Query 018252
Match_columns 359
No_of_seqs 162 out of 1107
Neff 6.1
Searched_HMMs 46136
Date Fri Mar 29 07:25:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018252.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018252hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02746 hydroxymethylglutaryl 100.0 4.5E-60 9.8E-65 465.6 31.4 252 104-355 24-275 (347)
2 PRK05692 hydroxymethylglutaryl 100.0 1.4E-56 3E-61 432.2 31.0 233 123-355 1-233 (287)
3 cd07938 DRE_TIM_HMGL 3-hydroxy 100.0 8.6E-55 1.9E-59 417.3 29.5 227 129-355 1-227 (274)
4 KOG2368 Hydroxymethylglutaryl- 100.0 2.1E-55 4.5E-60 402.1 21.0 245 111-355 3-247 (316)
5 cd07945 DRE_TIM_CMS Leptospira 100.0 1.2E-50 2.6E-55 389.7 23.9 220 130-355 1-225 (280)
6 PRK14847 hypothetical protein; 100.0 6.5E-50 1.4E-54 390.4 26.8 252 93-355 3-274 (333)
7 cd07940 DRE_TIM_IPMS 2-isoprop 100.0 5.9E-48 1.3E-52 368.3 26.6 214 129-355 1-223 (268)
8 cd07939 DRE_TIM_NifV Streptomy 100.0 1.2E-47 2.6E-52 364.5 27.4 213 129-355 1-216 (259)
9 cd07948 DRE_TIM_HCS Saccharomy 100.0 1.8E-47 4E-52 364.5 27.3 217 127-355 1-218 (262)
10 TIGR00970 leuA_yeast 2-isoprop 100.0 1.3E-47 2.8E-52 399.0 27.9 249 96-355 2-271 (564)
11 PRK11858 aksA trans-homoaconit 100.0 2E-47 4.4E-52 381.3 28.1 218 124-355 2-222 (378)
12 TIGR02660 nifV_homocitr homoci 100.0 3.1E-47 6.8E-52 378.3 28.2 216 126-355 1-219 (365)
13 PRK00915 2-isopropylmalate syn 100.0 3.2E-47 6.9E-52 393.0 29.1 221 123-355 1-230 (513)
14 PLN03228 methylthioalkylmalate 100.0 2.2E-47 4.8E-52 391.1 27.5 232 113-355 69-320 (503)
15 cd07942 DRE_TIM_LeuA Mycobacte 100.0 2.6E-47 5.6E-52 367.0 25.5 221 128-355 3-243 (284)
16 PRK03739 2-isopropylmalate syn 100.0 6E-47 1.3E-51 393.2 28.8 250 93-355 3-272 (552)
17 TIGR00973 leuA_bact 2-isopropy 100.0 7.6E-47 1.7E-51 388.4 28.6 219 126-355 1-227 (494)
18 PLN02321 2-isopropylmalate syn 100.0 6.2E-47 1.3E-51 396.0 27.8 220 124-355 84-321 (632)
19 TIGR02090 LEU1_arch isopropylm 100.0 1.1E-46 2.3E-51 374.3 27.9 217 127-355 1-218 (363)
20 cd03174 DRE_TIM_metallolyase D 100.0 6.7E-46 1.5E-50 349.8 28.9 222 130-355 1-224 (265)
21 COG0119 LeuA Isopropylmalate/h 100.0 2.4E-46 5.2E-51 375.6 25.7 220 125-355 1-225 (409)
22 PRK09389 (R)-citramalate synth 100.0 3.9E-46 8.5E-51 382.5 27.7 218 126-355 2-220 (488)
23 cd07941 DRE_TIM_LeuA3 Desulfob 100.0 1.2E-45 2.6E-50 353.8 27.9 217 129-355 1-229 (273)
24 cd07947 DRE_TIM_Re_CS Clostrid 100.0 1.6E-45 3.4E-50 354.0 26.8 215 127-355 1-237 (279)
25 TIGR00977 LeuA_rel 2-isopropyl 100.0 5.7E-45 1.2E-49 376.5 27.7 221 126-355 1-232 (526)
26 PRK12344 putative alpha-isopro 100.0 1.4E-44 2.9E-49 373.9 28.7 219 123-355 2-235 (524)
27 cd07943 DRE_TIM_HOA 4-hydroxy- 100.0 1.1E-43 2.4E-48 338.0 27.7 209 127-355 1-219 (263)
28 PF00682 HMGL-like: HMGL-like 100.0 1.9E-43 4.1E-48 330.0 19.5 209 135-355 1-215 (237)
29 cd07937 DRE_TIM_PC_TC_5S Pyruv 100.0 6.4E-42 1.4E-46 328.4 23.6 206 129-355 1-226 (275)
30 PRK08195 4-hyroxy-2-oxovalerat 100.0 9.8E-41 2.1E-45 328.6 28.4 210 125-355 2-223 (337)
31 TIGR03217 4OH_2_O_val_ald 4-hy 100.0 1.1E-40 2.5E-45 327.6 28.6 211 125-355 1-222 (333)
32 cd07944 DRE_TIM_HOA_like 4-hyd 100.0 6E-41 1.3E-45 320.3 25.3 207 129-355 1-217 (266)
33 KOG2367 Alpha-isopropylmalate 100.0 1.8E-40 3.9E-45 329.1 25.2 235 107-355 41-285 (560)
34 PRK12331 oxaloacetate decarbox 100.0 5.5E-40 1.2E-44 333.4 27.0 210 125-355 2-231 (448)
35 PRK14041 oxaloacetate decarbox 100.0 9.7E-40 2.1E-44 332.5 26.5 209 126-355 2-230 (467)
36 PRK12330 oxaloacetate decarbox 100.0 1.3E-37 2.8E-42 318.2 27.2 213 123-355 1-234 (499)
37 TIGR01108 oadA oxaloacetate de 100.0 8.2E-38 1.8E-42 326.3 25.4 206 129-355 1-226 (582)
38 PRK09282 pyruvate carboxylase 100.0 3.9E-37 8.5E-42 321.9 27.1 210 125-355 2-231 (592)
39 PRK14040 oxaloacetate decarbox 100.0 1.1E-36 2.5E-41 318.2 27.8 214 123-355 1-232 (593)
40 PRK12581 oxaloacetate decarbox 100.0 3.6E-35 7.7E-40 298.0 26.7 214 123-355 9-240 (468)
41 TIGR02146 LysS_fung_arch homoc 100.0 3.9E-33 8.5E-38 273.1 26.4 216 129-355 1-217 (344)
42 PRK12999 pyruvate carboxylase; 100.0 3E-33 6.4E-38 310.6 28.0 217 124-355 530-768 (1146)
43 PRK14042 pyruvate carboxylase 100.0 3.4E-33 7.4E-38 291.3 25.4 212 125-355 2-231 (596)
44 TIGR01235 pyruv_carbox pyruvat 100.0 8.2E-30 1.8E-34 282.5 25.0 215 124-355 528-766 (1143)
45 COG5016 Pyruvate/oxaloacetate 100.0 7.3E-30 1.6E-34 250.3 15.4 211 124-355 3-233 (472)
46 COG1038 PycA Pyruvate carboxyl 99.8 5E-21 1.1E-25 199.9 11.5 215 124-355 533-771 (1149)
47 KOG0369 Pyruvate carboxylase [ 99.8 7.5E-18 1.6E-22 173.5 14.4 214 125-354 558-795 (1176)
48 PRK07028 bifunctional hexulose 98.4 1.3E-05 2.7E-10 81.9 16.4 175 139-351 7-188 (430)
49 PRK07094 biotin synthase; Prov 98.3 0.00017 3.6E-09 70.7 21.6 197 143-355 68-282 (323)
50 TIGR00262 trpA tryptophan synt 98.1 0.00027 5.8E-09 67.7 18.6 175 146-351 22-225 (256)
51 TIGR00423 radical SAM domain p 98.1 0.00045 9.7E-09 67.5 20.0 195 143-355 34-267 (309)
52 CHL00200 trpA tryptophan synth 98.0 0.00038 8.3E-09 67.0 17.8 175 146-350 27-228 (263)
53 PLN02389 biotin synthase 98.0 0.0022 4.9E-08 64.8 22.5 191 144-350 115-326 (379)
54 TIGR03551 F420_cofH 7,8-dideme 98.0 0.00069 1.5E-08 67.2 18.5 193 143-355 68-303 (343)
55 PLN02591 tryptophan synthase 97.9 0.0014 3E-08 62.7 19.4 175 146-351 14-216 (250)
56 PRK06256 biotin synthase; Vali 97.9 0.0028 6E-08 62.5 21.5 174 144-330 90-279 (336)
57 PRK09196 fructose-1,6-bisphosp 97.9 0.0013 2.8E-08 65.6 18.8 212 135-353 14-277 (347)
58 TIGR03699 mena_SCO4550 menaqui 97.8 0.0018 3.8E-08 64.1 19.2 197 144-355 71-300 (340)
59 PRK07315 fructose-bisphosphate 97.8 0.0051 1.1E-07 60.2 20.9 196 143-354 24-233 (293)
60 TIGR03128 RuMP_HxlA 3-hexulose 97.8 0.0013 2.9E-08 60.0 16.0 167 144-352 8-185 (206)
61 PRK13125 trpA tryptophan synth 97.8 0.0049 1.1E-07 58.4 20.2 176 145-350 15-211 (244)
62 PRK07084 fructose-bisphosphate 97.8 0.0047 1E-07 61.0 20.4 197 143-353 30-268 (321)
63 PRK06801 hypothetical protein; 97.7 0.0053 1.1E-07 59.9 20.2 197 135-354 14-234 (286)
64 PRK07360 FO synthase subunit 2 97.7 0.0022 4.8E-08 64.5 17.9 198 142-358 88-328 (371)
65 PRK08445 hypothetical protein; 97.7 0.0045 9.8E-08 61.8 19.0 193 143-355 71-305 (348)
66 TIGR03700 mena_SCO4494 putativ 97.7 0.0045 9.8E-08 61.7 19.0 196 144-355 78-309 (351)
67 PRK08185 hypothetical protein; 97.6 0.014 3.1E-07 56.8 21.1 196 136-353 10-228 (283)
68 PRK06552 keto-hydroxyglutarate 97.6 0.0047 1E-07 57.7 17.1 154 145-352 22-182 (213)
69 PRK13399 fructose-1,6-bisphosp 97.6 0.0068 1.5E-07 60.5 19.2 211 136-353 15-277 (347)
70 TIGR01521 FruBisAldo_II_B fruc 97.6 0.007 1.5E-07 60.4 19.1 210 136-353 13-275 (347)
71 TIGR01859 fruc_bis_ald_ fructo 97.6 0.017 3.7E-07 56.2 21.3 196 143-354 22-231 (282)
72 TIGR00433 bioB biotin syntheta 97.6 0.038 8.2E-07 53.1 23.5 194 144-351 61-271 (296)
73 cd04724 Tryptophan_synthase_al 97.5 0.0064 1.4E-07 57.6 17.3 169 146-350 12-212 (242)
74 PRK08444 hypothetical protein; 97.5 0.0051 1.1E-07 61.7 17.3 200 142-355 77-308 (353)
75 TIGR01858 tag_bisphos_ald clas 97.5 0.014 3.1E-07 56.7 19.7 199 136-354 13-231 (282)
76 cd00947 TBP_aldolase_IIB Tagat 97.5 0.021 4.6E-07 55.4 20.6 192 143-354 19-227 (276)
77 PRK08610 fructose-bisphosphate 97.5 0.024 5.2E-07 55.4 20.8 193 143-354 24-234 (286)
78 PRK15108 biotin synthase; Prov 97.5 0.046 1E-06 54.6 23.4 192 144-350 75-284 (345)
79 PRK12737 gatY tagatose-bisphos 97.5 0.017 3.8E-07 56.2 19.8 200 135-354 14-233 (284)
80 cd00945 Aldolase_Class_I Class 97.5 0.057 1.2E-06 47.9 21.7 171 146-350 11-198 (201)
81 PRK07709 fructose-bisphosphate 97.5 0.038 8.3E-07 53.9 22.0 193 143-354 24-234 (285)
82 PRK05718 keto-hydroxyglutarate 97.5 0.012 2.7E-07 54.9 17.6 157 145-355 24-186 (212)
83 PRK13111 trpA tryptophan synth 97.4 0.011 2.4E-07 56.8 17.6 149 145-319 23-199 (258)
84 PRK09195 gatY tagatose-bisphos 97.4 0.02 4.3E-07 55.8 19.5 199 136-354 15-233 (284)
85 PRK09240 thiH thiamine biosynt 97.4 0.019 4.1E-07 57.8 19.8 172 143-329 102-299 (371)
86 cd04726 KGPDC_HPS 3-Keto-L-gul 97.4 0.019 4.1E-07 52.0 17.9 166 144-352 9-185 (202)
87 PRK05835 fructose-bisphosphate 97.4 0.043 9.3E-07 54.1 21.1 193 143-353 23-255 (307)
88 TIGR00167 cbbA ketose-bisphosp 97.4 0.044 9.5E-07 53.6 21.0 193 143-354 24-237 (288)
89 PRK12857 fructose-1,6-bisphosp 97.3 0.053 1.1E-06 52.9 21.1 192 143-354 24-233 (284)
90 PRK12738 kbaY tagatose-bisphos 97.3 0.061 1.3E-06 52.5 21.5 191 143-353 24-232 (286)
91 PTZ00413 lipoate synthase; Pro 97.3 0.022 4.8E-07 57.6 18.7 177 142-330 174-380 (398)
92 PRK07998 gatY putative fructos 97.3 0.038 8.3E-07 53.9 19.7 191 143-353 24-229 (283)
93 TIGR01182 eda Entner-Doudoroff 97.3 0.026 5.7E-07 52.5 17.8 152 145-350 17-173 (204)
94 COG0159 TrpA Tryptophan syntha 97.3 0.019 4.2E-07 55.3 17.0 154 145-326 28-210 (265)
95 cd00959 DeoC 2-deoxyribose-5-p 97.3 0.028 6.1E-07 51.7 17.5 179 144-353 13-203 (203)
96 PRK12928 lipoyl synthase; Prov 97.2 0.014 3E-07 57.1 15.7 164 142-316 84-268 (290)
97 PRK13397 3-deoxy-7-phosphohept 97.2 0.052 1.1E-06 52.0 19.2 181 144-352 25-220 (250)
98 TIGR02351 thiH thiazole biosyn 97.2 0.032 6.8E-07 56.1 18.6 177 143-329 101-298 (366)
99 PLN02428 lipoic acid synthase 97.2 0.03 6.5E-07 56.1 18.0 161 143-315 128-310 (349)
100 PF01116 F_bP_aldolase: Fructo 97.2 0.018 3.9E-07 56.2 16.2 192 143-353 23-235 (287)
101 TIGR01163 rpe ribulose-phospha 97.2 0.17 3.7E-06 45.9 21.7 173 145-351 8-191 (210)
102 PF00290 Trp_syntA: Tryptophan 97.2 0.014 2.9E-07 56.3 14.8 175 145-351 21-224 (259)
103 PRK09613 thiH thiamine biosynt 97.2 0.057 1.2E-06 56.2 20.5 194 142-353 112-338 (469)
104 PRK05927 hypothetical protein; 97.1 0.031 6.8E-07 55.9 17.6 197 143-355 74-306 (350)
105 TIGR00126 deoC deoxyribose-pho 97.1 0.037 8E-07 51.7 16.9 184 142-356 12-207 (211)
106 PRK09197 fructose-bisphosphate 97.1 0.12 2.5E-06 51.8 20.9 199 143-353 27-279 (350)
107 PRK05301 pyrroloquinoline quin 97.1 0.11 2.4E-06 51.9 21.1 139 143-297 44-189 (378)
108 PRK06806 fructose-bisphosphate 97.1 0.17 3.6E-06 49.3 21.3 197 136-353 15-230 (281)
109 PRK13361 molybdenum cofactor b 97.0 0.05 1.1E-06 53.7 17.9 136 143-293 43-186 (329)
110 PRK00507 deoxyribose-phosphate 97.0 0.09 2E-06 49.4 18.6 185 142-357 16-212 (221)
111 PF01081 Aldolase: KDPG and KH 97.0 0.029 6.2E-07 51.9 14.8 153 145-350 17-173 (196)
112 cd00452 KDPG_aldolase KDPG and 97.0 0.11 2.4E-06 47.2 18.1 158 145-354 13-172 (190)
113 PRK06015 keto-hydroxyglutarate 97.0 0.15 3.3E-06 47.3 19.1 150 145-348 13-167 (201)
114 TIGR02109 PQQ_syn_pqqE coenzym 97.0 0.099 2.2E-06 51.8 19.3 139 143-296 35-179 (358)
115 TIGR00510 lipA lipoate synthas 96.9 0.047 1E-06 53.7 16.6 157 145-312 91-267 (302)
116 TIGR01496 DHPS dihydropteroate 96.9 0.27 5.8E-06 47.2 21.1 190 139-351 14-240 (257)
117 PRK05926 hypothetical protein; 96.9 0.086 1.9E-06 53.2 18.4 196 142-355 96-330 (370)
118 cd00958 DhnA Class I fructose- 96.9 0.014 3.1E-07 54.5 12.0 190 142-352 15-213 (235)
119 COG2896 MoaA Molybdenum cofact 96.9 0.22 4.7E-06 49.5 20.4 145 143-301 41-193 (322)
120 PLN02951 Molybderin biosynthes 96.9 0.12 2.7E-06 52.0 19.2 163 143-320 88-264 (373)
121 COG0320 LipA Lipoate synthase 96.8 0.05 1.1E-06 52.7 15.1 168 134-315 86-276 (306)
122 COG0191 Fba Fructose/tagatose 96.8 0.15 3.2E-06 49.7 18.5 201 135-352 14-233 (286)
123 PRK05481 lipoyl synthase; Prov 96.8 0.12 2.6E-06 50.4 18.0 143 143-296 78-230 (289)
124 PRK13398 3-deoxy-7-phosphohept 96.8 0.36 7.7E-06 46.7 20.9 180 146-354 39-234 (266)
125 PRK09234 fbiC FO synthase; Rev 96.8 0.058 1.3E-06 59.9 17.4 198 141-355 553-790 (843)
126 COG0826 Collagenase and relate 96.7 0.026 5.7E-07 56.5 13.0 114 196-329 8-121 (347)
127 PRK08508 biotin synthase; Prov 96.7 0.25 5.3E-06 47.8 19.4 188 145-349 40-246 (279)
128 PLN02858 fructose-bisphosphate 96.7 0.13 2.8E-06 60.1 20.4 200 134-353 1109-1331(1378)
129 cd00019 AP2Ec AP endonuclease 96.7 0.083 1.8E-06 50.3 15.6 174 152-332 14-218 (279)
130 PRK15452 putative protease; Pr 96.6 0.04 8.6E-07 56.9 13.9 133 195-351 4-139 (443)
131 PRK13396 3-deoxy-7-phosphohept 96.6 0.26 5.6E-06 49.5 18.7 178 145-352 112-307 (352)
132 PRK07114 keto-hydroxyglutarate 96.5 0.26 5.6E-06 46.4 17.7 157 145-355 24-191 (222)
133 KOG3111 D-ribulose-5-phosphate 96.5 0.12 2.7E-06 47.7 14.7 161 152-351 21-195 (224)
134 TIGR03550 F420_cofG 7,8-dideme 96.5 0.15 3.2E-06 50.3 16.7 201 142-355 32-268 (322)
135 TIGR02666 moaA molybdenum cofa 96.5 0.34 7.4E-06 47.7 19.2 166 143-320 41-219 (334)
136 TIGR01520 FruBisAldo_II_A fruc 96.5 0.63 1.4E-05 46.8 20.8 207 135-353 23-287 (357)
137 TIGR03470 HpnH hopanoid biosyn 96.4 0.27 5.9E-06 48.4 18.0 157 144-318 58-228 (318)
138 PF01791 DeoC: DeoC/LacD famil 96.4 0.049 1.1E-06 51.1 12.1 189 149-354 20-229 (236)
139 PRK09140 2-dehydro-3-deoxy-6-p 96.4 0.33 7.2E-06 45.1 17.3 155 145-351 19-177 (206)
140 cd00946 FBP_aldolase_IIA Class 96.4 0.68 1.5E-05 46.5 20.3 199 143-353 22-275 (345)
141 PRK07535 methyltetrahydrofolat 96.4 0.39 8.5E-06 46.2 18.2 180 145-349 22-224 (261)
142 TIGR00284 dihydropteroate synt 96.4 0.57 1.2E-05 49.2 20.7 172 148-352 165-350 (499)
143 PRK12595 bifunctional 3-deoxy- 96.3 0.46 1E-05 47.9 19.3 176 146-351 130-322 (360)
144 PRK07226 fructose-bisphosphate 96.3 0.12 2.7E-06 49.5 14.2 181 144-352 35-230 (267)
145 PRK08883 ribulose-phosphate 3- 96.3 0.36 7.8E-06 45.3 16.9 164 149-351 13-193 (220)
146 TIGR01210 conserved hypothetic 96.2 0.23 4.9E-06 49.0 16.2 145 169-319 78-246 (313)
147 TIGR01769 GGGP geranylgeranylg 96.2 0.6 1.3E-05 43.5 18.0 178 148-350 11-202 (205)
148 PRK06245 cofG FO synthase subu 96.2 0.28 6.1E-06 48.3 16.9 202 144-356 40-273 (336)
149 PRK06267 hypothetical protein; 96.2 0.44 9.6E-06 47.6 18.4 189 144-350 62-262 (350)
150 TIGR02320 PEP_mutase phosphoen 96.2 0.39 8.4E-06 46.9 17.5 189 154-352 22-239 (285)
151 PRK00164 moaA molybdenum cofac 96.2 0.43 9.4E-06 46.8 18.1 138 142-292 46-189 (331)
152 TIGR01361 DAHP_synth_Bsub phos 96.2 0.24 5.1E-06 47.7 15.8 180 145-354 36-232 (260)
153 TIGR03586 PseI pseudaminic aci 96.2 0.48 1E-05 47.2 18.2 179 145-354 14-223 (327)
154 PRK08091 ribulose-phosphate 3- 96.2 0.23 5.1E-06 46.9 15.1 174 147-356 24-211 (228)
155 PTZ00170 D-ribulose-5-phosphat 96.1 1.2 2.6E-05 41.9 20.4 171 145-350 16-198 (228)
156 PRK08005 epimerase; Validated 96.1 0.48 1E-05 44.3 16.9 166 147-350 12-188 (210)
157 TIGR01949 AroFGH_arch predicte 96.1 0.13 2.8E-06 49.1 13.5 191 128-353 21-227 (258)
158 cd04729 NanE N-acetylmannosami 96.1 0.74 1.6E-05 42.6 18.3 185 118-352 2-205 (219)
159 COG0502 BioB Biotin synthase a 96.1 0.66 1.4E-05 46.3 18.7 197 142-353 81-294 (335)
160 cd00453 FTBP_aldolase_II Fruct 96.1 0.94 2E-05 45.3 19.5 199 143-354 19-273 (340)
161 cd00331 IGPS Indole-3-glycerol 96.1 1.2 2.5E-05 41.1 19.8 168 145-351 28-199 (217)
162 PRK13307 bifunctional formalde 96.0 0.71 1.5E-05 47.1 18.9 166 145-350 182-355 (391)
163 cd00739 DHPS DHPS subgroup of 96.0 1.6 3.5E-05 41.9 20.2 196 136-352 12-243 (257)
164 TIGR02668 moaA_archaeal probab 95.9 0.69 1.5E-05 44.7 17.4 135 143-292 38-179 (302)
165 TIGR03471 HpnJ hopanoid biosyn 95.9 0.33 7.2E-06 50.2 16.0 156 144-317 226-389 (472)
166 TIGR00539 hemN_rel putative ox 95.8 0.55 1.2E-05 46.8 17.0 143 145-296 32-186 (360)
167 cd04740 DHOD_1B_like Dihydroor 95.8 0.2 4.4E-06 48.4 13.5 102 237-352 74-185 (296)
168 COG3473 Maleate cis-trans isom 95.8 0.46 9.9E-06 44.5 14.6 147 149-320 55-204 (238)
169 KOG4175 Tryptophan synthase al 95.7 1.1 2.4E-05 41.8 17.0 152 146-326 30-212 (268)
170 cd00423 Pterin_binding Pterin 95.7 2 4.2E-05 41.0 21.8 136 142-296 18-171 (258)
171 PRK11613 folP dihydropteroate 95.7 2.3 5E-05 41.5 22.7 202 128-352 19-256 (282)
172 smart00518 AP2Ec AP endonuclea 95.6 1.6 3.4E-05 41.3 18.6 172 152-333 14-216 (273)
173 PF03102 NeuB: NeuB family; I 95.6 0.51 1.1E-05 45.0 15.1 150 143-355 51-203 (241)
174 cd02803 OYE_like_FMN_family Ol 95.6 0.61 1.3E-05 45.5 16.2 140 207-352 147-310 (327)
175 PRK09722 allulose-6-phosphate 95.6 0.79 1.7E-05 43.4 16.1 170 152-351 19-195 (229)
176 PRK12457 2-dehydro-3-deoxyphos 95.6 1.8 3.8E-05 42.2 18.5 179 145-350 27-234 (281)
177 COG0036 Rpe Pentose-5-phosphat 95.6 0.66 1.4E-05 43.7 15.1 169 148-351 16-195 (220)
178 PRK01130 N-acetylmannosamine-6 95.5 1.2 2.7E-05 41.1 17.1 163 146-352 21-201 (221)
179 PRK08673 3-deoxy-7-phosphohept 95.5 1.7 3.8E-05 43.4 19.0 178 146-353 105-299 (335)
180 smart00729 Elp3 Elongator prot 95.5 1.5 3.2E-05 38.5 16.8 142 143-298 28-188 (216)
181 TIGR00538 hemN oxygen-independ 95.5 1.2 2.5E-05 46.0 18.2 148 161-317 102-273 (455)
182 PRK08745 ribulose-phosphate 3- 95.4 0.59 1.3E-05 44.0 14.5 169 148-350 16-196 (223)
183 PRK13347 coproporphyrinogen II 95.4 0.86 1.9E-05 47.1 16.9 111 181-298 121-240 (453)
184 TIGR02146 LysS_fung_arch homoc 95.3 8.3E-08 1.8E-12 94.2 -33.5 77 278-355 111-203 (344)
185 PRK08227 autoinducer 2 aldolas 95.3 0.93 2E-05 43.9 15.7 123 206-352 99-225 (264)
186 PRK14057 epimerase; Provisiona 95.3 0.81 1.7E-05 44.0 15.1 169 147-351 31-219 (254)
187 cd01335 Radical_SAM Radical SA 95.3 1.3 2.9E-05 38.1 15.5 135 148-292 31-171 (204)
188 PRK09249 coproporphyrinogen II 95.2 2 4.4E-05 44.3 19.1 126 160-298 101-239 (453)
189 PRK07259 dihydroorotate dehydr 95.2 0.45 9.8E-06 46.2 13.6 103 237-352 76-188 (301)
190 PRK08446 coproporphyrinogen II 95.1 1.1 2.3E-05 44.8 16.2 126 161-296 51-184 (350)
191 PLN03033 2-dehydro-3-deoxyphos 95.1 2.5 5.4E-05 41.3 17.9 176 146-350 28-237 (290)
192 TIGR02026 BchE magnesium-proto 95.1 0.99 2.2E-05 47.2 16.6 156 145-318 222-390 (497)
193 PRK09250 fructose-bisphosphate 95.1 1.2 2.6E-05 44.7 16.2 133 206-350 151-315 (348)
194 TIGR01211 ELP3 histone acetylt 95.1 3.1 6.7E-05 44.0 20.1 109 204-320 206-334 (522)
195 PRK05660 HemN family oxidoredu 95.1 1.6 3.5E-05 44.0 17.4 128 160-296 57-193 (378)
196 TIGR01579 MiaB-like-C MiaB-lik 95.0 1.7 3.8E-05 44.1 17.6 145 143-295 165-323 (414)
197 PRK07455 keto-hydroxyglutarate 94.9 2.9 6.2E-05 38.1 18.0 156 146-352 22-179 (187)
198 COG0800 Eda 2-keto-3-deoxy-6-p 94.9 2.4 5.2E-05 39.7 16.5 160 145-355 22-184 (211)
199 PF01261 AP_endonuc_2: Xylose 94.9 0.061 1.3E-06 47.8 5.9 169 154-333 1-196 (213)
200 cd04735 OYE_like_4_FMN Old yel 94.9 0.94 2E-05 45.3 15.0 140 207-351 150-311 (353)
201 TIGR03234 OH-pyruv-isom hydrox 94.8 2 4.3E-05 40.2 16.3 167 150-333 16-209 (254)
202 PRK05628 coproporphyrinogen II 94.8 1.6 3.4E-05 43.8 16.4 108 182-296 78-194 (375)
203 PRK09856 fructoselysine 3-epim 94.8 1.3 2.8E-05 41.8 15.1 173 149-334 14-214 (275)
204 cd02810 DHOD_DHPD_FMN Dihydroo 94.7 0.95 2.1E-05 43.4 14.3 79 275-354 109-197 (289)
205 PRK13753 dihydropteroate synth 94.7 3.4 7.4E-05 40.3 17.9 189 142-351 19-246 (279)
206 PRK13523 NADPH dehydrogenase N 94.7 1.1 2.4E-05 44.6 15.0 136 207-351 148-303 (337)
207 TIGR01303 IMP_DH_rel_1 IMP deh 94.7 0.13 2.8E-06 53.7 8.6 72 277-354 224-295 (475)
208 TIGR00559 pdxJ pyridoxine 5'-p 94.7 0.18 3.9E-06 47.9 8.8 107 193-316 122-236 (237)
209 cd02933 OYE_like_FMN Old yello 94.7 1.2 2.7E-05 44.3 15.2 140 207-352 158-313 (338)
210 PRK06294 coproporphyrinogen II 94.6 1.1 2.5E-05 44.9 15.0 107 183-296 78-189 (370)
211 COG2513 PrpB PEP phosphonomuta 94.6 0.4 8.6E-06 46.8 11.1 134 207-350 31-183 (289)
212 PRK07565 dihydroorotate dehydr 94.6 0.83 1.8E-05 45.2 13.8 105 236-353 85-197 (334)
213 TIGR01212 radical SAM protein, 94.6 1.7 3.6E-05 42.6 15.7 160 143-334 89-270 (302)
214 PRK00278 trpC indole-3-glycero 94.6 4.5 9.7E-05 38.8 18.3 162 146-350 68-237 (260)
215 TIGR02320 PEP_mutase phosphoen 94.5 0.66 1.4E-05 45.3 12.6 107 235-352 61-188 (285)
216 PRK08599 coproporphyrinogen II 94.5 2.2 4.8E-05 42.7 16.7 95 195-296 87-186 (377)
217 PRK13210 putative L-xylulose 5 94.5 1.8 3.9E-05 41.0 15.3 171 145-332 16-213 (284)
218 TIGR00587 nfo apurinic endonuc 94.4 4.3 9.4E-05 38.9 18.0 172 151-332 14-219 (274)
219 PRK06852 aldolase; Validated 94.4 0.7 1.5E-05 45.6 12.6 131 206-351 120-263 (304)
220 PRK14338 (dimethylallyl)adenos 94.4 1.9 4.1E-05 44.7 16.5 145 143-295 182-340 (459)
221 PRK12858 tagatose 1,6-diphosph 94.4 1.8 4E-05 43.3 15.7 135 206-347 111-268 (340)
222 COG1856 Uncharacterized homolo 94.4 4.8 0.0001 38.3 21.0 193 147-350 41-249 (275)
223 TIGR03822 AblA_like_2 lysine-2 94.4 5.8 0.00013 39.2 19.1 159 143-321 117-296 (321)
224 cd04739 DHOD_like Dihydroorota 94.4 1.1 2.3E-05 44.4 14.0 80 274-354 109-196 (325)
225 PRK05904 coproporphyrinogen II 94.4 2.6 5.5E-05 42.3 16.7 106 183-295 76-188 (353)
226 PF04055 Radical_SAM: Radical 94.4 1.3 2.9E-05 37.1 12.8 132 142-285 25-165 (166)
227 PRK09989 hypothetical protein; 94.3 1.6 3.4E-05 41.2 14.4 164 150-330 17-207 (258)
228 PRK05799 coproporphyrinogen II 94.3 2.6 5.5E-05 42.2 16.6 95 194-296 85-185 (374)
229 PRK11320 prpB 2-methylisocitra 94.2 2.1 4.5E-05 42.0 15.4 153 154-315 30-201 (292)
230 TIGR03569 NeuB_NnaB N-acetylne 94.2 2.3 4.9E-05 42.5 15.8 96 246-355 124-225 (329)
231 cd01320 ADA Adenosine deaminas 94.2 2.8 6E-05 40.8 16.3 133 206-351 78-215 (325)
232 cd00377 ICL_PEPM Members of th 94.1 0.73 1.6E-05 43.8 11.7 106 235-350 52-177 (243)
233 PLN02334 ribulose-phosphate 3- 94.0 5.2 0.00011 37.3 19.3 172 148-351 20-200 (229)
234 COG2513 PrpB PEP phosphonomuta 94.0 2.7 5.9E-05 41.1 15.5 155 153-316 30-202 (289)
235 cd04722 TIM_phosphate_binding 94.0 1.7 3.8E-05 37.7 13.2 128 205-353 16-143 (200)
236 PF00701 DHDPS: Dihydrodipicol 94.0 2.5 5.4E-05 40.7 15.3 107 207-329 28-135 (289)
237 COG2876 AroA 3-deoxy-D-arabino 94.0 2.6 5.6E-05 40.9 14.8 204 124-354 27-250 (286)
238 cd02930 DCR_FMN 2,4-dienoyl-Co 93.9 2.2 4.8E-05 42.6 15.3 137 207-351 143-304 (353)
239 TIGR00089 RNA modification enz 93.9 4 8.6E-05 41.7 17.4 146 143-296 166-325 (429)
240 PRK14332 (dimethylallyl)adenos 93.9 3.2 6.9E-05 43.0 16.8 141 143-294 181-335 (449)
241 COG0535 Predicted Fe-S oxidore 93.9 3.6 7.8E-05 39.7 16.4 138 143-296 46-192 (347)
242 PRK14334 (dimethylallyl)adenos 93.9 2.6 5.7E-05 43.3 16.1 143 144-295 166-322 (440)
243 cd04733 OYE_like_2_FMN Old yel 93.8 1.6 3.5E-05 43.2 14.0 137 207-352 155-321 (338)
244 COG0269 SgbH 3-hexulose-6-phos 93.8 1.4 3E-05 41.4 12.5 172 139-350 7-189 (217)
245 TIGR01362 KDO8P_synth 3-deoxy- 93.8 6.8 0.00015 37.8 18.2 176 146-350 14-218 (258)
246 PRK14325 (dimethylallyl)adenos 93.7 4.3 9.3E-05 41.7 17.4 144 144-295 175-334 (444)
247 PRK07379 coproporphyrinogen II 93.7 2.5 5.4E-05 43.0 15.5 97 193-296 100-201 (400)
248 PF13714 PEP_mutase: Phosphoen 93.6 2.4 5.3E-05 40.3 14.3 181 154-352 22-218 (238)
249 PF04481 DUF561: Protein of un 93.6 3.6 7.9E-05 38.8 14.9 178 143-352 22-213 (242)
250 TIGR02319 CPEP_Pphonmut carbox 93.6 4 8.7E-05 40.1 16.0 187 152-352 27-232 (294)
251 cd02810 DHOD_DHPD_FMN Dihydroo 93.6 1.9 4.1E-05 41.4 13.6 132 207-353 117-272 (289)
252 TIGR01290 nifB nitrogenase cof 93.5 11 0.00023 39.1 22.7 145 143-296 58-222 (442)
253 PRK08207 coproporphyrinogen II 93.4 2.2 4.8E-05 44.7 14.8 108 204-318 269-391 (488)
254 TIGR02317 prpB methylisocitrat 93.4 2.7 5.9E-05 41.1 14.3 184 154-353 26-229 (285)
255 PRK05283 deoxyribose-phosphate 93.3 8.1 0.00018 37.3 17.3 150 143-317 21-189 (257)
256 PRK01060 endonuclease IV; Prov 93.3 7.6 0.00017 36.8 17.8 170 150-332 14-219 (281)
257 cd02932 OYE_YqiM_FMN Old yello 93.3 3.9 8.5E-05 40.4 15.6 137 207-352 160-319 (336)
258 TIGR01496 DHPS dihydropteroate 93.3 0.54 1.2E-05 45.1 9.2 78 270-353 15-102 (257)
259 cd00377 ICL_PEPM Members of th 93.2 5 0.00011 38.1 15.7 188 152-353 20-226 (243)
260 COG0274 DeoC Deoxyribose-phosp 93.2 7.8 0.00017 36.7 19.3 184 142-354 18-213 (228)
261 COG2100 Predicted Fe-S oxidore 93.2 4.6 9.9E-05 40.4 15.5 176 132-317 124-323 (414)
262 PRK12677 xylose isomerase; Pro 93.2 3.1 6.8E-05 42.3 15.1 177 149-331 32-246 (384)
263 COG1060 ThiH Thiamine biosynth 93.2 3.2 7E-05 42.0 15.0 219 125-355 66-321 (370)
264 cd00954 NAL N-Acetylneuraminic 93.2 2 4.4E-05 41.5 13.2 45 275-319 81-126 (288)
265 PRK14340 (dimethylallyl)adenos 93.2 1.6 3.4E-05 45.1 13.1 142 143-295 176-333 (445)
266 PRK08208 coproporphyrinogen II 93.0 4.1 8.9E-05 41.8 15.9 87 205-298 142-229 (430)
267 TIGR02990 ectoine_eutA ectoine 93.0 1.9 4.2E-05 40.9 12.4 138 155-320 65-206 (239)
268 PRK10605 N-ethylmaleimide redu 92.9 4.2 9E-05 40.9 15.4 141 207-352 165-320 (362)
269 PRK13209 L-xylulose 5-phosphat 92.9 6.4 0.00014 37.3 16.1 113 207-332 105-218 (283)
270 COG2089 SpsE Sialic acid synth 92.9 2.5 5.3E-05 42.1 13.2 78 274-355 157-237 (347)
271 PRK05198 2-dehydro-3-deoxyphos 92.9 9.6 0.00021 36.9 18.1 176 146-350 22-226 (264)
272 PRK05718 keto-hydroxyglutarate 92.9 1.5 3.3E-05 40.9 11.4 69 274-351 24-92 (212)
273 cd00952 CHBPH_aldolase Trans-o 92.9 2.9 6.3E-05 41.0 13.9 98 207-319 35-133 (309)
274 PF00834 Ribul_P_3_epim: Ribul 92.8 0.088 1.9E-06 48.8 3.1 165 149-351 13-192 (201)
275 PTZ00314 inosine-5'-monophosph 92.8 2.7 5.8E-05 44.2 14.4 133 147-299 240-375 (495)
276 COG2185 Sbm Methylmalonyl-CoA 92.8 3.1 6.6E-05 36.7 12.4 108 151-315 30-137 (143)
277 PRK13745 anaerobic sulfatase-m 92.8 12 0.00025 38.2 18.7 142 143-296 46-200 (412)
278 TIGR03849 arch_ComA phosphosul 92.8 0.69 1.5E-05 44.1 9.0 102 243-350 42-151 (237)
279 COG1830 FbaB DhnA-type fructos 92.7 2.2 4.8E-05 41.2 12.4 123 206-350 102-234 (265)
280 PRK14327 (dimethylallyl)adenos 92.7 6.2 0.00014 41.6 16.9 145 143-295 239-397 (509)
281 TIGR03551 F420_cofH 7,8-dideme 92.7 0.49 1.1E-05 47.0 8.4 80 273-352 69-157 (343)
282 PRK10481 hypothetical protein; 92.7 2.6 5.7E-05 39.8 12.8 138 130-313 58-202 (224)
283 TIGR03821 AblA_like_1 lysine-2 92.7 11 0.00024 37.3 17.8 159 144-321 124-302 (321)
284 PRK06843 inosine 5-monophospha 92.7 0.43 9.2E-06 48.9 8.0 70 279-354 154-223 (404)
285 PRK14024 phosphoribosyl isomer 92.6 8.9 0.00019 36.2 16.5 158 149-328 33-197 (241)
286 PRK13585 1-(5-phosphoribosyl)- 92.6 8.8 0.00019 35.7 16.9 181 148-352 32-221 (241)
287 cd04734 OYE_like_3_FMN Old yel 92.6 5.3 0.00011 39.8 15.5 139 207-351 147-313 (343)
288 TIGR01501 MthylAspMutase methy 92.6 4.8 0.0001 35.0 13.3 113 149-313 17-129 (134)
289 TIGR02317 prpB methylisocitrat 92.5 1.8 3.9E-05 42.3 11.8 133 208-350 27-178 (285)
290 TIGR02631 xylA_Arthro xylose i 92.5 4.5 9.7E-05 41.1 15.1 177 146-331 30-247 (382)
291 TIGR01125 MiaB-like tRNA modif 92.5 5.8 0.00013 40.6 16.0 143 144-294 163-319 (430)
292 cd00429 RPE Ribulose-5-phospha 92.4 7.9 0.00017 34.8 19.7 173 145-351 9-192 (211)
293 cd00408 DHDPS-like Dihydrodipi 92.4 3.4 7.5E-05 39.4 13.6 105 207-327 24-129 (281)
294 cd00950 DHDPS Dihydrodipicolin 92.4 3.4 7.3E-05 39.6 13.5 105 207-327 27-132 (284)
295 PRK14331 (dimethylallyl)adenos 92.4 4.8 0.0001 41.4 15.3 144 143-295 173-330 (437)
296 PRK09206 pyruvate kinase; Prov 92.4 14 0.0003 38.8 18.7 188 145-350 170-374 (470)
297 COG0821 gcpE 1-hydroxy-2-methy 92.4 7.4 0.00016 39.0 15.7 100 146-268 34-134 (361)
298 PRK14335 (dimethylallyl)adenos 92.3 8.5 0.00018 39.8 17.2 143 144-294 180-342 (455)
299 cd00952 CHBPH_aldolase Trans-o 92.3 0.97 2.1E-05 44.4 9.8 82 272-353 24-110 (309)
300 cd04740 DHOD_1B_like Dihydroor 92.3 11 0.00024 36.2 19.0 128 207-354 108-261 (296)
301 PRK08508 biotin synthase; Prov 92.2 0.67 1.5E-05 44.8 8.5 39 275-314 73-111 (279)
302 cd04732 HisA HisA. Phosphorib 92.2 9.3 0.0002 35.2 17.3 182 147-351 28-217 (234)
303 COG1242 Predicted Fe-S oxidore 92.2 7.7 0.00017 38.0 15.4 82 240-327 166-263 (312)
304 PRK14330 (dimethylallyl)adenos 92.1 9.9 0.00021 39.0 17.3 144 144-295 168-325 (434)
305 TIGR01859 fruc_bis_ald_ fructo 92.1 2.4 5.1E-05 41.3 12.1 95 244-350 4-101 (282)
306 TIGR01302 IMP_dehydrog inosine 92.0 2 4.4E-05 44.4 12.2 162 148-341 223-390 (450)
307 PTZ00314 inosine-5'-monophosph 92.0 0.86 1.9E-05 47.8 9.5 73 275-354 239-311 (495)
308 cd00951 KDGDH 5-dehydro-4-deox 92.0 2 4.3E-05 41.7 11.4 81 272-352 16-100 (289)
309 PRK11320 prpB 2-methylisocitra 92.0 2.9 6.3E-05 41.0 12.6 133 208-350 31-183 (292)
310 cd01321 ADGF Adenosine deamina 91.9 6 0.00013 39.5 15.1 142 207-355 76-231 (345)
311 cd00959 DeoC 2-deoxyribose-5-p 91.9 5.7 0.00012 36.4 13.9 88 267-356 60-154 (203)
312 PRK14336 (dimethylallyl)adenos 91.9 7.4 0.00016 39.8 16.0 145 143-295 151-309 (418)
313 PRK03170 dihydrodipicolinate s 91.9 1.2 2.6E-05 43.1 9.7 81 272-352 17-102 (292)
314 TIGR02313 HpaI-NOT-DapA 2,4-di 91.8 7.4 0.00016 37.9 15.2 11 247-257 87-97 (294)
315 PRK09358 adenosine deaminase; 91.8 5.2 0.00011 39.3 14.3 134 205-351 85-224 (340)
316 PF01261 AP_endonuc_2: Xylose 91.7 4.2 9E-05 35.9 12.5 119 207-334 1-138 (213)
317 PRK00043 thiE thiamine-phospha 91.6 10 0.00022 34.3 17.7 173 121-352 4-187 (212)
318 TIGR00735 hisF imidazoleglycer 91.5 13 0.00028 35.3 16.2 181 148-352 30-228 (254)
319 PTZ00300 pyruvate kinase; Prov 91.5 14 0.00031 38.5 17.5 190 144-350 144-352 (454)
320 TIGR00126 deoC deoxyribose-pho 91.4 8.4 0.00018 36.0 14.4 93 263-357 57-156 (211)
321 TIGR01334 modD putative molybd 91.4 9.8 0.00021 37.1 15.4 139 193-355 121-265 (277)
322 PRK05265 pyridoxine 5'-phospha 91.4 0.77 1.7E-05 43.7 7.5 117 183-316 113-237 (239)
323 TIGR03151 enACPred_II putative 91.3 4.5 9.8E-05 39.8 13.2 124 195-356 67-193 (307)
324 cd02940 DHPD_FMN Dihydropyrimi 91.3 5.9 0.00013 38.6 14.0 77 274-351 110-198 (299)
325 cd02072 Glm_B12_BD B12 binding 91.3 7.8 0.00017 33.5 13.1 101 150-299 16-117 (128)
326 PTZ00170 D-ribulose-5-phosphat 91.3 0.63 1.4E-05 43.7 6.9 73 274-351 16-93 (228)
327 PLN02925 4-hydroxy-3-methylbut 91.3 12 0.00025 41.1 17.0 165 144-318 106-295 (733)
328 PRK03170 dihydrodipicolinate s 91.3 5.6 0.00012 38.4 13.7 98 207-319 28-126 (292)
329 cd00003 PNPsynthase Pyridoxine 91.2 1.4 3E-05 41.9 9.0 99 183-297 110-211 (234)
330 PF13714 PEP_mutase: Phosphoen 91.2 1.8 3.9E-05 41.1 10.0 135 207-350 22-172 (238)
331 cd04731 HisF The cyclase subun 91.2 13 0.00028 34.8 18.1 183 147-352 26-222 (243)
332 PRK04165 acetyl-CoA decarbonyl 91.2 14 0.0003 38.6 17.1 119 145-297 102-232 (450)
333 cd06556 ICL_KPHMT Members of t 91.2 4 8.7E-05 38.9 12.2 128 207-350 25-173 (240)
334 TIGR03572 WbuZ glycosyl amidat 91.0 13 0.00028 34.5 18.1 185 148-356 30-230 (232)
335 TIGR01574 miaB-methiolase tRNA 91.0 15 0.00032 37.8 17.2 145 143-295 172-332 (438)
336 PRK14328 (dimethylallyl)adenos 91.0 14 0.00031 37.9 17.1 143 143-293 174-330 (439)
337 PRK09058 coproporphyrinogen II 91.0 5.7 0.00012 41.0 14.2 107 183-296 134-249 (449)
338 TIGR01304 IMP_DH_rel_2 IMP deh 90.9 1.8 3.8E-05 43.9 10.1 89 242-351 119-214 (369)
339 PRK13758 anaerobic sulfatase-m 90.9 14 0.00031 36.6 16.6 162 144-317 38-223 (370)
340 TIGR01037 pyrD_sub1_fam dihydr 90.9 5 0.00011 38.8 13.0 92 252-353 87-189 (300)
341 cd04722 TIM_phosphate_binding 90.8 10 0.00022 32.8 17.6 172 148-352 12-198 (200)
342 PRK09234 fbiC FO synthase; Rev 90.7 23 0.0005 39.8 19.4 199 141-353 98-336 (843)
343 KOG0256 1-aminocyclopropane-1- 90.7 2 4.3E-05 44.0 10.1 158 146-315 123-288 (471)
344 TIGR03700 mena_SCO4494 putativ 90.7 0.99 2.2E-05 45.0 8.1 79 273-351 78-165 (351)
345 PRK14337 (dimethylallyl)adenos 90.6 14 0.00031 38.0 16.7 146 143-296 175-335 (446)
346 PRK07259 dihydroorotate dehydr 90.6 17 0.00037 35.1 18.0 183 152-353 27-263 (301)
347 PRK14339 (dimethylallyl)adenos 90.5 22 0.00049 36.4 20.1 143 144-294 155-314 (420)
348 PRK14326 (dimethylallyl)adenos 90.5 13 0.00028 39.1 16.4 142 143-293 184-340 (502)
349 cd04730 NPD_like 2-Nitropropan 90.5 14 0.00031 34.0 15.6 113 205-356 71-188 (236)
350 PF03932 CutC: CutC family; I 90.5 8.8 0.00019 35.7 13.5 133 199-351 5-145 (201)
351 PRK09057 coproporphyrinogen II 90.5 15 0.00032 37.1 16.3 95 195-297 91-190 (380)
352 PLN02623 pyruvate kinase 90.4 23 0.00049 38.1 18.1 155 145-318 276-439 (581)
353 cd02801 DUS_like_FMN Dihydrour 90.4 7.3 0.00016 35.8 13.1 135 206-353 72-213 (231)
354 COG1082 IolE Sugar phosphate i 90.4 8.1 0.00018 36.1 13.7 169 153-334 20-210 (274)
355 cd04747 OYE_like_5_FMN Old yel 90.4 11 0.00025 37.9 15.3 141 207-351 150-326 (361)
356 PRK00366 ispG 4-hydroxy-3-meth 90.3 16 0.00034 37.0 15.9 99 145-263 39-138 (360)
357 TIGR00683 nanA N-acetylneurami 90.3 6.6 0.00014 38.1 13.2 17 277-293 83-99 (290)
358 TIGR03249 KdgD 5-dehydro-4-deo 90.2 2.2 4.7E-05 41.5 9.8 79 272-350 21-103 (296)
359 PRK08898 coproporphyrinogen II 90.2 7.9 0.00017 39.2 14.2 96 193-296 107-207 (394)
360 cd00950 DHDPS Dihydrodipicolin 90.1 2.1 4.5E-05 41.1 9.5 81 272-352 16-101 (284)
361 TIGR00674 dapA dihydrodipicoli 90.1 6.6 0.00014 37.8 13.0 98 207-319 25-123 (285)
362 PRK07360 FO synthase subunit 2 90.1 1.2 2.7E-05 44.8 8.2 81 273-353 90-180 (371)
363 TIGR02319 CPEP_Pphonmut carbox 90.1 5.3 0.00011 39.3 12.3 133 208-350 30-182 (294)
364 PRK06354 pyruvate kinase; Prov 90.1 25 0.00053 38.0 18.3 158 144-319 175-341 (590)
365 PRK09997 hydroxypyruvate isome 90.1 9.5 0.00021 35.8 13.8 166 150-332 17-209 (258)
366 TIGR00683 nanA N-acetylneurami 90.1 2.3 5.1E-05 41.3 9.9 81 272-352 16-102 (290)
367 PF00809 Pterin_bind: Pterin b 90.0 3.4 7.4E-05 38.2 10.5 157 142-317 13-190 (210)
368 PRK09196 fructose-1,6-bisphosp 90.0 4.5 9.9E-05 40.7 11.9 101 243-355 5-109 (347)
369 cd04727 pdxS PdxS is a subunit 89.9 5.1 0.00011 39.1 11.9 64 280-354 77-140 (283)
370 PF03740 PdxJ: Pyridoxal phosp 89.9 1.6 3.4E-05 41.7 8.2 64 193-259 123-189 (239)
371 PRK12737 gatY tagatose-bisphos 89.9 4.7 0.0001 39.4 11.8 95 243-350 5-101 (284)
372 PF04131 NanE: Putative N-acet 89.9 1.4 2.9E-05 40.7 7.5 69 281-358 55-123 (192)
373 cd00381 IMPDH IMPDH: The catal 89.9 7.7 0.00017 38.4 13.5 129 148-296 93-225 (325)
374 TIGR01430 aden_deam adenosine 89.9 13 0.00028 36.2 15.1 133 206-351 77-214 (324)
375 PRK05581 ribulose-phosphate 3- 89.8 15 0.00033 33.4 20.5 173 145-351 13-196 (220)
376 PTZ00066 pyruvate kinase; Prov 89.7 24 0.00052 37.4 17.5 192 144-350 206-415 (513)
377 PRK08255 salicylyl-CoA 5-hydro 89.7 10 0.00023 41.8 15.6 136 208-351 558-715 (765)
378 TIGR00612 ispG_gcpE 1-hydroxy- 89.7 24 0.00052 35.4 17.3 98 145-263 31-129 (346)
379 cd02940 DHPD_FMN Dihydropyrimi 89.6 6.1 0.00013 38.5 12.4 131 211-356 123-284 (299)
380 PRK03620 5-dehydro-4-deoxygluc 89.6 2.6 5.7E-05 41.2 9.9 80 272-351 23-106 (303)
381 PRK02048 4-hydroxy-3-methylbut 89.6 29 0.00063 37.4 18.0 178 144-331 37-239 (611)
382 TIGR00674 dapA dihydrodipicoli 89.5 2.7 5.9E-05 40.5 9.8 82 272-353 14-100 (285)
383 PRK12738 kbaY tagatose-bisphos 89.5 5.6 0.00012 38.9 11.9 94 244-350 6-101 (286)
384 PTZ00372 endonuclease 4-like p 89.4 28 0.00061 35.9 17.5 120 206-333 223-351 (413)
385 PF01702 TGT: Queuine tRNA-rib 89.4 12 0.00026 35.1 13.9 80 272-355 63-143 (238)
386 PRK04147 N-acetylneuraminate l 89.4 2.6 5.7E-05 40.8 9.7 82 272-353 19-106 (293)
387 cd02931 ER_like_FMN Enoate red 89.4 21 0.00045 36.2 16.4 139 207-352 156-334 (382)
388 COG0854 PdxJ Pyridoxal phospha 89.4 0.86 1.9E-05 42.9 5.9 124 185-317 113-240 (243)
389 PRK06582 coproporphyrinogen II 89.3 15 0.00033 37.3 15.5 94 195-297 98-197 (390)
390 TIGR01521 FruBisAldo_II_B fruc 89.3 6.1 0.00013 39.7 12.3 99 244-354 4-106 (347)
391 TIGR02321 Pphn_pyruv_hyd phosp 89.3 7.7 0.00017 38.0 12.8 133 208-350 29-183 (290)
392 PLN02417 dihydrodipicolinate s 89.3 2.9 6.2E-05 40.4 9.8 81 272-352 17-102 (280)
393 PRK08185 hypothetical protein; 89.2 4.1 8.8E-05 39.8 10.8 92 245-349 2-94 (283)
394 PRK13813 orotidine 5'-phosphat 89.2 8.8 0.00019 35.2 12.5 170 145-351 13-190 (215)
395 PRK14329 (dimethylallyl)adenos 89.1 19 0.00042 37.4 16.3 144 143-294 195-357 (467)
396 PF04551 GcpE: GcpE protein; 89.1 7.3 0.00016 39.3 12.6 141 145-303 28-188 (359)
397 PRK04147 N-acetylneuraminate l 89.1 9.2 0.0002 37.0 13.2 19 276-294 85-103 (293)
398 TIGR01858 tag_bisphos_ald clas 89.1 6.2 0.00013 38.6 11.9 94 244-350 4-99 (282)
399 COG0635 HemN Coproporphyrinoge 89.0 11 0.00024 38.7 14.3 85 205-296 138-223 (416)
400 PRK07107 inosine 5-monophospha 89.0 11 0.00024 39.8 14.5 141 142-299 235-383 (502)
401 PRK05835 fructose-bisphosphate 89.0 6.4 0.00014 39.0 12.0 94 244-349 5-100 (307)
402 PRK06096 molybdenum transport 89.0 22 0.00047 34.8 15.6 129 203-355 135-266 (284)
403 PRK05826 pyruvate kinase; Prov 88.9 28 0.00061 36.4 17.3 156 145-319 171-336 (465)
404 PRK09195 gatY tagatose-bisphos 88.9 5.5 0.00012 38.9 11.4 95 243-350 5-101 (284)
405 TIGR02313 HpaI-NOT-DapA 2,4-di 88.9 3.1 6.6E-05 40.5 9.7 81 272-352 16-101 (294)
406 TIGR01431 adm_rel adenosine de 88.9 19 0.0004 37.8 16.0 143 207-355 203-357 (479)
407 cd00288 Pyruvate_Kinase Pyruva 88.8 31 0.00067 36.2 17.6 157 145-319 172-336 (480)
408 cd02801 DUS_like_FMN Dihydrour 88.8 4.1 8.9E-05 37.4 10.1 46 275-320 65-123 (231)
409 TIGR03581 EF_0839 conserved hy 88.8 5.6 0.00012 37.5 10.7 86 210-317 144-236 (236)
410 cd02911 arch_FMN Archeal FMN-b 88.7 13 0.00028 35.0 13.6 99 244-354 61-173 (233)
411 PRK06801 hypothetical protein; 88.7 7 0.00015 38.2 12.0 95 243-350 5-101 (286)
412 COG0274 DeoC Deoxyribose-phosp 88.7 5.4 0.00012 37.8 10.7 94 262-357 63-164 (228)
413 TIGR00167 cbbA ketose-bisphosp 88.7 5.7 0.00012 38.9 11.4 96 243-350 5-104 (288)
414 cd00951 KDGDH 5-dehydro-4-deox 88.7 11 0.00025 36.4 13.5 43 277-319 81-124 (289)
415 PRK14333 (dimethylallyl)adenos 88.6 19 0.0004 37.2 15.8 144 144-295 176-340 (448)
416 PRK00115 hemE uroporphyrinogen 88.6 9.9 0.00022 37.7 13.3 147 145-317 183-343 (346)
417 TIGR01302 IMP_dehydrog inosine 88.6 2 4.4E-05 44.4 8.7 71 278-354 224-294 (450)
418 PRK08444 hypothetical protein; 88.5 1.4 3.1E-05 44.2 7.3 79 273-353 79-168 (353)
419 TIGR01064 pyruv_kin pyruvate k 88.5 35 0.00075 35.8 18.7 157 145-319 169-334 (473)
420 PRK04180 pyridoxal biosynthesi 88.5 2.3 5E-05 41.6 8.4 121 203-353 26-148 (293)
421 cd00408 DHDPS-like Dihydrodipi 88.5 4.5 9.7E-05 38.6 10.4 81 272-352 13-98 (281)
422 PRK12290 thiE thiamine-phospha 88.4 4.4 9.5E-05 42.0 10.8 170 144-356 146-330 (437)
423 PLN02433 uroporphyrinogen deca 88.4 3.2 6.9E-05 41.2 9.7 70 278-351 180-258 (345)
424 PRK13210 putative L-xylulose 5 88.3 21 0.00045 33.7 14.9 18 279-296 96-113 (284)
425 cd00945 Aldolase_Class_I Class 88.1 2.6 5.7E-05 37.2 8.1 72 274-356 10-88 (201)
426 PLN02826 dihydroorotate dehydr 88.1 34 0.00074 35.2 18.5 80 274-358 273-375 (409)
427 TIGR03249 KdgD 5-dehydro-4-deo 88.1 19 0.00041 35.0 14.6 98 207-320 32-130 (296)
428 TIGR03849 arch_ComA phosphosul 88.1 3.9 8.5E-05 39.0 9.5 95 207-314 77-182 (237)
429 TIGR00736 nifR3_rel_arch TIM-b 88.1 24 0.00053 33.4 16.8 101 241-353 120-220 (231)
430 cd00452 KDPG_aldolase KDPG and 88.1 1.7 3.8E-05 39.3 7.0 69 274-352 13-82 (190)
431 cd00381 IMPDH IMPDH: The catal 88.0 3.4 7.3E-05 41.0 9.5 69 278-352 94-162 (325)
432 PRK07094 biotin synthase; Prov 88.0 15 0.00032 35.9 13.9 75 274-353 70-146 (323)
433 TIGR01163 rpe ribulose-phospha 88.0 18 0.00038 32.6 13.6 109 205-350 15-130 (210)
434 PRK03620 5-dehydro-4-deoxygluc 87.9 12 0.00027 36.5 13.3 98 207-320 34-132 (303)
435 PRK05567 inosine 5'-monophosph 87.9 2.1 4.6E-05 44.7 8.4 69 279-353 229-297 (486)
436 PRK07807 inosine 5-monophospha 87.9 15 0.00033 38.5 14.6 132 148-298 226-360 (479)
437 cd01299 Met_dep_hydrolase_A Me 87.8 3.5 7.6E-05 40.1 9.4 71 274-351 117-198 (342)
438 PRK13399 fructose-1,6-bisphosp 87.8 6.2 0.00013 39.7 11.2 101 243-355 5-109 (347)
439 cd00954 NAL N-Acetylneuraminic 87.7 4.1 8.9E-05 39.4 9.7 81 272-352 16-102 (288)
440 PF07555 NAGidase: beta-N-acet 87.7 3.5 7.6E-05 40.7 9.3 103 218-320 31-146 (306)
441 PRK09240 thiH thiamine biosynt 87.7 4 8.6E-05 41.1 9.9 76 274-354 104-181 (371)
442 PLN02495 oxidoreductase, actin 87.7 12 0.00026 38.2 13.3 79 274-353 124-214 (385)
443 TIGR00693 thiE thiamine-phosph 87.6 6.3 0.00014 35.4 10.3 106 205-353 17-123 (196)
444 COG0469 PykF Pyruvate kinase [ 87.4 16 0.00034 38.4 14.2 158 144-319 172-338 (477)
445 cd00947 TBP_aldolase_IIB Tagat 87.4 7.4 0.00016 37.9 11.2 93 245-350 2-96 (276)
446 PRK07709 fructose-bisphosphate 87.3 9.3 0.0002 37.4 11.9 95 243-349 5-103 (285)
447 PRK06252 methylcobalamin:coenz 87.3 3.8 8.2E-05 40.2 9.4 71 278-351 181-258 (339)
448 PRK08318 dihydropyrimidine deh 87.2 11 0.00024 38.4 13.0 76 275-351 111-198 (420)
449 PRK06247 pyruvate kinase; Prov 87.2 42 0.00092 35.3 17.3 155 145-319 171-332 (476)
450 TIGR00542 hxl6Piso_put hexulos 87.1 13 0.00028 35.3 12.7 112 208-332 101-213 (279)
451 PRK08649 inosine 5-monophospha 87.1 6.6 0.00014 39.8 11.1 137 146-297 139-285 (368)
452 PRK12857 fructose-1,6-bisphosp 87.1 9.2 0.0002 37.4 11.7 95 243-350 5-101 (284)
453 COG0191 Fba Fructose/tagatose 87.0 7 0.00015 38.3 10.7 96 245-353 7-107 (286)
454 TIGR00433 bioB biotin syntheta 87.0 2.9 6.3E-05 40.1 8.2 32 276-310 97-128 (296)
455 PRK14041 oxaloacetate decarbox 86.8 3.4 7.4E-05 43.1 9.1 84 272-355 20-117 (467)
456 cd00740 MeTr MeTr subgroup of 86.8 30 0.00065 33.1 17.4 183 145-350 23-235 (252)
457 PRK08610 fructose-bisphosphate 86.8 9.6 0.00021 37.3 11.7 94 244-349 6-103 (286)
458 COG1902 NemA NADH:flavin oxido 86.8 21 0.00045 36.2 14.4 141 207-352 155-317 (363)
459 PRK01060 endonuclease IV; Prov 86.7 16 0.00034 34.6 13.1 22 237-258 84-105 (281)
460 TIGR02321 Pphn_pyruv_hyd phosp 86.7 15 0.00033 35.9 13.1 155 154-316 28-203 (290)
461 TIGR01305 GMP_reduct_1 guanosi 86.7 22 0.00048 35.7 14.2 130 145-297 104-241 (343)
462 PLN02461 Probable pyruvate kin 86.6 46 0.00099 35.3 17.3 160 144-319 190-356 (511)
463 PRK10550 tRNA-dihydrouridine s 86.6 7.9 0.00017 38.2 11.1 78 275-352 73-167 (312)
464 PRK00112 tgt queuine tRNA-ribo 86.6 11 0.00024 38.1 12.3 83 269-356 187-271 (366)
465 TIGR01578 MiaB-like-B MiaB-lik 86.5 28 0.00061 35.6 15.5 142 144-295 161-318 (420)
466 PLN02417 dihydrodipicolinate s 86.4 19 0.00041 34.7 13.5 40 246-290 87-126 (280)
467 PRK02227 hypothetical protein; 86.3 19 0.00042 34.4 13.0 149 143-317 62-235 (238)
468 cd00953 KDG_aldolase KDG (2-ke 86.2 17 0.00036 35.1 13.0 102 205-327 24-127 (279)
469 cd03307 Mta_CmuA_like MtaA_Cmu 86.2 4.4 9.5E-05 39.7 9.1 70 278-351 172-249 (326)
470 PRK07896 nicotinate-nucleotide 86.2 16 0.00034 35.9 12.7 90 183-300 187-277 (289)
471 PF04476 DUF556: Protein of un 86.1 11 0.00025 35.8 11.3 154 143-315 62-234 (235)
472 PRK13753 dihydropteroate synth 86.1 6.1 0.00013 38.6 9.8 76 270-352 17-102 (279)
473 COG0329 DapA Dihydrodipicolina 86.0 5.4 0.00012 39.0 9.6 80 272-351 20-104 (299)
474 PRK06806 fructose-bisphosphate 85.9 13 0.00029 36.1 12.2 96 243-351 5-102 (281)
475 TIGR03234 OH-pyruv-isom hydrox 85.9 11 0.00023 35.2 11.2 76 205-297 18-104 (254)
476 cd04733 OYE_like_2_FMN Old yel 85.8 14 0.0003 36.5 12.6 116 238-354 78-257 (338)
477 TIGR01037 pyrD_sub1_fam dihydr 85.8 35 0.00076 32.9 17.4 98 242-353 143-263 (300)
478 cd06810 PLPDE_III_ODC_DapDC_li 85.7 17 0.00037 35.8 13.2 135 151-316 38-189 (368)
479 PRK05927 hypothetical protein; 85.7 2.4 5.3E-05 42.5 7.1 78 273-352 75-163 (350)
480 PF02679 ComA: (2R)-phospho-3- 85.6 3.6 7.9E-05 39.4 7.9 124 207-348 90-242 (244)
481 PRK08091 ribulose-phosphate 3- 85.6 33 0.00072 32.5 14.4 143 149-317 79-225 (228)
482 PRK06843 inosine 5-monophospha 85.5 22 0.00048 36.5 14.0 132 148-298 152-286 (404)
483 PRK09997 hydroxypyruvate isome 85.4 21 0.00044 33.6 13.0 107 206-331 20-147 (258)
484 PF04273 DUF442: Putative phos 85.2 5.4 0.00012 33.4 7.9 76 249-331 21-96 (110)
485 PRK00748 1-(5-phosphoribosyl)- 85.1 31 0.00067 31.8 18.2 179 148-350 30-217 (233)
486 TIGR00737 nifR3_yhdG putative 85.1 8.4 0.00018 37.8 10.5 79 274-353 72-167 (319)
487 PRK05096 guanosine 5'-monophos 85.1 43 0.00092 33.8 15.3 132 145-299 105-244 (346)
488 PRK11613 folP dihydropteroate 85.1 8.7 0.00019 37.5 10.4 76 270-351 30-115 (282)
489 PRK00115 hemE uroporphyrinogen 85.0 3 6.4E-05 41.4 7.3 69 277-350 186-264 (346)
490 TIGR01464 hemE uroporphyrinoge 84.9 3.2 7E-05 40.8 7.6 68 278-350 181-258 (338)
491 smart00518 AP2Ec AP endonuclea 84.9 11 0.00024 35.4 11.0 22 237-258 79-100 (273)
492 PRK07998 gatY putative fructos 84.9 14 0.00029 36.2 11.6 94 244-350 6-101 (283)
493 PF09587 PGA_cap: Bacterial ca 84.7 8.4 0.00018 36.3 10.0 158 130-295 44-221 (250)
494 PTZ00124 adenosine deaminase; 84.7 48 0.001 33.5 16.3 136 208-355 113-255 (362)
495 PRK02506 dihydroorotate dehydr 84.6 26 0.00057 34.4 13.7 58 274-332 102-168 (310)
496 cd04735 OYE_like_4_FMN Old yel 84.6 28 0.0006 34.8 14.1 116 238-354 74-256 (353)
497 PF00224 PK: Pyruvate kinase, 84.4 21 0.00046 35.7 13.1 158 145-318 174-337 (348)
498 TIGR03699 mena_SCO4550 menaqui 84.4 4.6 0.0001 39.9 8.4 78 273-352 71-159 (340)
499 COG0042 tRNA-dihydrouridine sy 84.3 7 0.00015 38.8 9.5 78 274-351 76-170 (323)
500 cd01714 ETF_beta The electron 84.2 23 0.0005 32.5 12.4 100 243-354 40-143 (202)
No 1
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=100.00 E-value=4.5e-60 Score=465.60 Aligned_cols=252 Identities=81% Similarity=1.218 Sum_probs=242.1
Q ss_pred ccccCccchhhhhhhhhcCCCCccEEEeCCCcccCCCCCCCCCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcCCCCCHH
Q 018252 104 NSNCNDKDIRDITNKFLKGIPRFVKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADAR 183 (359)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~p~~V~I~D~TLRDG~Q~~~~~~~~~~k~~ia~~L~~aGv~~IEvG~fvspk~vPq~~D~~ 183 (359)
++..+....+.+++++..+||++|+|+|||||||+|+++..|++++|++|++.|+++||+.||+|+|++||++|||+|.+
T Consensus 24 ~~~~~~~~~~~~~~~~~~~m~~~V~I~DtTlRDG~Q~~g~~~s~e~Ki~ia~~L~~~GV~~IEvGs~vspk~vPqmad~~ 103 (347)
T PLN02746 24 SSSSNEVGVAHMHNKLLKGLPKFVKIVEVGPRDGLQNEKNIVPTSVKVELIQRLVSSGLPVVEATSFVSPKWVPQLADAK 103 (347)
T ss_pred ccccccccccccccchhhcCCCceEEEECCCCccCcCCCCCCCHHHHHHHHHHHHHcCCCEEEECCCcCcccccccccHH
Confidence 34444556789999999899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhcCCCeEEEEeCChHhHHHHHHcCCCEEEEecCCchHHHHhhhcCCHHHHHHHHHHHHHHHHhCCCcEEEEEe
Q 018252 184 DVMEAVRDLEGARLPVLTPNLKGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVS 263 (359)
Q Consensus 184 ev~~~l~~~~~~~l~~l~~n~~gie~a~~aGv~~V~i~~s~S~~~~~~n~~~t~~e~l~~i~~~i~~Ak~~G~~V~~~is 263 (359)
++++.++..+++++.++++|.+|+++|+++|++.|++++|+|+.|.+.|+|+|++|+++++.+++++||++|++|+++|+
T Consensus 104 ev~~~i~~~~~~~~~~l~~n~~die~A~~~g~~~v~i~~s~Sd~h~~~n~~~t~~e~l~~~~~~v~~Ak~~Gl~v~~~is 183 (347)
T PLN02746 104 DVMAAVRNLEGARFPVLTPNLKGFEAAIAAGAKEVAVFASASESFSKSNINCSIEESLVRYREVALAAKKHSIPVRGYVS 183 (347)
T ss_pred HHHHHHHhccCCceeEEcCCHHHHHHHHHcCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEEEE
Confidence 99999988788899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeecCCCCCCCCHHHHHHHHHHHHHCCcCEEEEcCCCCCCcHHHHHHHHHHHHHhCCCceEEEEeCCCCCcHHHHHHHHH
Q 018252 264 CVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISL 343 (359)
Q Consensus 264 ~~fg~~~~~r~~~e~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~lv~~l~~~~p~~~L~~H~HNd~GLAlANalaAv 343 (359)
++|+||++++++++++.++++++.++|+++|+|+||+|+++|.+++++++.+++.+|..+|++|+|||+|||+||+++|+
T Consensus 184 ~~fg~p~~~r~~~~~l~~~~~~~~~~Gad~I~l~DT~G~a~P~~v~~lv~~l~~~~~~~~i~~H~Hnd~GlA~AN~lAA~ 263 (347)
T PLN02746 184 CVVGCPIEGPVPPSKVAYVAKELYDMGCYEISLGDTIGVGTPGTVVPMLEAVMAVVPVDKLAVHFHDTYGQALANILVSL 263 (347)
T ss_pred eeecCCccCCCCHHHHHHHHHHHHHcCCCEEEecCCcCCcCHHHHHHHHHHHHHhCCCCeEEEEECCCCChHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999877899999999999999999999
Q ss_pred HcCCCEEeceee
Q 018252 344 QVSPMHAKPCFT 355 (359)
Q Consensus 344 ~AGa~~ID~tl~ 355 (359)
++||++||+|+.
T Consensus 264 ~aGa~~vd~sv~ 275 (347)
T PLN02746 264 QMGISTVDSSVA 275 (347)
T ss_pred HhCCCEEEEecc
Confidence 999999999986
No 2
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=100.00 E-value=1.4e-56 Score=432.21 Aligned_cols=233 Identities=61% Similarity=0.955 Sum_probs=226.9
Q ss_pred CCCccEEEeCCCcccCCCCCCCCCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcCCCCCHHHHHHHhhhcCCCeEEEEeC
Q 018252 123 IPRFVKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPVLTP 202 (359)
Q Consensus 123 ~p~~V~I~D~TLRDG~Q~~~~~~~~~~k~~ia~~L~~aGv~~IEvG~fvspk~vPq~~D~~ev~~~l~~~~~~~l~~l~~ 202 (359)
||++|+|+|||||||+|+++..|++++|++|++.|+++||+.||+|+|++||++|++.|.++++..+.+.+++++.+|++
T Consensus 1 m~~~v~I~D~TlRDG~Q~~~~~~s~e~k~~ia~~L~~~Gv~~IEvgsf~~p~~~p~~~d~~e~~~~l~~~~~~~~~~l~~ 80 (287)
T PRK05692 1 LPKRVKIVEVGPRDGLQNEKRFIPTADKIALIDRLSAAGLSYIEVASFVSPKWVPQMADAAEVMAGIQRRPGVTYAALTP 80 (287)
T ss_pred CCCceEEEECCCCccccCcCCCcCHHHHHHHHHHHHHcCCCEEEeCCCcCcccccccccHHHHHHhhhccCCCeEEEEec
Confidence 47889999999999999999999999999999999999999999999999999999999988888887778899999999
Q ss_pred ChHhHHHHHHcCCCEEEEecCCchHHHHhhhcCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHH
Q 018252 203 NLKGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYV 282 (359)
Q Consensus 203 n~~gie~a~~aGv~~V~i~~s~S~~~~~~n~~~t~~e~l~~i~~~i~~Ak~~G~~V~~~is~~fg~~~~~r~~~e~l~~~ 282 (359)
|.+|+++|+++|++.|++++++|+.|.+.|+|++++++++++.+++++||++|+.|+++|+++|+||++++++++++.++
T Consensus 81 ~~~~ie~A~~~g~~~v~i~~~~s~~~~~~n~~~~~~e~l~~~~~~v~~ak~~g~~v~~~i~~~~~~~~~~~~~~~~~~~~ 160 (287)
T PRK05692 81 NLKGLEAALAAGADEVAVFASASEAFSQKNINCSIAESLERFEPVAEAAKQAGVRVRGYVSCVLGCPYEGEVPPEAVADV 160 (287)
T ss_pred CHHHHHHHHHcCCCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEEEEEEEecCCCCCCCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHCCcCEEEEcCCCCCCcHHHHHHHHHHHHHhCCCceEEEEeCCCCCcHHHHHHHHHHcCCCEEeceee
Q 018252 283 AKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQVSPMHAKPCFT 355 (359)
Q Consensus 283 a~~l~~~Gad~I~L~DT~G~~~P~~v~~lv~~l~~~~p~~~L~~H~HNd~GLAlANalaAv~AGa~~ID~tl~ 355 (359)
++++.++|+++|+|+||+|.++|.+++++++.+++++|+++|++|+|||+|||+||+++|+++||++||+|+.
T Consensus 161 ~~~~~~~G~d~i~l~DT~G~~~P~~v~~lv~~l~~~~~~~~i~~H~Hn~~Gla~AN~laA~~aG~~~id~s~~ 233 (287)
T PRK05692 161 AERLFALGCYEISLGDTIGVGTPGQVRAVLEAVLAEFPAERLAGHFHDTYGQALANIYASLEEGITVFDASVG 233 (287)
T ss_pred HHHHHHcCCcEEEeccccCccCHHHHHHHHHHHHHhCCCCeEEEEecCCCCcHHHHHHHHHHhCCCEEEEEcc
Confidence 9999999999999999999999999999999999999988999999999999999999999999999999986
No 3
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=100.00 E-value=8.6e-55 Score=417.31 Aligned_cols=227 Identities=56% Similarity=0.874 Sum_probs=221.7
Q ss_pred EEeCCCcccCCCCCCCCCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcCCCCCHHHHHHHhhhcCCCeEEEEeCChHhHH
Q 018252 129 IVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPVLTPNLKGFE 208 (359)
Q Consensus 129 I~D~TLRDG~Q~~~~~~~~~~k~~ia~~L~~aGv~~IEvG~fvspk~vPq~~D~~ev~~~l~~~~~~~l~~l~~n~~gie 208 (359)
|+|||||||+|+++..|++++|++|++.|+++||+.||+|+|++|+++|+++|.+++++.+...+++++.+|+++.+|++
T Consensus 1 i~D~TlRDG~Q~~~~~~s~e~K~~i~~~L~~~Gv~~IEvGs~~~~~~~p~~~d~~~~~~~l~~~~~~~~~~~~~~~~dv~ 80 (274)
T cd07938 1 IVEVGPRDGLQNEKTFIPTEDKIELIDALSAAGLRRIEVTSFVSPKWVPQMADAEEVLAGLPRRPGVRYSALVPNLRGAE 80 (274)
T ss_pred CeeCCCCCCCcCCCCCcCHHHHHHHHHHHHHcCCCEEEeCCCCCcccccccCCHHHHHhhcccCCCCEEEEECCCHHHHH
Confidence 68999999999999999999999999999999999999999999999999999998888887777899999999999999
Q ss_pred HHHHcCCCEEEEecCCchHHHHhhhcCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHH
Q 018252 209 AAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHD 288 (359)
Q Consensus 209 ~a~~aGv~~V~i~~s~S~~~~~~n~~~t~~e~l~~i~~~i~~Ak~~G~~V~~~is~~fg~~~~~r~~~e~l~~~a~~l~~ 288 (359)
+|+++|++.|+++.++|+.|.+.|+|+++++.++++.+.+++||++|++++++++++|+||++++++++++.++++.+.+
T Consensus 81 ~A~~~g~~~i~i~~~~Sd~~~~~~~~~s~~~~~~~~~~~v~~ak~~G~~v~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~ 160 (274)
T cd07938 81 RALAAGVDEVAVFVSASETFSQKNINCSIAESLERFEPVAELAKAAGLRVRGYVSTAFGCPYEGEVPPERVAEVAERLLD 160 (274)
T ss_pred HHHHcCcCEEEEEEecCHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeEecCCCCCCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcCEEEEcCCCCCCcHHHHHHHHHHHHHhCCCceEEEEeCCCCCcHHHHHHHHHHcCCCEEeceee
Q 018252 289 MGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQVSPMHAKPCFT 355 (359)
Q Consensus 289 ~Gad~I~L~DT~G~~~P~~v~~lv~~l~~~~p~~~L~~H~HNd~GLAlANalaAv~AGa~~ID~tl~ 355 (359)
+|+++|+|+||+|.++|.+++++++.+++++|+++|++|+|||+|||+||+++|+++||++||+|+.
T Consensus 161 ~Ga~~i~l~DT~G~~~P~~v~~lv~~l~~~~~~~~i~~H~Hnd~GlA~AN~laA~~aGa~~id~t~~ 227 (274)
T cd07938 161 LGCDEISLGDTIGVATPAQVRRLLEAVLERFPDEKLALHFHDTRGQALANILAALEAGVRRFDSSVG 227 (274)
T ss_pred cCCCEEEECCCCCccCHHHHHHHHHHHHHHCCCCeEEEEECCCCChHHHHHHHHHHhCCCEEEEecc
Confidence 9999999999999999999999999999999989999999999999999999999999999999986
No 4
>KOG2368 consensus Hydroxymethylglutaryl-CoA lyase [Energy production and conversion; Amino acid transport and metabolism]
Probab=100.00 E-value=2.1e-55 Score=402.13 Aligned_cols=245 Identities=66% Similarity=0.999 Sum_probs=239.9
Q ss_pred chhhhhhhhhcCCCCccEEEeCCCcccCCCCCCCCCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcCCCCCHHHHHHHhh
Q 018252 111 DIRDITNKFLKGIPRFVKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVR 190 (359)
Q Consensus 111 ~~~~~~~~~~~~~p~~V~I~D~TLRDG~Q~~~~~~~~~~k~~ia~~L~~aGv~~IEvG~fvspk~vPq~~D~~ev~~~l~ 190 (359)
..|.+.++.+...|++|+|+++++|||+|+++..+|++.|++++++|.++|+..||.++|++|||||||+|..||+..++
T Consensus 3 ~~~~~s~~a~~t~~~~vkiVEVGpRDGLQnEk~~vpt~vKveLI~~Lse~Gl~~vEtTSFVSpKWVPQl~D~~ev~k~i~ 82 (316)
T KOG2368|consen 3 PNRLLSNRAYSTAPKRVKIVEVGPRDGLQNEKNIVPTEVKVELIDRLSECGLQVVETTSFVSPKWVPQLADHNEVMKGIR 82 (316)
T ss_pred hhHHHHhhhhhcccceeEEEEecCcccccccCccCCchHHHHHHHHHHHcCCceeeeecccCccccccccchHHHHHhhh
Confidence 35777888889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCeEEEEeCChHhHHHHHHcCCCEEEEecCCchHHHHhhhcCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCC
Q 018252 191 DLEGARLPVLTPNLKGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPV 270 (359)
Q Consensus 191 ~~~~~~l~~l~~n~~gie~a~~aGv~~V~i~~s~S~~~~~~n~~~t~~e~l~~i~~~i~~Ak~~G~~V~~~is~~fg~~~ 270 (359)
+.+++++.+|+||.+|++.|+++|+.+|.+|-++|+.|..+|+||+++|++.++.++++.|+++++.||+|++|+.|||+
T Consensus 83 ~~~Gv~yPVLtPNlkGf~~AvaaGa~EvavFgaASe~FslkNiNctiees~~rf~~v~kaA~~~ni~vRGYVScvvGCPy 162 (316)
T KOG2368|consen 83 KFPGVSYPVLTPNLKGFEAAVAAGAEEVAVFGAASEAFSLKNINCTIEESLKRFMEVLKAAQEHNIRVRGYVSCVVGCPY 162 (316)
T ss_pred cCCCccccccCcchhhHHHHHhcCceeEEeeehhhhhhhhccCCccHHHHHHHHHHHHHHHHHcCCccceEEEEEecCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHCCcCEEEEcCCCCCCcHHHHHHHHHHHHHhCCCceEEEEeCCCCCcHHHHHHHHHHcCCCEE
Q 018252 271 EGAIPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQVSPMHA 350 (359)
Q Consensus 271 ~~r~~~e~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~lv~~l~~~~p~~~L~~H~HNd~GLAlANalaAv~AGa~~I 350 (359)
++...|+.+.++++++.++||++|+|.||+|++||..+.+++.++.+.+|...|.+|||||||+|+||+|.+++.|++.+
T Consensus 163 eG~v~P~kVa~V~k~ly~mGCyEiSLGDTIGvGTpgtm~~ML~~Vmk~vPa~~LAVH~HDTYGQALaNiL~slqmGi~vv 242 (316)
T KOG2368|consen 163 EGAVQPSKVAEVVKKLYEMGCYEISLGDTIGVGTPGTMKRMLDAVMKVVPAEKLAVHCHDTYGQALANILVSLQMGIRVV 242 (316)
T ss_pred cCCcCHHHHHHHHHHHHhCCcEEEecccccccCCchhHHHHHHHHHHhCCHHHhhhhhhhhHHHHHHHHHHHHHhcceeh
Confidence 99999999999999999999999999999999999999999999999999889999999999999999999999999999
Q ss_pred eceee
Q 018252 351 KPCFT 355 (359)
Q Consensus 351 D~tl~ 355 (359)
|.++.
T Consensus 243 DSsva 247 (316)
T KOG2368|consen 243 DSSVA 247 (316)
T ss_pred hhhcc
Confidence 99885
No 5
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=100.00 E-value=1.2e-50 Score=389.68 Aligned_cols=220 Identities=19% Similarity=0.201 Sum_probs=206.1
Q ss_pred EeCCCcccCCCCCCCCCHHHHHHHHHHH-HhCCCCEEEEecc-CCC---CCcCCCCCHHHHHHHhhhcCCCeEEEEeCCh
Q 018252 130 VEVGPRDGLQNEKNTVPTGVKVELIRRL-VSSGLPVVEATSF-VSP---KWVPQLADARDVMEAVRDLEGARLPVLTPNL 204 (359)
Q Consensus 130 ~D~TLRDG~Q~~~~~~~~~~k~~ia~~L-~~aGv~~IEvG~f-vsp---k~vPq~~D~~ev~~~l~~~~~~~l~~l~~n~ 204 (359)
+|+|||||+|+++..|++++|++|++.| +++||+.||+|+| ++| +++||+.|..++...+ +++++.+|+||.
T Consensus 1 ~D~TlRDG~Q~~~~~~s~e~K~~i~~~L~~~~Gv~~IEvg~~~~s~~e~~av~~~~~~~~~~~~~---~~~~~~a~~~~~ 77 (280)
T cd07945 1 MDTTLRDGEQTSGVSFSPSEKLNIAKILLQELKVDRIEVASARVSEGEFEAVQKIIDWAAEEGLL---DRIEVLGFVDGD 77 (280)
T ss_pred CCCCCCCcCcCCCCccCHHHHHHHHHHHHHHhCCCEEEecCCCCCHHHHHHHHHHHHHhhhhccc---cCcEEEEecCcH
Confidence 4999999999999999999999999997 7889999999998 788 7777777655443332 378999999999
Q ss_pred HhHHHHHHcCCCEEEEecCCchHHHHhhhcCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHH
Q 018252 205 KGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAK 284 (359)
Q Consensus 205 ~gie~a~~aGv~~V~i~~s~S~~~~~~n~~~t~~e~l~~i~~~i~~Ak~~G~~V~~~is~~fg~~~~~r~~~e~l~~~a~ 284 (359)
+++++|+++|++.|++++|+|+.|.+.|+|+|++++++++.+++++|+++|++|+++++. |+||+ +++++++.++++
T Consensus 78 ~~~~~A~~~g~~~i~i~~~~S~~h~~~~~~~t~~e~l~~~~~~i~~a~~~G~~v~~~~~d-~~~~~--r~~~~~~~~~~~ 154 (280)
T cd07945 78 KSVDWIKSAGAKVLNLLTKGSLKHCTEQLRKTPEEHFADIREVIEYAIKNGIEVNIYLED-WSNGM--RDSPDYVFQLVD 154 (280)
T ss_pred HHHHHHHHCCCCEEEEEEeCCHHHHHHHHCcCHHHHHHHHHHHHHHHHhCCCEEEEEEEe-CCCCC--cCCHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999996 99887 889999999999
Q ss_pred HHHHCCcCEEEEcCCCCCCcHHHHHHHHHHHHHhCCCceEEEEeCCCCCcHHHHHHHHHHcCCCEEeceee
Q 018252 285 ELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQVSPMHAKPCFT 355 (359)
Q Consensus 285 ~l~~~Gad~I~L~DT~G~~~P~~v~~lv~~l~~~~p~~~L~~H~HNd~GLAlANalaAv~AGa~~ID~tl~ 355 (359)
++.++|+++|+|+||+|+++|.+++++++.+++++|+++|++|+|||+|||+||+++|+++||++||+|+.
T Consensus 155 ~~~~~G~~~i~l~DT~G~~~P~~v~~l~~~l~~~~~~~~i~~H~Hnd~Gla~AN~laA~~aGa~~vd~s~~ 225 (280)
T cd07945 155 FLSDLPIKRIMLPDTLGILSPFETYTYISDMVKRYPNLHFDFHAHNDYDLAVANVLAAVKAGIKGLHTTVN 225 (280)
T ss_pred HHHHcCCCEEEecCCCCCCCHHHHHHHHHHHHhhCCCCeEEEEeCCCCCHHHHHHHHHHHhCCCEEEEecc
Confidence 99999999999999999999999999999999999989999999999999999999999999999999985
No 6
>PRK14847 hypothetical protein; Provisional
Probab=100.00 E-value=6.5e-50 Score=390.41 Aligned_cols=252 Identities=15% Similarity=0.115 Sum_probs=218.5
Q ss_pred cccccccccccccccCccchhhhhhhhhcCCCCccEEEeCCCcccCCCCCCCCCHHHHHHHHHHHHhCCCCEEEEeccCC
Q 018252 93 HKMFGSACDIYNSNCNDKDIRDITNKFLKGIPRFVKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVS 172 (359)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~V~I~D~TLRDG~Q~~~~~~~~~~k~~ia~~L~~aGv~~IEvG~fvs 172 (359)
.||+..|...+-. ..+...|.||++++...| .|+|+|||||+|++|..|+.++|++|++.|+++||+.||+|+++.
T Consensus 3 ~~~~~~~~~~~~~-~~~~~~~~w~~~~~~~~p---~~~DTTLRDGeQ~pGv~fs~eeKl~IA~~L~~lGVd~IEvG~Pa~ 78 (333)
T PRK14847 3 AHPATKYRPFAPF-AADHAERAWPARRPAAAP---IWMSTDLRDGNQALIEPMDGARKLRLFEQLVAVGLKEIEVAFPSA 78 (333)
T ss_pred CCchhhcCCCCCC-CCCCccCCCcccccCCCC---ceecCCCCccCCCCCCCCCHHHHHHHHHHHHHcCCCEEEeeCCCC
Confidence 4788888654322 567899999999999888 699999999999999999999999999999999999999999754
Q ss_pred CCCcCCCCCHHHHHHHhhhc---CCCeEEEEeCCh-HhHHHHHHcCC----CEEEEecCCchHHHHhhhcCCHHHHHHHH
Q 018252 173 PKWVPQLADARDVMEAVRDL---EGARLPVLTPNL-KGFEAAIAAGA----KEVAIFASASEAFSKSNINCSIEDSLVRY 244 (359)
Q Consensus 173 pk~vPq~~D~~ev~~~l~~~---~~~~l~~l~~n~-~gie~a~~aGv----~~V~i~~s~S~~~~~~n~~~t~~e~l~~i 244 (359)
.. .|.+.+.+.++.. .++++.+|+|.. ++|+++++++. +.|++++|+|+.|.+.++|+++++.++++
T Consensus 79 s~-----~e~e~ir~I~~~~~~~~~~~i~~~~r~~~~dId~a~e~~~~~~~~~Vhi~~p~Sd~h~~~kl~~s~~~vl~~~ 153 (333)
T PRK14847 79 SQ-----TDFDFVRKLIDERRIPDDVTIEALTQSRPDLIARTFEALAGSPRAIVHLYNPIAPQWRRIVFGMSRAEIKEIA 153 (333)
T ss_pred CH-----HHHHHHHHHHHhCCCCCCcEEEEEecCcHHHHHHHHHHhCCCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHH
Confidence 31 3555565555543 368999999964 79999998855 56999999999999999999999999999
Q ss_pred HHHHHHHHhCCCcEEE---EEeeeecCCCCCCCCHHHHHHHHHHHHHC-C-----cCEEEEcCCCCCCcHHHHHHHHHHH
Q 018252 245 RAVAHAAKVLSIPVRG---YVSCVVGCPVEGAIPPSKVAYVAKELHDM-G-----CFEISLGDTIGVGTPGTVVPMLEAV 315 (359)
Q Consensus 245 ~~~i~~Ak~~G~~V~~---~is~~fg~~~~~r~~~e~l~~~a~~l~~~-G-----ad~I~L~DT~G~~~P~~v~~lv~~l 315 (359)
.+.+++||++|....+ .| .|+.+|++|++++|+.++++.+.+. | +++|+|+||+|+++|.+++++|+.+
T Consensus 154 ~~~v~~Ak~~~~~~~g~~~~V--~~~~EDasRad~dfL~~~~~~a~~~~ga~r~~a~~i~l~DTVG~~~P~~~~~~i~~l 231 (333)
T PRK14847 154 LAGTRQIRALADANPGTQWIY--EYSPETFSLAELDFAREVCDAVSAIWGPTPQRKMIINLPATVESSTANVYADQIEWM 231 (333)
T ss_pred HHHHHHHHHhccccCCCceEE--EEeeecCCCCCHHHHHHHHHHHHHHhCCCccCCcEEEeCCccccCCHHHHHHHHHHH
Confidence 9999999999652111 22 4888999999999999999987655 5 6779999999999999999999999
Q ss_pred HHhCC---CceEEEEeCCCCCcHHHHHHHHHHcCCCEEeceee
Q 018252 316 MAVVP---VEKLAVHLHDTYGQSLPNILISLQVSPMHAKPCFT 355 (359)
Q Consensus 316 ~~~~p---~~~L~~H~HNd~GLAlANalaAv~AGa~~ID~tl~ 355 (359)
+++++ .++|++|+|||+|||+||+++|+++||++||+|++
T Consensus 232 ~~~~~~~~~v~i~~H~HnD~GlA~ANslaA~~aGa~~i~~tv~ 274 (333)
T PRK14847 232 HRSLARRDCIVLSVHPHNDRGTAVAAAELAVLAGAERIEGCLF 274 (333)
T ss_pred HHhcCCCCCcEEEEEeCCCCchHHHHHHHHHHhCCCEEEeeCC
Confidence 98875 68999999999999999999999999999999986
No 7
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=100.00 E-value=5.9e-48 Score=368.30 Aligned_cols=214 Identities=22% Similarity=0.264 Sum_probs=199.4
Q ss_pred EEeCCCcccCCCCCCCCCHHHHHHHHHHHHhCCCCEEEEeccC-CCCCcCCCCCHHHHHHHhh-hcCCCeEEEEeC-ChH
Q 018252 129 IVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFV-SPKWVPQLADARDVMEAVR-DLEGARLPVLTP-NLK 205 (359)
Q Consensus 129 I~D~TLRDG~Q~~~~~~~~~~k~~ia~~L~~aGv~~IEvG~fv-spk~vPq~~D~~ev~~~l~-~~~~~~l~~l~~-n~~ 205 (359)
|+|||||||+|+++..|++++|++|++.|+++||+.||+|+|+ +|+ |++ .++.+. ..+++++.+|+| +.+
T Consensus 1 i~D~TlRDG~Q~~~~~~~~~~k~~i~~~L~~~Gv~~iEvg~~~~~~~------~~~-~~~~l~~~~~~~~~~~l~r~~~~ 73 (268)
T cd07940 1 IFDTTLRDGEQTPGVSLTPEEKLEIARQLDELGVDVIEAGFPAASPG------DFE-AVKRIAREVLNAEICGLARAVKK 73 (268)
T ss_pred CCCCCCCccccCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCCCHH------HHH-HHHHHHHhCCCCEEEEEccCCHh
Confidence 6899999999999999999999999999999999999999987 442 444 444444 478999999996 789
Q ss_pred hHHHHHHcC----CCEEEEecCCchHHHHhhhcCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHH
Q 018252 206 GFEAAIAAG----AKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAY 281 (359)
Q Consensus 206 gie~a~~aG----v~~V~i~~s~S~~~~~~n~~~t~~e~l~~i~~~i~~Ak~~G~~V~~~is~~fg~~~~~r~~~e~l~~ 281 (359)
++++++++| ++.|+++.++|+.|.+.|+|++++++++.+.+++++||++|++|. |++++.++++++++.+
T Consensus 74 ~v~~a~~~~~~~~~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~------~~~~~~~~~~~~~~~~ 147 (268)
T cd07940 74 DIDAAAEALKPAKVDRIHTFIATSDIHLKYKLKKTREEVLERAVEAVEYAKSHGLDVE------FSAEDATRTDLDFLIE 147 (268)
T ss_pred hHHHHHHhCCCCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEE------EeeecCCCCCHHHHHH
Confidence 999999999 999999999999999999999999999999999999999999873 7888999999999999
Q ss_pred HHHHHHHCCcCEEEEcCCCCCCcHHHHHHHHHHHHHhCCC--ceEEEEeCCCCCcHHHHHHHHHHcCCCEEeceee
Q 018252 282 VAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPV--EKLAVHLHDTYGQSLPNILISLQVSPMHAKPCFT 355 (359)
Q Consensus 282 ~a~~l~~~Gad~I~L~DT~G~~~P~~v~~lv~~l~~~~p~--~~L~~H~HNd~GLAlANalaAv~AGa~~ID~tl~ 355 (359)
+++++.++|+++|+|+||+|.++|.+++++++.+++.+|+ ++|++|+|||+|||+||+++|+++||++||+|+.
T Consensus 148 ~~~~~~~~G~~~i~l~DT~G~~~P~~v~~lv~~l~~~~~~~~i~l~~H~Hn~~GlA~An~laAi~aG~~~iD~s~~ 223 (268)
T cd07940 148 VVEAAIEAGATTINIPDTVGYLTPEEFGELIKKLKENVPNIKVPISVHCHNDLGLAVANSLAAVEAGARQVECTIN 223 (268)
T ss_pred HHHHHHHcCCCEEEECCCCCCCCHHHHHHHHHHHHHhCCCCceeEEEEecCCcchHHHHHHHHHHhCCCEEEEEee
Confidence 9999999999999999999999999999999999999986 8999999999999999999999999999999985
No 8
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=100.00 E-value=1.2e-47 Score=364.46 Aligned_cols=213 Identities=21% Similarity=0.238 Sum_probs=197.9
Q ss_pred EEeCCCcccCCCCCCCCCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcCCCCCHH-HHHHHhhh-cCCCeEEEEeC-ChH
Q 018252 129 IVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADAR-DVMEAVRD-LEGARLPVLTP-NLK 205 (359)
Q Consensus 129 I~D~TLRDG~Q~~~~~~~~~~k~~ia~~L~~aGv~~IEvG~fvspk~vPq~~D~~-ev~~~l~~-~~~~~l~~l~~-n~~ 205 (359)
|+|||||||+|+++..|++++|++|++.|+++||+.||+|++ ++.+.+ ++++.+.+ .+++++.+|++ +.+
T Consensus 1 i~D~TlRDG~Q~~~~~~~~~~k~~i~~~L~~~Gv~~iE~g~p-------~~~~~~~e~~~~l~~~~~~~~~~~~~r~~~~ 73 (259)
T cd07939 1 INDTTLRDGEQAPGVAFSREEKLAIARALDEAGVDEIEVGIP-------AMGEEEREAIRAIVALGLPARLIVWCRAVKE 73 (259)
T ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCCEEEEecC-------CCCHHHHHHHHHHHhcCCCCEEEEeccCCHH
Confidence 689999999999999999999999999999999999999974 444433 45555554 67899999996 789
Q ss_pred hHHHHHHcCCCEEEEecCCchHHHHhhhcCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHH
Q 018252 206 GFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKE 285 (359)
Q Consensus 206 gie~a~~aGv~~V~i~~s~S~~~~~~n~~~t~~e~l~~i~~~i~~Ak~~G~~V~~~is~~fg~~~~~r~~~e~l~~~a~~ 285 (359)
+++++.++|++.|++++++|+.|.+.|+|+|++++++++.+++++||++|+.|+ |++++.++++++++.+++++
T Consensus 74 ~v~~a~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~------~~~~~~~~~~~~~~~~~~~~ 147 (259)
T cd07939 74 DIEAALRCGVTAVHISIPVSDIHLAHKLGKDRAWVLDQLRRLVGRAKDRGLFVS------VGAEDASRADPDFLIEFAEV 147 (259)
T ss_pred HHHHHHhCCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEE------EeeccCCCCCHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999874 77789999999999999999
Q ss_pred HHHCCcCEEEEcCCCCCCcHHHHHHHHHHHHHhCCCceEEEEeCCCCCcHHHHHHHHHHcCCCEEeceee
Q 018252 286 LHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQVSPMHAKPCFT 355 (359)
Q Consensus 286 l~~~Gad~I~L~DT~G~~~P~~v~~lv~~l~~~~p~~~L~~H~HNd~GLAlANalaAv~AGa~~ID~tl~ 355 (359)
+.++|+++|+|+||+|.++|.+++++++.+++.+| ++|++|+|||+|||+||+++|+++||++||+|+.
T Consensus 148 ~~~~G~~~i~l~DT~G~~~P~~v~~lv~~l~~~~~-~~l~~H~Hn~~Gla~An~laAi~aG~~~vd~s~~ 216 (259)
T cd07939 148 AQEAGADRLRFADTVGILDPFTTYELIRRLRAATD-LPLEFHAHNDLGLATANTLAAVRAGATHVSVTVN 216 (259)
T ss_pred HHHCCCCEEEeCCCCCCCCHHHHHHHHHHHHHhcC-CeEEEEecCCCChHHHHHHHHHHhCCCEEEEecc
Confidence 99999999999999999999999999999999999 8999999999999999999999999999999985
No 9
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=100.00 E-value=1.8e-47 Score=364.49 Aligned_cols=217 Identities=20% Similarity=0.256 Sum_probs=196.9
Q ss_pred cEEEeCCCcccCCCCCCCCCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcCCCCCHHHHHHHhhhcCCCeEEEEeC-ChH
Q 018252 127 VKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPVLTP-NLK 205 (359)
Q Consensus 127 V~I~D~TLRDG~Q~~~~~~~~~~k~~ia~~L~~aGv~~IEvG~fvspk~vPq~~D~~ev~~~l~~~~~~~l~~l~~-n~~ 205 (359)
.+|+|||||||+|+++..|++++|++|++.|+++||+.||+|+ |+..|++.+..+++..+ .....+.++++ +.+
T Consensus 1 ~~I~D~TLRDG~Q~~~~~~s~~~k~~i~~~L~~~Gv~~IEvG~---P~~~~~~~~~~~~l~~~--~~~~~v~~~~r~~~~ 75 (262)
T cd07948 1 FKIIDSTLREGEQFANAFFDTEDKIEIAKALDAFGVDYIELTS---PAASPQSRADCEAIAKL--GLKAKILTHIRCHMD 75 (262)
T ss_pred CEEEECCCCCcCcCCCCCCCHHHHHHHHHHHHHcCCCEEEEEC---CCCCHHHHHHHHHHHhC--CCCCcEEEEecCCHH
Confidence 3799999999999999999999999999999999999999998 55667766554444322 23356666665 889
Q ss_pred hHHHHHHcCCCEEEEecCCchHHHHhhhcCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHH
Q 018252 206 GFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKE 285 (359)
Q Consensus 206 gie~a~~aGv~~V~i~~s~S~~~~~~n~~~t~~e~l~~i~~~i~~Ak~~G~~V~~~is~~fg~~~~~r~~~e~l~~~a~~ 285 (359)
|+++|+++|++.|++++++|+.|.+.|+|++++++++.+.+++++||++|++|+++++.+| +++++++.+++++
T Consensus 76 di~~a~~~g~~~i~i~~~~S~~~~~~~~~~~~~e~~~~~~~~i~~a~~~G~~v~~~~eda~------r~~~~~l~~~~~~ 149 (262)
T cd07948 76 DARIAVETGVDGVDLVFGTSPFLREASHGKSITEIIESAVEVIEFVKSKGIEVRFSSEDSF------RSDLVDLLRVYRA 149 (262)
T ss_pred HHHHHHHcCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeeC------CCCHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999988887655 5679999999999
Q ss_pred HHHCCcCEEEEcCCCCCCcHHHHHHHHHHHHHhCCCceEEEEeCCCCCcHHHHHHHHHHcCCCEEeceee
Q 018252 286 LHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQVSPMHAKPCFT 355 (359)
Q Consensus 286 l~~~Gad~I~L~DT~G~~~P~~v~~lv~~l~~~~p~~~L~~H~HNd~GLAlANalaAv~AGa~~ID~tl~ 355 (359)
+.++|+++|+|+||+|+++|.+++++++.+++.++ ++|++|+|||+|||+||+++|+++||++||+|+.
T Consensus 150 ~~~~g~~~i~l~Dt~G~~~P~~v~~~~~~~~~~~~-~~i~~H~Hn~~Gla~an~~~a~~aG~~~vd~s~~ 218 (262)
T cd07948 150 VDKLGVNRVGIADTVGIATPRQVYELVRTLRGVVS-CDIEFHGHNDTGCAIANAYAALEAGATHIDTTVL 218 (262)
T ss_pred HHHcCCCEEEECCcCCCCCHHHHHHHHHHHHHhcC-CeEEEEECCCCChHHHHHHHHHHhCCCEEEEecc
Confidence 99999999999999999999999999999999998 8999999999999999999999999999999985
No 10
>TIGR00970 leuA_yeast 2-isopropylmalate synthase, yeast type. A larger family of homologous proteins includes homocitrate synthase, distinct lineages of 2-isopropylmalate synthase, several distinct, uncharacterized, orthologous sets in the Archaea, and other related enzymes. This model describes a family of 2-isopropylmalate synthases as found in yeasts and in a minority of studied bacteria.
Probab=100.00 E-value=1.3e-47 Score=398.97 Aligned_cols=249 Identities=16% Similarity=0.148 Sum_probs=218.9
Q ss_pred ccccccccccccCccchhhhhhhhhcCCCCccEEEeCCCcccCCCCCCCCCHHHHHHHHHHHHhCCCCEEEEeccCCCCC
Q 018252 96 FGSACDIYNSNCNDKDIRDITNKFLKGIPRFVKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKW 175 (359)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~V~I~D~TLRDG~Q~~~~~~~~~~k~~ia~~L~~aGv~~IEvG~fvspk~ 175 (359)
+.+|+. |. .++...|+||++.++ +.+.|+|+|||||+|+++..|++++|++|++.|+++||++||+||+ +++
T Consensus 2 ~~~y~~-~~--~~~~~~~~w~~~~~~---~~~~~~DtTLRDG~Q~~g~~~s~e~Ki~ia~~L~~~Gvd~IE~Gfp-~~s- 73 (564)
T TIGR00970 2 SNKYKP-FA--PIRLRNRTWPDRVIT---RAPRWLSTDLRDGNQALPDPMSPARKRRYFDLLVRIGFKEIEVGFP-SAS- 73 (564)
T ss_pred CcccCC-CC--CCCCCCCCCCccccC---cCCeEecCCCCccccCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCC-CCC-
Confidence 456655 22 367899999999877 4459999999999999999999999999999999999999999954 433
Q ss_pred cCCCCCHHHHHHHhhh--c-CCCeEEEEeCChH-hHHHHHHc--CCC--EEEEecCCchHHHHhhhcCCHHHHHHHHHHH
Q 018252 176 VPQLADARDVMEAVRD--L-EGARLPVLTPNLK-GFEAAIAA--GAK--EVAIFASASEAFSKSNINCSIEDSLVRYRAV 247 (359)
Q Consensus 176 vPq~~D~~ev~~~l~~--~-~~~~l~~l~~n~~-gie~a~~a--Gv~--~V~i~~s~S~~~~~~n~~~t~~e~l~~i~~~ 247 (359)
..|.+++.+.++. . +++++.+|+|+.+ ++++++++ |++ .|++|+++|+.|.+.|+|+|++++++++.++
T Consensus 74 ---~~D~e~v~~i~~~~l~~~~~~i~al~~~~~~did~a~~a~~~~~~~~v~i~~~~Sd~h~~~~l~~s~ee~l~~~~~~ 150 (564)
T TIGR00970 74 ---QTDFDFVREIIEQGAIPDDVTIQVLTQSREELIERTFEALSGAKRATVHFYNATSILFREVVFRASRAEVQAIATDG 150 (564)
T ss_pred ---HHHHHHHHHHHHhcCCCCCcEEEEEcCCchhhHHHHHHHhcCCCCCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHH
Confidence 2788888888775 2 4799999999985 59999987 554 7999999999999999999999999999999
Q ss_pred HHHHHhCCCcEEEEE----eeeecCCCCCCCCHHHHHHHHHHHHHCCc------CEEEEcCCCCCCcHHHHHHHHHHHHH
Q 018252 248 AHAAKVLSIPVRGYV----SCVVGCPVEGAIPPSKVAYVAKELHDMGC------FEISLGDTIGVGTPGTVVPMLEAVMA 317 (359)
Q Consensus 248 i~~Ak~~G~~V~~~i----s~~fg~~~~~r~~~e~l~~~a~~l~~~Ga------d~I~L~DT~G~~~P~~v~~lv~~l~~ 317 (359)
+++||++|..+..++ .+.|+.+|++|++++++.++++++.++|+ ++|+|+||+|+++|.+++++++.+++
T Consensus 151 v~~ak~~~~~~~~~~~~~~~v~f~~Ed~~r~d~~~l~~~~~~a~~ag~~~~~~~~~i~l~DTvG~a~P~~~~~~i~~l~~ 230 (564)
T TIGR00970 151 TKLVRKCTKQAAKYPGTQWRFEYSPESFSDTELEFAKEVCEAVKEVWAPTPERPIIFNLPATVEMTTPNVYADSIEYFST 230 (564)
T ss_pred HHHHHHhcccccccccceEEEEEecccCCCCCHHHHHHHHHHHHHhCCCccCCeeEEEeccccCccCHHHHHHHHHHHHH
Confidence 999999988654443 34578888899999999999999999987 49999999999999999999999999
Q ss_pred hCCC---ceEEEEeCCCCCcHHHHHHHHHHcCCCEEeceee
Q 018252 318 VVPV---EKLAVHLHDTYGQSLPNILISLQVSPMHAKPCFT 355 (359)
Q Consensus 318 ~~p~---~~L~~H~HNd~GLAlANalaAv~AGa~~ID~tl~ 355 (359)
.+|. ++|++|||||+|||+||+++|+++||++||+|+.
T Consensus 231 ~~~~~~~~~l~vH~HND~GlAvANslaAv~aGa~~v~gt~~ 271 (564)
T TIGR00970 231 NIAEREKVCLSLHPHNDRGTAVAAAELGFLAGADRIEGCLF 271 (564)
T ss_pred hcCcccCceEEEEECCCCChHHHHHHHHHHhCCCEEEeecC
Confidence 8764 5699999999999999999999999999999985
No 11
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=100.00 E-value=2e-47 Score=381.26 Aligned_cols=218 Identities=21% Similarity=0.274 Sum_probs=200.4
Q ss_pred CCccEEEeCCCcccCCCCCCCCCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcCCCCCHH-HHHHHhh-hcCCCeEEEEe
Q 018252 124 PRFVKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADAR-DVMEAVR-DLEGARLPVLT 201 (359)
Q Consensus 124 p~~V~I~D~TLRDG~Q~~~~~~~~~~k~~ia~~L~~aGv~~IEvG~fvspk~vPq~~D~~-ev~~~l~-~~~~~~l~~l~ 201 (359)
|++|+|+|||||||+|+++..|++++|++|++.|+++||+.||+|+|. +.+.+ ++++.+. ...+.++.+|+
T Consensus 2 ~~~v~I~DtTLRDG~Q~~~~~~s~e~k~~ia~~L~~~GV~~IE~G~p~-------~~~~~~e~i~~i~~~~~~~~i~~~~ 74 (378)
T PRK11858 2 PKDIEIVDTTLRDGEQTPGVVFTNEEKLAIARMLDEIGVDQIEAGFPA-------VSEDEKEAIKAIAKLGLNASILALN 74 (378)
T ss_pred CCeeEEEeCCCCccCcCCCCCCCHHHHHHHHHHHHHhCCCEEEEeCCC-------cChHHHHHHHHHHhcCCCeEEEEEc
Confidence 678999999999999999999999999999999999999999999843 34433 4444444 44568889999
Q ss_pred CC-hHhHHHHHHcCCCEEEEecCCchHHHHhhhcCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHH
Q 018252 202 PN-LKGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVA 280 (359)
Q Consensus 202 ~n-~~gie~a~~aGv~~V~i~~s~S~~~~~~n~~~t~~e~l~~i~~~i~~Ak~~G~~V~~~is~~fg~~~~~r~~~e~l~ 280 (359)
+. .+++++++++|++.|++++++|+.|.+.|+|+|++++++++.+++++|+++|+.|. |+++++++++++++.
T Consensus 75 r~~~~di~~a~~~g~~~i~i~~~~Sd~h~~~~~~~s~~~~l~~~~~~v~~a~~~G~~v~------~~~ed~~r~~~~~l~ 148 (378)
T PRK11858 75 RAVKSDIDASIDCGVDAVHIFIATSDIHIKHKLKKTREEVLERMVEAVEYAKDHGLYVS------FSAEDASRTDLDFLI 148 (378)
T ss_pred ccCHHHHHHHHhCCcCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEE------EEeccCCCCCHHHHH
Confidence 85 68999999999999999999999999999999999999999999999999999874 567899999999999
Q ss_pred HHHHHHHHCCcCEEEEcCCCCCCcHHHHHHHHHHHHHhCCCceEEEEeCCCCCcHHHHHHHHHHcCCCEEeceee
Q 018252 281 YVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQVSPMHAKPCFT 355 (359)
Q Consensus 281 ~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~lv~~l~~~~p~~~L~~H~HNd~GLAlANalaAv~AGa~~ID~tl~ 355 (359)
++++.+.++|+++|+||||+|.++|.+++++++.+++.+ +++|++|+|||+|||+||+++|+++||++||+|+.
T Consensus 149 ~~~~~~~~~Ga~~I~l~DT~G~~~P~~v~~lv~~l~~~~-~~~l~~H~Hnd~GlA~AN~laAv~aGa~~vd~tv~ 222 (378)
T PRK11858 149 EFAKAAEEAGADRVRFCDTVGILDPFTMYELVKELVEAV-DIPIEVHCHNDFGMATANALAGIEAGAKQVHTTVN 222 (378)
T ss_pred HHHHHHHhCCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCeEEEEecCCcCHHHHHHHHHHHcCCCEEEEeec
Confidence 999999999999999999999999999999999999998 57999999999999999999999999999999985
No 12
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=100.00 E-value=3.1e-47 Score=378.32 Aligned_cols=216 Identities=21% Similarity=0.217 Sum_probs=199.7
Q ss_pred ccEEEeCCCcccCCCCCCCCCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcCCCCCHH-HHHHHhh-hcCCCeEEEEeC-
Q 018252 126 FVKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADAR-DVMEAVR-DLEGARLPVLTP- 202 (359)
Q Consensus 126 ~V~I~D~TLRDG~Q~~~~~~~~~~k~~ia~~L~~aGv~~IEvG~fvspk~vPq~~D~~-ev~~~l~-~~~~~~l~~l~~- 202 (359)
.|+|+|||||||+|+++..|++++|++|++.|+++||+.||+|++. +.+.+ ++++.+. ..++.++.+|+|
T Consensus 1 ~v~i~D~TLRDG~Q~~~~~~s~~~k~~ia~~L~~~Gv~~IEvG~p~-------~~~~~~e~i~~i~~~~~~~~i~~~~r~ 73 (365)
T TIGR02660 1 PVIINDTTLRDGEQAPGVAFTAAEKLAIARALDEAGVDELEVGIPA-------MGEEERAVIRAIVALGLPARLMAWCRA 73 (365)
T ss_pred CcEEEeCCCCCcCcCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCC-------CCHHHHHHHHHHHHcCCCcEEEEEcCC
Confidence 3789999999999999999999999999999999999999999853 33433 4445454 457899999997
Q ss_pred ChHhHHHHHHcCCCEEEEecCCchHHHHhhhcCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHH
Q 018252 203 NLKGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYV 282 (359)
Q Consensus 203 n~~gie~a~~aGv~~V~i~~s~S~~~~~~n~~~t~~e~l~~i~~~i~~Ak~~G~~V~~~is~~fg~~~~~r~~~e~l~~~ 282 (359)
+.++++.++++|++.|++++++|+.|.+.|+|++++++++++.+++++||++|++|. |+++++++++++++.++
T Consensus 74 ~~~di~~a~~~g~~~i~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~i~~ak~~g~~v~------~~~ed~~r~~~~~l~~~ 147 (365)
T TIGR02660 74 RDADIEAAARCGVDAVHISIPVSDLQIEAKLRKDRAWVLERLARLVSFARDRGLFVS------VGGEDASRADPDFLVEL 147 (365)
T ss_pred CHHHHHHHHcCCcCEEEEEEccCHHHHHHHhCcCHHHHHHHHHHHHHHHHhCCCEEE------EeecCCCCCCHHHHHHH
Confidence 679999999999999999999999999999999999999999999999999999873 77889999999999999
Q ss_pred HHHHHHCCcCEEEEcCCCCCCcHHHHHHHHHHHHHhCCCceEEEEeCCCCCcHHHHHHHHHHcCCCEEeceee
Q 018252 283 AKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQVSPMHAKPCFT 355 (359)
Q Consensus 283 a~~l~~~Gad~I~L~DT~G~~~P~~v~~lv~~l~~~~p~~~L~~H~HNd~GLAlANalaAv~AGa~~ID~tl~ 355 (359)
++++.++|+++|+||||+|.++|.+++++++.+++.++ ++|++|+|||+|||+||+++|+++||++||+|++
T Consensus 148 ~~~~~~~Ga~~i~l~DT~G~~~P~~v~~lv~~l~~~~~-v~l~~H~HNd~GlA~ANalaA~~aGa~~vd~tl~ 219 (365)
T TIGR02660 148 AEVAAEAGADRFRFADTVGILDPFSTYELVRALRQAVD-LPLEMHAHNDLGMATANTLAAVRAGATHVNTTVN 219 (365)
T ss_pred HHHHHHcCcCEEEEcccCCCCCHHHHHHHHHHHHHhcC-CeEEEEecCCCChHHHHHHHHHHhCCCEEEEEee
Confidence 99999999999999999999999999999999999986 7999999999999999999999999999999986
No 13
>PRK00915 2-isopropylmalate synthase; Validated
Probab=100.00 E-value=3.2e-47 Score=392.96 Aligned_cols=221 Identities=21% Similarity=0.252 Sum_probs=205.8
Q ss_pred CCCccEEEeCCCcccCCCCCCCCCHHHHHHHHHHHHhCCCCEEEEeccC-CCCCcCCCCCHHHHHHHhhhcCCCeEEEEe
Q 018252 123 IPRFVKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFV-SPKWVPQLADARDVMEAVRDLEGARLPVLT 201 (359)
Q Consensus 123 ~p~~V~I~D~TLRDG~Q~~~~~~~~~~k~~ia~~L~~aGv~~IEvG~fv-spk~vPq~~D~~ev~~~l~~~~~~~l~~l~ 201 (359)
||++|+|+|||||||+|+++..|++++|++|++.|+++||+.||+|++. +| .|.+.+.+..+..+++++.+|+
T Consensus 1 m~~~v~I~DtTLRDG~Q~~g~~~s~e~K~~ia~~L~~~Gv~~IE~G~p~~s~------~d~~~v~~i~~~~~~~~i~a~~ 74 (513)
T PRK00915 1 MMDRVIIFDTTLRDGEQSPGASLTVEEKLQIAKQLERLGVDVIEAGFPASSP------GDFEAVKRIARTVKNSTVCGLA 74 (513)
T ss_pred CCCCcEEEECCCCcCCCCCCCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCh------HHHHHHHHHHhhCCCCEEEEEc
Confidence 4788999999999999999999999999999999999999999999964 43 3666665555667889999999
Q ss_pred C-ChHhHHHHH----HcCCCEEEEecCCchHHHHhhhcCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCH
Q 018252 202 P-NLKGFEAAI----AAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPP 276 (359)
Q Consensus 202 ~-n~~gie~a~----~aGv~~V~i~~s~S~~~~~~n~~~t~~e~l~~i~~~i~~Ak~~G~~V~~~is~~fg~~~~~r~~~ 276 (359)
+ +.+++++++ ++|.++|++++++|+.|.+.++|++++++++++.+++++||++|++| .|+++|++++++
T Consensus 75 r~~~~did~a~~a~~~~~~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~~g~~v------~f~~ed~~r~d~ 148 (513)
T PRK00915 75 RAVKKDIDAAAEALKPAEAPRIHTFIATSPIHMEYKLKMSREEVLEMAVEAVKYARSYTDDV------EFSAEDATRTDL 148 (513)
T ss_pred cCCHHHHHHHHHHhhcCCCCEEEEEECCcHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeE------EEEeCCCCCCCH
Confidence 8 568999998 67889999999999999999999999999999999999999999987 488899999999
Q ss_pred HHHHHHHHHHHHCCcCEEEEcCCCCCCcHHHHHHHHHHHHHhCCC---ceEEEEeCCCCCcHHHHHHHHHHcCCCEEece
Q 018252 277 SKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPV---EKLAVHLHDTYGQSLPNILISLQVSPMHAKPC 353 (359)
Q Consensus 277 e~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~lv~~l~~~~p~---~~L~~H~HNd~GLAlANalaAv~AGa~~ID~t 353 (359)
+|+.++++.+.++|+++|+||||+|+++|.+++++++.+++.+|. ++|++|+|||+|||+||+++|+++||++||+|
T Consensus 149 ~~l~~~~~~~~~~Ga~~i~l~DTvG~~~P~~~~~~i~~l~~~~~~~~~v~l~~H~HND~GlAvANslaAv~aGa~~Vd~T 228 (513)
T PRK00915 149 DFLCRVVEAAIDAGATTINIPDTVGYTTPEEFGELIKTLRERVPNIDKAIISVHCHNDLGLAVANSLAAVEAGARQVECT 228 (513)
T ss_pred HHHHHHHHHHHHcCCCEEEEccCCCCCCHHHHHHHHHHHHHhCCCcccceEEEEecCCCCHHHHHHHHHHHhCCCEEEEE
Confidence 999999999999999999999999999999999999999999885 89999999999999999999999999999999
Q ss_pred ee
Q 018252 354 FT 355 (359)
Q Consensus 354 l~ 355 (359)
+.
T Consensus 229 v~ 230 (513)
T PRK00915 229 IN 230 (513)
T ss_pred ee
Confidence 86
No 14
>PLN03228 methylthioalkylmalate synthase; Provisional
Probab=100.00 E-value=2.2e-47 Score=391.14 Aligned_cols=232 Identities=18% Similarity=0.240 Sum_probs=205.1
Q ss_pred hhhhhhhhcCC--CCccEEEeCCCcccCCCCCCCCCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcCCCCCHHHHHHHhh
Q 018252 113 RDITNKFLKGI--PRFVKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVR 190 (359)
Q Consensus 113 ~~~~~~~~~~~--p~~V~I~D~TLRDG~Q~~~~~~~~~~k~~ia~~L~~aGv~~IEvG~fvspk~vPq~~D~~ev~~~l~ 190 (359)
..||..+..++ +++|+|+|||||||+|+++..|++++|++|++.|+++||++||+|+|... |+ +.+.+.+..+
T Consensus 69 ~~~~~~~~~~~~~~~~V~I~DtTLRDGeQ~~gv~fs~eeKi~Ia~~L~~~GVd~IEvG~Pa~s---~~--e~e~i~~i~~ 143 (503)
T PLN03228 69 ERWPEYIPNKLPDKNYVRVLDTTLRDGEQSPGGSLTPPQKLEIARQLAKLRVDIMEVGFPGSS---EE--EFEAVKTIAK 143 (503)
T ss_pred hcccccCCcccCCCCCeEEEeCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCCC---HH--HHHHHHHHHH
Confidence 45777766555 45899999999999999999999999999999999999999999996432 32 3444433333
Q ss_pred hcC---------CCeEEEEeCCh-HhHHHHHHc----CCCEEEEecCCchHHHHhhhcCCHHHHHHHHHHHHHHHHhCCC
Q 018252 191 DLE---------GARLPVLTPNL-KGFEAAIAA----GAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSI 256 (359)
Q Consensus 191 ~~~---------~~~l~~l~~n~-~gie~a~~a----Gv~~V~i~~s~S~~~~~~n~~~t~~e~l~~i~~~i~~Ak~~G~ 256 (359)
..+ ...+.+|+|.. +|++.++++ |+++|++++++|+.|.+.|+|++++++++++.+++++||++|+
T Consensus 144 ~~~~~~~~~~~l~~~i~a~~R~~~~dId~a~~a~~~a~~~~V~i~i~~Sd~h~~~kl~~s~ee~l~~~~~~V~~Ak~~G~ 223 (503)
T PLN03228 144 TVGNEVDEETGYVPVICGIARCKKRDIEAAWEALKYAKRPRILAFTSTSDIHMKYKLKKTKEEVIEMAVSSIRYAKSLGF 223 (503)
T ss_pred hcccccccccccceEEeeecccCHhhHHHHHHhhcccCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCC
Confidence 322 26778899854 799999987 7789999999999999999999999999999999999999998
Q ss_pred c-EEEEEeeeecCCCCCCCCHHHHHHHHHHHHHCCcCEEEEcCCCCCCcHHHHHHHHHHHHHhCC---CceEEEEeCCCC
Q 018252 257 P-VRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVP---VEKLAVHLHDTY 332 (359)
Q Consensus 257 ~-V~~~is~~fg~~~~~r~~~e~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~lv~~l~~~~p---~~~L~~H~HNd~ 332 (359)
. | .|++||++|++++++.++++++.++|+++|+||||+|.++|.+++++++.+++.+| +++|++|+|||+
T Consensus 224 ~~v------~f~~EDa~Rtd~efl~~~~~~a~~~Gad~I~l~DTvG~~tP~~v~~lV~~l~~~~~~~~~i~I~~H~HND~ 297 (503)
T PLN03228 224 HDI------QFGCEDGGRSDKEFLCKILGEAIKAGATSVGIADTVGINMPHEFGELVTYVKANTPGIDDIVFSVHCHNDL 297 (503)
T ss_pred ceE------EeccccccccCHHHHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHHHhccccCceeEecccCCc
Confidence 6 3 59999999999999999999999999999999999999999999999999999886 478999999999
Q ss_pred CcHHHHHHHHHHcCCCEEeceee
Q 018252 333 GQSLPNILISLQVSPMHAKPCFT 355 (359)
Q Consensus 333 GLAlANalaAv~AGa~~ID~tl~ 355 (359)
|||+||+++|+++||++||+|++
T Consensus 298 GlAvANslaAi~aGa~~Vd~Tv~ 320 (503)
T PLN03228 298 GLATANTIAGICAGARQVEVTIN 320 (503)
T ss_pred ChHHHHHHHHHHhCCCEEEEecc
Confidence 99999999999999999999985
No 15
>cd07942 DRE_TIM_LeuA Mycobacterium tuberculosis LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Alpha-isopropylmalate synthase (LeuA), a key enzyme in leucine biosynthesis, catalyzes the first committed step in the pathway, converting acetyl-CoA and alpha-ketoisovalerate to alpha-isopropyl malate and CoA. Although the reaction catalyzed by LeuA is similar to that of the Arabidopsis thaliana IPMS1 protein, the two fall into phylogenetically distinct families within the same superfamily. LeuA has and N-terminal TIM barrel catalytic domain, a helical linker domain, and a C-terminal regulatory domain. LeuA forms a homodimer in which the linker domain of one monomer sits over the catalytic domain of the other, inserting residues into the active site that may be important for catalysis. Homologs of LeuA are found in bacteria as well as fungi. This family includes alpha-isopropylmalate synthases I (LEU4) and II (LEU9) from Saccharomyces cerevisiae. This family belong
Probab=100.00 E-value=2.6e-47 Score=366.97 Aligned_cols=221 Identities=18% Similarity=0.165 Sum_probs=196.7
Q ss_pred EEEeCCCcccCCCCCCCCCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcCCCCCHH-HHHHHh-hh---cCCCeEEEEeC
Q 018252 128 KIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADAR-DVMEAV-RD---LEGARLPVLTP 202 (359)
Q Consensus 128 ~I~D~TLRDG~Q~~~~~~~~~~k~~ia~~L~~aGv~~IEvG~fvspk~vPq~~D~~-ev~~~l-~~---~~~~~l~~l~~ 202 (359)
.++|+|||||+|+++..|++++|++|+++|+++||+.||+|+ |++.+.+ ++.+.+ .. .+++++.+|+|
T Consensus 3 ~~~d~tlRDG~Q~~g~~~s~~~Ki~ia~~L~~~Gv~~IE~gf-------P~~~~~e~e~~~~i~~~~~~~~~~~~~al~r 75 (284)
T cd07942 3 IWCSVDLRDGNQALAEPMSVEQKLRFFKLLVKIGFKEIEVGF-------PSASQTDFDFVRELIEEDLIPDDVTIQVLTQ 75 (284)
T ss_pred cccCCCCCCcCCCCCCCCCHHHHHHHHHHHHHcCCCEEEEeC-------CCCCHHHHHHHHHHHHccCCCCCCEEEEEcC
Confidence 588999999999999999999999999999999999999996 5677766 677766 44 24799999999
Q ss_pred ChHh-HHHHHHc--CCC--EEEEecCCchHHHHhhhcCCHHHHHHHHHHHHHHHHhCCCcE-EEEEeeeecCCCCCCCCH
Q 018252 203 NLKG-FEAAIAA--GAK--EVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPV-RGYVSCVVGCPVEGAIPP 276 (359)
Q Consensus 203 n~~g-ie~a~~a--Gv~--~V~i~~s~S~~~~~~n~~~t~~e~l~~i~~~i~~Ak~~G~~V-~~~is~~fg~~~~~r~~~ 276 (359)
|.++ +++|+++ |++ .|++++|+|+.|.+.|+|+|++|+++++.+++++||++|++. ...+-+.|+.+|++|+++
T Consensus 76 ~~~~die~a~~~~~~~~~~~v~i~~~~Sd~h~~~~~~~s~~e~~~~~~~~v~~a~~~g~~~~~~~~~~~~~~EDasr~~~ 155 (284)
T cd07942 76 AREDLIERTFEALRGAKKAIVHLYNATSPLQRRVVFGKSKEEIIEIAVDGAKLVKELAAKYPETDWRFEYSPESFSDTEL 155 (284)
T ss_pred CChhhHHHHHHHhCCCCCCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcccccCceEEEEECCccCCCCCH
Confidence 9855 9999998 776 799999999999999999999999999999999999999751 111234577888889999
Q ss_pred HHHHHHHHHHHHC---CcC---EEEEcCCCCCCcHHHHHHHHHHHHHhCC---CceEEEEeCCCCCcHHHHHHHHHHcCC
Q 018252 277 SKVAYVAKELHDM---GCF---EISLGDTIGVGTPGTVVPMLEAVMAVVP---VEKLAVHLHDTYGQSLPNILISLQVSP 347 (359)
Q Consensus 277 e~l~~~a~~l~~~---Gad---~I~L~DT~G~~~P~~v~~lv~~l~~~~p---~~~L~~H~HNd~GLAlANalaAv~AGa 347 (359)
+++.++++.+.++ |++ +|+||||+|+++|.+++++++.+++.+| .++|++|+|||+|||+||+++|+++||
T Consensus 156 ~~l~~~~~~~~~~~~~g~~~~~~i~laDTvG~a~P~~v~~~~~~l~~~~~~~~~~~~~~H~Hnd~G~a~AN~laA~~aG~ 235 (284)
T cd07942 156 DFALEVCEAVIDVWQPTPENKIILNLPATVEVATPNVYADQIEWFCRNLSRRESVIISLHPHNDRGTGVAAAELALLAGA 235 (284)
T ss_pred HHHHHHHHHHHHhhcCCCCcceEEEccccccccCHHHHHHHHHHHHHhcCCCCCceEEEEecCCCchHHHHHHHHHHhCC
Confidence 9999999999887 544 9999999999999999999999999886 456999999999999999999999999
Q ss_pred CEEeceee
Q 018252 348 MHAKPCFT 355 (359)
Q Consensus 348 ~~ID~tl~ 355 (359)
++||+|+.
T Consensus 236 ~~id~~~~ 243 (284)
T cd07942 236 DRVEGTLF 243 (284)
T ss_pred CEEEeeCc
Confidence 99999985
No 16
>PRK03739 2-isopropylmalate synthase; Validated
Probab=100.00 E-value=6e-47 Score=393.16 Aligned_cols=250 Identities=17% Similarity=0.130 Sum_probs=217.4
Q ss_pred cccccccccccccccCccchhhhhhhhhcCCCCccEEEeCCCcccCCCCCCCCCHHHHHHHHHHHHhCCCCEEEEeccCC
Q 018252 93 HKMFGSACDIYNSNCNDKDIRDITNKFLKGIPRFVKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVS 172 (359)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~V~I~D~TLRDG~Q~~~~~~~~~~k~~ia~~L~~aGv~~IEvG~fvs 172 (359)
.||+..|+. | ...+...|+||++.++ +++.|+|+|||||+|+++..|++++|++|+++|+++||+.||+||
T Consensus 3 ~~~~~~~~~-~--~~~~~~~~~~~~~~~~---~~~~i~dttLRDGeQ~~gv~~s~~~Ki~ia~~L~~~GV~~IE~Gf--- 73 (552)
T PRK03739 3 KMPATKYRP-F--PPVDLPDRTWPSKTIT---KAPIWCSVDLRDGNQALIEPMSPERKLRMFDLLVKIGFKEIEVGF--- 73 (552)
T ss_pred CCchhhcCC-C--CCCCCCCCCCCCcccC---CCCeEeeCCCCCcCcCCCCCCCHHHHHHHHHHHHHcCCCEEEEEC---
Confidence 467778877 3 5677899999999866 555999999999999999999999999999999999999999997
Q ss_pred CCCcCCCCCHH-HHHHHh-hh-c--CCCeEEEEeCCh-HhHHHHHHc--CCC--EEEEecCCchHHHHhhhcCCHHHHHH
Q 018252 173 PKWVPQLADAR-DVMEAV-RD-L--EGARLPVLTPNL-KGFEAAIAA--GAK--EVAIFASASEAFSKSNINCSIEDSLV 242 (359)
Q Consensus 173 pk~vPq~~D~~-ev~~~l-~~-~--~~~~l~~l~~n~-~gie~a~~a--Gv~--~V~i~~s~S~~~~~~n~~~t~~e~l~ 242 (359)
|++.+.+ ++++.+ +. . +++.+.+|+|+. .++++|+++ |++ .|++++++|+.|.+.|+|+|++++++
T Consensus 74 ----P~~s~~e~e~v~~i~~~~~~~~~~~i~~l~r~~~~di~~a~~a~~~~~~~~v~i~~~~Sd~h~~~~l~~t~ee~l~ 149 (552)
T PRK03739 74 ----PSASQTDFDFVRELIEEGLIPDDVTIQVLTQAREHLIERTFEALEGAKRAIVHLYNSTSPLQRRVVFGKDRDGIKA 149 (552)
T ss_pred ----CCcChHHHHHHHHHHHhcCCCCCCEEEEEeccchhHHHHHHHHhcCCCCCEEEEEEcCCHHHHHHHhCCCHHHHHH
Confidence 3445544 555555 43 2 479999999987 469999987 444 79999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCcEE-EEEeeeecCCCCCCCCHHHHHHHHHHHHH---CCcC---EEEEcCCCCCCcHHHHHHHHHHH
Q 018252 243 RYRAVAHAAKVLSIPVR-GYVSCVVGCPVEGAIPPSKVAYVAKELHD---MGCF---EISLGDTIGVGTPGTVVPMLEAV 315 (359)
Q Consensus 243 ~i~~~i~~Ak~~G~~V~-~~is~~fg~~~~~r~~~e~l~~~a~~l~~---~Gad---~I~L~DT~G~~~P~~v~~lv~~l 315 (359)
++.+++++|+++|.... ..+.+.|+.+|++|++++|+.++++.+.+ +|++ +|+||||+|+++|.+++++++.+
T Consensus 150 ~~~~~v~~a~~~~~~~~~~~~~v~f~~EDasR~d~~~l~~~~~~a~~~~~ag~~~~~~i~l~DTvG~~~P~~~~~~v~~l 229 (552)
T PRK03739 150 IAVDGARLVKELAAKYPETEWRFEYSPESFTGTELDFALEVCDAVIDVWQPTPERKVILNLPATVEMSTPNVYADQIEWM 229 (552)
T ss_pred HHHHHHHHHHHhcccccCceeEEEEecccCCCCCHHHHHHHHHHHHHhhcCCCCceeEEEeccCCcCcCHHHHHHHHHHH
Confidence 99999999999985321 11334699999999999999999999886 5655 59999999999999999999999
Q ss_pred HHhCC---CceEEEEeCCCCCcHHHHHHHHHHcCCCEEeceee
Q 018252 316 MAVVP---VEKLAVHLHDTYGQSLPNILISLQVSPMHAKPCFT 355 (359)
Q Consensus 316 ~~~~p---~~~L~~H~HNd~GLAlANalaAv~AGa~~ID~tl~ 355 (359)
++.+| +++|++|||||+|||+||+++|+++||++||+|++
T Consensus 230 ~~~~~~~~~~~i~vH~HND~GlAvANslaAv~aGa~~v~gtvn 272 (552)
T PRK03739 230 CRNLARRDSVILSLHPHNDRGTGVAAAELALMAGADRVEGCLF 272 (552)
T ss_pred HHhCCcccCceEEEEeCCCCChHHHHHHHHHHhCCCEEEeeCC
Confidence 99987 68999999999999999999999999999999985
No 17
>TIGR00973 leuA_bact 2-isopropylmalate synthase, bacterial type. A larger family of homologous proteins includes homocitrate synthase, distinct lineages of 2-isopropylmalate synthase, several distinct, uncharacterized, orthologous sets in the Archaea, and other related enzymes. This model describes a family of 2-isopropylmalate synthases found primarily in Bacteria. The homologous families in the Archaea may represent isozymes and/or related enzymes.
Probab=100.00 E-value=7.6e-47 Score=388.37 Aligned_cols=219 Identities=21% Similarity=0.270 Sum_probs=204.3
Q ss_pred ccEEEeCCCcccCCCCCCCCCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcCCCCCHHHHHHHhhhcCCCeEEEEeC-Ch
Q 018252 126 FVKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPVLTP-NL 204 (359)
Q Consensus 126 ~V~I~D~TLRDG~Q~~~~~~~~~~k~~ia~~L~~aGv~~IEvG~fvspk~vPq~~D~~ev~~~l~~~~~~~l~~l~~-n~ 204 (359)
+|+|+|||||||+|+++..|++++|++|++.|+++||++||+|+|++++ .|.+.+...++..++.++.+|+| +.
T Consensus 1 ~v~I~DtTLRDG~Q~~g~~~s~e~K~~ia~~L~~~GV~~IEvG~p~~s~-----~d~e~v~~i~~~~~~~~i~al~r~~~ 75 (494)
T TIGR00973 1 RIIIFDTTLRDGEQSPGASLTVEEKLQIALALERLGVDIIEAGFPVSSP-----GDFEAVQRIARTVKNPRVCGLARCVE 75 (494)
T ss_pred CeEEEECCCCccCcCCCCCcCHHHHHHHHHHHHHcCCCEEEEECCCCCH-----HHHHHHHHHHHhCCCCEEEEEcCCCH
Confidence 4799999999999999999999999999999999999999999987653 57777755556678899999999 57
Q ss_pred HhHHHHHHc----CCCEEEEecCCchHHHHhhhcCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHH
Q 018252 205 KGFEAAIAA----GAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVA 280 (359)
Q Consensus 205 ~gie~a~~a----Gv~~V~i~~s~S~~~~~~n~~~t~~e~l~~i~~~i~~Ak~~G~~V~~~is~~fg~~~~~r~~~e~l~ 280 (359)
+++++++++ +.+.|+++.++|+.|.+.++|+|++++++++.+++++|+++|..| .|+++|++|++++|+.
T Consensus 76 ~did~a~~al~~~~~~~v~i~~~~S~~h~~~~l~~s~~e~l~~~~~~v~~a~~~g~~v------~f~~Ed~~r~d~~~l~ 149 (494)
T TIGR00973 76 KDIDAAAEALKPAEKFRIHTFIATSPIHLEHKLKMTRDEVLERAVGMVKYAKNFTDDV------EFSCEDAGRTEIPFLA 149 (494)
T ss_pred HhHHHHHHhccccCCCEEEEEEccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeE------EEEcCCCCCCCHHHHH
Confidence 999999987 678899999999999999999999999999999999999999976 5889999999999999
Q ss_pred HHHHHHHHCCcCEEEEcCCCCCCcHHHHHHHHHHHHHhCC---CceEEEEeCCCCCcHHHHHHHHHHcCCCEEeceee
Q 018252 281 YVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVP---VEKLAVHLHDTYGQSLPNILISLQVSPMHAKPCFT 355 (359)
Q Consensus 281 ~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~lv~~l~~~~p---~~~L~~H~HNd~GLAlANalaAv~AGa~~ID~tl~ 355 (359)
++++++.++|+++|+||||+|.++|.+++++++.+++++| .++|++|+|||+|||+||+++|+++||++||+|+.
T Consensus 150 ~~~~~~~~~Ga~~i~l~DTvG~~~P~~~~~~i~~l~~~~~~~~~v~l~~H~HND~GlAvANalaAv~aGa~~vd~tv~ 227 (494)
T TIGR00973 150 RIVEAAINAGATTINIPDTVGYALPAEYGNLIKGLRENVPNIDKAILSVHCHNDLGLAVANSLAAVQNGARQVECTIN 227 (494)
T ss_pred HHHHHHHHcCCCEEEeCCCCCCCCHHHHHHHHHHHHHhhccccCceEEEEeCCCCChHHHHHHHHHHhCCCEEEEEee
Confidence 9999999999999999999999999999999999999987 36799999999999999999999999999999985
No 18
>PLN02321 2-isopropylmalate synthase
Probab=100.00 E-value=6.2e-47 Score=396.01 Aligned_cols=220 Identities=21% Similarity=0.301 Sum_probs=200.5
Q ss_pred CCccEEEeCCCcccCCCCCCCCCHHHHHHHHHHHHhCCCCEEEEecc-CCCCCcCCCCCHHHHHHHhhhcCC--------
Q 018252 124 PRFVKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSF-VSPKWVPQLADARDVMEAVRDLEG-------- 194 (359)
Q Consensus 124 p~~V~I~D~TLRDG~Q~~~~~~~~~~k~~ia~~L~~aGv~~IEvG~f-vspk~vPq~~D~~ev~~~l~~~~~-------- 194 (359)
|++|+|+|||||||+|+++..|++++|++|+++|+++||+.||+|+| ++|+ |.+++....+..++
T Consensus 84 ~~~V~I~DtTLRDGeQ~~g~~~s~eeKl~Ia~~L~~lGVd~IEvGfP~~Sp~------D~e~vr~i~~~~~~~v~~~~~v 157 (632)
T PLN02321 84 PNYVRIFDTTLRDGEQSPGATLTSKEKLDIARQLAKLGVDIIEAGFPIASPD------DLEAVKTIAKEVGNEVDEDGYV 157 (632)
T ss_pred CCceEEEECCCCccccCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCcCCCcc------HHHHHHHHHHhcccCCCccccc
Confidence 78999999999999999999999999999999999999999999995 6663 77775555444333
Q ss_pred CeEEEEeC-ChHhHHHHHHc--CC--CEEEEecCCchHHHHhhhcCCHHHHHHHHHHHHHHHHhCCCc-EEEEEeeeecC
Q 018252 195 ARLPVLTP-NLKGFEAAIAA--GA--KEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIP-VRGYVSCVVGC 268 (359)
Q Consensus 195 ~~l~~l~~-n~~gie~a~~a--Gv--~~V~i~~s~S~~~~~~n~~~t~~e~l~~i~~~i~~Ak~~G~~-V~~~is~~fg~ 268 (359)
..+.+|++ +.+|+++++++ ++ .+|++++++|+.|.+.|+|+|++|+++++.+++++||++|.. | .|++
T Consensus 158 ~~i~a~~ra~~~dId~A~~al~~a~~~~I~i~~stSd~h~~~~l~~t~ee~l~~~~~~V~~Ak~~G~~~v------~fs~ 231 (632)
T PLN02321 158 PVICGLSRCNKKDIDAAWEAVKHAKRPRIHTFIATSEIHMEHKLRKTPDEVVEIARDMVKYARSLGCEDV------EFSP 231 (632)
T ss_pred eeeeeehhccHHhHHHHHHHhcCCCCCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCceE------EEec
Confidence 56777888 67999999998 44 379999999999999999999999999999999999999985 4 5899
Q ss_pred CCCCCCCHHHHHHHHHHHHHCCcCEEEEcCCCCCCcHHHHHHHHHHHHHhCCC---ceEEEEeCCCCCcHHHHHHHHHHc
Q 018252 269 PVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPV---EKLAVHLHDTYGQSLPNILISLQV 345 (359)
Q Consensus 269 ~~~~r~~~e~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~lv~~l~~~~p~---~~L~~H~HNd~GLAlANalaAv~A 345 (359)
||++|++++|+.++++++.++|+++|+||||+|+++|.+++++++.+++++|. ++|++|||||+|||+||+++|+++
T Consensus 232 EDa~rtd~d~l~~~~~~a~~aGa~~I~L~DTvG~~~P~~v~~li~~l~~~~~~~~~v~i~vH~HND~GlAvANslaAv~A 311 (632)
T PLN02321 232 EDAGRSDPEFLYRILGEVIKAGATTLNIPDTVGYTLPSEFGQLIADIKANTPGIENVIISTHCQNDLGLSTANTLAGAHA 311 (632)
T ss_pred ccCCCCCHHHHHHHHHHHHHcCCCEEEecccccCCCHHHHHHHHHHHHHhcCCCCCceEEEEeCCCCCHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999874 669999999999999999999999
Q ss_pred CCCEEeceee
Q 018252 346 SPMHAKPCFT 355 (359)
Q Consensus 346 Ga~~ID~tl~ 355 (359)
||++||+|+.
T Consensus 312 GA~~Vd~Tin 321 (632)
T PLN02321 312 GARQVEVTIN 321 (632)
T ss_pred CCCEEEEecc
Confidence 9999999985
No 19
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=100.00 E-value=1.1e-46 Score=374.25 Aligned_cols=217 Identities=21% Similarity=0.246 Sum_probs=199.9
Q ss_pred cEEEeCCCcccCCCCCCCCCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcCCCCCHHHHHHHhhhcCCCeEEEEeC-ChH
Q 018252 127 VKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPVLTP-NLK 205 (359)
Q Consensus 127 V~I~D~TLRDG~Q~~~~~~~~~~k~~ia~~L~~aGv~~IEvG~fvspk~vPq~~D~~ev~~~l~~~~~~~l~~l~~-n~~ 205 (359)
|.|+|||||||+|+++..|++++|++|++.|+++||+.||+|+|++++ .|.+.+....+..++.++.+|++ +.+
T Consensus 1 i~i~DtTLRDG~Q~~~~~~s~~~k~~ia~~L~~~Gv~~IEvG~p~~~~-----~~~e~i~~i~~~~~~~~v~~~~r~~~~ 75 (363)
T TIGR02090 1 VYIFDTTLRDGEQTPGVSLTVEQKVEIARKLDELGVDVIEAGFPIASE-----GEFEAIKKISQEGLNAEICSLARALKK 75 (363)
T ss_pred CEEEeCCCCCcCCCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCCCh-----HHHHHHHHHHhcCCCcEEEEEcccCHH
Confidence 689999999999999999999999999999999999999999987653 34444444444567899999998 679
Q ss_pred hHHHHHHcCCCEEEEecCCchHHHHhhhcCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHH
Q 018252 206 GFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKE 285 (359)
Q Consensus 206 gie~a~~aGv~~V~i~~s~S~~~~~~n~~~t~~e~l~~i~~~i~~Ak~~G~~V~~~is~~fg~~~~~r~~~e~l~~~a~~ 285 (359)
++++++++|++.|++++++|+.|.+.|+|++++++++++.+++++||++|++|.++ .+++++++++++.+++++
T Consensus 76 di~~a~~~g~~~i~i~~~~Sd~~~~~~~~~~~~~~~~~~~~~i~~ak~~G~~v~~~------~eda~r~~~~~l~~~~~~ 149 (363)
T TIGR02090 76 DIDKAIDCGVDSIHTFIATSPIHLKYKLKKSRDEVLEKAVEAVEYAKEHGLIVEFS------AEDATRTDIDFLIKVFKR 149 (363)
T ss_pred HHHHHHHcCcCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEEE------EeecCCCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999988543 357789999999999999
Q ss_pred HHHCCcCEEEEcCCCCCCcHHHHHHHHHHHHHhCCCceEEEEeCCCCCcHHHHHHHHHHcCCCEEeceee
Q 018252 286 LHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQVSPMHAKPCFT 355 (359)
Q Consensus 286 l~~~Gad~I~L~DT~G~~~P~~v~~lv~~l~~~~p~~~L~~H~HNd~GLAlANalaAv~AGa~~ID~tl~ 355 (359)
+.++|+++|+|+||+|.++|.+++++++.+++.++ ++|++|+|||+|||+||+++|+++||++||+|+.
T Consensus 150 ~~~~g~~~i~l~DT~G~~~P~~v~~li~~l~~~~~-~~l~~H~Hnd~GlA~AN~laA~~aGa~~vd~s~~ 218 (363)
T TIGR02090 150 AEEAGADRINIADTVGVLTPQKMEELIKKLKENVK-LPISVHCHNDFGLATANSIAGVKAGAEQVHVTVN 218 (363)
T ss_pred HHhCCCCEEEEeCCCCccCHHHHHHHHHHHhcccC-ceEEEEecCCCChHHHHHHHHHHCCCCEEEEEee
Confidence 99999999999999999999999999999999988 7999999999999999999999999999999985
No 20
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=100.00 E-value=6.7e-46 Score=349.84 Aligned_cols=222 Identities=36% Similarity=0.508 Sum_probs=210.2
Q ss_pred EeCCCcccCCCCCCCCCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcCCCCCHHHHHHHhhh-cCCCeEEEEeCC-hHhH
Q 018252 130 VEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRD-LEGARLPVLTPN-LKGF 207 (359)
Q Consensus 130 ~D~TLRDG~Q~~~~~~~~~~k~~ia~~L~~aGv~~IEvG~fvspk~vPq~~D~~ev~~~l~~-~~~~~l~~l~~n-~~gi 207 (359)
+|||||||+|+++..|++++|+++++.|+++||++||+|++.+++++|++.|..++++.+++ .++.++.+|+++ .+++
T Consensus 1 ~D~tlRDG~q~~~~~~s~e~~~~i~~~L~~~GV~~IEvg~~~~~~~~p~~~~~~~~i~~l~~~~~~~~~~~l~~~~~~~i 80 (265)
T cd03174 1 TDTTLRDGLQSEGATFSTEDKLEIAEALDEAGVDSIEVGSGASPKAVPQMEDDWEVLRAIRKLVPNVKLQALVRNREKGI 80 (265)
T ss_pred CCCCCCCcccCCCCCCCHHHHHHHHHHHHHcCCCEEEeccCcCccccccCCCHHHHHHHHHhccCCcEEEEEccCchhhH
Confidence 59999999999999999999999999999999999999999988889999998887777775 458999999998 7999
Q ss_pred HHHHHcCCCEEEEecCCchHHHHhhhcCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHH
Q 018252 208 EAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELH 287 (359)
Q Consensus 208 e~a~~aGv~~V~i~~s~S~~~~~~n~~~t~~e~l~~i~~~i~~Ak~~G~~V~~~is~~fg~~~~~r~~~e~l~~~a~~l~ 287 (359)
+++.++|++.|+++.+.|+.|.+.|++++.++.++.+.+.+++++++|+++.++++.++.| .++++++.++++.+.
T Consensus 81 ~~a~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~~~~----~~~~~~l~~~~~~~~ 156 (265)
T cd03174 81 ERALEAGVDEVRIFDSASETHSRKNLNKSREEDLENAEEAIEAAKEAGLEVEGSLEDAFGC----KTDPEYVLEVAKALE 156 (265)
T ss_pred HHHHhCCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeecCC----CCCHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999888766544 489999999999999
Q ss_pred HCCcCEEEEcCCCCCCcHHHHHHHHHHHHHhCCCceEEEEeCCCCCcHHHHHHHHHHcCCCEEeceee
Q 018252 288 DMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQVSPMHAKPCFT 355 (359)
Q Consensus 288 ~~Gad~I~L~DT~G~~~P~~v~~lv~~l~~~~p~~~L~~H~HNd~GLAlANalaAv~AGa~~ID~tl~ 355 (359)
++|++.|+|+||+|.++|.++.++++.+++.+|+++|++|+|||+|||+||+++|+++||++||+|+.
T Consensus 157 ~~g~~~i~l~Dt~G~~~P~~v~~li~~l~~~~~~~~~~~H~Hn~~gla~an~laA~~aG~~~id~s~~ 224 (265)
T cd03174 157 EAGADEISLKDTVGLATPEEVAELVKALREALPDVPLGLHTHNTLGLAVANSLAALEAGADRVDGSVN 224 (265)
T ss_pred HcCCCEEEechhcCCcCHHHHHHHHHHHHHhCCCCeEEEEeCCCCChHHHHHHHHHHcCCCEEEeccc
Confidence 99999999999999999999999999999999988999999999999999999999999999999985
No 21
>COG0119 LeuA Isopropylmalate/homocitrate/citramalate synthases [Amino acid transport and metabolism]
Probab=100.00 E-value=2.4e-46 Score=375.64 Aligned_cols=220 Identities=25% Similarity=0.304 Sum_probs=198.9
Q ss_pred CccEEEeCCCcccCCCCCCCCCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcCCCCCHHHHHHHhhhc---CCCeEEEEe
Q 018252 125 RFVKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDL---EGARLPVLT 201 (359)
Q Consensus 125 ~~V~I~D~TLRDG~Q~~~~~~~~~~k~~ia~~L~~aGv~~IEvG~fvspk~vPq~~D~~ev~~~l~~~---~~~~l~~l~ 201 (359)
++|.|.|+|||||+|+++..|++++|++|+++|+++|++.||+|+|+++++ |.+.+....... ..+++.++.
T Consensus 1 ~~v~i~DtTLRDG~Q~~g~~~s~e~Ki~Ia~~Ld~lGv~~IE~g~p~~s~~-----~~~~~~~i~~~~~~~~~~~~~~~~ 75 (409)
T COG0119 1 KKVIIFDTTLRDGEQAPGVSFSVEEKIRIAKALDDLGVDYIEAGFPVASPG-----DFEFVRAIAEKAGLFICALIAALA 75 (409)
T ss_pred CCcEEEeCCCCcCCcCCCCcCCHHHHHHHHHHHHHcCCCEEEEeCCcCChh-----hHHHHHHHHHhcCcccchhhhhhH
Confidence 468999999999999999999999999999999999999999999987653 444433333121 256777888
Q ss_pred CCh-HhHHHHHHcCCCEEEEecCCchHHHHhhhcCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHH
Q 018252 202 PNL-KGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVA 280 (359)
Q Consensus 202 ~n~-~gie~a~~aGv~~V~i~~s~S~~~~~~n~~~t~~e~l~~i~~~i~~Ak~~G~~V~~~is~~fg~~~~~r~~~e~l~ 280 (359)
++. ++++.++++|++.|++|.++|+.|.+.++++|+++.++.+.+++++|+++|++++ |+++++++++++++.
T Consensus 76 ~~~~~~~ea~~~a~~~~i~if~~tSd~h~~~~~~~t~~e~l~~~~~~v~ya~~~g~~~~------~~~Ed~~rt~~~~l~ 149 (409)
T COG0119 76 RAIKRDIEALLEAGVDRIHIFIATSDLHLRYKLKKTREEVLERAVDAVEYARDHGLEVR------FSAEDATRTDPEFLA 149 (409)
T ss_pred HhHHhhHHHHHhCCCCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEE------EEeeccccCCHHHHH
Confidence 866 5999999999999999999999999999999999999999999999999998885 445677899999999
Q ss_pred HHHHHHHHCCcCEEEEcCCCCCCcHHHHHHHHHHHHHhCC-CceEEEEeCCCCCcHHHHHHHHHHcCCCEEeceee
Q 018252 281 YVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVP-VEKLAVHLHDTYGQSLPNILISLQVSPMHAKPCFT 355 (359)
Q Consensus 281 ~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~lv~~l~~~~p-~~~L~~H~HNd~GLAlANalaAv~AGa~~ID~tl~ 355 (359)
++++.+.++|+++|+||||+|+++|.+++++++.+++.+| .++|++|||||+|||+||+++|+++||++||+|++
T Consensus 150 ~~~~~~~~~ga~~i~l~DTvG~~~P~~~~~~i~~l~~~v~~~~~l~~H~HnD~G~AvANslaAv~aGa~~v~~Tvn 225 (409)
T COG0119 150 EVVKAAIEAGADRINLPDTVGVATPNEVADIIEALKANVPNKVILSVHCHNDLGMAVANSLAAVEAGADQVEGTVN 225 (409)
T ss_pred HHHHHHHHcCCcEEEECCCcCccCHHHHHHHHHHHHHhCCCCCeEEEEecCCcchHHHHHHHHHHcCCcEEEEecc
Confidence 9999999999999999999999999999999999999998 58999999999999999999999999999999985
No 22
>PRK09389 (R)-citramalate synthase; Provisional
Probab=100.00 E-value=3.9e-46 Score=382.46 Aligned_cols=218 Identities=18% Similarity=0.253 Sum_probs=201.7
Q ss_pred ccEEEeCCCcccCCCCCCCCCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcCCCCCHHHHHHHhhhcCCCeEEEEeCC-h
Q 018252 126 FVKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPVLTPN-L 204 (359)
Q Consensus 126 ~V~I~D~TLRDG~Q~~~~~~~~~~k~~ia~~L~~aGv~~IEvG~fvspk~vPq~~D~~ev~~~l~~~~~~~l~~l~~n-~ 204 (359)
+|+|+|||||||+|+++..|++++|++|++.|+++||+.||+|+|++++ .|.+.+....+...++++.+|++. .
T Consensus 2 ~i~I~DtTLRDG~Q~~g~~~s~e~K~~ia~~L~~~Gv~~IE~G~p~~~~-----~d~e~v~~i~~~~~~~~i~a~~r~~~ 76 (488)
T PRK09389 2 MVRILDTTLRDGEQTPGVSLTPEEKLEIARKLDELGVDVIEAGSAITSE-----GEREAIKAVTDEGLNAEICSFARAVK 76 (488)
T ss_pred ceEEEeCCCCCcCCCCCCCcCHHHHHHHHHHHHHcCCCEEEEeCCcCCH-----HHHHHHHHHHhcCCCcEEEeecccCH
Confidence 4899999999999999999999999999999999999999999987653 466665555555567999999985 5
Q ss_pred HhHHHHHHcCCCEEEEecCCchHHHHhhhcCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHH
Q 018252 205 KGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAK 284 (359)
Q Consensus 205 ~gie~a~~aGv~~V~i~~s~S~~~~~~n~~~t~~e~l~~i~~~i~~Ak~~G~~V~~~is~~fg~~~~~r~~~e~l~~~a~ 284 (359)
+|+++++++|++.|+++.++|+.|.+.++++|++++++++.+++++||++|+.|. |+.+++++++++|+.++++
T Consensus 77 ~di~~a~~~g~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~~g~~v~------~~~ed~~r~~~~~l~~~~~ 150 (488)
T PRK09389 77 VDIDAALECDVDSVHLVVPTSDLHIEYKLKKTREEVLETAVEAVEYAKDHGLIVE------LSGEDASRADLDFLKELYK 150 (488)
T ss_pred HHHHHHHhCCcCEEEEEEccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCEEE------EEEeeCCCCCHHHHHHHHH
Confidence 8999999999999999999999999999999999999999999999999999885 4455788999999999999
Q ss_pred HHHHCCcCEEEEcCCCCCCcHHHHHHHHHHHHHhCCCceEEEEeCCCCCcHHHHHHHHHHcCCCEEeceee
Q 018252 285 ELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQVSPMHAKPCFT 355 (359)
Q Consensus 285 ~l~~~Gad~I~L~DT~G~~~P~~v~~lv~~l~~~~p~~~L~~H~HNd~GLAlANalaAv~AGa~~ID~tl~ 355 (359)
++.++|+++|+||||+|.++|.+++++++.+++.++ ++|++|+|||+|||+||+++|+++||++||+|+.
T Consensus 151 ~~~~~Ga~~i~l~DTvG~~~P~~~~~lv~~l~~~~~-v~l~~H~HND~GlAvANalaAv~aGa~~Vd~Ti~ 220 (488)
T PRK09389 151 AGIEAGADRICFCDTVGILTPEKTYELFKRLSELVK-GPVSIHCHNDFGLAVANTLAALAAGADQVHVTIN 220 (488)
T ss_pred HHHhCCCCEEEEecCCCCcCHHHHHHHHHHHHhhcC-CeEEEEecCCccHHHHHHHHHHHcCCCEEEEEcc
Confidence 999999999999999999999999999999999877 7999999999999999999999999999999985
No 23
>cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of in
Probab=100.00 E-value=1.2e-45 Score=353.77 Aligned_cols=217 Identities=20% Similarity=0.235 Sum_probs=193.9
Q ss_pred EEeCCCcccCCCCCCCCCHHHHHHHHHHHHhCCCCEEEEec-cCCCCCcCCCCCHHHHHHHhhhc--CCCeEEEEeC---
Q 018252 129 IVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATS-FVSPKWVPQLADARDVMEAVRDL--EGARLPVLTP--- 202 (359)
Q Consensus 129 I~D~TLRDG~Q~~~~~~~~~~k~~ia~~L~~aGv~~IEvG~-fvspk~vPq~~D~~ev~~~l~~~--~~~~l~~l~~--- 202 (359)
|+|||||||+|++++.|++++|++|+++|+++||+.||+|+ +++|+ +.+. ++.+.+. +++++.++++
T Consensus 1 i~D~TLRDG~Q~~~~~~s~e~k~~i~~~L~~~Gv~~IE~G~~~~~~~------~~~~-~~~~~~~~~~~~~~~~~~~~~~ 73 (273)
T cd07941 1 IYDTTLRDGTQGEGISFSVEDKLRIARKLDELGVDYIEGGWPGSNPK------DTEF-FARAKKLKLKHAKLAAFGSTRR 73 (273)
T ss_pred CCcCCCCCcCCCCCCCCCHHHHHHHHHHHHHcCCCEEEecCCcCCHH------HHHH-HHHHHHcCCCCcEEEEEecccc
Confidence 68999999999999999999999999999999999999999 45553 3222 3444332 4778887764
Q ss_pred ------ChHhHHHHHHcCCCEEEEecCCchHHHHhhhcCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCH
Q 018252 203 ------NLKGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPP 276 (359)
Q Consensus 203 ------n~~gie~a~~aGv~~V~i~~s~S~~~~~~n~~~t~~e~l~~i~~~i~~Ak~~G~~V~~~is~~fg~~~~~r~~~ 276 (359)
+.++++.++++|++.|+++.++|+.|.+.++|+++++.++.+.+++++||++|++|.++.+ .| .+++++++
T Consensus 74 ~~i~~~~~~~~~~a~~~g~~~i~i~~~~sd~~~~~~~~~~~~~~~~~~~~~i~~ak~~G~~v~~~~~-~~--~d~~~~~~ 150 (273)
T cd07941 74 AGVKAEEDPNLQALLEAGTPVVTIFGKSWDLHVTEALGTTLEENLAMIRDSVAYLKSHGREVIFDAE-HF--FDGYKANP 150 (273)
T ss_pred cCCCccchHHHHHHHhCCCCEEEEEEcCCHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCeEEEeEE-ec--cccCCCCH
Confidence 2347899999999999999999999999999999999999999999999999999987743 44 34568999
Q ss_pred HHHHHHHHHHHHCCcCEEEEcCCCCCCcHHHHHHHHHHHHHhCCCceEEEEeCCCCCcHHHHHHHHHHcCCCEEeceee
Q 018252 277 SKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQVSPMHAKPCFT 355 (359)
Q Consensus 277 e~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~lv~~l~~~~p~~~L~~H~HNd~GLAlANalaAv~AGa~~ID~tl~ 355 (359)
+++.++++++.++|+++|+|+||+|.++|.+++++++.+++++|+++|++|+|||+|||+||+++|+++||++||+|+.
T Consensus 151 ~~~~~~~~~~~~~g~~~i~l~DT~G~~~P~~v~~lv~~l~~~~~~~~l~~H~Hnd~Gla~An~laA~~aGa~~id~s~~ 229 (273)
T cd07941 151 EYALATLKAAAEAGADWLVLCDTNGGTLPHEIAEIVKEVRERLPGVPLGIHAHNDSGLAVANSLAAVEAGATQVQGTIN 229 (273)
T ss_pred HHHHHHHHHHHhCCCCEEEEecCCCCCCHHHHHHHHHHHHHhCCCCeeEEEecCCCCcHHHHHHHHHHcCCCEEEEecc
Confidence 9999999999999999999999999999999999999999999988999999999999999999999999999999985
No 24
>cd07947 DRE_TIM_Re_CS Clostridium kluyveri Re-citrate synthase and related proteins, catalytic TIM barrel domain. Re-citrate synthase (Re-CS) is a Clostridium kluyveri enzyme that converts acetyl-CoA and oxaloacetate to citrate. In most organisms, this reaction is catalyzed by Si-citrate synthase which is Si-face stereospecific with respect to C-2 of oxaloacetate, and phylogenetically unrelated to Re-citrate synthase. Re-citrate synthase is also found in a few other strictly anaerobic organisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with
Probab=100.00 E-value=1.6e-45 Score=354.01 Aligned_cols=215 Identities=19% Similarity=0.184 Sum_probs=191.4
Q ss_pred cEEEeCCCcccCCCCCCCCCHHHHHHHHHHHHhCC-----CCEEEEeccCCCCCcCCCCCHHHHHHHhhhcC-CCeEEEE
Q 018252 127 VKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSG-----LPVVEATSFVSPKWVPQLADARDVMEAVRDLE-GARLPVL 200 (359)
Q Consensus 127 V~I~D~TLRDG~Q~~~~~~~~~~k~~ia~~L~~aG-----v~~IEvG~fvspk~vPq~~D~~ev~~~l~~~~-~~~l~~l 200 (359)
|+|+|||||||+|+++.. ++++|++|+++|.++| |+.||+++|++ +|.++|.+.++... ...+.+|
T Consensus 1 i~i~d~tlRDG~Q~~~~~-~~~~Kv~i~~~L~~~G~~~~~v~~IE~~s~~~-------~d~~~v~~~~~~~~~~~~v~~~ 72 (279)
T cd07947 1 IWITDTTFRDGQQARPPY-TVEQIVKIYDYLHELGGGSGVIRQTEFFLYTE-------KDREAVEACLDRGYKFPEVTGW 72 (279)
T ss_pred CEEEeCCCCCcCCCCCCC-CHHHHHHHHHHHHHcCCCCCccceEEecCcCh-------HHHHHHHHHHHcCCCCCEEEEE
Confidence 689999999999999885 9999999999999999 99999987754 58888888886532 3456665
Q ss_pred e-CChHhHHHHHHcCCCEEEEecCCchHHHHhhhcCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCH---
Q 018252 201 T-PNLKGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPP--- 276 (359)
Q Consensus 201 ~-~n~~gie~a~~aGv~~V~i~~s~S~~~~~~n~~~t~~e~l~~i~~~i~~Ak~~G~~V~~~is~~fg~~~~~r~~~--- 276 (359)
. +|.+|+++|+++|++.|++++|+|+.|.+.|+|+|++++++++.+++++||++|+.|++++ ++++|.++
T Consensus 73 ~r~~~~die~A~~~g~~~v~i~~s~S~~~~~~~~~~t~~e~l~~~~~~v~~a~~~g~~v~~~~------ed~~r~d~~~~ 146 (279)
T cd07947 73 IRANKEDLKLVKEMGLKETGILMSVSDYHIFKKLKMTREEAMEKYLEIVEEALDHGIKPRCHL------EDITRADIYGF 146 (279)
T ss_pred ecCCHHHHHHHHHcCcCEEEEEEcCCHHHHHHHhCcCHHHHHHHHHHHHHHHHHCCCeEEEEE------EcccCCCcccc
Confidence 5 5889999999999999999999999999999999999999999999999999999997666 46677776
Q ss_pred --HHHHHHHHHHHHCCcC-EEEEcCCCCCCcH-------HHHHHHHHHHHHh--CCCceEEEEeCCCCCcHHHHHHHHHH
Q 018252 277 --SKVAYVAKELHDMGCF-EISLGDTIGVGTP-------GTVVPMLEAVMAV--VPVEKLAVHLHDTYGQSLPNILISLQ 344 (359)
Q Consensus 277 --e~l~~~a~~l~~~Gad-~I~L~DT~G~~~P-------~~v~~lv~~l~~~--~p~~~L~~H~HNd~GLAlANalaAv~ 344 (359)
+++.++++.+.++|++ +|+|+||+|+++| .+++++++.+++. +|+++|++|+|||+|||+||+++|++
T Consensus 147 v~~~~~~~~~~~~~~G~~~~i~l~DTvG~a~P~~~~~~p~~v~~l~~~l~~~~~~p~~~l~~H~Hn~~Gla~AN~laA~~ 226 (279)
T cd07947 147 VLPFVNKLMKLSKESGIPVKIRLCDTLGYGVPYPGASLPRSVPKIIYGLRKDCGVPSENLEWHGHNDFYKAVANAVAAWL 226 (279)
T ss_pred hHHHHHHHHHHHHHCCCCEEEEeccCCCcCCccccccchHHHHHHHHHHHHhcCCCCceEEEEecCCCChHHHHHHHHHH
Confidence 3666777777779999 8999999999988 6899999999998 57778999999999999999999999
Q ss_pred cCCCEEeceee
Q 018252 345 VSPMHAKPCFT 355 (359)
Q Consensus 345 AGa~~ID~tl~ 355 (359)
+||++||+|+.
T Consensus 227 aG~~~vd~sv~ 237 (279)
T cd07947 227 YGASWVNCTLL 237 (279)
T ss_pred hCCCEEEEecc
Confidence 99999999985
No 25
>TIGR00977 LeuA_rel 2-isopropylmalate synthase/homocitrate synthase family protein. This model represents uncharacterized proteins related to 2-isopropylmalate synthases and homocitrate synthases but phylogenetically distint. Each species represented in the seed alignment also has a member of a known family of 2-isopropylmalate synthases.
Probab=100.00 E-value=5.7e-45 Score=376.55 Aligned_cols=221 Identities=17% Similarity=0.165 Sum_probs=197.9
Q ss_pred ccEEEeCCCcccCCCCCCCCCHHHHHHHHHHHHhCCCCEEEEecc-CCCCCcCCCCCHHHHHHHhhh-cCCCeEEEEeCC
Q 018252 126 FVKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSF-VSPKWVPQLADARDVMEAVRD-LEGARLPVLTPN 203 (359)
Q Consensus 126 ~V~I~D~TLRDG~Q~~~~~~~~~~k~~ia~~L~~aGv~~IEvG~f-vspk~vPq~~D~~ev~~~l~~-~~~~~l~~l~~n 203 (359)
+|+|+|||||||+|+++..|++++|++|++.|+++||+.||+|++ ++| .|.+.+.+..+. .+++++.+|++.
T Consensus 1 ~V~I~DtTLRDG~Q~~g~~~s~eeKl~Ia~~L~~~GVd~IE~G~p~~s~------~d~~~v~~i~~~~~~~~~i~~~~r~ 74 (526)
T TIGR00977 1 SLWLYDTTLRDGAQREGVSFSLEDKIRIAERLDDLGIHYIEGGWPGANP------KDVQFFWQLKEMNFKNAKIVAFCST 74 (526)
T ss_pred CeEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCCCh------HHHHHHHHHHHhCCCCcEEEEEeee
Confidence 479999999999999999999999999999999999999999985 555 355555555443 357899999853
Q ss_pred ---------hHhHHHHHHcCCCEEEEecCCchHHHHhhhcCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCC
Q 018252 204 ---------LKGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAI 274 (359)
Q Consensus 204 ---------~~gie~a~~aGv~~V~i~~s~S~~~~~~n~~~t~~e~l~~i~~~i~~Ak~~G~~V~~~is~~fg~~~~~r~ 274 (359)
.++++.++++|.+.|+++.++|+.|.+.+++++++++++++.+++++||++|+.|.+..+ .| .|++|+
T Consensus 75 ~r~~~~~~~d~~~ea~~~~~~~~v~i~~~~Sd~h~~~~l~~s~ee~l~~~~~~v~~ak~~g~~V~~~~e-~f--~D~~r~ 151 (526)
T TIGR00977 75 RRPHKKVEEDKMLQALIKAETPVVTIFGKSWDLHVLEALQTTLEENLAMIYDTVAYLKRQGDEVIYDAE-HF--FDGYKA 151 (526)
T ss_pred cCCCCCCchHHHHHHHhcCCCCEEEEEeCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEEee-ee--eecccC
Confidence 245889999999999999999999999999999999999999999999999999864333 23 256799
Q ss_pred CHHHHHHHHHHHHHCCcCEEEEcCCCCCCcHHHHHHHHHHHHHhCCCceEEEEeCCCCCcHHHHHHHHHHcCCCEEecee
Q 018252 275 PPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQVSPMHAKPCF 354 (359)
Q Consensus 275 ~~e~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~lv~~l~~~~p~~~L~~H~HNd~GLAlANalaAv~AGa~~ID~tl 354 (359)
+++|+.++++++.++|+++|+||||+|+++|.+++++++.+++++|..+|++|||||+|||+||+++|+++||++||+|+
T Consensus 152 ~~~~l~~~~~~a~~aGad~i~i~DTvG~~~P~~v~~li~~l~~~~~~~~i~vH~HND~GlAvANslaAv~AGA~~Vd~Ti 231 (526)
T TIGR00977 152 NPEYALATLATAQQAGADWLVLCDTNGGTLPHEISEITTKVKRSLKQPQLGIHAHNDSGTAVANSLLAVEAGATMVQGTI 231 (526)
T ss_pred CHHHHHHHHHHHHhCCCCeEEEecCCCCcCHHHHHHHHHHHHHhCCCCEEEEEECCCCChHHHHHHHHHHhCCCEEEEec
Confidence 99999999999999999999999999999999999999999999997679999999999999999999999999999998
Q ss_pred e
Q 018252 355 T 355 (359)
Q Consensus 355 ~ 355 (359)
+
T Consensus 232 n 232 (526)
T TIGR00977 232 N 232 (526)
T ss_pred c
Confidence 5
No 26
>PRK12344 putative alpha-isopropylmalate/homocitrate synthase family transferase; Provisional
Probab=100.00 E-value=1.4e-44 Score=373.92 Aligned_cols=219 Identities=20% Similarity=0.242 Sum_probs=197.5
Q ss_pred CCCccEEEeCCCcccCCCCCCCCCHHHHHHHHHHHHhCCCCEEEEecc-CCCCCcCCCCCHHHHHHHhhh--cCCCeEEE
Q 018252 123 IPRFVKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSF-VSPKWVPQLADARDVMEAVRD--LEGARLPV 199 (359)
Q Consensus 123 ~p~~V~I~D~TLRDG~Q~~~~~~~~~~k~~ia~~L~~aGv~~IEvG~f-vspk~vPq~~D~~ev~~~l~~--~~~~~l~~ 199 (359)
||++|+|+|||||||+|+++..|++++|++|++.|+++||+.||+|++ ++| .|.+. ++.+.+ ..++++.+
T Consensus 2 ~~~~V~I~DtTLRDG~Q~~g~~~s~e~Kl~ia~~L~~~Gvd~IEvG~p~as~------~d~~~-~~~i~~~~l~~~~i~~ 74 (524)
T PRK12344 2 MMERIELYDTTLRDGAQGEGISFSVEDKLRIARKLDELGVDYIEGGWPGSNP------KDTEF-FKRAKELKLKHAKLAA 74 (524)
T ss_pred CCCceEEEeCCCCCcCcCCCCCCCHHHHHHHHHHHHHcCCCEEEEcCCcCCh------hHHHH-HHHHHHhCCCCcEEEE
Confidence 578899999999999999999999999999999999999999999995 343 24443 344432 35788888
Q ss_pred EeCC---------hHhHHHHHHcCCCEEEEecCCchHHHHhhhcCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCC-
Q 018252 200 LTPN---------LKGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCP- 269 (359)
Q Consensus 200 l~~n---------~~gie~a~~aGv~~V~i~~s~S~~~~~~n~~~t~~e~l~~i~~~i~~Ak~~G~~V~~~is~~fg~~- 269 (359)
|++. .++++.++++|++.|+++.++|+.|.+.++|+++++.++++.+++++||++|++|+ |+++
T Consensus 75 ~~~~~~~~i~~~~d~~~e~~~~~g~~~i~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~~G~~v~------~~~e~ 148 (524)
T PRK12344 75 FGSTRRAGVSAEEDPNLQALLDAGTPVVTIFGKSWDLHVTEALRTTLEENLAMIRDSVAYLKAHGREVI------FDAEH 148 (524)
T ss_pred EeeccccCCCcccHHHHHHHHhCCCCEEEEEECCCHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCeEE------Ecccc
Confidence 8753 34678889999999999999999999999999999999999999999999999884 5566
Q ss_pred --CCCCCCHHHHHHHHHHHHHCCcCEEEEcCCCCCCcHHHHHHHHHHHHHhCCCceEEEEeCCCCCcHHHHHHHHHHcCC
Q 018252 270 --VEGAIPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQVSP 347 (359)
Q Consensus 270 --~~~r~~~e~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~lv~~l~~~~p~~~L~~H~HNd~GLAlANalaAv~AGa 347 (359)
++++++++++.++++++.++|+++|+|+||+|+++|.+++++++.+++++ +++|++|+|||+|||+||+++|+++||
T Consensus 149 ~~Da~r~d~~~l~~~~~~~~~~Gad~i~l~DTvG~~~P~~v~~li~~l~~~~-~v~i~~H~HND~GlA~ANslaAi~aGa 227 (524)
T PRK12344 149 FFDGYKANPEYALATLKAAAEAGADWVVLCDTNGGTLPHEVAEIVAEVRAAP-GVPLGIHAHNDSGCAVANSLAAVEAGA 227 (524)
T ss_pred ccccccCCHHHHHHHHHHHHhCCCCeEEEccCCCCcCHHHHHHHHHHHHHhc-CCeEEEEECCCCChHHHHHHHHHHhCC
Confidence 67899999999999999999999999999999999999999999999998 479999999999999999999999999
Q ss_pred CEEeceee
Q 018252 348 MHAKPCFT 355 (359)
Q Consensus 348 ~~ID~tl~ 355 (359)
++||+|+.
T Consensus 228 ~~Vd~Tl~ 235 (524)
T PRK12344 228 RQVQGTIN 235 (524)
T ss_pred CEEEEecc
Confidence 99999985
No 27
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=100.00 E-value=1.1e-43 Score=337.98 Aligned_cols=209 Identities=21% Similarity=0.271 Sum_probs=186.4
Q ss_pred cEEEeCCCcccCCCCCCCCCHHHHHHHHHHHHhCCCCEEEEecc-----CCCCCcCCCCCHHHHHHHh-hhcCCCeEEEE
Q 018252 127 VKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSF-----VSPKWVPQLADARDVMEAV-RDLEGARLPVL 200 (359)
Q Consensus 127 V~I~D~TLRDG~Q~~~~~~~~~~k~~ia~~L~~aGv~~IEvG~f-----vspk~vPq~~D~~ev~~~l-~~~~~~~l~~l 200 (359)
|+|+|||||||+|.+++.|++++|+++++.|+++||+.||+|+. ++.++.|+..+..+.++.+ +..+++++.++
T Consensus 1 i~i~D~TlRDG~Q~~~~~~~~~~k~~i~~~L~~~Gv~~iEvg~~~~~~~~~~~~~~~~~~~~e~i~~~~~~~~~~~~~~~ 80 (263)
T cd07943 1 VYIHDVTLRDGMHAVRHQFTLEQVRAIARALDAAGVPLIEVGHGDGLGGSSLNYGFAAHTDEEYLEAAAEALKQAKLGVL 80 (263)
T ss_pred CEEEeCCCCcCcccCCeecCHHHHHHHHHHHHHcCCCEEEeecCCCCCCcccccCCCCCChHHHHHHHHHhccCCEEEEE
Confidence 68999999999999999999999999999999999999999953 2334456666766666666 45688999988
Q ss_pred e----CChHhHHHHHHcCCCEEEEecCCchHHHHhhhcCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCH
Q 018252 201 T----PNLKGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPP 276 (359)
Q Consensus 201 ~----~n~~gie~a~~aGv~~V~i~~s~S~~~~~~n~~~t~~e~l~~i~~~i~~Ak~~G~~V~~~is~~fg~~~~~r~~~ 276 (359)
+ .+.+++++++++|++.|+++.+.|+.+ .+.+++++||++|+++.++++. .+++++
T Consensus 81 ~~~~~~~~~~i~~a~~~g~~~iri~~~~s~~~--------------~~~~~i~~ak~~G~~v~~~~~~------~~~~~~ 140 (263)
T cd07943 81 LLPGIGTVDDLKMAADLGVDVVRVATHCTEAD--------------VSEQHIGAARKLGMDVVGFLMM------SHMASP 140 (263)
T ss_pred ecCCccCHHHHHHHHHcCCCEEEEEechhhHH--------------HHHHHHHHHHHCCCeEEEEEEe------ccCCCH
Confidence 5 366899999999999999999988754 3568899999999999988874 357899
Q ss_pred HHHHHHHHHHHHCCcCEEEEcCCCCCCcHHHHHHHHHHHHHhCCCceEEEEeCCCCCcHHHHHHHHHHcCCCEEeceee
Q 018252 277 SKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQVSPMHAKPCFT 355 (359)
Q Consensus 277 e~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~lv~~l~~~~p~~~L~~H~HNd~GLAlANalaAv~AGa~~ID~tl~ 355 (359)
+++.++++++.++|+++|+|+||+|.++|.+++++++.++++++.++|++|+|||+|||+||+++|+++||++||+|+.
T Consensus 141 ~~~~~~~~~~~~~G~d~i~l~DT~G~~~P~~v~~lv~~l~~~~~~~~l~~H~Hn~~GlA~AN~laAi~aGa~~vd~s~~ 219 (263)
T cd07943 141 EELAEQAKLMESYGADCVYVTDSAGAMLPDDVRERVRALREALDPTPVGFHGHNNLGLAVANSLAAVEAGATRIDGSLA 219 (263)
T ss_pred HHHHHHHHHHHHcCCCEEEEcCCCCCcCHHHHHHHHHHHHHhCCCceEEEEecCCcchHHHHHHHHHHhCCCEEEeecc
Confidence 9999999999999999999999999999999999999999999866999999999999999999999999999999985
No 28
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=100.00 E-value=1.9e-43 Score=329.97 Aligned_cols=209 Identities=29% Similarity=0.398 Sum_probs=184.1
Q ss_pred cccCCCCCCCCCHHHHHHHHHHHHhCCCCEEEEec-cCCCCCcCCCCCHHHHHHHhhhcCCCeEEEEeC-ChHhHHHHHH
Q 018252 135 RDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATS-FVSPKWVPQLADARDVMEAVRDLEGARLPVLTP-NLKGFEAAIA 212 (359)
Q Consensus 135 RDG~Q~~~~~~~~~~k~~ia~~L~~aGv~~IEvG~-fvspk~vPq~~D~~ev~~~l~~~~~~~l~~l~~-n~~gie~a~~ 212 (359)
|||+|+.++.|++++|++|++.|+++||++||+|+ ++++ .+.+.+.+..+..++.++.++++ +.++++.+++
T Consensus 1 RDG~Q~~~~~~~~~~k~~i~~~L~~~Gv~~iEvg~~~~~~------~~~~~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 74 (237)
T PF00682_consen 1 RDGEQSNGVAFSTEEKLEIAKALDEAGVDYIEVGFPFASE------DDFEQVRRLREALPNARLQALCRANEEDIERAVE 74 (237)
T ss_dssp THHHHHCSTT--HHHHHHHHHHHHHHTTSEEEEEHCTSSH------HHHHHHHHHHHHHHSSEEEEEEESCHHHHHHHHH
T ss_pred CCcCcCCCCCcCHHHHHHHHHHHHHhCCCEEEEcccccCH------HHHHHhhhhhhhhcccccceeeeehHHHHHHHHH
Confidence 99999999999999999999999999999999995 3443 24455555555667799999997 5567766555
Q ss_pred ----cCCCEEEEecCCchHHHHhhhcCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHH
Q 018252 213 ----AGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHD 288 (359)
Q Consensus 213 ----aGv~~V~i~~s~S~~~~~~n~~~t~~e~l~~i~~~i~~Ak~~G~~V~~~is~~fg~~~~~r~~~e~l~~~a~~l~~ 288 (359)
+|++.|+++.+.|+.|.+.+++++.++.++++.+++++||++|++| .|++++.++++++++.++++++.+
T Consensus 75 ~~~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~v~~ak~~g~~v------~~~~~~~~~~~~~~~~~~~~~~~~ 148 (237)
T PF00682_consen 75 AAKEAGIDIIRIFISVSDLHIRKNLNKSREEALERIEEAVKYAKELGYEV------AFGCEDASRTDPEELLELAEALAE 148 (237)
T ss_dssp HHHHTTSSEEEEEEETSHHHHHHHTCSHHHHHHHHHHHHHHHHHHTTSEE------EEEETTTGGSSHHHHHHHHHHHHH
T ss_pred hhHhccCCEEEecCcccHHHHHHhhcCCHHHHHHHHHHHHHHHHhcCCce------EeCccccccccHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999998 477788899999999999999999
Q ss_pred CCcCEEEEcCCCCCCcHHHHHHHHHHHHHhCCCceEEEEeCCCCCcHHHHHHHHHHcCCCEEeceee
Q 018252 289 MGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQVSPMHAKPCFT 355 (359)
Q Consensus 289 ~Gad~I~L~DT~G~~~P~~v~~lv~~l~~~~p~~~L~~H~HNd~GLAlANalaAv~AGa~~ID~tl~ 355 (359)
+|+++|+|+||+|.++|.+++++++.+++++|.++|++|+|||+|||+||+++|+++||++||+|+.
T Consensus 149 ~g~~~i~l~Dt~G~~~P~~v~~lv~~~~~~~~~~~l~~H~Hnd~Gla~An~laA~~aGa~~id~t~~ 215 (237)
T PF00682_consen 149 AGADIIYLADTVGIMTPEDVAELVRALREALPDIPLGFHAHNDLGLAVANALAALEAGADRIDGTLG 215 (237)
T ss_dssp HT-SEEEEEETTS-S-HHHHHHHHHHHHHHSTTSEEEEEEBBTTS-HHHHHHHHHHTT-SEEEEBGG
T ss_pred cCCeEEEeeCccCCcCHHHHHHHHHHHHHhccCCeEEEEecCCccchhHHHHHHHHcCCCEEEccCc
Confidence 9999999999999999999999999999999988999999999999999999999999999999985
No 29
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=100.00 E-value=6.4e-42 Score=328.36 Aligned_cols=206 Identities=20% Similarity=0.217 Sum_probs=181.6
Q ss_pred EEeCCCcccCCCC-CCCCCHHHHHHHHHHHHhCCCCEEEEeccCC----CCCcCCCCCHHHHHHHhh-hcCCCeEEEEeC
Q 018252 129 IVEVGPRDGLQNE-KNTVPTGVKVELIRRLVSSGLPVVEATSFVS----PKWVPQLADARDVMEAVR-DLEGARLPVLTP 202 (359)
Q Consensus 129 I~D~TLRDG~Q~~-~~~~~~~~k~~ia~~L~~aGv~~IEvG~fvs----pk~vPq~~D~~ev~~~l~-~~~~~~l~~l~~ 202 (359)
|+|||||||+|++ +..|++++|+++++.|+++||+.||+|+++. +++. ..+..+.++.++ ..+++++.+|+|
T Consensus 1 i~DtTlRDG~Qs~~~~~~~~~~~~~ia~~L~~~Gv~~iE~G~~a~~~~~~~~~--~~~~~e~i~~~~~~~~~~~l~~~~r 78 (275)
T cd07937 1 ITDTTLRDAHQSLLATRMRTEDMLPIAEALDEAGFFSLEVWGGATFDVCMRFL--NEDPWERLRELRKAMPNTPLQMLLR 78 (275)
T ss_pred CCcCcccchhhchhceeccHHHHHHHHHHHHHcCCCEEEccCCcchhhhcccc--CCCHHHHHHHHHHhCCCCceehhcc
Confidence 5899999999998 8999999999999999999999999998543 2222 234445455554 568899999987
Q ss_pred C--------------hHhHHHHHHcCCCEEEEecCCchHHHHhhhcCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecC
Q 018252 203 N--------------LKGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGC 268 (359)
Q Consensus 203 n--------------~~gie~a~~aGv~~V~i~~s~S~~~~~~n~~~t~~e~l~~i~~~i~~Ak~~G~~V~~~is~~fg~ 268 (359)
. ..+++.+.++|++.|+++.+.|+ ++.+.+.+++||++|+++.+++++++
T Consensus 79 ~~~~~~~~~~p~~~~~~di~~~~~~g~~~iri~~~~~~--------------~~~~~~~i~~ak~~G~~v~~~i~~~~-- 142 (275)
T cd07937 79 GQNLVGYRHYPDDVVELFVEKAAKNGIDIFRIFDALND--------------VRNLEVAIKAVKKAGKHVEGAICYTG-- 142 (275)
T ss_pred cccccCccCCCcHHHHHHHHHHHHcCCCEEEEeecCCh--------------HHHHHHHHHHHHHCCCeEEEEEEecC--
Confidence 3 36789999999999999999877 45678999999999999988887554
Q ss_pred CCCCCCCHHHHHHHHHHHHHCCcCEEEEcCCCCCCcHHHHHHHHHHHHHhCCCceEEEEeCCCCCcHHHHHHHHHHcCCC
Q 018252 269 PVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQVSPM 348 (359)
Q Consensus 269 ~~~~r~~~e~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~lv~~l~~~~p~~~L~~H~HNd~GLAlANalaAv~AGa~ 348 (359)
.++++++++.++++++.++|+++|+|+||+|.++|.++.++++.++++++ ++|++|+|||+|||+||+++|+++||+
T Consensus 143 --~~~~~~~~~~~~~~~~~~~Ga~~i~l~DT~G~~~P~~v~~lv~~l~~~~~-~~l~~H~Hnd~GlA~aN~laA~~aGa~ 219 (275)
T cd07937 143 --SPVHTLEYYVKLAKELEDMGADSICIKDMAGLLTPYAAYELVKALKKEVG-LPIHLHTHDTSGLAVATYLAAAEAGVD 219 (275)
T ss_pred --CCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHhCC-CeEEEEecCCCChHHHHHHHHHHhCCC
Confidence 36899999999999999999999999999999999999999999999998 899999999999999999999999999
Q ss_pred EEeceee
Q 018252 349 HAKPCFT 355 (359)
Q Consensus 349 ~ID~tl~ 355 (359)
+||+|+.
T Consensus 220 ~vd~sv~ 226 (275)
T cd07937 220 IVDTAIS 226 (275)
T ss_pred EEEEecc
Confidence 9999985
No 30
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=100.00 E-value=9.8e-41 Score=328.59 Aligned_cols=210 Identities=22% Similarity=0.301 Sum_probs=181.6
Q ss_pred CccEEEeCCCcccCCCCCCCCCHHHHHHHHHHHHhCCCCEEEEeccC-----CCC-CcCCCCCHHHHHHHh-hhcCCCeE
Q 018252 125 RFVKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFV-----SPK-WVPQLADARDVMEAV-RDLEGARL 197 (359)
Q Consensus 125 ~~V~I~D~TLRDG~Q~~~~~~~~~~k~~ia~~L~~aGv~~IEvG~fv-----spk-~vPq~~D~~ev~~~l-~~~~~~~l 197 (359)
++|+|+|||||||+|+.++.|++++|++|++.|+++||+.||+|+.. +-. ..|...+.+ +++.+ +..+++++
T Consensus 2 ~~i~I~D~TLRDG~q~~~~~f~~~~~~~i~~~L~~aGv~~IEvg~~~g~g~~s~~~g~~~~~~~e-~i~~~~~~~~~~~~ 80 (337)
T PRK08195 2 KKIYISDVTLRDGMHAVRHQYTLEQVRAIARALDAAGVPVIEVTHGDGLGGSSFNYGFGAHTDEE-YIEAAAEVVKQAKI 80 (337)
T ss_pred CceEEEECCCCCcCcCCCCccCHHHHHHHHHHHHHcCCCEEEeecCCCCCCccccCCCCCCCHHH-HHHHHHHhCCCCEE
Confidence 57999999999999999999999999999999999999999998421 100 112223444 44544 56788999
Q ss_pred EEEe-C---ChHhHHHHHHcCCCEEEEecCCchHHHHhhhcCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCC
Q 018252 198 PVLT-P---NLKGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGA 273 (359)
Q Consensus 198 ~~l~-~---n~~gie~a~~aGv~~V~i~~s~S~~~~~~n~~~t~~e~l~~i~~~i~~Ak~~G~~V~~~is~~fg~~~~~r 273 (359)
.+++ | +.++++++.++|++.|+++...++. +.+.+.+++||++|++|.++++++ ++
T Consensus 81 ~~ll~pg~~~~~dl~~a~~~gvd~iri~~~~~e~--------------~~~~~~i~~ak~~G~~v~~~l~~a------~~ 140 (337)
T PRK08195 81 AALLLPGIGTVDDLKMAYDAGVRVVRVATHCTEA--------------DVSEQHIGLARELGMDTVGFLMMS------HM 140 (337)
T ss_pred EEEeccCcccHHHHHHHHHcCCCEEEEEEecchH--------------HHHHHHHHHHHHCCCeEEEEEEec------cC
Confidence 8866 4 5689999999999999998866553 235789999999999999888754 58
Q ss_pred CCHHHHHHHHHHHHHCCcCEEEEcCCCCCCcHHHHHHHHHHHHHhC-CCceEEEEeCCCCCcHHHHHHHHHHcCCCEEec
Q 018252 274 IPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVV-PVEKLAVHLHDTYGQSLPNILISLQVSPMHAKP 352 (359)
Q Consensus 274 ~~~e~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~lv~~l~~~~-p~~~L~~H~HNd~GLAlANalaAv~AGa~~ID~ 352 (359)
++++++.++++.+.++|++.|+|+||+|.++|.+++++++++++++ |+++|+||+|||+|||+||+++|+++||++||+
T Consensus 141 ~~~e~l~~~a~~~~~~Ga~~i~i~DT~G~~~P~~v~~~v~~l~~~l~~~i~ig~H~HnnlGla~ANslaAi~aGa~~iD~ 220 (337)
T PRK08195 141 APPEKLAEQAKLMESYGAQCVYVVDSAGALLPEDVRDRVRALRAALKPDTQVGFHGHNNLGLGVANSLAAVEAGATRIDG 220 (337)
T ss_pred CCHHHHHHHHHHHHhCCCCEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCCeEEEEeCCCcchHHHHHHHHHHhCCCEEEe
Confidence 8999999999999999999999999999999999999999999999 679999999999999999999999999999999
Q ss_pred eee
Q 018252 353 CFT 355 (359)
Q Consensus 353 tl~ 355 (359)
|+.
T Consensus 221 Sl~ 223 (337)
T PRK08195 221 SLA 223 (337)
T ss_pred cCh
Confidence 985
No 31
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=100.00 E-value=1.1e-40 Score=327.58 Aligned_cols=211 Identities=21% Similarity=0.279 Sum_probs=183.6
Q ss_pred CccEEEeCCCcccCCCCCCCCCHHHHHHHHHHHHhCCCCEEEEeccC-----CCCC-cCCCCCHHHHHHHhhhcCCCeEE
Q 018252 125 RFVKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFV-----SPKW-VPQLADARDVMEAVRDLEGARLP 198 (359)
Q Consensus 125 ~~V~I~D~TLRDG~Q~~~~~~~~~~k~~ia~~L~~aGv~~IEvG~fv-----spk~-vPq~~D~~ev~~~l~~~~~~~l~ 198 (359)
++|+|+|||||||+|..++.|++++|++|++.|+++||+.||+|+.. +-.. .|...+.+.+.+.++..+++++.
T Consensus 1 ~~i~i~D~TLRDG~q~~~~~f~~~~~~~ia~~Ld~aGV~~IEvg~g~gl~g~s~~~G~~~~~~~e~i~~~~~~~~~~~~~ 80 (333)
T TIGR03217 1 KKLYITDVTLRDGMHAIRHQFTIEQVRAIAAALDEAGVDAIEVTHGDGLGGSSFNYGFSAHTDLEYIEAAADVVKRAKVA 80 (333)
T ss_pred CCcEEEECCCCCCCcCCCCcCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCccccCCCCCCChHHHHHHHHHhCCCCEEE
Confidence 46899999999999999999999999999999999999999997421 1110 13334556666666677889998
Q ss_pred EEe-C---ChHhHHHHHHcCCCEEEEecCCchHHHHhhhcCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCC
Q 018252 199 VLT-P---NLKGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAI 274 (359)
Q Consensus 199 ~l~-~---n~~gie~a~~aGv~~V~i~~s~S~~~~~~n~~~t~~e~l~~i~~~i~~Ak~~G~~V~~~is~~fg~~~~~r~ 274 (359)
+++ | +.++++.|.++|++.|+++.+.++.. .+.+.+++||++|+++.++++++ +++
T Consensus 81 ~ll~pg~~~~~dl~~a~~~gvd~iri~~~~~e~d--------------~~~~~i~~ak~~G~~v~~~l~~s------~~~ 140 (333)
T TIGR03217 81 VLLLPGIGTVHDLKAAYDAGARTVRVATHCTEAD--------------VSEQHIGMARELGMDTVGFLMMS------HMT 140 (333)
T ss_pred EEeccCccCHHHHHHHHHCCCCEEEEEeccchHH--------------HHHHHHHHHHHcCCeEEEEEEcc------cCC
Confidence 776 4 67899999999999999988766542 35688999999999999888754 478
Q ss_pred CHHHHHHHHHHHHHCCcCEEEEcCCCCCCcHHHHHHHHHHHHHhCC-CceEEEEeCCCCCcHHHHHHHHHHcCCCEEece
Q 018252 275 PPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVP-VEKLAVHLHDTYGQSLPNILISLQVSPMHAKPC 353 (359)
Q Consensus 275 ~~e~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~lv~~l~~~~p-~~~L~~H~HNd~GLAlANalaAv~AGa~~ID~t 353 (359)
+++++.++++.+.++|++.|+|+||+|.++|.++.+++++++++++ +++|+||+|||+|||+||+++|+++||++||+|
T Consensus 141 ~~e~l~~~a~~~~~~Ga~~i~i~DT~G~~~P~~v~~~v~~l~~~l~~~i~ig~H~HnnlGla~ANslaAi~aGa~~iD~S 220 (333)
T TIGR03217 141 PPEKLAEQAKLMESYGADCVYIVDSAGAMLPDDVRDRVRALKAVLKPETQVGFHAHHNLSLAVANSIAAIEAGATRIDAS 220 (333)
T ss_pred CHHHHHHHHHHHHhcCCCEEEEccCCCCCCHHHHHHHHHHHHHhCCCCceEEEEeCCCCchHHHHHHHHHHhCCCEEEee
Confidence 9999999999999999999999999999999999999999999985 689999999999999999999999999999999
Q ss_pred ee
Q 018252 354 FT 355 (359)
Q Consensus 354 l~ 355 (359)
+.
T Consensus 221 l~ 222 (333)
T TIGR03217 221 LR 222 (333)
T ss_pred cc
Confidence 85
No 32
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=100.00 E-value=6e-41 Score=320.32 Aligned_cols=207 Identities=14% Similarity=0.131 Sum_probs=179.4
Q ss_pred EEeCCCcccCCCCCCCCCHHHHHHHHHHHHhCCCCEEEEeccCCCCCc----CCCCCHHHHHHHhhhc-CCCeEEEEeCC
Q 018252 129 IVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWV----PQLADARDVMEAVRDL-EGARLPVLTPN 203 (359)
Q Consensus 129 I~D~TLRDG~Q~~~~~~~~~~k~~ia~~L~~aGv~~IEvG~fvspk~v----Pq~~D~~ev~~~l~~~-~~~~l~~l~~n 203 (359)
|+|||||||+|.+++.|+.++|++|++.|+++||+.||+|++...... ....+.+.+.+..+.. +++++.++++.
T Consensus 1 i~D~TLRDG~q~~~~~f~~~~~~~ia~~L~~~GVd~IEvG~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 80 (266)
T cd07944 1 ILDCTLRDGGYVNNWDFGDEFVKAIYRALAAAGIDYVEIGYRSSPEKEFKGKSAFCDDEFLRRLLGDSKGNTKIAVMVDY 80 (266)
T ss_pred CccCCcccCccccCccCCHHHHHHHHHHHHHCCCCEEEeecCCCCccccCCCccCCCHHHHHHHHhhhccCCEEEEEECC
Confidence 589999999999999999999999999999999999999997543210 1123445554554544 48999999974
Q ss_pred ----hHhHHHHHHcCCCEEEEecCCchHHHHhhhcCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHH
Q 018252 204 ----LKGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKV 279 (359)
Q Consensus 204 ----~~gie~a~~aGv~~V~i~~s~S~~~~~~n~~~t~~e~l~~i~~~i~~Ak~~G~~V~~~is~~fg~~~~~r~~~e~l 279 (359)
.++++.+.++|++.|+++.+.+ .++.+.+++++||++|++|.++++.+ ++++++++
T Consensus 81 ~~~~~~~l~~a~~~gv~~iri~~~~~--------------~~~~~~~~i~~ak~~G~~v~~~~~~a------~~~~~~~~ 140 (266)
T cd07944 81 GNDDIDLLEPASGSVVDMIRVAFHKH--------------EFDEALPLIKAIKEKGYEVFFNLMAI------SGYSDEEL 140 (266)
T ss_pred CCCCHHHHHHHhcCCcCEEEEecccc--------------cHHHHHHHHHHHHHCCCeEEEEEEee------cCCCHHHH
Confidence 3789999999999999987643 36778899999999999998877754 46899999
Q ss_pred HHHHHHHHHCCcCEEEEcCCCCCCcHHHHHHHHHHHHHhCCC-ceEEEEeCCCCCcHHHHHHHHHHcCCCEEeceee
Q 018252 280 AYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPV-EKLAVHLHDTYGQSLPNILISLQVSPMHAKPCFT 355 (359)
Q Consensus 280 ~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~lv~~l~~~~p~-~~L~~H~HNd~GLAlANalaAv~AGa~~ID~tl~ 355 (359)
.++++.+.++|+++|+|+||+|.++|.+++++++.++++++. ++|++|+|||+|||+||+++|+++||++||+|+.
T Consensus 141 ~~~~~~~~~~g~~~i~l~DT~G~~~P~~v~~lv~~l~~~~~~~~~i~~H~Hn~~Gla~AN~laA~~aGa~~vd~s~~ 217 (266)
T cd07944 141 LELLELVNEIKPDVFYIVDSFGSMYPEDIKRIISLLRSNLDKDIKLGFHAHNNLQLALANTLEAIELGVEIIDATVY 217 (266)
T ss_pred HHHHHHHHhCCCCEEEEecCCCCCCHHHHHHHHHHHHHhcCCCceEEEEeCCCccHHHHHHHHHHHcCCCEEEEecc
Confidence 999999999999999999999999999999999999999874 8999999999999999999999999999999985
No 33
>KOG2367 consensus Alpha-isopropylmalate synthase/homocitrate synthase [Amino acid transport and metabolism]
Probab=100.00 E-value=1.8e-40 Score=329.13 Aligned_cols=235 Identities=17% Similarity=0.193 Sum_probs=208.8
Q ss_pred cCccchhhhhhhhhcCCCCccEEEeCCCcccCCCCCCCCCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcCCCCCHHHHH
Q 018252 107 CNDKDIRDITNKFLKGIPRFVKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVM 186 (359)
Q Consensus 107 ~~~~~~~~~~~~~~~~~p~~V~I~D~TLRDG~Q~~~~~~~~~~k~~ia~~L~~aGv~~IEvG~fvspk~vPq~~D~~ev~ 186 (359)
..|...|.|+.. ..|+.+++.|+|||||+|+++..|++++|++|+++|+..|+++||+|+++... .|+++..
T Consensus 41 ~~P~~~r~~~~l---~~~n~vr~~dttLRdGeQs~ga~~~~~qK~eiar~L~~~gvd~IEv~fP~aSe-----~~~~~~~ 112 (560)
T KOG2367|consen 41 LPPYGPRPPNDL---SDVNYVRVLDTTLRDGEQSPGAFLTTEQKLEIARQLAKLGVDIIEVGFPVASE-----QDFEDCK 112 (560)
T ss_pred CCCCCCCCCccc---cCcCcceeecccccccccCCCCcCCcHHHHHHHHHHHhcCcCEEEecCcccCc-----chHHHHH
Confidence 445555655543 46788999999999999999999999999999999999999999999987653 4666655
Q ss_pred HHhh-hcCCCeEEEEeCC-hHhHHHHHHcCCC----EEEEecCCchHHHHhhhcCCHHHHHHHHHHHHHHHHhCCC-cEE
Q 018252 187 EAVR-DLEGARLPVLTPN-LKGFEAAIAAGAK----EVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSI-PVR 259 (359)
Q Consensus 187 ~~l~-~~~~~~l~~l~~n-~~gie~a~~aGv~----~V~i~~s~S~~~~~~n~~~t~~e~l~~i~~~i~~Ak~~G~-~V~ 259 (359)
..++ ....+.+.+++|. .+++++++|++.. +|++|+++|+.|.+.+++++.+|.++...++++.+|++|. .+
T Consensus 113 ~i~k~~g~~~~I~~l~rc~~~di~~tvEAl~~aKr~~Vh~~~aTSd~~rey~~~kskeevi~~Ave~ikfvkslg~~~i- 191 (560)
T KOG2367|consen 113 TIAKTLGYVPVICTLIRCHMDDIERTVEALKYAKRPRVHVFIATSDIHREYKLKKSKEEVIESAVEVIKFVKSLGKWDI- 191 (560)
T ss_pred HHHHhCCCCceEEEeeccchHHHHHHHHHhhccCcceEEEEecccHHHHHHHhcccHHHHHHHHHHHHHHHHhcccceE-
Confidence 5555 3345788999995 5899999998543 5999999999999999999999999999999999999994 44
Q ss_pred EEEeeeecCCCCCCCCHHHHHHHHHHHHHCCcCEEEEcCCCCCCcHHHHHHHHHHHHHhCCC---ceEEEEeCCCCCcHH
Q 018252 260 GYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPV---EKLAVHLHDTYGQSL 336 (359)
Q Consensus 260 ~~is~~fg~~~~~r~~~e~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~lv~~l~~~~p~---~~L~~H~HNd~GLAl 336 (359)
.|++++.+|++++|+++++++...+|+.+++|+||+|+.+|.+++++|+.++.+.|+ +.|+.|||||+|+|+
T Consensus 192 -----eFSpEd~~rse~~fl~eI~~aV~Kag~~tvnipdTVgia~P~~y~dLI~y~~tn~~~~e~v~Is~HcHND~G~a~ 266 (560)
T KOG2367|consen 192 -----EFSPEDFGRSELEFLLEILGAVIKAGVTTVNIPDTVGIATPNEYGDLIEYLKTNTPGREKVCISTHCHNDLGCAT 266 (560)
T ss_pred -----EECccccccCcHHHHHHHHHHHHHhCCccccCcceecccChHHHHHHHHHHHccCCCceeEEEEEeecCCccHHH
Confidence 599999999999999999999999999999999999999999999999999998875 579999999999999
Q ss_pred HHHHHHHHcCCCEEeceee
Q 018252 337 PNILISLQVSPMHAKPCFT 355 (359)
Q Consensus 337 ANalaAv~AGa~~ID~tl~ 355 (359)
||++.++.|||++||+||.
T Consensus 267 Ant~~g~~AGA~~VE~~i~ 285 (560)
T KOG2367|consen 267 ANTELGLLAGARQVEVTIN 285 (560)
T ss_pred HHHHHHhhcCcceEEEEee
Confidence 9999999999999999985
No 34
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=100.00 E-value=5.5e-40 Score=333.38 Aligned_cols=210 Identities=20% Similarity=0.253 Sum_probs=182.4
Q ss_pred CccEEEeCCCcccCCCC-CCCCCHHHHHHHHHHHHhCCCCEEEEecc----CCCCCcCCCCCHHHHHHHhhh-cCCCeEE
Q 018252 125 RFVKIVEVGPRDGLQNE-KNTVPTGVKVELIRRLVSSGLPVVEATSF----VSPKWVPQLADARDVMEAVRD-LEGARLP 198 (359)
Q Consensus 125 ~~V~I~D~TLRDG~Q~~-~~~~~~~~k~~ia~~L~~aGv~~IEvG~f----vspk~vPq~~D~~ev~~~l~~-~~~~~l~ 198 (359)
++|+|+|||||||+|++ +.+|++++|++|++.|+++|++.||+|.. +.-.++ ..+..+.++.+++ .+++++.
T Consensus 2 ~~V~I~DtTlRDG~Qs~~~~~~~t~dkl~ia~~Ld~~Gv~~IE~~ggatf~~~~~f~--~e~p~e~l~~l~~~~~~~~l~ 79 (448)
T PRK12331 2 TKIKITETVLRDGQQSLIATRMTTEEMLPILEKLDNAGYHSLEMWGGATFDACLRFL--NEDPWERLRKIRKAVKKTKLQ 79 (448)
T ss_pred CccEEEECCCCccccCcCCcccCHHHHHHHHHHHHHcCCCEEEecCCccchhhhccC--CCCHHHHHHHHHHhCCCCEEE
Confidence 46999999999999998 67999999999999999999999999821 110111 1355666677765 5889998
Q ss_pred EEeC--Ch------------HhHHHHHHcCCCEEEEecCCchHHHHhhhcCCHHHHHHHHHHHHHHHHhCCCcEEEEEee
Q 018252 199 VLTP--NL------------KGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSC 264 (359)
Q Consensus 199 ~l~~--n~------------~gie~a~~aGv~~V~i~~s~S~~~~~~n~~~t~~e~l~~i~~~i~~Ak~~G~~V~~~is~ 264 (359)
+|++ |. +++++|+++|++.|++|.+.|+.+ ++.+++++||++|+.++++++.
T Consensus 80 ~l~r~~N~~G~~~~pddvv~~~v~~A~~~Gvd~irif~~lnd~~--------------n~~~~v~~ak~~G~~v~~~i~~ 145 (448)
T PRK12331 80 MLLRGQNLLGYRNYADDVVESFVQKSVENGIDIIRIFDALNDVR--------------NLETAVKATKKAGGHAQVAISY 145 (448)
T ss_pred EEeccccccccccCchhhHHHHHHHHHHCCCCEEEEEEecCcHH--------------HHHHHHHHHHHcCCeEEEEEEe
Confidence 7775 33 356899999999999999999975 2456889999999999999987
Q ss_pred eecCCCCCCCCHHHHHHHHHHHHHCCcCEEEEcCCCCCCcHHHHHHHHHHHHHhCCCceEEEEeCCCCCcHHHHHHHHHH
Q 018252 265 VVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQ 344 (359)
Q Consensus 265 ~fg~~~~~r~~~e~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~lv~~l~~~~p~~~L~~H~HNd~GLAlANalaAv~ 344 (359)
+++ .+++++++.++++++.++|+++|+|+||+|+++|.+++++++++++.++ ++|++|+|||+|||+||+++|++
T Consensus 146 t~~----p~~~~~~~~~~a~~l~~~Gad~I~i~Dt~G~l~P~~v~~lv~alk~~~~-~pi~~H~Hnt~GlA~AN~laAie 220 (448)
T PRK12331 146 TTS----PVHTIDYFVKLAKEMQEMGADSICIKDMAGILTPYVAYELVKRIKEAVT-VPLEVHTHATSGIAEMTYLKAIE 220 (448)
T ss_pred ecC----CCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHhcC-CeEEEEecCCCCcHHHHHHHHHH
Confidence 764 3699999999999999999999999999999999999999999999997 89999999999999999999999
Q ss_pred cCCCEEeceee
Q 018252 345 VSPMHAKPCFT 355 (359)
Q Consensus 345 AGa~~ID~tl~ 355 (359)
+||++||+|+.
T Consensus 221 aGad~vD~sv~ 231 (448)
T PRK12331 221 AGADIIDTAIS 231 (448)
T ss_pred cCCCEEEeecc
Confidence 99999999986
No 35
>PRK14041 oxaloacetate decarboxylase; Provisional
Probab=100.00 E-value=9.7e-40 Score=332.52 Aligned_cols=209 Identities=20% Similarity=0.240 Sum_probs=182.3
Q ss_pred ccEEEeCCCcccCCCC-CCCCCHHHHHHHHHHHHhCCCCEEEEeccCC----CCCcCCCCCHHHHHHHhhh-cCCCeEEE
Q 018252 126 FVKIVEVGPRDGLQNE-KNTVPTGVKVELIRRLVSSGLPVVEATSFVS----PKWVPQLADARDVMEAVRD-LEGARLPV 199 (359)
Q Consensus 126 ~V~I~D~TLRDG~Q~~-~~~~~~~~k~~ia~~L~~aGv~~IEvG~fvs----pk~vPq~~D~~ev~~~l~~-~~~~~l~~ 199 (359)
+|+|+|||||||+|+. +.+|++++|++|++.|+++|++.||+|..+. ..++ ..+..++++.+++ .+++++.+
T Consensus 2 ~V~I~DtTlRDG~Qs~~~~~~~t~dkl~Ia~~Ld~~Gv~~IE~~ggatfd~~~~Fl--~e~p~e~l~~l~~~~~~~~l~~ 79 (467)
T PRK14041 2 KVMFVDTTLRDGHQSLIATRMRTEDMLPALEAFDRMGFYSMEVWGGATFDVCVRFL--NENPWERLKEIRKRLKNTKIQM 79 (467)
T ss_pred ceEEEECCCCccccCcCCccCCHHHHHHHHHHHHHcCCCEEEecCCccchhhhccc--CCCHHHHHHHHHHhCCCCEEEE
Confidence 4899999999999998 5899999999999999999999999963211 1111 1355666676665 58999999
Q ss_pred EeC--ChH-------h-----HHHHHHcCCCEEEEecCCchHHHHhhhcCCHHHHHHHHHHHHHHHHhCCCcEEEEEeee
Q 018252 200 LTP--NLK-------G-----FEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCV 265 (359)
Q Consensus 200 l~~--n~~-------g-----ie~a~~aGv~~V~i~~s~S~~~~~~n~~~t~~e~l~~i~~~i~~Ak~~G~~V~~~is~~ 265 (359)
|++ |.. + +++|+++|++.|++|.+.|+. +++...+++||++|+.+++++++.
T Consensus 80 l~r~~N~~G~~~~~dDvv~~fv~~A~~~Gvd~irif~~lnd~--------------~n~~~~i~~ak~~G~~v~~~i~~t 145 (467)
T PRK14041 80 LLRGQNLVGYRHYADDVVELFVKKVAEYGLDIIRIFDALNDI--------------RNLEKSIEVAKKHGAHVQGAISYT 145 (467)
T ss_pred EeccccccCcccccchhhHHHHHHHHHCCcCEEEEEEeCCHH--------------HHHHHHHHHHHHCCCEEEEEEEec
Confidence 876 432 3 689999999999999999884 345678899999999999999987
Q ss_pred ecCCCCCCCCHHHHHHHHHHHHHCCcCEEEEcCCCCCCcHHHHHHHHHHHHHhCCCceEEEEeCCCCCcHHHHHHHHHHc
Q 018252 266 VGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQV 345 (359)
Q Consensus 266 fg~~~~~r~~~e~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~lv~~l~~~~p~~~L~~H~HNd~GLAlANalaAv~A 345 (359)
|+ | +++++++.++++++.++||++|+|+||+|.++|.++++++++++++++ ++|++|+|||+|||+||+++|+++
T Consensus 146 ~~-p---~~t~e~~~~~a~~l~~~Gad~I~i~Dt~G~l~P~~v~~Lv~~lk~~~~-vpI~~H~Hnt~GlA~AN~laAiea 220 (467)
T PRK14041 146 VS-P---VHTLEYYLEFARELVDMGVDSICIKDMAGLLTPKRAYELVKALKKKFG-VPVEVHSHCTTGLASLAYLAAVEA 220 (467)
T ss_pred cC-C---CCCHHHHHHHHHHHHHcCCCEEEECCccCCcCHHHHHHHHHHHHHhcC-CceEEEecCCCCcHHHHHHHHHHh
Confidence 75 3 789999999999999999999999999999999999999999999998 899999999999999999999999
Q ss_pred CCCEEeceee
Q 018252 346 SPMHAKPCFT 355 (359)
Q Consensus 346 Ga~~ID~tl~ 355 (359)
||++||+|+.
T Consensus 221 Gad~vD~sv~ 230 (467)
T PRK14041 221 GADMFDTAIS 230 (467)
T ss_pred CCCEEEeecc
Confidence 9999999985
No 36
>PRK12330 oxaloacetate decarboxylase; Provisional
Probab=100.00 E-value=1.3e-37 Score=318.21 Aligned_cols=213 Identities=17% Similarity=0.229 Sum_probs=184.1
Q ss_pred CCCccEEEeCCCcccCCCCC-CCCCHHHHHHHHHHHHhCCCCEEEEeccCC----CCCcCCCCCHHHHHHHhh-hcCCCe
Q 018252 123 IPRFVKIVEVGPRDGLQNEK-NTVPTGVKVELIRRLVSSGLPVVEATSFVS----PKWVPQLADARDVMEAVR-DLEGAR 196 (359)
Q Consensus 123 ~p~~V~I~D~TLRDG~Q~~~-~~~~~~~k~~ia~~L~~aGv~~IEvG~fvs----pk~vPq~~D~~ev~~~l~-~~~~~~ 196 (359)
|+++|+|+|+|||||.|+++ .+|++++|+.|++.|+++|++.||+|..+. -++. ..|..+.++.++ ..+++.
T Consensus 1 ~~~~i~i~DTTLRDG~QSl~atr~~t~d~l~ia~~ld~~G~~siE~~GGatfd~~~rfl--~Edpwerlr~lr~~~~nt~ 78 (499)
T PRK12330 1 MPRKIGVTELALRDAHQSLMATRMAMEDMVGACEDIDNAGYWSVECWGGATFDACIRFL--NEDPWERLRTFRKLMPNSR 78 (499)
T ss_pred CCCCcEEEECCccchhhcccCccCCHHHHHHHHHHHHhcCCCEEEecCCcchhhhhccc--CCCHHHHHHHHHHhCCCCe
Confidence 45789999999999999987 999999999999999999999999994221 1111 145555555555 579999
Q ss_pred EEEEeC--C------------hHhHHHHHHcCCCEEEEecCCchHHHHhhhcCCHHHHHHHHHHHHHHHHhCCCcEEEEE
Q 018252 197 LPVLTP--N------------LKGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYV 262 (359)
Q Consensus 197 l~~l~~--n------------~~gie~a~~aGv~~V~i~~s~S~~~~~~n~~~t~~e~l~~i~~~i~~Ak~~G~~V~~~i 262 (359)
+..|+| | ..+++.++++|++.|++|.+.+++ +.++.+++.+++.|..++++|
T Consensus 79 lqmL~Rg~N~vGy~~y~ddvv~~fv~~a~~~Gidi~RIfd~lndv--------------~nl~~ai~~vk~ag~~~~~~i 144 (499)
T PRK12330 79 LQMLLRGQNLLGYRHYEDEVVDRFVEKSAENGMDVFRVFDALNDP--------------RNLEHAMKAVKKVGKHAQGTI 144 (499)
T ss_pred EEEEEcccccCCccCcchhHHHHHHHHHHHcCCCEEEEEecCChH--------------HHHHHHHHHHHHhCCeEEEEE
Confidence 999997 2 136889999999999999999886 345677888899999998888
Q ss_pred eeeecCCCCCCCCHHHHHHHHHHHHHCCcCEEEEcCCCCCCcHHHHHHHHHHHHHhCC-CceEEEEeCCCCCcHHHHHHH
Q 018252 263 SCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVP-VEKLAVHLHDTYGQSLPNILI 341 (359)
Q Consensus 263 s~~fg~~~~~r~~~e~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~lv~~l~~~~p-~~~L~~H~HNd~GLAlANala 341 (359)
+...+ ..+++++++++++++.++||++|+|+||+|.++|.+++++++++++++| +++|++|+|||+|||+||+++
T Consensus 145 ~yt~s----p~~t~e~~~~~a~~l~~~Gad~I~IkDtaGll~P~~~~~LV~~Lk~~~~~~ipI~~H~Hnt~GlA~An~la 220 (499)
T PRK12330 145 CYTVS----PIHTVEGFVEQAKRLLDMGADSICIKDMAALLKPQPAYDIVKGIKEACGEDTRINLHCHSTTGVTLVSLMK 220 (499)
T ss_pred EEecC----CCCCHHHHHHHHHHHHHcCCCEEEeCCCccCCCHHHHHHHHHHHHHhCCCCCeEEEEeCCCCCcHHHHHHH
Confidence 75433 2679999999999999999999999999999999999999999999996 799999999999999999999
Q ss_pred HHHcCCCEEeceee
Q 018252 342 SLQVSPMHAKPCFT 355 (359)
Q Consensus 342 Av~AGa~~ID~tl~ 355 (359)
|+++||++||+|+.
T Consensus 221 AieAGad~vDtai~ 234 (499)
T PRK12330 221 AIEAGVDVVDTAIS 234 (499)
T ss_pred HHHcCCCEEEeecc
Confidence 99999999999985
No 37
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=100.00 E-value=8.2e-38 Score=326.33 Aligned_cols=206 Identities=21% Similarity=0.271 Sum_probs=179.7
Q ss_pred EEeCCCcccCCCC-CCCCCHHHHHHHHHHHHhCCCCEEEEec---c-CCCCCcCCCCCHHHHHHHhhh-cCCCeEEEEeC
Q 018252 129 IVEVGPRDGLQNE-KNTVPTGVKVELIRRLVSSGLPVVEATS---F-VSPKWVPQLADARDVMEAVRD-LEGARLPVLTP 202 (359)
Q Consensus 129 I~D~TLRDG~Q~~-~~~~~~~~k~~ia~~L~~aGv~~IEvG~---f-vspk~vPq~~D~~ev~~~l~~-~~~~~l~~l~~ 202 (359)
|+|||||||+|++ ..+|++++|++|++.|+++|++.||+|. | +...++ ..|..++++.+++ .+++++.+|+|
T Consensus 1 I~DtTlRDG~Qs~~~~~~~t~dkl~ia~~L~~~Gv~~IE~~GGatfd~~~~f~--~e~~~e~l~~l~~~~~~~~l~~L~R 78 (582)
T TIGR01108 1 ITDVVLRDAHQSLFATRMRTEDMLPIAEKLDDVGYWSLEVWGGATFDACIRFL--NEDPWERLRELKKALPNTPLQMLLR 78 (582)
T ss_pred CccCCCCccccccCCccCCHHHHHHHHHHHHHcCCCEEEecCCcccccccccC--CCCHHHHHHHHHHhCCCCEEEEEEc
Confidence 6899999999998 5799999999999999999999999983 1 111111 1466777777765 78999999976
Q ss_pred --Ch------------HhHHHHHHcCCCEEEEecCCchHHHHhhhcCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecC
Q 018252 203 --NL------------KGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGC 268 (359)
Q Consensus 203 --n~------------~gie~a~~aGv~~V~i~~s~S~~~~~~n~~~t~~e~l~~i~~~i~~Ak~~G~~V~~~is~~fg~ 268 (359)
|. .++++|+++|++.|++|.+.|+. +++...+++||++|+.++++|++.+ +
T Consensus 79 g~N~~G~~~ypddvv~~~v~~a~~~Gvd~irif~~lnd~--------------~n~~~~i~~ak~~G~~v~~~i~~t~-~ 143 (582)
T TIGR01108 79 GQNLLGYRHYADDVVERFVKKAVENGMDVFRIFDALNDP--------------RNLQAAIQAAKKHGAHAQGTISYTT-S 143 (582)
T ss_pred cccccccccCchhhHHHHHHHHHHCCCCEEEEEEecCcH--------------HHHHHHHHHHHHcCCEEEEEEEecc-C
Confidence 43 24688999999999999999885 2466788999999999999998766 4
Q ss_pred CCCCCCCHHHHHHHHHHHHHCCcCEEEEcCCCCCCcHHHHHHHHHHHHHhCCCceEEEEeCCCCCcHHHHHHHHHHcCCC
Q 018252 269 PVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQVSPM 348 (359)
Q Consensus 269 ~~~~r~~~e~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~lv~~l~~~~p~~~L~~H~HNd~GLAlANalaAv~AGa~ 348 (359)
| .++++++.++++++.++|+++|+||||+|.++|.+++++++++++.++ ++|++|+|||+|||+||+++|+++||+
T Consensus 144 p---~~~~~~~~~~~~~~~~~Gad~I~i~Dt~G~~~P~~v~~lv~~lk~~~~-~pi~~H~Hnt~Gla~An~laAveaGa~ 219 (582)
T TIGR01108 144 P---VHTLETYLDLAEELLEMGVDSICIKDMAGILTPKAAYELVSALKKRFG-LPVHLHSHATTGMAEMALLKAIEAGAD 219 (582)
T ss_pred C---CCCHHHHHHHHHHHHHcCCCEEEECCCCCCcCHHHHHHHHHHHHHhCC-CceEEEecCCCCcHHHHHHHHHHhCCC
Confidence 4 489999999999999999999999999999999999999999999998 799999999999999999999999999
Q ss_pred EEeceee
Q 018252 349 HAKPCFT 355 (359)
Q Consensus 349 ~ID~tl~ 355 (359)
+||+|+.
T Consensus 220 ~vd~ai~ 226 (582)
T TIGR01108 220 GIDTAIS 226 (582)
T ss_pred EEEeccc
Confidence 9999985
No 38
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=100.00 E-value=3.9e-37 Score=321.95 Aligned_cols=210 Identities=23% Similarity=0.268 Sum_probs=182.0
Q ss_pred CccEEEeCCCcccCCCCC-CCCCHHHHHHHHHHHHhCCCCEEEEecc----CCCCCcCCCCCHHHHHHHhhh-cCCCeEE
Q 018252 125 RFVKIVEVGPRDGLQNEK-NTVPTGVKVELIRRLVSSGLPVVEATSF----VSPKWVPQLADARDVMEAVRD-LEGARLP 198 (359)
Q Consensus 125 ~~V~I~D~TLRDG~Q~~~-~~~~~~~k~~ia~~L~~aGv~~IEvG~f----vspk~vPq~~D~~ev~~~l~~-~~~~~l~ 198 (359)
++|+|+|||||||+|+++ .+|++++|++|++.|+++|++.||+|.. +..+++ ..|..+.++.+++ .+++++.
T Consensus 2 ~~v~i~DtTlRDG~Qs~~atr~~t~d~l~ia~~l~~~G~~~iE~~ggatfd~~~rfl--~edp~e~l~~l~~~~~~~~l~ 79 (592)
T PRK09282 2 KKVKITDTTLRDAHQSLLATRMRTEDMLPIAEKLDKVGFWSLEVWGGATFDVCIRYL--NEDPWERLRKLKKALPNTPLQ 79 (592)
T ss_pred CccEEEECCCCccccccCCccCCHHHHHHHHHHHHHcCCCEEEecCCccchhhcccC--CccHHHHHHHHHHhCCCCEEE
Confidence 569999999999999995 7899999999999999999999999832 222221 1344444555554 5899999
Q ss_pred EEeC--ChH------------hHHHHHHcCCCEEEEecCCchHHHHhhhcCCHHHHHHHHHHHHHHHHhCCCcEEEEEee
Q 018252 199 VLTP--NLK------------GFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSC 264 (359)
Q Consensus 199 ~l~~--n~~------------gie~a~~aGv~~V~i~~s~S~~~~~~n~~~t~~e~l~~i~~~i~~Ak~~G~~V~~~is~ 264 (359)
+|+| |.. ++++|.++|++.|++|.+.|+. +++...+++||++|..+++++++
T Consensus 80 ~l~Rg~N~~gy~~ypd~vv~~~v~~A~~~Gvd~irif~~lnd~--------------~n~~~~i~~ak~~G~~v~~~i~~ 145 (592)
T PRK09282 80 MLLRGQNLVGYRHYPDDVVEKFVEKAAENGIDIFRIFDALNDV--------------RNMEVAIKAAKKAGAHVQGTISY 145 (592)
T ss_pred EEeccccccccccccchhhHHHHHHHHHCCCCEEEEEEecChH--------------HHHHHHHHHHHHcCCEEEEEEEe
Confidence 9976 443 4889999999999999999886 24567789999999999999987
Q ss_pred eecCCCCCCCCHHHHHHHHHHHHHCCcCEEEEcCCCCCCcHHHHHHHHHHHHHhCCCceEEEEeCCCCCcHHHHHHHHHH
Q 018252 265 VVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQ 344 (359)
Q Consensus 265 ~fg~~~~~r~~~e~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~lv~~l~~~~p~~~L~~H~HNd~GLAlANalaAv~ 344 (359)
.++ | .++++++.++++++.++|+++|+||||+|.++|.+++++++++++.++ ++|++|+|||.|||+||+++|++
T Consensus 146 t~~-p---~~t~~~~~~~a~~l~~~Gad~I~i~Dt~G~~~P~~~~~lv~~lk~~~~-~pi~~H~Hnt~Gla~An~laAv~ 220 (592)
T PRK09282 146 TTS-P---VHTIEKYVELAKELEEMGCDSICIKDMAGLLTPYAAYELVKALKEEVD-LPVQLHSHCTSGLAPMTYLKAVE 220 (592)
T ss_pred ccC-C---CCCHHHHHHHHHHHHHcCCCEEEECCcCCCcCHHHHHHHHHHHHHhCC-CeEEEEEcCCCCcHHHHHHHHHH
Confidence 764 3 579999999999999999999999999999999999999999999997 79999999999999999999999
Q ss_pred cCCCEEeceee
Q 018252 345 VSPMHAKPCFT 355 (359)
Q Consensus 345 AGa~~ID~tl~ 355 (359)
|||++||+|+.
T Consensus 221 aGad~vD~ai~ 231 (592)
T PRK09282 221 AGVDIIDTAIS 231 (592)
T ss_pred hCCCEEEeecc
Confidence 99999999986
No 39
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=100.00 E-value=1.1e-36 Score=318.17 Aligned_cols=214 Identities=17% Similarity=0.213 Sum_probs=181.4
Q ss_pred CCCccEEEeCCCcccCCCC-CCCCCHHHHHHHHHHHHhCCCCEEEEeccCCCC-CcCCC-CCHHHHHHHhh-hcCCCeEE
Q 018252 123 IPRFVKIVEVGPRDGLQNE-KNTVPTGVKVELIRRLVSSGLPVVEATSFVSPK-WVPQL-ADARDVMEAVR-DLEGARLP 198 (359)
Q Consensus 123 ~p~~V~I~D~TLRDG~Q~~-~~~~~~~~k~~ia~~L~~aGv~~IEvG~fvspk-~vPq~-~D~~ev~~~l~-~~~~~~l~ 198 (359)
|.++|+|+|||||||.|+. +.+|++++|+.|++.|+++|++.||+|..+.-. .+|.+ .|..+.++.++ ..+++++.
T Consensus 1 m~k~v~i~DtTLRDG~Qs~~~tr~~~~d~l~ia~~ld~~G~~siE~~GGatf~~~~~~~~e~p~e~lr~l~~~~~~~~lq 80 (593)
T PRK14040 1 MSKPLAITDVVLRDAHQSLFATRLRLDDMLPIAAKLDKVGYWSLESWGGATFDACIRFLGEDPWERLRELKKAMPNTPQQ 80 (593)
T ss_pred CCCccEEEECCcccccccccccccCHHHHHHHHHHHHHcCCCEEEecCCcchhhhccccCCCHHHHHHHHHHhCCCCeEE
Confidence 3568999999999999999 789999999999999999999999996321111 11222 35555555555 57888887
Q ss_pred EEeC--C----------h--HhHHHHHHcCCCEEEEecCCchHHHHhhhcCCHHHHHHHHHHHHHHHHhCCCcEEEEEee
Q 018252 199 VLTP--N----------L--KGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSC 264 (359)
Q Consensus 199 ~l~~--n----------~--~gie~a~~aGv~~V~i~~s~S~~~~~~n~~~t~~e~l~~i~~~i~~Ak~~G~~V~~~is~ 264 (359)
.|+| | . .+++.+.++|++.|++|.+.++. +++...+++||++|..++++|+.
T Consensus 81 ml~Rg~n~vg~~~ypddvv~~~v~~a~~~Gid~~rifd~lnd~--------------~~~~~ai~~ak~~G~~~~~~i~y 146 (593)
T PRK14040 81 MLLRGQNLLGYRHYADDVVERFVERAVKNGMDVFRVFDAMNDP--------------RNLETALKAVRKVGAHAQGTLSY 146 (593)
T ss_pred EEecCcceeccccCcHHHHHHHHHHHHhcCCCEEEEeeeCCcH--------------HHHHHHHHHHHHcCCeEEEEEEE
Confidence 7776 1 1 35888999999999999987774 35678899999999999998885
Q ss_pred eecCCCCCCCCHHHHHHHHHHHHHCCcCEEEEcCCCCCCcHHHHHHHHHHHHHhCCCceEEEEeCCCCCcHHHHHHHHHH
Q 018252 265 VVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQ 344 (359)
Q Consensus 265 ~fg~~~~~r~~~e~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~lv~~l~~~~p~~~L~~H~HNd~GLAlANalaAv~ 344 (359)
.++. .++++++.++++++.++|+++|+|+||+|.++|.+++++++++++.++ ++|++|+|||+|||+||+++|++
T Consensus 147 t~~p----~~~~~~~~~~a~~l~~~Gad~i~i~Dt~G~l~P~~~~~lv~~lk~~~~-~pi~~H~Hnt~GlA~An~laAie 221 (593)
T PRK14040 147 TTSP----VHTLQTWVDLAKQLEDMGVDSLCIKDMAGLLKPYAAYELVSRIKKRVD-VPLHLHCHATTGLSTATLLKAIE 221 (593)
T ss_pred eeCC----ccCHHHHHHHHHHHHHcCCCEEEECCCCCCcCHHHHHHHHHHHHHhcC-CeEEEEECCCCchHHHHHHHHHH
Confidence 5432 568999999999999999999999999999999999999999999985 79999999999999999999999
Q ss_pred cCCCEEeceee
Q 018252 345 VSPMHAKPCFT 355 (359)
Q Consensus 345 AGa~~ID~tl~ 355 (359)
|||++||+|+.
T Consensus 222 AGa~~vD~ai~ 232 (593)
T PRK14040 222 AGIDGVDTAIS 232 (593)
T ss_pred cCCCEEEeccc
Confidence 99999999985
No 40
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=100.00 E-value=3.6e-35 Score=298.01 Aligned_cols=214 Identities=19% Similarity=0.206 Sum_probs=181.0
Q ss_pred CCCccEEEeCCCcccCCCC-CCCCCHHHHHHHHHHHHhCCCCEEEEeccCCCCC-cCC-CCCHHHHHHHhh-hcCCCeEE
Q 018252 123 IPRFVKIVEVGPRDGLQNE-KNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKW-VPQ-LADARDVMEAVR-DLEGARLP 198 (359)
Q Consensus 123 ~p~~V~I~D~TLRDG~Q~~-~~~~~~~~k~~ia~~L~~aGv~~IEvG~fvspk~-vPq-~~D~~ev~~~l~-~~~~~~l~ 198 (359)
+.++|+|+|+|||||.|+. ..+|++++++.|++.|+++|++.||++..+.-.. +.- ..|..+.++.++ .+|++.+.
T Consensus 9 ~~~~v~i~DtTlRDg~QSl~atr~~t~d~l~ia~~ld~~G~~siE~wGGAtfd~~~rfl~edpwerlr~~r~~~~nt~lq 88 (468)
T PRK12581 9 MQQQVAITETVLRDGHQSLMATRLSIEDMLPVLTILDKIGYYSLECWGGATFDACIRFLNEDPWERLRTLKKGLPNTRLQ 88 (468)
T ss_pred cCCceEEEECCccchhhhccccCCCHHHHHHHHHHHHhcCCCEEEecCCcchhhhhcccCCCHHHHHHHHHHhCCCCcee
Confidence 4578999999999999995 6889999999999999999999999974322110 001 245556566665 57999999
Q ss_pred EEeC--Ch-------Hh-----HHHHHHcCCCEEEEecCCchHHHHhhhcCCHHHHHHHHHHHHHHHHhCCCcEEEEEee
Q 018252 199 VLTP--NL-------KG-----FEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSC 264 (359)
Q Consensus 199 ~l~~--n~-------~g-----ie~a~~aGv~~V~i~~s~S~~~~~~n~~~t~~e~l~~i~~~i~~Ak~~G~~V~~~is~ 264 (359)
.++| |. .+ ++.|.+.|++.+++|.+.++ ++.++..++.+|++|..+.+.++.
T Consensus 89 mLlRG~n~vgy~~ypddvv~~fv~~a~~~Gidi~Rifd~lnd--------------~~n~~~ai~~ak~~G~~~~~~i~y 154 (468)
T PRK12581 89 MLLRGQNLLGYRHYADDIVDKFISLSAQNGIDVFRIFDALND--------------PRNIQQALRAVKKTGKEAQLCIAY 154 (468)
T ss_pred eeeccccccCccCCcchHHHHHHHHHHHCCCCEEEEcccCCC--------------HHHHHHHHHHHHHcCCEEEEEEEE
Confidence 9987 32 24 77889999999999987654 345678899999999999988886
Q ss_pred eecCCCCCCCCHHHHHHHHHHHHHCCcCEEEEcCCCCCCcHHHHHHHHHHHHHhCCCceEEEEeCCCCCcHHHHHHHHHH
Q 018252 265 VVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQ 344 (359)
Q Consensus 265 ~fg~~~~~r~~~e~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~lv~~l~~~~p~~~L~~H~HNd~GLAlANalaAv~ 344 (359)
..+ ..++.+|++++++++.++||++|+|+||+|.++|.+++++++++++ .++++|++|+|||+|||+||+++|++
T Consensus 155 t~s----p~~t~~y~~~~a~~l~~~Gad~I~IkDtaG~l~P~~v~~Lv~alk~-~~~~pi~~H~Hnt~GlA~An~laAie 229 (468)
T PRK12581 155 TTS----PVHTLNYYLSLVKELVEMGADSICIKDMAGILTPKAAKELVSGIKA-MTNLPLIVHTHATSGISQMTYLAAVE 229 (468)
T ss_pred EeC----CcCcHHHHHHHHHHHHHcCCCEEEECCCCCCcCHHHHHHHHHHHHh-ccCCeEEEEeCCCCccHHHHHHHHHH
Confidence 553 2679999999999999999999999999999999999999999988 45689999999999999999999999
Q ss_pred cCCCEEeceee
Q 018252 345 VSPMHAKPCFT 355 (359)
Q Consensus 345 AGa~~ID~tl~ 355 (359)
+||++||+|+.
T Consensus 230 AGad~vD~ai~ 240 (468)
T PRK12581 230 AGADRIDTALS 240 (468)
T ss_pred cCCCEEEeecc
Confidence 99999999985
No 41
>TIGR02146 LysS_fung_arch homocitrate synthase. This model includes the yeast LYS21 gene which carries out the first step of the alpha-aminoadipate (AAA) lysine biosynthesis pathway. A related pathway is found in Thermus thermophilus. This enzyme is closely related to 2-isopropylmalate synthase (LeuA) and citramalate synthase (CimA), both of which are present in the euryarchaeota. Some archaea have a separate homocitrate synthase (AksA) which also synthesizes longer homocitrate analogs.
Probab=100.00 E-value=3.9e-33 Score=273.05 Aligned_cols=216 Identities=18% Similarity=0.213 Sum_probs=193.3
Q ss_pred EEeCCCcccCCCCCCCCCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcCCCCCHHHHHHHhhhcCCCeEEEEeCC-hHhH
Q 018252 129 IVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPVLTPN-LKGF 207 (359)
Q Consensus 129 I~D~TLRDG~Q~~~~~~~~~~k~~ia~~L~~aGv~~IEvG~fvspk~vPq~~D~~ev~~~l~~~~~~~l~~l~~n-~~gi 207 (359)
|+|||||||.|..+..|++++|+++++.|+++|++.||+|++. ..|+..+..+++...+ ....+.+++++ .+++
T Consensus 1 i~D~TlRDG~q~~~~~~~~~~ki~i~~~l~~~Gv~~iE~g~p~---~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 75 (344)
T TIGR02146 1 IIDSTLREGEQFPGANFSTEQKIEIAKALDEFGIDYIEVTHPA---ASKQSRIDIEIIASLG--LKANIVTHIRCRLDDA 75 (344)
T ss_pred CCCCCCCccCcCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCC---CCHHHHHHHHHHHhcC--CCcEEEEECCCCHHHH
Confidence 6899999999999999999999999999999999999999953 3355444333333333 33568889997 6899
Q ss_pred HHHHHcCCCEEEEecCCchHHHHhhhcCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHH
Q 018252 208 EAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELH 287 (359)
Q Consensus 208 e~a~~aGv~~V~i~~s~S~~~~~~n~~~t~~e~l~~i~~~i~~Ak~~G~~V~~~is~~fg~~~~~r~~~e~l~~~a~~l~ 287 (359)
+.+.++|++.+.++.+.|+.+...+.+++.++..+.+...++.|++.|+.+..++. ++.+.+++++.++++.+.
T Consensus 76 ~~a~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~~~e~a~~~g~~~~~~~~------~~~~~~~~~~~~~~d~~~ 149 (344)
T TIGR02146 76 KVAVELGVDGIDIFFGTSKLLRIAEHRSDAKSILESARETIEYAKSAGLEVRFSAE------DTFRSELADLLSIYETVG 149 (344)
T ss_pred HHHHHCCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEe------eCCCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999876665 345889999999999999
Q ss_pred HCCcCEEEEcCCCCCCcHHHHHHHHHHHHHhCCCceEEEEeCCCCCcHHHHHHHHHHcCCCEEeceee
Q 018252 288 DMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQVSPMHAKPCFT 355 (359)
Q Consensus 288 ~~Gad~I~L~DT~G~~~P~~v~~lv~~l~~~~p~~~L~~H~HNd~GLAlANalaAv~AGa~~ID~tl~ 355 (359)
++|+++|+++||.|.++|.++..++..+++..+.+++++|+|||+|+|+||+++|+.+||+++|+|+.
T Consensus 150 ~~g~~~i~~~dt~g~~~p~~v~~~v~~~~d~~~~~~~~~H~Hn~~g~avant~~al~~ga~~~d~s~~ 217 (344)
T TIGR02146 150 VFGVDRVGIADTVGKAAPRQVYELIRTVVRVVPGVDIELHAHNDTGCAVANAYNAIEGGATIVDTTVL 217 (344)
T ss_pred HCCCCEEEEcCCCCcCCHHHHHHHHHHHHHhCCCCeEEEEecCCCCHHHHHHHHHHHcCCCEEEEEee
Confidence 99999999999999999999999999999998889999999999999999999999999999999965
No 42
>PRK12999 pyruvate carboxylase; Reviewed
Probab=100.00 E-value=3e-33 Score=310.60 Aligned_cols=217 Identities=18% Similarity=0.160 Sum_probs=181.9
Q ss_pred CCccEEEeCCCcccCCCC-CCCCCHHHHHHHHHHHHhC--CCCEEEEeccCCCC-CcCCC-CCHHHHHHHhh-hcCCCeE
Q 018252 124 PRFVKIVEVGPRDGLQNE-KNTVPTGVKVELIRRLVSS--GLPVVEATSFVSPK-WVPQL-ADARDVMEAVR-DLEGARL 197 (359)
Q Consensus 124 p~~V~I~D~TLRDG~Q~~-~~~~~~~~k~~ia~~L~~a--Gv~~IEvG~fvspk-~vPq~-~D~~ev~~~l~-~~~~~~l 197 (359)
.++|+|+|+|||||.|++ +.+|++++|++|++.|+++ |++.||+|+.+.-+ .++.+ .|..+.++.++ .++++.+
T Consensus 530 ~~~v~i~DtTlRDg~Qs~~atr~~~~d~l~ia~~l~~~~~g~~siE~~ggatfd~~~r~l~e~p~erl~~~r~~~~~~~~ 609 (1146)
T PRK12999 530 QKRVLLTDTTFRDAHQSLLATRVRTKDLLRIAPATARLLPNLFSLEMWGGATFDVAYRFLKEDPWERLAELREAAPNVLF 609 (1146)
T ss_pred cCCcEEEECCcchhhhccccccCCHHHHHHHHHHHHHHhCCCCEEEeeCCcchhhhccccCCCHHHHHHHHHHhCCCCeE
Confidence 478999999999999998 7999999999999999999 99999999732110 11222 45556566666 4799999
Q ss_pred EEEeCC------------h-H-hHHHHHHcCCCEEEEecCCchHHHHhhhcCCHHHHHHHHHHHHHHHHhCCCcEEEEEe
Q 018252 198 PVLTPN------------L-K-GFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVS 263 (359)
Q Consensus 198 ~~l~~n------------~-~-gie~a~~aGv~~V~i~~s~S~~~~~~n~~~t~~e~l~~i~~~i~~Ak~~G~~V~~~is 263 (359)
..|+|. . + .++.++++|++.|++|.+.+++ +.++..++.+|+.|..+.+.++
T Consensus 610 q~l~Rg~n~vgy~~yp~~v~~~~i~~a~~~Gid~~rifd~lnd~--------------~~~~~~i~~vk~~g~~~~~~i~ 675 (1146)
T PRK12999 610 QMLLRGSNAVGYTNYPDNVVRAFVREAAAAGIDVFRIFDSLNWV--------------ENMRVAIDAVRETGKIAEAAIC 675 (1146)
T ss_pred EEEecccccccccCCCchHHHHHHHHHHHcCCCEEEEeccCChH--------------HHHHHHHHHHHHcCCeEEEEEE
Confidence 999983 2 3 3889999999999999887663 3466788899999987777777
Q ss_pred ee--ecCCCCCCCCHHHHHHHHHHHHHCCcCEEEEcCCCCCCcHHHHHHHHHHHHHhCCCceEEEEeCCCCCcHHHHHHH
Q 018252 264 CV--VGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILI 341 (359)
Q Consensus 264 ~~--fg~~~~~r~~~e~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~lv~~l~~~~p~~~L~~H~HNd~GLAlANala 341 (359)
.. +..|..+.+++++++++++++.++|+++|+|+||+|.++|.++++++++++++++ ++|++|+|||+|||+||+++
T Consensus 676 ytg~~~d~~~~~~~~~~~~~~a~~l~~~Ga~~i~ikDt~G~l~P~~~~~lv~~lk~~~~-ipi~~H~Hnt~Gla~an~la 754 (1146)
T PRK12999 676 YTGDILDPARAKYDLDYYVDLAKELEKAGAHILAIKDMAGLLKPAAAYELVSALKEEVD-LPIHLHTHDTSGNGLATYLA 754 (1146)
T ss_pred EEecCCCCCCCCCCHHHHHHHHHHHHHcCCCEEEECCccCCCCHHHHHHHHHHHHHHcC-CeEEEEeCCCCchHHHHHHH
Confidence 43 1123333489999999999999999999999999999999999999999999995 89999999999999999999
Q ss_pred HHHcCCCEEeceee
Q 018252 342 SLQVSPMHAKPCFT 355 (359)
Q Consensus 342 Av~AGa~~ID~tl~ 355 (359)
|++|||++||+|+.
T Consensus 755 A~~aGad~vD~av~ 768 (1146)
T PRK12999 755 AAEAGVDIVDVAVA 768 (1146)
T ss_pred HHHhCCCEEEecch
Confidence 99999999999985
No 43
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=100.00 E-value=3.4e-33 Score=291.34 Aligned_cols=212 Identities=18% Similarity=0.199 Sum_probs=181.2
Q ss_pred CccEEEeCCCcccCCCC-CCCCCHHHHHHHHHHHHhCCCCEEEEeccCCCC-CcCC-CCCHHHHHHHhh-hcCCCeEEEE
Q 018252 125 RFVKIVEVGPRDGLQNE-KNTVPTGVKVELIRRLVSSGLPVVEATSFVSPK-WVPQ-LADARDVMEAVR-DLEGARLPVL 200 (359)
Q Consensus 125 ~~V~I~D~TLRDG~Q~~-~~~~~~~~k~~ia~~L~~aGv~~IEvG~fvspk-~vPq-~~D~~ev~~~l~-~~~~~~l~~l 200 (359)
++|+|+|+|||||.|+. ..+|++++.+.|++.|+++|+..||+|..+.-. .+.. ..|..+.++.++ .+|++.+..|
T Consensus 2 ~~~~i~DttlRDg~QSl~atr~~t~d~~~ia~~~d~~g~~siE~~gGatfd~~~rfl~edpwerl~~~r~~~pnt~lqmL 81 (596)
T PRK14042 2 SKTFITDVTLRDAHQCLIATRMRTEDMLPICNKMDDVGFWAMEVWGGATFDACLRFLKEDPWSRLRQLRQALPNTQLSML 81 (596)
T ss_pred CceEEEECCcchhhhhhhhcCCCHHHHHHHHHHHHhcCCCEEEeeCCcccceeecccCCCHHHHHHHHHHhCCCCceEEE
Confidence 57999999999999966 799999999999999999999999998632211 0111 256667677776 4799999888
Q ss_pred eC--Ch------------HhHHHHHHcCCCEEEEecCCchHHHHhhhcCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeee
Q 018252 201 TP--NL------------KGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVV 266 (359)
Q Consensus 201 ~~--n~------------~gie~a~~aGv~~V~i~~s~S~~~~~~n~~~t~~e~l~~i~~~i~~Ak~~G~~V~~~is~~f 266 (359)
+| |. ..++.|.+.|++.+++|.+..+. +.++..++.+|+.|..+.++||...
T Consensus 82 ~Rg~N~vGy~~~~d~vv~~~v~~a~~~Gidv~Rifd~lnd~--------------~n~~~~i~~~k~~G~~~~~~i~yt~ 147 (596)
T PRK14042 82 LRGQNLLGYRNYADDVVRAFVKLAVNNGVDVFRVFDALNDA--------------RNLKVAIDAIKSHKKHAQGAICYTT 147 (596)
T ss_pred eccccccccccCChHHHHHHHHHHHHcCCCEEEEcccCcch--------------HHHHHHHHHHHHcCCEEEEEEEecC
Confidence 85 32 24678899999999999987664 3456788999999999999988433
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHCCcCEEEEcCCCCCCcHHHHHHHHHHHHHhCCCceEEEEeCCCCCcHHHHHHHHHHcC
Q 018252 267 GCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQVS 346 (359)
Q Consensus 267 g~~~~~r~~~e~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~lv~~l~~~~p~~~L~~H~HNd~GLAlANalaAv~AG 346 (359)
. ..++++++.++++++.++|+++|+|+||+|.++|.++++++++++++++ ++|++|+|||+|||+||+++|++||
T Consensus 148 -s---p~~t~e~~~~~ak~l~~~Gad~I~IkDtaG~l~P~~v~~lv~alk~~~~-ipi~~H~Hnt~Gla~an~laAieaG 222 (596)
T PRK14042 148 -S---PVHTLDNFLELGKKLAEMGCDSIAIKDMAGLLTPTVTVELYAGLKQATG-LPVHLHSHSTSGLASICHYEAVLAG 222 (596)
T ss_pred -C---CCCCHHHHHHHHHHHHHcCCCEEEeCCcccCCCHHHHHHHHHHHHhhcC-CEEEEEeCCCCCcHHHHHHHHHHhC
Confidence 2 2689999999999999999999999999999999999999999999986 8999999999999999999999999
Q ss_pred CCEEeceee
Q 018252 347 PMHAKPCFT 355 (359)
Q Consensus 347 a~~ID~tl~ 355 (359)
|++||+|+.
T Consensus 223 ad~iD~ai~ 231 (596)
T PRK14042 223 CNHIDTAIS 231 (596)
T ss_pred CCEEEeccc
Confidence 999999985
No 44
>TIGR01235 pyruv_carbox pyruvate carboxylase. This enzyme plays a role in gluconeogensis but not glycolysis.
Probab=99.97 E-value=8.2e-30 Score=282.46 Aligned_cols=215 Identities=16% Similarity=0.148 Sum_probs=181.6
Q ss_pred CCccEEEeCCCcccCCCC-CCCCCHHHHHHHHHHHHh--CCCCEEEEeccC----CCCCcCCCCCHHHHHHHhh-hcCCC
Q 018252 124 PRFVKIVEVGPRDGLQNE-KNTVPTGVKVELIRRLVS--SGLPVVEATSFV----SPKWVPQLADARDVMEAVR-DLEGA 195 (359)
Q Consensus 124 p~~V~I~D~TLRDG~Q~~-~~~~~~~~k~~ia~~L~~--aGv~~IEvG~fv----spk~vPq~~D~~ev~~~l~-~~~~~ 195 (359)
.++|+|+|+|+|||.|+. ..++.+++.+.|++.+++ .|+..+|++..+ .-++. ..|+.+-++.++ .+|++
T Consensus 528 ~~~~~~tdtt~RD~hQSl~atr~rt~d~~~ia~~~~~~~~g~~s~E~wggAtfd~~~rfl--~EdPwerl~~~r~~~pn~ 605 (1143)
T TIGR01235 528 QKRVLLTDTTFRDAHQSLLATRVRTHDLAKIAPTTSHALPNLFSLECWGGATFDVAMRFL--HEDPWERLEDLRKGVPNI 605 (1143)
T ss_pred cCCeeEEECcccchhhhhhhhCCCHHHHHHHHHHHHHhcCCceEEEeeCCccHHHHHHHh--cCCHHHHHHHHHHhCCCC
Confidence 367999999999999999 699999999999999999 599999998632 21111 156666666666 47999
Q ss_pred eEEEEeC--ChH------------hHHHHHHcCCCEEEEecCCchHHHHhhhcCCHHHHHHHHHHHHHHHHhCCCcEEEE
Q 018252 196 RLPVLTP--NLK------------GFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGY 261 (359)
Q Consensus 196 ~l~~l~~--n~~------------gie~a~~aGv~~V~i~~s~S~~~~~~n~~~t~~e~l~~i~~~i~~Ak~~G~~V~~~ 261 (359)
.+..|.| |.- -++.+.+.|++.+++|.+.++ +++++..++.+|+.|..++++
T Consensus 606 ~~qml~Rg~n~vgy~~ypd~vv~~f~~~~~~~GidifrifD~lN~--------------~~n~~~~~~~~~~~g~~~~~~ 671 (1143)
T TIGR01235 606 LFQMLLRGANGVGYTNYPDNVVKYFVKQAAQGGIDIFRVFDSLNW--------------VENMRVGMDAVAEAGKVVEAA 671 (1143)
T ss_pred ceeeeeccccccCccCCCHHHHHHHHHHHHHcCCCEEEECccCcC--------------HHHHHHHHHHHHHcCCEEEEE
Confidence 9998887 332 256778899999999998655 345678899999999999999
Q ss_pred Eeeeec--CCCCCCCCHHHHHHHHHHHHHCCcCEEEEcCCCCCCcHHHHHHHHHHHHHhCCCceEEEEeCCCCCcHHHHH
Q 018252 262 VSCVVG--CPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNI 339 (359)
Q Consensus 262 is~~fg--~~~~~r~~~e~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~lv~~l~~~~p~~~L~~H~HNd~GLAlANa 339 (359)
||..=. .|....++++|++++++++.++|+++|+|+||+|.++|.+++++++++++++ +++|++|+|||+|||+||+
T Consensus 672 i~yt~~~~d~~~~~~~l~y~~~~ak~l~~~Gad~I~ikDt~Gll~P~~~~~Lv~~lk~~~-~~pi~~H~Hdt~Gla~an~ 750 (1143)
T TIGR01235 672 ICYTGDILDPARPKYDLKYYTNLAVELEKAGAHILGIKDMAGLLKPAAAKLLIKALREKT-DLPIHFHTHDTSGIAVASM 750 (1143)
T ss_pred EEEeccCCCcCCCCCCHHHHHHHHHHHHHcCCCEEEECCCcCCcCHHHHHHHHHHHHHhc-CCeEEEEECCCCCcHHHHH
Confidence 985411 1222247999999999999999999999999999999999999999999999 4899999999999999999
Q ss_pred HHHHHcCCCEEeceee
Q 018252 340 LISLQVSPMHAKPCFT 355 (359)
Q Consensus 340 laAv~AGa~~ID~tl~ 355 (359)
++|++|||++||+|+.
T Consensus 751 laA~eaGad~vD~ai~ 766 (1143)
T TIGR01235 751 LAAVEAGVDVVDVAVD 766 (1143)
T ss_pred HHHHHhCCCEEEecch
Confidence 9999999999999984
No 45
>COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion]
Probab=99.97 E-value=7.3e-30 Score=250.35 Aligned_cols=211 Identities=21% Similarity=0.254 Sum_probs=179.9
Q ss_pred CCccEEEeCCCcccCCCC-CCCCCHHHHHHHHHHHHhCCCCEEEEeccCC----CCCcCCCCCHHHHHHHhh-hcCCCeE
Q 018252 124 PRFVKIVEVGPRDGLQNE-KNTVPTGVKVELIRRLVSSGLPVVEATSFVS----PKWVPQLADARDVMEAVR-DLEGARL 197 (359)
Q Consensus 124 p~~V~I~D~TLRDG~Q~~-~~~~~~~~k~~ia~~L~~aGv~~IEvG~fvs----pk~vPq~~D~~ev~~~l~-~~~~~~l 197 (359)
-++|+|+|++||||.|+. ..++.+++.+.|++.|+++|+..+|++..+. -++. ..|+.+-++.++ .++++.+
T Consensus 3 ~k~i~itdt~lRDghQSl~ATRmrt~DmlPi~e~lD~~G~~slE~WGGATFDaciRfL--nEDPWeRLr~lk~~~~nT~L 80 (472)
T COG5016 3 MKKIKITDTVLRDGHQSLLATRMRTEDMLPIAEALDKVGYWSLEVWGGATFDACIRFL--NEDPWERLRELKKAVPNTKL 80 (472)
T ss_pred cceeeeEeeeechHHHHHHHHHHhHHhhHHHHHHHHhcCeeEEEecCCccHHHHHHHh--cCCHHHHHHHHHHhCCCcHH
Confidence 367999999999999999 7999999999999999999999999985321 1111 157666666666 4677777
Q ss_pred EEEeC--ChH------------hHHHHHHcCCCEEEEecCCchHHHHhhhcCCHHHHHHHHHHHHHHHHhCCCcEEEEEe
Q 018252 198 PVLTP--NLK------------GFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVS 263 (359)
Q Consensus 198 ~~l~~--n~~------------gie~a~~aGv~~V~i~~s~S~~~~~~n~~~t~~e~l~~i~~~i~~Ak~~G~~V~~~is 263 (359)
..|.| |.- -++.+.+.|++.+++|.+.++.. +++.+++.+|++|..+++.+|
T Consensus 81 QMLlRGQNlvGYrhyaDDvVe~Fv~ka~~nGidvfRiFDAlND~R--------------Nl~~ai~a~kk~G~h~q~~i~ 146 (472)
T COG5016 81 QMLLRGQNLVGYRHYADDVVEKFVEKAAENGIDVFRIFDALNDVR--------------NLKTAIKAAKKHGAHVQGTIS 146 (472)
T ss_pred HHHHccCccccccCCchHHHHHHHHHHHhcCCcEEEechhccchh--------------HHHHHHHHHHhcCceeEEEEE
Confidence 77666 431 25788889999999999876653 456788999999999999998
Q ss_pred eeecCCCCCCCCHHHHHHHHHHHHHCCcCEEEEcCCCCCCcHHHHHHHHHHHHHhCCCceEEEEeCCCCCcHHHHHHHHH
Q 018252 264 CVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISL 343 (359)
Q Consensus 264 ~~fg~~~~~r~~~e~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~lv~~l~~~~p~~~L~~H~HNd~GLAlANalaAv 343 (359)
...+ | -++.++++++++++.++|+|.|+++|+.|+++|...+++|+++|+.++ ++|.+|+|.|-|||.++.++|+
T Consensus 147 YT~s-P---vHt~e~yv~~akel~~~g~DSIciKDmaGlltP~~ayelVk~iK~~~~-~pv~lHtH~TsG~a~m~ylkAv 221 (472)
T COG5016 147 YTTS-P---VHTLEYYVELAKELLEMGVDSICIKDMAGLLTPYEAYELVKAIKKELP-VPVELHTHATSGMAEMTYLKAV 221 (472)
T ss_pred eccC-C---cccHHHHHHHHHHHHHcCCCEEEeecccccCChHHHHHHHHHHHHhcC-CeeEEecccccchHHHHHHHHH
Confidence 5433 2 479999999999999999999999999999999999999999999999 7999999999999999999999
Q ss_pred HcCCCEEeceee
Q 018252 344 QVSPMHAKPCFT 355 (359)
Q Consensus 344 ~AGa~~ID~tl~ 355 (359)
+||||.||+++.
T Consensus 222 EAGvD~iDTAis 233 (472)
T COG5016 222 EAGVDGIDTAIS 233 (472)
T ss_pred HhCcchhhhhhc
Confidence 999999999874
No 46
>COG1038 PycA Pyruvate carboxylase [Energy production and conversion]
Probab=99.84 E-value=5e-21 Score=199.86 Aligned_cols=215 Identities=18% Similarity=0.202 Sum_probs=172.7
Q ss_pred CCccEEEeCCCcccCCCC-CCCCCHHHHHHHHHHHHh--CCCCEEEEec---c-CCCCCcCCCCCHHHHHHHhhh-cCCC
Q 018252 124 PRFVKIVEVGPRDGLQNE-KNTVPTGVKVELIRRLVS--SGLPVVEATS---F-VSPKWVPQLADARDVMEAVRD-LEGA 195 (359)
Q Consensus 124 p~~V~I~D~TLRDG~Q~~-~~~~~~~~k~~ia~~L~~--aGv~~IEvG~---f-vspk~vPq~~D~~ev~~~l~~-~~~~ 195 (359)
.+.|.+.|+|+||+.|+. ..++.+-+...|+..... .....+|++. | ++.++. ..|..+-++.+++ +||+
T Consensus 533 q~~vlltDTT~RDaHQSLLATRvRt~dl~~IA~~~a~~lp~lfSlE~WGGATfDVamRFL--~EdPWeRL~~lRk~~PNv 610 (1149)
T COG1038 533 QKAVLLTDTTFRDAHQSLLATRVRTHDLARIAPATARALPQLFSLEMWGGATFDVAMRFL--KEDPWERLERLRKAVPNV 610 (1149)
T ss_pred ccceeeeecchhhHHHHHHHHHHhhhhhhhhhHHHHHhhhhhhchhhhCCchHHHHHHHh--ccCHHHHHHHHHHhCCch
Confidence 367999999999999999 688999999999999888 4666778864 2 333322 1466666677764 6877
Q ss_pred eEEEEeC--Ch------------HhHHHHHHcCCCEEEEecCCchHHHHhhhcCCHHHHHHHHHHHHHHHHhCCCcEEEE
Q 018252 196 RLPVLTP--NL------------KGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGY 261 (359)
Q Consensus 196 ~l~~l~~--n~------------~gie~a~~aGv~~V~i~~s~S~~~~~~n~~~t~~e~l~~i~~~i~~Ak~~G~~V~~~ 261 (359)
-+..|.| |- .-++.|...|+|.+++|.+.+. ++.++..+++.++.|.-+.++
T Consensus 611 lfQMLLRgaN~VgY~nyPDnVi~~Fvkqaa~~GIDvFRiFDsLNw--------------v~~M~vaidAV~e~gkv~Eat 676 (1149)
T COG1038 611 LFQMLLRGANGVGYKNYPDNVIREFVKQAAKSGIDVFRIFDSLNW--------------VEQMRVAIDAVREAGKVAEAT 676 (1149)
T ss_pred HHHHHhccccccCcCCCchHHHHHHHHHHHhcCccEEEeehhhcc--------------hhhhhhHHHHHHhcCCeEEEE
Confidence 6666655 21 2367888899999999987533 345667788888999777888
Q ss_pred Eeeeec--CCCCCCCCHHHHHHHHHHHHHCCcCEEEEcCCCCCCcHHHHHHHHHHHHHhCCCceEEEEeCCCCCcHHHHH
Q 018252 262 VSCVVG--CPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNI 339 (359)
Q Consensus 262 is~~fg--~~~~~r~~~e~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~lv~~l~~~~p~~~L~~H~HNd~GLAlANa 339 (359)
+|..=. .|....++.+|+.++++++.++|+.++.++|+.|.+-|...+.||++||+.+ ++||++|.||+-|.++|..
T Consensus 677 iCYTGDildp~r~kY~L~YY~~lA~el~~~GaHIlaIKDMAGLLKP~AA~~Li~aLr~~~-dlPIHlHTHDTsG~~~at~ 755 (1149)
T COG1038 677 ICYTGDILDPGRKKYTLDYYVKLAKELEKAGAHILAIKDMAGLLKPAAAYRLISALRETV-DLPIHLHTHDTSGNGVATY 755 (1149)
T ss_pred EEeccccCCCCcccccHHHHHHHHHHHHhcCCcEEEehhhhhccCHHHHHHHHHHHHHhc-CCceEEeccCCCccHHHHH
Confidence 873211 2222347999999999999999999999999999999999999999999998 5899999999999999999
Q ss_pred HHHHHcCCCEEeceee
Q 018252 340 LISLQVSPMHAKPCFT 355 (359)
Q Consensus 340 laAv~AGa~~ID~tl~ 355 (359)
++|++||+|+||+++.
T Consensus 756 ~aA~~AGvDivD~A~~ 771 (1149)
T COG1038 756 LAAVEAGVDIVDVAMA 771 (1149)
T ss_pred HHHHHcCCchhhhhhh
Confidence 9999999999998764
No 47
>KOG0369 consensus Pyruvate carboxylase [Energy production and conversion]
Probab=99.76 E-value=7.5e-18 Score=173.51 Aligned_cols=214 Identities=18% Similarity=0.140 Sum_probs=167.5
Q ss_pred CccEEEeCCCcccCCCC-CCCCCHHHHHHHHHHHHh--CCCCEEEEecc----CCCCCcCCCCCHHHHHHHhhh-cCCCe
Q 018252 125 RFVKIVEVGPRDGLQNE-KNTVPTGVKVELIRRLVS--SGLPVVEATSF----VSPKWVPQLADARDVMEAVRD-LEGAR 196 (359)
Q Consensus 125 ~~V~I~D~TLRDG~Q~~-~~~~~~~~k~~ia~~L~~--aGv~~IEvG~f----vspk~vPq~~D~~ev~~~l~~-~~~~~ 196 (359)
+...|+|+|.||..|+. ..+..+-+-..|+..... +|...+|.+.. ++.++.- ....+-++.+++ +||+.
T Consensus 558 ~g~llmDTT~RDAHQSLLATRVRthDl~~IaPyvah~f~~lfslE~WGGATFDVamRFLh--EcPWeRL~~lRkliPNIP 635 (1176)
T KOG0369|consen 558 PGLLLMDTTFRDAHQSLLATRVRTHDLAKIAPYVAHAFAGLFSLENWGGATFDVAMRFLH--ECPWERLRELRKLIPNIP 635 (1176)
T ss_pred CCceEeechhHHHHHHHHHHHhhhhhhhhcchHHHHHhhhhhhhhhcCCchhhHHHHHHh--cChHHHHHHHHHhCCCCc
Confidence 34689999999999998 577888888888887655 78889998642 3322210 233343444443 57766
Q ss_pred EEEEeC------------Ch--HhHHHHHHcCCCEEEEecCCchHHHHhhhcCCHHHHHHHHHHHHHHHHhCCCcEEEEE
Q 018252 197 LPVLTP------------NL--KGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYV 262 (359)
Q Consensus 197 l~~l~~------------n~--~gie~a~~aGv~~V~i~~s~S~~~~~~n~~~t~~e~l~~i~~~i~~Ak~~G~~V~~~i 262 (359)
+..+.| |. +-.|.|.+.|+|.+++|.+.+.. .++.--++.|++.|-.|.+.|
T Consensus 636 FQmLLRGANavgYssyPDNviykFce~Ak~nGmDiFRVFDsLN~l--------------pnl~lGmeAagkAGGVVEAai 701 (1176)
T KOG0369|consen 636 FQMLLRGANAVGYSSYPDNVIYKFCEQAKKNGMDIFRVFDSLNYL--------------PNLLLGMEAAGKAGGVVEAAI 701 (1176)
T ss_pred HHHHhcccccccccCCChhHHHHHHHHHHhcCcceeeehhhhhhh--------------hhhhhhHhhhhccCCeEEEEE
Confidence 655554 22 33588999999999999875443 334455677888899999988
Q ss_pred eeee--cCCCCCCCCHHHHHHHHHHHHHCCcCEEEEcCCCCCCcHHHHHHHHHHHHHhCCCceEEEEeCCCCCcHHHHHH
Q 018252 263 SCVV--GCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNIL 340 (359)
Q Consensus 263 s~~f--g~~~~~r~~~e~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~lv~~l~~~~p~~~L~~H~HNd~GLAlANal 340 (359)
+..= ..|--+.++.+|+..+++.+.++|...++++|+.|++-|....-||.++|+.+|++||++|.||+-|-|+|.-+
T Consensus 702 ~YtGDv~dp~rtKY~L~YY~nlad~lV~agtHiL~IKDMAG~lKP~aa~lLi~alRdk~PdlPiHvHtHDtsGagVAsMl 781 (1176)
T KOG0369|consen 702 CYTGDVLDPSRTKYNLDYYLNLADKLVKAGTHILGIKDMAGVLKPEAAKLLIGALRDKFPDLPIHVHTHDTSGAGVASML 781 (1176)
T ss_pred eeccccCCcccccccHHHHHHHHHHHHhccCeEEeehhhhcccCHHHHHHHHHHHHhhCCCCceEEeccCCccHHHHHHH
Confidence 7421 12222358999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCCEEecee
Q 018252 341 ISLQVSPMHAKPCF 354 (359)
Q Consensus 341 aAv~AGa~~ID~tl 354 (359)
++.+||||.||+++
T Consensus 782 aca~AGADVVDvA~ 795 (1176)
T KOG0369|consen 782 ACALAGADVVDVAV 795 (1176)
T ss_pred HHHHcCCceeeeec
Confidence 99999999999976
No 48
>PRK07028 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator; Validated
Probab=98.37 E-value=1.3e-05 Score=81.95 Aligned_cols=175 Identities=18% Similarity=0.179 Sum_probs=115.1
Q ss_pred CCCCCCCCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcCCCCCHHHHHHHhhhcCCCeEEEEeCC----hHhHHHHHHcC
Q 018252 139 QNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPVLTPN----LKGFEAAIAAG 214 (359)
Q Consensus 139 Q~~~~~~~~~~k~~ia~~L~~aGv~~IEvG~fvspk~vPq~~D~~ev~~~l~~~~~~~l~~l~~n----~~gie~a~~aG 214 (359)
|..-...+.++++++++.+.+.|++.||+|++... ....+.+.++.+..+...+...++- ..+++.++++|
T Consensus 7 ~~alD~~~~~~~~~~~~~~~~~Gv~~ie~g~p~~~-----~~~~~~i~~l~~~~~~~~ii~D~kl~d~g~~~v~~a~~aG 81 (430)
T PRK07028 7 QVALDLLELDRAVEIAKEAVAGGADWIEAGTPLIK-----SEGMNAIRTLRKNFPDHTIVADMKTMDTGAIEVEMAAKAG 81 (430)
T ss_pred EEEeccCCHHHHHHHHHHHHhcCCcEEEeCCHHHH-----HhhHHHHHHHHHHCCCCEEEEEeeeccchHHHHHHHHHcC
Confidence 33344588999999999999999999999852210 0123334333333344444444331 24899999999
Q ss_pred CCEEEEecCCchHHHHhhhcCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHHCCcCEE
Q 018252 215 AKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEI 294 (359)
Q Consensus 215 v~~V~i~~s~S~~~~~~n~~~t~~e~l~~i~~~i~~Ak~~G~~V~~~is~~fg~~~~~r~~~e~l~~~a~~l~~~Gad~I 294 (359)
++.|++....++. .+.+++++++++|+.+...+ ++++ ++ .+.++.+.+.|+|.|
T Consensus 82 AdgV~v~g~~~~~---------------~~~~~i~~a~~~G~~~~~g~---~s~~----t~----~e~~~~a~~~GaD~I 135 (430)
T PRK07028 82 ADIVCILGLADDS---------------TIEDAVRAARKYGVRLMADL---INVP----DP----VKRAVELEELGVDYI 135 (430)
T ss_pred CCEEEEecCCChH---------------HHHHHHHHHHHcCCEEEEEe---cCCC----CH----HHHHHHHHhcCCCEE
Confidence 9999986432221 13567888899999874321 1111 12 234577778999998
Q ss_pred EEcCCCCC---CcHHHHHHHHHHHHHhCCCceEEEEeCCCCCcHHHHHHHHHHcCCCEEe
Q 018252 295 SLGDTIGV---GTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQVSPMHAK 351 (359)
Q Consensus 295 ~L~DT~G~---~~P~~v~~lv~~l~~~~p~~~L~~H~HNd~GLAlANalaAv~AGa~~ID 351 (359)
.+. .|. ..+....+.++.+++.++ ++|.+|+ |....|+..++++||+.|=
T Consensus 136 ~~~--pg~~~~~~~~~~~~~l~~l~~~~~-iPI~a~G----GI~~~n~~~~l~aGAdgv~ 188 (430)
T PRK07028 136 NVH--VGIDQQMLGKDPLELLKEVSEEVS-IPIAVAG----GLDAETAAKAVAAGADIVI 188 (430)
T ss_pred EEE--eccchhhcCCChHHHHHHHHhhCC-CcEEEEC----CCCHHHHHHHHHcCCCEEE
Confidence 765 232 112233467777777766 7899998 9999999999999999764
No 49
>PRK07094 biotin synthase; Provisional
Probab=98.29 E-value=0.00017 Score=70.65 Aligned_cols=197 Identities=16% Similarity=0.145 Sum_probs=128.8
Q ss_pred CCCCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcCCCCCHHHHHHHhhhcCCCeEEEEe--CChHhHHHHHHcCCCEEEE
Q 018252 143 NTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPVLT--PNLKGFEAAIAAGAKEVAI 220 (359)
Q Consensus 143 ~~~~~~~k~~ia~~L~~aGv~~IEvG~fvspk~vPq~~D~~ev~~~l~~~~~~~l~~l~--~n~~gie~a~~aGv~~V~i 220 (359)
..++.++.++.++.+.+.|++.|-++....+.. + ..+..++++.+++.+++.+..-+ .+.+.++...++|++.+.+
T Consensus 68 ~~ls~eei~~~~~~~~~~g~~~i~l~gG~~~~~-~-~~~l~~l~~~i~~~~~l~i~~~~g~~~~e~l~~Lk~aG~~~v~~ 145 (323)
T PRK07094 68 YRLSPEEILECAKKAYELGYRTIVLQSGEDPYY-T-DEKIADIIKEIKKELDVAITLSLGERSYEEYKAWKEAGADRYLL 145 (323)
T ss_pred cCCCHHHHHHHHHHHHHCCCCEEEEecCCCCCC-C-HHHHHHHHHHHHccCCceEEEecCCCCHHHHHHHHHcCCCEEEe
Confidence 346899999999999999999998865332211 0 12233444444443455443222 2457788899999999987
Q ss_pred ecCCc--hHHHHhhhcCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHHCCcCEEEE--
Q 018252 221 FASAS--EAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISL-- 296 (359)
Q Consensus 221 ~~s~S--~~~~~~n~~~t~~e~l~~i~~~i~~Ak~~G~~V~~~is~~fg~~~~~r~~~e~l~~~a~~l~~~Gad~I~L-- 296 (359)
-+-.. +.+...+-+.+ .+...+.++.++++|+.+..+++ +|.|.+ +.+.+.+.++.+.+++++.+.+
T Consensus 146 glEs~~~~~~~~i~~~~s----~~~~~~~i~~l~~~Gi~v~~~~i--iGlpge---t~ed~~~~l~~l~~l~~~~v~~~~ 216 (323)
T PRK07094 146 RHETADKELYAKLHPGMS----FENRIACLKDLKELGYEVGSGFM--VGLPGQ---TLEDLADDILFLKELDLDMIGIGP 216 (323)
T ss_pred ccccCCHHHHHHhCCCCC----HHHHHHHHHHHHHcCCeecceEE--EECCCC---CHHHHHHHHHHHHhCCCCeeeeec
Confidence 55433 33333222233 45566788899999998877775 665543 6688888999999999886554
Q ss_pred ----cCC----CCCCcHHHHHHHHHHHHHhCCCceE----EEEeCCCCCcHHHHHHHHHHcCCCEEeceee
Q 018252 297 ----GDT----IGVGTPGTVVPMLEAVMAVVPVEKL----AVHLHDTYGQSLPNILISLQVSPMHAKPCFT 355 (359)
Q Consensus 297 ----~DT----~G~~~P~~v~~lv~~l~~~~p~~~L----~~H~HNd~GLAlANalaAv~AGa~~ID~tl~ 355 (359)
+.| .....+.++.++++..|..+|+..| ++-++...| ...++.+||+.+=++++
T Consensus 217 ~~P~pgTpl~~~~~~~~~~~~~~~a~~R~~lp~~~i~~~~~~~~~~~~~-----~~~~l~~Gan~~~~~~~ 282 (323)
T PRK07094 217 FIPHPDTPLKDEKGGSLELTLKVLALLRLLLPDANIPATTALGTLNPDG-----REKGLKAGANVVMPNLT 282 (323)
T ss_pred cccCCCCCcccCCCCCHHHHHHHHHHHHHhCcCCCCcccCCccccCchh-----HHHHHHcCCceecCCCC
Confidence 121 1234678888889988888887434 333332222 34899999998876664
No 50
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=98.12 E-value=0.00027 Score=67.68 Aligned_cols=175 Identities=16% Similarity=0.224 Sum_probs=110.5
Q ss_pred CHHHHHHHHHHHHhCCCCEEEEecc-CCCCC-cCCCC-----------CHHHHHHHhhhc----CCCeEEEEe-CCh---
Q 018252 146 PTGVKVELIRRLVSSGLPVVEATSF-VSPKW-VPQLA-----------DARDVMEAVRDL----EGARLPVLT-PNL--- 204 (359)
Q Consensus 146 ~~~~k~~ia~~L~~aGv~~IEvG~f-vspk~-vPq~~-----------D~~ev~~~l~~~----~~~~l~~l~-~n~--- 204 (359)
+.+.-+++++.|.+.|++.||+|.| ..|-+ .|... ..+.+++.++.+ .+..+..++ -|.
T Consensus 22 ~~~~~~~~~~~l~~~Gad~iElGiPfsDP~aDGpvIq~a~~~al~~G~~~~~~~~~v~~ir~~~~~~plv~m~Y~Npi~~ 101 (256)
T TIGR00262 22 TLETSLEIIKTLIEAGADALELGVPFSDPLADGPTIQAADLRALRAGMTPEKCFELLKKVRQKHPNIPIGLLTYYNLIFR 101 (256)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECCCCCCCCCcCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCEEEEEeccHHhh
Confidence 6788899999999999999999985 33321 01110 112344444432 344444443 343
Q ss_pred ----HhHHHHHHcCCCEEEEecCCchHHHHhhhcCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHH
Q 018252 205 ----KGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVA 280 (359)
Q Consensus 205 ----~gie~a~~aGv~~V~i~~s~S~~~~~~n~~~t~~e~l~~i~~~i~~Ak~~G~~V~~~is~~fg~~~~~r~~~e~l~ 280 (359)
+-++.+.++|++.+-+..- ..+...+.++.++++|+....-++ | .++++.+.
T Consensus 102 ~G~e~f~~~~~~aGvdgviipDl----------------p~ee~~~~~~~~~~~gl~~i~lv~-----P---~T~~eri~ 157 (256)
T TIGR00262 102 KGVEEFYAKCKEVGVDGVLVADL----------------PLEESGDLVEAAKKHGVKPIFLVA-----P---NADDERLK 157 (256)
T ss_pred hhHHHHHHHHHHcCCCEEEECCC----------------ChHHHHHHHHHHHHCCCcEEEEEC-----C---CCCHHHHH
Confidence 3366788899998877531 123456788899999998643222 2 24566666
Q ss_pred HHHHHHHHCC-cCEEEEcCCCCCC--cHHHHHHHHHHHHHhCCCceEEEEeCCCCCcH-HHHHHHHHHcCCCEEe
Q 018252 281 YVAKELHDMG-CFEISLGDTIGVG--TPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQS-LPNILISLQVSPMHAK 351 (359)
Q Consensus 281 ~~a~~l~~~G-ad~I~L~DT~G~~--~P~~v~~lv~~l~~~~p~~~L~~H~HNd~GLA-lANalaAv~AGa~~ID 351 (359)
.+++.. .| +..++.....|.- .+..+.++++.+++..+ .+|.+ ++|-. -.++..+.++||+.|=
T Consensus 158 ~i~~~~--~gfiy~vs~~G~TG~~~~~~~~~~~~i~~lr~~~~-~pi~v----gfGI~~~e~~~~~~~~GADgvV 225 (256)
T TIGR00262 158 QIAEKS--QGFVYLVSRAGVTGARNRAASALNELVKRLKAYSA-KPVLV----GFGISKPEQVKQAIDAGADGVI 225 (256)
T ss_pred HHHHhC--CCCEEEEECCCCCCCcccCChhHHHHHHHHHhhcC-CCEEE----eCCCCCHHHHHHHHHcCCCEEE
Confidence 666532 22 3445556777763 56779999999999754 35554 44554 5678888999999763
No 51
>TIGR00423 radical SAM domain protein, CofH subfamily. This protein family includes the CofH protein of coenzyme F(420) biosynthesis from Methanocaldococcus jannaschii, but appears to hit genomes more broadly than just the subset that make coenzyme F(420), so that narrower group is being built as a separate family.
Probab=98.10 E-value=0.00045 Score=67.55 Aligned_cols=195 Identities=11% Similarity=0.117 Sum_probs=126.8
Q ss_pred CCCCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcCCCCCH---HHHHHHhhh-cCCCeEEEEeC-------------ChH
Q 018252 143 NTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADA---RDVMEAVRD-LEGARLPVLTP-------------NLK 205 (359)
Q Consensus 143 ~~~~~~~k~~ia~~L~~aGv~~IEvG~fvspk~vPq~~D~---~ev~~~l~~-~~~~~l~~l~~-------------n~~ 205 (359)
..++.++.++.++...+.|++.|-+.+...|. .+. .++++.+++ .+++.+.++++ ..+
T Consensus 34 ~~ls~eeI~~~~~~~~~~G~~~i~l~gg~~~~-----~~~~~~~~i~~~Ik~~~~~i~~~~~s~~e~~~~~~~~g~~~~e 108 (309)
T TIGR00423 34 YVLSLEEILEKVKEAVAKGATEVCIQGGLNPQ-----LDIEYYEELFRAIKQEFPDVHIHAFSPMEVYFLAKNEGLSIEE 108 (309)
T ss_pred ccCCHHHHHHHHHHHHHCCCCEEEEecCCCCC-----CCHHHHHHHHHHHHHHCCCceEEecCHHHHHHHHHHcCCCHHH
Confidence 35899999999999999999998876533332 233 344555543 35677777764 124
Q ss_pred hHHHHHHcCCCEEE-Eec-CCchHHHHhhh--cCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHH
Q 018252 206 GFEAAIAAGAKEVA-IFA-SASEAFSKSNI--NCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAY 281 (359)
Q Consensus 206 gie~a~~aGv~~V~-i~~-s~S~~~~~~n~--~~t~~e~l~~i~~~i~~Ak~~G~~V~~~is~~fg~~~~~r~~~e~l~~ 281 (359)
.+++..++|++.+. .-. ..++-..+... +.+.+ +..++++.|+++|+++..+++ +|.+ -++++.++
T Consensus 109 ~l~~LkeAGl~~i~~~g~E~l~~~~~~~i~~~~~t~~----~~l~~i~~a~~~Gi~~~s~~i--iG~~----Et~ed~~~ 178 (309)
T TIGR00423 109 VLKRLKKAGLDSMPGTGAEILDDSVRRKICPNKLSSD----EWLEVIKTAHRLGIPTTATMM--FGHV----ENPEHRVE 178 (309)
T ss_pred HHHHHHHcCCCcCCCCcchhcCHHHHHhhCCCCCCHH----HHHHHHHHHHHcCCCceeeEE--ecCC----CCHHHHHH
Confidence 57888889999874 221 12222222111 22443 445888999999999877765 7754 27778888
Q ss_pred HHHHHHHCCcCEE------E----EcCCC-------CCCcHHHHHHHHHHHHHhCCCce-EEEEeCCCCCcHHHHHHHHH
Q 018252 282 VAKELHDMGCFEI------S----LGDTI-------GVGTPGTVVPMLEAVMAVVPVEK-LAVHLHDTYGQSLPNILISL 343 (359)
Q Consensus 282 ~a~~l~~~Gad~I------~----L~DT~-------G~~~P~~v~~lv~~l~~~~p~~~-L~~H~HNd~GLAlANalaAv 343 (359)
.+..+.+.+.+.. = -.+|- ...+|.+..++++..|=.+|.++ |..-. +.+|.-. +..|+
T Consensus 179 ~l~~lr~l~~~~~~f~~fiP~~f~~~~t~~l~~~~~~~~~~~e~lr~iA~~Rl~lp~~~~i~a~~-~~l~~~~--~~~~l 255 (309)
T TIGR00423 179 HLLRIRKIQEKTGGFTEFIPLPFQPENNPYLEGEVRKGASGIDDLKVIAISRILLNNIRNIQASW-VKLGLKL--AQVAL 255 (309)
T ss_pred HHHHHHhhchhhCCeeeEEeeeecCCCChhhccCCCCCCCHHHHHHHHHHHHHhcCCCccceecc-hhcCHHH--HHHHH
Confidence 8888887776521 1 12442 23678888888887777677533 44433 5555432 57899
Q ss_pred HcCCCEEeceee
Q 018252 344 QVSPMHAKPCFT 355 (359)
Q Consensus 344 ~AGa~~ID~tl~ 355 (359)
.+||+-+++|++
T Consensus 256 ~~Gand~~gt~~ 267 (309)
T TIGR00423 256 EFGANDLGGTLM 267 (309)
T ss_pred hCCCccCCcccc
Confidence 999999999875
No 52
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=98.03 E-value=0.00038 Score=66.99 Aligned_cols=175 Identities=13% Similarity=0.154 Sum_probs=111.3
Q ss_pred CHHHHHHHHHHHHhCCCCEEEEecc-CCCCC-cCCCC-----------CHHHHHHHhhhc---CCCeEEEEe-CCh---H
Q 018252 146 PTGVKVELIRRLVSSGLPVVEATSF-VSPKW-VPQLA-----------DARDVMEAVRDL---EGARLPVLT-PNL---K 205 (359)
Q Consensus 146 ~~~~k~~ia~~L~~aGv~~IEvG~f-vspk~-vPq~~-----------D~~ev~~~l~~~---~~~~l~~l~-~n~---~ 205 (359)
+.+.-.++++.|.+.|++.||+|+| ..|.+ .|... ..+.+++.+++. .++.+..++ -|. .
T Consensus 27 ~~~~~~~~~~~l~~~Gad~iElGiPfSDP~aDGpvIq~a~~rAL~~g~~~~~~~~~~~~~r~~~~~p~vlm~Y~N~i~~~ 106 (263)
T CHL00200 27 DIVITKKALKILDKKGADIIELGIPYSDPLADGPIIQEASNRALKQGINLNKILSILSEVNGEIKAPIVIFTYYNPVLHY 106 (263)
T ss_pred CHHHHHHHHHHHHHCCCCEEEECCCCCCCCccCHHHHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCCEEEEecccHHHHh
Confidence 6788999999999999999999985 44421 11110 112344444432 344444443 243 2
Q ss_pred h----HHHHHHcCCCEEEEecCCchHHHHhhhcCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHH
Q 018252 206 G----FEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAY 281 (359)
Q Consensus 206 g----ie~a~~aGv~~V~i~~s~S~~~~~~n~~~t~~e~l~~i~~~i~~Ak~~G~~V~~~is~~fg~~~~~r~~~e~l~~ 281 (359)
| ++.+.++|++.+-+..= -++...+..+.++++|+....-++ | .++++.+..
T Consensus 107 G~e~F~~~~~~aGvdgviipDL----------------P~ee~~~~~~~~~~~gi~~I~lv~-----P---tT~~eri~~ 162 (263)
T CHL00200 107 GINKFIKKISQAGVKGLIIPDL----------------PYEESDYLISVCNLYNIELILLIA-----P---TSSKSRIQK 162 (263)
T ss_pred CHHHHHHHHHHcCCeEEEecCC----------------CHHHHHHHHHHHHHcCCCEEEEEC-----C---CCCHHHHHH
Confidence 4 56777899999887431 124456888899999998754332 2 235555555
Q ss_pred HHHHHHHCCcCEEEEcCCCCC--CcHHHHHHHHHHHHHhCCCceEEEEeCCCCCcH-HHHHHHHHHcCCCEE
Q 018252 282 VAKELHDMGCFEISLGDTIGV--GTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQS-LPNILISLQVSPMHA 350 (359)
Q Consensus 282 ~a~~l~~~Gad~I~L~DT~G~--~~P~~v~~lv~~l~~~~p~~~L~~H~HNd~GLA-lANalaAv~AGa~~I 350 (359)
+++... -=++-++..=+.|. ..|..+.++++.+|+... .||.+ ++|-. -.++....++|||.|
T Consensus 163 i~~~a~-gFIY~vS~~GvTG~~~~~~~~~~~~i~~ir~~t~-~Pi~v----GFGI~~~e~~~~~~~~GADGv 228 (263)
T CHL00200 163 IARAAP-GCIYLVSTTGVTGLKTELDKKLKKLIETIKKMTN-KPIIL----GFGISTSEQIKQIKGWNINGI 228 (263)
T ss_pred HHHhCC-CcEEEEcCCCCCCCCccccHHHHHHHHHHHHhcC-CCEEE----ECCcCCHHHHHHHHhcCCCEE
Confidence 555331 11344555777777 557889999999999653 57776 56766 446667788999865
No 53
>PLN02389 biotin synthase
Probab=97.96 E-value=0.0022 Score=64.77 Aligned_cols=191 Identities=12% Similarity=0.056 Sum_probs=123.6
Q ss_pred CCCHHHHHHHHHHHHhCCCCEEEEec-c---CCCCCcCCCCCHHHHHHHhhhcC--CCeEEEEe--CChHhHHHHHHcCC
Q 018252 144 TVPTGVKVELIRRLVSSGLPVVEATS-F---VSPKWVPQLADARDVMEAVRDLE--GARLPVLT--PNLKGFEAAIAAGA 215 (359)
Q Consensus 144 ~~~~~~k~~ia~~L~~aGv~~IEvG~-f---vspk~vPq~~D~~ev~~~l~~~~--~~~l~~l~--~n~~gie~a~~aGv 215 (359)
.+++++.++.++.+.+.|++.|-++. + ..++ .+.+.+.+.++.++ +..+.+-. .+.+.+++..++|+
T Consensus 115 ~Ls~EeIl~~a~~~~~~G~~~~~ivts~rg~~~e~-----~~~e~i~eiir~ik~~~l~i~~s~G~l~~E~l~~LkeAGl 189 (379)
T PLN02389 115 LMSKDDVLEAAKRAKEAGSTRFCMGAAWRDTVGRK-----TNFNQILEYVKEIRGMGMEVCCTLGMLEKEQAAQLKEAGL 189 (379)
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEEEecccCCCCCh-----hHHHHHHHHHHHHhcCCcEEEECCCCCCHHHHHHHHHcCC
Confidence 58999999999999999999987752 1 1111 13455666666443 33332111 24578888899999
Q ss_pred CEEEEecCCch-HHHHhhhcCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHHC--CcC
Q 018252 216 KEVAIFASASE-AFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDM--GCF 292 (359)
Q Consensus 216 ~~V~i~~s~S~-~~~~~n~~~t~~e~l~~i~~~i~~Ak~~G~~V~~~is~~fg~~~~~r~~~e~l~~~a~~l~~~--Gad 292 (359)
+.+.+-+.+++ .|.+..-+.+ .+...+.++.|++.|+++...+. +|. . -++++.++.+..+.+. .++
T Consensus 190 d~~~~~LeTs~~~y~~i~~~~s----~e~rl~ti~~a~~~Gi~v~sg~I--iGl-g---Et~edrv~~l~~Lr~L~~~~~ 259 (379)
T PLN02389 190 TAYNHNLDTSREYYPNVITTRS----YDDRLETLEAVREAGISVCSGGI--IGL-G---EAEEDRVGLLHTLATLPEHPE 259 (379)
T ss_pred CEEEeeecCChHHhCCcCCCCC----HHHHHHHHHHHHHcCCeEeEEEE--ECC-C---CCHHHHHHHHHHHHhcccCCc
Confidence 99988776666 3332222233 45566788889999999876654 665 2 2667777777777777 466
Q ss_pred EEEE------cCC----CCCCcHHHHHHHHHHHHHhCCCceEEEEeCCCCCcHHHHHHHHHHcCCCEE
Q 018252 293 EISL------GDT----IGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQVSPMHA 350 (359)
Q Consensus 293 ~I~L------~DT----~G~~~P~~v~~lv~~l~~~~p~~~L~~H~HNd~GLAlANalaAv~AGa~~I 350 (359)
.|.| +.| ....+|.++.+++...|-.+|+..+.+=.-- .-++-.....|+.+||+-+
T Consensus 260 ~v~l~~l~P~~GTpL~~~~~~s~~e~lr~iAi~Rl~lP~~~i~i~~gr-~~l~~~~~~~~l~~GAN~~ 326 (379)
T PLN02389 260 SVPINALVAVKGTPLEDQKPVEIWEMVRMIATARIVMPKAMVRLSAGR-VRFSMAEQALCFLAGANSI 326 (379)
T ss_pred EEecccceecCCCcCCCCCCCCHHHHHHHHHHHHHHCCCccccccccc-cccChhHHHHHHHhCCCEE
Confidence 5553 255 2347788999999988888886433221111 1123334678999999865
No 54
>TIGR03551 F420_cofH 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofH subunit. This enzyme, together with CofG, complete the biosynthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, the chromophore of coenzyme F420. The chromophore is also used in cyanobacteria DNA photolyases.
Probab=97.95 E-value=0.00069 Score=67.22 Aligned_cols=193 Identities=15% Similarity=0.144 Sum_probs=125.9
Q ss_pred CCCCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcCCCCCH---HHHHHHhhh-cCCCeEEEEeC-------------ChH
Q 018252 143 NTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADA---RDVMEAVRD-LEGARLPVLTP-------------NLK 205 (359)
Q Consensus 143 ~~~~~~~k~~ia~~L~~aGv~~IEvG~fvspk~vPq~~D~---~ev~~~l~~-~~~~~l~~l~~-------------n~~ 205 (359)
..++.++.++.++.+.+.|++.|-+.....|. .+. .++.+.+++ .++..+.++++ ..+
T Consensus 68 y~ls~eeI~e~~~~~~~~G~~~i~l~gG~~p~-----~~~~~~~~i~~~Ik~~~~~i~~~~~t~~ei~~~~~~~g~~~~e 142 (343)
T TIGR03551 68 YLLSLEEIAERAAEAWKAGATEVCIQGGIHPD-----LDGDFYLDILRAVKEEVPGMHIHAFSPMEVYYGARNSGLSVEE 142 (343)
T ss_pred ccCCHHHHHHHHHHHHHCCCCEEEEEeCCCCC-----CCHHHHHHHHHHHHHHCCCceEEecCHHHHHHHHHHcCCCHHH
Confidence 45899999999999999999998776433332 133 344555554 36677766432 234
Q ss_pred hHHHHHHcCCCEEEEecCCchHHHHh---hhc--C-CHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHH
Q 018252 206 GFEAAIAAGAKEVAIFASASEAFSKS---NIN--C-SIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKV 279 (359)
Q Consensus 206 gie~a~~aGv~~V~i~~s~S~~~~~~---n~~--~-t~~e~l~~i~~~i~~Ak~~G~~V~~~is~~fg~~~~~r~~~e~l 279 (359)
.+++..++|++.+.. ...+.+... ++. + +.+ ...+.++.|+++|+++...+. +|.+ + +.++.
T Consensus 143 ~l~~LkeAGl~~i~~--~~~E~~~~~v~~~i~~~~~~~~----~~~~~i~~a~~~Gi~v~s~~i--~G~~-E---t~ed~ 210 (343)
T TIGR03551 143 ALKRLKEAGLDSMPG--TAAEILDDEVRKVICPDKLSTA----EWIEIIKTAHKLGIPTTATIM--YGHV-E---TPEHW 210 (343)
T ss_pred HHHHHHHhCcccccC--cchhhcCHHHHHhcCCCCCCHH----HHHHHHHHHHHcCCcccceEE--EecC-C---CHHHH
Confidence 578888899998762 222344321 122 1 343 446889999999999877665 6643 2 55777
Q ss_pred HHHHHHHHHCCcCE------EEEc----CCC--------CCCcHHHHHHHHHHHHHhCCCc--eEEEEeCCCCCcHHHHH
Q 018252 280 AYVAKELHDMGCFE------ISLG----DTI--------GVGTPGTVVPMLEAVMAVVPVE--KLAVHLHDTYGQSLPNI 339 (359)
Q Consensus 280 ~~~a~~l~~~Gad~------I~L~----DT~--------G~~~P~~v~~lv~~l~~~~p~~--~L~~H~HNd~GLAlANa 339 (359)
++.+..+.+++++. |-+. .|- ...+|.+..++++..|=.+|+. .|..-. .++|.. -.
T Consensus 211 ~~~l~~lr~l~~~~~~~~~~iP~~f~~~gT~l~~~~~~~~~~~~~~~lr~iAv~Rl~lp~~~~~i~a~~-~~l~~~--~~ 287 (343)
T TIGR03551 211 VDHLLILREIQEETGGFTEFVPLPFVHYNAPLYLKGMARPGPTGREDLKVHAIARILLHGLIDNIQASW-VKLGKK--LA 287 (343)
T ss_pred HHHHHHHHHhhHHhCCeeEEEeccccCCCCccccccCCCCCCCHHHHHHHHHHHHHhCCCcccCeeccc-cccCHH--HH
Confidence 77777777766542 2222 332 2357888999998888777863 444444 345543 34
Q ss_pred HHHHHcCCCEEeceee
Q 018252 340 LISLQVSPMHAKPCFT 355 (359)
Q Consensus 340 laAv~AGa~~ID~tl~ 355 (359)
..++.+||+-+++|++
T Consensus 288 ~~~l~~Gan~~~g~~~ 303 (343)
T TIGR03551 288 QVALRCGANDLGGTLM 303 (343)
T ss_pred HHHHhCCCccCCccce
Confidence 8899999999999875
No 55
>PLN02591 tryptophan synthase
Probab=97.93 E-value=0.0014 Score=62.71 Aligned_cols=175 Identities=18% Similarity=0.220 Sum_probs=109.0
Q ss_pred CHHHHHHHHHHHHhCCCCEEEEecc-CCCCC-cCCCC-----------CHHHHHHHhhhc---CCCeEEEEe-CCh---H
Q 018252 146 PTGVKVELIRRLVSSGLPVVEATSF-VSPKW-VPQLA-----------DARDVMEAVRDL---EGARLPVLT-PNL---K 205 (359)
Q Consensus 146 ~~~~k~~ia~~L~~aGv~~IEvG~f-vspk~-vPq~~-----------D~~ev~~~l~~~---~~~~l~~l~-~n~---~ 205 (359)
+.+.-+++++.|.+.|++.||+|+| ..|-+ .|... ..+.+++.+++. .++.+..++ -|. .
T Consensus 14 ~~e~~~~~~~~l~~~Gad~iElGiPfSDP~aDGpvIq~a~~rAL~~G~~~~~~~~~~~~~r~~~~~p~ilm~Y~N~i~~~ 93 (250)
T PLN02591 14 DLDTTAEALRLLDACGADVIELGVPYSDPLADGPVIQAAATRALEKGTTLDSVISMLKEVAPQLSCPIVLFTYYNPILKR 93 (250)
T ss_pred CHHHHHHHHHHHHHCCCCEEEECCCCCCCcccCHHHHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCCEEEEecccHHHHh
Confidence 5788899999999999999999985 44421 11110 112445555432 234444444 243 2
Q ss_pred h----HHHHHHcCCCEEEEecCCchHHHHhhhcCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHH
Q 018252 206 G----FEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAY 281 (359)
Q Consensus 206 g----ie~a~~aGv~~V~i~~s~S~~~~~~n~~~t~~e~l~~i~~~i~~Ak~~G~~V~~~is~~fg~~~~~r~~~e~l~~ 281 (359)
| ++.+.++|++-+-+.. .. +++..++.++++++|+.....++ | .++++.+..
T Consensus 94 G~~~F~~~~~~aGv~GviipD------------LP----~ee~~~~~~~~~~~gl~~I~lv~-----P---tt~~~ri~~ 149 (250)
T PLN02591 94 GIDKFMATIKEAGVHGLVVPD------------LP----LEETEALRAEAAKNGIELVLLTT-----P---TTPTERMKA 149 (250)
T ss_pred HHHHHHHHHHHcCCCEEEeCC------------CC----HHHHHHHHHHHHHcCCeEEEEeC-----C---CCCHHHHHH
Confidence 4 5567789999887742 11 24566888999999998754332 1 234555555
Q ss_pred HHHHHHHCC-cCEEEEcCCCCC--CcHHHHHHHHHHHHHhCCCceEEEEeCCCCCcH-HHHHHHHHHcCCCEEe
Q 018252 282 VAKELHDMG-CFEISLGDTIGV--GTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQS-LPNILISLQVSPMHAK 351 (359)
Q Consensus 282 ~a~~l~~~G-ad~I~L~DT~G~--~~P~~v~~lv~~l~~~~p~~~L~~H~HNd~GLA-lANalaAv~AGa~~ID 351 (359)
+++.. -| ++-|+..-+.|. ..|..+.++++.+|+. .++++.+ .+|-. -.++-...+.|||-|=
T Consensus 150 ia~~~--~gFIY~Vs~~GvTG~~~~~~~~~~~~i~~vk~~-~~~Pv~v----GFGI~~~e~v~~~~~~GADGvI 216 (250)
T PLN02591 150 IAEAS--EGFVYLVSSTGVTGARASVSGRVESLLQELKEV-TDKPVAV----GFGISKPEHAKQIAGWGADGVI 216 (250)
T ss_pred HHHhC--CCcEEEeeCCCCcCCCcCCchhHHHHHHHHHhc-CCCceEE----eCCCCCHHHHHHHHhcCCCEEE
Confidence 55541 12 345555666776 5589999999999995 4455554 33444 3467777888888753
No 56
>PRK06256 biotin synthase; Validated
Probab=97.90 E-value=0.0028 Score=62.47 Aligned_cols=174 Identities=13% Similarity=0.047 Sum_probs=114.7
Q ss_pred CCCHHHHHHHHHHHHhCCCCEEEEec-cCCCCCcCCCCCHHHHHHHhh---hcCCCeEEEEeC--ChHhHHHHHHcCCCE
Q 018252 144 TVPTGVKVELIRRLVSSGLPVVEATS-FVSPKWVPQLADARDVMEAVR---DLEGARLPVLTP--NLKGFEAAIAAGAKE 217 (359)
Q Consensus 144 ~~~~~~k~~ia~~L~~aGv~~IEvG~-fvspk~vPq~~D~~ev~~~l~---~~~~~~l~~l~~--n~~gie~a~~aGv~~ 217 (359)
.+++++.++.++.+.+.|+..+-+-. ...| ...+.+.+.+.++ +..+..+.+-.. +.+.++...++|++.
T Consensus 90 ~~s~eeI~~~~~~~~~~g~~~~~l~~~g~~p----~~~~~~~~~e~i~~i~~~~~i~~~~~~g~l~~e~l~~LkeaG~~~ 165 (336)
T PRK06256 90 WLDIEELIEAAKEAIEEGAGTFCIVASGRGP----SGKEVDQVVEAVKAIKEETDLEICACLGLLTEEQAERLKEAGVDR 165 (336)
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEEEecCCCC----CchHHHHHHHHHHHHHhcCCCcEEecCCcCCHHHHHHHHHhCCCE
Confidence 47899999999999999997665422 2222 1122233444443 334444433222 457788888999999
Q ss_pred EEEecCCchHHHHhhhcCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHHCCcCEEEE-
Q 018252 218 VAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISL- 296 (359)
Q Consensus 218 V~i~~s~S~~~~~~n~~~t~~e~l~~i~~~i~~Ak~~G~~V~~~is~~fg~~~~~r~~~e~l~~~a~~l~~~Gad~I~L- 296 (359)
+.+.+-+++.+.. +++.+ ...+...++++.++++|+++...+. +|. .-+.+.+.+.++.+.+.+++.|.+
T Consensus 166 v~~~lEts~~~~~-~i~~~--~t~~~~i~~i~~a~~~Gi~v~~~~I--~Gl----gEt~ed~~~~~~~l~~l~~~~v~i~ 236 (336)
T PRK06256 166 YNHNLETSRSYFP-NVVTT--HTYEDRIDTCEMVKAAGIEPCSGGI--IGM----GESLEDRVEHAFFLKELDADSIPIN 236 (336)
T ss_pred EecCCccCHHHHh-hcCCC--CCHHHHHHHHHHHHHcCCeeccCeE--EeC----CCCHHHHHHHHHHHHhCCCCEEeec
Confidence 8885544554322 33322 1245556788889999998866654 553 236788889999999999987665
Q ss_pred -----cCC----CCCCcHHHHHHHHHHHHHhCCCceEEEEeCC
Q 018252 297 -----GDT----IGVGTPGTVVPMLEAVMAVVPVEKLAVHLHD 330 (359)
Q Consensus 297 -----~DT----~G~~~P~~v~~lv~~l~~~~p~~~L~~H~HN 330 (359)
+.| ....+|.++.+++..+|-.+|+..|-+=++-
T Consensus 237 ~l~P~pGT~l~~~~~~~~~e~l~~ia~~Rl~~p~~~I~~~~gr 279 (336)
T PRK06256 237 FLNPIPGTPLENHPELTPLECLKTIAIFRLINPDKEIRIAGGR 279 (336)
T ss_pred ccccCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCeeEecCch
Confidence 343 2346789999999988888898777665443
No 57
>PRK09196 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=97.88 E-value=0.0013 Score=65.63 Aligned_cols=212 Identities=15% Similarity=0.121 Sum_probs=138.3
Q ss_pred cccCCCCC--CCCCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcCCCCCHHHHHHHhhh-cCCCeEEEEeC---ChHhHH
Q 018252 135 RDGLQNEK--NTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRD-LEGARLPVLTP---NLKGFE 208 (359)
Q Consensus 135 RDG~Q~~~--~~~~~~~k~~ia~~L~~aGv~~IEvG~fvspk~vPq~~D~~ev~~~l~~-~~~~~l~~l~~---n~~gie 208 (359)
|.+.+..+ +.+..+....++++-.+.+-..|=-.+...-+..+ +.....+...+.+ .+.+.+..... +.+.+.
T Consensus 14 ~~~~yAVgAfN~~n~e~~~avi~AAee~~sPvIiq~s~~~~~~~g-~~~~~~~~~~~a~~~~~VPValHLDHg~~~e~i~ 92 (347)
T PRK09196 14 AEHGYGVPAFNVNNLEQVQAIMEAADETDSPVILQASAGARKYAG-EPFLRHLILAAVEEYPHIPVVMHQDHGNSPATCQ 92 (347)
T ss_pred HHcCceEEEeeeCCHHHHHHHHHHHHHhCCCEEEECCccHhhhCC-HHHHHHHHHHHHHhCCCCcEEEECCCCCCHHHHH
Confidence 34455553 55778999999999999999997443322212111 1111122222222 22355555554 457788
Q ss_pred HHHHcCCCEEEEecCCchHHHHhhhcCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCC-------CC----------
Q 018252 209 AAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCP-------VE---------- 271 (359)
Q Consensus 209 ~a~~aGv~~V~i~~s~S~~~~~~n~~~t~~e~l~~i~~~i~~Ak~~G~~V~~~is~~fg~~-------~~---------- 271 (359)
+++++|...|.+=.| ..+ ..|+....+|+++.-++++++|+..|+.|.+-|-..=+.+ +.
T Consensus 93 ~ai~~GftSVMiDgS--~l~-~~~~~~p~eENI~~Tkevve~Ah~~Gv~VEaELG~vgg~e~~~~g~~~~~~~~~~~~~~ 169 (347)
T PRK09196 93 RAIQLGFTSVMMDGS--LKA-DGKTPASYEYNVDVTRKVVEMAHACGVSVEGELGCLGSLETGMGGEEDGHGAEGKLSHD 169 (347)
T ss_pred HHHHcCCCEEEecCC--CCc-ccCCCCCHHHHHHHHHHHHHHHHHcCCeEEEEEeeccCccccccccccCcccccccchh
Confidence 999999998887433 222 1344457899999999999999999999998887542222 11
Q ss_pred -CCCCHHHHHHHHHHHHHCCcCEE--EEcCCCCCC----cHH---HHHHHHHHHHHhCCCceEEEEeCCCC---------
Q 018252 272 -GAIPPSKVAYVAKELHDMGCFEI--SLGDTIGVG----TPG---TVVPMLEAVMAVVPVEKLAVHLHDTY--------- 332 (359)
Q Consensus 272 -~r~~~e~l~~~a~~l~~~Gad~I--~L~DT~G~~----~P~---~v~~lv~~l~~~~p~~~L~~H~HNd~--------- 332 (359)
.-++|+...++++ +.|+|.+ .+.-.=|.- .|. -=.++++.|++.+|++||.+|+=...
T Consensus 170 ~~~T~PeeA~~Fv~---~TgvD~LAvaiGT~HG~Yk~~~~p~~~~LdfdrL~eI~~~v~~vPLVLHGgSG~~~~~~~~~~ 246 (347)
T PRK09196 170 QLLTDPEEAADFVK---KTQVDALAIAIGTSHGAYKFTRKPTGDVLAIDRIKEIHARLPNTHLVMHGSSSVPQELLDIIN 246 (347)
T ss_pred hcCCCHHHHHHHHH---HhCcCeEhhhhccccCCCCCCCCCChhhccHHHHHHHHhcCCCCCEEEeCCCCCCHHHHHHHH
Confidence 1467877666665 4578843 333344443 242 22346788888887789999987755
Q ss_pred ----------CcHHHHHHHHHHcCCCEEece
Q 018252 333 ----------GQSLPNILISLQVSPMHAKPC 353 (359)
Q Consensus 333 ----------GLAlANalaAv~AGa~~ID~t 353 (359)
|........|++.|+.-|+..
T Consensus 247 ~~g~~~~~~~G~~~e~i~~ai~~GI~KINi~ 277 (347)
T PRK09196 247 EYGGDMPETYGVPVEEIQEGIKHGVRKVNID 277 (347)
T ss_pred HhcCCccccCCCCHHHHHHHHHCCCceEEeC
Confidence 778899999999999998764
No 58
>TIGR03699 mena_SCO4550 menaquinone biosynthesis protein, SCO4550 family. members of this protein family are involved in menaquinone biosynthesis by an alternate pathway via futalosine.
Probab=97.85 E-value=0.0018 Score=64.07 Aligned_cols=197 Identities=15% Similarity=0.111 Sum_probs=123.5
Q ss_pred CCCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcCCCCCHHHHHHHhhh-cCCCeEEEEeCC-------------hHhHHH
Q 018252 144 TVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRD-LEGARLPVLTPN-------------LKGFEA 209 (359)
Q Consensus 144 ~~~~~~k~~ia~~L~~aGv~~IEvG~fvspk~vPq~~D~~ev~~~l~~-~~~~~l~~l~~n-------------~~gie~ 209 (359)
.++.++.++.++.+.+.|++.|-+.....|.. + .....++.+.+++ .+++.+.++++. .+.++.
T Consensus 71 ~ls~eei~~~~~~~~~~G~~~i~l~gG~~p~~-~-~~~~~~li~~Ik~~~~~i~~~~~s~~ei~~~~~~~g~~~~e~l~~ 148 (340)
T TIGR03699 71 VLSVEEILQKIEELVAYGGTQILLQGGVNPDL-G-LDYYEDLFRAIKARFPHIHIHSFSPVEIVYIAKKEGLSLREVLER 148 (340)
T ss_pred CCCHHHHHHHHHHHHHcCCcEEEEecCCCCCC-C-HHHHHHHHHHHHHHCCCcCCCCCCHHHHHHHhccCCCCHHHHHHH
Confidence 58999999999999999999998865434321 1 0112334555543 345554333321 355677
Q ss_pred HHHcCCCEEEEe--cCCchHHHHhhh--cCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHH
Q 018252 210 AIAAGAKEVAIF--ASASEAFSKSNI--NCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKE 285 (359)
Q Consensus 210 a~~aGv~~V~i~--~s~S~~~~~~n~--~~t~~e~l~~i~~~i~~Ak~~G~~V~~~is~~fg~~~~~r~~~e~l~~~a~~ 285 (359)
..++|++.+... -..++-..+.-. ..+.++ ..++++.|+++|+++..++. +|. .-+++..++.++.
T Consensus 149 Lk~aG~~~~~~~g~E~~~~~~~~~~~~~~~s~~~----~l~~i~~a~~~Gi~v~~~~i--iGl----gEt~ed~~~~l~~ 218 (340)
T TIGR03699 149 LKEAGLDSIPGGGAEILSDRVRKIISPKKISSEE----WLEVMETAHKLGLPTTATMM--FGH----VETLEDRIEHLER 218 (340)
T ss_pred HHHcCCCcCCCCcccccCHHHHHhhCCCCCCHHH----HHHHHHHHHHcCCCccceeE--eeC----CCCHHHHHHHHHH
Confidence 888999987521 112232222211 234444 46888899999999876665 652 2366778888888
Q ss_pred HHHCCcCE------EEE----cCCC----CCCcHHHHHHHHHHHHHhCCCc-eEEEEeCCCCCcHHHHHHHHHHcCCCEE
Q 018252 286 LHDMGCFE------ISL----GDTI----GVGTPGTVVPMLEAVMAVVPVE-KLAVHLHDTYGQSLPNILISLQVSPMHA 350 (359)
Q Consensus 286 l~~~Gad~------I~L----~DT~----G~~~P~~v~~lv~~l~~~~p~~-~L~~H~HNd~GLAlANalaAv~AGa~~I 350 (359)
+.+.+++. |-+ .+|- ...+|.+..++++..|-.+|++ .|..-. ..+ +......|+.+||+-+
T Consensus 219 l~~l~~~~~~~~~fIP~~f~p~~tpl~~~~~~~~~e~l~~iA~~Rl~lp~~~~i~~~~-~~~--g~~~~~~~l~~Gan~~ 295 (340)
T TIGR03699 219 IRELQDKTGGFTAFIPWTFQPGNTELGKKRPATSTEYLKVLAISRIFLDNIPNIQASW-VTQ--GKEVGQLALHFGANDF 295 (340)
T ss_pred HHHhchhhCCeeEEEeecccCCCCcccCCCCCCHHHHHHHHHHHHHcCCCCCcccCCc-ccc--ChHHHHHHHhcCCccC
Confidence 88887764 222 2332 2467889999998888878863 133322 223 3345678999999999
Q ss_pred eceee
Q 018252 351 KPCFT 355 (359)
Q Consensus 351 D~tl~ 355 (359)
+++++
T Consensus 296 ~g~~~ 300 (340)
T TIGR03699 296 GSTML 300 (340)
T ss_pred CCccc
Confidence 98876
No 59
>PRK07315 fructose-bisphosphate aldolase; Provisional
Probab=97.78 E-value=0.0051 Score=60.18 Aligned_cols=196 Identities=17% Similarity=0.172 Sum_probs=131.4
Q ss_pred CCCCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcCCCCCHHHHHHHhhhcC--CCeEEEEeC--ChHhHHHHHHcCCCEE
Q 018252 143 NTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLE--GARLPVLTP--NLKGFEAAIAAGAKEV 218 (359)
Q Consensus 143 ~~~~~~~k~~ia~~L~~aGv~~IEvG~fvspk~vPq~~D~~ev~~~l~~~~--~~~l~~l~~--n~~gie~a~~aGv~~V 218 (359)
+....+.-..++++-.+.+-+.|=-.+...-++.+.+.....+...+.+.. .+.+..... +.+.+++|++.|++.|
T Consensus 24 N~~n~e~~~avi~aAe~~~sPvIlq~s~~~~~~~~~~~~~~~~~~~~a~~~~~~vPV~lHLDH~~~~~i~~ai~~GftSV 103 (293)
T PRK07315 24 NTNNLEWTQAILRAAEAKKAPVLIQTSMGAAKYMGGYKVCKNLIENLVESMGITVPVAIHLDHGHYEDALECIEVGYTSI 103 (293)
T ss_pred EECCHHHHHHHHHHHHHHCCCEEEEcCccHHhhcCcHHHHHHHHHHHHHHcCCCCcEEEECCCCCHHHHHHHHHcCCCEE
Confidence 456788899999999999999984443221111111111112222222222 344555444 3467889999999999
Q ss_pred EEecCCchHHHHhhhcCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCC----CC-CCHHHHHHHHHHHHHCCcCE
Q 018252 219 AIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVE----GA-IPPSKVAYVAKELHDMGCFE 293 (359)
Q Consensus 219 ~i~~s~S~~~~~~n~~~t~~e~l~~i~~~i~~Ak~~G~~V~~~is~~fg~~~~----~r-~~~e~l~~~a~~l~~~Gad~ 293 (359)
.+=.+ ..+.+|.++..++++++|+..|+.+.+.+-...|.++. +. ++|+++.+++ +.|+|.
T Consensus 104 m~d~S----------~l~~eEni~~t~~v~~~a~~~gv~vE~ElG~i~g~ed~~~g~s~~t~peea~~f~----~tgvD~ 169 (293)
T PRK07315 104 MFDGS----------HLPVEENLKLAKEVVEKAHAKGISVEAEVGTIGGEEDGIIGKGELAPIEDAKAMV----ETGIDF 169 (293)
T ss_pred EEcCC----------CCCHHHHHHHHHHHHHHHHHcCCEEEEecCcccCcCccccCccCCCCHHHHHHHH----HcCCCE
Confidence 88543 23568899999999999999999998877755443442 23 7888766655 479998
Q ss_pred EEEc--CCCCCC---cHHHHHHHHHHHHHhCCCceEEEEeCCCCCcHHHHHHHHHHcCCCEEecee
Q 018252 294 ISLG--DTIGVG---TPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQVSPMHAKPCF 354 (359)
Q Consensus 294 I~L~--DT~G~~---~P~~v~~lv~~l~~~~p~~~L~~H~HNd~GLAlANalaAv~AGa~~ID~tl 354 (359)
|.++ =.=|.- +|.-=-++++.+++..+++||.+|+-. |....|...++++|++-|...-
T Consensus 170 LAv~iG~vHG~y~t~~k~l~~e~L~~i~~~~~~iPlVlhGGS--Gi~~e~~~~~i~~Gi~KiNv~T 233 (293)
T PRK07315 170 LAAGIGNIHGPYPENWEGLDLDHLEKLTEAVPGFPIVLHGGS--GIPDDQIQEAIKLGVAKVNVNT 233 (293)
T ss_pred EeeccccccccCCCCCCcCCHHHHHHHHHhccCCCEEEECCC--CCCHHHHHHHHHcCCCEEEEcc
Confidence 7766 332222 343334678888888866899888854 7888999999999999987653
No 60
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=97.78 E-value=0.0013 Score=60.00 Aligned_cols=167 Identities=18% Similarity=0.196 Sum_probs=103.0
Q ss_pred CCCHHHHHHHHHHHHhCCCCEEEEecc-CCCCCcCCCCCHHHHHHHhhhc-CCCeEEEEe--CCh--HhHHHHHHcCCCE
Q 018252 144 TVPTGVKVELIRRLVSSGLPVVEATSF-VSPKWVPQLADARDVMEAVRDL-EGARLPVLT--PNL--KGFEAAIAAGAKE 217 (359)
Q Consensus 144 ~~~~~~k~~ia~~L~~aGv~~IEvG~f-vspk~vPq~~D~~ev~~~l~~~-~~~~l~~l~--~n~--~gie~a~~aGv~~ 217 (359)
..+.++-+++++.| +-|++.||+|.. ..+ ..-++++.+++. ++..+.+=+ -+. ..++.+.++|++.
T Consensus 8 ~~~~~~a~~~~~~l-~~~v~~iev~~~l~~~-------~g~~~i~~l~~~~~~~~i~~d~k~~d~~~~~~~~~~~~Gad~ 79 (206)
T TIGR03128 8 LLDIEEALELAEKV-ADYVDIIEIGTPLIKN-------EGIEAVKEMKEAFPDRKVLADLKTMDAGEYEAEQAFAAGADI 79 (206)
T ss_pred CCCHHHHHHHHHHc-ccCeeEEEeCCHHHHH-------hCHHHHHHHHHHCCCCEEEEEEeeccchHHHHHHHHHcCCCE
Confidence 36788999999999 899999999942 211 112344555443 444443221 132 3689999999998
Q ss_pred EEEecCCchHHHHhhhcCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHHCCcCEEEEc
Q 018252 218 VAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLG 297 (359)
Q Consensus 218 V~i~~s~S~~~~~~n~~~t~~e~l~~i~~~i~~Ak~~G~~V~~~is~~fg~~~~~r~~~e~l~~~a~~l~~~Gad~I~L~ 297 (359)
|.+..-... ..+.+++++++++|+++...+. . ..+ ..+.++.+.+.|+|.|.+.
T Consensus 80 i~vh~~~~~---------------~~~~~~i~~~~~~g~~~~~~~~----~----~~t---~~~~~~~~~~~g~d~v~~~ 133 (206)
T TIGR03128 80 VTVLGVADD---------------ATIKGAVKAAKKHGKEVQVDLI----N----VKD---KVKRAKELKELGADYIGVH 133 (206)
T ss_pred EEEeccCCH---------------HHHHHHHHHHHHcCCEEEEEec----C----CCC---hHHHHHHHHHcCCCEEEEc
Confidence 776433211 1245778889999998865432 1 112 3344555677899988774
Q ss_pred -----CCCCCCcHHHHHHHHHHHHHhCCCceEEEEeCCCCCcHHHHHHHHHHcCCCEEec
Q 018252 298 -----DTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQVSPMHAKP 352 (359)
Q Consensus 298 -----DT~G~~~P~~v~~lv~~l~~~~p~~~L~~H~HNd~GLAlANalaAv~AGa~~ID~ 352 (359)
++.+...+ +.++.+++.++..++.+= =|-..-|.-..+++||+.|-+
T Consensus 134 pg~~~~~~~~~~~----~~i~~l~~~~~~~~i~v~----GGI~~~n~~~~~~~Ga~~v~v 185 (206)
T TIGR03128 134 TGLDEQAKGQNPF----EDLQTILKLVKEARVAVA----GGINLDTIPDVIKLGPDIVIV 185 (206)
T ss_pred CCcCcccCCCCCH----HHHHHHHHhcCCCcEEEE----CCcCHHHHHHHHHcCCCEEEE
Confidence 12222222 345556665555445433 355667888999999997765
No 61
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=97.77 E-value=0.0049 Score=58.38 Aligned_cols=176 Identities=21% Similarity=0.178 Sum_probs=108.1
Q ss_pred CCHHHHHHHHHHHHhCCCCEEEEecc-CCCCC-cCCCCC-HH--------HHHHHhhhcCCCeEEEEe------CChHh-
Q 018252 145 VPTGVKVELIRRLVSSGLPVVEATSF-VSPKW-VPQLAD-AR--------DVMEAVRDLEGARLPVLT------PNLKG- 206 (359)
Q Consensus 145 ~~~~~k~~ia~~L~~aGv~~IEvG~f-vspk~-vPq~~D-~~--------ev~~~l~~~~~~~l~~l~------~n~~g- 206 (359)
-+.++-.++++.|.++ ++.||+|.+ ..|.+ .|...+ .. ++++.+++..+..+..++ .+...
T Consensus 15 p~~~~~~~~~~~l~~~-ad~iElgip~sdp~adG~~i~~~~~~a~~~g~~~~v~~vr~~~~~Pl~lM~y~n~~~~~~~~~ 93 (244)
T PRK13125 15 PNVESFKEFIIGLVEL-VDILELGIPPKYPKYDGPVIRKSHRKVKGLDIWPLLEEVRKDVSVPIILMTYLEDYVDSLDNF 93 (244)
T ss_pred CCHHHHHHHHHHHHhh-CCEEEECCCCCCCCCCCHHHHHHHHHHHHcCcHHHHHHHhccCCCCEEEEEecchhhhCHHHH
Confidence 4678889999999998 999999984 44421 122211 11 233333333333443222 23333
Q ss_pred HHHHHHcCCCEEEEecCCchHHHHhhhcCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHH
Q 018252 207 FEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKEL 286 (359)
Q Consensus 207 ie~a~~aGv~~V~i~~s~S~~~~~~n~~~t~~e~l~~i~~~i~~Ak~~G~~V~~~is~~fg~~~~~r~~~e~l~~~a~~l 286 (359)
++.+.++|++.|-+..-.- |+.+...+++++++++|+++...+. | .++++.+..+++.
T Consensus 94 i~~~~~~Gadgvii~dlp~-------------e~~~~~~~~~~~~~~~Gl~~~~~v~-----p---~T~~e~l~~~~~~- 151 (244)
T PRK13125 94 LNMARDVGADGVLFPDLLI-------------DYPDDLEKYVEIIKNKGLKPVFFTS-----P---KFPDLLIHRLSKL- 151 (244)
T ss_pred HHHHHHcCCCEEEECCCCC-------------CcHHHHHHHHHHHHHcCCCEEEEEC-----C---CCCHHHHHHHHHh-
Confidence 6778889999988852100 1223456788999999999855443 1 3456665555553
Q ss_pred HHCCcCEE--EEcCCCCCCcHHHHHHHHHHHHHhCCCceEEEEeCCCCCc-HHHHHHHHHHcCCCEE
Q 018252 287 HDMGCFEI--SLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQ-SLPNILISLQVSPMHA 350 (359)
Q Consensus 287 ~~~Gad~I--~L~DT~G~~~P~~v~~lv~~l~~~~p~~~L~~H~HNd~GL-AlANalaAv~AGa~~I 350 (359)
.-..+ +.--..|.-.+..+.+.++.+++..+..+|.+ +.|. ...++-.++++|||.+
T Consensus 152 ---~~~~l~msv~~~~g~~~~~~~~~~i~~lr~~~~~~~i~v----~gGI~~~e~i~~~~~~gaD~v 211 (244)
T PRK13125 152 ---SPLFIYYGLRPATGVPLPVSVERNIKRVRNLVGNKYLVV----GFGLDSPEDARDALSAGADGV 211 (244)
T ss_pred ---CCCEEEEEeCCCCCCCchHHHHHHHHHHHHhcCCCCEEE----eCCcCCHHHHHHHHHcCCCEE
Confidence 22333 22222455678888999999998876545553 5566 4466777789999965
No 62
>PRK07084 fructose-bisphosphate aldolase; Provisional
Probab=97.76 E-value=0.0047 Score=61.05 Aligned_cols=197 Identities=17% Similarity=0.161 Sum_probs=134.6
Q ss_pred CCCCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcCCCCCHHHHHHHhhh---cC--CCeEEEEeC---ChHhHHHHHHcC
Q 018252 143 NTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRD---LE--GARLPVLTP---NLKGFEAAIAAG 214 (359)
Q Consensus 143 ~~~~~~~k~~ia~~L~~aGv~~IEvG~fvspk~vPq~~D~~ev~~~l~~---~~--~~~l~~l~~---n~~gie~a~~aG 214 (359)
+....+....++++-.+.+-+.|=-.+...-+..+. .-...+...+.. .. .+.+..... +.+.+.+|+++|
T Consensus 30 N~~n~e~~~avi~AAee~~sPvIlq~s~~~~~~~g~-~~~~~~~~~~~~~a~~a~~~VPV~lHLDHg~~~e~i~~ai~~G 108 (321)
T PRK07084 30 NFNNMEQLQAIIQACVETKSPVILQVSKGARKYANA-TLLRYMAQGAVEYAKELGCPIPIVLHLDHGDSFELCKDCIDSG 108 (321)
T ss_pred EeCCHHHHHHHHHHHHHhCCCEEEEechhHHhhCCc-hHHHHHHHHHHHHHHHcCCCCcEEEECCCCCCHHHHHHHHHcC
Confidence 456788999999999999999974443211111110 001222222221 11 344444443 457889999999
Q ss_pred CCEEEEecCCchHHHHhhhcCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCC----C--CCCHHHHHHHHHHHHH
Q 018252 215 AKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVE----G--AIPPSKVAYVAKELHD 288 (359)
Q Consensus 215 v~~V~i~~s~S~~~~~~n~~~t~~e~l~~i~~~i~~Ak~~G~~V~~~is~~fg~~~~----~--r~~~e~l~~~a~~l~~ 288 (359)
...|.+=.|. ...+|+++.-++++++|+.+|+.|.+.|-..-|.++. . -++|+...+++++
T Consensus 109 ftSVMiD~S~----------lp~eeNI~~T~evv~~Ah~~GvsVEaElG~igg~ed~~~~~~~~~T~peeA~~Fv~~--- 175 (321)
T PRK07084 109 FSSVMIDGSH----------LPYEENVALTKKVVEYAHQFDVTVEGELGVLAGVEDEVSAEHHTYTQPEEVEDFVKK--- 175 (321)
T ss_pred CCEEEeeCCC----------CCHHHHHHHHHHHHHHHHHcCCeEEEEEeeecCccCCccCcccccCCHHHHHHHHHH---
Confidence 9998884431 3468889999999999999999999888865454443 1 4688887777764
Q ss_pred CCcCEE--EEcCCCCCC-------cHHHHHHHHHHHHHhCCCceEEEEeCC-------------------CCCcHHHHHH
Q 018252 289 MGCFEI--SLGDTIGVG-------TPGTVVPMLEAVMAVVPVEKLAVHLHD-------------------TYGQSLPNIL 340 (359)
Q Consensus 289 ~Gad~I--~L~DT~G~~-------~P~~v~~lv~~l~~~~p~~~L~~H~HN-------------------d~GLAlANal 340 (359)
.|+|.+ .+.-.=|.- .|.-=-++++.+++.++++||.+|+=. ++|..--...
T Consensus 176 TgvD~LAvaiGt~HG~Y~~~~~~~~p~Ld~d~L~~I~~~~~~vPLVLHGgSg~~~~~~~~~~~~g~~~~~~~Gi~~e~~~ 255 (321)
T PRK07084 176 TGVDSLAISIGTSHGAYKFKPGQCPPPLRFDILEEIEKRIPGFPIVLHGSSSVPQEYVKTINEYGGKLKDAIGIPEEQLR 255 (321)
T ss_pred hCCCEEeeccccccccccCCCCCCCCccCHHHHHHHHHhcCCCCEEEeCCCCCcHHHHHHHHHhcCccccCCCCCHHHHH
Confidence 688853 444444443 244445788889998876899999877 4488999999
Q ss_pred HHHHcCCCEEece
Q 018252 341 ISLQVSPMHAKPC 353 (359)
Q Consensus 341 aAv~AGa~~ID~t 353 (359)
.|++.|+.-|+..
T Consensus 256 kai~~GI~KINi~ 268 (321)
T PRK07084 256 KAAKSAVCKINID 268 (321)
T ss_pred HHHHcCCceeccc
Confidence 9999999988754
No 63
>PRK06801 hypothetical protein; Provisional
Probab=97.74 E-value=0.0053 Score=59.87 Aligned_cols=197 Identities=16% Similarity=0.139 Sum_probs=129.4
Q ss_pred cccCCCCC--CCCCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcCCCCCHHHHHHHhh---hcCCCeEEEEeC---ChHh
Q 018252 135 RDGLQNEK--NTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVR---DLEGARLPVLTP---NLKG 206 (359)
Q Consensus 135 RDG~Q~~~--~~~~~~~k~~ia~~L~~aGv~~IEvG~fvspk~vPq~~D~~ev~~~l~---~~~~~~l~~l~~---n~~g 206 (359)
+.+.+..+ +....+.-..++++-.+.+.+.|=-.+...-++ ...+.+...++ +...+.+..... +...
T Consensus 14 ~~~~yaV~Afn~~n~e~~~avi~AAe~~~~PvIl~~~~~~~~~----~~~~~~~~~~~~~a~~~~vpV~lHlDH~~~~e~ 89 (286)
T PRK06801 14 RKHGYALGAFNVLDSHFLRALFAAAKQERSPFIINIAEVHFKY----ISLESLVEAVKFEAARHDIPVVLNLDHGLHFEA 89 (286)
T ss_pred HHCCceEEEEeeCCHHHHHHHHHHHHHHCCCEEEEeCcchhhc----CCHHHHHHHHHHHHHHCCCCEEEECCCCCCHHH
Confidence 33444443 456789999999999999999974443222121 12233333333 223444555443 4578
Q ss_pred HHHHHHcCCCEEEEecCCchHHHHhhhcCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCC----------CCCH
Q 018252 207 FEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEG----------AIPP 276 (359)
Q Consensus 207 ie~a~~aGv~~V~i~~s~S~~~~~~n~~~t~~e~l~~i~~~i~~Ak~~G~~V~~~is~~fg~~~~~----------r~~~ 276 (359)
+++|++.|++.|.+=.+. .+.+|.++..++++++|+.+|+.|.+.+-. .|..+.+ -++|
T Consensus 90 i~~Ai~~GftSVm~D~S~----------l~~eeNi~~t~~v~~~a~~~gv~VE~ElG~-vgg~e~~v~~~~~~~~~~T~p 158 (286)
T PRK06801 90 VVRALRLGFSSVMFDGST----------LEYEENVRQTREVVKMCHAVGVSVEAELGA-VGGDEGGALYGEADSAKFTDP 158 (286)
T ss_pred HHHHHHhCCcEEEEcCCC----------CCHHHHHHHHHHHHHHHHHcCCeEEeecCc-ccCCCCCcccCCcccccCCCH
Confidence 999999999999984332 245788999999999999999998777764 4432211 3466
Q ss_pred HHHHHHHHHHHHCCcCEEEEcCCCCCC------cHHHHHHHHHHHHHhCCCceEEEEeCCCCCcHHHHHHHHHHcCCCEE
Q 018252 277 SKVAYVAKELHDMGCFEISLGDTIGVG------TPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQVSPMHA 350 (359)
Q Consensus 277 e~l~~~a~~l~~~Gad~I~L~DT~G~~------~P~~v~~lv~~l~~~~p~~~L~~H~HNd~GLAlANalaAv~AGa~~I 350 (359)
++..++++ +.|+|.+.+ ++|.. .|.-=-++++.+++..+ +||..|+= -|....|...++++|++-|
T Consensus 159 e~a~~f~~---~tgvD~LAv--aiGt~Hg~y~~~~~l~~e~l~~i~~~~~-~PLVlHGG--Sgi~~e~~~~~i~~Gi~KI 230 (286)
T PRK06801 159 QLARDFVD---RTGIDALAV--AIGNAHGKYKGEPKLDFARLAAIHQQTG-LPLVLHGG--SGISDADFRRAIELGIHKI 230 (286)
T ss_pred HHHHHHHH---HHCcCEEEe--ccCCCCCCCCCCCCCCHHHHHHHHHhcC-CCEEEECC--CCCCHHHHHHHHHcCCcEE
Confidence 66555554 469998777 33322 12222345667777765 68988874 4677899999999999998
Q ss_pred ecee
Q 018252 351 KPCF 354 (359)
Q Consensus 351 D~tl 354 (359)
...-
T Consensus 231 Nv~T 234 (286)
T PRK06801 231 NFYT 234 (286)
T ss_pred Eehh
Confidence 7643
No 64
>PRK07360 FO synthase subunit 2; Reviewed
Probab=97.72 E-value=0.0022 Score=64.49 Aligned_cols=198 Identities=12% Similarity=0.075 Sum_probs=128.4
Q ss_pred CCCCCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcCCCCCHHHHHHHhh---h-cCCCeEEEEeC-------------Ch
Q 018252 142 KNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVR---D-LEGARLPVLTP-------------NL 204 (359)
Q Consensus 142 ~~~~~~~~k~~ia~~L~~aGv~~IEvG~fvspk~vPq~~D~~ev~~~l~---~-~~~~~l~~l~~-------------n~ 204 (359)
...++.++.++.++.+.+.|+..+-+.+...| ...+.+.+.+.++ + .+++.+.++++ ..
T Consensus 88 ~y~ls~eeI~~~a~~a~~~G~~~i~l~~G~~p----~~~~~e~~~~~i~~ik~~~~~i~i~a~s~~ei~~~~~~~G~~~~ 163 (371)
T PRK07360 88 AFWLTIAEILEKAAEAVKRGATEVCIQGGLHP----AADSLEFYLEILEAIKEEFPDIHLHAFSPMEVYFAAREDGLSYE 163 (371)
T ss_pred CeeCCHHHHHHHHHHHHhCCCCEEEEccCCCC----CCCcHHHHHHHHHHHHHhCCCcceeeCCHHHHHHHHhhcCCCHH
Confidence 45689999999999999999999988865444 2333444444444 3 35677766542 12
Q ss_pred HhHHHHHHcCCCEEEEecCCchHHH---Hh--hhc-CCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHH
Q 018252 205 KGFEAAIAAGAKEVAIFASASEAFS---KS--NIN-CSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSK 278 (359)
Q Consensus 205 ~gie~a~~aGv~~V~i~~s~S~~~~---~~--n~~-~t~~e~l~~i~~~i~~Ak~~G~~V~~~is~~fg~~~~~r~~~e~ 278 (359)
+.+++..++|++.+.- ...+.+. +. ..+ ++.++ ..++++.|+++|+++...+. ||. --++++
T Consensus 164 e~l~~LkeAGld~~~~--t~~e~l~~~vr~~i~p~~~s~~~----~l~~i~~a~~~Gl~~~sg~i--~G~----gEt~ed 231 (371)
T PRK07360 164 EVLKALKDAGLDSMPG--TAAEILVDEVRRIICPEKIKTAE----WIEIVKTAHKLGLPTTSTMM--YGH----VETPEH 231 (371)
T ss_pred HHHHHHHHcCCCcCCC--cchhhccHHHHHhhCCCCCCHHH----HHHHHHHHHHcCCCceeeEE--eeC----CCCHHH
Confidence 4578888999998851 1112211 11 111 34433 36889999999999876665 653 127788
Q ss_pred HHHHHHHHHHCCcCE------EEE---------cCCCCC---CcHHHHHHHHHHHHHhCCC--ceEEEEeCCCCCcHHHH
Q 018252 279 VAYVAKELHDMGCFE------ISL---------GDTIGV---GTPGTVVPMLEAVMAVVPV--EKLAVHLHDTYGQSLPN 338 (359)
Q Consensus 279 l~~~a~~l~~~Gad~------I~L---------~DT~G~---~~P~~v~~lv~~l~~~~p~--~~L~~H~HNd~GLAlAN 338 (359)
.++.+..+.+.+++. |-+ .+.... .+|.+..++++..|=.+|+ +.|..-. ..+|.. -
T Consensus 232 rv~~l~~lr~l~~~~~g~~~fIp~~f~~~~Tpl~~~~~~~~~~~~~~~lr~iAi~Rl~lp~~~~~i~a~~-~~lg~~--~ 308 (371)
T PRK07360 232 RIDHLLILREIQQETGGITEFVPLPFVHENAPLYERGRVKGGAPGLEDLLLYAVSRIFLGNWIKNIQASW-VKLGLK--L 308 (371)
T ss_pred HHHHHHHHHHhchhhCCeeEEEeccccCCCCccccccccCCCCCHHHHHHHHHHHHHhcCCCCCCeeccc-eeeCHH--H
Confidence 888888888887764 322 232221 4678888888887777786 3344333 344433 4
Q ss_pred HHHHHHcCCCEEeceeeecc
Q 018252 339 ILISLQVSPMHAKPCFTFAY 358 (359)
Q Consensus 339 alaAv~AGa~~ID~tl~~~~ 358 (359)
...++.+||+-+.++++-.|
T Consensus 309 ~~~~l~~Gan~~~~~~~~~~ 328 (371)
T PRK07360 309 AQVALNCGANDLGGTLMEEH 328 (371)
T ss_pred HHHHHhcCCccCcCcCcccc
Confidence 56789999999998876444
No 65
>PRK08445 hypothetical protein; Provisional
Probab=97.66 E-value=0.0045 Score=61.84 Aligned_cols=193 Identities=10% Similarity=0.032 Sum_probs=122.5
Q ss_pred CCCCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcCCCCCHH---HHHHHhh-hcCCCeEEEEeCC-------------hH
Q 018252 143 NTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADAR---DVMEAVR-DLEGARLPVLTPN-------------LK 205 (359)
Q Consensus 143 ~~~~~~~k~~ia~~L~~aGv~~IEvG~fvspk~vPq~~D~~---ev~~~l~-~~~~~~l~~l~~n-------------~~ 205 (359)
..++.++.++.++...+.|.+.|=+-....|. .+.+ ++++.++ ..|++++.++.+. .+
T Consensus 71 y~l~~eeI~~~~~~a~~~g~~~i~~~gg~~~~-----~~~e~~~~l~~~Ik~~~p~i~~~a~s~~ei~~~a~~~~~~~~e 145 (348)
T PRK08445 71 YILSFEEIDKKIEELLAIGGTQILFQGGVHPK-----LKIEWYENLVSHIAQKYPTITIHGFSAVEIDYIAKISKISIKE 145 (348)
T ss_pred eeCCHHHHHHHHHHHHHcCCCEEEEecCCCCC-----CCHHHHHHHHHHHHHHCCCcEEEEccHHHHHHHHHHhCCCHHH
Confidence 45799999999999999999876433222321 2333 3444444 3577888776542 34
Q ss_pred hHHHHHHcCCCEEE-E-ecCCchHHHHh--hhcCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHH
Q 018252 206 GFEAAIAAGAKEVA-I-FASASEAFSKS--NINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAY 281 (359)
Q Consensus 206 gie~a~~aGv~~V~-i-~~s~S~~~~~~--n~~~t~~e~l~~i~~~i~~Ak~~G~~V~~~is~~fg~~~~~r~~~e~l~~ 281 (359)
.+++..++|++.+. . .-..++-..+. +-++|.++. .++++.|+++|+++...+. ||-. -++++.++
T Consensus 146 ~L~~LkeAGl~~~~g~glE~~~d~v~~~~~pk~~t~~~~----i~~i~~a~~~Gi~~~sg~i--~G~~----Et~edr~~ 215 (348)
T PRK08445 146 VLERLQAKGLSSIPGAGAEILSDRVRDIIAPKKLDSDRW----LEVHRQAHLIGMKSTATMM--FGTV----ENDEEIIE 215 (348)
T ss_pred HHHHHHHcCCCCCCCCceeeCCHHHHHhhCCCCCCHHHH----HHHHHHHHHcCCeeeeEEE--ecCC----CCHHHHHH
Confidence 57777889999874 3 33333333332 225666654 4889999999999987775 6642 25666666
Q ss_pred HHHHHHHCCcC-----EEE-----EcCCC--------CCCcHHHHHHHHHHHHHhCCC---ceEEEEeCCCCCcHHHHHH
Q 018252 282 VAKELHDMGCF-----EIS-----LGDTI--------GVGTPGTVVPMLEAVMAVVPV---EKLAVHLHDTYGQSLPNIL 340 (359)
Q Consensus 282 ~a~~l~~~Gad-----~I~-----L~DT~--------G~~~P~~v~~lv~~l~~~~p~---~~L~~H~HNd~GLAlANal 340 (359)
.+..+.+.+.+ .+. -.+|- ..++|.+.-++++..|=.+|+ ++-++ -.+|..+ +.
T Consensus 216 ~l~~lreLq~~~~g~~~fi~~~~~p~~tpl~~~~~~~~~~~~~e~Lr~iAv~Rl~l~~~~~i~a~~---~~~g~~~--~~ 290 (348)
T PRK08445 216 HWERIRDLQDETGGFRAFILWSFQPDNTPLKEEIPEIKKQSSNRYLRLLAVSRLFLDNFKNIQSSW---VTQGSYI--GQ 290 (348)
T ss_pred HHHHHHHHHHHhCCeeEEeccccCCCCCcccccCCCCCCCCHHHHHHHHHHHHHhCCCCCCccCCC---cccCHHH--HH
Confidence 66666655442 221 12321 137788888888777665665 33343 2445544 58
Q ss_pred HHHHcCCCEEeceee
Q 018252 341 ISLQVSPMHAKPCFT 355 (359)
Q Consensus 341 aAv~AGa~~ID~tl~ 355 (359)
.|+.+||+-+++|+.
T Consensus 291 ~~L~~Gand~~gt~~ 305 (348)
T PRK08445 291 LALLFGANDLGSTMM 305 (348)
T ss_pred HHHhcCCccCccccc
Confidence 899999999999985
No 66
>TIGR03700 mena_SCO4494 putative menaquinone biosynthesis protein, SCO4494 family. Members of this protein family appear to be involved in menaquinone biosynthesis by an alternate pathway via futalosine, based on close phylogenetic correlation with known markers of the futalosine pathway, gene clustering in many organisms, and paralogy with the SCO4550 protein.
Probab=97.66 E-value=0.0045 Score=61.70 Aligned_cols=196 Identities=14% Similarity=0.090 Sum_probs=126.1
Q ss_pred CCCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcCCCCCHHHHHHHhhh-cCCCeEEEEeCC-------------hHhHHH
Q 018252 144 TVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRD-LEGARLPVLTPN-------------LKGFEA 209 (359)
Q Consensus 144 ~~~~~~k~~ia~~L~~aGv~~IEvG~fvspk~vPq~~D~~ev~~~l~~-~~~~~l~~l~~n-------------~~gie~ 209 (359)
.++.++.++.++...+.|++.|-+.+...|.. + .....++++.+++ .|++.+.++++. .+.+++
T Consensus 78 ~l~~eeI~~~a~~~~~~G~~~v~l~~G~~p~~-~-~~~~~e~i~~Ik~~~p~i~i~~~~~~ei~~~~~~~g~~~~e~l~~ 155 (351)
T TIGR03700 78 AMSLEEIVARVKEAYAPGATEVHIVGGLHPNL-P-FEWYLDMIRTLKEAYPDLHVKAFTAVEIHHFSKISGLPTEEVLDE 155 (351)
T ss_pred CCCHHHHHHHHHHHHHCCCcEEEEecCCCCCC-C-HHHHHHHHHHHHHHCCCceEEeCCHHHHHHHHHHcCCCHHHHHHH
Confidence 48999999999999999999998876555431 1 1122344444443 477888776541 234788
Q ss_pred HHHcCCCEEEEecCCchHHHH---hhhcCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHH
Q 018252 210 AIAAGAKEVAIFASASEAFSK---SNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKEL 286 (359)
Q Consensus 210 a~~aGv~~V~i~~s~S~~~~~---~n~~~t~~e~l~~i~~~i~~Ak~~G~~V~~~is~~fg~~~~~r~~~e~l~~~a~~l 286 (359)
..++|++.+.-. ..|++.. .++..+ ....++..++++.|+++|+++...++ +|.. -++++.++.+..+
T Consensus 156 LkeAGld~~~~~--g~E~~~~~v~~~i~~~-~~~~~~~l~~i~~a~~~Gi~~~sg~i--~Glg----Et~edrv~~l~~L 226 (351)
T TIGR03700 156 LKEAGLDSMPGG--GAEIFAEEVRQQICPE-KISAERWLEIHRTAHELGLKTNATML--YGHI----ETPAHRVDHMLRL 226 (351)
T ss_pred HHHcCCCcCCCC--cccccCHHHHhhcCCC-CCCHHHHHHHHHHHHHcCCCcceEEE--eeCC----CCHHHHHHHHHHH
Confidence 888999987521 1222211 122221 11234556888999999999977776 6641 3677888888888
Q ss_pred HHCCcCE------EEE----cCCC------CCCcHHHHHHHHHHHHHhCCC---ceEEEEeCCCCCcHHHHHHHHHHcCC
Q 018252 287 HDMGCFE------ISL----GDTI------GVGTPGTVVPMLEAVMAVVPV---EKLAVHLHDTYGQSLPNILISLQVSP 347 (359)
Q Consensus 287 ~~~Gad~------I~L----~DT~------G~~~P~~v~~lv~~l~~~~p~---~~L~~H~HNd~GLAlANalaAv~AGa 347 (359)
.+.+++. |-+ .+|- ...+|.+..++++..|=.+|+ ++..+ ...| ...+..++.+||
T Consensus 227 r~l~~~~~~f~~fiP~~f~~~~tpl~~~~~~~~~~~e~lr~iA~~Rl~l~~i~~i~a~w---~~~~--~~~~~~~L~~Ga 301 (351)
T TIGR03700 227 RELQDETGGFQAFIPLAFQPDNNRLNRLLAKGPTGLDDLKTLAVSRLYLDNIPHIKAYW---VMLG--LKLAQVALAFGV 301 (351)
T ss_pred HHhhHhhCCceEEEeecccCCCCcccCCCCCCCCHHHHHHHHHHHHHhcCCCCcccccc---cccC--HHHHHHHHhcCC
Confidence 8777643 444 2443 456788888888877766665 22221 1113 345689999999
Q ss_pred CEEeceee
Q 018252 348 MHAKPCFT 355 (359)
Q Consensus 348 ~~ID~tl~ 355 (359)
+=+.+|++
T Consensus 302 nd~ggt~~ 309 (351)
T TIGR03700 302 NDLDGTVV 309 (351)
T ss_pred CCCCccCc
Confidence 99998865
No 67
>PRK08185 hypothetical protein; Provisional
Probab=97.62 E-value=0.014 Score=56.81 Aligned_cols=196 Identities=15% Similarity=0.160 Sum_probs=129.6
Q ss_pred ccCCCCC--CCCCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcCCCCCHHHHHHHhh---hcCCCeEEEEeC---ChHhH
Q 018252 136 DGLQNEK--NTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVR---DLEGARLPVLTP---NLKGF 207 (359)
Q Consensus 136 DG~Q~~~--~~~~~~~k~~ia~~L~~aGv~~IEvG~fvspk~vPq~~D~~ev~~~l~---~~~~~~l~~l~~---n~~gi 207 (359)
++.+..+ +.+..+.-..++++-.+.+.+.|=-.+...-+..+ .++...++ +...+.+..... +.+.+
T Consensus 10 ~~~yaV~AfN~~n~e~~~avi~AAee~~sPvIl~~~~~~~~~~~-----~~~~~~~~~~a~~~~vPV~lHLDHg~~~e~i 84 (283)
T PRK08185 10 EHQFAVGAFNVADSCFLRAVVEEAEANNAPAIIAIHPNELDFLG-----DNFFAYVRERAKRSPVPFVIHLDHGATIEDV 84 (283)
T ss_pred HcCceEEEEEeCCHHHHHHHHHHHHHhCCCEEEEeCcchhhhcc-----HHHHHHHHHHHHHCCCCEEEECCCCCCHHHH
Confidence 3444443 45778999999999999999998555432222222 11233333 223455555544 45789
Q ss_pred HHHHHcCCCEEEEecCCchHHHHhhhcCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCC-CC-----C---CCCHHH
Q 018252 208 EAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCP-VE-----G---AIPPSK 278 (359)
Q Consensus 208 e~a~~aGv~~V~i~~s~S~~~~~~n~~~t~~e~l~~i~~~i~~Ak~~G~~V~~~is~~fg~~-~~-----~---r~~~e~ 278 (359)
+.+++.|.+.|.+=.+ ..+.+|.++..++++++|+..|+.|.+.|-. .|.. +. + -++|++
T Consensus 85 ~~ai~~Gf~SVM~D~S----------~l~~eeNi~~t~~vv~~a~~~gv~vE~ElG~-vg~~e~~~~~~~~~~~~t~pee 153 (283)
T PRK08185 85 MRAIRCGFTSVMIDGS----------LLPYEENVALTKEVVELAHKVGVSVEGELGT-IGNTGTSIEGGVSEIIYTDPEQ 153 (283)
T ss_pred HHHHHcCCCEEEEeCC----------CCCHHHHHHHHHHHHHHHHHcCCeEEEEEee-ccCcccccccccccccCCCHHH
Confidence 9999999999887443 2356889999999999999999999887765 4431 11 1 347766
Q ss_pred HHHHHHHHHHCCcCEEEE--cCCCCCC----cHHHHHHHHHHHHHhCCCceEEEEeCCCCCcHHHHHHHHHHcCCCEEec
Q 018252 279 VAYVAKELHDMGCFEISL--GDTIGVG----TPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQVSPMHAKP 352 (359)
Q Consensus 279 l~~~a~~l~~~Gad~I~L--~DT~G~~----~P~~v~~lv~~l~~~~p~~~L~~H~HNd~GLAlANalaAv~AGa~~ID~ 352 (359)
..++++ +.|+|.+.+ .-.-|.- .|.---++++.+++..+ +||.+|+--+. .-.....|+..|+.-|+.
T Consensus 154 a~~f~~---~TgvD~LAvaiGt~HG~y~~~~kp~L~~e~l~~I~~~~~-iPLVlHGgsg~--~~e~~~~ai~~GI~KiNi 227 (283)
T PRK08185 154 AEDFVS---RTGVDTLAVAIGTAHGIYPKDKKPELQMDLLKEINERVD-IPLVLHGGSAN--PDAEIAESVQLGVGKINI 227 (283)
T ss_pred HHHHHH---hhCCCEEEeccCcccCCcCCCCCCCcCHHHHHHHHHhhC-CCEEEECCCCC--CHHHHHHHHHCCCeEEEe
Confidence 555444 348886555 2222221 24444677888888775 79998887655 467789999999998875
Q ss_pred e
Q 018252 353 C 353 (359)
Q Consensus 353 t 353 (359)
.
T Consensus 228 ~ 228 (283)
T PRK08185 228 S 228 (283)
T ss_pred C
Confidence 4
No 68
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=97.61 E-value=0.0047 Score=57.69 Aligned_cols=154 Identities=21% Similarity=0.313 Sum_probs=107.9
Q ss_pred CCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcCCCCCHHHHHHHhhh-cC---CCeE-EEEeCChHhHHHHHHcCCCEEE
Q 018252 145 VPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRD-LE---GARL-PVLTPNLKGFEAAIAAGAKEVA 219 (359)
Q Consensus 145 ~~~~~k~~ia~~L~~aGv~~IEvG~fvspk~vPq~~D~~ev~~~l~~-~~---~~~l-~~l~~n~~gie~a~~aGv~~V~ 219 (359)
.+.++-+++++.|.+.|++.||+++- +| ++.+.++.+++ .+ ++.+ .+-+.+.++++.++++|.+-+-
T Consensus 22 ~~~~~a~~~~~al~~~Gi~~iEit~~-~~-------~a~~~i~~l~~~~~~~p~~~vGaGTV~~~~~~~~a~~aGA~Fiv 93 (213)
T PRK06552 22 ESKEEALKISLAVIKGGIKAIEVTYT-NP-------FASEVIKELVELYKDDPEVLIGAGTVLDAVTARLAILAGAQFIV 93 (213)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEECC-Cc-------cHHHHHHHHHHHcCCCCCeEEeeeeCCCHHHHHHHHHcCCCEEE
Confidence 37899999999999999999999973 33 44555566653 32 3444 2334588999999999977543
Q ss_pred EecCCchHHHHhhhcCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHHCCcCEEEE--c
Q 018252 220 IFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISL--G 297 (359)
Q Consensus 220 i~~s~S~~~~~~n~~~t~~e~l~~i~~~i~~Ak~~G~~V~~~is~~fg~~~~~r~~~e~l~~~a~~l~~~Gad~I~L--~ 297 (359)
|+.+. .+++++|+++|+.+. | |-.+|.++.. +.++|+|.|.+ +
T Consensus 94 -----sP~~~---------------~~v~~~~~~~~i~~i---------P--G~~T~~E~~~----A~~~Gad~vklFPa 138 (213)
T PRK06552 94 -----SPSFN---------------RETAKICNLYQIPYL---------P--GCMTVTEIVT----ALEAGSEIVKLFPG 138 (213)
T ss_pred -----CCCCC---------------HHHHHHHHHcCCCEE---------C--CcCCHHHHHH----HHHcCCCEEEECCc
Confidence 23221 267889999999762 1 3457766443 35699999998 3
Q ss_pred CCCCCCcHHHHHHHHHHHHHhCCCceEEEEeCCCCCcHHHHHHHHHHcCCCEEec
Q 018252 298 DTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQVSPMHAKP 352 (359)
Q Consensus 298 DT~G~~~P~~v~~lv~~l~~~~p~~~L~~H~HNd~GLAlANalaAv~AGa~~ID~ 352 (359)
+..| |. +++.++..+|++++.. +=|....|+-.-+++|++.|-+
T Consensus 139 ~~~G---~~----~ik~l~~~~p~ip~~a----tGGI~~~N~~~~l~aGa~~vav 182 (213)
T PRK06552 139 STLG---PS----FIKAIKGPLPQVNVMV----TGGVNLDNVKDWFAAGADAVGI 182 (213)
T ss_pred ccCC---HH----HHHHHhhhCCCCEEEE----ECCCCHHHHHHHHHCCCcEEEE
Confidence 4433 33 4666777788766654 4577789999999999988754
No 69
>PRK13399 fructose-1,6-bisphosphate aldolase; Provisional
Probab=97.61 E-value=0.0068 Score=60.54 Aligned_cols=211 Identities=16% Similarity=0.181 Sum_probs=137.0
Q ss_pred ccCCCCC--CCCCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcCCCCCHHHHHHHhhh-cCCCeEEEEeC---ChHhHHH
Q 018252 136 DGLQNEK--NTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRD-LEGARLPVLTP---NLKGFEA 209 (359)
Q Consensus 136 DG~Q~~~--~~~~~~~k~~ia~~L~~aGv~~IEvG~fvspk~vPq~~D~~ev~~~l~~-~~~~~l~~l~~---n~~gie~ 209 (359)
++.+..+ +.+..+....++++-.+.+-+.|=-.+...-++.+ +.....+...+.+ .+.+.+..... +.+.+.+
T Consensus 15 ~~~yaV~AfN~~n~e~~~avi~AAEe~~sPvIlq~s~~~~~~~g-~~~~~~~v~~~ae~~~~VPVaLHLDHg~~~e~i~~ 93 (347)
T PRK13399 15 ENGYGVPAFNVNNMEQILAIMEAAEATDSPVILQASRGARKYAG-DAMLRHMVLAAAEMYPDIPICLHQDHGNSPATCQS 93 (347)
T ss_pred HCCceEEEEEeCCHHHHHHHHHHHHHhCCCEEEECCcchhhhCC-HHHHHHHHHHHHHhcCCCcEEEECCCCCCHHHHHH
Confidence 3444443 55778999999999999999998544432222211 1111122222222 22355555554 4577899
Q ss_pred HHHcCCCEEEEecCCchHHHHhhhcCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCC-------C-----------C
Q 018252 210 AIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCP-------V-----------E 271 (359)
Q Consensus 210 a~~aGv~~V~i~~s~S~~~~~~n~~~t~~e~l~~i~~~i~~Ak~~G~~V~~~is~~fg~~-------~-----------~ 271 (359)
|+++|...|.+=.| .... -+...+.+|+++.-++++++|+..|+.|.+.|-..-+.+ + .
T Consensus 94 Ai~~GFtSVMiDgS--~l~~-~~~~~~~eeNI~~Trevve~Ah~~GvsVEaELG~igg~e~~~~g~ed~~~~~~~~~~~~ 170 (347)
T PRK13399 94 AIRSGFTSVMMDGS--LLAD-GKTPASYDYNVDVTRRVTEMAHAVGVSVEGELGCLGSLETGEAGEEDGVGAEGKLSHDQ 170 (347)
T ss_pred HHhcCCCEEEEeCC--CCCC-CCCccCHHHHHHHHHHHHHHHHHcCCeEEEEeeeccCcccccccccCCccccccccccc
Confidence 99999998887443 2210 112345789999999999999999999998886542222 2 1
Q ss_pred CCCCHHHHHHHHHHHHHCCcCE--EEEcCCCCCCc----HH---HHHHHHHHHHHhCCCceEEEEeCCC-----------
Q 018252 272 GAIPPSKVAYVAKELHDMGCFE--ISLGDTIGVGT----PG---TVVPMLEAVMAVVPVEKLAVHLHDT----------- 331 (359)
Q Consensus 272 ~r~~~e~l~~~a~~l~~~Gad~--I~L~DT~G~~~----P~---~v~~lv~~l~~~~p~~~L~~H~HNd----------- 331 (359)
.-++|+...+++++ .|+|. |.+.-.=|.-. |. -=.++++.+++.++++||.+|+=..
T Consensus 171 ~~T~PeeA~~Fv~~---TgvD~LAvaiGt~HG~Yk~~~~p~~~~L~~drl~eI~~~v~~vPLVLHGgSGvp~~~~~~~~~ 247 (347)
T PRK13399 171 MLTDPDQAVDFVQR---TGVDALAIAIGTSHGAYKFTRKPDGDILAIDRIEEIHARLPNTHLVMHGSSSVPQELQEIINA 247 (347)
T ss_pred cCCCHHHHHHHHHH---HCcCEEhhhhccccCCcCCCCCCChhhccHHHHHHHHhhcCCCCEEEeCCCCCCHHHHHHHHH
Confidence 14688887777765 58884 33333444432 32 2245778888888668999998664
Q ss_pred --------CCcHHHHHHHHHHcCCCEEece
Q 018252 332 --------YGQSLPNILISLQVSPMHAKPC 353 (359)
Q Consensus 332 --------~GLAlANalaAv~AGa~~ID~t 353 (359)
+|...-....|++.|+.-|+..
T Consensus 248 ~g~~~~~~~g~~~e~~~kai~~GI~KINi~ 277 (347)
T PRK13399 248 YGGKMKETYGVPVEEIQRGIKHGVRKVNID 277 (347)
T ss_pred hcCCccccCCCCHHHHHHHHHCCCeEEEeC
Confidence 4566889999999999988764
No 70
>TIGR01521 FruBisAldo_II_B fructose-bisphosphate aldolase, class II, Calvin cycle subtype. Members of this family are class II examples of the enzyme fructose-bisphosphate aldolase, an enzyme both of glycolysis and (in the opposite direction) of the Calvin cycle of CO2 fixation. A deep split separates the tightly conserved yeast/E. coli/Mycobacterium subtype (all species lacking the Calvin cycle) represented by model TIGR01520 from a broader group of aldolases that includes both tagatose- and fructose-bisphosphate aldolases. This model represents a distinct, elongated, very well conserved subtype within the latter group. Most species with this aldolase subtype have the Calvin cycle.
Probab=97.60 E-value=0.007 Score=60.45 Aligned_cols=210 Identities=14% Similarity=0.119 Sum_probs=136.9
Q ss_pred ccCCCCC--CCCCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcCCCCCHHHHHHHhhh-cCCCeEEEEeC---ChHhHHH
Q 018252 136 DGLQNEK--NTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRD-LEGARLPVLTP---NLKGFEA 209 (359)
Q Consensus 136 DG~Q~~~--~~~~~~~k~~ia~~L~~aGv~~IEvG~fvspk~vPq~~D~~ev~~~l~~-~~~~~l~~l~~---n~~gie~ 209 (359)
++.+..+ +.+..+....++++-.+.+-+.|=-.+...-+..+ +.....+...+.+ .+.+.+..... +.+.+.+
T Consensus 13 ~~~yAV~AfN~~n~e~~~aii~AAEe~~sPvIlq~s~~~~~~~g-~~~~~~~~~~~ae~~~~VPValHLDHg~~~e~i~~ 91 (347)
T TIGR01521 13 EFGYGVPAFNVNNMEQMRAIMEAADKTDSPVILQASRGARSYAG-APFLRHLILAAIEEYPHIPVVMHQDHGNSPATCQR 91 (347)
T ss_pred HcCceEEEEeeCCHHHHHHHHHHHHHhCCCEEEECCcchhhhCC-HHHHHHHHHHHHHhCCCCcEEEECCCCCCHHHHHH
Confidence 3444443 45778999999999999999998554432222211 1111222222222 22355555554 5678999
Q ss_pred HHHcCCCEEEEecCCchHHHHhhhcCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCC-------CC-----------
Q 018252 210 AIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCP-------VE----------- 271 (359)
Q Consensus 210 a~~aGv~~V~i~~s~S~~~~~~n~~~t~~e~l~~i~~~i~~Ak~~G~~V~~~is~~fg~~-------~~----------- 271 (359)
|+++|...|.+=.| ... ..+...+.+|+++.-++++++|+..|+.|.+-|-..-+.+ +.
T Consensus 92 Ai~~GFtSVMiDgS--~l~-~~~~~~p~eENI~~Tkevve~Ah~~GvsVEaELG~igg~e~~~~g~~d~~~~~~~~~~~~ 168 (347)
T TIGR01521 92 AIQLGFTSVMMDGS--LRE-DAKTPADYDYNVRVTAEVVAFAHAVGASVEGELGCLGSLETGMGEAEDGHGFEGVLDHSQ 168 (347)
T ss_pred HHHcCCCEEeecCc--CCc-ccCCCCCHHHHHHHHHHHHHHHHHcCCeEEEEeeecccccccccccccCcccccccchhh
Confidence 99999998887433 221 1234457899999999999999999999998887653332 21
Q ss_pred CCCCHHHHHHHHHHHHHCCcCE--EEEcCCCCCCc----H----HHHHHHHHHHHHhCCCceEEEEeCCC----------
Q 018252 272 GAIPPSKVAYVAKELHDMGCFE--ISLGDTIGVGT----P----GTVVPMLEAVMAVVPVEKLAVHLHDT---------- 331 (359)
Q Consensus 272 ~r~~~e~l~~~a~~l~~~Gad~--I~L~DT~G~~~----P----~~v~~lv~~l~~~~p~~~L~~H~HNd---------- 331 (359)
.-++|+...+++++ .|+|. |.+.-.=|.-. | .+ .++++.+++.++++||.+|+=..
T Consensus 169 ~~T~PeeA~~Fv~~---TgvD~LAvaiGt~HG~Yk~~~~p~~~~Ld-~~rL~eI~~~v~~vPLVLHGgSG~p~~~~~~~~ 244 (347)
T TIGR01521 169 LLTDPEEAADFVKK---TKVDALAVAIGTSHGAYKFTRKPTGEVLA-IQRIEEIHARLPDTHLVMHGSSSVPQEWLDIIN 244 (347)
T ss_pred cCCCHHHHHHHHHH---HCcCEEehhcccccCCcCCCCCCChhhcC-HHHHHHHHccCCCCCEEEeCCCCCchHhhHHHH
Confidence 14678777766653 47884 33333444442 4 23 34578888888668999998664
Q ss_pred ---------CCcHHHHHHHHHHcCCCEEece
Q 018252 332 ---------YGQSLPNILISLQVSPMHAKPC 353 (359)
Q Consensus 332 ---------~GLAlANalaAv~AGa~~ID~t 353 (359)
+|.--.....|++.|+.-|+..
T Consensus 245 ~~~~~~~~~~g~p~e~i~~ai~~GI~KVNi~ 275 (347)
T TIGR01521 245 EYGGEIKETYGVPVEEIVEGIKYGVRKVNID 275 (347)
T ss_pred hhcccccccCCCCHHHHHHHHHCCCeeEEeC
Confidence 3455788999999999988754
No 71
>TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist. This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase.
Probab=97.59 E-value=0.017 Score=56.20 Aligned_cols=196 Identities=16% Similarity=0.123 Sum_probs=123.8
Q ss_pred CCCCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcCCCCCHHH-HHHHhhhcCCCeEEEEeC---ChHhHHHHHHcCCCEE
Q 018252 143 NTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARD-VMEAVRDLEGARLPVLTP---NLKGFEAAIAAGAKEV 218 (359)
Q Consensus 143 ~~~~~~~k~~ia~~L~~aGv~~IEvG~fvspk~vPq~~D~~e-v~~~l~~~~~~~l~~l~~---n~~gie~a~~aGv~~V 218 (359)
+.+..+....++++-.+.+.+.|=..+...-+..+....... +...+++...+.+..... ..+.++++++.|++.|
T Consensus 22 n~~n~e~~~avi~aAe~~~~PvIl~~~~~~~~~~~~~~~~~~~~~~~a~~~~~vpv~lhlDH~~~~e~i~~ai~~Gf~sV 101 (282)
T TIGR01859 22 NFNNLEWTQAILEAAEEENSPVIIQVSEGAIKYMGGYKMAVAMVKTLIERMSIVPVALHLDHGSSYESCIKAIKAGFSSV 101 (282)
T ss_pred EECCHHHHHHHHHHHHHhCCCEEEEcCcchhhccCcHHHHHHHHHHHHHHCCCCeEEEECCCCCCHHHHHHHHHcCCCEE
Confidence 456788899999999999999985544322222221111111 122222222144433333 4577889999999998
Q ss_pred EEecCCchHHHHhhhcCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCC------CCCCCHHHHHHHHHHHHHCCcC
Q 018252 219 AIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPV------EGAIPPSKVAYVAKELHDMGCF 292 (359)
Q Consensus 219 ~i~~s~S~~~~~~n~~~t~~e~l~~i~~~i~~Ak~~G~~V~~~is~~fg~~~------~~r~~~e~l~~~a~~l~~~Gad 292 (359)
.+=.+. .+.+|.++..+++++.|+..|+.|.+.+-..=|.++ .+-++|+++.++.++ .|+|
T Consensus 102 mid~s~----------l~~~eni~~t~~v~~~a~~~gv~Ve~ElG~~gg~ed~~~g~~~~~t~~eea~~f~~~---tgvD 168 (282)
T TIGR01859 102 MIDGSH----------LPFEENLALTKKVVEIAHAKGVSVEAELGTLGGIEDGVDEKEAELADPDEAEQFVKE---TGVD 168 (282)
T ss_pred EECCCC----------CCHHHHHHHHHHHHHHHHHcCCEEEEeeCCCcCccccccccccccCCHHHHHHHHHH---HCcC
Confidence 884432 356788999999999999999988776654212222 224688776665542 4888
Q ss_pred EEEEc--CCCCCC--cHHHHHHHHHHHHHhCCCceEEEEeCCCCCcHHHHHHHHHHcCCCEEecee
Q 018252 293 EISLG--DTIGVG--TPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQVSPMHAKPCF 354 (359)
Q Consensus 293 ~I~L~--DT~G~~--~P~~v~~lv~~l~~~~p~~~L~~H~HNd~GLAlANalaAv~AGa~~ID~tl 354 (359)
-|.+. =.-|.. .|.-=-++++.+++.++ +||..|+ .-|+..-|...++++|++-|...-
T Consensus 169 ~Lavs~Gt~hg~~~~~~~l~~e~L~~i~~~~~-iPlv~hG--gSGi~~e~i~~~i~~Gi~kiNv~T 231 (282)
T TIGR01859 169 YLAAAIGTSHGKYKGEPGLDFERLKEIKELTN-IPLVLHG--ASGIPEEQIKKAIKLGIAKINIDT 231 (282)
T ss_pred EEeeccCccccccCCCCccCHHHHHHHHHHhC-CCEEEEC--CCCCCHHHHHHHHHcCCCEEEECc
Confidence 76642 111111 13222456677777765 6777665 557888899999999999987653
No 72
>TIGR00433 bioB biotin synthetase. Catalyzes the last step of the biotin biosynthesis pathway.
Probab=97.58 E-value=0.038 Score=53.13 Aligned_cols=194 Identities=11% Similarity=-0.013 Sum_probs=116.1
Q ss_pred CCCHHHHHHHHHHHHhCCCCEEEEec-cCCCCCcCCCCCHHHHHHHhhh---cCCCeEEEEe--CChHhHHHHHHcCCCE
Q 018252 144 TVPTGVKVELIRRLVSSGLPVVEATS-FVSPKWVPQLADARDVMEAVRD---LEGARLPVLT--PNLKGFEAAIAAGAKE 217 (359)
Q Consensus 144 ~~~~~~k~~ia~~L~~aGv~~IEvG~-fvspk~vPq~~D~~ev~~~l~~---~~~~~l~~l~--~n~~gie~a~~aGv~~ 217 (359)
..+.++.++.++.+.+.|++.+-+.. ...|. ..+..++++.+.+ ..++.+.+-. .+.+.++...++|++.
T Consensus 61 ~~~~eei~~~~~~~~~~g~~~~~l~~~g~~~~----~~~~~~~~~~i~~~~~~~~i~~~~~~g~~~~e~l~~Lk~aG~~~ 136 (296)
T TIGR00433 61 LKKVDEVLEEARKAKAAGATRFCLVASGRGPK----DREFMEYVEAMVQIVEEMGLKTCATLGLLDPEQAKRLKDAGLDY 136 (296)
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEEEEecCCCC----hHHHHHHHHHHHHHHHhCCCeEEecCCCCCHHHHHHHHHcCCCE
Confidence 46678889999999999998764422 11111 1122223332221 1345442222 1457788888999999
Q ss_pred EEEecCCch-HHHHhhhcCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHHCCcCEEEE
Q 018252 218 VAIFASASE-AFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISL 296 (359)
Q Consensus 218 V~i~~s~S~-~~~~~n~~~t~~e~l~~i~~~i~~Ak~~G~~V~~~is~~fg~~~~~r~~~e~l~~~a~~l~~~Gad~I~L 296 (359)
+.+.+-.++ .+.+ ++.. ...+...++++.++++|+.+...+. +|. . -+.+.+.+.++.+.+.|++.|.+
T Consensus 137 v~i~~E~~~~~~~~--i~~~--~s~~~~~~ai~~l~~~Gi~v~~~~i--~Gl-~---et~~d~~~~~~~l~~l~~~~i~l 206 (296)
T TIGR00433 137 YNHNLDTSQEFYSN--IIST--HTYDDRVDTLENAKKAGLKVCSGGI--FGL-G---ETVEDRIGLALALANLPPESVPI 206 (296)
T ss_pred EEEcccCCHHHHhh--ccCC--CCHHHHHHHHHHHHHcCCEEEEeEE--EeC-C---CCHHHHHHHHHHHHhCCCCEEEe
Confidence 888665554 3332 2221 2345566788888999999877765 664 2 26788888999999999886642
Q ss_pred ------cCC----CCCCcHHHHHHHHHHHHHhCCCceEEEEeCCCCCcHHHHHHHHHHcCCCEEe
Q 018252 297 ------GDT----IGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQVSPMHAK 351 (359)
Q Consensus 297 ------~DT----~G~~~P~~v~~lv~~l~~~~p~~~L~~H~HNd~GLAlANalaAv~AGa~~ID 351 (359)
+.| ....+++++.+++...+..+|...|.+=+=--.-+.---...|+.+||+.|=
T Consensus 207 ~~l~p~~gT~l~~~~~~s~~~~~~~ia~~r~~lp~~~i~~~~~~~~~~~~~~~~~~l~~G~n~i~ 271 (296)
T TIGR00433 207 NFLVKIKGTPLADNKELSADDALKTIALARIIMPKAEIRLAGGREVNMRELQQAMCFMAGANSIF 271 (296)
T ss_pred eeeEEcCCCccCCCCCCCHHHHHHHHHHHHHHCCcceEEEeCCcchhhhhhHHHHHHHhcCceEE
Confidence 233 1234557888888888888886445221111111121112247999988764
No 73
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=97.55 E-value=0.0064 Score=57.63 Aligned_cols=169 Identities=21% Similarity=0.263 Sum_probs=101.8
Q ss_pred CHHHHHHHHHHHHhCCCCEEEEeccCCCCCcCCCCCHH-----------------HHHHHhhhc---CCCeEEEEeC-Ch
Q 018252 146 PTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADAR-----------------DVMEAVRDL---EGARLPVLTP-NL 204 (359)
Q Consensus 146 ~~~~k~~ia~~L~~aGv~~IEvG~fvspk~vPq~~D~~-----------------ev~~~l~~~---~~~~l~~l~~-n~ 204 (359)
+.+.-.++++.|.++|++.||+|.+.+. |. .|-. ..++.++.+ .++.+..++- |.
T Consensus 12 ~~~~~~~~~~~l~~~Gad~iel~iPfsd---Pv-~DG~~I~~a~~~al~~g~~~~~~~~~~~~vr~~~~~pv~lm~y~n~ 87 (242)
T cd04724 12 DLETTLEILKALVEAGADIIELGIPFSD---PV-ADGPVIQAASERALANGVTLKDVLELVKEIRKKNTIPIVLMGYYNP 87 (242)
T ss_pred CHHHHHHHHHHHHHCCCCEEEECCCCCC---CC-CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhhcCCCCEEEEEecCH
Confidence 4577889999999999999999974321 21 2211 223333322 2344444443 42
Q ss_pred -------HhHHHHHHcCCCEEEEecCCchHHHHhhhcCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHH
Q 018252 205 -------KGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPS 277 (359)
Q Consensus 205 -------~gie~a~~aGv~~V~i~~s~S~~~~~~n~~~t~~e~l~~i~~~i~~Ak~~G~~V~~~is~~fg~~~~~r~~~e 277 (359)
+-++.+.++|++.+-+.. .+ .+...++++.++++|++....+. | .++.+
T Consensus 88 ~~~~G~~~fi~~~~~aG~~giiipD----l~------------~ee~~~~~~~~~~~g~~~i~~i~-----P---~T~~~ 143 (242)
T cd04724 88 ILQYGLERFLRDAKEAGVDGLIIPD----LP------------PEEAEEFREAAKEYGLDLIFLVA-----P---TTPDE 143 (242)
T ss_pred HHHhCHHHHHHHHHHCCCcEEEECC----CC------------HHHHHHHHHHHHHcCCcEEEEeC-----C---CCCHH
Confidence 336777889999877742 11 23566888999999998754332 1 23444
Q ss_pred HHHHHHHHHHHCC-cCEEEEcCCCCCCc--HHHHHHHHHHHHHhCCCceEEEEeCCCCCcHHH-HHHHHHHcCCCEE
Q 018252 278 KVAYVAKELHDMG-CFEISLGDTIGVGT--PGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLP-NILISLQVSPMHA 350 (359)
Q Consensus 278 ~l~~~a~~l~~~G-ad~I~L~DT~G~~~--P~~v~~lv~~l~~~~p~~~L~~H~HNd~GLAlA-NalaAv~AGa~~I 350 (359)
.+..+++.. .| +..+.+.-+.|..+ +..+.+.++.+++. .+.+|.+ +.|.... |+-..+++ |+.+
T Consensus 144 ~i~~i~~~~--~~~vy~~s~~g~tG~~~~~~~~~~~~i~~lr~~-~~~pI~v----ggGI~~~e~~~~~~~~-ADgv 212 (242)
T cd04724 144 RIKKIAELA--SGFIYYVSRTGVTGARTELPDDLKELIKRIRKY-TDLPIAV----GFGISTPEQAAEVAKY-ADGV 212 (242)
T ss_pred HHHHHHhhC--CCCEEEEeCCCCCCCccCCChhHHHHHHHHHhc-CCCcEEE----EccCCCHHHHHHHHcc-CCEE
Confidence 444443321 12 23445566666654 57788999999986 3456666 4555544 66666777 7754
No 74
>PRK08444 hypothetical protein; Provisional
Probab=97.54 E-value=0.0051 Score=61.66 Aligned_cols=200 Identities=12% Similarity=0.124 Sum_probs=128.6
Q ss_pred CCCCCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcCCCCCHHHHHHHhhh-cCCCeEEEEeCCh-------------HhH
Q 018252 142 KNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRD-LEGARLPVLTPNL-------------KGF 207 (359)
Q Consensus 142 ~~~~~~~~k~~ia~~L~~aGv~~IEvG~fvspk~vPq~~D~~ev~~~l~~-~~~~~l~~l~~n~-------------~gi 207 (359)
...++.++.++.++...+.|+..|-+-+...|.. .+....++++.+++ .|++.+-++++.+ +.+
T Consensus 77 ~y~ls~eeI~~~a~~a~~~G~~ei~iv~G~~p~~--~~e~y~e~ir~Ik~~~p~i~i~a~s~~Ei~~~a~~~g~~~~e~l 154 (353)
T PRK08444 77 PYTMSHEEILEIVKNSVKRGIKEVHIVSAHNPNY--GYEWYLEIFKKIKEAYPNLHVKAMTAAEVDFLSRKFGKSYEEVL 154 (353)
T ss_pred cccCCHHHHHHHHHHHHHCCCCEEEEeccCCCCC--CHHHHHHHHHHHHHHCCCceEeeCCHHHHHHHHHHcCCCHHHHH
Confidence 3569999999999999999999998876555532 01122344555553 4788888866522 345
Q ss_pred HHHHHcCCCEEEEecCCchHHHH---hhhcCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHH
Q 018252 208 EAAIAAGAKEVAIFASASEAFSK---SNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAK 284 (359)
Q Consensus 208 e~a~~aGv~~V~i~~s~S~~~~~---~n~~~t~~e~l~~i~~~i~~Ak~~G~~V~~~is~~fg~~~~~r~~~e~l~~~a~ 284 (359)
++..++|++.+.- ...++|.. .++ ++....-++..++++.|+++|+++...+. ||-. =++++.++-+.
T Consensus 155 ~~LkeAGl~~~~g--~~aEi~~~~vr~~I-~p~k~~~~~~~~i~~~a~~~Gi~~~sg~l--~G~g----Et~edrv~hl~ 225 (353)
T PRK08444 155 EDMLEYGVDSMPG--GGAEIFDEEVRKKI-CKGKVSSERWLEIHKYWHKKGKMSNATML--FGHI----ENREHRIDHML 225 (353)
T ss_pred HHHHHhCcccCCC--CCchhcCHHHHhhh-CCCCCCHHHHHHHHHHHHHcCCCccceeE--EecC----CCHHHHHHHHH
Confidence 7778899986542 22333321 111 11112235667888999999999876665 6643 36777777777
Q ss_pred HHHHCCcCE------EEE----cCC----CCCCcHHHHHHHHHHHHHhCCCceEEEEeCCC-CCcHHHHHHHHHHcCCCE
Q 018252 285 ELHDMGCFE------ISL----GDT----IGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDT-YGQSLPNILISLQVSPMH 349 (359)
Q Consensus 285 ~l~~~Gad~------I~L----~DT----~G~~~P~~v~~lv~~l~~~~p~~~L~~H~HNd-~GLAlANalaAv~AGa~~ 349 (359)
.+.+...+. |-+ ..| ....+|.+.-++++..|=.+|++ =|..-. --++..-+..|+.+||+=
T Consensus 226 ~Lr~Lq~~t~gf~~fIp~~f~~~~t~l~~~~~~~~~e~Lr~iAi~Rl~L~~i---~ni~a~w~~~g~~~~q~~L~~Ga~D 302 (353)
T PRK08444 226 RLRDLQDKTGGFNAFIPLVYQRENNYLKVEKFPSSQEILKTIAISRILLDNI---PHIKAYWATLTLNLALVAQEFGAND 302 (353)
T ss_pred HHHHhccccCCceEEEecccCCCCCcCCCCCCCCHHHHHHHHHHHHHhcCCC---CccccccccCcHHHHHHHHhcCCcc
Confidence 777765542 333 344 22477888888887777666653 121111 125678889999999999
Q ss_pred Eeceee
Q 018252 350 AKPCFT 355 (359)
Q Consensus 350 ID~tl~ 355 (359)
+++|++
T Consensus 303 ~ggt~~ 308 (353)
T PRK08444 303 LDGTIE 308 (353)
T ss_pred Cccccc
Confidence 999974
No 75
>TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family. This model describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4.
Probab=97.52 E-value=0.014 Score=56.74 Aligned_cols=199 Identities=14% Similarity=0.100 Sum_probs=133.6
Q ss_pred ccCCCCC--CCCCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcCCCCCHHHHHHHhh---hcCCCeEEEEeC---ChHhH
Q 018252 136 DGLQNEK--NTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVR---DLEGARLPVLTP---NLKGF 207 (359)
Q Consensus 136 DG~Q~~~--~~~~~~~k~~ia~~L~~aGv~~IEvG~fvspk~vPq~~D~~ev~~~l~---~~~~~~l~~l~~---n~~gi 207 (359)
.+.+..+ +.+..+....++++-.+.+.+.|=-.+...-+. .+.+.+...++ +...+.+..... +.+.+
T Consensus 13 ~~~yAV~AfN~~n~e~~~avi~AAee~~sPvIlq~s~~~~~~----~~~~~~~~~~~~~a~~~~VPValHLDHg~~~e~i 88 (282)
T TIGR01858 13 AGGYAVPAFNIHNLETIQAVVETAAEMRSPVILAGTPGTFKH----AGTEYIVALCSAASTTYNMPLALHLDHHESLDDI 88 (282)
T ss_pred HcCCeEEEEEeCCHHHHHHHHHHHHHhCCCEEEEeCccHHhh----CCHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHH
Confidence 3444443 456789999999999999999985444222121 12233333333 223444544443 55789
Q ss_pred HHHHHcCCCEEEEecCCchHHHHhhhcCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCC--------CCCCHHHH
Q 018252 208 EAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVE--------GAIPPSKV 279 (359)
Q Consensus 208 e~a~~aGv~~V~i~~s~S~~~~~~n~~~t~~e~l~~i~~~i~~Ak~~G~~V~~~is~~fg~~~~--------~r~~~e~l 279 (359)
.+|+++|...|.+=.|. .+.+|+++.-++++++|+..|+.|.+.|-..=|.++. .-++|+..
T Consensus 89 ~~ai~~GFtSVM~DgS~----------lp~eeNi~~T~~vv~~Ah~~gv~VEaElG~vgg~e~~~~~~~~~~~~T~peea 158 (282)
T TIGR01858 89 RQKVHAGVRSAMIDGSH----------FPFAQNVKLVKEVVDFCHRQDCSVEAELGRLGGVEDDLSVDEEDALYTDPQEA 158 (282)
T ss_pred HHHHHcCCCEEeecCCC----------CCHHHHHHHHHHHHHHHHHcCCeEEEEEEecCCccCCCccccchhccCCHHHH
Confidence 99999999998874432 3468889999999999999999999888865344432 14688877
Q ss_pred HHHHHHHHHCCcCEEEE--cCCCCCC--cHHHHHHHHHHHHHhCCCceEEEEeCCCCCcHHHHHHHHHHcCCCEEecee
Q 018252 280 AYVAKELHDMGCFEISL--GDTIGVG--TPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQVSPMHAKPCF 354 (359)
Q Consensus 280 ~~~a~~l~~~Gad~I~L--~DT~G~~--~P~~v~~lv~~l~~~~p~~~L~~H~HNd~GLAlANalaAv~AGa~~ID~tl 354 (359)
.++++ +.|+|.+.+ .-.=|.- .|.-=.++++.+++.++ +||.+|+= -|+.--....|++.|+.-|+..-
T Consensus 159 ~~Fv~---~TgvD~LAvaiGt~HG~yk~~p~Ldf~~L~~I~~~~~-iPLVlHGg--SG~~~e~~~~ai~~Gi~KiNi~T 231 (282)
T TIGR01858 159 KEFVE---ATGVDSLAVAIGTAHGLYKKTPKLDFDRLAEIREVVD-VPLVLHGA--SDVPDEDVRRTIELGICKVNVAT 231 (282)
T ss_pred HHHHH---HHCcCEEecccCccccCcCCCCccCHHHHHHHHHHhC-CCeEEecC--CCCCHHHHHHHHHcCCeEEEeCc
Confidence 77755 568985433 2233322 25445577888888875 78988774 56667889999999999887653
No 76
>cd00947 TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) aldolase and related Type B Class II aldolases. TBP aldolase is a tetrameric class II aldolase that catalyzes the reversible condensation of dihydroxyacetone phosphate with glyceraldehyde 3-phsophate to produce tagatose 1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=97.51 E-value=0.021 Score=55.43 Aligned_cols=192 Identities=16% Similarity=0.150 Sum_probs=131.5
Q ss_pred CCCCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcCCCCCHHHHHHHhh---hcCCCeEEEEeC---ChHhHHHHHHcCCC
Q 018252 143 NTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVR---DLEGARLPVLTP---NLKGFEAAIAAGAK 216 (359)
Q Consensus 143 ~~~~~~~k~~ia~~L~~aGv~~IEvG~fvspk~vPq~~D~~ev~~~l~---~~~~~~l~~l~~---n~~gie~a~~aGv~ 216 (359)
+....+.-..++++-.+.+.+.|=-.+...-++ ...+.+...++ +...+.+..... +.+.+.+|+++|..
T Consensus 19 N~~n~e~~~avi~AAe~~~sPvIi~~~~~~~~~----~~~~~~~~~~~~~a~~~~VPV~lHLDH~~~~~~i~~ai~~Gft 94 (276)
T cd00947 19 NINNLETLKAILEAAEETRSPVILQISEGAIKY----AGLELLVAMVKAAAERASVPVALHLDHGSSFELIKRAIRAGFS 94 (276)
T ss_pred eeCCHHHHHHHHHHHHHhCCCEEEEcCcchhhh----CCHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHhCCC
Confidence 346678889999999999999874333221111 12222222332 223455555544 45789999999999
Q ss_pred EEEEecCCchHHHHhhhcCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCC------CCCCHHHHHHHHHHHHHCC
Q 018252 217 EVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVE------GAIPPSKVAYVAKELHDMG 290 (359)
Q Consensus 217 ~V~i~~s~S~~~~~~n~~~t~~e~l~~i~~~i~~Ak~~G~~V~~~is~~fg~~~~------~r~~~e~l~~~a~~l~~~G 290 (359)
.|.+=.|. .+.+|+++..++++++|+..|+.|.+.|-..=|.++. .-++|++..+++++ .|
T Consensus 95 SVMiD~S~----------l~~eeNi~~t~~vv~~ah~~gv~VEaElG~i~g~e~~~~~~~~~~T~pe~a~~Fv~~---Tg 161 (276)
T cd00947 95 SVMIDGSH----------LPFEENVAKTKEVVELAHAYGVSVEAELGRIGGEEDGVVGDEGLLTDPEEAEEFVEE---TG 161 (276)
T ss_pred EEEeCCCC----------CCHHHHHHHHHHHHHHHHHcCCeEEEEEeeecCccCCcccccccCCCHHHHHHHHHH---HC
Confidence 98884432 3468889999999999999999999888765444432 14688887777765 47
Q ss_pred cCEE--EEcCCCCCC---cHHHHHHHHHHHHHhCCCceEEEEeCCCCCcHHHHHHHHHHcCCCEEecee
Q 018252 291 CFEI--SLGDTIGVG---TPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQVSPMHAKPCF 354 (359)
Q Consensus 291 ad~I--~L~DT~G~~---~P~~v~~lv~~l~~~~p~~~L~~H~HNd~GLAlANalaAv~AGa~~ID~tl 354 (359)
+|.+ ++.-.=|.- .|.-=.++++.+++.++ +||.+|+= -|+.--....|++.|+.-|+...
T Consensus 162 vD~LAvsiGt~HG~Y~~~~p~L~~~~L~~i~~~~~-vPLVlHGg--SG~~~e~~~~ai~~Gi~KiNi~T 227 (276)
T cd00947 162 VDALAVAIGTSHGAYKGGEPKLDFDRLKEIAERVN-VPLVLHGG--SGIPDEQIRKAIKLGVCKININT 227 (276)
T ss_pred CCEEEeccCccccccCCCCCccCHHHHHHHHHHhC-CCEEEeCC--CCCCHHHHHHHHHcCCeEEEeCh
Confidence 8853 333343433 55555678888888875 78988874 47777889999999999887653
No 77
>PRK08610 fructose-bisphosphate aldolase; Reviewed
Probab=97.50 E-value=0.024 Score=55.35 Aligned_cols=193 Identities=16% Similarity=0.152 Sum_probs=130.3
Q ss_pred CCCCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcCCCCCHHHHHHHhh---hcCC--CeEEEEeC---ChHhHHHHHHcC
Q 018252 143 NTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVR---DLEG--ARLPVLTP---NLKGFEAAIAAG 214 (359)
Q Consensus 143 ~~~~~~~k~~ia~~L~~aGv~~IEvG~fvspk~vPq~~D~~ev~~~l~---~~~~--~~l~~l~~---n~~gie~a~~aG 214 (359)
+.+..+.-..++++-.+.+.+.|=-.+...-++ +...+.+...++ +... +.+..... +.+.+.+|+++|
T Consensus 24 N~~n~e~~~avi~AAee~~sPvIl~~~~~~~~~---~~~~~~~~~~~~~~A~~~~~~vPV~lHLDHg~~~e~i~~ai~~G 100 (286)
T PRK08610 24 NLNNLEFTQAILEASQEENAPVILGVSEGAARY---MSGFYTVVKMVEGLMHDLNITIPVAIHLDHGSSFEKCKEAIDAG 100 (286)
T ss_pred EECCHHHHHHHHHHHHHHCCCEEEEcCccHHhh---cCcHHHHHHHHHHHHHHcCCCCCEEEECCCCCCHHHHHHHHHcC
Confidence 456788899999999999999984443221111 112222223332 2222 44555443 567899999999
Q ss_pred CCEEEEecCCchHHHHhhhcCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCC---C---CCCHHHHHHHHHHHHH
Q 018252 215 AKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVE---G---AIPPSKVAYVAKELHD 288 (359)
Q Consensus 215 v~~V~i~~s~S~~~~~~n~~~t~~e~l~~i~~~i~~Ak~~G~~V~~~is~~fg~~~~---~---r~~~e~l~~~a~~l~~ 288 (359)
...|.+=.|. .+.+|+++.-++++++|+..|+.|.+.|-..=|.++. . -++|++..++++ +
T Consensus 101 ftSVM~DgS~----------l~~eeNi~~T~~vve~Ah~~gv~VEaElG~vgg~ed~~~~~~~~yT~peea~~Fv~---~ 167 (286)
T PRK08610 101 FTSVMIDASH----------SPFEENVATTKKVVEYAHEKGVSVEAELGTVGGQEDDVVADGIIYADPKECQELVE---K 167 (286)
T ss_pred CCEEEEeCCC----------CCHHHHHHHHHHHHHHHHHcCCEEEEEEeccCCccCCCCCcccccCCHHHHHHHHH---H
Confidence 9998884442 3468889999999999999999999888865344332 1 378888777775 5
Q ss_pred CCcCEEE--EcCCCCCC--cHHHHHHHHHHHHHhCCCceEEEEeCCCCCcHHHHHHHHHHcCCCEEecee
Q 018252 289 MGCFEIS--LGDTIGVG--TPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQVSPMHAKPCF 354 (359)
Q Consensus 289 ~Gad~I~--L~DT~G~~--~P~~v~~lv~~l~~~~p~~~L~~H~HNd~GLAlANalaAv~AGa~~ID~tl 354 (359)
.|+|.+- +.-.=|.- .|.-=-++++.+++.++ +||.+|+ .-|..--....|+..|+.-|+...
T Consensus 168 TgvD~LAvaiGt~HG~Y~~~p~Ld~~~L~~I~~~~~-vPLVLHG--gSG~~~e~~~~ai~~GI~KiNi~T 234 (286)
T PRK08610 168 TGIDALAPALGSVHGPYKGEPKLGFKEMEEIGLSTG-LPLVLHG--GTGIPTKDIQKAIPFGTAKINVNT 234 (286)
T ss_pred HCCCEEEeeccccccccCCCCCCCHHHHHHHHHHHC-CCEEEeC--CCCCCHHHHHHHHHCCCeEEEecc
Confidence 6888533 32233332 24434567777888774 7898877 478888899999999999887653
No 78
>PRK15108 biotin synthase; Provisional
Probab=97.49 E-value=0.046 Score=54.57 Aligned_cols=192 Identities=11% Similarity=0.037 Sum_probs=124.7
Q ss_pred CCCHHHHHHHHHHHHhCCCCEEEEecc-CCCCCcCCCCCHHHHHHHhhhc--CCCeEEEEe--CChHhHHHHHHcCCCEE
Q 018252 144 TVPTGVKVELIRRLVSSGLPVVEATSF-VSPKWVPQLADARDVMEAVRDL--EGARLPVLT--PNLKGFEAAIAAGAKEV 218 (359)
Q Consensus 144 ~~~~~~k~~ia~~L~~aGv~~IEvG~f-vspk~vPq~~D~~ev~~~l~~~--~~~~l~~l~--~n~~gie~a~~aGv~~V 218 (359)
.+++++.++.++.+.+.|++.|-+|.. ..| ...+.+.+.+.++.+ .++.+.+-. .+.+.+++..++|++.+
T Consensus 75 ~ls~eEI~~~a~~~~~~G~~~i~i~~~g~~p----~~~~~e~i~~~i~~ik~~~i~v~~s~G~ls~e~l~~LkeAGld~~ 150 (345)
T PRK15108 75 LMEVEQVLESARKAKAAGSTRFCMGAAWKNP----HERDMPYLEQMVQGVKAMGLETCMTLGTLSESQAQRLANAGLDYY 150 (345)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEEecCCCC----CcchHHHHHHHHHHHHhCCCEEEEeCCcCCHHHHHHHHHcCCCEE
Confidence 489999999999999999999966532 233 123344444444432 244433211 14578889999999999
Q ss_pred EEecCCchHHHHhhhcCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHHC--CcCEEEE
Q 018252 219 AIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDM--GCFEISL 296 (359)
Q Consensus 219 ~i~~s~S~~~~~~n~~~t~~e~l~~i~~~i~~Ak~~G~~V~~~is~~fg~~~~~r~~~e~l~~~a~~l~~~--Gad~I~L 296 (359)
++.+-+++.+-. ++.. ...++...+.++.|++.|+.+...+. ||. --++++.++.+..+.+. .++.|.+
T Consensus 151 n~~leT~p~~f~-~I~~--~~~~~~rl~~i~~a~~~G~~v~sg~i--~Gl----gEt~ed~v~~~~~l~~l~~~~~~ip~ 221 (345)
T PRK15108 151 NHNLDTSPEFYG-NIIT--TRTYQERLDTLEKVRDAGIKVCSGGI--VGL----GETVKDRAGLLLQLANLPTPPESVPI 221 (345)
T ss_pred eeccccChHhcC-CCCC--CCCHHHHHHHHHHHHHcCCceeeEEE--EeC----CCCHHHHHHHHHHHHhccCCCCEEEe
Confidence 998766654322 2211 12455566788889999998865554 664 12678888888888888 4555543
Q ss_pred ------cCC-C---CCCcHHHHHHHHHHHHHhCCCceEEEEe-CCCCCcHHHHHHHHHHcCCCEE
Q 018252 297 ------GDT-I---GVGTPGTVVPMLEAVMAVVPVEKLAVHL-HDTYGQSLPNILISLQVSPMHA 350 (359)
Q Consensus 297 ------~DT-~---G~~~P~~v~~lv~~l~~~~p~~~L~~H~-HNd~GLAlANalaAv~AGa~~I 350 (359)
..| . ..++|.+..+++...|=.+|+..+.+=. -.+.|- -....|+.+||+-+
T Consensus 222 ~~~~P~~gTpl~~~~~~~~~e~lr~iAi~Rl~lp~~~i~i~~g~~~~~~--~~~~~~l~~Gan~~ 284 (345)
T PRK15108 222 NMLVKVKGTPLADNDDVDAFDFIRTIAVARIMMPTSYVRLSAGREQMNE--QTQAMCFMAGANSI 284 (345)
T ss_pred CCccCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCceeeecccHhHhCh--hhHHHHHHcCCcEE
Confidence 345 2 2357889999999888888874333211 122322 34689999999987
No 79
>PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=97.49 E-value=0.017 Score=56.24 Aligned_cols=200 Identities=14% Similarity=0.108 Sum_probs=134.2
Q ss_pred cccCCCCC--CCCCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcCCCCCHHHHHHHhh---hcCCCeEEEEeC---ChHh
Q 018252 135 RDGLQNEK--NTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVR---DLEGARLPVLTP---NLKG 206 (359)
Q Consensus 135 RDG~Q~~~--~~~~~~~k~~ia~~L~~aGv~~IEvG~fvspk~vPq~~D~~ev~~~l~---~~~~~~l~~l~~---n~~g 206 (359)
|.+.+..+ +....+.-..++++-.+.+.+.|=-.+...-++. ..+.+...++ +...+.+..... +.+.
T Consensus 14 ~~~~yaV~AfN~~n~e~~~avi~AAee~~sPvIiq~~~~~~~~~----g~~~~~~~~~~~a~~~~VPValHLDH~~~~e~ 89 (284)
T PRK12737 14 QAEGYAVPAFNIHNLETLQVVVETAAELRSPVILAGTPGTFSYA----GTDYIVAIAEVAARKYNIPLALHLDHHEDLDD 89 (284)
T ss_pred HHcCceEEEEEeCCHHHHHHHHHHHHHhCCCEEEEcCccHHhhC----CHHHHHHHHHHHHHHCCCCEEEECCCCCCHHH
Confidence 44445543 4567899999999999999999744432221211 1222223222 223444544443 4578
Q ss_pred HHHHHHcCCCEEEEecCCchHHHHhhhcCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCC--------CCCCHHH
Q 018252 207 FEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVE--------GAIPPSK 278 (359)
Q Consensus 207 ie~a~~aGv~~V~i~~s~S~~~~~~n~~~t~~e~l~~i~~~i~~Ak~~G~~V~~~is~~fg~~~~--------~r~~~e~ 278 (359)
+.+|+++|...|.+=.| . ...+|+++.-++++++|+..|+.|.+.|-..=|.++. .-++|+.
T Consensus 90 i~~ai~~GftSVMiDgS--~--------lp~eeNi~~T~~vv~~Ah~~gvsVEaElG~igg~e~~~~~~~~~~~~T~pee 159 (284)
T PRK12737 90 IKKKVRAGIRSVMIDGS--H--------LSFEENIAIVKEVVEFCHRYDASVEAELGRLGGQEDDLVVDEKDAMYTNPDA 159 (284)
T ss_pred HHHHHHcCCCeEEecCC--C--------CCHHHHHHHHHHHHHHHHHcCCEEEEEEeeccCccCCcccccccccCCCHHH
Confidence 99999999998877433 1 3468889999999999999999999888865444442 1468888
Q ss_pred HHHHHHHHHHCCcCEEEE--cCCCCCC--cHHHHHHHHHHHHHhCCCceEEEEeCCCCCcHHHHHHHHHHcCCCEEecee
Q 018252 279 VAYVAKELHDMGCFEISL--GDTIGVG--TPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQVSPMHAKPCF 354 (359)
Q Consensus 279 l~~~a~~l~~~Gad~I~L--~DT~G~~--~P~~v~~lv~~l~~~~p~~~L~~H~HNd~GLAlANalaAv~AGa~~ID~tl 354 (359)
..+++++ .|+|.+.+ .-.=|.- .|.-=.++++.+++..+ +||.+|+ .-|..--....|++.|+.-|+..-
T Consensus 160 A~~Fv~~---TgvD~LAvaiGt~HG~y~~~p~Ld~~~L~~I~~~~~-iPLVlHG--gSG~~~e~~~kai~~Gi~KiNi~T 233 (284)
T PRK12737 160 AAEFVER---TGIDSLAVAIGTAHGLYKGEPKLDFERLAEIREKVS-IPLVLHG--ASGVPDEDVKKAISLGICKVNVAT 233 (284)
T ss_pred HHHHHHH---hCCCEEeeccCccccccCCCCcCCHHHHHHHHHHhC-CCEEEeC--CCCCCHHHHHHHHHCCCeEEEeCc
Confidence 7777765 58985433 2233332 35444567888888765 6888876 556777889999999999987653
No 80
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=97.48 E-value=0.057 Score=47.93 Aligned_cols=171 Identities=20% Similarity=0.172 Sum_probs=108.1
Q ss_pred CHHHHHHHHHHHHhCCCCEEEEeccCCCCCcCCCCCHHHHHHHhh-hcCC--CeEEEEe--CC----h----HhHHHHHH
Q 018252 146 PTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVR-DLEG--ARLPVLT--PN----L----KGFEAAIA 212 (359)
Q Consensus 146 ~~~~k~~ia~~L~~aGv~~IEvG~fvspk~vPq~~D~~ev~~~l~-~~~~--~~l~~l~--~n----~----~gie~a~~ 212 (359)
+.+.-.++++.|.+.|++.|++.. ++++.+. ..++ +.+.+-+ .+ . +.++.+.+
T Consensus 11 d~~~~~~~~~~~~~~gv~gi~~~g--------------~~i~~~~~~~~~~~~~v~~~v~~~~~~~~~~~~~~~a~~a~~ 76 (201)
T cd00945 11 TLEDIAKLCDEAIEYGFAAVCVNP--------------GYVRLAADALAGSDVPVIVVVGFPTGLTTTEVKVAEVEEAID 76 (201)
T ss_pred CHHHHHHHHHHHHHhCCcEEEECH--------------HHHHHHHHHhCCCCCeEEEEecCCCCCCcHHHHHHHHHHHHH
Confidence 778899999999999999999875 2233332 2333 4443333 22 2 45778888
Q ss_pred cCCCEEEEecCCchHHHHhhhcCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHHCCcC
Q 018252 213 AGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCF 292 (359)
Q Consensus 213 aGv~~V~i~~s~S~~~~~~n~~~t~~e~l~~i~~~i~~Ak~~G~~V~~~is~~fg~~~~~r~~~e~l~~~a~~l~~~Gad 292 (359)
+|++.+.+..+. +.. ...+.++.++.++++++.+ +.++.+..|.. |... .+++.+.++++.+.+.|++
T Consensus 77 ~Gad~i~v~~~~---~~~--~~~~~~~~~~~~~~i~~~~-~~~~pv~iy~~-----p~~~-~~~~~~~~~~~~~~~~g~~ 144 (201)
T cd00945 77 LGADEIDVVINI---GSL--KEGDWEEVLEEIAAVVEAA-DGGLPLKVILE-----TRGL-KTADEIAKAARIAAEAGAD 144 (201)
T ss_pred cCCCEEEEeccH---HHH--hCCCHHHHHHHHHHHHHHh-cCCceEEEEEE-----CCCC-CCHHHHHHHHHHHHHhCCC
Confidence 999998886542 111 1112456667777777766 56888876664 2222 4788899998888888998
Q ss_pred EEEEcCCCCCC----cHHHHHHHHHHHHHhCCCceEEEEeCCCCCcHHHHHHHHHHcCCCEE
Q 018252 293 EISLGDTIGVG----TPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQVSPMHA 350 (359)
Q Consensus 293 ~I~L~DT~G~~----~P~~v~~lv~~l~~~~p~~~L~~H~HNd~GLAlANalaAv~AGa~~I 350 (359)
.| +++.|.. ....+.++.+.+.. ..++.+-+-.+ ...+...++.+|++.+
T Consensus 145 ~i--K~~~~~~~~~~~~~~~~~i~~~~~~---~~~v~~~gg~~---~~~~~~~~~~~Ga~g~ 198 (201)
T cd00945 145 FI--KTSTGFGGGGATVEDVKLMKEAVGG---RVGVKAAGGIK---TLEDALAAIEAGADGI 198 (201)
T ss_pred EE--EeCCCCCCCCCCHHHHHHHHHhccc---CCcEEEECCCC---CHHHHHHHHHhcccee
Confidence 75 5666643 55555555443321 23444433222 3577888899998865
No 81
>PRK07709 fructose-bisphosphate aldolase; Provisional
Probab=97.47 E-value=0.038 Score=53.87 Aligned_cols=193 Identities=17% Similarity=0.162 Sum_probs=130.8
Q ss_pred CCCCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcCCCCCHHHHHHHhh---hcCC--CeEEEEeC---ChHhHHHHHHcC
Q 018252 143 NTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVR---DLEG--ARLPVLTP---NLKGFEAAIAAG 214 (359)
Q Consensus 143 ~~~~~~~k~~ia~~L~~aGv~~IEvG~fvspk~vPq~~D~~ev~~~l~---~~~~--~~l~~l~~---n~~gie~a~~aG 214 (359)
+.+..+.-..++++-.+.+-+.|=-.+...-+. +...+.+...++ +... +.+..... +.+.+.+|+++|
T Consensus 24 N~~n~e~~~avi~AAe~~~sPvIiq~~~~~~~~---~~~~~~~~~~~~~~a~~~~~~VPV~lHLDHg~~~e~i~~ai~~G 100 (285)
T PRK07709 24 NMNNLEWTQAILAAAEEEKSPVILGVSEGAARH---MTGFKTVVAMVKALIEEMNITVPVAIHLDHGSSFEKCKEAIDAG 100 (285)
T ss_pred EECCHHHHHHHHHHHHHHCCCEEEEcCcchhhh---cCCHHHHHHHHHHHHHHcCCCCcEEEECCCCCCHHHHHHHHHcC
Confidence 456788899999999999999985444322121 112222223332 2222 44555444 557889999999
Q ss_pred CCEEEEecCCchHHHHhhhcCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCC----C--CCCHHHHHHHHHHHHH
Q 018252 215 AKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVE----G--AIPPSKVAYVAKELHD 288 (359)
Q Consensus 215 v~~V~i~~s~S~~~~~~n~~~t~~e~l~~i~~~i~~Ak~~G~~V~~~is~~fg~~~~----~--r~~~e~l~~~a~~l~~ 288 (359)
...|.+=.|. .+.+|+++.-++++++|+..|+.|.+.|-..=|.++. . -++|++..+++++
T Consensus 101 ftSVM~DgS~----------lp~eeNi~~Trevv~~Ah~~gv~VEaElG~igg~ed~~~~~~~~yT~peeA~~Fv~~--- 167 (285)
T PRK07709 101 FTSVMIDASH----------HPFEENVETTKKVVEYAHARNVSVEAELGTVGGQEDDVIAEGVIYADPAECKHLVEA--- 167 (285)
T ss_pred CCEEEEeCCC----------CCHHHHHHHHHHHHHHHHHcCCEEEEEEeccCCccCCcccccccCCCHHHHHHHHHH---
Confidence 9998884432 3468889999999999999999999888865444432 1 3788887777764
Q ss_pred CCcCEEEE--cCCCCCC--cHHHHHHHHHHHHHhCCCceEEEEeCCCCCcHHHHHHHHHHcCCCEEecee
Q 018252 289 MGCFEISL--GDTIGVG--TPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQVSPMHAKPCF 354 (359)
Q Consensus 289 ~Gad~I~L--~DT~G~~--~P~~v~~lv~~l~~~~p~~~L~~H~HNd~GLAlANalaAv~AGa~~ID~tl 354 (359)
.|+|.+-+ .-.=|.- .|.-=.++++.+++.++ +||.+|+ .-|+.--....|++.|+.-|+...
T Consensus 168 TgvD~LAvaiGt~HG~Y~~~p~L~~~~L~~I~~~~~-iPLVLHG--gSG~~~e~~~~ai~~Gi~KiNi~T 234 (285)
T PRK07709 168 TGIDCLAPALGSVHGPYKGEPNLGFAEMEQVRDFTG-VPLVLHG--GTGIPTADIEKAISLGTSKINVNT 234 (285)
T ss_pred hCCCEEEEeecccccCcCCCCccCHHHHHHHHHHHC-CCEEEeC--CCCCCHHHHHHHHHcCCeEEEeCh
Confidence 48985433 3233332 25444467888888774 7898877 477888889999999999887643
No 82
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=97.46 E-value=0.012 Score=54.92 Aligned_cols=157 Identities=24% Similarity=0.245 Sum_probs=108.0
Q ss_pred CCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcCCCCCHHHHHHHhh-hcCCCeEE-EEeCChHhHHHHHHcCCCEEEEec
Q 018252 145 VPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVR-DLEGARLP-VLTPNLKGFEAAIAAGAKEVAIFA 222 (359)
Q Consensus 145 ~~~~~k~~ia~~L~~aGv~~IEvG~fvspk~vPq~~D~~ev~~~l~-~~~~~~l~-~l~~n~~gie~a~~aGv~~V~i~~ 222 (359)
.+.++-+++++.|.+.|++.||+++ ..| ++.+.++.++ +.++..+- +.+-+..+++.++++|.+-+-...
T Consensus 24 ~~~~~a~~i~~al~~~Gi~~iEitl-~~~-------~~~~~I~~l~~~~p~~~IGAGTVl~~~~a~~a~~aGA~FivsP~ 95 (212)
T PRK05718 24 NKLEDAVPLAKALVAGGLPVLEVTL-RTP-------AALEAIRLIAKEVPEALIGAGTVLNPEQLAQAIEAGAQFIVSPG 95 (212)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEec-CCc-------cHHHHHHHHHHHCCCCEEEEeeccCHHHHHHHHHcCCCEEECCC
Confidence 6789999999999999999999995 333 3445455554 45665553 334577999999999988654321
Q ss_pred CCchHHHHhhhcCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHHCCcCEEEEcCCCCC
Q 018252 223 SASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGV 302 (359)
Q Consensus 223 s~S~~~~~~n~~~t~~e~l~~i~~~i~~Ak~~G~~V~~~is~~fg~~~~~r~~~e~l~~~a~~l~~~Gad~I~L~DT~G~ 302 (359)
+ + .++++.|+++|+... -+-.+|.+ +..+.++|++.|.|-+
T Consensus 96 -----~-------~--------~~vi~~a~~~~i~~i-----------PG~~TptE----i~~a~~~Ga~~vKlFP---- 136 (212)
T PRK05718 96 -----L-------T--------PPLLKAAQEGPIPLI-----------PGVSTPSE----LMLGMELGLRTFKFFP---- 136 (212)
T ss_pred -----C-------C--------HHHHHHHHHcCCCEe-----------CCCCCHHH----HHHHHHCCCCEEEEcc----
Confidence 1 1 156788888888762 12346655 4557889999999944
Q ss_pred CcHHHH---HHHHHHHHHhCCCceEEEEeCCCCCcHHHHHHHHHHcC-CCEEeceee
Q 018252 303 GTPGTV---VPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQVS-PMHAKPCFT 355 (359)
Q Consensus 303 ~~P~~v---~~lv~~l~~~~p~~~L~~H~HNd~GLAlANalaAv~AG-a~~ID~tl~ 355 (359)
.+. -.+++.++.-+|++++.. +=|...-|.-.=+.+| +-.+-++.+
T Consensus 137 ---a~~~gg~~~lk~l~~p~p~~~~~p----tGGV~~~ni~~~l~ag~v~~vggs~L 186 (212)
T PRK05718 137 ---AEASGGVKMLKALAGPFPDVRFCP----TGGISPANYRDYLALPNVLCIGGSWM 186 (212)
T ss_pred ---chhccCHHHHHHHhccCCCCeEEE----eCCCCHHHHHHHHhCCCEEEEEChHh
Confidence 332 356777787788766664 4577778888888888 333334444
No 83
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=97.44 E-value=0.011 Score=56.80 Aligned_cols=149 Identities=20% Similarity=0.258 Sum_probs=90.6
Q ss_pred CCHHHHHHHHHHHHhCCCCEEEEecc-CCCCC-cCCCC-----------CHHHHHHHhhhc----CCCeEEEEe-CCh--
Q 018252 145 VPTGVKVELIRRLVSSGLPVVEATSF-VSPKW-VPQLA-----------DARDVMEAVRDL----EGARLPVLT-PNL-- 204 (359)
Q Consensus 145 ~~~~~k~~ia~~L~~aGv~~IEvG~f-vspk~-vPq~~-----------D~~ev~~~l~~~----~~~~l~~l~-~n~-- 204 (359)
-+.+.-.++++.|.+.|++.||+|+| ..|-+ .|... ..+.+++.++++ +++.+..++ -|.
T Consensus 23 P~~~~~~~~~~~l~~~Gad~iElGiPfSDP~aDGpvIq~a~~~AL~~G~~~~~~~~~~~~~r~~~~~~p~vlm~Y~N~i~ 102 (258)
T PRK13111 23 PDLETSLEIIKALVEAGADIIELGIPFSDPVADGPVIQAASLRALAAGVTLADVFELVREIREKDPTIPIVLMTYYNPIF 102 (258)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEECCCCCCCcccCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCEEEEecccHHh
Confidence 46788999999999999999999985 33321 01111 112344444432 345555444 243
Q ss_pred H-h----HHHHHHcCCCEEEEecCCchHHHHhhhcCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHH
Q 018252 205 K-G----FEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKV 279 (359)
Q Consensus 205 ~-g----ie~a~~aGv~~V~i~~s~S~~~~~~n~~~t~~e~l~~i~~~i~~Ak~~G~~V~~~is~~fg~~~~~r~~~e~l 279 (359)
. | ++.+.++|++-+.+.. .. ++...+.++.++++|+....-++ | .++++.+
T Consensus 103 ~~G~e~f~~~~~~aGvdGviipD------------Lp----~ee~~~~~~~~~~~gl~~I~lva-----p---~t~~eri 158 (258)
T PRK13111 103 QYGVERFAADAAEAGVDGLIIPD------------LP----PEEAEELRAAAKKHGLDLIFLVA-----P---TTTDERL 158 (258)
T ss_pred hcCHHHHHHHHHHcCCcEEEECC------------CC----HHHHHHHHHHHHHcCCcEEEEeC-----C---CCCHHHH
Confidence 1 3 6678889999988841 11 34567888999999998742221 1 2344444
Q ss_pred HHHHHHHHHCC-cCEEEEcCCCCC--CcHHHHHHHHHHHHHhC
Q 018252 280 AYVAKELHDMG-CFEISLGDTIGV--GTPGTVVPMLEAVMAVV 319 (359)
Q Consensus 280 ~~~a~~l~~~G-ad~I~L~DT~G~--~~P~~v~~lv~~l~~~~ 319 (359)
..+++. . -| ++.+.+.=+.|. ..|..+.++++.+++..
T Consensus 159 ~~i~~~-s-~gfIY~vs~~GvTG~~~~~~~~~~~~i~~vk~~~ 199 (258)
T PRK13111 159 KKIASH-A-SGFVYYVSRAGVTGARSADAADLAELVARLKAHT 199 (258)
T ss_pred HHHHHh-C-CCcEEEEeCCCCCCcccCCCccHHHHHHHHHhcC
Confidence 444443 1 12 233344444555 55788999999999965
No 84
>PRK09195 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=97.44 E-value=0.02 Score=55.82 Aligned_cols=199 Identities=14% Similarity=0.128 Sum_probs=133.4
Q ss_pred ccCCCCC--CCCCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcCCCCCHHHHHHHhh---hcCCCeEEEEeC---ChHhH
Q 018252 136 DGLQNEK--NTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVR---DLEGARLPVLTP---NLKGF 207 (359)
Q Consensus 136 DG~Q~~~--~~~~~~~k~~ia~~L~~aGv~~IEvG~fvspk~vPq~~D~~ev~~~l~---~~~~~~l~~l~~---n~~gi 207 (359)
.+.+..+ +....+.-..++++-.+.+-+.|=-.+...-+. ...+.+...++ +...+.+..... +.+.+
T Consensus 15 ~~~yaV~AfN~~n~e~~~avi~AAee~~sPvIiq~~~~~~~~----~g~~~~~~~~~~~A~~~~VPV~lHLDHg~~~e~i 90 (284)
T PRK09195 15 RGGYAVPAFNIHNLETMQVVVETAAELHSPVIIAGTPGTFSY----AGTEYLLAIVSAAAKQYHHPLALHLDHHEKFDDI 90 (284)
T ss_pred HcCceEEEEEeCCHHHHHHHHHHHHHhCCCEEEEcChhHHhh----CCHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHH
Confidence 3444443 456789999999999999999974433221111 12222222222 223444544443 45789
Q ss_pred HHHHHcCCCEEEEecCCchHHHHhhhcCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCC--------CCCCHHHH
Q 018252 208 EAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVE--------GAIPPSKV 279 (359)
Q Consensus 208 e~a~~aGv~~V~i~~s~S~~~~~~n~~~t~~e~l~~i~~~i~~Ak~~G~~V~~~is~~fg~~~~--------~r~~~e~l 279 (359)
++|+++|...|.+=.| ..+.+|+++.-++++++|+..|+.|.+-|-..=|.++. .-++|++.
T Consensus 91 ~~Ai~~GftSVM~DgS----------~l~~eeNi~~T~~vv~~Ah~~gv~VEaElG~vgg~e~~~~~~~~~~~~T~peea 160 (284)
T PRK09195 91 AQKVRSGVRSVMIDGS----------HLPFAQNISLVKEVVDFCHRFDVSVEAELGRLGGQEDDLQVDEADALYTDPAQA 160 (284)
T ss_pred HHHHHcCCCEEEeCCC----------CCCHHHHHHHHHHHHHHHHHcCCEEEEEEecccCcccCcccccccccCCCHHHH
Confidence 9999999998887433 23468889999999999999999999888765344332 13788887
Q ss_pred HHHHHHHHHCCcCEE--EEcCCCCCC--cHHHHHHHHHHHHHhCCCceEEEEeCCCCCcHHHHHHHHHHcCCCEEecee
Q 018252 280 AYVAKELHDMGCFEI--SLGDTIGVG--TPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQVSPMHAKPCF 354 (359)
Q Consensus 280 ~~~a~~l~~~Gad~I--~L~DT~G~~--~P~~v~~lv~~l~~~~p~~~L~~H~HNd~GLAlANalaAv~AGa~~ID~tl 354 (359)
.++++ +.|+|.+ .+.-.=|.- .|.-=.++++.+++.++ +||.+|+=. |..-.....|++.|+.-|+..-
T Consensus 161 ~~Fv~---~TgvD~LAvaiGt~HG~y~~~p~Ld~~~L~~I~~~~~-vPLVLHGgS--G~~~e~~~~ai~~Gi~KiNi~T 233 (284)
T PRK09195 161 REFVE---ATGIDSLAVAIGTAHGMYKGEPKLDFDRLENIRQWVN-IPLVLHGAS--GLPTKDIQQTIKLGICKVNVAT 233 (284)
T ss_pred HHHHH---HHCcCEEeeccCccccccCCCCcCCHHHHHHHHHHhC-CCeEEecCC--CCCHHHHHHHHHcCCeEEEeCc
Confidence 77776 5688853 333333442 35444567888888775 789888754 7778899999999999987643
No 85
>PRK09240 thiH thiamine biosynthesis protein ThiH; Reviewed
Probab=97.42 E-value=0.019 Score=57.84 Aligned_cols=172 Identities=12% Similarity=0.062 Sum_probs=112.4
Q ss_pred CCCCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcCCCCCHHHHHHHhhh----cCCCeEEEEeCChHhHHHHHHcCCCEE
Q 018252 143 NTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRD----LEGARLPVLTPNLKGFEAAIAAGAKEV 218 (359)
Q Consensus 143 ~~~~~~~k~~ia~~L~~aGv~~IEvG~fvspk~vPq~~D~~ev~~~l~~----~~~~~l~~l~~n~~gie~a~~aGv~~V 218 (359)
..++.++.++.++.+.+.|++.|-+...-.|. ..+.+.+.+.++. .+.+.+.+..-+.++++...++|++++
T Consensus 102 ~~ls~eEI~~~a~~~~~~Gv~~i~lvgGe~p~----~~~~e~l~~~i~~Ik~~~p~i~i~~g~lt~e~l~~Lk~aGv~r~ 177 (371)
T PRK09240 102 KTLDEEEIEREMAAIKKLGFEHILLLTGEHEA----KVGVDYIRRALPIAREYFSSVSIEVQPLSEEEYAELVELGLDGV 177 (371)
T ss_pred ccCCHHHHHHHHHHHHhCCCCEEEEeeCCCCC----CCCHHHHHHHHHHHHHhCCCceeccCCCCHHHHHHHHHcCCCEE
Confidence 56899999999999999999999775433332 2355555555553 344444333336678999999999999
Q ss_pred EEecCCc-hHHHHhhh---c--CCHHHHHHHHHHHHHHHHhCCCc-EEEEEeeeecCCCCCCCCHHHHHHHHHHHHHCCc
Q 018252 219 AIFASAS-EAFSKSNI---N--CSIEDSLVRYRAVAHAAKVLSIP-VRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGC 291 (359)
Q Consensus 219 ~i~~s~S-~~~~~~n~---~--~t~~e~l~~i~~~i~~Ak~~G~~-V~~~is~~fg~~~~~r~~~e~l~~~a~~l~~~Ga 291 (359)
++..-+. +.+ ..++ | .+.++ ..+.++.|+++|++ |...+. +|.+. +.++..+++..+.++++
T Consensus 178 ~i~lET~~~~~-~~~i~~~g~~h~~~~----rl~~i~~a~~aG~~~v~~g~i--~Glge----~~~d~~~~a~~l~~L~~ 246 (371)
T PRK09240 178 TVYQETYNPAT-YAKHHLRGPKRDFEY----RLETPERAGRAGIRKIGLGAL--LGLSD----WRTDALMTALHLRYLQR 246 (371)
T ss_pred EEEEecCCHHH-HHHhCcCCCCCCHHH----HHHHHHHHHHcCCCeeceEEE--ecCCc----cHHHHHHHHHHHHHHHH
Confidence 9987663 433 2233 2 24444 44678888999996 654444 65432 45666676765555543
Q ss_pred C------EEE---EcCCCC------CCcHHHHHHHHHHHHHhCCCceEEEEeC
Q 018252 292 F------EIS---LGDTIG------VGTPGTVVPMLEAVMAVVPVEKLAVHLH 329 (359)
Q Consensus 292 d------~I~---L~DT~G------~~~P~~v~~lv~~l~~~~p~~~L~~H~H 329 (359)
+ .|. |-..-| ..+|.++.+++..+|-.+|...|-+=+-
T Consensus 247 ~~~~~~~sv~~~~l~P~~g~~~~~~~~~~~e~l~~ia~~Rl~lP~~~i~~s~g 299 (371)
T PRK09240 247 KYWQAEYSISFPRLRPCTGGIEPASIVSDKQLVQLICAFRLFLPDVEISLSTR 299 (371)
T ss_pred hCCCCceeeecCccccCCCCCCCCCCCCHHHHHHHHHHHHHHCcccccEEecC
Confidence 2 343 444444 2578899999999998889766665443
No 86
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=97.40 E-value=0.019 Score=52.01 Aligned_cols=166 Identities=19% Similarity=0.155 Sum_probs=104.0
Q ss_pred CCCHHHHHHHHHHHHhCCCCEEEEecc-CCCCCcCCCCCHHHHHHHhhh-cCCCeEEEEe--CCh--HhHHHHHHcCCCE
Q 018252 144 TVPTGVKVELIRRLVSSGLPVVEATSF-VSPKWVPQLADARDVMEAVRD-LEGARLPVLT--PNL--KGFEAAIAAGAKE 217 (359)
Q Consensus 144 ~~~~~~k~~ia~~L~~aGv~~IEvG~f-vspk~vPq~~D~~ev~~~l~~-~~~~~l~~l~--~n~--~gie~a~~aGv~~ 217 (359)
..+.++-.++++.|.+. ++.||+|.. ..+ ...+.++.+++ .++..+.+.. -+. ..++.+.++|++.
T Consensus 9 ~~~~~~~~~~~~~l~~~-i~~ieig~~~~~~-------~g~~~i~~i~~~~~~~~i~~~~~v~~~~~~~~~~~~~aGad~ 80 (202)
T cd04726 9 LLDLEEALELAKKVPDG-VDIIEAGTPLIKS-------EGMEAVRALREAFPDKIIVADLKTADAGALEAEMAFKAGADI 80 (202)
T ss_pred CCCHHHHHHHHHHhhhc-CCEEEcCCHHHHH-------hCHHHHHHHHHHCCCCEEEEEEEeccccHHHHHHHHhcCCCE
Confidence 36788999999999999 999999952 211 11234455554 3565554432 122 3578899999998
Q ss_pred EEEecCCchHHHHhhhcCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHHCCcCEEEE-
Q 018252 218 VAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISL- 296 (359)
Q Consensus 218 V~i~~s~S~~~~~~n~~~t~~e~l~~i~~~i~~Ak~~G~~V~~~is~~fg~~~~~r~~~e~l~~~a~~l~~~Gad~I~L- 296 (359)
+.+.....+ +.+.+++++++++|+++.+.+. +..+++++. + +...|+|.+.+
T Consensus 81 i~~h~~~~~---------------~~~~~~i~~~~~~g~~~~v~~~--------~~~t~~e~~---~-~~~~~~d~v~~~ 133 (202)
T cd04726 81 VTVLGAAPL---------------STIKKAVKAAKKYGKEVQVDLI--------GVEDPEKRA---K-LLKLGVDIVILH 133 (202)
T ss_pred EEEEeeCCH---------------HHHHHHHHHHHHcCCeEEEEEe--------CCCCHHHHH---H-HHHCCCCEEEEc
Confidence 877543211 2245678888999998744322 234565544 3 56679998777
Q ss_pred c----CCCCCCcHHHHHHHHHHHHHhCCCceEEEEeCCCCCcHHHHHHHHHHcCCCEEec
Q 018252 297 G----DTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQVSPMHAKP 352 (359)
Q Consensus 297 ~----DT~G~~~P~~v~~lv~~l~~~~p~~~L~~H~HNd~GLAlANalaAv~AGa~~ID~ 352 (359)
. .+.| +....+.++.+++. +++++.+=+ |-...|+..++++||+.+=+
T Consensus 134 ~~~~~~~~~---~~~~~~~i~~~~~~-~~~~i~~~G----GI~~~~i~~~~~~Gad~vvv 185 (202)
T cd04726 134 RGIDAQAAG---GWWPEDDLKKVKKL-LGVKVAVAG----GITPDTLPEFKKAGADIVIV 185 (202)
T ss_pred CcccccccC---CCCCHHHHHHHHhh-cCCCEEEEC----CcCHHHHHHHHhcCCCEEEE
Confidence 2 2332 22333445555543 345565544 55668999999999997644
No 87
>PRK05835 fructose-bisphosphate aldolase; Provisional
Probab=97.38 E-value=0.043 Score=54.08 Aligned_cols=193 Identities=16% Similarity=0.128 Sum_probs=130.6
Q ss_pred CCCCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcCCCCCHHHHHHHhh---h-cCCCeEEEEeC---ChHhHHHHHHcCC
Q 018252 143 NTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVR---D-LEGARLPVLTP---NLKGFEAAIAAGA 215 (359)
Q Consensus 143 ~~~~~~~k~~ia~~L~~aGv~~IEvG~fvspk~vPq~~D~~ev~~~l~---~-~~~~~l~~l~~---n~~gie~a~~aGv 215 (359)
+....+.-..++++-.+.+.+.|=-.+...-++ ...+.+...++ + .+.+.+..... +.+.+.+|+++|.
T Consensus 23 N~~n~e~~~avi~AAe~~~sPvIlq~s~~~~~~----~g~~~~~~~~~~~a~~~~~VPValHLDHg~~~e~i~~ai~~Gf 98 (307)
T PRK05835 23 NFVNFEMLNAIFEAGNEENSPLFIQASEGAIKY----MGIDMAVGMVKIMCERYPHIPVALHLDHGTTFESCEKAVKAGF 98 (307)
T ss_pred EECCHHHHHHHHHHHHHHCCCEEEEcCccHHhh----CChHHHHHHHHHHHHhcCCCeEEEECCCCCCHHHHHHHHHcCC
Confidence 456788999999999999999985544322221 12222222222 2 22355555554 5578899999999
Q ss_pred CEEEEecCCchHHHHhhhcCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCC----C----CCCHHHHHHHHHHHH
Q 018252 216 KEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVE----G----AIPPSKVAYVAKELH 287 (359)
Q Consensus 216 ~~V~i~~s~S~~~~~~n~~~t~~e~l~~i~~~i~~Ak~~G~~V~~~is~~fg~~~~----~----r~~~e~l~~~a~~l~ 287 (359)
..|.+=.| ..+.+|+++.-++++++|+..|+.|.+.|-..=|.++. . -++|+...++++
T Consensus 99 tSVM~DgS----------~l~~eeNi~~T~~vve~Ah~~gv~VEaElG~vgg~ed~~~~~~~~~~~TdPeeA~~Fv~--- 165 (307)
T PRK05835 99 TSVMIDAS----------HHAFEENLELTSKVVKMAHNAGVSVEAELGRLMGIEDNISVDEKDAVLVNPKEAEQFVK--- 165 (307)
T ss_pred CEEEEeCC----------CCCHHHHHHHHHHHHHHHHHcCCEEEEEecccCCccCCcccccccccCCCHHHHHHHHH---
Confidence 99888443 23457889999999999999999999888764344432 1 467877666665
Q ss_pred HCCcCE--EEEcCCCCCC----cHHHHHHHHHHHHHhCCCceEEEEeCCCC-------------------CcHHHHHHHH
Q 018252 288 DMGCFE--ISLGDTIGVG----TPGTVVPMLEAVMAVVPVEKLAVHLHDTY-------------------GQSLPNILIS 342 (359)
Q Consensus 288 ~~Gad~--I~L~DT~G~~----~P~~v~~lv~~l~~~~p~~~L~~H~HNd~-------------------GLAlANalaA 342 (359)
+.|+|. |.+.-+=|.- .|.-=-++++.+++.++ +||.+|+=... |-.+-....|
T Consensus 166 ~TgvD~LAvaiGt~HG~Yk~~~~p~L~f~~L~~I~~~~~-iPLVLHGgSGip~e~~~~~~~~g~~~~~~~g~~~e~~~ka 244 (307)
T PRK05835 166 ESQVDYLAPAIGTSHGAFKFKGEPKLDFERLQEVKRLTN-IPLVLHGASAIPDDVRKSYLDAGGDLKGSKGVPFEFLQES 244 (307)
T ss_pred hhCCCEEEEccCccccccCCCCCCccCHHHHHHHHHHhC-CCEEEeCCCCCchHHhhhhhhhccccccccCCCHHHHHHH
Confidence 458985 3444444443 24555578888888874 79999985543 3335588999
Q ss_pred HHcCCCEEece
Q 018252 343 LQVSPMHAKPC 353 (359)
Q Consensus 343 v~AGa~~ID~t 353 (359)
++.|+.-|+..
T Consensus 245 i~~GI~KiNi~ 255 (307)
T PRK05835 245 VKGGINKVNTD 255 (307)
T ss_pred HHcCceEEEeC
Confidence 99999988754
No 88
>TIGR00167 cbbA ketose-bisphosphate aldolases. fructose-bisphosphate and tagatose-bisphosphate aldolase.
Probab=97.37 E-value=0.044 Score=53.55 Aligned_cols=193 Identities=17% Similarity=0.149 Sum_probs=130.1
Q ss_pred CCCCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcCCCCCHHHHHHHhh---hcC--CCeEEEEeC---ChHhHHHHHHcC
Q 018252 143 NTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVR---DLE--GARLPVLTP---NLKGFEAAIAAG 214 (359)
Q Consensus 143 ~~~~~~~k~~ia~~L~~aGv~~IEvG~fvspk~vPq~~D~~ev~~~l~---~~~--~~~l~~l~~---n~~gie~a~~aG 214 (359)
+.+..+.-..++++-.+.+-+.|=-.+...-+. +...+.+...++ +.. .+.+..... +.+.+.+|+++|
T Consensus 24 N~~n~e~~~avi~AAee~~sPvIlq~~~~~~~~---~~g~~~~~~~~~~~a~~~~~~VPV~lHLDHg~~~e~i~~ai~~G 100 (288)
T TIGR00167 24 NINNLETINAVLEAAAEEKSPVIIQFSNGAAKY---IAGLGAISAMVKAMSEAYPYGVPVALHLDHGASEEDCAQAVKAG 100 (288)
T ss_pred EECCHHHHHHHHHHHHHHCCCEEEECCcchhhc---cCCHHHHHHHHHHHHHhccCCCcEEEECCCCCCHHHHHHHHHcC
Confidence 456788899999999999999984443222221 112233333332 223 445555443 557899999999
Q ss_pred CCEEEEecCCchHHHHhhhcCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCC--------CCCCHHHHHHHHHHH
Q 018252 215 AKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVE--------GAIPPSKVAYVAKEL 286 (359)
Q Consensus 215 v~~V~i~~s~S~~~~~~n~~~t~~e~l~~i~~~i~~Ak~~G~~V~~~is~~fg~~~~--------~r~~~e~l~~~a~~l 286 (359)
...|.+=.|. .+.+|+++.-++++++|+..|+.|.+.|-..=|.++. .-++|++..++++
T Consensus 101 ftSVMiDgS~----------lp~eeNi~~T~~vv~~Ah~~gv~VEaElG~vgg~e~~~~~~~~~~~~T~peea~~Fv~-- 168 (288)
T TIGR00167 101 FSSVMIDGSH----------EPFEENIELTKKVVERAHKMGVSVEAELGTLGGEEDGVSVADESALYTDPEEAKEFVK-- 168 (288)
T ss_pred CCEEEecCCC----------CCHHHHHHHHHHHHHHHHHcCCEEEEEEeeccCccCCcccccccccCCCHHHHHHHHh--
Confidence 9998874432 3468889999999999999999999888865444432 1467876655553
Q ss_pred HHCCcCEEE--EcCCCCCC--cHH-HHHHHHHHHHHhCCCceEEEEeCCCCCcHHHHHHHHHHcCCCEEecee
Q 018252 287 HDMGCFEIS--LGDTIGVG--TPG-TVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQVSPMHAKPCF 354 (359)
Q Consensus 287 ~~~Gad~I~--L~DT~G~~--~P~-~v~~lv~~l~~~~p~~~L~~H~HNd~GLAlANalaAv~AGa~~ID~tl 354 (359)
+.|+|.+. +.-.=|.- .|. -=.++++.+++.++ +||.+|+= -|+.-.....|++.|+.-|+...
T Consensus 169 -~TgvD~LAvaiGt~HG~y~~~p~~Ld~~~L~~I~~~v~-vPLVlHGg--SG~~~e~~~~ai~~Gi~KiNi~T 237 (288)
T TIGR00167 169 -LTGVDSLAAAIGNVHGVYKGEPKGLDFERLEEIQKYVN-LPLVLHGG--SGIPDEEIKKAISLGVVKVNIDT 237 (288)
T ss_pred -ccCCcEEeeccCccccccCCCCCccCHHHHHHHHHHhC-CCEEEeCC--CCCCHHHHHHHHHcCCeEEEcCh
Confidence 46888644 33333433 354 23457778888775 78998875 47777889999999999988654
No 89
>PRK12857 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=97.34 E-value=0.053 Score=52.89 Aligned_cols=192 Identities=15% Similarity=0.163 Sum_probs=130.4
Q ss_pred CCCCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcCCCCCHHHHHHHhh---hcCCCeEEEEeC---ChHhHHHHHHcCCC
Q 018252 143 NTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVR---DLEGARLPVLTP---NLKGFEAAIAAGAK 216 (359)
Q Consensus 143 ~~~~~~~k~~ia~~L~~aGv~~IEvG~fvspk~vPq~~D~~ev~~~l~---~~~~~~l~~l~~---n~~gie~a~~aGv~ 216 (359)
+.+..+.-..++++-.+.+-+.|=-.+...-++ ...+.+...++ +...+.+..... +.+.+.+|+++|..
T Consensus 24 Nv~n~e~~~avi~AAee~~sPvIlq~~~~~~~~----~g~~~~~~~~~~~A~~~~VPValHLDH~~~~e~i~~ai~~Gft 99 (284)
T PRK12857 24 NCNNMEIVQAIVAAAEAEKSPVIIQASQGAIKY----AGIEYISAMVRTAAEKASVPVALHLDHGTDFEQVMKCIRNGFT 99 (284)
T ss_pred EeCCHHHHHHHHHHHHHhCCCEEEEechhHhhh----CCHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHcCCC
Confidence 456788889999999999999985444322121 12222222222 223444544443 45789999999999
Q ss_pred EEEEecCCchHHHHhhhcCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCC----C----CCCHHHHHHHHHHHHH
Q 018252 217 EVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVE----G----AIPPSKVAYVAKELHD 288 (359)
Q Consensus 217 ~V~i~~s~S~~~~~~n~~~t~~e~l~~i~~~i~~Ak~~G~~V~~~is~~fg~~~~----~----r~~~e~l~~~a~~l~~ 288 (359)
.|.+=.|. .+.+|+++.-++++++|+..|+.|.+.|-..=|.++. . -++|+...++++ +
T Consensus 100 SVM~DgS~----------lp~eeNi~~T~~vv~~Ah~~gvsVEaElG~vgg~e~~~~~~~~~~~~T~pe~a~~Fv~---~ 166 (284)
T PRK12857 100 SVMIDGSK----------LPLEENIALTKKVVEIAHAVGVSVEAELGKIGGTEDDITVDEREAAMTDPEEARRFVE---E 166 (284)
T ss_pred eEEEeCCC----------CCHHHHHHHHHHHHHHHHHcCCEEEEEeeecCCccCCCCcccchhhcCCHHHHHHHHH---H
Confidence 88874432 2468899999999999999999999888764344332 1 368888777765 4
Q ss_pred CCcCEEEE--cCCCCCC--cHHHHHHHHHHHHHhCCCceEEEEeCCCCCcHHHHHHHHHHcCCCEEecee
Q 018252 289 MGCFEISL--GDTIGVG--TPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQVSPMHAKPCF 354 (359)
Q Consensus 289 ~Gad~I~L--~DT~G~~--~P~~v~~lv~~l~~~~p~~~L~~H~HNd~GLAlANalaAv~AGa~~ID~tl 354 (359)
.|+|.+.+ .-.=|.- .|.-=.++++.+++.++ +||.+|+= -|+.-.....|++.|+.-|+...
T Consensus 167 TgvD~LAvaiGt~HG~y~~~p~Ld~~~L~~i~~~~~-vPLVlHGg--SG~~~e~~~~ai~~Gi~KiNi~T 233 (284)
T PRK12857 167 TGVDALAIAIGTAHGPYKGEPKLDFDRLAKIKELVN-IPIVLHGS--SGVPDEAIRKAISLGVRKVNIDT 233 (284)
T ss_pred HCCCEEeeccCccccccCCCCcCCHHHHHHHHHHhC-CCEEEeCC--CCCCHHHHHHHHHcCCeEEEeCc
Confidence 48885333 3333332 36555678888888875 68888774 47888899999999999887653
No 90
>PRK12738 kbaY tagatose-bisphosphate aldolase; Reviewed
Probab=97.34 E-value=0.061 Score=52.51 Aligned_cols=191 Identities=13% Similarity=0.118 Sum_probs=130.4
Q ss_pred CCCCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcCCCCCHHHHHHHhh---hcCCCeEEEEeC---ChHhHHHHHHcCCC
Q 018252 143 NTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVR---DLEGARLPVLTP---NLKGFEAAIAAGAK 216 (359)
Q Consensus 143 ~~~~~~~k~~ia~~L~~aGv~~IEvG~fvspk~vPq~~D~~ev~~~l~---~~~~~~l~~l~~---n~~gie~a~~aGv~ 216 (359)
+.+..+....++++-.+.+-+.|=-.+...-+. ...+.+...++ +...+.+..... +.+.+.+|+++|..
T Consensus 24 N~~n~e~~~avi~AAee~~sPvIlq~s~~~~~~----~~~~~~~~~~~~~a~~~~VPValHLDHg~~~e~i~~ai~~GFt 99 (286)
T PRK12738 24 NIHNAETIQAILEVCSEMRSPVILAGTPGTFKH----IALEEIYALCSAYSTTYNMPLALHLDHHESLDDIRRKVHAGVR 99 (286)
T ss_pred EeCCHHHHHHHHHHHHHHCCCEEEEcCcchhhh----CCHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHcCCC
Confidence 456788999999999999999985443221111 12222223332 223455555554 55788999999999
Q ss_pred EEEEecCCchHHHHhhhcCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCC----C----CCCHHHHHHHHHHHHH
Q 018252 217 EVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVE----G----AIPPSKVAYVAKELHD 288 (359)
Q Consensus 217 ~V~i~~s~S~~~~~~n~~~t~~e~l~~i~~~i~~Ak~~G~~V~~~is~~fg~~~~----~----r~~~e~l~~~a~~l~~ 288 (359)
.|.+=.| ..+.+|+++.-++++++|+.+|+.|.+.|-..=|.++. . -++|+...++++ +
T Consensus 100 SVM~DgS----------~lp~eeNi~~T~evv~~Ah~~gv~VEaElG~igg~ed~~~~~~~~~~~T~peea~~Fv~---~ 166 (286)
T PRK12738 100 SAMIDGS----------HFPFAENVKLVKSVVDFCHSQDCSVEAELGRLGGVEDDMSVDAESAFLTDPQEAKRFVE---L 166 (286)
T ss_pred eEeecCC----------CCCHHHHHHHHHHHHHHHHHcCCeEEEEEEeeCCccCCcccccchhcCCCHHHHHHHHH---H
Confidence 8887433 13468889999999999999999999888865344432 1 468888777765 3
Q ss_pred CCcCEEEE--cCCCCCC--cHHHHHHHHHHHHHhCCCceEEEEeCCCCCcHHHHHHHHHHcCCCEEece
Q 018252 289 MGCFEISL--GDTIGVG--TPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQVSPMHAKPC 353 (359)
Q Consensus 289 ~Gad~I~L--~DT~G~~--~P~~v~~lv~~l~~~~p~~~L~~H~HNd~GLAlANalaAv~AGa~~ID~t 353 (359)
.|+|.+.+ .-.=|.- .|.-=.++++.+++.++ +||.+|+= -|..--+...|++.|+.-|+..
T Consensus 167 TgvD~LAvaiGt~HG~Y~~~p~Ldfd~l~~I~~~~~-vPLVLHGg--SG~~~e~~~kai~~GI~KiNi~ 232 (286)
T PRK12738 167 TGVDSLAVAIGTAHGLYSKTPKIDFQRLAEIREVVD-VPLVLHGA--SDVPDEFVRRTIELGVTKVNVA 232 (286)
T ss_pred hCCCEEEeccCcccCCCCCCCcCCHHHHHHHHHHhC-CCEEEeCC--CCCCHHHHHHHHHcCCeEEEeC
Confidence 48885333 3233332 36556678888888875 78988875 4555788999999999988764
No 91
>PTZ00413 lipoate synthase; Provisional
Probab=97.32 E-value=0.022 Score=57.57 Aligned_cols=177 Identities=16% Similarity=0.204 Sum_probs=119.5
Q ss_pred CCCCCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcCCCCCHHHH---HHHhhh-cCCCeEEEEeC----ChHhHHHHHHc
Q 018252 142 KNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDV---MEAVRD-LEGARLPVLTP----NLKGFEAAIAA 213 (359)
Q Consensus 142 ~~~~~~~~k~~ia~~L~~aGv~~IEvG~fvspk~vPq~~D~~ev---~~~l~~-~~~~~l~~l~~----n~~gie~a~~a 213 (359)
...+++++-.++|+...+.|++++-|++...++. |. .+++.+ .+.+++ .+++.+-++++ +.+.++...++
T Consensus 174 p~~lD~eEp~~vA~av~~~Gl~~~VVTSv~RDDL-~D-~ga~~~a~~I~~Ir~~~p~~~IevligDf~g~~e~l~~L~eA 251 (398)
T PTZ00413 174 PPPLDPNEPEKVAKAVAEMGVDYIVMTMVDRDDL-PD-GGASHVARCVELIKESNPELLLEALVGDFHGDLKSVEKLANS 251 (398)
T ss_pred CCCCCHHHHHHHHHHHHHcCCCEEEEEEEcCCCC-Ch-hhHHHHHHHHHHHHccCCCCeEEEcCCccccCHHHHHHHHhc
Confidence 3568999999999999999999998888544221 11 223334 444444 47889999988 45678899999
Q ss_pred CCCEEEEecCCchHHHH-hhh-cCCHHHHHHHHHHHHHHHHhC---CCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHH
Q 018252 214 GAKEVAIFASASEAFSK-SNI-NCSIEDSLVRYRAVAHAAKVL---SIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHD 288 (359)
Q Consensus 214 Gv~~V~i~~s~S~~~~~-~n~-~~t~~e~l~~i~~~i~~Ak~~---G~~V~~~is~~fg~~~~~r~~~e~l~~~a~~l~~ 288 (359)
|++.++-=+-+++.+-. ..- +.+.++.++ +++.||+. |+.+.-.++ +|. |. +.++++++++.+.+
T Consensus 252 G~dvynHNLETv~rLyp~VRt~~atYe~sLe----~Lr~AKe~f~~gi~tcSGiI--VGL---GE-T~eEvie~m~dLre 321 (398)
T PTZ00413 252 PLSVYAHNIECVERITPYVRDRRASYRQSLK----VLEHVKEFTNGAMLTKSSIM--LGL---GE-TEEEVRQTLRDLRT 321 (398)
T ss_pred CCCEEecccccCHhHHHHHccCcCCHHHHHH----HHHHHHHHhcCCceEeeeeE--ecC---CC-CHHHHHHHHHHHHH
Confidence 99998876666655443 221 246666664 45556655 777766665 552 12 66889999999999
Q ss_pred CCcCEEEEcC----------CCCCCcHHHHHHHHHHHHHh-C------CCceEEEEeCC
Q 018252 289 MGCFEISLGD----------TIGVGTPGTVVPMLEAVMAV-V------PVEKLAVHLHD 330 (359)
Q Consensus 289 ~Gad~I~L~D----------T~G~~~P~~v~~lv~~l~~~-~------p~~~L~~H~HN 330 (359)
.|+|.+.|.- -.-+.+|+++..+=+.-.+. | |-+.=++|...
T Consensus 322 lGVDivtIGQYL~Ps~~h~~V~~yv~P~~F~~~~~~a~~~Gf~~v~sgPlVRSSY~A~e 380 (398)
T PTZ00413 322 AGVSAVTLGQYLQPTKTRLKVSRYAHPKEFEMWEEEAMKMGFLYCASGPLVRSSYRAGE 380 (398)
T ss_pred cCCcEEeeccccCCCcccCCceeccCHHHHHHHHHHHHHcCCceEEecCccccchhccH
Confidence 9999988843 23455688887776544431 2 44556677665
No 92
>PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed
Probab=97.31 E-value=0.038 Score=53.86 Aligned_cols=191 Identities=18% Similarity=0.283 Sum_probs=128.1
Q ss_pred CCCCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcCCCCCHHHHHHHhh---hcCCCeEEEEeC---ChHhHHHHHHcCCC
Q 018252 143 NTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVR---DLEGARLPVLTP---NLKGFEAAIAAGAK 216 (359)
Q Consensus 143 ~~~~~~~k~~ia~~L~~aGv~~IEvG~fvspk~vPq~~D~~ev~~~l~---~~~~~~l~~l~~---n~~gie~a~~aGv~ 216 (359)
+....+.-..++++-.+.+-+.|=-.+...-+. ...+.+...++ +...+.+..... +.+.+.+|+++|.+
T Consensus 24 N~~n~e~~~avi~AAe~~~sPvIl~~~~~~~~~----~g~~~~~~~~~~~A~~~~vPV~lHLDH~~~~e~i~~Ai~~Gft 99 (283)
T PRK07998 24 NTTNLETTISILNAIERSGLPNFIQIAPTNAQL----SGYDYIYEIVKRHADKMDVPVSLHLDHGKTFEDVKQAVRAGFT 99 (283)
T ss_pred eeCCHHHHHHHHHHHHHhCCCEEEECcHhHHhh----CCHHHHHHHHHHHHHHCCCCEEEECcCCCCHHHHHHHHHcCCC
Confidence 456788888999999999999985544221111 22233333333 223444555443 55789999999999
Q ss_pred EEEEecCCchHHHHhhhcCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCC------CCCCHHHHHHHHHHHHHCC
Q 018252 217 EVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVE------GAIPPSKVAYVAKELHDMG 290 (359)
Q Consensus 217 ~V~i~~s~S~~~~~~n~~~t~~e~l~~i~~~i~~Ak~~G~~V~~~is~~fg~~~~------~r~~~e~l~~~a~~l~~~G 290 (359)
.|.+=.| ..+.+|+++..++++++|+.+|+.|.+.|...=|.++. .-++|+...++++ +.|
T Consensus 100 SVM~DgS----------~l~~eeNi~~T~~vve~Ah~~gv~VEaElG~vgg~ed~~~~~~~~~T~pe~a~~Fv~---~Tg 166 (283)
T PRK07998 100 SVMIDGA----------ALPFEENIAFTKEAVDFAKSYGVPVEAELGAILGKEDDHVSEADCKTEPEKVKDFVE---RTG 166 (283)
T ss_pred EEEEeCC----------CCCHHHHHHHHHHHHHHHHHcCCEEEEEeccCCCccccccccccccCCHHHHHHHHH---HhC
Confidence 9988333 23467889999999999999999998888754344432 1368888766655 457
Q ss_pred cCEEEE--cCCCCCCc-HHHHHHHHHHHHHhCCCceEEEEeCCCCCcHHHHHHHHHHcCCCEEece
Q 018252 291 CFEISL--GDTIGVGT-PGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQVSPMHAKPC 353 (359)
Q Consensus 291 ad~I~L--~DT~G~~~-P~~v~~lv~~l~~~~p~~~L~~H~HNd~GLAlANalaAv~AGa~~ID~t 353 (359)
+|.+-+ .-.=|.-. |.-=.++++.+++..+ +||.+|+=. |..--....|++.|+.-|+..
T Consensus 167 vD~LAvaiGt~HG~Y~~p~l~~~~l~~I~~~~~-vPLVlHGgS--G~~~e~~~~ai~~Gi~KiNi~ 229 (283)
T PRK07998 167 CDMLAVSIGNVHGLEDIPRIDIPLLKRIAEVSP-VPLVIHGGS--GIPPEILRSFVNYKVAKVNIA 229 (283)
T ss_pred cCeeehhccccccCCCCCCcCHHHHHHHHhhCC-CCEEEeCCC--CCCHHHHHHHHHcCCcEEEEC
Confidence 885333 22223221 4333577888888775 789988754 777788899999999988764
No 93
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=97.31 E-value=0.026 Score=52.47 Aligned_cols=152 Identities=26% Similarity=0.355 Sum_probs=108.3
Q ss_pred CCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcCCCCCHHHHHHHhh-hcCCCeEE-EEeCChHhHHHHHHcCCCEEEEec
Q 018252 145 VPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVR-DLEGARLP-VLTPNLKGFEAAIAAGAKEVAIFA 222 (359)
Q Consensus 145 ~~~~~k~~ia~~L~~aGv~~IEvG~fvspk~vPq~~D~~ev~~~l~-~~~~~~l~-~l~~n~~gie~a~~aGv~~V~i~~ 222 (359)
.+.++-+++++.|.+.|++.||+++ .+| ++.+.++.++ +.+++.+= +-+-+.++++.++++|.+-+
T Consensus 17 ~~~e~a~~~~~al~~~Gi~~iEit~-~t~-------~a~~~i~~l~~~~~~~~vGAGTVl~~~~a~~a~~aGA~Fi---- 84 (204)
T TIGR01182 17 DDVDDALPLAKALIEGGLRVLEVTL-RTP-------VALDAIRLLRKEVPDALIGAGTVLNPEQLRQAVDAGAQFI---- 84 (204)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEeC-CCc-------cHHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHHcCCCEE----
Confidence 4788999999999999999999997 223 4445555555 45665552 33458899999999998865
Q ss_pred CCchHHHHhhhcCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHHCCcCEEEEcCCCCC
Q 018252 223 SASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGV 302 (359)
Q Consensus 223 s~S~~~~~~n~~~t~~e~l~~i~~~i~~Ak~~G~~V~~~is~~fg~~~~~r~~~e~l~~~a~~l~~~Gad~I~L~DT~G~ 302 (359)
+|+.+. .+++++|+++|+.+. | |-.+|.++. .+.++|++.|-|
T Consensus 85 -vsP~~~---------------~~v~~~~~~~~i~~i---------P--G~~TptEi~----~A~~~Ga~~vKl------ 127 (204)
T TIGR01182 85 -VSPGLT---------------PELAKHAQDHGIPII---------P--GVATPSEIM----LALELGITALKL------ 127 (204)
T ss_pred -ECCCCC---------------HHHHHHHHHcCCcEE---------C--CCCCHHHHH----HHHHCCCCEEEE------
Confidence 233321 177889999999762 1 345666643 466799998876
Q ss_pred CcHHH-H--HHHHHHHHHhCCCceEEEEeCCCCCcHHHHHHHHHHcCCCEE
Q 018252 303 GTPGT-V--VPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQVSPMHA 350 (359)
Q Consensus 303 ~~P~~-v--~~lv~~l~~~~p~~~L~~H~HNd~GLAlANalaAv~AGa~~I 350 (359)
-|.. + ..+++.++.-+|++++- -+=|-...|.-.=+++|+..+
T Consensus 128 -FPA~~~GG~~yikal~~plp~i~~~----ptGGV~~~N~~~~l~aGa~~v 173 (204)
T TIGR01182 128 -FPAEVSGGVKMLKALAGPFPQVRFC----PTGGINLANVRDYLAAPNVAC 173 (204)
T ss_pred -CCchhcCCHHHHHHHhccCCCCcEE----ecCCCCHHHHHHHHhCCCEEE
Confidence 3333 2 26788888888876665 356777789999999998765
No 94
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=97.28 E-value=0.019 Score=55.30 Aligned_cols=154 Identities=19% Similarity=0.187 Sum_probs=94.0
Q ss_pred CCHHHHHHHHHHHHhCCCCEEEEecc-CCCCC-cCCC-----------CCHHHHHHHhhh----cCCCeEEEEe-CCh--
Q 018252 145 VPTGVKVELIRRLVSSGLPVVEATSF-VSPKW-VPQL-----------ADARDVMEAVRD----LEGARLPVLT-PNL-- 204 (359)
Q Consensus 145 ~~~~~k~~ia~~L~~aGv~~IEvG~f-vspk~-vPq~-----------~D~~ev~~~l~~----~~~~~l~~l~-~n~-- 204 (359)
-+.+.-+++++.|.+.|.+.||+|++ ..|.+ .|.. -..+.+++.++. ...+.+..++ -|.
T Consensus 28 P~~e~s~e~i~~L~~~GaD~iELGvPfSDPvADGP~Iq~A~~rAL~~g~t~~~~lel~~~~r~~~~~~Pivlm~Y~Npi~ 107 (265)
T COG0159 28 PDLETSLEIIKTLVEAGADILELGVPFSDPVADGPTIQAAHLRALAAGVTLEDTLELVEEIRAKGVKVPIVLMTYYNPIF 107 (265)
T ss_pred CCHHHHHHHHHHHHhCCCCEEEecCCCCCcCccCHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCCCCEEEEEeccHHH
Confidence 36789999999999999999999985 44421 1111 011333444432 2344555554 243
Q ss_pred -Hh----HHHHHHcCCCEEEEec-CCchHHHHhhhcCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCC-CHH
Q 018252 205 -KG----FEAAIAAGAKEVAIFA-SASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAI-PPS 277 (359)
Q Consensus 205 -~g----ie~a~~aGv~~V~i~~-s~S~~~~~~n~~~t~~e~l~~i~~~i~~Ak~~G~~V~~~is~~fg~~~~~r~-~~e 277 (359)
.| ++.+.++|++.+-+.. | ++...++.+.|+++|+....-+ .++ +++
T Consensus 108 ~~Gie~F~~~~~~~GvdGlivpDLP-----------------~ee~~~~~~~~~~~gi~~I~lv---------aPtt~~~ 161 (265)
T COG0159 108 NYGIEKFLRRAKEAGVDGLLVPDLP-----------------PEESDELLKAAEKHGIDPIFLV---------APTTPDE 161 (265)
T ss_pred HhhHHHHHHHHHHcCCCEEEeCCCC-----------------hHHHHHHHHHHHHcCCcEEEEe---------CCCCCHH
Confidence 34 4567889999887743 2 2233466777889999874322 233 444
Q ss_pred HHHHHHHHHHHCCcCEEEEcCCCCCCcH--HHHHHHHHHHHHhCCCceEEE
Q 018252 278 KVAYVAKELHDMGCFEISLGDTIGVGTP--GTVVPMLEAVMAVVPVEKLAV 326 (359)
Q Consensus 278 ~l~~~a~~l~~~Gad~I~L~DT~G~~~P--~~v~~lv~~l~~~~p~~~L~~ 326 (359)
.+.++++. .+-=++-++..=+.|.-.| ..+.++++.+|+.. ++|+.+
T Consensus 162 rl~~i~~~-a~GFiY~vs~~GvTG~~~~~~~~~~~~v~~vr~~~-~~Pv~v 210 (265)
T COG0159 162 RLKKIAEA-ASGFIYYVSRMGVTGARNPVSADVKELVKRVRKYT-DVPVLV 210 (265)
T ss_pred HHHHHHHh-CCCcEEEEecccccCCCcccchhHHHHHHHHHHhc-CCCeEE
Confidence 44444442 2211466777778888877 34899999999876 345554
No 95
>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family. DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.
Probab=97.26 E-value=0.028 Score=51.74 Aligned_cols=179 Identities=20% Similarity=0.160 Sum_probs=115.6
Q ss_pred CCCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcCCCCCHHHHHHHhhhcCCCeEEEEe--CC----h----HhHHHHHHc
Q 018252 144 TVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPVLT--PN----L----KGFEAAIAA 213 (359)
Q Consensus 144 ~~~~~~k~~ia~~L~~aGv~~IEvG~fvspk~vPq~~D~~ev~~~l~~~~~~~l~~l~--~n----~----~gie~a~~a 213 (359)
..+.++..++.+...+.|++.+-+-. .++ ..+.+.+.. .++.+.+.+ |. . ..++.|++.
T Consensus 13 ~~t~~~i~~~~~~a~~~~~~av~v~p----~~v------~~~~~~l~~-~~~~v~~~~~fp~g~~~~~~k~~eve~A~~~ 81 (203)
T cd00959 13 DATEEDIRKLCDEAKEYGFAAVCVNP----CFV------PLAREALKG-SGVKVCTVIGFPLGATTTEVKVAEAREAIAD 81 (203)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEcH----HHH------HHHHHHcCC-CCcEEEEEEecCCCCCcHHHHHHHHHHHHHc
Confidence 46888999999999999999887652 111 112222222 234554433 31 1 358899999
Q ss_pred CCCEEEEecCCchHHHHhhhcCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHHCCcCE
Q 018252 214 GAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFE 293 (359)
Q Consensus 214 Gv~~V~i~~s~S~~~~~~n~~~t~~e~l~~i~~~i~~Ak~~G~~V~~~is~~fg~~~~~r~~~e~l~~~a~~l~~~Gad~ 293 (359)
|+++|.+.+...... ....++.++.+..+++.|+ |+.+.+-+. . +..+++++...++.+.++|+|.
T Consensus 82 GAdevdvv~~~g~~~-----~~~~~~~~~ei~~v~~~~~--g~~lkvI~e--~-----~~l~~~~i~~a~ria~e~GaD~ 147 (203)
T cd00959 82 GADEIDMVINIGALK-----SGDYEAVYEEIAAVVEACG--GAPLKVILE--T-----GLLTDEEIIKACEIAIEAGADF 147 (203)
T ss_pred CCCEEEEeecHHHHh-----CCCHHHHHHHHHHHHHhcC--CCeEEEEEe--c-----CCCCHHHHHHHHHHHHHhCCCE
Confidence 999999987643221 1234567788888888876 776655232 2 2346889999999999999998
Q ss_pred EEEc--CCCCCCcHHHHHHHHHHHHHhCCCceEEEEeCCCCCcHHHHHHHHHHcCCCEEece
Q 018252 294 ISLG--DTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQVSPMHAKPC 353 (359)
Q Consensus 294 I~L~--DT~G~~~P~~v~~lv~~l~~~~p~~~L~~H~HNd~GLAlANalaAv~AGa~~ID~t 353 (359)
|-.. =+.+.++|+++..+-+.++...| +++.-=.+ | ...++.-+++|+++|-++
T Consensus 148 IKTsTG~~~~~at~~~v~~~~~~~~~~v~-ik~aGGik-t----~~~~l~~~~~g~~riG~s 203 (203)
T cd00959 148 IKTSTGFGPGGATVEDVKLMKEAVGGRVG-VKAAGGIR-T----LEDALAMIEAGATRIGTS 203 (203)
T ss_pred EEcCCCCCCCCCCHHHHHHHHHHhCCCce-EEEeCCCC-C----HHHHHHHHHhChhhccCC
Confidence 8766 22345678888777776663333 23321122 3 466778888899988653
No 96
>PRK12928 lipoyl synthase; Provisional
Probab=97.22 E-value=0.014 Score=57.05 Aligned_cols=164 Identities=19% Similarity=0.246 Sum_probs=111.6
Q ss_pred CCCCCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcCCC--CCHHHHHHHhhhc-CCCeEEEEeCCh-----HhHHHHHHc
Q 018252 142 KNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQL--ADARDVMEAVRDL-EGARLPVLTPNL-----KGFEAAIAA 213 (359)
Q Consensus 142 ~~~~~~~~k~~ia~~L~~aGv~~IEvG~fvspk~vPq~--~D~~ev~~~l~~~-~~~~l~~l~~n~-----~gie~a~~a 213 (359)
...++.++.+++++.+.+.|++.|-+.+....+ .|.. ....++++.+++. +.+++-++++.. +.++...++
T Consensus 84 ~~~~~~eei~~~a~~~~~~G~keivitg~~~dD-l~d~g~~~~~ell~~Ik~~~p~~~I~~ltp~~~~~~~e~L~~l~~A 162 (290)
T PRK12928 84 PMPLDPDEPERVAEAVAALGLRYVVLTSVARDD-LPDGGAAHFVATIAAIRARNPGTGIEVLTPDFWGGQRERLATVLAA 162 (290)
T ss_pred CCCCCHHHHHHHHHHHHHCCCCEEEEEEEeCCc-ccccCHHHHHHHHHHHHhcCCCCEEEEeccccccCCHHHHHHHHHc
Confidence 346899999999999999999999887643321 1111 1234566666654 678888888843 457778889
Q ss_pred CCCEEEEecCCch-HHHHhhhcCCHHHHHHHHHHHHHHHHhCC--CcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHHCC
Q 018252 214 GAKEVAIFASASE-AFSKSNINCSIEDSLVRYRAVAHAAKVLS--IPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMG 290 (359)
Q Consensus 214 Gv~~V~i~~s~S~-~~~~~n~~~t~~e~l~~i~~~i~~Ak~~G--~~V~~~is~~fg~~~~~r~~~e~l~~~a~~l~~~G 290 (359)
|.+.+...+..++ ++...+-+.+.+ ...++++.|++.| +.+...++ +|. +. +.+++.+..+.+.+.+
T Consensus 163 g~~i~~hnlEt~~~vl~~m~r~~t~e----~~le~l~~ak~~gp~i~~~s~iI--vG~---GE-T~ed~~etl~~Lrel~ 232 (290)
T PRK12928 163 KPDVFNHNLETVPRLQKAVRRGADYQ----RSLDLLARAKELAPDIPTKSGLM--LGL---GE-TEDEVIETLRDLRAVG 232 (290)
T ss_pred CchhhcccCcCcHHHHHHhCCCCCHH----HHHHHHHHHHHhCCCceecccEE--EeC---CC-CHHHHHHHHHHHHhcC
Confidence 9887765554444 333333344444 4567788899999 77777776 553 12 6788999999999999
Q ss_pred cCEEEEcC----------CCCCCcHHHHHHHHHHHH
Q 018252 291 CFEISLGD----------TIGVGTPGTVVPMLEAVM 316 (359)
Q Consensus 291 ad~I~L~D----------T~G~~~P~~v~~lv~~l~ 316 (359)
++.+.+.= -....+|+++..+-..-.
T Consensus 233 ~d~v~i~~Yl~p~~~~~~v~~~~~~~~f~~~~~~~~ 268 (290)
T PRK12928 233 CDRLTIGQYLRPSLAHLPVQRYWTPEEFEALGQIAR 268 (290)
T ss_pred CCEEEEEcCCCCCccCCceeeccCHHHHHHHHHHHH
Confidence 99887722 235667888777655443
No 97
>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=97.21 E-value=0.052 Score=52.00 Aligned_cols=181 Identities=12% Similarity=0.009 Sum_probs=115.8
Q ss_pred CCCHHHHHHHHHHHHhCCCCEEEEeccC---CCCCcCCCCCHHHH--HHHhhhcCCCeEEEEeCChHhHHHHHHcCCCEE
Q 018252 144 TVPTGVKVELIRRLVSSGLPVVEATSFV---SPKWVPQLADARDV--MEAVRDLEGARLPVLTPNLKGFEAAIAAGAKEV 218 (359)
Q Consensus 144 ~~~~~~k~~ia~~L~~aGv~~IEvG~fv---spk~vPq~~D~~ev--~~~l~~~~~~~l~~l~~n~~gie~a~~aGv~~V 218 (359)
.=+.++.+++++.+.++|+..+--|+|- +|..+-.+.. +.+ +..+.+-.+..+..=+-+..+++.+.+ .++.+
T Consensus 25 vEs~e~~~~~a~~~~~~g~~~~r~g~~kpRts~~sf~G~G~-~gl~~L~~~~~~~Gl~~~Tev~d~~~v~~~~e-~vdil 102 (250)
T PRK13397 25 IESYDHIRLAASSAKKLGYNYFRGGAYKPRTSAASFQGLGL-QGIRYLHEVCQEFGLLSVSEIMSERQLEEAYD-YLDVI 102 (250)
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEecccCCCCCCcccCCCCH-HHHHHHHHHHHHcCCCEEEeeCCHHHHHHHHh-cCCEE
Confidence 3467899999999999999999999873 4443322221 222 222223456666554457788888877 58887
Q ss_pred EEecCCchHHHHhhhcCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHHCCcCEEEEcC
Q 018252 219 AIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGD 298 (359)
Q Consensus 219 ~i~~s~S~~~~~~n~~~t~~e~l~~i~~~i~~Ak~~G~~V~~~is~~fg~~~~~r~~~e~l~~~a~~l~~~Gad~I~L~D 298 (359)
.+-.. .-.| .++++++.+.|..|. |+ . +--.+++++...++.+.+.|...|.|+-
T Consensus 103 qIgs~-----~~~n------------~~LL~~va~tgkPVi--lk----~--G~~~t~~e~~~A~e~i~~~Gn~~i~L~e 157 (250)
T PRK13397 103 QVGAR-----NMQN------------FEFLKTLSHIDKPIL--FK----R--GLMATIEEYLGALSYLQDTGKSNIILCE 157 (250)
T ss_pred EECcc-----cccC------------HHHHHHHHccCCeEE--Ee----C--CCCCCHHHHHHHHHHHHHcCCCeEEEEc
Confidence 77432 1111 255666666788773 22 1 1146899999999999999999999997
Q ss_pred --CCCCCcHHH-HH--HHHHHHHHhCCCceEEE---EeCCCCCcHHHHHHHHHHcCCC--EEec
Q 018252 299 --TIGVGTPGT-VV--PMLEAVMAVVPVEKLAV---HLHDTYGQSLPNILISLQVSPM--HAKP 352 (359)
Q Consensus 299 --T~G~~~P~~-v~--~lv~~l~~~~p~~~L~~---H~HNd~GLAlANalaAv~AGa~--~ID~ 352 (359)
+.|+-+|.+ +. .-+..+++.+. .++.+ |.=-.+-+-.+-+++|+.+||+ .|+.
T Consensus 158 Rg~~~Y~~~~~n~~dl~ai~~lk~~~~-lPVivd~SHs~G~r~~v~~~a~AAvA~GAdGl~IE~ 220 (250)
T PRK13397 158 RGVRGYDVETRNMLDIMAVPIIQQKTD-LPIIVDVSHSTGRRDLLLPAAKIAKAVGANGIMMEV 220 (250)
T ss_pred cccCCCCCccccccCHHHHHHHHHHhC-CCeEECCCCCCcccchHHHHHHHHHHhCCCEEEEEe
Confidence 444444422 22 33566676553 45433 4422233345779999999999 7765
No 98
>TIGR02351 thiH thiazole biosynthesis protein ThiH. Members this protein family are the ThiH protein of thiamine biosynthesis, a homolog of the BioB protein of biotin biosynthesis. Genes for the this protein generally are found in operons with other thiamin biosynthesis genes.
Probab=97.21 E-value=0.032 Score=56.08 Aligned_cols=177 Identities=13% Similarity=0.086 Sum_probs=107.5
Q ss_pred CCCCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcCCCCCHHHHHHHhhhc----CCCeEEEEeCChHhHHHHHHcCCCEE
Q 018252 143 NTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDL----EGARLPVLTPNLKGFEAAIAAGAKEV 218 (359)
Q Consensus 143 ~~~~~~~k~~ia~~L~~aGv~~IEvG~fvspk~vPq~~D~~ev~~~l~~~----~~~~l~~l~~n~~gie~a~~aGv~~V 218 (359)
..++.++.++.++.+.+.|+..|=+.+...| ...+.+.+.+.++.+ +.+.+-+..-+.++++...++|++++
T Consensus 101 ~~Ls~eEI~~~a~~~~~~Gv~~i~lvgGe~p----~~~~~e~l~eii~~Ik~~~p~i~Iei~~lt~e~~~~Lk~aGv~r~ 176 (366)
T TIGR02351 101 KKLNEEEIEREIEAIKKSGFKEILLVTGESE----KAAGVEYIAEAIKLAREYFSSLAIEVQPLNEEEYKKLVEAGLDGV 176 (366)
T ss_pred CcCCHHHHHHHHHHHHhCCCCEEEEeeCCCC----CCCCHHHHHHHHHHHHHhCCccccccccCCHHHHHHHHHcCCCEE
Confidence 4589999999999999999999876543333 224555565655533 33333222236688999999999999
Q ss_pred EEecCCchHHHHhhhcC-CHHHHHHHHHHHHHHHHhCCCc-EEEEEeeeecCCCCCCCCHHHHHHHHHHHHHCCc-----
Q 018252 219 AIFASASEAFSKSNINC-SIEDSLVRYRAVAHAAKVLSIP-VRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGC----- 291 (359)
Q Consensus 219 ~i~~s~S~~~~~~n~~~-t~~e~l~~i~~~i~~Ak~~G~~-V~~~is~~fg~~~~~r~~~e~l~~~a~~l~~~Ga----- 291 (359)
++..-+.+.-...++.. ......+...+.++.|++.|++ +...+. +|.+. ......+++..+..+++
T Consensus 177 ~i~lET~~~~~y~~i~~~g~~h~~~~rl~~i~~a~~aG~~~v~~g~i--~Gl~e----~~~d~~~~a~~l~~L~~~~~~~ 250 (366)
T TIGR02351 177 TVYQETYNEKKYKKHHLAGKKKDFRYRLNTPERAAKAGMRKIGIGAL--LGLDD----WRTDAFFTAYHLRYLQKKYWKT 250 (366)
T ss_pred EEEeecCCHHHHHhcCcCCCCCCHHHHHHHHHHHHHcCCCeeceeEE--EeCch----hHHHHHHHHHHHHHHHHHcCCC
Confidence 99876642222223320 0111233445678888999997 655444 66542 33334444444333322
Q ss_pred -CEEE---Ec------CCCCCCcHHHHHHHHHHHHHhCCCceEEEEeC
Q 018252 292 -FEIS---LG------DTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLH 329 (359)
Q Consensus 292 -d~I~---L~------DT~G~~~P~~v~~lv~~l~~~~p~~~L~~H~H 329 (359)
..|. |- ......+|.++.+++..+|-.+|...|-+=+-
T Consensus 251 ~~sv~~~~l~P~~g~~~~~~~l~~~~~~~~i~~~R~~~P~~~i~~s~g 298 (366)
T TIGR02351 251 EISISVPRLRPCTNGLKPKVIVTDRELVQIICAYRLFDPFVEISLSTR 298 (366)
T ss_pred CccccccccccCCCCCCCCCcCCHHHHHHHHHHHHHhCcccccEEecC
Confidence 2222 22 22345678999999999998889766665443
No 99
>PLN02428 lipoic acid synthase
Probab=97.19 E-value=0.03 Score=56.11 Aligned_cols=161 Identities=17% Similarity=0.176 Sum_probs=107.5
Q ss_pred CCCCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcCC--CCCHHHHHHHhhh-cCCCeEEEEeCC----hHhHHHHHHcCC
Q 018252 143 NTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQ--LADARDVMEAVRD-LEGARLPVLTPN----LKGFEAAIAAGA 215 (359)
Q Consensus 143 ~~~~~~~k~~ia~~L~~aGv~~IEvG~fvspk~vPq--~~D~~ev~~~l~~-~~~~~l~~l~~n----~~gie~a~~aGv 215 (359)
.....++..++++.+.+.|+++|-+.+...... |. .....++++.+++ .|++.+.+++|. .+.++...++|+
T Consensus 128 ~~~d~~Ep~~vA~~v~~~Glk~vvltSg~rddl-~D~ga~~~~elir~Ir~~~P~i~Ie~L~pdf~~d~elL~~L~eAG~ 206 (349)
T PLN02428 128 PPPDPDEPENVAEAIASWGVDYVVLTSVDRDDL-PDGGSGHFAETVRRLKQLKPEILVEALVPDFRGDLGAVETVATSGL 206 (349)
T ss_pred CCCChhhHHHHHHHHHHcCCCEEEEEEcCCCCC-CcccHHHHHHHHHHHHHhCCCcEEEEeCccccCCHHHHHHHHHcCC
Confidence 455678888999999999999987776432211 21 1123445555554 578888888874 346788889999
Q ss_pred CEEEEecCCchHHHHhhhc---CCHHHHHHHHHHHHHHHHhC--CCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHHCC
Q 018252 216 KEVAIFASASEAFSKSNIN---CSIEDSLVRYRAVAHAAKVL--SIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMG 290 (359)
Q Consensus 216 ~~V~i~~s~S~~~~~~n~~---~t~~e~l~~i~~~i~~Ak~~--G~~V~~~is~~fg~~~~~r~~~e~l~~~a~~l~~~G 290 (359)
+.+..-+-+++-+. .+++ .+.++.+ ++++.|+++ |+.+..+++ +|. + =+.+++.+.++.+.+.|
T Consensus 207 d~i~hnlETv~rL~-~~Ir~~~~sye~~L----e~L~~ak~~~pGi~tkSg~M--vGL---G-ET~Edv~e~l~~Lrelg 275 (349)
T PLN02428 207 DVFAHNIETVERLQ-RIVRDPRAGYKQSL----DVLKHAKESKPGLLTKTSIM--LGL---G-ETDEEVVQTMEDLRAAG 275 (349)
T ss_pred CEEccCccCcHHHH-HHhcCCCCCHHHHH----HHHHHHHHhCCCCeEEEeEE--Eec---C-CCHHHHHHHHHHHHHcC
Confidence 99877655555433 2343 4555554 666677777 998888887 554 1 27789999999999999
Q ss_pred cCEEEEcCC-------C---CCCcHHHHHHHHHHH
Q 018252 291 CFEISLGDT-------I---GVGTPGTVVPMLEAV 315 (359)
Q Consensus 291 ad~I~L~DT-------~---G~~~P~~v~~lv~~l 315 (359)
+|.+.+.=- . -.-+|+++..+=+.-
T Consensus 276 vd~vtigqyL~Ps~~h~~v~~~v~p~~f~~~~~~~ 310 (349)
T PLN02428 276 VDVVTFGQYLRPTKRHLPVKEYVTPEKFEFWREYG 310 (349)
T ss_pred CCEEeeccccCCCcceeeeecccCHHHHHHHHHHH
Confidence 998866332 1 123466666654433
No 100
>PF01116 F_bP_aldolase: Fructose-bisphosphate aldolase class-II; InterPro: IPR000771 Fructose-bisphosphate aldolase [, ] is a glycolytic enzyme that catalyses the reversible aldol cleavage or condensation of fructose-1,6-bisphosphate into dihydroxyacetone-phosphate and glyceraldehyde 3-phosphate. There are two classes of fructose-bisphosphate aldolases with different catalytic mechanisms. Class-II aldolases [], mainly found in prokaryotes and fungi, are homodimeric enzymes, which require a divalent metal ion, generally zinc, for their activity. This family also includes the Escherichia coli galactitol operon protein, gatY, which catalyses the transformation of tagatose 1,6-bisphosphate into glycerone phosphate and D-glyceraldehyde 3-phosphate; and E. coli N-acetyl galactosamine operon protein, agaY, which catalyses the same reaction. There are two histidine residues in the first half of the sequence of these enzymes that have been shown to be involved in binding a zinc ion [].; GO: 0008270 zinc ion binding, 0016832 aldehyde-lyase activity, 0005975 carbohydrate metabolic process; PDB: 3Q94_A 1RVG_B 1RV8_C 3C4U_A 3C56_B 3C52_A 2FJK_A 3N9R_P 3N9S_A 1GVF_B ....
Probab=97.19 E-value=0.018 Score=56.17 Aligned_cols=192 Identities=17% Similarity=0.169 Sum_probs=126.7
Q ss_pred CCCCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcCCCCCHHHHHHHhh---hcCCCeEEEEeC---ChHhHHHHHHcCCC
Q 018252 143 NTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVR---DLEGARLPVLTP---NLKGFEAAIAAGAK 216 (359)
Q Consensus 143 ~~~~~~~k~~ia~~L~~aGv~~IEvG~fvspk~vPq~~D~~ev~~~l~---~~~~~~l~~l~~---n~~gie~a~~aGv~ 216 (359)
+.+..+.-..++++-.+.+.+.|=-.+...-++ ...+.+...++ +...+.+..... +...+.+|+++|.+
T Consensus 23 N~~n~e~~~avi~AAe~~~sPvIlq~~~~~~~~----~~~~~~~~~~~~~a~~~~vPValHLDH~~~~e~i~~ai~~Gft 98 (287)
T PF01116_consen 23 NVYNLETARAVIEAAEELNSPVILQISPSEVKY----MGLEYLAAMVKAAAEEASVPVALHLDHGKDFEDIKRAIDAGFT 98 (287)
T ss_dssp E-SSHHHHHHHHHHHHHTTS-EEEEEEHHHHHH----HHHHHHHHHHHHHHHHSTSEEEEEEEEE-SHHHHHHHHHHTSS
T ss_pred eeCCHHHHHHHHHHHHHhCCCEEEEcchhhhhh----hhHHHHHHHHHHHHHHcCCCEEeecccCCCHHHHHHHHHhCcc
Confidence 446788999999999999999974333211110 11122222222 233566655543 56889999999999
Q ss_pred EEEEecCCchHHHHhhhcCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCC---------CCCCHHHHHHHHHHHH
Q 018252 217 EVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVE---------GAIPPSKVAYVAKELH 287 (359)
Q Consensus 217 ~V~i~~s~S~~~~~~n~~~t~~e~l~~i~~~i~~Ak~~G~~V~~~is~~fg~~~~---------~r~~~e~l~~~a~~l~ 287 (359)
.|.+=.| ..+.+|+++.-++++++|++.|+.|.+.|-..-|.++. .-++|++..++++
T Consensus 99 SVM~DgS----------~l~~eeNi~~T~~vv~~ah~~gv~VEaElG~i~g~ed~~~~~~~~~~~~TdP~~a~~Fv~--- 165 (287)
T PF01116_consen 99 SVMIDGS----------ALPFEENIAITREVVEYAHAYGVSVEAELGHIGGKEDGIESEEETESLYTDPEEAKEFVE--- 165 (287)
T ss_dssp EEEEE-T----------TS-HHHHHHHHHHHHHHHHHTT-EEEEEESBSSSSCTTCSSSTT-TTCSSSHHHHHHHHH---
T ss_pred cccccCC----------cCCHHHHHHHHHHHHHhhhhhCCEEEEEeeeeeccCCCccccccccccccCHHHHHHHHH---
Confidence 9877443 23467889999999999999999999998876555432 1268888777765
Q ss_pred HCCcCEEEE--cCCCC--CC--cHHHHHHHHHHHHHhCCCceEEEEeCCCCCcHHHHHHHHHHcCCCEEece
Q 018252 288 DMGCFEISL--GDTIG--VG--TPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQVSPMHAKPC 353 (359)
Q Consensus 288 ~~Gad~I~L--~DT~G--~~--~P~~v~~lv~~l~~~~p~~~L~~H~HNd~GLAlANalaAv~AGa~~ID~t 353 (359)
+.|+|.+.+ .-.=| .. .|.-=.++++.+++.+|++||.+|+ .-|+.--....|++.|+.-|+..
T Consensus 166 ~TgvD~LAvaiGt~HG~y~~~~~p~Ld~~~L~~I~~~~~~iPLVlHG--gSG~~~e~~~~ai~~Gi~KiNi~ 235 (287)
T PF01116_consen 166 ETGVDALAVAIGTAHGMYKGGKKPKLDFDRLKEIREAVPDIPLVLHG--GSGLPDEQIRKAIKNGISKINIG 235 (287)
T ss_dssp HHTTSEEEE-SSSBSSSBSSSSSTC--HHHHHHHHHHHHTSEEEESS--CTTS-HHHHHHHHHTTEEEEEES
T ss_pred HhCCCEEEEecCccccccCCCCCcccCHHHHHHHHHhcCCCCEEEEC--CCCCCHHHHHHHHHcCceEEEEe
Confidence 458997433 22222 22 4555578888999998557888876 56777779999999999988754
No 101
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=97.19 E-value=0.17 Score=45.90 Aligned_cols=173 Identities=17% Similarity=0.109 Sum_probs=97.8
Q ss_pred CCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcCCCCCHHHHHHHhhhcCCCeE--EEEeCCh-HhHHHHHHcCCCEEEEe
Q 018252 145 VPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARL--PVLTPNL-KGFEAAIAAGAKEVAIF 221 (359)
Q Consensus 145 ~~~~~k~~ia~~L~~aGv~~IEvG~fvspk~vPq~~D~~ev~~~l~~~~~~~l--~~l~~n~-~gie~a~~aGv~~V~i~ 221 (359)
.....-.+.++.+.+.|++.||++.-.. ..+|......+..+.+++.++..+ -.++.+. +-++.+.++|++.|.+.
T Consensus 8 ~~~~~~~~~~~~~~~~g~d~i~~~~~Dg-~~~~~~~~~~~~v~~i~~~~~~~v~v~lm~~~~~~~~~~~~~~gadgv~vh 86 (210)
T TIGR01163 8 ADFARLGEEVKAVEEAGADWIHVDVMDG-HFVPNLTFGPPVLEALRKYTDLPIDVHLMVENPDRYIEDFAEAGADIITVH 86 (210)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEcCCCC-CCCCCcccCHHHHHHHHhcCCCcEEEEeeeCCHHHHHHHHHHcCCCEEEEc
Confidence 3456678899999999999999972100 011122222233455544334343 2444444 56788889999998874
Q ss_pred cCCchHHHHhhhcCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHHCCcCEEEE----c
Q 018252 222 ASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISL----G 297 (359)
Q Consensus 222 ~s~S~~~~~~n~~~t~~e~l~~i~~~i~~Ak~~G~~V~~~is~~fg~~~~~r~~~e~l~~~a~~l~~~Gad~I~L----~ 297 (359)
....+ .....++.++++|+.+...++ + .++.+.+.++ . .++|.|.+ +
T Consensus 87 ~~~~~----------------~~~~~~~~~~~~g~~~~~~~~----~----~t~~e~~~~~----~-~~~d~i~~~~~~~ 137 (210)
T TIGR01163 87 PEASE----------------HIHRLLQLIKDLGAKAGIVLN----P----ATPLEFLEYV----L-PDVDLVLLMSVNP 137 (210)
T ss_pred cCCch----------------hHHHHHHHHHHcCCcEEEEEC----C----CCCHHHHHHH----H-hhCCEEEEEEEcC
Confidence 32211 123556788888987643332 1 1233333333 2 35677665 3
Q ss_pred CCCCCCcHHHHHHHHHHHHHhC----CCceEEEEeCCCCCcHHHHHHHHHHcCCCEEe
Q 018252 298 DTIGVGTPGTVVPMLEAVMAVV----PVEKLAVHLHDTYGQSLPNILISLQVSPMHAK 351 (359)
Q Consensus 298 DT~G~~~P~~v~~lv~~l~~~~----p~~~L~~H~HNd~GLAlANalaAv~AGa~~ID 351 (359)
-+.|-..+....+.++.+++.. +..++.+= -|....|+-.++++||+.|=
T Consensus 138 g~tg~~~~~~~~~~i~~i~~~~~~~~~~~~i~v~----GGI~~env~~l~~~gad~ii 191 (210)
T TIGR01163 138 GFGGQKFIPDTLEKIREVRKMIDENGLSILIEVD----GGVNDDNARELAEAGADILV 191 (210)
T ss_pred CCCcccccHHHHHHHHHHHHHHHhcCCCceEEEE----CCcCHHHHHHHHHcCCCEEE
Confidence 3344222333334555555533 22455443 37888898888999999764
No 102
>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4.2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....
Probab=97.17 E-value=0.014 Score=56.27 Aligned_cols=175 Identities=20% Similarity=0.259 Sum_probs=102.1
Q ss_pred CCHHHHHHHHHHHHhCCCCEEEEecc-CCCCC-cCCC-----------CCHHHHHHHhh----hcCCCeEEEEeC-Ch--
Q 018252 145 VPTGVKVELIRRLVSSGLPVVEATSF-VSPKW-VPQL-----------ADARDVMEAVR----DLEGARLPVLTP-NL-- 204 (359)
Q Consensus 145 ~~~~~k~~ia~~L~~aGv~~IEvG~f-vspk~-vPq~-----------~D~~ev~~~l~----~~~~~~l~~l~~-n~-- 204 (359)
-+.+.-+++++.|.+.|++.||+|+| ..|.+ .|.. .+.+.+++.++ +.+++.+..++= |.
T Consensus 21 P~~~~~~~~~~~l~~~GaD~iEiGiPfSDP~ADGpvIq~A~~rAL~~G~~~~~~~~~~~~ir~~~~~~pivlm~Y~N~i~ 100 (259)
T PF00290_consen 21 PDLETTLEILKALEEAGADIIEIGIPFSDPVADGPVIQKASQRALKNGFTLEKIFELVKEIRKKEPDIPIVLMTYYNPIF 100 (259)
T ss_dssp SSHHHHHHHHHHHHHTTBSSEEEE--SSSCTTSSHHHHHHHHHHHHTT--HHHHHHHHHHHHHHCTSSEEEEEE-HHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHhccCCCCCEEEEeeccHHh
Confidence 45788899999999999999999985 44421 0111 11233344443 345677766662 43
Q ss_pred -Hh----HHHHHHcCCCEEEEec-CCchHHHHhhhcCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHH
Q 018252 205 -KG----FEAAIAAGAKEVAIFA-SASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSK 278 (359)
Q Consensus 205 -~g----ie~a~~aGv~~V~i~~-s~S~~~~~~n~~~t~~e~l~~i~~~i~~Ak~~G~~V~~~is~~fg~~~~~r~~~e~ 278 (359)
.| ++.+.++|++-+-+.. |. +...++.+.++++|+....-++ | .++++.
T Consensus 101 ~~G~e~F~~~~~~aGvdGlIipDLP~-----------------ee~~~~~~~~~~~gl~~I~lv~-----p---~t~~~R 155 (259)
T PF00290_consen 101 QYGIERFFKEAKEAGVDGLIIPDLPP-----------------EESEELREAAKKHGLDLIPLVA-----P---TTPEER 155 (259)
T ss_dssp HH-HHHHHHHHHHHTEEEEEETTSBG-----------------GGHHHHHHHHHHTT-EEEEEEE-----T---TS-HHH
T ss_pred ccchHHHHHHHHHcCCCEEEEcCCCh-----------------HHHHHHHHHHHHcCCeEEEEEC-----C---CCCHHH
Confidence 34 4456678998887753 21 1223556778899998754443 1 245555
Q ss_pred HHHHHHHHHHCC-cCEEEEcCCCCCCc--HHHHHHHHHHHHHhCCCceEEEEeCCCCCcHHHHHHHHHHcCCCEEe
Q 018252 279 VAYVAKELHDMG-CFEISLGDTIGVGT--PGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQVSPMHAK 351 (359)
Q Consensus 279 l~~~a~~l~~~G-ad~I~L~DT~G~~~--P~~v~~lv~~l~~~~p~~~L~~H~HNd~GLAlANalaAv~AGa~~ID 351 (359)
+..+++... | ++-+...-+.|.-. |.++.++++.+|+.. +.|+.+= +|...+.-...+..|||.|=
T Consensus 156 i~~i~~~a~--gFiY~vs~~GvTG~~~~~~~~l~~~i~~ik~~~-~~Pv~vG----FGI~~~e~~~~~~~~aDGvI 224 (259)
T PF00290_consen 156 IKKIAKQAS--GFIYLVSRMGVTGSRTELPDELKEFIKRIKKHT-DLPVAVG----FGISTPEQAKKLAAGADGVI 224 (259)
T ss_dssp HHHHHHH-S--SEEEEESSSSSSSTTSSCHHHHHHHHHHHHHTT-SS-EEEE----SSS-SHHHHHHHHTTSSEEE
T ss_pred HHHHHHhCC--cEEEeeccCCCCCCcccchHHHHHHHHHHHhhc-CcceEEe----cCCCCHHHHHHHHccCCEEE
Confidence 555555332 2 33444455666653 789999999999976 3555542 35555555666668888763
No 103
>PRK09613 thiH thiamine biosynthesis protein ThiH; Reviewed
Probab=97.17 E-value=0.057 Score=56.19 Aligned_cols=194 Identities=11% Similarity=0.101 Sum_probs=121.3
Q ss_pred CCCCCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcCCCCCHHHHHHHhhhcC----------CCeEEEEeCChHhHHHHH
Q 018252 142 KNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLE----------GARLPVLTPNLKGFEAAI 211 (359)
Q Consensus 142 ~~~~~~~~k~~ia~~L~~aGv~~IEvG~fvspk~vPq~~D~~ev~~~l~~~~----------~~~l~~l~~n~~gie~a~ 211 (359)
...++.++.++-++.+.+.|++.+=+-+..+|. ..+.+.+.+.++.+. .+.+.+-..+.++++...
T Consensus 112 r~~Ls~EEI~~ea~~~~~~G~~~i~LvsGe~p~----~~~~eyi~e~i~~I~~~~~~~g~i~~v~inig~lt~eey~~Lk 187 (469)
T PRK09613 112 RKKLTQEEIREEVKALEDMGHKRLALVAGEDPP----NCDIEYILESIKTIYSTKHGNGEIRRVNVNIAPTTVENYKKLK 187 (469)
T ss_pred ceECCHHHHHHHHHHHHHCCCCEEEEEeCCCCC----CCCHHHHHHHHHHHHHhccccCcceeeEEEeecCCHHHHHHHH
Confidence 356899999999999999999998775544432 134555555554321 122222223668999999
Q ss_pred HcCCCEEEEecCCc--hHHHHhhh-c--CCHHHHHHHHHHHHHHHHhCCCc-EEEEEeeeecCCCCCCCCHHHHHHHHHH
Q 018252 212 AAGAKEVAIFASAS--EAFSKSNI-N--CSIEDSLVRYRAVAHAAKVLSIP-VRGYVSCVVGCPVEGAIPPSKVAYVAKE 285 (359)
Q Consensus 212 ~aGv~~V~i~~s~S--~~~~~~n~-~--~t~~e~l~~i~~~i~~Ak~~G~~-V~~~is~~fg~~~~~r~~~e~l~~~a~~ 285 (359)
++|++.+.++.-+. +.+.+.-. + .+.++- .+.++.|++.|++ |...+. ||.++ .+ ++...++..
T Consensus 188 eaGv~~~~l~qETY~~ety~~~hp~g~k~~y~~R----l~t~~rA~~aGi~~Vg~G~L--~GLge-~~---~E~~~l~~h 257 (469)
T PRK09613 188 EAGIGTYQLFQETYHKPTYEKMHPSGPKSDYDWR----LTAMDRAMEAGIDDVGIGVL--FGLYD-YK---FEVLGLLMH 257 (469)
T ss_pred HcCCCEEEeccccCCHHHHHhcCCCCCCCCHHHH----HHHHHHHHHcCCCeeCeEEE--EcCCC-CH---HHHHHHHHH
Confidence 99999999887553 23322111 1 234433 3667888999997 754443 77543 22 233333333
Q ss_pred HH------HCCcCEEEEc------CC-C----CCCcHHHHHHHHHHHHHhCCCceEEEEeCCCCCcHHHHHHHHHHcCCC
Q 018252 286 LH------DMGCFEISLG------DT-I----GVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQVSPM 348 (359)
Q Consensus 286 l~------~~Gad~I~L~------DT-~----G~~~P~~v~~lv~~l~~~~p~~~L~~H~HNd~GLAlANalaAv~AGa~ 348 (359)
+. ..|++.|+++ +| . -..++.++.+++..+|=.+|...|-+=++-.-.+ =+ ..+..|++
T Consensus 258 l~~L~~~~gvgp~tIsvprl~P~~Gtpl~~~~~~vsd~e~lriiA~~RL~~P~~~I~lStRE~~~~--r~--~~~~~gvt 333 (469)
T PRK09613 258 AEHLEERFGVGPHTISVPRLRPADGSDLENFPYLVSDEDFKKIVAILRLAVPYTGMILSTRESAEL--RR--EVLELGVS 333 (469)
T ss_pred HHHHHHhhCCCCccccccceecCCCCCcccCCCCCCHHHHHHHHHHHHHHCCCCCceeecCCCHHH--HH--HHHhhcce
Confidence 32 3367766654 44 2 2357789999999999999987777777766442 22 44566888
Q ss_pred EEece
Q 018252 349 HAKPC 353 (359)
Q Consensus 349 ~ID~t 353 (359)
.|++.
T Consensus 334 ~~sag 338 (469)
T PRK09613 334 QISAG 338 (469)
T ss_pred eeccc
Confidence 88653
No 104
>PRK05927 hypothetical protein; Provisional
Probab=97.13 E-value=0.031 Score=55.94 Aligned_cols=197 Identities=13% Similarity=0.098 Sum_probs=122.0
Q ss_pred CCCCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcCCCCCHHHH---HHHhhh-cCCCeEEEEeC-------------ChH
Q 018252 143 NTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDV---MEAVRD-LEGARLPVLTP-------------NLK 205 (359)
Q Consensus 143 ~~~~~~~k~~ia~~L~~aGv~~IEvG~fvspk~vPq~~D~~ev---~~~l~~-~~~~~l~~l~~-------------n~~ 205 (359)
..++.++.++.++...+.|+..|-+.+..+|+ .+.+.+ ++.+++ .|++.+-++.+ ..+
T Consensus 74 y~ls~eei~~~a~~~~~~G~~~i~i~gG~~p~-----~~~e~~~~~i~~ik~~~p~l~~~~~s~~ei~~~~~~~G~~~~e 148 (350)
T PRK05927 74 YLLSFDEFRSLMQRYVSAGVKTVLLQGGVHPQ-----LGIDYLEELVRITVKEFPSLHPHFFSAVEIAHAAQVSGISTEQ 148 (350)
T ss_pred cccCHHHHHHHHHHHHHCCCCEEEEeCCCCCC-----CCHHHHHHHHHHHHHHCCCCcccCCCHHHHHHHHHhcCCCHHH
Confidence 47899999999999999999998887666654 234444 444443 35565433332 124
Q ss_pred hHHHHHHcCCCEEE---EecCCchHHHHhhhcCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHH
Q 018252 206 GFEAAIAAGAKEVA---IFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYV 282 (359)
Q Consensus 206 gie~a~~aGv~~V~---i~~s~S~~~~~~n~~~t~~e~l~~i~~~i~~Ak~~G~~V~~~is~~fg~~~~~r~~~e~l~~~ 282 (359)
.+++..++|++.+. .-+..+......-.++. ..+.-.++++.|+++|+++...+. ||- - =++++.++.
T Consensus 149 ~l~~Lk~aGl~~l~g~~~Et~~~~~~~~~~p~k~---~~~~rl~~i~~A~~lGi~~~sg~l--~G~-g---Et~e~ri~~ 219 (350)
T PRK05927 149 ALERLWDAGQRTIPGGGAEILSERVRKIISPKKM---GPDGWIQFHKLAHRLGFRSTATMM--FGH-V---ESPEDILLH 219 (350)
T ss_pred HHHHHHHcCcccCCCCCchhCCHHHhhccCCCCC---CHHHHHHHHHHHHHcCCCcCceeE--Eee-C---CCHHHHHHH
Confidence 56777889997654 22222222221111221 123455888999999999876665 653 1 256666666
Q ss_pred HHHHHHCCc-----CE-EEE----cCCC---C---CCcHHHHHHHHHHHHHhCCCceEEEEeCCCCCcHHHHHHHHHHcC
Q 018252 283 AKELHDMGC-----FE-ISL----GDTI---G---VGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQVS 346 (359)
Q Consensus 283 a~~l~~~Ga-----d~-I~L----~DT~---G---~~~P~~v~~lv~~l~~~~p~~~L~~H~HNd~GLAlANalaAv~AG 346 (359)
+..+.+.+- -. |-+ .+|- . ..+|.++-++++..|-.+|++++ .-. --..+|..-+..|+.+|
T Consensus 220 l~~Lr~lqd~~~gf~~fIp~~~~~~~tpl~~~~~~~~s~~e~Lr~iAv~Rl~lp~~~~-i~~-~w~~~G~~~~q~~L~~G 297 (350)
T PRK05927 220 LQTLRDAQDENPGFYSFIPWSYKPGNTALGRRVPHQASPELYYRILAVARIFLDNFDH-IAA-SWFGEGKEEGAKGLHYG 297 (350)
T ss_pred HHHHHHhhHhhCCeeeeeecCcCCCCCccccCCCCCCCHHHHHHHHHHHHHhCCCCCc-ccC-CccccCHHHHHHHHhCC
Confidence 666655531 11 222 2442 1 47888888888888777776431 111 22335667788999999
Q ss_pred CCEEeceee
Q 018252 347 PMHAKPCFT 355 (359)
Q Consensus 347 a~~ID~tl~ 355 (359)
|+-++++++
T Consensus 298 anDlggt~~ 306 (350)
T PRK05927 298 ADDFGGTIL 306 (350)
T ss_pred CccccCCCc
Confidence 999999875
No 105
>TIGR00126 deoC deoxyribose-phosphate aldolase. Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria.
Probab=97.13 E-value=0.037 Score=51.71 Aligned_cols=184 Identities=16% Similarity=0.151 Sum_probs=119.5
Q ss_pred CCCCCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcCCCCCHHHHHHHhhhcCCCeEEEEe--C---C---h--HhHHHHH
Q 018252 142 KNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPVLT--P---N---L--KGFEAAI 211 (359)
Q Consensus 142 ~~~~~~~~k~~ia~~L~~aGv~~IEvG~fvspk~vPq~~D~~ev~~~l~~~~~~~l~~l~--~---n---~--~gie~a~ 211 (359)
+...+.++..++.+.-.+.|+..+-+- |.++| ...+.++ ..++++.+.+ | . . ..++.|+
T Consensus 12 ~p~~t~~~i~~lc~~A~~~~~~avcv~----p~~v~------~a~~~l~-~~~v~v~tVigFP~G~~~~~~K~~E~~~Av 80 (211)
T TIGR00126 12 KADTTEEDIITLCAQAKTYKFAAVCVN----PSYVP------LAKELLK-GTEVRICTVVGFPLGASTTDVKLYETKEAI 80 (211)
T ss_pred CCCCCHHHHHHHHHHHHhhCCcEEEeC----HHHHH------HHHHHcC-CCCCeEEEEeCCCCCCCcHHHHHHHHHHHH
Confidence 446788899999999888888877653 32221 1223332 2356776665 4 1 1 3678899
Q ss_pred HcCCCEEEEecCCchHHHHhhhcCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHHCCc
Q 018252 212 AAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGC 291 (359)
Q Consensus 212 ~aGv~~V~i~~s~S~~~~~~n~~~t~~e~l~~i~~~i~~Ak~~G~~V~~~is~~fg~~~~~r~~~e~l~~~a~~l~~~Ga 291 (359)
+.|+++|.+.+...... ....+...+.+..+++.+. |+.+.+-+. . +..+.+++...++.+.++|+
T Consensus 81 ~~GAdEiDvv~n~g~l~-----~g~~~~v~~ei~~i~~~~~--g~~lKvIlE--~-----~~L~~~ei~~a~~ia~eaGA 146 (211)
T TIGR00126 81 KYGADEVDMVINIGALK-----DGNEEVVYDDIRAVVEACA--GVLLKVIIE--T-----GLLTDEEIRKACEICIDAGA 146 (211)
T ss_pred HcCCCEEEeecchHhhh-----CCcHHHHHHHHHHHHHHcC--CCeEEEEEe--c-----CCCCHHHHHHHHHHHHHhCC
Confidence 99999999987644321 1235667778888887775 666654332 2 23566788899999999999
Q ss_pred CEEEEcCC--CCCCcHHHHHHHHHHHHHhCCCceEEEEeCCCCCcHHHHHHHHHHcCCCEEeceeee
Q 018252 292 FEISLGDT--IGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQVSPMHAKPCFTF 356 (359)
Q Consensus 292 d~I~L~DT--~G~~~P~~v~~lv~~l~~~~p~~~L~~H~HNd~GLAlANalaAv~AGa~~ID~tl~~ 356 (359)
|-|--.-- .+.++|+++..+-+.+....+ ++..-=.+ | ..-+++-+++|+++|-++-..
T Consensus 147 DfvKTsTGf~~~gat~~dv~~m~~~v~~~v~-IKaaGGir-t----~~~a~~~i~aGa~riGts~~~ 207 (211)
T TIGR00126 147 DFVKTSTGFGAGGATVEDVRLMRNTVGDTIG-VKASGGVR-T----AEDAIAMIEAGASRIGASAGV 207 (211)
T ss_pred CEEEeCCCCCCCCCCHHHHHHHHHHhccCCe-EEEeCCCC-C----HHHHHHHHHHhhHHhCcchHH
Confidence 98765422 255788888777776665333 22221122 3 466778889999999887543
No 106
>PRK09197 fructose-bisphosphate aldolase; Provisional
Probab=97.09 E-value=0.12 Score=51.85 Aligned_cols=199 Identities=17% Similarity=0.130 Sum_probs=127.9
Q ss_pred CCCCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcCC--CCC------------HHHHHHHhhhcCCCeEEEEeC---C--
Q 018252 143 NTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQ--LAD------------ARDVMEAVRDLEGARLPVLTP---N-- 203 (359)
Q Consensus 143 ~~~~~~~k~~ia~~L~~aGv~~IEvG~fvspk~vPq--~~D------------~~ev~~~l~~~~~~~l~~l~~---n-- 203 (359)
+.+..+....++++-.++..+.|=-.+...-++.+. +.+ ...++..+.+...+.+..... +
T Consensus 27 Nv~n~e~~~avi~AAee~~sPVIlq~s~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~A~~~~VPValHLDHg~~~~ 106 (350)
T PRK09197 27 NVVGTDSINAVLEGAAEAKSPVIIQFSNGGAAFIAGKGVKDDGQGAAVLGAIAGAKHVHEVAEHYGVPVILHTDHCAKKL 106 (350)
T ss_pred EeCCHHHHHHHHHHHHHHCCCEEEEcChhhHhhcCCccccccchhhhhhhHHHHHHHHHHHHHHCCCCEEEECCCCCCcc
Confidence 457789999999999999999985443221111110 122 112222222223444555443 4
Q ss_pred hHhHHHHHHcC-----------CCEEEEecCCchHHHHhhhcCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCC
Q 018252 204 LKGFEAAIAAG-----------AKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEG 272 (359)
Q Consensus 204 ~~gie~a~~aG-----------v~~V~i~~s~S~~~~~~n~~~t~~e~l~~i~~~i~~Ak~~G~~V~~~is~~fg~~~~~ 272 (359)
.+.+++++++| ...|.+=.| ..+.+|+++.-++++++|+..|+.|.+.|-..=|.++..
T Consensus 107 ~~~i~~ai~~g~~~v~~a~~~gftSVMiDgS----------~lpfEeNI~~TkevVe~Ah~~GvsVEaELG~Igg~Ed~~ 176 (350)
T PRK09197 107 LPWIDGLLDAGEKHFAAGGKPLFSSHMIDLS----------EEPLEENIEICSKYLERMAKAGMTLEIELGVTGGEEDGV 176 (350)
T ss_pred hHHHHHHHHhhHHHHHhcCCCCceeEEeeCC----------CCCHHHHHHHHHHHHHHHHHcCCEEEEEEeccCCCcCCc
Confidence 44566777766 677755333 234688899999999999999999998888654444321
Q ss_pred ----------CCCHHHHHHHHHHHH-HCCcC--EEEEcCCCCCCc---HHHHHHHHHHHHHhC--------CCceEEEEe
Q 018252 273 ----------AIPPSKVAYVAKELH-DMGCF--EISLGDTIGVGT---PGTVVPMLEAVMAVV--------PVEKLAVHL 328 (359)
Q Consensus 273 ----------r~~~e~l~~~a~~l~-~~Gad--~I~L~DT~G~~~---P~~v~~lv~~l~~~~--------p~~~L~~H~ 328 (359)
-++|+...+++++-- ..|+| .|.+.-.=|.-. |.-=.++++.+++.+ +++||.+|+
T Consensus 177 ~~~~~~~~~~~TdPeeA~~Fv~~Tgv~~~~D~LAvaiGt~HG~Yk~~~p~Ld~e~L~~I~~~v~~~~~~~~~~vPLVLHG 256 (350)
T PRK09197 177 DNSHEDNSKLYTQPEDVLYAYEALGKISGRFTIAASFGNVHGVYKPGNVKLRPEILKDSQEYVSKKFGLPAKPFDFVFHG 256 (350)
T ss_pred cccccccccccCCHHHHHHHHHHhCCCCcceEEeeecccccCCcCCCCCccCHHHHHHHHHHHHHhhCCCCCCCCEEEeC
Confidence 378988888877542 13336 355555555543 444456677777665 257888887
Q ss_pred CCCCCcHHHHHHHHHHcCCCEEece
Q 018252 329 HDTYGQSLPNILISLQVSPMHAKPC 353 (359)
Q Consensus 329 HNd~GLAlANalaAv~AGa~~ID~t 353 (359)
=. |+.--....|++.|+.-|+..
T Consensus 257 gS--Gipde~i~~ai~~GI~KINi~ 279 (350)
T PRK09197 257 GS--GSTLEEIREAVSYGVVKMNID 279 (350)
T ss_pred CC--CCCHHHHHHHHHCCCeeEEeC
Confidence 54 888889999999999988764
No 107
>PRK05301 pyrroloquinoline quinone biosynthesis protein PqqE; Provisional
Probab=97.08 E-value=0.11 Score=51.94 Aligned_cols=139 Identities=15% Similarity=0.171 Sum_probs=92.6
Q ss_pred CCCCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcCCCCCHHHHHHHhhhcCCCeEEEEeCC-----hHhHHHHHHcCCCE
Q 018252 143 NTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPVLTPN-----LKGFEAAIAAGAKE 217 (359)
Q Consensus 143 ~~~~~~~k~~ia~~L~~aGv~~IEvG~fvspk~vPq~~D~~ev~~~l~~~~~~~l~~l~~n-----~~gie~a~~aGv~~ 217 (359)
..++.++..++++.+.+.|+..|.++. ..|-.. .|..++++.+++. +..+. ++.| .+-++...+.|++.
T Consensus 44 ~~~~~e~~~~ii~~~~~~g~~~v~~~G-GEPll~---~~~~~il~~~~~~-g~~~~-i~TNG~ll~~~~~~~L~~~g~~~ 117 (378)
T PRK05301 44 AELSTEEWIRVLREARALGALQLHFSG-GEPLLR---KDLEELVAHAREL-GLYTN-LITSGVGLTEARLAALKDAGLDH 117 (378)
T ss_pred CCCCHHHHHHHHHHHHHcCCcEEEEEC-CccCCc---hhHHHHHHHHHHc-CCcEE-EECCCccCCHHHHHHHHHcCCCE
Confidence 358899999999999999998887754 222111 2445555555542 44333 3332 35577777889999
Q ss_pred EEEecCCc--hHHHHhhhcCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHHCCcCEEE
Q 018252 218 VAIFASAS--EAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEIS 295 (359)
Q Consensus 218 V~i~~s~S--~~~~~~n~~~t~~e~l~~i~~~i~~Ak~~G~~V~~~is~~fg~~~~~r~~~e~l~~~a~~l~~~Gad~I~ 295 (359)
|.+.+... +.|... -|. ...++++.+.++.++++|+++.+... + ++...+++.++++.+.+.|++.|.
T Consensus 118 v~iSldg~~~e~~d~i-rg~--~g~f~~~~~~i~~l~~~g~~v~i~~v--v-----~~~N~~~i~~~~~~~~~lgv~~i~ 187 (378)
T PRK05301 118 IQLSFQDSDPELNDRL-AGT--KGAFAKKLAVARLVKAHGYPLTLNAV--I-----HRHNIDQIPRIIELAVELGADRLE 187 (378)
T ss_pred EEEEecCCCHHHHHHH-cCC--CchHHHHHHHHHHHHHCCCceEEEEE--e-----ecCCHHHHHHHHHHHHHcCCCEEE
Confidence 99887553 444432 121 12455666778888999998765443 2 356788899999999999999887
Q ss_pred Ec
Q 018252 296 LG 297 (359)
Q Consensus 296 L~ 297 (359)
+.
T Consensus 188 ~~ 189 (378)
T PRK05301 188 LA 189 (378)
T ss_pred Ee
Confidence 64
No 108
>PRK06806 fructose-bisphosphate aldolase; Provisional
Probab=97.05 E-value=0.17 Score=49.30 Aligned_cols=197 Identities=13% Similarity=0.113 Sum_probs=130.0
Q ss_pred ccCCCCC--CCCCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcCCCCCHHHHHHHhh---hcCCCeEEEEeC---ChHhH
Q 018252 136 DGLQNEK--NTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVR---DLEGARLPVLTP---NLKGF 207 (359)
Q Consensus 136 DG~Q~~~--~~~~~~~k~~ia~~L~~aGv~~IEvG~fvspk~vPq~~D~~ev~~~l~---~~~~~~l~~l~~---n~~gi 207 (359)
.+.+..+ +.+..+....++++-.+.+-+.|=-.+...-+.. ..+.+...+. +...+.+..... +.+.+
T Consensus 15 ~~~yaV~Afn~~n~e~~~avi~aAe~~~~Pvii~~~~~~~~~~----~~~~~~~~~~~~a~~~~vpv~lHlDH~~~~e~i 90 (281)
T PRK06806 15 QENYGVGAFSVANMEMVMGAIKAAEELNSPIILQIAEVRLNHS----PLHLIGPLMVAAAKQAKVPVAVHFDHGMTFEKI 90 (281)
T ss_pred HCCceEEEEEeCCHHHHHHHHHHHHHhCCCEEEEcCcchhccC----ChHHHHHHHHHHHHHCCCCEEEECCCCCCHHHH
Confidence 3444443 4577889999999999999998744432222211 2222222222 222344544443 45778
Q ss_pred HHHHHcCCCEEEEecCCchHHHHhhhcCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCC-------CCCCHHHHH
Q 018252 208 EAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVE-------GAIPPSKVA 280 (359)
Q Consensus 208 e~a~~aGv~~V~i~~s~S~~~~~~n~~~t~~e~l~~i~~~i~~Ak~~G~~V~~~is~~fg~~~~-------~r~~~e~l~ 280 (359)
+.|++.|++.|.+=.+. .+.++.++..++++++|+.+|..+.+.+-. .|..+. +-++|+++.
T Consensus 91 ~~Al~~G~tsVm~d~s~----------~~~~eni~~t~~v~~~a~~~gv~veaE~gh-lG~~d~~~~~~g~s~t~~eea~ 159 (281)
T PRK06806 91 KEALEIGFTSVMFDGSH----------LPLEENIQKTKEIVELAKQYGATVEAEIGR-VGGSEDGSEDIEMLLTSTTEAK 159 (281)
T ss_pred HHHHHcCCCEEEEcCCC----------CCHHHHHHHHHHHHHHHHHcCCeEEEEeee-ECCccCCcccccceeCCHHHHH
Confidence 99999999999985442 356788999999999999999998876664 332221 136777765
Q ss_pred HHHHHHHHCCcCEEEE--cCCCCCC--cHHHHHHHHHHHHHhCCCceEEEEeCCCCCcHHHHHHHHHHcCCCEEece
Q 018252 281 YVAKELHDMGCFEISL--GDTIGVG--TPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQVSPMHAKPC 353 (359)
Q Consensus 281 ~~a~~l~~~Gad~I~L--~DT~G~~--~P~~v~~lv~~l~~~~p~~~L~~H~HNd~GLAlANalaAv~AGa~~ID~t 353 (359)
++++ +.|+|-|.+ .=..|.- .|.-=-++++.+++..+ +||..|+ .-|....|...++++|++-|.+.
T Consensus 160 ~f~~---~tg~DyLAvaiG~~hg~~~~~~~l~~~~L~~i~~~~~-iPlV~hG--~SGI~~e~~~~~i~~G~~kinv~ 230 (281)
T PRK06806 160 RFAE---ETDVDALAVAIGNAHGMYNGDPNLRFDRLQEINDVVH-IPLVLHG--GSGISPEDFKKCIQHGIRKINVA 230 (281)
T ss_pred HHHH---hhCCCEEEEccCCCCCCCCCCCccCHHHHHHHHHhcC-CCEEEEC--CCCCCHHHHHHHHHcCCcEEEEh
Confidence 5554 468998877 5555533 12223356777777765 6888887 34888899999999999998764
No 109
>PRK13361 molybdenum cofactor biosynthesis protein A; Provisional
Probab=97.04 E-value=0.05 Score=53.67 Aligned_cols=136 Identities=17% Similarity=0.107 Sum_probs=92.5
Q ss_pred CCCCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcCCC-CCHHHHHHHhhhcCCCeEEEEeCCh----HhHHHHHHcCCCE
Q 018252 143 NTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQL-ADARDVMEAVRDLEGARLPVLTPNL----KGFEAAIAAGAKE 217 (359)
Q Consensus 143 ~~~~~~~k~~ia~~L~~aGv~~IEvG~fvspk~vPq~-~D~~ev~~~l~~~~~~~l~~l~~n~----~gie~a~~aGv~~ 217 (359)
..++.++..++++.+.+.|++.|-++.. .| -+ .|..++++.+++.++.....++.|- +-++...++|++.
T Consensus 43 ~~ls~eei~~li~~~~~~Gv~~I~~tGG-EP----llr~dl~~li~~i~~~~~l~~i~itTNG~ll~~~~~~L~~aGl~~ 117 (329)
T PRK13361 43 QVLSLEELAWLAQAFTELGVRKIRLTGG-EP----LVRRGCDQLVARLGKLPGLEELSLTTNGSRLARFAAELADAGLKR 117 (329)
T ss_pred CCCCHHHHHHHHHHHHHCCCCEEEEECc-CC----CccccHHHHHHHHHhCCCCceEEEEeChhHHHHHHHHHHHcCCCe
Confidence 3589999999999999999999988652 22 22 3556666767665555334555543 3456667789999
Q ss_pred EEEecCCc--hHHHHhhhcCCHHHHHHHHHHHHHHHHhCCC-cEEEEEeeeecCCCCCCCCHHHHHHHHHHHHHCCcCE
Q 018252 218 VAIFASAS--EAFSKSNINCSIEDSLVRYRAVAHAAKVLSI-PVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFE 293 (359)
Q Consensus 218 V~i~~s~S--~~~~~~n~~~t~~e~l~~i~~~i~~Ak~~G~-~V~~~is~~fg~~~~~r~~~e~l~~~a~~l~~~Gad~ 293 (359)
|.+.+... +.|.+ ++. ...++++.+.++.+++.|+ .+..+.. +. .....+++.++++.+.+.|++.
T Consensus 118 v~ISlDs~~~e~~~~--i~~--~g~~~~vl~~i~~~~~~Gi~~v~in~v--~~----~g~N~~ei~~~~~~~~~~gi~~ 186 (329)
T PRK13361 118 LNISLDTLRPELFAA--LTR--NGRLERVIAGIDAAKAAGFERIKLNAV--IL----RGQNDDEVLDLVEFCRERGLDI 186 (329)
T ss_pred EEEEeccCCHHHhhh--hcC--CCCHHHHHHHHHHHHHcCCCceEEEEE--EE----CCCCHHHHHHHHHHHHhcCCeE
Confidence 99987543 33332 222 2346777788888999998 6655433 21 1246788999999999999874
No 110
>PRK00507 deoxyribose-phosphate aldolase; Provisional
Probab=97.03 E-value=0.09 Score=49.42 Aligned_cols=185 Identities=18% Similarity=0.144 Sum_probs=115.3
Q ss_pred CCCCCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcCCCCCHHHHHHHhhhcCCCeEEEEe--C---Ch-----HhHHHHH
Q 018252 142 KNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPVLT--P---NL-----KGFEAAI 211 (359)
Q Consensus 142 ~~~~~~~~k~~ia~~L~~aGv~~IEvG~fvspk~vPq~~D~~ev~~~l~~~~~~~l~~l~--~---n~-----~gie~a~ 211 (359)
+...+.++..++.+.-.+.|+..+-+- |.++| ...+.++ ..++++.+.+ | +. ...+.|+
T Consensus 16 ~p~~t~~~i~~~~~~A~~~~~~avcv~----p~~v~------~a~~~l~-~~~v~v~tVigFP~G~~~~~~K~~e~~~Ai 84 (221)
T PRK00507 16 KPEATEEDIDKLCDEAKEYGFASVCVN----PSYVK------LAAELLK-GSDVKVCTVIGFPLGANTTAVKAFEAKDAI 84 (221)
T ss_pred CCCCCHHHHHHHHHHHHHhCCeEEEEC----HHHHH------HHHHHhC-CCCCeEEEEecccCCCChHHHHHHHHHHHH
Confidence 346788899999999988888777554 32221 1222332 2356666655 3 21 3577889
Q ss_pred HcCCCEEEEecCCchHHHHhhhcCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHHCCc
Q 018252 212 AAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGC 291 (359)
Q Consensus 212 ~aGv~~V~i~~s~S~~~~~~n~~~t~~e~l~~i~~~i~~Ak~~G~~V~~~is~~fg~~~~~r~~~e~l~~~a~~l~~~Ga 291 (359)
+.|+++|.+.+..+.... | ..++..+.+..+.+.+ .+..+.+-|. ....+.+.+.++++.+.++|+
T Consensus 85 ~~GA~EiD~Vin~~~~~~----g-~~~~v~~ei~~v~~~~--~~~~lKvIlE-------t~~L~~e~i~~a~~~~~~aga 150 (221)
T PRK00507 85 ANGADEIDMVINIGALKS----G-DWDAVEADIRAVVEAA--GGAVLKVIIE-------TCLLTDEEKVKACEIAKEAGA 150 (221)
T ss_pred HcCCceEeeeccHHHhcC----C-CHHHHHHHHHHHHHhc--CCceEEEEee-------cCcCCHHHHHHHHHHHHHhCC
Confidence 999999999877554321 1 2456666666666644 3554443332 124577889999999999999
Q ss_pred CEEEEcCCC--CCCcHHHHHHHHHHHHHhCCCceEEEEeCCCCCcHHHHHHHHHHcCCCEEeceeeec
Q 018252 292 FEISLGDTI--GVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQVSPMHAKPCFTFA 357 (359)
Q Consensus 292 d~I~L~DT~--G~~~P~~v~~lv~~l~~~~p~~~L~~H~HNd~GLAlANalaAv~AGa~~ID~tl~~~ 357 (359)
|-|--.-+. |-.+|+.++-+.+.+...+ ++..-=.- .....++.-+++||++|-+|-..+
T Consensus 151 dfIKTsTG~~~~gat~~~v~~m~~~~~~~~-----~IKasGGI-rt~~~a~~~i~aGA~riGtS~~~~ 212 (221)
T PRK00507 151 DFVKTSTGFSTGGATVEDVKLMRETVGPRV-----GVKASGGI-RTLEDALAMIEAGATRLGTSAGVA 212 (221)
T ss_pred CEEEcCCCCCCCCCCHHHHHHHHHHhCCCc-----eEEeeCCc-CCHHHHHHHHHcCcceEccCcHHH
Confidence 955544443 3466777766665554332 22221111 125678889999999998875543
No 111
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=97.01 E-value=0.029 Score=51.90 Aligned_cols=153 Identities=22% Similarity=0.264 Sum_probs=99.1
Q ss_pred CCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcCCCCCHHHHHHHhh-hcCCCeEE-EEeCChHhHHHHHHcCCCEEEEec
Q 018252 145 VPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVR-DLEGARLP-VLTPNLKGFEAAIAAGAKEVAIFA 222 (359)
Q Consensus 145 ~~~~~k~~ia~~L~~aGv~~IEvG~fvspk~vPq~~D~~ev~~~l~-~~~~~~l~-~l~~n~~gie~a~~aGv~~V~i~~ 222 (359)
.+.++-+++++.|.+.|++.||+++- .| ++.++++.++ +.|+..+= +-+.+.++++.|+++|++-+--
T Consensus 17 ~~~~~a~~~~~al~~gGi~~iEiT~~-t~-------~a~~~I~~l~~~~p~~~vGAGTV~~~e~a~~a~~aGA~FivS-- 86 (196)
T PF01081_consen 17 DDPEDAVPIAEALIEGGIRAIEITLR-TP-------NALEAIEALRKEFPDLLVGAGTVLTAEQAEAAIAAGAQFIVS-- 86 (196)
T ss_dssp SSGGGHHHHHHHHHHTT--EEEEETT-ST-------THHHHHHHHHHHHTTSEEEEES--SHHHHHHHHHHT-SEEEE--
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEecC-Cc-------cHHHHHHHHHHHCCCCeeEEEeccCHHHHHHHHHcCCCEEEC--
Confidence 46788899999999999999999983 22 4555666554 56776663 3345889999999999875432
Q ss_pred CCchHHHHhhhcCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHHCCcCEEEE--cCCC
Q 018252 223 SASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISL--GDTI 300 (359)
Q Consensus 223 s~S~~~~~~n~~~t~~e~l~~i~~~i~~Ak~~G~~V~~~is~~fg~~~~~r~~~e~l~~~a~~l~~~Gad~I~L--~DT~ 300 (359)
+.++ .+++++|+++|+.+..- -.+|.++. .+.++|++.|-| ++.+
T Consensus 87 ---P~~~---------------~~v~~~~~~~~i~~iPG-----------~~TptEi~----~A~~~G~~~vK~FPA~~~ 133 (196)
T PF01081_consen 87 ---PGFD---------------PEVIEYAREYGIPYIPG-----------VMTPTEIM----QALEAGADIVKLFPAGAL 133 (196)
T ss_dssp ---SS-----------------HHHHHHHHHHTSEEEEE-----------ESSHHHHH----HHHHTT-SEEEETTTTTT
T ss_pred ---CCCC---------------HHHHHHHHHcCCcccCC-----------cCCHHHHH----HHHHCCCCEEEEecchhc
Confidence 2222 27789999999976322 23666543 356799998876 3333
Q ss_pred CCCcHHHHHHHHHHHHHhCCCceEEEEeCCCCCcHHHHHHHHHHcCCCEE
Q 018252 301 GVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQVSPMHA 350 (359)
Q Consensus 301 G~~~P~~v~~lv~~l~~~~p~~~L~~H~HNd~GLAlANalaAv~AGa~~I 350 (359)
|- ..+++.++.-+|++++-. +=|....|.-.=+++|+..+
T Consensus 134 GG------~~~ik~l~~p~p~~~~~p----tGGV~~~N~~~~l~ag~~~v 173 (196)
T PF01081_consen 134 GG------PSYIKALRGPFPDLPFMP----TGGVNPDNLAEYLKAGAVAV 173 (196)
T ss_dssp TH------HHHHHHHHTTTTT-EEEE----BSS--TTTHHHHHTSTTBSE
T ss_pred Cc------HHHHHHHhccCCCCeEEE----cCCCCHHHHHHHHhCCCEEE
Confidence 31 367888888888876654 33555568888888887544
No 112
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=96.96 E-value=0.11 Score=47.17 Aligned_cols=158 Identities=21% Similarity=0.215 Sum_probs=106.4
Q ss_pred CCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcCCCCCHHHHHHHhh-hcCCCeEEE-EeCChHhHHHHHHcCCCEEEEec
Q 018252 145 VPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVR-DLEGARLPV-LTPNLKGFEAAIAAGAKEVAIFA 222 (359)
Q Consensus 145 ~~~~~k~~ia~~L~~aGv~~IEvG~fvspk~vPq~~D~~ev~~~l~-~~~~~~l~~-l~~n~~gie~a~~aGv~~V~i~~ 222 (359)
.+.++-+++++.|.+.|++.||+..- ++ +..+.++.++ ..+++.+-+ .+-+..+++.++++|.+.++...
T Consensus 13 ~~~~~~~~~~~~l~~~G~~~vev~~~-~~-------~~~~~i~~l~~~~~~~~iGag~v~~~~~~~~a~~~Ga~~i~~p~ 84 (190)
T cd00452 13 DDAEDALALAEALIEGGIRAIEITLR-TP-------GALEAIRALRKEFPEALIGAGTVLTPEQADAAIAAGAQFIVSPG 84 (190)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEeCC-Ch-------hHHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHHcCCCEEEcCC
Confidence 35888999999999999999999962 21 2233444444 345555433 34567899999999999887422
Q ss_pred CCchHHHHhhhcCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHHCCcCEEEEcCCCCC
Q 018252 223 SASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGV 302 (359)
Q Consensus 223 s~S~~~~~~n~~~t~~e~l~~i~~~i~~Ak~~G~~V~~~is~~fg~~~~~r~~~e~l~~~a~~l~~~Gad~I~L~DT~G~ 302 (359)
. + .+++++++.+|..+. .| ..+++++ ..+.++|+|.|.+ +..
T Consensus 85 ~--~------------------~~~~~~~~~~~~~~i------~g-----v~t~~e~----~~A~~~Gad~i~~-~p~-- 126 (190)
T cd00452 85 L--D------------------PEVVKAANRAGIPLL------PG-----VATPTEI----MQALELGADIVKL-FPA-- 126 (190)
T ss_pred C--C------------------HHHHHHHHHcCCcEE------CC-----cCCHHHH----HHHHHCCCCEEEE-cCC--
Confidence 1 1 256778888888762 22 2365553 3445799999998 433
Q ss_pred CcHHHHHHHHHHHHHhCCCceEEEEeCCCCCcHHHHHHHHHHcCCCEEecee
Q 018252 303 GTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQVSPMHAKPCF 354 (359)
Q Consensus 303 ~~P~~v~~lv~~l~~~~p~~~L~~H~HNd~GLAlANalaAv~AGa~~ID~tl 354 (359)
.|. -.++++.++..+|.+++..=+ |.-..|+...+++||+.|-++-
T Consensus 127 -~~~-g~~~~~~l~~~~~~~p~~a~G----GI~~~n~~~~~~~G~~~v~v~s 172 (190)
T cd00452 127 -EAV-GPAYIKALKGPFPQVRFMPTG----GVSLDNAAEWLAAGVVAVGGGS 172 (190)
T ss_pred -ccc-CHHHHHHHHhhCCCCeEEEeC----CCCHHHHHHHHHCCCEEEEEch
Confidence 232 455677777777766665544 5556899999999998876543
No 113
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=96.96 E-value=0.15 Score=47.32 Aligned_cols=150 Identities=29% Similarity=0.340 Sum_probs=105.6
Q ss_pred CCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcCCCCCHHHHHHHhh-hcCCCeE-EEEeCChHhHHHHHHcCCCEEEEec
Q 018252 145 VPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVR-DLEGARL-PVLTPNLKGFEAAIAAGAKEVAIFA 222 (359)
Q Consensus 145 ~~~~~k~~ia~~L~~aGv~~IEvG~fvspk~vPq~~D~~ev~~~l~-~~~~~~l-~~l~~n~~gie~a~~aGv~~V~i~~ 222 (359)
.+.++-+++++.|.+.|++.||+++- .| ++.+.++.++ +.+++.+ .+-+-+.++++.++++|.+-+-
T Consensus 13 ~~~~~a~~ia~al~~gGi~~iEit~~-tp-------~a~~~I~~l~~~~~~~~vGAGTVl~~e~a~~ai~aGA~Fiv--- 81 (201)
T PRK06015 13 DDVEHAVPLARALAAGGLPAIEITLR-TP-------AALDAIRAVAAEVEEAIVGAGTILNAKQFEDAAKAGSRFIV--- 81 (201)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEeCC-Cc-------cHHHHHHHHHHHCCCCEEeeEeCcCHHHHHHHHHcCCCEEE---
Confidence 47899999999999999999999983 33 3445555554 4566555 2334588999999999977432
Q ss_pred CCchHHHHhhhcCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHHCCcCEEEEcCCCCC
Q 018252 223 SASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGV 302 (359)
Q Consensus 223 s~S~~~~~~n~~~t~~e~l~~i~~~i~~Ak~~G~~V~~~is~~fg~~~~~r~~~e~l~~~a~~l~~~Gad~I~L~DT~G~ 302 (359)
|+.+. .+++++|+++|+.+. -+-.+|.++. .+.++|++.|-|
T Consensus 82 --SP~~~---------------~~vi~~a~~~~i~~i-----------PG~~TptEi~----~A~~~Ga~~vK~------ 123 (201)
T PRK06015 82 --SPGTT---------------QELLAAANDSDVPLL-----------PGAATPSEVM----ALREEGYTVLKF------ 123 (201)
T ss_pred --CCCCC---------------HHHHHHHHHcCCCEe-----------CCCCCHHHHH----HHHHCCCCEEEE------
Confidence 22221 267889999999762 1345776644 366799998876
Q ss_pred CcHHHH---HHHHHHHHHhCCCceEEEEeCCCCCcHHHHHHHHHHcCCC
Q 018252 303 GTPGTV---VPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQVSPM 348 (359)
Q Consensus 303 ~~P~~v---~~lv~~l~~~~p~~~L~~H~HNd~GLAlANalaAv~AGa~ 348 (359)
-|... ..+++.++.-+|++++- -+=|....|.-.=+++|+.
T Consensus 124 -FPa~~~GG~~yikal~~plp~~~l~----ptGGV~~~n~~~~l~ag~~ 167 (201)
T PRK06015 124 -FPAEQAGGAAFLKALSSPLAGTFFC----PTGGISLKNARDYLSLPNV 167 (201)
T ss_pred -CCchhhCCHHHHHHHHhhCCCCcEE----ecCCCCHHHHHHHHhCCCe
Confidence 34322 26788888888887665 3557777898888888654
No 114
>TIGR02109 PQQ_syn_pqqE coenzyme PQQ biosynthesis protein E. This model describes coenzyme PQQ biosynthesis protein E, a gene required for the biosynthesis of pyrrolo-quinoline-quinone (coenzyme PQQ). PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases.
Probab=96.95 E-value=0.099 Score=51.82 Aligned_cols=139 Identities=14% Similarity=0.176 Sum_probs=94.4
Q ss_pred CCCCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcCCCCCHHHHHHHhhhcCCCeEEEEeC----ChHhHHHHHHcCCCEE
Q 018252 143 NTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPVLTP----NLKGFEAAIAAGAKEV 218 (359)
Q Consensus 143 ~~~~~~~k~~ia~~L~~aGv~~IEvG~fvspk~vPq~~D~~ev~~~l~~~~~~~l~~l~~----n~~gie~a~~aGv~~V 218 (359)
..++.++..++++.+.+.|+..|.++. ..|-.. .|..++++.+++. +..+...+- +.+-++...++|++.|
T Consensus 35 ~~l~~e~~~~ii~~~~~~g~~~v~~~G-GEPll~---~~~~~ii~~~~~~-g~~~~l~TNG~ll~~e~~~~L~~~g~~~v 109 (358)
T TIGR02109 35 AELTTEEWTDVLTQAAELGVLQLHFSG-GEPLAR---PDLVELVAHARRL-GLYTNLITSGVGLTEARLDALADAGLDHV 109 (358)
T ss_pred CCCCHHHHHHHHHHHHhcCCcEEEEeC-cccccc---ccHHHHHHHHHHc-CCeEEEEeCCccCCHHHHHHHHhCCCCEE
Confidence 458999999999999999999888764 222211 2455666666542 444333321 2345777778899999
Q ss_pred EEecCCc--hHHHHhhhcCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHHCCcCEEEE
Q 018252 219 AIFASAS--EAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISL 296 (359)
Q Consensus 219 ~i~~s~S--~~~~~~n~~~t~~e~l~~i~~~i~~Ak~~G~~V~~~is~~fg~~~~~r~~~e~l~~~a~~l~~~Gad~I~L 296 (359)
.+.+... +.|.+ ++. ....++++.+.++.++++|+.+.+.+. . ++...+++.++++.+.+.|++.+.+
T Consensus 110 ~iSldg~~~e~~d~--~rg-~~g~f~~v~~~i~~l~~~g~~v~v~~v--v-----~~~N~~~l~~~~~~~~~lg~~~i~~ 179 (358)
T TIGR02109 110 QLSFQGVDEALADR--IAG-YKNAFEQKLAMARAVKAAGLPLTLNFV--I-----HRHNIDQIPEIIELAIELGADRVEL 179 (358)
T ss_pred EEeCcCCCHHHHHH--hcC-CccHHHHHHHHHHHHHhCCCceEEEEE--e-----ccCCHHHHHHHHHHHHHcCCCEEEE
Confidence 9877543 34543 221 234567777888889999998755443 2 2567788999999999999998876
No 115
>TIGR00510 lipA lipoate synthase. The family shows strong sequence conservation.
Probab=96.95 E-value=0.047 Score=53.70 Aligned_cols=157 Identities=16% Similarity=0.180 Sum_probs=103.4
Q ss_pred CCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcCC--CCCHHHHHHHhhh-cCCCeEEEEeCCh----HhHHHHHHcCCCE
Q 018252 145 VPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQ--LADARDVMEAVRD-LEGARLPVLTPNL----KGFEAAIAAGAKE 217 (359)
Q Consensus 145 ~~~~~k~~ia~~L~~aGv~~IEvG~fvspk~vPq--~~D~~ev~~~l~~-~~~~~l~~l~~n~----~gie~a~~aGv~~ 217 (359)
.++++-+++++.+.+.|+++|-+.+...+++ +. .....++++.+++ .+++++-++++.. +.++...++|.+.
T Consensus 91 ~~~eei~~~a~~~~~~GlkevvLTsv~~ddl-~d~g~~~l~~li~~I~~~~p~i~Ievl~~d~~g~~e~l~~l~~aG~dv 169 (302)
T TIGR00510 91 PDPEEPAKLAETIKDMGLKYVVITSVDRDDL-EDGGASHLAECIEAIREKLPNIKIETLVPDFRGNIAALDILLDAPPDV 169 (302)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEEeecCCCc-ccccHHHHHHHHHHHHhcCCCCEEEEeCCcccCCHHHHHHHHHcCchh
Confidence 4578899999999999999998876433221 11 1123445555554 4788888888743 4577778899998
Q ss_pred EEEecCCch-HHHHhhhcCCHHHHHHHHHHHHHHHHhC--CCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHHCCcCEE
Q 018252 218 VAIFASASE-AFSKSNINCSIEDSLVRYRAVAHAAKVL--SIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEI 294 (359)
Q Consensus 218 V~i~~s~S~-~~~~~n~~~t~~e~l~~i~~~i~~Ak~~--G~~V~~~is~~fg~~~~~r~~~e~l~~~a~~l~~~Gad~I 294 (359)
+...+-+++ .+...+-+.+.++ ..++++.|++. |+.+...++.-|| . +.+++.+..+.+.+.|++.+
T Consensus 170 ~~hnlEt~~~l~~~vrr~~t~e~----~Le~l~~ak~~~pgi~~~TgiIVGlG-----E-Teee~~etl~~Lrelg~d~v 239 (302)
T TIGR00510 170 YNHNLETVERLTPFVRPGATYRW----SLKLLERAKEYLPNLPTKSGIMVGLG-----E-TNEEIKQTLKDLRDHGVTMV 239 (302)
T ss_pred hcccccchHHHHHHhCCCCCHHH----HHHHHHHHHHhCCCCeecceEEEECC-----C-CHHHHHHHHHHHHhcCCCEE
Confidence 776553443 3333333345544 44677777887 7877777774442 1 66889999999999999988
Q ss_pred EEcC----------CCCCCcHHHHHHHH
Q 018252 295 SLGD----------TIGVGTPGTVVPML 312 (359)
Q Consensus 295 ~L~D----------T~G~~~P~~v~~lv 312 (359)
.+.= ...+-+|+++..+=
T Consensus 240 ~igqYl~p~~~~~~v~~~~~p~~f~~~~ 267 (302)
T TIGR00510 240 TLGQYLRPSRRHLPVKRYVSPEEFDYYR 267 (302)
T ss_pred EeecccCCCCCCCccccCCCHHHHHHHH
Confidence 7652 23344566655543
No 116
>TIGR01496 DHPS dihydropteroate synthase. This model represents dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis. The gene is usually designated folP (folic acid biosynthsis) or sul (sulfanilamide resistance). This model represents one branch of the family of pterin-binding enzymes (pfam00809) and of a cluster of dihydropteroate synthase and related enzymes (COG0294). Other members of pfam00809 and COG0294 are represented by TIGR00284.
Probab=96.90 E-value=0.27 Score=47.17 Aligned_cols=190 Identities=17% Similarity=0.196 Sum_probs=110.0
Q ss_pred CCCCCCCCHHHHHHHHHHHHhCCCCEEEEecc-CCCCCcCCCCCHHH---HHHHhhh---cCCCeEEEEeCChHhHHHHH
Q 018252 139 QNEKNTVPTGVKVELIRRLVSSGLPVVEATSF-VSPKWVPQLADARD---VMEAVRD---LEGARLPVLTPNLKGFEAAI 211 (359)
Q Consensus 139 Q~~~~~~~~~~k~~ia~~L~~aGv~~IEvG~f-vspk~vPq~~D~~e---v~~~l~~---~~~~~l~~l~~n~~gie~a~ 211 (359)
+--+..++++.-++.++.+.+.|.+.|++|.. ..|.. ++....+| +...++. ..++.++.=+.+.+-++.|+
T Consensus 14 ~dg~~~~~~~~~~~~a~~~~~~GA~iIDIG~~st~p~~-~~i~~~~E~~rl~~~v~~~~~~~~~plsiDT~~~~vi~~al 92 (257)
T TIGR01496 14 SDGGRFLSVDKAVAHAERMLEEGADIIDVGGESTRPGA-DRVSPEEELNRVVPVIKALRDQPDVPISVDTYRAEVARAAL 92 (257)
T ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCC-CCCCHHHHHHHHHHHHHHHHhcCCCeEEEeCCCHHHHHHHH
Confidence 33356678999999999999999999999953 33432 12222223 3333332 23666666677889999999
Q ss_pred HcCCCEEEEecCCchHHHHhhhcCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCC----------CHHHHHH
Q 018252 212 AAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAI----------PPSKVAY 281 (359)
Q Consensus 212 ~aGv~~V~i~~s~S~~~~~~n~~~t~~e~l~~i~~~i~~Ak~~G~~V~~~is~~fg~~~~~r~----------~~e~l~~ 281 (359)
++|++.|.=.... . ..++++.++++|..+.+ +..-+.|..... -.+++.+
T Consensus 93 ~~G~~iINsis~~-----------~-------~~~~~~l~~~~~~~vV~--m~~~g~p~~~~~~~~~~~~~~~~~~~~~~ 152 (257)
T TIGR01496 93 EAGADIINDVSGG-----------Q-------DPAMLEVAAEYGVPLVL--MHMRGTPRTMQENPHYEDVVEEVLRFLEA 152 (257)
T ss_pred HcCCCEEEECCCC-----------C-------CchhHHHHHHcCCcEEE--EeCCCCCcccccCCCcccHHHHHHHHHHH
Confidence 9998876532110 0 01344556778887744 222232221100 1134566
Q ss_pred HHHHHHHCCcC--EEEEcCC-CCCC-cHHHHHHHHHHHHHh----CCCceEEE------------EeCCCCCcHHHHHHH
Q 018252 282 VAKELHDMGCF--EISLGDT-IGVG-TPGTVVPMLEAVMAV----VPVEKLAV------------HLHDTYGQSLPNILI 341 (359)
Q Consensus 282 ~a~~l~~~Gad--~I~L~DT-~G~~-~P~~v~~lv~~l~~~----~p~~~L~~------------H~HNd~GLAlANala 341 (359)
.++.+.+.|++ .|.| |. +|.. ++.+-.++++.++.- +| +-+++ -..+..+..++.+..
T Consensus 153 ~i~~~~~~Gi~~~~iil-DPg~gf~ks~~~~~~~l~~i~~l~~~~~p-~l~G~SrkSfig~v~~~~~~~r~~~t~~~~~~ 230 (257)
T TIGR01496 153 RAEELVAAGVAAERIIL-DPGIGFGKTPEHNLELLKHLEEFVALGYP-LLVGASRKSFIGALLGTPPEERLEGTLAASAY 230 (257)
T ss_pred HHHHHHHcCCCHHHEEE-ECCCCcccCHHHHHHHHHHHHHHHhCCCc-EEEEecccHHHHhhcCCChhhhhHHHHHHHHH
Confidence 66778889984 4554 44 3322 344445555554431 23 22333 223444556677778
Q ss_pred HHHcCCCEEe
Q 018252 342 SLQVSPMHAK 351 (359)
Q Consensus 342 Av~AGa~~ID 351 (359)
|++.||++|=
T Consensus 231 a~~~Ga~iiR 240 (257)
T TIGR01496 231 AVQKGADIVR 240 (257)
T ss_pred HHHcCCCEEE
Confidence 9999999874
No 117
>PRK05926 hypothetical protein; Provisional
Probab=96.90 E-value=0.086 Score=53.24 Aligned_cols=196 Identities=12% Similarity=0.068 Sum_probs=121.6
Q ss_pred CCCCCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcCCCCCHHHHHHHhhh-cCCCeEEEEeC-------------ChHhH
Q 018252 142 KNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRD-LEGARLPVLTP-------------NLKGF 207 (359)
Q Consensus 142 ~~~~~~~~k~~ia~~L~~aGv~~IEvG~fvspk~vPq~~D~~ev~~~l~~-~~~~~l~~l~~-------------n~~gi 207 (359)
...++.++.++.++.. +.|+..|-+-....|.. .+....++++.+++ .|++.+.++++ ..+.+
T Consensus 96 ~~~ls~eeI~~~a~~a-~~G~~ei~iv~G~~p~~--~~e~~~e~i~~Ik~~~p~i~i~a~s~~Ei~~~~~~~~~~~~e~l 172 (370)
T PRK05926 96 GWFYTPDQLVQSIKEN-PSPITETHIVAGCFPSC--NLAYYEELFSKIKQNFPDLHIKALTAIEYAYLSKLDNLPVKEVL 172 (370)
T ss_pred cccCCHHHHHHHHHHH-hcCCCEEEEEeCcCCCC--CHHHHHHHHHHHHHhCCCeeEEECCHHHHHHHHhhcCCCHHHHH
Confidence 4568999999999998 79999887765444431 01122334455553 47788777753 12347
Q ss_pred HHHHHcCCCEEEEe-c-CCch-HHHHhhh-cCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHH
Q 018252 208 EAAIAAGAKEVAIF-A-SASE-AFSKSNI-NCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVA 283 (359)
Q Consensus 208 e~a~~aGv~~V~i~-~-s~S~-~~~~~n~-~~t~~e~l~~i~~~i~~Ak~~G~~V~~~is~~fg~~~~~r~~~e~l~~~a 283 (359)
++..++|++.+..- . ..++ +..+..- .++.+ ...++++.|+++|+++...+. ||- -=++++.++.+
T Consensus 173 ~~LkeAGl~~~~g~GaEi~~e~~r~~~~p~~~t~~----e~l~~i~~a~~~Gi~~~sgmi--~G~----gEt~edrv~~l 242 (370)
T PRK05926 173 QTLKIAGLDSIPGGGAEILVDEIRETLAPGRLSSQ----GFLEIHKTAHSLGIPSNATML--CYH----RETPEDIVTHM 242 (370)
T ss_pred HHHHHcCcCccCCCCchhcCHHHHHhhCCCCCCHH----HHHHHHHHHHHcCCcccCceE--EeC----CCCHHHHHHHH
Confidence 88888999876642 1 1111 2211111 23443 345888999999999876643 552 22778888888
Q ss_pred HHHHHCCcCE-----EEE-----cCCC--------CCCcHHHHHHHHHHHH---HhCCCceEEEEeCCCCCcHHHHHHHH
Q 018252 284 KELHDMGCFE-----ISL-----GDTI--------GVGTPGTVVPMLEAVM---AVVPVEKLAVHLHDTYGQSLPNILIS 342 (359)
Q Consensus 284 ~~l~~~Gad~-----I~L-----~DT~--------G~~~P~~v~~lv~~l~---~~~p~~~L~~H~HNd~GLAlANalaA 342 (359)
..+.+.+.+. +.. .+|- +..++.+..++++-.| .++|.++..| +.+ |..-+..|
T Consensus 243 ~~Lr~Lq~~t~gf~~fIp~~f~~~~t~l~~~~~~~~~~~~~~~lr~~AvaRl~l~n~~~iqa~w---~~~--G~~~~q~~ 317 (370)
T PRK05926 243 SKLRALQDKTSGFKNFILLKFASENNALGKRLRKMGSRHSIPPASIIAVARLFLDNFPNIKALW---NYL--GIEVALHL 317 (370)
T ss_pred HHHHhcCCccCCeeeeEecccCCCCCcccccccccCCCChHHHHHHHHHHHHhcCCCcccccCc---hhc--CHHHHHHH
Confidence 8888876652 221 2332 1245555555554333 3456666666 333 55677899
Q ss_pred HHcCCCEEeceee
Q 018252 343 LQVSPMHAKPCFT 355 (359)
Q Consensus 343 v~AGa~~ID~tl~ 355 (359)
+.+||+-+++|++
T Consensus 318 L~~GanD~ggt~~ 330 (370)
T PRK05926 318 LSCGANDLSSTHQ 330 (370)
T ss_pred HhCCCccCccccc
Confidence 9999999999985
No 118
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=96.89 E-value=0.014 Score=54.47 Aligned_cols=190 Identities=15% Similarity=0.143 Sum_probs=110.2
Q ss_pred CCCCCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcCCC-CCHHHHHHHhhhcC-CCeEEEEe-C---ChHhHHHHHHcCC
Q 018252 142 KNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQL-ADARDVMEAVRDLE-GARLPVLT-P---NLKGFEAAIAAGA 215 (359)
Q Consensus 142 ~~~~~~~~k~~ia~~L~~aGv~~IEvG~fvspk~vPq~-~D~~ev~~~l~~~~-~~~l~~l~-~---n~~gie~a~~aGv 215 (359)
+...+.++-.++++.+.+.|++.+-+-...-+...+.+ .+.. .+.... .+.+.... + -...++.+++.|+
T Consensus 15 ~p~~~~~d~~~~~~~~~~~g~~av~v~~~~~~~~~~~~~~~~~----~i~~~~~~~~i~~p~~~~~~~~~~v~~a~~~Ga 90 (235)
T cd00958 15 GPNPGLEDPEETVKLAAEGGADAVALTKGIARAYGREYAGDIP----LIVKLNGSTSLSPKDDNDKVLVASVEDAVRLGA 90 (235)
T ss_pred CCCccccCHHHHHHHHHhcCCCEEEeChHHHHhcccccCCCCc----EEEEECCCCCCCCCCCCchhhhcCHHHHHHCCC
Confidence 44567778889999999999999977632111000000 0000 000000 01110001 1 1145889999999
Q ss_pred CEEEEecCCchHHHHhhhcCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHHCCcCEEE
Q 018252 216 KEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEIS 295 (359)
Q Consensus 216 ~~V~i~~s~S~~~~~~n~~~t~~e~l~~i~~~i~~Ak~~G~~V~~~is~~fg~~~~~r~~~e~l~~~a~~l~~~Gad~I~ 295 (359)
+.|.+.+..... ...+.++.+.++.+.+++.|+++.+... ..|.......+++.+...++.+.++|+|-|.
T Consensus 91 ~~v~~~~~~~~~--------~~~~~~~~i~~v~~~~~~~g~~~iie~~-~~g~~~~~~~~~~~i~~~~~~a~~~GaD~Ik 161 (235)
T cd00958 91 DAVGVTVYVGSE--------EEREMLEELARVAAEAHKYGLPLIAWMY-PRGPAVKNEKDPDLIAYAARIGAELGADIVK 161 (235)
T ss_pred CEEEEEEecCCc--------hHHHHHHHHHHHHHHHHHcCCCEEEEEe-ccCCcccCccCHHHHHHHHHHHHHHCCCEEE
Confidence 988554322111 1356788899999999999999865432 1121111124566777778889999999999
Q ss_pred EcCCCCCCcHHHHHHHHHHHHHhCCCceEEEEeC---CCCCcHHHHHHHHHHcCCCEEec
Q 018252 296 LGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLH---DTYGQSLPNILISLQVSPMHAKP 352 (359)
Q Consensus 296 L~DT~G~~~P~~v~~lv~~l~~~~p~~~L~~H~H---Nd~GLAlANalaAv~AGa~~ID~ 352 (359)
+.=|. .++.++ .+.+..| +|+-+=+. +|..-.+.|+-.++++||+.|-.
T Consensus 162 ~~~~~---~~~~~~----~i~~~~~-~pvv~~GG~~~~~~~~~l~~~~~~~~~Ga~gv~v 213 (235)
T cd00958 162 TKYTG---DAESFK----EVVEGCP-VPVVIAGGPKKDSEEEFLKMVYDAMEAGAAGVAV 213 (235)
T ss_pred ecCCC---CHHHHH----HHHhcCC-CCEEEeCCCCCCCHHHHHHHHHHHHHcCCcEEEe
Confidence 85332 344444 4444443 23333232 45555789999999999998754
No 119
>COG2896 MoaA Molybdenum cofactor biosynthesis enzyme [Coenzyme metabolism]
Probab=96.87 E-value=0.22 Score=49.45 Aligned_cols=145 Identities=19% Similarity=0.120 Sum_probs=106.5
Q ss_pred CCCCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcCCC-CCHHHHHHHhhhcCCCeEEEEeCCh----HhHHHHHHcCCCE
Q 018252 143 NTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQL-ADARDVMEAVRDLEGARLPVLTPNL----KGFEAAIAAGAKE 217 (359)
Q Consensus 143 ~~~~~~~k~~ia~~L~~aGv~~IEvG~fvspk~vPq~-~D~~ev~~~l~~~~~~~l~~l~~n~----~gie~a~~aGv~~ 217 (359)
..++.++..++++...+.|++.|-++..- |-+ .|..++.+.+++. +..-.+++.|- +-.+...+||+++
T Consensus 41 ~~Ls~eei~~~~~~~~~~Gv~kvRlTGGE-----PllR~dl~eIi~~l~~~-~~~~islTTNG~~L~~~a~~Lk~AGl~r 114 (322)
T COG2896 41 ELLSLEEIRRLVRAFAELGVEKVRLTGGE-----PLLRKDLDEIIARLARL-GIRDLSLTTNGVLLARRAADLKEAGLDR 114 (322)
T ss_pred ccCCHHHHHHHHHHHHHcCcceEEEeCCC-----chhhcCHHHHHHHHhhc-ccceEEEecchhhHHHHHHHHHHcCCcE
Confidence 36899999999999999999999997631 222 5777777777766 56667888875 4556677899999
Q ss_pred EEEecCCchHHHHhhhcCCHHHHHHHHHHHHHHHHhCCCc-EEEEEeeeecCCCCCCCCHHHHHHHHHHHHHCCcC--EE
Q 018252 218 VAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIP-VRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCF--EI 294 (359)
Q Consensus 218 V~i~~s~S~~~~~~n~~~t~~e~l~~i~~~i~~Ak~~G~~-V~~~is~~fg~~~~~r~~~e~l~~~a~~l~~~Gad--~I 294 (359)
|++.+.+-+.-....+. ....++++.+-+++|.+.|+. |..+.- .- -..+.+++.++++-+.+.|+. -|
T Consensus 115 VNVSLDsld~e~f~~IT--~~~~~~~Vl~GI~~A~~~Gl~pVKlN~V--v~----kgvNd~ei~~l~e~~~~~~~~lrfI 186 (322)
T COG2896 115 VNVSLDSLDPEKFRKIT--GRDRLDRVLEGIDAAVEAGLTPVKLNTV--LM----KGVNDDEIEDLLEFAKERGAQLRFI 186 (322)
T ss_pred EEeecccCCHHHHHHHh--CCCcHHHHHHHHHHHHHcCCCceEEEEE--Ee----cCCCHHHHHHHHHHHhhcCCceEEE
Confidence 99987554443333332 223378888999999999995 766553 21 126888999999999999975 47
Q ss_pred EEcCCCC
Q 018252 295 SLGDTIG 301 (359)
Q Consensus 295 ~L~DT~G 301 (359)
-+.|+-.
T Consensus 187 E~m~~g~ 193 (322)
T COG2896 187 ELMPLGE 193 (322)
T ss_pred EEeecCc
Confidence 7777664
No 120
>PLN02951 Molybderin biosynthesis protein CNX2
Probab=96.85 E-value=0.12 Score=52.04 Aligned_cols=163 Identities=17% Similarity=0.127 Sum_probs=104.4
Q ss_pred CCCCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcCCC-CCHHHHHHHhhhcCCCeEEEEeCCh----HhHHHHHHcCCCE
Q 018252 143 NTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQL-ADARDVMEAVRDLEGARLPVLTPNL----KGFEAAIAAGAKE 217 (359)
Q Consensus 143 ~~~~~~~k~~ia~~L~~aGv~~IEvG~fvspk~vPq~-~D~~ev~~~l~~~~~~~l~~l~~n~----~gie~a~~aGv~~ 217 (359)
..++.++..++++.+.+.|++.|-++.. . |.+ .|..++++.++..++.....++.|- +.++...++|++.
T Consensus 88 ~~ls~eei~~~i~~~~~~Gv~~I~~tGG-E----Pllr~dl~eli~~l~~~~gi~~i~itTNG~lL~~~~~~L~~aGld~ 162 (373)
T PLN02951 88 HLLSQDEIVRLAGLFVAAGVDKIRLTGG-E----PTLRKDIEDICLQLSSLKGLKTLAMTTNGITLSRKLPRLKEAGLTS 162 (373)
T ss_pred ccCCHHHHHHHHHHHHHCCCCEEEEECC-C----CcchhhHHHHHHHHHhcCCCceEEEeeCcchHHHHHHHHHhCCCCe
Confidence 3589999999999999999999987652 2 222 2556677777766676545555542 4567777899999
Q ss_pred EEEecCCc--hHHHHhhhcCCHHHHHHHHHHHHHHHHhCCC-cEEEEEeeeecCCCCCCCCHHHHHHHHHHHHHCCcCE-
Q 018252 218 VAIFASAS--EAFSKSNINCSIEDSLVRYRAVAHAAKVLSI-PVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFE- 293 (359)
Q Consensus 218 V~i~~s~S--~~~~~~n~~~t~~e~l~~i~~~i~~Ak~~G~-~V~~~is~~fg~~~~~r~~~e~l~~~a~~l~~~Gad~- 293 (359)
|.+.+... +.|....-+.. ++.+.+.++.|++.|+ .+.+++...- ..+.+++.++++.+.+.|+..
T Consensus 163 VnISLDsl~~e~~~~itr~~~----~~~vl~~I~~a~~~G~~~vkin~vv~~------g~N~~Ei~~li~~a~~~gi~vr 232 (373)
T PLN02951 163 LNISLDTLVPAKFEFLTRRKG----HDRVLESIDTAIELGYNPVKVNCVVMR------GFNDDEICDFVELTRDKPINVR 232 (373)
T ss_pred EEEeeccCCHHHHHHHhcCCC----HHHHHHHHHHHHHcCCCcEEEEEEecC------CCCHHHHHHHHHHHHhCCCeEE
Confidence 99987543 33332211122 4667778888888897 4655443111 246678999999998888652
Q ss_pred -EEEcCCCCCCc----HHHHHHHHHHHHHhCC
Q 018252 294 -ISLGDTIGVGT----PGTVVPMLEAVMAVVP 320 (359)
Q Consensus 294 -I~L~DT~G~~~----P~~v~~lv~~l~~~~p 320 (359)
|.+--..|... .....++++.+.+.+|
T Consensus 233 ~ie~mP~~~~~~~~~~~~~~~ei~~~l~~~~~ 264 (373)
T PLN02951 233 FIEFMPFDGNVWNVKKLVPYAEMMDRIEQRFP 264 (373)
T ss_pred EEEcccCCCCccccccCCCHHHHHHHHHHhcC
Confidence 44444333211 1235677777777665
No 121
>COG0320 LipA Lipoate synthase [Coenzyme metabolism]
Probab=96.83 E-value=0.05 Score=52.67 Aligned_cols=168 Identities=21% Similarity=0.263 Sum_probs=109.6
Q ss_pred CcccCCCCCCCCCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcCCCCC-----HHHHHHHhhh-cCCCeEEEEeCChHh-
Q 018252 134 PRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLAD-----ARDVMEAVRD-LEGARLPVLTPNLKG- 206 (359)
Q Consensus 134 LRDG~Q~~~~~~~~~~k~~ia~~L~~aGv~~IEvG~fvspk~vPq~~D-----~~ev~~~l~~-~~~~~l~~l~~n~~g- 206 (359)
+-|-.......+.+++-.++|+...++|++++-+++-...+ +.| ..++++.+++ .|++.+-+|+|+..|
T Consensus 86 FC~V~~g~P~~lD~~EP~rvAeaV~~mgLkyVViTsVdRDD----L~DGGA~hfa~~i~~Ire~~P~t~iEvL~PDF~G~ 161 (306)
T COG0320 86 FCDVKTGRPNPLDPDEPERVAEAVKDMGLKYVVITSVDRDD----LPDGGAQHFAECIRAIRELNPQTTIEVLTPDFRGN 161 (306)
T ss_pred ccccCCCCCCCCCCchHHHHHHHHHHhCCCeEEEEeecccc----ccccchHHHHHHHHHHHhhCCCceEEEeCccccCC
Confidence 33333444677999999999999999999999999855433 222 2445666664 588999999997654
Q ss_pred ---HHHHHHcCCCEEEEe-cCCchHHHHhhhcCCHHHHHHHHHHHHHHHHhCC--CcEEEEEeeeecCCCCCCCCHHHHH
Q 018252 207 ---FEAAIAAGAKEVAIF-ASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLS--IPVRGYVSCVVGCPVEGAIPPSKVA 280 (359)
Q Consensus 207 ---ie~a~~aGv~~V~i~-~s~S~~~~~~n~~~t~~e~l~~i~~~i~~Ak~~G--~~V~~~is~~fg~~~~~r~~~e~l~ 280 (359)
++..++++.+.++=- --+-..+.....+.+.+.+| .+++.+|+.+ +...-.|+.-+| =+.+++.
T Consensus 162 ~~al~~v~~~~pdV~nHNvETVprL~~~VRp~A~Y~~SL----~~L~~~k~~~P~i~TKSgiMlGLG------Et~~Ev~ 231 (306)
T COG0320 162 DDALEIVADAGPDVFNHNVETVPRLYPRVRPGATYERSL----SLLERAKELGPDIPTKSGLMVGLG------ETDEEVI 231 (306)
T ss_pred HHHHHHHHhcCcchhhcccccchhcccccCCCCcHHHHH----HHHHHHHHhCCCcccccceeeecC------CcHHHHH
Confidence 455556776654311 11122333334556666666 5667778877 444455552232 2568999
Q ss_pred HHHHHHHHCCcCEEEEcCC----------CCCCcHHHHHHHHHHH
Q 018252 281 YVAKELHDMGCFEISLGDT----------IGVGTPGTVVPMLEAV 315 (359)
Q Consensus 281 ~~a~~l~~~Gad~I~L~DT----------~G~~~P~~v~~lv~~l 315 (359)
+..+-+.++|+|.+.|.-= .-+-+|+++.++=+.-
T Consensus 232 e~m~DLr~~gvdilTiGQYlqPS~~HlpV~ryv~PeeF~~~~~~a 276 (306)
T COG0320 232 EVMDDLRSAGVDILTIGQYLQPSRKHLPVQRYVTPEEFDELEEVA 276 (306)
T ss_pred HHHHHHHHcCCCEEEeccccCCccccCCceeccCHHHHHHHHHHH
Confidence 9999999999999987631 2344577777665433
No 122
>COG0191 Fba Fructose/tagatose bisphosphate aldolase [Carbohydrate transport and metabolism]
Probab=96.82 E-value=0.15 Score=49.74 Aligned_cols=201 Identities=16% Similarity=0.152 Sum_probs=133.5
Q ss_pred cccCCCCC--CCCCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcCCCCCHHHHHHHh----hhcCCCeEEEEeC---ChH
Q 018252 135 RDGLQNEK--NTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAV----RDLEGARLPVLTP---NLK 205 (359)
Q Consensus 135 RDG~Q~~~--~~~~~~~k~~ia~~L~~aGv~~IEvG~fvspk~vPq~~D~~ev~~~l----~~~~~~~l~~l~~---n~~ 205 (359)
+++.+..+ +....+.-..+++.-.+.+-+.|=-.+...-++ +.-...+...+ ...+ +.++.... +.+
T Consensus 14 ke~~yAvpAfN~~nlE~~~AileaA~e~~sPvIiq~S~g~~~y---~gg~~~~~~~v~~~a~~~~-vPV~lHlDHg~~~~ 89 (286)
T COG0191 14 KENGYAVPAFNINNLETLQAILEAAEEEKSPVIIQFSEGAAKY---AGGADSLAHMVKALAEKYG-VPVALHLDHGASFE 89 (286)
T ss_pred HHcCCceeeeeecCHHHHHHHHHHHHHhCCCEEEEecccHHHH---hchHHHHHHHHHHHHHHCC-CCEEEECCCCCCHH
Confidence 34445543 445689999999999999999986665322221 12122222332 2333 65555554 458
Q ss_pred hHHHHHHcCCCEEEEecCCchHHHHhhhcCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCC--CCCCHHHHHH--
Q 018252 206 GFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVE--GAIPPSKVAY-- 281 (359)
Q Consensus 206 gie~a~~aGv~~V~i~~s~S~~~~~~n~~~t~~e~l~~i~~~i~~Ak~~G~~V~~~is~~fg~~~~--~r~~~e~l~~-- 281 (359)
++.+++++|...+.+=.|. .+.+|+++..++++++|+..|+.|.+.|-+.=|-+++ .-.+++.+.+
T Consensus 90 ~~~~ai~~GFsSvMiDgS~----------~~~eENi~~tkevv~~ah~~gvsVEaElG~~GG~Edg~~~~~~~~~~tdp~ 159 (286)
T COG0191 90 DCKQAIRAGFSSVMIDGSH----------LPFEENIAITKEVVEFAHAYGVSVEAELGTLGGEEDGVVLYTDPADLTDPE 159 (286)
T ss_pred HHHHHHhcCCceEEecCCc----------CCHHHHHHHHHHHHHHHHHcCCcEEEEeccccCccCCcccccchhhhCCHH
Confidence 8999999999988874432 2368889999999999999999999988876566662 2233332222
Q ss_pred -HHHHHHHCCcCE--EEEcCCCCCCcHH---HHHHHHHHHHHhCCCceEEEEeCCCCCcHHHHHHHHHHcCCCEEec
Q 018252 282 -VAKELHDMGCFE--ISLGDTIGVGTPG---TVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQVSPMHAKP 352 (359)
Q Consensus 282 -~a~~l~~~Gad~--I~L~DT~G~~~P~---~v~~lv~~l~~~~p~~~L~~H~HNd~GLAlANalaAv~AGa~~ID~ 352 (359)
..+....-|+|. +.+.-.=|.-.|. -=-++++.+++..+ +||.+|+=- |........|++.|+.-|+.
T Consensus 160 ea~~fv~~tgiD~LA~aiGn~HG~Yk~~~p~L~~~~L~~i~~~~~-~PlVlHGgS--Gip~~eI~~aI~~GV~KvNi 233 (286)
T COG0191 160 EALEFVERTGIDALAAAIGNVHGVYKPGNPKLDFDRLKEIQEAVS-LPLVLHGGS--GIPDEEIREAIKLGVAKVNI 233 (286)
T ss_pred HHHHHHhccCcceeeeeccccccCCCCCCCCCCHHHHHHHHHHhC-CCEEEeCCC--CCCHHHHHHHHHhCceEEee
Confidence 222233456774 5555666665542 22456677777776 788888765 99999999999999998865
No 123
>PRK05481 lipoyl synthase; Provisional
Probab=96.80 E-value=0.12 Score=50.37 Aligned_cols=143 Identities=19% Similarity=0.264 Sum_probs=98.4
Q ss_pred CCCCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcCC--CCCHHHHHHHhhh-cCCCeEEEEeCC----hHhHHHHHHcCC
Q 018252 143 NTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQ--LADARDVMEAVRD-LEGARLPVLTPN----LKGFEAAIAAGA 215 (359)
Q Consensus 143 ~~~~~~~k~~ia~~L~~aGv~~IEvG~fvspk~vPq--~~D~~ev~~~l~~-~~~~~l~~l~~n----~~gie~a~~aGv 215 (359)
..++.++.++.++.+.+.|++.|-+.+..... .|. .....++++.+++ .+++++..+.+. .+.+....++|.
T Consensus 78 ~s~~~eeI~~ea~~l~~~G~kEI~L~gg~~~d-~~~~~~~~l~~Ll~~I~~~~p~irI~~l~~~~~~~~e~L~~l~~ag~ 156 (289)
T PRK05481 78 LPLDPDEPERVAEAVARMGLKYVVITSVDRDD-LPDGGAQHFAETIRAIRELNPGTTIEVLIPDFRGRMDALLTVLDARP 156 (289)
T ss_pred CCCCHHHHHHHHHHHHHCCCCEEEEEEeeCCC-cccccHHHHHHHHHHHHhhCCCcEEEEEccCCCCCHHHHHHHHhcCc
Confidence 34899999999999999999999887533211 011 1123445555554 577888888874 267888888998
Q ss_pred CEEEEecCCch-HHHHhhhcCCHHHHHHHHHHHHHHHHhC--CCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHHCCcC
Q 018252 216 KEVAIFASASE-AFSKSNINCSIEDSLVRYRAVAHAAKVL--SIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCF 292 (359)
Q Consensus 216 ~~V~i~~s~S~-~~~~~n~~~t~~e~l~~i~~~i~~Ak~~--G~~V~~~is~~fg~~~~~r~~~e~l~~~a~~l~~~Gad 292 (359)
+.+....-.++ ++...+-+.+.+ ...++++.|+++ |+.+...+. +|. +. +.++..+..+.+.+.+.+
T Consensus 157 ~i~~~~~ets~~vlk~m~r~~t~e----~~le~i~~ar~~~pgi~~~t~~I--vGf---GE-T~ed~~~tl~~lrel~~d 226 (289)
T PRK05481 157 DVFNHNLETVPRLYKRVRPGADYE----RSLELLKRAKELHPGIPTKSGLM--VGL---GE-TDEEVLEVMDDLRAAGVD 226 (289)
T ss_pred ceeeccccChHHHHHHhCCCCCHH----HHHHHHHHHHHhCCCCeEeeeeE--EEC---CC-CHHHHHHHHHHHHhcCCC
Confidence 88776554443 333322233444 456788888999 999888777 443 22 668888899999999999
Q ss_pred EEEE
Q 018252 293 EISL 296 (359)
Q Consensus 293 ~I~L 296 (359)
.+.+
T Consensus 227 ~v~i 230 (289)
T PRK05481 227 ILTI 230 (289)
T ss_pred EEEE
Confidence 7766
No 124
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=96.78 E-value=0.36 Score=46.66 Aligned_cols=180 Identities=11% Similarity=0.095 Sum_probs=110.0
Q ss_pred CHHHHHHHHHHHHhCCCCEEEEeccCCCCCcCC-CC-CHHHHHHHhhh---cCCCeEEEEeCChHhHHHHHHcCCCEEEE
Q 018252 146 PTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQ-LA-DARDVMEAVRD---LEGARLPVLTPNLKGFEAAIAAGAKEVAI 220 (359)
Q Consensus 146 ~~~~k~~ia~~L~~aGv~~IEvG~fvspk~vPq-~~-D~~ev~~~l~~---~~~~~l~~l~~n~~gie~a~~aGv~~V~i 220 (359)
+.++-+++|+.|.++|+..+-.|+|- |+.-|. +. -.++-++.+++ -.+..+..=.-+...++.+.+. ++.+.|
T Consensus 39 ~~~~~~~~A~~lk~~g~~~~r~~~~k-pRTs~~s~~G~g~~gl~~l~~~~~~~Gl~~~te~~d~~~~~~l~~~-vd~~kI 116 (266)
T PRK13398 39 SEEQMVKVAEKLKELGVHMLRGGAFK-PRTSPYSFQGLGEEGLKILKEVGDKYNLPVVTEVMDTRDVEEVADY-ADMLQI 116 (266)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeeec-CCCCCCccCCcHHHHHHHHHHHHHHcCCCEEEeeCChhhHHHHHHh-CCEEEE
Confidence 68999999999999999999999863 222221 11 11222333332 3455544433466777777666 676666
Q ss_pred ecCCchHHHHhhhcCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCC-CCHHHHHHHHHHHHHCCcCEEEEcCC
Q 018252 221 FASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGA-IPPSKVAYVAKELHDMGCFEISLGDT 299 (359)
Q Consensus 221 ~~s~S~~~~~~n~~~t~~e~l~~i~~~i~~Ak~~G~~V~~~is~~fg~~~~~r-~~~e~l~~~a~~l~~~Gad~I~L~DT 299 (359)
-... . .| .++++++...|..|. +.. +. .+++++...++.+...|-..+.|+..
T Consensus 117 ga~~--~---~n------------~~LL~~~a~~gkPV~------lk~---G~~~s~~e~~~A~e~i~~~Gn~~i~L~~r 170 (266)
T PRK13398 117 GSRN--M---QN------------FELLKEVGKTKKPIL------LKR---GMSATLEEWLYAAEYIMSEGNENVVLCER 170 (266)
T ss_pred Cccc--c---cC------------HHHHHHHhcCCCcEE------EeC---CCCCCHHHHHHHHHHHHhcCCCeEEEEEC
Confidence 3321 1 11 145556667788873 222 23 38889999999999999988888775
Q ss_pred CC---CCcHHHHHHH--HHHHHHhCCCceEEE-EeCCC--CCcHHHHHHHHHHcCCC--EEecee
Q 018252 300 IG---VGTPGTVVPM--LEAVMAVVPVEKLAV-HLHDT--YGQSLPNILISLQVSPM--HAKPCF 354 (359)
Q Consensus 300 ~G---~~~P~~v~~l--v~~l~~~~p~~~L~~-H~HNd--~GLAlANalaAv~AGa~--~ID~tl 354 (359)
-+ ...|....++ +..+++.++ .++.+ =.|-+ .-+..+-+++|+.+||+ .|+.-+
T Consensus 171 G~~t~~~Y~~~~vdl~~i~~lk~~~~-~pV~~D~sHs~G~~~~v~~~~~aAva~Ga~Gl~iE~H~ 234 (266)
T PRK13398 171 GIRTFETYTRNTLDLAAVAVIKELSH-LPIIVDPSHATGRRELVIPMAKAAIAAGADGLMIEVHP 234 (266)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhccC-CCEEEeCCCcccchhhHHHHHHHHHHcCCCEEEEeccC
Confidence 22 2333333332 344555554 67888 34433 12447789999999999 776543
No 125
>PRK09234 fbiC FO synthase; Reviewed
Probab=96.78 E-value=0.058 Score=59.91 Aligned_cols=198 Identities=12% Similarity=0.074 Sum_probs=126.1
Q ss_pred CCCCCCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcCCCCCHHHHHHHhhh-cCCCeEEEEeC-------------ChHh
Q 018252 141 EKNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRD-LEGARLPVLTP-------------NLKG 206 (359)
Q Consensus 141 ~~~~~~~~~k~~ia~~L~~aGv~~IEvG~fvspk~vPq~~D~~ev~~~l~~-~~~~~l~~l~~-------------n~~g 206 (359)
....++.++.++.++...+.|+..|-+-+..+|+. + .....++++.+++ .|++.+-+++| ..+-
T Consensus 553 ~~y~Ls~eeI~~~a~ea~~~G~tev~i~gG~~p~~-~-~~~y~~lir~IK~~~p~i~i~afsp~Ei~~~a~~~Gl~~~e~ 630 (843)
T PRK09234 553 DAYTLSLDEVADRAWEAWVAGATEVCMQGGIHPEL-P-GTGYADLVRAVKARVPSMHVHAFSPMEIVNGAARLGLSIREW 630 (843)
T ss_pred CcccCCHHHHHHHHHHHHHCCCCEEEEecCCCCCc-C-HHHHHHHHHHHHHhCCCeeEEecChHHHHHHHHHcCCCHHHH
Confidence 35779999999999999999999998865556531 1 1112233444443 47888888765 1234
Q ss_pred HHHHHHcCCCEEEEecCCchHHHH---hhh---cCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHH
Q 018252 207 FEAAIAAGAKEVAIFASASEAFSK---SNI---NCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVA 280 (359)
Q Consensus 207 ie~a~~aGv~~V~i~~s~S~~~~~---~n~---~~t~~e~l~~i~~~i~~Ak~~G~~V~~~is~~fg~~~~~r~~~e~l~ 280 (359)
+++..++|++.+.- ...+++.. ..+ .++. +...++++.|+++|+++...++ ||-. -++++.+
T Consensus 631 l~~LkeAGLds~pg--t~aeil~d~vr~~i~p~k~~~----~~wle~i~~Ah~lGi~~~stmm--~G~~----Et~edrv 698 (843)
T PRK09234 631 LTALREAGLDTIPG--TAAEILDDEVRWVLTKGKLPT----AEWIEVVTTAHEVGLRSSSTMM--YGHV----DTPRHWV 698 (843)
T ss_pred HHHHHHhCcCccCC--CchhhCCHHHHhhcCCCCCCH----HHHHHHHHHHHHcCCCcccceE--EcCC----CCHHHHH
Confidence 57788899998752 12223322 111 1233 2345788899999999877665 6642 3778888
Q ss_pred HHHHHHHHCCcC-----E-EE----EcCC----C----CCCcHHHHHHHHHHHHHhCCC-c-eEEEEeCCCCCcHHHHHH
Q 018252 281 YVAKELHDMGCF-----E-IS----LGDT----I----GVGTPGTVVPMLEAVMAVVPV-E-KLAVHLHDTYGQSLPNIL 340 (359)
Q Consensus 281 ~~a~~l~~~Gad-----~-I~----L~DT----~----G~~~P~~v~~lv~~l~~~~p~-~-~L~~H~HNd~GLAlANal 340 (359)
+.+..+.+.+.+ . |- -.+| . ...+|.+..++++..|=.+|+ + .|..-. .++|. .-+.
T Consensus 699 ~hl~~LreLq~~tgGf~~fIPl~F~~~~tpl~l~~~~~~~~t~~e~Lr~iAvaRl~Lp~~i~~Iqa~w-v~lg~--~~~q 775 (843)
T PRK09234 699 AHLRVLRDIQDRTGGFTEFVPLPFVHQNAPLYLAGAARPGPTHRENRAVHALARIMLHGRIDNIQTSW-VKLGV--EGTR 775 (843)
T ss_pred HHHHHHHhcCcccCCeeeeeeccccCCCCCcccccCCCCCCCHHHHHHHHHHHHHhCCCCcccccchh-hhcCH--HHHH
Confidence 888888877653 1 11 2233 1 236778888888777666653 1 222222 34554 3467
Q ss_pred HHHHcCCCEEeceee
Q 018252 341 ISLQVSPMHAKPCFT 355 (359)
Q Consensus 341 aAv~AGa~~ID~tl~ 355 (359)
.++.+||+=+.+|++
T Consensus 776 ~~L~~GaNDlgGtl~ 790 (843)
T PRK09234 776 AMLRGGANDLGGTLM 790 (843)
T ss_pred HHHhcCCcCcccccc
Confidence 999999999999875
No 126
>COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]
Probab=96.72 E-value=0.026 Score=56.49 Aligned_cols=114 Identities=20% Similarity=0.160 Sum_probs=78.2
Q ss_pred eEEEEeCChHhHHHHHHcCCCEEEEecCCchHHHHhhhcCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCC
Q 018252 196 RLPVLTPNLKGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIP 275 (359)
Q Consensus 196 ~l~~l~~n~~gie~a~~aGv~~V~i~~s~S~~~~~~n~~~t~~e~l~~i~~~i~~Ak~~G~~V~~~is~~fg~~~~~r~~ 275 (359)
.+.+...+.+++..+++.|+|.|.+-.+.--..... .+-+.+ .+.+.+++|+++|.++-+.+.... ....
T Consensus 8 ell~pag~l~~l~~ai~~GADaVY~G~~~~~~R~~a-~nfs~~----~l~e~i~~ah~~gkk~~V~~N~~~-----~~~~ 77 (347)
T COG0826 8 ELLAPAGNLEDLKAAIAAGADAVYIGEKEFGLRRRA-LNFSVE----DLAEAVELAHSAGKKVYVAVNTLL-----HNDE 77 (347)
T ss_pred eeecCCCCHHHHHHHHHcCCCEEEeCCccccccccc-ccCCHH----HHHHHHHHHHHcCCeEEEEecccc-----ccch
Confidence 333444478999999999999888754310111111 234444 478999999999998755554221 2234
Q ss_pred HHHHHHHHHHHHHCCcCEEEEcCCCCCCcHHHHHHHHHHHHHhCCCceEEEEeC
Q 018252 276 PSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLH 329 (359)
Q Consensus 276 ~e~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~lv~~l~~~~p~~~L~~H~H 329 (359)
.+.+.+..+.+.++|+|.|.+.|. -++..+++..|++++++=+.
T Consensus 78 ~~~~~~~l~~l~e~GvDaviv~Dp----------g~i~l~~e~~p~l~ih~S~q 121 (347)
T COG0826 78 LETLERYLDRLVELGVDAVIVADP----------GLIMLARERGPDLPIHVSTQ 121 (347)
T ss_pred hhHHHHHHHHHHHcCCCEEEEcCH----------HHHHHHHHhCCCCcEEEeee
Confidence 456788999999999999999993 46777888899877766443
No 127
>PRK08508 biotin synthase; Provisional
Probab=96.72 E-value=0.25 Score=47.81 Aligned_cols=188 Identities=12% Similarity=0.026 Sum_probs=118.4
Q ss_pred CCHHHHHHHHHHHHhCCCCEEEEe-ccCCCCCcCCCCCHHHHHHHhh---h-cCCCeEEEEe--CChHhHHHHHHcCCCE
Q 018252 145 VPTGVKVELIRRLVSSGLPVVEAT-SFVSPKWVPQLADARDVMEAVR---D-LEGARLPVLT--PNLKGFEAAIAAGAKE 217 (359)
Q Consensus 145 ~~~~~k~~ia~~L~~aGv~~IEvG-~fvspk~vPq~~D~~ev~~~l~---~-~~~~~l~~l~--~n~~gie~a~~aGv~~ 217 (359)
+++++.++.++...+.|+..+-+. +...+. . .+.+.+.+.++ + .+++.+.+.. .+.+.+++..++|++.
T Consensus 40 ~s~eeI~~~a~~a~~~g~~~~~lv~sg~~~~---~-~~~e~~~ei~~~ik~~~p~l~i~~s~G~~~~e~l~~Lk~aGld~ 115 (279)
T PRK08508 40 KDIEQIVQEAKMAKANGALGFCLVTSGRGLD---D-KKLEYVAEAAKAVKKEVPGLHLIACNGTASVEQLKELKKAGIFS 115 (279)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEEeccCCCC---c-ccHHHHHHHHHHHHhhCCCcEEEecCCCCCHHHHHHHHHcCCCE
Confidence 799999999999999999887652 211110 0 13344444444 3 2455543322 2557888888999999
Q ss_pred EEEecCCchHHHHhh-hcCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHHCCcCEEEE
Q 018252 218 VAIFASASEAFSKSN-INCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISL 296 (359)
Q Consensus 218 V~i~~s~S~~~~~~n-~~~t~~e~l~~i~~~i~~Ak~~G~~V~~~is~~fg~~~~~r~~~e~l~~~a~~l~~~Gad~I~L 296 (359)
+.+-+-+++.+-... -+.+.++ ..+.++.|++.|+++...+. +|. -=+++++++.+..+.+.+++.|-+
T Consensus 116 ~~~~lEt~~~~~~~i~~~~~~~~----~l~~i~~a~~~Gi~v~sg~I--~Gl----GEt~ed~~~~l~~lr~L~~~svpl 185 (279)
T PRK08508 116 YNHNLETSKEFFPKICTTHTWEE----RFQTCENAKEAGLGLCSGGI--FGL----GESWEDRISFLKSLASLSPHSTPI 185 (279)
T ss_pred EcccccchHHHhcCCCCCCCHHH----HHHHHHHHHHcCCeecceeE--Eec----CCCHHHHHHHHHHHHcCCCCEEee
Confidence 888665565442222 1234444 44666778999998876665 553 226789999999999999884332
Q ss_pred ------cCCC---CCCcHHHHHHHHHHHHHhCCCceEEEEeC--CCCCcHHHHHHHHHHcCCCE
Q 018252 297 ------GDTI---GVGTPGTVVPMLEAVMAVVPVEKLAVHLH--DTYGQSLPNILISLQVSPMH 349 (359)
Q Consensus 297 ------~DT~---G~~~P~~v~~lv~~l~~~~p~~~L~~H~H--Nd~GLAlANalaAv~AGa~~ 349 (359)
..|- ...+|.++.++++..|-.+|+..|-+=+= ..+|- .-..++.+||+-
T Consensus 186 ~~~~p~~~t~~~~~~~~~~~~lr~iAv~Rl~lp~~~i~~~~gr~~~~~~---~~~~~~~~g~n~ 246 (279)
T PRK08508 186 NFFIPNPALPLKAPTLSADEALEIVRLAKEALPNARLMVAGGREVVFGE---RQYEIFEAGANA 246 (279)
T ss_pred CCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCceeeecCChhhhchh---hHHHHHhcCCcc
Confidence 1221 23678888888888887788765555331 11121 234678888765
No 128
>PLN02858 fructose-bisphosphate aldolase
Probab=96.71 E-value=0.13 Score=60.05 Aligned_cols=200 Identities=12% Similarity=0.058 Sum_probs=138.3
Q ss_pred CcccCCCCC--CCCCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcCCCCCHHHHHHHhh---hcCCCeEEEEeC---ChH
Q 018252 134 PRDGLQNEK--NTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVR---DLEGARLPVLTP---NLK 205 (359)
Q Consensus 134 LRDG~Q~~~--~~~~~~~k~~ia~~L~~aGv~~IEvG~fvspk~vPq~~D~~ev~~~l~---~~~~~~l~~l~~---n~~ 205 (359)
-+.+.+..+ +.+..+....++++-.+.+.+.|=-.+...-++.+ .+ +...+. +...+.+..... +.+
T Consensus 1109 A~~~~yav~afn~~n~e~~~avi~aAe~~~sPvIl~~~~~~~~~~~----~~-~~~~~~~~a~~~~vpV~lHLDHg~~~~ 1183 (1378)
T PLN02858 1109 AEKGGYAVGAFNVYNLEGIEAVVAAAEAEKSPAILQVHPGALKQGG----IP-LVSCCIAAAEQASVPITVHFDHGTSKH 1183 (1378)
T ss_pred HHHCCcEEEEEEeCCHHHHHHHHHHHHHhCCCEEEECCccHHhhcC----HH-HHHHHHHHHHHCCCCEEEECCCCCCHH
Confidence 345556554 56789999999999999999998554432222211 12 222222 223455555554 457
Q ss_pred hHHHHHHcCCCEEEEecCCchHHHHhhhcCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCC--------CCCCHH
Q 018252 206 GFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVE--------GAIPPS 277 (359)
Q Consensus 206 gie~a~~aGv~~V~i~~s~S~~~~~~n~~~t~~e~l~~i~~~i~~Ak~~G~~V~~~is~~fg~~~~--------~r~~~e 277 (359)
.+.+|+++|...|.+=.| ..+.+|+++.-++++++|+..|+.|++.|-..=|.++. ..++|+
T Consensus 1184 ~i~~ai~~Gf~SVM~DgS----------~l~~eeNi~~t~~vv~~Ah~~gv~VEaElG~v~g~e~~~~~~~~~~~~T~p~ 1253 (1378)
T PLN02858 1184 ELLEALELGFDSVMVDGS----------HLSFTENISYTKSISSLAHSKGLMVEAELGRLSGTEDGLTVEEYEAKLTDVD 1253 (1378)
T ss_pred HHHHHHHhCCCEEEEeCC----------CCCHHHHHHHHHHHHHHHHHcCCEEEEEecccCCccCCccccccccCCCCHH
Confidence 899999999999888443 23468889999999999999999999888765444443 146887
Q ss_pred HHHHHHHHHHHCCcCE--EEEcCCCCCCc---HHHHHHHHHHHHHhCC--CceEEEEeCCCCCcHHHHHHHHHHcCCCEE
Q 018252 278 KVAYVAKELHDMGCFE--ISLGDTIGVGT---PGTVVPMLEAVMAVVP--VEKLAVHLHDTYGQSLPNILISLQVSPMHA 350 (359)
Q Consensus 278 ~l~~~a~~l~~~Gad~--I~L~DT~G~~~---P~~v~~lv~~l~~~~p--~~~L~~H~HNd~GLAlANalaAv~AGa~~I 350 (359)
+..+++++ .|+|. |.+.-.=|.-. |.-=.++++.+++.++ ++||.+|+= -|..-.....|++.|+.-|
T Consensus 1254 ~a~~Fv~~---TgvD~LAvaiGt~HG~Y~~~~p~l~~~~l~~i~~~~~~~~vpLVlHGg--SG~~~~~~~~ai~~Gi~Ki 1328 (1378)
T PLN02858 1254 QAKEFIDE---TGIDALAVCIGNVHGKYPASGPNLRLDLLKELRALSSKKGVLLVLHGA--SGLPESLIKECIENGVRKF 1328 (1378)
T ss_pred HHHHHHHh---cCCcEEeeecccccccCCCCCCccCHHHHHHHHHHhcCCCCcEEEeCC--CCCCHHHHHHHHHcCCeEE
Confidence 77776663 58885 44444555532 4455578888998873 578888875 4566788999999999988
Q ss_pred ece
Q 018252 351 KPC 353 (359)
Q Consensus 351 D~t 353 (359)
+..
T Consensus 1329 Ni~ 1331 (1378)
T PLN02858 1329 NVN 1331 (1378)
T ss_pred EeC
Confidence 754
No 129
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=96.66 E-value=0.083 Score=50.35 Aligned_cols=174 Identities=14% Similarity=0.138 Sum_probs=92.8
Q ss_pred HHHHHHHhCCCCEEEEeccCCCCCc-CCC--CCHHHHHHHhhhcCCCeEEEEeC--------Ch-----------HhHHH
Q 018252 152 ELIRRLVSSGLPVVEATSFVSPKWV-PQL--ADARDVMEAVRDLEGARLPVLTP--------NL-----------KGFEA 209 (359)
Q Consensus 152 ~ia~~L~~aGv~~IEvG~fvspk~v-Pq~--~D~~ev~~~l~~~~~~~l~~l~~--------n~-----------~gie~ 209 (359)
+.++.+.++|++.||+.......+. +.. .+.+++.+.+.+..+..+.+..+ +. +-++.
T Consensus 14 ~~l~~a~~~G~d~vEl~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~~~~~~~~i~~ 93 (279)
T cd00019 14 NALKRAKEIGFDTVAMFLGNPRSWLSRPLKKERAEKFKAIAEEGPSICLSVHAPYLINLASPDKEKREKSIERLKDEIER 93 (279)
T ss_pred HHHHHHHHcCCCEEEEEcCCCCccCCCCCCHHHHHHHHHHHHHcCCCcEEEEcCceeccCCCCHHHHHHHHHHHHHHHHH
Confidence 3455667899999999652211111 100 23344555555443555554433 10 12344
Q ss_pred HHHcCCCEEEEecCCchHHHHhhhcCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHHC
Q 018252 210 AIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDM 289 (359)
Q Consensus 210 a~~aGv~~V~i~~s~S~~~~~~n~~~t~~e~l~~i~~~i~~Ak~~G~~V~~~is~~fg~~~~~r~~~e~l~~~a~~l~~~ 289 (359)
|.+.|++.+.+.....+. .......+..++.++++++.|+++|+.+ .|............+++.+.++++.+-.
T Consensus 94 A~~lG~~~v~~~~g~~~~---~~~~~~~~~~~~~l~~l~~~a~~~gi~l--~lEn~~~~~~~~~~t~~~~~~li~~v~~- 167 (279)
T cd00019 94 CEELGIRLLVFHPGSYLG---QSKEEGLKRVIEALNELIDKAETKGVVI--ALETMAGQGNEIGSSFEELKEIIDLIKE- 167 (279)
T ss_pred HHHcCCCEEEECCCCCCC---CCHHHHHHHHHHHHHHHHHhccCCCCEE--EEeCCCCCCCCCCCCHHHHHHHHHhcCC-
Confidence 555799988775443221 0001123566788889999999999865 3332222111113566777777776540
Q ss_pred CcCEE-EEcCCC-----CCC--cHHHHHHHHHHHHHhCC-CceEEEEeCCCC
Q 018252 290 GCFEI-SLGDTI-----GVG--TPGTVVPMLEAVMAVVP-VEKLAVHLHDTY 332 (359)
Q Consensus 290 Gad~I-~L~DT~-----G~~--~P~~v~~lv~~l~~~~p-~~~L~~H~HNd~ 332 (359)
-+.+ .+-|+. |.. +|++..+.++.+.+.++ +-...+|.||..
T Consensus 168 -~~~~g~~lD~~h~~~~g~~~~~~~~~~~~l~~~~~~i~~~~i~~vHikD~~ 218 (279)
T cd00019 168 -KPRVGVCIDTCHIFAAGYDISTVEGFEKVLEEFDKVIGLEYLKAIHLNDSK 218 (279)
T ss_pred -CCCeEEEEEhhhHHhccCCCCCHHHHHHHHHHHHHHhChhheeEEEEEcCC
Confidence 2222 112322 222 35667778877777664 235889999874
No 130
>PRK15452 putative protease; Provisional
Probab=96.62 E-value=0.04 Score=56.95 Aligned_cols=133 Identities=14% Similarity=-0.002 Sum_probs=85.5
Q ss_pred CeEEEEeCChHhHHHHHHcCCCEEEEecCCchHHHHhhhcCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCC
Q 018252 195 ARLPVLTPNLKGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAI 274 (359)
Q Consensus 195 ~~l~~l~~n~~gie~a~~aGv~~V~i~~s~S~~~~~~n~~~t~~e~l~~i~~~i~~Ak~~G~~V~~~is~~fg~~~~~r~ 274 (359)
.++.+.+.+.+.++.|+++|+|.|.+-.+.-..... .-+.+. +.+++++++|+++|.++.+.+-.. ...-
T Consensus 4 peLlapag~~e~l~aAi~~GADaVY~G~~~~~~R~~-~~~f~~----edl~eav~~ah~~g~kvyvt~n~i-----~~e~ 73 (443)
T PRK15452 4 PELLSPAGTLKNMRYAFAYGADAVYAGQPRYSLRVR-NNEFNH----ENLALGINEAHALGKKFYVVVNIA-----PHNA 73 (443)
T ss_pred cEEEEECCCHHHHHHHHHCCCCEEEECCCccchhhh-ccCCCH----HHHHHHHHHHHHcCCEEEEEecCc-----CCHH
Confidence 567888889999999999999999884431111100 112233 457889999999999875443211 1123
Q ss_pred CHHHHHHHHHHHHHCCcCEEEEcCCCCCCcHHHHHHHHHHHHHhCCCceEEEEeCCCCCcHHHHHHH---HHHcCCCEEe
Q 018252 275 PPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILI---SLQVSPMHAK 351 (359)
Q Consensus 275 ~~e~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~lv~~l~~~~p~~~L~~H~HNd~GLAlANala---Av~AGa~~ID 351 (359)
+.+.+.+..+.+.++|+|.|.+.|. .++..+++..|+++|.+ +.++-+-|..+ -.+.|+++|-
T Consensus 74 el~~~~~~l~~l~~~gvDgvIV~d~----------G~l~~~ke~~p~l~ih~----stqlni~N~~a~~f~~~lG~~rvv 139 (443)
T PRK15452 74 KLKTFIRDLEPVIAMKPDALIMSDP----------GLIMMVREHFPEMPIHL----SVQANAVNWATVKFWQQMGLTRVI 139 (443)
T ss_pred HHHHHHHHHHHHHhCCCCEEEEcCH----------HHHHHHHHhCCCCeEEE----EecccCCCHHHHHHHHHCCCcEEE
Confidence 4456777788888999999999982 24466677778655433 34444444433 2456887764
No 131
>PRK13396 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=96.55 E-value=0.26 Score=49.51 Aligned_cols=178 Identities=11% Similarity=0.117 Sum_probs=113.1
Q ss_pred CCHHHHHHHHHHHHhCCCCEEEEecc---CCCCCcCCCCCHHHHHHHh---hhcCCCeEEEEeCChHhHHHHHHcCCCEE
Q 018252 145 VPTGVKVELIRRLVSSGLPVVEATSF---VSPKWVPQLADARDVMEAV---RDLEGARLPVLTPNLKGFEAAIAAGAKEV 218 (359)
Q Consensus 145 ~~~~~k~~ia~~L~~aGv~~IEvG~f---vspk~vPq~~D~~ev~~~l---~~~~~~~l~~l~~n~~gie~a~~aGv~~V 218 (359)
=+.++.+++|+.|.++|++.+--|+| .+|..+-.+. ++=++.+ ++-.+..+..=+-+.++++.+.+. ++.+
T Consensus 112 Es~eq~l~~A~~lk~~g~~~~r~g~~kpRtsp~sf~G~g--~~gl~~L~~~~~e~Gl~~~tev~d~~~v~~~~~~-~d~l 188 (352)
T PRK13396 112 ENEEMIVETAKRVKAAGAKFLRGGAYKPRTSPYAFQGHG--ESALELLAAAREATGLGIITEVMDAADLEKIAEV-ADVI 188 (352)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEeeeecCCCCCcccCCch--HHHHHHHHHHHHHcCCcEEEeeCCHHHHHHHHhh-CCeE
Confidence 35889999999999999999998876 3443332233 2223333 344566665545577888888776 6777
Q ss_pred EEecCCchHHHHhhhcCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCC-CHHHHHHHHHHHHHCCcCEEEEc
Q 018252 219 AIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAI-PPSKVAYVAKELHDMGCFEISLG 297 (359)
Q Consensus 219 ~i~~s~S~~~~~~n~~~t~~e~l~~i~~~i~~Ak~~G~~V~~~is~~fg~~~~~r~-~~e~l~~~a~~l~~~Gad~I~L~ 297 (359)
.+-.. ...| .++++++.+.|..|. |+ .+.. +++++...++.+.+.|...|.||
T Consensus 189 qIga~-----~~~n------------~~LL~~va~t~kPVl--lk-------~G~~~t~ee~~~A~e~i~~~Gn~~viL~ 242 (352)
T PRK13396 189 QVGAR-----NMQN------------FSLLKKVGAQDKPVL--LK-------RGMAATIDEWLMAAEYILAAGNPNVILC 242 (352)
T ss_pred EECcc-----cccC------------HHHHHHHHccCCeEE--Ee-------CCCCCCHHHHHHHHHHHHHcCCCeEEEE
Confidence 77322 1111 145666667788772 22 1334 89999999999999999989998
Q ss_pred CC----CCCCcHHHHH--HHHHHHHHhCCCceEEE---EeCCCCCcHHHHHHHHHHcCCC--EEec
Q 018252 298 DT----IGVGTPGTVV--PMLEAVMAVVPVEKLAV---HLHDTYGQSLPNILISLQVSPM--HAKP 352 (359)
Q Consensus 298 DT----~G~~~P~~v~--~lv~~l~~~~p~~~L~~---H~HNd~GLAlANalaAv~AGa~--~ID~ 352 (359)
.. +-...|.... ..+..+++.+ +.|+-+ |.=-...+-.+-+++|+.+||+ .|+.
T Consensus 243 erG~rtf~s~y~~~~~dl~ai~~lk~~~-~lPVi~DpsH~~G~sd~~~~~a~AAva~GAdGliIE~ 307 (352)
T PRK13396 243 ERGIRTFDRQYTRNTLDLSVIPVLRSLT-HLPIMIDPSHGTGKSEYVPSMAMAAIAAGTDSLMIEV 307 (352)
T ss_pred ecCCccCcCCCCCCCcCHHHHHHHHHhh-CCCEEECCcccCCcHHHHHHHHHHHHhhCCCeEEEEe
Confidence 76 1112232222 2345566654 356633 3223333455889999999999 7765
No 132
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=96.55 E-value=0.26 Score=46.45 Aligned_cols=157 Identities=20% Similarity=0.228 Sum_probs=105.4
Q ss_pred CCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcCCCCCHHHHHHHhh-----hcCCCeE-EEEeCChHhHHHHHHcCCCEE
Q 018252 145 VPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVR-----DLEGARL-PVLTPNLKGFEAAIAAGAKEV 218 (359)
Q Consensus 145 ~~~~~k~~ia~~L~~aGv~~IEvG~fvspk~vPq~~D~~ev~~~l~-----~~~~~~l-~~l~~n~~gie~a~~aGv~~V 218 (359)
.+.++-+++++.|.+.|++.||+++- .| ++.+.++.++ +.|++.+ .+-+-+.++++.++++|.+-+
T Consensus 24 ~~~~~a~~~~~al~~gGi~~iEiT~~-tp-------~a~~~i~~l~~~~~~~~p~~~vGaGTVl~~e~a~~a~~aGA~Fi 95 (222)
T PRK07114 24 ADVEVAKKVIKACYDGGARVFEFTNR-GD-------FAHEVFAELVKYAAKELPGMILGVGSIVDAATAALYIQLGANFI 95 (222)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEeCC-CC-------cHHHHHHHHHHHHHhhCCCeEEeeEeCcCHHHHHHHHHcCCCEE
Confidence 57889999999999999999999972 22 3344444443 2355554 333458899999999997743
Q ss_pred EEecCCchHHHHhhhcCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHHCCcCEEEE--
Q 018252 219 AIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISL-- 296 (359)
Q Consensus 219 ~i~~s~S~~~~~~n~~~t~~e~l~~i~~~i~~Ak~~G~~V~~~is~~fg~~~~~r~~~e~l~~~a~~l~~~Gad~I~L-- 296 (359)
- |+.+. .+++++++++|+.+. -|-.+|.++. .+.++|++.|-|
T Consensus 96 V-----sP~~~---------------~~v~~~~~~~~i~~i-----------PG~~TpsEi~----~A~~~Ga~~vKlFP 140 (222)
T PRK07114 96 V-----TPLFN---------------PDIAKVCNRRKVPYS-----------PGCGSLSEIG----YAEELGCEIVKLFP 140 (222)
T ss_pred E-----CCCCC---------------HHHHHHHHHcCCCEe-----------CCCCCHHHHH----HHHHCCCCEEEECc
Confidence 2 22221 267889999999762 1345776644 466799998776
Q ss_pred cCCCCCCcHHHHHHHHHHHHHhCCCceEEEEeCCCCCcHH--HHHHHHHHcCCCEEe-ceee
Q 018252 297 GDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSL--PNILISLQVSPMHAK-PCFT 355 (359)
Q Consensus 297 ~DT~G~~~P~~v~~lv~~l~~~~p~~~L~~H~HNd~GLAl--ANalaAv~AGa~~ID-~tl~ 355 (359)
+++.| | .++++|+.-+|++++-- +=|... .|.-.=+++|+..|= ++.+
T Consensus 141 A~~~G---~----~~ikal~~p~p~i~~~p----tGGV~~~~~n~~~yl~aGa~avg~Gs~L 191 (222)
T PRK07114 141 GSVYG---P----GFVKAIKGPMPWTKIMP----TGGVEPTEENLKKWFGAGVTCVGMGSKL 191 (222)
T ss_pred ccccC---H----HHHHHHhccCCCCeEEe----CCCCCcchhcHHHHHhCCCEEEEEChhh
Confidence 34443 3 46777777778755543 445655 577777888887776 4444
No 133
>KOG3111 consensus D-ribulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=96.52 E-value=0.12 Score=47.66 Aligned_cols=161 Identities=17% Similarity=0.193 Sum_probs=104.4
Q ss_pred HHHHHHHhCCCCEEEE----eccCCCCCcCCCCCHHHHHHHhhhcCC----CeEEEEeCChHh-HHHHHHcCCCEEEEec
Q 018252 152 ELIRRLVSSGLPVVEA----TSFVSPKWVPQLADARDVMEAVRDLEG----ARLPVLTPNLKG-FEAAIAAGAKEVAIFA 222 (359)
Q Consensus 152 ~ia~~L~~aGv~~IEv----G~fvspk~vPq~~D~~ev~~~l~~~~~----~~l~~l~~n~~g-ie~a~~aGv~~V~i~~ 222 (359)
+=.+.|.++|.+.|-+ |.|+ |.++--.-+.+.+++..+ ..+-.++-|.++ ++....+|++.+.+..
T Consensus 21 ~e~~~~l~~GadwlHlDVMDg~FV-----pNiT~G~pvV~slR~~~~~~~ffD~HmMV~~Peq~V~~~a~agas~~tfH~ 95 (224)
T KOG3111|consen 21 AECKKMLDAGADWLHLDVMDGHFV-----PNITFGPPVVESLRKHTGADPFFDVHMMVENPEQWVDQMAKAGASLFTFHY 95 (224)
T ss_pred HHHHHHHHcCCCeEEEeeeccccc-----CCcccchHHHHHHHhccCCCcceeEEEeecCHHHHHHHHHhcCcceEEEEE
Confidence 3456788999999876 4455 334433446777776422 334455667644 6777889999776643
Q ss_pred CCchHHHHhhhcCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHHCCcCEEEEcCCC--
Q 018252 223 SASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTI-- 300 (359)
Q Consensus 223 s~S~~~~~~n~~~t~~e~l~~i~~~i~~Ak~~G~~V~~~is~~fg~~~~~r~~~e~l~~~a~~l~~~Gad~I~L~DT~-- 300 (359)
-+ .+...++++++|+.|+++...|- | -++.+++..+++ -+|. .|.=|+
T Consensus 96 E~----------------~q~~~~lv~~ir~~Gmk~G~alk-----P---gT~Ve~~~~~~~-----~~D~-vLvMtVeP 145 (224)
T KOG3111|consen 96 EA----------------TQKPAELVEKIREKGMKVGLALK-----P---GTPVEDLEPLAE-----HVDM-VLVMTVEP 145 (224)
T ss_pred ee----------------ccCHHHHHHHHHHcCCeeeEEeC-----C---CCcHHHHHHhhc-----cccE-EEEEEecC
Confidence 22 12245788999999999855442 2 366667666665 2221 111122
Q ss_pred CCCc---HHHHHHHHHHHHHhCCCceEEEEeCCCCCcHHHHHHHHHHcCCCEEe
Q 018252 301 GVGT---PGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQVSPMHAK 351 (359)
Q Consensus 301 G~~~---P~~v~~lv~~l~~~~p~~~L~~H~HNd~GLAlANalaAv~AGa~~ID 351 (359)
|.+- -++.-.-++.+|+.+|...|++ |-|++..|+-.+.+|||+.|=
T Consensus 146 GFGGQkFme~mm~KV~~lR~kyp~l~iev----DGGv~~~ti~~~a~AGAN~iV 195 (224)
T KOG3111|consen 146 GFGGQKFMEDMMPKVEWLREKYPNLDIEV----DGGVGPSTIDKAAEAGANMIV 195 (224)
T ss_pred CCchhhhHHHHHHHHHHHHHhCCCceEEe----cCCcCcchHHHHHHcCCCEEE
Confidence 2222 3445556788898999877776 679999999999999999764
No 134
>TIGR03550 F420_cofG 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofG subunit. This model represents either a subunit or a domain, depending on whether or not the genes are fused, of a bifunctional protein that completes the synthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin, or FO. FO is the chromophore of coenzyme F(420), involved in methanogenesis in methanogenic archaea but found in certain other lineages as well. The chromophore also occurs as a cofactor in DNA photolyases in Cyanobacteria.
Probab=96.52 E-value=0.15 Score=50.29 Aligned_cols=201 Identities=13% Similarity=0.076 Sum_probs=113.0
Q ss_pred CCCCCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcC----------CC----CCHHHHHHHhhhcCCCeEEEEeC---Ch
Q 018252 142 KNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVP----------QL----ADARDVMEAVRDLEGARLPVLTP---NL 204 (359)
Q Consensus 142 ~~~~~~~~k~~ia~~L~~aGv~~IEvG~fvspk~vP----------q~----~D~~ev~~~l~~~~~~~l~~l~~---n~ 204 (359)
...++.++.++.++.+.+.|++.|-+.+..+|...- .+ ....++.+.+++..+. +..+.+ +.
T Consensus 32 ~~~l~~eeI~~~a~~~~~~G~~ei~l~~G~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~e~~~-~~~~~~g~lt~ 110 (322)
T TIGR03550 32 AALLSPEEVLEILRKGAAAGCTEALFTFGEKPEERYPEAREWLAEMGYDSTLEYLRELCELALEETGL-LPHTNPGVMSR 110 (322)
T ss_pred cccCCHHHHHHHHHHHHHCCCCEEEEecCCCccccHHHHHHHHHhcCCccHHHHHHHHHHHHHHhcCC-ccccCCCCCCH
Confidence 457899999999999999999998887665553210 00 0111222222221132 222333 44
Q ss_pred HhHHHHHHcCCCEEEEecCCc-hHHHHhhhcC--CHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHH
Q 018252 205 KGFEAAIAAGAKEVAIFASAS-EAFSKSNINC--SIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAY 281 (359)
Q Consensus 205 ~gie~a~~aGv~~V~i~~s~S-~~~~~~n~~~--t~~e~l~~i~~~i~~Ak~~G~~V~~~is~~fg~~~~~r~~~e~l~~ 281 (359)
+.++...++|++ +++..-++ +.+. ..++. +..+..+...++++.|+++|+++..++. ||. .+ ++++.++
T Consensus 111 e~l~~Lk~aG~~-~~~~~Et~~~~l~-~~~~~~~~p~k~~~~~l~~i~~a~~~Gi~~~s~~i--~G~-gE---t~ed~~~ 182 (322)
T TIGR03550 111 DELARLKPVNAS-MGLMLETTSERLC-KGEAHYGSPGKDPAVRLETIEDAGRLKIPFTTGIL--IGI-GE---TREERAE 182 (322)
T ss_pred HHHHHHHhhCCC-CCcchhhhccccc-cccccCCCCCCCHHHHHHHHHHHHHcCCCccceee--EeC-CC---CHHHHHH
Confidence 678888888865 34432221 2111 00111 1111122346889999999999877775 663 22 5566666
Q ss_pred HHHHHHHCC-----cCEEEE------cCCC----CCCcHHHHHHHHHHHHHhCCC-ceEEEEeCCCCCcHHHHHHHHHHc
Q 018252 282 VAKELHDMG-----CFEISL------GDTI----GVGTPGTVVPMLEAVMAVVPV-EKLAVHLHDTYGQSLPNILISLQV 345 (359)
Q Consensus 282 ~a~~l~~~G-----ad~I~L------~DT~----G~~~P~~v~~lv~~l~~~~p~-~~L~~H~HNd~GLAlANalaAv~A 345 (359)
.+..+.+.+ ++.+.+ +.|- ...++.+..++++..|=.+|. ..|..-. .+| ..-+..|+.+
T Consensus 183 ~l~~lr~Lq~~~~g~~~~i~~~f~P~~gTpl~~~~~~s~~e~lr~iAv~Rl~l~~~~~I~~~~--~l~--~~~~~~~L~~ 258 (322)
T TIGR03550 183 SLLAIRELHERYGHIQEVIVQNFRAKPGTPMENHPEPSLEEMLRTVAVARLILPPDISIQVPP--NLN--REDYRLLLDA 258 (322)
T ss_pred HHHHHHHHHHHcCCCeEEecCccccCCCCCccCCCCCCHHHHHHHHHHHHHHcCCCCeeecCC--ccC--hHHHHHHHhc
Confidence 655555443 443321 2342 245677888888877766743 2222222 333 1136889999
Q ss_pred CCCEEeceee
Q 018252 346 SPMHAKPCFT 355 (359)
Q Consensus 346 Ga~~ID~tl~ 355 (359)
||+-+++|+.
T Consensus 259 Gand~~gt~~ 268 (322)
T TIGR03550 259 GIDDWGGVSP 268 (322)
T ss_pred CCccccCccc
Confidence 9999999854
No 135
>TIGR02666 moaA molybdenum cofactor biosynthesis protein A, bacterial. The model for this family describes molybdenum cofactor biosynthesis protein A, or MoaA, as found in bacteria. It does not include the family of probable functional equivalent proteins from the archaea. MoaA works together with MoaC to synthesize precursor Z from guanine.
Probab=96.51 E-value=0.34 Score=47.65 Aligned_cols=166 Identities=19% Similarity=0.095 Sum_probs=103.0
Q ss_pred CCCCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcCCC-CCHHHHHHHhhhcCCCeEEEEeCCh----HhHHHHHHcCCCE
Q 018252 143 NTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQL-ADARDVMEAVRDLEGARLPVLTPNL----KGFEAAIAAGAKE 217 (359)
Q Consensus 143 ~~~~~~~k~~ia~~L~~aGv~~IEvG~fvspk~vPq~-~D~~ev~~~l~~~~~~~l~~l~~n~----~gie~a~~aGv~~ 217 (359)
..++.++..++++.+.+.|++.|-++.. .| -+ .|..++++.+++.++.+-..++.|- +.++...++|++.
T Consensus 41 ~~ls~eei~~~i~~~~~~gv~~V~ltGG-EP----ll~~~l~~li~~i~~~~gi~~v~itTNG~ll~~~~~~L~~~gl~~ 115 (334)
T TIGR02666 41 ELLTFEEIERLVRAFVGLGVRKVRLTGG-EP----LLRKDLVELVARLAALPGIEDIALTTNGLLLARHAKDLKEAGLKR 115 (334)
T ss_pred CCCCHHHHHHHHHHHHHCCCCEEEEECc-cc----cccCCHHHHHHHHHhcCCCCeEEEEeCchhHHHHHHHHHHcCCCe
Confidence 4589999999999999999999988652 22 12 2556666766666666333444342 3466677889999
Q ss_pred EEEecCCchHHHHhhhcCCHHHHHHHHHHHHHHHHhCCCc-EEEEEeeeecCCCCCCCCHHHHHHHHHHHHHCCcC--EE
Q 018252 218 VAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIP-VRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCF--EI 294 (359)
Q Consensus 218 V~i~~s~S~~~~~~n~~~t~~e~l~~i~~~i~~Ak~~G~~-V~~~is~~fg~~~~~r~~~e~l~~~a~~l~~~Gad--~I 294 (359)
|.+.+...+.-....+.. ....++.+.+.++.++++|+. +..++. ... ..+.+++.++++.+.+.|++ -|
T Consensus 116 v~ISld~~~~~~~~~i~~-~~~~~~~vl~~i~~l~~~G~~~v~in~v--v~~----g~n~~ei~~l~~~~~~~gv~~~~i 188 (334)
T TIGR02666 116 VNVSLDSLDPERFAKITR-RGGRLEQVLAGIDAALAAGLEPVKLNTV--VMR----GVNDDEIVDLAEFAKERGVTLRFI 188 (334)
T ss_pred EEEecccCCHHHhheeCC-CCCCHHHHHHHHHHHHHcCCCcEEEEEE--EeC----CCCHHHHHHHHHHHHhcCCeEEEE
Confidence 998775432211112221 012355666777888899997 765543 211 24667889999999999986 23
Q ss_pred EEcCCCCCCc-----HHHHHHHHHHHHHhCC
Q 018252 295 SLGDTIGVGT-----PGTVVPMLEAVMAVVP 320 (359)
Q Consensus 295 ~L~DT~G~~~-----P~~v~~lv~~l~~~~p 320 (359)
.+....+... .....++++.+.+.++
T Consensus 189 e~mp~~~~~~~~~~~~~~~~ei~~~l~~~~~ 219 (334)
T TIGR02666 189 ELMPLGEGNGWREKKFVSADEILERLEQAFG 219 (334)
T ss_pred eccCCCCCccchhhcccCHHHHHHHHHhhcc
Confidence 4555433311 1234566676766654
No 136
>TIGR01520 FruBisAldo_II_A fructose-bisphosphate aldolase, class II, yeast/E. coli subtype. This model represents one of two deeply split, architecturally distinct clades of the family that includes class II fructose-bisphosphate aldolases, tagatose-bisphosphate aldolases, and related uncharacterized proteins. This family is well-conserved and includes characterized FBA from Saccharomyces cerevisiae, Escherichia coli, and Corynebacterium glutamicum. Proteins outside the scope of this model may also be designated as class II fructose-bisphosphate aldolases, but are well separated in an alignment-based phylogenetic tree.
Probab=96.48 E-value=0.63 Score=46.81 Aligned_cols=207 Identities=16% Similarity=0.086 Sum_probs=129.3
Q ss_pred cccCCCCC--CCCCHHHHHHHHHHHHhCCCCEEEEeccCCCCC---------cCCCCC---HHHHHHHhh---hcCCCeE
Q 018252 135 RDGLQNEK--NTVPTGVKVELIRRLVSSGLPVVEATSFVSPKW---------VPQLAD---ARDVMEAVR---DLEGARL 197 (359)
Q Consensus 135 RDG~Q~~~--~~~~~~~k~~ia~~L~~aGv~~IEvG~fvspk~---------vPq~~D---~~ev~~~l~---~~~~~~l 197 (359)
|.+.+..+ +.+..+....++++-.+.+-+.|=-.+...-+. ||+.+- ...+...++ +...+.+
T Consensus 23 ~~~~yAVgAfNv~n~e~~~Avi~AAEe~~sPvIlq~s~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~v~~~Ae~a~VPV 102 (357)
T TIGR01520 23 KENNFAIPAINCTSSSTINAALEAAADVKSPIIIQFSNGGAAFIAGKGVKDEVPQGASILGAIAGAHHVHSIAEHYGVPV 102 (357)
T ss_pred HHCCceEEEEEeCCHHHHHHHHHHHHHhCCCEEEEcCcchhhhcCCcccccccchhhhhhhHHHHHHHHHHHHHHCCCCE
Confidence 33444443 456788899999999999999875443211111 222111 111222222 2234455
Q ss_pred EEEeC---Ch--HhHHHHHHcC-----------CCEEEEecCCchHHHHhhhcCCHHHHHHHHHHHHHHHHhCCCcEEEE
Q 018252 198 PVLTP---NL--KGFEAAIAAG-----------AKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGY 261 (359)
Q Consensus 198 ~~l~~---n~--~gie~a~~aG-----------v~~V~i~~s~S~~~~~~n~~~t~~e~l~~i~~~i~~Ak~~G~~V~~~ 261 (359)
..... +. +.+++++++| ...|.+=.| ..+.+|+++..++++++|+..|+.|.+.
T Consensus 103 alHLDHg~~~~~~~i~~ai~ag~~~~~~~g~~gftSVMiDgS----------~lpfeENI~~TrevVe~Ah~~GvsVEaE 172 (357)
T TIGR01520 103 VLHTDHCAKKLLPWVDGLLEAGEKYFSAHGKPLFSSHMIDLS----------EEPIEENIEICVKYLKRMAKIKMWLEIE 172 (357)
T ss_pred EEECCCCCCcchHHHHHHHHhhhhhhhhcCCCCCceEEeeCC----------CCCHHHHHHHHHHHHHHHHHcCCEEEEE
Confidence 55444 33 3478888886 666665333 2346888999999999999999999988
Q ss_pred EeeeecCCCC----C------CCCHHHHHHHHHHHH-HCCcCE--EEEcCCCCCCc---HHHHHHHHHHHH----HhC--
Q 018252 262 VSCVVGCPVE----G------AIPPSKVAYVAKELH-DMGCFE--ISLGDTIGVGT---PGTVVPMLEAVM----AVV-- 319 (359)
Q Consensus 262 is~~fg~~~~----~------r~~~e~l~~~a~~l~-~~Gad~--I~L~DT~G~~~---P~~v~~lv~~l~----~~~-- 319 (359)
|-..=|.++. . -++|+...+++++.- ..|+|. |.+.-.=|.-. |.--.++++.++ +..
T Consensus 173 LG~vgG~Ed~~~~~~~~~~~~yTdPeeA~~Fv~~t~~~TgvD~LAvAiGT~HG~Yk~~~p~Ld~d~L~~I~~~~~~~~~v 252 (357)
T TIGR01520 173 IGITGGEEDGVDNSHMDAEALYTQPEDVYYAYEELSKISPNFSIAAAFGNVHGVYKPGNVKLTPDILADGQEYVSEKLGL 252 (357)
T ss_pred ecccCCccCCcccccccccccCCCHHHHHHHHHHhccCCCcceeeeeeccccCCcCCCCCccCHHHHHHHHHHHHHhcCC
Confidence 8765444442 1 379999888888763 348885 55555556542 444445666663 433
Q ss_pred C---CceEEEEeCCCCCcHHHHHHHHHHcCCCEEece
Q 018252 320 P---VEKLAVHLHDTYGQSLPNILISLQVSPMHAKPC 353 (359)
Q Consensus 320 p---~~~L~~H~HNd~GLAlANalaAv~AGa~~ID~t 353 (359)
| .++|.+|+ .-|..--....|++.|+.-|+..
T Consensus 253 P~~~~~pLVLHG--gSGi~~e~i~kai~~GI~KINi~ 287 (357)
T TIGR01520 253 PAAKPLFFVFHG--GSGSTKQEIKEALSYGVVKMNID 287 (357)
T ss_pred CcCCCCcEEEeC--CCCCCHHHHHHHHHCCCeEEEeC
Confidence 2 22377776 55677788999999999988764
No 137
>TIGR03470 HpnH hopanoid biosynthesis associated radical SAM protein HpnH. The sequences represented by this model are members of the radical SAM superfamily of enzymes (pfam04055). These enzymes utilize an iron-sulfur redox cluster and S-adenosylmethionine to carry out diverse radical mediated reactions. The members of this clade are frequently found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. The linkage between SHC and this radical SAM enzyme is strong; one is nearly always observed in the same genome where the other is found. A hopanoid biosynthesis locus was described in Zymomonas mobilis consisting of the genes HpnA-E and SHC (HpnF). Continuing past SHC are found a phosphorylase enzyme (ZMO0873, i.e. HpnG, TIGR03468) and this radical SAM enzyme (ZMO0874) which we name here HpnH. Granted, in Z. mobilis, HpnH is in a convergent orientation with respect to HpnA-G, but one gene beyond HpnH
Probab=96.43 E-value=0.27 Score=48.38 Aligned_cols=157 Identities=15% Similarity=0.119 Sum_probs=97.3
Q ss_pred CCCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcCCCCCHHHHHHHhhhcCCCeEEEEeCCh----HhHHHHHHcCCCEEE
Q 018252 144 TVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPVLTPNL----KGFEAAIAAGAKEVA 219 (359)
Q Consensus 144 ~~~~~~k~~ia~~L~~aGv~~IEvG~fvspk~vPq~~D~~ev~~~l~~~~~~~l~~l~~n~----~gie~a~~aGv~~V~ 219 (359)
.++.++.+ +.+.+.|+..|.+.. ..|=.. .|..++++.++.. +.. ..++.|- +.++...++|...|.
T Consensus 58 ~ls~ee~~---~~i~e~g~~~V~i~G-GEPLL~---pdl~eiv~~~~~~-g~~-v~l~TNG~ll~~~~~~l~~~~~~~i~ 128 (318)
T TIGR03470 58 RLSVEECL---RAVDECGAPVVSIPG-GEPLLH---PEIDEIVRGLVAR-KKF-VYLCTNALLLEKKLDKFEPSPYLTFS 128 (318)
T ss_pred CCCHHHHH---HHHHHcCCCEEEEeC-cccccc---ccHHHHHHHHHHc-CCe-EEEecCceehHHHHHHHHhCCCcEEE
Confidence 46777654 445678999887764 222111 2455666666543 333 3455542 345555667877777
Q ss_pred EecC-CchHHHHhhhcCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHHCCcCEEEEcC
Q 018252 220 IFAS-ASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGD 298 (359)
Q Consensus 220 i~~s-~S~~~~~~n~~~t~~e~l~~i~~~i~~Ak~~G~~V~~~is~~fg~~~~~r~~~e~l~~~a~~l~~~Gad~I~L~D 298 (359)
+.+. ..+.|.... + ....++.+.+.++.+++.|+.|..... +. ...+++++.++++.+.+.|++.|.+.-
T Consensus 129 VSLDG~~e~hd~~~-~--~~g~f~~~l~~I~~l~~~G~~v~v~~t--v~----~~~n~~ei~~~~~~~~~lGv~~i~i~p 199 (318)
T TIGR03470 129 VHLDGLREHHDASV-C--REGVFDRAVEAIREAKARGFRVTTNTT--LF----NDTDPEEVAEFFDYLTDLGVDGMTISP 199 (318)
T ss_pred EEEecCchhhchhh-c--CCCcHHHHHHHHHHHHHCCCcEEEEEE--Ee----CCCCHHHHHHHHHHHHHcCCCEEEEec
Confidence 7653 334444321 1 224567777888888999998755443 21 246889999999999999999887731
Q ss_pred --CCC-------CCcHHHHHHHHHHHHHh
Q 018252 299 --TIG-------VGTPGTVVPMLEAVMAV 318 (359)
Q Consensus 299 --T~G-------~~~P~~v~~lv~~l~~~ 318 (359)
..| ...+.+..++++.+.+.
T Consensus 200 ~~~~~~a~~~~~~l~~~e~~~~~~~~~~~ 228 (318)
T TIGR03470 200 GYAYEKAPDQDHFLGRRQTKKLFREVLSN 228 (318)
T ss_pred CcccccccccccccCHHHHHHHHHHHHhh
Confidence 112 35577788888777653
No 138
>PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism. 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde The family also includes a group of related bacterial proteins of unknown function, see examples Q57843 from SWISSPROT and P76143 from SWISSPROT.; GO: 0016829 lyase activity; PDB: 2A4A_A 1VCV_B 1P1X_A 1KTN_B 1JCL_A 1JCJ_A 1MZH_A 3GKF_D 3GLC_L 3GND_N ....
Probab=96.42 E-value=0.049 Score=51.07 Aligned_cols=189 Identities=19% Similarity=0.159 Sum_probs=112.9
Q ss_pred HHHHHHHHHHhCCCCEEEEeccCCCCCcCCCCCHHHHHHHhhhcCCCeEEEEeC--C-------------hHhHHHHHHc
Q 018252 149 VKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPVLTP--N-------------LKGFEAAIAA 213 (359)
Q Consensus 149 ~k~~ia~~L~~aGv~~IEvG~fvspk~vPq~~D~~ev~~~l~~~~~~~l~~l~~--n-------------~~gie~a~~a 213 (359)
+..++++...+.|++.|-+-.. ++ ....+.+. ..+..+..++. . ...++.|++.
T Consensus 20 ~~~~~~~~a~~~~~~av~v~p~----~~------~~~~~~~~-~~~~~~~~vi~fp~g~~~~~~k~~~~~~~~ve~A~~~ 88 (236)
T PF01791_consen 20 DIKKLCREAIEYGFDAVCVTPG----YV------KPAAELLA-GSGVKVGLVIGFPFGTSTTEPKGYDQIVAEVEEAIRL 88 (236)
T ss_dssp HHHHHHHHHHHHTSSEEEEEGG----GH------HHHHHHST-TSTSEEEEEESTTTSSSTHHHHTCEEEHHHHHHHHHT
T ss_pred hHHHHHHHHHHhCCCEEEECHH----HH------HHHHHHhh-ccccccceEEEeCCCCCccccccccchHHHHHHHHHc
Confidence 7788888888999999876531 11 11112221 11235555442 0 2357789999
Q ss_pred CCCEEEEecCCchHHHHhhhcCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHHCCcCE
Q 018252 214 GAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFE 293 (359)
Q Consensus 214 Gv~~V~i~~s~S~~~~~~n~~~t~~e~l~~i~~~i~~Ak~~G~~V~~~is~~fg~~~~~r~~~e~l~~~a~~l~~~Gad~ 293 (359)
|++.|.+.+........ ..++.++.+..+++.|++.|+++..- ....+.+......++.+...++.+.++|+|.
T Consensus 89 GAd~vd~vi~~~~~~~~-----~~~~~~~~i~~v~~~~~~~gl~vIlE-~~l~~~~~~~~~~~~~I~~a~ria~e~GaD~ 162 (236)
T PF01791_consen 89 GADEVDVVINYGALGSG-----NEDEVIEEIAAVVEECHKYGLKVILE-PYLRGEEVADEKKPDLIARAARIAAELGADF 162 (236)
T ss_dssp T-SEEEEEEEHHHHHTT-----HHHHHHHHHHHHHHHHHTSEEEEEEE-ECECHHHBSSTTHHHHHHHHHHHHHHTT-SE
T ss_pred CCceeeeeccccccccc-----cHHHHHHHHHHHHHHHhcCCcEEEEE-EecCchhhcccccHHHHHHHHHHHHHhCCCE
Confidence 99999987653222111 14678899999999999999987554 2112211122336778999999999999998
Q ss_pred EEEcCC-CCCCcHHHHHHHHHHHHHh-CCC-ceEEEEe---CCCCCcHHHHHHHHHHcCCCEEecee
Q 018252 294 ISLGDT-IGVGTPGTVVPMLEAVMAV-VPV-EKLAVHL---HDTYGQSLPNILISLQVSPMHAKPCF 354 (359)
Q Consensus 294 I~L~DT-~G~~~P~~v~~lv~~l~~~-~p~-~~L~~H~---HNd~GLAlANalaAv~AGa~~ID~tl 354 (359)
|-..=+ ....++.++..+-+.+.+. .|. +.+-+=+ +.++=-.+.-++..+++||+++=++.
T Consensus 163 vKt~tg~~~~~t~~~~~~~~~~~~~~~~p~~~~Vk~sGGi~~~~~~~~l~~a~~~i~aGa~~~G~~~ 229 (236)
T PF01791_consen 163 VKTSTGKPVGATPEDVELMRKAVEAAPVPGKVGVKASGGIDAEDFLRTLEDALEFIEAGADRIGTSS 229 (236)
T ss_dssp EEEE-SSSSCSHHHHHHHHHHHHHTHSSTTTSEEEEESSSSHHHHHHSHHHHHHHHHTTHSEEEEEE
T ss_pred EEecCCccccccHHHHHHHHHHHHhcCCCcceEEEEeCCCChHHHHHHHHHHHHHHHcCChhHHHHH
Confidence 766544 2555566666655555532 232 1122211 12222346677888899998876654
No 139
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=96.40 E-value=0.33 Score=45.05 Aligned_cols=155 Identities=18% Similarity=0.189 Sum_probs=101.9
Q ss_pred CCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcCCCCCHHHHHHHhh-hcCC-CeE-EEEeCChHhHHHHHHcCCCEEEEe
Q 018252 145 VPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVR-DLEG-ARL-PVLTPNLKGFEAAIAAGAKEVAIF 221 (359)
Q Consensus 145 ~~~~~k~~ia~~L~~aGv~~IEvG~fvspk~vPq~~D~~ev~~~l~-~~~~-~~l-~~l~~n~~gie~a~~aGv~~V~i~ 221 (359)
.+.++-+++++.|.+.|++.||+.+ ..+ ++.+.++.+. +.++ +.+ .+-+-+.++++.++++|.+-++..
T Consensus 19 ~~~~~~~~~~~a~~~gGi~~iEvt~-~~~-------~~~~~i~~l~~~~~~~~~iGaGTV~~~~~~~~a~~aGA~fivsp 90 (206)
T PRK09140 19 ITPDEALAHVGALIEAGFRAIEIPL-NSP-------DPFDSIAALVKALGDRALIGAGTVLSPEQVDRLADAGGRLIVTP 90 (206)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEeC-CCc-------cHHHHHHHHHHHcCCCcEEeEEecCCHHHHHHHHHcCCCEEECC
Confidence 4789999999999999999999996 222 3444445554 4443 333 222347789999999999877662
Q ss_pred cCCchHHHHhhhcCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHHCCcCEEEEcCCCC
Q 018252 222 ASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIG 301 (359)
Q Consensus 222 ~s~S~~~~~~n~~~t~~e~l~~i~~~i~~Ak~~G~~V~~~is~~fg~~~~~r~~~e~l~~~a~~l~~~Gad~I~L~DT~G 301 (359)
.. + .+++++++..|+.+. .| -.+++++ .++.++|+|.|.+=-+ +
T Consensus 91 ~~--~------------------~~v~~~~~~~~~~~~------~G-----~~t~~E~----~~A~~~Gad~vk~Fpa-~ 134 (206)
T PRK09140 91 NT--D------------------PEVIRRAVALGMVVM------PG-----VATPTEA----FAALRAGAQALKLFPA-S 134 (206)
T ss_pred CC--C------------------HHHHHHHHHCCCcEE------cc-----cCCHHHH----HHHHHcCCCEEEECCC-C
Confidence 21 1 155677778888752 22 3466553 4456789999886222 2
Q ss_pred CCcHHHHHHHHHHHHHhCC-CceEEEEeCCCCCcHHHHHHHHHHcCCCEEe
Q 018252 302 VGTPGTVVPMLEAVMAVVP-VEKLAVHLHDTYGQSLPNILISLQVSPMHAK 351 (359)
Q Consensus 302 ~~~P~~v~~lv~~l~~~~p-~~~L~~H~HNd~GLAlANalaAv~AGa~~ID 351 (359)
...|.. ++.+++.+| .+++..=+ |....|.-.-+++|++.|=
T Consensus 135 ~~G~~~----l~~l~~~~~~~ipvvaiG----GI~~~n~~~~~~aGa~~va 177 (206)
T PRK09140 135 QLGPAG----IKALRAVLPPDVPVFAVG----GVTPENLAPYLAAGAAGFG 177 (206)
T ss_pred CCCHHH----HHHHHhhcCCCCeEEEEC----CCCHHHHHHHHHCCCeEEE
Confidence 223444 444555554 45554433 7778999999999999876
No 140
>cd00946 FBP_aldolase_IIA Class II Type A, Fructose-1,6-bisphosphate (FBP) aldolases. The enzyme catalyses the zinc-dependent, reversible aldol condensation of dihydroxyacetone phosphate with glyceraldehyde-3-phosphate to form fructose-1,6-bisphosphate. FBP aldolase is homodimeric and used in gluconeogenesis and glycolysis. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=96.37 E-value=0.68 Score=46.45 Aligned_cols=199 Identities=12% Similarity=0.052 Sum_probs=124.3
Q ss_pred CCCCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcCCC--C------------CHHHHHHHhhhcCCCeEEEEeC---C--
Q 018252 143 NTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQL--A------------DARDVMEAVRDLEGARLPVLTP---N-- 203 (359)
Q Consensus 143 ~~~~~~~k~~ia~~L~~aGv~~IEvG~fvspk~vPq~--~------------D~~ev~~~l~~~~~~~l~~l~~---n-- 203 (359)
+....+....++++-.+++-+.|=-.+...-+..+.. . ....+...+.+...+.+..... +
T Consensus 22 N~~n~e~~~avi~AAee~~sPvIiq~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~A~~~~VPValHLDHg~~~~ 101 (345)
T cd00946 22 NCTSSSTINAVLEAARDAKSPIIIQFSNGGAAFYAGKGLKNEKQKASIAGAIAAAHHVRSMAEHYGVPVVLHTDHCAKKL 101 (345)
T ss_pred eeCCHHHHHHHHHHHHHhCCCEEEECCccHHhhcCCccccccchhhhhhhHHHHHHHHHHHHHHCCCCEEEECCCCCCcc
Confidence 4567889999999999999999744332111111110 0 0111112222222444544443 3
Q ss_pred -----------hHhHHHHHHcCCCEEEEecCCchHHHHhhhcCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCC-
Q 018252 204 -----------LKGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVE- 271 (359)
Q Consensus 204 -----------~~gie~a~~aGv~~V~i~~s~S~~~~~~n~~~t~~e~l~~i~~~i~~Ak~~G~~V~~~is~~fg~~~~- 271 (359)
.+.+.++++.|...|.+=.| ..+.+|+++..++++++|+..|+.|.+.|-..=|.++.
T Consensus 102 ~~~~~~~~~a~~~~~~~a~~~GftSVMiDgS----------~lp~eENI~~TkevVe~Ah~~gvsVEaElG~igg~ed~~ 171 (345)
T cd00946 102 LPWFDGLLEADEEYFKQHGEPLFSSHMLDLS----------EEPLEENIEICKKYLERMAKINMWLEMEIGITGGEEDGV 171 (345)
T ss_pred chhhHHHHHHHHHHHHHhccCCCceEEeeCC----------CCCHHHHHHHHHHHHHHHHHcCCEEEEEecccCCcccCc
Confidence 12233445678888866333 13568889999999999999999999888765344332
Q ss_pred ------C---CCCHHHHHHHHHHHHH-CCcCE--EEEcCCCCCC---cHHHHHHHHHHH----HHhCC-----CceEEEE
Q 018252 272 ------G---AIPPSKVAYVAKELHD-MGCFE--ISLGDTIGVG---TPGTVVPMLEAV----MAVVP-----VEKLAVH 327 (359)
Q Consensus 272 ------~---r~~~e~l~~~a~~l~~-~Gad~--I~L~DT~G~~---~P~~v~~lv~~l----~~~~p-----~~~L~~H 327 (359)
. -++|++..+++++.-. .|+|. +.+.-.=|.- .|.-=.++++.+ ++.++ +++|.+|
T Consensus 172 ~~~~~~~~~~yTdPeeA~~Fv~~t~~~tgvD~LAvaiGt~HG~Y~~~~p~L~~~~L~~I~~~i~~~~~~~~~~~ipLVLH 251 (345)
T cd00946 172 DNSGVDNAELYTQPEDVWYVYEALSKISPNFSIAAAFGNVHGVYKPGNVKLQPEILGEHQDYVREKLGLADDKPLYFVFH 251 (345)
T ss_pred ccccccccccCCCHHHHHHHHHHhccCCCceeeeeeccccccCCCCCCCccCHHHHHHHHHHHHHhhccccCCCCCEEEe
Confidence 1 3799999999887643 47774 4444455554 243344555555 55553 3677777
Q ss_pred eCCCCCcHHHHHHHHHHcCCCEEece
Q 018252 328 LHDTYGQSLPNILISLQVSPMHAKPC 353 (359)
Q Consensus 328 ~HNd~GLAlANalaAv~AGa~~ID~t 353 (359)
+= -|..-.....|++.|+.-|+..
T Consensus 252 Gg--SG~~~e~i~kai~~GI~KiNi~ 275 (345)
T cd00946 252 GG--SGSTKEEIREAISYGVVKMNID 275 (345)
T ss_pred CC--CCCCHHHHHHHHHcCCeeEEeC
Confidence 64 5888889999999999988764
No 141
>PRK07535 methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase; Validated
Probab=96.37 E-value=0.39 Score=46.18 Aligned_cols=180 Identities=11% Similarity=0.150 Sum_probs=103.9
Q ss_pred CCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcCCCCCHHHHHHHhhh---cCCCeEEEEeCChHhHHHHHHc--CCCEEE
Q 018252 145 VPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRD---LEGARLPVLTPNLKGFEAAIAA--GAKEVA 219 (359)
Q Consensus 145 ~~~~~k~~ia~~L~~aGv~~IEvG~fvspk~vPq~~D~~ev~~~l~~---~~~~~l~~l~~n~~gie~a~~a--Gv~~V~ 219 (359)
-+.+..++.++.+.+.|.++|++|.-+.+. .+.+.+...++. ..++.++.=+.+.+-++.|++. |.+.|+
T Consensus 22 ~d~~~i~~~A~~~~~~GAdiIDVg~~~~~~-----eE~~r~~~~v~~l~~~~~~plsIDT~~~~v~eaaL~~~~G~~iIN 96 (261)
T PRK07535 22 KDAAFIQKLALKQAEAGADYLDVNAGTAVE-----EEPETMEWLVETVQEVVDVPLCIDSPNPAAIEAGLKVAKGPPLIN 96 (261)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEECCCCCch-----hHHHHHHHHHHHHHHhCCCCEEEeCCCHHHHHHHHHhCCCCCEEE
Confidence 356677888999999999999999754321 223344444443 3355555556677889999987 877654
Q ss_pred EecCCchHHHHhhhcCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCC----HHHHHHHHHHHHHCCcC--E
Q 018252 220 IFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIP----PSKVAYVAKELHDMGCF--E 293 (359)
Q Consensus 220 i~~s~S~~~~~~n~~~t~~e~l~~i~~~i~~Ak~~G~~V~~~is~~fg~~~~~r~~----~e~l~~~a~~l~~~Gad--~ 293 (359)
=..... ++...+++.++++|..+.+-.+..-|. +.+ .+++.+.++.+.++|+. .
T Consensus 97 sIs~~~----------------~~~~~~~~l~~~~g~~vv~m~~~~~g~----P~t~~~~~~~l~~~v~~a~~~GI~~~~ 156 (261)
T PRK07535 97 SVSAEG----------------EKLEVVLPLVKKYNAPVVALTMDDTGI----PKDAEDRLAVAKELVEKADEYGIPPED 156 (261)
T ss_pred eCCCCC----------------ccCHHHHHHHHHhCCCEEEEecCCCCC----CCCHHHHHHHHHHHHHHHHHcCCCHhH
Confidence 321100 112245566778888774322111111 222 35566677778899994 5
Q ss_pred EEEcCCCC-C-CcHH---HHHHHHHHHHHhCCCceEEEEeCC-CCCcH------HHHHHHHHHcCCCE
Q 018252 294 ISLGDTIG-V-GTPG---TVVPMLEAVMAVVPVEKLAVHLHD-TYGQS------LPNILISLQVSPMH 349 (359)
Q Consensus 294 I~L~DT~G-~-~~P~---~v~~lv~~l~~~~p~~~L~~H~HN-d~GLA------lANalaAv~AGa~~ 349 (359)
|.|==-+| . ..+. ++-+.++.+++.+|+.++.+=.+| .+|++ -+-...|+++|.+.
T Consensus 157 IilDPgi~~~~~~~~~~~~~l~~i~~l~~~~pg~p~l~G~Sn~Sfglp~r~~in~~fl~~a~~~Gl~~ 224 (261)
T PRK07535 157 IYIDPLVLPLSAAQDAGPEVLETIRRIKELYPKVHTTCGLSNISFGLPNRKLINRAFLVMAMGAGMDS 224 (261)
T ss_pred EEEeCCCCcccCChHHHHHHHHHHHHHHHhCCCCCEEEEeCCCccCCcchHHHHHHHHHHHHHcCCCE
Confidence 66543344 1 1233 344555666677776666554433 45553 23344677888764
No 142
>TIGR00284 dihydropteroate synthase-related protein. This protein has been found so far only in the Archaea, and in particular in those archaea that lack a bacterial-type dihydropteroate synthase. The central region of this protein shows considerable homology to the amino-terminal half of dihydropteroate synthases, while the carboxyl-terminal region shows homology to the small, uncharacterized protein slr0651 of Synechocystis PCC6803.
Probab=96.37 E-value=0.57 Score=49.21 Aligned_cols=172 Identities=17% Similarity=0.070 Sum_probs=105.0
Q ss_pred HHHHHHHHHHHhCCCCEEEEeccCCCCCcCCCCCHHHHHHHhhh---cCCCeEEEEeCChHhHHHHHHcCCCEEEEecCC
Q 018252 148 GVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRD---LEGARLPVLTPNLKGFEAAIAAGAKEVAIFASA 224 (359)
Q Consensus 148 ~~k~~ia~~L~~aGv~~IEvG~fvspk~vPq~~D~~ev~~~l~~---~~~~~l~~l~~n~~gie~a~~aGv~~V~i~~s~ 224 (359)
+.-++-++.+.+.|.++|++|..... | +.+.+...++. ..++.+++=+.+.+-+++|+++|++.|+ ++
T Consensus 165 ~~i~~~A~~~~~~GADIIDIG~~st~---p---~~~~v~~~V~~l~~~~~~pISIDT~~~~v~eaAL~aGAdiIN---sV 235 (499)
T TIGR00284 165 DGIEGLAARMERDGADMVALGTGSFD---D---DPDVVKEKVKTALDALDSPVIADTPTLDELYEALKAGASGVI---MP 235 (499)
T ss_pred HHHHHHHHHHHHCCCCEEEECCCcCC---C---cHHHHHHHHHHHHhhCCCcEEEeCCCHHHHHHHHHcCCCEEE---EC
Confidence 67788899999999999999974321 2 33444444443 3345555556678899999999988766 22
Q ss_pred chHHHHhhhcCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHHCCcCEEEEcCCCCCCc
Q 018252 225 SEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGVGT 304 (359)
Q Consensus 225 S~~~~~~n~~~t~~e~l~~i~~~i~~Ak~~G~~V~~~is~~fg~~~~~r~~~e~l~~~a~~l~~~Gad~I~L~DT~G~~~ 304 (359)
+.. +...++..+++.|..+. +++ .......+++.+.++.+.++|.+.|. .|-.=-..
T Consensus 236 s~~---------------~~d~~~~l~a~~g~~vV--lm~-----~~~~~~~~~l~~~ie~a~~~Gi~~II-lDPglg~~ 292 (499)
T TIGR00284 236 DVE---------------NAVELASEKKLPEDAFV--VVP-----GNQPTNYEELAKAVKKLRTSGYSKVA-ADPSLSPP 292 (499)
T ss_pred Ccc---------------chhHHHHHHHHcCCeEE--EEc-----CCCCchHHHHHHHHHHHHHCCCCcEE-EeCCCCcc
Confidence 221 11234455666777652 221 11122337888999999999997654 44322223
Q ss_pred HHHHHHHHHHHH---HhCCCceEEEEeC--------CCCCcHHHHHHHHHHcCCCEEec
Q 018252 305 PGTVVPMLEAVM---AVVPVEKLAVHLH--------DTYGQSLPNILISLQVSPMHAKP 352 (359)
Q Consensus 305 P~~v~~lv~~l~---~~~p~~~L~~H~H--------Nd~GLAlANalaAv~AGa~~ID~ 352 (359)
+..+.+-+..++ +.++ .++-+=.- +..|...+-+..|++.||++|=+
T Consensus 293 ~~~l~~sL~~l~~~r~~~~-~Pil~GvSNvtel~daDs~g~naal~~~a~e~Ga~ilrv 350 (499)
T TIGR00284 293 LLGLLESIIRFRRASRLLN-VPLVFGAANVTELVDADSHGVNALLAAIALEAGASILYV 350 (499)
T ss_pred hHHHHHHHHHHHHHHHhcC-CcEEEeeccccCCCccchhHHHHHHHHHHHHcCCCEEEE
Confidence 444555555555 3454 34322111 34455566667899999998754
No 143
>PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed
Probab=96.35 E-value=0.46 Score=47.85 Aligned_cols=176 Identities=20% Similarity=0.193 Sum_probs=112.2
Q ss_pred CHHHHHHHHHHHHhCCCCEEEEeccC---CCCCcCCCCCHHH--HHHHhhhcCCCeEEEEeCChHhHHHHHHcCCCEEEE
Q 018252 146 PTGVKVELIRRLVSSGLPVVEATSFV---SPKWVPQLADARD--VMEAVRDLEGARLPVLTPNLKGFEAAIAAGAKEVAI 220 (359)
Q Consensus 146 ~~~~k~~ia~~L~~aGv~~IEvG~fv---spk~vPq~~D~~e--v~~~l~~~~~~~l~~l~~n~~gie~a~~aGv~~V~i 220 (359)
+.++.+++|+.|.++|+..+=-|+|. +|..+-.+.. +. .+....+-.|+.+..=+-+..+++.+.+. ++.+.+
T Consensus 130 ~~~~~~~~A~~lk~~g~~~~r~~~~kpRtsp~~f~g~~~-e~l~~L~~~~~~~Gl~~~t~v~d~~~~~~l~~~-vd~lkI 207 (360)
T PRK12595 130 SYEQVEAVAKALKAKGLKLLRGGAFKPRTSPYDFQGLGV-EGLKILKQVADEYGLAVISEIVNPADVEVALDY-VDVIQI 207 (360)
T ss_pred CHHHHHHHHHHHHHcCCcEEEccccCCCCCCccccCCCH-HHHHHHHHHHHHcCCCEEEeeCCHHHHHHHHHh-CCeEEE
Confidence 68899999999999999999888763 3322212221 22 22222234566665544577888888887 777766
Q ss_pred ecCCchHHHHhhhcCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCC-CCHHHHHHHHHHHHHCCcCEEEEcC-
Q 018252 221 FASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGA-IPPSKVAYVAKELHDMGCFEISLGD- 298 (359)
Q Consensus 221 ~~s~S~~~~~~n~~~t~~e~l~~i~~~i~~Ak~~G~~V~~~is~~fg~~~~~r-~~~e~l~~~a~~l~~~Gad~I~L~D- 298 (359)
-.. + -.| .++++++.+.|.+|. |+ . +. .+++++...++.+.+.|...|.|+.
T Consensus 208 ~s~--~---~~n------------~~LL~~~a~~gkPVi--lk----~---G~~~t~~e~~~Ave~i~~~Gn~~i~L~er 261 (360)
T PRK12595 208 GAR--N---MQN------------FELLKAAGRVNKPVL--LK----R---GLSATIEEFIYAAEYIMSQGNGQIILCER 261 (360)
T ss_pred Ccc--c---ccC------------HHHHHHHHccCCcEE--Ee----C---CCCCCHHHHHHHHHHHHHCCCCCEEEECC
Confidence 322 1 111 156667777888873 22 1 33 5899999999999999998899998
Q ss_pred ---CCCCCcHHHH-HHHHHHHHHhCCCceEEE-EeCCCCC---cHHHHHHHHHHcCCC--EEe
Q 018252 299 ---TIGVGTPGTV-VPMLEAVMAVVPVEKLAV-HLHDTYG---QSLPNILISLQVSPM--HAK 351 (359)
Q Consensus 299 ---T~G~~~P~~v-~~lv~~l~~~~p~~~L~~-H~HNd~G---LAlANalaAv~AGa~--~ID 351 (359)
|....++..+ -..+..+++.+. .|+++ =.|- .| +..+-+++|+.+||+ .|+
T Consensus 262 g~s~yp~~~~~~ldl~~i~~lk~~~~-~PV~~d~~Hs-~G~r~~~~~~a~aAva~GAdg~~iE 322 (360)
T PRK12595 262 GIRTYEKATRNTLDISAVPILKQETH-LPVMVDVTHS-TGRRDLLLPTAKAALAIGADGVMAE 322 (360)
T ss_pred ccCCCCCCCCCCcCHHHHHHHHHHhC-CCEEEeCCCC-CcchhhHHHHHHHHHHcCCCeEEEE
Confidence 2221112211 123445666654 67888 3443 55 667799999999996 554
No 144
>PRK07226 fructose-bisphosphate aldolase; Provisional
Probab=96.27 E-value=0.12 Score=49.55 Aligned_cols=181 Identities=18% Similarity=0.168 Sum_probs=109.8
Q ss_pred CCCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcCCCCCHHHHHHHhhhcCCCeEE-------EEeC--C----hHhHHHH
Q 018252 144 TVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLP-------VLTP--N----LKGFEAA 210 (359)
Q Consensus 144 ~~~~~~k~~ia~~L~~aGv~~IEvG~fvspk~vPq~~D~~ev~~~l~~~~~~~l~-------~l~~--n----~~gie~a 210 (359)
..+.++..++++...+.|++.|-+-.. +++. ..+.+. .++.+. .+.| . ...++.|
T Consensus 35 ~~~~~d~~~~~~~a~~~~~~av~v~~~----~~~~------~~~~~~--~~~~l~~~i~~~~~~~~~~~~~~~~~~ve~A 102 (267)
T PRK07226 35 IDGLVDIRDTVNKVAEGGADAVLMHKG----LARH------GHRGYG--RDVGLIVHLSASTSLSPDPNDKVLVGTVEEA 102 (267)
T ss_pred CcCcCCHHHHHHHHHhcCCCEEEeCHh----HHhh------hccccC--CCCcEEEEEcCCCCCCCCCCcceeeecHHHH
Confidence 346677888999999999998876531 1111 001110 122111 1112 1 1358899
Q ss_pred HHcCCCEEEEecCCchHHHHhhhcCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHHCC
Q 018252 211 IAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMG 290 (359)
Q Consensus 211 ~~aGv~~V~i~~s~S~~~~~~n~~~t~~e~l~~i~~~i~~Ak~~G~~V~~~is~~fg~~~~~r~~~e~l~~~a~~l~~~G 290 (359)
++.|++.|.+....... ...+.++.+.++.+.+++.|+.+.+.. ...|...++..+++.+...++.+.++|
T Consensus 103 ~~~Gad~v~~~~~~g~~--------~~~~~~~~~~~v~~~~~~~g~pl~vi~-~~~g~~~e~~~~~~~i~~a~~~a~e~G 173 (267)
T PRK07226 103 IKLGADAVSVHVNVGSE--------TEAEMLEDLGEVAEECEEWGMPLLAMM-YPRGPGIKNEYDPEVVAHAARVAAELG 173 (267)
T ss_pred HHcCCCEEEEEEecCCh--------hHHHHHHHHHHHHHHHHHcCCcEEEEE-ecCCCccCCCccHHHHHHHHHHHHHHC
Confidence 99999998876432211 134567888899999999999875522 122222233457788888899999999
Q ss_pred cCEEEEcCCCCCCcHHHHHHHHHHHHHh--CCCceEEEEeCCCCCcHHHHHHHHHHcCCCEEec
Q 018252 291 CFEISLGDTIGVGTPGTVVPMLEAVMAV--VPVEKLAVHLHDTYGQSLPNILISLQVSPMHAKP 352 (359)
Q Consensus 291 ad~I~L~DT~G~~~P~~v~~lv~~l~~~--~p~~~L~~H~HNd~GLAlANalaAv~AGa~~ID~ 352 (359)
+|-|-..=+ | .+ ++++.+.+. .|.+.+|---.+|+-.++++.-.++++||+-+-.
T Consensus 174 AD~vKt~~~-~--~~----~~l~~~~~~~~ipV~a~GGi~~~~~~~~l~~v~~~~~aGA~Gis~ 230 (267)
T PRK07226 174 ADIVKTNYT-G--DP----ESFREVVEGCPVPVVIAGGPKTDTDREFLEMVRDAMEAGAAGVAV 230 (267)
T ss_pred CCEEeeCCC-C--CH----HHHHHHHHhCCCCEEEEeCCCCCCHHHHHHHHHHHHHcCCcEEeh
Confidence 999866511 1 23 344444432 4532333222237777899999999999995543
No 145
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=96.27 E-value=0.36 Score=45.31 Aligned_cols=164 Identities=20% Similarity=0.195 Sum_probs=103.0
Q ss_pred HHHHHHHHHHhCCCCEEEE----eccCCCCCcCCCCCHHHHHHHhhhc-CCC--eEEEEeCCh-HhHHHHHHcCCCEEEE
Q 018252 149 VKVELIRRLVSSGLPVVEA----TSFVSPKWVPQLADARDVMEAVRDL-EGA--RLPVLTPNL-KGFEAAIAAGAKEVAI 220 (359)
Q Consensus 149 ~k~~ia~~L~~aGv~~IEv----G~fvspk~vPq~~D~~ev~~~l~~~-~~~--~l~~l~~n~-~gie~a~~aGv~~V~i 220 (359)
.-.+-++.|.++|++.+-+ |.|+ |.++--..+.+.+++. .+. .+--++.+. +-++..+++|++.|.+
T Consensus 13 ~l~~~i~~l~~~g~~~lH~DvmDG~Fv-----pn~tfg~~~i~~i~~~~~~~~~dvHLMv~~p~~~i~~~~~~gad~i~~ 87 (220)
T PRK08883 13 RLGEDVEKVLAAGADVVHFDVMDNHYV-----PNLTFGAPICKALRDYGITAPIDVHLMVKPVDRIIPDFAKAGASMITF 87 (220)
T ss_pred HHHHHHHHHHHcCCCEEEEecccCccc-----CccccCHHHHHHHHHhCCCCCEEEEeccCCHHHHHHHHHHhCCCEEEE
Confidence 4446677888899999766 6665 3444334556667654 343 333445565 5688888999998887
Q ss_pred ecCCchHHHHhhhcCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHHCCcCEEEE----
Q 018252 221 FASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISL---- 296 (359)
Q Consensus 221 ~~s~S~~~~~~n~~~t~~e~l~~i~~~i~~Ak~~G~~V~~~is~~fg~~~~~r~~~e~l~~~a~~l~~~Gad~I~L---- 296 (359)
..-+. ..+.++++++|++|+++...+. | .++.+.+.++.+. +|.|-+
T Consensus 88 H~Ea~----------------~~~~~~l~~ik~~g~k~Glaln-----P---~Tp~~~i~~~l~~-----~D~vlvMtV~ 138 (220)
T PRK08883 88 HVEAS----------------EHVDRTLQLIKEHGCQAGVVLN-----P---ATPLHHLEYIMDK-----VDLILLMSVN 138 (220)
T ss_pred cccCc----------------ccHHHHHHHHHHcCCcEEEEeC-----C---CCCHHHHHHHHHh-----CCeEEEEEec
Confidence 54321 2245677888999998865443 2 3566776666653 333222
Q ss_pred cCCCCC-CcHHHHHHHHHHHHHhCC----CceEEEEeCCCCCcHHHHHHHHHHcCCCEEe
Q 018252 297 GDTIGV-GTPGTVVPMLEAVMAVVP----VEKLAVHLHDTYGQSLPNILISLQVSPMHAK 351 (359)
Q Consensus 297 ~DT~G~-~~P~~v~~lv~~l~~~~p----~~~L~~H~HNd~GLAlANalaAv~AGa~~ID 351 (359)
+.+.|- ..|.. .+.++.+++..+ +++|.+ |-|....|+-..+++||+.+=
T Consensus 139 PGfgGq~fi~~~-lekI~~l~~~~~~~~~~~~I~v----dGGI~~eni~~l~~aGAd~vV 193 (220)
T PRK08883 139 PGFGGQSFIPHT-LDKLRAVRKMIDESGRDIRLEI----DGGVKVDNIREIAEAGADMFV 193 (220)
T ss_pred CCCCCceecHhH-HHHHHHHHHHHHhcCCCeeEEE----ECCCCHHHHHHHHHcCCCEEE
Confidence 223332 23433 334555555443 356666 889999999999999999873
No 146
>TIGR01210 conserved hypothetical protein TIGR01210. This family of exclusively archaeal proteins has no characterized close homologs. Several rounds of PSI-BLAST with a stringent cutoff of 1e-8 shows apparent similarity of the central region of this family to the central regions of the oxygen-independent coproporphyrinogen III dehydrogenase HemN and to other enzymes.
Probab=96.25 E-value=0.23 Score=48.95 Aligned_cols=145 Identities=17% Similarity=0.220 Sum_probs=87.4
Q ss_pred ccCCCCCcCCCCCHHHHHHHhhhcCC-CeEEEEeC----ChHhHHHHHHcCCC-EEEEec-CCchHHHHhhhcCCHHHHH
Q 018252 169 SFVSPKWVPQLADARDVMEAVRDLEG-ARLPVLTP----NLKGFEAAIAAGAK-EVAIFA-SASEAFSKSNINCSIEDSL 241 (359)
Q Consensus 169 ~fvspk~vPq~~D~~ev~~~l~~~~~-~~l~~l~~----n~~gie~a~~aGv~-~V~i~~-s~S~~~~~~n~~~t~~e~l 241 (359)
+|..|..+|. ....++++.+...+. .++.+-++ +.+.++...++|+. +|.+-+ +.++--.+..+|+.. ..
T Consensus 78 sf~D~~~~~~-~~~~~i~~~l~~~~~~~~i~~esrpd~i~~e~L~~l~~aG~~~~v~iG~ES~~d~~L~~~inKg~--t~ 154 (313)
T TIGR01210 78 SFLDDREVPK-ETRNYIFEKIAQRDNLKEVVVESRPEFIDEEKLEELRKIGVNVEVAVGLETANDRIREKSINKGS--TF 154 (313)
T ss_pred CcCCcCcCCH-HHHHHHHHHHHhcCCcceEEEEeCCCcCCHHHHHHHHHcCCCEEEEEecCcCCHHHHHHhhCCCC--CH
Confidence 4555444431 122344444444332 24444443 23567777788987 687744 555554433455432 23
Q ss_pred HHHHHHHHHHHhCCCcEEEEEeeeecCCCCCC-CCHHHHHHHHHHHHHCCcCEEEEcCCC-------------CCCcH--
Q 018252 242 VRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGA-IPPSKVAYVAKELHDMGCFEISLGDTI-------------GVGTP-- 305 (359)
Q Consensus 242 ~~i~~~i~~Ak~~G~~V~~~is~~fg~~~~~r-~~~e~l~~~a~~l~~~Gad~I~L~DT~-------------G~~~P-- 305 (359)
+.+.++++.++++|+.+.++++ +|.|..+. -+.+.+.+.++.+.+++ +.|.+-=+. |...|
T Consensus 155 ~~~~~ai~~~~~~Gi~v~~~~i--~G~P~~se~ea~ed~~~ti~~~~~l~-~~vs~~~l~v~~gT~l~~~~~~G~~~pp~ 231 (313)
T TIGR01210 155 EDFIRAAELARKYGAGVKAYLL--FKPPFLSEKEAIADMISSIRKCIPVT-DTVSINPTNVQKGTLVEFLWNRGLYRPPW 231 (313)
T ss_pred HHHHHHHHHHHHcCCcEEEEEE--ecCCCCChhhhHHHHHHHHHHHHhcC-CcEEEECCEEeCCCHHHHHHHcCCCCCCC
Confidence 4566888899999999999887 88776543 35566777788888888 777654333 33334
Q ss_pred -HHHHHHHHHHHHhC
Q 018252 306 -GTVVPMLEAVMAVV 319 (359)
Q Consensus 306 -~~v~~lv~~l~~~~ 319 (359)
+.+.++++.+++..
T Consensus 232 lws~~e~l~e~~~~~ 246 (313)
T TIGR01210 232 LWSVAEVLKEAKKIG 246 (313)
T ss_pred HHHHHHHHHHHHhhC
Confidence 37778887777543
No 147
>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase. This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum.
Probab=96.24 E-value=0.6 Score=43.49 Aligned_cols=178 Identities=13% Similarity=0.050 Sum_probs=99.0
Q ss_pred HHHHHHHHHHHhCCCCEEEEeccCCCCCcCCCCCHHHHHHHhhhcCCCeEEEEeCChHhHHHHHHcCCCEEEEe---cCC
Q 018252 148 GVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPVLTPNLKGFEAAIAAGAKEVAIF---ASA 224 (359)
Q Consensus 148 ~~k~~ia~~L~~aGv~~IEvG~fvspk~vPq~~D~~ev~~~l~~~~~~~l~~l~~n~~gie~a~~aGv~~V~i~---~s~ 224 (359)
++..++++.+.++|.+.|++|.-..- ......++++.+++..+..+..+--+...+- -++|.+-+. -+.
T Consensus 11 e~~~~ia~~v~~~gtDaI~VGGS~gv----t~~~~~~~v~~ik~~~~lPvilfp~~~~~i~----~~aD~~~~~sllns~ 82 (205)
T TIGR01769 11 DEIEKIAKNAKDAGTDAIMVGGSLGI----VESNLDQTVKKIKKITNLPVILFPGNVNGLS----RYADAVFFMSLLNSA 82 (205)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCcCCC----CHHHHHHHHHHHHhhcCCCEEEECCCccccC----cCCCEEEEEEeecCC
Confidence 55667899999999999999852210 0012334455555533333333322443333 235655442 222
Q ss_pred chHHHHhhhcCCHHHHHHHHHHHHHHHHhCCCcE--EEEEeeeecCC-----CC---CCCCHHHHHHHHHHHHHCCcCEE
Q 018252 225 SEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPV--RGYVSCVVGCP-----VE---GAIPPSKVAYVAKELHDMGCFEI 294 (359)
Q Consensus 225 S~~~~~~n~~~t~~e~l~~i~~~i~~Ak~~G~~V--~~~is~~fg~~-----~~---~r~~~e~l~~~a~~l~~~Gad~I 294 (359)
++.|. +..-...+...|+.|+++ .+|+...=++- .+ .+.+++....++..+..+|.+.|
T Consensus 83 ~~~~i-----------~g~~~~~~~~~~~~~~e~ip~gYiv~~~~~~v~~v~~a~~ip~~~~e~~~~~a~aa~~~G~~~i 151 (205)
T TIGR01769 83 DTYFI-----------VGAQILGAITILKLNLEVIPMAYLIVGPGGAVGYVGKAREIPYNKPEIAAAYCLAAKYFGMKWV 151 (205)
T ss_pred Ccchh-----------hhHHHHHHHHHHHcCCcccceEEEEECCCCceeeecCcccCCCCCHHHHHHHHHHHHHcCCCEE
Confidence 33332 111122333346777754 46654211110 01 12588999999999999999999
Q ss_pred EEcCCCCCCcHHHHHHHHHHHHHhCCCceEEEEeCCCCCcH-HHHHHHHHHcCCCEE
Q 018252 295 SLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQS-LPNILISLQVSPMHA 350 (359)
Q Consensus 295 ~L~DT~G~~~P~~v~~lv~~l~~~~p~~~L~~H~HNd~GLA-lANalaAv~AGa~~I 350 (359)
+|.|..|...|.. .++++.+++... +++.+=+ |.- ...+..++++|||.|
T Consensus 152 ~Le~~sGa~~~v~-~e~i~~Vk~~~~-~Pv~vGG----GIrs~e~a~~l~~~GAD~V 202 (205)
T TIGR01769 152 YLEAGSGASYPVN-PETISLVKKASG-IPLIVGG----GIRSPEIAYEIVLAGADAI 202 (205)
T ss_pred EEEcCCCCCCCCC-HHHHHHHHHhhC-CCEEEeC----CCCCHHHHHHHHHcCCCEE
Confidence 9999988864433 667777777652 3443311 221 244555667899876
No 148
>PRK06245 cofG FO synthase subunit 1; Reviewed
Probab=96.24 E-value=0.28 Score=48.35 Aligned_cols=202 Identities=15% Similarity=0.123 Sum_probs=108.8
Q ss_pred CCCHHHHHHHHHHHHhCCCCEEEEeccCCCCCc-CC----CCC--HHHHHHHhhh----cCCC-eEEEEeC---ChHhHH
Q 018252 144 TVPTGVKVELIRRLVSSGLPVVEATSFVSPKWV-PQ----LAD--ARDVMEAVRD----LEGA-RLPVLTP---NLKGFE 208 (359)
Q Consensus 144 ~~~~~~k~~ia~~L~~aGv~~IEvG~fvspk~v-Pq----~~D--~~ev~~~l~~----~~~~-~l~~l~~---n~~gie 208 (359)
.+++++.++.++.+.+.|+..|-+.+...|... +. +.+ ..++.+.+++ .... .+..+.+ +.+.++
T Consensus 40 ~ls~eei~~~~~~~~~~G~~ei~l~gG~~p~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~~g~~~~~~~~~lt~e~i~ 119 (336)
T PRK06245 40 LLSPEEVKEILRRGADAGCTEALFTFGEVPDESYERIKEQLAEMGYSSILEYLYDLCELALEEGLLPHTNAGILTREEME 119 (336)
T ss_pred cCCHHHHHHHHHHHHHCCCCEEEEecCCCCccchhhhhhhhhhhhHHHHHHHHHHHHHHHhhcCCCccccCCCCCHHHHH
Confidence 699999999999999999999888764443211 00 000 1223333332 1110 1112222 335566
Q ss_pred HHHHcCCCEEEEec-CCchHHHHhhhcC-CHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHH---HH
Q 018252 209 AAIAAGAKEVAIFA-SASEAFSKSNINC-SIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAY---VA 283 (359)
Q Consensus 209 ~a~~aGv~~V~i~~-s~S~~~~~~n~~~-t~~e~l~~i~~~i~~Ak~~G~~V~~~is~~fg~~~~~r~~~e~l~~---~a 283 (359)
...++|+. +.+.. +.++.+.+. ++. ......+...+.++.|+++|+.+...+. +|. .+ +.+...+ .+
T Consensus 120 ~Lk~ag~~-l~~~~et~~e~l~~~-v~~~~~~~~~~~~l~~i~~a~~~Gi~~~~~~i--~G~-gE---t~ed~~~~l~~l 191 (336)
T PRK06245 120 KLKEVNAS-MGLMLEQTSPRLLNT-VHRGSPGKDPELRLETIENAGKLKIPFTTGIL--IGI-GE---TWEDRAESLEAI 191 (336)
T ss_pred HHHHhCCC-CCCCccccchhhHHh-hccCCCCCCHHHHHHHHHHHHHcCCceeeeee--eEC-CC---CHHHHHHHHHHH
Confidence 66666643 34322 234444321 111 0111223346778888999999876665 553 22 3344444 44
Q ss_pred HHHH-HCC-cCEEEE------cCC----CCCCcHHHHHHHHHHHHHhCCCceEEEEeCCCCCcHHHHHHHHHHcCCCEEe
Q 018252 284 KELH-DMG-CFEISL------GDT----IGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQVSPMHAK 351 (359)
Q Consensus 284 ~~l~-~~G-ad~I~L------~DT----~G~~~P~~v~~lv~~l~~~~p~~~L~~H~HNd~GLAlANalaAv~AGa~~ID 351 (359)
+.+. +.| ++.|.+ ..| ....++.++.++++..+..+|. .+.+-.--.+|. .-+..++.+||+-++
T Consensus 192 ~~l~~~~gg~~~~~~~~f~P~~~T~~~~~~~~s~~e~l~~ia~~Rl~l~~-~i~i~~~~~~~~--~~~~~~L~~Gand~~ 268 (336)
T PRK06245 192 AELHERYGHIQEVIIQNFSPKPGIPMENHPEPSLEEMLRVVALARLILPP-DISIQVPPNLNR--DTGLLLLDAGADDLG 268 (336)
T ss_pred HHHHHhhCCCcEEecCCCcCCCCCCcccCCCcCHHHHHHHHHHHHHHCCC-CceEecCCccch--HHHHHHHhcCCcccc
Confidence 4443 232 444331 122 2245678888989888888864 232221124443 335567999999998
Q ss_pred ceeee
Q 018252 352 PCFTF 356 (359)
Q Consensus 352 ~tl~~ 356 (359)
+|+..
T Consensus 269 g~~~~ 273 (336)
T PRK06245 269 GISPV 273 (336)
T ss_pred CCccC
Confidence 88764
No 149
>PRK06267 hypothetical protein; Provisional
Probab=96.24 E-value=0.44 Score=47.62 Aligned_cols=189 Identities=10% Similarity=-0.003 Sum_probs=105.7
Q ss_pred CCCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcCCCCCHHHHHHHhhhcCCCeEEEEeCChHhHHHHHHcCCCEEEEe--
Q 018252 144 TVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPVLTPNLKGFEAAIAAGAKEVAIF-- 221 (359)
Q Consensus 144 ~~~~~~k~~ia~~L~~aGv~~IEvG~fvspk~vPq~~D~~ev~~~l~~~~~~~l~~l~~n~~gie~a~~aGv~~V~i~-- 221 (359)
..+.++.++-++.+.+.|++.+=+...... ...+.+++.+.++...+..+ .+.....+.+.+...+++.+...
T Consensus 62 ~~s~eeI~eea~~~~~~Gv~~~~lsgG~~~----~~~el~~i~e~I~~~~~~~~-~~s~G~~d~~~~~~~~l~Gv~g~~E 136 (350)
T PRK06267 62 RRRVESILAEAILMKRIGWKLEFISGGYGY----TTEEINDIAEMIAYIQGCKQ-YLNVGIIDFLNINLNEIEGVVGAVE 136 (350)
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEEecCCCC----CHHHHHHHHHHHHHhhCCce-EeecccCCHHHHhhccccCceeeee
Confidence 468999999999999999985433221111 01223444555544444221 22222223333322222222222
Q ss_pred cCCchHHHHhhhcCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHHCCcCEEE------
Q 018252 222 ASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEIS------ 295 (359)
Q Consensus 222 ~s~S~~~~~~n~~~t~~e~l~~i~~~i~~Ak~~G~~V~~~is~~fg~~~~~r~~~e~l~~~a~~l~~~Gad~I~------ 295 (359)
....+.+....-+.+.++ ..+.++.|+++|+++...+. +|. .+ +.+++.+.++.+.+++++.+.
T Consensus 137 T~~~~~~~~i~~~~s~ed----~~~~l~~ak~aGi~v~~g~I--iGl-gE---t~ed~~~~l~~l~~l~~d~v~~~~L~P 206 (350)
T PRK06267 137 TVNPKLHREICPGKPLDK----IKEMLLKAKDLGLKTGITII--LGL-GE---TEDDIEKLLNLIEELDLDRITFYSLNP 206 (350)
T ss_pred cCCHHHHHhhCCCCCHHH----HHHHHHHHHHcCCeeeeeEE--EeC-CC---CHHHHHHHHHHHHHcCCCEEEEEeeeE
Confidence 222333444333455554 44667788999999866655 653 22 467888899999999988653
Q ss_pred EcCC----CCCCcHHHHHHHHHHHHHhCCCceEEEEeCCCCCcHHHHHHHHHHcCCCEE
Q 018252 296 LGDT----IGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQVSPMHA 350 (359)
Q Consensus 296 L~DT----~G~~~P~~v~~lv~~l~~~~p~~~L~~H~HNd~GLAlANalaAv~AGa~~I 350 (359)
.++| .-..+|.++.+++..+|-.+|...|-.=.--+.+..++ .++.+||+.|
T Consensus 207 ~pGTp~~~~~~~s~~e~lr~ia~~Rl~lP~~~I~~~~~~~~l~~~~---~~~~aGaN~i 262 (350)
T PRK06267 207 QKGTIFENKPSVTTLEYMNWVSSVRLNFPKIKIITGTWVDKLTNIG---PLIMSGSNVI 262 (350)
T ss_pred CCCCcCCCCCCCCHHHHHHHHHHHHHHCCCCCcchhhHhHhcchhh---HHhhcCccee
Confidence 2344 23467789999999999888976552211101111121 2566898877
No 150
>TIGR02320 PEP_mutase phosphoenolpyruvate phosphomutase. A closely related enzyme, phosphonopyruvate hydrolase from Variovorax sp. Pal2, is excluded from this model.
Probab=96.23 E-value=0.39 Score=46.89 Aligned_cols=189 Identities=13% Similarity=0.054 Sum_probs=110.6
Q ss_pred HHHHHhC---------CCCEEEEecc--CCCCCcCC--CCCHHHHHHHhhhc-CCCeEEEEeC-----Ch----HhHHHH
Q 018252 154 IRRLVSS---------GLPVVEATSF--VSPKWVPQ--LADARDVMEAVRDL-EGARLPVLTP-----NL----KGFEAA 210 (359)
Q Consensus 154 a~~L~~a---------Gv~~IEvG~f--vspk~vPq--~~D~~ev~~~l~~~-~~~~l~~l~~-----n~----~gie~a 210 (359)
++...++ |++.|=++++ +...-+|- +-+.++++..++.+ +.+.+.+.+. +. +-+++.
T Consensus 22 A~~~e~~~~~~~~~~~Gf~ai~~ss~~~a~s~G~pD~~~~~~~e~~~~~~~I~~a~~~Pv~~D~d~Gg~~~~v~r~V~~l 101 (285)
T TIGR02320 22 ALIAEEARVEVGGESLGFDGIWSSSLTDSTSRGVPDIEEASWTQRLDVVEFMFDVTTKPIILDGDTGGNFEHFRRLVRKL 101 (285)
T ss_pred HHHHHHhhhcccCcCCCcCEEEechHHHHHHCCCCCcCcCCHHHHHHHHHHHHhhcCCCEEEecCCCCCHHHHHHHHHHH
Confidence 4456667 9999888753 11111232 23456666666643 2233333332 22 235666
Q ss_pred HHcCCCEEEEecCCchHHH---Hhh---hcCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHH
Q 018252 211 IAAGAKEVAIFASASEAFS---KSN---INCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAK 284 (359)
Q Consensus 211 ~~aGv~~V~i~~s~S~~~~---~~n---~~~t~~e~l~~i~~~i~~Ak~~G~~V~~~is~~fg~~~~~r~~~e~l~~~a~ 284 (359)
+++|+.-|++-....+-.. ..+ .=.+.++..++++.+++....-.+.+.+..- ++ ......++.++-++
T Consensus 102 ~~aGvaGi~iEDq~~pk~cg~~~~~~~~~l~s~ee~~~kI~Aa~~a~~~~~~~IiARTD-a~----~~~~~~~eAi~Ra~ 176 (285)
T TIGR02320 102 ERRGVSAVCIEDKLGLKKNSLFGNDVAQPQASVEEFCGKIRAGKDAQTTEDFMIIARVE-SL----ILGKGMEDALKRAE 176 (285)
T ss_pred HHcCCeEEEEeccCCCccccccCCCCcccccCHHHHHHHHHHHHHhccCCCeEEEEecc-cc----cccCCHHHHHHHHH
Confidence 7789999999554332211 111 1136778887777665553322222222110 11 01235788889999
Q ss_pred HHHHCCcCEEEEcCCCCCCcHHHHHHHHHHHHHhCCCceEEEEeCCCCCcHHHHHHHHHHcCCCEEec
Q 018252 285 ELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQVSPMHAKP 352 (359)
Q Consensus 285 ~l~~~Gad~I~L~DT~G~~~P~~v~~lv~~l~~~~p~~~L~~H~HNd~GLAlANalaAv~AGa~~ID~ 352 (359)
+..++|||.|.+. .+..+++++.++++.+...+|.+++-+.. ..++.- ..-.--++|+++|-.
T Consensus 177 ay~eAGAD~ifv~--~~~~~~~ei~~~~~~~~~~~p~~pl~~~~-~~~~~~--~~~eL~~lG~~~v~~ 239 (285)
T TIGR02320 177 AYAEAGADGIMIH--SRKKDPDEILEFARRFRNHYPRTPLVIVP-TSYYTT--PTDEFRDAGISVVIY 239 (285)
T ss_pred HHHHcCCCEEEec--CCCCCHHHHHHHHHHhhhhCCCCCEEEec-CCCCCC--CHHHHHHcCCCEEEE
Confidence 9999999999987 34688999999999998878777775433 222221 345566779888743
No 151
>PRK00164 moaA molybdenum cofactor biosynthesis protein A; Reviewed
Probab=96.22 E-value=0.43 Score=46.81 Aligned_cols=138 Identities=23% Similarity=0.233 Sum_probs=89.2
Q ss_pred CCCCCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcCCC-CCHHHHHHHhhhcCCCeEEEEeCC---h-HhHHHHHHcCCC
Q 018252 142 KNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQL-ADARDVMEAVRDLEGARLPVLTPN---L-KGFEAAIAAGAK 216 (359)
Q Consensus 142 ~~~~~~~~k~~ia~~L~~aGv~~IEvG~fvspk~vPq~-~D~~ev~~~l~~~~~~~l~~l~~n---~-~gie~a~~aGv~ 216 (359)
...++.++..++++.+.+.|+..|.+.. -.| .+ .|..++++.+++..+..-..++.| . +.++...++|++
T Consensus 46 ~~~ls~eei~~~i~~~~~~gi~~I~~tG-GEP----ll~~~l~~li~~i~~~~~~~~i~itTNG~ll~~~~~~L~~agl~ 120 (331)
T PRK00164 46 EELLSLEEIERLVRAFVALGVRKVRLTG-GEP----LLRKDLEDIIAALAALPGIRDLALTTNGYLLARRAAALKDAGLD 120 (331)
T ss_pred cccCCHHHHHHHHHHHHHCCCCEEEEEC-CCC----cCccCHHHHHHHHHhcCCCceEEEEcCchhHHHHHHHHHHcCCC
Confidence 3458999999999999999999998865 222 22 355666666665533323344444 2 456667788999
Q ss_pred EEEEecCCchHHHHhhhcCCHHHHHHHHHHHHHHHHhCCC-cEEEEEeeeecCCCCCCCCHHHHHHHHHHHHHCCcC
Q 018252 217 EVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSI-PVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCF 292 (359)
Q Consensus 217 ~V~i~~s~S~~~~~~n~~~t~~e~l~~i~~~i~~Ak~~G~-~V~~~is~~fg~~~~~r~~~e~l~~~a~~l~~~Gad 292 (359)
.|.+.+..-+.-....++. ...++++.+.++.+++.|+ .+..+.. +. + ..+.+++.++++.+.+.|++
T Consensus 121 ~i~ISlds~~~e~~~~i~~--~~~~~~vl~~i~~~~~~g~~~v~i~~v--v~-~---g~n~~ei~~l~~~~~~~gv~ 189 (331)
T PRK00164 121 RVNVSLDSLDPERFKAITG--RDRLDQVLAGIDAALAAGLTPVKVNAV--LM-K---GVNDDEIPDLLEWAKDRGIQ 189 (331)
T ss_pred EEEEEeccCCHHHhccCCC--CCCHHHHHHHHHHHHHCCCCcEEEEEE--EE-C---CCCHHHHHHHHHHHHhCCCe
Confidence 9998774432211222222 1346777788888899998 6655442 21 1 23557888899988899986
No 152
>TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase. The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis.
Probab=96.22 E-value=0.24 Score=47.68 Aligned_cols=180 Identities=14% Similarity=0.108 Sum_probs=111.1
Q ss_pred CCHHHHHHHHHHHHhCCCCEEEEecc---CCCCCcCCCCCHHHHHHHhh---hcCCCeEEEEeCChHhHHHHHHcCCCEE
Q 018252 145 VPTGVKVELIRRLVSSGLPVVEATSF---VSPKWVPQLADARDVMEAVR---DLEGARLPVLTPNLKGFEAAIAAGAKEV 218 (359)
Q Consensus 145 ~~~~~k~~ia~~L~~aGv~~IEvG~f---vspk~vPq~~D~~ev~~~l~---~~~~~~l~~l~~n~~gie~a~~aGv~~V 218 (359)
=+.++-+++++.|.+.|.+..-.+.| .+|...-.+. ++=++.++ +-.|+.+..=+-+...++.+.+. ++.+
T Consensus 36 e~~~~~~~~A~~lk~~~~k~~r~~~~KpRtsp~s~~g~g--~~gl~~l~~~~~~~Gl~~~t~~~d~~~~~~l~~~-~d~l 112 (260)
T TIGR01361 36 ESEEQIMETARFVKEAGAKILRGGAFKPRTSPYSFQGLG--EEGLKLLRRAADEHGLPVVTEVMDPRDVEIVAEY-ADIL 112 (260)
T ss_pred CCHHHHHHHHHHHHHHHHHhccCceecCCCCCccccccH--HHHHHHHHHHHHHhCCCEEEeeCChhhHHHHHhh-CCEE
Confidence 36888899999999999986654443 2221111111 22223333 33466655544467788888776 6766
Q ss_pred EEecCCchHHHHhhhcCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCC-CHHHHHHHHHHHHHCCcCEEEEc
Q 018252 219 AIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAI-PPSKVAYVAKELHDMGCFEISLG 297 (359)
Q Consensus 219 ~i~~s~S~~~~~~n~~~t~~e~l~~i~~~i~~Ak~~G~~V~~~is~~fg~~~~~r~-~~e~l~~~a~~l~~~Gad~I~L~ 297 (359)
.+-.. +. .| .++++++.+.|..|. |+ . +.. +++++...++.+.+.|...|.|+
T Consensus 113 kI~s~--~~---~n------------~~LL~~~a~~gkPVi--lk----~---G~~~t~~e~~~Ave~i~~~Gn~~i~l~ 166 (260)
T TIGR01361 113 QIGAR--NM---QN------------FELLKEVGKQGKPVL--LK----R---GMGNTIEEWLYAAEYILSSGNGNVILC 166 (260)
T ss_pred EECcc--cc---cC------------HHHHHHHhcCCCcEE--Ee----C---CCCCCHHHHHHHHHHHHHcCCCcEEEE
Confidence 66322 11 11 146667777888873 22 2 233 89999999999999999989998
Q ss_pred CC-C-CC-CcHHHHH--HHHHHHHHhCCCceEEE-EeCC--CCCcHHHHHHHHHHcCCC--EEecee
Q 018252 298 DT-I-GV-GTPGTVV--PMLEAVMAVVPVEKLAV-HLHD--TYGQSLPNILISLQVSPM--HAKPCF 354 (359)
Q Consensus 298 DT-~-G~-~~P~~v~--~lv~~l~~~~p~~~L~~-H~HN--d~GLAlANalaAv~AGa~--~ID~tl 354 (359)
.. + .+ ..|.... ..+..+++.++ .++++ =.|- ..-+..+-+++|+.+||+ .|+.-+
T Consensus 167 ~rG~s~y~~~~~~~~dl~~i~~lk~~~~-~pV~~ds~Hs~G~r~~~~~~~~aAva~Ga~gl~iE~H~ 232 (260)
T TIGR01361 167 ERGIRTFEKATRNTLDLSAVPVLKKETH-LPIIVDPSHAAGRRDLVIPLAKAAIAAGADGLMIEVHP 232 (260)
T ss_pred ECCCCCCCCCCcCCcCHHHHHHHHHhhC-CCEEEcCCCCCCccchHHHHHHHHHHcCCCEEEEEeCC
Confidence 85 2 33 3333333 23456676664 68888 4453 223446778899999999 676543
No 153
>TIGR03586 PseI pseudaminic acid synthase.
Probab=96.20 E-value=0.48 Score=47.18 Aligned_cols=179 Identities=10% Similarity=0.105 Sum_probs=112.6
Q ss_pred CCHHHHHHHHHHHHhCCCCEEEEeccC-----CCCCcC-------CCC--CHHHHH----------HHhh---hcCCCeE
Q 018252 145 VPTGVKVELIRRLVSSGLPVVEATSFV-----SPKWVP-------QLA--DARDVM----------EAVR---DLEGARL 197 (359)
Q Consensus 145 ~~~~~k~~ia~~L~~aGv~~IEvG~fv-----spk~vP-------q~~--D~~ev~----------~~l~---~~~~~~l 197 (359)
=+.+.-+++++...++|.+.|=...|. ++...+ ... ...+++ ..+. +-.|+.+
T Consensus 14 G~~~~A~~lI~~A~~aGAdavKFQ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~~e~~~~L~~~~~~~Gi~~ 93 (327)
T TIGR03586 14 GSLERALAMIEAAKAAGADAIKLQTYTPDTITLDSDRPEFIIKGGLWDGRTLYDLYQEAHTPWEWHKELFERAKELGLTI 93 (327)
T ss_pred ChHHHHHHHHHHHHHhCCCEEEeeeccHHHhhccccccccccccCCcCCccHHHHHHHhhCCHHHHHHHHHHHHHhCCcE
Confidence 467888899999999999987665431 111100 000 001111 1111 1234444
Q ss_pred EEEeCChHhHHHHHHcCCCEEEEecCCchHHHHhhhcCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHH
Q 018252 198 PVLTPNLKGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPS 277 (359)
Q Consensus 198 ~~l~~n~~gie~a~~aGv~~V~i~~s~S~~~~~~n~~~t~~e~l~~i~~~i~~Ak~~G~~V~~~is~~fg~~~~~r~~~e 277 (359)
..-.-+.+.++...+.|++.+.+--. +. .| + ++++++.+.|.+|. |+ . |..+.+
T Consensus 94 ~stpfd~~svd~l~~~~v~~~KI~S~--~~---~n--------~----~LL~~va~~gkPvi--ls----t---G~~t~~ 147 (327)
T TIGR03586 94 FSSPFDETAVDFLESLDVPAYKIASF--EI---TD--------L----PLIRYVAKTGKPII--MS----T---GIATLE 147 (327)
T ss_pred EEccCCHHHHHHHHHcCCCEEEECCc--cc---cC--------H----HHHHHHHhcCCcEE--EE----C---CCCCHH
Confidence 33333667777777778887766321 11 11 1 45555556788873 22 1 346899
Q ss_pred HHHHHHHHHHHCCcCEEEE--cCCCCCCcHHHHHHH--HHHHHHhCCCceEEEEeCCCCCcHHHHHHHHHHcCCCEEece
Q 018252 278 KVAYVAKELHDMGCFEISL--GDTIGVGTPGTVVPM--LEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQVSPMHAKPC 353 (359)
Q Consensus 278 ~l~~~a~~l~~~Gad~I~L--~DT~G~~~P~~v~~l--v~~l~~~~p~~~L~~H~HNd~GLAlANalaAv~AGa~~ID~t 353 (359)
++...++.+.+.|...|.| | +.++-+|....+| +..+++.++ .+||+=-|- .|..-+++|+.+||++|+.=
T Consensus 148 Ei~~Av~~i~~~g~~~i~LlhC-~s~YP~~~~~~nL~~i~~lk~~f~-~pVG~SDHt---~G~~~~~aAva~GA~iIEkH 222 (327)
T TIGR03586 148 EIQEAVEACREAGCKDLVLLKC-TSSYPAPLEDANLRTIPDLAERFN-VPVGLSDHT---LGILAPVAAVALGACVIEKH 222 (327)
T ss_pred HHHHHHHHHHHCCCCcEEEEec-CCCCCCCcccCCHHHHHHHHHHhC-CCEEeeCCC---CchHHHHHHHHcCCCEEEeC
Confidence 9999999999999976777 7 6666666665544 677888885 789885453 44688899999999999854
Q ss_pred e
Q 018252 354 F 354 (359)
Q Consensus 354 l 354 (359)
+
T Consensus 223 ~ 223 (327)
T TIGR03586 223 F 223 (327)
T ss_pred C
Confidence 3
No 154
>PRK08091 ribulose-phosphate 3-epimerase; Validated
Probab=96.16 E-value=0.23 Score=46.94 Aligned_cols=174 Identities=13% Similarity=0.019 Sum_probs=103.9
Q ss_pred HHHHHHHHHHHHhCCCCEEEE----eccCCCCCcCCCCCHHHHHHHhhhcCCCeEEEEeCCh-HhHHHHHHcCCCEEEEe
Q 018252 147 TGVKVELIRRLVSSGLPVVEA----TSFVSPKWVPQLADARDVMEAVRDLEGARLPVLTPNL-KGFEAAIAAGAKEVAIF 221 (359)
Q Consensus 147 ~~~k~~ia~~L~~aGv~~IEv----G~fvspk~vPq~~D~~ev~~~l~~~~~~~l~~l~~n~-~gie~a~~aGv~~V~i~ 221 (359)
...-.+-++.|.++|++.+-+ |.|+ |.++-...+.+.++......+--++.|. +-++..+++|++.|.+.
T Consensus 24 ~~~l~~el~~l~~~g~d~lHiDVMDG~FV-----PNitfGp~~i~~i~~~~~~DvHLMv~~P~~~i~~~~~aGad~It~H 98 (228)
T PRK08091 24 WLKFNETLTTLSENQLRLLHFDIADGQFS-----PFFTVGAIAIKQFPTHCFKDVHLMVRDQFEVAKACVAAGADIVTLQ 98 (228)
T ss_pred HHHHHHHHHHHHHCCCCEEEEeccCCCcC-----CccccCHHHHHHhCCCCCEEEEeccCCHHHHHHHHHHhCCCEEEEc
Confidence 345567788899999999866 5665 3443333445555532223444455565 66888899999988875
Q ss_pred cCCchHHHHhhhcCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHHCCcCEEEE----c
Q 018252 222 ASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISL----G 297 (359)
Q Consensus 222 ~s~S~~~~~~n~~~t~~e~l~~i~~~i~~Ak~~G~~V~~~is~~fg~~~~~r~~~e~l~~~a~~l~~~Gad~I~L----~ 297 (359)
.-+. ....+++++.|++|+.+++.|. + +| .++.+.+.++... +|.|-+ +
T Consensus 99 ~Ea~----------------~~~~~~l~~Ik~~g~~~kaGla--l-nP---~Tp~~~i~~~l~~-----vD~VLiMtV~P 151 (228)
T PRK08091 99 VEQT----------------HDLALTIEWLAKQKTTVLIGLC--L-CP---ETPISLLEPYLDQ-----IDLIQILTLDP 151 (228)
T ss_pred ccCc----------------ccHHHHHHHHHHCCCCceEEEE--E-CC---CCCHHHHHHHHhh-----cCEEEEEEECC
Confidence 4321 1234677888999994444443 2 22 3677777766663 443222 2
Q ss_pred CCCCCCcHHHHHHHHHHHHHhCC----CceEEEEeCCCCCcHHHHHHHHHHcCCCEE-eceeee
Q 018252 298 DTIGVGTPGTVVPMLEAVMAVVP----VEKLAVHLHDTYGQSLPNILISLQVSPMHA-KPCFTF 356 (359)
Q Consensus 298 DT~G~~~P~~v~~lv~~l~~~~p----~~~L~~H~HNd~GLAlANalaAv~AGa~~I-D~tl~~ 356 (359)
.-.|-.--..+.+-++.+++..+ ...|++ |=|....|+-...+||||++ -+|-.|
T Consensus 152 GfgGQ~f~~~~l~KI~~lr~~~~~~~~~~~IeV----DGGI~~~ti~~l~~aGaD~~V~GSalF 211 (228)
T PRK08091 152 RTGTKAPSDLILDRVIQVENRLGNRRVEKLISI----DGSMTLELASYLKQHQIDWVVSGSALF 211 (228)
T ss_pred CCCCccccHHHHHHHHHHHHHHHhcCCCceEEE----ECCCCHHHHHHHHHCCCCEEEEChhhh
Confidence 22333333345555555555432 234555 66788889999999999965 334333
No 155
>PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional
Probab=96.15 E-value=1.2 Score=41.87 Aligned_cols=171 Identities=18% Similarity=0.145 Sum_probs=102.6
Q ss_pred CCHHHHHHHHHHHHhCCCCEEEE----eccCCCCCcCCCCCHHHHHHHhhhc-CCCeEEEE--eCCh-HhHHHHHHcCCC
Q 018252 145 VPTGVKVELIRRLVSSGLPVVEA----TSFVSPKWVPQLADARDVMEAVRDL-EGARLPVL--TPNL-KGFEAAIAAGAK 216 (359)
Q Consensus 145 ~~~~~k~~ia~~L~~aGv~~IEv----G~fvspk~vPq~~D~~ev~~~l~~~-~~~~l~~l--~~n~-~gie~a~~aGv~ 216 (359)
.+...-.+-++.|.++|++.+-+ |.|+ |.++.-....+.+++. ++..+-+. +.+. .-++...++|++
T Consensus 16 ~d~~~l~~~~~~l~~~~~~~~H~DimDg~fv-----pn~~~G~~~v~~lr~~~~~~~lDvHLm~~~p~~~i~~~~~~Gad 90 (228)
T PTZ00170 16 ADFSKLADEAQDVLSGGADWLHVDVMDGHFV-----PNLSFGPPVVKSLRKHLPNTFLDCHLMVSNPEKWVDDFAKAGAS 90 (228)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEEecccCccC-----CCcCcCHHHHHHHHhcCCCCCEEEEECCCCHHHHHHHHHHcCCC
Confidence 34456667788899999998766 5555 4443333445555543 35444332 2344 567888899999
Q ss_pred EEEEecCCchHHHHhhhcCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHHCCcCEEEE
Q 018252 217 EVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISL 296 (359)
Q Consensus 217 ~V~i~~s~S~~~~~~n~~~t~~e~l~~i~~~i~~Ak~~G~~V~~~is~~fg~~~~~r~~~e~l~~~a~~l~~~Gad~I~L 296 (359)
.|.+...+.+ .++..+++.+|++|+.+...+. | .++.+.+.++.+ ...+|.|.+
T Consensus 91 ~itvH~ea~~---------------~~~~~~l~~ik~~G~~~gval~-----p---~t~~e~l~~~l~---~~~vD~Vl~ 144 (228)
T PTZ00170 91 QFTFHIEATE---------------DDPKAVARKIREAGMKVGVAIK-----P---KTPVEVLFPLID---TDLVDMVLV 144 (228)
T ss_pred EEEEeccCCc---------------hHHHHHHHHHHHCCCeEEEEEC-----C---CCCHHHHHHHHc---cchhhhHHh
Confidence 9888554321 1245678888999988755443 1 346666655531 001221100
Q ss_pred ----cCCCCCCcHHHHHHHHHHHHHhCCCceEEEEeCCCCCcHHHHHHHHHHcCCCEE
Q 018252 297 ----GDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQVSPMHA 350 (359)
Q Consensus 297 ----~DT~G~~~P~~v~~lv~~l~~~~p~~~L~~H~HNd~GLAlANalaAv~AGa~~I 350 (359)
+...|...-....+-++.+++..+...|.+ |-|.-..|.-.+.++||+++
T Consensus 145 m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~I~V----dGGI~~~ti~~~~~aGad~i 198 (228)
T PTZ00170 145 MTVEPGFGGQSFMHDMMPKVRELRKRYPHLNIQV----DGGINLETIDIAADAGANVI 198 (228)
T ss_pred hhcccCCCCcEecHHHHHHHHHHHHhcccCeEEE----CCCCCHHHHHHHHHcCCCEE
Confidence 122243333344555677777766545554 66888889999999999986
No 156
>PRK08005 epimerase; Validated
Probab=96.14 E-value=0.48 Score=44.29 Aligned_cols=166 Identities=13% Similarity=0.090 Sum_probs=106.0
Q ss_pred HHHHHHHHHHHHhCCCCEEEE----eccCCCCCcCCCCCHHHHHHHhhhcCC--CeEEEEeCCh-HhHHHHHHcCCCEEE
Q 018252 147 TGVKVELIRRLVSSGLPVVEA----TSFVSPKWVPQLADARDVMEAVRDLEG--ARLPVLTPNL-KGFEAAIAAGAKEVA 219 (359)
Q Consensus 147 ~~~k~~ia~~L~~aGv~~IEv----G~fvspk~vPq~~D~~ev~~~l~~~~~--~~l~~l~~n~-~gie~a~~aGv~~V~ 219 (359)
...-.+-++.|.++|++.|-+ |.|+ |.++--..+++.+++..+ ..+--++.+. +-++..+++|++.|.
T Consensus 12 ~~~l~~el~~l~~~g~d~lHiDvMDG~FV-----PN~tfG~~~i~~l~~~t~~~~DvHLMv~~P~~~i~~~~~~gad~It 86 (210)
T PRK08005 12 PLRYAEALTALHDAPLGSLHLDIEDTSFI-----NNITFGMKTIQAVAQQTRHPLSFHLMVSSPQRWLPWLAAIRPGWIF 86 (210)
T ss_pred HHHHHHHHHHHHHCCCCEEEEeccCCCcC-----CccccCHHHHHHHHhcCCCCeEEEeccCCHHHHHHHHHHhCCCEEE
Confidence 345556778899999998766 5665 344333445666665433 3334445555 568888899999888
Q ss_pred EecCCchHHHHhhhcCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHHCCcCEEEE---
Q 018252 220 IFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISL--- 296 (359)
Q Consensus 220 i~~s~S~~~~~~n~~~t~~e~l~~i~~~i~~Ak~~G~~V~~~is~~fg~~~~~r~~~e~l~~~a~~l~~~Gad~I~L--- 296 (359)
+..-+. ....++++++|++|+++...|. | .++.+.+.++... +|.|-+
T Consensus 87 ~H~Ea~----------------~~~~~~l~~Ik~~G~k~GlAln-----P---~Tp~~~i~~~l~~-----vD~VlvMsV 137 (210)
T PRK08005 87 IHAESV----------------QNPSEILADIRAIGAKAGLALN-----P---ATPLLPYRYLALQ-----LDALMIMTS 137 (210)
T ss_pred EcccCc----------------cCHHHHHHHHHHcCCcEEEEEC-----C---CCCHHHHHHHHHh-----cCEEEEEEe
Confidence 754322 1234677888999999866553 2 3677777666652 332211
Q ss_pred -cCCCCCCcHHHHHHHHHHHHHhCCCceEEEEeCCCCCcHHHHHHHHHHcCCCEE
Q 018252 297 -GDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQVSPMHA 350 (359)
Q Consensus 297 -~DT~G~~~P~~v~~lv~~l~~~~p~~~L~~H~HNd~GLAlANalaAv~AGa~~I 350 (359)
+.-.|-.--..+.+-++.+++..+...|++ |=|....|+-...++||+.+
T Consensus 138 ~PGf~GQ~f~~~~~~KI~~l~~~~~~~~I~V----DGGI~~~~i~~l~~aGad~~ 188 (210)
T PRK08005 138 EPDGRGQQFIAAMCEKVSQSREHFPAAECWA----DGGITLRAARLLAAAGAQHL 188 (210)
T ss_pred cCCCccceecHHHHHHHHHHHHhcccCCEEE----ECCCCHHHHHHHHHCCCCEE
Confidence 333344444455566666776665434554 67888999999999999976
No 157
>TIGR01949 AroFGH_arch predicted phospho-2-dehydro-3-deoxyheptonate aldolase. Together these two genes appear to perform the synthesis of 3-dehydroquinate. It is presumed that the substrates and the chemical transformations involved are identical, but this has not yet been proven experimentally.
Probab=96.14 E-value=0.13 Score=49.06 Aligned_cols=191 Identities=14% Similarity=0.076 Sum_probs=113.5
Q ss_pred EEEeCCCcccCCCCCCCCCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcCCCCCHHHHHHHhhhcCCCeEEEEe----C-
Q 018252 128 KIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPVLT----P- 202 (359)
Q Consensus 128 ~I~D~TLRDG~Q~~~~~~~~~~k~~ia~~L~~aGv~~IEvG~fvspk~vPq~~D~~ev~~~l~~~~~~~l~~l~----~- 202 (359)
.=+|-|+=.| ...+.++..++++...+.|++.|-+-.. +++... +.. ..++.+..-+ |
T Consensus 21 ~aiDh~~l~g-----p~~~~~~~~~~~~~a~~~~~~~v~~~p~----~~~~~~------~~~--~~~~~~~~~~~~~~~~ 83 (258)
T TIGR01949 21 VPMDHGVSNG-----PIKGLVDIRKTVNEVAEGGADAVLLHKG----IVRRGH------RGY--GKDVGLIIHLSASTSL 83 (258)
T ss_pred EECCCccccC-----CCCCcCCHHHHHHHHHhcCCCEEEeCcc----hhhhcc------ccc--CCCCcEEEEEcCCCCC
Confidence 3355554444 2346678888999999999999876531 111100 000 1122222211 1
Q ss_pred -----C--h-HhHHHHHHcCCCEEEEecCCchHHHHhhhcCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCC
Q 018252 203 -----N--L-KGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAI 274 (359)
Q Consensus 203 -----n--~-~gie~a~~aGv~~V~i~~s~S~~~~~~n~~~t~~e~l~~i~~~i~~Ak~~G~~V~~~is~~fg~~~~~r~ 274 (359)
. . ..++.+++.|++.|.+...... .+..+.++.+..+.+.+++.|+.+.+.+. ..|-. .+..
T Consensus 84 g~~~~~~~~~~~v~~al~~Ga~~v~~~~~~g~--------~~~~~~~~~~~~i~~~~~~~g~~liv~~~-~~Gvh-~~~~ 153 (258)
T TIGR01949 84 SPDPNDKRIVTTVEDAIRMGADAVSIHVNVGS--------DTEWEQIRDLGMIAEICDDWGVPLLAMMY-PRGPH-IDDR 153 (258)
T ss_pred CCCCCcceeeeeHHHHHHCCCCEEEEEEecCC--------chHHHHHHHHHHHHHHHHHcCCCEEEEEe-ccCcc-cccc
Confidence 1 1 2488999999999888654211 12345678889999999999998765222 22211 1224
Q ss_pred CHHHHHHHHHHHHHCCcCEEEEcCCCCCCcHHHHHHHHHHHHHhCCCceEEE-EeCC--CCCcHHHHHHHHHHcCCCEEe
Q 018252 275 PPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAV-HLHD--TYGQSLPNILISLQVSPMHAK 351 (359)
Q Consensus 275 ~~e~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~lv~~l~~~~p~~~L~~-H~HN--d~GLAlANalaAv~AGa~~ID 351 (359)
+++.+.+.++.+.++|+|-|... . ...++.+++ +.+..+ +|+-. =+-+ ++..++.|.-.++++||+.|-
T Consensus 154 ~~~~~~~~~~~a~~~GADyikt~-~--~~~~~~l~~----~~~~~~-iPVva~GGi~~~~~~~~~~~i~~~~~aGa~Gia 225 (258)
T TIGR01949 154 DPELVAHAARLGAELGADIVKTP-Y--TGDIDSFRD----VVKGCP-APVVVAGGPKTNSDREFLQMIKDAMEAGAAGVA 225 (258)
T ss_pred cHHHHHHHHHHHHHHCCCEEecc-C--CCCHHHHHH----HHHhCC-CcEEEecCCCCCCHHHHHHHHHHHHHcCCcEEe
Confidence 56777777888899999999975 1 123344443 333222 23322 2233 677889999999999999665
Q ss_pred ce
Q 018252 352 PC 353 (359)
Q Consensus 352 ~t 353 (359)
..
T Consensus 226 ~g 227 (258)
T TIGR01949 226 VG 227 (258)
T ss_pred hh
Confidence 43
No 158
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=96.14 E-value=0.74 Score=42.56 Aligned_cols=185 Identities=12% Similarity=0.061 Sum_probs=105.9
Q ss_pred hhhcCCCCccEEEeCCCcccCCCCCCCC-CHHHHHHHHHHHHhCCCCEEEEeccCCCCCcCCCCCHHHHHHHhhhcCCCe
Q 018252 118 KFLKGIPRFVKIVEVGPRDGLQNEKNTV-PTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGAR 196 (359)
Q Consensus 118 ~~~~~~p~~V~I~D~TLRDG~Q~~~~~~-~~~~k~~ia~~L~~aGv~~IEvG~fvspk~vPq~~D~~ev~~~l~~~~~~~ 196 (359)
|++..+|+-+.+.=-|+ - +.++ +..+-.++++.+.+.|+..++++.+ .+ ++.++...+..
T Consensus 2 ~~~~~~~~~~~~~~~~~-~-----~~~~~~~~~i~~~a~~~~~~G~~~~~~~~~---------~~----~~~i~~~~~iP 62 (219)
T cd04729 2 KLLEQLKGGLIVSCQAL-P-----GEPLHSPEIMAAMALAAVQGGAVGIRANGV---------ED----IRAIRARVDLP 62 (219)
T ss_pred cHHHHhcCCeEEEccCC-C-----CCCcCcHHHHHHHHHHHHHCCCeEEEcCCH---------HH----HHHHHHhCCCC
Confidence 45666777765544433 2 3333 3567799999999999999986542 12 23333222333
Q ss_pred EEE------------EeCChHhHHHHHHcCCCEEEEecCCchHHHHhhhcCCHHHHHHHHHHHHHHHHhCC-CcEEEEEe
Q 018252 197 LPV------------LTPNLKGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLS-IPVRGYVS 263 (359)
Q Consensus 197 l~~------------l~~n~~gie~a~~aGv~~V~i~~s~S~~~~~~n~~~t~~e~l~~i~~~i~~Ak~~G-~~V~~~is 263 (359)
+.+ +.+....++.++++|++-|-+-.+.... ..+ +.+.++++.++++| +.+..
T Consensus 63 il~~~~~~~~~~~~~ig~~~~~~~~a~~aGad~I~~~~~~~~~----p~~-------~~~~~~i~~~~~~g~~~iiv--- 128 (219)
T cd04729 63 IIGLIKRDYPDSEVYITPTIEEVDALAAAGADIIALDATDRPR----PDG-------ETLAELIKRIHEEYNCLLMA--- 128 (219)
T ss_pred EEEEEecCCCCCCceeCCCHHHHHHHHHcCCCEEEEeCCCCCC----CCC-------cCHHHHHHHHHHHhCCeEEE---
Confidence 321 1123457899999999965553321110 000 13446777788888 54421
Q ss_pred eeecCCCCCCCCHHHHHHHHHHHHHCCcCEEEE--cCCCCCC--cHHHHHHHHHHHHHhCCCceEEEEeCCCCCcH-HHH
Q 018252 264 CVVGCPVEGAIPPSKVAYVAKELHDMGCFEISL--GDTIGVG--TPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQS-LPN 338 (359)
Q Consensus 264 ~~fg~~~~~r~~~e~l~~~a~~l~~~Gad~I~L--~DT~G~~--~P~~v~~lv~~l~~~~p~~~L~~H~HNd~GLA-lAN 338 (359)
+ ..++++ ++.+.++|++.|.+ .+..+.. ......++++.+++.+. +++-. .-|.. ..+
T Consensus 129 ---~-----v~t~~e----a~~a~~~G~d~i~~~~~g~t~~~~~~~~~~~~~l~~i~~~~~-ipvia----~GGI~~~~~ 191 (219)
T cd04729 129 ---D-----ISTLEE----ALNAAKLGFDIIGTTLSGYTEETAKTEDPDFELLKELRKALG-IPVIA----EGRINSPEQ 191 (219)
T ss_pred ---E-----CCCHHH----HHHHHHcCCCEEEccCccccccccCCCCCCHHHHHHHHHhcC-CCEEE----eCCCCCHHH
Confidence 1 235544 36677889998753 2222211 11122367777887663 45554 45663 578
Q ss_pred HHHHHHcCCCEEec
Q 018252 339 ILISLQVSPMHAKP 352 (359)
Q Consensus 339 alaAv~AGa~~ID~ 352 (359)
+..++++||+.|=.
T Consensus 192 ~~~~l~~GadgV~v 205 (219)
T cd04729 192 AAKALELGADAVVV 205 (219)
T ss_pred HHHHHHCCCCEEEE
Confidence 89999999987643
No 159
>COG0502 BioB Biotin synthase and related enzymes [Coenzyme metabolism]
Probab=96.13 E-value=0.66 Score=46.32 Aligned_cols=197 Identities=12% Similarity=0.043 Sum_probs=129.9
Q ss_pred CCCCCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcCCCCCHHHHHHHhhhcC---CCeEEEEe--CChHhHHHHHHcCCC
Q 018252 142 KNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLE---GARLPVLT--PNLKGFEAAIAAGAK 216 (359)
Q Consensus 142 ~~~~~~~~k~~ia~~L~~aGv~~IEvG~fvspk~vPq~~D~~ev~~~l~~~~---~~~l~~l~--~n~~gie~a~~aGv~ 216 (359)
...++.++.++-|+...+.|.....++.....+ + .+.+++.+.++.+. +.++.+-. -+.+.++...++|++
T Consensus 81 ~~l~~~eeIle~Ak~ak~~Ga~r~c~~aagr~~--~--~~~~~i~~~v~~Vk~~~~le~c~slG~l~~eq~~~L~~aGvd 156 (335)
T COG0502 81 RKLMEVEEILEAAKKAKAAGATRFCMGAAGRGP--G--RDMEEVVEAIKAVKEELGLEVCASLGMLTEEQAEKLADAGVD 156 (335)
T ss_pred hhcCCHHHHHHHHHHHHHcCCceEEEEEeccCC--C--ccHHHHHHHHHHHHHhcCcHHhhccCCCCHHHHHHHHHcChh
Confidence 356889999999999999997776666532211 1 46677777776543 34432211 256789999999999
Q ss_pred EEEEecCCch-HHHHhhhcCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHHCC-cCEE
Q 018252 217 EVAIFASASE-AFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMG-CFEI 294 (359)
Q Consensus 217 ~V~i~~s~S~-~~~~~n~~~t~~e~l~~i~~~i~~Ak~~G~~V~~~is~~fg~~~~~r~~~e~l~~~a~~l~~~G-ad~I 294 (359)
.+.--+-+|+ .|.+.....|.++-+ +.++.+|++|+++..... +|-. =+.++-++.+..+.+.. +++|
T Consensus 157 ~ynhNLeTs~~~y~~I~tt~t~edR~----~tl~~vk~~Gi~vcsGgI--~GlG----Es~eDri~~l~~L~~l~~pdsV 226 (335)
T COG0502 157 RYNHNLETSPEFYENIITTRTYEDRL----NTLENVREAGIEVCSGGI--VGLG----ETVEDRAELLLELANLPTPDSV 226 (335)
T ss_pred heecccccCHHHHcccCCCCCHHHHH----HHHHHHHHcCCccccceE--ecCC----CCHHHHHHHHHHHHhCCCCCee
Confidence 8877555554 444555567777655 567788999999854443 4431 25677778888888888 7765
Q ss_pred EE------cCC----CCCCcHHHHHHHHHHHHHhCCCceEEEEeCCCCCcHHHHHHHHHHcCCCEEece
Q 018252 295 SL------GDT----IGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQVSPMHAKPC 353 (359)
Q Consensus 295 ~L------~DT----~G~~~P~~v~~lv~~l~~~~p~~~L~~H~HNd~GLAlANalaAv~AGa~~ID~t 353 (359)
-+ .+| .=-..|.++.+.|+..|=.+|...|-+- =-.-.+.--....++.|||+-|=++
T Consensus 227 PIn~l~P~~GTPle~~~~~~~~e~lk~IA~~Ri~~P~~~Ir~s-~gr~~~~~~~q~~~~~aGansi~~g 294 (335)
T COG0502 227 PINFLNPIPGTPLENAKPLDPFEFLKTIAVARIIMPKSMIRLS-AGRETMLPELQALAFMAGANSIFVG 294 (335)
T ss_pred eeeeecCCCCCccccCCCCCHHHHHHHHHHHHHHCCcceeEcc-CCcccccHHHHHHHHHhccceeeec
Confidence 43 222 3356788899999988888997544432 1222333334667888888876444
No 160
>cd00453 FTBP_aldolase_II Fructose/tagarose-bisphosphate aldolase class II. This family includes fructose-1,6-bisphosphate (FBP) and tagarose 1,6-bisphosphate (TBP) aldolases. FBP-aldolase is homodimeric and used in gluconeogenesis and glycolysis; the enzyme controls the condensation of dihydroxyacetone phosphate with glyceraldehyde-3-phosphate to yield fructose-1,6-bisphosphate. TBP-aldolase is tetrameric and produces tagarose-1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. Although structurally similar, the class I aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=96.10 E-value=0.94 Score=45.26 Aligned_cols=199 Identities=19% Similarity=0.138 Sum_probs=124.5
Q ss_pred CCCCHHHHHHHHHHHHhCCCCEEEEecc-CCCCC--------cCCCCC----HHHHHHHhh---hcCCCeEEEEeC----
Q 018252 143 NTVPTGVKVELIRRLVSSGLPVVEATSF-VSPKW--------VPQLAD----ARDVMEAVR---DLEGARLPVLTP---- 202 (359)
Q Consensus 143 ~~~~~~~k~~ia~~L~~aGv~~IEvG~f-vspk~--------vPq~~D----~~ev~~~l~---~~~~~~l~~l~~---- 202 (359)
+....+....+++.-.+.+.+.|=-.+. ..-+. ||| .| .+.+...++ +.-++.+.....
T Consensus 19 N~~n~e~~~Avi~aAee~~sPvIlq~s~~~~~~~~g~~~~~~~~~-~~~~~~~~~~~~~~~~~A~~~~VPV~lHLDH~~~ 97 (340)
T cd00453 19 NCVGTDSINAVLETAAKVKAPVIVQFSNGGASFIAGKGVKSDVPQ-GAAILGAISGAHHVHQMAEHYGVPVILHTDHCAK 97 (340)
T ss_pred EeCCHHHHHHHHHHHHHhCCCEEEEcCcchHHHhCCCcccccccc-hhhhhhHHHHHHHHHHHHHHCCCCEEEEcCCCCC
Confidence 4467888889999999999999854432 11011 122 11 222222222 223455555543
Q ss_pred -ChHhHHHHHHcC-----------CCEEEEecCCchHHHHhhhcCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCC
Q 018252 203 -NLKGFEAAIAAG-----------AKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPV 270 (359)
Q Consensus 203 -n~~gie~a~~aG-----------v~~V~i~~s~S~~~~~~n~~~t~~e~l~~i~~~i~~Ak~~G~~V~~~is~~fg~~~ 270 (359)
+...+++++++| ...|.+=.| ..+.+|+++..++++++|+..|+.|.+.|-..=|.++
T Consensus 98 ~~~e~i~~ai~~G~~~~~~~~~~~FsSVMiDgS----------~l~~eeNi~~T~~vve~Ah~~gi~VEaElG~igG~ed 167 (340)
T cd00453 98 KLLPWIDGLLDAGEKHFAATGKPLFSSHMIDLS----------EESLQENIEICSKYLERMSKIGMTLEIELGCTGGEED 167 (340)
T ss_pred CCHHHHHHHHHcCCccccccCCCCceeEEecCC----------CCCHHHHHHHHHHHHHHHHHcCCEEEEEEEecCCccC
Confidence 346788999999 666655332 1346788999999999999999999988886544443
Q ss_pred C----------CCCCHHHHHHHHHHHHHCC-cCE--EEEcCCCCCC---cHHHHHHHHHHHHHhC--------CCceEEE
Q 018252 271 E----------GAIPPSKVAYVAKELHDMG-CFE--ISLGDTIGVG---TPGTVVPMLEAVMAVV--------PVEKLAV 326 (359)
Q Consensus 271 ~----------~r~~~e~l~~~a~~l~~~G-ad~--I~L~DT~G~~---~P~~v~~lv~~l~~~~--------p~~~L~~ 326 (359)
. .-++|++..+++++.-+.- +|. +.+.-.=|.- .|.-=.++++.+++.+ ++++|.+
T Consensus 168 ~~~~~~~~~~~~yT~Peea~~Fv~~Tg~i~pvD~LAvsiGt~HG~Yk~g~p~L~~~~L~~i~~~~~~~~gl~~~~~pLVl 247 (340)
T cd00453 168 GVDNSHMDASALYTQPEDVDYAYTELSKISPRFTIAASFGNVHGVYKKGNVVLTPTILRDSQEYVSKKHNLPHNSLNFVF 247 (340)
T ss_pred CcccccccccccCCCHHHHHHHHHHhCCCCcceEEeeecCccccCCCCCCCccCHHHHHHHHHHHHhhcccCCCCCceEE
Confidence 3 0357888887776443211 553 3343344443 2433445566666655 2577887
Q ss_pred EeCCCCCcHHHHHHHHHHcCCCEEecee
Q 018252 327 HLHDTYGQSLPNILISLQVSPMHAKPCF 354 (359)
Q Consensus 327 H~HNd~GLAlANalaAv~AGa~~ID~tl 354 (359)
|+ .-|..--....|+..|+.-|+...
T Consensus 248 HG--gSG~~~e~~~~ai~~Gi~KiNi~T 273 (340)
T cd00453 248 HG--GSGSTAQEIKDSVSYGVVKMNIDT 273 (340)
T ss_pred eC--CCCCCHHHHHHHHHcCCeEEEccc
Confidence 76 456667788899999999887653
No 161
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=96.08 E-value=1.2 Score=41.10 Aligned_cols=168 Identities=15% Similarity=0.098 Sum_probs=105.5
Q ss_pred CCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcCCCCCHHHHHHHhhhcCCCeEE--EEeCChHhHHHHHHcCCCEEEEec
Q 018252 145 VPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLP--VLTPNLKGFEAAIAAGAKEVAIFA 222 (359)
Q Consensus 145 ~~~~~k~~ia~~L~~aGv~~IEvG~fvspk~vPq~~D~~ev~~~l~~~~~~~l~--~l~~n~~gie~a~~aGv~~V~i~~ 222 (359)
.+..+-.++++...+.|.+.|-+--. +.+.. ...+ .++.+++..++.+. .++.+...++.+.++|++.|.+..
T Consensus 28 ~~~~~~~~~A~~~~~~GA~~l~v~~~--~~~~~--g~~~-~~~~i~~~v~iPi~~~~~i~~~~~v~~~~~~Gad~v~l~~ 102 (217)
T cd00331 28 REDFDPVEIAKAYEKAGAAAISVLTE--PKYFQ--GSLE-DLRAVREAVSLPVLRKDFIIDPYQIYEARAAGADAVLLIV 102 (217)
T ss_pred CCCCCHHHHHHHHHHcCCCEEEEEeC--ccccC--CCHH-HHHHHHHhcCCCEEECCeecCHHHHHHHHHcCCCEEEEee
Confidence 44567889999999999999966321 00000 1222 23344332233222 234556689999999999999865
Q ss_pred CCchHHHHhhhcCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHHCCcCEEEEcCCCCC
Q 018252 223 SASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGV 302 (359)
Q Consensus 223 s~S~~~~~~n~~~t~~e~l~~i~~~i~~Ak~~G~~V~~~is~~fg~~~~~r~~~e~l~~~a~~l~~~Gad~I~L~DT~G~ 302 (359)
+.-+ .+.++++++.++..|+.+.+.+ +++++ ++++.+.|++.|.+-...|.
T Consensus 103 ~~~~--------------~~~~~~~~~~~~~~g~~~~v~v-----------~~~~e----~~~~~~~g~~~i~~t~~~~~ 153 (217)
T cd00331 103 AALD--------------DEQLKELYELARELGMEVLVEV-----------HDEEE----LERALALGAKIIGINNRDLK 153 (217)
T ss_pred ccCC--------------HHHHHHHHHHHHHcCCeEEEEE-----------CCHHH----HHHHHHcCCCEEEEeCCCcc
Confidence 4211 1345677777888899874322 24444 56677789999988877777
Q ss_pred CcHHHHHHHHHHHHHhCC-CceEEEEeCCCCCc-HHHHHHHHHHcCCCEEe
Q 018252 303 GTPGTVVPMLEAVMAVVP-VEKLAVHLHDTYGQ-SLPNILISLQVSPMHAK 351 (359)
Q Consensus 303 ~~P~~v~~lv~~l~~~~p-~~~L~~H~HNd~GL-AlANalaAv~AGa~~ID 351 (359)
..+..+ +++..+++.+| ++++-.= -|- ...++..++++||+.|=
T Consensus 154 ~~~~~~-~~~~~l~~~~~~~~pvia~----gGI~s~edi~~~~~~Ga~gvi 199 (217)
T cd00331 154 TFEVDL-NTTERLAPLIPKDVILVSE----SGISTPEDVKRLAEAGADAVL 199 (217)
T ss_pred ccCcCH-HHHHHHHHhCCCCCEEEEE----cCCCCHHHHHHHHHcCCCEEE
Confidence 666666 66677777763 3343321 122 24788899999998764
No 162
>PRK13307 bifunctional formaldehyde-activating enzyme/3-hexulose-6-phosphate synthase; Provisional
Probab=96.04 E-value=0.71 Score=47.09 Aligned_cols=166 Identities=16% Similarity=0.048 Sum_probs=102.3
Q ss_pred CCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcCCCCCHHHHHHHhhhc-CCCeEEEEeC--Ch-Hh-HHHHHHcCCCEEE
Q 018252 145 VPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDL-EGARLPVLTP--NL-KG-FEAAIAAGAKEVA 219 (359)
Q Consensus 145 ~~~~~k~~ia~~L~~aGv~~IEvG~fvspk~vPq~~D~~ev~~~l~~~-~~~~l~~l~~--n~-~g-ie~a~~aGv~~V~ 219 (359)
.+.++-+++++.|.+.++..||+|.+--.. .. -++.+.+++. ++..+.+-.- +. .- ++.+.++|++.+.
T Consensus 182 ~~~~~A~~i~~~l~~~~~~~iKvG~~L~~~-----~G-~~iVk~Lr~~~~~~~I~~DLK~~Di~~~vv~~~a~aGAD~vT 255 (391)
T PRK13307 182 PDLEEVERVLSQLPKSDHIIIEAGTPLIKK-----FG-LEVISKIREVRPDAFIVADLKTLDTGNLEARMAADATADAVV 255 (391)
T ss_pred CCHHHHHHHHHhcccccceEEEECHHHHHH-----hC-HHHHHHHHHhCCCCeEEEEecccChhhHHHHHHHhcCCCEEE
Confidence 678889999999998888899999731100 01 2334555543 5544443321 22 22 6778889999888
Q ss_pred EecCCchHHHHhhhcCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHHCCcCEEEEc--
Q 018252 220 IFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLG-- 297 (359)
Q Consensus 220 i~~s~S~~~~~~n~~~t~~e~l~~i~~~i~~Ak~~G~~V~~~is~~fg~~~~~r~~~e~l~~~a~~l~~~Gad~I~L~-- 297 (359)
+...+.. +.+..+++.+|++|+++.+.++ ++ -++. +.++.+ ..++|.|.+.
T Consensus 256 VH~ea~~---------------~ti~~ai~~akk~GikvgVD~l----np----~tp~---e~i~~l-~~~vD~Vllht~ 308 (391)
T PRK13307 256 ISGLAPI---------------STIEKAIHEAQKTGIYSILDML----NV----EDPV---KLLESL-KVKPDVVELHRG 308 (391)
T ss_pred EeccCCH---------------HHHHHHHHHHHHcCCEEEEEEc----CC----CCHH---HHHHHh-hCCCCEEEEccc
Confidence 8654322 2355788899999998754332 11 1222 233333 5688887766
Q ss_pred -CCCCCCcHHHHHHHHHHHHHhCCCceEEEEeCCCCCcHHHHHHHHHHcCCCEE
Q 018252 298 -DTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQVSPMHA 350 (359)
Q Consensus 298 -DT~G~~~P~~v~~lv~~l~~~~p~~~L~~H~HNd~GLAlANalaAv~AGa~~I 350 (359)
|.-+... .-+.++.+++..++.+|.+=+ |....|.-.++++||+++
T Consensus 309 vdp~~~~~---~~~kI~~ikk~~~~~~I~VdG----GI~~eti~~l~~aGADiv 355 (391)
T PRK13307 309 IDEEGTEH---AWGNIKEIKKAGGKILVAVAG----GVRVENVEEALKAGADIL 355 (391)
T ss_pred cCCCcccc---hHHHHHHHHHhCCCCcEEEEC----CcCHHHHHHHHHcCCCEE
Confidence 3323322 223566677654445566543 888888889999999976
No 163
>cd00739 DHPS DHPS subgroup of Pterin binding enzymes. DHPS (dihydropteroate synthase), a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS.
Probab=95.97 E-value=1.6 Score=41.87 Aligned_cols=196 Identities=16% Similarity=0.145 Sum_probs=110.1
Q ss_pred ccCCCCCCCCCHHHHHHHHHHHHhCCCCEEEEecc-CCCCCcCCCCCHHH---HHHHhhhc---CCCeEEEEeCChHhHH
Q 018252 136 DGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSF-VSPKWVPQLADARD---VMEAVRDL---EGARLPVLTPNLKGFE 208 (359)
Q Consensus 136 DG~Q~~~~~~~~~~k~~ia~~L~~aGv~~IEvG~f-vspk~vPq~~D~~e---v~~~l~~~---~~~~l~~l~~n~~gie 208 (359)
|-++-.+..++.+.-++.++.+.+.|.++|++|.- ..|..- .....+| +...++.+ .++.++.=+.+.+-++
T Consensus 12 dSF~dg~~~~~~~~~~~~a~~~~~~GAdiIDIG~~st~p~~~-~i~~~~E~~rl~~~v~~i~~~~~~plSIDT~~~~v~e 90 (257)
T cd00739 12 DSFSDGGRFLSLDKAVAHAEKMIAEGADIIDIGGESTRPGAD-PVSVEEELERVIPVLEALRGELDVLISVDTFRAEVAR 90 (257)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCcCCCCCC-CCCHHHHHHHHHHHHHHHHhcCCCcEEEeCCCHHHHH
Confidence 33444456688999999999999999999999962 333321 1122222 22223322 2444444445778899
Q ss_pred HHHHcCCCEEEEecCCchHHHHhhhcCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCC----------CCHHH
Q 018252 209 AAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGA----------IPPSK 278 (359)
Q Consensus 209 ~a~~aGv~~V~i~~s~S~~~~~~n~~~t~~e~l~~i~~~i~~Ak~~G~~V~~~is~~fg~~~~~r----------~~~e~ 278 (359)
.|++.|++.|+=... . ..+ ..+++.++++|..+.+ ++.-+.|..-. --.++
T Consensus 91 ~al~~G~~iINdisg---~--------~~~------~~~~~l~~~~~~~vV~--m~~~g~p~~~~~~~~~~~~~~~~~~~ 151 (257)
T cd00739 91 AALEAGADIINDVSG---G--------SDD------PAMLEVAAEYGAPLVL--MHMRGTPKTMQENPYYEDVVDEVLSF 151 (257)
T ss_pred HHHHhCCCEEEeCCC---C--------CCC------hHHHHHHHHcCCCEEE--ECCCCCCcccccCCCcccHHHHHHHH
Confidence 999999776653211 0 000 1345566677877643 22212221100 01134
Q ss_pred HHHHHHHHHHCCcC--EEEEcCCCCCC-cHHHHHHHHHHHHH----hCCCceEEE------------EeCCCCCcHHHHH
Q 018252 279 VAYVAKELHDMGCF--EISLGDTIGVG-TPGTVVPMLEAVMA----VVPVEKLAV------------HLHDTYGQSLPNI 339 (359)
Q Consensus 279 l~~~a~~l~~~Gad--~I~L~DT~G~~-~P~~v~~lv~~l~~----~~p~~~L~~------------H~HNd~GLAlANa 339 (359)
+.+.++.+.++|+. .|.+==-+|.. ++++-.++++.++. .+| +-+++ ..++..+-.+|.+
T Consensus 152 ~~~~i~~~~~~Gi~~~~Ii~DPg~gf~ks~~~~~~~l~~i~~l~~~~~p-il~G~SrkSfig~~~~~~~~~r~~~t~~~~ 230 (257)
T cd00739 152 LEARLEAAESAGVARNRIILDPGIGFGKTPEHNLELLRRLDELKQLGLP-VLVGASRKSFIGALLGREPKDRDWGTLALS 230 (257)
T ss_pred HHHHHHHHHHcCCCHHHEEEecCCCcccCHHHHHHHHHHHHHHHhCCCc-EEEEecccHHHHHhcCCCccccchhHHHHH
Confidence 56666778889985 55542223432 24444555555442 133 22332 3456667778888
Q ss_pred HHHHHcCCCEEec
Q 018252 340 LISLQVSPMHAKP 352 (359)
Q Consensus 340 laAv~AGa~~ID~ 352 (359)
..|++.||++|=+
T Consensus 231 ~~~~~~Ga~iiRv 243 (257)
T cd00739 231 ALAAANGADIVRV 243 (257)
T ss_pred HHHHHcCCCEEEe
Confidence 8899999998754
No 164
>TIGR02668 moaA_archaeal probable molybdenum cofactor biosynthesis protein A, archaeal. This model describes an archaeal family related, and predicted to be functionally equivalent, to molybdenum cofactor biosynthesis protein A (MoaA) of bacteria (see TIGR02666).
Probab=95.87 E-value=0.69 Score=44.73 Aligned_cols=135 Identities=19% Similarity=0.175 Sum_probs=86.2
Q ss_pred CCCCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcCCCCCHHHHHHHhhhcCCCeEEEEeCCh----HhHHHHHHcCCCEE
Q 018252 143 NTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPVLTPNL----KGFEAAIAAGAKEV 218 (359)
Q Consensus 143 ~~~~~~~k~~ia~~L~~aGv~~IEvG~fvspk~vPq~~D~~ev~~~l~~~~~~~l~~l~~n~----~gie~a~~aGv~~V 218 (359)
..++.++..++++.+.+.|++.|-++. -.|-.- .+..++++.+++. +..-..++.|- +-++...++|++.|
T Consensus 38 ~~ls~eei~~~i~~~~~~gi~~I~~tG-GEPll~---~~l~~iv~~l~~~-g~~~v~i~TNG~ll~~~~~~l~~~g~~~v 112 (302)
T TIGR02668 38 NELSPEEIERIVRVASEFGVRKVKITG-GEPLLR---KDLIEIIRRIKDY-GIKDVSMTTNGILLEKLAKKLKEAGLDRV 112 (302)
T ss_pred CcCCHHHHHHHHHHHHHcCCCEEEEEC-cccccc---cCHHHHHHHHHhC-CCceEEEEcCchHHHHHHHHHHHCCCCEE
Confidence 358899999999999999999988754 222111 2445556665543 44223444442 33455667899999
Q ss_pred EEecCCc--hHHHHhhhcCCHHHHHHHHHHHHHHHHhCCCc-EEEEEeeeecCCCCCCCCHHHHHHHHHHHHHCCcC
Q 018252 219 AIFASAS--EAFSKSNINCSIEDSLVRYRAVAHAAKVLSIP-VRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCF 292 (359)
Q Consensus 219 ~i~~s~S--~~~~~~n~~~t~~e~l~~i~~~i~~Ak~~G~~-V~~~is~~fg~~~~~r~~~e~l~~~a~~l~~~Gad 292 (359)
.+.+... +.|.. ++. ...++.+.+.++.++++|+. +..++. +. + -.+.+++.++++.+.+.|++
T Consensus 113 ~iSld~~~~~~~~~--i~~--~~~~~~vl~~i~~~~~~G~~~v~i~~v--~~-~---g~n~~ei~~~~~~~~~~g~~ 179 (302)
T TIGR02668 113 NVSLDTLDPEKYKK--ITG--RGALDRVIEGIESAVDAGLTPVKLNMV--VL-K---GINDNEIPDMVEFAAEGGAI 179 (302)
T ss_pred EEEecCCCHHHhhh--ccC--CCcHHHHHHHHHHHHHcCCCcEEEEEE--Ee-C---CCCHHHHHHHHHHHHhcCCE
Confidence 9876543 23322 222 23466677788888889986 655543 21 1 14667889999999999986
No 165
>TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ. One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift.
Probab=95.85 E-value=0.33 Score=50.18 Aligned_cols=156 Identities=13% Similarity=0.169 Sum_probs=95.7
Q ss_pred CCCHHHHHHHHHHHHhC--CCCEEEEec--cCCCCCcCCCCCHHHHHHHhhhcCCCeEEEEeC---ChHhHHHHHHcCCC
Q 018252 144 TVPTGVKVELIRRLVSS--GLPVVEATS--FVSPKWVPQLADARDVMEAVRDLEGARLPVLTP---NLKGFEAAIAAGAK 216 (359)
Q Consensus 144 ~~~~~~k~~ia~~L~~a--Gv~~IEvG~--fvspk~vPq~~D~~ev~~~l~~~~~~~l~~l~~---n~~gie~a~~aGv~ 216 (359)
..+.+..++=++.+.+. |++.|-++- |... .....++.+.+++. +....+.++ +.+-++...++|+.
T Consensus 226 ~rs~e~V~~Ei~~~~~~~~~~~~i~f~Dd~f~~~-----~~~~~~l~~~l~~~-~i~~~~~~~~~~~~e~l~~l~~aG~~ 299 (472)
T TIGR03471 226 TRSAESVIEEVKYALENFPEVREFFFDDDTFTDD-----KPRAEEIARKLGPL-GVTWSCNARANVDYETLKVMKENGLR 299 (472)
T ss_pred eCCHHHHHHHHHHHHHhcCCCcEEEEeCCCCCCC-----HHHHHHHHHHHhhc-CceEEEEecCCCCHHHHHHHHHcCCC
Confidence 35777777777777664 788776542 2110 01123444444432 344444444 34567888889999
Q ss_pred EEEEec-CCchHHHHhhhcCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHHCCcCEEE
Q 018252 217 EVAIFA-SASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEIS 295 (359)
Q Consensus 217 ~V~i~~-s~S~~~~~~n~~~t~~e~l~~i~~~i~~Ak~~G~~V~~~is~~fg~~~~~r~~~e~l~~~a~~l~~~Gad~I~ 295 (359)
.|.+-+ +.|+-.. .++++.. ..+.+.++++.++++|+.+.++++ +|.|.+ +++.+.+..+.+.+.+++.+.
T Consensus 300 ~v~iGiES~s~~~L-~~~~K~~--~~~~~~~~i~~~~~~Gi~v~~~~I--iGlPge---t~e~~~~ti~~~~~l~~~~~~ 371 (472)
T TIGR03471 300 LLLVGYESGDQQIL-KNIKKGL--TVEIARRFTRDCHKLGIKVHGTFI--LGLPGE---TRETIRKTIDFAKELNPHTIQ 371 (472)
T ss_pred EEEEcCCCCCHHHH-HHhcCCC--CHHHHHHHHHHHHHCCCeEEEEEE--EeCCCC---CHHHHHHHHHHHHhcCCCcee
Confidence 988855 4444332 3455432 245567888999999999888776 787765 567777777778888887664
Q ss_pred EcCCCCCCcHHHHHHHHHHHHH
Q 018252 296 LGDTIGVGTPGTVVPMLEAVMA 317 (359)
Q Consensus 296 L~DT~G~~~P~~v~~lv~~l~~ 317 (359)
+ ...+|.-=..+.+.+++
T Consensus 372 ~----~~l~P~PGT~l~~~~~~ 389 (472)
T TIGR03471 372 V----SLAAPYPGTELYDQAKQ 389 (472)
T ss_pred e----eecccCCCcHHHHHHHH
Confidence 3 44555544455555554
No 166
>TIGR00539 hemN_rel putative oxygen-independent coproporphyrinogen III oxidase. Experimentally determined examples of oxygen-independent coproporphyrinogen III oxidase, an enzyme that replaces HemF function under anaerobic conditions, belong to a family of proteins described by the model hemN. This model, hemN_rel, models a closely related protein, shorter at the amino end and lacking the region containing the motif PYRT[SC]YP found in members of the hemN family. Several species, including E. coli, Helicobacter pylori, Aquifex aeolicus, and Chlamydia trachomatis, have members of both this family and the E. coli hemN family. The member of this family from Bacillus subtilis was shown to complement an hemF/hemN double mutant of Salmonella typimurium and to prevent accumulation of coproporphyrinogen III under anaerobic conditions, but the exact role of this protein is still uncertain. It is found in a number of species that do not synthesize heme de novo.
Probab=95.84 E-value=0.55 Score=46.84 Aligned_cols=143 Identities=10% Similarity=0.075 Sum_probs=86.0
Q ss_pred CCHHHHHHHHHHHHhCC---CCEEEEeccCCCCCcCCCCCHHHHHHHhhh----cCCCeEEEEe-C---ChHhHHHHHHc
Q 018252 145 VPTGVKVELIRRLVSSG---LPVVEATSFVSPKWVPQLADARDVMEAVRD----LEGARLPVLT-P---NLKGFEAAIAA 213 (359)
Q Consensus 145 ~~~~~k~~ia~~L~~aG---v~~IEvG~fvspk~vPq~~D~~ev~~~l~~----~~~~~l~~l~-~---n~~gie~a~~a 213 (359)
+..+...+|...+...| ++.|=+|.. .|...+ ..+.+++++.+++ .++.++..-+ | +.+.++...++
T Consensus 32 y~~~l~~Ei~~~~~~~~~~~v~~i~~GGG-tPs~l~-~~~l~~ll~~i~~~~~~~~~~eitie~np~~lt~e~l~~l~~~ 109 (360)
T TIGR00539 32 YTQALCQDLKHALSQTDQEPLESIFIGGG-TPNTLS-VEAFERLFESIYQHASLSDDCEITTEANPELITAEWCKGLKGA 109 (360)
T ss_pred HHHHHHHHHHHHHHhcCCCcccEEEeCCC-chhcCC-HHHHHHHHHHHHHhCCCCCCCEEEEEeCCCCCCHHHHHHHHHc
Confidence 34445555555555555 566666542 121110 0233445555543 2456666655 3 33567888889
Q ss_pred CCCEEEEecCCchHHHHhhhcCCHHHHHHHHHHHHHHHHhCCCc-EEEEEeeeecCCCCCCCCHHHHHHHHHHHHHCCcC
Q 018252 214 GAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIP-VRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCF 292 (359)
Q Consensus 214 Gv~~V~i~~s~S~~~~~~n~~~t~~e~l~~i~~~i~~Ak~~G~~-V~~~is~~fg~~~~~r~~~e~l~~~a~~l~~~Gad 292 (359)
|+.+|.+-+..-+.-....+|+. ...+.+.++++.+++.|+. +.+.++ +|.|.. +.+.+.+.++.+.+.|++
T Consensus 110 Gv~risiGvqS~~~~~l~~lgR~--~~~~~~~~ai~~l~~~G~~~v~~dli--~GlPgq---t~~~~~~~l~~~~~l~~~ 182 (360)
T TIGR00539 110 GINRLSLGVQSFRDDKLLFLGRQ--HSAKNIAPAIETALKSGIENISLDLM--YGLPLQ---TLNSLKEELKLAKELPIN 182 (360)
T ss_pred CCCEEEEecccCChHHHHHhCCC--CCHHHHHHHHHHHHHcCCCeEEEecc--CCCCCC---CHHHHHHHHHHHHccCCC
Confidence 99999987643322222344542 2245566788889999996 656665 777643 777888888889999999
Q ss_pred EEEE
Q 018252 293 EISL 296 (359)
Q Consensus 293 ~I~L 296 (359)
.|.+
T Consensus 183 ~is~ 186 (360)
T TIGR00539 183 HLSA 186 (360)
T ss_pred EEEe
Confidence 8764
No 167
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=95.82 E-value=0.2 Score=48.36 Aligned_cols=102 Identities=20% Similarity=0.208 Sum_probs=69.0
Q ss_pred HHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHHCCcCEEEE----------cCCCCCCcHH
Q 018252 237 IEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISL----------GDTIGVGTPG 306 (359)
Q Consensus 237 ~~e~l~~i~~~i~~Ak~~G~~V~~~is~~fg~~~~~r~~~e~l~~~a~~l~~~Gad~I~L----------~DT~G~~~P~ 306 (359)
.++.++.+.+.. ++.+.++.+.|. + .+++.+.+.++.+.++|+|.|.| .+..| ..|.
T Consensus 74 ~~~~~~~~~~~~---~~~~~p~ivsi~---g------~~~~~~~~~a~~~~~~G~d~iElN~~cP~~~~~g~~~~-~~~~ 140 (296)
T cd04740 74 VEAFLEELLPWL---REFGTPVIASIA---G------STVEEFVEVAEKLADAGADAIELNISCPNVKGGGMAFG-TDPE 140 (296)
T ss_pred HHHHHHHHHHHh---hcCCCcEEEEEe---c------CCHHHHHHHHHHHHHcCCCEEEEECCCCCCCCCccccc-CCHH
Confidence 344455444432 234566655553 2 36889999999999999997766 22233 5789
Q ss_pred HHHHHHHHHHHhCCCceEEEEeCCCCCcHHHHHHHHHHcCCCEEec
Q 018252 307 TVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQVSPMHAKP 352 (359)
Q Consensus 307 ~v~~lv~~l~~~~p~~~L~~H~HNd~GLAlANalaAv~AGa~~ID~ 352 (359)
.+.++++++++.+. ++|.+-.--+..-...-+..+.++||+.|+.
T Consensus 141 ~~~eiv~~vr~~~~-~Pv~vKl~~~~~~~~~~a~~~~~~G~d~i~~ 185 (296)
T cd04740 141 AVAEIVKAVKKATD-VPVIVKLTPNVTDIVEIARAAEEAGADGLTL 185 (296)
T ss_pred HHHHHHHHHHhccC-CCEEEEeCCCchhHHHHHHHHHHcCCCEEEE
Confidence 99999999999873 6777766544433445566788899998865
No 168
>COG3473 Maleate cis-trans isomerase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=95.75 E-value=0.46 Score=44.49 Aligned_cols=147 Identities=14% Similarity=0.158 Sum_probs=99.2
Q ss_pred HHHHHHHHHHhCCCCEEEEeccCCCCCcCCCCCHHHHHHHhhhcCCCeEEEEeCChHhHHHHHHcCCCEEEEecCCchHH
Q 018252 149 VKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPVLTPNLKGFEAAIAAGAKEVAIFASASEAF 228 (359)
Q Consensus 149 ~k~~ia~~L~~aGv~~IEvG~fvspk~vPq~~D~~ev~~~l~~~~~~~l~~l~~n~~gie~a~~aGv~~V~i~~s~S~~~ 228 (359)
.-.+-|..|.++|++.|-.|+-+.. .+-...-.+++...+.+.. .+.+.++....++.....|+++|.+..|-.+.-
T Consensus 55 ~t~~aAl~Lada~vdvI~Y~CtsgS-~i~G~~~d~ei~~~ie~~~--~v~vvTts~Avv~aL~al~a~ri~vlTPY~~ev 131 (238)
T COG3473 55 YTERAALELADAGVDVIVYGCTSGS-LIGGPGYDKEIAQRIEEAK--GVPVVTTSTAVVEALNALGAQRISVLTPYIDEV 131 (238)
T ss_pred HHHHHHHhcCccccCEEEEecccee-eecCCchhHHHHHHHHhcc--CCceeechHHHHHHHHhhCcceEEEeccchhhh
Confidence 3445567799999999998863211 0101111345666666555 445666766677777778999999988854432
Q ss_pred HHhhhcCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCC---CCCCCHHHHHHHHHHHHHCCcCEEEEcCCCCCCcH
Q 018252 229 SKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPV---EGAIPPSKVAYVAKELHDMGCFEISLGDTIGVGTP 305 (359)
Q Consensus 229 ~~~n~~~t~~e~l~~i~~~i~~Ak~~G~~V~~~is~~fg~~~---~~r~~~e~l~~~a~~l~~~Gad~I~L~DT~G~~~P 305 (359)
+ +..+++....|++|.=..+ .|.++ -+|.+|..+.++++++..-++|.|-+. ++-
T Consensus 132 n---------------~~e~ef~~~~Gfeiv~~~~--Lgi~dn~eigr~~P~~~y~lAk~~~~~~~DaiFiS-----CTn 189 (238)
T COG3473 132 N---------------QREIEFLEANGFEIVDFKG--LGITDNLEIGRQEPWAVYRLAKEVFTPDADAIFIS-----CTN 189 (238)
T ss_pred h---------------hHHHHHHHhCCeEEEEeec--cCCcccchhcccChHHHHHHHHHhcCCCCCeEEEE-----eec
Confidence 2 2456677789998743333 44343 378999999999999999999988776 456
Q ss_pred HHHHHHHHHHHHhCC
Q 018252 306 GTVVPMLEAVMAVVP 320 (359)
Q Consensus 306 ~~v~~lv~~l~~~~p 320 (359)
.+..+.+..+-+..+
T Consensus 190 lRt~eii~~lE~~~G 204 (238)
T COG3473 190 LRTFEIIEKLERDTG 204 (238)
T ss_pred cccHHHHHHHHHHhC
Confidence 667777777776653
No 169
>KOG4175 consensus Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=95.75 E-value=1.1 Score=41.80 Aligned_cols=152 Identities=20% Similarity=0.220 Sum_probs=89.4
Q ss_pred CHHHHHHHHHHHHhCCCCEEEEeccCC-CCC-cCCCC-----------CHHHHHHHhhhc--CCCeEEEEeC---Ch---
Q 018252 146 PTGVKVELIRRLVSSGLPVVEATSFVS-PKW-VPQLA-----------DARDVMEAVRDL--EGARLPVLTP---NL--- 204 (359)
Q Consensus 146 ~~~~k~~ia~~L~~aGv~~IEvG~fvs-pk~-vPq~~-----------D~~ev~~~l~~~--~~~~l~~l~~---n~--- 204 (359)
+.++.++|.+.|...|.++||.|.+-+ |-+ .|... ..+.+++.+++. .++.+....- |.
T Consensus 30 ~v~~T~kilkglq~gG~dIIELGvPfSDp~ADGPtIq~~n~~aL~ng~tl~~i~emvk~ar~~gvt~PIiLmgYYNPIl~ 109 (268)
T KOG4175|consen 30 DVSTTAKILKGLQSGGSDIIELGVPFSDPLADGPTIQAANRRALLNGTTLNSIIEMVKEARPQGVTCPIILMGYYNPILR 109 (268)
T ss_pred cHHHHHHHHHHHhcCCcCeEEecCccCccccCCchhhhhHHHHHHcCCcHHHHHHHHHHhcccCcccceeeeecccHHHh
Confidence 467889999999999999999998533 211 12211 123444545432 2344332221 22
Q ss_pred H----hHHHHHHcCCCEEEEec-CCchHHHHhhhcCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHH
Q 018252 205 K----GFEAAIAAGAKEVAIFA-SASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKV 279 (359)
Q Consensus 205 ~----gie~a~~aGv~~V~i~~-s~S~~~~~~n~~~t~~e~l~~i~~~i~~Ak~~G~~V~~~is~~fg~~~~~r~~~e~l 279 (359)
. -+..|.++|+..+-+.. | . ++...+-++|+++|+....-+ .+.++++-
T Consensus 110 yG~e~~iq~ak~aGanGfiivDlP-------------p----EEa~~~Rne~~k~gislvpLv---------aPsTtdeR 163 (268)
T KOG4175|consen 110 YGVENYIQVAKNAGANGFIIVDLP-------------P----EEAETLRNEARKHGISLVPLV---------APSTTDER 163 (268)
T ss_pred hhHHHHHHHHHhcCCCceEeccCC-------------h----HHHHHHHHHHHhcCceEEEee---------CCCChHHH
Confidence 2 35566778887765532 2 2 234466788999999764322 25566665
Q ss_pred HHHHHHHHHCCcCEEEEcCCCCCCc-----HHHHHHHHHHHHHhCCCceEEE
Q 018252 280 AYVAKELHDMGCFEISLGDTIGVGT-----PGTVVPMLEAVMAVVPVEKLAV 326 (359)
Q Consensus 280 ~~~a~~l~~~Gad~I~L~DT~G~~~-----P~~v~~lv~~l~~~~p~~~L~~ 326 (359)
.++.-.+.+ .-|++.-.+|+.- -..+.+|+..+|+...+.|+.+
T Consensus 164 mell~~~ad---sFiYvVSrmG~TG~~~svn~~l~~L~qrvrk~t~dtPlAV 212 (268)
T KOG4175|consen 164 MELLVEAAD---SFIYVVSRMGVTGTRESVNEKLQSLLQRVRKATGDTPLAV 212 (268)
T ss_pred HHHHHHhhc---ceEEEEEeccccccHHHHHHHHHHHHHHHHHhcCCCceeE
Confidence 555554544 3455555555432 4567788999999876666655
No 170
>cd00423 Pterin_binding Pterin binding enzymes. This family includes dihydropteroate synthase (DHPS) and cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). DHPS, a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS. Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=95.74 E-value=2 Score=41.04 Aligned_cols=136 Identities=21% Similarity=0.191 Sum_probs=78.6
Q ss_pred CCCCCHHHHHHHHHHHHhCCCCEEEEecc-CCCCCcCCC--CCHHHHHHHhhhc---CCCeEEEEeCChHhHHHHHHcCC
Q 018252 142 KNTVPTGVKVELIRRLVSSGLPVVEATSF-VSPKWVPQL--ADARDVMEAVRDL---EGARLPVLTPNLKGFEAAIAAGA 215 (359)
Q Consensus 142 ~~~~~~~~k~~ia~~L~~aGv~~IEvG~f-vspk~vPq~--~D~~ev~~~l~~~---~~~~l~~l~~n~~gie~a~~aGv 215 (359)
+...+.+.-++.++.+.+.|.++|++|.- ..|..-|.- .+.+.+...++.+ .++.++.=+.+.+-++.|++.|+
T Consensus 18 ~~~~~~~~~~~~a~~~~~~GAdiIDvG~~st~p~~~~~~~~~E~~rl~~~v~~l~~~~~~piSIDT~~~~v~~aaL~~g~ 97 (258)
T cd00423 18 GKFLSLDKALEHARRMVEEGADIIDIGGESTRPGAEPVSVEEELERVIPVLRALAGEPDVPISVDTFNAEVAEAALKAGA 97 (258)
T ss_pred cccCCHHHHHHHHHHHHHCCCCEEEECCCcCCCCCCcCCHHHHHHHHHHHHHHHHhcCCCeEEEeCCcHHHHHHHHHhCC
Confidence 44578899999999999999999999973 334322211 1122344444433 24555555567788999999996
Q ss_pred CEEEEecCCchHHHHhhhcCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCC-C-----CCC----HHHHHHHHHH
Q 018252 216 KEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVE-G-----AIP----PSKVAYVAKE 285 (359)
Q Consensus 216 ~~V~i~~s~S~~~~~~n~~~t~~e~l~~i~~~i~~Ak~~G~~V~~~is~~fg~~~~-~-----r~~----~e~l~~~a~~ 285 (359)
+.|+=... . +.. .++++.++++|..+.+ ++.-+.+.. . ... .+++.+.++.
T Consensus 98 ~iINdis~---~------~~~--------~~~~~l~~~~~~~vV~--m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 158 (258)
T cd00423 98 DIINDVSG---G------RGD--------PEMAPLAAEYGAPVVL--MHMDGTPQTMQNNPYYADVVDEVVEFLEERVEA 158 (258)
T ss_pred CEEEeCCC---C------CCC--------hHHHHHHHHcCCCEEE--ECcCCCCcccccCCCcchHHHHHHHHHHHHHHH
Confidence 65543211 0 000 2445666778876632 211111100 0 001 3567777788
Q ss_pred HHHCCc--CEEEE
Q 018252 286 LHDMGC--FEISL 296 (359)
Q Consensus 286 l~~~Ga--d~I~L 296 (359)
+.++|+ +.|.|
T Consensus 159 ~~~~Gi~~~~Iil 171 (258)
T cd00423 159 ATEAGIPPEDIIL 171 (258)
T ss_pred HHHcCCCHHHEEE
Confidence 889995 35554
No 171
>PRK11613 folP dihydropteroate synthase; Provisional
Probab=95.70 E-value=2.3 Score=41.54 Aligned_cols=202 Identities=17% Similarity=0.176 Sum_probs=110.1
Q ss_pred EEEeCCCcccCCCCCCCCCHHHHHHHHHHHHhCCCCEEEEecc-CCCCCcCCCCCHHH---HHHHhhhc---CCCeEEEE
Q 018252 128 KIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSF-VSPKWVPQLADARD---VMEAVRDL---EGARLPVL 200 (359)
Q Consensus 128 ~I~D~TLRDG~Q~~~~~~~~~~k~~ia~~L~~aGv~~IEvG~f-vspk~vPq~~D~~e---v~~~l~~~---~~~~l~~l 200 (359)
=|+.+|+ |-+.--|..++.+.-++-++.|.+.|.++|++|.- ..|..-| ....+| +...++.+ .++.+++=
T Consensus 19 GIlNvTp-DSFsdgg~~~~~~~a~~~a~~~~~~GAdIIDIGgeSTrPg~~~-v~~eeE~~Rv~pvI~~l~~~~~~~ISID 96 (282)
T PRK11613 19 GILNVTP-DSFSDGGTHNSLIDAVKHANLMINAGATIIDVGGESTRPGAAE-VSVEEELDRVIPVVEAIAQRFEVWISVD 96 (282)
T ss_pred EEEcCCC-CCCCCCCCCCCHHHHHHHHHHHHHCCCcEEEECCCCCCCCCCC-CCHHHHHHHHHHHHHHHHhcCCCeEEEE
Confidence 3555544 22222244478999999999999999999999963 2333211 222233 33233322 24444444
Q ss_pred eCChHhHHHHHHcCCCEEEEecCCchHHHHhhhcCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCC--CCC---
Q 018252 201 TPNLKGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEG--AIP--- 275 (359)
Q Consensus 201 ~~n~~gie~a~~aGv~~V~i~~s~S~~~~~~n~~~t~~e~l~~i~~~i~~Ak~~G~~V~~~is~~fg~~~~~--r~~--- 275 (359)
+.+.+-++.|+++|++.|+=..+.++ ++.+ +.++++|..+. +++.-|.|..- ...
T Consensus 97 T~~~~va~~AL~~GadiINDI~g~~d-----------~~~~-------~~~a~~~~~vV--lmh~~g~p~~~~~~~~y~d 156 (282)
T PRK11613 97 TSKPEVIRESAKAGAHIINDIRSLSE-----------PGAL-------EAAAETGLPVC--LMHMQGNPKTMQEAPKYDD 156 (282)
T ss_pred CCCHHHHHHHHHcCCCEEEECCCCCC-----------HHHH-------HHHHHcCCCEE--EEcCCCCCCccccCCCccc
Confidence 45667899999999998764322111 1112 22355666653 33333333211 111
Q ss_pred -----HHHHHHHHHHHHHCCcC--EEEEcCCCCCCc-HHHHHHHHHHHHH--h--CCCceEEE------------EeCCC
Q 018252 276 -----PSKVAYVAKELHDMGCF--EISLGDTIGVGT-PGTVVPMLEAVMA--V--VPVEKLAV------------HLHDT 331 (359)
Q Consensus 276 -----~e~l~~~a~~l~~~Gad--~I~L~DT~G~~~-P~~v~~lv~~l~~--~--~p~~~L~~------------H~HNd 331 (359)
.+++.+.++.+.++|+. .|.|==-.|.+. +++-.++++.+.. . +| +-+++ -..+.
T Consensus 157 v~~~v~~~l~~~i~~a~~~GI~~~~IilDPGiGF~k~~~~n~~ll~~l~~l~~lg~P-ilvg~SRKsfig~~~~~~~~~r 235 (282)
T PRK11613 157 VFAEVNRYFIEQIARCEAAGIAKEKLLLDPGFGFGKNLSHNYQLLARLAEFHHFNLP-LLVGMSRKSMIGQLLNVGPSER 235 (282)
T ss_pred HHHHHHHHHHHHHHHHHHcCCChhhEEEeCCCCcCCCHHHHHHHHHHHHHHHhCCCC-EEEEecccHHHHhhcCCChhhh
Confidence 24667777888899986 555432345433 4555666655543 2 23 12221 12222
Q ss_pred CCcHHHHHHHHHHcCCCEEec
Q 018252 332 YGQSLPNILISLQVSPMHAKP 352 (359)
Q Consensus 332 ~GLAlANalaAv~AGa~~ID~ 352 (359)
..-.+|.+..|+..||++|-+
T Consensus 236 ~~~T~a~~~~a~~~ga~iiRv 256 (282)
T PRK11613 236 LSGSLACAVIAAMQGAQIIRV 256 (282)
T ss_pred hHHHHHHHHHHHHCCCCEEEc
Confidence 222366777888899998753
No 172
>smart00518 AP2Ec AP endonuclease family 2. These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites
Probab=95.65 E-value=1.6 Score=41.27 Aligned_cols=172 Identities=17% Similarity=0.141 Sum_probs=87.2
Q ss_pred HHHHHHHhCCCCEEEEeccCCCCCcC-CC--CCHHHHHHHhhhcCCCeEEEEeC--------ChH-----------hHHH
Q 018252 152 ELIRRLVSSGLPVVEATSFVSPKWVP-QL--ADARDVMEAVRDLEGARLPVLTP--------NLK-----------GFEA 209 (359)
Q Consensus 152 ~ia~~L~~aGv~~IEvG~fvspk~vP-q~--~D~~ev~~~l~~~~~~~l~~l~~--------n~~-----------gie~ 209 (359)
+.++.+.+.|++.+|+-....-.+.+ .+ .+.+++.+.+++ .++++++..| +.. .++.
T Consensus 14 ~~~~~~~~~G~~~vel~~~~~~~~~~~~~~~~~~~~l~~~~~~-~gl~ls~h~p~~~nl~s~d~~~r~~~~~~l~~~i~~ 92 (273)
T smart00518 14 KAFIEAVDIGARSFQLFLGNPRSWKGVRLSEETAEKFKEALKE-NNIDVSVHAPYLINLASPDKEKVEKSIERLIDEIKR 92 (273)
T ss_pred HHHHHHHHcCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHH-cCCCEEEECCceecCCCCCHHHHHHHHHHHHHHHHH
Confidence 45677888999999996422111111 11 123444444432 3444554433 111 2344
Q ss_pred HHHcCCCEEEEecCCchHHHHhhhcCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHHC
Q 018252 210 AIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDM 289 (359)
Q Consensus 210 a~~aGv~~V~i~~s~S~~~~~~n~~~t~~e~l~~i~~~i~~Ak~~G~~V~~~is~~fg~~~~~r~~~e~l~~~a~~l~~~ 289 (359)
|.+.|++.|.+..... .....++.++++.+.++.+.+....|...|....+.+..--.+++.+.++++.+...
T Consensus 93 A~~lGa~~vv~h~g~~-------~~~~~e~~~~~~~~~l~~l~~~~~gv~l~lEn~~~~~~~~~~~~~~~~~ll~~v~~~ 165 (273)
T smart00518 93 CEELGIKALVFHPGSY-------LKQSKEEALNRIIESLNEVIDETKGVVILLETTAGKGSQIGSTFEDLKEIIDLIKEL 165 (273)
T ss_pred HHHcCCCEEEEccccc-------cCCCHHHHHHHHHHHHHHHHhccCCcEEEEeccCCCCCccCCCHHHHHHHHHhcCCC
Confidence 5557999887754321 122345555555444444332222233344422221111123677777777765431
Q ss_pred CcCEEEE-cCCC-----CC--CcHHHHHHHHHHHHHhCC-CceEEEEeCCCCC
Q 018252 290 GCFEISL-GDTI-----GV--GTPGTVVPMLEAVMAVVP-VEKLAVHLHDTYG 333 (359)
Q Consensus 290 Gad~I~L-~DT~-----G~--~~P~~v~~lv~~l~~~~p-~~~L~~H~HNd~G 333 (359)
+.+.+ -|+. |. .+|..+.++++.+.+.++ +....+|+||+.|
T Consensus 166 --~~~g~~lD~gH~~~~g~d~~~~~~~~~~i~~~~~~~g~~~I~~vHl~D~~~ 216 (273)
T smart00518 166 --DRIGVCIDTCHIFAAGYDINTVEGFEKVLEEFENVLGLEYLKAIHLNDSKI 216 (273)
T ss_pred --CCeEEEEEccchhhccCCCCCHHHHHHHHHHHHHHhCHHhhceEEeecCCC
Confidence 11222 2322 22 247788888888877665 4578999999864
No 173
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=95.64 E-value=0.51 Score=45.02 Aligned_cols=150 Identities=14% Similarity=0.130 Sum_probs=86.5
Q ss_pred CCCCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcCCCCCHHHHHHHhhhcCCCeEEEEeCChHhHHHHHHcCCCEEEEec
Q 018252 143 NTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPVLTPNLKGFEAAIAAGAKEVAIFA 222 (359)
Q Consensus 143 ~~~~~~~k~~ia~~L~~aGv~~IEvG~fvspk~vPq~~D~~ev~~~l~~~~~~~l~~l~~n~~gie~a~~aGv~~V~i~~ 222 (359)
..|+.++-.++.++..+.|+..+---+ | .++++...+.|++.+.+.-
T Consensus 51 ~el~~e~~~~L~~~~~~~gi~f~stpf-----------d----------------------~~s~d~l~~~~~~~~KIaS 97 (241)
T PF03102_consen 51 LELSEEQHKELFEYCKELGIDFFSTPF-----------D----------------------EESVDFLEELGVPAYKIAS 97 (241)
T ss_dssp HSS-HHHHHHHHHHHHHTT-EEEEEE------------S----------------------HHHHHHHHHHT-SEEEE-G
T ss_pred hcCCHHHHHHHHHHHHHcCCEEEECCC-----------C----------------------HHHHHHHHHcCCCEEEecc
Confidence 357888888888888888876654333 2 2234444455666666632
Q ss_pred CCchHHHHhhhcCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHHCCcCEEEEc-CCCC
Q 018252 223 SASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLG-DTIG 301 (359)
Q Consensus 223 s~S~~~~~~n~~~t~~e~l~~i~~~i~~Ak~~G~~V~~~is~~fg~~~~~r~~~e~l~~~a~~l~~~Gad~I~L~-DT~G 301 (359)
. ++ .| .++++++.+.|.++. || .|..+.+++.+.++.+.+.|...|.|- =+.+
T Consensus 98 ~--dl---~n------------~~lL~~~A~tgkPvI--lS-------TG~stl~EI~~Av~~~~~~~~~~l~llHC~s~ 151 (241)
T PF03102_consen 98 G--DL---TN------------LPLLEYIAKTGKPVI--LS-------TGMSTLEEIERAVEVLREAGNEDLVLLHCVSS 151 (241)
T ss_dssp G--GT---T-------------HHHHHHHHTT-S-EE--EE--------TT--HHHHHHHHHHHHHHCT--EEEEEE-SS
T ss_pred c--cc---cC------------HHHHHHHHHhCCcEE--EE-------CCCCCHHHHHHHHHHHHhcCCCCEEEEecCCC
Confidence 1 11 11 155666667888873 22 246788999999998877776644443 2334
Q ss_pred CCcHHHHH--HHHHHHHHhCCCceEEEEeCCCCCcHHHHHHHHHHcCCCEEeceee
Q 018252 302 VGTPGTVV--PMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQVSPMHAKPCFT 355 (359)
Q Consensus 302 ~~~P~~v~--~lv~~l~~~~p~~~L~~H~HNd~GLAlANalaAv~AGa~~ID~tl~ 355 (359)
+=+|.+=. ..+..+++.+| .++||=-|-. | ..-+++|+..||.+|+==++
T Consensus 152 YP~~~e~~NL~~i~~L~~~f~-~~vG~SDHt~-g--~~~~~~AvalGA~vIEKHfT 203 (241)
T PF03102_consen 152 YPTPPEDVNLRVIPTLKERFG-VPVGYSDHTD-G--IEAPIAAVALGARVIEKHFT 203 (241)
T ss_dssp SS--GGG--TTHHHHHHHHST-SEEEEEE-SS-S--SHHHHHHHHTT-SEEEEEB-
T ss_pred CCCChHHcChHHHHHHHHhcC-CCEEeCCCCC-C--cHHHHHHHHcCCeEEEEEEE
Confidence 44444433 45788999999 7999999987 4 45578999999999975443
No 174
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=95.63 E-value=0.61 Score=45.54 Aligned_cols=140 Identities=16% Similarity=0.060 Sum_probs=87.1
Q ss_pred HHHHHHcCCCEEEEecCC--------chHHHH--hhhcCCHHHHHHHHHHHHHHHHhC---CCcEEEEEeeeecCCCCCC
Q 018252 207 FEAAIAAGAKEVAIFASA--------SEAFSK--SNINCSIEDSLVRYRAVAHAAKVL---SIPVRGYVSCVVGCPVEGA 273 (359)
Q Consensus 207 ie~a~~aGv~~V~i~~s~--------S~~~~~--~n~~~t~~e~l~~i~~~i~~Ak~~---G~~V~~~is~~fg~~~~~r 273 (359)
.+++.++|.|.|.+...- |+..++ ..+|-+.++-.+.+.++++.+|+. ++.+.+-++.... ..+.
T Consensus 147 A~~a~~aGfDgveih~~~gyL~~qFlsp~~n~R~d~yGgs~enr~r~~~eii~avr~~~g~d~~i~vris~~~~--~~~g 224 (327)
T cd02803 147 ARRAKEAGFDGVEIHGAHGYLLSQFLSPYTNKRTDEYGGSLENRARFLLEIVAAVREAVGPDFPVGVRLSADDF--VPGG 224 (327)
T ss_pred HHHHHHcCCCEEEEcchhhhHHHHhcCccccCCCcccCCCHHHHHHHHHHHHHHHHHHcCCCceEEEEechhcc--CCCC
Confidence 456677899988776532 232222 234666777667777777777764 3344444442211 1123
Q ss_pred CCHHHHHHHHHHHHHCCcCEEEEcCCCCCCc----------HHHHHHHHHHHHHhCCCceEEEEeCCCCCcHHHHHHHHH
Q 018252 274 IPPSKVAYVAKELHDMGCFEISLGDTIGVGT----------PGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISL 343 (359)
Q Consensus 274 ~~~e~l~~~a~~l~~~Gad~I~L~DT~G~~~----------P~~v~~lv~~l~~~~p~~~L~~H~HNd~GLAlANalaAv 343 (359)
.+++...++++.+.++|+|-|.+........ +....++++.+++.++ ++|..-.--+ ....+..++
T Consensus 225 ~~~~e~~~la~~l~~~G~d~i~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~~-iPVi~~Ggi~---t~~~a~~~l 300 (327)
T cd02803 225 LTLEEAIEIAKALEEAGVDALHVSGGSYESPPPIIPPPYVPEGYFLELAEKIKKAVK-IPVIAVGGIR---DPEVAEEIL 300 (327)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEeCCCCCcccccccCCCCCCcchhHHHHHHHHHHCC-CCEEEeCCCC---CHHHHHHHH
Confidence 6789999999999999999998765432211 1334467788888775 4555433221 256677888
Q ss_pred Hc-CCCEEec
Q 018252 344 QV-SPMHAKP 352 (359)
Q Consensus 344 ~A-Ga~~ID~ 352 (359)
+. |||.|-.
T Consensus 301 ~~g~aD~V~i 310 (327)
T cd02803 301 AEGKADLVAL 310 (327)
T ss_pred HCCCCCeeee
Confidence 88 6888754
No 175
>PRK09722 allulose-6-phosphate 3-epimerase; Provisional
Probab=95.61 E-value=0.79 Score=43.40 Aligned_cols=170 Identities=12% Similarity=0.099 Sum_probs=99.9
Q ss_pred HHHHHHHhCCCCEEEE----eccCCCCCcCCCCCHHHHHHHhhhcCC--CeEEEEeCCh-HhHHHHHHcCCCEEEEecCC
Q 018252 152 ELIRRLVSSGLPVVEA----TSFVSPKWVPQLADARDVMEAVRDLEG--ARLPVLTPNL-KGFEAAIAAGAKEVAIFASA 224 (359)
Q Consensus 152 ~ia~~L~~aGv~~IEv----G~fvspk~vPq~~D~~ev~~~l~~~~~--~~l~~l~~n~-~gie~a~~aGv~~V~i~~s~ 224 (359)
+-++.|.+ |++.+-+ |.|+ |.++-...+++.+++..+ ..+-.++.|. +-++..+++|++.|.+..-+
T Consensus 19 ~el~~l~~-g~d~lH~DiMDG~FV-----PN~tfg~~~i~~ir~~t~~~~DvHLMv~~P~~~i~~~~~aGad~it~H~Ea 92 (229)
T PRK09722 19 EQIEFLNS-KADYFHIDIMDGHFV-----PNLTLSPFFVSQVKKLASKPLDVHLMVTDPQDYIDQLADAGADFITLHPET 92 (229)
T ss_pred HHHHHHHh-CCCEEEEecccCccC-----CCcccCHHHHHHHHhcCCCCeEEEEEecCHHHHHHHHHHcCCCEEEECccC
Confidence 34456666 8888766 5565 444333445677766443 3444555665 66888899999988885543
Q ss_pred chHHHHhhhcCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHHCCcCEEEEcCCCCCCc
Q 018252 225 SEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGVGT 304 (359)
Q Consensus 225 S~~~~~~n~~~t~~e~l~~i~~~i~~Ak~~G~~V~~~is~~fg~~~~~r~~~e~l~~~a~~l~~~Gad~I~L~DT~G~~~ 304 (359)
+. .....+++++|++|+++...|. | .++.+.+.++...+--.=+=.+. +.-.|-.-
T Consensus 93 ~~---------------~~~~~~i~~Ik~~G~kaGlaln-----P---~T~~~~l~~~l~~vD~VLvMsV~-PGf~GQ~f 148 (229)
T PRK09722 93 IN---------------GQAFRLIDEIRRAGMKVGLVLN-----P---ETPVESIKYYIHLLDKITVMTVD-PGFAGQPF 148 (229)
T ss_pred Cc---------------chHHHHHHHHHHcCCCEEEEeC-----C---CCCHHHHHHHHHhcCEEEEEEEc-CCCcchhc
Confidence 21 1233677888999999865553 2 36777777666633110000121 22333333
Q ss_pred HHHHHHHHHHHHHhCCCceEEEEeCCCCCcHHHHHHHHHHcCCCEEe
Q 018252 305 PGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQVSPMHAK 351 (359)
Q Consensus 305 P~~v~~lv~~l~~~~p~~~L~~H~HNd~GLAlANalaAv~AGa~~ID 351 (359)
-..+.+-++.+++..+.-.+.+..==|=|....|+-...++||+.+=
T Consensus 149 i~~~l~KI~~lr~~~~~~~~~~~IeVDGGI~~~~i~~~~~aGad~~V 195 (229)
T PRK09722 149 IPEMLDKIAELKALRERNGLEYLIEVDGSCNQKTYEKLMEAGADVFI 195 (229)
T ss_pred cHHHHHHHHHHHHHHHhcCCCeEEEEECCCCHHHHHHHHHcCCCEEE
Confidence 34444555556654432122222333778889999999999999884
No 176
>PRK12457 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional
Probab=95.58 E-value=1.8 Score=42.25 Aligned_cols=179 Identities=16% Similarity=0.125 Sum_probs=110.9
Q ss_pred CCHHHHHHHHHHHH----hCCCCEEEEeccC-----CCCCcCCCC--CHHHHHHHhhhcCCCeEEEEeCChHhHHHHHHc
Q 018252 145 VPTGVKVELIRRLV----SSGLPVVEATSFV-----SPKWVPQLA--DARDVMEAVRDLEGARLPVLTPNLKGFEAAIAA 213 (359)
Q Consensus 145 ~~~~~k~~ia~~L~----~aGv~~IEvG~fv-----spk~vPq~~--D~~ev~~~l~~~~~~~l~~l~~n~~gie~a~~a 213 (359)
=+.++.+++++.|. ++|+..+==|+|- ||..+..+. +--.+++.+++.-+..+..=+-+.++++.+.+.
T Consensus 27 Es~e~~~~iA~~lk~i~~~~g~~~~fK~sf~KapRTSp~sFqG~G~eeGL~iL~~vk~~~GlpvvTeV~~~~~~~~~ae~ 106 (281)
T PRK12457 27 ESLDFTLDVCGEYVEVTRKLGIPFVFKASFDKANRSSIHSYRGVGLDEGLRIFEEVKARFGVPVITDVHEVEQAAPVAEV 106 (281)
T ss_pred cCHHHHHHHHHHHHHHHHHCCCcEEeeeccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCceEEEeCCHHHHHHHhhh
Confidence 35678899999876 5999987666652 444333333 223355555555666666655677888888877
Q ss_pred CCCEEEEecCCchHHHHhhhcCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCC-CCCHHHHHHHHHHHHHCCcC
Q 018252 214 GAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEG-AIPPSKVAYVAKELHDMGCF 292 (359)
Q Consensus 214 Gv~~V~i~~s~S~~~~~~n~~~t~~e~l~~i~~~i~~Ak~~G~~V~~~is~~fg~~~~~-r~~~e~l~~~a~~l~~~Gad 292 (359)
+|.+++-+ |+-.|. ++++.+.+.|..|-. --+ -.+|++....++.+.+.|-.
T Consensus 107 -vDilQIgA-----r~~rnt------------dLL~a~~~t~kpV~l---------KrGqf~s~~e~~~aae~i~~~Gn~ 159 (281)
T PRK12457 107 -ADVLQVPA-----FLARQT------------DLVVAIAKTGKPVNI---------KKPQFMSPTQMKHVVSKCREAGND 159 (281)
T ss_pred -CeEEeeCc-----hhhchH------------HHHHHHhccCCeEEe---------cCCCcCCHHHHHHHHHHHHHcCCC
Confidence 78888743 322221 556666666766521 111 14678899999999999999
Q ss_pred EEEEcCCCCC-CcHHHHHHH--HHHHHHhCCCceEEE---Ee-----------CCCCCcHHHHHHHHHHcCCCEE
Q 018252 293 EISLGDTIGV-GTPGTVVPM--LEAVMAVVPVEKLAV---HL-----------HDTYGQSLPNILISLQVSPMHA 350 (359)
Q Consensus 293 ~I~L~DT~G~-~~P~~v~~l--v~~l~~~~p~~~L~~---H~-----------HNd~GLAlANalaAv~AGa~~I 350 (359)
.|.||.=-=. ....-+.++ +..+++..++.|+-+ |. =-++-+-..-+.||+.+|||-+
T Consensus 160 ~vilcERG~~fgy~~~~~D~~~ip~mk~~~t~lPVi~DpSHsvq~p~~~g~~s~G~re~v~~larAAvA~GaDGl 234 (281)
T PRK12457 160 RVILCERGSSFGYDNLVVDMLGFRQMKRTTGDLPVIFDVTHSLQCRDPLGAASGGRRRQVLDLARAGMAVGLAGL 234 (281)
T ss_pred eEEEEeCCCCCCCCCcccchHHHHHHHhhCCCCCEEEeCCccccCCCCCCCCCCCCHHHHHHHHHHHHHhCCCEE
Confidence 9988873211 122222332 234555445556666 54 2233345778999999999865
No 177
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
Probab=95.56 E-value=0.66 Score=43.69 Aligned_cols=169 Identities=18% Similarity=0.163 Sum_probs=108.0
Q ss_pred HHHHHHHHHHHhCCCCEEEE----eccCCCCCcCCCCCHHHHHHHhhhcCC--CeEEEEeCCh-HhHHHHHHcCCCEEEE
Q 018252 148 GVKVELIRRLVSSGLPVVEA----TSFVSPKWVPQLADARDVMEAVRDLEG--ARLPVLTPNL-KGFEAAIAAGAKEVAI 220 (359)
Q Consensus 148 ~~k~~ia~~L~~aGv~~IEv----G~fvspk~vPq~~D~~ev~~~l~~~~~--~~l~~l~~n~-~gie~a~~aGv~~V~i 220 (359)
..-.+-++.+.++|.+.|-+ |.|| |.++--..+.+.++.... ..+--++-+. +-++.-+++|++.|.+
T Consensus 16 ~~l~~el~~~~~agad~iH~DVMDghFV-----PNiTfGp~~v~~l~~~t~~p~DvHLMV~~p~~~i~~fa~agad~It~ 90 (220)
T COG0036 16 ARLGEELKALEAAGADLIHIDVMDGHFV-----PNITFGPPVVKALRKITDLPLDVHLMVENPDRYIEAFAKAGADIITF 90 (220)
T ss_pred hHHHHHHHHHHHcCCCEEEEeccCCCcC-----CCcccCHHHHHHHhhcCCCceEEEEecCCHHHHHHHHHHhCCCEEEE
Confidence 34456677888999999866 4554 455544566777776433 3333445454 6788889999999887
Q ss_pred ecCCchHHHHhhhcCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHHCCcCEEEE----
Q 018252 221 FASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISL---- 296 (359)
Q Consensus 221 ~~s~S~~~~~~n~~~t~~e~l~~i~~~i~~Ak~~G~~V~~~is~~fg~~~~~r~~~e~l~~~a~~l~~~Gad~I~L---- 296 (359)
..-++ ..+.++++++|++|.+....+ +| .|+.+.+..+... +|-|-|
T Consensus 91 H~E~~----------------~~~~r~i~~Ik~~G~kaGv~l-----nP---~Tp~~~i~~~l~~-----vD~VllMsVn 141 (220)
T COG0036 91 HAEAT----------------EHIHRTIQLIKELGVKAGLVL-----NP---ATPLEALEPVLDD-----VDLVLLMSVN 141 (220)
T ss_pred EeccC----------------cCHHHHHHHHHHcCCeEEEEE-----CC---CCCHHHHHHHHhh-----CCEEEEEeEC
Confidence 55321 224477888899999875444 23 3566666666653 443332
Q ss_pred cCCCCCCcHHHHHHHHHHHHHhCCCceEEEEeCCCCCcHHHHHHHHHHcCCCEEe
Q 018252 297 GDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQVSPMHAK 351 (359)
Q Consensus 297 ~DT~G~~~P~~v~~lv~~l~~~~p~~~L~~H~HNd~GLAlANalaAv~AGa~~ID 351 (359)
+.-.|-.--.++-+-++.+++..+... .+-.==|=|.-..|+-.+.+|||+++=
T Consensus 142 PGfgGQ~Fi~~~l~Ki~~lr~~~~~~~-~~~IeVDGGI~~~t~~~~~~AGad~~V 195 (220)
T COG0036 142 PGFGGQKFIPEVLEKIRELRAMIDERL-DILIEVDGGINLETIKQLAAAGADVFV 195 (220)
T ss_pred CCCcccccCHHHHHHHHHHHHHhcccC-CeEEEEeCCcCHHHHHHHHHcCCCEEE
Confidence 333444444556666677777666311 233333779999999999999999753
No 178
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=95.54 E-value=1.2 Score=41.06 Aligned_cols=163 Identities=13% Similarity=0.058 Sum_probs=96.6
Q ss_pred CHHHHHHHHHHHHhCCCCEEEEeccCCCCCcCCCCCHHHHHHHhhhcCCCeEEE-----------Ee-CChHhHHHHHHc
Q 018252 146 PTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPV-----------LT-PNLKGFEAAIAA 213 (359)
Q Consensus 146 ~~~~k~~ia~~L~~aGv~~IEvG~fvspk~vPq~~D~~ev~~~l~~~~~~~l~~-----------l~-~n~~gie~a~~a 213 (359)
+.++-.++++.+.++|..-++++. .+ .++.+++..+..+.. +. +..+.++.+.++
T Consensus 21 ~~~~~~~~a~a~~~~G~~~~~~~~------------~~-~i~~i~~~~~~Pil~~~~~d~~~~~~~~~~~~~~v~~a~~a 87 (221)
T PRK01130 21 SPEIMAAMALAAVQGGAVGIRANG------------VE-DIKAIRAVVDVPIIGIIKRDYPDSEVYITPTLKEVDALAAA 87 (221)
T ss_pred CHHHHHHHHHHHHHCCCeEEEcCC------------HH-HHHHHHHhCCCCEEEEEecCCCCCCceECCCHHHHHHHHHc
Confidence 456789999999999999998753 12 233333322322221 22 345678999999
Q ss_pred CCCEEEEecCCchHHHHhhhcCCHHHHHHHHHHHHHHHHh-CCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHHCCcC
Q 018252 214 GAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKV-LSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCF 292 (359)
Q Consensus 214 Gv~~V~i~~s~S~~~~~~n~~~t~~e~l~~i~~~i~~Ak~-~G~~V~~~is~~fg~~~~~r~~~e~l~~~a~~l~~~Gad 292 (359)
|++.|-+-.+..+.. .+ +.+.++++.+++ .|+.+... -.+++. ++.+.+.|+|
T Consensus 88 Gad~I~~d~~~~~~p----~~-------~~~~~~i~~~~~~~~i~vi~~-----------v~t~ee----~~~a~~~G~d 141 (221)
T PRK01130 88 GADIIALDATLRPRP----DG-------ETLAELVKRIKEYPGQLLMAD-----------CSTLEE----GLAAQKLGFD 141 (221)
T ss_pred CCCEEEEeCCCCCCC----CC-------CCHHHHHHHHHhCCCCeEEEe-----------CCCHHH----HHHHHHcCCC
Confidence 999655543321100 00 123467777888 67765321 234544 3678889999
Q ss_pred EEEEc--CCCCC--CcHHHHHHHHHHHHHhCCCceEEEEeCCCCCcH-HHHHHHHHHcCCCEEec
Q 018252 293 EISLG--DTIGV--GTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQS-LPNILISLQVSPMHAKP 352 (359)
Q Consensus 293 ~I~L~--DT~G~--~~P~~v~~lv~~l~~~~p~~~L~~H~HNd~GLA-lANalaAv~AGa~~ID~ 352 (359)
.|.+. +..|. .....-.++++.+++.+. +++-. ..|.. ..++..++++||+.|=.
T Consensus 142 ~i~~~~~g~t~~~~~~~~~~~~~i~~i~~~~~-iPvia----~GGI~t~~~~~~~l~~GadgV~i 201 (221)
T PRK01130 142 FIGTTLSGYTEETKKPEEPDFALLKELLKAVG-CPVIA----EGRINTPEQAKKALELGAHAVVV 201 (221)
T ss_pred EEEcCCceeecCCCCCCCcCHHHHHHHHHhCC-CCEEE----ECCCCCHHHHHHHHHCCCCEEEE
Confidence 88642 11111 111222467777777653 45554 56774 67889999999987643
No 179
>PRK08673 3-deoxy-7-phosphoheptulonate synthase; Reviewed
Probab=95.54 E-value=1.7 Score=43.39 Aligned_cols=178 Identities=12% Similarity=0.095 Sum_probs=108.5
Q ss_pred CHHHHHHHHHHHHhCCCCEEEEecc---CCCCCcCCCCCHHHHHHHhh---hcCCCeEEEEeCChHhHHHHHHcCCCEEE
Q 018252 146 PTGVKVELIRRLVSSGLPVVEATSF---VSPKWVPQLADARDVMEAVR---DLEGARLPVLTPNLKGFEAAIAAGAKEVA 219 (359)
Q Consensus 146 ~~~~k~~ia~~L~~aGv~~IEvG~f---vspk~vPq~~D~~ev~~~l~---~~~~~~l~~l~~n~~gie~a~~aGv~~V~ 219 (359)
+.++.+++|+.|.++|.+.+-.|.| .+|...-.+. ++=++.+. +-.+..+..=+-+...++.+.+. ++.+.
T Consensus 105 s~e~~~~~A~~lk~~ga~~~r~~~fKpRTsp~sf~G~g--~~gL~~L~~~~~~~Gl~v~tev~d~~~~~~l~~~-vd~lq 181 (335)
T PRK08673 105 SEEQILEIARAVKEAGAQILRGGAFKPRTSPYSFQGLG--EEGLKLLAEAREETGLPIVTEVMDPRDVELVAEY-VDILQ 181 (335)
T ss_pred CHHHHHHHHHHHHHhchhhccCcEecCCCCCccccccc--HHHHHHHHHHHHHcCCcEEEeeCCHHHHHHHHHh-CCeEE
Confidence 7899999999999999998777765 3333222222 22223333 33455555444467788887776 67666
Q ss_pred EecCCchHHHHhhhcCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCC-CCHHHHHHHHHHHHHCCcCEEEEcC
Q 018252 220 IFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGA-IPPSKVAYVAKELHDMGCFEISLGD 298 (359)
Q Consensus 220 i~~s~S~~~~~~n~~~t~~e~l~~i~~~i~~Ak~~G~~V~~~is~~fg~~~~~r-~~~e~l~~~a~~l~~~Gad~I~L~D 298 (359)
+-.. ...| .++++++-+.|.+|. ++ . +. .+++++...++.+...|-..|.|+.
T Consensus 182 IgAr-----~~~N------------~~LL~~va~~~kPVi--Lk----~---G~~~ti~E~l~A~e~i~~~GN~~viL~e 235 (335)
T PRK08673 182 IGAR-----NMQN------------FDLLKEVGKTNKPVL--LK----R---GMSATIEEWLMAAEYILAEGNPNVILCE 235 (335)
T ss_pred ECcc-----cccC------------HHHHHHHHcCCCcEE--Ee----C---CCCCCHHHHHHHHHHHHHcCCCeEEEEE
Confidence 6322 1111 145566667788873 22 1 22 3889999999999999999888888
Q ss_pred C--CCC-CcHHHHHH--HHHHHHHhCCCceE-EE--EeCCCCCcHHHHHHHHHHcCCC--EEece
Q 018252 299 T--IGV-GTPGTVVP--MLEAVMAVVPVEKL-AV--HLHDTYGQSLPNILISLQVSPM--HAKPC 353 (359)
Q Consensus 299 T--~G~-~~P~~v~~--lv~~l~~~~p~~~L-~~--H~HNd~GLAlANalaAv~AGa~--~ID~t 353 (359)
- .-. ..|....+ .+..+++.+. .++ .. |.=...-+-..-+++|+.+||+ .|+.-
T Consensus 236 rG~~tf~~~~~~~ldl~ai~~lk~~~~-lPVi~d~sH~~G~~~~v~~~a~AAvA~GAdGliIE~H 299 (335)
T PRK08673 236 RGIRTFETATRNTLDLSAVPVIKKLTH-LPVIVDPSHATGKRDLVEPLALAAVAAGADGLIVEVH 299 (335)
T ss_pred CCCCCCCCcChhhhhHHHHHHHHHhcC-CCEEEeCCCCCccccchHHHHHHHHHhCCCEEEEEec
Confidence 3 122 22233332 2455565544 455 43 4322223345779999999999 77653
No 180
>smart00729 Elp3 Elongator protein 3, MiaB family, Radical SAM. This superfamily contains MoaA, NifB, PqqE, coproporphyrinogen III oxidase, biotin synthase and MiaB families, and includes a representative in the eukaryotic elongator subunit, Elp-3. Some members of the family are methyltransferases.
Probab=95.50 E-value=1.5 Score=38.45 Aligned_cols=142 Identities=19% Similarity=0.176 Sum_probs=87.7
Q ss_pred CCCCHHHHHHHHHHHHhCCC-----CEEEEeccCCCCCcCCCCC---HHHHHHHhhhcC----CCeEEEEeC----ChHh
Q 018252 143 NTVPTGVKVELIRRLVSSGL-----PVVEATSFVSPKWVPQLAD---ARDVMEAVRDLE----GARLPVLTP----NLKG 206 (359)
Q Consensus 143 ~~~~~~~k~~ia~~L~~aGv-----~~IEvG~fvspk~vPq~~D---~~ev~~~l~~~~----~~~l~~l~~----n~~g 206 (359)
...+.++..+.++.+.+.|. +.+-++... |.+.. ..++++.+++.. +..+...+. +.+-
T Consensus 28 ~~~~~e~i~~~~~~~~~~~~~~~~~~~i~~~gg~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tn~~~~~~~~ 102 (216)
T smart00729 28 RSRYLEALVREIELLAEKGEKEILVGTVFIGGGT-----PTLLSPEQLEELLEAIREILGLADDVEITIETRPGTLTEEL 102 (216)
T ss_pred hHHHHHHHHHHHHHHHhcccCCcceeEEEECCCC-----CCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCcccCCHHH
Confidence 44567777888888866554 334443321 11222 345566665443 334444442 3466
Q ss_pred HHHHHHcCCCEEEEecCCc--hHHHHhhhcCCHHHHHHHHHHHHHHHHhCC-CcEEEEEeeeecCCCCCCCCHHHHHHHH
Q 018252 207 FEAAIAAGAKEVAIFASAS--EAFSKSNINCSIEDSLVRYRAVAHAAKVLS-IPVRGYVSCVVGCPVEGAIPPSKVAYVA 283 (359)
Q Consensus 207 ie~a~~aGv~~V~i~~s~S--~~~~~~n~~~t~~e~l~~i~~~i~~Ak~~G-~~V~~~is~~fg~~~~~r~~~e~l~~~a 283 (359)
++...++|++.+.+.+-.. +.+...+-+.+ .+.+.+.++.++++| +.+...+. .+.+ ..+.+.+.+++
T Consensus 103 ~~~l~~~~~~~i~isl~~~~~~~~~~~~~~~~----~~~~~~~i~~~~~~g~~~v~~~~~--~g~~---~~~~~~~~~~~ 173 (216)
T smart00729 103 LEALKEAGVNRVSLGVQSGSDEVLKAINRGHT----VEDVLEAVEKLREAGPIKVSTDLI--VGLP---GETEEDFEETL 173 (216)
T ss_pred HHHHHHcCCCeEEEecccCCHHHHHHhcCCCC----HHHHHHHHHHHHHhCCcceEEeEE--ecCC---CCCHHHHHHHH
Confidence 8888889999888866532 23332222333 467778888889999 77766665 4432 24788999999
Q ss_pred HHHHHCCcCEEEEcC
Q 018252 284 KELHDMGCFEISLGD 298 (359)
Q Consensus 284 ~~l~~~Gad~I~L~D 298 (359)
+.+.+.|++.|.+-.
T Consensus 174 ~~~~~~~~~~i~~~~ 188 (216)
T smart00729 174 KLLKELGPDRVSIFP 188 (216)
T ss_pred HHHHHcCCCeEEeee
Confidence 999999999776643
No 181
>TIGR00538 hemN oxygen-independent coproporphyrinogen III oxidase. This model represents HemN, the oxygen-independent coproporphyrinogen III oxidase that replaces HemF function under anaerobic conditions. Several species, including E. coli, Helicobacter pylori, and Aquifex aeolicus, have both a member of this family and a member of another, closely related family for which there is no evidence of coproporphyrinogen III oxidase activity. Members of this family have a perfectly conserved motif PYRT[SC]YP in a region N-terminal to the region of homology with the related uncharacterized protein.
Probab=95.46 E-value=1.2 Score=46.03 Aligned_cols=148 Identities=9% Similarity=0.103 Sum_probs=91.4
Q ss_pred CCCEEEEeccCCCCCcCCCCCHHHHHHHhhhc----CCCeEEEEe-C---ChHhHHHHHHcCCCEEEEecCCchHHHHhh
Q 018252 161 GLPVVEATSFVSPKWVPQLADARDVMEAVRDL----EGARLPVLT-P---NLKGFEAAIAAGAKEVAIFASASEAFSKSN 232 (359)
Q Consensus 161 Gv~~IEvG~fvspk~vPq~~D~~ev~~~l~~~----~~~~l~~l~-~---n~~gie~a~~aGv~~V~i~~s~S~~~~~~n 232 (359)
+++.|-+|... |...+ ..+..++++.+++. .+.++..-+ | +.+.++...++|+.+|.+-+-.-..-....
T Consensus 102 ~v~~I~fgGGt-P~~l~-~~~l~~ll~~i~~~~~~~~~~eitie~np~~l~~e~l~~lk~~G~~risiGvqS~~~~~l~~ 179 (455)
T TIGR00538 102 HVSQLHWGGGT-PTYLS-PEQISRLMKLIRENFPFNADAEISIEIDPRYITKDVIDALRDEGFNRLSFGVQDFNKEVQQA 179 (455)
T ss_pred ceEEEEECCCC-cCCCC-HHHHHHHHHHHHHhCCCCCCCeEEEEeccCcCCHHHHHHHHHcCCCEEEEcCCCCCHHHHHH
Confidence 67777776422 11100 12344555555542 345555544 3 336688888899999998653332222234
Q ss_pred hcCCHHHHHHHHHHHHHHHHhCCCc-EEEEEeeeecCCCCCCCCHHHHHHHHHHHHHCCcCEEEEcCC------------
Q 018252 233 INCSIEDSLVRYRAVAHAAKVLSIP-VRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDT------------ 299 (359)
Q Consensus 233 ~~~t~~e~l~~i~~~i~~Ak~~G~~-V~~~is~~fg~~~~~r~~~e~l~~~a~~l~~~Gad~I~L~DT------------ 299 (359)
+|+. ...+.+.++++.+++.|++ +...++ +|.|. -+.+.+.+.++.+.+.|++.|.+-.-
T Consensus 180 l~r~--~~~~~~~~ai~~l~~~G~~~v~~dli--~GlPg---qt~e~~~~tl~~~~~l~~~~is~y~L~~~p~~~~~~~~ 252 (455)
T TIGR00538 180 VNRI--QPEEMIFELMNHAREAGFTSINIDLI--YGLPK---QTKESFAKTLEKVAELNPDRLAVFNYAHVPWVKPAQRK 252 (455)
T ss_pred hCCC--CCHHHHHHHHHHHHhcCCCcEEEeEE--eeCCC---CCHHHHHHHHHHHHhcCCCEEEEecCccccchhHHHhc
Confidence 5542 2245677888999999996 656665 77764 37888889999999999998766432
Q ss_pred ---CCCCcHHHHHHHHHHHHH
Q 018252 300 ---IGVGTPGTVVPMLEAVMA 317 (359)
Q Consensus 300 ---~G~~~P~~v~~lv~~l~~ 317 (359)
.....+++..+++..+.+
T Consensus 253 ~~~~~~~~~e~~~~~~~~~~~ 273 (455)
T TIGR00538 253 IPEAALPSAEEKLDILQETIA 273 (455)
T ss_pred ccccCCCCHHHHHHHHHHHHH
Confidence 112346777777666654
No 182
>PRK08745 ribulose-phosphate 3-epimerase; Provisional
Probab=95.40 E-value=0.59 Score=44.00 Aligned_cols=169 Identities=17% Similarity=0.111 Sum_probs=101.7
Q ss_pred HHHHHHHHHHHhCCCCEEEE----eccCCCCCcCCCCCHHHHHHHhhhc-CCCeE--EEEeCCh-HhHHHHHHcCCCEEE
Q 018252 148 GVKVELIRRLVSSGLPVVEA----TSFVSPKWVPQLADARDVMEAVRDL-EGARL--PVLTPNL-KGFEAAIAAGAKEVA 219 (359)
Q Consensus 148 ~~k~~ia~~L~~aGv~~IEv----G~fvspk~vPq~~D~~ev~~~l~~~-~~~~l--~~l~~n~-~gie~a~~aGv~~V~ 219 (359)
..-.+-++.|.+.|++.+-+ |.|+ |.++--.++.+.+++. .+..+ --++.+. +-++..+++|++.|.
T Consensus 16 ~~l~~~i~~l~~~g~d~lHiDimDG~FV-----PN~tfg~~~i~~lr~~~~~~~~dvHLMv~~P~~~i~~~~~~gad~I~ 90 (223)
T PRK08745 16 ARLGEEVDNVLKAGADWVHFDVMDNHYV-----PNLTIGPMVCQALRKHGITAPIDVHLMVEPVDRIVPDFADAGATTIS 90 (223)
T ss_pred HHHHHHHHHHHHcCCCEEEEecccCccC-----CCcccCHHHHHHHHhhCCCCCEEEEeccCCHHHHHHHHHHhCCCEEE
Confidence 34456677888899999766 6665 3444334456666654 44433 3344555 568888899999888
Q ss_pred EecCCchHHHHhhhcCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHHCCcCEEEE---
Q 018252 220 IFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISL--- 296 (359)
Q Consensus 220 i~~s~S~~~~~~n~~~t~~e~l~~i~~~i~~Ak~~G~~V~~~is~~fg~~~~~r~~~e~l~~~a~~l~~~Gad~I~L--- 296 (359)
+..-++ ....++++++|++|+++...|. | .++.+.+.++... +|.|-+
T Consensus 91 ~H~Ea~----------------~~~~~~l~~Ir~~g~k~Glaln-----P---~T~~~~i~~~l~~-----vD~VlvMtV 141 (223)
T PRK08745 91 FHPEAS----------------RHVHRTIQLIKSHGCQAGLVLN-----P---ATPVDILDWVLPE-----LDLVLVMSV 141 (223)
T ss_pred EcccCc----------------ccHHHHHHHHHHCCCceeEEeC-----C---CCCHHHHHHHHhh-----cCEEEEEEE
Confidence 754322 1234677888999998765543 2 3577776666552 332221
Q ss_pred -cCCCCCCcHHHHHHHHHHHHHhCCCceEEEEeCCCCCcHHHHHHHHHHcCCCEE
Q 018252 297 -GDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQVSPMHA 350 (359)
Q Consensus 297 -~DT~G~~~P~~v~~lv~~l~~~~p~~~L~~H~HNd~GLAlANalaAv~AGa~~I 350 (359)
+.-.|-.--..+.+-++.+++..+...+.+..==|=|....|+-...++||+.+
T Consensus 142 ~PGf~GQ~fi~~~l~KI~~l~~~~~~~~~~~~IeVDGGI~~eti~~l~~aGaDi~ 196 (223)
T PRK08745 142 NPGFGGQAFIPSALDKLRAIRKKIDALGKPIRLEIDGGVKADNIGAIAAAGADTF 196 (223)
T ss_pred CCCCCCccccHHHHHHHHHHHHHHHhcCCCeeEEEECCCCHHHHHHHHHcCCCEE
Confidence 222333333344445555555433211223333367888999999999999976
No 183
>PRK13347 coproporphyrinogen III oxidase; Provisional
Probab=95.36 E-value=0.86 Score=47.06 Aligned_cols=111 Identities=14% Similarity=0.078 Sum_probs=75.2
Q ss_pred CHHHHHHHhhhc----CCCeEEEEe-C---ChHhHHHHHHcCCCEEEEecCCchHHHHhhhcCCHHHHHHHHHHHHHHHH
Q 018252 181 DARDVMEAVRDL----EGARLPVLT-P---NLKGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAK 252 (359)
Q Consensus 181 D~~ev~~~l~~~----~~~~l~~l~-~---n~~gie~a~~aGv~~V~i~~s~S~~~~~~n~~~t~~e~l~~i~~~i~~Ak 252 (359)
+..++++.+++. ++.++..-+ | +.+.++...++|+.+|.+-+..-.......+|+. ...+.+.++++.++
T Consensus 121 ~l~~ll~~i~~~~~~~~~~e~tie~~p~~lt~e~l~~L~~~G~~rvsiGvQS~~~~vl~~l~R~--~~~~~~~~ai~~lr 198 (453)
T PRK13347 121 QFERLMAALRDAFDFAPEAEIAVEIDPRTVTAEMLQALAALGFNRASFGVQDFDPQVQKAINRI--QPEEMVARAVELLR 198 (453)
T ss_pred HHHHHHHHHHHhCCCCCCceEEEEeccccCCHHHHHHHHHcCCCEEEECCCCCCHHHHHHhCCC--CCHHHHHHHHHHHH
Confidence 344555555542 445665544 3 3366788888999999987643333333445543 23456678888999
Q ss_pred hCCCc-EEEEEeeeecCCCCCCCCHHHHHHHHHHHHHCCcCEEEEcC
Q 018252 253 VLSIP-VRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGD 298 (359)
Q Consensus 253 ~~G~~-V~~~is~~fg~~~~~r~~~e~l~~~a~~l~~~Gad~I~L~D 298 (359)
++|++ |.+.++ +|.|. -+.+.+.+.++.+.++|++.|.+-.
T Consensus 199 ~~G~~~v~~dli--~GlPg---qt~e~~~~tl~~~~~l~p~~i~~y~ 240 (453)
T PRK13347 199 AAGFESINFDLI--YGLPH---QTVESFRETLDKVIALSPDRIAVFG 240 (453)
T ss_pred hcCCCcEEEeEE--EeCCC---CCHHHHHHHHHHHHhcCCCEEEEec
Confidence 99986 666665 78764 3788899999999999999887754
No 184
>TIGR02146 LysS_fung_arch homocitrate synthase. This model includes the yeast LYS21 gene which carries out the first step of the alpha-aminoadipate (AAA) lysine biosynthesis pathway. A related pathway is found in Thermus thermophilus. This enzyme is closely related to 2-isopropylmalate synthase (LeuA) and citramalate synthase (CimA), both of which are present in the euryarchaeota. Some archaea have a separate homocitrate synthase (AksA) which also synthesizes longer homocitrate analogs.
Probab=95.32 E-value=8.3e-08 Score=94.19 Aligned_cols=77 Identities=10% Similarity=-0.008 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHCCcC-EEEEcCCCCCCcHHHHHHHHHHHHHhC--------------C-CceEEEEeCCCCCcHHHHHHH
Q 018252 278 KVAYVAKELHDMGCF-EISLGDTIGVGTPGTVVPMLEAVMAVV--------------P-VEKLAVHLHDTYGQSLPNILI 341 (359)
Q Consensus 278 ~l~~~a~~l~~~Gad-~I~L~DT~G~~~P~~v~~lv~~l~~~~--------------p-~~~L~~H~HNd~GLAlANala 341 (359)
.+...++.+.+.|.+ .+.+.|+. ...|..+.+++..+...- | .+...+|+||+.|++++|++.
T Consensus 111 ~v~~~~e~a~~~g~~~~~~~~~~~-~~~~~~~~~~~d~~~~~g~~~i~~~dt~g~~~p~~v~~~v~~~~d~~~~~~~~~H 189 (344)
T TIGR02146 111 SARETIEYAKSAGLEVRFSAEDTF-RSELADLLSIYETVGVFGVDRVGIADTVGKAAPRQVYELIRTVVRVVPGVDIELH 189 (344)
T ss_pred HHHHHHHHHHHCCCeEEEEEeeCC-CCCHHHHHHHHHHHHHCCCCEEEEcCCCCcCCHHHHHHHHHHHHHhCCCCeEEEE
Confidence 455566666677865 67888875 556788888887776421 2 245778999999999999999
Q ss_pred HHHcCCCEEeceee
Q 018252 342 SLQVSPMHAKPCFT 355 (359)
Q Consensus 342 Av~AGa~~ID~tl~ 355 (359)
+...|+..+..|++
T Consensus 190 ~Hn~~g~avant~~ 203 (344)
T TIGR02146 190 AHNDTGCAVANAYN 203 (344)
T ss_pred ecCCCCHHHHHHHH
Confidence 99999988887764
No 185
>PRK08227 autoinducer 2 aldolase; Validated
Probab=95.29 E-value=0.93 Score=43.86 Aligned_cols=123 Identities=18% Similarity=0.136 Sum_probs=81.0
Q ss_pred hHHHHHHcCCCEEEE--ecCCchHHHHhhhcCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHH
Q 018252 206 GFEAAIAAGAKEVAI--FASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVA 283 (359)
Q Consensus 206 gie~a~~aGv~~V~i--~~s~S~~~~~~n~~~t~~e~l~~i~~~i~~Ak~~G~~V~~~is~~fg~~~~~r~~~e~l~~~a 283 (359)
.+|.|++.|.+-|.+ +.. |+. ..+.++.+.++++.|++.|+++.+ +. .-|... ..+++.+...+
T Consensus 99 sVeeAvrlGAdAV~~~v~~G-s~~---------E~~~l~~l~~v~~ea~~~G~Plla-~~-prG~~~--~~~~~~ia~aa 164 (264)
T PRK08227 99 DMEDAVRLNACAVAAQVFIG-SEY---------EHQSIKNIIQLVDAGLRYGMPVMA-VT-AVGKDM--VRDARYFSLAT 164 (264)
T ss_pred cHHHHHHCCCCEEEEEEecC-CHH---------HHHHHHHHHHHHHHHHHhCCcEEE-Ee-cCCCCc--CchHHHHHHHH
Confidence 589999999997655 333 221 246788999999999999999865 22 222111 13667888889
Q ss_pred HHHHHCCcCEEEEcCCCCCCcHHHHHHHHHHHHHhCCCceEEEEe--CCCCCcHHHHHHHHHHcCCCEEec
Q 018252 284 KELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHL--HDTYGQSLPNILISLQVSPMHAKP 352 (359)
Q Consensus 284 ~~l~~~Gad~I~L~DT~G~~~P~~v~~lv~~l~~~~p~~~L~~H~--HNd~GLAlANalaAv~AGa~~ID~ 352 (359)
+...++|||.|-..=| . +-++.+.+.-| +|+-+=+ .-+.--.+.-+..|+++||.-|..
T Consensus 165 RiaaELGADiVK~~y~------~---~~f~~vv~a~~-vPVviaGG~k~~~~~~L~~v~~ai~aGa~Gv~~ 225 (264)
T PRK08227 165 RIAAEMGAQIIKTYYV------E---EGFERITAGCP-VPIVIAGGKKLPERDALEMCYQAIDEGASGVDM 225 (264)
T ss_pred HHHHHHcCCEEecCCC------H---HHHHHHHHcCC-CcEEEeCCCCCCHHHHHHHHHHHHHcCCceeee
Confidence 9999999999886543 1 33444444444 3443421 112223688888999999987753
No 186
>PRK14057 epimerase; Provisional
Probab=95.27 E-value=0.81 Score=44.03 Aligned_cols=169 Identities=11% Similarity=0.104 Sum_probs=100.9
Q ss_pred HHHHHHHHHHHHhCCCCEEEE----eccCCCCCcCCCCCHHHHHHHhhhcCCCeEEEEeCCh-HhHHHHHHcCCCEEEEe
Q 018252 147 TGVKVELIRRLVSSGLPVVEA----TSFVSPKWVPQLADARDVMEAVRDLEGARLPVLTPNL-KGFEAAIAAGAKEVAIF 221 (359)
Q Consensus 147 ~~~k~~ia~~L~~aGv~~IEv----G~fvspk~vPq~~D~~ev~~~l~~~~~~~l~~l~~n~-~gie~a~~aGv~~V~i~ 221 (359)
...-.+-++.|.++|++.+-+ |.|| |.+.--.++.+.++......+--++.+. +-++.-+++|++.|.+.
T Consensus 31 ~~~L~~el~~l~~~g~d~lHiDVMDG~FV-----PNitfGp~~i~~i~~~~p~DvHLMV~~P~~~i~~~~~aGad~It~H 105 (254)
T PRK14057 31 WIALHRYLQQLEALNQPLLHLDLMDGQFC-----PQFTVGPWAVGQLPQTFIKDVHLMVADQWTAAQACVKAGAHCITLQ 105 (254)
T ss_pred HHHHHHHHHHHHHCCCCEEEEeccCCccC-----CccccCHHHHHHhccCCCeeEEeeeCCHHHHHHHHHHhCCCEEEEe
Confidence 345567788889999999866 5555 4444333445555542223344455555 56888899999988876
Q ss_pred cCCchHHHHhhhcCCHHHHHHHHHHHHHHHHhCCCc-------EEEEEeeeecCCCCCCCCHHHHHHHHHHHHHCCcCEE
Q 018252 222 ASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIP-------VRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEI 294 (359)
Q Consensus 222 ~s~S~~~~~~n~~~t~~e~l~~i~~~i~~Ak~~G~~-------V~~~is~~fg~~~~~r~~~e~l~~~a~~l~~~Gad~I 294 (359)
.-+.+ .+.++++++|++|.+ +.+.|. + +| .++++.+.++... +|.|
T Consensus 106 ~Ea~~----------------~~~~~l~~Ir~~G~k~~~~~~~~kaGlA--l-nP---~Tp~e~i~~~l~~-----vD~V 158 (254)
T PRK14057 106 AEGDI----------------HLHHTLSWLGQQTVPVIGGEMPVIRGIS--L-CP---ATPLDVIIPILSD-----VEVI 158 (254)
T ss_pred ecccc----------------CHHHHHHHHHHcCCCcccccccceeEEE--E-CC---CCCHHHHHHHHHh-----CCEE
Confidence 54321 234667788888874 223332 2 22 3677777766653 4432
Q ss_pred EE----cCCCCCCcHHHHHHHHHHHHHhCC----CceEEEEeCCCCCcHHHHHHHHHHcCCCEEe
Q 018252 295 SL----GDTIGVGTPGTVVPMLEAVMAVVP----VEKLAVHLHDTYGQSLPNILISLQVSPMHAK 351 (359)
Q Consensus 295 ~L----~DT~G~~~P~~v~~lv~~l~~~~p----~~~L~~H~HNd~GLAlANalaAv~AGa~~ID 351 (359)
-+ +.-.|-.--..+.+-++.+++..+ +..|++ |=|....|+-...++||+++=
T Consensus 159 LvMtV~PGfgGQ~Fi~~~l~KI~~lr~~~~~~~~~~~IeV----DGGI~~~ti~~l~~aGad~~V 219 (254)
T PRK14057 159 QLLAVNPGYGSKMRSSDLHERVAQLLCLLGDKREGKIIVI----DGSLTQDQLPSLIAQGIDRVV 219 (254)
T ss_pred EEEEECCCCCchhccHHHHHHHHHHHHHHHhcCCCceEEE----ECCCCHHHHHHHHHCCCCEEE
Confidence 22 223343333444445555555433 234444 678889999999999999763
No 187
>cd01335 Radical_SAM Radical SAM superfamily. Enzymes of this family generate radicals by combining a 4Fe-4S cluster and S-adenosylmethionine (SAM) in close proximity. They are characterized by a conserved CxxxCxxC motif, which coordinates the conserved iron-sulfur cluster. Mechanistically, they share the transfer of a single electron from the iron-sulfur cluster to SAM, which leads to its reductive cleavage to methionine and a 5'-deoxyadenosyl radical, which, in turn, abstracts a hydrogen from the appropriately positioned carbon atom. Depending on the enzyme, SAM is consumed during this process or it is restored and reused. Radical SAM enzymes catalyze steps in metabolism, DNA repair, the biosynthesis of vitamins and coenzymes, and the biosynthesis of many antibiotics. Examples are biotin synthase (BioB), lipoyl synthase (LipA), pyruvate formate-lyase (PFL), coproporphyrinogen oxidase (HemN), lysine 2,3-aminomutase (LAM), anaerobic ribonucleotide reductase (ARR), and MoaA, an enzyme o
Probab=95.25 E-value=1.3 Score=38.09 Aligned_cols=135 Identities=12% Similarity=0.091 Sum_probs=83.0
Q ss_pred HHHHHHHHHHHhCCCCEEEEeccCCCCCcCCCCCHHHHHHHhhhc-CCCeEEEEeC----ChHhHHHHHHcCCCEEEEec
Q 018252 148 GVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDL-EGARLPVLTP----NLKGFEAAIAAGAKEVAIFA 222 (359)
Q Consensus 148 ~~k~~ia~~L~~aGv~~IEvG~fvspk~vPq~~D~~ev~~~l~~~-~~~~l~~l~~----n~~gie~a~~aGv~~V~i~~ 222 (359)
+...+++......|+..+-++.. .|-..| ...++++.+... ++..+...+. +.+.++...++|+..+.+.+
T Consensus 31 ~~~~~~~~~~~~~~~~~i~~~gg-ep~~~~---~~~~~i~~~~~~~~~~~~~i~T~~~~~~~~~~~~l~~~g~~~i~i~l 106 (204)
T cd01335 31 EEILDIVLEAKERGVEVVILTGG-EPLLYP---ELAELLRRLKKELPGFEISIETNGTLLTEELLKELKELGLDGVGVSL 106 (204)
T ss_pred HHHHHHHHHHHhcCceEEEEeCC-cCCccH---hHHHHHHHHHhhCCCceEEEEcCcccCCHHHHHHHHhCCCceEEEEc
Confidence 57778888888888888877642 221111 333444444443 5666666663 35678888899999999887
Q ss_pred CCchHHHHhhhcCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHHCC-cC
Q 018252 223 SASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMG-CF 292 (359)
Q Consensus 223 s~S~~~~~~n~~~t~~e~l~~i~~~i~~Ak~~G~~V~~~is~~fg~~~~~r~~~e~l~~~a~~l~~~G-ad 292 (359)
...+......++. ....++++.+.++.+++.|+.+...+. .+.+.. +.+.+.+..+.+.+.+ ++
T Consensus 107 e~~~~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~i--~g~~~~---~~~~~~~~~~~l~~~~~~~ 171 (204)
T cd01335 107 DSGDEEVADKIRG-SGESFKERLEALKELREAGLGLSTTLL--VGLGDE---DEEDDLEELELLAEFRSPD 171 (204)
T ss_pred ccCCHHHHHHHhc-CCcCHHHHHHHHHHHHHcCCCceEEEE--EecCCC---hhHHHHHHHHHHHhhcCcc
Confidence 6554443333320 112345556677777788888877665 444332 3566777777777765 54
No 188
>PRK09249 coproporphyrinogen III oxidase; Provisional
Probab=95.23 E-value=2 Score=44.30 Aligned_cols=126 Identities=14% Similarity=0.177 Sum_probs=79.2
Q ss_pred CCCCEEEEeccCCCCCcCCCC---CHHHHHHHhhhc----CCCeEEEEe-C---ChHhHHHHHHcCCCEEEEec-CCchH
Q 018252 160 SGLPVVEATSFVSPKWVPQLA---DARDVMEAVRDL----EGARLPVLT-P---NLKGFEAAIAAGAKEVAIFA-SASEA 227 (359)
Q Consensus 160 aGv~~IEvG~fvspk~vPq~~---D~~ev~~~l~~~----~~~~l~~l~-~---n~~gie~a~~aGv~~V~i~~-s~S~~ 227 (359)
.+++.|-+|... |.+- +.+++++.+++. ++.++..-+ | +.+-++...++|+.+|.+-+ +.++-
T Consensus 101 ~~v~~i~~gGGt-----Ps~l~~~~l~~ll~~l~~~~~~~~~~e~tie~np~~lt~e~l~~l~~aG~~risiGvqS~~~~ 175 (453)
T PRK09249 101 RPVSQLHWGGGT-----PTFLSPEQLRRLMALLREHFNFAPDAEISIEIDPRELDLEMLDALRELGFNRLSLGVQDFDPE 175 (453)
T ss_pred CceEEEEECCcc-----cccCCHHHHHHHHHHHHHhCCCCCCCEEEEEecCCcCCHHHHHHHHHcCCCEEEECCCCCCHH
Confidence 346666665422 2222 334444444432 345665544 3 23567788889999999866 33332
Q ss_pred HHHhhhcCCHHHHHHHHHHHHHHHHhCCC-cEEEEEeeeecCCCCCCCCHHHHHHHHHHHHHCCcCEEEEcC
Q 018252 228 FSKSNINCSIEDSLVRYRAVAHAAKVLSI-PVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGD 298 (359)
Q Consensus 228 ~~~~n~~~t~~e~l~~i~~~i~~Ak~~G~-~V~~~is~~fg~~~~~r~~~e~l~~~a~~l~~~Gad~I~L~D 298 (359)
....+|+. ...+.+.++++.+++.|+ .+.+.++ +|.|. -+.+.+.+.++.+.+.|++.|.+-.
T Consensus 176 -~L~~l~r~--~~~~~~~~ai~~l~~~G~~~v~~dli--~GlPg---qt~e~~~~~l~~~~~l~~~~i~~y~ 239 (453)
T PRK09249 176 -VQKAVNRI--QPFEFTFALVEAARELGFTSINIDLI--YGLPK---QTPESFARTLEKVLELRPDRLAVFN 239 (453)
T ss_pred -HHHHhCCC--CCHHHHHHHHHHHHHcCCCcEEEEEE--ccCCC---CCHHHHHHHHHHHHhcCCCEEEEcc
Confidence 23344542 234556678888899998 5766665 77664 4778888899999999999887764
No 189
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=95.21 E-value=0.45 Score=46.17 Aligned_cols=103 Identities=16% Similarity=0.099 Sum_probs=68.8
Q ss_pred HHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHHCC-cCEEEE---c--CCC-CC---CcHH
Q 018252 237 IEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMG-CFEISL---G--DTI-GV---GTPG 306 (359)
Q Consensus 237 ~~e~l~~i~~~i~~Ak~~G~~V~~~is~~fg~~~~~r~~~e~l~~~a~~l~~~G-ad~I~L---~--DT~-G~---~~P~ 306 (359)
.+..++.+.+. .++.+..+.+.|. -.+++.+.+.++.+.++| +|.|.| | -.. |. ..|+
T Consensus 76 ~~~~~~~~~~~---~~~~~~p~i~si~---------g~~~~~~~~~a~~~~~aG~~D~iElN~~cP~~~~gg~~~~~~~~ 143 (301)
T PRK07259 76 VDAFIEEELPW---LEEFDTPIIANVA---------GSTEEEYAEVAEKLSKAPNVDAIELNISCPNVKHGGMAFGTDPE 143 (301)
T ss_pred HHHHHHHHHHH---HhccCCcEEEEec---------cCCHHHHHHHHHHHhccCCcCEEEEECCCCCCCCCccccccCHH
Confidence 34445544443 2334566655553 236899999999999999 998766 1 111 22 3589
Q ss_pred HHHHHHHHHHHhCCCceEEEEeCCCCCcHHHHHHHHHHcCCCEEec
Q 018252 307 TVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQVSPMHAKP 352 (359)
Q Consensus 307 ~v~~lv~~l~~~~p~~~L~~H~HNd~GLAlANalaAv~AGa~~ID~ 352 (359)
.+.++++++++.+ +.+|.+..--+.--...-+..+.++|++.|+.
T Consensus 144 ~~~eiv~~vr~~~-~~pv~vKl~~~~~~~~~~a~~l~~~G~d~i~~ 188 (301)
T PRK07259 144 LAYEVVKAVKEVV-KVPVIVKLTPNVTDIVEIAKAAEEAGADGLSL 188 (301)
T ss_pred HHHHHHHHHHHhc-CCCEEEEcCCCchhHHHHHHHHHHcCCCEEEE
Confidence 9999999999987 46788776544433445556778899998865
No 190
>PRK08446 coproporphyrinogen III oxidase; Provisional
Probab=95.14 E-value=1.1 Score=44.76 Aligned_cols=126 Identities=11% Similarity=0.019 Sum_probs=77.7
Q ss_pred CCCEEEEeccCCCCCcCCCCCHHHHHHHhhhc--CCCeEEEEe-CC---hHhHHHHHHcCCCEEEEecC-CchHHHHhhh
Q 018252 161 GLPVVEATSFVSPKWVPQLADARDVMEAVRDL--EGARLPVLT-PN---LKGFEAAIAAGAKEVAIFAS-ASEAFSKSNI 233 (359)
Q Consensus 161 Gv~~IEvG~fvspk~vPq~~D~~ev~~~l~~~--~~~~l~~l~-~n---~~gie~a~~aGv~~V~i~~s-~S~~~~~~n~ 233 (359)
+++.|-+|... |...|. ...+++++.++.. .+.++..-+ |+ .+.++...++|+.+|.+-+. .++ .....+
T Consensus 51 ~v~~iyfGGGT-Ps~l~~-~~l~~ll~~i~~~~~~~~eitiE~nP~~~~~e~l~~l~~~GvnRiSiGvQS~~~-~~L~~l 127 (350)
T PRK08446 51 KIESVFIGGGT-PSTVSA-KFYEPIFEIISPYLSKDCEITTEANPNSATKAWLKGMKNLGVNRISFGVQSFNE-DKLKFL 127 (350)
T ss_pred ceeEEEECCCc-cccCCH-HHHHHHHHHHHHhcCCCceEEEEeCCCCCCHHHHHHHHHcCCCEEEEecccCCH-HHHHHc
Confidence 56667666421 111110 1234445555432 345665544 32 35677888899999998663 333 333345
Q ss_pred cCCHHHHHHHHHHHHHHHHhCCCc-EEEEEeeeecCCCCCCCCHHHHHHHHHHHHHCCcCEEEE
Q 018252 234 NCSIEDSLVRYRAVAHAAKVLSIP-VRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISL 296 (359)
Q Consensus 234 ~~t~~e~l~~i~~~i~~Ak~~G~~-V~~~is~~fg~~~~~r~~~e~l~~~a~~l~~~Gad~I~L 296 (359)
|+. ...+.+.++++.+++.|+. |.+.++ ||.|. -+.+.+.+..+.+.+.|++.|++
T Consensus 128 gR~--~~~~~~~~ai~~lr~~g~~~v~iDli--~GlPg---qt~~~~~~~l~~~~~l~~~~is~ 184 (350)
T PRK08446 128 GRI--HSQKQIIKAIENAKKAGFENISIDLI--YDTPL---DNKKLLKEELKLAKELPINHLSA 184 (350)
T ss_pred CCC--CCHHHHHHHHHHHHHcCCCEEEEEee--cCCCC---CCHHHHHHHHHHHHhcCCCEEEe
Confidence 642 2245567788899999986 556665 77764 36778888889999999998765
No 191
>PLN03033 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional
Probab=95.12 E-value=2.5 Score=41.32 Aligned_cols=176 Identities=15% Similarity=0.043 Sum_probs=109.5
Q ss_pred CHHHHHHHHHHHHhC----CCCEEEEeccC-----CCCCcCCCC--CHHHHHHHhhhcCCCeEEEEeCChHhHHHHHHcC
Q 018252 146 PTGVKVELIRRLVSS----GLPVVEATSFV-----SPKWVPQLA--DARDVMEAVRDLEGARLPVLTPNLKGFEAAIAAG 214 (359)
Q Consensus 146 ~~~~k~~ia~~L~~a----Gv~~IEvG~fv-----spk~vPq~~--D~~ev~~~l~~~~~~~l~~l~~n~~gie~a~~aG 214 (359)
+.++.+++++.|.++ |+..|==|+|- +|..+..+. +--++++.+++.-+..+..=+-+.++++.+.+.
T Consensus 28 s~e~~~~~A~~lk~~~~~~g~~~i~kgsfkKApRTSp~sFrG~G~eeGL~iL~~vk~~~glpvvTeV~~~~q~~~vae~- 106 (290)
T PLN03033 28 SEEHILRMAKHIKDISTKLGLPLVFKSSFDKANRTSSKSFRGPGMAEGLKILEKVKVAYDLPIVTDVHESSQCEAVGKV- 106 (290)
T ss_pred CHHHHHHHHHHHHHHHHhCCCcEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCceEEeeCCHHHHHHHHhh-
Confidence 578899999999985 99999888763 444433333 333455555555566655555577888888776
Q ss_pred CCEEEEecCCchHHHHhhhcCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHHCCcCEE
Q 018252 215 AKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEI 294 (359)
Q Consensus 215 v~~V~i~~s~S~~~~~~n~~~t~~e~l~~i~~~i~~Ak~~G~~V~~~is~~fg~~~~~r~~~e~l~~~a~~l~~~Gad~I 294 (359)
+|.+.+-+ |+..| -++++.+.+.|..|-. = .+--.+|++....++.+.+.|-+.|
T Consensus 107 ~DilQIgA-----r~~rq------------tdLL~a~~~tgkpV~l--K------kGq~~t~~e~~~aaeki~~~GN~~v 161 (290)
T PLN03033 107 ADIIQIPA-----FLCRQ------------TDLLVAAAKTGKIINI--K------KGQFCAPSVMRNSAEKVRLAGNPNV 161 (290)
T ss_pred CcEEeeCc-----HHHHH------------HHHHHHHHccCCeEEe--C------CCCCCCHHHHHHHHHHHHHcCCCcE
Confidence 58887743 32222 2555566566766521 1 1112589999999999999999999
Q ss_pred EEcC---CCCCCcH-HHHHHHHHHHHHhCCCceEEE---Ee----------------CCCCCcHHHHHHHHHHcCCCEE
Q 018252 295 SLGD---TIGVGTP-GTVVPMLEAVMAVVPVEKLAV---HL----------------HDTYGQSLPNILISLQVSPMHA 350 (359)
Q Consensus 295 ~L~D---T~G~~~P-~~v~~lv~~l~~~~p~~~L~~---H~----------------HNd~GLAlANalaAv~AGa~~I 350 (359)
.||. |+|+..- .++.. +..+++ .+.|+-+ |. =-++-+-.+-+.||+.+|||-+
T Consensus 162 iLcERG~tFgy~~lv~D~r~-ip~mk~--~~lPVI~DpSHsvQ~pg~~~~~~~g~~s~G~Re~V~~larAAvA~GaDGl 237 (290)
T PLN03033 162 MVCERGTMFGYNDLIVDPRN-LEWMRE--ANCPVVADITHSLQQPAGKKLDGGGVASGGLRELIPCIARTAVAVGVDGI 237 (290)
T ss_pred EEEeCCCCcCCCCcccchhh-hHHHHh--cCCCEEEeCCccccCCCcccccccCCCCCCCHHHHHHHHHHHHHhCCCEE
Confidence 9887 3433311 12222 223333 2344555 53 1233345678999999999865
No 192
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=95.11 E-value=0.99 Score=47.16 Aligned_cols=156 Identities=12% Similarity=0.044 Sum_probs=95.9
Q ss_pred CCHHHHHHHHHHHH-hCCCCEEEEec--c-CCCCCcCCCCCHHHHHHHhhhc--CCCeEEEEeC------ChHhHHHHHH
Q 018252 145 VPTGVKVELIRRLV-SSGLPVVEATS--F-VSPKWVPQLADARDVMEAVRDL--EGARLPVLTP------NLKGFEAAIA 212 (359)
Q Consensus 145 ~~~~~k~~ia~~L~-~aGv~~IEvG~--f-vspk~vPq~~D~~ev~~~l~~~--~~~~l~~l~~------n~~gie~a~~ 212 (359)
-+++..++-++.|. +.|+..+.+.- | .++ ....++.+.+.+. .+....+-++ +.+-++...+
T Consensus 222 rs~e~Vv~Ei~~l~~~~gv~~~~~~Dd~f~~~~------~~~~~l~~~l~~~~~l~i~w~~~~r~~~i~~d~ell~~l~~ 295 (497)
T TIGR02026 222 RDPKKFVDEIEWLVRTHGVGFFILADEEPTINR------KKFQEFCEEIIARNPISVTWGINTRVTDIVRDADILHLYRR 295 (497)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEEecccccCH------HHHHHHHHHHHhcCCCCeEEEEecccccccCCHHHHHHHHH
Confidence 45666666666664 57998876542 1 111 1223444444322 2344444443 2234667778
Q ss_pred cCCCEEEEec-CCchHHHHhhhcCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHHCCc
Q 018252 213 AGAKEVAIFA-SASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGC 291 (359)
Q Consensus 213 aGv~~V~i~~-s~S~~~~~~n~~~t~~e~l~~i~~~i~~Ak~~G~~V~~~is~~fg~~~~~r~~~e~l~~~a~~l~~~Ga 291 (359)
+|+..|.+-+ +.++.- ...+|+.. ..+.+.++++.++++|+.+.++++ +|.|.+ +.+.+.+.++.+.+.++
T Consensus 296 aG~~~v~iGiES~~~~~-L~~~~K~~--t~~~~~~ai~~l~~~Gi~~~~~~I--~G~P~e---t~e~~~~t~~~~~~l~~ 367 (497)
T TIGR02026 296 AGLVHISLGTEAAAQAT-LDHFRKGT--TTSTNKEAIRLLRQHNILSEAQFI--TGFENE---TDETFEETYRQLLDWDP 367 (497)
T ss_pred hCCcEEEEccccCCHHH-HHHhcCCC--CHHHHHHHHHHHHHCCCcEEEEEE--EECCCC---CHHHHHHHHHHHHHcCC
Confidence 9999888854 444432 23355432 244567888999999999877765 787754 67788888888889999
Q ss_pred CEEEEcCCCCCCcHHHHHHHHHHHHHh
Q 018252 292 FEISLGDTIGVGTPGTVVPMLEAVMAV 318 (359)
Q Consensus 292 d~I~L~DT~G~~~P~~v~~lv~~l~~~ 318 (359)
+.+.+ ...+|.-=.++.+.+++.
T Consensus 368 ~~~~~----~~~tP~PGT~l~~~~~~~ 390 (497)
T TIGR02026 368 DQANW----LMYTPWPFTSLFGELSDR 390 (497)
T ss_pred CceEE----EEecCCCCcHHHHHHHhh
Confidence 87765 356666555566655543
No 193
>PRK09250 fructose-bisphosphate aldolase; Provisional
Probab=95.10 E-value=1.2 Score=44.73 Aligned_cols=133 Identities=13% Similarity=0.034 Sum_probs=80.6
Q ss_pred hHHHHHHcCCCEEEE--ecCCchHHHHhhhcCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCC----CCCHHHH
Q 018252 206 GFEAAIAAGAKEVAI--FASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEG----AIPPSKV 279 (359)
Q Consensus 206 gie~a~~aGv~~V~i--~~s~S~~~~~~n~~~t~~e~l~~i~~~i~~Ak~~G~~V~~~is~~fg~~~~~----r~~~e~l 279 (359)
.+|.|++.|++-|.+ +.. |+. ..++++.+.++++.|++.|+.+.+ .+...|..... .++++.+
T Consensus 151 sVedAlrLGAdAV~~tvy~G-s~~---------E~~ml~~l~~i~~ea~~~GlPlv~-~~YpRG~~i~~~~d~~~~~d~I 219 (348)
T PRK09250 151 SVEDALRLGAVAVGATIYFG-SEE---------SRRQIEEISEAFEEAHELGLATVL-WSYLRNSAFKKDGDYHTAADLT 219 (348)
T ss_pred cHHHHHHCCCCEEEEEEecC-CHH---------HHHHHHHHHHHHHHHHHhCCCEEE-EecccCcccCCcccccccHHHH
Confidence 589999999997655 333 332 246788999999999999999754 12222221111 1248899
Q ss_pred HHHHHHHHHCCcCEEEEcCCCCCCcHH------------------HHHHHHHHHHHhC---CCceEEEEeCC--CCCcHH
Q 018252 280 AYVAKELHDMGCFEISLGDTIGVGTPG------------------TVVPMLEAVMAVV---PVEKLAVHLHD--TYGQSL 336 (359)
Q Consensus 280 ~~~a~~l~~~Gad~I~L~DT~G~~~P~------------------~v~~lv~~l~~~~---p~~~L~~H~HN--d~GLAl 336 (359)
...++.+.++|||.|-..=|.-...-. ...++++.+.+.. | +++-+=+=- +.--.+
T Consensus 220 a~AaRiaaELGADIVKv~yp~~~~~f~~v~~~~~~~~~~~~~~~~~~~~~~~~~V~ac~ag~-vpVviAGG~k~~~~e~L 298 (348)
T PRK09250 220 GQANHLAATIGADIIKQKLPTNNGGYKAINFGKTDDRVYSKLTSDHPIDLVRYQVANCYMGR-RGLINSGGASKGEDDLL 298 (348)
T ss_pred HHHHHHHHHHcCCEEEecCCCChhhHHHhhcccccccccccccccchHHHHHHHHHhhccCC-ceEEEeCCCCCCHHHHH
Confidence 999999999999987665442111111 1123344444442 3 344442211 222256
Q ss_pred HHHHHH---HHcCCCEE
Q 018252 337 PNILIS---LQVSPMHA 350 (359)
Q Consensus 337 ANalaA---v~AGa~~I 350 (359)
..+..| +++|+.-+
T Consensus 299 ~~v~~a~~~i~aGa~Gv 315 (348)
T PRK09250 299 DAVRTAVINKRAGGMGL 315 (348)
T ss_pred HHHHHHHHhhhcCCcch
Confidence 777788 99998755
No 194
>TIGR01211 ELP3 histone acetyltransferase, ELP3 family. The Saccharomyces cerevisiae member YPL086C has been characterized in vitro as an N-terminal acetyltransferase for all four core histones. It is a component of the RNA polymerase II holoenzyme, designated Elp3p for Elongator Protein 3. Members of this family are found in eukaryotes and archaea. These proteins are part of the larger set of GNAT acetyltransferases.
Probab=95.07 E-value=3.1 Score=44.05 Aligned_cols=109 Identities=11% Similarity=0.105 Sum_probs=74.2
Q ss_pred hHhHHHHHHcCCCEEEEec-CCchHHHHhhhcCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHH
Q 018252 204 LKGFEAAIAAGAKEVAIFA-SASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYV 282 (359)
Q Consensus 204 ~~gie~a~~aGv~~V~i~~-s~S~~~~~~n~~~t~~e~l~~i~~~i~~Ak~~G~~V~~~is~~fg~~~~~r~~~e~l~~~ 282 (359)
.+.++...++|+.+|.+-+ +.++-- ...+|+. ...+.+.++++.+|++|+++.+.++ +|.|.. +++...+-
T Consensus 206 ~e~L~~L~~~G~~rVslGVQS~~d~V-L~~inRg--ht~~~v~~Ai~~lr~~G~~v~~~LM--~GLPgq---t~e~~~~t 277 (522)
T TIGR01211 206 EEHIDRMLKLGATRVELGVQTIYNDI-LERTKRG--HTVRDVVEATRLLRDAGLKVVYHIM--PGLPGS---SFERDLEM 277 (522)
T ss_pred HHHHHHHHHcCCCEEEEECccCCHHH-HHHhCCC--CCHHHHHHHHHHHHHcCCeEEEEee--cCCCCC---CHHHHHHH
Confidence 3678888899999988865 333332 2234432 1234556778889999999888776 888754 56666777
Q ss_pred HHHHHH---CCcCEEEEcCCC-------------C---CCcHHHHHHHHHHHHHhCC
Q 018252 283 AKELHD---MGCFEISLGDTI-------------G---VGTPGTVVPMLEAVMAVVP 320 (359)
Q Consensus 283 a~~l~~---~Gad~I~L~DT~-------------G---~~~P~~v~~lv~~l~~~~p 320 (359)
++.+.+ .++|.|.|=-+. | ..++++..+++..+.+.+|
T Consensus 278 ~~~l~~~~~l~pD~Ikiypl~V~~gT~L~~~~~~G~y~p~t~ee~v~l~~~~~~~lp 334 (522)
T TIGR01211 278 FREIFEDPRFKPDMLKIYPTLVTRGTELYELWKRGEYKPYTTEEAVELIVEIKRMMP 334 (522)
T ss_pred HHHHHhccCCCcCEEEEecceeeCCCHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCC
Confidence 777764 889987776532 2 2355677777777778887
No 195
>PRK05660 HemN family oxidoreductase; Provisional
Probab=95.07 E-value=1.6 Score=43.97 Aligned_cols=128 Identities=12% Similarity=0.071 Sum_probs=79.7
Q ss_pred CCCCEEEEeccCCCCCcCCCCCHHHHHHHhhh----cCCCeEEEEe-C---ChHhHHHHHHcCCCEEEEecCCchHHHHh
Q 018252 160 SGLPVVEATSFVSPKWVPQLADARDVMEAVRD----LEGARLPVLT-P---NLKGFEAAIAAGAKEVAIFASASEAFSKS 231 (359)
Q Consensus 160 aGv~~IEvG~fvspk~vPq~~D~~ev~~~l~~----~~~~~l~~l~-~---n~~gie~a~~aGv~~V~i~~s~S~~~~~~ 231 (359)
.+++.|=+|... |-..+ ..+-.++++.+++ .++.++..-+ | +.+.++...++|+.+|.+-+..-+.....
T Consensus 57 ~~v~ti~~GGGt-Ps~l~-~~~l~~ll~~l~~~~~~~~~~eit~e~np~~l~~e~l~~Lk~~Gv~risiGvqS~~~~~L~ 134 (378)
T PRK05660 57 REVHSIFIGGGT-PSLFS-AEAIQRLLDGVRARLPFAPDAEITMEANPGTVEADRFVGYQRAGVNRISIGVQSFSEEKLK 134 (378)
T ss_pred CceeEEEeCCCc-cccCC-HHHHHHHHHHHHHhCCCCCCcEEEEEeCcCcCCHHHHHHHHHcCCCEEEeccCcCCHHHHH
Confidence 456666665422 21111 1233445555553 2456776655 3 23667888889999999976443333333
Q ss_pred hhcCCHHHHHHHHHHHHHHHHhCCCcE-EEEEeeeecCCCCCCCCHHHHHHHHHHHHHCCcCEEEE
Q 018252 232 NINCSIEDSLVRYRAVAHAAKVLSIPV-RGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISL 296 (359)
Q Consensus 232 n~~~t~~e~l~~i~~~i~~Ak~~G~~V-~~~is~~fg~~~~~r~~~e~l~~~a~~l~~~Gad~I~L 296 (359)
.+|+. ...+.+.++++.+++.|+.. .+.++ +|.|. -+.+.+.+-++.+.+.|++.|++
T Consensus 135 ~l~r~--~~~~~~~~ai~~~~~~G~~~v~~dli--~Glpg---qt~~~~~~~l~~~~~l~p~~is~ 193 (378)
T PRK05660 135 RLGRI--HGPDEAKRAAKLAQGLGLRSFNLDLM--HGLPD---QSLEEALDDLRQAIALNPPHLSW 193 (378)
T ss_pred HhCCC--CCHHHHHHHHHHHHHcCCCeEEEEee--cCCCC---CCHHHHHHHHHHHHhcCCCeEEe
Confidence 45542 23455667788889999963 45554 77765 47788888999999999997753
No 196
>TIGR01579 MiaB-like-C MiaB-like tRNA modifying enzyme. This clade is a member of a subfamily (TIGR00089) and spans low GC Gram positive bacteria, alpha and epsilon proteobacteria, Campylobacter, Porphyromonas, Aquifex, Thermotoga, Chlamydia, Treponema and Fusobacterium.
Probab=94.99 E-value=1.7 Score=44.11 Aligned_cols=145 Identities=14% Similarity=0.176 Sum_probs=88.6
Q ss_pred CCCCHHHHHHHHHHHHhCCCCEEEEec---cCCCCCcCCCCCHHHHHHHhhhcCCC---eEEEEeCC---hHhHHHHHHc
Q 018252 143 NTVPTGVKVELIRRLVSSGLPVVEATS---FVSPKWVPQLADARDVMEAVRDLEGA---RLPVLTPN---LKGFEAAIAA 213 (359)
Q Consensus 143 ~~~~~~~k~~ia~~L~~aGv~~IEvG~---fvspk~vPq~~D~~ev~~~l~~~~~~---~l~~l~~n---~~gie~a~~a 213 (359)
...+.++.++-++.|.+.|++.|-+.. +...+..+......++++.+.+.++. ++..+-|+ .+-++...++
T Consensus 165 r~r~~e~I~~Ei~~l~~~g~~ei~l~~~~~~~y~~d~~~~~~l~~Ll~~l~~~~~~~~ir~~~~~p~~~~~ell~~m~~~ 244 (414)
T TIGR01579 165 RSVPMEAILKQVKILVAKGYKEIVLTGVNLGSYGDDLKNGTSLAKLLEQILQIPGIKRIRLSSIDPEDIDEELLEAIASE 244 (414)
T ss_pred ccCCHHHHHHHHHHHHHCCCceEEEeeEccchhccCCCCCCcHHHHHHHHhcCCCCcEEEEeCCChhhCCHHHHHHHHhc
Confidence 457899999999999999999887642 11110000012345566666555543 32222232 2345555556
Q ss_pred C--CCEEEEec-CCchHHHHhhhcCCHHHHHHHHHHHHHHHHh--CCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHH
Q 018252 214 G--AKEVAIFA-SASEAFSKSNINCSIEDSLVRYRAVAHAAKV--LSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHD 288 (359)
Q Consensus 214 G--v~~V~i~~-s~S~~~~~~n~~~t~~e~l~~i~~~i~~Ak~--~G~~V~~~is~~fg~~~~~r~~~e~l~~~a~~l~~ 288 (359)
| ...+++-+ +.|+--.+ .+|+.. ..+.+.++++.+++ .|+.+.++++ +|.|.+ +++.+.+.++.+.+
T Consensus 245 ~~~~~~l~lglESgs~~vLk-~m~R~~--~~~~~~~~v~~l~~~~~gi~i~~~~I--vG~PgE---T~ed~~~tl~~i~~ 316 (414)
T TIGR01579 245 KRLCPHLHLSLQSGSDRVLK-RMRRKY--TRDDFLKLVNKLRSVRPDYAFGTDII--VGFPGE---SEEDFQETLRMVKE 316 (414)
T ss_pred CccCCCeEECCCcCChHHHH-hcCCCC--CHHHHHHHHHHHHHhCCCCeeeeeEE--EECCCC---CHHHHHHHHHHHHh
Confidence 5 57777755 44443333 355432 23567788888888 8898888876 787765 66677777777777
Q ss_pred CCcCEEE
Q 018252 289 MGCFEIS 295 (359)
Q Consensus 289 ~Gad~I~ 295 (359)
.+.+.+.
T Consensus 317 ~~~~~~~ 323 (414)
T TIGR01579 317 IEFSHLH 323 (414)
T ss_pred CCCCEEE
Confidence 7877554
No 197
>PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=94.94 E-value=2.9 Score=38.13 Aligned_cols=156 Identities=17% Similarity=0.219 Sum_probs=101.1
Q ss_pred CHHHHHHHHHHHHhCCCCEEEEeccCCCCCcCCCCCHHHHHHHhhhc-CCCeEE-EEeCChHhHHHHHHcCCCEEEEecC
Q 018252 146 PTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDL-EGARLP-VLTPNLKGFEAAIAAGAKEVAIFAS 223 (359)
Q Consensus 146 ~~~~k~~ia~~L~~aGv~~IEvG~fvspk~vPq~~D~~ev~~~l~~~-~~~~l~-~l~~n~~gie~a~~aGv~~V~i~~s 223 (359)
+.++-.++++.+.+.|++.||+..-. .+..++++.+++. +....- +.+-+..+++.|+++|.+-|+...-
T Consensus 22 ~~~~~~~~~~~~~~~Gv~~vqlr~k~--------~~~~e~~~~~~~~~~~~~~g~gtvl~~d~~~~A~~~gAdgv~~p~~ 93 (187)
T PRK07455 22 DLELGLQMAEAVAAGGMRLIEITWNS--------DQPAELISQLREKLPECIIGTGTILTLEDLEEAIAAGAQFCFTPHV 93 (187)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEeCCC--------CCHHHHHHHHHHhCCCcEEeEEEEEcHHHHHHHHHcCCCEEECCCC
Confidence 78899999999999999999999621 2445666766653 333332 2222448899999999998876321
Q ss_pred CchHHHHhhhcCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHHCCcCEEEEcCCCCCC
Q 018252 224 ASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGVG 303 (359)
Q Consensus 224 ~S~~~~~~n~~~t~~e~l~~i~~~i~~Ak~~G~~V~~~is~~fg~~~~~r~~~e~l~~~a~~l~~~Gad~I~L~DT~G~~ 303 (359)
. .+.++.++.+++.. ..| -.+++++. ++.++|+|.|.+==|.-..
T Consensus 94 ~--------------------~~~~~~~~~~~~~~------i~G-----~~t~~e~~----~A~~~Gadyv~~Fpt~~~~ 138 (187)
T PRK07455 94 D--------------------PELIEAAVAQDIPI------IPG-----ALTPTEIV----TAWQAGASCVKVFPVQAVG 138 (187)
T ss_pred C--------------------HHHHHHHHHcCCCE------EcC-----cCCHHHHH----HHHHCCCCEEEECcCCccc
Confidence 1 13445666777753 123 34666543 3445899998883331111
Q ss_pred cHHHHHHHHHHHHHhCCCceEEEEeCCCCCcHHHHHHHHHHcCCCEEec
Q 018252 304 TPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQVSPMHAKP 352 (359)
Q Consensus 304 ~P~~v~~lv~~l~~~~p~~~L~~H~HNd~GLAlANalaAv~AGa~~ID~ 352 (359)
. .+.++.+++.+|.+|+-.= =|....|+-.-+++|++.|=+
T Consensus 139 G----~~~l~~~~~~~~~ipvvai----GGI~~~n~~~~l~aGa~~vav 179 (187)
T PRK07455 139 G----ADYIKSLQGPLGHIPLIPT----GGVTLENAQAFIQAGAIAVGL 179 (187)
T ss_pred C----HHHHHHHHhhCCCCcEEEe----CCCCHHHHHHHHHCCCeEEEE
Confidence 1 3556677776665554442 367779999999999988744
No 198
>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]
Probab=94.87 E-value=2.4 Score=39.74 Aligned_cols=160 Identities=26% Similarity=0.328 Sum_probs=102.9
Q ss_pred CCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcCCCCCHHHHHHHhh-hcCCCeEE-EEeCChHhHHHHHHcCCCEEEEec
Q 018252 145 VPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVR-DLEGARLP-VLTPNLKGFEAAIAAGAKEVAIFA 222 (359)
Q Consensus 145 ~~~~~k~~ia~~L~~aGv~~IEvG~fvspk~vPq~~D~~ev~~~l~-~~~~~~l~-~l~~n~~gie~a~~aGv~~V~i~~ 222 (359)
.+.++-+.++++|.+.|++.||+++- +| ++.+.++.++ +.+++-+= +-+-+.++++.+.++|.+-+-
T Consensus 22 ~~~e~a~~~a~Ali~gGi~~IEITl~-sp-------~a~e~I~~l~~~~p~~lIGAGTVL~~~q~~~a~~aGa~fiV--- 90 (211)
T COG0800 22 DDVEEALPLAKALIEGGIPAIEITLR-TP-------AALEAIRALAKEFPEALIGAGTVLNPEQARQAIAAGAQFIV--- 90 (211)
T ss_pred CCHHHHHHHHHHHHHcCCCeEEEecC-CC-------CHHHHHHHHHHhCcccEEccccccCHHHHHHHHHcCCCEEE---
Confidence 57899999999999999999999973 22 4555555555 45655442 233478999999999976431
Q ss_pred CCchHHHHhhhcCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHHCCcCEEEEcCCCCC
Q 018252 223 SASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGV 302 (359)
Q Consensus 223 s~S~~~~~~n~~~t~~e~l~~i~~~i~~Ak~~G~~V~~~is~~fg~~~~~r~~~e~l~~~a~~l~~~Gad~I~L~DT~G~ 302 (359)
|+-+ + .+++++|+++|+.+. | |-.+|.++ ..+.++|++.+-+==-...
T Consensus 91 --sP~~-------~--------~ev~~~a~~~~ip~~---------P--G~~TptEi----~~Ale~G~~~lK~FPa~~~ 138 (211)
T COG0800 91 --SPGL-------N--------PEVAKAANRYGIPYI---------P--GVATPTEI----MAALELGASALKFFPAEVV 138 (211)
T ss_pred --CCCC-------C--------HHHHHHHHhCCCccc---------C--CCCCHHHH----HHHHHcChhheeecCcccc
Confidence 2211 1 267889999999762 1 23465553 3456789987776322222
Q ss_pred CcHHHHHHHHHHHHHhCCCceEEEEeCCCCCcHHHHHHHHHHcCCCEEe-ceee
Q 018252 303 GTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQVSPMHAK-PCFT 355 (359)
Q Consensus 303 ~~P~~v~~lv~~l~~~~p~~~L~~H~HNd~GLAlANalaAv~AGa~~ID-~tl~ 355 (359)
+-| .+++.+.-=+|+++ +=-+-|-...|.-.=+.+|+.-+- ++.+
T Consensus 139 Gg~----~~~ka~~gP~~~v~----~~pTGGVs~~N~~~yla~gv~avG~Gs~l 184 (211)
T COG0800 139 GGP----AMLKALAGPFPQVR----FCPTGGVSLDNAADYLAAGVVAVGLGSWL 184 (211)
T ss_pred CcH----HHHHHHcCCCCCCe----EeecCCCCHHHHHHHHhCCceEEecCccc
Confidence 222 34444444445543 334667788899888888876665 4443
No 199
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=94.86 E-value=0.061 Score=47.82 Aligned_cols=169 Identities=17% Similarity=0.191 Sum_probs=84.5
Q ss_pred HHHHHhCCCCEEEEeccCCCCCcCCCCCHHHHHHHhhhcCCCeEEEEeC-----C---------------h----HhHHH
Q 018252 154 IRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPVLTP-----N---------------L----KGFEA 209 (359)
Q Consensus 154 a~~L~~aGv~~IEvG~fvspk~vPq~~D~~ev~~~l~~~~~~~l~~l~~-----n---------------~----~gie~ 209 (359)
++.+.++|++.||+.......+.+...+.+++.+.+++ .++.+.++.. . . +.++.
T Consensus 1 l~~~~~~G~~~vE~~~~~~~~~~~~~~~~~~~~~~~~~-~gl~i~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~i~~ 79 (213)
T PF01261_consen 1 LEAAAEAGFDGVELRFDDGQPWDEKDDEAEELRRLLED-YGLKIASLHPPTNFWSPDEENGSANDEREEALEYLKKAIDL 79 (213)
T ss_dssp HHHHHHTTHSEEEEEHHHHSHHTHHHHHHHHHHHHHHH-TTCEEEEEEEEESSSCTGTTSTTSSSHHHHHHHHHHHHHHH
T ss_pred ChHHHHcCCCEEEEecCCCcccccchHHHHHHHHHHHH-cCCeEEEEecccccccccccccCcchhhHHHHHHHHHHHHH
Confidence 35678899999999863211100000123344444433 3555544332 1 1 12445
Q ss_pred HHHcCCCEEEEecCCchHHHHhhhcCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHHC
Q 018252 210 AIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDM 289 (359)
Q Consensus 210 a~~aGv~~V~i~~s~S~~~~~~n~~~t~~e~l~~i~~~i~~Ak~~G~~V~~~is~~fg~~~~~r~~~e~l~~~a~~l~~~ 289 (359)
|...|++.+.+....-+...........+...+.++.+.++|++.|+.+...-. .........+.+.+.++++.+-
T Consensus 80 a~~lg~~~i~~~~g~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~lE~~--~~~~~~~~~~~~~~~~~l~~~~-- 155 (213)
T PF01261_consen 80 AKRLGAKYIVVHSGRYPSGPEDDTEENWERLAENLRELAEIAEEYGVRIALENH--PGPFSETPFSVEEIYRLLEEVD-- 155 (213)
T ss_dssp HHHHTBSEEEEECTTESSSTTSSHHHHHHHHHHHHHHHHHHHHHHTSEEEEE-S--SSSSSSEESSHHHHHHHHHHHT--
T ss_pred HHHhCCCceeecCcccccccCCCHHHHHHHHHHHHHHHHhhhhhhcceEEEecc--cCccccchhhHHHHHHHHhhcC--
Confidence 556799998887551000000011122456677888999999999987633221 1111111223356555555544
Q ss_pred CcCEEEEc-CCCCCCcH--HHHHHHHHHHHHhCCCceEEEEeCCCCC
Q 018252 290 GCFEISLG-DTIGVGTP--GTVVPMLEAVMAVVPVEKLAVHLHDTYG 333 (359)
Q Consensus 290 Gad~I~L~-DT~G~~~P--~~v~~lv~~l~~~~p~~~L~~H~HNd~G 333 (359)
-+.+.++ || |.+.. ....+.++.+... ...+|.+|..+
T Consensus 156 -~~~~~i~~D~-~h~~~~~~~~~~~i~~~~~~----i~~vHi~D~~~ 196 (213)
T PF01261_consen 156 -SPNVGICFDT-GHLIMAGEDPDEAIKRLAPR----IKHVHIKDANG 196 (213)
T ss_dssp -TTTEEEEEEH-HHHHHTTHHHHHHHHHHHHG----EEEEEE-EESS
T ss_pred -CCcceEEEeh-HHHHHcCCCHHHHHHHhhcc----eeEEEEeCCCC
Confidence 3324333 43 32222 3444555555443 68899988877
No 200
>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=94.85 E-value=0.94 Score=45.26 Aligned_cols=140 Identities=17% Similarity=0.047 Sum_probs=82.0
Q ss_pred HHHHHHcCCCEEEEecC--------CchHHHHh--hhcCCHHHHHHHHHHHHHHHHhC-C------CcEEEEEeeeecCC
Q 018252 207 FEAAIAAGAKEVAIFAS--------ASEAFSKS--NINCSIEDSLVRYRAVAHAAKVL-S------IPVRGYVSCVVGCP 269 (359)
Q Consensus 207 ie~a~~aGv~~V~i~~s--------~S~~~~~~--n~~~t~~e~l~~i~~~i~~Ak~~-G------~~V~~~is~~fg~~ 269 (359)
.++|.++|.|-|.+... .|+..++. .+|-+.++-..-+.++++..|+. | +.|..-++.. ..
T Consensus 150 A~~a~~aGfDgVeih~ahGyLl~qFlsp~~N~R~D~yGGslenR~r~~~eii~~vr~~vg~~~~~~~~v~~R~s~~--~~ 227 (353)
T cd04735 150 TRRAIEAGFDGVEIHGANGYLIQQFFSPHSNRRTDEWGGSLENRMRFPLAVVKAVQEVIDKHADKDFILGYRFSPE--EP 227 (353)
T ss_pred HHHHHHcCCCEEEEccccchHHHHhcCCccCCCCcccCCcHHHHHHHHHHHHHHHHHHhccccCCCceEEEEECcc--cc
Confidence 45667789998877543 34555432 35667777777777777777664 3 2343334321 11
Q ss_pred CCCCCCHHHHHHHHHHHHHCCcCEEEEcCCC----CCCcHHHHHHHHHHHHHhC-CCceEEEEeCCCCCcHHHHHHHHHH
Q 018252 270 VEGAIPPSKVAYVAKELHDMGCFEISLGDTI----GVGTPGTVVPMLEAVMAVV-PVEKLAVHLHDTYGQSLPNILISLQ 344 (359)
Q Consensus 270 ~~~r~~~e~l~~~a~~l~~~Gad~I~L~DT~----G~~~P~~v~~lv~~l~~~~-p~~~L~~H~HNd~GLAlANalaAv~ 344 (359)
..+-.++++..++++.+.++|+|-|.+.-.. ....|..-..+++.+++.+ +.++|-..+--+ ....+..+++
T Consensus 228 ~~~g~~~ee~~~i~~~L~~~GvD~I~Vs~g~~~~~~~~~~~~~~~~~~~ik~~~~~~iPVi~~Ggi~---t~e~ae~~l~ 304 (353)
T cd04735 228 EEPGIRMEDTLALVDKLADKGLDYLHISLWDFDRKSRRGRDDNQTIMELVKERIAGRLPLIAVGSIN---TPDDALEALE 304 (353)
T ss_pred cCCCCCHHHHHHHHHHHHHcCCCEEEeccCccccccccCCcchHHHHHHHHHHhCCCCCEEEECCCC---CHHHHHHHHH
Confidence 1234567889999999999999998874311 0111111234556666655 245555543321 2455667777
Q ss_pred cCCCEEe
Q 018252 345 VSPMHAK 351 (359)
Q Consensus 345 AGa~~ID 351 (359)
.|||.|-
T Consensus 305 ~gaD~V~ 311 (353)
T cd04735 305 TGADLVA 311 (353)
T ss_pred cCCChHH
Confidence 7887653
No 201
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=94.79 E-value=2 Score=40.18 Aligned_cols=167 Identities=16% Similarity=0.075 Sum_probs=83.0
Q ss_pred HHHHHHHHHhCCCCEEEEeccCCCCCcCCCCCHHHHHHHhhhcCCCeEEEEe----------------CC-----hH---
Q 018252 150 KVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPVLT----------------PN-----LK--- 205 (359)
Q Consensus 150 k~~ia~~L~~aGv~~IEvG~fvspk~vPq~~D~~ev~~~l~~~~~~~l~~l~----------------~n-----~~--- 205 (359)
-.+.++.+.++|++.||+..+.. .+.+++.+.++ ..+++++++. +. .+
T Consensus 16 l~e~~~~~~e~G~~~vEl~~~~~-------~~~~~l~~~l~-~~gl~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (254)
T TIGR03234 16 FLERFAAAAQAGFTGVEYLFPYD-------WDAEALKARLA-AAGLEQVLFNLPAGDWAAGERGIACLPGREEEFREGVA 87 (254)
T ss_pred HHHHHHHHHHcCCCEEEecCCcc-------CCHHHHHHHHH-HcCCeEEEEeCCCCccccCCCccccCCccHHHHHHHHH
Confidence 34456666789999999975321 24566655554 3455555442 11 01
Q ss_pred -hHHHHHHcCCCEEEEecCCchHHHHhhhcCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHH
Q 018252 206 -GFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAK 284 (359)
Q Consensus 206 -gie~a~~aGv~~V~i~~s~S~~~~~~n~~~t~~e~l~~i~~~i~~Ak~~G~~V~~~is~~fg~~~~~r~~~e~l~~~a~ 284 (359)
-++.|.+.|++.|.+.....+ .. .......+...+.+++++++|++.|+.+...-..-+..+...-.+++...++++
T Consensus 88 ~~i~~a~~lg~~~i~~~~g~~~-~~-~~~~~~~~~~~~~l~~l~~~A~~~gi~l~lE~~~~~~~~~~~l~t~~~~~~li~ 165 (254)
T TIGR03234 88 LAIAYARALGCPQVNCLAGKRP-AG-VSPEEARATLVENLRYAADALDRIGLTLLIEPINSFDMPGFFLTTTEQALAVID 165 (254)
T ss_pred HHHHHHHHhCCCEEEECcCCCC-CC-CCHHHHHHHHHHHHHHHHHHHHhcCCEEEEEECCcccCCCChhcCHHHHHHHHH
Confidence 234455679998887543211 00 000001234557788899999999987633210001111111246666666665
Q ss_pred HHHHCCcCEE-EEcCCCCCCcH-HHHHHHHHHHHHhCCCceEEEEeCCCCC
Q 018252 285 ELHDMGCFEI-SLGDTIGVGTP-GTVVPMLEAVMAVVPVEKLAVHLHDTYG 333 (359)
Q Consensus 285 ~l~~~Gad~I-~L~DT~G~~~P-~~v~~lv~~l~~~~p~~~L~~H~HNd~G 333 (359)
.+ +.+.+ .+-|+.=...- +...++++. +.+-...+|..|+.|
T Consensus 166 ~v---~~~~~~i~~D~~h~~~~~e~~~~~i~~----~~~~i~~vHi~D~~~ 209 (254)
T TIGR03234 166 DV---GRENLKLQYDLYHMQRMGGDLARTLAA----YAAHIGHVQIADNPG 209 (254)
T ss_pred Hh---CCCCEeEeeehhhhhhhCCCHHHHHHH----hhccEeEEEeCCCCC
Confidence 54 33333 23454322211 112233332 233457788887643
No 202
>PRK05628 coproporphyrinogen III oxidase; Validated
Probab=94.77 E-value=1.6 Score=43.85 Aligned_cols=108 Identities=22% Similarity=0.208 Sum_probs=71.1
Q ss_pred HHHHHHHhhh----cCCCeEEEEe-C---ChHhHHHHHHcCCCEEEEecCCchHHHHhhhcCCHHHHHHHHHHHHHHHHh
Q 018252 182 ARDVMEAVRD----LEGARLPVLT-P---NLKGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKV 253 (359)
Q Consensus 182 ~~ev~~~l~~----~~~~~l~~l~-~---n~~gie~a~~aGv~~V~i~~s~S~~~~~~n~~~t~~e~l~~i~~~i~~Ak~ 253 (359)
.+++++.++. .++.++..-+ | +.+.++...++|+.+|.+-+..-.-.....+|+. ...+.+.++++.+++
T Consensus 78 l~~ll~~i~~~~~~~~~~e~t~e~~p~~i~~e~l~~l~~~G~~rvslGvQS~~~~~L~~l~R~--~s~~~~~~a~~~l~~ 155 (375)
T PRK05628 78 LARVLDAVRDTFGLAPGAEVTTEANPESTSPEFFAALRAAGFTRVSLGMQSAAPHVLAVLDRT--HTPGRAVAAAREARA 155 (375)
T ss_pred HHHHHHHHHHhCCCCCCCEEEEEeCCCCCCHHHHHHHHHcCCCEEEEecccCCHHHHHHcCCC--CCHHHHHHHHHHHHH
Confidence 3445555543 2455665544 3 2356777778999999997633322333345543 233456677888899
Q ss_pred CCCc-EEEEEeeeecCCCCCCCCHHHHHHHHHHHHHCCcCEEEE
Q 018252 254 LSIP-VRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISL 296 (359)
Q Consensus 254 ~G~~-V~~~is~~fg~~~~~r~~~e~l~~~a~~l~~~Gad~I~L 296 (359)
.|+. +.+.++ +|.|.. +.+.+.+-++.+.++|++.|.+
T Consensus 156 ~g~~~v~~dli--~GlPgq---t~~~~~~tl~~~~~l~~~~i~~ 194 (375)
T PRK05628 156 AGFEHVNLDLI--YGTPGE---SDDDWRASLDAALEAGVDHVSA 194 (375)
T ss_pred cCCCcEEEEEe--ccCCCC---CHHHHHHHHHHHHhcCCCEEEe
Confidence 9998 777665 777754 6778888889999999987754
No 203
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=94.77 E-value=1.3 Score=41.82 Aligned_cols=173 Identities=13% Similarity=0.071 Sum_probs=88.1
Q ss_pred HHHHHHHHHHhCCCCEEEEeccCCCCCcCCC--CCHHHHHHHhhhcCCCeEEEEeC-------C-----h-------H--
Q 018252 149 VKVELIRRLVSSGLPVVEATSFVSPKWVPQL--ADARDVMEAVRDLEGARLPVLTP-------N-----L-------K-- 205 (359)
Q Consensus 149 ~k~~ia~~L~~aGv~~IEvG~fvspk~vPq~--~D~~ev~~~l~~~~~~~l~~l~~-------n-----~-------~-- 205 (359)
.-.+.++.+.++|++.||++........|.. .+.+++.+.++ -.++++.++.+ | . +
T Consensus 14 ~l~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~~~~~l~~~~~-~~gl~v~s~~~~~~~~~~~~~~~~~~~r~~~~~~~ 92 (275)
T PRK09856 14 PIEHAFRDASELGYDGIEIWGGRPHAFAPDLKAGGIKQIKALAQ-TYQMPIIGYTPETNGYPYNMMLGDEHMRRESLDMI 92 (275)
T ss_pred CHHHHHHHHHHcCCCEEEEccCCccccccccCchHHHHHHHHHH-HcCCeEEEecCcccCcCccccCCCHHHHHHHHHHH
Confidence 3556777888999999999642111111222 23444444443 23455544421 1 1 1
Q ss_pred --hHHHHHHcCCCEEEEecCCchHHHHhhhcCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCC--CCCHHHHHH
Q 018252 206 --GFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEG--AIPPSKVAY 281 (359)
Q Consensus 206 --gie~a~~aGv~~V~i~~s~S~~~~~~n~~~t~~e~l~~i~~~i~~Ak~~G~~V~~~is~~fg~~~~~--r~~~e~l~~ 281 (359)
.++.|...|++.+.+...... ... ......+...+.++.++++|+++|+.+. +. .-.|+.+ ..+++.+.+
T Consensus 93 ~~~i~~a~~lGa~~i~~~~~~~~-~~~-~~~~~~~~~~~~l~~l~~~a~~~gv~l~--iE--~~~~~~~~~~~t~~~~~~ 166 (275)
T PRK09856 93 KLAMDMAKEMNAGYTLISAAHAG-YLT-PPNVIWGRLAENLSELCEYAENIGMDLI--LE--PLTPYESNVVCNANDVLH 166 (275)
T ss_pred HHHHHHHHHhCCCEEEEcCCCCC-CCC-CHHHHHHHHHHHHHHHHHHHHHcCCEEE--Ee--cCCCCcccccCCHHHHHH
Confidence 234555679998877532110 000 0011235667788999999999998663 22 1112221 235677666
Q ss_pred HHHHHHHCCcCEEEEcCCCCCC-cHHHHHHHHHHHHHhCCCceEEEEeCCCCCc
Q 018252 282 VAKELHDMGCFEISLGDTIGVG-TPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQ 334 (359)
Q Consensus 282 ~a~~l~~~Gad~I~L~DT~G~~-~P~~v~~lv~~l~~~~p~~~L~~H~HNd~GL 334 (359)
+++.+-. ...-.+.|+.=.. ...++.+.++. ++.....+|.+|..+-
T Consensus 167 l~~~~~~--~~v~~~~D~~h~~~~~~~~~~~i~~----~~~rI~~vHi~D~~~~ 214 (275)
T PRK09856 167 ALALVPS--PRLFSMVDICAPYVQAEPVMSYFDK----LGDKLRHLHIVDSDGA 214 (275)
T ss_pred HHHHcCC--CcceeEEeecchhcCCCCHHHHHHH----hCCcEEEEEEEcCCCC
Confidence 6664432 1122234774321 22333333333 3444788999987654
No 204
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=94.74 E-value=0.95 Score=43.45 Aligned_cols=79 Identities=18% Similarity=0.164 Sum_probs=56.3
Q ss_pred CHHHHHHHHHHHHHCCcCEEEE--c--CCCC----CCcHHHHHHHHHHHHHhCCCceEEEEeCCCCC--cHHHHHHHHHH
Q 018252 275 PPSKVAYVAKELHDMGCFEISL--G--DTIG----VGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYG--QSLPNILISLQ 344 (359)
Q Consensus 275 ~~e~l~~~a~~l~~~Gad~I~L--~--DT~G----~~~P~~v~~lv~~l~~~~p~~~L~~H~HNd~G--LAlANalaAv~ 344 (359)
+++.+.+.++.+.++|+|.|.| . .+.+ .-.|..+.++++++++.+ +.+|.+-.--... -...-+.++.+
T Consensus 109 ~~~~~~~~a~~~~~~G~d~ielN~~cP~~~~~~~~~~~~~~~~eiv~~vr~~~-~~pv~vKl~~~~~~~~~~~~a~~l~~ 187 (289)
T cd02810 109 SKEDYVELARKIERAGAKALELNLSCPNVGGGRQLGQDPEAVANLLKAVKAAV-DIPLLVKLSPYFDLEDIVELAKAAER 187 (289)
T ss_pred CHHHHHHHHHHHHHhCCCEEEEEcCCCCCCCCcccccCHHHHHHHHHHHHHcc-CCCEEEEeCCCCCHHHHHHHHHHHHH
Confidence 7789999999999999996655 2 2211 236889999999999986 3466665443333 33455566788
Q ss_pred cCCCEEecee
Q 018252 345 VSPMHAKPCF 354 (359)
Q Consensus 345 AGa~~ID~tl 354 (359)
+||+.|.++-
T Consensus 188 ~Gad~i~~~~ 197 (289)
T cd02810 188 AGADGLTAIN 197 (289)
T ss_pred cCCCEEEEEc
Confidence 9999998763
No 205
>PRK13753 dihydropteroate synthase; Provisional
Probab=94.73 E-value=3.4 Score=40.32 Aligned_cols=189 Identities=14% Similarity=0.107 Sum_probs=107.9
Q ss_pred CCCCCHHHHHHHHHHHHhCCCCEEEEecc-CCCCCcCCCCCHHHHH---HHhhhcC--CCeEEEEeCChHhHHHHHHcCC
Q 018252 142 KNTVPTGVKVELIRRLVSSGLPVVEATSF-VSPKWVPQLADARDVM---EAVRDLE--GARLPVLTPNLKGFEAAIAAGA 215 (359)
Q Consensus 142 ~~~~~~~~k~~ia~~L~~aGv~~IEvG~f-vspk~vPq~~D~~ev~---~~l~~~~--~~~l~~l~~n~~gie~a~~aGv 215 (359)
|..++.+.-++-++.|.+.|.++|++|.- ..|..-| ....+|+. ..++.+. +..+++=+.+.+-++.|+++|+
T Consensus 19 g~~~~~d~a~~~a~~m~~~GAdIIDIGgeSTrPga~~-vs~eeE~~Rv~pvI~~l~~~~~~ISIDT~~~~va~~al~aGa 97 (279)
T PRK13753 19 SRRLDPAGAVTAAIEMLRVGSDVVDVGPAASHPDARP-VSPADEIRRIAPLLDALSDQMHRVSIDSFQPETQRYALKRGV 97 (279)
T ss_pred CCCCCHHHHHHHHHHHHHCCCcEEEECCCCCCCCCCc-CCHHHHHHHHHHHHHHHHhCCCcEEEECCCHHHHHHHHHcCC
Confidence 44578899999999999999999999973 3343221 11123333 3343322 3444444456678899999999
Q ss_pred CEEEEecCCchHHHHhhhcCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCC----CCCCCC--------HHHHHHHH
Q 018252 216 KEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCP----VEGAIP--------PSKVAYVA 283 (359)
Q Consensus 216 ~~V~i~~s~S~~~~~~n~~~t~~e~l~~i~~~i~~Ak~~G~~V~~~is~~fg~~----~~~r~~--------~e~l~~~a 283 (359)
+.|+=.-.. ..+ .+.+.+.+.|..+ .+++.-+.+ ...... .+++.+-+
T Consensus 98 diINDVsg~-----------~d~-------~~~~vva~~~~~v--VlmH~~~~~~~~~~~~~~~~~dv~~ev~~~l~~~i 157 (279)
T PRK13753 98 GYLNDIQGF-----------PDP-------ALYPDIAEADCRL--VVMHSAQRDGIATRTGHLRPEDALDEIVRFFEARV 157 (279)
T ss_pred CEEEeCCCC-----------Cch-------HHHHHHHHcCCCE--EEEecCCCCCCCCcccCCCcchHHHHHHHHHHHHH
Confidence 876543211 111 2223334556655 334332211 011111 12444556
Q ss_pred HHHHHCCc--CEEEEcCCCCCC---cHHHHHHHHHHHHHh-----CCCc-----------eEEEEeCCCCCcHHHHHHHH
Q 018252 284 KELHDMGC--FEISLGDTIGVG---TPGTVVPMLEAVMAV-----VPVE-----------KLAVHLHDTYGQSLPNILIS 342 (359)
Q Consensus 284 ~~l~~~Ga--d~I~L~DT~G~~---~P~~v~~lv~~l~~~-----~p~~-----------~L~~H~HNd~GLAlANalaA 342 (359)
+.+.++|+ +.|.|==-+|.+ ++++-.++++.+.+- +|-. .++...++...-.+|.+..|
T Consensus 158 ~~~~~~Gi~~~~IilDPGiGF~k~k~~~~n~~ll~~l~~l~~~~g~PvLvg~SRKsfig~~~~~~~~~R~~~T~a~~~~a 237 (279)
T PRK13753 158 SALRRSGVAADRLILDPGMGFFLSPAPETSLHVLSNLQKLKSALGLPLLVSVSRKSFLGATVGLPVKDLGPASLAAELHA 237 (279)
T ss_pred HHHHHcCCChhhEEEeCCCCCCCCCChHHHHHHHHhHHHHHHhCCCceEEEccHhHHHHHHcCCChhhhhHhHHHHHHHH
Confidence 66788998 468877777863 677777777665432 3410 12223344444456777888
Q ss_pred HHcCCCEEe
Q 018252 343 LQVSPMHAK 351 (359)
Q Consensus 343 v~AGa~~ID 351 (359)
+..||++|-
T Consensus 238 ~~~Ga~ivR 246 (279)
T PRK13753 238 IGNGADYVR 246 (279)
T ss_pred HHcCCCEEE
Confidence 999999874
No 206
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=94.72 E-value=1.1 Score=44.61 Aligned_cols=136 Identities=21% Similarity=0.103 Sum_probs=84.8
Q ss_pred HHHHHHcCCCEEEEecCC--------chHHHHh--hhcCCHHHHHHHHHHHHHHHHhC-CCcEEEEEeeeecCCCCCCCC
Q 018252 207 FEAAIAAGAKEVAIFASA--------SEAFSKS--NINCSIEDSLVRYRAVAHAAKVL-SIPVRGYVSCVVGCPVEGAIP 275 (359)
Q Consensus 207 ie~a~~aGv~~V~i~~s~--------S~~~~~~--n~~~t~~e~l~~i~~~i~~Ak~~-G~~V~~~is~~fg~~~~~r~~ 275 (359)
.++|.++|.|-|.+...- |+..++. .+|-+.++-..-+.++++..|+. +..|.+-++..-.. .+-.+
T Consensus 148 A~~a~~aGfDgVeih~ahGyLl~qFlSp~~N~RtD~yGGslenR~Rf~~eii~~ir~~~~~~v~vRis~~d~~--~~G~~ 225 (337)
T PRK13523 148 AVRAKEAGFDVIEIHGAHGYLINEFLSPLSNKRTDEYGGSPENRYRFLREIIDAVKEVWDGPLFVRISASDYH--PGGLT 225 (337)
T ss_pred HHHHHHcCCCEEEEccccchHHHHhcCCccCCcCCCCCCCHHHHHHHHHHHHHHHHHhcCCCeEEEecccccC--CCCCC
Confidence 456677899988876542 4544332 35667777677777777777765 34444444421111 12357
Q ss_pred HHHHHHHHHHHHHCCcCEEEEcCCCCCC-------cHHHHHHHHHHHHHhCCCce-EEEEeCCCCCcHHHHHHHHHHcC-
Q 018252 276 PSKVAYVAKELHDMGCFEISLGDTIGVG-------TPGTVVPMLEAVMAVVPVEK-LAVHLHDTYGQSLPNILISLQVS- 346 (359)
Q Consensus 276 ~e~l~~~a~~l~~~Gad~I~L~DT~G~~-------~P~~v~~lv~~l~~~~p~~~-L~~H~HNd~GLAlANalaAv~AG- 346 (359)
+++..++++.+.+.|+|-|.+. .|.. .|....++.+.+++.++ ++ +....-++ ...+..+++.|
T Consensus 226 ~~e~~~i~~~l~~~gvD~i~vs--~g~~~~~~~~~~~~~~~~~~~~ik~~~~-ipVi~~G~i~~----~~~a~~~l~~g~ 298 (337)
T PRK13523 226 VQDYVQYAKWMKEQGVDLIDVS--SGAVVPARIDVYPGYQVPFAEHIREHAN-IATGAVGLITS----GAQAEEILQNNR 298 (337)
T ss_pred HHHHHHHHHHHHHcCCCEEEeC--CCCCCCCCCCCCccccHHHHHHHHhhcC-CcEEEeCCCCC----HHHHHHHHHcCC
Confidence 8999999999999999998883 4431 12223466777888765 34 34433333 35677888887
Q ss_pred CCEEe
Q 018252 347 PMHAK 351 (359)
Q Consensus 347 a~~ID 351 (359)
||.|-
T Consensus 299 ~D~V~ 303 (337)
T PRK13523 299 ADLIF 303 (337)
T ss_pred CChHH
Confidence 77763
No 207
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=94.70 E-value=0.13 Score=53.71 Aligned_cols=72 Identities=21% Similarity=0.102 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHHCCcCEEEEcCCCCCCcHHHHHHHHHHHHHhCCCceEEEEeCCCCCcHHHHHHHHHHcCCCEEecee
Q 018252 277 SKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQVSPMHAKPCF 354 (359)
Q Consensus 277 e~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~lv~~l~~~~p~~~L~~H~HNd~GLAlANalaAv~AGa~~ID~tl 354 (359)
+...+.++.+.+.|++.|.| |+.- ..|..+.++++.+++.+|++++-. +.+.-...+..++++||+.|++.+
T Consensus 224 ~~~~~ra~~Lv~aGVd~i~~-D~a~-g~~~~~~~~i~~i~~~~~~~~vi~----g~~~t~~~~~~l~~~G~d~i~vg~ 295 (475)
T TIGR01303 224 GDVGGKAKALLDAGVDVLVI-DTAH-GHQVKMISAIKAVRALDLGVPIVA----GNVVSAEGVRDLLEAGANIIKVGV 295 (475)
T ss_pred ccHHHHHHHHHHhCCCEEEE-eCCC-CCcHHHHHHHHHHHHHCCCCeEEE----eccCCHHHHHHHHHhCCCEEEECC
Confidence 35668899999999999887 7776 788999999999999999877766 667778899999999999999443
No 208
>TIGR00559 pdxJ pyridoxine 5'-phosphate synthase. PdxJ is required in the biosynthesis of pyridoxine (vitamin B6), a precursor to the enzyme cofactor pyridoxal phosphate. ECOCYC describes the predicted reaction equation as 1-amino-propan-2-one-3-phosphate + deoxyxylulose-5-phosphate = pyridoxine-5'-phosphate. The product of that reaction is oxidized by PdxH to pyridoxal 5'-phosphate.
Probab=94.70 E-value=0.18 Score=47.88 Aligned_cols=107 Identities=18% Similarity=0.301 Sum_probs=69.4
Q ss_pred CCCeEEEEe-CChHhHHHHHHcCCCEEEEecCCchHHHHhhhcC-CHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCC
Q 018252 193 EGARLPVLT-PNLKGFEAAIAAGAKEVAIFASASEAFSKSNINC-SIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPV 270 (359)
Q Consensus 193 ~~~~l~~l~-~n~~gie~a~~aGv~~V~i~~s~S~~~~~~n~~~-t~~e~l~~i~~~i~~Ak~~G~~V~~~is~~fg~~~ 270 (359)
.+++++.++ |+.++++.|.+.|++.|-+++. .|... ++. ..++.++++..++++|+++|+.|.+
T Consensus 122 ~gI~VSLFiDP~~~qi~~A~~~GAd~VELhTG---~YA~a-~~~~~~~~el~~i~~aa~~A~~lGL~VnA---------- 187 (237)
T TIGR00559 122 AGIEVSLFIDADKDQISAAAEVGADRIEIHTG---PYANA-YNKKEMAEELQRIVKASVHAHSLGLKVNA---------- 187 (237)
T ss_pred CCCEEEEEeCCCHHHHHHHHHhCcCEEEEech---hhhcC-CCchhHHHHHHHHHHHHHHHHHcCCEEec----------
Confidence 566777777 5778899999999999999764 22221 121 2244599999999999999998831
Q ss_pred CCCCCHHHHHHHHHHHHHCC-cCEEEE-----cCCCCCCcHHHHHHHHHHHH
Q 018252 271 EGAIPPSKVAYVAKELHDMG-CFEISL-----GDTIGVGTPGTVVPMLEAVM 316 (359)
Q Consensus 271 ~~r~~~e~l~~~a~~l~~~G-ad~I~L-----~DT~G~~~P~~v~~lv~~l~ 316 (359)
+.-.+.+.+..+++. .+ ..++++ ++.+=++.+..|.++.+.++
T Consensus 188 GHgLny~Nv~~i~~~---~~~i~EvnIGHsiia~Al~~Gl~~AV~~m~~~~~ 236 (237)
T TIGR00559 188 GHGLNYHNVKYFAEI---LPYLDELNIGHAIIADAVYLGLEEAIREMRDLIK 236 (237)
T ss_pred CCCCCHHhHHHHHhC---CCCceEEecCHHHHHHHHHHhHHHHHHHHHHHHh
Confidence 123565666555542 13 556664 35555555666666655543
No 209
>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.
Probab=94.67 E-value=1.2 Score=44.29 Aligned_cols=140 Identities=19% Similarity=0.073 Sum_probs=85.1
Q ss_pred HHHHHHcCCCEEEEecCC--------chHHHHh--hhcCCHHHHHHHHHHHHHHHHhC-CC-cEEEEEeeeecCCCC-CC
Q 018252 207 FEAAIAAGAKEVAIFASA--------SEAFSKS--NINCSIEDSLVRYRAVAHAAKVL-SI-PVRGYVSCVVGCPVE-GA 273 (359)
Q Consensus 207 ie~a~~aGv~~V~i~~s~--------S~~~~~~--n~~~t~~e~l~~i~~~i~~Ak~~-G~-~V~~~is~~fg~~~~-~r 273 (359)
.++|.++|.|-|.+...- |+..++. .+|-+.++-..-+.++++..|+. |. .|.+-++..=.-+.. .-
T Consensus 158 A~~a~~aGfDgVeih~ahGyLl~qFlSp~~N~R~D~yGGslenR~rf~~eii~air~~vg~d~v~vRis~~~~~~~~~~~ 237 (338)
T cd02933 158 ARNAIEAGFDGVEIHGANGYLIDQFLRDGSNKRTDEYGGSIENRARFLLEVVDAVAEAIGADRVGIRLSPFGTFNDMGDS 237 (338)
T ss_pred HHHHHHcCCCEEEEccccchhHHHhcCCccCCCCCcCCCcHHHhhhHHHHHHHHHHHHhCCCceEEEECccccCCCCCCC
Confidence 456677899988775332 3333322 25666776667777777777764 44 343334311000000 12
Q ss_pred CCHHHHHHHHHHHHHCCcCEEEEc--CCCCCCcHHHHHHHHHHHHHhCCCceEEEEeCCCCCcHHHHHHHHHHcC-CCEE
Q 018252 274 IPPSKVAYVAKELHDMGCFEISLG--DTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQVS-PMHA 350 (359)
Q Consensus 274 ~~~e~l~~~a~~l~~~Gad~I~L~--DT~G~~~P~~v~~lv~~l~~~~p~~~L~~H~HNd~GLAlANalaAv~AG-a~~I 350 (359)
.++++..++++.+.+.|+|.|.+. .+... .+....++.+.+++.++.--+..... + ...+..+++.| ||.|
T Consensus 238 ~~~ee~~~~~~~l~~~g~d~i~vs~g~~~~~-~~~~~~~~~~~ik~~~~ipvi~~G~i-~----~~~a~~~l~~g~~D~V 311 (338)
T cd02933 238 DPEATFSYLAKELNKRGLAYLHLVEPRVAGN-PEDQPPDFLDFLRKAFKGPLIAAGGY-D----AESAEAALADGKADLV 311 (338)
T ss_pred CCHHHHHHHHHHHHHcCCcEEEEecCCCCCc-ccccchHHHHHHHHHcCCCEEEECCC-C----HHHHHHHHHcCCCCEE
Confidence 478899999999999999988882 22221 13445677888888875323444444 2 67788999987 8877
Q ss_pred ec
Q 018252 351 KP 352 (359)
Q Consensus 351 D~ 352 (359)
-.
T Consensus 312 ~~ 313 (338)
T cd02933 312 AF 313 (338)
T ss_pred Ee
Confidence 54
No 210
>PRK06294 coproporphyrinogen III oxidase; Provisional
Probab=94.64 E-value=1.1 Score=44.95 Aligned_cols=107 Identities=11% Similarity=0.088 Sum_probs=70.2
Q ss_pred HHHHHHhhhcCCCeEEEEe-C---ChHhHHHHHHcCCCEEEEecCCchHHHHhhhcCCHHHHHHHHHHHHHHHHhCCCc-
Q 018252 183 RDVMEAVRDLEGARLPVLT-P---NLKGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIP- 257 (359)
Q Consensus 183 ~ev~~~l~~~~~~~l~~l~-~---n~~gie~a~~aGv~~V~i~~s~S~~~~~~n~~~t~~e~l~~i~~~i~~Ak~~G~~- 257 (359)
+++++.++..++.++..-+ | +.+.++...++|+.+|.+-+..-+-.....+|+.. ..+.+.++++.+++.|+.
T Consensus 78 ~~ll~~i~~~~~~eit~E~~P~~~~~~~l~~l~~~G~nrislGvQS~~~~~L~~l~R~~--~~~~~~~ai~~~~~~g~~~ 155 (370)
T PRK06294 78 QDILKTLEAPHATEITLEANPENLSESYIRALALTGINRISIGVQTFDDPLLKLLGRTH--SSSKAIDAVQECSEHGFSN 155 (370)
T ss_pred HHHHHHHHhCCCCeEEEEeCCCCCCHHHHHHHHHCCCCEEEEccccCCHHHHHHcCCCC--CHHHHHHHHHHHHHcCCCe
Confidence 3344444443455665544 3 23557778889999998866433323333455421 234556778889999986
Q ss_pred EEEEEeeeecCCCCCCCCHHHHHHHHHHHHHCCcCEEEE
Q 018252 258 VRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISL 296 (359)
Q Consensus 258 V~~~is~~fg~~~~~r~~~e~l~~~a~~l~~~Gad~I~L 296 (359)
+.+.++ +|.|.. +.+.+.+-++.+.+++++.|.+
T Consensus 156 v~~Dli--~GlPgq---t~~~~~~~l~~~~~l~~~~is~ 189 (370)
T PRK06294 156 LSIDLI--YGLPTQ---SLSDFIVDLHQAITLPITHISL 189 (370)
T ss_pred EEEEee--cCCCCC---CHHHHHHHHHHHHccCCCeEEE
Confidence 766665 887754 7788888899999999987765
No 211
>COG2513 PrpB PEP phosphonomutase and related enzymes [Carbohydrate transport and metabolism]
Probab=94.63 E-value=0.4 Score=46.80 Aligned_cols=134 Identities=16% Similarity=0.211 Sum_probs=92.6
Q ss_pred HHHHHHcCCCEEEEec-CCchHHHHhhhc-CCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHH
Q 018252 207 FEAAIAAGAKEVAIFA-SASEAFSKSNIN-CSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAK 284 (359)
Q Consensus 207 ie~a~~aGv~~V~i~~-s~S~~~~~~n~~-~t~~e~l~~i~~~i~~Ak~~G~~V~~~is~~fg~~~~~r~~~e~l~~~a~ 284 (359)
...+-++|.+-+.+.- +++...-.--.| .|.++.++.++++++.. .++|.+.+-.-|| ++..+...++
T Consensus 31 A~la~~aGF~al~~sg~~vA~slG~pD~~~~t~~e~~~~vrrI~~a~---~lPv~vD~dtGfG-------~~~nvartV~ 100 (289)
T COG2513 31 ALLAERAGFKALYLSGAGVAASLGLPDLGITTLDEVLADARRITDAV---DLPVLVDIDTGFG-------EALNVARTVR 100 (289)
T ss_pred HHHHHHcCCeEEEeccHHHHHhcCCCccccccHHHHHHHHHHHHhhc---CCceEEeccCCCC-------cHHHHHHHHH
Confidence 4445557877766531 111122122233 35788888887777554 5888666654444 4788999999
Q ss_pred HHHHCCcCEEEEcCCCCC-----------CcHHHHHHHHHHHHHhCCCceE------EEEeCCCCCcHHHHHHHHHHcCC
Q 018252 285 ELHDMGCFEISLGDTIGV-----------GTPGTVVPMLEAVMAVVPVEKL------AVHLHDTYGQSLPNILISLQVSP 347 (359)
Q Consensus 285 ~l~~~Gad~I~L~DT~G~-----------~~P~~v~~lv~~l~~~~p~~~L------~~H~HNd~GLAlANalaAv~AGa 347 (359)
.+.++|+--|.|-|.++- ..+.++.+.|++.++..++..+ ....+..+.-++.-+.+=++|||
T Consensus 101 ~~~~aG~agi~iEDq~~pk~cgh~~gk~l~~~~e~v~rIkAa~~a~~~~~fvi~ARTda~~~~~ld~AI~Ra~AY~eAGA 180 (289)
T COG2513 101 ELEQAGAAGIHIEDQVGPKRCGHLPGKELVSIDEMVDRIKAAVEARRDPDFVIIARTDALLVEGLDDAIERAQAYVEAGA 180 (289)
T ss_pred HHHHcCcceeeeeecccchhcCCCCCCCcCCHHHHHHHHHHHHHhccCCCeEEEeehHHHHhccHHHHHHHHHHHHHcCC
Confidence 999999999999999984 5678888888888877653222 22444447778899999999999
Q ss_pred CEE
Q 018252 348 MHA 350 (359)
Q Consensus 348 ~~I 350 (359)
|.|
T Consensus 181 D~i 183 (289)
T COG2513 181 DAI 183 (289)
T ss_pred cEE
Confidence 987
No 212
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed
Probab=94.62 E-value=0.83 Score=45.23 Aligned_cols=105 Identities=17% Similarity=0.124 Sum_probs=67.9
Q ss_pred CHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHHCCcCEEEE---c-----CCCCCCcHHH
Q 018252 236 SIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISL---G-----DTIGVGTPGT 307 (359)
Q Consensus 236 t~~e~l~~i~~~i~~Ak~~G~~V~~~is~~fg~~~~~r~~~e~l~~~a~~l~~~Gad~I~L---~-----DT~G~~~P~~ 307 (359)
..++.++.++.+. ++.+..+.+.|. -.+++.+.++++.+.++|+|.|.| | +..|...+..
T Consensus 85 g~d~~~~~i~~~~---~~~~~pvi~sI~---------g~~~~e~~~~a~~~~~agad~ielN~scpp~~~~~~g~~~~~~ 152 (334)
T PRK07565 85 GPEEYLELIRRAK---EAVDIPVIASLN---------GSSAGGWVDYARQIEQAGADALELNIYYLPTDPDISGAEVEQR 152 (334)
T ss_pred CHHHHHHHHHHHH---HhcCCcEEEEec---------cCCHHHHHHHHHHHHHcCCCEEEEeCCCCCCCCCCccccHHHH
Confidence 3455555444332 223456655552 246678889999999999998877 2 3345555567
Q ss_pred HHHHHHHHHHhCCCceEEEEeCCCCCcHHHHHHHHHHcCCCEEece
Q 018252 308 VVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQVSPMHAKPC 353 (359)
Q Consensus 308 v~~lv~~l~~~~p~~~L~~H~HNd~GLAlANalaAv~AGa~~ID~t 353 (359)
+.++++.+++..+ +||.+-.=-+.+.-..-+.++.++|++.|..+
T Consensus 153 ~~eil~~v~~~~~-iPV~vKl~p~~~~~~~~a~~l~~~G~dgI~~~ 197 (334)
T PRK07565 153 YLDILRAVKSAVS-IPVAVKLSPYFSNLANMAKRLDAAGADGLVLF 197 (334)
T ss_pred HHHHHHHHHhccC-CcEEEEeCCCchhHHHHHHHHHHcCCCeEEEE
Confidence 8899999998764 57777754444333344555678999998654
No 213
>TIGR01212 radical SAM protein, TIGR01212 family. This uncharacterized protein family shows significant similarity to TIGR01211, a longer protein that is a histone acetyltransferase at its C-terminus and is a subunit of RNA polymerase II (in yeast). This family lacks the GNAT acetyltransferase domain.
Probab=94.60 E-value=1.7 Score=42.57 Aligned_cols=160 Identities=18% Similarity=0.169 Sum_probs=88.8
Q ss_pred CCCCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcCCCCCHHHHHHHhhhcCCCeEEEEeCChHhHHHHHHcCCC-EEEEe
Q 018252 143 NTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPVLTPNLKGFEAAIAAGAK-EVAIF 221 (359)
Q Consensus 143 ~~~~~~~k~~ia~~L~~aGv~~IEvG~fvspk~vPq~~D~~ev~~~l~~~~~~~l~~l~~n~~gie~a~~aGv~-~V~i~ 221 (359)
..++.+.-.+|++.+.+. -..+++....+|+.++ ++.++.++. ..++|++ .|.+-
T Consensus 89 t~l~~~~L~~l~~~i~~~-~~~~~isi~trpd~l~-----~e~l~~L~~------------------l~~~G~~~~i~lG 144 (302)
T TIGR01212 89 TYAPVEVLKEMYEQALSY-DDVVGLSVGTRPDCVP-----DEVLDLLAE------------------YVERGYEVWVELG 144 (302)
T ss_pred CCCCHHHHHHHHHHHhCC-CCEEEEEEEecCCcCC-----HHHHHHHHH------------------hhhCCceEEEEEc
Confidence 456777777777776653 2345555545554221 222333222 2233442 34443
Q ss_pred c-CCchHHHHhhhcCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHHCCcCEEEE----
Q 018252 222 A-SASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISL---- 296 (359)
Q Consensus 222 ~-s~S~~~~~~n~~~t~~e~l~~i~~~i~~Ak~~G~~V~~~is~~fg~~~~~r~~~e~l~~~a~~l~~~Gad~I~L---- 296 (359)
+ +.++- ....+|+.. ..+.+.++++.++++|+++.++++ +|.|.+ +.+.+.+.++.+.+++++.|.+
T Consensus 145 lQS~~d~-~L~~i~Rg~--t~~~~~~ai~~l~~~gi~v~~~lI--~GlPge---t~e~~~~t~~~l~~l~~d~i~i~~l~ 216 (302)
T TIGR01212 145 LQTAHDK-TLKKINRGH--DFACYVDAVKRARKRGIKVCSHVI--LGLPGE---DREEMMETAKIVSLLDVDGIKIHPLH 216 (302)
T ss_pred cCcCCHH-HHHHHcCcC--hHHHHHHHHHHHHHcCCEEEEeEE--ECCCCC---CHHHHHHHHHHHHhcCCCEEEEEEEE
Confidence 2 22222 122344321 235567888889999999888776 887754 5688888999999999986663
Q ss_pred --cCC-------CCCC---cHHHHHHHHHHHHHhCCC-c---eEEEEeCCCCCc
Q 018252 297 --GDT-------IGVG---TPGTVVPMLEAVMAVVPV-E---KLAVHLHDTYGQ 334 (359)
Q Consensus 297 --~DT-------~G~~---~P~~v~~lv~~l~~~~p~-~---~L~~H~HNd~GL 334 (359)
++| -|-. +.+++.+.+..+.+.+|. + .+.-|..|+.=+
T Consensus 217 ~~pgT~L~~~~~~g~~~~~~~~e~~~~~~~~l~~l~~~~~i~Rl~~~~~~~~~l 270 (302)
T TIGR01212 217 VVKGTKMAKMYEKGELKTLSLEEYISLACDFLEHLPPEVVIHRISGDAPRETLI 270 (302)
T ss_pred ecCCCHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCCcCeEEEEecCCCCccceE
Confidence 332 1222 235555566666667764 2 233455554433
No 214
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=94.57 E-value=4.5 Score=38.79 Aligned_cols=162 Identities=14% Similarity=0.162 Sum_probs=95.5
Q ss_pred CHHHHHHHHHHHHhCCCCEEEEeccCCCCCcCCCCCHHHHHHHhhhcCCCeEEEEeC----ChHhHHHHHHcCCCEEEEe
Q 018252 146 PTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPVLTP----NLKGFEAAIAAGAKEVAIF 221 (359)
Q Consensus 146 ~~~~k~~ia~~L~~aGv~~IEvG~fvspk~vPq~~D~~ev~~~l~~~~~~~l~~l~~----n~~gie~a~~aGv~~V~i~ 221 (359)
+..+-.++++...+.|...|-+= ..+++.. .+.+. +..+++. +.++++.. ...+++.+.++|++-|.+.
T Consensus 68 ~~~~~~~~A~~~~~~GA~aisvl--te~~~f~--g~~~~-l~~v~~~--v~iPvl~kdfi~~~~qi~~a~~~GAD~VlLi 140 (260)
T PRK00278 68 EDFDPVEIAKAYEAGGAACLSVL--TDERFFQ--GSLEY-LRAARAA--VSLPVLRKDFIIDPYQIYEARAAGADAILLI 140 (260)
T ss_pred CCCCHHHHHHHHHhCCCeEEEEe--cccccCC--CCHHH-HHHHHHh--cCCCEEeeeecCCHHHHHHHHHcCCCEEEEE
Confidence 34466789999999999998551 2222221 12333 3334432 22334433 3357999999999999987
Q ss_pred cCCchHHHHhhhcCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHHCCcCEEEEcC-CC
Q 018252 222 ASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGD-TI 300 (359)
Q Consensus 222 ~s~S~~~~~~n~~~t~~e~l~~i~~~i~~Ak~~G~~V~~~is~~fg~~~~~r~~~e~l~~~a~~l~~~Gad~I~L~D-T~ 300 (359)
...-+ .+.+.+++++|+++|+.+.+.+ ++.+++ +++.++|++.|.+-- +.
T Consensus 141 ~~~l~--------------~~~l~~li~~a~~lGl~~lvev-----------h~~~E~----~~A~~~gadiIgin~rdl 191 (260)
T PRK00278 141 VAALD--------------DEQLKELLDYAHSLGLDVLVEV-----------HDEEEL----ERALKLGAPLIGINNRNL 191 (260)
T ss_pred eccCC--------------HHHHHHHHHHHHHcCCeEEEEe-----------CCHHHH----HHHHHcCCCEEEECCCCc
Confidence 65300 1357788999999999875433 344443 446688999998753 11
Q ss_pred CCCcHHHHHHHHHHHHHhCCC--ceEE-EEeCCCCCcHHHHHHHHHHcCCCEE
Q 018252 301 GVGTPGTVVPMLEAVMAVVPV--EKLA-VHLHDTYGQSLPNILISLQVSPMHA 350 (359)
Q Consensus 301 G~~~P~~v~~lv~~l~~~~p~--~~L~-~H~HNd~GLAlANalaAv~AGa~~I 350 (359)
....|. .+.+..+.+.+|. ..|. -..+ ...++..+.++|++.|
T Consensus 192 ~~~~~d--~~~~~~l~~~~p~~~~vIaegGI~-----t~ed~~~~~~~Gad~v 237 (260)
T PRK00278 192 KTFEVD--LETTERLAPLIPSDRLVVSESGIF-----TPEDLKRLAKAGADAV 237 (260)
T ss_pred ccccCC--HHHHHHHHHhCCCCCEEEEEeCCC-----CHHHHHHHHHcCCCEE
Confidence 122222 2333444444553 1222 1222 3578888899999876
No 215
>TIGR02320 PEP_mutase phosphoenolpyruvate phosphomutase. A closely related enzyme, phosphonopyruvate hydrolase from Variovorax sp. Pal2, is excluded from this model.
Probab=94.53 E-value=0.66 Score=45.32 Aligned_cols=107 Identities=8% Similarity=0.012 Sum_probs=76.6
Q ss_pred CCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHHCCcCEEEEcCCC--------------
Q 018252 235 CSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTI-------------- 300 (359)
Q Consensus 235 ~t~~e~l~~i~~~i~~Ak~~G~~V~~~is~~fg~~~~~r~~~e~l~~~a~~l~~~Gad~I~L~DT~-------------- 300 (359)
.+.+|.++.++.++... .++|. +. .+.+ -++..+.+.++++.++|+.-|+|-|..
T Consensus 61 ~~~~e~~~~~~~I~~a~---~~Pv~------~D-~d~G-g~~~~v~r~V~~l~~aGvaGi~iEDq~~pk~cg~~~~~~~~ 129 (285)
T TIGR02320 61 ASWTQRLDVVEFMFDVT---TKPII------LD-GDTG-GNFEHFRRLVRKLERRGVSAVCIEDKLGLKKNSLFGNDVAQ 129 (285)
T ss_pred CCHHHHHHHHHHHHhhc---CCCEE------Ee-cCCC-CCHHHHHHHHHHHHHcCCeEEEEeccCCCccccccCCCCcc
Confidence 46777777776665433 46653 22 2445 699999999999999999999998875
Q ss_pred CCCcHHHHHHHHHHHHHh-C-CCceEEEE----e-CCCCCcHHHHHHHHHHcCCCEEec
Q 018252 301 GVGTPGTVVPMLEAVMAV-V-PVEKLAVH----L-HDTYGQSLPNILISLQVSPMHAKP 352 (359)
Q Consensus 301 G~~~P~~v~~lv~~l~~~-~-p~~~L~~H----~-HNd~GLAlANalaAv~AGa~~ID~ 352 (359)
.+..+++..+.+++.++. . +++.|-.. . ...+--++.-+.++.+||||.|=.
T Consensus 130 ~l~s~ee~~~kI~Aa~~a~~~~~~~IiARTDa~~~~~~~~eAi~Ra~ay~eAGAD~ifv 188 (285)
T TIGR02320 130 PQASVEEFCGKIRAGKDAQTTEDFMIIARVESLILGKGMEDALKRAEAYAEAGADGIMI 188 (285)
T ss_pred cccCHHHHHHHHHHHHHhccCCCeEEEEecccccccCCHHHHHHHHHHHHHcCCCEEEe
Confidence 356788888888888775 2 33444444 1 123446788899999999998743
No 216
>PRK08599 coproporphyrinogen III oxidase; Provisional
Probab=94.51 E-value=2.2 Score=42.73 Aligned_cols=95 Identities=7% Similarity=-0.010 Sum_probs=63.7
Q ss_pred CeEEEEe-C---ChHhHHHHHHcCCCEEEEecCCchHHHHhhhcCCHHHHHHHHHHHHHHHHhCCCc-EEEEEeeeecCC
Q 018252 195 ARLPVLT-P---NLKGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIP-VRGYVSCVVGCP 269 (359)
Q Consensus 195 ~~l~~l~-~---n~~gie~a~~aGv~~V~i~~s~S~~~~~~n~~~t~~e~l~~i~~~i~~Ak~~G~~-V~~~is~~fg~~ 269 (359)
.++..-+ | +.+.++...++|+.+|.+-+..-.......+|+. ...+.+.++++.+++.|+. +.+.++ +|.|
T Consensus 87 ~eit~e~~p~~l~~e~l~~l~~~G~~rvsiGvqS~~~~~l~~l~r~--~~~~~~~~~i~~l~~~g~~~v~~dli--~GlP 162 (377)
T PRK08599 87 EEFTFEANPGDLTKEKLQVLKDSGVNRISLGVQTFNDELLKKIGRT--HNEEDVYEAIANAKKAGFDNISIDLI--YALP 162 (377)
T ss_pred CEEEEEeCCCCCCHHHHHHHHHcCCCEEEEecccCCHHHHHHcCCC--CCHHHHHHHHHHHHHcCCCcEEEeee--cCCC
Confidence 3555444 2 2356777778999999987644332233345543 2345677888999999986 555555 7777
Q ss_pred CCCCCCHHHHHHHHHHHHHCCcCEEEE
Q 018252 270 VEGAIPPSKVAYVAKELHDMGCFEISL 296 (359)
Q Consensus 270 ~~~r~~~e~l~~~a~~l~~~Gad~I~L 296 (359)
.. +.+.+.+.++.+.+++++.|.+
T Consensus 163 gq---t~~~~~~~l~~~~~l~~~~i~~ 186 (377)
T PRK08599 163 GQ---TIEDFKESLAKALALDIPHYSA 186 (377)
T ss_pred CC---CHHHHHHHHHHHHccCCCEEee
Confidence 54 6778888888889999987654
No 217
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=94.50 E-value=1.8 Score=40.98 Aligned_cols=171 Identities=13% Similarity=0.069 Sum_probs=83.8
Q ss_pred CCHHHHHHHHHHHHhCCCCEEEEeccCC-CCCcC-CCC--CHHHHHHHhhhcCCCeEEEEe-----------CCh-----
Q 018252 145 VPTGVKVELIRRLVSSGLPVVEATSFVS-PKWVP-QLA--DARDVMEAVRDLEGARLPVLT-----------PNL----- 204 (359)
Q Consensus 145 ~~~~~k~~ia~~L~~aGv~~IEvG~fvs-pk~vP-q~~--D~~ev~~~l~~~~~~~l~~l~-----------~n~----- 204 (359)
++.++ .++.+.++|++.||+..... ....+ .+. +..++.+.++ ..++++.+++ ++.
T Consensus 16 ~~~~e---~~~~~~~~G~~~iEl~~~~~~~~~~~~~~~~~~~~~l~~~l~-~~Gl~i~~~~~~~~~~~~~~~~d~~~r~~ 91 (284)
T PRK13210 16 LSWEE---RLVFAKELGFDFVEMSVDESDERLARLDWSKEERLSLVKAIY-ETGVRIPSMCLSGHRRFPFGSRDPATRER 91 (284)
T ss_pred CCHHH---HHHHHHHcCCCeEEEecCCcccccccccCCHHHHHHHHHHHH-HcCCCceEEecccccCcCCCCCCHHHHHH
Confidence 45554 45566689999999974211 10000 111 2233333333 2345554432 111
Q ss_pred ------HhHHHHHHcCCCEEEEecCCchHHHHhhhcCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHH
Q 018252 205 ------KGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSK 278 (359)
Q Consensus 205 ------~gie~a~~aGv~~V~i~~s~S~~~~~~n~~~t~~e~l~~i~~~i~~Ak~~G~~V~~~is~~fg~~~~~r~~~e~ 278 (359)
+-++.|...|++.|.+... ..+.........++..+.+.+++++|+++|+.+.. . .- +...-.+++.
T Consensus 92 ~~~~~~~~i~~a~~lG~~~v~~~~~--~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~l~l--E--~~-~~~~~~~~~~ 164 (284)
T PRK13210 92 ALEIMKKAIRLAQDLGIRTIQLAGY--DVYYEEKSEETRQRFIEGLAWAVEQAAAAQVMLAV--E--IM-DTPFMNSISK 164 (284)
T ss_pred HHHHHHHHHHHHHHhCCCEEEECCc--ccccccccHHHHHHHHHHHHHHHHHHHHhCCEEEE--E--ec-CccccCCHHH
Confidence 1234455679999887421 10000000112456677889999999999987632 2 11 1111245666
Q ss_pred HHHHHHHHHHCCcCEEEEc-CCCCCCcHHHHHHHHHHHHHhCCCceEEEEeCCCC
Q 018252 279 VAYVAKELHDMGCFEISLG-DTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTY 332 (359)
Q Consensus 279 l~~~a~~l~~~Gad~I~L~-DT~G~~~P~~v~~lv~~l~~~~p~~~L~~H~HNd~ 332 (359)
+..+++.+ +-+.+.++ |+. .+.=.. ......++. ..+-...+|.+|..
T Consensus 165 ~~~l~~~v---~~~~~~~~~D~~-h~~~~~-~~~~~~l~~-~~~~i~~vHikD~~ 213 (284)
T PRK13210 165 WKKWDKEI---DSPWLTVYPDVG-NLSAWG-NDVWSELKL-GIDHIAAIHLKDTY 213 (284)
T ss_pred HHHHHHHc---CCCceeEEecCC-hhhhcC-CCHHHHHHH-hcCeEEEEEecccc
Confidence 66666654 44455554 542 221000 112233332 33457889999874
No 218
>TIGR00587 nfo apurinic endonuclease (APN1). All proteins in this family for which functions are known are 5' AP endonculeases that are used in base excision repair and the repair of abasic sites in DNA.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=94.44 E-value=4.3 Score=38.88 Aligned_cols=172 Identities=16% Similarity=0.064 Sum_probs=88.3
Q ss_pred HHHHHHHHhCCCCEEEEeccCCCC-CcCCCC---CHHHHHHHhhhc--CCCeEEEEe--------CChH-----------
Q 018252 151 VELIRRLVSSGLPVVEATSFVSPK-WVPQLA---DARDVMEAVRDL--EGARLPVLT--------PNLK----------- 205 (359)
Q Consensus 151 ~~ia~~L~~aGv~~IEvG~fvspk-~vPq~~---D~~ev~~~l~~~--~~~~l~~l~--------~n~~----------- 205 (359)
.+.++.+.+.|++.+|+-. .+|+ |....- +.+++.+.+.+. .-..+.+.. ++.+
T Consensus 14 ~~a~~~~~~~G~~~~qif~-~~P~~w~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Hapy~iNlas~~~~~r~~sv~~~~~ 92 (274)
T TIGR00587 14 QAAYNRAAEIGATAFMFFL-KSPRWWRRPMLEEEVIDWFKAALETNKNLSQIVLVHAPYLINLASPDEEKEEKSLDVLDE 92 (274)
T ss_pred HHHHHHHHHhCCCEEEEEe-cCccccCCCCCCHHHHHHHHHHHHHcCCCCcceeccCCeeeecCCCCHHHHHHHHHHHHH
Confidence 4577889999999999943 3343 221111 223333333321 111122222 2221
Q ss_pred hHHHHHHcCCCEEEEecCCchHHHHhhhcCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHH
Q 018252 206 GFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKE 285 (359)
Q Consensus 206 gie~a~~aGv~~V~i~~s~S~~~~~~n~~~t~~e~l~~i~~~i~~Ak~~G~~V~~~is~~fg~~~~~r~~~e~l~~~a~~ 285 (359)
.++.|...|++.|.+.... .. ....+++++.+.+.++.+.+....|...|....+.+..--.+++.+.++.+.
T Consensus 93 ~i~~A~~lga~~vv~H~G~-~~------~~~~e~~~~~~~~~l~~l~~~~~~v~l~lEN~~~~~~~l~~~~~el~~ll~~ 165 (274)
T TIGR00587 93 ELKRCELLGIMLYNFHPGS-AL------KCSEEEGLDNLIESLNVVIKETKIVTILLENMAGQGSELGRSFEELAYIIKV 165 (274)
T ss_pred HHHHHHHcCCCEEEECCCC-CC------CCCHHHHHHHHHHHHHHHHhccCCCEEEEEeCCCCCCccCCCHHHHHHHHHh
Confidence 2445555788876664421 11 1234556666666655543322234445543222211112588888888776
Q ss_pred HHHCCcCEEEEcCCCCCCc--------HHHHHHHHHHHHHhCC-CceEEEEeCCCC
Q 018252 286 LHDMGCFEISLGDTIGVGT--------PGTVVPMLEAVMAVVP-VEKLAVHLHDTY 332 (359)
Q Consensus 286 l~~~Gad~I~L~DT~G~~~--------P~~v~~lv~~l~~~~p-~~~L~~H~HNd~ 332 (359)
+.. .+.+.+|--+|.+. ++.+.+++..+.+.++ +....+|+||+.
T Consensus 166 ~~~--~~~lg~~lDt~H~~~~g~~~~~~~~~~~~~~~~~~~~g~~~i~~vHl~Ds~ 219 (274)
T TIGR00587 166 IVD--KRRIGVCLDTCHFFAAGYDITTKAYFEVVKNEFDVVVGFKYLKAIHLNDSK 219 (274)
T ss_pred cCC--CCceEEEEEhhhHHhcCCCcCCHHHHHHHHHHHHHhcCHhheeEEEEEcCc
Confidence 532 13454444333332 6667788887776653 346778999873
No 219
>PRK06852 aldolase; Validated
Probab=94.44 E-value=0.7 Score=45.58 Aligned_cols=131 Identities=12% Similarity=0.009 Sum_probs=85.6
Q ss_pred hHHHHHHcC------CCEEEE--ecCCchHHHHhhhcCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHH
Q 018252 206 GFEAAIAAG------AKEVAI--FASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPS 277 (359)
Q Consensus 206 gie~a~~aG------v~~V~i--~~s~S~~~~~~n~~~t~~e~l~~i~~~i~~Ak~~G~~V~~~is~~fg~~~~~r~~~e 277 (359)
.+|.|++.| ++-|.+ +.. |+. ..+.++.+.++++.|++.|+.+.+ .+...|.......+|+
T Consensus 120 sVeeAvrlG~~~~~~AdAV~v~v~~G-s~~---------E~~ml~~l~~v~~ea~~~GlPll~-~~yprG~~i~~~~~~~ 188 (304)
T PRK06852 120 DVEQVVEFKENSGLNILGVGYTIYLG-SEY---------ESEMLSEAAQIIYEAHKHGLIAVL-WIYPRGKAVKDEKDPH 188 (304)
T ss_pred cHHHHHhcCCccCCCceEEEEEEecC-CHH---------HHHHHHHHHHHHHHHHHhCCcEEE-EeeccCcccCCCccHH
Confidence 488999988 665544 443 332 246788999999999999999754 2223333223346889
Q ss_pred HHHHHHHHHHHCCcCEEEEcCCC--CCCcHHHHHHHHHHHHHhCCCceEEEEeCC--CCCcHHHHHHHHHH-cCCCEEe
Q 018252 278 KVAYVAKELHDMGCFEISLGDTI--GVGTPGTVVPMLEAVMAVVPVEKLAVHLHD--TYGQSLPNILISLQ-VSPMHAK 351 (359)
Q Consensus 278 ~l~~~a~~l~~~Gad~I~L~DT~--G~~~P~~v~~lv~~l~~~~p~~~L~~H~HN--d~GLAlANalaAv~-AGa~~ID 351 (359)
.+...++.+.++|||.|-..=|. |-..|+.+.+.++.. -| +++-+=+=- +.--.+..+..|++ +|+.-|.
T Consensus 189 ~ia~aaRiaaELGADIVKv~y~~~~~~g~~e~f~~vv~~~---g~-vpVviaGG~k~~~~e~L~~v~~ai~~aGa~Gv~ 263 (304)
T PRK06852 189 LIAGAAGVAACLGADFVKVNYPKKEGANPAELFKEAVLAA---GR-TKVVCAGGSSTDPEEFLKQLYEQIHISGASGNA 263 (304)
T ss_pred HHHHHHHHHHHHcCCEEEecCCCcCCCCCHHHHHHHHHhC---CC-CcEEEeCCCCCCHHHHHHHHHHHHHHcCCceee
Confidence 99999999999999988766552 224577777766542 02 333332111 22225777888888 8987654
No 220
>PRK14338 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=94.43 E-value=1.9 Score=44.69 Aligned_cols=145 Identities=20% Similarity=0.293 Sum_probs=84.9
Q ss_pred CCCCHHHHHHHHHHHHhCCCCEEEEecc-CCCCC--cCCCCCHHHHHHHhhhcCCC-eEEEEe--CC---hHhHHHHHHc
Q 018252 143 NTVPTGVKVELIRRLVSSGLPVVEATSF-VSPKW--VPQLADARDVMEAVRDLEGA-RLPVLT--PN---LKGFEAAIAA 213 (359)
Q Consensus 143 ~~~~~~~k~~ia~~L~~aGv~~IEvG~f-vspk~--vPq~~D~~ev~~~l~~~~~~-~l~~l~--~n---~~gie~a~~a 213 (359)
...+.++.++.++.|.+.|++.|.+... ..... .|...+..++++.+.+.++. ++...+ |. .+-++...+.
T Consensus 182 rsr~~e~Il~ei~~l~~~G~keI~l~g~~~~~yG~d~~~~~~l~~Ll~~l~~~~gi~~ir~~~~~p~~i~~ell~~l~~~ 261 (459)
T PRK14338 182 RSRPLAEIVEEVRRIAARGAKEITLLGQIVDSYGHDLPGRPDLADLLEAVHEIPGLERLRFLTSHPAWMTDRLIHAVARL 261 (459)
T ss_pred ccCCHHHHHHHHHHHHHCCCeEEEEeeecCCCcccccCChHHHHHHHHHHHhcCCcceEEEEecChhhcCHHHHHHHhcc
Confidence 3578999999999999999999877541 11000 01112344555555554443 333223 32 2334444443
Q ss_pred --CCCEEEEec-CCchHHHHhhhcCCHHHHHHHHHHHHHHHHhC--CCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHH
Q 018252 214 --GAKEVAIFA-SASEAFSKSNINCSIEDSLVRYRAVAHAAKVL--SIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHD 288 (359)
Q Consensus 214 --Gv~~V~i~~-s~S~~~~~~n~~~t~~e~l~~i~~~i~~Ak~~--G~~V~~~is~~fg~~~~~r~~~e~l~~~a~~l~~ 288 (359)
|+..+++.+ +.|+--.+ .+|+.. ..+.+.++++.+++. |+.+..++. +|.|.+ +.+.+.+.++.+.+
T Consensus 262 ~~~~~~v~lglQSgsd~vLk-~m~R~~--t~e~~~~~i~~lr~~~pgi~i~~d~I--vG~PgE---T~ed~~~ti~~l~~ 333 (459)
T PRK14338 262 PKCCPHINLPVQAGDDEVLK-RMRRGY--TVARYRELIARIREAIPDVSLTTDII--VGHPGE---TEEQFQRTYDLLEE 333 (459)
T ss_pred cccccceecCcccCCHHHHH-hccCCC--CHHHHHHHHHHHHHhCCCCEEEEEEE--EECCCC---CHHHHHHHHHHHHH
Confidence 467777755 44433322 344321 344566777777777 677767776 777765 66677777777777
Q ss_pred CCcCEEE
Q 018252 289 MGCFEIS 295 (359)
Q Consensus 289 ~Gad~I~ 295 (359)
.+.+.+.
T Consensus 334 l~~~~v~ 340 (459)
T PRK14338 334 IRFDKVH 340 (459)
T ss_pred cCCCEeE
Confidence 8877553
No 221
>PRK12858 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=94.42 E-value=1.8 Score=43.28 Aligned_cols=135 Identities=12% Similarity=0.050 Sum_probs=85.3
Q ss_pred hHHHHHHcCCCEEEE--ecCCchHHHHhhhcCCHHHHHHHHHHHHHHHHhCCCcEEEEE-eeeecCCCCCC-----CCHH
Q 018252 206 GFEAAIAAGAKEVAI--FASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYV-SCVVGCPVEGA-----IPPS 277 (359)
Q Consensus 206 gie~a~~aGv~~V~i--~~s~S~~~~~~n~~~t~~e~l~~i~~~i~~Ak~~G~~V~~~i-s~~fg~~~~~r-----~~~e 277 (359)
.++++++.|.+-|.+ +....+.. .. .++.++.+.++.+.|++.|+++.+-+ +...+..+... ..|+
T Consensus 111 sve~a~~~GAdAVk~lv~~~~d~~~-~~-----~~~~~~~l~rv~~ec~~~giPlllE~l~y~~~~~~~~~~~~a~~~p~ 184 (340)
T PRK12858 111 SVRRIKEAGADAVKLLLYYRPDEDD-AI-----NDRKHAFVERVGAECRANDIPFFLEPLTYDGKGSDKKAEEFAKVKPE 184 (340)
T ss_pred cHHHHHHcCCCEEEEEEEeCCCcch-HH-----HHHHHHHHHHHHHHHHHcCCceEEEEeccCCCccccccccccccCHH
Confidence 378999999997655 33211110 00 24567889999999999999975542 22222211112 5789
Q ss_pred HHHHHHHHHHH--CCcCEEEEcCCC------C------CCcHHHHHHHHHHHHHhCCCceEEE-EeCCCCCcHHHHHHHH
Q 018252 278 KVAYVAKELHD--MGCFEISLGDTI------G------VGTPGTVVPMLEAVMAVVPVEKLAV-HLHDTYGQSLPNILIS 342 (359)
Q Consensus 278 ~l~~~a~~l~~--~Gad~I~L~DT~------G------~~~P~~v~~lv~~l~~~~p~~~L~~-H~HNd~GLAlANalaA 342 (359)
.+...++.+.+ +|+|.+-+.=+. | +.+-.+..+.++.+.+..+ +|+-+ =+--+...-+.....|
T Consensus 185 ~V~~a~r~~~~~elGaDvlKve~p~~~~~veg~~~~~~~~~~~~~~~~f~~~~~a~~-~P~vvlsgG~~~~~f~~~l~~A 263 (340)
T PRK12858 185 KVIKTMEEFSKPRYGVDVLKVEVPVDMKFVEGFDGFEEAYTQEEAFKLFREQSDATD-LPFIFLSAGVSPELFRRTLEFA 263 (340)
T ss_pred HHHHHHHHHhhhccCCeEEEeeCCCCcccccccccccccccHHHHHHHHHHHHhhCC-CCEEEECCCCCHHHHHHHHHHH
Confidence 99999999995 999987774332 1 1244555566766666544 23333 2333445567778889
Q ss_pred HHcCC
Q 018252 343 LQVSP 347 (359)
Q Consensus 343 v~AGa 347 (359)
+++|+
T Consensus 264 ~~aGa 268 (340)
T PRK12858 264 CEAGA 268 (340)
T ss_pred HHcCC
Confidence 99999
No 222
>COG1856 Uncharacterized homolog of biotin synthetase [Function unknown]
Probab=94.41 E-value=4.8 Score=38.32 Aligned_cols=193 Identities=14% Similarity=0.056 Sum_probs=128.0
Q ss_pred HHHHHHHHHHHHhCCCCEEEEecc-CCCCCcCCCCCHHHHHHHhhhcCCCeEEEEeC--ChHhHHHHHHcCCCEEEE-ec
Q 018252 147 TGVKVELIRRLVSSGLPVVEATSF-VSPKWVPQLADARDVMEAVRDLEGARLPVLTP--NLKGFEAAIAAGAKEVAI-FA 222 (359)
Q Consensus 147 ~~~k~~ia~~L~~aGv~~IEvG~f-vspk~vPq~~D~~ev~~~l~~~~~~~l~~l~~--n~~gie~a~~aGv~~V~i-~~ 222 (359)
+..-++-...|..-|+..+=+... .+...||- .+..+.+..+++..+..+.+.+- .+.+++...++++|.+.+ |+
T Consensus 41 ~~~l~k~~~el~kkGy~g~llSGGm~srg~VPl-~kf~d~lK~lke~~~l~inaHvGfvdE~~~eklk~~~vdvvsLDfv 119 (275)
T COG1856 41 TKSLLKRCMELEKKGYEGCLLSGGMDSRGKVPL-WKFKDELKALKERTGLLINAHVGFVDESDLEKLKEELVDVVSLDFV 119 (275)
T ss_pred hHHHHHHHHHHHhcCceeEEEeCCcCCCCCccH-HHHHHHHHHHHHhhCeEEEEEeeeccHHHHHHHHHhcCcEEEEeec
Confidence 334445555788899998876432 33334553 33444566666666777777664 467889999999998776 45
Q ss_pred CCchHHHH-hhhcCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHHCCcCEEE---EcC
Q 018252 223 SASEAFSK-SNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEIS---LGD 298 (359)
Q Consensus 223 s~S~~~~~-~n~~~t~~e~l~~i~~~i~~Ak~~G~~V~~~is~~fg~~~~~r~~~e~l~~~a~~l~~~Gad~I~---L~D 298 (359)
+-.+...+ .++.++.+ .+...+++.++.|+.|...|. .|. +.+....|+ +.++.+.+...|.+. |-=
T Consensus 120 gDn~vIk~vy~l~ksv~----dyl~~l~~L~e~~irvvpHit--iGL-~~gki~~e~--kaIdiL~~~~~DalVl~vliP 190 (275)
T COG1856 120 GDNDVIKRVYKLPKSVE----DYLRSLLLLKENGIRVVPHIT--IGL-DFGKIHGEF--KAIDILVNYEPDALVLVVLIP 190 (275)
T ss_pred CChHHHHHHHcCCccHH----HHHHHHHHHHHcCceeceeEE--EEe-ccCcccchH--HHHHHHhcCCCCeEEEEEEec
Confidence 54444322 23344444 455667788889999988876 443 234666665 677788888888654 445
Q ss_pred CCCCC-------cHHHHHHHHHHHHHhCCCceEEEEeCCCCCcHH-HHHHHHHHcCCCEE
Q 018252 299 TIGVG-------TPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSL-PNILISLQVSPMHA 350 (359)
Q Consensus 299 T~G~~-------~P~~v~~lv~~l~~~~p~~~L~~H~HNd~GLAl-ANalaAv~AGa~~I 350 (359)
|.|.- +|+++.++++..|+.+|+ ++.+-|---+|--- --=-.|+.+|++.|
T Consensus 191 tpGtkm~~~~pp~~eE~i~v~~~AR~~f~~-pv~iGCmrP~Ge~rvk~d~~av~~gVd~I 249 (275)
T COG1856 191 TPGTKMGNSPPPPVEEAIKVVKYARKKFPN-PVSIGCMRPRGEWRVKLDKEAVLAGVDRI 249 (275)
T ss_pred CCchhccCCCCcCHHHHHHHHHHHHHhCCC-CeeEeecCcCchhHHHHHHHHHHcCCcee
Confidence 66632 367777888888889998 88888888777653 23346889999987
No 223
>TIGR03822 AblA_like_2 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in Rhodopseudomonas, Caulobacter crescentus, Bradyrhizobium, etc.
Probab=94.38 E-value=5.8 Score=39.16 Aligned_cols=159 Identities=13% Similarity=0.077 Sum_probs=99.8
Q ss_pred CCCCHHHHHHHHHHHHh-CCCCEEEEeccCCCCCcCCC---CCHHHHHHHhhhcCCCeEEEE-e------CC---hHhHH
Q 018252 143 NTVPTGVKVELIRRLVS-SGLPVVEATSFVSPKWVPQL---ADARDVMEAVRDLEGARLPVL-T------PN---LKGFE 208 (359)
Q Consensus 143 ~~~~~~~k~~ia~~L~~-aGv~~IEvG~fvspk~vPq~---~D~~ev~~~l~~~~~~~l~~l-~------~n---~~gie 208 (359)
..++.++..++++.|.+ .|+..|-++.. . |-+ .+..++++.++..+.++...+ + |. .+-++
T Consensus 117 ~~l~~~e~~~~i~~i~~~~~I~~VilSGG-D----Pl~~~~~~L~~ll~~l~~i~~v~~iri~Tr~~v~~p~rit~ell~ 191 (321)
T TIGR03822 117 GVLSPAELDAAFAYIADHPEIWEVILTGG-D----PLVLSPRRLGDIMARLAAIDHVKIVRFHTRVPVADPARVTPALIA 191 (321)
T ss_pred CcCCHHHHHHHHHHHHhCCCccEEEEeCC-C----cccCCHHHHHHHHHHHHhCCCccEEEEeCCCcccChhhcCHHHHH
Confidence 34677888888998875 48888777642 1 122 234456666666554432222 2 21 23355
Q ss_pred HHHHcCCCEEEEecCCchHHHHhhhcCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHH
Q 018252 209 AAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHD 288 (359)
Q Consensus 209 ~a~~aGv~~V~i~~s~S~~~~~~n~~~t~~e~l~~i~~~i~~Ak~~G~~V~~~is~~fg~~~~~r~~~e~l~~~a~~l~~ 288 (359)
...++|.. +.+.+.... ..+..+.+.++++.+++.|+.+...... .. +--.+.+.+.++.+.+.+
T Consensus 192 ~L~~~g~~-v~i~l~~~h----------~~el~~~~~~ai~~L~~~Gi~v~~q~vL-l~---gvNd~~~~l~~l~~~l~~ 256 (321)
T TIGR03822 192 ALKTSGKT-VYVALHANH----------ARELTAEARAACARLIDAGIPMVSQSVL-LR---GVNDDPETLAALMRAFVE 256 (321)
T ss_pred HHHHcCCc-EEEEecCCC----------hhhcCHHHHHHHHHHHHcCCEEEEEeeE-eC---CCCCCHHHHHHHHHHHHh
Confidence 55667843 445443221 1233466778889999999987543221 11 112578889999999999
Q ss_pred CCcC--EEEEcCCC-CC----CcHHHHHHHHHHHHHhCCC
Q 018252 289 MGCF--EISLGDTI-GV----GTPGTVVPMLEAVMAVVPV 321 (359)
Q Consensus 289 ~Gad--~I~L~DT~-G~----~~P~~v~~lv~~l~~~~p~ 321 (359)
+|+. .+...|.+ |. ..+++..++++.+++.+++
T Consensus 257 ~gv~pyyl~~~~p~~g~~~f~~~~~~~~~i~~~l~~~~~g 296 (321)
T TIGR03822 257 CRIKPYYLHHLDLAPGTAHFRVTIEEGQALVRALRGRISG 296 (321)
T ss_pred cCCeeEEEEecCCCCCcccccCcHHHHHHHHHHHHHhCCC
Confidence 9986 46677877 43 3477889999999998876
No 224
>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.
Probab=94.37 E-value=1.1 Score=44.38 Aligned_cols=80 Identities=14% Similarity=0.089 Sum_probs=57.3
Q ss_pred CCHHHHHHHHHHHHHCCcCEEE--E-c-----CCCCCCcHHHHHHHHHHHHHhCCCceEEEEeCCCCCcHHHHHHHHHHc
Q 018252 274 IPPSKVAYVAKELHDMGCFEIS--L-G-----DTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQV 345 (359)
Q Consensus 274 ~~~e~l~~~a~~l~~~Gad~I~--L-~-----DT~G~~~P~~v~~lv~~l~~~~p~~~L~~H~HNd~GLAlANalaAv~A 345 (359)
.+++.+.++++.+.++|+|.|. + | +-.|...++.+.++++++++... +||.+-.--++..-..-+.++.++
T Consensus 109 ~~~~~~~~~a~~~~~~gad~iElN~s~~~~~~~~~g~~~~~~~~eiv~~v~~~~~-iPv~vKl~p~~~~~~~~a~~l~~~ 187 (325)
T cd04739 109 VSAGGWVDYARQIEEAGADALELNIYALPTDPDISGAEVEQRYLDILRAVKSAVT-IPVAVKLSPFFSALAHMAKQLDAA 187 (325)
T ss_pred CCHHHHHHHHHHHHhcCCCEEEEeCCCCCCCCCcccchHHHHHHHHHHHHHhccC-CCEEEEcCCCccCHHHHHHHHHHc
Confidence 4678889999999999998554 3 2 33444456778899999998764 566666554555455566678899
Q ss_pred CCCEEecee
Q 018252 346 SPMHAKPCF 354 (359)
Q Consensus 346 Ga~~ID~tl 354 (359)
||+.|..+=
T Consensus 188 Gadgi~~~n 196 (325)
T cd04739 188 GADGLVLFN 196 (325)
T ss_pred CCCeEEEEc
Confidence 999987643
No 225
>PRK05904 coproporphyrinogen III oxidase; Provisional
Probab=94.37 E-value=2.6 Score=42.27 Aligned_cols=106 Identities=7% Similarity=0.050 Sum_probs=68.6
Q ss_pred HHHHHHhhhc--CCCeEEEEe-C---ChHhHHHHHHcCCCEEEEecCCchHHHHhhhcCCHHHHHHHHHHHHHHHHhCCC
Q 018252 183 RDVMEAVRDL--EGARLPVLT-P---NLKGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSI 256 (359)
Q Consensus 183 ~ev~~~l~~~--~~~~l~~l~-~---n~~gie~a~~aGv~~V~i~~s~S~~~~~~n~~~t~~e~l~~i~~~i~~Ak~~G~ 256 (359)
+++++.+++. ++.++..-+ | +.+.++...++|+.+|.+-+..-.-.....+|+. ...+.+.++++.+++.|+
T Consensus 76 ~~ll~~i~~~~~~~~eitiE~nP~~lt~e~l~~lk~~G~nrisiGvQS~~d~vL~~l~R~--~~~~~~~~ai~~lr~~G~ 153 (353)
T PRK05904 76 DILLSTIKPYVDNNCEFTIECNPELITQSQINLLKKNKVNRISLGVQSMNNNILKQLNRT--HTIQDSKEAINLLHKNGI 153 (353)
T ss_pred HHHHHHHHHhcCCCCeEEEEeccCcCCHHHHHHHHHcCCCEEEEecccCCHHHHHHcCCC--CCHHHHHHHHHHHHHcCC
Confidence 3344444432 345555544 3 2356778888999999987643322333345653 234566788889999998
Q ss_pred c-EEEEEeeeecCCCCCCCCHHHHHHHHHHHHHCCcCEEE
Q 018252 257 P-VRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEIS 295 (359)
Q Consensus 257 ~-V~~~is~~fg~~~~~r~~~e~l~~~a~~l~~~Gad~I~ 295 (359)
. +.+.++ +|.|. -+.+.+.+.++.+.+.+++.|.
T Consensus 154 ~~v~~dlI--~GlPg---qt~e~~~~tl~~~~~l~p~~is 188 (353)
T PRK05904 154 YNISCDFL--YCLPI---LKLKDLDEVFNFILKHKINHIS 188 (353)
T ss_pred CcEEEEEe--ecCCC---CCHHHHHHHHHHHHhcCCCEEE
Confidence 6 766665 77774 3667788888888889988654
No 226
>PF04055 Radical_SAM: Radical SAM superfamily; InterPro: IPR007197 Radical SAM proteins catalyze diverse reactions, including unusual methylations, isomerization, sulphur insertion, ring formation, anaerobic oxidation and protein radical formation. Evidence exists that these proteins generate a radical species by reductive cleavage of S:-adenosylmethionine (SAM) through an unusual Fe-S centre [, ].; GO: 0003824 catalytic activity, 0051536 iron-sulfur cluster binding; PDB: 2A5H_D 3T7V_A 3C8F_A 3CB8_A 2FB2_A 2FB3_A 3CIX_A 3IIX_A 3IIZ_A 3CIW_A ....
Probab=94.36 E-value=1.3 Score=37.11 Aligned_cols=132 Identities=18% Similarity=0.174 Sum_probs=82.3
Q ss_pred CCCCCHHHHHHHHHHH-HhCCCCEEEEeccCCCCCcCCC-CCHHHHHHHhhhc--CCCeEEEEeC----ChHhHHHHHHc
Q 018252 142 KNTVPTGVKVELIRRL-VSSGLPVVEATSFVSPKWVPQL-ADARDVMEAVRDL--EGARLPVLTP----NLKGFEAAIAA 213 (359)
Q Consensus 142 ~~~~~~~~k~~ia~~L-~~aGv~~IEvG~fvspk~vPq~-~D~~ev~~~l~~~--~~~~l~~l~~----n~~gie~a~~a 213 (359)
...++.++.++.++.+ .+.|+..|..|.. .| .+ .+..+.+..+... .+.++...+. +.+.++...+.
T Consensus 25 ~~~~~~e~i~~~~~~~~~~~~~~~i~~~~g-ep----~~~~~~~~~~~~~~~~~~~~~~i~~~t~~~~~~~~~l~~l~~~ 99 (166)
T PF04055_consen 25 PREMSPEEILEEIKELKQDKGVKEIFFGGG-EP----TLHPDFIELLELLRKIKKRGIRISINTNGTLLDEELLDELKKL 99 (166)
T ss_dssp CEECHHHHHHHHHHHHHHHTTHEEEEEESS-TG----GGSCHHHHHHHHHHHCTCTTEEEEEEEESTTHCHHHHHHHHHT
T ss_pred cccCCHHHHHHHHHHHhHhcCCcEEEEeec-CC----CcchhHHHHHHHHHHhhccccceeeeccccchhHHHHHHHHhc
Confidence 4568899999999999 6999888888752 22 11 2333444444443 5666666654 24678888899
Q ss_pred CCCEEEEecCCchHH-HHhhhcCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHH
Q 018252 214 GAKEVAIFASASEAF-SKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKE 285 (359)
Q Consensus 214 Gv~~V~i~~s~S~~~-~~~n~~~t~~e~l~~i~~~i~~Ak~~G~~V~~~is~~fg~~~~~r~~~e~l~~~a~~ 285 (359)
|.+.+.+.+....-. ....++. ....+++.+.++.+++.|++....+. ++.|. .+.+++.++++.
T Consensus 100 ~~~~i~~~l~s~~~~~~~~~~~~--~~~~~~~~~~l~~l~~~g~~~~~~~i--~~~~~---~~~~e~~~~~~~ 165 (166)
T PF04055_consen 100 GVDRIRISLESLDEESVLRIINR--GKSFERVLEALERLKEAGIPRVIIFI--VGLPG---ENDEEIEETIRF 165 (166)
T ss_dssp TCSEEEEEEBSSSHHHHHHHHSS--TSHHHHHHHHHHHHHHTTSETEEEEE--EEBTT---TSHHHHHHHHHH
T ss_pred CccEEecccccCCHHHhhhhhcC--CCCHHHHHHHHHHHHHcCCCcEEEEE--EEeCC---CCHHHHHHHhCc
Confidence 999988866433332 3333431 23456677888889999987322332 44443 355666666653
No 227
>PRK09989 hypothetical protein; Provisional
Probab=94.27 E-value=1.6 Score=41.15 Aligned_cols=164 Identities=10% Similarity=0.016 Sum_probs=84.2
Q ss_pred HHHHHHHHHhCCCCEEEEeccCCCCCcCCCCCHHHHHHHhhhcCCCeEEEEe----------------CC-----hHhHH
Q 018252 150 KVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPVLT----------------PN-----LKGFE 208 (359)
Q Consensus 150 k~~ia~~L~~aGv~~IEvG~fvspk~vPq~~D~~ev~~~l~~~~~~~l~~l~----------------~n-----~~gie 208 (359)
-.+.++.+.++|++.||+..+.. .+.+++.+.+++ .+++++++. +. .+.++
T Consensus 17 l~~~l~~~~~~Gfd~VEl~~~~~-------~~~~~~~~~l~~-~Gl~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 88 (258)
T PRK09989 17 FIERFAAARKAGFDAVEFLFPYD-------YSTLQIQKQLEQ-NHLTLALFNTAPGDINAGEWGLSALPGREHEARADID 88 (258)
T ss_pred HHHHHHHHHHcCCCEEEECCccc-------CCHHHHHHHHHH-cCCcEEEeccCCCccCCCCCcccCCCccHHHHHHHHH
Confidence 34677888999999999965211 245666666653 233333322 10 12244
Q ss_pred ----HHHHcCCCEEEEecCCchHHHHhhhcCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHH
Q 018252 209 ----AAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAK 284 (359)
Q Consensus 209 ----~a~~aGv~~V~i~~s~S~~~~~~n~~~t~~e~l~~i~~~i~~Ak~~G~~V~~~is~~fg~~~~~r~~~e~l~~~a~ 284 (359)
.|.+.|.+.|.++.+..+.... .....+...+.++.+.+.|++.|+.+...-......+...-.+.+...++++
T Consensus 89 ~~i~~A~~lg~~~v~v~~g~~~~~~~--~~~~~~~~~~~l~~l~~~a~~~gv~l~lE~l~~~~~~~~~~~~~~~~~~ll~ 166 (258)
T PRK09989 89 LALEYALALNCEQVHVMAGVVPAGED--AERYRAVFIDNLRYAADRFAPHGKRILVEALSPGVKPHYLFSSQYQALAIVE 166 (258)
T ss_pred HHHHHHHHhCcCEEEECccCCCCCCC--HHHHHHHHHHHHHHHHHHHHhcCCEEEEEeCCCCCCCCCccCCHHHHHHHHH
Confidence 4456799988775442110000 0011244667888889999999987643221000001001124444444544
Q ss_pred HHHHCCcCEE-EEcCCCCCCcHH-HHHHHHHHHHHhCCCceEEEEeCC
Q 018252 285 ELHDMGCFEI-SLGDTIGVGTPG-TVVPMLEAVMAVVPVEKLAVHLHD 330 (359)
Q Consensus 285 ~l~~~Gad~I-~L~DT~G~~~P~-~v~~lv~~l~~~~p~~~L~~H~HN 330 (359)
+.+.+.+ -+-|+.-...+. ++.++++...+ ....+|.+|
T Consensus 167 ---~v~~~~v~l~lD~~h~~~~~~~~~~~i~~~~~----ri~hvHi~D 207 (258)
T PRK09989 167 ---EVARDNVFIQLDTFHAQKVDGNLTHLIRDYAG----KYAHVQIAG 207 (258)
T ss_pred ---HcCCCCeEEEeehHhHHHcCCCHHHHHHHhhh----hEEEEEECC
Confidence 4444444 456776554442 33444443332 356788875
No 228
>PRK05799 coproporphyrinogen III oxidase; Provisional
Probab=94.26 E-value=2.6 Score=42.19 Aligned_cols=95 Identities=11% Similarity=0.099 Sum_probs=64.4
Q ss_pred CCeEEEEe-C---ChHhHHHHHHcCCCEEEEec-CCchHHHHhhhcCCHHHHHHHHHHHHHHHHhCCCc-EEEEEeeeec
Q 018252 194 GARLPVLT-P---NLKGFEAAIAAGAKEVAIFA-SASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIP-VRGYVSCVVG 267 (359)
Q Consensus 194 ~~~l~~l~-~---n~~gie~a~~aGv~~V~i~~-s~S~~~~~~n~~~t~~e~l~~i~~~i~~Ak~~G~~-V~~~is~~fg 267 (359)
+.++..-+ | +.+-++...++|+.+|.+-+ +.++.. ...+|+. ...+.+.++++.+++.|++ +.+.++ +|
T Consensus 85 ~~eitie~~p~~~t~e~l~~l~~~G~~rvsiGvqS~~d~~-L~~l~R~--~~~~~~~~ai~~l~~~g~~~v~~dli--~G 159 (374)
T PRK05799 85 DLEFTVEGNPGTFTEEKLKILKSMGVNRLSIGLQAWQNSL-LKYLGRI--HTFEEFLENYKLARKLGFNNINVDLM--FG 159 (374)
T ss_pred CCEEEEEeCCCcCCHHHHHHHHHcCCCEEEEECccCCHHH-HHHcCCC--CCHHHHHHHHHHHHHcCCCcEEEEee--cC
Confidence 45555444 3 23567788889999988866 333332 2345542 1244566788888999986 666665 77
Q ss_pred CCCCCCCCHHHHHHHHHHHHHCCcCEEEE
Q 018252 268 CPVEGAIPPSKVAYVAKELHDMGCFEISL 296 (359)
Q Consensus 268 ~~~~~r~~~e~l~~~a~~l~~~Gad~I~L 296 (359)
.|.. +.+.+.+.++.+.+.|++.|.+
T Consensus 160 lPgq---t~e~~~~~l~~~~~l~~~~is~ 185 (374)
T PRK05799 160 LPNQ---TLEDWKETLEKVVELNPEHISC 185 (374)
T ss_pred CCCC---CHHHHHHHHHHHHhcCCCEEEE
Confidence 7654 6788888999999999998765
No 229
>PRK11320 prpB 2-methylisocitrate lyase; Provisional
Probab=94.25 E-value=2.1 Score=42.04 Aligned_cols=153 Identities=17% Similarity=0.132 Sum_probs=93.2
Q ss_pred HHHHHhCCCCEEEEecc--C-CCCCcCC--CCCHHHHHHHhhhcC-CCeEEEEeC------Ch----HhHHHHHHcCCCE
Q 018252 154 IRRLVSSGLPVVEATSF--V-SPKWVPQ--LADARDVMEAVRDLE-GARLPVLTP------NL----KGFEAAIAAGAKE 217 (359)
Q Consensus 154 a~~L~~aGv~~IEvG~f--v-spk~vPq--~~D~~ev~~~l~~~~-~~~l~~l~~------n~----~gie~a~~aGv~~ 217 (359)
++...++|++.|=++++ + +..-.|- +-+.++++..++.+. .+.+.+++. +. +-+++..++|+--
T Consensus 30 Ari~e~~Gf~ai~~Sg~~~a~~~lG~PD~g~l~~~e~~~~~~~I~~~~~iPviaD~d~GyG~~~~v~r~V~~~~~aGaag 109 (292)
T PRK11320 30 ALLAERAGFKAIYLSGGGVAAASLGLPDLGITTLDDVLIDVRRITDACDLPLLVDIDTGFGGAFNIARTVKSMIKAGAAA 109 (292)
T ss_pred HHHHHHcCCCEEEeCHHHHHhHhcCCCCCCCCCHHHHHHHHHHHHhccCCCEEEECCCCCCCHHHHHHHHHHHHHcCCeE
Confidence 45677789999977653 2 1112333 235577777777542 334455553 22 2356677799999
Q ss_pred EEEecCCchHHHHhhhc---CCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHHCCcCEE
Q 018252 218 VAIFASASEAFSKSNIN---CSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEI 294 (359)
Q Consensus 218 V~i~~s~S~~~~~~n~~---~t~~e~l~~i~~~i~~Ak~~G~~V~~~is~~fg~~~~~r~~~e~l~~~a~~l~~~Gad~I 294 (359)
|+|-..+.+-..-+.-+ .+.++..++++.+++..++-++-+.+-. .++ .....++.++-+++..++|||.|
T Consensus 110 i~IEDq~~pK~cg~~~~~~lv~~ee~~~kI~Aa~~a~~~~d~~IiART-Da~-----~~~g~deAI~Ra~aY~eAGAD~i 183 (292)
T PRK11320 110 VHIEDQVGAKRCGHRPNKEIVSQEEMVDRIKAAVDARTDPDFVIMART-DAL-----AVEGLDAAIERAQAYVEAGADMI 183 (292)
T ss_pred EEEecCCCccccCCCCCCcccCHHHHHHHHHHHHHhccCCCeEEEEec-Ccc-----cccCHHHHHHHHHHHHHcCCCEE
Confidence 99977654322221112 3678888888877665542222221111 111 12347788888899999999999
Q ss_pred EEcCCCCCCcHHHHHHHHHHH
Q 018252 295 SLGDTIGVGTPGTVVPMLEAV 315 (359)
Q Consensus 295 ~L~DT~G~~~P~~v~~lv~~l 315 (359)
.+. |.-++++++++.+.+
T Consensus 184 fi~---~~~~~~~i~~~~~~~ 201 (292)
T PRK11320 184 FPE---AMTELEMYRRFADAV 201 (292)
T ss_pred Eec---CCCCHHHHHHHHHhc
Confidence 985 566788888887765
No 230
>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase. This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.
Probab=94.23 E-value=2.3 Score=42.47 Aligned_cols=96 Identities=15% Similarity=0.162 Sum_probs=66.8
Q ss_pred HHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHHCCcC--EEEE--cCCCCCCcHHHHHH--HHHHHHHhC
Q 018252 246 AVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCF--EISL--GDTIGVGTPGTVVP--MLEAVMAVV 319 (359)
Q Consensus 246 ~~i~~Ak~~G~~V~~~is~~fg~~~~~r~~~e~l~~~a~~l~~~Gad--~I~L--~DT~G~~~P~~v~~--lv~~l~~~~ 319 (359)
++++++.+.|.+|. |+ . |..+.+++...++.+.+.|.. .|.| |= .++-+|..-.+ .+..+++.+
T Consensus 124 pLL~~~A~~gkPvi--lS----t---Gmatl~Ei~~Av~~i~~~G~~~~~i~llhC~-s~YP~~~~~~nL~~I~~Lk~~f 193 (329)
T TIGR03569 124 PLLKKIARFGKPVI--LS----T---GMATLEEIEAAVGVLRDAGTPDSNITLLHCT-TEYPAPFEDVNLNAMDTLKEAF 193 (329)
T ss_pred HHHHHHHhcCCcEE--EE----C---CCCCHHHHHHHHHHHHHcCCCcCcEEEEEEC-CCCCCCcccCCHHHHHHHHHHh
Confidence 45566666788873 22 1 346889999999999988975 2555 64 45555555443 367888888
Q ss_pred CCceEEEEeCCCCCcHHHHHHHHHHcCCCEEeceee
Q 018252 320 PVEKLAVHLHDTYGQSLPNILISLQVSPMHAKPCFT 355 (359)
Q Consensus 320 p~~~L~~H~HNd~GLAlANalaAv~AGa~~ID~tl~ 355 (359)
+ .++++=-|- +|..-+++|+..||++|+-=++
T Consensus 194 ~-~pVG~SdHt---~G~~~~~aAvalGA~iIEkH~t 225 (329)
T TIGR03569 194 D-LPVGYSDHT---LGIEAPIAAVALGATVIEKHFT 225 (329)
T ss_pred C-CCEEECCCC---ccHHHHHHHHHcCCCEEEeCCC
Confidence 6 789985554 3467789999999999985443
No 231
>cd01320 ADA Adenosine deaminase (ADA) is a monomeric zinc dependent enzyme which catalyzes the irreversible hydrolytic deamination of both adenosine, as well as desoxyadenosine, to ammonia and inosine or desoxyinosine, respectively. ADA plays an important role in the purine pathway. Low, as well as high levels of ADA activity have been linked to several diseases.
Probab=94.20 E-value=2.8 Score=40.84 Aligned_cols=133 Identities=14% Similarity=0.034 Sum_probs=79.3
Q ss_pred hHHHHHHcCCCEEEEecCCchHHHHhhhcCCHHHHHHHHHHHHHHH-HhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHH
Q 018252 206 GFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAA-KVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAK 284 (359)
Q Consensus 206 gie~a~~aGv~~V~i~~s~S~~~~~~n~~~t~~e~l~~i~~~i~~A-k~~G~~V~~~is~~fg~~~~~r~~~e~l~~~a~ 284 (359)
.++.+++.|+..+.+... +.. ....|.+.++.++.+.+.++.+ ++.|+.++..++ +. ...+++...+..+
T Consensus 78 ~~~e~~~~Gvt~~E~~~~--p~~-~~~~~~~~~~~~~~~~~ai~~~~~~~gi~~~l~~~--~~----~~~~~~~~~~~~~ 148 (325)
T cd01320 78 YLEDAAADGVVYAEIRFS--PQL-HTRRGLSFDEVVEAVLRGLDEAEAEFGIKARLILC--GL----RHLSPESAQETLE 148 (325)
T ss_pred HHHHHHHcCCEEEEEEeC--chh-hccCCCCHHHHHHHHHHHHHHHHHhcCCeEEEEEE--ec----CCCCHHHHHHHHH
Confidence 456777789876655432 111 1235678888888877776665 456777665444 11 1134566666666
Q ss_pred HHHHCCcC---EEEEcCCCCCCcHHHHHHHHHHHHHhCCCceEEEEeCCCCCcHHHHHHHHHH-cCCCEEe
Q 018252 285 ELHDMGCF---EISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQ-VSPMHAK 351 (359)
Q Consensus 285 ~l~~~Gad---~I~L~DT~G~~~P~~v~~lv~~l~~~~p~~~L~~H~HNd~GLAlANalaAv~-AGa~~ID 351 (359)
.+.+.+.+ .+.++..-....+..+..+++..++. +.++.+|+.-+.+ ..+...|++ +|+++|.
T Consensus 149 ~~~~~~~~~vvg~~l~~~~~~~~~~~~~~~~~~A~~~--g~~v~~H~~E~~~--~~~~~~a~~~~g~~~i~ 215 (325)
T cd01320 149 LALKYRDKGVVGFDLAGDEVGFPPEKFVRAFQRAREA--GLRLTAHAGEAGG--PESVRDALDLLGAERIG 215 (325)
T ss_pred HHHhccCCCEEEeecCCCCCCCCHHHHHHHHHHHHHC--CCceEEeCCCCCC--HHHHHHHHHHcCCcccc
Confidence 66555444 33443222234677888888777764 4678888876643 234556676 7877653
No 232
>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage. Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to
Probab=94.10 E-value=0.73 Score=43.77 Aligned_cols=106 Identities=16% Similarity=0.197 Sum_probs=75.5
Q ss_pred CCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHHCCcCEEEEcCCCC-----------CC
Q 018252 235 CSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIG-----------VG 303 (359)
Q Consensus 235 ~t~~e~l~~i~~~i~~Ak~~G~~V~~~is~~fg~~~~~r~~~e~l~~~a~~l~~~Gad~I~L~DT~G-----------~~ 303 (359)
.+.++.+..++.+.+.+ .+++.+.+. +| -.+++.+.+.++.+.+.|+..|.|-|..+ ..
T Consensus 52 ~~~~e~~~~~~~I~~~~---~~Pv~~D~~--~G-----~g~~~~~~~~v~~~~~~G~~gv~iED~~~~k~~g~~~~~~~~ 121 (243)
T cd00377 52 LTLDEVLAAVRRIARAV---DLPVIADAD--TG-----YGNALNVARTVRELEEAGAAGIHIEDQVGPKKCGHHGGKVLV 121 (243)
T ss_pred CCHHHHHHHHHHHHhhc---cCCEEEEcC--CC-----CCCHHHHHHHHHHHHHcCCEEEEEecCCCCccccCCCCCeec
Confidence 35677777777766554 455544333 22 22668889999999999999999988763 56
Q ss_pred cHHHHHHHHHHHHHhCC---CceEEEE-----e-CCCCCcHHHHHHHHHHcCCCEE
Q 018252 304 TPGTVVPMLEAVMAVVP---VEKLAVH-----L-HDTYGQSLPNILISLQVSPMHA 350 (359)
Q Consensus 304 ~P~~v~~lv~~l~~~~p---~~~L~~H-----~-HNd~GLAlANalaAv~AGa~~I 350 (359)
++++..+.++++++... +..|-.- . .+.+--++.-+.++.++|||.|
T Consensus 122 ~~ee~~~ki~aa~~a~~~~~~~~IiARTDa~~~~~~~~~eai~Ra~ay~~AGAD~v 177 (243)
T cd00377 122 PIEEFVAKIKAARDARDDLPDFVIIARTDALLAGEEGLDEAIERAKAYAEAGADGI 177 (243)
T ss_pred CHHHHHHHHHHHHHHHhccCCeEEEEEcCchhccCCCHHHHHHHHHHHHHcCCCEE
Confidence 78888999988888654 3333322 1 2456668999999999999976
No 233
>PLN02334 ribulose-phosphate 3-epimerase
Probab=94.05 E-value=5.2 Score=37.33 Aligned_cols=172 Identities=14% Similarity=0.105 Sum_probs=100.2
Q ss_pred HHHHHHHHHHHhCCCCEEEEeccCCCCCcCCCCCHHHHHHHhhhcCCC--eEEEEeCCh-HhHHHHHHcCCCEEEEecCC
Q 018252 148 GVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGA--RLPVLTPNL-KGFEAAIAAGAKEVAIFASA 224 (359)
Q Consensus 148 ~~k~~ia~~L~~aGv~~IEvG~fvspk~vPq~~D~~ev~~~l~~~~~~--~l~~l~~n~-~gie~a~~aGv~~V~i~~s~ 224 (359)
..-.+.++.+.+.|++.|.+-.-. ..++|...--.++.+.+++..+. .+..++.+. .-++.+.++|++.|.+....
T Consensus 20 ~~l~~~l~~~~~~g~~~ihld~~d-~~f~~~~~~g~~~~~~l~~~~~~~~~vhlmv~~p~d~~~~~~~~gad~v~vH~~q 98 (229)
T PLN02334 20 ANLAEEAKRVLDAGADWLHVDVMD-GHFVPNLTIGPPVVKALRKHTDAPLDCHLMVTNPEDYVPDFAKAGASIFTFHIEQ 98 (229)
T ss_pred HHHHHHHHHHHHcCCCEEEEeccc-CCcCCccccCHHHHHHHHhcCCCcEEEEeccCCHHHHHHHHHHcCCCEEEEeecc
Confidence 355677888999999999884311 01123322111344555554443 333344444 55888899999998554331
Q ss_pred -chHHHHhhhcCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHHCC-cCEEEE----cC
Q 018252 225 -SEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMG-CFEISL----GD 298 (359)
Q Consensus 225 -S~~~~~~n~~~t~~e~l~~i~~~i~~Ak~~G~~V~~~is~~fg~~~~~r~~~e~l~~~a~~l~~~G-ad~I~L----~D 298 (359)
. -+.....++.+++.|+.+...+ + ..++. +.++.+.+.| +|.|.+ +.
T Consensus 99 ~~---------------~d~~~~~~~~i~~~g~~iGls~-----~----~~t~~---~~~~~~~~~~~~Dyi~~~~v~pg 151 (229)
T PLN02334 99 AS---------------TIHLHRLIQQIKSAGMKAGVVL-----N----PGTPV---EAVEPVVEKGLVDMVLVMSVEPG 151 (229)
T ss_pred cc---------------chhHHHHHHHHHHCCCeEEEEE-----C----CCCCH---HHHHHHHhccCCCEEEEEEEecC
Confidence 1 1123466777888888663322 1 21222 2344455553 887633 33
Q ss_pred CCCCCcHHHHHHHHHHHHHhCCCceEEEEeCCCCCcHHHHHHHHHHcCCCEEe
Q 018252 299 TIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQVSPMHAK 351 (359)
Q Consensus 299 T~G~~~P~~v~~lv~~l~~~~p~~~L~~H~HNd~GLAlANalaAv~AGa~~ID 351 (359)
+.|-..|....+.++.+++..+..+|.+ +=|.-..|+-..+++||+.|=
T Consensus 152 ~~~~~~~~~~~~~i~~~~~~~~~~~I~a----~GGI~~e~i~~l~~aGad~vv 200 (229)
T PLN02334 152 FGGQSFIPSMMDKVRALRKKYPELDIEV----DGGVGPSTIDKAAEAGANVIV 200 (229)
T ss_pred CCccccCHHHHHHHHHHHHhCCCCcEEE----eCCCCHHHHHHHHHcCCCEEE
Confidence 3443355566666777887766555554 446778899999999999874
No 234
>COG2513 PrpB PEP phosphonomutase and related enzymes [Carbohydrate transport and metabolism]
Probab=94.03 E-value=2.7 Score=41.08 Aligned_cols=155 Identities=15% Similarity=0.123 Sum_probs=97.8
Q ss_pred HHHHHHhCCCCEEEEecc--CCCCCcCC--CCCHHHHHHHhhhc-CCCeEEEEeCC---------h-HhHHHHHHcCCCE
Q 018252 153 LIRRLVSSGLPVVEATSF--VSPKWVPQ--LADARDVMEAVRDL-EGARLPVLTPN---------L-KGFEAAIAAGAKE 217 (359)
Q Consensus 153 ia~~L~~aGv~~IEvG~f--vspk~vPq--~~D~~ev~~~l~~~-~~~~l~~l~~n---------~-~gie~a~~aGv~~ 217 (359)
-++.+.++|++.|=.++. +..-..|- ....++++..++++ ..+.+.+++.- . +-+..+.++|+--
T Consensus 30 sA~la~~aGF~al~~sg~~vA~slG~pD~~~~t~~e~~~~vrrI~~a~~lPv~vD~dtGfG~~~nvartV~~~~~aG~ag 109 (289)
T COG2513 30 SALLAERAGFKALYLSGAGVAASLGLPDLGITTLDEVLADARRITDAVDLPVLVDIDTGFGEALNVARTVRELEQAGAAG 109 (289)
T ss_pred HHHHHHHcCCeEEEeccHHHHHhcCCCccccccHHHHHHHHHHHHhhcCCceEEeccCCCCcHHHHHHHHHHHHHcCcce
Confidence 356778899999988752 11111222 23467788888765 34566666641 1 3356677789999
Q ss_pred EEEecCCchHHHHhhhc---CCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHHCCcCEE
Q 018252 218 VAIFASASEAFSKSNIN---CSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEI 294 (359)
Q Consensus 218 V~i~~s~S~~~~~~n~~---~t~~e~l~~i~~~i~~Ak~~G~~V~~~is~~fg~~~~~r~~~e~l~~~a~~l~~~Gad~I 294 (359)
+++-...-+-..-+.-| .+.+++.++++.+++.+++....+.+- +..|+.. -.+...+-++...++|+|.|
T Consensus 110 i~iEDq~~pk~cgh~~gk~l~~~~e~v~rIkAa~~a~~~~~fvi~AR-Tda~~~~-----~ld~AI~Ra~AY~eAGAD~i 183 (289)
T COG2513 110 IHIEDQVGPKRCGHLPGKELVSIDEMVDRIKAAVEARRDPDFVIIAR-TDALLVE-----GLDDAIERAQAYVEAGADAI 183 (289)
T ss_pred eeeeecccchhcCCCCCCCcCCHHHHHHHHHHHHHhccCCCeEEEee-hHHHHhc-----cHHHHHHHHHHHHHcCCcEE
Confidence 99876543322211112 367899999998888887644433211 1122211 15677777888889999999
Q ss_pred EEcCCCCCCcHHHHHHHHHHHH
Q 018252 295 SLGDTIGVGTPGTVVPMLEAVM 316 (359)
Q Consensus 295 ~L~DT~G~~~P~~v~~lv~~l~ 316 (359)
... |...+++++++.++++
T Consensus 184 f~~---al~~~e~i~~f~~av~ 202 (289)
T COG2513 184 FPE---ALTDLEEIRAFAEAVP 202 (289)
T ss_pred ccc---cCCCHHHHHHHHHhcC
Confidence 854 6667888888888877
No 235
>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.
Probab=93.98 E-value=1.7 Score=37.68 Aligned_cols=128 Identities=14% Similarity=0.095 Sum_probs=75.3
Q ss_pred HhHHHHHHcCCCEEEEecCCchHHHHhhhcCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHH
Q 018252 205 KGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAK 284 (359)
Q Consensus 205 ~gie~a~~aGv~~V~i~~s~S~~~~~~n~~~t~~e~l~~i~~~i~~Ak~~G~~V~~~is~~fg~~~~~r~~~e~l~~~a~ 284 (359)
+.++...+.|++.+.+-.............. +.+....+..+..+.+.+. .. ...+.+...++
T Consensus 16 ~~~~~~~~~G~~~v~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~---~~-----~~~~~~~~~a~ 78 (200)
T cd04722 16 ELAKAAAEAGADAIIVGTRSSDPEEAETDDK---------EVLKEVAAETDLPLGVQLA---IN-----DAAAAVDIAAA 78 (200)
T ss_pred HHHHHHHcCCCCEEEEeeEEECcccCCCccc---------cHHHHHHhhcCCcEEEEEc---cC-----CchhhhhHHHH
Confidence 4566666778887776543222111111110 1122223344566544442 11 12233334477
Q ss_pred HHHHCCcCEEEEcCCCCCCcHHHHHHHHHHHHHhCCCceEEEEeCCCCCcHHHHHHHHHHcCCCEEece
Q 018252 285 ELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQVSPMHAKPC 353 (359)
Q Consensus 285 ~l~~~Gad~I~L~DT~G~~~P~~v~~lv~~l~~~~p~~~L~~H~HNd~GLAlANalaAv~AGa~~ID~t 353 (359)
.+.++|+|.|.|....+.. |....++++.+++.+|+.++.+=.|.......+ .+.+.|++.|...
T Consensus 79 ~~~~~g~d~v~l~~~~~~~-~~~~~~~~~~i~~~~~~~~v~~~~~~~~~~~~~---~~~~~g~d~i~~~ 143 (200)
T cd04722 79 AARAAGADGVEIHGAVGYL-AREDLELIRELREAVPDVKVVVKLSPTGELAAA---AAEEAGVDEVGLG 143 (200)
T ss_pred HHHHcCCCEEEEeccCCcH-HHHHHHHHHHHHHhcCCceEEEEECCCCccchh---hHHHcCCCEEEEc
Confidence 8899999999999888764 888999999999988666666666554443322 1578899998653
No 236
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....
Probab=93.97 E-value=2.5 Score=40.68 Aligned_cols=107 Identities=16% Similarity=0.164 Sum_probs=76.7
Q ss_pred HHHHHHcCCCEEEEecCCchHHHHhhhcCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHH
Q 018252 207 FEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKEL 286 (359)
Q Consensus 207 ie~a~~aGv~~V~i~~s~S~~~~~~n~~~t~~e~l~~i~~~i~~Ak~~G~~V~~~is~~fg~~~~~r~~~e~l~~~a~~l 286 (359)
++..++.|++.+.+.-+++|.+ ..|.+|-.+.++.+++.++. ..+|.+.+. ..+.+..+++++.+
T Consensus 28 i~~l~~~Gv~gl~~~GstGE~~-----~Lt~~Er~~l~~~~~~~~~~-~~~vi~gv~---------~~st~~~i~~a~~a 92 (289)
T PF00701_consen 28 IDFLIEAGVDGLVVLGSTGEFY-----SLTDEERKELLEIVVEAAAG-RVPVIAGVG---------ANSTEEAIELARHA 92 (289)
T ss_dssp HHHHHHTTSSEEEESSTTTTGG-----GS-HHHHHHHHHHHHHHHTT-SSEEEEEEE---------SSSHHHHHHHHHHH
T ss_pred HHHHHHcCCCEEEECCCCcccc-----cCCHHHHHHHHHHHHHHccC-ceEEEecCc---------chhHHHHHHHHHHH
Confidence 5566778999999988888865 45677777767766766643 355544333 35788999999999
Q ss_pred HHCCcCEEE-EcCCCCCCcHHHHHHHHHHHHHhCCCceEEEEeC
Q 018252 287 HDMGCFEIS-LGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLH 329 (359)
Q Consensus 287 ~~~Gad~I~-L~DT~G~~~P~~v~~lv~~l~~~~p~~~L~~H~H 329 (359)
.++|+|.+. ++=.....+++++.+.++.+.+.. +++|-++-+
T Consensus 93 ~~~Gad~v~v~~P~~~~~s~~~l~~y~~~ia~~~-~~pi~iYn~ 135 (289)
T PF00701_consen 93 QDAGADAVLVIPPYYFKPSQEELIDYFRAIADAT-DLPIIIYNN 135 (289)
T ss_dssp HHTT-SEEEEEESTSSSCCHHHHHHHHHHHHHHS-SSEEEEEEB
T ss_pred hhcCceEEEEeccccccchhhHHHHHHHHHHhhc-CCCEEEEEC
Confidence 999999764 445566788999999999999764 357766544
No 237
>COG2876 AroA 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase [Amino acid transport and metabolism]
Probab=93.95 E-value=2.6 Score=40.89 Aligned_cols=204 Identities=15% Similarity=0.077 Sum_probs=123.7
Q ss_pred CCccEEEeCC---CcccCCCC----CC-CCCHHHHHHHHHHHHhCCCCEEEEecc---CCCCCcCCCCC-HHHHHHHhhh
Q 018252 124 PRFVKIVEVG---PRDGLQNE----KN-TVPTGVKVELIRRLVSSGLPVVEATSF---VSPKWVPQLAD-ARDVMEAVRD 191 (359)
Q Consensus 124 p~~V~I~D~T---LRDG~Q~~----~~-~~~~~~k~~ia~~L~~aGv~~IEvG~f---vspk~vPq~~D-~~ev~~~l~~ 191 (359)
.+.+.|+|+. .+.|.... +. .=+.++.+.+++.+.++|.+.+--|-| .||..+-.+.. .-.++..++.
T Consensus 27 ~~~~tivd~~~~~~g~~~~~~viAGPCsvEs~E~i~~~A~~vk~~Ga~~lRGgafKPRTSPYsFQGlge~gL~~l~~a~~ 106 (286)
T COG2876 27 KKEDTIVDVGDVVIGEGRALRVIAGPCSVESEEQVRETAESVKAAGAKALRGGAFKPRTSPYSFQGLGEEGLKLLKRAAD 106 (286)
T ss_pred cccceeeccccceecCCcceEEEecCcccCCHHHHHHHHHHHHHcchhhccCCcCCCCCCcccccccCHHHHHHHHHHHH
Confidence 3455677765 44443211 12 235788999999999999999988864 45543322222 1122333334
Q ss_pred cCCCeEEEEeCChHhHHHHHHcCCCEEEEecCCchHHHHhhhcCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCC
Q 018252 192 LEGARLPVLTPNLKGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVE 271 (359)
Q Consensus 192 ~~~~~l~~l~~n~~gie~a~~aGv~~V~i~~s~S~~~~~~n~~~t~~e~l~~i~~~i~~Ak~~G~~V~~~is~~fg~~~~ 271 (359)
..+.-+..=+.+.+++|.+.+. +|.+++-. -..+++ ++++.+-..+.+|-. + .+
T Consensus 107 ~~Gl~vvtEvm~~~~~e~~~~y-~DilqvGA-------------RNMQNF----~LLke~G~~~kPvLL-------K-Rg 160 (286)
T COG2876 107 ETGLPVVTEVMDVRDVEAAAEY-ADILQVGA-------------RNMQNF----ALLKEVGRQNKPVLL-------K-RG 160 (286)
T ss_pred HcCCeeEEEecCHHHHHHHHhh-hhHHHhcc-------------cchhhh----HHHHHhcccCCCeEE-------e-cC
Confidence 4555555555688999988774 44443321 111222 344444555666621 1 11
Q ss_pred CCCCHHHHHHHHHHHHHCCcCEEEEcC----CCCCCcHHHHH-HHHHHHHHh--CCCceEEE-EeCCCCCcHHHHHHHHH
Q 018252 272 GAIPPSKVAYVAKELHDMGCFEISLGD----TIGVGTPGTVV-PMLEAVMAV--VPVEKLAV-HLHDTYGQSLPNILISL 343 (359)
Q Consensus 272 ~r~~~e~l~~~a~~l~~~Gad~I~L~D----T~G~~~P~~v~-~lv~~l~~~--~p~~~L~~-H~HNd~GLAlANalaAv 343 (359)
--.+.++.+..++-+...|...|.||. |.-..|+...- .-|..+|+. +| +.+.. |.-+..-+=..-+.||+
T Consensus 161 ~~aTieEwL~AAEYI~s~GN~~vILCERGIRtfe~~TRntLDi~aV~~~kq~THLP-VivDpSH~~Grr~lv~pla~AA~ 239 (286)
T COG2876 161 LSATIEEWLNAAEYILSHGNGNVILCERGIRTFEKATRNTLDISAVPILKQETHLP-VIVDPSHATGRRDLVEPLAKAAI 239 (286)
T ss_pred ccccHHHHHHHHHHHHhCCCCcEEEEecccccccccccceechHHHHHHHhhcCCC-EEECCCCcccchhhHHHHHHHHH
Confidence 136889999999999999999999986 34444444332 223445543 34 22332 88888888899999999
Q ss_pred HcCCCEEecee
Q 018252 344 QVSPMHAKPCF 354 (359)
Q Consensus 344 ~AGa~~ID~tl 354 (359)
.+||+.+-..+
T Consensus 240 AaGAdglmiEV 250 (286)
T COG2876 240 AAGADGLMIEV 250 (286)
T ss_pred hccCCeeEEEe
Confidence 99999876543
No 238
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=93.93 E-value=2.2 Score=42.56 Aligned_cols=137 Identities=18% Similarity=0.085 Sum_probs=84.5
Q ss_pred HHHHHHcCCCEEEEecC--------CchHHHH--hhhcCCHHHHHHHHHHHHHHHHhC-CCc--EEEEEeeeecCCCCCC
Q 018252 207 FEAAIAAGAKEVAIFAS--------ASEAFSK--SNINCSIEDSLVRYRAVAHAAKVL-SIP--VRGYVSCVVGCPVEGA 273 (359)
Q Consensus 207 ie~a~~aGv~~V~i~~s--------~S~~~~~--~n~~~t~~e~l~~i~~~i~~Ak~~-G~~--V~~~is~~fg~~~~~r 273 (359)
.++|.++|.|-|.+... .|+.+++ ..+|-+.++-.+.+.++++.+|+. |.+ |..-++.. . ...+.
T Consensus 143 A~~a~~aGfDgVeih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~aIR~~vG~d~~v~iRi~~~-D-~~~~g 220 (353)
T cd02930 143 AALAREAGYDGVEIMGSEGYLINQFLAPRTNKRTDEWGGSFENRMRFPVEIVRAVRAAVGEDFIIIYRLSML-D-LVEGG 220 (353)
T ss_pred HHHHHHcCCCEEEEecccchHHHHhcCCccCCCcCccCCCHHHHhHHHHHHHHHHHHHcCCCceEEEEeccc-c-cCCCC
Confidence 45667789999888542 1443332 245667777777778888888774 543 33334311 0 01124
Q ss_pred CCHHHHHHHHHHHHHCCcCEEEEcCCCCCC---c-------H-HHHHHHHHHHHHhCCCceEEEEeCCCCCcHHHHHHHH
Q 018252 274 IPPSKVAYVAKELHDMGCFEISLGDTIGVG---T-------P-GTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILIS 342 (359)
Q Consensus 274 ~~~e~l~~~a~~l~~~Gad~I~L~DT~G~~---~-------P-~~v~~lv~~l~~~~p~~~L~~H~HNd~GLAlANalaA 342 (359)
.++++..++++.+.++|+|-|.+ |.|.. + | ....++.+.+++.++ ++|..-.--+ ....+..+
T Consensus 221 ~~~~e~~~i~~~Le~~G~d~i~v--s~g~~e~~~~~~~~~~~~~~~~~~~~~ik~~v~-iPVi~~G~i~---~~~~a~~~ 294 (353)
T cd02930 221 STWEEVVALAKALEAAGADILNT--GIGWHEARVPTIATSVPRGAFAWATAKLKRAVD-IPVIASNRIN---TPEVAERL 294 (353)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEe--CCCcCCCCCccccccCCchhhHHHHHHHHHhCC-CCEEEcCCCC---CHHHHHHH
Confidence 68899999999999999999887 23321 1 1 123455677888775 4665533211 24667788
Q ss_pred HHcC-CCEEe
Q 018252 343 LQVS-PMHAK 351 (359)
Q Consensus 343 v~AG-a~~ID 351 (359)
++.| +|.|-
T Consensus 295 i~~g~~D~V~ 304 (353)
T cd02930 295 LADGDADMVS 304 (353)
T ss_pred HHCCCCChhH
Confidence 8877 77654
No 239
>TIGR00089 RNA modification enzyme, MiaB family. This subfamily is aparrently a part of a larger superfamily of enzymes utilizing both a 4Fe4S cluster and S-adenosyl methionine (SAM) to initiate radical reactions. MiaB acts on a particular isoprenylated Adenine base of certain tRNAs causing thiolation at an aromatic carbon, and probably also transferring a methyl grouyp from SAM to the thiol. The particular substrate of the three other clades is unknown but may be very closely related.
Probab=93.92 E-value=4 Score=41.70 Aligned_cols=146 Identities=14% Similarity=0.173 Sum_probs=89.1
Q ss_pred CCCCHHHHHHHHHHHHhCCCCEEEEec--c-CCCCCcCCCCCHHHHHHHhhhcCCCe---EEEEeCC---hHhHHHHHHc
Q 018252 143 NTVPTGVKVELIRRLVSSGLPVVEATS--F-VSPKWVPQLADARDVMEAVRDLEGAR---LPVLTPN---LKGFEAAIAA 213 (359)
Q Consensus 143 ~~~~~~~k~~ia~~L~~aGv~~IEvG~--f-vspk~vPq~~D~~ev~~~l~~~~~~~---l~~l~~n---~~gie~a~~a 213 (359)
...+.+..++-++.|.+.|++.|-+.. + .............++++.+...++.. +..+-|. .+-++...++
T Consensus 166 r~r~~e~Vv~Ei~~l~~~g~~ei~l~~~~~~~yg~d~~~~~~l~~Ll~~l~~~~g~~~i~~~~~~p~~i~~ell~~m~~~ 245 (429)
T TIGR00089 166 RSRPPEDILEEVKELVSKGVKEIVLLGQNVGAYGKDLKGETNLADLLRELSKIDGIERIRFGSSHPDDVTDDLIELIAEN 245 (429)
T ss_pred CCCCHHHHHHHHHHHHHCCCceEEEEeeccccccCCCCCCcCHHHHHHHHhcCCCCCEEEECCCChhhcCHHHHHHHHhC
Confidence 457899999999999999999987653 1 11000000123455666665554432 2222232 2345556666
Q ss_pred C--CCEEEEec-CCchHHHHhhhcCCHHHHHHHHHHHHHHHHhCC--CcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHH
Q 018252 214 G--AKEVAIFA-SASEAFSKSNINCSIEDSLVRYRAVAHAAKVLS--IPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHD 288 (359)
Q Consensus 214 G--v~~V~i~~-s~S~~~~~~n~~~t~~e~l~~i~~~i~~Ak~~G--~~V~~~is~~fg~~~~~r~~~e~l~~~a~~l~~ 288 (359)
| ...+++-+ +.|+--.+ .+|+.. ..+.+.++++.++++| +.+.+++. +|.|.+ +++.+.+.++.+.+
T Consensus 246 ~~~~~~l~igiES~s~~vLk-~m~R~~--~~~~~~~~i~~lr~~~~~i~i~~~~I--vG~PgE---T~ed~~~tl~~i~~ 317 (429)
T TIGR00089 246 PKVCKHLHLPVQSGSDRILK-RMNRKY--TREEYLDIVEKIRAKIPDAAITTDII--VGFPGE---TEEDFEETLDLVEE 317 (429)
T ss_pred CCccCceeeccccCChHHHH-hCCCCC--CHHHHHHHHHHHHHHCCCCEEEeeEE--EECCCC---CHHHHHHHHHHHHh
Confidence 4 77888754 55554333 355532 3456678888888888 66666665 887766 56777777777778
Q ss_pred CCcCEEEE
Q 018252 289 MGCFEISL 296 (359)
Q Consensus 289 ~Gad~I~L 296 (359)
.+.+.+.+
T Consensus 318 ~~~~~~~~ 325 (429)
T TIGR00089 318 VKFDKLHS 325 (429)
T ss_pred cCCCEeec
Confidence 88776553
No 240
>PRK14332 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=93.91 E-value=3.2 Score=42.99 Aligned_cols=141 Identities=12% Similarity=0.122 Sum_probs=82.5
Q ss_pred CCCCHHHHHHHHHHHHhCCCCEEEEec--c-CCCCCcCCCCCHHHHHHHhhhcCCC-eEEEEeCCh-----HhHHHHHHc
Q 018252 143 NTVPTGVKVELIRRLVSSGLPVVEATS--F-VSPKWVPQLADARDVMEAVRDLEGA-RLPVLTPNL-----KGFEAAIAA 213 (359)
Q Consensus 143 ~~~~~~~k~~ia~~L~~aGv~~IEvG~--f-vspk~vPq~~D~~ev~~~l~~~~~~-~l~~l~~n~-----~gie~a~~a 213 (359)
...+.+..++-++.|.+.|++.|-+.. + ...+ ...+..++++.+.+.++. ++...+.+. +-++...++
T Consensus 181 rsr~~e~Iv~Ei~~l~~~G~kei~l~~~~~~~y~~---~~~~l~~Ll~~l~~~~~~~~ir~~~~~p~~~~~ell~~m~~~ 257 (449)
T PRK14332 181 RSRDPKSIVREIQDLQEKGIRQVTLLGQNVNSYKE---QSTDFAGLIQMLLDETTIERIRFTSPHPKDFPDHLLSLMAKN 257 (449)
T ss_pred ccCCHHHHHHHHHHHHHCCCeEEEEecccCCcccC---CcccHHHHHHHHhcCCCcceEEEECCCcccCCHHHHHHHHhC
Confidence 456899999999999999999887653 1 1111 012334444444333332 333333221 234555566
Q ss_pred C--CCEEEEec-CCchHHHHhhhcCCHHHHHHHHHHHHHHHHhC--CCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHH
Q 018252 214 G--AKEVAIFA-SASEAFSKSNINCSIEDSLVRYRAVAHAAKVL--SIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHD 288 (359)
Q Consensus 214 G--v~~V~i~~-s~S~~~~~~n~~~t~~e~l~~i~~~i~~Ak~~--G~~V~~~is~~fg~~~~~r~~~e~l~~~a~~l~~ 288 (359)
| .+.+++.+ +.|+--.+ .+|+.. ..+.+.++++.+++. |+.+..++. +|.|.+ +.+.+.+.++.+.+
T Consensus 258 ~~~~~~l~lgvQSgsd~vLk-~m~R~~--t~~~~~~~i~~lr~~~p~i~i~td~I--vGfPgE---T~edf~~tl~~v~~ 329 (449)
T PRK14332 258 PRFCPNIHLPLQAGNTRVLE-EMKRSY--SKEEFLDVVKEIRNIVPDVGITTDII--VGFPNE---TEEEFEDTLAVVRE 329 (449)
T ss_pred CCccceEEECCCcCCHHHHH-hhCCCC--CHHHHHHHHHHHHHhCCCCEEEEEEE--eeCCCC---CHHHHHHHHHHHHh
Confidence 6 67888865 45544333 455432 234556777777776 566666665 787766 55666667777777
Q ss_pred CCcCEE
Q 018252 289 MGCFEI 294 (359)
Q Consensus 289 ~Gad~I 294 (359)
.+.+.+
T Consensus 330 l~~~~~ 335 (449)
T PRK14332 330 VQFDMA 335 (449)
T ss_pred CCCCEE
Confidence 777754
No 241
>COG0535 Predicted Fe-S oxidoreductases [General function prediction only]
Probab=93.91 E-value=3.6 Score=39.67 Aligned_cols=138 Identities=22% Similarity=0.232 Sum_probs=90.3
Q ss_pred CCCCHHHHHHHHHHHHhCC-CCEEEEeccCCCCCcCCC-CCHHHHHHHhhhcCCCeEEEEeCCh-----HhHHHHHHcCC
Q 018252 143 NTVPTGVKVELIRRLVSSG-LPVVEATSFVSPKWVPQL-ADARDVMEAVRDLEGARLPVLTPNL-----KGFEAAIAAGA 215 (359)
Q Consensus 143 ~~~~~~~k~~ia~~L~~aG-v~~IEvG~fvspk~vPq~-~D~~ev~~~l~~~~~~~l~~l~~n~-----~gie~a~~aGv 215 (359)
..+++++..++...+.+.| +..+-++.. . |-+ .|..++.+.+++..+..+ .+..|. .-++...++|+
T Consensus 46 ~el~~~~~~~~~~~~~~~g~~~~v~~~gG-E----Pll~~d~~ei~~~~~~~~~~~~-~~~TnG~~~~~~~~~~l~~~g~ 119 (347)
T COG0535 46 GELSTEEDLRVIDELAELGEIPVVIFTGG-E----PLLRPDLLEIVEYARKKGGIRV-SLSTNGTLLTEEVLEKLKEAGL 119 (347)
T ss_pred cccCHHHHHHHHHHHHHcCCeeEEEEeCC-C----ccccccHHHHHHHHhhcCCeEE-EEeCCCccCCHHHHHHHHhcCC
Confidence 5678888889999999999 666666542 1 222 255566666654434433 444442 56777778899
Q ss_pred CEEEEecCCch--HHHHhhhcCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHHCCcCE
Q 018252 216 KEVAIFASASE--AFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFE 293 (359)
Q Consensus 216 ~~V~i~~s~S~--~~~~~n~~~t~~e~l~~i~~~i~~Ak~~G~~V~~~is~~fg~~~~~r~~~e~l~~~a~~l~~~Gad~ 293 (359)
+.|.+.+...+ .|.. .-| ...++++..+.++.+++.|+.+..++.. ++.+.+.+.++++.+.+.|++.
T Consensus 120 ~~v~iSid~~~~e~hd~-~rg--~~g~~~~~~~~i~~~~~~g~~~~~~~~v-------~~~n~~~l~~~~~~~~~~g~~~ 189 (347)
T COG0535 120 DYVSISLDGLDPETHDP-IRG--VKGVFKRAVEAIKNLKEAGILVVINTTV-------TKINYDELPEIADLAAELGVDE 189 (347)
T ss_pred cEEEEEecCCChhhhhh-hcC--CCcHHHHHHHHHHHHHHcCCeeeEEEEE-------ecCcHHHHHHHHHHHHHcCCCE
Confidence 99998765433 2222 222 2345777788888999999864433331 2567888999999999999875
Q ss_pred EEE
Q 018252 294 ISL 296 (359)
Q Consensus 294 I~L 296 (359)
+.+
T Consensus 190 ~~~ 192 (347)
T COG0535 190 LNV 192 (347)
T ss_pred EEE
Confidence 444
No 242
>PRK14334 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=93.87 E-value=2.6 Score=43.33 Aligned_cols=143 Identities=12% Similarity=0.100 Sum_probs=85.8
Q ss_pred CCCHHHHHHHHHHHHhCCCCEEEEec-----c-CCCCCcCCCCCHHHHHHHhhhcC--CCeEEEEeCC---hHhHHHHHH
Q 018252 144 TVPTGVKVELIRRLVSSGLPVVEATS-----F-VSPKWVPQLADARDVMEAVRDLE--GARLPVLTPN---LKGFEAAIA 212 (359)
Q Consensus 144 ~~~~~~k~~ia~~L~~aGv~~IEvG~-----f-vspk~vPq~~D~~ev~~~l~~~~--~~~l~~l~~n---~~gie~a~~ 212 (359)
..+.++.++-++.|.+.|++.|-+.. + ..+ |...+..++++.+.... .+++...-|. .+-++...+
T Consensus 166 sr~~e~Iv~Ei~~l~~~G~keI~l~g~~~~~yG~d~---~~~~~~~~Ll~~l~~~~i~~ir~~~~~p~~i~~ell~~l~~ 242 (440)
T PRK14334 166 SRHPDLILRELELLKAAGVQEVTLLGQNVNSYGVDQ---PGFPSFAELLRLVGASGIPRVKFTTSHPMNFTDDVIAAMAE 242 (440)
T ss_pred cCCHHHHHHHHHHHHHCCCeEEEEEeccccccccCC---CCcCCHHHHHHHHHhcCCcEEEEccCCcccCCHHHHHHHHh
Confidence 46889999999999999999887642 1 111 11224556667665442 2333333242 234555555
Q ss_pred c--CCCEEEEec-CCchHHHHhhhcCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHHC
Q 018252 213 A--GAKEVAIFA-SASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDM 289 (359)
Q Consensus 213 a--Gv~~V~i~~-s~S~~~~~~n~~~t~~e~l~~i~~~i~~Ak~~G~~V~~~is~~fg~~~~~r~~~e~l~~~a~~l~~~ 289 (359)
. |...+++.+ +.|+.-. ..+|+.. ..+.+.++++.+++.|..+.......+|.|.+ +.+.+.+.++.+.++
T Consensus 243 ~~~g~~~l~igvQSgs~~vL-k~m~R~~--~~~~~~~~v~~lr~~~~~i~i~~d~IvG~PgE---t~ed~~~tl~~i~~l 316 (440)
T PRK14334 243 TPAVCEYIHLPVQSGSDRVL-RRMAREY--RREKYLERIAEIREALPDVVLSTDIIVGFPGE---TEEDFQETLSLYDEV 316 (440)
T ss_pred cCcCCCeEEeccccCCHHHH-HHhCCCC--CHHHHHHHHHHHHHhCCCcEEEEeEEEECCCC---CHHHHHHHHHHHHhc
Confidence 3 578888865 4444433 2344422 23456677888888876644333445888865 666777777777778
Q ss_pred CcCEEE
Q 018252 290 GCFEIS 295 (359)
Q Consensus 290 Gad~I~ 295 (359)
+.+.+.
T Consensus 317 ~~~~i~ 322 (440)
T PRK14334 317 GYDSAY 322 (440)
T ss_pred CCCEee
Confidence 877543
No 243
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=93.80 E-value=1.6 Score=43.20 Aligned_cols=137 Identities=18% Similarity=0.111 Sum_probs=86.9
Q ss_pred HHHHHHcCCCEEEEecC--------CchHHHH--hhhcCCHHHHHHHHHHHHHHHHhC-C--CcEEEEEeeeecCCCCCC
Q 018252 207 FEAAIAAGAKEVAIFAS--------ASEAFSK--SNINCSIEDSLVRYRAVAHAAKVL-S--IPVRGYVSCVVGCPVEGA 273 (359)
Q Consensus 207 ie~a~~aGv~~V~i~~s--------~S~~~~~--~n~~~t~~e~l~~i~~~i~~Ak~~-G--~~V~~~is~~fg~~~~~r 273 (359)
.+++.++|.|.|.+... .|+..++ ..+|-+.++-.+-..++++..|+. | +.+.+-++..-.. ..-
T Consensus 155 A~ra~~aGfDgVeih~a~gyLl~qFlsp~~N~R~D~yGGslenR~rf~~EiI~aIR~avG~d~~v~vris~~~~~--~~g 232 (338)
T cd04733 155 ARLAQEAGFDGVQIHAAHGYLLSQFLSPLTNKRTDEYGGSLENRARLLLEIYDAIRAAVGPGFPVGIKLNSADFQ--RGG 232 (338)
T ss_pred HHHHHHcCCCEEEEchhhhhHHHHhcCCcCCCCCccCCCCHHHHHHHHHHHHHHHHHHcCCCCeEEEEEcHHHcC--CCC
Confidence 34667789999888655 3555443 346778887777778888888765 4 4454444421111 123
Q ss_pred CCHHHHHHHHHHHHHCCcCEEEEcCCCCCCc---------------HHHHHHHHHHHHHhCCCceEEE-EeCCCCCcHHH
Q 018252 274 IPPSKVAYVAKELHDMGCFEISLGDTIGVGT---------------PGTVVPMLEAVMAVVPVEKLAV-HLHDTYGQSLP 337 (359)
Q Consensus 274 ~~~e~l~~~a~~l~~~Gad~I~L~DT~G~~~---------------P~~v~~lv~~l~~~~p~~~L~~-H~HNd~GLAlA 337 (359)
.++++..++++.+.++|+|-|.+.. |... +.-..++.+.++++++ ++|.. -.. ....
T Consensus 233 ~~~eea~~ia~~Le~~Gvd~iev~~--g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~v~-iPVi~~G~i----~t~~ 305 (338)
T cd04733 233 FTEEDALEVVEALEEAGVDLVELSG--GTYESPAMAGAKKESTIAREAYFLEFAEKIRKVTK-TPLMVTGGF----RTRA 305 (338)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEecC--CCCCCccccccccCCccccchhhHHHHHHHHHHcC-CCEEEeCCC----CCHH
Confidence 5788999999999999999888632 2111 1112466777888765 44433 222 2457
Q ss_pred HHHHHHHcC-CCEEec
Q 018252 338 NILISLQVS-PMHAKP 352 (359)
Q Consensus 338 NalaAv~AG-a~~ID~ 352 (359)
.+..+++.| ||.|-.
T Consensus 306 ~a~~~l~~g~aD~V~l 321 (338)
T cd04733 306 AMEQALASGAVDGIGL 321 (338)
T ss_pred HHHHHHHcCCCCeeee
Confidence 788889887 787754
No 244
>COG0269 SgbH 3-hexulose-6-phosphate synthase and related proteins [Carbohydrate transport and metabolism]
Probab=93.78 E-value=1.4 Score=41.40 Aligned_cols=172 Identities=17% Similarity=0.132 Sum_probs=108.9
Q ss_pred CCCCCCCCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcCCCCCHHHHHHHhh-hcCCCeEEEEeCCh----HhHHHHHHc
Q 018252 139 QNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVR-DLEGARLPVLTPNL----KGFEAAIAA 213 (359)
Q Consensus 139 Q~~~~~~~~~~k~~ia~~L~~aGv~~IEvG~fvspk~vPq~~D~~ev~~~l~-~~~~~~l~~l~~n~----~gie~a~~a 213 (359)
|..=-..+.++-+++++.+.+. ++.||+|-+--.+ ...+. .+.++ ..|+..+++=.-.. -..+.|.++
T Consensus 7 QvALD~~~l~~Ai~~a~~v~~~-~diiEvGTpLik~-----eG~~a-V~~lr~~~pd~~IvAD~Kt~D~G~~e~~ma~~a 79 (217)
T COG0269 7 QVALDLLDLEEAIEIAEEVADY-VDIIEVGTPLIKA-----EGMRA-VRALRELFPDKIIVADLKTADAGAIEARMAFEA 79 (217)
T ss_pred EeeecccCHHHHHHHHHHhhhc-ceEEEeCcHHHHH-----hhHHH-HHHHHHHCCCCeEEeeeeecchhHHHHHHHHHc
Confidence 4433457889999999999999 9999999642110 11223 34444 34777665544322 246789999
Q ss_pred CCCEEEEecCCchHHHHhhhcCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHHCCcCE
Q 018252 214 GAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFE 293 (359)
Q Consensus 214 Gv~~V~i~~s~S~~~~~~n~~~t~~e~l~~i~~~i~~Ak~~G~~V~~~is~~fg~~~~~r~~~e~l~~~a~~l~~~Gad~ 293 (359)
|.+.+.+...+. .+.+..+++.|++.|..+...+.. ..+|+. ..+.+.++|++.
T Consensus 80 GAd~~tV~g~A~---------------~~TI~~~i~~A~~~~~~v~iDl~~--------~~~~~~---~~~~l~~~gvd~ 133 (217)
T COG0269 80 GADWVTVLGAAD---------------DATIKKAIKVAKEYGKEVQIDLIG--------VWDPEQ---RAKWLKELGVDQ 133 (217)
T ss_pred CCCEEEEEecCC---------------HHHHHHHHHHHHHcCCeEEEEeec--------CCCHHH---HHHHHHHhCCCE
Confidence 999988865432 345778899999999998777652 235544 555566689987
Q ss_pred EEEc-----CCCCCCcHHHHHHHHHHHHHhCC-CceEEEEeCCCCCcHHHHHHHHHHcCCCEE
Q 018252 294 ISLG-----DTIGVGTPGTVVPMLEAVMAVVP-VEKLAVHLHDTYGQSLPNILISLQVSPMHA 350 (359)
Q Consensus 294 I~L~-----DT~G~~~P~~v~~lv~~l~~~~p-~~~L~~H~HNd~GLAlANalaAv~AGa~~I 350 (359)
+.+= -+.|.--+++. +..+++... +.++.+ +=|+..-+.-.....|++.|
T Consensus 134 ~~~H~g~D~q~~G~~~~~~~---l~~ik~~~~~g~~vAV----aGGI~~~~i~~~~~~~~~iv 189 (217)
T COG0269 134 VILHRGRDAQAAGKSWGEDD---LEKIKKLSDLGAKVAV----AGGITPEDIPLFKGIGADIV 189 (217)
T ss_pred EEEEecccHhhcCCCccHHH---HHHHHHhhccCceEEE----ecCCCHHHHHHHhcCCCCEE
Confidence 6652 22354444333 333444332 244555 34777778888888887765
No 245
>TIGR01362 KDO8P_synth 3-deoxy-8-phosphooctulonate synthase. In Gram-negative bacteria, this is the first step in the biosynthesis of 3-deoxy-D-manno-octulosonate, part of the oligosaccharide core of lipopolysaccharide.
Probab=93.77 E-value=6.8 Score=37.78 Aligned_cols=176 Identities=14% Similarity=0.076 Sum_probs=106.3
Q ss_pred CHHHHHHHHHHHHhC----CCCEEEEecc-----CCCCCcCCCC--CHHHHHHHhhhcCCCeEEEEeCChHhHHHHHHcC
Q 018252 146 PTGVKVELIRRLVSS----GLPVVEATSF-----VSPKWVPQLA--DARDVMEAVRDLEGARLPVLTPNLKGFEAAIAAG 214 (359)
Q Consensus 146 ~~~~k~~ia~~L~~a----Gv~~IEvG~f-----vspk~vPq~~--D~~ev~~~l~~~~~~~l~~l~~n~~gie~a~~aG 214 (359)
+.++.+++++.|.++ |+..+==|+| .+|..+-.+. +.-.+++.+++.-+..+..=+-+..+++.+.+.
T Consensus 14 s~e~~~~~A~~lk~~~~~~~~~~~fk~sf~KapRTsp~sFqG~G~eeGL~iL~~vk~~~glpvvTeV~~~~~~~~vae~- 92 (258)
T TIGR01362 14 SEDHALRVAEKLKELTSKLGVPFIFKSSFDKANRSSIHSFRGPGLEEGLKILQKVKEEFGVPILTDVHESSQCEPVAEV- 92 (258)
T ss_pred CHHHHHHHHHHHHHHHHhcCCCeEEecccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHhh-
Confidence 567889999999985 5555544444 2444333333 233455555555666666555677888888776
Q ss_pred CCEEEEecCCchHHHHhhhcCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHHCCcCEE
Q 018252 215 AKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEI 294 (359)
Q Consensus 215 v~~V~i~~s~S~~~~~~n~~~t~~e~l~~i~~~i~~Ak~~G~~V~~~is~~fg~~~~~r~~~e~l~~~a~~l~~~Gad~I 294 (359)
+|.+.|-. |+..|+ ++++.+.+.|..|-. = .+--.++++....++.+...|-..|
T Consensus 93 vDilQIgA-----rn~rn~------------~LL~a~g~t~kpV~l--K------rG~~~t~~e~l~aaeyi~~~Gn~~v 147 (258)
T TIGR01362 93 VDIIQIPA-----FLCRQT------------DLLVAAAKTGRIVNV--K------KGQFLSPWDMKNVVEKVLSTGNKNI 147 (258)
T ss_pred CcEEEeCc-----hhcchH------------HHHHHHhccCCeEEe--c------CCCcCCHHHHHHHHHHHHHcCCCcE
Confidence 78888743 322221 555555566776621 0 1112588999999999999999999
Q ss_pred EEcC---CCCCCcH-HHHHHHHHHHHHhCCCceEEE---Ee-----------CCCCCcHHHHHHHHHHcCCCEE
Q 018252 295 SLGD---TIGVGTP-GTVVPMLEAVMAVVPVEKLAV---HL-----------HDTYGQSLPNILISLQVSPMHA 350 (359)
Q Consensus 295 ~L~D---T~G~~~P-~~v~~lv~~l~~~~p~~~L~~---H~-----------HNd~GLAlANalaAv~AGa~~I 350 (359)
.||. |+|+..- .++.. +..+++. +.|+-+ |. =-++-+-.+-+.||+.+|||-+
T Consensus 148 iLcERG~tf~y~r~~~D~~~-ip~~k~~--~~PVi~DpSHsvq~pg~~g~~s~G~r~~v~~la~AAvA~GaDGl 218 (258)
T TIGR01362 148 LLCERGTSFGYNNLVVDMRS-LPIMREL--GCPVIFDATHSVQQPGGLGGASGGLREFVPTLARAAVAVGIDGL 218 (258)
T ss_pred EEEeCCCCcCCCCcccchhh-hHHHHhc--CCCEEEeCCccccCCCCCCCCCCCcHHHHHHHHHHHHHhCCCEE
Confidence 9887 3333210 11111 2334442 244555 54 2334455788999999999865
No 246
>PRK14325 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=93.75 E-value=4.3 Score=41.72 Aligned_cols=144 Identities=16% Similarity=0.198 Sum_probs=86.0
Q ss_pred CCCHHHHHHHHHHHHhCCCCEEEEec--c-CCCC-Cc-CCCCCHHHHHHHhhhcCCC---eEEEEeCC---hHhHHHHHH
Q 018252 144 TVPTGVKVELIRRLVSSGLPVVEATS--F-VSPK-WV-PQLADARDVMEAVRDLEGA---RLPVLTPN---LKGFEAAIA 212 (359)
Q Consensus 144 ~~~~~~k~~ia~~L~~aGv~~IEvG~--f-vspk-~v-Pq~~D~~ev~~~l~~~~~~---~l~~l~~n---~~gie~a~~ 212 (359)
..+.++.++-++.|.+.|++.|.+.. + .... .. +......++++.+.+.++. ++....|. .+-++...+
T Consensus 175 sr~~e~Iv~Ei~~l~~~g~~ei~l~d~~~~~y~~~~~~~~~~~l~~Ll~~l~~~~~~~~ir~~~~~p~~~~~ell~~l~~ 254 (444)
T PRK14325 175 SRPVDDVLAEVAQLAEQGVREITLLGQNVNAYRGEGPDGEIADFAELLRLVAAIDGIERIRYTTSHPRDFTDDLIEAYAD 254 (444)
T ss_pred cCCHHHHHHHHHHHHHCCCcEEEEEeeccccccCCCCCCCcchHHHHHHHHHhcCCccEEEEccCCcccCCHHHHHHHHc
Confidence 46889999999999999999987653 1 1100 00 0012345566666555543 22222232 233555555
Q ss_pred cC--CCEEEEec-CCchHHHHhhhcCCHHHHHHHHHHHHHHHHhC--CCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHH
Q 018252 213 AG--AKEVAIFA-SASEAFSKSNINCSIEDSLVRYRAVAHAAKVL--SIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELH 287 (359)
Q Consensus 213 aG--v~~V~i~~-s~S~~~~~~n~~~t~~e~l~~i~~~i~~Ak~~--G~~V~~~is~~fg~~~~~r~~~e~l~~~a~~l~ 287 (359)
+| ...+++-+ +.|+.-. ..+|+.. ..+.+.++++.++++ |+.+.+++. +|.|.+ +.+.+.+..+.+.
T Consensus 255 ~~~~~~~l~igiqSgs~~vL-k~m~R~~--~~~~~~~~i~~lr~~~~gi~v~~~~I--vG~PgE---T~ed~~~tl~~i~ 326 (444)
T PRK14325 255 LPKLVPFLHLPVQSGSDRIL-KAMNRGH--TALEYKSIIRKLRAARPDIAISSDFI--VGFPGE---TDEDFEATMKLIE 326 (444)
T ss_pred CCcccCceeccCCcCCHHHH-HhCCCCC--CHHHHHHHHHHHHHHCCCCEEEeeEE--EECCCC---CHHHHHHHHHHHH
Confidence 54 77788755 4454433 3455432 345677888888887 677777776 888766 5566666666677
Q ss_pred HCCcCEEE
Q 018252 288 DMGCFEIS 295 (359)
Q Consensus 288 ~~Gad~I~ 295 (359)
+.+.+.+.
T Consensus 327 ~~~~~~~~ 334 (444)
T PRK14325 327 DVGFDQSF 334 (444)
T ss_pred hcCCCeee
Confidence 77776544
No 247
>PRK07379 coproporphyrinogen III oxidase; Provisional
Probab=93.73 E-value=2.5 Score=42.96 Aligned_cols=97 Identities=12% Similarity=0.034 Sum_probs=66.7
Q ss_pred CCCeEEEEe-C---ChHhHHHHHHcCCCEEEEecCCchHHHHhhhcCCHHHHHHHHHHHHHHHHhCCCc-EEEEEeeeec
Q 018252 193 EGARLPVLT-P---NLKGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIP-VRGYVSCVVG 267 (359)
Q Consensus 193 ~~~~l~~l~-~---n~~gie~a~~aGv~~V~i~~s~S~~~~~~n~~~t~~e~l~~i~~~i~~Ak~~G~~-V~~~is~~fg 267 (359)
++.++..-+ | +.+.++...++|+.+|.+-+..-+-.....+|+.. ..+.+.++++.+++.|++ +.+.++ +|
T Consensus 100 ~~~eit~E~~P~~lt~e~l~~l~~~GvnrislGvQS~~d~~L~~l~R~~--~~~~~~~ai~~l~~~G~~~v~~dlI--~G 175 (400)
T PRK07379 100 PDAEISLEIDPGTFDLEQLQGYRSLGVNRVSLGVQAFQDELLALCGRSH--RVKDIFAAVDLIHQAGIENFSLDLI--SG 175 (400)
T ss_pred CCCEEEEEeCCCcCCHHHHHHHHHCCCCEEEEEcccCCHHHHHHhCCCC--CHHHHHHHHHHHHHcCCCeEEEEee--cC
Confidence 345665544 3 23567778889999999876433333344556532 234556778888999998 766665 88
Q ss_pred CCCCCCCCHHHHHHHHHHHHHCCcCEEEE
Q 018252 268 CPVEGAIPPSKVAYVAKELHDMGCFEISL 296 (359)
Q Consensus 268 ~~~~~r~~~e~l~~~a~~l~~~Gad~I~L 296 (359)
.|.. +.+.+.+-++.+.+++++.|++
T Consensus 176 lPgq---t~e~~~~tl~~~~~l~p~~is~ 201 (400)
T PRK07379 176 LPHQ---TLEDWQASLEAAIALNPTHLSC 201 (400)
T ss_pred CCCC---CHHHHHHHHHHHHcCCCCEEEE
Confidence 7754 7778888888999999998765
No 248
>PF13714 PEP_mutase: Phosphoenolpyruvate phosphomutase; PDB: 1ZLP_A 3EOO_C 1UJQ_D 1O5Q_A 2DUA_A 2HJP_A 2HRW_A 2QIW_A 3KZ2_B 3IH1_B ....
Probab=93.64 E-value=2.4 Score=40.27 Aligned_cols=181 Identities=16% Similarity=0.147 Sum_probs=104.9
Q ss_pred HHHHHhCCCCEEEEecc--CCCCCcCC--CCCHHHHHHHhhhc-CCCeEEEEeC------C-h----HhHHHHHHcCCCE
Q 018252 154 IRRLVSSGLPVVEATSF--VSPKWVPQ--LADARDVMEAVRDL-EGARLPVLTP------N-L----KGFEAAIAAGAKE 217 (359)
Q Consensus 154 a~~L~~aGv~~IEvG~f--vspk~vPq--~~D~~ev~~~l~~~-~~~~l~~l~~------n-~----~gie~a~~aGv~~ 217 (359)
++.+.++|++.|=++++ +...-+|- +-...+++..++.+ ..+.+.+.+. + . +-+++..++|+.-
T Consensus 22 Ar~~e~~Gf~ai~~sg~~~a~s~G~pD~~~lt~~e~~~~~~~I~~~~~iPv~vD~d~GyG~~~~~v~~tv~~~~~aG~ag 101 (238)
T PF13714_consen 22 ARLAERAGFDAIATSGAGVAASLGYPDGGLLTLTEMLAAVRRIARAVSIPVIVDADTGYGNDPENVARTVRELERAGAAG 101 (238)
T ss_dssp HHHHHHTT-SEEEEHHHHHHHHTTS-SSS-S-HHHHHHHHHHHHHHSSSEEEEE-TTTSSSSHHHHHHHHHHHHHCT-SE
T ss_pred HHHHHHcCCCEEEechHHHHHHcCCCCCCCCCHHHHHHHHHHHHhhhcCcEEEEcccccCchhHHHHHHHHHHHHcCCcE
Confidence 55677789999888753 11111222 23456777777653 2344555553 2 2 2345566789999
Q ss_pred EEEecCCchHHHHhhhcCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHHCCcCEEEEc
Q 018252 218 VAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLG 297 (359)
Q Consensus 218 V~i~~s~S~~~~~~n~~~t~~e~l~~i~~~i~~Ak~~G~~V~~~is~~fg~~~~~r~~~e~l~~~a~~l~~~Gad~I~L~ 297 (359)
|++-..... + ..+.=.+.++..++++.+.+.+++.++-+.+--- +|.. .....++.++-++...++|||.|.+.
T Consensus 102 i~IEDq~~~-~-~~~~l~~~ee~~~kI~Aa~~a~~~~~~~I~ARTD-a~~~---~~~~~deaI~R~~aY~eAGAD~ifi~ 175 (238)
T PF13714_consen 102 INIEDQRCG-H-GGKQLVSPEEMVAKIRAAVDARRDPDFVIIARTD-AFLR---AEEGLDEAIERAKAYAEAGADMIFIP 175 (238)
T ss_dssp EEEESBSTT-T-STT-B--HHHHHHHHHHHHHHHSSTTSEEEEEEC-HHCH---HHHHHHHHHHHHHHHHHTT-SEEEET
T ss_pred EEeeccccC-C-CCCceeCHHHHHHHHHHHHHhccCCeEEEEEecc-cccc---CCCCHHHHHHHHHHHHHcCCCEEEeC
Confidence 999876111 2 1111237899999999999999888854432211 1110 01244667777778889999998864
Q ss_pred CCCCCCcHHHHHHHHHHHHHhCCCceEEEEeCCCCCcHHHHHHHHHHcCCCEEec
Q 018252 298 DTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQVSPMHAKP 352 (359)
Q Consensus 298 DT~G~~~P~~v~~lv~~l~~~~p~~~L~~H~HNd~GLAlANalaAv~AGa~~ID~ 352 (359)
|..+.+++.++.+.+ + .|+-+..+ .+. -+.-.--++|+++|-.
T Consensus 176 ---~~~~~~~i~~~~~~~----~-~Pl~v~~~--~~~--~~~~eL~~lGv~~v~~ 218 (238)
T PF13714_consen 176 ---GLQSEEEIERIVKAV----D-GPLNVNPG--PGT--LSAEELAELGVKRVSY 218 (238)
T ss_dssp ---TSSSHHHHHHHHHHH----S-SEEEEETT--SSS--S-HHHHHHTTESEEEE
T ss_pred ---CCCCHHHHHHHHHhc----C-CCEEEEcC--CCC--CCHHHHHHCCCcEEEE
Confidence 446677766666655 2 46777664 222 5556667888887754
No 249
>PF04481 DUF561: Protein of unknown function (DUF561); InterPro: IPR007570 Protein in this entry are of unknown function and are found in cyanobacteria and the chloroplasts of algae. As the family is exclusively found in phototrophic organisms it may play a role in photosynthesis.
Probab=93.64 E-value=3.6 Score=38.85 Aligned_cols=178 Identities=18% Similarity=0.212 Sum_probs=110.0
Q ss_pred CCCCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcCCCCCHHHHHHHhhhcCCCeEEEEeCChHhHHHHHHcCCCEEEEec
Q 018252 143 NTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPVLTPNLKGFEAAIAAGAKEVAIFA 222 (359)
Q Consensus 143 ~~~~~~~k~~ia~~L~~aGv~~IEvG~fvspk~vPq~~D~~ev~~~l~~~~~~~l~~l~~n~~gie~a~~aGv~~V~i~~ 222 (359)
.+|..+...+++++-...|..+|++.. |++ +.+.++...+..+.+=.-..+.+-.++++|++.|.+--
T Consensus 22 nNFd~~~V~~i~~AA~~ggAt~vDIAa-----------dp~-LV~~~~~~s~lPICVSaVep~~f~~aV~AGAdliEIGN 89 (242)
T PF04481_consen 22 NNFDAESVAAIVKAAEIGGATFVDIAA-----------DPE-LVKLAKSLSNLPICVSAVEPELFVAAVKAGADLIEIGN 89 (242)
T ss_pred cccCHHHHHHHHHHHHccCCceEEecC-----------CHH-HHHHHHHhCCCCeEeecCCHHHHHHHHHhCCCEEEecc
Confidence 469999999999999999999999985 543 45667766666655544466789999999999877621
Q ss_pred CCchHHHHhhhcCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHHCCcCEEEEcCCCCC
Q 018252 223 SASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGV 302 (359)
Q Consensus 223 s~S~~~~~~n~~~t~~e~l~~i~~~i~~Ak~~G~~V~~~is~~fg~~~~~r~~~e~l~~~a~~l~~~Gad~I~L~DT~G~ 302 (359)
=|.|=......+.+| +..+.+..|++=..+-..++ -|. -.+.++=.+++..+.++|+|.|- |=|.
T Consensus 90 --fDsFY~qGr~f~a~e----VL~Lt~~tR~LLP~~~LsVT----VPH--iL~ld~Qv~LA~~L~~~GaDiIQ---TEGg 154 (242)
T PF04481_consen 90 --FDSFYAQGRRFSAEE----VLALTRETRSLLPDITLSVT----VPH--ILPLDQQVQLAEDLVKAGADIIQ---TEGG 154 (242)
T ss_pred --hHHHHhcCCeecHHH----HHHHHHHHHHhCCCCceEEe----cCc--cccHHHHHHHHHHHHHhCCcEEE---cCCC
Confidence 133322222223444 44566666666333322222 222 35778888999999999999886 3332
Q ss_pred Cc--H--HHHHHHHH----HHH------HhCCCceEEEEeCCCCCcHHHHHHHHHHcCCCEEec
Q 018252 303 GT--P--GTVVPMLE----AVM------AVVPVEKLAVHLHDTYGQSLPNILISLQVSPMHAKP 352 (359)
Q Consensus 303 ~~--P--~~v~~lv~----~l~------~~~p~~~L~~H~HNd~GLAlANalaAv~AGa~~ID~ 352 (359)
.+ | ..+-.+++ .+- +.+. +|+ =.--|+.--.+=.|+.+||..|-+
T Consensus 155 tss~p~~~g~lglIekaapTLAaay~ISr~v~-iPV----lcASGlS~vT~PmAiaaGAsGVGV 213 (242)
T PF04481_consen 155 TSSKPTSPGILGLIEKAAPTLAAAYAISRAVS-IPV----LCASGLSAVTAPMAIAAGASGVGV 213 (242)
T ss_pred CCCCCCCcchHHHHHHHhHHHHHHHHHHhccC-Cce----EeccCcchhhHHHHHHcCCcccch
Confidence 22 2 11111211 111 1111 222 234578878888899999987643
No 250
>TIGR02319 CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phosphorylmutase. This family consists of carboxyvinyl-carboxyphosphonate phosphorylmutase (CPEP phosphonomutase), an unusual enzyme involved in the biosynthesis of the antibiotic bialaphos. So far, it is known only in that pathway and only in Streptomyces hygroscopicus. Some related proteins annotated as being functionally equivalent are likely misannotated examples of methylisocitrate lyase, an enzyme of priopionate utilization.
Probab=93.61 E-value=4 Score=40.11 Aligned_cols=187 Identities=10% Similarity=0.009 Sum_probs=106.8
Q ss_pred HHHHHHHhCCCCEEEEec-cC--CCCCcCC--CCCHHHHHHHhhhc-CCCeEEEEeCC---------h-HhHHHHHHcCC
Q 018252 152 ELIRRLVSSGLPVVEATS-FV--SPKWVPQ--LADARDVMEAVRDL-EGARLPVLTPN---------L-KGFEAAIAAGA 215 (359)
Q Consensus 152 ~ia~~L~~aGv~~IEvG~-fv--spk~vPq--~~D~~ev~~~l~~~-~~~~l~~l~~n---------~-~gie~a~~aGv 215 (359)
-=++...++|++.|=+++ .+ +..-.|- +-+.++++..++.+ ..+.+.+++.- . +-+++..++|+
T Consensus 27 ~SArl~e~aGf~ai~~sg~~~~as~lG~pD~g~l~~~e~~~~~~~I~~~~~lPv~aD~dtGyG~~~~v~r~V~~~~~aGa 106 (294)
T TIGR02319 27 LSAKVIQQAGFPAVHMTGSGTSASMLGLPDLGFTSVSEQAINAKNIVLAVDVPVIMDADAGYGNAMSVWRATREFERVGI 106 (294)
T ss_pred HHHHHHHHcCCCEEEecHHHHHHHHcCCCCcCCCCHHHHHHHHHHHHhccCCCEEEECCCCCCCcHHHHHHHHHHHHcCC
Confidence 345677789999998743 21 1112232 23456777777654 23444555431 1 23566777999
Q ss_pred CEEEEecCCchHHHHhhhc---CCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHHCCcC
Q 018252 216 KEVAIFASASEAFSKSNIN---CSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCF 292 (359)
Q Consensus 216 ~~V~i~~s~S~~~~~~n~~---~t~~e~l~~i~~~i~~Ak~~G~~V~~~is~~fg~~~~~r~~~e~l~~~a~~l~~~Gad 292 (359)
.-|+|-..+.+-..-+.-+ .+.++..++++.+.+..++-.+-+.+-.- ++ .....++.++-+++..++|||
T Consensus 107 agi~IEDq~~pK~cg~~~~k~lv~~ee~~~kI~Aa~~A~~~~d~~I~ARTD-a~-----~~~g~deaI~Ra~aY~eAGAD 180 (294)
T TIGR02319 107 VGYHLEDQVNPKRCGHLEGKRLISTEEMTGKIEAAVEAREDEDFTIIARTD-AR-----ESFGLDEAIRRSREYVAAGAD 180 (294)
T ss_pred eEEEEECCCCccccCCCCCccccCHHHHHHHHHHHHHhccCCCeEEEEEec-cc-----ccCCHHHHHHHHHHHHHhCCC
Confidence 9999977654321111112 36788888888777665543332222111 11 123567888888899999999
Q ss_pred EEEEcCCCCCCcHHHHHHHHHHHHHhCCCceEEEEeCCCCCcHHHHHHHHHHcCCCEEec
Q 018252 293 EISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQVSPMHAKP 352 (359)
Q Consensus 293 ~I~L~DT~G~~~P~~v~~lv~~l~~~~p~~~L~~H~HNd~GLAlANalaAv~AGa~~ID~ 352 (359)
.|.+. |..+++++.++.+.+. .| +.+-+-...... .-+.-..-++|+++|-.
T Consensus 181 ~ifi~---~~~~~~ei~~~~~~~~--~P-~~~nv~~~~~~p--~~s~~eL~~lG~~~v~~ 232 (294)
T TIGR02319 181 CIFLE---AMLDVEEMKRVRDEID--AP-LLANMVEGGKTP--WLTTKELESIGYNLAIY 232 (294)
T ss_pred EEEec---CCCCHHHHHHHHHhcC--CC-eeEEEEecCCCC--CCCHHHHHHcCCcEEEE
Confidence 99985 6788888887777653 23 212333322222 11344555668777643
No 251
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=93.55 E-value=1.9 Score=41.38 Aligned_cols=132 Identities=14% Similarity=0.021 Sum_probs=76.7
Q ss_pred HHHHHHcCCCEEEEecCCchHHHHhhhcCCHHHHHHHHHHHHHHHHhC-CCcEEEEEeeeecCCCCCCCCHHHHHHHHHH
Q 018252 207 FEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVL-SIPVRGYVSCVVGCPVEGAIPPSKVAYVAKE 285 (359)
Q Consensus 207 ie~a~~aGv~~V~i~~s~S~~~~~~n~~~t~~e~l~~i~~~i~~Ak~~-G~~V~~~is~~fg~~~~~r~~~e~l~~~a~~ 285 (359)
++.+.+.|++.|.+-++.... +.+.+..+..+.+.++++..|+. ++.+.+-+.. ..++++..++++.
T Consensus 117 a~~~~~~G~d~ielN~~cP~~----~~~~~~~~~~~~~~eiv~~vr~~~~~pv~vKl~~--------~~~~~~~~~~a~~ 184 (289)
T cd02810 117 ARKIERAGAKALELNLSCPNV----GGGRQLGQDPEAVANLLKAVKAAVDIPLLVKLSP--------YFDLEDIVELAKA 184 (289)
T ss_pred HHHHHHhCCCEEEEEcCCCCC----CCCcccccCHHHHHHHHHHHHHccCCCEEEEeCC--------CCCHHHHHHHHHH
Confidence 455566789976654321111 11111112233445555555554 5566544431 2467789999999
Q ss_pred HHHCCcCEEEEcCCCCC-------------------CcH---HHHHHHHHHHHHhCC-CceEEEEeCCCCCcHHHHHHHH
Q 018252 286 LHDMGCFEISLGDTIGV-------------------GTP---GTVVPMLEAVMAVVP-VEKLAVHLHDTYGQSLPNILIS 342 (359)
Q Consensus 286 l~~~Gad~I~L~DT~G~-------------------~~P---~~v~~lv~~l~~~~p-~~~L~~H~HNd~GLAlANalaA 342 (359)
+.++|+|-|.+..|.+. .-+ ....++++.+++.++ +++|-.=+--+. ...+...
T Consensus 185 l~~~Gad~i~~~~~~~~~~~~~~~~~~~~~~~~~g~sg~~~~~~~~~~v~~i~~~~~~~ipiia~GGI~~---~~da~~~ 261 (289)
T cd02810 185 AERAGADGLTAINTISGRVVDLKTVGPGPKRGTGGLSGAPIRPLALRWVARLAARLQLDIPIIGVGGIDS---GEDVLEM 261 (289)
T ss_pred HHHcCCCEEEEEcccCccceecccCccccCCCCCccCcHHHHHHHHHHHHHHHHhcCCCCCEEEECCCCC---HHHHHHH
Confidence 99999999998655321 111 113567888888775 456554332221 3677788
Q ss_pred HHcCCCEEece
Q 018252 343 LQVSPMHAKPC 353 (359)
Q Consensus 343 v~AGa~~ID~t 353 (359)
+.+||+.|-.+
T Consensus 262 l~~GAd~V~vg 272 (289)
T cd02810 262 LMAGASAVQVA 272 (289)
T ss_pred HHcCccHheEc
Confidence 88999887654
No 252
>TIGR01290 nifB nitrogenase cofactor biosynthesis protein NifB. This model describes NifB, a protein required for the biosynthesis of the iron-molybdenum (or iron-vanadium) cofactor used by the nitrogen-fixing enzyme nitrogenase. Archaeal homologs lack the most C-terminal region and score between the trusted and noise cutoffs of this model.
Probab=93.46 E-value=11 Score=39.10 Aligned_cols=145 Identities=18% Similarity=0.175 Sum_probs=87.9
Q ss_pred CCCCHHHHHHHHHHHHhC--CCCEEEEeccCCCCCcCCCCCHHHHHHHhhh-cCCCeEEEEeCC----hHhHHHHHHcCC
Q 018252 143 NTVPTGVKVELIRRLVSS--GLPVVEATSFVSPKWVPQLADARDVMEAVRD-LEGARLPVLTPN----LKGFEAAIAAGA 215 (359)
Q Consensus 143 ~~~~~~~k~~ia~~L~~a--Gv~~IEvG~fvspk~vPq~~D~~ev~~~l~~-~~~~~l~~l~~n----~~gie~a~~aGv 215 (359)
..+++++.++.++.+.+. ++..|=+..+-.|-..| ....+.+..+++ .++..+. +..| .+.++..++.|+
T Consensus 58 ~~Ltpee~~~~i~~v~~~~~~~~~V~iaG~GEPLl~~--e~~~~~l~~~~~~~~~i~i~-lsTNG~~l~e~i~~L~~~gv 134 (442)
T TIGR01290 58 ELLTPEQALRKARQVAAEIPQLSVVGIAGPGDPLANI--GKTFQTLELVARQLPDVKLC-LSTNGLMLPEHVDRLVDLGV 134 (442)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCCEEEEecCCCcccCc--cccHHHHHHHHHhcCCCeEE-EECCCCCCHHHHHHHHHCCC
Confidence 358999999999988764 45555444333331111 112233444443 4677653 3333 356888888999
Q ss_pred CEEEEecCCc--hHHHHh---------h-hcCCHHH-HHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHH
Q 018252 216 KEVAIFASAS--EAFSKS---------N-INCSIED-SLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYV 282 (359)
Q Consensus 216 ~~V~i~~s~S--~~~~~~---------n-~~~t~~e-~l~~i~~~i~~Ak~~G~~V~~~is~~fg~~~~~r~~~e~l~~~ 282 (359)
+.|.+.+... +.|.+. + .|..... .+++..+.++++.+.|+.+.++.... | ....+++.++
T Consensus 135 d~V~islka~d~e~~~~Iy~~v~~~g~~~tG~~~~~il~e~~l~~l~~l~~~G~~v~v~~vlI---p---GiND~~i~~l 208 (442)
T TIGR01290 135 GHVTITINAIDPAVGEKIYPWVWYEGERYTGREAADLLIERQLEGLEKLTERGILVKVNSVLI---P---GINDEHLVEV 208 (442)
T ss_pred CeEEEeccCCCHHHHhhcchhhccccccccCcchHHHHHHHHHHHHHHHHhCCCeEEEEEEee---C---CcCHHHHHHH
Confidence 9998877543 344321 1 1222222 25666777888888999876554322 1 2344889999
Q ss_pred HHHHHHCCcCEEEE
Q 018252 283 AKELHDMGCFEISL 296 (359)
Q Consensus 283 a~~l~~~Gad~I~L 296 (359)
++.+.+.|++.++|
T Consensus 209 ~~~~~~lg~~~~nl 222 (442)
T TIGR01290 209 SKQVKELGAFLHNV 222 (442)
T ss_pred HHHHHhCCCcEEEe
Confidence 99999999987766
No 253
>PRK08207 coproporphyrinogen III oxidase; Provisional
Probab=93.43 E-value=2.2 Score=44.70 Aligned_cols=108 Identities=13% Similarity=0.135 Sum_probs=73.3
Q ss_pred hHhHHHHHHcCCCEEEEecCCchHHHHhhhcCCHHHHHHHHHHHHHHHHhCCC-cEEEEEeeeecCCCCCCCCHHHHHHH
Q 018252 204 LKGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSI-PVRGYVSCVVGCPVEGAIPPSKVAYV 282 (359)
Q Consensus 204 ~~gie~a~~aGv~~V~i~~s~S~~~~~~n~~~t~~e~l~~i~~~i~~Ak~~G~-~V~~~is~~fg~~~~~r~~~e~l~~~ 282 (359)
.+-++...++|+.+|.+-+....--....+|+. ...+.+.++++.++++|+ .+...++ +|.|.. +.+.+.+.
T Consensus 269 ~e~L~~Lk~~Gv~RISIGvQS~~d~vLk~igR~--ht~e~v~~ai~~ar~~Gf~~In~DLI--~GLPgE---t~ed~~~t 341 (488)
T PRK08207 269 EEKLEVLKKYGVDRISINPQTMNDETLKAIGRH--HTVEDIIEKFHLAREMGFDNINMDLI--IGLPGE---GLEEVKHT 341 (488)
T ss_pred HHHHHHHHhcCCCeEEEcCCcCCHHHHHHhCCC--CCHHHHHHHHHHHHhCCCCeEEEEEE--eCCCCC---CHHHHHHH
Confidence 356788888999999987644332333345552 234556788889999999 5666665 887754 67788888
Q ss_pred HHHHHHCCcCEEEEc--------------CCCCCCcHHHHHHHHHHHHHh
Q 018252 283 AKELHDMGCFEISLG--------------DTIGVGTPGTVVPMLEAVMAV 318 (359)
Q Consensus 283 a~~l~~~Gad~I~L~--------------DT~G~~~P~~v~~lv~~l~~~ 318 (359)
++.+.+.+++.|.+- +......+.+..+++....+.
T Consensus 342 l~~l~~L~pd~isv~~L~i~~gT~l~~~~~~~~~~~~~~~~~m~~~a~~~ 391 (488)
T PRK08207 342 LEEIEKLNPESLTVHTLAIKRASRLTENKEKYKVADREEIEKMMEEAEEW 391 (488)
T ss_pred HHHHHhcCcCEEEEEeceEcCCChHHHhcCcCCCcCHHHHHHHHHHHHHH
Confidence 899999999877654 223344566666666655543
No 254
>TIGR02317 prpB methylisocitrate lyase. Members of this family are methylisocitrate lyase, also called (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate pyruvate-lyase. This enzyme acts in propionate metabolism. It cleaves a carbon-carbon bond to convert 2-methylisocitrate to pyruvate plus succinate. Some members of this family have been annotated, incorrectly it seems, as the related protein carboxyphosphoenolpyruvate phosphomutase, which is involved in synthesizing the antibiotic bialaphos in Streptomyces hygroscopicus.
Probab=93.35 E-value=2.7 Score=41.08 Aligned_cols=184 Identities=14% Similarity=0.030 Sum_probs=103.7
Q ss_pred HHHHHhCCCCEEEEecc-CC-CCCcCC--CCCHHHHHHHhhhc-CCCeEEEEeC------Ch----HhHHHHHHcCCCEE
Q 018252 154 IRRLVSSGLPVVEATSF-VS-PKWVPQ--LADARDVMEAVRDL-EGARLPVLTP------NL----KGFEAAIAAGAKEV 218 (359)
Q Consensus 154 a~~L~~aGv~~IEvG~f-vs-pk~vPq--~~D~~ev~~~l~~~-~~~~l~~l~~------n~----~gie~a~~aGv~~V 218 (359)
++...++|++.|=++++ ++ ..-.|- +-+.+++++.++.+ ..+.+.+.+. +. +-+++..++|+.-|
T Consensus 26 Ari~e~aGf~Ai~~sg~~~a~~lG~pD~g~lt~~e~~~~~~~I~~~~~iPviaD~d~GyG~~~~v~~tv~~~~~aG~agi 105 (285)
T TIGR02317 26 ALLAERAGFEAIYLSGAAVAASLGLPDLGITTLDEVAEDARRITRVTDLPLLVDADTGFGEAFNVARTVREMEDAGAAAV 105 (285)
T ss_pred HHHHHHcCCCEEEEcHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCCEEEECCCCCCCHHHHHHHHHHHHHcCCeEE
Confidence 45667789999988763 11 111222 23556777777654 2334444443 11 23567778999999
Q ss_pred EEecCCchHHHHhhhc---CCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHHCCcCEEE
Q 018252 219 AIFASASEAFSKSNIN---CSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEIS 295 (359)
Q Consensus 219 ~i~~s~S~~~~~~n~~---~t~~e~l~~i~~~i~~Ak~~G~~V~~~is~~fg~~~~~r~~~e~l~~~a~~l~~~Gad~I~ 295 (359)
++-..+.+-..-+--+ .+.++..++++.+.+.+++..+-+.+- +.++ .....++.++-++...++|||.|.
T Consensus 106 ~IEDq~~pK~cgh~~g~~lv~~ee~~~kI~Aa~~a~~~~d~~IiAR-TDa~-----~~~g~deAI~Ra~ay~~AGAD~vf 179 (285)
T TIGR02317 106 HIEDQVLPKRCGHLPGKELVSREEMVDKIAAAVDAKRDEDFVIIAR-TDAR-----AVEGLDAAIERAKAYVEAGADMIF 179 (285)
T ss_pred EEecCCCccccCCCCCccccCHHHHHHHHHHHHHhccCCCEEEEEE-cCcc-----cccCHHHHHHHHHHHHHcCCCEEE
Confidence 9977654322111112 267788888877765554322212111 1112 123467888888899999999999
Q ss_pred EcCCCCCCcHHHHHHHHHHHHHhCCCceE--EEEeCCCCCcHHHHHHHHHHcCCCEEece
Q 018252 296 LGDTIGVGTPGTVVPMLEAVMAVVPVEKL--AVHLHDTYGQSLPNILISLQVSPMHAKPC 353 (359)
Q Consensus 296 L~DT~G~~~P~~v~~lv~~l~~~~p~~~L--~~H~HNd~GLAlANalaAv~AGa~~ID~t 353 (359)
+. |.-+++++.++.+.+ | .|+ -+-..+.. ..-+.-..-++|+++|-..
T Consensus 180 i~---g~~~~e~i~~~~~~i----~-~Pl~~n~~~~~~~--p~~s~~eL~~lGv~~v~~~ 229 (285)
T TIGR02317 180 PE---ALTSLEEFRQFAKAV----K-VPLLANMTEFGKT--PLFTADELREAGYKMVIYP 229 (285)
T ss_pred eC---CCCCHHHHHHHHHhc----C-CCEEEEeccCCCC--CCCCHHHHHHcCCcEEEEc
Confidence 84 566777777666654 3 244 22222211 1112445566788877543
No 255
>PRK05283 deoxyribose-phosphate aldolase; Provisional
Probab=93.33 E-value=8.1 Score=37.29 Aligned_cols=150 Identities=17% Similarity=0.212 Sum_probs=94.3
Q ss_pred CCCCHHHHHHHHHHHHh--CCCCEEEEeccCCCCCcCCCCCHHHHHHHhhh-cC-CCeEEEEe--CC----h----HhHH
Q 018252 143 NTVPTGVKVELIRRLVS--SGLPVVEATSFVSPKWVPQLADARDVMEAVRD-LE-GARLPVLT--PN----L----KGFE 208 (359)
Q Consensus 143 ~~~~~~~k~~ia~~L~~--aGv~~IEvG~fvspk~vPq~~D~~ev~~~l~~-~~-~~~l~~l~--~n----~----~gie 208 (359)
...+.++..++.+.-.+ -|+..+-+ +|.++| ...+.++. .. ++++.+.+ |. . ..++
T Consensus 21 p~~T~~~I~~lc~eA~~~~~~faaVcV----~P~~v~------~a~~~L~~~~~~~vkv~tVigFP~G~~~t~~K~~Ea~ 90 (257)
T PRK05283 21 DDDTDEKVIALCHQAKTPVGNTAAICI----YPRFIP------IARKTLREQGTPEIRIATVTNFPHGNDDIDIALAETR 90 (257)
T ss_pred CCCCHHHHHHHHHHHHhcCCCeeEEEE----CHHHHH------HHHHHhcccCCCCCeEEEEecCCCCCCcHHHHHHHHH
Confidence 35778888888888777 46655543 343322 23344432 12 57776666 41 1 3577
Q ss_pred HHHHcCCCEEEEecCCchHHHHhhhcCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHH-HHHHHHHHHH
Q 018252 209 AAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPS-KVAYVAKELH 287 (359)
Q Consensus 209 ~a~~aGv~~V~i~~s~S~~~~~~n~~~t~~e~l~~i~~~i~~Ak~~G~~V~~~is~~fg~~~~~r~~~e-~l~~~a~~l~ 287 (359)
.|++.|+++|.+.+..+.... ...+...+.+..+++.+.. |..+.+-|.. +..+.+ .+..+++.+.
T Consensus 91 ~Ai~~GAdEiD~Vinig~lk~-----g~~~~v~~ei~~v~~~~~~-~~~lKVIlEt-------~~L~~ee~i~~a~~~a~ 157 (257)
T PRK05283 91 AAIAYGADEVDVVFPYRALMA-----GNEQVGFELVKACKEACAA-NVLLKVIIET-------GELKDEALIRKASEIAI 157 (257)
T ss_pred HHHHcCCCEEeeeccHHHHhC-----CcHHHHHHHHHHHHHHhCC-CceEEEEEec-------cccCCHHHHHHHHHHHH
Confidence 889999999999887655432 2355667777788877752 4444433331 133445 5888999999
Q ss_pred HCCcCEEEEcCCCC----CCcHHHHHHHHHHHHH
Q 018252 288 DMGCFEISLGDTIG----VGTPGTVVPMLEAVMA 317 (359)
Q Consensus 288 ~~Gad~I~L~DT~G----~~~P~~v~~lv~~l~~ 317 (359)
++|+|-|- =+.| .++|+.++-+.+.+++
T Consensus 158 ~aGADFVK--TSTGf~~~gAt~edv~lm~~~i~~ 189 (257)
T PRK05283 158 KAGADFIK--TSTGKVPVNATLEAARIMLEVIRD 189 (257)
T ss_pred HhCCCEEE--cCCCCCCCCCCHHHHHHHHHHHHh
Confidence 99999654 3333 4678888777777654
No 256
>PRK01060 endonuclease IV; Provisional
Probab=93.26 E-value=7.6 Score=36.75 Aligned_cols=170 Identities=18% Similarity=0.133 Sum_probs=83.4
Q ss_pred HHHHHHHHHhCCCCEEEEeccCCCCCc-CCCCCH---HHHHHHhhhcCCCe---EEEEeC--------ChH---------
Q 018252 150 KVELIRRLVSSGLPVVEATSFVSPKWV-PQLADA---RDVMEAVRDLEGAR---LPVLTP--------NLK--------- 205 (359)
Q Consensus 150 k~~ia~~L~~aGv~~IEvG~fvspk~v-Pq~~D~---~ev~~~l~~~~~~~---l~~l~~--------n~~--------- 205 (359)
-.+.++.+.++|++.||+... .|... +..-+. +++.+.+++ .+++ +++..| +.+
T Consensus 14 ~~~~l~~~~~~G~d~vEl~~~-~p~~~~~~~~~~~~~~~lk~~~~~-~gl~~~~~~~h~~~~~nl~~~d~~~r~~s~~~~ 91 (281)
T PRK01060 14 LEGAVAEAAEIGANAFMIFTG-NPQQWKRKPLEELNIEAFKAACEK-YGISPEDILVHAPYLINLGNPNKEILEKSRDFL 91 (281)
T ss_pred HHHHHHHHHHcCCCEEEEECC-CCCCCcCCCCCHHHHHHHHHHHHH-cCCCCCceEEecceEecCCCCCHHHHHHHHHHH
Confidence 456778899999999999642 22211 111122 223333322 2333 322222 221
Q ss_pred --hHHHHHHcCCCEEEEecCCchHHHHhhhcCCHHHHHHHHHHHHHHH--HhCCCcEEEEEeeeecCCCCCCCCHHHHHH
Q 018252 206 --GFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAA--KVLSIPVRGYVSCVVGCPVEGAIPPSKVAY 281 (359)
Q Consensus 206 --gie~a~~aGv~~V~i~~s~S~~~~~~n~~~t~~e~l~~i~~~i~~A--k~~G~~V~~~is~~fg~~~~~r~~~e~l~~ 281 (359)
.++.|.+.|++.|.+...... .....++.++.+.+.++.+ ...| |...|....+....--.+++.+.+
T Consensus 92 ~~~i~~A~~lga~~vv~h~G~~~------~~~~~~~~~~~~~e~l~~l~~~~~g--v~l~iEn~~~~~~~~~~~~~~~~~ 163 (281)
T PRK01060 92 IQEIERCAALGAKLLVFHPGSHL------GDIDEEDCLARIAESLNEALDKTQG--VTIVLENTAGQGSELGRRFEELAR 163 (281)
T ss_pred HHHHHHHHHcCCCEEEEcCCcCC------CCCcHHHHHHHHHHHHHHHHhcCCC--CEEEEecCCCCCCcccCCHHHHHH
Confidence 234455679998777543210 0111234566666666554 3345 444554322111011246777777
Q ss_pred HHHHHHHCCcCE-EEE-cCCC-----CCCcHHHHHHHHHHHHHhCC-CceEEEEeCCCC
Q 018252 282 VAKELHDMGCFE-ISL-GDTI-----GVGTPGTVVPMLEAVMAVVP-VEKLAVHLHDTY 332 (359)
Q Consensus 282 ~a~~l~~~Gad~-I~L-~DT~-----G~~~P~~v~~lv~~l~~~~p-~~~L~~H~HNd~ 332 (359)
+++.+.. +. +.+ -||. |.-.+....++++.+.+..+ +-...+|.||+.
T Consensus 164 l~~~v~~---~~~vg~~lD~gH~~~~g~d~~~~~~~~~~~~~~~~~~~~i~~vHl~D~~ 219 (281)
T PRK01060 164 IIDGVED---KSRVGVCLDTCHAFAAGYDLREDFEGVLAEFDRIVGLDRLKVMHLNDSK 219 (281)
T ss_pred HHHhcCC---cccEEEEEeHHhHhhcCCChHHHHHHHHHHHHHhhChhheeEEEEecCC
Confidence 7765532 22 322 2433 21112345577777776554 346788998875
No 257
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=93.25 E-value=3.9 Score=40.41 Aligned_cols=137 Identities=21% Similarity=0.185 Sum_probs=84.5
Q ss_pred HHHHHHcCCCEEEEecCC--------chHHHH--hhhcCCHHHHHHHHHHHHHHHHhC-C--CcEEEEEeeeecCCCCCC
Q 018252 207 FEAAIAAGAKEVAIFASA--------SEAFSK--SNINCSIEDSLVRYRAVAHAAKVL-S--IPVRGYVSCVVGCPVEGA 273 (359)
Q Consensus 207 ie~a~~aGv~~V~i~~s~--------S~~~~~--~n~~~t~~e~l~~i~~~i~~Ak~~-G--~~V~~~is~~fg~~~~~r 273 (359)
.+++.++|.|.|.+-..- |+..++ ..+|-+.++-.+.+.++++..|+. | +.+.+-++..- ...+.
T Consensus 160 A~~a~~aGfDgVei~~~~gyLl~qFlsp~~N~R~D~yGgsl~nr~rf~~eiv~aIR~~vG~d~~v~vri~~~~--~~~~g 237 (336)
T cd02932 160 ARRAVEAGFDVIEIHAAHGYLLHQFLSPLSNKRTDEYGGSLENRMRFLLEVVDAVRAVWPEDKPLFVRISATD--WVEGG 237 (336)
T ss_pred HHHHHHcCCCEEEEccccccHHHHhcCCccCCCCcccCCCHHHHhHHHHHHHHHHHHHcCCCceEEEEEcccc--cCCCC
Confidence 456677899988775421 222222 235777887788888888888865 3 34444444210 01234
Q ss_pred CCHHHHHHHHHHHHHCCcCEEEEcCCCCCC--------cHHHHHHHHHHHHHhCCCceEEE-EeCCCCCcHHHHHHHHHH
Q 018252 274 IPPSKVAYVAKELHDMGCFEISLGDTIGVG--------TPGTVVPMLEAVMAVVPVEKLAV-HLHDTYGQSLPNILISLQ 344 (359)
Q Consensus 274 ~~~e~l~~~a~~l~~~Gad~I~L~DT~G~~--------~P~~v~~lv~~l~~~~p~~~L~~-H~HNd~GLAlANalaAv~ 344 (359)
.+++...++++++.++|+|-|.+. .|.. .|....++.+.+++.++ ++|.. -.-. ....+..+++
T Consensus 238 ~~~~e~~~ia~~Le~~gvd~iev~--~g~~~~~~~~~~~~~~~~~~~~~ir~~~~-iPVi~~G~i~----t~~~a~~~l~ 310 (336)
T cd02932 238 WDLEDSVELAKALKELGVDLIDVS--SGGNSPAQKIPVGPGYQVPFAERIRQEAG-IPVIAVGLIT----DPEQAEAILE 310 (336)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEC--CCCCCcccccCCCccccHHHHHHHHhhCC-CCEEEeCCCC----CHHHHHHHHH
Confidence 578999999999999999988863 1211 12223467777888775 45443 2212 3566778888
Q ss_pred cC-CCEEec
Q 018252 345 VS-PMHAKP 352 (359)
Q Consensus 345 AG-a~~ID~ 352 (359)
.| ||.|-.
T Consensus 311 ~g~aD~V~~ 319 (336)
T cd02932 311 SGRADLVAL 319 (336)
T ss_pred cCCCCeehh
Confidence 88 887643
No 258
>TIGR01496 DHPS dihydropteroate synthase. This model represents dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis. The gene is usually designated folP (folic acid biosynthsis) or sul (sulfanilamide resistance). This model represents one branch of the family of pterin-binding enzymes (pfam00809) and of a cluster of dihydropteroate synthase and related enzymes (COG0294). Other members of pfam00809 and COG0294 are represented by TIGR00284.
Probab=93.25 E-value=0.54 Score=45.10 Aligned_cols=78 Identities=17% Similarity=0.155 Sum_probs=56.3
Q ss_pred CCCC-CCHHHHHHHHHHHHHCCcCEEEEcC-CCCC----CcHH-H---HHHHHHHHHHhCCCceEEEEeCCCCCcHHHHH
Q 018252 270 VEGA-IPPSKVAYVAKELHDMGCFEISLGD-TIGV----GTPG-T---VVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNI 339 (359)
Q Consensus 270 ~~~r-~~~e~l~~~a~~l~~~Gad~I~L~D-T~G~----~~P~-~---v~~lv~~l~~~~p~~~L~~H~HNd~GLAlANa 339 (359)
++++ .+++...+.++++.+.||+.|-++- +..- ..|+ + +..+++.+++.+ +++|.+|.++.- -+
T Consensus 15 dg~~~~~~~~~~~~a~~~~~~GA~iIDIG~~st~p~~~~i~~~~E~~rl~~~v~~~~~~~-~~plsiDT~~~~-----vi 88 (257)
T TIGR01496 15 DGGRFLSVDKAVAHAERMLEEGADIIDVGGESTRPGADRVSPEEELNRVVPVIKALRDQP-DVPISVDTYRAE-----VA 88 (257)
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcC-CCeEEEeCCCHH-----HH
Confidence 4566 4899999999999999999999951 1111 1222 3 666667776655 478999999854 44
Q ss_pred HHHHHcCCCEEece
Q 018252 340 LISLQVSPMHAKPC 353 (359)
Q Consensus 340 laAv~AGa~~ID~t 353 (359)
.+|+++|+++|+-.
T Consensus 89 ~~al~~G~~iINsi 102 (257)
T TIGR01496 89 RAALEAGADIINDV 102 (257)
T ss_pred HHHHHcCCCEEEEC
Confidence 57888999999754
No 259
>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage. Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to
Probab=93.25 E-value=5 Score=38.10 Aligned_cols=188 Identities=17% Similarity=0.170 Sum_probs=108.8
Q ss_pred HHHHHHHhCCCCEEEEeccC--CCCCcCC--CCCHHHHHHHhhhc-CCCeEEEEe--CC----h----HhHHHHHHcCCC
Q 018252 152 ELIRRLVSSGLPVVEATSFV--SPKWVPQ--LADARDVMEAVRDL-EGARLPVLT--PN----L----KGFEAAIAAGAK 216 (359)
Q Consensus 152 ~ia~~L~~aGv~~IEvG~fv--spk~vPq--~~D~~ev~~~l~~~-~~~~l~~l~--~n----~----~gie~a~~aGv~ 216 (359)
--++.+.++|++.|=+|+.. ...-.|- ..+.+++...++.+ +.+.+...+ +. . +-+++.+++|+.
T Consensus 20 ~sA~~~e~~G~~ai~~s~~~~~~s~G~pD~~~~~~~e~~~~~~~I~~~~~~Pv~~D~~~G~g~~~~~~~~v~~~~~~G~~ 99 (243)
T cd00377 20 LSARLAERAGFKAIYTSGAGVAASLGLPDGGLLTLDEVLAAVRRIARAVDLPVIADADTGYGNALNVARTVRELEEAGAA 99 (243)
T ss_pred HHHHHHHHcCCCEEEeccHHHHHhcCCCCCCcCCHHHHHHHHHHHHhhccCCEEEEcCCCCCCHHHHHHHHHHHHHcCCE
Confidence 34667888899999998631 1111232 23456666666643 333333333 22 1 235566678999
Q ss_pred EEEEecCCchHHHH---hhhcCCHHHHHHHHHHHHHHHHhC-CCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHHCCcC
Q 018252 217 EVAIFASASEAFSK---SNINCSIEDSLVRYRAVAHAAKVL-SIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCF 292 (359)
Q Consensus 217 ~V~i~~s~S~~~~~---~n~~~t~~e~l~~i~~~i~~Ak~~-G~~V~~~is~~fg~~~~~r~~~e~l~~~a~~l~~~Gad 292 (359)
-|++-....+-..- .+.-.+.+|..++++.+.+.+.+. .+.+.+-.- ++. .+....++.++.+++..++|||
T Consensus 100 gv~iED~~~~k~~g~~~~~~~~~~ee~~~ki~aa~~a~~~~~~~~IiARTD-a~~---~~~~~~~eai~Ra~ay~~AGAD 175 (243)
T cd00377 100 GIHIEDQVGPKKCGHHGGKVLVPIEEFVAKIKAARDARDDLPDFVIIARTD-ALL---AGEEGLDEAIERAKAYAEAGAD 175 (243)
T ss_pred EEEEecCCCCccccCCCCCeecCHHHHHHHHHHHHHHHhccCCeEEEEEcC-chh---ccCCCHHHHHHHHHHHHHcCCC
Confidence 99985443321110 012247899999999888887763 222221110 111 1124678899999999999999
Q ss_pred EEEEcCCCCCCcHHHHHHHHHHHHHhCCCceEEEEeCCCCCcHHHHHHHHHHcCCCEEece
Q 018252 293 EISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQVSPMHAKPC 353 (359)
Q Consensus 293 ~I~L~DT~G~~~P~~v~~lv~~l~~~~p~~~L~~H~HNd~GLAlANalaAv~AGa~~ID~t 353 (359)
.|.+. |..+++++.++.+. .+ .|+-+....... .-+.-.--+.|+++|-..
T Consensus 176 ~v~v~---~~~~~~~~~~~~~~----~~-~Pl~~~~~~~~~--~~~~~~l~~lG~~~v~~~ 226 (243)
T cd00377 176 GIFVE---GLKDPEEIRAFAEA----PD-VPLNVNMTPGGN--LLTVAELAELGVRRVSYG 226 (243)
T ss_pred EEEeC---CCCCHHHHHHHHhc----CC-CCEEEEecCCCC--CCCHHHHHHCCCeEEEEC
Confidence 99885 33366666555544 44 577776554432 223445556788887543
No 260
>COG0274 DeoC Deoxyribose-phosphate aldolase [Nucleotide transport and metabolism]
Probab=93.22 E-value=7.8 Score=36.74 Aligned_cols=184 Identities=17% Similarity=0.158 Sum_probs=113.8
Q ss_pred CCCCCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcCCCCCHHHHHHHhhhcCCCeEEEEe--C---Ch-----HhHHHHH
Q 018252 142 KNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPVLT--P---NL-----KGFEAAI 211 (359)
Q Consensus 142 ~~~~~~~~k~~ia~~L~~aGv~~IEvG~fvspk~vPq~~D~~ev~~~l~~~~~~~l~~l~--~---n~-----~gie~a~ 211 (359)
+...+.++..++.+.-.+.|+..+-+- |.|||. -.+.++.-...++...+ | +. ...+.++
T Consensus 18 k~~~T~~~I~~l~~eA~~~~f~avCV~----P~~V~~------A~~~l~g~~~~~v~tVigFP~G~~~t~~K~~Ea~~ai 87 (228)
T COG0274 18 KPDATEEDIARLCAEAKEYGFAAVCVN----PSYVPL------AKEALKGSTVVRVCTVIGFPLGANTTAVKAAEAREAI 87 (228)
T ss_pred CCCCCHHHHHHHHHHHHhhCceEEEEC----cchHHH------HHHHhccCCCeEEEEecCCCCCCChHHHHHHHHHHHH
Confidence 445778888888888888887766553 544442 12233322233454444 4 11 3566788
Q ss_pred HcCCCEEEEecCCchHHHHhhhcCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHHCCc
Q 018252 212 AAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGC 291 (359)
Q Consensus 212 ~aGv~~V~i~~s~S~~~~~~n~~~t~~e~l~~i~~~i~~Ak~~G~~V~~~is~~fg~~~~~r~~~e~l~~~a~~l~~~Ga 291 (359)
+.|.++|.+.++.... .....+...+.++.+.+.+.++ ..+.+-|. .+ ..+.+.....++.+.++|+
T Consensus 88 ~~GAdEiDmVinig~~-----k~g~~~~V~~eI~~v~~a~~~~-~~lKVIlE--t~-----~Lt~ee~~~A~~i~~~aGA 154 (228)
T COG0274 88 ENGADEIDMVINIGAL-----KSGNWEAVEREIRAVVEACADA-VVLKVILE--TG-----LLTDEEKRKACEIAIEAGA 154 (228)
T ss_pred HcCCCeeeeeeeHHHH-----hcCCHHHHHHHHHHHHHHhCCC-ceEEEEEe--cc-----ccCHHHHHHHHHHHHHhCC
Confidence 9999999998874332 2334667778888898888765 33333332 22 3566777999999999999
Q ss_pred CEEEEcC--CCCCCcHHHHHHHHHHHHHhCCCceEEEEeCCCCCcHHHHHHHHHHcCCCEEecee
Q 018252 292 FEISLGD--TIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQVSPMHAKPCF 354 (359)
Q Consensus 292 d~I~L~D--T~G~~~P~~v~~lv~~l~~~~p~~~L~~H~HNd~GLAlANalaAv~AGa~~ID~tl 354 (359)
|-|-=.= +.|-+|++++.-+.+.+.. .+++-.----.. ..-+++-+++|+.+|-+|-
T Consensus 155 dFVKTSTGf~~~gAT~edv~lM~~~vg~-----~vgvKaSGGIrt-~eda~~~i~aga~RiGtSs 213 (228)
T COG0274 155 DFVKTSTGFSAGGATVEDVKLMKETVGG-----RVGVKASGGIRT-AEDAKAMIEAGATRIGTSS 213 (228)
T ss_pred CEEEcCCCCCCCCCCHHHHHHHHHHhcc-----CceeeccCCcCC-HHHHHHHHHHhHHHhcccc
Confidence 9654211 1466777777766666532 344433222221 3567778888888886654
No 261
>COG2100 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=93.21 E-value=4.6 Score=40.43 Aligned_cols=176 Identities=13% Similarity=0.098 Sum_probs=112.8
Q ss_pred CCCcccCCCC----CCCCCHHHHHHHHHHHHhCCCCEEEEecc--CCCCCcCCCCCHHHHHHHhhhcCCCeEEEEeC---
Q 018252 132 VGPRDGLQNE----KNTVPTGVKVELIRRLVSSGLPVVEATSF--VSPKWVPQLADARDVMEAVRDLEGARLPVLTP--- 202 (359)
Q Consensus 132 ~TLRDG~Q~~----~~~~~~~~k~~ia~~L~~aGv~~IEvG~f--vspk~vPq~~D~~ev~~~l~~~~~~~l~~l~~--- 202 (359)
|+.-.|..+- ......+.-++-++..++..-+-+|+=.- ..|-..|-+ .++.+.++..+++.++.+-.
T Consensus 124 CSVdeGp~SrtR~~dy~Vd~eyLl~w~~kVa~~KgkglEaHlDGqGEP~lYP~l---~~lVqalk~~~~v~vVSmQTng~ 200 (414)
T COG2100 124 CSVDEGPYSRTRKLDYVVDPEYLLEWFEKVARFKGKGLEAHLDGQGEPLLYPHL---VDLVQALKEHKGVEVVSMQTNGV 200 (414)
T ss_pred EeccCCcccceeccceEecHHHHHHHHHHHHhhhCCCeEEEecCCCCCccchhH---HHHHHHHhcCCCceEEEEeeCce
Confidence 3344554443 35567888888889888888888888431 223333433 45678888889998887764
Q ss_pred --ChHhHHHHHHcCCCEEEEecCCch-HHHHhhhcCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHH
Q 018252 203 --NLKGFEAAIAAGAKEVAIFASASE-AFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKV 279 (359)
Q Consensus 203 --n~~gie~a~~aGv~~V~i~~s~S~-~~~~~n~~~t~~e~l~~i~~~i~~Ak~~G~~V~~~is~~fg~~~~~r~~~e~l 279 (359)
+.+-++...++|+++|++.+.+-| -..+.-.|. .+-.++.+.++++++.+.|+.|- |+.+|-. -+..++.
T Consensus 201 ~L~~~lv~eLeeAGLdRiNlSv~aLDpk~Ak~L~G~-~dYdv~kvle~aE~i~~a~idvl--IaPv~lP----G~ND~E~ 273 (414)
T COG2100 201 LLSKKLVDELEEAGLDRINLSVDALDPKLAKMLAGR-KDYDVKKVLEVAEYIANAGIDVL--IAPVWLP----GVNDDEM 273 (414)
T ss_pred eccHHHHHHHHHhCCceEEeecccCCHHHHHHhcCc-cccCHHHHHHHHHHHHhCCCCEE--EeeeecC----CcChHHH
Confidence 346678888899999999875444 333333342 34457888899999999999874 3333321 3566777
Q ss_pred HHHHHHHHHCCcC--------EEEEcCCCCC----CcHHHHHHHHHHHHH
Q 018252 280 AYVAKELHDMGCF--------EISLGDTIGV----GTPGTVVPMLEAVMA 317 (359)
Q Consensus 280 ~~~a~~l~~~Gad--------~I~L~DT~G~----~~P~~v~~lv~~l~~ 317 (359)
.++++-+.+.|+- .-+++=-.|- +.|..+.++.+.+++
T Consensus 274 ~~iIe~A~~iGaGkk~p~lgiQkyipyk~GRkp~~~k~~~fkeFYrwLre 323 (414)
T COG2100 274 PKIIEWAREIGAGKKWPPLGIQKYIPYKFGRKPVIAKVWPFKEFYRWLRE 323 (414)
T ss_pred HHHHHHHHHhCCCCCCCCcceEEeeeecccCCccccccCcHHHHHHHHHH
Confidence 7788877777753 2344444442 345555555555553
No 262
>PRK12677 xylose isomerase; Provisional
Probab=93.20 E-value=3.1 Score=42.26 Aligned_cols=177 Identities=13% Similarity=0.068 Sum_probs=85.3
Q ss_pred HHHHHHHHHHhCCCCEEEEecc-CCCCCcCCCCC---HHHHHHHhhhcCCCeEEEEeCC----------------h----
Q 018252 149 VKVELIRRLVSSGLPVVEATSF-VSPKWVPQLAD---ARDVMEAVRDLEGARLPVLTPN----------------L---- 204 (359)
Q Consensus 149 ~k~~ia~~L~~aGv~~IEvG~f-vspk~vPq~~D---~~ev~~~l~~~~~~~l~~l~~n----------------~---- 204 (359)
.-.+.++.+.++|++.||+... ..|-..+.... .+++.+.++ -.++++.++++| .
T Consensus 32 ~~~E~v~~~a~~Gf~gVElh~~~l~p~~~~~~~~~~~~~~lk~~l~-~~GL~v~~v~~n~f~~p~~~~g~lts~d~~~R~ 110 (384)
T PRK12677 32 DPVEAVHKLAELGAYGVTFHDDDLVPFGATDAERDRIIKRFKKALD-ETGLVVPMVTTNLFTHPVFKDGAFTSNDRDVRR 110 (384)
T ss_pred CHHHHHHHHHHhCCCEEEecccccCCCCCChhhhHHHHHHHHHHHH-HcCCeeEEEecCCCCCccccCCcCCCCCHHHHH
Confidence 4567788899999999999741 11100010000 223333332 245665554332 1
Q ss_pred -------HhHHHHHHcCCCEEEEecCCc--hHHHHhhhcCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCC--CCC
Q 018252 205 -------KGFEAAIAAGAKEVAIFASAS--EAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPV--EGA 273 (359)
Q Consensus 205 -------~gie~a~~aGv~~V~i~~s~S--~~~~~~n~~~t~~e~l~~i~~~i~~Ak~~G~~V~~~is~~fg~~~--~~r 273 (359)
+.|+.|.+.|++.|.++.... +.....+.....+...+.+..+.++|+++|..|+..|..--..|. .--
T Consensus 111 ~Ai~~~~r~IdlA~eLGa~~Vvv~~G~~g~~~~~~~d~~~a~~~~~eaL~~l~~~A~~~G~gV~laIEpkp~ep~~~~~l 190 (384)
T PRK12677 111 YALRKVLRNIDLAAELGAKTYVMWGGREGAEYDAAKDVRAALDRYREAIDLLAAYVKDQGYDLRFALEPKPNEPRGDILL 190 (384)
T ss_pred HHHHHHHHHHHHHHHhCCCEEEEeeCCCCccCcccCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEccCCCCCCCCeee
Confidence 123455667999988875421 110011111223344456668888898888666666653211111 111
Q ss_pred CCHHHHHHHHHHHHHCCcC-EEE-EcCCCCCCcHH-HHHHHHHHHHHhCCCceEEEEeCCC
Q 018252 274 IPPSKVAYVAKELHDMGCF-EIS-LGDTIGVGTPG-TVVPMLEAVMAVVPVEKLAVHLHDT 331 (359)
Q Consensus 274 ~~~e~l~~~a~~l~~~Gad-~I~-L~DT~G~~~P~-~v~~lv~~l~~~~p~~~L~~H~HNd 331 (359)
.+.+....+++++ |.. .+. .-|+.=..... .+...+..... .+...++|+|+.
T Consensus 191 ~t~~~al~li~~l---g~~~~vGv~lD~gH~~m~g~n~~~~i~~~l~--~~kL~HvHlnD~ 246 (384)
T PRK12677 191 PTVGHALAFIATL---EHPEMVGLNPEVGHEQMAGLNFTHGIAQALW--AGKLFHIDLNGQ 246 (384)
T ss_pred CCHHHHHHHHHHh---CCCccEEEeeechHHHhcCCCHHHHHHHHHh--CCcEEEEEecCC
Confidence 3566666666554 322 243 23542221211 22222322221 134688898884
No 263
>COG1060 ThiH Thiamine biosynthesis enzyme ThiH and related uncharacterized enzymes [Coenzyme metabolism / General function prediction only]
Probab=93.18 E-value=3.2 Score=42.05 Aligned_cols=219 Identities=11% Similarity=0.084 Sum_probs=125.9
Q ss_pred CccEEEeCCC---c-c-cCCCCCCCCCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcCCCCCHHHHHHHhhh-cCCCeEE
Q 018252 125 RFVKIVEVGP---R-D-GLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRD-LEGARLP 198 (359)
Q Consensus 125 ~~V~I~D~TL---R-D-G~Q~~~~~~~~~~k~~ia~~L~~aGv~~IEvG~fvspk~vPq~~D~~ev~~~l~~-~~~~~l~ 198 (359)
.++...+|+. | + |.+ .+..+++++..+.++.+.+.|+..|=+-+..+|...+. -.++.++.+++ .|++.+-
T Consensus 66 TN~C~~~C~fCaF~~~~~~~-~~y~Ls~eeI~~~~~~~~~~G~~Evli~gG~~p~~~~~--y~~~~~~~ik~~~p~~~i~ 142 (370)
T COG1060 66 TNICVNDCTFCAFYRKPGDP-KAYTLSPEEILEEVREAVKRGITEVLIVGGEHPELSLE--YYEELFRTIKEEFPDLHIH 142 (370)
T ss_pred chhhcCCCCccccccCCCCc-cccccCHHHHHHHHHHHHHcCCeEEEEecCcCCCcchH--HHHHHHHHHHHhCcchhhc
Confidence 4555666554 2 1 223 56789999999999999999999998877667643211 12334555553 5666666
Q ss_pred EEeCC------------hH-hHHHHHHcCCCEEEEecCCchHHHHh--hhcCCHHHHHHHHHHHHHHHHhCCCcEEEEEe
Q 018252 199 VLTPN------------LK-GFEAAIAAGAKEVAIFASASEAFSKS--NINCSIEDSLVRYRAVAHAAKVLSIPVRGYVS 263 (359)
Q Consensus 199 ~l~~n------------~~-gie~a~~aGv~~V~i~~s~S~~~~~~--n~~~t~~e~l~~i~~~i~~Ak~~G~~V~~~is 263 (359)
++.+. .+ .+++..++|++.+-... ++++... +..+......+.-.++++.|.++|++..+.+.
T Consensus 143 a~s~~ei~~~~~~~~~s~~E~l~~Lk~aGldsmpg~~--aeil~e~vr~~~~p~K~~~~~wle~~~~Ah~lGI~~tatml 220 (370)
T COG1060 143 ALSAGEILFLAREGGLSYEEVLKRLKEAGLDSMPGGG--AEILSEEVRKIHCPPKKSPEEWLEIHERAHRLGIPTTATML 220 (370)
T ss_pred ccCHHHhHHHHhccCCCHHHHHHHHHHcCCCcCcCcc--eeechHHHHHhhCCCCCCHHHHHHHHHHHHHcCCCccceeE
Confidence 66541 12 37777889988754432 2333321 11111112234455788999999998776665
Q ss_pred eeecCCCCCCCCHHHHHHHHHHHH----HCC-cCEEEE-----cCC---C---CCCcHHHHHHHHHHHHHhCCCceEEEE
Q 018252 264 CVVGCPVEGAIPPSKVAYVAKELH----DMG-CFEISL-----GDT---I---GVGTPGTVVPMLEAVMAVVPVEKLAVH 327 (359)
Q Consensus 264 ~~fg~~~~~r~~~e~l~~~a~~l~----~~G-ad~I~L-----~DT---~---G~~~P~~v~~lv~~l~~~~p~~~L~~H 327 (359)
+|- .-++++.++-...+. +.| ...|.+ +.+ . +-.++.++...++..|-.++. .|...
T Consensus 221 --~Gh----~E~~ed~~~hl~~ir~lQ~~~gg~~~fI~~~f~p~~~~~~~~~~~~~~~~~~l~~iAiaRi~l~~-~i~~~ 293 (370)
T COG1060 221 --LGH----VETREDRIDHLEHIRDLQDETGGFQEFIPLRFRPENGPLPAEVVPEASLEQDLKAIALARIFLDN-NISNI 293 (370)
T ss_pred --EEe----cCCHHHHHHHHHHHHHHHHHhCCcEEEEcccccCCCCCccccCCCCCCHHHHHHHHHHHHHHccC-ccccc
Confidence 543 123555444444333 333 333322 122 1 224455555555555544542 23333
Q ss_pred eCCCCCcHHHHHHHHHHcCCCEEeceee
Q 018252 328 LHDTYGQSLPNILISLQVSPMHAKPCFT 355 (359)
Q Consensus 328 ~HNd~GLAlANalaAv~AGa~~ID~tl~ 355 (359)
-=-.+-+++.-+.+|+.+||+=+.+|+.
T Consensus 294 ~a~w~~~g~~~~~~~l~~GanD~ggt~~ 321 (370)
T COG1060 294 QASWLRDGVILAQAALLSGANDLGGTGY 321 (370)
T ss_pred cCcccccchHHHHHHHHhCcccCcCCCc
Confidence 3345667777788999999998887753
No 264
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=93.18 E-value=2 Score=41.48 Aligned_cols=45 Identities=13% Similarity=0.039 Sum_probs=18.3
Q ss_pred CHHHHHHHHHHHHHCCcCEEEEcCCC-CCCcHHHHHHHHHHHHHhC
Q 018252 275 PPSKVAYVAKELHDMGCFEISLGDTI-GVGTPGTVVPMLEAVMAVV 319 (359)
Q Consensus 275 ~~e~l~~~a~~l~~~Gad~I~L~DT~-G~~~P~~v~~lv~~l~~~~ 319 (359)
+.+...+.++.+.++|+|.+.+.=.. -..+++++.+.++.+.+..
T Consensus 81 ~~~~ai~~a~~a~~~Gad~v~~~~P~y~~~~~~~i~~~~~~v~~a~ 126 (288)
T cd00954 81 NLKESQELAKHAEELGYDAISAITPFYYKFSFEEIKDYYREIIAAA 126 (288)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeCCCCCCCCHHHHHHHHHHHHHhc
Confidence 33444444444444454443321111 1123344444444444444
No 265
>PRK14340 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=93.16 E-value=1.6 Score=45.15 Aligned_cols=142 Identities=13% Similarity=0.136 Sum_probs=87.2
Q ss_pred CCCCHHHHHHHHHHHHhCCCCEEEEec-----cCCCCCcCCCCCHHHHHHHhhhc-CCCeEEEEe--CC---hHhHHHHH
Q 018252 143 NTVPTGVKVELIRRLVSSGLPVVEATS-----FVSPKWVPQLADARDVMEAVRDL-EGARLPVLT--PN---LKGFEAAI 211 (359)
Q Consensus 143 ~~~~~~~k~~ia~~L~~aGv~~IEvG~-----fvspk~vPq~~D~~ev~~~l~~~-~~~~l~~l~--~n---~~gie~a~ 211 (359)
...+.++.++=++.|.+.|++.|.+.. +..+.. ..+..++++.+... ++.++...+ |. .+-++...
T Consensus 176 rsr~~e~Vv~Ei~~l~~~G~~ei~l~~~~~~~y~d~~~---~~~l~~Ll~~l~~~~~~~rir~~~~~p~~l~~ell~~~~ 252 (445)
T PRK14340 176 RSHPFASVLDEVRALAEAGYREITLLGQNVNSYSDPEA---GADFAGLLDAVSRAAPEMRIRFTTSHPKDISESLVRTIA 252 (445)
T ss_pred cCCCHHHHHHHHHHHHHCCCeEEEEeecccchhhccCC---CchHHHHHHHHhhcCCCcEEEEccCChhhcCHHHHHHHH
Confidence 457788999999999999999987742 211110 12344555555432 344544433 42 23355544
Q ss_pred Hc--CCCEEEEec-CCchHHHHhhhcCCHHHHHHHHHHHHHHHHhC--CCcEEEEEeeeecCCCCCCCCHHHHHHHHHHH
Q 018252 212 AA--GAKEVAIFA-SASEAFSKSNINCSIEDSLVRYRAVAHAAKVL--SIPVRGYVSCVVGCPVEGAIPPSKVAYVAKEL 286 (359)
Q Consensus 212 ~a--Gv~~V~i~~-s~S~~~~~~n~~~t~~e~l~~i~~~i~~Ak~~--G~~V~~~is~~fg~~~~~r~~~e~l~~~a~~l 286 (359)
++ |.+.+++.+ +.|+--.+ .+|+.. ..+.+.++++.++++ |+.+.+++. +|.|.+ +.+.+.+.++.+
T Consensus 253 ~~~~g~~~l~iglQSgsd~vLk-~m~R~~--t~~~~~~~v~~lr~~~pgi~i~td~I--vGfPgE---T~edf~~tl~~~ 324 (445)
T PRK14340 253 ARPNICNHIHLPVQSGSSRMLR-RMNRGH--TIEEYLEKIALIRSAIPGVTLSTDLI--AGFCGE---TEEDHRATLSLM 324 (445)
T ss_pred hCCCCCCeEEECCCcCCHHHHH-hcCCCC--CHHHHHHHHHHHHHhCCCCEEeccEE--EECCCC---CHHHHHHHHHHH
Confidence 54 688999865 55554433 355532 245677888888888 998887776 888876 455556666666
Q ss_pred HHCCcCEEE
Q 018252 287 HDMGCFEIS 295 (359)
Q Consensus 287 ~~~Gad~I~ 295 (359)
.+.+.+.+.
T Consensus 325 ~~~~~~~~~ 333 (445)
T PRK14340 325 EEVRFDSAF 333 (445)
T ss_pred HhcCCCEEe
Confidence 666666443
No 266
>PRK08208 coproporphyrinogen III oxidase; Validated
Probab=93.04 E-value=4.1 Score=41.77 Aligned_cols=87 Identities=9% Similarity=-0.026 Sum_probs=61.8
Q ss_pred HhHHHHHHcCCCEEEEecCCchHHHHhhhcCCHHHHHHHHHHHHHHHHhCCCcE-EEEEeeeecCCCCCCCCHHHHHHHH
Q 018252 205 KGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPV-RGYVSCVVGCPVEGAIPPSKVAYVA 283 (359)
Q Consensus 205 ~gie~a~~aGv~~V~i~~s~S~~~~~~n~~~t~~e~l~~i~~~i~~Ak~~G~~V-~~~is~~fg~~~~~r~~~e~l~~~a 283 (359)
+-++...++|+.+|.+-+..-.-.....+|+.. ..+.+.++++.+++.|+++ .+.++ +|.|. -+++.+.+.+
T Consensus 142 e~l~~l~~~G~~rvslGvQS~~~~~L~~l~R~~--~~~~~~~ai~~l~~~g~~~i~~dlI--~GlP~---qt~e~~~~~l 214 (430)
T PRK08208 142 EKLALLAARGVNRLSIGVQSFHDSELHALHRPQ--KRADVHQALEWIRAAGFPILNIDLI--YGIPG---QTHASWMESL 214 (430)
T ss_pred HHHHHHHHcCCCEEEEecccCCHHHHHHhCCCC--CHHHHHHHHHHHHHcCCCeEEEEee--cCCCC---CCHHHHHHHH
Confidence 557777888999998866433222333455532 3556778899999999974 45554 77764 4778888888
Q ss_pred HHHHHCCcCEEEEcC
Q 018252 284 KELHDMGCFEISLGD 298 (359)
Q Consensus 284 ~~l~~~Gad~I~L~D 298 (359)
+.+.+.|++.|.+-.
T Consensus 215 ~~~~~l~~~~is~y~ 229 (430)
T PRK08208 215 DQALVYRPEELFLYP 229 (430)
T ss_pred HHHHhCCCCEEEEcc
Confidence 999999998777654
No 267
>TIGR02990 ectoine_eutA ectoine utilization protein EutA. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti and Silicibacter pomeroyi. It is missing from two other species with the other ectoine transport and utilization genes: Pseudomonas putida and Agrobacterium tumefaciens.
Probab=92.96 E-value=1.9 Score=40.94 Aligned_cols=138 Identities=18% Similarity=0.227 Sum_probs=88.4
Q ss_pred HHHHhCCCCEEEEeccCCCCCcCCCCCHHHHHHHhhh-cCCCeEEEEeCChHhHHHHHHcCCCEEEEecCCchHHHHhhh
Q 018252 155 RRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRD-LEGARLPVLTPNLKGFEAAIAAGAKEVAIFASASEAFSKSNI 233 (359)
Q Consensus 155 ~~L~~aGv~~IEvG~fvspk~vPq~~D~~ev~~~l~~-~~~~~l~~l~~n~~gie~a~~aGv~~V~i~~s~S~~~~~~n~ 233 (359)
..|.+++++.|=.|+-+.. ++ ...+++.+.++. .+++ .+.++...-++...+.|+++|.+..|-.+.-+
T Consensus 65 ~ll~~a~~dvi~~~cTsgs-~~---~G~~~~~~~i~~~~~g~--p~tt~~~A~~~AL~alg~~RIalvTPY~~~v~---- 134 (239)
T TIGR02990 65 LILPDEELDVVAYSCTSAS-VV---IGDDEVTRAINAAKPGT--PVVTPSSAAVDGLAALGVRRISLLTPYTPETS---- 134 (239)
T ss_pred HhcCCCCCCEEEEccchhh-ee---cCHHHHHHHHHhcCCCC--CeeCHHHHHHHHHHHcCCCEEEEECCCcHHHH----
Confidence 3345589999988763221 11 234556666654 2333 33343333344444569999999988544321
Q ss_pred cCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCC---CCCCHHHHHHHHHHHHHCCcCEEEEcCCCCCCcHHHHHH
Q 018252 234 NCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVE---GAIPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVP 310 (359)
Q Consensus 234 ~~t~~e~l~~i~~~i~~Ak~~G~~V~~~is~~fg~~~~---~r~~~e~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~ 310 (359)
..+.++..+.|++|....+ |+..+. .+++|+.+.+.++++...++|.|-+..| -....+
T Consensus 135 -----------~~~~~~l~~~G~eV~~~~~--~~~~~~~~ia~i~p~~i~~~~~~~~~~~aDAifisCT-----nLrt~~ 196 (239)
T TIGR02990 135 -----------RPMAQYFAVRGFEIVNFTC--LGLTDDREMARISPDCIVEAALAAFDPDADALFLSCT-----ALRAAT 196 (239)
T ss_pred -----------HHHHHHHHhCCcEEeeeec--cCCCCCceeeecCHHHHHHHHHHhcCCCCCEEEEeCC-----CchhHH
Confidence 2445666788999865444 565433 4789999999999998889999999864 355667
Q ss_pred HHHHHHHhCC
Q 018252 311 MLEAVMAVVP 320 (359)
Q Consensus 311 lv~~l~~~~p 320 (359)
++..+-+.++
T Consensus 197 vi~~lE~~lG 206 (239)
T TIGR02990 197 CAQRIEQAIG 206 (239)
T ss_pred HHHHHHHHHC
Confidence 7777766553
No 268
>PRK10605 N-ethylmaleimide reductase; Provisional
Probab=92.94 E-value=4.2 Score=40.95 Aligned_cols=141 Identities=13% Similarity=-0.007 Sum_probs=82.8
Q ss_pred HHHHHHcCCCEEEEecC--------CchHHHHh--hhcCCHHHHHHHHHHHHHHHHhC-CCc-EEEEEeee-ecCCCCCC
Q 018252 207 FEAAIAAGAKEVAIFAS--------ASEAFSKS--NINCSIEDSLVRYRAVAHAAKVL-SIP-VRGYVSCV-VGCPVEGA 273 (359)
Q Consensus 207 ie~a~~aGv~~V~i~~s--------~S~~~~~~--n~~~t~~e~l~~i~~~i~~Ak~~-G~~-V~~~is~~-fg~~~~~r 273 (359)
.++|.++|.|-|.+... .|+..++. .+|-|.++=..-+.++++..|+. |-. +..-|+.. ......+-
T Consensus 165 A~rA~~AGfDGVEIh~ahGyLl~qFLSp~~N~RtDeYGGslENR~Rf~~Eiv~aVr~~vg~~~igvRis~~~~~~~~~~G 244 (362)
T PRK10605 165 IANAREAGFDLVELHSAHGYLLHQFLSPSSNQRTDQYGGSVENRARLVLEVVDAGIAEWGADRIGIRISPLGTFNNVDNG 244 (362)
T ss_pred HHHHHHcCCCEEEEcccccchHHHhcCCcCCCCCCcCCCcHHHHHHHHHHHHHHHHHHcCCCeEEEEECCccccccCCCC
Confidence 35677799998877432 23333322 25667777677777777776664 322 33334321 00001222
Q ss_pred CCHHH-HHHHHHHHHHCCcCEEEEcCCCCCCcHHHHHHHHHHHHHhCCCceEEEEeCCCCCcHHHHHHHHHHcC-CCEEe
Q 018252 274 IPPSK-VAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQVS-PMHAK 351 (359)
Q Consensus 274 ~~~e~-l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~lv~~l~~~~p~~~L~~H~HNd~GLAlANalaAv~AG-a~~ID 351 (359)
.++++ ..++++.+.+.|+|-|.+...--...+.-...+.+.+++.++. ++..-.-++ ...+..+++.| ||.|-
T Consensus 245 ~~~~e~~~~~~~~L~~~giD~i~vs~~~~~~~~~~~~~~~~~ik~~~~~-pv~~~G~~~----~~~ae~~i~~G~~D~V~ 319 (362)
T PRK10605 245 PNEEADALYLIEQLGKRGIAYLHMSEPDWAGGEPYSDAFREKVRARFHG-VIIGAGAYT----AEKAETLIGKGLIDAVA 319 (362)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEeccccccCCccccHHHHHHHHHHCCC-CEEEeCCCC----HHHHHHHHHcCCCCEEE
Confidence 56667 7999999999999988876421000111123455778888774 555544433 67788999988 78764
Q ss_pred c
Q 018252 352 P 352 (359)
Q Consensus 352 ~ 352 (359)
.
T Consensus 320 ~ 320 (362)
T PRK10605 320 F 320 (362)
T ss_pred E
Confidence 3
No 269
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=92.92 E-value=6.4 Score=37.31 Aligned_cols=113 Identities=13% Similarity=0.026 Sum_probs=57.2
Q ss_pred HHHHHHcCCCEEEEecCCchHHHHhhhcCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHH
Q 018252 207 FEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKEL 286 (359)
Q Consensus 207 ie~a~~aGv~~V~i~~s~S~~~~~~n~~~t~~e~l~~i~~~i~~Ak~~G~~V~~~is~~fg~~~~~r~~~e~l~~~a~~l 286 (359)
++.|.+.|++.|.+... ............+...+.++++.+.|+++|+.+. +... +.....+++...++++.+
T Consensus 105 i~~a~~lG~~~i~~~~~--~~~~~~~~~~~~~~~~~~l~~l~~~A~~~GV~i~--iE~~---~~~~~~~~~~~~~ll~~v 177 (283)
T PRK13209 105 IQLAQDLGIRVIQLAGY--DVYYEQANNETRRRFIDGLKESVELASRASVTLA--FEIM---DTPFMNSISKALGYAHYL 177 (283)
T ss_pred HHHHHHcCCCEEEECCc--cccccccHHHHHHHHHHHHHHHHHHHHHhCCEEE--Eeec---CCcccCCHHHHHHHHHHh
Confidence 45566679998876321 1000000011233456777889999999998763 3211 111234666666666654
Q ss_pred HHCCcCEEEE-cCCCCCCcHHHHHHHHHHHHHhCCCceEEEEeCCCC
Q 018252 287 HDMGCFEISL-GDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTY 332 (359)
Q Consensus 287 ~~~Gad~I~L-~DT~G~~~P~~v~~lv~~l~~~~p~~~L~~H~HNd~ 332 (359)
+-..+.+ -|+.=...-.. .....++ ...+....+|.+|..
T Consensus 178 ---~~~~lgl~~D~~h~~~~~~--~~~~~i~-~~~~~i~~vHikD~~ 218 (283)
T PRK13209 178 ---NSPWFQLYPDIGNLSAWDN--DVQMELQ-AGIGHIVAFHVKDTK 218 (283)
T ss_pred ---CCCccceEeccchHHHhcC--CHHHHHH-hCcCcEEEEEeccCC
Confidence 4444444 35422111000 1222333 333457889998864
No 270
>COG2089 SpsE Sialic acid synthase [Cell envelope biogenesis, outer membrane]
Probab=92.90 E-value=2.5 Score=42.15 Aligned_cols=78 Identities=14% Similarity=0.071 Sum_probs=47.4
Q ss_pred CCHHHHHHHHHHHHHCCcC-EEEEcCCCCCCcHHHHHHH--HHHHHHhCCCceEEEEeCCCCCcHHHHHHHHHHcCCCEE
Q 018252 274 IPPSKVAYVAKELHDMGCF-EISLGDTIGVGTPGTVVPM--LEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQVSPMHA 350 (359)
Q Consensus 274 ~~~e~l~~~a~~l~~~Gad-~I~L~DT~G~~~P~~v~~l--v~~l~~~~p~~~L~~H~HNd~GLAlANalaAv~AGa~~I 350 (359)
.+.+++.+.++.+.+.|.. .+-|-=|..+-+|.+-..| +..+++.| ++.+|+--| + ++.+..++|+..||.+|
T Consensus 157 a~~~ei~~av~~~r~~g~~~i~LLhC~s~YPap~ed~NL~~i~~l~~~F-n~~vGlSDH-T--~g~~a~l~AvALGA~vi 232 (347)
T COG2089 157 ATIEEIEEAVAILRENGNPDIALLHCTSAYPAPFEDVNLKAIPKLAEAF-NAIVGLSDH-T--LGILAPLAAVALGASVI 232 (347)
T ss_pred ccHHHHHHHHHHHHhcCCCCeEEEEecCCCCCCHHHhhHHHHHHHHHHh-CCccccccC-c--cchhHHHHHHHhcccce
Confidence 3444555555556666653 4444555566666554443 34455566 356666544 2 34888999999999999
Q ss_pred eceee
Q 018252 351 KPCFT 355 (359)
Q Consensus 351 D~tl~ 355 (359)
+==++
T Consensus 233 EKHFt 237 (347)
T COG2089 233 EKHFT 237 (347)
T ss_pred eeeee
Confidence 75443
No 271
>PRK05198 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional
Probab=92.88 E-value=9.6 Score=36.91 Aligned_cols=176 Identities=13% Similarity=0.071 Sum_probs=105.7
Q ss_pred CHHHHHHHHHHHHhCC----CCEEEEecc-----CCCCCcCCCC--CHHHHHHHhhhcCCCeEEEEeCChHhHHHHHHcC
Q 018252 146 PTGVKVELIRRLVSSG----LPVVEATSF-----VSPKWVPQLA--DARDVMEAVRDLEGARLPVLTPNLKGFEAAIAAG 214 (359)
Q Consensus 146 ~~~~k~~ia~~L~~aG----v~~IEvG~f-----vspk~vPq~~--D~~ev~~~l~~~~~~~l~~l~~n~~gie~a~~aG 214 (359)
+.++..++++.|.++| +..+==|+| .+|..+-.+. +--++++.+++.-+..+..=+-+.++++.+.+.
T Consensus 22 s~e~~~~~A~~lk~~~~~~~~~~~fK~sf~KapRTSp~sFqG~G~eeGL~~L~~vk~~~GlpvvTeV~~~~~~~~v~~~- 100 (264)
T PRK05198 22 SRDLALRIAEHLKEITDKLGIPYVFKASFDKANRSSIHSFRGPGLEEGLKILQEVKETFGVPVLTDVHEPEQAAPVAEV- 100 (264)
T ss_pred CHHHHHHHHHHHHHHHHhcCCCeEEeccccCCCCCCCCCCCCCChHHHHHHHHHHHHHHCCceEEEeCCHHHHHHHHhh-
Confidence 5788899999999955 444433333 2343333333 233455555555666666555677889988887
Q ss_pred CCEEEEecCCchHHHHhhhcCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHHCCcCEE
Q 018252 215 AKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEI 294 (359)
Q Consensus 215 v~~V~i~~s~S~~~~~~n~~~t~~e~l~~i~~~i~~Ak~~G~~V~~~is~~fg~~~~~r~~~e~l~~~a~~l~~~Gad~I 294 (359)
+|.+.+-. |+..|+ ++++.+.+.|..|-. = .+--.+|++....++.+.+.|-..|
T Consensus 101 ~DilQIgA-----rn~rn~------------~LL~a~g~t~kpV~l--K------rG~~~t~~e~~~aaeyi~~~Gn~~v 155 (264)
T PRK05198 101 VDVLQIPA-----FLCRQT------------DLLVAAAKTGKVVNI--K------KGQFLAPWDMKNVVDKVREAGNDKI 155 (264)
T ss_pred CcEEEECc-----hhcchH------------HHHHHHhccCCeEEe--c------CCCcCCHHHHHHHHHHHHHcCCCeE
Confidence 78888743 322221 455555566776621 0 1112588999999999999999999
Q ss_pred EEcC---CCCCCcH-HHHHHHHHHHHHhCCCceEEE---Ee-----------CCCCCcHHHHHHHHHHcCCCEE
Q 018252 295 SLGD---TIGVGTP-GTVVPMLEAVMAVVPVEKLAV---HL-----------HDTYGQSLPNILISLQVSPMHA 350 (359)
Q Consensus 295 ~L~D---T~G~~~P-~~v~~lv~~l~~~~p~~~L~~---H~-----------HNd~GLAlANalaAv~AGa~~I 350 (359)
.||. |+|+..- .++.. +..+++ .. .|+-+ |. =-++-+-.+-+.||+.+|||-+
T Consensus 156 ilcERG~tf~y~r~~~D~~~-vp~~k~-~~-lPVi~DpSHsvq~pg~~~~~s~G~r~~v~~la~AAvA~GadGl 226 (264)
T PRK05198 156 ILCERGTSFGYNNLVVDMRG-LPIMRE-TG-APVIFDATHSVQLPGGQGGSSGGQREFVPVLARAAVAVGVAGL 226 (264)
T ss_pred EEEeCCCCcCCCCeeechhh-hHHHhh-CC-CCEEEeCCccccCCCCCCCCCCCcHHHHHHHHHHHHHcCCCEE
Confidence 9987 3332211 11111 233333 22 45555 54 2334456788999999999865
No 272
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=92.87 E-value=1.5 Score=40.94 Aligned_cols=69 Identities=12% Similarity=0.084 Sum_probs=57.5
Q ss_pred CCHHHHHHHHHHHHHCCcCEEEEcCCCCCCcHHHHHHHHHHHHHhCCCceEEEEeCCCCCcHHHHHHHHHHcCCCEEe
Q 018252 274 IPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQVSPMHAK 351 (359)
Q Consensus 274 ~~~e~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~lv~~l~~~~p~~~L~~H~HNd~GLAlANalaAv~AGa~~ID 351 (359)
.++++..++++.+.+.|++.|-+. .-+| ...+.++.+++.+|++.|+...=-|. .-+..|+++||+++=
T Consensus 24 ~~~~~a~~i~~al~~~Gi~~iEit----l~~~-~~~~~I~~l~~~~p~~~IGAGTVl~~----~~a~~a~~aGA~Fiv 92 (212)
T PRK05718 24 NKLEDAVPLAKALVAGGLPVLEVT----LRTP-AALEAIRLIAKEVPEALIGAGTVLNP----EQLAQAIEAGAQFIV 92 (212)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEe----cCCc-cHHHHHHHHHHHCCCCEEEEeeccCH----HHHHHHHHcCCCEEE
Confidence 589999999999999999988877 4556 56678899999999888888766555 667899999999874
No 273
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=92.86 E-value=2.9 Score=41.02 Aligned_cols=98 Identities=19% Similarity=0.152 Sum_probs=44.6
Q ss_pred HHHHHHcCCCEEEEecCCchHHHHhhhcCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHH
Q 018252 207 FEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKEL 286 (359)
Q Consensus 207 ie~a~~aGv~~V~i~~s~S~~~~~~n~~~t~~e~l~~i~~~i~~Ak~~G~~V~~~is~~fg~~~~~r~~~e~l~~~a~~l 286 (359)
++..++.|++-|-+.-++.|.+ ..|.+|-.+-++.+++.+. -.++|.+.+ +..+.+...++++.+
T Consensus 35 v~~li~~Gv~Gi~v~GstGE~~-----~Lt~eEr~~v~~~~~~~~~-grvpvi~Gv---------~~~~t~~ai~~a~~A 99 (309)
T cd00952 35 VERLIAAGVDGILTMGTFGECA-----TLTWEEKQAFVATVVETVA-GRVPVFVGA---------TTLNTRDTIARTRAL 99 (309)
T ss_pred HHHHHHcCCCEEEECcccccch-----hCCHHHHHHHHHHHHHHhC-CCCCEEEEe---------ccCCHHHHHHHHHHH
Confidence 3444445566555555544433 2344444444444444432 123332222 123445555566666
Q ss_pred HHCCcCEEEEcCC-CCCCcHHHHHHHHHHHHHhC
Q 018252 287 HDMGCFEISLGDT-IGVGTPGTVVPMLEAVMAVV 319 (359)
Q Consensus 287 ~~~Gad~I~L~DT-~G~~~P~~v~~lv~~l~~~~ 319 (359)
.++|+|.|-+.=. .-..+++++.+.++.+.+..
T Consensus 100 ~~~Gad~vlv~~P~y~~~~~~~l~~yf~~va~a~ 133 (309)
T cd00952 100 LDLGADGTMLGRPMWLPLDVDTAVQFYRDVAEAV 133 (309)
T ss_pred HHhCCCEEEECCCcCCCCCHHHHHHHHHHHHHhC
Confidence 6666654433322 22234455555555555554
No 274
>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....
Probab=92.83 E-value=0.088 Score=48.76 Aligned_cols=165 Identities=18% Similarity=0.155 Sum_probs=95.2
Q ss_pred HHHHHHHHHHhCCCCEEEE----eccCCCCCcCCCCCHHHHHHHhhhcCCCeE--EEEeCCh-HhHHHHHHcCCCEEEEe
Q 018252 149 VKVELIRRLVSSGLPVVEA----TSFVSPKWVPQLADARDVMEAVRDLEGARL--PVLTPNL-KGFEAAIAAGAKEVAIF 221 (359)
Q Consensus 149 ~k~~ia~~L~~aGv~~IEv----G~fvspk~vPq~~D~~ev~~~l~~~~~~~l--~~l~~n~-~gie~a~~aGv~~V~i~ 221 (359)
.-.+-++.|.++|++.+-+ |.|+ |.+.-..++++.+++..+..+ -.++.|. +-++...++|++.|.+.
T Consensus 13 ~l~~~i~~l~~~g~d~lHiDiMDg~fv-----pn~~~g~~~i~~i~~~~~~~~DvHLMv~~P~~~i~~~~~~g~~~i~~H 87 (201)
T PF00834_consen 13 NLEEEIKRLEEAGADWLHIDIMDGHFV-----PNLTFGPDIIKAIRKITDLPLDVHLMVENPERYIEEFAEAGADYITFH 87 (201)
T ss_dssp GHHHHHHHHHHTT-SEEEEEEEBSSSS-----SSB-B-HHHHHHHHTTSSSEEEEEEESSSGGGHHHHHHHHT-SEEEEE
T ss_pred HHHHHHHHHHHcCCCEEEEeecccccC-----CcccCCHHHHHHHhhcCCCcEEEEeeeccHHHHHHHHHhcCCCEEEEc
Confidence 4456678899999998755 4454 455555566777777665444 3455565 56888899999988775
Q ss_pred cCCchHHHHhhhcCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHHCCcCEEEE--cCC
Q 018252 222 ASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISL--GDT 299 (359)
Q Consensus 222 ~s~S~~~~~~n~~~t~~e~l~~i~~~i~~Ak~~G~~V~~~is~~fg~~~~~r~~~e~l~~~a~~l~~~Gad~I~L--~DT 299 (359)
.-+ .+...++++++|++|+++...|. | .++.+.+.++.. -+|.|-+ .+.
T Consensus 88 ~E~----------------~~~~~~~i~~ik~~g~k~Gialn-----P---~T~~~~~~~~l~-----~vD~VlvMsV~P 138 (201)
T PF00834_consen 88 AEA----------------TEDPKETIKYIKEAGIKAGIALN-----P---ETPVEELEPYLD-----QVDMVLVMSVEP 138 (201)
T ss_dssp GGG----------------TTTHHHHHHHHHHTTSEEEEEE------T---TS-GGGGTTTGC-----CSSEEEEESS-T
T ss_pred ccc----------------hhCHHHHHHHHHHhCCCEEEEEE-----C---CCCchHHHHHhh-----hcCEEEEEEecC
Confidence 431 22344678888999999866553 2 234444333332 3554332 232
Q ss_pred --CCCCcHHHHHHHHHHHHHhC----CCceEEEEeCCCCCcHHHHHHHHHHcCCCEEe
Q 018252 300 --IGVGTPGTVVPMLEAVMAVV----PVEKLAVHLHDTYGQSLPNILISLQVSPMHAK 351 (359)
Q Consensus 300 --~G~~~P~~v~~lv~~l~~~~----p~~~L~~H~HNd~GLAlANalaAv~AGa~~ID 351 (359)
.|-.-=..+.+-++.+++.. .+..|++ |=|.-..|+-...++||+.+=
T Consensus 139 G~~Gq~f~~~~~~KI~~l~~~~~~~~~~~~I~v----DGGI~~~~~~~~~~aGad~~V 192 (201)
T PF00834_consen 139 GFGGQKFIPEVLEKIRELRKLIPENGLDFEIEV----DGGINEENIKQLVEAGADIFV 192 (201)
T ss_dssp TTSSB--HGGHHHHHHHHHHHHHHHTCGSEEEE----ESSESTTTHHHHHHHT--EEE
T ss_pred CCCcccccHHHHHHHHHHHHHHHhcCCceEEEE----ECCCCHHHHHHHHHcCCCEEE
Confidence 33332233445555555433 2356666 567777888899999999763
No 275
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=92.82 E-value=2.7 Score=44.16 Aligned_cols=133 Identities=17% Similarity=0.136 Sum_probs=79.4
Q ss_pred HHHHHHHHHHHHhCCCCEEEEeccCCCCCcCCCCCHHHHHHHhhh-cCCCeEEE-EeCChHhHHHHHHcCCCEEEEec-C
Q 018252 147 TGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRD-LEGARLPV-LTPNLKGFEAAIAAGAKEVAIFA-S 223 (359)
Q Consensus 147 ~~~k~~ia~~L~~aGv~~IEvG~fvspk~vPq~~D~~ev~~~l~~-~~~~~l~~-l~~n~~gie~a~~aGv~~V~i~~-s 223 (359)
.+. ++.++.|.++|++.|++-.. +-. .....+.++.+++ .+++.+.+ -+-+.++.+.++++|++-|.+-+ +
T Consensus 240 ~~~-~~~~~~l~~ag~d~i~id~a-~G~----s~~~~~~i~~ik~~~~~~~v~aG~V~t~~~a~~~~~aGad~I~vg~g~ 313 (495)
T PTZ00314 240 PED-IERAAALIEAGVDVLVVDSS-QGN----SIYQIDMIKKLKSNYPHVDIIAGNVVTADQAKNLIDAGADGLRIGMGS 313 (495)
T ss_pred HHH-HHHHHHHHHCCCCEEEEecC-CCC----chHHHHHHHHHHhhCCCceEEECCcCCHHHHHHHHHcCCCEEEECCcC
Confidence 344 89999999999999998752 100 0112234444443 35655544 23466899999999999887632 2
Q ss_pred CchHHHHhhhcCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHHCCcCEEEEcCC
Q 018252 224 ASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDT 299 (359)
Q Consensus 224 ~S~~~~~~n~~~t~~e~l~~i~~~i~~Ak~~G~~V~~~is~~fg~~~~~r~~~e~l~~~a~~l~~~Gad~I~L~DT 299 (359)
.|--..+...|.... .+..+.++.+.+++.|+.+. ++++-.++.+ +++ +.++||+.+.+.--
T Consensus 314 Gs~~~t~~~~~~g~p-~~~ai~~~~~~~~~~~v~vI---------adGGi~~~~d---i~k-Ala~GA~~Vm~G~~ 375 (495)
T PTZ00314 314 GSICITQEVCAVGRP-QASAVYHVARYARERGVPCI---------ADGGIKNSGD---ICK-ALALGADCVMLGSL 375 (495)
T ss_pred CcccccchhccCCCC-hHHHHHHHHHHHhhcCCeEE---------ecCCCCCHHH---HHH-HHHcCCCEEEECch
Confidence 211111111222222 24566677788888888762 2455566654 444 34489999887643
No 276
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=92.81 E-value=3.1 Score=36.73 Aligned_cols=108 Identities=22% Similarity=0.309 Sum_probs=67.0
Q ss_pred HHHHHHHHhCCCCEEEEeccCCCCCcCCCCCHHHHHHHhhhcCCCeEEEEeCChHhHHHHHHcCCCEEEEecCCchHHHH
Q 018252 151 VELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPVLTPNLKGFEAAIAAGAKEVAIFASASEAFSK 230 (359)
Q Consensus 151 ~~ia~~L~~aGv~~IEvG~fvspk~vPq~~D~~ev~~~l~~~~~~~l~~l~~n~~gie~a~~aGv~~V~i~~s~S~~~~~ 230 (359)
.-+++.|.++|+++|-.|.+.+| +|+ ++.|++..++.|.++. .+.
T Consensus 30 kvia~~l~d~GfeVi~~g~~~tp---------~e~---------------------v~aA~~~dv~vIgvSs-l~g---- 74 (143)
T COG2185 30 KVIARALADAGFEVINLGLFQTP---------EEA---------------------VRAAVEEDVDVIGVSS-LDG---- 74 (143)
T ss_pred HHHHHHHHhCCceEEecCCcCCH---------HHH---------------------HHHHHhcCCCEEEEEe-ccc----
Confidence 34678899999999988887654 333 3445555566665532 112
Q ss_pred hhhcCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHHCCcCEEEEcCCCCCCcHHHHHH
Q 018252 231 SNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVP 310 (359)
Q Consensus 231 ~n~~~t~~e~l~~i~~~i~~Ak~~G~~V~~~is~~fg~~~~~r~~~e~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~ 310 (359)
.....+..+++.+++.|..-.. + .. ++..+++. .+.+.++|+++|.-+.|. ..+.+..
T Consensus 75 --------~h~~l~~~lve~lre~G~~~i~-v--~~----GGvip~~d----~~~l~~~G~~~if~pgt~---~~~~~~~ 132 (143)
T COG2185 75 --------GHLTLVPGLVEALREAGVEDIL-V--VV----GGVIPPGD----YQELKEMGVDRIFGPGTP---IEEALSD 132 (143)
T ss_pred --------hHHHHHHHHHHHHHHhCCcceE-E--ee----cCccCchh----HHHHHHhCcceeeCCCCC---HHHHHHH
Confidence 2345567888889999986422 1 12 24566665 566788999999977543 3344444
Q ss_pred HHHHH
Q 018252 311 MLEAV 315 (359)
Q Consensus 311 lv~~l 315 (359)
++..+
T Consensus 133 v~~~l 137 (143)
T COG2185 133 LLTRL 137 (143)
T ss_pred HHHHH
Confidence 44433
No 277
>PRK13745 anaerobic sulfatase-maturase; Provisional
Probab=92.78 E-value=12 Score=38.16 Aligned_cols=142 Identities=13% Similarity=0.052 Sum_probs=82.0
Q ss_pred CCCCHHHHHHHHHHHHhC-CCCEEEEecc-CCCCCcCCCCC---HHHHHHHhhh---cCCCeEEEEeC----ChHhHHHH
Q 018252 143 NTVPTGVKVELIRRLVSS-GLPVVEATSF-VSPKWVPQLAD---ARDVMEAVRD---LEGARLPVLTP----NLKGFEAA 210 (359)
Q Consensus 143 ~~~~~~~k~~ia~~L~~a-Gv~~IEvG~f-vspk~vPq~~D---~~ev~~~l~~---~~~~~l~~l~~----n~~gie~a 210 (359)
..++.+.-.++++.+.+. |+..+.+.+. -. |-+.. ..++.+.+++ ..++.+...+= +.+-++..
T Consensus 46 ~~ms~e~~~~~i~~~~~~~~~~~v~i~f~GGE----PlL~~~~~~~~~~~~~~~~~~~~~i~~~i~TNG~ll~~e~~~~l 121 (412)
T PRK13745 46 HVMSDELLEKFIKEYINSQTMPQVLFTWHGGE----TLMRPLSFYKKALELQKKYARGRQIDNCIQTNGTLLTDEWCEFF 121 (412)
T ss_pred CCCCHHHHHHHHHHHHHcCCCCeEEEEEEccc----cCCCcHHHHHHHHHHHHHHcCCCceEEEEeecCEeCCHHHHHHH
Confidence 358999988999888765 7788888652 22 33432 2233344332 22333332221 23345555
Q ss_pred HHcCCCEEEEecCCc-hHHHHhhhcCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHHC
Q 018252 211 IAAGAKEVAIFASAS-EAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDM 289 (359)
Q Consensus 211 ~~aGv~~V~i~~s~S-~~~~~~n~~~t~~e~l~~i~~~i~~Ak~~G~~V~~~is~~fg~~~~~r~~~e~l~~~a~~l~~~ 289 (359)
.+.++ .|.+.+... +.|........-...++++.+.++.++++|+.+.+ .+++. +...+++.++.+.+.+.
T Consensus 122 ~~~~~-~v~ISlDG~~~~hD~~R~~~~g~gsf~~v~~~i~~l~~~gi~~~i--~~vv~-----~~n~~~~~e~~~~~~~l 193 (412)
T PRK13745 122 RENNF-LVGVSIDGPQEFHDEYRKNKMGKPSFVKVMKGINLLKKHGVEWNA--MAVVN-----DFNADYPLDFYHFFKEL 193 (412)
T ss_pred HHcCe-EEEEEecCCHHHhhhhcCCCCCCccHHHHHHHHHHHHHcCCCEEE--EEEEc-----CCccccHHHHHHHHHHc
Confidence 66775 777765433 34443221111123566677777888888987643 32332 44556777888888899
Q ss_pred CcCEEEE
Q 018252 290 GCFEISL 296 (359)
Q Consensus 290 Gad~I~L 296 (359)
|++.+.+
T Consensus 194 g~~~~~~ 200 (412)
T PRK13745 194 DCHYIQF 200 (412)
T ss_pred CCCeEEE
Confidence 9987765
No 278
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=92.78 E-value=0.69 Score=44.06 Aligned_cols=102 Identities=13% Similarity=0.034 Sum_probs=70.2
Q ss_pred HHHHHHHHHHhCCCcEEEEEeeeecC-CCCCCCCHHHHHHHHHHHHHCCcCEEEEcCCCCCCcHHHHHHHHHHHHHh-CC
Q 018252 243 RYRAVAHAAKVLSIPVRGYVSCVVGC-PVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAV-VP 320 (359)
Q Consensus 243 ~i~~~i~~Ak~~G~~V~~~is~~fg~-~~~~r~~~e~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~lv~~l~~~-~p 320 (359)
.+++.++.|+++|+.|. +|. ..+-.+....+.++.+.+.+.|.+.|-+.|..--+...+-.++|+.++++ +.
T Consensus 42 ~l~eki~la~~~~V~v~------~GGtl~E~~~~q~~~~~Yl~~~k~lGf~~IEiS~G~~~i~~~~~~rlI~~~~~~g~~ 115 (237)
T TIGR03849 42 IVKEKIEMYKDYGIKVY------PGGTLFEIAHSKGKFDEYLNECDELGFEAVEISDGSMEISLEERCNLIERAKDNGFM 115 (237)
T ss_pred HHHHHHHHHHHcCCeEe------CCccHHHHHHHhhhHHHHHHHHHHcCCCEEEEcCCccCCCHHHHHHHHHHHHhCCCe
Confidence 36788999999999872 332 11112233566777789999999999999999999999999999999975 21
Q ss_pred -CceEEEEeCCC---C--CcHHHHHHHHHHcCCCEE
Q 018252 321 -VEKLAVHLHDT---Y--GQSLPNILISLQVSPMHA 350 (359)
Q Consensus 321 -~~~L~~H~HNd---~--GLAlANalaAv~AGa~~I 350 (359)
-..++...... . ..-+-.+-..++|||++|
T Consensus 116 v~~EvG~K~~~~~~~~~~~~~i~~~~~~LeAGA~~V 151 (237)
T TIGR03849 116 VLSEVGKKSPEKDSELTPDDRIKLINKDLEAGADYV 151 (237)
T ss_pred EeccccccCCcccccCCHHHHHHHHHHHHHCCCcEE
Confidence 11344443311 1 122335566799999986
No 279
>COG1830 FbaB DhnA-type fructose-1,6-bisphosphate aldolase and related enzymes [Carbohydrate transport and metabolism]
Probab=92.72 E-value=2.2 Score=41.23 Aligned_cols=123 Identities=19% Similarity=0.222 Sum_probs=76.3
Q ss_pred hHHHHHHcCCCEEEEecCCchHHHHhhhcC-CHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCC----C--CCCHHH
Q 018252 206 GFEAAIAAGAKEVAIFASASEAFSKSNINC-SIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVE----G--AIPPSK 278 (359)
Q Consensus 206 gie~a~~aGv~~V~i~~s~S~~~~~~n~~~-t~~e~l~~i~~~i~~Ak~~G~~V~~~is~~fg~~~~----~--r~~~e~ 278 (359)
.+|.|+..|++-|.+.+ ++|. +-.+.++.+.++++.|.++|+.+.. |..|.. . ..+++.
T Consensus 102 ~ve~ai~lgadAV~~~V---------y~Gse~e~~~i~~~~~v~~~a~~~Gmp~v~-----~~YpRg~~~~~~~~~d~~~ 167 (265)
T COG1830 102 TVEDAIRLGADAVGATV---------YVGSETEREMIENISQVVEDAHELGMPLVA-----WAYPRGPAIKDEYHRDADL 167 (265)
T ss_pred eHHHHHhCCCcEEEEEE---------ecCCcchHHHHHHHHHHHHHHHHcCCceEE-----EEeccCCcccccccccHHH
Confidence 57899999999765533 1221 2357899999999999999998743 222221 1 367888
Q ss_pred HHHHHHHHHHCCcCEEEEcCCCCCCcHHHHHHHHHHHHHhCCCceEEEEe---CCCCCcHHHHHHHHHHcCCCEE
Q 018252 279 VAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHL---HDTYGQSLPNILISLQVSPMHA 350 (359)
Q Consensus 279 l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~lv~~l~~~~p~~~L~~H~---HNd~GLAlANalaAv~AGa~~I 350 (359)
+...++...++|+|.|-..=| ..|+.+++.++. -| +++-.-+ =++.--.+.-.-.|+++|+.-+
T Consensus 168 v~~aaRlaaelGADIiK~~yt---g~~e~F~~vv~~----~~-vpVviaGG~k~~~~~~~l~~~~~ai~aGa~G~ 234 (265)
T COG1830 168 VGYAARLAAELGADIIKTKYT---GDPESFRRVVAA----CG-VPVVIAGGPKTETEREFLEMVTAAIEAGAMGV 234 (265)
T ss_pred HHHHHHHHHHhcCCeEeecCC---CChHHHHHHHHh----CC-CCEEEeCCCCCCChHHHHHHHHHHHHccCcch
Confidence 888999999999998764322 133444444433 23 2332221 1233445666666777776544
No 280
>PRK14327 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=92.71 E-value=6.2 Score=41.64 Aligned_cols=145 Identities=14% Similarity=0.164 Sum_probs=84.0
Q ss_pred CCCCHHHHHHHHHHHHhCCCCEEEEec--c-CCCCCcCCC-CCHHHHHHHhhhc--CCCeEEEEeCC---hHhHHHHHHc
Q 018252 143 NTVPTGVKVELIRRLVSSGLPVVEATS--F-VSPKWVPQL-ADARDVMEAVRDL--EGARLPVLTPN---LKGFEAAIAA 213 (359)
Q Consensus 143 ~~~~~~~k~~ia~~L~~aGv~~IEvG~--f-vspk~vPq~-~D~~ev~~~l~~~--~~~~l~~l~~n---~~gie~a~~a 213 (359)
...+.++.++-++.|.+.|++.|.+.. + ...+..... ....++++.+... +.+++...-|. .+-++...++
T Consensus 239 Rsr~~e~Ii~Ei~~l~~~G~keI~L~g~n~~~yg~d~~~~~~~l~~Ll~~I~~~~i~~ir~~s~~P~~i~deli~~m~~~ 318 (509)
T PRK14327 239 RSRRPEDIIQEVRHLARQGYKEITLLGQNVNAYGKDFEDIEYGLGDLMDEIRKIDIPRVRFTTSHPRDFDDHLIEVLAKG 318 (509)
T ss_pred eeCCHHHHHHHHHHHHHCCCcEEEEEeeccccCcccccccchHHHHHHHHHHhCCCceEEEeecCcccCCHHHHHHHHhc
Confidence 357789999999999999999887643 1 111100000 1234555555543 33444433342 2345666667
Q ss_pred C--CCEEEEec-CCchHHHHhhhcCCHHHHHHHHHHHHHHHHhC--CCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHH
Q 018252 214 G--AKEVAIFA-SASEAFSKSNINCSIEDSLVRYRAVAHAAKVL--SIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHD 288 (359)
Q Consensus 214 G--v~~V~i~~-s~S~~~~~~n~~~t~~e~l~~i~~~i~~Ak~~--G~~V~~~is~~fg~~~~~r~~~e~l~~~a~~l~~ 288 (359)
| ++.+++.+ +.|+--. ..+|+.. ..+.+.++++.++++ |+.+...+. +|.|.+ +.+.+.+.++.+.+
T Consensus 319 g~~~~~l~lgvQSgsd~vL-k~M~R~~--t~e~~~~~v~~lr~~~p~i~i~tdiI--vGfPgE---T~edf~~Tl~~v~~ 390 (509)
T PRK14327 319 GNLVEHIHLPVQSGSTEVL-KIMARKY--TRESYLELVRKIKEAIPNVALTTDII--VGFPNE---TDEQFEETLSLYRE 390 (509)
T ss_pred CCccceEEeccCCCCHHHH-HhcCCCC--CHHHHHHHHHHHHHhCCCcEEeeeEE--EeCCCC---CHHHHHHHHHHHHH
Confidence 7 57888866 4444433 3355432 134566788888887 455555554 887766 55666666666667
Q ss_pred CCcCEEE
Q 018252 289 MGCFEIS 295 (359)
Q Consensus 289 ~Gad~I~ 295 (359)
.+.+.+.
T Consensus 391 l~~d~~~ 397 (509)
T PRK14327 391 VGFDHAY 397 (509)
T ss_pred cCCCeEE
Confidence 7776544
No 281
>TIGR03551 F420_cofH 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofH subunit. This enzyme, together with CofG, complete the biosynthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, the chromophore of coenzyme F420. The chromophore is also used in cyanobacteria DNA photolyases.
Probab=92.70 E-value=0.49 Score=46.96 Aligned_cols=80 Identities=18% Similarity=0.085 Sum_probs=59.6
Q ss_pred CCCHHHHHHHHHHHHHCCcCEEEEcCC-CCCCcHHHHHHHHHHHHHhCCCceEEE-------EeCCCCCcHHHHHHHHH-
Q 018252 273 AIPPSKVAYVAKELHDMGCFEISLGDT-IGVGTPGTVVPMLEAVMAVVPVEKLAV-------HLHDTYGQSLPNILISL- 343 (359)
Q Consensus 273 r~~~e~l~~~a~~l~~~Gad~I~L~DT-~G~~~P~~v~~lv~~l~~~~p~~~L~~-------H~HNd~GLAlANalaAv- 343 (359)
+.+++++.+.++.+.+.|+.+|.|.+- .-...+..+.++++.+++..|++.+.. |+|.+.|+-..-.+..+
T Consensus 69 ~ls~eeI~e~~~~~~~~G~~~i~l~gG~~p~~~~~~~~~i~~~Ik~~~~~i~~~~~t~~ei~~~~~~~g~~~~e~l~~Lk 148 (343)
T TIGR03551 69 LLSLEEIAERAAEAWKAGATEVCIQGGIHPDLDGDFYLDILRAVKEEVPGMHIHAFSPMEVYYGARNSGLSVEEALKRLK 148 (343)
T ss_pred cCCHHHHHHHHHHHHHCCCCEEEEEeCCCCCCCHHHHHHHHHHHHHHCCCceEEecCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 369999999999999999999999832 223456778999999999888644321 34677888766655444
Q ss_pred HcCCCEEec
Q 018252 344 QVSPMHAKP 352 (359)
Q Consensus 344 ~AGa~~ID~ 352 (359)
+||++.+..
T Consensus 149 eAGl~~i~~ 157 (343)
T TIGR03551 149 EAGLDSMPG 157 (343)
T ss_pred HhCcccccC
Confidence 569998863
No 282
>PRK10481 hypothetical protein; Provisional
Probab=92.69 E-value=2.6 Score=39.79 Aligned_cols=138 Identities=25% Similarity=0.266 Sum_probs=82.2
Q ss_pred EeCCCcccCCCCCCCCCHHH----HHHHHHHHHhCCCCEEEEeccCC-CCCcCCCCCHHHHHHHhhhcCCCeEEEEeCC-
Q 018252 130 VEVGPRDGLQNEKNTVPTGV----KVELIRRLVSSGLPVVEATSFVS-PKWVPQLADARDVMEAVRDLEGARLPVLTPN- 203 (359)
Q Consensus 130 ~D~TLRDG~Q~~~~~~~~~~----k~~ia~~L~~aGv~~IEvG~fvs-pk~vPq~~D~~ev~~~l~~~~~~~l~~l~~n- 203 (359)
+=+-||||.|.- ++.+. -.+.++.|++.|++.|=+.++.. |. +.-. +...+.|.
T Consensus 58 lvtrL~dG~~v~---~s~~~v~~~lq~~i~~l~~~g~d~ivl~Ctgdfp~----l~a~-------------r~~l~~P~~ 117 (224)
T PRK10481 58 LVTRLNDGQQVH---VSKQKVERDLQSVIEVLDNQGYDVILLLCTGEFPS----LTAR-------------NAILLEPSR 117 (224)
T ss_pred eEEEecCCCEEE---EEHHHHHHHHHHHHHHHHhCCCCEEEEEecCCCCC----cccc-------------CccccCchh
Confidence 334599999885 44433 34556678999999998887543 32 1110 11111121
Q ss_pred -hHhHHHHHHcCCCEEEEecCCchHHHHhhhcCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHH
Q 018252 204 -LKGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYV 282 (359)
Q Consensus 204 -~~gie~a~~aGv~~V~i~~s~S~~~~~~n~~~t~~e~l~~i~~~i~~Ak~~G~~V~~~is~~fg~~~~~r~~~e~l~~~ 282 (359)
...+-.|+..| ++|.+..|..+.- ....++-+..|++++... ..|+ ..+++.+.+.
T Consensus 118 ~i~~lv~Al~~g-~riGVitP~~~qi----------------~~~~~kw~~~G~~v~~~~----aspy--~~~~~~l~~a 174 (224)
T PRK10481 118 ILPPLVAAIVGG-HQVGVIVPVEEQL----------------AQQAQKWQVLQKPPVFAL----ASPY--HGSEEELIDA 174 (224)
T ss_pred hHHHHHHHhcCC-CeEEEEEeCHHHH----------------HHHHHHHHhcCCceeEee----cCCC--CCCHHHHHHH
Confidence 13334444333 8888888753321 122233445599886322 2344 2677899999
Q ss_pred HHHHHHCCcCEEEEcCCCCCCcHHHHHHHHH
Q 018252 283 AKELHDMGCFEISLGDTIGVGTPGTVVPMLE 313 (359)
Q Consensus 283 a~~l~~~Gad~I~L~DT~G~~~P~~v~~lv~ 313 (359)
++++.+.|+|.|.+ |-+|+.+ ++++.++
T Consensus 175 a~~L~~~gaD~Ivl-~C~G~~~--~~~~~le 202 (224)
T PRK10481 175 GKELLDQGADVIVL-DCLGYHQ--RHRDLLQ 202 (224)
T ss_pred HHHhhcCCCCEEEE-eCCCcCH--HHHHHHH
Confidence 99999999998875 6777777 4444443
No 283
>TIGR03821 AblA_like_1 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in E. coli, Buchnera, Yersinia, etc.
Probab=92.68 E-value=11 Score=37.26 Aligned_cols=159 Identities=13% Similarity=0.108 Sum_probs=94.0
Q ss_pred CCCHHHHHHHHHHHHh-CCCCEEEEeccCCCCCcCCCCC--HHHHHHHhhhcCC---Ce----EEEEeCCh---HhHHHH
Q 018252 144 TVPTGVKVELIRRLVS-SGLPVVEATSFVSPKWVPQLAD--ARDVMEAVRDLEG---AR----LPVLTPNL---KGFEAA 210 (359)
Q Consensus 144 ~~~~~~k~~ia~~L~~-aGv~~IEvG~fvspk~vPq~~D--~~ev~~~l~~~~~---~~----l~~l~~n~---~gie~a 210 (359)
.++.++-.+++..+.+ .|+..|=++.. .|-. ..| ..++++.+..++. .+ +.++.|+. +-++..
T Consensus 124 ~~~~~~~~~~i~~i~~~~~i~~VvltGG-EPL~---~~d~~L~~ll~~l~~i~~~~~iri~tr~~~~~p~rit~el~~~L 199 (321)
T TIGR03821 124 QPNKAQWKEALEYIAQHPEINEVILSGG-DPLM---AKDHRLDWLLNLLEQIPHLKRLRIHTRLPVVIPDRITSGLCDLL 199 (321)
T ss_pred CCCHHHHHHHHHHHHhcCCCCEEEEeCc-cccc---CCchHHHHHHHHHHhCCCCcEEEEecCcceeeHHHhhHHHHHHH
Confidence 4567777777877775 48887766542 2210 123 3445555554433 22 23455553 234444
Q ss_pred HHcCCCEEEEecCCchHHHHhhhcCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHHCC
Q 018252 211 IAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMG 290 (359)
Q Consensus 211 ~~aGv~~V~i~~s~S~~~~~~n~~~t~~e~l~~i~~~i~~Ak~~G~~V~~~is~~fg~~~~~r~~~e~l~~~a~~l~~~G 290 (359)
..+|.+.+.+ ++.+.. .|.-+.+.++++.+++.|+.+..... .-. +=..+++.+.++++.+.++|
T Consensus 200 ~~~~~~~~~~-~h~dh~----------~Ei~d~~~~ai~~L~~~Gi~v~~qtv--llk--giNDn~~~l~~L~~~l~~~g 264 (321)
T TIGR03821 200 ANSRLQTVLV-VHINHA----------NEIDAEVADALAKLRNAGITLLNQSV--LLR--GVNDNADTLAALSERLFDAG 264 (321)
T ss_pred HhcCCcEEEE-eeCCCh----------HhCcHHHHHHHHHHHHcCCEEEecce--eeC--CCCCCHHHHHHHHHHHHHcC
Confidence 4567665532 121111 12223456788888999998743221 110 00237889999999999999
Q ss_pred cCE--EEEcCCCCC-----CcHHHHHHHHHHHHHhCCC
Q 018252 291 CFE--ISLGDTIGV-----GTPGTVVPMLEAVMAVVPV 321 (359)
Q Consensus 291 ad~--I~L~DT~G~-----~~P~~v~~lv~~l~~~~p~ 321 (359)
+.. +..+|-+|- ..+++..++++.+++..++
T Consensus 265 v~pyyl~~~~p~gg~~~f~v~~~~~~~i~~~l~~~~sG 302 (321)
T TIGR03821 265 VLPYYLHLLDKVQGAAHFDVDDERARALMAELLARLPG 302 (321)
T ss_pred CeeCcccccCCCCCcccccCCHHHHHHHHHHHHHhCCC
Confidence 864 445676664 3578999999999998765
No 284
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=92.67 E-value=0.43 Score=48.86 Aligned_cols=70 Identities=14% Similarity=0.064 Sum_probs=55.2
Q ss_pred HHHHHHHHHHCCcCEEEEcCCCCCCcHHHHHHHHHHHHHhCCCceEEEEeCCCCCcHHHHHHHHHHcCCCEEecee
Q 018252 279 VAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQVSPMHAKPCF 354 (359)
Q Consensus 279 l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~lv~~l~~~~p~~~L~~H~HNd~GLAlANalaAv~AGa~~ID~tl 354 (359)
..+.++++.++|+|.|.| |+.. ..+..+.++++.+++.+|++.|-+..=-+ ...+..++++|||.|-+.+
T Consensus 154 ~~~~v~~lv~aGvDvI~i-D~a~-g~~~~~~~~v~~ik~~~p~~~vi~g~V~T----~e~a~~l~~aGaD~I~vG~ 223 (404)
T PRK06843 154 TIERVEELVKAHVDILVI-DSAH-GHSTRIIELVKKIKTKYPNLDLIAGNIVT----KEAALDLISVGADCLKVGI 223 (404)
T ss_pred HHHHHHHHHhcCCCEEEE-ECCC-CCChhHHHHHHHHHhhCCCCcEEEEecCC----HHHHHHHHHcCCCEEEECC
Confidence 567888999999999997 6665 45789999999999999987665543333 4667789999999997543
No 285
>PRK14024 phosphoribosyl isomerase A; Provisional
Probab=92.64 E-value=8.9 Score=36.15 Aligned_cols=158 Identities=15% Similarity=0.090 Sum_probs=86.2
Q ss_pred HHHHHHHHHHhCCCCEEEEeccCCCCCcCCCCCHHHHHHHhhhcCCC--eEEEEeCChHhHHHHHHcCCCEEEEecCCch
Q 018252 149 VKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGA--RLPVLTPNLKGFEAAIAAGAKEVAIFASASE 226 (359)
Q Consensus 149 ~k~~ia~~L~~aGv~~IEvG~fvspk~vPq~~D~~ev~~~l~~~~~~--~l~~l~~n~~gie~a~~aGv~~V~i~~s~S~ 226 (359)
+-+++++.+.+.|++.|-+-=..... ......++++.+.+.-+. .+-+=+++.+++++++.+|++.+.+-..
T Consensus 33 dp~~~a~~~~~~g~~~l~ivDLd~~~---g~~~n~~~i~~i~~~~~~pv~vgGGirs~edv~~~l~~Ga~kvviGs~--- 106 (241)
T PRK14024 33 SPLDAALAWQRDGAEWIHLVDLDAAF---GRGSNRELLAEVVGKLDVKVELSGGIRDDESLEAALATGCARVNIGTA--- 106 (241)
T ss_pred CHHHHHHHHHHCCCCEEEEEeccccC---CCCccHHHHHHHHHHcCCCEEEcCCCCCHHHHHHHHHCCCCEEEECch---
Confidence 66789999999999987554221111 111222344444332233 3344567889999999999998765221
Q ss_pred HHHHhhhcCCHHHHHHHHHHHHHHHHhCCCcEEEEEee---eecCCCCCCCCHHHHHHHHHHHHHCCcCEEEEcCC--CC
Q 018252 227 AFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSC---VVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDT--IG 301 (359)
Q Consensus 227 ~~~~~n~~~t~~e~l~~i~~~i~~Ak~~G~~V~~~is~---~fg~~~~~r~~~e~l~~~a~~l~~~Gad~I~L~DT--~G 301 (359)
.+ +..+.+.++++...+. +...+-. .+-. .+..-+...+.++++.+.++|++.|.+-|- .|
T Consensus 107 ~l----------~~p~l~~~i~~~~~~~---i~vsld~~~~~v~~-~Gw~~~~~~~~~~~~~l~~~G~~~iiv~~~~~~g 172 (241)
T PRK14024 107 AL----------ENPEWCARVIAEHGDR---VAVGLDVRGHTLAA-RGWTRDGGDLWEVLERLDSAGCSRYVVTDVTKDG 172 (241)
T ss_pred Hh----------CCHHHHHHHHHHhhhh---EEEEEEEeccEecc-CCeeecCccHHHHHHHHHhcCCCEEEEEeecCCC
Confidence 21 1122334444433322 2111110 0000 000113346778999999999998877665 34
Q ss_pred CCcHHHHHHHHHHHHHhCCCceEEEEe
Q 018252 302 VGTPGTVVPMLEAVMAVVPVEKLAVHL 328 (359)
Q Consensus 302 ~~~P~~v~~lv~~l~~~~p~~~L~~H~ 328 (359)
...... .++++.+++..+ +|+-.-+
T Consensus 173 ~~~G~d-~~~i~~i~~~~~-ipviasG 197 (241)
T PRK14024 173 TLTGPN-LELLREVCARTD-APVVASG 197 (241)
T ss_pred CccCCC-HHHHHHHHhhCC-CCEEEeC
Confidence 444433 566677777654 5666533
No 286
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=92.59 E-value=8.8 Score=35.73 Aligned_cols=181 Identities=12% Similarity=0.075 Sum_probs=98.5
Q ss_pred HHHHHHHHHHHhCCCCEEEEeccCCCCCcCCCCCHHHHHHHhhhcCCCeEEE--EeCChHhHHHHHHcCCCEEEEecCCc
Q 018252 148 GVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPV--LTPNLKGFEAAIAAGAKEVAIFASAS 225 (359)
Q Consensus 148 ~~k~~ia~~L~~aGv~~IEvG~fvspk~vPq~~D~~ev~~~l~~~~~~~l~~--l~~n~~gie~a~~aGv~~V~i~~s~S 225 (359)
..-+++++.+.+.|++.+.+=-...... ....+.+.+.+..+.. ++.+.+ =++..++++.++++|++.|.+-..
T Consensus 32 ~~~~e~a~~~~~~G~~~l~i~dl~~~~~-~~~~~~~~i~~i~~~~-~~~l~v~GGi~~~~~~~~~~~~Ga~~v~iGs~-- 107 (241)
T PRK13585 32 GDPVEVAKRWVDAGAETLHLVDLDGAFE-GERKNAEAIEKIIEAV-GVPVQLGGGIRSAEDAASLLDLGVDRVILGTA-- 107 (241)
T ss_pred CCHHHHHHHHHHcCCCEEEEEechhhhc-CCcccHHHHHHHHHHc-CCcEEEcCCcCCHHHHHHHHHcCCCEEEEChH--
Confidence 3577889999999999985543211100 0112344444444433 333322 235778999999999999887322
Q ss_pred hHHHHhhhcCCHHHHHHHHHHHHHHHHhCCC-cEEEEEeeeecCC---CCCCC-CHHHHHHHHHHHHHCCcCEEEEcCC-
Q 018252 226 EAFSKSNINCSIEDSLVRYRAVAHAAKVLSI-PVRGYVSCVVGCP---VEGAI-PPSKVAYVAKELHDMGCFEISLGDT- 299 (359)
Q Consensus 226 ~~~~~~n~~~t~~e~l~~i~~~i~~Ak~~G~-~V~~~is~~fg~~---~~~r~-~~e~l~~~a~~l~~~Gad~I~L~DT- 299 (359)
.+ +..+.+.++++ ..|- .+.+.+.+ ...+ .+... +...+.++++.+.++|++.|.+-|+
T Consensus 108 -~~----------~~~~~~~~i~~---~~g~~~i~~sid~-~~~~v~~~g~~~~~~~~~~~~~~~~~~~G~~~i~~~~~~ 172 (241)
T PRK13585 108 -AV----------ENPEIVRELSE---EFGSERVMVSLDA-KDGEVVIKGWTEKTGYTPVEAAKRFEELGAGSILFTNVD 172 (241)
T ss_pred -Hh----------hChHHHHHHHH---HhCCCcEEEEEEe-eCCEEEECCCcccCCCCHHHHHHHHHHcCCCEEEEEeec
Confidence 11 01122233332 2332 23223321 0000 00011 1124577888889999999998776
Q ss_pred -CCCCcHHHHHHHHHHHHHhCCCceEEEEeCCCCCcHHHHHHHHHHcCCCEEec
Q 018252 300 -IGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQVSPMHAKP 352 (359)
Q Consensus 300 -~G~~~P~~v~~lv~~l~~~~p~~~L~~H~HNd~GLAlANalaAv~AGa~~ID~ 352 (359)
.|...+.. .++++.+.+.++ +|+-.-+.=. ...++....++||+.|=+
T Consensus 173 ~~g~~~g~~-~~~i~~i~~~~~-iPvia~GGI~---~~~di~~~~~~Ga~gv~v 221 (241)
T PRK13585 173 VEGLLEGVN-TEPVKELVDSVD-IPVIASGGVT---TLDDLRALKEAGAAGVVV 221 (241)
T ss_pred CCCCcCCCC-HHHHHHHHHhCC-CCEEEeCCCC---CHHHHHHHHHcCCCEEEE
Confidence 55555533 345677777664 5666654322 145566678889987643
No 287
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=92.59 E-value=5.3 Score=39.81 Aligned_cols=139 Identities=17% Similarity=0.148 Sum_probs=83.6
Q ss_pred HHHHHHcCCCEEEEecC--------CchHHHH--hhhcCCHHHHHHHHHHHHHHHHhC-CCc--EEEEEeeeecCCCCCC
Q 018252 207 FEAAIAAGAKEVAIFAS--------ASEAFSK--SNINCSIEDSLVRYRAVAHAAKVL-SIP--VRGYVSCVVGCPVEGA 273 (359)
Q Consensus 207 ie~a~~aGv~~V~i~~s--------~S~~~~~--~n~~~t~~e~l~~i~~~i~~Ak~~-G~~--V~~~is~~fg~~~~~r 273 (359)
.++|.++|.|.|.+... .|+..++ ..+|-+.++-.+-+.++++.+|+. |.+ |..-|+.. -...+-
T Consensus 147 A~ra~~aGfDgVeih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~~ir~~vg~~~~v~iRl~~~--~~~~~G 224 (343)
T cd04734 147 ARRCQAGGLDGVELQAAHGHLIDQFLSPLTNRRTDEYGGSLENRMRFLLEVLAAVRAAVGPDFIVGIRISGD--EDTEGG 224 (343)
T ss_pred HHHHHHcCCCEEEEccccchHHHHhhCCCcCCCCCcCCCCHHHHhHHHHHHHHHHHHHcCCCCeEEEEeehh--hccCCC
Confidence 34667789998877653 2454443 336778887777788888888875 443 33334311 111122
Q ss_pred CCHHHHHHHHHHHHHCC-cCEEEEcCC-----------CCC-Cc-HHHHHHHHHHHHHhCCCceEEEEeCCCCCcHHHHH
Q 018252 274 IPPSKVAYVAKELHDMG-CFEISLGDT-----------IGV-GT-PGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNI 339 (359)
Q Consensus 274 ~~~e~l~~~a~~l~~~G-ad~I~L~DT-----------~G~-~~-P~~v~~lv~~l~~~~p~~~L~~H~HNd~GLAlANa 339 (359)
.++++..++++.+.++| +|-|.+.-- ... .. +....++++.+++.+. +++..-+ ++ ....-+
T Consensus 225 ~~~~e~~~~~~~l~~~G~vd~i~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~-ipvi~~G--~i-~~~~~~ 300 (343)
T cd04734 225 LSPDEALEIAARLAAEGLIDYVNVSAGSYYTLLGLAHVVPSMGMPPGPFLPLAARIKQAVD-LPVFHAG--RI-RDPAEA 300 (343)
T ss_pred CCHHHHHHHHHHHHhcCCCCEEEeCCCCCCcccccccccCCCCCCcchhHHHHHHHHHHcC-CCEEeeC--CC-CCHHHH
Confidence 57888999999999998 898887311 000 01 1123467777888765 4555533 11 114556
Q ss_pred HHHHHcC-CCEEe
Q 018252 340 LISLQVS-PMHAK 351 (359)
Q Consensus 340 laAv~AG-a~~ID 351 (359)
..+++.| ||.|-
T Consensus 301 ~~~l~~~~~D~V~ 313 (343)
T cd04734 301 EQALAAGHADMVG 313 (343)
T ss_pred HHHHHcCCCCeee
Confidence 6777766 77764
No 288
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=92.58 E-value=4.8 Score=35.04 Aligned_cols=113 Identities=16% Similarity=0.177 Sum_probs=68.1
Q ss_pred HHHHHHHHHHhCCCCEEEEeccCCCCCcCCCCCHHHHHHHhhhcCCCeEEEEeCChHhHHHHHHcCCCEEEEecCCchHH
Q 018252 149 VKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPVLTPNLKGFEAAIAAGAKEVAIFASASEAF 228 (359)
Q Consensus 149 ~k~~ia~~L~~aGv~~IEvG~fvspk~vPq~~D~~ev~~~l~~~~~~~l~~l~~n~~gie~a~~aGv~~V~i~~s~S~~~ 228 (359)
-|.-++..|.++|+++|..|..++| +++ ++.|.+.+++-|.+..-
T Consensus 17 Gk~iv~~~l~~~GfeVi~LG~~v~~---------e~~---------------------v~aa~~~~adiVglS~l----- 61 (134)
T TIGR01501 17 GNKILDHAFTNAGFNVVNLGVLSPQ---------EEF---------------------IKAAIETKADAILVSSL----- 61 (134)
T ss_pred hHHHHHHHHHHCCCEEEECCCCCCH---------HHH---------------------HHHHHHcCCCEEEEecc-----
Confidence 3556777889999999999986654 444 44555556666665321
Q ss_pred HHhhhcCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHHCCcCEEEEcCCCCCCcHHHH
Q 018252 229 SKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTV 308 (359)
Q Consensus 229 ~~~n~~~t~~e~l~~i~~~i~~Ak~~G~~V~~~is~~fg~~~~~r~~~e~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v 308 (359)
++.+ +..++++++..++.|+.-.. + .+|.. -..+++...+..+++.++|++.+.=+.| .|+++
T Consensus 62 ----~~~~----~~~~~~~~~~l~~~gl~~~~-v--ivGG~--~vi~~~d~~~~~~~l~~~Gv~~vF~pgt----~~~~i 124 (134)
T TIGR01501 62 ----YGHG----EIDCKGLRQKCDEAGLEGIL-L--YVGGN--LVVGKQDFPDVEKRFKEMGFDRVFAPGT----PPEVV 124 (134)
T ss_pred ----cccC----HHHHHHHHHHHHHCCCCCCE-E--EecCC--cCcChhhhHHHHHHHHHcCCCEEECcCC----CHHHH
Confidence 1111 23345667777777774211 1 23320 1246666666777888899988886665 45555
Q ss_pred HHHHH
Q 018252 309 VPMLE 313 (359)
Q Consensus 309 ~~lv~ 313 (359)
.+.++
T Consensus 125 v~~l~ 129 (134)
T TIGR01501 125 IADLK 129 (134)
T ss_pred HHHHH
Confidence 55544
No 289
>TIGR02317 prpB methylisocitrate lyase. Members of this family are methylisocitrate lyase, also called (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate pyruvate-lyase. This enzyme acts in propionate metabolism. It cleaves a carbon-carbon bond to convert 2-methylisocitrate to pyruvate plus succinate. Some members of this family have been annotated, incorrectly it seems, as the related protein carboxyphosphoenolpyruvate phosphomutase, which is involved in synthesizing the antibiotic bialaphos in Streptomyces hygroscopicus.
Probab=92.55 E-value=1.8 Score=42.32 Aligned_cols=133 Identities=11% Similarity=0.137 Sum_probs=83.1
Q ss_pred HHHHHcCCCEEEEec-CCchHHHHhhhc-CCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHH
Q 018252 208 EAAIAAGAKEVAIFA-SASEAFSKSNIN-CSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKE 285 (359)
Q Consensus 208 e~a~~aGv~~V~i~~-s~S~~~~~~n~~-~t~~e~l~~i~~~i~~Ak~~G~~V~~~is~~fg~~~~~r~~~e~l~~~a~~ 285 (359)
..+..+|.+-+.+.- .+|-.+-.--.+ .+.+|.++.++.+.+. -.++|.+.+-.-| -++..+...+++
T Consensus 27 ri~e~aGf~Ai~~sg~~~a~~lG~pD~g~lt~~e~~~~~~~I~~~---~~iPviaD~d~Gy-------G~~~~v~~tv~~ 96 (285)
T TIGR02317 27 LLAERAGFEAIYLSGAAVAASLGLPDLGITTLDEVAEDARRITRV---TDLPLLVDADTGF-------GEAFNVARTVRE 96 (285)
T ss_pred HHHHHcCCCEEEEcHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhc---cCCCEEEECCCCC-------CCHHHHHHHHHH
Confidence 344456877776631 111111111112 3677777777666544 3577755443222 248899999999
Q ss_pred HHHCCcCEEEEcCCCC-----------CCcHHHHHHHHHHHHHhCCCceEEEEe------CCCCCcHHHHHHHHHHcCCC
Q 018252 286 LHDMGCFEISLGDTIG-----------VGTPGTVVPMLEAVMAVVPVEKLAVHL------HDTYGQSLPNILISLQVSPM 348 (359)
Q Consensus 286 l~~~Gad~I~L~DT~G-----------~~~P~~v~~lv~~l~~~~p~~~L~~H~------HNd~GLAlANalaAv~AGa~ 348 (359)
+.++|+.-|.|-|.++ +..++++..-|++.++...+..+-+=. ...+--++.-+.+..+||||
T Consensus 97 ~~~aG~agi~IEDq~~pK~cgh~~g~~lv~~ee~~~kI~Aa~~a~~~~d~~IiARTDa~~~~g~deAI~Ra~ay~~AGAD 176 (285)
T TIGR02317 97 MEDAGAAAVHIEDQVLPKRCGHLPGKELVSREEMVDKIAAAVDAKRDEDFVIIARTDARAVEGLDAAIERAKAYVEAGAD 176 (285)
T ss_pred HHHcCCeEEEEecCCCccccCCCCCccccCHHHHHHHHHHHHHhccCCCEEEEEEcCcccccCHHHHHHHHHHHHHcCCC
Confidence 9999999999999873 345677777777777754332222211 22344678888999999999
Q ss_pred EE
Q 018252 349 HA 350 (359)
Q Consensus 349 ~I 350 (359)
.|
T Consensus 177 ~v 178 (285)
T TIGR02317 177 MI 178 (285)
T ss_pred EE
Confidence 76
No 290
>TIGR02631 xylA_Arthro xylose isomerase, Arthrobacter type. This model describes a D-xylose isomerase that is also active as a D-glucose isomerase. It is tetrameric and dependent on a divalent cation Mg2+, Co2+ or Mn2+ as characterized in Arthrobacter. Members of this family differ substantially from the D-xylose isomerases of family TIGR02630.
Probab=92.49 E-value=4.5 Score=41.08 Aligned_cols=177 Identities=14% Similarity=0.079 Sum_probs=86.6
Q ss_pred CHHHHHHHHHHHHhCCCCEEEEeccCCCCCcCCCCC-------HHHHHHHhhhcCCCeEEEEeCC---------------
Q 018252 146 PTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLAD-------ARDVMEAVRDLEGARLPVLTPN--------------- 203 (359)
Q Consensus 146 ~~~~k~~ia~~L~~aGv~~IEvG~fvspk~vPq~~D-------~~ev~~~l~~~~~~~l~~l~~n--------------- 203 (359)
+.-.-.+.++.+.++|++.||+-.. ..+|.-.+ .+++.+.++ -.+.++.++++|
T Consensus 30 ~~~~~~e~i~~la~~GfdgVE~~~~---dl~P~~~~~~e~~~~~~~lk~~L~-~~GL~v~~v~~nl~~~~~~~~g~las~ 105 (382)
T TIGR02631 30 TALDPVEAVHKLAELGAYGVTFHDD---DLIPFGAPPQERDQIVRRFKKALD-ETGLKVPMVTTNLFSHPVFKDGGFTSN 105 (382)
T ss_pred CCcCHHHHHHHHHHhCCCEEEeccc---ccCCCCCChhHHHHHHHHHHHHHH-HhCCeEEEeeccccCCccccCCCCCCC
Confidence 4446678888999999999998621 11121111 123333333 234454443321
Q ss_pred -h----H-------hHHHHHHcCCCEEEEecCCc--hHHHHhhhcCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCC
Q 018252 204 -L----K-------GFEAAIAAGAKEVAIFASAS--EAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCP 269 (359)
Q Consensus 204 -~----~-------gie~a~~aGv~~V~i~~s~S--~~~~~~n~~~t~~e~l~~i~~~i~~Ak~~G~~V~~~is~~fg~~ 269 (359)
. + .++.|.+.|.+.|.+..... +.-.........+...+.+..+.++|++.|..|++.|...-.-+
T Consensus 106 d~~vR~~ai~~~kraId~A~eLGa~~v~v~~G~~g~~~~~~~d~~~a~~~~~e~L~~lae~A~~~G~GV~laLEp~p~~~ 185 (382)
T TIGR02631 106 DRSVRRYALRKVLRNMDLGAELGAETYVVWGGREGAEYDGAKDVRAALDRMREALNLLAAYAEDQGYGLRFALEPKPNEP 185 (382)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhCCCEEEEccCCCCCcCccccCHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEccCCCCC
Confidence 1 1 13345557999887764321 11000011112344566777888889998766665665321111
Q ss_pred CC--CCCCHHHHHHHHHHHHHCCcCE-EEE-cCCCCCCcH-HHHHHHHHHHHHhCCCceEEEEeCCC
Q 018252 270 VE--GAIPPSKVAYVAKELHDMGCFE-ISL-GDTIGVGTP-GTVVPMLEAVMAVVPVEKLAVHLHDT 331 (359)
Q Consensus 270 ~~--~r~~~e~l~~~a~~l~~~Gad~-I~L-~DT~G~~~P-~~v~~lv~~l~~~~p~~~L~~H~HNd 331 (359)
.. --.+++...++++++ |... +.+ -|+.=...- ..+...+..... .+...++|.|+.
T Consensus 186 ~~~~ll~T~~~al~li~~v---~~pn~vgl~lDvgH~~~~g~n~~~~i~~~l~--~~kl~HvhlnD~ 247 (382)
T TIGR02631 186 RGDILLPTVGHALAFIETL---ERPELFGLNPETGHEQMAGLNFTHGIAQALW--AGKLFHIDLNGQ 247 (382)
T ss_pred CcceecCCHHHHHHHHHHc---CCccceeEEEechhHhhcCCCHHHHHHHHHh--CCCEEEEecCCC
Confidence 10 123555655555544 4433 444 565332111 122233332221 235788899985
No 291
>TIGR01125 MiaB-like tRNA modifying enzyme YliG, TIGR01125. This clade spans alpha and gamma proteobacteria, cyano bacteria, deinococcus, porphyromonas, aquifex, helicobacter, campylobacter, thermotoga, chlamydia, streptococcus coelicolor and clostridium, but does not include most other gram positive bacteria, archaea or eukaryotes.
Probab=92.46 E-value=5.8 Score=40.59 Aligned_cols=143 Identities=15% Similarity=0.085 Sum_probs=82.5
Q ss_pred CCCHHHHHHHHHHHHhCCCCEEEEec---cCCCCCcCCCCCHHHHHHHhhhcCCC---eEEEEeC---ChHhHHHHHHcC
Q 018252 144 TVPTGVKVELIRRLVSSGLPVVEATS---FVSPKWVPQLADARDVMEAVRDLEGA---RLPVLTP---NLKGFEAAIAAG 214 (359)
Q Consensus 144 ~~~~~~k~~ia~~L~~aGv~~IEvG~---fvspk~vPq~~D~~ev~~~l~~~~~~---~l~~l~~---n~~gie~a~~aG 214 (359)
..+.+..++-++.|.+.|++.|.+.. +....-...-....++++.+.+.++. ++..+-| +.+-++...++|
T Consensus 163 ~r~~e~Vv~Ei~~l~~~g~k~i~~~~~d~~~~g~d~~~~~~l~~Ll~~i~~~~~i~~~r~~~~~p~~~~~ell~~~~~~~ 242 (430)
T TIGR01125 163 SRPIEEILKEAERLVDQGVKEIILIAQDTTAYGKDLYRESKLVDLLEELGKVGGIYWIRMHYLYPDELTDDVIDLMAEGP 242 (430)
T ss_pred ecCHHHHHHHHHHHHHCCCcEEEEEeECCCccccCCCCcccHHHHHHHHHhcCCccEEEEccCCcccCCHHHHHHHhhCC
Confidence 46788888888999999999887542 11110000012456666666654432 2222223 224456666664
Q ss_pred --CCEEEEec-CCchHHHHhhhcCCHHHHHHHHHHHHHHHHhC--CCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHHC
Q 018252 215 --AKEVAIFA-SASEAFSKSNINCSIEDSLVRYRAVAHAAKVL--SIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDM 289 (359)
Q Consensus 215 --v~~V~i~~-s~S~~~~~~n~~~t~~e~l~~i~~~i~~Ak~~--G~~V~~~is~~fg~~~~~r~~~e~l~~~a~~l~~~ 289 (359)
...+++-+ +.|+--.+ .+|+.. ..+.+.++++.++++ |+.+.+++. +|.|.+ +.+.+.+.++.+.+.
T Consensus 243 ~~~~~l~iglES~s~~vLk-~m~k~~--~~~~~~~~i~~l~~~~~~i~i~~~~I--~G~PgE---T~e~~~~t~~fl~~~ 314 (430)
T TIGR01125 243 KVLPYLDIPLQHASDRILK-LMRRPG--SGEQQLDFIERLREKCPDAVLRTTFI--VGFPGE---TEEDFQELLDFVEEG 314 (430)
T ss_pred cccCceEeCCCCCCHHHHh-hCCCCC--CHHHHHHHHHHHHHhCCCCeEeEEEE--EECCCC---CHHHHHHHHHHHHhc
Confidence 67777754 44443332 345421 235666777888887 455666664 787765 556666677777777
Q ss_pred CcCEE
Q 018252 290 GCFEI 294 (359)
Q Consensus 290 Gad~I 294 (359)
+++.+
T Consensus 315 ~~~~~ 319 (430)
T TIGR01125 315 QFDRL 319 (430)
T ss_pred CCCEE
Confidence 76644
No 292
>cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE). This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis.
Probab=92.45 E-value=7.9 Score=34.82 Aligned_cols=173 Identities=18% Similarity=0.163 Sum_probs=96.7
Q ss_pred CCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcCCCCCHHHHHHHhhhcCCCeE--EEEeCCh-HhHHHHHHcCCCEEEEe
Q 018252 145 VPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARL--PVLTPNL-KGFEAAIAAGAKEVAIF 221 (359)
Q Consensus 145 ~~~~~k~~ia~~L~~aGv~~IEvG~fvspk~vPq~~D~~ev~~~l~~~~~~~l--~~l~~n~-~gie~a~~aGv~~V~i~ 221 (359)
++...-.+.++.+.++|++.|+++.-..+ ..|...-..+..+.++...+..+ ..++-+. +.++.+.++|++.|.+.
T Consensus 9 ~d~~~~~~~~~~~~~~G~~~i~l~~~d~~-~~~~~~~~~~~~~~i~~~~~~~~~v~l~~~d~~~~~~~~~~~g~dgv~vh 87 (211)
T cd00429 9 ADFANLGEELKRLEEAGADWIHIDVMDGH-FVPNLTFGPPVVKALRKHTDLPLDVHLMVENPERYIEAFAKAGADIITFH 87 (211)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEecccCC-CCCccccCHHHHHHHHhhCCCcEEEEeeeCCHHHHHHHHHHcCCCEEEEC
Confidence 45566677899999999999999641110 01111111122333433222222 2333333 56888899999998775
Q ss_pred cCCchHHHHhhhcCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHHCCcCEEEEc----
Q 018252 222 ASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLG---- 297 (359)
Q Consensus 222 ~s~S~~~~~~n~~~t~~e~l~~i~~~i~~Ak~~G~~V~~~is~~fg~~~~~r~~~e~l~~~a~~l~~~Gad~I~L~---- 297 (359)
...++ ...+.++.++++|+.+...+. + .++.+.+.++. + ++|.|.+.
T Consensus 88 ~~~~~----------------~~~~~~~~~~~~~~~~g~~~~-----~---~~~~~~~~~~~----~-~~d~i~~~~~~~ 138 (211)
T cd00429 88 AEATD----------------HLHRTIQLIKELGMKAGVALN-----P---GTPVEVLEPYL----D-EVDLVLVMSVNP 138 (211)
T ss_pred ccchh----------------hHHHHHHHHHHCCCeEEEEec-----C---CCCHHHHHHHH----h-hCCEEEEEEECC
Confidence 43221 223457777888887643221 1 12333333332 2 26665442
Q ss_pred CCCCCCcHHHHHHHHHHHHHhCC----CceEEEEeCCCCCcHHHHHHHHHHcCCCEEe
Q 018252 298 DTIGVGTPGTVVPMLEAVMAVVP----VEKLAVHLHDTYGQSLPNILISLQVSPMHAK 351 (359)
Q Consensus 298 DT~G~~~P~~v~~lv~~l~~~~p----~~~L~~H~HNd~GLAlANalaAv~AGa~~ID 351 (359)
-+.|...+....+.++.+++..+ ..++.+= -|....|+-.++++|++.|=
T Consensus 139 g~tg~~~~~~~~~~i~~~~~~~~~~~~~~pi~v~----GGI~~env~~~~~~gad~ii 192 (211)
T cd00429 139 GFGGQKFIPEVLEKIRKLRELIPENNLNLLIEVD----GGINLETIPLLAEAGADVLV 192 (211)
T ss_pred CCCCcccCHHHHHHHHHHHHHHHhcCCCeEEEEE----CCCCHHHHHHHHHcCCCEEE
Confidence 22333445566677777776653 3556543 37888999999999999763
No 293
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=92.44 E-value=3.4 Score=39.42 Aligned_cols=105 Identities=19% Similarity=0.169 Sum_probs=61.1
Q ss_pred HHHHHHcCCCEEEEecCCchHHHHhhhcCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHH
Q 018252 207 FEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKEL 286 (359)
Q Consensus 207 ie~a~~aGv~~V~i~~s~S~~~~~~n~~~t~~e~l~~i~~~i~~Ak~~G~~V~~~is~~fg~~~~~r~~~e~l~~~a~~l 286 (359)
++..++.|++.|.+.-++.|.+. .|.+|-.+-++.+++.++. .++|.+.+ +..+.+...++++.+
T Consensus 24 i~~l~~~Gv~gi~~~GstGE~~~-----ls~~Er~~l~~~~~~~~~~-~~~vi~gv---------~~~~~~~~i~~a~~a 88 (281)
T cd00408 24 VEFLIEAGVDGLVVLGTTGEAPT-----LTDEERKEVIEAVVEAVAG-RVPVIAGV---------GANSTREAIELARHA 88 (281)
T ss_pred HHHHHHcCCCEEEECCCCccccc-----CCHHHHHHHHHHHHHHhCC-CCeEEEec---------CCccHHHHHHHHHHH
Confidence 45556678887777777666543 3455555555555555431 23332222 233556677788888
Q ss_pred HHCCcCEEEEcCCCCC-CcHHHHHHHHHHHHHhCCCceEEEE
Q 018252 287 HDMGCFEISLGDTIGV-GTPGTVVPMLEAVMAVVPVEKLAVH 327 (359)
Q Consensus 287 ~~~Gad~I~L~DT~G~-~~P~~v~~lv~~l~~~~p~~~L~~H 327 (359)
.++|+|.|.+.=..-. .+++++.+.++.+.+..+ +++-++
T Consensus 89 ~~~Gad~v~v~pP~y~~~~~~~~~~~~~~ia~~~~-~pi~iY 129 (281)
T cd00408 89 EEAGADGVLVVPPYYNKPSQEGIVAHFKAVADASD-LPVILY 129 (281)
T ss_pred HHcCCCEEEECCCcCCCCCHHHHHHHHHHHHhcCC-CCEEEE
Confidence 8888886655443322 356777777777777643 455543
No 294
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=92.37 E-value=3.4 Score=39.64 Aligned_cols=105 Identities=14% Similarity=0.117 Sum_probs=57.0
Q ss_pred HHHHHHcCCCEEEEecCCchHHHHhhhcCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHH
Q 018252 207 FEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKEL 286 (359)
Q Consensus 207 ie~a~~aGv~~V~i~~s~S~~~~~~n~~~t~~e~l~~i~~~i~~Ak~~G~~V~~~is~~fg~~~~~r~~~e~l~~~a~~l 286 (359)
++..++.|++.+.+.-++.|.+ ..|.+|-.+-++.+++.++ ..+.+.+.+ +..+.++.++.++.+
T Consensus 27 i~~l~~~Gv~gl~v~GstGE~~-----~lt~~Er~~l~~~~~~~~~-~~~~vi~gv---------~~~~~~~~~~~a~~a 91 (284)
T cd00950 27 IEFQIENGTDGLVVCGTTGESP-----TLSDEEHEAVIEAVVEAVN-GRVPVIAGT---------GSNNTAEAIELTKRA 91 (284)
T ss_pred HHHHHHcCCCEEEECCCCcchh-----hCCHHHHHHHHHHHHHHhC-CCCcEEecc---------CCccHHHHHHHHHHH
Confidence 4555667777777766666654 2345555555554554433 123332211 233556777777777
Q ss_pred HHCCcCEEEEc-CCCCCCcHHHHHHHHHHHHHhCCCceEEEE
Q 018252 287 HDMGCFEISLG-DTIGVGTPGTVVPMLEAVMAVVPVEKLAVH 327 (359)
Q Consensus 287 ~~~Gad~I~L~-DT~G~~~P~~v~~lv~~l~~~~p~~~L~~H 327 (359)
.++|+|.|.+. =.....++.++.+.++.+.+..+ ++|-++
T Consensus 92 ~~~G~d~v~~~~P~~~~~~~~~l~~~~~~ia~~~~-~pi~lY 132 (284)
T cd00950 92 EKAGADAALVVTPYYNKPSQEGLYAHFKAIAEATD-LPVILY 132 (284)
T ss_pred HHcCCCEEEEcccccCCCCHHHHHHHHHHHHhcCC-CCEEEE
Confidence 77777754443 22233355666666666666532 455544
No 295
>PRK14331 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=92.36 E-value=4.8 Score=41.37 Aligned_cols=144 Identities=15% Similarity=0.164 Sum_probs=85.9
Q ss_pred CCCCHHHHHHHHHHHHhCCCCEEEEec--c-CCCCCcCCCCCHHHHHHHhhhcCC---CeEEEEeCC---hHhHHHHHHc
Q 018252 143 NTVPTGVKVELIRRLVSSGLPVVEATS--F-VSPKWVPQLADARDVMEAVRDLEG---ARLPVLTPN---LKGFEAAIAA 213 (359)
Q Consensus 143 ~~~~~~~k~~ia~~L~~aGv~~IEvG~--f-vspk~vPq~~D~~ev~~~l~~~~~---~~l~~l~~n---~~gie~a~~a 213 (359)
...+.+..++-++.|.+.|++.|.+.. + ..++.... ....++++.+.+.++ +++....|. .+-++...++
T Consensus 173 rsr~~e~V~~Ei~~l~~~g~~eI~l~d~~~~~y~~~~~~-~~~~~Ll~~l~~~~g~~~i~~~~~~p~~l~~ell~~~~~~ 251 (437)
T PRK14331 173 RSRRLGSILDEVQWLVDDGVKEIHLIGQNVTAYGKDIGD-VPFSELLYAVAEIDGVERIRFTTGHPRDLDEDIIKAMADI 251 (437)
T ss_pred ccCCHHHHHHHHHHHHHCCCeEEEEeeeccccccCCCCC-CCHHHHHHHHhcCCCccEEEEeccCcccCCHHHHHHHHcC
Confidence 346788999999999999999887753 2 11111100 134455665555444 333332342 2345555555
Q ss_pred --CCCEEEEec-CCchHHHHhhhcCCHHHHHHHHHHHHHHHHhC--CCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHH
Q 018252 214 --GAKEVAIFA-SASEAFSKSNINCSIEDSLVRYRAVAHAAKVL--SIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHD 288 (359)
Q Consensus 214 --Gv~~V~i~~-s~S~~~~~~n~~~t~~e~l~~i~~~i~~Ak~~--G~~V~~~is~~fg~~~~~r~~~e~l~~~a~~l~~ 288 (359)
|.+.+++.+ +.|+--.+ .+|+.. ..+.+.++++.++++ |+.+.++++ +|.|.+ +.+.+.+..+.+.+
T Consensus 252 ~~~~~~l~igiqSgsd~vLk-~m~R~~--t~~~~~~~v~~lr~~~~gi~i~~d~I--vG~PgE---T~ed~~~tl~~l~~ 323 (437)
T PRK14331 252 PQVCEHLHLPFQAGSDRILK-LMDRGY--TKEEYLEKIELLKEYIPDITFSTDII--VGFPTE---TEEDFEETLDVLKK 323 (437)
T ss_pred CccCCceecccccCChHHHH-HcCCCC--CHHHHHHHHHHHHHhCCCCEEecCEE--EECCCC---CHHHHHHHHHHHHh
Confidence 478888865 55554433 455432 234556777778887 888877776 787766 55666666777777
Q ss_pred CCcCEEE
Q 018252 289 MGCFEIS 295 (359)
Q Consensus 289 ~Gad~I~ 295 (359)
.+.+.+.
T Consensus 324 l~~~~i~ 330 (437)
T PRK14331 324 VEFEQVF 330 (437)
T ss_pred cCcceee
Confidence 7766543
No 296
>PRK09206 pyruvate kinase; Provisional
Probab=92.35 E-value=14 Score=38.76 Aligned_cols=188 Identities=12% Similarity=0.123 Sum_probs=111.3
Q ss_pred CCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcCCCCCHHHHHHHhhhc--CCCeEEEEeCChHhHHH---HHHcCCCEEE
Q 018252 145 VPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDL--EGARLPVLTPNLKGFEA---AIAAGAKEVA 219 (359)
Q Consensus 145 ~~~~~k~~ia~~L~~aGv~~IEvG~fvspk~vPq~~D~~ev~~~l~~~--~~~~l~~l~~n~~gie~---a~~aGv~~V~ 219 (359)
++..++.. ++.-.+.|+|.|=+.| +.. ..|..++.+.+... ..+.+.+-+.+.+++++ .++. +|.|.
T Consensus 170 ltekD~~d-i~f~~~~~vD~ia~SF-Vr~-----~~Dv~~~r~~l~~~~~~~~~iiaKIEt~eav~nldeIl~~-~DgIm 241 (470)
T PRK09206 170 LAEKDKQD-LIFGCEQGVDFVAASF-IRK-----RSDVLEIREHLKAHGGENIQIISKIENQEGLNNFDEILEA-SDGIM 241 (470)
T ss_pred CCHHHHHH-HHHHHHcCCCEEEEcC-CCC-----HHHHHHHHHHHHHcCCCCceEEEEECCHHHHHhHHHHHHh-CCEEE
Confidence 55566655 5777799999997765 432 14566666666553 35666666767665543 3433 56554
Q ss_pred EecCCchHHHHhhhcCCHHHHHHHHHHHHHHHHhCCCcEEEEE-eee--ecCCCCCCCCHHHHHHHHHHHHHCCcCEEEE
Q 018252 220 IFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYV-SCV--VGCPVEGAIPPSKVAYVAKELHDMGCFEISL 296 (359)
Q Consensus 220 i~~s~S~~~~~~n~~~t~~e~l~~i~~~i~~Ak~~G~~V~~~i-s~~--fg~~~~~r~~~e~l~~~a~~l~~~Gad~I~L 296 (359)
+ .-.|+-. -...++.....+++++.|+++|..|...= +.+ ..+| +-+..++.+++..+.+ |+|.|.|
T Consensus 242 V--aRGDLgv----elg~e~vp~~qk~ii~~~~~~gkpvI~ATqmLeSM~~np---~PTRAEvsDVanav~d-G~DavML 311 (470)
T PRK09206 242 V--ARGDLGV----EIPVEEVIFAQKMMIEKCNRARKVVITATQMLDSMIKNP---RPTRAEAGDVANAILD-GTDAVML 311 (470)
T ss_pred E--Ccchhhh----hcCHHHHHHHHHHHHHHHHHcCCCEEEEchhHHHHhhCC---CCCchhhHHHHHHhhh-CCcEEEE
Confidence 4 2222221 12256666677899999999999873211 000 0122 3355677788887776 9999999
Q ss_pred -cCCCCCCcHHHHHHHHHHHHHhCCC---ceEEEEe-----CCCCCcHHHHHHHHHHcCCCEE
Q 018252 297 -GDTIGVGTPGTVVPMLEAVMAVVPV---EKLAVHL-----HDTYGQSLPNILISLQVSPMHA 350 (359)
Q Consensus 297 -~DT~G~~~P~~v~~lv~~l~~~~p~---~~L~~H~-----HNd~GLAlANalaAv~AGa~~I 350 (359)
+-|+=--.|.+..+.+..+.+.... ..+..+. +-...+|.+...+|...+|+.|
T Consensus 312 S~ETA~G~yPveaV~~m~~I~~~~E~~~~~~~~~~~~~~~~~~~~~ia~sa~~~A~~l~a~aI 374 (470)
T PRK09206 312 SGESAKGKYPLEAVSIMATICERTDRVMNSRLESNNDNRKLRITEAVCRGAVETAEKLDAPLI 374 (470)
T ss_pred echhcCCCCHHHHHHHHHHHHHHHHhhcchhhhhhccccCCChHHHHHHHHHHHHhcCCCCEE
Confidence 4566666898888888777754321 0111111 0112355556666777777754
No 297
>COG0821 gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase [Lipid metabolism]
Probab=92.35 E-value=7.4 Score=38.96 Aligned_cols=100 Identities=26% Similarity=0.292 Sum_probs=66.8
Q ss_pred CHHHHHHHHHHHHhCCCCEEEEeccCCCCCcCCCCCHHHHHHHhhhcCCCeEEEEeC-ChHhHHHHHHcCCCEEEEecCC
Q 018252 146 PTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPVLTP-NLKGFEAAIAAGAKEVAIFASA 224 (359)
Q Consensus 146 ~~~~k~~ia~~L~~aGv~~IEvG~fvspk~vPq~~D~~ev~~~l~~~~~~~l~~l~~-n~~gie~a~~aGv~~V~i~~s~ 224 (359)
+.+.-++-++.|.++|.+.+-+.. |.+.+++.+ ..+++..++.+++=+- +.+-.-.+.+.|++.+++-..
T Consensus 34 Dv~aTv~QI~~L~~aG~dIVRvtv-------~~~e~A~A~-~~Ik~~~~vPLVaDiHf~~rla~~~~~~g~~k~RINPG- 104 (361)
T COG0821 34 DVEATVAQIKALERAGCDIVRVTV-------PDMEAAEAL-KEIKQRLNVPLVADIHFDYRLALEAAECGVDKVRINPG- 104 (361)
T ss_pred cHHHHHHHHHHHHHcCCCEEEEec-------CCHHHHHHH-HHHHHhCCCCEEEEeeccHHHHHHhhhcCcceEEECCc-
Confidence 345566777889999999999987 334455544 4444444555544332 444445566789999998322
Q ss_pred chHHHHhhhcCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecC
Q 018252 225 SEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGC 268 (359)
Q Consensus 225 S~~~~~~n~~~t~~e~l~~i~~~i~~Ak~~G~~V~~~is~~fg~ 268 (359)
|+|. -++++++++.|+++|+.+|.-+- +|.
T Consensus 105 -------Nig~-----~~~v~~vVe~Ak~~g~piRIGVN--~GS 134 (361)
T COG0821 105 -------NIGF-----KDRVREVVEAAKDKGIPIRIGVN--AGS 134 (361)
T ss_pred -------ccCc-----HHHHHHHHHHHHHcCCCEEEecc--cCc
Confidence 4442 23789999999999999997765 553
No 298
>PRK14335 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=92.32 E-value=8.5 Score=39.84 Aligned_cols=143 Identities=11% Similarity=0.066 Sum_probs=83.8
Q ss_pred CCCHHHHHHHHHHHHhCCCCEEEEec--cCCC-CCc--CCCCCHHHHHHHhh----hcCCCeEEE---EeCC---hHhHH
Q 018252 144 TVPTGVKVELIRRLVSSGLPVVEATS--FVSP-KWV--PQLADARDVMEAVR----DLEGARLPV---LTPN---LKGFE 208 (359)
Q Consensus 144 ~~~~~~k~~ia~~L~~aGv~~IEvG~--fvsp-k~v--Pq~~D~~ev~~~l~----~~~~~~l~~---l~~n---~~gie 208 (359)
..+.+..++-++.|.+.|++.|-+.. +..- ..- .......++++.+. ...+..-.. .-|. .+-++
T Consensus 180 sr~~e~Vv~Ei~~l~~~G~~ei~l~g~~~~~y~~~~~~~~~~~~~~Ll~~l~~~~~~~~~i~~ir~~s~~p~~i~~ell~ 259 (455)
T PRK14335 180 SRDLDAILQEIDVLSEKGVREITLLGQNVNSYRGRDREGNIVTFPQLLRHIVRRAEVTDQIRWIRFMSSHPKDLSDDLIA 259 (455)
T ss_pred cCCHHHHHHHHHHHHHCCCeEEEEEeecccccccccccCCccCHHHHHHHHHHhhcccCCceEEEEeecCcccCCHHHHH
Confidence 46889999999999999999886643 1110 000 00113344445442 123332222 2232 23355
Q ss_pred HHHH--cCCCEEEEec-CCchHHHHhhhcCCHHHHHHHHHHHHHHHHhC--CCcEEEEEeeeecCCCCCCCCHHHHHHHH
Q 018252 209 AAIA--AGAKEVAIFA-SASEAFSKSNINCSIEDSLVRYRAVAHAAKVL--SIPVRGYVSCVVGCPVEGAIPPSKVAYVA 283 (359)
Q Consensus 209 ~a~~--aGv~~V~i~~-s~S~~~~~~n~~~t~~e~l~~i~~~i~~Ak~~--G~~V~~~is~~fg~~~~~r~~~e~l~~~a 283 (359)
...+ .|.+.+++.+ +.|+--.+ .+|+.. ..+.+.++++.+++. |+.+.+.++ +|.|.+ +.+.+.+.+
T Consensus 260 ~m~~~~~gc~~l~iglQSgsd~vLk-~m~R~~--t~e~~~~~v~~ir~~~pgi~i~~d~I--vGfPgE---T~edf~~Tl 331 (455)
T PRK14335 260 TIAQESRLCRLVHLPVQHGSNGVLK-RMNRSY--TREHYLSLVGKLKASIPNVALSTDIL--IGFPGE---TEEDFEQTL 331 (455)
T ss_pred HHHhCCCCCCeEEEccCcCCHHHHH-HcCCCC--CHHHHHHHHHHHHHhCCCCEEEEEEE--EeCCCC---CHHHHHHHH
Confidence 4545 4789999977 55554443 355532 245677888888888 888877776 887766 455566666
Q ss_pred HHHHHCCcCEE
Q 018252 284 KELHDMGCFEI 294 (359)
Q Consensus 284 ~~l~~~Gad~I 294 (359)
+.+.+.+.+.+
T Consensus 332 ~~i~~l~~~~~ 342 (455)
T PRK14335 332 DLMREVEFDSA 342 (455)
T ss_pred HHHHhcCCCeE
Confidence 66666666643
No 299
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=92.30 E-value=0.97 Score=44.37 Aligned_cols=82 Identities=13% Similarity=0.010 Sum_probs=70.0
Q ss_pred CCCCHHHHHHHHHHHHHCCcCEEEEcCCCCC---CcHHHHHHHHHHHHHhCCC-ceEEEEeC-CCCCcHHHHHHHHHHcC
Q 018252 272 GAIPPSKVAYVAKELHDMGCFEISLGDTIGV---GTPGTVVPMLEAVMAVVPV-EKLAVHLH-DTYGQSLPNILISLQVS 346 (359)
Q Consensus 272 ~r~~~e~l~~~a~~l~~~Gad~I~L~DT~G~---~~P~~v~~lv~~l~~~~p~-~~L~~H~H-Nd~GLAlANalaAv~AG 346 (359)
+..|.+.+.++++.+.+.|++-|.+.-|.|= ++.++-.++++.+++...+ +++-+|.- ++.--++..+..|-++|
T Consensus 24 g~iD~~~l~~lv~~li~~Gv~Gi~v~GstGE~~~Lt~eEr~~v~~~~~~~~~grvpvi~Gv~~~~t~~ai~~a~~A~~~G 103 (309)
T cd00952 24 DTVDLDETARLVERLIAAGVDGILTMGTFGECATLTWEEKQAFVATVVETVAGRVPVFVGATTLNTRDTIARTRALLDLG 103 (309)
T ss_pred CCcCHHHHHHHHHHHHHcCCCEEEECcccccchhCCHHHHHHHHHHHHHHhCCCCCEEEEeccCCHHHHHHHHHHHHHhC
Confidence 6799999999999999999999999999994 6688888888888877653 67777764 77889999999999999
Q ss_pred CCEEece
Q 018252 347 PMHAKPC 353 (359)
Q Consensus 347 a~~ID~t 353 (359)
|+.|=+.
T Consensus 104 ad~vlv~ 110 (309)
T cd00952 104 ADGTMLG 110 (309)
T ss_pred CCEEEEC
Confidence 9987544
No 300
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=92.28 E-value=11 Score=36.24 Aligned_cols=128 Identities=16% Similarity=0.129 Sum_probs=75.0
Q ss_pred HHHHHHcCCCEEEE--ecCCchHHHHhhhcCCHHHHHHHHHHHHHHHHhC-CCcEEEEEeeeecCCCCCCCCHHHHHHHH
Q 018252 207 FEAAIAAGAKEVAI--FASASEAFSKSNINCSIEDSLVRYRAVAHAAKVL-SIPVRGYVSCVVGCPVEGAIPPSKVAYVA 283 (359)
Q Consensus 207 ie~a~~aGv~~V~i--~~s~S~~~~~~n~~~t~~e~l~~i~~~i~~Ak~~-G~~V~~~is~~fg~~~~~r~~~e~l~~~a 283 (359)
.+++.++|+|.|.+ ..|... . .|...-+..+.+.++++.+|+. ++.|.+-++ + +.+...+++
T Consensus 108 a~~~~~~G~d~iElN~~cP~~~---~--~g~~~~~~~~~~~eiv~~vr~~~~~Pv~vKl~-----~-----~~~~~~~~a 172 (296)
T cd04740 108 AEKLADAGADAIELNISCPNVK---G--GGMAFGTDPEAVAEIVKAVKKATDVPVIVKLT-----P-----NVTDIVEIA 172 (296)
T ss_pred HHHHHHcCCCEEEEECCCCCCC---C--CcccccCCHHHHHHHHHHHHhccCCCEEEEeC-----C-----CchhHHHHH
Confidence 34555679996655 333221 1 0111112234556667777766 666654443 1 234678899
Q ss_pred HHHHHCCcCEEEEcCCCCCCc-------------------H---HHHHHHHHHHHHhCCCceEEEEeCCCCCc-HHHHHH
Q 018252 284 KELHDMGCFEISLGDTIGVGT-------------------P---GTVVPMLEAVMAVVPVEKLAVHLHDTYGQ-SLPNIL 340 (359)
Q Consensus 284 ~~l~~~Gad~I~L~DT~G~~~-------------------P---~~v~~lv~~l~~~~p~~~L~~H~HNd~GL-AlANal 340 (359)
+.+.++|+|.|.+-+|.+... | ....++++.+++.++ ++|-. .=|. .-..+.
T Consensus 173 ~~~~~~G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~~~~~~~i~~i~~~~~-ipii~----~GGI~~~~da~ 247 (296)
T cd04740 173 RAAEEAGADGLTLINTLKGMAIDIETRKPILGNVTGGLSGPAIKPIALRMVYQVYKAVE-IPIIG----VGGIASGEDAL 247 (296)
T ss_pred HHHHHcCCCEEEEECCCcccccccccCceeecCCcceecCcccchHHHHHHHHHHHhcC-CCEEE----ECCCCCHHHHH
Confidence 999999999988865543211 1 123467777777654 34433 2233 247888
Q ss_pred HHHHcCCCEEecee
Q 018252 341 ISLQVSPMHAKPCF 354 (359)
Q Consensus 341 aAv~AGa~~ID~tl 354 (359)
.++++||+.|-.+-
T Consensus 248 ~~l~~GAd~V~igr 261 (296)
T cd04740 248 EFLMAGASAVQVGT 261 (296)
T ss_pred HHHHcCCCEEEEch
Confidence 99999999887653
No 301
>PRK08508 biotin synthase; Provisional
Probab=92.25 E-value=0.67 Score=44.79 Aligned_cols=39 Identities=18% Similarity=0.017 Sum_probs=23.4
Q ss_pred CHHHHHHHHHHHHHCCcCEEEEcCCCCCCcHHHHHHHHHH
Q 018252 275 PPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEA 314 (359)
Q Consensus 275 ~~e~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~lv~~ 314 (359)
+.+++.++++.+.+.+.+ +.++-+.|..+++.+.+|-++
T Consensus 73 ~~e~~~ei~~~ik~~~p~-l~i~~s~G~~~~e~l~~Lk~a 111 (279)
T PRK08508 73 KLEYVAEAAKAVKKEVPG-LHLIACNGTASVEQLKELKKA 111 (279)
T ss_pred cHHHHHHHHHHHHhhCCC-cEEEecCCCCCHHHHHHHHHc
Confidence 556777777777765542 233445677776666555443
No 302
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=92.25 E-value=9.3 Score=35.22 Aligned_cols=182 Identities=12% Similarity=0.057 Sum_probs=97.1
Q ss_pred HHHHHHHHHHHHhCCCCEEEEeccCCCCCcCCCCCHHHHHHHhhhcCCCeEE--EEeCChHhHHHHHHcCCCEEEEecCC
Q 018252 147 TGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLP--VLTPNLKGFEAAIAAGAKEVAIFASA 224 (359)
Q Consensus 147 ~~~k~~ia~~L~~aGv~~IEvG~fvspk~vPq~~D~~ev~~~l~~~~~~~l~--~l~~n~~gie~a~~aGv~~V~i~~s~ 224 (359)
..+-+++++.+.+.|++.+-+--...- ....-.+. ++.+.+.+.-+..+. +-++..++++.++++|++.|-+-..
T Consensus 28 ~~dp~~~a~~~~~~g~d~l~v~dl~~~-~~~~~~~~-~~i~~i~~~~~~pv~~~GgI~~~e~~~~~~~~Gad~vvigs~- 104 (234)
T cd04732 28 SDDPVEVAKKWEEAGAKWLHVVDLDGA-KGGEPVNL-ELIEEIVKAVGIPVQVGGGIRSLEDIERLLDLGVSRVIIGTA- 104 (234)
T ss_pred CCCHHHHHHHHHHcCCCEEEEECCCcc-ccCCCCCH-HHHHHHHHhcCCCEEEeCCcCCHHHHHHHHHcCCCEEEECch-
Confidence 457788999999999999987532110 00011222 334444433233333 3446778999999999998755221
Q ss_pred chHHHHhhhcCCHHHHHHHHHHHHHHHHhCCC-cEEEEEeeeecC--CCCC-CCCHHHHHHHHHHHHHCCcCEEEEcCC-
Q 018252 225 SEAFSKSNINCSIEDSLVRYRAVAHAAKVLSI-PVRGYVSCVVGC--PVEG-AIPPSKVAYVAKELHDMGCFEISLGDT- 299 (359)
Q Consensus 225 S~~~~~~n~~~t~~e~l~~i~~~i~~Ak~~G~-~V~~~is~~fg~--~~~~-r~~~e~l~~~a~~l~~~Gad~I~L~DT- 299 (359)
.+. ..+.+.+++ +..|. .+...+..--+. .... ..+.....++++.+.+.|++.|.+-|.
T Consensus 105 --~l~----------dp~~~~~i~---~~~g~~~i~~sid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ga~~iii~~~~ 169 (234)
T cd04732 105 --AVK----------NPELVKELL---KEYGGERIVVGLDAKDGKVATKGWLETSEVSLEELAKRFEELGVKAIIYTDIS 169 (234)
T ss_pred --HHh----------ChHHHHHHH---HHcCCceEEEEEEeeCCEEEECCCeeecCCCHHHHHHHHHHcCCCEEEEEeec
Confidence 111 122233333 33443 333332210000 0000 112334567899999999999887764
Q ss_pred -CCCCcHHHHHHHHHHHHHhCCCceEEEEeCCCCCcHHHHHHHHHHcCCCEEe
Q 018252 300 -IGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQVSPMHAK 351 (359)
Q Consensus 300 -~G~~~P~~v~~lv~~l~~~~p~~~L~~H~HNd~GLAlANalaAv~AGa~~ID 351 (359)
.|..... -.++++.+++..+ +|+-.-+.-.. ..-...+++.||+.|=
T Consensus 170 ~~g~~~g~-~~~~i~~i~~~~~-ipvi~~GGi~~---~~di~~~~~~Ga~gv~ 217 (234)
T cd04732 170 RDGTLSGP-NFELYKELAAATG-IPVIASGGVSS---LDDIKALKELGVAGVI 217 (234)
T ss_pred CCCccCCC-CHHHHHHHHHhcC-CCEEEecCCCC---HHHHHHHHHCCCCEEE
Confidence 5554442 2567777777654 45555432211 1235566677888763
No 303
>COG1242 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=92.24 E-value=7.7 Score=38.03 Aligned_cols=82 Identities=20% Similarity=0.220 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHHCCcCEEEE------cCC-------CCC---C
Q 018252 240 SLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISL------GDT-------IGV---G 303 (359)
Q Consensus 240 ~l~~i~~~i~~Ak~~G~~V~~~is~~fg~~~~~r~~~e~l~~~a~~l~~~Gad~I~L------~DT-------~G~---~ 303 (359)
-++.+.++++.+|++|++|...+. +|.|-+ +.+...+-++.+.+.|++.|-| .-| .|- +
T Consensus 166 d~~~y~dav~r~rkrgIkvc~HiI--~GLPgE---~~~~mleTak~v~~~~v~GIKlH~LhvvkgT~m~k~Y~~G~l~~l 240 (312)
T COG1242 166 DFACYVDAVKRLRKRGIKVCTHLI--NGLPGE---TRDEMLETAKIVAELGVDGIKLHPLHVVKGTPMEKMYEKGRLKFL 240 (312)
T ss_pred chHHHHHHHHHHHHcCCeEEEEEe--eCCCCC---CHHHHHHHHHHHHhcCCceEEEEEEEEecCChHHHHHHcCCceec
Confidence 356678999999999999999996 898866 6788999999999999986543 222 133 3
Q ss_pred cHHHHHHHHHHHHHhCCCceEEEE
Q 018252 304 TPGTVVPMLEAVMAVVPVEKLAVH 327 (359)
Q Consensus 304 ~P~~v~~lv~~l~~~~p~~~L~~H 327 (359)
+-+++.+++....+.+|. .+-+|
T Consensus 241 s~eeYv~~~~d~le~lpp-~vviH 263 (312)
T COG1242 241 SLEEYVELVCDQLEHLPP-EVVIH 263 (312)
T ss_pred cHHHHHHHHHHHHHhCCc-ceEEE
Confidence 445555555556666664 46666
No 304
>PRK14330 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=92.14 E-value=9.9 Score=38.99 Aligned_cols=144 Identities=15% Similarity=0.141 Sum_probs=83.1
Q ss_pred CCCHHHHHHHHHHHHhCCCCEEEEec--c-CCCCCcCCCCCHHHHHHHhhhcCCCeEEEE---eCC---hHhHHHHHHcC
Q 018252 144 TVPTGVKVELIRRLVSSGLPVVEATS--F-VSPKWVPQLADARDVMEAVRDLEGARLPVL---TPN---LKGFEAAIAAG 214 (359)
Q Consensus 144 ~~~~~~k~~ia~~L~~aGv~~IEvG~--f-vspk~vPq~~D~~ev~~~l~~~~~~~l~~l---~~n---~~gie~a~~aG 214 (359)
..+.++.++=++.|.+.|++.|-+.. + ...+......+..++++.+...++.....+ -|. .+-++...++|
T Consensus 168 sr~~e~Iv~Ei~~l~~~g~kei~l~~~n~~~yg~~~~~~~~l~~Ll~~~~~~~~~~~~~~~~~~p~~~~~ell~~l~~~~ 247 (434)
T PRK14330 168 SRPMEDILEEVEKLAKQGYREVTFLGQNVDAYGKDLKDGSSLAKLLEEASKIEGIERIWFLTSYPTDFSDELIEVIANSP 247 (434)
T ss_pred cCCHHHHHHHHHHHHHCCCcEEEEEEecccccccCCCCCccHHHHHHHHHhcCCceEEEEecCChhhcCHHHHHHHhcCC
Confidence 46788888888999999999886642 1 100000011233445555545555432211 132 23355555566
Q ss_pred --CCEEEEec-CCchHHHHhhhcCCHHHHHHHHHHHHHHHHhC--CCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHHC
Q 018252 215 --AKEVAIFA-SASEAFSKSNINCSIEDSLVRYRAVAHAAKVL--SIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDM 289 (359)
Q Consensus 215 --v~~V~i~~-s~S~~~~~~n~~~t~~e~l~~i~~~i~~Ak~~--G~~V~~~is~~fg~~~~~r~~~e~l~~~a~~l~~~ 289 (359)
.+.+++-+ +.|+--. ..+|+.. ..+.+.++++.+++. |+.+.++++ +|.|.+ +.+.+.+.++.+.+.
T Consensus 248 ~~~~~l~iglQSgsd~vL-k~M~R~~--~~~~~~~~i~~lr~~~~~i~i~~d~I--vGfPgE---T~edf~~tl~fi~~~ 319 (434)
T PRK14330 248 KVAKSIHLPVQSGSNRIL-KLMNRRY--TREEYLELIEKIRSKVPDASISSDII--VGFPTE---TEEDFMETVDLVEKA 319 (434)
T ss_pred cccCceecCcCCCCHHHH-HhcCCCC--CHHHHHHHHHHHHHhCCCCEEEEEEE--EECCCC---CHHHHHHHHHHHHhc
Confidence 56777765 4444333 2455532 245666778888886 667777775 887765 556666677777777
Q ss_pred CcCEEE
Q 018252 290 GCFEIS 295 (359)
Q Consensus 290 Gad~I~ 295 (359)
+.+.+.
T Consensus 320 ~~~~~~ 325 (434)
T PRK14330 320 QFERLN 325 (434)
T ss_pred CCCEEe
Confidence 777554
No 305
>TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist. This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase.
Probab=92.13 E-value=2.4 Score=41.34 Aligned_cols=95 Identities=12% Similarity=0.046 Sum_probs=67.6
Q ss_pred HHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHHCCcCEEEEcCCC--CCCc-HHHHHHHHHHHHHhCC
Q 018252 244 YRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTI--GVGT-PGTVVPMLEAVMAVVP 320 (359)
Q Consensus 244 i~~~i~~Ak~~G~~V~~~is~~fg~~~~~r~~~e~l~~~a~~l~~~Gad~I~L~DT~--G~~~-P~~v~~lv~~l~~~~p 320 (359)
++++++.|++.++-|- +|.+ ++.+.+..+++.+.+.+...|--.-.. .... ...+..++..+.+..+
T Consensus 4 ~~~~l~~A~~~~yav~-----Afn~-----~n~e~~~avi~aAe~~~~PvIl~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 73 (282)
T TIGR01859 4 GKEILQKAKKEGYAVG-----AFNF-----NNLEWTQAILEAAEEENSPVIIQVSEGAIKYMGGYKMAVAMVKTLIERMS 73 (282)
T ss_pred HHHHHHHHHHCCceEE-----EEEE-----CCHHHHHHHHHHHHHhCCCEEEEcCcchhhccCcHHHHHHHHHHHHHHCC
Confidence 4678889999999763 3433 478889999999999887654433222 2212 4567777887777775
Q ss_pred CceEEEEeCCCCCcHHHHHHHHHHcCCCEE
Q 018252 321 VEKLAVHLHDTYGQSLPNILISLQVSPMHA 350 (359)
Q Consensus 321 ~~~L~~H~HNd~GLAlANalaAv~AGa~~I 350 (359)
.+|+.+|. |-|.-+..+..|+++|++.|
T Consensus 74 ~vpv~lhl--DH~~~~e~i~~ai~~Gf~sV 101 (282)
T TIGR01859 74 IVPVALHL--DHGSSYESCIKAIKAGFSSV 101 (282)
T ss_pred CCeEEEEC--CCCCCHHHHHHHHHcCCCEE
Confidence 36899884 44556889999999999865
No 306
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=92.02 E-value=2 Score=44.40 Aligned_cols=162 Identities=17% Similarity=0.136 Sum_probs=92.9
Q ss_pred HHHHHHHHHHHhCCCCEEEEeccCCCCCcCCCCCHHHHHHHhhh-cCCCeEEE-EeCChHhHHHHHHcCCCEEEEec-CC
Q 018252 148 GVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRD-LEGARLPV-LTPNLKGFEAAIAAGAKEVAIFA-SA 224 (359)
Q Consensus 148 ~~k~~ia~~L~~aGv~~IEvG~fvspk~vPq~~D~~ev~~~l~~-~~~~~l~~-l~~n~~gie~a~~aGv~~V~i~~-s~ 224 (359)
+.-.+-++.|.++|++.|++-..- .. .....+.++.+++ .+++.+.+ -+-+.++.+.++++|++-|.+-+ |.
T Consensus 223 ~~~~~r~~~L~~aG~d~I~vd~a~-g~----~~~~~~~i~~i~~~~~~~~vi~G~v~t~~~a~~l~~aGad~i~vg~g~G 297 (450)
T TIGR01302 223 EFDKERAEALVKAGVDVIVIDSSH-GH----SIYVIDSIKEIKKTYPDLDIIAGNVATAEQAKALIDAGADGLRVGIGPG 297 (450)
T ss_pred hhHHHHHHHHHHhCCCEEEEECCC-Cc----HhHHHHHHHHHHHhCCCCCEEEEeCCCHHHHHHHHHhCCCEEEECCCCC
Confidence 455677779999999999997521 10 0122333344443 36665544 44577899999999999988753 21
Q ss_pred chHHHHhhhcCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHHCCcCEEEEcCCCCCCc
Q 018252 225 SEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGVGT 304 (359)
Q Consensus 225 S~~~~~~n~~~t~~e~l~~i~~~i~~Ak~~G~~V~~~is~~fg~~~~~r~~~e~l~~~a~~l~~~Gad~I~L~DT~G~~~ 304 (359)
|--..+...++... .+..+.++.+.+++.++++. ++++-.++.+ +++ +.++||+.+.+.-.
T Consensus 298 ~~~~t~~~~~~g~p-~~~~i~~~~~~~~~~~vpvi---------adGGi~~~~d---i~k-Ala~GA~~V~~G~~----- 358 (450)
T TIGR01302 298 SICTTRIVAGVGVP-QITAVYDVAEYAAQSGIPVI---------ADGGIRYSGD---IVK-ALAAGADAVMLGSL----- 358 (450)
T ss_pred cCCccceecCCCcc-HHHHHHHHHHHHhhcCCeEE---------EeCCCCCHHH---HHH-HHHcCCCEEEECch-----
Confidence 11111112233333 34566777788888888762 2445555554 444 44579999987652
Q ss_pred HHHHHHHHHHHHHhCCCceE---EEEeCCCCCcHHHHHHH
Q 018252 305 PGTVVPMLEAVMAVVPVEKL---AVHLHDTYGQSLPNILI 341 (359)
Q Consensus 305 P~~v~~lv~~l~~~~p~~~L---~~H~HNd~GLAlANala 341 (359)
+..- ++.|+..+ +-+.-.-+|||-..|+.
T Consensus 359 -------~a~~-~e~pg~~~~~~g~~~k~yrgm~s~~a~~ 390 (450)
T TIGR01302 359 -------LAGT-TESPGEYEIINGRRYKQYRGMGSLGAMT 390 (450)
T ss_pred -------hhcC-CcCCCceEEECCEEEEEEeccchHHHHh
Confidence 2211 12344222 23445567888765553
No 307
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=92.00 E-value=0.86 Score=47.82 Aligned_cols=73 Identities=11% Similarity=0.062 Sum_probs=54.7
Q ss_pred CHHHHHHHHHHHHHCCcCEEEEcCCCCCCcHHHHHHHHHHHHHhCCCceEEEEeCCCCCcHHHHHHHHHHcCCCEEecee
Q 018252 275 PPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQVSPMHAKPCF 354 (359)
Q Consensus 275 ~~e~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~lv~~l~~~~p~~~L~~H~HNd~GLAlANalaAv~AGa~~ID~tl 354 (359)
.++. .+.++++.++|++.|.| |+.- +....+.+.++.+++.+|+++|.. -.......+..++++||+.|.+++
T Consensus 239 ~~~~-~~~~~~l~~ag~d~i~i-d~a~-G~s~~~~~~i~~ik~~~~~~~v~a----G~V~t~~~a~~~~~aGad~I~vg~ 311 (495)
T PTZ00314 239 RPED-IERAAALIEAGVDVLVV-DSSQ-GNSIYQIDMIKKLKSNYPHVDIIA----GNVVTADQAKNLIDAGADGLRIGM 311 (495)
T ss_pred CHHH-HHHHHHHHHCCCCEEEE-ecCC-CCchHHHHHHHHHHhhCCCceEEE----CCcCCHHHHHHHHHcCCCEEEECC
Confidence 3444 78899999999999887 4432 333445789999999999888877 233444788999999999997654
No 308
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=91.99 E-value=2 Score=41.70 Aligned_cols=81 Identities=9% Similarity=-0.015 Sum_probs=64.7
Q ss_pred CCCCHHHHHHHHHHHHHCCcCEEEEcCCCCCC---cHHHHHHHHHHHHHhCC-CceEEEEeCCCCCcHHHHHHHHHHcCC
Q 018252 272 GAIPPSKVAYVAKELHDMGCFEISLGDTIGVG---TPGTVVPMLEAVMAVVP-VEKLAVHLHDTYGQSLPNILISLQVSP 347 (359)
Q Consensus 272 ~r~~~e~l~~~a~~l~~~Gad~I~L~DT~G~~---~P~~v~~lv~~l~~~~p-~~~L~~H~HNd~GLAlANalaAv~AGa 347 (359)
++.|.+.+.++++.+.+.|++-|.+.-|.|=+ +.++-.++++.+.+... .+++-+|.-.+..-++..+..|-++||
T Consensus 16 g~iD~~~l~~l~~~l~~~Gv~gi~v~GstGE~~~Ls~eEr~~l~~~~~~~~~~~~pvi~gv~~~t~~~i~~a~~a~~~Ga 95 (289)
T cd00951 16 GSFDEDAYRAHVEWLLSYGAAALFAAGGTGEFFSLTPDEYAQVVRAAVEETAGRVPVLAGAGYGTATAIAYAQAAEKAGA 95 (289)
T ss_pred CCcCHHHHHHHHHHHHHcCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCCCCCEEEecCCCHHHHHHHHHHHHHhCC
Confidence 58999999999999999999999999999854 56667777777777653 356666655466777888899999999
Q ss_pred CEEec
Q 018252 348 MHAKP 352 (359)
Q Consensus 348 ~~ID~ 352 (359)
+.|=.
T Consensus 96 d~v~~ 100 (289)
T cd00951 96 DGILL 100 (289)
T ss_pred CEEEE
Confidence 98743
No 309
>PRK11320 prpB 2-methylisocitrate lyase; Provisional
Probab=91.98 E-value=2.9 Score=41.00 Aligned_cols=133 Identities=13% Similarity=0.208 Sum_probs=83.5
Q ss_pred HHHHHcCCCEEEEec-CCc-hHHHHhhhc-CCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHH
Q 018252 208 EAAIAAGAKEVAIFA-SAS-EAFSKSNIN-CSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAK 284 (359)
Q Consensus 208 e~a~~aGv~~V~i~~-s~S-~~~~~~n~~-~t~~e~l~~i~~~i~~Ak~~G~~V~~~is~~fg~~~~~r~~~e~l~~~a~ 284 (359)
..+-.+|.+-+.+.- +++ -.+-.--.+ .+.++.++.++.+.+. -.++|.+.+- .|--++..+...++
T Consensus 31 ri~e~~Gf~ai~~Sg~~~a~~~lG~PD~g~l~~~e~~~~~~~I~~~---~~iPviaD~d-------~GyG~~~~v~r~V~ 100 (292)
T PRK11320 31 LLAERAGFKAIYLSGGGVAAASLGLPDLGITTLDDVLIDVRRITDA---CDLPLLVDID-------TGFGGAFNIARTVK 100 (292)
T ss_pred HHHHHcCCCEEEeCHHHHHhHhcCCCCCCCCCHHHHHHHHHHHHhc---cCCCEEEECC-------CCCCCHHHHHHHHH
Confidence 444456777766531 111 111111112 4677888777776654 3577754443 22228889999999
Q ss_pred HHHHCCcCEEEEcCCC-----C------CCcHHHHHHHHHHHHHhCCCceEEEEe------CCCCCcHHHHHHHHHHcCC
Q 018252 285 ELHDMGCFEISLGDTI-----G------VGTPGTVVPMLEAVMAVVPVEKLAVHL------HDTYGQSLPNILISLQVSP 347 (359)
Q Consensus 285 ~l~~~Gad~I~L~DT~-----G------~~~P~~v~~lv~~l~~~~p~~~L~~H~------HNd~GLAlANalaAv~AGa 347 (359)
++.++|+--|.|-|.+ | +..++++.+-|++.++.-.+..+-+=. .+.+--++.-+.+-.+|||
T Consensus 101 ~~~~aGaagi~IEDq~~pK~cg~~~~~~lv~~ee~~~kI~Aa~~a~~~~d~~IiARTDa~~~~g~deAI~Ra~aY~eAGA 180 (292)
T PRK11320 101 SMIKAGAAAVHIEDQVGAKRCGHRPNKEIVSQEEMVDRIKAAVDARTDPDFVIMARTDALAVEGLDAAIERAQAYVEAGA 180 (292)
T ss_pred HHHHcCCeEEEEecCCCccccCCCCCCcccCHHHHHHHHHHHHHhccCCCeEEEEecCcccccCHHHHHHHHHHHHHcCC
Confidence 9999999999999987 3 345677777777777654222222211 2234467888999999999
Q ss_pred CEE
Q 018252 348 MHA 350 (359)
Q Consensus 348 ~~I 350 (359)
|.|
T Consensus 181 D~i 183 (292)
T PRK11320 181 DMI 183 (292)
T ss_pred CEE
Confidence 976
No 310
>cd01321 ADGF Adenosine deaminase-related growth factors (ADGF), a novel family of secreted growth-factors with sequence similarty to adenosine deaminase.
Probab=91.95 E-value=6 Score=39.54 Aligned_cols=142 Identities=13% Similarity=0.044 Sum_probs=87.2
Q ss_pred HHHHHHcCCCEEEEecCCchHHHHhhhcCCHHHHHHHHHHHHHHHHh-C--CCcEEEEEeeeecCCCCCC-CCHHHHHHH
Q 018252 207 FEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKV-L--SIPVRGYVSCVVGCPVEGA-IPPSKVAYV 282 (359)
Q Consensus 207 ie~a~~aGv~~V~i~~s~S~~~~~~n~~~t~~e~l~~i~~~i~~Ak~-~--G~~V~~~is~~fg~~~~~r-~~~e~l~~~ 282 (359)
++.+.+.|+..+-+..+-...+...+-|.+.++.++.+.+.++.+++ . |+.++.-++ . .| .+++...+.
T Consensus 76 ~~d~~~dgV~Y~Eir~~P~~~~~~~~~g~~~~~v~~av~~~~~~~~~~~~~~i~v~lI~~--~-----~R~~~~e~~~e~ 148 (345)
T cd01321 76 LEELYEDNVQYVELRSSFSPLYDLDGREYDYEETVQLLEEVVEKFKKTHPDFIGLKIIYA--T-----LRNFNDSEIKES 148 (345)
T ss_pred HHHHHHcCCEEEEEeecchHHHHccCCCCCHHHHHHHHHHHHHHHHHhCCCCceEEEEEE--e-----cCCCCHHHHHHH
Confidence 56666778877666553222233324568899999999887777644 3 455544333 1 13 466665566
Q ss_pred HHHHHHC---C---cCEEEEcCCCCC-CcHHHHHHHHHHHHHhCCCceEEEEeCCCCC--cH-HHHHHHHHHcCCCEEec
Q 018252 283 AKELHDM---G---CFEISLGDTIGV-GTPGTVVPMLEAVMAVVPVEKLAVHLHDTYG--QS-LPNILISLQVSPMHAKP 352 (359)
Q Consensus 283 a~~l~~~---G---ad~I~L~DT~G~-~~P~~v~~lv~~l~~~~p~~~L~~H~HNd~G--LA-lANalaAv~AGa~~ID~ 352 (359)
++.+..+ . +-.|.|+-.=.. ..|..+.+.+...++.-+++++.+|+=-..+ .. ..|...|+..|+++|.=
T Consensus 149 ~~~a~~~~~~~~~~VvGidL~G~E~~~~~~~~f~~~f~~ar~~g~~l~~t~HAGE~~~~~~~~~~~v~~al~lg~~RIGH 228 (345)
T cd01321 149 MEQCLNLKKKFPDFIAGFDLVGQEDAGRPLLDFLPQLLWFPKQCAEIPFFFHAGETNGDGTETDENLVDALLLNTKRIGH 228 (345)
T ss_pred HHHHHHHHHhCCCeEEEEecCCCccCCCCHHHHHHHHHHHHHhCCCCceEeecCCCcCCCCCChhHHHHHHHhCCCcCcc
Confidence 6555543 1 223333322212 2477888888888887545789999876553 32 34888888999999975
Q ss_pred eee
Q 018252 353 CFT 355 (359)
Q Consensus 353 tl~ 355 (359)
.+.
T Consensus 229 G~~ 231 (345)
T cd01321 229 GFA 231 (345)
T ss_pred ccc
Confidence 543
No 311
>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family. DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.
Probab=91.92 E-value=5.7 Score=36.40 Aligned_cols=88 Identities=20% Similarity=0.154 Sum_probs=56.5
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHCCcCEEEEcCCCCCC---cHHHHHHHHHHHHHhCCCceEEEEeCCCCCcH----HHHH
Q 018252 267 GCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGVG---TPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQS----LPNI 339 (359)
Q Consensus 267 g~~~~~r~~~e~l~~~a~~l~~~Gad~I~L~DT~G~~---~P~~v~~lv~~l~~~~p~~~L~~H~HNd~GLA----lANa 339 (359)
+.|.+. .+.+....-++++.++|||.|.+.=-.|.. .-..+.+-+..+++...+.++-+ ...+-.+- ..-+
T Consensus 60 ~fp~g~-~~~~~k~~eve~A~~~GAdevdvv~~~g~~~~~~~~~~~~ei~~v~~~~~g~~lkv-I~e~~~l~~~~i~~a~ 137 (203)
T cd00959 60 GFPLGA-TTTEVKVAEAREAIADGADEIDMVINIGALKSGDYEAVYEEIAAVVEACGGAPLKV-ILETGLLTDEEIIKAC 137 (203)
T ss_pred ecCCCC-CcHHHHHHHHHHHHHcCCCEEEEeecHHHHhCCCHHHHHHHHHHHHHhcCCCeEEE-EEecCCCCHHHHHHHH
Confidence 345544 555666666888999999999888778854 33557777777777654443322 12222221 2346
Q ss_pred HHHHHcCCCEEeceeee
Q 018252 340 LISLQVSPMHAKPCFTF 356 (359)
Q Consensus 340 laAv~AGa~~ID~tl~~ 356 (359)
..|+++|||+|-++.-|
T Consensus 138 ria~e~GaD~IKTsTG~ 154 (203)
T cd00959 138 EIAIEAGADFIKTSTGF 154 (203)
T ss_pred HHHHHhCCCEEEcCCCC
Confidence 78999999999998443
No 312
>PRK14336 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=91.92 E-value=7.4 Score=39.82 Aligned_cols=145 Identities=19% Similarity=0.219 Sum_probs=83.8
Q ss_pred CCCCHHHHHHHHHHHHhCCCCEEEEec--cC-CCCCcCCCCCHHHHHHHhhhcCCC-eEEEEe--CC---hHhHHHHHHc
Q 018252 143 NTVPTGVKVELIRRLVSSGLPVVEATS--FV-SPKWVPQLADARDVMEAVRDLEGA-RLPVLT--PN---LKGFEAAIAA 213 (359)
Q Consensus 143 ~~~~~~~k~~ia~~L~~aGv~~IEvG~--fv-spk~vPq~~D~~ev~~~l~~~~~~-~l~~l~--~n---~~gie~a~~a 213 (359)
...+.++.++=++.|.+.|++.|-+.. +. .....+......++++.+...++. ++...+ |. .+-++...+.
T Consensus 151 rsrs~e~Iv~Ei~~l~~~G~~ei~l~~~~~~~yg~d~~~~~~l~~Ll~~l~~~~~~~~ir~~~~~p~~i~~ell~~l~~~ 230 (418)
T PRK14336 151 KSRSIAEIGCEVAELVRRGSREVVLLGQNVDSYGHDLPEKPCLADLLSALHDIPGLLRIRFLTSHPKDISQKLIDAMAHL 230 (418)
T ss_pred ccCCHHHHHHHHHHHHHCCCeEEEEEecCccccccCCCCcccHHHHHHHHHhcCCccEEEEeccChhhcCHHHHHHHHhc
Confidence 357789999999999999999887753 11 100001112344555555554442 333333 42 2234434343
Q ss_pred --CCCEEEEec-CCchHHHHhhhcCCHHHHHHHHHHHHHHHHhC--CCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHH
Q 018252 214 --GAKEVAIFA-SASEAFSKSNINCSIEDSLVRYRAVAHAAKVL--SIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHD 288 (359)
Q Consensus 214 --Gv~~V~i~~-s~S~~~~~~n~~~t~~e~l~~i~~~i~~Ak~~--G~~V~~~is~~fg~~~~~r~~~e~l~~~a~~l~~ 288 (359)
+...+++.+ +.|+--.+ .+|+.. ..+.+.++++.+++. |+.+.+++. +|.|.+ +.+.+.+..+-+.+
T Consensus 231 ~~~~~~l~lglQSgsd~vLk-~M~R~~--~~~~~~~~i~~lr~~~pgi~i~~d~I--vGfPGE---T~edf~~tl~fi~~ 302 (418)
T PRK14336 231 PKVCRSLSLPVQAGDDTILA-AMRRGY--TNQQYRELVERLKTAMPDISLQTDLI--VGFPSE---TEEQFNQSYKLMAD 302 (418)
T ss_pred CccCCceecCCCcCCHHHHH-HhCCCC--CHHHHHHHHHHHHhhCCCCEEEEEEE--EECCCC---CHHHHHHHHHHHHh
Confidence 477777765 44444333 344432 244566778888887 888887776 777765 45566666666666
Q ss_pred CCcCEEE
Q 018252 289 MGCFEIS 295 (359)
Q Consensus 289 ~Gad~I~ 295 (359)
.+.+.+.
T Consensus 303 ~~~~~~~ 309 (418)
T PRK14336 303 IGYDAIH 309 (418)
T ss_pred cCCCEEE
Confidence 7766543
No 313
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=91.86 E-value=1.2 Score=43.07 Aligned_cols=81 Identities=12% Similarity=0.053 Sum_probs=69.0
Q ss_pred CCCCHHHHHHHHHHHHHCCcCEEEEcCCCC---CCcHHHHHHHHHHHHHhCCC-ceEEEEe-CCCCCcHHHHHHHHHHcC
Q 018252 272 GAIPPSKVAYVAKELHDMGCFEISLGDTIG---VGTPGTVVPMLEAVMAVVPV-EKLAVHL-HDTYGQSLPNILISLQVS 346 (359)
Q Consensus 272 ~r~~~e~l~~~a~~l~~~Gad~I~L~DT~G---~~~P~~v~~lv~~l~~~~p~-~~L~~H~-HNd~GLAlANalaAv~AG 346 (359)
+..|.+-+.+.++.+.+.|++-|.++-|+| .+++++-.++++.+.+..++ ++|-+|. +++..-++.-+..|-++|
T Consensus 17 g~iD~~~l~~~i~~l~~~Gv~gi~~~Gs~GE~~~ls~~Er~~~~~~~~~~~~~~~~vi~gv~~~~~~~~i~~a~~a~~~G 96 (292)
T PRK03170 17 GSVDFAALRKLVDYLIANGTDGLVVVGTTGESPTLTHEEHEELIRAVVEAVNGRVPVIAGTGSNSTAEAIELTKFAEKAG 96 (292)
T ss_pred CCcCHHHHHHHHHHHHHcCCCEEEECCcCCccccCCHHHHHHHHHHHHHHhCCCCcEEeecCCchHHHHHHHHHHHHHcC
Confidence 578999999999999999999999999999 56788888888888887653 5666654 678889999999999999
Q ss_pred CCEEec
Q 018252 347 PMHAKP 352 (359)
Q Consensus 347 a~~ID~ 352 (359)
++.|=.
T Consensus 97 ~d~v~~ 102 (292)
T PRK03170 97 ADGALV 102 (292)
T ss_pred CCEEEE
Confidence 998754
No 314
>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism.
Probab=91.81 E-value=7.4 Score=37.85 Aligned_cols=11 Identities=9% Similarity=0.006 Sum_probs=5.0
Q ss_pred HHHHHHhCCCc
Q 018252 247 VAHAAKVLSIP 257 (359)
Q Consensus 247 ~i~~Ak~~G~~ 257 (359)
.++.|++.|..
T Consensus 87 ~a~~A~~~Gad 97 (294)
T TIGR02313 87 LTKFAEEAGAD 97 (294)
T ss_pred HHHHHHHcCCC
Confidence 33444455554
No 315
>PRK09358 adenosine deaminase; Provisional
Probab=91.77 E-value=5.2 Score=39.34 Aligned_cols=134 Identities=15% Similarity=0.051 Sum_probs=77.9
Q ss_pred HhHHHHHHcCCCEEEEecCCchHHHHhhhcCCHHHHHHHHHHHHHHH-HhCCCcEEEEEeeeecCCCCCCCCHHHHHHHH
Q 018252 205 KGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAA-KVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVA 283 (359)
Q Consensus 205 ~gie~a~~aGv~~V~i~~s~S~~~~~~n~~~t~~e~l~~i~~~i~~A-k~~G~~V~~~is~~fg~~~~~r~~~e~l~~~a 283 (359)
..++.++..|+..+.++.. +.+. .+.|.+.++.++.+.+.++.| ++.|+.++..++ +. . ..+++...+.+
T Consensus 85 ~~~~e~~~~Gvty~E~~~~--p~~~-~~~gl~~~~~~~a~~~~~~~a~~~~gi~~~li~~--~~--r--~~~~~~~~~~~ 155 (340)
T PRK09358 85 EYLEDAAADGVVYAEIRFD--PQLH-TERGLPLEEVVEAVLDGLRAAEAEFGISVRLILC--FM--R--HFGEEAAAREL 155 (340)
T ss_pred HHHHHHHHcCCEEEEEEeC--hhhh-hhcCCCHHHHHHHHHHHHHHHHHhcCceEEEEEE--ec--C--CCCHHHHHHHH
Confidence 3466777789987666543 2221 234778888888887776665 456776654433 11 1 12344445555
Q ss_pred HHHHH--CCcC--EEEEcCCCCCCcHHHHHHHHHHHHHhCCCceEEEEeCCCCCcHHHHHHHHHH-cCCCEEe
Q 018252 284 KELHD--MGCF--EISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQ-VSPMHAK 351 (359)
Q Consensus 284 ~~l~~--~Gad--~I~L~DT~G~~~P~~v~~lv~~l~~~~p~~~L~~H~HNd~GLAlANalaAv~-AGa~~ID 351 (359)
+.+.+ .+.. .|.|+-.-...+|..+.+.++..++. ++++.+|+.-..+ ..+...|++ .|+++|.
T Consensus 156 ~~~~~~~~~~~vvg~~l~g~e~~~~~~~~~~~~~~A~~~--g~~~~~H~~E~~~--~~~~~~al~~lg~~ri~ 224 (340)
T PRK09358 156 EALAARYRDDGVVGFDLAGDELGFPPSKFARAFDRARDA--GLRLTAHAGEAGG--PESIWEALDELGAERIG 224 (340)
T ss_pred HHHHHHhcCCcEEEEeCCCcCCCCCHHHHHHHHHHHHHC--CCCeEEcCCCCCc--hhHHHHHHHHcCCcccc
Confidence 54544 3322 33443221224677787877776663 4678888876443 345667777 7988764
No 316
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=91.72 E-value=4.2 Score=35.89 Aligned_cols=119 Identities=12% Similarity=0.015 Sum_probs=66.1
Q ss_pred HHHHHHcCCCEEEEecCCchHHHHhhhcCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCC-C--CCCC------HH
Q 018252 207 FEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPV-E--GAIP------PS 277 (359)
Q Consensus 207 ie~a~~aGv~~V~i~~s~S~~~~~~n~~~t~~e~l~~i~~~i~~Ak~~G~~V~~~is~~fg~~~-~--~r~~------~e 277 (359)
++.+.++|.+.|.+.......... ....+.++.+.++++|+++...-........ . .... .+
T Consensus 1 l~~~~~~G~~~vE~~~~~~~~~~~---------~~~~~~~~~~~~~~~gl~i~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 71 (213)
T PF01261_consen 1 LEAAAEAGFDGVELRFDDGQPWDE---------KDDEAEELRRLLEDYGLKIASLHPPTNFWSPDEENGSANDEREEALE 71 (213)
T ss_dssp HHHHHHTTHSEEEEEHHHHSHHTH---------HHHHHHHHHHHHHHTTCEEEEEEEEESSSCTGTTSTTSSSHHHHHHH
T ss_pred ChHHHHcCCCEEEEecCCCccccc---------chHHHHHHHHHHHHcCCeEEEEecccccccccccccCcchhhHHHHH
Confidence 456777888888886532111100 0345667778888889886432221221111 1 1123 56
Q ss_pred HHHHHHHHHHHCCcCEEEEc-----CCCCCCcHHHHHHHHHHHHHh---C--CCceEEEEeCCCCCc
Q 018252 278 KVAYVAKELHDMGCFEISLG-----DTIGVGTPGTVVPMLEAVMAV---V--PVEKLAVHLHDTYGQ 334 (359)
Q Consensus 278 ~l~~~a~~l~~~Gad~I~L~-----DT~G~~~P~~v~~lv~~l~~~---~--p~~~L~~H~HNd~GL 334 (359)
.+.+.++.+..+|++.+.+. ...+.........+++.+++. . -++.|.++.|.....
T Consensus 72 ~~~~~i~~a~~lg~~~i~~~~g~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~lE~~~~~~~ 138 (213)
T PF01261_consen 72 YLKKAIDLAKRLGAKYIVVHSGRYPSGPEDDTEENWERLAENLRELAEIAEEYGVRIALENHPGPFS 138 (213)
T ss_dssp HHHHHHHHHHHHTBSEEEEECTTESSSTTSSHHHHHHHHHHHHHHHHHHHHHHTSEEEEE-SSSSSS
T ss_pred HHHHHHHHHHHhCCCceeecCcccccccCCCHHHHHHHHHHHHHHHHhhhhhhcceEEEecccCccc
Confidence 77888888888898887776 222333334444444444432 1 146788888887775
No 317
>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=91.60 E-value=10 Score=34.26 Aligned_cols=173 Identities=18% Similarity=0.114 Sum_probs=93.8
Q ss_pred cCCCCccEEEeCCCcccCCCCCCCCCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcCCCCCHHHHHHHhhhc------CC
Q 018252 121 KGIPRFVKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDL------EG 194 (359)
Q Consensus 121 ~~~p~~V~I~D~TLRDG~Q~~~~~~~~~~k~~ia~~L~~aGv~~IEvG~fvspk~vPq~~D~~ev~~~l~~~------~~ 194 (359)
+.+|+-+.|.|..+- ..+.-.+.++.+.+.|++.|++-.... +..++.+.+++. -+
T Consensus 4 ~~~~~~~~it~~~~~----------~~~~~~~~~~~~~~~gv~~v~lr~~~~--------~~~~~~~~~~~~~~~~~~~~ 65 (212)
T PRK00043 4 MKLLRLYLITDSRDD----------SGRDLLEVVEAALEGGVTLVQLREKGL--------DTRERLELARALKELCRRYG 65 (212)
T ss_pred CCCCCEEEEECCccc----------ccccHHHHHHHHHhcCCCEEEEeCCCC--------CHHHHHHHHHHHHHHHHHhC
Confidence 456765666665221 112355678889999999999975321 122233333221 23
Q ss_pred CeEEEEeCChHhHHHHHHcCCCEEEEecCCchHHHHhhhcCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCC
Q 018252 195 ARLPVLTPNLKGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAI 274 (359)
Q Consensus 195 ~~l~~l~~n~~gie~a~~aGv~~V~i~~s~S~~~~~~n~~~t~~e~l~~i~~~i~~Ak~~G~~V~~~is~~fg~~~~~r~ 274 (359)
+.+ ++. ..++.+.++|++.|++.....+ ...++..+..|..+. ++ + .
T Consensus 66 ~~l--~~~--~~~~~a~~~gad~vh~~~~~~~------------------~~~~~~~~~~~~~~g--~~----~-----~ 112 (212)
T PRK00043 66 VPL--IVN--DRVDLALAVGADGVHLGQDDLP------------------VADARALLGPDAIIG--LS----T-----H 112 (212)
T ss_pred CeE--EEe--ChHHHHHHcCCCEEecCcccCC------------------HHHHHHHcCCCCEEE--Ee----C-----C
Confidence 333 332 4688999999999887432100 011222334455442 22 1 2
Q ss_pred CHHHHHHHHHHHHHCCcCEEEEc---CCC-CCCc-HHHHHHHHHHHHHhCCCceEEEEeCCCCCcHHHHHHHHHHcCCCE
Q 018252 275 PPSKVAYVAKELHDMGCFEISLG---DTI-GVGT-PGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQVSPMH 349 (359)
Q Consensus 275 ~~e~l~~~a~~l~~~Gad~I~L~---DT~-G~~~-P~~v~~lv~~l~~~~p~~~L~~H~HNd~GLAlANalaAv~AGa~~ 349 (359)
++++ +.++.+.|+|.|.+. +|. +-.. |..-.+.++.+++.++.+++..-+ |....|+-.++.+||+.
T Consensus 113 t~~e----~~~a~~~gaD~v~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~a~G----GI~~~~i~~~~~~Ga~g 184 (212)
T PRK00043 113 TLEE----AAAALAAGADYVGVGPIFPTPTKKDAKAPQGLEGLREIRAAVGDIPIVAIG----GITPENAPEVLEAGADG 184 (212)
T ss_pred CHHH----HHHHhHcCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHhcCCCCEEEEC----CcCHHHHHHHHHcCCCE
Confidence 4443 344557899999763 221 1111 111134555566555545565543 67778999999999998
Q ss_pred Eec
Q 018252 350 AKP 352 (359)
Q Consensus 350 ID~ 352 (359)
|=+
T Consensus 185 v~~ 187 (212)
T PRK00043 185 VAV 187 (212)
T ss_pred EEE
Confidence 853
No 318
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=91.46 E-value=13 Score=35.28 Aligned_cols=181 Identities=17% Similarity=0.071 Sum_probs=99.1
Q ss_pred HHHHHHHHHHHhCCCCEEEEeccCCCCCcCCCCCHHHHHHHhhhcCCC--eEEEEeCChHhHHHHHHcCCCEEEEecCCc
Q 018252 148 GVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGA--RLPVLTPNLKGFEAAIAAGAKEVAIFASAS 225 (359)
Q Consensus 148 ~~k~~ia~~L~~aGv~~IEvG~fvspk~vPq~~D~~ev~~~l~~~~~~--~l~~l~~n~~gie~a~~aGv~~V~i~~s~S 225 (359)
.+-+++++.+.+.|++.|=+.-...... ......++.+.+.+..++ .+.+=+++.++++.++.+|++.|-+-.+
T Consensus 30 ~dp~~~a~~~~~~G~~~l~v~Dl~~~~~--~~~~n~~~i~~i~~~~~~pv~~~GGi~s~~d~~~~~~~Ga~~vivgt~-- 105 (254)
T TIGR00735 30 GDPVELAQRYDEEGADELVFLDITASSE--GRTTMIDVVERTAETVFIPLTVGGGIKSIEDVDKLLRAGADKVSINTA-- 105 (254)
T ss_pred CCHHHHHHHHHHcCCCEEEEEcCCcccc--cChhhHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHHcCCCEEEEChh--
Confidence 3677899999999999987764322110 001112333434332333 3334557889999999999998866322
Q ss_pred hHHHHhhhcCCHHHHHHHHHHHHHHHHhCC-CcEEEEEeeeecCCC-----------C-CCCCHHHHHHHHHHHHHCCcC
Q 018252 226 EAFSKSNINCSIEDSLVRYRAVAHAAKVLS-IPVRGYVSCVVGCPV-----------E-GAIPPSKVAYVAKELHDMGCF 292 (359)
Q Consensus 226 ~~~~~~n~~~t~~e~l~~i~~~i~~Ak~~G-~~V~~~is~~fg~~~-----------~-~r~~~e~l~~~a~~l~~~Gad 292 (359)
.+. ..+.++++. +..| -.+.+.|-. ...+. . ...+.....++++.+.++|++
T Consensus 106 -~~~----------~p~~~~~~~---~~~~~~~iv~slD~-~~g~~~~~~~~~v~i~gw~~~~~~~~~~~~~~l~~~G~~ 170 (254)
T TIGR00735 106 -AVK----------NPELIYELA---DRFGSQCIVVAIDA-KRVYVNSYCWYEVYIYGGRESTGLDAVEWAKEVEKLGAG 170 (254)
T ss_pred -Hhh----------ChHHHHHHH---HHcCCCCEEEEEEe-ccCCCCCCccEEEEEeCCcccCCCCHHHHHHHHHHcCCC
Confidence 211 122223332 2334 334433321 11110 0 012345667899999999999
Q ss_pred EEEE--cCCCCCCcHHHHHHHHHHHHHhCCCceEEEEeCCCCCcHHHHHHHHHHcC-CCEEec
Q 018252 293 EISL--GDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQVS-PMHAKP 352 (359)
Q Consensus 293 ~I~L--~DT~G~~~P~~v~~lv~~l~~~~p~~~L~~H~HNd~GLAlANalaAv~AG-a~~ID~ 352 (359)
.|.+ -|..|.+.... .++++.+++..+ +|+-..+=-. ...-+..++..| |+-|=+
T Consensus 171 ~iivt~i~~~g~~~g~~-~~~~~~i~~~~~-ipvia~GGi~---s~~di~~~~~~g~~dgv~~ 228 (254)
T TIGR00735 171 EILLTSMDKDGTKSGYD-LELTKAVSEAVK-IPVIASGGAG---KPEHFYEAFTKGKADAALA 228 (254)
T ss_pred EEEEeCcCcccCCCCCC-HHHHHHHHHhCC-CCEEEeCCCC---CHHHHHHHHHcCCcceeeE
Confidence 9988 56666544433 356777777754 5666544111 123344556666 777543
No 319
>PTZ00300 pyruvate kinase; Provisional
Probab=91.45 E-value=14 Score=38.51 Aligned_cols=190 Identities=13% Similarity=0.082 Sum_probs=111.0
Q ss_pred CCCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcCCCCCHHHHHHHhhhc-CCCeEEEEeCChHhHHHHHH--cCCCEEEE
Q 018252 144 TVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDL-EGARLPVLTPNLKGFEAAIA--AGAKEVAI 220 (359)
Q Consensus 144 ~~~~~~k~~ia~~L~~aGv~~IEvG~fvspk~vPq~~D~~ev~~~l~~~-~~~~l~~l~~n~~gie~a~~--aGv~~V~i 220 (359)
.++..++..| +...+.|++.|=+.| +.. ..|..++.+.+... .++.+.+-+.+.+++++.-+ .++|.|.+
T Consensus 144 ~ltekD~~dI-~~ald~gvd~I~~Sf-Vrs-----aeDv~~vr~~l~~~~~~~~IiaKIEt~eav~nldeI~~~~DgImV 216 (454)
T PTZ00300 144 AVSAKDCADL-QFGVEQGVDMIFASF-IRS-----AEQVGEVRKALGAKGGDIMIICKIENHQGVQNIDSIIEESDGIMV 216 (454)
T ss_pred CCChhhHHHH-HHHHHCCCCEEEECC-CCC-----HHHHHHHHHHHHhcCCCceEEEEECCHHHHHhHHHHHHhCCEEEE
Confidence 4566666665 556689999986654 332 24556666666432 34556666667666654432 56777665
Q ss_pred ecCCchHHHHhhhcCCHHHHHHHHHHHHHHHHhCCCcEEEE--Eeee-ecCCCCCCCCHHHHHHHHHHHHHCCcCEEEE-
Q 018252 221 FASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGY--VSCV-VGCPVEGAIPPSKVAYVAKELHDMGCFEISL- 296 (359)
Q Consensus 221 ~~s~S~~~~~~n~~~t~~e~l~~i~~~i~~Ak~~G~~V~~~--is~~-fg~~~~~r~~~e~l~~~a~~l~~~Gad~I~L- 296 (359)
- --|+-. -...++.....+.+++.|+++|..+... +... .-+| +-+..++.+++.++.+ |+|.|.|
T Consensus 217 a--RGDLgv----ei~~e~vp~~Qk~Ii~~~~~~gkpvI~ATQmLeSM~~~p---~PTRAEvsDVanAv~d-G~DavMLS 286 (454)
T PTZ00300 217 A--RGDLGV----EIPAEKVVVAQKILISKCNVAGKPVICATQMLESMTYNP---RPTRAEVSDVANAVFN-GADCVMLS 286 (454)
T ss_pred e--cchhhh----hcChHHHHHHHHHHHHHHHHcCCCEEEECchHHHHhhCC---CCCchhHHHHHHHHHh-CCcEEEEe
Confidence 2 112211 1224566666788999999999987321 1000 0122 3355677788887776 9999999
Q ss_pred cCCCCCCcHHHHHHHHHHHHHhCCCc-----eEEE---EeCC----CCCcHHHHHHHHHHcCCCEE
Q 018252 297 GDTIGVGTPGTVVPMLEAVMAVVPVE-----KLAV---HLHD----TYGQSLPNILISLQVSPMHA 350 (359)
Q Consensus 297 ~DT~G~~~P~~v~~lv~~l~~~~p~~-----~L~~---H~HN----d~GLAlANalaAv~AGa~~I 350 (359)
+-|+=-..|.+..+.+..+....... .+.. +..+ ...++.+...+|...+++.|
T Consensus 287 ~ETA~G~yP~eaV~~m~~I~~~aE~~~~~~~~~~~~~~~~~~~~~~~~~ia~sa~~~a~~l~a~aI 352 (454)
T PTZ00300 287 GETAKGKYPNEVVQYMARICLEAQSAVNEYVFFNSIKKLQPIPMSAEEAVCSSAVNSVYETKAKAL 352 (454)
T ss_pred chhcCCCCHHHHHHHHHHHHHHHHhhhchhhhhhhhhccccCCCChHHHHHHHHHHHHHhCCCCEE
Confidence 45555667888888877776532210 0000 0011 12455566667777888754
No 320
>TIGR00126 deoC deoxyribose-phosphate aldolase. Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria.
Probab=91.40 E-value=8.4 Score=36.00 Aligned_cols=93 Identities=19% Similarity=0.161 Sum_probs=59.1
Q ss_pred eeeecCCCCCCCCHHHHHHHHHHHHHCCcCEEEEcCCCCCCc---HHHHHHHHHHHHHhCCCce----EEEEeCCCCCcH
Q 018252 263 SCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGVGT---PGTVVPMLEAVMAVVPVEK----LAVHLHDTYGQS 335 (359)
Q Consensus 263 s~~fg~~~~~r~~~e~l~~~a~~l~~~Gad~I~L~DT~G~~~---P~~v~~lv~~l~~~~p~~~----L~~H~HNd~GLA 335 (359)
+++.|.|.+..++...+.+ ++++.+.|||+|.+.=-.|... -..+.+-++++++...+.+ ++...=++.-+.
T Consensus 57 ~tVigFP~G~~~~~~K~~E-~~~Av~~GAdEiDvv~n~g~l~~g~~~~v~~ei~~i~~~~~g~~lKvIlE~~~L~~~ei~ 135 (211)
T TIGR00126 57 CTVVGFPLGASTTDVKLYE-TKEAIKYGADEVDMVINIGALKDGNEEVVYDDIRAVVEACAGVLLKVIIETGLLTDEEIR 135 (211)
T ss_pred EEEeCCCCCCCcHHHHHHH-HHHHHHcCCCEEEeecchHhhhCCcHHHHHHHHHHHHHHcCCCeEEEEEecCCCCHHHHH
Confidence 4456778765444445444 4668889999999888889644 4566666666776543332 232221222233
Q ss_pred HHHHHHHHHcCCCEEeceeeec
Q 018252 336 LPNILISLQVSPMHAKPCFTFA 357 (359)
Q Consensus 336 lANalaAv~AGa~~ID~tl~~~ 357 (359)
--+..|+++|||+|-++--|+
T Consensus 136 -~a~~ia~eaGADfvKTsTGf~ 156 (211)
T TIGR00126 136 -KACEICIDAGADFVKTSTGFG 156 (211)
T ss_pred -HHHHHHHHhCCCEEEeCCCCC
Confidence 456779999999999986553
No 321
>TIGR01334 modD putative molybdenum utilization protein ModD. The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). The function unknown.
Probab=91.36 E-value=9.8 Score=37.09 Aligned_cols=139 Identities=12% Similarity=-0.017 Sum_probs=84.8
Q ss_pred CCCeEEEEe---CChHhH-HHHHHcCCCEEEEecCCchHHHHhhhcCCHHHHHHHHHHHHHHHHhC--CCcEEEEEeeee
Q 018252 193 EGARLPVLT---PNLKGF-EAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVL--SIPVRGYVSCVV 266 (359)
Q Consensus 193 ~~~~l~~l~---~n~~gi-e~a~~aGv~~V~i~~s~S~~~~~~n~~~t~~e~l~~i~~~i~~Ak~~--G~~V~~~is~~f 266 (359)
+++++...- |..+-+ +.|+.+|-...|-+--...+..+.|+-. .....+.+.++++.+|+. +.++. |. .
T Consensus 121 ~~~~I~~TRKT~Pg~R~l~k~Av~~GGg~~HR~gLsd~ilikdnHi~-~~g~~~~i~~av~~~r~~~~~~kIe--VE--v 195 (277)
T TIGR01334 121 PMAVVACTRKAIPLTRPLAVKAVLAAGGVIHRIGLSETLLVFANHRT-FLNDNFDWGGAIGRLKQTAPERKIT--VE--A 195 (277)
T ss_pred CCCEEEecCCCCCChhHHHHHHHHhCCCcCeecCCchhheehHHHHH-HhCCcccHHHHHHHHHHhCCCCCEE--EE--C
Confidence 556665532 233443 4677777655554432233344444210 000012455666666665 33332 22 1
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHCCcCEEEEcCCCCCCcHHHHHHHHHHHHHhCCCceEEEEeCCCCCcHHHHHHHHHHcC
Q 018252 267 GCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQVS 346 (359)
Q Consensus 267 g~~~~~r~~~e~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~lv~~l~~~~p~~~L~~H~HNd~GLAlANalaAv~AG 346 (359)
.+. +-++++.++|+|.|-|- -++|+++.+.++.++...|.+.+++=+ |.-..|+.+=...|
T Consensus 196 -------~tl----eea~ea~~~GaDiI~lD----n~~~e~l~~~v~~l~~~~~~~~leasG----GI~~~ni~~ya~~G 256 (277)
T TIGR01334 196 -------DTI----EQALTVLQASPDILQLD----KFTPQQLHHLHERLKFFDHIPTLAAAG----GINPENIADYIEAG 256 (277)
T ss_pred -------CCH----HHHHHHHHcCcCEEEEC----CCCHHHHHHHHHHHhccCCCEEEEEEC----CCCHHHHHHHHhcC
Confidence 133 34555678999988865 589999999999887666777777754 67788999999999
Q ss_pred CCEEeceee
Q 018252 347 PMHAKPCFT 355 (359)
Q Consensus 347 a~~ID~tl~ 355 (359)
+|+|-++-+
T Consensus 257 vD~is~gal 265 (277)
T TIGR01334 257 IDLFITSAP 265 (277)
T ss_pred CCEEEeCcc
Confidence 999877654
No 322
>PRK05265 pyridoxine 5'-phosphate synthase; Provisional
Probab=91.36 E-value=0.77 Score=43.72 Aligned_cols=117 Identities=20% Similarity=0.262 Sum_probs=74.9
Q ss_pred HHHHHHhhh--cCCCeEEEEe-CChHhHHHHHHcCCCEEEEecCCchHHHHhhhcCCHHHHHHHHHHHHHHHHhCCCcEE
Q 018252 183 RDVMEAVRD--LEGARLPVLT-PNLKGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVR 259 (359)
Q Consensus 183 ~ev~~~l~~--~~~~~l~~l~-~n~~gie~a~~aGv~~V~i~~s~S~~~~~~n~~~t~~e~l~~i~~~i~~Ak~~G~~V~ 259 (359)
+.+...++. ..+++++.++ |+.++++.|.+.|++.|-+++. .|... ++...++.++++..+.++|+++|+.|.
T Consensus 113 ~~l~~~i~~L~~~gIrVSLFidP~~~qi~~A~~~GAd~VELhTG---~yA~a-~~~~~~~el~~~~~aa~~a~~lGL~Vn 188 (239)
T PRK05265 113 DKLKPAIARLKDAGIRVSLFIDPDPEQIEAAAEVGADRIELHTG---PYADA-KTEAEAAELERIAKAAKLAASLGLGVN 188 (239)
T ss_pred HHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHhCcCEEEEech---hhhcC-CCcchHHHHHHHHHHHHHHHHcCCEEe
Confidence 334444443 3578888887 5789999999999999999764 22221 122335569999999999999999883
Q ss_pred EEEeeeecCCCCCCCCHHHHHHHHHHHHHCCcCEEEE-----cCCCCCCcHHHHHHHHHHHH
Q 018252 260 GYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISL-----GDTIGVGTPGTVVPMLEAVM 316 (359)
Q Consensus 260 ~~is~~fg~~~~~r~~~e~l~~~a~~l~~~Gad~I~L-----~DT~G~~~P~~v~~lv~~l~ 316 (359)
+ +.-.+.+.+..+++ + -+..++++ ++.+=++.+..|.++.+.+.
T Consensus 189 A----------GHgLny~Nv~~i~~-i--p~i~EvnIGHsiia~Al~~Gl~~aV~~m~~~i~ 237 (239)
T PRK05265 189 A----------GHGLNYHNVKPIAA-I--PGIEELNIGHAIIARALFVGLEEAVREMKRLMD 237 (239)
T ss_pred c----------CCCCCHHhHHHHhh-C--CCCeEEccCHHHHHHHHHHhHHHHHHHHHHHHh
Confidence 1 12356666665422 1 24556654 45555556666666655544
No 323
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=91.35 E-value=4.5 Score=39.77 Aligned_cols=124 Identities=14% Similarity=0.078 Sum_probs=76.5
Q ss_pred CeEEEEeCCh-HhHHHHHHcCCCEEEEecCCchHHHHhhhcCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCC
Q 018252 195 ARLPVLTPNL-KGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGA 273 (359)
Q Consensus 195 ~~l~~l~~n~-~gie~a~~aGv~~V~i~~s~S~~~~~~n~~~t~~e~l~~i~~~i~~Ak~~G~~V~~~is~~fg~~~~~r 273 (359)
+.+..+.|.. +.++.+++.|++.|.+.... . .+.++..|+.|+++...+.
T Consensus 67 vn~~~~~~~~~~~~~~~~~~~v~~v~~~~g~-----------p--------~~~i~~lk~~g~~v~~~v~---------- 117 (307)
T TIGR03151 67 VNIMLLSPFVDELVDLVIEEKVPVVTTGAGN-----------P--------GKYIPRLKENGVKVIPVVA---------- 117 (307)
T ss_pred EeeecCCCCHHHHHHHHHhCCCCEEEEcCCC-----------c--------HHHHHHHHHcCCEEEEEcC----------
Confidence 4554555655 45677889999887663211 1 1456777888988743221
Q ss_pred CCHHHHHHHHHHHHHCCcCEEEE--cCCCCCCcHHHHHHHHHHHHHhCCCceEEEEeCCCCCcHHHHHHHHHHcCCCEEe
Q 018252 274 IPPSKVAYVAKELHDMGCFEISL--GDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQVSPMHAK 351 (359)
Q Consensus 274 ~~~e~l~~~a~~l~~~Gad~I~L--~DT~G~~~P~~v~~lv~~l~~~~p~~~L~~H~HNd~GLAlANalaAv~AGa~~ID 351 (359)
+. +.++.+.++|+|.|.+ .+.-|...+.....++..+++.++ ++|-.-+.=..+-. +.+|+..||+-|-
T Consensus 118 -s~----~~a~~a~~~GaD~Ivv~g~eagGh~g~~~~~~ll~~v~~~~~-iPviaaGGI~~~~~---~~~al~~GA~gV~ 188 (307)
T TIGR03151 118 -SV----ALAKRMEKAGADAVIAEGMESGGHIGELTTMALVPQVVDAVS-IPVIAAGGIADGRG---MAAAFALGAEAVQ 188 (307)
T ss_pred -CH----HHHHHHHHcCCCEEEEECcccCCCCCCCcHHHHHHHHHHHhC-CCEEEECCCCCHHH---HHHHHHcCCCEee
Confidence 22 4568888999999876 233344333334677888888765 56666554444333 4466668999886
Q ss_pred ceeee
Q 018252 352 PCFTF 356 (359)
Q Consensus 352 ~tl~~ 356 (359)
..-.|
T Consensus 189 iGt~f 193 (307)
T TIGR03151 189 MGTRF 193 (307)
T ss_pred cchHH
Confidence 65444
No 324
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=91.33 E-value=5.9 Score=38.56 Aligned_cols=77 Identities=13% Similarity=0.012 Sum_probs=55.2
Q ss_pred CCHHHHHHHHHHHHHCCcCEEEE---c-CC---C--C---CCcHHHHHHHHHHHHHhCCCceEEEEeCCCCCcHHHHHHH
Q 018252 274 IPPSKVAYVAKELHDMGCFEISL---G-DT---I--G---VGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILI 341 (359)
Q Consensus 274 ~~~e~l~~~a~~l~~~Gad~I~L---~-DT---~--G---~~~P~~v~~lv~~l~~~~p~~~L~~H~HNd~GLAlANala 341 (359)
.+++.+.++++.+.+.|+|.|.| | .+ - | ...|+.+.++++++++... +||.+-..-+.---..-+.+
T Consensus 110 ~~~~~~~~~a~~~~~~gad~ielN~sCP~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~-~Pv~vKl~~~~~~~~~~a~~ 188 (299)
T cd02940 110 YNKEDWTELAKLVEEAGADALELNFSCPHGMPERGMGAAVGQDPELVEEICRWVREAVK-IPVIAKLTPNITDIREIARA 188 (299)
T ss_pred CCHHHHHHHHHHHHhcCCCEEEEECCCCCCCCCCCCchhhccCHHHHHHHHHHHHHhcC-CCeEEECCCCchhHHHHHHH
Confidence 47899999999999999986665 2 22 1 2 1469999999999998764 56777655444333344456
Q ss_pred HHHcCCCEEe
Q 018252 342 SLQVSPMHAK 351 (359)
Q Consensus 342 Av~AGa~~ID 351 (359)
+.++||+.|-
T Consensus 189 ~~~~Gadgi~ 198 (299)
T cd02940 189 AKEGGADGVS 198 (299)
T ss_pred HHHcCCCEEE
Confidence 7889999875
No 325
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=91.32 E-value=7.8 Score=33.49 Aligned_cols=101 Identities=15% Similarity=0.175 Sum_probs=58.9
Q ss_pred HHHHHHHHHhCCCCEEEEeccCCCCCcCCCCCHHHHHHHhhhcCCCeEEEEeCChHhHHHHHHcCCCEEEEecCCchHHH
Q 018252 150 KVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPVLTPNLKGFEAAIAAGAKEVAIFASASEAFS 229 (359)
Q Consensus 150 k~~ia~~L~~aGv~~IEvG~fvspk~vPq~~D~~ev~~~l~~~~~~~l~~l~~n~~gie~a~~aGv~~V~i~~s~S~~~~ 229 (359)
|.-++..|.+.|+++|..|..++| +++ ++.|.+.+++-|.+..-
T Consensus 16 kniv~~~L~~~GfeVidLG~~v~~---------e~~---------------------v~aa~~~~adiVglS~L------ 59 (128)
T cd02072 16 NKILDHAFTEAGFNVVNLGVLSPQ---------EEF---------------------IDAAIETDADAILVSSL------ 59 (128)
T ss_pred HHHHHHHHHHCCCEEEECCCCCCH---------HHH---------------------HHHHHHcCCCEEEEecc------
Confidence 456677888999999999986654 344 34455555565555321
Q ss_pred HhhhcCCHHHHHHHHHHHHHHHHhCCC-cEEEEEeeeecCCCCCCCCHHHHHHHHHHHHHCCcCEEEEcCC
Q 018252 230 KSNINCSIEDSLVRYRAVAHAAKVLSI-PVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDT 299 (359)
Q Consensus 230 ~~n~~~t~~e~l~~i~~~i~~Ak~~G~-~V~~~is~~fg~~~~~r~~~e~l~~~a~~l~~~Gad~I~L~DT 299 (359)
++.+ +..++++++..++.|+ .+.. ..|.. -..+++...+..+++.++|++.+.=+.|
T Consensus 60 ---~t~~----~~~~~~~~~~l~~~gl~~v~v----ivGG~--~~i~~~d~~~~~~~L~~~Gv~~vf~pgt 117 (128)
T cd02072 60 ---YGHG----EIDCKGLREKCDEAGLKDILL----YVGGN--LVVGKQDFEDVEKRFKEMGFDRVFAPGT 117 (128)
T ss_pred ---ccCC----HHHHHHHHHHHHHCCCCCCeE----EEECC--CCCChhhhHHHHHHHHHcCCCEEECcCC
Confidence 1111 2234455566666776 3221 12321 0135566666777788888888876655
No 326
>PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional
Probab=91.32 E-value=0.63 Score=43.74 Aligned_cols=73 Identities=18% Similarity=0.116 Sum_probs=55.6
Q ss_pred CCHHHHHHHHHHHHHCCcCE--EEEcCCCCCCcHHHH--HHHHHHHHHhCCCceEEEEeC-CCCCcHHHHHHHHHHcCCC
Q 018252 274 IPPSKVAYVAKELHDMGCFE--ISLGDTIGVGTPGTV--VPMLEAVMAVVPVEKLAVHLH-DTYGQSLPNILISLQVSPM 348 (359)
Q Consensus 274 ~~~e~l~~~a~~l~~~Gad~--I~L~DT~G~~~P~~v--~~lv~~l~~~~p~~~L~~H~H-Nd~GLAlANalaAv~AGa~ 348 (359)
.++..+.+-++++.+.|++. +-+.| |...|.-. .+.++++++..|.+++.+|.| +|.... .....++||+
T Consensus 16 ~d~~~l~~~~~~l~~~~~~~~H~DimD--g~fvpn~~~G~~~v~~lr~~~~~~~lDvHLm~~~p~~~---i~~~~~~Gad 90 (228)
T PTZ00170 16 ADFSKLADEAQDVLSGGADWLHVDVMD--GHFVPNLSFGPPVVKSLRKHLPNTFLDCHLMVSNPEKW---VDDFAKAGAS 90 (228)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEEeccc--CccCCCcCcCHHHHHHHHhcCCCCCEEEEECCCCHHHH---HHHHHHcCCC
Confidence 47788999999999999984 66777 88877733 267888888887889999999 443332 2567788999
Q ss_pred EEe
Q 018252 349 HAK 351 (359)
Q Consensus 349 ~ID 351 (359)
+|-
T Consensus 91 ~it 93 (228)
T PTZ00170 91 QFT 93 (228)
T ss_pred EEE
Confidence 873
No 327
>PLN02925 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase
Probab=91.31 E-value=12 Score=41.06 Aligned_cols=165 Identities=13% Similarity=0.085 Sum_probs=91.6
Q ss_pred CCCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcCCCCCHHHHHHHhhhc--CC--CeEEEEeC-ChHhHHHHHHcCCCEE
Q 018252 144 TVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDL--EG--ARLPVLTP-NLKGFEAAIAAGAKEV 218 (359)
Q Consensus 144 ~~~~~~k~~ia~~L~~aGv~~IEvG~fvspk~vPq~~D~~ev~~~l~~~--~~--~~l~~l~~-n~~gie~a~~aGv~~V 218 (359)
...++.-++-+..|.++|.+.|-+..+ ...+++.+...-+.+ .+ +.+++=+- +.+-...|++. ++.|
T Consensus 106 T~D~eatv~Qi~~l~~aGceiVRvtv~-------~~~~A~al~~I~~~L~~~g~~iPLVADIHF~~~~Al~a~~~-vdki 177 (733)
T PLN02925 106 TKDVEATVDQVMRIADKGADIVRITVQ-------GKKEADACFEIKNTLVQKGYNIPLVADIHFAPSVALRVAEC-FDKI 177 (733)
T ss_pred cccHHHHHHHHHHHHHcCCCEEEEcCC-------CHHHHHhHHHHHHHHhhcCCCCCEEEecCCCHHHHHHHHHh-cCCe
Confidence 466778888899999999999999863 334554433322221 23 33333332 44434445555 7777
Q ss_pred EEecC----CchHHHHhh-----hcCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCC---CC--CCHHHH----H
Q 018252 219 AIFAS----ASEAFSKSN-----INCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVE---GA--IPPSKV----A 280 (359)
Q Consensus 219 ~i~~s----~S~~~~~~n-----~~~t~~e~l~~i~~~i~~Ak~~G~~V~~~is~~fg~~~~---~r--~~~e~l----~ 280 (359)
++--. ....|.... +..-.+...+++.++++.||++|..+|.-+- .|.-.. .+ .+|+-+ .
T Consensus 178 RINPGN~~~~~k~F~~~eYtdeeY~~Ele~i~e~f~~~v~~ak~~~~~iRIGvN--~GSLs~ri~~~yGdtp~gmVeSAl 255 (733)
T PLN02925 178 RVNPGNFADRRAQFEKLEYTEDDYQKELEHIEEVFTPLVEKCKKYGRAMRIGTN--HGSLSDRIMSYYGDSPRGMVESAF 255 (733)
T ss_pred EECCcccCCccccccccccchhhhhhhHHHHHHHHHHHHHHHHHCCCCEEEecC--CcCchHHHHHHhCCChHHHHHHHH
Confidence 77211 100111100 1111233335556699999999999986553 222110 01 245543 3
Q ss_pred HHHHHHHHCCcC--EEEEcCCCCCCcHHHHHHHHHHHHHh
Q 018252 281 YVAKELHDMGCF--EISLGDTIGVGTPGTVVPMLEAVMAV 318 (359)
Q Consensus 281 ~~a~~l~~~Gad--~I~L~DT~G~~~P~~v~~lv~~l~~~ 318 (359)
+.++.+.+.|-+ .|+++.+.=...-..++.++..+.+.
T Consensus 256 e~~~i~e~~~f~diviS~KsSn~~~~V~AyR~La~~L~~~ 295 (733)
T PLN02925 256 EFARICRKLDYHNFVFSMKASNPVVMVQAYRLLVAEMYVL 295 (733)
T ss_pred HHHHHHHHCCCCcEEEEEEcCChHHHHHHHHHHHHHHHhc
Confidence 455566677876 57777776555556666666766654
No 328
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=91.28 E-value=5.6 Score=38.37 Aligned_cols=98 Identities=16% Similarity=0.149 Sum_probs=46.7
Q ss_pred HHHHHHcCCCEEEEecCCchHHHHhhhcCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHH
Q 018252 207 FEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKEL 286 (359)
Q Consensus 207 ie~a~~aGv~~V~i~~s~S~~~~~~n~~~t~~e~l~~i~~~i~~Ak~~G~~V~~~is~~fg~~~~~r~~~e~l~~~a~~l 286 (359)
++..++.|++.+-+.-++.|.+ -.|.+|-.+-++.+++.++. .+++.+.+ +..+.++.++.++.+
T Consensus 28 i~~l~~~Gv~gi~~~Gs~GE~~-----~ls~~Er~~~~~~~~~~~~~-~~~vi~gv---------~~~~~~~~i~~a~~a 92 (292)
T PRK03170 28 VDYLIANGTDGLVVVGTTGESP-----TLTHEEHEELIRAVVEAVNG-RVPVIAGT---------GSNSTAEAIELTKFA 92 (292)
T ss_pred HHHHHHcCCCEEEECCcCCccc-----cCCHHHHHHHHHHHHHHhCC-CCcEEeec---------CCchHHHHHHHHHHH
Confidence 3444555666666555555543 23444444444444444321 13332211 122445566666666
Q ss_pred HHCCcCEEEE-cCCCCCCcHHHHHHHHHHHHHhC
Q 018252 287 HDMGCFEISL-GDTIGVGTPGTVVPMLEAVMAVV 319 (359)
Q Consensus 287 ~~~Gad~I~L-~DT~G~~~P~~v~~lv~~l~~~~ 319 (359)
.++|+|.|.+ +=.....+++++.+.++.+.+..
T Consensus 93 ~~~G~d~v~~~pP~~~~~~~~~i~~~~~~ia~~~ 126 (292)
T PRK03170 93 EKAGADGALVVTPYYNKPTQEGLYQHFKAIAEAT 126 (292)
T ss_pred HHcCCCEEEECCCcCCCCCHHHHHHHHHHHHhcC
Confidence 6666665444 22223334555666666555544
No 329
>cd00003 PNPsynthase Pyridoxine 5'-phosphate (PNP) synthase domain; pyridoxal 5'-phosphate is the active form of vitamin B6 that acts as an essential, ubiquitous coenzyme in amino acid metabolism. In bacteria, formation of pyridoxine 5'-phosphate is a step in the biosynthesis of vitamin B6. PNP synthase, a homooctameric enzyme, catalyzes the final step in PNP biosynthesis, the condensation of 1-amino-acetone 3-phosphate and 1-deoxy-D-xylulose 5-phosphate. PNP synthase adopts a TIM barrel topology, intersubunit contacts are mediated by three ''extra'' helices, generating a tetramer of symmetric dimers with shared active sites; the open state has been proposed to accept substrates and to release products, while most of the catalytic events are likely to occur in the closed state; a hydrophilic channel running through the center of the barrel was identified as the essential structural feature that enables PNP synthase to release water molecules produced during the reaction from the closed,
Probab=91.24 E-value=1.4 Score=41.91 Aligned_cols=99 Identities=22% Similarity=0.338 Sum_probs=65.6
Q ss_pred HHHHHHhhh--cCCCeEEEEe-CChHhHHHHHHcCCCEEEEecCCchHHHHhhhcCCHHHHHHHHHHHHHHHHhCCCcEE
Q 018252 183 RDVMEAVRD--LEGARLPVLT-PNLKGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVR 259 (359)
Q Consensus 183 ~ev~~~l~~--~~~~~l~~l~-~n~~gie~a~~aGv~~V~i~~s~S~~~~~~n~~~t~~e~l~~i~~~i~~Ak~~G~~V~ 259 (359)
+.+...+++ ..+++++.++ |+.++++.|.+.|++.|-+++. .|....-....++.++++..++++|+++|+.|.
T Consensus 110 ~~l~~~i~~l~~~gI~VSLFiDPd~~qi~~A~~~GAd~VELhTG---~Ya~a~~~~~~~~el~~i~~aa~~a~~~GL~Vn 186 (234)
T cd00003 110 EKLKPIIERLKDAGIRVSLFIDPDPEQIEAAKEVGADRVELHTG---PYANAYDKAEREAELERIAKAAKLARELGLGVN 186 (234)
T ss_pred HHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHhCcCEEEEech---hhhcCCCchhHHHHHHHHHHHHHHHHHcCCEEe
Confidence 334444443 3567887777 5778999999999999999764 222211112235569999999999999999883
Q ss_pred EEEeeeecCCCCCCCCHHHHHHHHHHHHHCCcCEEEEc
Q 018252 260 GYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLG 297 (359)
Q Consensus 260 ~~is~~fg~~~~~r~~~e~l~~~a~~l~~~Gad~I~L~ 297 (359)
+ +.-.+.+.+..+++ + -+..++++.
T Consensus 187 A----------GHgLny~Nv~~i~~-i--p~i~ElnIG 211 (234)
T cd00003 187 A----------GHGLNYENVKPIAK-I--PGIAELNIG 211 (234)
T ss_pred c----------CCCCCHHHHHHHHh-C--CCCeEEccC
Confidence 1 12456667766665 2 246666653
No 330
>PF13714 PEP_mutase: Phosphoenolpyruvate phosphomutase; PDB: 1ZLP_A 3EOO_C 1UJQ_D 1O5Q_A 2DUA_A 2HJP_A 2HRW_A 2QIW_A 3KZ2_B 3IH1_B ....
Probab=91.23 E-value=1.8 Score=41.14 Aligned_cols=135 Identities=20% Similarity=0.225 Sum_probs=80.1
Q ss_pred HHHHHHcCCCEEEEe-cCCchHHHHhhhc-CCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHH
Q 018252 207 FEAAIAAGAKEVAIF-ASASEAFSKSNIN-CSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAK 284 (359)
Q Consensus 207 ie~a~~aGv~~V~i~-~s~S~~~~~~n~~-~t~~e~l~~i~~~i~~Ak~~G~~V~~~is~~fg~~~~~r~~~e~l~~~a~ 284 (359)
.+.+-.+|.+-+.+. ...+-.+-.--.+ .|.+|.++.++.+.+.. .++|.+.+-.-|| -++..+.+.++
T Consensus 22 Ar~~e~~Gf~ai~~sg~~~a~s~G~pD~~~lt~~e~~~~~~~I~~~~---~iPv~vD~d~GyG------~~~~~v~~tv~ 92 (238)
T PF13714_consen 22 ARLAERAGFDAIATSGAGVAASLGYPDGGLLTLTEMLAAVRRIARAV---SIPVIVDADTGYG------NDPENVARTVR 92 (238)
T ss_dssp HHHHHHTT-SEEEEHHHHHHHHTTS-SSS-S-HHHHHHHHHHHHHHS---SSEEEEE-TTTSS------SSHHHHHHHHH
T ss_pred HHHHHHcCCCEEEechHHHHHHcCCCCCCCCCHHHHHHHHHHHHhhh---cCcEEEEcccccC------chhHHHHHHHH
Confidence 334444687776653 1111111111112 46788888777777654 5777554432222 25899999999
Q ss_pred HHHHCCcCEEEEcCC-CC-----CCcHHHHHHHHHHHHHhC--CCceEEEEeCC------CCCcHHHHHHHHHHcCCCEE
Q 018252 285 ELHDMGCFEISLGDT-IG-----VGTPGTVVPMLEAVMAVV--PVEKLAVHLHD------TYGQSLPNILISLQVSPMHA 350 (359)
Q Consensus 285 ~l~~~Gad~I~L~DT-~G-----~~~P~~v~~lv~~l~~~~--p~~~L~~H~HN------d~GLAlANalaAv~AGa~~I 350 (359)
++.++|+--|.|-|. .| ...++++.+-|++.++.. ++.-|-.-+=- .+--++.-+.+-.+||||.|
T Consensus 93 ~~~~aG~agi~IEDq~~~~~~~~l~~~ee~~~kI~Aa~~a~~~~~~~I~ARTDa~~~~~~~~deaI~R~~aY~eAGAD~i 172 (238)
T PF13714_consen 93 ELERAGAAGINIEDQRCGHGGKQLVSPEEMVAKIRAAVDARRDPDFVIIARTDAFLRAEEGLDEAIERAKAYAEAGADMI 172 (238)
T ss_dssp HHHHCT-SEEEEESBSTTTSTT-B--HHHHHHHHHHHHHHHSSTTSEEEEEECHHCHHHHHHHHHHHHHHHHHHTT-SEE
T ss_pred HHHHcCCcEEEeeccccCCCCCceeCHHHHHHHHHHHHHhccCCeEEEEEeccccccCCCCHHHHHHHHHHHHHcCCCEE
Confidence 999999999999999 44 446788888888888754 33222222211 22345667888899999976
No 331
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=91.23 E-value=13 Score=34.77 Aligned_cols=183 Identities=19% Similarity=0.082 Sum_probs=94.7
Q ss_pred HHHHHHHHHHHHhCCCCEEEEeccCCCCCcCCCCCHHHHHHHhhhcCCCeE--EEEeCChHhHHHHHHcCCCEEEEecCC
Q 018252 147 TGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARL--PVLTPNLKGFEAAIAAGAKEVAIFASA 224 (359)
Q Consensus 147 ~~~k~~ia~~L~~aGv~~IEvG~fvspk~vPq~~D~~ev~~~l~~~~~~~l--~~l~~n~~gie~a~~aGv~~V~i~~s~ 224 (359)
..+-.++++.|.+.|++.|=+-........+ -.+.+ +.+.+++..++.+ .+-+++.++++..+..|++.|.+-.
T Consensus 26 ~~d~~~~a~~~~~~G~~~i~i~d~~~~~~~~-~~~~~-~i~~i~~~~~~pv~~~GGI~s~~d~~~~l~~G~~~v~ig~-- 101 (243)
T cd04731 26 AGDPVELAKRYNEQGADELVFLDITASSEGR-ETMLD-VVERVAEEVFIPLTVGGGIRSLEDARRLLRAGADKVSINS-- 101 (243)
T ss_pred CCCHHHHHHHHHHCCCCEEEEEcCCcccccC-cccHH-HHHHHHHhCCCCEEEeCCCCCHHHHHHHHHcCCceEEECc--
Confidence 3477889999999999966554321110000 01333 3343443333333 3334677899999999988876532
Q ss_pred chHHHHhhhcCCHHHHHHHHHHHHHHHHhCCC-cEEEEEeeeecC-------CCCC-CCCHHHHHHHHHHHHHCCcCEEE
Q 018252 225 SEAFSKSNINCSIEDSLVRYRAVAHAAKVLSI-PVRGYVSCVVGC-------PVEG-AIPPSKVAYVAKELHDMGCFEIS 295 (359)
Q Consensus 225 S~~~~~~n~~~t~~e~l~~i~~~i~~Ak~~G~-~V~~~is~~fg~-------~~~~-r~~~e~l~~~a~~l~~~Gad~I~ 295 (359)
..+. ..+.+.++++. .+. .+.+.|..--+. .... ..+.....++++.+.+.|++.|.
T Consensus 102 -~~~~----------~p~~~~~i~~~---~~~~~i~~~ld~k~~~~~~~~v~~~~~~~~~~~~~~~~~~~l~~~G~d~i~ 167 (243)
T cd04731 102 -AAVE----------NPELIREIAKR---FGSQCVVVSIDAKRRGDGGYEVYTHGGRKPTGLDAVEWAKEVEELGAGEIL 167 (243)
T ss_pred -hhhh----------ChHHHHHHHHH---cCCCCEEEEEEeeecCCCceEEEEcCCceecCCCHHHHHHHHHHCCCCEEE
Confidence 1211 11223333332 222 232222210000 0000 11234567888999999999888
Q ss_pred E--cCCCCCCcHHHHHHHHHHHHHhCCCceEEEEeCCCCCcHHHHHHHHHHc-CCCEEec
Q 018252 296 L--GDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQV-SPMHAKP 352 (359)
Q Consensus 296 L--~DT~G~~~P~~v~~lv~~l~~~~p~~~L~~H~HNd~GLAlANalaAv~A-Ga~~ID~ 352 (359)
+ -+..|..... -.++++.+++..+ +|+-.-+--. ....+..+++. ||+.|=+
T Consensus 168 v~~i~~~g~~~g~-~~~~i~~i~~~~~-~pvia~GGi~---~~~di~~~l~~~g~dgv~v 222 (243)
T cd04731 168 LTSMDRDGTKKGY-DLELIRAVSSAVN-IPVIASGGAG---KPEHFVEAFEEGGADAALA 222 (243)
T ss_pred EeccCCCCCCCCC-CHHHHHHHHhhCC-CCEEEeCCCC---CHHHHHHHHHhCCCCEEEE
Confidence 8 4454544332 3466777776654 4666554222 23445555665 8876644
No 332
>PRK04165 acetyl-CoA decarbonylase/synthase complex subunit gamma; Provisional
Probab=91.21 E-value=14 Score=38.57 Aligned_cols=119 Identities=17% Similarity=0.236 Sum_probs=82.5
Q ss_pred CCHHHHHHHHHHH-----HhCC----CCEEEEeccCCCCCcCCCCCHHHHHHHhh---hcCCCeEEEEeCChHhHHHHHH
Q 018252 145 VPTGVKVELIRRL-----VSSG----LPVVEATSFVSPKWVPQLADARDVMEAVR---DLEGARLPVLTPNLKGFEAAIA 212 (359)
Q Consensus 145 ~~~~~k~~ia~~L-----~~aG----v~~IEvG~fvspk~vPq~~D~~ev~~~l~---~~~~~~l~~l~~n~~gie~a~~ 212 (359)
++.+.-.+.++.+ .+.| .|.|-+|+.. .|.+.+...++ +..+..++.-+.+.+-++++++
T Consensus 102 l~~e~i~~r~~~~~~~~~~rvG~~~~AD~IaL~~~s--------~dp~~v~~~Vk~V~~~~dvPLSIDT~dpevleaAle 173 (450)
T PRK04165 102 MDDEEIDARLKKINNFQFERVGEILKLDMVALRNAS--------GDPEKFAKAVKKVAETTDLPLILCSEDPAVLKAALE 173 (450)
T ss_pred CChHHHHHHHHHhhcchHhhhcccccCCEEEEeCCC--------CCHHHHHHHHHHHHHhcCCCEEEeCCCHHHHHHHHH
Confidence 5666666666666 5666 9999999832 14444444444 3346777777788899999999
Q ss_pred cCCCEEEEecCCchHHHHhhhcCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHHCCcC
Q 018252 213 AGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCF 292 (359)
Q Consensus 213 aGv~~V~i~~s~S~~~~~~n~~~t~~e~l~~i~~~i~~Ak~~G~~V~~~is~~fg~~~~~r~~~e~l~~~a~~l~~~Gad 292 (359)
+|.+...+..+++. +++..+++.|+++|..+.+ + .+ +.+++.++.+.+.++|..
T Consensus 174 agad~~plI~Sat~---------------dN~~~m~~la~~yg~pvVv--~----~~-----dl~~L~~lv~~~~~~GI~ 227 (450)
T PRK04165 174 VVADRKPLLYAATK---------------ENYEEMAELAKEYNCPLVV--K----AP-----NLEELKELVEKLQAAGIK 227 (450)
T ss_pred hcCCCCceEEecCc---------------chHHHHHHHHHHcCCcEEE--E----ch-----hHHHHHHHHHHHHHcCCC
Confidence 99887766655432 2345667778888887732 1 11 278899999999999997
Q ss_pred EEEEc
Q 018252 293 EISLG 297 (359)
Q Consensus 293 ~I~L~ 297 (359)
.|.|=
T Consensus 228 dIILD 232 (450)
T PRK04165 228 DLVLD 232 (450)
T ss_pred cEEEC
Confidence 77763
No 333
>cd06556 ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme superfamily catalyze the formation and cleavage of either P-C or C-C bonds. Typical members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), 2-methylisocitrate lyase (MICL), and ketopantoate hydroxymethyltransferase (KPHMT).
Probab=91.15 E-value=4 Score=38.87 Aligned_cols=128 Identities=16% Similarity=0.115 Sum_probs=77.7
Q ss_pred HHHHHHcCCCEEEEecCCchHH-HHhhh-cCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHH
Q 018252 207 FEAAIAAGAKEVAIFASASEAF-SKSNI-NCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAK 284 (359)
Q Consensus 207 ie~a~~aGv~~V~i~~s~S~~~-~~~n~-~~t~~e~l~~i~~~i~~Ak~~G~~V~~~is~~fg~~~~~r~~~e~l~~~a~ 284 (359)
...+-++|++-|.+.-+..-.. -.... ..+.++.+..++.+.+.+. ...+.+. .|+++--+++.+.+.++
T Consensus 25 A~i~e~aG~dai~v~~s~~a~~~G~pD~~~vtl~em~~~~~~I~r~~~--~~pviaD------~~~G~g~~~~~~~~~~~ 96 (240)
T cd06556 25 AKQFADAGLNVMLVGDSQGMTVAGYDDTLPYPVNDVPYHVRAVRRGAP--LALIVAD------LPFGAYGAPTAAFELAK 96 (240)
T ss_pred HHHHHHcCCCEEEEChHHHHHhcCCCCCCCcCHHHHHHHHHHHHhhCC--CCCEEEe------CCCCCCcCHHHHHHHHH
Confidence 3444456888877743211110 01111 2467777777666665442 1345333 33433337789999999
Q ss_pred HHHHCCcCEEEEcCCCCCCcHHHHHHHHHHHHHhCCCceEEEEeC------CCCC-------------cHHHHHHHHHHc
Q 018252 285 ELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLH------DTYG-------------QSLPNILISLQV 345 (359)
Q Consensus 285 ~l~~~Gad~I~L~DT~G~~~P~~v~~lv~~l~~~~p~~~L~~H~H------Nd~G-------------LAlANalaAv~A 345 (359)
++.++|++.|.|-|.. ++.+.++++++.. +.|-.|+= ++.| -++.-+.+-.+|
T Consensus 97 ~l~~aGa~gv~iED~~------~~~~~i~ai~~a~--i~ViaRtd~~pq~~~~~gg~~~~~~~~~~~~~ai~Ra~ay~~A 168 (240)
T cd06556 97 TFMRAGAAGVKIEGGE------WHIETLQMLTAAA--VPVIAHTGLTPQSVNTSGGDEGQYRGDEAGEQLIADALAYAPA 168 (240)
T ss_pred HHHHcCCcEEEEcCcH------HHHHHHHHHHHcC--CeEEEEeCCchhhhhccCCceeeccCHHHHHHHHHHHHHHHHc
Confidence 9999999999999963 4556677777652 44555542 2222 346677888899
Q ss_pred CCCEE
Q 018252 346 SPMHA 350 (359)
Q Consensus 346 Ga~~I 350 (359)
||+.|
T Consensus 169 GAd~i 173 (240)
T cd06556 169 GADLI 173 (240)
T ss_pred CCCEE
Confidence 99976
No 334
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=91.05 E-value=13 Score=34.48 Aligned_cols=185 Identities=14% Similarity=0.063 Sum_probs=97.3
Q ss_pred HHHHHHHHHHHhCCCCEEEEeccCCCCCcCCCCCHHHHHHHhhhcCCCe--EEEEeCChHhHHHHHHcCCCEEEEecCCc
Q 018252 148 GVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGAR--LPVLTPNLKGFEAAIAAGAKEVAIFASAS 225 (359)
Q Consensus 148 ~~k~~ia~~L~~aGv~~IEvG~fvspk~vPq~~D~~ev~~~l~~~~~~~--l~~l~~n~~gie~a~~aGv~~V~i~~s~S 225 (359)
.+-+++++.+.+.|++.|=+.-...-.. ..-.+. ++++.+.+..+.. +-+=+++.++++.+++.|++.|.+- +
T Consensus 30 ~dp~~~a~~~~~~g~~~i~i~dl~~~~~-~~~~n~-~~~~~i~~~~~~pv~~~ggi~~~~d~~~~~~~G~~~vilg---~ 104 (232)
T TIGR03572 30 GDPVNAARIYNAKGADELIVLDIDASKR-GREPLF-ELISNLAEECFMPLTVGGGIRSLEDAKKLLSLGADKVSIN---T 104 (232)
T ss_pred CCHHHHHHHHHHcCCCEEEEEeCCCccc-CCCCCH-HHHHHHHHhCCCCEEEECCCCCHHHHHHHHHcCCCEEEEC---h
Confidence 3778899999999999776653221110 000232 3334443322333 2333457789999999999987552 1
Q ss_pred hHHHHhhhcCCHHHHHHHHHHHHHHHHhCCCc-EEEEEeee----------ecCCCCCCCCHHHHHHHHHHHHHCCcCEE
Q 018252 226 EAFSKSNINCSIEDSLVRYRAVAHAAKVLSIP-VRGYVSCV----------VGCPVEGAIPPSKVAYVAKELHDMGCFEI 294 (359)
Q Consensus 226 ~~~~~~n~~~t~~e~l~~i~~~i~~Ak~~G~~-V~~~is~~----------fg~~~~~r~~~e~l~~~a~~l~~~Gad~I 294 (359)
..+ +..+.++++++. .|-. +.+.+-.- +.... ...+.....++++.+.+.|++.|
T Consensus 105 ~~l----------~~~~~~~~~~~~---~~~~~i~vsld~~~~~~~~~~~v~~~~~-~~~~~~~~~~~~~~~~~~G~d~i 170 (232)
T TIGR03572 105 AAL----------ENPDLIEEAARR---FGSQCVVVSIDVKKELDGSDYKVYSDNG-RRATGRDPVEWAREAEQLGAGEI 170 (232)
T ss_pred hHh----------cCHHHHHHHHHH---cCCceEEEEEEeccCCCCCcEEEEECCC-cccCCCCHHHHHHHHHHcCCCEE
Confidence 121 112223333322 2322 22222210 00000 01122345788999999999999
Q ss_pred EEcC--CCCCCcHHHHHHHHHHHHHhCCCceEEEEeCCCCCcHHHHHHH-HHHcCCCEEeceeee
Q 018252 295 SLGD--TIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILI-SLQVSPMHAKPCFTF 356 (359)
Q Consensus 295 ~L~D--T~G~~~P~~v~~lv~~l~~~~p~~~L~~H~HNd~GLAlANala-Av~AGa~~ID~tl~~ 356 (359)
.+-| ..|.... --.++++.+++..+ +|+-.=+.-. ...-+.. ..+.||+.|=..-+|
T Consensus 171 ~i~~i~~~g~~~g-~~~~~~~~i~~~~~-ipvia~GGi~---s~~di~~~l~~~gadgV~vg~a~ 230 (232)
T TIGR03572 171 LLNSIDRDGTMKG-YDLELIKTVSDAVS-IPVIALGGAG---SLDDLVEVALEAGASAVAAASLF 230 (232)
T ss_pred EEeCCCccCCcCC-CCHHHHHHHHhhCC-CCEEEECCCC---CHHHHHHHHHHcCCCEEEEehhh
Confidence 9888 3333222 23677888887764 4555433222 2233334 455799988766554
No 335
>TIGR01574 miaB-methiolase tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB. Hits to this model span all major groups of bacteria and eukaryotes, but not archaea, which are known to lack this particular tRNA modification. The enzyme from Thermotoga maritima has been cloned, expressed, spectroscopically characterized and shown to complement the E. coli MiaB enzyme.
Probab=91.03 E-value=15 Score=37.84 Aligned_cols=145 Identities=13% Similarity=0.150 Sum_probs=84.9
Q ss_pred CCCCHHHHHHHHHHHHhCCCCEEEEec--cCCC---CCcCCCCCHHHHHHHhhhcCCC---eEEEEeCC---hHhHHHHH
Q 018252 143 NTVPTGVKVELIRRLVSSGLPVVEATS--FVSP---KWVPQLADARDVMEAVRDLEGA---RLPVLTPN---LKGFEAAI 211 (359)
Q Consensus 143 ~~~~~~~k~~ia~~L~~aGv~~IEvG~--fvsp---k~vPq~~D~~ev~~~l~~~~~~---~l~~l~~n---~~gie~a~ 211 (359)
...+.+..++-++.|.+.|++.|-+.. +... +..+...+..++++.+.+.++. ++..+-|. .+-++...
T Consensus 172 rsr~~e~I~~Ei~~l~~~g~~ei~l~~~~~~~y~g~d~~~~~~~l~~Ll~~l~~~~~~~~ir~~~~~p~~l~~ell~~l~ 251 (438)
T TIGR01574 172 ISRPFDDILQEVQKLAEKGVREITLLGQNVNAYRGKDFEGKTMDFSDLLRELSTIDGIERIRFTSSHPLDFDDDLIEVFA 251 (438)
T ss_pred cccCHHHHHHHHHHHHHcCCeEEEEEecccCCccCCCCCCCcccHHHHHHHHHhcCCceEEEEecCCcccCCHHHHHHHH
Confidence 357899999999999999999886643 1111 0000111344566666544443 22222232 24466666
Q ss_pred HcC--CCEEEEec-CCchHHHHhhhcCCHHHHHHHHHHHHHHHHhC--CCcEEEEEeeeecCCCCCCCCHHHHHHHHHHH
Q 018252 212 AAG--AKEVAIFA-SASEAFSKSNINCSIEDSLVRYRAVAHAAKVL--SIPVRGYVSCVVGCPVEGAIPPSKVAYVAKEL 286 (359)
Q Consensus 212 ~aG--v~~V~i~~-s~S~~~~~~n~~~t~~e~l~~i~~~i~~Ak~~--G~~V~~~is~~fg~~~~~r~~~e~l~~~a~~l 286 (359)
++| ...+++-+ +.|+--.+ .+|+.. ..+.+.++++.+++. |+.+..++. +|.|.+ +++.+.+.++.+
T Consensus 252 ~~g~~~~~l~iglQSgsd~vLk-~m~R~~--t~~~~~~~v~~ir~~~~~i~i~~d~I--vG~PgE---t~ed~~~tl~~i 323 (438)
T TIGR01574 252 NNPKLCKSMHLPVQSGSSEILK-LMKRGY--TREWYLNLVRKLRAACPNVSISTDII--VGFPGE---TEEDFEETLDLL 323 (438)
T ss_pred hCCCccCceeeCCCcCCHHHHH-hcCCCC--CHHHHHHHHHHHHHhCCCCeEeeCEE--EeCCCC---CHHHHHHHHHHH
Confidence 677 77888765 44554443 355421 123455666666665 666666665 777765 566777777777
Q ss_pred HHCCcCEEE
Q 018252 287 HDMGCFEIS 295 (359)
Q Consensus 287 ~~~Gad~I~ 295 (359)
.+.+.+.+.
T Consensus 324 ~~~~~~~~~ 332 (438)
T TIGR01574 324 REVEFDSAF 332 (438)
T ss_pred HhcCCCeee
Confidence 777776544
No 336
>PRK14328 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=90.98 E-value=14 Score=37.87 Aligned_cols=143 Identities=18% Similarity=0.200 Sum_probs=81.3
Q ss_pred CCCCHHHHHHHHHHHHhCCCCEEEEecc--C-CCCCcCCCCCHHHHHHHhhhcCCC-eEEEEe--CC---hHhHHHHHHc
Q 018252 143 NTVPTGVKVELIRRLVSSGLPVVEATSF--V-SPKWVPQLADARDVMEAVRDLEGA-RLPVLT--PN---LKGFEAAIAA 213 (359)
Q Consensus 143 ~~~~~~~k~~ia~~L~~aGv~~IEvG~f--v-spk~vPq~~D~~ev~~~l~~~~~~-~l~~l~--~n---~~gie~a~~a 213 (359)
...+.++.++-++.|.+.|++.|-+... . ...-.+...+..++++.+...++. ++.... |+ .+-++...++
T Consensus 174 Rsr~~e~Iv~Ei~~l~~~G~~ei~l~~~~~~~yg~d~~~~~~l~~Ll~~l~~~~~~~~ir~~~~~P~~i~~ell~~l~~~ 253 (439)
T PRK14328 174 RSRKPEDIIAEIKELVSEGYKEVTLLGQNVNSYGKDLEEKIDFADLLRRVNEIDGLERIRFMTSHPKDLSDDLIEAIADC 253 (439)
T ss_pred ccCCHHHHHHHHHHHHHCCCcEEEEeccccCcCCcCCCCCcCHHHHHHHHHhcCCCcEEEEecCChhhcCHHHHHHHHhC
Confidence 4467888888999999999999877541 1 111011112345566666555543 232222 32 2345555556
Q ss_pred C--CCEEEEec-CCchHHHHhhhcCCHHHHHHHHHHHHHHHHhC--CCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHH
Q 018252 214 G--AKEVAIFA-SASEAFSKSNINCSIEDSLVRYRAVAHAAKVL--SIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHD 288 (359)
Q Consensus 214 G--v~~V~i~~-s~S~~~~~~n~~~t~~e~l~~i~~~i~~Ak~~--G~~V~~~is~~fg~~~~~r~~~e~l~~~a~~l~~ 288 (359)
| ...+++-+ +.|+--.+ .+|+.. ..+.+.++++.+++. ++.+.++++ +|.|.+ +.+.+.+.++.+.+
T Consensus 254 ~~~~~~l~iglQSgsd~vLk-~M~R~~--~~~~~~~~i~~lr~~~~~i~i~~d~I--vG~PgE---T~ed~~~tl~~i~~ 325 (439)
T PRK14328 254 DKVCEHIHLPVQSGSNRILK-KMNRHY--TREYYLELVEKIKSNIPDVAITTDII--VGFPGE---TEEDFEETLDLVKE 325 (439)
T ss_pred CCcCceeeeCCCcCCHHHHH-hCCCCC--CHHHHHHHHHHHHHhCCCCEEEEEEE--EECCCC---CHHHHHHHHHHHHh
Confidence 4 77888864 55554443 355421 134455667777776 555666665 888876 45556666666666
Q ss_pred CCcCE
Q 018252 289 MGCFE 293 (359)
Q Consensus 289 ~Gad~ 293 (359)
++.+.
T Consensus 326 l~~~~ 330 (439)
T PRK14328 326 VRYDS 330 (439)
T ss_pred cCCCc
Confidence 66553
No 337
>PRK09058 coproporphyrinogen III oxidase; Provisional
Probab=90.95 E-value=5.7 Score=41.04 Aligned_cols=107 Identities=15% Similarity=0.109 Sum_probs=68.9
Q ss_pred HHHHHHhhhc----CCCeEEEEeC----ChHhHHHHHHcCCCEEEEecCCchHHHHhhhcCCHHHHHHHHHHHHHHHHhC
Q 018252 183 RDVMEAVRDL----EGARLPVLTP----NLKGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVL 254 (359)
Q Consensus 183 ~ev~~~l~~~----~~~~l~~l~~----n~~gie~a~~aGv~~V~i~~s~S~~~~~~n~~~t~~e~l~~i~~~i~~Ak~~ 254 (359)
..+++.+++. ++.++..=++ +.+-++...++|+.+|.+-+..-+-...+.+|+.. ..+.+.+.++.++++
T Consensus 134 ~~ll~~i~~~~~l~~~~eitiE~~p~~~t~e~l~~l~~aGvnRiSiGVQSf~d~vLk~lgR~~--~~~~~~~~i~~l~~~ 211 (449)
T PRK09058 134 ARLITALREYLPLAPDCEITLEGRINGFDDEKADAALDAGANRFSIGVQSFNTQVRRRAGRKD--DREEVLARLEELVAR 211 (449)
T ss_pred HHHHHHHHHhCCCCCCCEEEEEeCcCcCCHHHHHHHHHcCCCEEEecCCcCCHHHHHHhCCCC--CHHHHHHHHHHHHhC
Confidence 4445555432 3456655553 23567888889999999866332222333455421 234556777888888
Q ss_pred C-CcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHHCCcCEEEE
Q 018252 255 S-IPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISL 296 (359)
Q Consensus 255 G-~~V~~~is~~fg~~~~~r~~~e~l~~~a~~l~~~Gad~I~L 296 (359)
| ..+.+.++ ||.|.. +.+.+.+-++.+.+.|++.|.+
T Consensus 212 g~~~v~~DlI--~GlPgq---T~e~~~~~l~~~~~l~~~~is~ 249 (449)
T PRK09058 212 DRAAVVCDLI--FGLPGQ---TPEIWQQDLAIVRDLGLDGVDL 249 (449)
T ss_pred CCCcEEEEEE--eeCCCC---CHHHHHHHHHHHHhcCCCEEEE
Confidence 8 56776665 888754 6677778888888999987764
No 338
>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302.
Probab=90.95 E-value=1.8 Score=43.92 Aligned_cols=89 Identities=8% Similarity=0.032 Sum_probs=60.6
Q ss_pred HHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHHCCcCEEEEcCC-------CCCCcHHHHHHHHHH
Q 018252 242 VRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDT-------IGVGTPGTVVPMLEA 314 (359)
Q Consensus 242 ~~i~~~i~~Ak~~G~~V~~~is~~fg~~~~~r~~~e~l~~~a~~l~~~Gad~I~L~DT-------~G~~~P~~v~~lv~~ 314 (359)
+.+.++++.+++.+..+.. |.++..+.++++.+.++|++.|.+-.| .|...|..+.++++.
T Consensus 119 ~l~~~ii~~vr~a~Vtvki------------Rl~~~~~~e~a~~l~eAGad~I~ihgrt~~q~~~sg~~~p~~l~~~i~~ 186 (369)
T TIGR01304 119 ELLGERIAEVRDSGVITAV------------RVSPQNAREIAPIVVKAGADLLVIQGTLVSAEHVSTSGEPLNLKEFIGE 186 (369)
T ss_pred HHHHHHHHHHHhcceEEEE------------ecCCcCHHHHHHHHHHCCCCEEEEeccchhhhccCCCCCHHHHHHHHHH
Confidence 3455667777777643321 335567889999999999999998755 355678776666654
Q ss_pred HHHhCCCceEEEEeCCCCCcHHHHHHHHHHcCCCEEe
Q 018252 315 VMAVVPVEKLAVHLHDTYGQSLPNILISLQVSPMHAK 351 (359)
Q Consensus 315 l~~~~p~~~L~~H~HNd~GLAlANalaAv~AGa~~ID 351 (359)
++ +++- + .+ -....-++.++++||+.|.
T Consensus 187 ----~~-IPVI-~--G~-V~t~e~A~~~~~aGaDgV~ 214 (369)
T TIGR01304 187 ----LD-VPVI-A--GG-VNDYTTALHLMRTGAAGVI 214 (369)
T ss_pred ----CC-CCEE-E--eC-CCCHHHHHHHHHcCCCEEE
Confidence 33 4443 2 22 4456778889999999986
No 339
>PRK13758 anaerobic sulfatase-maturase; Provisional
Probab=90.88 E-value=14 Score=36.56 Aligned_cols=162 Identities=14% Similarity=0.102 Sum_probs=91.2
Q ss_pred CCCHHHHHHHHHHHHhCCCCEEEEecc-CCCCCcCCCCC---HHHHHHHhhhc--CCCeE-EEEeCCh-----HhHHHHH
Q 018252 144 TVPTGVKVELIRRLVSSGLPVVEATSF-VSPKWVPQLAD---ARDVMEAVRDL--EGARL-PVLTPNL-----KGFEAAI 211 (359)
Q Consensus 144 ~~~~~~k~~ia~~L~~aGv~~IEvG~f-vspk~vPq~~D---~~ev~~~l~~~--~~~~l-~~l~~n~-----~gie~a~ 211 (359)
.++.+.-.++++.+.+.+...+.+.++ .. |-+.. ..++++.+++. .+..+ ..++.|- +-++...
T Consensus 38 ~m~~~~~~~~i~~~~~~~~~~~~i~~~GGE----Pll~~~~~~~~~~~~~~~~~~~~~~~~~~i~TNG~ll~~~~~~~l~ 113 (370)
T PRK13758 38 IMRDEVLESMVKRVLNEAEGHCSFAFQGGE----PTLAGLEFFEELMELQRKHNYKNLKIYNSLQTNGTLIDESWAKFLS 113 (370)
T ss_pred CCCHHHHHHHHHHHHhccCCceEEEEECCc----cccCChHHHHHHHHHHHHhccCCCeEEEEEEecCEecCHHHHHHHH
Confidence 578888888888766654444445443 22 33432 24556666653 23433 3444442 3345555
Q ss_pred HcCCCEEEEecCCc-hHHHHhhhcCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHHCC
Q 018252 212 AAGAKEVAIFASAS-EAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMG 290 (359)
Q Consensus 212 ~aGv~~V~i~~s~S-~~~~~~n~~~t~~e~l~~i~~~i~~Ak~~G~~V~~~is~~fg~~~~~r~~~e~l~~~a~~l~~~G 290 (359)
+.++ .|.+.+... +.|........-...++++.+.++.+++.|+++...+. +. +.+.+++.++++.+.+.|
T Consensus 114 ~~~~-~v~iSlDg~~~~hd~~R~~~~g~~~f~~v~~~i~~l~~~~~~~~i~~~--v~-----~~n~~~l~~i~~~~~~~g 185 (370)
T PRK13758 114 ENKF-LVGLSMDGPKEIHNLNRKDCCGLDTFSKVERAAELFKKYKVEFNILCV--VT-----SNTARHVNKIYKYFKEKD 185 (370)
T ss_pred HcCc-eEEEeecCCHHHhccccCCCCCCccHHHHHHHHHHHHHhCCCceEEEE--ec-----cccccCHHHHHHHHHHcC
Confidence 6665 777766543 33433211011234567777778888888876644332 21 344556777888888899
Q ss_pred cCEEEEc---CCCC--------CCcHHHHHHHHHHHHH
Q 018252 291 CFEISLG---DTIG--------VGTPGTVVPMLEAVMA 317 (359)
Q Consensus 291 ad~I~L~---DT~G--------~~~P~~v~~lv~~l~~ 317 (359)
++.+.+. +..| ...|.++.+++..+.+
T Consensus 186 ~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~l~~ 223 (370)
T PRK13758 186 FKFLQFINCLDPLYEEKGKYNYSLKPKDYTKFLKNLFD 223 (370)
T ss_pred CCeEeeeeccCccccccCCCcCccCHHHHHHHHHHHHH
Confidence 9877542 2222 3567777777666654
No 340
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=90.87 E-value=5 Score=38.81 Aligned_cols=92 Identities=14% Similarity=0.059 Sum_probs=59.4
Q ss_pred HhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHHCC--cCEEEE--c--CCC--C---CCcHHHHHHHHHHHHHhCC
Q 018252 252 KVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMG--CFEISL--G--DTI--G---VGTPGTVVPMLEAVMAVVP 320 (359)
Q Consensus 252 k~~G~~V~~~is~~fg~~~~~r~~~e~l~~~a~~l~~~G--ad~I~L--~--DT~--G---~~~P~~v~~lv~~l~~~~p 320 (359)
++.+.++.+.|. | .+++.+.+.++.+.+++ +|.|.| . -+. | ...|+.+.++++++++.++
T Consensus 87 ~~~~~pl~~qi~---g------~~~~~~~~~a~~~~~~~~~~d~ielN~~cP~~~~~g~~l~~~~~~~~eiv~~vr~~~~ 157 (300)
T TIGR01037 87 EEFPTPLIASVY---G------SSVEEFAEVAEKLEKAPPYVDAYELNLSCPHVKGGGIAIGQDPELSADVVKAVKDKTD 157 (300)
T ss_pred ccCCCcEEEEee---c------CCHHHHHHHHHHHHhccCccCEEEEECCCCCCCCCccccccCHHHHHHHHHHHHHhcC
Confidence 444555655442 2 36888899999888764 775544 2 111 1 2468899999999998764
Q ss_pred CceEEEEeCCCCCcHHHHHHHHHHcCCCEEece
Q 018252 321 VEKLAVHLHDTYGQSLPNILISLQVSPMHAKPC 353 (359)
Q Consensus 321 ~~~L~~H~HNd~GLAlANalaAv~AGa~~ID~t 353 (359)
++|.+-.--+.--...-+..+.++|++.|.++
T Consensus 158 -~pv~vKi~~~~~~~~~~a~~l~~~G~d~i~v~ 189 (300)
T TIGR01037 158 -VPVFAKLSPNVTDITEIAKAAEEAGADGLTLI 189 (300)
T ss_pred -CCEEEECCCChhhHHHHHHHHHHcCCCEEEEE
Confidence 46666554333334455566778999998754
No 341
>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.
Probab=90.75 E-value=10 Score=32.77 Aligned_cols=172 Identities=19% Similarity=0.120 Sum_probs=92.6
Q ss_pred HHHHHHHHHHHhCCCCEEEEecc-CCCCCcCCCCCHHHHHHHhhhcCCCeEEE-E-eCCh-HhH----HHHHHcCCCEEE
Q 018252 148 GVKVELIRRLVSSGLPVVEATSF-VSPKWVPQLADARDVMEAVRDLEGARLPV-L-TPNL-KGF----EAAIAAGAKEVA 219 (359)
Q Consensus 148 ~~k~~ia~~L~~aGv~~IEvG~f-vspk~vPq~~D~~ev~~~l~~~~~~~l~~-l-~~n~-~gi----e~a~~aGv~~V~ 219 (359)
+.-.+.++.+.+.|++.|+++.. .++.... ....+++..+....+..+.+ + +.+. ..+ +.+.++|++.|.
T Consensus 12 ~~~~~~~~~~~~~G~~~v~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~d~v~ 89 (200)
T cd04722 12 GDPVELAKAAAEAGADAIIVGTRSSDPEEAE--TDDKEVLKEVAAETDLPLGVQLAINDAAAAVDIAAAAARAAGADGVE 89 (200)
T ss_pred HHHHHHHHHHHcCCCCEEEEeeEEECcccCC--CccccHHHHHHhhcCCcEEEEEccCCchhhhhHHHHHHHHcCCCEEE
Confidence 57788999999999999999973 2222111 11101233333333333322 2 2222 223 478889999988
Q ss_pred EecCCchHHHHhhhcCCHHHHHHHHHHHHHHHHhC--CCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHHCCcCEEEEc
Q 018252 220 IFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVL--SIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLG 297 (359)
Q Consensus 220 i~~s~S~~~~~~n~~~t~~e~l~~i~~~i~~Ak~~--G~~V~~~is~~fg~~~~~r~~~e~l~~~a~~l~~~Gad~I~L~ 297 (359)
+....... .+...++++.+++. ++.+...+... .+.+. + .+.+.|++.|.+.
T Consensus 90 l~~~~~~~-------------~~~~~~~~~~i~~~~~~~~v~~~~~~~--------~~~~~----~-~~~~~g~d~i~~~ 143 (200)
T cd04722 90 IHGAVGYL-------------AREDLELIRELREAVPDVKVVVKLSPT--------GELAA----A-AAEEAGVDEVGLG 143 (200)
T ss_pred EeccCCcH-------------HHHHHHHHHHHHHhcCCceEEEEECCC--------Cccch----h-hHHHcCCCEEEEc
Confidence 86543211 12223444444554 66664444311 11111 0 1678899999887
Q ss_pred CCCCCCc----HHHHHHHHHHHHHhCCCceEEEEeCCCCCcHH-HHHHHHHHcCCCEEec
Q 018252 298 DTIGVGT----PGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSL-PNILISLQVSPMHAKP 352 (359)
Q Consensus 298 DT~G~~~----P~~v~~lv~~l~~~~p~~~L~~H~HNd~GLAl-ANalaAv~AGa~~ID~ 352 (359)
...+... +......+..+++. +.++|-. +-|... .|+..++++||+.|.+
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~pi~~----~GGi~~~~~~~~~~~~Gad~v~v 198 (200)
T cd04722 144 NGGGGGGGRDAVPIADLLLILAKRG-SKVPVIA----GGGINDPEDAAEALALGADGVIV 198 (200)
T ss_pred CCcCCCCCccCchhHHHHHHHHHhc-CCCCEEE----ECCCCCHHHHHHHHHhCCCEEEe
Confidence 6544322 11112333444443 3355555 346666 8888999999999875
No 342
>PRK09234 fbiC FO synthase; Reviewed
Probab=90.73 E-value=23 Score=39.82 Aligned_cols=199 Identities=12% Similarity=0.043 Sum_probs=117.7
Q ss_pred CCCCCCHHHHHHHHHHHHhCCCCEEEEeccCCCCC-cCCC----------CCHHHHHHHhhhcC---CC--eEEEEeCCh
Q 018252 141 EKNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKW-VPQL----------ADARDVMEAVRDLE---GA--RLPVLTPNL 204 (359)
Q Consensus 141 ~~~~~~~~~k~~ia~~L~~aGv~~IEvG~fvspk~-vPq~----------~D~~ev~~~l~~~~---~~--~l~~l~~n~ 204 (359)
....++.++.++.++...+.|+..+=+.+...|.. .++. .+.+.+.+.++.+. +. .+..-.-+.
T Consensus 98 ~~~~ls~eEIl~~a~~~~~~G~~e~l~t~G~~P~~~~~~~~~~l~~~gy~~~~ey~~~~~~~ik~~~gl~p~i~~G~ls~ 177 (843)
T PRK09234 98 EAAYLSPDEVLDIARAGAAAGCKEALFTLGDRPEDRWPEAREWLDERGYDSTLDYVRAMAIRVLEETGLLPHLNPGVMSW 177 (843)
T ss_pred ccccCCHHHHHHHHHHHHHCCCCEEEEecCCCCccccccccccccccccccHHHHHHHHHHHHHHhcCCCceeeeCCCCH
Confidence 35679999999999999999999987776655542 1110 11344444444321 21 121122245
Q ss_pred HhHHHHHHcCCCEEEEecCC-chHH-HHhh------hcCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCH
Q 018252 205 KGFEAAIAAGAKEVAIFASA-SEAF-SKSN------INCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPP 276 (359)
Q Consensus 205 ~gie~a~~aGv~~V~i~~s~-S~~~-~~~n------~~~t~~e~l~~i~~~i~~Ak~~G~~V~~~is~~fg~~~~~r~~~ 276 (359)
..++...++|++ ..+..-. ++.+ .+.. .++..++ + .++++.|+++|+++...+. ||- .+ ++
T Consensus 178 ~E~~~Lk~~g~s-~gl~lEt~~~~l~~~~g~~h~~~P~K~~~~---R-L~ti~~A~~lGi~~tsG~L--~Gi-GE---t~ 246 (843)
T PRK09234 178 SELARLKPVAPS-MGMMLETTSRRLFEEKGGPHYGSPDKDPAV---R-LRVLEDAGRLSVPFTTGIL--IGI-GE---TL 246 (843)
T ss_pred HHHHHHHHhcCc-CCCCHHHHHHHHHHhhcccccCCCCCCHHH---H-HHHHHHHHHcCCCccceEE--EEC-CC---CH
Confidence 677777777775 3333222 2322 2110 1222322 3 5889999999999876665 663 12 55
Q ss_pred HHHHHHHHHHHHC-----CcCEEEE------cCCC----CCCcHHHHHHHHHHHHHhCCCceEEEEe-CCCCCcHHHHHH
Q 018252 277 SKVAYVAKELHDM-----GCFEISL------GDTI----GVGTPGTVVPMLEAVMAVVPVEKLAVHL-HDTYGQSLPNIL 340 (359)
Q Consensus 277 e~l~~~a~~l~~~-----Gad~I~L------~DT~----G~~~P~~v~~lv~~l~~~~p~~~L~~H~-HNd~GLAlANal 340 (359)
++.++.+..+.++ |+.+|.+ .+|- ...+|.++.++++..|-.+|.. +.+-. -|..|.. -+.
T Consensus 247 edRve~L~~LR~Lq~~~g~~~evi~~~F~p~~gT~l~~~~~~s~~e~Lr~iAvaRliL~~~-~~Iqa~~~l~g~~--~~~ 323 (843)
T PRK09234 247 AERAESLFAIRKLHREYGHIQEVIVQNFRAKPDTAMAGVPDAGLEELLATIAVARLVLGPK-MRIQAPPNLVSGD--ECA 323 (843)
T ss_pred HHHHHHHHHHHHhhHhhCCCcEEeecccccCCCCCCCCCCCCCHHHHHHHHHHHHHhCCCC-ceeeCccccCCHH--HHH
Confidence 6666666666554 4554433 2452 3477888888888877777542 23322 2455543 456
Q ss_pred HHHHcCCCEEece
Q 018252 341 ISLQVSPMHAKPC 353 (359)
Q Consensus 341 aAv~AGa~~ID~t 353 (359)
.++.+||+=+.++
T Consensus 324 ~~L~~GanD~GG~ 336 (843)
T PRK09234 324 ALLGAGIDDWGGV 336 (843)
T ss_pred HHHhcCCCcccch
Confidence 8899999988877
No 343
>KOG0256 consensus 1-aminocyclopropane-1-carboxylate synthase, and related proteins [Signal transduction mechanisms]
Probab=90.69 E-value=2 Score=44.03 Aligned_cols=158 Identities=16% Similarity=0.194 Sum_probs=98.4
Q ss_pred CHHHHHHHHHHHHhCCCCEEEEeccCCCCCc--CCCCCHHHHHHHhhhcCCCeEEEEeCChHhHHHH--HHcCCCEEEEe
Q 018252 146 PTGVKVELIRRLVSSGLPVVEATSFVSPKWV--PQLADARDVMEAVRDLEGARLPVLTPNLKGFEAA--IAAGAKEVAIF 221 (359)
Q Consensus 146 ~~~~k~~ia~~L~~aGv~~IEvG~fvspk~v--Pq~~D~~ev~~~l~~~~~~~l~~l~~n~~gie~a--~~aGv~~V~i~ 221 (359)
=+.-+.++|+-|..+--..+ .|...+.| ..-+-+.+.+..+=..||..+.+-+|--.|+++- +.+|++.|-+.
T Consensus 123 l~~frqa~A~Fm~~~r~~~v---~fdP~~~Vv~~G~T~ane~l~fcLadpgdafLvPtPyY~gfdrdl~~rTgveivpv~ 199 (471)
T KOG0256|consen 123 LPSFRQAVAEFMERARGNRV---KFDPERVVVTNGATSANETLMFCLADPGDAFLVPTPYYPGFDRDLRWRTGVEIVPVH 199 (471)
T ss_pred chHHHHHHHHHHHHHhCCCC---ccCccceEEecccchhhHHHHHHhcCCCceeeecCCCCCcccccceeccCceEEEEE
Confidence 35678888888887511111 01100100 0012233444443345777766666655555544 45799988888
Q ss_pred cCCchHHHHhhhcCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHHCC----cCEEEEc
Q 018252 222 ASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMG----CFEISLG 297 (359)
Q Consensus 222 ~s~S~~~~~~n~~~t~~e~l~~i~~~i~~Ak~~G~~V~~~is~~fg~~~~~r~~~e~l~~~a~~l~~~G----ad~I~L~ 297 (359)
...|..|. .| .++++.+.+.|+++|++|.|-|..-=.+|-++.++++.+..+++-+.+-. +|+|+-.
T Consensus 200 c~Ss~~f~-----it----v~alE~A~~~A~~~~~kVkGvlitNPsNPLG~~~~~e~L~~ll~Fa~~kniHvI~DEIya~ 270 (471)
T KOG0256|consen 200 CSSSNGFQ-----IT----VEALEAALNQARKLGLKVKGVLITNPSNPLGTTLSPEELISLLNFASRKNIHVISDEIYAG 270 (471)
T ss_pred eecCCCcc-----cc----HHHHHHHHHHHHHhCCceeEEEEeCCCCCCCCccCHHHHHHHHHHHhhcceEEEeehhhcc
Confidence 77666543 23 34567888999999999999887555568888899999999999888766 4677766
Q ss_pred CCCCCCcHHHHHHHHHHH
Q 018252 298 DTIGVGTPGTVVPMLEAV 315 (359)
Q Consensus 298 DT~G~~~P~~v~~lv~~l 315 (359)
-..+-..=..|.++.+..
T Consensus 271 sVF~~~~F~Sv~ev~~~~ 288 (471)
T KOG0256|consen 271 SVFDKSEFRSVLEVRKDP 288 (471)
T ss_pred cccCccCceEHHHHhhcc
Confidence 666655433444444433
No 344
>TIGR03700 mena_SCO4494 putative menaquinone biosynthesis protein, SCO4494 family. Members of this protein family appear to be involved in menaquinone biosynthesis by an alternate pathway via futalosine, based on close phylogenetic correlation with known markers of the futalosine pathway, gene clustering in many organisms, and paralogy with the SCO4550 protein.
Probab=90.68 E-value=0.99 Score=45.03 Aligned_cols=79 Identities=14% Similarity=0.132 Sum_probs=56.7
Q ss_pred CCCHHHHHHHHHHHHHCCcCEEEEcCCCCCC-cHHHHHHHHHHHHHhCCCceEEE-------EeCCCCCcHHHHHHHHH-
Q 018252 273 AIPPSKVAYVAKELHDMGCFEISLGDTIGVG-TPGTVVPMLEAVMAVVPVEKLAV-------HLHDTYGQSLPNILISL- 343 (359)
Q Consensus 273 r~~~e~l~~~a~~l~~~Gad~I~L~DT~G~~-~P~~v~~lv~~l~~~~p~~~L~~-------H~HNd~GLAlANalaAv- 343 (359)
+.+++++.+.++++.+.|+++|.|.+....- ..+.+.++++.+++.+|++.+.. |.=+..|+.....+..+
T Consensus 78 ~l~~eeI~~~a~~~~~~G~~~v~l~~G~~p~~~~~~~~e~i~~Ik~~~p~i~i~~~~~~ei~~~~~~~g~~~~e~l~~Lk 157 (351)
T TIGR03700 78 AMSLEEIVARVKEAYAPGATEVHIVGGLHPNLPFEWYLDMIRTLKEAYPDLHVKAFTAVEIHHFSKISGLPTEEVLDELK 157 (351)
T ss_pred CCCHHHHHHHHHHHHHCCCcEEEEecCCCCCCCHHHHHHHHHHHHHHCCCceEEeCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 3589999999999999999999997433222 23678899999999988643332 12234688777756654
Q ss_pred HcCCCEEe
Q 018252 344 QVSPMHAK 351 (359)
Q Consensus 344 ~AGa~~ID 351 (359)
+||++.+.
T Consensus 158 eAGld~~~ 165 (351)
T TIGR03700 158 EAGLDSMP 165 (351)
T ss_pred HcCCCcCC
Confidence 48998876
No 345
>PRK14337 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=90.60 E-value=14 Score=38.02 Aligned_cols=146 Identities=15% Similarity=0.158 Sum_probs=84.4
Q ss_pred CCCCHHHHHHHHHHHHhCCCCEEEEec--cC--CCCCcCCCCCHHHHHHHhhhcCCC---eEEEEeCC---hHhHHHHHH
Q 018252 143 NTVPTGVKVELIRRLVSSGLPVVEATS--FV--SPKWVPQLADARDVMEAVRDLEGA---RLPVLTPN---LKGFEAAIA 212 (359)
Q Consensus 143 ~~~~~~~k~~ia~~L~~aGv~~IEvG~--fv--spk~vPq~~D~~ev~~~l~~~~~~---~l~~l~~n---~~gie~a~~ 212 (359)
...+.+..++-++.|.+.|++.|.+.. +. ..+..+......++++.+...++. ++...-|+ .+-++...+
T Consensus 175 rsr~~e~Iv~Ei~~l~~~G~~eI~l~~~~~~~yg~d~~~~~~~l~~Ll~~l~~~~g~~~ir~~~~~p~~i~~ell~~l~~ 254 (446)
T PRK14337 175 KSRSSAAVLDECRALVDRGAREITLLGQNVNSYGQDKHGDGTSFAQLLHKVAALPGLERLRFTTPHPKDIAPEVIEAFGE 254 (446)
T ss_pred eeCCHHHHHHHHHHHHHCCCeEEEEEecCccccccCCCCCCccHHHHHHHHHhcCCCcEEEEccCCcccCCHHHHHHHHh
Confidence 457789999999999999999888753 10 000000011334455555544443 33222242 233444444
Q ss_pred --cCCCEEEEec-CCchHHHHhhhcCCHHHHHHHHHHHHHHHHhC--CCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHH
Q 018252 213 --AGAKEVAIFA-SASEAFSKSNINCSIEDSLVRYRAVAHAAKVL--SIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELH 287 (359)
Q Consensus 213 --aGv~~V~i~~-s~S~~~~~~n~~~t~~e~l~~i~~~i~~Ak~~--G~~V~~~is~~fg~~~~~r~~~e~l~~~a~~l~ 287 (359)
.+...+++-+ +.|+--.+ .+|+.. ..+.+.++++.+++. |+.+..++. +|.|.+ +.+.+.+.++.+.
T Consensus 255 ~~~~~~~l~iglQSgsd~vLk-~M~R~~--t~e~~~~~v~~lr~~~~~i~i~~d~I--vG~PgE---T~ed~~~tl~~l~ 326 (446)
T PRK14337 255 LPNLCPRLHLPLQSGSDRILK-AMGRKY--DMARYLDIVTDLRAARPDIALTTDLI--VGFPGE---TEEDFEQTLEAMR 326 (446)
T ss_pred CCcccCeEEECCCCCCHHHHH-hCCCCC--CHHHHHHHHHHHHHhCCCCeEEEeEE--EECCCC---CHHHHHHHHHHHH
Confidence 3577888865 44544333 455532 134556677777776 566777775 787766 4666777777777
Q ss_pred HCCcCEEEE
Q 018252 288 DMGCFEISL 296 (359)
Q Consensus 288 ~~Gad~I~L 296 (359)
+.+.+.+.+
T Consensus 327 ~~~~~~~~~ 335 (446)
T PRK14337 327 TVGFASSFS 335 (446)
T ss_pred hcCCCeeEE
Confidence 787775443
No 346
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=90.60 E-value=17 Score=35.14 Aligned_cols=183 Identities=15% Similarity=0.100 Sum_probs=97.9
Q ss_pred HHHHHHHhCCCCEEEEecc-CCCCC-cCC---------------C--CCHHHHHHHhhh-cC--CCeE-EEE-eCChHhH
Q 018252 152 ELIRRLVSSGLPVVEATSF-VSPKW-VPQ---------------L--ADARDVMEAVRD-LE--GARL-PVL-TPNLKGF 207 (359)
Q Consensus 152 ~ia~~L~~aGv~~IEvG~f-vspk~-vPq---------------~--~D~~ev~~~l~~-~~--~~~l-~~l-~~n~~gi 207 (359)
+.++.+.++|+-.|++++. ..|.. .|. + ...+.+++.+.. .. +..+ .-+ ..+.+++
T Consensus 27 ~~~~~~~~~g~g~v~~kti~~~~~~g~~~pr~~~~~~~~~n~~g~~~~g~~~~~~~~~~~~~~~~~p~i~si~g~~~~~~ 106 (301)
T PRK07259 27 EYARFYDLNGLGAIVTKSTTLEPREGNPTPRIAETPGGMLNAIGLQNPGVDAFIEEELPWLEEFDTPIIANVAGSTEEEY 106 (301)
T ss_pred HHHHHhhhcCCcEEEeCCCCCCCCCCCCCCcEEecCCceeecCCCCCcCHHHHHHHHHHHHhccCCcEEEEeccCCHHHH
Confidence 6778889999999999973 22211 111 1 113344444432 11 2222 222 2244554
Q ss_pred H----HHHHcC-CCEEEEec--CCchHHHHhhhcCCHHHHHHHHHHHHHHHHhC-CCcEEEEEeeeecCCCCCCCCHHHH
Q 018252 208 E----AAIAAG-AKEVAIFA--SASEAFSKSNINCSIEDSLVRYRAVAHAAKVL-SIPVRGYVSCVVGCPVEGAIPPSKV 279 (359)
Q Consensus 208 e----~a~~aG-v~~V~i~~--s~S~~~~~~n~~~t~~e~l~~i~~~i~~Ak~~-G~~V~~~is~~fg~~~~~r~~~e~l 279 (359)
. ++.++| +|-|.+-+ |... +.-..++.+ .+.+.++++..|+. .+.|.+-++ .+.+.+
T Consensus 107 ~~~a~~~~~aG~~D~iElN~~cP~~~-~gg~~~~~~----~~~~~eiv~~vr~~~~~pv~vKl~----------~~~~~~ 171 (301)
T PRK07259 107 AEVAEKLSKAPNVDAIELNISCPNVK-HGGMAFGTD----PELAYEVVKAVKEVVKVPVIVKLT----------PNVTDI 171 (301)
T ss_pred HHHHHHHhccCCcCEEEEECCCCCCC-CCccccccC----HHHHHHHHHHHHHhcCCCEEEEcC----------CCchhH
Confidence 3 444578 89766633 3211 000112222 34455666666655 455544443 133577
Q ss_pred HHHHHHHHHCCcCEEEEcCCCCC------------------CcH----HHHHHHHHHHHHhCCCceEEEEeCCCCCcHHH
Q 018252 280 AYVAKELHDMGCFEISLGDTIGV------------------GTP----GTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLP 337 (359)
Q Consensus 280 ~~~a~~l~~~Gad~I~L~DT~G~------------------~~P----~~v~~lv~~l~~~~p~~~L~~H~HNd~GLAlA 337 (359)
.++++.+.++|+|-|.+-.|+.. ..+ ....+++..+++.++ ++|-.=+--+ ...
T Consensus 172 ~~~a~~l~~~G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~p~~l~~v~~i~~~~~-ipvi~~GGI~---~~~ 247 (301)
T PRK07259 172 VEIAKAAEEAGADGLSLINTLKGMAIDIKTRKPILANVTGGLSGPAIKPIALRMVYQVYQAVD-IPIIGMGGIS---SAE 247 (301)
T ss_pred HHHHHHHHHcCCCEEEEEccccccccccccCceeecCCcCccCCcCcccccHHHHHHHHHhCC-CCEEEECCCC---CHH
Confidence 88999999999998877544311 111 113467777777764 4554422222 246
Q ss_pred HHHHHHHcCCCEEece
Q 018252 338 NILISLQVSPMHAKPC 353 (359)
Q Consensus 338 NalaAv~AGa~~ID~t 353 (359)
.+...+.+||+.|-.+
T Consensus 248 da~~~l~aGAd~V~ig 263 (301)
T PRK07259 248 DAIEFIMAGASAVQVG 263 (301)
T ss_pred HHHHHHHcCCCceeEc
Confidence 6778888999987654
No 347
>PRK14339 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=90.53 E-value=22 Score=36.35 Aligned_cols=143 Identities=15% Similarity=0.174 Sum_probs=81.7
Q ss_pred CCCHHHHHHHHHHHHhCCCCEEEEec---cCCCC-Cc--CCCCCHHHHHHHhhhcCCCe-EE--EEeCC---hHhHHHHH
Q 018252 144 TVPTGVKVELIRRLVSSGLPVVEATS---FVSPK-WV--PQLADARDVMEAVRDLEGAR-LP--VLTPN---LKGFEAAI 211 (359)
Q Consensus 144 ~~~~~~k~~ia~~L~~aGv~~IEvG~---fvspk-~v--Pq~~D~~ev~~~l~~~~~~~-l~--~l~~n---~~gie~a~ 211 (359)
..+.++.++-++.|.+.|++.|-+.. +...+ .. +...+..++++.+...++.. +. .+-|. .+-++...
T Consensus 155 sr~~e~I~~Ei~~l~~~G~keI~l~~~~~~~yg~d~~~~~~~~~l~~Ll~~l~~~~g~~~ir~~s~~p~~~~~ell~~~~ 234 (420)
T PRK14339 155 SIPMDLILKEAEKAVNNGAKEIFLLGQNVNNYGKRFSSEHEKVDFSDLLDKLSEIEGLERIRFTSPHPLHMDDKFLEEFA 234 (420)
T ss_pred CCCHHHHHHHHHHHHHCCCcEEEEeeeccccccCCCcCCcccccHHHHHHHHhcCCCccEEEECCCChhhcCHHHHHHHH
Confidence 46899999999999999999987643 11111 00 00123556666665555542 22 22232 23355555
Q ss_pred Hc--CCCEEEEec-CCchHHHHhhhcCCHHHHHHHHHHHHHHHHhC--CCcEEEEEeeeecCCCCCCCCHHHHHHHHHHH
Q 018252 212 AA--GAKEVAIFA-SASEAFSKSNINCSIEDSLVRYRAVAHAAKVL--SIPVRGYVSCVVGCPVEGAIPPSKVAYVAKEL 286 (359)
Q Consensus 212 ~a--Gv~~V~i~~-s~S~~~~~~n~~~t~~e~l~~i~~~i~~Ak~~--G~~V~~~is~~fg~~~~~r~~~e~l~~~a~~l 286 (359)
++ |...+++.+ +.|+--. ..+|+.. ..+.+.++++.+++. |+.+..++. +|.|.+ +.+.+.+.++.+
T Consensus 235 ~~~~~~~~l~iglQSgsd~vL-k~M~R~~--t~~~~~~~v~~lr~~~p~i~i~~d~I--vGfPgE---Teedf~~Tl~fl 306 (420)
T PRK14339 235 KNPKICKSIHMPLQSGSSEIL-KAMKRGY--TKEWFLNRAEKLRALVPEVSISTDII--VGFPGE---SDKDFEDTMDVL 306 (420)
T ss_pred cCCCccCceEeCCccCCHHHH-HhccCCC--CHHHHHHHHHHHHHHCCCCEEEEEEE--EECCCC---CHHHHHHHHHHH
Confidence 55 467888865 4444433 3455432 134555667777776 666777665 888876 445555555555
Q ss_pred HHCCcCEE
Q 018252 287 HDMGCFEI 294 (359)
Q Consensus 287 ~~~Gad~I 294 (359)
.+.+.+.+
T Consensus 307 ~~l~~~~~ 314 (420)
T PRK14339 307 EKVRFEQI 314 (420)
T ss_pred HhcCCCEE
Confidence 56666543
No 348
>PRK14326 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=90.52 E-value=13 Score=39.14 Aligned_cols=142 Identities=15% Similarity=0.191 Sum_probs=82.0
Q ss_pred CCCCHHHHHHHHHHHHhCCCCEEEEecc-CCCCCcCCCCC---HHHHHHHhhhcCCC---eEEEEeCC---hHhHHHHHH
Q 018252 143 NTVPTGVKVELIRRLVSSGLPVVEATSF-VSPKWVPQLAD---ARDVMEAVRDLEGA---RLPVLTPN---LKGFEAAIA 212 (359)
Q Consensus 143 ~~~~~~~k~~ia~~L~~aGv~~IEvG~f-vspk~vPq~~D---~~ev~~~l~~~~~~---~l~~l~~n---~~gie~a~~ 212 (359)
...+.+..++=++.|.+.|++.|.+..- ... +.-.+.+ ..++++.+...++. ++...-|. .+-++...+
T Consensus 184 rsr~~e~Vv~Ei~~l~~~g~~ei~l~d~n~~~-yG~d~~~~~~l~~Ll~~l~~i~~l~~ir~~~~~p~~~~~ell~~m~~ 262 (502)
T PRK14326 184 KDRRPGDILAEVQALVDEGVLEVTLLGQNVNA-YGVSFGDRGAFSKLLRACGEIDGLERVRFTSPHPAEFTDDVIEAMAE 262 (502)
T ss_pred ccCCHHHHHHHHHHHHHCCCceEEEEeecccc-cccCCCCHHHHHHHHHHHHhcCCccEEEEeccChhhCCHHHHHHHHh
Confidence 4577899999999999999999876431 000 0000112 23345555444443 33322232 233555556
Q ss_pred cC--CCEEEEec-CCchHHHHhhhcCCHHHHHHHHHHHHHHHHhC--CCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHH
Q 018252 213 AG--AKEVAIFA-SASEAFSKSNINCSIEDSLVRYRAVAHAAKVL--SIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELH 287 (359)
Q Consensus 213 aG--v~~V~i~~-s~S~~~~~~n~~~t~~e~l~~i~~~i~~Ak~~--G~~V~~~is~~fg~~~~~r~~~e~l~~~a~~l~ 287 (359)
+| ...+++-+ +.|+--.+ .+|+.. ..+.+.++++.+++. |+.+.+++. +|.|.+ +.+.+.+.++.+.
T Consensus 263 ~g~~~~~l~lglQSgsd~iLk-~m~R~~--t~~~~~~~v~~lr~~~~~i~i~~~~I--vGfPgE---T~edf~~Tl~~i~ 334 (502)
T PRK14326 263 TPNVCPQLHMPLQSGSDRVLR-AMRRSY--RSERFLGILEKVRAAMPDAAITTDII--VGFPGE---TEEDFQATLDVVR 334 (502)
T ss_pred cCCcCCcEEeccCCCCHHHHH-hcCCCC--CHHHHHHHHHHHHHhCCCCeEEEEEE--EECCCC---CHHHHHHHHHHHH
Confidence 66 67788855 55554433 355532 234566777777775 677777775 788876 4555666666666
Q ss_pred HCCcCE
Q 018252 288 DMGCFE 293 (359)
Q Consensus 288 ~~Gad~ 293 (359)
+.+.+.
T Consensus 335 ~~~~~~ 340 (502)
T PRK14326 335 EARFSS 340 (502)
T ss_pred HcCCCE
Confidence 666663
No 349
>cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=90.51 E-value=14 Score=34.01 Aligned_cols=113 Identities=16% Similarity=0.067 Sum_probs=70.9
Q ss_pred HhHHHHHHcCCCEEEEecCCchHHHHhhhcCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHH
Q 018252 205 KGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAK 284 (359)
Q Consensus 205 ~gie~a~~aGv~~V~i~~s~S~~~~~~n~~~t~~e~l~~i~~~i~~Ak~~G~~V~~~is~~fg~~~~~r~~~e~l~~~a~ 284 (359)
+.++.+.++|++.|.+....+ .+.++.+++.++.+...+ .+. +.++
T Consensus 71 ~~~~~~~~~g~d~v~l~~~~~-------------------~~~~~~~~~~~i~~i~~v-----------~~~----~~~~ 116 (236)
T cd04730 71 ALLEVALEEGVPVVSFSFGPP-------------------AEVVERLKAAGIKVIPTV-----------TSV----EEAR 116 (236)
T ss_pred HHHHHHHhCCCCEEEEcCCCC-------------------HHHHHHHHHcCCEEEEeC-----------CCH----HHHH
Confidence 467888899999988743211 133445566677653211 132 3455
Q ss_pred HHHHCCcCEEEEcC--CCCCCcHH--HHHHHHHHHHHhCCCceEEEEeCCCCCcHH-HHHHHHHHcCCCEEeceeee
Q 018252 285 ELHDMGCFEISLGD--TIGVGTPG--TVVPMLEAVMAVVPVEKLAVHLHDTYGQSL-PNILISLQVSPMHAKPCFTF 356 (359)
Q Consensus 285 ~l~~~Gad~I~L~D--T~G~~~P~--~v~~lv~~l~~~~p~~~L~~H~HNd~GLAl-ANalaAv~AGa~~ID~tl~~ 356 (359)
.+.+.|+|.|.+-. +.|...+. ...++++.+++.++ +++-..+ |... .|+..++++|++.|...-.+
T Consensus 117 ~~~~~gad~i~~~~~~~~G~~~~~~~~~~~~i~~i~~~~~-~Pvi~~G----GI~~~~~v~~~l~~GadgV~vgS~l 188 (236)
T cd04730 117 KAEAAGADALVAQGAEAGGHRGTFDIGTFALVPEVRDAVD-IPVIAAG----GIADGRGIAAALALGADGVQMGTRF 188 (236)
T ss_pred HHHHcCCCEEEEeCcCCCCCCCccccCHHHHHHHHHHHhC-CCEEEEC----CCCCHHHHHHHHHcCCcEEEEchhh
Confidence 66778999887632 23444432 34567777777654 4666644 6654 78899999999999876433
No 350
>PF03932 CutC: CutC family; InterPro: IPR005627 Copper transport in Escherichia coli is mediated by the products of at least six genes, cutA, cutB, cutC, cutD, cutE, and cutF. A mutation in one or more of these genes results in an increased copper sensitivity. Members of this family are between 200 and 300 amino acids in length and are found in both eukaryotes and bacteria.; GO: 0005507 copper ion binding, 0055070 copper ion homeostasis; PDB: 2BDQ_A 3IWP_I 1X8C_B 1X7I_A 1TWD_B.
Probab=90.48 E-value=8.8 Score=35.69 Aligned_cols=133 Identities=17% Similarity=0.153 Sum_probs=73.6
Q ss_pred EEeCChHhHHHHHHcCCCEEEEecCCchHHHHhhhcCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCC--CCCH
Q 018252 199 VLTPNLKGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEG--AIPP 276 (359)
Q Consensus 199 ~l~~n~~gie~a~~aGv~~V~i~~s~S~~~~~~n~~~t~~e~l~~i~~~i~~Ak~~G~~V~~~is~~fg~~~~~--r~~~ 276 (359)
+.+-+..++..|.+.|+++|.+....+. =|.|.. +..++.+.+ ...+++.+=| -|..+ .+++
T Consensus 5 vcv~s~~~a~~A~~~GAdRiELc~~l~~------GGlTPS--~g~i~~~~~---~~~ipv~vMI-----Rpr~gdF~Ys~ 68 (201)
T PF03932_consen 5 VCVESLEDALAAEAGGADRIELCSNLEV------GGLTPS--LGLIRQARE---AVDIPVHVMI-----RPRGGDFVYSD 68 (201)
T ss_dssp EEESSHHHHHHHHHTT-SEEEEEBTGGG------T-B-----HHHHHHHHH---HTTSEEEEE-------SSSS-S---H
T ss_pred EEeCCHHHHHHHHHcCCCEEEECCCccC------CCcCcC--HHHHHHHHh---hcCCceEEEE-----CCCCCCccCCH
Confidence 4456788999999999999999753211 234442 333333333 4566654322 34433 4666
Q ss_pred HHHHHH---HHHHHHCCcCEEEEc--CCCCCCcHHHHHHHHHHHHHhCCCceEEEEeCCCCCcHHHHHHHHH-HcCCCEE
Q 018252 277 SKVAYV---AKELHDMGCFEISLG--DTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISL-QVSPMHA 350 (359)
Q Consensus 277 e~l~~~---a~~l~~~Gad~I~L~--DT~G~~~P~~v~~lv~~l~~~~p~~~L~~H~HNd~GLAlANalaAv-~AGa~~I 350 (359)
+++..+ ++.+.++|++.|.+. +.-|...-..+.++++... +.++.||-=-|.=.-...++..+ +.|+++|
T Consensus 69 ~E~~~M~~dI~~~~~~GadG~VfG~L~~dg~iD~~~~~~Li~~a~----~~~~tFHRAfD~~~d~~~al~~L~~lG~~rV 144 (201)
T PF03932_consen 69 EEIEIMKEDIRMLRELGADGFVFGALTEDGEIDEEALEELIEAAG----GMPVTFHRAFDEVPDPEEALEQLIELGFDRV 144 (201)
T ss_dssp HHHHHHHHHHHHHHHTT-SEEEE--BETTSSB-HHHHHHHHHHHT----TSEEEE-GGGGGSSTHHHHHHHHHHHT-SEE
T ss_pred HHHHHHHHHHHHHHHcCCCeeEEEeECCCCCcCHHHHHHHHHhcC----CCeEEEeCcHHHhCCHHHHHHHHHhcCCCEE
Confidence 665554 456678999976653 5666666666666666543 47888886555555555555554 7899888
Q ss_pred e
Q 018252 351 K 351 (359)
Q Consensus 351 D 351 (359)
=
T Consensus 145 L 145 (201)
T PF03932_consen 145 L 145 (201)
T ss_dssp E
T ss_pred E
Confidence 3
No 351
>PRK09057 coproporphyrinogen III oxidase; Provisional
Probab=90.48 E-value=15 Score=37.06 Aligned_cols=95 Identities=17% Similarity=0.083 Sum_probs=60.1
Q ss_pred CeEEEEe-C---ChHhHHHHHHcCCCEEEEecC-CchHHHHhhhcCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCC
Q 018252 195 ARLPVLT-P---NLKGFEAAIAAGAKEVAIFAS-ASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCP 269 (359)
Q Consensus 195 ~~l~~l~-~---n~~gie~a~~aGv~~V~i~~s-~S~~~~~~n~~~t~~e~l~~i~~~i~~Ak~~G~~V~~~is~~fg~~ 269 (359)
++++.=+ | +.+.++...++|+.+|.+-+. .++- ....+|+. ...+.+.++++.+++.+..|.+.++ +|.|
T Consensus 91 ~eit~E~~P~~i~~e~L~~l~~~GvnrislGvQS~~d~-vL~~l~R~--~~~~~~~~ai~~~~~~~~~v~~dli--~GlP 165 (380)
T PRK09057 91 IEITLEANPTSVEAGRFRGYRAAGVNRVSLGVQALNDA-DLRFLGRL--HSVAEALAAIDLAREIFPRVSFDLI--YARP 165 (380)
T ss_pred ccEEEEECcCcCCHHHHHHHHHcCCCEEEEecccCCHH-HHHHcCCC--CCHHHHHHHHHHHHHhCccEEEEee--cCCC
Confidence 4554444 3 235677788899999988653 3332 22234442 1233445667777777887877775 8877
Q ss_pred CCCCCCHHHHHHHHHHHHHCCcCEEEEc
Q 018252 270 VEGAIPPSKVAYVAKELHDMGCFEISLG 297 (359)
Q Consensus 270 ~~~r~~~e~l~~~a~~l~~~Gad~I~L~ 297 (359)
.. +.+.+.+-.+.+.+.+++.|.+-
T Consensus 166 gq---t~~~~~~~l~~~~~l~p~~is~y 190 (380)
T PRK09057 166 GQ---TLAAWRAELKEALSLAADHLSLY 190 (380)
T ss_pred CC---CHHHHHHHHHHHHhcCCCeEEee
Confidence 54 55566666777778899977665
No 352
>PLN02623 pyruvate kinase
Probab=90.44 E-value=23 Score=38.15 Aligned_cols=155 Identities=13% Similarity=0.120 Sum_probs=95.8
Q ss_pred CCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcCCCCCHHHHHHHhhhc-CCCeEEEEeCChHhHHH---HHHcCCCEEEE
Q 018252 145 VPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDL-EGARLPVLTPNLKGFEA---AIAAGAKEVAI 220 (359)
Q Consensus 145 ~~~~~k~~ia~~L~~aGv~~IEvG~fvspk~vPq~~D~~ev~~~l~~~-~~~~l~~l~~n~~gie~---a~~aGv~~V~i 220 (359)
++..++.. ++.-.+.|+|.|=+.| +.. -.|-.++.+.++.. ..+.+.+-+.+..++++ .++ |+|.|.+
T Consensus 276 lTekD~~d-i~f~~~~~vD~ialSF-Vr~-----a~DV~~~r~~l~~~~~~~~iiakIEt~eaVeNldeIl~-g~DgImI 347 (581)
T PLN02623 276 ITEKDWED-IKFGVENKVDFYAVSF-VKD-----AQVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIIT-ASDGAMV 347 (581)
T ss_pred CCHHHHHH-HHHHHHcCCCEEEECC-CCC-----HHHHHHHHHHHHHcCCcceEEEEECCHHHHHhHHHHHH-hCCEEEE
Confidence 55555555 5777899999987665 431 13555555555542 34566677777766554 333 8887665
Q ss_pred ecCCchHHHHhhhcCCHHHHHHHHHHHHHHHHhCCCcEEEEE----eeeecCCCCCCCCHHHHHHHHHHHHHCCcCEEEE
Q 018252 221 FASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYV----SCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISL 296 (359)
Q Consensus 221 ~~s~S~~~~~~n~~~t~~e~l~~i~~~i~~Ak~~G~~V~~~i----s~~fg~~~~~r~~~e~l~~~a~~l~~~Gad~I~L 296 (359)
- -.|+-.. ++ .++.....+++++.|+++|..+...- ||.+ ++..+| .++.+++.. ...|++.|.|
T Consensus 348 g--rgDLgve--lg--~~~v~~~qk~Ii~~~~~~gKpvivaTQMLESMi~-~~~PTR---AEv~Dva~a-v~dG~d~vmL 416 (581)
T PLN02623 348 A--RGDLGAE--LP--IEEVPLLQEEIIRRCRSMGKPVIVATNMLESMIV-HPTPTR---AEVSDIAIA-VREGADAVML 416 (581)
T ss_pred C--cchhhhh--cC--cHHHHHHHHHHHHHHHHhCCCEEEECchhhhccc-CCCCCc---hhHHHHHHH-HHcCCCEEEe
Confidence 2 2222211 22 36677778999999999999874211 1111 223333 345555553 4569999888
Q ss_pred c-CCCCCCcHHHHHHHHHHHHHh
Q 018252 297 G-DTIGVGTPGTVVPMLEAVMAV 318 (359)
Q Consensus 297 ~-DT~G~~~P~~v~~lv~~l~~~ 318 (359)
. ||.=--.|.+..+.+..+..+
T Consensus 417 s~Eta~G~yPveaV~~m~~I~~~ 439 (581)
T PLN02623 417 SGETAHGKFPLKAVKVMHTVALR 439 (581)
T ss_pred cchhhcCcCHHHHHHHHHHHHHH
Confidence 6 666667899988888887654
No 353
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=90.43 E-value=7.3 Score=35.76 Aligned_cols=135 Identities=13% Similarity=0.089 Sum_probs=76.1
Q ss_pred hHHHHHHcCCCEEEEecCCch-HHHHhhhcCCHHHHHHHHHHHHHHHHhC-CCcEEEEEeeeecCCCCCCCCHHHHHHHH
Q 018252 206 GFEAAIAAGAKEVAIFASASE-AFSKSNINCSIEDSLVRYRAVAHAAKVL-SIPVRGYVSCVVGCPVEGAIPPSKVAYVA 283 (359)
Q Consensus 206 gie~a~~aGv~~V~i~~s~S~-~~~~~n~~~t~~e~l~~i~~~i~~Ak~~-G~~V~~~is~~fg~~~~~r~~~e~l~~~a 283 (359)
..+++.++|++.|.+-..... .......|.+..+..+.+.++++..++. ++.+.+-+...+ .+.+...+++
T Consensus 72 aa~~~~~aG~d~ieln~g~p~~~~~~~~~G~~l~~~~~~~~eii~~v~~~~~~~v~vk~r~~~-------~~~~~~~~~~ 144 (231)
T cd02801 72 AAKIVEELGADGIDLNMGCPSPKVTKGGAGAALLKDPELVAEIVRAVREAVPIPVTVKIRLGW-------DDEEETLELA 144 (231)
T ss_pred HHHHHHhcCCCEEEEeCCCCHHHHhCCCeeehhcCCHHHHHHHHHHHHHhcCCCEEEEEeecc-------CCchHHHHHH
Confidence 345566789998877543211 1122234444444455556666666553 344443333111 1115788999
Q ss_pred HHHHHCCcCEEEEcCCCC---CCcHHHHHHHHHHHHHhCCCceEEEEeCCCCCc-HHHHHHHHHHc-CCCEEece
Q 018252 284 KELHDMGCFEISLGDTIG---VGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQ-SLPNILISLQV-SPMHAKPC 353 (359)
Q Consensus 284 ~~l~~~Gad~I~L~DT~G---~~~P~~v~~lv~~l~~~~p~~~L~~H~HNd~GL-AlANalaAv~A-Ga~~ID~t 353 (359)
+.+.++|++.|.+-+-.. ...|. -.+.++.+++... ++|..-+ |. ...-+..+++. ||+.|-.+
T Consensus 145 ~~l~~~Gvd~i~v~~~~~~~~~~~~~-~~~~~~~i~~~~~-ipvi~~G----gi~~~~d~~~~l~~~gad~V~ig 213 (231)
T cd02801 145 KALEDAGASALTVHGRTREQRYSGPA-DWDYIAEIKEAVS-IPVIANG----DIFSLEDALRCLEQTGVDGVMIG 213 (231)
T ss_pred HHHHHhCCCEEEECCCCHHHcCCCCC-CHHHHHHHHhCCC-CeEEEeC----CCCCHHHHHHHHHhcCCCEEEEc
Confidence 999999999998865432 22233 2355677777543 5665533 22 24556677777 78877543
No 354
>COG1082 IolE Sugar phosphate isomerases/epimerases [Carbohydrate transport and metabolism]
Probab=90.41 E-value=8.1 Score=36.05 Aligned_cols=169 Identities=21% Similarity=0.175 Sum_probs=85.3
Q ss_pred HHHHHHhCCCCEEEEeccCCCCCcCCC-CCHHHHHHHhhhcCCCeEEEEeC--------ChH-----------hHHHHHH
Q 018252 153 LIRRLVSSGLPVVEATSFVSPKWVPQL-ADARDVMEAVRDLEGARLPVLTP--------NLK-----------GFEAAIA 212 (359)
Q Consensus 153 ia~~L~~aGv~~IEvG~fvspk~vPq~-~D~~ev~~~l~~~~~~~l~~l~~--------n~~-----------gie~a~~ 212 (359)
+++...++|++.||++.. ...++- .+.+++.+.++. .++.+..+.+ +.. -++.|.+
T Consensus 20 ~l~~~~~~G~~gvEi~~~---~~~~~~~~~~~~l~~~l~~-~gl~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~ 95 (274)
T COG1082 20 ILRKAAELGFDGVELSPG---DLFPADYKELAELKELLAD-YGLEITSLAPFSNNLLSPDEEEREEALEELKRAIELAKE 95 (274)
T ss_pred HHHHHHHhCCCeEecCCc---ccCCchhhhHHHHHHHHHH-cCcEEEeecccCCCcCCCchhhHHHHHHHHHHHHHHHHH
Confidence 445566778999999861 111211 124555444443 3445544332 111 2344556
Q ss_pred cCCCEEEEecCCchHHHHh-hhcCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHHCCc
Q 018252 213 AGAKEVAIFASASEAFSKS-NINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGC 291 (359)
Q Consensus 213 aGv~~V~i~~s~S~~~~~~-n~~~t~~e~l~~i~~~i~~Ak~~G~~V~~~is~~fg~~~~~r~~~e~l~~~a~~l~~~Ga 291 (359)
.|++.+.+..+........ ......+...+.+.++.+.|++.|+.+...-.. .+.....++.. ..+.+.+.+-
T Consensus 96 lg~~~vv~~~g~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~~i~l~~e~~~---~~~~~~~~~~~---~~~~~~~~~~ 169 (274)
T COG1082 96 LGAKVVVVHPGLGAGADDPDSPEEARERWAEALEELAEIAEELGIGLALENHH---HPGNVVETGAD---ALDLLREVDS 169 (274)
T ss_pred cCCCeEEeecccCCcCCCCCCCcccHHHHHHHHHHHHHHHHHhCCceEEeecC---CccceeecCHH---HHHHHHhcCC
Confidence 7888877665432221110 011223567788888999999888876321100 01111122222 3333444433
Q ss_pred CEE-EEcCCCCCCcHHHHHHHHHHHHHhCCCceEEEEeCCCCCc
Q 018252 292 FEI-SLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQ 334 (359)
Q Consensus 292 d~I-~L~DT~G~~~P~~v~~lv~~l~~~~p~~~L~~H~HNd~GL 334 (359)
+.+ .+-|+.=...-.. +.+..+++..+ ....+|.||..+.
T Consensus 170 ~~v~~~lD~~H~~~~~~--d~~~~~~~~~~-rI~hvH~kD~~~~ 210 (274)
T COG1082 170 PNVGLLLDTGHAFFAGE--DPLEAIRKLGD-RIGHVHLKDADGP 210 (274)
T ss_pred CceEEEEecCchhhccC--CHHHHHHHhhc-ceeEEEEeecCcc
Confidence 333 3456543333323 55666666656 4788999998864
No 355
>cd04747 OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 5. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=90.36 E-value=11 Score=37.94 Aligned_cols=141 Identities=12% Similarity=-0.015 Sum_probs=86.0
Q ss_pred HHHHHHcCCCEEEEecCC--------chHHH--HhhhcCCHHHHHHHHHHHHHHHHhC-C--CcEEEEEeeeec-CCC--
Q 018252 207 FEAAIAAGAKEVAIFASA--------SEAFS--KSNINCSIEDSLVRYRAVAHAAKVL-S--IPVRGYVSCVVG-CPV-- 270 (359)
Q Consensus 207 ie~a~~aGv~~V~i~~s~--------S~~~~--~~n~~~t~~e~l~~i~~~i~~Ak~~-G--~~V~~~is~~fg-~~~-- 270 (359)
.++|.++|.|-|.+...- |+..+ ...+|-+.++-..-+.++++..|+. | +.|..-++. +. ..+
T Consensus 150 A~~a~~aGfDgVeih~ahGyLl~qFLSp~~N~RtDeYGGslenR~Rf~~eii~air~~vG~d~~v~vRis~-~~~~~~~~ 228 (361)
T cd04747 150 AADARRLGFDGIELHGAHGYLIDQFFWAGTNRRADGYGGSLAARSRFAAEVVKAIRAAVGPDFPIILRFSQ-WKQQDYTA 228 (361)
T ss_pred HHHHHHcCCCEEEEecccchHHHHhcCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHcCCCCeEEEEECc-cccccccc
Confidence 346667899988775432 22222 2235777887778888888888886 4 345555552 21 111
Q ss_pred CCCCCHHHHHHHHHHHHHCCcCEEEEcCCCC-CCcHH---HHHHHHHHHHHhCCCceEEEEeCCCCC-------------
Q 018252 271 EGAIPPSKVAYVAKELHDMGCFEISLGDTIG-VGTPG---TVVPMLEAVMAVVPVEKLAVHLHDTYG------------- 333 (359)
Q Consensus 271 ~~r~~~e~l~~~a~~l~~~Gad~I~L~DT~G-~~~P~---~v~~lv~~l~~~~p~~~L~~H~HNd~G------------- 333 (359)
.+-.++++..++++.+.++|+|-|.+.- | ...|. .-..+.+.+++.++ +++...+--+..
T Consensus 229 ~~g~~~~e~~~~~~~l~~~gvd~i~vs~--g~~~~~~~~~~~~~~~~~~k~~~~-~pv~~~G~i~~~~~~~~~~~~~~~~ 305 (361)
T cd04747 229 RLADTPDELEALLAPLVDAGVDIFHCST--RRFWEPEFEGSELNLAGWTKKLTG-LPTITVGSVGLDGDFIGAFAGDEGA 305 (361)
T ss_pred CCCCCHHHHHHHHHHHHHcCCCEEEecC--CCccCCCcCccchhHHHHHHHHcC-CCEEEECCccccccccccccccccc
Confidence 1125788999999999999999887632 2 11221 12345566777765 466665543211
Q ss_pred --cHHHHHHHHHHcC-CCEEe
Q 018252 334 --QSLPNILISLQVS-PMHAK 351 (359)
Q Consensus 334 --LAlANalaAv~AG-a~~ID 351 (359)
.....+..+++.| ||.|-
T Consensus 306 ~~~~~~~a~~~l~~g~~D~V~ 326 (361)
T cd04747 306 SPASLDRLLERLERGEFDLVA 326 (361)
T ss_pred ccCCHHHHHHHHHCCCCCeeh
Confidence 2456777888876 88764
No 356
>PRK00366 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed
Probab=90.35 E-value=16 Score=36.96 Aligned_cols=99 Identities=26% Similarity=0.248 Sum_probs=64.9
Q ss_pred CCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcCCCCCHHHHHHHhhhcCCCeEEEEeC-ChHhHHHHHHcCCCEEEEecC
Q 018252 145 VPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPVLTP-NLKGFEAAIAAGAKEVAIFAS 223 (359)
Q Consensus 145 ~~~~~k~~ia~~L~~aGv~~IEvG~fvspk~vPq~~D~~ev~~~l~~~~~~~l~~l~~-n~~gie~a~~aGv~~V~i~~s 223 (359)
-..+.-++-++.|.++|.+.|-+..+ .+.+++.+ ..+++..++.+.+=+- +.+-.-.|+++|++.+++-..
T Consensus 39 ~Dv~atv~Qi~~L~~aGceiVRvav~-------~~~~a~al-~~I~~~~~iPlvADIHFd~~lAl~a~~~G~~~iRINPG 110 (360)
T PRK00366 39 ADVEATVAQIKRLARAGCEIVRVAVP-------DMEAAAAL-PEIKKQLPVPLVADIHFDYRLALAAAEAGADALRINPG 110 (360)
T ss_pred hhHHHHHHHHHHHHHcCCCEEEEccC-------CHHHHHhH-HHHHHcCCCCEEEecCCCHHHHHHHHHhCCCEEEECCC
Confidence 34556677778899999999999873 33444443 4444333444444332 445555667789999998322
Q ss_pred CchHHHHhhhcCCHHHHHHHHHHHHHHHHhCCCcEEEEEe
Q 018252 224 ASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVS 263 (359)
Q Consensus 224 ~S~~~~~~n~~~t~~e~l~~i~~~i~~Ak~~G~~V~~~is 263 (359)
|++. .-++++++++.||++|+.+|.-+-
T Consensus 111 --------Nig~----~~~~v~~vv~~ak~~~ipIRIGvN 138 (360)
T PRK00366 111 --------NIGK----RDERVREVVEAAKDYGIPIRIGVN 138 (360)
T ss_pred --------CCCc----hHHHHHHHHHHHHHCCCCEEEecC
Confidence 4432 135678999999999999986664
No 357
>TIGR00683 nanA N-acetylneuraminate lyase. N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate.
Probab=90.31 E-value=6.6 Score=38.14 Aligned_cols=17 Identities=12% Similarity=0.085 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHCCcCE
Q 018252 277 SKVAYVAKELHDMGCFE 293 (359)
Q Consensus 277 e~l~~~a~~l~~~Gad~ 293 (359)
+..+++++.+.++|+|.
T Consensus 83 ~~~i~la~~a~~~Gad~ 99 (290)
T TIGR00683 83 KEAVELGKYATELGYDC 99 (290)
T ss_pred HHHHHHHHHHHHhCCCE
Confidence 34444444444444443
No 358
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=90.23 E-value=2.2 Score=41.49 Aligned_cols=79 Identities=9% Similarity=0.011 Sum_probs=63.7
Q ss_pred CCCCHHHHHHHHHHHHHCCcCEEEEcCCCCC---CcHHHHHHHHHHHHHhCCC-ceEEEEeCCCCCcHHHHHHHHHHcCC
Q 018252 272 GAIPPSKVAYVAKELHDMGCFEISLGDTIGV---GTPGTVVPMLEAVMAVVPV-EKLAVHLHDTYGQSLPNILISLQVSP 347 (359)
Q Consensus 272 ~r~~~e~l~~~a~~l~~~Gad~I~L~DT~G~---~~P~~v~~lv~~l~~~~p~-~~L~~H~HNd~GLAlANalaAv~AGa 347 (359)
+..|.+-+.++++.+.+.|++-|.+.-|.|= ++.++-.++++.+++...+ +++-+|.=.+..-++.-+..|.++||
T Consensus 21 g~iD~~~l~~li~~l~~~Gv~gi~v~GstGE~~~Lt~eEr~~v~~~~~~~~~g~~pvi~gv~~~t~~ai~~a~~a~~~Ga 100 (296)
T TIGR03249 21 GSFDEAAYRENIEWLLGYGLEALFAAGGTGEFFSLTPAEYEQVVEIAVSTAKGKVPVYTGVGGNTSDAIEIARLAEKAGA 100 (296)
T ss_pred CCcCHHHHHHHHHHHHhcCCCEEEECCCCcCcccCCHHHHHHHHHHHHHHhCCCCcEEEecCccHHHHHHHHHHHHHhCC
Confidence 5799999999999999999999999999985 5577777888877776543 55666653346677788888999999
Q ss_pred CEE
Q 018252 348 MHA 350 (359)
Q Consensus 348 ~~I 350 (359)
+.|
T Consensus 101 dav 103 (296)
T TIGR03249 101 DGY 103 (296)
T ss_pred CEE
Confidence 987
No 359
>PRK08898 coproporphyrinogen III oxidase; Provisional
Probab=90.21 E-value=7.9 Score=39.23 Aligned_cols=96 Identities=16% Similarity=0.064 Sum_probs=62.2
Q ss_pred CCCeEEEEe-C---ChHhHHHHHHcCCCEEEEec-CCchHHHHhhhcCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeec
Q 018252 193 EGARLPVLT-P---NLKGFEAAIAAGAKEVAIFA-SASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVG 267 (359)
Q Consensus 193 ~~~~l~~l~-~---n~~gie~a~~aGv~~V~i~~-s~S~~~~~~n~~~t~~e~l~~i~~~i~~Ak~~G~~V~~~is~~fg 267 (359)
++.++..-+ | +.+.++...++|+++|.+-+ +.++... ..+|+.. ..+.+.++++.+++.+..+.+.++ +|
T Consensus 107 ~~~eit~E~~p~~~~~e~L~~l~~~GvnrisiGvQS~~~~~L-~~l~R~~--~~~~~~~~i~~~~~~~~~v~~dlI--~G 181 (394)
T PRK08898 107 PDAEITLEANPGTFEAEKFAQFRASGVNRLSIGIQSFNDAHL-KALGRIH--DGAEARAAIEIAAKHFDNFNLDLM--YA 181 (394)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHcCCCeEEEecccCCHHHH-HHhCCCC--CHHHHHHHHHHHHHhCCceEEEEE--cC
Confidence 345666655 3 23668888889999999866 3344333 3344421 123455666777777777766665 88
Q ss_pred CCCCCCCCHHHHHHHHHHHHHCCcCEEEE
Q 018252 268 CPVEGAIPPSKVAYVAKELHDMGCFEISL 296 (359)
Q Consensus 268 ~~~~~r~~~e~l~~~a~~l~~~Gad~I~L 296 (359)
.|.. +.+.+.+-++.+.+++++.|++
T Consensus 182 lPgq---t~~~~~~~l~~~~~l~p~~is~ 207 (394)
T PRK08898 182 LPGQ---TLDEALADVETALAFGPPHLSL 207 (394)
T ss_pred CCCC---CHHHHHHHHHHHHhcCCCEEEE
Confidence 7754 6677777788889999987653
No 360
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=90.14 E-value=2.1 Score=41.12 Aligned_cols=81 Identities=11% Similarity=0.037 Sum_probs=67.7
Q ss_pred CCCCHHHHHHHHHHHHHCCcCEEEEcCCCC---CCcHHHHHHHHHHHHHhCC-CceEEEEeC-CCCCcHHHHHHHHHHcC
Q 018252 272 GAIPPSKVAYVAKELHDMGCFEISLGDTIG---VGTPGTVVPMLEAVMAVVP-VEKLAVHLH-DTYGQSLPNILISLQVS 346 (359)
Q Consensus 272 ~r~~~e~l~~~a~~l~~~Gad~I~L~DT~G---~~~P~~v~~lv~~l~~~~p-~~~L~~H~H-Nd~GLAlANalaAv~AG 346 (359)
+..+.+.+.+.++.+.+.|++-|.++-|+| .++.++-.++++.+.+... .++|-+|.- ++..-++.-+..|.++|
T Consensus 16 g~iD~~~~~~~i~~l~~~Gv~gl~v~GstGE~~~lt~~Er~~l~~~~~~~~~~~~~vi~gv~~~~~~~~~~~a~~a~~~G 95 (284)
T cd00950 16 GSVDFDALERLIEFQIENGTDGLVVCGTTGESPTLSDEEHEAVIEAVVEAVNGRVPVIAGTGSNNTAEAIELTKRAEKAG 95 (284)
T ss_pred CCcCHHHHHHHHHHHHHcCCCEEEECCCCcchhhCCHHHHHHHHHHHHHHhCCCCcEEeccCCccHHHHHHHHHHHHHcC
Confidence 578999999999999999999999999998 5667888888888887764 466777764 57778899999999999
Q ss_pred CCEEec
Q 018252 347 PMHAKP 352 (359)
Q Consensus 347 a~~ID~ 352 (359)
++.|=.
T Consensus 96 ~d~v~~ 101 (284)
T cd00950 96 ADAALV 101 (284)
T ss_pred CCEEEE
Confidence 998744
No 361
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=90.11 E-value=6.6 Score=37.84 Aligned_cols=98 Identities=15% Similarity=0.143 Sum_probs=50.3
Q ss_pred HHHHHHcCCCEEEEecCCchHHHHhhhcCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHH
Q 018252 207 FEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKEL 286 (359)
Q Consensus 207 ie~a~~aGv~~V~i~~s~S~~~~~~n~~~t~~e~l~~i~~~i~~Ak~~G~~V~~~is~~fg~~~~~r~~~e~l~~~a~~l 286 (359)
++..++.|++.|.+.-++.|.+ ..|.+|-.+.++.+++.++. .++|.+.+ +..+.++.+++++.+
T Consensus 25 i~~l~~~Gv~Gi~~~GstGE~~-----~Ls~~Er~~~~~~~~~~~~~-~~~vi~gv---------~~~s~~~~i~~a~~a 89 (285)
T TIGR00674 25 IDFQIENGTDAIVVVGTTGESP-----TLSHEEHKKVIEFVVDLVNG-RVPVIAGT---------GSNATEEAISLTKFA 89 (285)
T ss_pred HHHHHHcCCCEEEECccCcccc-----cCCHHHHHHHHHHHHHHhCC-CCeEEEeC---------CCccHHHHHHHHHHH
Confidence 4445556777666655555543 23455555555555554432 13332211 123456666677777
Q ss_pred HHCCcCEEEEc-CCCCCCcHHHHHHHHHHHHHhC
Q 018252 287 HDMGCFEISLG-DTIGVGTPGTVVPMLEAVMAVV 319 (359)
Q Consensus 287 ~~~Gad~I~L~-DT~G~~~P~~v~~lv~~l~~~~ 319 (359)
.++|+|.|.+. =.....+++++.+.++.+.+..
T Consensus 90 ~~~Gad~v~v~pP~y~~~~~~~i~~~~~~i~~~~ 123 (285)
T TIGR00674 90 EDVGADGFLVVTPYYNKPTQEGLYQHFKAIAEEV 123 (285)
T ss_pred HHcCCCEEEEcCCcCCCCCHHHHHHHHHHHHhcC
Confidence 77777654432 2222334566666666666554
No 362
>PRK07360 FO synthase subunit 2; Reviewed
Probab=90.11 E-value=1.2 Score=44.79 Aligned_cols=81 Identities=15% Similarity=0.096 Sum_probs=57.8
Q ss_pred CCCHHHHHHHHHHHHHCCcCEEEEcCCCCCCc--HHHHHHHHHHHHHhCCCceEEE-------EeCCCCCcHHHHHHHH-
Q 018252 273 AIPPSKVAYVAKELHDMGCFEISLGDTIGVGT--PGTVVPMLEAVMAVVPVEKLAV-------HLHDTYGQSLPNILIS- 342 (359)
Q Consensus 273 r~~~e~l~~~a~~l~~~Gad~I~L~DT~G~~~--P~~v~~lv~~l~~~~p~~~L~~-------H~HNd~GLAlANalaA- 342 (359)
..+++++.+.++++.+.|+.+|.|.--.+... ++.+.++++.+++.+|++.+.. |.-++.|+..-..+..
T Consensus 90 ~ls~eeI~~~a~~a~~~G~~~i~l~~G~~p~~~~~e~~~~~i~~ik~~~~~i~i~a~s~~ei~~~~~~~G~~~~e~l~~L 169 (371)
T PRK07360 90 WLTIAEILEKAAEAVKRGATEVCIQGGLHPAADSLEFYLEILEAIKEEFPDIHLHAFSPMEVYFAAREDGLSYEEVLKAL 169 (371)
T ss_pred eCCHHHHHHHHHHHHhCCCCEEEEccCCCCCCCcHHHHHHHHHHHHHhCCCcceeeCCHHHHHHHHhhcCCCHHHHHHHH
Confidence 46999999999999999999999993212222 4567889999998887533321 2234778887765444
Q ss_pred HHcCCCEEece
Q 018252 343 LQVSPMHAKPC 353 (359)
Q Consensus 343 v~AGa~~ID~t 353 (359)
.+||++.+..|
T Consensus 170 keAGld~~~~t 180 (371)
T PRK07360 170 KDAGLDSMPGT 180 (371)
T ss_pred HHcCCCcCCCc
Confidence 46999998644
No 363
>TIGR02319 CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phosphorylmutase. This family consists of carboxyvinyl-carboxyphosphonate phosphorylmutase (CPEP phosphonomutase), an unusual enzyme involved in the biosynthesis of the antibiotic bialaphos. So far, it is known only in that pathway and only in Streptomyces hygroscopicus. Some related proteins annotated as being functionally equivalent are likely misannotated examples of methylisocitrate lyase, an enzyme of priopionate utilization.
Probab=90.11 E-value=5.3 Score=39.26 Aligned_cols=133 Identities=12% Similarity=0.123 Sum_probs=81.8
Q ss_pred HHHHHcCCCEEEEec-CCchH-HHHhhhc-CCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHH
Q 018252 208 EAAIAAGAKEVAIFA-SASEA-FSKSNIN-CSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAK 284 (359)
Q Consensus 208 e~a~~aGv~~V~i~~-s~S~~-~~~~n~~-~t~~e~l~~i~~~i~~Ak~~G~~V~~~is~~fg~~~~~r~~~e~l~~~a~ 284 (359)
..+-.+|.+-+.+.- .++-. +-.--.+ .+.+|.++.++++++. ..++|.+.+-.-|| -++ .+...++
T Consensus 30 rl~e~aGf~ai~~sg~~~~as~lG~pD~g~l~~~e~~~~~~~I~~~---~~lPv~aD~dtGyG------~~~-~v~r~V~ 99 (294)
T TIGR02319 30 KVIQQAGFPAVHMTGSGTSASMLGLPDLGFTSVSEQAINAKNIVLA---VDVPVIMDADAGYG------NAM-SVWRATR 99 (294)
T ss_pred HHHHHcCCCEEEecHHHHHHHHcCCCCcCCCCHHHHHHHHHHHHhc---cCCCEEEECCCCCC------CcH-HHHHHHH
Confidence 444457888776521 11111 1111112 4677887777766654 35777655543333 233 4788999
Q ss_pred HHHHCCcCEEEEcCCCC-----------CCcHHHHHHHHHHHHHhC--CCceEEEE----eCCCCCcHHHHHHHHHHcCC
Q 018252 285 ELHDMGCFEISLGDTIG-----------VGTPGTVVPMLEAVMAVV--PVEKLAVH----LHDTYGQSLPNILISLQVSP 347 (359)
Q Consensus 285 ~l~~~Gad~I~L~DT~G-----------~~~P~~v~~lv~~l~~~~--p~~~L~~H----~HNd~GLAlANalaAv~AGa 347 (359)
++.++|+--|.|-|.++ +..++++.+-|++.++.. ++.-|-.- ....+--++.-+.+-.+|||
T Consensus 100 ~~~~aGaagi~IEDq~~pK~cg~~~~k~lv~~ee~~~kI~Aa~~A~~~~d~~I~ARTDa~~~~g~deaI~Ra~aY~eAGA 179 (294)
T TIGR02319 100 EFERVGIVGYHLEDQVNPKRCGHLEGKRLISTEEMTGKIEAAVEAREDEDFTIIARTDARESFGLDEAIRRSREYVAAGA 179 (294)
T ss_pred HHHHcCCeEEEEECCCCccccCCCCCccccCHHHHHHHHHHHHHhccCCCeEEEEEecccccCCHHHHHHHHHHHHHhCC
Confidence 99999999999999864 345677777777777643 22222111 12234467888899999999
Q ss_pred CEE
Q 018252 348 MHA 350 (359)
Q Consensus 348 ~~I 350 (359)
|.|
T Consensus 180 D~i 182 (294)
T TIGR02319 180 DCI 182 (294)
T ss_pred CEE
Confidence 976
No 364
>PRK06354 pyruvate kinase; Provisional
Probab=90.07 E-value=25 Score=37.97 Aligned_cols=158 Identities=11% Similarity=0.125 Sum_probs=98.2
Q ss_pred CCCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcCCCCCHHHHHHHhhh--cCCCeEEEEeCChHhHHH---HHHcCCCEE
Q 018252 144 TVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRD--LEGARLPVLTPNLKGFEA---AIAAGAKEV 218 (359)
Q Consensus 144 ~~~~~~k~~ia~~L~~aGv~~IEvG~fvspk~vPq~~D~~ev~~~l~~--~~~~~l~~l~~n~~gie~---a~~aGv~~V 218 (359)
.++..++.. ++.-.+.|+|.|-+.| +.. ..|-.++.+.+.+ ..++.+.+-+.+.+++++ .++. +|.|
T Consensus 175 ~ltekD~~d-i~f~~~~~vD~ia~SF-Vr~-----~~dv~~~r~~l~~~~~~~~~iiaKIEt~eav~nldeI~~~-~DgI 246 (590)
T PRK06354 175 AITEKDRED-LIFGLEQGVDWIALSF-VRN-----PSDVLEIRELIEEHNGKHIPIIAKIEKQEAIDNIDAILEL-CDGL 246 (590)
T ss_pred CCCHHHHHH-HHHHHHcCCCEEEEcC-CCC-----HHHHHHHHHHHHHhcCCCceEEEEECCHHHHHhHHHHHHh-cCEE
Confidence 355666665 4677899999997765 331 1355556666633 345666666767665554 3333 5655
Q ss_pred EEecCCchHHHHhhhcCCHHHHHHHHHHHHHHHHhCCCcEEEE--Eeee-ecCCCCCCCCHHHHHHHHHHHHHCCcCEEE
Q 018252 219 AIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGY--VSCV-VGCPVEGAIPPSKVAYVAKELHDMGCFEIS 295 (359)
Q Consensus 219 ~i~~s~S~~~~~~n~~~t~~e~l~~i~~~i~~Ak~~G~~V~~~--is~~-fg~~~~~r~~~e~l~~~a~~l~~~Gad~I~ 295 (359)
.+ .-.|+-. -...++.....+++++.|+++|..|... +... ..+| +-+..++.+++.++.+ |+|.|.
T Consensus 247 mV--aRGDLgv----e~g~e~v~~~qk~ii~~~~~~gkpvI~ATqmLeSM~~~p---~PTRAEvsDVaNav~D-G~DavM 316 (590)
T PRK06354 247 MV--ARGDLGV----EIPAEEVPLLQKRLIKKANRLGKPVITATQMLDSMQRNP---RPTRAEASDVANAILD-GTDAVM 316 (590)
T ss_pred EE--ccchhhc----ccCcHHHHHHHHHHHHHHHHcCCCEEEEchhHHHHhhCC---CCCchhhHHHHHHhhh-CCcEEE
Confidence 44 2222211 1224566667789999999999987321 1100 1122 3355577788887776 999999
Q ss_pred Ec-CCCCCCcHHHHHHHHHHHHHhC
Q 018252 296 LG-DTIGVGTPGTVVPMLEAVMAVV 319 (359)
Q Consensus 296 L~-DT~G~~~P~~v~~lv~~l~~~~ 319 (359)
|. -|+=-..|.+..+.+..+.+..
T Consensus 317 LS~ETA~G~yPveaV~~m~~I~~~a 341 (590)
T PRK06354 317 LSNETAAGDYPVEAVQTMATIAVRI 341 (590)
T ss_pred ecccccCCCCHHHHHHHHHHHHHHH
Confidence 96 5666678998888888777643
No 365
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=90.06 E-value=9.5 Score=35.83 Aligned_cols=166 Identities=12% Similarity=0.043 Sum_probs=83.9
Q ss_pred HHHHHHHHHhCCCCEEEEeccCCCCCcCCCCCHHHHHHHhhhcCCCeEEEE----------------eCC-----hHhH-
Q 018252 150 KVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPVL----------------TPN-----LKGF- 207 (359)
Q Consensus 150 k~~ia~~L~~aGv~~IEvG~fvspk~vPq~~D~~ev~~~l~~~~~~~l~~l----------------~~n-----~~gi- 207 (359)
-.+.++.+.++|++.||++.+. ..+.+++.+.+++ .+.+++.. .+. .+.+
T Consensus 17 l~~~l~~~a~~Gf~~VEl~~~~-------~~~~~~~~~~l~~-~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (258)
T PRK09997 17 FLARFEKAAQCGFRGVEFMFPY-------DYDIEELKQVLAS-NKLEHTLHNLPAGDWAAGERGIACIPGREEEFRDGVA 88 (258)
T ss_pred HHHHHHHHHHhCCCEEEEcCCC-------CCCHHHHHHHHHH-cCCcEEEEcCCCCccccCcCccccCCCcHHHHHHHHH
Confidence 4456788999999999997521 2466777777653 23333321 110 1123
Q ss_pred ---HHHHHcCCCEEEEecCCchHHHHhhhcCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHH
Q 018252 208 ---EAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAK 284 (359)
Q Consensus 208 ---e~a~~aGv~~V~i~~s~S~~~~~~n~~~t~~e~l~~i~~~i~~Ak~~G~~V~~~is~~fg~~~~~r~~~e~l~~~a~ 284 (359)
+.|.+.|++.|.++....+.. .......+...+.+.++.++|++.|+.+...-..-+..+...-.+++...++++
T Consensus 89 ~~i~~a~~lga~~i~~~~g~~~~~--~~~~~~~~~~~~~l~~l~~~a~~~Gv~l~lE~~n~~~~~~~~~~~~~~~~~ll~ 166 (258)
T PRK09997 89 AAIRYARALGNKKINCLVGKTPAG--FSSEQIHATLVENLRYAANMLMKEDILLLIEPINHFDIPGFHLTGTRQALKLID 166 (258)
T ss_pred HHHHHHHHhCCCEEEECCCCCCCC--CCHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeCCCcCCCCCccCCHHHHHHHHH
Confidence 345567999887754311000 000011234556778888999999987633210001111111246666666665
Q ss_pred HHHHCCcCEEE-EcCCCCCCcH-HHHHHHHHHHHHhCCCceEEEEeCCCC
Q 018252 285 ELHDMGCFEIS-LGDTIGVGTP-GTVVPMLEAVMAVVPVEKLAVHLHDTY 332 (359)
Q Consensus 285 ~l~~~Gad~I~-L~DT~G~~~P-~~v~~lv~~l~~~~p~~~L~~H~HNd~ 332 (359)
.+ +.+.|. +-|+.=.... .++.+.+ +. +++....+|.+|..
T Consensus 167 ~v---~~~~v~l~~D~~h~~~~g~~~~~~~---~~-~~~ri~~vHikD~~ 209 (258)
T PRK09997 167 DV---GCCNLKIQYDIYHMQRMEGELTNTM---TQ-WADKIGHLQIADNP 209 (258)
T ss_pred Hh---CCCCEEEEeEHHHhhhcCCcHHHHH---HH-hhCcccEEEeCCCC
Confidence 44 334333 3455322211 1222333 32 23345788999853
No 366
>TIGR00683 nanA N-acetylneuraminate lyase. N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate.
Probab=90.06 E-value=2.3 Score=41.26 Aligned_cols=81 Identities=7% Similarity=-0.007 Sum_probs=69.8
Q ss_pred CCCCHHHHHHHHHHHHHCC-cCEEEEcCCCCC---CcHHHHHHHHHHHHHhCC-CceEEEEe-CCCCCcHHHHHHHHHHc
Q 018252 272 GAIPPSKVAYVAKELHDMG-CFEISLGDTIGV---GTPGTVVPMLEAVMAVVP-VEKLAVHL-HDTYGQSLPNILISLQV 345 (359)
Q Consensus 272 ~r~~~e~l~~~a~~l~~~G-ad~I~L~DT~G~---~~P~~v~~lv~~l~~~~p-~~~L~~H~-HNd~GLAlANalaAv~A 345 (359)
+..+.+.+.+.++.+.+.| ++-|.+.-|.|= +++++-.++++.+.+... .++|-+|. |++.--++.-+..|.++
T Consensus 16 g~iD~~~~~~~i~~~i~~G~v~gi~~~GstGE~~~Lt~eEr~~~~~~~~~~~~~~~pvi~gv~~~~t~~~i~la~~a~~~ 95 (290)
T TIGR00683 16 GTINEKGLRQIIRHNIDKMKVDGLYVGGSTGENFMLSTEEKKEIFRIAKDEAKDQIALIAQVGSVNLKEAVELGKYATEL 95 (290)
T ss_pred CCcCHHHHHHHHHHHHhCCCcCEEEECCcccccccCCHHHHHHHHHHHHHHhCCCCcEEEecCCCCHHHHHHHHHHHHHh
Confidence 5799999999999999999 999999999885 678888888888887764 36788884 78888889999999999
Q ss_pred CCCEEec
Q 018252 346 SPMHAKP 352 (359)
Q Consensus 346 Ga~~ID~ 352 (359)
||+.|=+
T Consensus 96 Gad~v~v 102 (290)
T TIGR00683 96 GYDCLSA 102 (290)
T ss_pred CCCEEEE
Confidence 9998755
No 367
>PF00809 Pterin_bind: Pterin binding enzyme This Prosite entry is a subset of the Pfam family; InterPro: IPR000489 The ~250-residue pterin-binding domain has been shown to adopt a (beta/alpha)8 barrel fold, which has the overall shape of a distorted cylinder. It has eight alpha-helices stacked around the outside of an inner cylinder of parallel beta-strands. The pterin ring binds at the bottom of the (beta/alpha;)8 barrel in a polar cup-like region that is relatively solvent exposed and fairly negatively charged. The pterin ring is partially buried within the (beta/alpha)8 barrel. The pterin binding residues are highly conserved and include aspartate and asparagine residues located at the C terminus of the beta-strands of the barrel, which are predicted to form hydrogen bonds with the nitrogen and oxygen atoms of the pterin ring [, , ]. Some proteins known to contain a pterin-binding domain are listed below: Prokaryotic and eukaryotic B12-dependent methionine synthase (MetH) (2.1.1.13 from EC), a large, modular protein that catalyzes the transfer of a methyl group from methyltetrahydrofolate (CH3-H4folate) to Hcy to form methionine, using cobalamin as an intermediate methyl carrier. Prokaryotic and eukaryotic dihydropteroate synthase (DHPS) (2.5.1.15 from EC). It catalyzes the condensation of para-aminobenzoic acid (pABA) with 7,8- dihydropterin-pyrophosphate (DHPPP), eliminating pyrophosphate to form 7,8- dihydropteroate which is subsequently converted to tetrahydrofolate. Moorella thermoacetica 5-methyltetrahydrofolate corrinoid/iron sulphur protein methyltransferase (MeTr). It transfers the N5-methyl group from CH3-H4folate to a cob(I)amide centre in another protein, the corrinoid iron sulphur protein. ; GO: 0042558 pteridine-containing compound metabolic process; PDB: 2VP8_B 2BMB_A 2Y5S_B 2Y5J_A 3BOF_B 1Q7Q_B 1Q85_B 1Q7Z_A 1Q7M_A 1Q8A_B ....
Probab=89.98 E-value=3.4 Score=38.23 Aligned_cols=157 Identities=18% Similarity=0.187 Sum_probs=88.4
Q ss_pred CCCCCHHHHHHHHHHHHhCCCCEEEEecc-CCCCCcCC--CCCHHHHHHHhhhc----CCCeEEEEeCChHhHHHHHHcC
Q 018252 142 KNTVPTGVKVELIRRLVSSGLPVVEATSF-VSPKWVPQ--LADARDVMEAVRDL----EGARLPVLTPNLKGFEAAIAAG 214 (359)
Q Consensus 142 ~~~~~~~~k~~ia~~L~~aGv~~IEvG~f-vspk~vPq--~~D~~ev~~~l~~~----~~~~l~~l~~n~~gie~a~~aG 214 (359)
+..++.+..++-++.+.+.|.++|++|.- ..|..-+. -.+.+.+...++.. .++.++.=+.+.+-++.|++.|
T Consensus 13 ~~~~~~~~a~~~a~~~~~~GAdiIDIg~~st~p~~~~v~~~eE~~rl~~~l~~i~~~~~~~plSIDT~~~~v~~~aL~~g 92 (210)
T PF00809_consen 13 GRKFSEDEAVKRAREQVEAGADIIDIGAESTRPGATPVSEEEEMERLVPVLQAIREENPDVPLSIDTFNPEVAEAALKAG 92 (210)
T ss_dssp TCHHHHHHHHHHHHHHHHTT-SEEEEESSTSSTTSSSSHHHHHHHHHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHT
T ss_pred CcccCHHHHHHHHHHHHHhcCCEEEecccccCCCCCcCCHHHHHHHHHHHHHHHhccCCCeEEEEECCCHHHHHHHHHcC
Confidence 45566677777799999999999999963 34432111 11222333344432 4777777778889999999999
Q ss_pred CCEEEEecCCchHHHHhhhcCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHH----HHHHHHHHH----
Q 018252 215 AKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPS----KVAYVAKEL---- 286 (359)
Q Consensus 215 v~~V~i~~s~S~~~~~~n~~~t~~e~l~~i~~~i~~Ak~~G~~V~~~is~~fg~~~~~r~~~e----~l~~~a~~l---- 286 (359)
++.|.=.....+ ..++++.++++|..+.+ ++.-+.+..-..+++ .+.++.+.+
T Consensus 93 ~~~ind~~~~~~-----------------~~~~~~l~a~~~~~vV~--m~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~i 153 (210)
T PF00809_consen 93 ADIINDISGFED-----------------DPEMLPLAAEYGAPVVL--MHSDGNPKGMPETADYRLDIAEEIIEFLEERI 153 (210)
T ss_dssp SSEEEETTTTSS-----------------STTHHHHHHHHTSEEEE--ESESSETTTTTSSHHHSHSHHHHHHHHHHHHH
T ss_pred cceEEecccccc-----------------cchhhhhhhcCCCEEEE--EecccccccccccchhhhhHHHHHHHHHHHHH
Confidence 987665433211 12556677788886532 322222322222333 233333333
Q ss_pred ---HHCCc--CEEEEcCCCCCCc-HHHHHHHHHHHHH
Q 018252 287 ---HDMGC--FEISLGDTIGVGT-PGTVVPMLEAVMA 317 (359)
Q Consensus 287 ---~~~Ga--d~I~L~DT~G~~~-P~~v~~lv~~l~~ 317 (359)
.++|+ +.|.|==-+|... +.+-.++++.++.
T Consensus 154 ~~l~~~Gi~~~~Ii~DPgigf~~~~~~~~~~l~~i~~ 190 (210)
T PF00809_consen 154 EALEKAGIPRERIILDPGIGFGKDPEQNLELLRNIEE 190 (210)
T ss_dssp HHHHHTT--GGGEEEETTTTSSTTHHHHHHHHHTHHH
T ss_pred HHHHHcCCCHHHEeeccccCcCCCHHHHHHHHHHHHH
Confidence 44898 6777655556532 4555555555443
No 368
>PRK09196 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=89.96 E-value=4.5 Score=40.65 Aligned_cols=101 Identities=10% Similarity=0.036 Sum_probs=73.0
Q ss_pred HHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHHCCcC-EEEEcCCCC-CCcHHHHHHHHHHHHHhCC
Q 018252 243 RYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCF-EISLGDTIG-VGTPGTVVPMLEAVMAVVP 320 (359)
Q Consensus 243 ~i~~~i~~Ak~~G~~V~~~is~~fg~~~~~r~~~e~l~~~a~~l~~~Gad-~I~L~DT~G-~~~P~~v~~lv~~l~~~~p 320 (359)
.++++++.|++.++-|- +|.+ ++.+.+..+++.+.+.+.. .|.+..... .+....+..++..+.+..+
T Consensus 5 ~~k~lL~~A~~~~yAVg-----AfN~-----~n~e~~~avi~AAee~~sPvIiq~s~~~~~~~g~~~~~~~~~~~a~~~~ 74 (347)
T PRK09196 5 SLRQLLDHAAEHGYGVP-----AFNV-----NNLEQVQAIMEAADETDSPVILQASAGARKYAGEPFLRHLILAAVEEYP 74 (347)
T ss_pred cHHHHHHHHHHcCceEE-----Eeee-----CCHHHHHHHHHHHHHhCCCEEEECCccHhhhCCHHHHHHHHHHHHHhCC
Confidence 35678899999999763 3543 5888999999999998876 455554433 3334567788888877776
Q ss_pred CceEEEEeCCCCCcHHHHHHHHHHcCCCE--Eeceee
Q 018252 321 VEKLAVHLHDTYGQSLPNILISLQVSPMH--AKPCFT 355 (359)
Q Consensus 321 ~~~L~~H~HNd~GLAlANalaAv~AGa~~--ID~tl~ 355 (359)
.+|+.+|. |-|.....+..|+++|.+- ||+|-+
T Consensus 75 ~VPValHL--DHg~~~e~i~~ai~~GftSVMiDgS~l 109 (347)
T PRK09196 75 HIPVVMHQ--DHGNSPATCQRAIQLGFTSVMMDGSLK 109 (347)
T ss_pred CCcEEEEC--CCCCCHHHHHHHHHcCCCEEEecCCCC
Confidence 56777665 6677888999999999874 455543
No 369
>cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa. Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings.
Probab=89.93 E-value=5.1 Score=39.13 Aligned_cols=64 Identities=16% Similarity=-0.007 Sum_probs=51.3
Q ss_pred HHHHHHHHHCCcCEEEEcCCCCCCcHHHHHHHHHHHHHhCCCceEEEEeCCCCCcHHHHHHHHHHcCCCEEecee
Q 018252 280 AYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQVSPMHAKPCF 354 (359)
Q Consensus 280 ~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~lv~~l~~~~p~~~L~~H~HNd~GLAlANalaAv~AGa~~ID~tl 354 (359)
..-++.+.++|+|.| |-.....| ..+++..+|+.+ ++++-.-+- -+..++.|+++|++.|-+|+
T Consensus 77 ~~Ea~~L~eaGvDiI---DaT~r~rP--~~~~~~~iK~~~-~~l~MAD~s-----tleEal~a~~~Gad~I~TTl 140 (283)
T cd04727 77 FVEAQILEALGVDMI---DESEVLTP--ADEEHHIDKHKF-KVPFVCGAR-----NLGEALRRISEGAAMIRTKG 140 (283)
T ss_pred HHHHHHHHHcCCCEE---eccCCCCc--HHHHHHHHHHHc-CCcEEccCC-----CHHHHHHHHHCCCCEEEecC
Confidence 566788999999999 87777788 688999999987 445543332 26788999999999999997
No 370
>PF03740 PdxJ: Pyridoxal phosphate biosynthesis protein PdxJ; InterPro: IPR004569 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. In Escherichia coli, the pdx genes involved in vitamin B6 have been characterised [, , ]. This entry represents PdxJ, which catalyses the condensation of 1-amino-3-oxo-4-(phosphohydroxy)propan-2-one and 1-deoxy-D-xylulose-5-phosphate to form pyridoxine-5'-phosphate. The product of the PdxJ reaction is then oxidized by PdxH to pyridoxal 5'-phosphate.; GO: 0008615 pyridoxine biosynthetic process, 0005737 cytoplasm; PDB: 3F4N_B 3O6D_A 3O6C_A 1M5W_G 1IXQ_D 1IXP_B 1IXN_A 1HO4_C 1HO1_A 1IXO_D ....
Probab=89.92 E-value=1.6 Score=41.65 Aligned_cols=64 Identities=27% Similarity=0.402 Sum_probs=42.2
Q ss_pred CCCeEEEEe-CChHhHHHHHHcCCCEEEEecCCchHHHHhhhcCC-HH-HHHHHHHHHHHHHHhCCCcEE
Q 018252 193 EGARLPVLT-PNLKGFEAAIAAGAKEVAIFASASEAFSKSNINCS-IE-DSLVRYRAVAHAAKVLSIPVR 259 (359)
Q Consensus 193 ~~~~l~~l~-~n~~gie~a~~aGv~~V~i~~s~S~~~~~~n~~~t-~~-e~l~~i~~~i~~Ak~~G~~V~ 259 (359)
.+++++.++ |+.++++.|.+.|++.|-+++. .+....-... .+ +.++++..+.++|+++|+.|.
T Consensus 123 ~gIrvSLFiDP~~~qi~~A~~~Gad~VELhTG---~yA~a~~~~~~~~~ell~~l~~aa~~a~~lGL~Vn 189 (239)
T PF03740_consen 123 AGIRVSLFIDPDPEQIEAAKELGADRVELHTG---PYANAFDDAEEAEEELLERLRDAARYAHELGLGVN 189 (239)
T ss_dssp TT-EEEEEE-S-HHHHHHHHHTT-SEEEEETH---HHHHHSSHHHHHHHHHHHHHHHHHHHHHHTT-EEE
T ss_pred CCCEEEEEeCCCHHHHHHHHHcCCCEEEEehh---HhhhhcCCHHHHHHHHHHHHHHHHHHHHHcCCEEe
Confidence 466676666 4668899999999999999864 2322211111 12 336999999999999999884
No 371
>PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=89.92 E-value=4.7 Score=39.43 Aligned_cols=95 Identities=12% Similarity=0.075 Sum_probs=68.3
Q ss_pred HHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHHCCcCE-EEEcCC-CCCCcHHHHHHHHHHHHHhCC
Q 018252 243 RYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFE-ISLGDT-IGVGTPGTVVPMLEAVMAVVP 320 (359)
Q Consensus 243 ~i~~~i~~Ak~~G~~V~~~is~~fg~~~~~r~~~e~l~~~a~~l~~~Gad~-I~L~DT-~G~~~P~~v~~lv~~l~~~~p 320 (359)
.++++++.|++.|+-|- +|.+ ++.+.+..+++.+.+.+... |.+.-. ...+....+..++..+.++.+
T Consensus 5 ~~~~~l~~A~~~~yaV~-----AfN~-----~n~e~~~avi~AAee~~sPvIiq~~~~~~~~~g~~~~~~~~~~~a~~~~ 74 (284)
T PRK12737 5 STKNMLKKAQAEGYAVP-----AFNI-----HNLETLQVVVETAAELRSPVILAGTPGTFSYAGTDYIVAIAEVAARKYN 74 (284)
T ss_pred cHHHHHHHHHHcCceEE-----EEEe-----CCHHHHHHHHHHHHHhCCCEEEEcCccHHhhCCHHHHHHHHHHHHHHCC
Confidence 35678899999999763 3433 47789999999999988764 444332 223344567777777777765
Q ss_pred CceEEEEeCCCCCcHHHHHHHHHHcCCCEE
Q 018252 321 VEKLAVHLHDTYGQSLPNILISLQVSPMHA 350 (359)
Q Consensus 321 ~~~L~~H~HNd~GLAlANalaAv~AGa~~I 350 (359)
+|+.+|. |-|.-...+..|+++|.+-|
T Consensus 75 -VPValHL--DH~~~~e~i~~ai~~GftSV 101 (284)
T PRK12737 75 -IPLALHL--DHHEDLDDIKKKVRAGIRSV 101 (284)
T ss_pred -CCEEEEC--CCCCCHHHHHHHHHcCCCeE
Confidence 5777654 77778999999999998743
No 372
>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene [].; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.
Probab=89.91 E-value=1.4 Score=40.72 Aligned_cols=69 Identities=13% Similarity=0.152 Sum_probs=49.1
Q ss_pred HHHHHHHHCCcCEEEEcCCCCCCcHHHHHHHHHHHHHhCCCceEEEEeCCCCCcHHHHHHHHHHcCCCEEeceeeecc
Q 018252 281 YVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQVSPMHAKPCFTFAY 358 (359)
Q Consensus 281 ~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~lv~~l~~~~p~~~L~~H~HNd~GLAlANalaAv~AGa~~ID~tl~~~~ 358 (359)
+-++++.++|++.|.| |-.....|..+.++++.+++.+ ..+-.-+- -+..++.|.++|+|.|-+| +.+|
T Consensus 55 ~ev~~l~~aGadIIAl-DaT~R~Rp~~l~~li~~i~~~~--~l~MADis-----t~ee~~~A~~~G~D~I~TT-LsGY 123 (192)
T PF04131_consen 55 KEVDALAEAGADIIAL-DATDRPRPETLEELIREIKEKY--QLVMADIS-----TLEEAINAAELGFDIIGTT-LSGY 123 (192)
T ss_dssp HHHHHHHHCT-SEEEE-E-SSSS-SS-HHHHHHHHHHCT--SEEEEE-S-----SHHHHHHHHHTT-SEEE-T-TTTS
T ss_pred HHHHHHHHcCCCEEEE-ecCCCCCCcCHHHHHHHHHHhC--cEEeeecC-----CHHHHHHHHHcCCCEEEcc-cccC
Confidence 5567788899999996 7777888899999999999987 33333332 2689999999999999998 5555
No 373
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=89.88 E-value=7.7 Score=38.44 Aligned_cols=129 Identities=18% Similarity=0.176 Sum_probs=73.6
Q ss_pred HHHHHHHHHHHhCCCCEEEEec-cCCCCCcCCCCCHHHHHHHhhh-cCCCeEEE-EeCChHhHHHHHHcCCCEEEEec-C
Q 018252 148 GVKVELIRRLVSSGLPVVEATS-FVSPKWVPQLADARDVMEAVRD-LEGARLPV-LTPNLKGFEAAIAAGAKEVAIFA-S 223 (359)
Q Consensus 148 ~~k~~ia~~L~~aGv~~IEvG~-fvspk~vPq~~D~~ev~~~l~~-~~~~~l~~-l~~n~~gie~a~~aGv~~V~i~~-s 223 (359)
++..+.++.|.++|++.|++-+ ..++ ....+.++.+++ .|++.+.+ -+.+.++.+.+.++|+|-|.+-. +
T Consensus 93 ~~~~~~~~~l~eagv~~I~vd~~~G~~------~~~~~~i~~ik~~~p~v~Vi~G~v~t~~~A~~l~~aGaD~I~vg~g~ 166 (325)
T cd00381 93 EDDKERAEALVEAGVDVIVIDSAHGHS------VYVIEMIKFIKKKYPNVDVIAGNVVTAEAARDLIDAGADGVKVGIGP 166 (325)
T ss_pred hhHHHHHHHHHhcCCCEEEEECCCCCc------HHHHHHHHHHHHHCCCceEEECCCCCHHHHHHHHhcCCCEEEECCCC
Confidence 4557788899999999999864 2221 123344455554 34444433 33466888999999999887632 1
Q ss_pred CchHHHHhhhcCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHHCCcCEEEE
Q 018252 224 ASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISL 296 (359)
Q Consensus 224 ~S~~~~~~n~~~t~~e~l~~i~~~i~~Ak~~G~~V~~~is~~fg~~~~~r~~~e~l~~~a~~l~~~Gad~I~L 296 (359)
.+.-......+.... .+..+.++.+.+++.+++|. .+++-.++.. +++.+ ++||+.+.+
T Consensus 167 G~~~~t~~~~g~g~p-~~~~i~~v~~~~~~~~vpVI---------A~GGI~~~~d---i~kAl-a~GA~~Vmi 225 (325)
T cd00381 167 GSICTTRIVTGVGVP-QATAVADVAAAARDYGVPVI---------ADGGIRTSGD---IVKAL-AAGADAVML 225 (325)
T ss_pred CcCcccceeCCCCCC-HHHHHHHHHHHHhhcCCcEE---------ecCCCCCHHH---HHHHH-HcCCCEEEe
Confidence 111001111111111 34555666677777777762 2445566655 34433 489987766
No 374
>TIGR01430 aden_deam adenosine deaminase. This family includes the experimentally verified adenosine deaminases of mammals and E. coli. Other members of this family are predicted also to be adenosine deaminase, an enzyme of nucleotide degradation. This family is distantly related to AMP deaminase.
Probab=89.87 E-value=13 Score=36.23 Aligned_cols=133 Identities=14% Similarity=0.071 Sum_probs=76.5
Q ss_pred hHHHHHHcCCCEEEEecCCchHHHHhhhcCCHHHHHHHHHHHHHHH-HhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHH
Q 018252 206 GFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAA-KVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAK 284 (359)
Q Consensus 206 gie~a~~aGv~~V~i~~s~S~~~~~~n~~~t~~e~l~~i~~~i~~A-k~~G~~V~~~is~~fg~~~~~r~~~e~l~~~a~ 284 (359)
.++.++..|+..+.+.... .. ..+.|.+.++.++.+.+.++.+ ++.|+.++.-++ +.. ..+++.+.+.++
T Consensus 77 ~~~e~~~~Gv~y~E~r~~p-~~--~~~~g~~~~~~~~~~~~~i~~a~~~~gi~~~li~~--~~r----~~~~~~~~~~~~ 147 (324)
T TIGR01430 77 YVEKAAKDGVVYAEVFFDP-QL--HTNRGISPDTVVEAVLDGLDEAERDFGIKSRLILC--GMR----HKQPEAAEETLE 147 (324)
T ss_pred HHHHHHHcCCEEEEEEeCc-cc--cccCCCCHHHHHHHHHHHHHHHHHhcCCeEEEEEE--EeC----CCCHHHHHHHHH
Confidence 4566677898766654331 11 2245678888888777776665 456776654444 211 135677777777
Q ss_pred HHHHCCcCE---EEEcCCCCCCcHHHHHHHHHHHHHhCCCceEEEEeCCCCCcHHHHHHHHH-HcCCCEEe
Q 018252 285 ELHDMGCFE---ISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISL-QVSPMHAK 351 (359)
Q Consensus 285 ~l~~~Gad~---I~L~DT~G~~~P~~v~~lv~~l~~~~p~~~L~~H~HNd~GLAlANalaAv-~AGa~~ID 351 (359)
.+.+.+.+. +.|+-.-....|..+..++...++. ++++.+|++-+.+. .+...++ +.|+++|.
T Consensus 148 ~~~~~~~~~vvg~~l~~~e~~~~~~~~~~~~~~A~~~--g~~i~~Ha~E~~~~--~~~~~~~~~~g~~ri~ 214 (324)
T TIGR01430 148 LAKPYKEQTIVGFGLAGDERGGPPPDFVRAFAIAREL--GLHLTVHAGELGGP--ESVREALDDLGATRIG 214 (324)
T ss_pred HHHhhccCcEEEecCCCCCCCCCHHHHHHHHHHHHHC--CCCeEEecCCCCCh--HHHHHHHHHcCchhcc
Confidence 766665542 2233211123366666666665553 46888898865332 2334454 67887664
No 375
>PRK05581 ribulose-phosphate 3-epimerase; Validated
Probab=89.78 E-value=15 Score=33.36 Aligned_cols=173 Identities=17% Similarity=0.120 Sum_probs=93.4
Q ss_pred CCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcCCCCCHHHHHHHhhhcCCCeE--EEEeCC-hHhHHHHHHcCCCEEEEe
Q 018252 145 VPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARL--PVLTPN-LKGFEAAIAAGAKEVAIF 221 (359)
Q Consensus 145 ~~~~~k~~ia~~L~~aGv~~IEvG~fvspk~vPq~~D~~ev~~~l~~~~~~~l--~~l~~n-~~gie~a~~aGv~~V~i~ 221 (359)
++...-.+.++.+.+.|++.|+++.-..+ .+|...-..+..+.++......+ ..++-+ .+.++.+.++|++.|.+.
T Consensus 13 ~~~~~~~~~~~~~~~~G~~~i~l~~~d~~-~~~~~~~~~~~~~~i~~~~~~~~~v~l~v~d~~~~i~~~~~~g~d~v~vh 91 (220)
T PRK05581 13 ADFARLGEEVKAVEAAGADWIHVDVMDGH-FVPNLTIGPPVVEAIRKVTKLPLDVHLMVENPDRYVPDFAKAGADIITFH 91 (220)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEeCccCC-cCCCcCcCHHHHHHHHhcCCCcEEEEeeeCCHHHHHHHHHHcCCCEEEEe
Confidence 45556778899999999999999641110 11221211222333333221222 233333 356788889999997775
Q ss_pred cCCchHHHHhhhcCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHHCCcCEEEE----c
Q 018252 222 ASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISL----G 297 (359)
Q Consensus 222 ~s~S~~~~~~n~~~t~~e~l~~i~~~i~~Ak~~G~~V~~~is~~fg~~~~~r~~~e~l~~~a~~l~~~Gad~I~L----~ 297 (359)
...++ .....++.++++|+.+...+. + .++.+.+ +.+. .++|-|.+ +
T Consensus 92 ~~~~~----------------~~~~~~~~~~~~~~~~g~~~~-----~---~t~~e~~----~~~~-~~~d~i~~~~~~~ 142 (220)
T PRK05581 92 VEASE----------------HIHRLLQLIKSAGIKAGLVLN-----P---ATPLEPL----EDVL-DLLDLVLLMSVNP 142 (220)
T ss_pred eccch----------------hHHHHHHHHHHcCCEEEEEEC-----C---CCCHHHH----HHHH-hhCCEEEEEEECC
Confidence 43221 223457788888987643221 1 1233333 2222 13554433 2
Q ss_pred CCCCCCcHHHHHHHHHHHHHhCCC----ceEEEEeCCCCCcHHHHHHHHHHcCCCEEe
Q 018252 298 DTIGVGTPGTVVPMLEAVMAVVPV----EKLAVHLHDTYGQSLPNILISLQVSPMHAK 351 (359)
Q Consensus 298 DT~G~~~P~~v~~lv~~l~~~~p~----~~L~~H~HNd~GLAlANalaAv~AGa~~ID 351 (359)
-+.|...+....+.++.+++..+. .++.+ +-|.-..|+-.+.++|++.|=
T Consensus 143 g~tg~~~~~~~~~~i~~~~~~~~~~~~~~~i~v----~GGI~~~nv~~l~~~GaD~vv 196 (220)
T PRK05581 143 GFGGQKFIPEVLEKIRELRKLIDERGLDILIEV----DGGINADNIKECAEAGADVFV 196 (220)
T ss_pred CCCcccccHHHHHHHHHHHHHHHhcCCCceEEE----ECCCCHHHHHHHHHcCCCEEE
Confidence 233333344555666666654331 12322 348888899899999998764
No 376
>PTZ00066 pyruvate kinase; Provisional
Probab=89.75 E-value=24 Score=37.43 Aligned_cols=192 Identities=11% Similarity=0.097 Sum_probs=110.9
Q ss_pred CCCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcCCCCCHHHHHHHhhhc-CCCeEEEEeCChHhHHHHHH--cCCCEEEE
Q 018252 144 TVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDL-EGARLPVLTPNLKGFEAAIA--AGAKEVAI 220 (359)
Q Consensus 144 ~~~~~~k~~ia~~L~~aGv~~IEvG~fvspk~vPq~~D~~ev~~~l~~~-~~~~l~~l~~n~~gie~a~~--aGv~~V~i 220 (359)
.++..+|..|.+...+.|+|.|=+.| +.. ..|-.+++..+.+. .++.+.+=+.+.+++++.-+ .-.|.|.+
T Consensus 206 ~ltekD~~dI~~f~~~~~vD~IalSF-Vr~-----a~DI~~~r~~l~~~g~~~~IiAKIE~~~av~NldeIl~~sDGIMV 279 (513)
T PTZ00066 206 VIGEKDKNDILNFAIPMGCDFIALSF-VQS-----ADDVRLCRQLLGERGRHIKIIPKIENIEGLINFDEILAESDGIMV 279 (513)
T ss_pred CCCHHHHHHHHHHHHhcCCCEEEECC-CCC-----HHHHHHHHHHHHhCCCCceEEEEECCHHHHHHHHHHHHhcCEEEE
Confidence 36677788777888999999986665 432 14666667777543 35666666667666554332 12244444
Q ss_pred ecCCchHHHHhhhcCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCC-CCCCCCHHHHHHHHHHHHHCCcCEEEE-cC
Q 018252 221 FASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCP-VEGAIPPSKVAYVAKELHDMGCFEISL-GD 298 (359)
Q Consensus 221 ~~s~S~~~~~~n~~~t~~e~l~~i~~~i~~Ak~~G~~V~~~is~~fg~~-~~~r~~~e~l~~~a~~l~~~Gad~I~L-~D 298 (359)
-=. ++ -+-...++....-+.+++.|+.+|.+|...= ...-.- ...+-+..++.+++.++.+ |+|.|-| +-
T Consensus 280 ARG--DL----GvEip~e~vp~~QK~II~~c~~~gkPVIvAT-QmLeSMi~np~PTRAEvsDVaNAV~D-G~DavMLSgE 351 (513)
T PTZ00066 280 ARG--DL----GMEIPPEKVFLAQKMMISKCNVAGKPVITAT-QMLESMIKNPRPTRAESTDVANAVLD-GTDCVMLSGE 351 (513)
T ss_pred Ecc--cc----ccccChHHcchHHHHHHHHHHHhCCCEEEec-hhHHHHhhCCCCchHHHHHHHHHHHh-CCcEEEecch
Confidence 210 00 0011233333334688999999999873211 000000 0113456678888888777 9999999 45
Q ss_pred CCCCCcHHHHHHHHHHHHHhCCCceEEE--E-------e-CC---CCCcHHHHHHHHHHcCCCEE
Q 018252 299 TIGVGTPGTVVPMLEAVMAVVPVEKLAV--H-------L-HD---TYGQSLPNILISLQVSPMHA 350 (359)
Q Consensus 299 T~G~~~P~~v~~lv~~l~~~~p~~~L~~--H-------~-HN---d~GLAlANalaAv~AGa~~I 350 (359)
|+=-..|.+..+.+..+..+.... +.. + . +. .-.+|.+...+|-..+|..|
T Consensus 352 TA~G~yPveaV~~m~~I~~~aE~~-~~~~~~~~~~~~~~~~~~~~~~~ia~aa~~~A~~l~a~aI 415 (513)
T PTZ00066 352 TANGKFPVEAVNIMAKICFEAETC-IDYRVLYHAIHLAVPTPVSVQEAVARSAVETAEDINAKLI 415 (513)
T ss_pred hcCCcCHHHHHHHHHHHHHHHhhc-cchHHhhhhhhccccCCCchhhHHHHHHHHHHHhCCCCEE
Confidence 666667988888887776543210 100 0 0 01 22456666677778888754
No 377
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=89.69 E-value=10 Score=41.79 Aligned_cols=136 Identities=15% Similarity=0.101 Sum_probs=81.8
Q ss_pred HHHHHcCCCEEEEecC--------CchHHHH--hhhcCCHHHHHHHHHHHHHHHHhC---CCcEEEEEeeeecCCCCCCC
Q 018252 208 EAAIAAGAKEVAIFAS--------ASEAFSK--SNINCSIEDSLVRYRAVAHAAKVL---SIPVRGYVSCVVGCPVEGAI 274 (359)
Q Consensus 208 e~a~~aGv~~V~i~~s--------~S~~~~~--~n~~~t~~e~l~~i~~~i~~Ak~~---G~~V~~~is~~fg~~~~~r~ 274 (359)
++|.++|.|-|.|... .|+..++ ..+|-+.++-+.-+.++++..|+. ++.|..-|+.. . ...+-.
T Consensus 558 ~~a~~aGfDgveih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~~ir~~~~~~~~v~~ri~~~-~-~~~~g~ 635 (765)
T PRK08255 558 RRAAEAGFDWLELHCAHGYLLSSFISPLTNQRTDEYGGSLENRLRYPLEVFRAVRAVWPAEKPMSVRISAH-D-WVEGGN 635 (765)
T ss_pred HHHHHcCCCEEEEecccchHHHHhcCCCCCCCCCCCCCCHHHHhHHHHHHHHHHHHhcCCCCeeEEEEccc-c-ccCCCC
Confidence 3556689998887644 2444433 235677777777777888877774 34455555521 1 112346
Q ss_pred CHHHHHHHHHHHHHCCcCEEEEcCCCCCCcH--------HHHHHHHHHHHHhCCCceEEEEeCCCCCcHHHHHHHHHHcC
Q 018252 275 PPSKVAYVAKELHDMGCFEISLGDTIGVGTP--------GTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQVS 346 (359)
Q Consensus 275 ~~e~l~~~a~~l~~~Gad~I~L~DT~G~~~P--------~~v~~lv~~l~~~~p~~~L~~H~HNd~GLAlANalaAv~AG 346 (359)
++++..++++.+.++|+|-|.+. .|...+ .-...+.+.+|+.+. +++..-+--+ ....+..+++.|
T Consensus 636 ~~~~~~~~~~~l~~~g~d~i~vs--~g~~~~~~~~~~~~~~~~~~~~~ik~~~~-~pv~~~G~i~---~~~~a~~~l~~g 709 (765)
T PRK08255 636 TPDDAVEIARAFKAAGADLIDVS--SGQVSKDEKPVYGRMYQTPFADRIRNEAG-IATIAVGAIS---EADHVNSIIAAG 709 (765)
T ss_pred CHHHHHHHHHHHHhcCCcEEEeC--CCCCCcCCCCCcCccccHHHHHHHHHHcC-CEEEEeCCCC---CHHHHHHHHHcC
Confidence 78889999999999999988874 222111 112345577788765 4544433221 234556777766
Q ss_pred -CCEEe
Q 018252 347 -PMHAK 351 (359)
Q Consensus 347 -a~~ID 351 (359)
||.|-
T Consensus 710 ~~D~v~ 715 (765)
T PRK08255 710 RADLCA 715 (765)
T ss_pred Ccceee
Confidence 76653
No 378
>TIGR00612 ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase. Chlamydial members of the family have a long insert. The family is largely restricted to Bacteria, where it is widely but not universally distributed. No homology can be detected between the GcpE family and other proteins.
Probab=89.67 E-value=24 Score=35.42 Aligned_cols=98 Identities=24% Similarity=0.213 Sum_probs=65.0
Q ss_pred CCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcCCCCCHHHHHHHhhhcCCCeEEEEeC-ChHhHHHHHHcCCCEEEEecC
Q 018252 145 VPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPVLTP-NLKGFEAAIAAGAKEVAIFAS 223 (359)
Q Consensus 145 ~~~~~k~~ia~~L~~aGv~~IEvG~fvspk~vPq~~D~~ev~~~l~~~~~~~l~~l~~-n~~gie~a~~aGv~~V~i~~s 223 (359)
-..+.-++-++.|.++|.+.+-+..+ .+.+++.+ ..+++.-++.+++=+- +.+-.-.+++.|++.+++-..
T Consensus 31 ~Dv~atv~QI~~L~~aGceiVRvavp-------~~~~A~al-~~I~~~~~iPlVADIHFd~~lAl~a~~~g~dkiRINPG 102 (346)
T TIGR00612 31 IDIDSTVAQIRALEEAGCDIVRVTVP-------DRESAAAF-EAIKEGTNVPLVADIHFDYRLAALAMAKGVAKVRINPG 102 (346)
T ss_pred hhHHHHHHHHHHHHHcCCCEEEEcCC-------CHHHHHhH-HHHHhCCCCCEEEeeCCCcHHHHHHHHhccCeEEECCC
Confidence 34566677788899999999999863 33444443 4444433344433332 334445567789999999332
Q ss_pred CchHHHHhhhcCCHHHHHHHHHHHHHHHHhCCCcEEEEEe
Q 018252 224 ASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVS 263 (359)
Q Consensus 224 ~S~~~~~~n~~~t~~e~l~~i~~~i~~Ak~~G~~V~~~is 263 (359)
|+|. -++++++++.||++|+.+|.-+-
T Consensus 103 --------Nig~-----~e~v~~vv~~ak~~~ipIRIGVN 129 (346)
T TIGR00612 103 --------NIGF-----RERVRDVVEKARDHGKAMRIGVN 129 (346)
T ss_pred --------CCCC-----HHHHHHHHHHHHHCCCCEEEecC
Confidence 5553 36788999999999999987664
No 379
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=89.64 E-value=6.1 Score=38.47 Aligned_cols=131 Identities=11% Similarity=0.114 Sum_probs=74.1
Q ss_pred HHcCCCEEEE--ecCCchHHHHhhhcCCHHHHHHHHHHHHHHHHhC-CCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHH
Q 018252 211 IAAGAKEVAI--FASASEAFSKSNINCSIEDSLVRYRAVAHAAKVL-SIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELH 287 (359)
Q Consensus 211 ~~aGv~~V~i--~~s~S~~~~~~n~~~t~~e~l~~i~~~i~~Ak~~-G~~V~~~is~~fg~~~~~r~~~e~l~~~a~~l~ 287 (359)
.+.|++.|.+ ..|... .....|....+..+.+.++++.+++. +++|.+-++ + +.+.+.++++.+.
T Consensus 123 ~~~gad~ielN~sCP~~~--~~~~~G~~l~~~~~~~~~iv~~v~~~~~~Pv~vKl~-----~-----~~~~~~~~a~~~~ 190 (299)
T cd02940 123 EEAGADALELNFSCPHGM--PERGMGAAVGQDPELVEEICRWVREAVKIPVIAKLT-----P-----NITDIREIARAAK 190 (299)
T ss_pred HhcCCCEEEEECCCCCCC--CCCCCchhhccCHHHHHHHHHHHHHhcCCCeEEECC-----C-----CchhHHHHHHHHH
Confidence 3458886554 444331 12222322222334556666666543 466654443 1 2346788999999
Q ss_pred HCCcCEEEEcCCCCC------------------------CcH---HHHHHHHHHHHHhCC-CceEEEEeCCCCCcHHHHH
Q 018252 288 DMGCFEISLGDTIGV------------------------GTP---GTVVPMLEAVMAVVP-VEKLAVHLHDTYGQSLPNI 339 (359)
Q Consensus 288 ~~Gad~I~L~DT~G~------------------------~~P---~~v~~lv~~l~~~~p-~~~L~~H~HNd~GLAlANa 339 (359)
++|++-|.+-.|... .-| ....+.+..+++.++ .++|-.=+==. .-.-+
T Consensus 191 ~~Gadgi~~~Nt~~~~~~id~~~~~~~~~~~~~~~~gg~sG~a~~p~~l~~v~~~~~~~~~~ipIig~GGI~---~~~da 267 (299)
T cd02940 191 EGGADGVSAINTVNSLMGVDLDGTPPAPGVEGKTTYGGYSGPAVKPIALRAVSQIARAPEPGLPISGIGGIE---SWEDA 267 (299)
T ss_pred HcCCCEEEEecccccccccccccCCccccccCCCCcCcccCCCcchHHHHHHHHHHHhcCCCCcEEEECCCC---CHHHH
Confidence 999999987766633 111 113567777887772 34444311111 12467
Q ss_pred HHHHHcCCCEEeceeee
Q 018252 340 LISLQVSPMHAKPCFTF 356 (359)
Q Consensus 340 laAv~AGa~~ID~tl~~ 356 (359)
++.+.+||+.|-.+-.+
T Consensus 268 ~~~l~aGA~~V~i~ta~ 284 (299)
T cd02940 268 AEFLLLGASVVQVCTAV 284 (299)
T ss_pred HHHHHcCCChheEceee
Confidence 77888999998866544
No 380
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional
Probab=89.62 E-value=2.6 Score=41.16 Aligned_cols=80 Identities=10% Similarity=0.018 Sum_probs=64.7
Q ss_pred CCCCHHHHHHHHHHHHHCCcCEEEEcCCCCC---CcHHHHHHHHHHHHHhCC-CceEEEEeCCCCCcHHHHHHHHHHcCC
Q 018252 272 GAIPPSKVAYVAKELHDMGCFEISLGDTIGV---GTPGTVVPMLEAVMAVVP-VEKLAVHLHDTYGQSLPNILISLQVSP 347 (359)
Q Consensus 272 ~r~~~e~l~~~a~~l~~~Gad~I~L~DT~G~---~~P~~v~~lv~~l~~~~p-~~~L~~H~HNd~GLAlANalaAv~AGa 347 (359)
+..|.+.+.++++.+.+.|++-|.+.-|.|- +++++-.++++.+.+... .+++-+|.-.+..-++..+..|-++||
T Consensus 23 g~iD~~~l~~li~~l~~~Gv~Gi~~~GstGE~~~Lt~eEr~~~~~~~~~~~~~~~pvi~gv~~~t~~~i~~~~~a~~~Ga 102 (303)
T PRK03620 23 GSFDEAAYREHLEWLAPYGAAALFAAGGTGEFFSLTPDEYSQVVRAAVETTAGRVPVIAGAGGGTAQAIEYAQAAERAGA 102 (303)
T ss_pred CCcCHHHHHHHHHHHHHcCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCCCCcEEEecCCCHHHHHHHHHHHHHhCC
Confidence 5799999999999999999999999999985 568888888887777653 355555554456677788888999999
Q ss_pred CEEe
Q 018252 348 MHAK 351 (359)
Q Consensus 348 ~~ID 351 (359)
+.|=
T Consensus 103 dav~ 106 (303)
T PRK03620 103 DGIL 106 (303)
T ss_pred CEEE
Confidence 9873
No 381
>PRK02048 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Provisional
Probab=89.60 E-value=29 Score=37.40 Aligned_cols=178 Identities=19% Similarity=0.159 Sum_probs=99.4
Q ss_pred CCCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcCCCCCHHHHHHHhhhc--CCCeEEEEeC---ChHhHHHHHHcCCCEE
Q 018252 144 TVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDL--EGARLPVLTP---NLKGFEAAIAAGAKEV 218 (359)
Q Consensus 144 ~~~~~~k~~ia~~L~~aGv~~IEvG~fvspk~vPq~~D~~ev~~~l~~~--~~~~l~~l~~---n~~gie~a~~aGv~~V 218 (359)
...++.-++-+..|.++|.+.|-++. |.+.+++.+....+.. .+..+...+. +.+-...|++. ++.|
T Consensus 37 T~D~~atv~Qi~~l~~aGceiVRvtv-------~~~~~a~~l~~I~~~l~~~G~~iPLVADIHF~~~~A~~a~~~-v~ki 108 (611)
T PRK02048 37 TMDTEACVAQAKRIIDAGGEYVRLTT-------QGVREAENLMNINIGLRSQGYMVPLVADVHFNPKVADVAAQY-AEKV 108 (611)
T ss_pred cccHHHHHHHHHHHHHcCCCEEEEcC-------CCHHHHHhHHHHHHHHhhcCCCCCEEEecCCCcHHHHHHHHh-hCCE
Confidence 45567778888899999999999986 3345555443333322 3333333332 33334445555 7777
Q ss_pred EEecC----CchHHH-----HhhhcCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCC---CC--CCHHHHH----
Q 018252 219 AIFAS----ASEAFS-----KSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVE---GA--IPPSKVA---- 280 (359)
Q Consensus 219 ~i~~s----~S~~~~-----~~n~~~t~~e~l~~i~~~i~~Ak~~G~~V~~~is~~fg~~~~---~r--~~~e~l~---- 280 (359)
++-.. .-..|. ...+....+..-+++.++++.||++|+.+|.-+- .|.-.. .+ .+|+-++
T Consensus 109 RINPGN~~~~~k~f~~~~Ytdeey~~el~~i~e~~~~~v~~ak~~~~~iRIGvN--~GSL~~~i~~~yg~tpe~mVeSAl 186 (611)
T PRK02048 109 RINPGNYVDPGRTFKKLEYTDEEYAQEIQKIRDRFVPFLNICKENHTAIRIGVN--HGSLSDRIMSRYGDTPEGMVESCM 186 (611)
T ss_pred EECCCcCCCccccccccccchhhhhhhhhhHHHHHHHHHHHHHHCCCCEEEecC--CcCchHHHHHHhCCChHHHHHHHH
Confidence 77211 000011 1112222344457889999999999999986553 222110 11 2555443
Q ss_pred HHHHHHHHCCcC--EEEEcCCCCCCcHHHHHHHHHHHHHhCCCceEEEEeCCC
Q 018252 281 YVAKELHDMGCF--EISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDT 331 (359)
Q Consensus 281 ~~a~~l~~~Gad--~I~L~DT~G~~~P~~v~~lv~~l~~~~p~~~L~~H~HNd 331 (359)
+.++.+.+.|-+ .|+++.+.-.-.-..++.++..+.+.--+.||+++..-.
T Consensus 187 e~~~i~e~~~f~diviS~KsS~~~~~V~AyRlLa~~l~~~g~dyPLHLGvTEA 239 (611)
T PRK02048 187 EFLRICVEEHFTDVVISIKASNTVVMVRTVRLLVAVMEAEGMHYPLHLGVTEA 239 (611)
T ss_pred HHHHHHHHCCCCcEEEEEEeCCcHHHHHHHHHHHHHHHhcCCCCceEEEEecC
Confidence 345566677875 578888887555555666666665432223455544443
No 382
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=89.51 E-value=2.7 Score=40.50 Aligned_cols=82 Identities=11% Similarity=0.039 Sum_probs=65.9
Q ss_pred CCCCHHHHHHHHHHHHHCCcCEEEEcCCCCCC---cHHHHHHHHHHHHHhCC-CceEEEEe-CCCCCcHHHHHHHHHHcC
Q 018252 272 GAIPPSKVAYVAKELHDMGCFEISLGDTIGVG---TPGTVVPMLEAVMAVVP-VEKLAVHL-HDTYGQSLPNILISLQVS 346 (359)
Q Consensus 272 ~r~~~e~l~~~a~~l~~~Gad~I~L~DT~G~~---~P~~v~~lv~~l~~~~p-~~~L~~H~-HNd~GLAlANalaAv~AG 346 (359)
+..|.+.+.+.++.+.+.|++-|.+.-|+|=. +.++-.++++.+.+... .+++-+|. +++.--++..+..|.++|
T Consensus 14 g~iD~~~~~~~i~~l~~~Gv~Gi~~~GstGE~~~Ls~~Er~~~~~~~~~~~~~~~~vi~gv~~~s~~~~i~~a~~a~~~G 93 (285)
T TIGR00674 14 GSVDFAALEKLIDFQIENGTDAIVVVGTTGESPTLSHEEHKKVIEFVVDLVNGRVPVIAGTGSNATEEAISLTKFAEDVG 93 (285)
T ss_pred CCcCHHHHHHHHHHHHHcCCCEEEECccCcccccCCHHHHHHHHHHHHHHhCCCCeEEEeCCCccHHHHHHHHHHHHHcC
Confidence 57999999999999999999999999998854 56777777777777654 35666665 567778899999999999
Q ss_pred CCEEece
Q 018252 347 PMHAKPC 353 (359)
Q Consensus 347 a~~ID~t 353 (359)
|+.|=..
T Consensus 94 ad~v~v~ 100 (285)
T TIGR00674 94 ADGFLVV 100 (285)
T ss_pred CCEEEEc
Confidence 9987543
No 383
>PRK12738 kbaY tagatose-bisphosphate aldolase; Reviewed
Probab=89.47 E-value=5.6 Score=38.94 Aligned_cols=94 Identities=13% Similarity=0.052 Sum_probs=68.7
Q ss_pred HHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHHCCcCE-EEEcCC-CCCCcHHHHHHHHHHHHHhCCC
Q 018252 244 YRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFE-ISLGDT-IGVGTPGTVVPMLEAVMAVVPV 321 (359)
Q Consensus 244 i~~~i~~Ak~~G~~V~~~is~~fg~~~~~r~~~e~l~~~a~~l~~~Gad~-I~L~DT-~G~~~P~~v~~lv~~l~~~~p~ 321 (359)
++++++.|++.|+-|- +|.+ ++.+.+..+++.+.+.+... |.+... .-.+....+..++..+.+..+
T Consensus 6 ~k~iL~~A~~~~yAV~-----AfN~-----~n~e~~~avi~AAee~~sPvIlq~s~~~~~~~~~~~~~~~~~~~a~~~~- 74 (286)
T PRK12738 6 TKYLLQDAQANGYAVP-----AFNI-----HNAETIQAILEVCSEMRSPVILAGTPGTFKHIALEEIYALCSAYSTTYN- 74 (286)
T ss_pred HHHHHHHHHHCCceEE-----EEEe-----CCHHHHHHHHHHHHHHCCCEEEEcCcchhhhCCHHHHHHHHHHHHHHCC-
Confidence 5678899999999772 3433 47888999999999988764 443332 222445667788888888775
Q ss_pred ceEEEEeCCCCCcHHHHHHHHHHcCCCEE
Q 018252 322 EKLAVHLHDTYGQSLPNILISLQVSPMHA 350 (359)
Q Consensus 322 ~~L~~H~HNd~GLAlANalaAv~AGa~~I 350 (359)
+|+.+|. |-|..+..+..|+++|.+-|
T Consensus 75 VPValHL--DHg~~~e~i~~ai~~GFtSV 101 (286)
T PRK12738 75 MPLALHL--DHHESLDDIRRKVHAGVRSA 101 (286)
T ss_pred CCEEEEC--CCCCCHHHHHHHHHcCCCeE
Confidence 6788664 77888999999999998743
No 384
>PTZ00372 endonuclease 4-like protein; Provisional
Probab=89.44 E-value=28 Score=35.89 Aligned_cols=120 Identities=17% Similarity=0.120 Sum_probs=72.0
Q ss_pred hHHHHHHcCCCEEEEecCCchHHHHhhhcCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHH
Q 018252 206 GFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKE 285 (359)
Q Consensus 206 gie~a~~aGv~~V~i~~s~S~~~~~~n~~~t~~e~l~~i~~~i~~Ak~~G~~V~~~is~~fg~~~~~r~~~e~l~~~a~~ 285 (359)
.+++|.+.|++.|.+... +.. -....++.++++.+.++.+.+....|...|....+....=-.+++.+.++.+.
T Consensus 223 eL~rA~~LGa~~VV~HPG-s~~-----~~~~~ee~i~~i~e~L~~~la~~~gV~IlLENmag~g~~lG~~~eeL~~Iid~ 296 (413)
T PTZ00372 223 DLQRCEQLGIKLYNFHPG-STV-----GQCSKEEGIKNIADCINKAHEETKSVIIVLENTAGQKNSVGSKFEDLRDIIAL 296 (413)
T ss_pred HHHHHHHcCCCEEEECCC-cCC-----CCCCHHHHHHHHHHHHHHHHhCcCCCEEEEecCCCCCCcccCCHHHHHHHHHh
Confidence 466777789998777543 211 11234677888888877776655556555653322211112478888888776
Q ss_pred HHHCCcCEEEEc-CCC-----CC--CcHHHHHHHHHHHHHhCC-CceEEEEeCCCCC
Q 018252 286 LHDMGCFEISLG-DTI-----GV--GTPGTVVPMLEAVMAVVP-VEKLAVHLHDTYG 333 (359)
Q Consensus 286 l~~~Gad~I~L~-DT~-----G~--~~P~~v~~lv~~l~~~~p-~~~L~~H~HNd~G 333 (359)
+.+ .++|.+| ||. |. -+|..+.+++..+.+.++ +-.-.+|+||..|
T Consensus 297 v~~--~~rlGvCLDTcHafaAGydl~t~e~~~~~l~~f~~~iGl~rL~~vHLNDSk~ 351 (413)
T PTZ00372 297 VED--KSRVGVCLDTCHLFAAGYDIRTKESFDKVMKEFDEIVGLKYLKAVHLNDSKS 351 (413)
T ss_pred cCC--cCCeEEEEEHHHHHhcCCCCCcHHHHHHHHHHHHHhcChhheeEEEEEcCCC
Confidence 642 2333332 553 32 367788888888877664 3356789988753
No 385
>PF01702 TGT: Queuine tRNA-ribosyltransferase; InterPro: IPR002616 This is a family of queuine, archaeosine and general tRNA-ribosyltransferases 2.4.2.29 from EC, also known as tRNA-guanine transglycosylase and guanine insertion enzyme. Queuine tRNA-ribosyltransferase modifies tRNAs for asparagine, aspartic acid, histidine and tyrosine with queuine at position 34 and with archaeosine at position 15 in archaeal tRNAs. In bacterial it catalyses the exchange of guanine-34 at the wobble position with 7-aminomethyl-7-deazaguanine, and the addition of a cyclopentenediol moiety to 7-aminomethyl-7-deazaguanine-34 tRNA; giving a hypermodified base queuine in the wobble position [, ]. The aligned region contains a zinc binding motif C-x-C-x2-C-x29-H, and important tRNA and 7-aminomethyl-7deazaguanine binding residues [].; GO: 0008479 queuine tRNA-ribosyltransferase activity, 0006400 tRNA modification, 0008616 queuosine biosynthetic process; PDB: 2ASH_A 1J2B_A 1IT8_A 1IT7_B 1IQ8_A 1R5Y_A 1P0B_A 3BL3_A 3EOS_A 1EFZ_A ....
Probab=89.43 E-value=12 Score=35.08 Aligned_cols=80 Identities=18% Similarity=0.157 Sum_probs=56.6
Q ss_pred CCCCHHHHHHHHHHHHHCCcCEEEEcCCCCCCcHHHHHHHHHHHHHhCCCceEEEEeCCCCCc-HHHHHHHHHHcCCCEE
Q 018252 272 GAIPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQ-SLPNILISLQVSPMHA 350 (359)
Q Consensus 272 ~r~~~e~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~lv~~l~~~~p~~~L~~H~HNd~GL-AlANalaAv~AGa~~I 350 (359)
|-...+...+.++.+.+.+.+.+.|.--.......++.++++.+.+.+|. ..-.|. +|. ...+.+.++.+|+|.+
T Consensus 63 Gg~~~~lR~~s~~~l~~~~~~g~~igGl~~~~~~~~~~~~l~~i~~~lp~-~~pr~l---~G~~~P~~i~~~v~~GvD~f 138 (238)
T PF01702_consen 63 GGDDKDLRRRSAEELSEDGFDGYAIGGLSPGEEKEERLEILEAIINNLPP-DKPRYL---LGVGTPEEILEAVYLGVDLF 138 (238)
T ss_dssp -TT-HHHHHHHHHHHHHSS-SEEEE-SSSSSSHHHHHHHHHHHHHHCS-T-TS-EEE---TTB-SHHHHHHHHHTT--EE
T ss_pred CCCCHHHHHHHHHHHHhcccccccccCCcCCCCHHHHHHHHHHHHhhCCc-ccceec---cCCCCHHHHHHHHHcCCcEE
Confidence 45667777888888888779999998766666789999999999998873 233344 333 5679999999999999
Q ss_pred eceee
Q 018252 351 KPCFT 355 (359)
Q Consensus 351 D~tl~ 355 (359)
|++..
T Consensus 139 Ds~~p 143 (238)
T PF01702_consen 139 DSSYP 143 (238)
T ss_dssp EESHH
T ss_pred cchHH
Confidence 99853
No 386
>PRK04147 N-acetylneuraminate lyase; Provisional
Probab=89.39 E-value=2.6 Score=40.80 Aligned_cols=82 Identities=12% Similarity=0.052 Sum_probs=69.5
Q ss_pred CCCCHHHHHHHHHHHHH-CCcCEEEEcCCCCC---CcHHHHHHHHHHHHHhCCC-ceEEEEe-CCCCCcHHHHHHHHHHc
Q 018252 272 GAIPPSKVAYVAKELHD-MGCFEISLGDTIGV---GTPGTVVPMLEAVMAVVPV-EKLAVHL-HDTYGQSLPNILISLQV 345 (359)
Q Consensus 272 ~r~~~e~l~~~a~~l~~-~Gad~I~L~DT~G~---~~P~~v~~lv~~l~~~~p~-~~L~~H~-HNd~GLAlANalaAv~A 345 (359)
+..|.+-+.++++.+.+ .|++-|.++-|.|= ++.++-.++++.+.+..++ +++-+|. +++.--++..+..|-++
T Consensus 19 g~iD~~~~~~li~~l~~~~Gv~gi~v~GstGE~~~Ls~eEr~~~~~~~~~~~~~~~~viagvg~~~t~~ai~~a~~a~~~ 98 (293)
T PRK04147 19 GQIDEQGLRRLVRFNIEKQGIDGLYVGGSTGEAFLLSTEEKKQVLEIVAEEAKGKVKLIAQVGSVNTAEAQELAKYATEL 98 (293)
T ss_pred CCcCHHHHHHHHHHHHhcCCCCEEEECCCccccccCCHHHHHHHHHHHHHHhCCCCCEEecCCCCCHHHHHHHHHHHHHc
Confidence 57999999999999999 99999999999886 5677777888877777653 6777777 78888899999999999
Q ss_pred CCCEEece
Q 018252 346 SPMHAKPC 353 (359)
Q Consensus 346 Ga~~ID~t 353 (359)
||+.|=+.
T Consensus 99 Gad~v~v~ 106 (293)
T PRK04147 99 GYDAISAV 106 (293)
T ss_pred CCCEEEEe
Confidence 99987543
No 387
>cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain. Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.
Probab=89.39 E-value=21 Score=36.19 Aligned_cols=139 Identities=19% Similarity=0.106 Sum_probs=82.9
Q ss_pred HHHHHHcCCCEEEEecCC---------chHHHH--hhhcCCHHHHHHHHHHHHHHHHhC-C--CcEEEEEeee-ecC---
Q 018252 207 FEAAIAAGAKEVAIFASA---------SEAFSK--SNINCSIEDSLVRYRAVAHAAKVL-S--IPVRGYVSCV-VGC--- 268 (359)
Q Consensus 207 ie~a~~aGv~~V~i~~s~---------S~~~~~--~n~~~t~~e~l~~i~~~i~~Ak~~-G--~~V~~~is~~-fg~--- 268 (359)
.++|.++|.|-|.+...- |+..++ ..+|-+.++-++-+.++++..|+. | +.|..-++.. +..
T Consensus 156 A~ra~~AGfDgVEih~ah~GyLl~qFLSp~~N~RtDeyGGslenR~rf~~eii~~vr~~~g~~f~v~vri~~~~~~~~~~ 235 (382)
T cd02931 156 AVIAKEAGFDGVEIHAVHEGYLLDQFTISLFNKRTDKYGGSLENRLRFAIEIVEEIKARCGEDFPVSLRYSVKSYIKDLR 235 (382)
T ss_pred HHHHHHcCCCEEEEeccccChHHHHhcCCccCCCCCcCCCCHHHHhHHHHHHHHHHHHhcCCCceEEEEEechhhccccc
Confidence 356677899988775432 111211 225667777777778888888774 3 3454444421 000
Q ss_pred ----C----CCCCCCHHHHHHHHHHHHHCCcCEEEEcCCCCC-----------C-cHHHHHHHHHHHHHhCCCceEEE-E
Q 018252 269 ----P----VEGAIPPSKVAYVAKELHDMGCFEISLGDTIGV-----------G-TPGTVVPMLEAVMAVVPVEKLAV-H 327 (359)
Q Consensus 269 ----~----~~~r~~~e~l~~~a~~l~~~Gad~I~L~DT~G~-----------~-~P~~v~~lv~~l~~~~p~~~L~~-H 327 (359)
| ..+-.++++..++++.+.++|+|-|.+. .|. . .+.....+++.+++.+. +++.. .
T Consensus 236 ~~~~~~~~~~~~g~~~e~~~~~~~~l~~~gvD~l~vs--~g~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~-~pvi~~G 312 (382)
T cd02931 236 QGALPGEEFQEKGRDLEEGLKAAKILEEAGYDALDVD--AGSYDAWYWNHPPMYQKKGMYLPYCKALKEVVD-VPVIMAG 312 (382)
T ss_pred cccccccccccCCCCHHHHHHHHHHHHHhCCCEEEeC--CCCCcccccccCCccCCcchhHHHHHHHHHHCC-CCEEEeC
Confidence 0 0123578999999999999999988874 221 1 11222456777888765 34443 3
Q ss_pred eCCCCCcHHHHHHHHHHcC-CCEEec
Q 018252 328 LHDTYGQSLPNILISLQVS-PMHAKP 352 (359)
Q Consensus 328 ~HNd~GLAlANalaAv~AG-a~~ID~ 352 (359)
..+ ....+..+++.| ||.|-.
T Consensus 313 ~i~----~~~~~~~~l~~g~~D~V~~ 334 (382)
T cd02931 313 RME----DPELASEAINEGIADMISL 334 (382)
T ss_pred CCC----CHHHHHHHHHcCCCCeeee
Confidence 332 345677888877 777643
No 388
>COG0854 PdxJ Pyridoxal phosphate biosynthesis protein [Coenzyme metabolism]
Probab=89.38 E-value=0.86 Score=42.95 Aligned_cols=124 Identities=21% Similarity=0.258 Sum_probs=74.4
Q ss_pred HHHHhhhc--CCCeEEEEe-CChHhHHHHHHcCCCEEEEecC-CchHHHHhhhcCCHHHHHHHHHHHHHHHHhCCCcEEE
Q 018252 185 VMEAVRDL--EGARLPVLT-PNLKGFEAAIAAGAKEVAIFAS-ASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRG 260 (359)
Q Consensus 185 v~~~l~~~--~~~~l~~l~-~n~~gie~a~~aGv~~V~i~~s-~S~~~~~~n~~~t~~e~l~~i~~~i~~Ak~~G~~V~~ 260 (359)
+.+.+++. .+.+++-++ |+.++++.+.+.|++.|-++.. -.+.+... ...-.+..++++....++|.++|+.|.+
T Consensus 113 l~~~v~~L~~~GirVSLFiD~d~~qi~aa~~~gA~~IELhTG~Ya~~~~~~-~~~~~~~el~rl~~~a~~A~~lGL~VnA 191 (243)
T COG0854 113 LRDAVRRLKNAGIRVSLFIDPDPEQIEAAAEVGAPRIELHTGPYADAHDAA-EQARADAELERLAKAAKLAAELGLKVNA 191 (243)
T ss_pred HHHHHHHHHhCCCeEEEEeCCCHHHHHHHHHhCCCEEEEecccccccCChH-HHHHHHHHHHHHHHHHHHHHHcCceEec
Confidence 33444433 578998888 4779999999999999998753 22222210 0011233688999999999999999832
Q ss_pred EEeeeecCCCCCCCCHHHHHHHHHHHHHCCcCEEEEcCCCCCCcHHHHHHHHHHHHH
Q 018252 261 YVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMA 317 (359)
Q Consensus 261 ~is~~fg~~~~~r~~~e~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~lv~~l~~ 317 (359)
| .+-+-+...-++++.. +.+..+-.--++|.+=++.+..|.++...++.
T Consensus 192 ------G-HgLty~Nv~~~a~~~~-i~ElnIGH~iia~Av~~Gl~~aV~~m~~~~~~ 240 (243)
T COG0854 192 ------G-HGLTYHNVKPLAAIPP-LAELNIGHSIIARAVFVGLEEAVREMKRLMKR 240 (243)
T ss_pred ------C-CCccccchHHHhcCCc-ceeecccHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 1 1111233333333332 33333222223566667778888888777665
No 389
>PRK06582 coproporphyrinogen III oxidase; Provisional
Probab=89.35 E-value=15 Score=37.25 Aligned_cols=94 Identities=16% Similarity=0.049 Sum_probs=61.0
Q ss_pred CeEEEEe-C---ChHhHHHHHHcCCCEEEEecCCchHHHHhhhcC--CHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecC
Q 018252 195 ARLPVLT-P---NLKGFEAAIAAGAKEVAIFASASEAFSKSNINC--SIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGC 268 (359)
Q Consensus 195 ~~l~~l~-~---n~~gie~a~~aGv~~V~i~~s~S~~~~~~n~~~--t~~e~l~~i~~~i~~Ak~~G~~V~~~is~~fg~ 268 (359)
.+++.-+ | +.+.++...++|+.+|.+-+..-+-.....+|+ +.+ .+.++++.+++.+..+.+.++ +|.
T Consensus 98 ~eitiE~nP~~~~~e~l~~l~~~GvnRiSiGvQS~~d~~L~~lgR~h~~~----~~~~ai~~~~~~~~~v~~DlI--~Gl 171 (390)
T PRK06582 98 TEITLETNPTSFETEKFKAFKLAGINRVSIGVQSLKEDDLKKLGRTHDCM----QAIKTIEAANTIFPRVSFDLI--YAR 171 (390)
T ss_pred CEEEEEeCCCcCCHHHHHHHHHCCCCEEEEECCcCCHHHHHHcCCCCCHH----HHHHHHHHHHHhCCcEEEEee--cCC
Confidence 4555444 3 235577777899999988764333233334554 444 444566777777777777776 887
Q ss_pred CCCCCCCHHHHHHHHHHHHHCCcCEEEEc
Q 018252 269 PVEGAIPPSKVAYVAKELHDMGCFEISLG 297 (359)
Q Consensus 269 ~~~~r~~~e~l~~~a~~l~~~Gad~I~L~ 297 (359)
|.. +.+.+.+-++.+.+.+++.|++=
T Consensus 172 Pgq---t~e~~~~~l~~~~~l~p~his~y 197 (390)
T PRK06582 172 SGQ---TLKDWQEELKQAMQLATSHISLY 197 (390)
T ss_pred CCC---CHHHHHHHHHHHHhcCCCEEEEe
Confidence 754 56677777888888899877654
No 390
>TIGR01521 FruBisAldo_II_B fructose-bisphosphate aldolase, class II, Calvin cycle subtype. Members of this family are class II examples of the enzyme fructose-bisphosphate aldolase, an enzyme both of glycolysis and (in the opposite direction) of the Calvin cycle of CO2 fixation. A deep split separates the tightly conserved yeast/E. coli/Mycobacterium subtype (all species lacking the Calvin cycle) represented by model TIGR01520 from a broader group of aldolases that includes both tagatose- and fructose-bisphosphate aldolases. This model represents a distinct, elongated, very well conserved subtype within the latter group. Most species with this aldolase subtype have the Calvin cycle.
Probab=89.33 E-value=6.1 Score=39.74 Aligned_cols=99 Identities=9% Similarity=0.048 Sum_probs=71.8
Q ss_pred HHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHHCCcCE-EEEcCCC-CCCcHHHHHHHHHHHHHhCCC
Q 018252 244 YRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFE-ISLGDTI-GVGTPGTVVPMLEAVMAVVPV 321 (359)
Q Consensus 244 i~~~i~~Ak~~G~~V~~~is~~fg~~~~~r~~~e~l~~~a~~l~~~Gad~-I~L~DT~-G~~~P~~v~~lv~~l~~~~p~ 321 (359)
++++++.|++.|+-|- +|.+ .+.+.+..+++.+.+.+... |.+.-.. ..+....+..++..+.+..+.
T Consensus 4 ~k~iL~~A~~~~yAV~-----AfN~-----~n~e~~~aii~AAEe~~sPvIlq~s~~~~~~~g~~~~~~~~~~~ae~~~~ 73 (347)
T TIGR01521 4 MRQLLDHAAEFGYGVP-----AFNV-----NNMEQMRAIMEAADKTDSPVILQASRGARSYAGAPFLRHLILAAIEEYPH 73 (347)
T ss_pred HHHHHHHHHHcCceEE-----EEee-----CCHHHHHHHHHHHHHhCCCEEEECCcchhhhCCHHHHHHHHHHHHHhCCC
Confidence 4678889999999763 3443 47889999999999988764 4443322 233346678888888877765
Q ss_pred ceEEEEeCCCCCcHHHHHHHHHHcCCCE--Eecee
Q 018252 322 EKLAVHLHDTYGQSLPNILISLQVSPMH--AKPCF 354 (359)
Q Consensus 322 ~~L~~H~HNd~GLAlANalaAv~AGa~~--ID~tl 354 (359)
+|+.+|. |-|.....+..|+++|.+- ||+|-
T Consensus 74 VPValHL--DHg~~~e~i~~Ai~~GFtSVMiDgS~ 106 (347)
T TIGR01521 74 IPVVMHQ--DHGNSPATCQRAIQLGFTSVMMDGSL 106 (347)
T ss_pred CcEEEEC--CCCCCHHHHHHHHHcCCCEEeecCcC
Confidence 6888664 7788899999999999874 45554
No 391
>TIGR02321 Pphn_pyruv_hyd phosphonopyruvate hydrolase. This family consists of phosphonopyruvate hydrolase, an enzyme closely related to phosphoenolpyruvate phosphomutase. It cleaves the direct C-P bond of phosphonopyruvate. The characterized example is from Variovorax sp. Pal2.
Probab=89.33 E-value=7.7 Score=38.03 Aligned_cols=133 Identities=18% Similarity=0.136 Sum_probs=80.6
Q ss_pred HHHHHcCCCEEEEec-CCchHHHHhhhc-CCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHH
Q 018252 208 EAAIAAGAKEVAIFA-SASEAFSKSNIN-CSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKE 285 (359)
Q Consensus 208 e~a~~aGv~~V~i~~-s~S~~~~~~n~~-~t~~e~l~~i~~~i~~Ak~~G~~V~~~is~~fg~~~~~r~~~e~l~~~a~~ 285 (359)
..+-++|.+-+...- +.+-.+-.--.+ .+.++.++.++.+.+.. .++|.+.+-.-|| -++ .+.+.+++
T Consensus 29 ri~e~aGf~ai~~ss~~va~slG~pD~g~l~~~e~~~~~~~I~~~~---~lPv~aD~d~GyG------~~~-~v~~tV~~ 98 (290)
T TIGR02321 29 KLAEQAGFGGIWGSGFELSASYAVPDANILSMSTHLEMMRAIASTV---SIPLIADIDTGFG------NAV-NVHYVVPQ 98 (290)
T ss_pred HHHHHcCCCEEEECHHHHHHHCCCCCcccCCHHHHHHHHHHHHhcc---CCCEEEECCCCCC------CcH-HHHHHHHH
Confidence 344456777665531 111111111112 46788888777776554 5777655543333 233 68899999
Q ss_pred HHHCCcCEEEEcCCC----------C---CCcHHHHHHHHHHHHHhCCCceEEEEeC-------CCCCcHHHHHHHHHHc
Q 018252 286 LHDMGCFEISLGDTI----------G---VGTPGTVVPMLEAVMAVVPVEKLAVHLH-------DTYGQSLPNILISLQV 345 (359)
Q Consensus 286 l~~~Gad~I~L~DT~----------G---~~~P~~v~~lv~~l~~~~p~~~L~~H~H-------Nd~GLAlANalaAv~A 345 (359)
+.++|+--|+|-|.+ | +..++++.+-|++.++.-.+..+-+=.- ..+--++.-+.+-.+|
T Consensus 99 ~~~aGvagi~IEDq~~pk~cg~~~~g~~~l~~~ee~~~kI~Aa~~a~~~~d~~I~ARTDa~~~~~g~deAI~Ra~aY~eA 178 (290)
T TIGR02321 99 YEAAGASAIVMEDKTFPKDTSLRTDGRQELVRIEEFQGKIAAATAARADRDFVVIARVEALIAGLGQQEAVRRGQAYEEA 178 (290)
T ss_pred HHHcCCeEEEEeCCCCCcccccccCCCccccCHHHHHHHHHHHHHhCCCCCEEEEEEeccccccCCHHHHHHHHHHHHHc
Confidence 999999999999975 2 3466777777777776432212222111 1224578888899999
Q ss_pred CCCEE
Q 018252 346 SPMHA 350 (359)
Q Consensus 346 Ga~~I 350 (359)
|||.|
T Consensus 179 GAD~i 183 (290)
T TIGR02321 179 GADAI 183 (290)
T ss_pred CCCEE
Confidence 99976
No 392
>PLN02417 dihydrodipicolinate synthase
Probab=89.30 E-value=2.9 Score=40.39 Aligned_cols=81 Identities=10% Similarity=0.031 Sum_probs=67.1
Q ss_pred CCCCHHHHHHHHHHHHHCCcCEEEEcCCCCC---CcHHHHHHHHHHHHHhCCC-ceEEEEe-CCCCCcHHHHHHHHHHcC
Q 018252 272 GAIPPSKVAYVAKELHDMGCFEISLGDTIGV---GTPGTVVPMLEAVMAVVPV-EKLAVHL-HDTYGQSLPNILISLQVS 346 (359)
Q Consensus 272 ~r~~~e~l~~~a~~l~~~Gad~I~L~DT~G~---~~P~~v~~lv~~l~~~~p~-~~L~~H~-HNd~GLAlANalaAv~AG 346 (359)
+..|.+-+.+.++.+.+.|++-|.++-|.|= ++.++-.++++.+.+..++ +++-+|. +++.--++..+..|-++|
T Consensus 17 g~iD~~~~~~~i~~l~~~Gv~Gi~~~GstGE~~~ls~~Er~~~~~~~~~~~~~~~pvi~gv~~~~t~~~i~~a~~a~~~G 96 (280)
T PLN02417 17 GRFDLEAYDSLVNMQIENGAEGLIVGGTTGEGQLMSWDEHIMLIGHTVNCFGGKIKVIGNTGSNSTREAIHATEQGFAVG 96 (280)
T ss_pred CCcCHHHHHHHHHHHHHcCCCEEEECccCcchhhCCHHHHHHHHHHHHHHhCCCCcEEEECCCccHHHHHHHHHHHHHcC
Confidence 5799999999999999999999999999995 5577777788777776543 5666654 778888999999999999
Q ss_pred CCEEec
Q 018252 347 PMHAKP 352 (359)
Q Consensus 347 a~~ID~ 352 (359)
|+.|=.
T Consensus 97 adav~~ 102 (280)
T PLN02417 97 MHAALH 102 (280)
T ss_pred CCEEEE
Confidence 997644
No 393
>PRK08185 hypothetical protein; Provisional
Probab=89.24 E-value=4.1 Score=39.84 Aligned_cols=92 Identities=10% Similarity=0.073 Sum_probs=66.2
Q ss_pred HHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHHCCcCE-EEEcCCCCCCcHHHHHHHHHHHHHhCCCce
Q 018252 245 RAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFE-ISLGDTIGVGTPGTVVPMLEAVMAVVPVEK 323 (359)
Q Consensus 245 ~~~i~~Ak~~G~~V~~~is~~fg~~~~~r~~~e~l~~~a~~l~~~Gad~-I~L~DT~G~~~P~~v~~lv~~l~~~~p~~~ 323 (359)
+++++.|++.|+-|- +|. -++.+.+..+++.+.+.+... |.+.-..--..|..+..++..+.+... +|
T Consensus 2 ~~~L~~A~~~~yaV~-----AfN-----~~n~e~~~avi~AAee~~sPvIl~~~~~~~~~~~~~~~~~~~~~a~~~~-vP 70 (283)
T PRK08185 2 KELLKVAKEHQFAVG-----AFN-----VADSCFLRAVVEEAEANNAPAIIAIHPNELDFLGDNFFAYVRERAKRSP-VP 70 (283)
T ss_pred HHHHHHHHHcCceEE-----EEE-----eCCHHHHHHHHHHHHHhCCCEEEEeCcchhhhccHHHHHHHHHHHHHCC-CC
Confidence 467888999998773 343 258889999999999998764 444433322234557778877777765 57
Q ss_pred EEEEeCCCCCcHHHHHHHHHHcCCCE
Q 018252 324 LAVHLHDTYGQSLPNILISLQVSPMH 349 (359)
Q Consensus 324 L~~H~HNd~GLAlANalaAv~AGa~~ 349 (359)
+.+| =|-|.-+..+..|+++|++-
T Consensus 71 V~lH--LDHg~~~e~i~~ai~~Gf~S 94 (283)
T PRK08185 71 FVIH--LDHGATIEDVMRAIRCGFTS 94 (283)
T ss_pred EEEE--CCCCCCHHHHHHHHHcCCCE
Confidence 7765 47788899999999999654
No 394
>PRK13813 orotidine 5'-phosphate decarboxylase; Provisional
Probab=89.17 E-value=8.8 Score=35.19 Aligned_cols=170 Identities=14% Similarity=0.075 Sum_probs=93.1
Q ss_pred CCHHHHHHHHHHHHhCCCCEEEEecc-CCCCCcCCCCCHHHHHHHhhhcCCCe--EE-EEeCCh--HhHHHHHHcCCCEE
Q 018252 145 VPTGVKVELIRRLVSSGLPVVEATSF-VSPKWVPQLADARDVMEAVRDLEGAR--LP-VLTPNL--KGFEAAIAAGAKEV 218 (359)
Q Consensus 145 ~~~~~k~~ia~~L~~aGv~~IEvG~f-vspk~vPq~~D~~ev~~~l~~~~~~~--l~-~l~~n~--~gie~a~~aGv~~V 218 (359)
.+.++-+++++.+... +..||+|.. ... .-.++++.+++....- +- ..+++. .-++.+.++|++.|
T Consensus 13 ~~~~~~~~~~~~~~~~-~~~vk~g~~l~~~-------~G~~~v~~ir~~~~i~~D~k~~di~~~~~~~~~~~~~~gad~v 84 (215)
T PRK13813 13 TDRERALKIAEELDDY-VDAIKVGWPLVLA-------SGLGIIEELKRYAPVIADLKVADIPNTNRLICEAVFEAGAWGI 84 (215)
T ss_pred CCHHHHHHHHHhcccc-CCEEEEcHHHHHh-------hCHHHHHHHHhcCCEEEEeeccccHHHHHHHHHHHHhCCCCEE
Confidence 4566777888777654 478999972 110 1123445555432211 11 113332 33478888999988
Q ss_pred EEecCCchHHHHhhhcCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHHCCcCEEEEcC
Q 018252 219 AIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGD 298 (359)
Q Consensus 219 ~i~~s~S~~~~~~n~~~t~~e~l~~i~~~i~~Ak~~G~~V~~~is~~fg~~~~~r~~~e~l~~~a~~l~~~Gad~I~L~D 298 (359)
.+..-... +.+..+++.+++.|+++-+.+.+ ..+.....-.+++..++....+.|.+...+.
T Consensus 85 tvh~e~g~---------------~~l~~~i~~~~~~g~~~~v~~~~--~~~~~~~~~~~~~~~v~~m~~e~G~~g~~~~- 146 (215)
T PRK13813 85 IVHGFTGR---------------DSLKAVVEAAAESGGKVFVVVEM--SHPGALEFIQPHADKLAKLAQEAGAFGVVAP- 146 (215)
T ss_pred EEcCcCCH---------------HHHHHHHHHHHhcCCeEEEEEeC--CCCCCCCCHHHHHHHHHHHHHHhCCCeEEEC-
Confidence 77553211 13456788889999987554432 1221111113456667777778898765422
Q ss_pred CCCCCcHHHHHHHHHHHHHhCCCceEEEEeCCCCCcHHH--HHHHHHHcCCCEEe
Q 018252 299 TIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLP--NILISLQVSPMHAK 351 (359)
Q Consensus 299 T~G~~~P~~v~~lv~~l~~~~p~~~L~~H~HNd~GLAlA--NalaAv~AGa~~ID 351 (359)
... .+.++.+++..+. .+.+ =|-|.... |+-.++++|++.|-
T Consensus 147 ---~~~----~~~i~~l~~~~~~-~~~i---vdgGI~~~g~~~~~~~~aGad~iV 190 (215)
T PRK13813 147 ---ATR----PERVRYIRSRLGD-ELKI---ISPGIGAQGGKAADAIKAGADYVI 190 (215)
T ss_pred ---CCc----chhHHHHHHhcCC-CcEE---EeCCcCCCCCCHHHHHHcCCCEEE
Confidence 111 2334556655542 1111 22344433 48899999999874
No 395
>PRK14329 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=89.14 E-value=19 Score=37.41 Aligned_cols=144 Identities=15% Similarity=0.120 Sum_probs=81.5
Q ss_pred CCCCHHHHHHHHHHHHhCCCCEEEEec-----c-CC-CC-CcCCCCCHHHHHHHhhhc-CCCeEEEEe--CC---hHhHH
Q 018252 143 NTVPTGVKVELIRRLVSSGLPVVEATS-----F-VS-PK-WVPQLADARDVMEAVRDL-EGARLPVLT--PN---LKGFE 208 (359)
Q Consensus 143 ~~~~~~~k~~ia~~L~~aGv~~IEvG~-----f-vs-pk-~vPq~~D~~ev~~~l~~~-~~~~l~~l~--~n---~~gie 208 (359)
...+.+..++-++.|.+.|++.|-+.. + .. .. ..+...+..++++.+.+. ++.++...+ |+ .+-++
T Consensus 195 rsrs~e~Vv~Ei~~l~~~g~~eI~l~~~~~~~y~~d~~~~~~~~~~~l~~Ll~~l~~~~~~~~ir~~~~~p~~l~~ell~ 274 (467)
T PRK14329 195 RSRDPESILNEVRDLFAKGYKEVTLLGQNVDSYLWYGGGLKKDEAVNFAQLLEMVAEAVPDMRIRFSTSHPKDMTDDVLE 274 (467)
T ss_pred ccCCHHHHHHHHHHHHHCCCeEEEEEeecccccccccCCccccccccHHHHHHHHHhcCCCcEEEEecCCcccCCHHHHH
Confidence 456889999999999999999886532 1 10 00 000012344555555432 344444333 32 23455
Q ss_pred HHHHc--CCCEEEEec-CCchHHHHhhhcCCHHHHHHHHHHHHHHHHhC--CCcEEEEEeeeecCCCCCCCCHHHHHHHH
Q 018252 209 AAIAA--GAKEVAIFA-SASEAFSKSNINCSIEDSLVRYRAVAHAAKVL--SIPVRGYVSCVVGCPVEGAIPPSKVAYVA 283 (359)
Q Consensus 209 ~a~~a--Gv~~V~i~~-s~S~~~~~~n~~~t~~e~l~~i~~~i~~Ak~~--G~~V~~~is~~fg~~~~~r~~~e~l~~~a 283 (359)
...++ |...|++-+ +.|+-..+ .+|+.. ..+.+.++++.++++ ++.+..+++ +|.|.+ +.+.+.+.+
T Consensus 275 ~m~~~~~g~~~i~iglQSgsd~vLk-~m~R~~--t~~~~~~~i~~ir~~~~~~~i~~d~I--vGfPgE---T~edf~~tl 346 (467)
T PRK14329 275 VMAKYDNICKHIHLPVQSGSDRILK-LMNRKY--TREWYLDRIDAIRRIIPDCGISTDMI--AGFPTE---TEEDHQDTL 346 (467)
T ss_pred HHHhCCCCCCeEEeCCCcCCHHHHH-hcCCCC--CHHHHHHHHHHHHHhCCCCEEEEeEE--EeCCCC---CHHHHHHHH
Confidence 55555 788999865 55544333 355421 123445666666765 455666665 787765 556666666
Q ss_pred HHHHHCCcCEE
Q 018252 284 KELHDMGCFEI 294 (359)
Q Consensus 284 ~~l~~~Gad~I 294 (359)
+.+.+.+.+.+
T Consensus 347 ~~i~~l~~~~~ 357 (467)
T PRK14329 347 SLMEEVGYDFA 357 (467)
T ss_pred HHHHhhCCCeE
Confidence 66666776644
No 396
>PF04551 GcpE: GcpE protein; InterPro: IPR004588 This protein previously of unknown biochemical function is essential in Escherichia coli. It has now been characterised as 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase, which converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4CPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate in the sixth step of nonmevalonate terpenoid biosynthesis. The family is largely restricted to bacteria, where it is widely but not universally distributed. No homology can be detected between this family and other proteins.; GO: 0046429 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity, 0016114 terpenoid biosynthetic process, 0055114 oxidation-reduction process; PDB: 2Y0F_C 3NOY_A.
Probab=89.14 E-value=7.3 Score=39.26 Aligned_cols=141 Identities=22% Similarity=0.185 Sum_probs=76.1
Q ss_pred CCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcCCCCCHHHHHHHhhh--cCC--CeEEEEeC-ChHhHHHHHHcCCCEEE
Q 018252 145 VPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRD--LEG--ARLPVLTP-NLKGFEAAIAAGAKEVA 219 (359)
Q Consensus 145 ~~~~~k~~ia~~L~~aGv~~IEvG~fvspk~vPq~~D~~ev~~~l~~--~~~--~~l~~l~~-n~~gie~a~~aGv~~V~ 219 (359)
...+.-++-++.|.++|.+.|-+..+ .+.+++.+.+..+. ..+ +.+++=+- +.+-.-.|+++ ++.|+
T Consensus 28 ~Dv~atv~QI~~L~~aGceivRvavp-------~~~~a~al~~I~~~l~~~g~~iPlVADIHFd~~lAl~a~~~-v~kiR 99 (359)
T PF04551_consen 28 RDVEATVAQIKRLEEAGCEIVRVAVP-------DMEAAEALKEIKKRLRALGSPIPLVADIHFDYRLALEAIEA-VDKIR 99 (359)
T ss_dssp T-HHHHHHHHHHHHHCT-SEEEEEE--------SHHHHHHHHHHHHHHHCTT-SS-EEEEESTTCHHHHHHHHC--SEEE
T ss_pred ccHHHHHHHHHHHHHcCCCEEEEcCC-------CHHHHHHHHHHHHhhccCCCCCCeeeecCCCHHHHHHHHHH-hCeEE
Confidence 55677788888999999999999973 33455444333333 133 44443332 44445556677 99999
Q ss_pred EecCCchHHHHhhhc----CCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCC---C--CCHHH----HHHHHHHH
Q 018252 220 IFASASEAFSKSNIN----CSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEG---A--IPPSK----VAYVAKEL 286 (359)
Q Consensus 220 i~~s~S~~~~~~n~~----~t~~e~l~~i~~~i~~Ak~~G~~V~~~is~~fg~~~~~---r--~~~e~----l~~~a~~l 286 (359)
+-.. |++ ......-++++++++.||++|+.+|.-+- .|.-... + .+++- ..+.++.+
T Consensus 100 INPG--------Ni~~~~~~~~g~~~~~~~~vv~~ake~~ipIRIGvN--~GSL~~~~~~ky~~t~~amvesA~~~~~~l 169 (359)
T PF04551_consen 100 INPG--------NIVDEFQEELGSIREKVKEVVEAAKERGIPIRIGVN--SGSLEKDILEKYGPTPEAMVESALEHVRIL 169 (359)
T ss_dssp E-TT--------TSS----SS-SS-HHHHHHHHHHHHHHT-EEEEEEE--GGGS-HHHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred ECCC--------cccccccccccchHHHHHHHHHHHHHCCCCEEEecc--cccCcHHHHhhccchHHHHHHHHHHHHHHH
Confidence 8332 331 00011135678999999999999997775 4422100 0 01122 22334455
Q ss_pred HHCCcC--EEEEcCCCCCC
Q 018252 287 HDMGCF--EISLGDTIGVG 303 (359)
Q Consensus 287 ~~~Gad--~I~L~DT~G~~ 303 (359)
.+.|-+ .|+++.+-=..
T Consensus 170 e~~~f~~iviSlKsSdv~~ 188 (359)
T PF04551_consen 170 EELGFDDIVISLKSSDVPE 188 (359)
T ss_dssp HHCT-GGEEEEEEBSSHHH
T ss_pred HHCCCCcEEEEEEeCChHH
Confidence 677876 57777764333
No 397
>PRK04147 N-acetylneuraminate lyase; Provisional
Probab=89.09 E-value=9.2 Score=37.02 Aligned_cols=19 Identities=21% Similarity=0.246 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHCCcCEE
Q 018252 276 PSKVAYVAKELHDMGCFEI 294 (359)
Q Consensus 276 ~e~l~~~a~~l~~~Gad~I 294 (359)
.++..++++.+.++|+|.+
T Consensus 85 t~~ai~~a~~a~~~Gad~v 103 (293)
T PRK04147 85 TAEAQELAKYATELGYDAI 103 (293)
T ss_pred HHHHHHHHHHHHHcCCCEE
Confidence 3344444444444444433
No 398
>TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family. This model describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4.
Probab=89.06 E-value=6.2 Score=38.56 Aligned_cols=94 Identities=15% Similarity=0.084 Sum_probs=68.7
Q ss_pred HHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHHCCcCE-EEEcCC-CCCCcHHHHHHHHHHHHHhCCC
Q 018252 244 YRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFE-ISLGDT-IGVGTPGTVVPMLEAVMAVVPV 321 (359)
Q Consensus 244 i~~~i~~Ak~~G~~V~~~is~~fg~~~~~r~~~e~l~~~a~~l~~~Gad~-I~L~DT-~G~~~P~~v~~lv~~l~~~~p~ 321 (359)
++++++.|++.|+-|- +|.+ .+.+.+..+++.+.+.+... |.+.-. ...+....+..++..+.+...
T Consensus 4 ~k~ll~~A~~~~yAV~-----AfN~-----~n~e~~~avi~AAee~~sPvIlq~s~~~~~~~~~~~~~~~~~~~a~~~~- 72 (282)
T TIGR01858 4 TKYMLQDAQAGGYAVP-----AFNI-----HNLETIQAVVETAAEMRSPVILAGTPGTFKHAGTEYIVALCSAASTTYN- 72 (282)
T ss_pred HHHHHHHHHHcCCeEE-----EEEe-----CCHHHHHHHHHHHHHhCCCEEEEeCccHHhhCCHHHHHHHHHHHHHHCC-
Confidence 4678889999999763 3432 47789999999999988764 444332 233445667788888887775
Q ss_pred ceEEEEeCCCCCcHHHHHHHHHHcCCCEE
Q 018252 322 EKLAVHLHDTYGQSLPNILISLQVSPMHA 350 (359)
Q Consensus 322 ~~L~~H~HNd~GLAlANalaAv~AGa~~I 350 (359)
+|+.+|. |-|.....+..|+++|.+-|
T Consensus 73 VPValHL--DHg~~~e~i~~ai~~GFtSV 99 (282)
T TIGR01858 73 MPLALHL--DHHESLDDIRQKVHAGVRSA 99 (282)
T ss_pred CCEEEEC--CCCCCHHHHHHHHHcCCCEE
Confidence 5777654 77778899999999998743
No 399
>COG0635 HemN Coproporphyrinogen III oxidase and related Fe-S oxidoreductases [Coenzyme metabolism]
Probab=89.03 E-value=11 Score=38.67 Aligned_cols=85 Identities=12% Similarity=0.084 Sum_probs=58.9
Q ss_pred HhHHHHHHcCCCEEEEecCCchHHHHhhhcCCHHHHHHHHHHHHHHHHhCCCc-EEEEEeeeecCCCCCCCCHHHHHHHH
Q 018252 205 KGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIP-VRGYVSCVVGCPVEGAIPPSKVAYVA 283 (359)
Q Consensus 205 ~gie~a~~aGv~~V~i~~s~S~~~~~~n~~~t~~e~l~~i~~~i~~Ak~~G~~-V~~~is~~fg~~~~~r~~~e~l~~~a 283 (359)
+-++...++|+.+|.+.+..=+.-..+.+|+.- ..+....+++.+++.|+. +...++ +|.|.. +.+.+.+-.
T Consensus 138 e~~~~l~~~GvNRiSlGVQsf~~~~lk~lgR~h--~~~~~~~a~~~~~~~g~~~in~DLI--yglP~Q---T~~~~~~~l 210 (416)
T COG0635 138 EKFKALKEAGVNRISLGVQSFNDEVLKALGRIH--DEEEAKEAVELARKAGFTSINIDLI--YGLPGQ---TLESLKEDL 210 (416)
T ss_pred HHHHHHHHcCCCEEEeccccCCHHHHHHhcCCC--CHHHHHHHHHHHHHcCCCcEEEEee--cCCCCC---CHHHHHHHH
Confidence 345666778999988876543333344566532 234556778888888885 555554 777753 778888899
Q ss_pred HHHHHCCcCEEEE
Q 018252 284 KELHDMGCFEISL 296 (359)
Q Consensus 284 ~~l~~~Gad~I~L 296 (359)
+.+.++++++|++
T Consensus 211 ~~a~~l~pdhis~ 223 (416)
T COG0635 211 EQALELGPDHLSL 223 (416)
T ss_pred HHHHhCCCCEEEE
Confidence 9999999998775
No 400
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=89.03 E-value=11 Score=39.78 Aligned_cols=141 Identities=16% Similarity=0.165 Sum_probs=75.6
Q ss_pred CCCCCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcCCCCC-HHHHHHHhhh-cCC-CeEEEE-eCChHhHHHHHHcCCCE
Q 018252 142 KNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLAD-ARDVMEAVRD-LEG-ARLPVL-TPNLKGFEAAIAAGAKE 217 (359)
Q Consensus 142 ~~~~~~~~k~~ia~~L~~aGv~~IEvG~fvspk~vPq~~D-~~ev~~~l~~-~~~-~~l~~l-~~n~~gie~a~~aGv~~ 217 (359)
+..+.+++-.+.++.|.++|++.||+.. ++. ..+ .-+.++.++. .++ +.+.+= +-+.++.+.++++|++-
T Consensus 235 ~~av~~~~~~~ra~~Lv~aGvd~i~vd~--a~g----~~~~~~~~i~~ir~~~~~~~~V~aGnV~t~e~a~~li~aGAd~ 308 (502)
T PRK07107 235 GAGINTRDYAERVPALVEAGADVLCIDS--SEG----YSEWQKRTLDWIREKYGDSVKVGAGNVVDREGFRYLAEAGADF 308 (502)
T ss_pred eeccChhhHHHHHHHHHHhCCCeEeecC--ccc----ccHHHHHHHHHHHHhCCCCceEEeccccCHHHHHHHHHcCCCE
Confidence 3455666778999999999999999983 221 011 1223344443 342 333221 23568899999999999
Q ss_pred EEEecCCchH-HHHhhhc--CCHHHHHHHHHHHH-HHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHHCCcCE
Q 018252 218 VAIFASASEA-FSKSNIN--CSIEDSLVRYRAVA-HAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFE 293 (359)
Q Consensus 218 V~i~~s~S~~-~~~~n~~--~t~~e~l~~i~~~i-~~Ak~~G~~V~~~is~~fg~~~~~r~~~e~l~~~a~~l~~~Gad~ 293 (359)
|.+-...--+ -.+.+.+ ...-.++..+.+++ +++++.|..+. |. + |++--. --+++|++. +|||.
T Consensus 309 I~vg~g~Gs~c~tr~~~~~g~~~~~ai~~~~~a~~~~~~~~g~~~~--vi-a----dgGir~---~gdi~KAla-~GA~~ 377 (502)
T PRK07107 309 VKVGIGGGSICITREQKGIGRGQATALIEVAKARDEYFEETGVYIP--IC-S----DGGIVY---DYHMTLALA-MGADF 377 (502)
T ss_pred EEECCCCCcCcccccccCCCccHHHHHHHHHHHHHHHHhhcCCcce--EE-E----cCCCCc---hhHHHHHHH-cCCCe
Confidence 8875432211 1111233 33333344343333 24455674321 11 1 334222 235666554 89998
Q ss_pred EEEcCC
Q 018252 294 ISLGDT 299 (359)
Q Consensus 294 I~L~DT 299 (359)
+.+.-.
T Consensus 378 vm~G~~ 383 (502)
T PRK07107 378 IMLGRY 383 (502)
T ss_pred eeeChh
Confidence 877653
No 401
>PRK05835 fructose-bisphosphate aldolase; Provisional
Probab=89.02 E-value=6.4 Score=38.98 Aligned_cols=94 Identities=11% Similarity=0.018 Sum_probs=68.3
Q ss_pred HHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHHCCcCE-EEEcCCC-CCCcHHHHHHHHHHHHHhCCC
Q 018252 244 YRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFE-ISLGDTI-GVGTPGTVVPMLEAVMAVVPV 321 (359)
Q Consensus 244 i~~~i~~Ak~~G~~V~~~is~~fg~~~~~r~~~e~l~~~a~~l~~~Gad~-I~L~DT~-G~~~P~~v~~lv~~l~~~~p~ 321 (359)
++++++.|++.|+-|- +|. -++.+.+..+++.+.+.+... |.+.... ..+.+..+..++..+.+..+.
T Consensus 5 ~k~lL~~A~~~~yaV~-----AfN-----~~n~e~~~avi~AAe~~~sPvIlq~s~~~~~~~g~~~~~~~~~~~a~~~~~ 74 (307)
T PRK05835 5 GNEILLKAHKEGYGVG-----AFN-----FVNFEMLNAIFEAGNEENSPLFIQASEGAIKYMGIDMAVGMVKIMCERYPH 74 (307)
T ss_pred HHHHHHHHHHCCceEE-----EEE-----ECCHHHHHHHHHHHHHHCCCEEEEcCccHHhhCChHHHHHHHHHHHHhcCC
Confidence 5678889999998762 343 258889999999999988764 4443322 233455667777777777765
Q ss_pred ceEEEEeCCCCCcHHHHHHHHHHcCCCE
Q 018252 322 EKLAVHLHDTYGQSLPNILISLQVSPMH 349 (359)
Q Consensus 322 ~~L~~H~HNd~GLAlANalaAv~AGa~~ 349 (359)
+|+.+|. |-|.-...+..|+++|.+-
T Consensus 75 VPValHL--DHg~~~e~i~~ai~~GftS 100 (307)
T PRK05835 75 IPVALHL--DHGTTFESCEKAVKAGFTS 100 (307)
T ss_pred CeEEEEC--CCCCCHHHHHHHHHcCCCE
Confidence 6787664 7788899999999999874
No 402
>PRK06096 molybdenum transport protein ModD; Provisional
Probab=88.98 E-value=22 Score=34.85 Aligned_cols=129 Identities=10% Similarity=-0.004 Sum_probs=77.8
Q ss_pred ChHhH-HHHHHcCCCEEEEecCCchHHHHhhhcCCHHHHHHHHHHHHHHHHhCC--CcEEEEEeeeecCCCCCCCCHHHH
Q 018252 203 NLKGF-EAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLS--IPVRGYVSCVVGCPVEGAIPPSKV 279 (359)
Q Consensus 203 n~~gi-e~a~~aGv~~V~i~~s~S~~~~~~n~~~t~~e~l~~i~~~i~~Ak~~G--~~V~~~is~~fg~~~~~r~~~e~l 279 (359)
..+-+ +.|+.+|-...|-+--...+..+.|+-. .....+.+...++.+|+.. .++. |. . .+.+
T Consensus 135 g~R~l~k~AV~~GGg~~HR~gLsd~vLikdNHi~-~~g~~~~i~~av~~~r~~~~~~kIe--VE--v-------~tle-- 200 (284)
T PRK06096 135 GTRLLATQAVLAAGGLIHRAGCAETILLFANHRH-FLHDPQDWSGAINQLRRHAPEKKIV--VE--A-------DTPK-- 200 (284)
T ss_pred chhHHHHHHHHcCCCcCccCCcchhhhhHHHHHH-HhCCcccHHHHHHHHHHhCCCCCEE--EE--C-------CCHH--
Confidence 34444 4677777554443222222344444310 0000113456666666652 3332 22 1 1333
Q ss_pred HHHHHHHHHCCcCEEEEcCCCCCCcHHHHHHHHHHHHHhCCCceEEEEeCCCCCcHHHHHHHHHHcCCCEEeceee
Q 018252 280 AYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQVSPMHAKPCFT 355 (359)
Q Consensus 280 ~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~lv~~l~~~~p~~~L~~H~HNd~GLAlANalaAv~AGa~~ID~tl~ 355 (359)
-++++.++|+|.|-| .-++|+++.+.++.+++..|.+.+++=+ |.-..|+-+=...|+|+|-++-+
T Consensus 201 --qa~ea~~agaDiI~L----Dn~~~e~l~~av~~~~~~~~~~~leaSG----GI~~~ni~~yA~tGvD~Is~gal 266 (284)
T PRK06096 201 --EAIAALRAQPDVLQL----DKFSPQQATEIAQIAPSLAPHCTLSLAG----GINLNTLKNYADCGIRLFITSAP 266 (284)
T ss_pred --HHHHHHHcCCCEEEE----CCCCHHHHHHHHHHhhccCCCeEEEEEC----CCCHHHHHHHHhcCCCEEEECcc
Confidence 445566799999988 4679999999999887656666777755 66688999999999999966543
No 403
>PRK05826 pyruvate kinase; Provisional
Probab=88.94 E-value=28 Score=36.41 Aligned_cols=156 Identities=15% Similarity=0.177 Sum_probs=94.9
Q ss_pred CCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcCCCCCHHHHHHHhhhc-C-CCeEEEEeCChHhHH---HHHHcCCCEEE
Q 018252 145 VPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDL-E-GARLPVLTPNLKGFE---AAIAAGAKEVA 219 (359)
Q Consensus 145 ~~~~~k~~ia~~L~~aGv~~IEvG~fvspk~vPq~~D~~ev~~~l~~~-~-~~~l~~l~~n~~gie---~a~~aGv~~V~ 219 (359)
++..++..| +...+.|++.|=+-+ +.. ..|..++.+.+... . .+.+.+-+.+.++++ ..++. +|.|.
T Consensus 171 lte~D~~~i-~~ald~g~d~I~~sf-V~s-----aedv~~l~~~l~~~~~~~~~iiakIEt~eav~nldeI~~~-~DgIm 242 (465)
T PRK05826 171 LTEKDKADI-KFAAEQGVDYIAVSF-VRS-----AEDVEEARRLLREAGCPHAKIIAKIERAEAVDNIDEIIEA-SDGIM 242 (465)
T ss_pred CChhhHHHH-HHHHHCCCCEEEECC-CCC-----HHHHHHHHHHHHHcCCcCceEEEEEcCHHHHHhHHHHHHH-cCEEE
Confidence 445555554 566688999997665 321 24555565665543 2 566666676665554 33444 56555
Q ss_pred EecCCchHHHHhhhcCCHHHHHHHHHHHHHHHHhCCCcEEEE--E--eeeecCCCCCCCCHHHHHHHHHHHHHCCcCEEE
Q 018252 220 IFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGY--V--SCVVGCPVEGAIPPSKVAYVAKELHDMGCFEIS 295 (359)
Q Consensus 220 i~~s~S~~~~~~n~~~t~~e~l~~i~~~i~~Ak~~G~~V~~~--i--s~~fg~~~~~r~~~e~l~~~a~~l~~~Gad~I~ 295 (359)
+ .-.|+=.. ++ .++.....+.+++.|+++|..+... + ||. .+| +-+..++.+++.++.+ |+|.|.
T Consensus 243 I--grgDLg~e--lg--~~~v~~~qk~Ii~~c~~~gKpvi~ATqmLeSM~-~~p---~PTRAEvsDVanav~d-G~D~vm 311 (465)
T PRK05826 243 V--ARGDLGVE--IP--DEEVPGLQKKIIRKAREAGKPVITATQMLESMI-ENP---RPTRAEVSDVANAVLD-GTDAVM 311 (465)
T ss_pred E--Ccchhhhh--cC--cHhHHHHHHHHHHHHHHcCCCEEEECHHHHHHh-hCC---CCchhhhhhHHHHHHc-CCcEEE
Confidence 4 22222111 12 4556666789999999999987421 0 001 122 3355677778887765 999999
Q ss_pred Ec-CCCCCCcHHHHHHHHHHHHHhC
Q 018252 296 LG-DTIGVGTPGTVVPMLEAVMAVV 319 (359)
Q Consensus 296 L~-DT~G~~~P~~v~~lv~~l~~~~ 319 (359)
|. -|+=-..|.+..+.+..+....
T Consensus 312 LS~ETA~G~yPveaV~~m~~I~~~a 336 (465)
T PRK05826 312 LSGETAAGKYPVEAVEAMARICKGA 336 (465)
T ss_pred eccccccCcCHHHHHHHHHHHHHHH
Confidence 96 5666678999888887777643
No 404
>PRK09195 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=88.90 E-value=5.5 Score=38.93 Aligned_cols=95 Identities=11% Similarity=0.065 Sum_probs=68.8
Q ss_pred HHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHHCCcC-EEEEcCC-CCCCcHHHHHHHHHHHHHhCC
Q 018252 243 RYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCF-EISLGDT-IGVGTPGTVVPMLEAVMAVVP 320 (359)
Q Consensus 243 ~i~~~i~~Ak~~G~~V~~~is~~fg~~~~~r~~~e~l~~~a~~l~~~Gad-~I~L~DT-~G~~~P~~v~~lv~~l~~~~p 320 (359)
.++++++.|++.++-|- +|. -++.+.+..+++.+.+.+.. .|.+... ...+....+..++..+.+..+
T Consensus 5 ~~k~il~~A~~~~yaV~-----AfN-----~~n~e~~~avi~AAee~~sPvIiq~~~~~~~~~g~~~~~~~~~~~A~~~~ 74 (284)
T PRK09195 5 STKQMLNNAQRGGYAVP-----AFN-----IHNLETMQVVVETAAELHSPVIIAGTPGTFSYAGTEYLLAIVSAAAKQYH 74 (284)
T ss_pred cHHHHHHHHHHcCceEE-----EEE-----eCCHHHHHHHHHHHHHhCCCEEEEcChhHHhhCCHHHHHHHHHHHHHHCC
Confidence 35678889999998762 343 24778999999999998865 4555442 233444567778887777765
Q ss_pred CceEEEEeCCCCCcHHHHHHHHHHcCCCEE
Q 018252 321 VEKLAVHLHDTYGQSLPNILISLQVSPMHA 350 (359)
Q Consensus 321 ~~~L~~H~HNd~GLAlANalaAv~AGa~~I 350 (359)
+|+.+|. |-|.-+..+..|+++|.+-|
T Consensus 75 -VPV~lHL--DHg~~~e~i~~Ai~~GftSV 101 (284)
T PRK09195 75 -HPLALHL--DHHEKFDDIAQKVRSGVRSV 101 (284)
T ss_pred -CCEEEEC--CCCCCHHHHHHHHHcCCCEE
Confidence 5777654 77778999999999998743
No 405
>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism.
Probab=88.87 E-value=3.1 Score=40.53 Aligned_cols=81 Identities=15% Similarity=0.060 Sum_probs=65.2
Q ss_pred CCCCHHHHHHHHHHHHHCCcCEEEEcCCCCCCc---HHHHHHHHHHHHHhCC-CceEEEEe-CCCCCcHHHHHHHHHHcC
Q 018252 272 GAIPPSKVAYVAKELHDMGCFEISLGDTIGVGT---PGTVVPMLEAVMAVVP-VEKLAVHL-HDTYGQSLPNILISLQVS 346 (359)
Q Consensus 272 ~r~~~e~l~~~a~~l~~~Gad~I~L~DT~G~~~---P~~v~~lv~~l~~~~p-~~~L~~H~-HNd~GLAlANalaAv~AG 346 (359)
+..|.+.+.++++.+.+.|++-|.+.-|.|=.. -++-.++++.+.+... .++|-+|. +++.--++..+..|.++|
T Consensus 16 g~iD~~~l~~lv~~~~~~Gv~gi~v~GstGE~~~Ls~~Er~~l~~~~~~~~~g~~pvi~gv~~~~t~~ai~~a~~A~~~G 95 (294)
T TIGR02313 16 GDIDEEALRELIEFQIEGGSHAISVGGTSGEPGSLTLEERKQAIENAIDQIAGRIPFAPGTGALNHDETLELTKFAEEAG 95 (294)
T ss_pred CCcCHHHHHHHHHHHHHcCCCEEEECccCcccccCCHHHHHHHHHHHHHHhCCCCcEEEECCcchHHHHHHHHHHHHHcC
Confidence 579999999999999999999999999999654 5666666666666554 35666655 688888899999999999
Q ss_pred CCEEec
Q 018252 347 PMHAKP 352 (359)
Q Consensus 347 a~~ID~ 352 (359)
|+.|=.
T Consensus 96 ad~v~v 101 (294)
T TIGR02313 96 ADAAMV 101 (294)
T ss_pred CCEEEE
Confidence 998743
No 406
>TIGR01431 adm_rel adenosine deaminase-related growth factor. Members of this family have been described as secreted proteins with growth factor activity and regions of adenosine deaminase homology in insects, mollusks, and vertebrates.
Probab=88.86 E-value=19 Score=37.84 Aligned_cols=143 Identities=12% Similarity=-0.012 Sum_probs=87.4
Q ss_pred HHHHHHcCCCEEEEecCCchHHHHhhhcCCHHHHHHHHHHHHHHHHhCCC-cEEEEEeeeecCCCCCC-CCHHHHHHHHH
Q 018252 207 FEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSI-PVRGYVSCVVGCPVEGA-IPPSKVAYVAK 284 (359)
Q Consensus 207 ie~a~~aGv~~V~i~~s~S~~~~~~n~~~t~~e~l~~i~~~i~~Ak~~G~-~V~~~is~~fg~~~~~r-~~~e~l~~~a~ 284 (359)
++.+.+-|+..+-+...-...+.....+.+.++.++.+.+.++.+++.+- .+.+.+. +.. .| .+++...+.++
T Consensus 203 l~d~~~DgV~Y~ElR~~p~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~fi~~rlI--~~~---~R~~~~~~~~~~~~ 277 (479)
T TIGR01431 203 LEEFYADNVQYLELRSTLFILYELEGTSHDEEDSVRIYKEVTEKFMAEHPDFIGSKLI--YSP---LRNKDKEELDNYIK 277 (479)
T ss_pred HHHHHHcCCEEEEEEecCchHhhcCCCCCCHHHHHHHHHHHHHHHHHhCCCCeEEEEE--EEc---cCCCCHHHHHHHHH
Confidence 45566678887666554334444433445788899999888888876542 1333333 222 13 47777666666
Q ss_pred HHHHC---CcCEEEEcCCCCCC----cHHHHHHHHHHHHHhCCCceEEEEeCCCCCcH---HHHHHHHHHcCCCEEecee
Q 018252 285 ELHDM---GCFEISLGDTIGVG----TPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQS---LPNILISLQVSPMHAKPCF 354 (359)
Q Consensus 285 ~l~~~---Gad~I~L~DT~G~~----~P~~v~~lv~~l~~~~p~~~L~~H~HNd~GLA---lANalaAv~AGa~~ID~tl 354 (359)
.+.++ -.+.|.=-|-+|-= .|..+.+.+..+.+. .++++-+|+=-+.+.| -.|...|+..|+++|.=.+
T Consensus 278 ~a~~~k~~~p~~vvGfDL~G~E~~g~pl~~f~~~~~~~~~~-~gl~~t~HAGE~~~~g~~~d~nl~dAIlLg~~RIGHG~ 356 (479)
T TIGR01431 278 VAMELKEKYPDFVAGFDLVGQEDKGRSLLDFIDALLGPSDK-EKLPYFFHAGETNWQGTTVDENLIDALLLNTTRIGHGF 356 (479)
T ss_pred HHHHHHhhCCCeEEEEeccCCCCCCCCHHHHHHHHHHHHHh-CCCCEEEecCCcCCCCCCchhHHHHHHHcCCccccCcc
Confidence 66543 23333333666632 345555555544443 3478999998776433 4799999999999997555
Q ss_pred e
Q 018252 355 T 355 (359)
Q Consensus 355 ~ 355 (359)
.
T Consensus 357 ~ 357 (479)
T TIGR01431 357 A 357 (479)
T ss_pred c
Confidence 4
No 407
>cd00288 Pyruvate_Kinase Pyruvate kinase (PK): Large allosteric enzyme that regulates glycolysis through binding of the substrate, phosphoenolpyruvate, and one or more allosteric effectors. Like other allosteric enzymes, PK has a high substrate affinity R state and a low affinity T state. PK exists as several different isozymes, depending on organism and tissue type. In mammals, there are four PK isozymes: R, found in red blood cells, L, found in liver, M1, found in skeletal muscle, and M2, found in kidney, adipose tissue, and lung. PK forms a homotetramer, with each subunit containing three domains. The T state to R state transition of PK is more complex than in most allosteric enzymes, involving a concerted rotation of all 3 domains of each monomer in the homotetramer.
Probab=88.80 E-value=31 Score=36.25 Aligned_cols=157 Identities=16% Similarity=0.187 Sum_probs=96.5
Q ss_pred CCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcCCCCCHHHHHHHhhhc-CCCeEEEEeCChHhHH---HHHHcCCCEEEE
Q 018252 145 VPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDL-EGARLPVLTPNLKGFE---AAIAAGAKEVAI 220 (359)
Q Consensus 145 ~~~~~k~~ia~~L~~aGv~~IEvG~fvspk~vPq~~D~~ev~~~l~~~-~~~~l~~l~~n~~gie---~a~~aGv~~V~i 220 (359)
++..++. -++.-.+.|+|.|-+.|--++ .|-.+++..+... .++.+.+-+.+..+++ ..++. +|.|.+
T Consensus 172 ltekD~~-di~f~~~~~vD~ia~SFV~~~------~di~~~r~~l~~~~~~~~iiakIEt~~av~nldeI~~~-~DgImI 243 (480)
T cd00288 172 LSEKDKA-DLRFGVEQGVDMIFASFVRKA------SDVLEIREVLGEKGKDIKIIAKIENQEGVNNFDEILEA-SDGIMV 243 (480)
T ss_pred CCHHHHH-HHHHHHHcCCCEEEECCCCCH------HHHHHHHHHHHhcCCCceEEEEECCHHHHHhHHHHHHh-cCEEEE
Confidence 4454544 455777889999987753222 4556666666543 3455666666665544 44444 565544
Q ss_pred ecCCchHHHHhhhcCCHHHHHHHHHHHHHHHHhCCCcEEE--EEeee-ecCCCCCCCCHHHHHHHHHHHHHCCcCEEEE-
Q 018252 221 FASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRG--YVSCV-VGCPVEGAIPPSKVAYVAKELHDMGCFEISL- 296 (359)
Q Consensus 221 ~~s~S~~~~~~n~~~t~~e~l~~i~~~i~~Ak~~G~~V~~--~is~~-fg~~~~~r~~~e~l~~~a~~l~~~Gad~I~L- 296 (359)
.-.|+=.. + ..++.....+++++.|+++|..+.. .+... ..+| +-+..++.+++..+.+ |+|.|-|
T Consensus 244 --argDLg~e--~--g~~~v~~~qk~ii~~~~~~gkpvi~ATqmLeSM~~~p---~PTRAEvtDVanav~d-G~D~vmLS 313 (480)
T cd00288 244 --ARGDLGVE--I--PAEEVFLAQKMLIAKCNLAGKPVITATQMLESMIYNP---RPTRAEVSDVANAVLD-GTDCVMLS 313 (480)
T ss_pred --Ccchhhhh--c--ChHHHHHHHHHHHHHHHHcCCCEEEEchhHHHHhhCC---CCCchhhHHHHHHHHh-CCcEEEEe
Confidence 22232211 2 2567777788999999999998732 11100 0122 2355577778887776 9999999
Q ss_pred cCCCCCCcHHHHHHHHHHHHHhC
Q 018252 297 GDTIGVGTPGTVVPMLEAVMAVV 319 (359)
Q Consensus 297 ~DT~G~~~P~~v~~lv~~l~~~~ 319 (359)
+-|+=--.|.+..+.+..+.+..
T Consensus 314 ~ETa~G~yPveaV~~m~~I~~~a 336 (480)
T cd00288 314 GETAKGKYPVEAVKAMARICLEA 336 (480)
T ss_pred chhcCCCCHHHHHHHHHHHHHHH
Confidence 55666667988888887777643
No 408
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=88.76 E-value=4.1 Score=37.44 Aligned_cols=46 Identities=30% Similarity=0.464 Sum_probs=28.3
Q ss_pred CHHHHHHHHHHHHHCCcCEEEEc----------CCCCCC---cHHHHHHHHHHHHHhCC
Q 018252 275 PPSKVAYVAKELHDMGCFEISLG----------DTIGVG---TPGTVVPMLEAVMAVVP 320 (359)
Q Consensus 275 ~~e~l~~~a~~l~~~Gad~I~L~----------DT~G~~---~P~~v~~lv~~l~~~~p 320 (359)
+++.+.+.++.+.++|+|.|.|- |-.|.. .|..+.++++++++..+
T Consensus 65 ~~~~~~~aa~~~~~aG~d~ieln~g~p~~~~~~~~~G~~l~~~~~~~~eii~~v~~~~~ 123 (231)
T cd02801 65 DPETLAEAAKIVEELGADGIDLNMGCPSPKVTKGGAGAALLKDPELVAEIVRAVREAVP 123 (231)
T ss_pred CHHHHHHHHHHHHhcCCCEEEEeCCCCHHHHhCCCeeehhcCCHHHHHHHHHHHHHhcC
Confidence 56666777777777777766653 223322 56666677777766654
No 409
>TIGR03581 EF_0839 conserved hypothetical protein EF_0839/AHA_3917. Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.
Probab=88.76 E-value=5.6 Score=37.55 Aligned_cols=86 Identities=20% Similarity=0.196 Sum_probs=64.2
Q ss_pred HHHcCCCEEEEecCCchHHHHhhhcCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHHC
Q 018252 210 AIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDM 289 (359)
Q Consensus 210 a~~aGv~~V~i~~s~S~~~~~~n~~~t~~e~l~~i~~~i~~Ak~~G~~V~~~is~~fg~~~~~r~~~e~l~~~a~~l~~~ 289 (359)
..+.|...|.+|-= -|. ..+++++.+++.|.++|+.+ +-.+-.+.+.+.++.+.+.++
T Consensus 144 l~dmG~~SiKffPM---------~Gl---~~leE~~avA~aca~~g~~l----------EPTGGIdl~Nf~~I~~i~lda 201 (236)
T TIGR03581 144 LKDMGGSSVKFFPM---------GGL---KHLEEYAAVAKACAKHGFYL----------EPTGGIDLDNFEEIVQIALDA 201 (236)
T ss_pred HHHcCCCeeeEeec---------CCc---ccHHHHHHHHHHHHHcCCcc----------CCCCCccHHhHHHHHHHHHHc
Confidence 34469999988731 111 23677888889999999853 334668999999999999999
Q ss_pred CcCEE-------EEcCCCCCCcHHHHHHHHHHHHH
Q 018252 290 GCFEI-------SLGDTIGVGTPGTVVPMLEAVMA 317 (359)
Q Consensus 290 Gad~I-------~L~DT~G~~~P~~v~~lv~~l~~ 317 (359)
|+..| .|--..|-..|++|++++..+++
T Consensus 202 Gv~kviPHIYssiIDk~tG~TrpedV~~l~~~~k~ 236 (236)
T TIGR03581 202 GVEKVIPHVYSSIIDKETGNTRVEDVKQLLAIVKK 236 (236)
T ss_pred CCCeeccccceeccccccCCCCHHHHHHHHHHhhC
Confidence 98743 23346788999999999998763
No 410
>cd02911 arch_FMN Archeal FMN-binding domain. This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown.
Probab=88.75 E-value=13 Score=35.03 Aligned_cols=99 Identities=10% Similarity=-0.007 Sum_probs=62.7
Q ss_pred HHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHHCCcCEEEE--cC------CCCCC-----cHHHHHH
Q 018252 244 YRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISL--GD------TIGVG-----TPGTVVP 310 (359)
Q Consensus 244 i~~~i~~Ak~~G~~V~~~is~~fg~~~~~r~~~e~l~~~a~~l~~~Gad~I~L--~D------T~G~~-----~P~~v~~ 310 (359)
+...+..+++.+..+.++|. | .+++.+.+.++.+.+. ++.|.| .= ..|.+ .|+.+.+
T Consensus 61 ~~~~~~~~~~~~~p~~vqi~---g------~~~~~~~~aa~~~~~~-~~~ielN~gCP~~~v~~~g~G~~Ll~~p~~l~e 130 (233)
T cd02911 61 IEGEIKALKDSNVLVGVNVR---S------SSLEPLLNAAALVAKN-AAILEINAHCRQPEMVEAGAGEALLKDPERLSE 130 (233)
T ss_pred HHHHHHHhhccCCeEEEEec---C------CCHHHHHHHHHHHhhc-CCEEEEECCCCcHHHhcCCcchHHcCCHHHHHH
Confidence 34445555666766655553 2 4789999999988774 465544 21 12323 3999999
Q ss_pred HHHHHHHhCCCceEEEEeCCCC-CcHHHHHHHHHHcCCCEEecee
Q 018252 311 MLEAVMAVVPVEKLAVHLHDTY-GQSLPNILISLQVSPMHAKPCF 354 (359)
Q Consensus 311 lv~~l~~~~p~~~L~~H~HNd~-GLAlANalaAv~AGa~~ID~tl 354 (359)
+++++++. ++++.+-.-=.. --.+.-+..+.++|++.||+.-
T Consensus 131 iv~avr~~--~~pVsvKir~g~~~~~~~la~~l~~aG~d~ihv~~ 173 (233)
T cd02911 131 FIKALKET--GVPVSVKIRAGVDVDDEELARLIEKAGADIIHVDA 173 (233)
T ss_pred HHHHHHhc--CCCEEEEEcCCcCcCHHHHHHHHHHhCCCEEEECc
Confidence 99999973 355665432111 3355566677799999998753
No 411
>PRK06801 hypothetical protein; Provisional
Probab=88.73 E-value=7 Score=38.23 Aligned_cols=95 Identities=7% Similarity=-0.009 Sum_probs=71.3
Q ss_pred HHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHHCCcC-EEEEcCCCC-CCcHHHHHHHHHHHHHhCC
Q 018252 243 RYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCF-EISLGDTIG-VGTPGTVVPMLEAVMAVVP 320 (359)
Q Consensus 243 ~i~~~i~~Ak~~G~~V~~~is~~fg~~~~~r~~~e~l~~~a~~l~~~Gad-~I~L~DT~G-~~~P~~v~~lv~~l~~~~p 320 (359)
.++++++.|++.|+-|- +|. -.+.+.+..+++.+.+.+.. .|.+....- ...+..+..++..+.++.+
T Consensus 5 ~~~~~l~~A~~~~yaV~-----Afn-----~~n~e~~~avi~AAe~~~~PvIl~~~~~~~~~~~~~~~~~~~~~~a~~~~ 74 (286)
T PRK06801 5 SLANGLAHARKHGYALG-----AFN-----VLDSHFLRALFAAAKQERSPFIINIAEVHFKYISLESLVEAVKFEAARHD 74 (286)
T ss_pred cHHHHHHHHHHCCceEE-----EEe-----eCCHHHHHHHHHHHHHHCCCEEEEeCcchhhcCCHHHHHHHHHHHHHHCC
Confidence 35688899999999773 343 25888999999999998866 455544332 3455778888888888775
Q ss_pred CceEEEEeCCCCCcHHHHHHHHHHcCCCEE
Q 018252 321 VEKLAVHLHDTYGQSLPNILISLQVSPMHA 350 (359)
Q Consensus 321 ~~~L~~H~HNd~GLAlANalaAv~AGa~~I 350 (359)
+|+.+|. |-|.-+..+..|+++|++.|
T Consensus 75 -vpV~lHl--DH~~~~e~i~~Ai~~GftSV 101 (286)
T PRK06801 75 -IPVVLNL--DHGLHFEAVVRALRLGFSSV 101 (286)
T ss_pred -CCEEEEC--CCCCCHHHHHHHHHhCCcEE
Confidence 5888776 55777899999999999865
No 412
>COG0274 DeoC Deoxyribose-phosphate aldolase [Nucleotide transport and metabolism]
Probab=88.73 E-value=5.4 Score=37.78 Aligned_cols=94 Identities=21% Similarity=0.173 Sum_probs=67.5
Q ss_pred EeeeecCCCCCCCCHHHHHHHHHHHHHCCcCEEEEcCCCCCCc---HHHHHHHHHHHHHhCCC-----ceEEEEeCCCCC
Q 018252 262 VSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGVGT---PGTVVPMLEAVMAVVPV-----EKLAVHLHDTYG 333 (359)
Q Consensus 262 is~~fg~~~~~r~~~e~l~~~a~~l~~~Gad~I~L~DT~G~~~---P~~v~~lv~~l~~~~p~-----~~L~~H~HNd~G 333 (359)
++.+.|.|.+.- +.+-=+.-++++.+.|||+|-+.=..|... .+.|++-|+.+++..++ +.|+.=.=++.-
T Consensus 63 v~tVigFP~G~~-~t~~K~~Ea~~ai~~GAdEiDmVinig~~k~g~~~~V~~eI~~v~~a~~~~~~lKVIlEt~~Lt~ee 141 (228)
T COG0274 63 VCTVIGFPLGAN-TTAVKAAEAREAIENGADEIDMVINIGALKSGNWEAVEREIRAVVEACADAVVLKVILETGLLTDEE 141 (228)
T ss_pred EEEecCCCCCCC-hHHHHHHHHHHHHHcCCCeeeeeeeHHHHhcCCHHHHHHHHHHHHHHhCCCceEEEEEeccccCHHH
Confidence 355677776543 334334456778889999999988888654 66777778888877654 345555555666
Q ss_pred cHHHHHHHHHHcCCCEEeceeeec
Q 018252 334 QSLPNILISLQVSPMHAKPCFTFA 357 (359)
Q Consensus 334 LAlANalaAv~AGa~~ID~tl~~~ 357 (359)
+ ..-+..++++|||+|-+|.-|.
T Consensus 142 ~-~~A~~i~~~aGAdFVKTSTGf~ 164 (228)
T COG0274 142 K-RKACEIAIEAGADFVKTSTGFS 164 (228)
T ss_pred H-HHHHHHHHHhCCCEEEcCCCCC
Confidence 6 6677889999999999998664
No 413
>TIGR00167 cbbA ketose-bisphosphate aldolases. fructose-bisphosphate and tagatose-bisphosphate aldolase.
Probab=88.72 E-value=5.7 Score=38.88 Aligned_cols=96 Identities=14% Similarity=0.122 Sum_probs=68.6
Q ss_pred HHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHHCCcCE-EEEcCC-CCC-CcHHHHHHHHHHHHHhC
Q 018252 243 RYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFE-ISLGDT-IGV-GTPGTVVPMLEAVMAVV 319 (359)
Q Consensus 243 ~i~~~i~~Ak~~G~~V~~~is~~fg~~~~~r~~~e~l~~~a~~l~~~Gad~-I~L~DT-~G~-~~P~~v~~lv~~l~~~~ 319 (359)
.++++++.|++.|+-|- +|.+ ++.+.+..+++.+.+.+... |.+... ... ..+..+..++..+.++.
T Consensus 5 ~~k~iL~~A~~~~yAV~-----AfN~-----~n~e~~~avi~AAee~~sPvIlq~~~~~~~~~~g~~~~~~~~~~~a~~~ 74 (288)
T TIGR00167 5 DVKELLQDAKEEGYAIP-----AFNI-----NNLETINAVLEAAAEEKSPVIIQFSNGAAKYIAGLGAISAMVKAMSEAY 74 (288)
T ss_pred cHHHHHHHHHHCCceEE-----EEEE-----CCHHHHHHHHHHHHHHCCCEEEECCcchhhccCCHHHHHHHHHHHHHhc
Confidence 46788899999999773 3433 47889999999999988764 444332 122 33667777777777665
Q ss_pred C-CceEEEEeCCCCCcHHHHHHHHHHcCCCEE
Q 018252 320 P-VEKLAVHLHDTYGQSLPNILISLQVSPMHA 350 (359)
Q Consensus 320 p-~~~L~~H~HNd~GLAlANalaAv~AGa~~I 350 (359)
+ .+|+.+|. |-|.....+..|+++|.+-|
T Consensus 75 ~~~VPV~lHL--DHg~~~e~i~~ai~~GftSV 104 (288)
T TIGR00167 75 PYGVPVALHL--DHGASEEDCAQAVKAGFSSV 104 (288)
T ss_pred cCCCcEEEEC--CCCCCHHHHHHHHHcCCCEE
Confidence 2 35777654 77778899999999998754
No 414
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=88.67 E-value=11 Score=36.40 Aligned_cols=43 Identities=16% Similarity=0.050 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHCCcCEEEEcCCC-CCCcHHHHHHHHHHHHHhC
Q 018252 277 SKVAYVAKELHDMGCFEISLGDTI-GVGTPGTVVPMLEAVMAVV 319 (359)
Q Consensus 277 e~l~~~a~~l~~~Gad~I~L~DT~-G~~~P~~v~~lv~~l~~~~ 319 (359)
+...++++.+.++|+|.+.+.=.. -..+++.+.+.++.+.+..
T Consensus 81 ~~~i~~a~~a~~~Gad~v~~~pP~y~~~~~~~i~~~f~~v~~~~ 124 (289)
T cd00951 81 ATAIAYAQAAEKAGADGILLLPPYLTEAPQEGLYAHVEAVCKST 124 (289)
T ss_pred HHHHHHHHHHHHhCCCEEEECCCCCCCCCHHHHHHHHHHHHhcC
Confidence 445555555555555544432222 1223445555555555443
No 415
>PRK14333 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=88.63 E-value=19 Score=37.21 Aligned_cols=144 Identities=16% Similarity=0.217 Sum_probs=81.8
Q ss_pred CCCHHHHHHHHHHHHhCCCCEEEEecc---C---C-CCCcCC---CCCHHHHHHHhhhcCCC-eEEEEeCCh-----HhH
Q 018252 144 TVPTGVKVELIRRLVSSGLPVVEATSF---V---S-PKWVPQ---LADARDVMEAVRDLEGA-RLPVLTPNL-----KGF 207 (359)
Q Consensus 144 ~~~~~~k~~ia~~L~~aGv~~IEvG~f---v---s-pk~vPq---~~D~~ev~~~l~~~~~~-~l~~l~~n~-----~gi 207 (359)
..+.+..++=++.|.+.|++.|-+... . . +...|. ..+..++++.+.+.++. ++.....+. +-+
T Consensus 176 sr~~e~V~~Ei~~l~~~g~kei~l~~~~~~~yg~d~~~~~p~~~~~~~l~~Ll~~i~~~~~~~rir~~~~~p~~~~~eli 255 (448)
T PRK14333 176 SRTPEAIRAEIEELAAQGYKEITLLGQNIDAYGRDLPGTTPEGRHQHTLTDLLYYIHDVEGIERIRFATSHPRYFTERLI 255 (448)
T ss_pred ccCHHHHHHHHHHHHHCCCcEEEEEecccchhcCCCCCccccccccccHHHHHHHHHhcCCCeEEEECCCChhhhhHHHH
Confidence 457788888888899999999866421 0 0 000111 12455566666665554 232222221 224
Q ss_pred HHHHHc--CCCEEEEec-CCchHHHHhhhcCCHHHHHHHHHHHHHHHHhC--CCcEEEEEeeeecCCCCCCCCHHHHHHH
Q 018252 208 EAAIAA--GAKEVAIFA-SASEAFSKSNINCSIEDSLVRYRAVAHAAKVL--SIPVRGYVSCVVGCPVEGAIPPSKVAYV 282 (359)
Q Consensus 208 e~a~~a--Gv~~V~i~~-s~S~~~~~~n~~~t~~e~l~~i~~~i~~Ak~~--G~~V~~~is~~fg~~~~~r~~~e~l~~~ 282 (359)
+...+. ++..+++.+ +.|+--.+ .+|+.. ..+.+.++++.++++ |+.+.+++. +|.|.+ +.+.+.+.
T Consensus 256 ~~~~~~~~~~~~l~igiQSgsd~vLk-~m~R~~--t~e~~~~~i~~lr~~~p~i~i~~d~I--vGfPgE---T~edf~~t 327 (448)
T PRK14333 256 KACAELPKVCEHFHIPFQSGDNEILK-AMARGY--THEKYRRIIDKIREYMPDASISADAI--VGFPGE---TEAQFENT 327 (448)
T ss_pred HHHhcCCcccccccCCCccCCHHHHH-hcCCCC--CHHHHHHHHHHHHHhCCCcEEEeeEE--EECCCC---CHHHHHHH
Confidence 444343 467777754 44443332 355432 234566777888888 666777665 787765 55666667
Q ss_pred HHHHHHCCcCEEE
Q 018252 283 AKELHDMGCFEIS 295 (359)
Q Consensus 283 a~~l~~~Gad~I~ 295 (359)
++.+.+.+.+.+.
T Consensus 328 l~~l~~~~~~~~~ 340 (448)
T PRK14333 328 LKLVEEIGFDQLN 340 (448)
T ss_pred HHHHHHcCCCEEe
Confidence 7777777776544
No 416
>PRK00115 hemE uroporphyrinogen decarboxylase; Validated
Probab=88.60 E-value=9.9 Score=37.66 Aligned_cols=147 Identities=15% Similarity=0.196 Sum_probs=77.0
Q ss_pred CCHHHHHHHHHHHHhCCCCEEEEec----cCCCCCcCCCC--CHHHHHHHhhhc-CCCeEEEEeCCh-HhHHHHHHcCCC
Q 018252 145 VPTGVKVELIRRLVSSGLPVVEATS----FVSPKWVPQLA--DARDVMEAVRDL-EGARLPVLTPNL-KGFEAAIAAGAK 216 (359)
Q Consensus 145 ~~~~~k~~ia~~L~~aGv~~IEvG~----fvspk~vPq~~--D~~ev~~~l~~~-~~~~l~~l~~n~-~gie~a~~aGv~ 216 (359)
+-++.-+++++++.++|++.|-++= ..+|+....+. -..++++.++.. ++..+..+|.+. .-++...+.|++
T Consensus 183 ~~t~~~~~~~~~~~eaGad~i~i~d~~~~~lsp~~f~ef~~P~~k~i~~~i~~~~~~~~ilh~cg~~~~~~~~~~~~~~~ 262 (346)
T PRK00115 183 KLADATIAYLNAQIEAGAQAVQIFDSWAGALSPADYREFVLPYMKRIVAELKREHPDVPVILFGKGAGELLEAMAETGAD 262 (346)
T ss_pred HHHHHHHHHHHHHHHcCCCEEEEecCccccCCHHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEcCCcHHHHHHHHhcCCC
Confidence 3455567788888899999996652 22322100000 001222222222 245566667643 457777778888
Q ss_pred EEEEecCCchHHHHhhhcCCHHHHHHHHHHHHHHHHhCC--CcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHHCCcC--
Q 018252 217 EVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLS--IPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCF-- 292 (359)
Q Consensus 217 ~V~i~~s~S~~~~~~n~~~t~~e~l~~i~~~i~~Ak~~G--~~V~~~is~~fg~~~~~r~~~e~l~~~a~~l~~~Gad-- 292 (359)
.+.+--.. +.. +..+..| ..+.|+|.... -..+++.+.+.++.+.+.+.+
T Consensus 263 ~is~d~~~-----------dl~----------~~k~~~g~~~~i~Gni~p~l-----l~gt~e~i~~~~~~~i~~~~~~g 316 (346)
T PRK00115 263 VVGLDWTV-----------DLA----------EARRRVGDKKALQGNLDPAV-----LLAPPEAIEEEVRAILDGGGGPG 316 (346)
T ss_pred EEeeCCCC-----------CHH----------HHHHHcCCCeEEEeCCChhH-----hcCCHHHHHHHHHHHHHHhCCCC
Confidence 77663221 111 1112234 44556554311 113678888888877765433
Q ss_pred -EEEE-cCCCCCCcHHHHHHHHHHHHH
Q 018252 293 -EISL-GDTIGVGTPGTVVPMLEAVMA 317 (359)
Q Consensus 293 -~I~L-~DT~G~~~P~~v~~lv~~l~~ 317 (359)
.++. |+..--..|+.+..+++++++
T Consensus 317 fIl~~Gc~i~~~tp~eNi~a~v~a~~~ 343 (346)
T PRK00115 317 HIFNLGHGILPETPPENVKALVEAVHE 343 (346)
T ss_pred eeeecCCcCCCCcCHHHHHHHHHHHHH
Confidence 5555 333333445677777777765
No 417
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=88.60 E-value=2 Score=44.38 Aligned_cols=71 Identities=10% Similarity=0.007 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHCCcCEEEEcCCCCCCcHHHHHHHHHHHHHhCCCceEEEEeCCCCCcHHHHHHHHHHcCCCEEecee
Q 018252 278 KVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQVSPMHAKPCF 354 (359)
Q Consensus 278 ~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~lv~~l~~~~p~~~L~~H~HNd~GLAlANalaAv~AGa~~ID~tl 354 (359)
+..+.++.+.++|++.|.+--+-| .-..+.+.++.+++.+|+++|.. -..+-...+..++++||+.|.+++
T Consensus 224 ~~~~r~~~L~~aG~d~I~vd~a~g--~~~~~~~~i~~i~~~~~~~~vi~----G~v~t~~~a~~l~~aGad~i~vg~ 294 (450)
T TIGR01302 224 FDKERAEALVKAGVDVIVIDSSHG--HSIYVIDSIKEIKKTYPDLDIIA----GNVATAEQAKALIDAGADGLRVGI 294 (450)
T ss_pred hHHHHHHHHHHhCCCEEEEECCCC--cHhHHHHHHHHHHHhCCCCCEEE----EeCCCHHHHHHHHHhCCCEEEECC
Confidence 455677789999999888744344 33578899999999998888777 345556788899999999998765
No 418
>PRK08444 hypothetical protein; Provisional
Probab=88.53 E-value=1.4 Score=44.17 Aligned_cols=79 Identities=11% Similarity=0.137 Sum_probs=56.4
Q ss_pred CCCHHHHHHHHHHHHHCCcCEEEEcCCCCCC---cHHHHHHHHHHHHHhCCCceEEE-------EeCCCCCcHHHHHHHH
Q 018252 273 AIPPSKVAYVAKELHDMGCFEISLGDTIGVG---TPGTVVPMLEAVMAVVPVEKLAV-------HLHDTYGQSLPNILIS 342 (359)
Q Consensus 273 r~~~e~l~~~a~~l~~~Gad~I~L~DT~G~~---~P~~v~~lv~~l~~~~p~~~L~~-------H~HNd~GLAlANalaA 342 (359)
..+++++.+.++++.+.|+++|.|. .|.- ..+.+.++++.+++.+|++.+.. |+=...|+.+.-.+..
T Consensus 79 ~ls~eeI~~~a~~a~~~G~~ei~iv--~G~~p~~~~e~y~e~ir~Ik~~~p~i~i~a~s~~Ei~~~a~~~g~~~~e~l~~ 156 (353)
T PRK08444 79 TMSHEEILEIVKNSVKRGIKEVHIV--SAHNPNYGYEWYLEIFKKIKEAYPNLHVKAMTAAEVDFLSRKFGKSYEEVLED 156 (353)
T ss_pred cCCHHHHHHHHHHHHHCCCCEEEEe--ccCCCCCCHHHHHHHHHHHHHHCCCceEeeCCHHHHHHHHHHcCCCHHHHHHH
Confidence 4689999999999999999999998 3322 23567789999999888632221 1222788888555554
Q ss_pred -HHcCCCEEece
Q 018252 343 -LQVSPMHAKPC 353 (359)
Q Consensus 343 -v~AGa~~ID~t 353 (359)
.+||++.+.++
T Consensus 157 LkeAGl~~~~g~ 168 (353)
T PRK08444 157 MLEYGVDSMPGG 168 (353)
T ss_pred HHHhCcccCCCC
Confidence 46788877653
No 419
>TIGR01064 pyruv_kin pyruvate kinase. This enzyme is a homotetramer. Some forms are active only in the presence of fructose-1,6-bisphosphate or similar phosphorylated sugars.
Probab=88.53 E-value=35 Score=35.75 Aligned_cols=157 Identities=17% Similarity=0.175 Sum_probs=97.6
Q ss_pred CCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcCCCCCHHHHHHHhhhc--CCCeEEEEeCChHhHHHHHH--cCCCEEEE
Q 018252 145 VPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDL--EGARLPVLTPNLKGFEAAIA--AGAKEVAI 220 (359)
Q Consensus 145 ~~~~~k~~ia~~L~~aGv~~IEvG~fvspk~vPq~~D~~ev~~~l~~~--~~~~l~~l~~n~~gie~a~~--aGv~~V~i 220 (359)
++..++.. ++.+.+.|++.|-+.+--++ .|-..+.+.+... .++.+.+.+.+..+++++-+ +-.+ .+
T Consensus 169 ltekD~~D-l~~~~~~~~d~I~lskV~sa------~dv~~l~~~l~~~~~~~~~Iia~IEt~~av~nl~eI~~~~d--gi 239 (473)
T TIGR01064 169 LSEKDKKD-LKFGVEQGVDMVAASFVRTA------EDVLEVREVLGEKGAKDVKIIAKIENQEGVDNIDEIAEASD--GI 239 (473)
T ss_pred CCHHHHHH-HHHHHHCCCCEEEECCCCCH------HHHHHHHHHHHhcCCCCceEEEEECCHHHHHhHHHHHhhCC--cE
Confidence 55556555 46667899999766542222 3444455555442 36778888877777665533 1235 44
Q ss_pred ecCCchHHHHhhhcCCHHHHHHHHHHHHHHHHhCCCcEEEEE----eeeecCCCCCCCCHHHHHHHHHHHHHCCcCEEEE
Q 018252 221 FASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYV----SCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISL 296 (359)
Q Consensus 221 ~~s~S~~~~~~n~~~t~~e~l~~i~~~i~~Ak~~G~~V~~~i----s~~fg~~~~~r~~~e~l~~~a~~l~~~Gad~I~L 296 (359)
++...|.-.. +| .++......+++..|+++|+.+...- || ..+|.-+|.+..++ +. +...|+|.|.|
T Consensus 240 ~iG~gDL~~~--lg--~~~l~~~~~~ii~aaraag~pvi~atqmLeSM-~~~p~PTRAe~~dv---~~-~v~~G~d~v~l 310 (473)
T TIGR01064 240 MVARGDLGVE--IP--AEEVPIAQKKMIRKCNRAGKPVITATQMLDSM-IKNPRPTRAEVSDV---AN-AILDGTDAVML 310 (473)
T ss_pred EEchHHHHhh--cC--cHHHHHHHHHHHHHHHHcCCCEEEEChhhhhh-hcCCCCCcccHHHH---HH-HHHcCCCEEEE
Confidence 5554554433 33 25667777899999999999874211 01 13455567766553 33 34469999888
Q ss_pred -cCCCCCCcHHHHHHHHHHHHHhC
Q 018252 297 -GDTIGVGTPGTVVPMLEAVMAVV 319 (359)
Q Consensus 297 -~DT~G~~~P~~v~~lv~~l~~~~ 319 (359)
.||.=--.|.+..+.+..+.++.
T Consensus 311 s~eta~G~yP~~~v~~m~~I~~~~ 334 (473)
T TIGR01064 311 SGETAKGKYPVEAVKMMAKIAKEA 334 (473)
T ss_pred cchhhcCCCHHHHHHHHHHHHHHH
Confidence 56666667999888888887654
No 420
>PRK04180 pyridoxal biosynthesis lyase PdxS; Provisional
Probab=88.50 E-value=2.3 Score=41.64 Aligned_cols=121 Identities=17% Similarity=0.083 Sum_probs=77.1
Q ss_pred ChHhHHHHHHcCCCEEEEe--cCCchHHHHhhhcCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHH
Q 018252 203 NLKGFEAAIAAGAKEVAIF--ASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVA 280 (359)
Q Consensus 203 n~~gie~a~~aGv~~V~i~--~s~S~~~~~~n~~~t~~e~l~~i~~~i~~Ak~~G~~V~~~is~~fg~~~~~r~~~e~l~ 280 (359)
|.+..+.|-++|.+.|.+. +| |+.. +.. |..+....+.++.+.+. -.++|.+ .+-..+ .
T Consensus 26 ~~~~a~iae~~g~~~v~~~~~~p-sd~~-~~g-g~~Rm~~p~~I~aIk~~---V~iPVig------------k~Righ-~ 86 (293)
T PRK04180 26 NAEQAKIAEEAGAVAVMALERVP-ADIR-AAG-GVARMADPKMIEEIMDA---VSIPVMA------------KARIGH-F 86 (293)
T ss_pred CHHHHHHHHHhChHHHHHccCCC-chHh-hcC-CeeecCCHHHHHHHHHh---CCCCeEE------------eehhhH-H
Confidence 6666777777888876654 33 2221 111 43333333333322221 2566532 122233 4
Q ss_pred HHHHHHHHCCcCEEEEcCCCCCCcHHHHHHHHHHHHHhCCCceEEEEeCCCCCcHHHHHHHHHHcCCCEEece
Q 018252 281 YVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQVSPMHAKPC 353 (359)
Q Consensus 281 ~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~lv~~l~~~~p~~~L~~H~HNd~GLAlANalaAv~AGa~~ID~t 353 (359)
.-++.+.++|+|.| |-....+| ..+++..+|+.| .+++-.-+-| +..++.++++||+.|-+|
T Consensus 87 ~Ea~~L~~~GvDiI---D~Te~lrp--ad~~~~~~K~~f-~~~fmad~~~-----l~EAlrai~~GadmI~Tt 148 (293)
T PRK04180 87 VEAQILEALGVDYI---DESEVLTP--ADEEYHIDKWDF-TVPFVCGARN-----LGEALRRIAEGAAMIRTK 148 (293)
T ss_pred HHHHHHHHcCCCEE---eccCCCCc--hHHHHHHHHHHc-CCCEEccCCC-----HHHHHHHHHCCCCeeecc
Confidence 55778999999999 88899999 568899999988 4555544433 678889999999999988
No 421
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=88.46 E-value=4.5 Score=38.64 Aligned_cols=81 Identities=12% Similarity=0.049 Sum_probs=65.0
Q ss_pred CCCCHHHHHHHHHHHHHCCcCEEEEcCCCCC---CcHHHHHHHHHHHHHhCC-CceEEEEeCC-CCCcHHHHHHHHHHcC
Q 018252 272 GAIPPSKVAYVAKELHDMGCFEISLGDTIGV---GTPGTVVPMLEAVMAVVP-VEKLAVHLHD-TYGQSLPNILISLQVS 346 (359)
Q Consensus 272 ~r~~~e~l~~~a~~l~~~Gad~I~L~DT~G~---~~P~~v~~lv~~l~~~~p-~~~L~~H~HN-d~GLAlANalaAv~AG 346 (359)
+..|.+-+.+.++.+.+.|++-|.+.-|.|= ++.++-.++++.+++..+ .+++-+|.-. +.--++.-+..|-++|
T Consensus 13 g~iD~~~~~~~i~~l~~~Gv~gi~~~GstGE~~~ls~~Er~~l~~~~~~~~~~~~~vi~gv~~~~~~~~i~~a~~a~~~G 92 (281)
T cd00408 13 GEVDLDALRRLVEFLIEAGVDGLVVLGTTGEAPTLTDEERKEVIEAVVEAVAGRVPVIAGVGANSTREAIELARHAEEAG 92 (281)
T ss_pred CCcCHHHHHHHHHHHHHcCCCEEEECCCCcccccCCHHHHHHHHHHHHHHhCCCCeEEEecCCccHHHHHHHHHHHHHcC
Confidence 5789999999999999999999999999995 457777888888877664 4677777643 4445777888899999
Q ss_pred CCEEec
Q 018252 347 PMHAKP 352 (359)
Q Consensus 347 a~~ID~ 352 (359)
|+.|=.
T Consensus 93 ad~v~v 98 (281)
T cd00408 93 ADGVLV 98 (281)
T ss_pred CCEEEE
Confidence 998754
No 422
>PRK12290 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=88.40 E-value=4.4 Score=41.96 Aligned_cols=170 Identities=15% Similarity=0.121 Sum_probs=101.5
Q ss_pred CCCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcCCCC--CHHHHH-H----H-----hhhc--CCCeEEEEeCChHhHHH
Q 018252 144 TVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLA--DARDVM-E----A-----VRDL--EGARLPVLTPNLKGFEA 209 (359)
Q Consensus 144 ~~~~~~k~~ia~~L~~aGv~~IEvG~fvspk~vPq~~--D~~ev~-~----~-----l~~~--~~~~l~~l~~n~~gie~ 209 (359)
.|+.++-+-++++....|...---|++..+..+|... +...-. . . .... ....+-.+++..+-+++
T Consensus 146 gf~~~DA~~lA~a~~~~~~~~~~~~wp~~~~~fP~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~l~LY~Vtd~~~~ve~ 225 (437)
T PRK12290 146 DFPIEDALTLARAMLTQGDNVSRETWPTQFELFPTPVLNDRRLDIQVGWSKEGATRAFPTLDKQSLGLYPVVDDVEWIER 225 (437)
T ss_pred CCChHhHHHHHHHHHhCCCCcccccCCcCHHHCCceecccccccccccccccccccCCCCCCccCceEEEEeCCHHHHHH
Confidence 4788888888998888887554444544443444431 110000 0 0 0111 12344455555556999
Q ss_pred HHHcCCCEEEEecCCchHHHHhhhcCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHHC
Q 018252 210 AIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDM 289 (359)
Q Consensus 210 a~~aGv~~V~i~~s~S~~~~~~n~~~t~~e~l~~i~~~i~~Ak~~G~~V~~~is~~fg~~~~~r~~~e~l~~~a~~l~~~ 289 (359)
+++.|++.|.+-.+ +.+.++..+.++.+.+.+++.|..+ |-+ + -.+.+.+.
T Consensus 226 aL~aGv~~VQLReK----------~ls~~el~~la~~l~~l~~~~gv~L-------iIN------D------~~dlAl~~ 276 (437)
T PRK12290 226 LLPLGINTVQLRIK----------DPQQADLEQQIIRAIALGREYNAQV-------FIN------D------YWQLAIKH 276 (437)
T ss_pred HHhCCCCEEEEeCC----------CCCHHHHHHHHHHHHHHHHHhCCEE-------EEE------C------HHHHHHHc
Confidence 99999999988543 2345677778888888899888765 211 1 24445667
Q ss_pred CcCEEEEcCCCCCCcHHHHHHHHHHHHHhC-CCceEEEEeCCCCCcHHHHHHHHHHcCCCEEeceeee
Q 018252 290 GCFEISLGDTIGVGTPGTVVPMLEAVMAVV-PVEKLAVHLHDTYGQSLPNILISLQVSPMHAKPCFTF 356 (359)
Q Consensus 290 Gad~I~L~DT~G~~~P~~v~~lv~~l~~~~-p~~~L~~H~HNd~GLAlANalaAv~AGa~~ID~tl~~ 356 (359)
|++-|-|.-. ++. ...+++.. ++..||+=+|+...+ ..|.+.|+|+|=..=.|
T Consensus 277 gAdGVHLGQe-------DL~--~~~aR~ilg~~~iIGvStHs~eEl-----~~A~~~gaDYI~lGPIF 330 (437)
T PRK12290 277 QAYGVHLGQE-------DLE--EANLAQLTDAGIRLGLSTHGYYEL-----LRIVQIQPSYIALGHIF 330 (437)
T ss_pred CCCEEEcChH-------Hcc--hhhhhhhcCCCCEEEEecCCHHHH-----HHHhhcCCCEEEECCcc
Confidence 8876655421 111 22334443 567899999987544 56778999998654433
No 423
>PLN02433 uroporphyrinogen decarboxylase
Probab=88.38 E-value=3.2 Score=41.23 Aligned_cols=70 Identities=14% Similarity=-0.046 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHCCcCEEEEcC-CCCCCcHHHHHHHH--------HHHHHhCCCceEEEEeCCCCCcHHHHHHHHHHcCCC
Q 018252 278 KVAYVAKELHDMGCFEISLGD-TIGVGTPGTVVPML--------EAVMAVVPVEKLAVHLHDTYGQSLPNILISLQVSPM 348 (359)
Q Consensus 278 ~l~~~a~~l~~~Gad~I~L~D-T~G~~~P~~v~~lv--------~~l~~~~p~~~L~~H~HNd~GLAlANalaAv~AGa~ 348 (359)
.+.++++...++|++.|.+.| +.|.+.|.++.+++ +.+++..++.++.+|.+.+- ...-.-.+.|++
T Consensus 180 ~~~~~~~~~ieaGa~~i~i~d~~~~~lsp~~f~ef~~P~~k~i~~~i~~~~~~~~~ilh~cG~~----~~~~~~~~~~~~ 255 (345)
T PLN02433 180 AVIEYVDYQIDAGAQVVQIFDSWAGHLSPVDFEEFSKPYLEKIVDEVKARHPDVPLILYANGSG----GLLERLAGTGVD 255 (345)
T ss_pred HHHHHHHHHHHcCCCEEEEecCccccCCHHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEeCCCH----HHHHHHHhcCCC
Confidence 455666667789999999998 55667788877554 34444334567888988763 222233455888
Q ss_pred EEe
Q 018252 349 HAK 351 (359)
Q Consensus 349 ~ID 351 (359)
.+.
T Consensus 256 ~i~ 258 (345)
T PLN02433 256 VIG 258 (345)
T ss_pred EEE
Confidence 765
No 424
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=88.31 E-value=21 Score=33.65 Aligned_cols=18 Identities=22% Similarity=0.302 Sum_probs=8.3
Q ss_pred HHHHHHHHHHCCcCEEEE
Q 018252 279 VAYVAKELHDMGCFEISL 296 (359)
Q Consensus 279 l~~~a~~l~~~Gad~I~L 296 (359)
+.+.++.+..+|+..|.+
T Consensus 96 ~~~~i~~a~~lG~~~v~~ 113 (284)
T PRK13210 96 MKKAIRLAQDLGIRTIQL 113 (284)
T ss_pred HHHHHHHHHHhCCCEEEE
Confidence 334444444455555544
No 425
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=88.13 E-value=2.6 Score=37.16 Aligned_cols=72 Identities=7% Similarity=0.081 Sum_probs=55.1
Q ss_pred CCHHHHHHHHHHHHHCCcCEEEEcCCCCCCcHHHHHHHHHHHHHhCCC--ceEEEEe-CCC----CCcHHHHHHHHHHcC
Q 018252 274 IPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPV--EKLAVHL-HDT----YGQSLPNILISLQVS 346 (359)
Q Consensus 274 ~~~e~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~lv~~l~~~~p~--~~L~~H~-HNd----~GLAlANalaAv~AG 346 (359)
.+.+.+.++++.+.+.|++.|.+.= ++++.+++..++ +++-++. +++ .--.+..+..|.++|
T Consensus 10 ~d~~~~~~~~~~~~~~gv~gi~~~g-----------~~i~~~~~~~~~~~~~v~~~v~~~~~~~~~~~~~~~a~~a~~~G 78 (201)
T cd00945 10 ATLEDIAKLCDEAIEYGFAAVCVNP-----------GYVRLAADALAGSDVPVIVVVGFPTGLTTTEVKVAEVEEAIDLG 78 (201)
T ss_pred CCHHHHHHHHHHHHHhCCcEEEECH-----------HHHHHHHHHhCCCCCeEEEEecCCCCCCcHHHHHHHHHHHHHcC
Confidence 3888999999999999999887762 666766666653 6666665 333 455888999999999
Q ss_pred CCEEeceeee
Q 018252 347 PMHAKPCFTF 356 (359)
Q Consensus 347 a~~ID~tl~~ 356 (359)
|+.|.....+
T Consensus 79 ad~i~v~~~~ 88 (201)
T cd00945 79 ADEIDVVINI 88 (201)
T ss_pred CCEEEEeccH
Confidence 9999876554
No 426
>PLN02826 dihydroorotate dehydrogenase
Probab=88.12 E-value=34 Score=35.18 Aligned_cols=80 Identities=11% Similarity=0.123 Sum_probs=52.3
Q ss_pred CCHHHHHHHHHHHHHCCcCEEEEcCCCC-----------------CCcHH---HHHHHHHHHHHhCC-Cce-EEEEeCCC
Q 018252 274 IPPSKVAYVAKELHDMGCFEISLGDTIG-----------------VGTPG---TVVPMLEAVMAVVP-VEK-LAVHLHDT 331 (359)
Q Consensus 274 ~~~e~l~~~a~~l~~~Gad~I~L~DT~G-----------------~~~P~---~v~~lv~~l~~~~p-~~~-L~~H~HNd 331 (359)
.+.+.+.++++.+.++|+|-|.+..|.= ..-|. ..-+++..+.+.++ .++ |++=
T Consensus 273 l~~~di~~ia~~a~~~G~dGIi~~NTt~~r~~dl~~~~~~~~~GGlSG~pl~~~sl~~v~~l~~~~~~~ipIIgvG---- 348 (409)
T PLN02826 273 LSKEDLEDIAAVALALGIDGLIISNTTISRPDSVLGHPHADEAGGLSGKPLFDLSTEVLREMYRLTRGKIPLVGCG---- 348 (409)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEEcccCcCccchhcccccccCCCcCCccccHHHHHHHHHHHHHhCCCCcEEEEC----
Confidence 4667899999999999999988887641 11111 23456666666653 233 3331
Q ss_pred CCcHH-HHHHHHHHcCCCEEeceeeecc
Q 018252 332 YGQSL-PNILISLQVSPMHAKPCFTFAY 358 (359)
Q Consensus 332 ~GLAl-ANalaAv~AGa~~ID~tl~~~~ 358 (359)
|-.. .-+++.+.|||+.|...-.|.|
T Consensus 349 -GI~sg~Da~e~i~AGAs~VQv~Ta~~~ 375 (409)
T PLN02826 349 -GVSSGEDAYKKIRAGASLVQLYTAFAY 375 (409)
T ss_pred -CCCCHHHHHHHHHhCCCeeeecHHHHh
Confidence 2222 4688999999999987766544
No 427
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=88.12 E-value=19 Score=34.97 Aligned_cols=98 Identities=18% Similarity=0.124 Sum_probs=59.4
Q ss_pred HHHHHHcCCCEEEEecCCchHHHHhhhcCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHH
Q 018252 207 FEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKEL 286 (359)
Q Consensus 207 ie~a~~aGv~~V~i~~s~S~~~~~~n~~~t~~e~l~~i~~~i~~Ak~~G~~V~~~is~~fg~~~~~r~~~e~l~~~a~~l 286 (359)
++..++.|++.+.+.-++.|.+ ..|.+|-.+-++.+++.++. .+.|.+.+ +. ..+..++.++.+
T Consensus 32 i~~l~~~Gv~gi~v~GstGE~~-----~Lt~eEr~~v~~~~~~~~~g-~~pvi~gv---------~~-~t~~ai~~a~~a 95 (296)
T TIGR03249 32 IEWLLGYGLEALFAAGGTGEFF-----SLTPAEYEQVVEIAVSTAKG-KVPVYTGV---------GG-NTSDAIEIARLA 95 (296)
T ss_pred HHHHHhcCCCEEEECCCCcCcc-----cCCHHHHHHHHHHHHHHhCC-CCcEEEec---------Cc-cHHHHHHHHHHH
Confidence 4555667888888777777754 34556655555555555432 23442222 12 356777888888
Q ss_pred HHCCcCEEEEcCC-CCCCcHHHHHHHHHHHHHhCC
Q 018252 287 HDMGCFEISLGDT-IGVGTPGTVVPMLEAVMAVVP 320 (359)
Q Consensus 287 ~~~Gad~I~L~DT-~G~~~P~~v~~lv~~l~~~~p 320 (359)
.++|+|.+.+.-. .-..+++++.+.++.+.+..+
T Consensus 96 ~~~Gadav~~~pP~y~~~s~~~i~~~f~~v~~a~~ 130 (296)
T TIGR03249 96 EKAGADGYLLLPPYLINGEQEGLYAHVEAVCESTD 130 (296)
T ss_pred HHhCCCEEEECCCCCCCCCHHHHHHHHHHHHhccC
Confidence 8888886555333 333456777777777777654
No 428
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=88.10 E-value=3.9 Score=38.99 Aligned_cols=95 Identities=17% Similarity=0.064 Sum_probs=64.7
Q ss_pred HHHHHHcCCCEEEEecCCchHHHHhhhcCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHH
Q 018252 207 FEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKEL 286 (359)
Q Consensus 207 ie~a~~aGv~~V~i~~s~S~~~~~~n~~~t~~e~l~~i~~~i~~Ak~~G~~V~~~is~~fg~~~~~r~~~e~l~~~a~~l 286 (359)
++.+.+.|.+.|-+....-+ .+. +...++|+.+++.|++|..-+..-+.. -....+++...+.+++.
T Consensus 77 l~~~k~lGf~~IEiS~G~~~--------i~~----~~~~rlI~~~~~~g~~v~~EvG~K~~~-~~~~~~~~~~i~~~~~~ 143 (237)
T TIGR03849 77 LNECDELGFEAVEISDGSME--------ISL----EERCNLIERAKDNGFMVLSEVGKKSPE-KDSELTPDDRIKLINKD 143 (237)
T ss_pred HHHHHHcCCCEEEEcCCccC--------CCH----HHHHHHHHHHHhCCCeEeccccccCCc-ccccCCHHHHHHHHHHH
Confidence 55777889999998654222 122 334578899999999885433322211 12247889999999999
Q ss_pred HHCCcCE-----------EEEcCCCCCCcHHHHHHHHHH
Q 018252 287 HDMGCFE-----------ISLGDTIGVGTPGTVVPMLEA 314 (359)
Q Consensus 287 ~~~Gad~-----------I~L~DT~G~~~P~~v~~lv~~ 314 (359)
.++||+. +.|+|..|-.....+.++++.
T Consensus 144 LeAGA~~ViiEarEsg~~~Gi~~~~g~~r~d~v~~i~~~ 182 (237)
T TIGR03849 144 LEAGADYVIIEGRESGKNIGLFDEKGNVKEDELDVLAEN 182 (237)
T ss_pred HHCCCcEEEEeehhcCCCcceeCCCCCCchHHHHHHHhh
Confidence 9999984 466777777777777776664
No 429
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=88.07 E-value=24 Score=33.43 Aligned_cols=101 Identities=14% Similarity=0.043 Sum_probs=64.7
Q ss_pred HHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHHCCcCEEEEcCCCCCCcHHHHHHHHHHHHHhCC
Q 018252 241 LVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVP 320 (359)
Q Consensus 241 l~~i~~~i~~Ak~~G~~V~~~is~~fg~~~~~r~~~e~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~lv~~l~~~~p 320 (359)
.+.+.++++.+++.+.+|.+-+..- .+.+...++++.+.++|++.|.+ |..=...|.--.+.++.+++.++
T Consensus 120 p~~l~~iv~av~~~~~PVsvKiR~~--------~~~~~~~~~a~~l~~aGad~i~V-d~~~~g~~~a~~~~I~~i~~~~~ 190 (231)
T TIGR00736 120 KELLKEFLTKMKELNKPIFVKIRGN--------CIPLDELIDALNLVDDGFDGIHV-DAMYPGKPYADMDLLKILSEEFN 190 (231)
T ss_pred HHHHHHHHHHHHcCCCcEEEEeCCC--------CCcchHHHHHHHHHHcCCCEEEE-eeCCCCCchhhHHHHHHHHHhcC
Confidence 4566777777777777776555411 23356789999999999999988 42111223234677888888875
Q ss_pred CceEEEEeCCCCCcHHHHHHHHHHcCCCEEece
Q 018252 321 VEKLAVHLHDTYGQSLPNILISLQVSPMHAKPC 353 (359)
Q Consensus 321 ~~~L~~H~HNd~GLAlANalaAv~AGa~~ID~t 353 (359)
.++|-- |.-=....-+++.+++||+-|-.+
T Consensus 191 ~ipIIg---NGgI~s~eda~e~l~~GAd~Vmvg 220 (231)
T TIGR00736 191 DKIIIG---NNSIDDIESAKEMLKAGADFVSVA 220 (231)
T ss_pred CCcEEE---ECCcCCHHHHHHHHHhCCCeEEEc
Confidence 344332 221223466778888899987543
No 430
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=88.06 E-value=1.7 Score=39.32 Aligned_cols=69 Identities=9% Similarity=0.016 Sum_probs=54.6
Q ss_pred CCHHHHHHHHHHHHHCCcCEEEEcCCCCCCcHHHHHHHHHHHHHhCCCceEEE-EeCCCCCcHHHHHHHHHHcCCCEEec
Q 018252 274 IPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAV-HLHDTYGQSLPNILISLQVSPMHAKP 352 (359)
Q Consensus 274 ~~~e~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~lv~~l~~~~p~~~L~~-H~HNd~GLAlANalaAv~AGa~~ID~ 352 (359)
.+++.+.++++.+.+.|++.|.+.-+.+. ..+.++.+++.+|++.++. ..|++. ..-.|+++|++.|.+
T Consensus 13 ~~~~~~~~~~~~l~~~G~~~vev~~~~~~-----~~~~i~~l~~~~~~~~iGag~v~~~~-----~~~~a~~~Ga~~i~~ 82 (190)
T cd00452 13 DDAEDALALAEALIEGGIRAIEITLRTPG-----ALEAIRALRKEFPEALIGAGTVLTPE-----QADAAIAAGAQFIVS 82 (190)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEeCCChh-----HHHHHHHHHHHCCCCEEEEEeCCCHH-----HHHHHHHcCCCEEEc
Confidence 47899999999999999998888765332 4558899999999777776 556544 456889999999865
No 431
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=88.03 E-value=3.4 Score=41.00 Aligned_cols=69 Identities=13% Similarity=0.069 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHCCcCEEEEcCCCCCCcHHHHHHHHHHHHHhCCCceEEEEeCCCCCcHHHHHHHHHHcCCCEEec
Q 018252 278 KVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQVSPMHAKP 352 (359)
Q Consensus 278 ~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~lv~~l~~~~p~~~L~~H~HNd~GLAlANalaAv~AGa~~ID~ 352 (359)
...+.++.+.++|++.|.+-=+.| .+..+.++++.+++..|.+++.+ +|- .....+..++++|||.|.+
T Consensus 94 ~~~~~~~~l~eagv~~I~vd~~~G--~~~~~~~~i~~ik~~~p~v~Vi~--G~v--~t~~~A~~l~~aGaD~I~v 162 (325)
T cd00381 94 DDKERAEALVEAGVDVIVIDSAHG--HSVYVIEMIKFIKKKYPNVDVIA--GNV--VTAEAARDLIDAGADGVKV 162 (325)
T ss_pred hHHHHHHHHHhcCCCEEEEECCCC--CcHHHHHHHHHHHHHCCCceEEE--CCC--CCHHHHHHHHhcCCCEEEE
Confidence 345788889999999877633333 45788899999999988666665 222 4557788899999999975
No 432
>PRK07094 biotin synthase; Provisional
Probab=87.98 E-value=15 Score=35.87 Aligned_cols=75 Identities=13% Similarity=0.101 Sum_probs=52.1
Q ss_pred CCHHHHHHHHHHHHHCCcCEEEEcCC-CCCCcHHHHHHHHHHHHHhCCCceEEEEeCCCCCc-HHHHHHHHHHcCCCEEe
Q 018252 274 IPPSKVAYVAKELHDMGCFEISLGDT-IGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQ-SLPNILISLQVSPMHAK 351 (359)
Q Consensus 274 ~~~e~l~~~a~~l~~~Gad~I~L~DT-~G~~~P~~v~~lv~~l~~~~p~~~L~~H~HNd~GL-AlANalaAv~AGa~~ID 351 (359)
.+++++++.++.+.+.|+..|.|.+. ........+.++++.+++. +++.+.++. |. --.-...-.++|++.|.
T Consensus 70 ls~eei~~~~~~~~~~g~~~i~l~gG~~~~~~~~~l~~l~~~i~~~-~~l~i~~~~----g~~~~e~l~~Lk~aG~~~v~ 144 (323)
T PRK07094 70 LSPEEILECAKKAYELGYRTIVLQSGEDPYYTDEKIADIIKEIKKE-LDVAITLSL----GERSYEEYKAWKEAGADRYL 144 (323)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEecCCCCCCCHHHHHHHHHHHHcc-CCceEEEec----CCCCHHHHHHHHHcCCCEEE
Confidence 47999999999999999999999632 2334568888999999887 444443332 32 22344455678999886
Q ss_pred ce
Q 018252 352 PC 353 (359)
Q Consensus 352 ~t 353 (359)
..
T Consensus 145 ~g 146 (323)
T PRK07094 145 LR 146 (323)
T ss_pred ec
Confidence 53
No 433
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=87.97 E-value=18 Score=32.61 Aligned_cols=109 Identities=11% Similarity=0.109 Sum_probs=62.7
Q ss_pred HhHHHHHHcCCCEEEE------ecCCchHHHHhhhcCCHHHHHHHHHHHHHHHHhC-CCcEEEEEeeeecCCCCCCCCHH
Q 018252 205 KGFEAAIAAGAKEVAI------FASASEAFSKSNINCSIEDSLVRYRAVAHAAKVL-SIPVRGYVSCVVGCPVEGAIPPS 277 (359)
Q Consensus 205 ~gie~a~~aGv~~V~i------~~s~S~~~~~~n~~~t~~e~l~~i~~~i~~Ak~~-G~~V~~~is~~fg~~~~~r~~~e 277 (359)
+.++.+.++|++.|++ +++.+. . .++. ++..++. ..++.+.++. .+++
T Consensus 15 ~~~~~~~~~g~d~i~~~~~Dg~~~~~~~--------~----~~~~----v~~i~~~~~~~v~v~lm~---------~~~~ 69 (210)
T TIGR01163 15 EEVKAVEEAGADWIHVDVMDGHFVPNLT--------F----GPPV----LEALRKYTDLPIDVHLMV---------ENPD 69 (210)
T ss_pred HHHHHHHHcCCCEEEEcCCCCCCCCCcc--------c----CHHH----HHHHHhcCCCcEEEEeee---------CCHH
Confidence 5677788899999998 333111 1 1222 2222222 3444344431 1333
Q ss_pred HHHHHHHHHHHCCcCEEEEcCCCCCCcHHHHHHHHHHHHHhCCCceEEEEeCCCCCcHHHHHHHHHHcCCCEE
Q 018252 278 KVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQVSPMHA 350 (359)
Q Consensus 278 ~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~lv~~l~~~~p~~~L~~H~HNd~GLAlANalaAv~AGa~~I 350 (359)
++++.+.++|++.|.+.+- .+....+.++.+++.-....+.+..|+. ...+.++..|+++|
T Consensus 70 ---~~~~~~~~~gadgv~vh~~----~~~~~~~~~~~~~~~g~~~~~~~~~~t~-----~e~~~~~~~~~d~i 130 (210)
T TIGR01163 70 ---RYIEDFAEAGADIITVHPE----ASEHIHRLLQLIKDLGAKAGIVLNPATP-----LEFLEYVLPDVDLV 130 (210)
T ss_pred ---HHHHHHHHcCCCEEEEccC----CchhHHHHHHHHHHcCCcEEEEECCCCC-----HHHHHHHHhhCCEE
Confidence 3567777999999888662 2455566677766654345666767654 34456666677765
No 434
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional
Probab=87.89 E-value=12 Score=36.45 Aligned_cols=98 Identities=17% Similarity=0.130 Sum_probs=49.9
Q ss_pred HHHHHHcCCCEEEEecCCchHHHHhhhcCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHH
Q 018252 207 FEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKEL 286 (359)
Q Consensus 207 ie~a~~aGv~~V~i~~s~S~~~~~~n~~~t~~e~l~~i~~~i~~Ak~~G~~V~~~is~~fg~~~~~r~~~e~l~~~a~~l 286 (359)
++..++.|++.|-+.-++.|.+ ..|.+|-.+.++.+++.+.. .++|.+.+ +. +.+..++.++.+
T Consensus 34 i~~l~~~Gv~Gi~~~GstGE~~-----~Lt~eEr~~~~~~~~~~~~~-~~pvi~gv---------~~-~t~~~i~~~~~a 97 (303)
T PRK03620 34 LEWLAPYGAAALFAAGGTGEFF-----SLTPDEYSQVVRAAVETTAG-RVPVIAGA---------GG-GTAQAIEYAQAA 97 (303)
T ss_pred HHHHHHcCCCEEEECcCCcCcc-----cCCHHHHHHHHHHHHHHhCC-CCcEEEec---------CC-CHHHHHHHHHHH
Confidence 3444556666666665555543 23455555444444444421 23332211 11 445666666666
Q ss_pred HHCCcCEEEEcCC-CCCCcHHHHHHHHHHHHHhCC
Q 018252 287 HDMGCFEISLGDT-IGVGTPGTVVPMLEAVMAVVP 320 (359)
Q Consensus 287 ~~~Gad~I~L~DT-~G~~~P~~v~~lv~~l~~~~p 320 (359)
.++|+|.+.+.=. .-..+++.+.+.++.+.+..+
T Consensus 98 ~~~Gadav~~~pP~y~~~~~~~i~~~f~~va~~~~ 132 (303)
T PRK03620 98 ERAGADGILLLPPYLTEAPQEGLAAHVEAVCKSTD 132 (303)
T ss_pred HHhCCCEEEECCCCCCCCCHHHHHHHHHHHHHhCC
Confidence 6666665444332 233445666666666666543
No 435
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=87.87 E-value=2.1 Score=44.68 Aligned_cols=69 Identities=12% Similarity=0.038 Sum_probs=55.4
Q ss_pred HHHHHHHHHHCCcCEEEEcCCCCCCcHHHHHHHHHHHHHhCCCceEEEEeCCCCCcHHHHHHHHHHcCCCEEece
Q 018252 279 VAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQVSPMHAKPC 353 (359)
Q Consensus 279 l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~lv~~l~~~~p~~~L~~H~HNd~GLAlANalaAv~AGa~~ID~t 353 (359)
..+.++.+.++|++.|.+-++-|. +..+.+.++.+++.+|+++|.+ -.++-...+..++++||+.|++.
T Consensus 229 ~~e~a~~L~~agvdvivvD~a~g~--~~~vl~~i~~i~~~~p~~~vi~----g~v~t~e~a~~l~~aGad~i~vg 297 (486)
T PRK05567 229 NEERAEALVEAGVDVLVVDTAHGH--SEGVLDRVREIKAKYPDVQIIA----GNVATAEAARALIEAGADAVKVG 297 (486)
T ss_pred hHHHHHHHHHhCCCEEEEECCCCc--chhHHHHHHHHHhhCCCCCEEE----eccCCHHHHHHHHHcCCCEEEEC
Confidence 368899999999998865444444 5788999999999998878777 44666788999999999999864
No 436
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=87.86 E-value=15 Score=38.47 Aligned_cols=132 Identities=20% Similarity=0.197 Sum_probs=80.7
Q ss_pred HHHHHHHHHHHhCCCCEEEEeccCCCCCcCCCCCHHHHHHHhh-hcCCCeEEE-EeCChHhHHHHHHcCCCEEEEecCC-
Q 018252 148 GVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVR-DLEGARLPV-LTPNLKGFEAAIAAGAKEVAIFASA- 224 (359)
Q Consensus 148 ~~k~~ia~~L~~aGv~~IEvG~fvspk~vPq~~D~~ev~~~l~-~~~~~~l~~-l~~n~~gie~a~~aGv~~V~i~~s~- 224 (359)
++-.+.++.|.+.|++.|-+=.--.. .....+..+.++ ..|++.+.+ =+-+.++.+.++++|+|-|.+-+..
T Consensus 226 ~~~~~~a~~Lv~aGvd~i~~D~a~~~-----~~~~~~~i~~ik~~~p~~~v~agnv~t~~~a~~l~~aGad~v~vgig~g 300 (479)
T PRK07807 226 GDVAAKARALLEAGVDVLVVDTAHGH-----QEKMLEALRAVRALDPGVPIVAGNVVTAEGTRDLVEAGADIVKVGVGPG 300 (479)
T ss_pred hhHHHHHHHHHHhCCCEEEEeccCCc-----cHHHHHHHHHHHHHCCCCeEEeeccCCHHHHHHHHHcCCCEEEECccCC
Confidence 45678999999999999755321000 012233344444 346666554 4456788999999999998864422
Q ss_pred chHHHHhhhcCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHHCCcCEEEEcC
Q 018252 225 SEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGD 298 (359)
Q Consensus 225 S~~~~~~n~~~t~~e~l~~i~~~i~~Ak~~G~~V~~~is~~fg~~~~~r~~~e~l~~~a~~l~~~Gad~I~L~D 298 (359)
|---.+.+.+.+. -.+..+.++.+.|++.|++|.+ +++-..+.. +++.+ .+||+.+.+.-
T Consensus 301 sictt~~~~~~~~-p~~~av~~~~~~~~~~~~~via---------~ggi~~~~~---~~~al-~~ga~~v~~g~ 360 (479)
T PRK07807 301 AMCTTRMMTGVGR-PQFSAVLECAAAARELGAHVWA---------DGGVRHPRD---VALAL-AAGASNVMIGS 360 (479)
T ss_pred cccccccccCCch-hHHHHHHHHHHHHHhcCCcEEe---------cCCCCCHHH---HHHHH-HcCCCeeeccH
Confidence 1001112234444 3578888999999998988731 445566654 44433 47998887653
No 437
>cd01299 Met_dep_hydrolase_A Metallo-dependent hydrolases, subgroup A is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.
Probab=87.82 E-value=3.5 Score=40.09 Aligned_cols=71 Identities=13% Similarity=0.031 Sum_probs=51.8
Q ss_pred CCHHHHHHHHHHHHHCCcCEEEEcCCCC-----------CCcHHHHHHHHHHHHHhCCCceEEEEeCCCCCcHHHHHHHH
Q 018252 274 IPPSKVAYVAKELHDMGCFEISLGDTIG-----------VGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILIS 342 (359)
Q Consensus 274 ~~~e~l~~~a~~l~~~Gad~I~L~DT~G-----------~~~P~~v~~lv~~l~~~~p~~~L~~H~HNd~GLAlANalaA 342 (359)
.+++++.+.++++.+.|++.|-+--+.+ ..+++.+..+++..++. +.++.+|++.+ ..+..+
T Consensus 117 ~~~~~~~~~v~~~~~~G~~~iK~~~~g~~~~~~~~~~~~~~~~e~l~~~~~~A~~~--g~~v~~H~~~~-----~~i~~~ 189 (342)
T cd01299 117 DGVEEVRAAVREQLRRGADQIKIMATGGVLSPGDPPPDTQFSEEELRAIVDEAHKA--GLYVAAHAYGA-----EAIRRA 189 (342)
T ss_pred cCHHHHHHHHHHHHHhCCCEEEEeccCCcCCCCCCCcccCcCHHHHHHHHHHHHHc--CCEEEEEeCCH-----HHHHHH
Confidence 4678888888888888998876654432 46778888888877764 46788888754 456678
Q ss_pred HHcCCCEEe
Q 018252 343 LQVSPMHAK 351 (359)
Q Consensus 343 v~AGa~~ID 351 (359)
+++|++.|+
T Consensus 190 l~~G~~~i~ 198 (342)
T cd01299 190 IRAGVDTIE 198 (342)
T ss_pred HHcCCCEEe
Confidence 888988765
No 438
>PRK13399 fructose-1,6-bisphosphate aldolase; Provisional
Probab=87.77 E-value=6.2 Score=39.71 Aligned_cols=101 Identities=9% Similarity=0.019 Sum_probs=72.7
Q ss_pred HHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHHCCcCE-EEEcCC-CCCCcHHHHHHHHHHHHHhCC
Q 018252 243 RYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFE-ISLGDT-IGVGTPGTVVPMLEAVMAVVP 320 (359)
Q Consensus 243 ~i~~~i~~Ak~~G~~V~~~is~~fg~~~~~r~~~e~l~~~a~~l~~~Gad~-I~L~DT-~G~~~P~~v~~lv~~l~~~~p 320 (359)
.++++++.|++.|+-|- +|.+ ++.+.+..+++.+.+.+... |.+... ...+-...+..++..+.+..+
T Consensus 5 ~~k~lL~~A~~~~yaV~-----AfN~-----~n~e~~~avi~AAEe~~sPvIlq~s~~~~~~~g~~~~~~~v~~~ae~~~ 74 (347)
T PRK13399 5 TLRQLLDHAAENGYGVP-----AFNV-----NNMEQILAIMEAAEATDSPVILQASRGARKYAGDAMLRHMVLAAAEMYP 74 (347)
T ss_pred cHHHHHHHHHHCCceEE-----EEEe-----CCHHHHHHHHHHHHHhCCCEEEECCcchhhhCCHHHHHHHHHHHHHhcC
Confidence 35688899999999763 3432 58889999999999988764 444332 233445667888888887776
Q ss_pred CceEEEEeCCCCCcHHHHHHHHHHcCCCE--Eeceee
Q 018252 321 VEKLAVHLHDTYGQSLPNILISLQVSPMH--AKPCFT 355 (359)
Q Consensus 321 ~~~L~~H~HNd~GLAlANalaAv~AGa~~--ID~tl~ 355 (359)
.+|+.+|. |-|.....+..|+++|.+- ||+|-+
T Consensus 75 ~VPVaLHL--DHg~~~e~i~~Ai~~GFtSVMiDgS~l 109 (347)
T PRK13399 75 DIPICLHQ--DHGNSPATCQSAIRSGFTSVMMDGSLL 109 (347)
T ss_pred CCcEEEEC--CCCCCHHHHHHHHhcCCCEEEEeCCCC
Confidence 56777654 7777888999999999874 455543
No 439
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=87.73 E-value=4.1 Score=39.38 Aligned_cols=81 Identities=14% Similarity=0.087 Sum_probs=66.9
Q ss_pred CCCCHHHHHHHHHHHHHC-CcCEEEEcCCCCCC---cHHHHHHHHHHHHHhCC-CceEEEEe-CCCCCcHHHHHHHHHHc
Q 018252 272 GAIPPSKVAYVAKELHDM-GCFEISLGDTIGVG---TPGTVVPMLEAVMAVVP-VEKLAVHL-HDTYGQSLPNILISLQV 345 (359)
Q Consensus 272 ~r~~~e~l~~~a~~l~~~-Gad~I~L~DT~G~~---~P~~v~~lv~~l~~~~p-~~~L~~H~-HNd~GLAlANalaAv~A 345 (359)
+..|.+-+.++++.+.+. |++-|.++-|.|=. +.++-.++++.+.+... .+++-++. +++.--++..+..|.++
T Consensus 16 g~iD~~~~~~~i~~l~~~~Gv~gi~~~GstGE~~~Lt~~Er~~~~~~~~~~~~~~~~viagv~~~~~~~ai~~a~~a~~~ 95 (288)
T cd00954 16 GEINEDVLRAIVDYLIEKQGVDGLYVNGSTGEGFLLSVEERKQIAEIVAEAAKGKVTLIAHVGSLNLKESQELAKHAEEL 95 (288)
T ss_pred CCCCHHHHHHHHHHHHhcCCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCCCCeEEeccCCCCHHHHHHHHHHHHHc
Confidence 578999999999999999 99999999999854 56667777777777654 36777777 77888889999999999
Q ss_pred CCCEEec
Q 018252 346 SPMHAKP 352 (359)
Q Consensus 346 Ga~~ID~ 352 (359)
||+.|=.
T Consensus 96 Gad~v~~ 102 (288)
T cd00954 96 GYDAISA 102 (288)
T ss_pred CCCEEEE
Confidence 9998753
No 440
>PF07555 NAGidase: beta-N-acetylglucosaminidase ; InterPro: IPR011496 This family consists of both eukaryotic and prokaryotic hyaluronidases. Human Q9HAR0 from SWISSPROT is expressed during meningioma []. Clostridium perfringens, P26831 from SWISSPROT, is involved in pathogenesis and is likely to act on connectivity tissue during gas gangrene []. It catalyses the random hydrolysis of 1->4-linkages between N-acetyl-beta-D-glucosamine and D-glucuronate residues in hyaluronate.; PDB: 2WB5_B 2V5C_B 2VUR_A 2V5D_A 2YDS_A 2CBI_A 2XPK_A 2CBJ_B 2J62_A 2X0Y_A ....
Probab=87.70 E-value=3.5 Score=40.74 Aligned_cols=103 Identities=17% Similarity=0.138 Sum_probs=64.8
Q ss_pred EEEecCCchHHHHhhhcCC-HHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHHCCcCEEEE
Q 018252 218 VAIFASASEAFSKSNINCS-IEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISL 296 (359)
Q Consensus 218 V~i~~s~S~~~~~~n~~~t-~~e~l~~i~~~i~~Ak~~G~~V~~~is~~fg~~~~~r~~~e~l~~~a~~l~~~Gad~I~L 296 (359)
..+++|..+.+.+.+.+.. .++-++.++++++.|++.|+.+...|+.-....+....+.+.+.+-.+.+.++||+.+.|
T Consensus 31 ~YiYAPKdDpyhr~~Wre~Yp~~el~~l~~L~~~a~~~~V~Fv~aisPg~~~~~s~~~d~~~L~~K~~ql~~lGvr~Fai 110 (306)
T PF07555_consen 31 TYIYAPKDDPYHRSKWREPYPEEELAELKELADAAKANGVDFVYAISPGLDICYSSEEDFEALKAKFDQLYDLGVRSFAI 110 (306)
T ss_dssp EEEE--TT-TTTTTTTTS---HHHHHHHHHHHHHHHHTT-EEEEEEBGTTT--TSHHHHHHHHHHHHHHHHCTT--EEEE
T ss_pred eEEECCCCChHHHhhhcccCCHHHHHHHHHHHHHHHHcCCEEEEEECcccccccCcHHHHHHHHHHHHHHHhcCCCEEEE
Confidence 5678898888877776654 356789999999999999999988887432211111234556667777888999987554
Q ss_pred -cCCCC-----------CCcHHHHHHHHHHHHHhCC
Q 018252 297 -GDTIG-----------VGTPGTVVPMLEAVMAVVP 320 (359)
Q Consensus 297 -~DT~G-----------~~~P~~v~~lv~~l~~~~p 320 (359)
.|=++ ......-.+++..|.+.+.
T Consensus 111 lfDDi~~~~~~~~~~~~~~~~~~q~~l~n~v~~~l~ 146 (306)
T PF07555_consen 111 LFDDIDGDLWHCDKDDFNSLAQAQARLLNRVNKELI 146 (306)
T ss_dssp E-TS-SSC--TTTTTT-SCHHHHHHHHHHHHHHHTT
T ss_pred eecCCCCccccccccccchHHHHHHHHHHHHHHHHh
Confidence 34455 4566777788888877664
No 441
>PRK09240 thiH thiamine biosynthesis protein ThiH; Reviewed
Probab=87.68 E-value=4 Score=41.15 Aligned_cols=76 Identities=7% Similarity=-0.060 Sum_probs=55.5
Q ss_pred CCHHHHHHHHHHHHHCCcCEEEEcC--CCCCCcHHHHHHHHHHHHHhCCCceEEEEeCCCCCcHHHHHHHHHHcCCCEEe
Q 018252 274 IPPSKVAYVAKELHDMGCFEISLGD--TIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQVSPMHAK 351 (359)
Q Consensus 274 ~~~e~l~~~a~~l~~~Gad~I~L~D--T~G~~~P~~v~~lv~~l~~~~p~~~L~~H~HNd~GLAlANalaAv~AGa~~ID 351 (359)
.+++++.+.++.+.+.|+.+|.|.- +.-...++.+.++++.+++.+|.+ .+|. ..+.......-.+||++++.
T Consensus 104 ls~eEI~~~a~~~~~~Gv~~i~lvgGe~p~~~~~e~l~~~i~~Ik~~~p~i--~i~~---g~lt~e~l~~Lk~aGv~r~~ 178 (371)
T PRK09240 104 LDEEEIEREMAAIKKLGFEHILLLTGEHEAKVGVDYIRRALPIAREYFSSV--SIEV---QPLSEEEYAELVELGLDGVT 178 (371)
T ss_pred CCHHHHHHHHHHHHhCCCCEEEEeeCCCCCCCCHHHHHHHHHHHHHhCCCc--eecc---CCCCHHHHHHHHHcCCCEEE
Confidence 5889999999999999999998863 222245678888889898888853 2222 34555566666789999887
Q ss_pred cee
Q 018252 352 PCF 354 (359)
Q Consensus 352 ~tl 354 (359)
..+
T Consensus 179 i~l 181 (371)
T PRK09240 179 VYQ 181 (371)
T ss_pred EEE
Confidence 654
No 442
>PLN02495 oxidoreductase, acting on the CH-CH group of donors
Probab=87.66 E-value=12 Score=38.19 Aligned_cols=79 Identities=5% Similarity=-0.007 Sum_probs=55.0
Q ss_pred CCHHHHHHHHHHHHHCCcCEE--EEc--CC-----CC---CCcHHHHHHHHHHHHHhCCCceEEEEeCCCCCcHHHHHHH
Q 018252 274 IPPSKVAYVAKELHDMGCFEI--SLG--DT-----IG---VGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILI 341 (359)
Q Consensus 274 ~~~e~l~~~a~~l~~~Gad~I--~L~--DT-----~G---~~~P~~v~~lv~~l~~~~p~~~L~~H~HNd~GLAlANala 341 (359)
.+++.+.++++.+.++|+|.| ++. -+ .| ...|+.++++++++++... +|+.+-.--+..-=..-+.+
T Consensus 124 ~s~~~~~~~a~~~e~~GaD~iELNiSCPn~~~~r~~g~~~gq~~e~~~~i~~~Vk~~~~-iPv~vKLsPn~t~i~~ia~a 202 (385)
T PLN02495 124 YNKDAWEEIIERVEETGVDALEINFSCPHGMPERKMGAAVGQDCDLLEEVCGWINAKAT-VPVWAKMTPNITDITQPARV 202 (385)
T ss_pred CCHHHHHHHHHHHHhcCCCEEEEECCCCCCCCcCccchhhccCHHHHHHHHHHHHHhhc-CceEEEeCCChhhHHHHHHH
Confidence 578999999999999999854 442 22 12 2469999999999988653 46666555444332344556
Q ss_pred HHHcCCCEEece
Q 018252 342 SLQVSPMHAKPC 353 (359)
Q Consensus 342 Av~AGa~~ID~t 353 (359)
|.++||+-|-.+
T Consensus 203 a~~~Gadgi~li 214 (385)
T PLN02495 203 ALKSGCEGVAAI 214 (385)
T ss_pred HHHhCCCEEEEe
Confidence 888999887654
No 443
>TIGR00693 thiE thiamine-phosphate pyrophosphorylase. This model includes ThiE from Bacillus subtilis but excludes its paralog, the regulatory protein TenI, and neighbors of TenI.
Probab=87.60 E-value=6.3 Score=35.38 Aligned_cols=106 Identities=13% Similarity=0.111 Sum_probs=68.6
Q ss_pred HhHHHHHHcCCCEEEEecCCchHHHHhhhcCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHH
Q 018252 205 KGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAK 284 (359)
Q Consensus 205 ~gie~a~~aGv~~V~i~~s~S~~~~~~n~~~t~~e~l~~i~~~i~~Ak~~G~~V~~~is~~fg~~~~~r~~~e~l~~~a~ 284 (359)
+.++.+++.|++-|.+..+ +.+..+..+.+..+...+++.|..+.. . + -.+
T Consensus 17 ~~~~~~~~~g~~~v~lR~~----------~~~~~~~~~~~~~l~~~~~~~~~~l~i-------~------~------~~~ 67 (196)
T TIGR00693 17 NRVEAALKGGVTLVQLRDK----------GSNTRERLALAEKLQELCRRYGVPFIV-------N------D------RVD 67 (196)
T ss_pred HHHHHHHhcCCCEEEEecC----------CCCHHHHHHHHHHHHHHHHHhCCeEEE-------E------C------HHH
Confidence 4578899999998877543 223445566677777888888876521 1 1 235
Q ss_pred HHHHCCcCEEEEcCCCCCCcHHHHHHHHHHHHHhC-CCceEEEEeCCCCCcHHHHHHHHHHcCCCEEece
Q 018252 285 ELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVV-PVEKLAVHLHDTYGQSLPNILISLQVSPMHAKPC 353 (359)
Q Consensus 285 ~l~~~Gad~I~L~DT~G~~~P~~v~~lv~~l~~~~-p~~~L~~H~HNd~GLAlANalaAv~AGa~~ID~t 353 (359)
.+.+.|++.|-|.+. .+.+..+ +... +...|++=+|+. ..+..|.+.|+++|=.+
T Consensus 68 la~~~g~~GvHl~~~--~~~~~~~-------r~~~~~~~~ig~s~h~~-----~e~~~a~~~g~dyi~~~ 123 (196)
T TIGR00693 68 LALALGADGVHLGQD--DLPASEA-------RALLGPDKIIGVSTHNL-----EELAEAEAEGADYIGFG 123 (196)
T ss_pred HHHHcCCCEEecCcc--cCCHHHH-------HHhcCCCCEEEEeCCCH-----HHHHHHhHcCCCEEEEC
Confidence 566789999988743 2333333 2222 345788888876 44567889999998543
No 444
>COG0469 PykF Pyruvate kinase [Carbohydrate transport and metabolism]
Probab=87.41 E-value=16 Score=38.42 Aligned_cols=158 Identities=16% Similarity=0.221 Sum_probs=96.9
Q ss_pred CCCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcCCCCCHHHHHHHhhhc--CCCeEEEEeCChHhHH---HHHHcCCCEE
Q 018252 144 TVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDL--EGARLPVLTPNLKGFE---AAIAAGAKEV 218 (359)
Q Consensus 144 ~~~~~~k~~ia~~L~~aGv~~IEvG~fvspk~vPq~~D~~ev~~~l~~~--~~~~l~~l~~n~~gie---~a~~aGv~~V 218 (359)
.++..+|..|.-.+.. |+|.|.++|.-++ .|.+++++.+.+. .++.+.+=+.+..+++ ..+++- |.|
T Consensus 172 alteKD~~dl~f~~~~-gvD~vA~SFVr~~------~Dv~~~R~~l~~~~~~~~~iiaKIE~~eav~NldeIi~~S-DGI 243 (477)
T COG0469 172 ALTEKDKEDLKFGLEQ-GVDFVALSFVRNA------EDVEEVREILAETGGRDVKIIAKIENQEAVDNLDEIIEAS-DGI 243 (477)
T ss_pred CCCccCHHHHHHHHhc-CCCEEEEecCCCH------HHHHHHHHHHHHhCCCCceEEEeecCHHHHhHHHHHHHhc-Cce
Confidence 4566677666666655 9999999985443 4777888777654 3466666666665544 444432 333
Q ss_pred EEecCCchHHHHhhhcCCHHHHHHHHHHHHHHHHhCCCcEEEEEeee---ecCCCCCCCCHHHHHHHHHHHHHCCcCEEE
Q 018252 219 AIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCV---VGCPVEGAIPPSKVAYVAKELHDMGCFEIS 295 (359)
Q Consensus 219 ~i~~s~S~~~~~~n~~~t~~e~l~~i~~~i~~Ak~~G~~V~~~is~~---fg~~~~~r~~~e~l~~~a~~l~~~Gad~I~ 295 (359)
.+.-. + ..+-...++..---+.+++.|+..|..|...=-+- -.+|.- +..++.+++.++.+ |+|.+.
T Consensus 244 MVARG--D----LGVEip~e~Vp~~QK~iI~~~~~~gkpVItATQMLeSMi~np~P---TRAEvsDVanAvlD-GtDAvM 313 (477)
T COG0469 244 MVARG--D----LGVEIPLEEVPIIQKRIIRKARRAGKPVITATQMLESMIENPRP---TRAEVSDVANAVLD-GTDAVM 313 (477)
T ss_pred EEEec--c----cccccCHHHhhHHHHHHHHHHHHcCCceEEeeccHHHHhhCCCC---CchhhhHHHHHHHh-CCceee
Confidence 33210 0 01112233444444688999999999875322111 113333 44456678887777 999888
Q ss_pred E-cCCCCCCcHHHHHHHHHHHHHhC
Q 018252 296 L-GDTIGVGTPGTVVPMLEAVMAVV 319 (359)
Q Consensus 296 L-~DT~G~~~P~~v~~lv~~l~~~~ 319 (359)
| +-|+=...|-+..+....+....
T Consensus 314 LS~ETA~G~yPveaV~~M~~I~~~a 338 (477)
T COG0469 314 LSGETAAGKYPVEAVATMARIAKEA 338 (477)
T ss_pred echhhhcCCCHHHHHHHHHHHHHHH
Confidence 8 46777788988888777776653
No 445
>cd00947 TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) aldolase and related Type B Class II aldolases. TBP aldolase is a tetrameric class II aldolase that catalyzes the reversible condensation of dihydroxyacetone phosphate with glyceraldehyde 3-phsophate to produce tagatose 1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=87.39 E-value=7.4 Score=37.91 Aligned_cols=93 Identities=13% Similarity=0.120 Sum_probs=66.8
Q ss_pred HHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHHCCcC-EEEEcC-CCCCCcHHHHHHHHHHHHHhCCCc
Q 018252 245 RAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCF-EISLGD-TIGVGTPGTVVPMLEAVMAVVPVE 322 (359)
Q Consensus 245 ~~~i~~Ak~~G~~V~~~is~~fg~~~~~r~~~e~l~~~a~~l~~~Gad-~I~L~D-T~G~~~P~~v~~lv~~l~~~~p~~ 322 (359)
+++++.|++.|+-|- +|.+ ++.+.+..+++.+.+.+.. .|.+.. +...+....+..++..+.+..+ +
T Consensus 2 k~lL~~A~~~~yaV~-----AfN~-----~n~e~~~avi~AAe~~~sPvIi~~~~~~~~~~~~~~~~~~~~~~a~~~~-V 70 (276)
T cd00947 2 KELLKKAREGGYAVG-----AFNI-----NNLETLKAILEAAEETRSPVILQISEGAIKYAGLELLVAMVKAAAERAS-V 70 (276)
T ss_pred HHHHHHHHHCCceEE-----EEee-----CCHHHHHHHHHHHHHhCCCEEEEcCcchhhhCCHHHHHHHHHHHHHHCC-C
Confidence 467888999999763 3432 4778888999999988876 455443 2333445678888887777764 5
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHcCCCEE
Q 018252 323 KLAVHLHDTYGQSLPNILISLQVSPMHA 350 (359)
Q Consensus 323 ~L~~H~HNd~GLAlANalaAv~AGa~~I 350 (359)
|+.+|. |-|.-...+..|+++|.+-|
T Consensus 71 PV~lHL--DH~~~~~~i~~ai~~GftSV 96 (276)
T cd00947 71 PVALHL--DHGSSFELIKRAIRAGFSSV 96 (276)
T ss_pred CEEEEC--CCCCCHHHHHHHHHhCCCEE
Confidence 777765 66777899999999998753
No 446
>PRK07709 fructose-bisphosphate aldolase; Provisional
Probab=87.32 E-value=9.3 Score=37.40 Aligned_cols=95 Identities=12% Similarity=0.035 Sum_probs=68.2
Q ss_pred HHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHHCCcC-EEEEcCC-CCC-CcHHHHHHHHHHHHHhC
Q 018252 243 RYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCF-EISLGDT-IGV-GTPGTVVPMLEAVMAVV 319 (359)
Q Consensus 243 ~i~~~i~~Ak~~G~~V~~~is~~fg~~~~~r~~~e~l~~~a~~l~~~Gad-~I~L~DT-~G~-~~P~~v~~lv~~l~~~~ 319 (359)
.++++++.|++.++-|- +|. -++.+.+..+++.+.+.+.. .|.+... ... +....+..++..+.++.
T Consensus 5 ~~~~lL~~A~~~~yAV~-----AfN-----~~n~e~~~avi~AAe~~~sPvIiq~~~~~~~~~~~~~~~~~~~~~~a~~~ 74 (285)
T PRK07709 5 SMKEMLNKALEGKYAVG-----QFN-----MNNLEWTQAILAAAEEEKSPVILGVSEGAARHMTGFKTVVAMVKALIEEM 74 (285)
T ss_pred cHHHHHHHHHHCCceEE-----EEE-----ECCHHHHHHHHHHHHHHCCCEEEEcCcchhhhcCCHHHHHHHHHHHHHHc
Confidence 35678899999999763 343 25888999999999988866 4555442 233 23456777787777766
Q ss_pred C-CceEEEEeCCCCCcHHHHHHHHHHcCCCE
Q 018252 320 P-VEKLAVHLHDTYGQSLPNILISLQVSPMH 349 (359)
Q Consensus 320 p-~~~L~~H~HNd~GLAlANalaAv~AGa~~ 349 (359)
. .+|+.+| =|-|.-+..+..|+++|.+-
T Consensus 75 ~~~VPV~lH--LDHg~~~e~i~~ai~~GftS 103 (285)
T PRK07709 75 NITVPVAIH--LDHGSSFEKCKEAIDAGFTS 103 (285)
T ss_pred CCCCcEEEE--CCCCCCHHHHHHHHHcCCCE
Confidence 4 2577765 47788899999999999864
No 447
>PRK06252 methylcobalamin:coenzyme M methyltransferase; Validated
Probab=87.30 E-value=3.8 Score=40.24 Aligned_cols=71 Identities=11% Similarity=-0.006 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHCCcCEEEEcCCCC---CCcHHHHHHHHH----HHHHhCCCceEEEEeCCCCCcHHHHHHHHHHcCCCEE
Q 018252 278 KVAYVAKELHDMGCFEISLGDTIG---VGTPGTVVPMLE----AVMAVVPVEKLAVHLHDTYGQSLPNILISLQVSPMHA 350 (359)
Q Consensus 278 ~l~~~a~~l~~~Gad~I~L~DT~G---~~~P~~v~~lv~----~l~~~~p~~~L~~H~HNd~GLAlANalaAv~AGa~~I 350 (359)
.+.++++.+.++|++.|.+.|+.+ ...|..+.+++. .+.+.+......+|++-+... ..-.-.+.|++.+
T Consensus 181 ~~~~~~~~~~~aGad~I~i~d~~a~~~~lsp~~f~ef~~p~~~~i~~~i~~~~~ilH~cG~~~~---~l~~~~~~g~d~~ 257 (339)
T PRK06252 181 FCIEYAKAQLEAGADVICIADPSASPELLGPKMFEEFVLPYLNKIIDEVKGLPTILHICGDLTS---ILEEMADCGFDGI 257 (339)
T ss_pred HHHHHHHHHHHcCCCEEEeCCCCccccccCHHHHHHHHHHHHHHHHHHhccCCcEEEECCCchH---HHHHHHhcCCCee
Confidence 345566677789999999999875 678999887763 333333321466787754322 1222345688876
Q ss_pred e
Q 018252 351 K 351 (359)
Q Consensus 351 D 351 (359)
.
T Consensus 258 ~ 258 (339)
T PRK06252 258 S 258 (339)
T ss_pred c
Confidence 4
No 448
>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated
Probab=87.20 E-value=11 Score=38.43 Aligned_cols=76 Identities=14% Similarity=0.042 Sum_probs=55.2
Q ss_pred CHHHHHHHHHHHHHCCcCEEEE--c--CCC-----CC---CcHHHHHHHHHHHHHhCCCceEEEEeCCCCCcHHHHHHHH
Q 018252 275 PPSKVAYVAKELHDMGCFEISL--G--DTI-----GV---GTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILIS 342 (359)
Q Consensus 275 ~~e~l~~~a~~l~~~Gad~I~L--~--DT~-----G~---~~P~~v~~lv~~l~~~~p~~~L~~H~HNd~GLAlANalaA 342 (359)
+++.+.++++.+.++|+|.|.| . -++ |. ..|+.+.++++++++... +||.+-.--+..--..-+.++
T Consensus 111 ~~~~~~~~a~~~~~~g~d~ielN~scP~~~~~~~~g~~~~~~~~~~~~i~~~v~~~~~-~Pv~vKl~p~~~~~~~~a~~~ 189 (420)
T PRK08318 111 NEEEWKEIAPLVEETGADGIELNFGCPHGMSERGMGSAVGQVPELVEMYTRWVKRGSR-LPVIVKLTPNITDIREPARAA 189 (420)
T ss_pred CHHHHHHHHHHHHhcCCCEEEEeCCCCCCccccCCcccccCCHHHHHHHHHHHHhccC-CcEEEEcCCCcccHHHHHHHH
Confidence 5788999999999999986655 2 212 22 579999999999998764 566665554444444555678
Q ss_pred HHcCCCEEe
Q 018252 343 LQVSPMHAK 351 (359)
Q Consensus 343 v~AGa~~ID 351 (359)
.++||+.|-
T Consensus 190 ~~~Gadgi~ 198 (420)
T PRK08318 190 KRGGADAVS 198 (420)
T ss_pred HHCCCCEEE
Confidence 899998775
No 449
>PRK06247 pyruvate kinase; Provisional
Probab=87.19 E-value=42 Score=35.25 Aligned_cols=155 Identities=14% Similarity=0.171 Sum_probs=94.3
Q ss_pred CCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcCCCCCHHHHHHHhhhcCCCeEEEEeCChHhHHH---HHHcCCCEEEEe
Q 018252 145 VPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPVLTPNLKGFEA---AIAAGAKEVAIF 221 (359)
Q Consensus 145 ~~~~~k~~ia~~L~~aGv~~IEvG~fvspk~vPq~~D~~ev~~~l~~~~~~~l~~l~~n~~gie~---a~~aGv~~V~i~ 221 (359)
++..++.. ++.-.+.|++.|=+.| +.. ..|-.++++.+.. .+.+.+-+.+.+++++ .++. +|.|.+-
T Consensus 171 ltekD~~d-i~f~~~~~vD~ia~SF-Vr~-----a~Di~~~r~~l~~--~~~iiaKIEt~eav~nldeI~~~-~DgImVa 240 (476)
T PRK06247 171 LTEKDRAD-LEFALELGVDWVALSF-VQR-----PEDVEEVRKIIGG--RVPVMAKIEKPQAIDRLEAIVEA-SDAIMVA 240 (476)
T ss_pred CCHHHHHH-HHHHHHcCCCEEEECC-CCC-----HHHHHHHHHHhhh--cCeEEEEECCHHHHHhHHHHHHH-cCEEEEc
Confidence 55555555 4677889999997765 431 1344444444432 4556666666665554 3333 5655542
Q ss_pred cCCchHHHHhhhcCCHHHHHHHHHHHHHHHHhCCCcEEEE--Eeee-ecCCCCCCCCHHHHHHHHHHHHHCCcCEEEEc-
Q 018252 222 ASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGY--VSCV-VGCPVEGAIPPSKVAYVAKELHDMGCFEISLG- 297 (359)
Q Consensus 222 ~s~S~~~~~~n~~~t~~e~l~~i~~~i~~Ak~~G~~V~~~--is~~-fg~~~~~r~~~e~l~~~a~~l~~~Gad~I~L~- 297 (359)
-.|+- .-...++.....+++++.|+++|..+... +... ..+| +=+..++.+++.++.+ |+|.|.|.
T Consensus 241 --RGDLg----ve~g~~~v~~~qk~ii~~~~~~gkpvI~ATQmLeSM~~np---~PTRAEvtDVaNAV~d-G~DavMLS~ 310 (476)
T PRK06247 241 --RGDLG----VEVPLEQVPLIQKRIIRAARRAGKPVVVATQMLESMIENP---VPTRAEVSDVATAVLD-GADAVMLSA 310 (476)
T ss_pred --cchhc----cccCHHHHHHHHHHHHHHHHHhCCCEEEECchHHHhhcCC---CCCcchhHHHHHHHHh-CCcEEEEcc
Confidence 22221 11234666677789999999999987321 1000 1122 2344567778887776 99999996
Q ss_pred CCCCCCcHHHHHHHHHHHHHhC
Q 018252 298 DTIGVGTPGTVVPMLEAVMAVV 319 (359)
Q Consensus 298 DT~G~~~P~~v~~lv~~l~~~~ 319 (359)
-|+=-..|.+..+.+..+....
T Consensus 311 ETA~G~yPveaV~~m~~I~~~a 332 (476)
T PRK06247 311 ETASGKYPVEAVRTMARIIRQV 332 (476)
T ss_pred hhcCCCCHHHHHHHHHHHHHHH
Confidence 5666678988888888777643
No 450
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=87.11 E-value=13 Score=35.28 Aligned_cols=112 Identities=12% Similarity=0.019 Sum_probs=55.3
Q ss_pred HHHHHcCCCEEEEecCCchHHHHhhhcCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHH
Q 018252 208 EAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELH 287 (359)
Q Consensus 208 e~a~~aGv~~V~i~~s~S~~~~~~n~~~t~~e~l~~i~~~i~~Ak~~G~~V~~~is~~fg~~~~~r~~~e~l~~~a~~l~ 287 (359)
+.|.+.|++.|.+... +...........+...+.+++++++|+++|+.+.... ...+ ...+++...++++.
T Consensus 101 ~~a~~lG~~~v~~~~~--~~~~~~~~~~~~~~~~~~l~~l~~~A~~~Gv~l~lE~---~~~~--~~~t~~~~~~li~~-- 171 (279)
T TIGR00542 101 QLARDLGIRTIQLAGY--DVYYEEHDEETRRRFREGLKEAVELAARAQVTLAVEI---MDTP--FMSSISKWLKWDHY-- 171 (279)
T ss_pred HHHHHhCCCEEEecCc--ccccCcCCHHHHHHHHHHHHHHHHHHHHcCCEEEEee---CCCc--hhcCHHHHHHHHHH--
Confidence 4455579998876421 1100000011235567788899999999999764321 1111 12355555555443
Q ss_pred HCCcCEEEE-cCCCCCCcHHHHHHHHHHHHHhCCCceEEEEeCCCC
Q 018252 288 DMGCFEISL-GDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTY 332 (359)
Q Consensus 288 ~~Gad~I~L-~DT~G~~~P~~v~~lv~~l~~~~p~~~L~~H~HNd~ 332 (359)
.+-+.|.+ .|+.-...-. .+....++. ..+-...+|.+|..
T Consensus 172 -v~~~~v~~~~D~~h~~~~~--~~~~~~i~~-~~~~i~~vHikD~~ 213 (279)
T TIGR00542 172 -LNSPWFTLYPDIGNLSAWD--NDVQMELQL-GIDKIVAIHLKDTK 213 (279)
T ss_pred -cCCCceEEEeCcChhhhcc--CCHHHHHHH-hhhhEEEEEeCCCC
Confidence 34444433 4553221100 012222332 23347889999865
No 451
>PRK08649 inosine 5-monophosphate dehydrogenase; Validated
Probab=87.09 E-value=6.6 Score=39.77 Aligned_cols=137 Identities=18% Similarity=0.171 Sum_probs=74.0
Q ss_pred CHHHHHHHHHHHHhCCCCEEEEecc-CCCCCcCCCCCHHHHHHHhhhcCCCeEEE-EeCChHhHHHHHHcCCCEEEEecC
Q 018252 146 PTGVKVELIRRLVSSGLPVVEATSF-VSPKWVPQLADARDVMEAVRDLEGARLPV-LTPNLKGFEAAIAAGAKEVAIFAS 223 (359)
Q Consensus 146 ~~~~k~~ia~~L~~aGv~~IEvG~f-vspk~vPq~~D~~ev~~~l~~~~~~~l~~-l~~n~~gie~a~~aGv~~V~i~~s 223 (359)
+...-.++++.|.++|++.|.+-.- ........-.++..+.+.+++. ++.+.+ -+.+.++.+.++++|+|-|.+-..
T Consensus 139 ~~~~~~e~a~~l~eaGvd~I~vhgrt~~~~h~~~~~~~~~i~~~ik~~-~ipVIaG~V~t~e~A~~l~~aGAD~V~VG~G 217 (368)
T PRK08649 139 SPQRAQELAPTVVEAGVDLFVIQGTVVSAEHVSKEGEPLNLKEFIYEL-DVPVIVGGCVTYTTALHLMRTGAAGVLVGIG 217 (368)
T ss_pred CCcCHHHHHHHHHHCCCCEEEEeccchhhhccCCcCCHHHHHHHHHHC-CCCEEEeCCCCHHHHHHHHHcCCCEEEECCC
Confidence 3445789999999999999998431 1100000012556666666653 455543 445678899999999999866422
Q ss_pred CchHHH-HhhhcCCHHHHHHHHHHHHHHHHhC-------CCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHHCCcCEEE
Q 018252 224 ASEAFS-KSNINCSIEDSLVRYRAVAHAAKVL-------SIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEIS 295 (359)
Q Consensus 224 ~S~~~~-~~n~~~t~~e~l~~i~~~i~~Ak~~-------G~~V~~~is~~fg~~~~~r~~~e~l~~~a~~l~~~Gad~I~ 295 (359)
.-..+. ....+.... .+..+.++.+.++++ +++|. + +++-.+... +++.+ .+||+.+.
T Consensus 218 ~Gs~~~t~~~~g~g~p-~~~ai~~~~~a~~~~l~~~~~~~vpVI-----A----dGGI~~~~d---iakAl-alGAd~Vm 283 (368)
T PRK08649 218 PGAACTSRGVLGIGVP-MATAIADVAAARRDYLDETGGRYVHVI-----A----DGGIGTSGD---IAKAI-ACGADAVM 283 (368)
T ss_pred CCcCCCCcccCCCCcC-HHHHHHHHHHHHHHhhhhhcCCCCeEE-----E----eCCCCCHHH---HHHHH-HcCCCeec
Confidence 111121 112222222 234444554444332 34442 1 344455544 55544 47998776
Q ss_pred Ec
Q 018252 296 LG 297 (359)
Q Consensus 296 L~ 297 (359)
+.
T Consensus 284 ~G 285 (368)
T PRK08649 284 LG 285 (368)
T ss_pred cc
Confidence 54
No 452
>PRK12857 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=87.07 E-value=9.2 Score=37.38 Aligned_cols=95 Identities=12% Similarity=0.091 Sum_probs=67.5
Q ss_pred HHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHHCCcC-EEEEcCC-CCCCcHHHHHHHHHHHHHhCC
Q 018252 243 RYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCF-EISLGDT-IGVGTPGTVVPMLEAVMAVVP 320 (359)
Q Consensus 243 ~i~~~i~~Ak~~G~~V~~~is~~fg~~~~~r~~~e~l~~~a~~l~~~Gad-~I~L~DT-~G~~~P~~v~~lv~~l~~~~p 320 (359)
.++++++.|++.++-|- +|.+ ++.+.+..+++.+.+.+.. .|.+... .....-..+..++..+.++.+
T Consensus 5 ~~k~iL~~A~~~~yaV~-----AfNv-----~n~e~~~avi~AAee~~sPvIlq~~~~~~~~~g~~~~~~~~~~~A~~~~ 74 (284)
T PRK12857 5 TVAELLKKAEKGGYAVG-----AFNC-----NNMEIVQAIVAAAEAEKSPVIIQASQGAIKYAGIEYISAMVRTAAEKAS 74 (284)
T ss_pred cHHHHHHHHHHcCCeEE-----EEEe-----CCHHHHHHHHHHHHHhCCCEEEEechhHhhhCCHHHHHHHHHHHHHHCC
Confidence 35688889999998762 3432 4778899999999998865 4555543 222333456677777777765
Q ss_pred CceEEEEeCCCCCcHHHHHHHHHHcCCCEE
Q 018252 321 VEKLAVHLHDTYGQSLPNILISLQVSPMHA 350 (359)
Q Consensus 321 ~~~L~~H~HNd~GLAlANalaAv~AGa~~I 350 (359)
+|+.+|. |-|.....+..|+++|.+-|
T Consensus 75 -VPValHL--DH~~~~e~i~~ai~~GftSV 101 (284)
T PRK12857 75 -VPVALHL--DHGTDFEQVMKCIRNGFTSV 101 (284)
T ss_pred -CCEEEEC--CCCCCHHHHHHHHHcCCCeE
Confidence 5777654 77778899999999998743
No 453
>COG0191 Fba Fructose/tagatose bisphosphate aldolase [Carbohydrate transport and metabolism]
Probab=87.01 E-value=7 Score=38.26 Aligned_cols=96 Identities=10% Similarity=0.068 Sum_probs=70.6
Q ss_pred HHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHHCCcCE-EEEcCC-CCCCc-HHHHHHHHHHHHHhCCC
Q 018252 245 RAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFE-ISLGDT-IGVGT-PGTVVPMLEAVMAVVPV 321 (359)
Q Consensus 245 ~~~i~~Ak~~G~~V~~~is~~fg~~~~~r~~~e~l~~~a~~l~~~Gad~-I~L~DT-~G~~~-P~~v~~lv~~l~~~~p~ 321 (359)
+.+++.|++.|+-|- +|.+ ...+.+..+.+++.+.+... |..... .-++. -..++.++..+.+.++
T Consensus 7 ~~ll~~Ake~~yAvp-----AfN~-----~nlE~~~AileaA~e~~sPvIiq~S~g~~~y~gg~~~~~~~v~~~a~~~~- 75 (286)
T COG0191 7 KELLDKAKENGYAVP-----AFNI-----NNLETLQAILEAAEEEKSPVIIQFSEGAAKYAGGADSLAHMVKALAEKYG- 75 (286)
T ss_pred HHHHHHHHHcCCcee-----eeee-----cCHHHHHHHHHHHHHhCCCEEEEecccHHHHhchHHHHHHHHHHHHHHCC-
Confidence 678899999999762 3543 47789999999999988764 333322 22223 4667888888888888
Q ss_pred ceEEEEeCCCCCcHHHHHHHHHHcCCCE--Eece
Q 018252 322 EKLAVHLHDTYGQSLPNILISLQVSPMH--AKPC 353 (359)
Q Consensus 322 ~~L~~H~HNd~GLAlANalaAv~AGa~~--ID~t 353 (359)
+|+.+| -|-|....-+..|+++|.+- +|+|
T Consensus 76 vPV~lH--lDHg~~~~~~~~ai~~GFsSvMiDgS 107 (286)
T COG0191 76 VPVALH--LDHGASFEDCKQAIRAGFSSVMIDGS 107 (286)
T ss_pred CCEEEE--CCCCCCHHHHHHHHhcCCceEEecCC
Confidence 788776 48888999999999999874 4554
No 454
>TIGR00433 bioB biotin synthetase. Catalyzes the last step of the biotin biosynthesis pathway.
Probab=87.01 E-value=2.9 Score=40.05 Aligned_cols=32 Identities=19% Similarity=0.213 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHCCcCEEEEcCCCCCCcHHHHHH
Q 018252 276 PSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVP 310 (359)
Q Consensus 276 ~e~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~ 310 (359)
.+++.++.+...+.|.. +.+ +.|..+++.+..
T Consensus 97 ~~~~~~i~~~~~~~~i~-~~~--~~g~~~~e~l~~ 128 (296)
T TIGR00433 97 MEYVEAMVQIVEEMGLK-TCA--TLGLLDPEQAKR 128 (296)
T ss_pred HHHHHHHHHHHHhCCCe-EEe--cCCCCCHHHHHH
Confidence 34555566655566653 332 457777554443
No 455
>PRK14041 oxaloacetate decarboxylase; Provisional
Probab=86.83 E-value=3.4 Score=43.15 Aligned_cols=84 Identities=7% Similarity=-0.007 Sum_probs=51.7
Q ss_pred CCCCHHHHHHHHHHHHHCCcCEEEEc-----CCCCCCcHHHHHHHHHHHHHhCCCceEEE--EeCCCCCcH--HHH----
Q 018252 272 GAIPPSKVAYVAKELHDMGCFEISLG-----DTIGVGTPGTVVPMLEAVMAVVPVEKLAV--HLHDTYGQS--LPN---- 338 (359)
Q Consensus 272 ~r~~~e~l~~~a~~l~~~Gad~I~L~-----DT~G~~~P~~v~~lv~~l~~~~p~~~L~~--H~HNd~GLA--lAN---- 338 (359)
.+.+.+..+++++.+.++|++.|-+. |+......++-.+.++.+++..|++++.. +++|-.|.- -.+
T Consensus 20 ~~~~t~dkl~Ia~~Ld~~Gv~~IE~~ggatfd~~~~Fl~e~p~e~l~~l~~~~~~~~l~~l~r~~N~~G~~~~~dDvv~~ 99 (467)
T PRK14041 20 TRMRTEDMLPALEAFDRMGFYSMEVWGGATFDVCVRFLNENPWERLKEIRKRLKNTKIQMLLRGQNLVGYRHYADDVVEL 99 (467)
T ss_pred ccCCHHHHHHHHHHHHHcCCCEEEecCCccchhhhcccCCCHHHHHHHHHHhCCCCEEEEEeccccccCcccccchhhHH
Confidence 35677778888888888888877772 22122222333556666666667666666 556666651 112
Q ss_pred -HHHHHHcCCCEEeceee
Q 018252 339 -ILISLQVSPMHAKPCFT 355 (359)
Q Consensus 339 -alaAv~AGa~~ID~tl~ 355 (359)
.-.|+++|+++|.....
T Consensus 100 fv~~A~~~Gvd~irif~~ 117 (467)
T PRK14041 100 FVKKVAEYGLDIIRIFDA 117 (467)
T ss_pred HHHHHHHCCcCEEEEEEe
Confidence 56777888887766543
No 456
>cd00740 MeTr MeTr subgroup of pterin binding enzymes. This family includes cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=86.83 E-value=30 Score=33.11 Aligned_cols=183 Identities=14% Similarity=0.052 Sum_probs=93.5
Q ss_pred CCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcCCCCCHHHHHHH---hhhcCCCeEEEEeCChHhHHHHHHc--CCCEEE
Q 018252 145 VPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEA---VRDLEGARLPVLTPNLKGFEAAIAA--GAKEVA 219 (359)
Q Consensus 145 ~~~~~k~~ia~~L~~aGv~~IEvG~fvspk~vPq~~D~~ev~~~---l~~~~~~~l~~l~~n~~gie~a~~a--Gv~~V~ 219 (359)
-+.+.-++.++.+.+.|.++|++|.- |.. ....+++.+. ++...++.++.=+.+.+-++.|++. |.+.|+
T Consensus 23 ~~~d~~~~~A~~~~~~GAdiIDIG~~--~~~---~~~~ee~~r~v~~i~~~~~~piSIDT~~~~v~e~aL~~~~G~~iIN 97 (252)
T cd00740 23 EDYDEALDVARQQVEGGAQILDLNVD--YGG---LDGVSAMKWLLNLLATEPTVPLMLDSTNWEVIEAGLKCCQGKCVVN 97 (252)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEECCC--CCC---CCHHHHHHHHHHHHHHhcCCcEEeeCCcHHHHHHHHhhCCCCcEEE
Confidence 56788889999999999999999973 211 1223333333 3333355444444566778889887 866544
Q ss_pred EecCCchHHHHhhhcCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCH----HHHHHHHHHHH-HCCc--C
Q 018252 220 IFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPP----SKVAYVAKELH-DMGC--F 292 (359)
Q Consensus 220 i~~s~S~~~~~~n~~~t~~e~l~~i~~~i~~Ak~~G~~V~~~is~~fg~~~~~r~~~----e~l~~~a~~l~-~~Ga--d 292 (359)
= +|-. ..+ ++...+++.++++|..+.+ + .+. +.....+. +.+.++.+.+. ..|+ +
T Consensus 98 s---Is~~--------~~~---e~~~~~~~~~~~~~~~vV~--m-~~~-~~g~p~t~~~~~~~~~~~~~~~~~~~gi~~~ 159 (252)
T cd00740 98 S---INLE--------DGE---ERFLKVARLAKEHGAAVVV--L-AFD-EQGQAKTRDKKVEIAERAYEALTEFVGFPPE 159 (252)
T ss_pred e---CCCC--------CCc---cccHHHHHHHHHhCCCEEE--e-ccC-CCCCCCCHHHHHHHHHHHHHHHHHHcCCCHH
Confidence 3 2211 000 1123444556778876532 2 121 11112233 34444455454 4565 3
Q ss_pred EEEEcCCCCC---CcHHH---HH---HHHHHHHHhCCCceEEE-Ee--------CCCCCcHHHHHHHHHHcCCCEE
Q 018252 293 EISLGDTIGV---GTPGT---VV---PMLEAVMAVVPVEKLAV-HL--------HDTYGQSLPNILISLQVSPMHA 350 (359)
Q Consensus 293 ~I~L~DT~G~---~~P~~---v~---~lv~~l~~~~p~~~L~~-H~--------HNd~GLAlANalaAv~AGa~~I 350 (359)
.|.+==.+|. ..+++ +. +.++.+++.+|+.++-+ +. ++.-|+-.+-...|+++|.+..
T Consensus 160 ~IiiDPgig~~~~~~~e~~~~~l~~l~~~~~~~~~~p~~pil~G~SnkSf~~~~~~r~~in~~f~~~a~~~Gl~~a 235 (252)
T cd00740 160 DIIFDPLILPIATGIEEHRPYALETIDAIRMIKERLPAVKISLGVSNVSFGFNPAAREALNSVFLYEAIKAGLDMA 235 (252)
T ss_pred HEEEeCCcccccCccHHHHHHHHHHHHHHHHHHhhCCCCCEEEEecccccCCCchhHHHHHHHHHHHHHHccccee
Confidence 4554333332 22332 22 23344455566554444 22 3333344455567788887643
No 457
>PRK08610 fructose-bisphosphate aldolase; Reviewed
Probab=86.82 E-value=9.6 Score=37.34 Aligned_cols=94 Identities=15% Similarity=0.076 Sum_probs=67.3
Q ss_pred HHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHHCCcCE-EEEcCCC-CCCc-HHHHHHHHHHHHHhCC
Q 018252 244 YRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFE-ISLGDTI-GVGT-PGTVVPMLEAVMAVVP 320 (359)
Q Consensus 244 i~~~i~~Ak~~G~~V~~~is~~fg~~~~~r~~~e~l~~~a~~l~~~Gad~-I~L~DT~-G~~~-P~~v~~lv~~l~~~~p 320 (359)
++++++.|++.|+-|- +|.+ ++.+.+..+++.+.+.+... |.+.... ..+. ...+..++..+.++.+
T Consensus 6 ~k~lL~~A~~~~yAV~-----AfN~-----~n~e~~~avi~AAee~~sPvIl~~~~~~~~~~~~~~~~~~~~~~~A~~~~ 75 (286)
T PRK08610 6 MKEMLIDAKENGYAVG-----QYNL-----NNLEFTQAILEASQEENAPVILGVSEGAARYMSGFYTVVKMVEGLMHDLN 75 (286)
T ss_pred HHHHHHHHHHCCceEE-----EEEE-----CCHHHHHHHHHHHHHHCCCEEEEcCccHHhhcCcHHHHHHHHHHHHHHcC
Confidence 5678889999998763 3432 57889999999999988764 4444332 2222 3557778877777765
Q ss_pred -CceEEEEeCCCCCcHHHHHHHHHHcCCCE
Q 018252 321 -VEKLAVHLHDTYGQSLPNILISLQVSPMH 349 (359)
Q Consensus 321 -~~~L~~H~HNd~GLAlANalaAv~AGa~~ 349 (359)
.+|+.+|. |-|..+..+..|+++|.+-
T Consensus 76 ~~vPV~lHL--DHg~~~e~i~~ai~~GftS 103 (286)
T PRK08610 76 ITIPVAIHL--DHGSSFEKCKEAIDAGFTS 103 (286)
T ss_pred CCCCEEEEC--CCCCCHHHHHHHHHcCCCE
Confidence 25777654 7777899999999999864
No 458
>COG1902 NemA NADH:flavin oxidoreductases, Old Yellow Enzyme family [Energy production and conversion]
Probab=86.79 E-value=21 Score=36.16 Aligned_cols=141 Identities=19% Similarity=0.059 Sum_probs=82.6
Q ss_pred HHHHHHcCCCEEEEecCC--------chHHHHh--hhcCCHHHHHHHHHHHHHHHHhC-CC--cEEEEEeeeecCCCCCC
Q 018252 207 FEAAIAAGAKEVAIFASA--------SEAFSKS--NINCSIEDSLVRYRAVAHAAKVL-SI--PVRGYVSCVVGCPVEGA 273 (359)
Q Consensus 207 ie~a~~aGv~~V~i~~s~--------S~~~~~~--n~~~t~~e~l~~i~~~i~~Ak~~-G~--~V~~~is~~fg~~~~~r 273 (359)
.++|.++|.|-|.|..+- |+..++. .+|-|.++-+.-..++++..|+. |. .|..-|+..-. ....-
T Consensus 155 A~rA~~AGFDgVEIH~AhGYLi~qFlsp~tN~RtD~YGGSlENR~Rf~~EVv~aVr~~vg~~~~vg~Rls~~d~-~~~~g 233 (363)
T COG1902 155 ARRAKEAGFDGVEIHGAHGYLLSQFLSPLTNKRTDEYGGSLENRARFLLEVVDAVREAVGADFPVGVRLSPDDF-FDGGG 233 (363)
T ss_pred HHHHHHcCCCEEEEeeccchHHHHhcCCccCCCCCccCCcHHHHHHHHHHHHHHHHHHhCCCceEEEEECcccc-CCCCC
Confidence 356778999988764321 2232222 35667777676677777777665 33 35555553211 12235
Q ss_pred CCHHHHHHHHHHHHHCC-cCEEEEcC--C--CCCCc---HHHHHHHHHHHHHhCCCceEEEEeCCCCCcHHHHHHHHHHc
Q 018252 274 IPPSKVAYVAKELHDMG-CFEISLGD--T--IGVGT---PGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQV 345 (359)
Q Consensus 274 ~~~e~l~~~a~~l~~~G-ad~I~L~D--T--~G~~~---P~~v~~lv~~l~~~~p~~~L~~H~HNd~GLAlANalaAv~A 345 (359)
.++++..++++.+.+.| +|-|.+.- . .+... |.-...+...+++... +++.. ........-+..+++.
T Consensus 234 ~~~~e~~~la~~L~~~G~~d~i~vs~~~~~~~~~~~~~~~~~~~~~a~~i~~~~~-~pvi~---~G~i~~~~~Ae~~l~~ 309 (363)
T COG1902 234 LTIEEAVELAKALEEAGLVDYIHVSEGGYERGGTITVSGPGYQVEFAARIKKAVR-IPVIA---VGGINDPEQAEEILAS 309 (363)
T ss_pred CCHHHHHHHHHHHHhcCCccEEEeecccccCCCCccccccchhHHHHHHHHHhcC-CCEEE---eCCCCCHHHHHHHHHc
Confidence 68899999999999999 68665543 2 11111 2233355555666543 23321 2224556677889999
Q ss_pred C-CCEEec
Q 018252 346 S-PMHAKP 352 (359)
Q Consensus 346 G-a~~ID~ 352 (359)
| ||.|-.
T Consensus 310 g~aDlVa~ 317 (363)
T COG1902 310 GRADLVAM 317 (363)
T ss_pred CCCCEEEe
Confidence 8 777654
No 459
>PRK01060 endonuclease IV; Provisional
Probab=86.72 E-value=16 Score=34.57 Aligned_cols=22 Identities=14% Similarity=0.007 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHhCCCcE
Q 018252 237 IEDSLVRYRAVAHAAKVLSIPV 258 (359)
Q Consensus 237 ~~e~l~~i~~~i~~Ak~~G~~V 258 (359)
++.+++.+++.++.|+++|.+.
T Consensus 84 r~~s~~~~~~~i~~A~~lga~~ 105 (281)
T PRK01060 84 LEKSRDFLIQEIERCAALGAKL 105 (281)
T ss_pred HHHHHHHHHHHHHHHHHcCCCE
Confidence 3455666677777777776653
No 460
>TIGR02321 Pphn_pyruv_hyd phosphonopyruvate hydrolase. This family consists of phosphonopyruvate hydrolase, an enzyme closely related to phosphoenolpyruvate phosphomutase. It cleaves the direct C-P bond of phosphonopyruvate. The characterized example is from Variovorax sp. Pal2.
Probab=86.68 E-value=15 Score=35.93 Aligned_cols=155 Identities=12% Similarity=0.114 Sum_probs=91.9
Q ss_pred HHHHHhCCCCEEEEecc--CCCCCcCC--CCCHHHHHHHhhhcC-CCeEEEEeC--C-------h-HhHHHHHHcCCCEE
Q 018252 154 IRRLVSSGLPVVEATSF--VSPKWVPQ--LADARDVMEAVRDLE-GARLPVLTP--N-------L-KGFEAAIAAGAKEV 218 (359)
Q Consensus 154 a~~L~~aGv~~IEvG~f--vspk~vPq--~~D~~ev~~~l~~~~-~~~l~~l~~--n-------~-~gie~a~~aGv~~V 218 (359)
++.+.++|++.|=++++ +...-+|- +-+.++++..++.+. -+.+.+.+. + . +-+++..++|+--|
T Consensus 28 Ari~e~aGf~ai~~ss~~va~slG~pD~g~l~~~e~~~~~~~I~~~~~lPv~aD~d~GyG~~~~v~~tV~~~~~aGvagi 107 (290)
T TIGR02321 28 AKLAEQAGFGGIWGSGFELSASYAVPDANILSMSTHLEMMRAIASTVSIPLIADIDTGFGNAVNVHYVVPQYEAAGASAI 107 (290)
T ss_pred HHHHHHcCCCEEEECHHHHHHHCCCCCcccCCHHHHHHHHHHHHhccCCCEEEECCCCCCCcHHHHHHHHHHHHcCCeEE
Confidence 45677789999988763 11122333 235677777776542 334445543 1 1 23566677899999
Q ss_pred EEecCCchHHHHhh-hc----CCHHHHHHHHHHHHHHHHhCCCcEEEEE-eeeecCCCCCCCCHHHHHHHHHHHHHCCcC
Q 018252 219 AIFASASEAFSKSN-IN----CSIEDSLVRYRAVAHAAKVLSIPVRGYV-SCVVGCPVEGAIPPSKVAYVAKELHDMGCF 292 (359)
Q Consensus 219 ~i~~s~S~~~~~~n-~~----~t~~e~l~~i~~~i~~Ak~~G~~V~~~i-s~~fg~~~~~r~~~e~l~~~a~~l~~~Gad 292 (359)
++-....+-..-+. -| .+.++..++++.+.+.. .+.++..+- +.+|. .....++.++-++...++|||
T Consensus 108 ~IEDq~~pk~cg~~~~g~~~l~~~ee~~~kI~Aa~~a~--~~~d~~I~ARTDa~~----~~~g~deAI~Ra~aY~eAGAD 181 (290)
T TIGR02321 108 VMEDKTFPKDTSLRTDGRQELVRIEEFQGKIAAATAAR--ADRDFVVIARVEALI----AGLGQQEAVRRGQAYEEAGAD 181 (290)
T ss_pred EEeCCCCCcccccccCCCccccCHHHHHHHHHHHHHhC--CCCCEEEEEEecccc----ccCCHHHHHHHHHHHHHcCCC
Confidence 99776544321110 01 36778888887776552 333321110 11110 123457888889999999999
Q ss_pred EEEEcCCCCCCcHHHHHHHHHHHH
Q 018252 293 EISLGDTIGVGTPGTVVPMLEAVM 316 (359)
Q Consensus 293 ~I~L~DT~G~~~P~~v~~lv~~l~ 316 (359)
.|.+. .+.-+|+++.++++.+.
T Consensus 182 ~ifv~--~~~~~~~ei~~~~~~~~ 203 (290)
T TIGR02321 182 AILIH--SRQKTPDEILAFVKSWP 203 (290)
T ss_pred EEEec--CCCCCHHHHHHHHHhcC
Confidence 99883 24567888888888764
No 461
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=86.68 E-value=22 Score=35.73 Aligned_cols=130 Identities=18% Similarity=0.139 Sum_probs=76.5
Q ss_pred CCHHHHHHHHHHHHhC--CCCEEEEeccCCCCCcCCCCCHHHHHHHh---h-hcCCCeEEEE-eCChHhHHHHHHcCCCE
Q 018252 145 VPTGVKVELIRRLVSS--GLPVVEATSFVSPKWVPQLADARDVMEAV---R-DLEGARLPVL-TPNLKGFEAAIAAGAKE 217 (359)
Q Consensus 145 ~~~~~k~~ia~~L~~a--Gv~~IEvG~fvspk~vPq~~D~~ev~~~l---~-~~~~~~l~~l-~~n~~gie~a~~aGv~~ 217 (359)
..+++ .+.++.|.++ |++.|-+=.- + ...+.+++.+ + ..|+..+.+= +-+.++.+.++++|+|.
T Consensus 104 ~~~~d-~er~~~L~~a~~~~d~iviD~A-h-------Ghs~~~i~~ik~ir~~~p~~~viaGNV~T~e~a~~Li~aGAD~ 174 (343)
T TIGR01305 104 SSDND-LEKMTSILEAVPQLKFICLDVA-N-------GYSEHFVEFVKLVREAFPEHTIMAGNVVTGEMVEELILSGADI 174 (343)
T ss_pred cCHHH-HHHHHHHHhcCCCCCEEEEECC-C-------CcHHHHHHHHHHHHhhCCCCeEEEecccCHHHHHHHHHcCCCE
Confidence 34444 4556666766 5998866431 1 1223333333 3 2466655444 45678999999999999
Q ss_pred EEEecCCchHHH-HhhhcCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHHCCcCEEEE
Q 018252 218 VAIFASASEAFS-KSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISL 296 (359)
Q Consensus 218 V~i~~s~S~~~~-~~n~~~t~~e~l~~i~~~i~~Ak~~G~~V~~~is~~fg~~~~~r~~~e~l~~~a~~l~~~Gad~I~L 296 (359)
|.+-+..-..+. +.+.|..+. .+..+.++.+.|+..+.+|.+ |++-... -+++|++. +||+.+.+
T Consensus 175 ikVgiGpGSicttR~~~Gvg~p-qltAv~~~a~aa~~~~v~VIa---------DGGIr~~---gDI~KALA-~GAd~VMl 240 (343)
T TIGR01305 175 VKVGIGPGSVCTTRTKTGVGYP-QLSAVIECADAAHGLKGHIIS---------DGGCTCP---GDVAKAFG-AGADFVML 240 (343)
T ss_pred EEEcccCCCcccCceeCCCCcC-HHHHHHHHHHHhccCCCeEEE---------cCCcCch---hHHHHHHH-cCCCEEEE
Confidence 888642222222 122233322 577788888888887777621 4443322 34666554 89999988
Q ss_pred c
Q 018252 297 G 297 (359)
Q Consensus 297 ~ 297 (359)
.
T Consensus 241 G 241 (343)
T TIGR01305 241 G 241 (343)
T ss_pred C
Confidence 7
No 462
>PLN02461 Probable pyruvate kinase
Probab=86.65 E-value=46 Score=35.35 Aligned_cols=160 Identities=14% Similarity=0.151 Sum_probs=97.1
Q ss_pred CCCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcCCCCCHHHHHHHhhhc-CCCeEEEEeCChHhHHHHHH--cCCCEEEE
Q 018252 144 TVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDL-EGARLPVLTPNLKGFEAAIA--AGAKEVAI 220 (359)
Q Consensus 144 ~~~~~~k~~ia~~L~~aGv~~IEvG~fvspk~vPq~~D~~ev~~~l~~~-~~~~l~~l~~n~~gie~a~~--aGv~~V~i 220 (359)
.++..++..|.+.-.+.|+|.|-+.|--++ .|..++++.+... .++.+.+=+.+..++++.-+ .-.|.|.+
T Consensus 190 ~ltekD~~di~~f~~~~~vD~ia~SFVr~a------~DV~~~r~~l~~~~~~~~IiAKIE~~~av~nl~eIi~~sDgIMV 263 (511)
T PLN02461 190 TLTEKDKEDILQWGVPNKIDFIALSFVRKG------SDLVEVRKVLGEHAKSILLISKVENQEGLDNFDDILAESDAFMV 263 (511)
T ss_pred CCCHHHHHHHHHHHhhcCCCEEEECCCCCH------HHHHHHHHHHHhCCCCCCEEEEECCHHHHHHHHHHHHhcCEEEE
Confidence 366777777767778999999977653222 4666677777542 34555555567666554332 12344444
Q ss_pred ecCCchHHHHhhhcCCHHHHHHHHHHHHHHHHhCCCcEEEE--Eeee-ecCCCCCCCCHHHHHHHHHHHHHCCcCEEEEc
Q 018252 221 FASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGY--VSCV-VGCPVEGAIPPSKVAYVAKELHDMGCFEISLG 297 (359)
Q Consensus 221 ~~s~S~~~~~~n~~~t~~e~l~~i~~~i~~Ak~~G~~V~~~--is~~-fg~~~~~r~~~e~l~~~a~~l~~~Gad~I~L~ 297 (359)
.=. ++ -+-...++....-+.+++.|+++|.+|... +... ..+| +-+..++.+++.++.+ |+|.|.|.
T Consensus 264 ARG--DL----GvEip~e~vp~~Qk~II~~c~~~gkPVIvATQmLeSMi~np---~PTRAEvsDVanAV~d-G~D~vMLS 333 (511)
T PLN02461 264 ARG--DL----GMEIPIEKIFLAQKMMIYKCNLAGKPVVTATQMLESMIKSP---RPTRAEATDVANAVLD-GTDCVMLS 333 (511)
T ss_pred ecc--cc----ccccCHHHhHHHHHHHHHHHHHcCCCeEEeehhHHHHhhCC---CCchHHHHHHHHHHHh-CCcEEEEe
Confidence 210 10 011233444444578999999999987421 1100 0122 3456677888887776 99999996
Q ss_pred -CCCCCCcHHHHHHHHHHHHHhC
Q 018252 298 -DTIGVGTPGTVVPMLEAVMAVV 319 (359)
Q Consensus 298 -DT~G~~~P~~v~~lv~~l~~~~ 319 (359)
-|+=-..|.+..+.+..+.+..
T Consensus 334 ~ETA~G~yPveaV~~m~~I~~~a 356 (511)
T PLN02461 334 GETAAGAYPELAVKTMARICREA 356 (511)
T ss_pred chhcCCCCHHHHHHHHHHHHHHH
Confidence 4666667988888887776643
No 463
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=86.60 E-value=7.9 Score=38.19 Aligned_cols=78 Identities=17% Similarity=0.131 Sum_probs=53.5
Q ss_pred CHHHHHHHHHHHHHCCcCEEEEc--C------CCCC-----CcHHHHHHHHHHHHHhCC-CceEEEEe---CCCCCcHHH
Q 018252 275 PPSKVAYVAKELHDMGCFEISLG--D------TIGV-----GTPGTVVPMLEAVMAVVP-VEKLAVHL---HDTYGQSLP 337 (359)
Q Consensus 275 ~~e~l~~~a~~l~~~Gad~I~L~--D------T~G~-----~~P~~v~~lv~~l~~~~p-~~~L~~H~---HNd~GLAlA 337 (359)
+|+.+.+.++.+.+.|+|.|.|- = .-|. -.|..+.++++++++.+| +++|.+-. .++....+.
T Consensus 73 ~p~~~~~aA~~~~~~g~d~IdiN~GCP~~~v~~~g~Gs~Ll~~~~~~~eiv~avr~~~~~~~pVsvKiR~g~~~~~~~~~ 152 (312)
T PRK10550 73 YPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQGAKAMREAVPAHLPVTVKVRLGWDSGERKFE 152 (312)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeCCCCchHHhcCCCchHhhcCHHHHHHHHHHHHHhcCCCcceEEEEECCCCCchHHHH
Confidence 78888888888888888765542 1 2232 458888899999988875 45666653 233233556
Q ss_pred HHHHHHHcCCCEEec
Q 018252 338 NILISLQVSPMHAKP 352 (359)
Q Consensus 338 NalaAv~AGa~~ID~ 352 (359)
.+..+-++|++.|.+
T Consensus 153 ~a~~l~~~Gvd~i~V 167 (312)
T PRK10550 153 IADAVQQAGATELVV 167 (312)
T ss_pred HHHHHHhcCCCEEEE
Confidence 666677889988865
No 464
>PRK00112 tgt queuine tRNA-ribosyltransferase; Provisional
Probab=86.58 E-value=11 Score=38.12 Aligned_cols=83 Identities=13% Similarity=0.081 Sum_probs=64.9
Q ss_pred CCCCCCCHHHHHHHHHHHHHCCcCEEEEcCCCCCCcHHHHHHHHHHHHHhCCC-ceEEEEeCCCCCcHH-HHHHHHHHcC
Q 018252 269 PVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPV-EKLAVHLHDTYGQSL-PNILISLQVS 346 (359)
Q Consensus 269 ~~~~r~~~e~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~lv~~l~~~~p~-~~L~~H~HNd~GLAl-ANalaAv~AG 346 (359)
+..|-..++.-.+-++++.+.+.+.+.|.--...-...++.+++..++..+|. .+. |. +|.|. .+.+.++..|
T Consensus 187 iVQGg~~~dLR~~sa~~l~~~~~~G~aIGGl~~ge~~~~~~~~v~~~~~~lp~~kPr--yl---~Gvg~P~~i~~~v~~G 261 (366)
T PRK00112 187 IVQGGVYEDLRRESAKGLVEIDFDGYAIGGLSVGEPKEEMYRILEHTAPLLPEDKPR--YL---MGVGTPEDLVEGVARG 261 (366)
T ss_pred EeeCCccHHHHHHHHHHHHhCCCceeEeccccCCCCHHHHHHHHHHHHhhCCCcCCe--Ee---cCCCCHHHHHHHHHcC
Confidence 34566778887888999999999999998854445788899999999998874 343 33 55554 5899999999
Q ss_pred CCEEeceeee
Q 018252 347 PMHAKPCFTF 356 (359)
Q Consensus 347 a~~ID~tl~~ 356 (359)
+|.+|++...
T Consensus 262 vD~FD~~~p~ 271 (366)
T PRK00112 262 VDMFDCVMPT 271 (366)
T ss_pred CCEEeeCCcc
Confidence 9999998643
No 465
>TIGR01578 MiaB-like-B MiaB-like tRNA modifying enzyme, archaeal-type. This clade is a member of a subfamily (TIGR00089) and spans the archaea and eukaryotes. The only archaeal miaB-like genes are in this clade, while eukaryotes have sequences described by this model as well as ones falling within the scope of the MiaB equivalog model.
Probab=86.54 E-value=28 Score=35.58 Aligned_cols=142 Identities=15% Similarity=0.212 Sum_probs=81.9
Q ss_pred CCCHHHHHHHHHHHHhCCCCEEEEec---cCCCCCcCCCCCHHHHHHHhhhcCC---CeEEEEeCC-h----HhHHHHHH
Q 018252 144 TVPTGVKVELIRRLVSSGLPVVEATS---FVSPKWVPQLADARDVMEAVRDLEG---ARLPVLTPN-L----KGFEAAIA 212 (359)
Q Consensus 144 ~~~~~~k~~ia~~L~~aGv~~IEvG~---fvspk~vPq~~D~~ev~~~l~~~~~---~~l~~l~~n-~----~gie~a~~ 212 (359)
..+.++.++-++.|.+.|++.|-+.. +....-.. ....++++.+..+++ +++..+-|. . +++-.++.
T Consensus 161 sr~~e~Vl~Ei~~l~~~G~~ei~l~g~d~~~yg~d~~--~~l~~Ll~~l~~i~~~~~ir~~~~~p~~~~~~~~~l~~~~~ 238 (420)
T TIGR01578 161 SYPPEKIVEKARQLVAEGCKEIWITSQDTGAYGRDIG--SRLPELLRLITEIPGEFRLRVGMMNPKNVLEILDELANVYQ 238 (420)
T ss_pred cCCHHHHHHHHHHHHHCCCeEEEEEeeccccccCCCC--cCHHHHHHHHHhCCCCcEEEEcCCCCCcccccCHHHHHHHh
Confidence 46789999999999999999886642 11100000 134555666655443 333332331 1 23333332
Q ss_pred -cC-CCEEEEec-CCchHHHHhhhcCCHHHHHHHHHHHHHHHHhC--CCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHH
Q 018252 213 -AG-AKEVAIFA-SASEAFSKSNINCSIEDSLVRYRAVAHAAKVL--SIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELH 287 (359)
Q Consensus 213 -aG-v~~V~i~~-s~S~~~~~~n~~~t~~e~l~~i~~~i~~Ak~~--G~~V~~~is~~fg~~~~~r~~~e~l~~~a~~l~ 287 (359)
.+ .+.+++.+ +.|+-- ...+|+.. ..+.+.++++.+++. |+.+..+++ +|.|.+ +.+.+.+.++.+.
T Consensus 239 ~~~~~~~l~iglQSgsd~i-L~~m~R~~--~~~~~~~~i~~i~~~~~~i~i~~~~I--vG~PgE---T~ed~~~t~~~~~ 310 (420)
T TIGR01578 239 HEKVYKFLHLPVQSGSDSV-LKEMKREY--TVSDFEDIVDKFRERFPDLTLSTDII--VGFPTE---TDDDFEETMELLR 310 (420)
T ss_pred cccccCceEeCCccCCHHH-HHhcCCCC--CHHHHHHHHHHHHHhCCCCEEEeeEE--EeCCCC---CHHHHHHHHHHHH
Confidence 23 46677765 444432 23455431 234566777788877 777777776 887766 5566677777777
Q ss_pred HCCcCEEE
Q 018252 288 DMGCFEIS 295 (359)
Q Consensus 288 ~~Gad~I~ 295 (359)
+.+.+.+.
T Consensus 311 ~~~~~~i~ 318 (420)
T TIGR01578 311 KYRPEKIN 318 (420)
T ss_pred HhCCCEEE
Confidence 77877655
No 466
>PLN02417 dihydrodipicolinate synthase
Probab=86.43 E-value=19 Score=34.73 Aligned_cols=40 Identities=13% Similarity=0.067 Sum_probs=19.6
Q ss_pred HHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHHCC
Q 018252 246 AVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMG 290 (359)
Q Consensus 246 ~~i~~Ak~~G~~V~~~is~~fg~~~~~r~~~e~l~~~a~~l~~~G 290 (359)
+.++.|++.|..-.. ...|+-.+.+.+.+.+..+.+.++.
T Consensus 87 ~~a~~a~~~Gadav~-----~~~P~y~~~~~~~i~~~f~~va~~~ 126 (280)
T PLN02417 87 HATEQGFAVGMHAAL-----HINPYYGKTSQEGLIKHFETVLDMG 126 (280)
T ss_pred HHHHHHHHcCCCEEE-----EcCCccCCCCHHHHHHHHHHHHhhC
Confidence 444555566665321 1233333445566666665555544
No 467
>PRK02227 hypothetical protein; Provisional
Probab=86.30 E-value=19 Score=34.37 Aligned_cols=149 Identities=13% Similarity=0.086 Sum_probs=0.0
Q ss_pred CCCCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcCCCCCHHHHHHHhhhc---------CCCeEEEEe---------CCh
Q 018252 143 NTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDL---------EGARLPVLT---------PNL 204 (359)
Q Consensus 143 ~~~~~~~k~~ia~~L~~aGv~~IEvG~fvspk~vPq~~D~~ev~~~l~~~---------~~~~l~~l~---------~n~ 204 (359)
.++.+.+...-+..+..+|+++|-+|.+.. .+.++..+.++.+ +...+.++- +..
T Consensus 62 ~p~~p~~~~~aa~~~a~~GvDyVKvGl~~~-------~~~~~~~~~~~~v~~a~~~~~~~~~vVav~yaD~~r~~~~~~~ 134 (238)
T PRK02227 62 VPYKPGTISLAALGAAATGADYVKVGLYGG-------KTAEEAVEVMKAVVRAVKDLDPGKIVVAAGYADAHRVGSVSPL 134 (238)
T ss_pred CCCCchHHHHHHHHHHhhCCCEEEEcCCCC-------CcHHHHHHHHHHHHHhhhhcCCCCeEEEEEecccccccCCChH
Q ss_pred HhHHHHHHcCCCEEEEecCCchHHHHhhhcCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHH
Q 018252 205 KGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAK 284 (359)
Q Consensus 205 ~gie~a~~aGv~~V~i~~s~S~~~~~~n~~~t~~e~l~~i~~~i~~Ak~~G~~V~~~is~~fg~~~~~r~~~e~l~~~a~ 284 (359)
.-.+.+.++|.+.+.+ |+..+..-+..---..+.+.++++.+|++|+.+ -.+|....+++-.+
T Consensus 135 ~l~~~a~~aGf~g~Ml-----DTa~Kdg~~Lfd~l~~~~L~~Fv~~ar~~Gl~~----------gLAGSL~~~dip~L-- 197 (238)
T PRK02227 135 SLPAIAADAGFDGAML-----DTAIKDGKSLFDHMDEEELAEFVAEARSHGLMS----------ALAGSLKFEDIPAL-- 197 (238)
T ss_pred HHHHHHHHcCCCEEEE-----ecccCCCcchHhhCCHHHHHHHHHHHHHcccHh----------HhcccCchhhHHHH--
Q ss_pred HHHHCCcC------EEEEcC-CCCCCcHHHHHHHHHHHHH
Q 018252 285 ELHDMGCF------EISLGD-TIGVGTPGTVVPMLEAVMA 317 (359)
Q Consensus 285 ~l~~~Gad------~I~L~D-T~G~~~P~~v~~lv~~l~~ 317 (359)
...++| .+|-.+ -.|...|+.|.++.+.+..
T Consensus 198 --~~l~pD~lGfRgavC~g~dR~~~id~~~V~~~~~~l~~ 235 (238)
T PRK02227 198 --KRLGPDILGVRGAVCGGGDRTGRIDPELVAELREALRA 235 (238)
T ss_pred --HhcCCCEEEechhccCCCCcccccCHHHHHHHHHHhhc
No 468
>cd00953 KDG_aldolase KDG (2-keto-3-deoxygluconate) aldolases found in archaea. This subfamily of enzymes is adapted for high thermostability and shows specificity for non-phosphorylated substrates. The enzyme catalyses the reversible aldol cleavage of 2-keto-3-dexoygluconate to pyruvate and glyceraldehyde, the third step of a modified non-phosphorylated Entner-Doudoroff pathway of glucose oxidation. KDG aldolase shows no significant sequence similarity to microbial 2-keto-3-deoxyphosphogluconate (KDPG) aldolases, and the enzyme shows no activity with glyceraldehyde 3-phosphate as substrate. The enzyme is a tetramer and a member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=86.18 E-value=17 Score=35.06 Aligned_cols=102 Identities=13% Similarity=0.068 Sum_probs=0.0
Q ss_pred HhHHHHHHcCCCEEEEecCCchHHHHhhhcCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHH
Q 018252 205 KGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAK 284 (359)
Q Consensus 205 ~gie~a~~aGv~~V~i~~s~S~~~~~~n~~~t~~e~l~~i~~~i~~Ak~~G~~V~~~is~~fg~~~~~r~~~e~l~~~a~ 284 (359)
+-++..++.|++.|-+.-++.|.+ ..|.+|-.+-++.+++.+.. |.+.+. ..+.+...++++
T Consensus 24 ~li~~l~~~Gv~Gl~~~GstGE~~-----~Lt~eEr~~l~~~~~~~~~~----vi~gvg---------~~~~~~ai~~a~ 85 (279)
T cd00953 24 KHCENLISKGIDYVFVAGTTGLGP-----SLSFQEKLELLKAYSDITDK----VIFQVG---------SLNLEESIELAR 85 (279)
T ss_pred HHHHHHHHcCCcEEEEcccCCCcc-----cCCHHHHHHHHHHHHHHcCC----EEEEeC---------cCCHHHHHHHHH
Q ss_pred HHHHCCcCEEEE--cCCCCCCcHHHHHHHHHHHHHhCCCceEEEE
Q 018252 285 ELHDMGCFEISL--GDTIGVGTPGTVVPMLEAVMAVVPVEKLAVH 327 (359)
Q Consensus 285 ~l~~~Gad~I~L--~DT~G~~~P~~v~~lv~~l~~~~p~~~L~~H 327 (359)
.+.++|+|.+.+ +--....+++.+.+.++.+.+ ++++-+.
T Consensus 86 ~a~~~Gad~v~v~~P~y~~~~~~~~i~~yf~~v~~---~lpv~iY 127 (279)
T cd00953 86 AAKSFGIYAIASLPPYYFPGIPEEWLIKYFTDISS---PYPTFIY 127 (279)
T ss_pred HHHHcCCCEEEEeCCcCCCCCCHHHHHHHHHHHHh---cCCEEEE
No 469
>cd03307 Mta_CmuA_like MtaA_CmuA_like family. MtaA/CmuA, also MtsA, or methyltransferase 2 (MT2) MT2-A and MT2-M isozymes, are methylcobamide:Coenzyme M methyltransferases, which play a role in metabolic pathways of methane formation from various substrates, such as methylated amines and methanol. Coenzyme M, 2-mercaptoethylsulfonate or CoM, is methylated during methanogenesis in a reaction catalyzed by three proteins. A methyltransferase methylates the corrinoid cofactor, which is bound to a second polypeptide, a corrinoid protein. The methylated corrinoid protein then serves as a substrate for MT2-A and related enzymes, which methylate CoM.
Probab=86.17 E-value=4.4 Score=39.73 Aligned_cols=70 Identities=14% Similarity=0.038 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHCCcCEEEEcCCCCCC---cHHHHHHHHH----HHHHhCCCceEEEEeCCCCCcHHHHHHHH-HHcCCCE
Q 018252 278 KVAYVAKELHDMGCFEISLGDTIGVG---TPGTVVPMLE----AVMAVVPVEKLAVHLHDTYGQSLPNILIS-LQVSPMH 349 (359)
Q Consensus 278 ~l~~~a~~l~~~Gad~I~L~DT~G~~---~P~~v~~lv~----~l~~~~p~~~L~~H~HNd~GLAlANalaA-v~AGa~~ 349 (359)
.+.++++...++|++.|.+.|+.|.. +|..+.+++. .+.+.+...++.+|.+.+. .+.+.. .+.|++.
T Consensus 172 ~~~~~~~~~~eaGad~i~i~d~~a~~~~isp~~f~e~~~p~~k~i~~~i~~~~~ilh~cG~~----~~~l~~~~~~g~d~ 247 (326)
T cd03307 172 ACIEYAKAQLEAGADIITIADPTASPELISPEFYEEFALPYHKKIVKELHGCPTILHICGNT----TPILEYIAQCGFDG 247 (326)
T ss_pred HHHHHHHHHHHcCCCEEEecCCCccccccCHHHHHHHHHHHHHHHHHHHhcCCcEEEECCCC----hhHHHHHHHcCCCe
Confidence 34566677778999999999988643 8999887763 3333333246777876543 223333 3468887
Q ss_pred Ee
Q 018252 350 AK 351 (359)
Q Consensus 350 ID 351 (359)
+.
T Consensus 248 ~~ 249 (326)
T cd03307 248 IS 249 (326)
T ss_pred ec
Confidence 63
No 470
>PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=86.15 E-value=16 Score=35.95 Aligned_cols=90 Identities=18% Similarity=0.167 Sum_probs=60.3
Q ss_pred HHHHHHhhh-cCCCeEEEEeCChHhHHHHHHcCCCEEEEecCCchHHHHhhhcCCHHHHHHHHHHHHHHHHhCCCcEEEE
Q 018252 183 RDVMEAVRD-LEGARLPVLTPNLKGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGY 261 (359)
Q Consensus 183 ~ev~~~l~~-~~~~~l~~l~~n~~gie~a~~aGv~~V~i~~s~S~~~~~~n~~~t~~e~l~~i~~~i~~Ak~~G~~V~~~ 261 (359)
.+.++.+++ .+..++.+-+.+.++++.|+++|+|.|.+ -|++. +.++++++..++.+..+...
T Consensus 187 ~~ai~~~r~~~~~~kIeVEv~tl~ea~eal~~gaDiI~L------------Dnm~~----e~vk~av~~~~~~~~~v~ie 250 (289)
T PRK07896 187 VAALRAVRAAAPDLPCEVEVDSLEQLDEVLAEGAELVLL------------DNFPV----WQTQEAVQRRDARAPTVLLE 250 (289)
T ss_pred HHHHHHHHHhCCCCCEEEEcCCHHHHHHHHHcCCCEEEe------------CCCCH----HHHHHHHHHHhccCCCEEEE
Confidence 333444443 46677888889999999999999999988 24444 34556666665555554322
Q ss_pred EeeeecCCCCCCCCHHHHHHHHHHHHHCCcCEEEEcCCC
Q 018252 262 VSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTI 300 (359)
Q Consensus 262 is~~fg~~~~~r~~~e~l~~~a~~l~~~Gad~I~L~DT~ 300 (359)
. .|-.+++.+.++++ .|+|.|+..--.
T Consensus 251 a--------SGGI~~~ni~~yA~----tGvD~Is~galt 277 (289)
T PRK07896 251 S--------SGGLTLDTAAAYAE----TGVDYLAVGALT 277 (289)
T ss_pred E--------ECCCCHHHHHHHHh----cCCCEEEeChhh
Confidence 2 24678887776655 899999876433
No 471
>PF04476 DUF556: Protein of unknown function (DUF556); InterPro: IPR007565 The proteins in this entry are functionally uncharacterised.
Probab=86.12 E-value=11 Score=35.80 Aligned_cols=154 Identities=15% Similarity=0.141 Sum_probs=0.0
Q ss_pred CCCCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcCCCCCHHHHHHHhhhc-CCCeEEEEeCChHh----------HHHHH
Q 018252 143 NTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDL-EGARLPVLTPNLKG----------FEAAI 211 (359)
Q Consensus 143 ~~~~~~~k~~ia~~L~~aGv~~IEvG~fvspk~vPq~~D~~ev~~~l~~~-~~~~l~~l~~n~~g----------ie~a~ 211 (359)
.++.+.....-+.....+|+++|-+|.|.....-......+.+.+.++.. ++.++++..=.... .+.+.
T Consensus 62 lp~~p~~~~~aa~~~a~~GvdyvKvGl~g~~~~~~a~e~l~~v~~av~~~~~~~~vVAv~yAD~~r~~~~~p~~l~~~a~ 141 (235)
T PF04476_consen 62 LPMKPGTASLAALGAAATGVDYVKVGLFGCKDYDEAIEALEAVVRAVKDFDPDKKVVAVGYADAQRVGSISPLDLPEIAA 141 (235)
T ss_pred CCCCchHHHHHHHHHHhcCCCEEEEecCCCCCHHHHHHHHHHHHHHHhhhCCCcEEEEEEecchhhhcCCCHHHHHHHHH
Q ss_pred HcCCCEEEEecCCchHHHHhhhcCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHHCCc
Q 018252 212 AAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGC 291 (359)
Q Consensus 212 ~aGv~~V~i~~s~S~~~~~~n~~~t~~e~l~~i~~~i~~Ak~~G~~V~~~is~~fg~~~~~r~~~e~l~~~a~~l~~~Ga 291 (359)
++|.+.+.+ +++.+..-+..---..+.+.++++.||++|+.+ ..+|....+++-.+.. .++
T Consensus 142 ~aG~~gvMl-----DTa~Kdg~~L~d~~~~~~L~~Fv~~ar~~gL~~----------aLAGSL~~~di~~L~~----l~p 202 (235)
T PF04476_consen 142 EAGFDGVML-----DTADKDGGSLFDHLSEEELAEFVAQARAHGLMC----------ALAGSLRFEDIPRLKR----LGP 202 (235)
T ss_pred HcCCCEEEE-----ecccCCCCchhhcCCHHHHHHHHHHHHHccchh----------hccccCChhHHHHHHh----cCC
Q ss_pred C------EEEEc-C-CCCCCcHHHHHHHHHHH
Q 018252 292 F------EISLG-D-TIGVGTPGTVVPMLEAV 315 (359)
Q Consensus 292 d------~I~L~-D-T~G~~~P~~v~~lv~~l 315 (359)
| .+|-. | +.|...|+.|.++-+.+
T Consensus 203 D~lGfRGAvC~ggdR~~G~id~~~V~~lr~~~ 234 (235)
T PF04476_consen 203 DILGFRGAVCGGGDRRAGRIDPELVAALRALM 234 (235)
T ss_pred CEEEechhhCCCCCcCccccCHHHHHHHHHhc
No 472
>PRK13753 dihydropteroate synthase; Provisional
Probab=86.11 E-value=6.1 Score=38.60 Aligned_cols=76 Identities=14% Similarity=0.245 Sum_probs=53.4
Q ss_pred CCCC-CCHHHHHHHHHHHHHCCcCEEEEcCCCCCCcH------HHHH---HHHHHHHHhCCCceEEEEeCCCCCcHHHHH
Q 018252 270 VEGA-IPPSKVAYVAKELHDMGCFEISLGDTIGVGTP------GTVV---PMLEAVMAVVPVEKLAVHLHDTYGQSLPNI 339 (359)
Q Consensus 270 ~~~r-~~~e~l~~~a~~l~~~Gad~I~L~DT~G~~~P------~~v~---~lv~~l~~~~p~~~L~~H~HNd~GLAlANa 339 (359)
|+|+ .+++...+-++.+.+.|||.|-+.=-..--.+ +++. ..++++++. ..+|++ ||+--.++
T Consensus 17 DGg~~~~~d~a~~~a~~m~~~GAdIIDIGgeSTrPga~~vs~eeE~~Rv~pvI~~l~~~--~~~ISI---DT~~~~va-- 89 (279)
T PRK13753 17 DESRRLDPAGAVTAAIEMLRVGSDVVDVGPAASHPDARPVSPADEIRRIAPLLDALSDQ--MHRVSI---DSFQPETQ-- 89 (279)
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCcEEEECCCCCCCCCCcCCHHHHHHHHHHHHHHHHhC--CCcEEE---ECCCHHHH--
Confidence 5666 48899999999999999999988754432222 2455 666666654 246666 66666654
Q ss_pred HHHHHcCCCEEec
Q 018252 340 LISLQVSPMHAKP 352 (359)
Q Consensus 340 laAv~AGa~~ID~ 352 (359)
.+|+++||++|.-
T Consensus 90 ~~al~aGadiIND 102 (279)
T PRK13753 90 RYALKRGVGYLND 102 (279)
T ss_pred HHHHHcCCCEEEe
Confidence 5889999999863
No 473
>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=85.96 E-value=5.4 Score=39.05 Aligned_cols=80 Identities=14% Similarity=0.037 Sum_probs=69.3
Q ss_pred CCCCHHHHHHHHHHHHHCCcCEEEEcCCCCC---CcHHHHHHHHHHHHHhCCC-ceEEE-EeCCCCCcHHHHHHHHHHcC
Q 018252 272 GAIPPSKVAYVAKELHDMGCFEISLGDTIGV---GTPGTVVPMLEAVMAVVPV-EKLAV-HLHDTYGQSLPNILISLQVS 346 (359)
Q Consensus 272 ~r~~~e~l~~~a~~l~~~Gad~I~L~DT~G~---~~P~~v~~lv~~l~~~~p~-~~L~~-H~HNd~GLAlANalaAv~AG 346 (359)
+..|.+-+.++++.+.+.|++.|.++=|.|= +++++-.++++.+++...+ +++-. .+.|+..-+++.+..|-+.|
T Consensus 20 g~vD~~a~~~lv~~li~~Gv~gi~~~GttGE~~~Ls~eEr~~v~~~~v~~~~grvpviaG~g~~~t~eai~lak~a~~~G 99 (299)
T COG0329 20 GSVDEEALRRLVEFLIAAGVDGLVVLGTTGESPTLTLEERKEVLEAVVEAVGGRVPVIAGVGSNSTAEAIELAKHAEKLG 99 (299)
T ss_pred CCcCHHHHHHHHHHHHHcCCCEEEECCCCccchhcCHHHHHHHHHHHHHHHCCCCcEEEecCCCcHHHHHHHHHHHHhcC
Confidence 6799999999999999999999999999994 5688888888888887643 44444 78899999999999999999
Q ss_pred CCEEe
Q 018252 347 PMHAK 351 (359)
Q Consensus 347 a~~ID 351 (359)
|+.|=
T Consensus 100 ad~il 104 (299)
T COG0329 100 ADGIL 104 (299)
T ss_pred CCEEE
Confidence 98764
No 474
>PRK06806 fructose-bisphosphate aldolase; Provisional
Probab=85.93 E-value=13 Score=36.13 Aligned_cols=96 Identities=13% Similarity=0.106 Sum_probs=68.2
Q ss_pred HHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHHCCcC-EEEEcCCCCC-CcHHHHHHHHHHHHHhCC
Q 018252 243 RYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCF-EISLGDTIGV-GTPGTVVPMLEAVMAVVP 320 (359)
Q Consensus 243 ~i~~~i~~Ak~~G~~V~~~is~~fg~~~~~r~~~e~l~~~a~~l~~~Gad-~I~L~DT~G~-~~P~~v~~lv~~l~~~~p 320 (359)
.++++++.|++.|+-|- +|.+ ++.+.+..+++.+.+.+.. .|.+....-- .....+..++..+.+...
T Consensus 5 ~~~~~l~~A~~~~yaV~-----Afn~-----~n~e~~~avi~aAe~~~~Pvii~~~~~~~~~~~~~~~~~~~~~~a~~~~ 74 (281)
T PRK06806 5 QMKELLKKANQENYGVG-----AFSV-----ANMEMVMGAIKAAEELNSPIILQIAEVRLNHSPLHLIGPLMVAAAKQAK 74 (281)
T ss_pred cHHHHHHHHHHCCceEE-----EEEe-----CCHHHHHHHHHHHHHhCCCEEEEcCcchhccCChHHHHHHHHHHHHHCC
Confidence 35688899999999773 3432 5788999999999988865 4555543322 223445667766666665
Q ss_pred CceEEEEeCCCCCcHHHHHHHHHHcCCCEEe
Q 018252 321 VEKLAVHLHDTYGQSLPNILISLQVSPMHAK 351 (359)
Q Consensus 321 ~~~L~~H~HNd~GLAlANalaAv~AGa~~ID 351 (359)
+|+.+|. |-|.-+..+..|+++|++.|-
T Consensus 75 -vpv~lHl--DH~~~~e~i~~Al~~G~tsVm 102 (281)
T PRK06806 75 -VPVAVHF--DHGMTFEKIKEALEIGFTSVM 102 (281)
T ss_pred -CCEEEEC--CCCCCHHHHHHHHHcCCCEEE
Confidence 5777765 557788999999999998763
No 475
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=85.86 E-value=11 Score=35.23 Aligned_cols=76 Identities=16% Similarity=0.092 Sum_probs=39.1
Q ss_pred HhHHHHHHcCCCEEEEecCCchHHHHhhhcCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCC-CC---C--C---
Q 018252 205 KGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVE-GA---I--P--- 275 (359)
Q Consensus 205 ~gie~a~~aGv~~V~i~~s~S~~~~~~n~~~t~~e~l~~i~~~i~~Ak~~G~~V~~~is~~fg~~~~-~r---~--~--- 275 (359)
+-++.+.++|.+.|.+..+. ..+ +.++.+.++++|+++.. ++..++.... .+ . +
T Consensus 18 e~~~~~~e~G~~~vEl~~~~---------~~~-------~~~l~~~l~~~gl~v~~-~~~~~~~~~~~~~~~~~~~~~~~ 80 (254)
T TIGR03234 18 ERFAAAAQAGFTGVEYLFPY---------DWD-------AEALKARLAAAGLEQVL-FNLPAGDWAAGERGIACLPGREE 80 (254)
T ss_pred HHHHHHHHcCCCEEEecCCc---------cCC-------HHHHHHHHHHcCCeEEE-EeCCCCccccCCCccccCCccHH
Confidence 34666777888888775431 111 23444556678887743 2111111000 00 0 0
Q ss_pred --HHHHHHHHHHHHHCCcCEEEEc
Q 018252 276 --PSKVAYVAKELHDMGCFEISLG 297 (359)
Q Consensus 276 --~e~l~~~a~~l~~~Gad~I~L~ 297 (359)
.+.+.+.++.+.++|+..|.+.
T Consensus 81 ~~~~~~~~~i~~a~~lg~~~i~~~ 104 (254)
T TIGR03234 81 EFREGVALAIAYARALGCPQVNCL 104 (254)
T ss_pred HHHHHHHHHHHHHHHhCCCEEEEC
Confidence 1344456666777888877764
No 476
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=85.81 E-value=14 Score=36.55 Aligned_cols=116 Identities=18% Similarity=0.172 Sum_probs=71.2
Q ss_pred HHHHHHHHHHHHHHHhCCCcEEEEEeeeecC---------CC---------------C--CCCCH-------HHHHHHHH
Q 018252 238 EDSLVRYRAVAHAAKVLSIPVRGYVSCVVGC---------PV---------------E--GAIPP-------SKVAYVAK 284 (359)
Q Consensus 238 ~e~l~~i~~~i~~Ak~~G~~V~~~is~~fg~---------~~---------------~--~r~~~-------e~l~~~a~ 284 (359)
++.++.++++++.++++|-++.+.|.+. |. +. . ...+. +.+.+.++
T Consensus 78 d~~i~~~~~l~~~vh~~G~~~~~Ql~h~-G~~~~~~~~~~~~~ps~~~~~~~~~~~~~~p~~mt~~eI~~~i~~~~~aA~ 156 (338)
T cd04733 78 GEDLEAFREWAAAAKANGALIWAQLNHP-GRQSPAGLNQNPVAPSVALDPGGLGKLFGKPRAMTEEEIEDVIDRFAHAAR 156 (338)
T ss_pred HHHHHHHHHHHHHHHhcCCEEEEEccCC-CcCCCccCCCCCcCCCCCcCcccccccCCCCCcCCHHHHHHHHHHHHHHHH
Confidence 5567778888888888888776655441 10 00 0 01122 34556677
Q ss_pred HHHHCCcCEEEE--c-----------------CCCCCCc---HHHHHHHHHHHHHhCC-CceEEEEeCC----CCCcH--
Q 018252 285 ELHDMGCFEISL--G-----------------DTIGVGT---PGTVVPMLEAVMAVVP-VEKLAVHLHD----TYGQS-- 335 (359)
Q Consensus 285 ~l~~~Gad~I~L--~-----------------DT~G~~~---P~~v~~lv~~l~~~~p-~~~L~~H~HN----d~GLA-- 335 (359)
++.++|.|.|.| + |-.|-.. +..+.++++++|+.++ +.+|++-.+- ..|+.
T Consensus 157 ra~~aGfDgVeih~a~gyLl~qFlsp~~N~R~D~yGGslenR~rf~~EiI~aIR~avG~d~~v~vris~~~~~~~g~~~e 236 (338)
T cd04733 157 LAQEAGFDGVQIHAAHGYLLSQFLSPLTNKRTDEYGGSLENRARLLLEIYDAIRAAVGPGFPVGIKLNSADFQRGGFTEE 236 (338)
T ss_pred HHHHcCCCEEEEchhhhhHHHHhcCCcCCCCCccCCCCHHHHHHHHHHHHHHHHHHcCCCCeEEEEEcHHHcCCCCCCHH
Confidence 788899998776 2 3344332 5556788999999885 5678887762 12332
Q ss_pred --HHHHHHHHHcCCCEEecee
Q 018252 336 --LPNILISLQVSPMHAKPCF 354 (359)
Q Consensus 336 --lANalaAv~AGa~~ID~tl 354 (359)
+.-+-..-++|+++|+++.
T Consensus 237 ea~~ia~~Le~~Gvd~iev~~ 257 (338)
T cd04733 237 DALEVVEALEEAGVDLVELSG 257 (338)
T ss_pred HHHHHHHHHHHcCCCEEEecC
Confidence 2222233467999999653
No 477
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=85.79 E-value=35 Score=32.93 Aligned_cols=98 Identities=18% Similarity=0.131 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHhC-CCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHHCCcCEEEEcCCCC-------------------
Q 018252 242 VRYRAVAHAAKVL-SIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIG------------------- 301 (359)
Q Consensus 242 ~~i~~~i~~Ak~~-G~~V~~~is~~fg~~~~~r~~~e~l~~~a~~l~~~Gad~I~L~DT~G------------------- 301 (359)
+.+.++++.+|+. ++.|.+-+. .+.+...++++.+.++|+|.|.+-.|+.
T Consensus 143 ~~~~eiv~~vr~~~~~pv~vKi~----------~~~~~~~~~a~~l~~~G~d~i~v~nt~~~~~~~~~~~~~~~~~~~gg 212 (300)
T TIGR01037 143 ELSADVVKAVKDKTDVPVFAKLS----------PNVTDITEIAKAAEEAGADGLTLINTLRGMKIDIKTGKPILANKTGG 212 (300)
T ss_pred HHHHHHHHHHHHhcCCCEEEECC----------CChhhHHHHHHHHHHcCCCEEEEEccCCccccccccCceeeCCCCcc
Confidence 3455666666654 566644442 2445778999999999999998865432
Q ss_pred CCcHHH---HHHHHHHHHHhCCCceEEEEeCCCCCcHHHHHHHHHHcCCCEEece
Q 018252 302 VGTPGT---VVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQVSPMHAKPC 353 (359)
Q Consensus 302 ~~~P~~---v~~lv~~l~~~~p~~~L~~H~HNd~GLAlANalaAv~AGa~~ID~t 353 (359)
+.-|.. ..+.+..+++.++ ++|-.=+-- .....+..++++||+.|-.+
T Consensus 213 ~sg~~~~~~~l~~v~~i~~~~~-ipvi~~GGI---~s~~da~~~l~~GAd~V~ig 263 (300)
T TIGR01037 213 LSGPAIKPIALRMVYDVYKMVD-IPIIGVGGI---TSFEDALEFLMAGASAVQVG 263 (300)
T ss_pred ccchhhhHHHHHHHHHHHhcCC-CCEEEECCC---CCHHHHHHHHHcCCCceeec
Confidence 111211 2366777777665 344331111 12356778888999987654
No 478
>cd06810 PLPDE_III_ODC_DapDC_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, Ornithine and Diaminopimelate Decarboxylases, and Related Enzymes. This family includes eukaryotic ornithine decarboxylase (ODC, EC 4.1.1.17), diaminopimelate decarboxylase (DapDC, EC 4.1.1.20), plant and prokaryotic biosynthetic arginine decarboxylase (ADC, EC 4.1.1.19), carboxynorspermidine decarboxylase (CANSDC), and ODC-like enzymes from diverse bacterial species. These proteins are fold type III PLP-dependent enzymes that catalyze essential steps in the biosynthesis of polyamine and lysine. ODC and ADC participate in alternative pathways of the biosynthesis of putrescine, which is the precursor of aliphatic polyamines in many organisms. ODC catalyzes the direct synthesis of putrescine from L-ornithine, while ADC converts L-arginine to agmatine, which is hydrolysed to putrescine by agmatinase in a pathway that exists only in plants and bacteria. DapDC converts meso-2,6-diaminoheptanedioate to
Probab=85.67 E-value=17 Score=35.83 Aligned_cols=135 Identities=19% Similarity=0.220 Sum_probs=71.0
Q ss_pred HHHHHHHHhCCCCEEEEeccCCCCCcCCCCCHHHHHHHhhh-cCCCeEEEEeC--ChHhHHHHHHcCCCEEEEecCCchH
Q 018252 151 VELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRD-LEGARLPVLTP--NLKGFEAAIAAGAKEVAIFASASEA 227 (359)
Q Consensus 151 ~~ia~~L~~aGv~~IEvG~fvspk~vPq~~D~~ev~~~l~~-~~~~~l~~l~~--n~~gie~a~~aGv~~V~i~~s~S~~ 227 (359)
.++++.|.+.|. .+++.+. .|+....+. .++..+..-.| +.++++.+++.|+..+.+
T Consensus 38 ~~i~~~l~~~G~-g~~vas~------------~E~~~~~~~G~~~~~iv~~gp~~~~~~l~~~~~~~~~~~~v------- 97 (368)
T cd06810 38 PHVLRTLAEAGT-GFDVASK------------GELALALAAGVPPERIIFTGPAKSVSEIEAALASGVDHIVV------- 97 (368)
T ss_pred HHHHHHHHHcCC-cEEEeCH------------HHHHHHHHcCCCHHHEEEcCCCCCHHHHHHHHHCCCCEEEe-------
Confidence 578888999998 7777652 333333332 22222222223 457888888887533333
Q ss_pred HHHhhhcCCHHHHHHHHHHHHHHHHhCCCc--EEEEEeeeec--------CCCCCC--CCHHHHHHHHHHHHHCCcCEEE
Q 018252 228 FSKSNINCSIEDSLVRYRAVAHAAKVLSIP--VRGYVSCVVG--------CPVEGA--IPPSKVAYVAKELHDMGCFEIS 295 (359)
Q Consensus 228 ~~~~n~~~t~~e~l~~i~~~i~~Ak~~G~~--V~~~is~~fg--------~~~~~r--~~~e~l~~~a~~l~~~Gad~I~ 295 (359)
+.++.++.+.+.++++|.+ |...|..... +...+| .+++++.++++.+.+.+..-..
T Consensus 98 -----------ds~~el~~l~~~~~~~~~~~~v~lrin~g~~~~~~~~~~~~~~srfGi~~~e~~~~~~~~~~~~l~l~G 166 (368)
T cd06810 98 -----------DSLDELERLNELAKKLGPKARILLRVNPDVSAGTHKISTGGLKSKFGLSLSEARAALERAKELDLRLVG 166 (368)
T ss_pred -----------CCHHHHHHHHHHHHHhCCCCeEEEEECCCCCCCcccCccCCCCCCcCCCHHHHHHHHHHHHhCCCcEEE
Confidence 1123334444455555543 3333321110 001133 4677888888888887766555
Q ss_pred EcCCCCCC--cHHHHHHHHHHHH
Q 018252 296 LGDTIGVG--TPGTVVPMLEAVM 316 (359)
Q Consensus 296 L~DT~G~~--~P~~v~~lv~~l~ 316 (359)
|.=.+|.. .++.+.+.++.+.
T Consensus 167 l~~H~gs~~~d~~~~~~~~~~~~ 189 (368)
T cd06810 167 LHFHVGSQILDLETIVQALSDAR 189 (368)
T ss_pred EEEcCCcCCCCHHHHHHHHHHHH
Confidence 55444443 4666665555444
No 479
>PRK05927 hypothetical protein; Provisional
Probab=85.67 E-value=2.4 Score=42.49 Aligned_cols=78 Identities=13% Similarity=0.089 Sum_probs=59.0
Q ss_pred CCCHHHHHHHHHHHHHCCcCEEEEcCCCCCCc---HHHHHHHHHHHHHhCCCceE------EE-EeCCCCCcHHHHHHHH
Q 018252 273 AIPPSKVAYVAKELHDMGCFEISLGDTIGVGT---PGTVVPMLEAVMAVVPVEKL------AV-HLHDTYGQSLPNILIS 342 (359)
Q Consensus 273 r~~~e~l~~~a~~l~~~Gad~I~L~DT~G~~~---P~~v~~lv~~l~~~~p~~~L------~~-H~HNd~GLAlANalaA 342 (359)
..+++++.+.++++.+.|+.+|.| +.|... .+.+.++++.+++.+|++.+ ++ |.--..|+...-.+..
T Consensus 75 ~ls~eei~~~a~~~~~~G~~~i~i--~gG~~p~~~~e~~~~~i~~ik~~~p~l~~~~~s~~ei~~~~~~~G~~~~e~l~~ 152 (350)
T PRK05927 75 LLSFDEFRSLMQRYVSAGVKTVLL--QGGVHPQLGIDYLEELVRITVKEFPSLHPHFFSAVEIAHAAQVSGISTEQALER 152 (350)
T ss_pred ccCHHHHHHHHHHHHHCCCCEEEE--eCCCCCCCCHHHHHHHHHHHHHHCCCCcccCCCHHHHHHHHHhcCCCHHHHHHH
Confidence 468999999999999999999998 566542 34677888999988886421 11 3345569999988887
Q ss_pred HH-cCCCEEec
Q 018252 343 LQ-VSPMHAKP 352 (359)
Q Consensus 343 v~-AGa~~ID~ 352 (359)
++ ||++.+.+
T Consensus 153 Lk~aGl~~l~g 163 (350)
T PRK05927 153 LWDAGQRTIPG 163 (350)
T ss_pred HHHcCcccCCC
Confidence 76 99987665
No 480
>PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds []. Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A.
Probab=85.62 E-value=3.6 Score=39.38 Aligned_cols=124 Identities=15% Similarity=0.055 Sum_probs=0.0
Q ss_pred HHHHHHcCCCEEEEecCCchHHHHhhhcCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHH
Q 018252 207 FEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKEL 286 (359)
Q Consensus 207 ie~a~~aGv~~V~i~~s~S~~~~~~n~~~t~~e~l~~i~~~i~~Ak~~G~~V~~~is~~fg~~~~~r~~~e~l~~~a~~l 286 (359)
++.+.+.|.+.|-+....-++- .+.-.++|+.+++.|++|-..+- .-........+++.+++.+++-
T Consensus 90 l~~~k~lGf~~IEiSdGti~l~------------~~~r~~~I~~~~~~Gf~v~~EvG-~K~~~~~~~~~~~~~i~~~~~d 156 (244)
T PF02679_consen 90 LEECKELGFDAIEISDGTIDLP------------EEERLRLIRKAKEEGFKVLSEVG-KKDPESDFSLDPEELIEQAKRD 156 (244)
T ss_dssp HHHHHHCT-SEEEE--SSS---------------HHHHHHHHHHHCCTTSEEEEEES--SSHHHHTT--CCHHHHHHHHH
T ss_pred HHHHHHcCCCEEEecCCceeCC------------HHHHHHHHHHHHHCCCEEeeccc-CCCchhcccCCHHHHHHHHHHH
Q ss_pred HHCCcCEE----------EEcCCCCCCcHHHHHHHHH------------------HHHHhC-CCceEEEEeCCCCCcHHH
Q 018252 287 HDMGCFEI----------SLGDTIGVGTPGTVVPMLE------------------AVMAVV-PVEKLAVHLHDTYGQSLP 337 (359)
Q Consensus 287 ~~~Gad~I----------~L~DT~G~~~P~~v~~lv~------------------~l~~~~-p~~~L~~H~HNd~GLAlA 337 (359)
.++||+.| .+.|..|-.....+.++++ .+.+++ |++.|+.=.|.+ .
T Consensus 157 LeAGA~~ViiEarEsG~~Gi~~~~g~~r~d~v~~i~~~~~~~~lifEAp~k~qq~~~I~~~G~~VNLgNI~~~e-----V 231 (244)
T PF02679_consen 157 LEAGADKVIIEARESGKGGIYDNDGEVRTDLVEKIIERLGLEKLIFEAPQKEQQEWFIKRFGPNVNLGNIAPSE-----V 231 (244)
T ss_dssp HHHTECEEEE--TTT--STTB-TTS-B-HHHHHHHHTTS-GGGEEEE--SHHHHHHHHHHH-TT--EEEEEGGG-----H
T ss_pred HHCCCCEEEEeeeccCCCCccCCCCCccHHHHHHHHHhCCHhHEEEeCCCHhHHHHHHHHhCCCcCcccCCHHH-----H
Q ss_pred HHHHHHHcCCC
Q 018252 338 NILISLQVSPM 348 (359)
Q Consensus 338 NalaAv~AGa~ 348 (359)
-+|++++.|-+
T Consensus 232 l~LE~LR~GLr 242 (244)
T PF02679_consen 232 LALETLRRGLR 242 (244)
T ss_dssp HHHHHHHCT-S
T ss_pred HHHHHHhcccc
No 481
>PRK08091 ribulose-phosphate 3-epimerase; Validated
Probab=85.58 E-value=33 Score=32.49 Aligned_cols=143 Identities=13% Similarity=0.081 Sum_probs=82.6
Q ss_pred HHHHHHHHHHhCCCCEEEEeccCCCCCcCCCCCHHHHHHHhhhcC-CCeE-EEEeCC--hHhHHHHHHcCCCEEEEecCC
Q 018252 149 VKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLE-GARL-PVLTPN--LKGFEAAIAAGAKEVAIFASA 224 (359)
Q Consensus 149 ~k~~ia~~L~~aGv~~IEvG~fvspk~vPq~~D~~ev~~~l~~~~-~~~l-~~l~~n--~~gie~a~~aGv~~V~i~~s~ 224 (359)
.-.++++.+.++|.+.|-+=+=+. .+..+.++.+++.- +++. .++.|. .+.++..+. -+|.|.+. ++
T Consensus 79 ~P~~~i~~~~~aGad~It~H~Ea~-------~~~~~~l~~Ik~~g~~~kaGlalnP~Tp~~~i~~~l~-~vD~VLiM-tV 149 (228)
T PRK08091 79 DQFEVAKACVAAGADIVTLQVEQT-------HDLALTIEWLAKQKTTVLIGLCLCPETPISLLEPYLD-QIDLIQIL-TL 149 (228)
T ss_pred CHHHHHHHHHHhCCCEEEEcccCc-------ccHHHHHHHHHHCCCCceEEEEECCCCCHHHHHHHHh-hcCEEEEE-EE
Confidence 345688899999999885433111 23444555555432 1243 455563 366666654 35666553 33
Q ss_pred chHHHHhhhcCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHHCCcCEEEEcCCCCCCc
Q 018252 225 SEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGVGT 304 (359)
Q Consensus 225 S~~~~~~n~~~t~~e~l~~i~~~i~~Ak~~G~~V~~~is~~fg~~~~~r~~~e~l~~~a~~l~~~Gad~I~L~DT~G~~~ 304 (359)
.+-|.-..+ .++.+++++++.++.+++|+.+...+ | |-.+.+ -++.+.++|||.+... |. +..
T Consensus 150 ~PGfgGQ~f---~~~~l~KI~~lr~~~~~~~~~~~IeV-------D-GGI~~~----ti~~l~~aGaD~~V~G-Sa-lF~ 212 (228)
T PRK08091 150 DPRTGTKAP---SDLILDRVIQVENRLGNRRVEKLISI-------D-GSMTLE----LASYLKQHQIDWVVSG-SA-LFS 212 (228)
T ss_pred CCCCCCccc---cHHHHHHHHHHHHHHHhcCCCceEEE-------E-CCCCHH----HHHHHHHCCCCEEEEC-hh-hhC
Confidence 444432222 45788899888888888887653322 2 334443 4567788999988876 32 322
Q ss_pred HHHHHHHHHHHHH
Q 018252 305 PGTVVPMLEAVMA 317 (359)
Q Consensus 305 P~~v~~lv~~l~~ 317 (359)
-.+..+.++.++.
T Consensus 213 ~~d~~~~i~~l~~ 225 (228)
T PRK08091 213 QGELKTTLKEWKS 225 (228)
T ss_pred CCCHHHHHHHHHH
Confidence 2235666666654
No 482
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=85.53 E-value=22 Score=36.54 Aligned_cols=132 Identities=13% Similarity=0.097 Sum_probs=76.0
Q ss_pred HHHHHHHHHHHhCCCCEEEEeccCCCCCcCCCCCHHHHHHHhhh-cCCCeE-EEEeCChHhHHHHHHcCCCEEEEec-CC
Q 018252 148 GVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRD-LEGARL-PVLTPNLKGFEAAIAAGAKEVAIFA-SA 224 (359)
Q Consensus 148 ~~k~~ia~~L~~aGv~~IEvG~fvspk~vPq~~D~~ev~~~l~~-~~~~~l-~~l~~n~~gie~a~~aGv~~V~i~~-s~ 224 (359)
.+-.+.++.|.++|++.|-+=.- ++ ......+.++.+++ .|+..+ .+-+-+.++.+.++++|+|-|.+-. +-
T Consensus 152 ~~~~~~v~~lv~aGvDvI~iD~a-~g----~~~~~~~~v~~ik~~~p~~~vi~g~V~T~e~a~~l~~aGaD~I~vG~g~G 226 (404)
T PRK06843 152 IDTIERVEELVKAHVDILVIDSA-HG----HSTRIIELVKKIKTKYPNLDLIAGNIVTKEAALDLISVGADCLKVGIGPG 226 (404)
T ss_pred HHHHHHHHHHHhcCCCEEEEECC-CC----CChhHHHHHHHHHhhCCCCcEEEEecCCHHHHHHHHHcCCCEEEECCCCC
Confidence 34678999999999999865321 11 01233344555553 567665 3356788999999999999988632 22
Q ss_pred chHHHHhhhcCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHHCCcCEEEEcC
Q 018252 225 SEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGD 298 (359)
Q Consensus 225 S~~~~~~n~~~t~~e~l~~i~~~i~~Ak~~G~~V~~~is~~fg~~~~~r~~~e~l~~~a~~l~~~Gad~I~L~D 298 (359)
|--..+...+.... .+..+..+.+.+++.+++|.+ +++-.++.. +++ +..+||+.+.+.-
T Consensus 227 s~c~tr~~~g~g~p-~ltai~~v~~~~~~~~vpVIA---------dGGI~~~~D---i~K-ALalGA~aVmvGs 286 (404)
T PRK06843 227 SICTTRIVAGVGVP-QITAICDVYEVCKNTNICIIA---------DGGIRFSGD---VVK-AIAAGADSVMIGN 286 (404)
T ss_pred cCCcceeecCCCCC-hHHHHHHHHHHHhhcCCeEEE---------eCCCCCHHH---HHH-HHHcCCCEEEEcc
Confidence 21111212222111 234444555566666776521 345556655 444 4458999887653
No 483
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=85.42 E-value=21 Score=33.56 Aligned_cols=107 Identities=13% Similarity=0.058 Sum_probs=54.1
Q ss_pred hHHHHHHcCCCEEEEecCCchHHHHhhhcCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCC--------C---
Q 018252 206 GFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGA--------I--- 274 (359)
Q Consensus 206 gie~a~~aGv~~V~i~~s~S~~~~~~n~~~t~~e~l~~i~~~i~~Ak~~G~~V~~~is~~fg~~~~~r--------~--- 274 (359)
-++.+.++|.+.|.+..+. .. ...++.+.++++|+++... ...++....+. .
T Consensus 20 ~l~~~a~~Gf~~VEl~~~~---------~~-------~~~~~~~~l~~~gl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 82 (258)
T PRK09997 20 RFEKAAQCGFRGVEFMFPY---------DY-------DIEELKQVLASNKLEHTLH-NLPAGDWAAGERGIACIPGREEE 82 (258)
T ss_pred HHHHHHHhCCCEEEEcCCC---------CC-------CHHHHHHHHHHcCCcEEEE-cCCCCccccCcCccccCCCcHHH
Confidence 4667777888888875321 01 1334455566788887431 10111110000 0
Q ss_pred CHHHHHHHHHHHHHCCcCEEEEcCCCCC----CcHHH-HHHHHHHHHHh---C--CCceEEEEeCCC
Q 018252 275 PPSKVAYVAKELHDMGCFEISLGDTIGV----GTPGT-VVPMLEAVMAV---V--PVEKLAVHLHDT 331 (359)
Q Consensus 275 ~~e~l~~~a~~l~~~Gad~I~L~DT~G~----~~P~~-v~~lv~~l~~~---~--p~~~L~~H~HNd 331 (359)
..+.+.+.++.+.++|+..|.+. .|. ..+.+ ...+++.+++. . -++.|++|.||.
T Consensus 83 ~~~~~~~~i~~a~~lga~~i~~~--~g~~~~~~~~~~~~~~~~~~l~~l~~~a~~~Gv~l~lE~~n~ 147 (258)
T PRK09997 83 FRDGVAAAIRYARALGNKKINCL--VGKTPAGFSSEQIHATLVENLRYAANMLMKEDILLLIEPINH 147 (258)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEC--CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeCCC
Confidence 12346667777778888877663 222 22333 23333333321 1 247888888764
No 484
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=85.24 E-value=5.4 Score=33.41 Aligned_cols=76 Identities=13% Similarity=0.048 Sum_probs=43.1
Q ss_pred HHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHHCCcCEEEEcCCCCCCcHHHHHHHHHHHHHhCCCceEEEEe
Q 018252 249 HAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHL 328 (359)
Q Consensus 249 ~~Ak~~G~~V~~~is~~fg~~~~~r~~~e~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~lv~~l~~~~p~~~L~~H~ 328 (359)
+.+++.|++...++- |+...-+.-...++.+.+.++|..-+.++=+.|-.+++.+..+.+.+.. .|. |+-+||
T Consensus 21 ~~la~~GfktVInlR-----pd~E~~~qp~~~~~~~~a~~~Gl~y~~iPv~~~~~~~~~v~~f~~~l~~-~~~-Pvl~hC 93 (110)
T PF04273_consen 21 AQLAAQGFKTVINLR-----PDGEEPGQPSSAEEAAAAEALGLQYVHIPVDGGAITEEDVEAFADALES-LPK-PVLAHC 93 (110)
T ss_dssp HHHHHCT--EEEE-S------TTSTTT-T-HHCHHHHHHHCT-EEEE----TTT--HHHHHHHHHHHHT-TTT-SEEEE-
T ss_pred HHHHHCCCcEEEECC-----CCCCCCCCCCHHHHHHHHHHcCCeEEEeecCCCCCCHHHHHHHHHHHHh-CCC-CEEEEC
Confidence 455679999866663 3322111113445677788999999999999999999999999887665 565 888887
Q ss_pred CCC
Q 018252 329 HDT 331 (359)
Q Consensus 329 HNd 331 (359)
.-.
T Consensus 94 ~sG 96 (110)
T PF04273_consen 94 RSG 96 (110)
T ss_dssp SCS
T ss_pred CCC
Confidence 653
No 485
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=85.14 E-value=31 Score=31.75 Aligned_cols=179 Identities=16% Similarity=0.073 Sum_probs=92.3
Q ss_pred HHHHHHHHHHHhCCCCEEEEeccCCCCCcCCCCCHHHHHHHhhhcC-CCeEEEEeCChHhHHHHHHcCCCEEEEecCCch
Q 018252 148 GVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLE-GARLPVLTPNLKGFEAAIAAGAKEVAIFASASE 226 (359)
Q Consensus 148 ~~k~~ia~~L~~aGv~~IEvG~fvspk~vPq~~D~~ev~~~l~~~~-~~~l~~l~~n~~gie~a~~aGv~~V~i~~s~S~ 226 (359)
.+-.++++.+.+.|++.+.+.-..... -..-.+.+.+.+..+... .+.+-+-+++.+++++++++|++.|.+-..
T Consensus 30 ~~~~~~a~~~~~~g~~~i~v~dld~~~-~g~~~~~~~i~~i~~~~~~pv~~~GGI~~~ed~~~~~~~Ga~~vilg~~--- 105 (233)
T PRK00748 30 DDPVAQAKAWEDQGAKWLHLVDLDGAK-AGKPVNLELIEAIVKAVDIPVQVGGGIRSLETVEALLDAGVSRVIIGTA--- 105 (233)
T ss_pred CCHHHHHHHHHHcCCCEEEEEeCCccc-cCCcccHHHHHHHHHHCCCCEEEcCCcCCHHHHHHHHHcCCCEEEECch---
Confidence 467889999999999999886431110 011123333333333321 233344567889999999999998754221
Q ss_pred HHHHhhhcCCHHHHHHHHHHHHHHHHhCCCcEEEEEee-----eecCCCCCCCCHHHHHHHHHHHHHCCcCEEEEcCCC-
Q 018252 227 AFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSC-----VVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTI- 300 (359)
Q Consensus 227 ~~~~~n~~~t~~e~l~~i~~~i~~Ak~~G~~V~~~is~-----~fg~~~~~r~~~e~l~~~a~~l~~~Gad~I~L~DT~- 300 (359)
.+. ..+.++++++...+. +.+ .+.. ...... ..+...+.++++.+.+.|++.|.+-|..
T Consensus 106 ~l~----------~~~~l~ei~~~~~~~-i~v--sid~k~~~v~~~g~~--~~~~~~~~e~~~~~~~~g~~~ii~~~~~~ 170 (233)
T PRK00748 106 AVK----------NPELVKEACKKFPGK-IVV--GLDARDGKVATDGWL--ETSGVTAEDLAKRFEDAGVKAIIYTDISR 170 (233)
T ss_pred HHh----------CHHHHHHHHHHhCCC-cee--eeeccCCEEEEccCe--ecCCCCHHHHHHHHHhcCCCEEEEeeecC
Confidence 111 112233333332221 211 2110 000000 0112345678899999999976666543
Q ss_pred -CCCcHHHHHHHHHHHHHhCCCceEEEEeCCCCCcHHHHHHHHHHcC-CCEE
Q 018252 301 -GVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQVS-PMHA 350 (359)
Q Consensus 301 -G~~~P~~v~~lv~~l~~~~p~~~L~~H~HNd~GLAlANalaAv~AG-a~~I 350 (359)
|...-. -.++++.+++..+ +|+-..+.-. ...-...+.+.| |+-|
T Consensus 171 ~g~~~G~-d~~~i~~l~~~~~-ipvia~GGi~---~~~di~~~~~~g~~~gv 217 (233)
T PRK00748 171 DGTLSGP-NVEATRELAAAVP-IPVIASGGVS---SLDDIKALKGLGAVEGV 217 (233)
T ss_pred cCCcCCC-CHHHHHHHHHhCC-CCEEEeCCCC---CHHHHHHHHHcCCccEE
Confidence 333321 1466667777665 4565543221 233445566666 6654
No 486
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=85.09 E-value=8.4 Score=37.78 Aligned_cols=79 Identities=19% Similarity=0.238 Sum_probs=52.9
Q ss_pred CCHHHHHHHHHHHHHCCcCEEEE--c-------CCC-CCC---cHHHHHHHHHHHHHhCCCceEEEEeC---CCCC-cHH
Q 018252 274 IPPSKVAYVAKELHDMGCFEISL--G-------DTI-GVG---TPGTVVPMLEAVMAVVPVEKLAVHLH---DTYG-QSL 336 (359)
Q Consensus 274 ~~~e~l~~~a~~l~~~Gad~I~L--~-------DT~-G~~---~P~~v~~lv~~l~~~~p~~~L~~H~H---Nd~G-LAl 336 (359)
.+++.+.+.++.+.++|+|.|.| + |.. |.. .|..+.++++++++.++ ++|.+-.. ++.+ ...
T Consensus 72 ~~~~~~~~aa~~~~~~G~d~IelN~gcP~~~~~~~~~Gs~l~~~~~~~~ei~~~vr~~~~-~pv~vKir~g~~~~~~~~~ 150 (319)
T TIGR00737 72 SDPDTMAEAAKINEELGADIIDINMGCPVPKITKKGAGSALLRDPDLIGKIVKAVVDAVD-IPVTVKIRIGWDDAHINAV 150 (319)
T ss_pred CCHHHHHHHHHHHHhCCCCEEEEECCCCHHHhcCCCccchHhCCHHHHHHHHHHHHhhcC-CCEEEEEEcccCCCcchHH
Confidence 48889999999999999987655 2 222 322 58889999999998765 46666542 1222 233
Q ss_pred HHHHHHHHcCCCEEece
Q 018252 337 PNILISLQVSPMHAKPC 353 (359)
Q Consensus 337 ANalaAv~AGa~~ID~t 353 (359)
.-+..+.++|++.|.++
T Consensus 151 ~~a~~l~~~G~d~i~vh 167 (319)
T TIGR00737 151 EAARIAEDAGAQAVTLH 167 (319)
T ss_pred HHHHHHHHhCCCEEEEE
Confidence 44555677899988653
No 487
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=85.07 E-value=43 Score=33.77 Aligned_cols=132 Identities=16% Similarity=0.084 Sum_probs=78.5
Q ss_pred CCHHHHHHHHHHHHh--CCCCEEEEeccCCCCCcCCCCCHHHHHHHhhh----cCCCeEEEE-eCChHhHHHHHHcCCCE
Q 018252 145 VPTGVKVELIRRLVS--SGLPVVEATSFVSPKWVPQLADARDVMEAVRD----LEGARLPVL-TPNLKGFEAAIAAGAKE 217 (359)
Q Consensus 145 ~~~~~k~~ia~~L~~--aGv~~IEvG~fvspk~vPq~~D~~ev~~~l~~----~~~~~l~~l-~~n~~gie~a~~aGv~~ 217 (359)
...+++.++. .|.+ +|++.|-+=.- + ...+.+++.++. .|+..+.+= +-+.++.+..+++|+|.
T Consensus 105 ~~~~d~er~~-~L~~~~~g~D~iviD~A-h-------Ghs~~~i~~ik~ik~~~P~~~vIaGNV~T~e~a~~Li~aGAD~ 175 (346)
T PRK05096 105 TSDADFEKTK-QILALSPALNFICIDVA-N-------GYSEHFVQFVAKAREAWPDKTICAGNVVTGEMVEELILSGADI 175 (346)
T ss_pred CCHHHHHHHH-HHHhcCCCCCEEEEECC-C-------CcHHHHHHHHHHHHHhCCCCcEEEecccCHHHHHHHHHcCCCE
Confidence 4555555555 5555 69999866431 1 223344444442 466554322 23457888899999998
Q ss_pred EEEec-CCchHHHHhhhcCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHHCCcCEEEE
Q 018252 218 VAIFA-SASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISL 296 (359)
Q Consensus 218 V~i~~-s~S~~~~~~n~~~t~~e~l~~i~~~i~~Ak~~G~~V~~~is~~fg~~~~~r~~~e~l~~~a~~l~~~Gad~I~L 296 (359)
|.+-+ |-|---.+.+.|.-+. .+..+.++.+.|++.|.++.+ |++-..+- +++|++. +||+.+.|
T Consensus 176 vKVGIGpGSiCtTr~vtGvG~P-QltAV~~~a~~a~~~gvpiIA---------DGGi~~sG---DI~KAla-aGAd~VMl 241 (346)
T PRK05096 176 VKVGIGPGSVCTTRVKTGVGYP-QLSAVIECADAAHGLGGQIVS---------DGGCTVPG---DVAKAFG-GGADFVML 241 (346)
T ss_pred EEEcccCCccccCccccccChh-HHHHHHHHHHHHHHcCCCEEe---------cCCccccc---HHHHHHH-cCCCEEEe
Confidence 88743 2221111233444444 578888999999999998732 44543333 4666554 89998887
Q ss_pred cCC
Q 018252 297 GDT 299 (359)
Q Consensus 297 ~DT 299 (359)
.-.
T Consensus 242 Gsl 244 (346)
T PRK05096 242 GGM 244 (346)
T ss_pred Chh
Confidence 653
No 488
>PRK11613 folP dihydropteroate synthase; Provisional
Probab=85.06 E-value=8.7 Score=37.54 Aligned_cols=76 Identities=17% Similarity=0.098 Sum_probs=52.7
Q ss_pred CCCCC-CHHHHHHHHHHHHHCCcCEEEEc------CCCCCCcHHHHHH---HHHHHHHhCCCceEEEEeCCCCCcHHHHH
Q 018252 270 VEGAI-PPSKVAYVAKELHDMGCFEISLG------DTIGVGTPGTVVP---MLEAVMAVVPVEKLAVHLHDTYGQSLPNI 339 (359)
Q Consensus 270 ~~~r~-~~e~l~~~a~~l~~~Gad~I~L~------DT~G~~~P~~v~~---lv~~l~~~~p~~~L~~H~HNd~GLAlANa 339 (359)
|+|++ +++...+-++++.+.||+.|-+. +.-.+...+++.+ .++.+++.+ +++|++ ||+--. -+
T Consensus 30 dgg~~~~~~~a~~~a~~~~~~GAdIIDIGgeSTrPg~~~v~~eeE~~Rv~pvI~~l~~~~-~~~ISI---DT~~~~--va 103 (282)
T PRK11613 30 DGGTHNSLIDAVKHANLMINAGATIIDVGGESTRPGAAEVSVEEELDRVIPVVEAIAQRF-EVWISV---DTSKPE--VI 103 (282)
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCcEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcC-CCeEEE---ECCCHH--HH
Confidence 56664 89999999999999999999987 2222333345444 556666555 357766 444444 45
Q ss_pred HHHHHcCCCEEe
Q 018252 340 LISLQVSPMHAK 351 (359)
Q Consensus 340 laAv~AGa~~ID 351 (359)
.+|+++||++|+
T Consensus 104 ~~AL~~GadiIN 115 (282)
T PRK11613 104 RESAKAGAHIIN 115 (282)
T ss_pred HHHHHcCCCEEE
Confidence 688999999994
No 489
>PRK00115 hemE uroporphyrinogen decarboxylase; Validated
Probab=84.96 E-value=3 Score=41.39 Aligned_cols=69 Identities=9% Similarity=0.038 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHCCcCEEEEcC-CCCCCcHHHHHHHH--------HHHHHhCCCceEEEEeCCCCCcHHHHHHHH-HHcC
Q 018252 277 SKVAYVAKELHDMGCFEISLGD-TIGVGTPGTVVPML--------EAVMAVVPVEKLAVHLHDTYGQSLPNILIS-LQVS 346 (359)
Q Consensus 277 e~l~~~a~~l~~~Gad~I~L~D-T~G~~~P~~v~~lv--------~~l~~~~p~~~L~~H~HNd~GLAlANalaA-v~AG 346 (359)
+.+.++++...++|++.|.++| +.+.+.|..+.+++ ..+++..|+.++-.||.|+. +.+.. .+.|
T Consensus 186 ~~~~~~~~~~~eaGad~i~i~d~~~~~lsp~~f~ef~~P~~k~i~~~i~~~~~~~~ilh~cg~~~-----~~~~~~~~~~ 260 (346)
T PRK00115 186 DATIAYLNAQIEAGAQAVQIFDSWAGALSPADYREFVLPYMKRIVAELKREHPDVPVILFGKGAG-----ELLEAMAETG 260 (346)
T ss_pred HHHHHHHHHHHHcCCCEEEEecCccccCCHHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEcCCcH-----HHHHHHHhcC
Confidence 3456677777789999999999 56778888887664 23333223444554555432 22333 3458
Q ss_pred CCEE
Q 018252 347 PMHA 350 (359)
Q Consensus 347 a~~I 350 (359)
++.+
T Consensus 261 ~~~i 264 (346)
T PRK00115 261 ADVV 264 (346)
T ss_pred CCEE
Confidence 8876
No 490
>TIGR01464 hemE uroporphyrinogen decarboxylase. This model represents uroporphyrinogen decarboxylase (HemE), which converts uroporphyrinogen III to coproporphyrinogen III. This step takes the pathway toward protoporphyrin IX, a common precursor of both heme and chlorophyll, rather than toward precorrin 2 and its products.
Probab=84.94 E-value=3.2 Score=40.84 Aligned_cols=68 Identities=16% Similarity=0.133 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHCCcCEEEEcC-CCCCCcHHHHHHHHH--------HHHHhCCCceEEEEeCCCCCcHHHHHHHHHH-cCC
Q 018252 278 KVAYVAKELHDMGCFEISLGD-TIGVGTPGTVVPMLE--------AVMAVVPVEKLAVHLHDTYGQSLPNILISLQ-VSP 347 (359)
Q Consensus 278 ~l~~~a~~l~~~Gad~I~L~D-T~G~~~P~~v~~lv~--------~l~~~~p~~~L~~H~HNd~GLAlANalaAv~-AGa 347 (359)
.+.++++...++|++.|.+.| +.+.+.|.++.+++. .+++..+..++ +|+|.+.. +.+..+. .|+
T Consensus 181 ~~~~~~~~~~eaGad~i~i~d~~~~~lsp~~f~ef~~p~~k~i~~~i~~~~~~~~i-lh~cg~~~----~~~~~~~~~~~ 255 (338)
T TIGR01464 181 ATIEYLVEQVKAGAQAVQIFDSWAGALSPEDFEEFVLPYLKKIIEEVKARLPNVPV-ILFAKGAG----HLLEELAETGA 255 (338)
T ss_pred HHHHHHHHHHHcCCCEEEEECCccccCCHHHHHHHHHHHHHHHHHHHHHhCCCCCE-EEEeCCcH----HHHHHHHhcCC
Confidence 456677777789999999999 678889999886653 33333234444 44443322 3444443 588
Q ss_pred CEE
Q 018252 348 MHA 350 (359)
Q Consensus 348 ~~I 350 (359)
+.+
T Consensus 256 ~~~ 258 (338)
T TIGR01464 256 DVV 258 (338)
T ss_pred CEE
Confidence 877
No 491
>smart00518 AP2Ec AP endonuclease family 2. These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites
Probab=84.89 E-value=11 Score=35.43 Aligned_cols=22 Identities=23% Similarity=0.264 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHhCCCcE
Q 018252 237 IEDSLVRYRAVAHAAKVLSIPV 258 (359)
Q Consensus 237 ~~e~l~~i~~~i~~Ak~~G~~V 258 (359)
++.+++.++++++.|+++|.+.
T Consensus 79 r~~~~~~l~~~i~~A~~lGa~~ 100 (273)
T smart00518 79 VEKSIERLIDEIKRCEELGIKA 100 (273)
T ss_pred HHHHHHHHHHHHHHHHHcCCCE
Confidence 4455666777777777777764
No 492
>PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed
Probab=84.88 E-value=14 Score=36.24 Aligned_cols=94 Identities=7% Similarity=0.092 Sum_probs=66.3
Q ss_pred HHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHHCCcCE-EEEcCCC-CCCcHHHHHHHHHHHHHhCCC
Q 018252 244 YRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFE-ISLGDTI-GVGTPGTVVPMLEAVMAVVPV 321 (359)
Q Consensus 244 i~~~i~~Ak~~G~~V~~~is~~fg~~~~~r~~~e~l~~~a~~l~~~Gad~-I~L~DT~-G~~~P~~v~~lv~~l~~~~p~ 321 (359)
++++++.|++.|+-|- +|. -.+.+.+..+++.+.+.+... |.+.-.. -.+....+..++..+.++..
T Consensus 6 ~k~ll~~A~~~~yaV~-----AfN-----~~n~e~~~avi~AAe~~~sPvIl~~~~~~~~~~g~~~~~~~~~~~A~~~~- 74 (283)
T PRK07998 6 GRILLDRIQEKHVLAG-----AFN-----TTNLETTISILNAIERSGLPNFIQIAPTNAQLSGYDYIYEIVKRHADKMD- 74 (283)
T ss_pred HHHHHHHHHHCCCEEE-----EEe-----eCCHHHHHHHHHHHHHhCCCEEEECcHhHHhhCCHHHHHHHHHHHHHHCC-
Confidence 5678889999998763 343 247788889999999888653 4443221 22334556777777777764
Q ss_pred ceEEEEeCCCCCcHHHHHHHHHHcCCCEE
Q 018252 322 EKLAVHLHDTYGQSLPNILISLQVSPMHA 350 (359)
Q Consensus 322 ~~L~~H~HNd~GLAlANalaAv~AGa~~I 350 (359)
+|+.+|. |-|.-+..+..|+++|++-|
T Consensus 75 vPV~lHL--DH~~~~e~i~~Ai~~GftSV 101 (283)
T PRK07998 75 VPVSLHL--DHGKTFEDVKQAVRAGFTSV 101 (283)
T ss_pred CCEEEEC--cCCCCHHHHHHHHHcCCCEE
Confidence 5777665 67778899999999998743
No 493
>PF09587 PGA_cap: Bacterial capsule synthesis protein PGA_cap; InterPro: IPR019079 CapA is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria. Poly-gamma-glutamate is a natural polymer that may be involved in virulence and may help bacteria survive in high salt concentrations. It is a surface-associated protein [].
Probab=84.70 E-value=8.4 Score=36.29 Aligned_cols=158 Identities=17% Similarity=0.144 Sum_probs=77.8
Q ss_pred EeCCCcccCCCCCCCCCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcCCCCCHHHHHHHhhhc--CCCeEEEEeCChHhH
Q 018252 130 VEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDL--EGARLPVLTPNLKGF 207 (359)
Q Consensus 130 ~D~TLRDG~Q~~~~~~~~~~k~~ia~~L~~aGv~~IEvG~fvspk~vPq~~D~~ev~~~l~~~--~~~~l~~l~~n~~gi 207 (359)
+|+.+=+..+.....+.....-++++.|..+|++.+-++- ....- ...+-+.+.++.+ .++...+.-++..+.
T Consensus 44 lE~~v~~~~~~~~~~~~f~~~~~~~~~L~~~G~d~vslAN---NH~~D--~G~~gl~~Tl~~L~~~gi~~~Gag~~~~~a 118 (250)
T PF09587_consen 44 LETPVTDSGQPASGYPHFNAPPEILDALKDAGFDVVSLAN---NHIFD--YGEEGLLDTLEALDKAGIPYVGAGRNLEEA 118 (250)
T ss_pred eeecCcCCCCcCCCcceecCCHHHHHHHHHcCCCEEEecC---CCCcc--ccHHHHHHHHHHHHHCCCcEeECcCChHHh
Confidence 3555533333222213344445669999999999987763 11000 0123344444432 445555544554333
Q ss_pred HHH--HHcCCCEEEEec---CCchHHHHhh------------hc-CCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCC
Q 018252 208 EAA--IAAGAKEVAIFA---SASEAFSKSN------------IN-CSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCP 269 (359)
Q Consensus 208 e~a--~~aGv~~V~i~~---s~S~~~~~~n------------~~-~t~~e~l~~i~~~i~~Ak~~G~~V~~~is~~fg~~ 269 (359)
.+. ++.+-.+|.+.. ..+....... .+ ......++.+.+.++.+|+ +..+.+- ++=||.+
T Consensus 119 ~~p~i~~~~g~kia~l~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~r~-~~D~vIv-~~HwG~e 196 (250)
T PF09587_consen 119 RRPAIIEVNGVKIAFLGYTDGENGYSSANGNRPYGFSYRPDKAGLNPNRPGIERIKEDIREARK-KADVVIV-SLHWGIE 196 (250)
T ss_pred cCeEEEEECCEEEEEEEEEcCCCCCccccccccccccccccccccccccchHHHHHHHHHHHhc-CCCEEEE-EeccCCC
Confidence 221 112212233321 1111100000 00 0011224677788888884 4444332 3347876
Q ss_pred CCCCCCHHHHHHHHHHHHHCCcCEEE
Q 018252 270 VEGAIPPSKVAYVAKELHDMGCFEIS 295 (359)
Q Consensus 270 ~~~r~~~e~l~~~a~~l~~~Gad~I~ 295 (359)
+. ..+.++..++++.+.++|||.|.
T Consensus 197 ~~-~~p~~~q~~~a~~lidaGaDiIi 221 (250)
T PF09587_consen 197 YE-NYPTPEQRELARALIDAGADIII 221 (250)
T ss_pred CC-CCCCHHHHHHHHHHHHcCCCEEE
Confidence 64 44566788999999999998764
No 494
>PTZ00124 adenosine deaminase; Provisional
Probab=84.66 E-value=48 Score=33.50 Aligned_cols=136 Identities=12% Similarity=-0.050 Sum_probs=79.5
Q ss_pred HHHHHcCCCEEEEecCCchHHHHhhhcCCHHHHHHHHHHHHHHHHh---CCCcEEEEEeeeecCCCCCC-CCHHHHHHHH
Q 018252 208 EAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKV---LSIPVRGYVSCVVGCPVEGA-IPPSKVAYVA 283 (359)
Q Consensus 208 e~a~~aGv~~V~i~~s~S~~~~~~n~~~t~~e~l~~i~~~i~~Ak~---~G~~V~~~is~~fg~~~~~r-~~~e~l~~~a 283 (359)
+.+.+-|+..+-+.. ++.+....-|.+.++.++.+.+.++.|++ .|+.++.-++ . .| .+++...+.+
T Consensus 113 ~d~~~dgV~Y~Eir~--~P~~~~~~~gl~~~~vv~av~~g~~~a~~~~~~gI~~~lI~~--~-----~R~~~~e~a~e~~ 183 (362)
T PTZ00124 113 FNKYKEGVVLMEFRY--SPTFVAFKHNLDIDLIHQAIVKGIKEAVELLDHKIEVGLLCI--G-----DTGHDAAPIKESA 183 (362)
T ss_pred HHHHHcCCEEEEEEc--CchhhhcCCCCCHHHHHHHHHHHHHHHHhccCCCceEeEEEE--e-----cCCCCHHHHHHHH
Confidence 445556877666554 34332234578899999999999999875 5776654443 1 13 4667666777
Q ss_pred HHHHHCCcCEEEEcCCCCCCc-HHHHHHHHHHHHHhCCCceEEEEeCCCCCcH-HHHHHHHH-HcCCCEEeceee
Q 018252 284 KELHDMGCFEISLGDTIGVGT-PGTVVPMLEAVMAVVPVEKLAVHLHDTYGQS-LPNILISL-QVSPMHAKPCFT 355 (359)
Q Consensus 284 ~~l~~~Gad~I~L~DT~G~~~-P~~v~~lv~~l~~~~p~~~L~~H~HNd~GLA-lANalaAv-~AGa~~ID~tl~ 355 (359)
+.+.+.--. |.=-|-.|-=. +..+.+.++..++. ++++.+|+=-..|.. ..+...|+ ..|+++|.=.+.
T Consensus 184 ~~a~~~~~~-vvGiDLaG~E~~~~~f~~~f~~Ar~~--Gl~~t~HaGE~~~~~~~~~v~~ai~~l~~~RIGHG~~ 255 (362)
T PTZ00124 184 DFCLKHKAD-FVGFDHAGHEVDLKPFKDIFDYVREA--GVNLTVHAGEDVTLPNLNTLYSAIQVLKVKRIGHGIR 255 (362)
T ss_pred HHHHhccCC-eEEEeccCCCCCcHHHHHHHHHHHHC--CCCEEEEeCCCCCCCcchhHHHHHHHhCCCccccccc
Confidence 766654322 22123333221 23355666655553 578999986543332 22334444 589999976554
No 495
>PRK02506 dihydroorotate dehydrogenase 1A; Reviewed
Probab=84.60 E-value=26 Score=34.36 Aligned_cols=58 Identities=19% Similarity=0.255 Sum_probs=41.1
Q ss_pred CCHHHHHHHHHHHHHCC-cCEEEE--c--CCCCCC----cHHHHHHHHHHHHHhCCCceEEEEeCCCC
Q 018252 274 IPPSKVAYVAKELHDMG-CFEISL--G--DTIGVG----TPGTVVPMLEAVMAVVPVEKLAVHLHDTY 332 (359)
Q Consensus 274 ~~~e~l~~~a~~l~~~G-ad~I~L--~--DT~G~~----~P~~v~~lv~~l~~~~p~~~L~~H~HNd~ 332 (359)
.+++++.++++.+.++| +|.|.| . .+.|.. .|+.+.++++++++... +|+.+-.--+.
T Consensus 102 ~~~~~~~~~a~~~~~~g~ad~iElN~ScPn~~~~~~~g~d~~~~~~i~~~v~~~~~-~Pv~vKlsp~~ 168 (310)
T PRK02506 102 LSPEETHTILKKIQASDFNGLVELNLSCPNVPGKPQIAYDFETTEQILEEVFTYFT-KPLGVKLPPYF 168 (310)
T ss_pred CcHHHHHHHHHHHhhcCCCCEEEEECCCCCCCCccccccCHHHHHHHHHHHHHhcC-CccEEecCCCC
Confidence 46788889999998888 885443 2 333321 58999999999999764 46666555554
No 496
>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=84.57 E-value=28 Score=34.80 Aligned_cols=116 Identities=12% Similarity=0.058 Sum_probs=67.6
Q ss_pred HHHHHHHHHHHHHHHhCCCcEEEEEeeeecC--------------CC-------C----CCCCHH-------HHHHHHHH
Q 018252 238 EDSLVRYRAVAHAAKVLSIPVRGYVSCVVGC--------------PV-------E----GAIPPS-------KVAYVAKE 285 (359)
Q Consensus 238 ~e~l~~i~~~i~~Ak~~G~~V~~~is~~fg~--------------~~-------~----~r~~~e-------~l~~~a~~ 285 (359)
++.++.++++++.++++|-++.+.|.+. |- |- . ...+.+ .+.+.|++
T Consensus 74 d~~i~~~~~l~~~vh~~G~~i~~QL~h~-G~~~~~~~~~~~~~~~ps~~~~~~~~~~~p~~mt~~eI~~ii~~f~~aA~~ 152 (353)
T cd04735 74 DSDIPGLRKLAQAIKSKGAKAILQIFHA-GRMANPALVPGGDVVSPSAIAAFRPGAHTPRELTHEEIEDIIDAFGEATRR 152 (353)
T ss_pred hhhhHHHHHHHHHHHhCCCeEEEEecCC-CCCCCccccCCCceecCCCCcccCCCCCCCccCCHHHHHHHHHHHHHHHHH
Confidence 4556777778888888887766655431 00 00 0 012222 34455567
Q ss_pred HHHCCcCEEEE-------------------cCCCCCCc---HHHHHHHHHHHHHhCC-----CceEEEEeCC----CCCc
Q 018252 286 LHDMGCFEISL-------------------GDTIGVGT---PGTVVPMLEAVMAVVP-----VEKLAVHLHD----TYGQ 334 (359)
Q Consensus 286 l~~~Gad~I~L-------------------~DT~G~~~---P~~v~~lv~~l~~~~p-----~~~L~~H~HN----d~GL 334 (359)
+.++|.|.|.| .|-.|-.. +.-+.++++++|++++ +.+|++..-- .-|+
T Consensus 153 a~~aGfDgVeih~ahGyLl~qFlsp~~N~R~D~yGGslenR~r~~~eii~~vr~~vg~~~~~~~~v~~R~s~~~~~~~g~ 232 (353)
T cd04735 153 AIEAGFDGVEIHGANGYLIQQFFSPHSNRRTDEWGGSLENRMRFPLAVVKAVQEVIDKHADKDFILGYRFSPEEPEEPGI 232 (353)
T ss_pred HHHcCCCEEEEccccchHHHHhcCCccCCCCcccCCcHHHHHHHHHHHHHHHHHHhccccCCCceEEEEECcccccCCCC
Confidence 77889997766 34444332 3446678888888874 5567765432 2244
Q ss_pred HHHHH----HHHHHcCCCEEecee
Q 018252 335 SLPNI----LISLQVSPMHAKPCF 354 (359)
Q Consensus 335 AlANa----laAv~AGa~~ID~tl 354 (359)
....+ -..-++|+++|+++.
T Consensus 233 ~~ee~~~i~~~L~~~GvD~I~Vs~ 256 (353)
T cd04735 233 RMEDTLALVDKLADKGLDYLHISL 256 (353)
T ss_pred CHHHHHHHHHHHHHcCCCEEEecc
Confidence 44333 344577999999874
No 497
>PF00224 PK: Pyruvate kinase, barrel domain; InterPro: IPR015793 Pyruvate kinase (2.7.1.40 from EC) (PK) catalyses the final step in glycolysis [], the conversion of phosphoenolpyruvate to pyruvate with concomitant phosphorylation of ADP to ATP: ADP + phosphoenolpyruvate = ATP + pyruvate The enzyme, which is found in all living organisms, requires both magnesium and potassium ions for its activity. In vertebrates, there are four tissue-specific isozymes: L (liver), R (red cells), M1 (muscle, heart and brain), and M2 (early foetal tissue). In plants, PK exists as cytoplasmic and plastid isozymes, while most bacteria and lower eukaryotes have one form, except in certain bacteria, such as Escherichia coli, that have two isozymes. All isozymes appear to be tetramers of identical subunits of ~500 residues. PK helps control the rate of glycolysis, along with phosphofructokinase (IPR000023 from INTERPRO) and hexokinase (IPR001312 from INTERPRO). PK possesses allosteric sites for numerous effectors, yet the isozymes respond differently, in keeping with their different tissue distributions []. The activity of L-type (liver) PK is increased by fructose-1,6-bisphosphate (F1,6BP) and lowered by ATP and alanine (gluconeogenic precursor), therefore when glucose levels are high, glycolysis is promoted, and when levels are low, gluconeogenesis is promoted. L-type PK is also hormonally regulated, being activated by insulin and inhibited by glucagon, which covalently modifies the PK enzyme. M1-type (muscle, brain) PK is inhibited by ATP, but F1,6BP and alanine have no effect, which correlates with the function of muscle and brain, as opposed to the liver. The structure of several pyruvate kinases from various organisms have been determined [, ]. The protein comprises three-four domains: a small N-terminal helical domain (absent in bacterial PK), a beta/alpha-barrel domain, a beta-barrel domain (inserted within the beta/alpha-barrel domain), and a 3-layer alpha/beta/alpha sandwich domain. This entry represents the two barrel domains, the beta/alpha-barrel, and the beta-barrel inserted within it.; GO: 0000287 magnesium ion binding, 0004743 pyruvate kinase activity, 0030955 potassium ion binding, 0006096 glycolysis; PDB: 3HQQ_W 3KTX_A 3E0V_A 3QV6_D 3QV7_D 1PKL_D 3HQP_A 3QV8_D 3HQO_C 3IS4_B ....
Probab=84.39 E-value=21 Score=35.75 Aligned_cols=158 Identities=14% Similarity=0.168 Sum_probs=93.0
Q ss_pred CCHHHHHHHHHHHHhCCCCEEEEeccCCCCCcCCCCCHHHHHHHhhh-cCCCeEEEEeCChHhHHH---HHHcCCCEEEE
Q 018252 145 VPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRD-LEGARLPVLTPNLKGFEA---AIAAGAKEVAI 220 (359)
Q Consensus 145 ~~~~~k~~ia~~L~~aGv~~IEvG~fvspk~vPq~~D~~ev~~~l~~-~~~~~l~~l~~n~~gie~---a~~aGv~~V~i 220 (359)
++..++ +.++...+.|++.|=+.| +.. ..|-.++.+.+.+ .+++.+.+=+.+..++++ .+++ .|.|.+
T Consensus 174 LtekD~-~di~fa~~~~vD~IalSF-Vrs-----a~dV~~lr~~l~~~~~~~~iiaKIE~~~~v~nl~eI~~~-sDgimi 245 (348)
T PF00224_consen 174 LTEKDK-EDIKFAVENGVDFIALSF-VRS-----AEDVKELRKILGEKGKDIKIIAKIETKEAVENLDEILEA-SDGIMI 245 (348)
T ss_dssp S-HHHH-HHHHHHHHTT-SEEEETT-E-S-----HHHHHHHHHHHTCTTTTSEEEEEE-SHHHHHTHHHHHHH-SSEEEE
T ss_pred CCHHHH-HHHHHHHHcCCCEEEecC-CCc-----hHHHHHHHHHhhhcCcccceeeccccHHHHhhHHHHhhh-cCeEEE
Confidence 444454 445778888999997765 321 2466667777764 356777776666665543 3332 355655
Q ss_pred ecCCchHHHHhhhcCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCC-CCCCCHHHHHHHHHHHHHCCcCEEEEc-C
Q 018252 221 FASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPV-EGAIPPSKVAYVAKELHDMGCFEISLG-D 298 (359)
Q Consensus 221 ~~s~S~~~~~~n~~~t~~e~l~~i~~~i~~Ak~~G~~V~~~is~~fg~~~-~~r~~~e~l~~~a~~l~~~Gad~I~L~-D 298 (359)
- --+. -+-...++....-+.+++.|+.+|.+|...= ..+-.-. ..+-+..++.+++.++.+ |+|.|.|. -
T Consensus 246 a--RGDL----g~e~~~e~v~~~Qk~ii~~~~~~~kpvi~AT-q~Lesm~~~~~PTRaEv~Dv~nav~d-g~d~vmLs~E 317 (348)
T PF00224_consen 246 A--RGDL----GVEIPFEKVPIIQKRIIKKCNAAGKPVIVAT-QMLESMIKNPIPTRAEVSDVANAVLD-GADAVMLSGE 317 (348)
T ss_dssp E--HHHH----HHHSTGGGHHHHHHHHHHHHHHHT-EEEEES-SSSGGGGTSSS--HHHHHHHHHHHHH-T-SEEEESHH
T ss_pred e--cCCc----ceeeeHHHHHHHHHHHHHHHHHhCCCeeehh-HhHHHHHhCCCCchHHHhhHHHHHHc-CCCEEEecCC
Confidence 2 1111 1112334444445788999999999873211 1111111 123467789999998887 99999998 6
Q ss_pred CCCCCcHHHHHHHHHHHHHh
Q 018252 299 TIGVGTPGTVVPMLEAVMAV 318 (359)
Q Consensus 299 T~G~~~P~~v~~lv~~l~~~ 318 (359)
|+=.-.|.++.+.+..+.+.
T Consensus 318 Ta~G~~p~~~v~~~~~i~~~ 337 (348)
T PF00224_consen 318 TAIGKYPVEAVKTMARIIRE 337 (348)
T ss_dssp HHTSSSHHHHHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHH
Confidence 77777898888888877664
No 498
>TIGR03699 mena_SCO4550 menaquinone biosynthesis protein, SCO4550 family. members of this protein family are involved in menaquinone biosynthesis by an alternate pathway via futalosine.
Probab=84.37 E-value=4.6 Score=39.85 Aligned_cols=78 Identities=17% Similarity=0.125 Sum_probs=49.1
Q ss_pred CCCHHHHHHHHHHHHHCCcCEEEEcCCCC-CCcHHHHHHHHHHHHHhCCCceEEEEe---------CCCCCcHHHHHHH-
Q 018252 273 AIPPSKVAYVAKELHDMGCFEISLGDTIG-VGTPGTVVPMLEAVMAVVPVEKLAVHL---------HDTYGQSLPNILI- 341 (359)
Q Consensus 273 r~~~e~l~~~a~~l~~~Gad~I~L~DT~G-~~~P~~v~~lv~~l~~~~p~~~L~~H~---------HNd~GLAlANala- 341 (359)
..+++++.+.++.+.+.|+++|.|.+-.. ...++.+.++++.+++..|. +.+|+ -...|+...-.+.
T Consensus 71 ~ls~eei~~~~~~~~~~G~~~i~l~gG~~p~~~~~~~~~li~~Ik~~~~~--i~~~~~s~~ei~~~~~~~g~~~~e~l~~ 148 (340)
T TIGR03699 71 VLSVEEILQKIEELVAYGGTQILLQGGVNPDLGLDYYEDLFRAIKARFPH--IHIHSFSPVEIVYIAKKEGLSLREVLER 148 (340)
T ss_pred CCCHHHHHHHHHHHHHcCCcEEEEecCCCCCCCHHHHHHHHHHHHHHCCC--cCCCCCCHHHHHHHhccCCCCHHHHHHH
Confidence 36888899988888889999998853211 22344567788888887664 33332 1133554333333
Q ss_pred HHHcCCCEEec
Q 018252 342 SLQVSPMHAKP 352 (359)
Q Consensus 342 Av~AGa~~ID~ 352 (359)
--+||++.++.
T Consensus 149 Lk~aG~~~~~~ 159 (340)
T TIGR03699 149 LKEAGLDSIPG 159 (340)
T ss_pred HHHcCCCcCCC
Confidence 34578888764
No 499
>COG0042 tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=84.28 E-value=7 Score=38.80 Aligned_cols=78 Identities=19% Similarity=0.150 Sum_probs=52.9
Q ss_pred CCHHHHHHHHHHHHHCCcCEEEEc----------CCCCCC---cHHHHHHHHHHHHHhCCCceEEE---EeCCCCC-cHH
Q 018252 274 IPPSKVAYVAKELHDMGCFEISLG----------DTIGVG---TPGTVVPMLEAVMAVVPVEKLAV---HLHDTYG-QSL 336 (359)
Q Consensus 274 ~~~e~l~~~a~~l~~~Gad~I~L~----------DT~G~~---~P~~v~~lv~~l~~~~p~~~L~~---H~HNd~G-LAl 336 (359)
.+|+.+.+.++.+.+.|++.|.|- -..|.+ .|+.++++++++++.++++|+.+ .++++.- +..
T Consensus 76 sdp~~l~eaA~~~~~~g~~~IdlN~GCP~~~V~~~g~Ga~Ll~~p~lv~~iv~a~~~av~~iPVTVKiRlG~d~~~~~~~ 155 (323)
T COG0042 76 SDPELLAEAAKIAEELGADIIDLNCGCPSPKVVKGGAGAALLKNPELLAEIVKAMVEAVGDIPVTVKIRLGWDDDDILAL 155 (323)
T ss_pred CCHHHHHHHHHHHHhcCCCEEeeeCCCChHHhcCCCcchhhcCCHHHHHHHHHHHHHhhCCCCeEEEEecccCcccccHH
Confidence 377888888888888887766652 333433 48889999999998876445555 2333332 566
Q ss_pred HHHHHHHHcCCCEEe
Q 018252 337 PNILISLQVSPMHAK 351 (359)
Q Consensus 337 ANalaAv~AGa~~ID 351 (359)
-.+.++-++||+.+-
T Consensus 156 ~ia~~~~~~g~~~lt 170 (323)
T COG0042 156 EIARILEDAGADALT 170 (323)
T ss_pred HHHHHHHhcCCCEEE
Confidence 677788888888764
No 500
>cd01714 ETF_beta The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The beta subunit protein is distantly related to and forms a heterodimer with the alpha subunit.
Probab=84.17 E-value=23 Score=32.53 Aligned_cols=100 Identities=12% Similarity=-0.059 Sum_probs=59.0
Q ss_pred HHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHHCCcCEEEEcCCCCC--CcHHHHHHHHHHHHHh-C
Q 018252 243 RYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGV--GTPGTVVPMLEAVMAV-V 319 (359)
Q Consensus 243 ~i~~~i~~Ak~~G~~V~~~is~~fg~~~~~r~~~e~l~~~a~~l~~~Gad~I~L~DT~G~--~~P~~v~~lv~~l~~~-~ 319 (359)
.+..+...+++.|-.+.+ + .+|. + ...+.++.+..+|+++|++.|.-+. .+|+.+.+.+..+.+. -
T Consensus 40 ~l~ea~~la~~~g~~v~a-v--~~G~------~--~~~~~~~~l~~~G~d~V~~~~~~~~~~~~~e~~a~al~~~i~~~~ 108 (202)
T cd01714 40 AVEEALRLKEKYGGEVTV-V--SMGP------P--QAEEALREALAMGADRAILVSDRAFAGADTLATAKALAAAIKKIG 108 (202)
T ss_pred HHHHHHHhhhhcCCEEEE-E--EECC------H--HHHHHHHHHHHcCCCEEEEEecccccCCChHHHHHHHHHHHHHhC
Confidence 334555556666655532 2 1331 1 1234555667889999999887654 4589999888887554 3
Q ss_pred CCceEEEEeCCCC-CcHHHHHHHHHHcCCCEEecee
Q 018252 320 PVEKLAVHLHDTY-GQSLPNILISLQVSPMHAKPCF 354 (359)
Q Consensus 320 p~~~L~~H~HNd~-GLAlANalaAv~AGa~~ID~tl 354 (359)
|++.|--|.-.+. |..+|--++ .+.|+-.+--++
T Consensus 109 p~lVL~~~t~~~~~grdlaprlA-arLga~lvsdv~ 143 (202)
T cd01714 109 VDLILTGKQSIDGDTGQVGPLLA-ELLGWPQITYVS 143 (202)
T ss_pred CCEEEEcCCcccCCcCcHHHHHH-HHhCCCccceEE
Confidence 6555555555544 666665544 455555544443
Done!