BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 018252
(359 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O81027|HMGCL_ARATH Hydroxymethylglutaryl-CoA lyase, mitochondrial OS=Arabidopsis
thaliana GN=HMGCL PE=1 SV=2
Length = 468
Score = 506 bits (1304), Expect = e-143, Method: Compositional matrix adjust.
Identities = 251/352 (71%), Positives = 288/352 (81%), Gaps = 8/352 (2%)
Query: 1 MSSLEEPLGLDKLPSMSTIDRIQRFSSNACRPSGDGMGMGSCWIEGSSCSTSNSYDEDYD 60
MSSLEEPL DKLPSMST+DRIQRFSS ACRP D +GMG WIEG C+TSNS +D
Sbjct: 36 MSSLEEPLSFDKLPSMSTMDRIQRFSSGACRPRDD-VGMGHRWIEGRDCTTSNSCIDDDK 94
Query: 61 EYTREAFPWRRHTRDMSHGDSFSRRTVSLGRNHKMFGSACD-------IYNSNCNDKDIR 113
+ +E+FPWRRHTR +S G+ R GR + G+ + Y++ N+
Sbjct: 95 SFAKESFPWRRHTRKLSEGEHMFRNISFAGRTSTVSGTLRESKSFKEQKYSTFSNENGTS 154
Query: 114 DITNKFLKGIPRFVKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVSP 173
I+NK KGIP+FVKIVEVGPRDGLQNEKN VPT VKVELI+RLVSSGLPVVEATSFVSP
Sbjct: 155 HISNKISKGIPKFVKIVEVGPRDGLQNEKNIVPTSVKVELIQRLVSSGLPVVEATSFVSP 214
Query: 174 KWVPQLADARDVMEAVRDLEGARLPVLTPNLKGFEAAIAAGAKEVAIFASASEAFSKSNI 233
KWVPQLADA+DVM+AV L+GARLPVLTPNLKGF+AA++AGAKEVAIFASASE+FS SNI
Sbjct: 215 KWVPQLADAKDVMDAVNTLDGARLPVLTPNLKGFQAAVSAGAKEVAIFASASESFSLSNI 274
Query: 234 NCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFE 293
NC+IE+SL+RYR VA AAK S+PVRGYVSCVVGCPVEG + PSKVAYV KEL+DMGCFE
Sbjct: 275 NCTIEESLLRYRVVATAAKEHSVPVRGYVSCVVGCPVEGPVLPSKVAYVVKELYDMGCFE 334
Query: 294 ISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQV 345
ISLGDTIG+GTPG+VVPMLEAVMAVVP +KLAVH HDTYGQ+L NIL+SLQ+
Sbjct: 335 ISLGDTIGIGTPGSVVPMLEAVMAVVPADKLAVHFHDTYGQALANILVSLQM 386
>sp|Q29448|HMGCL_BOVIN Hydroxymethylglutaryl-CoA lyase, mitochondrial OS=Bos taurus
GN=HMGCL PE=2 SV=2
Length = 325
Score = 305 bits (781), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 147/234 (62%), Positives = 180/234 (76%)
Query: 112 IRDITNKFLKGIPRFVKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFV 171
+R ++ + P+ VKIVEVGPRDGLQNEKN VPT VK++LI L +GLPVVEATSFV
Sbjct: 18 LRAVSTSSVGTFPKQVKIVEVGPRDGLQNEKNIVPTPVKIKLIDMLSEAGLPVVEATSFV 77
Query: 172 SPKWVPQLADARDVMEAVRDLEGARLPVLTPNLKGFEAAIAAGAKEVAIFASASEAFSKS 231
SPKWVPQ+AD +V++ ++ G PVLTPN KGF+AA+AAGAKEVAIF +ASE F+K
Sbjct: 78 SPKWVPQMADHAEVLKGIQKFPGVNYPVLTPNFKGFQAAVAAGAKEVAIFGAASELFTKK 137
Query: 232 NINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGC 291
NINCSI++SL R+ + AA+ I VRGYVSCV+GCP EG I P+KVA V K+L+ MGC
Sbjct: 138 NINCSIDESLQRFDEILKAARAAGISVRGYVSCVLGCPYEGKISPAKVAEVTKKLYSMGC 197
Query: 292 FEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQV 345
+EISLGDTIGVGTPG + ML AV+ VPV LAVH HDTYGQ+L N L +LQ+
Sbjct: 198 YEISLGDTIGVGTPGAMKDMLSAVLQEVPVTALAVHCHDTYGQALANTLTALQM 251
>sp|P35915|HMGCL_CHICK Hydroxymethylglutaryl-CoA lyase, mitochondrial OS=Gallus gallus
GN=HMGCL PE=1 SV=1
Length = 298
Score = 305 bits (781), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 146/222 (65%), Positives = 180/222 (81%)
Query: 124 PRFVKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADAR 183
P+ VK+VEVGPRDGLQNEK+ VPT VK+ LI L +GLPV+EATSFVSP+WVPQ+AD
Sbjct: 3 PQRVKVVEVGPRDGLQNEKSVVPTPVKIRLIDMLSETGLPVIEATSFVSPRWVPQMADHA 62
Query: 184 DVMEAVRDLEGARLPVLTPNLKGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVR 243
+VM+ + L G PVLTPNLKGF+AA+AAGAKEV+IF +ASE F+K NINCSIE+SL R
Sbjct: 63 EVMQGINKLPGVSYPVLTPNLKGFQAAVAAGAKEVSIFGAASELFTKKNINCSIEESLER 122
Query: 244 YRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGVG 303
+ V +AA+ SIPVRGYVSCV+GCP EG I +KVA V+K+++ MGC+EISLGD IG+G
Sbjct: 123 FSEVMNAARAASIPVRGYVSCVLGCPYEGNISAAKVAEVSKKMYSMGCYEISLGDRIGIG 182
Query: 304 TPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQV 345
TPG++ ML AVM VPV LAVH HDTYGQ+L NIL++LQ+
Sbjct: 183 TPGSMKEMLAAVMKEVPVGALAVHCHDTYGQALANILVALQM 224
>sp|P97519|HMGCL_RAT Hydroxymethylglutaryl-CoA lyase, mitochondrial OS=Rattus norvegicus
GN=Hmgcl PE=2 SV=1
Length = 325
Score = 303 bits (776), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 144/234 (61%), Positives = 181/234 (77%)
Query: 112 IRDITNKFLKGIPRFVKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFV 171
+R + + +P+ VKIVEVGPRDGLQNEK+ VPT VK++LI L +GLPV+EATSFV
Sbjct: 18 LRAASTSSMGTLPKRVKIVEVGPRDGLQNEKSIVPTPVKIKLIDMLSEAGLPVIEATSFV 77
Query: 172 SPKWVPQLADARDVMEAVRDLEGARLPVLTPNLKGFEAAIAAGAKEVAIFASASEAFSKS 231
SPKWVPQ+AD DV++ ++ G PVLTPN+KGFE A+AAGAKEV+IF +ASE F++
Sbjct: 78 SPKWVPQMADHSDVLKGIQKFPGINYPVLTPNMKGFEEAVAAGAKEVSIFGAASELFTRK 137
Query: 232 NINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGC 291
N+NCSIE+S R+ V AA+ SI VRGYVSC +GCP EG + P+KVA VAK+L+ MGC
Sbjct: 138 NVNCSIEESFQRFDGVMQAARAASISVRGYVSCALGCPYEGKVSPAKVAEVAKKLYSMGC 197
Query: 292 FEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQV 345
+EISLGDTIGVGTPG + ML AV+ VPV LAVH HDTYGQ+L N L++LQ+
Sbjct: 198 YEISLGDTIGVGTPGLMKDMLTAVLHEVPVAALAVHCHDTYGQALANTLVALQM 251
>sp|P38060|HMGCL_MOUSE Hydroxymethylglutaryl-CoA lyase, mitochondrial OS=Mus musculus
GN=Hmgcl PE=1 SV=2
Length = 325
Score = 302 bits (773), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 143/235 (60%), Positives = 179/235 (76%)
Query: 111 DIRDITNKFLKGIPRFVKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSF 170
+R ++ + +P+ VKIVEVGPRDGLQNEK+ VPT VK+ LI L +GLPV+EATSF
Sbjct: 17 SLRAVSTSSMGTLPKQVKIVEVGPRDGLQNEKSIVPTPVKIRLIDMLSEAGLPVIEATSF 76
Query: 171 VSPKWVPQLADARDVMEAVRDLEGARLPVLTPNLKGFEAAIAAGAKEVAIFASASEAFSK 230
VSPKWVPQ+AD DV++ ++ G PVLTPN+KGFE A+AAGAKEV++F + SE F++
Sbjct: 77 VSPKWVPQMADHSDVLKGIQKFPGINYPVLTPNMKGFEEAVAAGAKEVSVFGAVSELFTR 136
Query: 231 SNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMG 290
N NCSIE+S R+ V AA+ SI VRGYVSC +GCP EG + P+KVA VAK+L+ MG
Sbjct: 137 KNANCSIEESFQRFAGVMQAAQAASISVRGYVSCALGCPYEGKVSPAKVAEVAKKLYSMG 196
Query: 291 CFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQV 345
C+EISLGDTIGVGTPG + ML AVM VPV LAVH HDTYGQ+L N L++LQ+
Sbjct: 197 CYEISLGDTIGVGTPGLMKDMLTAVMHEVPVTALAVHCHDTYGQALANTLVALQM 251
>sp|Q8JZS7|HMGC2_MOUSE 3-hydroxymethyl-3-methylglutaryl-CoA lyase, cytoplasmic OS=Mus
musculus GN=Hmgcll1 PE=2 SV=1
Length = 343
Score = 302 bits (773), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 141/226 (62%), Positives = 178/226 (78%)
Query: 120 LKGIPRFVKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQL 179
L G+P +VKIVEVGPRDGLQNEK VPT +K+ELI +L +GL V+E TSFVS +WVPQ+
Sbjct: 41 LPGLPEYVKIVEVGPRDGLQNEKVIVPTDIKIELINQLSQTGLSVIEVTSFVSSRWVPQM 100
Query: 180 ADARDVMEAVRDLEGARLPVLTPNLKGFEAAIAAGAKEVAIFASASEAFSKSNINCSIED 239
AD +VM +R G R PVLTPNL+GF+ A+AAGA E+A+F +ASE+FSK NINCSIE+
Sbjct: 101 ADHAEVMRGIRQYPGVRYPVLTPNLQGFQHAVAAGATEIAVFGAASESFSKKNINCSIEE 160
Query: 240 SLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDT 299
S+ R++ V +A+ + IPVRGYVSC +GCP EG+I P KV V+K L+ MGC+EISLGDT
Sbjct: 161 SMGRFQEVISSARHMDIPVRGYVSCALGCPYEGSITPQKVTEVSKRLYGMGCYEISLGDT 220
Query: 300 IGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQV 345
IGVGTPG++ MLE+VM +P LAVH HDTYGQ+L NIL +LQ+
Sbjct: 221 IGVGTPGSMKMMLESVMKEIPPGALAVHCHDTYGQALANILTALQM 266
>sp|Q5R9E1|HMGCL_PONAB Hydroxymethylglutaryl-CoA lyase, mitochondrial OS=Pongo abelii
GN=HMGCL PE=2 SV=1
Length = 325
Score = 300 bits (769), Expect = 8e-81, Method: Compositional matrix adjust.
Identities = 144/235 (61%), Positives = 179/235 (76%)
Query: 111 DIRDITNKFLKGIPRFVKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSF 170
+R ++ + +P+ VKIVEVGPRDGLQNEKN V T VK++LI L +GL V+E TSF
Sbjct: 17 SLRAVSTSSMGTLPKRVKIVEVGPRDGLQNEKNIVSTPVKIKLIDMLSEAGLSVIETTSF 76
Query: 171 VSPKWVPQLADARDVMEAVRDLEGARLPVLTPNLKGFEAAIAAGAKEVAIFASASEAFSK 230
VSPKWVPQ+ D +V++ ++ G PVLTPNLKGFEAA+AAGAKEVAIF +ASE F+K
Sbjct: 77 VSPKWVPQMGDHTEVLKGIQKFPGINYPVLTPNLKGFEAAVAAGAKEVAIFGAASELFTK 136
Query: 231 SNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMG 290
NINCSIE+S R+ A+ AA+ +I VRGYVSC +GCP EG I P+KVA V K+L+ MG
Sbjct: 137 KNINCSIEESFQRFDAILKAAQSANISVRGYVSCALGCPYEGKISPAKVAEVTKKLYSMG 196
Query: 291 CFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQV 345
C+EISLGDTIGVGTPG + ML AVM VP+ LAVH HDTYGQ+L N L++LQ+
Sbjct: 197 CYEISLGDTIGVGTPGIMKGMLSAVMQEVPLAALAVHCHDTYGQALANTLMALQM 251
>sp|Q8HXZ6|HMGCL_MACFA Hydroxymethylglutaryl-CoA lyase, mitochondrial OS=Macaca
fascicularis GN=HMGCL PE=2 SV=1
Length = 325
Score = 298 bits (762), Expect = 6e-80, Method: Compositional matrix adjust.
Identities = 143/234 (61%), Positives = 179/234 (76%)
Query: 112 IRDITNKFLKGIPRFVKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFV 171
+R ++ + +P+ VKIVEVGPRDGLQNEKN V T VK++LI L +GL V+EATSFV
Sbjct: 18 LRAVSTSSMDTLPKQVKIVEVGPRDGLQNEKNIVSTPVKIKLIDMLSEAGLSVIEATSFV 77
Query: 172 SPKWVPQLADARDVMEAVRDLEGARLPVLTPNLKGFEAAIAAGAKEVAIFASASEAFSKS 231
SPKWVPQ+AD +V++ ++ G PVL PNLKGFEAA+AAGAKEV+IF +ASE F+K
Sbjct: 78 SPKWVPQMADHAEVLKGIQKFPGITYPVLIPNLKGFEAAVAAGAKEVSIFGAASELFTKK 137
Query: 232 NINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGC 291
N+NCSIE+S R+ A+ AA+ +I VRGYVSCV+GCP EG I P+KVA V K+ + MGC
Sbjct: 138 NVNCSIEESFQRFDAILKAAQSANISVRGYVSCVLGCPYEGKISPAKVAEVTKKFYSMGC 197
Query: 292 FEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQV 345
+EISLGDTIGVGTPG + ML AVM VP LAVH HDTYGQ+L N L++LQ+
Sbjct: 198 YEISLGDTIGVGTPGIMKDMLSAVMQEVPPAALAVHCHDTYGQALANTLMALQM 251
>sp|Q8TB92|HMGC2_HUMAN 3-hydroxymethyl-3-methylglutaryl-CoA lyase, cytoplasmic OS=Homo
sapiens GN=HMGCLL1 PE=1 SV=3
Length = 370
Score = 298 bits (762), Expect = 6e-80, Method: Compositional matrix adjust.
Identities = 138/226 (61%), Positives = 175/226 (77%)
Query: 120 LKGIPRFVKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQL 179
L G+P FVKIVEVGPRDGLQNEK VPT +K+E I RL +GL V+E TSFVS +WVPQ+
Sbjct: 71 LSGLPEFVKIVEVGPRDGLQNEKVIVPTDIKIEFINRLSQTGLSVIEVTSFVSSRWVPQM 130
Query: 180 ADARDVMEAVRDLEGARLPVLTPNLKGFEAAIAAGAKEVAIFASASEAFSKSNINCSIED 239
AD +VM+ + G R PVLTPNL+GF A+AAGA E+++F +ASE+FSK NINCSIE+
Sbjct: 131 ADHTEVMKGIHQYPGVRYPVLTPNLQGFHHAVAAGATEISVFGAASESFSKKNINCSIEE 190
Query: 240 SLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDT 299
S+ ++ V +A+ ++IP RGYVSC +GCP EG+I P KV V+K L+ MGC+EISLGDT
Sbjct: 191 SMGKFEEVVKSARHMNIPARGYVSCALGCPYEGSITPQKVTEVSKRLYGMGCYEISLGDT 250
Query: 300 IGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQV 345
IGVGTPG++ MLE+VM +P LAVH HDTYGQ+L NIL +LQ+
Sbjct: 251 IGVGTPGSMKRMLESVMKEIPPGALAVHCHDTYGQALANILTALQM 296
>sp|P35914|HMGCL_HUMAN Hydroxymethylglutaryl-CoA lyase, mitochondrial OS=Homo sapiens
GN=HMGCL PE=1 SV=2
Length = 325
Score = 297 bits (761), Expect = 7e-80, Method: Compositional matrix adjust.
Identities = 142/235 (60%), Positives = 177/235 (75%)
Query: 111 DIRDITNKFLKGIPRFVKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSF 170
+R ++ + +P+ VKIVEVGPRDGLQNEKN V T VK++LI L +GL V+E TSF
Sbjct: 17 SLRAVSTSSMGTLPKRVKIVEVGPRDGLQNEKNIVSTPVKIKLIDMLSEAGLSVIETTSF 76
Query: 171 VSPKWVPQLADARDVMEAVRDLEGARLPVLTPNLKGFEAAIAAGAKEVAIFASASEAFSK 230
VSPKWVPQ+ D +V++ ++ G PVLTPNLKGFEAA+AAGAKEV IF +ASE F+K
Sbjct: 77 VSPKWVPQMGDHTEVLKGIQKFPGINYPVLTPNLKGFEAAVAAGAKEVVIFGAASELFTK 136
Query: 231 SNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMG 290
NINCSIE+S R+ A+ AA+ +I VRGYVSC +GCP EG I P+KVA V K+ + MG
Sbjct: 137 KNINCSIEESFQRFDAILKAAQSANISVRGYVSCALGCPYEGKISPAKVAEVTKKFYSMG 196
Query: 291 CFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQV 345
C+EISLGDTIGVGTPG + ML AVM VP+ LAVH HDTYGQ+L N L++LQ+
Sbjct: 197 CYEISLGDTIGVGTPGIMKDMLSAVMQEVPLAALAVHCHDTYGQALANTLMALQM 251
>sp|D4A5C3|HMGC2_RAT 3-hydroxymethyl-3-methylglutaryl-CoA lyase, cytoplasmic OS=Rattus
norvegicus GN=Hmgcll1 PE=1 SV=1
Length = 343
Score = 293 bits (751), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 136/226 (60%), Positives = 174/226 (76%)
Query: 120 LKGIPRFVKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQL 179
L G+P +VKIVEVGPRDGLQNEK VPT +K+E I +L +GL V+E TSFVS +WVPQ+
Sbjct: 41 LSGLPEYVKIVEVGPRDGLQNEKVIVPTDIKIEFINQLSQTGLSVIEVTSFVSSRWVPQM 100
Query: 180 ADARDVMEAVRDLEGARLPVLTPNLKGFEAAIAAGAKEVAIFASASEAFSKSNINCSIED 239
AD +VM + G R PVL PNL+G + A+AAGA E+A+F +ASE+FSK NINCSIE+
Sbjct: 101 ADHAEVMGGIHQYPGVRYPVLVPNLQGLQHAVAAGATEIAVFGAASESFSKKNINCSIEE 160
Query: 240 SLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDT 299
S+ R+ V +A+ ++IPVRGYVSC +GCP EG+I P KV V+K L+ MGC+EISLGDT
Sbjct: 161 SMGRFEQVISSARHMNIPVRGYVSCALGCPYEGSIMPQKVTEVSKRLYSMGCYEISLGDT 220
Query: 300 IGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQV 345
+GVGTPG++ MLE+VM +P LAVH HDTYGQ+L NIL +LQ+
Sbjct: 221 VGVGTPGSMKTMLESVMKEIPPGALAVHCHDTYGQALANILTALQM 266
>sp|A8WG57|HMGC2_DANRE 3-hydroxymethyl-3-methylglutaryl-CoA lyase, cytoplasmic OS=Danio
rerio GN=hmgcll1 PE=2 SV=1
Length = 335
Score = 292 bits (747), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 141/226 (62%), Positives = 173/226 (76%)
Query: 120 LKGIPRFVKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQL 179
L +P +VKIVEVGPRDGLQNEK VPT VK++LI L +GLPV+EATSFVS KWV Q+
Sbjct: 36 LPKLPVYVKIVEVGPRDGLQNEKEIVPTEVKIQLIDLLSQTGLPVIEATSFVSSKWVAQM 95
Query: 180 ADARDVMEAVRDLEGARLPVLTPNLKGFEAAIAAGAKEVAIFASASEAFSKSNINCSIED 239
AD V++ ++ R PVLTPN++GF+AA+AAGA EVA+F SASE FS+ NINCSIE+
Sbjct: 96 ADHTAVLKGIKRSPDVRYPVLTPNIQGFQAAVAAGANEVAVFGSASETFSRKNINCSIEE 155
Query: 240 SLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDT 299
SL R+ V AAK IPVRGYVSC +GCP EG + PS+V VAK L ++GC+E+SLGDT
Sbjct: 156 SLQRFEQVVSAAKQEGIPVRGYVSCALGCPYEGQVKPSQVTKVAKRLFELGCYEVSLGDT 215
Query: 300 IGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQV 345
IGVGT G++ ML V+ VP LAVH HDTYGQ+LPNILI+LQ+
Sbjct: 216 IGVGTAGSMAEMLSDVLTEVPAGALAVHCHDTYGQALPNILIALQM 261
>sp|P13703|HMGCL_PSEMV Hydroxymethylglutaryl-CoA lyase OS=Pseudomonas mevalonii GN=mvaB
PE=3 SV=1
Length = 301
Score = 228 bits (581), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 110/217 (50%), Positives = 147/217 (67%)
Query: 127 VKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVM 186
VK+ EVGPRDGLQNE+ + +V LI L +GL +EA +FVSP+WVPQ+A + +V+
Sbjct: 4 VKVFEVGPRDGLQNERQPLSVAARVGLIGELAGTGLRHIEAGAFVSPRWVPQMAGSDEVL 63
Query: 187 EAVRDLEGARLPVLTPNLKGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRA 246
+ +G L PN +GFEAA AG +EVA+FA+ASEAFS++NINCSI++S R+
Sbjct: 64 RQLPSNDGVSYTALVPNRQGFEAAQRAGCREVAVFAAASEAFSRNNINCSIDESFERFTP 123
Query: 247 VAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGVGTPG 306
V AA SI VRGYVSCV+GCP GA+ P VA VA+ L+++GC+EISLGDTIG G P
Sbjct: 124 VLRAANEASIRVRGYVSCVLGCPFSGAVAPEAVAKVARRLYELGCYEISLGDTIGAGRPD 183
Query: 307 TVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISL 343
+ E +PV LA H HDT+G ++ N+ +L
Sbjct: 184 ETAQLFELCARQLPVAALAGHFHDTWGMAIANVHAAL 220
>sp|O34873|HMGCL_BACSU Hydroxymethylglutaryl-CoA lyase YngG OS=Bacillus subtilis (strain
168) GN=yngG PE=1 SV=1
Length = 299
Score = 183 bits (464), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 93/222 (41%), Positives = 133/222 (59%)
Query: 124 PRFVKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADAR 183
P+ V I EVGPRDGLQNE + T K+ I +L +GL +E TSFV PKW+P L DA
Sbjct: 4 PKKVTIKEVGPRDGLQNEPVWIATEDKITWINQLSRTGLSYIEITSFVHPKWIPALRDAI 63
Query: 184 DVMEAVRDLEGARLPVLTPNLKGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVR 243
DV + + +G L PN +G E A+ G E +F SASE ++ NIN S +SL
Sbjct: 64 DVAKGIDREKGVTYAALVPNQRGLENALEGGINEACVFMSASETHNRKNINKSTSESLHI 123
Query: 244 YRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGVG 303
+ V + A+ ++ R Y+S V GCP E +P +V +++ L + G E+SLGDTIG
Sbjct: 124 LKQVNNDAQKANLTTRAYLSTVFGCPYEKDVPIEQVIRLSEALFEFGISELSLGDTIGAA 183
Query: 304 TPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQV 345
P V +LEA++A P ++A+H HDT G +L N++ +LQ+
Sbjct: 184 NPAQVETVLEALLARFPANQIALHFHDTRGTALANMVTALQM 225
>sp|B8I1T7|LEU1_CLOCE 2-isopropylmalate synthase OS=Clostridium cellulolyticum (strain
ATCC 35319 / DSM 5812 / JCM 6584 / H10) GN=leuA PE=3
SV=1
Length = 508
Score = 47.0 bits (110), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 54/232 (23%), Positives = 104/232 (44%), Gaps = 23/232 (9%)
Query: 123 IPRFVKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEAT-SFVSPKWVPQLAD 181
+ R +KI + RDG Q + K+E+ ++LV G+ V+E + SP D
Sbjct: 1 MARTIKIFDTTLRDGEQTPGVNLNLQEKLEIAKQLVRLGVDVIEGGFAIASP------GD 54
Query: 182 ARDVMEAVRDLEGARLPVLTPNL-----KGFEAAIAAGAKEVAIFASASEAFSKSNINCS 236
+M R+L+G + L ++ + +EA A + + F + S+ K + +
Sbjct: 55 FESIMTLSRNLKGVTIASLCRSVEKDIDRAWEAVQYAESPRIHTFIATSDIHMKYKLKMT 114
Query: 237 IEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAY-VAKELHDMGCFEIS 295
E+ L R ++ AK GY S V + + + Y V + + G ++
Sbjct: 115 EEEVLERAVSMVKRAK-------GYCSNVEFSAEDASRTREEFLYRVVEAVIKAGATTVN 167
Query: 296 LGDTIGVGTPGTVVPMLEAVMAVVP-VEK--LAVHLHDTYGQSLPNILISLQ 344
+ DT+G TP ++ + VP ++K ++VH H+ G ++ N L +++
Sbjct: 168 IPDTVGYSTPLEFGRLIRNIRNNVPNIDKADISVHCHNDLGLAVANSLAAVE 219
>sp|P58967|AKSA_METMA Putative homocitrate synthase AksA OS=Methanosarcina mazei (strain
ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM
88) GN=aksA PE=3 SV=1
Length = 405
Score = 44.7 bits (104), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 57/232 (24%), Positives = 101/232 (43%), Gaps = 18/232 (7%)
Query: 113 RDITNKFLKGIPRFVKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVS 172
R+ F+ P ++I +V RDG Q K+ + L S G+ V+EA V
Sbjct: 9 RNTLMDFIDYRPLDIEICDVTLRDGEQTPGVVFSKEQKLAVASELDSMGIEVIEAGFPVV 68
Query: 173 PKWVPQLADARDVMEAVRDLEG--ARLPVLTPNLKG-FEAAIAAGAKEVAIFASASEAFS 229
AD +++++ + + +G +R+ L+ +KG +AA+ V+IF + S+
Sbjct: 69 S------ADEKEIVKEIAN-QGFNSRICCLSRAVKGDVDAALECDVDIVSIFIAMSDMHL 121
Query: 230 KSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDM 289
K + S+ED L + A + VR PVE ++ KE+ +
Sbjct: 122 KYKYHRSLEDMLGCAKEAIEYATDHGLKVRFAAEDASRTPVE------RLKQAFKEVENE 175
Query: 290 GCFE-ISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNIL 340
+ +SL DT+G+ P T ++ + V + +H HD G + N L
Sbjct: 176 YKVQYVSLADTVGILNPTTTNYLVSEIFKSVNT-AICIHCHDDLGMATANTL 226
>sp|A8AB61|LEU1_IGNH4 Probable 2-isopropylmalate synthase OS=Ignicoccus hospitalis
(strain KIN4/I / DSM 18386 / JCM 14125) GN=leuA PE=3
SV=1
Length = 399
Score = 44.3 bits (103), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 48/239 (20%), Positives = 97/239 (40%), Gaps = 26/239 (10%)
Query: 120 LKGIPRFVKIVEVGPRDGLQNEKNTVPTGVKVELIRRL-------VSSGLPVVEATSFVS 172
L+ +P+ V+I + RDG Q + K+ + R+L + +G P V F +
Sbjct: 13 LENLPKEVRIFDTTLRDGEQTPGISFTKEQKLMIARQLAKLGVASIEAGFPAVSQGEFEA 72
Query: 173 PKWVPQLADARDVMEAVRDLEGARLPVLTPNLKGFEAAIAAGAKEVAIFASASEAFSKSN 232
K + + +++ R N + + A+ A + +F +AS+ K
Sbjct: 73 VKAIAREGLGPEIVALAR-----------ANKRDIDKALDADVDAIHVFIAASDIHLKYK 121
Query: 233 INCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKE-LHDMGC 291
+ + E++L R AK + V P +G Y E + D G
Sbjct: 122 LRMTREEALRRAVEAVEYAKSHGVTVEF-------SPEDGTRADLNYLYTMVEAVVDAGA 174
Query: 292 FEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQVSPMHA 350
+ + DT+GV TP + +++ ++ ++VH H+ +G ++ N + ++ A
Sbjct: 175 DRVDIPDTVGVMTPTRMKYLIKFILPAAKGRIVSVHCHNDFGLAVANSIAGIEAGARQA 233
>sp|Q7MP77|LEU1_VIBVY 2-isopropylmalate synthase OS=Vibrio vulnificus (strain YJ016)
GN=leuA PE=3 SV=1
Length = 515
Score = 44.3 bits (103), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 56/228 (24%), Positives = 97/228 (42%), Gaps = 23/228 (10%)
Query: 127 VKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVM 186
V I + RDG Q ++ K+++ L G+ V+EA VS D V
Sbjct: 5 VIIFDTTLRDGEQALSASLTVKEKLQIAYALERLGVDVIEAGFPVSSP-----GDFESVQ 59
Query: 187 EAVRDLEGARLPVLTPNLK-----GFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSL 241
R+++ +R+ L+ ++ EA A A + F S S + + S +D +
Sbjct: 60 TIARNIKNSRVCALSRAVEKDIDAAAEALKVAEAFRIHTFISTSTIHVQDKLRRSYDDVV 119
Query: 242 -VRYRAVAHAAKVLSIPVRGYVSCV-VGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDT 299
+ RAV HA R Y V C G P + + + + G I++ DT
Sbjct: 120 EMGVRAVKHA--------RKYTDDVEFSCEDAGRTPIDNLCRMVEAAINAGARTINIPDT 171
Query: 300 IGVGTPGTVVPMLEAVMAVVP-VEK--LAVHLHDTYGQSLPNILISLQ 344
+G P +++ + VP ++K ++VH HD G S+ N + ++Q
Sbjct: 172 VGYTVPSEFGGIIQTLFNRVPNIDKAIISVHCHDDLGMSVANSIAAVQ 219
>sp|Q8DEE1|LEU1_VIBVU 2-isopropylmalate synthase OS=Vibrio vulnificus (strain CMCP6)
GN=leuA PE=3 SV=1
Length = 515
Score = 44.3 bits (103), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 56/228 (24%), Positives = 97/228 (42%), Gaps = 23/228 (10%)
Query: 127 VKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVM 186
V I + RDG Q ++ K+++ L G+ V+EA VS D V
Sbjct: 5 VIIFDTTLRDGEQALSASLTVKEKLQIAYALERLGVDVIEAGFPVSSP-----GDFESVQ 59
Query: 187 EAVRDLEGARLPVLTPNLK-----GFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSL 241
R+++ +R+ L+ ++ EA A A + F S S + + S +D +
Sbjct: 60 TIARNIKNSRVCALSRAVEKDIDAAAEALKVAEAFRIHTFISTSTIHVQDKLRRSYDDVV 119
Query: 242 -VRYRAVAHAAKVLSIPVRGYVSCV-VGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDT 299
+ RAV HA R Y V C G P + + + + G I++ DT
Sbjct: 120 EMGVRAVKHA--------RKYTDDVEFSCEDAGRTPIDNLCRMVEAAINAGARTINIPDT 171
Query: 300 IGVGTPGTVVPMLEAVMAVVP-VEK--LAVHLHDTYGQSLPNILISLQ 344
+G P +++ + VP ++K ++VH HD G S+ N + ++Q
Sbjct: 172 VGYTVPSEFGGIIQTLFNRVPNIDKAIISVHCHDDLGMSVANSIAAVQ 219
>sp|Q8TKQ6|AKSA_METAC Putative homocitrate synthase AksA OS=Methanosarcina acetivorans
(strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A) GN=aksA
PE=3 SV=1
Length = 405
Score = 43.9 bits (102), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 54/230 (23%), Positives = 96/230 (41%), Gaps = 14/230 (6%)
Query: 113 RDITNKFLKGIPRFVKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVS 172
R+ F++ P ++I +V RDG Q K+ + L S G+ V+EA V
Sbjct: 9 RNTLMDFIEYRPLDIEICDVTLRDGEQTPGVVFTKEQKLAVASELDSMGIEVIEAGFPVV 68
Query: 173 PKWVPQLADARDVMEAVRDLEGARLPVLTPNLKG-FEAAIAAGAKEVAIFASASEAFSKS 231
+ ++ V E +R+ L+ +KG +AA+ V+IF + S+ K
Sbjct: 69 SAYEKEI-----VKEIANQGYDSRICCLSRAVKGDVDAALDCDVDIVSIFIAMSDMHLKY 123
Query: 232 NINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGC 291
+ ++ED L + A + VR P++ ++ KE+ +
Sbjct: 124 KYHRTLEDMLGCAKEAIEYATDHGLNVRFAAEDASRTPID------RLKQAFKEVENEYK 177
Query: 292 FE-ISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNIL 340
+ +SL DTIG+ P T ++ + V + +H HD G + N L
Sbjct: 178 VQYVSLADTIGILNPTTTHYLVSEIFKCVNT-SICIHCHDDLGMATANTL 226
>sp|Q5E856|LEU1_VIBF1 2-isopropylmalate synthase OS=Vibrio fischeri (strain ATCC 700601 /
ES114) GN=leuA PE=3 SV=1
Length = 515
Score = 43.1 bits (100), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 59/234 (25%), Positives = 101/234 (43%), Gaps = 35/234 (14%)
Query: 127 VKIVEVGPRDGLQNEKNTVPTGVKVEL---IRRL----VSSGLPVVEATSFVSPKWVPQ- 178
V I + RDG Q ++ K+++ + RL + +G PV F S K + Q
Sbjct: 5 VIIFDTTLRDGEQALSASLTVKEKLQIAYALERLGVDVIEAGFPVSSPGDFESVKTIAQH 64
Query: 179 LADAR--DVMEAV-RDLEGARLPVLTPNLKGFEAAIAAGAKEVAIFASASEAFSKSNINC 235
+ ++R + AV +D++ A EA A A + F S S + +
Sbjct: 65 IKNSRICGLSRAVAKDIDAAA-----------EALKVAEAFRIHTFISTSTVHVQDKLRR 113
Query: 236 SIEDSL-VRYRAVAHAAKVLSIPVRGYVSCV-VGCPVEGAIPPSKVAYVAKELHDMGCFE 293
S +D + + +AV HA R Y V C G P + + + D G
Sbjct: 114 SYDDVVEMGVKAVKHA--------RKYTDDVEFSCEDAGRTPIDNLCRMVEAAIDAGANT 165
Query: 294 ISLGDTIGVGTPGTVVPMLEAVMAVVP-VEK--LAVHLHDTYGQSLPNILISLQ 344
I++ DT+G PG +++ + VP ++K ++VH HD G S+ N + ++Q
Sbjct: 166 INIPDTVGYTVPGEFGGIVQTLFNRVPNIDKAIISVHCHDDLGMSVANSIAAVQ 219
>sp|Q8TYB1|LEU1_METKA Probable 2-isopropylmalate synthase OS=Methanopyrus kandleri
(strain AV19 / DSM 6324 / JCM 9639 / NBRC 100938)
GN=leuA PE=3 SV=1
Length = 499
Score = 42.7 bits (99), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 60/232 (25%), Positives = 101/232 (43%), Gaps = 31/232 (13%)
Query: 123 IPRFVKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADA 182
+P V+I + RDG Q ++ KVE+ R+L G+ +EA V+ +
Sbjct: 1 MPDRVRIFDTTLRDGEQTPGVSLTVEEKVEIARKLDEFGVDTIEAGFPVASEG------- 53
Query: 183 RDVMEAVRDLEGARLPV----LTPNLKG-FEAAIAAGAKEVAIFASASEAFSKSNINCSI 237
EAVR + G L L +KG +AAI A V +F + S+ + + S
Sbjct: 54 --EFEAVRAIAGEELDAEICGLARCVKGDIDAAIDADVDCVHVFIATSDIHLRYKLEMSR 111
Query: 238 EDSLVRYRAVAHAAKVLSIPVRGYVS---CVVGCPVEGAIPPSK--VAYVAKELHDMGCF 292
E++L R +I Y S V E A + + V K + G
Sbjct: 112 EEALER-----------AIEGVEYASDHGVTVEFSAEDATRTDRDYLLEVYKATVEAGAD 160
Query: 293 EISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQ 344
+++ DT+GV TP + + V+ V V ++VH H+ +G ++ N L +++
Sbjct: 161 RVNVPDTVGVMTPPEMYRLTAEVVDAVDV-PVSVHCHNDFGMAVANSLAAVE 211
>sp|C3LR32|LEU1_VIBCM 2-isopropylmalate synthase OS=Vibrio cholerae serotype O1 (strain
M66-2) GN=leuA PE=3 SV=1
Length = 516
Score = 40.8 bits (94), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 53/228 (23%), Positives = 96/228 (42%), Gaps = 23/228 (10%)
Query: 127 VKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVM 186
V I + RDG Q ++ K+++ L G+ ++EA VS D V
Sbjct: 5 VIIFDTTLRDGEQALSASLTVKEKLQIAYALERLGVDIIEAGFPVSSP-----GDFESVQ 59
Query: 187 EAVRDLEGARLPVLTPNLK-----GFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSL 241
++++ +R+ L+ + EA A A + F S S + + S +D +
Sbjct: 60 TIAKNIKNSRVCALSRAVAKDIDAAAEALKVAEAFRIHTFISTSTIHVQDKLRRSYDDVV 119
Query: 242 -VRYRAVAHAAKVLSIPVRGYVSCV-VGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDT 299
+ +AV HA R Y V C G P + + + + G I++ DT
Sbjct: 120 AMAVKAVKHA--------RQYTDDVEFSCEDAGRTPIDNLCRMVEAAINAGARTINIPDT 171
Query: 300 IGVGTPGTVVPMLEAVMAVVP-VEK--LAVHLHDTYGQSLPNILISLQ 344
+G P +++ + VP ++K ++VH HD G S+ N + ++Q
Sbjct: 172 VGYTVPSEFGGIIQTLFNRVPNIDKAIISVHCHDDLGMSVANSIAAIQ 219
>sp|Q9KP83|LEU1_VIBCH 2-isopropylmalate synthase OS=Vibrio cholerae serotype O1 (strain
ATCC 39315 / El Tor Inaba N16961) GN=leuA PE=3 SV=1
Length = 516
Score = 40.8 bits (94), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 53/228 (23%), Positives = 96/228 (42%), Gaps = 23/228 (10%)
Query: 127 VKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVM 186
V I + RDG Q ++ K+++ L G+ ++EA VS D V
Sbjct: 5 VIIFDTTLRDGEQALSASLTVKEKLQIAYALERLGVDIIEAGFPVSSP-----GDFESVQ 59
Query: 187 EAVRDLEGARLPVLTPNLK-----GFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSL 241
++++ +R+ L+ + EA A A + F S S + + S +D +
Sbjct: 60 TIAKNIKNSRVCALSRAVAKDIDAAAEALKVAEAFRIHTFISTSTIHVQDKLRRSYDDVV 119
Query: 242 -VRYRAVAHAAKVLSIPVRGYVSCV-VGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDT 299
+ +AV HA R Y V C G P + + + + G I++ DT
Sbjct: 120 AMAVKAVKHA--------RQYTDDVEFSCEDAGRTPIDNLCRMVEAAINAGARTINIPDT 171
Query: 300 IGVGTPGTVVPMLEAVMAVVP-VEK--LAVHLHDTYGQSLPNILISLQ 344
+G P +++ + VP ++K ++VH HD G S+ N + ++Q
Sbjct: 172 VGYTVPSEFGGIIQTLFNRVPNIDKAIISVHCHDDLGMSVANSIAAIQ 219
>sp|C0Z9C8|LEU1_BREBN 2-isopropylmalate synthase OS=Brevibacillus brevis (strain 47 / JCM
6285 / NBRC 100599) GN=leuA PE=3 SV=1
Length = 512
Score = 40.8 bits (94), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 56/231 (24%), Positives = 100/231 (43%), Gaps = 25/231 (10%)
Query: 125 RFVKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEAT-SFVSPKWVPQLADAR 183
R ++I + RDG Q+ + T KVE+ +L G+ +EA + SP D +
Sbjct: 2 RTIEIFDTTLRDGEQSPGVNISTNEKVEIALQLEKLGVNRMEAGFAAASP------GDQK 55
Query: 184 DVMEAVRDLEGARLPVLTPNL-----KGFEAAIAAGAKEVAIFASASEAFSKSNINCSIE 238
V E + ++ A + L + K +EA A + +F + S + +N S E
Sbjct: 56 SVAEVAKRVKNATVVSLARAVKDDMDKAYEALRNAQNASLHVFLATSPIHRQFKLNMSKE 115
Query: 239 DSLVR-YRAVAHAAKVLSIPVRGYVSCVVGCPVEGA-IPPSKVAYVAKELHDMGCFEISL 296
+ L R AV +A K Y + V + A +A V + + G +++
Sbjct: 116 EVLARAVEAVTYAKK--------YFTEVQFSAEDAARTEIDFLAEVVEAVIKAGATTVNI 167
Query: 297 GDTIGVGTP---GTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQ 344
DT+G TP G + L+ + + +L+ H HD G ++ N L +++
Sbjct: 168 PDTVGYMTPYQYGNIFRELKKRVPSTDLIRLSCHCHDDLGMAVANSLAAVE 218
>sp|B5FGH4|LEU1_VIBFM 2-isopropylmalate synthase OS=Vibrio fischeri (strain MJ11) GN=leuA
PE=3 SV=1
Length = 515
Score = 40.8 bits (94), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 55/228 (24%), Positives = 96/228 (42%), Gaps = 23/228 (10%)
Query: 127 VKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVM 186
V I + RDG Q ++ K+++ L G+ V+EA VS D V
Sbjct: 5 VIIFDTTLRDGEQALSASLTVKEKLQIAYALERLGVDVIEAGFPVSSP-----GDFESVR 59
Query: 187 EAVRDLEGARLPVLTPNLK-----GFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSL 241
+ ++ +R+ L+ + EA A A + F S S + + S +D +
Sbjct: 60 TIAQHIKNSRICGLSRAVAKDIDAAAEALKVAEAFRIHTFISTSTVHVQDKLRRSYDDVV 119
Query: 242 -VRYRAVAHAAKVLSIPVRGYVSCV-VGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDT 299
+ +AV HA R Y V C G P + + + + G I++ DT
Sbjct: 120 EMGVKAVKHA--------RKYTDDVEFSCEDAGRTPIDNLCRMVEAAINAGANTINIPDT 171
Query: 300 IGVGTPGTVVPMLEAVMAVVP-VEK--LAVHLHDTYGQSLPNILISLQ 344
+G PG +++ + VP ++K ++VH HD G S+ N + ++Q
Sbjct: 172 VGYTVPGEFGGIVQTLFNRVPNIDKAIISVHCHDDLGMSVANSIAAVQ 219
>sp|Q8ZW35|LEU1_PYRAE Probable 2-isopropylmalate synthase OS=Pyrobaculum aerophilum
(strain ATCC 51768 / IM2 / DSM 7523 / JCM 9630 / NBRC
100827) GN=leuA PE=3 SV=1
Length = 364
Score = 40.4 bits (93), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 32/137 (23%), Positives = 61/137 (44%), Gaps = 6/137 (4%)
Query: 208 EAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVG 267
+AA A + +F + S+ K + + E++L R V AK + +
Sbjct: 65 DAAAEADVDMIHLFIATSDIHLKYKLGITREEALRRIEEVVSYAKSYGVEILFSAEDATR 124
Query: 268 CPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVH 327
+E K A A G EI++ DT+GV TP + +++ + +P + VH
Sbjct: 125 SDLEFLAKAYKTAIEA------GADEINVPDTVGVMTPSRMAYLIKYLRERLPPIPMHVH 178
Query: 328 LHDTYGQSLPNILISLQ 344
HD +G ++ N + +++
Sbjct: 179 CHDDFGMAVANTVTAIE 195
>sp|Q9FG67|MAM1_ARATH Methylthioalkylmalate synthase 1, chloroplastic OS=Arabidopsis
thaliana GN=MAM1 PE=1 SV=1
Length = 506
Score = 40.0 bits (92), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 57/270 (21%), Positives = 111/270 (41%), Gaps = 29/270 (10%)
Query: 91 RNHKMFGSACDIYNSNC--NDKDIRDITNKFLKGIPR------FVKIVEVGPRDGLQNEK 142
+N +F S C + N + D++ + ++ + IP +V++ + RDG Q+
Sbjct: 41 KNPALFISCCSSVSKNAATSSTDLKPVVERWPEYIPNKLPDGNYVRVFDTTLRDGEQSPG 100
Query: 143 NTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVR---DLEGARLPV 199
++ K+E+ R+L + ++E S + +L + + + V D E +PV
Sbjct: 101 GSLTPPQKLEIARQLAKLRVDIMEVGFPGSSE--EELETIKTIAKTVGNEVDEETGYVPV 158
Query: 200 LTPNLK--------GFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAA 251
+ + +EA A + +F S S+ K + + E+ + + A
Sbjct: 159 ICAIARCKHRDIEATWEALKYAKRPRILVFTSTSDIHMKYKLKKTQEEVIEMAVSSIRFA 218
Query: 252 KVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGVGTP---GTV 308
K L G+ GC G + + E G +++GDT+G+ P G +
Sbjct: 219 KSL-----GFNDIQFGCEDGGRSDKDFLCKILGEAIKAGVTVVTIGDTVGINMPHEYGEL 273
Query: 309 VPMLEAVMAVVPVEKLAVHLHDTYGQSLPN 338
V L+A + +AVH H+ G + N
Sbjct: 274 VTYLKANTPGIDDVVVAVHCHNDLGLATAN 303
>sp|Q87SS7|LEU1_VIBPA 2-isopropylmalate synthase OS=Vibrio parahaemolyticus serotype
O3:K6 (strain RIMD 2210633) GN=leuA PE=3 SV=1
Length = 515
Score = 40.0 bits (92), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 53/228 (23%), Positives = 93/228 (40%), Gaps = 23/228 (10%)
Query: 127 VKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVM 186
V I + RDG Q ++ K+++ L G+ V+EA +S D V
Sbjct: 5 VIIFDTTLRDGEQALSASLTVKEKLQIAYALERLGVDVIEAGFPISSP-----GDFESVQ 59
Query: 187 EAVRDLEGARLPVLTPNLK-----GFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSL 241
+ ++ +R+ L+ + EA A + F + S + + S +D L
Sbjct: 60 TIAKHIKNSRVCALSRAVAKDIDAAAEALKVADQFRIHTFLATSTIHVQDKLRRSYDDVL 119
Query: 242 -VRYRAVAHAAKVLSIPVRGYVSCV-VGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDT 299
+ AV HA R Y V C G P + + + D G I++ DT
Sbjct: 120 EMAVNAVKHA--------RNYTDDVEFSCEDAGRTPIDNLCRMVEAAIDAGASTINIPDT 171
Query: 300 IGVGTPGTVVPMLEAVMAVVP-VEK--LAVHLHDTYGQSLPNILISLQ 344
+G P +++ + VP ++K ++VH HD G S+ N + ++Q
Sbjct: 172 VGYTVPSEFGGIIQTLFNRVPNIDKAIISVHCHDDLGMSVANSIAAVQ 219
>sp|A4SR62|LEU1_AERS4 2-isopropylmalate synthase OS=Aeromonas salmonicida (strain A449)
GN=leuA PE=3 SV=1
Length = 524
Score = 39.7 bits (91), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 55/229 (24%), Positives = 95/229 (41%), Gaps = 23/229 (10%)
Query: 127 VKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVM 186
V I + RDG Q ++ K+++ + L G+ ++E VS D + V
Sbjct: 5 VIIFDTTLRDGEQALAASLTVKEKLQIAQALERLGVDIMEVGFPVSSP-----GDFQSVQ 59
Query: 187 EAVRDLEGARLPVLTPNL-----KGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSL 241
R ++ +R+ L L EA A A + F S S +S + S ED L
Sbjct: 60 TIARHIKNSRVCALARALPQDIDAAGEALRVAEAFRIHTFISTSSIHVESKLKKSFEDVL 119
Query: 242 -VRYRAVAHAAKVLSIPVRGYVSCV-VGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDT 299
+ A+ HA + Y V C G P + + + G I++ DT
Sbjct: 120 EMGVSAIKHALR--------YTDDVEFSCEDAGRTPIDNLCRMVEAAIKAGARTINIPDT 171
Query: 300 IGVGTPGTVVPMLEAVMAVVP-VEK--LAVHLHDTYGQSLPNILISLQV 345
+G P +++ + VP ++K ++VH HD G S+ N + ++Q+
Sbjct: 172 VGYTVPTEFSGIIQTLFNRVPNIDKAIISVHCHDDLGLSVANSIGAVQM 220
>sp|A7Z7B8|LEU1_BACA2 2-isopropylmalate synthase OS=Bacillus amyloliquefaciens (strain
FZB42) GN=leuA PE=3 SV=1
Length = 518
Score = 39.3 bits (90), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 53/229 (23%), Positives = 102/229 (44%), Gaps = 21/229 (9%)
Query: 125 RFVKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARD 184
R + + + RDG Q+ + + K+ + ++L G+ ++EA S + D
Sbjct: 2 RKINVFDTTLRDGEQSPGVNLNSREKLAIAKQLERLGVDIIEAGFPASSR-----GDFLA 56
Query: 185 VMEAVRDLEGARLPVLTPNLKG-----FEAAIAAGAKEVAIFASASEAFSKSNINCSIED 239
V E R ++ + L ++KG +EA + + IF + S+ K + + E+
Sbjct: 57 VQEIARTIKNCSVTGLARSVKGDIDAAWEALKDGVSPRIHIFIATSDIHLKHKLKMTREE 116
Query: 240 SLVRYRAVAHAAKVLS-IPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGD 298
V+ +AV P+ + S C E +P +A + +E+ D G I+L D
Sbjct: 117 --VKEKAVEMVKYAKERFPIVQW-SAEDACRTE--LPF--LAEIVEEVIDAGASVINLPD 169
Query: 299 TIGVGTP---GTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQ 344
T+G TP G + ++ + + KL+ H HD G ++ N L +++
Sbjct: 170 TVGYLTPDEYGNIFKYMKEHVPNISRVKLSAHCHDDLGMAVANSLSAIE 218
>sp|A0KGM9|LEU1_AERHH 2-isopropylmalate synthase OS=Aeromonas hydrophila subsp.
hydrophila (strain ATCC 7966 / NCIB 9240) GN=leuA PE=3
SV=1
Length = 524
Score = 39.3 bits (90), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 56/229 (24%), Positives = 95/229 (41%), Gaps = 23/229 (10%)
Query: 127 VKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVM 186
V I + RDG Q ++ K+++ + L G+ V+E VS D + V
Sbjct: 5 VIIFDTTLRDGEQALAASLTVKEKLQIAQALERLGVDVMEVGFPVSSP-----GDFQSVQ 59
Query: 187 EAVRDLEGARLPVLTPNL-----KGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSL 241
R ++ +R+ L L EA A A + F S S +S + S ED L
Sbjct: 60 TIARHIKQSRVCALARALPKDIDAAGEALRVAEAFRIHTFISTSSIHVESKLKKSFEDVL 119
Query: 242 -VRYRAVAHAAKVLSIPVRGYVSCV-VGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDT 299
+ A+ HA R Y V C G P + + + G I++ DT
Sbjct: 120 EMGVSAIKHA--------RRYTDDVEFSCEDAGRTPIDNLCRMVEAAIKAGARTINIPDT 171
Query: 300 IGVGTPGTVVPMLEAVMAVVP-VEK--LAVHLHDTYGQSLPNILISLQV 345
+G P +++ + VP +++ ++VH HD G S+ N + ++Q+
Sbjct: 172 VGYTVPTEFSGIIQTLFNRVPNIDQAIISVHCHDDLGLSVANSIGAVQM 220
>sp|Q9Y823|HOSM_SCHPO Homocitrate synthase, mitochondrial OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=lys4 PE=1 SV=1
Length = 418
Score = 39.3 bits (90), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 51/236 (21%), Positives = 94/236 (39%), Gaps = 22/236 (9%)
Query: 119 FLKGIPRFVKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQ 178
FL + F I+E R+G Q T K+++ + L + G+ +E TS V+ +
Sbjct: 28 FLSRVNNF-SIIESTLREGEQFANAFFDTEKKIQIAKALDNFGVDYIELTSPVASEQ--- 83
Query: 179 LADARDVMEAVRDLEGARLPVLTP---NLKGFEAAIAAGAKEVAIFASASEAFSKSNINC 235
+R EA+ L G + +LT ++ A+ G V + S+ K +
Sbjct: 84 ---SRQDCEAICKL-GLKCKILTHIRCHMDDARVAVETGVDGVDVVIGTSQYLRKYSHGK 139
Query: 236 SIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVA--KELHDMGCFE 293
+ + V + K I VR E + V ++ K + +G
Sbjct: 140 DMTYIIDSATEVINFVKSKGIEVR--------FSSEDSFRSDLVDLLSLYKAVDKIGVNR 191
Query: 294 ISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQVSPMH 349
+ + DT+G TP V ++ + VV + + H H+ G ++ N +L+ H
Sbjct: 192 VGIADTVGCATPRQVYDLIRTLRGVVSCD-IECHFHNDTGMAIANAYCALEAGATH 246
>sp|O04973|LEU1A_SOLPN 2-isopropylmalate synthase A OS=Solanum pennellii GN=IPMSA PE=2
SV=1
Length = 589
Score = 39.3 bits (90), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 54/243 (22%), Positives = 97/243 (39%), Gaps = 46/243 (18%)
Query: 124 PRFVKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEA-------TSFVSPKWV 176
P++V+I + RDG Q+ T+ T K+++ R+L G+ ++EA F S K +
Sbjct: 45 PKYVRIFDTTLRDGEQSPGATMTTKEKLDVARQLAKLGVDIIEAGFPASSEADFESVKLI 104
Query: 177 P-QLADARDVMEAVRDLEGARLPVL--------TPNLKGFEAAIAAGAKEVAIFASASEA 227
++ + D E +PV+ + K +EA A V F + SE
Sbjct: 105 AEEIGNNTD--------ENGFVPVICGLSRCNKSDIDKAWEAVKYAKKPRVHTFIATSEI 156
Query: 228 FSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGC------PVEGAIPPSKVAY 281
K + S E + + R++ A+ L GC P + + Y
Sbjct: 157 HMKYKLKMSREQVVEKARSMVAYARSL------------GCEDVEFSPEDAGRSDREFLY 204
Query: 282 -VAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVP-VEK--LAVHLHDTYGQSLP 337
+ E+ G +++ DT+G P ++ + A P +E ++ H + G S
Sbjct: 205 DILGEVIKAGATTLNIPDTVGYTVPSEFGQLITDIKANTPGIENVIISTHCQNDLGLSTA 264
Query: 338 NIL 340
N L
Sbjct: 265 NTL 267
>sp|B6ELK0|LEU1_ALISL 2-isopropylmalate synthase OS=Aliivibrio salmonicida (strain
LFI1238) GN=leuA PE=3 SV=1
Length = 515
Score = 38.5 bits (88), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 53/223 (23%), Positives = 95/223 (42%), Gaps = 13/223 (5%)
Query: 127 VKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVM 186
V I + RDG Q ++ K+++ L G+ V+EA +S D V
Sbjct: 5 VIIFDTTLRDGEQALSASLTVKEKLQIAFALERLGVDVIEAGFPISSP-----GDFESVR 59
Query: 187 EAVRDLEGARLPVLTPNLKGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVR-YR 245
+ ++ +R+ L+ + + +AA A +VA S S ++ ++D L R Y
Sbjct: 60 TIAKHIKNSRICALSRAVTK-DIDVAADALKVAEAFRIHTFISTSTVH--VQDKLRRSYD 116
Query: 246 AVAHAAKVLSIPVRGYVSCV-VGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGVGT 304
V R Y V C G P + + + + G I++ DT+G
Sbjct: 117 DVVEMGVKAVQRARKYTDDVEFSCEDAGRTPIDNLCRMVEAAINAGANTINIPDTVGYTI 176
Query: 305 PGTVVPMLEAVMAVVP-VEK--LAVHLHDTYGQSLPNILISLQ 344
PG +++ + VP ++K ++VH HD G S+ N + ++Q
Sbjct: 177 PGEFGGIIQTLFNRVPNIDKAIISVHCHDDLGMSVANSIAAVQ 219
>sp|Q8DJ32|LEU1_THEEB 2-isopropylmalate synthase OS=Thermosynechococcus elongatus (strain
BP-1) GN=leuA PE=3 SV=1
Length = 535
Score = 38.1 bits (87), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 54/222 (24%), Positives = 99/222 (44%), Gaps = 16/222 (7%)
Query: 127 VKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEAT-SFVSPKWVPQLADARDV 185
V I + RDG Q+ ++ K+ + R+L G+ ++EA F SP + +
Sbjct: 13 VLIFDTTLRDGEQSPGASLNVDEKLTIARQLARLGVDIIEAGFPFASPG---DFEAVQRI 69
Query: 186 MEAVRDLEGARLPVLTPNLKGFEAAIAAGAKEV--AIFASASEAFSKSNINCSIEDSLVR 243
E V G PV+ + I A AK + A + + S+I+ +E L +
Sbjct: 70 AETVGTETG---PVICGLARATRQDIEAAAKALKPAYYPRIHTFIATSDIH--LEYKLRK 124
Query: 244 YRA-VAHAAKVLSIPVRGYVSCVVGCPVE-GAIPPSKVAYVAKELHDMGCFEISLGDTIG 301
RA V A+ + + +V V P + G P + V + + D G +++ DT+G
Sbjct: 125 TRAEVLEIAQEMVAYAKSFVDDVEFSPEDAGRSDPEFLYEVLERVIDAGATTVNIPDTVG 184
Query: 302 VGTPGTVVPMLEAVMAVVP-VEK--LAVHLHDTYGQSLPNIL 340
TP +++ + VP +++ ++VH H+ G ++ N L
Sbjct: 185 YTTPAEFGALIKGIKENVPNIDRAVISVHGHNDLGLAVANFL 226
>sp|C4XPA8|LEU1_DESMR 2-isopropylmalate synthase OS=Desulfovibrio magneticus (strain ATCC
700980 / DSM 13731 / RS-1) GN=leuA PE=3 SV=1
Length = 513
Score = 38.1 bits (87), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 55/231 (23%), Positives = 97/231 (41%), Gaps = 15/231 (6%)
Query: 127 VKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVM 186
V I + RDG Q+ T+ KV + R+L + G+ ++EA + + Q A +
Sbjct: 7 VYIFDTTLRDGEQSPGATMTREEKVRMARQLETLGVDIIEAGFPAASEGDFQAVSA--IA 64
Query: 187 EAVRD-LEGARLPVLTPNL-KGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSL-VR 243
AV+ + A L ++ +GFEA A + + F + SE + +N + L +
Sbjct: 65 AAVKTPVVAALCRALASDIDRGFEAIKGAQRRRIHTFLATSELHMQHKLNKTPTQVLDMI 124
Query: 244 YRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGVG 303
AV+HAA +G + P VA + + + G +++ DT+G
Sbjct: 125 EAAVSHAAS------KGVEVQFSAEDASRSEPAFLVAACERAI-NAGATILNIPDTVGYA 177
Query: 304 TPGTVVPMLEAVMAVVPVE---KLAVHLHDTYGQSLPNILISLQVSPMHAK 351
P ++ +M V AVH H+ G ++ N L +L A+
Sbjct: 178 QPAEFAELIRHLMTTVRGAGGVTFAVHCHNDLGLAVANTLAALHAGARQAE 228
>sp|A3DF94|LEU1_CLOTH 2-isopropylmalate synthase OS=Clostridium thermocellum (strain ATCC
27405 / DSM 1237) GN=leuA PE=3 SV=1
Length = 511
Score = 38.1 bits (87), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 54/235 (22%), Positives = 96/235 (40%), Gaps = 37/235 (15%)
Query: 125 RFVKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVE-ATSFVSPKWVPQLADAR 183
R ++I + RDG Q + KV++ ++L G+ V+E SP D
Sbjct: 2 RRIRIFDTTLRDGEQTPGVNLNIQEKVDIAKQLARLGVDVIEPGFPLTSP------GDFE 55
Query: 184 DVMEAVRDLEGARLPVLTPNLKGFEAAIA------------AGAKEVAIFASASEAFSKS 231
V R++EG P + GF AI A K IF S+S+ K
Sbjct: 56 AVQRIAREVEG-------PYICGFSRAIIRDIDETWKAIKDAQKKCFHIFISSSDIQIKH 108
Query: 232 NINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAY-VAKELHDMG 290
+ + +D L ++ + AK Y V P++ + + Y V + D G
Sbjct: 109 QLGKTEKDVLEIVKSTVYHAK-------QYTDEVEYSPMDASRTRLEFLYEVIEAAIDNG 161
Query: 291 CFEISLGDTIGVGTP---GTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILIS 342
I++ DT+G TP G ++ + + + ++VH H+ G ++ N +++
Sbjct: 162 ATVINIPDTVGYATPIEFGELIQKIRKNVRNIDKAIISVHCHNDLGMAVANSIVA 216
>sp|Q7NI93|LEU1_GLOVI 2-isopropylmalate synthase OS=Gloeobacter violaceus (strain PCC
7421) GN=leuA PE=3 SV=1
Length = 538
Score = 37.7 bits (86), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 55/223 (24%), Positives = 101/223 (45%), Gaps = 14/223 (6%)
Query: 129 IVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEAT-SFVSPKWVPQLADARDVME 187
I + RDG Q+ T+ KVE+ R+L G+ V+EA ++ SP D V
Sbjct: 8 IFDTTLRDGEQSPGATLNADEKVEIARQLARLGVDVIEAGFAYASP------GDFEAVER 61
Query: 188 AVRDLEGARLPVLTPNLKGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRA- 246
R + PV+ + + I A A+ + A S + +E L + RA
Sbjct: 62 VARTVGTEDGPVICSLARAIRSDIQAAAEAIRPAARGRIHTFISTSDIHLEHQLRKSRAE 121
Query: 247 -VAHAAKVLSIPVRGYVSCVVGCPVE-GAIPPSKVAYVAKELHDMGCFEISLGDTIGVGT 304
+A AA++++ +G+V V P++ G P + V + G +++ DT+G T
Sbjct: 122 VLAIAAEMVAF-AKGFVDDVEFSPMDAGRSAPEYLYRVLEAAIAAGATTVNIPDTVGYLT 180
Query: 305 PGTVVPMLEAVMA-VVPVEK--LAVHLHDTYGQSLPNILISLQ 344
P ++ + V +E+ ++VH H+ G ++ N L +++
Sbjct: 181 PAEFGGLIRGITQNVRGIERAVISVHCHNDLGLAVANSLAAIE 223
>sp|A1JJH7|LEU1_YERE8 2-isopropylmalate synthase OS=Yersinia enterocolitica serotype O:8
/ biotype 1B (strain 8081) GN=leuA PE=3 SV=1
Length = 520
Score = 37.7 bits (86), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 53/227 (23%), Positives = 93/227 (40%), Gaps = 21/227 (9%)
Query: 127 VKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVM 186
V I + RDG Q + ++ K+++ L G+ V+E VS D V
Sbjct: 5 VIIFDTTLRDGEQALQASLSVKEKLQIALALERMGVDVMEVGFPVSSP-----GDFESVR 59
Query: 187 EAVRDLEGARLPVLTPNLK-----GFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSL 241
+ ++ +R+ L + EA A A + +F + S +S + S +D L
Sbjct: 60 TIAQQMKNSRVCALARCVDKDIDVAAEALRIAEAFRIHVFLATSTLHIESKLKRSFDDVL 119
Query: 242 VRYRAVAHAAKVLSIPVRGYVSCV-VGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTI 300
H+ K R Y V C G P + + + + G I++ DT+
Sbjct: 120 A---MAVHSVK----RARNYTDDVEFSCEDAGRTPIDNLCRIVEAAINAGATTINIPDTV 172
Query: 301 GVGTPGTVVPMLEAVMAVVP-VEK--LAVHLHDTYGQSLPNILISLQ 344
G TP ++ + VP ++K ++VH HD G S+ N + ++Q
Sbjct: 173 GYTTPYQFGGIITDLYQRVPNIDKAIISVHCHDDLGMSVANSITAVQ 219
>sp|P94565|LEU1_BACSU 2-isopropylmalate synthase OS=Bacillus subtilis (strain 168)
GN=leuA PE=3 SV=1
Length = 518
Score = 37.4 bits (85), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 51/228 (22%), Positives = 96/228 (42%), Gaps = 19/228 (8%)
Query: 125 RFVKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARD 184
R + + RDG Q+ + T K+ + ++L G ++EA S + D
Sbjct: 2 RKINFFDTTLRDGEQSPGVNLNTQEKLAIAKQLERLGADIIEAGFPASSR-----GDFLA 56
Query: 185 VMEAVRDLEGARLPVLTPNLKG-----FEAAIAAGAKEVAIFASASEAFSKSNINCSIED 239
V E R ++ + L +KG +EA + +F + S+ K + + E
Sbjct: 57 VQEIARTIKNCSVTGLARCVKGDIDAAWEALKDGAQPRIHVFIATSDIHLKHKLKMTREQ 116
Query: 240 SLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDT 299
+ R + AK P+ + S C E +P +A + +++ D G I+L DT
Sbjct: 117 VIERAVGMVKYAKE-RFPIVQW-SAEDACRTE--LPF--LAEIVEKVIDAGASVINLPDT 170
Query: 300 IGVGTP---GTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQ 344
+G P G + ++ + + KL+ H HD G ++ N L +++
Sbjct: 171 VGYLAPAEYGNIFKYMKENVPNIHKAKLSAHCHDDLGMAVANSLAAIE 218
>sp|C3MPM7|HOSA_SULIL Putative homocitrate synthase OS=Sulfolobus islandicus (strain
L.S.2.15 / Lassen #1) GN=LS215_1332 PE=3 SV=1
Length = 461
Score = 37.4 bits (85), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 50/228 (21%), Positives = 90/228 (39%), Gaps = 26/228 (11%)
Query: 127 VKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATS-FVSPKWVPQLADARDV 185
V I++ R+G Q +VE+ + L G+ ++EA VSP D+
Sbjct: 4 VGILDSTLREGEQTPGVIFTVDQRVEIAKALSDLGVSMIEAGHPAVSP----------DI 53
Query: 186 MEAV-RDLEGARLPVLTPNLKG--------FEAAIAAGAKEVAIFASASEAFSKSNINCS 236
E + R ++ + ++T + G E A +AIF S+ K+ +
Sbjct: 54 YEGIKRIVKLKKEGIITSEIVGHSRAVKRDIEIAAELEVNRIAIFYGVSDLHLKAKHKAT 113
Query: 237 IEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISL 296
E++L AK + VR + + SK A D G +S+
Sbjct: 114 REEALRTIAETISYAKNHGVKVRFTAEDGSRTDFDFLVTVSKTA------RDAGADRVSI 167
Query: 297 GDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQ 344
DT+G+ P + A+ VP + +H H+ G ++ N L +++
Sbjct: 168 ADTVGILYPSKTKELFSALTREVPNLEFDIHAHNDLGLAVANALAAIE 215
>sp|B7VIF2|LEU1_VIBSL 2-isopropylmalate synthase OS=Vibrio splendidus (strain LGP32)
GN=leuA PE=3 SV=1
Length = 515
Score = 37.4 bits (85), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 51/228 (22%), Positives = 94/228 (41%), Gaps = 23/228 (10%)
Query: 127 VKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVM 186
V I + RDG Q ++ K+++ L G+ V+EA +S D V
Sbjct: 5 VIIFDTTLRDGEQALAASLTVKEKLQIAYALERLGVDVIEAGFPISSP-----GDFESVQ 59
Query: 187 EAVRDLEGARLPVLTPNLK-----GFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSL 241
+ ++ +R+ L+ + EA A + F S S + + S +D +
Sbjct: 60 TIAKHIKDSRICALSRAVAKDIDAAAEALKVADQFRIHTFISTSTVHVQDKLRRSYDDVV 119
Query: 242 -VRYRAVAHAAKVLSIPVRGYVSCV-VGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDT 299
+ +AV HA R Y V C G P + + + + G I++ DT
Sbjct: 120 EMAVKAVKHA--------RNYTDDVEFSCEDAGRTPIDNLCRMVEAAINAGAKTINIPDT 171
Query: 300 IGVGTPGTVVPMLEAVMAVVP-VEK--LAVHLHDTYGQSLPNILISLQ 344
+G P +++ + VP +++ ++VH HD G S+ N + ++Q
Sbjct: 172 VGYTVPNEFGGIIKTLFDRVPNIDQAIISVHCHDDLGMSVANSIAAVQ 219
>sp|A4J181|LEU1_DESRM 2-isopropylmalate synthase OS=Desulfotomaculum reducens (strain
MI-1) GN=leuA PE=3 SV=1
Length = 505
Score = 37.4 bits (85), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 57/230 (24%), Positives = 96/230 (41%), Gaps = 29/230 (12%)
Query: 127 VKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEAT-SFVSPKWVPQLADARDV 185
V I + RDG Q+ ++ K+++ R+L G+ ++EA SP D V
Sbjct: 5 VHIFDTTLRDGEQSPGVSLNLNEKLQIARQLARLGVDIIEAGFPITSP------GDFAAV 58
Query: 186 MEAVRDLEGARLPVLT-PNLK----GFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDS 240
R++ G + L N K ++A A + F + S+ K + E
Sbjct: 59 QAVAREVRGVTVAGLARANFKDIDVAWDAIKEAEQARIHTFIATSDIHLKYKLRKDREQV 118
Query: 241 L-VRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAY---VAKELHDMGCFEISL 296
+ AV HA R Y S V + + S + Y + +E+ G I++
Sbjct: 119 IEAAVAAVKHA--------RKYTSDVEFSAEDAS--RSDIDYLCRIFQEVIKAGATVINV 168
Query: 297 GDTIGVGTPGTVVPMLEAVMAVVP-VEK--LAVHLHDTYGQSLPNILISL 343
DT+G TPG + ++ P +EK L+VH HD G ++ N L ++
Sbjct: 169 PDTVGYTTPGEYAQFIRDILEKTPGMEKIVLSVHCHDDLGLAVANSLAAV 218
>sp|Q5T1M5|FKB15_HUMAN FK506-binding protein 15 OS=Homo sapiens GN=FKBP15 PE=1 SV=2
Length = 1219
Score = 37.4 bits (85), Expect = 0.19, Method: Composition-based stats.
Identities = 22/63 (34%), Positives = 32/63 (50%), Gaps = 7/63 (11%)
Query: 143 NTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPVLTP 202
NT P VK +LI R+ G P++ P PQL +E V L+G PV+TP
Sbjct: 354 NTSPDAVKAKLISRMAKMGQPML-------PILPPQLDSNDSEIEDVNTLQGGGQPVVTP 406
Query: 203 NLK 205
+++
Sbjct: 407 SVQ 409
>sp|A8G9R1|LEU1_SERP5 2-isopropylmalate synthase OS=Serratia proteamaculans (strain 568)
GN=leuA PE=3 SV=1
Length = 524
Score = 37.4 bits (85), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 54/228 (23%), Positives = 95/228 (41%), Gaps = 23/228 (10%)
Query: 127 VKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVM 186
V I + RDG Q + ++ K+++ L G+ V+E VS D V
Sbjct: 5 VIIFDTTLRDGEQALQASLSVKEKIQIAMALERMGVDVMEVGFPVSSP-----GDFESVQ 59
Query: 187 EAVRDLEGARLPVLTPNLK-----GFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSL 241
R ++ +R+ L + EA A A + +F + S +S + S ++ L
Sbjct: 60 TIARQIKNSRVCGLARCVDKDIDVAAEALRVAEAFRIHVFLATSTLHIESKLKRSFDEVL 119
Query: 242 -VRYRAVAHAAKVLSIPVRGYVSCV-VGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDT 299
+ R+V A R Y V C G P + V + + G I++ DT
Sbjct: 120 EMAIRSVKRA--------RNYTDDVEFSCEDAGRTPIDNLCRVVEAAINAGATTINIPDT 171
Query: 300 IGVGTPGTVVPMLEAVMAVVP-VEK--LAVHLHDTYGQSLPNILISLQ 344
+G TP ++ + VP ++K ++VH HD G ++ N + ++Q
Sbjct: 172 VGYTTPNQFGGIITTLYDRVPNIDKAIISVHCHDDLGMAVGNSIAAVQ 219
>sp|C3NDV7|HOSA_SULIY Putative homocitrate synthase OS=Sulfolobus islandicus (strain
Y.G.57.14 / Yellowstone #1) GN=YG5714_1230 PE=3 SV=1
Length = 461
Score = 37.4 bits (85), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 50/228 (21%), Positives = 90/228 (39%), Gaps = 26/228 (11%)
Query: 127 VKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATS-FVSPKWVPQLADARDV 185
V I++ R+G Q +VE+ + L G+ ++EA VSP D+
Sbjct: 4 VGILDSTLREGEQTPGVIFTVDQRVEIAKALSDLGVSMIEAGHPAVSP----------DI 53
Query: 186 MEAV-RDLEGARLPVLTPNLKG--------FEAAIAAGAKEVAIFASASEAFSKSNINCS 236
E + R ++ + ++T + G E A +AIF S+ K+ +
Sbjct: 54 YEGIKRIVKLKKEGIITSEIVGHSRAVKRDIEIAAELEVDRIAIFYGVSDLHLKAKHKAT 113
Query: 237 IEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISL 296
E++L AK + VR + + SK A D G +S+
Sbjct: 114 REEALRTIAETISYAKNHGVKVRFTAEDGSRTDFDFLVTVSKTA------RDAGADRVSI 167
Query: 297 GDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQ 344
DT+G+ P + A+ VP + +H H+ G ++ N L +++
Sbjct: 168 ADTVGILYPSKTKELFSALTREVPNLEFDIHAHNDLGLAVANALAAIE 215
>sp|C3NHU6|HOSA_SULIN Putative homocitrate synthase OS=Sulfolobus islandicus (strain
Y.N.15.51 / Yellowstone #2) GN=YN1551_1618 PE=3 SV=1
Length = 461
Score = 37.4 bits (85), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 50/228 (21%), Positives = 90/228 (39%), Gaps = 26/228 (11%)
Query: 127 VKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATS-FVSPKWVPQLADARDV 185
V I++ R+G Q +VE+ + L G+ ++EA VSP D+
Sbjct: 4 VGILDSTLREGEQTPGVIFTVDQRVEIAKALSDLGVSMIEAGHPAVSP----------DI 53
Query: 186 MEAV-RDLEGARLPVLTPNLKG--------FEAAIAAGAKEVAIFASASEAFSKSNINCS 236
E + R ++ + ++T + G E A +AIF S+ K+ +
Sbjct: 54 YEGIKRIVKLKKEGIITSEIVGHSRAVKRDIEIAAELEVDRIAIFYGVSDLHLKAKHKAT 113
Query: 237 IEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISL 296
E++L AK + VR + + SK A D G +S+
Sbjct: 114 REEALRTIAETISYAKNHGVKVRFTAEDGSRTDFDFLVTVSKTA------RDAGADRVSI 167
Query: 297 GDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQ 344
DT+G+ P + A+ VP + +H H+ G ++ N L +++
Sbjct: 168 ADTVGILYPSKTKELFSALTREVPNLEFDIHAHNDLGLAVANALAAIE 215
>sp|C3MYM1|HOSA_SULIM Putative homocitrate synthase OS=Sulfolobus islandicus (strain
M.14.25 / Kamchatka #1) GN=M1425_1245 PE=3 SV=1
Length = 461
Score = 37.4 bits (85), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 50/228 (21%), Positives = 90/228 (39%), Gaps = 26/228 (11%)
Query: 127 VKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATS-FVSPKWVPQLADARDV 185
V I++ R+G Q +VE+ + L G+ ++EA VSP D+
Sbjct: 4 VGILDSTLREGEQTPGVIFTVDQRVEIAKALSDLGVSMIEAGHPAVSP----------DI 53
Query: 186 MEAV-RDLEGARLPVLTPNLKG--------FEAAIAAGAKEVAIFASASEAFSKSNINCS 236
E + R ++ + ++T + G E A +AIF S+ K+ +
Sbjct: 54 YEGIKRIVKLKKEGIITSEIVGHSRAVKRDIEIAAELEVDRIAIFYGVSDLHLKAKHKAT 113
Query: 237 IEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISL 296
E++L AK + VR + + SK A D G +S+
Sbjct: 114 REEALRTIAETISYAKNHGVKVRFTAEDGSRTDFDFLVTVSKTA------RDAGADRVSI 167
Query: 297 GDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQ 344
DT+G+ P + A+ VP + +H H+ G ++ N L +++
Sbjct: 168 ADTVGILYPSKTKELFSALTREVPNLEFDIHAHNDLGLAVANALAAIE 215
>sp|C4KGW9|HOSA_SULIK Putative homocitrate synthase OS=Sulfolobus islandicus (strain
M.16.4 / Kamchatka #3) GN=M164_1229 PE=3 SV=1
Length = 461
Score = 37.4 bits (85), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 50/228 (21%), Positives = 90/228 (39%), Gaps = 26/228 (11%)
Query: 127 VKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATS-FVSPKWVPQLADARDV 185
V I++ R+G Q +VE+ + L G+ ++EA VSP D+
Sbjct: 4 VGILDSTLREGEQTPGVIFTVDQRVEIAKALSDLGVSMIEAGHPAVSP----------DI 53
Query: 186 MEAV-RDLEGARLPVLTPNLKG--------FEAAIAAGAKEVAIFASASEAFSKSNINCS 236
E + R ++ + ++T + G E A +AIF S+ K+ +
Sbjct: 54 YEGIKRIVKLKKEGIITSEIVGHSRAVKRDIEIAAELEVDRIAIFYGVSDLHLKAKHKAT 113
Query: 237 IEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISL 296
E++L AK + VR + + SK A D G +S+
Sbjct: 114 REEALRTIAETISYAKNHGVKVRFTAEDGSRTDFDFLVTVSKTA------RDAGADRVSI 167
Query: 297 GDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQ 344
DT+G+ P + A+ VP + +H H+ G ++ N L +++
Sbjct: 168 ADTVGILYPSKTKELFSALTREVPNLEFDIHAHNDLGLAVANALAAIE 215
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.134 0.401
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 132,854,734
Number of Sequences: 539616
Number of extensions: 5656122
Number of successful extensions: 14860
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 195
Number of HSP's that attempted gapping in prelim test: 14767
Number of HSP's gapped (non-prelim): 227
length of query: 359
length of database: 191,569,459
effective HSP length: 119
effective length of query: 240
effective length of database: 127,355,155
effective search space: 30565237200
effective search space used: 30565237200
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (28.5 bits)