RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 018252
(359 letters)
>d1rqba2 c.1.10.5 (A:4-306) Transcarboxylase 5S subunit, N-terminal
domain {Propionibacterium freudenreichii shermanii
[TaxId: 1752]}
Length = 303
Score = 100 bits (249), Expect = 9e-25
Identities = 35/231 (15%), Positives = 77/231 (33%), Gaps = 19/231 (8%)
Query: 124 PRFVKIVEVGPRDGLQNEKNT-VPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADA 182
PR V I E+ RD Q+ T + V + ++G VE + + +
Sbjct: 8 PREVGITELVLRDAHQSLMATRMAMEDMVGACADIDAAGYWSVECWGGATYDSCIRFLNE 67
Query: 183 RDVMEAVRDLEGARLPVLTPNLKGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLV 242
RL + + + + + ++ ++ S E+ +
Sbjct: 68 DPWE---------RLRTFRKLMPNSRLQMLLRGQNLLGYRHYNDEVVDRFVDKSAENGMD 118
Query: 243 RYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAI--------PPSKVAYVAKELHDMGCFEI 294
+R ++ G +G I +A +L DMG I
Sbjct: 119 VFRVFDAMNDPRNMAHAMAAVKKAGKHAQGTICYTISPVHTVEGYVKLAGQLLDMGADSI 178
Query: 295 SLGDTIGVGTPGTVVPMLEAVM-AVVPVEKLAVHLHDTYGQSLPNILISLQ 344
+L D + P +++A+ ++ +H H T G + +++ +++
Sbjct: 179 ALKDMAALLKPQPAYDIIKAIKDTYGQKTQINLHCHSTTGVTEVSLMKAIE 229
>d1sr9a2 c.1.10.5 (A:61-370) 2-isopropylmalate synthase LeuA,
catalytic domain {Mycobacterium tuberculosis [TaxId:
1773]}
Length = 310
Score = 94.3 bits (233), Expect = 2e-22
Identities = 30/229 (13%), Positives = 59/229 (25%), Gaps = 13/229 (5%)
Query: 113 RDITNKFLKGIPRFVKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATS-FV 171
R ++ + P + V RDG Q + + K + LV G +E
Sbjct: 1 RTWPDRVIDRAPLWC---AVDLRDGNQALIDPMSPARKRRMFDLLVRMGYKEIEVGFPSA 57
Query: 172 SPKWVPQLADARDVMEAVRDLEGARLPVLTPNLKGFEAAIAAGAKEVAIFASASEA---- 227
S + + + D+ L P L +GA + S +
Sbjct: 58 SQTDFDFVREIIEQGAIPDDVTIQVLTQCRPELIERTFQACSGAPRAIVHFYNSTSILQR 117
Query: 228 -----FSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYV 282
+++ + D + A G +E A
Sbjct: 118 RVVFRANRAEVQAIATDGARKCVEQAAKYPGTQWRFEYSPESYTGTELEYAKQVCDAVGE 177
Query: 283 AKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDT 331
+L T+ + TP +E + + + +
Sbjct: 178 VIAPTPERPIIFNLPATVEMTTPNVYADSIEWMSRNLANRESVILSLHP 226
>d1nvma2 c.1.10.5 (A:2-290) 4-hydroxy-2-oxovalerate aldolase DmpG,
catalytic domain {Pseudomonas sp. [TaxId: 306]}
Length = 289
Score = 58.9 bits (141), Expect = 1e-10
Identities = 33/216 (15%), Positives = 65/216 (30%), Gaps = 15/216 (6%)
Query: 127 VKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVSPK--WVPQLADARD 184
+ I +V RDG ++ + R L + + +E +
Sbjct: 8 LYISDVTLRDGSHAIRHQYTLDDVRAIARALDKAKVDSIEVAHGDGLQGSSFNYGFGRHT 67
Query: 185 VMEAVRDLEGARLPVLTPNLKGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRY 244
+E + + G L V +A +A ++ +
Sbjct: 68 DLEYIEAVAGEISHAQIATLLLPG------IGSVHDLKNAYQAGARVVRVATHCTEADVS 121
Query: 245 RAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGVGT 304
+ A+ L + G+ + IP K+A K + G I + D+ G +
Sbjct: 122 KQHIEYARNLGMDTVGF------LMMSHMIPAEKLAEQGKLMESYGATCIYMADSGGAMS 175
Query: 305 PGTVVPMLEAVMAVVPVEKL-AVHLHDTYGQSLPNI 339
+ + A AV+ E +H H + N
Sbjct: 176 MNDIRDRMRAFKAVLKPETQVGMHAHHNLSLGVANS 211
>d2piia_ d.58.5.1 (A:) PII (product of glnB) {Escherichia coli
[TaxId: 562]}
Length = 112
Score = 27.9 bits (62), Expect = 0.82
Identities = 12/64 (18%), Positives = 29/64 (45%), Gaps = 3/64 (4%)
Query: 270 VEGAIPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPML---EAVMAVVPVEKLAV 326
++ I P K+ V + L ++G +++ + G G + E ++ +P K+ +
Sbjct: 4 IDAIIKPFKLDDVREALAEVGITGMTVTEVKGFGRQKGHTELYRGAEYMVDFLPKVKIEI 63
Query: 327 HLHD 330
+ D
Sbjct: 64 VVPD 67
>d1gy8a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase
(UDP-galactose 4-epimerase) {Trypanosoma brucei [TaxId:
5691]}
Length = 383
Score = 28.6 bits (62), Expect = 1.3
Identities = 11/72 (15%), Positives = 22/72 (30%), Gaps = 6/72 (8%)
Query: 72 HTRDMSHGDSFSRRTVSLGRNHKMFGSAC-----DIYN-SNCNDKDIRDITNKFLKGIPR 125
RD H + + + G ++N +R++ K
Sbjct: 268 CVRDYVHVCDLASAHILALDYVEKLGPNDKSKYFSVFNLGTSRGYSVREVIEVARKTTGH 327
Query: 126 FVKIVEVGPRDG 137
+ + E G R+G
Sbjct: 328 PIPVRECGRREG 339
>d1qy7a_ d.58.5.1 (A:) PII (product of glnB) {Cyanobacteria
(Synechococcus sp.) pcc 7942 [TaxId: 1131]}
Length = 112
Score = 26.3 bits (58), Expect = 2.7
Identities = 13/64 (20%), Positives = 24/64 (37%), Gaps = 3/64 (4%)
Query: 270 VEGAIPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPML---EAVMAVVPVEKLAV 326
+E I P K+ V L + G +++ + G G E + + KL +
Sbjct: 4 IEAIIRPFKLDEVKIALVNAGIVGMTVSEVRGFGRQKGQTERYRGAEYTVEFLQKLKLEI 63
Query: 327 HLHD 330
+ D
Sbjct: 64 VVED 67
>d1jjcb1 a.6.1.1 (B:1-38,B:152-190) Domains B1 and B5 of PheRS-beta,
PheT {Thermus thermophilus [TaxId: 274]}
Length = 77
Score = 25.7 bits (56), Expect = 3.0
Identities = 11/55 (20%), Positives = 15/55 (27%), Gaps = 4/55 (7%)
Query: 152 ELIRRLVSSGLPVVEATSFVSPKW----VPQLADARDVMEAVRDLEGARLPVLTP 202
L RL G P DA ++ RDL ++ P
Sbjct: 20 VLEERLAGLGFETDRIERVEEVVLDLEVTPNRPDALGLLGLARDLHALGYALVEP 74
>d1ejxc2 c.1.9.2 (C:1130-1422,C:1476-1567) alpha-subunit of urease,
catalytic domain {Klebsiella aerogenes [TaxId: 28451]}
Length = 385
Score = 26.6 bits (59), Expect = 5.8
Identities = 9/24 (37%), Positives = 15/24 (62%)
Query: 286 LHDMGCFEISLGDTIGVGTPGTVV 309
LHD+G F ++ D+ +G G V+
Sbjct: 219 LHDLGAFSLTSSDSQAMGRVGEVI 242
>d1oy5a_ c.116.1.4 (A:) tRNA(m1G37)-methyltransferase TrmD {Aquifex
aeolicus [TaxId: 63363]}
Length = 232
Score = 26.0 bits (57), Expect = 5.9
Identities = 10/31 (32%), Positives = 16/31 (51%)
Query: 286 LHDMGCFEISLGDTIGVGTPGTVVPMLEAVM 316
+ + EISLGD I G + +++AV
Sbjct: 121 VKKIVDMEISLGDFILSGGEIVALAVIDAVS 151
>d1vfja_ d.58.5.1 (A:) PII (product of glnB) {Thermus thermophilus
[TaxId: 274]}
Length = 116
Score = 25.2 bits (55), Expect = 6.1
Identities = 8/34 (23%), Positives = 13/34 (38%)
Query: 270 VEGAIPPSKVAYVAKELHDMGCFEISLGDTIGVG 303
+ + P K+ V K L ++L G G
Sbjct: 4 IVAIVRPEKLNEVLKALFQAEVRGLTLSRVQGHG 37
>d3brda3 b.42.7.1 (A:381-541) DNA-binding protein LAG-1 (CSL)
{Caenorhabditis elegans [TaxId: 6239]}
Length = 161
Score = 25.5 bits (56), Expect = 6.6
Identities = 5/24 (20%), Positives = 10/24 (41%)
Query: 20 DRIQRFSSNACRPSGDGMGMGSCW 43
D+I + + A + G+ W
Sbjct: 133 DKIIQHQATAINEHRHQINDGAAW 156
>d2b3na1 d.38.1.4 (A:6-159) Hypothetical protein AF1124 {Archaeon
Archaeoglobus fulgidus [TaxId: 2234]}
Length = 154
Score = 25.4 bits (55), Expect = 6.9
Identities = 5/41 (12%), Positives = 13/41 (31%), Gaps = 1/41 (2%)
Query: 49 CSTSNSYDEDYDEYTREAFPWRRHTRDMSHGDSFS-RRTVS 88
S Y + + P+ + ++ G F + +
Sbjct: 4 MSLLEEMKGIYSKKGGKVKPFEKFEGELKEGYRFEYEKKLC 44
>d1kg2a_ a.96.1.2 (A:) Catalytic domain of MutY {Escherichia coli
[TaxId: 562]}
Length = 224
Score = 25.7 bits (55), Expect = 7.9
Identities = 6/14 (42%), Positives = 9/14 (64%)
Query: 59 YDEYTREAFPWRRH 72
YD+Y R+ PW+
Sbjct: 14 YDKYGRKTLPWQID 27
>d1e9yb2 c.1.9.2 (B:132-431,B:481-569) alpha-subunit of urease,
catalytic domain {Helicobacter pylori [TaxId: 210]}
Length = 389
Score = 25.8 bits (57), Expect = 8.2
Identities = 11/24 (45%), Positives = 15/24 (62%)
Query: 286 LHDMGCFEISLGDTIGVGTPGTVV 309
LHDMG F I+ D+ +G G V+
Sbjct: 219 LHDMGAFSITSSDSQAMGRVGEVI 242
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.134 0.401
Gapped
Lambda K H
0.267 0.0682 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,336,526
Number of extensions: 63135
Number of successful extensions: 206
Number of sequences better than 10.0: 1
Number of HSP's gapped: 205
Number of HSP's successfully gapped: 19
Length of query: 359
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 273
Effective length of database: 1,226,816
Effective search space: 334920768
Effective search space used: 334920768
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (24.3 bits)