCCCEEEEecCCCccHHHHHHH--------cC--------CcEEEEEEccCCcc
Confidence 5568899999999999998852 21 23788888877654
No 207
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=72.25 E-value=12 Score=35.36 Aligned_cols=22 Identities=14% Similarity=0.072 Sum_probs=19.3
Q ss_pred cceEEEeecCCCCcccHHHHHH
Q 018250 57 YTVRIADLGCSVGPNTFISVQN 78 (359)
Q Consensus 57 ~~~~IaDlGCs~G~nt~~~~~~ 78 (359)
+...|+|+|.|.|..|..+.+.
T Consensus 30 ~~~~VlEiGpG~G~lT~~L~~~ 51 (262)
T PF00398_consen 30 EGDTVLEIGPGPGALTRELLKR 51 (262)
T ss_dssp TTSEEEEESSTTSCCHHHHHHH
T ss_pred CCCEEEEeCCCCccchhhHhcc
Confidence 4688999999999999999754
No 208
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=72.19 E-value=8.2 Score=38.33 Aligned_cols=19 Identities=21% Similarity=0.286 Sum_probs=16.3
Q ss_pred eEEEeecCCCCcccHHHHH
Q 018250 59 VRIADLGCSVGPNTFISVQ 77 (359)
Q Consensus 59 ~~IaDlGCs~G~nt~~~~~ 77 (359)
.+|+|++||+|..|+.+..
T Consensus 208 ~~vLDl~~G~G~~sl~la~ 226 (362)
T PRK05031 208 GDLLELYCGNGNFTLALAR 226 (362)
T ss_pred CeEEEEeccccHHHHHHHh
Confidence 4699999999999997753
No 209
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=72.09 E-value=5.7 Score=33.14 Aligned_cols=41 Identities=15% Similarity=0.210 Sum_probs=27.5
Q ss_pred EEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHh
Q 018250 60 RIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRT 115 (359)
Q Consensus 60 ~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~ 115 (359)
+|+|+||+.|..|+.+. +.+ |..+++.-|.-...+..+-+.
T Consensus 1 ~vlDiGa~~G~~~~~~~--------~~~-------~~~~v~~~E~~~~~~~~l~~~ 41 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFA--------RKG-------AEGRVIAFEPLPDAYEILEEN 41 (143)
T ss_pred CEEEccCCccHHHHHHH--------HhC-------CCCEEEEEecCHHHHHHHHHH
Confidence 48999999999988774 222 233677777666566555444
No 210
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=71.70 E-value=4.8 Score=37.85 Aligned_cols=109 Identities=15% Similarity=0.163 Sum_probs=58.6
Q ss_pred CcceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCC-CCccc---ccccCcccc
Q 018250 56 SYTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLP-PRKYY---AAGVPGSFH 131 (359)
Q Consensus 56 ~~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~-~~~~~---~~~vpgsfy 131 (359)
.+-.+|+|-=.|=|..++..+ ++-. +.|+--.--.|- -.|.+.-| ++..| +--+.|+.|
T Consensus 133 ~~G~rVLDtC~GLGYtAi~a~--------~rGA--------~~VitvEkdp~V-LeLa~lNPwSr~l~~~~i~iilGD~~ 195 (287)
T COG2521 133 KRGERVLDTCTGLGYTAIEAL--------ERGA--------IHVITVEKDPNV-LELAKLNPWSRELFEIAIKIILGDAY 195 (287)
T ss_pred ccCCEeeeeccCccHHHHHHH--------HcCC--------cEEEEEeeCCCe-EEeeccCCCCccccccccEEecccHH
Confidence 346899999999999988774 2211 011111100000 01111111 01112 233467888
Q ss_pred cCC--CCCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCce
Q 018250 132 GRL--FPKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGL 209 (359)
Q Consensus 132 ~~l--~p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~ 209 (359)
+-+ |+++|+|+++- + |+-+.- ..+.|++- |-+--++-|+|||+
T Consensus 196 e~V~~~~D~sfDaIiH--------D-PPRfS~-------------------AgeLYsee-------fY~El~RiLkrgGr 240 (287)
T COG2521 196 EVVKDFDDESFDAIIH--------D-PPRFSL-------------------AGELYSEE-------FYRELYRILKRGGR 240 (287)
T ss_pred HHHhcCCccccceEee--------C-CCccch-------------------hhhHhHHH-------HHHHHHHHcCcCCc
Confidence 766 99999999975 3 332211 12445542 33444677899999
Q ss_pred eEEEecc
Q 018250 210 MVFSLIT 216 (359)
Q Consensus 210 lvl~~~g 216 (359)
|+=-...
T Consensus 241 lFHYvG~ 247 (287)
T COG2521 241 LFHYVGN 247 (287)
T ss_pred EEEEeCC
Confidence 9766643
No 211
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=67.61 E-value=24 Score=35.06 Aligned_cols=132 Identities=19% Similarity=0.182 Sum_probs=75.5
Q ss_pred ceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCC---CcccccccCcccccCC
Q 018250 58 TVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPP---RKYYAAGVPGSFHGRL 134 (359)
Q Consensus 58 ~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~---~~~~~~~vpgsfy~~l 134 (359)
..+|+|+=.+.|.=|..+++. .. .....|+.+|....-...|..++.. ..+=+.-..++.+...
T Consensus 157 ge~VlD~cAAPGGKTthla~~--------~~-----~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~nv~~~~~d~~~~~~~ 223 (355)
T COG0144 157 GERVLDLCAAPGGKTTHLAEL--------ME-----NEGAIVVAVDVSPKRLKRLRENLKRLGVRNVIVVNKDARRLAEL 223 (355)
T ss_pred cCEEEEECCCCCCHHHHHHHh--------cC-----CCCceEEEEcCCHHHHHHHHHHHHHcCCCceEEEeccccccccc
Confidence 489999999999999888532 11 1235689999998888888777653 2211111122223333
Q ss_pred CCCC-ceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceeEEE
Q 018250 135 FPKS-TLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLMVFS 213 (359)
Q Consensus 135 ~p~~-s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lvl~ 213 (359)
.+.. .+|-|.- +.|+.-..... .+=.+.-..++..+.+ ..+--..+|..-.+-|||||+||-+
T Consensus 224 ~~~~~~fD~iLl--------DaPCSg~G~ir---r~Pd~~~~~~~~~i~~-----l~~lQ~~iL~~a~~~lk~GG~LVYS 287 (355)
T COG0144 224 LPGGEKFDRILL--------DAPCSGTGVIR---RDPDVKWRRTPEDIAE-----LAKLQKEILAAALKLLKPGGVLVYS 287 (355)
T ss_pred ccccCcCcEEEE--------CCCCCCCcccc---cCccccccCCHHHHHH-----HHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 3333 4777765 56665332110 0000111112222222 2223346888888999999999999
Q ss_pred eccCC
Q 018250 214 LITGP 218 (359)
Q Consensus 214 ~~g~~ 218 (359)
+....
T Consensus 288 TCS~~ 292 (355)
T COG0144 288 TCSLT 292 (355)
T ss_pred ccCCc
Confidence 86543
No 212
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=67.03 E-value=6.5 Score=38.94 Aligned_cols=17 Identities=18% Similarity=0.335 Sum_probs=15.4
Q ss_pred EEEeecCCCCcccHHHH
Q 018250 60 RIADLGCSVGPNTFISV 76 (359)
Q Consensus 60 ~IaDlGCs~G~nt~~~~ 76 (359)
+|+|+|||+|..|+.+.
T Consensus 200 ~vlDl~~G~G~~sl~la 216 (353)
T TIGR02143 200 DLLELYCGNGNFSLALA 216 (353)
T ss_pred cEEEEeccccHHHHHHH
Confidence 69999999999999774
No 213
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=63.46 E-value=5.4 Score=37.68 Aligned_cols=36 Identities=17% Similarity=0.269 Sum_probs=23.8
Q ss_pred CcceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCC
Q 018250 56 SYTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTE 106 (359)
Q Consensus 56 ~~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~ 106 (359)
+.+-+|+|||||--|.++-.| ...|.+.++..|+-.
T Consensus 104 ~~p~sVlDigCGlNPlalp~~---------------~~~~~a~Y~a~DID~ 139 (251)
T PF07091_consen 104 PPPDSVLDIGCGLNPLALPWM---------------PEAPGATYIAYDIDS 139 (251)
T ss_dssp ---SEEEEET-TTCHHHHHTT---------------TSSTT-EEEEEESBH
T ss_pred CCCchhhhhhccCCceehhhc---------------ccCCCcEEEEEeCCH
Confidence 448899999999998888664 124567888888754
No 214
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=62.30 E-value=40 Score=36.62 Aligned_cols=20 Identities=15% Similarity=0.174 Sum_probs=16.9
Q ss_pred ceEEEeecCCCCcccHHHHH
Q 018250 58 TVRIADLGCSVGPNTFISVQ 77 (359)
Q Consensus 58 ~~~IaDlGCs~G~nt~~~~~ 77 (359)
...++|-+||+|...+..+.
T Consensus 191 ~~~l~DP~CGSGTilIEAa~ 210 (702)
T PRK11783 191 GTPLLDPMCGSGTLLIEAAM 210 (702)
T ss_pred CCeEEccCCCccHHHHHHHH
Confidence 47899999999998887754
No 215
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=60.70 E-value=4.2 Score=37.41 Aligned_cols=18 Identities=33% Similarity=0.562 Sum_probs=14.9
Q ss_pred ceEEEeecCCCCcccHHH
Q 018250 58 TVRIADLGCSVGPNTFIS 75 (359)
Q Consensus 58 ~~~IaDlGCs~G~nt~~~ 75 (359)
..-+||||||=|...+.+
T Consensus 61 kvefaDIGCGyGGLlv~L 78 (249)
T KOG3115|consen 61 KVEFADIGCGYGGLLMKL 78 (249)
T ss_pred cceEEeeccCccchhhhc
Confidence 467999999999877665
No 216
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=60.19 E-value=5.9 Score=34.65 Aligned_cols=20 Identities=25% Similarity=0.419 Sum_probs=16.1
Q ss_pred CcceEEEeecCCCCcccHHH
Q 018250 56 SYTVRIADLGCSVGPNTFIS 75 (359)
Q Consensus 56 ~~~~~IaDlGCs~G~nt~~~ 75 (359)
-+.-+++|||||+|-.++..
T Consensus 47 iEgkkl~DLgcgcGmLs~a~ 66 (185)
T KOG3420|consen 47 IEGKKLKDLGCGCGMLSIAF 66 (185)
T ss_pred ccCcchhhhcCchhhhHHHh
Confidence 34578999999999988654
No 217
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=59.90 E-value=5.2 Score=33.00 Aligned_cols=21 Identities=29% Similarity=0.407 Sum_probs=16.7
Q ss_pred CcceEEEeecCCCCcccHHHH
Q 018250 56 SYTVRIADLGCSVGPNTFISV 76 (359)
Q Consensus 56 ~~~~~IaDlGCs~G~nt~~~~ 76 (359)
..+...+|+|||-|-..-.+.
T Consensus 57 ~~~~~FVDlGCGNGLLV~IL~ 77 (112)
T PF07757_consen 57 QKFQGFVDLGCGNGLLVYILN 77 (112)
T ss_pred CCCCceEEccCCchHHHHHHH
Confidence 356789999999998777664
No 218
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=57.93 E-value=54 Score=29.66 Aligned_cols=22 Identities=18% Similarity=0.181 Sum_probs=18.8
Q ss_pred cceEEEeecCCCCcccHHHHHH
Q 018250 57 YTVRIADLGCSVGPNTFISVQN 78 (359)
Q Consensus 57 ~~~~IaDlGCs~G~nt~~~~~~ 78 (359)
..-+++|+=+|||..++..++.
T Consensus 43 ~g~~~LDlFAGSGaLGlEAlSR 64 (187)
T COG0742 43 EGARVLDLFAGSGALGLEALSR 64 (187)
T ss_pred CCCEEEEecCCccHhHHHHHhC
Confidence 3578999999999999988754
No 219
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=57.38 E-value=36 Score=33.76 Aligned_cols=111 Identities=18% Similarity=0.181 Sum_probs=66.5
Q ss_pred ceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCC---CcccccccCcccccCC
Q 018250 58 TVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPP---RKYYAAGVPGSFHGRL 134 (359)
Q Consensus 58 ~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~---~~~~~~~vpgsfy~~l 134 (359)
--.|+|==||||..-+..- .....++.+|+-.-+-...-.++.. ..|++.-+ .+.-+..
T Consensus 198 G~~vlDPFcGTGgiLiEag-----------------l~G~~viG~Did~~mv~gak~Nl~~y~i~~~~~~~~-~Da~~lp 259 (347)
T COG1041 198 GELVLDPFCGTGGILIEAG-----------------LMGARVIGSDIDERMVRGAKINLEYYGIEDYPVLKV-LDATNLP 259 (347)
T ss_pred CCEeecCcCCccHHHHhhh-----------------hcCceEeecchHHHHHhhhhhhhhhhCcCceeEEEe-cccccCC
Confidence 3589999999998666541 2346888888865443332222221 12222221 2444555
Q ss_pred CCCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceeEEEe
Q 018250 135 FPKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLMVFSL 214 (359)
Q Consensus 135 ~p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lvl~~ 214 (359)
||++++|-|.+ +.|=+...+ .+ .....+.|. .||..-++-|++||++++..
T Consensus 260 l~~~~vdaIat--------DPPYGrst~-----~~--------~~~l~~Ly~--------~~le~~~evLk~gG~~vf~~ 310 (347)
T COG1041 260 LRDNSVDAIAT--------DPPYGRSTK-----IK--------GEGLDELYE--------EALESASEVLKPGGRIVFAA 310 (347)
T ss_pred CCCCccceEEe--------cCCCCcccc-----cc--------cccHHHHHH--------HHHHHHHHHhhcCcEEEEec
Confidence 99999999988 344332211 00 111233343 48888899999999999998
Q ss_pred c
Q 018250 215 I 215 (359)
Q Consensus 215 ~ 215 (359)
+
T Consensus 311 p 311 (347)
T COG1041 311 P 311 (347)
T ss_pred C
Confidence 7
No 220
>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=57.20 E-value=3.6 Score=36.30 Aligned_cols=53 Identities=15% Similarity=0.222 Sum_probs=37.5
Q ss_pred ccccCCCCCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCc
Q 018250 129 SFHGRLFPKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGG 208 (359)
Q Consensus 129 sfy~~l~p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG 208 (359)
+-.++.|-++|+|++.+...+--|.. .....+|+...+-|||||
T Consensus 37 As~e~~F~dns~d~iyaeHvlEHlt~------------------------------------~Eg~~alkechr~Lrp~G 80 (185)
T COG4627 37 ASNESMFEDNSVDAIYAEHVLEHLTY------------------------------------DEGTSALKECHRFLRPGG 80 (185)
T ss_pred hhhhccCCCcchHHHHHHHHHHHHhH------------------------------------HHHHHHHHHHHHHhCcCc
Confidence 33477888999999876544333211 234568888999999999
Q ss_pred eeEEEeccC
Q 018250 209 LMVFSLITG 217 (359)
Q Consensus 209 ~lvl~~~g~ 217 (359)
+|-+.++.-
T Consensus 81 ~LriAvPdl 89 (185)
T COG4627 81 KLRIAVPDL 89 (185)
T ss_pred EEEEEcCCc
Confidence 999998643
No 221
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=55.69 E-value=28 Score=36.14 Aligned_cols=130 Identities=18% Similarity=0.216 Sum_probs=73.5
Q ss_pred CCCCccchHHhhHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCcceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCC
Q 018250 13 GGDGTCSYAHNSQFQRGTVDAAKELVREAIVNKLDVGSYGYDNSYTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSL 92 (359)
Q Consensus 13 gG~g~~sY~~nS~~Q~~~~~~~~~~l~~ai~~~~~~~~~~~~~~~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~ 92 (359)
+|.....|......=++.+..-+.++.-. +. ...-..|.|...+.|..+..+. +
T Consensus 332 ~g~~~e~F~~Dt~~Wk~~V~~Y~~l~~~~------i~-----~~~iRNVMDMnAg~GGFAAAL~--------~------- 385 (506)
T PF03141_consen 332 PGISPEEFKEDTKHWKKRVSHYKKLLGLA------IK-----WGRIRNVMDMNAGYGGFAAALI--------D------- 385 (506)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHhhccc------cc-----ccceeeeeeecccccHHHHHhc--------c-------
Confidence 34555666666666555444444343211 11 2445679999999999998884 1
Q ss_pred CCCCceEEecCCCCCchHHHHHhCCCCcccccccCcccc---cCC-CCCCceeEEEecCcccccCCCCcccccccccccC
Q 018250 93 PVPDFQVFFNDHTENDFNTLFRTLPPRKYYAAGVPGSFH---GRL-FPKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWN 168 (359)
Q Consensus 93 ~~p~~~v~~nDLp~NDFn~lf~~l~~~~~~~~~vpgsfy---~~l-~p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n 168 (359)
.| -.+.|=.|...-||| .-+|--|.-|.++ +.. +=+.+.|++|++.-|-=..+ .+
T Consensus 386 -~~--VWVMNVVP~~~~ntL------~vIydRGLIG~yhDWCE~fsTYPRTYDLlHA~~lfs~~~~-rC----------- 444 (506)
T PF03141_consen 386 -DP--VWVMNVVPVSGPNTL------PVIYDRGLIGVYHDWCEAFSTYPRTYDLLHADGLFSLYKD-RC----------- 444 (506)
T ss_pred -CC--ceEEEecccCCCCcc------hhhhhcccchhccchhhccCCCCcchhheehhhhhhhhcc-cc-----------
Confidence 22 445666665554443 1223333334333 222 23689999998765532221 12
Q ss_pred CCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceeEE
Q 018250 169 QGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLMVF 212 (359)
Q Consensus 169 ~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lvl 212 (359)
++...|--.-+-|+|||.+++
T Consensus 445 -----------------------~~~~illEmDRILRP~G~~ii 465 (506)
T PF03141_consen 445 -----------------------EMEDILLEMDRILRPGGWVII 465 (506)
T ss_pred -----------------------cHHHHHHHhHhhcCCCceEEE
Confidence 233345556788999999876
No 222
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=53.22 E-value=7.8 Score=34.26 Aligned_cols=17 Identities=35% Similarity=0.452 Sum_probs=14.9
Q ss_pred EEEeecCCCCcccHHHH
Q 018250 60 RIADLGCSVGPNTFISV 76 (359)
Q Consensus 60 ~IaDlGCs~G~nt~~~~ 76 (359)
+|+|+-||.|.||+.++
T Consensus 2 ~vlD~fcG~GGNtIqFA 18 (163)
T PF09445_consen 2 TVLDAFCGVGGNTIQFA 18 (163)
T ss_dssp EEEETT-TTSHHHHHHH
T ss_pred EEEEeccCcCHHHHHHH
Confidence 68999999999999996
No 223
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=52.76 E-value=9.4 Score=34.90 Aligned_cols=20 Identities=15% Similarity=0.255 Sum_probs=17.4
Q ss_pred cceEEEeecCCCCcccHHHH
Q 018250 57 YTVRIADLGCSVGPNTFISV 76 (359)
Q Consensus 57 ~~~~IaDlGCs~G~nt~~~~ 76 (359)
++-+|+++||++|..|+.++
T Consensus 45 ~~k~vLEIGt~~GySal~la 64 (205)
T PF01596_consen 45 RPKRVLEIGTFTGYSALWLA 64 (205)
T ss_dssp T-SEEEEESTTTSHHHHHHH
T ss_pred CCceEEEeccccccHHHHHH
Confidence 46799999999999999986
No 224
>PRK00536 speE spermidine synthase; Provisional
Probab=52.57 E-value=53 Score=31.30 Aligned_cols=34 Identities=9% Similarity=-0.200 Sum_probs=25.9
Q ss_pred CcceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCC
Q 018250 56 SYTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTE 106 (359)
Q Consensus 56 ~~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~ 106 (359)
+.+-+||=+|=|.|.....++ + .|+ +|.+.|+=.
T Consensus 71 ~~pk~VLIiGGGDGg~~REvL--------k--------h~~-~v~mVeID~ 104 (262)
T PRK00536 71 KELKEVLIVDGFDLELAHQLF--------K--------YDT-HVDFVQADE 104 (262)
T ss_pred CCCCeEEEEcCCchHHHHHHH--------C--------cCC-eeEEEECCH
Confidence 568999999999999777764 1 233 888888865
No 225
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=51.39 E-value=12 Score=34.12 Aligned_cols=45 Identities=13% Similarity=0.091 Sum_probs=30.0
Q ss_pred cceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhC
Q 018250 57 YTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTL 116 (359)
Q Consensus 57 ~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l 116 (359)
...+|+|.-||.|+.|+.++ +.. ....|+.+|+-..-+.-|-+++
T Consensus 101 ~~e~VlD~faGIG~f~l~~a--------k~~-------~~~~V~A~d~Np~a~~~L~~Ni 145 (200)
T PF02475_consen 101 PGEVVLDMFAGIGPFSLPIA--------KHG-------KAKRVYAVDLNPDAVEYLKENI 145 (200)
T ss_dssp TT-EEEETT-TTTTTHHHHH--------HHT--------SSEEEEEES-HHHHHHHHHHH
T ss_pred cceEEEEccCCccHHHHHHh--------hhc-------CccEEEEecCCHHHHHHHHHHH
Confidence 35799999999999999985 211 1247999999765665555554
No 226
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=51.22 E-value=52 Score=31.94 Aligned_cols=34 Identities=21% Similarity=0.222 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccCceeEEEeccC
Q 018250 184 TFQAQFRSDFESILNARAEELVPGGLMVFSLITG 217 (359)
Q Consensus 184 ~y~~Q~~~D~~~fL~~Ra~EL~pGG~lvl~~~g~ 217 (359)
.+-.+--..+..+|..-.+-|+|||+|++..+-.
T Consensus 206 I~VN~El~~L~~~L~~~~~~L~~gGrl~visfHS 239 (296)
T PRK00050 206 IEVNDELEELERALEAALDLLKPGGRLAVISFHS 239 (296)
T ss_pred HHHHhhHHHHHHHHHHHHHHhcCCCEEEEEecCc
Confidence 4455566679999999999999999999988743
No 227
>COG5124 Protein predicted to be involved in meiotic recombination [Cell division and chromosome partitioning / General function prediction only]
Probab=50.56 E-value=11 Score=33.79 Aligned_cols=36 Identities=28% Similarity=0.178 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHcCCCChhhhccCCccccCCCH
Q 018250 230 ATYNFLGSCLWDLAKMGVISEEKARTFNVPAYFPYV 265 (359)
Q Consensus 230 ~~~~~l~~al~~lv~eGli~~e~~d~f~~P~y~ps~ 265 (359)
.+...+++.++.||.+|+++-|+...-|+=|.|||.
T Consensus 40 IVl~tVKd~lQqlVDDgvV~~EK~GtsN~YWsF~s~ 75 (209)
T COG5124 40 IVLMTVKDLLQQLVDDGVVSVEKCGTSNIYWSFKSQ 75 (209)
T ss_pred cHHHHHHHHHHHHhhcCceeeeeeccceeEEecchH
Confidence 467889999999999999999999999999999853
No 228
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=49.39 E-value=11 Score=34.14 Aligned_cols=34 Identities=24% Similarity=0.178 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHcCCCChhhhccCCccccCCCHH
Q 018250 233 NFLGSCLWDLAKMGVISEEKARTFNVPAYFPYVE 266 (359)
Q Consensus 233 ~~l~~al~~lv~eGli~~e~~d~f~~P~y~ps~~ 266 (359)
-.+++++..||.+|+|.-+++-+-|+=|.||+.+
T Consensus 30 ~~VKdvlq~LvDDglV~~EKiGssn~YWsFps~~ 63 (188)
T PF03962_consen 30 MSVKDVLQSLVDDGLVHVEKIGSSNYYWSFPSQA 63 (188)
T ss_pred hhHHHHHHHHhccccchhhhccCeeEEEecChHH
Confidence 5788999999999999999999999999999754
No 229
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=49.32 E-value=27 Score=33.69 Aligned_cols=110 Identities=16% Similarity=0.190 Sum_probs=55.4
Q ss_pred ceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHh-----CCCCc-ccccccCcccc
Q 018250 58 TVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRT-----LPPRK-YYAAGVPGSFH 131 (359)
Q Consensus 58 ~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~-----l~~~~-~~~~~vpgsfy 131 (359)
.-+|||+=|=||..|+..+.. --.+|+..|....-....-.+ +.... -|+.+-.=.|.
T Consensus 124 gkrvLnlFsYTGgfsv~Aa~g----------------GA~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l 187 (286)
T PF10672_consen 124 GKRVLNLFSYTGGFSVAAAAG----------------GAKEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKFL 187 (286)
T ss_dssp TCEEEEET-TTTHHHHHHHHT----------------TESEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHH
T ss_pred CCceEEecCCCCHHHHHHHHC----------------CCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHH
Confidence 359999999999999976411 013677777754222211111 11111 12222111222
Q ss_pred cCCCCCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceeE
Q 018250 132 GRLFPKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLMV 211 (359)
Q Consensus 132 ~~l~p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lv 211 (359)
.++=-.+.+|+|+. -|+... |++ -. ..+|+...++.-.+-|+|||.|+
T Consensus 188 ~~~~~~~~fD~IIl---------DPPsF~--------k~~-------~~--------~~~~y~~L~~~a~~ll~~gG~l~ 235 (286)
T PF10672_consen 188 KRLKKGGRFDLIIL---------DPPSFA--------KSK-------FD--------LERDYKKLLRRAMKLLKPGGLLL 235 (286)
T ss_dssp HHHHHTT-EEEEEE-----------SSEE--------SST-------CE--------HHHHHHHHHHHHHHTEEEEEEEE
T ss_pred HHHhcCCCCCEEEE---------CCCCCC--------CCH-------HH--------HHHHHHHHHHHHHHhcCCCCEEE
Confidence 22222457888887 243332 111 11 23566777877778899999987
Q ss_pred EEec
Q 018250 212 FSLI 215 (359)
Q Consensus 212 l~~~ 215 (359)
++.-
T Consensus 236 ~~sc 239 (286)
T PF10672_consen 236 TCSC 239 (286)
T ss_dssp EEE-
T ss_pred EEcC
Confidence 6653
No 230
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=48.72 E-value=56 Score=31.57 Aligned_cols=52 Identities=21% Similarity=0.268 Sum_probs=35.6
Q ss_pred CcceEEEeecCCCCcccHHHHHH------------HHHHHHHHhhcCCCCCCCceEEecCCCCCc
Q 018250 56 SYTVRIADLGCSVGPNTFISVQN------------IIEALEFKFQNLSLPVPDFQVFFNDHTEND 108 (359)
Q Consensus 56 ~~~~~IaDlGCs~G~nt~~~~~~------------ii~~~~~~~~~~~~~~p~~~v~~nDLp~ND 108 (359)
..+-.|+++|-|||..|..+++. ++..+.++.+... ...-+||++.|.-.-|
T Consensus 57 k~tD~VLEvGPGTGnLT~~lLe~~kkVvA~E~Dprmvael~krv~gtp-~~~kLqV~~gD~lK~d 120 (315)
T KOG0820|consen 57 KPTDVVLEVGPGTGNLTVKLLEAGKKVVAVEIDPRMVAELEKRVQGTP-KSGKLQVLHGDFLKTD 120 (315)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHhcCeEEEEecCcHHHHHHHHHhcCCC-ccceeeEEecccccCC
Confidence 45789999999999999999876 6666666654221 1234666666654444
No 231
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=47.63 E-value=1.2e+02 Score=28.28 Aligned_cols=23 Identities=26% Similarity=0.407 Sum_probs=16.8
Q ss_pred cceEEEeecCCCCcccHHHHHHHH
Q 018250 57 YTVRIADLGCSVGPNTFISVQNII 80 (359)
Q Consensus 57 ~~~~IaDlGCs~G~nt~~~~~~ii 80 (359)
...+||-||.|+|. |..-++.|+
T Consensus 73 ~gskVLYLGAasGT-TVSHvSDIv 95 (229)
T PF01269_consen 73 PGSKVLYLGAASGT-TVSHVSDIV 95 (229)
T ss_dssp TT-EEEEETTTTSH-HHHHHHHHH
T ss_pred CCCEEEEecccCCC-ccchhhhcc
Confidence 35799999999997 555556655
No 232
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=47.27 E-value=12 Score=37.15 Aligned_cols=32 Identities=28% Similarity=0.262 Sum_probs=24.9
Q ss_pred cceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCC
Q 018250 57 YTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHT 105 (359)
Q Consensus 57 ~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp 105 (359)
...+++|+|||+|.-|-.++ ++ ...|+.-|.-
T Consensus 211 ~g~~vlDLGAsPGGWT~~L~--------~r---------G~~V~AVD~g 242 (357)
T PRK11760 211 PGMRAVDLGAAPGGWTYQLV--------RR---------GMFVTAVDNG 242 (357)
T ss_pred CCCEEEEeCCCCcHHHHHHH--------Hc---------CCEEEEEech
Confidence 45789999999999998885 22 2488999843
No 233
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=44.29 E-value=36 Score=31.90 Aligned_cols=21 Identities=19% Similarity=0.319 Sum_probs=18.5
Q ss_pred HHHHHHHHhhccCceeEEEec
Q 018250 195 SILNARAEELVPGGLMVFSLI 215 (359)
Q Consensus 195 ~fL~~Ra~EL~pGG~lvl~~~ 215 (359)
.|++..++-|+|||.+++...
T Consensus 172 ef~~~~~~~L~~~Gv~v~~~~ 192 (246)
T PF01564_consen 172 EFYQLCKRRLKPDGVLVLQAG 192 (246)
T ss_dssp HHHHHHHHHEEEEEEEEEEEE
T ss_pred HHHHHHHhhcCCCcEEEEEcc
Confidence 478889999999999999883
No 234
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=44.09 E-value=86 Score=30.19 Aligned_cols=19 Identities=16% Similarity=0.254 Sum_probs=17.1
Q ss_pred HHHHHHHHhhccCceeEEE
Q 018250 195 SILNARAEELVPGGLMVFS 213 (359)
Q Consensus 195 ~fL~~Ra~EL~pGG~lvl~ 213 (359)
.|++..++-|+++|.++..
T Consensus 171 eFy~~~~~~L~~~Gi~v~q 189 (282)
T COG0421 171 EFYEGCRRALKEDGIFVAQ 189 (282)
T ss_pred HHHHHHHHhcCCCcEEEEe
Confidence 4788899999999999988
No 235
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=43.76 E-value=25 Score=31.59 Aligned_cols=96 Identities=19% Similarity=0.227 Sum_probs=54.9
Q ss_pred EEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCC--chHH-HHHhCCCCcccccccCcccccCCCC
Q 018250 60 RIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTEN--DFNT-LFRTLPPRKYYAAGVPGSFHGRLFP 136 (359)
Q Consensus 60 ~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~N--DFn~-lf~~l~~~~~~~~~vpgsfy~~l~p 136 (359)
+|+|+|+|-|-=.+.+. .. .|+.++++.|--.- .|-. +-+.|.-..+- .+.+...+ ...
T Consensus 51 ~~lDiGSGaGfPGipLa---------I~------~p~~~~~LvEs~~KK~~FL~~~~~~L~L~nv~--v~~~R~E~-~~~ 112 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLA---------IA------RPDLQVTLVESVGKKVAFLKEVVRELGLSNVE--VINGRAEE-PEY 112 (184)
T ss_dssp EEEEETSTTTTTHHHHH---------HH-------TTSEEEEEESSHHHHHHHHHHHHHHT-SSEE--EEES-HHH-TTT
T ss_pred eEEecCCCCCChhHHHH---------Hh------CCCCcEEEEeCCchHHHHHHHHHHHhCCCCEE--EEEeeecc-ccc
Confidence 89999999999999883 22 36778888886531 1211 11111111111 11122223 456
Q ss_pred CCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceeEEEec
Q 018250 137 KSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLMVFSLI 215 (359)
Q Consensus 137 ~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lvl~~~ 215 (359)
..++|+++|=+. ..+..++..-..-|++||++++.-+
T Consensus 113 ~~~fd~v~aRAv------------------------------------------~~l~~l~~~~~~~l~~~G~~l~~KG 149 (184)
T PF02527_consen 113 RESFDVVTARAV------------------------------------------APLDKLLELARPLLKPGGRLLAYKG 149 (184)
T ss_dssp TT-EEEEEEESS------------------------------------------SSHHHHHHHHGGGEEEEEEEEEEES
T ss_pred CCCccEEEeehh------------------------------------------cCHHHHHHHHHHhcCCCCEEEEEcC
Confidence 788888888221 1334566677778899999877653
No 236
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=43.60 E-value=12 Score=34.35 Aligned_cols=42 Identities=12% Similarity=0.070 Sum_probs=31.0
Q ss_pred EEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCC
Q 018250 61 IADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLP 117 (359)
Q Consensus 61 IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~ 117 (359)
|||+||=+|...+.++ +.- .--.+++.|+..+-+...-.++.
T Consensus 1 vaDIGtDHgyLpi~L~--------~~~-------~~~~~ia~DI~~gpL~~A~~~i~ 42 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLL--------KNG-------KAPKAIAVDINPGPLEKAKENIA 42 (205)
T ss_dssp EEEET-STTHHHHHHH--------HTT-------SEEEEEEEESSHHHHHHHHHHHH
T ss_pred CceeccchhHHHHHHH--------hcC-------CCCEEEEEeCCHHHHHHHHHHHH
Confidence 7999999999999986 221 12379999999888777666553
No 237
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=43.34 E-value=57 Score=30.02 Aligned_cols=19 Identities=26% Similarity=-0.011 Sum_probs=16.7
Q ss_pred ceEEEeecCCCCcccHHHH
Q 018250 58 TVRIADLGCSVGPNTFISV 76 (359)
Q Consensus 58 ~~~IaDlGCs~G~nt~~~~ 76 (359)
-.+|+|+=-|.|..|.++.
T Consensus 49 g~tVid~~PGgGy~TrI~s 67 (238)
T COG4798 49 GATVIDLIPGGGYFTRIFS 67 (238)
T ss_pred CCEEEEEecCCccHhhhhc
Confidence 4789999999999999873
No 238
>KOG3433 consensus Protein involved in meiotic recombination/predicted coiled-coil protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=39.18 E-value=20 Score=32.17 Aligned_cols=36 Identities=25% Similarity=0.251 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHcCCCChhhhccCCccccCCCH
Q 018250 230 ATYNFLGSCLWDLAKMGVISEEKARTFNVPAYFPYV 265 (359)
Q Consensus 230 ~~~~~l~~al~~lv~eGli~~e~~d~f~~P~y~ps~ 265 (359)
.++..+.++|+.||.+|++..+++..-|.=|-|||.
T Consensus 39 Iv~~tvKdvLQsLvDD~lV~~eKIgtSnyywsfps~ 74 (203)
T KOG3433|consen 39 IVWQTVKDVLQSLVDDGLVIKEKIGTSNYYWSFPSE 74 (203)
T ss_pred eehhHHHHHHHHHhccchHHHHHhcccccccccchH
Confidence 467788999999999999999999999999999974
No 239
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=38.47 E-value=2.2e+02 Score=28.85 Aligned_cols=31 Identities=23% Similarity=0.346 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHhhccCceeEEEeccC
Q 018250 187 AQFRSDFESILNARAEELVPGGLMVFSLITG 217 (359)
Q Consensus 187 ~Q~~~D~~~fL~~Ra~EL~pGG~lvl~~~g~ 217 (359)
.+..+|....+..-.+-|+|||.++++..-+
T Consensus 309 ~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~~ 339 (393)
T COG1092 309 FSAQRDYKDLNDLALRLLAPGGTLVTSSCSR 339 (393)
T ss_pred hhHHHHHHHHHHHHHHHcCCCCEEEEEecCC
Confidence 4567788889988899999999999888533
No 240
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=38.24 E-value=51 Score=30.70 Aligned_cols=45 Identities=18% Similarity=0.245 Sum_probs=35.5
Q ss_pred eEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCC
Q 018250 59 VRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPP 118 (359)
Q Consensus 59 ~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~ 118 (359)
.+|+|+||=+|+....++. . .+--.++..|...+-|.+.-+.++.
T Consensus 18 ~~iaDIGsDHAYLp~~Lv~--------~-------~~~~~~va~eV~~gpl~~a~~~v~~ 62 (226)
T COG2384 18 ARIADIGSDHAYLPIYLVK--------N-------NPASTAVAGEVVPGPLESAIRNVKK 62 (226)
T ss_pred CceeeccCchhHhHHHHHh--------c-------CCcceEEEeecccCHHHHHHHHHHh
Confidence 3499999999999998862 1 2345789999999999888777764
No 241
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=37.64 E-value=35 Score=33.27 Aligned_cols=35 Identities=20% Similarity=0.309 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccCceeEEEeccC
Q 018250 183 ETFQAQFRSDFESILNARAEELVPGGLMVFSLITG 217 (359)
Q Consensus 183 ~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lvl~~~g~ 217 (359)
..|-.+--..+..+|.+--+-|+|||+|++..+-.
T Consensus 213 RI~VNdEL~~L~~~L~~a~~~L~~gGRl~VIsFHS 247 (314)
T COG0275 213 RIYVNDELEELEEALEAALDLLKPGGRLAVISFHS 247 (314)
T ss_pred eeeehhHHHHHHHHHHHHHHhhCCCcEEEEEEecc
Confidence 46667777889999999999999999999988743
No 242
>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]
Probab=37.38 E-value=3e+02 Score=28.31 Aligned_cols=131 Identities=19% Similarity=0.158 Sum_probs=67.3
Q ss_pred CcceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCC---Cccccccc-Ccccc
Q 018250 56 SYTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPP---RKYYAAGV-PGSFH 131 (359)
Q Consensus 56 ~~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~---~~~~~~~v-pgsfy 131 (359)
....||+|.=++.|.=|..++. +. .. +=.+|.||--.|--..|-.++.. ...-++.. +..|=
T Consensus 240 q~gERIlDmcAAPGGKTt~IAa-----lM---kn------~G~I~AnD~n~~r~~~l~~n~~rlGv~ntiv~n~D~~ef~ 305 (460)
T KOG1122|consen 240 QPGERILDMCAAPGGKTTHIAA-----LM---KN------TGVIFANDSNENRLKSLKANLHRLGVTNTIVSNYDGREFP 305 (460)
T ss_pred CCCCeecchhcCCCchHHHHHH-----HH---cC------CceEEecccchHHHHHHHHHHHHhCCCceEEEccCccccc
Confidence 4468999999999999865531 11 12 23899999887776666555543 22212211 22332
Q ss_pred cCCCCCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceeE
Q 018250 132 GRLFPKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLMV 211 (359)
Q Consensus 132 ~~l~p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lv 211 (359)
+-.||. |+|=|.- +.|+.=+. -.+|..-.++.........|. +=-+..|.+--+-+++||+||
T Consensus 306 ~~~~~~-~fDRVLL--------DAPCSGtg----vi~K~~~vkt~k~~~di~~~~----~LQr~LllsAi~lv~~GGvLV 368 (460)
T KOG1122|consen 306 EKEFPG-SFDRVLL--------DAPCSGTG----VISKDQSVKTNKTVKDILRYA----HLQRELLLSAIDLVKAGGVLV 368 (460)
T ss_pred ccccCc-ccceeee--------cCCCCCCc----ccccccccccchhHHHHHHhH----HHHHHHHHHHHhhccCCcEEE
Confidence 333554 5555432 34553221 011112222222111111111 111233444567889999999
Q ss_pred EEeccC
Q 018250 212 FSLITG 217 (359)
Q Consensus 212 l~~~g~ 217 (359)
-++...
T Consensus 369 YSTCSI 374 (460)
T KOG1122|consen 369 YSTCSI 374 (460)
T ss_pred EEeeec
Confidence 988644
No 243
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=37.37 E-value=36 Score=30.15 Aligned_cols=27 Identities=22% Similarity=0.216 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHhhccCceeEEEeccC
Q 018250 191 SDFESILNARAEELVPGGLMVFSLITG 217 (359)
Q Consensus 191 ~D~~~fL~~Ra~EL~pGG~lvl~~~g~ 217 (359)
+-+..+|..-.+.|+|||.+++....+
T Consensus 33 ~~~~~~~~~~~rvLk~~g~~~i~~~~~ 59 (231)
T PF01555_consen 33 EWMEEWLKECYRVLKPGGSIFIFIDDR 59 (231)
T ss_dssp HHHHHHHHHHHHHEEEEEEEEEEE-CC
T ss_pred HHHHHHHHHHHhhcCCCeeEEEEecch
Confidence 346667777788899999998877543
No 244
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=36.95 E-value=36 Score=31.44 Aligned_cols=32 Identities=25% Similarity=0.409 Sum_probs=24.3
Q ss_pred ceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCC
Q 018250 58 TVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDH 104 (359)
Q Consensus 58 ~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDL 104 (359)
..+++|+|+|-|-=++.++ |+ .|+.+|.+-|=
T Consensus 68 ~~~~~DIGSGaGfPGipLA--I~-------------~p~~~vtLles 99 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLA--IA-------------FPDLKVTLLES 99 (215)
T ss_pred CCEEEEeCCCCCCchhhHH--Hh-------------ccCCcEEEEcc
Confidence 5899999999999999884 11 35667777664
No 245
>cd01842 SGNH_hydrolase_like_5 SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=36.27 E-value=1.1e+02 Score=27.68 Aligned_cols=61 Identities=20% Similarity=0.241 Sum_probs=46.9
Q ss_pred ccc-cCCCCCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 018250 129 SFH-GRLFPKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPG 207 (359)
Q Consensus 129 sfy-~~l~p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pG 207 (359)
||. ++++-.+..|+|+-|+|||=+++-.+. ..+|+++.+.+++..-.+-|.|+
T Consensus 39 ~f~~D~ll~gg~~DVIi~Ns~LWDl~ry~~~--------------------------~~~~Y~~NL~~Lf~rLk~~lp~~ 92 (183)
T cd01842 39 SFENDVLLEGGRLDLVIMNSCLWDLSRYQRN--------------------------SMKTYRENLERLFSKLDSVLPIE 92 (183)
T ss_pred hhccceeecCCceeEEEEecceecccccCCC--------------------------CHHHHHHHHHHHHHHHHhhCCCc
Confidence 444 455677888999999999988875421 03678889999998777778899
Q ss_pred ceeEEEec
Q 018250 208 GLMVFSLI 215 (359)
Q Consensus 208 G~lvl~~~ 215 (359)
-.++..+-
T Consensus 93 allIW~tt 100 (183)
T cd01842 93 CLIVWNTA 100 (183)
T ss_pred cEEEEecC
Confidence 88888774
No 246
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=34.31 E-value=41 Score=32.22 Aligned_cols=128 Identities=20% Similarity=0.177 Sum_probs=66.8
Q ss_pred cceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCC---Cccccc-ccCccccc
Q 018250 57 YTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPP---RKYYAA-GVPGSFHG 132 (359)
Q Consensus 57 ~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~---~~~~~~-~vpgsfy~ 132 (359)
...+|+|+-+|.|.-|..++ +... ..-.++.+|.-.+-...|-.++.. ..+-+. .-.+.+ .
T Consensus 85 ~~~~VLD~CAapGgKt~~la--------~~~~------~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~D~~~~-~ 149 (283)
T PF01189_consen 85 PGERVLDMCAAPGGKTTHLA--------ELMG------NKGEIVANDISPKRLKRLKENLKRLGVFNVIVINADARKL-D 149 (283)
T ss_dssp TTSEEEESSCTTSHHHHHHH--------HHTT------TTSEEEEEESSHHHHHHHHHHHHHTT-SSEEEEESHHHHH-H
T ss_pred ccccccccccCCCCceeeee--------eccc------chhHHHHhccCHHHHHHHHHHHHhcCCceEEEEeeccccc-c
Confidence 34679999999999998775 2322 135899999988777776555432 111111 101111 0
Q ss_pred CCCCCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhh----ccCc
Q 018250 133 RLFPKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEEL----VPGG 208 (359)
Q Consensus 133 ~l~p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL----~pGG 208 (359)
.-.+...+|.|.. ++|+.-...... +. .+....++... +. +.+--...|+.-++-+ +|||
T Consensus 150 ~~~~~~~fd~Vlv--------DaPCSg~G~i~r--~p-~~~~~~~~~~~-~~----l~~~Q~~iL~~a~~~~~~~~k~gG 213 (283)
T PF01189_consen 150 PKKPESKFDRVLV--------DAPCSGLGTIRR--NP-DIKWRRSPEDI-EK----LAELQREILDNAAKLLNIDFKPGG 213 (283)
T ss_dssp HHHHTTTEEEEEE--------ECSCCCGGGTTT--CT-THHHHE-TTHH-HH----HHHHHHHHHHHHHHCEHHHBEEEE
T ss_pred ccccccccchhhc--------CCCccchhhhhh--cc-chhhccccccc-ch----HHHHHHHHHHHHHHhhcccccCCC
Confidence 1123335777765 445432210000 00 00001111111 11 2222456777777888 9999
Q ss_pred eeEEEec
Q 018250 209 LMVFSLI 215 (359)
Q Consensus 209 ~lvl~~~ 215 (359)
++|-++-
T Consensus 214 ~lvYsTC 220 (283)
T PF01189_consen 214 RLVYSTC 220 (283)
T ss_dssp EEEEEES
T ss_pred eEEEEec
Confidence 9999885
No 247
>PF02268 TFIIA_gamma_N: Transcription initiation factor IIA, gamma subunit, helical domain; InterPro: IPR015872 Transcription factor IIA (TFIIA) is one of several factors that form part of a transcription pre-initiation complex along with RNA polymerase II, the TATA-box-binding protein (TBP) and TBP-associated factors, on the TATA-box sequence upstream of the initiation start site. After initiation, some components of the pre-initiation complex (including TFIIA) remain attached and re-initiate a subsequent round of transcription. TFIIA binds to TBP to stabilise TBP binding to the TATA element. TFIIA also inhibits the cytokine HMGB1 (high mobility group 1 protein) binding to TBP [], and can dissociate HMGB1 already bound to TBP/TATA-box. Human and Drosophila TFIIA have three subunits: two large subunits, LN/alpha and LC/beta, derived from the same gene, and a small subunit, S/gamma. Yeast TFIIA has two subunits: a large TOA1 subunit that shows sequence similarity to the N-terminal of LN/alpha and the C-terminal of LC/beta, and a small subunit, TOA2 that is highly homologous with S/gamma. The conserved regions of the large and small subunits of TFIIA combine to form two domains: a four-helix bundle (helical domain) composed of two helices from each of the N-terminal regions of TOA1 and TOA2 in yeast; and a beta-barrel (beta-barrel domain) composed of beta-sheets from the C-terminal regions of TOA1 and TOA2 []. This entry represents the alpha-helical domain found at the N-terminal of the gamma subunit of transcription factor TFIIA.; GO: 0006367 transcription initiation from RNA polymerase II promoter, 0005672 transcription factor TFIIA complex; PDB: 1NVP_D 1RM1_B 1YTF_D 1NH2_D.
Probab=33.62 E-value=44 Score=23.51 Aligned_cols=22 Identities=23% Similarity=0.096 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHcCCCChhh
Q 018250 231 TYNFLGSCLWDLAKMGVISEEK 252 (359)
Q Consensus 231 ~~~~l~~al~~lv~eGli~~e~ 252 (359)
+-..|.++|.+|+.+|.|+++-
T Consensus 11 lG~aL~dtLDeli~~~~I~p~L 32 (49)
T PF02268_consen 11 LGIALTDTLDELIQEGKITPQL 32 (49)
T ss_dssp HHHHHHHHHHHHHHTTSS-HHH
T ss_pred HHHHHHHHHHHHHHcCCCCHHH
Confidence 3468899999999999998764
No 248
>KOG2920 consensus Predicted methyltransferase [General function prediction only]
Probab=32.75 E-value=22 Score=34.22 Aligned_cols=19 Identities=21% Similarity=0.501 Sum_probs=15.7
Q ss_pred ceEEEeecCCCCcccHHHH
Q 018250 58 TVRIADLGCSVGPNTFISV 76 (359)
Q Consensus 58 ~~~IaDlGCs~G~nt~~~~ 76 (359)
--||+|||||+|--.+...
T Consensus 117 ~k~vLELgCg~~Lp~i~~~ 135 (282)
T KOG2920|consen 117 GKRVLELGCGAALPGIFAF 135 (282)
T ss_pred CceeEecCCcccccchhhh
Confidence 4689999999998887663
No 249
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=31.60 E-value=41 Score=32.66 Aligned_cols=39 Identities=10% Similarity=0.002 Sum_probs=26.8
Q ss_pred ceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchH
Q 018250 58 TVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFN 110 (359)
Q Consensus 58 ~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn 110 (359)
..+++|.+||.|.-|..++ +.+ .+...|+.-|.-.....
T Consensus 20 g~~vlD~TlG~GGhS~~il--------~~~------~~~g~VigiD~D~~al~ 58 (296)
T PRK00050 20 DGIYVDGTFGGGGHSRAIL--------ERL------GPKGRLIAIDRDPDAIA 58 (296)
T ss_pred CCEEEEeCcCChHHHHHHH--------HhC------CCCCEEEEEcCCHHHHH
Confidence 3589999999999999885 232 12346777776554433
No 250
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=31.33 E-value=43 Score=30.64 Aligned_cols=20 Identities=25% Similarity=0.390 Sum_probs=16.8
Q ss_pred eEEEeecCCCCcccHHHHHH
Q 018250 59 VRIADLGCSVGPNTFISVQN 78 (359)
Q Consensus 59 ~~IaDlGCs~G~nt~~~~~~ 78 (359)
-.++|||.|||..|+.....
T Consensus 34 d~~~DLGaGsGiLs~~Aa~~ 53 (252)
T COG4076 34 DTFADLGAGSGILSVVAAHA 53 (252)
T ss_pred hceeeccCCcchHHHHHHhh
Confidence 56799999999999987654
No 251
>PF09597 IGR: IGR protein motif; InterPro: IPR019083 This entry is found in fungal and plant proteins and contains a conserved IGR motif. Its function is unknown.
Probab=30.99 E-value=43 Score=24.34 Aligned_cols=27 Identities=26% Similarity=0.529 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccCce
Q 018250 183 ETFQAQFRSDFESILNARAEELVPGGL 209 (359)
Q Consensus 183 ~~y~~Q~~~D~~~fL~~Ra~EL~pGG~ 209 (359)
+.+++-|..||..++......||.-|+
T Consensus 13 ~~~~~kf~~~w~~lf~~~s~~LK~~GI 39 (57)
T PF09597_consen 13 EEHAEKFESDWEKLFTTSSKQLKELGI 39 (57)
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHCCC
Confidence 456777888999999999999998775
No 252
>PF14904 FAM86: Family of unknown function
Probab=30.66 E-value=42 Score=27.24 Aligned_cols=31 Identities=26% Similarity=0.395 Sum_probs=26.1
Q ss_pred HHHHHHHhhhhhhhc--cCHHHHHHHHHHHHHH
Q 018250 301 LSHLRAVLEGLIGKH--FGEELLENIFNHINTK 331 (359)
Q Consensus 301 ~~~iRa~~~~~l~~~--~~e~i~delf~r~~~~ 331 (359)
.+|.|+|+..++..+ .+.+..|+||+.|.+.
T Consensus 67 ~kY~~~FLk~lI~k~Ea~~~EplDeLYealae~ 99 (100)
T PF14904_consen 67 VKYRRCFLKELIKKHEAVHCEPLDELYEALAEV 99 (100)
T ss_pred hhHHHHHHHHHHHHHHHhcCCcHHHHHHHHHhh
Confidence 468899999999854 6889999999999864
No 253
>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]
Probab=30.15 E-value=4.2e+02 Score=25.34 Aligned_cols=98 Identities=16% Similarity=0.208 Sum_probs=50.6
Q ss_pred CCccchHHhhHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCcceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCC
Q 018250 15 DGTCSYAHNSQFQRGTVDAAKELVREAIVNKLDVGSYGYDNSYTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPV 94 (359)
Q Consensus 15 ~g~~sY~~nS~~Q~~~~~~~~~~l~~ai~~~~~~~~~~~~~~~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~ 94 (359)
+|.--|---+++|.+.+...+-=+++ +. -..-.+||=||.++|.. ..-++.|+ -
T Consensus 126 ~~kvEyRVWnPfrSKLAA~I~gGvdn-------ih-----ikpGsKVLYLGAasGtt-VSHvSDiV-------------G 179 (317)
T KOG1596|consen 126 DGKVEYRVWNPFRSKLAAGILGGVDN-------IH-----IKPGSKVLYLGAASGTT-VSHVSDIV-------------G 179 (317)
T ss_pred CCcEEEEEeChHHHHHHHHhhcCccc-------ee-----ecCCceEEEeeccCCce-eehhhccc-------------C
Confidence 45556666667777655443222221 11 12247899999999984 33334333 2
Q ss_pred CCceEE---ecCCCCCchHHHHHhCCC------CcccccccCcccccCCCCCCceeEEEe
Q 018250 95 PDFQVF---FNDHTENDFNTLFRTLPP------RKYYAAGVPGSFHGRLFPKSTLHVVNS 145 (359)
Q Consensus 95 p~~~v~---~nDLp~NDFn~lf~~l~~------~~~~~~~vpgsfy~~l~p~~s~d~~~S 145 (359)
|+=.|| |++-+.-|.-.+.+..++ ..-.+ .=|.-|.| -+|+|||
T Consensus 180 peG~VYAVEfs~rsGRdL~nmAkkRtNiiPIiEDArhP-----~KYRmlVg--mVDvIFa 232 (317)
T KOG1596|consen 180 PEGCVYAVEFSHRSGRDLINMAKKRTNIIPIIEDARHP-----AKYRMLVG--MVDVIFA 232 (317)
T ss_pred CCceEEEEEecccchHHHHHHhhccCCceeeeccCCCc-----hheeeeee--eEEEEec
Confidence 343444 445555555544444332 00011 11344555 8999998
No 254
>cd08788 CARD_NOD2_2_CARD15 Caspase activation and recruitment domain of NOD2, repeat 2. Caspase activation and recruitment domain (CARD) similar to that found in human NOD2 (CARD15), repeat 2. NOD2 is a member of the Nod-like receptor (NLR) family, which plays a central role in the innate immune response. NLRs typically contain an N-terminal effector domain, a central nucleotide-binding domain and a C-terminal ligand-binding region of several leucine-rich repeats (LRRs). In NOD2, as well as NOD1, the N-terminal effector domain is a CARD. NOD2 contains two N-terminal CARD repeats. Mutations in NOD2 have been associated with Crohns disease and Blau syndrome. Nod2-CARDs have been shown to interact with the CARD domain of the downstream effector RICK (RIP2, CARDIAK), a serine/threonine kinase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are pr
Probab=30.11 E-value=59 Score=25.32 Aligned_cols=44 Identities=16% Similarity=0.229 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHcCCCChhhhccCCccccCCCHHHHHHHHHhC
Q 018250 231 TYNFLGSCLWDLAKMGVISEEKARTFNVPAYFPYVEELESLIQRN 275 (359)
Q Consensus 231 ~~~~l~~al~~lv~eGli~~e~~d~f~~P~y~ps~~E~~~~i~~~ 275 (359)
+...+..+|+.|...|.+++++-|....|.+.|+ +..+.+|+..
T Consensus 12 l~~~V~~~Ld~ll~~G~is~~Ecd~Ir~p~~T~s-qqARrLLD~V 55 (81)
T cd08788 12 LQHHVDGALELLLTRGFFSSYDCDEIRLPIFTPS-QQARRLLDLV 55 (81)
T ss_pred HHHHHHHHHHHHHHcCCccHhhcchhhcCCCChH-HHHHHHHHHH
Confidence 3456778899999999999999999999988875 5566666543
No 255
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=29.12 E-value=63 Score=31.96 Aligned_cols=18 Identities=28% Similarity=0.475 Sum_probs=15.4
Q ss_pred EEEeecCCCCcccHHHHH
Q 018250 60 RIADLGCSVGPNTFISVQ 77 (359)
Q Consensus 60 ~IaDlGCs~G~nt~~~~~ 77 (359)
+|+|+=||+|..|+.++.
T Consensus 199 ~vlDlycG~G~fsl~la~ 216 (352)
T PF05958_consen 199 DVLDLYCGVGTFSLPLAK 216 (352)
T ss_dssp EEEEES-TTTCCHHHHHC
T ss_pred cEEEEeecCCHHHHHHHh
Confidence 799999999999999863
No 256
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=28.68 E-value=46 Score=34.25 Aligned_cols=23 Identities=22% Similarity=0.335 Sum_probs=19.5
Q ss_pred CcceEEEeecCCCCcccHHHHHH
Q 018250 56 SYTVRIADLGCSVGPNTFISVQN 78 (359)
Q Consensus 56 ~~~~~IaDlGCs~G~nt~~~~~~ 78 (359)
.+..-++|+|.|||-.|+..+..
T Consensus 65 ~gkv~vLdigtGTGLLSmMAvra 87 (636)
T KOG1501|consen 65 IGKVFVLDIGTGTGLLSMMAVRA 87 (636)
T ss_pred CceEEEEEccCCccHHHHHHHHh
Confidence 45677899999999999988765
No 257
>smart00400 ZnF_CHCC zinc finger.
Probab=28.44 E-value=47 Score=23.39 Aligned_cols=21 Identities=19% Similarity=0.303 Sum_probs=17.0
Q ss_pred eEEEeecCCCCcccHHHHHHH
Q 018250 59 VRIADLGCSVGPNTFISVQNI 79 (359)
Q Consensus 59 ~~IaDlGCs~G~nt~~~~~~i 79 (359)
-..=++|||.|.+.+.+++.+
T Consensus 22 n~~~Cf~cg~gGd~i~fv~~~ 42 (55)
T smart00400 22 QFFHCFGCGAGGNVISFLMKY 42 (55)
T ss_pred CEEEEeCCCCCCCHHHHHHHH
Confidence 456789999999999887543
No 258
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=28.28 E-value=47 Score=30.96 Aligned_cols=22 Identities=18% Similarity=0.250 Sum_probs=16.2
Q ss_pred cceEEEeecCCCCcccHHHHHH
Q 018250 57 YTVRIADLGCSVGPNTFISVQN 78 (359)
Q Consensus 57 ~~~~IaDlGCs~G~nt~~~~~~ 78 (359)
.+++|+++|.|+|.++.-+++.
T Consensus 18 ~~~~ivE~GaG~G~La~diL~~ 39 (252)
T PF02636_consen 18 EPLRIVEIGAGRGTLARDILRY 39 (252)
T ss_dssp S-EEEEEES-TTSHHHHHHHHH
T ss_pred cCcEEEEECCCchHHHHHHHHH
Confidence 4699999999999877666544
No 259
>PF09851 SHOCT: Short C-terminal domain; InterPro: IPR018649 This family of hypothetical prokaryotic proteins has no known function.
Probab=27.93 E-value=53 Score=20.53 Aligned_cols=17 Identities=41% Similarity=0.370 Sum_probs=14.0
Q ss_pred HHHHHHHcCCCChhhhc
Q 018250 238 CLWDLAKMGVISEEKAR 254 (359)
Q Consensus 238 al~~lv~eGli~~e~~d 254 (359)
.|.+|...|.|+++++.
T Consensus 7 ~L~~l~~~G~IseeEy~ 23 (31)
T PF09851_consen 7 KLKELYDKGEISEEEYE 23 (31)
T ss_pred HHHHHHHcCCCCHHHHH
Confidence 56888899999988764
No 260
>PF02375 JmjN: jmjN domain; InterPro: IPR003349 Jumonji protein is required for neural tube formation in mice [].There is evidence of domain swapping within the jumonji family of transcription factors []. This domain is often associated with JmjC (see IPR003347 from INTERPRO).; PDB: 2XML_A 2W2I_C 3DXT_A 3DXU_A 2OX0_B 2OQ6_B 2WWJ_A 2Q8D_A 3PDQ_A 2YBK_A ....
Probab=27.25 E-value=27 Score=22.58 Aligned_cols=15 Identities=33% Similarity=0.873 Sum_probs=7.8
Q ss_pred cccCCCHHHHHHHHH
Q 018250 259 PAYFPYVEELESLIQ 273 (359)
Q Consensus 259 P~y~ps~~E~~~~i~ 273 (359)
|.+.||.+|+++.+.
T Consensus 1 Pvf~Pt~eEF~dp~~ 15 (34)
T PF02375_consen 1 PVFYPTMEEFKDPIK 15 (34)
T ss_dssp EEE---HHHHS-HHH
T ss_pred CcccCCHHHHhCHHH
Confidence 667888888876653
No 261
>PHA00457 inhibitor of host bacterial RNA polymerase
Probab=26.77 E-value=60 Score=23.78 Aligned_cols=29 Identities=34% Similarity=0.678 Sum_probs=23.3
Q ss_pred cCCccccCCCHHHHHHHHH----hCCceeEeEEE
Q 018250 255 TFNVPAYFPYVEELESLIQ----RNGHFAMERMQ 284 (359)
Q Consensus 255 ~f~~P~y~ps~~E~~~~i~----~~G~F~i~~le 284 (359)
+|-+|.|..|++|-..+-+ ..| |.|.++.
T Consensus 26 sfEVPV~A~SLeeA~e~AE~~Y~~aG-f~VtRiR 58 (63)
T PHA00457 26 SFEVPVYAKSLEEATELAEWQYVPAG-FVVTRIR 58 (63)
T ss_pred eEEeeeecccHHHHHHHHHHhhhccC-cEEEEec
Confidence 5788999999999887766 467 9987764
No 262
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=25.85 E-value=1.2e+02 Score=29.47 Aligned_cols=34 Identities=18% Similarity=0.279 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccCceeEEEeccC
Q 018250 184 TFQAQFRSDFESILNARAEELVPGGLMVFSLITG 217 (359)
Q Consensus 184 ~y~~Q~~~D~~~fL~~Ra~EL~pGG~lvl~~~g~ 217 (359)
.+-.+--..+..+|..-..-|+|||+|++..+-.
T Consensus 210 I~VN~EL~~L~~~L~~~~~~L~~gGrl~VISfHS 243 (305)
T TIGR00006 210 IYVNDELEELEEALQFAPNLLAPGGRLSIISFHS 243 (305)
T ss_pred HHHHHhHHHHHHHHHHHHHHhcCCCEEEEEecCc
Confidence 4445556678899999999999999999988743
No 263
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=25.34 E-value=44 Score=35.84 Aligned_cols=24 Identities=25% Similarity=0.270 Sum_probs=20.8
Q ss_pred CcceEEEeecCCCCcccHHHHHHH
Q 018250 56 SYTVRIADLGCSVGPNTFISVQNI 79 (359)
Q Consensus 56 ~~~~~IaDlGCs~G~nt~~~~~~i 79 (359)
...++|+|+|=|+|.|++..++..
T Consensus 56 ~~~~~i~e~gfG~G~N~l~~~~~~ 79 (662)
T PRK01747 56 RRRFVIAETGFGTGLNFLATWQAF 79 (662)
T ss_pred CCcEEEEecCcchHHHHHHHHHHH
Confidence 456999999999999999998653
No 264
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=25.05 E-value=78 Score=27.99 Aligned_cols=82 Identities=10% Similarity=0.038 Sum_probs=39.5
Q ss_pred ceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCC--CcccccccCcccccCCC
Q 018250 58 TVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPP--RKYYAAGVPGSFHGRLF 135 (359)
Q Consensus 58 ~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~--~~~~~~~vpgsfy~~l~ 135 (359)
..+|+|-=||+|..-+..+.... ......... +.+++..|.-...-...-.++.. -.-.+.-.-++|.+..+
T Consensus 29 ~~~vlDP~CGsGtiliEaa~~~~-----~~~~~~~~~-~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i~~~~~D~~~l~~ 102 (179)
T PF01170_consen 29 GDVVLDPFCGSGTILIEAALMGA-----NIPPLNDIN-ELKIIGSDIDPKAVRGARENLKAAGVEDYIDFIQWDARELPL 102 (179)
T ss_dssp TS-EEETT-TTSHHHHHHHHHHT-----TTSTTTH-C-H--EEEEESSHHHHHHHHHHHHHTT-CGGEEEEE--GGGGGG
T ss_pred CCEEeecCCCCCHHHHHHHHHhh-----Ccccccccc-cccEEecCCCHHHHHHHHHHHHhcccCCceEEEecchhhccc
Confidence 46899999999987665531111 000000000 23478888766554443333321 01112222245655557
Q ss_pred CCCceeEEEe
Q 018250 136 PKSTLHVVNS 145 (359)
Q Consensus 136 p~~s~d~~~S 145 (359)
+++++|.+++
T Consensus 103 ~~~~~d~Ivt 112 (179)
T PF01170_consen 103 PDGSVDAIVT 112 (179)
T ss_dssp TTSBSCEEEE
T ss_pred ccCCCCEEEE
Confidence 8889999998
No 265
>PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species.
Probab=24.76 E-value=74 Score=28.37 Aligned_cols=26 Identities=23% Similarity=0.423 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHhhccCceeEEEec-cCC
Q 018250 192 DFESILNARAEELVPGGLMVFSLI-TGP 218 (359)
Q Consensus 192 D~~~fL~~Ra~EL~pGG~lvl~~~-g~~ 218 (359)
|++..++. .+-|||||+|++..+ |.+
T Consensus 90 dl~~m~~i-~~vLK~GG~L~l~vPvG~d 116 (177)
T PF03269_consen 90 DLRAMAKI-KCVLKPGGLLFLGVPVGTD 116 (177)
T ss_pred cHHHHHHH-HHhhccCCeEEEEeecCCc
Confidence 45555543 578999999999997 543
No 266
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=23.98 E-value=95 Score=27.92 Aligned_cols=108 Identities=19% Similarity=0.081 Sum_probs=58.8
Q ss_pred cceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCC-CcccccccCcccc----
Q 018250 57 YTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPP-RKYYAAGVPGSFH---- 131 (359)
Q Consensus 57 ~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~-~~~~~~~vpgsfy---- 131 (359)
+..-|++||-|||..|-.+++.-+ .| -.++.-.- +-||-.+.+.+.+ .. ++- |+.+
T Consensus 48 sglpVlElGPGTGV~TkaIL~~gv-------------~~-~~L~~iE~-~~dF~~~L~~~~p~~~-ii~---gda~~l~~ 108 (194)
T COG3963 48 SGLPVLELGPGTGVITKAILSRGV-------------RP-ESLTAIEY-SPDFVCHLNQLYPGVN-IIN---GDAFDLRT 108 (194)
T ss_pred cCCeeEEEcCCccHhHHHHHhcCC-------------Cc-cceEEEEe-CHHHHHHHHHhCCCcc-ccc---cchhhHHH
Confidence 356899999999999988753211 11 11111111 2366655554433 21 111 2222
Q ss_pred -cCCCCCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCcee
Q 018250 132 -GRLFPKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELVPGGLM 210 (359)
Q Consensus 132 -~~l~p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~l 210 (359)
--.++...+|.++|.- --|+ .|. ...-+ .|+.--.-|.+||.+
T Consensus 109 ~l~e~~gq~~D~viS~l--Pll~-~P~----------------------~~~ia-----------ile~~~~rl~~gg~l 152 (194)
T COG3963 109 TLGEHKGQFFDSVISGL--PLLN-FPM----------------------HRRIA-----------ILESLLYRLPAGGPL 152 (194)
T ss_pred HHhhcCCCeeeeEEecc--cccc-CcH----------------------HHHHH-----------HHHHHHHhcCCCCeE
Confidence 1235777889998842 2222 222 22222 344445668889999
Q ss_pred EEEeccCCC
Q 018250 211 VFSLITGPS 219 (359)
Q Consensus 211 vl~~~g~~~ 219 (359)
+....|.-+
T Consensus 153 vqftYgp~s 161 (194)
T COG3963 153 VQFTYGPLS 161 (194)
T ss_pred EEEEecCCC
Confidence 998888554
No 267
>PRK10953 cysJ sulfite reductase subunit alpha; Provisional
Probab=23.47 E-value=6.2e+02 Score=27.05 Aligned_cols=46 Identities=13% Similarity=0.102 Sum_probs=30.3
Q ss_pred HHHHHHHHHHhhccCceeEEEeccCC-CCCCCCCcchhHHHHHHHHHHHHHHHcCCCCh
Q 018250 193 FESILNARAEELVPGGLMVFSLITGP-SGIPFADTVQGATYNFLGSCLWDLAKMGVISE 250 (359)
Q Consensus 193 ~~~fL~~Ra~EL~pGG~lvl~~~g~~-~~~~~~~~~~~~~~~~l~~al~~lv~eGli~~ 250 (359)
|..||+.|... .+.|.+.+.+++|. ..+ -+.++-|.++.++|.+++
T Consensus 468 frsflq~r~~~-~~~~~~~LffG~R~~~~D-----------~lY~~El~~~~~~g~l~~ 514 (600)
T PRK10953 468 FRAFMQQRAAD-GAPGKNWLFFGNPHFTED-----------FLYQVEWQRYVKEGLLTR 514 (600)
T ss_pred HHHHHHHHHHc-CCCCCeEEEeeccCCccc-----------hhHHHHHHHHHHcCCcce
Confidence 44578777643 44578888777765 222 245677888888998753
No 268
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=23.28 E-value=2.1e+02 Score=29.07 Aligned_cols=162 Identities=16% Similarity=0.142 Sum_probs=89.5
Q ss_pred CcceEEEeecCCCCcccHHHHHHHHHHHHHHhhcCCCCCCCceEEecCCCCCchHHHHHhCCCCcccccccCcccccCCC
Q 018250 56 SYTVRIADLGCSVGPNTFISVQNIIEALEFKFQNLSLPVPDFQVFFNDHTENDFNTLFRTLPPRKYYAAGVPGSFHGRLF 135 (359)
Q Consensus 56 ~~~~~IaDlGCs~G~nt~~~~~~ii~~~~~~~~~~~~~~p~~~v~~nDLp~NDFn~lf~~l~~~~~~~~~vpgsfy~~l~ 135 (359)
++..+++=+|-|+|--...+. +|+. --|+...||-.-+- .+++. ......--.|||++
T Consensus 288 ~~a~~vLvlGGGDGLAlRell---------kyP~------~~qI~lVdLDP~mi-ela~~---~~vlr~~N~~sf~d--- 345 (508)
T COG4262 288 RGARSVLVLGGGDGLALRELL---------KYPQ------VEQITLVDLDPRMI-ELASH---ATVLRALNQGSFSD--- 345 (508)
T ss_pred cccceEEEEcCCchHHHHHHH---------hCCC------cceEEEEecCHHHH-HHhhh---hhHhhhhccCCccC---
Confidence 557889999999998666662 3321 24788888865331 12210 01111122467763
Q ss_pred CCCceeEEEecCcccccCCCCcccccccccccCCCceee---cCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceeEE
Q 018250 136 PKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKC---TRFMKGVHETFQAQFRSDFESILNARAEELVPGGLMVF 212 (359)
Q Consensus 136 p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~---~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lvl 212 (359)
-.++ +++--|++||.+.-... | .|.+ ..+.|...+.|.. .|-..-++.|+++|+||+
T Consensus 346 --pRv~-Vv~dDAf~wlr~a~~~f-D---------~vIVDl~DP~tps~~rlYS~-------eFY~ll~~~l~e~Gl~Vv 405 (508)
T COG4262 346 --PRVT-VVNDDAFQWLRTAADMF-D---------VVIVDLPDPSTPSIGRLYSV-------EFYRLLSRHLAETGLMVV 405 (508)
T ss_pred --CeeE-EEeccHHHHHHhhcccc-c---------EEEEeCCCCCCcchhhhhhH-------HHHHHHHHhcCcCceEEE
Confidence 2344 56778999998654421 1 1222 2345666677765 456667889999999998
Q ss_pred EeccCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCChhhhccCCccccCCCHHHHHHHHHhCC
Q 018250 213 SLITGPSGIPFADTVQGATYNFLGSCLWDLAKMGVISEEKARTFNVPAYFPYVEELESLIQRNG 276 (359)
Q Consensus 213 ~~~g~~~~~~~~~~~~~~~~~~l~~al~~lv~eGli~~e~~d~f~~P~y~ps~~E~~~~i~~~G 276 (359)
.-...=.. + ..+|. +...+-+.|. ..+....|.||-.|+--++...|
T Consensus 406 Qags~y~t-p------~vfw~----i~aTik~AG~------~~~Pyhv~VPTFGeWGf~l~~~~ 452 (508)
T COG4262 406 QAGSPYFT-P------RVFWR----IDATIKSAGY------RVWPYHVHVPTFGEWGFILAAPG 452 (508)
T ss_pred ecCCCccC-C------ceeee----ehhHHHhCcc------eeeeeEEecCcccccceeecccc
Confidence 76422111 0 01222 1222223342 33455567788888865555444
No 269
>PF10357 Kin17_mid: Domain of Kin17 curved DNA-binding protein; InterPro: IPR019447 This entry represents the conserved central 169 residue region of the Kin17 DNA/RNA-binding proteins. The N-terminal region of Kin17 contains a zinc-finger domain, while in the human and mouse proteins there is a RecA-like domain found in the C-terminal region. In humans, Kin17 protein forms intra-nuclear foci during cell proliferation and is re-distributed in the nucleoplasm during the cell cycle []. ; PDB: 2V1N_A.
Probab=22.92 E-value=74 Score=27.00 Aligned_cols=25 Identities=20% Similarity=0.384 Sum_probs=20.5
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHH
Q 018250 178 MKGVHETFQAQFRSDFESILNARAE 202 (359)
Q Consensus 178 ~~~~~~~y~~Q~~~D~~~fL~~Ra~ 202 (359)
|..+...|.+||++||-..|+.|..
T Consensus 10 ~~k~i~~yS~eFe~~Fl~lLr~~hg 34 (127)
T PF10357_consen 10 PGKFIDEYSEEFEKDFLRLLRRRHG 34 (127)
T ss_dssp GGG-HHHHHHHHHHHHHHHHHHHTS
T ss_pred hhhHHHHHHHHHHHHHHHHHHHhcC
Confidence 5567899999999999999988653
No 270
>TIGR00730 conserved hypothetical protein, DprA/Smf-related, family 2. This model represents one branch of a subfamily of proteins of unknown function. Both PSI-BLAST and weak hits by this model show a low level of similarity to and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting that the branches may have distinct functions.
Probab=22.26 E-value=1.5e+02 Score=26.39 Aligned_cols=41 Identities=22% Similarity=0.175 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHcCCCChhhhccCCccccCCCHHHHHHHHHh
Q 018250 231 TYNFLGSCLWDLAKMGVISEEKARTFNVPAYFPYVEELESLIQR 274 (359)
Q Consensus 231 ~~~~l~~al~~lv~eGli~~e~~d~f~~P~y~ps~~E~~~~i~~ 274 (359)
+|+.|.+-++.|+++|.++++..+ ......+++|+-+.|++
T Consensus 137 ~~~~l~~~l~~~~~~gfi~~~~~~---~~~~~d~~~e~~~~i~~ 177 (178)
T TIGR00730 137 HFDGLVEWLKYSIQEGFISESHLK---LIHVVSRPDELIEQVQN 177 (178)
T ss_pred hHHHHHHHHHHHHHCCCCCHHHcC---cEEEcCCHHHHHHHHHh
Confidence 678888888899999999887665 44467888888887753
No 271
>COG2609 AceE Pyruvate dehydrogenase complex, dehydrogenase (E1) component [Energy production and conversion]
Probab=20.89 E-value=4.4e+02 Score=28.96 Aligned_cols=129 Identities=12% Similarity=0.115 Sum_probs=67.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccCceeEEEeccCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCCChhh-----hcc
Q 018250 181 VHETFQAQFRSDFESILNARAEELVPGGLMVFSLITGPSGIPFADTVQGATYNFLGSCLWDLAKMGVISEEK-----ART 255 (359)
Q Consensus 181 ~~~~y~~Q~~~D~~~fL~~Ra~EL~pGG~lvl~~~g~~~~~~~~~~~~~~~~~~l~~al~~lv~eGli~~e~-----~d~ 255 (359)
...+|+.. |..+|..|.--=.+.+++ ..|+|.++.++. .....|..|+++ +|-.-== +..
T Consensus 199 ~~aiyqAr----f~kYL~~RGl~~~~~~~v-~afLGDgEmDEp------es~gAi~~A~re----~LdNlifVincNlQr 263 (887)
T COG2609 199 IQAIYQAR----FLKYLEARGLKDTSDQKV-WAFLGDGEMDEP------ESRGAITEAARE----KLDNLIFVINCNLQR 263 (887)
T ss_pred HHHHHHHH----HHHHHHhcCCcCCCCCeE-EEEecCcccCCc------hhhHHHHHHHHh----cCCceEEEEecchhh
Confidence 45677664 456887765544556665 456677665432 245667777663 3210000 011
Q ss_pred CCccccCC--CHHHHHHHHHhCCceeEeEEEEeecCCCCCC----CChhHHHHHHHHHhhhhhh---hccCHHHHHHHHH
Q 018250 256 FNVPAYFP--YVEELESLIQRNGHFAMERMQQLDQPMRHKT----FPAQFYLSHLRAVLEGLIG---KHFGEELLENIFN 326 (359)
Q Consensus 256 f~~P~y~p--s~~E~~~~i~~~G~F~i~~le~~~~~~~~~~----~~~~~v~~~iRa~~~~~l~---~~~~e~i~delf~ 326 (359)
..-|.--. =..|+..+++-.| |.|.++.--.+ |++ .....+.+|+.....+... ..=|..+.+-||.
T Consensus 264 LDgpVrgngkiiqelE~~FrgAG-W~VikviWg~~---wd~ll~kd~~gkL~~~m~e~~dgdyqt~kakdGayvRehff~ 339 (887)
T COG2609 264 LDGPVRGNGKIIQELEGIFRGAG-WNVIKVIWGRR---WDELLAKDTGGKLRQLMNETVDGDYQTFKAKDGAYVREHFFG 339 (887)
T ss_pred cCCcccCCchhHHHHHHHhccCC-ceEEEEEeccc---HHHHhcccCcchHHHHHHhcccchhhhhcccccHHHHHHHhc
Confidence 22233333 5789999999999 99877654322 221 1223555666555443332 1123445555555
Q ss_pred HH
Q 018250 327 HI 328 (359)
Q Consensus 327 r~ 328 (359)
+|
T Consensus 340 ~~ 341 (887)
T COG2609 340 RY 341 (887)
T ss_pred cC
Confidence 54
No 272
>PF08714 Fae: Formaldehyde-activating enzyme (Fae); InterPro: IPR014826 This family consists of formaldehyde-activating enzyme, or the corresponding domain of longer, bifunctional proteins. It links formaldehyde to the C1 carrier tetrahydromethanopterin (H4MPT), an analog of tetrahydrofolate, and is common among species with H4MPT []. The ribulose monophosphate (RuMP) pathway, which removes the toxic metabolite formaldehyde by assimilation, runs in the opposite direction in some species to produce ribulose 5-phosphate for nucleotide biosynthesis, leaving formaldehyde as an additional metabolite. In these species, formaldehyde activating enzyme may occur as a fusion protein with D-arabino 3-hexulose 6-phosphate formaldehyde lyase from the RuMP pathway.; GO: 0016840 carbon-nitrogen lyase activity, 0016051 carbohydrate biosynthetic process; PDB: 1Y60_A 1Y5Y_D.
Probab=20.35 E-value=1.4e+02 Score=26.29 Aligned_cols=27 Identities=19% Similarity=0.352 Sum_probs=20.9
Q ss_pred hHHHHHHHHHHHHHHHcCCCChhhhcc
Q 018250 229 GATYNFLGSCLWDLAKMGVISEEKART 255 (359)
Q Consensus 229 ~~~~~~l~~al~~lv~eGli~~e~~d~ 255 (359)
+..-..+.++..|.|.||.|++++.|+
T Consensus 77 GpaQaavA~AVaD~V~eG~iP~~~a~d 103 (159)
T PF08714_consen 77 GPAQAAVAKAVADAVEEGIIPKDEADD 103 (159)
T ss_dssp THHHHHHHHHHHHHHHTTSS-TTTGGG
T ss_pred CHHHHHHHHHHHHHHHcCCCChhhcCc
Confidence 334467889999999999999988765
No 273
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=20.23 E-value=1.8e+02 Score=29.18 Aligned_cols=56 Identities=16% Similarity=0.321 Sum_probs=40.6
Q ss_pred cccccCC--CCCCceeEEEecCcccccCCCCcccccccccccCCCceeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 018250 128 GSFHGRL--FPKSTLHVVNSFNAMHWLSKTPKVNMLEKSLEWNQGSIKCTRFMKGVHETFQAQFRSDFESILNARAEELV 205 (359)
Q Consensus 128 gsfy~~l--~p~~s~d~~~S~~alHWLs~~p~~~~~~~~~~~n~g~i~~~~~~~~~~~~y~~Q~~~D~~~fL~~Ra~EL~ 205 (359)
+|+-+.| .|++|+|.+.=+=.+-|++. . ++....+.-.+.++
T Consensus 282 ~si~~~L~~~~~~s~~~~vL~D~~Dwm~~--~----------------------------------~~~~~~~~l~~~~~ 325 (380)
T PF11899_consen 282 DSIEEVLRRLPPGSFDRFVLSDHMDWMDP--E----------------------------------QLNEEWQELARTAR 325 (380)
T ss_pred ccHHHHHHhCCCCCeeEEEecchhhhCCH--H----------------------------------HHHHHHHHHHHHhC
Confidence 3554444 58899999999999999763 1 22334445667889
Q ss_pred cCceeEEEeccCCC
Q 018250 206 PGGLMVFSLITGPS 219 (359)
Q Consensus 206 pGG~lvl~~~g~~~ 219 (359)
|||++++=..+...
T Consensus 326 pgaRV~~Rsa~~~~ 339 (380)
T PF11899_consen 326 PGARVLWRSAAVPP 339 (380)
T ss_pred CCCEEEEeeCCCCC
Confidence 99999999988775
No 274
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=20.10 E-value=75 Score=31.07 Aligned_cols=33 Identities=24% Similarity=0.252 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccCceeEEEecc
Q 018250 184 TFQAQFRSDFESILNARAEELVPGGLMVFSLIT 216 (359)
Q Consensus 184 ~y~~Q~~~D~~~fL~~Ra~EL~pGG~lvl~~~g 216 (359)
.+-.+--.-+..+|..-.+-|+|||++++..+-
T Consensus 211 I~VN~EL~~L~~~L~~a~~~L~~gGrl~VISFH 243 (310)
T PF01795_consen 211 IAVNDELEELERGLEAAPDLLKPGGRLVVISFH 243 (310)
T ss_dssp HHHCTHHHHHHHHHHHHHHHEEEEEEEEEEESS
T ss_pred HHhccHHHHHHHHHHHHHHHhcCCcEEEEEEec
Confidence 344444566889999999999999999999873
Done!