Query 018253
Match_columns 359
No_of_seqs 195 out of 1232
Neff 7.0
Searched_HMMs 46136
Date Fri Mar 29 07:26:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018253.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018253hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0329 DapA Dihydrodipicolina 100.0 3.1E-67 6.8E-72 505.0 34.1 278 57-335 3-295 (299)
2 PLN02417 dihydrodipicolinate s 100.0 4.2E-67 9E-72 500.5 33.6 279 58-336 1-279 (280)
3 TIGR02313 HpaI-NOT-DapA 2,4-di 100.0 6.7E-66 1.5E-70 495.3 34.9 277 59-336 1-291 (294)
4 PRK04147 N-acetylneuraminate l 100.0 1.1E-64 2.5E-69 486.6 33.9 277 58-335 3-291 (293)
5 PF00701 DHDPS: Dihydrodipicol 100.0 4.6E-65 9.9E-70 488.2 30.6 277 58-335 1-289 (289)
6 TIGR00674 dapA dihydrodipicoli 100.0 3.8E-64 8.3E-69 481.2 33.2 273 61-334 1-285 (285)
7 TIGR00683 nanA N-acetylneurami 100.0 1.3E-63 2.7E-68 478.7 34.3 275 59-334 1-289 (290)
8 cd00954 NAL N-Acetylneuraminic 100.0 1.5E-63 3.2E-68 477.9 34.2 274 59-333 1-288 (288)
9 PRK03170 dihydrodipicolinate s 100.0 2.3E-63 4.9E-68 477.3 35.2 278 59-337 2-291 (292)
10 TIGR03249 KdgD 5-dehydro-4-deo 100.0 5.6E-62 1.2E-66 468.7 35.0 273 58-335 5-296 (296)
11 cd00950 DHDPS Dihydrodipicolin 100.0 9.2E-62 2E-66 464.2 32.9 272 59-331 1-284 (284)
12 cd00408 DHDPS-like Dihydrodipi 100.0 1.7E-61 3.8E-66 461.3 32.8 269 62-331 1-281 (281)
13 PRK03620 5-dehydro-4-deoxygluc 100.0 8.7E-61 1.9E-65 461.8 35.0 274 58-335 7-298 (303)
14 cd00952 CHBPH_aldolase Trans-o 100.0 1.5E-60 3.3E-65 461.1 33.6 273 59-334 2-306 (309)
15 cd00953 KDG_aldolase KDG (2-ke 100.0 1.4E-60 3E-65 455.3 31.8 269 60-333 2-279 (279)
16 cd00951 KDGDH 5-dehydro-4-deox 100.0 7.9E-60 1.7E-64 452.3 34.5 268 60-332 2-288 (289)
17 cd00945 Aldolase_Class_I Class 99.9 3.1E-24 6.8E-29 192.5 17.4 172 63-257 2-201 (201)
18 cd08205 RuBisCO_IV_RLP Ribulos 99.9 5.5E-22 1.2E-26 195.9 11.4 200 51-252 115-362 (367)
19 cd00377 ICL_PEPM Members of th 99.6 2.3E-15 5.1E-20 141.2 13.4 146 51-206 51-218 (243)
20 cd08210 RLP_RrRLP Ribulose bis 99.6 7.2E-15 1.6E-19 145.0 13.3 186 60-251 126-357 (364)
21 TIGR02320 PEP_mutase phosphoen 99.4 4E-12 8.7E-17 121.7 16.0 149 52-206 61-232 (285)
22 PF06187 DUF993: Protein of un 98.3 1.4E-05 3.1E-10 76.8 14.9 260 74-337 53-363 (382)
23 PF13714 PEP_mutase: Phosphoen 97.7 0.0014 2.9E-08 61.6 15.4 120 77-206 83-211 (238)
24 PRK11320 prpB 2-methylisocitra 97.7 0.0023 4.9E-08 61.8 16.7 137 62-206 73-226 (292)
25 TIGR02317 prpB methylisocitrat 97.5 0.0059 1.3E-07 58.8 16.2 132 67-206 73-221 (285)
26 TIGR02319 CPEP_Pphonmut carbox 97.3 0.013 2.8E-07 56.7 15.9 138 62-206 72-225 (294)
27 PRK15063 isocitrate lyase; Pro 97.2 0.0079 1.7E-07 60.6 13.9 126 78-207 160-332 (428)
28 PRK07565 dihydroorotate dehydr 97.1 0.016 3.4E-07 57.0 15.4 83 108-192 84-175 (334)
29 TIGR02321 Pphn_pyruv_hyd phosp 97.1 0.022 4.7E-07 55.1 15.8 141 62-208 70-228 (290)
30 cd06556 ICL_KPHMT Members of t 97.0 0.013 2.9E-07 55.0 12.6 111 77-206 87-216 (240)
31 PRK01130 N-acetylmannosamine-6 96.3 0.7 1.5E-05 42.4 19.0 183 60-267 5-212 (221)
32 COG1830 FbaB DhnA-type fructos 96.3 0.18 3.9E-06 47.8 15.0 165 77-257 41-237 (265)
33 PRK09250 fructose-bisphosphate 96.1 0.11 2.3E-06 51.3 12.8 127 77-220 89-241 (348)
34 TIGR00262 trpA tryptophan synt 96.1 1.3 2.9E-05 41.9 21.6 177 69-259 14-229 (256)
35 cd04740 DHOD_1B_like Dihydroor 96.0 1 2.2E-05 43.2 19.3 63 126-188 88-160 (296)
36 PRK07259 dihydroorotate dehydr 95.9 1.3 2.9E-05 42.6 19.7 107 83-191 27-166 (301)
37 cd02803 OYE_like_FMN_family Ol 95.8 0.24 5.3E-06 48.1 14.2 122 81-208 143-301 (327)
38 cd00958 DhnA Class I fructose- 95.8 0.11 2.4E-06 48.1 11.2 92 77-180 141-234 (235)
39 COG1646 Predicted phosphate-bi 95.8 0.38 8.2E-06 44.8 14.2 161 79-258 28-221 (240)
40 CHL00040 rbcL ribulose-1,5-bis 95.7 0.31 6.7E-06 50.2 14.7 103 65-167 169-275 (475)
41 PRK05718 keto-hydroxyglutarate 95.7 1 2.2E-05 41.5 16.8 169 58-264 13-189 (212)
42 cd02801 DUS_like_FMN Dihydrour 95.6 0.19 4.2E-06 46.1 11.7 84 77-162 65-160 (231)
43 PRK07259 dihydroorotate dehydr 95.5 0.12 2.6E-06 49.9 10.6 83 77-162 102-191 (301)
44 CHL00200 trpA tryptophan synth 95.5 2.4 5.2E-05 40.4 21.5 176 69-259 19-233 (263)
45 cd02809 alpha_hydroxyacid_oxid 95.4 0.079 1.7E-06 51.2 9.0 93 85-182 186-281 (299)
46 PRK08227 autoinducer 2 aldolas 95.4 0.63 1.4E-05 44.4 14.8 159 80-257 43-226 (264)
47 cd08206 RuBisCO_large_I_II_III 95.3 0.45 9.8E-06 48.2 14.2 99 66-165 135-238 (414)
48 TIGR03326 rubisco_III ribulose 95.3 0.65 1.4E-05 47.1 15.3 101 64-165 145-249 (412)
49 TIGR01768 GGGP-family geranylg 95.2 2 4.3E-05 40.0 17.0 169 82-268 17-220 (223)
50 cd04740 DHOD_1B_like Dihydroor 95.2 0.19 4.1E-06 48.3 10.7 85 77-164 100-190 (296)
51 cd08207 RLP_NonPhot Ribulose b 95.1 0.68 1.5E-05 46.9 14.6 101 64-165 144-248 (406)
52 cd02810 DHOD_DHPD_FMN Dihydroo 95.0 0.25 5.5E-06 47.2 11.1 84 77-162 109-198 (289)
53 cd08208 RLP_Photo Ribulose bis 95.0 0.94 2E-05 46.1 15.4 99 66-165 163-265 (424)
54 cd08213 RuBisCO_large_III Ribu 95.0 0.77 1.7E-05 46.5 14.8 100 65-165 133-236 (412)
55 cd04737 LOX_like_FMN L-Lactate 95.0 0.17 3.7E-06 50.2 9.9 95 83-182 233-330 (351)
56 PRK10550 tRNA-dihydrouridine s 95.0 1.2 2.6E-05 43.5 15.6 86 76-161 72-169 (312)
57 TIGR02708 L_lactate_ox L-lacta 94.8 0.15 3.2E-06 50.9 9.1 95 83-182 240-337 (367)
58 cd04741 DHOD_1A_like Dihydroor 94.8 0.21 4.5E-06 48.3 9.8 87 77-167 169-280 (294)
59 COG2513 PrpB PEP phosphonomuta 94.7 1.4 3E-05 42.4 14.8 142 59-206 70-226 (289)
60 PRK04208 rbcL ribulose bisopho 94.7 1.3 2.9E-05 45.5 15.8 99 66-164 163-265 (468)
61 TIGR01037 pyrD_sub1_fam dihydr 94.7 0.78 1.7E-05 44.2 13.5 85 76-163 100-192 (300)
62 cd08148 RuBisCO_large Ribulose 94.6 0.9 2E-05 45.4 14.0 100 65-165 129-232 (366)
63 cd00959 DeoC 2-deoxyribose-5-p 94.6 2.2 4.8E-05 38.8 15.6 139 62-207 53-193 (203)
64 cd00959 DeoC 2-deoxyribose-5-p 94.5 1.7 3.6E-05 39.6 14.6 126 76-220 14-153 (203)
65 PRK06852 aldolase; Validated 94.4 3 6.5E-05 40.6 16.6 165 77-257 57-265 (304)
66 PF01791 DeoC: DeoC/LacD famil 94.4 0.21 4.7E-06 46.4 8.6 126 79-220 19-168 (236)
67 cd04724 Tryptophan_synthase_al 94.3 4.7 0.0001 37.8 21.4 131 69-212 4-155 (242)
68 cd02940 DHPD_FMN Dihydropyrimi 94.3 0.18 4E-06 48.7 8.2 87 75-165 176-286 (299)
69 cd08209 RLP_DK-MTP-1-P-enolase 94.3 1.8 3.8E-05 43.7 15.3 100 65-165 126-229 (391)
70 cd03174 DRE_TIM_metallolyase D 94.3 1.3 2.9E-05 41.3 13.8 99 75-178 142-244 (265)
71 PRK05286 dihydroorotate dehydr 94.3 0.14 3.1E-06 50.6 7.4 99 76-178 222-338 (344)
72 TIGR01769 GGGP geranylgeranylg 94.2 4.5 9.9E-05 37.1 16.9 167 69-257 4-205 (205)
73 COG3142 CutC Uncharacterized p 94.1 0.14 3E-06 47.5 6.5 69 59-135 87-179 (241)
74 cd00945 Aldolase_Class_I Class 94.1 1.7 3.7E-05 38.3 13.5 89 76-164 62-153 (201)
75 PF00016 RuBisCO_large: Ribulo 94.1 0.69 1.5E-05 45.1 11.6 96 66-161 17-116 (309)
76 PLN02428 lipoic acid synthase 94.0 1.3 2.8E-05 44.0 13.4 91 61-159 181-281 (349)
77 cd02810 DHOD_DHPD_FMN Dihydroo 93.9 2.2 4.8E-05 40.7 14.8 81 107-188 79-168 (289)
78 cd07944 DRE_TIM_HOA_like 4-hyd 93.9 2 4.3E-05 40.9 14.2 116 58-179 119-238 (266)
79 PRK08318 dihydropyrimidine deh 93.8 0.38 8.3E-06 48.7 9.8 85 77-165 178-287 (420)
80 PRK05692 hydroxymethylglutaryl 93.8 1.7 3.7E-05 41.9 13.8 100 73-177 149-258 (287)
81 cd07945 DRE_TIM_CMS Leptospira 93.8 0.79 1.7E-05 44.0 11.4 98 84-182 79-188 (280)
82 cd08212 RuBisCO_large_I Ribulo 93.8 2.4 5.2E-05 43.5 15.3 96 65-160 147-246 (450)
83 cd02932 OYE_YqiM_FMN Old yello 93.7 2.1 4.5E-05 42.0 14.4 128 75-208 143-310 (336)
84 PRK12858 tagatose 1,6-diphosph 93.7 2.6 5.5E-05 41.8 14.9 115 77-207 47-190 (340)
85 cd04729 NanE N-acetylmannosami 93.6 5.6 0.00012 36.4 18.0 183 59-266 8-215 (219)
86 TIGR01949 AroFGH_arch predicte 93.6 1 2.3E-05 42.5 11.7 94 76-181 153-248 (258)
87 cd04728 ThiG Thiazole synthase 93.6 0.79 1.7E-05 43.1 10.5 89 85-182 137-226 (248)
88 cd02933 OYE_like_FMN Old yello 93.6 1.6 3.6E-05 43.0 13.5 127 76-209 142-305 (338)
89 cd02922 FCB2_FMN Flavocytochro 93.5 0.7 1.5E-05 45.8 10.7 96 82-182 224-325 (344)
90 cd00958 DhnA Class I fructose- 93.5 0.85 1.8E-05 42.2 10.7 81 75-159 72-162 (235)
91 PRK09549 mtnW 2,3-diketo-5-met 93.5 3.5 7.6E-05 41.8 15.7 98 66-164 137-238 (407)
92 PLN02535 glycolate oxidase 93.4 0.77 1.7E-05 45.8 10.9 93 85-182 237-332 (364)
93 PRK00311 panB 3-methyl-2-oxobu 93.4 0.46 9.9E-06 45.4 8.9 117 68-206 83-221 (264)
94 cd07943 DRE_TIM_HOA 4-hydroxy- 93.4 1.9 4.2E-05 40.8 13.2 100 74-178 136-239 (263)
95 cd04733 OYE_like_2_FMN Old yel 93.4 2.7 6E-05 41.2 14.7 86 75-161 138-257 (338)
96 PLN02746 hydroxymethylglutaryl 93.3 1.5 3.2E-05 43.6 12.6 38 145-182 167-209 (347)
97 TIGR00677 fadh2_euk methylenet 93.2 2.6 5.5E-05 40.6 13.9 126 76-207 71-225 (281)
98 PRK04169 geranylgeranylglycery 93.2 7.5 0.00016 36.4 17.0 172 67-260 11-216 (232)
99 PRK00208 thiG thiazole synthas 93.1 1.1 2.4E-05 42.2 10.7 89 85-182 137-226 (250)
100 cd08211 RuBisCO_large_II Ribul 93.1 2 4.4E-05 43.9 13.4 111 51-162 139-264 (439)
101 TIGR01182 eda Entner-Doudoroff 93.1 7 0.00015 35.9 16.8 184 59-284 7-199 (204)
102 TIGR03332 salvage_mtnW 2,3-dik 93.1 3.4 7.4E-05 41.9 14.9 97 68-165 144-244 (407)
103 PRK06015 keto-hydroxyglutarate 93.0 6.6 0.00014 36.0 15.5 171 77-282 14-193 (201)
104 cd03307 Mta_CmuA_like MtaA_Cmu 93.0 3.2 6.9E-05 40.4 14.5 74 81-159 173-250 (326)
105 COG0167 PyrD Dihydroorotate de 93.0 1 2.3E-05 43.9 10.8 100 77-181 171-293 (310)
106 PLN02591 tryptophan synthase 93.0 8.3 0.00018 36.5 20.2 180 68-259 5-220 (250)
107 PRK01008 queuine tRNA-ribosylt 93.0 0.88 1.9E-05 45.5 10.5 81 73-163 205-286 (372)
108 PF01207 Dus: Dihydrouridine s 92.9 1.1 2.5E-05 43.5 11.2 126 76-208 63-203 (309)
109 cd06557 KPHMT-like Ketopantoat 92.9 0.5 1.1E-05 44.8 8.3 118 68-206 80-218 (254)
110 cd03332 LMO_FMN L-Lactate 2-mo 92.8 0.54 1.2E-05 47.2 8.9 92 86-182 268-362 (383)
111 cd04739 DHOD_like Dihydroorota 92.8 0.83 1.8E-05 44.8 10.1 85 77-164 110-199 (325)
112 PRK06552 keto-hydroxyglutarate 92.8 7.8 0.00017 35.7 18.8 168 58-259 11-185 (213)
113 cd02930 DCR_FMN 2,4-dienoyl-Co 92.8 4.2 9E-05 40.3 15.0 122 80-208 138-296 (353)
114 cd07948 DRE_TIM_HCS Saccharomy 92.7 2.5 5.5E-05 40.1 13.0 98 85-183 77-183 (262)
115 cd04734 OYE_like_3_FMN Old yel 92.7 5.7 0.00012 39.2 15.9 87 75-162 130-251 (343)
116 TIGR00676 fadh2 5,10-methylene 92.7 2.6 5.6E-05 40.2 13.1 128 76-208 70-222 (272)
117 PLN02979 glycolate oxidase 92.7 0.89 1.9E-05 45.3 10.0 95 83-182 235-332 (366)
118 PRK11197 lldD L-lactate dehydr 92.7 0.55 1.2E-05 47.2 8.6 92 86-182 260-354 (381)
119 cd04724 Tryptophan_synthase_al 92.6 3.3 7.2E-05 38.8 13.4 114 81-210 93-209 (242)
120 cd07939 DRE_TIM_NifV Streptomy 92.6 1.2 2.6E-05 42.1 10.5 114 58-179 120-237 (259)
121 PRK14024 phosphoribosyl isomer 92.6 0.67 1.4E-05 43.4 8.7 93 80-177 147-240 (241)
122 cd00331 IGPS Indole-3-glycerol 92.5 8.2 0.00018 35.2 17.2 161 77-261 29-205 (217)
123 TIGR00737 nifR3_yhdG putative 92.5 3.1 6.7E-05 40.5 13.6 84 76-161 72-168 (319)
124 PRK08195 4-hyroxy-2-oxovalerat 92.5 1.2 2.6E-05 44.0 10.7 85 74-162 139-223 (337)
125 cd04738 DHOD_2_like Dihydrooro 92.4 0.73 1.6E-05 45.2 9.1 86 76-165 213-314 (327)
126 cd02812 PcrB_like PcrB_like pr 92.4 6.6 0.00014 36.5 14.8 181 68-269 4-217 (219)
127 PLN02826 dihydroorotate dehydr 92.4 0.87 1.9E-05 46.2 9.8 87 76-166 273-376 (409)
128 cd00452 KDPG_aldolase KDPG and 92.4 1.4 3.1E-05 39.5 10.3 95 83-210 67-164 (190)
129 PRK11858 aksA trans-homoaconit 92.4 2.8 6.1E-05 42.0 13.3 104 84-188 80-194 (378)
130 PRK10415 tRNA-dihydrouridine s 92.3 4.2 9E-05 39.8 14.2 84 76-161 74-170 (321)
131 cd07941 DRE_TIM_LeuA3 Desulfob 92.3 2.3 4.9E-05 40.6 12.0 101 83-184 82-194 (273)
132 cd02940 DHPD_FMN Dihydropyrimi 92.2 1.6 3.5E-05 42.1 11.1 87 76-165 110-205 (299)
133 cd07940 DRE_TIM_IPMS 2-isoprop 92.1 3.8 8.2E-05 38.9 13.3 116 59-180 125-245 (268)
134 cd07938 DRE_TIM_HMGL 3-hydroxy 91.8 6 0.00013 37.8 14.4 100 73-177 143-252 (274)
135 PLN02493 probable peroxisomal 91.8 1.3 2.8E-05 44.3 10.0 94 84-182 237-333 (367)
136 cd04731 HisF The cyclase subun 91.8 1.5 3.3E-05 40.8 10.1 90 81-177 151-241 (243)
137 PLN02495 oxidoreductase, actin 91.7 1.8 3.9E-05 43.5 11.0 89 74-165 122-219 (385)
138 PF01702 TGT: Queuine tRNA-rib 91.6 1.1 2.3E-05 41.9 8.8 78 74-160 63-141 (238)
139 cd07939 DRE_TIM_NifV Streptomy 91.6 4 8.6E-05 38.5 12.8 43 141-184 111-153 (259)
140 PLN02433 uroporphyrinogen deca 91.6 5.9 0.00013 39.0 14.5 70 82-158 182-258 (345)
141 TIGR03217 4OH_2_O_val_ald 4-hy 91.5 1.7 3.6E-05 42.9 10.4 84 75-162 139-222 (333)
142 cd03174 DRE_TIM_metallolyase D 91.5 2.2 4.8E-05 39.8 10.9 45 137-182 143-187 (265)
143 PF03932 CutC: CutC family; I 91.5 0.5 1.1E-05 43.3 6.2 82 58-144 82-189 (201)
144 PLN02591 tryptophan synthase 91.3 7.2 0.00016 36.9 14.1 36 80-122 94-129 (250)
145 cd00381 IMPDH IMPDH: The catal 91.3 3.9 8.5E-05 40.1 12.8 68 81-159 95-162 (325)
146 PTZ00413 lipoate synthase; Pro 91.3 2.2 4.7E-05 42.8 10.9 76 83-159 243-329 (398)
147 cd02811 IDI-2_FMN Isopentenyl- 91.3 1.5 3.1E-05 43.1 9.7 95 82-182 192-308 (326)
148 PRK02083 imidazole glycerol ph 91.1 8.3 0.00018 36.1 14.4 78 82-167 33-110 (253)
149 PRK09432 metF 5,10-methylenete 91.0 13 0.00028 36.0 15.9 125 76-208 94-241 (296)
150 cd04739 DHOD_like Dihydroorota 91.0 17 0.00036 35.7 20.5 81 110-192 84-173 (325)
151 CHL00162 thiG thiamin biosynth 91.0 2.9 6.3E-05 39.6 10.8 89 84-181 150-239 (267)
152 TIGR02090 LEU1_arch isopropylm 90.9 7.1 0.00015 38.9 14.3 102 82-184 74-184 (363)
153 cd04730 NPD_like 2-Nitropropan 90.8 2.2 4.7E-05 39.2 10.0 78 84-167 114-192 (236)
154 PRK05692 hydroxymethylglutaryl 90.8 4.3 9.3E-05 39.1 12.3 97 85-182 85-196 (287)
155 PRK07565 dihydroorotate dehydr 90.8 2.1 4.7E-05 42.0 10.4 84 77-164 112-201 (334)
156 cd02809 alpha_hydroxyacid_oxid 90.7 2.7 5.9E-05 40.5 11.0 74 77-161 127-201 (299)
157 cd02931 ER_like_FMN Enoate red 90.7 13 0.00028 37.3 16.1 129 74-208 138-325 (382)
158 cd06557 KPHMT-like Ketopantoat 90.7 3.1 6.7E-05 39.5 11.0 103 65-186 15-131 (254)
159 PRK13753 dihydropteroate synth 90.7 7.1 0.00015 37.6 13.5 120 59-191 4-128 (279)
160 PRK02506 dihydroorotate dehydr 90.6 5.2 0.00011 38.9 12.9 84 107-191 73-166 (310)
161 cd04735 OYE_like_4_FMN Old yel 90.6 5.4 0.00012 39.5 13.1 89 75-164 133-259 (353)
162 TIGR01036 pyrD_sub2 dihydrooro 90.5 0.64 1.4E-05 45.8 6.4 86 76-165 221-322 (335)
163 TIGR01037 pyrD_sub1_fam dihydr 90.4 7.7 0.00017 37.2 13.8 77 109-187 74-162 (300)
164 COG0042 tRNA-dihydrouridine sy 90.4 4.3 9.4E-05 39.8 12.1 128 74-210 74-220 (323)
165 cd04736 MDH_FMN Mandelate dehy 90.4 2 4.3E-05 42.9 9.7 91 85-182 250-343 (361)
166 PF00290 Trp_syntA: Tryptophan 90.4 14 0.00031 35.1 15.2 178 69-259 14-228 (259)
167 cd07941 DRE_TIM_LeuA3 Desulfob 90.3 2.6 5.7E-05 40.2 10.3 98 74-176 146-247 (273)
168 PRK07226 fructose-bisphosphate 90.3 2.2 4.8E-05 40.5 9.7 85 68-157 84-177 (267)
169 PRK08649 inosine 5-monophospha 90.2 0.96 2.1E-05 45.2 7.4 73 80-160 142-215 (368)
170 cd07938 DRE_TIM_HMGL 3-hydroxy 90.1 6.4 0.00014 37.6 12.8 99 83-182 77-190 (274)
171 cd07937 DRE_TIM_PC_TC_5S Pyruv 90.1 3.4 7.5E-05 39.4 10.9 112 58-177 128-245 (275)
172 PRK05437 isopentenyl pyrophosp 90.1 1.9 4.1E-05 42.8 9.4 94 82-182 200-315 (352)
173 TIGR00007 phosphoribosylformim 90.1 1.9 4.1E-05 39.7 8.9 75 82-164 148-222 (230)
174 TIGR00222 panB 3-methyl-2-oxob 90.0 2.3 5.1E-05 40.5 9.5 84 63-160 78-180 (263)
175 PRK12330 oxaloacetate decarbox 90.0 4.9 0.00011 41.8 12.6 99 75-177 151-253 (499)
176 PF01207 Dus: Dihydrouridine s 90.0 0.79 1.7E-05 44.6 6.5 84 78-167 137-220 (309)
177 PRK05286 dihydroorotate dehydr 89.9 3.5 7.7E-05 40.7 11.2 89 75-164 153-249 (344)
178 PRK13523 NADPH dehydrogenase N 89.9 5.7 0.00012 39.2 12.5 90 75-164 131-251 (337)
179 PRK11858 aksA trans-homoaconit 89.9 2.8 6E-05 42.0 10.5 111 59-177 127-241 (378)
180 PF00682 HMGL-like: HMGL-like 89.8 12 0.00027 34.3 14.2 138 74-221 9-162 (237)
181 TIGR03151 enACPred_II putative 89.8 3.3 7E-05 40.3 10.6 118 83-208 120-241 (307)
182 PLN02424 ketopantoate hydroxym 89.8 2.9 6.4E-05 41.1 10.2 56 68-135 103-159 (332)
183 PF00682 HMGL-like: HMGL-like 89.8 3.9 8.4E-05 37.7 10.7 43 139-182 107-149 (237)
184 PRK07226 fructose-bisphosphate 89.8 6.2 0.00014 37.4 12.4 93 77-181 158-252 (267)
185 PRK13125 trpA tryptophan synth 89.5 18 0.00039 33.8 23.8 180 68-259 7-216 (244)
186 TIGR02660 nifV_homocitr homoci 89.5 3.2 6.9E-05 41.3 10.5 110 59-176 124-237 (365)
187 TIGR00737 nifR3_yhdG putative 89.5 1.8 4E-05 42.1 8.7 82 81-168 149-230 (319)
188 cd00019 AP2Ec AP endonuclease 89.4 16 0.00035 34.4 15.0 137 79-217 10-176 (279)
189 TIGR00742 yjbN tRNA dihydrouri 89.4 1.8 3.9E-05 42.4 8.6 86 77-168 139-231 (318)
190 TIGR00126 deoC deoxyribose-pho 89.4 12 0.00026 34.5 13.5 127 75-220 14-154 (211)
191 PRK02083 imidazole glycerol ph 89.4 4.1 9E-05 38.2 10.8 87 81-178 155-246 (253)
192 PRK12858 tagatose 1,6-diphosph 89.3 7.4 0.00016 38.6 12.7 129 59-188 83-247 (340)
193 PLN02433 uroporphyrinogen deca 89.2 18 0.00038 35.7 15.5 88 139-234 178-278 (345)
194 cd00537 MTHFR Methylenetetrahy 89.2 20 0.00044 33.9 15.6 128 76-207 70-224 (274)
195 cd03307 Mta_CmuA_like MtaA_Cmu 89.2 12 0.00027 36.3 14.3 94 139-239 170-274 (326)
196 PRK10415 tRNA-dihydrouridine s 89.2 2.5 5.5E-05 41.3 9.4 84 79-168 149-232 (321)
197 PF05690 ThiG: Thiazole biosyn 89.2 1.6 3.4E-05 40.9 7.4 90 83-181 135-225 (247)
198 TIGR00126 deoC deoxyribose-pho 89.1 18 0.00039 33.3 16.3 113 61-174 53-167 (211)
199 PRK06252 methylcobalamin:coenz 89.0 2.8 6.2E-05 40.9 9.7 74 81-159 182-259 (339)
200 PRK11572 copper homeostasis pr 89.0 3.3 7.2E-05 39.1 9.6 88 59-160 87-198 (248)
201 PRK14041 oxaloacetate decarbox 89.0 7.1 0.00015 40.3 12.9 97 75-177 149-249 (467)
202 TIGR03849 arch_ComA phosphosul 89.0 4 8.7E-05 38.3 10.1 77 79-161 71-155 (237)
203 TIGR03151 enACPred_II putative 88.9 6.2 0.00013 38.4 11.9 88 81-187 76-166 (307)
204 TIGR02151 IPP_isom_2 isopenten 88.9 1.9 4.1E-05 42.4 8.4 96 82-182 193-308 (333)
205 PRK08318 dihydropyrimidine deh 88.9 4.2 9.1E-05 41.2 11.1 174 74-270 108-297 (420)
206 cd00381 IMPDH IMPDH: The catal 88.9 19 0.00041 35.3 15.3 159 83-266 49-235 (325)
207 PRK01033 imidazole glycerol ph 88.8 4.1 9E-05 38.5 10.3 78 82-166 155-232 (258)
208 TIGR00222 panB 3-methyl-2-oxob 88.7 3.7 7.9E-05 39.2 9.8 89 145-235 27-133 (263)
209 PRK13397 3-deoxy-7-phosphohept 88.5 2.6 5.5E-05 40.0 8.6 83 75-160 132-219 (250)
210 TIGR00736 nifR3_rel_arch TIM-b 88.5 2.3 5E-05 39.8 8.2 76 80-164 149-224 (231)
211 TIGR02660 nifV_homocitr homoci 88.5 8.6 0.00019 38.3 12.8 99 83-182 76-183 (365)
212 TIGR02090 LEU1_arch isopropylm 88.4 3.3 7.1E-05 41.3 9.8 112 59-178 123-238 (363)
213 KOG2368 Hydroxymethylglutaryl- 88.4 4.4 9.6E-05 37.8 9.7 124 10-159 48-188 (316)
214 COG0159 TrpA Tryptophan syntha 88.4 24 0.00052 33.7 22.2 180 72-273 24-243 (265)
215 cd07937 DRE_TIM_PC_TC_5S Pyruv 88.3 24 0.00052 33.7 15.5 16 139-154 117-132 (275)
216 cd07940 DRE_TIM_IPMS 2-isoprop 88.3 8.8 0.00019 36.3 12.3 44 140-184 114-157 (268)
217 PRK12331 oxaloacetate decarbox 88.3 8.2 0.00018 39.7 12.8 97 75-177 150-250 (448)
218 PRK06806 fructose-bisphosphate 88.3 5 0.00011 38.6 10.6 114 84-208 89-221 (281)
219 PRK08255 salicylyl-CoA 5-hydro 88.2 9.3 0.0002 41.9 13.9 89 75-164 540-662 (765)
220 PRK01130 N-acetylmannosamine-6 88.2 6.5 0.00014 36.0 11.0 110 83-209 79-194 (221)
221 cd06556 ICL_KPHMT Members of t 88.2 6 0.00013 37.2 10.8 90 90-187 30-130 (240)
222 PF01070 FMN_dh: FMN-dependent 88.2 1.2 2.7E-05 44.2 6.5 93 85-182 239-334 (356)
223 COG0826 Collagenase and relate 88.1 3.7 7.9E-05 40.8 9.8 78 85-163 19-102 (347)
224 PRK00112 tgt queuine tRNA-ribo 88.1 5 0.00011 40.1 10.8 82 73-164 189-272 (366)
225 COG0167 PyrD Dihydroorotate de 88.1 4.4 9.6E-05 39.6 10.1 85 77-164 107-197 (310)
226 PRK00311 panB 3-methyl-2-oxobu 88.0 4 8.6E-05 39.0 9.6 102 126-234 14-133 (264)
227 PRK09140 2-dehydro-3-deoxy-6-p 88.0 21 0.00046 32.6 15.1 163 58-257 8-179 (206)
228 cd04732 HisA HisA. Phosphorib 87.9 2.6 5.7E-05 38.7 8.3 78 81-166 148-225 (234)
229 TIGR01304 IMP_DH_rel_2 IMP deh 87.9 1.4 3E-05 44.1 6.7 72 79-158 142-214 (369)
230 cd07945 DRE_TIM_CMS Leptospira 87.9 8.6 0.00019 36.9 11.9 98 75-177 143-244 (280)
231 TIGR00262 trpA tryptophan synt 87.8 25 0.00054 33.3 15.1 35 80-121 103-137 (256)
232 KOG0538 Glycolate oxidase [Ene 87.8 3.9 8.5E-05 39.8 9.3 102 59-167 195-314 (363)
233 COG1850 RbcL Ribulose 1,5-bisp 87.8 7.1 0.00015 39.2 11.3 136 66-207 158-304 (429)
234 COG1609 PurR Transcriptional r 87.7 16 0.00035 35.7 14.0 108 77-190 159-274 (333)
235 cd04730 NPD_like 2-Nitropropan 87.7 6 0.00013 36.3 10.5 104 79-208 67-176 (236)
236 TIGR01163 rpe ribulose-phospha 87.7 20 0.00044 32.0 19.0 168 75-261 7-197 (210)
237 PRK08999 hypothetical protein; 87.7 22 0.00047 34.2 14.8 111 81-208 146-299 (312)
238 PRK08645 bifunctional homocyst 87.6 22 0.00048 38.0 15.9 131 75-209 392-556 (612)
239 cd07943 DRE_TIM_HOA 4-hydroxy- 87.6 12 0.00026 35.3 12.7 91 83-182 89-182 (263)
240 cd01302 Cyclic_amidohydrolases 87.6 3.4 7.4E-05 40.5 9.2 98 87-194 89-204 (337)
241 PRK00115 hemE uroporphyrinogen 87.5 21 0.00045 35.1 14.7 94 139-239 185-290 (346)
242 cd01295 AdeC Adenine deaminase 87.5 2.8 6.1E-05 42.4 8.8 74 144-218 27-110 (422)
243 cd02801 DUS_like_FMN Dihydrour 87.5 1.8 4E-05 39.5 6.9 83 79-167 138-220 (231)
244 PRK07094 biotin synthase; Prov 87.5 29 0.00062 33.6 15.6 111 75-193 69-192 (323)
245 PF01261 AP_endonuc_2: Xylose 87.4 11 0.00024 33.1 11.8 132 86-221 2-167 (213)
246 TIGR01949 AroFGH_arch predicte 87.2 6.6 0.00014 37.0 10.6 94 60-159 71-175 (258)
247 TIGR01036 pyrD_sub2 dihydrooro 87.2 5.4 0.00012 39.3 10.3 87 77-164 152-248 (335)
248 PRK09389 (R)-citramalate synth 87.1 9.4 0.0002 39.7 12.5 105 82-187 76-191 (488)
249 PLN02321 2-isopropylmalate syn 87.0 4 8.6E-05 43.7 9.9 103 73-178 234-341 (632)
250 PF01791 DeoC: DeoC/LacD famil 87.0 13 0.00029 34.3 12.4 118 64-184 57-191 (236)
251 PLN02489 homocysteine S-methyl 87.0 23 0.0005 34.9 14.7 102 76-191 160-276 (335)
252 cd00331 IGPS Indole-3-glycerol 86.9 5.8 0.00013 36.1 9.8 79 85-171 134-212 (217)
253 cd07944 DRE_TIM_HOA_like 4-hyd 86.9 29 0.00062 33.0 14.9 137 74-221 15-163 (266)
254 TIGR01163 rpe ribulose-phospha 86.8 4.4 9.5E-05 36.4 8.9 76 91-174 125-207 (210)
255 PLN02746 hydroxymethylglutaryl 86.6 6.3 0.00014 39.1 10.4 84 73-161 191-274 (347)
256 cd04722 TIM_phosphate_binding 86.6 8.2 0.00018 33.3 10.3 108 79-191 12-123 (200)
257 PRK10550 tRNA-dihydrouridine s 86.5 3.1 6.7E-05 40.6 8.2 81 81-167 150-231 (312)
258 PRK01060 endonuclease IV; Prov 86.5 29 0.00062 32.6 16.6 126 81-207 14-165 (281)
259 cd07948 DRE_TIM_HCS Saccharomy 86.5 6.1 0.00013 37.5 10.0 96 76-177 138-237 (262)
260 PF07302 AroM: AroM protein; 86.4 24 0.00052 32.8 13.5 140 64-212 53-206 (221)
261 PLN02321 2-isopropylmalate syn 86.4 28 0.00061 37.4 15.8 61 75-141 104-170 (632)
262 TIGR03572 WbuZ glycosyl amidat 86.4 4.4 9.5E-05 37.4 8.8 75 82-163 156-230 (232)
263 TIGR03572 WbuZ glycosyl amidat 86.4 5.7 0.00012 36.6 9.5 103 88-205 92-214 (232)
264 PRK10605 N-ethylmaleimide redu 86.3 15 0.00032 36.7 13.0 131 75-215 148-320 (362)
265 PRK14042 pyruvate carboxylase 86.0 9 0.00019 40.8 11.8 98 58-161 133-230 (596)
266 PLN02424 ketopantoate hydroxym 86.0 6.2 0.00014 38.8 9.8 75 145-220 47-136 (332)
267 COG2022 ThiG Uncharacterized e 85.9 5.2 0.00011 37.5 8.7 86 84-178 143-229 (262)
268 TIGR01302 IMP_dehydrog inosine 85.9 12 0.00027 38.3 12.5 141 83-239 227-384 (450)
269 cd04747 OYE_like_5_FMN Old yel 85.8 8.2 0.00018 38.5 10.9 88 75-162 133-257 (361)
270 PLN02979 glycolate oxidase 85.8 32 0.0007 34.4 14.9 75 76-162 131-253 (366)
271 cd04722 TIM_phosphate_binding 85.8 8.1 0.00017 33.4 9.8 110 85-209 77-191 (200)
272 PRK11815 tRNA-dihydrouridine s 85.8 4.2 9.1E-05 40.0 8.7 85 77-167 149-240 (333)
273 TIGR00587 nfo apurinic endonuc 85.6 33 0.00071 32.5 16.4 127 80-207 12-163 (274)
274 PRK07028 bifunctional hexulose 85.6 3.3 7.2E-05 42.1 8.2 106 84-208 73-181 (430)
275 PRK00915 2-isopropylmalate syn 85.6 15 0.00032 38.5 13.1 103 79-182 79-190 (513)
276 PRK08185 hypothetical protein; 85.5 14 0.00031 35.6 12.0 118 76-209 79-220 (283)
277 TIGR00736 nifR3_rel_arch TIM-b 85.5 18 0.00039 33.8 12.4 83 74-160 75-168 (231)
278 TIGR00640 acid_CoA_mut_C methy 85.4 11 0.00024 32.0 10.1 84 81-178 42-125 (132)
279 COG2159 Predicted metal-depend 85.3 24 0.00052 34.1 13.6 134 85-220 55-201 (293)
280 TIGR00343 pyridoxal 5'-phospha 85.2 2.4 5.1E-05 40.8 6.4 85 115-219 187-275 (287)
281 PRK12344 putative alpha-isopro 85.1 16 0.00034 38.4 13.0 104 84-188 90-207 (524)
282 PRK13111 trpA tryptophan synth 85.0 14 0.0003 35.2 11.5 98 80-220 105-212 (258)
283 TIGR00977 LeuA_rel 2-isopropyl 85.0 13 0.00027 39.1 12.2 102 82-184 84-197 (526)
284 cd01575 PBP1_GntR Ligand-bindi 85.0 25 0.00054 31.9 13.1 132 77-220 40-186 (268)
285 cd02803 OYE_like_FMN_family Ol 84.9 6.5 0.00014 38.1 9.6 88 74-168 223-319 (327)
286 PF00290 Trp_syntA: Tryptophan 84.8 6.6 0.00014 37.4 9.3 84 63-163 143-229 (259)
287 cd04729 NanE N-acetylmannosami 84.8 11 0.00025 34.3 10.7 111 82-209 82-198 (219)
288 PRK00278 trpC indole-3-glycero 84.7 36 0.00079 32.2 17.1 159 81-261 72-244 (260)
289 cd04741 DHOD_1A_like Dihydroor 84.6 34 0.00074 32.9 14.3 82 109-191 72-166 (294)
290 PRK12331 oxaloacetate decarbox 84.5 27 0.00057 36.0 14.1 138 75-221 22-179 (448)
291 TIGR01464 hemE uroporphyrinoge 84.5 29 0.00063 33.8 14.1 44 139-182 179-226 (338)
292 PF00977 His_biosynth: Histidi 84.5 8 0.00017 35.8 9.6 74 81-162 149-222 (229)
293 cd00717 URO-D Uroporphyrinogen 84.3 34 0.00074 33.3 14.4 93 139-238 176-280 (335)
294 TIGR03822 AblA_like_2 lysine-2 84.1 44 0.00095 32.6 15.4 128 73-207 116-251 (321)
295 PLN03228 methylthioalkylmalate 84.1 44 0.00096 34.9 15.7 138 75-221 102-264 (503)
296 CHL00200 trpA tryptophan synth 84.1 20 0.00044 34.1 12.2 19 80-98 107-125 (263)
297 TIGR00735 hisF imidazoleglycer 84.0 9.1 0.0002 36.0 9.8 89 81-177 157-247 (254)
298 PRK11572 copper homeostasis pr 84.0 12 0.00025 35.5 10.4 129 65-207 56-188 (248)
299 PF04131 NanE: Putative N-acet 84.0 13 0.00028 33.8 10.1 124 76-218 48-177 (192)
300 cd00739 DHPS DHPS subgroup of 83.9 10 0.00022 35.9 10.2 119 60-190 4-128 (257)
301 PRK09875 putative hydrolase; P 83.9 43 0.00094 32.4 14.8 76 108-190 133-210 (292)
302 cd00377 ICL_PEPM Members of th 83.8 21 0.00046 33.4 12.2 91 90-182 27-136 (243)
303 PF03060 NMO: Nitronate monoox 83.6 3.6 7.9E-05 40.3 7.2 119 83-208 147-270 (330)
304 TIGR00742 yjbN tRNA dihydrouri 83.6 45 0.00098 32.6 14.8 86 75-162 63-163 (318)
305 PRK05660 HemN family oxidoredu 83.6 19 0.00042 35.9 12.5 100 91-194 57-172 (378)
306 PRK14040 oxaloacetate decarbox 83.6 23 0.0005 37.8 13.6 80 77-162 153-232 (593)
307 PRK08446 coproporphyrinogen II 83.5 25 0.00055 34.6 13.2 112 78-193 33-162 (350)
308 PF13407 Peripla_BP_4: Peripla 83.5 6.4 0.00014 35.9 8.5 73 113-191 16-89 (257)
309 cd06267 PBP1_LacI_sugar_bindin 83.4 4.5 9.8E-05 36.4 7.4 131 76-218 39-184 (264)
310 PLN03228 methylthioalkylmalate 83.3 8.2 0.00018 40.3 9.9 133 73-216 233-372 (503)
311 PRK13585 1-(5-phosphoribosyl)- 83.2 6.2 0.00013 36.5 8.3 86 82-175 152-238 (241)
312 COG5016 Pyruvate/oxaloacetate 83.2 7.4 0.00016 39.3 9.0 94 60-164 142-236 (472)
313 TIGR00973 leuA_bact 2-isopropy 83.1 8.4 0.00018 40.1 9.9 102 73-178 140-247 (494)
314 PRK09389 (R)-citramalate synth 83.0 9.8 0.00021 39.5 10.4 99 73-177 137-239 (488)
315 PRK08195 4-hyroxy-2-oxovalerat 83.0 21 0.00046 35.2 12.3 45 137-182 141-185 (337)
316 PRK13361 molybdenum cofactor b 83.0 10 0.00022 37.0 10.1 101 73-182 42-152 (329)
317 TIGR00977 LeuA_rel 2-isopropyl 83.0 7.5 0.00016 40.8 9.6 84 74-162 149-232 (526)
318 cd02933 OYE_like_FMN Old yello 82.9 7.2 0.00016 38.5 9.0 83 75-167 237-321 (338)
319 PF01180 DHO_dh: Dihydroorotat 82.9 2 4.4E-05 41.3 5.0 82 79-164 176-277 (295)
320 cd04731 HisF The cyclase subun 82.9 10 0.00022 35.1 9.7 79 80-166 28-106 (243)
321 PRK00748 1-(5-phosphoribosyl)- 82.9 6.7 0.00015 36.0 8.3 76 82-165 149-225 (233)
322 TIGR02708 L_lactate_ox L-lacta 82.9 55 0.0012 32.8 15.5 73 77-161 144-257 (367)
323 PRK09250 fructose-bisphosphate 82.8 12 0.00026 37.1 10.3 103 78-181 216-338 (348)
324 PLN02535 glycolate oxidase 82.8 45 0.00097 33.4 14.5 75 76-162 134-253 (364)
325 PRK04302 triosephosphate isome 82.8 29 0.00062 31.9 12.5 65 85-161 78-142 (223)
326 PRK09282 pyruvate carboxylase 82.7 21 0.00046 38.0 12.9 81 75-161 150-230 (592)
327 PLN02493 probable peroxisomal 82.6 52 0.0011 33.0 14.9 74 77-162 133-254 (367)
328 PRK02412 aroD 3-dehydroquinate 82.6 40 0.00087 31.7 13.6 107 75-190 91-205 (253)
329 cd04726 KGPDC_HPS 3-Keto-L-gul 82.6 27 0.00059 31.0 12.1 108 83-209 68-178 (202)
330 TIGR01496 DHPS dihydropteroate 82.5 14 0.0003 35.0 10.5 117 60-190 3-126 (257)
331 PRK06252 methylcobalamin:coenz 82.4 42 0.00091 32.6 14.2 44 139-182 179-228 (339)
332 PRK11840 bifunctional sulfur c 82.3 16 0.00035 35.9 10.9 88 85-181 211-299 (326)
333 TIGR01108 oadA oxaloacetate de 82.3 10 0.00022 40.3 10.4 81 75-161 145-225 (582)
334 TIGR00430 Q_tRNA_tgt tRNA-guan 82.2 15 0.00032 36.8 11.0 81 74-164 186-268 (368)
335 COG0274 DeoC Deoxyribose-phosp 82.2 25 0.00053 32.8 11.5 129 62-221 61-192 (228)
336 TIGR01305 GMP_reduct_1 guanosi 82.1 9.4 0.0002 37.7 9.2 71 85-160 164-241 (343)
337 TIGR01303 IMP_DH_rel_1 IMP deh 82.0 19 0.0004 37.4 11.9 143 81-240 226-387 (475)
338 TIGR00510 lipA lipoate synthas 82.0 8.6 0.00019 37.4 9.0 77 137-217 188-277 (302)
339 PRK07107 inosine 5-monophospha 82.0 6.5 0.00014 41.0 8.6 112 81-207 243-372 (502)
340 PRK12677 xylose isomerase; Pro 81.7 49 0.0011 33.2 14.6 141 81-221 33-217 (384)
341 TIGR00735 hisF imidazoleglycer 81.7 11 0.00023 35.5 9.4 88 81-176 32-120 (254)
342 COG4981 Enoyl reductase domain 81.5 44 0.00095 35.2 14.0 145 62-217 37-219 (717)
343 PRK06843 inosine 5-monophospha 81.3 23 0.00049 36.0 11.9 142 81-240 154-314 (404)
344 PRK00915 2-isopropylmalate syn 81.3 11 0.00024 39.4 10.1 115 58-178 130-250 (513)
345 PRK12581 oxaloacetate decarbox 81.3 19 0.00041 37.3 11.5 97 75-177 159-259 (468)
346 TIGR00449 tgt_general tRNA-gua 81.1 16 0.00034 36.6 10.7 79 74-163 185-266 (367)
347 TIGR03128 RuMP_HxlA 3-hexulose 81.0 31 0.00068 30.9 11.9 111 84-209 68-178 (206)
348 TIGR02151 IPP_isom_2 isopenten 81.0 57 0.0012 32.0 14.5 136 63-208 54-201 (333)
349 PRK00748 1-(5-phosphoribosyl)- 80.9 16 0.00034 33.5 10.1 69 141-216 147-218 (233)
350 PRK02261 methylaspartate mutas 80.9 32 0.0007 29.3 11.2 91 81-180 43-134 (137)
351 KOG2335 tRNA-dihydrouridine sy 80.8 9 0.0002 38.0 8.6 82 76-161 152-234 (358)
352 cd03465 URO-D_like The URO-D _ 80.8 55 0.0012 31.5 15.0 52 139-190 167-229 (330)
353 PRK12344 putative alpha-isopro 80.7 13 0.00029 38.9 10.5 113 58-176 136-253 (524)
354 PRK10528 multifunctional acyl- 80.7 31 0.00066 30.6 11.6 82 96-182 46-140 (191)
355 TIGR02082 metH 5-methyltetrahy 80.7 1.1E+02 0.0024 35.4 18.4 128 75-215 140-296 (1178)
356 PRK13475 ribulose bisphosphate 80.7 33 0.00072 35.2 12.9 94 65-160 160-263 (443)
357 TIGR03217 4OH_2_O_val_ald 4-hy 80.7 60 0.0013 32.0 14.5 15 257-271 227-241 (333)
358 COG0413 PanB Ketopantoate hydr 80.6 17 0.00037 34.6 10.0 63 62-136 77-139 (268)
359 TIGR02637 RhaS rhamnose ABC tr 80.5 21 0.00046 33.5 11.1 54 133-191 36-90 (302)
360 PRK09490 metH B12-dependent me 80.4 39 0.00085 39.1 14.7 132 75-216 156-313 (1229)
361 PRK00278 trpC indole-3-glycero 80.1 5.1 0.00011 38.0 6.6 85 125-219 47-143 (260)
362 smart00518 AP2Ec AP endonuclea 79.9 52 0.0011 30.7 17.0 125 80-207 11-159 (273)
363 cd02932 OYE_YqiM_FMN Old yello 79.9 63 0.0014 31.6 16.0 85 41-136 5-99 (336)
364 cd06291 PBP1_Qymf_like Ligand 79.7 43 0.00093 30.4 12.6 124 77-219 40-181 (265)
365 TIGR01859 fruc_bis_ald_ fructo 79.6 26 0.00056 33.7 11.3 128 76-215 81-227 (282)
366 PF01487 DHquinase_I: Type I 3 79.4 13 0.00027 34.2 8.9 103 75-190 71-182 (224)
367 PLN02540 methylenetetrahydrofo 79.4 63 0.0014 34.3 14.8 129 76-208 70-234 (565)
368 COG2070 Dioxygenases related t 79.4 3.7 8E-05 40.6 5.5 120 82-207 137-263 (336)
369 PRK13111 trpA tryptophan synth 79.4 58 0.0013 30.9 23.1 178 69-260 16-231 (258)
370 cd00429 RPE Ribulose-5-phospha 79.2 46 0.00099 29.6 17.9 168 75-261 8-198 (211)
371 PF01884 PcrB: PcrB family; I 79.2 4.2 9E-05 38.1 5.5 174 59-258 6-212 (230)
372 PLN02495 oxidoreductase, actin 79.2 35 0.00077 34.4 12.5 84 109-193 96-193 (385)
373 PRK13585 1-(5-phosphoribosyl)- 79.1 9.9 0.00021 35.1 8.1 83 67-161 76-170 (241)
374 PF02219 MTHFR: Methylenetetra 79.0 39 0.00084 32.3 12.4 126 76-207 82-236 (287)
375 cd03465 URO-D_like The URO-D _ 79.0 17 0.00038 35.0 10.1 75 81-159 170-249 (330)
376 cd06287 PBP1_LacI_like_8 Ligan 78.9 55 0.0012 30.3 14.8 82 77-160 102-185 (269)
377 PRK04180 pyridoxal biosynthesi 78.9 8 0.00017 37.4 7.4 95 105-219 173-281 (293)
378 COG1830 FbaB DhnA-type fructos 78.9 34 0.00075 32.6 11.6 104 65-180 148-257 (265)
379 PF02548 Pantoate_transf: Keto 78.9 8 0.00017 36.9 7.3 63 62-136 78-140 (261)
380 PRK15452 putative protease; Pr 78.6 15 0.00032 37.8 9.8 74 86-162 17-98 (443)
381 cd02911 arch_FMN Archeal FMN-b 78.4 29 0.00062 32.3 11.0 80 76-159 82-171 (233)
382 PRK00164 moaA molybdenum cofac 78.3 20 0.00043 34.9 10.3 104 71-182 44-156 (331)
383 cd06289 PBP1_MalI_like Ligand- 78.2 52 0.0011 29.7 13.1 132 76-220 39-187 (268)
384 PRK01033 imidazole glycerol ph 78.1 24 0.00051 33.3 10.5 127 66-215 73-223 (258)
385 smart00729 Elp3 Elongator prot 78.0 25 0.00055 30.4 10.1 45 138-182 134-179 (216)
386 PRK07709 fructose-bisphosphate 78.0 39 0.00084 32.7 11.9 121 76-209 84-225 (285)
387 cd01391 Periplasmic_Binding_Pr 77.8 30 0.00066 30.4 10.7 95 76-182 42-151 (269)
388 PRK11613 folP dihydropteroate 77.7 21 0.00046 34.4 10.1 120 59-190 17-141 (282)
389 PRK05437 isopentenyl pyrophosp 77.7 49 0.0011 32.8 13.0 137 63-209 61-209 (352)
390 TIGR01304 IMP_DH_rel_2 IMP deh 77.6 11 0.00024 37.8 8.3 40 122-165 249-289 (369)
391 TIGR01235 pyruv_carbox pyruvat 77.6 21 0.00046 41.0 11.5 91 76-172 686-777 (1143)
392 PRK07998 gatY putative fructos 77.6 20 0.00043 34.6 9.8 124 76-209 81-221 (283)
393 TIGR03821 AblA_like_1 lysine-2 77.4 75 0.0016 31.1 14.3 128 74-207 123-257 (321)
394 PRK09240 thiH thiamine biosynt 77.4 22 0.00047 35.5 10.4 79 74-161 102-181 (371)
395 TIGR03128 RuMP_HxlA 3-hexulose 77.3 35 0.00075 30.6 11.0 99 62-179 105-205 (206)
396 cd02808 GltS_FMN Glutamate syn 77.2 28 0.00062 35.0 11.3 73 90-166 236-320 (392)
397 PLN02826 dihydroorotate dehydr 77.2 27 0.00058 35.5 11.1 90 77-167 202-303 (409)
398 cd04738 DHOD_2_like Dihydrooro 77.1 76 0.0016 31.0 17.8 87 126-218 127-236 (327)
399 PRK07028 bifunctional hexulose 77.0 38 0.00082 34.4 12.3 111 85-209 124-236 (430)
400 PF01068 DNA_ligase_A_M: ATP d 76.9 8.3 0.00018 34.4 6.7 58 105-162 128-185 (202)
401 PRK10481 hypothetical protein; 76.9 64 0.0014 30.0 13.6 125 64-197 56-194 (224)
402 PRK09195 gatY tagatose-bisphos 76.9 31 0.00067 33.3 10.9 121 76-209 81-224 (284)
403 PRK08227 autoinducer 2 aldolas 76.8 64 0.0014 30.8 12.9 64 116-181 183-247 (264)
404 cd03309 CmuC_like CmuC_like. P 76.4 19 0.00041 35.3 9.5 76 81-160 157-241 (321)
405 PRK05458 guanosine 5'-monophos 76.3 17 0.00037 35.8 9.1 74 84-164 153-234 (326)
406 cd00452 KDPG_aldolase KDPG and 76.3 56 0.0012 29.1 17.2 151 77-258 14-172 (190)
407 PRK09485 mmuM homocysteine met 76.1 72 0.0016 30.9 13.4 102 75-190 132-248 (304)
408 TIGR01108 oadA oxaloacetate de 76.1 46 0.00099 35.5 12.9 101 79-188 91-198 (582)
409 TIGR00538 hemN oxygen-independ 76.0 42 0.0009 34.4 12.3 113 78-194 83-216 (455)
410 PF02679 ComA: (2R)-phospho-3- 75.7 7.9 0.00017 36.5 6.3 78 79-162 84-169 (244)
411 TIGR01463 mtaA_cmuA methyltran 75.6 27 0.00059 34.0 10.5 74 81-158 182-260 (340)
412 PRK05265 pyridoxine 5'-phospha 75.6 26 0.00056 33.0 9.6 185 16-215 11-210 (239)
413 cd04732 HisA HisA. Phosphorib 75.5 12 0.00027 34.2 7.6 74 82-164 32-106 (234)
414 PF00478 IMPDH: IMP dehydrogen 75.5 12 0.00026 37.3 7.8 78 82-163 160-243 (352)
415 PF05853 DUF849: Prokaryotic p 75.5 4 8.8E-05 39.0 4.5 123 74-207 55-191 (272)
416 cd07942 DRE_TIM_LeuA Mycobacte 75.5 21 0.00045 34.4 9.4 108 65-177 140-262 (284)
417 cd02072 Glm_B12_BD B12 binding 75.5 39 0.00084 28.7 9.9 74 81-158 39-113 (128)
418 cd00003 PNPsynthase Pyridoxine 75.4 28 0.00061 32.6 9.8 186 16-216 8-209 (234)
419 TIGR01306 GMP_reduct_2 guanosi 75.3 16 0.00035 35.9 8.6 75 81-164 147-231 (321)
420 PF13353 Fer4_12: 4Fe-4S singl 75.3 9 0.0002 31.8 6.1 84 73-164 33-120 (139)
421 PRK09058 coproporphyrinogen II 75.2 47 0.001 34.0 12.5 99 92-194 114-228 (449)
422 PRK00115 hemE uroporphyrinogen 75.2 15 0.00033 36.0 8.6 73 81-160 188-267 (346)
423 TIGR00973 leuA_bact 2-isopropy 75.1 30 0.00065 36.0 11.1 14 294-307 330-343 (494)
424 PRK02615 thiamine-phosphate py 75.1 32 0.00069 34.2 10.8 67 131-208 242-313 (347)
425 cd04735 OYE_like_4_FMN Old yel 75.1 7.3 0.00016 38.6 6.3 91 73-167 229-320 (353)
426 cd06303 PBP1_LuxPQ_Quorum_Sens 75.0 71 0.0015 29.6 14.4 91 59-160 28-137 (280)
427 PF10566 Glyco_hydro_97: Glyco 74.9 13 0.00029 35.6 7.8 102 75-182 28-145 (273)
428 cd00717 URO-D Uroporphyrinogen 74.9 16 0.00035 35.5 8.7 73 81-160 179-258 (335)
429 cd07896 Adenylation_kDNA_ligas 74.8 12 0.00026 32.8 7.1 57 106-162 100-157 (174)
430 PRK11815 tRNA-dihydrouridine s 74.8 38 0.00082 33.3 11.2 85 75-161 73-172 (333)
431 PRK13404 dihydropyrimidinase; 74.7 24 0.00051 36.4 10.2 52 80-135 136-187 (477)
432 cd02067 B12-binding B12 bindin 74.6 33 0.00072 27.8 9.3 68 82-158 40-107 (119)
433 TIGR02666 moaA molybdenum cofa 74.5 23 0.00051 34.4 9.7 107 72-187 39-158 (334)
434 PTZ00314 inosine-5'-monophosph 74.5 12 0.00027 38.9 8.0 67 82-159 243-309 (495)
435 PRK12738 kbaY tagatose-bisphos 74.4 41 0.00089 32.5 11.0 124 76-209 81-224 (286)
436 PRK06801 hypothetical protein; 74.4 46 0.001 32.1 11.4 122 76-209 81-225 (286)
437 TIGR01463 mtaA_cmuA methyltran 74.3 88 0.0019 30.4 14.3 44 139-182 179-228 (340)
438 PRK08599 coproporphyrinogen II 74.3 37 0.0008 33.7 11.2 87 92-182 51-148 (377)
439 TIGR00521 coaBC_dfp phosphopan 74.2 67 0.0015 32.4 13.0 145 76-221 126-327 (390)
440 PLN02274 inosine-5'-monophosph 74.2 32 0.0007 35.9 11.0 140 83-239 251-408 (505)
441 PRK07315 fructose-bisphosphate 74.1 45 0.00098 32.3 11.3 119 76-209 84-224 (293)
442 PF02548 Pantoate_transf: Keto 74.1 29 0.00064 33.1 9.8 111 61-189 15-138 (261)
443 TIGR00259 thylakoid_BtpA membr 74.0 48 0.001 31.6 11.2 88 80-180 158-253 (257)
444 cd04727 pdxS PdxS is a subunit 74.0 20 0.00044 34.5 8.7 62 115-182 184-247 (283)
445 cd06319 PBP1_ABC_sugar_binding 74.0 71 0.0015 29.1 12.7 26 77-102 40-65 (277)
446 cd04726 KGPDC_HPS 3-Keto-L-gul 74.0 64 0.0014 28.6 16.4 165 75-260 9-189 (202)
447 TIGR01362 KDO8P_synth 3-deoxy- 73.9 29 0.00063 33.0 9.6 82 75-161 126-222 (258)
448 cd07947 DRE_TIM_Re_CS Clostrid 73.8 45 0.00098 32.0 11.2 71 85-155 80-164 (279)
449 TIGR00284 dihydropteroate synt 73.7 26 0.00056 36.6 10.1 105 64-173 253-365 (499)
450 cd05015 SIS_PGI_1 Phosphogluco 73.5 15 0.00032 31.9 7.2 85 77-161 3-117 (158)
451 PRK09492 treR trehalose repres 73.4 82 0.0018 29.6 14.3 80 78-160 160-239 (315)
452 cd00429 RPE Ribulose-5-phospha 73.4 29 0.00063 30.9 9.4 67 100-174 139-208 (211)
453 COG0646 MetH Methionine syntha 73.1 87 0.0019 30.5 12.7 114 79-205 143-277 (311)
454 PRK15108 biotin synthase; Prov 73.1 38 0.00083 33.4 10.8 76 76-159 76-152 (345)
455 PRK08649 inosine 5-monophospha 73.1 1E+02 0.0023 30.8 13.9 79 127-218 131-215 (368)
456 PRK08508 biotin synthase; Prov 73.1 28 0.0006 33.3 9.6 101 77-182 73-178 (279)
457 cd04728 ThiG Thiazole synthase 73.1 86 0.0019 29.7 12.7 177 80-270 21-220 (248)
458 PRK09249 coproporphyrinogen II 73.0 52 0.0011 33.7 12.2 99 92-194 102-216 (453)
459 TIGR03551 F420_cofH 7,8-dideme 73.0 17 0.00038 35.7 8.4 110 75-189 99-234 (343)
460 PF02126 PTE: Phosphotriestera 73.0 6.7 0.00014 38.3 5.4 108 75-191 99-215 (308)
461 PRK13533 7-cyano-7-deazaguanin 72.8 28 0.00061 36.2 10.1 83 73-162 165-249 (487)
462 COG0042 tRNA-dihydrouridine sy 72.6 17 0.00037 35.7 8.1 81 83-168 156-236 (323)
463 PF02581 TMP-TENI: Thiamine mo 72.6 20 0.00044 31.7 8.0 94 89-208 69-168 (180)
464 TIGR02109 PQQ_syn_pqqE coenzym 72.5 14 0.00031 36.2 7.7 80 73-161 34-113 (358)
465 PRK12595 bifunctional 3-deoxy- 72.4 20 0.00043 35.8 8.7 82 76-160 236-322 (360)
466 PF01081 Aldolase: KDPG and KH 72.4 13 0.00028 33.9 6.7 158 76-265 17-183 (196)
467 PRK08208 coproporphyrinogen II 72.4 52 0.0011 33.4 11.9 112 79-194 74-206 (430)
468 cd03332 LMO_FMN L-Lactate 2-mo 72.2 1.1E+02 0.0025 30.7 14.6 23 77-99 149-171 (383)
469 cd00502 DHQase_I Type I 3-dehy 71.9 80 0.0017 28.9 13.6 106 75-191 72-183 (225)
470 PRK15447 putative protease; Pr 71.9 34 0.00074 33.1 10.0 74 81-160 17-95 (301)
471 cd03329 MR_like_4 Mandelate ra 71.9 46 0.00099 33.0 11.2 127 76-219 142-274 (368)
472 PRK08005 epimerase; Validated 71.9 82 0.0018 29.0 12.7 164 75-261 9-195 (210)
473 PRK14040 oxaloacetate decarbox 71.9 1.1E+02 0.0023 32.8 14.4 102 79-188 97-204 (593)
474 cd02930 DCR_FMN 2,4-dienoyl-Co 71.9 55 0.0012 32.3 11.7 108 43-161 7-158 (353)
475 PRK05985 cytosine deaminase; P 71.8 80 0.0017 31.3 12.9 18 223-240 280-297 (391)
476 PLN02951 Molybderin biosynthes 71.5 40 0.00086 33.7 10.6 79 74-161 88-167 (373)
477 cd02922 FCB2_FMN Flavocytochro 71.5 1.1E+02 0.0024 30.3 15.6 73 77-161 129-242 (344)
478 cd00740 MeTr MeTr subgroup of 71.4 93 0.002 29.4 14.7 105 75-190 22-127 (252)
479 cd06285 PBP1_LacI_like_7 Ligan 71.3 60 0.0013 29.5 11.2 93 77-181 40-141 (265)
480 TIGR00693 thiE thiamine-phosph 71.3 27 0.00058 31.0 8.6 108 84-215 65-177 (196)
481 PRK14041 oxaloacetate decarbox 71.3 1E+02 0.0022 32.0 13.7 100 79-188 95-202 (467)
482 COG2100 Predicted Fe-S oxidore 71.2 13 0.00029 36.6 6.7 137 76-216 172-331 (414)
483 PRK04302 triosephosphate isome 71.0 64 0.0014 29.6 11.2 65 108-177 155-219 (223)
484 TIGR00970 leuA_yeast 2-isoprop 70.7 24 0.00052 37.4 9.2 107 68-177 171-290 (564)
485 TIGR01501 MthylAspMutase methy 70.6 67 0.0015 27.4 11.6 91 81-180 41-132 (134)
486 cd00530 PTE Phosphotriesterase 70.6 91 0.002 29.4 12.6 31 73-103 25-56 (293)
487 PRK12999 pyruvate carboxylase; 70.6 46 0.00099 38.4 12.0 82 75-162 687-768 (1146)
488 PRK05628 coproporphyrinogen II 70.5 56 0.0012 32.4 11.5 113 78-194 39-173 (375)
489 TIGR02634 xylF D-xylose ABC tr 70.4 45 0.00098 31.6 10.4 78 109-191 9-88 (302)
490 TIGR01464 hemE uroporphyrinoge 70.4 25 0.00054 34.3 8.8 72 82-160 183-261 (338)
491 COG0134 TrpC Indole-3-glycerol 70.3 14 0.00031 35.0 6.7 63 124-190 42-115 (254)
492 cd07898 Adenylation_DNA_ligase 70.1 14 0.00031 33.2 6.5 59 104-162 124-182 (201)
493 PRK00208 thiG thiazole synthas 70.0 1E+02 0.0022 29.3 13.2 176 80-270 22-220 (250)
494 PRK05301 pyrroloquinoline quin 70.0 19 0.00042 35.6 8.1 80 73-161 43-122 (378)
495 PF03932 CutC: CutC family; I 69.9 15 0.00031 33.7 6.5 80 76-161 69-148 (201)
496 cd00465 URO-D_CIMS_like The UR 69.9 35 0.00076 32.4 9.6 77 79-159 144-227 (306)
497 PRK06843 inosine 5-monophospha 69.7 30 0.00066 35.1 9.3 77 84-165 207-290 (404)
498 cd02911 arch_FMN Archeal FMN-b 69.7 29 0.00064 32.3 8.7 69 80-162 153-222 (233)
499 PRK07807 inosine 5-monophospha 69.7 26 0.00056 36.4 9.0 144 81-240 228-389 (479)
500 TIGR01858 tag_bisphos_ald clas 69.7 51 0.0011 31.8 10.5 124 76-209 79-222 (282)
No 1
>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=3.1e-67 Score=505.02 Aligned_cols=278 Identities=40% Similarity=0.664 Sum_probs=259.7
Q ss_pred ccCCceEEeeecCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCC
Q 018253 57 IKALRLITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGS 136 (359)
Q Consensus 57 ~~~~Gi~~al~TPF~~dg~ID~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~ 136 (359)
+++.|++++++|||++||+||+++++++++||++.|++||+++|||||+++||.+||+++++.++++++||+|||+|+|+
T Consensus 3 ~~~~Gvi~a~vTPF~~dg~vD~~a~~~lv~~li~~Gv~gi~~~GttGE~~~Ls~eEr~~v~~~~v~~~~grvpviaG~g~ 82 (299)
T COG0329 3 AKFKGVIPALVTPFDEDGSVDEEALRRLVEFLIAAGVDGLVVLGTTGESPTLTLEERKEVLEAVVEAVGGRVPVIAGVGS 82 (299)
T ss_pred cccCcceeccccCCCCCCCcCHHHHHHHHHHHHHcCCCEEEECCCCccchhcCHHHHHHHHHHHHHHHCCCCcEEEecCC
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhCCCCEEEEcCCCCCCCCHHHHHHHHHHHHhc--CCeEEEeCCCCCCCCCCHHHHHHHhcCCCeEE
Q 018253 137 NSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSM--GPTIIYNVPSRTGQDIPPRVIHTMAQSPNLAG 214 (359)
Q Consensus 137 ~st~~ai~la~~a~~~Gadav~v~pP~y~~~s~~~l~~yf~~Ia~a--~PiiiYn~P~~tg~~ls~e~l~~La~~pnivG 214 (359)
++|+++++++++|+++|+|++|++||||++++|+++++||++|+++ +|+|+||+|.+||++++++++.+|+++|||+|
T Consensus 83 ~~t~eai~lak~a~~~Gad~il~v~PyY~k~~~~gl~~hf~~ia~a~~lPvilYN~P~~tg~~l~~e~i~~la~~~nivg 162 (299)
T COG0329 83 NSTAEAIELAKHAEKLGADGILVVPPYYNKPSQEGLYAHFKAIAEAVDLPVILYNIPSRTGVDLSPETIARLAEHPNIVG 162 (299)
T ss_pred CcHHHHHHHHHHHHhcCCCEEEEeCCCCcCCChHHHHHHHHHHHHhcCCCEEEEeCccccCCCCCHHHHHHHhcCCCEEE
Confidence 9999999999999999999999999999999999999999999997 79999999999999999999999999999999
Q ss_pred EeccCchh-hHh---hhhCC-ceEEEecCCchhhhhhhhcCCceeecccccccHHHHHHHHH---cCC---cHHHHHHHH
Q 018253 215 VKECVGND-RVE---HYTGN-GIVVWSGNDDQCHDARWNHGATGVISVTSNLVPGMMRELMF---GGK---NPSLNTKLF 283 (359)
Q Consensus 215 iK~ss~d~-~l~---~~~~~-~~~v~~G~d~~~~~~~l~~Ga~G~is~~an~~P~l~~~l~~---ag~---a~~l~~~l~ 283 (359)
+||+++|. ++. +...+ +|.+|+|.|+++++. +.+|++|+||+++|++|++++++|+ +|+ ++++|+++.
T Consensus 163 iKd~~gd~~~~~~~~~~~~~~~f~v~~G~d~~~~~~-~~~G~~G~is~~~N~~p~~~~~l~~~~~~g~~~~A~~l~~~l~ 241 (299)
T COG0329 163 VKDSSGDLDRLEEIIAALGDRDFIVLSGDDELALPA-LLLGADGVISVTANVAPELAVELYRAAKAGDIEEARELQDRLL 241 (299)
T ss_pred EEeCCcCHHHHHHHHHhcCccCeeEEeCchHHHHHH-HhCCCCeEEecccccCHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 99999994 333 33445 799999999999876 7799999999999999999999996 464 789999999
Q ss_pred HHHHHHhcCCChHHHHHHHHHcCCCCC-CCCCCCCCCCHHHHHH-HHHHHHHcC
Q 018253 284 PLIEWLFQEPNPIPLNTALAQLGVVRP-VFRLPYVPLPQEKRAE-FVNLVNQIG 335 (359)
Q Consensus 284 ~l~~~l~~~~~~~~~K~al~~~G~~~g-~~R~Pl~~l~~e~~~~-i~~~l~~lg 335 (359)
|++++++..+++..+|++|+++|+..+ .+|+|+.++++++++. ++++++..+
T Consensus 242 ~l~~~~~~~~~~~~iK~~l~~~G~~~~~~~R~Pl~~l~~~~~~~~~~~~~~~~~ 295 (299)
T COG0329 242 PLIRLLFREGNPIPIKAALRLLGLIDGGTVRLPLVPLSEEEREKVLEAALAALG 295 (299)
T ss_pred HHHHHHhcCCCcHHHHHHHHHCCCCCCCcCCCCCCCCCHHHHHHHHHHHHHHhh
Confidence 999999999999999999999998765 5999999999998888 777777654
No 2
>PLN02417 dihydrodipicolinate synthase
Probab=100.00 E-value=4.2e-67 Score=500.52 Aligned_cols=279 Identities=82% Similarity=1.343 Sum_probs=264.2
Q ss_pred cCCceEEeeecCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCC
Q 018253 58 KALRLITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSN 137 (359)
Q Consensus 58 ~~~Gi~~al~TPF~~dg~ID~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~ 137 (359)
|.+|++++++|||++||+||+++++++++|+++.|++||+++|||||+++||.+||+++++.+++++++|+|||+|++++
T Consensus 1 ~~~Gv~~a~~TPf~~~g~iD~~~~~~~i~~l~~~Gv~Gi~~~GstGE~~~ls~~Er~~~~~~~~~~~~~~~pvi~gv~~~ 80 (280)
T PLN02417 1 KKLRLITAIKTPYLPDGRFDLEAYDSLVNMQIENGAEGLIVGGTTGEGQLMSWDEHIMLIGHTVNCFGGKIKVIGNTGSN 80 (280)
T ss_pred CCCceeeeeeCCcCCCCCcCHHHHHHHHHHHHHcCCCEEEECccCcchhhCCHHHHHHHHHHHHHHhCCCCcEEEECCCc
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhCCCCEEEEcCCCCCCCCHHHHHHHHHHHHhcCCeEEEeCCCCCCCCCCHHHHHHHhcCCCeEEEec
Q 018253 138 STREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSMGPTIIYNVPSRTGQDIPPRVIHTMAQSPNLAGVKE 217 (359)
Q Consensus 138 st~~ai~la~~a~~~Gadav~v~pP~y~~~s~~~l~~yf~~Ia~a~PiiiYn~P~~tg~~ls~e~l~~La~~pnivGiK~ 217 (359)
+|+++++++++|+++|||++|++||||++++++++++||++|+++.|+++||+|++||++++++++++|+++|||+|||+
T Consensus 81 ~t~~~i~~a~~a~~~Gadav~~~~P~y~~~~~~~i~~~f~~va~~~pi~lYn~P~~tg~~l~~~~l~~l~~~pni~giKd 160 (280)
T PLN02417 81 STREAIHATEQGFAVGMHAALHINPYYGKTSQEGLIKHFETVLDMGPTIIYNVPGRTGQDIPPEVIFKIAQHPNFAGVKE 160 (280)
T ss_pred cHHHHHHHHHHHHHcCCCEEEEcCCccCCCCHHHHHHHHHHHHhhCCEEEEEChhHhCcCCCHHHHHHHhcCCCEEEEEe
Confidence 99999999999999999999999999999999999999999998669999999999999999999999999999999999
Q ss_pred cCchhhHhhhhCCceEEEecCCchhhhhhhhcCCceeecccccccHHHHHHHHHcCCcHHHHHHHHHHHHHHhcCCChHH
Q 018253 218 CVGNDRVEHYTGNGIVVWSGNDDQCHDARWNHGATGVISVTSNLVPGMMRELMFGGKNPSLNTKLFPLIEWLFQEPNPIP 297 (359)
Q Consensus 218 ss~d~~l~~~~~~~~~v~~G~d~~~~~~~l~~Ga~G~is~~an~~P~l~~~l~~ag~a~~l~~~l~~l~~~l~~~~~~~~ 297 (359)
+++|.++.+...++|.||+|.|+.++...+.+|++|++|+++|++|+.++++|+++++.++|+++.+++++++..+++.+
T Consensus 161 ss~~~~~~~~~~~~~~v~~G~d~~~~~~~l~~Ga~G~is~~~n~~P~~~~~l~~a~~~~~l~~~l~~l~~~~~~~~~~~~ 240 (280)
T PLN02417 161 CTGNDRVKQYTEKGILLWSGNDDECHDARWDYGADGVISVTSNLVPGLMHKLMFAGKNKELNDKLLPLMDWLFCEPNPIG 240 (280)
T ss_pred CCCcHHHHHHhcCCeEEEEcccHHhhHHHHhCCCCEEEecHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcHH
Confidence 99985555555679999999999988754788999999999999999999999988778999999999998877777778
Q ss_pred HHHHHHHcCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCc
Q 018253 298 LNTALAQLGVVRPVFRLPYVPLPQEKRAEFVNLVNQIGR 336 (359)
Q Consensus 298 ~K~al~~~G~~~g~~R~Pl~~l~~e~~~~i~~~l~~lgl 336 (359)
+|++|+++|++.+.+|+|+.+++++++++|+++++++++
T Consensus 241 ~K~al~~~G~~~g~~R~Pl~~l~~~~~~~l~~~l~~~~~ 279 (280)
T PLN02417 241 LNTALAQLGLIRPVFRLPYVPLDLAKRAEFVALVKAIGR 279 (280)
T ss_pred HHHHHHHcCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 999999999988888999999999999999999999875
No 3
>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism.
Probab=100.00 E-value=6.7e-66 Score=495.32 Aligned_cols=277 Identities=28% Similarity=0.480 Sum_probs=259.5
Q ss_pred CCceEEeeecCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCCC
Q 018253 59 ALRLITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNS 138 (359)
Q Consensus 59 ~~Gi~~al~TPF~~dg~ID~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~s 138 (359)
++|++++++|||++||+||+++++++++|+++.||+||+++|||||+++||.+||+++++.+++.++||+|||+||++++
T Consensus 1 ~~Gv~~a~~TPf~~dg~iD~~~l~~lv~~~~~~Gv~gi~v~GstGE~~~Ls~~Er~~l~~~~~~~~~g~~pvi~gv~~~~ 80 (294)
T TIGR02313 1 FRGSIAPLITPFKRNGDIDEEALRELIEFQIEGGSHAISVGGTSGEPGSLTLEERKQAIENAIDQIAGRIPFAPGTGALN 80 (294)
T ss_pred CCceeeeeeCCcCCCCCcCHHHHHHHHHHHHHcCCCEEEECccCcccccCCHHHHHHHHHHHHHHhCCCCcEEEECCcch
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCEEEEcCCCCCCCCHHHHHHHHHHHHhc---CCeEEEeCCCCCCCCCCHHHHHHHh-cCCCeEE
Q 018253 139 TREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSM---GPTIIYNVPSRTGQDIPPRVIHTMA-QSPNLAG 214 (359)
Q Consensus 139 t~~ai~la~~a~~~Gadav~v~pP~y~~~s~~~l~~yf~~Ia~a---~PiiiYn~P~~tg~~ls~e~l~~La-~~pnivG 214 (359)
|+++++++|+|+++|||++|++||||++++++++++||++|+++ +||++||+|.+||++++++++.+|+ ++|||+|
T Consensus 81 t~~ai~~a~~A~~~Gad~v~v~pP~y~~~~~~~l~~~f~~ia~a~~~lpv~iYn~P~~tg~~l~~~~l~~L~~~~pnv~g 160 (294)
T TIGR02313 81 HDETLELTKFAEEAGADAAMVIVPYYNKPNQEALYDHFAEVADAVPDFPIIIYNIPGRAAQEIAPKTMARLRKDCPNIVG 160 (294)
T ss_pred HHHHHHHHHHHHHcCCCEEEEcCccCCCCCHHHHHHHHHHHHHhccCCCEEEEeCchhcCcCCCHHHHHHHHhhCCCEEE
Confidence 99999999999999999999999999999999999999999985 6999999999999999999999999 6999999
Q ss_pred EeccCchh-h---HhhhhCCceEEEecCCchhhhhhhhcCCceeecccccccHHHHHHHHH---cCC---cHHHHHHHHH
Q 018253 215 VKECVGND-R---VEHYTGNGIVVWSGNDDQCHDARWNHGATGVISVTSNLVPGMMRELMF---GGK---NPSLNTKLFP 284 (359)
Q Consensus 215 iK~ss~d~-~---l~~~~~~~~~v~~G~d~~~~~~~l~~Ga~G~is~~an~~P~l~~~l~~---ag~---a~~l~~~l~~ 284 (359)
+|++++|. + +.+..+++|.+|+|.|+.+++. +.+|++|++|+++|++|++++++|+ +|+ ++++|.++.+
T Consensus 161 iK~ss~d~~~~~~~~~~~~~~~~v~~G~d~~~~~~-l~~Ga~G~is~~~n~~P~~~~~l~~~~~~gd~~~A~~l~~~~~~ 239 (294)
T TIGR02313 161 AKESNKDFEHLNHLFLEAGRDFLLFCGIELLCLPM-LAIGAAGSIAATANVEPKEVAELCEAAEAGDIKGAQDLHFELLE 239 (294)
T ss_pred EEeCCCCHHHHHHHHHhcCCCeEEEEcchHHHHHH-HHCCCCEEEecHHhhCHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 99999984 3 3333467999999999988875 8999999999999999999999997 465 6789999999
Q ss_pred HHHHHhcCCChHHHHHHHHHcCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCc
Q 018253 285 LIEWLFQEPNPIPLNTALAQLGVVRPVFRLPYVPLPQEKRAEFVNLVNQIGR 336 (359)
Q Consensus 285 l~~~l~~~~~~~~~K~al~~~G~~~g~~R~Pl~~l~~e~~~~i~~~l~~lgl 336 (359)
+++.++..+++..+|++|+++|+..+.+|+|+.+++++++++|+++++++++
T Consensus 240 ~~~~~~~~~~~~~~K~al~~~G~~~g~~R~Pl~~l~~~~~~~l~~~l~~~~~ 291 (294)
T TIGR02313 240 ANDAIFKDTNPAPLKAALGMMGLIEKELRPPLGLPSDALEEEIRDMAEKYGK 291 (294)
T ss_pred HHHHHccCCCcHHHHHHHHHcCCCCCCcCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 9997777777778999999999988889999999999999999999999875
No 4
>PRK04147 N-acetylneuraminate lyase; Provisional
Probab=100.00 E-value=1.1e-64 Score=486.64 Aligned_cols=277 Identities=25% Similarity=0.383 Sum_probs=258.8
Q ss_pred cCCceEEeeecCCCCCCCCCHHHHHHHHHHHHH-CCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCC
Q 018253 58 KALRLITAIKTPYLPDGRFDLEAYDDLVNMQIV-NGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGS 136 (359)
Q Consensus 58 ~~~Gi~~al~TPF~~dg~ID~~~l~~li~~li~-~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~ 136 (359)
+++||+++++|||++||+||+++++++++++++ .|++||+++|||||+++||.+||+++++.+++++++|+|||+|+++
T Consensus 3 ~~~Gv~~a~~TPf~~dg~iD~~~~~~li~~l~~~~Gv~gi~v~GstGE~~~Ls~eEr~~~~~~~~~~~~~~~~viagvg~ 82 (293)
T PRK04147 3 NLKGVYAALLTPFDEDGQIDEQGLRRLVRFNIEKQGIDGLYVGGSTGEAFLLSTEEKKQVLEIVAEEAKGKVKLIAQVGS 82 (293)
T ss_pred CCCceeeeeECcCCCCCCcCHHHHHHHHHHHHhcCCCCEEEECCCccccccCCHHHHHHHHHHHHHHhCCCCCEEecCCC
Confidence 478999999999999999999999999999999 9999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhCCCCEEEEcCCCCCCCCHHHHHHHHHHHHhc--CCeEEEeCCCCCCCCCCHHHHHHHhcCCCeEE
Q 018253 137 NSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSM--GPTIIYNVPSRTGQDIPPRVIHTMAQSPNLAG 214 (359)
Q Consensus 137 ~st~~ai~la~~a~~~Gadav~v~pP~y~~~s~~~l~~yf~~Ia~a--~PiiiYn~P~~tg~~ls~e~l~~La~~pnivG 214 (359)
++|+++++++++|+++|||+++++||||++++++++++||++|+++ +||++||+|.+||++++++++.+|+++|||+|
T Consensus 83 ~~t~~ai~~a~~a~~~Gad~v~v~~P~y~~~~~~~l~~~f~~va~a~~lPv~iYn~P~~tg~~l~~~~l~~L~~~pnvvg 162 (293)
T PRK04147 83 VNTAEAQELAKYATELGYDAISAVTPFYYPFSFEEICDYYREIIDSADNPMIVYNIPALTGVNLSLDQFNELFTLPKVIG 162 (293)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEeCCcCCCCCHHHHHHHHHHHHHhCCCCEEEEeCchhhccCCCHHHHHHHhcCCCEEE
Confidence 9999999999999999999999999999999999999999999997 79999999999999999999999999999999
Q ss_pred EeccCchh-hHhhh--hCCceEEEecCCchhhhhhhhcCCceeecccccccHHHHHHHHH---cCC---cHHHHHHHHHH
Q 018253 215 VKECVGND-RVEHY--TGNGIVVWSGNDDQCHDARWNHGATGVISVTSNLVPGMMRELMF---GGK---NPSLNTKLFPL 285 (359)
Q Consensus 215 iK~ss~d~-~l~~~--~~~~~~v~~G~d~~~~~~~l~~Ga~G~is~~an~~P~l~~~l~~---ag~---a~~l~~~l~~l 285 (359)
||++++|. ++.++ ..++|.+|+|.|+.++.. +..|++|++|+++|++|+.++++|+ +|+ ++++|+++.++
T Consensus 163 iK~s~~d~~~~~~~~~~~~~~~v~~G~d~~~~~~-l~~G~~G~is~~~n~~p~~~~~l~~~~~~gd~~~a~~l~~~~~~~ 241 (293)
T PRK04147 163 VKQTAGDLYQLERIRKAFPDKLIYNGFDEMFASG-LLAGADGAIGSTYNVNGWRARQIFEAAKAGDIQEAQELQHECNDV 241 (293)
T ss_pred EEeCCCCHHHHHHHHHhCCCCEEEEeehHHHHHH-HHcCCCEEEechhhhCHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 99999984 33222 235789999999998765 8999999999999999999999996 464 67899999999
Q ss_pred HHHHhcCCChHHHHHHHHHcCCCCCCCCCCCCCCCHHHHHHHHHHHHHcC
Q 018253 286 IEWLFQEPNPIPLNTALAQLGVVRPVFRLPYVPLPQEKRAEFVNLVNQIG 335 (359)
Q Consensus 286 ~~~l~~~~~~~~~K~al~~~G~~~g~~R~Pl~~l~~e~~~~i~~~l~~lg 335 (359)
++.++..+++..+|++|+++|+..+.+|+|+.+++++++++|++++++++
T Consensus 242 ~~~~~~~~~~~~~K~~l~~~G~~~g~~R~Pl~~l~~~~~~~i~~~l~~~~ 291 (293)
T PRK04147 242 IDLLIKNGVYPGLKEILHYMGVDAGLCRKPFKPVDEKYLPALKALAAKYL 291 (293)
T ss_pred HHHHhhcCCcHHHHHHHHHcCCCCCCcCCCCCCCCHHHHHHHHHHHHHHh
Confidence 99877777778899999999998889999999999999999999999875
No 5
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....
Probab=100.00 E-value=4.6e-65 Score=488.21 Aligned_cols=277 Identities=33% Similarity=0.524 Sum_probs=252.6
Q ss_pred cCCceEEeeecCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCC
Q 018253 58 KALRLITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSN 137 (359)
Q Consensus 58 ~~~Gi~~al~TPF~~dg~ID~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~ 137 (359)
+++||+++++|||++||+||++++++++++++++|++|++++|||||+++||.+||+++++.+++++++|+|||+||++.
T Consensus 1 ~~~Gi~~~~~TPf~~dg~id~~~~~~~i~~l~~~Gv~gl~~~GstGE~~~Lt~~Er~~l~~~~~~~~~~~~~vi~gv~~~ 80 (289)
T PF00701_consen 1 MLKGIFPALITPFNADGSIDEDALKRLIDFLIEAGVDGLVVLGSTGEFYSLTDEERKELLEIVVEAAAGRVPVIAGVGAN 80 (289)
T ss_dssp GGSEEEEEE---BETTSSB-HHHHHHHHHHHHHTTSSEEEESSTTTTGGGS-HHHHHHHHHHHHHHHTTSSEEEEEEESS
T ss_pred CCCCeeeeeeCCCCCCcCcCHHHHHHHHHHHHHcCCCEEEECCCCcccccCCHHHHHHHHHHHHHHccCceEEEecCcch
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhCCCCEEEEcCCCCCCCCHHHHHHHHHHHHhc--CCeEEEeCCCCCCCCCCHHHHHHHhcCCCeEEE
Q 018253 138 STREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSM--GPTIIYNVPSRTGQDIPPRVIHTMAQSPNLAGV 215 (359)
Q Consensus 138 st~~ai~la~~a~~~Gadav~v~pP~y~~~s~~~l~~yf~~Ia~a--~PiiiYn~P~~tg~~ls~e~l~~La~~pnivGi 215 (359)
||+++++++++|+++|||++|++||||+++|++++++||++|+++ .||++||+|.+||.++|++++.+|+++|||+|+
T Consensus 81 st~~~i~~a~~a~~~Gad~v~v~~P~~~~~s~~~l~~y~~~ia~~~~~pi~iYn~P~~tg~~ls~~~l~~L~~~~nv~gi 160 (289)
T PF00701_consen 81 STEEAIELARHAQDAGADAVLVIPPYYFKPSQEELIDYFRAIADATDLPIIIYNNPARTGNDLSPETLARLAKIPNVVGI 160 (289)
T ss_dssp SHHHHHHHHHHHHHTT-SEEEEEESTSSSCCHHHHHHHHHHHHHHSSSEEEEEEBHHHHSSTSHHHHHHHHHTSTTEEEE
T ss_pred hHHHHHHHHHHHhhcCceEEEEeccccccchhhHHHHHHHHHHhhcCCCEEEEECCCccccCCCHHHHHHHhcCCcEEEE
Confidence 999999999999999999999999999999999999999999987 699999999999999999999999999999999
Q ss_pred eccCchh-h---HhhhhCCceEEEecCCchhhhhhhhcCCceeecccccccHHHHHHHHH---cCC---cHHHHHHHHHH
Q 018253 216 KECVGND-R---VEHYTGNGIVVWSGNDDQCHDARWNHGATGVISVTSNLVPGMMRELMF---GGK---NPSLNTKLFPL 285 (359)
Q Consensus 216 K~ss~d~-~---l~~~~~~~~~v~~G~d~~~~~~~l~~Ga~G~is~~an~~P~l~~~l~~---ag~---a~~l~~~l~~l 285 (359)
|++++|. + +.+..+++|.+|+|.|.+++. .+..|++|++++++|++|+.++++|+ +|+ +.++|+++.++
T Consensus 161 K~s~~~~~~~~~~~~~~~~~~~v~~G~d~~~~~-~l~~G~~G~is~~~n~~P~~~~~i~~~~~~Gd~~~A~~l~~~l~~~ 239 (289)
T PF00701_consen 161 KDSSGDLERLIQLLRAVGPDFSVFCGDDELLLP-ALAAGADGFISGLANVFPELIVEIYDAFQAGDWEEARELQQRLLPL 239 (289)
T ss_dssp EESSSBHHHHHHHHHHSSTTSEEEESSGGGHHH-HHHTTSSEEEESGGGTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred EcCchhHHHHHHHhhhcccCeeeeccccccccc-cccccCCEEEEcccccChHHHHHHHHHHHcCcHHHHHHHHHHHhHH
Confidence 9999984 3 334457899999999888775 58999999999999999999999996 475 67899999999
Q ss_pred HHHHhcCCChHHHHHHHHHcCCCCCCCCCCCCCCCHHHHHHHHHHHHHcC
Q 018253 286 IEWLFQEPNPIPLNTALAQLGVVRPVFRLPYVPLPQEKRAEFVNLVNQIG 335 (359)
Q Consensus 286 ~~~l~~~~~~~~~K~al~~~G~~~g~~R~Pl~~l~~e~~~~i~~~l~~lg 335 (359)
++.+...+++.++|++|+++|+..+.+|+|+.+++++++++|+++|+++|
T Consensus 240 ~~~~~~~~~~~~~K~~l~~~G~~~g~~R~Pl~~l~~~~~~~l~~~l~~~g 289 (289)
T PF00701_consen 240 REALFSGGNIAAIKYALELRGLIAGPVRPPLLPLSDEEKEELKEILKEAG 289 (289)
T ss_dssp HHHHTSSSTTHHHHHHHHHTTSSSSB--TTS-SS-HHHHHHHHHHHHHTT
T ss_pred HHHHHccCCHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHhCc
Confidence 99998888899999999999999888999999999999999999999986
No 6
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=100.00 E-value=3.8e-64 Score=481.20 Aligned_cols=273 Identities=40% Similarity=0.656 Sum_probs=256.0
Q ss_pred ceEEeeecCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCCCHH
Q 018253 61 RLITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTR 140 (359)
Q Consensus 61 Gi~~al~TPF~~dg~ID~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~st~ 140 (359)
||+++++|||++||+||+++++++++|+++.||+|++++|||||+++||.+||+++++.+++.+++|+||++|+++.|++
T Consensus 1 Gv~~a~~TPf~~~g~iD~~~~~~~i~~l~~~Gv~Gi~~~GstGE~~~Ls~~Er~~~~~~~~~~~~~~~~vi~gv~~~s~~ 80 (285)
T TIGR00674 1 GVITALITPFKEDGSVDFAALEKLIDFQIENGTDAIVVVGTTGESPTLSHEEHKKVIEFVVDLVNGRVPVIAGTGSNATE 80 (285)
T ss_pred CccCceeCCcCCCCCcCHHHHHHHHHHHHHcCCCEEEECccCcccccCCHHHHHHHHHHHHHHhCCCCeEEEeCCCccHH
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCCEEEEcCCCCCCCCHHHHHHHHHHHHhc--CCeEEEeCCCCCCCCCCHHHHHHHhcCCCeEEEecc
Q 018253 141 EAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSM--GPTIIYNVPSRTGQDIPPRVIHTMAQSPNLAGVKEC 218 (359)
Q Consensus 141 ~ai~la~~a~~~Gadav~v~pP~y~~~s~~~l~~yf~~Ia~a--~PiiiYn~P~~tg~~ls~e~l~~La~~pnivGiK~s 218 (359)
++++++++|+++|+|++|++||+|++++++++++||++|+++ +||++||+|.+||++++++++++|+++|||+|+|++
T Consensus 81 ~~i~~a~~a~~~Gad~v~v~pP~y~~~~~~~i~~~~~~i~~~~~~pi~lYn~P~~tg~~l~~~~l~~L~~~~~v~giK~s 160 (285)
T TIGR00674 81 EAISLTKFAEDVGADGFLVVTPYYNKPTQEGLYQHFKAIAEEVDLPIILYNVPSRTGVSLYPETVKRLAEEPNIVAIKEA 160 (285)
T ss_pred HHHHHHHHHHHcCCCEEEEcCCcCCCCCHHHHHHHHHHHHhcCCCCEEEEECcHHhcCCCCHHHHHHHHcCCCEEEEEeC
Confidence 999999999999999999999999999999999999999997 799999999999999999999999999999999999
Q ss_pred Cchh-h---HhhhhCCceEEEecCCchhhhhhhhcCCceeecccccccHHHHHHHHH---cCC---cHHHHHHHHHHHHH
Q 018253 219 VGND-R---VEHYTGNGIVVWSGNDDQCHDARWNHGATGVISVTSNLVPGMMRELMF---GGK---NPSLNTKLFPLIEW 288 (359)
Q Consensus 219 s~d~-~---l~~~~~~~~~v~~G~d~~~~~~~l~~Ga~G~is~~an~~P~l~~~l~~---ag~---a~~l~~~l~~l~~~ 288 (359)
++|. + +.+..+++|.+|+|.|++++.. +.+|++|++++++|++|++++++|+ +|+ +.++|+++.+++++
T Consensus 161 ~~d~~~~~~l~~~~~~~~~v~~G~d~~~~~~-~~~G~~G~i~~~~~~~P~~~~~l~~a~~~gd~~~A~~lq~~l~~l~~~ 239 (285)
T TIGR00674 161 TGNLERISEIKAIAPDDFVVLSGDDALTLPM-MALGGKGVISVTANVAPKLMKEMVNNALEGDFAEAREIHQKLMPLHKA 239 (285)
T ss_pred CCCHHHHHHHHHhcCCCeEEEECchHHHHHH-HHcCCCEEEehHHHhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 9984 3 3334456899999999888865 8999999999999999999999996 465 67899999999998
Q ss_pred HhcCCChHHHHHHHHHcCCCCCCCCCCCCCCCHHHHHHHHHHHHHc
Q 018253 289 LFQEPNPIPLNTALAQLGVVRPVFRLPYVPLPQEKRAEFVNLVNQI 334 (359)
Q Consensus 289 l~~~~~~~~~K~al~~~G~~~g~~R~Pl~~l~~e~~~~i~~~l~~l 334 (359)
++..+++..+|++|+.+|++.|.+|+|+.+++++++++|+++++++
T Consensus 240 ~~~~~~~~~~K~~l~~~G~~~g~~R~P~~~l~~~~~~~l~~~l~~~ 285 (285)
T TIGR00674 240 LFIETNPIPVKTALALLGLIEGELRLPLTELSEEHRNKLRDVLKDL 285 (285)
T ss_pred HhccCCcHHHHHHHHHcCCCCCCCCCCCCCCCHHHHHHHHHHHHhC
Confidence 7777777789999999999888999999999999999999999864
No 7
>TIGR00683 nanA N-acetylneuraminate lyase. N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate.
Probab=100.00 E-value=1.3e-63 Score=478.71 Aligned_cols=275 Identities=21% Similarity=0.319 Sum_probs=255.7
Q ss_pred CCceEEeeecCCCCCCCCCHHHHHHHHHHHHHCC-CCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCC
Q 018253 59 ALRLITAIKTPYLPDGRFDLEAYDDLVNMQIVNG-AEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSN 137 (359)
Q Consensus 59 ~~Gi~~al~TPF~~dg~ID~~~l~~li~~li~~G-v~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~ 137 (359)
+.||+++++|||++||+||+++++++++|+++.| ++||+++|||||+++||.+||+++++.+++.+++|+|||+|+++.
T Consensus 1 ~~Gv~~~~~TPf~~dg~iD~~~~~~~i~~~i~~G~v~gi~~~GstGE~~~Lt~eEr~~~~~~~~~~~~~~~pvi~gv~~~ 80 (290)
T TIGR00683 1 LKGIFSALLVSFNEDGTINEKGLRQIIRHNIDKMKVDGLYVGGSTGENFMLSTEEKKEIFRIAKDEAKDQIALIAQVGSV 80 (290)
T ss_pred CCCeEeeeecCCCCCCCcCHHHHHHHHHHHHhCCCcCEEEECCcccccccCCHHHHHHHHHHHHHHhCCCCcEEEecCCC
Confidence 4799999999999999999999999999999999 999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhCCCCEEEEcCCCCCCCCHHHHHHHHHHHHhc---CCeEEEeCCCCCCCCCCHHHHHHHhcCCCeEE
Q 018253 138 STREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSM---GPTIIYNVPSRTGQDIPPRVIHTMAQSPNLAG 214 (359)
Q Consensus 138 st~~ai~la~~a~~~Gadav~v~pP~y~~~s~~~l~~yf~~Ia~a---~PiiiYn~P~~tg~~ls~e~l~~La~~pnivG 214 (359)
+|+++++++|+|+++|||++|++||||++++++++++||++|+++ +|+++||+|++||++++++++.+|+++|||+|
T Consensus 81 ~t~~~i~la~~a~~~Gad~v~v~~P~y~~~~~~~i~~yf~~v~~~~~~lpv~lYn~P~~tg~~l~~~~i~~L~~~pnv~g 160 (290)
T TIGR00683 81 NLKEAVELGKYATELGYDCLSAVTPFYYKFSFPEIKHYYDTIIAETGGLNMIVYSIPFLTGVNMGIEQFGELYKNPKVLG 160 (290)
T ss_pred CHHHHHHHHHHHHHhCCCEEEEeCCcCCCCCHHHHHHHHHHHHhhCCCCCEEEEeCccccccCcCHHHHHHHhcCCCEEE
Confidence 999999999999999999999999999999999999999999874 69999999999999999999999999999999
Q ss_pred EeccCchh-hHhhh--hCCceEEEecCCchhhhhhhhcCCceeecccccccHHHHHHHHH---cCC---cHHHHHHHHHH
Q 018253 215 VKECVGND-RVEHY--TGNGIVVWSGNDDQCHDARWNHGATGVISVTSNLVPGMMRELMF---GGK---NPSLNTKLFPL 285 (359)
Q Consensus 215 iK~ss~d~-~l~~~--~~~~~~v~~G~d~~~~~~~l~~Ga~G~is~~an~~P~l~~~l~~---ag~---a~~l~~~l~~l 285 (359)
||++++|. ++.++ ..++|.||+|.|+.++.. +.+|++|++++++|++|+.++++|+ +|+ +.++|+++.++
T Consensus 161 iK~s~~d~~~~~~~~~~~~~~~v~~G~d~~~~~~-l~~G~~G~i~~~~n~~P~~~~~i~~~~~~gd~~~A~~lq~~~~~~ 239 (290)
T TIGR00683 161 VKFTAGDFYLLERLKKAYPNHLIWAGFDEMMLPA-ASLGVDGAIGSTFNVNGVRARQIFELTKAGKLQEALEIQHVTNDL 239 (290)
T ss_pred EEeCCCCHHHHHHHHHhCCCCEEEECchHHHHHH-HHCCCCEEEecHHHhCHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 99999984 33322 135799999999998875 8899999999999999999999996 465 67899999999
Q ss_pred HHHHhcCCChHHHHHHHHHcCCCCCCCCCCCCC-CCHHHHHHHHHHHHHc
Q 018253 286 IEWLFQEPNPIPLNTALAQLGVVRPVFRLPYVP-LPQEKRAEFVNLVNQI 334 (359)
Q Consensus 286 ~~~l~~~~~~~~~K~al~~~G~~~g~~R~Pl~~-l~~e~~~~i~~~l~~l 334 (359)
++.++..+++..+|++|+++|+..+.+|+|+.+ +++|+++.+++.++++
T Consensus 240 ~~~~~~~~~~~~~K~~l~~~G~~~g~~R~Pl~~~~~~~~~~~~~~~~~~~ 289 (290)
T TIGR00683 240 IEGILANGLYLTIKELLKLEGVDAGYCREPMTSKATPEQKAKAKDLKAKF 289 (290)
T ss_pred HHHHhhcCCCHHHHHHHHHcCCCCCCcCCCCCCCCCHHHHHHHHHHHHhc
Confidence 998877777778999999999988899999997 9999999999999874
No 8
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=100.00 E-value=1.5e-63 Score=477.88 Aligned_cols=274 Identities=24% Similarity=0.358 Sum_probs=256.0
Q ss_pred CCceEEeeecCCCCCCCCCHHHHHHHHHHHHHC-CCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCC
Q 018253 59 ALRLITAIKTPYLPDGRFDLEAYDDLVNMQIVN-GAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSN 137 (359)
Q Consensus 59 ~~Gi~~al~TPF~~dg~ID~~~l~~li~~li~~-Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~ 137 (359)
++||+++++|||++||+||+++++++++|+++. |++|++++|||||+++||.+||+++++.+++++++++|||+|+++.
T Consensus 1 ~~Gv~~a~~TPf~~dg~iD~~~~~~~i~~l~~~~Gv~gi~~~GstGE~~~Lt~~Er~~~~~~~~~~~~~~~~viagv~~~ 80 (288)
T cd00954 1 LKGLIAALLTPFDENGEINEDVLRAIVDYLIEKQGVDGLYVNGSTGEGFLLSVEERKQIAEIVAEAAKGKVTLIAHVGSL 80 (288)
T ss_pred CCCeeeceECCCCCCCCCCHHHHHHHHHHHHhcCCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCCCCeEEeccCCC
Confidence 479999999999999999999999999999999 9999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhCCCCEEEEcCCCCCCCCHHHHHHHHHHHHhc---CCeEEEeCCCCCCCCCCHHHHHHHhcCCCeEE
Q 018253 138 STREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSM---GPTIIYNVPSRTGQDIPPRVIHTMAQSPNLAG 214 (359)
Q Consensus 138 st~~ai~la~~a~~~Gadav~v~pP~y~~~s~~~l~~yf~~Ia~a---~PiiiYn~P~~tg~~ls~e~l~~La~~pnivG 214 (359)
+|+++++++++|+++|||++|++||+|++++++++++||++|+++ +||++||+|.+||++++++++.+|+++|||+|
T Consensus 81 ~~~~ai~~a~~a~~~Gad~v~~~~P~y~~~~~~~i~~~~~~v~~a~~~lpi~iYn~P~~tg~~l~~~~~~~L~~~pnivg 160 (288)
T cd00954 81 NLKESQELAKHAEELGYDAISAITPFYYKFSFEEIKDYYREIIAAAASLPMIIYHIPALTGVNLTLEQFLELFEIPNVIG 160 (288)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCCEEEEeCccccCCCCCHHHHHHHhcCCCEEE
Confidence 999999999999999999999999999999999999999999986 49999999999999999999999999999999
Q ss_pred EeccCchh-h---HhhhhCCceEEEecCCchhhhhhhhcCCceeecccccccHHHHHHHHH---cCC---cHHHHHHHHH
Q 018253 215 VKECVGND-R---VEHYTGNGIVVWSGNDDQCHDARWNHGATGVISVTSNLVPGMMRELMF---GGK---NPSLNTKLFP 284 (359)
Q Consensus 215 iK~ss~d~-~---l~~~~~~~~~v~~G~d~~~~~~~l~~Ga~G~is~~an~~P~l~~~l~~---ag~---a~~l~~~l~~ 284 (359)
||++++|. + +.+..+++|.+|+|.|+.++.. +..|++|++++++|++|+.++++|+ +|+ +.++|+++.+
T Consensus 161 iK~s~~d~~~~~~~~~~~~~~~~v~~G~d~~~~~~-~~~G~~G~i~~~~n~~P~~~~~l~~~~~~gd~~~a~~l~~~~~~ 239 (288)
T cd00954 161 VKFTATDLYDLERIRAASPEDKLVLNGFDEMLLSA-LALGADGAIGSTYNVNGKRYRKIFEAFNAGDIDTARELQHVIND 239 (288)
T ss_pred EEeCCCCHHHHHHHHHhCCCCcEEEEechHHHHHH-HHcCCCEEEeChhhhCHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 99999984 2 3333355899999999988765 8899999999999999999999996 465 5789999999
Q ss_pred HHHHHhcCCChHHHHHHHHHcCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q 018253 285 LIEWLFQEPNPIPLNTALAQLGVVRPVFRLPYVPLPQEKRAEFVNLVNQ 333 (359)
Q Consensus 285 l~~~l~~~~~~~~~K~al~~~G~~~g~~R~Pl~~l~~e~~~~i~~~l~~ 333 (359)
+++.+...+++..+|++|+++|+..|.+|+|+.+++++++++|++++++
T Consensus 240 ~~~~~~~~~~~~~~K~~l~~~G~~~g~~R~Pl~~l~~~~~~~l~~~~~~ 288 (288)
T cd00954 240 VITVLIKNGLYPTLKAILRLMGLDAGPCRLPLRKVTEKALAKAKELAAK 288 (288)
T ss_pred HHHHHhccCCcHHHHHHHHHcCCCCCCcCCCCCCCCHHHHHHHHHHhhC
Confidence 9998777777888999999999988899999999999999999998874
No 9
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=100.00 E-value=2.3e-63 Score=477.27 Aligned_cols=278 Identities=39% Similarity=0.633 Sum_probs=260.1
Q ss_pred CCceEEeeecCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCCC
Q 018253 59 ALRLITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNS 138 (359)
Q Consensus 59 ~~Gi~~al~TPF~~dg~ID~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~s 138 (359)
++|||++++|||++||+||+++++++++|+++.|++|++++|||||+++||.+||+++++.+++++++|+||++|+++.+
T Consensus 2 ~~Gv~~~~~TPf~~dg~iD~~~l~~~i~~l~~~Gv~gi~~~Gs~GE~~~ls~~Er~~~~~~~~~~~~~~~~vi~gv~~~~ 81 (292)
T PRK03170 2 FGGSITALVTPFKEDGSVDFAALRKLVDYLIANGTDGLVVVGTTGESPTLTHEEHEELIRAVVEAVNGRVPVIAGTGSNS 81 (292)
T ss_pred CCceeeeeeCCcCCCCCcCHHHHHHHHHHHHHcCCCEEEECCcCCccccCCHHHHHHHHHHHHHHhCCCCcEEeecCCch
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCEEEEcCCCCCCCCHHHHHHHHHHHHhc--CCeEEEeCCCCCCCCCCHHHHHHHhcCCCeEEEe
Q 018253 139 TREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSM--GPTIIYNVPSRTGQDIPPRVIHTMAQSPNLAGVK 216 (359)
Q Consensus 139 t~~ai~la~~a~~~Gadav~v~pP~y~~~s~~~l~~yf~~Ia~a--~PiiiYn~P~~tg~~ls~e~l~~La~~pnivGiK 216 (359)
|+++++++|+|+++|+|++|++||+|++++++++++||++|+++ +|+++||+|..+|+.+|++++++|+++|||+|+|
T Consensus 82 ~~~~i~~a~~a~~~G~d~v~~~pP~~~~~~~~~i~~~~~~ia~~~~~pv~lYn~P~~~g~~l~~~~~~~L~~~p~v~giK 161 (292)
T PRK03170 82 TAEAIELTKFAEKAGADGALVVTPYYNKPTQEGLYQHFKAIAEATDLPIILYNVPGRTGVDILPETVARLAEHPNIVGIK 161 (292)
T ss_pred HHHHHHHHHHHHHcCCCEEEECCCcCCCCCHHHHHHHHHHHHhcCCCCEEEEECccccCCCCCHHHHHHHHcCCCEEEEE
Confidence 99999999999999999999999999999999999999999987 7999999999999999999999999999999999
Q ss_pred ccCchh-h---HhhhhCCceEEEecCCchhhhhhhhcCCceeecccccccHHHHHHHHH---cCC---cHHHHHHHHHHH
Q 018253 217 ECVGND-R---VEHYTGNGIVVWSGNDDQCHDARWNHGATGVISVTSNLVPGMMRELMF---GGK---NPSLNTKLFPLI 286 (359)
Q Consensus 217 ~ss~d~-~---l~~~~~~~~~v~~G~d~~~~~~~l~~Ga~G~is~~an~~P~l~~~l~~---ag~---a~~l~~~l~~l~ 286 (359)
++++|. + +.+..+++|.+|.|.|+.++.. +.+|++|++|+++|++|++++++|+ +|+ ++++|+++.+++
T Consensus 162 ~s~~d~~~~~~~~~~~~~~~~v~~G~d~~~~~~-l~~G~~G~is~~~n~~P~~~~~l~~~~~~gd~~~a~~l~~~l~~~~ 240 (292)
T PRK03170 162 EATGDLERVSELIELVPDDFAVYSGDDALALPF-LALGGVGVISVAANVAPKEMAEMCDAALAGDFAEAREIHRRLLPLH 240 (292)
T ss_pred ECCCCHHHHHHHHHhCCCCeEEEECChHhHHHH-HHcCCCEEEEhHHhhhHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 999983 3 3333456899999999988764 8899999999999999999999996 465 678999999999
Q ss_pred HHHhcCCChHHHHHHHHHcCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCcc
Q 018253 287 EWLFQEPNPIPLNTALAQLGVVRPVFRLPYVPLPQEKRAEFVNLVNQIGRE 337 (359)
Q Consensus 287 ~~l~~~~~~~~~K~al~~~G~~~g~~R~Pl~~l~~e~~~~i~~~l~~lgl~ 337 (359)
+.++..+++..+|++|+++|++.+.+|+|+.+++++++++|+++++++++.
T Consensus 241 ~~~~~~~~~~~~K~~l~~~G~~~g~~R~P~~~l~~~~~~~i~~~l~~~~~~ 291 (292)
T PRK03170 241 KALFIEPNPIPVKAALNLLGLIEGELRLPLVPLSEEEKEKLRAALKEAGLL 291 (292)
T ss_pred HHHhccCCcHHHHHHHHHcCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCC
Confidence 987777777889999999999878899999999999999999999998864
No 10
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=100.00 E-value=5.6e-62 Score=468.65 Aligned_cols=273 Identities=22% Similarity=0.319 Sum_probs=248.2
Q ss_pred cCCceEEeeecCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCC
Q 018253 58 KALRLITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSN 137 (359)
Q Consensus 58 ~~~Gi~~al~TPF~~dg~ID~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~ 137 (359)
.++||+++++|||++||+||+++++++++++++.||+|++++|||||+++||.+||+++++.+++++++|+|||+||++
T Consensus 5 ~~~Gi~~a~vTPf~~dg~iD~~~l~~li~~l~~~Gv~gi~v~GstGE~~~Lt~eEr~~v~~~~~~~~~g~~pvi~gv~~- 83 (296)
T TIGR03249 5 AGSGLLSFPVTPFDADGSFDEAAYRENIEWLLGYGLEALFAAGGTGEFFSLTPAEYEQVVEIAVSTAKGKVPVYTGVGG- 83 (296)
T ss_pred ccCceEEeeeCCcCCCCCcCHHHHHHHHHHHHhcCCCEEEECCCCcCcccCCHHHHHHHHHHHHHHhCCCCcEEEecCc-
Confidence 4899999999999999999999999999999999999999999999999999999999999999999999999999996
Q ss_pred CHHHHHHHHHHHHhCCCCEEEEcCCCCCCCCHHHHHHHHHHHHhc--CCeEEEeCCCCCCCCCCHHHHHHHhc-CCCeEE
Q 018253 138 STREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSM--GPTIIYNVPSRTGQDIPPRVIHTMAQ-SPNLAG 214 (359)
Q Consensus 138 st~~ai~la~~a~~~Gadav~v~pP~y~~~s~~~l~~yf~~Ia~a--~PiiiYn~P~~tg~~ls~e~l~~La~-~pnivG 214 (359)
+|+++++++++|+++|||++|++||||++++++++++||++|+++ +||++|| ++|++++++++.+|++ +|||+|
T Consensus 84 ~t~~ai~~a~~a~~~Gadav~~~pP~y~~~s~~~i~~~f~~v~~a~~~pvilYn---~~g~~l~~~~~~~La~~~~nvvg 160 (296)
T TIGR03249 84 NTSDAIEIARLAEKAGADGYLLLPPYLINGEQEGLYAHVEAVCESTDLGVIVYQ---RDNAVLNADTLERLADRCPNLVG 160 (296)
T ss_pred cHHHHHHHHHHHHHhCCCEEEECCCCCCCCCHHHHHHHHHHHHhccCCCEEEEe---CCCCCCCHHHHHHHHhhCCCEEE
Confidence 799999999999999999999999999999999999999999997 6999999 6799999999999995 999999
Q ss_pred EeccCchh-h---HhhhhCCceEEEecC---CchhhhhhhhcCCceeecccccccHHHHHHHHH---cCC---cHHHHH-
Q 018253 215 VKECVGND-R---VEHYTGNGIVVWSGN---DDQCHDARWNHGATGVISVTSNLVPGMMRELMF---GGK---NPSLNT- 280 (359)
Q Consensus 215 iK~ss~d~-~---l~~~~~~~~~v~~G~---d~~~~~~~l~~Ga~G~is~~an~~P~l~~~l~~---ag~---a~~l~~- 280 (359)
||++++|. + +.+..+++|.||+|. |..++. .+.+|++|++++++|++|++++++|+ +|+ ++++|+
T Consensus 161 iKds~~d~~~~~~~~~~~~~~~~v~~G~~~~d~~~~~-~~~~Ga~G~is~~~n~~P~~~~~~~~~~~~gd~~~a~~l~~~ 239 (296)
T TIGR03249 161 FKDGIGDMEQMIEITQRLGDRLGYLGGMPTAEVTAPA-YLPLGVTSYSSAIFNFIPHIARAFYEALRRGDHATVGEIYKE 239 (296)
T ss_pred EEeCCCCHHHHHHHHHHcCCCeEEEeCCCcchhhHHH-HHhCCCCEEEecHHHhhHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 99999984 3 333346789999997 555555 48899999999999999999999986 465 567766
Q ss_pred HHHHHHHHHh-cCC-ChHHHHHHHHHcCCCCCCCCCCCCCCCHHHHHHHHHHHHHcC
Q 018253 281 KLFPLIEWLF-QEP-NPIPLNTALAQLGVVRPVFRLPYVPLPQEKRAEFVNLVNQIG 335 (359)
Q Consensus 281 ~l~~l~~~l~-~~~-~~~~~K~al~~~G~~~g~~R~Pl~~l~~e~~~~i~~~l~~lg 335 (359)
.+.|+++.+. ... ++..+|++|+++|++.|.+|+|+.+++++++++|+++++++|
T Consensus 240 ~~~~l~~~~~~~~~~~~~~~K~al~~~G~~~g~~R~Pl~~l~~~~~~~i~~~l~~~~ 296 (296)
T TIGR03249 240 FILPINEIRNRKKGYAVSIIKAGMEIVGLPAGPVRPPLTDLTKEEYAQLEVILKKAG 296 (296)
T ss_pred HHHHHHHHHhccccCCcHHHHHHHHHcCCCCCCCCCCCCCCCHHHHHHHHHHHHhcC
Confidence 5899998765 323 356799999999998889999999999999999999999875
No 11
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=100.00 E-value=9.2e-62 Score=464.16 Aligned_cols=272 Identities=42% Similarity=0.671 Sum_probs=254.4
Q ss_pred CCceEEeeecCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCCC
Q 018253 59 ALRLITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNS 138 (359)
Q Consensus 59 ~~Gi~~al~TPF~~dg~ID~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~s 138 (359)
++|||++++|||++||+||+++++++++|+++.|++|++++|||||+++||.+||+++++.+++++++++||++|+++.|
T Consensus 1 ~~Gv~~~~~TPf~~dg~iD~~~~~~~i~~l~~~Gv~gl~v~GstGE~~~lt~~Er~~l~~~~~~~~~~~~~vi~gv~~~~ 80 (284)
T cd00950 1 FGGSITALVTPFKDDGSVDFDALERLIEFQIENGTDGLVVCGTTGESPTLSDEEHEAVIEAVVEAVNGRVPVIAGTGSNN 80 (284)
T ss_pred CCCeeeeeeCCcCCCCCcCHHHHHHHHHHHHHcCCCEEEECCCCcchhhCCHHHHHHHHHHHHHHhCCCCcEEeccCCcc
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCEEEEcCCCCCCCCHHHHHHHHHHHHhc--CCeEEEeCCCCCCCCCCHHHHHHHhcCCCeEEEe
Q 018253 139 TREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSM--GPTIIYNVPSRTGQDIPPRVIHTMAQSPNLAGVK 216 (359)
Q Consensus 139 t~~ai~la~~a~~~Gadav~v~pP~y~~~s~~~l~~yf~~Ia~a--~PiiiYn~P~~tg~~ls~e~l~~La~~pnivGiK 216 (359)
++++++++++|+++|+|++|++||+|++++++++++||++|+++ +||++||+|.++|+.+|++++++|+++|||+|+|
T Consensus 81 ~~~~~~~a~~a~~~G~d~v~~~~P~~~~~~~~~l~~~~~~ia~~~~~pi~lYn~P~~~g~~ls~~~~~~L~~~p~v~giK 160 (284)
T cd00950 81 TAEAIELTKRAEKAGADAALVVTPYYNKPSQEGLYAHFKAIAEATDLPVILYNVPGRTGVNIEPETVLRLAEHPNIVGIK 160 (284)
T ss_pred HHHHHHHHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHHHhcCCCCEEEEEChhHhCCCCCHHHHHHHhcCCCEEEEE
Confidence 99999999999999999999999999999999999999999996 7999999999999999999999999999999999
Q ss_pred ccCchh-h---HhhhhCCceEEEecCCchhhhhhhhcCCceeecccccccHHHHHHHHH---cCC---cHHHHHHHHHHH
Q 018253 217 ECVGND-R---VEHYTGNGIVVWSGNDDQCHDARWNHGATGVISVTSNLVPGMMRELMF---GGK---NPSLNTKLFPLI 286 (359)
Q Consensus 217 ~ss~d~-~---l~~~~~~~~~v~~G~d~~~~~~~l~~Ga~G~is~~an~~P~l~~~l~~---ag~---a~~l~~~l~~l~ 286 (359)
++++|. + +.+..+++|.+|+|.|+.++.. +..|++|++++++|++|++++++|+ +|+ +.++|+++.+++
T Consensus 161 ~s~~~~~~~~~~~~~~~~~~~v~~G~d~~~~~~-~~~G~~G~~s~~~n~~p~~~~~~~~~~~~g~~~~a~~l~~~l~~~~ 239 (284)
T cd00950 161 EATGDLDRVSELIALCPDDFAVLSGDDALTLPF-LALGGVGVISVAANVAPKLMAEMVRAALAGDLEKARELHRKLLPLI 239 (284)
T ss_pred ECCCCHHHHHHHHHhCCCCeEEEeCChHhHHHH-HHCCCCEEEehHHHhhHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 999883 3 3344467999999999887764 8899999999999999999999996 464 578999999999
Q ss_pred HHHhcCCChHHHHHHHHHcCCCCCCCCCCCCCCCHHHHHHHHHHH
Q 018253 287 EWLFQEPNPIPLNTALAQLGVVRPVFRLPYVPLPQEKRAEFVNLV 331 (359)
Q Consensus 287 ~~l~~~~~~~~~K~al~~~G~~~g~~R~Pl~~l~~e~~~~i~~~l 331 (359)
++++..+++..+|++|+++|+..+.+|+|+.+++++++++|++.|
T Consensus 240 ~~~~~~~~~~~~K~~l~~~G~~~g~~R~P~~~l~~~~~~~i~~~~ 284 (284)
T cd00950 240 KALFAEPNPIPVKAALALLGLISGELRLPLVPLSEELRAKLRAAL 284 (284)
T ss_pred HHHhcCCCcHHHHHHHHHcCCCCCCCCCCCCCCCHHHHHHHHHhC
Confidence 988777777889999999999888999999999999999999764
No 12
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=100.00 E-value=1.7e-61 Score=461.28 Aligned_cols=269 Identities=40% Similarity=0.650 Sum_probs=251.9
Q ss_pred eEEeeecCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCCCHHH
Q 018253 62 LITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTRE 141 (359)
Q Consensus 62 i~~al~TPF~~dg~ID~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~st~~ 141 (359)
||++++|||++||+||+++++++++|+++.|++|++++|||||+++||.+||+++++.+++++++++|||+|+++.++++
T Consensus 1 i~~a~~TPf~~dg~iD~~~~~~~i~~l~~~Gv~gi~~~GstGE~~~ls~~Er~~l~~~~~~~~~~~~~vi~gv~~~~~~~ 80 (281)
T cd00408 1 VIPALVTPFTADGEVDLDALRRLVEFLIEAGVDGLVVLGTTGEAPTLTDEERKEVIEAVVEAVAGRVPVIAGVGANSTRE 80 (281)
T ss_pred CCCCeeCCcCCCCCcCHHHHHHHHHHHHHcCCCEEEECCCCcccccCCHHHHHHHHHHHHHHhCCCCeEEEecCCccHHH
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCCEEEEcCCCCCCCCHHHHHHHHHHHHhc--CCeEEEeCCCCCCCCCCHHHHHHHhcCCCeEEEeccC
Q 018253 142 AIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSM--GPTIIYNVPSRTGQDIPPRVIHTMAQSPNLAGVKECV 219 (359)
Q Consensus 142 ai~la~~a~~~Gadav~v~pP~y~~~s~~~l~~yf~~Ia~a--~PiiiYn~P~~tg~~ls~e~l~~La~~pnivGiK~ss 219 (359)
+++++++|+++|+|++|++||+|++++++++++||++|+++ .|+++||+|.+||+.++++++.+|+++|||+|+|+++
T Consensus 81 ~i~~a~~a~~~Gad~v~v~pP~y~~~~~~~~~~~~~~ia~~~~~pi~iYn~P~~tg~~l~~~~~~~L~~~~~v~giK~s~ 160 (281)
T cd00408 81 AIELARHAEEAGADGVLVVPPYYNKPSQEGIVAHFKAVADASDLPVILYNIPGRTGVDLSPETIARLAEHPNIVGIKDSS 160 (281)
T ss_pred HHHHHHHHHHcCCCEEEECCCcCCCCCHHHHHHHHHHHHhcCCCCEEEEECccccCCCCCHHHHHHHhcCCCEEEEEeCC
Confidence 99999999999999999999999999999999999999996 7999999999999999999999999999999999999
Q ss_pred chh-h---HhhhhCCceEEEecCCchhhhhhhhcCCceeecccccccHHHHHHHHH---cCC---cHHHHHHHHHHHHHH
Q 018253 220 GND-R---VEHYTGNGIVVWSGNDDQCHDARWNHGATGVISVTSNLVPGMMRELMF---GGK---NPSLNTKLFPLIEWL 289 (359)
Q Consensus 220 ~d~-~---l~~~~~~~~~v~~G~d~~~~~~~l~~Ga~G~is~~an~~P~l~~~l~~---ag~---a~~l~~~l~~l~~~l 289 (359)
+|. + +.+..+++|.+|+|.|.+++.. +..|++|++++++|++|++++++|+ +|+ ++++|+++.++++.+
T Consensus 161 ~d~~~~~~~~~~~~~~~~v~~G~d~~~~~~-l~~G~~G~i~~~~n~~p~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~ 239 (281)
T cd00408 161 GDLDRLTRLIALLGPDFAVLSGDDDLLLPA-LALGADGAISGAANVAPKLAVALYEAARAGDLEEARALQDRLLPLIEAL 239 (281)
T ss_pred CCHHHHHHHHHhcCCCeEEEEcchHHHHHH-HHcCCCEEEehHHhhCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 883 3 3344467999999999888764 8999999999999999999999996 454 678999999999988
Q ss_pred hcCCChHHHHHHHHHcCCCCCCCCCCCCCCCHHHHHHHHHHH
Q 018253 290 FQEPNPIPLNTALAQLGVVRPVFRLPYVPLPQEKRAEFVNLV 331 (359)
Q Consensus 290 ~~~~~~~~~K~al~~~G~~~g~~R~Pl~~l~~e~~~~i~~~l 331 (359)
...+++..+|++|+++|+..+.+|+|+.+++++++++|++++
T Consensus 240 ~~~~~~~~~K~~l~~~G~~~g~~R~P~~~l~~~~~~~l~~~~ 281 (281)
T cd00408 240 FKEGNPAPVKAALALLGLDAGPVRLPLVPLSEEERAKLEALL 281 (281)
T ss_pred hcCCCcHHHHHHHHHcCCCCCCcCCCCCCCCHHHHHHHHHhC
Confidence 877788889999999999889999999999999999998763
No 13
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional
Probab=100.00 E-value=8.7e-61 Score=461.75 Aligned_cols=274 Identities=24% Similarity=0.321 Sum_probs=246.9
Q ss_pred cCCceEEeeecCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCC
Q 018253 58 KALRLITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSN 137 (359)
Q Consensus 58 ~~~Gi~~al~TPF~~dg~ID~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~ 137 (359)
+++||+++++|||++||+||+++++++++|++++||+||+++|||||+++||.+||+++++.+++.+++|+|||+|+++
T Consensus 7 ~~~Gv~~a~vTPf~~dg~iD~~~l~~li~~l~~~Gv~Gi~~~GstGE~~~Lt~eEr~~~~~~~~~~~~~~~pvi~gv~~- 85 (303)
T PRK03620 7 LGSGLLSFPVTPFDADGSFDEAAYREHLEWLAPYGAAALFAAGGTGEFFSLTPDEYSQVVRAAVETTAGRVPVIAGAGG- 85 (303)
T ss_pred CcCceEEeeeCCCCCCCCcCHHHHHHHHHHHHHcCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCCCCcEEEecCC-
Confidence 4799999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred CHHHHHHHHHHHHhCCCCEEEEcCCCCCCCCHHHHHHHHHHHHhc--CCeEEEeCCCCCCCCCCHHHHHHHh-cCCCeEE
Q 018253 138 STREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSM--GPTIIYNVPSRTGQDIPPRVIHTMA-QSPNLAG 214 (359)
Q Consensus 138 st~~ai~la~~a~~~Gadav~v~pP~y~~~s~~~l~~yf~~Ia~a--~PiiiYn~P~~tg~~ls~e~l~~La-~~pnivG 214 (359)
+|+++++++++|+++|||++|++||||++++++++++||++|+++ +||++||.| |++++++++.+|+ ++|||+|
T Consensus 86 ~t~~~i~~~~~a~~~Gadav~~~pP~y~~~~~~~i~~~f~~va~~~~lpi~lYn~~---g~~l~~~~l~~L~~~~pni~g 162 (303)
T PRK03620 86 GTAQAIEYAQAAERAGADGILLLPPYLTEAPQEGLAAHVEAVCKSTDLGVIVYNRD---NAVLTADTLARLAERCPNLVG 162 (303)
T ss_pred CHHHHHHHHHHHHHhCCCEEEECCCCCCCCCHHHHHHHHHHHHHhCCCCEEEEcCC---CCCCCHHHHHHHHhhCCCEEE
Confidence 999999999999999999999999999999999999999999997 799999954 7899999999999 8999999
Q ss_pred EeccCchh-h---HhhhhCCceEEEecCC--chhhhhhhhcCCceeecccccccHHHHHHHHH---cCC---cHHHHH-H
Q 018253 215 VKECVGND-R---VEHYTGNGIVVWSGND--DQCHDARWNHGATGVISVTSNLVPGMMRELMF---GGK---NPSLNT-K 281 (359)
Q Consensus 215 iK~ss~d~-~---l~~~~~~~~~v~~G~d--~~~~~~~l~~Ga~G~is~~an~~P~l~~~l~~---ag~---a~~l~~-~ 281 (359)
||++++|. + +.+..+++|.||+|.| +..+...+.+|++|++++++|++|++++++|+ +|+ ++++++ .
T Consensus 163 iK~s~~d~~~~~~~~~~~~~~f~vl~G~d~~e~~~~~~~~~G~~G~is~~an~~P~~~~~l~~~~~~gd~~~A~~l~~~~ 242 (303)
T PRK03620 163 FKDGVGDIELMQRIVRALGDRLLYLGGLPTAEVFAAAYLALGVPTYSSAVFNFVPEIALAFYRALRAGDHATVDRLLDDF 242 (303)
T ss_pred EEeCCCCHHHHHHHHHHcCCCeEEEeCCCcchhhHHHHHhCCCCEEEecHHhhhHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 99999984 3 3334467999999984 33433457899999999999999999999996 465 456754 5
Q ss_pred HHHHHHHHh-cCC-ChHHHHHHHHHcCCCCCCCCCCCCCCCHHHHHHHHHHHHHcC
Q 018253 282 LFPLIEWLF-QEP-NPIPLNTALAQLGVVRPVFRLPYVPLPQEKRAEFVNLVNQIG 335 (359)
Q Consensus 282 l~~l~~~l~-~~~-~~~~~K~al~~~G~~~g~~R~Pl~~l~~e~~~~i~~~l~~lg 335 (359)
+.|+++.+. ... ++..+|++|+++|++.|.+|+|+.+++++++++|++++++++
T Consensus 243 ~~~l~~~~~~~~~~~~~~~K~al~~~G~~~g~~R~Pl~~l~~~~~~~i~~~l~~~~ 298 (303)
T PRK03620 243 FLPYVALRNRKKGYAVSIVKAGARLVGLDAGPVRAPLTDLTPEELAELAALIAKGG 298 (303)
T ss_pred HHHHHHHHhccccCCcHHHHHHHHHcCCCCCCCCCCCCCCCHHHHHHHHHHHHHhh
Confidence 789988654 223 367799999999998889999999999999999999999876
No 14
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=100.00 E-value=1.5e-60 Score=461.14 Aligned_cols=273 Identities=20% Similarity=0.215 Sum_probs=247.2
Q ss_pred CCceEEeeecCCCCC-------CCCCHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEE
Q 018253 59 ALRLITAIKTPYLPD-------GRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVI 131 (359)
Q Consensus 59 ~~Gi~~al~TPF~~d-------g~ID~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpVi 131 (359)
++||+++++|||++| |+||++++++++++++++||+||+++|||||+++||.+||+++++.+++.+++|+|||
T Consensus 2 ~~Gv~~~~~TPf~~~~~~~~~~g~iD~~~l~~lv~~li~~Gv~Gi~v~GstGE~~~Lt~eEr~~v~~~~~~~~~grvpvi 81 (309)
T cd00952 2 IKGVWAIVPTPSKPDASDWRATDTVDLDETARLVERLIAAGVDGILTMGTFGECATLTWEEKQAFVATVVETVAGRVPVF 81 (309)
T ss_pred CCceEeeeccCccCCccccccCCCcCHHHHHHHHHHHHHcCCCEEEECcccccchhCCHHHHHHHHHHHHHHhCCCCCEE
Confidence 689999999999985 8999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCCCCHHHHHHHHHHHHhCCCCEEEEcCCCCCCCCHHHHHHHHHHHHhc---CCeEEEeCCCCCCCCCCHHHHHHHhc
Q 018253 132 GNTGSNSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSM---GPTIIYNVPSRTGQDIPPRVIHTMAQ 208 (359)
Q Consensus 132 agvg~~st~~ai~la~~a~~~Gadav~v~pP~y~~~s~~~l~~yf~~Ia~a---~PiiiYn~P~~tg~~ls~e~l~~La~ 208 (359)
+|+++++|+++++++++|+++|||++|++||||++++++++++||++|+++ +||++||+|.+||++++++++.+|++
T Consensus 82 ~Gv~~~~t~~ai~~a~~A~~~Gad~vlv~~P~y~~~~~~~l~~yf~~va~a~~~lPv~iYn~P~~tg~~l~~~~l~~L~~ 161 (309)
T cd00952 82 VGATTLNTRDTIARTRALLDLGADGTMLGRPMWLPLDVDTAVQFYRDVAEAVPEMAIAIYANPEAFKFDFPRAAWAELAQ 161 (309)
T ss_pred EEeccCCHHHHHHHHHHHHHhCCCEEEECCCcCCCCCHHHHHHHHHHHHHhCCCCcEEEEcCchhcCCCCCHHHHHHHhc
Confidence 999999999999999999999999999999999999999999999999985 59999999999999999999999999
Q ss_pred CCCeEEEeccCchh-hH---hhhhCCceEEEecCCchhhhhhhhcCC---ceeecccccccHHHHHHHHH---cCC---c
Q 018253 209 SPNLAGVKECVGND-RV---EHYTGNGIVVWSGNDDQCHDARWNHGA---TGVISVTSNLVPGMMRELMF---GGK---N 275 (359)
Q Consensus 209 ~pnivGiK~ss~d~-~l---~~~~~~~~~v~~G~d~~~~~~~l~~Ga---~G~is~~an~~P~l~~~l~~---ag~---a 275 (359)
+|||+|||+++ |. ++ .+..+++|.||+|.|++ +.. +..|+ +|++++++|++|++++++|+ +|+ +
T Consensus 162 ~pnivgiKdss-d~~~~~~~i~~~~~~~~v~~g~d~~-l~~-~~~~~~~~~G~is~~~n~~P~~~~~l~~a~~~Gd~~~A 238 (309)
T cd00952 162 IPQVVAAKYLG-DIGALLSDLAAVKGRMRLLPLEDDY-YAA-ARLFPEEVTAFWSSGAACGPAPVTALRDAVATGDWTDA 238 (309)
T ss_pred CCCEEEEEecC-ChHHHHHHHHHcCCCeEEeecchhH-HHH-HHhcCccCccEEEeccccCcHHHHHHHHHHHcCCHHHH
Confidence 99999999999 73 33 33345799999999985 444 44554 59999999999999999997 465 6
Q ss_pred HHHHHHHHHHHHHHhcCC--------ChHHHHHHHHHcCC-CCCCCCCCCCCCCHHHHHHHHHHHHHc
Q 018253 276 PSLNTKLFPLIEWLFQEP--------NPIPLNTALAQLGV-VRPVFRLPYVPLPQEKRAEFVNLVNQI 334 (359)
Q Consensus 276 ~~l~~~l~~l~~~l~~~~--------~~~~~K~al~~~G~-~~g~~R~Pl~~l~~e~~~~i~~~l~~l 334 (359)
+++|+++.++++.++..+ ++..+|++|+++|+ ..+.+|+|+.++++++++++|+--+++
T Consensus 239 ~~lq~~~~~~~~~~~~~~~~~~~~~~~~~~~K~al~~~G~~~~g~~R~Pl~~~~~~~~~~~~~~~~~~ 306 (309)
T cd00952 239 RALTDRMRWAAEPLFPRGDFSEFSKYNIALEKARFDAAGYMRAGPARPPYNTAPEAYLEGARESGRRW 306 (309)
T ss_pred HHHHHHHHHHHHHHhccCccccccccchHHHHHHHHhcCCCCCCCCCCCCCCCCHHHHHHHHHHhhhh
Confidence 789999999998776442 24568999999997 678899999999999999999887764
No 15
>cd00953 KDG_aldolase KDG (2-keto-3-deoxygluconate) aldolases found in archaea. This subfamily of enzymes is adapted for high thermostability and shows specificity for non-phosphorylated substrates. The enzyme catalyses the reversible aldol cleavage of 2-keto-3-dexoygluconate to pyruvate and glyceraldehyde, the third step of a modified non-phosphorylated Entner-Doudoroff pathway of glucose oxidation. KDG aldolase shows no significant sequence similarity to microbial 2-keto-3-deoxyphosphogluconate (KDPG) aldolases, and the enzyme shows no activity with glyceraldehyde 3-phosphate as substrate. The enzyme is a tetramer and a member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=100.00 E-value=1.4e-60 Score=455.34 Aligned_cols=269 Identities=25% Similarity=0.321 Sum_probs=246.7
Q ss_pred CceEEeeecCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCCCH
Q 018253 60 LRLITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNST 139 (359)
Q Consensus 60 ~Gi~~al~TPF~~dg~ID~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~st 139 (359)
.|+++|++|||++ |+||+++++++++|+++.||+||+++|||||+++||.+||+++++.+++.++ + ||+||++.+|
T Consensus 2 ~~v~~a~~TPf~~-g~iD~~~~~~li~~l~~~Gv~Gl~~~GstGE~~~Lt~eEr~~l~~~~~~~~~-~--vi~gvg~~~~ 77 (279)
T cd00953 2 PDKITPVITPFTG-NKIDKEKFKKHCENLISKGIDYVFVAGTTGLGPSLSFQEKLELLKAYSDITD-K--VIFQVGSLNL 77 (279)
T ss_pred CCcccceecCcCC-CCcCHHHHHHHHHHHHHcCCcEEEEcccCCCcccCCHHHHHHHHHHHHHHcC-C--EEEEeCcCCH
Confidence 5899999999998 9999999999999999999999999999999999999999999999999874 4 8999999999
Q ss_pred HHHHHHHHHHHhCCCCEEEEcCCCCCC-CCHHHHHHHHHHHHhcCCeEEEeCCCCCCCCCCHHHHHHHhc-CCCeEEEec
Q 018253 140 REAIHATEQGFAVGMHAALHINPYYGK-TSLEGLISHFDSVLSMGPTIIYNVPSRTGQDIPPRVIHTMAQ-SPNLAGVKE 217 (359)
Q Consensus 140 ~~ai~la~~a~~~Gadav~v~pP~y~~-~s~~~l~~yf~~Ia~a~PiiiYn~P~~tg~~ls~e~l~~La~-~pnivGiK~ 217 (359)
+++++++|+|+++|||++|++||||++ ++++++++||++|++.+|+++||+|.+||++++++++.+|++ +|||+|||+
T Consensus 78 ~~ai~~a~~a~~~Gad~v~v~~P~y~~~~~~~~i~~yf~~v~~~lpv~iYn~P~~tg~~l~~~~l~~L~~~~p~vvgiK~ 157 (279)
T cd00953 78 EESIELARAAKSFGIYAIASLPPYYFPGIPEEWLIKYFTDISSPYPTFIYNYPKATGYDINARMAKEIKKAGGDIIGVKD 157 (279)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCcCCCCCCHHHHHHHHHHHHhcCCEEEEeCccccCCCCCHHHHHHHHhcCCCEEEEEe
Confidence 999999999999999999999999988 589999999999999779999999999999999999999995 799999999
Q ss_pred cCchh-hHhhh--hCCceEEEecCCchhhhhhhhcCCceeecccccccHHHHHHHHHcC---CcHHHHHHHHHHHHHHhc
Q 018253 218 CVGND-RVEHY--TGNGIVVWSGNDDQCHDARWNHGATGVISVTSNLVPGMMRELMFGG---KNPSLNTKLFPLIEWLFQ 291 (359)
Q Consensus 218 ss~d~-~l~~~--~~~~~~v~~G~d~~~~~~~l~~Ga~G~is~~an~~P~l~~~l~~ag---~a~~l~~~l~~l~~~l~~ 291 (359)
+++|. ++.++ ..++|.||+|.|+.+++. +..|++|++++++|++|++++++|++. +++++|+++.++++.+..
T Consensus 158 s~~d~~~~~~~~~~~~~~~v~~G~d~~~~~~-l~~Ga~G~i~~~~n~~P~~~~~l~~a~~~~~a~~~q~~~~~l~~~~~~ 236 (279)
T cd00953 158 TNEDISHMLEYKRLVPDFKVYSGPDSLIFSA-LRSGLDGSVAAASNYLPEVFVKIKDHVAIEDAFKLQFLINEVLDASRK 236 (279)
T ss_pred CccCHHHHHHHHHhCCCeEEEEccHHHHHHH-HHcCCCeEEechhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99984 33332 235899999999988865 899999999999999999999999864 577899999999997766
Q ss_pred CCChHHHHHHHH-HcCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q 018253 292 EPNPIPLNTALA-QLGVVRPVFRLPYVPLPQEKRAEFVNLVNQ 333 (359)
Q Consensus 292 ~~~~~~~K~al~-~~G~~~g~~R~Pl~~l~~e~~~~i~~~l~~ 333 (359)
.+++..+|++++ ++|+..|.+|+|+.+++++++++|++++++
T Consensus 237 ~~~~~~~k~~~~~~~G~~~g~~R~Pl~~l~~~~~~~l~~~l~~ 279 (279)
T cd00953 237 YGSWSANYSLVKIFQGYDAGEPRPPFYPLDEEEEEKLRKEVNE 279 (279)
T ss_pred cCCcHHHHHHHHHhcCCCCCCCCCCCCCCCHHHHHHHHHHhhC
Confidence 667777999997 699988899999999999999999998864
No 16
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=100.00 E-value=7.9e-60 Score=452.29 Aligned_cols=268 Identities=23% Similarity=0.308 Sum_probs=242.8
Q ss_pred CceEEeeecCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCCCH
Q 018253 60 LRLITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNST 139 (359)
Q Consensus 60 ~Gi~~al~TPF~~dg~ID~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~st 139 (359)
+||+++++|||++||+||+++++++++|+++.||+||+++|||||+++||.+||+++++.+++.+++|+|||+|++. +|
T Consensus 2 ~Gi~~a~vTPf~~dg~iD~~~l~~l~~~l~~~Gv~gi~v~GstGE~~~Ls~eEr~~l~~~~~~~~~~~~pvi~gv~~-~t 80 (289)
T cd00951 2 SGLLSFPVTHFDADGSFDEDAYRAHVEWLLSYGAAALFAAGGTGEFFSLTPDEYAQVVRAAVEETAGRVPVLAGAGY-GT 80 (289)
T ss_pred CCeEEEeecCCCCCCCcCHHHHHHHHHHHHHcCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCCCCCEEEecCC-CH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999997 99
Q ss_pred HHHHHHHHHHHhCCCCEEEEcCCCCCCCCHHHHHHHHHHHHhc--CCeEEEeCCCCCCCCCCHHHHHHHhc-CCCeEEEe
Q 018253 140 REAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSM--GPTIIYNVPSRTGQDIPPRVIHTMAQ-SPNLAGVK 216 (359)
Q Consensus 140 ~~ai~la~~a~~~Gadav~v~pP~y~~~s~~~l~~yf~~Ia~a--~PiiiYn~P~~tg~~ls~e~l~~La~-~pnivGiK 216 (359)
+++++++++|+++|+|++|++||||++++++++++||++|+++ +||++||. +|++++++++.+|++ +|||+|+|
T Consensus 81 ~~~i~~a~~a~~~Gad~v~~~pP~y~~~~~~~i~~~f~~v~~~~~~pi~lYn~---~g~~l~~~~l~~L~~~~pnivgiK 157 (289)
T cd00951 81 ATAIAYAQAAEKAGADGILLLPPYLTEAPQEGLYAHVEAVCKSTDLGVIVYNR---ANAVLTADSLARLAERCPNLVGFK 157 (289)
T ss_pred HHHHHHHHHHHHhCCCEEEECCCCCCCCCHHHHHHHHHHHHhcCCCCEEEEeC---CCCCCCHHHHHHHHhcCCCEEEEE
Confidence 9999999999999999999999999999999999999999997 79999994 688999999999997 99999999
Q ss_pred ccCchh-h---HhhhhCCceEEEecC---CchhhhhhhhcCCceeecccccccHHHHHHHHH---cCC---cHHH-HHHH
Q 018253 217 ECVGND-R---VEHYTGNGIVVWSGN---DDQCHDARWNHGATGVISVTSNLVPGMMRELMF---GGK---NPSL-NTKL 282 (359)
Q Consensus 217 ~ss~d~-~---l~~~~~~~~~v~~G~---d~~~~~~~l~~Ga~G~is~~an~~P~l~~~l~~---ag~---a~~l-~~~l 282 (359)
++++|. + +.+..+++|.||+|. |.+++. .+.+|++|++++++|++|++++++|+ +|+ +.++ ++++
T Consensus 158 ds~~d~~~~~~~~~~~~~~~~v~~G~~~~d~~~~~-~l~~Ga~G~is~~~n~~P~~~~~l~~~~~~gd~~~a~~~~~~~~ 236 (289)
T cd00951 158 DGVGDIELMRRIVAKLGDRLLYLGGLPTAEVFALA-YLAMGVPTYSSAVFNFVPEIALAFYAAVRAGDHATVKRLLRDFF 236 (289)
T ss_pred eCCCCHHHHHHHHHhcCCCeEEEeCCCcchHhHHH-HHHCCCCEEEechhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 999983 3 333345689999997 555665 48999999999999999999999986 465 4566 5568
Q ss_pred HHHHHHHhc-CC-ChHHHHHHHHHcCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q 018253 283 FPLIEWLFQ-EP-NPIPLNTALAQLGVVRPVFRLPYVPLPQEKRAEFVNLVN 332 (359)
Q Consensus 283 ~~l~~~l~~-~~-~~~~~K~al~~~G~~~g~~R~Pl~~l~~e~~~~i~~~l~ 332 (359)
.++++.+.. .. ++..+|++|+++|+..|.+|+|+.+++++++++|+++++
T Consensus 237 ~~~~~~~~~~~~~~~~~~K~al~~~G~~~g~~R~Pl~~l~~~~~~~i~~~l~ 288 (289)
T cd00951 237 LPYVDIRNRRKGYAVSIVKAGARLVGRDAGPVRPPLTDLTEEELAQLTALIK 288 (289)
T ss_pred HHHHHHHhccccCCcHHHHHHHHHcCCCCCCCCCCCCCCCHHHHHHHHHHHh
Confidence 899887632 23 467799999999998889999999999999999999875
No 17
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=99.92 E-value=3.1e-24 Score=192.54 Aligned_cols=172 Identities=16% Similarity=0.153 Sum_probs=147.3
Q ss_pred EEeeecCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCC-CcEEEEecCCCC---
Q 018253 63 ITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGA-SVKVIGNTGSNS--- 138 (359)
Q Consensus 63 ~~al~TPF~~dg~ID~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~g-rvpViagvg~~s--- 138 (359)
+.++.+|+. |++.++++++++++.|++|++++| ++++.+++..++ ++||++|+++.+
T Consensus 2 ~~~~~~~~~-----d~~~~~~~~~~~~~~gv~gi~~~g--------------~~i~~~~~~~~~~~~~v~~~v~~~~~~~ 62 (201)
T cd00945 2 DLTLLHPDA-----TLEDIAKLCDEAIEYGFAAVCVNP--------------GYVRLAADALAGSDVPVIVVVGFPTGLT 62 (201)
T ss_pred cccccCCCC-----CHHHHHHHHHHHHHhCCcEEEECH--------------HHHHHHHHHhCCCCCeEEEEecCCCCCC
Confidence 456667765 999999999999999999999998 888889998888 999999999999
Q ss_pred -HHHHHHHHHHHHhCCCCEEEEcCCCCCCCC--HHHHHHHHHHHHhc----CCeEEEeCCCCCCCCCCHHHHHHH---hc
Q 018253 139 -TREAIHATEQGFAVGMHAALHINPYYGKTS--LEGLISHFDSVLSM----GPTIIYNVPSRTGQDIPPRVIHTM---AQ 208 (359)
Q Consensus 139 -t~~ai~la~~a~~~Gadav~v~pP~y~~~s--~~~l~~yf~~Ia~a----~PiiiYn~P~~tg~~ls~e~l~~L---a~ 208 (359)
++++++++++|+++|||++++.+|+|+.++ ++++.+||++++++ .|+++||+|..+ ++++.+.++ ++
T Consensus 63 ~~~~~~~~a~~a~~~Gad~i~v~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~pv~iy~~p~~~---~~~~~~~~~~~~~~ 139 (201)
T cd00945 63 TTEVKVAEVEEAIDLGADEIDVVINIGSLKEGDWEEVLEEIAAVVEAADGGLPLKVILETRGL---KTADEIAKAARIAA 139 (201)
T ss_pred cHHHHHHHHHHHHHcCCCEEEEeccHHHHhCCCHHHHHHHHHHHHHHhcCCceEEEEEECCCC---CCHHHHHHHHHHHH
Confidence 999999999999999999999999998887 89999999999975 699999999877 678877776 45
Q ss_pred CCCeEEEeccCc------hh-h---HhhhhC--CceEEEecCC--chhhhhhhhcCCceeecc
Q 018253 209 SPNLAGVKECVG------ND-R---VEHYTG--NGIVVWSGND--DQCHDARWNHGATGVISV 257 (359)
Q Consensus 209 ~pnivGiK~ss~------d~-~---l~~~~~--~~~~v~~G~d--~~~~~~~l~~Ga~G~is~ 257 (359)
.+++.++|++++ +. + +.+..+ -+|.++.|.+ +.+.. .+..|++|++.+
T Consensus 140 ~~g~~~iK~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~gg~~~~~~~~~-~~~~Ga~g~~~g 201 (201)
T cd00945 140 EAGADFIKTSTGFGGGGATVEDVKLMKEAVGGRVGVKAAGGIKTLEDALA-AIEAGADGIGTS 201 (201)
T ss_pred HhCCCEEEeCCCCCCCCCCHHHHHHHHHhcccCCcEEEECCCCCHHHHHH-HHHhccceeecC
Confidence 899999999988 62 2 333332 2677788888 66665 588999999864
No 18
>cd08205 RuBisCO_IV_RLP Ribulose bisphosphate carboxylase like proteins, Rubisco-Form IV. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions, like for example 2,3-diketo-5-methylthiopentyl-1-phosphate enolase or 5-methyl
Probab=99.87 E-value=5.5e-22 Score=195.94 Aligned_cols=200 Identities=15% Similarity=0.179 Sum_probs=160.6
Q ss_pred cCCcccc-cCCceE--EeeecCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhC--
Q 018253 51 RTSAEDI-KALRLI--TAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFG-- 125 (359)
Q Consensus 51 ~~~~~~~-~~~Gi~--~al~TPF~~dg~ID~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~-- 125 (359)
++..+.+ ++.|+. |.+.|||++++.+|.+.+.++++++++.|+|+|...|++||+.+|+.+||.++++.+++.++
T Consensus 115 ~fGi~g~R~~~gv~~rPli~Ti~kp~~gld~~~la~~~~~l~~gGvD~Ikdde~~ge~~~~~~eER~~~v~~av~~a~~~ 194 (367)
T cd08205 115 RFGIEGLRRLLGVHDRPLLGTIIKPSIGLSPEELAELAYELALGGIDLIKDDELLADQPYAPFEERVRACMEAVRRANEE 194 (367)
T ss_pred CCCchhHHHHhCCCCCCeeeeeeCCCCCCCHHHHHHHHHHHHhcCCCeeeccccccCcccCCHHHHHHHHHHHHHHHHHh
Confidence 3444443 244543 68999999999999999999999999999999999999999999999999999999999887
Q ss_pred -CCcE-EEEecCCCCHHHHHHHHHHHHhCCCCEEEEcCCCCCCCCHHHHH--------HHHHH-----------------
Q 018253 126 -ASVK-VIGNTGSNSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLI--------SHFDS----------------- 178 (359)
Q Consensus 126 -grvp-Viagvg~~st~~ai~la~~a~~~Gadav~v~pP~y~~~s~~~l~--------~yf~~----------------- 178 (359)
|+.+ ++++++ .+++|+++++++|+++|+|++|+.+|+|+..+.+.+. .|+..
T Consensus 195 TG~~~~y~~nit-~~~~e~i~~a~~a~~~Gad~vmv~~~~~g~~~~~~l~~~~~lpi~~H~a~~ga~~~~~~~g~~~~~~ 273 (367)
T cd08205 195 TGRKTLYAPNIT-GDPDELRRRADRAVEAGANALLINPNLVGLDALRALAEDPDLPIMAHPAFAGALSRSPDYGSHFLLL 273 (367)
T ss_pred hCCcceEEEEcC-CCHHHHHHHHHHHHHcCCCEEEEecccccccHHHHHHhcCCCeEEEccCcccccccCCCCcCCHHHH
Confidence 5544 455555 5679999999999999999999999999865544444 44444
Q ss_pred --HHhc--CCeEEEeCCCCCCCCCCHHHHHHHhc--CCCeEEEecc----Cc--hh----hHhhhhCCceEEEecCCchh
Q 018253 179 --VLSM--GPTIIYNVPSRTGQDIPPRVIHTMAQ--SPNLAGVKEC----VG--ND----RVEHYTGNGIVVWSGNDDQC 242 (359)
Q Consensus 179 --Ia~a--~PiiiYn~P~~tg~~ls~e~l~~La~--~pnivGiK~s----s~--d~----~l~~~~~~~~~v~~G~d~~~ 242 (359)
+++. .|+++||+|. .++.++++.+.++++ .+++.++|.+ ++ +. ++.+..++++.++.|.+-+-
T Consensus 274 ~kl~RlaGad~~~~~~~~-gk~~~~~~~~~~la~~~~~~~~~iK~~~Pv~sgG~~~~~v~~l~~~~G~dv~~~~GGgi~g 352 (367)
T cd08205 274 GKLMRLAGADAVIFPGPG-GRFPFSREECLAIARACRRPLGGIKPALPVPSGGMHPGRVPELYRDYGPDVILLAGGGILG 352 (367)
T ss_pred HHHHHHcCCCccccCCCc-cCcCCCHHHHHHHHHHHhCccccCCCceeeccCCCCHHHHHHHHHHhCCcEEEEcCchhcC
Confidence 5664 6999999996 489999999999996 7999999997 42 21 34455678999999987666
Q ss_pred hhhhhhcCCc
Q 018253 243 HDARWNHGAT 252 (359)
Q Consensus 243 ~~~~l~~Ga~ 252 (359)
++.....|+.
T Consensus 353 Hp~g~~ag~~ 362 (367)
T cd08205 353 HPDGAAAGVR 362 (367)
T ss_pred CCCChHHHHH
Confidence 6654555543
No 19
>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage. Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to
Probab=99.64 E-value=2.3e-15 Score=141.17 Aligned_cols=146 Identities=14% Similarity=0.178 Sum_probs=128.0
Q ss_pred cCCcccc--cCCceEEeeecCCCCCCCC---CHHHHHHHHHHHHHCCCCEEEE--------ccCccCcCCCCHHHHHHHH
Q 018253 51 RTSAEDI--KALRLITAIKTPYLPDGRF---DLEAYDDLVNMQIVNGAEGMIV--------GGTTGEGQLMSWDEHIMLI 117 (359)
Q Consensus 51 ~~~~~~~--~~~Gi~~al~TPF~~dg~I---D~~~l~~li~~li~~Gv~Gl~v--------~GstGE~~~LT~~Er~~li 117 (359)
..++++| ..++|..+..+|+..|.+. |.+.+.+.++++++.|++|+.+ +|++||...+|.+|+.+.+
T Consensus 51 ~~~~~e~~~~~~~I~~~~~~Pv~~D~~~G~g~~~~~~~~v~~~~~~G~~gv~iED~~~~k~~g~~~~~~~~~~ee~~~ki 130 (243)
T cd00377 51 LLTLDEVLAAVRRIARAVDLPVIADADTGYGNALNVARTVRELEEAGAAGIHIEDQVGPKKCGHHGGKVLVPIEEFVAKI 130 (243)
T ss_pred cCCHHHHHHHHHHHHhhccCCEEEEcCCCCCCHHHHHHHHHHHHHcCCEEEEEecCCCCccccCCCCCeecCHHHHHHHH
Confidence 3455554 3677999999999999888 9999999999999999999999 9999999999999999999
Q ss_pred HHHHHhhCC--CcEEEEe-----cCCCCHHHHHHHHHHHHhCCCCEEEEcCCCCCCCCHHHHHHHHHHHHhc--CCeEEE
Q 018253 118 GHTVNCFGA--SVKVIGN-----TGSNSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSM--GPTIIY 188 (359)
Q Consensus 118 ~~~v~~~~g--rvpViag-----vg~~st~~ai~la~~a~~~Gadav~v~pP~y~~~s~~~l~~yf~~Ia~a--~PiiiY 188 (359)
+.+++...+ +++|+++ ++..+++++|++++.++++|||++++.+|. +. +++++++++ .|+++|
T Consensus 131 ~aa~~a~~~~~~~~IiARTDa~~~~~~~~~eai~Ra~ay~~AGAD~v~v~~~~----~~----~~~~~~~~~~~~Pl~~~ 202 (243)
T cd00377 131 KAARDARDDLPDFVIIARTDALLAGEEGLDEAIERAKAYAEAGADGIFVEGLK----DP----EEIRAFAEAPDVPLNVN 202 (243)
T ss_pred HHHHHHHhccCCeEEEEEcCchhccCCCHHHHHHHHHHHHHcCCCEEEeCCCC----CH----HHHHHHHhcCCCCEEEE
Confidence 999999887 8999999 665789999999999999999999998887 33 677777776 799999
Q ss_pred eCCCCCCCCCCHHHHHHH
Q 018253 189 NVPSRTGQDIPPRVIHTM 206 (359)
Q Consensus 189 n~P~~tg~~ls~e~l~~L 206 (359)
+.|... .++++.+.+|
T Consensus 203 ~~~~~~--~~~~~~l~~l 218 (243)
T cd00377 203 MTPGGN--LLTVAELAEL 218 (243)
T ss_pred ecCCCC--CCCHHHHHHC
Confidence 988532 5888888887
No 20
>cd08210 RLP_RrRLP Ribulose bisphosphate carboxylase like proteins (RLPs) similar to R.rubrum RLP. RLP from Rhodospirillum rubrum plays a role in an uncharacterized sulfur salvage pathway and has been shown to catalyze a novel isomerization reaction that converts 5-methylthio-d-ribulose 1-phosphate to a 3:1 mixture of 1-methylthioxylulose 5-phosphate and 1-methylthioribulose 5-phosphate.
Probab=99.60 E-value=7.2e-15 Score=145.01 Aligned_cols=186 Identities=10% Similarity=0.135 Sum_probs=152.8
Q ss_pred CceEEeeecCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhC----CCcEEEEecC
Q 018253 60 LRLITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFG----ASVKVIGNTG 135 (359)
Q Consensus 60 ~Gi~~al~TPF~~dg~ID~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~----grvpViagvg 135 (359)
+.++..++=| . -+|.+.+.+++.++...|+|+|-..+++||..+++.+||.+.+..+++.+. ++++++++++
T Consensus 126 rPl~~tiiKP---~-GL~~~~~a~~~~~~~~gGvD~IKdDe~l~~~~~~p~~eRv~~v~~av~~a~~eTG~~~~y~~Nit 201 (364)
T cd08210 126 RPLLCSALKP---Q-GLSAAELAELAYAFALGGIDIIKDDHGLADQPFAPFEERVKACQEAVAEANAETGGRTLYAPNVT 201 (364)
T ss_pred CceEEEEecc---c-cCCHHHHHHHHHHHHhcCCCeeecCccccCccCCCHHHHHHHHHHHHHHHHhhcCCcceEEEecC
Confidence 3366666655 3 499999999999999999999999999999999999999999999998776 7899999999
Q ss_pred CCCHHHHHHHHHHHHhCCCCEEEEcCCCCC-----CCCHHHH----HHH-------------------HHHHHhc--CCe
Q 018253 136 SNSTREAIHATEQGFAVGMHAALHINPYYG-----KTSLEGL----ISH-------------------FDSVLSM--GPT 185 (359)
Q Consensus 136 ~~st~~ai~la~~a~~~Gadav~v~pP~y~-----~~s~~~l----~~y-------------------f~~Ia~a--~Pi 185 (359)
+. +.|.+++++.|+++|++++|+.++.|+ ..+.+.. ..| |.++++. .|+
T Consensus 202 a~-~~em~~ra~~a~~~Ga~~vMv~~~~~G~~~~~~l~~~~~~l~i~aHra~~ga~~~~~~~is~~~~~~kl~RlaGad~ 280 (364)
T cd08210 202 GP-PTQLLERARFAKEAGAGGVLIAPGLTGLDTFRELAEDFDFLPILAHPAFAGAFVSSGDGISHALLFGTLFRLAGADA 280 (364)
T ss_pred CC-HHHHHHHHHHHHHcCCCEEEeecccchHHHHHHHHhcCCCcEEEEccccccccccCCCcccHHHHHHHHHHHhCCCE
Confidence 86 669999999999999999999999886 3444444 445 7888875 699
Q ss_pred EEEeCCCCCCCCCCHHHHHHHhc--CCCeEEEecc----Cc--h----hhHhhhhCCceEEEecCCchhhhhhhhcCC
Q 018253 186 IIYNVPSRTGQDIPPRVIHTMAQ--SPNLAGVKEC----VG--N----DRVEHYTGNGIVVWSGNDDQCHDARWNHGA 251 (359)
Q Consensus 186 iiYn~P~~tg~~ls~e~l~~La~--~pnivGiK~s----s~--d----~~l~~~~~~~~~v~~G~d~~~~~~~l~~Ga 251 (359)
++||+|. .++.++++.+.++++ .+++.++|.+ |+ + .++.+..++++.++.|.+-+-++.....|+
T Consensus 281 ~~~~~~~-g~~~~~~e~~~~ia~~~~~~~~~iK~~~Pv~sgG~~~~~v~~l~~~~G~Dvil~aGGgi~gHp~g~~ag~ 357 (364)
T cd08210 281 VIFPNYG-GRFGFSREECQAIADACRRPMGGLKPILPAPGGGMSVERAPEMVELYGPDVMLLIGGSLLRAGDDLTENT 357 (364)
T ss_pred EEeCCCc-CCccCCHHHHHHHHHHhcCCccccCCCcCcCCCCcCHHHHHHHHHHcCCcEEEEccccccCCCCChHHHH
Confidence 9999995 589999999999996 6889999997 42 2 134455678899999987666655444544
No 21
>TIGR02320 PEP_mutase phosphoenolpyruvate phosphomutase. A closely related enzyme, phosphonopyruvate hydrolase from Variovorax sp. Pal2, is excluded from this model.
Probab=99.43 E-value=4e-12 Score=121.71 Aligned_cols=149 Identities=13% Similarity=0.096 Sum_probs=121.7
Q ss_pred CCcccc--cCCceEEeeecC--CCCCCCCCHHHHHHHHHHHHHCCCCEEEE-----------ccCccCcCCCCHHHHHHH
Q 018253 52 TSAEDI--KALRLITAIKTP--YLPDGRFDLEAYDDLVNMQIVNGAEGMIV-----------GGTTGEGQLMSWDEHIML 116 (359)
Q Consensus 52 ~~~~~~--~~~Gi~~al~TP--F~~dg~ID~~~l~~li~~li~~Gv~Gl~v-----------~GstGE~~~LT~~Er~~l 116 (359)
.+++++ ..++|..++.+| +|.|+-.|...+.+.++++++.|+.|+.+ +|+.||...+|.+|+.+.
T Consensus 61 ~~~~e~~~~~~~I~~a~~~Pv~~D~d~Gg~~~~v~r~V~~l~~aGvaGi~iEDq~~pk~cg~~~~~~~~~l~s~ee~~~k 140 (285)
T TIGR02320 61 ASWTQRLDVVEFMFDVTTKPIILDGDTGGNFEHFRRLVRKLERRGVSAVCIEDKLGLKKNSLFGNDVAQPQASVEEFCGK 140 (285)
T ss_pred CCHHHHHHHHHHHHhhcCCCEEEecCCCCCHHHHHHHHHHHHHcCCeEEEEeccCCCccccccCCCCcccccCHHHHHHH
Confidence 444443 478899999999 77664499999999999999999999999 889999999999999999
Q ss_pred HHHHHHh-hCCCcEEEEe----cCCCCHHHHHHHHHHHHhCCCCEEEEcCCCCCCCCHHHHHHHHHHHHh---cCCeEEE
Q 018253 117 IGHTVNC-FGASVKVIGN----TGSNSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLS---MGPTIIY 188 (359)
Q Consensus 117 i~~~v~~-~~grvpViag----vg~~st~~ai~la~~a~~~Gadav~v~pP~y~~~s~~~l~~yf~~Ia~---a~PiiiY 188 (359)
++.+++. .+++++|++. +...+++++|++++.++++|||++++. +...+.+++.++++++.. ..|+++
T Consensus 141 I~Aa~~a~~~~~~~IiARTDa~~~~~~~~eAi~Ra~ay~eAGAD~ifv~---~~~~~~~ei~~~~~~~~~~~p~~pl~~- 216 (285)
T TIGR02320 141 IRAGKDAQTTEDFMIIARVESLILGKGMEDALKRAEAYAEAGADGIMIH---SRKKDPDEILEFARRFRNHYPRTPLVI- 216 (285)
T ss_pred HHHHHHhccCCCeEEEEecccccccCCHHHHHHHHHHHHHcCCCEEEec---CCCCCHHHHHHHHHHhhhhCCCCCEEE-
Confidence 9999987 5678999999 445679999999999999999999996 334689999999999875 358764
Q ss_pred eCCCCCCCCCCHHHHHHH
Q 018253 189 NVPSRTGQDIPPRVIHTM 206 (359)
Q Consensus 189 n~P~~tg~~ls~e~l~~L 206 (359)
+ |..++ .++.+.+.+|
T Consensus 217 ~-~~~~~-~~~~~eL~~l 232 (285)
T TIGR02320 217 V-PTSYY-TTPTDEFRDA 232 (285)
T ss_pred e-cCCCC-CCCHHHHHHc
Confidence 2 43222 3566666665
No 22
>PF06187 DUF993: Protein of unknown function (DUF993); InterPro: IPR009334 This entry consists of several hypothetical bacterial proteins of unknown function.; PDB: 4DNH_A.
Probab=98.34 E-value=1.4e-05 Score=76.85 Aligned_cols=260 Identities=17% Similarity=0.207 Sum_probs=152.7
Q ss_pred CCCCHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCC-CcEEEEecCCC--------CHHHHH-
Q 018253 74 GRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGA-SVKVIGNTGSN--------STREAI- 143 (359)
Q Consensus 74 g~ID~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~g-rvpViagvg~~--------st~~ai- 143 (359)
-.||+++.-++-++|-+.|..--=..-|.--+.-|.+..-++|++...++++. .-.|.+|+|.. +.++.+
T Consensus 53 aaiDWd~TlafR~~Lw~~GLgVAEAMDTAQRGMGLDW~~a~ELIrRs~aeA~~~g~~ia~GaGTD~L~~~~~~sld~V~~ 132 (382)
T PF06187_consen 53 AAIDWDATLAFRRHLWSLGLGVAEAMDTAQRGMGLDWAAARELIRRSAAEARAVGARIACGAGTDQLDPAPAASLDDVIA 132 (382)
T ss_dssp --B-HHHHHHHHHHHHHTT-EEEET-GGGTBTTTB-HHHHHHHHHHHHHHHHTSS--EEEEE--TTS---TT--HHHHHH
T ss_pred ccCCHHHHHHHHHHHHHccchHHHHhhhhhhcCCCChHHHHHHHHHHHHHHHhcCCcEEeecCcCCCCCCCCCCHHHHHH
Confidence 46999999999999999996544445566667789999999999999887652 23577787722 334333
Q ss_pred ---HHHHHHHhCCCCEEEEcCCCCC--CCCHHHHHHHHHHHHhc--CCeEEEeC-----CCCCCCC----C--CHHHHHH
Q 018253 144 ---HATEQGFAVGMHAALHINPYYG--KTSLEGLISHFDSVLSM--GPTIIYNV-----PSRTGQD----I--PPRVIHT 205 (359)
Q Consensus 144 ---~la~~a~~~Gadav~v~pP~y~--~~s~~~l~~yf~~Ia~a--~PiiiYn~-----P~~tg~~----l--s~e~l~~ 205 (359)
|+....++.|+..|+...-... ..++++..+-|.+|.+. .|||++=. |...|+- + ..+++.+
T Consensus 133 AY~eQ~~~ve~~Gg~~ILMASRaLA~~A~~p~DY~~VY~~lL~q~~~PVILHWLG~mFDPaL~GYWGs~d~~~A~~t~l~ 212 (382)
T PF06187_consen 133 AYEEQLEAVEAAGGRVILMASRALAAVARSPDDYLRVYDRLLSQADEPVILHWLGDMFDPALAGYWGSADLDAAMDTVLE 212 (382)
T ss_dssp HHHHHHHHHHHTT--EEE---HHHHHH--SHHHHHHHHHHHHHH-SS-EEEEEE-TTT-GGGTTTTS-SSHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCeEEEeehHHHHHhhCCHHHHHHHHHHHHHHcCCCEEEEecccccCcccccccCCCcHHHHHHHHHH
Confidence 4666778899876665433222 25789999999999875 69998753 6666662 2 2467777
Q ss_pred Hh-cC-CCeEEEeccCchh----hHhhhhCCceEEEecCCchhhhhhhhcC-----CceeecccccccHHHHHHHH--Hc
Q 018253 206 MA-QS-PNLAGVKECVGND----RVEHYTGNGIVVWSGNDDQCHDARWNHG-----ATGVISVTSNLVPGMMRELM--FG 272 (359)
Q Consensus 206 La-~~-pnivGiK~ss~d~----~l~~~~~~~~~v~~G~d~~~~~~~l~~G-----a~G~is~~an~~P~l~~~l~--~a 272 (359)
|. ++ +.|-|||.|.-|. .+++....++++|+|+|- -++. |..| .+...+...-+.|.....+- .+
T Consensus 213 lI~~~~~kVdGIKiSLLD~~~Ei~lRrrLP~gVr~YTGDDF-nYpe-LI~GD~~g~S~ALLGIFdaiAPaAsaAl~~Ld~ 290 (382)
T PF06187_consen 213 LIAAHADKVDGIKISLLDAEKEIALRRRLPEGVRMYTGDDF-NYPE-LIAGDGQGHSHALLGIFDAIAPAASAALAALDA 290 (382)
T ss_dssp HHHHTGGGEEEEEEES--HHHHHHHHTS--TT-EEEE--TT-THHH-HHH--SS---EEEESHHHHTHHHHHHHHHHHHT
T ss_pred HHHhChhhcCeeEecccCcHHHHHHHHhCCccceeecCCCc-CcHH-HhcCCCCCccHHHhhcchhhchHHHHHHHHHhC
Confidence 76 44 6899999999883 456666889999999864 4455 7788 67677766778888877765 47
Q ss_pred CCcH---HHHHHHHHHHHHHhcCCChHHHHH----HHHHcCCCCCCCCCCC---CCCCHHHHHHHHHHHHHcCcc
Q 018253 273 GKNP---SLNTKLFPLIEWLFQEPNPIPLNT----ALAQLGVVRPVFRLPY---VPLPQEKRAEFVNLVNQIGRE 337 (359)
Q Consensus 273 g~a~---~l~~~l~~l~~~l~~~~~~~~~K~----al~~~G~~~g~~R~Pl---~~l~~e~~~~i~~~l~~lgl~ 337 (359)
|+.. ++.+--.||-..+|..|.. .+|. ..++-|.-. ..+..- ..=+-....++-++..+.|+.
T Consensus 291 gd~~~f~~il~pTvpLsRhiF~aPT~-~YKtGvvFLAwLnGhQ~-hF~MvgG~qsaRs~~hla~~frLAD~agll 363 (382)
T PF06187_consen 291 GDTAGFRAILDPTVPLSRHIFRAPTR-YYKTGVVFLAWLNGHQD-HFTMVGGLQSARSLPHLAELFRLADQAGLL 363 (382)
T ss_dssp T-HHHHHHHHTTHHHHHHHHT-SSGG-GHHHHHHHHHHHTTSSS-----GGGGGGSS-HHHHHHHHHHHHHTT--
T ss_pred CCHHHHHHHhccchHhHHHhhcCCch-hhhhhHHHHHHHcCCCc-cceecCccccccchHHHHHHHHHHhhhCCC
Confidence 7643 5556666888888876532 2343 334445421 122211 111233456666666776654
No 23
>PF13714 PEP_mutase: Phosphoenolpyruvate phosphomutase; PDB: 1ZLP_A 3EOO_C 1UJQ_D 1O5Q_A 2DUA_A 2HJP_A 2HRW_A 2QIW_A 3KZ2_B 3IH1_B ....
Probab=97.73 E-value=0.0014 Score=61.59 Aligned_cols=120 Identities=21% Similarity=0.206 Sum_probs=89.0
Q ss_pred CHHHHHHHHHHHHHCCCCEEEEccC---ccCcCCCCHHHHHHHHHHHHHhhCC-CcEEEEecCC-----CCHHHHHHHHH
Q 018253 77 DLEAYDDLVNMQIVNGAEGMIVGGT---TGEGQLMSWDEHIMLIGHTVNCFGA-SVKVIGNTGS-----NSTREAIHATE 147 (359)
Q Consensus 77 D~~~l~~li~~li~~Gv~Gl~v~Gs---tGE~~~LT~~Er~~li~~~v~~~~g-rvpViagvg~-----~st~~ai~la~ 147 (359)
|.....+.++.+++.|+.|+.+=-. .+....++.+|..+=++.+++.... +.-|++=+-+ .+.+|+|++++
T Consensus 83 ~~~~v~~tv~~~~~aG~agi~IEDq~~~~~~~~l~~~ee~~~kI~Aa~~a~~~~~~~I~ARTDa~~~~~~~~deaI~R~~ 162 (238)
T PF13714_consen 83 DPENVARTVRELERAGAAGINIEDQRCGHGGKQLVSPEEMVAKIRAAVDARRDPDFVIIARTDAFLRAEEGLDEAIERAK 162 (238)
T ss_dssp SHHHHHHHHHHHHHCT-SEEEEESBSTTTSTT-B--HHHHHHHHHHHHHHHSSTTSEEEEEECHHCHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHcCCcEEEeeccccCCCCCceeCHHHHHHHHHHHHHhccCCeEEEEEeccccccCCCCHHHHHHHHH
Confidence 4889999999999999999998433 3777788999999999999997653 4556665544 46899999999
Q ss_pred HHHhCCCCEEEEcCCCCCCCCHHHHHHHHHHHHhcCCeEEEeCCCCCCCCCCHHHHHHH
Q 018253 148 QGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSMGPTIIYNVPSRTGQDIPPRVIHTM 206 (359)
Q Consensus 148 ~a~~~Gadav~v~pP~y~~~s~~~l~~yf~~Ia~a~PiiiYn~P~~tg~~ls~e~l~~L 206 (359)
.+.++|||++++..+ .+.+++.++-+++ ..|+.+--.| ..++.+.+.+|
T Consensus 163 aY~eAGAD~ifi~~~----~~~~~i~~~~~~~--~~Pl~v~~~~----~~~~~~eL~~l 211 (238)
T PF13714_consen 163 AYAEAGADMIFIPGL----QSEEEIERIVKAV--DGPLNVNPGP----GTLSAEELAEL 211 (238)
T ss_dssp HHHHTT-SEEEETTS----SSHHHHHHHHHHH--SSEEEEETTS----SSS-HHHHHHT
T ss_pred HHHHcCCCEEEeCCC----CCHHHHHHHHHhc--CCCEEEEcCC----CCCCHHHHHHC
Confidence 999999999998655 5677777777777 3786665433 24888888877
No 24
>PRK11320 prpB 2-methylisocitrate lyase; Provisional
Probab=97.69 E-value=0.0023 Score=61.83 Aligned_cols=137 Identities=18% Similarity=0.155 Sum_probs=92.1
Q ss_pred eEEeeecCCCCC---CCCCHHHHHHHHHHHHHCCCCEEEE--------ccCccCcCCCCHHHHHHHHHHHHHhhCC-CcE
Q 018253 62 LITAIKTPYLPD---GRFDLEAYDDLVNMQIVNGAEGMIV--------GGTTGEGQLMSWDEHIMLIGHTVNCFGA-SVK 129 (359)
Q Consensus 62 i~~al~TPF~~d---g~ID~~~l~~li~~li~~Gv~Gl~v--------~GstGE~~~LT~~Er~~li~~~v~~~~g-rvp 129 (359)
|.-++-.|...| |==|.....+.++.+++.|+.|+.+ ||..+.-...+.+|..+-++.+++...+ +.-
T Consensus 73 I~~~~~iPviaD~d~GyG~~~~v~r~V~~~~~aGaagi~IEDq~~pK~cg~~~~~~lv~~ee~~~kI~Aa~~a~~~~d~~ 152 (292)
T PRK11320 73 ITDACDLPLLVDIDTGFGGAFNIARTVKSMIKAGAAAVHIEDQVGAKRCGHRPNKEIVSQEEMVDRIKAAVDARTDPDFV 152 (292)
T ss_pred HHhccCCCEEEECCCCCCCHHHHHHHHHHHHHcCCeEEEEecCCCccccCCCCCCcccCHHHHHHHHHHHHHhccCCCeE
Confidence 333444455443 3238899999999999999999998 4544444567999999999999886543 233
Q ss_pred EEEecC---CCCHHHHHHHHHHHHhCCCCEEEEcCCCCCCCCHHHHHHHHHHHHhcCCeEE--EeCCCCCCCCCCHHHHH
Q 018253 130 VIGNTG---SNSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSMGPTII--YNVPSRTGQDIPPRVIH 204 (359)
Q Consensus 130 Viagvg---~~st~~ai~la~~a~~~Gadav~v~pP~y~~~s~~~l~~yf~~Ia~a~Piii--Yn~P~~tg~~ls~e~l~ 204 (359)
|++=+- ....+|+|++++.++++|||.+++..| .+.+++.++-+.+ ..|++. ...+ .+ -.++.+.+.
T Consensus 153 IiARTDa~~~~g~deAI~Ra~aY~eAGAD~ifi~~~----~~~~~i~~~~~~~--~~Pl~~n~~~~~-~~-p~~s~~~L~ 224 (292)
T PRK11320 153 IMARTDALAVEGLDAAIERAQAYVEAGADMIFPEAM----TELEMYRRFADAV--KVPILANITEFG-AT-PLFTTEELA 224 (292)
T ss_pred EEEecCcccccCHHHHHHHHHHHHHcCCCEEEecCC----CCHHHHHHHHHhc--CCCEEEEeccCC-CC-CCCCHHHHH
Confidence 444332 235899999999999999999998643 3667766655544 268633 2222 11 135666666
Q ss_pred HH
Q 018253 205 TM 206 (359)
Q Consensus 205 ~L 206 (359)
+|
T Consensus 225 ~l 226 (292)
T PRK11320 225 SA 226 (292)
T ss_pred Hc
Confidence 65
No 25
>TIGR02317 prpB methylisocitrate lyase. Members of this family are methylisocitrate lyase, also called (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate pyruvate-lyase. This enzyme acts in propionate metabolism. It cleaves a carbon-carbon bond to convert 2-methylisocitrate to pyruvate plus succinate. Some members of this family have been annotated, incorrectly it seems, as the related protein carboxyphosphoenolpyruvate phosphomutase, which is involved in synthesizing the antibiotic bialaphos in Streptomyces hygroscopicus.
Probab=97.47 E-value=0.0059 Score=58.80 Aligned_cols=132 Identities=19% Similarity=0.154 Sum_probs=87.3
Q ss_pred ecCCCCC---CCCCHHHHHHHHHHHHHCCCCEEEEc--------cCccCcCCCCHHHHHHHHHHHHHhhCC-CcEEEEec
Q 018253 67 KTPYLPD---GRFDLEAYDDLVNMQIVNGAEGMIVG--------GTTGEGQLMSWDEHIMLIGHTVNCFGA-SVKVIGNT 134 (359)
Q Consensus 67 ~TPF~~d---g~ID~~~l~~li~~li~~Gv~Gl~v~--------GstGE~~~LT~~Er~~li~~~v~~~~g-rvpViagv 134 (359)
-.|...| |==+.....+.++.+++.|+.|+.+= |..+--...+.+|..+-++.+++...+ +.-|++=+
T Consensus 73 ~iPviaD~d~GyG~~~~v~~tv~~~~~aG~agi~IEDq~~pK~cgh~~g~~lv~~ee~~~kI~Aa~~a~~~~d~~IiART 152 (285)
T TIGR02317 73 DLPLLVDADTGFGEAFNVARTVREMEDAGAAAVHIEDQVLPKRCGHLPGKELVSREEMVDKIAAAVDAKRDEDFVIIART 152 (285)
T ss_pred CCCEEEECCCCCCCHHHHHHHHHHHHHcCCeEEEEecCCCccccCCCCCccccCHHHHHHHHHHHHHhccCCCEEEEEEc
Confidence 3455433 43457888899999999999999984 443333456999999999999886653 23333433
Q ss_pred C---CCCHHHHHHHHHHHHhCCCCEEEEcCCCCCCCCHHHHHHHHHHHHhcCCeEE--EeCCCCCCCCCCHHHHHHH
Q 018253 135 G---SNSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSMGPTII--YNVPSRTGQDIPPRVIHTM 206 (359)
Q Consensus 135 g---~~st~~ai~la~~a~~~Gadav~v~pP~y~~~s~~~l~~yf~~Ia~a~Piii--Yn~P~~tg~~ls~e~l~~L 206 (359)
- ....+++|++++.+.++|||.+++.. ..+.+++.++-+++- .|+++ ...+ .+ -.++.+.+.+|
T Consensus 153 Da~~~~g~deAI~Ra~ay~~AGAD~vfi~g----~~~~e~i~~~~~~i~--~Pl~~n~~~~~-~~-p~~s~~eL~~l 221 (285)
T TIGR02317 153 DARAVEGLDAAIERAKAYVEAGADMIFPEA----LTSLEEFRQFAKAVK--VPLLANMTEFG-KT-PLFTADELREA 221 (285)
T ss_pred CcccccCHHHHHHHHHHHHHcCCCEEEeCC----CCCHHHHHHHHHhcC--CCEEEEeccCC-CC-CCCCHHHHHHc
Confidence 2 23589999999999999999999853 236677665555442 57632 2111 11 13566666665
No 26
>TIGR02319 CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phosphorylmutase. This family consists of carboxyvinyl-carboxyphosphonate phosphorylmutase (CPEP phosphonomutase), an unusual enzyme involved in the biosynthesis of the antibiotic bialaphos. So far, it is known only in that pathway and only in Streptomyces hygroscopicus. Some related proteins annotated as being functionally equivalent are likely misannotated examples of methylisocitrate lyase, an enzyme of priopionate utilization.
Probab=97.27 E-value=0.013 Score=56.71 Aligned_cols=138 Identities=17% Similarity=0.137 Sum_probs=89.6
Q ss_pred eEEeeecCCCCC---CCCCHHHHHHHHHHHHHCCCCEEEEcc--------CccCcCCCCHHHHHHHHHHHHHhhCC-CcE
Q 018253 62 LITAIKTPYLPD---GRFDLEAYDDLVNMQIVNGAEGMIVGG--------TTGEGQLMSWDEHIMLIGHTVNCFGA-SVK 129 (359)
Q Consensus 62 i~~al~TPF~~d---g~ID~~~l~~li~~li~~Gv~Gl~v~G--------stGE~~~LT~~Er~~li~~~v~~~~g-rvp 129 (359)
|.-++-.|...| |==+.....+.++.+++.|+.||.+=- ..+--...+.+|..+-++.+++.... ..-
T Consensus 72 I~~~~~lPv~aD~dtGyG~~~~v~r~V~~~~~aGaagi~IEDq~~pK~cg~~~~k~lv~~ee~~~kI~Aa~~A~~~~d~~ 151 (294)
T TIGR02319 72 IVLAVDVPVIMDADAGYGNAMSVWRATREFERVGIVGYHLEDQVNPKRCGHLEGKRLISTEEMTGKIEAAVEAREDEDFT 151 (294)
T ss_pred HHhccCCCEEEECCCCCCCcHHHHHHHHHHHHcCCeEEEEECCCCccccCCCCCccccCHHHHHHHHHHHHHhccCCCeE
Confidence 444445566544 323444478999999999999999844 33433467999999999998886543 233
Q ss_pred EEEec---CCCCHHHHHHHHHHHHhCCCCEEEEcCCCCCCCCHHHHHHHHHHHHhcCCeEEEeCCCCCCC-CCCHHHHHH
Q 018253 130 VIGNT---GSNSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSMGPTIIYNVPSRTGQ-DIPPRVIHT 205 (359)
Q Consensus 130 Viagv---g~~st~~ai~la~~a~~~Gadav~v~pP~y~~~s~~~l~~yf~~Ia~a~PiiiYn~P~~tg~-~ls~e~l~~ 205 (359)
|++=+ .....+++|++++.+.++|||++++-- ..+.+++.++-+.+. .|++ .|.=..++. .++.+.+.+
T Consensus 152 I~ARTDa~~~~g~deaI~Ra~aY~eAGAD~ifi~~----~~~~~ei~~~~~~~~--~P~~-~nv~~~~~~p~~s~~eL~~ 224 (294)
T TIGR02319 152 IIARTDARESFGLDEAIRRSREYVAAGADCIFLEA----MLDVEEMKRVRDEID--APLL-ANMVEGGKTPWLTTKELES 224 (294)
T ss_pred EEEEecccccCCHHHHHHHHHHHHHhCCCEEEecC----CCCHHHHHHHHHhcC--CCee-EEEEecCCCCCCCHHHHHH
Confidence 44432 234689999999999999999999843 356777766665542 5762 222111122 356666666
Q ss_pred H
Q 018253 206 M 206 (359)
Q Consensus 206 L 206 (359)
|
T Consensus 225 l 225 (294)
T TIGR02319 225 I 225 (294)
T ss_pred c
Confidence 5
No 27
>PRK15063 isocitrate lyase; Provisional
Probab=97.20 E-value=0.0079 Score=60.59 Aligned_cols=126 Identities=18% Similarity=0.147 Sum_probs=91.5
Q ss_pred HHHHHHHHHHHHHCCCCEEEE---------ccCccCcCCCCHHHHHHHHHHHHHhhC---CCcEEEEecCC---------
Q 018253 78 LEAYDDLVNMQIVNGAEGMIV---------GGTTGEGQLMSWDEHIMLIGHTVNCFG---ASVKVIGNTGS--------- 136 (359)
Q Consensus 78 ~~~l~~li~~li~~Gv~Gl~v---------~GstGE~~~LT~~Er~~li~~~v~~~~---grvpViagvg~--------- 136 (359)
.....++++.++++|+.||-+ ||..|--...+.+|..+-+.+++.... ...-||+=+-+
T Consensus 160 ~~nv~~~vk~~ieAGaAGIhiEDQ~~~~KkCGH~~GK~Lvp~~e~i~kL~AAr~A~d~~g~~~vIiARTDA~aa~li~s~ 239 (428)
T PRK15063 160 VLNAFELMKAMIEAGAAGVHFEDQLASEKKCGHMGGKVLVPTQEAIRKLVAARLAADVMGVPTLVIARTDAEAADLLTSD 239 (428)
T ss_pred cHHHHHHHHHHHHcCCeEEEEeCCCCCccccCCCCCCeeecHHHHHHHHHHHHHHHHhcCCCeEEEEECCcccccccccc
Confidence 344889999999999999988 666665557899998888888877543 22334444444
Q ss_pred ----------------------CCHHHHHHHHHHHHhCCCCEEEEcCCCCCCCCHHHHHHHHHHHHhcCC--eEEEeC-C
Q 018253 137 ----------------------NSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSMGP--TIIYNV-P 191 (359)
Q Consensus 137 ----------------------~st~~ai~la~~a~~~Gadav~v~pP~y~~~s~~~l~~yf~~Ia~a~P--iiiYn~-P 191 (359)
..++++|++++.+.+ |||.+.+-.. .++.+++.++-+.|....| ++.||. |
T Consensus 240 ~d~rD~~fi~g~r~~eg~y~~~~Gld~AI~Ra~AYa~-GAD~iw~Et~---~~d~ee~~~fa~~v~~~~P~~~layn~sP 315 (428)
T PRK15063 240 VDERDRPFITGERTAEGFYRVKAGIEQAIARGLAYAP-YADLIWCETS---TPDLEEARRFAEAIHAKFPGKLLAYNCSP 315 (428)
T ss_pred ccccccccccCCCccccccccccCHHHHHHHHHHHhc-CCCEEEeCCC---CCCHHHHHHHHHhhcccCccceeecCCCC
Confidence 358999999999999 9999977532 2678888888888865568 889984 5
Q ss_pred CCC-CCCCCHHHHHHHh
Q 018253 192 SRT-GQDIPPRVIHTMA 207 (359)
Q Consensus 192 ~~t-g~~ls~e~l~~La 207 (359)
+.+ ...++++++++..
T Consensus 316 sfnW~~~~~~~~~~~f~ 332 (428)
T PRK15063 316 SFNWKKNLDDATIAKFQ 332 (428)
T ss_pred CcccccccCHHHHHHHH
Confidence 533 2347777766553
No 28
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed
Probab=97.14 E-value=0.016 Score=57.01 Aligned_cols=83 Identities=17% Similarity=0.130 Sum_probs=62.6
Q ss_pred CCHHHHHHHHHHHHHhhCCCcEEEEecCCCCHHHHHHHHHHHHhCCCCEEEE---cCCCCCC---CCH-HHHHHHHHHHH
Q 018253 108 MSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALH---INPYYGK---TSL-EGLISHFDSVL 180 (359)
Q Consensus 108 LT~~Er~~li~~~v~~~~grvpViagvg~~st~~ai~la~~a~~~Gadav~v---~pP~y~~---~s~-~~l~~yf~~Ia 180 (359)
...+++.+.++.+.+.. ++||+++++..+.++..+.++.++++|+|++.+ .||.... .+. +.+.+..++|.
T Consensus 84 ~g~d~~~~~i~~~~~~~--~~pvi~sI~g~~~~e~~~~a~~~~~agad~ielN~scpp~~~~~~g~~~~~~~~eil~~v~ 161 (334)
T PRK07565 84 VGPEEYLELIRRAKEAV--DIPVIASLNGSSAGGWVDYARQIEQAGADALELNIYYLPTDPDISGAEVEQRYLDILRAVK 161 (334)
T ss_pred cCHHHHHHHHHHHHHhc--CCcEEEEeccCCHHHHHHHHHHHHHcCCCEEEEeCCCCCCCCCCccccHHHHHHHHHHHHH
Confidence 55788998888776655 479999999999999999999999999999988 5564321 111 23455556666
Q ss_pred hc--CCeEEEeCCC
Q 018253 181 SM--GPTIIYNVPS 192 (359)
Q Consensus 181 ~a--~PiiiYn~P~ 192 (359)
+. .||++.-.|.
T Consensus 162 ~~~~iPV~vKl~p~ 175 (334)
T PRK07565 162 SAVSIPVAVKLSPY 175 (334)
T ss_pred hccCCcEEEEeCCC
Confidence 65 6999997763
No 29
>TIGR02321 Pphn_pyruv_hyd phosphonopyruvate hydrolase. This family consists of phosphonopyruvate hydrolase, an enzyme closely related to phosphoenolpyruvate phosphomutase. It cleaves the direct C-P bond of phosphonopyruvate. The characterized example is from Variovorax sp. Pal2.
Probab=97.12 E-value=0.022 Score=55.06 Aligned_cols=141 Identities=16% Similarity=0.207 Sum_probs=93.4
Q ss_pred eEEeeecCCCCC---CCCCHHHHHHHHHHHHHCCCCEEEEccCc--------cCc--CCCCHHHHHHHHHHHHHhhCC-C
Q 018253 62 LITAIKTPYLPD---GRFDLEAYDDLVNMQIVNGAEGMIVGGTT--------GEG--QLMSWDEHIMLIGHTVNCFGA-S 127 (359)
Q Consensus 62 i~~al~TPF~~d---g~ID~~~l~~li~~li~~Gv~Gl~v~Gst--------GE~--~~LT~~Er~~li~~~v~~~~g-r 127 (359)
|.-++--|...| |-=|.....+.|+.+++.|+.|+.+=-.+ .++ ...+.+|..+-++.+++...+ +
T Consensus 70 I~~~~~lPv~aD~d~GyG~~~~v~~tV~~~~~aGvagi~IEDq~~pk~cg~~~~g~~~l~~~ee~~~kI~Aa~~a~~~~d 149 (290)
T TIGR02321 70 IASTVSIPLIADIDTGFGNAVNVHYVVPQYEAAGASAIVMEDKTFPKDTSLRTDGRQELVRIEEFQGKIAAATAARADRD 149 (290)
T ss_pred HHhccCCCEEEECCCCCCCcHHHHHHHHHHHHcCCeEEEEeCCCCCcccccccCCCccccCHHHHHHHHHHHHHhCCCCC
Confidence 344444566544 33344468999999999999999984432 133 356899999999888876432 2
Q ss_pred cEEEEecC----CCCHHHHHHHHHHHHhCCCCEEEEcCCCCCCCCHHHHHHHHHHHHhcCCeEEEeCCCCCCCCCCHHHH
Q 018253 128 VKVIGNTG----SNSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSMGPTIIYNVPSRTGQDIPPRVI 203 (359)
Q Consensus 128 vpViagvg----~~st~~ai~la~~a~~~Gadav~v~pP~y~~~s~~~l~~yf~~Ia~a~PiiiYn~P~~tg~~ls~e~l 203 (359)
.-|++=+- ..+.+|+|++++.+.++|||++++-.|. .+.+++.+.-+.+.--+|+++- |. .+-.++.+.+
T Consensus 150 ~~I~ARTDa~~~~~g~deAI~Ra~aY~eAGAD~ifv~~~~---~~~~ei~~~~~~~~~p~pv~~~--~~-~~p~~~~~~l 223 (290)
T TIGR02321 150 FVVIARVEALIAGLGQQEAVRRGQAYEEAGADAILIHSRQ---KTPDEILAFVKSWPGKVPLVLV--PT-AYPQLTEADI 223 (290)
T ss_pred EEEEEEeccccccCCHHHHHHHHHHHHHcCCCEEEecCCC---CCHHHHHHHHHhcCCCCCeEEe--cC-CCCCCCHHHH
Confidence 33344332 2357999999999999999999985322 4678888877776433687643 32 2334677777
Q ss_pred HHHhc
Q 018253 204 HTMAQ 208 (359)
Q Consensus 204 ~~La~ 208 (359)
.+|.+
T Consensus 224 ~~lg~ 228 (290)
T TIGR02321 224 AALSK 228 (290)
T ss_pred HHhcC
Confidence 77643
No 30
>cd06556 ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme superfamily catalyze the formation and cleavage of either P-C or C-C bonds. Typical members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), 2-methylisocitrate lyase (MICL), and ketopantoate hydroxymethyltransferase (KPHMT).
Probab=96.98 E-value=0.013 Score=54.97 Aligned_cols=111 Identities=17% Similarity=0.096 Sum_probs=76.1
Q ss_pred CHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCC------------------CC
Q 018253 77 DLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGS------------------NS 138 (359)
Q Consensus 77 D~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~------------------~s 138 (359)
+.+...+.+..+++.|++|+-+=+.. |..+.++.+++. .++|++.++. .+
T Consensus 87 ~~~~~~~~~~~l~~aGa~gv~iED~~---------~~~~~i~ai~~a---~i~ViaRtd~~pq~~~~~gg~~~~~~~~~~ 154 (240)
T cd06556 87 APTAAFELAKTFMRAGAAGVKIEGGE---------WHIETLQMLTAA---AVPVIAHTGLTPQSVNTSGGDEGQYRGDEA 154 (240)
T ss_pred CHHHHHHHHHHHHHcCCcEEEEcCcH---------HHHHHHHHHHHc---CCeEEEEeCCchhhhhccCCceeeccCHHH
Confidence 44778889999999999999998853 555556665543 3899999886 34
Q ss_pred HHHHHHHHHHHHhCCCCEEEEcCCCCCCCCHHHHHHHHHHHHhcCCeEEEeCC-CCCCCCCCHHHHHHH
Q 018253 139 TREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSMGPTIIYNVP-SRTGQDIPPRVIHTM 206 (359)
Q Consensus 139 t~~ai~la~~a~~~Gadav~v~pP~y~~~s~~~l~~yf~~Ia~a~PiiiYn~P-~~tg~~ls~e~l~~L 206 (359)
.+++|+.++.++++|||++++--+ +.+++.+..+.+ ..|++..=.| ...|+-+....+.-+
T Consensus 155 ~~~ai~Ra~ay~~AGAd~i~~e~~-----~~e~~~~i~~~~--~~P~~~~gag~~~dgq~lv~~d~lg~ 216 (240)
T cd06556 155 GEQLIADALAYAPAGADLIVMECV-----PVELAKQITEAL--AIPLAGIGAGSGTDGQFLVLADAFGI 216 (240)
T ss_pred HHHHHHHHHHHHHcCCCEEEEcCC-----CHHHHHHHHHhC--CCCEEEEecCcCCCceEEeHHhhhcc
Confidence 779999999999999999998533 445544433332 2687654343 334555554444433
No 31
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=96.31 E-value=0.7 Score=42.41 Aligned_cols=183 Identities=12% Similarity=0.039 Sum_probs=98.8
Q ss_pred CceEEeeecCCCCCCCCCH-HHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecC-C-
Q 018253 60 LRLITAIKTPYLPDGRFDL-EAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTG-S- 136 (359)
Q Consensus 60 ~Gi~~al~TPF~~dg~ID~-~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg-~- 136 (359)
+|++...-+- +++-|+. +...+++..+.+.|+.|+-+.+ .+.++.+.+.+ .+|++.=+. .
T Consensus 5 ~~~~~~~~~~--~~~~~~~~~~~~~~a~a~~~~G~~~~~~~~-------------~~~i~~i~~~~--~~Pil~~~~~d~ 67 (221)
T PRK01130 5 GGLIVSCQAL--PGEPLHSPEIMAAMALAAVQGGAVGIRANG-------------VEDIKAIRAVV--DVPIIGIIKRDY 67 (221)
T ss_pred CCEEEEecCC--CCCCCCCHHHHHHHHHHHHHCCCeEEEcCC-------------HHHHHHHHHhC--CCCEEEEEecCC
Confidence 5666655543 4555655 4568889989999999988631 34555555544 578762111 0
Q ss_pred ----CCHHHHHHHHHHHHhCCCCEEEEcCCCCCCCCHHHHHHHHHHHHh-c-CCeEEEeCCCCCCCCCCHHHHHHHhcC-
Q 018253 137 ----NSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLS-M-GPTIIYNVPSRTGQDIPPRVIHTMAQS- 209 (359)
Q Consensus 137 ----~st~~ai~la~~a~~~Gadav~v~pP~y~~~s~~~l~~yf~~Ia~-a-~PiiiYn~P~~tg~~ls~e~l~~La~~- 209 (359)
.-.....+.++.+.++|||.+++..|.-..++.+++.++++.+.+ . .|++.- ..+.+.+.++.+.
T Consensus 68 ~~~~~~~~~~~~~v~~a~~aGad~I~~d~~~~~~p~~~~~~~~i~~~~~~~~i~vi~~--------v~t~ee~~~a~~~G 139 (221)
T PRK01130 68 PDSEVYITPTLKEVDALAAAGADIIALDATLRPRPDGETLAELVKRIKEYPGQLLMAD--------CSTLEEGLAAQKLG 139 (221)
T ss_pred CCCCceECCCHHHHHHHHHcCCCEEEEeCCCCCCCCCCCHHHHHHHHHhCCCCeEEEe--------CCCHHHHHHHHHcC
Confidence 000012356789999999988877665433322344445555544 3 565532 1255666665543
Q ss_pred CCeEEEe----------ccCchh----hHhhhhCCceEEEecCC-chhhhhhhhcCCceeecccccccHHHHH
Q 018253 210 PNLAGVK----------ECVGND----RVEHYTGNGIVVWSGND-DQCHDARWNHGATGVISVTSNLVPGMMR 267 (359)
Q Consensus 210 pnivGiK----------~ss~d~----~l~~~~~~~~~v~~G~d-~~~~~~~l~~Ga~G~is~~an~~P~l~~ 267 (359)
..++++- ....+. +++...+-.+..-.|-. ..-+...+..|++|++.|.+-+-|....
T Consensus 140 ~d~i~~~~~g~t~~~~~~~~~~~~~i~~i~~~~~iPvia~GGI~t~~~~~~~l~~GadgV~iGsai~~~~~~~ 212 (221)
T PRK01130 140 FDFIGTTLSGYTEETKKPEEPDFALLKELLKAVGCPVIAEGRINTPEQAKKALELGAHAVVVGGAITRPEEIT 212 (221)
T ss_pred CCEEEcCCceeecCCCCCCCcCHHHHHHHHHhCCCCEEEECCCCCHHHHHHHHHCCCCEEEEchHhcCCHHHH
Confidence 2333331 111111 22222222233333442 2223445789999999887765555433
No 32
>COG1830 FbaB DhnA-type fructose-1,6-bisphosphate aldolase and related enzymes [Carbohydrate transport and metabolism]
Probab=96.30 E-value=0.18 Score=47.82 Aligned_cols=165 Identities=15% Similarity=0.197 Sum_probs=107.3
Q ss_pred CHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCCC-------HHHHHHHHHHH
Q 018253 77 DLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNS-------TREAIHATEQG 149 (359)
Q Consensus 77 D~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~s-------t~~ai~la~~a 149 (359)
+++-.+..++.+.+.|++++... .-+++....-.+.++|+|+..++.+ -+..+-..+.|
T Consensus 41 gl~d~e~~v~~v~~~g~dav~~~--------------~G~~~~~~~~y~~dvplivkl~~~t~l~~~~~~~~~~~~ve~a 106 (265)
T COG1830 41 GLEDPENIVAKVAEAGADAVAMT--------------PGIARSVHRGYAHDVPLIVKLNGSTSLSPDPNDQVLVATVEDA 106 (265)
T ss_pred cccCHHHHHHHHHhcCCCEEEec--------------HhHHhhcCccccCCcCEEEEeccccccCCCcccceeeeeHHHH
Confidence 66677888999999999998742 3345555555666899999887651 33455567788
Q ss_pred HhCCCCEEEEcCCCCCCCCHHHHHHHHHHHHh-c----CCeEEEeCCCCCCC----CCCHHHHH---HHh-cC-CCeEEE
Q 018253 150 FAVGMHAALHINPYYGKTSLEGLISHFDSVLS-M----GPTIIYNVPSRTGQ----DIPPRVIH---TMA-QS-PNLAGV 215 (359)
Q Consensus 150 ~~~Gadav~v~pP~y~~~s~~~l~~yf~~Ia~-a----~PiiiYn~P~~tg~----~ls~e~l~---~La-~~-pnivGi 215 (359)
.++|||||.+.-. ++..++.+.++-+.++.+ + +|++++=.|.-.++ ..+++.+. ||+ ++ -.|+=.
T Consensus 107 i~lgadAV~~~Vy-~Gse~e~~~i~~~~~v~~~a~~~Gmp~v~~~YpRg~~~~~~~~~d~~~v~~aaRlaaelGADIiK~ 185 (265)
T COG1830 107 IRLGADAVGATVY-VGSETEREMIENISQVVEDAHELGMPLVAWAYPRGPAIKDEYHRDADLVGYAARLAAELGADIIKT 185 (265)
T ss_pred HhCCCcEEEEEEe-cCCcchHHHHHHHHHHHHHHHHcCCceEEEEeccCCcccccccccHHHHHHHHHHHHHhcCCeEee
Confidence 8999999988743 344455666666666654 2 69998888865555 57777655 666 55 468778
Q ss_pred eccCchhhHh---hhhCCceEEEecCCc-----hh---hhhhhhcCCceeecc
Q 018253 216 KECVGNDRVE---HYTGNGIVVWSGNDD-----QC---HDARWNHGATGVISV 257 (359)
Q Consensus 216 K~ss~d~~l~---~~~~~~~~v~~G~d~-----~~---~~~~l~~Ga~G~is~ 257 (359)
|++.....++ ..++-.+ |.+|... .+ ....+..|+.|.+.|
T Consensus 186 ~ytg~~e~F~~vv~~~~vpV-viaGG~k~~~~~~~l~~~~~ai~aGa~G~~~G 237 (265)
T COG1830 186 KYTGDPESFRRVVAACGVPV-VIAGGPKTETEREFLEMVTAAIEAGAMGVAVG 237 (265)
T ss_pred cCCCChHHHHHHHHhCCCCE-EEeCCCCCCChHHHHHHHHHHHHccCcchhhh
Confidence 8876554443 3444333 3344322 12 123467788888765
No 33
>PRK09250 fructose-bisphosphate aldolase; Provisional
Probab=96.11 E-value=0.11 Score=51.32 Aligned_cols=127 Identities=11% Similarity=0.155 Sum_probs=85.9
Q ss_pred CHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCC-C-------HHHHHHHHHH
Q 018253 77 DLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSN-S-------TREAIHATEQ 148 (359)
Q Consensus 77 D~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~-s-------t~~ai~la~~ 148 (359)
+.+..+.+++..++.|++++... +-+++.......+++|+|+.+.+. + .+...--.+.
T Consensus 89 gl~dp~~~i~~a~~~g~dAv~~~--------------~G~l~~~~~~~~~~iplIlkln~~t~l~~~~~~~~~l~~sVed 154 (348)
T PRK09250 89 LYFDPENIVKLAIEAGCNAVAST--------------LGVLEAVARKYAHKIPFILKLNHNELLSYPNTYDQALTASVED 154 (348)
T ss_pred cccCHHHHHHHHHhcCCCEEEeC--------------HHHHHhccccccCCCCEEEEeCCCCCCCCCCCCcccceecHHH
Confidence 56677889999999999999865 556666444455689999987653 1 2333444788
Q ss_pred HHhCCCCEEEEcCCCCCCCCHHHHHHHHHHHHhc-----CCeEEEeCCCCCCCCC--------CHHHHH---HHh-cC-C
Q 018253 149 GFAVGMHAALHINPYYGKTSLEGLISHFDSVLSM-----GPTIIYNVPSRTGQDI--------PPRVIH---TMA-QS-P 210 (359)
Q Consensus 149 a~~~Gadav~v~pP~y~~~s~~~l~~yf~~Ia~a-----~PiiiYn~P~~tg~~l--------s~e~l~---~La-~~-p 210 (359)
|.++|||||.+.- |.....+.+.++-+.+++++ +|++++-.|. |..+ +++.++ +++ ++ .
T Consensus 155 AlrLGAdAV~~tv-y~Gs~~E~~ml~~l~~i~~ea~~~GlPlv~~~YpR--G~~i~~~~d~~~~~d~Ia~AaRiaaELGA 231 (348)
T PRK09250 155 ALRLGAVAVGATI-YFGSEESRRQIEEISEAFEEAHELGLATVLWSYLR--NSAFKKDGDYHTAADLTGQANHLAATIGA 231 (348)
T ss_pred HHHCCCCEEEEEE-ecCCHHHHHHHHHHHHHHHHHHHhCCCEEEEeccc--CcccCCcccccccHHHHHHHHHHHHHHcC
Confidence 9999999998872 22334456677777777653 6999877774 3222 245444 555 55 5
Q ss_pred CeEEEeccCc
Q 018253 211 NLAGVKECVG 220 (359)
Q Consensus 211 nivGiK~ss~ 220 (359)
.|+=+|++..
T Consensus 232 DIVKv~yp~~ 241 (348)
T PRK09250 232 DIIKQKLPTN 241 (348)
T ss_pred CEEEecCCCC
Confidence 7888998753
No 34
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=96.09 E-value=1.3 Score=41.92 Aligned_cols=177 Identities=16% Similarity=0.203 Sum_probs=102.9
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCCEEEEccCccC----------------cCCCCHHHHHHHHHHHHHhhCCCcEEEE
Q 018253 69 PYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGE----------------GQLMSWDEHIMLIGHTVNCFGASVKVIG 132 (359)
Q Consensus 69 PF~~dg~ID~~~l~~li~~li~~Gv~Gl~v~GstGE----------------~~~LT~~Er~~li~~~v~~~~grvpVia 132 (359)
||---|.-|++...+.++.+.+.|+|-|=++--.+. -.-+|.+.-.++++.+.+. .-++|++
T Consensus 14 ~y~~aG~P~~~~~~~~~~~l~~~Gad~iElGiPfsDP~aDGpvIq~a~~~al~~G~~~~~~~~~v~~ir~~-~~~~plv- 91 (256)
T TIGR00262 14 PFVTAGDPTLETSLEIIKTLIEAGADALELGVPFSDPLADGPTIQAADLRALRAGMTPEKCFELLKKVRQK-HPNIPIG- 91 (256)
T ss_pred EEEeCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCCCCcCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhc-CCCCCEE-
Confidence 344467789999999999999999998776553322 1123555555666665543 1257866
Q ss_pred ecCCCCH--H-HHHHHHHHHHhCCCCEEEEcCCCCCCCCHHHHHHHHHHHHhc-CCeEEEeCCCCCCCCCCHHHHHHHhc
Q 018253 133 NTGSNST--R-EAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSM-GPTIIYNVPSRTGQDIPPRVIHTMAQ 208 (359)
Q Consensus 133 gvg~~st--~-~ai~la~~a~~~Gadav~v~pP~y~~~s~~~l~~yf~~Ia~a-~PiiiYn~P~~tg~~ls~e~l~~La~ 208 (359)
..+-.+. + -.-++.+.++++|+|++++.. . ..++..++++.+-+. +..++-=.|. -+.+.+.++++
T Consensus 92 ~m~Y~Npi~~~G~e~f~~~~~~aGvdgviipD--l---p~ee~~~~~~~~~~~gl~~i~lv~P~-----T~~eri~~i~~ 161 (256)
T TIGR00262 92 LLTYYNLIFRKGVEEFYAKCKEVGVDGVLVAD--L---PLEESGDLVEAAKKHGVKPIFLVAPN-----ADDERLKQIAE 161 (256)
T ss_pred EEEeccHHhhhhHHHHHHHHHHcCCCEEEECC--C---ChHHHHHHHHHHHHCCCcEEEEECCC-----CCHHHHHHHHH
Confidence 3332233 1 235678999999999988852 2 236677777777665 4444444452 35677777774
Q ss_pred -CCCeEEE---------eccCch---h---hHhhhhCCceEEEecCC---chhhhhhhhcCCceeecccc
Q 018253 209 -SPNLAGV---------KECVGN---D---RVEHYTGNGIVVWSGND---DQCHDARWNHGATGVISVTS 259 (359)
Q Consensus 209 -~pnivGi---------K~ss~d---~---~l~~~~~~~~~v~~G~d---~~~~~~~l~~Ga~G~is~~a 259 (359)
.+.++.+ |....+ . +++++.+. .++.|.. ..-.......|+||++.|++
T Consensus 162 ~~~gfiy~vs~~G~TG~~~~~~~~~~~~i~~lr~~~~~--pi~vgfGI~~~e~~~~~~~~GADgvVvGSa 229 (256)
T TIGR00262 162 KSQGFVYLVSRAGVTGARNRAASALNELVKRLKAYSAK--PVLVGFGISKPEQVKQAIDAGADGVIVGSA 229 (256)
T ss_pred hCCCCEEEEECCCCCCCcccCChhHHHHHHHHHhhcCC--CEEEeCCCCCHHHHHHHHHcCCCEEEECHH
Confidence 3433322 211111 1 23333333 3444432 12233446789999999865
No 35
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=96.01 E-value=1 Score=43.18 Aligned_cols=63 Identities=19% Similarity=0.167 Sum_probs=48.5
Q ss_pred CCcEEEEecCCCCHHHHHHHHHHHHhCCCCEEEE--cCCCCCC------CCHHHHHHHHHHHHhc--CCeEEE
Q 018253 126 ASVKVIGNTGSNSTREAIHATEQGFAVGMHAALH--INPYYGK------TSLEGLISHFDSVLSM--GPTIIY 188 (359)
Q Consensus 126 grvpViagvg~~st~~ai~la~~a~~~Gadav~v--~pP~y~~------~s~~~l~~yf~~Ia~a--~PiiiY 188 (359)
.+.|+++++...+.++-.+.++.++++|+|++-+ ..|.... .+.+.+.+.++++.+. .||++=
T Consensus 88 ~~~p~ivsi~g~~~~~~~~~a~~~~~~G~d~iElN~~cP~~~~~g~~~~~~~~~~~eiv~~vr~~~~~Pv~vK 160 (296)
T cd04740 88 FGTPVIASIAGSTVEEFVEVAEKLADAGADAIELNISCPNVKGGGMAFGTDPEAVAEIVKAVKKATDVPVIVK 160 (296)
T ss_pred CCCcEEEEEecCCHHHHHHHHHHHHHcCCCEEEEECCCCCCCCCcccccCCHHHHHHHHHHHHhccCCCEEEE
Confidence 3579999999999999999999999999999966 3344322 3556677777777765 587765
No 36
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=95.93 E-value=1.3 Score=42.60 Aligned_cols=107 Identities=17% Similarity=0.042 Sum_probs=67.7
Q ss_pred HHHHHHHHCCCCEEEEccCccCcCC----------------------CCHHHHHHHHHHHHHhhCCCcEEEEecCCCCHH
Q 018253 83 DLVNMQIVNGAEGMIVGGTTGEGQL----------------------MSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTR 140 (359)
Q Consensus 83 ~li~~li~~Gv~Gl~v~GstGE~~~----------------------LT~~Er~~li~~~v~~~~grvpViagvg~~st~ 140 (359)
..++.+.+.|...+++.+-|-|-.. ...++..+-+....+. -++|++++++..+.+
T Consensus 27 ~~~~~~~~~g~g~v~~kti~~~~~~g~~~pr~~~~~~~~~n~~g~~~~g~~~~~~~~~~~~~~--~~~p~i~si~g~~~~ 104 (301)
T PRK07259 27 EYARFYDLNGLGAIVTKSTTLEPREGNPTPRIAETPGGMLNAIGLQNPGVDAFIEEELPWLEE--FDTPIIANVAGSTEE 104 (301)
T ss_pred HHHHHhhhcCCcEEEeCCCCCCCCCCCCCCcEEecCCceeecCCCCCcCHHHHHHHHHHHHhc--cCCcEEEEeccCCHH
Confidence 4555566788766655544444322 2233444333332222 258999999999999
Q ss_pred HHHHHHHHHHhCC-CCEEEE---c--CCC---CCCCCHHHHHHHHHHHHhc--CCeEEEeCC
Q 018253 141 EAIHATEQGFAVG-MHAALH---I--NPY---YGKTSLEGLISHFDSVLSM--GPTIIYNVP 191 (359)
Q Consensus 141 ~ai~la~~a~~~G-adav~v---~--pP~---y~~~s~~~l~~yf~~Ia~a--~PiiiYn~P 191 (359)
+-.+.++.++++| +|++-+ . .+. ....+.+.+.+..++|.++ .||++==.|
T Consensus 105 ~~~~~a~~~~~aG~~D~iElN~~cP~~~~gg~~~~~~~~~~~eiv~~vr~~~~~pv~vKl~~ 166 (301)
T PRK07259 105 EYAEVAEKLSKAPNVDAIELNISCPNVKHGGMAFGTDPELAYEVVKAVKEVVKVPVIVKLTP 166 (301)
T ss_pred HHHHHHHHHhccCCcCEEEEECCCCCCCCCccccccCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 9999999999999 999966 1 122 1223567777777777765 577764333
No 37
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=95.84 E-value=0.24 Score=48.12 Aligned_cols=122 Identities=15% Similarity=0.124 Sum_probs=75.6
Q ss_pred HHHHHHHHHHCCCCEEEEccCccCc---------------CCCCHHHH----HHHHHHHHHhhCCCcEEEEecCC-----
Q 018253 81 YDDLVNMQIVNGAEGMIVGGTTGEG---------------QLMSWDEH----IMLIGHTVNCFGASVKVIGNTGS----- 136 (359)
Q Consensus 81 l~~li~~li~~Gv~Gl~v~GstGE~---------------~~LT~~Er----~~li~~~v~~~~grvpViagvg~----- 136 (359)
+.+-.+...++|.|||=+.+..|-. +-=|.+.| .++++.+.+.++.++||.+=++.
T Consensus 143 ~~~aA~~a~~aGfDgveih~~~gyL~~qFlsp~~n~R~d~yGgs~enr~r~~~eii~avr~~~g~d~~i~vris~~~~~~ 222 (327)
T cd02803 143 FAAAARRAKEAGFDGVEIHGAHGYLLSQFLSPYTNKRTDEYGGSLENRARFLLEIVAAVREAVGPDFPVGVRLSADDFVP 222 (327)
T ss_pred HHHHHHHHHHcCCCEEEEcchhhhHHHHhcCccccCCCcccCCCHHHHHHHHHHHHHHHHHHcCCCceEEEEechhccCC
Confidence 3334445567999999998875531 01134566 45566666666667787764432
Q ss_pred --CCHHHHHHHHHHHHhCCCCEEEEcCCCCCCCC---------HHHHHHHHHHHHhc--CCeEEEeCCCCCCCCCCHHHH
Q 018253 137 --NSTREAIHATEQGFAVGMHAALHINPYYGKTS---------LEGLISHFDSVLSM--GPTIIYNVPSRTGQDIPPRVI 203 (359)
Q Consensus 137 --~st~~ai~la~~a~~~Gadav~v~pP~y~~~s---------~~~l~~yf~~Ia~a--~PiiiYn~P~~tg~~ls~e~l 203 (359)
.+.++++++++.+++.|+|.+-+....+..+. +..-..+.+.+.+. .||+.- |---+++.+
T Consensus 223 ~g~~~~e~~~la~~l~~~G~d~i~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~~iPVi~~------Ggi~t~~~a 296 (327)
T cd02803 223 GGLTLEEAIEIAKALEEAGVDALHVSGGSYESPPPIIPPPYVPEGYFLELAEKIKKAVKIPVIAV------GGIRDPEVA 296 (327)
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEeCCCCCcccccccCCCCCCcchhHHHHHHHHHHCCCCEEEe------CCCCCHHHH
Confidence 46899999999999999999988776553211 12234455555554 465532 323357777
Q ss_pred HHHhc
Q 018253 204 HTMAQ 208 (359)
Q Consensus 204 ~~La~ 208 (359)
.++.+
T Consensus 297 ~~~l~ 301 (327)
T cd02803 297 EEILA 301 (327)
T ss_pred HHHHH
Confidence 77653
No 38
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=95.80 E-value=0.11 Score=48.11 Aligned_cols=92 Identities=12% Similarity=0.082 Sum_probs=67.2
Q ss_pred CHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEE--ecCCCCHHHHHHHHHHHHhCCC
Q 018253 77 DLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIG--NTGSNSTREAIHATEQGFAVGM 154 (359)
Q Consensus 77 D~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpVia--gvg~~st~~ai~la~~a~~~Ga 154 (359)
+.+.+.+.++...+.|+|-|.+..++ . .+.++.+++.. ++||++ |++..+.+++++.++.+.+.||
T Consensus 141 ~~~~i~~~~~~a~~~GaD~Ik~~~~~------~----~~~~~~i~~~~--~~pvv~~GG~~~~~~~~~l~~~~~~~~~Ga 208 (235)
T cd00958 141 DPDLIAYAARIGAELGADIVKTKYTG------D----AESFKEVVEGC--PVPVVIAGGPKKDSEEEFLKMVYDAMEAGA 208 (235)
T ss_pred CHHHHHHHHHHHHHHCCCEEEecCCC------C----HHHHHHHHhcC--CCCEEEeCCCCCCCHHHHHHHHHHHHHcCC
Confidence 34556666666777888888775332 1 33455555543 466655 4555789999999999999999
Q ss_pred CEEEEcCCCCCCCCHHHHHHHHHHHH
Q 018253 155 HAALHINPYYGKTSLEGLISHFDSVL 180 (359)
Q Consensus 155 dav~v~pP~y~~~s~~~l~~yf~~Ia 180 (359)
+++.+..-.+...++++..+-++++.
T Consensus 209 ~gv~vg~~i~~~~dp~~~~~~~~~~~ 234 (235)
T cd00958 209 AGVAVGRNIFQRPDPVAMLRAISAVV 234 (235)
T ss_pred cEEEechhhhcCCCHHHHHHHHHHHh
Confidence 99999999898888888888887763
No 39
>COG1646 Predicted phosphate-binding enzymes, TIM-barrel fold [General function prediction only]
Probab=95.78 E-value=0.38 Score=44.79 Aligned_cols=161 Identities=17% Similarity=0.192 Sum_probs=94.3
Q ss_pred HHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCCCHHHHHHHHHHHHhCCCCEEE
Q 018253 79 EAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAAL 158 (359)
Q Consensus 79 ~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~st~~ai~la~~a~~~Gadav~ 158 (359)
+...+.++.+.+.|.|+|+++||+|= |.++-.++++...+ .-.+|||.=.|+.+- ..-+||+++
T Consensus 28 ~~~~ei~~~~~~~GTDaImIGGS~gv----t~~~~~~~v~~ik~--~~~lPvilfP~~~~~----------is~~aDavf 91 (240)
T COG1646 28 EEADEIAEAAAEAGTDAIMIGGSDGV----TEENVDNVVEAIKE--RTDLPVILFPGSPSG----------ISPYADAVF 91 (240)
T ss_pred cccHHHHHHHHHcCCCEEEECCcccc----cHHHHHHHHHHHHh--hcCCCEEEecCChhc----------cCccCCeEE
Confidence 44566777888999999999999996 78888888888776 347999987775321 112789988
Q ss_pred EcC------CCCCCCCHHHHHHHHHHHHhc-CC--eEEEeCCCCC-----C---CCCCHHHH---HHHhc-C--CCeEEE
Q 018253 159 HIN------PYYGKTSLEGLISHFDSVLSM-GP--TIIYNVPSRT-----G---QDIPPRVI---HTMAQ-S--PNLAGV 215 (359)
Q Consensus 159 v~p------P~y~~~s~~~l~~yf~~Ia~a-~P--iiiYn~P~~t-----g---~~ls~e~l---~~La~-~--pnivGi 215 (359)
++. |||.-..|-+-..-+..+-.+ .| -++.| |..+ + +++..+.+ .+|++ + =.++.+
T Consensus 92 f~svLNS~n~~~i~gaq~~~a~~~~~~~~e~i~~gYiV~~-p~~~va~v~~A~~ip~~~~~iaa~y~la~~~~g~~~~Yl 170 (240)
T COG1646 92 FPSVLNSDNPYWIVGAQVEGAKLVGKLGLEVIPEGYIVVN-PDGTVAWVGKAKPIPLDKEDIAAYYALAEKYLGMPVVYL 170 (240)
T ss_pred EEEEecCCCcccccchhhhhhHHHHhhhheecceEEEEEC-CCCceeeecccccCCCCcHHHHHHHHHHHHHhCCeEEEE
Confidence 764 677544443333333333333 44 24444 3322 2 33443333 34553 2 247778
Q ss_pred eccCch--h----hHhhhhCCceEEEecCC----chhhhhhhhcCCceeeccc
Q 018253 216 KECVGN--D----RVEHYTGNGIVVWSGND----DQCHDARWNHGATGVISVT 258 (359)
Q Consensus 216 K~ss~d--~----~l~~~~~~~~~v~~G~d----~~~~~~~l~~Ga~G~is~~ 258 (359)
-.+|+- + .+++.... ..+|.|.. ++.. ....+|+|-++.|.
T Consensus 171 Eagsga~~Pv~~e~v~~v~~~-~~LivGGGIrs~E~A~-~~a~agAD~IVtG~ 221 (240)
T COG1646 171 EAGSGAGDPVPVEMVSRVLSD-TPLIVGGGIRSPEQAR-EMAEAGADTIVTGT 221 (240)
T ss_pred EecCCCCCCcCHHHHHHhhcc-ceEEEcCCcCCHHHHH-HHHHcCCCEEEECc
Confidence 888764 1 23333222 24555432 2333 33456999887663
No 40
>CHL00040 rbcL ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit
Probab=95.68 E-value=0.31 Score=50.18 Aligned_cols=103 Identities=13% Similarity=0.128 Sum_probs=76.9
Q ss_pred eeecCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhC---CCcEE-EEecCCCCHH
Q 018253 65 AIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFG---ASVKV-IGNTGSNSTR 140 (359)
Q Consensus 65 al~TPF~~dg~ID~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~---grvpV-iagvg~~st~ 140 (359)
-+-|-+++.--+.-+.+.+++..+...|+|=|====.-+.......+||...+-.+++.+. |+.++ .+++++.+++
T Consensus 169 LigtiiKP~~GLsp~~~A~~~y~~~~GGvD~IKDDE~l~dq~~~p~~eRv~~~~~a~~~a~~eTG~~~~y~~NiTa~~~~ 248 (475)
T CHL00040 169 LLGCTIKPKLGLSAKNYGRAVYECLRGGLDFTKDDENVNSQPFMRWRDRFLFCAEAIYKAQAETGEIKGHYLNATAGTCE 248 (475)
T ss_pred eEEEecccccCCCHHHHHHHHHHHHcCCCcccccCccCCCCCCCCHHHHHHHHHHHHHHHHHhhCCcceeeeccCCCCHH
Confidence 3445556654589999999999999999884321113456677789999988877777543 44444 7789878999
Q ss_pred HHHHHHHHHHhCCCCEEEEcCCCCCCC
Q 018253 141 EAIHATEQGFAVGMHAALHINPYYGKT 167 (359)
Q Consensus 141 ~ai~la~~a~~~Gadav~v~pP~y~~~ 167 (359)
+.++.++.+++.|+.++|+-+-.+.-.
T Consensus 249 em~~ra~~a~e~G~~~~mv~~~~~G~~ 275 (475)
T CHL00040 249 EMYKRAVFARELGVPIVMHDYLTGGFT 275 (475)
T ss_pred HHHHHHHHHHHcCCceEEEeccccccc
Confidence 999999999999999998876555433
No 41
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=95.67 E-value=1 Score=41.54 Aligned_cols=169 Identities=14% Similarity=0.065 Sum_probs=108.2
Q ss_pred cCCceEEeeecCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCC
Q 018253 58 KALRLITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSN 137 (359)
Q Consensus 58 ~~~Gi~~al~TPF~~dg~ID~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~ 137 (359)
.-.++++.+-. .|.+...++++.+++.|++-+=+. |+..+-.+.++...+..+ + +++|+|.-
T Consensus 13 ~~~~~iaV~r~-------~~~~~a~~i~~al~~~Gi~~iEit--------l~~~~~~~~I~~l~~~~p-~--~~IGAGTV 74 (212)
T PRK05718 13 RAGPVVPVIVI-------NKLEDAVPLAKALVAGGLPVLEVT--------LRTPAALEAIRLIAKEVP-E--ALIGAGTV 74 (212)
T ss_pred HHCCEEEEEEc-------CCHHHHHHHHHHHHHcCCCEEEEe--------cCCccHHHHHHHHHHHCC-C--CEEEEeec
Confidence 34667776543 577899999999999999987554 666788889988887765 4 56676655
Q ss_pred CHHHHHHHHHHHHhCCCCEEEEcCCCCCCCCHHHHHHHHHHHHhcCCeEEEeCCCCCCCCCCHHHHHHHhcC-CCeEEEe
Q 018253 138 STREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSMGPTIIYNVPSRTGQDIPPRVIHTMAQS-PNLAGVK 216 (359)
Q Consensus 138 st~~ai~la~~a~~~Gadav~v~pP~y~~~s~~~l~~yf~~Ia~a~PiiiYn~P~~tg~~ls~e~l~~La~~-pnivGiK 216 (359)
.+. +.++.|.++||+-++. |.+ + .++.++.++ |++|...|. ++|..+.+..+. -.++-+-
T Consensus 75 l~~---~~a~~a~~aGA~Fivs--P~~---~-~~vi~~a~~---------~~i~~iPG~-~TptEi~~a~~~Ga~~vKlF 135 (212)
T PRK05718 75 LNP---EQLAQAIEAGAQFIVS--PGL---T-PPLLKAAQE---------GPIPLIPGV-STPSELMLGMELGLRTFKFF 135 (212)
T ss_pred cCH---HHHHHHHHcCCCEEEC--CCC---C-HHHHHHHHH---------cCCCEeCCC-CCHHHHHHHHHCCCCEEEEc
Confidence 444 7788999999986554 555 3 377777766 666655564 566556665544 3454444
Q ss_pred ccC--chh-hHhhhhC--C--ceEEEecCCchhhhhhhhcCCceeecccccccHH
Q 018253 217 ECV--GND-RVEHYTG--N--GIVVWSGNDDQCHDARWNHGATGVISVTSNLVPG 264 (359)
Q Consensus 217 ~ss--~d~-~l~~~~~--~--~~~v~~G~d~~~~~~~l~~Ga~G~is~~an~~P~ 264 (359)
..+ +.. .++.+.. + +|..-.|-+..-+..++..|+..++. .++++|+
T Consensus 136 Pa~~~gg~~~lk~l~~p~p~~~~~ptGGV~~~ni~~~l~ag~v~~vg-gs~L~~~ 189 (212)
T PRK05718 136 PAEASGGVKMLKALAGPFPDVRFCPTGGISPANYRDYLALPNVLCIG-GSWMVPK 189 (212)
T ss_pred cchhccCHHHHHHHhccCCCCeEEEeCCCCHHHHHHHHhCCCEEEEE-ChHhCCc
Confidence 332 122 2333321 2 44444476655666777888555544 5666664
No 42
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=95.56 E-value=0.19 Score=46.11 Aligned_cols=84 Identities=13% Similarity=0.056 Sum_probs=57.8
Q ss_pred CHHHHHHHHHHHHHCCCCEEEEccCc----------cCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCC-CCH-HHHHH
Q 018253 77 DLEAYDDLVNMQIVNGAEGMIVGGTT----------GEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGS-NST-REAIH 144 (359)
Q Consensus 77 D~~~l~~li~~li~~Gv~Gl~v~Gst----------GE~~~LT~~Er~~li~~~v~~~~grvpViagvg~-~st-~~ai~ 144 (359)
|.+.+.+..+.+.+.|++||=+++.. |-...-..+.-.++++.+.+.++ +||.+.+.. .+. +++++
T Consensus 65 ~~~~~~~aa~~~~~aG~d~ieln~g~p~~~~~~~~~G~~l~~~~~~~~eii~~v~~~~~--~~v~vk~r~~~~~~~~~~~ 142 (231)
T cd02801 65 DPETLAEAAKIVEELGADGIDLNMGCPSPKVTKGGAGAALLKDPELVAEIVRAVREAVP--IPVTVKIRLGWDDEEETLE 142 (231)
T ss_pred CHHHHHHHHHHHHhcCCCEEEEeCCCCHHHHhCCCeeehhcCCHHHHHHHHHHHHHhcC--CCEEEEEeeccCCchHHHH
Confidence 67889999999989999999887654 11111133444556666655543 577776532 122 48999
Q ss_pred HHHHHHhCCCCEEEEcCC
Q 018253 145 ATEQGFAVGMHAALHINP 162 (359)
Q Consensus 145 la~~a~~~Gadav~v~pP 162 (359)
+++...+.|+|.+.+...
T Consensus 143 ~~~~l~~~Gvd~i~v~~~ 160 (231)
T cd02801 143 LAKALEDAGASALTVHGR 160 (231)
T ss_pred HHHHHHHhCCCEEEECCC
Confidence 999999999999987653
No 43
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=95.52 E-value=0.12 Score=49.90 Aligned_cols=83 Identities=11% Similarity=0.069 Sum_probs=67.7
Q ss_pred CHHHHHHHHHHHHHCC-CCEEEEcc-----Cc-cCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCCCHHHHHHHHHHH
Q 018253 77 DLEAYDDLVNMQIVNG-AEGMIVGG-----TT-GEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQG 149 (359)
Q Consensus 77 D~~~l~~li~~li~~G-v~Gl~v~G-----st-GE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~st~~ai~la~~a 149 (359)
|.+.+.+.++.+.+.| +|+|=++. .. |+....+.+.-.++++.+.+.+ ++||++=++. +.++.+++++.+
T Consensus 102 ~~~~~~~~a~~~~~aG~~D~iElN~~cP~~~~gg~~~~~~~~~~~eiv~~vr~~~--~~pv~vKl~~-~~~~~~~~a~~l 178 (301)
T PRK07259 102 TEEEYAEVAEKLSKAPNVDAIELNISCPNVKHGGMAFGTDPELAYEVVKAVKEVV--KVPVIVKLTP-NVTDIVEIAKAA 178 (301)
T ss_pred CHHHHHHHHHHHhccCCcCEEEEECCCCCCCCCccccccCHHHHHHHHHHHHHhc--CCCEEEEcCC-CchhHHHHHHHH
Confidence 6789999999999998 99997743 22 5666667788888888888776 6899998874 567999999999
Q ss_pred HhCCCCEEEEcCC
Q 018253 150 FAVGMHAALHINP 162 (359)
Q Consensus 150 ~~~Gadav~v~pP 162 (359)
++.|+|++.++.-
T Consensus 179 ~~~G~d~i~~~nt 191 (301)
T PRK07259 179 EEAGADGLSLINT 191 (301)
T ss_pred HHcCCCEEEEEcc
Confidence 9999999987643
No 44
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=95.50 E-value=2.4 Score=40.41 Aligned_cols=176 Identities=11% Similarity=0.112 Sum_probs=102.6
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCCEEEEccCccC----cC------------CCCHHHHHHHHHHHHHhhCCCcEEEE
Q 018253 69 PYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGE----GQ------------LMSWDEHIMLIGHTVNCFGASVKVIG 132 (359)
Q Consensus 69 PF~~dg~ID~~~l~~li~~li~~Gv~Gl~v~GstGE----~~------------~LT~~Er~~li~~~v~~~~grvpVia 132 (359)
||---|.-|++.+.+.++.+++.|+|-|=++=-.+. ++ -+|.+.-.++++.+.+. -++|++.
T Consensus 19 ~yi~aG~P~~~~~~~~~~~l~~~Gad~iElGiPfSDP~aDGpvIq~a~~rAL~~g~~~~~~~~~~~~~r~~--~~~p~vl 96 (263)
T CHL00200 19 PFITAGDPDIVITKKALKILDKKGADIIELGIPYSDPLADGPIIQEASNRALKQGINLNKILSILSEVNGE--IKAPIVI 96 (263)
T ss_pred EEEeCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCccCHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC--CCCCEEE
Confidence 444467789999999999999999997755433322 11 12333444444444322 3678665
Q ss_pred ecCCCCHHH--HHHHHHHHHhCCCCEEEEcCCCCCCCCHHHHHHHHHHHHhc-C-CeEEEeCCCCCCCCCCHHHHHHHhc
Q 018253 133 NTGSNSTRE--AIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSM-G-PTIIYNVPSRTGQDIPPRVIHTMAQ 208 (359)
Q Consensus 133 gvg~~st~~--ai~la~~a~~~Gadav~v~pP~y~~~s~~~l~~yf~~Ia~a-~-PiiiYn~P~~tg~~ls~e~l~~La~ 208 (359)
=+..|..-. .-++.+.++++|+|++++. .. ..++..+|++.+.+. + +|.+. .|. -+.+-++++++
T Consensus 97 m~Y~N~i~~~G~e~F~~~~~~aGvdgviip--DL---P~ee~~~~~~~~~~~gi~~I~lv-~Pt-----T~~eri~~i~~ 165 (263)
T CHL00200 97 FTYYNPVLHYGINKFIKKISQAGVKGLIIP--DL---PYEESDYLISVCNLYNIELILLI-APT-----SSKSRIQKIAR 165 (263)
T ss_pred EecccHHHHhCHHHHHHHHHHcCCeEEEec--CC---CHHHHHHHHHHHHHcCCCEEEEE-CCC-----CCHHHHHHHHH
Confidence 455443322 3457889999999999884 22 237777888877765 4 45554 342 35778888874
Q ss_pred -CCCeE---------EEeccCch--h----hHhhhhCCceEEEecCCc---hhhhhhhhcCCceeecccc
Q 018253 209 -SPNLA---------GVKECVGN--D----RVEHYTGNGIVVWSGNDD---QCHDARWNHGATGVISVTS 259 (359)
Q Consensus 209 -~pniv---------GiK~ss~d--~----~l~~~~~~~~~v~~G~d~---~~~~~~l~~Ga~G~is~~a 259 (359)
...++ |.|....+ . ++++.++. .+..|..- .-.......|+||+|.|++
T Consensus 166 ~a~gFIY~vS~~GvTG~~~~~~~~~~~~i~~ir~~t~~--Pi~vGFGI~~~e~~~~~~~~GADGvVVGSa 233 (263)
T CHL00200 166 AAPGCIYLVSTTGVTGLKTELDKKLKKLIETIKKMTNK--PIILGFGISTSEQIKQIKGWNINGIVIGSA 233 (263)
T ss_pred hCCCcEEEEcCCCCCCCCccccHHHHHHHHHHHHhcCC--CEEEECCcCCHHHHHHHHhcCCCEEEECHH
Confidence 33343 33322111 0 23333333 34444431 1223335689999999865
No 45
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=95.43 E-value=0.079 Score=51.25 Aligned_cols=93 Identities=18% Similarity=0.234 Sum_probs=62.6
Q ss_pred HHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCCCHHHHHHHHHHHHhCCCCEEEEcCCCC
Q 018253 85 VNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYY 164 (359)
Q Consensus 85 i~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~st~~ai~la~~a~~~Gadav~v~pP~y 164 (359)
+..+.+.|+++|.+.|+.|....-... -.+++..+.+.+.+++|||+.=|=.+..++++.. .+|||+|++..|+.
T Consensus 186 a~~a~~~G~d~I~v~~~gG~~~~~g~~-~~~~l~~i~~~~~~~ipvia~GGI~~~~d~~kal----~lGAd~V~ig~~~l 260 (299)
T cd02809 186 ALRAVDAGADGIVVSNHGGRQLDGAPA-TIDALPEIVAAVGGRIEVLLDGGIRRGTDVLKAL----ALGADAVLIGRPFL 260 (299)
T ss_pred HHHHHHCCCCEEEEcCCCCCCCCCCcC-HHHHHHHHHHHhcCCCeEEEeCCCCCHHHHHHHH----HcCCCEEEEcHHHH
Confidence 556778999999998887753221111 2344555556666679998754444555555444 49999999999977
Q ss_pred CC---CCHHHHHHHHHHHHhc
Q 018253 165 GK---TSLEGLISHFDSVLSM 182 (359)
Q Consensus 165 ~~---~s~~~l~~yf~~Ia~a 182 (359)
+. ..++++.++++.+.+.
T Consensus 261 ~~~~~~g~~~v~~~i~~l~~e 281 (299)
T cd02809 261 YGLAAGGEAGVAHVLEILRDE 281 (299)
T ss_pred HHHHhcCHHHHHHHHHHHHHH
Confidence 54 3567888888777654
No 46
>PRK08227 autoinducer 2 aldolase; Validated
Probab=95.41 E-value=0.63 Score=44.39 Aligned_cols=159 Identities=13% Similarity=0.043 Sum_probs=94.3
Q ss_pred HHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCC-------CHHHHHHHHHHHHhC
Q 018253 80 AYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSN-------STREAIHATEQGFAV 152 (359)
Q Consensus 80 ~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~-------st~~ai~la~~a~~~ 152 (359)
.+...++.+.+ |++++++. +-+++...... .++|+|+.+++. ..+..+--.++|.++
T Consensus 43 ~~~~~~~~i~~-~~da~~~~--------------~G~~~~~~~~~-~~~~lil~ls~~t~~~~~~~~~~l~~sVeeAvrl 106 (264)
T PRK08227 43 RIDINIAPLFP-YADVLMCT--------------RGILRSVVPPA-TNKPVVLRASGGNSILKELSNEAVAVDMEDAVRL 106 (264)
T ss_pred ChHHHHHHHhh-cCCEEEeC--------------hhHHHhccccc-CCCcEEEEEcCCCCCCCCCCcccceecHHHHHHC
Confidence 34666777777 89998865 44555533333 468999987752 234444457889999
Q ss_pred CCCEEEEcCCCCCCCCHHHHHHHHHHHHhc-----CCeEEEeCCCCCCCCCCHHH---HHHHh-cC-CCeEEEeccCch-
Q 018253 153 GMHAALHINPYYGKTSLEGLISHFDSVLSM-----GPTIIYNVPSRTGQDIPPRV---IHTMA-QS-PNLAGVKECVGN- 221 (359)
Q Consensus 153 Gadav~v~pP~y~~~s~~~l~~yf~~Ia~a-----~PiiiYn~P~~tg~~ls~e~---l~~La-~~-pnivGiK~ss~d- 221 (359)
|||||.+.-. .....+.+.++.+.+|++. +|++.. .|......=+++. ..|++ ++ ..|+=++++...
T Consensus 107 GAdAV~~~v~-~Gs~~E~~~l~~l~~v~~ea~~~G~Plla~-~prG~~~~~~~~~ia~aaRiaaELGADiVK~~y~~~~f 184 (264)
T PRK08227 107 NACAVAAQVF-IGSEYEHQSIKNIIQLVDAGLRYGMPVMAV-TAVGKDMVRDARYFSLATRIAAEMGAQIIKTYYVEEGF 184 (264)
T ss_pred CCCEEEEEEe-cCCHHHHHHHHHHHHHHHHHHHhCCcEEEE-ecCCCCcCchHHHHHHHHHHHHHHcCCEEecCCCHHHH
Confidence 9999988732 2344566777778887764 698872 2532222223443 34665 55 478888887511
Q ss_pred hhHhhhhCCceEEEecCCc----hh---hhhhhhcCCceeecc
Q 018253 222 DRVEHYTGNGIVVWSGNDD----QC---HDARWNHGATGVISV 257 (359)
Q Consensus 222 ~~l~~~~~~~~~v~~G~d~----~~---~~~~l~~Ga~G~is~ 257 (359)
.++.+..+-.+ ++.|... .+ ...++..|+.|+..|
T Consensus 185 ~~vv~a~~vPV-viaGG~k~~~~~~L~~v~~ai~aGa~Gv~~G 226 (264)
T PRK08227 185 ERITAGCPVPI-VIAGGKKLPERDALEMCYQAIDEGASGVDMG 226 (264)
T ss_pred HHHHHcCCCcE-EEeCCCCCCHHHHHHHHHHHHHcCCceeeec
Confidence 23333333233 3444322 11 123477899998766
No 47
>cd08206 RuBisCO_large_I_II_III Ribulose bisphosphate carboxylase large chain, Form I,II,III. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubico-like proteins (RLP), are missing critical active site residues.
Probab=95.31 E-value=0.45 Score=48.22 Aligned_cols=99 Identities=14% Similarity=0.191 Sum_probs=74.1
Q ss_pred eecCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEcc-CccCcCCCCHHHHHHHHHHHHHh----hCCCcEEEEecCCCCHH
Q 018253 66 IKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGG-TTGEGQLMSWDEHIMLIGHTVNC----FGASVKVIGNTGSNSTR 140 (359)
Q Consensus 66 l~TPF~~dg~ID~~~l~~li~~li~~Gv~Gl~v~G-stGE~~~LT~~Er~~li~~~v~~----~~grvpViagvg~~st~ 140 (359)
+-|-+++.--+.-+.+.+++..+...|+|=|= -- .-........+||...+-.+++. ++.++--.+++++.+++
T Consensus 135 ~~tiiKP~~Glsp~~~a~~~y~~~~GGiD~IK-DDE~l~~q~~~p~~eRv~~~~~a~~~a~~eTG~~~~y~~NiT~~~~~ 213 (414)
T cd08206 135 LGTIVKPKLGLSPKEYARVVYEALRGGLDFVK-DDENQNSQPFMRFEDRILFVAEAMDKAEAETGEAKGHYLNITADTPE 213 (414)
T ss_pred EEEecccccCCCHHHHHHHHHHHHhcCCcccc-cCccCCCCCCCcHHHHHHHHHHHHHHHHHhhCCcceEEeccCCCcHH
Confidence 44555565458899999999999999998332 22 24456777899998888766665 33444456688877799
Q ss_pred HHHHHHHHHHhCCCCEEEEcCCCCC
Q 018253 141 EAIHATEQGFAVGMHAALHINPYYG 165 (359)
Q Consensus 141 ~ai~la~~a~~~Gadav~v~pP~y~ 165 (359)
+.++.++.++++|+.++|+-+-.+.
T Consensus 214 em~~ra~~~~~~G~~~~mv~~~~~G 238 (414)
T cd08206 214 EMIKRAEFAKELGSVIVMVDGVTAG 238 (414)
T ss_pred HHHHHHHHHHHhCCcEEEEeeeccc
Confidence 9999999999999999999865554
No 48
>TIGR03326 rubisco_III ribulose bisphosphate carboxylase, type III. Members of this protein family are the archaeal, single chain, type III form of ribulose bisphosphate carboxylase, or RuBisCO. Members act is a three-step pathway for conversion of the sugar moiety of AMP to two molecules of 3-phosphoglycerate. Many of these species use ADP-dependent sugar kinases, which form AMP, for glycolysis.
Probab=95.31 E-value=0.65 Score=47.08 Aligned_cols=101 Identities=12% Similarity=0.053 Sum_probs=75.9
Q ss_pred EeeecCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHh----hCCCcEEEEecCCCCH
Q 018253 64 TAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNC----FGASVKVIGNTGSNST 139 (359)
Q Consensus 64 ~al~TPF~~dg~ID~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~----~~grvpViagvg~~st 139 (359)
|-+-|-+++.--+.-+.+.+++..+...|+|=|====.-........+||...+-.+++. ++.++-..+++++ ++
T Consensus 145 PL~gtiiKP~~Glsp~~~a~~~~~~~~GGvD~IKDDE~l~~q~~~p~~eRv~~~~~a~~~a~~eTG~~~~ya~NiT~-~~ 223 (412)
T TIGR03326 145 PLLGTVPKPKVGLSTEEHAKVAYELWSGGVDLLKDDENLTSQPFNRFEERVEKLYKVRDKVEAETGERKEYLANITA-PV 223 (412)
T ss_pred ceEEeeccccccCChHHHHHHHHHHHhcCCceeecCCCCCCCCCccHHHHHHHHHHHHHHHHHHhCCcceEEEEecC-CH
Confidence 334566666655899999999999999999843322234556678899999888777754 4444445678886 49
Q ss_pred HHHHHHHHHHHhCCCCEEEEcCCCCC
Q 018253 140 REAIHATEQGFAVGMHAALHINPYYG 165 (359)
Q Consensus 140 ~~ai~la~~a~~~Gadav~v~pP~y~ 165 (359)
++.++.++.+++.|++++|+-+-.+.
T Consensus 224 ~em~~ra~~~~~~G~~~~mv~~~~~G 249 (412)
T TIGR03326 224 REMERRAELVADLGGQYVMVDVVVCG 249 (412)
T ss_pred HHHHHHHHHHHHhCCCeEEEEeeccc
Confidence 99999999999999999999855553
No 49
>TIGR01768 GGGP-family geranylgeranylglyceryl phosphate synthase family protein. This model represents a family of sequences including geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The clade of bacterial sequences may have the same function or a closely related function. This model supercedes TIGR00265, which has been retired.
Probab=95.19 E-value=2 Score=40.01 Aligned_cols=169 Identities=14% Similarity=0.169 Sum_probs=93.9
Q ss_pred HHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCCCHHHHHHHHHHHHhCCCCEEEEcC
Q 018253 82 DDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHIN 161 (359)
Q Consensus 82 ~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~st~~ai~la~~a~~~Gadav~v~p 161 (359)
.+.++.+.+.|.|+|+++||+|. |.+.-.++++.+.+. .+||+.=.|+.+. ..-+||++++..
T Consensus 17 ~~~~~~~~~~gtdai~vGGS~~v----t~~~~~~~v~~ik~~---~lPvilfp~~~~~----------i~~~aDa~l~~s 79 (223)
T TIGR01768 17 DEIAKAAAESGTDAILIGGSQGV----TYEKTDTLIEALRRY---GLPIILFPSNPTN----------VSRDADALFFPS 79 (223)
T ss_pred HHHHHHHHhcCCCEEEEcCCCcc----cHHHHHHHHHHHhcc---CCCEEEeCCCccc----------cCcCCCEEEEEE
Confidence 34777888999999999999997 777666677776652 2899986654321 125699998874
Q ss_pred ------CCCCCCCHHHHHHHHHHHHhc-CC--eEEEeCCCCCC-------CCCCHHHH---HHHh-c-CC-CeEEEeccC
Q 018253 162 ------PYYGKTSLEGLISHFDSVLSM-GP--TIIYNVPSRTG-------QDIPPRVI---HTMA-Q-SP-NLAGVKECV 219 (359)
Q Consensus 162 ------P~y~~~s~~~l~~yf~~Ia~a-~P--iiiYn~P~~tg-------~~ls~e~l---~~La-~-~p-nivGiK~ss 219 (359)
|+|.-..+-+-..-|..+... .| -++-|.-...+ .+.+.+.+ .+|+ + .. .++.+-.+|
T Consensus 80 vlNs~~~~~iig~~~~~~~~~~~~~~e~ip~gYiv~~~~~~v~~v~~a~~~p~~~~~~aa~~~lA~~~~g~~~vYlE~gs 159 (223)
T TIGR01768 80 VLNSDDPYWIIGAQIEAAPKFKKIGEEIIPEGYIIVNPGGAAARVTKAKPIPYDKEDLAAYAAMAEEMLGMPIIYLEAGS 159 (223)
T ss_pred eecCCCchHHHhHHHHHHHHHhhhcceecceEEEEECCCcceeecccccccCCCcHHHHHHHHHHHHHcCCcEEEEEecC
Confidence 666444443333333444333 56 23334322111 11333322 3455 3 22 577777776
Q ss_pred ch-----h----hHhhhhCCceEEEecCC---chhhhhhhhcCCceeeccccccc-HHHHHH
Q 018253 220 GN-----D----RVEHYTGNGIVVWSGND---DQCHDARWNHGATGVISVTSNLV-PGMMRE 268 (359)
Q Consensus 220 ~d-----~----~l~~~~~~~~~v~~G~d---~~~~~~~l~~Ga~G~is~~an~~-P~l~~~ 268 (359)
+- . ++++..+ +..++.|.. ..-....+.+|+++++.|+.-+- |+.+.+
T Consensus 160 ~~g~~v~~e~i~~v~~~~~-~~pl~vGGGIrs~e~a~~l~~aGAD~VVVGs~~~~dp~~~~~ 220 (223)
T TIGR01768 160 GAPEPVPPELVAEVKKVLD-KARLFVGGGIRSVEKAREMAEAGADTIVTGNVIEEDVDKALE 220 (223)
T ss_pred CCCCCcCHHHHHHHHHHcC-CCCEEEecCCCCHHHHHHHHHcCCCEEEECcHHhhCHHHHHH
Confidence 53 1 1233321 344544442 12223445679999998765442 444443
No 50
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=95.17 E-value=0.19 Score=48.26 Aligned_cols=85 Identities=12% Similarity=0.105 Sum_probs=67.2
Q ss_pred CHHHHHHHHHHHHHCCCCEEEEccCc------cCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCCCHHHHHHHHHHHH
Q 018253 77 DLEAYDDLVNMQIVNGAEGMIVGGTT------GEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGF 150 (359)
Q Consensus 77 D~~~l~~li~~li~~Gv~Gl~v~Gst------GE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~st~~ai~la~~a~ 150 (359)
+.+.+.+.++.+.+.|+|+|-++-++ |..+.-+.+.-.++++.+.+.+ ++||++-++. +.++..++++.++
T Consensus 100 ~~~~~~~~a~~~~~~G~d~iElN~~cP~~~~~g~~~~~~~~~~~eiv~~vr~~~--~~Pv~vKl~~-~~~~~~~~a~~~~ 176 (296)
T cd04740 100 TVEEFVEVAEKLADAGADAIELNISCPNVKGGGMAFGTDPEAVAEIVKAVKKAT--DVPVIVKLTP-NVTDIVEIARAAE 176 (296)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEECCCCCCCCCcccccCCHHHHHHHHHHHHhcc--CCCEEEEeCC-CchhHHHHHHHHH
Confidence 57889999999999999999886553 4445556666778888887766 6899998864 5568999999999
Q ss_pred hCCCCEEEEcCCCC
Q 018253 151 AVGMHAALHINPYY 164 (359)
Q Consensus 151 ~~Gadav~v~pP~y 164 (359)
++|+|++.+..-.+
T Consensus 177 ~~G~d~i~~~nt~~ 190 (296)
T cd04740 177 EAGADGLTLINTLK 190 (296)
T ss_pred HcCCCEEEEECCCc
Confidence 99999998865443
No 51
>cd08207 RLP_NonPhot Ribulose bisphosphate carboxylase like proteins from nonphototrophic bacteria. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions. The specific function of this subgroup is unknown.
Probab=95.08 E-value=0.68 Score=46.86 Aligned_cols=101 Identities=16% Similarity=0.073 Sum_probs=75.2
Q ss_pred EeeecCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhh----CCCcEEEEecCCCCH
Q 018253 64 TAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCF----GASVKVIGNTGSNST 139 (359)
Q Consensus 64 ~al~TPF~~dg~ID~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~----~grvpViagvg~~st 139 (359)
|-+-|-+++.--+.-+.+.+++..+...|+|=|====.-+.......+||...+-.+++.+ +.++-..+++++. +
T Consensus 144 PLigtiiKP~~Glsp~~~a~~~y~~~~GGvD~IKDDE~l~~q~~~p~~eRv~~~~~a~~~a~~eTG~~~~y~~NiT~~-~ 222 (406)
T cd08207 144 PLIGTIIKPSVGLTPEETAALVRQLAAAGIDFIKDDELLANPPYSPLDERVRAVMRVINDHAQRTGRKVMYAFNITDD-I 222 (406)
T ss_pred ceEEEecccccCCCHHHHHHHHHHHHhCCCCcccccccCCCCCCCcHHHHHHHHHHHHHHHHHhhCCcceEEEecCCC-H
Confidence 3445556665558999999999999999998432111345666788999988777766654 3344456688864 9
Q ss_pred HHHHHHHHHHHhCCCCEEEEcCCCCC
Q 018253 140 REAIHATEQGFAVGMHAALHINPYYG 165 (359)
Q Consensus 140 ~~ai~la~~a~~~Gadav~v~pP~y~ 165 (359)
++.++.++.++++|++++|+-+-.+.
T Consensus 223 ~em~~ra~~~~~~G~~~~mv~~~~~G 248 (406)
T cd08207 223 DEMRRNHDLVVEAGGTCVMVSLNSVG 248 (406)
T ss_pred HHHHHHHHHHHHhCCCeEEEeccccc
Confidence 99999999999999999999865553
No 52
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=95.03 E-value=0.25 Score=47.15 Aligned_cols=84 Identities=11% Similarity=0.065 Sum_probs=64.5
Q ss_pred CHHHHHHHHHHHHHCCCCEEEEccCccCcC-----CCCHHHHHHHHHHHHHhhCCCcEEEEecCC-CCHHHHHHHHHHHH
Q 018253 77 DLEAYDDLVNMQIVNGAEGMIVGGTTGEGQ-----LMSWDEHIMLIGHTVNCFGASVKVIGNTGS-NSTREAIHATEQGF 150 (359)
Q Consensus 77 D~~~l~~li~~li~~Gv~Gl~v~GstGE~~-----~LT~~Er~~li~~~v~~~~grvpViagvg~-~st~~ai~la~~a~ 150 (359)
+.+.+.+.++.+.+.|+++|-++.++--.. ....+.-.++++.+.+.+ ++||++.++. .+.++..++++.++
T Consensus 109 ~~~~~~~~a~~~~~~G~d~ielN~~cP~~~~~~~~~~~~~~~~eiv~~vr~~~--~~pv~vKl~~~~~~~~~~~~a~~l~ 186 (289)
T cd02810 109 SKEDYVELARKIERAGAKALELNLSCPNVGGGRQLGQDPEAVANLLKAVKAAV--DIPLLVKLSPYFDLEDIVELAKAAE 186 (289)
T ss_pred CHHHHHHHHHHHHHhCCCEEEEEcCCCCCCCCcccccCHHHHHHHHHHHHHcc--CCCEEEEeCCCCCHHHHHHHHHHHH
Confidence 668889999999999999999886542211 223455567787777766 6899998774 45668999999999
Q ss_pred hCCCCEEEEcCC
Q 018253 151 AVGMHAALHINP 162 (359)
Q Consensus 151 ~~Gadav~v~pP 162 (359)
++|+|++.+..-
T Consensus 187 ~~Gad~i~~~~~ 198 (289)
T cd02810 187 RAGADGLTAINT 198 (289)
T ss_pred HcCCCEEEEEcc
Confidence 999999998754
No 53
>cd08208 RLP_Photo Ribulose bisphosphate carboxylase like proteins from phototrophic bacteria. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions. The specific function of this subgroup is unknown.
Probab=95.01 E-value=0.94 Score=46.05 Aligned_cols=99 Identities=12% Similarity=0.081 Sum_probs=72.9
Q ss_pred eecCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhh----CCCcEEEEecCCCCHHH
Q 018253 66 IKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCF----GASVKVIGNTGSNSTRE 141 (359)
Q Consensus 66 l~TPF~~dg~ID~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~----~grvpViagvg~~st~~ 141 (359)
+-|-+++.--+.-+.+.+++..+...|+|=+====.-........+||...+-.+++.+ +.++-..+++++ ++++
T Consensus 163 ~gtiiKPklGLsp~~~a~~~y~~~~GGvD~IKDDE~l~~q~f~p~~eRv~~~~~ai~~a~~eTG~~~~ya~NiT~-~~~e 241 (424)
T cd08208 163 FFGVIKPNIGLPPGEFAELGYQSWLGGLDIAKDDEMLADVDWCPLEERAALLGKARRRAEAETGVPKIYLANITD-EVDR 241 (424)
T ss_pred eeeeecccccCCHHHHHHHHHHHHcCCcccccccccccCCCCCCHHHHHHHHHHHHHHHHHhhCCcceEEEEccC-CHHH
Confidence 44455665458999999999999999988332111345666778899998776666643 344444568887 7999
Q ss_pred HHHHHHHHHhCCCCEEEEcCCCCC
Q 018253 142 AIHATEQGFAVGMHAALHINPYYG 165 (359)
Q Consensus 142 ai~la~~a~~~Gadav~v~pP~y~ 165 (359)
.+++++.++++|++++|+-+-.+.
T Consensus 242 m~~ra~~a~~~G~~~vmv~~~~~G 265 (424)
T cd08208 242 LMELHDVAVRNGANALLINAMPVG 265 (424)
T ss_pred HHHHHHHHHHhCCCEEEEeeeccc
Confidence 999999999999999999855553
No 54
>cd08213 RuBisCO_large_III Ribulose bisphosphate carboxylase large chain, Form III. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV , which differ in their taxonomic distribution and subunit composition. Form III is only found in archaea and forms large subunit oligomers (dimers or decamers) that do not include small subunits.
Probab=95.00 E-value=0.77 Score=46.55 Aligned_cols=100 Identities=13% Similarity=0.042 Sum_probs=74.0
Q ss_pred eeecCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhh----CCCcEEEEecCCCCHH
Q 018253 65 AIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCF----GASVKVIGNTGSNSTR 140 (359)
Q Consensus 65 al~TPF~~dg~ID~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~----~grvpViagvg~~st~ 140 (359)
-+-|-+++.--+.-+.+.+++..+...|+|=+====.-........+||...+-.+++.+ +.++-..+++++. ++
T Consensus 133 L~gtiiKP~~Glsp~~~a~~~y~~~~GGvD~iKDDE~l~~q~~~p~~~Rv~~~~~a~~~a~~eTG~~~~y~~NiT~~-~~ 211 (412)
T cd08213 133 LLGTVPKPKVGLSPEEHAEVAYEALVGGVDLVKDDENLTSQPFNRFEERAKESLKARDKAEAETGERKAYLANITAP-VR 211 (412)
T ss_pred eEEeecCcccCCCHHHHHHHHHHHHhcCCcccccCccCCCCCCCCHHHHHHHHHHHHHHHHHhhCCcceEEEEecCC-HH
Confidence 344556666558999999999999999998332111334566778999998887776643 3444456688865 99
Q ss_pred HHHHHHHHHHhCCCCEEEEcCCCCC
Q 018253 141 EAIHATEQGFAVGMHAALHINPYYG 165 (359)
Q Consensus 141 ~ai~la~~a~~~Gadav~v~pP~y~ 165 (359)
+.++.++.++++|++++|+-+-.+.
T Consensus 212 em~~ra~~a~e~G~~~~mv~~~~~G 236 (412)
T cd08213 212 EMERRAELVADLGGKYVMIDVVVAG 236 (412)
T ss_pred HHHHHHHHHHHhCCCeEEeeccccC
Confidence 9999999999999999998755553
No 55
>cd04737 LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding domain. LOX is a member of the family of FMN-containing alpha-hydroxyacid oxidases and catalyzes the oxidation of l-lactate using molecular oxygen to generate pyruvate and H2O2. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=94.96 E-value=0.17 Score=50.21 Aligned_cols=95 Identities=17% Similarity=0.162 Sum_probs=65.8
Q ss_pred HHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCCCHHHHHHHHHHHHhCCCCEEEEcCC
Q 018253 83 DLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINP 162 (359)
Q Consensus 83 ~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~st~~ai~la~~a~~~Gadav~v~pP 162 (359)
..++.+.+.|+++|++.++-|....-...- .+.+..+.+.+++++|||+.=|=.+-.+.++.. .+|||+|++-.|
T Consensus 233 ~dA~~a~~~G~d~I~vsnhGGr~ld~~~~~-~~~l~~i~~a~~~~i~vi~dGGIr~g~Di~kaL----alGA~~V~iGr~ 307 (351)
T cd04737 233 EDADVAINAGADGIWVSNHGGRQLDGGPAS-FDSLPEIAEAVNHRVPIIFDSGVRRGEHVFKAL----ASGADAVAVGRP 307 (351)
T ss_pred HHHHHHHHcCCCEEEEeCCCCccCCCCchH-HHHHHHHHHHhCCCCeEEEECCCCCHHHHHHHH----HcCCCEEEECHH
Confidence 445677889999999987766542222222 234455566677789999855544555555443 389999999999
Q ss_pred CCCC---CCHHHHHHHHHHHHhc
Q 018253 163 YYGK---TSLEGLISHFDSVLSM 182 (359)
Q Consensus 163 ~y~~---~s~~~l~~yf~~Ia~a 182 (359)
+.+. ..++++..+++.+.+.
T Consensus 308 ~l~~la~~G~~gv~~~l~~l~~E 330 (351)
T cd04737 308 VLYGLALGGAQGVASVLEHLNKE 330 (351)
T ss_pred HHHHHhhchHHHHHHHHHHHHHH
Confidence 8764 3678888888887664
No 56
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=94.95 E-value=1.2 Score=43.53 Aligned_cols=86 Identities=10% Similarity=-0.036 Sum_probs=63.4
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEccCc----------cCcCCCCHHHHHHHHHHHHHhhCCCcEEEEe--cCCCCHHHHH
Q 018253 76 FDLEAYDDLVNMQIVNGAEGMIVGGTT----------GEGQLMSWDEHIMLIGHTVNCFGASVKVIGN--TGSNSTREAI 143 (359)
Q Consensus 76 ID~~~l~~li~~li~~Gv~Gl~v~Gst----------GE~~~LT~~Er~~li~~~v~~~~grvpViag--vg~~st~~ai 143 (359)
-|.+.+.+-+..+.+.|.++|=++... |....-..+.=.++++.+++.++.++||.+= +|-.+.++++
T Consensus 72 ~~p~~~~~aA~~~~~~g~d~IdiN~GCP~~~v~~~g~Gs~Ll~~~~~~~eiv~avr~~~~~~~pVsvKiR~g~~~~~~~~ 151 (312)
T PRK10550 72 QYPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQGAKAMREAVPAHLPVTVKVRLGWDSGERKF 151 (312)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEeCCCCchHHhcCCCchHhhcCHHHHHHHHHHHHHhcCCCcceEEEEECCCCCchHHH
Confidence 567888888888888999998887543 2233344555566777777766556888775 4444556799
Q ss_pred HHHHHHHhCCCCEEEEcC
Q 018253 144 HATEQGFAVGMHAALHIN 161 (359)
Q Consensus 144 ~la~~a~~~Gadav~v~p 161 (359)
++++.+++.|+|++.+.+
T Consensus 152 ~~a~~l~~~Gvd~i~Vh~ 169 (312)
T PRK10550 152 EIADAVQQAGATELVVHG 169 (312)
T ss_pred HHHHHHHhcCCCEEEECC
Confidence 999999999999998875
No 57
>TIGR02708 L_lactate_ox L-lactate oxidase. Members of this protein oxidize L-lactate to pyruvate, reducing molecular oxygen to hydrogen peroxide. The enzyme is known in Aerococcus viridans, Streptococcus iniae, and some strains of Streptococcus pyogenes where it appears to contribute to virulence.
Probab=94.84 E-value=0.15 Score=50.88 Aligned_cols=95 Identities=13% Similarity=0.110 Sum_probs=66.3
Q ss_pred HHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCCCHHHHHHHHHHHHhCCCCEEEEcCC
Q 018253 83 DLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINP 162 (359)
Q Consensus 83 ~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~st~~ai~la~~a~~~Gadav~v~pP 162 (359)
..++.+++.|++||.|.+..|....-...... .+..+++.+++++|||+.=|=.+-.+.+ + |.++|||++++.-|
T Consensus 240 eda~~a~~~Gvd~I~VS~HGGrq~~~~~a~~~-~L~ei~~av~~~i~vi~dGGIr~g~Dv~---K-aLalGAd~V~igR~ 314 (367)
T TIGR02708 240 EDADRALKAGASGIWVTNHGGRQLDGGPAAFD-SLQEVAEAVDKRVPIVFDSGVRRGQHVF---K-ALASGADLVALGRP 314 (367)
T ss_pred HHHHHHHHcCcCEEEECCcCccCCCCCCcHHH-HHHHHHHHhCCCCcEEeeCCcCCHHHHH---H-HHHcCCCEEEEcHH
Confidence 34456778999999999999876544443333 4445566677889999855433444443 2 33399999999999
Q ss_pred CCCC---CCHHHHHHHHHHHHhc
Q 018253 163 YYGK---TSLEGLISHFDSVLSM 182 (359)
Q Consensus 163 ~y~~---~s~~~l~~yf~~Ia~a 182 (359)
+.+. ..++++...++.+.+.
T Consensus 315 ~l~~la~~G~~gv~~~l~~l~~E 337 (367)
T TIGR02708 315 VIYGLALGGSQGARQVFEYLNKE 337 (367)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHH
Confidence 7653 4788888888877654
No 58
>cd04741 DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) class 1A FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=94.79 E-value=0.21 Score=48.27 Aligned_cols=87 Identities=15% Similarity=0.087 Sum_probs=61.8
Q ss_pred CHHHHHHHHHHHHHC--CCCEEEEccCccCc------------------CCCC----HHHHHHHHHHHHHhhCCCcEEEE
Q 018253 77 DLEAYDDLVNMQIVN--GAEGMIVGGTTGEG------------------QLMS----WDEHIMLIGHTVNCFGASVKVIG 132 (359)
Q Consensus 77 D~~~l~~li~~li~~--Gv~Gl~v~GstGE~------------------~~LT----~~Er~~li~~~v~~~~grvpVia 132 (359)
|.+.+.++++.+.+. |++||.+.-|++-. --+| ...-.+.+..+.+.+++++|||+
T Consensus 169 ~~~~~~~~a~~l~~~~~G~~gi~~~Nt~~~~~~id~~~~~~~~~~~~~~gG~SG~~i~~~al~~v~~~~~~~~~~ipIig 248 (294)
T cd04741 169 DPAQFDTLAEALNAFACPISFITATNTLGNGLVLDPERETVVLKPKTGFGGLAGAYLHPLALGNVRTFRRLLPSEIQIIG 248 (294)
T ss_pred CHHHHHHHHHHHhccccCCcEEEEEccCCccccccCCCCCcccCCCCCCCCcCchhhHHHHHHHHHHHHHhcCCCCCEEE
Confidence 667788899988888 99999976555321 1122 22234556666677766799987
Q ss_pred ecCCCCHHHHHHHHHHHHhCCCCEEEEcCCCCC-CC
Q 018253 133 NTGSNSTREAIHATEQGFAVGMHAALHINPYYG-KT 167 (359)
Q Consensus 133 gvg~~st~~ai~la~~a~~~Gadav~v~pP~y~-~~ 167 (359)
.=|=.+.++++++.+ +|||+|++..-.++ .+
T Consensus 249 ~GGI~s~~da~e~l~----aGA~~Vqv~ta~~~~gp 280 (294)
T cd04741 249 VGGVLDGRGAFRMRL----AGASAVQVGTALGKEGP 280 (294)
T ss_pred eCCCCCHHHHHHHHH----cCCCceeEchhhhhcCc
Confidence 656667888888885 79999999988764 44
No 59
>COG2513 PrpB PEP phosphonomutase and related enzymes [Carbohydrate transport and metabolism]
Probab=94.71 E-value=1.4 Score=42.44 Aligned_cols=142 Identities=22% Similarity=0.169 Sum_probs=89.7
Q ss_pred CCceEEeeecCCCCC---CCCCHHHHHHHHHHHHHCCCCEEEEccCccC--------cCCCCHHHHHHHHHHHHHhhCCC
Q 018253 59 ALRLITAIKTPYLPD---GRFDLEAYDDLVNMQIVNGAEGMIVGGTTGE--------GQLMSWDEHIMLIGHTVNCFGAS 127 (359)
Q Consensus 59 ~~Gi~~al~TPF~~d---g~ID~~~l~~li~~li~~Gv~Gl~v~GstGE--------~~~LT~~Er~~li~~~v~~~~gr 127 (359)
.+.|..+.-.|..-| |==+.....+.|..+++.|+.|+-+=-..+- -...+.+|..+=++.+++.....
T Consensus 70 vrrI~~a~~lPv~vD~dtGfG~~~nvartV~~~~~aG~agi~iEDq~~pk~cgh~~gk~l~~~~e~v~rIkAa~~a~~~~ 149 (289)
T COG2513 70 ARRITDAVDLPVLVDIDTGFGEALNVARTVRELEQAGAAGIHIEDQVGPKRCGHLPGKELVSIDEMVDRIKAAVEARRDP 149 (289)
T ss_pred HHHHHhhcCCceEEeccCCCCcHHHHHHHHHHHHHcCcceeeeeecccchhcCCCCCCCcCCHHHHHHHHHHHHHhccCC
Confidence 445666666666544 2223677889999999999999988666653 45678999999999999876542
Q ss_pred cEEEEe----cCCCCHHHHHHHHHHHHhCCCCEEEEcCCCCCCCCHHHHHHHHHHHHhcCCeEEEeCCCCCCCCCCHHHH
Q 018253 128 VKVIGN----TGSNSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSMGPTIIYNVPSRTGQDIPPRVI 203 (359)
Q Consensus 128 vpViag----vg~~st~~ai~la~~a~~~Gadav~v~pP~y~~~s~~~l~~yf~~Ia~a~PiiiYn~P~~tg~~ls~e~l 203 (359)
-=||+. .....++++|++++.+.++|||++.. |-. .+.+++.++-+++.--+|+-+=-++. | -.+|.+.+
T Consensus 150 ~fvi~ARTda~~~~~ld~AI~Ra~AY~eAGAD~if~--~al--~~~e~i~~f~~av~~pl~~N~t~~g~-t-p~~~~~~L 223 (289)
T COG2513 150 DFVIIARTDALLVEGLDDAIERAQAYVEAGADAIFP--EAL--TDLEEIRAFAEAVPVPLPANITEFGK-T-PLLTVAEL 223 (289)
T ss_pred CeEEEeehHHHHhccHHHHHHHHHHHHHcCCcEEcc--ccC--CCHHHHHHHHHhcCCCeeeEeeccCC-C-CCcCHHHH
Confidence 223321 12334899999999999999998754 333 34555555544444112333332221 1 13555555
Q ss_pred HHH
Q 018253 204 HTM 206 (359)
Q Consensus 204 ~~L 206 (359)
+++
T Consensus 224 ~~~ 226 (289)
T COG2513 224 AEL 226 (289)
T ss_pred Hhc
Confidence 554
No 60
>PRK04208 rbcL ribulose bisophosphate carboxylase; Reviewed
Probab=94.70 E-value=1.3 Score=45.54 Aligned_cols=99 Identities=11% Similarity=0.099 Sum_probs=74.0
Q ss_pred eecCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHh----hCCCcEEEEecCCCCHHH
Q 018253 66 IKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNC----FGASVKVIGNTGSNSTRE 141 (359)
Q Consensus 66 l~TPF~~dg~ID~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~----~~grvpViagvg~~st~~ 141 (359)
+-|-+++.--+.-+.+.+++..+...|+|=|====.-+.......+||...+-.+++. ++.+.-..+++++.++++
T Consensus 163 ~gtiiKP~~GLsp~~~a~~~y~~~~GGvD~IKDDE~l~~q~f~p~~~Rv~~~~~a~~~a~~eTG~~k~y~~NiT~~~~~e 242 (468)
T PRK04208 163 LGTTPKPKLGLSAKNYGRVVYEALRGGLDFTKDDENLNSQPFNRWRDRFLFVMEAIDKAEAETGERKGHYLNVTAPTMEE 242 (468)
T ss_pred EEEeeccccCCCHHHHHHHHHHHHhcCCceeeCCCCCCCCCCccHHHHHHHHHHHHHHHHHhhCCcceEEEecCCCCHHH
Confidence 4444566545899999999999999998844322234556677889999877666654 334444577999877999
Q ss_pred HHHHHHHHHhCCCCEEEEcCCCC
Q 018253 142 AIHATEQGFAVGMHAALHINPYY 164 (359)
Q Consensus 142 ai~la~~a~~~Gadav~v~pP~y 164 (359)
.++.++.+.+.|++++|+-+-.+
T Consensus 243 m~~ra~~~~e~G~~~~mv~~~~~ 265 (468)
T PRK04208 243 MYKRAEFAKELGSPIVMIDVVTA 265 (468)
T ss_pred HHHHHHHHHHhCCCEEEEecccc
Confidence 99999999999999999875444
No 61
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=94.65 E-value=0.78 Score=44.16 Aligned_cols=85 Identities=8% Similarity=0.023 Sum_probs=68.0
Q ss_pred CCHHHHHHHHHHHHHC--CCCEEEEccCc------cCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCCCHHHHHHHHH
Q 018253 76 FDLEAYDDLVNMQIVN--GAEGMIVGGTT------GEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATE 147 (359)
Q Consensus 76 ID~~~l~~li~~li~~--Gv~Gl~v~Gst------GE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~st~~ai~la~ 147 (359)
-|.+.+.+.++.+.+. ++++|-+|-+. |....-+.+...++++.+.+.+ ++||++=++ .+.++.+++++
T Consensus 100 ~~~~~~~~~a~~~~~~~~~~d~ielN~~cP~~~~~g~~l~~~~~~~~eiv~~vr~~~--~~pv~vKi~-~~~~~~~~~a~ 176 (300)
T TIGR01037 100 SSVEEFAEVAEKLEKAPPYVDAYELNLSCPHVKGGGIAIGQDPELSADVVKAVKDKT--DVPVFAKLS-PNVTDITEIAK 176 (300)
T ss_pred CCHHHHHHHHHHHHhccCccCEEEEECCCCCCCCCccccccCHHHHHHHHHHHHHhc--CCCEEEECC-CChhhHHHHHH
Confidence 4578888999988765 49999997663 5666667788888898888766 579998876 36789999999
Q ss_pred HHHhCCCCEEEEcCCC
Q 018253 148 QGFAVGMHAALHINPY 163 (359)
Q Consensus 148 ~a~~~Gadav~v~pP~ 163 (359)
.++++|+|++.+..-.
T Consensus 177 ~l~~~G~d~i~v~nt~ 192 (300)
T TIGR01037 177 AAEEAGADGLTLINTL 192 (300)
T ss_pred HHHHcCCCEEEEEccC
Confidence 9999999999887543
No 62
>cd08148 RuBisCO_large Ribulose bisphosphate carboxylase large chain. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions.
Probab=94.61 E-value=0.9 Score=45.36 Aligned_cols=100 Identities=13% Similarity=0.094 Sum_probs=72.2
Q ss_pred eeecCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHh----hCCCcEEEEecCCCCHH
Q 018253 65 AIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNC----FGASVKVIGNTGSNSTR 140 (359)
Q Consensus 65 al~TPF~~dg~ID~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~----~~grvpViagvg~~st~ 140 (359)
-+-|-+++.--+.-+.+.+++..+...|+|=|====.-........+||...+-.+++. ++.++--.+++++ +++
T Consensus 129 l~gtiiKP~~Glsp~~~a~~~y~~~~GG~D~IKDDE~l~~q~~~p~~eRv~~~~~a~~~a~~eTG~~~~y~~NiT~-~~~ 207 (366)
T cd08148 129 LVGTIIKPKLGLNPKYTAEAAYAAALGGLDLIKDDETLTDQPFCPLRDRITEVAAALDRVQEETGEKKLYAVNVTA-GTF 207 (366)
T ss_pred eeEeecccccCCCHHHHHHHHHHHHhCCCCccccccccCCCCCCcHHHHHHHHHHHHHHHHHhhCCcceEEEEccC-CHH
Confidence 34555666644889999999999999998833211134556677889996666555554 4444445668885 569
Q ss_pred HHHHHHHHHHhCCCCEEEEcCCCCC
Q 018253 141 EAIHATEQGFAVGMHAALHINPYYG 165 (359)
Q Consensus 141 ~ai~la~~a~~~Gadav~v~pP~y~ 165 (359)
|.++.++.++++|++++|+-+-.+.
T Consensus 208 em~~ra~~~~~~G~~~~mv~~~~~G 232 (366)
T cd08148 208 EIIERAERALELGANMLMVDVLTAG 232 (366)
T ss_pred HHHHHHHHHHHhCCCEEEEeccccc
Confidence 9999999999999999999855553
No 63
>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family. DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.
Probab=94.60 E-value=2.2 Score=38.75 Aligned_cols=139 Identities=18% Similarity=0.116 Sum_probs=86.7
Q ss_pred eEEeeecCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCC-CcEEEEecCCCCHH
Q 018253 62 LITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGA-SVKVIGNTGSNSTR 140 (359)
Q Consensus 62 i~~al~TPF~~dg~ID~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~g-rvpViagvg~~st~ 140 (359)
+......-| +.|.-..+.....++..++.|++.+-+.-..|-..+=..++-.+-+..+++.+.+ -++||...+..+.+
T Consensus 53 ~~v~~~~~f-p~g~~~~~~k~~eve~A~~~GAdevdvv~~~g~~~~~~~~~~~~ei~~v~~~~~g~~lkvI~e~~~l~~~ 131 (203)
T cd00959 53 VKVCTVIGF-PLGATTTEVKVAEAREAIADGADEIDMVINIGALKSGDYEAVYEEIAAVVEACGGAPLKVILETGLLTDE 131 (203)
T ss_pred cEEEEEEec-CCCCCcHHHHHHHHHHHHHcCCCEEEEeecHHHHhCCCHHHHHHHHHHHHHhcCCCeEEEEEecCCCCHH
Confidence 444444434 2344566777777999999999999888877743332335455555566666553 24457788888888
Q ss_pred HHHHHHHHHHhCCCCEEEEcCCCC-CCCCHHHHHHHHHHHHhcCCeEEEeCCCCCCCCCCHHHHHHHh
Q 018253 141 EAIHATEQGFAVGMHAALHINPYY-GKTSLEGLISHFDSVLSMGPTIIYNVPSRTGQDIPPRVIHTMA 207 (359)
Q Consensus 141 ~ai~la~~a~~~Gadav~v~pP~y-~~~s~~~l~~yf~~Ia~a~PiiiYn~P~~tg~~ls~e~l~~La 207 (359)
+-...+|.+.++|||.+=..+=|. ...+.+.+..+-+.+....||.+- -|.. +.+...++.
T Consensus 132 ~i~~a~ria~e~GaD~IKTsTG~~~~~at~~~v~~~~~~~~~~v~ik~a-----GGik-t~~~~l~~~ 193 (203)
T cd00959 132 EIIKACEIAIEAGADFIKTSTGFGPGGATVEDVKLMKEAVGGRVGVKAA-----GGIR-TLEDALAMI 193 (203)
T ss_pred HHHHHHHHHHHhCCCEEEcCCCCCCCCCCHHHHHHHHHHhCCCceEEEe-----CCCC-CHHHHHHHH
Confidence 889999999999999777664444 234555544443433323566554 2334 555555554
No 64
>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family. DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.
Probab=94.51 E-value=1.7 Score=39.55 Aligned_cols=126 Identities=15% Similarity=0.133 Sum_probs=82.8
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCC-cEE--EEec--CCCCHHHHHHHHHHHH
Q 018253 76 FDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGAS-VKV--IGNT--GSNSTREAIHATEQGF 150 (359)
Q Consensus 76 ID~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~gr-vpV--iagv--g~~st~~ai~la~~a~ 150 (359)
.-.+.++++++..++.|++++++. ...++.+.+...+. +.+ .+|. +...++.-+.-+++|.
T Consensus 14 ~t~~~i~~~~~~a~~~~~~av~v~--------------p~~v~~~~~~l~~~~~~v~~~~~fp~g~~~~~~k~~eve~A~ 79 (203)
T cd00959 14 ATEEDIRKLCDEAKEYGFAAVCVN--------------PCFVPLAREALKGSGVKVCTVIGFPLGATTTEVKVAEAREAI 79 (203)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEc--------------HHHHHHHHHHcCCCCcEEEEEEecCCCCCcHHHHHHHHHHHH
Confidence 367889999999999999999876 33444455544432 222 2221 2345666777799999
Q ss_pred hCCCCEEEEcCCCC-C-CCCHHHHHHHHHHHHhc---CCeE-EEeCCCCCCCCCCHHHHHHHhc---CCCeEEEeccCc
Q 018253 151 AVGMHAALHINPYY-G-KTSLEGLISHFDSVLSM---GPTI-IYNVPSRTGQDIPPRVIHTMAQ---SPNLAGVKECVG 220 (359)
Q Consensus 151 ~~Gadav~v~pP~y-~-~~s~~~l~~yf~~Ia~a---~Pii-iYn~P~~tg~~ls~e~l~~La~---~pnivGiK~ss~ 220 (359)
+.|||++-++.++- . ....+.+.+...++.+. .|+. ++..+. ++++.+.+.++ .-..-.||-++|
T Consensus 80 ~~GAdevdvv~~~g~~~~~~~~~~~~ei~~v~~~~~g~~lkvI~e~~~-----l~~~~i~~a~ria~e~GaD~IKTsTG 153 (203)
T cd00959 80 ADGADEIDMVINIGALKSGDYEAVYEEIAAVVEACGGAPLKVILETGL-----LTDEEIIKACEIAIEAGADFIKTSTG 153 (203)
T ss_pred HcCCCEEEEeecHHHHhCCCHHHHHHHHHHHHHhcCCCeEEEEEecCC-----CCHHHHHHHHHHHHHhCCCEEEcCCC
Confidence 99999998887753 2 34557788888888875 4653 455432 35676666553 345666888754
No 65
>PRK06852 aldolase; Validated
Probab=94.40 E-value=3 Score=40.64 Aligned_cols=165 Identities=14% Similarity=0.113 Sum_probs=99.0
Q ss_pred CHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCC----------CHHHHHHHH
Q 018253 77 DLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSN----------STREAIHAT 146 (359)
Q Consensus 77 D~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~----------st~~ai~la 146 (359)
+.+-.+.+++..++.|+++++.. +-+++...... .++|+|+.+++. .....+--.
T Consensus 57 gl~dp~~~i~~~~~~g~dav~~~--------------~G~l~~~~~~~-~~~~lIlkl~~~t~l~~~~~~~p~~~l~~sV 121 (304)
T PRK06852 57 DDADPEHLFRIASKAKIGVFATQ--------------LGLIARYGMDY-PDVPYLVKLNSKTNLVKTSQRDPLSRQLLDV 121 (304)
T ss_pred ccCCHHHHHHHHHhcCCCEEEeC--------------HHHHHhhcccc-CCCcEEEEECCCCCcCCcccCCccccceecH
Confidence 55567788999999999999865 45555543333 478999987652 111233346
Q ss_pred HHHHhCC------CCEEEEcCCCCCCCCHHHHHHHHHHHHhc-----CCeEEEeCCCCCC--CCCCHHHHH---HHh-cC
Q 018253 147 EQGFAVG------MHAALHINPYYGKTSLEGLISHFDSVLSM-----GPTIIYNVPSRTG--QDIPPRVIH---TMA-QS 209 (359)
Q Consensus 147 ~~a~~~G------adav~v~pP~y~~~s~~~l~~yf~~Ia~a-----~PiiiYn~P~~tg--~~ls~e~l~---~La-~~ 209 (359)
+.|.++| ||||.+.- |.....+.+.++...+|++. +|+++.=+|.--. ..-.+++++ |++ ++
T Consensus 122 eeAvrlG~~~~~~AdAV~v~v-~~Gs~~E~~ml~~l~~v~~ea~~~GlPll~~~yprG~~i~~~~~~~~ia~aaRiaaEL 200 (304)
T PRK06852 122 EQVVEFKENSGLNILGVGYTI-YLGSEYESEMLSEAAQIIYEAHKHGLIAVLWIYPRGKAVKDEKDPHLIAGAAGVAACL 200 (304)
T ss_pred HHHHhcCCccCCCceEEEEEE-ecCCHHHHHHHHHHHHHHHHHHHhCCcEEEEeeccCcccCCCccHHHHHHHHHHHHHH
Confidence 7788888 88998862 22334456677777777753 6998766663211 123445544 555 55
Q ss_pred -CCeEEEeccC----ch-hhH---hhhhCCceEEEecCCch----hh---hhhhh-cCCceeecc
Q 018253 210 -PNLAGVKECV----GN-DRV---EHYTGNGIVVWSGNDDQ----CH---DARWN-HGATGVISV 257 (359)
Q Consensus 210 -pnivGiK~ss----~d-~~l---~~~~~~~~~v~~G~d~~----~~---~~~l~-~Ga~G~is~ 257 (359)
..|+=+|++. ++ ..+ .+.+++--.++.|.... ++ ...+. .|+.|++.|
T Consensus 201 GADIVKv~y~~~~~~g~~e~f~~vv~~~g~vpVviaGG~k~~~~e~L~~v~~ai~~aGa~Gv~~G 265 (304)
T PRK06852 201 GADFVKVNYPKKEGANPAELFKEAVLAAGRTKVVCAGGSSTDPEEFLKQLYEQIHISGASGNATG 265 (304)
T ss_pred cCCEEEecCCCcCCCCCHHHHHHHHHhCCCCcEEEeCCCCCCHHHHHHHHHHHHHHcCCceeeec
Confidence 4788888873 33 233 33332322456665431 21 22356 788888766
No 66
>PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism. 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde The family also includes a group of related bacterial proteins of unknown function, see examples Q57843 from SWISSPROT and P76143 from SWISSPROT.; GO: 0016829 lyase activity; PDB: 2A4A_A 1VCV_B 1P1X_A 1KTN_B 1JCL_A 1JCJ_A 1MZH_A 3GKF_D 3GLC_L 3GND_N ....
Probab=94.38 E-value=0.21 Score=46.40 Aligned_cols=126 Identities=17% Similarity=0.198 Sum_probs=83.6
Q ss_pred HHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCC---CcEEEEecC--CCCHHHH-----HHHHHH
Q 018253 79 EAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGA---SVKVIGNTG--SNSTREA-----IHATEQ 148 (359)
Q Consensus 79 ~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~g---rvpViagvg--~~st~~a-----i~la~~ 148 (359)
+.++++++..++.|++++++.-... ..+.+...+ +++++++.. ...++.- +.-+++
T Consensus 19 ~~~~~~~~~a~~~~~~av~v~p~~~--------------~~~~~~~~~~~~~~~~vi~fp~g~~~~~~k~~~~~~~~ve~ 84 (236)
T PF01791_consen 19 EDIKKLCREAIEYGFDAVCVTPGYV--------------KPAAELLAGSGVKVGLVIGFPFGTSTTEPKGYDQIVAEVEE 84 (236)
T ss_dssp HHHHHHHHHHHHHTSSEEEEEGGGH--------------HHHHHHSTTSTSEEEEEESTTTSSSTHHHHTCEEEHHHHHH
T ss_pred hhHHHHHHHHHHhCCCEEEECHHHH--------------HHHHHHhhccccccceEEEeCCCCCccccccccchHHHHHH
Confidence 4789999999999999999876543 344455555 788999874 4466666 799999
Q ss_pred HHhCCCCEEEEcCCCC--CCCCHHHHHHHHHHHHhc-----CCeEEEeCCCCCCCCC----CHHHHHHHhc---CCCeEE
Q 018253 149 GFAVGMHAALHINPYY--GKTSLEGLISHFDSVLSM-----GPTIIYNVPSRTGQDI----PPRVIHTMAQ---SPNLAG 214 (359)
Q Consensus 149 a~~~Gadav~v~pP~y--~~~s~~~l~~yf~~Ia~a-----~PiiiYn~P~~tg~~l----s~e~l~~La~---~pnivG 214 (359)
|.+.|||++-++.++- .....+...+-.+++.+. +|+|+--.| ++..+ .++.+.+.++ .-..--
T Consensus 85 A~~~GAd~vd~vi~~~~~~~~~~~~~~~~i~~v~~~~~~~gl~vIlE~~l--~~~~~~~~~~~~~I~~a~ria~e~GaD~ 162 (236)
T PF01791_consen 85 AIRLGADEVDVVINYGALGSGNEDEVIEEIAAVVEECHKYGLKVILEPYL--RGEEVADEKKPDLIARAARIAAELGADF 162 (236)
T ss_dssp HHHTT-SEEEEEEEHHHHHTTHHHHHHHHHHHHHHHHHTSEEEEEEEECE--CHHHBSSTTHHHHHHHHHHHHHHTT-SE
T ss_pred HHHcCCceeeeeccccccccccHHHHHHHHHHHHHHHhcCCcEEEEEEec--CchhhcccccHHHHHHHHHHHHHhCCCE
Confidence 9999999998886652 233456677777777654 588877433 22221 4445554432 345555
Q ss_pred EeccCc
Q 018253 215 VKECVG 220 (359)
Q Consensus 215 iK~ss~ 220 (359)
+|-+.+
T Consensus 163 vKt~tg 168 (236)
T PF01791_consen 163 VKTSTG 168 (236)
T ss_dssp EEEE-S
T ss_pred EEecCC
Confidence 888777
No 67
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=94.30 E-value=4.7 Score=37.78 Aligned_cols=131 Identities=14% Similarity=0.177 Sum_probs=84.0
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCCEEEEc------cCccCcCC----------CCHHHHHHHHHHHHHhhCCCcEEEE
Q 018253 69 PYLPDGRFDLEAYDDLVNMQIVNGAEGMIVG------GTTGEGQL----------MSWDEHIMLIGHTVNCFGASVKVIG 132 (359)
Q Consensus 69 PF~~dg~ID~~~l~~li~~li~~Gv~Gl~v~------GstGE~~~----------LT~~Er~~li~~~v~~~~grvpVia 132 (359)
||---|--|++.+.+.++.+.+.|++.+=+. =.-|.+-- .|.+.-.++++.+.+.. ++|++.
T Consensus 4 ~y~~~G~P~~~~~~~~~~~l~~~Gad~iel~iPfsdPv~DG~~I~~a~~~al~~g~~~~~~~~~~~~vr~~~--~~pv~l 81 (242)
T cd04724 4 PYITAGDPDLETTLEILKALVEAGADIIELGIPFSDPVADGPVIQAASERALANGVTLKDVLELVKEIRKKN--TIPIVL 81 (242)
T ss_pred EEEeCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhhcC--CCCEEE
Confidence 4445677899999999999999999999877 34444322 22334455555555443 678655
Q ss_pred ecCCCCHHH--HHHHHHHHHhCCCCEEEEcCCCCCCCCHHHHHHHHHHHHhc-C-CeEEEeCCCCCCCCCCHHHHHHHhc
Q 018253 133 NTGSNSTRE--AIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSM-G-PTIIYNVPSRTGQDIPPRVIHTMAQ 208 (359)
Q Consensus 133 gvg~~st~~--ai~la~~a~~~Gadav~v~pP~y~~~s~~~l~~yf~~Ia~a-~-PiiiYn~P~~tg~~ls~e~l~~La~ 208 (359)
=+.-+..-. .-++.+.++++|+|++.+.. . ..|++.++.+.+.+. + ++++.+ |. -+.+.++.+.+
T Consensus 82 m~y~n~~~~~G~~~fi~~~~~aG~~giiipD--l---~~ee~~~~~~~~~~~g~~~i~~i~-P~-----T~~~~i~~i~~ 150 (242)
T cd04724 82 MGYYNPILQYGLERFLRDAKEAGVDGLIIPD--L---PPEEAEEFREAAKEYGLDLIFLVA-PT-----TPDERIKKIAE 150 (242)
T ss_pred EEecCHHHHhCHHHHHHHHHHCCCcEEEECC--C---CHHHHHHHHHHHHHcCCcEEEEeC-CC-----CCHHHHHHHHh
Confidence 334333222 25678888999999888842 1 136777777777776 4 555554 42 35677888875
Q ss_pred -CCCe
Q 018253 209 -SPNL 212 (359)
Q Consensus 209 -~pni 212 (359)
...+
T Consensus 151 ~~~~~ 155 (242)
T cd04724 151 LASGF 155 (242)
T ss_pred hCCCC
Confidence 4443
No 68
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=94.27 E-value=0.18 Score=48.68 Aligned_cols=87 Identities=11% Similarity=0.062 Sum_probs=61.9
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEccCccCcC--------------------CCCH-HH---HHHHHHHHHHhhCCCcEE
Q 018253 75 RFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQ--------------------LMSW-DE---HIMLIGHTVNCFGASVKV 130 (359)
Q Consensus 75 ~ID~~~l~~li~~li~~Gv~Gl~v~GstGE~~--------------------~LT~-~E---r~~li~~~v~~~~grvpV 130 (359)
+.|.+.+..+++.+.+.|++||.+.-|+..-. -+|- .. -.+.+..+.+.+++++||
T Consensus 176 ~~~~~~~~~~a~~~~~~Gadgi~~~Nt~~~~~~id~~~~~~~~~~~~~~~~gg~sG~a~~p~~l~~v~~~~~~~~~~ipI 255 (299)
T cd02940 176 TPNITDIREIARAAKEGGADGVSAINTVNSLMGVDLDGTPPAPGVEGKTTYGGYSGPAVKPIALRAVSQIARAPEPGLPI 255 (299)
T ss_pred CCCchhHHHHHHHHHHcCCCEEEEecccccccccccccCCccccccCCCCcCcccCCCcchHHHHHHHHHHHhcCCCCcE
Confidence 34556788889989999999998655553311 1111 11 156677777777778999
Q ss_pred EEecCCCCHHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 018253 131 IGNTGSNSTREAIHATEQGFAVGMHAALHINPYYG 165 (359)
Q Consensus 131 iagvg~~st~~ai~la~~a~~~Gadav~v~pP~y~ 165 (359)
|+.=|=.+.+++++... +|||+|++..-.++
T Consensus 256 ig~GGI~~~~da~~~l~----aGA~~V~i~ta~~~ 286 (299)
T cd02940 256 SGIGGIESWEDAAEFLL----LGASVVQVCTAVMN 286 (299)
T ss_pred EEECCCCCHHHHHHHHH----cCCChheEceeecc
Confidence 98666667888888763 99999999887665
No 69
>cd08209 RLP_DK-MTP-1-P-enolase 2,3-diketo-5-methylthiopentyl-1-phosphate enolase. Ribulose bisphosphate carboxylase like proteins (RLPs) similar to B. subtilis YkrW protein, have been identified as 2,3-diketo-5-methylthiopentyl-1-phosphate enolases. They catalyze the tautomerization of 2,3-diketo-5-methylthiopentane 1-phosphate (DK-MTP 1-P). This is an important step in the methionine salvage pathway in which 5-methylthio-D-ribose (MTR) derived from 5'-methylthioadenosine is converted to methionine.
Probab=94.27 E-value=1.8 Score=43.68 Aligned_cols=100 Identities=14% Similarity=0.048 Sum_probs=74.5
Q ss_pred eeecCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhh----CCCcEEEEecCCCCHH
Q 018253 65 AIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCF----GASVKVIGNTGSNSTR 140 (359)
Q Consensus 65 al~TPF~~dg~ID~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~----~grvpViagvg~~st~ 140 (359)
-+-|-+++.--+.-+.+.+++..+...|+|=|====.-........+||...+..+++.+ +.++--.+++++ +++
T Consensus 126 L~~tiiKP~~Glsp~~~a~~~y~~~~GGvD~IKDDE~l~~q~~~p~~eRv~a~~~a~~~a~~eTG~~~~ya~NiT~-~~~ 204 (391)
T cd08209 126 LLMSIFKGVLGLDLDDLAEQLREQALGGVDLIKDDEILFDNPLAPALERIRACRPVLQEVYEQTGRRTLYAVNLTG-PVF 204 (391)
T ss_pred eEEeeeccccCCCHHHHHHHHHHHHhCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhCCcceEEEEcCC-CHH
Confidence 344556665458999999999999999998332111345667778999988877777653 344445678886 589
Q ss_pred HHHHHHHHHHhCCCCEEEEcCCCCC
Q 018253 141 EAIHATEQGFAVGMHAALHINPYYG 165 (359)
Q Consensus 141 ~ai~la~~a~~~Gadav~v~pP~y~ 165 (359)
+.++.++.++++|++++|+-+-.+.
T Consensus 205 em~~ra~~~~~~G~~~~mv~~~~~G 229 (391)
T cd08209 205 TLKEKARRLVEAGANALLFNVFAYG 229 (391)
T ss_pred HHHHHHHHHHHhCCCEEEEeccccc
Confidence 9999999999999999999865553
No 70
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=94.25 E-value=1.3 Score=41.31 Aligned_cols=99 Identities=17% Similarity=0.150 Sum_probs=81.1
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCCCHHHHHHHHHHHHhCCC
Q 018253 75 RFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGM 154 (359)
Q Consensus 75 ~ID~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~st~~ai~la~~a~~~Ga 154 (359)
..|.+.+.++++.+.+.|++.+.+.-|+| .+++++-.++++.+.+..+. +++-++. +++..-++..+..|.++||
T Consensus 142 ~~~~~~l~~~~~~~~~~g~~~i~l~Dt~G---~~~P~~v~~li~~l~~~~~~-~~~~~H~-Hn~~gla~an~laA~~aG~ 216 (265)
T cd03174 142 KTDPEYVLEVAKALEEAGADEISLKDTVG---LATPEEVAELVKALREALPD-VPLGLHT-HNTLGLAVANSLAALEAGA 216 (265)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEechhcC---CcCHHHHHHHHHHHHHhCCC-CeEEEEe-CCCCChHHHHHHHHHHcCC
Confidence 57899999999999999999999999988 49999999999999987754 6666554 5788889999999999999
Q ss_pred CEEEEcCCCCC----CCCHHHHHHHHHH
Q 018253 155 HAALHINPYYG----KTSLEGLISHFDS 178 (359)
Q Consensus 155 dav~v~pP~y~----~~s~~~l~~yf~~ 178 (359)
+.+=..-.-.. ..+-|++..+++.
T Consensus 217 ~~id~s~~G~G~~~Gn~~~e~~~~~l~~ 244 (265)
T cd03174 217 DRVDGSVNGLGERAGNAATEDLVAALEG 244 (265)
T ss_pred CEEEeccccccccccCccHHHHHHHHHh
Confidence 99866655443 3456777777765
No 71
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed
Probab=94.25 E-value=0.14 Score=50.59 Aligned_cols=99 Identities=17% Similarity=0.240 Sum_probs=64.8
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEccCccCc------------CCCCH-HH---HHHHHHHHHHhhCCCcEEEEecCCCCH
Q 018253 76 FDLEAYDDLVNMQIVNGAEGMIVGGTTGEG------------QLMSW-DE---HIMLIGHTVNCFGASVKVIGNTGSNST 139 (359)
Q Consensus 76 ID~~~l~~li~~li~~Gv~Gl~v~GstGE~------------~~LT~-~E---r~~li~~~v~~~~grvpViagvg~~st 139 (359)
++.+.+..+++.+.+.|++||.+.+++-.. .-+|- .. -.+.+..+.+.+.+++|||+.=|=.+.
T Consensus 222 ~~~~~~~~ia~~l~~~Gadgi~~~nt~~~~~~~~~~~~~~~~gg~SG~~~~~~~l~~v~~l~~~~~~~ipIig~GGI~s~ 301 (344)
T PRK05286 222 LSDEELDDIADLALEHGIDGVIATNTTLSRDGLKGLPNADEAGGLSGRPLFERSTEVIRRLYKELGGRLPIIGVGGIDSA 301 (344)
T ss_pred CCHHHHHHHHHHHHHhCCcEEEEeCCccccccccccccCCCCCCcccHHHHHHHHHHHHHHHHHhCCCCCEEEECCCCCH
Confidence 555668889999999999999999987321 12332 21 334566666667778998864444466
Q ss_pred HHHHHHHHHHHhCCCCEEEEcCCCCCC-CC-HHHHHHHHHH
Q 018253 140 REAIHATEQGFAVGMHAALHINPYYGK-TS-LEGLISHFDS 178 (359)
Q Consensus 140 ~~ai~la~~a~~~Gadav~v~pP~y~~-~s-~~~l~~yf~~ 178 (359)
++++++.+ +|||+|++....+.. |. ...+.+.+++
T Consensus 302 eda~e~l~----aGAd~V~v~~~~~~~gP~~~~~i~~~L~~ 338 (344)
T PRK05286 302 EDAYEKIR----AGASLVQIYSGLIYEGPGLVKEIVRGLAR 338 (344)
T ss_pred HHHHHHHH----cCCCHHHHHHHHHHhCchHHHHHHHHHHH
Confidence 77776664 899999999887542 43 2334444433
No 72
>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase. This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum.
Probab=94.16 E-value=4.5 Score=37.12 Aligned_cols=167 Identities=13% Similarity=0.113 Sum_probs=94.1
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCCCHHHHHHHHHH
Q 018253 69 PYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQ 148 (359)
Q Consensus 69 PF~~dg~ID~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~st~~ai~la~~ 148 (359)
=+|+|-. +.+.+++..+.+.|+|+|+++||+|= |.++-.++++.+.+.. ++||+.=.|+.+.
T Consensus 4 ~iDP~k~---e~~~~ia~~v~~~gtDaI~VGGS~gv----t~~~~~~~v~~ik~~~--~lPvilfp~~~~~--------- 65 (205)
T TIGR01769 4 LIDPEKS---DEIEKIAKNAKDAGTDAIMVGGSLGI----VESNLDQTVKKIKKIT--NLPVILFPGNVNG--------- 65 (205)
T ss_pred ccCCCcH---HHHHHHHHHHHhcCCCEEEEcCcCCC----CHHHHHHHHHHHHhhc--CCCEEEECCCccc---------
Confidence 3444444 66777888999999999999999765 7788788888877753 7899986654321
Q ss_pred HHhCCCCEEEEcC------CCCCCCCHHHHHHHHHHHHhc-CCe--EEEeCCCCC-----C----CCCCHHHHHHHh---
Q 018253 149 GFAVGMHAALHIN------PYYGKTSLEGLISHFDSVLSM-GPT--IIYNVPSRT-----G----QDIPPRVIHTMA--- 207 (359)
Q Consensus 149 a~~~Gadav~v~p------P~y~~~s~~~l~~yf~~Ia~a-~Pi--iiYn~P~~t-----g----~~ls~e~l~~La--- 207 (359)
..-+||++++.. |+|.-..|-+...-.++.... .|. ++-| |..+ + -++++|.....+
T Consensus 66 -i~~~aD~~~~~sllns~~~~~i~g~~~~~~~~~~~~~~e~ip~gYiv~~-~~~~v~~v~~a~~ip~~~~e~~~~~a~aa 143 (205)
T TIGR01769 66 -LSRYADAVFFMSLLNSADTYFIVGAQILGAITILKLNLEVIPMAYLIVG-PGGAVGYVGKAREIPYNKPEIAAAYCLAA 143 (205)
T ss_pred -cCcCCCEEEEEEeecCCCcchhhhHHHHHHHHHHHcCCcccceEEEEEC-CCCceeeecCcccCCCCCHHHHHHHHHHH
Confidence 125699998864 666433222222111222222 452 2333 2222 1 236777766654
Q ss_pred c-C-CCeEEEeccCch-----h----hHhhhhCCceEEEecCC---chhhhhhhhcCCceeecc
Q 018253 208 Q-S-PNLAGVKECVGN-----D----RVEHYTGNGIVVWSGND---DQCHDARWNHGATGVISV 257 (359)
Q Consensus 208 ~-~-pnivGiK~ss~d-----~----~l~~~~~~~~~v~~G~d---~~~~~~~l~~Ga~G~is~ 257 (359)
+ + =.++-+.+.++- . ++++..+ ..++.|.. ..-....+..|+|+++.|
T Consensus 144 ~~~G~~~i~Le~~sGa~~~v~~e~i~~Vk~~~~--~Pv~vGGGIrs~e~a~~l~~~GAD~VVVG 205 (205)
T TIGR01769 144 KYFGMKWVYLEAGSGASYPVNPETISLVKKASG--IPLIVGGGIRSPEIAYEIVLAGADAIVTG 205 (205)
T ss_pred HHcCCCEEEEEcCCCCCCCCCHHHHHHHHHhhC--CCEEEeCCCCCHHHHHHHHHcCCCEEEeC
Confidence 3 2 245566664442 1 2334333 33444432 122233346799998754
No 73
>COG3142 CutC Uncharacterized protein involved in copper resistance [Inorganic ion transport and metabolism]
Probab=94.13 E-value=0.14 Score=47.48 Aligned_cols=69 Identities=17% Similarity=0.297 Sum_probs=57.4
Q ss_pred CCceEEeeecCCCCCCCCCHHHHHHHH------------------------HHHHHCCCCEEEEccCccCcCCCCHHHHH
Q 018253 59 ALRLITAIKTPYLPDGRFDLEAYDDLV------------------------NMQIVNGAEGMIVGGTTGEGQLMSWDEHI 114 (359)
Q Consensus 59 ~~Gi~~al~TPF~~dg~ID~~~l~~li------------------------~~li~~Gv~Gl~v~GstGE~~~LT~~Er~ 114 (359)
..||+--. +++||+||.+.+++++ +++++.|+.-|+.-|.. .|..|..
T Consensus 87 ~~GVV~G~---lt~dg~iD~~~le~Li~aA~gL~vTFHrAFD~~~d~~~ale~li~~Gv~RILTsGg~-----~sa~eg~ 158 (241)
T COG3142 87 VQGVVLGA---LTADGNIDMPRLEKLIEAAGGLGVTFHRAFDECPDPLEALEQLIELGVERILTSGGK-----ASALEGL 158 (241)
T ss_pred CCcEEEee---ecCCCccCHHHHHHHHHHccCCceeeehhhhhcCCHHHHHHHHHHCCCcEEecCCCc-----CchhhhH
Confidence 55555444 4569999999998875 67899999999977766 7899999
Q ss_pred HHHHHHHHhhCCCcEEEEecC
Q 018253 115 MLIGHTVNCFGASVKVIGNTG 135 (359)
Q Consensus 115 ~li~~~v~~~~grvpViagvg 135 (359)
..++..++.+++|+.|++|.|
T Consensus 159 ~~l~~li~~a~gri~Im~GaG 179 (241)
T COG3142 159 DLLKRLIEQAKGRIIIMAGAG 179 (241)
T ss_pred HHHHHHHHHhcCCEEEEeCCC
Confidence 999999999999999999766
No 74
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=94.11 E-value=1.7 Score=38.27 Aligned_cols=89 Identities=16% Similarity=0.049 Sum_probs=66.8
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecC--CC-CHHHHHHHHHHHHhC
Q 018253 76 FDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTG--SN-STREAIHATEQGFAV 152 (359)
Q Consensus 76 ID~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg--~~-st~~ai~la~~a~~~ 152 (359)
...+...+++++..+.|++++.+....+-..+-+.++-.+.++.+++.+...+|+++-.. .. +.++..++++.+++.
T Consensus 62 ~~~~~~~~~a~~a~~~Gad~i~v~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~pv~iy~~p~~~~~~~~~~~~~~~~~~~ 141 (201)
T cd00945 62 TTTEVKVAEVEEAIDLGADEIDVVINIGSLKEGDWEEVLEEIAAVVEAADGGLPLKVILETRGLKTADEIAKAARIAAEA 141 (201)
T ss_pred CcHHHHHHHHHHHHHcCCCEEEEeccHHHHhCCCHHHHHHHHHHHHHHhcCCceEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 568899999999999999999987665422222367777888788776634689887442 22 577888888888999
Q ss_pred CCCEEEEcCCCC
Q 018253 153 GMHAALHINPYY 164 (359)
Q Consensus 153 Gadav~v~pP~y 164 (359)
|+|++=..++++
T Consensus 142 g~~~iK~~~~~~ 153 (201)
T cd00945 142 GADFIKTSTGFG 153 (201)
T ss_pred CCCEEEeCCCCC
Confidence 999998776654
No 75
>PF00016 RuBisCO_large: Ribulose bisphosphate carboxylase large chain, catalytic domain; InterPro: IPR000685 Ribulose bisphosphate carboxylase (RuBisCO) [, ] catalyses the initial step in Calvin's reductive pentose phosphate cycle in plants as well as purple and green bacteria. It consists of a large catalytic unit and a small subunit of undetermined function. In plants, the large subunit is coded by the chloroplastic genome while the small subunit is encoded in the nuclear genome. Molecular activation of RuBisCO by CO2 involves the formation of a carbamate with the epsilon-amino group of a conserved lysine residue. This carbamate is stabilised by a magnesium ion. One of the ligands of the magnesium ion is an aspartic acid residue close to the active site lysine [].; GO: 0000287 magnesium ion binding, 0016984 ribulose-bisphosphate carboxylase activity, 0015977 carbon fixation, 0009536 plastid; PDB: 3AXM_A 1WDD_A 3AXK_A 1SVD_A 1RXO_B 1UPP_C 1UPM_R 1RCO_L 8RUC_G 1RCX_B ....
Probab=94.09 E-value=0.69 Score=45.13 Aligned_cols=96 Identities=15% Similarity=0.130 Sum_probs=70.0
Q ss_pred eecCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHh----hCCCcEEEEecCCCCHHH
Q 018253 66 IKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNC----FGASVKVIGNTGSNSTRE 141 (359)
Q Consensus 66 l~TPF~~dg~ID~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~----~~grvpViagvg~~st~~ 141 (359)
+-|-+++.--+..+.+.+++..+...|+|=|====.-........+||...+..+++. ++.++-..+++++.+.++
T Consensus 17 ~~tiiKP~~Glsp~~~a~~~y~~a~GG~D~IKDDE~l~~q~f~p~~eRv~~~~~a~~~a~~eTG~~~ly~~NiT~~~~~e 96 (309)
T PF00016_consen 17 LGTIIKPKLGLSPEELAELAYEFALGGVDFIKDDENLANQPFCPFEERVPACMEAVDRAEEETGEKKLYAANITADTPDE 96 (309)
T ss_dssp EEEEESSSSTS-HHHHHHHHHHHHHTTSSEEEE-TT-SSBTTBEHHHHHHHHHHHHHHHHHHHSS--EEEEEE-SSSHHH
T ss_pred EccccCcceeecccchhhHHHhhhhcccceecccccccCcccccHhHhHHhhhhhhhccccccceecceecccccccHHH
Confidence 3444556544899999999999999999854322223456677899999888777764 344445577898878999
Q ss_pred HHHHHHHHHhCCCCEEEEcC
Q 018253 142 AIHATEQGFAVGMHAALHIN 161 (359)
Q Consensus 142 ai~la~~a~~~Gadav~v~p 161 (359)
.+++++.++++|++++|+-+
T Consensus 97 m~~ra~~a~~~G~~~vmv~~ 116 (309)
T PF00016_consen 97 MIERAEYAKEAGANAVMVNV 116 (309)
T ss_dssp HHHHHHHHHHHTGSEEEEEH
T ss_pred HHHhhhhhhhhccchhhccc
Confidence 99999999999999999963
No 76
>PLN02428 lipoic acid synthase
Probab=93.97 E-value=1.3 Score=44.03 Aligned_cols=91 Identities=15% Similarity=0.169 Sum_probs=61.6
Q ss_pred ceEEeeecCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEccCccCc-------CCCCHHHHHHHHHHHHHhhCC---CcEE
Q 018253 61 RLITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEG-------QLMSWDEHIMLIGHTVNCFGA---SVKV 130 (359)
Q Consensus 61 Gi~~al~TPF~~dg~ID~~~l~~li~~li~~Gv~Gl~v~GstGE~-------~~LT~~Er~~li~~~v~~~~g---rvpV 130 (359)
++.....|| |...| ..+++.+.++|++.+-.+--|.+- ...+.+++.++++.+.+..+| +.-+
T Consensus 181 ~i~Ie~L~p---df~~d----~elL~~L~eAG~d~i~hnlETv~rL~~~Ir~~~~sye~~Le~L~~ak~~~pGi~tkSg~ 253 (349)
T PLN02428 181 EILVEALVP---DFRGD----LGAVETVATSGLDVFAHNIETVERLQRIVRDPRAGYKQSLDVLKHAKESKPGLLTKTSI 253 (349)
T ss_pred CcEEEEeCc---cccCC----HHHHHHHHHcCCCEEccCccCcHHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeE
Confidence 455555566 33334 556677778888886655433332 346788888888888776433 3457
Q ss_pred EEecCCCCHHHHHHHHHHHHhCCCCEEEE
Q 018253 131 IGNTGSNSTREAIHATEQGFAVGMHAALH 159 (359)
Q Consensus 131 iagvg~~st~~ai~la~~a~~~Gadav~v 159 (359)
|+|.| .+.+|.++.++...++|+|-+.+
T Consensus 254 MvGLG-ET~Edv~e~l~~Lrelgvd~vti 281 (349)
T PLN02428 254 MLGLG-ETDEEVVQTMEDLRAAGVDVVTF 281 (349)
T ss_pred EEecC-CCHHHHHHHHHHHHHcCCCEEee
Confidence 88885 68888888888888888887655
No 77
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=93.90 E-value=2.2 Score=40.65 Aligned_cols=81 Identities=15% Similarity=0.129 Sum_probs=54.7
Q ss_pred CCCHHHHHHHHHHHHHhhCCCcEEEEecCCCCHHHHHHHHHHHHhCCCCEEEEc--CCCCCC-----CCHHHHHHHHHHH
Q 018253 107 LMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHI--NPYYGK-----TSLEGLISHFDSV 179 (359)
Q Consensus 107 ~LT~~Er~~li~~~v~~~~grvpViagvg~~st~~ai~la~~a~~~Gadav~v~--pP~y~~-----~s~~~l~~yf~~I 179 (359)
....++..+-++...+. ..+.|+++++...+.++..+.++.+++.|+|++-+- .|.... .+.+.+.+..++|
T Consensus 79 ~~g~~~~~~~i~~~~~~-~~~~pvi~si~g~~~~~~~~~a~~~~~~G~d~ielN~~cP~~~~~~~~~~~~~~~~eiv~~v 157 (289)
T cd02810 79 NLGLDVWLQDIAKAKKE-FPGQPLIASVGGSSKEDYVELARKIERAGAKALELNLSCPNVGGGRQLGQDPEAVANLLKAV 157 (289)
T ss_pred CcCHHHHHHHHHHHHhc-cCCCeEEEEeccCCHHHHHHHHHHHHHhCCCEEEEEcCCCCCCCCcccccCHHHHHHHHHHH
Confidence 33455555555444332 136799999999999999999999999999999763 344321 2345666666666
Q ss_pred Hhc--CCeEEE
Q 018253 180 LSM--GPTIIY 188 (359)
Q Consensus 180 a~a--~PiiiY 188 (359)
.+. .||++=
T Consensus 158 r~~~~~pv~vK 168 (289)
T cd02810 158 KAAVDIPLLVK 168 (289)
T ss_pred HHccCCCEEEE
Confidence 665 466654
No 78
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=93.88 E-value=2 Score=40.94 Aligned_cols=116 Identities=12% Similarity=0.034 Sum_probs=88.3
Q ss_pred cCCceEEeeecCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCC
Q 018253 58 KALRLITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSN 137 (359)
Q Consensus 58 ~~~Gi~~al~TPF~~dg~ID~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~ 137 (359)
+-.|+.+. +.+.+.. +.+.+.+.++++.+.+.|++.|.+.=|.| .|++++-.++++.+.+..+..+|+=++. ++
T Consensus 119 k~~G~~v~-~~~~~a~-~~~~~~~~~~~~~~~~~g~~~i~l~DT~G---~~~P~~v~~lv~~l~~~~~~~~~i~~H~-Hn 192 (266)
T cd07944 119 KEKGYEVF-FNLMAIS-GYSDEELLELLELVNEIKPDVFYIVDSFG---SMYPEDIKRIISLLRSNLDKDIKLGFHA-HN 192 (266)
T ss_pred HHCCCeEE-EEEEeec-CCCHHHHHHHHHHHHhCCCCEEEEecCCC---CCCHHHHHHHHHHHHHhcCCCceEEEEe-CC
Confidence 44564322 3333322 37899999999999999999999999999 7999999999999988776557776654 67
Q ss_pred CHHHHHHHHHHHHhCCCCEEEEcCCCCCC----CCHHHHHHHHHHH
Q 018253 138 STREAIHATEQGFAVGMHAALHINPYYGK----TSLEGLISHFDSV 179 (359)
Q Consensus 138 st~~ai~la~~a~~~Gadav~v~pP~y~~----~s~~~l~~yf~~I 179 (359)
+..-++..+..|.++|++.+=..---+.. .+-|+++.+++..
T Consensus 193 ~~Gla~AN~laA~~aGa~~vd~s~~G~G~~aGN~~~E~~v~~l~~~ 238 (266)
T cd07944 193 NLQLALANTLEAIELGVEIIDATVYGMGRGAGNLPTELLLDYLNNK 238 (266)
T ss_pred CccHHHHHHHHHHHcCCCEEEEecccCCCCcCcHHHHHHHHHHHHh
Confidence 89999999999999999988666544432 4456777776543
No 79
>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated
Probab=93.84 E-value=0.38 Score=48.71 Aligned_cols=85 Identities=11% Similarity=0.089 Sum_probs=56.7
Q ss_pred CHHHHHHHHHHHHHCCCCEEEEccCccC---------------------cCCCCHHHH---HHHHHHHHHhhC-CCcEEE
Q 018253 77 DLEAYDDLVNMQIVNGAEGMIVGGTTGE---------------------GQLMSWDEH---IMLIGHTVNCFG-ASVKVI 131 (359)
Q Consensus 77 D~~~l~~li~~li~~Gv~Gl~v~GstGE---------------------~~~LT~~Er---~~li~~~v~~~~-grvpVi 131 (359)
|...+..+++.+.++|++||.+.-|+.. +..=...++ .+.+..+.+.++ +++|||
T Consensus 178 ~~~~~~~~a~~~~~~Gadgi~~~Nt~~~~~~id~~~~~~~p~~~~~~~~gg~SG~a~~p~~l~~v~~~~~~~~~~~ipIi 257 (420)
T PRK08318 178 NITDIREPARAAKRGGADAVSLINTINSITGVDLDRMIPMPIVNGKSSHGGYCGPAVKPIALNMVAEIARDPETRGLPIS 257 (420)
T ss_pred CcccHHHHHHHHHHCCCCEEEEecccCccccccccccCCCceecCCCCcccccchhhhHHHHHHHHHHHhccccCCCCEE
Confidence 3344677888888999999995433332 222234443 344445555443 378998
Q ss_pred EecCCCCHHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 018253 132 GNTGSNSTREAIHATEQGFAVGMHAALHINPYYG 165 (359)
Q Consensus 132 agvg~~st~~ai~la~~a~~~Gadav~v~pP~y~ 165 (359)
+.=|=.+.++++++.+ +|||+|++..-.++
T Consensus 258 g~GGI~s~~da~e~i~----aGA~~Vqi~ta~~~ 287 (420)
T PRK08318 258 GIGGIETWRDAAEFIL----LGAGTVQVCTAAMQ 287 (420)
T ss_pred eecCcCCHHHHHHHHH----hCCChheeeeeecc
Confidence 7555567888988874 99999999988665
No 80
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=93.83 E-value=1.7 Score=41.86 Aligned_cols=100 Identities=14% Similarity=0.157 Sum_probs=80.6
Q ss_pred CCCCCHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCCCHHHHHHHHHHHHhC
Q 018253 73 DGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAV 152 (359)
Q Consensus 73 dg~ID~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~st~~ai~la~~a~~~ 152 (359)
+++.|.+-+.++++.+.+.|++.|.+.-|+|= +++.+-.++++.+.+.++ .+|+-++. +++.--++..+-.|.++
T Consensus 149 ~~~~~~~~~~~~~~~~~~~G~d~i~l~DT~G~---~~P~~v~~lv~~l~~~~~-~~~i~~H~-Hn~~Gla~AN~laA~~a 223 (287)
T PRK05692 149 EGEVPPEAVADVAERLFALGCYEISLGDTIGV---GTPGQVRAVLEAVLAEFP-AERLAGHF-HDTYGQALANIYASLEE 223 (287)
T ss_pred CCCCCHHHHHHHHHHHHHcCCcEEEeccccCc---cCHHHHHHHHHHHHHhCC-CCeEEEEe-cCCCCcHHHHHHHHHHh
Confidence 56899999999999999999999999999995 689999999999888764 46776655 57888899999999999
Q ss_pred CCCEEEEcCCC----------CCCCCHHHHHHHHH
Q 018253 153 GMHAALHINPY----------YGKTSLEGLISHFD 177 (359)
Q Consensus 153 Gadav~v~pP~----------y~~~s~~~l~~yf~ 177 (359)
|++.+=..--- .....-|+++.+++
T Consensus 224 G~~~id~s~~GlGecpfa~g~aGN~~~E~lv~~L~ 258 (287)
T PRK05692 224 GITVFDASVGGLGGCPYAPGASGNVATEDVLYMLH 258 (287)
T ss_pred CCCEEEEEccccCCCCCCCCccccccHHHHHHHHH
Confidence 99988555432 22345577777765
No 81
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=93.79 E-value=0.79 Score=44.03 Aligned_cols=98 Identities=10% Similarity=-0.037 Sum_probs=62.9
Q ss_pred HHHHHHHCCCCEEEEccCccCcCC-----CCHHHHHHHHHHHHHhhCC-CcEEEEecC------CCCHHHHHHHHHHHHh
Q 018253 84 LVNMQIVNGAEGMIVGGTTGEGQL-----MSWDEHIMLIGHTVNCFGA-SVKVIGNTG------SNSTREAIHATEQGFA 151 (359)
Q Consensus 84 li~~li~~Gv~Gl~v~GstGE~~~-----LT~~Er~~li~~~v~~~~g-rvpViagvg------~~st~~ai~la~~a~~ 151 (359)
-++..++.|++.+-+..+++|.+. .|.+|-.+.+..+++.+.. ...|.+++. ..+.+..+++++.+.+
T Consensus 79 ~~~~A~~~g~~~i~i~~~~S~~h~~~~~~~t~~e~l~~~~~~i~~a~~~G~~v~~~~~d~~~~~r~~~~~~~~~~~~~~~ 158 (280)
T cd07945 79 SVDWIKSAGAKVLNLLTKGSLKHCTEQLRKTPEEHFADIREVIEYAIKNGIEVNIYLEDWSNGMRDSPDYVFQLVDFLSD 158 (280)
T ss_pred HHHHHHHCCCCEEEEEEeCCHHHHHHHHCcCHHHHHHHHHHHHHHHHhCCCEEEEEEEeCCCCCcCCHHHHHHHHHHHHH
Confidence 466677778888888887777655 5667776666666665432 244555544 2357777777777777
Q ss_pred CCCCEEEEcCCCCCCCCHHHHHHHHHHHHhc
Q 018253 152 VGMHAALHINPYYGKTSLEGLISHFDSVLSM 182 (359)
Q Consensus 152 ~Gadav~v~pP~y~~~s~~~l~~yf~~Ia~a 182 (359)
+|+|.+.+. =.....++.++.++++.+.+.
T Consensus 159 ~G~~~i~l~-DT~G~~~P~~v~~l~~~l~~~ 188 (280)
T cd07945 159 LPIKRIMLP-DTLGILSPFETYTYISDMVKR 188 (280)
T ss_pred cCCCEEEec-CCCCCCCHHHHHHHHHHHHhh
Confidence 777765544 233445667777777777654
No 82
>cd08212 RuBisCO_large_I Ribulose bisphosphate carboxylase large chain, Form I. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV , which differ in their taxonomic distribution and subunit composition. Form I is the most abundant class, present in plants, algae, and bacteria, and forms large complexes composed of 8 large and 8 small subunits.
Probab=93.75 E-value=2.4 Score=43.50 Aligned_cols=96 Identities=16% Similarity=0.200 Sum_probs=72.5
Q ss_pred eeecCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhC---CCcE-EEEecCCCCHH
Q 018253 65 AIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFG---ASVK-VIGNTGSNSTR 140 (359)
Q Consensus 65 al~TPF~~dg~ID~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~---grvp-Viagvg~~st~ 140 (359)
-+-|-+++.--+.-+.+.+++..+...|+|=|====.-+.......+||...+-.+++.+. |+.+ ..+++++.+++
T Consensus 147 L~~tiiKP~iGlsp~~~A~~~~~~~~GGvD~IKDDE~l~~~~~~p~~~Rv~~~~~a~~~a~~eTG~~~~y~~NiTa~~~~ 226 (450)
T cd08212 147 LLGCTIKPKLGLSAKNYGRVVYECLRGGLDFTKDDENINSQPFMRWRDRFLFVAEAVNKAQAETGEVKGHYLNVTAGTME 226 (450)
T ss_pred eEEEeccCccCCCHHHHHHHHHHHHccCCcccccCccCCCCCCCCHHHHHHHHHHHHHHHHHhhCCcceeeccccCCCHH
Confidence 3455556654589999999999999999883321113455667789999988877777542 3434 45589888999
Q ss_pred HHHHHHHHHHhCCCCEEEEc
Q 018253 141 EAIHATEQGFAVGMHAALHI 160 (359)
Q Consensus 141 ~ai~la~~a~~~Gadav~v~ 160 (359)
+.++.++.+.+.|++++|+-
T Consensus 227 em~~ra~~a~~~G~~~~mv~ 246 (450)
T cd08212 227 EMYKRAEFAKELGSPIIMHD 246 (450)
T ss_pred HHHHHHHHHHHhCCCeEeee
Confidence 99999999999999999987
No 83
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=93.67 E-value=2.1 Score=42.01 Aligned_cols=128 Identities=8% Similarity=0.044 Sum_probs=77.6
Q ss_pred CCCHHHHHHHHH-------HHHHCCCCEEEEccCccC----c-----------CCCCHHHHHHHH----HHHHHhhCCCc
Q 018253 75 RFDLEAYDDLVN-------MQIVNGAEGMIVGGTTGE----G-----------QLMSWDEHIMLI----GHTVNCFGASV 128 (359)
Q Consensus 75 ~ID~~~l~~li~-------~li~~Gv~Gl~v~GstGE----~-----------~~LT~~Er~~li----~~~v~~~~grv 128 (359)
.++.+.++++++ +..++|.|||=+.+..|- | +--|.+.|.+++ +.+.+.++.+.
T Consensus 143 ~mt~~eI~~ii~~~~~aA~~a~~aGfDgVei~~~~gyLl~qFlsp~~N~R~D~yGgsl~nr~rf~~eiv~aIR~~vG~d~ 222 (336)
T cd02932 143 ELTREEIAEVVDAFVAAARRAVEAGFDVIEIHAAHGYLLHQFLSPLSNKRTDEYGGSLENRMRFLLEVVDAVRAVWPEDK 222 (336)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEccccccHHHHhcCCccCCCCcccCCCHHHHhHHHHHHHHHHHHHcCCCc
Confidence 355666655554 455799999988875442 1 122455665544 44444555566
Q ss_pred EEEEecC-------CCCHHHHHHHHHHHHhCCCCEEEEcCCCCCC-----CCHHHHHHHHHHHHhc--CCeEEEeCCCCC
Q 018253 129 KVIGNTG-------SNSTREAIHATEQGFAVGMHAALHINPYYGK-----TSLEGLISHFDSVLSM--GPTIIYNVPSRT 194 (359)
Q Consensus 129 pViagvg-------~~st~~ai~la~~a~~~Gadav~v~pP~y~~-----~s~~~l~~yf~~Ia~a--~PiiiYn~P~~t 194 (359)
||.+=++ +.+.++++++++..++.|+|.+-+....+.. ........+.+.|.+. .||+. .
T Consensus 223 ~v~vri~~~~~~~~g~~~~e~~~ia~~Le~~gvd~iev~~g~~~~~~~~~~~~~~~~~~~~~ir~~~~iPVi~------~ 296 (336)
T cd02932 223 PLFVRISATDWVEGGWDLEDSVELAKALKELGVDLIDVSSGGNSPAQKIPVGPGYQVPFAERIRQEAGIPVIA------V 296 (336)
T ss_pred eEEEEEcccccCCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCcccccCCCccccHHHHHHHHhhCCCCEEE------e
Confidence 7765332 4568999999999999999999876432211 0111123555666655 57654 2
Q ss_pred CCCCCHHHHHHHhc
Q 018253 195 GQDIPPRVIHTMAQ 208 (359)
Q Consensus 195 g~~ls~e~l~~La~ 208 (359)
|.-.+++..+++.+
T Consensus 297 G~i~t~~~a~~~l~ 310 (336)
T cd02932 297 GLITDPEQAEAILE 310 (336)
T ss_pred CCCCCHHHHHHHHH
Confidence 44457887777763
No 84
>PRK12858 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=93.67 E-value=2.6 Score=41.77 Aligned_cols=115 Identities=10% Similarity=0.078 Sum_probs=68.6
Q ss_pred CHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCCC--------HHH--HHHHH
Q 018253 77 DLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNS--------TRE--AIHAT 146 (359)
Q Consensus 77 D~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~s--------t~~--ai~la 146 (359)
.++.+++++...+..+++||++-..-|--.. .. ...+..+|+++.... ..+ ..--.
T Consensus 47 ~l~~~K~lv~~~l~~~asaILld~~yG~~a~-------------~~-~~~~~GLil~~e~tg~d~t~~gr~~~~~~~~sv 112 (340)
T PRK12858 47 DLVDFKLAVSEALTPYASAILLDPEYGLPAA-------------KV-RDPNCGLLLSYEKTGYDATAPGRLPDLLDNWSV 112 (340)
T ss_pred hHHHHHHHHHHHHhhCCCEEEEccccChhhh-------------cc-cCCCCCeEEEecccccccCCCCCCccccccccH
Confidence 3677889999999999999998754443211 11 113456777763111 111 11226
Q ss_pred HHHHhCCCCEEEEcCCCCCCCC-----HHHHHHHHHHHHhc-----CCeEE----EeCCCCCCCC-----CCHHHHHHHh
Q 018253 147 EQGFAVGMHAALHINPYYGKTS-----LEGLISHFDSVLSM-----GPTII----YNVPSRTGQD-----IPPRVIHTMA 207 (359)
Q Consensus 147 ~~a~~~Gadav~v~pP~y~~~s-----~~~l~~yf~~Ia~a-----~Piii----Yn~P~~tg~~-----ls~e~l~~La 207 (359)
+++.++|||+|-+.- |+.++ .++..++.++|.+. +|+++ |..+...... ..|+.+...+
T Consensus 113 e~a~~~GAdAVk~lv--~~~~d~~~~~~~~~~~~l~rv~~ec~~~giPlllE~l~y~~~~~~~~~~~~a~~~p~~V~~a~ 190 (340)
T PRK12858 113 RRIKEAGADAVKLLL--YYRPDEDDAINDRKHAFVERVGAECRANDIPFFLEPLTYDGKGSDKKAEEFAKVKPEKVIKTM 190 (340)
T ss_pred HHHHHcCCCEEEEEE--EeCCCcchHHHHHHHHHHHHHHHHHHHcCCceEEEEeccCCCccccccccccccCHHHHHHHH
Confidence 889999999998873 33333 35677888888764 69766 5432211112 4566666544
No 85
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=93.63 E-value=5.6 Score=36.36 Aligned_cols=183 Identities=12% Similarity=0.036 Sum_probs=98.1
Q ss_pred CCceEEeeecCCCCCCCCC-HHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEE----e
Q 018253 59 ALRLITAIKTPYLPDGRFD-LEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIG----N 133 (359)
Q Consensus 59 ~~Gi~~al~TPF~~dg~ID-~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpVia----g 133 (359)
.+|++...-|- +.|-++ .....++.+.+.+.|+.++-+ ++ . +.++.+.+. ..+|++. +
T Consensus 8 ~~~~~~~~~~~--~~~~~~~~~~i~~~a~~~~~~G~~~~~~-~~--------~----~~~~~i~~~--~~iPil~~~~~~ 70 (219)
T cd04729 8 KGGLIVSCQAL--PGEPLHSPEIMAAMALAAVQGGAVGIRA-NG--------V----EDIRAIRAR--VDLPIIGLIKRD 70 (219)
T ss_pred cCCeEEEccCC--CCCCcCcHHHHHHHHHHHHHCCCeEEEc-CC--------H----HHHHHHHHh--CCCCEEEEEecC
Confidence 56777776665 455554 457899999999999998653 11 1 233333332 3578763 2
Q ss_pred cCC--CCHHHHHHHHHHHHhCCCCEEEEcCCCCCCCCHHHHHHHHHHHHhc--CCeEEEeCCCCCCCCCCHHHHHHHhcC
Q 018253 134 TGS--NSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSM--GPTIIYNVPSRTGQDIPPRVIHTMAQS 209 (359)
Q Consensus 134 vg~--~st~~ai~la~~a~~~Gadav~v~pP~y~~~s~~~l~~yf~~Ia~a--~PiiiYn~P~~tg~~ls~e~l~~La~~ 209 (359)
.-. .-.....+.++.+.++|||.+++..+....+..+.+.++++.+.+. .|++. . ..+++...++.+.
T Consensus 71 ~~~~~~~ig~~~~~~~~a~~aGad~I~~~~~~~~~p~~~~~~~~i~~~~~~g~~~iiv-~-------v~t~~ea~~a~~~ 142 (219)
T cd04729 71 YPDSEVYITPTIEEVDALAAAGADIIALDATDRPRPDGETLAELIKRIHEEYNCLLMA-D-------ISTLEEALNAAKL 142 (219)
T ss_pred CCCCCceeCCCHHHHHHHHHcCCCEEEEeCCCCCCCCCcCHHHHHHHHHHHhCCeEEE-E-------CCCHHHHHHHHHc
Confidence 210 0011235688999999999888876544333323455555555543 45554 2 1355555555542
Q ss_pred -CCeEEEec---------cC-chh----hHhhhhCCceEEEecC-CchhhhhhhhcCCceeecccccccHHHH
Q 018253 210 -PNLAGVKE---------CV-GND----RVEHYTGNGIVVWSGN-DDQCHDARWNHGATGVISVTSNLVPGMM 266 (359)
Q Consensus 210 -pnivGiK~---------ss-~d~----~l~~~~~~~~~v~~G~-d~~~~~~~l~~Ga~G~is~~an~~P~l~ 266 (359)
..++++.. .. .+. ++++..+-.+-.-.|- +..-+..++..|++|++.+.+-+-++..
T Consensus 143 G~d~i~~~~~g~t~~~~~~~~~~~~~l~~i~~~~~ipvia~GGI~~~~~~~~~l~~GadgV~vGsal~~~~~~ 215 (219)
T cd04729 143 GFDIIGTTLSGYTEETAKTEDPDFELLKELRKALGIPVIAEGRINSPEQAAKALELGADAVVVGSAITRPEHI 215 (219)
T ss_pred CCCEEEccCccccccccCCCCCCHHHHHHHHHhcCCCEEEeCCCCCHHHHHHHHHCCCCEEEEchHHhChHhH
Confidence 23333221 00 111 1222222223333344 2223344578899999988775555443
No 86
>TIGR01949 AroFGH_arch predicted phospho-2-dehydro-3-deoxyheptonate aldolase. Together these two genes appear to perform the synthesis of 3-dehydroquinate. It is presumed that the substrates and the chemical transformations involved are identical, but this has not yet been proven experimentally.
Probab=93.58 E-value=1 Score=42.46 Aligned_cols=94 Identities=15% Similarity=0.100 Sum_probs=66.3
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEE--ecCCCCHHHHHHHHHHHHhCC
Q 018253 76 FDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIG--NTGSNSTREAIHATEQGFAVG 153 (359)
Q Consensus 76 ID~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpVia--gvg~~st~~ai~la~~a~~~G 153 (359)
.|.+.+.+.++...+.|+|-|.+... .. .+.++.+++.. ++||++ |+...+.+++.+.++.+.++|
T Consensus 153 ~~~~~~~~~~~~a~~~GADyikt~~~------~~----~~~l~~~~~~~--~iPVva~GGi~~~~~~~~~~~i~~~~~aG 220 (258)
T TIGR01949 153 RDPELVAHAARLGAELGADIVKTPYT------GD----IDSFRDVVKGC--PAPVVVAGGPKTNSDREFLQMIKDAMEAG 220 (258)
T ss_pred ccHHHHHHHHHHHHHHCCCEEeccCC------CC----HHHHHHHHHhC--CCcEEEecCCCCCCHHHHHHHHHHHHHcC
Confidence 45566666666667789988775311 11 34444544433 577755 555557899999999999999
Q ss_pred CCEEEEcCCCCCCCCHHHHHHHHHHHHh
Q 018253 154 MHAALHINPYYGKTSLEGLISHFDSVLS 181 (359)
Q Consensus 154 adav~v~pP~y~~~s~~~l~~yf~~Ia~ 181 (359)
|+++.+..-.|...++.+..+-++.+..
T Consensus 221 a~Gia~g~~i~~~~dp~~~~~~l~~~i~ 248 (258)
T TIGR01949 221 AAGVAVGRNIFQHDDPVGITKAVCKIVH 248 (258)
T ss_pred CcEEehhhHhhcCCCHHHHHHHHHHHHh
Confidence 9999999888887888777777777654
No 87
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=93.57 E-value=0.79 Score=43.14 Aligned_cols=89 Identities=18% Similarity=0.187 Sum_probs=63.4
Q ss_pred HHHHHHCCCCEEEEcc-CccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCCCHHHHHHHHHHHHhCCCCEEEEcCCC
Q 018253 85 VNMQIVNGAEGMIVGG-TTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPY 163 (359)
Q Consensus 85 i~~li~~Gv~Gl~v~G-stGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~st~~ai~la~~a~~~Gadav~v~pP~ 163 (359)
.+.+.+.|++.+.++| ..|.+..++..|..+ .+++. .++|||++-|=.+.+++. .|.++|+|++++-.-.
T Consensus 137 ar~l~~~G~~~vmPlg~pIGsg~Gi~~~~~I~---~I~e~--~~vpVI~egGI~tpeda~----~AmelGAdgVlV~SAI 207 (248)
T cd04728 137 AKRLEDAGCAAVMPLGSPIGSGQGLLNPYNLR---IIIER--ADVPVIVDAGIGTPSDAA----QAMELGADAVLLNTAI 207 (248)
T ss_pred HHHHHHcCCCEeCCCCcCCCCCCCCCCHHHHH---HHHHh--CCCcEEEeCCCCCHHHHH----HHHHcCCCEEEEChHh
Confidence 4556667999987755 345556676655444 55554 369999987766666654 5566999999999888
Q ss_pred CCCCCHHHHHHHHHHHHhc
Q 018253 164 YGKTSLEGLISHFDSVLSM 182 (359)
Q Consensus 164 y~~~s~~~l~~yf~~Ia~a 182 (359)
....++..+.+.|..-.++
T Consensus 208 t~a~dP~~ma~af~~Av~a 226 (248)
T cd04728 208 AKAKDPVAMARAFKLAVEA 226 (248)
T ss_pred cCCCCHHHHHHHHHHHHHH
Confidence 7667788888888877654
No 88
>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.
Probab=93.57 E-value=1.6 Score=42.98 Aligned_cols=127 Identities=14% Similarity=0.143 Sum_probs=77.0
Q ss_pred CCHHHHHHHHH-------HHHHCCCCEEEEccCcc----CcCC-----C------CHHHHHHHHHHHHHhhCCCc---EE
Q 018253 76 FDLEAYDDLVN-------MQIVNGAEGMIVGGTTG----EGQL-----M------SWDEHIMLIGHTVNCFGASV---KV 130 (359)
Q Consensus 76 ID~~~l~~li~-------~li~~Gv~Gl~v~GstG----E~~~-----L------T~~Er~~li~~~v~~~~grv---pV 130 (359)
++.+.++++++ +..++|.|||-+.+..| +|.+ - |.+.|.+++..+++.+...+ +|
T Consensus 142 mt~~eI~~ii~~f~~aA~~a~~aGfDgVeih~ahGyLl~qFlSp~~N~R~D~yGGslenR~rf~~eii~air~~vg~d~v 221 (338)
T cd02933 142 LTTEEIPGIVADFRQAARNAIEAGFDGVEIHGANGYLIDQFLRDGSNKRTDEYGGSIENRARFLLEVVDAVAEAIGADRV 221 (338)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHcCCCEEEEccccchhHHHhcCCccCCCCCcCCCcHHHhhhHHHHHHHHHHHHhCCCce
Confidence 45555555554 45569999999987664 1111 1 34667776666666543222 45
Q ss_pred EEecC----------CCCHHHHHHHHHHHHhCCCCEEEEcCCCCCCCCHHHHHHHHHHHHhc--CCeEEEeCCCCCCCCC
Q 018253 131 IGNTG----------SNSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSM--GPTIIYNVPSRTGQDI 198 (359)
Q Consensus 131 iagvg----------~~st~~ai~la~~a~~~Gadav~v~pP~y~~~s~~~l~~yf~~Ia~a--~PiiiYn~P~~tg~~l 198 (359)
.+=++ +.+.++++++++..++.|+|.+-+....+......-...+.+.|.+. .||+.-. + +
T Consensus 222 ~vRis~~~~~~~~~~~~~~ee~~~~~~~l~~~g~d~i~vs~g~~~~~~~~~~~~~~~~ik~~~~ipvi~~G-----~--i 294 (338)
T cd02933 222 GIRLSPFGTFNDMGDSDPEATFSYLAKELNKRGLAYLHLVEPRVAGNPEDQPPDFLDFLRKAFKGPLIAAG-----G--Y 294 (338)
T ss_pred EEEECccccCCCCCCCCCHHHHHHHHHHHHHcCCcEEEEecCCCCCcccccchHHHHHHHHHcCCCEEEEC-----C--C
Confidence 44232 34789999999999999999998866654332222233344444443 5877642 2 3
Q ss_pred CHHHHHHHhcC
Q 018253 199 PPRVIHTMAQS 209 (359)
Q Consensus 199 s~e~l~~La~~ 209 (359)
+++..+++.+.
T Consensus 295 ~~~~a~~~l~~ 305 (338)
T cd02933 295 DAESAEAALAD 305 (338)
T ss_pred CHHHHHHHHHc
Confidence 38888887643
No 89
>cd02922 FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding domain. FCB2 (AKA L-lactate:cytochrome c oxidoreductase) is a respiratory enzyme located in the intermembrane space of fungal mitochondria which catalyzes the oxidation of L-lactate to pyruvate. FCB2 also participates in a short electron-transport chain involving cytochrome c and cytochrome oxidase which ultimately directs the reducing equivalents gained from L-lactate oxidation to oxygen, yielding one molecule of ATP for every L-lactate molecule consumed. FCB2 is composed of 2 domains: a C-terminal flavin-binding domain, which includes the active site for lacate oxidation, and an N-terminal b2-cytochrome domain, required for efficient cytochrome c reduction. FCB2 is a homotetramer and contains two noncovalently bound cofactors, FMN and heme per subunit.
Probab=93.49 E-value=0.7 Score=45.79 Aligned_cols=96 Identities=10% Similarity=0.095 Sum_probs=62.8
Q ss_pred HHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHH---hhCCCcEEEEecCCCCHHHHHHHHHHHHhCCCCEEE
Q 018253 82 DDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVN---CFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAAL 158 (359)
Q Consensus 82 ~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~---~~~grvpViagvg~~st~~ai~la~~a~~~Gadav~ 158 (359)
...+..+.+.|+++|.+.++-|-...-+..-- ..+..+.+ .+++++|||+.=|=.+-.++++ |..+|||++.
T Consensus 224 ~~dA~~a~~~G~d~I~vsnhgG~~~d~~~~~~-~~L~~i~~~~~~~~~~~~vi~~GGIr~G~Dv~k----alaLGA~aV~ 298 (344)
T cd02922 224 VEDAVLAAEYGVDGIVLSNHGGRQLDTAPAPI-EVLLEIRKHCPEVFDKIEVYVDGGVRRGTDVLK----ALCLGAKAVG 298 (344)
T ss_pred HHHHHHHHHcCCCEEEEECCCcccCCCCCCHH-HHHHHHHHHHHHhCCCceEEEeCCCCCHHHHHH----HHHcCCCEEE
Confidence 34455778899999999887766532111111 12222233 3456899987444334445443 4558999999
Q ss_pred EcCCCCCCC---CHHHHHHHHHHHHhc
Q 018253 159 HINPYYGKT---SLEGLISHFDSVLSM 182 (359)
Q Consensus 159 v~pP~y~~~---s~~~l~~yf~~Ia~a 182 (359)
+-.|+.+.+ .++++..+++.+.+.
T Consensus 299 iG~~~l~~l~~~G~~gv~~~l~~l~~E 325 (344)
T cd02922 299 LGRPFLYALSAYGEEGVEKAIQILKDE 325 (344)
T ss_pred ECHHHHHHHhhccHHHHHHHHHHHHHH
Confidence 999987643 678999999988765
No 90
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=93.46 E-value=0.85 Score=42.20 Aligned_cols=81 Identities=12% Similarity=0.015 Sum_probs=57.2
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhC-CCcEEEEecCC--------CCHHHHHHH
Q 018253 75 RFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFG-ASVKVIGNTGS--------NSTREAIHA 145 (359)
Q Consensus 75 ~ID~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~-grvpViagvg~--------~st~~ai~l 145 (359)
.-+.+.....++..++.|++++.+--..|. ++.+|..+.++.+++.+. ..+|+|+-+.. .+. +.++.
T Consensus 72 ~~~~~~~~~~v~~a~~~Ga~~v~~~~~~~~---~~~~~~~~~i~~v~~~~~~~g~~~iie~~~~g~~~~~~~~~-~~i~~ 147 (235)
T cd00958 72 DDNDKVLVASVEDAVRLGADAVGVTVYVGS---EEEREMLEELARVAAEAHKYGLPLIAWMYPRGPAVKNEKDP-DLIAY 147 (235)
T ss_pred CCCchhhhcCHHHHHHCCCCEEEEEEecCC---chHHHHHHHHHHHHHHHHHcCCCEEEEEeccCCcccCccCH-HHHHH
Confidence 455677777788999999999866555553 346777777777776543 46899886532 223 55555
Q ss_pred -HHHHHhCCCCEEEE
Q 018253 146 -TEQGFAVGMHAALH 159 (359)
Q Consensus 146 -a~~a~~~Gadav~v 159 (359)
++.|.++|||.+-+
T Consensus 148 ~~~~a~~~GaD~Ik~ 162 (235)
T cd00958 148 AARIGAELGADIVKT 162 (235)
T ss_pred HHHHHHHHCCCEEEe
Confidence 89999999998887
No 91
>PRK09549 mtnW 2,3-diketo-5-methylthiopentyl-1-phosphate enolase; Reviewed
Probab=93.46 E-value=3.5 Score=41.80 Aligned_cols=98 Identities=15% Similarity=0.077 Sum_probs=73.9
Q ss_pred eecCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhh----CCCcEEEEecCCCCHHH
Q 018253 66 IKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCF----GASVKVIGNTGSNSTRE 141 (359)
Q Consensus 66 l~TPF~~dg~ID~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~----~grvpViagvg~~st~~ 141 (359)
+-|-+++.--+.-+.+.+++..+...|+|=+====.-........+||...+-.+++.+ +.++-..+++++ ++.+
T Consensus 137 ~~tiiKP~~GLsp~~~a~~~y~~~~GGvD~IKDDE~l~~q~~~p~~eRv~~~~~a~~~a~~eTG~~~~y~~NiT~-~~~e 215 (407)
T PRK09549 137 LMSIFKGVIGRDLDYLKEQLRDQALGGVDLVKDDEILFENALTPFEKRIVAGKEVLQEVYETTGHKTLYAVNLTG-RTFE 215 (407)
T ss_pred EEEeecCccCCCHHHHHHHHHHHHhcCCcceecCcCCCCCCCcCHHHHHHHHHHHHHHHHHhhCCcceEEEecCC-CHHH
Confidence 34556656559999999999999999998432222445677788999988877777654 344445668876 5789
Q ss_pred HHHHHHHHHhCCCCEEEEcCCCC
Q 018253 142 AIHATEQGFAVGMHAALHINPYY 164 (359)
Q Consensus 142 ai~la~~a~~~Gadav~v~pP~y 164 (359)
.+++++.++++|+.++|+.+-.+
T Consensus 216 m~~ra~~a~~~G~~~~m~~~~~~ 238 (407)
T PRK09549 216 LKEKAKRAAEAGADALLFNVFAY 238 (407)
T ss_pred HHHHHHHHHHcCCCeEEEecccc
Confidence 99999999999999999986444
No 92
>PLN02535 glycolate oxidase
Probab=93.44 E-value=0.77 Score=45.82 Aligned_cols=93 Identities=18% Similarity=0.223 Sum_probs=64.1
Q ss_pred HHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCCCHHHHHHHHHHHHhCCCCEEEEcCCCC
Q 018253 85 VNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYY 164 (359)
Q Consensus 85 i~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~st~~ai~la~~a~~~Gadav~v~pP~y 164 (359)
+..+++.|+++|.+.|+-|-..-.+..- ...+..+.+.+++++|||+-=|=.+-.+.+ .|-.+|||+|++-.|+.
T Consensus 237 A~~a~~~GvD~I~vsn~GGr~~d~~~~t-~~~L~ev~~av~~~ipVi~dGGIr~g~Dv~----KALalGA~aV~vGr~~l 311 (364)
T PLN02535 237 AIKAVEVGVAGIIVSNHGARQLDYSPAT-ISVLEEVVQAVGGRVPVLLDGGVRRGTDVF----KALALGAQAVLVGRPVI 311 (364)
T ss_pred HHHHHhcCCCEEEEeCCCcCCCCCChHH-HHHHHHHHHHHhcCCCEEeeCCCCCHHHHH----HHHHcCCCEEEECHHHH
Confidence 4467789999999998887554444433 344445566666789999743333344443 45668999999999987
Q ss_pred CC---CCHHHHHHHHHHHHhc
Q 018253 165 GK---TSLEGLISHFDSVLSM 182 (359)
Q Consensus 165 ~~---~s~~~l~~yf~~Ia~a 182 (359)
+. ..++++.+.++.+.+.
T Consensus 312 ~~l~~~g~~gv~~~l~~l~~e 332 (364)
T PLN02535 312 YGLAAKGEDGVRKVIEMLKDE 332 (364)
T ss_pred hhhhhccHHHHHHHHHHHHHH
Confidence 64 3578888888777654
No 93
>PRK00311 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed
Probab=93.42 E-value=0.46 Score=45.36 Aligned_cols=117 Identities=18% Similarity=0.171 Sum_probs=69.6
Q ss_pred cCCCCCCCCCHHH-HHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCC----------
Q 018253 68 TPYLPDGRFDLEA-YDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGS---------- 136 (359)
Q Consensus 68 TPF~~dg~ID~~~-l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~---------- 136 (359)
+||. ..+.+.+. +++-++.+.+.|++|+-+=|. +|..+.++.+++ .++||+.++|=
T Consensus 83 ~pfg-~y~~~~~~av~~a~r~~~~aGa~aVkiEdg---------~~~~~~I~al~~---agIpV~gHiGL~pq~~~~~gg 149 (264)
T PRK00311 83 MPFG-SYQASPEQALRNAGRLMKEAGAHAVKLEGG---------EEVAETIKRLVE---RGIPVMGHLGLTPQSVNVLGG 149 (264)
T ss_pred CCCC-CccCCHHHHHHHHHHHHHHhCCeEEEEcCc---------HHHHHHHHHHHH---CCCCEeeeecccceeecccCC
Confidence 4774 33356665 444454444499999999774 356666666654 47888754431
Q ss_pred --------CCHHHHHHHHHHHHhCCCCEEEEcCCCCCCCCHHHHHHHHHHHHhc--CCeEEE-eCCCCCCCCCCHHHHHH
Q 018253 137 --------NSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSM--GPTIIY-NVPSRTGQDIPPRVIHT 205 (359)
Q Consensus 137 --------~st~~ai~la~~a~~~Gadav~v~pP~y~~~s~~~l~~yf~~Ia~a--~PiiiY-n~P~~tg~~ls~e~l~~ 205 (359)
.+.+++++.++..+++|||++++--+ ++ + + .+.|.++ .|+|=. -=|...|+-|=...+.-
T Consensus 150 ~~i~grt~~~a~~~i~ra~a~~eAGA~~i~lE~v----~~-~-~---~~~i~~~l~iP~igiGaG~~~dgqvlv~~D~lG 220 (264)
T PRK00311 150 YKVQGRDEEAAEKLLEDAKALEEAGAFALVLECV----PA-E-L---AKEITEALSIPTIGIGAGPDCDGQVLVWHDMLG 220 (264)
T ss_pred eeeecCCHHHHHHHHHHHHHHHHCCCCEEEEcCC----CH-H-H---HHHHHHhCCCCEEEeccCCCCCceeeeHHhhcC
Confidence 22558899999999999999888543 22 2 2 2344444 465532 22445555544444443
Q ss_pred H
Q 018253 206 M 206 (359)
Q Consensus 206 L 206 (359)
+
T Consensus 221 ~ 221 (264)
T PRK00311 221 L 221 (264)
T ss_pred C
Confidence 3
No 94
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=93.39 E-value=1.9 Score=40.75 Aligned_cols=100 Identities=16% Similarity=0.085 Sum_probs=81.2
Q ss_pred CCCCHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCCCHHHHHHHHHHHHhCC
Q 018253 74 GRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVG 153 (359)
Q Consensus 74 g~ID~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~st~~ai~la~~a~~~G 153 (359)
++.+.+.+.++++.+.+.|++.|.+.=|+| .+++++-.++++.+.+..+. +|+=++. +++..-++..+..|.++|
T Consensus 136 ~~~~~~~~~~~~~~~~~~G~d~i~l~DT~G---~~~P~~v~~lv~~l~~~~~~-~~l~~H~-Hn~~GlA~AN~laAi~aG 210 (263)
T cd07943 136 HMASPEELAEQAKLMESYGADCVYVTDSAG---AMLPDDVRERVRALREALDP-TPVGFHG-HNNLGLAVANSLAAVEAG 210 (263)
T ss_pred cCCCHHHHHHHHHHHHHcCCCEEEEcCCCC---CcCHHHHHHHHHHHHHhCCC-ceEEEEe-cCCcchHHHHHHHHHHhC
Confidence 568899999999999999999999999999 89999999999999887753 5665544 678888999999999999
Q ss_pred CCEEEEcCCCCC----CCCHHHHHHHHHH
Q 018253 154 MHAALHINPYYG----KTSLEGLISHFDS 178 (359)
Q Consensus 154 adav~v~pP~y~----~~s~~~l~~yf~~ 178 (359)
++.+=..---+. .++-|+++.+++.
T Consensus 211 a~~vd~s~~GlG~~aGN~~~E~lv~~L~~ 239 (263)
T cd07943 211 ATRIDGSLAGLGAGAGNTPLEVLVAVLER 239 (263)
T ss_pred CCEEEeecccccCCcCCccHHHHHHHHHh
Confidence 998866544443 3556777777753
No 95
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=93.39 E-value=2.7 Score=41.24 Aligned_cols=86 Identities=14% Similarity=0.127 Sum_probs=58.9
Q ss_pred CCCHHHHHHHH-------HHHHHCCCCEEEEccCc----------------cCcCCCCHHHHHHHHHHHH----HhhCCC
Q 018253 75 RFDLEAYDDLV-------NMQIVNGAEGMIVGGTT----------------GEGQLMSWDEHIMLIGHTV----NCFGAS 127 (359)
Q Consensus 75 ~ID~~~l~~li-------~~li~~Gv~Gl~v~Gst----------------GE~~~LT~~Er~~li~~~v----~~~~gr 127 (359)
.++.+.+++++ ++..++|.|||=+.+.. .|+-- |.+.|.+++..++ +.++.+
T Consensus 138 ~mt~~eI~~~i~~~~~aA~ra~~aGfDgVeih~a~gyLl~qFlsp~~N~R~D~yGG-slenR~rf~~EiI~aIR~avG~d 216 (338)
T cd04733 138 AMTEEEIEDVIDRFAHAARLAQEAGFDGVQIHAAHGYLLSQFLSPLTNKRTDEYGG-SLENRARLLLEIYDAIRAAVGPG 216 (338)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEchhhhhHHHHhcCCcCCCCCccCCC-CHHHHHHHHHHHHHHHHHHcCCC
Confidence 35555555554 45557999999887654 24322 5677877555444 445556
Q ss_pred cEEEEecC-------CCCHHHHHHHHHHHHhCCCCEEEEcC
Q 018253 128 VKVIGNTG-------SNSTREAIHATEQGFAVGMHAALHIN 161 (359)
Q Consensus 128 vpViagvg-------~~st~~ai~la~~a~~~Gadav~v~p 161 (359)
.+|.+=++ +.+.++++++++..++.|+|.+-+..
T Consensus 217 ~~v~vris~~~~~~~g~~~eea~~ia~~Le~~Gvd~iev~~ 257 (338)
T cd04733 217 FPVGIKLNSADFQRGGFTEEDALEVVEALEEAGVDLVELSG 257 (338)
T ss_pred CeEEEEEcHHHcCCCCCCHHHHHHHHHHHHHcCCCEEEecC
Confidence 77776443 46889999999999999999987654
No 96
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=93.32 E-value=1.5 Score=43.55 Aligned_cols=38 Identities=8% Similarity=-0.025 Sum_probs=19.0
Q ss_pred HHHHHHhCCCCEE-----EEcCCCCCCCCHHHHHHHHHHHHhc
Q 018253 145 ATEQGFAVGMHAA-----LHINPYYGKTSLEGLISHFDSVLSM 182 (359)
Q Consensus 145 la~~a~~~Gadav-----~v~pP~y~~~s~~~l~~yf~~Ia~a 182 (359)
.+++|++.|..-. .+..|+..+.+.+.+.+.++++.+.
T Consensus 167 ~v~~Ak~~Gl~v~~~is~~fg~p~~~r~~~~~l~~~~~~~~~~ 209 (347)
T PLN02746 167 VALAAKKHSIPVRGYVSCVVGCPIEGPVPPSKVAYVAKELYDM 209 (347)
T ss_pred HHHHHHHcCCeEEEEEEeeecCCccCCCCHHHHHHHHHHHHHc
Confidence 4445555554331 1234555555555555555555554
No 97
>TIGR00677 fadh2_euk methylenetetrahydrofolate reductase, eukaryotic type. This protein is an FAD-containing flavoprotein.
Probab=93.25 E-value=2.6 Score=40.57 Aligned_cols=126 Identities=10% Similarity=0.191 Sum_probs=72.6
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEccCcc----C---cCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCC--------CHH
Q 018253 76 FDLEAYDDLVNMQIVNGAEGMIVGGTTG----E---GQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSN--------STR 140 (359)
Q Consensus 76 ID~~~l~~li~~li~~Gv~Gl~v~GstG----E---~~~LT~~Er~~li~~~v~~~~grvpViagvg~~--------st~ 140 (359)
.+...++..+..+-+.||+.+++++.-- . ...-..+-=.+|++.+.+..+.. +-+|++.. +.+
T Consensus 71 ~~~~~l~~~L~~~~~~Gi~niLal~GD~p~~~~~~~~~~~~f~~a~~Li~~i~~~~~~~--f~igva~~Pe~Hp~~~~~~ 148 (281)
T TIGR00677 71 MPIEMIDDALERAYSNGIQNILALRGDPPHIGDDWTEVEGGFQYAVDLVKYIRSKYGDY--FCIGVAGYPEGHPEAESVE 148 (281)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCcCHHHHHHHHHHhCCCc--eEEEEEECCCCCCCCCCHH
Confidence 3567999999999999999987665321 1 11111122466777655543322 33444333 333
Q ss_pred HHHHHHHHHHhCCCCEEEEcCCCCCCCCHHHHHHHHHHHHhc---CCeEEEeC-----------CCCCCCCCCHHHHHHH
Q 018253 141 EAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSM---GPTIIYNV-----------PSRTGQDIPPRVIHTM 206 (359)
Q Consensus 141 ~ai~la~~a~~~Gadav~v~pP~y~~~s~~~l~~yf~~Ia~a---~PiiiYn~-----------P~~tg~~ls~e~l~~L 206 (359)
.-++..+.=.++||| .+++-++| +.+.+.+|.+.+.++ .||+.==. ...+|+.++.+++++|
T Consensus 149 ~d~~~L~~Ki~aGA~-f~iTQ~~F---d~~~~~~f~~~~~~~gi~~PIi~GI~pi~s~~~~~~~~~~~Gi~vP~~l~~~l 224 (281)
T TIGR00677 149 LDLKYLKEKVDAGAD-FIITQLFY---DVDNFLKFVNDCRAIGIDCPIVPGIMPINNYASFLRRAKWSKTKIPQEIMSRL 224 (281)
T ss_pred HHHHHHHHHHHcCCC-Eeecccee---cHHHHHHHHHHHHHcCCCCCEEeeccccCCHHHHHHHHhcCCCCCCHHHHHHH
Confidence 334555544569999 55555677 567788888887764 46632111 2244666666666665
Q ss_pred h
Q 018253 207 A 207 (359)
Q Consensus 207 a 207 (359)
.
T Consensus 225 ~ 225 (281)
T TIGR00677 225 E 225 (281)
T ss_pred H
Confidence 4
No 98
>PRK04169 geranylgeranylglyceryl phosphate synthase-like protein; Reviewed
Probab=93.18 E-value=7.5 Score=36.42 Aligned_cols=172 Identities=19% Similarity=0.165 Sum_probs=92.0
Q ss_pred ecCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCCCHHHHHHHH
Q 018253 67 KTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHAT 146 (359)
Q Consensus 67 ~TPF~~dg~ID~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~st~~ai~la 146 (359)
+|=+|+|-.++.+.+ +.+.+.|.|+|+++||+|= |.+.-.++++.+.+ . .+||+.=.|+.+
T Consensus 11 ~~liDP~k~~~~~~~----~~~~~~gtdai~vGGS~~v----t~~~~~~~v~~ik~-~--~lPvilfp~~~~-------- 71 (232)
T PRK04169 11 VTLLDPDKPLPDEAL----EAICESGTDAIIVGGSDGV----TEENVDELVKAIKE-Y--DLPVILFPGNIE-------- 71 (232)
T ss_pred EEEECCCCCCCHHHH----HHHHhcCCCEEEEcCCCcc----chHHHHHHHHHHhc-C--CCCEEEeCCCcc--------
Confidence 344566666666665 5677899999999999986 55566667766665 3 589988655421
Q ss_pred HHHHhCCCCEEEEcC------CCCCCCCHHHHHHHHHHHH-hcCC--eEEEeCCCCCCC-------CCCHHHHH---HHh
Q 018253 147 EQGFAVGMHAALHIN------PYYGKTSLEGLISHFDSVL-SMGP--TIIYNVPSRTGQ-------DIPPRVIH---TMA 207 (359)
Q Consensus 147 ~~a~~~Gadav~v~p------P~y~~~s~~~l~~yf~~Ia-~a~P--iiiYn~P~~tg~-------~ls~e~l~---~La 207 (359)
...-+||++++.. |+|.-..+-+-..-+...- +..| -++-|.-+.++. +++.+.+. .|+
T Consensus 72 --~i~~~aDa~l~~svlNs~~~~~iig~~~~~~~~~~~~~le~ip~gYiv~~~~~~va~~~~~~~~~~~~~~~~~~~~lA 149 (232)
T PRK04169 72 --GISPGADAYLFPSVLNSRNPYWIIGAHVEAAPIIKKGGLEVIPEGYIVLNPGSKVAVVGTAAPIPLDKPDIAAYAALA 149 (232)
T ss_pred --ccCcCCCEEEEEEEecCCCcchHhhHHHHHHHHHhhcCcEECceEEEEECCCCeeeeeeccccCCCChHHHHHHHHHH
Confidence 1224589988864 5664333322222222111 1245 234443332222 34433333 344
Q ss_pred -c-CC-CeEEEeccCch-----hh----HhhhhCCceEEEecCC--ch-hhhhhhhcCCceeeccccc
Q 018253 208 -Q-SP-NLAGVKECVGN-----DR----VEHYTGNGIVVWSGND--DQ-CHDARWNHGATGVISVTSN 260 (359)
Q Consensus 208 -~-~p-nivGiK~ss~d-----~~----l~~~~~~~~~v~~G~d--~~-~~~~~l~~Ga~G~is~~an 260 (359)
+ .. .++.+-.+++- .. +++..+. ..++.|.. +. -....+..|++|++.|++-
T Consensus 150 ~~~~g~~~vYle~gs~~g~~~~~e~I~~v~~~~~~-~pvivGGGIrs~e~a~~~l~~GAD~VVVGSai 216 (232)
T PRK04169 150 AEYLGMPIVYLEYGGGAGDPVPPEMVKAVKKALDI-TPLIYGGGIRSPEQARELMAAGADTIVVGNII 216 (232)
T ss_pred HHHcCCCeEEEECCCCCCCCCCHHHHHHHHHhcCC-CcEEEECCCCCHHHHHHHHHhCCCEEEEChHH
Confidence 2 22 46667766542 12 2232222 13344432 11 2233477899999988654
No 99
>PRK00208 thiG thiazole synthase; Reviewed
Probab=93.11 E-value=1.1 Score=42.21 Aligned_cols=89 Identities=16% Similarity=0.149 Sum_probs=63.6
Q ss_pred HHHHHHCCCCEEEEcc-CccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCCCHHHHHHHHHHHHhCCCCEEEEcCCC
Q 018253 85 VNMQIVNGAEGMIVGG-TTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPY 163 (359)
Q Consensus 85 i~~li~~Gv~Gl~v~G-stGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~st~~ai~la~~a~~~Gadav~v~pP~ 163 (359)
.+.+.+.|++.+..+| ..|.+..++..|. ++.+++.. ++|||++.|=.+.+++ ..|.++|+|++++-.=.
T Consensus 137 ak~l~~~G~~~vmPlg~pIGsg~gi~~~~~---i~~i~e~~--~vpVIveaGI~tpeda----~~AmelGAdgVlV~SAI 207 (250)
T PRK00208 137 AKRLEEAGCAAVMPLGAPIGSGLGLLNPYN---LRIIIEQA--DVPVIVDAGIGTPSDA----AQAMELGADAVLLNTAI 207 (250)
T ss_pred HHHHHHcCCCEeCCCCcCCCCCCCCCCHHH---HHHHHHhc--CCeEEEeCCCCCHHHH----HHHHHcCCCEEEEChHh
Confidence 4556667999987755 3455566766554 55556652 6899998776666665 45566999999999877
Q ss_pred CCCCCHHHHHHHHHHHHhc
Q 018253 164 YGKTSLEGLISHFDSVLSM 182 (359)
Q Consensus 164 y~~~s~~~l~~yf~~Ia~a 182 (359)
....++..+.+.|..-.++
T Consensus 208 tka~dP~~ma~af~~Av~a 226 (250)
T PRK00208 208 AVAGDPVAMARAFKLAVEA 226 (250)
T ss_pred hCCCCHHHHHHHHHHHHHH
Confidence 7657788888888877653
No 100
>cd08211 RuBisCO_large_II Ribulose bisphosphate carboxylase large chain, Form II. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV , which differ in their taxonomic distribution and subunit composition. Form II is mainly found in bacteria, and forms large subunit oligomers (dimers, tetramers, etc.) that do not include small subunits.
Probab=93.10 E-value=2 Score=43.88 Aligned_cols=111 Identities=13% Similarity=0.025 Sum_probs=80.8
Q ss_pred cCCccccc-CCceE-----EeeecCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHh-
Q 018253 51 RTSAEDIK-ALRLI-----TAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNC- 123 (359)
Q Consensus 51 ~~~~~~~~-~~Gi~-----~al~TPF~~dg~ID~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~- 123 (359)
++..+.++ +.|+. |-+-|-+++.--+.-+.+.+++..+...| |-|====.-........+||...+-.+++.
T Consensus 139 ~fGi~G~R~~lgv~~~~~RPL~gtiiKP~~Glsp~~~a~~~y~~~~GG-D~IKDDE~l~dq~~~p~~eRv~~~~~a~~~a 217 (439)
T cd08211 139 SVNISDMWKVLGRPEVDGGYIAGTIIKPKLGLRPKPFAEACYAFWLGG-DFIKNDEPQANQPFCPLKKVIPLVADAMRRA 217 (439)
T ss_pred CCchhHHHHHhCCCCcCCCceEEeecCCcccCCHHHHHHHHHHHHhcC-CccccccccCCCCCCCHHHHHHHHHHHHHHH
Confidence 45555543 67777 77778788875699999999999999999 743211134566677889999666665554
Q ss_pred ---hCCCcEEEEecCCCCHHHHHHHHHHHHhCCC-----CEEEEcCC
Q 018253 124 ---FGASVKVIGNTGSNSTREAIHATEQGFAVGM-----HAALHINP 162 (359)
Q Consensus 124 ---~~grvpViagvg~~st~~ai~la~~a~~~Ga-----dav~v~pP 162 (359)
++.++-..+++++.++++.++.++.+++.|+ .++|+-+-
T Consensus 218 ~~eTG~~~~ya~NiTa~~~~em~~ra~~a~~~gg~~~G~~~vMv~~~ 264 (439)
T cd08211 218 QDETGEAKLFSANITADDPDEMIARGEYILEAFGPNAGHVAFLVDGY 264 (439)
T ss_pred HHhhCCcceEEecCCCCCHHHHHHHHHHHHHhcCcccCceEEEECcc
Confidence 4444334569998889999999999998876 88888643
No 101
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=93.08 E-value=7 Score=35.86 Aligned_cols=184 Identities=14% Similarity=0.099 Sum_probs=107.0
Q ss_pred CCceEEeeecCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCCC
Q 018253 59 ALRLITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNS 138 (359)
Q Consensus 59 ~~Gi~~al~TPF~~dg~ID~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~s 138 (359)
..++++.+-.. |.+....+++.|++.|++.+=+.= +.++..+.++...+..+ + +++|+|+--
T Consensus 7 ~~~liaVlr~~-------~~e~a~~~~~al~~~Gi~~iEit~--------~t~~a~~~i~~l~~~~~-~--~~vGAGTVl 68 (204)
T TIGR01182 7 EAKIVPVIRID-------DVDDALPLAKALIEGGLRVLEVTL--------RTPVALDAIRLLRKEVP-D--ALIGAGTVL 68 (204)
T ss_pred hCCEEEEEecC-------CHHHHHHHHHHHHHcCCCEEEEeC--------CCccHHHHHHHHHHHCC-C--CEEEEEeCC
Confidence 35566665433 889999999999999999876543 44667778888877664 3 677777655
Q ss_pred HHHHHHHHHHHHhCCCCEEEEcCCCCCCCCHHHHHHHHHHHHhcCCeEEEeCCCCCCCCCCHHHHHHHhcCCCeEEEecc
Q 018253 139 TREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSMGPTIIYNVPSRTGQDIPPRVIHTMAQSPNLAGVKEC 218 (359)
Q Consensus 139 t~~ai~la~~a~~~Gadav~v~pP~y~~~s~~~l~~yf~~Ia~a~PiiiYn~P~~tg~~ls~e~l~~La~~pnivGiK~s 218 (359)
+.+. ++.|.++||+.+ +.|.+ ..++.++-++ |+.|...|. ++|..+.+-.+.. .--+|.-
T Consensus 69 ~~~~---a~~a~~aGA~Fi--vsP~~----~~~v~~~~~~---------~~i~~iPG~-~TptEi~~A~~~G-a~~vKlF 128 (204)
T TIGR01182 69 NPEQ---LRQAVDAGAQFI--VSPGL----TPELAKHAQD---------HGIPIIPGV-ATPSEIMLALELG-ITALKLF 128 (204)
T ss_pred CHHH---HHHHHHcCCCEE--ECCCC----CHHHHHHHHH---------cCCcEECCC-CCHHHHHHHHHCC-CCEEEEC
Confidence 5544 677778999876 45666 3566666542 233334464 5554444433321 1225543
Q ss_pred Cch-----hhHhhhhC--CceEEE--ecCCchhhhhhhhcCCceeecccccccHHHHHHHHHcCCcHHHHHHHHH
Q 018253 219 VGN-----DRVEHYTG--NGIVVW--SGNDDQCHDARWNHGATGVISVTSNLVPGMMRELMFGGKNPSLNTKLFP 284 (359)
Q Consensus 219 s~d-----~~l~~~~~--~~~~v~--~G~d~~~~~~~l~~Ga~G~is~~an~~P~l~~~l~~ag~a~~l~~~l~~ 284 (359)
-.+ ..++.+.+ +++.++ .|-+..-+..++.+|+.++..| ++++|+.. .++++..++.++...
T Consensus 129 PA~~~GG~~yikal~~plp~i~~~ptGGV~~~N~~~~l~aGa~~vg~G-s~L~~~~~---~~~~~~~~i~~~a~~ 199 (204)
T TIGR01182 129 PAEVSGGVKMLKALAGPFPQVRFCPTGGINLANVRDYLAAPNVACGGG-SWLVPKDL---IAAGDWDEITRLARE 199 (204)
T ss_pred CchhcCCHHHHHHHhccCCCCcEEecCCCCHHHHHHHHhCCCEEEEEC-hhhcCchh---hccccHHHHHHHHHH
Confidence 222 22333322 344444 3665555667788999877655 45555322 233444444444333
No 102
>TIGR03332 salvage_mtnW 2,3-diketo-5-methylthiopentyl-1-phosphate enolase. Members of this family are the methionine salvage pathway enzyme 2,3-diketo-5-methylthiopentyl-1-phosphate enolase, a homolog of RuBisCO. This protein family seems restricted to Bacillus subtilis and close relatives, where two separate proteins carry the enolase and phosphatase activities that in other species occur in a single protein, MtnC (TIGR01691).
Probab=93.07 E-value=3.4 Score=41.87 Aligned_cols=97 Identities=14% Similarity=0.064 Sum_probs=70.3
Q ss_pred cCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhh----CCCcEEEEecCCCCHHHHH
Q 018253 68 TPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCF----GASVKVIGNTGSNSTREAI 143 (359)
Q Consensus 68 TPF~~dg~ID~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~----~grvpViagvg~~st~~ai 143 (359)
|-+++.--++.+.+.+++..+...|+|=|====.-.....-..+||...+-.+++.+ +.++-..+++++ ++.+.+
T Consensus 144 tiiKp~~Gl~~~~~A~~~y~~~~GGvD~IKDDE~l~dq~~~p~~~Rv~~~~~a~~~a~~eTG~~~~y~~NiT~-~~~em~ 222 (407)
T TIGR03332 144 SIFKGMIGRDLGYLKEQLRQQALGGVDLVKDDEILFETGLAPFEKRITEGKEVLQEVYEQTGHKTLYAVNLTG-RTFDLK 222 (407)
T ss_pred eEeCCccCCCHHHHHHHHHHHhccCcccccCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCcceEeecCCC-CHHHHH
Confidence 334433348999999999999999988432112234455667899998887777754 344445668875 678899
Q ss_pred HHHHHHHhCCCCEEEEcCCCCC
Q 018253 144 HATEQGFAVGMHAALHINPYYG 165 (359)
Q Consensus 144 ~la~~a~~~Gadav~v~pP~y~ 165 (359)
+.++.+++.|++++|+-+-.+.
T Consensus 223 ~ra~~a~~~G~~~~mv~~~~~G 244 (407)
T TIGR03332 223 DKAKRAAELGADVLLFNVFAYG 244 (407)
T ss_pred HHHHHHHHhCCCEEEEeccccC
Confidence 9999999999999999866554
No 103
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=93.03 E-value=6.6 Score=35.95 Aligned_cols=171 Identities=12% Similarity=0.099 Sum_probs=101.7
Q ss_pred CHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCCCHHHHHHHHHHHHhCCCCE
Q 018253 77 DLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHA 156 (359)
Q Consensus 77 D~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~st~~ai~la~~a~~~Gada 156 (359)
|.+.....++.+++.|+..+=+.= +..+..+.++...+..+ + +++|+|+--+.+ .++.|.++||+-
T Consensus 14 ~~~~a~~ia~al~~gGi~~iEit~--------~tp~a~~~I~~l~~~~~-~--~~vGAGTVl~~e---~a~~ai~aGA~F 79 (201)
T PRK06015 14 DVEHAVPLARALAAGGLPAIEITL--------RTPAALDAIRAVAAEVE-E--AIVGAGTILNAK---QFEDAAKAGSRF 79 (201)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEeC--------CCccHHHHHHHHHHHCC-C--CEEeeEeCcCHH---HHHHHHHcCCCE
Confidence 889999999999999999876543 44556777877777663 3 788888765554 567788899985
Q ss_pred EEEcCCCCCCCCHHHHHHHHHHHHhcCCeEEEeCCCCCCCCCCHHHHHHHhcCCCeEEEeccCch-----hhHhhhhC--
Q 018253 157 ALHINPYYGKTSLEGLISHFDSVLSMGPTIIYNVPSRTGQDIPPRVIHTMAQSPNLAGVKECVGN-----DRVEHYTG-- 229 (359)
Q Consensus 157 v~v~pP~y~~~s~~~l~~yf~~Ia~a~PiiiYn~P~~tg~~ls~e~l~~La~~pnivGiK~ss~d-----~~l~~~~~-- 229 (359)
++ .|.+ .+++.++-++ |+.|...|. ++|..+.+-.+..- .-+|.--.+ ..++.+.+
T Consensus 80 iv--SP~~----~~~vi~~a~~---------~~i~~iPG~-~TptEi~~A~~~Ga-~~vK~FPa~~~GG~~yikal~~pl 142 (201)
T PRK06015 80 IV--SPGT----TQELLAAAND---------SDVPLLPGA-ATPSEVMALREEGY-TVLKFFPAEQAGGAAFLKALSSPL 142 (201)
T ss_pred EE--CCCC----CHHHHHHHHH---------cCCCEeCCC-CCHHHHHHHHHCCC-CEEEECCchhhCCHHHHHHHHhhC
Confidence 43 4655 3667776553 334434454 66655544333221 125643221 22333321
Q ss_pred CceEEE--ecCCchhhhhhhhcCCceeecccccccHHHHHHHHHcCCcHHHHHHH
Q 018253 230 NGIVVW--SGNDDQCHDARWNHGATGVISVTSNLVPGMMRELMFGGKNPSLNTKL 282 (359)
Q Consensus 230 ~~~~v~--~G~d~~~~~~~l~~Ga~G~is~~an~~P~l~~~l~~ag~a~~l~~~l 282 (359)
+++.++ .|-+..-+..++.+|+..+++ .++++|+.. .++++..++.++.
T Consensus 143 p~~~l~ptGGV~~~n~~~~l~ag~~~~~g-gs~l~~~~~---~~~~~~~~i~~~a 193 (201)
T PRK06015 143 AGTFFCPTGGISLKNARDYLSLPNVVCVG-GSWVAPKEL---VAAGDWAGITKLA 193 (201)
T ss_pred CCCcEEecCCCCHHHHHHHHhCCCeEEEE-chhhCCchh---hhcccHHHHHHHH
Confidence 344444 366555566778888886666 556666432 3344444444433
No 104
>cd03307 Mta_CmuA_like MtaA_CmuA_like family. MtaA/CmuA, also MtsA, or methyltransferase 2 (MT2) MT2-A and MT2-M isozymes, are methylcobamide:Coenzyme M methyltransferases, which play a role in metabolic pathways of methane formation from various substrates, such as methylated amines and methanol. Coenzyme M, 2-mercaptoethylsulfonate or CoM, is methylated during methanogenesis in a reaction catalyzed by three proteins. A methyltransferase methylates the corrinoid cofactor, which is bound to a second polypeptide, a corrinoid protein. The methylated corrinoid protein then serves as a substrate for MT2-A and related enzymes, which methylate CoM.
Probab=93.02 E-value=3.2 Score=40.43 Aligned_cols=74 Identities=15% Similarity=0.073 Sum_probs=51.1
Q ss_pred HHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHH----HHHHHhhCCCcEEEEecCCCCHHHHHHHHHHHHhCCCCE
Q 018253 81 YDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLI----GHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHA 156 (359)
Q Consensus 81 l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li----~~~v~~~~grvpViagvg~~st~~ai~la~~a~~~Gada 156 (359)
+.++++.++++|++++.+.-+.|....+|.++.++.+ +.+++.+.. .|++.++.... .. +.....+.|+|.
T Consensus 173 ~~~~~~~~~eaGad~i~i~d~~a~~~~isp~~f~e~~~p~~k~i~~~i~~-~~~ilh~cG~~-~~---~l~~~~~~g~d~ 247 (326)
T cd03307 173 CIEYAKAQLEAGADIITIADPTASPELISPEFYEEFALPYHKKIVKELHG-CPTILHICGNT-TP---ILEYIAQCGFDG 247 (326)
T ss_pred HHHHHHHHHHcCCCEEEecCCCccccccCHHHHHHHHHHHHHHHHHHHhc-CCcEEEECCCC-hh---HHHHHHHcCCCe
Confidence 3455666778999999999998888888999998776 455666655 67888754433 22 233444567776
Q ss_pred EEE
Q 018253 157 ALH 159 (359)
Q Consensus 157 v~v 159 (359)
+.+
T Consensus 248 ~~~ 250 (326)
T cd03307 248 ISV 250 (326)
T ss_pred ecc
Confidence 543
No 105
>COG0167 PyrD Dihydroorotate dehydrogenase [Nucleotide transport and metabolism]
Probab=93.01 E-value=1 Score=43.90 Aligned_cols=100 Identities=18% Similarity=0.296 Sum_probs=72.6
Q ss_pred CHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHH--------------------HHHHHHHHHHHhhCCCcEEEEecC-
Q 018253 77 DLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWD--------------------EHIMLIGHTVNCFGASVKVIGNTG- 135 (359)
Q Consensus 77 D~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~--------------------Er~~li~~~v~~~~grvpViagvg- 135 (359)
|.+.+....+.+.+.|+|||.+.=|+........+ -=.+++..+.+.+++++|||. +|
T Consensus 171 ~~~di~~iA~~~~~~g~Dgl~~~NT~~~~~~id~~~~~~~~~~~~GGLSG~~ikp~al~~v~~l~~~~~~~ipIIG-vGG 249 (310)
T COG0167 171 NITDIDEIAKAAEEAGADGLIAINTTKSGMKIDLETKKPVLANETGGLSGPPLKPIALRVVAELYKRLGGDIPIIG-VGG 249 (310)
T ss_pred CHHHHHHHHHHHHHcCCcEEEEEeeccccccccccccccccCcCCCCcCcccchHHHHHHHHHHHHhcCCCCcEEE-ecC
Confidence 78889999999999999999988877744422111 235677777778888999884 54
Q ss_pred CCCHHHHHHHHHHHHhCCCCEEEEcCCCCCC-CC-HHHHHHHHHHHHh
Q 018253 136 SNSTREAIHATEQGFAVGMHAALHINPYYGK-TS-LEGLISHFDSVLS 181 (359)
Q Consensus 136 ~~st~~ai~la~~a~~~Gadav~v~pP~y~~-~s-~~~l~~yf~~Ia~ 181 (359)
=.|.++|+|... +||+++.+-.-.++. +. -++|.+...+..+
T Consensus 250 I~s~~DA~E~i~----aGA~~vQv~Tal~~~Gp~i~~~I~~~l~~~l~ 293 (310)
T COG0167 250 IETGEDALEFIL----AGASAVQVGTALIYKGPGIVKEIIKGLARWLE 293 (310)
T ss_pred cCcHHHHHHHHH----cCCchheeeeeeeeeCchHHHHHHHHHHHHHH
Confidence 346788999887 899999998886654 43 3556666555544
No 106
>PLN02591 tryptophan synthase
Probab=93.00 E-value=8.3 Score=36.48 Aligned_cols=180 Identities=17% Similarity=0.155 Sum_probs=108.9
Q ss_pred cCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEccCccC----cC------------CCCHHHHHHHHHHHHHhhCCCcEEE
Q 018253 68 TPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGE----GQ------------LMSWDEHIMLIGHTVNCFGASVKVI 131 (359)
Q Consensus 68 TPF~~dg~ID~~~l~~li~~li~~Gv~Gl~v~GstGE----~~------------~LT~~Er~~li~~~v~~~~grvpVi 131 (359)
-||---|.-|++...++++.+++.|+|-|=++=-.+. ++ -+|.+.-.++++.+.+. -++|++
T Consensus 5 i~yi~aG~P~~e~~~~~~~~l~~~Gad~iElGiPfSDP~aDGpvIq~a~~rAL~~G~~~~~~~~~~~~~r~~--~~~p~i 82 (250)
T PLN02591 5 IPYITAGDPDLDTTAEALRLLDACGADVIELGVPYSDPLADGPVIQAAATRALEKGTTLDSVISMLKEVAPQ--LSCPIV 82 (250)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCcccCHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC--CCCCEE
Confidence 3555678899999999999999999997754433222 21 23444445555554432 357876
Q ss_pred EecCCCCHH--HHHHHHHHHHhCCCCEEEEcCCCCCCCCHHHHHHHHHHHHhc-CCeEEEeCCCCCCCCCCHHHHHHHhc
Q 018253 132 GNTGSNSTR--EAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSM-GPTIIYNVPSRTGQDIPPRVIHTMAQ 208 (359)
Q Consensus 132 agvg~~st~--~ai~la~~a~~~Gadav~v~pP~y~~~s~~~l~~yf~~Ia~a-~PiiiYn~P~~tg~~ls~e~l~~La~ 208 (359)
.=...|..- -.=++.+.++++|+|++++.. ...++..+|.+...+. +..+..=.| .-+.+-++++++
T Consensus 83 lm~Y~N~i~~~G~~~F~~~~~~aGv~GviipD-----LP~ee~~~~~~~~~~~gl~~I~lv~P-----tt~~~ri~~ia~ 152 (250)
T PLN02591 83 LFTYYNPILKRGIDKFMATIKEAGVHGLVVPD-----LPLEETEALRAEAAKNGIELVLLTTP-----TTPTERMKAIAE 152 (250)
T ss_pred EEecccHHHHhHHHHHHHHHHHcCCCEEEeCC-----CCHHHHHHHHHHHHHcCCeEEEEeCC-----CCCHHHHHHHHH
Confidence 555544322 234578899999999999862 2347778887777665 554444444 345677888874
Q ss_pred -CCCeEEE---eccCch-----h---h-Hhhhh-CCceEEEecCCch---hhhhhhhcCCceeecccc
Q 018253 209 -SPNLAGV---KECVGN-----D---R-VEHYT-GNGIVVWSGNDDQ---CHDARWNHGATGVISVTS 259 (359)
Q Consensus 209 -~pnivGi---K~ss~d-----~---~-l~~~~-~~~~~v~~G~d~~---~~~~~l~~Ga~G~is~~a 259 (359)
.+.++.+ .-.++. . . +.+.. ..+.-++.|..-. -....+..|+||+|.|++
T Consensus 153 ~~~gFIY~Vs~~GvTG~~~~~~~~~~~~i~~vk~~~~~Pv~vGFGI~~~e~v~~~~~~GADGvIVGSa 220 (250)
T PLN02591 153 ASEGFVYLVSSTGVTGARASVSGRVESLLQELKEVTDKPVAVGFGISKPEHAKQIAGWGADGVIVGSA 220 (250)
T ss_pred hCCCcEEEeeCCCCcCCCcCCchhHHHHHHHHHhcCCCceEEeCCCCCHHHHHHHHhcCCCEEEECHH
Confidence 4555544 212221 1 1 11111 1355666766422 223346789999998865
No 107
>PRK01008 queuine tRNA-ribosyltransferase; Provisional
Probab=92.97 E-value=0.88 Score=45.53 Aligned_cols=81 Identities=16% Similarity=0.195 Sum_probs=67.1
Q ss_pred CCCCCHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEE-EEecCCCCHHHHHHHHHHHHh
Q 018253 73 DGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKV-IGNTGSNSTREAIHATEQGFA 151 (359)
Q Consensus 73 dg~ID~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpV-iagvg~~st~~ai~la~~a~~ 151 (359)
.|.+|.+-=++-++.+.+.+.+|+.++|+.|| +.+|..++++.+....+...|. +.|+|. ..+.++ +.+
T Consensus 205 QGG~~~dLR~~Sa~~l~~~~~~GyaIGG~vge----~~~~~~~il~~~~~~LP~~kPRyLmGvG~--P~di~~----~V~ 274 (372)
T PRK01008 205 HGGIDPDQRKIGCKFVEDLPFDGSAIGGSLGK----NLQEMVEVVGVTTSNLSKERPVHLLGIGD--LPSIWA----TVG 274 (372)
T ss_pred cCCCCHHHHHHHHHHHHhCCCCEEEECCCCCC----CHHHHHHHHHHHHhhCCCCCCeEEecCCC--HHHHHH----HHH
Confidence 57788888888889999999999999999998 8899999999999999888886 669985 555554 667
Q ss_pred CCCCEEEEcCCC
Q 018253 152 VGMHAALHINPY 163 (359)
Q Consensus 152 ~Gadav~v~pP~ 163 (359)
.|+|-.=.+-|.
T Consensus 275 ~GvD~FDcv~Pt 286 (372)
T PRK01008 275 FGIDSFDSSYPT 286 (372)
T ss_pred hCCCeeeeccch
Confidence 999977666554
No 108
>PF01207 Dus: Dihydrouridine synthase (Dus); InterPro: IPR001269 Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 (P53759 from SWISSPROT) from Saccharomyces cerevisiae (Baker's yeast) acts on pre-tRNA-Phe, while Dus 2 (P53720 from SWISSPROT) acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD []. Some family members may be targeted to the mitochondria and even have a role in mitochondria []. ; GO: 0017150 tRNA dihydrouridine synthase activity, 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing, 0055114 oxidation-reduction process; PDB: 1VHN_A 3B0P_A 3B0V_D 3B0U_Y.
Probab=92.95 E-value=1.1 Score=43.49 Aligned_cols=126 Identities=17% Similarity=0.123 Sum_probs=79.1
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEc----------cCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEec--CC-CCHHHH
Q 018253 76 FDLEAYDDLVNMQIVNGAEGMIVG----------GTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNT--GS-NSTREA 142 (359)
Q Consensus 76 ID~~~l~~li~~li~~Gv~Gl~v~----------GstGE~~~LT~~Er~~li~~~v~~~~grvpViagv--g~-~st~~a 142 (359)
=|.+.+.+-++.+.+.|+++|=+| +..|.+..-+.+.-.++++.+++.++ +||-+-+ +- .+.+++
T Consensus 63 ~~~~~~~~aa~~~~~~~~~~IDlN~GCP~~~v~~~g~Ga~Ll~~p~~~~~iv~~~~~~~~--~pvsvKiR~g~~~~~~~~ 140 (309)
T PF01207_consen 63 NDPEDLAEAAEIVAELGFDGIDLNMGCPAPKVTKGGAGAALLKDPDLLAEIVKAVRKAVP--IPVSVKIRLGWDDSPEET 140 (309)
T ss_dssp S-HHHHHHHHHHHCCTT-SEEEEEE---SHHHHHCT-GGGGGC-HHHHHHHHHHHHHH-S--SEEEEEEESECT--CHHH
T ss_pred ccHHHHHHHHHhhhccCCcEEeccCCCCHHHHhcCCcChhhhcChHHhhHHHHhhhcccc--cceEEecccccccchhHH
Confidence 477889999988777799998766 44788888888888999999998776 5665533 32 357889
Q ss_pred HHHHHHHHhCCCCEEEEcCCCC-CCCCHHHHHHHHHHHHhcCCe-EEEeCCCCCCCCCCHHHHHHHhc
Q 018253 143 IHATEQGFAVGMHAALHINPYY-GKTSLEGLISHFDSVLSMGPT-IIYNVPSRTGQDIPPRVIHTMAQ 208 (359)
Q Consensus 143 i~la~~a~~~Gadav~v~pP~y-~~~s~~~l~~yf~~Ia~a~Pi-iiYn~P~~tg~~ls~e~l~~La~ 208 (359)
+++++..++.|++++.|-+=.- ...+...=.+++..|.+..+| +++| |--.+++.+.++.+
T Consensus 141 ~~~~~~l~~~G~~~i~vH~Rt~~q~~~~~a~w~~i~~i~~~~~ipvi~N-----GdI~s~~d~~~~~~ 203 (309)
T PF01207_consen 141 IEFARILEDAGVSAITVHGRTRKQRYKGPADWEAIAEIKEALPIPVIAN-----GDIFSPEDAERMLE 203 (309)
T ss_dssp HHHHHHHHHTT--EEEEECS-TTCCCTS---HHHHHHCHHC-TSEEEEE-----SS--SHHHHHHHCC
T ss_pred HHHHHHhhhcccceEEEecCchhhcCCcccchHHHHHHhhcccceeEEc-----CccCCHHHHHHHHH
Confidence 9999999999999998886321 111222235566666666554 4555 44466766666654
No 109
>cd06557 KPHMT-like Ketopantoate hydroxymethyltransferase (KPHMT) is the first enzyme in the pantothenate biosynthesis pathway. Ketopantoate hydroxymethyltransferase (KPHMT) catalyzes the first committed step in the biosynthesis of pantothenate (vitamin B5), which is a precursor to coenzyme A and is required for penicillin biosynthesis.
Probab=92.93 E-value=0.5 Score=44.83 Aligned_cols=118 Identities=18% Similarity=0.140 Sum_probs=69.6
Q ss_pred cCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecC------------
Q 018253 68 TPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTG------------ 135 (359)
Q Consensus 68 TPF~~dg~ID~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg------------ 135 (359)
+||..-+.=..+.+++-++.+.+.|++|+-+=|+ +|..+.++.+++ .++||+.++|
T Consensus 80 ~~fg~y~~~~~~av~~a~r~~~~aGa~aVkiEd~---------~~~~~~I~al~~---agipV~gHiGL~pq~~~~~gg~ 147 (254)
T cd06557 80 MPFGSYQTSPEQALRNAARLMKEAGADAVKLEGG---------AEVAETIRALVD---AGIPVMGHIGLTPQSVNQLGGY 147 (254)
T ss_pred CCCCcccCCHHHHHHHHHHHHHHhCCeEEEEcCc---------HHHHHHHHHHHH---cCCCeeccccccceeeeccCCc
Confidence 4775333333444555555444499999999775 366666666554 4678773332
Q ss_pred ------CCCHHHHHHHHHHHHhCCCCEEEEcCCCCCCCCHHHHHHHHHHHHhc--CCeEEE-eCCCCCCCCCCHHHHHHH
Q 018253 136 ------SNSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSM--GPTIIY-NVPSRTGQDIPPRVIHTM 206 (359)
Q Consensus 136 ------~~st~~ai~la~~a~~~Gadav~v~pP~y~~~s~~~l~~yf~~Ia~a--~PiiiY-n~P~~tg~~ls~e~l~~L 206 (359)
....+++++.++.++++|||++.+--+ + .+. .++|.++ .|+|=. -=|...|+-+=...+.-+
T Consensus 148 ~~~grt~~~a~~~i~ra~a~~~AGA~~i~lE~v----~-~~~----~~~i~~~v~iP~igiGaG~~~dgqvlv~~D~lG~ 218 (254)
T cd06557 148 KVQGKTEEEAERLLEDALALEEAGAFALVLECV----P-AEL----AKEITEALSIPTIGIGAGPDCDGQVLVWHDMLGL 218 (254)
T ss_pred eeccCCHHHHHHHHHHHHHHHHCCCCEEEEcCC----C-HHH----HHHHHHhCCCCEEEeccCCCCCceeehHHhhcCC
Confidence 222678999999999999999988644 2 232 3445554 476533 334445554444333333
No 110
>cd03332 LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-binding domain. LMO is a FMN-containing enzyme that catalyzes the conversion of L-lactate and oxygen to acetate, carbon dioxide, and water. LMO is a member of the family of alpha-hydroxy acid oxidases. It is thought to be a homooctamer with two- and four- fold axes in the center of the octamer.
Probab=92.85 E-value=0.54 Score=47.21 Aligned_cols=92 Identities=18% Similarity=0.290 Sum_probs=63.0
Q ss_pred HHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCCCHHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 018253 86 NMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYYG 165 (359)
Q Consensus 86 ~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~st~~ai~la~~a~~~Gadav~v~pP~y~ 165 (359)
..+++.|++||.+-+..|-...-... -..++..+++.+++++|||+.=|=.+-.+.+ .|..+|||++++--|+.+
T Consensus 268 ~~a~~~G~d~I~vsnhGGr~~d~~~~-t~~~L~ei~~~~~~~~~vi~dGGIr~G~Dv~----KALaLGA~~v~iGr~~l~ 342 (383)
T cd03332 268 RRAVEAGVDGVVVSNHGGRQVDGSIA-ALDALPEIVEAVGDRLTVLFDSGVRTGADIM----KALALGAKAVLIGRPYAY 342 (383)
T ss_pred HHHHHCCCCEEEEcCCCCcCCCCCcC-HHHHHHHHHHHhcCCCeEEEeCCcCcHHHHH----HHHHcCCCEEEEcHHHHH
Confidence 35667999999999888754321222 2335556666677789999854433333332 345689999999999875
Q ss_pred C---CCHHHHHHHHHHHHhc
Q 018253 166 K---TSLEGLISHFDSVLSM 182 (359)
Q Consensus 166 ~---~s~~~l~~yf~~Ia~a 182 (359)
. ..++++.++++.+.+.
T Consensus 343 ~l~~~G~~gv~~~l~~l~~E 362 (383)
T cd03332 343 GLALGGEDGVEHVLRNLLAE 362 (383)
T ss_pred HHHhccHHHHHHHHHHHHHH
Confidence 4 4788898888887664
No 111
>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.
Probab=92.83 E-value=0.83 Score=44.79 Aligned_cols=85 Identities=12% Similarity=0.104 Sum_probs=62.9
Q ss_pred CHHHHHHHHHHHHHCCCCEEEEccCc----cCcCCCCHHHH-HHHHHHHHHhhCCCcEEEEecCCCCHHHHHHHHHHHHh
Q 018253 77 DLEAYDDLVNMQIVNGAEGMIVGGTT----GEGQLMSWDEH-IMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFA 151 (359)
Q Consensus 77 D~~~l~~li~~li~~Gv~Gl~v~Gst----GE~~~LT~~Er-~~li~~~v~~~~grvpViagvg~~st~~ai~la~~a~~ 151 (359)
+.+.+.+.++.+.+.|+++|-++-+. ......+.+|+ .++++.+.+.+ ++||++=++. ...+..+.++.+++
T Consensus 110 ~~~~~~~~a~~~~~~gad~iElN~s~~~~~~~~~g~~~~~~~~eiv~~v~~~~--~iPv~vKl~p-~~~~~~~~a~~l~~ 186 (325)
T cd04739 110 SAGGWVDYARQIEEAGADALELNIYALPTDPDISGAEVEQRYLDILRAVKSAV--TIPVAVKLSP-FFSALAHMAKQLDA 186 (325)
T ss_pred CHHHHHHHHHHHHhcCCCEEEEeCCCCCCCCCcccchHHHHHHHHHHHHHhcc--CCCEEEEcCC-CccCHHHHHHHHHH
Confidence 45778888888888899999887763 22234444444 46677766655 5899998764 35588999999999
Q ss_pred CCCCEEEEcCCCC
Q 018253 152 VGMHAALHINPYY 164 (359)
Q Consensus 152 ~Gadav~v~pP~y 164 (359)
+|+|++.+..-.+
T Consensus 187 ~Gadgi~~~nt~~ 199 (325)
T cd04739 187 AGADGLVLFNRFY 199 (325)
T ss_pred cCCCeEEEEcCcC
Confidence 9999999987654
No 112
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=92.82 E-value=7.8 Score=35.71 Aligned_cols=168 Identities=13% Similarity=0.089 Sum_probs=102.9
Q ss_pred cCCceEEeeecCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCC
Q 018253 58 KALRLITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSN 137 (359)
Q Consensus 58 ~~~Gi~~al~TPF~~dg~ID~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~ 137 (359)
.-.++++.+-.. |.+....+++-|++.|+.-+=+.= +...-.+.++...+..+.+-.+++|+|+-
T Consensus 11 ~~~~vi~vir~~-------~~~~a~~~~~al~~~Gi~~iEit~--------~~~~a~~~i~~l~~~~~~~p~~~vGaGTV 75 (213)
T PRK06552 11 KANGVVAVVRGE-------SKEEALKISLAVIKGGIKAIEVTY--------TNPFASEVIKELVELYKDDPEVLIGAGTV 75 (213)
T ss_pred HHCCEEEEEECC-------CHHHHHHHHHHHHHCCCCEEEEEC--------CCccHHHHHHHHHHHcCCCCCeEEeeeeC
Confidence 346777776544 889999999999999999876543 33446677777777654321388899876
Q ss_pred CHHHHHHHHHHHHhCCCCEEEEcCCCCCCCCHHHHHHHHHHHHhcCCeEEEeCCCCCCCCCCHHHHHHHhc-CCCeEEEe
Q 018253 138 STREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSMGPTIIYNVPSRTGQDIPPRVIHTMAQ-SPNLAGVK 216 (359)
Q Consensus 138 st~~ai~la~~a~~~Gadav~v~pP~y~~~s~~~l~~yf~~Ia~a~PiiiYn~P~~tg~~ls~e~l~~La~-~pnivGiK 216 (359)
.+.+ .++.|.++||+.++ .|.+ .+++.+|-++. .+|+ ..|. .+++.+.+..+ -..++++=
T Consensus 76 ~~~~---~~~~a~~aGA~Fiv--sP~~----~~~v~~~~~~~--~i~~-------iPG~-~T~~E~~~A~~~Gad~vklF 136 (213)
T PRK06552 76 LDAV---TARLAILAGAQFIV--SPSF----NRETAKICNLY--QIPY-------LPGC-MTVTEIVTALEAGSEIVKLF 136 (213)
T ss_pred CCHH---HHHHHHHcCCCEEE--CCCC----CHHHHHHHHHc--CCCE-------ECCc-CCHHHHHHHHHcCCCEEEEC
Confidence 6655 55777889998766 5665 36777774421 1333 2354 46655555443 34555550
Q ss_pred --ccCchhhHhhhh---C-CceEEEecCCchhhhhhhhcCCceeecccc
Q 018253 217 --ECVGNDRVEHYT---G-NGIVVWSGNDDQCHDARWNHGATGVISVTS 259 (359)
Q Consensus 217 --~ss~d~~l~~~~---~-~~~~v~~G~d~~~~~~~l~~Ga~G~is~~a 259 (359)
+..+-..++.+. + -.|....|-...-+..++..|++++..+.+
T Consensus 137 Pa~~~G~~~ik~l~~~~p~ip~~atGGI~~~N~~~~l~aGa~~vavgs~ 185 (213)
T PRK06552 137 PGSTLGPSFIKAIKGPLPQVNVMVTGGVNLDNVKDWFAAGADAVGIGGE 185 (213)
T ss_pred CcccCCHHHHHHHhhhCCCCEEEEECCCCHHHHHHHHHCCCcEEEEchH
Confidence 111212233221 1 234445577656666778899998765543
No 113
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=92.77 E-value=4.2 Score=40.26 Aligned_cols=122 Identities=12% Similarity=0.080 Sum_probs=73.2
Q ss_pred HHHHHHHHHHHCCCCEEEEccCc----------------cCcCCCCHHHHHHHHHHH----HHhhCCCcEEEEec-----
Q 018253 80 AYDDLVNMQIVNGAEGMIVGGTT----------------GEGQLMSWDEHIMLIGHT----VNCFGASVKVIGNT----- 134 (359)
Q Consensus 80 ~l~~li~~li~~Gv~Gl~v~Gst----------------GE~~~LT~~Er~~li~~~----v~~~~grvpViagv----- 134 (359)
.+.+-+.+..++|.|||=+.|.. .|+-- |.+.|.+++..+ .+.++.+.+|.+=+
T Consensus 138 ~f~~aA~~a~~aGfDgVeih~ahGyLl~qFlsp~~N~RtD~yGG-slenR~r~~~eiv~aIR~~vG~d~~v~iRi~~~D~ 216 (353)
T cd02930 138 DFARCAALAREAGYDGVEIMGSEGYLINQFLAPRTNKRTDEWGG-SFENRMRFPVEIVRAVRAAVGEDFIIIYRLSMLDL 216 (353)
T ss_pred HHHHHHHHHHHcCCCEEEEecccchHHHHhcCCccCCCcCccCC-CHHHHhHHHHHHHHHHHHHcCCCceEEEEeccccc
Confidence 34444455567999999887732 22222 456666555444 44455566665322
Q ss_pred --CCCCHHHHHHHHHHHHhCCCCEEEEcC-----CCCC--C-CCHHHHHHHHHHHHhc--CCeEEEeCCCCCCCCCCHHH
Q 018253 135 --GSNSTREAIHATEQGFAVGMHAALHIN-----PYYG--K-TSLEGLISHFDSVLSM--GPTIIYNVPSRTGQDIPPRV 202 (359)
Q Consensus 135 --g~~st~~ai~la~~a~~~Gadav~v~p-----P~y~--~-~s~~~l~~yf~~Ia~a--~PiiiYn~P~~tg~~ls~e~ 202 (359)
+..+.++++++++..+++|+|.+-+.. |... . ..+.....+.+.|.+. .||+. .|.-.+++.
T Consensus 217 ~~~g~~~~e~~~i~~~Le~~G~d~i~vs~g~~e~~~~~~~~~~~~~~~~~~~~~ik~~v~iPVi~------~G~i~~~~~ 290 (353)
T cd02930 217 VEGGSTWEEVVALAKALEAAGADILNTGIGWHEARVPTIATSVPRGAFAWATAKLKRAVDIPVIA------SNRINTPEV 290 (353)
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCEEEeCCCcCCCCCccccccCCchhhHHHHHHHHHhCCCCEEE------cCCCCCHHH
Confidence 235889999999999999999998842 2110 0 1111234455666665 46554 344557888
Q ss_pred HHHHhc
Q 018253 203 IHTMAQ 208 (359)
Q Consensus 203 l~~La~ 208 (359)
++++.+
T Consensus 291 a~~~i~ 296 (353)
T cd02930 291 AERLLA 296 (353)
T ss_pred HHHHHH
Confidence 888764
No 114
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=92.74 E-value=2.5 Score=40.14 Aligned_cols=98 Identities=9% Similarity=-0.012 Sum_probs=72.6
Q ss_pred HHHHHHCCCCEEEEccCccCc-----CCCCHHHHHHHHHHHHHhhC-CCcEEEEec---CCCCHHHHHHHHHHHHhCCCC
Q 018253 85 VNMQIVNGAEGMIVGGTTGEG-----QLMSWDEHIMLIGHTVNCFG-ASVKVIGNT---GSNSTREAIHATEQGFAVGMH 155 (359)
Q Consensus 85 i~~li~~Gv~Gl~v~GstGE~-----~~LT~~Er~~li~~~v~~~~-grvpViagv---g~~st~~ai~la~~a~~~Gad 155 (359)
++...+.|++.+-+.-+++|. ...|.+|-.+.+..+++.+. ....|.+++ ...+.+...++++.+.++|+|
T Consensus 77 i~~a~~~g~~~i~i~~~~S~~~~~~~~~~~~~e~~~~~~~~i~~a~~~G~~v~~~~eda~r~~~~~l~~~~~~~~~~g~~ 156 (262)
T cd07948 77 ARIAVETGVDGVDLVFGTSPFLREASHGKSITEIIESAVEVIEFVKSKGIEVRFSSEDSFRSDLVDLLRVYRAVDKLGVN 156 (262)
T ss_pred HHHHHHcCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeeCCCCHHHHHHHHHHHHHcCCC
Confidence 666677899999998888874 45677886666666666543 235665553 445688999999999999999
Q ss_pred EEEEcCCCCCCCCHHHHHHHHHHHHhcC
Q 018253 156 AALHINPYYGKTSLEGLISHFDSVLSMG 183 (359)
Q Consensus 156 av~v~pP~y~~~s~~~l~~yf~~Ia~a~ 183 (359)
.+.+. =.....+++++.++++.+.+..
T Consensus 157 ~i~l~-Dt~G~~~P~~v~~~~~~~~~~~ 183 (262)
T cd07948 157 RVGIA-DTVGIATPRQVYELVRTLRGVV 183 (262)
T ss_pred EEEEC-CcCCCCCHHHHHHHHHHHHHhc
Confidence 76554 4455678899999999998773
No 115
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=92.73 E-value=5.7 Score=39.21 Aligned_cols=87 Identities=14% Similarity=0.134 Sum_probs=57.4
Q ss_pred CCCHHHHHHHHHH-------HHHCCCCEEEEccCccC----------------cCCCCHHHHHHHHHHHHHh----hCCC
Q 018253 75 RFDLEAYDDLVNM-------QIVNGAEGMIVGGTTGE----------------GQLMSWDEHIMLIGHTVNC----FGAS 127 (359)
Q Consensus 75 ~ID~~~l~~li~~-------li~~Gv~Gl~v~GstGE----------------~~~LT~~Er~~li~~~v~~----~~gr 127 (359)
++..+.+.++++. ..++|.|||-+.+.-|- +-- |.+.|.+++..+++. ++.+
T Consensus 130 ~mt~~eI~~ii~~f~~AA~ra~~aGfDgVeih~ahGyLl~qFlsp~~N~RtD~yGG-slenR~r~~~eiv~~ir~~vg~~ 208 (343)
T cd04734 130 AMEEEDIEEIIAAFADAARRCQAGGLDGVELQAAHGHLIDQFLSPLTNRRTDEYGG-SLENRMRFLLEVLAAVRAAVGPD 208 (343)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEccccchHHHHhhCCCcCCCCCcCCC-CHHHHhHHHHHHHHHHHHHcCCC
Confidence 3566666665554 45699999999885442 211 567776666665554 4444
Q ss_pred cEEEEecC-------CCCHHHHHHHHHHHHhCC-CCEEEEcCC
Q 018253 128 VKVIGNTG-------SNSTREAIHATEQGFAVG-MHAALHINP 162 (359)
Q Consensus 128 vpViagvg-------~~st~~ai~la~~a~~~G-adav~v~pP 162 (359)
.+|.+=++ +.+.+|++++++..+++| +|.+-+...
T Consensus 209 ~~v~iRl~~~~~~~~G~~~~e~~~~~~~l~~~G~vd~i~vs~g 251 (343)
T cd04734 209 FIVGIRISGDEDTEGGLSPDEALEIAARLAAEGLIDYVNVSAG 251 (343)
T ss_pred CeEEEEeehhhccCCCCCHHHHHHHHHHHHhcCCCCEEEeCCC
Confidence 45443233 256899999999999998 899988543
No 116
>TIGR00676 fadh2 5,10-methylenetetrahydrofolate reductase, prokaryotic form. This protein is an FAD-containing flavoprotein.
Probab=92.73 E-value=2.6 Score=40.22 Aligned_cols=128 Identities=13% Similarity=0.139 Sum_probs=77.5
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEc-cCcc--C--cCCCCHHHHHHHHHHHHHhhCCCcEEEEecC------CCCHHHHHH
Q 018253 76 FDLEAYDDLVNMQIVNGAEGMIVG-GTTG--E--GQLMSWDEHIMLIGHTVNCFGASVKVIGNTG------SNSTREAIH 144 (359)
Q Consensus 76 ID~~~l~~li~~li~~Gv~Gl~v~-GstG--E--~~~LT~~Er~~li~~~v~~~~grvpViagvg------~~st~~ai~ 144 (359)
.|...+...+..+.+.|++.++++ |-.. + ...-..+.=.+|++...+. .++..|-+... ..+.++-++
T Consensus 70 ~n~~~l~~~L~~~~~~Gi~nvL~l~GD~~~~~~~~~~~~f~~a~~Li~~i~~~-~~~f~ig~a~~Peghp~~~~~~~~~~ 148 (272)
T TIGR00676 70 ATREEIREILREYRELGIRHILALRGDPPKGEGTPTPGGFNYASELVEFIRNE-FGDFDIGVAAYPEKHPEAPNLEEDIE 148 (272)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEeCCCCCCCCCCCCCCCCCCHHHHHHHHHHh-cCCeeEEEEeCCCCCCCCCCHHHHHH
Confidence 589999999999999999998844 4221 1 1112222356677766554 34433222221 234556667
Q ss_pred HHHHHHhCCCCEEEEcCCCCCCCCHHHHHHHHHHHHhc---CCeEEEeCC-----------CCCCCCCCHHHHHHHhc
Q 018253 145 ATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSM---GPTIIYNVP-----------SRTGQDIPPRVIHTMAQ 208 (359)
Q Consensus 145 la~~a~~~Gadav~v~pP~y~~~s~~~l~~yf~~Ia~a---~PiiiYn~P-----------~~tg~~ls~e~l~~La~ 208 (359)
..++=.++||| .+++-|.| +.+.+.+|.+.+.+. .||+.==.| ...|+.++.+++++|.+
T Consensus 149 ~L~~K~~aGA~-f~iTQ~~f---d~~~~~~~~~~~~~~gi~~PIi~Gi~p~~s~k~~~~~~~~~Gv~vP~~~~~~l~~ 222 (272)
T TIGR00676 149 NLKRKVDAGAD-YAITQLFF---DNDDYYRFVDRCRAAGIDVPIIPGIMPITNFKQLLRFAERCGAEIPAWLVKRLEK 222 (272)
T ss_pred HHHHHHHcCCC-eEeecccc---CHHHHHHHHHHHHHcCCCCCEecccCCcCCHHHHHHHHhccCCCCCHHHHHHHHh
Confidence 66666788999 55555777 567777777776554 465421111 14577777777777764
No 117
>PLN02979 glycolate oxidase
Probab=92.70 E-value=0.89 Score=45.29 Aligned_cols=95 Identities=15% Similarity=0.157 Sum_probs=65.1
Q ss_pred HHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCCCHHHHHHHHHHHHhCCCCEEEEcCC
Q 018253 83 DLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINP 162 (359)
Q Consensus 83 ~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~st~~ai~la~~a~~~Gadav~v~pP 162 (359)
+.+..+++.|++||.+.|.-|-...-...- ..++..+++.+++++|||+.=|=.+-.+.+ .|..+|||++++--|
T Consensus 235 ~dA~~a~~~Gvd~I~VsnhGGrqld~~p~t-~~~L~ei~~~~~~~~~Vi~dGGIr~G~Di~----KALALGAdaV~iGrp 309 (366)
T PLN02979 235 EDARIAIQAGAAGIIVSNHGARQLDYVPAT-ISALEEVVKATQGRIPVFLDGGVRRGTDVF----KALALGASGIFIGRP 309 (366)
T ss_pred HHHHHHHhcCCCEEEECCCCcCCCCCchhH-HHHHHHHHHHhCCCCeEEEeCCcCcHHHHH----HHHHcCCCEEEEcHH
Confidence 345678899999999999988653322221 445555556677889999844422233322 245689999999999
Q ss_pred CCCC---CCHHHHHHHHHHHHhc
Q 018253 163 YYGK---TSLEGLISHFDSVLSM 182 (359)
Q Consensus 163 ~y~~---~s~~~l~~yf~~Ia~a 182 (359)
+.+. ..++++.+.++.+.+.
T Consensus 310 ~L~~la~~G~~Gv~~~l~~l~~E 332 (366)
T PLN02979 310 VVFSLAAEGEAGVRKVLQMLRDE 332 (366)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHH
Confidence 8753 4678888888877765
No 118
>PRK11197 lldD L-lactate dehydrogenase; Provisional
Probab=92.67 E-value=0.55 Score=47.15 Aligned_cols=92 Identities=12% Similarity=0.203 Sum_probs=62.9
Q ss_pred HHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCCCHHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 018253 86 NMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYYG 165 (359)
Q Consensus 86 ~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~st~~ai~la~~a~~~Gadav~v~pP~y~ 165 (359)
..+++.|+++|.|.|..|-...-...- ...+..+++.+++++|||+.=|=.+-.+.+ .|..+|||+|++--|+.+
T Consensus 260 ~~a~~~Gvd~I~Vs~hGGr~~d~~~~t-~~~L~~i~~a~~~~~~vi~dGGIr~g~Di~----KALaLGA~~V~iGr~~l~ 334 (381)
T PRK11197 260 RDAVRFGADGIVVSNHGGRQLDGVLSS-ARALPAIADAVKGDITILADSGIRNGLDVV----RMIALGADTVLLGRAFVY 334 (381)
T ss_pred HHHHhCCCCEEEECCCCCCCCCCcccH-HHHHHHHHHHhcCCCeEEeeCCcCcHHHHH----HHHHcCcCceeEhHHHHH
Confidence 367789999999999887643222221 234444455666789999844322333332 345689999999999876
Q ss_pred C---CCHHHHHHHHHHHHhc
Q 018253 166 K---TSLEGLISHFDSVLSM 182 (359)
Q Consensus 166 ~---~s~~~l~~yf~~Ia~a 182 (359)
. ..++++.++++.+.+.
T Consensus 335 ~la~~G~~gv~~~l~~l~~E 354 (381)
T PRK11197 335 ALAAAGQAGVANLLDLIEKE 354 (381)
T ss_pred HHHhccHHHHHHHHHHHHHH
Confidence 4 4789999999888765
No 119
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=92.63 E-value=3.3 Score=38.78 Aligned_cols=114 Identities=14% Similarity=0.178 Sum_probs=64.5
Q ss_pred HHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCCCHHHHHHHHHHHHhCCCCEEEEc
Q 018253 81 YDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHI 160 (359)
Q Consensus 81 l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~st~~ai~la~~a~~~Gadav~v~ 160 (359)
+.++++.+.++|++|+++.. |..||..++++.+.+. .+..+.-+.-.++.+.++..... +.|.-.+|.+
T Consensus 93 ~~~fi~~~~~aG~~giiipD-------l~~ee~~~~~~~~~~~---g~~~i~~i~P~T~~~~i~~i~~~-~~~~vy~~s~ 161 (242)
T cd04724 93 LERFLRDAKEAGVDGLIIPD-------LPPEEAEEFREAAKEY---GLDLIFLVAPTTPDERIKKIAEL-ASGFIYYVSR 161 (242)
T ss_pred HHHHHHHHHHCCCcEEEECC-------CCHHHHHHHHHHHHHc---CCcEEEEeCCCCCHHHHHHHHhh-CCCCEEEEeC
Confidence 57788889999999998863 3456666666665542 23344444444444444433321 3455555666
Q ss_pred CCCCCCCC--HHHHHHHHHHHHhcCCeEEEeCCCCCCCCCC-HHHHHHHhcCC
Q 018253 161 NPYYGKTS--LEGLISHFDSVLSMGPTIIYNVPSRTGQDIP-PRVIHTMAQSP 210 (359)
Q Consensus 161 pP~y~~~s--~~~l~~yf~~Ia~a~PiiiYn~P~~tg~~ls-~e~l~~La~~p 210 (359)
.|.+...+ .+.+.++.+.+.+.. +.|-..|..++ ++.+.++.+..
T Consensus 162 ~g~tG~~~~~~~~~~~~i~~lr~~~-----~~pI~vggGI~~~e~~~~~~~~A 209 (242)
T cd04724 162 TGVTGARTELPDDLKELIKRIRKYT-----DLPIAVGFGISTPEQAAEVAKYA 209 (242)
T ss_pred CCCCCCccCCChhHHHHHHHHHhcC-----CCcEEEEccCCCHHHHHHHHccC
Confidence 67664322 355667777776642 22222344566 55777776543
No 120
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=92.56 E-value=1.2 Score=42.06 Aligned_cols=114 Identities=15% Similarity=0.113 Sum_probs=87.4
Q ss_pred cCCceEEeeecCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCC
Q 018253 58 KALRLITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSN 137 (359)
Q Consensus 58 ~~~Gi~~al~TPF~~dg~ID~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~ 137 (359)
+-.|+.+.. .+- ..++.|.+.+.++++.+.+.|++.|.+.=|+| .+++++-.++++.+.+..+ +|+=++. ++
T Consensus 120 ~~~G~~v~~-~~~-~~~~~~~~~~~~~~~~~~~~G~~~i~l~DT~G---~~~P~~v~~lv~~l~~~~~--~~l~~H~-Hn 191 (259)
T cd07939 120 KDRGLFVSV-GAE-DASRADPDFLIEFAEVAQEAGADRLRFADTVG---ILDPFTTYELIRRLRAATD--LPLEFHA-HN 191 (259)
T ss_pred HHCCCeEEE-eec-cCCCCCHHHHHHHHHHHHHCCCCEEEeCCCCC---CCCHHHHHHHHHHHHHhcC--CeEEEEe-cC
Confidence 345765443 332 35679999999999999999999999999999 7899999999999888764 6765544 67
Q ss_pred CHHHHHHHHHHHHhCCCCEEEEcCCCCC----CCCHHHHHHHHHHH
Q 018253 138 STREAIHATEQGFAVGMHAALHINPYYG----KTSLEGLISHFDSV 179 (359)
Q Consensus 138 st~~ai~la~~a~~~Gadav~v~pP~y~----~~s~~~l~~yf~~I 179 (359)
+..-+...+..|.++|++.+=..---+. ...-|+++.+++..
T Consensus 192 ~~Gla~An~laAi~aG~~~vd~s~~G~G~~aGN~~tE~lv~~l~~~ 237 (259)
T cd07939 192 DLGLATANTLAAVRAGATHVSVTVNGLGERAGNAALEEVVMALKHL 237 (259)
T ss_pred CCChHHHHHHHHHHhCCCEEEEecccccccccCcCHHHHHHHHHHh
Confidence 8888999999999999998755543332 24567777777654
No 121
>PRK14024 phosphoribosyl isomerase A; Provisional
Probab=92.56 E-value=0.67 Score=43.39 Aligned_cols=93 Identities=15% Similarity=0.182 Sum_probs=69.6
Q ss_pred HHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCCCHHHHHHHHHHHHhCCCCEEEE
Q 018253 80 AYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALH 159 (359)
Q Consensus 80 ~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~st~~ai~la~~a~~~Gadav~v 159 (359)
.+..+++.+.+.|++.+++.+-+-++..--. -.++++.+.+.+ ++|||++=+-.|.++..++.+ ..+.|+|++|+
T Consensus 147 ~~~~~~~~l~~~G~~~iiv~~~~~~g~~~G~--d~~~i~~i~~~~--~ipviasGGi~s~~D~~~l~~-~~~~GvdgV~i 221 (241)
T PRK14024 147 DLWEVLERLDSAGCSRYVVTDVTKDGTLTGP--NLELLREVCART--DAPVVASGGVSSLDDLRALAE-LVPLGVEGAIV 221 (241)
T ss_pred cHHHHHHHHHhcCCCEEEEEeecCCCCccCC--CHHHHHHHHhhC--CCCEEEeCCCCCHHHHHHHhh-hccCCccEEEE
Confidence 4556677778999999999999988766443 466667777654 589999877778888776643 23579999999
Q ss_pred cCCCCC-CCCHHHHHHHHH
Q 018253 160 INPYYG-KTSLEGLISHFD 177 (359)
Q Consensus 160 ~pP~y~-~~s~~~l~~yf~ 177 (359)
-.-.|. +.+.+++.++++
T Consensus 222 gra~~~g~~~~~~~~~~~~ 240 (241)
T PRK14024 222 GKALYAGAFTLPEALAVVR 240 (241)
T ss_pred eHHHHcCCCCHHHHHHHhc
Confidence 988774 467777766643
No 122
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=92.50 E-value=8.2 Score=35.15 Aligned_cols=161 Identities=14% Similarity=0.031 Sum_probs=88.9
Q ss_pred CHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCCCHHHHHHHHHHHHhCCCCE
Q 018253 77 DLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHA 156 (359)
Q Consensus 77 D~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~st~~ai~la~~a~~~Gada 156 (359)
+.+...++.+...+.|+++|-+.---+-+. =+. +.++.+.+.+ ++||+++-+-.+. +.++.+.++|||+
T Consensus 29 ~~~~~~~~A~~~~~~GA~~l~v~~~~~~~~-g~~----~~~~~i~~~v--~iPi~~~~~i~~~----~~v~~~~~~Gad~ 97 (217)
T cd00331 29 EDFDPVEIAKAYEKAGAAAISVLTEPKYFQ-GSL----EDLRAVREAV--SLPVLRKDFIIDP----YQIYEARAAGADA 97 (217)
T ss_pred CCCCHHHHHHHHHHcCCCEEEEEeCccccC-CCH----HHHHHHHHhc--CCCEEECCeecCH----HHHHHHHHcCCCE
Confidence 344566777778889999998863222111 011 2344444433 6899976432222 3688899999999
Q ss_pred EEEcCCCCCCCCHHHHHHHHHHHHhc-C-CeEEEeCCCCCCCCCCHHHHHHHhcC-CCeEEEeccCc-----hh----hH
Q 018253 157 ALHINPYYGKTSLEGLISHFDSVLSM-G-PTIIYNVPSRTGQDIPPRVIHTMAQS-PNLAGVKECVG-----ND----RV 224 (359)
Q Consensus 157 v~v~pP~y~~~s~~~l~~yf~~Ia~a-~-PiiiYn~P~~tg~~ls~e~l~~La~~-pnivGiK~ss~-----d~----~l 224 (359)
+.+..+... .+.+.++++..... + +++..+ +.+.+.+..+. ..++|+=...+ +. ++
T Consensus 98 v~l~~~~~~---~~~~~~~~~~~~~~g~~~~v~v~---------~~~e~~~~~~~g~~~i~~t~~~~~~~~~~~~~~~~l 165 (217)
T cd00331 98 VLLIVAALD---DEQLKELYELARELGMEVLVEVH---------DEEELERALALGAKIIGINNRDLKTFEVDLNTTERL 165 (217)
T ss_pred EEEeeccCC---HHHHHHHHHHHHHcCCeEEEEEC---------CHHHHHHHHHcCCCEEEEeCCCccccCcCHHHHHHH
Confidence 999877652 35555555544332 2 222222 45556666653 45666542111 11 22
Q ss_pred hhhhCCceEEEe--cCC--chhhhhhhhcCCceeecccccc
Q 018253 225 EHYTGNGIVVWS--GND--DQCHDARWNHGATGVISVTSNL 261 (359)
Q Consensus 225 ~~~~~~~~~v~~--G~d--~~~~~~~l~~Ga~G~is~~an~ 261 (359)
.+....+..++. |-. +.+ ...+.+|++|++.+.+-+
T Consensus 166 ~~~~~~~~pvia~gGI~s~edi-~~~~~~Ga~gvivGsai~ 205 (217)
T cd00331 166 APLIPKDVILVSESGISTPEDV-KRLAEAGADAVLIGESLM 205 (217)
T ss_pred HHhCCCCCEEEEEcCCCCHHHH-HHHHHcCCCEEEECHHHc
Confidence 222212344443 332 233 344788999999887644
No 123
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=92.49 E-value=3.1 Score=40.49 Aligned_cols=84 Identities=14% Similarity=0.118 Sum_probs=56.1
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEccCcc------C--cC-CC-CHHHHHHHHHHHHHhhCCCcEEEEecC---CCCHHHH
Q 018253 76 FDLEAYDDLVNMQIVNGAEGMIVGGTTG------E--GQ-LM-SWDEHIMLIGHTVNCFGASVKVIGNTG---SNSTREA 142 (359)
Q Consensus 76 ID~~~l~~li~~li~~Gv~Gl~v~GstG------E--~~-~L-T~~Er~~li~~~v~~~~grvpViagvg---~~st~~a 142 (359)
-|.+.+.+.++.+.+.|++||=++++.- + +. .+ ..+--.++++.+++.++ +||.+-+. ..+..+.
T Consensus 72 ~~~~~~~~aa~~~~~~G~d~IelN~gcP~~~~~~~~~Gs~l~~~~~~~~ei~~~vr~~~~--~pv~vKir~g~~~~~~~~ 149 (319)
T TIGR00737 72 SDPDTMAEAAKINEELGADIIDINMGCPVPKITKKGAGSALLRDPDLIGKIVKAVVDAVD--IPVTVKIRIGWDDAHINA 149 (319)
T ss_pred CCHHHHHHHHHHHHhCCCCEEEEECCCCHHHhcCCCccchHhCCHHHHHHHHHHHHhhcC--CCEEEEEEcccCCCcchH
Confidence 3668888999988889999998865531 1 11 12 23444455666555543 78877542 1223467
Q ss_pred HHHHHHHHhCCCCEEEEcC
Q 018253 143 IHATEQGFAVGMHAALHIN 161 (359)
Q Consensus 143 i~la~~a~~~Gadav~v~p 161 (359)
+++++.+++.|+|++.+..
T Consensus 150 ~~~a~~l~~~G~d~i~vh~ 168 (319)
T TIGR00737 150 VEAARIAEDAGAQAVTLHG 168 (319)
T ss_pred HHHHHHHHHhCCCEEEEEc
Confidence 8999999999999998753
No 124
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=92.48 E-value=1.2 Score=43.98 Aligned_cols=85 Identities=9% Similarity=-0.026 Sum_probs=72.5
Q ss_pred CCCCHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCCCHHHHHHHHHHHHhCC
Q 018253 74 GRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVG 153 (359)
Q Consensus 74 g~ID~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~st~~ai~la~~a~~~G 153 (359)
+..+.+.+.++++.+.+.|++.|++.=|.| .|++++-.++++.+.+..++.+||=++. +++..-++..+..|.++|
T Consensus 139 ~~~~~e~l~~~a~~~~~~Ga~~i~i~DT~G---~~~P~~v~~~v~~l~~~l~~~i~ig~H~-HnnlGla~ANslaAi~aG 214 (337)
T PRK08195 139 HMAPPEKLAEQAKLMESYGAQCVYVVDSAG---ALLPEDVRDRVRALRAALKPDTQVGFHG-HNNLGLGVANSLAAVEAG 214 (337)
T ss_pred cCCCHHHHHHHHHHHHhCCCCEEEeCCCCC---CCCHHHHHHHHHHHHHhcCCCCeEEEEe-CCCcchHHHHHHHHHHhC
Confidence 568999999999999999999999999999 7899999999999998886677776554 678889999999999999
Q ss_pred CCEEEEcCC
Q 018253 154 MHAALHINP 162 (359)
Q Consensus 154 adav~v~pP 162 (359)
|+.+=..--
T Consensus 215 a~~iD~Sl~ 223 (337)
T PRK08195 215 ATRIDGSLA 223 (337)
T ss_pred CCEEEecCh
Confidence 997755533
No 125
>cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors.
Probab=92.45 E-value=0.73 Score=45.18 Aligned_cols=86 Identities=17% Similarity=0.215 Sum_probs=59.9
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEccCccCcC------------CCCH-HHH---HHHHHHHHHhhCCCcEEEEecCCCCH
Q 018253 76 FDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQ------------LMSW-DEH---IMLIGHTVNCFGASVKVIGNTGSNST 139 (359)
Q Consensus 76 ID~~~l~~li~~li~~Gv~Gl~v~GstGE~~------------~LT~-~Er---~~li~~~v~~~~grvpViagvg~~st 139 (359)
.+.+.+..+++.+.++|++||.+.+++.+.. -+|- ..+ .+.+..+.+.+++++||++.=|=.+.
T Consensus 213 ~~~~~~~~ia~~l~~aGad~I~~~n~~~~~~~~~~~~~~~~~gG~sG~~~~~~~l~~v~~l~~~~~~~ipIi~~GGI~t~ 292 (327)
T cd04738 213 LSDEELEDIADVALEHGVDGIIATNTTISRPGLLRSPLANETGGLSGAPLKERSTEVLRELYKLTGGKIPIIGVGGISSG 292 (327)
T ss_pred CCHHHHHHHHHHHHHcCCcEEEEECCcccccccccccccCCCCccCChhhhHHHHHHHHHHHHHhCCCCcEEEECCCCCH
Confidence 3456788899999999999999887654221 1221 222 46666777777777898864334467
Q ss_pred HHHHHHHHHHHhCCCCEEEEcCCCCC
Q 018253 140 REAIHATEQGFAVGMHAALHINPYYG 165 (359)
Q Consensus 140 ~~ai~la~~a~~~Gadav~v~pP~y~ 165 (359)
++++++.. +|||+|++....+.
T Consensus 293 ~da~e~l~----aGAd~V~vg~~~~~ 314 (327)
T cd04738 293 EDAYEKIR----AGASLVQLYTGLVY 314 (327)
T ss_pred HHHHHHHH----cCCCHHhccHHHHh
Confidence 77777764 79999999988764
No 126
>cd02812 PcrB_like PcrB_like proteins. One member of this family, a protein from Archaeoglobus fulgidus, has been characterized as a (S)-3-O-geranylgeranylglyceryl phosphate synthase (AfGGGPS). AfGGGPS catalyzes the formation of an ether linkage between sn-glycerol-1-phosphate (G1P) and geranylgeranyl diphosphate (GGPP), the committed step in archaeal lipid biosynthesis. Therefore, it has been proposed that PcrB-like proteins are either prenyltransferases or are involved in lipoteichoic acid biosynthesis although the exact function is still unknown.
Probab=92.43 E-value=6.6 Score=36.45 Aligned_cols=181 Identities=20% Similarity=0.212 Sum_probs=97.4
Q ss_pred cCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCCCHHHHHHHHH
Q 018253 68 TPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATE 147 (359)
Q Consensus 68 TPF~~dg~ID~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~st~~ai~la~ 147 (359)
|=+|+|-.++.+.+.+. +.+.|.|+|+++||+|.. -+.++-.++++.. .. .+||+.=.++.+.-
T Consensus 4 ~~iDP~K~~~~~~~~~~---~~~~gtdai~vGGS~~v~--~~~~~~~~~ik~~---~~-~~Pvilfp~~~~~i------- 67 (219)
T cd02812 4 TKLDPDKELVDEEIAKL---AEESGTDAIMVGGSDGVS--STLDNVVRLIKRI---RR-PVPVILFPSNPEAV------- 67 (219)
T ss_pred eeeCCCCCCCHHHHHHH---HHhcCCCEEEECCccchh--hhHHHHHHHHHHh---cC-CCCEEEeCCCcccc-------
Confidence 33455555665554433 334999999999999986 4555555555543 22 58998766653211
Q ss_pred HHHhCCCCEEEEcC------CCCCCCCHHHHHHHHHHHH--hc-CC--eEEEeCCCC----C--CCCCCHHHHHHHh---
Q 018253 148 QGFAVGMHAALHIN------PYYGKTSLEGLISHFDSVL--SM-GP--TIIYNVPSR----T--GQDIPPRVIHTMA--- 207 (359)
Q Consensus 148 ~a~~~Gadav~v~p------P~y~~~s~~~l~~yf~~Ia--~a-~P--iiiYn~P~~----t--g~~ls~e~l~~La--- 207 (359)
.-|||++++.. |+|.-..+-+-...+..+. .. .| -++-|.-.. + ....+++.+..-+
T Consensus 68 ---~~~aDa~l~~svlns~n~~~i~g~~~~~~~~~~~~~~~~e~i~~gYiv~~~~~~v~~v~~a~~~~~~e~~~ayA~aa 144 (219)
T cd02812 68 ---SPGADAYLFPSVLNSGDPYWIIGAQAEAAPEVGKIIPWLELIPEGYLVLNPDSTVARVTGAKTDLKPEDAAAYALAA 144 (219)
T ss_pred ---CcCCCEEEEEeeecCCCchHHHHHHHHHHHHhccccccccccceEEEEECCCCceeeeeccCcCCCHHHHHHHHHHH
Confidence 46799998864 5664433333333333311 11 45 233333211 1 2247788777654
Q ss_pred c-C-CCeEEEeccCch--hh----HhhhhCCceEEEecCC----chhhhhhhhcCCceeeccccccc-HHHHHHH
Q 018253 208 Q-S-PNLAGVKECVGN--DR----VEHYTGNGIVVWSGND----DQCHDARWNHGATGVISVTSNLV-PGMMREL 269 (359)
Q Consensus 208 ~-~-pnivGiK~ss~d--~~----l~~~~~~~~~v~~G~d----~~~~~~~l~~Ga~G~is~~an~~-P~l~~~l 269 (359)
+ . =.++.+-.|... .. +++... +..++.|.. +.. ...+.+|+++++.|++-+- |+.+.++
T Consensus 145 e~~g~~ivyLe~SG~~~~~e~I~~v~~~~~-~~pl~vGGGIrs~e~a-~~l~~aGAD~VVVGsai~~~p~~~~~~ 217 (219)
T cd02812 145 EYLGMPIVYLEYSGAYGPPEVVRAVKKVLG-DTPLIVGGGIRSGEQA-KEMAEAGADTIVVGNIVEEDPNAALET 217 (219)
T ss_pred HHcCCeEEEeCCCCCcCCHHHHHHHHHhcC-CCCEEEeCCCCCHHHH-HHHHHcCCCEEEECchhhCCHHHHHHH
Confidence 3 2 346655532222 22 233321 344555542 233 3446679999998876554 4554443
No 127
>PLN02826 dihydroorotate dehydrogenase
Probab=92.40 E-value=0.87 Score=46.17 Aligned_cols=87 Identities=17% Similarity=0.245 Sum_probs=61.8
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEccCcc-------------CcCCCCH----HHHHHHHHHHHHhhCCCcEEEEecCCCC
Q 018253 76 FDLEAYDDLVNMQIVNGAEGMIVGGTTG-------------EGQLMSW----DEHIMLIGHTVNCFGASVKVIGNTGSNS 138 (359)
Q Consensus 76 ID~~~l~~li~~li~~Gv~Gl~v~GstG-------------E~~~LT~----~Er~~li~~~v~~~~grvpViagvg~~s 138 (359)
++.+.+..+++.+.+.|++||++.-||- |.--||= .-=.+++..+.+.+++++|||+-=|=.+
T Consensus 273 l~~~di~~ia~~a~~~G~dGIi~~NTt~~r~~dl~~~~~~~~~GGlSG~pl~~~sl~~v~~l~~~~~~~ipIIgvGGI~s 352 (409)
T PLN02826 273 LSKEDLEDIAAVALALGIDGLIISNTTISRPDSVLGHPHADEAGGLSGKPLFDLSTEVLREMYRLTRGKIPLVGCGGVSS 352 (409)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEEcccCcCccchhcccccccCCCcCCccccHHHHHHHHHHHHHhCCCCcEEEECCCCC
Confidence 4455788889999999999998876552 1111231 1125566777777888899886555557
Q ss_pred HHHHHHHHHHHHhCCCCEEEEcCCCCCC
Q 018253 139 TREAIHATEQGFAVGMHAALHINPYYGK 166 (359)
Q Consensus 139 t~~ai~la~~a~~~Gadav~v~pP~y~~ 166 (359)
-+++++..+ +||++|.+-..+++.
T Consensus 353 g~Da~e~i~----AGAs~VQv~Ta~~~~ 376 (409)
T PLN02826 353 GEDAYKKIR----AGASLVQLYTAFAYE 376 (409)
T ss_pred HHHHHHHHH----hCCCeeeecHHHHhc
Confidence 888888877 899999998876553
No 128
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=92.39 E-value=1.4 Score=39.54 Aligned_cols=95 Identities=9% Similarity=0.081 Sum_probs=59.9
Q ss_pred HHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCCCHHHHHHHHHHHHhCCCCEEEEcCC
Q 018253 83 DLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINP 162 (359)
Q Consensus 83 ~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~st~~ai~la~~a~~~Gadav~v~pP 162 (359)
..++..++.|++++...++. .++++...+ . +++++.|+. +. +.++.|.+.|+|.+.+. |
T Consensus 67 ~~~~~a~~~Ga~~i~~p~~~-----------~~~~~~~~~-~--~~~~i~gv~--t~----~e~~~A~~~Gad~i~~~-p 125 (190)
T cd00452 67 EQADAAIAAGAQFIVSPGLD-----------PEVVKAANR-A--GIPLLPGVA--TP----TEIMQALELGADIVKLF-P 125 (190)
T ss_pred HHHHHHHHcCCCEEEcCCCC-----------HHHHHHHHH-c--CCcEECCcC--CH----HHHHHHHHCCCCEEEEc-C
Confidence 35667788999999865554 235544433 2 468898887 34 44566678999999973 2
Q ss_pred CCCCCCHHHHHHHHHHHHhcC---CeEEEeCCCCCCCCCCHHHHHHHhcCC
Q 018253 163 YYGKTSLEGLISHFDSVLSMG---PTIIYNVPSRTGQDIPPRVIHTMAQSP 210 (359)
Q Consensus 163 ~y~~~s~~~l~~yf~~Ia~a~---PiiiYn~P~~tg~~ls~e~l~~La~~p 210 (359)
.+.. ..+|++.+.... |++. +| .++++.+.++.+.+
T Consensus 126 ----~~~~-g~~~~~~l~~~~~~~p~~a------~G-GI~~~n~~~~~~~G 164 (190)
T cd00452 126 ----AEAV-GPAYIKALKGPFPQVRFMP------TG-GVSLDNAAEWLAAG 164 (190)
T ss_pred ----Cccc-CHHHHHHHHhhCCCCeEEE------eC-CCCHHHHHHHHHCC
Confidence 1222 466777776543 3332 23 46788888887654
No 129
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=92.37 E-value=2.8 Score=41.97 Aligned_cols=104 Identities=10% Similarity=0.004 Sum_probs=73.1
Q ss_pred HHHHHHHCCCCEEEEccCccCc-----CCCCHHHHHHHHHHHHHhhCC-CcEEEEe---cCCCCHHHHHHHHHHHHhCCC
Q 018253 84 LVNMQIVNGAEGMIVGGTTGEG-----QLMSWDEHIMLIGHTVNCFGA-SVKVIGN---TGSNSTREAIHATEQGFAVGM 154 (359)
Q Consensus 84 li~~li~~Gv~Gl~v~GstGE~-----~~LT~~Er~~li~~~v~~~~g-rvpViag---vg~~st~~ai~la~~a~~~Ga 154 (359)
-++..+++|++.+-+..++++. ..+|.+|-.+.+..+++.+.. ...|.++ .+..+.+..+++++.+.++|+
T Consensus 80 di~~a~~~g~~~i~i~~~~Sd~h~~~~~~~s~~~~l~~~~~~v~~a~~~G~~v~~~~ed~~r~~~~~l~~~~~~~~~~Ga 159 (378)
T PRK11858 80 DIDASIDCGVDAVHIFIATSDIHIKHKLKKTREEVLERMVEAVEYAKDHGLYVSFSAEDASRTDLDFLIEFAKAAEEAGA 159 (378)
T ss_pred HHHHHHhCCcCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEeccCCCCCHHHHHHHHHHHHhCCC
Confidence 3666778899998888888885 467778777766666665431 2345444 344578888999999999999
Q ss_pred CEEEEcCCCCCCCCHHHHHHHHHHHHhc--CCeEEE
Q 018253 155 HAALHINPYYGKTSLEGLISHFDSVLSM--GPTIIY 188 (359)
Q Consensus 155 dav~v~pP~y~~~s~~~l~~yf~~Ia~a--~PiiiY 188 (359)
|.+.+.-- ....+++++.+.++.+.+. .|+-++
T Consensus 160 ~~I~l~DT-~G~~~P~~v~~lv~~l~~~~~~~l~~H 194 (378)
T PRK11858 160 DRVRFCDT-VGILDPFTMYELVKELVEAVDIPIEVH 194 (378)
T ss_pred CEEEEecc-CCCCCHHHHHHHHHHHHHhcCCeEEEE
Confidence 87666533 3566788888888888776 455443
No 130
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=92.29 E-value=4.2 Score=39.81 Aligned_cols=84 Identities=19% Similarity=0.188 Sum_probs=59.8
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEccCc----------cCcCCCCHHHHHHHHHHHHHhhCCCcEEEE--ecC-CCCHHHH
Q 018253 76 FDLEAYDDLVNMQIVNGAEGMIVGGTT----------GEGQLMSWDEHIMLIGHTVNCFGASVKVIG--NTG-SNSTREA 142 (359)
Q Consensus 76 ID~~~l~~li~~li~~Gv~Gl~v~Gst----------GE~~~LT~~Er~~li~~~v~~~~grvpVia--gvg-~~st~~a 142 (359)
=|.+.+.+.++.+.+.|+++|=+|-+. |-...-..+.-.++++.+++.+ ++||.+ ..| ..+..++
T Consensus 74 ~~~~~~~~aa~~~~~~g~d~IdlN~gCP~~~v~~~g~Gs~ll~~p~~~~eiv~av~~a~--d~pv~vKiR~G~~~~~~~~ 151 (321)
T PRK10415 74 SDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDLVKSILTEVVNAV--DVPVTLKIRTGWAPEHRNC 151 (321)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEeCCCCHHHHcCCCcccHHhcCHHHHHHHHHHHHHhc--CCceEEEEEccccCCcchH
Confidence 366888888888788999998876652 3334445666778888887766 345544 233 2345689
Q ss_pred HHHHHHHHhCCCCEEEEcC
Q 018253 143 IHATEQGFAVGMHAALHIN 161 (359)
Q Consensus 143 i~la~~a~~~Gadav~v~p 161 (359)
+++++.+++.|+|++.+.+
T Consensus 152 ~~~a~~le~~G~d~i~vh~ 170 (321)
T PRK10415 152 VEIAQLAEDCGIQALTIHG 170 (321)
T ss_pred HHHHHHHHHhCCCEEEEec
Confidence 9999999999999998753
No 131
>cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of in
Probab=92.26 E-value=2.3 Score=40.59 Aligned_cols=101 Identities=13% Similarity=0.083 Sum_probs=68.8
Q ss_pred HHHHHHHHCCCCEEEEccCccCc-----CCCCHHHHHHHHHHHHHhhC-CCcEEEEecC------CCCHHHHHHHHHHHH
Q 018253 83 DLVNMQIVNGAEGMIVGGTTGEG-----QLMSWDEHIMLIGHTVNCFG-ASVKVIGNTG------SNSTREAIHATEQGF 150 (359)
Q Consensus 83 ~li~~li~~Gv~Gl~v~GstGE~-----~~LT~~Er~~li~~~v~~~~-grvpViagvg------~~st~~ai~la~~a~ 150 (359)
+-++..++.|++.+-+..++++. ...|.+|-.+.+...++.+. ....|.++.- ..+.+..+++++.+.
T Consensus 82 ~~~~~a~~~g~~~i~i~~~~sd~~~~~~~~~~~~~~~~~~~~~i~~ak~~G~~v~~~~~~~~d~~~~~~~~~~~~~~~~~ 161 (273)
T cd07941 82 PNLQALLEAGTPVVTIFGKSWDLHVTEALGTTLEENLAMIRDSVAYLKSHGREVIFDAEHFFDGYKANPEYALATLKAAA 161 (273)
T ss_pred HHHHHHHhCCCCEEEEEEcCCHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCeEEEeEEeccccCCCCHHHHHHHHHHHH
Confidence 44666788999999988888765 55676776666666666543 1235544211 235677788888888
Q ss_pred hCCCCEEEEcCCCCCCCCHHHHHHHHHHHHhcCC
Q 018253 151 AVGMHAALHINPYYGKTSLEGLISHFDSVLSMGP 184 (359)
Q Consensus 151 ~~Gadav~v~pP~y~~~s~~~l~~yf~~Ia~a~P 184 (359)
++|+|.+.+. =.+...+++++.++++.+.+..|
T Consensus 162 ~~g~~~i~l~-DT~G~~~P~~v~~lv~~l~~~~~ 194 (273)
T cd07941 162 EAGADWLVLC-DTNGGTLPHEIAEIVKEVRERLP 194 (273)
T ss_pred hCCCCEEEEe-cCCCCCCHHHHHHHHHHHHHhCC
Confidence 8898876543 44556678888888888877633
No 132
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=92.22 E-value=1.6 Score=42.11 Aligned_cols=87 Identities=11% Similarity=0.110 Sum_probs=67.4
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEccCc---------cCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCCCHHHHHHHH
Q 018253 76 FDLEAYDDLVNMQIVNGAEGMIVGGTT---------GEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHAT 146 (359)
Q Consensus 76 ID~~~l~~li~~li~~Gv~Gl~v~Gst---------GE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~st~~ai~la 146 (359)
-|.+.+.+.++.+.+.|+++|=++-+. |....-..+.-.++++.+.+.+ ++||++=+.. ...+..+++
T Consensus 110 ~~~~~~~~~a~~~~~~gad~ielN~sCP~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~--~~Pv~vKl~~-~~~~~~~~a 186 (299)
T cd02940 110 YNKEDWTELAKLVEEAGADALELNFSCPHGMPERGMGAAVGQDPELVEEICRWVREAV--KIPVIAKLTP-NITDIREIA 186 (299)
T ss_pred CCHHHHHHHHHHHHhcCCCEEEEECCCCCCCCCCCCchhhccCHHHHHHHHHHHHHhc--CCCeEEECCC-CchhHHHHH
Confidence 466888999988877899999886553 4444455666777887777655 5899998764 556889999
Q ss_pred HHHHhCCCCEEEEcCCCCC
Q 018253 147 EQGFAVGMHAALHINPYYG 165 (359)
Q Consensus 147 ~~a~~~Gadav~v~pP~y~ 165 (359)
+.+++.|+|++.+++-.+.
T Consensus 187 ~~~~~~Gadgi~~~Nt~~~ 205 (299)
T cd02940 187 RAAKEGGADGVSAINTVNS 205 (299)
T ss_pred HHHHHcCCCEEEEeccccc
Confidence 9999999999999887654
No 133
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=92.12 E-value=3.8 Score=38.85 Aligned_cols=116 Identities=17% Similarity=0.129 Sum_probs=88.6
Q ss_pred CCceEEeeecCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCC-CcEEEEecCCC
Q 018253 59 ALRLITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGA-SVKVIGNTGSN 137 (359)
Q Consensus 59 ~~Gi~~al~TPF~~dg~ID~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~g-rvpViagvg~~ 137 (359)
-.|+-.. +++- ..++.|.+-+.++++.+.+.|++.|.+.=|+|- +++++-.++++.+.+..+. ++|+-++. ++
T Consensus 125 ~~G~~v~-~~~~-~~~~~~~~~~~~~~~~~~~~G~~~i~l~DT~G~---~~P~~v~~lv~~l~~~~~~~~i~l~~H~-Hn 198 (268)
T cd07940 125 SHGLDVE-FSAE-DATRTDLDFLIEVVEAAIEAGATTINIPDTVGY---LTPEEFGELIKKLKENVPNIKVPISVHC-HN 198 (268)
T ss_pred HcCCeEE-Eeee-cCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCC---CCHHHHHHHHHHHHHhCCCCceeEEEEe-cC
Confidence 4564433 3443 355689999999999999999999999999996 8999999999998887753 36665554 67
Q ss_pred CHHHHHHHHHHHHhCCCCEEEEcCCCC----CCCCHHHHHHHHHHHH
Q 018253 138 STREAIHATEQGFAVGMHAALHINPYY----GKTSLEGLISHFDSVL 180 (359)
Q Consensus 138 st~~ai~la~~a~~~Gadav~v~pP~y----~~~s~~~l~~yf~~Ia 180 (359)
+..-++..+..|.++|++.+=..---. ....-|+++.+++...
T Consensus 199 ~~GlA~An~laAi~aG~~~iD~s~~GlG~~aGN~~tE~lv~~L~~~~ 245 (268)
T cd07940 199 DLGLAVANSLAAVEAGARQVECTINGIGERAGNAALEEVVMALKTRY 245 (268)
T ss_pred CcchHHHHHHHHHHhCCCEEEEEeeccccccccccHHHHHHHHHhcc
Confidence 888899999999999999885554333 3356688887776554
No 134
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=91.82 E-value=6 Score=37.81 Aligned_cols=100 Identities=14% Similarity=0.195 Sum_probs=80.1
Q ss_pred CCCCCHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCCCHHHHHHHHHHHHhC
Q 018253 73 DGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAV 152 (359)
Q Consensus 73 dg~ID~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~st~~ai~la~~a~~~ 152 (359)
.+..|.+.+.++++.+.+.|++.|.+.-|+|- +++.+-.++++.+.+..+ ++|+-++. +++.--++..+-.|.++
T Consensus 143 ~~~~~~~~~~~~~~~~~~~Ga~~i~l~DT~G~---~~P~~v~~lv~~l~~~~~-~~~i~~H~-Hnd~GlA~AN~laA~~a 217 (274)
T cd07938 143 EGEVPPERVAEVAERLLDLGCDEISLGDTIGV---ATPAQVRRLLEAVLERFP-DEKLALHF-HDTRGQALANILAALEA 217 (274)
T ss_pred CCCCCHHHHHHHHHHHHHcCCCEEEECCCCCc---cCHHHHHHHHHHHHHHCC-CCeEEEEE-CCCCChHHHHHHHHHHh
Confidence 45789999999999999999999999999997 789999999999888764 47777765 56888899999999999
Q ss_pred CCCEEEEcCC------C----CCCCCHHHHHHHHH
Q 018253 153 GMHAALHINP------Y----YGKTSLEGLISHFD 177 (359)
Q Consensus 153 Gadav~v~pP------~----y~~~s~~~l~~yf~ 177 (359)
||+.+=..-- + -...+-|+++.+++
T Consensus 218 Ga~~id~t~~GlGgcpfa~eraGN~~~E~lv~~L~ 252 (274)
T cd07938 218 GVRRFDSSVGGLGGCPFAPGATGNVATEDLVYMLE 252 (274)
T ss_pred CCCEEEEeccccCCCCCCCCccCCcCHHHHHHHHH
Confidence 9998865432 1 22345566666654
No 135
>PLN02493 probable peroxisomal (S)-2-hydroxy-acid oxidase
Probab=91.80 E-value=1.3 Score=44.25 Aligned_cols=94 Identities=15% Similarity=0.149 Sum_probs=63.6
Q ss_pred HHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCCCHHHHHHHHHHHHhCCCCEEEEcCCC
Q 018253 84 LVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPY 163 (359)
Q Consensus 84 li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~st~~ai~la~~a~~~Gadav~v~pP~ 163 (359)
.+..+++.|++||.+-|.-|-...-... =..++..+++.+.+++|||+.=|=-+-.+.+ .|..+|||++++.-|+
T Consensus 237 dA~~a~~~Gvd~I~VsnhGGrqld~~~~-t~~~L~ei~~av~~~~~vi~dGGIr~G~Dv~----KALALGA~aV~iGr~~ 311 (367)
T PLN02493 237 DARIAIQAGAAGIIVSNHGARQLDYVPA-TISALEEVVKATQGRIPVFLDGGVRRGTDVF----KALALGASGIFIGRPV 311 (367)
T ss_pred HHHHHHHcCCCEEEECCCCCCCCCCchh-HHHHHHHHHHHhCCCCeEEEeCCcCcHHHHH----HHHHcCCCEEEEcHHH
Confidence 3456788999999999998864322211 2455555666677899999843322222222 2456899999999998
Q ss_pred CCC---CCHHHHHHHHHHHHhc
Q 018253 164 YGK---TSLEGLISHFDSVLSM 182 (359)
Q Consensus 164 y~~---~s~~~l~~yf~~Ia~a 182 (359)
.+. ..++++.++++.+.+.
T Consensus 312 l~~l~~~G~~gv~~~l~~l~~e 333 (367)
T PLN02493 312 VFSLAAEGEAGVRKVLQMLRDE 333 (367)
T ss_pred HHHHHhcCHHHHHHHHHHHHHH
Confidence 754 4678888887777654
No 136
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=91.78 E-value=1.5 Score=40.77 Aligned_cols=90 Identities=17% Similarity=0.204 Sum_probs=59.3
Q ss_pred HHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCCCHHHHHHHHHHHHhCCCCEEEEc
Q 018253 81 YDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHI 160 (359)
Q Consensus 81 l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~st~~ai~la~~a~~~Gadav~v~ 160 (359)
...+++.+.+.|++.+.+.+-+-++..--. ..++++.+.+.+ ++||++.=+-.+.+++.+..+. -|+|++++.
T Consensus 151 ~~~~~~~l~~~G~d~i~v~~i~~~g~~~g~--~~~~i~~i~~~~--~~pvia~GGi~~~~di~~~l~~---~g~dgv~vg 223 (243)
T cd04731 151 AVEWAKEVEELGAGEILLTSMDRDGTKKGY--DLELIRAVSSAV--NIPVIASGGAGKPEHFVEAFEE---GGADAALAA 223 (243)
T ss_pred HHHHHHHHHHCCCCEEEEeccCCCCCCCCC--CHHHHHHHHhhC--CCCEEEeCCCCCHHHHHHHHHh---CCCCEEEEe
Confidence 456677788999999999765533221000 234455555544 6899986665667776655442 599999999
Q ss_pred CCCCC-CCCHHHHHHHHH
Q 018253 161 NPYYG-KTSLEGLISHFD 177 (359)
Q Consensus 161 pP~y~-~~s~~~l~~yf~ 177 (359)
.+.|. ..+.+++.++.+
T Consensus 224 ~al~~~~~~~~~~~~~~~ 241 (243)
T cd04731 224 SIFHFGEYTIAELKEYLA 241 (243)
T ss_pred HHHHcCCCCHHHHHHHHh
Confidence 99875 467677666654
No 137
>PLN02495 oxidoreductase, acting on the CH-CH group of donors
Probab=91.68 E-value=1.8 Score=43.52 Aligned_cols=89 Identities=11% Similarity=0.163 Sum_probs=67.0
Q ss_pred CCCCHHHHHHHHHHHHHCCCCEEEEccCc---------cCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCCCHHHHHH
Q 018253 74 GRFDLEAYDDLVNMQIVNGAEGMIVGGTT---------GEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIH 144 (359)
Q Consensus 74 g~ID~~~l~~li~~li~~Gv~Gl~v~Gst---------GE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~st~~ai~ 144 (359)
+.-+.+.+.++++.+.+.|+++|-++=|. |....-+.+.-.++++.+.+.+ ++||++=++- +..+..+
T Consensus 122 ~~~s~~~~~~~a~~~e~~GaD~iELNiSCPn~~~~r~~g~~~gq~~e~~~~i~~~Vk~~~--~iPv~vKLsP-n~t~i~~ 198 (385)
T PLN02495 122 EEYNKDAWEEIIERVEETGVDALEINFSCPHGMPERKMGAAVGQDCDLLEEVCGWINAKA--TVPVWAKMTP-NITDITQ 198 (385)
T ss_pred CCCCHHHHHHHHHHHHhcCCCEEEEECCCCCCCCcCccchhhccCHHHHHHHHHHHHHhh--cCceEEEeCC-ChhhHHH
Confidence 34567889999999888999999986642 2223345555566666665544 6899999885 4556889
Q ss_pred HHHHHHhCCCCEEEEcCCCCC
Q 018253 145 ATEQGFAVGMHAALHINPYYG 165 (359)
Q Consensus 145 la~~a~~~Gadav~v~pP~y~ 165 (359)
.++.+.+.|||++.+++-.+.
T Consensus 199 ia~aa~~~Gadgi~liNT~~~ 219 (385)
T PLN02495 199 PARVALKSGCEGVAAINTIMS 219 (385)
T ss_pred HHHHHHHhCCCEEEEecccCc
Confidence 999999999999999987664
No 138
>PF01702 TGT: Queuine tRNA-ribosyltransferase; InterPro: IPR002616 This is a family of queuine, archaeosine and general tRNA-ribosyltransferases 2.4.2.29 from EC, also known as tRNA-guanine transglycosylase and guanine insertion enzyme. Queuine tRNA-ribosyltransferase modifies tRNAs for asparagine, aspartic acid, histidine and tyrosine with queuine at position 34 and with archaeosine at position 15 in archaeal tRNAs. In bacterial it catalyses the exchange of guanine-34 at the wobble position with 7-aminomethyl-7-deazaguanine, and the addition of a cyclopentenediol moiety to 7-aminomethyl-7-deazaguanine-34 tRNA; giving a hypermodified base queuine in the wobble position [, ]. The aligned region contains a zinc binding motif C-x-C-x2-C-x29-H, and important tRNA and 7-aminomethyl-7deazaguanine binding residues [].; GO: 0008479 queuine tRNA-ribosyltransferase activity, 0006400 tRNA modification, 0008616 queuosine biosynthetic process; PDB: 2ASH_A 1J2B_A 1IT8_A 1IT7_B 1IQ8_A 1R5Y_A 1P0B_A 3BL3_A 3EOS_A 1EFZ_A ....
Probab=91.63 E-value=1.1 Score=41.90 Aligned_cols=78 Identities=18% Similarity=0.240 Sum_probs=54.6
Q ss_pred CCCCHHHHHHHHHHHHHCCCCEEEEcc-CccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCCCHHHHHHHHHHHHhC
Q 018253 74 GRFDLEAYDDLVNMQIVNGAEGMIVGG-TTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAV 152 (359)
Q Consensus 74 g~ID~~~l~~li~~li~~Gv~Gl~v~G-stGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~st~~ai~la~~a~~~ 152 (359)
|..|.+.-.+.++.+.+.+++|+.+.| +.|| +.+|+.++++.+.+..+...|.++ .|..++.+.+.++ .+
T Consensus 63 Gg~~~~lR~~s~~~l~~~~~~g~~igGl~~~~----~~~~~~~~l~~i~~~lp~~~pr~l-~G~~~P~~i~~~v----~~ 133 (238)
T PF01702_consen 63 GGDDKDLRRRSAEELSEDGFDGYAIGGLSPGE----EKEERLEILEAIINNLPPDKPRYL-LGVGTPEEILEAV----YL 133 (238)
T ss_dssp -TT-HHHHHHHHHHHHHSS-SEEEE-SSSSSS----HHHHHHHHHHHHHHCS-TTS-EEE-TTB-SHHHHHHHH----HT
T ss_pred CCCCHHHHHHHHHHHHhcccccccccCCcCCC----CHHHHHHHHHHHHhhCCcccceec-cCCCCHHHHHHHH----Hc
Confidence 777788778888888887899999998 7777 889999999999998888888876 4444677776664 59
Q ss_pred CCCEEEEc
Q 018253 153 GMHAALHI 160 (359)
Q Consensus 153 Gadav~v~ 160 (359)
|+|-+-..
T Consensus 134 GvD~fDs~ 141 (238)
T PF01702_consen 134 GVDLFDSS 141 (238)
T ss_dssp T--EEEES
T ss_pred CCcEEcch
Confidence 99965554
No 139
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=91.60 E-value=4 Score=38.52 Aligned_cols=43 Identities=9% Similarity=-0.015 Sum_probs=25.3
Q ss_pred HHHHHHHHHHhCCCCEEEEcCCCCCCCCHHHHHHHHHHHHhcCC
Q 018253 141 EAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSMGP 184 (359)
Q Consensus 141 ~ai~la~~a~~~Gadav~v~pP~y~~~s~~~l~~yf~~Ia~a~P 184 (359)
...+.++.|++.|. .+.+..|+..+.+.+.+.+.++.+.+..+
T Consensus 111 ~~~~~i~~a~~~G~-~v~~~~~~~~~~~~~~~~~~~~~~~~~G~ 153 (259)
T cd07939 111 QLRRLVGRAKDRGL-FVSVGAEDASRADPDFLIEFAEVAQEAGA 153 (259)
T ss_pred HHHHHHHHHHHCCC-eEEEeeccCCCCCHHHHHHHHHHHHHCCC
Confidence 34455566666665 35555566666666666666666665533
No 140
>PLN02433 uroporphyrinogen decarboxylase
Probab=91.58 E-value=5.9 Score=39.01 Aligned_cols=70 Identities=17% Similarity=0.058 Sum_probs=47.2
Q ss_pred HHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHH----HHHHHhhCC---CcEEEEecCCCCHHHHHHHHHHHHhCCC
Q 018253 82 DDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLI----GHTVNCFGA---SVKVIGNTGSNSTREAIHATEQGFAVGM 154 (359)
Q Consensus 82 ~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li----~~~v~~~~g---rvpViagvg~~st~~ai~la~~a~~~Ga 154 (359)
.++++.++++|++.+.+.-+++. .||.++..+.+ +.+++.++. .+|++.++.+.+ .+.....+.|+
T Consensus 182 ~~~~~~~ieaGa~~i~i~d~~~~--~lsp~~f~ef~~P~~k~i~~~i~~~~~~~~~ilh~cG~~-----~~~~~~~~~~~ 254 (345)
T PLN02433 182 IEYVDYQIDAGAQVVQIFDSWAG--HLSPVDFEEFSKPYLEKIVDEVKARHPDVPLILYANGSG-----GLLERLAGTGV 254 (345)
T ss_pred HHHHHHHHHcCCCEEEEecCccc--cCCHHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEeCCCH-----HHHHHHHhcCC
Confidence 44555667799999988887765 79999988766 344554432 468888765542 33455666788
Q ss_pred CEEE
Q 018253 155 HAAL 158 (359)
Q Consensus 155 dav~ 158 (359)
|++.
T Consensus 255 ~~i~ 258 (345)
T PLN02433 255 DVIG 258 (345)
T ss_pred CEEE
Confidence 8554
No 141
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=91.49 E-value=1.7 Score=42.89 Aligned_cols=84 Identities=11% Similarity=0.003 Sum_probs=67.5
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCCCHHHHHHHHHHHHhCCC
Q 018253 75 RFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGM 154 (359)
Q Consensus 75 ~ID~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~st~~ai~la~~a~~~Ga 154 (359)
..+.+.+.++++.+.+.|++.|++.=|.| .|++++-.++++.+.+..+..+||=++. +++..-++..+..|.++||
T Consensus 139 ~~~~e~l~~~a~~~~~~Ga~~i~i~DT~G---~~~P~~v~~~v~~l~~~l~~~i~ig~H~-HnnlGla~ANslaAi~aGa 214 (333)
T TIGR03217 139 MTPPEKLAEQAKLMESYGADCVYIVDSAG---AMLPDDVRDRVRALKAVLKPETQVGFHA-HHNLSLAVANSIAAIEAGA 214 (333)
T ss_pred CCCHHHHHHHHHHHHhcCCCEEEEccCCC---CCCHHHHHHHHHHHHHhCCCCceEEEEe-CCCCchHHHHHHHHHHhCC
Confidence 56788899999988889999999999988 6888888888888888776567765544 5778888888888889999
Q ss_pred CEEEEcCC
Q 018253 155 HAALHINP 162 (359)
Q Consensus 155 dav~v~pP 162 (359)
+.+=..--
T Consensus 215 ~~iD~Sl~ 222 (333)
T TIGR03217 215 TRIDASLR 222 (333)
T ss_pred CEEEeecc
Confidence 88755433
No 142
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=91.49 E-value=2.2 Score=39.75 Aligned_cols=45 Identities=7% Similarity=-0.009 Sum_probs=23.8
Q ss_pred CCHHHHHHHHHHHHhCCCCEEEEcCCCCCCCCHHHHHHHHHHHHhc
Q 018253 137 NSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSM 182 (359)
Q Consensus 137 ~st~~ai~la~~a~~~Gadav~v~pP~y~~~s~~~l~~yf~~Ia~a 182 (359)
.+.++..++++.+.++|+|.+.+. ......+++++.++++.+.+.
T Consensus 143 ~~~~~l~~~~~~~~~~g~~~i~l~-Dt~G~~~P~~v~~li~~l~~~ 187 (265)
T cd03174 143 TDPEYVLEVAKALEEAGADEISLK-DTVGLATPEEVAELVKALREA 187 (265)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEec-hhcCCcCHHHHHHHHHHHHHh
Confidence 455555555555555665544432 334444555555555555544
No 143
>PF03932 CutC: CutC family; InterPro: IPR005627 Copper transport in Escherichia coli is mediated by the products of at least six genes, cutA, cutB, cutC, cutD, cutE, and cutF. A mutation in one or more of these genes results in an increased copper sensitivity. Members of this family are between 200 and 300 amino acids in length and are found in both eukaryotes and bacteria.; GO: 0005507 copper ion binding, 0055070 copper ion homeostasis; PDB: 2BDQ_A 3IWP_I 1X8C_B 1X7I_A 1TWD_B.
Probab=91.47 E-value=0.5 Score=43.27 Aligned_cols=82 Identities=17% Similarity=0.200 Sum_probs=53.0
Q ss_pred cCCceEEeeecCCCCCCCCCHHHHHHHHH------------------------HHHHCCCCEEEEccCccCcCCCCHHHH
Q 018253 58 KALRLITAIKTPYLPDGRFDLEAYDDLVN------------------------MQIVNGAEGMIVGGTTGEGQLMSWDEH 113 (359)
Q Consensus 58 ~~~Gi~~al~TPF~~dg~ID~~~l~~li~------------------------~li~~Gv~Gl~v~GstGE~~~LT~~Er 113 (359)
+-.|.=..++=.+++||+||.+.++++++ .|++.|++.|+.-|.. -+..|-
T Consensus 82 ~~~GadG~VfG~L~~dg~iD~~~~~~Li~~a~~~~~tFHRAfD~~~d~~~al~~L~~lG~~rVLTSGg~-----~~a~~g 156 (201)
T PF03932_consen 82 RELGADGFVFGALTEDGEIDEEALEELIEAAGGMPVTFHRAFDEVPDPEEALEQLIELGFDRVLTSGGA-----PTALEG 156 (201)
T ss_dssp HHTT-SEEEE--BETTSSB-HHHHHHHHHHHTTSEEEE-GGGGGSSTHHHHHHHHHHHT-SEEEESTTS-----SSTTTC
T ss_pred HHcCCCeeEEEeECCCCCcCHHHHHHHHHhcCCCeEEEeCcHHHhCCHHHHHHHHHhcCCCEEECCCCC-----CCHHHH
Confidence 34455555566667799999999988765 5778999999987766 233344
Q ss_pred HHHHHHHHHhhCCCcEEEEec--CCCCHHHHHH
Q 018253 114 IMLIGHTVNCFGASVKVIGNT--GSNSTREAIH 144 (359)
Q Consensus 114 ~~li~~~v~~~~grvpViagv--g~~st~~ai~ 144 (359)
.+.++..++.+++++.|++|- ...+..+-++
T Consensus 157 ~~~L~~lv~~a~~~i~Im~GgGv~~~nv~~l~~ 189 (201)
T PF03932_consen 157 IENLKELVEQAKGRIEIMPGGGVRAENVPELVE 189 (201)
T ss_dssp HHHHHHHHHHHTTSSEEEEESS--TTTHHHHHH
T ss_pred HHHHHHHHHHcCCCcEEEecCCCCHHHHHHHHH
Confidence 555666677788999999974 4555544443
No 144
>PLN02591 tryptophan synthase
Probab=91.35 E-value=7.2 Score=36.91 Aligned_cols=36 Identities=17% Similarity=0.261 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHH
Q 018253 80 AYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVN 122 (359)
Q Consensus 80 ~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~ 122 (359)
++++.++.+.++|++|+++. -|..+|..++.+.+.+
T Consensus 94 G~~~F~~~~~~aGv~Gviip-------DLP~ee~~~~~~~~~~ 129 (250)
T PLN02591 94 GIDKFMATIKEAGVHGLVVP-------DLPLEETEALRAEAAK 129 (250)
T ss_pred HHHHHHHHHHHcCCCEEEeC-------CCCHHHHHHHHHHHHH
Confidence 77888999999999999987 3555666666655443
No 145
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=91.34 E-value=3.9 Score=40.11 Aligned_cols=68 Identities=13% Similarity=0.159 Sum_probs=49.0
Q ss_pred HHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCCCHHHHHHHHHHHHhCCCCEEEE
Q 018253 81 YDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALH 159 (359)
Q Consensus 81 l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~st~~ai~la~~a~~~Gadav~v 159 (359)
....++.+++.|++.|.+..+.|-. +...++++...+..+ ++||++|.. .+.+.++.+.++|||++.+
T Consensus 95 ~~~~~~~l~eagv~~I~vd~~~G~~-----~~~~~~i~~ik~~~p-~v~Vi~G~v-----~t~~~A~~l~~aGaD~I~v 162 (325)
T cd00381 95 DKERAEALVEAGVDVIVIDSAHGHS-----VYVIEMIKFIKKKYP-NVDVIAGNV-----VTAEAARDLIDAGADGVKV 162 (325)
T ss_pred HHHHHHHHHhcCCCEEEEECCCCCc-----HHHHHHHHHHHHHCC-CceEEECCC-----CCHHHHHHHHhcCCCEEEE
Confidence 4567888899999999887666532 456677777776554 688988543 2345566777899999987
No 146
>PTZ00413 lipoate synthase; Provisional
Probab=91.31 E-value=2.2 Score=42.82 Aligned_cols=76 Identities=11% Similarity=0.044 Sum_probs=54.4
Q ss_pred HHHHHHHHCCCCEEEEccCccCcC-------CCCHHHHHHHHHHHHHhhCCCc----EEEEecCCCCHHHHHHHHHHHHh
Q 018253 83 DLVNMQIVNGAEGMIVGGTTGEGQ-------LMSWDEHIMLIGHTVNCFGASV----KVIGNTGSNSTREAIHATEQGFA 151 (359)
Q Consensus 83 ~li~~li~~Gv~Gl~v~GstGE~~-------~LT~~Er~~li~~~v~~~~grv----pViagvg~~st~~ai~la~~a~~ 151 (359)
..++.+.++|++-+--|=-|.|-. .-|.+++.++++.+.+...+++ -+|+|.|. +.+|.++.++++.+
T Consensus 243 e~l~~L~eAG~dvynHNLETv~rLyp~VRt~~atYe~sLe~Lr~AKe~f~~gi~tcSGiIVGLGE-T~eEvie~m~dLre 321 (398)
T PTZ00413 243 KSVEKLANSPLSVYAHNIECVERITPYVRDRRASYRQSLKVLEHVKEFTNGAMLTKSSIMLGLGE-TEEEVRQTLRDLRT 321 (398)
T ss_pred HHHHHHHhcCCCEEecccccCHhHHHHHccCcCCHHHHHHHHHHHHHHhcCCceEeeeeEecCCC-CHHHHHHHHHHHHH
Confidence 455667778888776665555532 2478888888888877533443 35888774 78888899999999
Q ss_pred CCCCEEEE
Q 018253 152 VGMHAALH 159 (359)
Q Consensus 152 ~Gadav~v 159 (359)
+|+|-+-+
T Consensus 322 lGVDivtI 329 (398)
T PTZ00413 322 AGVSAVTL 329 (398)
T ss_pred cCCcEEee
Confidence 99887766
No 147
>cd02811 IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl diphosphate isomerase type 2 (IDI-2) FMN-binding domain. Two types of IDIs have been characterized at present. The long known IDI-1 is only dependent on divalent metals for activity, whereas IDI-2 requires a metal, FMN and NADPH. IDI-2 catalyzes the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) in the mevalonate pathway.
Probab=91.26 E-value=1.5 Score=43.12 Aligned_cols=95 Identities=13% Similarity=0.181 Sum_probs=58.6
Q ss_pred HHHHHHHHHCCCCEEEEccCccCcCC--------C------------CHHHHHHHHHHHHHhhCCCcEEEEecCCCCHHH
Q 018253 82 DDLVNMQIVNGAEGMIVGGTTGEGQL--------M------------SWDEHIMLIGHTVNCFGASVKVIGNTGSNSTRE 141 (359)
Q Consensus 82 ~~li~~li~~Gv~Gl~v~GstGE~~~--------L------------T~~Er~~li~~~v~~~~grvpViagvg~~st~~ 141 (359)
...+..+.+.|+++|.+.|.-|=.+. . .... ...+..+.+... ++|||+.=|=.+-.+
T Consensus 192 ~~~a~~l~~~Gvd~I~vsG~GGt~~~~ie~~r~~~~~~~~~~~~~~~g~~t-~~~l~~~~~~~~-~ipIiasGGIr~~~d 269 (326)
T cd02811 192 RETAKRLADAGVKAIDVAGAGGTSWARVENYRAKDSDQRLAEYFADWGIPT-AASLLEVRSALP-DLPLIASGGIRNGLD 269 (326)
T ss_pred HHHHHHHHHcCCCEEEECCCCCCcccccccccccccccccccccccccccH-HHHHHHHHHHcC-CCcEEEECCCCCHHH
Confidence 35666778899999999886441100 0 0000 122223333333 789988444344444
Q ss_pred HHHHHHHHHhCCCCEEEEcCCCCCC--CCHHHHHHHHHHHHhc
Q 018253 142 AIHATEQGFAVGMHAALHINPYYGK--TSLEGLISHFDSVLSM 182 (359)
Q Consensus 142 ai~la~~a~~~Gadav~v~pP~y~~--~s~~~l~~yf~~Ia~a 182 (359)
+++. ..+|||+|++..|++.. ..++++..|++.+.+.
T Consensus 270 v~ka----l~lGAd~V~i~~~~L~~~~~g~~~~~~~i~~~~~e 308 (326)
T cd02811 270 IAKA----LALGADLVGMAGPFLKAALEGEEAVIETIEQIIEE 308 (326)
T ss_pred HHHH----HHhCCCEEEEcHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 4443 34799999999997532 2788899999988765
No 148
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=91.09 E-value=8.3 Score=36.12 Aligned_cols=78 Identities=12% Similarity=0.085 Sum_probs=54.7
Q ss_pred HHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCCCHHHHHHHHHHHHhCCCCEEEEcC
Q 018253 82 DDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHIN 161 (359)
Q Consensus 82 ~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~st~~ai~la~~a~~~Gadav~v~p 161 (359)
..+++.+.+.|++-+++...+.....- ..-.++++.+.+.+ ++||+++=|-.+.+++.++.. .|++++++-.
T Consensus 33 ~~~a~~~~~~G~~~i~i~dl~~~~~~~--~~~~~~i~~i~~~~--~ipv~~~GGi~s~~~~~~~l~----~Ga~~Viigt 104 (253)
T PRK02083 33 VELAKRYNEEGADELVFLDITASSEGR--DTMLDVVERVAEQV--FIPLTVGGGIRSVEDARRLLR----AGADKVSINS 104 (253)
T ss_pred HHHHHHHHHcCCCEEEEEeCCcccccC--cchHHHHHHHHHhC--CCCEEeeCCCCCHHHHHHHHH----cCCCEEEECh
Confidence 345555668999999999988632211 34566777776665 589999877766766665544 7999999987
Q ss_pred CCCCCC
Q 018253 162 PYYGKT 167 (359)
Q Consensus 162 P~y~~~ 167 (359)
..+..|
T Consensus 105 ~~l~~p 110 (253)
T PRK02083 105 AAVANP 110 (253)
T ss_pred hHhhCc
Confidence 776544
No 149
>PRK09432 metF 5,10-methylenetetrahydrofolate reductase; Provisional
Probab=91.01 E-value=13 Score=35.99 Aligned_cols=125 Identities=10% Similarity=0.097 Sum_probs=78.2
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEccCc----cCcCCCCHHHHHHHHHHHHHhhCCCcEEEEe-----cCCCCHHHHHHHH
Q 018253 76 FDLEAYDDLVNMQIVNGAEGMIVGGTT----GEGQLMSWDEHIMLIGHTVNCFGASVKVIGN-----TGSNSTREAIHAT 146 (359)
Q Consensus 76 ID~~~l~~li~~li~~Gv~Gl~v~Gst----GE~~~LT~~Er~~li~~~v~~~~grvpViag-----vg~~st~~ai~la 146 (359)
.|...+...+..+.+.||+.+++++.= |+....... ++++...+.-.-++- +++ ..+.+.++-++..
T Consensus 94 ~n~~~l~~~L~~~~~~GI~niLaLrGD~p~~~~~~~~~a~---dLv~li~~~~~~~i~-va~yPeghp~~~~~~~dl~~L 169 (296)
T PRK09432 94 ATPDELRTIAKDYWNNGIRHIVALRGDLPPGSGKPEMYAS---DLVTLLKSVADFDIS-VAAYPEVHPEAKSAQADLINL 169 (296)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEeCCCCCCCCCCCCcCHH---HHHHHHHHhCCCccc-eeeCCCCCCCCCCHHHHHHHH
Confidence 499999999999999999998887632 333333333 444433332111221 111 1244566677777
Q ss_pred HHHHhCCCCEEEEcCCCCCCCCHHHHHHHHHHHHhc---CCeEEEeCC-----------CCCCCCCCHHHHHHHhc
Q 018253 147 EQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSM---GPTIIYNVP-----------SRTGQDIPPRVIHTMAQ 208 (359)
Q Consensus 147 ~~a~~~Gadav~v~pP~y~~~s~~~l~~yf~~Ia~a---~PiiiYn~P-----------~~tg~~ls~e~l~~La~ 208 (359)
++=.++||| .+++-|+| +.+.+.+|.+.+.++ +||+.==.| ..+|+.++.+++++|.+
T Consensus 170 k~K~~aGA~-~~iTQ~~F---d~~~~~~f~~~~~~~Gi~vPIi~GI~pi~s~~~~~~~~~~~Gv~vP~~l~~~l~~ 241 (296)
T PRK09432 170 KRKVDAGAN-RAITQFFF---DVESYLRFRDRCVSAGIDVEIVPGILPVSNFKQLKKFADMTNVRIPAWMAKMFDG 241 (296)
T ss_pred HHHHHcCCC-eeeccccc---chHHHHHHHHHHHHcCCCCCEEeeccccCCHHHHHHHHHccCCCCCHHHHHHHHh
Confidence 777889998 56666777 667788888888765 576543222 23466666666666654
No 150
>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.
Probab=91.01 E-value=17 Score=35.66 Aligned_cols=81 Identities=17% Similarity=0.053 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHHHhhCCCcEEEEecCCCCHHHHHHHHHHHHhCCCCEEEEcCCC------CCCCC-HHHHHHHHHHHHhc
Q 018253 110 WDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPY------YGKTS-LEGLISHFDSVLSM 182 (359)
Q Consensus 110 ~~Er~~li~~~v~~~~grvpViagvg~~st~~ai~la~~a~~~Gadav~v~pP~------y~~~s-~~~l~~yf~~Ia~a 182 (359)
.++..+.++.+.+.. ++||++++...+.++-.+.++.++++|+|++-+--.. ....+ ++.+.+..+++.++
T Consensus 84 ~~~~~~~i~~~~~~~--~~pvi~si~g~~~~~~~~~a~~~~~~gad~iElN~s~~~~~~~~~g~~~~~~~~eiv~~v~~~ 161 (325)
T cd04739 84 PEEYLELIRRAKRAV--SIPVIASLNGVSAGGWVDYARQIEEAGADALELNIYALPTDPDISGAEVEQRYLDILRAVKSA 161 (325)
T ss_pred HHHHHHHHHHHHhcc--CCeEEEEeCCCCHHHHHHHHHHHHhcCCCEEEEeCCCCCCCCCcccchHHHHHHHHHHHHHhc
Confidence 455555555443322 5799999988899999999999999999999663211 11111 13345566666654
Q ss_pred --CCeEEEeCCC
Q 018253 183 --GPTIIYNVPS 192 (359)
Q Consensus 183 --~PiiiYn~P~ 192 (359)
.||++==.|.
T Consensus 162 ~~iPv~vKl~p~ 173 (325)
T cd04739 162 VTIPVAVKLSPF 173 (325)
T ss_pred cCCCEEEEcCCC
Confidence 5888775553
No 151
>CHL00162 thiG thiamin biosynthesis protein G; Validated
Probab=91.00 E-value=2.9 Score=39.60 Aligned_cols=89 Identities=19% Similarity=0.190 Sum_probs=67.5
Q ss_pred HHHHHHHCCCCEEEEccC-ccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCCCHHHHHHHHHHHHhCCCCEEEEcCC
Q 018253 84 LVNMQIVNGAEGMIVGGT-TGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINP 162 (359)
Q Consensus 84 li~~li~~Gv~Gl~v~Gs-tGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~st~~ai~la~~a~~~Gadav~v~pP 162 (359)
+.++|.+.|+..+..+|+ .|-+.-|...+-.+++. +. .++|||++.|=.+.+++ ..|.++|+|++++..-
T Consensus 150 ~a~rLed~Gc~aVMPlgsPIGSg~Gl~n~~~l~~i~---e~--~~vpVivdAGIgt~sDa----~~AmElGaDgVL~nSa 220 (267)
T CHL00162 150 LAKHLEDIGCATVMPLGSPIGSGQGLQNLLNLQIII---EN--AKIPVIIDAGIGTPSEA----SQAMELGASGVLLNTA 220 (267)
T ss_pred HHHHHHHcCCeEEeeccCcccCCCCCCCHHHHHHHH---Hc--CCCcEEEeCCcCCHHHH----HHHHHcCCCEEeecce
Confidence 567788999999999995 67777787777666653 32 46999998876667665 4567799999999988
Q ss_pred CCCCCCHHHHHHHHHHHHh
Q 018253 163 YYGKTSLEGLISHFDSVLS 181 (359)
Q Consensus 163 ~y~~~s~~~l~~yf~~Ia~ 181 (359)
.....++.++.+-|+.-.+
T Consensus 221 IakA~dP~~mA~a~~~AV~ 239 (267)
T CHL00162 221 VAQAKNPEQMAKAMKLAVQ 239 (267)
T ss_pred eecCCCHHHHHHHHHHHHH
Confidence 7766777777777765544
No 152
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=90.89 E-value=7.1 Score=38.87 Aligned_cols=102 Identities=11% Similarity=-0.034 Sum_probs=74.0
Q ss_pred HHHHHHHHHCCCCEEEEccCccCcC-----CCCHHHHHHHHHHHHHhhC-CCcEEEEec---CCCCHHHHHHHHHHHHhC
Q 018253 82 DDLVNMQIVNGAEGMIVGGTTGEGQ-----LMSWDEHIMLIGHTVNCFG-ASVKVIGNT---GSNSTREAIHATEQGFAV 152 (359)
Q Consensus 82 ~~li~~li~~Gv~Gl~v~GstGE~~-----~LT~~Er~~li~~~v~~~~-grvpViagv---g~~st~~ai~la~~a~~~ 152 (359)
.+-++..+++|++.+-+.-++++.+ ..|.+|-.+.+..+++.+. ....|.++. +..+.+..++.++.+.++
T Consensus 74 ~~di~~a~~~g~~~i~i~~~~Sd~~~~~~~~~~~~~~~~~~~~~i~~ak~~G~~v~~~~eda~r~~~~~l~~~~~~~~~~ 153 (363)
T TIGR02090 74 KKDIDKAIDCGVDSIHTFIATSPIHLKYKLKKSRDEVLEKAVEAVEYAKEHGLIVEFSAEDATRTDIDFLIKVFKRAEEA 153 (363)
T ss_pred HHHHHHHHHcCcCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEEEEeecCCCCHHHHHHHHHHHHhC
Confidence 3447778889999999988888764 4577776666665555443 223454443 445788899999999999
Q ss_pred CCCEEEEcCCCCCCCCHHHHHHHHHHHHhcCC
Q 018253 153 GMHAALHINPYYGKTSLEGLISHFDSVLSMGP 184 (359)
Q Consensus 153 Gadav~v~pP~y~~~s~~~l~~yf~~Ia~a~P 184 (359)
|+|.+.+..- ....+++++.+.++.+.+..|
T Consensus 154 g~~~i~l~DT-~G~~~P~~v~~li~~l~~~~~ 184 (363)
T TIGR02090 154 GADRINIADT-VGVLTPQKMEELIKKLKENVK 184 (363)
T ss_pred CCCEEEEeCC-CCccCHHHHHHHHHHHhcccC
Confidence 9998776643 466788999999999987744
No 153
>cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=90.81 E-value=2.2 Score=39.23 Aligned_cols=78 Identities=15% Similarity=0.221 Sum_probs=45.3
Q ss_pred HHHHHHHCCCCEEEEccCccCcCCCCH-HHHHHHHHHHHHhhCCCcEEEEecCCCCHHHHHHHHHHHHhCCCCEEEEcCC
Q 018253 84 LVNMQIVNGAEGMIVGGTTGEGQLMSW-DEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINP 162 (359)
Q Consensus 84 li~~li~~Gv~Gl~v~GstGE~~~LT~-~Er~~li~~~v~~~~grvpViagvg~~st~~ai~la~~a~~~Gadav~v~pP 162 (359)
.++.+.+.|++++++.+....+...+. ....++++.+.+.. ++||+++=|=.+.+++.+.. +.|+|+|++...
T Consensus 114 ~~~~~~~~gad~i~~~~~~~~G~~~~~~~~~~~~i~~i~~~~--~~Pvi~~GGI~~~~~v~~~l----~~GadgV~vgS~ 187 (236)
T cd04730 114 EARKAEAAGADALVAQGAEAGGHRGTFDIGTFALVPEVRDAV--DIPVIAAGGIADGRGIAAAL----ALGADGVQMGTR 187 (236)
T ss_pred HHHHHHHcCCCEEEEeCcCCCCCCCccccCHHHHHHHHHHHh--CCCEEEECCCCCHHHHHHHH----HcCCcEEEEchh
Confidence 345566789999887543211222111 12345566665554 57988754433334444333 489999999988
Q ss_pred CCCCC
Q 018253 163 YYGKT 167 (359)
Q Consensus 163 ~y~~~ 167 (359)
.....
T Consensus 188 l~~~~ 192 (236)
T cd04730 188 FLATE 192 (236)
T ss_pred hhcCc
Confidence 77554
No 154
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=90.81 E-value=4.3 Score=39.13 Aligned_cols=97 Identities=18% Similarity=0.177 Sum_probs=62.2
Q ss_pred HHHHHHCCCCEEEEccCccCc-----CCCCHHHHHHHHHHHHHhhCC-CcEEEEec---------CCCCHHHHHHHHHHH
Q 018253 85 VNMQIVNGAEGMIVGGTTGEG-----QLMSWDEHIMLIGHTVNCFGA-SVKVIGNT---------GSNSTREAIHATEQG 149 (359)
Q Consensus 85 i~~li~~Gv~Gl~v~GstGE~-----~~LT~~Er~~li~~~v~~~~g-rvpViagv---------g~~st~~ai~la~~a 149 (359)
++.-++.|++.+-+.-+++|. ...|.+|-.+.++.+++.+.. ...|.+.+ +..+.+..+++++.+
T Consensus 85 ie~A~~~g~~~v~i~~~~s~~~~~~n~~~~~~e~l~~~~~~v~~ak~~g~~v~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 164 (287)
T PRK05692 85 LEAALAAGADEVAVFASASEAFSQKNINCSIAESLERFEPVAEAAKQAGVRVRGYVSCVLGCPYEGEVPPEAVADVAERL 164 (287)
T ss_pred HHHHHHcCCCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEEEEEEEecCCCCCCCCHHHHHHHHHHH
Confidence 355667899988888888874 456667766666666665432 23443221 133577788888888
Q ss_pred HhCCCCEEEEcCCCCCCCCHHHHHHHHHHHHhc
Q 018253 150 FAVGMHAALHINPYYGKTSLEGLISHFDSVLSM 182 (359)
Q Consensus 150 ~~~Gadav~v~pP~y~~~s~~~l~~yf~~Ia~a 182 (359)
.++|+|.+.+.- .....++.++.+.++.+.+.
T Consensus 165 ~~~G~d~i~l~D-T~G~~~P~~v~~lv~~l~~~ 196 (287)
T PRK05692 165 FALGCYEISLGD-TIGVGTPGQVRAVLEAVLAE 196 (287)
T ss_pred HHcCCcEEEecc-ccCccCHHHHHHHHHHHHHh
Confidence 888887655543 33445677777777777765
No 155
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed
Probab=90.75 E-value=2.1 Score=41.96 Aligned_cols=84 Identities=11% Similarity=0.075 Sum_probs=59.6
Q ss_pred CHHHHHHHHHHHHHCCCCEEEEccCc-----cCcCCCCHHH-HHHHHHHHHHhhCCCcEEEEecCCCCHHHHHHHHHHHH
Q 018253 77 DLEAYDDLVNMQIVNGAEGMIVGGTT-----GEGQLMSWDE-HIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGF 150 (359)
Q Consensus 77 D~~~l~~li~~li~~Gv~Gl~v~Gst-----GE~~~LT~~E-r~~li~~~v~~~~grvpViagvg~~st~~ai~la~~a~ 150 (359)
+.+.+.+.++.+.+.|+++|-++-+. +. ...+.++ ..++++.+.+.+ ++||++=.+. ...+..+.++.++
T Consensus 112 ~~~e~~~~a~~~~~agad~ielN~scpp~~~~~-~g~~~~~~~~eil~~v~~~~--~iPV~vKl~p-~~~~~~~~a~~l~ 187 (334)
T PRK07565 112 SAGGWVDYARQIEQAGADALELNIYYLPTDPDI-SGAEVEQRYLDILRAVKSAV--SIPVAVKLSP-YFSNLANMAKRLD 187 (334)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeCCCCCCCCCC-ccccHHHHHHHHHHHHHhcc--CCcEEEEeCC-CchhHHHHHHHHH
Confidence 45677788888888999999886442 22 2233433 346666666654 5899998764 3457889999999
Q ss_pred hCCCCEEEEcCCCC
Q 018253 151 AVGMHAALHINPYY 164 (359)
Q Consensus 151 ~~Gadav~v~pP~y 164 (359)
+.|+|++.+..-.+
T Consensus 188 ~~G~dgI~~~n~~~ 201 (334)
T PRK07565 188 AAGADGLVLFNRFY 201 (334)
T ss_pred HcCCCeEEEECCcC
Confidence 99999998876543
No 156
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=90.73 E-value=2.7 Score=40.54 Aligned_cols=74 Identities=15% Similarity=0.153 Sum_probs=52.0
Q ss_pred CHHHHHHHHHHHHHCCCCEEEEccCcc-CcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCCCHHHHHHHHHHHHhCCCC
Q 018253 77 DLEAYDDLVNMQIVNGAEGMIVGGTTG-EGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMH 155 (359)
Q Consensus 77 D~~~l~~li~~li~~Gv~Gl~v~GstG-E~~~LT~~Er~~li~~~v~~~~grvpViagvg~~st~~ai~la~~a~~~Gad 155 (359)
|.+.+.++++...+.|+++|.++...- +...++. +.++.+++.++ +||++..- .+ .+.++.+.++|+|
T Consensus 127 ~~~~~~~~i~~~~~~g~~~i~l~~~~p~~~~~~~~----~~i~~l~~~~~--~pvivK~v-~s----~~~a~~a~~~G~d 195 (299)
T cd02809 127 DREITEDLLRRAEAAGYKALVLTVDTPVLGRRLTW----DDLAWLRSQWK--GPLILKGI-LT----PEDALRAVDAGAD 195 (299)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEecCCCCCCCCCCH----HHHHHHHHhcC--CCEEEeec-CC----HHHHHHHHHCCCC
Confidence 678888899999999999988865433 3333323 45666666554 68887522 22 4558888999999
Q ss_pred EEEEcC
Q 018253 156 AALHIN 161 (359)
Q Consensus 156 av~v~p 161 (359)
++.+..
T Consensus 196 ~I~v~~ 201 (299)
T cd02809 196 GIVVSN 201 (299)
T ss_pred EEEEcC
Confidence 999874
No 157
>cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain. Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.
Probab=90.71 E-value=13 Score=37.33 Aligned_cols=129 Identities=15% Similarity=0.123 Sum_probs=79.1
Q ss_pred CCCCHHHHHHHHHHHH-------HCCCCEEEEccCc-cC----cC-----------CCCHHHHHHHHHHHHHhhCC----
Q 018253 74 GRFDLEAYDDLVNMQI-------VNGAEGMIVGGTT-GE----GQ-----------LMSWDEHIMLIGHTVNCFGA---- 126 (359)
Q Consensus 74 g~ID~~~l~~li~~li-------~~Gv~Gl~v~Gst-GE----~~-----------~LT~~Er~~li~~~v~~~~g---- 126 (359)
..+..+.+..+++... ++|.|||=+.+.. |- |. -=|.+.|.+++..+++.+..
T Consensus 138 ~~mt~~eI~~ii~~f~~AA~ra~~AGfDgVEih~ah~GyLl~qFLSp~~N~RtDeyGGslenR~rf~~eii~~vr~~~g~ 217 (382)
T cd02931 138 RELTTEEVETFVGKFGESAVIAKEAGFDGVEIHAVHEGYLLDQFTISLFNKRTDKYGGSLENRLRFAIEIVEEIKARCGE 217 (382)
T ss_pred CcCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEeccccChHHHHhcCCccCCCCCcCCCCHHHHhHHHHHHHHHHHHhcCC
Confidence 3467777777766555 7999999887644 43 11 11568888887777776543
Q ss_pred CcEEEEecC---------------------CCCHHHHHHHHHHHHhCCCCEEEEcCCCCC-----CCC---HHHH-HHHH
Q 018253 127 SVKVIGNTG---------------------SNSTREAIHATEQGFAVGMHAALHINPYYG-----KTS---LEGL-ISHF 176 (359)
Q Consensus 127 rvpViagvg---------------------~~st~~ai~la~~a~~~Gadav~v~pP~y~-----~~s---~~~l-~~yf 176 (359)
+.||-+=++ +.+.++++++++..++.|+|.+-+....|. .+. .++. ..+-
T Consensus 218 ~f~v~vri~~~~~~~~~~~~~~~~~~~~~~g~~~e~~~~~~~~l~~~gvD~l~vs~g~~~~~~~~~~~~~~~~~~~~~~~ 297 (382)
T cd02931 218 DFPVSLRYSVKSYIKDLRQGALPGEEFQEKGRDLEEGLKAAKILEEAGYDALDVDAGSYDAWYWNHPPMYQKKGMYLPYC 297 (382)
T ss_pred CceEEEEEechhhccccccccccccccccCCCCHHHHHHHHHHHHHhCCCEEEeCCCCCcccccccCCccCCcchhHHHH
Confidence 345544222 346899999999999999999988754321 111 1111 2233
Q ss_pred HHHHhc--CCeEEEeCCCCCCCCCCHHHHHHHhc
Q 018253 177 DSVLSM--GPTIIYNVPSRTGQDIPPRVIHTMAQ 208 (359)
Q Consensus 177 ~~Ia~a--~PiiiYn~P~~tg~~ls~e~l~~La~ 208 (359)
+.+.+. .||+. +|---+++...++.+
T Consensus 298 ~~ik~~~~~pvi~------~G~i~~~~~~~~~l~ 325 (382)
T cd02931 298 KALKEVVDVPVIM------AGRMEDPELASEAIN 325 (382)
T ss_pred HHHHHHCCCCEEE------eCCCCCHHHHHHHHH
Confidence 334443 57664 243347888777654
No 158
>cd06557 KPHMT-like Ketopantoate hydroxymethyltransferase (KPHMT) is the first enzyme in the pantothenate biosynthesis pathway. Ketopantoate hydroxymethyltransferase (KPHMT) catalyzes the first committed step in the biosynthesis of pantothenate (vitamin B5), which is a precursor to coenzyme A and is required for penicillin biosynthesis.
Probab=90.67 E-value=3.1 Score=39.47 Aligned_cols=103 Identities=17% Similarity=0.184 Sum_probs=72.6
Q ss_pred eeecCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEccCcc-----C--cCCCCHHHHHHHHHHHHHhhCCCcE-EEEec--
Q 018253 65 AIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTG-----E--GQLMSWDEHIMLIGHTVNCFGASVK-VIGNT-- 134 (359)
Q Consensus 65 al~TPF~~dg~ID~~~l~~li~~li~~Gv~Gl~v~GstG-----E--~~~LT~~Er~~li~~~v~~~~grvp-Viagv-- 134 (359)
.++|.+| ....+++ -++|++.+++..+.+ - .-.+|.+|-..-++.+++.+ ..| |++-.
T Consensus 15 ~~~~ayD-------~~sA~l~---e~aG~d~i~vGds~~~~~lG~pDt~~vtl~em~~~~~~V~r~~--~~p~viaD~~f 82 (254)
T cd06557 15 VMLTAYD-------YPTAKLA---DEAGVDVILVGDSLGMVVLGYDSTLPVTLDEMIYHTRAVRRGA--PRALVVADMPF 82 (254)
T ss_pred EEEeCCC-------HHHHHHH---HHcCCCEEEECHHHHHHHcCCCCCCCcCHHHHHHHHHHHHhcC--CCCeEEEeCCC
Confidence 5567765 2233333 357999999653433 1 23689999999888888765 357 77644
Q ss_pred C--CCCHHHHHHHHHHHHh-CCCCEEEEcCCCCCCCCHHHHHHHHHHHHhc-CCeE
Q 018253 135 G--SNSTREAIHATEQGFA-VGMHAALHINPYYGKTSLEGLISHFDSVLSM-GPTI 186 (359)
Q Consensus 135 g--~~st~~ai~la~~a~~-~Gadav~v~pP~y~~~s~~~l~~yf~~Ia~a-~Pii 186 (359)
+ .+|.+++++.+.+..+ +||+++-+-- +++..+-.+.+.++ .|++
T Consensus 83 g~y~~~~~~av~~a~r~~~~aGa~aVkiEd-------~~~~~~~I~al~~agipV~ 131 (254)
T cd06557 83 GSYQTSPEQALRNAARLMKEAGADAVKLEG-------GAEVAETIRALVDAGIPVM 131 (254)
T ss_pred CcccCCHHHHHHHHHHHHHHhCCeEEEEcC-------cHHHHHHHHHHHHcCCCee
Confidence 3 3578999999777766 9999998863 46788888888887 6887
No 159
>PRK13753 dihydropteroate synthase; Provisional
Probab=90.65 E-value=7.1 Score=37.57 Aligned_cols=120 Identities=8% Similarity=0.066 Sum_probs=75.2
Q ss_pred CCceEEeeecCCCCCCC-CCHHHHHHHHHHHHHCCCCEEEEccCcc-CcC-CCCHHH-HHHHHHHHHHhhCCCcEEEEec
Q 018253 59 ALRLITAIKTPYLPDGR-FDLEAYDDLVNMQIVNGAEGMIVGGTTG-EGQ-LMSWDE-HIMLIGHTVNCFGASVKVIGNT 134 (359)
Q Consensus 59 ~~Gi~~al~TPF~~dg~-ID~~~l~~li~~li~~Gv~Gl~v~GstG-E~~-~LT~~E-r~~li~~~v~~~~grvpViagv 134 (359)
+.||+-..+=-|.+.|. .|.+...++++.+++.|++-|=++|-.+ -+. ..|.+| ..+++..+.......+| +.|
T Consensus 4 iMGIlNvTPDSFsDGg~~~~~d~a~~~a~~m~~~GAdIIDIGgeSTrPga~~vs~eeE~~Rv~pvI~~l~~~~~~--ISI 81 (279)
T PRK13753 4 VFGILNLTEDSFFDESRRLDPAGAVTAAIEMLRVGSDVVDVGPAASHPDARPVSPADEIRRIAPLLDALSDQMHR--VSI 81 (279)
T ss_pred EEEEEeCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEEECCCCCCCCCCcCCHHHHHHHHHHHHHHHHhCCCc--EEE
Confidence 45666555555877776 6999999999999999999999999444 332 345554 55454443333322344 355
Q ss_pred CCCCHHHHHHHHHHHHhCCCCEEEEcCCCCCCCCHHHHHHHHHHHHhc-CCeEEEeCC
Q 018253 135 GSNSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSM-GPTIIYNVP 191 (359)
Q Consensus 135 g~~st~~ai~la~~a~~~Gadav~v~pP~y~~~s~~~l~~yf~~Ia~a-~PiiiYn~P 191 (359)
-+...+ .++.|.++|||-+.=+.-. +.+++ ++.+++. .|+++-+..
T Consensus 82 DT~~~~----va~~al~aGadiINDVsg~----~d~~~---~~vva~~~~~vVlmH~~ 128 (279)
T PRK13753 82 DSFQPE----TQRYALKRGVGYLNDIQGF----PDPAL---YPDIAEADCRLVVMHSA 128 (279)
T ss_pred ECCCHH----HHHHHHHcCCCEEEeCCCC----CchHH---HHHHHHcCCCEEEEecC
Confidence 544443 3456678999976665322 22333 4455665 798887763
No 160
>PRK02506 dihydroorotate dehydrogenase 1A; Reviewed
Probab=90.63 E-value=5.2 Score=38.92 Aligned_cols=84 Identities=11% Similarity=-0.062 Sum_probs=56.8
Q ss_pred CCCHHHHHHHHHHHHHhhCCCcEEEEecCCCCHHHHHHHHHHHHhCC-CCEEEE--cCCCCC-----CCCHHHHHHHHHH
Q 018253 107 LMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVG-MHAALH--INPYYG-----KTSLEGLISHFDS 178 (359)
Q Consensus 107 ~LT~~Er~~li~~~v~~~~grvpViagvg~~st~~ai~la~~a~~~G-adav~v--~pP~y~-----~~s~~~l~~yf~~ 178 (359)
....++..+.++...+.. .++|||+.+.+.+.++-.+.++..++.| ||++-+ .-|... ..+.+.+.+..+.
T Consensus 73 n~g~~~~~~~i~~~~~~~-~~~pvI~Si~G~~~~~~~~~a~~~~~~g~ad~iElN~ScPn~~~~~~~g~d~~~~~~i~~~ 151 (310)
T PRK02506 73 NLGFDYYLDYVLELQKKG-PNKPHFLSVVGLSPEETHTILKKIQASDFNGLVELNLSCPNVPGKPQIAYDFETTEQILEE 151 (310)
T ss_pred CcCHHHHHHHHHHHHhhc-CCCCEEEEEEeCcHHHHHHHHHHHhhcCCCCEEEEECCCCCCCCccccccCHHHHHHHHHH
Confidence 444566666655443322 2479999988889999999999999998 998864 334321 1245667777777
Q ss_pred HHhc--CCeEEEeCC
Q 018253 179 VLSM--GPTIIYNVP 191 (359)
Q Consensus 179 Ia~a--~PiiiYn~P 191 (359)
|.+. .|+++==.|
T Consensus 152 v~~~~~~Pv~vKlsp 166 (310)
T PRK02506 152 VFTYFTKPLGVKLPP 166 (310)
T ss_pred HHHhcCCccEEecCC
Confidence 7665 587764434
No 161
>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=90.61 E-value=5.4 Score=39.53 Aligned_cols=89 Identities=12% Similarity=0.096 Sum_probs=59.3
Q ss_pred CCCHHHHHHHHHH-------HHHCCCCEEEEccC----------------ccCcCCCCHHHHHHHHHHHHHhh----C--
Q 018253 75 RFDLEAYDDLVNM-------QIVNGAEGMIVGGT----------------TGEGQLMSWDEHIMLIGHTVNCF----G-- 125 (359)
Q Consensus 75 ~ID~~~l~~li~~-------li~~Gv~Gl~v~Gs----------------tGE~~~LT~~Er~~li~~~v~~~----~-- 125 (359)
.++.+.++++++. ..++|.|||-+.+. |.|+-- |.+-|.+++..+++.+ +
T Consensus 133 ~mt~~eI~~ii~~f~~aA~~a~~aGfDgVeih~ahGyLl~qFlsp~~N~R~D~yGG-slenR~r~~~eii~~vr~~vg~~ 211 (353)
T cd04735 133 ELTHEEIEDIIDAFGEATRRAIEAGFDGVEIHGANGYLIQQFFSPHSNRRTDEWGG-SLENRMRFPLAVVKAVQEVIDKH 211 (353)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEccccchHHHHhcCCccCCCCcccCC-cHHHHHHHHHHHHHHHHHHhccc
Confidence 3566666666654 44699999988763 333222 4567777666665544 3
Q ss_pred --CCcEEEEecC-------CCCHHHHHHHHHHHHhCCCCEEEEcCCCC
Q 018253 126 --ASVKVIGNTG-------SNSTREAIHATEQGFAVGMHAALHINPYY 164 (359)
Q Consensus 126 --grvpViagvg-------~~st~~ai~la~~a~~~Gadav~v~pP~y 164 (359)
.+.+|-+=++ +.+.+|++++++.+++.|+|.+-+....|
T Consensus 212 ~~~~~~v~~R~s~~~~~~~g~~~ee~~~i~~~L~~~GvD~I~Vs~g~~ 259 (353)
T cd04735 212 ADKDFILGYRFSPEEPEEPGIRMEDTLALVDKLADKGLDYLHISLWDF 259 (353)
T ss_pred cCCCceEEEEECcccccCCCCCHHHHHHHHHHHHHcCCCEEEeccCcc
Confidence 3444443222 34679999999999999999999887644
No 162
>TIGR01036 pyrD_sub2 dihydroorotate dehydrogenase, subfamily 2. The subfamilies 1 and 2 share extensive homology, particularly toward the C-terminus. This subfamily has a longer N-terminal region.
Probab=90.49 E-value=0.64 Score=45.82 Aligned_cols=86 Identities=16% Similarity=0.196 Sum_probs=57.1
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEccCccCcC------------CCC-HHHH---HHHHHHHHHhhCCCcEEEEecCCCCH
Q 018253 76 FDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQ------------LMS-WDEH---IMLIGHTVNCFGASVKVIGNTGSNST 139 (359)
Q Consensus 76 ID~~~l~~li~~li~~Gv~Gl~v~GstGE~~------------~LT-~~Er---~~li~~~v~~~~grvpViagvg~~st 139 (359)
++.+.+..+++.+.+.|++||.+.-|+-... -|| ...+ .+.+..+.+..++++|+|+-=|=.+.
T Consensus 221 ~~~~~i~~ia~~~~~~GadGi~l~NT~~~~~~~~~~~~~~~~GGlSG~~i~p~al~~v~~~~~~~~~~ipiig~GGI~~~ 300 (335)
T TIGR01036 221 LTESDLEDIADSLVELGIDGVIATNTTVSRSLVQGPKNSDETGGLSGKPLQDKSTEIIRRLYAELQGRLPIIGVGGISSA 300 (335)
T ss_pred CCHHHHHHHHHHHHHhCCcEEEEECCCCccccccCccccCCCCcccCHHHHHHHHHHHHHHHHHhCCCCCEEEECCCCCH
Confidence 3445788888888999999999877664211 122 1222 24555555566778998854344467
Q ss_pred HHHHHHHHHHHhCCCCEEEEcCCCCC
Q 018253 140 REAIHATEQGFAVGMHAALHINPYYG 165 (359)
Q Consensus 140 ~~ai~la~~a~~~Gadav~v~pP~y~ 165 (359)
++++++.. +|||+|.+..-.+.
T Consensus 301 ~da~e~l~----aGA~~Vqv~ta~~~ 322 (335)
T TIGR01036 301 QDALEKIR----AGASLLQIYSGFIY 322 (335)
T ss_pred HHHHHHHH----cCCcHHHhhHHHHH
Confidence 77877766 79999998876554
No 163
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=90.43 E-value=7.7 Score=37.25 Aligned_cols=77 Identities=12% Similarity=-0.034 Sum_probs=49.7
Q ss_pred CHHHHHHHHHHHHHhhCCCcEEEEecCCCCHHHHHHHHHHHHhCC--CCEEEE--cCCCCCC------CCHHHHHHHHHH
Q 018253 109 SWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVG--MHAALH--INPYYGK------TSLEGLISHFDS 178 (359)
Q Consensus 109 T~~Er~~li~~~v~~~~grvpViagvg~~st~~ai~la~~a~~~G--adav~v--~pP~y~~------~s~~~l~~yf~~ 178 (359)
..++..+.++...+. -..|+++++.+.+.++..+.++..++++ +|++-+ .-|.... .+.+.+.+.+++
T Consensus 74 g~~~~~~~~~~~~~~--~~~pl~~qi~g~~~~~~~~~a~~~~~~~~~~d~ielN~~cP~~~~~g~~l~~~~~~~~eiv~~ 151 (300)
T TIGR01037 74 GVEAFLEELKPVREE--FPTPLIASVYGSSVEEFAEVAEKLEKAPPYVDAYELNLSCPHVKGGGIAIGQDPELSADVVKA 151 (300)
T ss_pred CHHHHHHHHHHHhcc--CCCcEEEEeecCCHHHHHHHHHHHHhccCccCEEEEECCCCCCCCCccccccCHHHHHHHHHH
Confidence 455555555443322 2469999998889999999999999874 898876 3344321 345566666666
Q ss_pred HHhc--CCeEE
Q 018253 179 VLSM--GPTII 187 (359)
Q Consensus 179 Ia~a--~Piii 187 (359)
+.++ .||.+
T Consensus 152 vr~~~~~pv~v 162 (300)
T TIGR01037 152 VKDKTDVPVFA 162 (300)
T ss_pred HHHhcCCCEEE
Confidence 6554 35443
No 164
>COG0042 tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=90.40 E-value=4.3 Score=39.82 Aligned_cols=128 Identities=17% Similarity=0.101 Sum_probs=90.4
Q ss_pred CCCCHHHHHHHHHHHHHCCCCEEE----------EccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEec--CCCCH-H
Q 018253 74 GRFDLEAYDDLVNMQIVNGAEGMI----------VGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNT--GSNST-R 140 (359)
Q Consensus 74 g~ID~~~l~~li~~li~~Gv~Gl~----------v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagv--g~~st-~ 140 (359)
+.-|.+.+.+-.....+.|+++|= ..+..|.....+.+--.++++++++.++ ++||-+=+ |-... .
T Consensus 74 ~gsdp~~l~eaA~~~~~~g~~~IdlN~GCP~~~V~~~g~Ga~Ll~~p~lv~~iv~a~~~av~-~iPVTVKiRlG~d~~~~ 152 (323)
T COG0042 74 GGSDPELLAEAAKIAEELGADIIDLNCGCPSPKVVKGGAGAALLKNPELLAEIVKAMVEAVG-DIPVTVKIRLGWDDDDI 152 (323)
T ss_pred cCCCHHHHHHHHHHHHhcCCCEEeeeCCCChHHhcCCCcchhhcCCHHHHHHHHHHHHHhhC-CCCeEEEEecccCcccc
Confidence 345778899999999899988764 4577899999999999999999999887 78876633 22222 3
Q ss_pred HHHHHHHHHHhCCCCEEEEcCC----CCCCCCHHHHHHHHHHHHhcCC-e-EEEeCCCCCCCCCCHHHHHHHhcCC
Q 018253 141 EAIHATEQGFAVGMHAALHINP----YYGKTSLEGLISHFDSVLSMGP-T-IIYNVPSRTGQDIPPRVIHTMAQSP 210 (359)
Q Consensus 141 ~ai~la~~a~~~Gadav~v~pP----~y~~~s~~~l~~yf~~Ia~a~P-i-iiYn~P~~tg~~ls~e~l~~La~~p 210 (359)
.+.+.++.+++.|++++.|-.= .|..+ .-.++..+|.+..| + ++-| |--.+++...+..+.-
T Consensus 153 ~~~~ia~~~~~~g~~~ltVHgRtr~~~y~~~---ad~~~I~~vk~~~~~ipvi~N-----GdI~s~~~a~~~l~~t 220 (323)
T COG0042 153 LALEIARILEDAGADALTVHGRTRAQGYLGP---ADWDYIKELKEAVPSIPVIAN-----GDIKSLEDAKEMLEYT 220 (323)
T ss_pred cHHHHHHHHHhcCCCEEEEecccHHhcCCCc---cCHHHHHHHHHhCCCCeEEeC-----CCcCCHHHHHHHHHhh
Confidence 5889999999999999988754 23222 33555566666544 3 3333 3345677777765543
No 165
>cd04736 MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-binding domain. MDH is part of a widespread family of homologous FMN-dependent a-hydroxy acid oxidizing enzymes that oxidizes (S)-mandelate to phenylglyoxalate. MDH is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=90.39 E-value=2 Score=42.91 Aligned_cols=91 Identities=16% Similarity=0.141 Sum_probs=62.5
Q ss_pred HHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCCCHHHHHHHHHHHHhCCCCEEEEcCCCC
Q 018253 85 VNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYY 164 (359)
Q Consensus 85 i~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~st~~ai~la~~a~~~Gadav~v~pP~y 164 (359)
+..+++.|++||.+.+..|-...=... -.+.+..+++.++ +|||+-=|=.+-.+.+ .|..+|||+|++--|+.
T Consensus 250 a~~a~~~G~d~I~VSnhGGrqld~~~~-~~~~L~ei~~~~~--~~vi~dGGIr~g~Dv~----KALaLGA~aV~iGr~~l 322 (361)
T cd04736 250 AKRCIELGADGVILSNHGGRQLDDAIA-PIEALAEIVAATY--KPVLIDSGIRRGSDIV----KALALGANAVLLGRATL 322 (361)
T ss_pred HHHHHHCCcCEEEECCCCcCCCcCCcc-HHHHHHHHHHHhC--CeEEEeCCCCCHHHHH----HHHHcCCCEEEECHHHH
Confidence 445678999999999888854321111 2444445555553 8999854433444444 56679999999999987
Q ss_pred CC---CCHHHHHHHHHHHHhc
Q 018253 165 GK---TSLEGLISHFDSVLSM 182 (359)
Q Consensus 165 ~~---~s~~~l~~yf~~Ia~a 182 (359)
+. ..++++.++++.+.+.
T Consensus 323 ~~la~~G~~gv~~~l~~l~~e 343 (361)
T cd04736 323 YGLAARGEAGVSEVLRLLKEE 343 (361)
T ss_pred HHHHhcCHHHHHHHHHHHHHH
Confidence 53 5789999998888764
No 166
>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4.2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....
Probab=90.39 E-value=14 Score=35.11 Aligned_cols=178 Identities=17% Similarity=0.177 Sum_probs=105.9
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCCEEEEccCcc----Cc------------CCCCHHHHHHHHHHHHHhhCCCcEEEE
Q 018253 69 PYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTG----EG------------QLMSWDEHIMLIGHTVNCFGASVKVIG 132 (359)
Q Consensus 69 PF~~dg~ID~~~l~~li~~li~~Gv~Gl~v~GstG----E~------------~~LT~~Er~~li~~~v~~~~grvpVia 132 (359)
||---|--|.+.+.+.++.|.+.|+|-+=++=-.+ ++ .-+|.++-.++++...+. ..++|++.
T Consensus 14 ~yitaG~P~~~~~~~~~~~l~~~GaD~iEiGiPfSDP~ADGpvIq~A~~rAL~~G~~~~~~~~~~~~ir~~-~~~~pivl 92 (259)
T PF00290_consen 14 PYITAGYPDLETTLEILKALEEAGADIIEIGIPFSDPVADGPVIQKASQRALKNGFTLEKIFELVKEIRKK-EPDIPIVL 92 (259)
T ss_dssp EEEETTSSSHHHHHHHHHHHHHTTBSSEEEE--SSSCTTSSHHHHHHHHHHHHTT--HHHHHHHHHHHHHH-CTSSEEEE
T ss_pred EEEeCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHhcc-CCCCCEEE
Confidence 34446778999999999999999999665432222 22 235666667777776632 35789988
Q ss_pred ecCCCCHHH--HHHHHHHHHhCCCCEEEEcCCCCCCCCHHHHHHHHHHHHhc-CCeEEEeCCCCCCCCCCHHHHHHHhc-
Q 018253 133 NTGSNSTRE--AIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSM-GPTIIYNVPSRTGQDIPPRVIHTMAQ- 208 (359)
Q Consensus 133 gvg~~st~~--ai~la~~a~~~Gadav~v~pP~y~~~s~~~l~~yf~~Ia~a-~PiiiYn~P~~tg~~ls~e~l~~La~- 208 (359)
=...+..-. .=++.+.++++|+|++++.-=. .|+-..|.....+. +.++..=.| .-+.+-++++++
T Consensus 93 m~Y~N~i~~~G~e~F~~~~~~aGvdGlIipDLP-----~ee~~~~~~~~~~~gl~~I~lv~p-----~t~~~Ri~~i~~~ 162 (259)
T PF00290_consen 93 MTYYNPIFQYGIERFFKEAKEAGVDGLIIPDLP-----PEESEELREAAKKHGLDLIPLVAP-----TTPEERIKKIAKQ 162 (259)
T ss_dssp EE-HHHHHHH-HHHHHHHHHHHTEEEEEETTSB-----GGGHHHHHHHHHHTT-EEEEEEET-----TS-HHHHHHHHHH
T ss_pred EeeccHHhccchHHHHHHHHHcCCCEEEEcCCC-----hHHHHHHHHHHHHcCCeEEEEECC-----CCCHHHHHHHHHh
Confidence 777655433 3458999999999999985311 24445555544444 555555445 356788999884
Q ss_pred CCCeEEEec---cCch-----h-------hHhhhhCCceEEEecCCch--hhhhhhhcCCceeecccc
Q 018253 209 SPNLAGVKE---CVGN-----D-------RVEHYTGNGIVVWSGNDDQ--CHDARWNHGATGVISVTS 259 (359)
Q Consensus 209 ~pnivGiK~---ss~d-----~-------~l~~~~~~~~~v~~G~d~~--~~~~~l~~Ga~G~is~~a 259 (359)
.+.++.+=- .+|. . ++++++ +.-++.|..-. -....+..|+||+|-|++
T Consensus 163 a~gFiY~vs~~GvTG~~~~~~~~l~~~i~~ik~~~--~~Pv~vGFGI~~~e~~~~~~~~aDGvIVGSa 228 (259)
T PF00290_consen 163 ASGFIYLVSRMGVTGSRTELPDELKEFIKRIKKHT--DLPVAVGFGISTPEQAKKLAAGADGVIVGSA 228 (259)
T ss_dssp -SSEEEEESSSSSSSTTSSCHHHHHHHHHHHHHTT--SS-EEEESSS-SHHHHHHHHTTSSEEEESHH
T ss_pred CCcEEEeeccCCCCCCcccchHHHHHHHHHHHhhc--CcceEEecCCCCHHHHHHHHccCCEEEECHH
Confidence 566666531 1111 1 233333 55677766421 111235689999998854
No 167
>cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of in
Probab=90.34 E-value=2.6 Score=40.19 Aligned_cols=98 Identities=14% Similarity=0.093 Sum_probs=77.6
Q ss_pred CCCCHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCCCHHHHHHHHHHHHhCC
Q 018253 74 GRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVG 153 (359)
Q Consensus 74 g~ID~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~st~~ai~la~~a~~~G 153 (359)
...|.+-+.++++.+.+.|++.|.+.-|+| .+++++-.++++.+.+..+ ++++=++. +++..-++..+-.|.++|
T Consensus 146 ~~~~~~~~~~~~~~~~~~g~~~i~l~DT~G---~~~P~~v~~lv~~l~~~~~-~~~l~~H~-Hnd~Gla~An~laA~~aG 220 (273)
T cd07941 146 YKANPEYALATLKAAAEAGADWLVLCDTNG---GTLPHEIAEIVKEVRERLP-GVPLGIHA-HNDSGLAVANSLAAVEAG 220 (273)
T ss_pred CCCCHHHHHHHHHHHHhCCCCEEEEecCCC---CCCHHHHHHHHHHHHHhCC-CCeeEEEe-cCCCCcHHHHHHHHHHcC
Confidence 368999999999999999999999999999 7899999999999988774 46765544 678888999999999999
Q ss_pred CCEEEEcCCCCC----CCCHHHHHHHH
Q 018253 154 MHAALHINPYYG----KTSLEGLISHF 176 (359)
Q Consensus 154 adav~v~pP~y~----~~s~~~l~~yf 176 (359)
++.+=..---+. ..+-+++..++
T Consensus 221 a~~id~s~~GlGeraGn~~~e~~~~~L 247 (273)
T cd07941 221 ATQVQGTINGYGERCGNANLCSIIPNL 247 (273)
T ss_pred CCEEEEeccccccccccccHHHHHHHH
Confidence 998865544332 23445555555
No 168
>PRK07226 fructose-bisphosphate aldolase; Provisional
Probab=90.29 E-value=2.2 Score=40.54 Aligned_cols=85 Identities=16% Similarity=0.141 Sum_probs=55.0
Q ss_pred cCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhC-CCcEEEEe-------c-CCCC
Q 018253 68 TPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFG-ASVKVIGN-------T-GSNS 138 (359)
Q Consensus 68 TPF~~dg~ID~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~-grvpViag-------v-g~~s 138 (359)
|+|.+++.= +.+...++..++.|++.+-+.--.|. +..++..+.++.+++.+. ..+|+++- + ...+
T Consensus 84 ~~~~~~~~~--~~~~~~ve~A~~~Gad~v~~~~~~g~---~~~~~~~~~~~~v~~~~~~~g~pl~vi~~~~g~~~e~~~~ 158 (267)
T PRK07226 84 TSLSPDPND--KVLVGTVEEAIKLGADAVSVHVNVGS---ETEAEMLEDLGEVAEECEEWGMPLLAMMYPRGPGIKNEYD 158 (267)
T ss_pred CCCCCCCCc--ceeeecHHHHHHcCCCEEEEEEecCC---hhHHHHHHHHHHHHHHHHHcCCcEEEEEecCCCccCCCcc
Confidence 677555432 55666788899999998777655442 235666666666666542 45787764 2 2234
Q ss_pred HHHHHHHHHHHHhCCCCEE
Q 018253 139 TREAIHATEQGFAVGMHAA 157 (359)
Q Consensus 139 t~~ai~la~~a~~~Gadav 157 (359)
.++..+.++.+.++|||.+
T Consensus 159 ~~~i~~a~~~a~e~GAD~v 177 (267)
T PRK07226 159 PEVVAHAARVAAELGADIV 177 (267)
T ss_pred HHHHHHHHHHHHHHCCCEE
Confidence 4555566788888999988
No 169
>PRK08649 inosine 5-monophosphate dehydrogenase; Validated
Probab=90.22 E-value=0.96 Score=45.24 Aligned_cols=73 Identities=15% Similarity=0.093 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHCCCCEEEEccCcc-CcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCCCHHHHHHHHHHHHhCCCCEEE
Q 018253 80 AYDDLVNMQIVNGAEGMIVGGTTG-EGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAAL 158 (359)
Q Consensus 80 ~l~~li~~li~~Gv~Gl~v~GstG-E~~~LT~~Er~~li~~~v~~~~grvpViagvg~~st~~ai~la~~a~~~Gadav~ 158 (359)
...++++.++++|++-|.+-|+|- +.+.-+......+.+... .. ++|||+|-. .+.+ .++++.++|||+|+
T Consensus 142 ~~~e~a~~l~eaGvd~I~vhgrt~~~~h~~~~~~~~~i~~~ik-~~--~ipVIaG~V-~t~e----~A~~l~~aGAD~V~ 213 (368)
T PRK08649 142 RAQELAPTVVEAGVDLFVIQGTVVSAEHVSKEGEPLNLKEFIY-EL--DVPVIVGGC-VTYT----TALHLMRTGAAGVL 213 (368)
T ss_pred CHHHHHHHHHHCCCCEEEEeccchhhhccCCcCCHHHHHHHHH-HC--CCCEEEeCC-CCHH----HHHHHHHcCCCEEE
Confidence 356788888999999999988763 222222112233443333 23 589998442 2334 44555569999998
Q ss_pred Ec
Q 018253 159 HI 160 (359)
Q Consensus 159 v~ 160 (359)
+-
T Consensus 214 VG 215 (368)
T PRK08649 214 VG 215 (368)
T ss_pred EC
Confidence 85
No 170
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=90.11 E-value=6.4 Score=37.63 Aligned_cols=99 Identities=13% Similarity=0.085 Sum_probs=54.1
Q ss_pred HHHHHHHHCCCCEEEEccCccCc-----CCCCHHHHHHHHHHHHHhhCC-CcEEEEecC---------CCCHHHHHHHHH
Q 018253 83 DLVNMQIVNGAEGMIVGGTTGEG-----QLMSWDEHIMLIGHTVNCFGA-SVKVIGNTG---------SNSTREAIHATE 147 (359)
Q Consensus 83 ~li~~li~~Gv~Gl~v~GstGE~-----~~LT~~Er~~li~~~v~~~~g-rvpViagvg---------~~st~~ai~la~ 147 (359)
+-++..++.|++.+-+.-+++|. ...|.+|-.+.+..+++.+.. ...|.+++. ..+.+..+++++
T Consensus 77 ~dv~~A~~~g~~~i~i~~~~Sd~~~~~~~~~s~~~~~~~~~~~v~~ak~~G~~v~~~i~~~f~~~~~~~~~~~~~~~~~~ 156 (274)
T cd07938 77 RGAERALAAGVDEVAVFVSASETFSQKNINCSIAESLERFEPVAELAKAAGLRVRGYVSTAFGCPYEGEVPPERVAEVAE 156 (274)
T ss_pred HHHHHHHHcCcCEEEEEEecCHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeEecCCCCCCCCHHHHHHHHH
Confidence 34667778888888888777773 334444544444444443321 122322111 224566666666
Q ss_pred HHHhCCCCEEEEcCCCCCCCCHHHHHHHHHHHHhc
Q 018253 148 QGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSM 182 (359)
Q Consensus 148 ~a~~~Gadav~v~pP~y~~~s~~~l~~yf~~Ia~a 182 (359)
.+.++|+|.+-+.- .....+++++.+.++.+.+.
T Consensus 157 ~~~~~Ga~~i~l~D-T~G~~~P~~v~~lv~~l~~~ 190 (274)
T cd07938 157 RLLDLGCDEISLGD-TIGVATPAQVRRLLEAVLER 190 (274)
T ss_pred HHHHcCCCEEEECC-CCCccCHHHHHHHHHHHHHH
Confidence 66666666544432 33344566666666666554
No 171
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=90.09 E-value=3.4 Score=39.43 Aligned_cols=112 Identities=14% Similarity=0.085 Sum_probs=84.2
Q ss_pred cCCceEEe--eecCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecC
Q 018253 58 KALRLITA--IKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTG 135 (359)
Q Consensus 58 ~~~Gi~~a--l~TPF~~dg~ID~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg 135 (359)
|-.|..+. +.+. ..+..|.+-+.+.++.+.+.|++.|.+.=|.|- +++++-.++++.+.+.++ +|+=++.
T Consensus 128 k~~G~~v~~~i~~~--~~~~~~~~~~~~~~~~~~~~Ga~~i~l~DT~G~---~~P~~v~~lv~~l~~~~~--~~l~~H~- 199 (275)
T cd07937 128 KKAGKHVEGAICYT--GSPVHTLEYYVKLAKELEDMGADSICIKDMAGL---LTPYAAYELVKALKKEVG--LPIHLHT- 199 (275)
T ss_pred HHCCCeEEEEEEec--CCCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCC---CCHHHHHHHHHHHHHhCC--CeEEEEe-
Confidence 45564332 3333 347799999999999999999999999999996 678999999988888764 6665554
Q ss_pred CCCHHHHHHHHHHHHhCCCCEEEEcCCCCC----CCCHHHHHHHHH
Q 018253 136 SNSTREAIHATEQGFAVGMHAALHINPYYG----KTSLEGLISHFD 177 (359)
Q Consensus 136 ~~st~~ai~la~~a~~~Gadav~v~pP~y~----~~s~~~l~~yf~ 177 (359)
+++..-++..+..|.++|++.+=..---+. ..+-|++..+.+
T Consensus 200 Hnd~GlA~aN~laA~~aGa~~vd~sv~GlG~~aGN~~~E~l~~~L~ 245 (275)
T cd07937 200 HDTSGLAVATYLAAAEAGVDIVDTAISPLSGGTSQPSTESMVAALR 245 (275)
T ss_pred cCCCChHHHHHHHHHHhCCCEEEEecccccCCcCChhHHHHHHHHH
Confidence 678888999999999999999876654443 234466666554
No 172
>PRK05437 isopentenyl pyrophosphate isomerase; Provisional
Probab=90.06 E-value=1.9 Score=42.83 Aligned_cols=94 Identities=15% Similarity=0.190 Sum_probs=57.9
Q ss_pred HHHHHHHHHCCCCEEEEccCccCcCCCCHHH--H-----------------HHHHHHHHHhhCCCcEEEEecCCCCHHHH
Q 018253 82 DDLVNMQIVNGAEGMIVGGTTGEGQLMSWDE--H-----------------IMLIGHTVNCFGASVKVIGNTGSNSTREA 142 (359)
Q Consensus 82 ~~li~~li~~Gv~Gl~v~GstGE~~~LT~~E--r-----------------~~li~~~v~~~~grvpViagvg~~st~~a 142 (359)
...+..+.+.|+++|.+.|..|=.+ ..-| | ...+..+.+.. .++|||+.=|=.+..++
T Consensus 200 ~~~a~~l~~~Gvd~I~Vsg~GGt~~--~~ie~~R~~~~~~~~~~~~~g~pt~~~l~~i~~~~-~~ipvia~GGI~~~~dv 276 (352)
T PRK05437 200 KETAKRLADAGVKAIDVAGAGGTSW--AAIENYRARDDRLASYFADWGIPTAQSLLEARSLL-PDLPIIASGGIRNGLDI 276 (352)
T ss_pred HHHHHHHHHcCCCEEEECCCCCCCc--cchhhhhhhccccccccccccCCHHHHHHHHHHhc-CCCeEEEECCCCCHHHH
Confidence 4666778889999999988654110 0000 0 11222223322 46898874444445554
Q ss_pred HHHHHHHHhCCCCEEEEcCCCCCC---CCHHHHHHHHHHHHhc
Q 018253 143 IHATEQGFAVGMHAALHINPYYGK---TSLEGLISHFDSVLSM 182 (359)
Q Consensus 143 i~la~~a~~~Gadav~v~pP~y~~---~s~~~l~~yf~~Ia~a 182 (359)
.+. ..+|||++.+..|++.. ...+++.++++.+.+.
T Consensus 277 ~k~----l~~GAd~v~ig~~~l~~~~~~g~~~v~~~i~~~~~e 315 (352)
T PRK05437 277 AKA----LALGADAVGMAGPFLKAALEGGEEAVIELIEQWIEE 315 (352)
T ss_pred HHH----HHcCCCEEEEhHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 443 34799999999998754 2467788888888765
No 173
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).
Probab=90.06 E-value=1.9 Score=39.65 Aligned_cols=75 Identities=23% Similarity=0.313 Sum_probs=55.0
Q ss_pred HHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCCCHHHHHHHHHHHHhCCCCEEEEcC
Q 018253 82 DDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHIN 161 (359)
Q Consensus 82 ~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~st~~ai~la~~a~~~Gadav~v~p 161 (359)
..+++.+.+.|++.+++...+.++.... ...++++.+.+.. ++||+++=|-.+.++..++ .+.|||++++-.
T Consensus 148 ~~~~~~~~~~g~~~ii~~~~~~~g~~~g--~~~~~i~~i~~~~--~ipvia~GGi~~~~di~~~----~~~Gadgv~ig~ 219 (230)
T TIGR00007 148 EELAKRLEELGLEGIIYTDISRDGTLSG--PNFELTKELVKAV--NVPVIASGGVSSIDDLIAL----KKLGVYGVIVGK 219 (230)
T ss_pred HHHHHHHHhCCCCEEEEEeecCCCCcCC--CCHHHHHHHHHhC--CCCEEEeCCCCCHHHHHHH----HHCCCCEEEEeH
Confidence 4577777899999999988887776543 2366666766653 5899998877777776553 348999999975
Q ss_pred CCC
Q 018253 162 PYY 164 (359)
Q Consensus 162 P~y 164 (359)
-.|
T Consensus 220 a~~ 222 (230)
T TIGR00007 220 ALY 222 (230)
T ss_pred HHH
Confidence 544
No 174
>TIGR00222 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase. Members of this family are 3-methyl-2-oxobutanoate hydroxymethyltransferase, the first enzyme of the pantothenate biosynthesis pathway. An alternate name is ketopantoate hydroxymethyltransferase.
Probab=90.03 E-value=2.3 Score=40.49 Aligned_cols=84 Identities=12% Similarity=0.161 Sum_probs=55.0
Q ss_pred EEeeecCCCCCCCCCHHHHHHHHHHHHH-CCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecC------
Q 018253 63 ITAIKTPYLPDGRFDLEAYDDLVNMQIV-NGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTG------ 135 (359)
Q Consensus 63 ~~al~TPF~~dg~ID~~~l~~li~~li~-~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg------ 135 (359)
+...-.||..-+ |.+..-+.+.++++ .|++++=+=|+ .|....++...+ ..+||+.++|
T Consensus 78 ~vv~DmPf~sy~--~~e~a~~na~rl~~eaGa~aVkiEgg---------~~~~~~i~~l~~---~gIpV~gHiGltPq~a 143 (263)
T TIGR00222 78 LIVTDLPFMSYA--TPEQALKNAARVMQETGANAVKLEGG---------EWLVETVQMLTE---RGVPVVGHLGLTPQSV 143 (263)
T ss_pred eEEeCCCcCCCC--CHHHHHHHHHHHHHHhCCeEEEEcCc---------HhHHHHHHHHHH---CCCCEEEecCCCceeE
Confidence 334557887544 35555555556666 99999999885 444455544443 4688883322
Q ss_pred ------------CCCHHHHHHHHHHHHhCCCCEEEEc
Q 018253 136 ------------SNSTREAIHATEQGFAVGMHAALHI 160 (359)
Q Consensus 136 ------------~~st~~ai~la~~a~~~Gadav~v~ 160 (359)
..+.+++++.++..+++||+++++-
T Consensus 144 ~~~ggy~~qgrt~~~a~~~i~~A~a~e~AGA~~ivlE 180 (263)
T TIGR00222 144 NILGGYKVQGKDEEAAKKLLEDALALEEAGAQLLVLE 180 (263)
T ss_pred eecCCeeecCCCHHHHHHHHHHHHHHHHcCCCEEEEc
Confidence 1125578888999999999988774
No 175
>PRK12330 oxaloacetate decarboxylase; Provisional
Probab=90.01 E-value=4.9 Score=41.83 Aligned_cols=99 Identities=9% Similarity=0.128 Sum_probs=77.9
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCCCHHHHHHHHHHHHhCCC
Q 018253 75 RFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGM 154 (359)
Q Consensus 75 ~ID~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~st~~ai~la~~a~~~Ga 154 (359)
.-|.+-+.++++.+.+.|++.|.+.-|+|= |++++-.++++.+.+.++.++||=+++ +++.--++.-+-.|.++||
T Consensus 151 ~~t~e~~~~~a~~l~~~Gad~I~IkDtaGl---l~P~~~~~LV~~Lk~~~~~~ipI~~H~-Hnt~GlA~An~laAieAGa 226 (499)
T PRK12330 151 IHTVEGFVEQAKRLLDMGADSICIKDMAAL---LKPQPAYDIVKGIKEACGEDTRINLHC-HSTTGVTLVSLMKAIEAGV 226 (499)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEeCCCccC---CCHHHHHHHHHHHHHhCCCCCeEEEEe-CCCCCcHHHHHHHHHHcCC
Confidence 458999999999999999999999999994 899999999999998876578887766 4567778888889999999
Q ss_pred CEEEE-cCCCCCCC---CHHHHHHHHH
Q 018253 155 HAALH-INPYYGKT---SLEGLISHFD 177 (359)
Q Consensus 155 dav~v-~pP~y~~~---s~~~l~~yf~ 177 (359)
|.+=. +.+.-..+ +-++++..++
T Consensus 227 d~vDtai~Glg~~aGn~atE~vv~~L~ 253 (499)
T PRK12330 227 DVVDTAISSMSLGPGHNPTESLVEMLE 253 (499)
T ss_pred CEEEeecccccccccchhHHHHHHHHH
Confidence 98844 33433333 3355555444
No 176
>PF01207 Dus: Dihydrouridine synthase (Dus); InterPro: IPR001269 Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 (P53759 from SWISSPROT) from Saccharomyces cerevisiae (Baker's yeast) acts on pre-tRNA-Phe, while Dus 2 (P53720 from SWISSPROT) acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD []. Some family members may be targeted to the mitochondria and even have a role in mitochondria []. ; GO: 0017150 tRNA dihydrouridine synthase activity, 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing, 0055114 oxidation-reduction process; PDB: 1VHN_A 3B0P_A 3B0V_D 3B0U_Y.
Probab=89.97 E-value=0.79 Score=44.62 Aligned_cols=84 Identities=18% Similarity=0.143 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCCCHHHHHHHHHHHHhCCCCEE
Q 018253 78 LEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAA 157 (359)
Q Consensus 78 ~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~st~~ai~la~~a~~~Gadav 157 (359)
.+.+..+++.+.+.|++.|.|=|-|.+-.+-... .-+.+..+++.++ +|||++=+-.|.+++.+..+. .|+|+|
T Consensus 137 ~~~~~~~~~~l~~~G~~~i~vH~Rt~~q~~~~~a-~w~~i~~i~~~~~--ipvi~NGdI~s~~d~~~~~~~---tg~dgv 210 (309)
T PF01207_consen 137 PEETIEFARILEDAGVSAITVHGRTRKQRYKGPA-DWEAIAEIKEALP--IPVIANGDIFSPEDAERMLEQ---TGADGV 210 (309)
T ss_dssp CHHHHHHHHHHHHTT--EEEEECS-TTCCCTS----HHHHHHCHHC-T--SEEEEESS--SHHHHHHHCCC---H-SSEE
T ss_pred hhHHHHHHHHhhhcccceEEEecCchhhcCCccc-chHHHHHHhhccc--ceeEEcCccCCHHHHHHHHHh---cCCcEE
Confidence 5678889999999999999999988877776633 3444456667665 999998777788888776553 499999
Q ss_pred EEcCCCCCCC
Q 018253 158 LHINPYYGKT 167 (359)
Q Consensus 158 ~v~pP~y~~~ 167 (359)
|+.--.+..|
T Consensus 211 MigRgal~nP 220 (309)
T PF01207_consen 211 MIGRGALGNP 220 (309)
T ss_dssp EESHHHCC-C
T ss_pred EEchhhhhcC
Confidence 9975544444
No 177
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed
Probab=89.92 E-value=3.5 Score=40.70 Aligned_cols=89 Identities=12% Similarity=0.066 Sum_probs=65.3
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEccCc----cCcCCCCHHHHHHHHHHHHHhhCC---CcEEEEecCCC-CHHHHHHHH
Q 018253 75 RFDLEAYDDLVNMQIVNGAEGMIVGGTT----GEGQLMSWDEHIMLIGHTVNCFGA---SVKVIGNTGSN-STREAIHAT 146 (359)
Q Consensus 75 ~ID~~~l~~li~~li~~Gv~Gl~v~Gst----GE~~~LT~~Er~~li~~~v~~~~g---rvpViagvg~~-st~~ai~la 146 (359)
+=..+.+.+.++.+ ..++++|-++=+. |....-..+.-.++++.+++.++. ++||++=++.. +.++..+.+
T Consensus 153 ~~~~~d~~~~~~~~-~~~ad~lelN~scP~~~g~~~~~~~~~~~eiv~aVr~~~~~~~~~~PV~vKlsp~~~~~~~~~ia 231 (344)
T PRK05286 153 EDAVDDYLICLEKL-YPYADYFTVNISSPNTPGLRDLQYGEALDELLAALKEAQAELHGYVPLLVKIAPDLSDEELDDIA 231 (344)
T ss_pred ccCHHHHHHHHHHH-HhhCCEEEEEccCCCCCCcccccCHHHHHHHHHHHHHHHhccccCCceEEEeCCCCCHHHHHHHH
Confidence 34567788888876 4479998886432 333333455566788888887753 58999988744 345799999
Q ss_pred HHHHhCCCCEEEEcCCCC
Q 018253 147 EQGFAVGMHAALHINPYY 164 (359)
Q Consensus 147 ~~a~~~Gadav~v~pP~y 164 (359)
+.+++.|+|++.+.....
T Consensus 232 ~~l~~~Gadgi~~~nt~~ 249 (344)
T PRK05286 232 DLALEHGIDGVIATNTTL 249 (344)
T ss_pred HHHHHhCCcEEEEeCCcc
Confidence 999999999999998664
No 178
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=89.90 E-value=5.7 Score=39.20 Aligned_cols=90 Identities=9% Similarity=0.004 Sum_probs=62.1
Q ss_pred CCCHHHHHHHHH-------HHHHCCCCEEEEccCcc----CcCCC-----------CHHHHHHHHHHHHHhhCCC--cEE
Q 018253 75 RFDLEAYDDLVN-------MQIVNGAEGMIVGGTTG----EGQLM-----------SWDEHIMLIGHTVNCFGAS--VKV 130 (359)
Q Consensus 75 ~ID~~~l~~li~-------~li~~Gv~Gl~v~GstG----E~~~L-----------T~~Er~~li~~~v~~~~gr--vpV 130 (359)
.+..+.++++++ +..++|.|||=+.+..| +|.+= |.+-|.+++..+++.+... .||
T Consensus 131 ~mt~eeI~~ii~~f~~aA~~a~~aGfDgVeih~ahGyLl~qFlSp~~N~RtD~yGGslenR~Rf~~eii~~ir~~~~~~v 210 (337)
T PRK13523 131 EMTKEQIKETVLAFKQAAVRAKEAGFDVIEIHGAHGYLINEFLSPLSNKRTDEYGGSPENRYRFLREIIDAVKEVWDGPL 210 (337)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEccccchHHHHhcCCccCCcCCCCCCCHHHHHHHHHHHHHHHHHhcCCCe
Confidence 356666666655 45569999998887643 22111 5677888777777765443 355
Q ss_pred EEecC-------CCCHHHHHHHHHHHHhCCCCEEEEcCCCC
Q 018253 131 IGNTG-------SNSTREAIHATEQGFAVGMHAALHINPYY 164 (359)
Q Consensus 131 iagvg-------~~st~~ai~la~~a~~~Gadav~v~pP~y 164 (359)
.+=++ +.+.+|++++++..++.|+|.+-+....|
T Consensus 211 ~vRis~~d~~~~G~~~~e~~~i~~~l~~~gvD~i~vs~g~~ 251 (337)
T PRK13523 211 FVRISASDYHPGGLTVQDYVQYAKWMKEQGVDLIDVSSGAV 251 (337)
T ss_pred EEEecccccCCCCCCHHHHHHHHHHHHHcCCCEEEeCCCCC
Confidence 54333 35789999999999999999998876544
No 179
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=89.86 E-value=2.8 Score=42.03 Aligned_cols=111 Identities=15% Similarity=0.152 Sum_probs=85.3
Q ss_pred CCceEEeeecCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCCC
Q 018253 59 ALRLITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNS 138 (359)
Q Consensus 59 ~~Gi~~al~TPF~~dg~ID~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~s 138 (359)
-.|+.+.+- +- +.++.|.+-+.++++...+.|++.|.++-|+| .+++++-.++++.+.+.. .+|+=++. +++
T Consensus 127 ~~G~~v~~~-~e-d~~r~~~~~l~~~~~~~~~~Ga~~I~l~DT~G---~~~P~~v~~lv~~l~~~~--~~~l~~H~-Hnd 198 (378)
T PRK11858 127 DHGLYVSFS-AE-DASRTDLDFLIEFAKAAEEAGADRVRFCDTVG---ILDPFTMYELVKELVEAV--DIPIEVHC-HND 198 (378)
T ss_pred HCCCeEEEE-ec-cCCCCCHHHHHHHHHHHHhCCCCEEEEeccCC---CCCHHHHHHHHHHHHHhc--CCeEEEEe-cCC
Confidence 456554443 22 35679999999999999999999999999998 789999999999998876 46765554 678
Q ss_pred HHHHHHHHHHHHhCCCCEEEEcCCCCC----CCCHHHHHHHHH
Q 018253 139 TREAIHATEQGFAVGMHAALHINPYYG----KTSLEGLISHFD 177 (359)
Q Consensus 139 t~~ai~la~~a~~~Gadav~v~pP~y~----~~s~~~l~~yf~ 177 (359)
..-++..+-.|.++||+.+-..---.. ..+-++++.+.+
T Consensus 199 ~GlA~AN~laAv~aGa~~vd~tv~GlGeraGNa~lE~vv~~L~ 241 (378)
T PRK11858 199 FGMATANALAGIEAGAKQVHTTVNGLGERAGNAALEEVVMALK 241 (378)
T ss_pred cCHHHHHHHHHHHcCCCEEEEeeccccccccCccHHHHHHHHH
Confidence 888999999999999998866544332 244566665554
No 180
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=89.82 E-value=12 Score=34.31 Aligned_cols=138 Identities=12% Similarity=0.147 Sum_probs=83.7
Q ss_pred CCCCHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCCCHHHHHHHHHHHHhCC
Q 018253 74 GRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVG 153 (359)
Q Consensus 74 g~ID~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~st~~ai~la~~a~~~G 153 (359)
..+..+...++++.|.+.|++-|=+. ++..+.+++..+-+ +.+.... .++.+ ......++.-...+.+.+.|
T Consensus 9 ~~~~~~~k~~i~~~L~~~Gv~~iEvg-----~~~~~~~~~~~v~~-~~~~~~~-~~~~~-~~~~~~~~i~~~~~~~~~~g 80 (237)
T PF00682_consen 9 VAFSTEEKLEIAKALDEAGVDYIEVG-----FPFASEDDFEQVRR-LREALPN-ARLQA-LCRANEEDIERAVEAAKEAG 80 (237)
T ss_dssp TT--HHHHHHHHHHHHHHTTSEEEEE-----HCTSSHHHHHHHHH-HHHHHHS-SEEEE-EEESCHHHHHHHHHHHHHTT
T ss_pred CCcCHHHHHHHHHHHHHhCCCEEEEc-----ccccCHHHHHHhhh-hhhhhcc-cccce-eeeehHHHHHHHHHhhHhcc
Confidence 34778889999999999999998766 66677777766654 4444333 33332 33334444333366778899
Q ss_pred CCEEEEcCCCCC-------CCCHHHHHHHHHHHHh----cCCeEEEeCCCCCCCCCCHHHHHHHh----c-CCCeEEEec
Q 018253 154 MHAALHINPYYG-------KTSLEGLISHFDSVLS----MGPTIIYNVPSRTGQDIPPRVIHTMA----Q-SPNLAGVKE 217 (359)
Q Consensus 154 adav~v~pP~y~-------~~s~~~l~~yf~~Ia~----a~PiiiYn~P~~tg~~ls~e~l~~La----~-~pnivGiK~ 217 (359)
+|.+-+..|.-- ..+.++..+-..++.+ ...-+-++.+..+. .+++.+.+++ + -+..+.++|
T Consensus 81 ~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~v~~ak~~g~~v~~~~~~~~~--~~~~~~~~~~~~~~~~g~~~i~l~D 158 (237)
T PF00682_consen 81 IDIIRIFISVSDLHIRKNLNKSREEALERIEEAVKYAKELGYEVAFGCEDASR--TDPEELLELAEALAEAGADIIYLAD 158 (237)
T ss_dssp SSEEEEEEETSHHHHHHHTCSHHHHHHHHHHHHHHHHHHTTSEEEEEETTTGG--SSHHHHHHHHHHHHHHT-SEEEEEE
T ss_pred CCEEEecCcccHHHHHHhhcCCHHHHHHHHHHHHHHHHhcCCceEeCcccccc--ccHHHHHHHHHHHHHcCCeEEEeeC
Confidence 999887655421 2233454544444443 24555666665543 4566555554 3 478899999
Q ss_pred cCch
Q 018253 218 CVGN 221 (359)
Q Consensus 218 ss~d 221 (359)
+.|-
T Consensus 159 t~G~ 162 (237)
T PF00682_consen 159 TVGI 162 (237)
T ss_dssp TTS-
T ss_pred ccCC
Confidence 9986
No 181
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=89.81 E-value=3.3 Score=40.35 Aligned_cols=118 Identities=15% Similarity=0.242 Sum_probs=71.6
Q ss_pred HHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCCCHHHHHHHHHHHHhCCCCEEEEcCC
Q 018253 83 DLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINP 162 (359)
Q Consensus 83 ~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~st~~ai~la~~a~~~Gadav~v~pP 162 (359)
++.+.+.+.|+|+|++-|....++.-.. --..++..+++.+ ++|||+.=|-.+-++ +..+.++|||+|++-..
T Consensus 120 ~~a~~a~~~GaD~Ivv~g~eagGh~g~~-~~~~ll~~v~~~~--~iPviaaGGI~~~~~----~~~al~~GA~gV~iGt~ 192 (307)
T TIGR03151 120 ALAKRMEKAGADAVIAEGMESGGHIGEL-TTMALVPQVVDAV--SIPVIAAGGIADGRG----MAAAFALGAEAVQMGTR 192 (307)
T ss_pred HHHHHHHHcCCCEEEEECcccCCCCCCC-cHHHHHHHHHHHh--CCCEEEECCCCCHHH----HHHHHHcCCCEeecchH
Confidence 3456777899999998655333332111 1255666666655 489887433333333 34444589999999987
Q ss_pred CCCCCCHHHHHHHHHHHH-hc--CCeEEEeCC-CCCCCCCCHHHHHHHhc
Q 018253 163 YYGKTSLEGLISHFDSVL-SM--GPTIIYNVP-SRTGQDIPPRVIHTMAQ 208 (359)
Q Consensus 163 ~y~~~s~~~l~~yf~~Ia-~a--~PiiiYn~P-~~tg~~ls~e~l~~La~ 208 (359)
+.... +..+-..|++.. ++ ..+++...+ ++.+..+..++..++.+
T Consensus 193 f~~t~-Es~~~~~~k~~l~~~~~~dt~~t~~~~G~~~R~l~n~~~~~~~~ 241 (307)
T TIGR03151 193 FLCAK-ECNVHPNYKEKVLKAKDRDTVVTGASTGHPVRVLKNKLTRKYQE 241 (307)
T ss_pred Hhccc-ccCCCHHHHHHHHhCCCCCEEEEecCCCCceeeecCHHHHHHHh
Confidence 66432 234556666654 43 467766643 34556788888888754
No 182
>PLN02424 ketopantoate hydroxymethyltransferase
Probab=89.80 E-value=2.9 Score=41.07 Aligned_cols=56 Identities=14% Similarity=0.227 Sum_probs=28.8
Q ss_pred cCCCCCCCCCHHHHHHHHHHHH-HCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecC
Q 018253 68 TPYLPDGRFDLEAYDDLVNMQI-VNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTG 135 (359)
Q Consensus 68 TPF~~dg~ID~~~l~~li~~li-~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg 135 (359)
.||- ....+.+..-+.+.+++ +.|++++=+=|++ .++...++..+ ...+||+.++|
T Consensus 103 mPfg-SY~~s~e~av~nA~rl~~eaGa~aVKlEGg~--------~~~~~~I~~l~---~~GIPV~gHiG 159 (332)
T PLN02424 103 LPFG-SYESSTDQAVESAVRMLKEGGMDAVKLEGGS--------PSRVTAAKAIV---EAGIAVMGHVG 159 (332)
T ss_pred CCCC-CCCCCHHHHHHHHHHHHHHhCCcEEEECCCc--------HHHHHHHHHHH---HcCCCEEEeec
Confidence 3553 22334444445555553 4777777766654 34444444443 33567765554
No 183
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=89.76 E-value=3.9 Score=37.73 Aligned_cols=43 Identities=12% Similarity=0.037 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHhCCCCEEEEcCCCCCCCCHHHHHHHHHHHHhc
Q 018253 139 TREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSM 182 (359)
Q Consensus 139 t~~ai~la~~a~~~Gadav~v~pP~y~~~s~~~l~~yf~~Ia~a 182 (359)
.+...+.++.+++.|.+. .+..+.....+.+.+.++++.+.+.
T Consensus 107 ~~~~~~~v~~ak~~g~~v-~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (237)
T PF00682_consen 107 LERIEEAVKYAKELGYEV-AFGCEDASRTDPEELLELAEALAEA 149 (237)
T ss_dssp HHHHHHHHHHHHHTTSEE-EEEETTTGGSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCce-EeCccccccccHHHHHHHHHHHHHc
Confidence 334444455555555543 3333444445555555555555554
No 184
>PRK07226 fructose-bisphosphate aldolase; Provisional
Probab=89.75 E-value=6.2 Score=37.44 Aligned_cols=93 Identities=15% Similarity=0.163 Sum_probs=63.4
Q ss_pred CHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEE--ecCCCCHHHHHHHHHHHHhCCC
Q 018253 77 DLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIG--NTGSNSTREAIHATEQGFAVGM 154 (359)
Q Consensus 77 D~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpVia--gvg~~st~~ai~la~~a~~~Ga 154 (359)
|.+.+....+...+.|+|-+=.. .+| -.++++.+++. .++||++ |+...+.++++++++.+.++||
T Consensus 158 ~~~~i~~a~~~a~e~GAD~vKt~-~~~---------~~~~l~~~~~~--~~ipV~a~GGi~~~~~~~~l~~v~~~~~aGA 225 (267)
T PRK07226 158 DPEVVAHAARVAAELGADIVKTN-YTG---------DPESFREVVEG--CPVPVVIAGGPKTDTDREFLEMVRDAMEAGA 225 (267)
T ss_pred cHHHHHHHHHHHHHHCCCEEeeC-CCC---------CHHHHHHHHHh--CCCCEEEEeCCCCCCHHHHHHHHHHHHHcCC
Confidence 44445555565666777766332 111 12445555443 2567654 5655578999999999999999
Q ss_pred CEEEEcCCCCCCCCHHHHHHHHHHHHh
Q 018253 155 HAALHINPYYGKTSLEGLISHFDSVLS 181 (359)
Q Consensus 155 dav~v~pP~y~~~s~~~l~~yf~~Ia~ 181 (359)
+++.+..-.+...++++..+-++.+..
T Consensus 226 ~Gis~gr~i~~~~~p~~~~~~l~~~v~ 252 (267)
T PRK07226 226 AGVAVGRNVFQHEDPEAITRAISAVVH 252 (267)
T ss_pred cEEehhhhhhcCCCHHHHHHHHHHHHh
Confidence 999999888888888888877777764
No 185
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=89.48 E-value=18 Score=33.76 Aligned_cols=180 Identities=18% Similarity=0.186 Sum_probs=102.1
Q ss_pred cCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHH----HHH-------HHHHHHHHhhCCCcEEEEecCC
Q 018253 68 TPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWD----EHI-------MLIGHTVNCFGASVKVIGNTGS 136 (359)
Q Consensus 68 TPF~~dg~ID~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~----Er~-------~li~~~v~~~~grvpViagvg~ 136 (359)
-||---|.-|.+.+.+.++.+.+. ++.+=++=..+.-..=... -.+ ++++.+.+. -++|++.-+--
T Consensus 7 i~y~~~G~p~~~~~~~~~~~l~~~-ad~iElgip~sdp~adG~~i~~~~~~a~~~g~~~~v~~vr~~--~~~Pl~lM~y~ 83 (244)
T PRK13125 7 VVYLTAGYPNVESFKEFIIGLVEL-VDILELGIPPKYPKYDGPVIRKSHRKVKGLDIWPLLEEVRKD--VSVPIILMTYL 83 (244)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHhh-CCEEEECCCCCCCCCCCHHHHHHHHHHHHcCcHHHHHHHhcc--CCCCEEEEEec
Confidence 344456888999999999988777 9987766555443221111 111 344444433 25787543322
Q ss_pred CC-HHHHHHHHHHHHhCCCCEEEEcCCCCCCCCHHHHHHHHHHHHhc-C-CeEEEeCCCCCCCCCCHHHHHHHh-cCCCe
Q 018253 137 NS-TREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSM-G-PTIIYNVPSRTGQDIPPRVIHTMA-QSPNL 212 (359)
Q Consensus 137 ~s-t~~ai~la~~a~~~Gadav~v~pP~y~~~s~~~l~~yf~~Ia~a-~-PiiiYn~P~~tg~~ls~e~l~~La-~~pni 212 (359)
+. ..+-.++++.++++|+|++.+..=.+ .+.+++.++++.+.+. + +++.-| |. -+.+.++.++ ..+.+
T Consensus 84 n~~~~~~~~~i~~~~~~Gadgvii~dlp~--e~~~~~~~~~~~~~~~Gl~~~~~v~-p~-----T~~e~l~~~~~~~~~~ 155 (244)
T PRK13125 84 EDYVDSLDNFLNMARDVGADGVLFPDLLI--DYPDDLEKYVEIIKNKGLKPVFFTS-PK-----FPDLLIHRLSKLSPLF 155 (244)
T ss_pred chhhhCHHHHHHHHHHcCCCEEEECCCCC--CcHHHHHHHHHHHHHcCCCEEEEEC-CC-----CCHHHHHHHHHhCCCE
Confidence 22 34556678889999999999852111 1235677777777765 4 455444 42 3567888877 47777
Q ss_pred E--EEeccCch-------h---hHhhhhCCceEEEecC---CchhhhhhhhcCCceeecccc
Q 018253 213 A--GVKECVGN-------D---RVEHYTGNGIVVWSGN---DDQCHDARWNHGATGVISVTS 259 (359)
Q Consensus 213 v--GiK~ss~d-------~---~l~~~~~~~~~v~~G~---d~~~~~~~l~~Ga~G~is~~a 259 (359)
+ ++.-..+. . +++++.. +..+..|. ...-.......|+||++.|++
T Consensus 156 l~msv~~~~g~~~~~~~~~~i~~lr~~~~-~~~i~v~gGI~~~e~i~~~~~~gaD~vvvGSa 216 (244)
T PRK13125 156 IYYGLRPATGVPLPVSVERNIKRVRNLVG-NKYLVVGFGLDSPEDARDALSAGADGVVVGTA 216 (244)
T ss_pred EEEEeCCCCCCCchHHHHHHHHHHHHhcC-CCCEEEeCCcCCHHHHHHHHHcCCCEEEECHH
Confidence 6 33322221 1 2233332 22234332 212233335799999999865
No 186
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=89.46 E-value=3.2 Score=41.33 Aligned_cols=110 Identities=15% Similarity=0.093 Sum_probs=84.7
Q ss_pred CCceEEeeecCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCCC
Q 018253 59 ALRLITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNS 138 (359)
Q Consensus 59 ~~Gi~~al~TPF~~dg~ID~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~s 138 (359)
-.|+.+. +++- +.++.|.+-+.++++...+.|++.|.+.-|+| .+++++-.++++.+.+.. .+|+=++. +++
T Consensus 124 ~~g~~v~-~~~e-d~~r~~~~~l~~~~~~~~~~Ga~~i~l~DT~G---~~~P~~v~~lv~~l~~~~--~v~l~~H~-HNd 195 (365)
T TIGR02660 124 DRGLFVS-VGGE-DASRADPDFLVELAEVAAEAGADRFRFADTVG---ILDPFSTYELVRALRQAV--DLPLEMHA-HND 195 (365)
T ss_pred hCCCEEE-Eeec-CCCCCCHHHHHHHHHHHHHcCcCEEEEcccCC---CCCHHHHHHHHHHHHHhc--CCeEEEEe-cCC
Confidence 4565544 3333 35679999999999999999999999999999 889999999999988876 36765544 678
Q ss_pred HHHHHHHHHHHHhCCCCEEEEcCCCCC----CCCHHHHHHHH
Q 018253 139 TREAIHATEQGFAVGMHAALHINPYYG----KTSLEGLISHF 176 (359)
Q Consensus 139 t~~ai~la~~a~~~Gadav~v~pP~y~----~~s~~~l~~yf 176 (359)
..-++..+-.|.++||+.+-..---.. ..+-++++.+.
T Consensus 196 ~GlA~ANalaA~~aGa~~vd~tl~GiGeraGN~~lE~lv~~L 237 (365)
T TIGR02660 196 LGMATANTLAAVRAGATHVNTTVNGLGERAGNAALEEVAMAL 237 (365)
T ss_pred CChHHHHHHHHHHhCCCEEEEEeeccccccccCCHHHHHHHH
Confidence 889999999999999998866543332 24556666655
No 187
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=89.46 E-value=1.8 Score=42.10 Aligned_cols=82 Identities=18% Similarity=0.169 Sum_probs=55.1
Q ss_pred HHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCCCHHHHHHHHHHHHhCCCCEEEEc
Q 018253 81 YDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHI 160 (359)
Q Consensus 81 l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~st~~ai~la~~a~~~Gadav~v~ 160 (359)
..++++.+.+.|++.|.+-|-+.... .+..-..+.++.+.+.+ ++|||+.=+-.+.+++.+..+ ..|+|+||+.
T Consensus 149 ~~~~a~~l~~~G~d~i~vh~r~~~~~-~~~~~~~~~i~~i~~~~--~ipvi~nGgI~~~~da~~~l~---~~gad~Vmig 222 (319)
T TIGR00737 149 AVEAARIAEDAGAQAVTLHGRTRAQG-YSGEANWDIIARVKQAV--RIPVIGNGDIFSPEDAKAMLE---TTGCDGVMIG 222 (319)
T ss_pred HHHHHHHHHHhCCCEEEEEccccccc-CCCchhHHHHHHHHHcC--CCcEEEeCCCCCHHHHHHHHH---hhCCCEEEEC
Confidence 55678888899999999977554322 22222345666666655 389887555556666655553 3699999999
Q ss_pred CCCCCCCC
Q 018253 161 NPYYGKTS 168 (359)
Q Consensus 161 pP~y~~~s 168 (359)
-+.+..|.
T Consensus 223 R~~l~~P~ 230 (319)
T TIGR00737 223 RGALGNPW 230 (319)
T ss_pred hhhhhCCh
Confidence 88886664
No 188
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=89.45 E-value=16 Score=34.36 Aligned_cols=137 Identities=7% Similarity=0.016 Sum_probs=79.7
Q ss_pred HHHHHHHHHHHHCCCCEEEE-ccCccCcC--CCCHHHHHHHHHHHHHhhCCCcEEEEe------cCCCC-------HHHH
Q 018253 79 EAYDDLVNMQIVNGAEGMIV-GGTTGEGQ--LMSWDEHIMLIGHTVNCFGASVKVIGN------TGSNS-------TREA 142 (359)
Q Consensus 79 ~~l~~li~~li~~Gv~Gl~v-~GstGE~~--~LT~~Er~~li~~~v~~~~grvpViag------vg~~s-------t~~a 142 (359)
..+.+.++...+.|.+++=+ .+...++. ..|.++..++.+.+.+. +.+.+.+. ..+.+ .+..
T Consensus 10 ~~l~~~l~~a~~~G~d~vEl~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~i~~~~~~~~~~~~~~~~~r~~~~~~~ 87 (279)
T cd00019 10 FGLENALKRAKEIGFDTVAMFLGNPRSWLSRPLKKERAEKFKAIAEEG--PSICLSVHAPYLINLASPDKEKREKSIERL 87 (279)
T ss_pred ccHHHHHHHHHHcCCCEEEEEcCCCCccCCCCCCHHHHHHHHHHHHHc--CCCcEEEEcCceeccCCCCHHHHHHHHHHH
Confidence 56788889999999999743 23333333 23667766666665554 22233332 22222 3345
Q ss_pred HHHHHHHHhCCCCEEEEcCCCCCCCC-H---HHHHHHHHHHHhc-----CCeEEEeCCCCC-CCCCCHHHHHHHh-c---
Q 018253 143 IHATEQGFAVGMHAALHINPYYGKTS-L---EGLISHFDSVLSM-----GPTIIYNVPSRT-GQDIPPRVIHTMA-Q--- 208 (359)
Q Consensus 143 i~la~~a~~~Gadav~v~pP~y~~~s-~---~~l~~yf~~Ia~a-----~PiiiYn~P~~t-g~~ls~e~l~~La-~--- 208 (359)
.+.++.|+++|++.+.+.+..+...+ + +.+.+-++.+++. +.+.+=|.+... ...-+++.+.+|. +
T Consensus 88 ~~~i~~A~~lG~~~v~~~~g~~~~~~~~~~~~~~~~~l~~l~~~a~~~gi~l~lEn~~~~~~~~~~t~~~~~~li~~v~~ 167 (279)
T cd00019 88 KDEIERCEELGIRLLVFHPGSYLGQSKEEGLKRVIEALNELIDKAETKGVVIALETMAGQGNEIGSSFEELKEIIDLIKE 167 (279)
T ss_pred HHHHHHHHHcCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHhcCC
Confidence 77788889999998877666553222 2 3455667777653 356666665432 1335567777776 3
Q ss_pred CCCeEEEec
Q 018253 209 SPNLAGVKE 217 (359)
Q Consensus 209 ~pnivGiK~ 217 (359)
.|++.-+=|
T Consensus 168 ~~~~g~~lD 176 (279)
T cd00019 168 KPRVGVCID 176 (279)
T ss_pred CCCeEEEEE
Confidence 456543333
No 189
>TIGR00742 yjbN tRNA dihydrouridine synthase A. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=89.43 E-value=1.8 Score=42.37 Aligned_cols=86 Identities=14% Similarity=0.080 Sum_probs=57.4
Q ss_pred CHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHH-------HHHHHHHHHHhhCCCcEEEEecCCCCHHHHHHHHHHH
Q 018253 77 DLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDE-------HIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQG 149 (359)
Q Consensus 77 D~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~E-------r~~li~~~v~~~~grvpViagvg~~st~~ai~la~~a 149 (359)
+++.+..+++.+.+.|++.|.+=|-|.+..-++..+ .-+.+..+.+.+. ++|||++=+=.+.+++.+..
T Consensus 139 ~~~~~~~~~~~l~~~G~~~itvHgRt~~~qg~sg~~~~~~~~~~~~~i~~vk~~~~-~ipVi~NGdI~s~~da~~~l--- 214 (318)
T TIGR00742 139 SYEFLCDFVEIVSGKGCQNFIVHARKAWLSGLSPKENREIPPLRYERVYQLKKDFP-HLTIEINGGIKNSEQIKQHL--- 214 (318)
T ss_pred hHHHHHHHHHHHHHcCCCEEEEeCCchhhcCCCccccccCCchhHHHHHHHHHhCC-CCcEEEECCcCCHHHHHHHH---
Confidence 356677889999999999999999885333343322 2233444455442 69998754444666666644
Q ss_pred HhCCCCEEEEcCCCCCCCC
Q 018253 150 FAVGMHAALHINPYYGKTS 168 (359)
Q Consensus 150 ~~~Gadav~v~pP~y~~~s 168 (359)
+ |+|+||+.-..+..|.
T Consensus 215 -~-g~dgVMigRgal~nP~ 231 (318)
T TIGR00742 215 -S-HVDGVMVGREAYENPY 231 (318)
T ss_pred -h-CCCEEEECHHHHhCCH
Confidence 2 8999999988777653
No 190
>TIGR00126 deoC deoxyribose-phosphate aldolase. Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria.
Probab=89.41 E-value=12 Score=34.50 Aligned_cols=127 Identities=13% Similarity=0.079 Sum_probs=87.2
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCC-CcEE--EEec--CCCCHHHHHHHHHHH
Q 018253 75 RFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGA-SVKV--IGNT--GSNSTREAIHATEQG 149 (359)
Q Consensus 75 ~ID~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~g-rvpV--iagv--g~~st~~ai~la~~a 149 (359)
....+.++++++.-.+.|+.++.+... +. +.+.+..++ +++| ++|. |...++.-+..+++|
T Consensus 14 ~~t~~~i~~lc~~A~~~~~~avcv~p~-----------~v---~~a~~~l~~~~v~v~tVigFP~G~~~~~~K~~E~~~A 79 (211)
T TIGR00126 14 DTTEEDIITLCAQAKTYKFAAVCVNPS-----------YV---PLAKELLKGTEVRICTVVGFPLGASTTDVKLYETKEA 79 (211)
T ss_pred CCCHHHHHHHHHHHHhhCCcEEEeCHH-----------HH---HHHHHHcCCCCCeEEEEeCCCCCCCcHHHHHHHHHHH
Confidence 356788999999999999999987532 23 333333332 3444 4443 667788888999999
Q ss_pred HhCCCCEEEEcCCCC-C-CCCHHHHHHHHHHHHhc---CCeE-EEeCCCCCCCCCCHHHHHHHhc---CCCeEEEeccCc
Q 018253 150 FAVGMHAALHINPYY-G-KTSLEGLISHFDSVLSM---GPTI-IYNVPSRTGQDIPPRVIHTMAQ---SPNLAGVKECVG 220 (359)
Q Consensus 150 ~~~Gadav~v~pP~y-~-~~s~~~l~~yf~~Ia~a---~Pii-iYn~P~~tg~~ls~e~l~~La~---~pnivGiK~ss~ 220 (359)
.+.|||.+-++.++- . ....+.+.+-.++|.++ .|+. |+. ++. ++.+.+.+.++ .-..-.+|-|+|
T Consensus 80 v~~GAdEiDvv~n~g~l~~g~~~~v~~ei~~i~~~~~g~~lKvIlE----~~~-L~~~ei~~a~~ia~eaGADfvKTsTG 154 (211)
T TIGR00126 80 IKYGADEVDMVINIGALKDGNEEVVYDDIRAVVEACAGVLLKVIIE----TGL-LTDEEIRKACEICIDAGADFVKTSTG 154 (211)
T ss_pred HHcCCCEEEeecchHhhhCCcHHHHHHHHHHHHHHcCCCeEEEEEe----cCC-CCHHHHHHHHHHHHHhCCCEEEeCCC
Confidence 999999998887753 2 34667788888888875 4653 443 444 77676666553 356777898755
No 191
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=89.40 E-value=4.1 Score=38.18 Aligned_cols=87 Identities=17% Similarity=0.163 Sum_probs=61.2
Q ss_pred HHHHHHHHHHCCCCEEEEcc----CccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCCCHHHHHHHHHHHHhCCCCE
Q 018253 81 YDDLVNMQIVNGAEGMIVGG----TTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHA 156 (359)
Q Consensus 81 l~~li~~li~~Gv~Gl~v~G----stGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~st~~ai~la~~a~~~Gada 156 (359)
....++.+.+.|++.+++.+ +|.+++. .++++.+.+.+ .+|||++=|-.+.++..++.+. .|+|+
T Consensus 155 ~~~~~~~~~~~g~~~ii~~~i~~~g~~~g~d------~~~i~~~~~~~--~ipvia~GGv~s~~d~~~~~~~---~G~~g 223 (253)
T PRK02083 155 AVEWAKEVEELGAGEILLTSMDRDGTKNGYD------LELTRAVSDAV--NVPVIASGGAGNLEHFVEAFTE---GGADA 223 (253)
T ss_pred HHHHHHHHHHcCCCEEEEcCCcCCCCCCCcC------HHHHHHHHhhC--CCCEEEECCCCCHHHHHHHHHh---CCccE
Confidence 35556677789999998844 3455552 45666666655 5899997777778887765433 79999
Q ss_pred EEEcCCCCC-CCCHHHHHHHHHH
Q 018253 157 ALHINPYYG-KTSLEGLISHFDS 178 (359)
Q Consensus 157 v~v~pP~y~-~~s~~~l~~yf~~ 178 (359)
+++..=.|. ..+.+++.++.++
T Consensus 224 vivg~al~~~~~~~~~~~~~~~~ 246 (253)
T PRK02083 224 ALAASIFHFGEITIGELKAYLAE 246 (253)
T ss_pred EeEhHHHHcCCCCHHHHHHHHHH
Confidence 999877664 5677887777653
No 192
>PRK12858 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=89.27 E-value=7.4 Score=38.55 Aligned_cols=129 Identities=14% Similarity=0.053 Sum_probs=82.4
Q ss_pred CCceEEeeec-CC--CCCCCCCHHHHHHHHHHHHHCCCCEEEEccCcc--CcCCCCHHHHHHHHHHHHH-hhCCCcEEEE
Q 018253 59 ALRLITAIKT-PY--LPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTG--EGQLMSWDEHIMLIGHTVN-CFGASVKVIG 132 (359)
Q Consensus 59 ~~Gi~~al~T-PF--~~dg~ID~~~l~~li~~li~~Gv~Gl~v~GstG--E~~~LT~~Er~~li~~~v~-~~~grvpVia 132 (359)
-.|+|..+-. =+ +..|+++......-+++.++.|++++-++---| +...+ .+++.+.++.+.+ +-.-.+|+++
T Consensus 83 ~~GLil~~e~tg~d~t~~gr~~~~~~~~sve~a~~~GAdAVk~lv~~~~d~~~~~-~~~~~~~l~rv~~ec~~~giPlll 161 (340)
T PRK12858 83 NCGLLLSYEKTGYDATAPGRLPDLLDNWSVRRIKEAGADAVKLLLYYRPDEDDAI-NDRKHAFVERVGAECRANDIPFFL 161 (340)
T ss_pred CCCeEEEecccccccCCCCCCccccccccHHHHHHcCCCEEEEEEEeCCCcchHH-HHHHHHHHHHHHHHHHHcCCceEE
Confidence 4677777521 11 112345555566667888999999876665544 11112 2445544555554 4556799887
Q ss_pred ec--CC-------------CCHHHHHHHHHHHHh--CCCCEEEEcCCCCC-----------CCCHHHHHHHHHHHHhc--
Q 018253 133 NT--GS-------------NSTREAIHATEQGFA--VGMHAALHINPYYG-----------KTSLEGLISHFDSVLSM-- 182 (359)
Q Consensus 133 gv--g~-------------~st~~ai~la~~a~~--~Gadav~v~pP~y~-----------~~s~~~l~~yf~~Ia~a-- 182 (359)
-+ .. ...+-.++.+|.+.+ +|||-+=+-.|.-. -.++++..++|+++.++
T Consensus 162 E~l~y~~~~~~~~~~~~a~~~p~~V~~a~r~~~~~elGaDvlKve~p~~~~~veg~~~~~~~~~~~~~~~~f~~~~~a~~ 241 (340)
T PRK12858 162 EPLTYDGKGSDKKAEEFAKVKPEKVIKTMEEFSKPRYGVDVLKVEVPVDMKFVEGFDGFEEAYTQEEAFKLFREQSDATD 241 (340)
T ss_pred EEeccCCCccccccccccccCHHHHHHHHHHHhhhccCCeEEEeeCCCCcccccccccccccccHHHHHHHHHHHHhhCC
Confidence 41 11 245678888888885 99998888777432 13788899999999987
Q ss_pred CCeEEE
Q 018253 183 GPTIIY 188 (359)
Q Consensus 183 ~PiiiY 188 (359)
.|+++-
T Consensus 242 ~P~vvl 247 (340)
T PRK12858 242 LPFIFL 247 (340)
T ss_pred CCEEEE
Confidence 687775
No 193
>PLN02433 uroporphyrinogen decarboxylase
Probab=89.24 E-value=18 Score=35.66 Aligned_cols=88 Identities=15% Similarity=0.262 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHHhCCCCEEEEcCCCCCCCCHHHHHHHH----HHHHhc-------CCeEEEeCCCCCCCCCCHHHHHHHh
Q 018253 139 TREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHF----DSVLSM-------GPTIIYNVPSRTGQDIPPRVIHTMA 207 (359)
Q Consensus 139 t~~ai~la~~a~~~Gadav~v~pP~y~~~s~~~l~~yf----~~Ia~a-------~PiiiYn~P~~tg~~ls~e~l~~La 207 (359)
|+..+++++...++||+.+.+.-|.-.-.|+++..+|. ++|.+. .|++++. .|.. ..+..++
T Consensus 178 t~~~~~~~~~~ieaGa~~i~i~d~~~~~lsp~~f~ef~~P~~k~i~~~i~~~~~~~~~ilh~----cG~~---~~~~~~~ 250 (345)
T PLN02433 178 TDAVIEYVDYQIDAGAQVVQIFDSWAGHLSPVDFEEFSKPYLEKIVDEVKARHPDVPLILYA----NGSG---GLLERLA 250 (345)
T ss_pred HHHHHHHHHHHHHcCCCEEEEecCccccCCHHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEe----CCCH---HHHHHHH
Confidence 44567777877889999998888865556776665444 566553 2556654 3432 5677777
Q ss_pred cCC-CeEEEeccCchh-hHhhhhCCceEE
Q 018253 208 QSP-NLAGVKECVGND-RVEHYTGNGIVV 234 (359)
Q Consensus 208 ~~p-nivGiK~ss~d~-~l~~~~~~~~~v 234 (359)
+.+ +++++=.. .|. ..++..+++..+
T Consensus 251 ~~~~~~i~~d~~-~dl~e~~~~~g~~~~l 278 (345)
T PLN02433 251 GTGVDVIGLDWT-VDMADARRRLGSDVAV 278 (345)
T ss_pred hcCCCEEEcCCC-CCHHHHHHHhCCCeEE
Confidence 654 67665332 342 334444444433
No 194
>cd00537 MTHFR Methylenetetrahydrofolate reductase (MTHFR). 5,10-Methylenetetrahydrofolate is reduced to 5-methyltetrahydrofolate by methylenetetrahydrofolate reductase, a cytoplasmic, NAD(P)-dependent enzyme. 5-methyltetrahydrofolate is utilized by methionine synthase to convert homocysteine to methionine. The enzymatic mechanism is a ping-pong bi-bi mechanism, in which NAD(P)+ release precedes the binding of methylenetetrahydrofolate and the acceptor is free FAD. The family includes the 5,10-methylenetetrahydrofolate reductase EC:1.7.99.5 from prokaryotes and methylenetetrahydrofolate reductase EC: 1.5.1.20 from eukaryotes. The bacterial enzyme is a homotetramer and NADH is the preferred reductant while the eukaryotic enzyme is a homodimer and NADPH is the preferred reductant. In humans, there are several clinically significant mutations in MTHFR that result in hyperhomocysteinemia, which is a risk factor for the development of cardiovascular disease.
Probab=89.24 E-value=20 Score=33.93 Aligned_cols=128 Identities=13% Similarity=0.167 Sum_probs=76.1
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEc-cCccCc------CCCCHHHHHHHHHHHHHhhCCCcEEEE------ecCCCCHHHH
Q 018253 76 FDLEAYDDLVNMQIVNGAEGMIVG-GTTGEG------QLMSWDEHIMLIGHTVNCFGASVKVIG------NTGSNSTREA 142 (359)
Q Consensus 76 ID~~~l~~li~~li~~Gv~Gl~v~-GstGE~------~~LT~~Er~~li~~~v~~~~grvpVia------gvg~~st~~a 142 (359)
.+...++..+..+.+.|++.+++. |-.-.. ..-....=.+|++.+.+...+...+-+ +..+.+.+.-
T Consensus 70 ~n~~~l~~~L~~~~~~Gi~~iL~l~GD~~~~~~~~~~~~~~~~~a~~Li~~i~~~~~~~~~igva~yPe~hp~~~~~~~~ 149 (274)
T cd00537 70 RNRIELQSILLGAHALGIRNILALRGDPPKGGDQPGAKPVGFVYAVDLVELIRKENGGGFSIGVAAYPEGHPEAPSLEED 149 (274)
T ss_pred CCHHHHHHHHHHHHHCCCCeEEEeCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHhcCCCCccccccCCCcCCCCCCHHHH
Confidence 466999999999999999999888 422111 112333345556555543222221111 1123346666
Q ss_pred HHHHHHHHhCCCCEEEEcCCCCCCCCHHHHHHHHHHHHhc---CCeEEEeCCC-----------CCCCCCCHHHHHHHh
Q 018253 143 IHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSM---GPTIIYNVPS-----------RTGQDIPPRVIHTMA 207 (359)
Q Consensus 143 i~la~~a~~~Gadav~v~pP~y~~~s~~~l~~yf~~Ia~a---~PiiiYn~P~-----------~tg~~ls~e~l~~La 207 (359)
++..+.=.++||+.++.. |.| +.+.+.+|.+.+.+. .||+.==.|- ..|+.+|.+++++|.
T Consensus 150 ~~~L~~Ki~aGA~f~iTQ-~~f---d~~~~~~~~~~~~~~gi~vPIi~GI~p~~s~~~l~~~~~~~Gv~vP~~~~~~l~ 224 (274)
T cd00537 150 IKRLKRKVDAGADFIITQ-LFF---DNDAFLRFVDRCRAAGITVPIIPGIMPLTSYKQAKRFAKLCGVEIPDWLLERLE 224 (274)
T ss_pred HHHHHHHHHCCCCEEeec-ccc---cHHHHHHHHHHHHHcCCCCCEEeeccccCCHHHHHHHHHhhCCCCCHHHHHHHH
Confidence 666666677899865554 666 567888888888765 4765433332 225666666666654
No 195
>cd03307 Mta_CmuA_like MtaA_CmuA_like family. MtaA/CmuA, also MtsA, or methyltransferase 2 (MT2) MT2-A and MT2-M isozymes, are methylcobamide:Coenzyme M methyltransferases, which play a role in metabolic pathways of methane formation from various substrates, such as methylated amines and methanol. Coenzyme M, 2-mercaptoethylsulfonate or CoM, is methylated during methanogenesis in a reaction catalyzed by three proteins. A methyltransferase methylates the corrinoid cofactor, which is bound to a second polypeptide, a corrinoid protein. The methylated corrinoid protein then serves as a substrate for MT2-A and related enzymes, which methylate CoM.
Probab=89.19 E-value=12 Score=36.27 Aligned_cols=94 Identities=16% Similarity=0.154 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHHhCCCCEEEEcCCCCCCC--CHHHHH----HHHHHHHhc---CCeEEEeCCCCCCCCCCHHHHHHHhcC
Q 018253 139 TREAIHATEQGFAVGMHAALHINPYYGKT--SLEGLI----SHFDSVLSM---GPTIIYNVPSRTGQDIPPRVIHTMAQS 209 (359)
Q Consensus 139 t~~ai~la~~a~~~Gadav~v~pP~y~~~--s~~~l~----~yf~~Ia~a---~PiiiYn~P~~tg~~ls~e~l~~La~~ 209 (359)
++-.++.++...++|||++.+..|.-... |+++.. -|++.|.+. .|+++|.. |. +...+..+.+.
T Consensus 170 t~~~~~~~~~~~eaGad~i~i~d~~a~~~~isp~~f~e~~~p~~k~i~~~i~~~~~ilh~c----G~--~~~~l~~~~~~ 243 (326)
T cd03307 170 TEACIEYAKAQLEAGADIITIADPTASPELISPEFYEEFALPYHKKIVKELHGCPTILHIC----GN--TTPILEYIAQC 243 (326)
T ss_pred HHHHHHHHHHHHHcCCCEEEecCCCccccccCHHHHHHHHHHHHHHHHHHHhcCCcEEEEC----CC--ChhHHHHHHHc
Confidence 55567888888889999998888865443 666655 455677765 37776643 22 23356666653
Q ss_pred C-CeEEEeccCchh-hHhhhhCCceEEEecCC
Q 018253 210 P-NLAGVKECVGND-RVEHYTGNGIVVWSGND 239 (359)
Q Consensus 210 p-nivGiK~ss~d~-~l~~~~~~~~~v~~G~d 239 (359)
+ ++.++-. ..|. ..++..+++..++.|.|
T Consensus 244 g~d~~~~d~-~~dl~e~~~~~g~~~~i~Gnid 274 (326)
T cd03307 244 GFDGISVDE-KVDVKTAKEIVGGRAALIGNVS 274 (326)
T ss_pred CCCeecccc-cCCHHHHHHHcCCceEEEeCCC
Confidence 2 4443322 2232 33344455555554443
No 196
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=89.18 E-value=2.5 Score=41.34 Aligned_cols=84 Identities=14% Similarity=0.088 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCCCHHHHHHHHHHHHhCCCCEEE
Q 018253 79 EAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAAL 158 (359)
Q Consensus 79 ~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~st~~ai~la~~a~~~Gadav~ 158 (359)
+....+++.+.+.|++.|.+-|-|.+...--.. ..++++.+.+.+ ++|||+.=+-.+.+++.+..+ ..|+|+||
T Consensus 149 ~~~~~~a~~le~~G~d~i~vh~rt~~~~~~G~a-~~~~i~~ik~~~--~iPVI~nGgI~s~~da~~~l~---~~gadgVm 222 (321)
T PRK10415 149 RNCVEIAQLAEDCGIQALTIHGRTRACLFNGEA-EYDSIRAVKQKV--SIPVIANGDITDPLKARAVLD---YTGADALM 222 (321)
T ss_pred chHHHHHHHHHHhCCCEEEEecCccccccCCCc-ChHHHHHHHHhc--CCcEEEeCCCCCHHHHHHHHh---ccCCCEEE
Confidence 346677777889999999998877543321111 235666666655 589887544446666665553 37999999
Q ss_pred EcCCCCCCCC
Q 018253 159 HINPYYGKTS 168 (359)
Q Consensus 159 v~pP~y~~~s 168 (359)
+.-..+..|.
T Consensus 223 iGR~~l~nP~ 232 (321)
T PRK10415 223 IGRAAQGRPW 232 (321)
T ss_pred EChHhhcCCh
Confidence 9977776553
No 197
>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.
Probab=89.17 E-value=1.6 Score=40.91 Aligned_cols=90 Identities=17% Similarity=0.185 Sum_probs=58.0
Q ss_pred HHHHHHHHCCCCEEEEccC-ccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCCCHHHHHHHHHHHHhCCCCEEEEcC
Q 018253 83 DLVNMQIVNGAEGMIVGGT-TGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHIN 161 (359)
Q Consensus 83 ~li~~li~~Gv~Gl~v~Gs-tGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~st~~ai~la~~a~~~Gadav~v~p 161 (359)
-+.++|.+.|+..+..+|+ .|-+.-+...+-.+ ..++.. ++|||+..|=.+..++ .+|.++|+|+|++-.
T Consensus 135 v~akrL~d~GcaavMPlgsPIGSg~Gi~n~~~l~---~i~~~~--~vPvIvDAGiG~pSda----a~AMElG~daVLvNT 205 (247)
T PF05690_consen 135 VLAKRLEDAGCAAVMPLGSPIGSGRGIQNPYNLR---IIIERA--DVPVIVDAGIGTPSDA----AQAMELGADAVLVNT 205 (247)
T ss_dssp HHHHHHHHTT-SEBEEBSSSTTT---SSTHHHHH---HHHHHG--SSSBEEES---SHHHH----HHHHHTT-SEEEESH
T ss_pred HHHHHHHHCCCCEEEecccccccCcCCCCHHHHH---HHHHhc--CCcEEEeCCCCCHHHH----HHHHHcCCceeehhh
Confidence 3567888999999999995 56666677665544 445666 7999996655556665 456779999999976
Q ss_pred CCCCCCCHHHHHHHHHHHHh
Q 018253 162 PYYGKTSLEGLISHFDSVLS 181 (359)
Q Consensus 162 P~y~~~s~~~l~~yf~~Ia~ 181 (359)
-.....++-.+-+-|+.-.+
T Consensus 206 AiA~A~dPv~MA~Af~~AV~ 225 (247)
T PF05690_consen 206 AIAKAKDPVAMARAFKLAVE 225 (247)
T ss_dssp HHHTSSSHHHHHHHHHHHHH
T ss_pred HHhccCCHHHHHHHHHHHHH
Confidence 66555666666666654433
No 198
>TIGR00126 deoC deoxyribose-phosphate aldolase. Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria.
Probab=89.13 E-value=18 Score=33.29 Aligned_cols=113 Identities=17% Similarity=0.055 Sum_probs=78.0
Q ss_pred ceEEeeecCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCC-cEEEEecCCCCH
Q 018253 61 RLITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGAS-VKVIGNTGSNST 139 (359)
Q Consensus 61 Gi~~al~TPF~~dg~ID~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~gr-vpViagvg~~st 139 (359)
++-.+.+.=| +.|.-..+.=...++..++.|++-+=+.-..|-..+=..++-.+-+..+++.+.+. ++||.-++..+-
T Consensus 53 ~v~v~tVigF-P~G~~~~~~K~~E~~~Av~~GAdEiDvv~n~g~l~~g~~~~v~~ei~~i~~~~~g~~lKvIlE~~~L~~ 131 (211)
T TIGR00126 53 EVRICTVVGF-PLGASTTDVKLYETKEAIKYGADEVDMVINIGALKDGNEEVVYDDIRAVVEACAGVLLKVIIETGLLTD 131 (211)
T ss_pred CCeEEEEeCC-CCCCCcHHHHHHHHHHHHHcCCCEEEeecchHhhhCCcHHHHHHHHHHHHHHcCCCeEEEEEecCCCCH
Confidence 3444445555 56777888888888999999999887777777554444555555666666665543 567777787777
Q ss_pred HHHHHHHHHHHhCCCCEEEEcCCCC-CCCCHHHHHH
Q 018253 140 REAIHATEQGFAVGMHAALHINPYY-GKTSLEGLIS 174 (359)
Q Consensus 140 ~~ai~la~~a~~~Gadav~v~pP~y-~~~s~~~l~~ 174 (359)
++-+..++.+.++|||.+=..+=|. ...+.+++..
T Consensus 132 ~ei~~a~~ia~eaGADfvKTsTGf~~~gat~~dv~~ 167 (211)
T TIGR00126 132 EEIRKACEICIDAGADFVKTSTGFGAGGATVEDVRL 167 (211)
T ss_pred HHHHHHHHHHHHhCCCEEEeCCCCCCCCCCHHHHHH
Confidence 8888999999999999776664444 2234444333
No 199
>PRK06252 methylcobalamin:coenzyme M methyltransferase; Validated
Probab=89.04 E-value=2.8 Score=40.87 Aligned_cols=74 Identities=9% Similarity=0.082 Sum_probs=52.1
Q ss_pred HHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHH----HHHHHhhCCCcEEEEecCCCCHHHHHHHHHHHHhCCCCE
Q 018253 81 YDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLI----GHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHA 156 (359)
Q Consensus 81 l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li----~~~v~~~~grvpViagvg~~st~~ai~la~~a~~~Gada 156 (359)
+.++++.++++|++++.+.-+.+....||.++..+++ +.+++.+..+ +++.++.+.. . .+.....+.|+|.
T Consensus 182 ~~~~~~~~~~aGad~I~i~d~~a~~~~lsp~~f~ef~~p~~~~i~~~i~~~-~~ilH~cG~~-~---~~l~~~~~~g~d~ 256 (339)
T PRK06252 182 CIEYAKAQLEAGADVICIADPSASPELLGPKMFEEFVLPYLNKIIDEVKGL-PTILHICGDL-T---SILEEMADCGFDG 256 (339)
T ss_pred HHHHHHHHHHcCCCEEEeCCCCccccccCHHHHHHHHHHHHHHHHHHhccC-CcEEEECCCc-h---HHHHHHHhcCCCe
Confidence 4556666788999999999998888889999988776 4555666555 5666665443 2 3345555688887
Q ss_pred EEE
Q 018253 157 ALH 159 (359)
Q Consensus 157 v~v 159 (359)
+.+
T Consensus 257 ~~~ 259 (339)
T PRK06252 257 ISI 259 (339)
T ss_pred ecc
Confidence 553
No 200
>PRK11572 copper homeostasis protein CutC; Provisional
Probab=89.03 E-value=3.3 Score=39.11 Aligned_cols=88 Identities=13% Similarity=0.189 Sum_probs=62.7
Q ss_pred CCceEEeeecCCCCCCCCCHHHHHHH------------------------HHHHHHCCCCEEEEccCccCcCCCCHHHHH
Q 018253 59 ALRLITAIKTPYLPDGRFDLEAYDDL------------------------VNMQIVNGAEGMIVGGTTGEGQLMSWDEHI 114 (359)
Q Consensus 59 ~~Gi~~al~TPF~~dg~ID~~~l~~l------------------------i~~li~~Gv~Gl~v~GstGE~~~LT~~Er~ 114 (359)
..|++--.+ ++||+||.+.++++ +++|++.|++.|+.-|... +..|=.
T Consensus 87 adGvV~G~L---~~dg~vD~~~~~~Li~~a~~~~vTFHRAfD~~~d~~~al~~l~~lG~~rILTSGg~~-----~a~~g~ 158 (248)
T PRK11572 87 FPGLVTGVL---DVDGHVDMPRMRKIMAAAGPLAVTFHRAFDMCANPLNALKQLADLGVARILTSGQQQ-----DAEQGL 158 (248)
T ss_pred CCEEEEeeE---CCCCCcCHHHHHHHHHHhcCCceEEechhhccCCHHHHHHHHHHcCCCEEECCCCCC-----CHHHHH
Confidence 445554444 56999999998765 5678899999999776654 477888
Q ss_pred HHHHHHHHhhCCCcEEEEecCCCCHHHHHHHHHHHHhCCCCEEEEc
Q 018253 115 MLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHI 160 (359)
Q Consensus 115 ~li~~~v~~~~grvpViagvg~~st~~ai~la~~a~~~Gadav~v~ 160 (359)
..++..++.+++++ |++|-|= +.+..-++ . +.|+..+-..
T Consensus 159 ~~L~~lv~~a~~~~-Im~GgGV-~~~Nv~~l-~---~tG~~~~H~s 198 (248)
T PRK11572 159 SLIMELIAASDGPI-IMAGAGV-RLSNLHKF-L---DAGVREVHSS 198 (248)
T ss_pred HHHHHHHHhcCCCE-EEeCCCC-CHHHHHHH-H---HcCCCEEeeC
Confidence 88888888887766 8887663 44444444 2 4888877544
No 201
>PRK14041 oxaloacetate decarboxylase; Provisional
Probab=89.03 E-value=7.1 Score=40.33 Aligned_cols=97 Identities=18% Similarity=0.174 Sum_probs=75.5
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCCCHHHHHHHHHHHHhCCC
Q 018253 75 RFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGM 154 (359)
Q Consensus 75 ~ID~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~st~~ai~la~~a~~~Ga 154 (359)
..+.+-+.++++.+.+.|++.|.+.-|+|= +++.+-.++++.+.+.++ +||=++. +++.--++.-+-.|.++||
T Consensus 149 ~~t~e~~~~~a~~l~~~Gad~I~i~Dt~G~---l~P~~v~~Lv~~lk~~~~--vpI~~H~-Hnt~GlA~AN~laAieaGa 222 (467)
T PRK14041 149 VHTLEYYLEFARELVDMGVDSICIKDMAGL---LTPKRAYELVKALKKKFG--VPVEVHS-HCTTGLASLAYLAAVEAGA 222 (467)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEECCccCC---cCHHHHHHHHHHHHHhcC--CceEEEe-cCCCCcHHHHHHHHHHhCC
Confidence 668999999999999999999999999995 799999999999988774 7876655 5677788888889999999
Q ss_pred CEEEEc-CCCCCC---CCHHHHHHHHH
Q 018253 155 HAALHI-NPYYGK---TSLEGLISHFD 177 (359)
Q Consensus 155 dav~v~-pP~y~~---~s~~~l~~yf~ 177 (359)
|.+=.. .|+-.. ++-++++..++
T Consensus 223 d~vD~sv~~~g~gagN~atE~lv~~L~ 249 (467)
T PRK14041 223 DMFDTAISPFSMGTSQPPFESMYYAFR 249 (467)
T ss_pred CEEEeeccccCCCCCChhHHHHHHHHH
Confidence 988444 344333 33355554443
No 202
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=88.98 E-value=4 Score=38.30 Aligned_cols=77 Identities=16% Similarity=0.205 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEE--e------cCCCCHHHHHHHHHHHH
Q 018253 79 EAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIG--N------TGSNSTREAIHATEQGF 150 (359)
Q Consensus 79 ~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpVia--g------vg~~st~~ai~la~~a~ 150 (359)
..++++++++-+.|.+.+=+.-.+-+ |+.++|.++++.+.+. ...|+. | -...++.+-|+++++.-
T Consensus 71 ~~~~~Yl~~~k~lGf~~IEiS~G~~~---i~~~~~~rlI~~~~~~---g~~v~~EvG~K~~~~~~~~~~~~~i~~~~~~L 144 (237)
T TIGR03849 71 GKFDEYLNECDELGFEAVEISDGSME---ISLEERCNLIERAKDN---GFMVLSEVGKKSPEKDSELTPDDRIKLINKDL 144 (237)
T ss_pred hhHHHHHHHHHHcCCCEEEEcCCccC---CCHHHHHHHHHHHHhC---CCeEeccccccCCcccccCCHHHHHHHHHHHH
Confidence 57888888999999999877666554 8999999999988763 112221 1 12356788999999999
Q ss_pred hCCCCEEEEcC
Q 018253 151 AVGMHAALHIN 161 (359)
Q Consensus 151 ~~Gadav~v~p 161 (359)
++||+.||+-.
T Consensus 145 eAGA~~ViiEa 155 (237)
T TIGR03849 145 EAGADYVIIEG 155 (237)
T ss_pred HCCCcEEEEee
Confidence 99999999864
No 203
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=88.94 E-value=6.2 Score=38.39 Aligned_cols=88 Identities=19% Similarity=0.144 Sum_probs=55.0
Q ss_pred HHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCCCHHHHHHHHHHHHhCCCCEEEEc
Q 018253 81 YDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHI 160 (359)
Q Consensus 81 l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~st~~ai~la~~a~~~Gadav~v~ 160 (359)
+.++++.+++.|++-+.+.+.. .. ++++...+. .++|++.+++ ++.++.++++|+|++.+.
T Consensus 76 ~~~~~~~~~~~~v~~v~~~~g~-------p~---~~i~~lk~~---g~~v~~~v~s------~~~a~~a~~~GaD~Ivv~ 136 (307)
T TIGR03151 76 VDELVDLVIEEKVPVVTTGAGN-------PG---KYIPRLKEN---GVKVIPVVAS------VALAKRMEKAGADAVIAE 136 (307)
T ss_pred HHHHHHHHHhCCCCEEEEcCCC-------cH---HHHHHHHHc---CCEEEEEcCC------HHHHHHHHHcCCCEEEEE
Confidence 3578888899999988764321 12 255544432 4788887754 456788889999999987
Q ss_pred CCCCCCC-CHHHHHHHHHHHHhc--CCeEE
Q 018253 161 NPYYGKT-SLEGLISHFDSVLSM--GPTII 187 (359)
Q Consensus 161 pP~y~~~-s~~~l~~yf~~Ia~a--~Piii 187 (359)
...-... ....-.....++.+. .||+.
T Consensus 137 g~eagGh~g~~~~~~ll~~v~~~~~iPvia 166 (307)
T TIGR03151 137 GMESGGHIGELTTMALVPQVVDAVSIPVIA 166 (307)
T ss_pred CcccCCCCCCCcHHHHHHHHHHHhCCCEEE
Confidence 6522211 111135566666665 57654
No 204
>TIGR02151 IPP_isom_2 isopentenyl-diphosphate delta-isomerase, type 2. Isopentenyl-diphosphate delta-isomerase (IPP isomerase) interconverts isopentenyl diphosphate and dimethylallyl diphosphate. This model represents the type 2 enzyme. FMN, NADPH, and Mg2+ are required by this form, which lacks homology to the type 1 enzyme (TIGR02150). IPP is precursor to many compounds, including enzyme cofactors, sterols, and isoprenoids.
Probab=88.91 E-value=1.9 Score=42.42 Aligned_cols=96 Identities=15% Similarity=0.208 Sum_probs=59.5
Q ss_pred HHHHHHHHHCCCCEEEEccCccCcCCCCHHHH--------------H---HHHHHHHHhhCCCcEEEEecCCCCHHHHHH
Q 018253 82 DDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEH--------------I---MLIGHTVNCFGASVKVIGNTGSNSTREAIH 144 (359)
Q Consensus 82 ~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er--------------~---~li~~~v~~~~grvpViagvg~~st~~ai~ 144 (359)
.+.+..+.+.|+++|.+.|..|-.+.--...| . +.+..+.+ ...++|||+.=|=.+..++.+
T Consensus 193 ~~~a~~L~~aGvd~I~Vsg~gGt~~~~ie~~r~~~~~~~~~~~~~g~~t~~~l~~~~~-~~~~ipVIasGGI~~~~di~k 271 (333)
T TIGR02151 193 KEVAKLLADAGVSAIDVAGAGGTSWAQVENYRAKGSNLASFFNDWGIPTAASLLEVRS-DAPDAPIIASGGLRTGLDVAK 271 (333)
T ss_pred HHHHHHHHHcCCCEEEECCCCCCcccchhhhcccccccchhhhcccHhHHHHHHHHHh-cCCCCeEEEECCCCCHHHHHH
Confidence 56777888999999999886653211100000 0 11112222 234689887444334444443
Q ss_pred HHHHHHhCCCCEEEEcCCCCCC---CCHHHHHHHHHHHHhc
Q 018253 145 ATEQGFAVGMHAALHINPYYGK---TSLEGLISHFDSVLSM 182 (359)
Q Consensus 145 la~~a~~~Gadav~v~pP~y~~---~s~~~l~~yf~~Ia~a 182 (359)
. ..+|||+|++.-|++.. .+++.+..|++.+.+.
T Consensus 272 a----LalGAd~V~igr~~L~~~~~~g~~~v~~~i~~~~~e 308 (333)
T TIGR02151 272 A----IALGADAVGMARPFLKAALDEGEEAVIEEIELIIEE 308 (333)
T ss_pred H----HHhCCCeehhhHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 3 33799999999997742 4778899999988775
No 205
>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated
Probab=88.89 E-value=4.2 Score=41.16 Aligned_cols=174 Identities=13% Similarity=0.079 Sum_probs=103.2
Q ss_pred CCCCHHHHHHHHHHHHHCCCCEEEEccC---------ccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCCCHHHHHH
Q 018253 74 GRFDLEAYDDLVNMQIVNGAEGMIVGGT---------TGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIH 144 (359)
Q Consensus 74 g~ID~~~l~~li~~li~~Gv~Gl~v~Gs---------tGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~st~~ai~ 144 (359)
|.-+.+.+.+++..+.+.|+++|=+|=+ .|....-..+.-.++++.+.+.+ ++||++=++. +..+..+
T Consensus 108 g~~~~~~~~~~a~~~~~~g~d~ielN~scP~~~~~~~~g~~~~~~~~~~~~i~~~v~~~~--~~Pv~vKl~p-~~~~~~~ 184 (420)
T PRK08318 108 VECNEEEWKEIAPLVEETGADGIELNFGCPHGMSERGMGSAVGQVPELVEMYTRWVKRGS--RLPVIVKLTP-NITDIRE 184 (420)
T ss_pred cCCCHHHHHHHHHHHHhcCCCEEEEeCCCCCCccccCCcccccCCHHHHHHHHHHHHhcc--CCcEEEEcCC-CcccHHH
Confidence 5556788889998888899999988644 23333455666777787777654 5899998875 4556889
Q ss_pred HHHHHHhCCCCEEEEcCCCCCCCCHHHHHHHHHHHHhcCCeEE-Ee-CCCCCCCCC---CHHHHHHHhcCCCeEEEeccC
Q 018253 145 ATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSMGPTII-YN-VPSRTGQDI---PPRVIHTMAQSPNLAGVKECV 219 (359)
Q Consensus 145 la~~a~~~Gadav~v~pP~y~~~s~~~l~~yf~~Ia~a~Piii-Yn-~P~~tg~~l---s~e~l~~La~~pnivGiK~ss 219 (359)
+++.+++.|||++.+++-.+.+..- ++.. ....|.+- .+ .-+.+|..+ +.+.+.++.+.-+.
T Consensus 185 ~a~~~~~~Gadgi~~~Nt~~~~~~i-d~~~-----~~~~p~~~~~~~~gg~SG~a~~p~~l~~v~~~~~~~~~------- 251 (420)
T PRK08318 185 PARAAKRGGADAVSLINTINSITGV-DLDR-----MIPMPIVNGKSSHGGYCGPAVKPIALNMVAEIARDPET------- 251 (420)
T ss_pred HHHHHHHCCCCEEEEecccCccccc-cccc-----cCCCceecCCCCcccccchhhhHHHHHHHHHHHhcccc-------
Confidence 9999999999999998776643210 0000 01134330 00 112334443 34455555431100
Q ss_pred chhhHhhhhCCceEEEecCCchhhhhhhhcCCceeeccccccc--HHHHHHHH
Q 018253 220 GNDRVEHYTGNGIVVWSGNDDQCHDARWNHGATGVISVTSNLV--PGMMRELM 270 (359)
Q Consensus 220 ~d~~l~~~~~~~~~v~~G~d~~~~~~~l~~Ga~G~is~~an~~--P~l~~~l~ 270 (359)
.+.-+.. .. .|+++.| ... .+.+|++++..+++.+. |..+.++.
T Consensus 252 ~~ipIig--~G--GI~s~~d--a~e-~i~aGA~~Vqi~ta~~~~gp~ii~~I~ 297 (420)
T PRK08318 252 RGLPISG--IG--GIETWRD--AAE-FILLGAGTVQVCTAAMQYGFRIVEDMI 297 (420)
T ss_pred CCCCEEe--ec--CcCCHHH--HHH-HHHhCCChheeeeeeccCCchhHHHHH
Confidence 0100100 01 1344443 333 46799999999999887 66666554
No 206
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=88.87 E-value=19 Score=35.29 Aligned_cols=159 Identities=15% Similarity=0.099 Sum_probs=90.6
Q ss_pred HHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCCCHHHHHHHHHHHHhCCCCEEEEcCC
Q 018253 83 DLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINP 162 (359)
Q Consensus 83 ~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~st~~ai~la~~a~~~Gadav~v~pP 162 (359)
+++..+.+.|-=|++.. + ++.+|..+.++.+. ++..+.+.++. ..+..++++...+.|+|.+.+-.-
T Consensus 49 ~ma~ava~~GglGvi~~----~---~~~~~~~~~i~~vk----~~l~v~~~~~~--~~~~~~~~~~l~eagv~~I~vd~~ 115 (325)
T cd00381 49 EMAIAMARLGGIGVIHR----N---MSIEEQAEEVRKVK----GRLLVGAAVGT--REDDKERAEALVEAGVDVIVIDSA 115 (325)
T ss_pred HHHHHHHHCCCEEEEeC----C---CCHHHHHHHHHHhc----cCceEEEecCC--ChhHHHHHHHHHhcCCCEEEEECC
Confidence 45556667886676532 2 36677766665543 44444444443 467788999999999998877542
Q ss_pred CCCCCCHHHHHHHHHHHHhc---CCeEEEeCCCCCCCCCCHHHHHHHhcCCCeEEEecc--C------------chh---
Q 018253 163 YYGKTSLEGLISHFDSVLSM---GPTIIYNVPSRTGQDIPPRVIHTMAQSPNLAGVKEC--V------------GND--- 222 (359)
Q Consensus 163 ~y~~~s~~~l~~yf~~Ia~a---~PiiiYn~P~~tg~~ls~e~l~~La~~pnivGiK~s--s------------~d~--- 222 (359)
.- +.+...+..+.+.+. .||+. |...+++...++.+. .+-+||.. . +.+
T Consensus 116 ~G---~~~~~~~~i~~ik~~~p~v~Vi~-------G~v~t~~~A~~l~~a-GaD~I~vg~g~G~~~~t~~~~g~g~p~~~ 184 (325)
T cd00381 116 HG---HSVYVIEMIKFIKKKYPNVDVIA-------GNVVTAEAARDLIDA-GADGVKVGIGPGSICTTRIVTGVGVPQAT 184 (325)
T ss_pred CC---CcHHHHHHHHHHHHHCCCceEEE-------CCCCCHHHHHHHHhc-CCCEEEECCCCCcCcccceeCCCCCCHHH
Confidence 21 224555666666554 35554 556788888888752 22233321 0 001
Q ss_pred ---hHhhhhC-CceEEEe--cCC--chhhhhhhhcCCceeecccccccHHHH
Q 018253 223 ---RVEHYTG-NGIVVWS--GND--DQCHDARWNHGATGVISVTSNLVPGMM 266 (359)
Q Consensus 223 ---~l~~~~~-~~~~v~~--G~d--~~~~~~~l~~Ga~G~is~~an~~P~l~ 266 (359)
.+.+... .++.|+. |-. .... .++.+|++|++.|+.....+.+
T Consensus 185 ~i~~v~~~~~~~~vpVIA~GGI~~~~di~-kAla~GA~~VmiGt~fa~t~Es 235 (325)
T cd00381 185 AVADVAAAARDYGVPVIADGGIRTSGDIV-KALAAGADAVMLGSLLAGTDES 235 (325)
T ss_pred HHHHHHHHHhhcCCcEEecCCCCCHHHHH-HHHHcCCCEEEecchhcccccC
Confidence 1112221 2455665 332 2233 4588999999988776655443
No 207
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=88.76 E-value=4.1 Score=38.48 Aligned_cols=78 Identities=18% Similarity=0.244 Sum_probs=55.7
Q ss_pred HHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCCCHHHHHHHHHHHHhCCCCEEEEcC
Q 018253 82 DDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHIN 161 (359)
Q Consensus 82 ~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~st~~ai~la~~a~~~Gadav~v~p 161 (359)
..+++.+.+.|++.+++.+-+-++..--. -.++++.+.+.+ ++|||++=|-.+.++..++.+ +.|+|++++..
T Consensus 155 ~e~~~~~~~~g~~~ii~~~i~~~G~~~G~--d~~~i~~~~~~~--~ipvIasGGv~s~eD~~~l~~---~~GvdgVivg~ 227 (258)
T PRK01033 155 LELAKEYEALGAGEILLNSIDRDGTMKGY--DLELLKSFRNAL--KIPLIALGGAGSLDDIVEAIL---NLGADAAAAGS 227 (258)
T ss_pred HHHHHHHHHcCCCEEEEEccCCCCCcCCC--CHHHHHHHHhhC--CCCEEEeCCCCCHHHHHHHHH---HCCCCEEEEcc
Confidence 55666677899999999876654443222 344555555553 589999877778888777653 46999999999
Q ss_pred CCCCC
Q 018253 162 PYYGK 166 (359)
Q Consensus 162 P~y~~ 166 (359)
.+|+.
T Consensus 228 a~~~~ 232 (258)
T PRK01033 228 LFVFK 232 (258)
T ss_pred eeeeC
Confidence 98875
No 208
>TIGR00222 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase. Members of this family are 3-methyl-2-oxobutanoate hydroxymethyltransferase, the first enzyme of the pantothenate biosynthesis pathway. An alternate name is ketopantoate hydroxymethyltransferase.
Probab=88.70 E-value=3.7 Score=39.19 Aligned_cols=89 Identities=19% Similarity=0.165 Sum_probs=63.5
Q ss_pred HHHHHHhCCCCEEEEcCC----CCC-----CCCHHHHHHHHHHHHhc--CCeEEEeCCCCCCCCCCHHH----HHHHhcC
Q 018253 145 ATEQGFAVGMHAALHINP----YYG-----KTSLEGLISHFDSVLSM--GPTIIYNVPSRTGQDIPPRV----IHTMAQS 209 (359)
Q Consensus 145 la~~a~~~Gadav~v~pP----~y~-----~~s~~~l~~yf~~Ia~a--~PiiiYn~P~~tg~~ls~e~----l~~La~~ 209 (359)
.|+.++++|+|++++..- .+. ..+-++++.|-++|++. .|+++=|.|. +++. +++. ..+|.+.
T Consensus 27 sA~i~~~aG~d~ilvGdSlgm~~lG~~~t~~vtldem~~h~~aV~rg~~~~~vv~DmPf-~sy~-~~e~a~~na~rl~~e 104 (263)
T TIGR00222 27 FAKLFADAGVDVILVGDSLGMVVLGHDSTLPVTVADMIYHTAAVKRGAPNCLIVTDLPF-MSYA-TPEQALKNAARVMQE 104 (263)
T ss_pred HHHHHHHcCCCEEEECccHhHHhcCCCCCCCcCHHHHHHHHHHHHhhCCCceEEeCCCc-CCCC-CHHHHHHHHHHHHHH
Confidence 467788899999998653 222 36789999999999986 6999999994 5675 4655 3455555
Q ss_pred CCeEEEeccCchh---hHhhhhCCceEEE
Q 018253 210 PNLAGVKECVGND---RVEHYTGNGIVVW 235 (359)
Q Consensus 210 pnivGiK~ss~d~---~l~~~~~~~~~v~ 235 (359)
-...|+|.+.+.. ++..+...++.|+
T Consensus 105 aGa~aVkiEgg~~~~~~i~~l~~~gIpV~ 133 (263)
T TIGR00222 105 TGANAVKLEGGEWLVETVQMLTERGVPVV 133 (263)
T ss_pred hCCeEEEEcCcHhHHHHHHHHHHCCCCEE
Confidence 6899999998752 3444444445444
No 209
>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=88.53 E-value=2.6 Score=39.96 Aligned_cols=83 Identities=14% Similarity=0.116 Sum_probs=56.5
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEc--cCccCcCCCCH-HHHHHHHHHHHHhhCCCcEEEEecCCCCH--HHHHHHHHHH
Q 018253 75 RFDLEAYDDLVNMQIVNGAEGMIVG--GTTGEGQLMSW-DEHIMLIGHTVNCFGASVKVIGNTGSNST--REAIHATEQG 149 (359)
Q Consensus 75 ~ID~~~l~~li~~li~~Gv~Gl~v~--GstGE~~~LT~-~Er~~li~~~v~~~~grvpViagvg~~st--~~ai~la~~a 149 (359)
.-+.+.+..-++++.+.|.+-|+++ |+ ..+...+. .=-.+.+....+.. .+||+++.++..- +-...+++.|
T Consensus 132 ~~t~~e~~~A~e~i~~~Gn~~i~L~eRg~-~~Y~~~~~n~~dl~ai~~lk~~~--~lPVivd~SHs~G~r~~v~~~a~AA 208 (250)
T PRK13397 132 MATIEEYLGALSYLQDTGKSNIILCERGV-RGYDVETRNMLDIMAVPIIQQKT--DLPIIVDVSHSTGRRDLLLPAAKIA 208 (250)
T ss_pred CCCHHHHHHHHHHHHHcCCCeEEEEcccc-CCCCCccccccCHHHHHHHHHHh--CCCeEECCCCCCcccchHHHHHHHH
Confidence 4778899999999999999888887 55 44554422 22223344444434 5899998884321 2245778899
Q ss_pred HhCCCCEEEEc
Q 018253 150 FAVGMHAALHI 160 (359)
Q Consensus 150 ~~~Gadav~v~ 160 (359)
.++|||++++-
T Consensus 209 vA~GAdGl~IE 219 (250)
T PRK13397 209 KAVGANGIMME 219 (250)
T ss_pred HHhCCCEEEEE
Confidence 99999999875
No 210
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=88.51 E-value=2.3 Score=39.79 Aligned_cols=76 Identities=13% Similarity=0.085 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCCCHHHHHHHHHHHHhCCCCEEEE
Q 018253 80 AYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALH 159 (359)
Q Consensus 80 ~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~st~~ai~la~~a~~~Gadav~v 159 (359)
....+.+.+.+.|+++|.+-+..+-. .. =..+.++.+.+.++ .+|||+.=+=.+.+++.++.+ .|||+||+
T Consensus 149 ~~~~~a~~l~~aGad~i~Vd~~~~g~---~~-a~~~~I~~i~~~~~-~ipIIgNGgI~s~eda~e~l~----~GAd~Vmv 219 (231)
T TIGR00736 149 DELIDALNLVDDGFDGIHVDAMYPGK---PY-ADMDLLKILSEEFN-DKIIIGNNSIDDIESAKEMLK----AGADFVSV 219 (231)
T ss_pred hHHHHHHHHHHcCCCEEEEeeCCCCC---ch-hhHHHHHHHHHhcC-CCcEEEECCcCCHHHHHHHHH----hCCCeEEE
Confidence 34577777889999999885322110 00 12455666666653 489887555557788888776 49999999
Q ss_pred cCCCC
Q 018253 160 INPYY 164 (359)
Q Consensus 160 ~pP~y 164 (359)
.-..+
T Consensus 220 gR~~l 224 (231)
T TIGR00736 220 ARAIL 224 (231)
T ss_pred cHhhc
Confidence 86544
No 211
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=88.46 E-value=8.6 Score=38.27 Aligned_cols=99 Identities=6% Similarity=-0.082 Sum_probs=58.8
Q ss_pred HHHHHHHHCCCCEEEEccCccCc-----CCCCHHHHHHHHHHHHHhhC-CCcEEEEec---CCCCHHHHHHHHHHHHhCC
Q 018253 83 DLVNMQIVNGAEGMIVGGTTGEG-----QLMSWDEHIMLIGHTVNCFG-ASVKVIGNT---GSNSTREAIHATEQGFAVG 153 (359)
Q Consensus 83 ~li~~li~~Gv~Gl~v~GstGE~-----~~LT~~Er~~li~~~v~~~~-grvpViagv---g~~st~~ai~la~~a~~~G 153 (359)
+-++..+++|++.+-+..++++. ...|.+|-.+.+..+++.+. ....|.++. +..+.+..+++++.+.++|
T Consensus 76 ~di~~a~~~g~~~i~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~i~~ak~~g~~v~~~~ed~~r~~~~~l~~~~~~~~~~G 155 (365)
T TIGR02660 76 ADIEAAARCGVDAVHISIPVSDLQIEAKLRKDRAWVLERLARLVSFARDRGLFVSVGGEDASRADPDFLVELAEVAAEAG 155 (365)
T ss_pred HHHHHHHcCCcCEEEEEEccCHHHHHHHhCcCHHHHHHHHHHHHHHHHhCCCEEEEeecCCCCCCHHHHHHHHHHHHHcC
Confidence 33556667788877777777763 34566665544444444432 123444443 2335667777777777777
Q ss_pred CCEEEEcCCCCCCCCHHHHHHHHHHHHhc
Q 018253 154 MHAALHINPYYGKTSLEGLISHFDSVLSM 182 (359)
Q Consensus 154 adav~v~pP~y~~~s~~~l~~yf~~Ia~a 182 (359)
+|.+.+. =.....+++++.+.++.+.+.
T Consensus 156 a~~i~l~-DT~G~~~P~~v~~lv~~l~~~ 183 (365)
T TIGR02660 156 ADRFRFA-DTVGILDPFSTYELVRALRQA 183 (365)
T ss_pred cCEEEEc-ccCCCCCHHHHHHHHHHHHHh
Confidence 7765433 334455677777777777665
No 212
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=88.39 E-value=3.3 Score=41.25 Aligned_cols=112 Identities=15% Similarity=0.112 Sum_probs=83.4
Q ss_pred CCceEEeeecCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCCC
Q 018253 59 ALRLITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNS 138 (359)
Q Consensus 59 ~~Gi~~al~TPF~~dg~ID~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~s 138 (359)
-.|+.+. +++-+ -++.|.+-+.+.++.+.+.|++.|.+.-|+| .+++++-.++++.+.+..+ +|+=++ ++++
T Consensus 123 ~~G~~v~-~~~ed-a~r~~~~~l~~~~~~~~~~g~~~i~l~DT~G---~~~P~~v~~li~~l~~~~~--~~l~~H-~Hnd 194 (363)
T TIGR02090 123 EHGLIVE-FSAED-ATRTDIDFLIKVFKRAEEAGADRINIADTVG---VLTPQKMEELIKKLKENVK--LPISVH-CHND 194 (363)
T ss_pred HcCCEEE-EEEee-cCCCCHHHHHHHHHHHHhCCCCEEEEeCCCC---ccCHHHHHHHHHHHhcccC--ceEEEE-ecCC
Confidence 4564433 33332 3568999999999999999999999999999 7899999999998887653 555444 4678
Q ss_pred HHHHHHHHHHHHhCCCCEEEEcCCCC----CCCCHHHHHHHHHH
Q 018253 139 TREAIHATEQGFAVGMHAALHINPYY----GKTSLEGLISHFDS 178 (359)
Q Consensus 139 t~~ai~la~~a~~~Gadav~v~pP~y----~~~s~~~l~~yf~~ 178 (359)
..-++..+..|.++||+.+-..---. ...+-++++.+.+.
T Consensus 195 ~GlA~AN~laA~~aGa~~vd~s~~GlGeraGN~~lE~vv~~L~~ 238 (363)
T TIGR02090 195 FGLATANSIAGVKAGAEQVHVTVNGIGERAGNAALEEVVMALKY 238 (363)
T ss_pred CChHHHHHHHHHHCCCCEEEEEeeccccccccccHHHHHHHHHH
Confidence 88899999999999999886654333 22445666666543
No 213
>KOG2368 consensus Hydroxymethylglutaryl-CoA lyase [Energy production and conversion; Amino acid transport and metabolism]
Probab=88.38 E-value=4.4 Score=37.81 Aligned_cols=124 Identities=21% Similarity=0.289 Sum_probs=75.6
Q ss_pred cCcCcc-cccccCCCCCCCCCCCcccccCCCCCCCccccccccCCcccc-cCCceEEeeecCCCCCCCCCHHHHHHHHHH
Q 018253 10 NLSNCG-PVSVSCTGKNRKWRPPQAAIIPNYHLPMRSFEVKNRTSAEDI-KALRLITAIKTPYLPDGRFDLEAYDDLVNM 87 (359)
Q Consensus 10 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~Gi~~al~TPF~~dg~ID~~~l~~li~~ 87 (359)
.||.|| ++....+.-+.+|-|..+-.. +| |+.+ ++.|+--|++||= +++|+ .
T Consensus 48 ~Lse~Gl~~vEtTSFVSpKWVPQl~D~~----------ev-----~k~i~~~~Gv~yPVLtPN-------lkGf~----~ 101 (316)
T KOG2368|consen 48 RLSECGLQVVETTSFVSPKWVPQLADHN----------EV-----MKGIRKFPGVSYPVLTPN-------LKGFE----A 101 (316)
T ss_pred HHHHcCCceeeeecccCccccccccchH----------HH-----HHhhhcCCCccccccCcc-------hhhHH----H
Confidence 378888 566677778889988765321 11 2222 5899999999993 34443 4
Q ss_pred HHHCCCCEEEEccCccCcCCCC-----HHHHHHHHHHHHHhhC-------CCcEEEEec---CCCCHHHHHHHHHHHHhC
Q 018253 88 QIVNGAEGMIVGGTTGEGQLMS-----WDEHIMLIGHTVNCFG-------ASVKVIGNT---GSNSTREAIHATEQGFAV 152 (359)
Q Consensus 88 li~~Gv~Gl~v~GstGE~~~LT-----~~Er~~li~~~v~~~~-------grvpViagv---g~~st~~ai~la~~a~~~ 152 (359)
-+++|+.-+.++|..+|.++|. .||-..-++.+.+.+. |=+-..+|+ |+-......+-++...+.
T Consensus 102 AvaaGa~EvavFgaASe~FslkNiNctiees~~rf~~v~kaA~~~ni~vRGYVScvvGCPyeG~v~P~kVa~V~k~ly~m 181 (316)
T KOG2368|consen 102 AVAAGAEEVAVFGAASEAFSLKNINCTIEESLKRFMEVLKAAQEHNIRVRGYVSCVVGCPYEGAVQPSKVAEVVKKLYEM 181 (316)
T ss_pred HHhcCceeEEeeehhhhhhhhccCCccHHHHHHHHHHHHHHHHHcCCccceEEEEEecCCccCCcCHHHHHHHHHHHHhC
Confidence 5689999999999999999874 5554444444333321 222233333 334455555555555555
Q ss_pred CCCEEEE
Q 018253 153 GMHAALH 159 (359)
Q Consensus 153 Gadav~v 159 (359)
|.--+.+
T Consensus 182 GCyEiSL 188 (316)
T KOG2368|consen 182 GCYEISL 188 (316)
T ss_pred CcEEEec
Confidence 5544443
No 214
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=88.35 E-value=24 Score=33.71 Aligned_cols=180 Identities=19% Similarity=0.218 Sum_probs=111.0
Q ss_pred CCCCCCHHHHHHHHHHHHHCCCCEEEEccCccCc----------------CCCCHHHHHHHHHHHHHhhCCCcEEEEecC
Q 018253 72 PDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEG----------------QLMSWDEHIMLIGHTVNCFGASVKVIGNTG 135 (359)
Q Consensus 72 ~dg~ID~~~l~~li~~li~~Gv~Gl~v~GstGE~----------------~~LT~~Er~~li~~~v~~~~grvpViagvg 135 (359)
--|.-|++...+.+..|++.|+|.|=++=-.+.- .-+|.+.-.++++.+.+. +.++|++.=+.
T Consensus 24 t~GdP~~e~s~e~i~~L~~~GaD~iELGvPfSDPvADGP~Iq~A~~rAL~~g~t~~~~lel~~~~r~~-~~~~Pivlm~Y 102 (265)
T COG0159 24 TAGDPDLETSLEIIKTLVEAGADILELGVPFSDPVADGPTIQAAHLRALAAGVTLEDTLELVEEIRAK-GVKVPIVLMTY 102 (265)
T ss_pred eCCCCCHHHHHHHHHHHHhCCCCEEEecCCCCCcCccCHHHHHHHHHHHHCCCCHHHHHHHHHHHHhc-CCCCCEEEEEe
Confidence 3566899999999999999999987655444332 246778888888877653 45789877665
Q ss_pred CCC-HHH-HHHHHHHHHhCCCCEEEEcCCCCCCCCHHHHHHHHHHHHhc--CCeEEEeCCCCCCCCCCHHHHHHHhcCC-
Q 018253 136 SNS-TRE-AIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSM--GPTIIYNVPSRTGQDIPPRVIHTMAQSP- 210 (359)
Q Consensus 136 ~~s-t~~-ai~la~~a~~~Gadav~v~pP~y~~~s~~~l~~yf~~Ia~a--~PiiiYn~P~~tg~~ls~e~l~~La~~p- 210 (359)
.|- ..- .-++.+++++.|+|++++. -. ..|+-. .|...++. +-.+..=.| .-+.+.++++++..
T Consensus 103 ~Npi~~~Gie~F~~~~~~~GvdGlivp--DL---P~ee~~-~~~~~~~~~gi~~I~lvaP-----tt~~~rl~~i~~~a~ 171 (265)
T COG0159 103 YNPIFNYGIEKFLRRAKEAGVDGLLVP--DL---PPEESD-ELLKAAEKHGIDPIFLVAP-----TTPDERLKKIAEAAS 171 (265)
T ss_pred ccHHHHhhHHHHHHHHHHcCCCEEEeC--CC---ChHHHH-HHHHHHHHcCCcEEEEeCC-----CCCHHHHHHHHHhCC
Confidence 554 333 3346999999999999985 22 122222 33334433 433333344 34578888888643
Q ss_pred ---------CeEEEeccCchh------hHhhhhCCceEEEecCC----chhhhhhhhcCCceeecccccccHHHHHHHHH
Q 018253 211 ---------NLAGVKECVGND------RVEHYTGNGIVVWSGND----DQCHDARWNHGATGVISVTSNLVPGMMRELMF 271 (359)
Q Consensus 211 ---------nivGiK~ss~d~------~l~~~~~~~~~v~~G~d----~~~~~~~l~~Ga~G~is~~an~~P~l~~~l~~ 271 (359)
.+.|.+....+. +++++. +.-+..|.. ++.- ..... +||+|.|++ ++++.+
T Consensus 172 GFiY~vs~~GvTG~~~~~~~~~~~~v~~vr~~~--~~Pv~vGFGIs~~e~~~-~v~~~-ADGVIVGSA------iV~~i~ 241 (265)
T COG0159 172 GFIYYVSRMGVTGARNPVSADVKELVKRVRKYT--DVPVLVGFGISSPEQAA-QVAEA-ADGVIVGSA------IVKIIE 241 (265)
T ss_pred CcEEEEecccccCCCcccchhHHHHHHHHHHhc--CCCeEEecCcCCHHHHH-HHHHh-CCeEEEcHH------HHHHHH
Confidence 344444442211 344443 445566553 2332 33566 999999964 666666
Q ss_pred cC
Q 018253 272 GG 273 (359)
Q Consensus 272 ag 273 (359)
++
T Consensus 242 ~~ 243 (265)
T COG0159 242 EG 243 (265)
T ss_pred hc
Confidence 55
No 215
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=88.35 E-value=24 Score=33.66 Aligned_cols=16 Identities=19% Similarity=0.019 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHhCCC
Q 018253 139 TREAIHATEQGFAVGM 154 (359)
Q Consensus 139 t~~ai~la~~a~~~Ga 154 (359)
.+...+.++.|++.|.
T Consensus 117 ~~~~~~~i~~ak~~G~ 132 (275)
T cd07937 117 VRNLEVAIKAVKKAGK 132 (275)
T ss_pred HHHHHHHHHHHHHCCC
Confidence 4445555555555553
No 216
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=88.34 E-value=8.8 Score=36.34 Aligned_cols=44 Identities=20% Similarity=0.246 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHhCCCCEEEEcCCCCCCCCHHHHHHHHHHHHhcCC
Q 018253 140 REAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSMGP 184 (359)
Q Consensus 140 ~~ai~la~~a~~~Gadav~v~pP~y~~~s~~~l~~yf~~Ia~a~P 184 (359)
+.+.+.++.|++.|.. +.+.+|+-...+.+.+.+.++++.+..+
T Consensus 114 ~~~~~~i~~a~~~G~~-v~~~~~~~~~~~~~~~~~~~~~~~~~G~ 157 (268)
T cd07940 114 ERAVEAVEYAKSHGLD-VEFSAEDATRTDLDFLIEVVEAAIEAGA 157 (268)
T ss_pred HHHHHHHHHHHHcCCe-EEEeeecCCCCCHHHHHHHHHHHHHcCC
Confidence 4444556666666653 4455555555566666666666655533
No 217
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=88.33 E-value=8.2 Score=39.68 Aligned_cols=97 Identities=12% Similarity=0.169 Sum_probs=76.0
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCCCHHHHHHHHHHHHhCCC
Q 018253 75 RFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGM 154 (359)
Q Consensus 75 ~ID~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~st~~ai~la~~a~~~Ga 154 (359)
..|.+-+.++++.+.+.|++.|.+.-|+| .+++++-.++++.+.+.++ +||-++. +++.--++.-+-.|.++||
T Consensus 150 ~~~~~~~~~~a~~l~~~Gad~I~i~Dt~G---~l~P~~v~~lv~alk~~~~--~pi~~H~-Hnt~GlA~AN~laAieaGa 223 (448)
T PRK12331 150 VHTIDYFVKLAKEMQEMGADSICIKDMAG---ILTPYVAYELVKRIKEAVT--VPLEVHT-HATSGIAEMTYLKAIEAGA 223 (448)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEcCCCC---CCCHHHHHHHHHHHHHhcC--CeEEEEe-cCCCCcHHHHHHHHHHcCC
Confidence 48999999999999999999999999999 5789999999999888773 7876655 5677788888899999999
Q ss_pred CEEEEc-CCCCCC---CCHHHHHHHHH
Q 018253 155 HAALHI-NPYYGK---TSLEGLISHFD 177 (359)
Q Consensus 155 dav~v~-pP~y~~---~s~~~l~~yf~ 177 (359)
|.+=.. .|+-.. ++-++++..++
T Consensus 224 d~vD~sv~glg~gaGN~~tE~lv~~L~ 250 (448)
T PRK12331 224 DIIDTAISPFAGGTSQPATESMVAALQ 250 (448)
T ss_pred CEEEeeccccCCCcCCHhHHHHHHHHH
Confidence 988444 344333 33455555543
No 218
>PRK06806 fructose-bisphosphate aldolase; Provisional
Probab=88.29 E-value=5 Score=38.62 Aligned_cols=114 Identities=14% Similarity=0.137 Sum_probs=63.6
Q ss_pred HHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCC-CcEE---EEecC---------CCCHHHHHHHHHHH-
Q 018253 84 LVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGA-SVKV---IGNTG---------SNSTREAIHATEQG- 149 (359)
Q Consensus 84 li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~g-rvpV---iagvg---------~~st~~ai~la~~a- 149 (359)
.++..++.|++.+.+=+++ ++.+|..++.+.+++.+.. .++| +.++| +.++ ...+.++.+
T Consensus 89 ~i~~Al~~G~tsVm~d~s~-----~~~~eni~~t~~v~~~a~~~gv~veaE~ghlG~~d~~~~~~g~s~-t~~eea~~f~ 162 (281)
T PRK06806 89 KIKEALEIGFTSVMFDGSH-----LPLEENIQKTKEIVELAKQYGATVEAEIGRVGGSEDGSEDIEMLL-TSTTEAKRFA 162 (281)
T ss_pred HHHHHHHcCCCEEEEcCCC-----CCHHHHHHHHHHHHHHHHHcCCeEEEEeeeECCccCCccccccee-CCHHHHHHHH
Confidence 5566788999999998875 6789999999998887643 3554 22333 1111 122333333
Q ss_pred HhCCCCEEEE--cCCCCCCC-CHHHHHHHHHHHHhc--CCeEEEeCCCCCCCCCCHHHHHHHhc
Q 018253 150 FAVGMHAALH--INPYYGKT-SLEGLISHFDSVLSM--GPTIIYNVPSRTGQDIPPRVIHTMAQ 208 (359)
Q Consensus 150 ~~~Gadav~v--~pP~y~~~-s~~~l~~yf~~Ia~a--~PiiiYn~P~~tg~~ls~e~l~~La~ 208 (359)
++.|+|.+-+ -+-+-..+ .+.-=++.+++|.+. .|+++.= |..++++.+.++.+
T Consensus 163 ~~tg~DyLAvaiG~~hg~~~~~~~l~~~~L~~i~~~~~iPlV~hG-----~SGI~~e~~~~~i~ 221 (281)
T PRK06806 163 EETDVDALAVAIGNAHGMYNGDPNLRFDRLQEINDVVHIPLVLHG-----GSGISPEDFKKCIQ 221 (281)
T ss_pred HhhCCCEEEEccCCCCCCCCCCCccCHHHHHHHHHhcCCCEEEEC-----CCCCCHHHHHHHHH
Confidence 3468888877 32221111 111123345555544 5766652 23466666666543
No 219
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=88.20 E-value=9.3 Score=41.89 Aligned_cols=89 Identities=11% Similarity=0.001 Sum_probs=61.4
Q ss_pred CCCHHHHHHHHHH-------HHHCCCCEEEEccCcc----------------CcCCCCHHHHHHHHHHHHHhh----CCC
Q 018253 75 RFDLEAYDDLVNM-------QIVNGAEGMIVGGTTG----------------EGQLMSWDEHIMLIGHTVNCF----GAS 127 (359)
Q Consensus 75 ~ID~~~l~~li~~-------li~~Gv~Gl~v~GstG----------------E~~~LT~~Er~~li~~~v~~~----~gr 127 (359)
+++.+.++++++. ..++|.|||=+.+..| |+-- |.+.|.+++..+++.+ +.+
T Consensus 540 ~mt~~eI~~~i~~f~~aA~~a~~aGfDgveih~ahGyLl~qFlsp~~N~RtD~yGG-slenR~r~~~eiv~~ir~~~~~~ 618 (765)
T PRK08255 540 EMTRADMDRVRDDFVAAARRAAEAGFDWLELHCAHGYLLSSFISPLTNQRTDEYGG-SLENRLRYPLEVFRAVRAVWPAE 618 (765)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEecccchHHHHhcCCCCCCCCCCCCC-CHHHHhHHHHHHHHHHHHhcCCC
Confidence 4666666666554 4569999998877633 3222 5677877776666654 445
Q ss_pred cEEEEecC-------CCCHHHHHHHHHHHHhCCCCEEEEcCCCC
Q 018253 128 VKVIGNTG-------SNSTREAIHATEQGFAVGMHAALHINPYY 164 (359)
Q Consensus 128 vpViagvg-------~~st~~ai~la~~a~~~Gadav~v~pP~y 164 (359)
.||.+=++ +.+.++++++++..++.|+|.+-+..+.+
T Consensus 619 ~~v~~ri~~~~~~~~g~~~~~~~~~~~~l~~~g~d~i~vs~g~~ 662 (765)
T PRK08255 619 KPMSVRISAHDWVEGGNTPDDAVEIARAFKAAGADLIDVSSGQV 662 (765)
T ss_pred CeeEEEEccccccCCCCCHHHHHHHHHHHHhcCCcEEEeCCCCC
Confidence 56655333 34688999999999999999998875543
No 220
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=88.19 E-value=6.5 Score=35.99 Aligned_cols=110 Identities=13% Similarity=0.102 Sum_probs=65.0
Q ss_pred HHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCCCHHHHHHHHHHHHhCCCCEEEEcCC
Q 018253 83 DLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINP 162 (359)
Q Consensus 83 ~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~st~~ai~la~~a~~~Gadav~v~pP 162 (359)
+.++.+.+.|++-+++.+...+.+ +.++-.++++.+.+. ..+++++++. +.++ ++.+.+.|+|.+.+..-
T Consensus 79 ~~v~~a~~aGad~I~~d~~~~~~p--~~~~~~~~i~~~~~~--~~i~vi~~v~--t~ee----~~~a~~~G~d~i~~~~~ 148 (221)
T PRK01130 79 KEVDALAAAGADIIALDATLRPRP--DGETLAELVKRIKEY--PGQLLMADCS--TLEE----GLAAQKLGFDFIGTTLS 148 (221)
T ss_pred HHHHHHHHcCCCEEEEeCCCCCCC--CCCCHHHHHHHHHhC--CCCeEEEeCC--CHHH----HHHHHHcCCCEEEcCCc
Confidence 557888999999666655443311 114556777776664 5688888765 3444 46788999998865321
Q ss_pred CC-CC--CCHHHHHHHHHHHHhc--CCeEEEeCCCCCCCCC-CHHHHHHHhcC
Q 018253 163 YY-GK--TSLEGLISHFDSVLSM--GPTIIYNVPSRTGQDI-PPRVIHTMAQS 209 (359)
Q Consensus 163 ~y-~~--~s~~~l~~yf~~Ia~a--~PiiiYn~P~~tg~~l-s~e~l~~La~~ 209 (359)
-+ .. ........+.+++.+. .|++. +-.+ +++.+.++.+.
T Consensus 149 g~t~~~~~~~~~~~~~i~~i~~~~~iPvia-------~GGI~t~~~~~~~l~~ 194 (221)
T PRK01130 149 GYTEETKKPEEPDFALLKELLKAVGCPVIA-------EGRINTPEQAKKALEL 194 (221)
T ss_pred eeecCCCCCCCcCHHHHHHHHHhCCCCEEE-------ECCCCCHHHHHHHHHC
Confidence 11 00 0111124566666654 46553 2346 57888887654
No 221
>cd06556 ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme superfamily catalyze the formation and cleavage of either P-C or C-C bonds. Typical members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), 2-methylisocitrate lyase (MICL), and ketopantoate hydroxymethyltransferase (KPHMT).
Probab=88.18 E-value=6 Score=37.20 Aligned_cols=90 Identities=13% Similarity=0.101 Sum_probs=65.4
Q ss_pred HCCCCEEEEccCccC-------cCCCCHHHHHHHHHHHHHhhCCCcEEEEec--CC-CCHHHHHHHHHHHHhCCCCEEEE
Q 018253 90 VNGAEGMIVGGTTGE-------GQLMSWDEHIMLIGHTVNCFGASVKVIGNT--GS-NSTREAIHATEQGFAVGMHAALH 159 (359)
Q Consensus 90 ~~Gv~Gl~v~GstGE-------~~~LT~~Er~~li~~~v~~~~grvpViagv--g~-~st~~ai~la~~a~~~Gadav~v 159 (359)
++|++.+++.|+.+= ...+|.+|-...++.+.+.+. .+||++-. |. .+.+++++.++...++||+++-+
T Consensus 30 ~aG~dai~v~~s~~a~~~G~pD~~~vtl~em~~~~~~I~r~~~-~~pviaD~~~G~g~~~~~~~~~~~~l~~aGa~gv~i 108 (240)
T cd06556 30 DAGLNVMLVGDSQGMTVAGYDDTLPYPVNDVPYHVRAVRRGAP-LALIVADLPFGAYGAPTAAFELAKTFMRAGAAGVKI 108 (240)
T ss_pred HcCCCEEEEChHHHHHhcCCCCCCCcCHHHHHHHHHHHHhhCC-CCCEEEeCCCCCCcCHHHHHHHHHHHHHcCCcEEEE
Confidence 469999999886542 135789998888888877653 57999954 32 25699999999999999999988
Q ss_pred cCCCCCCCCHHHHHHHHHHHHhc-CCeEE
Q 018253 160 INPYYGKTSLEGLISHFDSVLSM-GPTII 187 (359)
Q Consensus 160 ~pP~y~~~s~~~l~~yf~~Ia~a-~Piii 187 (359)
-- +.+..+-.+.+.++ .||+-
T Consensus 109 ED-------~~~~~~~i~ai~~a~i~Via 130 (240)
T cd06556 109 EG-------GEWHIETLQMLTAAAVPVIA 130 (240)
T ss_pred cC-------cHHHHHHHHHHHHcCCeEEE
Confidence 64 34555555666555 56553
No 222
>PF01070 FMN_dh: FMN-dependent dehydrogenase; InterPro: IPR000262 A number of oxidoreductases that act on alpha-hydroxy acids and which are FMN-containing flavoproteins have been shown [, , ] to be structurally related. These enzymes are: Lactate dehydrogenase (1.1.2.3 from EC), which consists of a dehydrogenase domain and a haem-binding domain called cytochrome b2 and which catalyses the conversion of lactate into pyruvate. Glycolate oxidase (1.1.3.15 from EC) ((S)-2-hydroxy-acid oxidase), a peroxisomal enzyme that catalyses the conversion of glycolate and oxygen to glyoxylate and hydrogen peroxide. Long chain alpha-hydroxy acid oxidase from rat (1.1.3.15 from EC), a peroxisomal enzyme. Lactate 2-monooxygenase (1.13.12.4 from EC) (lactate oxidase) from Mycobacterium smegmatis, which catalyses the conversion of lactate and oxygen to acetate, carbon dioxide and water. (S)-mandelate dehydrogenase from Pseudomonas putida (gene mdlB), which catalyses the reduction of (S)-mandelate to benzoylformate. The first step in the reaction mechanism of these enzymes is the abstraction of the proton from the alpha-carbon of the substrate producing a carbanion which can subsequently attach to the N5 atom of FMN. A conserved histidine has been shown [] to be involved in the removal of the proton. The region around this active site residue is highly conserved and contains an arginine residue which is involved in substrate binding.; GO: 0016491 oxidoreductase activity; PDB: 1VCG_C 1VCF_A 1P0N_B 1P0K_A 2A85_A 2A7P_A 3GIY_A 2A7N_A 3DH7_A 2RDU_A ....
Probab=88.17 E-value=1.2 Score=44.23 Aligned_cols=93 Identities=15% Similarity=0.158 Sum_probs=60.6
Q ss_pred HHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCCCHHHHHHHHHHHHhCCCCEEEEcCCCC
Q 018253 85 VNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYY 164 (359)
Q Consensus 85 i~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~st~~ai~la~~a~~~Gadav~v~pP~y 164 (359)
+..+.+.|++||.|.|.-|-..--...--..|. .+++.+++++|||+-=|=-+-.|.+ .|..+|||+|.+.-|+.
T Consensus 239 a~~~~~~G~~~i~vs~hGGr~~d~~~~~~~~L~-~i~~~~~~~~~i~~dgGir~g~Dv~----kalaLGA~~v~igr~~l 313 (356)
T PF01070_consen 239 AKRAVDAGVDGIDVSNHGGRQLDWGPPTIDALP-EIRAAVGDDIPIIADGGIRRGLDVA----KALALGADAVGIGRPFL 313 (356)
T ss_dssp HHHHHHTT-SEEEEESGTGTSSTTS-BHHHHHH-HHHHHHTTSSEEEEESS--SHHHHH----HHHHTT-SEEEESHHHH
T ss_pred HHHHHhcCCCEEEecCCCcccCccccccccccH-HHHhhhcCCeeEEEeCCCCCHHHHH----HHHHcCCCeEEEccHHH
Confidence 345788999999999888875443333333333 4455567899999854433444433 35669999999999987
Q ss_pred CCC---CHHHHHHHHHHHHhc
Q 018253 165 GKT---SLEGLISHFDSVLSM 182 (359)
Q Consensus 165 ~~~---s~~~l~~yf~~Ia~a 182 (359)
+.. .++++.++++.+.+.
T Consensus 314 ~~l~~~g~~gv~~~~~~l~~e 334 (356)
T PF01070_consen 314 YALAAGGEEGVERVLEILKEE 334 (356)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHH
Confidence 653 567787777766543
No 223
>COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]
Probab=88.13 E-value=3.7 Score=40.79 Aligned_cols=78 Identities=17% Similarity=0.190 Sum_probs=54.5
Q ss_pred HHHHHHCCCCEEEEccC--ccCcC--CCCHHHHHHHHHHHHHhhCCCcEEEEecC--CCCHHHHHHHHHHHHhCCCCEEE
Q 018253 85 VNMQIVNGAEGMIVGGT--TGEGQ--LMSWDEHIMLIGHTVNCFGASVKVIGNTG--SNSTREAIHATEQGFAVGMHAAL 158 (359)
Q Consensus 85 i~~li~~Gv~Gl~v~Gs--tGE~~--~LT~~Er~~li~~~v~~~~grvpViagvg--~~st~~ai~la~~a~~~Gadav~ 158 (359)
+...++.|+|.|++++. ++-.. .+|.+|-.+.++.+-+. +.++-|.+++. ....+...+..+.+.+.|+|++.
T Consensus 19 l~~ai~~GADaVY~G~~~~~~R~~a~nfs~~~l~e~i~~ah~~-gkk~~V~~N~~~~~~~~~~~~~~l~~l~e~GvDavi 97 (347)
T COG0826 19 LKAAIAAGADAVYIGEKEFGLRRRALNFSVEDLAEAVELAHSA-GKKVYVAVNTLLHNDELETLERYLDRLVELGVDAVI 97 (347)
T ss_pred HHHHHHcCCCEEEeCCcccccccccccCCHHHHHHHHHHHHHc-CCeEEEEeccccccchhhHHHHHHHHHHHcCCCEEE
Confidence 34567889999998876 33334 49999988888776552 33344444443 22344457889999999999999
Q ss_pred EcCCC
Q 018253 159 HINPY 163 (359)
Q Consensus 159 v~pP~ 163 (359)
+.-|.
T Consensus 98 v~Dpg 102 (347)
T COG0826 98 VADPG 102 (347)
T ss_pred EcCHH
Confidence 98875
No 224
>PRK00112 tgt queuine tRNA-ribosyltransferase; Provisional
Probab=88.11 E-value=5 Score=40.09 Aligned_cols=82 Identities=16% Similarity=0.214 Sum_probs=64.8
Q ss_pred CCCCCHHHHHHHHHHHHHCCCCEEEEcc-CccCcCCCCHHHHHHHHHHHHHhhCCCcEEE-EecCCCCHHHHHHHHHHHH
Q 018253 73 DGRFDLEAYDDLVNMQIVNGAEGMIVGG-TTGEGQLMSWDEHIMLIGHTVNCFGASVKVI-GNTGSNSTREAIHATEQGF 150 (359)
Q Consensus 73 dg~ID~~~l~~li~~li~~Gv~Gl~v~G-stGE~~~LT~~Er~~li~~~v~~~~grvpVi-agvg~~st~~ai~la~~a~ 150 (359)
.|..|.+-=++-++.+.+.|.+|+.+.| +.|| +.+|+.++++.+.+......|.. .|+| +..+.++. .
T Consensus 189 QGg~~~dLR~~sa~~l~~~~~~G~aIGGl~~ge----~~~~~~~~v~~~~~~lp~~kPryl~Gvg--~P~~i~~~----v 258 (366)
T PRK00112 189 QGGVYEDLRRESAKGLVEIDFDGYAIGGLSVGE----PKEEMYRILEHTAPLLPEDKPRYLMGVG--TPEDLVEG----V 258 (366)
T ss_pred eCCccHHHHHHHHHHHHhCCCceeEeccccCCC----CHHHHHHHHHHHHhhCCCcCCeEecCCC--CHHHHHHH----H
Confidence 6778888778888899999999999999 5788 88999999999999998877864 4766 46666544 4
Q ss_pred hCCCCEEEEcCCCC
Q 018253 151 AVGMHAALHINPYY 164 (359)
Q Consensus 151 ~~Gadav~v~pP~y 164 (359)
.+|+|-+=.+-|..
T Consensus 259 ~~GvD~FD~~~p~r 272 (366)
T PRK00112 259 ARGVDMFDCVMPTR 272 (366)
T ss_pred HcCCCEEeeCCccc
Confidence 59999775555543
No 225
>COG0167 PyrD Dihydroorotate dehydrogenase [Nucleotide transport and metabolism]
Probab=88.10 E-value=4.4 Score=39.57 Aligned_cols=85 Identities=14% Similarity=0.092 Sum_probs=63.4
Q ss_pred CHHHHHHHHHHHHHCC-CCEEEEccCc-----cCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCCCHHHHHHHHHHHH
Q 018253 77 DLEAYDDLVNMQIVNG-AEGMIVGGTT-----GEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGF 150 (359)
Q Consensus 77 D~~~l~~li~~li~~G-v~Gl~v~Gst-----GE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~st~~ai~la~~a~ 150 (359)
..+++..++..+.+.+ ++.+-+|=|. |...--..+.-.++++.+.+.. ++||++=++- +..+..+.|+.+.
T Consensus 107 ~~~~~~d~~~~~~~~~~ad~ielNiScPnt~g~~~l~~~~e~l~~l~~~vk~~~--~~Pv~vKl~P-~~~di~~iA~~~~ 183 (310)
T COG0167 107 SEEAWADYARLLEEAGDADAIELNISCPNTPGGRALGQDPELLEKLLEAVKAAT--KVPVFVKLAP-NITDIDEIAKAAE 183 (310)
T ss_pred cHHHHHHHHHHHHhcCCCCEEEEEccCCCCCChhhhccCHHHHHHHHHHHHhcc--cCceEEEeCC-CHHHHHHHHHHHH
Confidence 4567777777777777 8998887553 2222224456666666666654 4899998886 8999999999999
Q ss_pred hCCCCEEEEcCCCC
Q 018253 151 AVGMHAALHINPYY 164 (359)
Q Consensus 151 ~~Gadav~v~pP~y 164 (359)
+.|+|++.+++-..
T Consensus 184 ~~g~Dgl~~~NT~~ 197 (310)
T COG0167 184 EAGADGLIAINTTK 197 (310)
T ss_pred HcCCcEEEEEeecc
Confidence 99999999997544
No 226
>PRK00311 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed
Probab=87.98 E-value=4 Score=39.00 Aligned_cols=102 Identities=15% Similarity=0.123 Sum_probs=68.0
Q ss_pred CCcEEEEecCCCCHHHHHHHHHHHHhCCCCEEEEcC---------CCCCCCCHHHHHHHHHHHHhc--CCeEEEeCCCCC
Q 018253 126 ASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHIN---------PYYGKTSLEGLISHFDSVLSM--GPTIIYNVPSRT 194 (359)
Q Consensus 126 grvpViagvg~~st~~ai~la~~a~~~Gadav~v~p---------P~y~~~s~~~l~~yf~~Ia~a--~PiiiYn~P~~t 194 (359)
++.=++.++.+. --|+.++++|+|++++.. |-....+.+++..|.+.|++. .|.++=|.|. .
T Consensus 14 g~~i~~~tayD~------~sArl~e~aG~d~i~vGds~~~~~lG~~Dt~~vtl~em~~h~~~V~r~~~~p~vvaD~pf-g 86 (264)
T PRK00311 14 GEKIVMLTAYDY------PFAKLFDEAGVDVILVGDSLGMVVLGYDSTLPVTLDDMIYHTKAVARGAPRALVVADMPF-G 86 (264)
T ss_pred CCCEEEEeCCCH------HHHHHHHHcCCCEEEECHHHHHHHcCCCCCCCcCHHHHHHHHHHHHhcCCCCcEEEeCCC-C
Confidence 343345566553 346677788999998642 223346789999999999987 5778888883 4
Q ss_pred CCCCCHHH----HHHHhcCCCeEEEeccCchh---hHhhhhCCceEE
Q 018253 195 GQDIPPRV----IHTMAQSPNLAGVKECVGND---RVEHYTGNGIVV 234 (359)
Q Consensus 195 g~~ls~e~----l~~La~~pnivGiK~ss~d~---~l~~~~~~~~~v 234 (359)
++..+++. ..++.+.-.+.|+|.+.+.. +++...+.++.|
T Consensus 87 ~y~~~~~~av~~a~r~~~~aGa~aVkiEdg~~~~~~I~al~~agIpV 133 (264)
T PRK00311 87 SYQASPEQALRNAGRLMKEAGAHAVKLEGGEEVAETIKRLVERGIPV 133 (264)
T ss_pred CccCCHHHHHHHHHHHHHHhCCeEEEEcCcHHHHHHHHHHHHCCCCE
Confidence 66677754 34455556899999988752 455544445444
No 227
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=87.97 E-value=21 Score=32.62 Aligned_cols=163 Identities=13% Similarity=0.085 Sum_probs=94.5
Q ss_pred cCCceEEeeecCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCC
Q 018253 58 KALRLITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSN 137 (359)
Q Consensus 58 ~~~Gi~~al~TPF~~dg~ID~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~ 137 (359)
...++++.+-.. |.+...+.++.+++.|+.-+=+-=++ + .-.+.++...+..+. ++++|+|+-
T Consensus 8 ~~~~~~~v~r~~-------~~~~~~~~~~a~~~gGi~~iEvt~~~-~-------~~~~~i~~l~~~~~~--~~~iGaGTV 70 (206)
T PRK09140 8 TKLPLIAILRGI-------TPDEALAHVGALIEAGFRAIEIPLNS-P-------DPFDSIAALVKALGD--RALIGAGTV 70 (206)
T ss_pred HhCCEEEEEeCC-------CHHHHHHHHHHHHHCCCCEEEEeCCC-c-------cHHHHHHHHHHHcCC--CcEEeEEec
Confidence 345666665443 88999999999999999977554222 2 233356666665542 588899987
Q ss_pred CHHHHHHHHHHHHhCCCCEEEEcCCCCCCCCHHHHHHHHHHHHhcCCeEEEeCCCCCCCCCCHHHHHHHhc-CCCeEEEe
Q 018253 138 STREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSMGPTIIYNVPSRTGQDIPPRVIHTMAQ-SPNLAGVK 216 (359)
Q Consensus 138 st~~ai~la~~a~~~Gadav~v~pP~y~~~s~~~l~~yf~~Ia~a~PiiiYn~P~~tg~~ls~e~l~~La~-~pnivGiK 216 (359)
-+.+. ++.|.++|||.++. |.+ ..++.++.+.. ..|++ | | ..+++.+.+-.+ --.++++
T Consensus 71 ~~~~~---~~~a~~aGA~fivs--p~~----~~~v~~~~~~~--~~~~~----~---G-~~t~~E~~~A~~~Gad~vk~- 130 (206)
T PRK09140 71 LSPEQ---VDRLADAGGRLIVT--PNT----DPEVIRRAVAL--GMVVM----P---G-VATPTEAFAALRAGAQALKL- 130 (206)
T ss_pred CCHHH---HHHHHHcCCCEEEC--CCC----CHHHHHHHHHC--CCcEE----c---c-cCCHHHHHHHHHcCCCEEEE-
Confidence 77664 46677899998776 433 35566554421 12222 2 3 355555554443 2345544
Q ss_pred ccCch---hhHhh---hhC--CceEEEecCCchhhhhhhhcCCceeecc
Q 018253 217 ECVGN---DRVEH---YTG--NGIVVWSGNDDQCHDARWNHGATGVISV 257 (359)
Q Consensus 217 ~ss~d---~~l~~---~~~--~~~~v~~G~d~~~~~~~l~~Ga~G~is~ 257 (359)
..+.. ..+.. ... -.+-...|-...-+...+..|++|+..+
T Consensus 131 Fpa~~~G~~~l~~l~~~~~~~ipvvaiGGI~~~n~~~~~~aGa~~vav~ 179 (206)
T PRK09140 131 FPASQLGPAGIKALRAVLPPDVPVFAVGGVTPENLAPYLAAGAAGFGLG 179 (206)
T ss_pred CCCCCCCHHHHHHHHhhcCCCCeEEEECCCCHHHHHHHHHCCCeEEEEe
Confidence 11111 12322 222 2344455776555566788999987644
No 228
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=87.92 E-value=2.6 Score=38.67 Aligned_cols=78 Identities=15% Similarity=0.221 Sum_probs=52.9
Q ss_pred HHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCCCHHHHHHHHHHHHhCCCCEEEEc
Q 018253 81 YDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHI 160 (359)
Q Consensus 81 l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~st~~ai~la~~a~~~Gadav~v~ 160 (359)
...+++.+.+.|++.+++.+.+-++..-. .-.++++.+.+.+ ++||+++=|-.+.++..++. +.|+|++++.
T Consensus 148 ~~~~~~~~~~~ga~~iii~~~~~~g~~~g--~~~~~i~~i~~~~--~ipvi~~GGi~~~~di~~~~----~~Ga~gv~vg 219 (234)
T cd04732 148 LEELAKRFEELGVKAIIYTDISRDGTLSG--PNFELYKELAAAT--GIPVIASGGVSSLDDIKALK----ELGVAGVIVG 219 (234)
T ss_pred HHHHHHHHHHcCCCEEEEEeecCCCccCC--CCHHHHHHHHHhc--CCCEEEecCCCCHHHHHHHH----HCCCCEEEEe
Confidence 34567777899999999987654444322 2245666666655 58999987777777655443 3599999998
Q ss_pred CCCCCC
Q 018253 161 NPYYGK 166 (359)
Q Consensus 161 pP~y~~ 166 (359)
.-.|..
T Consensus 220 ~~~~~~ 225 (234)
T cd04732 220 KALYEG 225 (234)
T ss_pred HHHHcC
Confidence 766543
No 229
>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302.
Probab=87.91 E-value=1.4 Score=44.10 Aligned_cols=72 Identities=17% Similarity=0.192 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHCCCCEEEEccCccCcCC-CCHHHHHHHHHHHHHhhCCCcEEEEecCCCCHHHHHHHHHHHHhCCCCEE
Q 018253 79 EAYDDLVNMQIVNGAEGMIVGGTTGEGQL-MSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAA 157 (359)
Q Consensus 79 ~~l~~li~~li~~Gv~Gl~v~GstGE~~~-LT~~Er~~li~~~v~~~~grvpViagvg~~st~~ai~la~~a~~~Gadav 157 (359)
....++++.++++|++-|++-|+|=+..+ -...+...+.+.. +.. ++|||+|-. .+.+++ +++.+.|||+|
T Consensus 142 ~~~~e~a~~l~eAGad~I~ihgrt~~q~~~sg~~~p~~l~~~i-~~~--~IPVI~G~V-~t~e~A----~~~~~aGaDgV 213 (369)
T TIGR01304 142 QNAREIAPIVVKAGADLLVIQGTLVSAEHVSTSGEPLNLKEFI-GEL--DVPVIAGGV-NDYTTA----LHLMRTGAAGV 213 (369)
T ss_pred cCHHHHHHHHHHCCCCEEEEeccchhhhccCCCCCHHHHHHHH-HHC--CCCEEEeCC-CCHHHH----HHHHHcCCCEE
Confidence 35667888889999999999988722111 1112234444433 333 689998332 234444 44555899999
Q ss_pred E
Q 018253 158 L 158 (359)
Q Consensus 158 ~ 158 (359)
+
T Consensus 214 ~ 214 (369)
T TIGR01304 214 I 214 (369)
T ss_pred E
Confidence 9
No 230
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=87.86 E-value=8.6 Score=36.93 Aligned_cols=98 Identities=15% Similarity=0.097 Sum_probs=77.5
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCCCHHHHHHHHHHHHhCCC
Q 018253 75 RFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGM 154 (359)
Q Consensus 75 ~ID~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~st~~ai~la~~a~~~Ga 154 (359)
+.|.+-+.++++.+.+.|++.|.+.-|+|- +++.+-.++++.+.+... .+|+=++. +++..-++..+-.|.++|+
T Consensus 143 r~~~~~~~~~~~~~~~~G~~~i~l~DT~G~---~~P~~v~~l~~~l~~~~~-~~~i~~H~-Hnd~Gla~AN~laA~~aGa 217 (280)
T cd07945 143 RDSPDYVFQLVDFLSDLPIKRIMLPDTLGI---LSPFETYTYISDMVKRYP-NLHFDFHA-HNDYDLAVANVLAAVKAGI 217 (280)
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEecCCCCC---CCHHHHHHHHHHHHhhCC-CCeEEEEe-CCCCCHHHHHHHHHHHhCC
Confidence 789999999999999999999999999995 688888888888887653 56765554 6788899999999999999
Q ss_pred CEEEEcCCCCC----CCCHHHHHHHHH
Q 018253 155 HAALHINPYYG----KTSLEGLISHFD 177 (359)
Q Consensus 155 dav~v~pP~y~----~~s~~~l~~yf~ 177 (359)
+.+=..---.. ..+-|+++.+++
T Consensus 218 ~~vd~s~~GlGe~aGN~~~E~~v~~L~ 244 (280)
T cd07945 218 KGLHTTVNGLGERAGNAPLASVIAVLK 244 (280)
T ss_pred CEEEEecccccccccCccHHHHHHHHH
Confidence 98866543332 234566666653
No 231
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=87.82 E-value=25 Score=33.27 Aligned_cols=35 Identities=14% Similarity=0.204 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHH
Q 018253 80 AYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTV 121 (359)
Q Consensus 80 ~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v 121 (359)
++.++++.+.++|++|+++. -|..+|..++++.+.
T Consensus 103 G~e~f~~~~~~aGvdgviip-------Dlp~ee~~~~~~~~~ 137 (256)
T TIGR00262 103 GVEEFYAKCKEVGVDGVLVA-------DLPLEESGDLVEAAK 137 (256)
T ss_pred hHHHHHHHHHHcCCCEEEEC-------CCChHHHHHHHHHHH
Confidence 45666666667777776654 234455555444443
No 232
>KOG0538 consensus Glycolate oxidase [Energy production and conversion]
Probab=87.79 E-value=3.9 Score=39.76 Aligned_cols=102 Identities=15% Similarity=0.158 Sum_probs=69.0
Q ss_pred CCceEEeeecCCCCCCCCCHHHHHHH------------------HHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHH
Q 018253 59 ALRLITAIKTPYLPDGRFDLEAYDDL------------------VNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHT 120 (359)
Q Consensus 59 ~~Gi~~al~TPF~~dg~ID~~~l~~l------------------i~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~ 120 (359)
-.|+-..+.+++++ +++++-++.+ ...-++.|++||+|--..|-..--+..- ++.+..+
T Consensus 195 ~sg~~~~~~~~id~--Sl~W~Di~wLr~~T~LPIvvKGilt~eDA~~Ave~G~~GIIVSNHGgRQlD~vpAt-I~~L~Ev 271 (363)
T KOG0538|consen 195 DSGLAAYVSSQIDP--SLSWKDIKWLRSITKLPIVVKGVLTGEDARKAVEAGVAGIIVSNHGGRQLDYVPAT-IEALPEV 271 (363)
T ss_pred chhhhhhhhcCCCC--CCChhhhHHHHhcCcCCeEEEeecccHHHHHHHHhCCceEEEeCCCccccCcccch-HHHHHHH
Confidence 45666666666643 4444443322 3445689999999998888877666654 5566677
Q ss_pred HHhhCCCcEEEEecCCCCHHHHHHHHHHHHhCCCCEEEEcCCCCCCC
Q 018253 121 VNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYYGKT 167 (359)
Q Consensus 121 v~~~~grvpViagvg~~st~~ai~la~~a~~~Gadav~v~pP~y~~~ 167 (359)
++++.+|+||+.-=|--+-.+. -.|-++||.+|.+--|+.+..
T Consensus 272 v~aV~~ri~V~lDGGVR~G~DV----lKALALGAk~VfiGRP~v~gL 314 (363)
T KOG0538|consen 272 VKAVEGRIPVFLDGGVRRGTDV----LKALALGAKGVFIGRPIVWGL 314 (363)
T ss_pred HHHhcCceEEEEecCcccchHH----HHHHhcccceEEecCchheee
Confidence 8899999999983332222222 235669999999999987653
No 233
>COG1850 RbcL Ribulose 1,5-bisphosphate carboxylase, large subunit [Carbohydrate transport and metabolism]
Probab=87.77 E-value=7.1 Score=39.20 Aligned_cols=136 Identities=13% Similarity=0.055 Sum_probs=87.3
Q ss_pred eecCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHH----hhCCCcEEEEecCCCCHHH
Q 018253 66 IKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVN----CFGASVKVIGNTGSNSTRE 141 (359)
Q Consensus 66 l~TPF~~dg~ID~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~----~~~grvpViagvg~~st~~ 141 (359)
+-|-+++.--++.+...+++--++..|||=+====.--+....-.+||...+-.+++ .++.++--.+++++. ++|
T Consensus 158 lgtivKPklGl~~e~~a~~~yE~~~GGvD~iKDDEnl~s~~f~~~e~R~~~~m~~i~~aeaeTGekk~y~~NITa~-~~E 236 (429)
T COG1850 158 LGTIVKPKLGLSPEEYAELAYELLSGGVDFIKDDENLTSPPFNRFEERVAKIMEAIDKAEAETGEKKMYAVNITAP-CEE 236 (429)
T ss_pred cccccCcccCCCHHHHHHHHHHHHhcCcceecchhhccCcccccHHHHHHHHHHHHHHHHHhhCceEEEEeeccCC-HHH
Confidence 344556666689999999999999999995422112223445567888766555555 345555557799987 999
Q ss_pred HHHHHHHHHhCCCCEEEEcCCCCCCCCHHHHHHHHHHHHhcCCeEEEeCCCC-------CCCCCCHHHHHHHh
Q 018253 142 AIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSMGPTIIYNVPSR-------TGQDIPPRVIHTMA 207 (359)
Q Consensus 142 ai~la~~a~~~Gadav~v~pP~y~~~s~~~l~~yf~~Ia~a~PiiiYn~P~~-------tg~~ls~e~l~~La 207 (359)
..+.++.|+++|++++|+= +.... =...+|+++. +..++.|+=.+.. -+..++.-+++++.
T Consensus 237 M~rrae~a~elG~~~~mid---i~~~G-~~a~q~lre~-~d~gl~ihaHramh~a~tr~p~~Gis~~vlaK~~ 304 (429)
T COG1850 237 MMRRAELAAELGANYVMID---IVVTG-FTALQYLRED-EDIGLAIHAHRAMHAAFTRSPNHGISFLVLAKLL 304 (429)
T ss_pred HHHHHHHHHHcCCCEEEEE---EEecc-cHHHHHHHhc-ccCCceEEechhhhhhhhcCCCCCccHHHHHHHH
Confidence 9999999999999999985 22211 2356677776 3333333322111 12345666666554
No 234
>COG1609 PurR Transcriptional regulators [Transcription]
Probab=87.73 E-value=16 Score=35.71 Aligned_cols=108 Identities=15% Similarity=0.038 Sum_probs=74.9
Q ss_pred CHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCc-EEEEecCCCCHHHHHHHHHHHHhCC--
Q 018253 77 DLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASV-KVIGNTGSNSTREAIHATEQGFAVG-- 153 (359)
Q Consensus 77 D~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grv-pViagvg~~st~~ai~la~~a~~~G-- 153 (359)
|+++.+..+++|++.|.+-+.+.+..- ...+..+|.+-++.+.+..+-.. +..+..+..+.+...+.++.....+
T Consensus 159 n~~~~~~a~~~L~~~G~~~i~~i~~~~--~~~~~~~R~~Gf~~al~~~~~~~~~~~i~~~~~~~~~g~~~~~~ll~~~~~ 236 (333)
T COG1609 159 NFAGAYLATEHLIELGHRRIAFIGGPL--DSSASRERLEGYRAALREAGLPINPEWIVEGDFSEESGYEAAERLLARGEP 236 (333)
T ss_pred hHHHHHHHHHHHHHCCCceEEEEeCCC--ccccHhHHHHHHHHHHHHCCCCCCcceEEecCCChHHHHHHHHHHHhcCCC
Confidence 678899999999999988766665544 66677999999988888776655 5666666668888888888888755
Q ss_pred -CCEEEEcCCCCCCCCHHHHHHHHHHHHhcCC----eEEEeC
Q 018253 154 -MHAALHINPYYGKTSLEGLISHFDSVLSMGP----TIIYNV 190 (359)
Q Consensus 154 -adav~v~pP~y~~~s~~~l~~yf~~Ia~a~P----iiiYn~ 190 (359)
.+|++...-.. .-+++++.++..-..| |+=||.
T Consensus 237 ~ptAif~~nD~~----Alg~l~~~~~~g~~vP~disviGfDd 274 (333)
T COG1609 237 RPTAIFCANDLM----ALGALRALRELGLRVPEDLSVIGFDD 274 (333)
T ss_pred CCcEEEEcCcHH----HHHHHHHHHHcCCCCCCeeEEEEecC
Confidence 67888763222 2334444433332245 666765
No 235
>cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=87.70 E-value=6 Score=36.28 Aligned_cols=104 Identities=17% Similarity=0.118 Sum_probs=62.0
Q ss_pred HHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCCCHHHHHHHHHHHHhCCCCEEE
Q 018253 79 EAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAAL 158 (359)
Q Consensus 79 ~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~st~~ai~la~~a~~~Gadav~ 158 (359)
+...+.++.+.+.|+++|.+.+. + +. .+++.+.+ ..++++..+.. . +.++.+.+.|+|.+.
T Consensus 67 ~~~~~~~~~~~~~g~d~v~l~~~--~----~~----~~~~~~~~---~~i~~i~~v~~--~----~~~~~~~~~gad~i~ 127 (236)
T cd04730 67 PDFEALLEVALEEGVPVVSFSFG--P----PA----EVVERLKA---AGIKVIPTVTS--V----EEARKAEAAGADALV 127 (236)
T ss_pred cCHHHHHHHHHhCCCCEEEEcCC--C----CH----HHHHHHHH---cCCEEEEeCCC--H----HHHHHHHHcCCCEEE
Confidence 45667788888999999998654 2 22 23333332 25788776642 2 556677778999988
Q ss_pred EcCCCC---CCCCHHHHHHHHHHHHhc--CCeEEEeCCCCCCCCCC-HHHHHHHhc
Q 018253 159 HINPYY---GKTSLEGLISHFDSVLSM--GPTIIYNVPSRTGQDIP-PRVIHTMAQ 208 (359)
Q Consensus 159 v~pP~y---~~~s~~~l~~yf~~Ia~a--~PiiiYn~P~~tg~~ls-~e~l~~La~ 208 (359)
+.++.- .........++++++.+. .|+++= - .++ ++.+.++.+
T Consensus 128 ~~~~~~~G~~~~~~~~~~~~i~~i~~~~~~Pvi~~-----G--GI~~~~~v~~~l~ 176 (236)
T cd04730 128 AQGAEAGGHRGTFDIGTFALVPEVRDAVDIPVIAA-----G--GIADGRGIAAALA 176 (236)
T ss_pred EeCcCCCCCCCccccCHHHHHHHHHHHhCCCEEEE-----C--CCCCHHHHHHHHH
Confidence 865421 111111345667777664 576652 1 354 477777554
No 236
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=87.66 E-value=20 Score=32.01 Aligned_cols=168 Identities=13% Similarity=0.069 Sum_probs=91.0
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEc---cCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCCCHHHHHHHHHHHHh
Q 018253 75 RFDLEAYDDLVNMQIVNGAEGMIVG---GTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFA 151 (359)
Q Consensus 75 ~ID~~~l~~li~~li~~Gv~Gl~v~---GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~st~~ai~la~~a~~ 151 (359)
..|++.+.+.++.+.+.|++-+=+. |..-....++. +.++.+.+.. +.|+.+++...... +.++.+.+
T Consensus 7 ~~~~~~~~~~~~~~~~~g~d~i~~~~~Dg~~~~~~~~~~----~~v~~i~~~~--~~~v~v~lm~~~~~---~~~~~~~~ 77 (210)
T TIGR01163 7 SADFARLGEEVKAVEEAGADWIHVDVMDGHFVPNLTFGP----PVLEALRKYT--DLPIDVHLMVENPD---RYIEDFAE 77 (210)
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCcccCH----HHHHHHHhcC--CCcEEEEeeeCCHH---HHHHHHHH
Confidence 4788999999999999999987664 12222222333 3444444332 45776777666554 56778889
Q ss_pred CCCCEEEEcCCCCCCCCHHHHHHHHHHHHhc-CCeEEEeCCCCCCCCCCHHHHHHHhcCCCeEEE--ecc--Cch-----
Q 018253 152 VGMHAALHINPYYGKTSLEGLISHFDSVLSM-GPTIIYNVPSRTGQDIPPRVIHTMAQSPNLAGV--KEC--VGN----- 221 (359)
Q Consensus 152 ~Gadav~v~pP~y~~~s~~~l~~yf~~Ia~a-~PiiiYn~P~~tg~~ls~e~l~~La~~pnivGi--K~s--s~d----- 221 (359)
+|+|++.+.. ..+ ++..++.+.+-.. ..+++--.| .-+.+.++++.+....+++ .+. ++.
T Consensus 78 ~gadgv~vh~----~~~-~~~~~~~~~~~~~g~~~~~~~~~-----~t~~e~~~~~~~~~d~i~~~~~~~g~tg~~~~~~ 147 (210)
T TIGR01163 78 AGADIITVHP----EAS-EHIHRLLQLIKDLGAKAGIVLNP-----ATPLEFLEYVLPDVDLVLLMSVNPGFGGQKFIPD 147 (210)
T ss_pred cCCCEEEEcc----CCc-hhHHHHHHHHHHcCCcEEEEECC-----CCCHHHHHHHHhhCCEEEEEEEcCCCCcccccHH
Confidence 9999988742 111 3344444444333 233332222 2236777777654443333 111 111
Q ss_pred --hh---HhhhhC---CceEE--EecCCchhhhhhhhcCCceeecccccc
Q 018253 222 --DR---VEHYTG---NGIVV--WSGNDDQCHDARWNHGATGVISVTSNL 261 (359)
Q Consensus 222 --~~---l~~~~~---~~~~v--~~G~d~~~~~~~l~~Ga~G~is~~an~ 261 (359)
.. ++++.+ +++.+ -.|-...-+...+..|++|++.+.+-+
T Consensus 148 ~~~~i~~i~~~~~~~~~~~~i~v~GGI~~env~~l~~~gad~iivgsai~ 197 (210)
T TIGR01163 148 TLEKIREVRKMIDENGLSILIEVDGGVNDDNARELAEAGADILVAGSAIF 197 (210)
T ss_pred HHHHHHHHHHHHHhcCCCceEEEECCcCHHHHHHHHHcCCCEEEEChHHh
Confidence 12 222222 22333 334444444444678999999886544
No 237
>PRK08999 hypothetical protein; Provisional
Probab=87.65 E-value=22 Score=34.22 Aligned_cols=111 Identities=9% Similarity=0.083 Sum_probs=62.9
Q ss_pred HHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCC-CcEEE----------------------------
Q 018253 81 YDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGA-SVKVI---------------------------- 131 (359)
Q Consensus 81 l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~g-rvpVi---------------------------- 131 (359)
+...++.+++.|++.+.+= -..++.+|..++++...+.... ++++|
T Consensus 146 ~~~~~~~~l~~g~~~vqlR-----~k~~~~~~~~~~~~~l~~~~~~~~~~liind~~~la~~~~~~GvHl~~~d~~~~~~ 220 (312)
T PRK08999 146 FLARLERALAAGIRLIQLR-----APQLPPAAYRALARAALGLCRRAGAQLLLNGDPELAEDLGADGVHLTSAQLAALAA 220 (312)
T ss_pred HHHHHHHHHHCCCcEEEEe-----CCCCCHHHHHHHHHHHHHHHHHhCCEEEEECcHHHHHhcCCCEEEcChhhcChHhh
Confidence 5556667778999887762 2346788888888777764322 34444
Q ss_pred --------EecCCCCHHHHHHHHHHHHhCCCCEEEEcCCCCCCCCH---HH-HHHHHHHHHhc--CCeEEEeCCCCCCCC
Q 018253 132 --------GNTGSNSTREAIHATEQGFAVGMHAALHINPYYGKTSL---EG-LISHFDSVLSM--GPTIIYNVPSRTGQD 197 (359)
Q Consensus 132 --------agvg~~st~~ai~la~~a~~~Gadav~v~pP~y~~~s~---~~-l~~yf~~Ia~a--~PiiiYn~P~~tg~~ 197 (359)
+|++..+.++ ++.|.+.|+|.+.+.| .|...|. .. =.+.++.+++. .|++.- | .
T Consensus 221 r~~~~~~~ig~S~h~~~~----~~~a~~~~~dyi~~gp-vf~t~tk~~~~~~g~~~~~~~~~~~~~Pv~Ai------G-G 288 (312)
T PRK08999 221 RPLPAGRWVAASCHDAEE----LARAQRLGVDFAVLSP-VQPTASHPGAAPLGWEGFAALIAGVPLPVYAL------G-G 288 (312)
T ss_pred ccCCCCCEEEEecCCHHH----HHHHHhcCCCEEEECC-CcCCCCCCCCCCCCHHHHHHHHHhCCCCEEEE------C-C
Confidence 4444444443 3455667888777664 3322111 00 13445555554 466544 2 3
Q ss_pred CCHHHHHHHhc
Q 018253 198 IPPRVIHTMAQ 208 (359)
Q Consensus 198 ls~e~l~~La~ 208 (359)
|+++.+.++.+
T Consensus 289 I~~~~~~~~~~ 299 (312)
T PRK08999 289 LGPGDLEEARE 299 (312)
T ss_pred CCHHHHHHHHH
Confidence 67777777664
No 238
>PRK08645 bifunctional homocysteine S-methyltransferase/5,10-methylenetetrahydrofolate reductase protein; Reviewed
Probab=87.61 E-value=22 Score=38.01 Aligned_cols=131 Identities=14% Similarity=0.111 Sum_probs=78.4
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEccC----ccCcC------CCCHHHHHHHHHHHHHhh-------CCCcEEEEecCC-
Q 018253 75 RFDLEAYDDLVNMQIVNGAEGMIVGGT----TGEGQ------LMSWDEHIMLIGHTVNCF-------GASVKVIGNTGS- 136 (359)
Q Consensus 75 ~ID~~~l~~li~~li~~Gv~Gl~v~Gs----tGE~~------~LT~~Er~~li~~~v~~~-------~grvpViagvg~- 136 (359)
.-|..+++..+..+.+.|+++|+++.. +|+.. .++-.+-.++++..-+.. .++..+.+|+..
T Consensus 392 d~n~~~l~~~L~~~~~~Gv~nILaLrGD~p~~g~~~~~~~vfd~~a~dLv~~ir~~~~g~~~~g~~~~~~~~f~ig~A~~ 471 (612)
T PRK08645 392 DRNLIGLQSHLLGLHALGIRNVLAITGDPAKVGDFPGATSVYDLNSFGLIKLIKQLNEGISYSGKPLGKKTNFSIGGAFN 471 (612)
T ss_pred CcCHHHHHHHHHHHHHcCCceEEEccCCCCCCCCCCCCCCCccccHHHHHHHHHHHhCCCCcCCCccCCCCceeeeEEeC
Confidence 357788899888888999999977654 35443 134444444444321110 012234444433
Q ss_pred ---CCHHHHHHHHHHHHhCCCCEEEEcCCCCCCCCHHHHHHHHHHHHhc-CCeEEEeCCC------------CCCCCCCH
Q 018253 137 ---NSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSM-GPTIIYNVPS------------RTGQDIPP 200 (359)
Q Consensus 137 ---~st~~ai~la~~a~~~Gadav~v~pP~y~~~s~~~l~~yf~~Ia~a-~PiiiYn~P~------------~tg~~ls~ 200 (359)
.+.+.-++..+.=.++|||.++.. |+| +.+.+.+|.+.+... .||+..=.|- ..|+.++.
T Consensus 472 P~~~~~~~d~~~L~~Ki~aGAdf~iTQ-~~f---d~~~~~~~~~~~~~~~vpIi~GImPi~s~k~~~~~~~~~~Gv~vP~ 547 (612)
T PRK08645 472 PNVRNLDKEVKRLEKKIEAGADYFITQ-PVY---DEELIEELLEATKHLGVPIFIGIMPLVSYRNAEFLHNEVPGITLPE 547 (612)
T ss_pred CCCCChHHHHHHHHHHHHcCCCEEEec-ccC---CHHHHHHHHHHHhcCCCCEEEEeeecCCHHHHHHHHhCCCCCCCCH
Confidence 356666666666678899976665 666 456666666665433 5776655542 23777777
Q ss_pred HHHHHHhcC
Q 018253 201 RVIHTMAQS 209 (359)
Q Consensus 201 e~l~~La~~ 209 (359)
+++++|.+.
T Consensus 548 ~l~~~l~~~ 556 (612)
T PRK08645 548 EIRERMRAV 556 (612)
T ss_pred HHHHHHHhc
Confidence 777777653
No 239
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=87.60 E-value=12 Score=35.28 Aligned_cols=91 Identities=16% Similarity=0.130 Sum_probs=49.3
Q ss_pred HHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEe---cCCCCHHHHHHHHHHHHhCCCCEEEE
Q 018253 83 DLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGN---TGSNSTREAIHATEQGFAVGMHAALH 159 (359)
Q Consensus 83 ~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViag---vg~~st~~ai~la~~a~~~Gadav~v 159 (359)
+-++...++|++.+-+.-+..|. ++-.+.++.+.+. + ..|.++ ++..+.+..+++++.+.++|+|.+.+
T Consensus 89 ~~i~~a~~~g~~~iri~~~~s~~-----~~~~~~i~~ak~~-G--~~v~~~~~~~~~~~~~~~~~~~~~~~~~G~d~i~l 160 (263)
T cd07943 89 DDLKMAADLGVDVVRVATHCTEA-----DVSEQHIGAARKL-G--MDVVGFLMMSHMASPEELAEQAKLMESYGADCVYV 160 (263)
T ss_pred HHHHHHHHcCCCEEEEEechhhH-----HHHHHHHHHHHHC-C--CeEEEEEEeccCCCHHHHHHHHHHHHHcCCCEEEE
Confidence 33555666777776665555543 2233333333321 1 223222 34456666777777777777775543
Q ss_pred cCCCCCCCCHHHHHHHHHHHHhc
Q 018253 160 INPYYGKTSLEGLISHFDSVLSM 182 (359)
Q Consensus 160 ~pP~y~~~s~~~l~~yf~~Ia~a 182 (359)
+=.+...+++++.+.++.+.+.
T Consensus 161 -~DT~G~~~P~~v~~lv~~l~~~ 182 (263)
T cd07943 161 -TDSAGAMLPDDVRERVRALREA 182 (263)
T ss_pred -cCCCCCcCHHHHHHHHHHHHHh
Confidence 3344455666666666666655
No 240
>cd01302 Cyclic_amidohydrolases Cyclic amidohydrolases, including hydantoinase, dihydropyrimidinase, allantoinase, and dihydroorotase, are involved in the metabolism of pyrimidines and purines, sharing the property of hydrolyzing the cyclic amide bond of each substrate to the corresponding N-carbamyl amino acids. Allantoinases catalyze the degradation of purines, while dihydropyrimidinases and hydantoinases, a microbial counterpart of dihydropyrimidinase, are involved in pyrimidine degradation. Dihydroorotase participates in the de novo synthesis of pyrimidines.
Probab=87.59 E-value=3.4 Score=40.46 Aligned_cols=98 Identities=15% Similarity=-0.035 Sum_probs=65.6
Q ss_pred HHHHCCCCEEEEcc--CccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEe----------------cCCCCHHHHHHHHHH
Q 018253 87 MQIVNGAEGMIVGG--TTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGN----------------TGSNSTREAIHATEQ 148 (359)
Q Consensus 87 ~li~~Gv~Gl~v~G--stGE~~~LT~~Er~~li~~~v~~~~grvpViag----------------vg~~st~~ai~la~~ 148 (359)
.+.+.|+.|+-+.. ++|....++.++-.++++.+.+. ..||+++ +.+.|+.+++++++.
T Consensus 89 ~l~~~Gv~g~K~f~~~~~~~~~~~~~~~l~~~~~~~~~~---g~~v~~H~Er~~~la~~~g~~l~i~Hiss~~~le~i~~ 165 (337)
T cd01302 89 KLFDAGINSLKVFMNYYFGELFDVDDGTLMRTFLEIASR---GGPVMVHAERAAQLAEEAGANVHIAHVSSGEALELIKF 165 (337)
T ss_pred HHHHcCCcEEEEEEeccCCCccccCHHHHHHHHHHHHhc---CCeEEEeHHHHHHHHHHhCCcEEEEeCCCHHHHHHHHH
Confidence 34678999987664 34443367888888888776652 2344433 344567899999999
Q ss_pred HHhCCCCEEEEcCCCCCCCCHHHHHHHHHHHHhcCCeEEEeCCCCC
Q 018253 149 GFAVGMHAALHINPYYGKTSLEGLISHFDSVLSMGPTIIYNVPSRT 194 (359)
Q Consensus 149 a~~~Gadav~v~pP~y~~~s~~~l~~yf~~Ia~a~PiiiYn~P~~t 194 (359)
|++.|.+.-.=+.|+|.-.+.+.+. ...+.+-.|-|-++
T Consensus 166 ak~~g~~vt~ev~ph~L~l~~~~~~-------~~~~~~k~~Pplr~ 204 (337)
T cd01302 166 AKNKGVKVTCEVCPHHLFLDESMLR-------LNGAWGKVNPPLRS 204 (337)
T ss_pred HHHCCCcEEEEcChhhheeCHHHhh-------CCCceEEEeCCCCC
Confidence 9988988777778888777766541 22455666766554
No 241
>PRK00115 hemE uroporphyrinogen decarboxylase; Validated
Probab=87.47 E-value=21 Score=35.13 Aligned_cols=94 Identities=13% Similarity=0.180 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHHhCCCCEEEEcCCCCCCCCHHHHHH----HHHHHHhc----CC-e-EEEeCCCCCCCCCCHHHHHHHhc
Q 018253 139 TREAIHATEQGFAVGMHAALHINPYYGKTSLEGLIS----HFDSVLSM----GP-T-IIYNVPSRTGQDIPPRVIHTMAQ 208 (359)
Q Consensus 139 t~~ai~la~~a~~~Gadav~v~pP~y~~~s~~~l~~----yf~~Ia~a----~P-i-iiYn~P~~tg~~ls~e~l~~La~ 208 (359)
++..+++++...++|||.+++.-|...-.|++...+ |.++|.+. .| + ++|. ...+ ...+..+.+
T Consensus 185 t~~~~~~~~~~~eaGad~i~i~d~~~~~lsp~~f~ef~~P~~k~i~~~i~~~~~~~~ilh~-cg~~-----~~~~~~~~~ 258 (346)
T PRK00115 185 ADATIAYLNAQIEAGAQAVQIFDSWAGALSPADYREFVLPYMKRIVAELKREHPDVPVILF-GKGA-----GELLEAMAE 258 (346)
T ss_pred HHHHHHHHHHHHHcCCCEEEEecCccccCCHHHHHHHHHHHHHHHHHHHHHhCCCCCEEEE-cCCc-----HHHHHHHHh
Confidence 444677788788899999998888555567666554 44666654 22 2 3343 2222 134666666
Q ss_pred CC-CeEEEeccCchh-hHhhhhCCceEEEecCC
Q 018253 209 SP-NLAGVKECVGND-RVEHYTGNGIVVWSGND 239 (359)
Q Consensus 209 ~p-nivGiK~ss~d~-~l~~~~~~~~~v~~G~d 239 (359)
.+ +++++=.. .|. ..++..+++..+..+.|
T Consensus 259 ~~~~~is~d~~-~dl~~~k~~~g~~~~i~Gni~ 290 (346)
T PRK00115 259 TGADVVGLDWT-VDLAEARRRVGDKKALQGNLD 290 (346)
T ss_pred cCCCEEeeCCC-CCHHHHHHHcCCCeEEEeCCC
Confidence 43 56655332 332 34444555565555554
No 242
>cd01295 AdeC Adenine deaminase (AdeC) directly deaminates adenine to form hypoxanthine. This reaction is part of one of the adenine salvage pathways, as well as the degradation pathway. It is important for adenine utilization as a purine, as well as a nitrogen source in bacteria and archea.
Probab=87.46 E-value=2.8 Score=42.41 Aligned_cols=74 Identities=15% Similarity=0.300 Sum_probs=51.5
Q ss_pred HHHHHHHhCCCCEEEEcCCCCCC-CCHHHHHHHHHHHHhcCCe-EEEeCCCC--------CCCCCCHHHHHHHhcCCCeE
Q 018253 144 HATEQGFAVGMHAALHINPYYGK-TSLEGLISHFDSVLSMGPT-IIYNVPSR--------TGQDIPPRVIHTMAQSPNLA 213 (359)
Q Consensus 144 ~la~~a~~~Gadav~v~pP~y~~-~s~~~l~~yf~~Ia~a~Pi-iiYn~P~~--------tg~~ls~e~l~~La~~pniv 213 (359)
++++.|...|...++..|=-... .+.+++ +++.+.++..|+ +++..|.. .|..+..+.++++.+.|.|+
T Consensus 27 ~~~~~a~~~GvTtvv~~p~~~~~v~g~~~~-~~~~~~a~~~p~~~~~~~p~~vp~t~~e~~g~~~~~~~i~~l~~~~~vv 105 (422)
T cd01295 27 EFAKAVLPHGTTTVIADPHEIANVAGVDGI-EFMLEDAKKTPLDIFWMLPSCVPATPFETSGAELTAEDIKELLEHPEVV 105 (422)
T ss_pred HHHHHHHCCCcEEEEeCCCCCCcCCCHHHH-HHHHHHHhCCCceEEEeCCCcCCCCCCCCCCCcCCHHHHHHHhcCCCCc
Confidence 46888999999888885422222 344544 555556666786 56677752 23456788899999889999
Q ss_pred EEecc
Q 018253 214 GVKEC 218 (359)
Q Consensus 214 GiK~s 218 (359)
|+|+.
T Consensus 106 glgE~ 110 (422)
T cd01295 106 GLGEV 110 (422)
T ss_pred EEEEe
Confidence 99986
No 243
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=87.45 E-value=1.8 Score=39.54 Aligned_cols=83 Identities=23% Similarity=0.227 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCCCHHHHHHHHHHHHhCCCCEEE
Q 018253 79 EAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAAL 158 (359)
Q Consensus 79 ~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~st~~ai~la~~a~~~Gadav~ 158 (359)
+...++++.+.+.|++.|.+-+.+.+..... .-..+.++.+.+. .++||++.=+-.+.+++.++.+. -|+|+|+
T Consensus 138 ~~~~~~~~~l~~~Gvd~i~v~~~~~~~~~~~-~~~~~~~~~i~~~--~~ipvi~~Ggi~~~~d~~~~l~~---~gad~V~ 211 (231)
T cd02801 138 EETLELAKALEDAGASALTVHGRTREQRYSG-PADWDYIAEIKEA--VSIPVIANGDIFSLEDALRCLEQ---TGVDGVM 211 (231)
T ss_pred hHHHHHHHHHHHhCCCEEEECCCCHHHcCCC-CCCHHHHHHHHhC--CCCeEEEeCCCCCHHHHHHHHHh---cCCCEEE
Confidence 5788888889999999999988776542111 1123444455543 36898875444466666555432 3899999
Q ss_pred EcCCCCCCC
Q 018253 159 HINPYYGKT 167 (359)
Q Consensus 159 v~pP~y~~~ 167 (359)
+.-+.+..|
T Consensus 212 igr~~l~~P 220 (231)
T cd02801 212 IGRGALGNP 220 (231)
T ss_pred EcHHhHhCC
Confidence 998888655
No 244
>PRK07094 biotin synthase; Provisional
Probab=87.45 E-value=29 Score=33.60 Aligned_cols=111 Identities=13% Similarity=0.112 Sum_probs=68.3
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCCCHHHHHHHHHHHHhCCC
Q 018253 75 RFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGM 154 (359)
Q Consensus 75 ~ID~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~st~~ai~la~~a~~~Ga 154 (359)
+++.+.+.+.++.+.+.|++.+++. .||-..+..+.-.++++.+.+. ..+.+-..++.. ++ +.++..+++|+
T Consensus 69 ~ls~eei~~~~~~~~~~g~~~i~l~--gG~~~~~~~~~l~~l~~~i~~~--~~l~i~~~~g~~-~~---e~l~~Lk~aG~ 140 (323)
T PRK07094 69 RLSPEEILECAKKAYELGYRTIVLQ--SGEDPYYTDEKIADIIKEIKKE--LDVAITLSLGER-SY---EEYKAWKEAGA 140 (323)
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEEe--cCCCCCCCHHHHHHHHHHHHcc--CCceEEEecCCC-CH---HHHHHHHHcCC
Confidence 4677888888888888899988875 3444556667777777776654 245555555543 23 34455566898
Q ss_pred CEEEEcCCCC--------C-CCCHHHHHHHHHHHHhc-C---CeEEEeCCCC
Q 018253 155 HAALHINPYY--------G-KTSLEGLISHFDSVLSM-G---PTIIYNVPSR 193 (359)
Q Consensus 155 dav~v~pP~y--------~-~~s~~~l~~yf~~Ia~a-~---PiiiYn~P~~ 193 (359)
+.+.+-.=.. . +.+.++..+-.+.+.+. . .-+++..|..
T Consensus 141 ~~v~~glEs~~~~~~~~i~~~~s~~~~~~~i~~l~~~Gi~v~~~~iiGlpge 192 (323)
T PRK07094 141 DRYLLRHETADKELYAKLHPGMSFENRIACLKDLKELGYEVGSGFMVGLPGQ 192 (323)
T ss_pred CEEEeccccCCHHHHHHhCCCCCHHHHHHHHHHHHHcCCeecceEEEECCCC
Confidence 8887633211 1 23556666666655554 2 4466766654
No 245
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=87.43 E-value=11 Score=33.07 Aligned_cols=132 Identities=15% Similarity=0.101 Sum_probs=79.0
Q ss_pred HHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEE---ecCC---------CC------HHHHHHHHH
Q 018253 86 NMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIG---NTGS---------NS------TREAIHATE 147 (359)
Q Consensus 86 ~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpVia---gvg~---------~s------t~~ai~la~ 147 (359)
+.+.+.|.++|=+....+.....-.++..++.+.+.+ . .+.|.. .... .. .+...+.++
T Consensus 2 ~~~~~~G~~~vE~~~~~~~~~~~~~~~~~~~~~~~~~-~--gl~i~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~i~ 78 (213)
T PF01261_consen 2 EAAAEAGFDGVELRFDDGQPWDEKDDEAEELRRLLED-Y--GLKIASLHPPTNFWSPDEENGSANDEREEALEYLKKAID 78 (213)
T ss_dssp HHHHHTTHSEEEEEHHHHSHHTHHHHHHHHHHHHHHH-T--TCEEEEEEEEESSSCTGTTSTTSSSHHHHHHHHHHHHHH
T ss_pred hHHHHcCCCEEEEecCCCcccccchHHHHHHHHHHHH-c--CCeEEEEecccccccccccccCcchhhHHHHHHHHHHHH
Confidence 5567788888887776665444333344444444333 3 344322 1111 11 667788888
Q ss_pred HHHhCCCCEEEEcCC---CCCCCCH----HHHHHHHHHHHhc-----CCeEEEeCCCCCCC-CCCHHHHHHHh-c--CCC
Q 018253 148 QGFAVGMHAALHINP---YYGKTSL----EGLISHFDSVLSM-----GPTIIYNVPSRTGQ-DIPPRVIHTMA-Q--SPN 211 (359)
Q Consensus 148 ~a~~~Gadav~v~pP---~y~~~s~----~~l~~yf~~Ia~a-----~PiiiYn~P~~tg~-~ls~e~l~~La-~--~pn 211 (359)
.|+.+|++.+.+.++ .....+. +.+.+.++.+++. +-+.+.|.|..... ..+.+.+.++. + .||
T Consensus 79 ~a~~lg~~~i~~~~g~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~lE~~~~~~~~~~~~~~~~~~~l~~~~~~~ 158 (213)
T PF01261_consen 79 LAKRLGAKYIVVHSGRYPSGPEDDTEENWERLAENLRELAEIAEEYGVRIALENHPGPFSETPFSVEEIYRLLEEVDSPN 158 (213)
T ss_dssp HHHHHTBSEEEEECTTESSSTTSSHHHHHHHHHHHHHHHHHHHHHHTSEEEEE-SSSSSSSEESSHHHHHHHHHHHTTTT
T ss_pred HHHHhCCCceeecCcccccccCCCHHHHHHHHHHHHHHHHhhhhhhcceEEEecccCccccchhhHHHHHHHHhhcCCCc
Confidence 899999999988877 3433332 4466677777653 47889998865432 23456777766 3 577
Q ss_pred eEEEeccCch
Q 018253 212 LAGVKECVGN 221 (359)
Q Consensus 212 ivGiK~ss~d 221 (359)
+|+-...++
T Consensus 159 -~~i~~D~~h 167 (213)
T PF01261_consen 159 -VGICFDTGH 167 (213)
T ss_dssp -EEEEEEHHH
T ss_pred -ceEEEehHH
Confidence 667665554
No 246
>TIGR01949 AroFGH_arch predicted phospho-2-dehydro-3-deoxyheptonate aldolase. Together these two genes appear to perform the synthesis of 3-dehydroquinate. It is presumed that the substrates and the chemical transformations involved are identical, but this has not yet been proven experimentally.
Probab=87.24 E-value=6.6 Score=37.02 Aligned_cols=94 Identities=18% Similarity=0.157 Sum_probs=58.4
Q ss_pred CceEEee--ecCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhC-CCcEEEEe---
Q 018253 60 LRLITAI--KTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFG-ASVKVIGN--- 133 (359)
Q Consensus 60 ~Gi~~al--~TPF~~dg~ID~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~-grvpViag--- 133 (359)
.+++..+ -+|+-.+. . .+.+...++..++.|++++-+--..|. .+..|..+.++.+.+.+. ..+|+++-
T Consensus 71 ~~~~~~~~~~~~~g~~~-~-~~~~~~~v~~al~~Ga~~v~~~~~~g~---~~~~~~~~~~~~i~~~~~~~g~~liv~~~~ 145 (258)
T TIGR01949 71 VGLIIHLSASTSLSPDP-N-DKRIVTTVEDAIRMGADAVSIHVNVGS---DTEWEQIRDLGMIAEICDDWGVPLLAMMYP 145 (258)
T ss_pred CcEEEEEcCCCCCCCCC-C-cceeeeeHHHHHHCCCCEEEEEEecCC---chHHHHHHHHHHHHHHHHHcCCCEEEEEec
Confidence 3355566 45553222 1 123445688899999998777665553 345666677777777553 45787763
Q ss_pred ----cCCCCHHHHHHH-HHHHHhCCCCEEEE
Q 018253 134 ----TGSNSTREAIHA-TEQGFAVGMHAALH 159 (359)
Q Consensus 134 ----vg~~st~~ai~l-a~~a~~~Gadav~v 159 (359)
++..+. +.++. ++.|.++|||.+-+
T Consensus 146 ~Gvh~~~~~~-~~~~~~~~~a~~~GADyikt 175 (258)
T TIGR01949 146 RGPHIDDRDP-ELVAHAARLGAELGADIVKT 175 (258)
T ss_pred cCcccccccH-HHHHHHHHHHHHHCCCEEec
Confidence 333333 44444 68889999998875
No 247
>TIGR01036 pyrD_sub2 dihydroorotate dehydrogenase, subfamily 2. The subfamilies 1 and 2 share extensive homology, particularly toward the C-terminus. This subfamily has a longer N-terminal region.
Probab=87.17 E-value=5.4 Score=39.33 Aligned_cols=87 Identities=15% Similarity=0.078 Sum_probs=65.2
Q ss_pred CHHHHHHHHHHHHHCCCCEEEEccC----ccCcCCCCHHHHHHHHHHHHHhhC-----CCcEEEEecCCCCH-HHHHHHH
Q 018253 77 DLEAYDDLVNMQIVNGAEGMIVGGT----TGEGQLMSWDEHIMLIGHTVNCFG-----ASVKVIGNTGSNST-REAIHAT 146 (359)
Q Consensus 77 D~~~l~~li~~li~~Gv~Gl~v~Gs----tGE~~~LT~~Er~~li~~~v~~~~-----grvpViagvg~~st-~~ai~la 146 (359)
..+.+.+.++.+-+ .+|++-++=| .|+-..-..+.-.++++.+.+.+. .++||++=++-+-+ ++..+++
T Consensus 152 ~~~dy~~~~~~~~~-~ad~iElNlScPn~~~~~~~~~~~~~~~i~~~V~~~~~~~~~~~~~Pv~vKLsP~~~~~~i~~ia 230 (335)
T TIGR01036 152 AKEDYAACLRKLGP-LADYLVVNVSSPNTPGLRDLQYKAELRDLLTAVKQEQDGLRRVHRVPVLVKIAPDLTESDLEDIA 230 (335)
T ss_pred CHHHHHHHHHHHhh-hCCEEEEEccCCCCCCcccccCHHHHHHHHHHHHHHHHhhhhccCCceEEEeCCCCCHHHHHHHH
Confidence 56788888887654 5899888543 244444456667778888877764 24899999986654 4888999
Q ss_pred HHHHhCCCCEEEEcCCCC
Q 018253 147 EQGFAVGMHAALHINPYY 164 (359)
Q Consensus 147 ~~a~~~Gadav~v~pP~y 164 (359)
+.+.+.|+|++.+++-.+
T Consensus 231 ~~~~~~GadGi~l~NT~~ 248 (335)
T TIGR01036 231 DSLVELGIDGVIATNTTV 248 (335)
T ss_pred HHHHHhCCcEEEEECCCC
Confidence 999999999999998664
No 248
>PRK09389 (R)-citramalate synthase; Provisional
Probab=87.12 E-value=9.4 Score=39.67 Aligned_cols=105 Identities=11% Similarity=0.047 Sum_probs=77.2
Q ss_pred HHHHHHHHHCCCCEEEEccCccCcC-----CCCHHHHHHHHHHHHHhhCC-CcEEEEec---CCCCHHHHHHHHHHHHhC
Q 018253 82 DDLVNMQIVNGAEGMIVGGTTGEGQ-----LMSWDEHIMLIGHTVNCFGA-SVKVIGNT---GSNSTREAIHATEQGFAV 152 (359)
Q Consensus 82 ~~li~~li~~Gv~Gl~v~GstGE~~-----~LT~~Er~~li~~~v~~~~g-rvpViagv---g~~st~~ai~la~~a~~~ 152 (359)
.+-++..+++|++.+-+..++++.+ .+|.+|-.+.+..+++.+.. ...|.++. +..+.+-.++.++.+.++
T Consensus 76 ~~di~~a~~~g~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~~g~~v~~~~ed~~r~~~~~l~~~~~~~~~~ 155 (488)
T PRK09389 76 KVDIDAALECDVDSVHLVVPTSDLHIEYKLKKTREEVLETAVEAVEYAKDHGLIVELSGEDASRADLDFLKELYKAGIEA 155 (488)
T ss_pred HHHHHHHHhCCcCEEEEEEccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCEEEEEEeeCCCCCHHHHHHHHHHHHhC
Confidence 4447788889999999999999884 67888888877777776542 23444433 334577788999999999
Q ss_pred CCCEEEEcCCCCCCCCHHHHHHHHHHHHhc--CCeEE
Q 018253 153 GMHAALHINPYYGKTSLEGLISHFDSVLSM--GPTII 187 (359)
Q Consensus 153 Gadav~v~pP~y~~~s~~~l~~yf~~Ia~a--~Piii 187 (359)
|+|.+.+ +=.....+++++.+.++.+.+. .|+-+
T Consensus 156 Ga~~i~l-~DTvG~~~P~~~~~lv~~l~~~~~v~l~~ 191 (488)
T PRK09389 156 GADRICF-CDTVGILTPEKTYELFKRLSELVKGPVSI 191 (488)
T ss_pred CCCEEEE-ecCCCCcCHHHHHHHHHHHHhhcCCeEEE
Confidence 9998655 3445566788999999998776 45544
No 249
>PLN02321 2-isopropylmalate synthase
Probab=87.03 E-value=4 Score=43.73 Aligned_cols=103 Identities=22% Similarity=0.123 Sum_probs=79.4
Q ss_pred CCCCCHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEec-CCCCHHHHHHHHHHHHh
Q 018253 73 DGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNT-GSNSTREAIHATEQGFA 151 (359)
Q Consensus 73 dg~ID~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagv-g~~st~~ai~la~~a~~ 151 (359)
.++.|.+-+.++++.+++.|++-|.++-|+|= ++++|-.++++.+.+.+++.-++.+++ .+++..-++.-+-.|.+
T Consensus 234 a~rtd~d~l~~~~~~a~~aGa~~I~L~DTvG~---~~P~~v~~li~~l~~~~~~~~~v~i~vH~HND~GlAvANslaAv~ 310 (632)
T PLN02321 234 AGRSDPEFLYRILGEVIKAGATTLNIPDTVGY---TLPSEFGQLIADIKANTPGIENVIISTHCQNDLGLSTANTLAGAH 310 (632)
T ss_pred CCCCCHHHHHHHHHHHHHcCCCEEEecccccC---CCHHHHHHHHHHHHHhcCCCCCceEEEEeCCCCCHHHHHHHHHHH
Confidence 57799999999999999999999999999984 689999999999998876532343343 46788889999999999
Q ss_pred CCCCEEEEcCCCCC----CCCHHHHHHHHHH
Q 018253 152 VGMHAALHINPYYG----KTSLEGLISHFDS 178 (359)
Q Consensus 152 ~Gadav~v~pP~y~----~~s~~~l~~yf~~ 178 (359)
+||+.+-..-==+. ..+-++++..++.
T Consensus 311 AGA~~Vd~TinGlGERaGNa~LEevv~~L~~ 341 (632)
T PLN02321 311 AGARQVEVTINGIGERAGNASLEEVVMAIKC 341 (632)
T ss_pred hCCCEEEEecccccccccCccHHHHHHHHHh
Confidence 99999866533222 2345565555543
No 250
>PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism. 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde The family also includes a group of related bacterial proteins of unknown function, see examples Q57843 from SWISSPROT and P76143 from SWISSPROT.; GO: 0016829 lyase activity; PDB: 2A4A_A 1VCV_B 1P1X_A 1KTN_B 1JCL_A 1JCJ_A 1MZH_A 3GKF_D 3GLC_L 3GND_N ....
Probab=86.99 E-value=13 Score=34.32 Aligned_cols=118 Identities=18% Similarity=0.025 Sum_probs=75.3
Q ss_pred EeeecCCCCCCCCCHHHH-----HHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhh-CCCcEEEEecCCC
Q 018253 64 TAIKTPYLPDGRFDLEAY-----DDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCF-GASVKVIGNTGSN 137 (359)
Q Consensus 64 ~al~TPF~~dg~ID~~~l-----~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~-~grvpViagvg~~ 137 (359)
++++.=| +.|.-..+.- ..-++..++.|++.+-+.-..|-.-+=..++..+.++.+++.+ +..+|||+= +-.
T Consensus 57 ~~~vi~f-p~g~~~~~~k~~~~~~~~ve~A~~~GAd~vd~vi~~~~~~~~~~~~~~~~i~~v~~~~~~~gl~vIlE-~~l 134 (236)
T PF01791_consen 57 VGLVIGF-PFGTSTTEPKGYDQIVAEVEEAIRLGADEVDVVINYGALGSGNEDEVIEEIAAVVEECHKYGLKVILE-PYL 134 (236)
T ss_dssp EEEEEST-TTSSSTHHHHTCEEEHHHHHHHHHTT-SEEEEEEEHHHHHTTHHHHHHHHHHHHHHHHHTSEEEEEEE-ECE
T ss_pred cceEEEe-CCCCCccccccccchHHHHHHHHHcCCceeeeeccccccccccHHHHHHHHHHHHHHHhcCCcEEEEE-Eec
Confidence 3334444 2455555555 7888999999999987777663222222566666666666655 457899887 444
Q ss_pred CHHH---------HHHHHHHHHhCCCCEEEEcCCCCCCCCHHHHHHHHHHHHhc--CC
Q 018253 138 STRE---------AIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSM--GP 184 (359)
Q Consensus 138 st~~---------ai~la~~a~~~Gadav~v~pP~y~~~s~~~l~~yf~~Ia~a--~P 184 (359)
...+ ....+|.+.++|||.+=...|.. .....+-.+-|+++.+. .|
T Consensus 135 ~~~~~~~~~~~~~I~~a~ria~e~GaD~vKt~tg~~-~~~t~~~~~~~~~~~~~~~~p 191 (236)
T PF01791_consen 135 RGEEVADEKKPDLIARAARIAAELGADFVKTSTGKP-VGATPEDVELMRKAVEAAPVP 191 (236)
T ss_dssp CHHHBSSTTHHHHHHHHHHHHHHTT-SEEEEE-SSS-SCSHHHHHHHHHHHHHTHSST
T ss_pred CchhhcccccHHHHHHHHHHHHHhCCCEEEecCCcc-ccccHHHHHHHHHHHHhcCCC
Confidence 4444 58888899999999999988855 44444445566666664 45
No 251
>PLN02489 homocysteine S-methyltransferase
Probab=86.99 E-value=23 Score=34.90 Aligned_cols=102 Identities=14% Similarity=0.059 Sum_probs=66.0
Q ss_pred CCHHHHHHH----HHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCC---------CCHHHH
Q 018253 76 FDLEAYDDL----VNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGS---------NSTREA 142 (359)
Q Consensus 76 ID~~~l~~l----i~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~---------~st~~a 142 (359)
++.+.+... ++.+++.|||.|++ -| .-+.+|-+.+++.+.+ ...++|+++.+.- .+..++
T Consensus 160 ~~~~e~~~~~~~qi~~l~~~gvD~i~~-ET-----~~~l~E~~a~~~~~~~-~~~~~p~~iS~t~~~~~~l~~G~~~~~~ 232 (335)
T PLN02489 160 VTLEKLKDFHRRRLQVLAEAGPDLIAF-ET-----IPNKLEAQAYVELLEE-ENIKIPAWISFNSKDGVNVVSGDSLLEC 232 (335)
T ss_pred CCHHHHHHHHHHHHHHHHhCCCCEEEE-ec-----cCChHHHHHHHHHHHH-cCCCCeEEEEEEeCCCCccCCCCcHHHH
Confidence 666665554 77777899998774 33 2357777777776654 3446898887632 345566
Q ss_pred HHHHHHHHhCCCCEEEEcCCCCCCCCHHHHHHHHHHHHhc--CCeEEEeCC
Q 018253 143 IHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSM--GPTIIYNVP 191 (359)
Q Consensus 143 i~la~~a~~~Gadav~v~pP~y~~~s~~~l~~yf~~Ia~a--~PiiiYn~P 191 (359)
++.+.. ..+++++.+=- .+++.+..-.+.+... .|+++|-+.
T Consensus 233 ~~~~~~--~~~~~~iGiNC-----~~p~~~~~~l~~l~~~~~~pl~vyPNa 276 (335)
T PLN02489 233 ASIADS--CKKVVAVGINC-----TPPRFIHGLILSIRKVTSKPIVVYPNS 276 (335)
T ss_pred HHHHHh--cCCceEEEecC-----CCHHHHHHHHHHHHhhcCCcEEEECCC
Confidence 666532 23566666542 2456777777777664 699999774
No 252
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=86.93 E-value=5.8 Score=36.14 Aligned_cols=79 Identities=9% Similarity=0.044 Sum_probs=48.4
Q ss_pred HHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCCCHHHHHHHHHHHHhCCCCEEEEcCCCC
Q 018253 85 VNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYY 164 (359)
Q Consensus 85 i~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~st~~ai~la~~a~~~Gadav~v~pP~y 164 (359)
++...+.|++.+.+.+..+....... +.++.+.+....++||+++-|-.+.++..++ .++|||++++..-.|
T Consensus 134 ~~~~~~~g~~~i~~t~~~~~~~~~~~----~~~~~l~~~~~~~~pvia~gGI~s~edi~~~----~~~Ga~gvivGsai~ 205 (217)
T cd00331 134 LERALALGAKIIGINNRDLKTFEVDL----NTTERLAPLIPKDVILVSESGISTPEDVKRL----AEAGADAVLIGESLM 205 (217)
T ss_pred HHHHHHcCCCEEEEeCCCccccCcCH----HHHHHHHHhCCCCCEEEEEcCCCCHHHHHHH----HHcCCCEEEECHHHc
Confidence 34455667777766654443332222 4445555555456899987776555665544 446999999988777
Q ss_pred CCCCHHH
Q 018253 165 GKTSLEG 171 (359)
Q Consensus 165 ~~~s~~~ 171 (359)
...++.+
T Consensus 206 ~~~~p~~ 212 (217)
T cd00331 206 RAPDPGA 212 (217)
T ss_pred CCCCHHH
Confidence 6655433
No 253
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=86.88 E-value=29 Score=32.98 Aligned_cols=137 Identities=10% Similarity=0.093 Sum_probs=80.8
Q ss_pred CCCCHHHHHHHHHHHHHCCCCEEEEc---cCccCc---CCCCHHHHHHHHHHHHHhhCCCcEEEEecCCCCHHHHHHHHH
Q 018253 74 GRFDLEAYDDLVNMQIVNGAEGMIVG---GTTGEG---QLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATE 147 (359)
Q Consensus 74 g~ID~~~l~~li~~li~~Gv~Gl~v~---GstGE~---~~LT~~Er~~li~~~v~~~~grvpViagvg~~st~~ai~la~ 147 (359)
-.++.+...++++.|.+.||+-|=++ ++..|+ ..++.+| .++.+.+...++.++.+-+-... ..++..+
T Consensus 15 ~~f~~~~~~~ia~~L~~~GVd~IEvG~~~~~~~~~~~~~~~~~~~---~~~~i~~~~~~~~~~~~~~~~~~--~~~~~l~ 89 (266)
T cd07944 15 WDFGDEFVKAIYRALAAAGIDYVEIGYRSSPEKEFKGKSAFCDDE---FLRRLLGDSKGNTKIAVMVDYGN--DDIDLLE 89 (266)
T ss_pred ccCCHHHHHHHHHHHHHCCCCEEEeecCCCCccccCCCccCCCHH---HHHHHHhhhccCCEEEEEECCCC--CCHHHHH
Confidence 35888999999999999999988554 322222 2233322 33333343323456655443322 2355677
Q ss_pred HHHhCCCCEEEEcCCCCCCCCHHHHHHHHHHHHhc-CCeEEEeCCCCCCCCCCHHHHHHHh----cC-CCeEEEeccCch
Q 018253 148 QGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSM-GPTIIYNVPSRTGQDIPPRVIHTMA----QS-PNLAGVKECVGN 221 (359)
Q Consensus 148 ~a~~~Gadav~v~pP~y~~~s~~~l~~yf~~Ia~a-~PiiiYn~P~~tg~~ls~e~l~~La----~~-pnivGiK~ss~d 221 (359)
.+.+.|+|.+-+..|. ...+.+.+..+.+-+. ..+. .+.-..++ .+++.+.+++ +. +..+.++|+.|-
T Consensus 90 ~a~~~gv~~iri~~~~---~~~~~~~~~i~~ak~~G~~v~-~~~~~a~~--~~~~~~~~~~~~~~~~g~~~i~l~DT~G~ 163 (266)
T cd07944 90 PASGSVVDMIRVAFHK---HEFDEALPLIKAIKEKGYEVF-FNLMAISG--YSDEELLELLELVNEIKPDVFYIVDSFGS 163 (266)
T ss_pred HHhcCCcCEEEEeccc---ccHHHHHHHHHHHHHCCCeEE-EEEEeecC--CCHHHHHHHHHHHHhCCCCEEEEecCCCC
Confidence 7888999988775433 2456666666666554 3333 33222223 5666666554 33 578889999986
No 254
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=86.81 E-value=4.4 Score=36.37 Aligned_cols=76 Identities=12% Similarity=0.114 Sum_probs=43.9
Q ss_pred CCCCEEEE----ccCccCcCCCCHHHHHHHHHHHHHhh---CCCcEEEEecCCCCHHHHHHHHHHHHhCCCCEEEEcCCC
Q 018253 91 NGAEGMIV----GGTTGEGQLMSWDEHIMLIGHTVNCF---GASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPY 163 (359)
Q Consensus 91 ~Gv~Gl~v----~GstGE~~~LT~~Er~~li~~~v~~~---~grvpViagvg~~st~~ai~la~~a~~~Gadav~v~pP~ 163 (359)
.+++.+++ .|.||+.+ .++.. +.++.+.+.. +..+|++++= +-+. +.++.+.+.|+|++.+...+
T Consensus 125 ~~~d~i~~~~~~~g~tg~~~--~~~~~-~~i~~i~~~~~~~~~~~~i~v~G-GI~~----env~~l~~~gad~iivgsai 196 (210)
T TIGR01163 125 PDVDLVLLMSVNPGFGGQKF--IPDTL-EKIREVRKMIDENGLSILIEVDG-GVND----DNARELAEAGADILVAGSAI 196 (210)
T ss_pred hhCCEEEEEEEcCCCCcccc--cHHHH-HHHHHHHHHHHhcCCCceEEEEC-CcCH----HHHHHHHHcCCCEEEEChHH
Confidence 46787766 47788633 33222 2333333333 2346775532 3343 33555567999999999998
Q ss_pred CCCCCHHHHHH
Q 018253 164 YGKTSLEGLIS 174 (359)
Q Consensus 164 y~~~s~~~l~~ 174 (359)
|...+.++..+
T Consensus 197 ~~~~d~~~~~~ 207 (210)
T TIGR01163 197 FGADDYKEVIR 207 (210)
T ss_pred hCCCCHHHHHH
Confidence 87666555443
No 255
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=86.62 E-value=6.3 Score=39.12 Aligned_cols=84 Identities=10% Similarity=0.038 Sum_probs=70.5
Q ss_pred CCCCCHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCCCHHHHHHHHHHHHhC
Q 018253 73 DGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAV 152 (359)
Q Consensus 73 dg~ID~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~st~~ai~la~~a~~~ 152 (359)
+++.|.+-+.++++.+.+.|++-|.+.-|+|- +++.+-.++++.+.+.++ ..|+-++ .+++..-++..+-.|.++
T Consensus 191 ~~r~~~~~l~~~~~~~~~~Gad~I~l~DT~G~---a~P~~v~~lv~~l~~~~~-~~~i~~H-~Hnd~GlA~AN~lAA~~a 265 (347)
T PLN02746 191 EGPVPPSKVAYVAKELYDMGCYEISLGDTIGV---GTPGTVVPMLEAVMAVVP-VDKLAVH-FHDTYGQALANILVSLQM 265 (347)
T ss_pred cCCCCHHHHHHHHHHHHHcCCCEEEecCCcCC---cCHHHHHHHHHHHHHhCC-CCeEEEE-ECCCCChHHHHHHHHHHh
Confidence 57799999999999999999999999999996 578888899988887763 3455444 467888899999999999
Q ss_pred CCCEEEEcC
Q 018253 153 GMHAALHIN 161 (359)
Q Consensus 153 Gadav~v~p 161 (359)
||+.+=..-
T Consensus 266 Ga~~vd~sv 274 (347)
T PLN02746 266 GISTVDSSV 274 (347)
T ss_pred CCCEEEEec
Confidence 999886554
No 256
>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.
Probab=86.59 E-value=8.2 Score=33.31 Aligned_cols=108 Identities=12% Similarity=0.069 Sum_probs=68.7
Q ss_pred HHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCCCHHHHHH-HHHHHHhCCCCEE
Q 018253 79 EAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIH-ATEQGFAVGMHAA 157 (359)
Q Consensus 79 ~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~st~~ai~-la~~a~~~Gadav 157 (359)
+...+.++.+.+.|++.+.+..............+ ++++...+.. .+|+++++..++..+.+. .++.+.++|+|++
T Consensus 12 ~~~~~~~~~~~~~G~~~v~~~~~~~~~~~~~~~~~-~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~a~~~~~~g~d~v 88 (200)
T cd04722 12 GDPVELAKAAAEAGADAIIVGTRSSDPEEAETDDK-EVLKEVAAET--DLPLGVQLAINDAAAAVDIAAAAARAAGADGV 88 (200)
T ss_pred HHHHHHHHHHHcCCCCEEEEeeEEECcccCCCccc-cHHHHHHhhc--CCcEEEEEccCCchhhhhHHHHHHHHcCCCEE
Confidence 66778888888899988776655554443332221 2333434333 579999988776666554 3688899999999
Q ss_pred EEcCCCCCCCCHHHHHHHHHHHHhc---CCeEEEeCC
Q 018253 158 LHINPYYGKTSLEGLISHFDSVLSM---GPTIIYNVP 191 (359)
Q Consensus 158 ~v~pP~y~~~s~~~l~~yf~~Ia~a---~PiiiYn~P 191 (359)
.+.....+ ..+...++.+.+.+. .|+++.-.+
T Consensus 89 ~l~~~~~~--~~~~~~~~~~~i~~~~~~~~v~~~~~~ 123 (200)
T cd04722 89 EIHGAVGY--LAREDLELIRELREAVPDVKVVVKLSP 123 (200)
T ss_pred EEeccCCc--HHHHHHHHHHHHHHhcCCceEEEEECC
Confidence 87644321 145666777777664 466665443
No 257
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=86.50 E-value=3.1 Score=40.61 Aligned_cols=81 Identities=19% Similarity=0.132 Sum_probs=53.6
Q ss_pred HHHHHHHHHHCCCCEEEEccCccC-cCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCCCHHHHHHHHHHHHhCCCCEEEE
Q 018253 81 YDDLVNMQIVNGAEGMIVGGTTGE-GQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALH 159 (359)
Q Consensus 81 l~~li~~li~~Gv~Gl~v~GstGE-~~~LT~~Er~~li~~~v~~~~grvpViagvg~~st~~ai~la~~a~~~Gadav~v 159 (359)
...+++.+.+.|++.|.+-|-|.+ +++-... .-+.++.+.+.+ ++|||+.=+=.+.+++.++. +.-|+|+||+
T Consensus 150 ~~~~a~~l~~~Gvd~i~Vh~Rt~~~~y~g~~~-~~~~i~~ik~~~--~iPVi~nGdI~t~~da~~~l---~~~g~DgVmi 223 (312)
T PRK10550 150 KFEIADAVQQAGATELVVHGRTKEDGYRAEHI-NWQAIGEIRQRL--TIPVIANGEIWDWQSAQQCM---AITGCDAVMI 223 (312)
T ss_pred HHHHHHHHHhcCCCEEEECCCCCccCCCCCcc-cHHHHHHHHhhc--CCcEEEeCCcCCHHHHHHHH---hccCCCEEEE
Confidence 578888888999999999665543 3332211 124555556655 58987643334666666655 3469999999
Q ss_pred cCCCCCCC
Q 018253 160 INPYYGKT 167 (359)
Q Consensus 160 ~pP~y~~~ 167 (359)
.-..+..|
T Consensus 224 GRg~l~nP 231 (312)
T PRK10550 224 GRGALNIP 231 (312)
T ss_pred cHHhHhCc
Confidence 88777665
No 258
>PRK01060 endonuclease IV; Provisional
Probab=86.49 E-value=29 Score=32.60 Aligned_cols=126 Identities=11% Similarity=0.043 Sum_probs=71.3
Q ss_pred HHHHHHHHHHCCCCEEEEccCc-cCc--CCCCHHHHHHHHHHHHHhhCCC---c----EEEEecCCCC-------HHHHH
Q 018253 81 YDDLVNMQIVNGAEGMIVGGTT-GEG--QLMSWDEHIMLIGHTVNCFGAS---V----KVIGNTGSNS-------TREAI 143 (359)
Q Consensus 81 l~~li~~li~~Gv~Gl~v~Gst-GE~--~~LT~~Er~~li~~~v~~~~gr---v----pViagvg~~s-------t~~ai 143 (359)
+.+.+++..+.|.+|+=+.... .++ ..+|.++..++-+.. +..+=+ + |.....++.. .+...
T Consensus 14 ~~~~l~~~~~~G~d~vEl~~~~p~~~~~~~~~~~~~~~lk~~~-~~~gl~~~~~~~h~~~~~nl~~~d~~~r~~s~~~~~ 92 (281)
T PRK01060 14 LEGAVAEAAEIGANAFMIFTGNPQQWKRKPLEELNIEAFKAAC-EKYGISPEDILVHAPYLINLGNPNKEILEKSRDFLI 92 (281)
T ss_pred HHHHHHHHHHcCCCEEEEECCCCCCCcCCCCCHHHHHHHHHHH-HHcCCCCCceEEecceEecCCCCCHHHHHHHHHHHH
Confidence 6778899999999998444322 222 256777766655444 333222 1 2223333332 33466
Q ss_pred HHHHHHHhCCCCEEEEcCCCCCC-CCHH----HHHHHHHHHHhc---CCeEEEeCCCCC-CCCCCHHHHHHHh
Q 018253 144 HATEQGFAVGMHAALHINPYYGK-TSLE----GLISHFDSVLSM---GPTIIYNVPSRT-GQDIPPRVIHTMA 207 (359)
Q Consensus 144 ~la~~a~~~Gadav~v~pP~y~~-~s~~----~l~~yf~~Ia~a---~PiiiYn~P~~t-g~~ls~e~l~~La 207 (359)
+.++.|.++|+..+.+.+..+.. ...+ .+.+.++.+.+. +.+.+=|.|... ...-+++.+.+|.
T Consensus 93 ~~i~~A~~lga~~vv~h~G~~~~~~~~~~~~~~~~e~l~~l~~~~~gv~l~iEn~~~~~~~~~~~~~~~~~l~ 165 (281)
T PRK01060 93 QEIERCAALGAKLLVFHPGSHLGDIDEEDCLARIAESLNEALDKTQGVTIVLENTAGQGSELGRRFEELARII 165 (281)
T ss_pred HHHHHHHHcCCCEEEEcCCcCCCCCcHHHHHHHHHHHHHHHHhcCCCCEEEEecCCCCCCcccCCHHHHHHHH
Confidence 66777889999988887765532 2233 233344444332 467777776421 1223577777776
No 259
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=86.45 E-value=6.1 Score=37.54 Aligned_cols=96 Identities=18% Similarity=0.085 Sum_probs=73.8
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCCCHHHHHHHHHHHHhCCCC
Q 018253 76 FDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMH 155 (359)
Q Consensus 76 ID~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~st~~ai~la~~a~~~Gad 155 (359)
-|.+.+.++++.+.+.|++.|.+.-|+| .+++++-.++++.+.+..+ +|+-++. +++..-++..+..|.++|++
T Consensus 138 ~~~~~l~~~~~~~~~~g~~~i~l~Dt~G---~~~P~~v~~~~~~~~~~~~--~~i~~H~-Hn~~Gla~an~~~a~~aG~~ 211 (262)
T cd07948 138 SDLVDLLRVYRAVDKLGVNRVGIADTVG---IATPRQVYELVRTLRGVVS--CDIEFHG-HNDTGCAIANAYAALEAGAT 211 (262)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEECCcCC---CCCHHHHHHHHHHHHHhcC--CeEEEEE-CCCCChHHHHHHHHHHhCCC
Confidence 4678899999999999999999999999 7899999999988887664 6765544 67788899999999999999
Q ss_pred EEEEcCCC----CCCCCHHHHHHHHH
Q 018253 156 AALHINPY----YGKTSLEGLISHFD 177 (359)
Q Consensus 156 av~v~pP~----y~~~s~~~l~~yf~ 177 (359)
.+=..-=- ....+-++++.+..
T Consensus 212 ~vd~s~~GlGeraGn~~~e~~~~~l~ 237 (262)
T cd07948 212 HIDTTVLGIGERNGITPLGGLIARMY 237 (262)
T ss_pred EEEEeccccccccCCccHHHHHHHHH
Confidence 76554321 22344566665553
No 260
>PF07302 AroM: AroM protein; InterPro: IPR010843 This family consists of several bacterial and archaeal AroM proteins. In Escherichia coli the aroM gene is cotranscribed with aroL []. The function of this family is unknown.
Probab=86.44 E-value=24 Score=32.80 Aligned_cols=140 Identities=14% Similarity=0.094 Sum_probs=89.8
Q ss_pred EeeecCCCCCCC---CCHHHHHH----HHHHHHHCCCCEEEEccCccCcCCCC----HHHHHHHHHHHHHhhCCCcEEEE
Q 018253 64 TAIKTPYLPDGR---FDLEAYDD----LVNMQIVNGAEGMIVGGTTGEGQLMS----WDEHIMLIGHTVNCFGASVKVIG 132 (359)
Q Consensus 64 ~al~TPF~~dg~---ID~~~l~~----li~~li~~Gv~Gl~v~GstGE~~~LT----~~Er~~li~~~v~~~~grvpVia 132 (359)
..++|=++ ||+ +..+.+.. .++.+-+.|++-++ +-.||||..|+ .=|=.+++..+++...+.- -+
T Consensus 53 ~vLvTrL~-DG~~V~ls~~~v~~~lq~~i~~le~~G~d~il-llCTG~F~~l~~~~~lleP~ril~~lV~al~~~~--~v 128 (221)
T PF07302_consen 53 YVLVTRLR-DGTQVVLSKKKVEPRLQACIAQLEAQGYDVIL-LLCTGEFPGLTARNPLLEPDRILPPLVAALVGGH--QV 128 (221)
T ss_pred ceeEEEeC-CCCEEEEEHHHHHHHHHHHHHHHHHCCCCEEE-EeccCCCCCCCCCcceeehHHhHHHHHHHhcCCC--eE
Confidence 45566554 553 56655554 44456679999766 55789999888 3355677777787765442 33
Q ss_pred ecCCCCHHHHHHHHHHHHhCCCCEEEE-cCCCCCCCCHHHHHHHHHHHHhc-CCeEEEeCCCCCCCCCCH-HHHHHHhcC
Q 018253 133 NTGSNSTREAIHATEQGFAVGMHAALH-INPYYGKTSLEGLISHFDSVLSM-GPTIIYNVPSRTGQDIPP-RVIHTMAQS 209 (359)
Q Consensus 133 gvg~~st~~ai~la~~a~~~Gadav~v-~pP~y~~~s~~~l~~yf~~Ia~a-~PiiiYn~P~~tg~~ls~-e~l~~La~~ 209 (359)
||-....++.-...+..+.++.+-... ..||. .+.+++.+--+++.+. ..+++-|. .|+.-.. +.+++....
T Consensus 129 GVivP~~eQ~~~~~~kW~~l~~~~~~a~asPy~--~~~~~l~~Aa~~L~~~gadlIvLDC---mGYt~~~r~~~~~~~g~ 203 (221)
T PF07302_consen 129 GVIVPLPEQIAQQAEKWQPLGNPVVVAAASPYE--GDEEELAAAARELAEQGADLIVLDC---MGYTQEMRDIVQRALGK 203 (221)
T ss_pred EEEecCHHHHHHHHHHHHhcCCCeEEEEeCCCC--CCHHHHHHHHHHHHhcCCCEEEEEC---CCCCHHHHHHHHHHhCC
Confidence 555555666666888888888765544 44554 4678888888888876 67888884 4544332 234444444
Q ss_pred CCe
Q 018253 210 PNL 212 (359)
Q Consensus 210 pni 212 (359)
|-+
T Consensus 204 PVl 206 (221)
T PF07302_consen 204 PVL 206 (221)
T ss_pred CEE
Confidence 433
No 261
>PLN02321 2-isopropylmalate synthase
Probab=86.43 E-value=28 Score=37.39 Aligned_cols=61 Identities=15% Similarity=0.098 Sum_probs=38.2
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCC------CcEEEEecCCCCHHH
Q 018253 75 RFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGA------SVKVIGNTGSNSTRE 141 (359)
Q Consensus 75 ~ID~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~g------rvpViagvg~~st~~ 141 (359)
.+..+.-.++++.|.+.|++-|=++ |+..|..|+.. ++.+.+.... -+++|++.+....++
T Consensus 104 ~~s~eeKl~Ia~~L~~lGVd~IEvG-----fP~~Sp~D~e~-vr~i~~~~~~~v~~~~~v~~i~a~~ra~~~d 170 (632)
T PLN02321 104 TLTSKEKLDIARQLAKLGVDIIEAG-----FPIASPDDLEA-VKTIAKEVGNEVDEDGYVPVICGLSRCNKKD 170 (632)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEe-----CcCCCccHHHH-HHHHHHhcccCCCccccceeeeeehhccHHh
Confidence 4899999999999999999988653 33455555544 4444443322 135566555544433
No 262
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=86.42 E-value=4.4 Score=37.35 Aligned_cols=75 Identities=16% Similarity=0.280 Sum_probs=50.4
Q ss_pred HHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCCCHHHHHHHHHHHHhCCCCEEEEcC
Q 018253 82 DDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHIN 161 (359)
Q Consensus 82 ~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~st~~ai~la~~a~~~Gadav~v~p 161 (359)
..+++.+.+.|++.+++.+-+.+...-.. ..++++.+.+.+ .+||+++=|-.+.++..+.. ++.|||++++..
T Consensus 156 ~~~~~~~~~~G~d~i~i~~i~~~g~~~g~--~~~~~~~i~~~~--~ipvia~GGi~s~~di~~~l---~~~gadgV~vg~ 228 (232)
T TIGR03572 156 VEWAREAEQLGAGEILLNSIDRDGTMKGY--DLELIKTVSDAV--SIPVIALGGAGSLDDLVEVA---LEAGASAVAAAS 228 (232)
T ss_pred HHHHHHHHHcCCCEEEEeCCCccCCcCCC--CHHHHHHHHhhC--CCCEEEECCCCCHHHHHHHH---HHcCCCEEEEeh
Confidence 46777788999999999985554332111 255666666655 58999876666666665533 446999999875
Q ss_pred CC
Q 018253 162 PY 163 (359)
Q Consensus 162 P~ 163 (359)
-+
T Consensus 229 a~ 230 (232)
T TIGR03572 229 LF 230 (232)
T ss_pred hh
Confidence 43
No 263
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=86.35 E-value=5.7 Score=36.61 Aligned_cols=103 Identities=16% Similarity=0.130 Sum_probs=55.5
Q ss_pred HHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCC------------------CCHHHHHHHHHHH
Q 018253 88 QIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGS------------------NSTREAIHATEQG 149 (359)
Q Consensus 88 li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~------------------~st~~ai~la~~a 149 (359)
+.+.|++++.++..+ + +..++++.+++..+.+. +++.+-. .+..+.+++++.+
T Consensus 92 ~~~~G~~~vilg~~~-----l---~~~~~~~~~~~~~~~~~-i~vsld~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 162 (232)
T TIGR03572 92 LLSLGADKVSINTAA-----L---ENPDLIEEAARRFGSQC-VVVSIDVKKELDGSDYKVYSDNGRRATGRDPVEWAREA 162 (232)
T ss_pred HHHcCCCEEEEChhH-----h---cCHHHHHHHHHHcCCce-EEEEEEeccCCCCCcEEEEECCCcccCCCCHHHHHHHH
Confidence 456799988665222 1 22345555566554431 3333221 1234568999999
Q ss_pred HhCCCCEEEEcCCCCCCCCHHHHHHHHHHHHhc--CCeEEEeCCCCCCCCCCHHHHHH
Q 018253 150 FAVGMHAALHINPYYGKTSLEGLISHFDSVLSM--GPTIIYNVPSRTGQDIPPRVIHT 205 (359)
Q Consensus 150 ~~~Gadav~v~pP~y~~~s~~~l~~yf~~Ia~a--~PiiiYn~P~~tg~~ls~e~l~~ 205 (359)
++.|+|.+.+..-.-....+.--.++++++.+. .|++.- -|+ -+++.+.+
T Consensus 163 ~~~G~d~i~i~~i~~~g~~~g~~~~~~~~i~~~~~ipvia~-----GGi-~s~~di~~ 214 (232)
T TIGR03572 163 EQLGAGEILLNSIDRDGTMKGYDLELIKTVSDAVSIPVIAL-----GGA-GSLDDLVE 214 (232)
T ss_pred HHcCCCEEEEeCCCccCCcCCCCHHHHHHHHhhCCCCEEEE-----CCC-CCHHHHHH
Confidence 999999998886211100000125556666654 465433 232 36777777
No 264
>PRK10605 N-ethylmaleimide reductase; Provisional
Probab=86.33 E-value=15 Score=36.66 Aligned_cols=131 Identities=17% Similarity=0.074 Sum_probs=81.0
Q ss_pred CCCHHHHHHHHHHH-------HHCCCCEEEEccCccC----cCC-----------CCHHHHHHHHHHHHHhh----CCCc
Q 018253 75 RFDLEAYDDLVNMQ-------IVNGAEGMIVGGTTGE----GQL-----------MSWDEHIMLIGHTVNCF----GASV 128 (359)
Q Consensus 75 ~ID~~~l~~li~~l-------i~~Gv~Gl~v~GstGE----~~~-----------LT~~Er~~li~~~v~~~----~grv 128 (359)
.++.+.++++++.. .++|.|||-+-|..|- |.+ =|.|-|.+++..+++.+ +.+
T Consensus 148 ~mt~~eI~~ii~~f~~AA~rA~~AGfDGVEIh~ahGyLl~qFLSp~~N~RtDeYGGslENR~Rf~~Eiv~aVr~~vg~~- 226 (362)
T PRK10605 148 ALELEEIPGIVNDFRQAIANAREAGFDLVELHSAHGYLLHQFLSPSSNQRTDQYGGSVENRARLVLEVVDAGIAEWGAD- 226 (362)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEcccccchHHHhcCCcCCCCCCcCCCcHHHHHHHHHHHHHHHHHHcCCC-
Confidence 46667766666644 4699999999887753 222 25677887776666654 333
Q ss_pred EEEEec----------CCCCHHH-HHHHHHHHHhCCCCEEEEcCCCCCCCCHHHH-HHHHHHHHhc--CCeEEEeCCCCC
Q 018253 129 KVIGNT----------GSNSTRE-AIHATEQGFAVGMHAALHINPYYGKTSLEGL-ISHFDSVLSM--GPTIIYNVPSRT 194 (359)
Q Consensus 129 pViagv----------g~~st~~-ai~la~~a~~~Gadav~v~pP~y~~~s~~~l-~~yf~~Ia~a--~PiiiYn~P~~t 194 (359)
.|.+=+ ++.+.+| ++++++..++.|+|.+-+.-|.+... ... ..+.+.|-+. .||+.-
T Consensus 227 ~igvRis~~~~~~~~~~G~~~~e~~~~~~~~L~~~giD~i~vs~~~~~~~--~~~~~~~~~~ik~~~~~pv~~~------ 298 (362)
T PRK10605 227 RIGIRISPLGTFNNVDNGPNEEADALYLIEQLGKRGIAYLHMSEPDWAGG--EPYSDAFREKVRARFHGVIIGA------ 298 (362)
T ss_pred eEEEEECCccccccCCCCCCHHHHHHHHHHHHHHcCCCEEEeccccccCC--ccccHHHHHHHHHHCCCCEEEe------
Confidence 233211 2357788 89999999999999998887644211 111 2233444444 355532
Q ss_pred CCCCCHHHHHHHhcC--CCeEEE
Q 018253 195 GQDIPPRVIHTMAQS--PNLAGV 215 (359)
Q Consensus 195 g~~ls~e~l~~La~~--pnivGi 215 (359)
|. ++++..+++.+. -.+|++
T Consensus 299 G~-~~~~~ae~~i~~G~~D~V~~ 320 (362)
T PRK10605 299 GA-YTAEKAETLIGKGLIDAVAF 320 (362)
T ss_pred CC-CCHHHHHHHHHcCCCCEEEE
Confidence 33 578888887643 355555
No 265
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=86.03 E-value=9 Score=40.83 Aligned_cols=98 Identities=12% Similarity=0.079 Sum_probs=76.4
Q ss_pred cCCceEEeeecCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCC
Q 018253 58 KALRLITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSN 137 (359)
Q Consensus 58 ~~~Gi~~al~TPF~~dg~ID~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~ 137 (359)
+-.|..+-..--|+-+-..+.+-+.++++.+.+.|++-|.+.-++| .|++++-.++++.+.+..+ +||=++. ++
T Consensus 133 k~~G~~~~~~i~yt~sp~~t~e~~~~~ak~l~~~Gad~I~IkDtaG---~l~P~~v~~lv~alk~~~~--ipi~~H~-Hn 206 (596)
T PRK14042 133 KSHKKHAQGAICYTTSPVHTLDNFLELGKKLAEMGCDSIAIKDMAG---LLTPTVTVELYAGLKQATG--LPVHLHS-HS 206 (596)
T ss_pred HHcCCEEEEEEEecCCCCCCHHHHHHHHHHHHHcCCCEEEeCCccc---CCCHHHHHHHHHHHHhhcC--CEEEEEe-CC
Confidence 4455444443334445578999999999999999999999999999 4799999999999888763 7877665 45
Q ss_pred CHHHHHHHHHHHHhCCCCEEEEcC
Q 018253 138 STREAIHATEQGFAVGMHAALHIN 161 (359)
Q Consensus 138 st~~ai~la~~a~~~Gadav~v~p 161 (359)
+.--++..+-.|.++|||.+=..-
T Consensus 207 t~Gla~an~laAieaGad~iD~ai 230 (596)
T PRK14042 207 TSGLASICHYEAVLAGCNHIDTAI 230 (596)
T ss_pred CCCcHHHHHHHHHHhCCCEEEecc
Confidence 677788888889999999885443
No 266
>PLN02424 ketopantoate hydroxymethyltransferase
Probab=86.02 E-value=6.2 Score=38.82 Aligned_cols=75 Identities=15% Similarity=0.146 Sum_probs=57.8
Q ss_pred HHHHHHhCCCCEEEEcCCC---------CCCCCHHHHHHHHHHHHhc--CCeEEEeCCCCCCCCCCHHHH----HHHhcC
Q 018253 145 ATEQGFAVGMHAALHINPY---------YGKTSLEGLISHFDSVLSM--GPTIIYNVPSRTGQDIPPRVI----HTMAQS 209 (359)
Q Consensus 145 la~~a~~~Gadav~v~pP~---------y~~~s~~~l~~yf~~Ia~a--~PiiiYn~P~~tg~~ls~e~l----~~La~~ 209 (359)
.|+.+.++|+|.+++..-. -...+-++++.|.+.|.+. .|+++=|.|.. .+..+++.. .+|.+-
T Consensus 47 sA~i~d~aGvD~ILVGDSlgmv~lG~~~T~~Vtld~mi~H~~aV~Rga~~a~vVaDmPfg-SY~~s~e~av~nA~rl~~e 125 (332)
T PLN02424 47 SAVHVDSAGIDVCLVGDSAAMVVHGHDTTLPITLDEMLVHCRAVARGANRPLLVGDLPFG-SYESSTDQAVESAVRMLKE 125 (332)
T ss_pred HHHHHHHcCCCEEEECCcHHHHhcCCCCCCCcCHHHHHHHHHHHhccCCCCEEEeCCCCC-CCCCCHHHHHHHHHHHHHH
Confidence 4677788999999987652 1235789999999999987 69999999953 356677664 455455
Q ss_pred CCeEEEeccCc
Q 018253 210 PNLAGVKECVG 220 (359)
Q Consensus 210 pnivGiK~ss~ 220 (359)
-...|||.+.+
T Consensus 126 aGa~aVKlEGg 136 (332)
T PLN02424 126 GGMDAVKLEGG 136 (332)
T ss_pred hCCcEEEECCC
Confidence 68999999988
No 267
>COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism]
Probab=85.93 E-value=5.2 Score=37.46 Aligned_cols=86 Identities=19% Similarity=0.214 Sum_probs=59.3
Q ss_pred HHHHHHHCCCCEEEEccC-ccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCCCHHHHHHHHHHHHhCCCCEEEEcCC
Q 018253 84 LVNMQIVNGAEGMIVGGT-TGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINP 162 (359)
Q Consensus 84 li~~li~~Gv~Gl~v~Gs-tGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~st~~ai~la~~a~~~Gadav~v~pP 162 (359)
+.++|.+.|+..+..+|+ .|-+.-+...+-.+++ ++.+ ++|||+-.|=.+..++ -.|.++|+|+|++-..
T Consensus 143 ~arrLee~GcaavMPl~aPIGSg~G~~n~~~l~ii---ie~a--~VPviVDAGiG~pSdA----a~aMElG~DaVL~NTA 213 (262)
T COG2022 143 LARRLEEAGCAAVMPLGAPIGSGLGLQNPYNLEII---IEEA--DVPVIVDAGIGTPSDA----AQAMELGADAVLLNTA 213 (262)
T ss_pred HHHHHHhcCceEeccccccccCCcCcCCHHHHHHH---HHhC--CCCEEEeCCCCChhHH----HHHHhcccceeehhhH
Confidence 567888999999999884 5666666666655544 5555 8999985444445444 4567899999999877
Q ss_pred CCCCCCHHHHHHHHHH
Q 018253 163 YYGKTSLEGLISHFDS 178 (359)
Q Consensus 163 ~y~~~s~~~l~~yf~~ 178 (359)
.-...++-.+-+-|+.
T Consensus 214 iA~A~DPv~MA~Af~~ 229 (262)
T COG2022 214 IARAKDPVAMARAFAL 229 (262)
T ss_pred hhccCChHHHHHHHHH
Confidence 6655555555544443
No 268
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=85.87 E-value=12 Score=38.33 Aligned_cols=141 Identities=11% Similarity=0.110 Sum_probs=78.8
Q ss_pred HHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCCCHHHHHHHHHHHHhCCCCEEEEcC-
Q 018253 83 DLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHIN- 161 (359)
Q Consensus 83 ~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~st~~ai~la~~a~~~Gadav~v~p- 161 (359)
+.++.++++|++.|.+-.+.|.. +-..+.++...+.. .++||++|-.. +. +.++++.++|||++-+..
T Consensus 227 ~r~~~L~~aG~d~I~vd~a~g~~-----~~~~~~i~~i~~~~-~~~~vi~G~v~-t~----~~a~~l~~aGad~i~vg~g 295 (450)
T TIGR01302 227 ERAEALVKAGVDVIVIDSSHGHS-----IYVIDSIKEIKKTY-PDLDIIAGNVA-TA----EQAKALIDAGADGLRVGIG 295 (450)
T ss_pred HHHHHHHHhCCCEEEEECCCCcH-----hHHHHHHHHHHHhC-CCCCEEEEeCC-CH----HHHHHHHHhCCCEEEECCC
Confidence 44557899999999998887732 23445565555544 36899996553 33 445566679999997652
Q ss_pred CCCCCC---------CHHHHHHHHHHHHhc--CCeEEEeCCCCCCCCCCHHHHHHHhc--CCCeEEEeccCchh---hHh
Q 018253 162 PYYGKT---------SLEGLISHFDSVLSM--GPTIIYNVPSRTGQDIPPRVIHTMAQ--SPNLAGVKECVGND---RVE 225 (359)
Q Consensus 162 P~y~~~---------s~~~l~~yf~~Ia~a--~PiiiYn~P~~tg~~ls~e~l~~La~--~pnivGiK~ss~d~---~l~ 225 (359)
|-+... .+-..+....+.++. .|||- --|+.-+-+..+.|+- .--.+|=-.+..++ .+.
T Consensus 296 ~G~~~~t~~~~~~g~p~~~~i~~~~~~~~~~~vpvia-----dGGi~~~~di~kAla~GA~~V~~G~~~a~~~e~pg~~~ 370 (450)
T TIGR01302 296 PGSICTTRIVAGVGVPQITAVYDVAEYAAQSGIPVIA-----DGGIRYSGDIVKALAAGADAVMLGSLLAGTTESPGEYE 370 (450)
T ss_pred CCcCCccceecCCCccHHHHHHHHHHHHhhcCCeEEE-----eCCCCCHHHHHHHHHcCCCEEEECchhhcCCcCCCceE
Confidence 432111 233334444444443 46443 2466666777777773 22233333322221 111
Q ss_pred hhhCCceEEEecCC
Q 018253 226 HYTGNGIVVWSGND 239 (359)
Q Consensus 226 ~~~~~~~~v~~G~d 239 (359)
.+-+..+..|-|..
T Consensus 371 ~~~g~~~k~yrgm~ 384 (450)
T TIGR01302 371 IINGRRYKQYRGMG 384 (450)
T ss_pred EECCEEEEEEeccc
Confidence 12345667777764
No 269
>cd04747 OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 5. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=85.83 E-value=8.2 Score=38.49 Aligned_cols=88 Identities=14% Similarity=0.104 Sum_probs=59.3
Q ss_pred CCCHHHHHHHHHH-------HHHCCCCEEEEccCcc----CcC-----------CCCHHHHHHHHHHHHHh----hCCCc
Q 018253 75 RFDLEAYDDLVNM-------QIVNGAEGMIVGGTTG----EGQ-----------LMSWDEHIMLIGHTVNC----FGASV 128 (359)
Q Consensus 75 ~ID~~~l~~li~~-------li~~Gv~Gl~v~GstG----E~~-----------~LT~~Er~~li~~~v~~----~~grv 128 (359)
.++.+.++.+++. ..++|.|||-+.+..| +|. -=|.+-|.+++..+++. ++.+.
T Consensus 133 ~mt~~eI~~ii~~f~~AA~~a~~aGfDgVeih~ahGyLl~qFLSp~~N~RtDeYGGslenR~Rf~~eii~air~~vG~d~ 212 (361)
T cd04747 133 EMTEADIDDVIAAFARAAADARRLGFDGIELHGAHGYLIDQFFWAGTNRRADGYGGSLAARSRFAAEVVKAIRAAVGPDF 212 (361)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEecccchHHHHhcCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHcCCCC
Confidence 3556666555554 4568999998887764 111 11567777766666654 44456
Q ss_pred EEEEecC-----------CCCHHHHHHHHHHHHhCCCCEEEEcCC
Q 018253 129 KVIGNTG-----------SNSTREAIHATEQGFAVGMHAALHINP 162 (359)
Q Consensus 129 pViagvg-----------~~st~~ai~la~~a~~~Gadav~v~pP 162 (359)
||.+=++ +.+.++++++++...+.|+|.+-+...
T Consensus 213 ~v~vRis~~~~~~~~~~~g~~~~e~~~~~~~l~~~gvd~i~vs~g 257 (361)
T cd04747 213 PIILRFSQWKQQDYTARLADTPDELEALLAPLVDAGVDIFHCSTR 257 (361)
T ss_pred eEEEEECcccccccccCCCCCHHHHHHHHHHHHHcCCCEEEecCC
Confidence 7765333 357789999999999999999877554
No 270
>PLN02979 glycolate oxidase
Probab=85.77 E-value=32 Score=34.41 Aligned_cols=75 Identities=12% Similarity=0.181 Sum_probs=49.3
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEccCc------------------------------c--C---------------cCCC
Q 018253 76 FDLEAYDDLVNMQIVNGAEGMIVGGTT------------------------------G--E---------------GQLM 108 (359)
Q Consensus 76 ID~~~l~~li~~li~~Gv~Gl~v~Gst------------------------------G--E---------------~~~L 108 (359)
=|.+..++++++-.++|+.+|++.--+ + + -..+
T Consensus 131 ~Dr~~~~~ll~RA~~aG~~AlvlTVD~pv~G~R~rd~rn~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 210 (366)
T PLN02979 131 KNRNVVEQLVRRAERAGFKAIALTVDTPRLGRRESDIKNRFTLPPNLTLKNFEGLDLGKMDEANDSGLASYVAGQIDRTL 210 (366)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEEecCCCCCCchhhhccCCCCCcccchhhhhhccccCCCcccchhHHHHHhhcCCCCC
Confidence 367888999999999999988871100 0 0 1245
Q ss_pred CHHHHHHHHHHHHHhhCCCcEEEE-ecCCCCHHHHHHHHHHHHhCCCCEEEEcCC
Q 018253 109 SWDEHIMLIGHTVNCFGASVKVIG-NTGSNSTREAIHATEQGFAVGMHAALHINP 162 (359)
Q Consensus 109 T~~Er~~li~~~v~~~~grvpVia-gvg~~st~~ai~la~~a~~~Gadav~v~pP 162 (359)
|+++ ++...+.. ++|||+ ||.+ .+-++.+.++|+|++.+..-
T Consensus 211 tW~d----l~wlr~~~--~~PvivKgV~~------~~dA~~a~~~Gvd~I~Vsnh 253 (366)
T PLN02979 211 SWKD----VQWLQTIT--KLPILVKGVLT------GEDARIAIQAGAAGIIVSNH 253 (366)
T ss_pred CHHH----HHHHHhcc--CCCEEeecCCC------HHHHHHHHhcCCCEEEECCC
Confidence 6655 23333333 579888 6742 55667888899999988753
No 271
>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.
Probab=85.77 E-value=8.1 Score=33.35 Aligned_cols=110 Identities=17% Similarity=0.059 Sum_probs=66.1
Q ss_pred HHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCCCHHHHHHHHHHHHhCCCCEEEEcCCCC
Q 018253 85 VNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYY 164 (359)
Q Consensus 85 i~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~st~~ai~la~~a~~~Gadav~v~pP~y 164 (359)
..++.+.|++++.+.++.+-. .++-.++++.+.+.+ ++.++++.+......+... +.+.|+|.+.+.+-..
T Consensus 77 a~~~~~~g~d~v~l~~~~~~~----~~~~~~~~~~i~~~~-~~~~v~~~~~~~~~~~~~~----~~~~g~d~i~~~~~~~ 147 (200)
T cd04722 77 AAAARAAGADGVEIHGAVGYL----AREDLELIRELREAV-PDVKVVVKLSPTGELAAAA----AEEAGVDEVGLGNGGG 147 (200)
T ss_pred HHHHHHcCCCEEEEeccCCcH----HHHHHHHHHHHHHhc-CCceEEEEECCCCccchhh----HHHcCCCEEEEcCCcC
Confidence 567888999999999888643 455566777777766 4678988886543322111 5778999998886544
Q ss_pred CCCCH---HHHHHHHHHHHhc--CCeEEEeCCCCCCCCCCHHHHHHHhcC
Q 018253 165 GKTSL---EGLISHFDSVLSM--GPTIIYNVPSRTGQDIPPRVIHTMAQS 209 (359)
Q Consensus 165 ~~~s~---~~l~~yf~~Ia~a--~PiiiYn~P~~tg~~ls~e~l~~La~~ 209 (359)
..... .........+... .|++. + .|+. +++.+.++.+.
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~pi~~-~----GGi~-~~~~~~~~~~~ 191 (200)
T cd04722 148 GGGGRDAVPIADLLLILAKRGSKVPVIA-G----GGIN-DPEDAAEALAL 191 (200)
T ss_pred CCCCccCchhHHHHHHHHHhcCCCCEEE-E----CCCC-CHHHHHHHHHh
Confidence 32211 1112333334333 46544 2 2433 34777776643
No 272
>PRK11815 tRNA-dihydrouridine synthase A; Provisional
Probab=85.76 E-value=4.2 Score=40.00 Aligned_cols=85 Identities=15% Similarity=0.073 Sum_probs=55.4
Q ss_pred CHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHH-------HHHHHHHHHHHhhCCCcEEEEecCCCCHHHHHHHHHHH
Q 018253 77 DLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWD-------EHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQG 149 (359)
Q Consensus 77 D~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~-------Er~~li~~~v~~~~grvpViagvg~~st~~ai~la~~a 149 (359)
..+.+..+++.+.+.|++.|.+-|.|+.....+.. -..+.++.+.+.+ .++|||++=+=.+.+++.++.+
T Consensus 149 t~~~~~~~~~~l~~aG~d~i~vh~Rt~~~~g~~~~~~~~~~~~~~~~i~~v~~~~-~~iPVI~nGgI~s~eda~~~l~-- 225 (333)
T PRK11815 149 SYEFLCDFVDTVAEAGCDTFIVHARKAWLKGLSPKENREIPPLDYDRVYRLKRDF-PHLTIEINGGIKTLEEAKEHLQ-- 225 (333)
T ss_pred CHHHHHHHHHHHHHhCCCEEEEcCCchhhcCCCccccccCCCcCHHHHHHHHHhC-CCCeEEEECCcCCHHHHHHHHh--
Confidence 35667888999999999999998877622112211 0123344444433 2689887544456777766653
Q ss_pred HhCCCCEEEEcCCCCCCC
Q 018253 150 FAVGMHAALHINPYYGKT 167 (359)
Q Consensus 150 ~~~Gadav~v~pP~y~~~ 167 (359)
|+|+||+.-+.+..|
T Consensus 226 ---~aDgVmIGRa~l~nP 240 (333)
T PRK11815 226 ---HVDGVMIGRAAYHNP 240 (333)
T ss_pred ---cCCEEEEcHHHHhCC
Confidence 699999998888765
No 273
>TIGR00587 nfo apurinic endonuclease (APN1). All proteins in this family for which functions are known are 5' AP endonculeases that are used in base excision repair and the repair of abasic sites in DNA.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=85.64 E-value=33 Score=32.49 Aligned_cols=127 Identities=10% Similarity=-0.069 Sum_probs=76.6
Q ss_pred HHHHHHHHHHHCCCCEEEEccCccCcCCC---CHHHHHHHHHHHHHhhCC-------CcEEEEecCCCC-------HHHH
Q 018253 80 AYDDLVNMQIVNGAEGMIVGGTTGEGQLM---SWDEHIMLIGHTVNCFGA-------SVKVIGNTGSNS-------TREA 142 (359)
Q Consensus 80 ~l~~li~~li~~Gv~Gl~v~GstGE~~~L---T~~Er~~li~~~v~~~~g-------rvpViagvg~~s-------t~~a 142 (359)
.+.+-++++.+.|.+++=+.-..--++.- +.++..++-+. .+..+- ..|...+.++.+ .+..
T Consensus 12 ~~~~a~~~~~~~G~~~~qif~~~P~~w~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~Hapy~iNlas~~~~~r~~sv~~~ 90 (274)
T TIGR00587 12 GLQAAYNRAAEIGATAFMFFLKSPRWWRRPMLEEEVIDWFKAA-LETNKNLSQIVLVHAPYLINLASPDEEKEEKSLDVL 90 (274)
T ss_pred CHHHHHHHHHHhCCCEEEEEecCccccCCCCCCHHHHHHHHHH-HHHcCCCCcceeccCCeeeecCCCCHHHHHHHHHHH
Confidence 56778889999999998776666665543 34444444333 333321 123335555533 4446
Q ss_pred HHHHHHHHhCCCCEEEEcCCCCCCCCHHH----HHHHHHHHHhc---CCeEEEeCCCCCC-CCCCHHHHHHHh
Q 018253 143 IHATEQGFAVGMHAALHINPYYGKTSLEG----LISHFDSVLSM---GPTIIYNVPSRTG-QDIPPRVIHTMA 207 (359)
Q Consensus 143 i~la~~a~~~Gadav~v~pP~y~~~s~~~----l~~yf~~Ia~a---~PiiiYn~P~~tg-~~ls~e~l~~La 207 (359)
.+.++.|+.+||+.+.+.|.++...+.++ +.+.++.+.+. +++.+=|.|.... ..-+++.+.+|.
T Consensus 91 ~~~i~~A~~lga~~vv~H~G~~~~~~~e~~~~~~~~~l~~l~~~~~~v~l~lEN~~~~~~~l~~~~~el~~ll 163 (274)
T TIGR00587 91 DEELKRCELLGIMLYNFHPGSALKCSEEEGLDNLIESLNVVIKETKIVTILLENMAGQGSELGRSFEELAYII 163 (274)
T ss_pred HHHHHHHHHcCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHhccCCCEEEEEeCCCCCCccCCCHHHHHHHH
Confidence 66677788999998888877764433333 33334444432 5788888775432 223688888887
No 274
>PRK07028 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator; Validated
Probab=85.60 E-value=3.3 Score=42.06 Aligned_cols=106 Identities=9% Similarity=0.053 Sum_probs=64.1
Q ss_pred HHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCCCHHHHHHHHHHHHhCCCCEEEEcCCC
Q 018253 84 LVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPY 163 (359)
Q Consensus 84 li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~st~~ai~la~~a~~~Gadav~v~pP~ 163 (359)
.++...+.|++++.+.|.+.+ ..-.++++.+.+. .+++++|+.+ +...++.++.+.+.|+|.+.+. |.
T Consensus 73 ~v~~a~~aGAdgV~v~g~~~~------~~~~~~i~~a~~~---G~~~~~g~~s--~~t~~e~~~~a~~~GaD~I~~~-pg 140 (430)
T PRK07028 73 EVEMAAKAGADIVCILGLADD------STIEDAVRAARKY---GVRLMADLIN--VPDPVKRAVELEELGVDYINVH-VG 140 (430)
T ss_pred HHHHHHHcCCCEEEEecCCCh------HHHHHHHHHHHHc---CCEEEEEecC--CCCHHHHHHHHHhcCCCEEEEE-ec
Confidence 777888999999998765432 1223455555442 3577776432 2224566788889999999765 54
Q ss_pred CCCC-CHHHHHHHHHHHHhc--CCeEEEeCCCCCCCCCCHHHHHHHhc
Q 018253 164 YGKT-SLEGLISHFDSVLSM--GPTIIYNVPSRTGQDIPPRVIHTMAQ 208 (359)
Q Consensus 164 y~~~-s~~~l~~yf~~Ia~a--~PiiiYn~P~~tg~~ls~e~l~~La~ 208 (359)
|... ......++++++.+. .||+.- | .++++.+.++.+
T Consensus 141 ~~~~~~~~~~~~~l~~l~~~~~iPI~a~------G-GI~~~n~~~~l~ 181 (430)
T PRK07028 141 IDQQMLGKDPLELLKEVSEEVSIPIAVA------G-GLDAETAAKAVA 181 (430)
T ss_pred cchhhcCCChHHHHHHHHhhCCCcEEEE------C-CCCHHHHHHHHH
Confidence 4211 011234567777654 566552 1 457787777764
No 275
>PRK00915 2-isopropylmalate synthase; Validated
Probab=85.55 E-value=15 Score=38.47 Aligned_cols=103 Identities=13% Similarity=-0.028 Sum_probs=60.6
Q ss_pred HHHHHHHHHHHHCCCCEEEEccCccCcC-----CCCHHHHHHHHHHHHHhhCC-CcEEEEec---CCCCHHHHHHHHHHH
Q 018253 79 EAYDDLVNMQIVNGAEGMIVGGTTGEGQ-----LMSWDEHIMLIGHTVNCFGA-SVKVIGNT---GSNSTREAIHATEQG 149 (359)
Q Consensus 79 ~~l~~li~~li~~Gv~Gl~v~GstGE~~-----~LT~~Er~~li~~~v~~~~g-rvpViagv---g~~st~~ai~la~~a 149 (359)
+.+++.++.+.+.|++.+.+..++++.+ ..|.+|-.+.+..+++.+.. ...|..+. +..+.+..++.++.+
T Consensus 79 ~did~a~~a~~~~~~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~~g~~v~f~~ed~~r~d~~~l~~~~~~~ 158 (513)
T PRK00915 79 KDIDAAAEALKPAEAPRIHTFIATSPIHMEYKLKMSREEVLEMAVEAVKYARSYTDDVEFSAEDATRTDLDFLCRVVEAA 158 (513)
T ss_pred HHHHHHHHHhhcCCCCEEEEEECCcHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEeCCCCCCCHHHHHHHHHHH
Confidence 4455556666667777777777777665 55666666555555554431 23344443 234566677777777
Q ss_pred HhCCCCEEEEcCCCCCCCCHHHHHHHHHHHHhc
Q 018253 150 FAVGMHAALHINPYYGKTSLEGLISHFDSVLSM 182 (359)
Q Consensus 150 ~~~Gadav~v~pP~y~~~s~~~l~~yf~~Ia~a 182 (359)
.++|||.+.+. =.....+++++.+.++.+.+.
T Consensus 159 ~~~Ga~~i~l~-DTvG~~~P~~~~~~i~~l~~~ 190 (513)
T PRK00915 159 IDAGATTINIP-DTVGYTTPEEFGELIKTLRER 190 (513)
T ss_pred HHcCCCEEEEc-cCCCCCCHHHHHHHHHHHHHh
Confidence 77777754443 233344566677776666554
No 276
>PRK08185 hypothetical protein; Provisional
Probab=85.55 E-value=14 Score=35.56 Aligned_cols=118 Identities=20% Similarity=0.277 Sum_probs=72.1
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCC-CcEEEE--e-cCCC------CHHH----
Q 018253 76 FDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGA-SVKVIG--N-TGSN------STRE---- 141 (359)
Q Consensus 76 ID~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~g-rvpVia--g-vg~~------st~~---- 141 (359)
-|++. ++..++.|.+.+.+=|| .|+.+|-.++.+.+++.+.. .++|=+ | ++.. ...+
T Consensus 79 ~~~e~----i~~ai~~Gf~SVM~D~S-----~l~~eeNi~~t~~vv~~a~~~gv~vE~ElG~vg~~e~~~~~~~~~~~~t 149 (283)
T PRK08185 79 ATIED----VMRAIRCGFTSVMIDGS-----LLPYEENVALTKEVVELAHKVGVSVEGELGTIGNTGTSIEGGVSEIIYT 149 (283)
T ss_pred CCHHH----HHHHHHcCCCEEEEeCC-----CCCHHHHHHHHHHHHHHHHHcCCeEEEEEeeccCcccccccccccccCC
Confidence 35555 45567899999999887 47999999999999986543 344411 1 2210 0001
Q ss_pred HHHHHHHHHh-CCCCEEEE-----cCCCCC--CCCHHHHHHHHHHHHhc--CCeEEEeCCCCCCCCCCHHHHHHHhcC
Q 018253 142 AIHATEQGFA-VGMHAALH-----INPYYG--KTSLEGLISHFDSVLSM--GPTIIYNVPSRTGQDIPPRVIHTMAQS 209 (359)
Q Consensus 142 ai~la~~a~~-~Gadav~v-----~pP~y~--~~s~~~l~~yf~~Ia~a--~PiiiYn~P~~tg~~ls~e~l~~La~~ 209 (359)
..+.++.+.+ .|+|++.+ ...|-. ++.-+ ++..++|.+. .|++++ -|..++.+.+++..+.
T Consensus 150 ~peea~~f~~~TgvD~LAvaiGt~HG~y~~~~kp~L~--~e~l~~I~~~~~iPLVlH-----Ggsg~~~e~~~~ai~~ 220 (283)
T PRK08185 150 DPEQAEDFVSRTGVDTLAVAIGTAHGIYPKDKKPELQ--MDLLKEINERVDIPLVLH-----GGSANPDAEIAESVQL 220 (283)
T ss_pred CHHHHHHHHHhhCCCEEEeccCcccCCcCCCCCCCcC--HHHHHHHHHhhCCCEEEE-----CCCCCCHHHHHHHHHC
Confidence 2333444444 49998887 433433 23222 5566666655 688877 3556778888877654
No 277
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=85.53 E-value=18 Score=33.81 Aligned_cols=83 Identities=11% Similarity=0.019 Sum_probs=61.2
Q ss_pred CCCCHHHHHHHHHHHHHCCCCEEEEccC----------ccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCC-CHHHH
Q 018253 74 GRFDLEAYDDLVNMQIVNGAEGMIVGGT----------TGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSN-STREA 142 (359)
Q Consensus 74 g~ID~~~l~~li~~li~~Gv~Gl~v~Gs----------tGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~-st~~a 142 (359)
+.-|.+.+.+.++.+ +.++++|=++-+ .|+...-..+.-.++++.+.+ ..+||.+=+... ...++
T Consensus 75 ~~~~~ee~~~~a~~v-~~~~d~IdiN~gCP~~~v~~~g~G~~Ll~dp~~l~~iv~av~~---~~~PVsvKiR~~~~~~~~ 150 (231)
T TIGR00736 75 RFVDLEEAYDVLLTI-AEHADIIEINAHCRQPEITEIGIGQELLKNKELLKEFLTKMKE---LNKPIFVKIRGNCIPLDE 150 (231)
T ss_pred ecCCHHHHHHHHHHH-hcCCCEEEEECCCCcHHHcCCCCchhhcCCHHHHHHHHHHHHc---CCCcEEEEeCCCCCcchH
Confidence 456888899998876 558999988755 355555566656666666662 268998876643 34578
Q ss_pred HHHHHHHHhCCCCEEEEc
Q 018253 143 IHATEQGFAVGMHAALHI 160 (359)
Q Consensus 143 i~la~~a~~~Gadav~v~ 160 (359)
+++++.+++.|+|++.+-
T Consensus 151 ~~~a~~l~~aGad~i~Vd 168 (231)
T TIGR00736 151 LIDALNLVDDGFDGIHVD 168 (231)
T ss_pred HHHHHHHHHcCCCEEEEe
Confidence 999999999999999773
No 278
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=85.36 E-value=11 Score=31.97 Aligned_cols=84 Identities=7% Similarity=-0.029 Sum_probs=56.5
Q ss_pred HHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCCCHHHHHHHHHHHHhCCCCEEEEc
Q 018253 81 YDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHI 160 (359)
Q Consensus 81 l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~st~~ai~la~~a~~~Gadav~v~ 160 (359)
-+..++...+.+++-+.+++..+. +.+.-.++++...+.-.++++|++|=.- ..++ .+..+++|+|++.-
T Consensus 42 ~e~~v~aa~e~~adii~iSsl~~~----~~~~~~~~~~~L~~~g~~~i~vivGG~~-~~~~----~~~l~~~Gvd~~~~- 111 (132)
T TIGR00640 42 PEEIARQAVEADVHVVGVSSLAGG----HLTLVPALRKELDKLGRPDILVVVGGVI-PPQD----FDELKEMGVAEIFG- 111 (132)
T ss_pred HHHHHHHHHHcCCCEEEEcCchhh----hHHHHHHHHHHHHhcCCCCCEEEEeCCC-ChHh----HHHHHHCCCCEEEC-
Confidence 446777888999999999988876 5666677777766644447888886211 2222 23477899998753
Q ss_pred CCCCCCCCHHHHHHHHHH
Q 018253 161 NPYYGKTSLEGLISHFDS 178 (359)
Q Consensus 161 pP~y~~~s~~~l~~yf~~ 178 (359)
...+..++.+++..
T Consensus 112 ----~gt~~~~i~~~l~~ 125 (132)
T TIGR00640 112 ----PGTPIPESAIFLLK 125 (132)
T ss_pred ----CCCCHHHHHHHHHH
Confidence 23466777777765
No 279
>COG2159 Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]
Probab=85.33 E-value=24 Score=34.09 Aligned_cols=134 Identities=13% Similarity=0.143 Sum_probs=81.6
Q ss_pred HHHHHHCCCCEEEEccCccCcCCCCHHHH----HHHHHHHHHhhCCCcEEEEecCCCCHH-HHHHHHHHHHhCCCCEEEE
Q 018253 85 VNMQIVNGAEGMIVGGTTGEGQLMSWDEH----IMLIGHTVNCFGASVKVIGNTGSNSTR-EAIHATEQGFAVGMHAALH 159 (359)
Q Consensus 85 i~~li~~Gv~Gl~v~GstGE~~~LT~~Er----~~li~~~v~~~~grvpViagvg~~st~-~ai~la~~a~~~Gadav~v 159 (359)
++.+-+.|++..+.-+ .+|...+-...+ .++++.+.+ ...|.--.+.+--.+.+ .+.|+-|.+.+.|..++.+
T Consensus 55 ~~~~~~~~i~~~~~~~-~~~~~~~~d~~~~~~nd~~a~~~~~-~pdrf~~~~~v~p~~~~~a~~E~er~v~~~gf~g~~l 132 (293)
T COG2159 55 LAFMDAAGIDLFVLSG-MGEVAIIPDLRRALANDDLAALAAE-YPDRFVGFARVDPRDPEAAAEELERRVRELGFVGVKL 132 (293)
T ss_pred HhhhcccccceEEeec-cccccchHHHhhhhhhHHHHHHHhh-CCcceeeeeeeCCCchHHHHHHHHHHHHhcCceEEEe
Confidence 6666678888877776 445444444443 355555444 34453333333322324 4556666667789999999
Q ss_pred cCCCCC-CCCHHHHHHHHHHHHhc-CCeEEEeCCCCCCCCC-----CHHHHHHHh-cCCCeEEEeccCc
Q 018253 160 INPYYG-KTSLEGLISHFDSVLSM-GPTIIYNVPSRTGQDI-----PPRVIHTMA-QSPNLAGVKECVG 220 (359)
Q Consensus 160 ~pP~y~-~~s~~~l~~yf~~Ia~a-~PiiiYn~P~~tg~~l-----s~e~l~~La-~~pnivGiK~ss~ 220 (359)
.|..-. .++...+..-|+...+. +||+++.-+...+..+ .+-.+..++ ++|++.=|=--.|
T Consensus 133 ~p~~~~~~~~~~~~~pi~~~a~~~gvpv~ihtG~~~~~~~~~~~~~~p~~~~~va~~fP~l~IVl~H~G 201 (293)
T COG2159 133 HPVAQGFYPDDPRLYPIYEAAEELGVPVVIHTGAGPGGAGLEKGHSDPLYLDDVARKFPELKIVLGHMG 201 (293)
T ss_pred cccccCCCCCChHHHHHHHHHHHcCCCEEEEeCCCCCCcccccCCCCchHHHHHHHHCCCCcEEEEecC
Confidence 988654 56666677777777776 7999987554443322 345677777 6887554443333
No 280
>TIGR00343 pyridoxal 5'-phosphate synthase, synthase subunit Pdx1. This protein had been believed to be a singlet oxygen resistance protein. Subsequent work showed that it is a protein of pyridoxine (vitamin B6) biosynthesis, and that pyridoxine quenches the highly toxic singlet form of oxygen produced by light in the presence of certain chemicals.
Probab=85.23 E-value=2.4 Score=40.81 Aligned_cols=85 Identities=12% Similarity=0.185 Sum_probs=54.0
Q ss_pred HHHHHHHHhhCCCcEEE-EecCCC-CHHHHHHHHHHHHhCCCCEEEEcCCCCCCCCHHHHHHHHHHHHhcCCeEEEeCCC
Q 018253 115 MLIGHTVNCFGASVKVI-GNTGSN-STREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSMGPTIIYNVPS 192 (359)
Q Consensus 115 ~li~~~v~~~~grvpVi-agvg~~-st~~ai~la~~a~~~Gadav~v~pP~y~~~s~~~l~~yf~~Ia~a~PiiiYn~P~ 192 (359)
++++.+.+. .++||+ +..|+- +.+++.. +.++|+|++++..=.+...+++...+.|.+.... ||.|
T Consensus 187 elLkei~~~--~~iPVV~fAiGGI~TPedAa~----~melGAdGVaVGSaI~ks~dP~~~akafv~ai~~-----~~~~- 254 (287)
T TIGR00343 187 ELLLEVLKL--GKLPVVNFAAGGVATPADAAL----MMQLGADGVFVGSGIFKSSNPEKLAKAIVEATTH-----YDNP- 254 (287)
T ss_pred HHHHHHHHh--CCCCEEEeccCCCCCHHHHHH----HHHcCCCEEEEhHHhhcCCCHHHHHHHHHHHHHH-----cCCH-
Confidence 445555553 479998 567766 4444433 3458999999998877667777777766665544 7655
Q ss_pred CCCCCCCHHHHHHHhc-C-CCeEEEeccC
Q 018253 193 RTGQDIPPRVIHTMAQ-S-PNLAGVKECV 219 (359)
Q Consensus 193 ~tg~~ls~e~l~~La~-~-pnivGiK~ss 219 (359)
+.+++.++ + .-.+|+-.+.
T Consensus 255 --------~~~~e~s~~~~~~m~g~~~~~ 275 (287)
T TIGR00343 255 --------EKLAEVSKDLGEAMKGISISS 275 (287)
T ss_pred --------HHHHHHHccccccCCCCcccc
Confidence 46666663 3 3456665443
No 281
>PRK12344 putative alpha-isopropylmalate/homocitrate synthase family transferase; Provisional
Probab=85.07 E-value=16 Score=38.41 Aligned_cols=104 Identities=14% Similarity=0.090 Sum_probs=75.2
Q ss_pred HHHHHHHCCCCEEEEccCccCc-----CCCCHHHHHHHHHHHHHhhCC-CcEEEEecC------CCCHHHHHHHHHHHHh
Q 018253 84 LVNMQIVNGAEGMIVGGTTGEG-----QLMSWDEHIMLIGHTVNCFGA-SVKVIGNTG------SNSTREAIHATEQGFA 151 (359)
Q Consensus 84 li~~li~~Gv~Gl~v~GstGE~-----~~LT~~Er~~li~~~v~~~~g-rvpViagvg------~~st~~ai~la~~a~~ 151 (359)
-++.++++|++.+-+.-++++. ..+|.+|-.+.++.+++.+.. ...|.++.- ..+.+-.+++++.+.+
T Consensus 90 ~~e~~~~~g~~~i~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~~G~~v~~~~e~~~Da~r~d~~~l~~~~~~~~~ 169 (524)
T PRK12344 90 NLQALLDAGTPVVTIFGKSWDLHVTEALRTTLEENLAMIRDSVAYLKAHGREVIFDAEHFFDGYKANPEYALATLKAAAE 169 (524)
T ss_pred HHHHHHhCCCCEEEEEECCCHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCeEEEccccccccccCCHHHHHHHHHHHHh
Confidence 4566788999999999888864 457788888888877776542 234555333 2456778999999999
Q ss_pred CCCCEEEEcCCCCCCCCHHHHHHHHHHHHhc--CCeEEE
Q 018253 152 VGMHAALHINPYYGKTSLEGLISHFDSVLSM--GPTIIY 188 (359)
Q Consensus 152 ~Gadav~v~pP~y~~~s~~~l~~yf~~Ia~a--~PiiiY 188 (359)
+|+|.+.+ +=.....+++++.+.++.+.+. .||-++
T Consensus 170 ~Gad~i~l-~DTvG~~~P~~v~~li~~l~~~~~v~i~~H 207 (524)
T PRK12344 170 AGADWVVL-CDTNGGTLPHEVAEIVAEVRAAPGVPLGIH 207 (524)
T ss_pred CCCCeEEE-ccCCCCcCHHHHHHHHHHHHHhcCCeEEEE
Confidence 99998764 3345566788888888888776 465544
No 282
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=85.02 E-value=14 Score=35.15 Aligned_cols=98 Identities=15% Similarity=0.202 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCCCHHHHHHHHHHHHhCCCCEEEE
Q 018253 80 AYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALH 159 (359)
Q Consensus 80 ~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~st~~ai~la~~a~~~Gadav~v 159 (359)
++++.++.+.++|++|+++. ....+|.-++.+.+++.|.+-+.+
T Consensus 105 G~e~f~~~~~~aGvdGviip------------------------------------DLp~ee~~~~~~~~~~~gl~~I~l 148 (258)
T PRK13111 105 GVERFAADAAEAGVDGLIIP------------------------------------DLPPEEAEELRAAAKKHGLDLIFL 148 (258)
T ss_pred CHHHHHHHHHHcCCcEEEEC------------------------------------CCCHHHHHHHHHHHHHcCCcEEEE
Confidence 56666777777777777765 234566777777777777777777
Q ss_pred cCCCCCCCCHHHHHHHHHHHHhcCCeEEEe--CCCCCCC--CCC---HHHHHHHhc---CCCeEEEeccCc
Q 018253 160 INPYYGKTSLEGLISHFDSVLSMGPTIIYN--VPSRTGQ--DIP---PRVIHTMAQ---SPNLAGVKECVG 220 (359)
Q Consensus 160 ~pP~y~~~s~~~l~~yf~~Ia~a~PiiiYn--~P~~tg~--~ls---~e~l~~La~---~pnivGiK~ss~ 220 (359)
++|.. +++.+. .+++..+=+||- .-+.||. .++ .+.+.++.+ .|-++|.-.++.
T Consensus 149 vap~t---~~eri~----~i~~~s~gfIY~vs~~GvTG~~~~~~~~~~~~i~~vk~~~~~pv~vGfGI~~~ 212 (258)
T PRK13111 149 VAPTT---TDERLK----KIASHASGFVYYVSRAGVTGARSADAADLAELVARLKAHTDLPVAVGFGISTP 212 (258)
T ss_pred eCCCC---CHHHHH----HHHHhCCCcEEEEeCCCCCCcccCCCccHHHHHHHHHhcCCCcEEEEcccCCH
Confidence 76665 333322 244333323332 2223444 222 234555543 466666666544
No 283
>TIGR00977 LeuA_rel 2-isopropylmalate synthase/homocitrate synthase family protein. This model represents uncharacterized proteins related to 2-isopropylmalate synthases and homocitrate synthases but phylogenetically distint. Each species represented in the seed alignment also has a member of a known family of 2-isopropylmalate synthases.
Probab=85.01 E-value=13 Score=39.15 Aligned_cols=102 Identities=14% Similarity=0.059 Sum_probs=75.1
Q ss_pred HHHHHHHHHCCCCEEEEccCccCcC-----CCCHHHHHHHHHHHHHhhCCC-cEEEEec------CCCCHHHHHHHHHHH
Q 018253 82 DDLVNMQIVNGAEGMIVGGTTGEGQ-----LMSWDEHIMLIGHTVNCFGAS-VKVIGNT------GSNSTREAIHATEQG 149 (359)
Q Consensus 82 ~~li~~li~~Gv~Gl~v~GstGE~~-----~LT~~Er~~li~~~v~~~~gr-vpViagv------g~~st~~ai~la~~a 149 (359)
.+.++.+++.|.+.+-+..++++.+ .+|.+|-.+.+..+++.+... ..|..+. +..+.+..++.++.+
T Consensus 84 d~~~ea~~~~~~~~v~i~~~~Sd~h~~~~l~~s~ee~l~~~~~~v~~ak~~g~~V~~~~e~f~D~~r~~~~~l~~~~~~a 163 (526)
T TIGR00977 84 DKMLQALIKAETPVVTIFGKSWDLHVLEALQTTLEENLAMIYDTVAYLKRQGDEVIYDAEHFFDGYKANPEYALATLATA 163 (526)
T ss_pred HHHHHHHhcCCCCEEEEEeCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEEeeeeeecccCCHHHHHHHHHHH
Confidence 3456677788999999999998654 568888888877777765422 3343322 246789999999999
Q ss_pred HhCCCCEEEEcCCCCCCCCHHHHHHHHHHHHhcCC
Q 018253 150 FAVGMHAALHINPYYGKTSLEGLISHFDSVLSMGP 184 (359)
Q Consensus 150 ~~~Gadav~v~pP~y~~~s~~~l~~yf~~Ia~a~P 184 (359)
.++|||.+.+. =.....+++++.+.++.+.+..|
T Consensus 164 ~~aGad~i~i~-DTvG~~~P~~v~~li~~l~~~~~ 197 (526)
T TIGR00977 164 QQAGADWLVLC-DTNGGTLPHEISEITTKVKRSLK 197 (526)
T ss_pred HhCCCCeEEEe-cCCCCcCHHHHHHHHHHHHHhCC
Confidence 99999987765 34445678889999999887643
No 284
>cd01575 PBP1_GntR Ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. This group represents the ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of GntR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding,
Probab=84.96 E-value=25 Score=31.88 Aligned_cols=132 Identities=13% Similarity=0.178 Sum_probs=70.3
Q ss_pred CHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEE-----------ecCCCCHHHHHHH
Q 018253 77 DLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIG-----------NTGSNSTREAIHA 145 (359)
Q Consensus 77 D~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpVia-----------gvg~~st~~ai~l 145 (359)
|.+...+.++.+++.+++|+++.+... +.+.... ..+ .++||+. .++....+.+...
T Consensus 40 ~~~~~~~~~~~l~~~~vdgiii~~~~~-----~~~~~~~----~~~---~~ipvv~~~~~~~~~~~~~v~~d~~~~~~~~ 107 (268)
T cd01575 40 SPEREEELLRTLLSRRPAGLILTGLEH-----TERTRQL----LRA---AGIPVVEIMDLPPDPIDMAVGFSHAEAGRAM 107 (268)
T ss_pred CchhHHHHHHHHHHcCCCEEEEeCCCC-----CHHHHHH----HHh---cCCCEEEEecCCCCCCCCeEEeCcHHHHHHH
Confidence 446677889999999999999987553 2222122 111 1355543 2344456667777
Q ss_pred HHHHHhCCCCEEEEcCCCCCCCCHHHHHHHHHHHHhc--CC-eEEEeCCCCCCCCCCHHHHHHHh-cCCCeEEEeccCc
Q 018253 146 TEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSM--GP-TIIYNVPSRTGQDIPPRVIHTMA-QSPNLAGVKECVG 220 (359)
Q Consensus 146 a~~a~~~Gadav~v~pP~y~~~s~~~l~~yf~~Ia~a--~P-iiiYn~P~~tg~~ls~e~l~~La-~~pnivGiK~ss~ 220 (359)
+++..+.|-.-+.++.+........+-.+-|++..+. .+ ..++..+......-.-+.+.++. ++|.+.||=-.+.
T Consensus 108 ~~~l~~~g~~~i~~i~~~~~~~~~~~r~~gf~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d 186 (268)
T cd01575 108 ARHLLARGYRRIGFLGARMDDTRAQQRLEGFRAALRAAGLDPPLVVTTPEPSSFALGRELLAELLARWPDLDAVFCSND 186 (268)
T ss_pred HHHHHHCCCCcEEEecCCCCcccHHHHHHHHHHHHHHcCCCCCceeEeccCCCHHHHHHHHHHHHhCCCCCCEEEECCc
Confidence 8888888877776654433212223344445555443 22 12222221111111235566765 5677666664443
No 285
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=84.91 E-value=6.5 Score=38.11 Aligned_cols=88 Identities=15% Similarity=0.100 Sum_probs=61.1
Q ss_pred CCCCHHHHHHHHHHHHHCCCCEEEEccCccCcCCCC-------HHHHHHHHHHHHHhhCCCcEEEEecCCCC-HHHHHHH
Q 018253 74 GRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMS-------WDEHIMLIGHTVNCFGASVKVIGNTGSNS-TREAIHA 145 (359)
Q Consensus 74 g~ID~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT-------~~Er~~li~~~v~~~~grvpViagvg~~s-t~~ai~l 145 (359)
+..+.+....+++.+.+.|++.|-+.+.+.+..... .....+.++.+.+.+ ++||+++ |... .++
T Consensus 223 ~g~~~~e~~~la~~l~~~G~d~i~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~--~iPVi~~-Ggi~t~~~---- 295 (327)
T cd02803 223 GGLTLEEAIEIAKALEEAGVDALHVSGGSYESPPPIIPPPYVPEGYFLELAEKIKKAV--KIPVIAV-GGIRDPEV---- 295 (327)
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEeCCCCCcccccccCCCCCCcchhHHHHHHHHHHC--CCCEEEe-CCCCCHHH----
Confidence 447889999999999999999998888776654331 233456666666665 5888764 4444 433
Q ss_pred HHHHHhC-CCCEEEEcCCCCCCCC
Q 018253 146 TEQGFAV-GMHAALHINPYYGKTS 168 (359)
Q Consensus 146 a~~a~~~-Gadav~v~pP~y~~~s 168 (359)
++.+.+. |+|.|++.-|.+..|.
T Consensus 296 a~~~l~~g~aD~V~igR~~ladP~ 319 (327)
T cd02803 296 AEEILAEGKADLVALGRALLADPD 319 (327)
T ss_pred HHHHHHCCCCCeeeecHHHHhCcc
Confidence 3334445 7999999988876553
No 286
>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4.2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....
Probab=84.84 E-value=6.6 Score=37.37 Aligned_cols=84 Identities=17% Similarity=0.241 Sum_probs=53.6
Q ss_pred EEeeecCCCCCCCCCHHHHHHHHHHHHHCCCCEEE---EccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCCCH
Q 018253 63 ITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMI---VGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNST 139 (359)
Q Consensus 63 ~~al~TPF~~dg~ID~~~l~~li~~li~~Gv~Gl~---v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~st 139 (359)
...++||-+.+ +.++++.+. +.|- +| ..|+||+-..+. ++-.+.++.+.+.+ ++||++|.|=.+.
T Consensus 143 ~I~lv~p~t~~-----~Ri~~i~~~--a~gF--iY~vs~~GvTG~~~~~~-~~l~~~i~~ik~~~--~~Pv~vGFGI~~~ 210 (259)
T PF00290_consen 143 LIPLVAPTTPE-----ERIKKIAKQ--ASGF--IYLVSRMGVTGSRTELP-DELKEFIKRIKKHT--DLPVAVGFGISTP 210 (259)
T ss_dssp EEEEEETTS-H-----HHHHHHHHH---SSE--EEEESSSSSSSTTSSCH-HHHHHHHHHHHHTT--SS-EEEESSS-SH
T ss_pred EEEEECCCCCH-----HHHHHHHHh--CCcE--EEeeccCCCCCCcccch-HHHHHHHHHHHhhc--CcceEEecCCCCH
Confidence 45667776543 344444331 2332 33 378999998875 56778888888776 7899999996555
Q ss_pred HHHHHHHHHHHhCCCCEEEEcCCC
Q 018253 140 REAIHATEQGFAVGMHAALHINPY 163 (359)
Q Consensus 140 ~~ai~la~~a~~~Gadav~v~pP~ 163 (359)
+++-++ . .|||++++-.-.
T Consensus 211 e~~~~~----~-~~aDGvIVGSa~ 229 (259)
T PF00290_consen 211 EQAKKL----A-AGADGVIVGSAF 229 (259)
T ss_dssp HHHHHH----H-TTSSEEEESHHH
T ss_pred HHHHHH----H-ccCCEEEECHHH
Confidence 544333 3 789999997543
No 287
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=84.77 E-value=11 Score=34.30 Aligned_cols=111 Identities=12% Similarity=0.081 Sum_probs=64.6
Q ss_pred HHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCCCHHHHHHHHHHHHhCCCCEEEEcC
Q 018253 82 DDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHIN 161 (359)
Q Consensus 82 ~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~st~~ai~la~~a~~~Gadav~v~p 161 (359)
...++.+++.|++.+++..+...-+. .++-.++++.+.+.. ++++++++. +.++ ++.+.++|+|.+.+.+
T Consensus 82 ~~~~~~a~~aGad~I~~~~~~~~~p~--~~~~~~~i~~~~~~g--~~~iiv~v~--t~~e----a~~a~~~G~d~i~~~~ 151 (219)
T cd04729 82 IEEVDALAAAGADIIALDATDRPRPD--GETLAELIKRIHEEY--NCLLMADIS--TLEE----ALNAAKLGFDIIGTTL 151 (219)
T ss_pred HHHHHHHHHcCCCEEEEeCCCCCCCC--CcCHHHHHHHHHHHh--CCeEEEECC--CHHH----HHHHHHcCCCEEEccC
Confidence 45788999999998877654432111 024456666666543 688888764 3444 4677889999875532
Q ss_pred CCCCCC---CHHHHHHHHHHHHhc--CCeEEEeCCCCCCCCC-CHHHHHHHhcC
Q 018253 162 PYYGKT---SLEGLISHFDSVLSM--GPTIIYNVPSRTGQDI-PPRVIHTMAQS 209 (359)
Q Consensus 162 P~y~~~---s~~~l~~yf~~Ia~a--~PiiiYn~P~~tg~~l-s~e~l~~La~~ 209 (359)
--+... +...-.++.+++.+. .|++. +-.+ +++.+.++.+.
T Consensus 152 ~g~t~~~~~~~~~~~~~l~~i~~~~~ipvia-------~GGI~~~~~~~~~l~~ 198 (219)
T cd04729 152 SGYTEETAKTEDPDFELLKELRKALGIPVIA-------EGRINSPEQAAKALEL 198 (219)
T ss_pred ccccccccCCCCCCHHHHHHHHHhcCCCEEE-------eCCCCCHHHHHHHHHC
Confidence 111110 111124566666654 46553 2245 57788887653
No 288
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=84.72 E-value=36 Score=32.19 Aligned_cols=159 Identities=16% Similarity=0.039 Sum_probs=85.4
Q ss_pred HHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCCCHHHHHHHHHHHHhCCCCEEEEc
Q 018253 81 YDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHI 160 (359)
Q Consensus 81 l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~st~~ai~la~~a~~~Gadav~v~ 160 (359)
..++...+.+.|+++|.++--.--| .=+ .+.++.+.+.+ ++||+. -..-+..- ++..+.++|||++.++
T Consensus 72 ~~~~A~~~~~~GA~aisvlte~~~f-~g~----~~~l~~v~~~v--~iPvl~--kdfi~~~~--qi~~a~~~GAD~VlLi 140 (260)
T PRK00278 72 PVEIAKAYEAGGAACLSVLTDERFF-QGS----LEYLRAARAAV--SLPVLR--KDFIIDPY--QIYEARAAGADAILLI 140 (260)
T ss_pred HHHHHHHHHhCCCeEEEEecccccC-CCC----HHHHHHHHHhc--CCCEEe--eeecCCHH--HHHHHHHcCCCEEEEE
Confidence 3466667778999999874322111 111 34455555544 689996 22222222 6888889999999998
Q ss_pred CCCCCCCCHHHHHHHHHHHHhc-CCeEEEeCCCCCCCCCCHHHHHHHhc-CCCeEEEeccC-----chh----hHhhhhC
Q 018253 161 NPYYGKTSLEGLISHFDSVLSM-GPTIIYNVPSRTGQDIPPRVIHTMAQ-SPNLAGVKECV-----GND----RVEHYTG 229 (359)
Q Consensus 161 pP~y~~~s~~~l~~yf~~Ia~a-~PiiiYn~P~~tg~~ls~e~l~~La~-~pnivGiK~ss-----~d~----~l~~~~~ 229 (359)
.-.. +.+.+.+.++...+. +.+++- . -+.+.+.+..+ -+.++|+-.-+ .|. ++.....
T Consensus 141 ~~~l---~~~~l~~li~~a~~lGl~~lve-v-------h~~~E~~~A~~~gadiIgin~rdl~~~~~d~~~~~~l~~~~p 209 (260)
T PRK00278 141 VAAL---DDEQLKELLDYAHSLGLDVLVE-V-------HDEEELERALKLGAPLIGINNRNLKTFEVDLETTERLAPLIP 209 (260)
T ss_pred eccC---CHHHHHHHHHHHHHcCCeEEEE-e-------CCHHHHHHHHHcCCCEEEECCCCcccccCCHHHHHHHHHhCC
Confidence 6664 345666666655544 333322 1 12334444444 46788874210 111 2222222
Q ss_pred CceEEE--ecCC-chhhhhhhhcCCceeecccccc
Q 018253 230 NGIVVW--SGND-DQCHDARWNHGATGVISVTSNL 261 (359)
Q Consensus 230 ~~~~v~--~G~d-~~~~~~~l~~Ga~G~is~~an~ 261 (359)
.+..++ +|-. ..-+...+.+|++|++-|.+-.
T Consensus 210 ~~~~vIaegGI~t~ed~~~~~~~Gad~vlVGsaI~ 244 (260)
T PRK00278 210 SDRLVVSESGIFTPEDLKRLAKAGADAVLVGESLM 244 (260)
T ss_pred CCCEEEEEeCCCCHHHHHHHHHcCCCEEEECHHHc
Confidence 222223 3432 1222334678999998776644
No 289
>cd04741 DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) class 1A FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=84.60 E-value=34 Score=32.92 Aligned_cols=82 Identities=11% Similarity=0.018 Sum_probs=55.4
Q ss_pred CHHHHHHHHHHHHHhh-CCCcEEEEecCCCCHHHHHHHHHHHHhC---CCCEEEE--cCCCCC-----CCCHHHHHHHHH
Q 018253 109 SWDEHIMLIGHTVNCF-GASVKVIGNTGSNSTREAIHATEQGFAV---GMHAALH--INPYYG-----KTSLEGLISHFD 177 (359)
Q Consensus 109 T~~Er~~li~~~v~~~-~grvpViagvg~~st~~ai~la~~a~~~---Gadav~v--~pP~y~-----~~s~~~l~~yf~ 177 (359)
..++..+.++...+.. ....||++++.+. .++-++.++..++. |+|++-+ .-|... ..+.+.+.+..+
T Consensus 72 g~~~~~~~i~~~~~~~~~~~~pvivsi~g~-~~~~~~~~~~~~~~~~~~ad~ielN~sCPn~~~~~~~~~~~~~~~~i~~ 150 (294)
T cd04741 72 GLDYYLEYIRTISDGLPGSAKPFFISVTGS-AEDIAAMYKKIAAHQKQFPLAMELNLSCPNVPGKPPPAYDFDATLEYLT 150 (294)
T ss_pred CHHHHHHHHHHHhhhccccCCeEEEECCCC-HHHHHHHHHHHHhhccccccEEEEECCCCCCCCcccccCCHHHHHHHHH
Confidence 3555555555433322 1357999999988 99999999998886 6998865 224321 124677888888
Q ss_pred HHHhc--CCeEEEeCC
Q 018253 178 SVLSM--GPTIIYNVP 191 (359)
Q Consensus 178 ~Ia~a--~PiiiYn~P 191 (359)
+|.++ .||++==-|
T Consensus 151 ~v~~~~~iPv~vKl~p 166 (294)
T cd04741 151 AVKAAYSIPVGVKTPP 166 (294)
T ss_pred HHHHhcCCCEEEEeCC
Confidence 88775 688876555
No 290
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=84.54 E-value=27 Score=35.99 Aligned_cols=138 Identities=11% Similarity=0.034 Sum_probs=77.0
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEccCccCcCC----CC--HHHHHHHHHHHHHhhCCCcEEE--------EecCCCCHH
Q 018253 75 RFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQL----MS--WDEHIMLIGHTVNCFGASVKVI--------GNTGSNSTR 140 (359)
Q Consensus 75 ~ID~~~l~~li~~li~~Gv~Gl~v~GstGE~~~----LT--~~Er~~li~~~v~~~~grvpVi--------agvg~~st~ 140 (359)
.+..+....+++.|.+.|++-|=+.|..+ |.. ++ ..|+.+.+ .+... ++++. .|.....-+
T Consensus 22 ~~~t~dkl~ia~~Ld~~Gv~~IE~~ggat-f~~~~~f~~e~p~e~l~~l---~~~~~-~~~l~~l~r~~N~~G~~~~pdd 96 (448)
T PRK12331 22 RMTTEEMLPILEKLDNAGYHSLEMWGGAT-FDACLRFLNEDPWERLRKI---RKAVK-KTKLQMLLRGQNLLGYRNYADD 96 (448)
T ss_pred ccCHHHHHHHHHHHHHcCCCEEEecCCcc-chhhhccCCCCHHHHHHHH---HHhCC-CCEEEEEeccccccccccCchh
Confidence 46778888999999999999998865432 322 44 44444444 33332 45553 344333333
Q ss_pred HHHHHHHHHHhCCCCEEEEcCCCCCCCCHHHHHHHHHHHHhcC-CeEEEeCCCCCCCCCCHHHHHHHh----cC-CCeEE
Q 018253 141 EAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSMG-PTIIYNVPSRTGQDIPPRVIHTMA----QS-PNLAG 214 (359)
Q Consensus 141 ~ai~la~~a~~~Gadav~v~pP~y~~~s~~~l~~yf~~Ia~a~-PiiiYn~P~~tg~~ls~e~l~~La----~~-pnivG 214 (359)
-..+..+.|.+.|+|.+-+..+.-...+-++.+++.++..-.. ..+-|-.- -..+++.+.+++ +. ...+.
T Consensus 97 vv~~~v~~A~~~Gvd~irif~~lnd~~n~~~~v~~ak~~G~~v~~~i~~t~~----p~~~~~~~~~~a~~l~~~Gad~I~ 172 (448)
T PRK12331 97 VVESFVQKSVENGIDIIRIFDALNDVRNLETAVKATKKAGGHAQVAISYTTS----PVHTIDYFVKLAKEMQEMGADSIC 172 (448)
T ss_pred hHHHHHHHHHHCCCCEEEEEEecCcHHHHHHHHHHHHHcCCeEEEEEEeecC----CCCCHHHHHHHHHHHHHcCCCEEE
Confidence 4556778889999998877655332222233333222211111 22334321 124555555444 43 57899
Q ss_pred EeccCch
Q 018253 215 VKECVGN 221 (359)
Q Consensus 215 iK~ss~d 221 (359)
+||+.|-
T Consensus 173 i~Dt~G~ 179 (448)
T PRK12331 173 IKDMAGI 179 (448)
T ss_pred EcCCCCC
Confidence 9999985
No 291
>TIGR01464 hemE uroporphyrinogen decarboxylase. This model represents uroporphyrinogen decarboxylase (HemE), which converts uroporphyrinogen III to coproporphyrinogen III. This step takes the pathway toward protoporphyrin IX, a common precursor of both heme and chlorophyll, rather than toward precorrin 2 and its products.
Probab=84.49 E-value=29 Score=33.83 Aligned_cols=44 Identities=16% Similarity=0.201 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHhCCCCEEEEcCCCCCCCCHHHHHHHH----HHHHhc
Q 018253 139 TREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHF----DSVLSM 182 (359)
Q Consensus 139 t~~ai~la~~a~~~Gadav~v~pP~y~~~s~~~l~~yf----~~Ia~a 182 (359)
++..+++++...++|||++++..|.....|+++..+|+ ++|.+.
T Consensus 179 t~~~~~~~~~~~eaGad~i~i~d~~~~~lsp~~f~ef~~p~~k~i~~~ 226 (338)
T TIGR01464 179 TDATIEYLVEQVKAGAQAVQIFDSWAGALSPEDFEEFVLPYLKKIIEE 226 (338)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCccccCCHHHHHHHHHHHHHHHHHH
Confidence 44466777777789999998888855556766655444 566553
No 292
>PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes. Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F ....
Probab=84.48 E-value=8 Score=35.83 Aligned_cols=74 Identities=15% Similarity=0.219 Sum_probs=55.5
Q ss_pred HHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCCCHHHHHHHHHHHHhCCCCEEEEc
Q 018253 81 YDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHI 160 (359)
Q Consensus 81 l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~st~~ai~la~~a~~~Gadav~v~ 160 (359)
+...++++.+.|+..+++.--.-|+...-.+. ++++.+.+.+ ++|||++=|-.+.++-.++. +.|++++++-
T Consensus 149 ~~~~~~~~~~~g~~~ii~tdi~~dGt~~G~d~--~~~~~l~~~~--~~~viasGGv~~~~Dl~~l~----~~G~~gvivg 220 (229)
T PF00977_consen 149 LEEFAKRLEELGAGEIILTDIDRDGTMQGPDL--ELLKQLAEAV--NIPVIASGGVRSLEDLRELK----KAGIDGVIVG 220 (229)
T ss_dssp HHHHHHHHHHTT-SEEEEEETTTTTTSSS--H--HHHHHHHHHH--SSEEEEESS--SHHHHHHHH----HTTECEEEES
T ss_pred HHHHHHHHHhcCCcEEEEeeccccCCcCCCCH--HHHHHHHHHc--CCCEEEecCCCCHHHHHHHH----HCCCcEEEEe
Confidence 45667778889999999999999988887775 6677877777 68999987776788776665 7999999886
Q ss_pred CC
Q 018253 161 NP 162 (359)
Q Consensus 161 pP 162 (359)
.=
T Consensus 221 ~a 222 (229)
T PF00977_consen 221 SA 222 (229)
T ss_dssp HH
T ss_pred hH
Confidence 43
No 293
>cd00717 URO-D Uroporphyrinogen decarboxylase (URO-D) is a dimeric cytosolic enzyme that decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, without requiring any prosthetic groups or cofactors. This reaction is located at the branching point of the tetrapyrrole biosynthetic pathway, leading to the biosynthesis of heme, chlorophyll or bacteriochlorophyll. URO-D deficiency is responsible for the human genetic diseases familial porphyria cutanea tarda (fPCT) and hepatoerythropoietic porphyria (HEP).
Probab=84.30 E-value=34 Score=33.26 Aligned_cols=93 Identities=14% Similarity=0.168 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHHhCCCCEEEEcCCCCCCCCHHHHHHH----HHHHHhc----C-C-eEEEeCCCCCCCCCCHHHHHHHhc
Q 018253 139 TREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISH----FDSVLSM----G-P-TIIYNVPSRTGQDIPPRVIHTMAQ 208 (359)
Q Consensus 139 t~~ai~la~~a~~~Gadav~v~pP~y~~~s~~~l~~y----f~~Ia~a----~-P-iiiYn~P~~tg~~ls~e~l~~La~ 208 (359)
++..+++++...++|||++++.-|.....|++...+| +++|.+. . . .++|.. . |. ...+..+.+
T Consensus 176 t~~~~~~~~~~ieaGad~i~i~d~~~~~lsp~~f~ef~~P~~k~i~~~i~~~~~~~~ilh~c-g--~~---~~~~~~~~~ 249 (335)
T cd00717 176 TDATIEYLKAQIEAGAQAVQIFDSWAGALSPEDFEEFVLPYLKRIIEEVKKRLPGVPVILFA-K--GA---GGLLEDLAQ 249 (335)
T ss_pred HHHHHHHHHHHHHhCCCEEEEeCcccccCCHHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEc-C--CC---HHHHHHHHh
Confidence 4556788888888999999988885555676665544 4666654 2 1 234432 2 22 256777777
Q ss_pred CC-CeEEEeccCchh-hHhhhhCCceEEEecC
Q 018253 209 SP-NLAGVKECVGND-RVEHYTGNGIVVWSGN 238 (359)
Q Consensus 209 ~p-nivGiK~ss~d~-~l~~~~~~~~~v~~G~ 238 (359)
.+ ++.++=.. .|. ..++..+++..+..+.
T Consensus 250 ~~~~~~s~d~~-~dl~e~k~~~g~~~~i~Gni 280 (335)
T cd00717 250 LGADVVGLDWR-VDLDEARKRLGPKVALQGNL 280 (335)
T ss_pred cCCCEEEeCCC-CCHHHHHHHhCCCeEEEeCC
Confidence 54 55444322 232 3444444445444333
No 294
>TIGR03822 AblA_like_2 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in Rhodopseudomonas, Caulobacter crescentus, Bradyrhizobium, etc.
Probab=84.14 E-value=44 Score=32.64 Aligned_cols=128 Identities=12% Similarity=0.044 Sum_probs=75.5
Q ss_pred CCCCCHHHHHHHHHHHHHC-CCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcE-EEEecC---CCCHHHHHHHHH
Q 018253 73 DGRFDLEAYDDLVNMQIVN-GAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVK-VIGNTG---SNSTREAIHATE 147 (359)
Q Consensus 73 dg~ID~~~l~~li~~li~~-Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvp-Viagvg---~~st~~ai~la~ 147 (359)
.+.++.+.+.+.++++.+. |+..+++.| ||-..++.+.-.++++.+.+. + .+. +=.++. .+...-+-++++
T Consensus 116 ~~~l~~~e~~~~i~~i~~~~~I~~VilSG--GDPl~~~~~~L~~ll~~l~~i-~-~v~~iri~Tr~~v~~p~rit~ell~ 191 (321)
T TIGR03822 116 LGVLSPAELDAAFAYIADHPEIWEVILTG--GDPLVLSPRRLGDIMARLAAI-D-HVKIVRFHTRVPVADPARVTPALIA 191 (321)
T ss_pred cCcCCHHHHHHHHHHHHhCCCccEEEEeC--CCcccCCHHHHHHHHHHHHhC-C-CccEEEEeCCCcccChhhcCHHHHH
Confidence 3567889999999998764 899888777 899999888888888887652 2 222 122321 122333446666
Q ss_pred HHHhCCCCEEEEcCCCC-CC-CCHHHHHHHHHHHHhc-CCeEEEeCCCCCCCCCCHHHHHHHh
Q 018253 148 QGFAVGMHAALHINPYY-GK-TSLEGLISHFDSVLSM-GPTIIYNVPSRTGQDIPPRVIHTMA 207 (359)
Q Consensus 148 ~a~~~Gadav~v~pP~y-~~-~s~~~l~~yf~~Ia~a-~PiiiYn~P~~tg~~ls~e~l~~La 207 (359)
...+.|.. +.+..-.. .. .+ ++..+-.+.+.++ .++.... .-..|++-+.+.+.+|.
T Consensus 192 ~L~~~g~~-v~i~l~~~h~~el~-~~~~~ai~~L~~~Gi~v~~q~-vLl~gvNd~~~~l~~l~ 251 (321)
T TIGR03822 192 ALKTSGKT-VYVALHANHARELT-AEARAACARLIDAGIPMVSQS-VLLRGVNDDPETLAALM 251 (321)
T ss_pred HHHHcCCc-EEEEecCCChhhcC-HHHHHHHHHHHHcCCEEEEEe-eEeCCCCCCHHHHHHHH
Confidence 77777743 32221111 11 12 4455555555555 3443332 22347777777777665
No 295
>PLN03228 methylthioalkylmalate synthase; Provisional
Probab=84.14 E-value=44 Score=34.92 Aligned_cols=138 Identities=16% Similarity=0.088 Sum_probs=83.9
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhC--C-----CcEEEEecCCCCHHHHHHHHH
Q 018253 75 RFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFG--A-----SVKVIGNTGSNSTREAIHATE 147 (359)
Q Consensus 75 ~ID~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~--g-----rvpViagvg~~st~~ai~la~ 147 (359)
.+..+.-.++++.|.+.||+-|=+ | ++..+.+|+..+ +.+.+... + -.+.+.+.+....+ -++.+.
T Consensus 102 ~fs~eeKi~Ia~~L~~~GVd~IEv-G----~Pa~s~~e~e~i-~~i~~~~~~~~~~~~~l~~~i~a~~R~~~~-dId~a~ 174 (503)
T PLN03228 102 SLTPPQKLEIARQLAKLRVDIMEV-G----FPGSSEEEFEAV-KTIAKTVGNEVDEETGYVPVICGIARCKKR-DIEAAW 174 (503)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEE-e----CCCCCHHHHHHH-HHHHHhcccccccccccceEEeeecccCHh-hHHHHH
Confidence 488899999999999999997665 3 377888887663 44444321 1 13666666654433 344444
Q ss_pred HH-HhCCCCEEEEcCCCC-------CCCCHHHHHHHHHHHHhc----C-CeEEEeCCCCCCCCCCHHHHHHHh----c-C
Q 018253 148 QG-FAVGMHAALHINPYY-------GKTSLEGLISHFDSVLSM----G-PTIIYNVPSRTGQDIPPRVIHTMA----Q-S 209 (359)
Q Consensus 148 ~a-~~~Gadav~v~pP~y-------~~~s~~~l~~yf~~Ia~a----~-PiiiYn~P~~tg~~ls~e~l~~La----~-~ 209 (359)
.+ ...|++.+.+..|.- .+.+.++.++-+.+..+. . ..+.+..+..+ .-+++.+.+++ + -
T Consensus 175 ~a~~~a~~~~V~i~i~~Sd~h~~~kl~~s~ee~l~~~~~~V~~Ak~~G~~~v~f~~EDa~--Rtd~efl~~~~~~a~~~G 252 (503)
T PLN03228 175 EALKYAKRPRILAFTSTSDIHMKYKLKKTKEEVIEMAVSSIRYAKSLGFHDIQFGCEDGG--RSDKEFLCKILGEAIKAG 252 (503)
T ss_pred HhhcccCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCceEEecccccc--ccCHHHHHHHHHHHHhcC
Confidence 43 334777787766632 234566665555554432 2 23556555432 34566665554 3 3
Q ss_pred CCeEEEeccCch
Q 018253 210 PNLAGVKECVGN 221 (359)
Q Consensus 210 pnivGiK~ss~d 221 (359)
...+.++|+.|-
T Consensus 253 ad~I~l~DTvG~ 264 (503)
T PLN03228 253 ATSVGIADTVGI 264 (503)
T ss_pred CCEEEEecCCCC
Confidence 677889999885
No 296
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=84.08 E-value=20 Score=34.14 Aligned_cols=19 Identities=16% Similarity=0.455 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHCCCCEEEE
Q 018253 80 AYDDLVNMQIVNGAEGMIV 98 (359)
Q Consensus 80 ~l~~li~~li~~Gv~Gl~v 98 (359)
++++.++.+.++|++|+++
T Consensus 107 G~e~F~~~~~~aGvdgvii 125 (263)
T CHL00200 107 GINKFIKKISQAGVKGLII 125 (263)
T ss_pred CHHHHHHHHHHcCCeEEEe
Confidence 4455555555666666553
No 297
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=83.99 E-value=9.1 Score=35.98 Aligned_cols=89 Identities=13% Similarity=0.159 Sum_probs=58.9
Q ss_pred HHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCCCHHHHHHHHHHHHhCC-CCEEEE
Q 018253 81 YDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVG-MHAALH 159 (359)
Q Consensus 81 l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~st~~ai~la~~a~~~G-adav~v 159 (359)
...+++.+.+.|++.+.+.+-+.++..=.. ..++++.+.+.+ ++|||+.=|-.+.++..++.+ .| +|++++
T Consensus 157 ~~~~~~~l~~~G~~~iivt~i~~~g~~~g~--~~~~~~~i~~~~--~ipvia~GGi~s~~di~~~~~----~g~~dgv~~ 228 (254)
T TIGR00735 157 AVEWAKEVEKLGAGEILLTSMDKDGTKSGY--DLELTKAVSEAV--KIPVIASGGAGKPEHFYEAFT----KGKADAALA 228 (254)
T ss_pred HHHHHHHHHHcCCCEEEEeCcCcccCCCCC--CHHHHHHHHHhC--CCCEEEeCCCCCHHHHHHHHH----cCCcceeeE
Confidence 356777788999999999665554432111 134566666655 589998666666777665543 46 999988
Q ss_pred cCCCCC-CCCHHHHHHHHH
Q 018253 160 INPYYG-KTSLEGLISHFD 177 (359)
Q Consensus 160 ~pP~y~-~~s~~~l~~yf~ 177 (359)
..=.|. ..+.+++.++.+
T Consensus 229 g~a~~~~~~~~~~~~~~~~ 247 (254)
T TIGR00735 229 ASVFHYREITIGEVKEYLA 247 (254)
T ss_pred hHHHhCCCCCHHHHHHHHH
Confidence 776664 567777766655
No 298
>PRK11572 copper homeostasis protein CutC; Provisional
Probab=83.97 E-value=12 Score=35.47 Aligned_cols=129 Identities=15% Similarity=0.118 Sum_probs=85.9
Q ss_pred eeecCCCCCC---CCCHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCCCHHH
Q 018253 65 AIKTPYLPDG---RFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTRE 141 (359)
Q Consensus 65 al~TPF~~dg---~ID~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~st~~ 141 (359)
+++=|-..|. +-+++.+.+-++.+.+.|++||+++.-|-++ .+..+--++|++. + +..|+..+=.-..+.+
T Consensus 56 vMIRPR~gdF~Ys~~E~~~M~~di~~~~~~GadGvV~G~L~~dg-~vD~~~~~~Li~~----a-~~~~vTFHRAfD~~~d 129 (248)
T PRK11572 56 PIIRPRGGDFCYSDGEFAAMLEDIATVRELGFPGLVTGVLDVDG-HVDMPRMRKIMAA----A-GPLAVTFHRAFDMCAN 129 (248)
T ss_pred EEEecCCCCCCCCHHHHHHHHHHHHHHHHcCCCEEEEeeECCCC-CcCHHHHHHHHHH----h-cCCceEEechhhccCC
Confidence 4555543342 3566778888899999999999987777655 3555545555544 3 3578888755444556
Q ss_pred HHHHHHHHHhCCCCEEEEcCCCCCCCCHHHHHHHHHHHHhc-CCeEEEeCCCCCCCCCCHHHHHHHh
Q 018253 142 AIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSM-GPTIIYNVPSRTGQDIPPRVIHTMA 207 (359)
Q Consensus 142 ai~la~~a~~~Gadav~v~pP~y~~~s~~~l~~yf~~Ia~a-~PiiiYn~P~~tg~~ls~e~l~~La 207 (359)
..+..+...++|++.|+-. -..++..+-.+..+++.+. ...+| .| |-.+.++-+.+|.
T Consensus 130 ~~~al~~l~~lG~~rILTS---Gg~~~a~~g~~~L~~lv~~a~~~~I--m~---GgGV~~~Nv~~l~ 188 (248)
T PRK11572 130 PLNALKQLADLGVARILTS---GQQQDAEQGLSLIMELIAASDGPII--MA---GAGVRLSNLHKFL 188 (248)
T ss_pred HHHHHHHHHHcCCCEEECC---CCCCCHHHHHHHHHHHHHhcCCCEE--Ee---CCCCCHHHHHHHH
Confidence 6677777888999999875 4445566666777777664 22222 23 5568888888885
No 299
>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene [].; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.
Probab=83.95 E-value=13 Score=33.83 Aligned_cols=124 Identities=12% Similarity=0.072 Sum_probs=69.4
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCCCHHHHHHHHHHHHhCCCC
Q 018253 76 FDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMH 155 (359)
Q Consensus 76 ID~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~st~~ai~la~~a~~~Gad 155 (359)
+-.-..-+.++-+++.|++-+.+=+|.=+-+ .|.+| +++...+. + ..+|+-+++ +|-++.|.++|+|
T Consensus 48 V~ITPT~~ev~~l~~aGadIIAlDaT~R~Rp-~~l~~---li~~i~~~--~-~l~MADist------~ee~~~A~~~G~D 114 (192)
T PF04131_consen 48 VYITPTLKEVDALAEAGADIIALDATDRPRP-ETLEE---LIREIKEK--Y-QLVMADIST------LEEAINAAELGFD 114 (192)
T ss_dssp --BS-SHHHHHHHHHCT-SEEEEE-SSSS-S-S-HHH---HHHHHHHC--T-SEEEEE-SS------HHHHHHHHHTT-S
T ss_pred eEECCCHHHHHHHHHcCCCEEEEecCCCCCC-cCHHH---HHHHHHHh--C-cEEeeecCC------HHHHHHHHHcCCC
Confidence 3333446778889999999999999888877 55554 44444443 2 789998874 4556778889999
Q ss_pred EEEEcCCCCCCCCH--HHHHHHHHHHHhc-CCeEEEeCCCCCCCCCCHHHHHHHhc---CCCeEEEecc
Q 018253 156 AALHINPYYGKTSL--EGLISHFDSVLSM-GPTIIYNVPSRTGQDIPPRVIHTMAQ---SPNLAGVKEC 218 (359)
Q Consensus 156 av~v~pP~y~~~s~--~~l~~yf~~Ia~a-~PiiiYn~P~~tg~~ls~e~l~~La~---~pnivGiK~s 218 (359)
.+--+---|...+. .-=+++.+++.+. .|++.= |.--+|+...+..+ +--|||=..+
T Consensus 115 ~I~TTLsGYT~~t~~~~pD~~lv~~l~~~~~pvIaE------Gri~tpe~a~~al~~GA~aVVVGsAIT 177 (192)
T PF04131_consen 115 IIGTTLSGYTPYTKGDGPDFELVRELVQADVPVIAE------GRIHTPEQAAKALELGAHAVVVGSAIT 177 (192)
T ss_dssp EEE-TTTTSSTTSTTSSHHHHHHHHHHHTTSEEEEE------SS--SHHHHHHHHHTT-SEEEE-HHHH
T ss_pred EEEcccccCCCCCCCCCCCHHHHHHHHhCCCcEeec------CCCCCHHHHHHHHhcCCeEEEECcccC
Confidence 99888665644331 1124455555554 464432 44456666666543 3345554443
No 300
>cd00739 DHPS DHPS subgroup of Pterin binding enzymes. DHPS (dihydropteroate synthase), a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS.
Probab=83.94 E-value=10 Score=35.90 Aligned_cols=119 Identities=12% Similarity=0.257 Sum_probs=65.3
Q ss_pred CceEEeeecCCCCCCC-CCHHHHHHHHHHHHHCCCCEEEEccCccCc--CCCCHHHHHHHHHHHHHhhCC--CcEEEEec
Q 018253 60 LRLITAIKTPYLPDGR-FDLEAYDDLVNMQIVNGAEGMIVGGTTGEG--QLMSWDEHIMLIGHTVNCFGA--SVKVIGNT 134 (359)
Q Consensus 60 ~Gi~~al~TPF~~dg~-ID~~~l~~li~~li~~Gv~Gl~v~GstGE~--~~LT~~Er~~li~~~v~~~~g--rvpViagv 134 (359)
.||+-..+=-|.+.|. +|++...+++..+++.|++-|=++|..... ...+.+|-.+-+..+++.... ++|| .+
T Consensus 4 mgIlN~tpdSF~dg~~~~~~~~~~~~a~~~~~~GAdiIDIG~~st~p~~~~i~~~~E~~rl~~~v~~i~~~~~~pl--SI 81 (257)
T cd00739 4 MGILNVTPDSFSDGGRFLSLDKAVAHAEKMIAEGADIIDIGGESTRPGADPVSVEEELERVIPVLEALRGELDVLI--SV 81 (257)
T ss_pred EEEEcCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCcCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCcE--EE
Confidence 4555544445766665 899999999999999999999988633321 233444433333333444433 4554 45
Q ss_pred CCCCHHHHHHHHHHHHhCCCCEEEEcCCCCCCCCHHHHHHHHHHHHhc-CCeEEEeC
Q 018253 135 GSNSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSM-GPTIIYNV 190 (359)
Q Consensus 135 g~~st~~ai~la~~a~~~Gadav~v~pP~y~~~s~~~l~~yf~~Ia~a-~PiiiYn~ 190 (359)
-+.+.+. ++.|.+.|++-+--+. ....+ +++ +.-+++. .|+++-+.
T Consensus 82 DT~~~~v----~e~al~~G~~iINdis--g~~~~-~~~---~~l~~~~~~~vV~m~~ 128 (257)
T cd00739 82 DTFRAEV----ARAALEAGADIINDVS--GGSDD-PAM---LEVAAEYGAPLVLMHM 128 (257)
T ss_pred eCCCHHH----HHHHHHhCCCEEEeCC--CCCCC-hHH---HHHHHHcCCCEEEECC
Confidence 4444433 3333444777554332 11112 233 3444443 67776543
No 301
>PRK09875 putative hydrolase; Provisional
Probab=83.86 E-value=43 Score=32.38 Aligned_cols=76 Identities=9% Similarity=0.063 Sum_probs=37.9
Q ss_pred CCHHHHHHHHHHHHHhhCCCcEEEEecCCCCHHHHHHHHHHHHhCCC--CEEEEcCCCCCCCCHHHHHHHHHHHHhcCCe
Q 018253 108 MSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGM--HAALHINPYYGKTSLEGLISHFDSVLSMGPT 185 (359)
Q Consensus 108 LT~~Er~~li~~~v~~~~grvpViagvg~~st~~ai~la~~a~~~Ga--dav~v~pP~y~~~s~~~l~~yf~~Ia~a~Pi 185 (359)
+|..|++-+-..+..+..-.+||+++++.. + ...++.+.+++.|+ +.+++.-+-.. .+ .+|.+++++..=.
T Consensus 133 it~~E~kvl~Aaa~a~~~TG~pi~~Ht~~~-~-~g~e~l~il~e~Gvd~~rvvi~H~d~~-~d----~~~~~~l~~~G~~ 205 (292)
T PRK09875 133 ITPLEEKVFIAAALAHNQTGRPISTHTSFS-T-MGLEQLALLQAHGVDLSRVTVGHCDLK-DN----LDNILKMIDLGAY 205 (292)
T ss_pred CCHHHHHHHHHHHHHHHHHCCcEEEcCCCc-c-chHHHHHHHHHcCcCcceEEEeCCCCC-CC----HHHHHHHHHcCCE
Confidence 666666444433333344456666665432 1 45555555666666 45555433311 22 3455556655444
Q ss_pred EEEeC
Q 018253 186 IIYNV 190 (359)
Q Consensus 186 iiYn~ 190 (359)
+=|+.
T Consensus 206 l~fD~ 210 (292)
T PRK09875 206 VQFDT 210 (292)
T ss_pred EEecc
Confidence 44543
No 302
>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage. Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to
Probab=83.83 E-value=21 Score=33.44 Aligned_cols=91 Identities=13% Similarity=0.181 Sum_probs=68.0
Q ss_pred HCCCCEEEEccCccC-------cCCCCHHHHHHHHHHHHHhhCCCcEEEEe--cCCCCHHHHHHHHHHHHhCCCCEEEEc
Q 018253 90 VNGAEGMIVGGTTGE-------GQLMSWDEHIMLIGHTVNCFGASVKVIGN--TGSNSTREAIHATEQGFAVGMHAALHI 160 (359)
Q Consensus 90 ~~Gv~Gl~v~GstGE-------~~~LT~~Er~~li~~~v~~~~grvpViag--vg~~st~~ai~la~~a~~~Gadav~v~ 160 (359)
+.|.+.+++.|+..= .-.+|.+|....++.+...+ .+||++- .|..+..++.+.+++..+.|++++.+-
T Consensus 27 ~~G~~ai~~s~~~~~~s~G~pD~~~~~~~e~~~~~~~I~~~~--~~Pv~~D~~~G~g~~~~~~~~v~~~~~~G~~gv~iE 104 (243)
T cd00377 27 RAGFKAIYTSGAGVAASLGLPDGGLLTLDEVLAAVRRIARAV--DLPVIADADTGYGNALNVARTVRELEEAGAAGIHIE 104 (243)
T ss_pred HcCCCEEEeccHHHHHhcCCCCCCcCCHHHHHHHHHHHHhhc--cCCEEEEcCCCCCCHHHHHHHHHHHHHcCCEEEEEe
Confidence 469999999885432 34678899999998888766 6799884 344477899999999999999999992
Q ss_pred CCCC----------CCCCHHHHHHHHHHHHhc
Q 018253 161 NPYY----------GKTSLEGLISHFDSVLSM 182 (359)
Q Consensus 161 pP~y----------~~~s~~~l~~yf~~Ia~a 182 (359)
--.+ ...+.++..+-.+.+.++
T Consensus 105 D~~~~k~~g~~~~~~~~~~ee~~~ki~aa~~a 136 (243)
T cd00377 105 DQVGPKKCGHHGGKVLVPIEEFVAKIKAARDA 136 (243)
T ss_pred cCCCCccccCCCCCeecCHHHHHHHHHHHHHH
Confidence 2111 224778888888877764
No 303
>PF03060 NMO: Nitronate monooxygenase; InterPro: IPR004136 2-Nitropropane dioxygenase (1.13.11.32 from EC) catalyses the oxidation of nitroalkanes into their corresponding carbonyl compounds and nitrite using eithr FAD or FMN as a cofactor []. This entry also includes fatty acid synthase subunit beta (2.3.1.86 from EC), which catalyses the formation of long- chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH. The beta subunit contains domains for: [acyl-carrier protein] acetyltransferase and malonyltransferase, S-acyl fatty acid synthase thioesterase, enoyl-[acyl-carrier protein] reductase, and 3-hydroxypalmitoyl-[acyl-carrier protein] dehydratase. ; GO: 0018580 nitronate monooxygenase activity, 0055114 oxidation-reduction process; PDB: 2Z6I_B 2Z6J_B 3BW2_A 3BW3_A 3BW4_A 2GJL_A 2GJN_A 3BO9_A.
Probab=83.62 E-value=3.6 Score=40.33 Aligned_cols=119 Identities=13% Similarity=0.197 Sum_probs=65.5
Q ss_pred HHHHHHHHCCCCEEEEccCccCcCCC-CHHHHHHHHHHHHHhhCCCcEEEEecCCCCHHHHHHHHHHHHhCCCCEEEEcC
Q 018253 83 DLVNMQIVNGAEGMIVGGTTGEGQLM-SWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHIN 161 (359)
Q Consensus 83 ~li~~li~~Gv~Gl~v~GstGE~~~L-T~~Er~~li~~~v~~~~grvpViagvg~~st~~ai~la~~a~~~Gadav~v~p 161 (359)
++....++.|+|+|++-|.-+=++.- +.+--..|+..+.+.++ +|||+ .|+-...+.+ .+|..+|||+|++-+
T Consensus 147 ~~A~~a~~~G~D~iv~qG~eAGGH~g~~~~~~~~L~~~v~~~~~--iPVia-AGGI~dg~~i---aaal~lGA~gV~~GT 220 (330)
T PF03060_consen 147 REARKAAKAGADAIVAQGPEAGGHRGFEVGSTFSLLPQVRDAVD--IPVIA-AGGIADGRGI---AAALALGADGVQMGT 220 (330)
T ss_dssp HHHHHHHHTT-SEEEEE-TTSSEE---SSG-HHHHHHHHHHH-S--S-EEE-ESS--SHHHH---HHHHHCT-SEEEESH
T ss_pred HHHHHhhhcCCCEEEEeccccCCCCCccccceeeHHHHHhhhcC--CcEEE-ecCcCCHHHH---HHHHHcCCCEeecCC
Confidence 45667789999999998765444444 22246777777777764 89998 3333334333 366779999999998
Q ss_pred CCCCCCCHHHHHHHHHHH-Hhc--CCeEEEeCCC-CCCCCCCHHHHHHHhc
Q 018253 162 PYYGKTSLEGLISHFDSV-LSM--GPTIIYNVPS-RTGQDIPPRVIHTMAQ 208 (359)
Q Consensus 162 P~y~~~s~~~l~~yf~~I-a~a--~PiiiYn~P~-~tg~~ls~e~l~~La~ 208 (359)
.+.... +..+-+.|++. .++ ..+++...+. +....+..++..++.+
T Consensus 221 rFl~t~-Es~~~~~~K~~l~~a~~~dtv~t~~~~G~~~R~l~n~~~~~~~~ 270 (330)
T PF03060_consen 221 RFLATE-ESGASDAYKQALVDATEEDTVLTRSFSGRPARVLRNPFTEEWEE 270 (330)
T ss_dssp HHHTST-TS-S-HHHHHHHHHGGTT-EEEESTTTTS-EEEE-SHHHHHHHH
T ss_pred eEEecc-cccChHHHHHHHHhCCCCCEEEEeecccchhhhhCcHHHHHHHh
Confidence 776432 33344445544 344 4677666542 3334456666666653
No 304
>TIGR00742 yjbN tRNA dihydrouridine synthase A. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=83.62 E-value=45 Score=32.62 Aligned_cols=86 Identities=10% Similarity=-0.020 Sum_probs=62.1
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEccC----------ccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEec--C--C-CCH
Q 018253 75 RFDLEAYDDLVNMQIVNGAEGMIVGGT----------TGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNT--G--S-NST 139 (359)
Q Consensus 75 ~ID~~~l~~li~~li~~Gv~Gl~v~Gs----------tGE~~~LT~~Er~~li~~~v~~~~grvpViagv--g--~-~st 139 (359)
.-|.+.+.+.++.+.+.|+++|=++.+ .|-...-..+.-.++++.+.+.++ +||.+=+ + . .+.
T Consensus 63 g~~p~~~~~aA~~~~~~g~d~IDlN~GCP~~~v~~~g~Gs~Ll~~p~~~~~iv~av~~~~~--~PVsvKiR~g~~~~~~~ 140 (318)
T TIGR00742 63 GSDPNDLAKCAKIAEKRGYDEINLNVGCPSDRVQNGNFGACLMGNADLVADCVKAMQEAVN--IPVTVKHRIGIDPLDSY 140 (318)
T ss_pred cCCHHHHHHHHHHHHhCCCCEEEEECCCCHHHhCCCCeehHhhcCHHHHHHHHHHHHHHhC--CCeEEEEecCCCCcchH
Confidence 457788999998888889998866543 244444556666778888777663 5666533 2 2 245
Q ss_pred HHHHHHHHHHHhCCCCEEEEcCC
Q 018253 140 REAIHATEQGFAVGMHAALHINP 162 (359)
Q Consensus 140 ~~ai~la~~a~~~Gadav~v~pP 162 (359)
++++++++.+++.|+|++-+.+=
T Consensus 141 ~~~~~~~~~l~~~G~~~itvHgR 163 (318)
T TIGR00742 141 EFLCDFVEIVSGKGCQNFIVHAR 163 (318)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCC
Confidence 78999999999999999877654
No 305
>PRK05660 HemN family oxidoreductase; Provisional
Probab=83.60 E-value=19 Score=35.91 Aligned_cols=100 Identities=8% Similarity=0.070 Sum_probs=67.5
Q ss_pred CCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCC--CcEEEEecCCCCHHHHHHHHHHHHhCCCCEEEEcCCCCCC--
Q 018253 91 NGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGA--SVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYYGK-- 166 (359)
Q Consensus 91 ~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~g--rvpViagvg~~st~~ai~la~~a~~~Gadav~v~pP~y~~-- 166 (359)
.+++-|+++| |+...|+.++-.++++.+.+..+- ...+-+-+.-.+ -+-+..+..+++|++.+.+-.-.+..
T Consensus 57 ~~v~ti~~GG--GtPs~l~~~~l~~ll~~l~~~~~~~~~~eit~e~np~~--l~~e~l~~Lk~~Gv~risiGvqS~~~~~ 132 (378)
T PRK05660 57 REVHSIFIGG--GTPSLFSAEAIQRLLDGVRARLPFAPDAEITMEANPGT--VEADRFVGYQRAGVNRISIGVQSFSEEK 132 (378)
T ss_pred CceeEEEeCC--CccccCCHHHHHHHHHHHHHhCCCCCCcEEEEEeCcCc--CCHHHHHHHHHcCCCEEEeccCcCCHHH
Confidence 4688888877 678899999999999999886532 222322222112 23377777888999999988765532
Q ss_pred -------CCHHHHHHHHHHHHhc-C-Ce---EEEeCCCCC
Q 018253 167 -------TSLEGLISHFDSVLSM-G-PT---IIYNVPSRT 194 (359)
Q Consensus 167 -------~s~~~l~~yf~~Ia~a-~-Pi---iiYn~P~~t 194 (359)
.+.+++.+-++.+.++ . ++ ++|..|..|
T Consensus 133 L~~l~r~~~~~~~~~ai~~~~~~G~~~v~~dli~Glpgqt 172 (378)
T PRK05660 133 LKRLGRIHGPDEAKRAAKLAQGLGLRSFNLDLMHGLPDQS 172 (378)
T ss_pred HHHhCCCCCHHHHHHHHHHHHHcCCCeEEEEeecCCCCCC
Confidence 4667777777777665 3 33 678888643
No 306
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=83.58 E-value=23 Score=37.75 Aligned_cols=80 Identities=11% Similarity=0.090 Sum_probs=68.9
Q ss_pred CHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCCCHHHHHHHHHHHHhCCCCE
Q 018253 77 DLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHA 156 (359)
Q Consensus 77 D~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~st~~ai~la~~a~~~Gada 156 (359)
+.+-+.++++.+.+.|++.|.+.-|.|= |++++-.++++.+.+.. ++||=+++ +++..-++..+-.|.++|||.
T Consensus 153 ~~~~~~~~a~~l~~~Gad~i~i~Dt~G~---l~P~~~~~lv~~lk~~~--~~pi~~H~-Hnt~GlA~An~laAieAGa~~ 226 (593)
T PRK14040 153 TLQTWVDLAKQLEDMGVDSLCIKDMAGL---LKPYAAYELVSRIKKRV--DVPLHLHC-HATTGLSTATLLKAIEAGIDG 226 (593)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECCCCCC---cCHHHHHHHHHHHHHhc--CCeEEEEE-CCCCchHHHHHHHHHHcCCCE
Confidence 6888999999999999999999999995 89999999999998877 47876665 567888999999999999998
Q ss_pred EEEcCC
Q 018253 157 ALHINP 162 (359)
Q Consensus 157 v~v~pP 162 (359)
+=..--
T Consensus 227 vD~ai~ 232 (593)
T PRK14040 227 VDTAIS 232 (593)
T ss_pred EEeccc
Confidence 865543
No 307
>PRK08446 coproporphyrinogen III oxidase; Provisional
Probab=83.51 E-value=25 Score=34.64 Aligned_cols=112 Identities=13% Similarity=0.141 Sum_probs=67.2
Q ss_pred HHHHHHHHHHHHH----CCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCCCHHHHHHHHHHHHhCC
Q 018253 78 LEAYDDLVNMQIV----NGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVG 153 (359)
Q Consensus 78 ~~~l~~li~~li~----~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~st~~ai~la~~a~~~G 153 (359)
.+++.+-++...+ .+++.|+++| |+...|+.++..++++.+.+.......+-+-+...+. +-+..+..+++|
T Consensus 33 ~~~L~~Ei~~~~~~~~~~~v~~iyfGG--GTPs~l~~~~l~~ll~~i~~~~~~~~eitiE~nP~~~--~~e~l~~l~~~G 108 (350)
T PRK08446 33 MQALCLDLKFELEQFTDEKIESVFIGG--GTPSTVSAKFYEPIFEIISPYLSKDCEITTEANPNSA--TKAWLKGMKNLG 108 (350)
T ss_pred HHHHHHHHHHHHhhccCCceeEEEECC--CccccCCHHHHHHHHHHHHHhcCCCceEEEEeCCCCC--CHHHHHHHHHcC
Confidence 3444444443332 2677777766 5577788888888888887764444444333322222 235666667778
Q ss_pred CCEEEEcCCCCC--------C-CCHHHHHHHHHHHHhc-CC-e---EEEeCCCC
Q 018253 154 MHAALHINPYYG--------K-TSLEGLISHFDSVLSM-GP-T---IIYNVPSR 193 (359)
Q Consensus 154 adav~v~pP~y~--------~-~s~~~l~~yf~~Ia~a-~P-i---iiYn~P~~ 193 (359)
++.+.+-.-.+. + .+.+++.+-++.+.++ .+ | ++|..|.-
T Consensus 109 vnRiSiGvQS~~~~~L~~lgR~~~~~~~~~ai~~lr~~g~~~v~iDli~GlPgq 162 (350)
T PRK08446 109 VNRISFGVQSFNEDKLKFLGRIHSQKQIIKAIENAKKAGFENISIDLIYDTPLD 162 (350)
T ss_pred CCEEEEecccCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCCEEEEEeecCCCCC
Confidence 888877665442 2 4566777777666655 23 3 67777753
No 308
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A ....
Probab=83.46 E-value=6.4 Score=35.95 Aligned_cols=73 Identities=15% Similarity=0.183 Sum_probs=52.3
Q ss_pred HHHHHHHHHHhhCCCcEEEEecCCCCHHHHHHHHHHHHhCCCCEEEEcCCCCCCCCHHHHHHHHHHHHhc-CCeEEEeCC
Q 018253 113 HIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSM-GPTIIYNVP 191 (359)
Q Consensus 113 r~~li~~~v~~~~grvpViagvg~~st~~ai~la~~a~~~Gadav~v~pP~y~~~s~~~l~~yf~~Ia~a-~PiiiYn~P 191 (359)
-.+-++.+.+..+-.+-++ +-...+.++.++.++.+.+.|+|++++.|+.. +.+...++.+.++ .|++.+|.+
T Consensus 16 ~~~g~~~~a~~~g~~~~~~-~~~~~d~~~q~~~i~~~i~~~~d~Iiv~~~~~-----~~~~~~l~~~~~~gIpvv~~d~~ 89 (257)
T PF13407_consen 16 VIKGAKAAAKELGYEVEIV-FDAQNDPEEQIEQIEQAISQGVDGIIVSPVDP-----DSLAPFLEKAKAAGIPVVTVDSD 89 (257)
T ss_dssp HHHHHHHHHHHHTCEEEEE-EESTTTHHHHHHHHHHHHHTTESEEEEESSST-----TTTHHHHHHHHHTTSEEEEESST
T ss_pred HHHHHHHHHHHcCCEEEEe-CCCCCCHHHHHHHHHHHHHhcCCEEEecCCCH-----HHHHHHHHHHhhcCceEEEEecc
Confidence 3344444455554443333 67778899999999999999999999886654 3344666777777 899999987
No 309
>cd06267 PBP1_LacI_sugar_binding_like Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. In most cases, ligands are monosaccharide including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor. In this case, the domain sugar binding changes the DNA binding activity of the repressor domain.
Probab=83.41 E-value=4.5 Score=36.39 Aligned_cols=131 Identities=11% Similarity=0.122 Sum_probs=70.4
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEe-----------cCCCCHHHHHH
Q 018253 76 FDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGN-----------TGSNSTREAIH 144 (359)
Q Consensus 76 ID~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViag-----------vg~~st~~ai~ 144 (359)
-|.+.....++.++..|++|+++.+...+.. + ++.+. ..++||+.- ++.........
T Consensus 39 ~~~~~~~~~~~~~~~~~~d~iii~~~~~~~~------~---~~~~~---~~~ipvv~~~~~~~~~~~~~v~~d~~~~g~~ 106 (264)
T cd06267 39 EDPEKEREALELLLSRRVDGIILAPSRLDDE------L---LEELA---ALGIPVVLVDRPLDGLGVDSVGIDNRAGAYL 106 (264)
T ss_pred CCHHHHHHHHHHHHHcCcCEEEEecCCcchH------H---HHHHH---HcCCCEEEecccccCCCCCEEeeccHHHHHH
Confidence 4467888899999999999999988775421 1 22221 224565442 23334455555
Q ss_pred HHHHHHhCCCCEEEEcCCCCCCCCHHHHHHHHHHHHhc-C-Ce-EEEeCCCCCCCCCCHHHHHHHh-cCCCeEEEecc
Q 018253 145 ATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSM-G-PT-IIYNVPSRTGQDIPPRVIHTMA-QSPNLAGVKEC 218 (359)
Q Consensus 145 la~~a~~~Gadav~v~pP~y~~~s~~~l~~yf~~Ia~a-~-Pi-iiYn~P~~tg~~ls~e~l~~La-~~pnivGiK~s 218 (359)
.+++..+.|..-+.++.+.-.......-.+-|++..+. . ++ ..+..+......-....+.++. ++|++.++=-.
T Consensus 107 ~~~~l~~~g~~~i~~i~~~~~~~~~~~r~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~ 184 (264)
T cd06267 107 AVEHLIELGHRRIAFIGGPPDLSTARERLEGYREALEEAGIPLDEELIVEGDFSEESGYEAARELLASGERPTAIFAA 184 (264)
T ss_pred HHHHHHHCCCceEEEecCCCccchHHHHHHHHHHHHHHcCCCCCcceEEecccchhhHHHHHHHHHhcCCCCcEEEEc
Confidence 66888888887777765433322333334444444432 2 22 1111111112222234555555 67776666644
No 310
>PLN03228 methylthioalkylmalate synthase; Provisional
Probab=83.31 E-value=8.2 Score=40.27 Aligned_cols=133 Identities=20% Similarity=0.153 Sum_probs=91.7
Q ss_pred CCCCCHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCC--CcEEEEecCCCCHHHHHHHHHHHH
Q 018253 73 DGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGA--SVKVIGNTGSNSTREAIHATEQGF 150 (359)
Q Consensus 73 dg~ID~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~g--rvpViagvg~~st~~ai~la~~a~ 150 (359)
.++.|.+-+.++++...+.|++.|.+.-|.|= +++++-.++++.+.+.+++ ++||=++ ++++..-++.-+-.|.
T Consensus 233 a~Rtd~efl~~~~~~a~~~Gad~I~l~DTvG~---~tP~~v~~lV~~l~~~~~~~~~i~I~~H-~HND~GlAvANslaAi 308 (503)
T PLN03228 233 GGRSDKEFLCKILGEAIKAGATSVGIADTVGI---NMPHEFGELVTYVKANTPGIDDIVFSVH-CHNDLGLATANTIAGI 308 (503)
T ss_pred ccccCHHHHHHHHHHHHhcCCCEEEEecCCCC---CCHHHHHHHHHHHHHHhccccCceeEec-ccCCcChHHHHHHHHH
Confidence 46799999999999999999999999999994 7899999999988887653 3555444 4678888999999999
Q ss_pred hCCCCEEEEcCCCCC----CCCHHHHHHHHHHHHhcCCeEEEeCCCCCCCCCCHHHHHHHhc-CCCeEEEe
Q 018253 151 AVGMHAALHINPYYG----KTSLEGLISHFDSVLSMGPTIIYNVPSRTGQDIPPRVIHTMAQ-SPNLAGVK 216 (359)
Q Consensus 151 ~~Gadav~v~pP~y~----~~s~~~l~~yf~~Ia~a~PiiiYn~P~~tg~~ls~e~l~~La~-~pnivGiK 216 (359)
++||+.+-..---.. ..+-++++.+.+..- ..+++.. .++ +..+.+.++++ ...+.|+.
T Consensus 309 ~aGa~~Vd~Tv~GiGERaGNa~lEevv~~L~~~~---~~~~~g~--~t~--iDl~~L~~ls~~V~~~~g~~ 372 (503)
T PLN03228 309 CAGARQVEVTINGIGERSGNASLEEVVMALKCRG---AYLMNGV--YTG--IDTRQIMATSKMVQEYTGMY 372 (503)
T ss_pred HhCCCEEEEeccccccccCCccHHHHHHHHHhcc---cccccCC--CCC--cCHHHHHHHHHHHHHHhCCC
Confidence 999999976533222 244566666554321 2222222 234 44556666553 33344443
No 311
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=83.25 E-value=6.2 Score=36.51 Aligned_cols=86 Identities=16% Similarity=0.123 Sum_probs=56.3
Q ss_pred HHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCCCHHHHHHHHHHHHhCCCCEEEEcC
Q 018253 82 DDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHIN 161 (359)
Q Consensus 82 ~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~st~~ai~la~~a~~~Gadav~v~p 161 (359)
..+++.+.+.|++.+++.+.+-++.. +. .-.++++.+++.+ .+||+++=|-.+.++..+ +.+.|++++++..
T Consensus 152 ~~~~~~~~~~G~~~i~~~~~~~~g~~-~g-~~~~~i~~i~~~~--~iPvia~GGI~~~~di~~----~~~~Ga~gv~vgs 223 (241)
T PRK13585 152 VEAAKRFEELGAGSILFTNVDVEGLL-EG-VNTEPVKELVDSV--DIPVIASGGVTTLDDLRA----LKEAGAAGVVVGS 223 (241)
T ss_pred HHHHHHHHHcCCCEEEEEeecCCCCc-CC-CCHHHHHHHHHhC--CCCEEEeCCCCCHHHHHH----HHHcCCCEEEEEH
Confidence 44555556899999999887544332 21 2344566666665 589998776666777654 3558999999987
Q ss_pred CCCCC-CCHHHHHHH
Q 018253 162 PYYGK-TSLEGLISH 175 (359)
Q Consensus 162 P~y~~-~s~~~l~~y 175 (359)
-.|.. .+-+++..+
T Consensus 224 a~~~~~~~~~~~~~~ 238 (241)
T PRK13585 224 ALYKGKFTLEEAIEA 238 (241)
T ss_pred HHhcCCcCHHHHHHH
Confidence 76644 344554443
No 312
>COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion]
Probab=83.19 E-value=7.4 Score=39.29 Aligned_cols=94 Identities=19% Similarity=0.201 Sum_probs=70.7
Q ss_pred CceEEeeecCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCCCH
Q 018253 60 LRLITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNST 139 (359)
Q Consensus 60 ~Gi~~al~TPF~~dg~ID~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~st 139 (359)
.|.+.-..+|. =+.+.+.++.+.|.+.|+|.|.+=-.+| .||+.+--++++...+..+ +||-+++-+. +
T Consensus 142 q~~i~YT~sPv-----Ht~e~yv~~akel~~~g~DSIciKDmaG---lltP~~ayelVk~iK~~~~--~pv~lHtH~T-s 210 (472)
T COG5016 142 QGTISYTTSPV-----HTLEYYVELAKELLEMGVDSICIKDMAG---LLTPYEAYELVKAIKKELP--VPVELHTHAT-S 210 (472)
T ss_pred EEEEEeccCCc-----ccHHHHHHHHHHHHHcCCCEEEeecccc---cCChHHHHHHHHHHHHhcC--CeeEEecccc-c
Confidence 44555556664 5788999999999999999999988888 5899999999999998885 8998887542 2
Q ss_pred HHHHHHHHHHHhCCCCEE-EEcCCCC
Q 018253 140 REAIHATEQGFAVGMHAA-LHINPYY 164 (359)
Q Consensus 140 ~~ai~la~~a~~~Gadav-~v~pP~y 164 (359)
--+..---.|.++|+|.+ ..+.|.-
T Consensus 211 G~a~m~ylkAvEAGvD~iDTAisp~S 236 (472)
T COG5016 211 GMAEMTYLKAVEAGVDGIDTAISPLS 236 (472)
T ss_pred chHHHHHHHHHHhCcchhhhhhcccc
Confidence 333333445678999987 4444543
No 313
>TIGR00973 leuA_bact 2-isopropylmalate synthase, bacterial type. A larger family of homologous proteins includes homocitrate synthase, distinct lineages of 2-isopropylmalate synthase, several distinct, uncharacterized, orthologous sets in the Archaea, and other related enzymes. This model describes a family of 2-isopropylmalate synthases found primarily in Bacteria. The homologous families in the Archaea may represent isozymes and/or related enzymes.
Probab=83.05 E-value=8.4 Score=40.08 Aligned_cols=102 Identities=17% Similarity=0.087 Sum_probs=80.0
Q ss_pred CCCCCHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCC--cEEEEecCCCCHHHHHHHHHHHH
Q 018253 73 DGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGAS--VKVIGNTGSNSTREAIHATEQGF 150 (359)
Q Consensus 73 dg~ID~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~gr--vpViagvg~~st~~ai~la~~a~ 150 (359)
-++.|.+-+.++++...+.|++-|.++-|.|= +++++-.++++.+.+.++.. +++=++ .+++..-++.-+..|.
T Consensus 140 ~~r~d~~~l~~~~~~~~~~Ga~~i~l~DTvG~---~~P~~~~~~i~~l~~~~~~~~~v~l~~H-~HND~GlAvANalaAv 215 (494)
T TIGR00973 140 AGRTEIPFLARIVEAAINAGATTINIPDTVGY---ALPAEYGNLIKGLRENVPNIDKAILSVH-CHNDLGLAVANSLAAV 215 (494)
T ss_pred CCCCCHHHHHHHHHHHHHcCCCEEEeCCCCCC---CCHHHHHHHHHHHHHhhccccCceEEEE-eCCCCChHHHHHHHHH
Confidence 45689999999999999999999999999995 78999999999998877653 444433 4678888999999999
Q ss_pred hCCCCEEEEcCCCC----CCCCHHHHHHHHHH
Q 018253 151 AVGMHAALHINPYY----GKTSLEGLISHFDS 178 (359)
Q Consensus 151 ~~Gadav~v~pP~y----~~~s~~~l~~yf~~ 178 (359)
++||+.+-..-=-+ ...+-+++..+++.
T Consensus 216 ~aGa~~vd~tv~GlGERaGNa~le~vv~~L~~ 247 (494)
T TIGR00973 216 QNGARQVECTINGIGERAGNAALEEVVMALKV 247 (494)
T ss_pred HhCCCEEEEEeecccccccCccHHHHHHHHHH
Confidence 99999886654333 22455666666654
No 314
>PRK09389 (R)-citramalate synthase; Provisional
Probab=83.02 E-value=9.8 Score=39.53 Aligned_cols=99 Identities=20% Similarity=0.192 Sum_probs=79.5
Q ss_pred CCCCCHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCCCHHHHHHHHHHHHhC
Q 018253 73 DGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAV 152 (359)
Q Consensus 73 dg~ID~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~st~~ai~la~~a~~~ 152 (359)
..+-|.+-+.+.++...+.|++-|.++-|.| .+++.+-.++++.+.+..+ +|+=++ .+++..-++..+..|.++
T Consensus 137 ~~r~~~~~l~~~~~~~~~~Ga~~i~l~DTvG---~~~P~~~~~lv~~l~~~~~--v~l~~H-~HND~GlAvANalaAv~a 210 (488)
T PRK09389 137 ASRADLDFLKELYKAGIEAGADRICFCDTVG---ILTPEKTYELFKRLSELVK--GPVSIH-CHNDFGLAVANTLAALAA 210 (488)
T ss_pred CCCCCHHHHHHHHHHHHhCCCCEEEEecCCC---CcCHHHHHHHHHHHHhhcC--CeEEEE-ecCCccHHHHHHHHHHHc
Confidence 4678999999999999999999999999999 7899999999988877542 565444 467888999999999999
Q ss_pred CCCEEEEcCCCCC----CCCHHHHHHHHH
Q 018253 153 GMHAALHINPYYG----KTSLEGLISHFD 177 (359)
Q Consensus 153 Gadav~v~pP~y~----~~s~~~l~~yf~ 177 (359)
||+.+-..---+. ..+-++++.+.+
T Consensus 211 Ga~~Vd~Ti~GiGERaGNa~lE~lv~~L~ 239 (488)
T PRK09389 211 GADQVHVTINGIGERAGNASLEEVVMALK 239 (488)
T ss_pred CCCEEEEEcccccccccCccHHHHHHHHH
Confidence 9999877654443 245677776664
No 315
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=83.02 E-value=21 Score=35.21 Aligned_cols=45 Identities=7% Similarity=0.042 Sum_probs=22.7
Q ss_pred CCHHHHHHHHHHHHhCCCCEEEEcCCCCCCCCHHHHHHHHHHHHhc
Q 018253 137 NSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSM 182 (359)
Q Consensus 137 ~st~~ai~la~~a~~~Gadav~v~pP~y~~~s~~~l~~yf~~Ia~a 182 (359)
.+.++.+++++.+.+.|+|.+-+.- .+...+++++.++++.+.+.
T Consensus 141 ~~~e~l~~~a~~~~~~Ga~~i~i~D-T~G~~~P~~v~~~v~~l~~~ 185 (337)
T PRK08195 141 APPEKLAEQAKLMESYGAQCVYVVD-SAGALLPEDVRDRVRALRAA 185 (337)
T ss_pred CCHHHHHHHHHHHHhCCCCEEEeCC-CCCCCCHHHHHHHHHHHHHh
Confidence 3455555555555555555544332 23334455555555555543
No 316
>PRK13361 molybdenum cofactor biosynthesis protein A; Provisional
Probab=82.97 E-value=10 Score=37.04 Aligned_cols=101 Identities=16% Similarity=0.120 Sum_probs=64.5
Q ss_pred CCCCCHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCc-EEEEecCCCCHHHHHHHHHHHHh
Q 018253 73 DGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASV-KVIGNTGSNSTREAIHATEQGFA 151 (359)
Q Consensus 73 dg~ID~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grv-pViagvg~~st~~ai~la~~a~~ 151 (359)
...++.+.+.++++.+.+.|+..|.+.| ||- .| ..+-.++++.+.+. .+ + .+.+.+.+.... +.++...+
T Consensus 42 ~~~ls~eei~~li~~~~~~Gv~~I~~tG--GEP-ll-r~dl~~li~~i~~~-~~-l~~i~itTNG~ll~---~~~~~L~~ 112 (329)
T PRK13361 42 DQVLSLEELAWLAQAFTELGVRKIRLTG--GEP-LV-RRGCDQLVARLGKL-PG-LEELSLTTNGSRLA---RFAAELAD 112 (329)
T ss_pred cCCCCHHHHHHHHHHHHHCCCCEEEEEC--cCC-Cc-cccHHHHHHHHHhC-CC-CceEEEEeChhHHH---HHHHHHHH
Confidence 4579999999999999999999999987 994 33 34556666665442 22 2 333334332232 56777888
Q ss_pred CCCCEEEEcCCC-----CC----CCCHHHHHHHHHHHHhc
Q 018253 152 VGMHAALHINPY-----YG----KTSLEGLISHFDSVLSM 182 (359)
Q Consensus 152 ~Gadav~v~pP~-----y~----~~s~~~l~~yf~~Ia~a 182 (359)
+|.+.+-+.--. |. ..+-+.+.+-.+.+.+.
T Consensus 113 aGl~~v~ISlDs~~~e~~~~i~~~g~~~~vl~~i~~~~~~ 152 (329)
T PRK13361 113 AGLKRLNISLDTLRPELFAALTRNGRLERVIAGIDAAKAA 152 (329)
T ss_pred cCCCeEEEEeccCCHHHhhhhcCCCCHHHHHHHHHHHHHc
Confidence 999988665422 11 12345666666665554
No 317
>TIGR00977 LeuA_rel 2-isopropylmalate synthase/homocitrate synthase family protein. This model represents uncharacterized proteins related to 2-isopropylmalate synthases and homocitrate synthases but phylogenetically distint. Each species represented in the seed alignment also has a member of a known family of 2-isopropylmalate synthases.
Probab=82.95 E-value=7.5 Score=40.79 Aligned_cols=84 Identities=11% Similarity=-0.019 Sum_probs=71.6
Q ss_pred CCCCHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCCCHHHHHHHHHHHHhCC
Q 018253 74 GRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVG 153 (359)
Q Consensus 74 g~ID~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~st~~ai~la~~a~~~G 153 (359)
.+.|.+-+.+.++..++.|++-+.++-|.| .++++|-.++++.+.+.++ ..++=+ -.+++.--++..+-.|.++|
T Consensus 149 ~r~~~~~l~~~~~~a~~aGad~i~i~DTvG---~~~P~~v~~li~~l~~~~~-~~~i~v-H~HND~GlAvANslaAv~AG 223 (526)
T TIGR00977 149 YKANPEYALATLATAQQAGADWLVLCDTNG---GTLPHEISEITTKVKRSLK-QPQLGI-HAHNDSGTAVANSLLAVEAG 223 (526)
T ss_pred ccCCHHHHHHHHHHHHhCCCCeEEEecCCC---CcCHHHHHHHHHHHHHhCC-CCEEEE-EECCCCChHHHHHHHHHHhC
Confidence 378999999999999999999999999999 8899999999999988765 222333 35788899999999999999
Q ss_pred CCEEEEcCC
Q 018253 154 MHAALHINP 162 (359)
Q Consensus 154 adav~v~pP 162 (359)
|+.+-..-=
T Consensus 224 A~~Vd~Tin 232 (526)
T TIGR00977 224 ATMVQGTIN 232 (526)
T ss_pred CCEEEEecc
Confidence 999877643
No 318
>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.
Probab=82.95 E-value=7.2 Score=38.47 Aligned_cols=83 Identities=12% Similarity=0.113 Sum_probs=58.3
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEE-ccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCCCHHHHHHHHHHHHhCC
Q 018253 75 RFDLEAYDDLVNMQIVNGAEGMIV-GGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVG 153 (359)
Q Consensus 75 ~ID~~~l~~li~~li~~Gv~Gl~v-~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~st~~ai~la~~a~~~G 153 (359)
..+.+....++++|.+.|++-|-+ .|++.+.. ..-...+.+.+.+.+ ++||++ +|..+ .+.++.+.+.|
T Consensus 237 ~~~~ee~~~~~~~l~~~g~d~i~vs~g~~~~~~---~~~~~~~~~~ik~~~--~ipvi~-~G~i~----~~~a~~~l~~g 306 (338)
T cd02933 237 SDPEATFSYLAKELNKRGLAYLHLVEPRVAGNP---EDQPPDFLDFLRKAF--KGPLIA-AGGYD----AESAEAALADG 306 (338)
T ss_pred CCCHHHHHHHHHHHHHcCCcEEEEecCCCCCcc---cccchHHHHHHHHHc--CCCEEE-ECCCC----HHHHHHHHHcC
Confidence 467888899999999999999887 45444322 333455566666655 589876 56654 55566666655
Q ss_pred -CCEEEEcCCCCCCC
Q 018253 154 -MHAALHINPYYGKT 167 (359)
Q Consensus 154 -adav~v~pP~y~~~ 167 (359)
+|.|++.-|....|
T Consensus 307 ~~D~V~~gR~~ladP 321 (338)
T cd02933 307 KADLVAFGRPFIANP 321 (338)
T ss_pred CCCEEEeCHhhhhCc
Confidence 99999998877655
No 319
>PF01180 DHO_dh: Dihydroorotate dehydrogenase; InterPro: IPR012135 Dihydroorotate dehydrogenase (DHOD), also known as dihydroorotate oxidase, catalyses the fourth step in de novo pyrimidine biosynthesis, the stereospecific oxidation of (S)-dihydroorotate to orotate, which is the only redox reaction in this pathway. DHODs can be divided into two mains classes: class 1 cytosolic enzymes found primarily in Gram-positive bacteria, and class 2 membrane-associated enzymes found primarily in eukaryotic mitochondria and Gram-negative bacteria []. The class 1 DHODs can be further divided into subclasses 1A and 1B, which differ in their structural organisation and use of electron acceptors. The 1A enzyme is a homodimer of two PyrD subunits where each subunit forms a TIM barrel fold with a bound FMN cofactor located near the top of the barrel []. Fumarate is the natural electron acceptor for this enzyme. The 1B enzyme, in contrast is a heterotetramer composed of a central, FMN-containing, PyrD homodimer resembling the 1A homodimer, and two additional PyrK subunits which contain FAD and a 2Fe-2S cluster []. These additional groups allow the enzyme to use NAD(+) as its natural electron acceptor. The class 2 membrane-associated enzymes are monomers which have the FMN-containing TIM barrel domain found in the class 1 PyrD subunit, and an additional N-terminal alpha helical domain [, ]. These enzymes use respiratory quinones as the physiological electron acceptor. This entry represents the FMN-binding subunit common to all classes of dihydroorotate dehydrogenase.; GO: 0004152 dihydroorotate dehydrogenase activity, 0006222 UMP biosynthetic process, 0055114 oxidation-reduction process; PDB: 3GYE_A 3GZ3_A 3MHU_B 3MJY_A 3TQ0_A 2B4G_C 1EP3_A 1EP2_A 1EP1_A 3I6R_A ....
Probab=82.92 E-value=2 Score=41.25 Aligned_cols=82 Identities=20% Similarity=0.266 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHHCCCCEEEEccCccCcC---------C-------CC----HHHHHHHHHHHHHhhCCCcEEEEecCCCC
Q 018253 79 EAYDDLVNMQIVNGAEGMIVGGTTGEGQ---------L-------MS----WDEHIMLIGHTVNCFGASVKVIGNTGSNS 138 (359)
Q Consensus 79 ~~l~~li~~li~~Gv~Gl~v~GstGE~~---------~-------LT----~~Er~~li~~~v~~~~grvpViagvg~~s 138 (359)
......+..+.+.|++||...-|++-.. . || ..--.+.+..+.+.+++++|||+.-|=.+
T Consensus 176 ~~~~~~~~~~~~~g~~gi~~~Nt~~~~~~id~~~~~~~~~~~~gGlSG~~i~p~aL~~V~~~~~~~~~~i~Iig~GGI~s 255 (295)
T PF01180_consen 176 IEPFAIAAELAADGADGIVAINTFGQGDAIDLETRRPVLGNGFGGLSGPAIRPIALRWVRELRKALGQDIPIIGVGGIHS 255 (295)
T ss_dssp HHHHHHHHHHHTHTECEEEE---EEEEE-EETTTTEESSSGGEEEEEEGGGHHHHHHHHHHHHHHTTTSSEEEEESS--S
T ss_pred hHHHHHHHHhhccceeEEEEecCccCcccccchhcceeeccccCCcCchhhhhHHHHHHHHHHhccccceEEEEeCCcCC
Confidence 3345555566689999999666554332 1 11 12345667777777877899998777778
Q ss_pred HHHHHHHHHHHHhCCCCEEEEcCCCC
Q 018253 139 TREAIHATEQGFAVGMHAALHINPYY 164 (359)
Q Consensus 139 t~~ai~la~~a~~~Gadav~v~pP~y 164 (359)
.++++++.. +||++|.+..=.+
T Consensus 256 ~~da~e~l~----aGA~~Vqv~Sal~ 277 (295)
T PF01180_consen 256 GEDAIEFLM----AGASAVQVCSALI 277 (295)
T ss_dssp HHHHHHHHH----HTESEEEESHHHH
T ss_pred HHHHHHHHH----hCCCHheechhhh
Confidence 899988776 8999999986653
No 320
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=82.90 E-value=10 Score=35.14 Aligned_cols=79 Identities=10% Similarity=0.047 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCCCHHHHHHHHHHHHhCCCCEEEE
Q 018253 80 AYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALH 159 (359)
Q Consensus 80 ~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~st~~ai~la~~a~~~Gadav~v 159 (359)
....+++++.+.|++.+++...++.... ...-.++++.+.+.+ ++||+++=|-.|.+++.++.+ .|+|++++
T Consensus 28 d~~~~a~~~~~~G~~~i~i~d~~~~~~~--~~~~~~~i~~i~~~~--~~pv~~~GGI~s~~d~~~~l~----~G~~~v~i 99 (243)
T cd04731 28 DPVELAKRYNEQGADELVFLDITASSEG--RETMLDVVERVAEEV--FIPLTVGGGIRSLEDARRLLR----AGADKVSI 99 (243)
T ss_pred CHHHHHHHHHHCCCCEEEEEcCCccccc--CcccHHHHHHHHHhC--CCCEEEeCCCCCHHHHHHHHH----cCCceEEE
Confidence 3445667777889999999988875422 233456777777765 489998777667777655544 69999998
Q ss_pred cCCCCCC
Q 018253 160 INPYYGK 166 (359)
Q Consensus 160 ~pP~y~~ 166 (359)
-...+..
T Consensus 100 g~~~~~~ 106 (243)
T cd04731 100 NSAAVEN 106 (243)
T ss_pred CchhhhC
Confidence 8766643
No 321
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=82.87 E-value=6.7 Score=35.97 Aligned_cols=76 Identities=16% Similarity=0.225 Sum_probs=53.2
Q ss_pred HHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCCCHHHHHHHHHHHHhCC-CCEEEEc
Q 018253 82 DDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVG-MHAALHI 160 (359)
Q Consensus 82 ~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~st~~ai~la~~a~~~G-adav~v~ 160 (359)
..+++.+.+.|++.+++.+.+-+....-. -.++++.+.+.+ .+|||++=|-.+.++..++.+ .| +|++|+.
T Consensus 149 ~e~~~~~~~~g~~~ii~~~~~~~g~~~G~--d~~~i~~l~~~~--~ipvia~GGi~~~~di~~~~~----~g~~~gv~vg 220 (233)
T PRK00748 149 EDLAKRFEDAGVKAIIYTDISRDGTLSGP--NVEATRELAAAV--PIPVIASGGVSSLDDIKALKG----LGAVEGVIVG 220 (233)
T ss_pred HHHHHHHHhcCCCEEEEeeecCcCCcCCC--CHHHHHHHHHhC--CCCEEEeCCCCCHHHHHHHHH----cCCccEEEEE
Confidence 45667777889999999987765554432 245555666655 389999877777777655444 56 9999998
Q ss_pred CCCCC
Q 018253 161 NPYYG 165 (359)
Q Consensus 161 pP~y~ 165 (359)
.-.|.
T Consensus 221 ~a~~~ 225 (233)
T PRK00748 221 RALYE 225 (233)
T ss_pred HHHHc
Confidence 76553
No 322
>TIGR02708 L_lactate_ox L-lactate oxidase. Members of this protein oxidize L-lactate to pyruvate, reducing molecular oxygen to hydrogen peroxide. The enzyme is known in Aerococcus viridans, Streptococcus iniae, and some strains of Streptococcus pyogenes where it appears to contribute to virulence.
Probab=82.86 E-value=55 Score=32.82 Aligned_cols=73 Identities=15% Similarity=0.201 Sum_probs=49.7
Q ss_pred CHHHHHHHHHHHHHCCCCEEEEccCc-------------------------------c---------CcCCCCHHHHHHH
Q 018253 77 DLEAYDDLVNMQIVNGAEGMIVGGTT-------------------------------G---------EGQLMSWDEHIML 116 (359)
Q Consensus 77 D~~~l~~li~~li~~Gv~Gl~v~Gst-------------------------------G---------E~~~LT~~Er~~l 116 (359)
|.+..++++++-.++|..+|++.--+ + ....+|++.
T Consensus 144 dr~~~~~li~RA~~aG~~alvlTvD~p~~g~R~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~---- 219 (367)
T TIGR02708 144 DDGINRDIMDRVKADGAKAIVLTADATVGGNREVDVRNGFVFPVGMPIVQEYLPTGAGKSMDNVYKSAKQKLSPRD---- 219 (367)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEecCCCCCCcchhhhhcCCCCCCccchhhhhcccCCccchhhhccccCCCCCHHH----
Confidence 45677899999999999998873210 0 113466644
Q ss_pred HHHHHHhhCCCcEEEE-ecCCCCHHHHHHHHHHHHhCCCCEEEEcC
Q 018253 117 IGHTVNCFGASVKVIG-NTGSNSTREAIHATEQGFAVGMHAALHIN 161 (359)
Q Consensus 117 i~~~v~~~~grvpVia-gvg~~st~~ai~la~~a~~~Gadav~v~p 161 (359)
++.+++.+ ++||++ |++. .+-++.+.++|+|++.+..
T Consensus 220 i~~l~~~~--~~PvivKGv~~------~eda~~a~~~Gvd~I~VS~ 257 (367)
T TIGR02708 220 IEEIAGYS--GLPVYVKGPQC------PEDADRALKAGASGIWVTN 257 (367)
T ss_pred HHHHHHhc--CCCEEEeCCCC------HHHHHHHHHcCcCEEEECC
Confidence 34444444 478888 5553 6677888899999998875
No 323
>PRK09250 fructose-bisphosphate aldolase; Provisional
Probab=82.83 E-value=12 Score=37.12 Aligned_cols=103 Identities=13% Similarity=0.114 Sum_probs=69.6
Q ss_pred HHHHHHHHHHHHHCCCCEEEEccC--ccCcCC-------------CCHHHHHHHHHHHHHhh-CCCcEEEE-ecCCCCHH
Q 018253 78 LEAYDDLVNMQIVNGAEGMIVGGT--TGEGQL-------------MSWDEHIMLIGHTVNCF-GASVKVIG-NTGSNSTR 140 (359)
Q Consensus 78 ~~~l~~li~~li~~Gv~Gl~v~Gs--tGE~~~-------------LT~~Er~~li~~~v~~~-~grvpVia-gvg~~st~ 140 (359)
.+-+....+--.+.|+|=+=+.=+ .++|.. ++.+.-.+.++.+++.+ +|++||++ |=...+.+
T Consensus 216 ~d~Ia~AaRiaaELGADIVKv~yp~~~~~f~~v~~~~~~~~~~~~~~~~~~~~~~~~~V~ac~ag~vpVviAGG~k~~~~ 295 (348)
T PRK09250 216 ADLTGQANHLAATIGADIIKQKLPTNNGGYKAINFGKTDDRVYSKLTSDHPIDLVRYQVANCYMGRRGLINSGGASKGED 295 (348)
T ss_pred HHHHHHHHHHHHHHcCCEEEecCCCChhhHHHhhcccccccccccccccchHHHHHHHHHhhccCCceEEEeCCCCCCHH
Confidence 444555555555688886555433 334333 34445555666667754 78899766 44444788
Q ss_pred HHHHHHHHH---HhCCCCEEEEcCCCCCCCCHHHHHHHHHHHHh
Q 018253 141 EAIHATEQG---FAVGMHAALHINPYYGKTSLEGLISHFDSVLS 181 (359)
Q Consensus 141 ~ai~la~~a---~~~Gadav~v~pP~y~~~s~~~l~~yf~~Ia~ 181 (359)
+.++.++.+ .+.|+.++.+--=.|..+++|. ++..++|.+
T Consensus 296 e~L~~v~~a~~~i~aGa~Gv~iGRNIfQ~~~~ea-~~~~~~i~~ 338 (348)
T PRK09250 296 DLLDAVRTAVINKRAGGMGLIIGRKAFQRPMAEG-VKLLNAIQD 338 (348)
T ss_pred HHHHHHHHHHHhhhcCCcchhhchhhhcCCcHHH-HHHHHHHHH
Confidence 999999999 9999999999877888776554 666676665
No 324
>PLN02535 glycolate oxidase
Probab=82.80 E-value=45 Score=33.40 Aligned_cols=75 Identities=13% Similarity=0.201 Sum_probs=47.6
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEccCccC--------------------------------------------cCCCCHH
Q 018253 76 FDLEAYDDLVNMQIVNGAEGMIVGGTTGE--------------------------------------------GQLMSWD 111 (359)
Q Consensus 76 ID~~~l~~li~~li~~Gv~Gl~v~GstGE--------------------------------------------~~~LT~~ 111 (359)
=|.+-.++++++-.++|+++|++.--+-. -..+|++
T Consensus 134 ~dr~~~~~ll~RA~~aG~~alvlTvD~p~~g~R~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tW~ 213 (364)
T PLN02535 134 KRRDIAAQLVQRAEKNGYKAIVLTADVPRLGRREADIKNKMISPQLKNFEGLLSTEVVSDKGSGLEAFASETFDASLSWK 213 (364)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEeecCCCCCCchhhhhcCCCCcchhhHhhhhccCCCccccccHHHHHHhccCCCCCHH
Confidence 35677888888888889888887322200 1234554
Q ss_pred HHHHHHHHHHHhhCCCcEEEE-ecCCCCHHHHHHHHHHHHhCCCCEEEEcCC
Q 018253 112 EHIMLIGHTVNCFGASVKVIG-NTGSNSTREAIHATEQGFAVGMHAALHINP 162 (359)
Q Consensus 112 Er~~li~~~v~~~~grvpVia-gvg~~st~~ai~la~~a~~~Gadav~v~pP 162 (359)
. ++.+.+.. ++|||+ ||. +.++ ++.+.++|+|++.+..-
T Consensus 214 ~----i~~lr~~~--~~PvivKgV~--~~~d----A~~a~~~GvD~I~vsn~ 253 (364)
T PLN02535 214 D----IEWLRSIT--NLPILIKGVL--TRED----AIKAVEVGVAGIIVSNH 253 (364)
T ss_pred H----HHHHHhcc--CCCEEEecCC--CHHH----HHHHHhcCCCEEEEeCC
Confidence 3 23333333 578887 563 3444 67888899999988753
No 325
>PRK04302 triosephosphate isomerase; Provisional
Probab=82.77 E-value=29 Score=31.91 Aligned_cols=65 Identities=9% Similarity=0.102 Sum_probs=31.0
Q ss_pred HHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCCCHHHHHHHHHHHHhCCCCEEEEcC
Q 018253 85 VNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHIN 161 (359)
Q Consensus 85 i~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~st~~ai~la~~a~~~Gadav~v~p 161 (359)
++.+.+.|++|+++.-+ | ..+..+|-.++++.+.+. .+.+|+.+++ . +.++.+.+.|.|.+-+.|
T Consensus 78 ~~~l~~~G~~~vii~~s--e-r~~~~~e~~~~v~~a~~~---Gl~~I~~v~~--~----~~~~~~~~~~~~~I~~~p 142 (223)
T PRK04302 78 PEAVKDAGAVGTLINHS--E-RRLTLADIEAVVERAKKL---GLESVVCVNN--P----ETSAAAAALGPDYVAVEP 142 (223)
T ss_pred HHHHHHcCCCEEEEecc--c-cccCHHHHHHHHHHHHHC---CCeEEEEcCC--H----HHHHHHhcCCCCEEEEeC
Confidence 55566677777665433 2 114555555555554442 2334444443 2 223334445555544444
No 326
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=82.67 E-value=21 Score=38.01 Aligned_cols=81 Identities=11% Similarity=0.046 Sum_probs=68.6
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCCCHHHHHHHHHHHHhCCC
Q 018253 75 RFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGM 154 (359)
Q Consensus 75 ~ID~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~st~~ai~la~~a~~~Ga 154 (359)
..|.+-+.++++.+.+.|++.|.+.-|+|- +++++-.++++.+.+..+ +||=+++ +++..-++.-+-.|.++||
T Consensus 150 ~~t~~~~~~~a~~l~~~Gad~I~i~Dt~G~---~~P~~~~~lv~~lk~~~~--~pi~~H~-Hnt~Gla~An~laAv~aGa 223 (592)
T PRK09282 150 VHTIEKYVELAKELEEMGCDSICIKDMAGL---LTPYAAYELVKALKEEVD--LPVQLHS-HCTSGLAPMTYLKAVEAGV 223 (592)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEECCcCCC---cCHHHHHHHHHHHHHhCC--CeEEEEE-cCCCCcHHHHHHHHHHhCC
Confidence 368999999999999999999999999996 789999999999988773 6776655 4677788888999999999
Q ss_pred CEEEEcC
Q 018253 155 HAALHIN 161 (359)
Q Consensus 155 dav~v~p 161 (359)
|.+=..-
T Consensus 224 d~vD~ai 230 (592)
T PRK09282 224 DIIDTAI 230 (592)
T ss_pred CEEEeec
Confidence 9885443
No 327
>PLN02493 probable peroxisomal (S)-2-hydroxy-acid oxidase
Probab=82.62 E-value=52 Score=32.99 Aligned_cols=74 Identities=11% Similarity=0.151 Sum_probs=48.0
Q ss_pred CHHHHHHHHHHHHHCCCCEEEEccCccC-----------------------------------------------cCCCC
Q 018253 77 DLEAYDDLVNMQIVNGAEGMIVGGTTGE-----------------------------------------------GQLMS 109 (359)
Q Consensus 77 D~~~l~~li~~li~~Gv~Gl~v~GstGE-----------------------------------------------~~~LT 109 (359)
|.+..++++++-.++|+.+|++.--+-- -.++|
T Consensus 133 Dr~~~~~li~RA~~aG~~alvlTvD~p~~G~R~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t 212 (367)
T PLN02493 133 NRNVVEQLVRRAERAGFKAIALTVDTPRLGRRESDIKNRFTLPPNLTLKNFEGLDLGKMDEANDSGLASYVAGQIDRTLS 212 (367)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEcCCCCCCcchhhhcccCCCCcccchhhhhhccccCCCcccchhHHHHHhhcCCCCCC
Confidence 6678888888888888888877211100 12455
Q ss_pred HHHHHHHHHHHHHhhCCCcEEEE-ecCCCCHHHHHHHHHHHHhCCCCEEEEcCC
Q 018253 110 WDEHIMLIGHTVNCFGASVKVIG-NTGSNSTREAIHATEQGFAVGMHAALHINP 162 (359)
Q Consensus 110 ~~Er~~li~~~v~~~~grvpVia-gvg~~st~~ai~la~~a~~~Gadav~v~pP 162 (359)
+++ ++...+.. ++|||+ ||.+ .+-++.|.++|+|+|.+..-
T Consensus 213 W~d----i~wlr~~~--~~PiivKgV~~------~~dA~~a~~~Gvd~I~Vsnh 254 (367)
T PLN02493 213 WKD----VQWLQTIT--KLPILVKGVLT------GEDARIAIQAGAAGIIVSNH 254 (367)
T ss_pred HHH----HHHHHhcc--CCCEEeecCCC------HHHHHHHHHcCCCEEEECCC
Confidence 544 22233333 579888 7752 56677888899999988753
No 328
>PRK02412 aroD 3-dehydroquinate dehydratase; Provisional
Probab=82.62 E-value=40 Score=31.72 Aligned_cols=107 Identities=15% Similarity=0.105 Sum_probs=50.5
Q ss_pred CCCHHHHHHHHHHHHHCC-CCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecC----CCCHHHHHHHHHHH
Q 018253 75 RFDLEAYDDLVNMQIVNG-AEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTG----SNSTREAIHATEQG 149 (359)
Q Consensus 75 ~ID~~~l~~li~~li~~G-v~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg----~~st~~ai~la~~a 149 (359)
+.+.+...++++..++.| ++.+=+ |.. ...+...++++.+. .++++||+.-- ..+.++..+..+.+
T Consensus 91 ~~~~~~~~~ll~~~~~~~~~d~vDi-----El~-~~~~~~~~l~~~~~---~~~~kvI~S~H~f~~tP~~~~l~~~~~~~ 161 (253)
T PRK02412 91 ALSDEEYLALIKAVIKSGLPDYIDV-----ELF-SGKDVVKEMVAFAH---EHGVKVVLSYHDFEKTPPKEEIVERLRKM 161 (253)
T ss_pred CCCHHHHHHHHHHHHhcCCCCEEEE-----ecc-CChHHHHHHHHHHH---HcCCEEEEeeCCCCCCcCHHHHHHHHHHH
Confidence 356666666666666666 555544 211 11222333333222 23456666432 23445666667777
Q ss_pred HhCCCCEEEEcCCCCCCCCHHHHHHHHHHHHhc---CCeEEEeC
Q 018253 150 FAVGMHAALHINPYYGKTSLEGLISHFDSVLSM---GPTIIYNV 190 (359)
Q Consensus 150 ~~~Gadav~v~pP~y~~~s~~~l~~yf~~Ia~a---~PiiiYn~ 190 (359)
++.|||-+=+....-...+-..+.....++.+. .|++.|+.
T Consensus 162 ~~~gaDivKia~~a~~~~D~~~ll~~~~~~~~~~~~~P~i~~~M 205 (253)
T PRK02412 162 ESLGADIVKIAVMPQSEQDVLTLLNATREMKELYADQPLITMSM 205 (253)
T ss_pred HHhCCCEEEEEecCCCHHHHHHHHHHHHHHHhcCCCCCEEEEeC
Confidence 777777664432222111222344444444321 46666664
No 329
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=82.58 E-value=27 Score=31.01 Aligned_cols=108 Identities=11% Similarity=0.069 Sum_probs=61.1
Q ss_pred HHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEe-cCCCCHHHHHHHHHHHHhCCCCEEEEcC
Q 018253 83 DLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGN-TGSNSTREAIHATEQGFAVGMHAALHIN 161 (359)
Q Consensus 83 ~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViag-vg~~st~~ai~la~~a~~~Gadav~v~p 161 (359)
..++.+.+.|++++.+-+.++ .++-.++++.+.+. .+++++- .+..+..+..+ +.+.|+|.+.+.|
T Consensus 68 ~~~~~~~~aGad~i~~h~~~~------~~~~~~~i~~~~~~---g~~~~v~~~~~~t~~e~~~----~~~~~~d~v~~~~ 134 (202)
T cd04726 68 LEAEMAFKAGADIVTVLGAAP------LSTIKKAVKAAKKY---GKEVQVDLIGVEDPEKRAK----LLKLGVDIVILHR 134 (202)
T ss_pred HHHHHHHhcCCCEEEEEeeCC------HHHHHHHHHHHHHc---CCeEEEEEeCCCCHHHHHH----HHHCCCCEEEEcC
Confidence 346788899999999887663 23344566555442 3555543 45555555543 6668999887743
Q ss_pred CCCCCCC--HHHHHHHHHHHHhcCCeEEEeCCCCCCCCCCHHHHHHHhcC
Q 018253 162 PYYGKTS--LEGLISHFDSVLSMGPTIIYNVPSRTGQDIPPRVIHTMAQS 209 (359)
Q Consensus 162 P~y~~~s--~~~l~~yf~~Ia~a~PiiiYn~P~~tg~~ls~e~l~~La~~ 209 (359)
.+...+ .....+..+.+.+. ++.|-.-.-.++++.+.++.+.
T Consensus 135 -~~~~~~~~~~~~~~~i~~~~~~-----~~~~i~~~GGI~~~~i~~~~~~ 178 (202)
T cd04726 135 -GIDAQAAGGWWPEDDLKKVKKL-----LGVKVAVAGGITPDTLPEFKKA 178 (202)
T ss_pred -cccccccCCCCCHHHHHHHHhh-----cCCCEEEECCcCHHHHHHHHhc
Confidence 321111 12234555555542 2333222224678888888754
No 330
>TIGR01496 DHPS dihydropteroate synthase. This model represents dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis. The gene is usually designated folP (folic acid biosynthsis) or sul (sulfanilamide resistance). This model represents one branch of the family of pterin-binding enzymes (pfam00809) and of a cluster of dihydropteroate synthase and related enzymes (COG0294). Other members of pfam00809 and COG0294 are represented by TIGR00284.
Probab=82.53 E-value=14 Score=35.02 Aligned_cols=117 Identities=13% Similarity=0.232 Sum_probs=67.4
Q ss_pred CceEEeeecCCCCCCC-CCHHHHHHHHHHHHHCCCCEEEEcc-CccC-cCCCCHH-HHHHHHHHHHHhhCC--CcEEEEe
Q 018253 60 LRLITAIKTPYLPDGR-FDLEAYDDLVNMQIVNGAEGMIVGG-TTGE-GQLMSWD-EHIMLIGHTVNCFGA--SVKVIGN 133 (359)
Q Consensus 60 ~Gi~~al~TPF~~dg~-ID~~~l~~li~~li~~Gv~Gl~v~G-stGE-~~~LT~~-Er~~li~~~v~~~~g--rvpViag 133 (359)
.||+-..+=-|.+.|. .+.+...++++.+++.|++-|=++| +|.- ....+.+ |..++. .+++.+.. ++||.+-
T Consensus 3 mgilN~tpdSF~dg~~~~~~~~~~~~a~~~~~~GA~iIDIG~~st~p~~~~i~~~~E~~rl~-~~v~~~~~~~~~plsiD 81 (257)
T TIGR01496 3 MGIVNVTPDSFSDGGRFLSVDKAVAHAERMLEEGADIIDVGGESTRPGADRVSPEEELNRVV-PVIKALRDQPDVPISVD 81 (257)
T ss_pred EEEEeCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCHHHHHHHHH-HHHHHHHhcCCCeEEEe
Confidence 4555544445766666 6889999999999999999999975 3322 2234666 544444 34444432 5676554
Q ss_pred cCCCCHHHHHHHHHHHHhCCCCEEEEcCCCCCCCCHHHHHHHHHHHHhc-CCeEEEeC
Q 018253 134 TGSNSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSM-GPTIIYNV 190 (359)
Q Consensus 134 vg~~st~~ai~la~~a~~~Gadav~v~pP~y~~~s~~~l~~yf~~Ia~a-~PiiiYn~ 190 (359)
+. +.+. ++.|.+.|++-+--+. ... . + +.+..+++. .|+++-+.
T Consensus 82 T~--~~~v----i~~al~~G~~iINsis--~~~-~-~---~~~~l~~~~~~~vV~m~~ 126 (257)
T TIGR01496 82 TY--RAEV----ARAALEAGADIINDVS--GGQ-D-P---AMLEVAAEYGVPLVLMHM 126 (257)
T ss_pred CC--CHHH----HHHHHHcCCCEEEECC--CCC-C-c---hhHHHHHHcCCcEEEEeC
Confidence 43 3332 3334445988666552 222 2 2 233335554 68777553
No 331
>PRK06252 methylcobalamin:coenzyme M methyltransferase; Validated
Probab=82.36 E-value=42 Score=32.62 Aligned_cols=44 Identities=9% Similarity=0.074 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHhCCCCEEEEcCCCCC--CCCHHHHH----HHHHHHHhc
Q 018253 139 TREAIHATEQGFAVGMHAALHINPYYG--KTSLEGLI----SHFDSVLSM 182 (359)
Q Consensus 139 t~~ai~la~~a~~~Gadav~v~pP~y~--~~s~~~l~----~yf~~Ia~a 182 (359)
++..++.++...++|||.+.+.-|.-. -.|+++.. .|++.|.+.
T Consensus 179 ~~~~~~~~~~~~~aGad~I~i~d~~a~~~~lsp~~f~ef~~p~~~~i~~~ 228 (339)
T PRK06252 179 TDFCIEYAKAQLEAGADVICIADPSASPELLGPKMFEEFVLPYLNKIIDE 228 (339)
T ss_pred HHHHHHHHHHHHHcCCCEEEeCCCCccccccCHHHHHHHHHHHHHHHHHH
Confidence 334566677777778888777777542 23544433 444566554
No 332
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=82.33 E-value=16 Score=35.86 Aligned_cols=88 Identities=17% Similarity=0.175 Sum_probs=60.0
Q ss_pred HHHHHHCCCCEEEE-ccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCCCHHHHHHHHHHHHhCCCCEEEEcCCC
Q 018253 85 VNMQIVNGAEGMIV-GGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPY 163 (359)
Q Consensus 85 i~~li~~Gv~Gl~v-~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~st~~ai~la~~a~~~Gadav~v~pP~ 163 (359)
.+.+.+.|+..+.. ..-.|-+..++..|..+. .++. .++|||++.|=.+.+++ ..|.++|+|++++-.-.
T Consensus 211 a~~l~~~g~~avmPl~~pIGsg~gv~~p~~i~~---~~e~--~~vpVivdAGIg~~sda----~~AmelGadgVL~nSaI 281 (326)
T PRK11840 211 AKRLEDAGAVAVMPLGAPIGSGLGIQNPYTIRL---IVEG--ATVPVLVDAGVGTASDA----AVAMELGCDGVLMNTAI 281 (326)
T ss_pred HHHHHhcCCEEEeeccccccCCCCCCCHHHHHH---HHHc--CCCcEEEeCCCCCHHHH----HHHHHcCCCEEEEccee
Confidence 34455668877777 445666666775555444 4444 36999998886667665 56778999999998877
Q ss_pred CCCCCHHHHHHHHHHHHh
Q 018253 164 YGKTSLEGLISHFDSVLS 181 (359)
Q Consensus 164 y~~~s~~~l~~yf~~Ia~ 181 (359)
....++-.+-+-|+.-.+
T Consensus 282 a~a~dPv~Ma~A~~~av~ 299 (326)
T PRK11840 282 AEAKNPVLMARAMKLAVE 299 (326)
T ss_pred ccCCCHHHHHHHHHHHHH
Confidence 666677776666665443
No 333
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=82.32 E-value=10 Score=40.29 Aligned_cols=81 Identities=19% Similarity=0.180 Sum_probs=68.9
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCCCHHHHHHHHHHHHhCCC
Q 018253 75 RFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGM 154 (359)
Q Consensus 75 ~ID~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~st~~ai~la~~a~~~Ga 154 (359)
..|.+-+.++++.+.+.|++.|.+.-|+|= +++.+-.++++.+.+.++ +|+=+++ +++..-++.-+-.|.++||
T Consensus 145 ~~~~~~~~~~~~~~~~~Gad~I~i~Dt~G~---~~P~~v~~lv~~lk~~~~--~pi~~H~-Hnt~Gla~An~laAveaGa 218 (582)
T TIGR01108 145 VHTLETYLDLAEELLEMGVDSICIKDMAGI---LTPKAAYELVSALKKRFG--LPVHLHS-HATTGMAEMALLKAIEAGA 218 (582)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEECCCCCC---cCHHHHHHHHHHHHHhCC--CceEEEe-cCCCCcHHHHHHHHHHhCC
Confidence 378999999999999999999999999995 899999999999888774 6766555 5677788889999999999
Q ss_pred CEEEEcC
Q 018253 155 HAALHIN 161 (359)
Q Consensus 155 dav~v~p 161 (359)
|.+=..-
T Consensus 219 ~~vd~ai 225 (582)
T TIGR01108 219 DGIDTAI 225 (582)
T ss_pred CEEEecc
Confidence 9885554
No 334
>TIGR00430 Q_tRNA_tgt tRNA-guanine transglycosylase, queuosine-34-forming. This tRNA-guanine transglycosylase (tgt) catalyzes an exchange for the guanine base at position 34 of many tRNAs; this nucleotide is subsequently modified to queuosine. The Archaea have a closely related enzyme that catalyzes a base exchange for guanine at position 15 in some tRNAs, a site that is subsequently converted to the archaeal-specific modified base archaeosine (7-formamidino-7-deazaguanosine), while Archaeoglobus fulgidus has both enzymes.
Probab=82.20 E-value=15 Score=36.80 Aligned_cols=81 Identities=16% Similarity=0.200 Sum_probs=58.9
Q ss_pred CCCCHHHHHHHHHHHHHCCCCEEEEcc-CccCcCCCCHHHHHHHHHHHHHhhCCCcEEEE-ecCCCCHHHHHHHHHHHHh
Q 018253 74 GRFDLEAYDDLVNMQIVNGAEGMIVGG-TTGEGQLMSWDEHIMLIGHTVNCFGASVKVIG-NTGSNSTREAIHATEQGFA 151 (359)
Q Consensus 74 g~ID~~~l~~li~~li~~Gv~Gl~v~G-stGE~~~LT~~Er~~li~~~v~~~~grvpVia-gvg~~st~~ai~la~~a~~ 151 (359)
|-.|.+-=++-++.+.+.+.+|+.++| +.|| +.+|..++++.+....+...|..+ |+| +..+.++. .+
T Consensus 186 Gg~~~dLR~~sa~~l~~~~~~G~aIGGl~~ge----~~~~~~~iv~~~~~~lp~~kPryl~Gvg--~P~~i~~~----v~ 255 (368)
T TIGR00430 186 GGTYEDLRSQSAEGLIELDFPGYAIGGLSVGE----PKEDMLRILEHTAPLLPKDKPRYLMGVG--TPEDLLNA----IR 255 (368)
T ss_pred CCCCHHHHHHHHHHHHHCCCCeeEeCCccCCC----CHHHHHHHHHHHHhhCCcccceeecCCC--CHHHHHHH----HH
Confidence 455555555568888889999999999 7787 578899999999888887777644 776 45555544 45
Q ss_pred CCCCEEEEcCCCC
Q 018253 152 VGMHAALHINPYY 164 (359)
Q Consensus 152 ~Gadav~v~pP~y 164 (359)
.|+|-+=.+.|+.
T Consensus 256 ~GvD~FD~~~ptr 268 (368)
T TIGR00430 256 RGIDMFDCVMPTR 268 (368)
T ss_pred cCCCEEEecCccc
Confidence 8999775555543
No 335
>COG0274 DeoC Deoxyribose-phosphate aldolase [Nucleotide transport and metabolism]
Probab=82.19 E-value=25 Score=32.84 Aligned_cols=129 Identities=19% Similarity=0.150 Sum_probs=97.1
Q ss_pred eEEeeecCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCC--cEEEEecCCCCH
Q 018253 62 LITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGAS--VKVIGNTGSNST 139 (359)
Q Consensus 62 i~~al~TPF~~dg~ID~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~gr--vpViagvg~~st 139 (359)
+-.+.++=| +.|.-..+.=....+..++.|++=|=+.=.-|..-+-.++.-.+-++.+++.++++ ++||.-++-.+.
T Consensus 61 ~~v~tVigF-P~G~~~t~~K~~Ea~~ai~~GAdEiDmVinig~~k~g~~~~V~~eI~~v~~a~~~~~~lKVIlEt~~Lt~ 139 (228)
T COG0274 61 VRVCTVIGF-PLGANTTAVKAAEAREAIENGADEIDMVINIGALKSGNWEAVEREIRAVVEACADAVVLKVILETGLLTD 139 (228)
T ss_pred eEEEEecCC-CCCCChHHHHHHHHHHHHHcCCCeeeeeeeHHHHhcCCHHHHHHHHHHHHHHhCCCceEEEEEeccccCH
Confidence 336777777 67877777767777788999988777777778888888888888888888888874 778999999999
Q ss_pred HHHHHHHHHHHhCCCCEEEEcCCCCCCCCHHHHHHHHHHHHhcCCeEEEeCCCCCCCCCCHHHHHHHhc-CCCeEEEecc
Q 018253 140 REAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSMGPTIIYNVPSRTGQDIPPRVIHTMAQ-SPNLAGVKEC 218 (359)
Q Consensus 140 ~~ai~la~~a~~~Gadav~v~pP~y~~~s~~~l~~yf~~Ia~a~PiiiYn~P~~tg~~ls~e~l~~La~-~pnivGiK~s 218 (359)
++-+...+.+.++|||.|=-..-++ +..=+++.+.-+.+ ...-+|||-|
T Consensus 140 ee~~~A~~i~~~aGAdFVKTSTGf~------------------------------~~gAT~edv~lM~~~vg~~vgvKaS 189 (228)
T COG0274 140 EEKRKACEIAIEAGADFVKTSTGFS------------------------------AGGATVEDVKLMKETVGGRVGVKAS 189 (228)
T ss_pred HHHHHHHHHHHHhCCCEEEcCCCCC------------------------------CCCCCHHHHHHHHHHhccCceeecc
Confidence 9999999999999999665443333 22344555555553 4667889988
Q ss_pred Cch
Q 018253 219 VGN 221 (359)
Q Consensus 219 s~d 221 (359)
+|=
T Consensus 190 GGI 192 (228)
T COG0274 190 GGI 192 (228)
T ss_pred CCc
Confidence 763
No 336
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=82.06 E-value=9.4 Score=37.72 Aligned_cols=71 Identities=17% Similarity=0.236 Sum_probs=45.6
Q ss_pred HHHHHHCCCCEEEEc------cCccCcCCCCHHHHHHHHHHHHHhhCC-CcEEEEecCCCCHHHHHHHHHHHHhCCCCEE
Q 018253 85 VNMQIVNGAEGMIVG------GTTGEGQLMSWDEHIMLIGHTVNCFGA-SVKVIGNTGSNSTREAIHATEQGFAVGMHAA 157 (359)
Q Consensus 85 i~~li~~Gv~Gl~v~------GstGE~~~LT~~Er~~li~~~v~~~~g-rvpViagvg~~st~~ai~la~~a~~~Gadav 157 (359)
++.|+++|+|++.|. .+|-+..---.. +...+..+++.+.+ ++|||+-=|-..--+.+ .|..+|||+|
T Consensus 164 a~~Li~aGAD~ikVgiGpGSicttR~~~Gvg~p-qltAv~~~a~aa~~~~v~VIaDGGIr~~gDI~----KALA~GAd~V 238 (343)
T TIGR01305 164 VEELILSGADIVKVGIGPGSVCTTRTKTGVGYP-QLSAVIECADAAHGLKGHIISDGGCTCPGDVA----KAFGAGADFV 238 (343)
T ss_pred HHHHHHcCCCEEEEcccCCCcccCceeCCCCcC-HHHHHHHHHHHhccCCCeEEEcCCcCchhHHH----HHHHcCCCEE
Confidence 456778999999877 455554444434 45555556666666 79999943322333322 3455999999
Q ss_pred EEc
Q 018253 158 LHI 160 (359)
Q Consensus 158 ~v~ 160 (359)
|+-
T Consensus 239 MlG 241 (343)
T TIGR01305 239 MLG 241 (343)
T ss_pred EEC
Confidence 998
No 337
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=82.03 E-value=19 Score=37.39 Aligned_cols=143 Identities=13% Similarity=0.119 Sum_probs=84.0
Q ss_pred HHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCCCHHHHHHHHHHHHhCCCCEEE--
Q 018253 81 YDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAAL-- 158 (359)
Q Consensus 81 l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~st~~ai~la~~a~~~Gadav~-- 158 (359)
....++.|+++|++-|++=.+.|- + +-..++++.+.+.. .++|||+|-.. +. +-++++.++|||++-
T Consensus 226 ~~~ra~~Lv~aGVd~i~~D~a~g~--~---~~~~~~i~~i~~~~-~~~~vi~g~~~-t~----~~~~~l~~~G~d~i~vg 294 (475)
T TIGR01303 226 VGGKAKALLDAGVDVLVIDTAHGH--Q---VKMISAIKAVRALD-LGVPIVAGNVV-SA----EGVRDLLEAGANIIKVG 294 (475)
T ss_pred HHHHHHHHHHhCCCEEEEeCCCCC--c---HHHHHHHHHHHHHC-CCCeEEEeccC-CH----HHHHHHHHhCCCEEEEC
Confidence 457888899999999998777743 3 44555666665544 36899997443 22 334555579999997
Q ss_pred ------EcCCCCCC---CCHHHHHHHHHHHHhc-CCeEEEeCCCCCCCCCCHHHHHHHhc--CCC-----eEEEeccCch
Q 018253 159 ------HINPYYGK---TSLEGLISHFDSVLSM-GPTIIYNVPSRTGQDIPPRVIHTMAQ--SPN-----LAGVKECVGN 221 (359)
Q Consensus 159 ------v~pP~y~~---~s~~~l~~yf~~Ia~a-~PiiiYn~P~~tg~~ls~e~l~~La~--~pn-----ivGiK~ss~d 221 (359)
.+...|.. ++...+.+-.+...+. .|||- --|+.-+-+..+.|+- .-- +.|-.++.++
T Consensus 295 ~g~Gs~~ttr~~~~~g~~~~~a~~~~~~~~~~~~~~via-----dGgi~~~~di~kala~GA~~vm~g~~~ag~~espg~ 369 (475)
T TIGR01303 295 VGPGAMCTTRMMTGVGRPQFSAVLECAAEARKLGGHVWA-----DGGVRHPRDVALALAAGASNVMVGSWFAGTYESPGD 369 (475)
T ss_pred CcCCccccCccccCCCCchHHHHHHHHHHHHHcCCcEEE-----eCCCCCHHHHHHHHHcCCCEEeechhhcccccCCCc
Confidence 45555532 3334444444433333 56553 3577777788888873 222 3333333333
Q ss_pred hhHhhhhCCceEEEecCCc
Q 018253 222 DRVEHYTGNGIVVWSGNDD 240 (359)
Q Consensus 222 ~~l~~~~~~~~~v~~G~d~ 240 (359)
. +..+.+..+..|-|...
T Consensus 370 ~-~~~~~g~~~k~yrGmgs 387 (475)
T TIGR01303 370 L-MRDRDGRPYKESFGMAS 387 (475)
T ss_pred e-EEeECCEEEEEEecccC
Confidence 1 11133456677777643
No 338
>TIGR00510 lipA lipoate synthase. The family shows strong sequence conservation.
Probab=82.02 E-value=8.6 Score=37.42 Aligned_cols=77 Identities=12% Similarity=0.050 Sum_probs=43.8
Q ss_pred CCHHHHHHHHHHHHhC--CC---CEEEEcCCCCCCCCHHHHHHHHHHHHhc----CCeEEEeCCCCCCC----CCCHHHH
Q 018253 137 NSTREAIHATEQGFAV--GM---HAALHINPYYGKTSLEGLISHFDSVLSM----GPTIIYNVPSRTGQ----DIPPRVI 203 (359)
Q Consensus 137 ~st~~ai~la~~a~~~--Ga---dav~v~pP~y~~~s~~~l~~yf~~Ia~a----~PiiiYn~P~~tg~----~ls~e~l 203 (359)
.+.++.++..+.+.++ |. .++|+- + .-|++++.+.++.|.+. ++|.=|--|+..+. -++|+.+
T Consensus 188 ~t~e~~Le~l~~ak~~~pgi~~~TgiIVG---l-GETeee~~etl~~Lrelg~d~v~igqYl~p~~~~~~v~~~~~p~~f 263 (302)
T TIGR00510 188 ATYRWSLKLLERAKEYLPNLPTKSGIMVG---L-GETNEEIKQTLKDLRDHGVTMVTLGQYLRPSRRHLPVKRYVSPEEF 263 (302)
T ss_pred CCHHHHHHHHHHHHHhCCCCeecceEEEE---C-CCCHHHHHHHHHHHHhcCCCEEEeecccCCCCCCCccccCCCHHHH
Confidence 3566666666666665 22 233332 2 45667777777777664 35555655644433 2567777
Q ss_pred HHHhcCCCeEEEec
Q 018253 204 HTMAQSPNLAGVKE 217 (359)
Q Consensus 204 ~~La~~pnivGiK~ 217 (359)
+.+.++..=.|+|.
T Consensus 264 ~~~~~~a~~~gf~~ 277 (302)
T TIGR00510 264 DYYRSVALEMGFLH 277 (302)
T ss_pred HHHHHHHHHcCChh
Confidence 77665444456654
No 339
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=82.00 E-value=6.5 Score=41.00 Aligned_cols=112 Identities=16% Similarity=0.038 Sum_probs=68.7
Q ss_pred HHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCCCHHHHHHHHHHHHhCCCCEEEEc
Q 018253 81 YDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHI 160 (359)
Q Consensus 81 l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~st~~ai~la~~a~~~Gadav~v~ 160 (359)
....++.|+++|++-+.+- +.++++-.. .+.++...+..+++++|++|.-. +. +.++.+.++|||++.+-
T Consensus 243 ~~~ra~~Lv~aGvd~i~vd--~a~g~~~~~---~~~i~~ir~~~~~~~~V~aGnV~-t~----e~a~~li~aGAd~I~vg 312 (502)
T PRK07107 243 YAERVPALVEAGADVLCID--SSEGYSEWQ---KRTLDWIREKYGDSVKVGAGNVV-DR----EGFRYLAEAGADFVKVG 312 (502)
T ss_pred HHHHHHHHHHhCCCeEeec--CcccccHHH---HHHHHHHHHhCCCCceEEecccc-CH----HHHHHHHHcCCCEEEEC
Confidence 4566777999999998876 555544333 56677777777666778877553 23 34455557999999773
Q ss_pred CCCC-----------CCCCHHHHHHHHHHHH---hc----CCeEEEeCCCCCCCCCCHHHHHHHh
Q 018253 161 NPYY-----------GKTSLEGLISHFDSVL---SM----GPTIIYNVPSRTGQDIPPRVIHTMA 207 (359)
Q Consensus 161 pP~y-----------~~~s~~~l~~yf~~Ia---~a----~PiiiYn~P~~tg~~ls~e~l~~La 207 (359)
...- ..+.-..+.+-.++.- ++ .|||. -.|+..+-+.++.|+
T Consensus 313 ~g~Gs~c~tr~~~~~g~~~~~ai~~~~~a~~~~~~~~g~~~~via-----dgGir~~gdi~KAla 372 (502)
T PRK07107 313 IGGGSICITREQKGIGRGQATALIEVAKARDEYFEETGVYIPICS-----DGGIVYDYHMTLALA 372 (502)
T ss_pred CCCCcCcccccccCCCccHHHHHHHHHHHHHHHHhhcCCcceEEE-----cCCCCchhHHHHHHH
Confidence 3211 1122233333333321 11 46543 368888889999998
No 340
>PRK12677 xylose isomerase; Provisional
Probab=81.73 E-value=49 Score=33.25 Aligned_cols=141 Identities=12% Similarity=0.047 Sum_probs=73.9
Q ss_pred HHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhC-CCcEEEE--------------ecCCC-------C
Q 018253 81 YDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFG-ASVKVIG--------------NTGSN-------S 138 (359)
Q Consensus 81 l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~-grvpVia--------------gvg~~-------s 138 (359)
+...++.+.+.|.+||-+....-.-+..+..||.+.++.+.+.+. ..+.|.+ +..+. +
T Consensus 33 ~~E~v~~~a~~Gf~gVElh~~~l~p~~~~~~~~~~~~~~lk~~l~~~GL~v~~v~~n~f~~p~~~~g~lts~d~~~R~~A 112 (384)
T PRK12677 33 PVEAVHKLAELGAYGVTFHDDDLVPFGATDAERDRIIKRFKKALDETGLVVPMVTTNLFTHPVFKDGAFTSNDRDVRRYA 112 (384)
T ss_pred HHHHHHHHHHhCCCEEEecccccCCCCCChhhhHHHHHHHHHHHHHcCCeeEEEecCCCCCccccCCcCCCCCHHHHHHH
Confidence 557778888999999977543323334455565434444333331 2344332 11121 2
Q ss_pred HHHHHHHHHHHHhCCCCEEEEcCCC-----CCCCCHHHHHHH----HHHHHhc-------CCeEEEeCCCC--CCCC-CC
Q 018253 139 TREAIHATEQGFAVGMHAALHINPY-----YGKTSLEGLISH----FDSVLSM-------GPTIIYNVPSR--TGQD-IP 199 (359)
Q Consensus 139 t~~ai~la~~a~~~Gadav~v~pP~-----y~~~s~~~l~~y----f~~Ia~a-------~PiiiYn~P~~--tg~~-ls 199 (359)
.+...+.++.|+++|++.+.+.+-+ ....+.++..++ ++.+++. +.+.|=+.|.. ..+- -+
T Consensus 113 i~~~~r~IdlA~eLGa~~Vvv~~G~~g~~~~~~~d~~~a~~~~~eaL~~l~~~A~~~G~gV~laIEpkp~ep~~~~~l~t 192 (384)
T PRK12677 113 LRKVLRNIDLAAELGAKTYVMWGGREGAEYDAAKDVRAALDRYREAIDLLAAYVKDQGYDLRFALEPKPNEPRGDILLPT 192 (384)
T ss_pred HHHHHHHHHHHHHhCCCEEEEeeCCCCccCcccCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEccCCCCCCCCeeeCC
Confidence 3335566678888999998887542 122233333333 3355542 23556555542 1222 34
Q ss_pred HHHHHHHh-c--CCCeEEEeccCch
Q 018253 200 PRVIHTMA-Q--SPNLAGVKECVGN 221 (359)
Q Consensus 200 ~e~l~~La-~--~pnivGiK~ss~d 221 (359)
++...++. + .|+.+|+=...+.
T Consensus 193 ~~~al~li~~lg~~~~vGv~lD~gH 217 (384)
T PRK12677 193 VGHALAFIATLEHPEMVGLNPEVGH 217 (384)
T ss_pred HHHHHHHHHHhCCCccEEEeeechH
Confidence 55566655 3 4788886643443
No 341
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=81.65 E-value=11 Score=35.46 Aligned_cols=88 Identities=13% Similarity=0.100 Sum_probs=59.7
Q ss_pred HHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCCCHHHHHHHHHHHHhCCCCEEEEc
Q 018253 81 YDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHI 160 (359)
Q Consensus 81 l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~st~~ai~la~~a~~~Gadav~v~ 160 (359)
...+++++.+.|++.+++....+... ....-.++++.+.+.+ .+||++|=|=.|.+++.++.. +|++.+++-
T Consensus 32 p~~~a~~~~~~G~~~l~v~Dl~~~~~--~~~~n~~~i~~i~~~~--~~pv~~~GGi~s~~d~~~~~~----~Ga~~vivg 103 (254)
T TIGR00735 32 PVELAQRYDEEGADELVFLDITASSE--GRTTMIDVVERTAETV--FIPLTVGGGIKSIEDVDKLLR----AGADKVSIN 103 (254)
T ss_pred HHHHHHHHHHcCCCEEEEEcCCcccc--cChhhHHHHHHHHHhc--CCCEEEECCCCCHHHHHHHHH----cCCCEEEEC
Confidence 34466666789999999998877532 3334566777777765 589999777667777666544 799999998
Q ss_pred CCCCCCCC-HHHHHHHH
Q 018253 161 NPYYGKTS-LEGLISHF 176 (359)
Q Consensus 161 pP~y~~~s-~~~l~~yf 176 (359)
...+..+. .+++.+.|
T Consensus 104 t~~~~~p~~~~~~~~~~ 120 (254)
T TIGR00735 104 TAAVKNPELIYELADRF 120 (254)
T ss_pred hhHhhChHHHHHHHHHc
Confidence 77765432 23344444
No 342
>COG4981 Enoyl reductase domain of yeast-type FAS1 [Lipid metabolism]
Probab=81.52 E-value=44 Score=35.21 Aligned_cols=145 Identities=17% Similarity=0.088 Sum_probs=93.2
Q ss_pred eEEeeecCCCCC-------------------CCCCHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHH--------H
Q 018253 62 LITAIKTPYLPD-------------------GRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEH--------I 114 (359)
Q Consensus 62 i~~al~TPF~~d-------------------g~ID~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er--------~ 114 (359)
++.+=+||-+-| |.++.+.+...++.|.. ++--|.|-.|.+|=.+-+ +
T Consensus 37 illaGMTPtTVdp~ivAAaAnAGhwaELAGGGq~t~e~~~~~i~ql~~-----~lepG~t~qfN~ifldpylw~~qig~k 111 (717)
T COG4981 37 ILLAGMTPTTVDPDIVAAAANAGHWAELAGGGQVTEEIFTNAIEQLVS-----LLEPGRTAQFNSIFLDPYLWKLQIGGK 111 (717)
T ss_pred eeecCCCCCcCCHHHHHHHhcCCceeeecCCcccCHHHHHHHHHHHHh-----ccCCCccceeeEEEechHHhhhcCChH
Confidence 777778887644 78999999999998865 233444444444332222 3
Q ss_pred HHHHHHHHhhCCCcEEEEecCCCCHHHHHHHHHHHHhCCCCEEEEcCCCCCCCCHHHHHHHHHHHHhc---CCeEEEeCC
Q 018253 115 MLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSM---GPTIIYNVP 191 (359)
Q Consensus 115 ~li~~~v~~~~grvpViagvg~~st~~ai~la~~a~~~Gadav~v~pP~y~~~s~~~l~~yf~~Ia~a---~PiiiYn~P 191 (359)
+|+..++..-..--=|+++.|=.+.++|.|+++..-+.|...+. +||..-+.++-.-.||.+ .||+++=--
T Consensus 112 rLv~kara~G~~I~gvvIsAGIP~le~A~ElI~~L~~~G~~yv~------fKPGtIeqI~svi~IAka~P~~pIilq~eg 185 (717)
T COG4981 112 RLVQKARASGAPIDGVVISAGIPSLEEAVELIEELGDDGFPYVA------FKPGTIEQIRSVIRIAKANPTFPIILQWEG 185 (717)
T ss_pred HHHHHHHhcCCCcceEEEecCCCcHHHHHHHHHHHhhcCceeEE------ecCCcHHHHHHHHHHHhcCCCCceEEEEec
Confidence 56766665322111256677778999999999987777765443 455433334455567876 589999777
Q ss_pred CCCCCCCCH--------HHHHHHhcCCCeEEEec
Q 018253 192 SRTGQDIPP--------RVIHTMAQSPNLAGVKE 217 (359)
Q Consensus 192 ~~tg~~ls~--------e~l~~La~~pnivGiK~ 217 (359)
++.|-.=|- .+..+|-.++||+=+--
T Consensus 186 GraGGHHSweDld~llL~tYs~lR~~~NIvl~vG 219 (717)
T COG4981 186 GRAGGHHSWEDLDDLLLATYSELRSRDNIVLCVG 219 (717)
T ss_pred CccCCccchhhcccHHHHHHHHHhcCCCEEEEec
Confidence 776654443 34556667999985543
No 343
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=81.34 E-value=23 Score=36.01 Aligned_cols=142 Identities=15% Similarity=0.126 Sum_probs=80.6
Q ss_pred HHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCCCHHHHHHHHHHHHhCCCCEEEEc
Q 018253 81 YDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHI 160 (359)
Q Consensus 81 l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~st~~ai~la~~a~~~Gadav~v~ 160 (359)
..+.++.|+++|+|-|++=.+.| ++.+ ..++++.+.+..+ +++||+|-.+ + .+.++++.++|||++.+-
T Consensus 154 ~~~~v~~lv~aGvDvI~iD~a~g--~~~~---~~~~v~~ik~~~p-~~~vi~g~V~-T----~e~a~~l~~aGaD~I~vG 222 (404)
T PRK06843 154 TIERVEELVKAHVDILVIDSAHG--HSTR---IIELVKKIKTKYP-NLDLIAGNIV-T----KEAALDLISVGADCLKVG 222 (404)
T ss_pred HHHHHHHHHhcCCCEEEEECCCC--CChh---HHHHHHHHHhhCC-CCcEEEEecC-C----HHHHHHHHHcCCCEEEEC
Confidence 45778889999999888755553 3333 3455555555554 5788875443 2 455666677999999865
Q ss_pred C-CCC---------CCCCHHHHHHHHHHHHhc--CCeEEEeCCCCCCCCCCHHHHHHHh--cCCC-----eEEEeccCch
Q 018253 161 N-PYY---------GKTSLEGLISHFDSVLSM--GPTIIYNVPSRTGQDIPPRVIHTMA--QSPN-----LAGVKECVGN 221 (359)
Q Consensus 161 p-P~y---------~~~s~~~l~~yf~~Ia~a--~PiiiYn~P~~tg~~ls~e~l~~La--~~pn-----ivGiK~ss~d 221 (359)
. |.- ....+-..+....++++. .|||. --|+.-+-+..+.|+ ..-- +.|-.++.++
T Consensus 223 ~g~Gs~c~tr~~~g~g~p~ltai~~v~~~~~~~~vpVIA-----dGGI~~~~Di~KALalGA~aVmvGs~~agt~Espg~ 297 (404)
T PRK06843 223 IGPGSICTTRIVAGVGVPQITAICDVYEVCKNTNICIIA-----DGGIRFSGDVVKAIAAGADSVMIGNLFAGTKESPSE 297 (404)
T ss_pred CCCCcCCcceeecCCCCChHHHHHHHHHHHhhcCCeEEE-----eCCCCCHHHHHHHHHcCCCEEEEcceeeeeecCCCc
Confidence 2 321 011233344444556554 57653 356666667777776 2322 3344444333
Q ss_pred hhHhhhhCCceEEEecCCc
Q 018253 222 DRVEHYTGNGIVVWSGNDD 240 (359)
Q Consensus 222 ~~l~~~~~~~~~v~~G~d~ 240 (359)
.- ..-+..+..|-|...
T Consensus 298 ~~--~~~g~~~K~yrGmgS 314 (404)
T PRK06843 298 EI--IYNGKKFKSYVGMGS 314 (404)
T ss_pred EE--EECCEEEEEEeccch
Confidence 21 122455677777643
No 344
>PRK00915 2-isopropylmalate synthase; Validated
Probab=81.33 E-value=11 Score=39.41 Aligned_cols=115 Identities=16% Similarity=0.080 Sum_probs=85.1
Q ss_pred cCCceEEeeecCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCC--cEEEEecC
Q 018253 58 KALRLITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGAS--VKVIGNTG 135 (359)
Q Consensus 58 ~~~Gi~~al~TPF~~dg~ID~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~gr--vpViagvg 135 (359)
+-.|..+. +++- +.++-|.+-+.++++.+.+.|++-|.++-|.|= ++++|-.++++.+.+.++++ +|+=++ .
T Consensus 130 k~~g~~v~-f~~e-d~~r~d~~~l~~~~~~~~~~Ga~~i~l~DTvG~---~~P~~~~~~i~~l~~~~~~~~~v~l~~H-~ 203 (513)
T PRK00915 130 RSYTDDVE-FSAE-DATRTDLDFLCRVVEAAIDAGATTINIPDTVGY---TTPEEFGELIKTLRERVPNIDKAIISVH-C 203 (513)
T ss_pred HHCCCeEE-EEeC-CCCCCCHHHHHHHHHHHHHcCCCEEEEccCCCC---CCHHHHHHHHHHHHHhCCCcccceEEEE-e
Confidence 34565543 3333 245689999999999999999999999999996 58999999999998877543 554444 4
Q ss_pred CCCHHHHHHHHHHHHhCCCCEEEEcCCCCC----CCCHHHHHHHHHH
Q 018253 136 SNSTREAIHATEQGFAVGMHAALHINPYYG----KTSLEGLISHFDS 178 (359)
Q Consensus 136 ~~st~~ai~la~~a~~~Gadav~v~pP~y~----~~s~~~l~~yf~~ 178 (359)
+++..-++..+..|.++||+.+-..---+. ..+-++++..++.
T Consensus 204 HND~GlAvANslaAv~aGa~~Vd~Tv~GlGERaGNa~lE~vv~~L~~ 250 (513)
T PRK00915 204 HNDLGLAVANSLAAVEAGARQVECTINGIGERAGNAALEEVVMALKT 250 (513)
T ss_pred cCCCCHHHHHHHHHHHhCCCEEEEEeecccccccCccHHHHHHHHHh
Confidence 678888999999999999998866643332 2345666555543
No 345
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=81.26 E-value=19 Score=37.25 Aligned_cols=97 Identities=13% Similarity=0.149 Sum_probs=73.6
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCCCHHHHHHHHHHHHhCCC
Q 018253 75 RFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGM 154 (359)
Q Consensus 75 ~ID~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~st~~ai~la~~a~~~Ga 154 (359)
.-+.+-+.++++.+.+.|++.|.+.-|+|= |++++-.++++.+.+. .++||=++. +++..-++.-+-.|.++||
T Consensus 159 ~~t~~y~~~~a~~l~~~Gad~I~IkDtaG~---l~P~~v~~Lv~alk~~--~~~pi~~H~-Hnt~GlA~An~laAieAGa 232 (468)
T PRK12581 159 VHTLNYYLSLVKELVEMGADSICIKDMAGI---LTPKAAKELVSGIKAM--TNLPLIVHT-HATSGISQMTYLAAVEAGA 232 (468)
T ss_pred cCcHHHHHHHHHHHHHcCCCEEEECCCCCC---cCHHHHHHHHHHHHhc--cCCeEEEEe-CCCCccHHHHHHHHHHcCC
Confidence 347788999999999999999999999994 7999999999888763 357776655 5677888899999999999
Q ss_pred CEEEEc-CCCCCC---CCHHHHHHHHH
Q 018253 155 HAALHI-NPYYGK---TSLEGLISHFD 177 (359)
Q Consensus 155 dav~v~-pP~y~~---~s~~~l~~yf~ 177 (359)
|.+=.. .|+-.. ++-|+++.+++
T Consensus 233 d~vD~ai~g~g~gagN~~tE~lv~~L~ 259 (468)
T PRK12581 233 DRIDTALSPFSEGTSQPATESMYLALK 259 (468)
T ss_pred CEEEeeccccCCCcCChhHHHHHHHHH
Confidence 988443 344333 33455554444
No 346
>TIGR00449 tgt_general tRNA-guanine transglycosylases, various specificities. Different tRNA-guanine transglycosylases catalyze different tRNA base modifications. Two guanine base substitutions by different enzymes described by the model are involved in generating queuosine at position 34 in bacterial tRNAs and archaeosine at position 15 in archaeal tRNAs. This model is designed for fragment searching, so the superfamily is used loosely.
Probab=81.06 E-value=16 Score=36.57 Aligned_cols=79 Identities=14% Similarity=0.182 Sum_probs=56.4
Q ss_pred CCCCHHHHHH-HHHHHHHCCCCEEEEcc-CccCcCCCCHHHHHHHHHHHHHhhCCCcEEE-EecCCCCHHHHHHHHHHHH
Q 018253 74 GRFDLEAYDD-LVNMQIVNGAEGMIVGG-TTGEGQLMSWDEHIMLIGHTVNCFGASVKVI-GNTGSNSTREAIHATEQGF 150 (359)
Q Consensus 74 g~ID~~~l~~-li~~li~~Gv~Gl~v~G-stGE~~~LT~~Er~~li~~~v~~~~grvpVi-agvg~~st~~ai~la~~a~ 150 (359)
|..+.+ +++ -++.+.+.+.+|+.++| +.|| +.+|..++++.+.+..+...|.. .|+| +..+.++. .
T Consensus 185 Gg~~~d-LR~~sa~~l~~~~~~GyaIGGl~~ge----~~~~~~~~l~~~~~~lP~~kPryl~Gvg--~P~~i~~~----v 253 (367)
T TIGR00449 185 GGTYPD-LRRQSAEGLAELDFDGYAIGGVSVGE----PKRDMLRILEHVAPLLPKDKPRYLMGVG--TPELLANA----V 253 (367)
T ss_pred CCCCHH-HHHHHHHHHhhCCCCeEEEeCcccCC----CHHHHHHHHHHHHhhCCcccceEecCCC--CHHHHHHH----H
Confidence 334444 443 48888888999999999 7788 44999999999998888766754 4777 46665544 4
Q ss_pred hCCCCEEEEcCCC
Q 018253 151 AVGMHAALHINPY 163 (359)
Q Consensus 151 ~~Gadav~v~pP~ 163 (359)
.+|+|-+=.+.|.
T Consensus 254 ~~GvD~FD~~~pt 266 (367)
T TIGR00449 254 SLGIDMFDCVAPT 266 (367)
T ss_pred HcCCCEEeeCCcc
Confidence 4899977555554
No 347
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=81.04 E-value=31 Score=30.89 Aligned_cols=111 Identities=9% Similarity=0.012 Sum_probs=61.4
Q ss_pred HHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCCCHHHHHHHHHHHHhCCCCEEEEcCCC
Q 018253 84 LVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPY 163 (359)
Q Consensus 84 li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~st~~ai~la~~a~~~Gadav~v~pP~ 163 (359)
.++.+.+.|++-+.+-+.++. ..-.++++.+.+ -.+++++++.+..+ ..+.++.+.+.|+|.+.+.|.+
T Consensus 68 ~~~~~~~~Gad~i~vh~~~~~------~~~~~~i~~~~~---~g~~~~~~~~~~~t--~~~~~~~~~~~g~d~v~~~pg~ 136 (206)
T TIGR03128 68 EAEQAFAAGADIVTVLGVADD------ATIKGAVKAAKK---HGKEVQVDLINVKD--KVKRAKELKELGADYIGVHTGL 136 (206)
T ss_pred HHHHHHHcCCCEEEEeccCCH------HHHHHHHHHHHH---cCCEEEEEecCCCC--hHHHHHHHHHcCCCEEEEcCCc
Confidence 577788999999988776542 222455555444 24788887543322 5566666778899988775433
Q ss_pred CCCCCHHHHHHHHHHHHhcCCeEEEeCCCCCCCCCCHHHHHHHhcC
Q 018253 164 YGKTSLEGLISHFDSVLSMGPTIIYNVPSRTGQDIPPRVIHTMAQS 209 (359)
Q Consensus 164 y~~~s~~~l~~yf~~Ia~a~PiiiYn~P~~tg~~ls~e~l~~La~~ 209 (359)
-.......-.+..+++.+..|.+..- ..| .++++.+.++.+.
T Consensus 137 ~~~~~~~~~~~~i~~l~~~~~~~~i~---v~G-GI~~~n~~~~~~~ 178 (206)
T TIGR03128 137 DEQAKGQNPFEDLQTILKLVKEARVA---VAG-GINLDTIPDVIKL 178 (206)
T ss_pred CcccCCCCCHHHHHHHHHhcCCCcEE---EEC-CcCHHHHHHHHHc
Confidence 21110011123344444433311111 123 4588888888753
No 348
>TIGR02151 IPP_isom_2 isopentenyl-diphosphate delta-isomerase, type 2. Isopentenyl-diphosphate delta-isomerase (IPP isomerase) interconverts isopentenyl diphosphate and dimethylallyl diphosphate. This model represents the type 2 enzyme. FMN, NADPH, and Mg2+ are required by this form, which lacks homology to the type 1 enzyme (TIGR02150). IPP is precursor to many compounds, including enzyme cofactors, sterols, and isoprenoids.
Probab=81.03 E-value=57 Score=32.03 Aligned_cols=136 Identities=15% Similarity=0.067 Sum_probs=74.5
Q ss_pred EEeeecCCCCCCC-CCHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCCCHHH
Q 018253 63 ITAIKTPYLPDGR-FDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTRE 141 (359)
Q Consensus 63 ~~al~TPF~~dg~-ID~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~st~~ 141 (359)
+|-++.|++ .|+ .-.+-.++++.-..+.|+.-- .|+.+= .+...|..+-.+.+.+. ...+|+++.++.....+
T Consensus 54 ~Pi~iaaMt-Gg~~~~~~in~~La~~a~~~g~~~~--~Gs~~~--~~~~~~~~~~~~~vr~~-~~~~p~i~nl~~~~~~~ 127 (333)
T TIGR02151 54 APFYINAMT-GGSEEAGKINRNLARAARELGIPMG--VGSQRA--ALKDPETADTFEVVREE-APNGPLIANIGAPQLVE 127 (333)
T ss_pred CCEEEeCCC-CCchhHHHHHHHHHHHHHHcCCCeE--EcCchh--hccChhhHhHHHHHHHh-CCCCcEEeecCchhhcc
Confidence 455566665 344 222235666666666776532 344221 23334444334555554 55789999988654432
Q ss_pred --HHHHHHHHHhCCCCEEEEcCCCCC-------CCCHHHHHHHHHHHHhc--CCeEEEeCCCCCCCCCCHHHHHHHhc
Q 018253 142 --AIHATEQGFAVGMHAALHINPYYG-------KTSLEGLISHFDSVLSM--GPTIIYNVPSRTGQDIPPRVIHTMAQ 208 (359)
Q Consensus 142 --ai~la~~a~~~Gadav~v~pP~y~-------~~s~~~l~~yf~~Ia~a--~PiiiYn~P~~tg~~ls~e~l~~La~ 208 (359)
.-+..+..+.++||++-+--+... ..+.+.+.+.++.|.+. .||++=-. |..++.++.++|.+
T Consensus 128 ~~~~~~~~~i~~i~adal~i~ln~~q~~~~p~g~~~f~~~le~i~~i~~~~~vPVivK~~----g~g~~~~~a~~L~~ 201 (333)
T TIGR02151 128 GGPEEAQEAIDMIEADALAIHLNVLQELVQPEGDRNFKGWLEKIAEICSQLSVPVIVKEV----GFGISKEVAKLLAD 201 (333)
T ss_pred ccHHHHHHHHHHhcCCCEEEcCcccccccCCCCCcCHHHHHHHHHHHHHhcCCCEEEEec----CCCCCHHHHHHHHH
Confidence 222333334457777755432111 11234555777777775 69987643 44578888888865
No 349
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=80.90 E-value=16 Score=33.47 Aligned_cols=69 Identities=16% Similarity=0.118 Sum_probs=33.2
Q ss_pred HHHHHHHHHHhCCCCEEEEcCCCCCCCCHHH-HHHHHHHHHhc--CCeEEEeCCCCCCCCCCHHHHHHHhcCCCeEEEe
Q 018253 141 EAIHATEQGFAVGMHAALHINPYYGKTSLEG-LISHFDSVLSM--GPTIIYNVPSRTGQDIPPRVIHTMAQSPNLAGVK 216 (359)
Q Consensus 141 ~ai~la~~a~~~Gadav~v~pP~y~~~s~~~-l~~yf~~Ia~a--~PiiiYn~P~~tg~~ls~e~l~~La~~pnivGiK 216 (359)
+..++++.+++.|++.++++.=.-. .+..+ =.+.++++.+. .|++. + |---+++.+.++.+..++-|+=
T Consensus 147 ~~~e~~~~~~~~g~~~ii~~~~~~~-g~~~G~d~~~i~~l~~~~~ipvia-~-----GGi~~~~di~~~~~~g~~~gv~ 218 (233)
T PRK00748 147 TAEDLAKRFEDAGVKAIIYTDISRD-GTLSGPNVEATRELAAAVPIPVIA-S-----GGVSSLDDIKALKGLGAVEGVI 218 (233)
T ss_pred CHHHHHHHHHhcCCCEEEEeeecCc-CCcCCCCHHHHHHHHHhCCCCEEE-e-----CCCCCHHHHHHHHHcCCccEEE
Confidence 3466777777777776666521110 00011 13444555544 35333 1 2234566666666554444443
No 350
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=80.85 E-value=32 Score=29.32 Aligned_cols=91 Identities=11% Similarity=0.078 Sum_probs=55.5
Q ss_pred HHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEe-cCCCCHHHHHHHHHHHHhCCCCEEEE
Q 018253 81 YDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGN-TGSNSTREAIHATEQGFAVGMHAALH 159 (359)
Q Consensus 81 l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViag-vg~~st~~ai~la~~a~~~Gadav~v 159 (359)
.+++++...+.+++-+.+....+. +...-.++++...+.-..+++|++| .......+.-+.-+.++++|+|++.-
T Consensus 43 ~e~i~~~a~~~~~d~V~lS~~~~~----~~~~~~~~~~~L~~~~~~~~~i~vGG~~~~~~~~~~~~~~~l~~~G~~~vf~ 118 (137)
T PRK02261 43 QEEFIDAAIETDADAILVSSLYGH----GEIDCRGLREKCIEAGLGDILLYVGGNLVVGKHDFEEVEKKFKEMGFDRVFP 118 (137)
T ss_pred HHHHHHHHHHcCCCEEEEcCcccc----CHHHHHHHHHHHHhcCCCCCeEEEECCCCCCccChHHHHHHHHHcCCCEEEC
Confidence 345566666777887777666663 4455566666666553445676664 33334445556666777788876632
Q ss_pred cCCCCCCCCHHHHHHHHHHHH
Q 018253 160 INPYYGKTSLEGLISHFDSVL 180 (359)
Q Consensus 160 ~pP~y~~~s~~~l~~yf~~Ia 180 (359)
...+.+++.+|.+.-+
T Consensus 119 -----~~~~~~~i~~~l~~~~ 134 (137)
T PRK02261 119 -----PGTDPEEAIDDLKKDL 134 (137)
T ss_pred -----cCCCHHHHHHHHHHHh
Confidence 1235678888877654
No 351
>KOG2335 consensus tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=80.84 E-value=9 Score=37.97 Aligned_cols=82 Identities=20% Similarity=0.141 Sum_probs=60.7
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEccCccCcCCC-CHHHHHHHHHHHHHhhCCCcEEEEecCCCCHHHHHHHHHHHHhCCC
Q 018253 76 FDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLM-SWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGM 154 (359)
Q Consensus 76 ID~~~l~~li~~li~~Gv~Gl~v~GstGE~~~L-T~~Er~~li~~~v~~~~grvpViagvg~~st~~ai~la~~a~~~Ga 154 (359)
.|.+....+.+.+.++|++=|.|=|-|-|--.+ +.--.-+-++.+++.... +|||++=+=.+.+|+-+..+ ..|+
T Consensus 152 ~d~~kTvd~ak~~e~aG~~~ltVHGRtr~~kg~~~~pad~~~i~~v~~~~~~-ipviaNGnI~~~~d~~~~~~---~tG~ 227 (358)
T KOG2335|consen 152 VDLEKTVDYAKMLEDAGVSLLTVHGRTREQKGLKTGPADWEAIKAVRENVPD-IPVIANGNILSLEDVERCLK---YTGA 227 (358)
T ss_pred CcHHHHHHHHHHHHhCCCcEEEEecccHHhcCCCCCCcCHHHHHHHHHhCcC-CcEEeeCCcCcHHHHHHHHH---HhCC
Confidence 577788888889999999999999988775543 333334556666676765 99999766667777665544 4899
Q ss_pred CEEEEcC
Q 018253 155 HAALHIN 161 (359)
Q Consensus 155 dav~v~p 161 (359)
|+||+.-
T Consensus 228 dGVM~ar 234 (358)
T KOG2335|consen 228 DGVMSAR 234 (358)
T ss_pred ceEEecc
Confidence 9999864
No 352
>cd03465 URO-D_like The URO-D _like protein superfamily includes bacterial and eukaryotic uroporphyrinogen decarboxylases (URO-D), coenzyme M methyltransferases and other putative bacterial methyltransferases. Uroporphyrinogen decarboxylase (URO-D) decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, an important branching point of the tetrapyrrole biosynthetic pathway. The methyltransferases represented here are important for ability of methanogenic organisms to use other compounds than carbon dioxide for reduction to methane.
Probab=80.83 E-value=55 Score=31.47 Aligned_cols=52 Identities=21% Similarity=0.284 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHhCCCCEEEEcCCCCCCC--CHHH----HHHHHHHHHhc-----CCeEEEeC
Q 018253 139 TREAIHATEQGFAVGMHAALHINPYYGKT--SLEG----LISHFDSVLSM-----GPTIIYNV 190 (359)
Q Consensus 139 t~~ai~la~~a~~~Gadav~v~pP~y~~~--s~~~----l~~yf~~Ia~a-----~PiiiYn~ 190 (359)
++-.+++++...++|+|.+.+.-|.-... |++. +..|++++.+. .|++++..
T Consensus 167 ~~~~~~~~~~~~~~G~d~i~i~d~~~~~~~isp~~f~e~~~p~~k~i~~~i~~~g~~~~lH~c 229 (330)
T cd03465 167 TEFIIRYADALIEAGADGIYISDPWASSSILSPEDFKEFSLPYLKKVFDAIKALGGPVIHHNC 229 (330)
T ss_pred HHHHHHHHHHHHHhCCCEEEEeCCccccCCCCHHHHHHHhhHHHHHHHHHHHHcCCceEEEEC
Confidence 55566666766677777777777654332 5433 33444555543 25555543
No 353
>PRK12344 putative alpha-isopropylmalate/homocitrate synthase family transferase; Provisional
Probab=80.75 E-value=13 Score=38.89 Aligned_cols=113 Identities=15% Similarity=0.075 Sum_probs=82.8
Q ss_pred cCCceEEeeecCCCCC-CCCCHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCC
Q 018253 58 KALRLITAIKTPYLPD-GRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGS 136 (359)
Q Consensus 58 ~~~Gi~~al~TPF~~d-g~ID~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~ 136 (359)
+-.|.-+..-.+.--| .+-|.+-+.++++.+.+.|++-+.+.-|+| .+++++-.++++.+.+.+ ++|+=++. +
T Consensus 136 k~~G~~v~~~~e~~~Da~r~d~~~l~~~~~~~~~~Gad~i~l~DTvG---~~~P~~v~~li~~l~~~~--~v~i~~H~-H 209 (524)
T PRK12344 136 KAHGREVIFDAEHFFDGYKANPEYALATLKAAAEAGADWVVLCDTNG---GTLPHEVAEIVAEVRAAP--GVPLGIHA-H 209 (524)
T ss_pred HHcCCeEEEccccccccccCCHHHHHHHHHHHHhCCCCeEEEccCCC---CcCHHHHHHHHHHHHHhc--CCeEEEEE-C
Confidence 3456544433331113 468999999999999999999999999998 589999999999988877 46666554 5
Q ss_pred CCHHHHHHHHHHHHhCCCCEEEEcCCCCC----CCCHHHHHHHH
Q 018253 137 NSTREAIHATEQGFAVGMHAALHINPYYG----KTSLEGLISHF 176 (359)
Q Consensus 137 ~st~~ai~la~~a~~~Gadav~v~pP~y~----~~s~~~l~~yf 176 (359)
++.--++..+..|.++||+.+=..---.. ..+-++++.++
T Consensus 210 ND~GlA~ANslaAi~aGa~~Vd~Tl~GlGERaGNa~lE~lv~~L 253 (524)
T PRK12344 210 NDSGCAVANSLAAVEAGARQVQGTINGYGERCGNANLCSIIPNL 253 (524)
T ss_pred CCCChHHHHHHHHHHhCCCEEEEecccccccccCcCHHHHHHHH
Confidence 78888999999999999999866543332 23445655444
No 354
>PRK10528 multifunctional acyl-CoA thioesterase I and protease I and lysophospholipase L1; Provisional
Probab=80.73 E-value=31 Score=30.63 Aligned_cols=82 Identities=11% Similarity=0.133 Sum_probs=43.3
Q ss_pred EEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCCCH----------HHHHHHHHHHHhCCCCEEEEc---CC
Q 018253 96 MIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNST----------REAIHATEQGFAVGMHAALHI---NP 162 (359)
Q Consensus 96 l~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~st----------~~ai~la~~a~~~Gadav~v~---pP 162 (359)
++-.|-+|+-.. +-.+-++..+...+.+ -|++.+|.|+. ++.-++.+.+++.|++-+++. ||
T Consensus 46 v~N~Gi~G~tt~----~~~~rl~~~l~~~~pd-~Vii~~GtND~~~~~~~~~~~~~l~~li~~~~~~~~~~ill~~~~P~ 120 (191)
T PRK10528 46 VVNASISGDTSQ----QGLARLPALLKQHQPR-WVLVELGGNDGLRGFPPQQTEQTLRQIIQDVKAANAQPLLMQIRLPA 120 (191)
T ss_pred EEecCcCcccHH----HHHHHHHHHHHhcCCC-EEEEEeccCcCccCCCHHHHHHHHHHHHHHHHHcCCCEEEEEeecCC
Confidence 777777786432 2222222333332333 35555555553 334455666667788877763 34
Q ss_pred CCCCCCHHHHHHHHHHHHhc
Q 018253 163 YYGKTSLEGLISHFDSVLSM 182 (359)
Q Consensus 163 ~y~~~s~~~l~~yf~~Ia~a 182 (359)
.|.....+.+.+.+++++++
T Consensus 121 ~~~~~~~~~~~~~~~~~a~~ 140 (191)
T PRK10528 121 NYGRRYNEAFSAIYPKLAKE 140 (191)
T ss_pred cccHHHHHHHHHHHHHHHHH
Confidence 44333335566667777765
No 355
>TIGR02082 metH 5-methyltetrahydrofolate--homocysteine methyltransferase. S-methyltransferase (MetE, EC 2.1.1.14, the cobalamin-independent methionine synthase) and betaine-homocysteine methyltransferase.
Probab=80.69 E-value=1.1e+02 Score=35.43 Aligned_cols=128 Identities=9% Similarity=0.077 Sum_probs=81.5
Q ss_pred CCCHHH----HHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhh---CCCcEEEEe-cC---------CC
Q 018253 75 RFDLEA----YDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCF---GASVKVIGN-TG---------SN 137 (359)
Q Consensus 75 ~ID~~~----l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~---~grvpViag-vg---------~~ 137 (359)
.++++. +...++.|++.|||.|++= | ..+..|-+..+..+.+.. +.++||++. +. +.
T Consensus 140 ~~t~del~~~y~eq~~~L~~~GvD~iliE-T-----i~d~~EakAal~a~~~~~~~~~~~lPv~vS~~~~d~~Gr~~~G~ 213 (1178)
T TIGR02082 140 NVTYDELVDAYTEQAKGLLDGGVDLLLIE-T-----CFDTLNAKAALFAAETVFEEKGRELPIMISGTIVDTSGRTLSGQ 213 (1178)
T ss_pred CCCHHHHHHHHHHHHHHHHhCCCCEEEEe-c-----cCCHHHHHHHHHHHHHHHhhcCCCCeEEEEEEEECCCCeeCCCC
Confidence 355554 5566888889999987752 2 235677777777766543 347899988 21 13
Q ss_pred CHHHHHHHHHHHHhCCCCEEEEcCCCCCCCCHHHHHHHHHHHHhc--CCeEEEeCCCC----CCCCCCHHHHHHHh----
Q 018253 138 STREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSM--GPTIIYNVPSR----TGQDIPPRVIHTMA---- 207 (359)
Q Consensus 138 st~~ai~la~~a~~~Gadav~v~pP~y~~~s~~~l~~yf~~Ia~a--~PiiiYn~P~~----tg~~ls~e~l~~La---- 207 (359)
+.++++... +..|++++-+= =...++.+..+.+.+++. .|+++|-+-+. ..++.+|+.+.+..
T Consensus 214 ~~~~~~~~l---~~~~~~avGlN----Cs~gP~~m~~~l~~l~~~~~~pi~vyPNAGlP~~~~~yd~~p~~~a~~~~~~~ 286 (1178)
T TIGR02082 214 TIEAFLTSL---EHAGIDMIGLN----CALGPDEMRPHLKHLSEHAEAYVSCHPNAGLPNAFGEYDLTPDELAKALADFA 286 (1178)
T ss_pred cHHHHHHHH---hcCCCCEEEeC----CCCCHHHHHHHHHHHHHhcCceEEEEeCCCCCCCCCcccCCHHHHHHHHHHHH
Confidence 444444443 45788876652 112478999999999875 69999966322 24667887665543
Q ss_pred cC--CCeEEE
Q 018253 208 QS--PNLAGV 215 (359)
Q Consensus 208 ~~--pnivGi 215 (359)
+. -||+|=
T Consensus 287 ~~ggv~IIGG 296 (1178)
T TIGR02082 287 AEGGLNIVGG 296 (1178)
T ss_pred HhCCCcEEEe
Confidence 32 466663
No 356
>PRK13475 ribulose bisphosphate carboxylase; Provisional
Probab=80.68 E-value=33 Score=35.24 Aligned_cols=94 Identities=14% Similarity=0.106 Sum_probs=66.3
Q ss_pred eeecCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEcc-CccCcCCCCHHHHHHHHHHHHHhhC---CCcEE-EEecCCCCH
Q 018253 65 AIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGG-TTGEGQLMSWDEHIMLIGHTVNCFG---ASVKV-IGNTGSNST 139 (359)
Q Consensus 65 al~TPF~~dg~ID~~~l~~li~~li~~Gv~Gl~v~G-stGE~~~LT~~Er~~li~~~v~~~~---grvpV-iagvg~~st 139 (359)
-+-|-+++.--+.-+.+.+++..+... +|=+ =-- .-........+||...+-.+++.+. |+.++ .+++++.++
T Consensus 160 L~gtiiKPklGLsp~~~a~~~ye~~~G-gD~I-KDDE~l~~q~f~p~~eRv~~~~~ai~~a~~eTG~~~~y~~NiTa~~~ 237 (443)
T PRK13475 160 IAGTIIKPKLGLRPEPFAEACYDFWLG-GDFI-KNDEPQGNQVFAPLKKTVPLVADAMKRAQDETGEAKLFSANITADDH 237 (443)
T ss_pred eEEEecCccccCCHHHHHHHHHHHHhc-CCcc-cccccccCCCCCCHHHHHHHHHHHHHHHHHhhCCceeEeccCCCCCH
Confidence 345556666558899999998877664 4521 111 2345667889999888777776542 44454 568988889
Q ss_pred HHHHHHHHHHHhC-CCC----EEEEc
Q 018253 140 REAIHATEQGFAV-GMH----AALHI 160 (359)
Q Consensus 140 ~~ai~la~~a~~~-Gad----av~v~ 160 (359)
+|.+++++.|++. |++ ++|+-
T Consensus 238 ~em~~ra~~a~e~~G~~~~~~~vmv~ 263 (443)
T PRK13475 238 YEMIARGEYILETFGENADHVAFLVD 263 (443)
T ss_pred HHHHHHHHHHHHhcCCCccceEEEEc
Confidence 9999999999997 988 55554
No 357
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=80.65 E-value=60 Score=31.98 Aligned_cols=15 Identities=7% Similarity=-0.071 Sum_probs=9.2
Q ss_pred ccccccHHHHHHHHH
Q 018253 257 VTSNLVPGMMRELMF 271 (359)
Q Consensus 257 ~~an~~P~l~~~l~~ 271 (359)
+.+|.--+.++...+
T Consensus 227 ~aGN~~~E~lv~~l~ 241 (333)
T TIGR03217 227 GAGNAPLEVFVAVLD 241 (333)
T ss_pred cccCccHHHHHHHHH
Confidence 456766676666554
No 358
>COG0413 PanB Ketopantoate hydroxymethyltransferase [Coenzyme metabolism]
Probab=80.58 E-value=17 Score=34.57 Aligned_cols=63 Identities=16% Similarity=0.208 Sum_probs=42.2
Q ss_pred eEEeeecCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCC
Q 018253 62 LITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGS 136 (359)
Q Consensus 62 i~~al~TPF~~dg~ID~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~ 136 (359)
.+...=.||-....=-.++++.-.+.+-+.|++.+-+=|+ +|-.+.++... ...+||++++|-
T Consensus 77 ~~vv~DmPF~sy~~s~~~a~~nA~r~~ke~gA~aVKlEGG---------~~~~~~i~~L~---~~gIPV~gHiGL 139 (268)
T COG0413 77 AFVVADLPFGSYEVSPEQALKNAARLMKEAGADAVKLEGG---------EEMAETIKRLT---ERGIPVMGHIGL 139 (268)
T ss_pred eeEEeCCCCcccCCCHHHHHHHHHHHHHHhCCCEEEEcCC---------HHHHHHHHHHH---HcCCceEEEecC
Confidence 5555667887544344455655555555599999999887 45555555544 456999999874
No 359
>TIGR02637 RhaS rhamnose ABC transporter, rhamnose-binding protein. This sugar-binding component of ABC transporter complexes is found in rhamnose catabolism operon contexts. Mutation of this gene in Rhizobium leguminosarum abolishes rhamnose transport and prevents growth on rhamnose as a carbon source.
Probab=80.54 E-value=21 Score=33.54 Aligned_cols=54 Identities=7% Similarity=0.089 Sum_probs=41.2
Q ss_pred ecCCCCHHHHHHHHHHHHhCCCCEEEEcCCCCCCCCHHHHHHHHHHHHhc-CCeEEEeCC
Q 018253 133 NTGSNSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSM-GPTIIYNVP 191 (359)
Q Consensus 133 gvg~~st~~ai~la~~a~~~Gadav~v~pP~y~~~s~~~l~~yf~~Ia~a-~PiiiYn~P 191 (359)
+....+.+...+..+.+.+.|+|++++.+. +.+.+...++.+.++ .|+++++.+
T Consensus 36 ~~~~~d~~~q~~~i~~l~~~~vdgiIi~~~-----~~~~~~~~l~~~~~~giPvV~~~~~ 90 (302)
T TIGR02637 36 GPTGTTAEGQIEVVNSLIAQKVDAIAISAN-----DPDALVPALKKAMKRGIKVVTWDSG 90 (302)
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCEEEEeCC-----ChHHHHHHHHHHHHCCCEEEEeCCC
Confidence 344567888889999999999999999753 345556667777666 799999864
No 360
>PRK09490 metH B12-dependent methionine synthase; Provisional
Probab=80.45 E-value=39 Score=39.14 Aligned_cols=132 Identities=10% Similarity=0.001 Sum_probs=80.9
Q ss_pred CCCHHHH----HHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHh---hCCCcEEEEecCCCC------HHH
Q 018253 75 RFDLEAY----DDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNC---FGASVKVIGNTGSNS------TRE 141 (359)
Q Consensus 75 ~ID~~~l----~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~---~~grvpViagvg~~s------t~~ 141 (359)
.++++.+ ...++.|++.|||.|++ -| ..+..|-+..+..+.+. .+.++||++..+-.. .-+
T Consensus 156 ~it~del~~~y~eQi~~L~e~GVDllli-ET-----i~d~~EakAal~a~~~~~~~~~~~lPv~vS~T~~d~~Gr~lsG~ 229 (1229)
T PRK09490 156 NVTFDELVAAYREQTRGLIEGGADLILI-ET-----IFDTLNAKAAIFAVEEVFEELGVRLPVMISGTITDASGRTLSGQ 229 (1229)
T ss_pred CCCHHHHHHHHHHHHHHHHhCCCCEEEE-ee-----eCCHHHHHHHHHHHHHHHhhcCCCCeEEEEEEEECCCCccCCCC
Confidence 4666654 45588888999998774 22 23566767777665543 234789988654211 111
Q ss_pred HH-HHHHHHHhCCCCEEEEcCCCCCCCCHHHHHHHHHHHHhc--CCeEEEeCCCC----CCCCCCHHHHHHHh----cCC
Q 018253 142 AI-HATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSM--GPTIIYNVPSR----TGQDIPPRVIHTMA----QSP 210 (359)
Q Consensus 142 ai-~la~~a~~~Gadav~v~pP~y~~~s~~~l~~yf~~Ia~a--~PiiiYn~P~~----tg~~ls~e~l~~La----~~p 210 (359)
.+ +........|++++-+= . ...++++..+.+.+++. .||.+|-|-+. ..++.+|+.+.+.. +..
T Consensus 230 ~~ea~~~~l~~~~~~avGlN--C--s~GP~~m~~~l~~l~~~~~~pi~vyPNAGlP~~~~~yd~tPe~~a~~~~~~~~~G 305 (1229)
T PRK09490 230 TTEAFWNSLRHAKPLSIGLN--C--ALGADELRPYVEELSRIADTYVSAHPNAGLPNAFGEYDETPEEMAAQIGEFAESG 305 (1229)
T ss_pred cHHHHHHHHhcCCCCEEEEc--C--CCcHHHHHHHHHHHHHhcCCeEEEEeCCCCCCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 22 22233346788766542 1 12478899999999865 69999987432 25678887766554 334
Q ss_pred --CeEEEe
Q 018253 211 --NLAGVK 216 (359)
Q Consensus 211 --nivGiK 216 (359)
||+|=-
T Consensus 306 ~v~IIGGC 313 (1229)
T PRK09490 306 FLNIVGGC 313 (1229)
T ss_pred CCCEEEec
Confidence 666643
No 361
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=80.07 E-value=5.1 Score=38.02 Aligned_cols=85 Identities=12% Similarity=0.037 Sum_probs=58.4
Q ss_pred CCCcEEEEecCCCCH--------HHHHHHHHHHHhCCCCEEEE-cCCCCCCCCHHHHHHHHHHHHhc--CCeEEEeCCCC
Q 018253 125 GASVKVIGNTGSNST--------REAIHATEQGFAVGMHAALH-INPYYGKTSLEGLISHFDSVLSM--GPTIIYNVPSR 193 (359)
Q Consensus 125 ~grvpViagvg~~st--------~~ai~la~~a~~~Gadav~v-~pP~y~~~s~~~l~~yf~~Ia~a--~PiiiYn~P~~ 193 (359)
.+++|||+-+-..|. .+..++|+.+++.||+++.+ +-|.||..+ .++.+.+.+. .||+..|
T Consensus 47 ~~~~~vIaeik~~sps~g~i~~~~~~~~~A~~~~~~GA~aisvlte~~~f~g~----~~~l~~v~~~v~iPvl~kd---- 118 (260)
T PRK00278 47 AGKPAVIAEVKKASPSKGVIREDFDPVEIAKAYEAGGAACLSVLTDERFFQGS----LEYLRAARAAVSLPVLRKD---- 118 (260)
T ss_pred cCCCeEEEEeeCCCCCCCccCCCCCHHHHHHHHHhCCCeEEEEecccccCCCC----HHHHHHHHHhcCCCEEeee----
Confidence 457999998744333 24689999999999999976 447788777 5666667665 6999765
Q ss_pred CCCCCCHHHHHHHhcC-CCeEEEeccC
Q 018253 194 TGQDIPPRVIHTMAQS-PNLAGVKECV 219 (359)
Q Consensus 194 tg~~ls~e~l~~La~~-pnivGiK~ss 219 (359)
+-+++-.+.+..+. -.++-+=.+.
T Consensus 119 --fi~~~~qi~~a~~~GAD~VlLi~~~ 143 (260)
T PRK00278 119 --FIIDPYQIYEARAAGADAILLIVAA 143 (260)
T ss_pred --ecCCHHHHHHHHHcCCCEEEEEecc
Confidence 34556566665543 4555555544
No 362
>smart00518 AP2Ec AP endonuclease family 2. These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites
Probab=79.94 E-value=52 Score=30.67 Aligned_cols=125 Identities=11% Similarity=0.024 Sum_probs=76.6
Q ss_pred HHHHHHHHHHHCCCCEEEEccCccCcC---CCCHHHHHHHHHHHHHhhCCCcEEEEe------cCCCC-------HHHHH
Q 018253 80 AYDDLVNMQIVNGAEGMIVGGTTGEGQ---LMSWDEHIMLIGHTVNCFGASVKVIGN------TGSNS-------TREAI 143 (359)
Q Consensus 80 ~l~~li~~li~~Gv~Gl~v~GstGE~~---~LT~~Er~~li~~~v~~~~grvpViag------vg~~s-------t~~ai 143 (359)
.+..-+++..+.|.+++=+......++ .+|.++..++-+...+ . .+++.+. ..+.+ .+...
T Consensus 11 ~~~~~~~~~~~~G~~~vel~~~~~~~~~~~~~~~~~~~~l~~~~~~-~--gl~ls~h~p~~~nl~s~d~~~r~~~~~~l~ 87 (273)
T smart00518 11 GLYKAFIEAVDIGARSFQLFLGNPRSWKGVRLSEETAEKFKEALKE-N--NIDVSVHAPYLINLASPDKEKVEKSIERLI 87 (273)
T ss_pred cHhHHHHHHHHcCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHH-c--CCCEEEECCceecCCCCCHHHHHHHHHHHH
Confidence 366778889999999986666555554 4788777776665443 2 2444442 22221 12234
Q ss_pred HHHHHHHhCCCCEEEEcCCCCCCCCHH----HHHHHHHHHHhc---CCeEEEeCCCCC-CCCCCHHHHHHHh
Q 018253 144 HATEQGFAVGMHAALHINPYYGKTSLE----GLISHFDSVLSM---GPTIIYNVPSRT-GQDIPPRVIHTMA 207 (359)
Q Consensus 144 ~la~~a~~~Gadav~v~pP~y~~~s~~----~l~~yf~~Ia~a---~PiiiYn~P~~t-g~~ls~e~l~~La 207 (359)
+.++.|+++|++.+.+.+.++...+.+ .+.+.++++++. ..+.+=|.|... ...-+++.+.++.
T Consensus 88 ~~i~~A~~lGa~~vv~h~g~~~~~~~e~~~~~~~~~l~~l~~~~~gv~l~lEn~~~~~~~~~~~~~~~~~ll 159 (273)
T smart00518 88 DEIKRCEELGIKALVFHPGSYLKQSKEEALNRIIESLNEVIDETKGVVILLETTAGKGSQIGSTFEDLKEII 159 (273)
T ss_pred HHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHHHHHHhccCCcEEEEeccCCCCCccCCCHHHHHHHH
Confidence 466778889999888877666433332 344566666653 467777766432 2223677777776
No 363
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=79.89 E-value=63 Score=31.58 Aligned_cols=85 Identities=19% Similarity=0.173 Sum_probs=44.3
Q ss_pred CCCccccccccCCcccccCCceEEeeecCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEccCccC---------cCCCCHH
Q 018253 41 LPMRSFEVKNRTSAEDIKALRLITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGE---------GQLMSWD 111 (359)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~Gi~~al~TPF~~dg~ID~~~l~~li~~li~~Gv~Gl~v~GstGE---------~~~LT~~ 111 (359)
+-.....+|||+- .+|+.+-+..||.+..+-+..+-+ ..+.|+ |+++.|.+.- ...+..+
T Consensus 5 ~~ig~~~l~NRi~---------~~pm~~~~~~~g~~~~~~~~~y~~-rA~gg~-glii~~~~~v~~~~~~~~~~~~~~~d 73 (336)
T cd02932 5 LTLRGVTLKNRIV---------VSPMCQYSAEDGVATDWHLVHYGS-RALGGA-GLVIVEATAVSPEGRITPGDLGLWND 73 (336)
T ss_pred eeECCEEEeccCE---------EcccccCcCCCCCCCHHHHHHHHH-HHcCCC-cEEEEcceEECCCcCCCCCceeecCH
Confidence 3344555666654 344443333477766555544444 334454 4555554321 1235566
Q ss_pred HHHHHHHHHHHhhC-CCcEEEEecCC
Q 018253 112 EHIMLIGHTVNCFG-ASVKVIGNTGS 136 (359)
Q Consensus 112 Er~~li~~~v~~~~-grvpViagvg~ 136 (359)
+...-++.+++.+. ...+++++..+
T Consensus 74 ~~~~~~~~l~~~vh~~G~~~~~QL~H 99 (336)
T cd02932 74 EQIEALKRIVDFIHSQGAKIGIQLAH 99 (336)
T ss_pred HHHHHHHHHHHHHHhcCCcEEEEccC
Confidence 77666666666542 23567777644
No 364
>cd06291 PBP1_Qymf_like Ligand binding domain of the lacI-like transcription regulator from a novel metal-reducing bacterium Alkaliphilus Metalliredigens (strain Qymf) and its close homologs. This group includes the ligand binding domain of the lacI-like transcription regulator from a novel metal-reducing bacterium Alkaliphilus Metalliredigens (strain Qymf) and its close homologs. Qymf is a strict anaerobe that could be grown in the presence of borax and its cells are straight rods that produce endospores. This group is a member of the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription
Probab=79.70 E-value=43 Score=30.41 Aligned_cols=124 Identities=17% Similarity=0.142 Sum_probs=69.8
Q ss_pred CHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEE-e---------cCCCCHHHHHHHH
Q 018253 77 DLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIG-N---------TGSNSTREAIHAT 146 (359)
Q Consensus 77 D~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpVia-g---------vg~~st~~ai~la 146 (359)
|.+.....++.++..+++|+++.+...+ . +.+. ...+||+. + |+..........+
T Consensus 40 ~~~~~~~~i~~~~~~~~dgiii~~~~~~-----~-------~~~~---~~gipvv~~~~~~~~~~~~V~~d~~~~g~~~~ 104 (265)
T cd06291 40 DPEKEREYLEMLRQNQVDGIIAGTHNLG-----I-------EEYE---NIDLPIVSFDRYLSENIPIVSSDNYEGGRLAA 104 (265)
T ss_pred cHHHHHHHHHHHHHcCCCEEEEecCCcC-----H-------HHHh---cCCCCEEEEeCCCCCCCCeEeechHHHHHHHH
Confidence 3456678899999999999999876422 0 1111 22355432 2 3444566677888
Q ss_pred HHHHhCCCCEEEEcCCCCC-CCCHHHHHHHHHHHHh-c-CC--eEEEeCCCCCCCCC--CHHHHHHHh-cCCCeEEEecc
Q 018253 147 EQGFAVGMHAALHINPYYG-KTSLEGLISHFDSVLS-M-GP--TIIYNVPSRTGQDI--PPRVIHTMA-QSPNLAGVKEC 218 (359)
Q Consensus 147 ~~a~~~Gadav~v~pP~y~-~~s~~~l~~yf~~Ia~-a-~P--iiiYn~P~~tg~~l--s~e~l~~La-~~pnivGiK~s 218 (359)
++..+.|...+.++..... .....+-.+-|++..+ . .+ .+.+... .+. .-+.+.++. +++.+.++=-+
T Consensus 105 ~~l~~~g~~~i~~i~~~~~~~~~~~~r~~gf~~~l~~~~~~~~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~ai~~~ 180 (265)
T cd06291 105 EELIERGCKHIAHIGGPNNTVSPTNLRYEGFLDVLKENGLEVRIIEIQEN----FDDAEKKEEIKELLEEYPDIDGIFAS 180 (265)
T ss_pred HHHHHcCCcEEEEEccCcccccchHHHHHHHHHHHHHcCCCCChheeecc----ccchHHHHHHHHHHhCCCCCCEEEEC
Confidence 8888889988887755443 2333344444444443 3 22 2222211 111 234566655 56666666544
Q ss_pred C
Q 018253 219 V 219 (359)
Q Consensus 219 s 219 (359)
+
T Consensus 181 ~ 181 (265)
T cd06291 181 N 181 (265)
T ss_pred C
Confidence 3
No 365
>TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist. This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase.
Probab=79.62 E-value=26 Score=33.72 Aligned_cols=128 Identities=15% Similarity=0.204 Sum_probs=0.0
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCC-CcEEEEecCC------------CCHHHH
Q 018253 76 FDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGA-SVKVIGNTGS------------NSTREA 142 (359)
Q Consensus 76 ID~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~g-rvpViagvg~------------~st~~a 142 (359)
+|.......++..++.|++.+.+=++ .|+.+|-.++.+.+++.+.. .+.|=+=+|. .+..+.
T Consensus 81 lDH~~~~e~i~~ai~~Gf~sVmid~s-----~l~~~eni~~t~~v~~~a~~~gv~Ve~ElG~~gg~ed~~~g~~~~~t~~ 155 (282)
T TIGR01859 81 LDHGSSYESCIKAIKAGFSSVMIDGS-----HLPFEENLALTKKVVEIAHAKGVSVEAELGTLGGIEDGVDEKEAELADP 155 (282)
T ss_pred CCCCCCHHHHHHHHHcCCCEEEECCC-----CCCHHHHHHHHHHHHHHHHHcCCEEEEeeCCCcCccccccccccccCCH
Q ss_pred HHHHHHHHhCCCCEEEEc----CCCCCCCCHHHHHHHHHHHHhc--CCeEEEeCCCCCCCCCCHHHHHHHhcCCCeEEE
Q 018253 143 IHATEQGFAVGMHAALHI----NPYYGKTSLEGLISHFDSVLSM--GPTIIYNVPSRTGQDIPPRVIHTMAQSPNLAGV 215 (359)
Q Consensus 143 i~la~~a~~~Gadav~v~----pP~y~~~s~~~l~~yf~~Ia~a--~PiiiYn~P~~tg~~ls~e~l~~La~~pnivGi 215 (359)
-+..+..++.|+|.+.+. .+.|.+...-+ ++..++|.+. .|+++.. |..++.+.+.++.+. ++.++
T Consensus 156 eea~~f~~~tgvD~Lavs~Gt~hg~~~~~~~l~-~e~L~~i~~~~~iPlv~hG-----gSGi~~e~i~~~i~~-Gi~ki 227 (282)
T TIGR01859 156 DEAEQFVKETGVDYLAAAIGTSHGKYKGEPGLD-FERLKEIKELTNIPLVLHG-----ASGIPEEQIKKAIKL-GIAKI 227 (282)
T ss_pred HHHHHHHHHHCcCEEeeccCccccccCCCCccC-HHHHHHHHHHhCCCEEEEC-----CCCCCHHHHHHHHHc-CCCEE
No 366
>PF01487 DHquinase_I: Type I 3-dehydroquinase; InterPro: IPR001381 3-dehydroquinate dehydratase (4.2.1.10 from EC), or dehydroquinase, catalyzes the conversion of 3-dehydroquinate into 3-dehydroshikimate. It is the third step in the shikimate pathway for the biosynthesis of aromatic amino acids from chorismate. Two classes of dehydroquinases exist, known as types I and II. The best studied type I enzyme is from Escherichia coli (gene aroD) and related bacteria where it is a homodimeric protein. In fungi, dehydroquinase is part of a multifunctional enzyme which catalyzes five consecutive steps in the shikimate pathway. A histidine [] is involved in the catalytic mechanism.; GO: 0003855 3-dehydroquinate dehydratase activity; PDB: 2O7Q_A 2GPT_A 2O7S_A 1SFL_A 2OCZ_A 2OX1_C 1GQN_A 1QFE_B 1L9W_D 3L9C_A ....
Probab=79.44 E-value=13 Score=34.16 Aligned_cols=103 Identities=19% Similarity=0.096 Sum_probs=59.7
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecC----CCCHHHHHHHHHHHH
Q 018253 75 RFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTG----SNSTREAIHATEQGF 150 (359)
Q Consensus 75 ~ID~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg----~~st~~ai~la~~a~ 150 (359)
+++.+...++++.+++.|++.+=+ |...+...... ......++.+||+.-- ..+.++..++.+.++
T Consensus 71 ~~~~~~~~~ll~~~~~~~~d~iDi-----E~~~~~~~~~~-----~~~~~~~~~~iI~S~H~f~~tp~~~~l~~~~~~~~ 140 (224)
T PF01487_consen 71 QGSEEEYLELLERAIRLGPDYIDI-----ELDLFPDDLKS-----RLAARKGGTKIILSYHDFEKTPSWEELIELLEEMQ 140 (224)
T ss_dssp SS-HHHHHHHHHHHHHHTSSEEEE-----EGGCCHHHHHH-----HHHHHHTTSEEEEEEEESS---THHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEE-----EcccchhHHHH-----HHHHhhCCCeEEEEeccCCCCCCHHHHHHHHHHHH
Confidence 467788888888888888887776 44433333322 1122335677887543 566777888888888
Q ss_pred hCCCCEEEEcCCCCCCCCHHH---HHHHHHHHHhc--CCeEEEeC
Q 018253 151 AVGMHAALHINPYYGKTSLEG---LISHFDSVLSM--GPTIIYNV 190 (359)
Q Consensus 151 ~~Gadav~v~pP~y~~~s~~~---l~~yf~~Ia~a--~PiiiYn~ 190 (359)
+.|||.+=+..+.- +.++ +..+.....+. .|++.|+.
T Consensus 141 ~~gadivKia~~~~---~~~D~~~l~~~~~~~~~~~~~p~i~~~M 182 (224)
T PF01487_consen 141 ELGADIVKIAVMAN---SPEDVLRLLRFTKEFREEPDIPVIAISM 182 (224)
T ss_dssp HTT-SEEEEEEE-S---SHHHHHHHHHHHHHHHHHTSSEEEEEEE
T ss_pred hcCCCeEEEEeccC---CHHHHHHHHHHHHHHhhccCCcEEEEEc
Confidence 88988774442222 3344 33333333332 58888875
No 367
>PLN02540 methylenetetrahydrofolate reductase
Probab=79.43 E-value=63 Score=34.29 Aligned_cols=129 Identities=10% Similarity=0.192 Sum_probs=79.5
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEccC----ccCcC---CCCHHHHHHHHHHHHHhhCCCcEE-EEec-------------
Q 018253 76 FDLEAYDDLVNMQIVNGAEGMIVGGT----TGEGQ---LMSWDEHIMLIGHTVNCFGASVKV-IGNT------------- 134 (359)
Q Consensus 76 ID~~~l~~li~~li~~Gv~Gl~v~Gs----tGE~~---~LT~~Er~~li~~~v~~~~grvpV-iagv------------- 134 (359)
.+.+.+...++.+-+.||+.|+++.. .|+.+ .--.+.-.+|++.+.+..+...-+ ++|-
T Consensus 70 ~n~~~L~~~L~~a~~~GIrNILALrGDpp~~~d~~~~~~g~F~~A~dLV~~Ir~~~gd~f~IgVAGYPEgHpe~~~~~~~ 149 (565)
T PLN02540 70 MPVEKIDHALETIKSNGIQNILALRGDPPHGQDKFVQVEGGFACALDLVKHIRSKYGDYFGITVAGYPEAHPDVIGGDGL 149 (565)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCcCCCCCCcccHHHHHHHHHHhCCCCceEEEeCCCCCCCcccccccc
Confidence 55779999999999999999877653 22211 011123566777766643221111 1111
Q ss_pred -CCCCHHHHHHHHHHHHhCCCCEEEEcCCCCCCCCHHHHHHHHHHHHhc---CCeEEEeCC-----------CCCCCCCC
Q 018253 135 -GSNSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSM---GPTIIYNVP-----------SRTGQDIP 199 (359)
Q Consensus 135 -g~~st~~ai~la~~a~~~Gadav~v~pP~y~~~s~~~l~~yf~~Ia~a---~PiiiYn~P-----------~~tg~~ls 199 (359)
...+.+.-++..+.=.++||| .+++-++| +.+.+.+|.+.+.+. +||+.==.| ..+|+.++
T Consensus 150 ~~~~~~~~dl~~Lk~KvdAGAd-FiITQlfF---D~d~f~~f~~~~r~~Gi~vPIipGImPI~S~k~l~r~~~l~Gi~IP 225 (565)
T PLN02540 150 ATPEAYQKDLAYLKEKVDAGAD-LIITQLFY---DTDIFLKFVNDCRQIGITCPIVPGIMPINNYKGFLRMTGFCKTKIP 225 (565)
T ss_pred cCCCChHHHHHHHHHHHHcCCC-EEeecccc---CHHHHHHHHHHHHhcCCCCCEEeeecccCCHHHHHHHHhccCCcCC
Confidence 112233456666666678999 45555777 667788888888765 466532222 24689999
Q ss_pred HHHHHHHhc
Q 018253 200 PRVIHTMAQ 208 (359)
Q Consensus 200 ~e~l~~La~ 208 (359)
.+++++|.+
T Consensus 226 ~~i~~rLe~ 234 (565)
T PLN02540 226 AEITAALEP 234 (565)
T ss_pred HHHHHHHHh
Confidence 999999974
No 368
>COG2070 Dioxygenases related to 2-nitropropane dioxygenase [General function prediction only]
Probab=79.43 E-value=3.7 Score=40.57 Aligned_cols=120 Identities=12% Similarity=0.142 Sum_probs=73.2
Q ss_pred HHHHHHHHHCCCCEEEEccCccCcCCCC---HHHHHHHHHHHHHhhCCCcEEEEecCCCCHHHHHHHHHHHHhCCCCEEE
Q 018253 82 DDLVNMQIVNGAEGMIVGGTTGEGQLMS---WDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAAL 158 (359)
Q Consensus 82 ~~li~~li~~Gv~Gl~v~GstGE~~~LT---~~Er~~li~~~v~~~~grvpViagvg~~st~~ai~la~~a~~~Gadav~ 158 (359)
.++..+..+.|+|++++-|..+=++.=+ .-.-..|+..+++.+++ +|||+. |+-...+. +..|..+|||+|.
T Consensus 137 ~~~A~~~~~~G~d~vI~~g~eAGGH~g~~~~~~~t~~Lv~ev~~~~~~-iPViAA-GGI~dg~~---i~AAlalGA~gVq 211 (336)
T COG2070 137 VREALKAERAGADAVIAQGAEAGGHRGGVDLEVSTFALVPEVVDAVDG-IPVIAA-GGIADGRG---IAAALALGADGVQ 211 (336)
T ss_pred HHHHHHHHhCCCCEEEecCCcCCCcCCCCCCCccHHHHHHHHHHHhcC-CCEEEe-cCccChHH---HHHHHHhccHHHH
Confidence 4677788899999999877633333211 22236788888888865 999982 22223333 3455669999999
Q ss_pred EcCCCCCCCCHHHHHHHHHHHHh-c--CCeEEEeCCC-CCCCCCCHHHHHHHh
Q 018253 159 HINPYYGKTSLEGLISHFDSVLS-M--GPTIIYNVPS-RTGQDIPPRVIHTMA 207 (359)
Q Consensus 159 v~pP~y~~~s~~~l~~yf~~Ia~-a--~PiiiYn~P~-~tg~~ls~e~l~~La 207 (359)
+-+.+.... +...-+.|++..- + ..+++-+.+. +....+...+.++..
T Consensus 212 ~GT~Fl~t~-Ea~a~~~~K~~l~~a~~~Dtv~~~~~~G~paR~i~~~~~~~~~ 263 (336)
T COG2070 212 MGTRFLATK-EADASDAYKQALLQATEDDTVLTKSFTGKPARVLRNPLTEEYE 263 (336)
T ss_pred hhhhhhccc-ccCCCHHHHHHHhcccccCeEEEcccCCCcchhhCcHHHHhhh
Confidence 998877532 3345577777754 3 4666655431 122234445555544
No 369
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=79.43 E-value=58 Score=30.90 Aligned_cols=178 Identities=16% Similarity=0.151 Sum_probs=105.1
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCCEEEEccCccC----cC------------CCCHHHHHHHHHHHHHhhCCCcEEEE
Q 018253 69 PYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGE----GQ------------LMSWDEHIMLIGHTVNCFGASVKVIG 132 (359)
Q Consensus 69 PF~~dg~ID~~~l~~li~~li~~Gv~Gl~v~GstGE----~~------------~LT~~Er~~li~~~v~~~~grvpVia 132 (359)
||---|.-|++...+.++.+.+.|+|-|=++=-.+. ++ -+|.++-.++++.+.+. .-++|+++
T Consensus 16 ~yi~aG~P~~~~~~~~~~~l~~~Gad~iElGiPfSDP~aDGpvIq~a~~~AL~~G~~~~~~~~~~~~~r~~-~~~~p~vl 94 (258)
T PRK13111 16 PYITAGDPDLETSLEIIKALVEAGADIIELGIPFSDPVADGPVIQAASLRALAAGVTLADVFELVREIREK-DPTIPIVL 94 (258)
T ss_pred EEEeCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCcccCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhc-CCCCCEEE
Confidence 344467789999999999999999997755433321 11 13444445555555422 23578765
Q ss_pred ecCCCCHHH--HHHHHHHHHhCCCCEEEEcCCCCCCCCHHHHHHHHHHHHhc-CCeEEEeCCCCCCCCCCHHHHHHHhc-
Q 018253 133 NTGSNSTRE--AIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSM-GPTIIYNVPSRTGQDIPPRVIHTMAQ- 208 (359)
Q Consensus 133 gvg~~st~~--ai~la~~a~~~Gadav~v~pP~y~~~s~~~l~~yf~~Ia~a-~PiiiYn~P~~tg~~ls~e~l~~La~- 208 (359)
=...+..-. .=++.+.++++|+|++++ |- ...++..+|.....+. +..+..=.| .-+.+.++++++
T Consensus 95 m~Y~N~i~~~G~e~f~~~~~~aGvdGvii--pD---Lp~ee~~~~~~~~~~~gl~~I~lvap-----~t~~eri~~i~~~ 164 (258)
T PRK13111 95 MTYYNPIFQYGVERFAADAAEAGVDGLII--PD---LPPEEAEELRAAAKKHGLDLIFLVAP-----TTTDERLKKIASH 164 (258)
T ss_pred EecccHHhhcCHHHHHHHHHHcCCcEEEE--CC---CCHHHHHHHHHHHHHcCCcEEEEeCC-----CCCHHHHHHHHHh
Confidence 554443222 235788889999999999 32 2457888888877765 444444444 345778888874
Q ss_pred CCCeEEE---eccCch--------h----hHhhhhCCceEEEecCCc---hhhhhhhhcCCceeeccccc
Q 018253 209 SPNLAGV---KECVGN--------D----RVEHYTGNGIVVWSGNDD---QCHDARWNHGATGVISVTSN 260 (359)
Q Consensus 209 ~pnivGi---K~ss~d--------~----~l~~~~~~~~~v~~G~d~---~~~~~~l~~Ga~G~is~~an 260 (359)
.+.++.+ .-.+|. . ++++.. +..++.|..- .-... +..++||++.|++.
T Consensus 165 s~gfIY~vs~~GvTG~~~~~~~~~~~~i~~vk~~~--~~pv~vGfGI~~~e~v~~-~~~~ADGviVGSai 231 (258)
T PRK13111 165 ASGFVYYVSRAGVTGARSADAADLAELVARLKAHT--DLPVAVGFGISTPEQAAA-IAAVADGVIVGSAL 231 (258)
T ss_pred CCCcEEEEeCCCCCCcccCCCccHHHHHHHHHhcC--CCcEEEEcccCCHHHHHH-HHHhCCEEEEcHHH
Confidence 4565544 221221 1 122322 3445555431 22333 34469999988653
No 370
>cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE). This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis.
Probab=79.25 E-value=46 Score=29.59 Aligned_cols=168 Identities=10% Similarity=0.018 Sum_probs=87.9
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEccCccCc---CCCCHHHHHHHHHHHHHhhCCCcEEEEecCCCCHHHHHHHHHHHHh
Q 018253 75 RFDLEAYDDLVNMQIVNGAEGMIVGGTTGEG---QLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFA 151 (359)
Q Consensus 75 ~ID~~~l~~li~~li~~Gv~Gl~v~GstGE~---~~LT~~Er~~li~~~v~~~~grvpViagvg~~st~~ai~la~~a~~ 151 (359)
.+|+..+.+.++.+++.|++.+=+----|.+ ..++. ++++...+.. ..++.+.+..++. .+.++.+.+
T Consensus 8 ~~d~~~~~~~~~~~~~~G~~~i~l~~~d~~~~~~~~~~~----~~~~~i~~~~--~~~~~v~l~~~d~---~~~~~~~~~ 78 (211)
T cd00429 8 SADFANLGEELKRLEEAGADWIHIDVMDGHFVPNLTFGP----PVVKALRKHT--DLPLDVHLMVENP---ERYIEAFAK 78 (211)
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEEecccCCCCCccccCH----HHHHHHHhhC--CCcEEEEeeeCCH---HHHHHHHHH
Confidence 5899999999999999999987652111111 11222 3444444444 2455555555555 345777779
Q ss_pred CCCCEEEEcCCCCCCCCHHHHHHHHHHHHhc-CCeEEEeCCCCCCCCCCHHHHHHHhcCCCeEEE--eccC--ch---h-
Q 018253 152 VGMHAALHINPYYGKTSLEGLISHFDSVLSM-GPTIIYNVPSRTGQDIPPRVIHTMAQSPNLAGV--KECV--GN---D- 222 (359)
Q Consensus 152 ~Gadav~v~pP~y~~~s~~~l~~yf~~Ia~a-~PiiiYn~P~~tg~~ls~e~l~~La~~pnivGi--K~ss--~d---~- 222 (359)
+|+|++.+.-- .+ ++..++.+.+... .-+++--.|. -+.+.+.++.+....+++ .+.+ +. .
T Consensus 79 ~g~dgv~vh~~----~~-~~~~~~~~~~~~~~~~~g~~~~~~-----~~~~~~~~~~~~~d~i~~~~~~~g~tg~~~~~~ 148 (211)
T cd00429 79 AGADIITFHAE----AT-DHLHRTIQLIKELGMKAGVALNPG-----TPVEVLEPYLDEVDLVLVMSVNPGFGGQKFIPE 148 (211)
T ss_pred cCCCEEEECcc----ch-hhHHHHHHHHHHCCCeEEEEecCC-----CCHHHHHHHHhhCCEEEEEEECCCCCCcccCHH
Confidence 99999876421 11 3344555544433 2222211121 135666766654454422 1111 11 1
Q ss_pred ---hH---hhhhC---CceEE--EecCCchhhhhhhhcCCceeecccccc
Q 018253 223 ---RV---EHYTG---NGIVV--WSGNDDQCHDARWNHGATGVISVTSNL 261 (359)
Q Consensus 223 ---~l---~~~~~---~~~~v--~~G~d~~~~~~~l~~Ga~G~is~~an~ 261 (359)
.+ ++..+ .++.+ -.|-...-.......|++|++.+.+-+
T Consensus 149 ~~~~i~~~~~~~~~~~~~~pi~v~GGI~~env~~~~~~gad~iivgsai~ 198 (211)
T cd00429 149 VLEKIRKLRELIPENNLNLLIEVDGGINLETIPLLAEAGADVLVAGSALF 198 (211)
T ss_pred HHHHHHHHHHHHHhcCCCeEEEEECCCCHHHHHHHHHcCCCEEEECHHHh
Confidence 12 22221 12333 335544444444568999999886644
No 371
>PF01884 PcrB: PcrB family; InterPro: IPR008205 This entry represents geranylgeranylglyceryl phosphate (GGGP) synthase, which is a prenyltransferase that catalyses the transfer of the geranylgeranyl moiety of geranylgeranyl diphosphate (GGPP) to the C3 hydroxyl of sn-glycerol-1-phosphate (G1P). This reaction is the first ether-bond-formation step in the biosynthesis of archaeal membrane lipids. This entry also matches putative glycerol-1-phosphate prenyltransferases that may catalyse the transfer of a prenyl moiety to sn-glycerol-1-phosphate (G1P) []. Some of the prokaryotic proteins in this family are related to pcrB. The Staphylococcus aureus chromosomal gene pcrA encodes a protein with significant similarity (40% identity) to two Escherichia coli helicases: the helicase II encoded by the uvrD gene and the Rep helicase. PcrB gene seems to belong to an operon containing at least one other gene, pcrBA, downstream from pcrB []. The PcrB proteins often contain an FMN binding site although the function of these proteins is still unknown.; GO: 0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups; PDB: 1VIZ_A 2F6X_B 2F6U_B 3VKD_A 3VKA_A 3VK5_B 3VKC_B 3VKB_B.
Probab=79.25 E-value=4.2 Score=38.06 Aligned_cols=174 Identities=21% Similarity=0.211 Sum_probs=87.4
Q ss_pred CCceEEeeecCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCCC
Q 018253 59 ALRLITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNS 138 (359)
Q Consensus 59 ~~Gi~~al~TPF~~dg~ID~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~s 138 (359)
.+++...++=|.+ .... ..++.+.+.|.|.|+++||+ ..-|.++-.++++.. ..+||+.-.|+.+
T Consensus 6 ~~~~h~~liDPdK---~~~~----~~~~~~~~~gtDai~VGGS~---~~~~~d~vv~~ik~~-----~~lPvilfPg~~~ 70 (230)
T PF01884_consen 6 WRKLHATLIDPDK---PNPE----EALEAACESGTDAIIVGGSD---TGVTLDNVVALIKRV-----TDLPVILFPGSPS 70 (230)
T ss_dssp ----EEEEE-TTS---S-HH----HHHHHHHCTT-SEEEEE-ST---HCHHHHHHHHHHHHH-----SSS-EEEETSTCC
T ss_pred cccceEEEECCCC---CCcH----HHHHHHHhcCCCEEEECCCC---CccchHHHHHHHHhc-----CCCCEEEeCCChh
Confidence 3445666665543 3333 33444489999999999999 222455554444433 5799999887654
Q ss_pred HHHHHHHHHHHHhCCCCEEEEc------CCCCCCCCHHHHHHHHHHHHhc-CCe--EEEeCCCC----CC---CCCCHHH
Q 018253 139 TREAIHATEQGFAVGMHAALHI------NPYYGKTSLEGLISHFDSVLSM-GPT--IIYNVPSR----TG---QDIPPRV 202 (359)
Q Consensus 139 t~~ai~la~~a~~~Gadav~v~------pP~y~~~s~~~l~~yf~~Ia~a-~Pi--iiYn~P~~----tg---~~ls~e~ 202 (359)
.- .-+||++++. .|+|.--.+-+-...++..... .|. ++-|.-+. ++ .+.+.+.
T Consensus 71 ~v----------s~~aDail~~svlNs~n~~~iig~~~~aa~~~~~~~~e~ip~gYivi~~g~~v~~v~~a~pi~~~~~~ 140 (230)
T PF01884_consen 71 QV----------SPGADAILFPSVLNSRNPYWIIGAQVEAAPLIKKLGLEVIPTGYIVINPGSKVARVTGARPIPLDKPE 140 (230)
T ss_dssp G------------TTSSEEEEEEETTBSSTTTTTHHHHHHHHHCHHHHCCEEEEEEEEESTTSHHHHHTTB-----SHHH
T ss_pred hc----------CcCCCEEEEEEEecCCCcchHhhHHHHHHHHHHhhcceecceEEEEECCCCceEEeecceecCCCcHH
Confidence 21 2679999886 3777644444444555555544 562 44443221 22 2344333
Q ss_pred HH---HHh-c-C-CCeEEEeccCch---h--hHhhh--hCCceEEEecCC----chhhhhhhhcCCceeeccc
Q 018253 203 IH---TMA-Q-S-PNLAGVKECVGN---D--RVEHY--TGNGIVVWSGND----DQCHDARWNHGATGVISVT 258 (359)
Q Consensus 203 l~---~La-~-~-pnivGiK~ss~d---~--~l~~~--~~~~~~v~~G~d----~~~~~~~l~~Ga~G~is~~ 258 (359)
+. +|+ + . =.++.+-..||- . .+.+. .-.+..+|.|.. +.. ..++.+|+|-++.|.
T Consensus 141 iaa~~alA~~~~g~~~iYLEaGSGa~~~v~~~v~~~~~~~~~~~LivGGGIrs~e~A-~~~~~aGAD~IVvGn 212 (230)
T PF01884_consen 141 IAAAAALAAEYLGMPIIYLEAGSGAYGPVPEEVIAAVKKLSDIPLIVGGGIRSPEQA-REMAEAGADTIVVGN 212 (230)
T ss_dssp HHHHHHHHHHHTT-SEEEEE--TTSSS-HHHHHHHHHHHSSSSEEEEESS--SHHHH-HHHHCTTSSEEEESC
T ss_pred HHHHHHHHHHHhCCCEEEEEeCCCCCCCccHHHHHHHHhcCCccEEEeCCcCCHHHH-HHHHHCCCCEEEECC
Confidence 32 345 3 2 357888884443 1 22221 123455555432 233 345778999987664
No 372
>PLN02495 oxidoreductase, acting on the CH-CH group of donors
Probab=79.24 E-value=35 Score=34.38 Aligned_cols=84 Identities=10% Similarity=-0.038 Sum_probs=55.6
Q ss_pred CHHHHHHHHHHHHHhhCCCcEEEEecCC-CCHHHHHHHHHHHHhCCCCEEEE--cCCCCC---------CCCHHHHHHHH
Q 018253 109 SWDEHIMLIGHTVNCFGASVKVIGNTGS-NSTREAIHATEQGFAVGMHAALH--INPYYG---------KTSLEGLISHF 176 (359)
Q Consensus 109 T~~Er~~li~~~v~~~~grvpViagvg~-~st~~ai~la~~a~~~Gadav~v--~pP~y~---------~~s~~~l~~yf 176 (359)
..++..+.++.+.+.. +.+|||+.+.. .+.++-.++++..++.|||++-+ .-|... ..+.+.+.+-.
T Consensus 96 g~~~~l~~i~~~k~~~-~~~pvIaSi~~~~s~~~~~~~a~~~e~~GaD~iELNiSCPn~~~~r~~g~~~gq~~e~~~~i~ 174 (385)
T PLN02495 96 PFETMLAEFKQLKEEY-PDRILIASIMEEYNKDAWEEIIERVEETGVDALEINFSCPHGMPERKMGAAVGQDCDLLEEVC 174 (385)
T ss_pred CHHHHHHHHHHHHhhC-CCCcEEEEccCCCCHHHHHHHHHHHHhcCCCEEEEECCCCCCCCcCccchhhccCHHHHHHHH
Confidence 3566666665544433 35799999954 79999999999999999999975 334431 12334454555
Q ss_pred HHHHhc--CCeEEEeCCCC
Q 018253 177 DSVLSM--GPTIIYNVPSR 193 (359)
Q Consensus 177 ~~Ia~a--~PiiiYn~P~~ 193 (359)
+.|-+. .|+++==.|..
T Consensus 175 ~~Vk~~~~iPv~vKLsPn~ 193 (385)
T PLN02495 175 GWINAKATVPVWAKMTPNI 193 (385)
T ss_pred HHHHHhhcCceEEEeCCCh
Confidence 555443 68887766643
No 373
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=79.07 E-value=9.9 Score=35.12 Aligned_cols=83 Identities=17% Similarity=0.227 Sum_probs=47.1
Q ss_pred ecCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCC----------
Q 018253 67 KTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGS---------- 136 (359)
Q Consensus 67 ~TPF~~dg~ID~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~---------- 136 (359)
..|+.-+|-|.-. +-++.+++.|++++.++...-+ ..++++.+++..+.. .+++++..
T Consensus 76 ~~~l~v~GGi~~~---~~~~~~~~~Ga~~v~iGs~~~~--------~~~~~~~i~~~~g~~-~i~~sid~~~~~v~~~g~ 143 (241)
T PRK13585 76 GVPVQLGGGIRSA---EDAASLLDLGVDRVILGTAAVE--------NPEIVRELSEEFGSE-RVMVSLDAKDGEVVIKGW 143 (241)
T ss_pred CCcEEEcCCcCCH---HHHHHHHHcCCCEEEEChHHhh--------ChHHHHHHHHHhCCC-cEEEEEEeeCCEEEECCC
Confidence 4566666665521 2234556789999876444322 124555556655322 24444331
Q ss_pred -CCHH-HHHHHHHHHHhCCCCEEEEcC
Q 018253 137 -NSTR-EAIHATEQGFAVGMHAALHIN 161 (359)
Q Consensus 137 -~st~-~ai~la~~a~~~Gadav~v~p 161 (359)
.++. +.+++++.+.+.|++.+.+..
T Consensus 144 ~~~~~~~~~~~~~~~~~~G~~~i~~~~ 170 (241)
T PRK13585 144 TEKTGYTPVEAAKRFEELGAGSILFTN 170 (241)
T ss_pred cccCCCCHHHHHHHHHHcCCCEEEEEe
Confidence 1112 567888888889998887754
No 374
>PF02219 MTHFR: Methylenetetrahydrofolate reductase; InterPro: IPR003171 This family includes the 5,10-methylenetetrahydrofolate reductase 1.7.99.5 from EC from bacteria and methylenetetrahydrofolate reductase 1.5.1.20 from EC from eukaryotes. The structure for this domain is known [] to be a TIM barrel.; GO: 0004489 methylenetetrahydrofolate reductase (NADPH) activity, 0006555 methionine metabolic process, 0055114 oxidation-reduction process; PDB: 3IJD_B 1B5T_B 3FSU_C 1ZPT_C 2FMO_B 3FST_C 2FMN_C 1ZP3_A 1ZP4_B 1ZRQ_B ....
Probab=79.00 E-value=39 Score=32.34 Aligned_cols=126 Identities=15% Similarity=0.202 Sum_probs=72.6
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEccCccCcCCC----CH-----HHHHHHHHHHHHhhCCCcEE-EEe-----cCCCCHH
Q 018253 76 FDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLM----SW-----DEHIMLIGHTVNCFGASVKV-IGN-----TGSNSTR 140 (359)
Q Consensus 76 ID~~~l~~li~~li~~Gv~Gl~v~GstGE~~~L----T~-----~Er~~li~~~v~~~~grvpV-iag-----vg~~st~ 140 (359)
-+..++++.+..+.+.|++.|++... ..... .. .-=.+|++.+.+..+...-+ +++ ..+.+.+
T Consensus 82 ~n~~~l~~~L~~~~~~Gi~niL~l~G--D~~~~g~~~~~~~~~~~~~~~Li~~i~~~~~~~~~i~va~~P~~hp~~~~~~ 159 (287)
T PF02219_consen 82 RNREALQSDLLGAHALGIRNILALTG--DPPKGGDHFAKPVFDFDYALDLIRLIRQEYGDDFSIGVAGYPEGHPEAPDFE 159 (287)
T ss_dssp SBHHHHHHHHHHHHHTT--EEEEESS---TSTTSSS----TTS-SSHHHHHHHHHHHHGGGSEEEEEE-TTHHTTCSSHH
T ss_pred CCHHHHHHHHHHHHHcCCCeEEEecC--CCCCCCccccCCCchhHHHHHHHHHHHHhcCcccccccccCCCCCccccCHH
Confidence 36789999999999999999887643 22211 11 01245666655443332222 222 3455667
Q ss_pred HHHHHHHHHHhCCCCEEEEcCCCCCCCCHHHHHHHHHHHHhc---CCeEEEeCCC-----------CCCCCCCHHHHHHH
Q 018253 141 EAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSM---GPTIIYNVPS-----------RTGQDIPPRVIHTM 206 (359)
Q Consensus 141 ~ai~la~~a~~~Gadav~v~pP~y~~~s~~~l~~yf~~Ia~a---~PiiiYn~P~-----------~tg~~ls~e~l~~L 206 (359)
.-++..++=.++|||.++ +-|.| +.+.+.+|.+.+.+. .||+.==.|- ..|+.+|.+++++|
T Consensus 160 ~~~~~l~~Ki~aGA~f~i-TQ~~f---d~~~~~~~~~~~~~~g~~~pIi~GI~p~~s~~~~~~~~~~~Gv~iP~~~~~~l 235 (287)
T PF02219_consen 160 AELKRLKKKIDAGADFII-TQPFF---DAEAFERFLDRLREAGIDVPIIPGIMPLTSAKSARFLAKLCGVDIPDELIERL 235 (287)
T ss_dssp HHHHHHHHHHHTTESEEE-EEE-S---SHHHHHHHHHHHHHTTHTSEEEEEEE-HCCHHHHHHHHHHHT-EEEHHHHHHH
T ss_pred HHHHHHHHHHHCCCCEEe-ccccC---CHHHHHHHHHHHHHcCCCCcEEEEEeccCCHHHHHHHHhccCccCCHHHHHHH
Confidence 777777777789999655 55777 677788888888765 4775433332 12555555555555
Q ss_pred h
Q 018253 207 A 207 (359)
Q Consensus 207 a 207 (359)
.
T Consensus 236 ~ 236 (287)
T PF02219_consen 236 E 236 (287)
T ss_dssp H
T ss_pred H
Confidence 4
No 375
>cd03465 URO-D_like The URO-D _like protein superfamily includes bacterial and eukaryotic uroporphyrinogen decarboxylases (URO-D), coenzyme M methyltransferases and other putative bacterial methyltransferases. Uroporphyrinogen decarboxylase (URO-D) decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, an important branching point of the tetrapyrrole biosynthetic pathway. The methyltransferases represented here are important for ability of methanogenic organisms to use other compounds than carbon dioxide for reduction to methane.
Probab=78.95 E-value=17 Score=34.99 Aligned_cols=75 Identities=13% Similarity=0.115 Sum_probs=50.3
Q ss_pred HHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHH----HHHHhhCC-CcEEEEecCCCCHHHHHHHHHHHHhCCCC
Q 018253 81 YDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIG----HTVNCFGA-SVKVIGNTGSNSTREAIHATEQGFAVGMH 155 (359)
Q Consensus 81 l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~----~~v~~~~g-rvpViagvg~~st~~ai~la~~a~~~Gad 155 (359)
+.++++.+++.|++++++.-..+....+|.++..+++. .+++.+.. ..+++.++.++.. .......+.|+|
T Consensus 170 ~~~~~~~~~~~G~d~i~i~d~~~~~~~isp~~f~e~~~p~~k~i~~~i~~~g~~~~lH~cG~~~----~~~~~l~~~~~d 245 (330)
T cd03465 170 IIRYADALIEAGADGIYISDPWASSSILSPEDFKEFSLPYLKKVFDAIKALGGPVIHHNCGDTA----PILELMADLGAD 245 (330)
T ss_pred HHHHHHHHHHhCCCEEEEeCCccccCCCCHHHHHHHhhHHHHHHHHHHHHcCCceEEEECCCch----hHHHHHHHhCCC
Confidence 45566677788999999998887777789887765543 33333322 3577777765443 445566678888
Q ss_pred EEEE
Q 018253 156 AALH 159 (359)
Q Consensus 156 av~v 159 (359)
.+.+
T Consensus 246 ~~~~ 249 (330)
T cd03465 246 VFSI 249 (330)
T ss_pred eEee
Confidence 7664
No 376
>cd06287 PBP1_LacI_like_8 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=78.94 E-value=55 Score=30.35 Aligned_cols=82 Identities=13% Similarity=-0.006 Sum_probs=54.5
Q ss_pred CHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCCCHHHHHHHHHHHHhC--CC
Q 018253 77 DLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAV--GM 154 (359)
Q Consensus 77 D~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~st~~ai~la~~a~~~--Ga 154 (359)
|.++....+++|++.|..-+...++..+ ..+..+|.+-++.+.+..+-...++...+..+.++..+.++...+. ..
T Consensus 102 ~~~~~~~a~~~L~~~G~~~I~~i~~~~~--~~~~~~R~~gf~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 179 (269)
T cd06287 102 SAATARMLLEHLRAQGARQIALIVGSAR--RNSYLEAEAAYRAFAAEHGMPPVVLRVDEAGGEEAGYAACAQLLAQHPDL 179 (269)
T ss_pred cHHHHHHHHHHHHHcCCCcEEEEeCCcc--cccHHHHHHHHHHHHHHcCCCcceeEecCCCChHHHHHHHHHHHhCCCCC
Confidence 4778899999999999988877764433 3366788888888777643222233222345667777777766543 46
Q ss_pred CEEEEc
Q 018253 155 HAALHI 160 (359)
Q Consensus 155 dav~v~ 160 (359)
++++..
T Consensus 180 ~ai~~~ 185 (269)
T cd06287 180 DALCVP 185 (269)
T ss_pred CEEEEc
Confidence 888775
No 377
>PRK04180 pyridoxal biosynthesis lyase PdxS; Provisional
Probab=78.94 E-value=8 Score=37.36 Aligned_cols=95 Identities=15% Similarity=0.155 Sum_probs=59.5
Q ss_pred cCCCCHHHHH----------HHHHHHHHhhCCCcEEE-EecCCC-CHHHHHHHHHHHHhCCCCEEEEcCCCCCCCCHHHH
Q 018253 105 GQLMSWDEHI----------MLIGHTVNCFGASVKVI-GNTGSN-STREAIHATEQGFAVGMHAALHINPYYGKTSLEGL 172 (359)
Q Consensus 105 ~~~LT~~Er~----------~li~~~v~~~~grvpVi-agvg~~-st~~ai~la~~a~~~Gadav~v~pP~y~~~s~~~l 172 (359)
-..+|.+|.. ++++.+++. .++||+ +..|.- +.+++.+. .++|||++++..=.+...++++.
T Consensus 173 L~gyt~~~~~~~a~~~~~~~elL~ei~~~--~~iPVV~~AeGGI~TPedaa~v----me~GAdgVaVGSaI~ks~dP~~~ 246 (293)
T PRK04180 173 LTSMSEDELYTAAKELQAPYELVKEVAEL--GRLPVVNFAAGGIATPADAALM----MQLGADGVFVGSGIFKSGDPEKR 246 (293)
T ss_pred HhCCCHHHHHhhccccCCCHHHHHHHHHh--CCCCEEEEEeCCCCCHHHHHHH----HHhCCCEEEEcHHhhcCCCHHHH
Confidence 4566777743 455666653 368998 566666 44444333 35899999999887776777777
Q ss_pred HHHHHHHHhcCCeEEEeCCCCCCCCCCHHHHHHHhc-C-CCeEEEeccC
Q 018253 173 ISHFDSVLSMGPTIIYNVPSRTGQDIPPRVIHTMAQ-S-PNLAGVKECV 219 (359)
Q Consensus 173 ~~yf~~Ia~a~PiiiYn~P~~tg~~ls~e~l~~La~-~-pnivGiK~ss 219 (359)
.+.|.+.... ||. |+.+.+.++ + .-.+|+-.+.
T Consensus 247 akafv~ai~~-----~~~---------~~~~~~~s~~~~~~m~g~~~~~ 281 (293)
T PRK04180 247 ARAIVEATTH-----YDD---------PEVLAEVSKGLGEAMVGIDIDE 281 (293)
T ss_pred HHHHHHHHHH-----cCC---------HHHHHHHHcccccccCCCcccc
Confidence 7766665433 554 456777763 3 3455655443
No 378
>COG1830 FbaB DhnA-type fructose-1,6-bisphosphate aldolase and related enzymes [Carbohydrate transport and metabolism]
Probab=78.92 E-value=34 Score=32.63 Aligned_cols=104 Identities=14% Similarity=0.132 Sum_probs=71.3
Q ss_pred eeecCCCCCC----CCCHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEE-e-cCCCC
Q 018253 65 AIKTPYLPDG----RFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIG-N-TGSNS 138 (359)
Q Consensus 65 al~TPF~~dg----~ID~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpVia-g-vg~~s 138 (359)
+..+|-.++- ..|.+.+....+--.+.|+|=+=+.=+.-. +-++.+++.++ +||++ | -...+
T Consensus 148 ~~~YpRg~~~~~~~~~d~~~v~~aaRlaaelGADIiK~~ytg~~----------e~F~~vv~~~~--vpVviaGG~k~~~ 215 (265)
T COG1830 148 AWAYPRGPAIKDEYHRDADLVGYAARLAAELGADIIKTKYTGDP----------ESFRRVVAACG--VPVVIAGGPKTET 215 (265)
T ss_pred EEEeccCCcccccccccHHHHHHHHHHHHHhcCCeEeecCCCCh----------HHHHHHHHhCC--CCEEEeCCCCCCC
Confidence 3355554433 566666665555555689886554333222 33445555554 88765 3 33448
Q ss_pred HHHHHHHHHHHHhCCCCEEEEcCCCCCCCCHHHHHHHHHHHH
Q 018253 139 TREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVL 180 (359)
Q Consensus 139 t~~ai~la~~a~~~Gadav~v~pP~y~~~s~~~l~~yf~~Ia 180 (359)
.+++++..+.+.+.||.++.+---.|.+..++.+..-+..|.
T Consensus 216 ~~~~l~~~~~ai~aGa~G~~~GRNifQ~~~p~~m~~Ai~~Iv 257 (265)
T COG1830 216 EREFLEMVTAAIEAGAMGVAVGRNIFQHEDPEAMVKAIQAIV 257 (265)
T ss_pred hHHHHHHHHHHHHccCcchhhhhhhhccCChHHHHHHHHHHh
Confidence 899999999999999999999988899988888877777765
No 379
>PF02548 Pantoate_transf: Ketopantoate hydroxymethyltransferase; InterPro: IPR003700 The panB gene from Escherichia coli encodes the first enzyme of the pantothenate biosynthesis pathway, ketopantoate hydroxymethyltransferase (KPHMT) 2.1.2.11 from EC. Fungal ketopantoate hydroxymethyltransferase is essential for the biosynthesis of coenzyme A, while the pathway intermediate 4'-phosphopantetheine is required for penicillin production [].; GO: 0003864 3-methyl-2-oxobutanoate hydroxymethyltransferase activity, 0015940 pantothenate biosynthetic process; PDB: 3VAV_G 1M3U_A 3EZ4_J 1O68_C 1O66_A 1OY0_D.
Probab=78.85 E-value=8 Score=36.86 Aligned_cols=63 Identities=19% Similarity=0.217 Sum_probs=37.3
Q ss_pred eEEeeecCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCC
Q 018253 62 LITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGS 136 (359)
Q Consensus 62 i~~al~TPF~~dg~ID~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~ 136 (359)
-+...=.||..-..=+.++++.-.+.+-+.|++.+-+=|.. |..++++..++ ..+||+.++|-
T Consensus 78 ~~vv~DmPf~sy~~s~e~av~nA~rl~ke~GadaVKlEGg~---------~~~~~i~~l~~---~GIPV~gHiGL 140 (261)
T PF02548_consen 78 AFVVADMPFGSYQASPEQAVRNAGRLMKEAGADAVKLEGGA---------EIAETIKALVD---AGIPVMGHIGL 140 (261)
T ss_dssp SEEEEE--TTSSTSSHHHHHHHHHHHHHTTT-SEEEEEBSG---------GGHHHHHHHHH---TT--EEEEEES
T ss_pred ceEEecCCcccccCCHHHHHHHHHHHHHhcCCCEEEeccch---------hHHHHHHHHHH---CCCcEEEEecC
Confidence 34455678875544444555555544444999999998854 55666666655 46999999874
No 380
>PRK15452 putative protease; Provisional
Probab=78.62 E-value=15 Score=37.81 Aligned_cols=74 Identities=14% Similarity=0.099 Sum_probs=48.9
Q ss_pred HHHHHCCCCEEEEccCccC----cCCCCHHHHHHHHHHHHHhhCCCcEEEEecCC----CCHHHHHHHHHHHHhCCCCEE
Q 018253 86 NMQIVNGAEGMIVGGTTGE----GQLMSWDEHIMLIGHTVNCFGASVKVIGNTGS----NSTREAIHATEQGFAVGMHAA 157 (359)
Q Consensus 86 ~~li~~Gv~Gl~v~GstGE----~~~LT~~Er~~li~~~v~~~~grvpViagvg~----~st~~ai~la~~a~~~Gadav 157 (359)
+..++.|+|.|+++|..=- ...+|.+|-.+.++.+-+ . .++|++.+.. ...++..+..+...++|+|++
T Consensus 17 ~aAi~~GADaVY~G~~~~~~R~~~~~f~~edl~eav~~ah~--~-g~kvyvt~n~i~~e~el~~~~~~l~~l~~~gvDgv 93 (443)
T PRK15452 17 RYAFAYGADAVYAGQPRYSLRVRNNEFNHENLALGINEAHA--L-GKKFYVVVNIAPHNAKLKTFIRDLEPVIAMKPDAL 93 (443)
T ss_pred HHHHHCCCCEEEECCCccchhhhccCCCHHHHHHHHHHHHH--c-CCEEEEEecCcCCHHHHHHHHHHHHHHHhCCCCEE
Confidence 3566899999998764211 134577887777776543 2 2456555322 234556677788889999999
Q ss_pred EEcCC
Q 018253 158 LHINP 162 (359)
Q Consensus 158 ~v~pP 162 (359)
++..|
T Consensus 94 IV~d~ 98 (443)
T PRK15452 94 IMSDP 98 (443)
T ss_pred EEcCH
Confidence 99855
No 381
>cd02911 arch_FMN Archeal FMN-binding domain. This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown.
Probab=78.40 E-value=29 Score=32.34 Aligned_cols=80 Identities=13% Similarity=-0.006 Sum_probs=57.3
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEccC----------ccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCCCHHHHHHH
Q 018253 76 FDLEAYDDLVNMQIVNGAEGMIVGGT----------TGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHA 145 (359)
Q Consensus 76 ID~~~l~~li~~li~~Gv~Gl~v~Gs----------tGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~st~~ai~l 145 (359)
-|.+.+.+.++.+.+ +.++|=++-+ .|+...-..+.-.++++.+.+ + ++||.+=+....+.+++++
T Consensus 82 ~~~~~~~~aa~~~~~-~~~~ielN~gCP~~~v~~~g~G~~Ll~~p~~l~eiv~avr~-~--~~pVsvKir~g~~~~~~~l 157 (233)
T cd02911 82 SSLEPLLNAAALVAK-NAAILEINAHCRQPEMVEAGAGEALLKDPERLSEFIKALKE-T--GVPVSVKIRAGVDVDDEEL 157 (233)
T ss_pred CCHHHHHHHHHHHhh-cCCEEEEECCCCcHHHhcCCcchHHcCCHHHHHHHHHHHHh-c--CCCEEEEEcCCcCcCHHHH
Confidence 456778888877655 4577665444 477777777777888888776 3 6788885543222789999
Q ss_pred HHHHHhCCCCEEEE
Q 018253 146 TEQGFAVGMHAALH 159 (359)
Q Consensus 146 a~~a~~~Gadav~v 159 (359)
++.++++|+|++-+
T Consensus 158 a~~l~~aG~d~ihv 171 (233)
T cd02911 158 ARLIEKAGADIIHV 171 (233)
T ss_pred HHHHHHhCCCEEEE
Confidence 99999999997644
No 382
>PRK00164 moaA molybdenum cofactor biosynthesis protein A; Reviewed
Probab=78.30 E-value=20 Score=34.87 Aligned_cols=104 Identities=14% Similarity=0.155 Sum_probs=66.0
Q ss_pred CCCCCCCHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCCCHHHHHHHHHHHH
Q 018253 71 LPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGF 150 (359)
Q Consensus 71 ~~dg~ID~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~st~~ai~la~~a~ 150 (359)
.....++.+.+.++++.+.+.|+..|.+.| ||- .|. .+-.++++.+.+. .+...+-+.+.+.-.. +.++...
T Consensus 44 ~~~~~ls~eei~~~i~~~~~~gi~~I~~tG--GEP-ll~-~~l~~li~~i~~~-~~~~~i~itTNG~ll~---~~~~~L~ 115 (331)
T PRK00164 44 PKEELLSLEEIERLVRAFVALGVRKVRLTG--GEP-LLR-KDLEDIIAALAAL-PGIRDLALTTNGYLLA---RRAAALK 115 (331)
T ss_pred CccccCCHHHHHHHHHHHHHCCCCEEEEEC--CCC-cCc-cCHHHHHHHHHhc-CCCceEEEEcCchhHH---HHHHHHH
Confidence 345679999999999999999999999987 994 443 4566666665442 2223444444332232 3566777
Q ss_pred hCCCCEEEEcCCC-----CC----CCCHHHHHHHHHHHHhc
Q 018253 151 AVGMHAALHINPY-----YG----KTSLEGLISHFDSVLSM 182 (359)
Q Consensus 151 ~~Gadav~v~pP~-----y~----~~s~~~l~~yf~~Ia~a 182 (359)
++|.+.+-+..-. |. ..+-+.+.+..+.+.+.
T Consensus 116 ~agl~~i~ISlds~~~e~~~~i~~~~~~~~vl~~i~~~~~~ 156 (331)
T PRK00164 116 DAGLDRVNVSLDSLDPERFKAITGRDRLDQVLAGIDAALAA 156 (331)
T ss_pred HcCCCEEEEEeccCCHHHhccCCCCCCHHHHHHHHHHHHHC
Confidence 7899877665432 21 12446666666666655
No 383
>cd06289 PBP1_MalI_like Ligand-binding domain of MalI, a transcription regulator of the maltose system of Escherichia coli and its close homologs from other bacteria. This group includes the ligand-binding domain of MalI, a transcription regulator of the maltose system of Escherichia coli and its close homologs from other bacteria. They are members of the LacI-GalR family of repressor proteins which are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=78.22 E-value=52 Score=29.71 Aligned_cols=132 Identities=14% Similarity=0.226 Sum_probs=71.7
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEE-e----------cCCCCHHHHHH
Q 018253 76 FDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIG-N----------TGSNSTREAIH 144 (359)
Q Consensus 76 ID~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpVia-g----------vg~~st~~ai~ 144 (359)
-|.+...+.++.+++.+++|+++.+...+. . + .++.+.+ .++|++. + ++......+-.
T Consensus 39 ~~~~~~~~~i~~~~~~~vdgiii~~~~~~~----~-~---~~~~~~~---~~ipvV~~~~~~~~~~~~~v~~d~~~~~~~ 107 (268)
T cd06289 39 EDVERQEQLLSTMLEHGVAGIILCPAAGTS----P-D---LLKRLAE---SGIPVVLVAREVAGAPFDYVGPDNAAGARL 107 (268)
T ss_pred CChHHHHHHHHHHHHcCCCEEEEeCCCCcc----H-H---HHHHHHh---cCCCEEEEeccCCCCCCCEEeecchHHHHH
Confidence 467788899999999999999998764321 1 1 2333222 2456542 1 23334556677
Q ss_pred HHHHHHhCCCCEEEEcCCCCCCCCHHHHHHHHHHHHhc--C---CeEEEeCCCCCCCCCCHHHHHHHh-cCCCeEEEecc
Q 018253 145 ATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSM--G---PTIIYNVPSRTGQDIPPRVIHTMA-QSPNLAGVKEC 218 (359)
Q Consensus 145 la~~a~~~Gadav~v~pP~y~~~s~~~l~~yf~~Ia~a--~---PiiiYn~P~~tg~~ls~e~l~~La-~~pnivGiK~s 218 (359)
.+++..+.|..-+.++.+.-......+..+-|.+..+. . +..++..+. ...-..+.+.++. ++|++.||=-+
T Consensus 108 ~~~~l~~~g~~~i~~l~~~~~~~~~~~r~~gf~~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~i~~~ 185 (268)
T cd06289 108 ATEHLISLGHRRIAFIGGLEDSSTRRERLAGYRAALAEAGLPFDSELVVEGPP--SRQGGAEAVAQLLDLPPRPTAIVCF 185 (268)
T ss_pred HHHHHHHCCCCCEEEecCCccccchHHHHHHHHHHHHHcCCCCCchhEEecCc--chhhHHHHHHHHHcCCCCCCEEEEc
Confidence 77777888887777664322222333444444444432 1 222332221 1112235566655 56777777654
Q ss_pred Cc
Q 018253 219 VG 220 (359)
Q Consensus 219 s~ 220 (359)
+.
T Consensus 186 ~~ 187 (268)
T cd06289 186 ND 187 (268)
T ss_pred Cc
Confidence 43
No 384
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=78.13 E-value=24 Score=33.32 Aligned_cols=127 Identities=15% Similarity=0.086 Sum_probs=68.5
Q ss_pred eecCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhC-CCcEEEEecC---------
Q 018253 66 IKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFG-ASVKVIGNTG--------- 135 (359)
Q Consensus 66 l~TPF~~dg~ID~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~-grvpViagvg--------- 135 (359)
.-+|+.-+|-+... + -++.+.+.|++++.++..+=| ...+++.+++..+ .++ ++++-
T Consensus 73 ~~~pv~~gGGi~s~--~-d~~~l~~~G~~~vvigs~~~~--------~~~~~~~~~~~~~~~~i--~vsiD~k~g~~~~~ 139 (258)
T PRK01033 73 CFMPLCYGGGIKTL--E-QAKKIFSLGVEKVSINTAALE--------DPDLITEAAERFGSQSV--VVSIDVKKNLGGKF 139 (258)
T ss_pred CCCCEEECCCCCCH--H-HHHHHHHCCCCEEEEChHHhc--------CHHHHHHHHHHhCCCcE--EEEEEEecCCCCcE
Confidence 34677667665322 2 234445779999876632222 2345556565553 233 22221
Q ss_pred --------CCCHHHHHHHHHHHHhCCCCEEEEcCCC----CCCCCHHHHHHHHHHHHhc--CCeEEEeCCCCCCCCCCHH
Q 018253 136 --------SNSTREAIHATEQGFAVGMHAALHINPY----YGKTSLEGLISHFDSVLSM--GPTIIYNVPSRTGQDIPPR 201 (359)
Q Consensus 136 --------~~st~~ai~la~~a~~~Gadav~v~pP~----y~~~s~~~l~~yf~~Ia~a--~PiiiYn~P~~tg~~ls~e 201 (359)
..+-....++++.+++.|++.+++..-. |..++ .+.++++.+. .|++.- |=--+++
T Consensus 140 ~v~~~gw~~~~~~~~~e~~~~~~~~g~~~ii~~~i~~~G~~~G~d----~~~i~~~~~~~~ipvIas------GGv~s~e 209 (258)
T PRK01033 140 DVYTHNGTKKLKKDPLELAKEYEALGAGEILLNSIDRDGTMKGYD----LELLKSFRNALKIPLIAL------GGAGSLD 209 (258)
T ss_pred EEEEcCCeecCCCCHHHHHHHHHHcCCCEEEEEccCCCCCcCCCC----HHHHHHHHhhCCCCEEEe------CCCCCHH
Confidence 1123346788888888999888877432 22232 3444555554 466432 4345677
Q ss_pred HHHHHhcCCCeEEE
Q 018253 202 VIHTMAQSPNLAGV 215 (359)
Q Consensus 202 ~l~~La~~pnivGi 215 (359)
.+.++.+..++-|+
T Consensus 210 D~~~l~~~~GvdgV 223 (258)
T PRK01033 210 DIVEAILNLGADAA 223 (258)
T ss_pred HHHHHHHHCCCCEE
Confidence 78777643344444
No 385
>smart00729 Elp3 Elongator protein 3, MiaB family, Radical SAM. This superfamily contains MoaA, NifB, PqqE, coproporphyrinogen III oxidase, biotin synthase and MiaB families, and includes a representative in the eukaryotic elongator subunit, Elp-3. Some members of the family are methyltransferases.
Probab=78.01 E-value=25 Score=30.44 Aligned_cols=45 Identities=9% Similarity=0.106 Sum_probs=26.3
Q ss_pred CHHHHHHHHHHHHhCC-CCEEEEcCCCCCCCCHHHHHHHHHHHHhc
Q 018253 138 STREAIHATEQGFAVG-MHAALHINPYYGKTSLEGLISHFDSVLSM 182 (359)
Q Consensus 138 st~~ai~la~~a~~~G-adav~v~pP~y~~~s~~~l~~yf~~Ia~a 182 (359)
+.++.++.++.+.+.| ..-...+-|-+...+.+++.+..+.+.+.
T Consensus 134 ~~~~~~~~i~~~~~~g~~~v~~~~~~g~~~~~~~~~~~~~~~~~~~ 179 (216)
T smart00729 134 TVEDVLEAVEKLREAGPIKVSTDLIVGLPGETEEDFEETLKLLKEL 179 (216)
T ss_pred CHHHHHHHHHHHHHhCCcceEEeEEecCCCCCHHHHHHHHHHHHHc
Confidence 4577778888888888 43222222222234667777777766654
No 386
>PRK07709 fructose-bisphosphate aldolase; Provisional
Probab=77.96 E-value=39 Score=32.67 Aligned_cols=121 Identities=17% Similarity=0.205 Sum_probs=0.0
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCC-CcEE---EEecCC------------CCH
Q 018253 76 FDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGA-SVKV---IGNTGS------------NST 139 (359)
Q Consensus 76 ID~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~g-rvpV---iagvg~------------~st 139 (359)
+|...-...+...++.|.+.+.+=|| .|+.+|=.+..+.+++.+.. .+.| +..+++ .+.
T Consensus 84 LDHg~~~e~i~~ai~~GftSVM~DgS-----~lp~eeNi~~Trevv~~Ah~~gv~VEaElG~igg~ed~~~~~~~~yT~p 158 (285)
T PRK07709 84 LDHGSSFEKCKEAIDAGFTSVMIDAS-----HHPFEENVETTKKVVEYAHARNVSVEAELGTVGGQEDDVIAEGVIYADP 158 (285)
T ss_pred CCCCCCHHHHHHHHHcCCCEEEEeCC-----CCCHHHHHHHHHHHHHHHHHcCCEEEEEEeccCCccCCcccccccCCCH
Q ss_pred HHHHHHHHHHHhCCCCEEEEcCCCC---CCCCHHHHHHHHHHHHhc--CCeEEEeCCCCCCCCCCHHHHHHHhcC
Q 018253 140 REAIHATEQGFAVGMHAALHINPYY---GKTSLEGLISHFDSVLSM--GPTIIYNVPSRTGQDIPPRVIHTMAQS 209 (359)
Q Consensus 140 ~~ai~la~~a~~~Gadav~v~pP~y---~~~s~~~l~~yf~~Ia~a--~PiiiYn~P~~tg~~ls~e~l~~La~~ 209 (359)
+++.++.+.- |+|++.+.-=.- ++..++==++-.++|.++ .|++++ -|..++.+.+.+..++
T Consensus 159 eeA~~Fv~~T---gvD~LAvaiGt~HG~Y~~~p~L~~~~L~~I~~~~~iPLVLH-----GgSG~~~e~~~~ai~~ 225 (285)
T PRK07709 159 AECKHLVEAT---GIDCLAPALGSVHGPYKGEPNLGFAEMEQVRDFTGVPLVLH-----GGTGIPTADIEKAISL 225 (285)
T ss_pred HHHHHHHHHh---CCCEEEEeecccccCcCCCCccCHHHHHHHHHHHCCCEEEe-----CCCCCCHHHHHHHHHc
No 387
>cd01391 Periplasmic_Binding_Protein_Type_1 Type 1 periplasmic binding fold superfamily. Type 1 periplasmic binding fold superfamily. This model and hierarchy represent the ligand binding domains of the LacI family of transcriptional regulators, periplasmic binding proteins of the ABC-type transport systems, the family C G-protein couples receptors (GPCRs), membrane bound guanylyl cyclases including the family of natriuretic peptide receptors (NPRs), and the N-terminal leucine/isoleucine/valine- binding protein (LIVBP)-like domains of the ionotropic glutamate receptors (iGluRs). In LacI-like transcriptional regulator and the bacterial periplasmic binding proteins the ligands are monosaccharides including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars, with a few exceptions. Periplasmic sugar binding proteins are one of the components of ABC transporters and are involved in the active transport of water-soluble ligands. The LacI family of proteins con
Probab=77.82 E-value=30 Score=30.40 Aligned_cols=95 Identities=17% Similarity=0.161 Sum_probs=59.4
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEE---------------ecCCCCHH
Q 018253 76 FDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIG---------------NTGSNSTR 140 (359)
Q Consensus 76 ID~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpVia---------------gvg~~st~ 140 (359)
-|.+...+.++.+++.+++|++..+...+... +.+.+.+ .++|++. .++.....
T Consensus 42 ~~~~~~~~~~~~~~~~~~d~ii~~~~~~~~~~--------~~~~~~~---~~ip~v~~~~~~~~~~~~~~~~~~~~~~~~ 110 (269)
T cd01391 42 SDPERALEALRDLIQQGVDGIIGPPSSSSALA--------VVELAAA---AGIPVVSLDATAPDLTGYPYVFRVGPDNEQ 110 (269)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEecCCCHHHHH--------HHHHHHH---cCCcEEEecCCCCccCCCceEEEEcCCcHH
Confidence 34467888888888999999998877644221 2222221 2344433 34444566
Q ss_pred HHHHHHHHHHhCCCCEEEEcCCCCCCCCHHHHHHHHHHHHhc
Q 018253 141 EAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSM 182 (359)
Q Consensus 141 ~ai~la~~a~~~Gadav~v~pP~y~~~s~~~l~~yf~~Ia~a 182 (359)
....++++..+.|-..+.++.+... +......+.|++..+.
T Consensus 111 ~~~~~~~~l~~~~~~~i~~i~~~~~-~~~~~~~~~~~~~~~~ 151 (269)
T cd01391 111 AGEAAAEYLAEKGWKRVALIYGDDG-AYGRERLEGFKAALKK 151 (269)
T ss_pred HHHHHHHHHHHhCCceEEEEecCCc-chhhHHHHHHHHHHHh
Confidence 6777888888888777776654333 4445566777766655
No 388
>PRK11613 folP dihydropteroate synthase; Provisional
Probab=77.73 E-value=21 Score=34.38 Aligned_cols=120 Identities=16% Similarity=0.184 Sum_probs=68.8
Q ss_pred CCceEEeeecCCCCCCC-CCHHHHHHHHHHHHHCCCCEEEEccCccCcC--CCCH-HHHHHHHHHHHHhhCCCcEEEEec
Q 018253 59 ALRLITAIKTPYLPDGR-FDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQ--LMSW-DEHIMLIGHTVNCFGASVKVIGNT 134 (359)
Q Consensus 59 ~~Gi~~al~TPF~~dg~-ID~~~l~~li~~li~~Gv~Gl~v~GstGE~~--~LT~-~Er~~li~~~v~~~~grvpViagv 134 (359)
+.||+-..+=-|.+.|. .|.+...+.++.+++.|++-|=++|-++.-. ..+. +|..+++..+ +.......+.+.+
T Consensus 17 imGIlNvTpDSFsdgg~~~~~~~a~~~a~~~~~~GAdIIDIGgeSTrPg~~~v~~eeE~~Rv~pvI-~~l~~~~~~~ISI 95 (282)
T PRK11613 17 VMGILNVTPDSFSDGGTHNSLIDAVKHANLMINAGATIIDVGGESTRPGAAEVSVEEELDRVIPVV-EAIAQRFEVWISV 95 (282)
T ss_pred EEEEEcCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEEECCCCCCCCCCCCCHHHHHHHHHHHH-HHHHhcCCCeEEE
Confidence 46666555555776776 5999999999999999999999887444322 2333 4555544333 3333222233455
Q ss_pred CCCCHHHHHHHHHHHHhCCCCEEEEcCCCCCCCCHHHHHHHHHHHHhc-CCeEEEeC
Q 018253 135 GSNSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSM-GPTIIYNV 190 (359)
Q Consensus 135 g~~st~~ai~la~~a~~~Gadav~v~pP~y~~~s~~~l~~yf~~Ia~a-~PiiiYn~ 190 (359)
-+...+ -++.|.++|||-+==+.-. +.++ .++.+++. .|+++-+.
T Consensus 96 DT~~~~----va~~AL~~GadiINDI~g~----~d~~---~~~~~a~~~~~vVlmh~ 141 (282)
T PRK11613 96 DTSKPE----VIRESAKAGAHIINDIRSL----SEPG---ALEAAAETGLPVCLMHM 141 (282)
T ss_pred ECCCHH----HHHHHHHcCCCEEEECCCC----CCHH---HHHHHHHcCCCEEEEcC
Confidence 544443 3455556699854112111 2223 23335654 68777654
No 389
>PRK05437 isopentenyl pyrophosphate isomerase; Provisional
Probab=77.69 E-value=49 Score=32.82 Aligned_cols=137 Identities=14% Similarity=0.050 Sum_probs=78.6
Q ss_pred EEeeecCCCCCCCC-CHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCCCHH-
Q 018253 63 ITAIKTPYLPDGRF-DLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTR- 140 (359)
Q Consensus 63 ~~al~TPF~~dg~I-D~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~st~- 140 (359)
+|.++.|++ .|+- ..+-..+++.-.-+.|+.- ..|+.+=+ .++. |..+-++.+.+.. ++.|++++++.....
T Consensus 61 ~Pi~i~~Mt-Ggs~~~~~in~~La~~a~~~G~~~--~~Gs~~~~-~~~~-~~~~~~~~vr~~~-p~~p~~aNl~~~~~~~ 134 (352)
T PRK05437 61 APFLINAMT-GGSEKAKEINRKLAEAAEELGIAM--GVGSQRAA-LKDP-ELADSFSVVRKVA-PDGLLFANLGAVQLYG 134 (352)
T ss_pred CCEEecccC-CCChhHHHHHHHHHHHHHHcCCCe--EecccHhh-ccCh-hhHHHHHHHHHHC-CCceEEeecCccccCC
Confidence 456667776 4543 3333366666666677542 23433211 2344 4777777766655 456999998876551
Q ss_pred H-HHHHHHHHHhCCCCEEEEcCCCC----CC---CCHHHHHHHHHHHHhc--CCeEEEeCCCCCCCCCCHHHHHHHhcC
Q 018253 141 E-AIHATEQGFAVGMHAALHINPYY----GK---TSLEGLISHFDSVLSM--GPTIIYNVPSRTGQDIPPRVIHTMAQS 209 (359)
Q Consensus 141 ~-ai~la~~a~~~Gadav~v~pP~y----~~---~s~~~l~~yf~~Ia~a--~PiiiYn~P~~tg~~ls~e~l~~La~~ 209 (359)
- .-+..+..+.++||++-+-.+.- .+ .+.+.+.+.++.|.+. .||++=-. |..++++..++|.+.
T Consensus 135 ~~~~~~~~~~~~~~adal~l~l~~~qe~~~p~g~~~f~~~le~i~~i~~~~~vPVivK~~----g~g~s~~~a~~l~~~ 209 (352)
T PRK05437 135 YGVEEAQRAVEMIEADALQIHLNPLQELVQPEGDRDFRGWLDNIAEIVSALPVPVIVKEV----GFGISKETAKRLADA 209 (352)
T ss_pred CCHHHHHHHHHhcCCCcEEEeCccchhhcCCCCcccHHHHHHHHHHHHHhhCCCEEEEeC----CCCCcHHHHHHHHHc
Confidence 1 11223334445788875543221 11 1344566777777775 69997643 445788888888753
No 390
>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302.
Probab=77.61 E-value=11 Score=37.78 Aligned_cols=40 Identities=23% Similarity=0.327 Sum_probs=25.4
Q ss_pred HhhCCC-cEEEEecCCCCHHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 018253 122 NCFGAS-VKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYYG 165 (359)
Q Consensus 122 ~~~~gr-vpViagvg~~st~~ai~la~~a~~~Gadav~v~pP~y~ 165 (359)
+..++| +|||+.=|=.+-.+. ..|.++|||+||+-.|+..
T Consensus 249 ~e~g~r~vpVIAdGGI~tg~di----~kAlAlGAdaV~iGt~~a~ 289 (369)
T TIGR01304 249 DETGGRYVHVIADGGIETSGDL----VKAIACGADAVVLGSPLAR 289 (369)
T ss_pred HhcCCCCceEEEeCCCCCHHHH----HHHHHcCCCEeeeHHHHHh
Confidence 334544 999984333333333 3455689999999988663
No 391
>TIGR01235 pyruv_carbox pyruvate carboxylase. This enzyme plays a role in gluconeogensis but not glycolysis.
Probab=77.60 E-value=21 Score=41.03 Aligned_cols=91 Identities=19% Similarity=0.161 Sum_probs=72.5
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCCCHHHHHHHHHHHHhCCCC
Q 018253 76 FDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMH 155 (359)
Q Consensus 76 ID~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~st~~ai~la~~a~~~Gad 155 (359)
=|.+-+.++++.+.+.|++-|.+.-++| .|++.+-.++++.+.+.+ .+|+=+++ +++.--++.-.-.|.++|||
T Consensus 686 ~~l~y~~~~ak~l~~~Gad~I~ikDt~G---ll~P~~~~~Lv~~lk~~~--~~pi~~H~-Hdt~Gla~an~laA~eaGad 759 (1143)
T TIGR01235 686 YDLKYYTNLAVELEKAGAHILGIKDMAG---LLKPAAAKLLIKALREKT--DLPIHFHT-HDTSGIAVASMLAAVEAGVD 759 (1143)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEECCCcC---CcCHHHHHHHHHHHHHhc--CCeEEEEE-CCCCCcHHHHHHHHHHhCCC
Confidence 5688899999999999999999999999 489999999999999887 47887776 45677788888899999999
Q ss_pred EEEEcC-CCCCCCCHHHH
Q 018253 156 AALHIN-PYYGKTSLEGL 172 (359)
Q Consensus 156 av~v~p-P~y~~~s~~~l 172 (359)
.+=..- +.-..+++..+
T Consensus 760 ~vD~ai~gl~G~ts~p~~ 777 (1143)
T TIGR01235 760 VVDVAVDSMSGLTSQPSL 777 (1143)
T ss_pred EEEecchhhcCCCCCHhH
Confidence 985543 33334443333
No 392
>PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed
Probab=77.58 E-value=20 Score=34.59 Aligned_cols=124 Identities=16% Similarity=0.265 Sum_probs=0.0
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCC-CcEE---EEecCCCC---------HHHH
Q 018253 76 FDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGA-SVKV---IGNTGSNS---------TREA 142 (359)
Q Consensus 76 ID~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~g-rvpV---iagvg~~s---------t~~a 142 (359)
+|...-...+.+.++.|.+++.+ -++.|+.+|=.+..+.+++.+.. .++| +..+++.. .-+.
T Consensus 81 LDH~~~~e~i~~Ai~~GftSVM~-----DgS~l~~eeNi~~T~~vve~Ah~~gv~VEaElG~vgg~ed~~~~~~~~~T~p 155 (283)
T PRK07998 81 LDHGKTFEDVKQAVRAGFTSVMI-----DGAALPFEENIAFTKEAVDFAKSYGVPVEAELGAILGKEDDHVSEADCKTEP 155 (283)
T ss_pred CcCCCCHHHHHHHHHcCCCEEEE-----eCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeccCCCccccccccccccCCH
Q ss_pred HHHHHHHHhCCCCEEEEcCC-CCCCCCHHHH-HHHHHHHHhc--CCeEEEeCCCCCCCCCCHHHHHHHhcC
Q 018253 143 IHATEQGFAVGMHAALHINP-YYGKTSLEGL-ISHFDSVLSM--GPTIIYNVPSRTGQDIPPRVIHTMAQS 209 (359)
Q Consensus 143 i~la~~a~~~Gadav~v~pP-~y~~~s~~~l-~~yf~~Ia~a--~PiiiYn~P~~tg~~ls~e~l~~La~~ 209 (359)
-+..+.+++.|+|++.+.-- ....+....+ ++-+++|.++ .|++++ -|..++.+.+.+..+.
T Consensus 156 e~a~~Fv~~TgvD~LAvaiGt~HG~Y~~p~l~~~~l~~I~~~~~vPLVlH-----GgSG~~~e~~~~ai~~ 221 (283)
T PRK07998 156 EKVKDFVERTGCDMLAVSIGNVHGLEDIPRIDIPLLKRIAEVSPVPLVIH-----GGSGIPPEILRSFVNY 221 (283)
T ss_pred HHHHHHHHHhCcCeeehhccccccCCCCCCcCHHHHHHHHhhCCCCEEEe-----CCCCCCHHHHHHHHHc
No 393
>TIGR03821 AblA_like_1 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in E. coli, Buchnera, Yersinia, etc.
Probab=77.38 E-value=75 Score=31.07 Aligned_cols=128 Identities=6% Similarity=0.001 Sum_probs=73.1
Q ss_pred CCCCHHHHHHHHHHHHHC-CCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCC-----CCHHHHHHHHH
Q 018253 74 GRFDLEAYDDLVNMQIVN-GAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGS-----NSTREAIHATE 147 (359)
Q Consensus 74 g~ID~~~l~~li~~li~~-Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~-----~st~~ai~la~ 147 (359)
+....+.+.+.++++.+. |+..|++.| ||-..+++..-.++++..... . .+.. .++++ ....-+-++++
T Consensus 123 ~~~~~~~~~~~i~~i~~~~~i~~VvltG--GEPL~~~d~~L~~ll~~l~~i-~-~~~~-iri~tr~~~~~p~rit~el~~ 197 (321)
T TIGR03821 123 NQPNKAQWKEALEYIAQHPEINEVILSG--GDPLMAKDHRLDWLLNLLEQI-P-HLKR-LRIHTRLPVVIPDRITSGLCD 197 (321)
T ss_pred CCCCHHHHHHHHHHHHhcCCCCEEEEeC--cccccCCchHHHHHHHHHHhC-C-CCcE-EEEecCcceeeHHHhhHHHHH
Confidence 356678888889888754 899999999 998777665556666554432 1 1111 12211 11233346667
Q ss_pred HHHhCCCCEEEEcCCCCCCCCHHHHHHHHHHHHhc-CCeEEEeCCCCCCCCCCHHHHHHHh
Q 018253 148 QGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSM-GPTIIYNVPSRTGQDIPPRVIHTMA 207 (359)
Q Consensus 148 ~a~~~Gadav~v~pP~y~~~s~~~l~~yf~~Ia~a-~PiiiYn~P~~tg~~ls~e~l~~La 207 (359)
..++.|.+.++++.--......++..+-.+.+.++ .++. -+.+-..|++=+++++.+|.
T Consensus 198 ~L~~~~~~~~~~~h~dh~~Ei~d~~~~ai~~L~~~Gi~v~-~qtvllkgiNDn~~~l~~L~ 257 (321)
T TIGR03821 198 LLANSRLQTVLVVHINHANEIDAEVADALAKLRNAGITLL-NQSVLLRGVNDNADTLAALS 257 (321)
T ss_pred HHHhcCCcEEEEeeCCChHhCcHHHHHHHHHHHHcCCEEE-ecceeeCCCCCCHHHHHHHH
Confidence 77777877765432111111224455555555555 4553 23333446666778777776
No 394
>PRK09240 thiH thiamine biosynthesis protein ThiH; Reviewed
Probab=77.35 E-value=22 Score=35.52 Aligned_cols=79 Identities=16% Similarity=0.130 Sum_probs=58.7
Q ss_pred CCCCHHHHHHHHHHHHHCCCCEEEEccCccCcCC-CCHHHHHHHHHHHHHhhCCCcEEEEecCCCCHHHHHHHHHHHHhC
Q 018253 74 GRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQL-MSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAV 152 (359)
Q Consensus 74 g~ID~~~l~~li~~li~~Gv~Gl~v~GstGE~~~-LT~~Er~~li~~~v~~~~grvpViagvg~~st~~ai~la~~a~~~ 152 (359)
..++.+.+.+.++...+.|+.-+.+.| ||... ...+.-.++++.+.+... .+.+ .++..+.++ .+..+++
T Consensus 102 ~~ls~eEI~~~a~~~~~~Gv~~i~lvg--Ge~p~~~~~e~l~~~i~~Ik~~~p-~i~i--~~g~lt~e~----l~~Lk~a 172 (371)
T PRK09240 102 KTLDEEEIEREMAAIKKLGFEHILLLT--GEHEAKVGVDYIRRALPIAREYFS-SVSI--EVQPLSEEE----YAELVEL 172 (371)
T ss_pred ccCCHHHHHHHHHHHHhCCCCEEEEee--CCCCCCCCHHHHHHHHHHHHHhCC-Ccee--ccCCCCHHH----HHHHHHc
Confidence 468889999999999999999998876 88776 677888888888776543 2333 344444444 3677889
Q ss_pred CCCEEEEcC
Q 018253 153 GMHAALHIN 161 (359)
Q Consensus 153 Gadav~v~p 161 (359)
|++.+.+-.
T Consensus 173 Gv~r~~i~l 181 (371)
T PRK09240 173 GLDGVTVYQ 181 (371)
T ss_pred CCCEEEEEE
Confidence 999988753
No 395
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=77.33 E-value=35 Score=30.57 Aligned_cols=99 Identities=7% Similarity=-0.001 Sum_probs=54.0
Q ss_pred eEEeeecCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEc-cCccCcCC-CCHHHHHHHHHHHHHhhCCCcEEEEecCCCCH
Q 018253 62 LITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVG-GTTGEGQL-MSWDEHIMLIGHTVNCFGASVKVIGNTGSNST 139 (359)
Q Consensus 62 i~~al~TPF~~dg~ID~~~l~~li~~li~~Gv~Gl~v~-GstGE~~~-LT~~Er~~li~~~v~~~~grvpViagvg~~st 139 (359)
+++.+.+|.+ ....++...+.|++-+-+. |..|+... .+.+. ++.+.+... ..++. =.|+-+.
T Consensus 105 ~~~~~~~~~t---------~~~~~~~~~~~g~d~v~~~pg~~~~~~~~~~~~~----i~~l~~~~~-~~~i~-v~GGI~~ 169 (206)
T TIGR03128 105 VQVDLINVKD---------KVKRAKELKELGADYIGVHTGLDEQAKGQNPFED----LQTILKLVK-EARVA-VAGGINL 169 (206)
T ss_pred EEEEecCCCC---------hHHHHHHHHHcCCCEEEEcCCcCcccCCCCCHHH----HHHHHHhcC-CCcEE-EECCcCH
Confidence 5556677754 2333444566799977664 33333332 23222 223333332 23333 2344433
Q ss_pred HHHHHHHHHHHhCCCCEEEEcCCCCCCCCHHHHHHHHHHH
Q 018253 140 REAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSV 179 (359)
Q Consensus 140 ~~ai~la~~a~~~Gadav~v~pP~y~~~s~~~l~~yf~~I 179 (359)
+. ++.+.+.|+|++.+..-.|...+.++..+.++++
T Consensus 170 ~n----~~~~~~~Ga~~v~vGsai~~~~d~~~~~~~l~~~ 205 (206)
T TIGR03128 170 DT----IPDVIKLGPDIVIVGGAITKAADPAEAARQIRKL 205 (206)
T ss_pred HH----HHHHHHcCCCEEEEeehhcCCCCHHHHHHHHHhh
Confidence 33 4455679999999987777666777777666653
No 396
>cd02808 GltS_FMN Glutamate synthase (GltS) FMN-binding domain. GltS is a complex iron-sulfur flavoprotein that catalyzes the reductive synthesis of L-glutamate from 2-oxoglutarate and L-glutamine via intramolecular channelling of ammonia, a reaction in the plant, yeast and bacterial pathway for ammonia assimilation. It is a multifunctional enzyme that functions through three distinct active centers, carrying out L-glutamine hydrolysis, conversion of 2-oxoglutarate into L-glutamate, and electron uptake from an electron donor.
Probab=77.23 E-value=28 Score=35.02 Aligned_cols=73 Identities=14% Similarity=0.107 Sum_probs=42.0
Q ss_pred HCCCCEEEEccCccCc----------CCCCHHHHHHHHHHHHHhh--CCCcEEEEecCCCCHHHHHHHHHHHHhCCCCEE
Q 018253 90 VNGAEGMIVGGTTGEG----------QLMSWDEHIMLIGHTVNCF--GASVKVIGNTGSNSTREAIHATEQGFAVGMHAA 157 (359)
Q Consensus 90 ~~Gv~Gl~v~GstGE~----------~~LT~~Er~~li~~~v~~~--~grvpViagvg~~st~~ai~la~~a~~~Gadav 157 (359)
..|+|+|.+-|+-|.. +.++..+=...+..++... ..++|||+.=|=.+-.+.+ .|..+|||+|
T Consensus 236 ~~g~D~I~VsG~~Ggtg~~~~~~~~~~g~pt~~~L~~v~~~~~~~~~~~~i~viasGGI~~g~Dv~----kalaLGAd~V 311 (392)
T cd02808 236 AAGADFITIDGAEGGTGAAPLTFIDHVGLPTELGLARAHQALVKNGLRDRVSLIASGGLRTGADVA----KALALGADAV 311 (392)
T ss_pred HcCCCEEEEeCCCCCCCCCcccccccCCccHHHHHHHHHHHHHHcCCCCCCeEEEECCCCCHHHHH----HHHHcCCCee
Confidence 4569999999885532 2344443222222222222 3478988733333444443 3455899999
Q ss_pred EEcCCCCCC
Q 018253 158 LHINPYYGK 166 (359)
Q Consensus 158 ~v~pP~y~~ 166 (359)
.+..++.+.
T Consensus 312 ~ig~~~l~a 320 (392)
T cd02808 312 GIGTAALIA 320 (392)
T ss_pred eechHHHHh
Confidence 999887754
No 397
>PLN02826 dihydroorotate dehydrogenase
Probab=77.21 E-value=27 Score=35.51 Aligned_cols=90 Identities=11% Similarity=0.122 Sum_probs=63.4
Q ss_pred CHHHHHHHHHHHHHCCCCEEEEccC----ccCcCCCCHHHHHHHHHHHHHhh-------CCCcEEEEecCCC-CHHHHHH
Q 018253 77 DLEAYDDLVNMQIVNGAEGMIVGGT----TGEGQLMSWDEHIMLIGHTVNCF-------GASVKVIGNTGSN-STREAIH 144 (359)
Q Consensus 77 D~~~l~~li~~li~~Gv~Gl~v~Gs----tGE~~~LT~~Er~~li~~~v~~~-------~grvpViagvg~~-st~~ai~ 144 (359)
..+.+...++.+. ..+|.|.+|=| .|.-.....+.-.++++.+.+.. ..++||++=++-. +.++..+
T Consensus 202 ~~~Dy~~~~~~~~-~~aDylelNiScPNtpglr~lq~~~~l~~ll~~V~~~~~~~~~~~~~~~Pv~vKlaPdl~~~di~~ 280 (409)
T PLN02826 202 AAADYVQGVRALS-QYADYLVINVSSPNTPGLRKLQGRKQLKDLLKKVLAARDEMQWGEEGPPPLLVKIAPDLSKEDLED 280 (409)
T ss_pred cHHHHHHHHHHHh-hhCCEEEEECCCCCCCCcccccChHHHHHHHHHHHHHHHHhhhccccCCceEEecCCCCCHHHHHH
Confidence 3566777777664 45999998855 24433444556667777665442 2468999987643 4457889
Q ss_pred HHHHHHhCCCCEEEEcCCCCCCC
Q 018253 145 ATEQGFAVGMHAALHINPYYGKT 167 (359)
Q Consensus 145 la~~a~~~Gadav~v~pP~y~~~ 167 (359)
.++.+.+.|+|++.+++-.+..+
T Consensus 281 ia~~a~~~G~dGIi~~NTt~~r~ 303 (409)
T PLN02826 281 IAAVALALGIDGLIISNTTISRP 303 (409)
T ss_pred HHHHHHHcCCCEEEEEcccCcCc
Confidence 99999999999999998876543
No 398
>cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors.
Probab=77.13 E-value=76 Score=31.00 Aligned_cols=87 Identities=13% Similarity=0.095 Sum_probs=51.2
Q ss_pred CCcEEEEecCCCC-------HHHHHHHHHHHHhCCCCEEEE--cCCCCCC----CCHHHHHHHHHHHHhc-------CCe
Q 018253 126 ASVKVIGNTGSNS-------TREAIHATEQGFAVGMHAALH--INPYYGK----TSLEGLISHFDSVLSM-------GPT 185 (359)
Q Consensus 126 grvpViagvg~~s-------t~~ai~la~~a~~~Gadav~v--~pP~y~~----~s~~~l~~yf~~Ia~a-------~Pi 185 (359)
.++|++++++.++ .+|-++.++.+.. +||++-+ .-|.+.. .+.+.+.+..++|.+. .||
T Consensus 127 ~~~plivsi~g~~~~~~~~~~~d~~~~~~~~~~-~ad~ielN~scP~~~g~~~~~~~~~~~~iv~av~~~~~~~~~~~Pv 205 (327)
T cd04738 127 RGGPLGVNIGKNKDTPLEDAVEDYVIGVRKLGP-YADYLVVNVSSPNTPGLRDLQGKEALRELLTAVKEERNKLGKKVPL 205 (327)
T ss_pred CCCeEEEEEeCCCCCcccccHHHHHHHHHHHHh-hCCEEEEECCCCCCCccccccCHHHHHHHHHHHHHHHhhcccCCCe
Confidence 4689999998765 5667777777655 4898876 4455421 2446666777776543 577
Q ss_pred EEEeCCCCCCCCCCHHHHHHHh---cCCCeEEEecc
Q 018253 186 IIYNVPSRTGQDIPPRVIHTMA---QSPNLAGVKEC 218 (359)
Q Consensus 186 iiYn~P~~tg~~ls~e~l~~La---~~pnivGiK~s 218 (359)
++==.|. ++.+.+.+++ +--.+-||+..
T Consensus 206 ~vKl~~~-----~~~~~~~~ia~~l~~aGad~I~~~ 236 (327)
T cd04738 206 LVKIAPD-----LSDEELEDIADVALEHGVDGIIAT 236 (327)
T ss_pred EEEeCCC-----CCHHHHHHHHHHHHHcCCcEEEEE
Confidence 6554332 3333333333 23356666643
No 399
>PRK07028 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator; Validated
Probab=77.01 E-value=38 Score=34.41 Aligned_cols=111 Identities=10% Similarity=0.053 Sum_probs=67.6
Q ss_pred HHHHHHCCCCEEEEc-cCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCCCHHHHHHHHHHHHhCCCCEEEEcCCC
Q 018253 85 VNMQIVNGAEGMIVG-GTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPY 163 (359)
Q Consensus 85 i~~li~~Gv~Gl~v~-GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~st~~ai~la~~a~~~Gadav~v~pP~ 163 (359)
++...+.|++.+.+. |.+++...... .+.++.+.+.. .+||++.-| -+.+ .+..+.+.|||++.+..-.
T Consensus 124 ~~~a~~~GaD~I~~~pg~~~~~~~~~~---~~~l~~l~~~~--~iPI~a~GG-I~~~----n~~~~l~aGAdgv~vGsaI 193 (430)
T PRK07028 124 AVELEELGVDYINVHVGIDQQMLGKDP---LELLKEVSEEV--SIPIAVAGG-LDAE----TAAKAVAAGADIVIVGGNI 193 (430)
T ss_pred HHHHHhcCCCEEEEEeccchhhcCCCh---HHHHHHHHhhC--CCcEEEECC-CCHH----HHHHHHHcCCCEEEEChHH
Confidence 455567899987543 22232222222 23455555543 378877433 3443 3566677899999999887
Q ss_pred CCCCCHHHHHHHHHHHHhc-CCeEEEeCCCCCCCCCCHHHHHHHhcC
Q 018253 164 YGKTSLEGLISHFDSVLSM-GPTIIYNVPSRTGQDIPPRVIHTMAQS 209 (359)
Q Consensus 164 y~~~s~~~l~~yf~~Ia~a-~PiiiYn~P~~tg~~ls~e~l~~La~~ 209 (359)
+...+.++..+.|++..+. .|.-+-.+ -..++++++++|.++
T Consensus 194 ~~~~d~~~~~~~l~~~i~~~~~~~~~~~----~~~~~~~~~~~l~~~ 236 (430)
T PRK07028 194 IKSADVTEAARKIREAIDSGKPVKIDKF----KKSLDEEIREIFMQV 236 (430)
T ss_pred cCCCCHHHHHHHHHHHHhccCCcccccc----ccCCCHHHHHHhcCC
Confidence 7767777777777776655 45544332 124778888888754
No 400
>PF01068 DNA_ligase_A_M: ATP dependent DNA ligase domain; InterPro: IPR012310 DNA ligase (polydeoxyribonucleotide synthase) is the enzyme that joins two DNA fragments by catalysing the formation of an internucleotide ester bond between phosphate and deoxyribose. It is active during DNA replication, DNA repair and DNA recombination. There are two forms of DNA ligase, one requires ATP (6.5.1.1 from EC), the other NAD (6.5.1.2 from EC), the latter being restricted to eubacteria. Eukaryotic, archaebacterial, viral and some eubacterial DNA ligases are ATP-dependent. The first step in the ligation reaction is the formation of a covalent enzyme-AMP complex. The co-factor ATP is cleaved to pyrophosphate and AMP, with the AMP being covalently joined to a highly conserved lysine residue in the active site of the ligase. The activated AMP residue is then transferred to the 5'phosphate of the nick, before the nick is sealed by phosphodiester-bond formation and AMP elimination [,]. Vertebrate cells encode three well-characterised DNA ligases (DNA ligases I, III and IV), all of which are related in structure and sequence. With the exception of the atypically small PBCV-1 viral enzyme, two regions of primary sequence are common to all members of the family. The catalytic region comprises six conserved sequence motifs (I, III, IIIa, IV, V-VI), motif I includes the lysine residue that is adenylated in the first step of the ligation reaction. The function of the second, less well-conserved region is unknown. When folded, each protein comprises of two distinct sub-domains: a large amino-terminal sub-domain ('domain 1') and a smaller carboxy-terminal sub-domain ('domain 2'). The ATP-binding site of the enzyme lies in the cleft between the two sub-domains. Domain 1 consists of two antiparallel beta sheets flanked by alpha helices, whereas domain 2 consists of a five-stranded beta barrel and a single alpha helix, which form the oligonucleotide-binding fold [, ]. This domain belongs to a more diverse superfamily, including catalytic domain of the mRNA capping enzyme (IPR001339 from INTERPRO) and NAD-dependent DNA ligase (IPR001679 from INTERPRO) []. ; GO: 0003910 DNA ligase (ATP) activity, 0005524 ATP binding, 0006281 DNA repair, 0006310 DNA recombination; PDB: 3RR5_A 1X9N_A 2CFM_A 3QWU_B 3GDE_A 2Q2U_C 2Q2T_A 1FVI_A 1P8L_A 2VUG_A ....
Probab=76.87 E-value=8.3 Score=34.38 Aligned_cols=58 Identities=14% Similarity=0.168 Sum_probs=48.6
Q ss_pred cCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCCCHHHHHHHHHHHHhCCCCEEEEcCC
Q 018253 105 GQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINP 162 (359)
Q Consensus 105 ~~~LT~~Er~~li~~~v~~~~grvpViagvg~~st~~ai~la~~a~~~Gadav~v~pP 162 (359)
...++.+||+++++.++....+++.++-..-..+.++.-++.+.+.+.|..++|+=.|
T Consensus 128 l~~~p~~eR~~~L~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~EG~v~K~~ 185 (202)
T PF01068_consen 128 LLDLPYEERRELLEELLEPPPPRIRIVESYVVNSKEELEELFEEAIDQGFEGLVLKDP 185 (202)
T ss_dssp CTTSCHHHHHHHHHHHBG-BTSSEEEEEEEEESSHHHHHHHHHHHHHTTSSEEEEEET
T ss_pred eeeccHHHHHHHHHHhhccCCCceeEeeeecCCCHHHHHHHHHHHHHcCCceEEEECC
Confidence 5678999999999999966667777776666678999999999999999999999554
No 401
>PRK10481 hypothetical protein; Provisional
Probab=76.86 E-value=64 Score=30.04 Aligned_cols=125 Identities=14% Similarity=0.129 Sum_probs=79.1
Q ss_pred EeeecCCCCCCC---CCHHH----HHHHHHHHHHCCCCEEEEccCccCcCCCCHHH-----HHHHHHHHHHhhCCCcEEE
Q 018253 64 TAIKTPYLPDGR---FDLEA----YDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDE-----HIMLIGHTVNCFGASVKVI 131 (359)
Q Consensus 64 ~al~TPF~~dg~---ID~~~----l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~E-----r~~li~~~v~~~~grvpVi 131 (359)
.+++|=++ ||+ +-.+. +.+.++.|-+.|++.++ ...||+|+.|...- =.+++..++....+.-.
T Consensus 56 ~~lvtrL~-dG~~v~~s~~~v~~~lq~~i~~l~~~g~d~iv-l~Ctgdfp~l~a~r~~l~~P~~~i~~lv~Al~~g~r-- 131 (224)
T PRK10481 56 DVLVTRLN-DGQQVHVSKQKVERDLQSVIEVLDNQGYDVIL-LLCTGEFPSLTARNAILLEPSRILPPLVAAIVGGHQ-- 131 (224)
T ss_pred ceeEEEec-CCCEEEEEHHHHHHHHHHHHHHHHhCCCCEEE-EEecCCCCCccccCccccCchhhHHHHHHHhcCCCe--
Confidence 45566665 553 44444 55555666679999866 66789988877621 22344555554433212
Q ss_pred EecCCCCHHHHHHHHHHHHhCCCCEEEEc-CCCCCCCCHHHHHHHHHHHHhc-CCeEEEeCCCCCCCC
Q 018253 132 GNTGSNSTREAIHATEQGFAVGMHAALHI-NPYYGKTSLEGLISHFDSVLSM-GPTIIYNVPSRTGQD 197 (359)
Q Consensus 132 agvg~~st~~ai~la~~a~~~Gadav~v~-pP~y~~~s~~~l~~yf~~Ia~a-~PiiiYn~P~~tg~~ 197 (359)
+||-....++.-+..+...+.|.+-.+.. .|| ..+.+.+.+.-+++.+. ..+++.+ .+|+.
T Consensus 132 iGVitP~~~qi~~~~~kw~~~G~~v~~~~aspy--~~~~~~l~~aa~~L~~~gaD~Ivl~---C~G~~ 194 (224)
T PRK10481 132 VGVIVPVEEQLAQQAQKWQVLQKPPVFALASPY--HGSEEELIDAGKELLDQGADVIVLD---CLGYH 194 (224)
T ss_pred EEEEEeCHHHHHHHHHHHHhcCCceeEeecCCC--CCCHHHHHHHHHHhhcCCCCEEEEe---CCCcC
Confidence 24445567777777788888898865544 454 26777888888888765 6788887 45544
No 402
>PRK09195 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=76.85 E-value=31 Score=33.31 Aligned_cols=121 Identities=15% Similarity=0.222 Sum_probs=0.0
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCC-cEE------EEecCCC-----------
Q 018253 76 FDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGAS-VKV------IGNTGSN----------- 137 (359)
Q Consensus 76 ID~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~gr-vpV------iagvg~~----------- 137 (359)
+|...-...+...++.|.+.+.+=|| .|+.+|=.+..+.+++.+... +.| |.|....
T Consensus 81 LDHg~~~e~i~~Ai~~GftSVM~DgS-----~l~~eeNi~~T~~vv~~Ah~~gv~VEaElG~vgg~e~~~~~~~~~~~~T 155 (284)
T PRK09195 81 LDHHEKFDDIAQKVRSGVRSVMIDGS-----HLPFAQNISLVKEVVDFCHRFDVSVEAELGRLGGQEDDLQVDEADALYT 155 (284)
T ss_pred CCCCCCHHHHHHHHHcCCCEEEeCCC-----CCCHHHHHHHHHHHHHHHHHcCCEEEEEEecccCcccCcccccccccCC
Q ss_pred CHHHHHHHHHHHHhCCCCEEEEcCCCC---CCCCHHHHHHHHHHHHhc--CCeEEEeCCCCCCCCCCHHHHHHHhcC
Q 018253 138 STREAIHATEQGFAVGMHAALHINPYY---GKTSLEGLISHFDSVLSM--GPTIIYNVPSRTGQDIPPRVIHTMAQS 209 (359)
Q Consensus 138 st~~ai~la~~a~~~Gadav~v~pP~y---~~~s~~~l~~yf~~Ia~a--~PiiiYn~P~~tg~~ls~e~l~~La~~ 209 (359)
+.+++.++.+ +.|+|++.+.--.- ++..++==++-.++|.+. .|++++ -|..++.+.+++..+.
T Consensus 156 ~peea~~Fv~---~TgvD~LAvaiGt~HG~y~~~p~Ld~~~L~~I~~~~~vPLVLH-----GgSG~~~e~~~~ai~~ 224 (284)
T PRK09195 156 DPAQAREFVE---ATGIDSLAVAIGTAHGMYKGEPKLDFDRLENIRQWVNIPLVLH-----GASGLPTKDIQQTIKL 224 (284)
T ss_pred CHHHHHHHHH---HHCcCEEeeccCccccccCCCCcCCHHHHHHHHHHhCCCeEEe-----cCCCCCHHHHHHHHHc
No 403
>PRK08227 autoinducer 2 aldolase; Validated
Probab=76.81 E-value=64 Score=30.80 Aligned_cols=64 Identities=13% Similarity=0.118 Sum_probs=50.1
Q ss_pred HHHHHHHhhCCCcEEEE-ecCCCCHHHHHHHHHHHHhCCCCEEEEcCCCCCCCCHHHHHHHHHHHHh
Q 018253 116 LIGHTVNCFGASVKVIG-NTGSNSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLS 181 (359)
Q Consensus 116 li~~~v~~~~grvpVia-gvg~~st~~ai~la~~a~~~Gadav~v~pP~y~~~s~~~l~~yf~~Ia~ 181 (359)
-++.+++ +.++||++ |=...+.++.+++++.+.+.||.++.+---.|...++..+.+-++.|..
T Consensus 183 ~f~~vv~--a~~vPVviaGG~k~~~~~~L~~v~~ai~aGa~Gv~~GRNIfQ~~~p~~~~~al~~IVh 247 (264)
T PRK08227 183 GFERITA--GCPVPIVIAGGKKLPERDALEMCYQAIDEGASGVDMGRNIFQSEHPVAMIKAVHAVVH 247 (264)
T ss_pred HHHHHHH--cCCCcEEEeCCCCCCHHHHHHHHHHHHHcCCceeeechhhhccCCHHHHHHHHHHHHh
Confidence 3445555 34688765 4444478999999999999999999999888888888888888888764
No 404
>cd03309 CmuC_like CmuC_like. Proteins similar to the putative corrinoid methyltransferase CmuC. Its function has been inferred from sequence similarity to the methyltransferases CmuA and MtaA. Mutants of Methylobacterium sp. disrupted in cmuC and purU appear deficient in some step of chloromethane metabolism.
Probab=76.42 E-value=19 Score=35.29 Aligned_cols=76 Identities=11% Similarity=0.122 Sum_probs=46.9
Q ss_pred HHHHHHHHHHC-CCCEEEEccCcc--CcCCCCHHHHHHHH----HHHHHhhCC--CcEEEEecCCCCHHHHHHHHHHHHh
Q 018253 81 YDDLVNMQIVN-GAEGMIVGGTTG--EGQLMSWDEHIMLI----GHTVNCFGA--SVKVIGNTGSNSTREAIHATEQGFA 151 (359)
Q Consensus 81 l~~li~~li~~-Gv~Gl~v~GstG--E~~~LT~~Er~~li----~~~v~~~~g--rvpViagvg~~st~~ai~la~~a~~ 151 (359)
..++++.++++ |++++.+.-+-| ....||.++.++++ +.+++.++. ..|+|..+-++.+ .+.....+
T Consensus 157 ~i~y~~~qiea~Gad~I~i~Ddwa~~~~~~LSpe~f~efv~P~~krIi~~ik~~~g~piilH~cG~~~----~~l~~~~e 232 (321)
T cd03309 157 KLKLYERRIKHLEPDLLVYHDDLGSQKGSFISPATFREFILPRMQRIFDFLRSNTSALIVHHSCGAAA----SLVPSMAE 232 (321)
T ss_pred HHHHHHHHHHHhCCCEEEEeCCCccccCCccCHHHHHHHHHHHHHHHHHHHHhccCCceEEEeCCCcH----HHHHHHHH
Confidence 34445556667 999999854322 23679999988766 355555542 3577776655432 23444455
Q ss_pred CCCCEEEEc
Q 018253 152 VGMHAALHI 160 (359)
Q Consensus 152 ~Gadav~v~ 160 (359)
.|+|.+.+-
T Consensus 233 ~g~dvl~~d 241 (321)
T cd03309 233 MGVDSWNVV 241 (321)
T ss_pred cCCCEEEec
Confidence 788877753
No 405
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=76.30 E-value=17 Score=35.79 Aligned_cols=74 Identities=12% Similarity=0.128 Sum_probs=44.7
Q ss_pred HHHHHHHCCCCEEEEccCccCcCCCCHHH--------HHHHHHHHHHhhCCCcEEEEecCCCCHHHHHHHHHHHHhCCCC
Q 018253 84 LVNMQIVNGAEGMIVGGTTGEGQLMSWDE--------HIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMH 155 (359)
Q Consensus 84 li~~li~~Gv~Gl~v~GstGE~~~LT~~E--------r~~li~~~v~~~~grvpViagvg~~st~~ai~la~~a~~~Gad 155 (359)
-+..+++.|++++.+.++-|-. .-|... ....+..+++.+ ++|||+.=|=.+..++. .|.++|||
T Consensus 153 ~a~~l~~aGad~i~vg~~~G~~-~~t~~~~g~~~~~w~l~ai~~~~~~~--~ipVIAdGGI~~~~Di~----KaLa~GA~ 225 (326)
T PRK05458 153 AVRELENAGADATKVGIGPGKV-CITKIKTGFGTGGWQLAALRWCAKAA--RKPIIADGGIRTHGDIA----KSIRFGAT 225 (326)
T ss_pred HHHHHHHcCcCEEEECCCCCcc-cccccccCCCCCccHHHHHHHHHHHc--CCCEEEeCCCCCHHHHH----HHHHhCCC
Confidence 4556778999998877555522 111111 233355555544 58999854444444443 45567999
Q ss_pred EEEEcCCCC
Q 018253 156 AALHINPYY 164 (359)
Q Consensus 156 av~v~pP~y 164 (359)
+||+-.++.
T Consensus 226 aV~vG~~~~ 234 (326)
T PRK05458 226 MVMIGSLFA 234 (326)
T ss_pred EEEechhhc
Confidence 999996654
No 406
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=76.28 E-value=56 Score=29.09 Aligned_cols=151 Identities=15% Similarity=0.112 Sum_probs=87.5
Q ss_pred CHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCCCHHHHHHHHHHHHhCCCCE
Q 018253 77 DLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHA 156 (359)
Q Consensus 77 D~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~st~~ai~la~~a~~~Gada 156 (359)
|.+.....++.+++.|++.+-+-=++. ...+.++.+.+..+ + +.+|.|..-+.+. ++.+.++|+|+
T Consensus 14 ~~~~~~~~~~~l~~~G~~~vev~~~~~--------~~~~~i~~l~~~~~-~--~~iGag~v~~~~~---~~~a~~~Ga~~ 79 (190)
T cd00452 14 DAEDALALAEALIEGGIRAIEITLRTP--------GALEAIRALRKEFP-E--ALIGAGTVLTPEQ---ADAAIAAGAQF 79 (190)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEeCCCh--------hHHHHHHHHHHHCC-C--CEEEEEeCCCHHH---HHHHHHcCCCE
Confidence 688899999999999999887764433 24446766666554 3 5666666555554 45666799999
Q ss_pred EEEcCCCCCCCCHHHHHHHHHHHHhcCCeEEEeCCCCCCCCCCHHHHHHHhc-CCCeEEEeccCch--hh-Hhhhh----
Q 018253 157 ALHINPYYGKTSLEGLISHFDSVLSMGPTIIYNVPSRTGQDIPPRVIHTMAQ-SPNLAGVKECVGN--DR-VEHYT---- 228 (359)
Q Consensus 157 v~v~pP~y~~~s~~~l~~yf~~Ia~a~PiiiYn~P~~tg~~ls~e~l~~La~-~pnivGiK~ss~d--~~-l~~~~---- 228 (359)
++. |.. ..++.++-+.. ..|++ | |+. +++.+.+..+ -..++++ +.... .. +....
T Consensus 80 i~~--p~~----~~~~~~~~~~~--~~~~i----~---gv~-t~~e~~~A~~~Gad~i~~-~p~~~~g~~~~~~l~~~~~ 142 (190)
T cd00452 80 IVS--PGL----DPEVVKAANRA--GIPLL----P---GVA-TPTEIMQALELGADIVKL-FPAEAVGPAYIKALKGPFP 142 (190)
T ss_pred EEc--CCC----CHHHHHHHHHc--CCcEE----C---CcC-CHHHHHHHHHCCCCEEEE-cCCcccCHHHHHHHHhhCC
Confidence 863 322 24444443332 13443 3 444 6766665554 3566665 22211 11 22221
Q ss_pred CCceEEEecCCchhhhhhhhcCCceeeccc
Q 018253 229 GNGIVVWSGNDDQCHDARWNHGATGVISVT 258 (359)
Q Consensus 229 ~~~~~v~~G~d~~~~~~~l~~Ga~G~is~~ 258 (359)
+-.+-...|-+..-+...+..|++|+..+.
T Consensus 143 ~~p~~a~GGI~~~n~~~~~~~G~~~v~v~s 172 (190)
T cd00452 143 QVRFMPTGGVSLDNAAEWLAAGVVAVGGGS 172 (190)
T ss_pred CCeEEEeCCCCHHHHHHHHHCCCEEEEEch
Confidence 123444457665555667888988776543
No 407
>PRK09485 mmuM homocysteine methyltransferase; Provisional
Probab=76.08 E-value=72 Score=30.86 Aligned_cols=102 Identities=17% Similarity=0.102 Sum_probs=66.7
Q ss_pred CCCHHHHHHH----HHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCC---------CCHHH
Q 018253 75 RFDLEAYDDL----VNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGS---------NSTRE 141 (359)
Q Consensus 75 ~ID~~~l~~l----i~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~---------~st~~ 141 (359)
.++.+.+.+. ++.+++.|||.|++ -|. -+.+|-+.+++.+.+... .+|+++.+.- .+.++
T Consensus 132 ~~~~~~~~~~~~~q~~~l~~~gvD~i~~-ET~-----~~~~E~~~~~~~~~~~~~-~~pv~is~~~~~~g~l~~G~~~~~ 204 (304)
T PRK09485 132 GLSEEELQDFHRPRIEALAEAGADLLAC-ETI-----PNLDEAEALVELLKEEFP-GVPAWLSFTLRDGTHISDGTPLAE 204 (304)
T ss_pred CCCHHHHHHHHHHHHHHHhhCCCCEEEE-ecc-----CCHHHHHHHHHHHHHhcC-CCcEEEEEEeCCCCcCCCCCCHHH
Confidence 4677776655 88888999998774 222 257788888877765443 5799886532 34666
Q ss_pred HHHHHHHHHhCCCCEEEEcCCCCCCCCHHHHHHHHHHHHhc--CCeEEEeC
Q 018253 142 AIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSM--GPTIIYNV 190 (359)
Q Consensus 142 ai~la~~a~~~Gadav~v~pP~y~~~s~~~l~~yf~~Ia~a--~PiiiYn~ 190 (359)
+++.... ..+++++.+=- ..++.+....+.+.+. .|+++|=+
T Consensus 205 ~~~~l~~--~~~~~~iGiNC-----~~p~~~~~~l~~~~~~~~~pl~~~PN 248 (304)
T PRK09485 205 AAALLAA--SPQVVAVGVNC-----TAPELVTAAIAALRAVTDKPLVVYPN 248 (304)
T ss_pred HHHHHhc--CCCceEEEecC-----CCHHHHHHHHHHHHhccCCcEEEECC
Confidence 6666642 12466666532 2456777777777664 68998854
No 408
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=76.07 E-value=46 Score=35.47 Aligned_cols=101 Identities=12% Similarity=0.136 Sum_probs=68.3
Q ss_pred HHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEec---CC--CCHHHHHHHHHHHHhCC
Q 018253 79 EAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNT---GS--NSTREAIHATEQGFAVG 153 (359)
Q Consensus 79 ~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagv---g~--~st~~ai~la~~a~~~G 153 (359)
+..+..++..+++|++-+-++-+..+. +.-...++.+.+ .+. .|.+.+ .+ .+.+..+++++.+.++|
T Consensus 91 dvv~~~v~~a~~~Gvd~irif~~lnd~-----~n~~~~i~~ak~-~G~--~v~~~i~~t~~p~~~~~~~~~~~~~~~~~G 162 (582)
T TIGR01108 91 DVVERFVKKAVENGMDVFRIFDALNDP-----RNLQAAIQAAKK-HGA--HAQGTISYTTSPVHTLETYLDLAEELLEMG 162 (582)
T ss_pred hhHHHHHHHHHHCCCCEEEEEEecCcH-----HHHHHHHHHHHH-cCC--EEEEEEEeccCCCCCHHHHHHHHHHHHHcC
Confidence 567788999999999999888777774 222222333222 222 333322 22 25788999999999999
Q ss_pred CCEEEEcCCCCCCCCHHHHHHHHHHHHhc--CCeEEE
Q 018253 154 MHAALHINPYYGKTSLEGLISHFDSVLSM--GPTIIY 188 (359)
Q Consensus 154 adav~v~pP~y~~~s~~~l~~yf~~Ia~a--~PiiiY 188 (359)
||.+.+.- .....++.++.+.++++.+. .||-++
T Consensus 163 ad~I~i~D-t~G~~~P~~v~~lv~~lk~~~~~pi~~H 198 (582)
T TIGR01108 163 VDSICIKD-MAGILTPKAAYELVSALKKRFGLPVHLH 198 (582)
T ss_pred CCEEEECC-CCCCcCHHHHHHHHHHHHHhCCCceEEE
Confidence 99776653 34456789999999999877 465543
No 409
>TIGR00538 hemN oxygen-independent coproporphyrinogen III oxidase. This model represents HemN, the oxygen-independent coproporphyrinogen III oxidase that replaces HemF function under anaerobic conditions. Several species, including E. coli, Helicobacter pylori, and Aquifex aeolicus, have both a member of this family and a member of another, closely related family for which there is no evidence of coproporphyrinogen III oxidase activity. Members of this family have a perfectly conserved motif PYRT[SC]YP in a region N-terminal to the region of homology with the related uncharacterized protein.
Probab=75.99 E-value=42 Score=34.38 Aligned_cols=113 Identities=13% Similarity=0.136 Sum_probs=69.4
Q ss_pred HHHHHHHHHHHHH-----CCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhC--CCcEEEEecCCCCHHHHHHHHHHHH
Q 018253 78 LEAYDDLVNMQIV-----NGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFG--ASVKVIGNTGSNSTREAIHATEQGF 150 (359)
Q Consensus 78 ~~~l~~li~~li~-----~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~--grvpViagvg~~st~~ai~la~~a~ 150 (359)
.+.+.+-++.+.+ .++.-|+++| |+...|+.++-.++++.+.+... ..+.+-+-+...+ -+-+..+..+
T Consensus 83 ~~~L~~Ei~~~~~~~~~~~~v~~I~fgG--GtP~~l~~~~l~~ll~~i~~~~~~~~~~eitie~np~~--l~~e~l~~lk 158 (455)
T TIGR00538 83 LDALEKEIALVAPLFDGNRHVSQLHWGG--GTPTYLSPEQISRLMKLIRENFPFNADAEISIEIDPRY--ITKDVIDALR 158 (455)
T ss_pred HHHHHHHHHHHHHhcCCCCceEEEEECC--CCcCCCCHHHHHHHHHHHHHhCCCCCCCeEEEEeccCc--CCHHHHHHHH
Confidence 3444444554432 3788888887 78889999999999999988642 2222322222111 1335566666
Q ss_pred hCCCCEEEEcCCCCC--------C-CCHHHHHHHHHHHHhc-CC---e-EEEeCCCCC
Q 018253 151 AVGMHAALHINPYYG--------K-TSLEGLISHFDSVLSM-GP---T-IIYNVPSRT 194 (359)
Q Consensus 151 ~~Gadav~v~pP~y~--------~-~s~~~l~~yf~~Ia~a-~P---i-iiYn~P~~t 194 (359)
++|+..+.+-.-.+. + .+.+.+.+-++.+.++ .+ + ++|..|..|
T Consensus 159 ~~G~~risiGvqS~~~~~l~~l~r~~~~~~~~~ai~~l~~~G~~~v~~dli~GlPgqt 216 (455)
T TIGR00538 159 DEGFNRLSFGVQDFNKEVQQAVNRIQPEEMIFELMNHAREAGFTSINIDLIYGLPKQT 216 (455)
T ss_pred HcCCCEEEEcCCCCCHHHHHHhCCCCCHHHHHHHHHHHHhcCCCcEEEeEEeeCCCCC
Confidence 679998888755442 2 3556666666666655 33 2 678888643
No 410
>PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds []. Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A.
Probab=75.71 E-value=7.9 Score=36.53 Aligned_cols=78 Identities=15% Similarity=0.238 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCCC--------HHHHHHHHHHHH
Q 018253 79 EAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNS--------TREAIHATEQGF 150 (359)
Q Consensus 79 ~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~s--------t~~ai~la~~a~ 150 (359)
..+.++++++-+.|.+.|=+.-.|- .|+.++|.++++.+.+ ....|+.-+|.-+ +.+-|+++++.-
T Consensus 84 ~~~~~yl~~~k~lGf~~IEiSdGti---~l~~~~r~~~I~~~~~---~Gf~v~~EvG~K~~~~~~~~~~~~~i~~~~~dL 157 (244)
T PF02679_consen 84 GKFDEYLEECKELGFDAIEISDGTI---DLPEEERLRLIRKAKE---EGFKVLSEVGKKDPESDFSLDPEELIEQAKRDL 157 (244)
T ss_dssp T-HHHHHHHHHHCT-SEEEE--SSS------HHHHHHHHHHHCC---TTSEEEEEES-SSHHHHTT--CCHHHHHHHHHH
T ss_pred ChHHHHHHHHHHcCCCEEEecCCce---eCCHHHHHHHHHHHHH---CCCEEeecccCCCchhcccCCHHHHHHHHHHHH
Confidence 3577888888888998887655543 5889999999877653 2367777776543 456788888888
Q ss_pred hCCCCEEEEcCC
Q 018253 151 AVGMHAALHINP 162 (359)
Q Consensus 151 ~~Gadav~v~pP 162 (359)
++||+.|++-.-
T Consensus 158 eAGA~~ViiEar 169 (244)
T PF02679_consen 158 EAGADKVIIEAR 169 (244)
T ss_dssp HHTECEEEE--T
T ss_pred HCCCCEEEEeee
Confidence 899999988644
No 411
>TIGR01463 mtaA_cmuA methyltransferase, MtaA/CmuA family. This subfamily is closely related to, yet is distinct from, uroporphyrinogen decarboxylase (EC 4.1.1.37). It includes two isozymes from Methanosarcina barkeri of methylcobalamin--coenzyme M methyltransferase. It also includes a chloromethane utilization protein, CmuA, which transfers the methyl group of chloromethane to a corrinoid protein.
Probab=75.65 E-value=27 Score=34.00 Aligned_cols=74 Identities=7% Similarity=-0.064 Sum_probs=48.3
Q ss_pred HHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHH----HHHHHhhCC-CcEEEEecCCCCHHHHHHHHHHHHhCCCC
Q 018253 81 YDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLI----GHTVNCFGA-SVKVIGNTGSNSTREAIHATEQGFAVGMH 155 (359)
Q Consensus 81 l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li----~~~v~~~~g-rvpViagvg~~st~~ai~la~~a~~~Gad 155 (359)
+.++++.+++.|++++++.-..+....+|.++..+.+ +.+++.+.. ..+.+.++.++.. .+.....+.|+|
T Consensus 182 ~~~~~~~~~~~Gad~I~i~dp~a~~~~lsp~~f~e~~~p~~k~i~~~i~~~g~~~ilH~CG~~~----~~~~~l~~~g~d 257 (340)
T TIGR01463 182 VIAYAKAMVEAGADVIAIADPFASSDLISPETYKEFGLPYQKRLFAYIKEIGGITVLHICGFTQ----PILRDIANNGCF 257 (340)
T ss_pred HHHHHHHHHHcCCCEEEecCCccCccccCHHHHHHHHHHHHHHHHHHHHhcCCceEEEECCCch----hhHHHHHHhCCC
Confidence 5666677789999999998888877889999877665 444444421 1244455554432 234445667888
Q ss_pred EEE
Q 018253 156 AAL 158 (359)
Q Consensus 156 av~ 158 (359)
.+.
T Consensus 258 ~ls 260 (340)
T TIGR01463 258 GFS 260 (340)
T ss_pred EEe
Confidence 755
No 412
>PRK05265 pyridoxine 5'-phosphate synthase; Provisional
Probab=75.57 E-value=26 Score=32.97 Aligned_cols=185 Identities=12% Similarity=0.101 Sum_probs=113.9
Q ss_pred cccccCCCCCCCCCCCcccccCCCCCCCccccccccCCccccc---CCceEEeeecCCCCCCCCCHHHHHHHHHHHHHCC
Q 018253 16 PVSVSCTGKNRKWRPPQAAIIPNYHLPMRSFEVKNRTSAEDIK---ALRLITAIKTPYLPDGRFDLEAYDDLVNMQIVNG 92 (359)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~Gi~~al~TPF~~dg~ID~~~l~~li~~li~~G 92 (359)
-|++-.+.|...|..|..+...---.=...|-++=|-+..+|+ ...+-..+-|||+=.+....+ +++...+--
T Consensus 11 hvAtLRnaR~~~~Pd~v~aA~~a~~aGAdgITvHlReDrRHI~d~Dv~~L~~~~~~~lNlE~a~~~e----m~~ia~~~k 86 (239)
T PRK05265 11 HIATLRNARGTNYPDPVRAALIAEQAGADGITVHLREDRRHIRDRDVRLLRETLKTELNLEMAATEE----MLDIALEVK 86 (239)
T ss_pred hheeccccCCCCCCCHHHHHHHHHHcCCCEEEecCCCCcccCCHHHHHHHHHhcCCCEEeccCCCHH----HHHHHHHCC
Confidence 4677788898999999888777766777888887777777664 222334455799877776554 777777777
Q ss_pred CCEEEEcc-----CccCcCCCCHHHHHHHHHHHHHhh-CCCcEEEEecCCCCHHHHHHHHHHHHhCCCCEEEEcC-CCCC
Q 018253 93 AEGMIVGG-----TTGEGQLMSWDEHIMLIGHTVNCF-GASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHIN-PYYG 165 (359)
Q Consensus 93 v~Gl~v~G-----stGE~~~LT~~Er~~li~~~v~~~-~grvpViagvg~~st~~ai~la~~a~~~Gadav~v~p-P~y~ 165 (359)
.+-+.+.- .|.|+- |........++.+++.. +..+.|-.=+ .. ..++.+.|++.|||.|=+-+ ||-.
T Consensus 87 P~~vtLVPE~r~E~TTegG-ldv~~~~~~l~~~i~~L~~~gIrVSLFi-dP----~~~qi~~A~~~GAd~VELhTG~yA~ 160 (239)
T PRK05265 87 PHQVTLVPEKREELTTEGG-LDVAGQFDKLKPAIARLKDAGIRVSLFI-DP----DPEQIEAAAEVGADRIELHTGPYAD 160 (239)
T ss_pred CCEEEECCCCCCCccCCcc-chhhcCHHHHHHHHHHHHHCCCEEEEEe-CC----CHHHHHHHHHhCcCEEEEechhhhc
Confidence 77766543 333332 23333334444444433 2334433222 22 24556777889999995555 4433
Q ss_pred C---CCHHHHHHHHHHHHhc--CCeEEEeCCCCCCCCCCHHHHHHHhcCCCeEEE
Q 018253 166 K---TSLEGLISHFDSVLSM--GPTIIYNVPSRTGQDIPPRVIHTMAQSPNLAGV 215 (359)
Q Consensus 166 ~---~s~~~l~~yf~~Ia~a--~PiiiYn~P~~tg~~ls~e~l~~La~~pnivGi 215 (359)
. ..++++..+...-..+ .-+-+. .|-+|+.+-+..++++|.|.=+
T Consensus 161 a~~~~~~~el~~~~~aa~~a~~lGL~Vn-----AGHgLny~Nv~~i~~ip~i~Ev 210 (239)
T PRK05265 161 AKTEAEAAELERIAKAAKLAASLGLGVN-----AGHGLNYHNVKPIAAIPGIEEL 210 (239)
T ss_pred CCCcchHHHHHHHHHHHHHHHHcCCEEe-----cCCCCCHHhHHHHhhCCCCeEE
Confidence 2 2245544443333223 455554 5778999999999889987544
No 413
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=75.53 E-value=12 Score=34.19 Aligned_cols=74 Identities=16% Similarity=0.118 Sum_probs=48.4
Q ss_pred HHHHHHHHHCCCCEEEEccCccCcCCCC-HHHHHHHHHHHHHhhCCCcEEEEecCCCCHHHHHHHHHHHHhCCCCEEEEc
Q 018253 82 DDLVNMQIVNGAEGMIVGGTTGEGQLMS-WDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHI 160 (359)
Q Consensus 82 ~~li~~li~~Gv~Gl~v~GstGE~~~LT-~~Er~~li~~~v~~~~grvpViagvg~~st~~ai~la~~a~~~Gadav~v~ 160 (359)
..+++.+.+.|++.+.+..-++= ++ ......+++.+.+.+ .+||++|-+=.+.+++ +.+.+.|||.+++.
T Consensus 32 ~~~a~~~~~~g~d~l~v~dl~~~---~~~~~~~~~~i~~i~~~~--~~pv~~~GgI~~~e~~----~~~~~~Gad~vvig 102 (234)
T cd04732 32 VEVAKKWEEAGAKWLHVVDLDGA---KGGEPVNLELIEEIVKAV--GIPVQVGGGIRSLEDI----ERLLDLGVSRVIIG 102 (234)
T ss_pred HHHHHHHHHcCCCEEEEECCCcc---ccCCCCCHHHHHHHHHhc--CCCEEEeCCcCCHHHH----HHHHHcCCCEEEEC
Confidence 34555666799999999854431 11 223456777777766 4899997776665554 44445899999876
Q ss_pred CCCC
Q 018253 161 NPYY 164 (359)
Q Consensus 161 pP~y 164 (359)
.-.+
T Consensus 103 s~~l 106 (234)
T cd04732 103 TAAV 106 (234)
T ss_pred chHH
Confidence 5444
No 414
>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase. These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans []. IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP []. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity, 0055114 oxidation-reduction process; PDB: 3FFS_D 1VRD_A 1JCN_B 1EEP_B 3TSB_B 3USB_B 3TSD_A 4FF0_A 4FEZ_A 3KHJ_D ....
Probab=75.51 E-value=12 Score=37.27 Aligned_cols=78 Identities=18% Similarity=0.137 Sum_probs=0.0
Q ss_pred HHHHHHHHHCCCCEEEEc------cCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCCCHHHHHHHHHHHHhCCCC
Q 018253 82 DDLVNMQIVNGAEGMIVG------GTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMH 155 (359)
Q Consensus 82 ~~li~~li~~Gv~Gl~v~------GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~st~~ai~la~~a~~~Gad 155 (359)
..-.++|++.|+|++-|+ .||-+..-.-..+--.+.+.+...-.-.+|||+-=|-...-+.+...- +|||
T Consensus 160 ~e~a~~L~~aGad~vkVGiGpGsiCtTr~v~GvG~PQ~tAv~~~a~~a~~~~v~iIADGGi~~sGDi~KAla----~GAd 235 (352)
T PF00478_consen 160 YEGAKDLIDAGADAVKVGIGPGSICTTREVTGVGVPQLTAVYECAEAARDYGVPIIADGGIRTSGDIVKALA----AGAD 235 (352)
T ss_dssp HHHHHHHHHTT-SEEEESSSSSTTBHHHHHHSBSCTHHHHHHHHHHHHHCTTSEEEEESS-SSHHHHHHHHH----TT-S
T ss_pred HHHHHHHHHcCCCEEEEeccCCcccccccccccCCcHHHHHHHHHHHhhhccCceeecCCcCcccceeeeee----eccc
Q ss_pred EEEEcCCC
Q 018253 156 AALHINPY 163 (359)
Q Consensus 156 av~v~pP~ 163 (359)
+||+-.++
T Consensus 236 ~VMlG~ll 243 (352)
T PF00478_consen 236 AVMLGSLL 243 (352)
T ss_dssp EEEESTTT
T ss_pred ceeechhh
No 415
>PF05853 DUF849: Prokaryotic protein of unknown function (DUF849); InterPro: IPR008567 This family consists of several hypothetical prokaryotic proteins with no known function.; PDB: 3C6C_A 2Y7G_B 2Y7F_B 2Y7D_D 2Y7E_B 3LOT_A 3FA5_B 3NO5_C 3E02_A 3E49_B ....
Probab=75.51 E-value=4 Score=39.01 Aligned_cols=123 Identities=16% Similarity=0.160 Sum_probs=74.8
Q ss_pred CCCCHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEe---------cCCCCHHHHHH
Q 018253 74 GRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGN---------TGSNSTREAIH 144 (359)
Q Consensus 74 g~ID~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViag---------vg~~st~~ai~ 144 (359)
.+.|.+.+++.++.+-+. +..++++-|||-....+.+||.+.++.+ ...-+.+=.| +..++.....+
T Consensus 55 ~s~d~~~~~e~~~~IR~~-~pd~iv~~Ttg~~~~~~~~~R~~~v~~~---~pd~asl~~gs~n~~~~~~~~~n~~~~~~~ 130 (272)
T PF05853_consen 55 PSLDPELYAEVVEAIRAA-CPDLIVQPTTGGGGGPDPEERLAHVEAW---KPDMASLNPGSMNFGTRDRVYINTPADARE 130 (272)
T ss_dssp EE--HHHHHHHHHHHHHH-STTSEEEEESSTTTTSGHHHHCTHHHHH-----SEEEEE-S-EEESGGCSEE---HHHHHH
T ss_pred cCCCHHHHHHHHHHHHHH-CCCeEEEeCCCCCCCCCHHHHHHHHHhc---CCCeEEecccccccccCCceecCCHHHHHH
Confidence 359999999999988777 5557888999999999999999999987 2222233222 23567899999
Q ss_pred HHHHHHhCCCCEEEEcCCCCCCCCHHHHHHHHHHHHhc----CCeEEEeCCC-CCCCCCCHHHHHHHh
Q 018253 145 ATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSM----GPTIIYNVPS-RTGQDIPPRVIHTMA 207 (359)
Q Consensus 145 la~~a~~~Gadav~v~pP~y~~~s~~~l~~yf~~Ia~a----~PiiiYn~P~-~tg~~ls~e~l~~La 207 (359)
+++.+++.|+.=-+. -.+... +..+..+.+. .|+++--.-+ ..|..-+++.+..+.
T Consensus 131 ~~~~~~e~Gi~pe~e------v~d~~~-l~~~~~l~~~G~l~~p~~~~~vlG~~~g~~~~~~~l~~~l 191 (272)
T PF05853_consen 131 LARRMRERGIKPEIE------VFDPGH-LRNARRLIEKGLLPGPLLVNFVLGVPGGMPATPENLLAML 191 (272)
T ss_dssp HHHHHHHTT-EEEEE------ESSHHH-HHHHHHHHHTTSS-SSEEEEEEES-TTS--S-HHHHHHHH
T ss_pred HHHHHHHcCCeEEEE------EEcHHH-HHHHHHHHHCCCCCCCeEEEEcccCCCCCCCCHHHHHHHH
Confidence 999999999853333 235444 4444445554 2543322212 245666677666654
No 416
>cd07942 DRE_TIM_LeuA Mycobacterium tuberculosis LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Alpha-isopropylmalate synthase (LeuA), a key enzyme in leucine biosynthesis, catalyzes the first committed step in the pathway, converting acetyl-CoA and alpha-ketoisovalerate to alpha-isopropyl malate and CoA. Although the reaction catalyzed by LeuA is similar to that of the Arabidopsis thaliana IPMS1 protein, the two fall into phylogenetically distinct families within the same superfamily. LeuA has and N-terminal TIM barrel catalytic domain, a helical linker domain, and a C-terminal regulatory domain. LeuA forms a homodimer in which the linker domain of one monomer sits over the catalytic domain of the other, inserting residues into the active site that may be important for catalysis. Homologs of LeuA are found in bacteria as well as fungi. This family includes alpha-isopropylmalate synthases I (LEU4) and II (LEU9) from Saccharomyces cerevisiae. This family belong
Probab=75.49 E-value=21 Score=34.44 Aligned_cols=108 Identities=15% Similarity=0.083 Sum_probs=78.5
Q ss_pred eeecCCCC-C-CCCCHHHHHHHHHHHHHC---CCC---EEEEccCccCcCCCCHHHHHHHHHHHHHhhCC--CcEEEEec
Q 018253 65 AIKTPYLP-D-GRFDLEAYDDLVNMQIVN---GAE---GMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGA--SVKVIGNT 134 (359)
Q Consensus 65 al~TPF~~-d-g~ID~~~l~~li~~li~~---Gv~---Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~g--rvpViagv 134 (359)
.+-.||.. | .+.|.+-+.++++.+.+. |++ -|-++-|+| .+++.+-.++++.+.+..+. ++++=++
T Consensus 140 ~~~~~~~~EDasr~~~~~l~~~~~~~~~~~~~g~~~~~~i~laDTvG---~a~P~~v~~~~~~l~~~~~~~~~~~~~~H- 215 (284)
T cd07942 140 DWRFEYSPESFSDTELDFALEVCEAVIDVWQPTPENKIILNLPATVE---VATPNVYADQIEWFCRNLSRRESVIISLH- 215 (284)
T ss_pred eEEEEECCccCCCCCHHHHHHHHHHHHHhhcCCCCcceEEEcccccc---ccCHHHHHHHHHHHHHhcCCCCCceEEEE-
Confidence 44566653 3 359999999999999886 555 788899999 67888888888888877654 2444333
Q ss_pred CCCCHHHHHHHHHHHHhCCCCEEEEcCCCC-C----CCCHHHHHHHHH
Q 018253 135 GSNSTREAIHATEQGFAVGMHAALHINPYY-G----KTSLEGLISHFD 177 (359)
Q Consensus 135 g~~st~~ai~la~~a~~~Gadav~v~pP~y-~----~~s~~~l~~yf~ 177 (359)
.+++..-+++.+-.|.++|++.+-.. |+- . ...-|+++.+++
T Consensus 216 ~Hnd~G~a~AN~laA~~aG~~~id~~-~~g~GeRaGN~~~E~lv~~l~ 262 (284)
T cd07942 216 PHNDRGTGVAAAELALLAGADRVEGT-LFGNGERTGNVDLVTLALNLY 262 (284)
T ss_pred ecCCCchHHHHHHHHHHhCCCEEEee-CccCCccccchhHHHHHHHHH
Confidence 46788999999999999999988754 332 1 123456666554
No 417
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=75.47 E-value=39 Score=28.69 Aligned_cols=74 Identities=8% Similarity=0.047 Sum_probs=51.6
Q ss_pred HHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCC-CCHHHHHHHHHHHHhCCCCEEE
Q 018253 81 YDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGS-NSTREAIHATEQGFAVGMHAAL 158 (359)
Q Consensus 81 l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~-~st~~ai~la~~a~~~Gadav~ 158 (359)
.+..++..++.+++-+.+.+..|. |.+.-.++++...+.--.++||++|=.- ...++.-+-.+..+++|+|++.
T Consensus 39 ~e~~v~aa~~~~adiVglS~L~t~----~~~~~~~~~~~l~~~gl~~v~vivGG~~~i~~~d~~~~~~~L~~~Gv~~vf 113 (128)
T cd02072 39 QEEFIDAAIETDADAILVSSLYGH----GEIDCKGLREKCDEAGLKDILLYVGGNLVVGKQDFEDVEKRFKEMGFDRVF 113 (128)
T ss_pred HHHHHHHHHHcCCCEEEEeccccC----CHHHHHHHHHHHHHCCCCCCeEEEECCCCCChhhhHHHHHHHHHcCCCEEE
Confidence 466777888889998888776665 6677788888776643336888886432 2445555555667789998874
No 418
>cd00003 PNPsynthase Pyridoxine 5'-phosphate (PNP) synthase domain; pyridoxal 5'-phosphate is the active form of vitamin B6 that acts as an essential, ubiquitous coenzyme in amino acid metabolism. In bacteria, formation of pyridoxine 5'-phosphate is a step in the biosynthesis of vitamin B6. PNP synthase, a homooctameric enzyme, catalyzes the final step in PNP biosynthesis, the condensation of 1-amino-acetone 3-phosphate and 1-deoxy-D-xylulose 5-phosphate. PNP synthase adopts a TIM barrel topology, intersubunit contacts are mediated by three ''extra'' helices, generating a tetramer of symmetric dimers with shared active sites; the open state has been proposed to accept substrates and to release products, while most of the catalytic events are likely to occur in the closed state; a hydrophilic channel running through the center of the barrel was identified as the essential structural feature that enables PNP synthase to release water molecules produced during the reaction from the closed,
Probab=75.45 E-value=28 Score=32.62 Aligned_cols=186 Identities=12% Similarity=0.101 Sum_probs=113.5
Q ss_pred cccccCCCCCCCCCCCcccccCCCCCCCccccccccCCccccc---CCceEEeeecCCCCCCCCCHHHHHHHHHHHHHCC
Q 018253 16 PVSVSCTGKNRKWRPPQAAIIPNYHLPMRSFEVKNRTSAEDIK---ALRLITAIKTPYLPDGRFDLEAYDDLVNMQIVNG 92 (359)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~Gi~~al~TPF~~dg~ID~~~l~~li~~li~~G 92 (359)
-|++-.+.|...|..|..+...---.=...|-++=|-+..+|+ ...+-..+-|||+=.+.. ...+++...+..
T Consensus 8 hvAtLRnaR~~~~Pdpv~aA~~a~~aGAdgITvHlReDrRHI~d~Dv~~L~~~~~~~lNlE~a~----t~em~~ia~~~k 83 (234)
T cd00003 8 HVATLRNARGTNYPDPVEAALLAEKAGADGITVHLREDRRHIQDRDVRLLRELVRTELNLEMAP----TEEMLEIALEVK 83 (234)
T ss_pred hhhhhhhcCCCCCCCHHHHHHHHHHcCCCEEEecCCCCcCcCCHHHHHHHHHHcCCCEEeccCC----CHHHHHHHHHCC
Confidence 4677788888889988888777666777788887777777664 222334445899877765 446677777777
Q ss_pred CCEEEEcc-----CccCcCCCCHHHHHHHHHHHHHhh-CCCcEEEEecCCCCHHHHHHHHHHHHhCCCCEEEEcCCCC-C
Q 018253 93 AEGMIVGG-----TTGEGQLMSWDEHIMLIGHTVNCF-GASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYY-G 165 (359)
Q Consensus 93 v~Gl~v~G-----stGE~~~LT~~Er~~li~~~v~~~-~grvpViagvg~~st~~ai~la~~a~~~Gadav~v~pP~y-~ 165 (359)
.+-+.+.- .|.|+-. ........++.+++.. +..+.|-.=+-. . .++.+.|++.|||.|=+-+-.| .
T Consensus 84 P~~vtLVPEkr~E~TTegGl-dv~~~~~~l~~~i~~l~~~gI~VSLFiDP-d----~~qi~~A~~~GAd~VELhTG~Ya~ 157 (234)
T cd00003 84 PHQVTLVPEKREELTTEGGL-DVAGQAEKLKPIIERLKDAGIRVSLFIDP-D----PEQIEAAKEVGADRVELHTGPYAN 157 (234)
T ss_pred CCEEEECCCCCCCccCCccc-hhhcCHHHHHHHHHHHHHCCCEEEEEeCC-C----HHHHHHHHHhCcCEEEEechhhhc
Confidence 77766543 3444332 2233333333444433 334554333322 2 4567778889999996655444 4
Q ss_pred CCCHHHHHHHHHHHHh----c--CCeEEEeCCCCCCCCCCHHHHHHHhcCCCeEEEe
Q 018253 166 KTSLEGLISHFDSVLS----M--GPTIIYNVPSRTGQDIPPRVIHTMAQSPNLAGVK 216 (359)
Q Consensus 166 ~~s~~~l~~yf~~Ia~----a--~PiiiYn~P~~tg~~ls~e~l~~La~~pnivGiK 216 (359)
..++++..+-+..+.+ + .-+-+. .|-+|+.+-+..++++|.|.=+-
T Consensus 158 a~~~~~~~~el~~i~~aa~~a~~~GL~Vn-----AGHgLny~Nv~~i~~ip~i~Eln 209 (234)
T cd00003 158 AYDKAEREAELERIAKAAKLARELGLGVN-----AGHGLNYENVKPIAKIPGIAELN 209 (234)
T ss_pred CCCchhHHHHHHHHHHHHHHHHHcCCEEe-----cCCCCCHHHHHHHHhCCCCeEEc
Confidence 4333332333444432 2 455554 57789999999999988876443
No 419
>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial. A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.
Probab=75.33 E-value=16 Score=35.88 Aligned_cols=75 Identities=16% Similarity=0.263 Sum_probs=44.0
Q ss_pred HHHHHHHHHHCCCCEEEEc---cCc-------cCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCCCHHHHHHHHHHHH
Q 018253 81 YDDLVNMQIVNGAEGMIVG---GTT-------GEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGF 150 (359)
Q Consensus 81 l~~li~~li~~Gv~Gl~v~---Gst-------GE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~st~~ai~la~~a~ 150 (359)
....+..|++.|+++|.+. |++ |.... .+ ....+..+.+.. ++|||+-=|=.+-.+.+ .|.
T Consensus 147 t~e~a~~l~~aGad~I~V~~G~G~~~~tr~~~g~g~~-~~--~l~ai~ev~~a~--~~pVIadGGIr~~~Di~----KAL 217 (321)
T TIGR01306 147 TPEAVRELENAGADATKVGIGPGKVCITKIKTGFGTG-GW--QLAALRWCAKAA--RKPIIADGGIRTHGDIA----KSI 217 (321)
T ss_pred CHHHHHHHHHcCcCEEEECCCCCccccceeeeccCCC-ch--HHHHHHHHHHhc--CCeEEEECCcCcHHHHH----HHH
Confidence 4455667888999999877 332 12221 11 123344444433 68999844433444443 344
Q ss_pred hCCCCEEEEcCCCC
Q 018253 151 AVGMHAALHINPYY 164 (359)
Q Consensus 151 ~~Gadav~v~pP~y 164 (359)
.+|||+||+-.++-
T Consensus 218 a~GAd~Vmig~~~a 231 (321)
T TIGR01306 218 RFGASMVMIGSLFA 231 (321)
T ss_pred HcCCCEEeechhhc
Confidence 57999999996654
No 420
>PF13353 Fer4_12: 4Fe-4S single cluster domain; PDB: 3C8F_A 3CB8_A 3T7V_A 2YX0_A 3CAN_A.
Probab=75.30 E-value=9 Score=31.80 Aligned_cols=84 Identities=19% Similarity=0.277 Sum_probs=55.0
Q ss_pred CCCCCHHHHHHHHHHHHHCCCCEEEEccCccCcCCC--CHHHHHHHHHHHHHhhCCCcEEEEecCCCCHHHHHH--HHHH
Q 018253 73 DGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLM--SWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIH--ATEQ 148 (359)
Q Consensus 73 dg~ID~~~l~~li~~li~~Gv~Gl~v~GstGE~~~L--T~~Er~~li~~~v~~~~grvpViagvg~~st~~ai~--la~~ 148 (359)
...++.+.+.+.++.+...++.+|.+.| || +.| ..++-.++++.+.+... .+++..+......+... +.+.
T Consensus 33 ~~~~~~~~~~~ii~~~~~~~~~~i~l~G--GE-Pll~~~~~~l~~i~~~~k~~~~--~~~~~~tng~~~~~~~~~~~~~~ 107 (139)
T PF13353_consen 33 GKELSEEIIEEIIEELKNYGIKGIVLTG--GE-PLLHENYDELLEILKYIKEKFP--KKIIILTNGYTLDELLDELIEEL 107 (139)
T ss_dssp SEEC-HHHHHHHCHHHCCCCCCEEEEEC--ST-GGGHHSHHHHHHHHHHHHHTT---SEEEEEETT--HHHHHHHHHHHH
T ss_pred cccccchhhhhhhhHHhcCCceEEEEcC--CC-eeeeccHhHHHHHHHHHHHhCC--CCeEEEECCCchhHHHhHHHHhc
Confidence 3346789999999999899999999988 99 777 78888999988877654 35666666666666554 3333
Q ss_pred HHhCCCCEEEEcCCCC
Q 018253 149 GFAVGMHAALHINPYY 164 (359)
Q Consensus 149 a~~~Gadav~v~pP~y 164 (359)
....+ +.+--|+.
T Consensus 108 ~~~~~---vsvd~~~~ 120 (139)
T PF13353_consen 108 LDEID---VSVDGPFD 120 (139)
T ss_dssp HHTES---EEEE---S
T ss_pred cCccE---EEEEEech
Confidence 44433 45544444
No 421
>PRK09058 coproporphyrinogen III oxidase; Provisional
Probab=75.19 E-value=47 Score=33.99 Aligned_cols=99 Identities=12% Similarity=0.196 Sum_probs=67.6
Q ss_pred CCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhC--CCcEEEEecCCCCHHHHHHHHHHHHhCCCCEEEEcCCCCC----
Q 018253 92 GAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFG--ASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYYG---- 165 (359)
Q Consensus 92 Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~--grvpViagvg~~st~~ai~la~~a~~~Gadav~v~pP~y~---- 165 (359)
.++.|+++|.| ...|+.++..+|++.+.+..+ ..+.+-+-+.-.+ -+-+..+..+++|++.+.+-.-.+.
T Consensus 114 ~i~~iy~GGGT--Ps~L~~~~l~~ll~~i~~~~~l~~~~eitiE~~p~~--~t~e~l~~l~~aGvnRiSiGVQSf~d~vL 189 (449)
T PRK09058 114 PIHAVYFGGGT--PTALSAEDLARLITALREYLPLAPDCEITLEGRING--FDDEKADAALDAGANRFSIGVQSFNTQVR 189 (449)
T ss_pred eeeEEEECCCc--cccCCHHHHHHHHHHHHHhCCCCCCCEEEEEeCcCc--CCHHHHHHHHHcCCCEEEecCCcCCHHHH
Confidence 47788888755 677999999999999988653 2334333222111 1346667777889999999887663
Q ss_pred ----C-CCHHHHHHHHHHHHhc--CCe---EEEeCCCCC
Q 018253 166 ----K-TSLEGLISHFDSVLSM--GPT---IIYNVPSRT 194 (359)
Q Consensus 166 ----~-~s~~~l~~yf~~Ia~a--~Pi---iiYn~P~~t 194 (359)
+ .+.+++.+.++.+.+. ..| +||..|.-|
T Consensus 190 k~lgR~~~~~~~~~~i~~l~~~g~~~v~~DlI~GlPgqT 228 (449)
T PRK09058 190 RRAGRKDDREEVLARLEELVARDRAAVVCDLIFGLPGQT 228 (449)
T ss_pred HHhCCCCCHHHHHHHHHHHHhCCCCcEEEEEEeeCCCCC
Confidence 2 4677888888877765 233 678888654
No 422
>PRK00115 hemE uroporphyrinogen decarboxylase; Validated
Probab=75.16 E-value=15 Score=36.04 Aligned_cols=73 Identities=18% Similarity=0.044 Sum_probs=47.2
Q ss_pred HHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHH----HHHHHhhCC---CcEEEEecCCCCHHHHHHHHHHHHhCC
Q 018253 81 YDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLI----GHTVNCFGA---SVKVIGNTGSNSTREAIHATEQGFAVG 153 (359)
Q Consensus 81 l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li----~~~v~~~~g---rvpViagvg~~st~~ai~la~~a~~~G 153 (359)
+.++++.++++|++++.++-+++. .||.++..+.+ +.+++.+.. ..|++-.++. +...+ +...+.|
T Consensus 188 ~~~~~~~~~eaGad~i~i~d~~~~--~lsp~~f~ef~~P~~k~i~~~i~~~~~~~~ilh~cg~--~~~~~---~~~~~~~ 260 (346)
T PRK00115 188 TIAYLNAQIEAGAQAVQIFDSWAG--ALSPADYREFVLPYMKRIVAELKREHPDVPVILFGKG--AGELL---EAMAETG 260 (346)
T ss_pred HHHHHHHHHHcCCCEEEEecCccc--cCCHHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEcCC--cHHHH---HHHHhcC
Confidence 345666677899999988877765 69999988765 345554443 3456644442 33333 3456789
Q ss_pred CCEEEEc
Q 018253 154 MHAALHI 160 (359)
Q Consensus 154 adav~v~ 160 (359)
+|++.+-
T Consensus 261 ~~~is~d 267 (346)
T PRK00115 261 ADVVGLD 267 (346)
T ss_pred CCEEeeC
Confidence 9877654
No 423
>TIGR00973 leuA_bact 2-isopropylmalate synthase, bacterial type. A larger family of homologous proteins includes homocitrate synthase, distinct lineages of 2-isopropylmalate synthase, several distinct, uncharacterized, orthologous sets in the Archaea, and other related enzymes. This model describes a family of 2-isopropylmalate synthases found primarily in Bacteria. The homologous families in the Archaea may represent isozymes and/or related enzymes.
Probab=75.13 E-value=30 Score=36.02 Aligned_cols=14 Identities=21% Similarity=0.387 Sum_probs=9.0
Q ss_pred ChHHHHHHHHHcCC
Q 018253 294 NPIPLNTALAQLGV 307 (359)
Q Consensus 294 ~~~~~K~al~~~G~ 307 (359)
+-.++++.|+.+|+
T Consensus 330 G~~~i~~~l~~~g~ 343 (494)
T TIGR00973 330 GRHAFKDRLEELGF 343 (494)
T ss_pred cHHHHHHHHHHhCC
Confidence 34567777777776
No 424
>PRK02615 thiamine-phosphate pyrophosphorylase; Provisional
Probab=75.11 E-value=32 Score=34.19 Aligned_cols=67 Identities=15% Similarity=0.048 Sum_probs=42.8
Q ss_pred EEecCCCCHHHHHHHHHHHHhCCCCEEEEcCCCCC--CCC-HHHHHHHHHHHHhc--CCeEEEeCCCCCCCCCCHHHHHH
Q 018253 131 IGNTGSNSTREAIHATEQGFAVGMHAALHINPYYG--KTS-LEGLISHFDSVLSM--GPTIIYNVPSRTGQDIPPRVIHT 205 (359)
Q Consensus 131 iagvg~~st~~ai~la~~a~~~Gadav~v~pP~y~--~~s-~~~l~~yf~~Ia~a--~PiiiYn~P~~tg~~ls~e~l~~ 205 (359)
++|++..+.++ ++.|.+.|+|.+.+.|-|.. ++. ..--.++++.+++. .|++.. | .|+++.+.+
T Consensus 242 iIG~S~Hs~~e----~~~A~~~GaDYI~lGPvf~T~tKp~~~~~Gle~l~~~~~~~~iPv~Ai------G-GI~~~ni~~ 310 (347)
T PRK02615 242 IIGRSTTNPEE----MAKAIAEGADYIGVGPVFPTPTKPGKAPAGLEYLKYAAKEAPIPWFAI------G-GIDKSNIPE 310 (347)
T ss_pred EEEEecCCHHH----HHHHHHcCCCEEEECCCcCCCCCCCCCCCCHHHHHHHHHhCCCCEEEE------C-CCCHHHHHH
Confidence 67888877655 46667789999888854432 221 11125777777764 576655 2 367888888
Q ss_pred Hhc
Q 018253 206 MAQ 208 (359)
Q Consensus 206 La~ 208 (359)
+.+
T Consensus 311 l~~ 313 (347)
T PRK02615 311 VLQ 313 (347)
T ss_pred HHH
Confidence 864
No 425
>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=75.06 E-value=7.3 Score=38.58 Aligned_cols=91 Identities=11% Similarity=0.068 Sum_probs=56.6
Q ss_pred CCCCCHHHHHHHHHHHHHCCCCEEEEccCccCcCCCC-HHHHHHHHHHHHHhhCCCcEEEEecCCCCHHHHHHHHHHHHh
Q 018253 73 DGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMS-WDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFA 151 (359)
Q Consensus 73 dg~ID~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT-~~Er~~li~~~v~~~~grvpViagvg~~st~~ai~la~~a~~ 151 (359)
+|.++.+....+++.|.+.|++-|-+-+.+-+..... .......++.+.+.++.++|||+ +|...+.+..+ .+.+
T Consensus 229 ~~g~~~ee~~~i~~~L~~~GvD~I~Vs~g~~~~~~~~~~~~~~~~~~~ik~~~~~~iPVi~-~Ggi~t~e~ae---~~l~ 304 (353)
T cd04735 229 EPGIRMEDTLALVDKLADKGLDYLHISLWDFDRKSRRGRDDNQTIMELVKERIAGRLPLIA-VGSINTPDDAL---EALE 304 (353)
T ss_pred CCCCCHHHHHHHHHHHHHcCCCEEEeccCccccccccCCcchHHHHHHHHHHhCCCCCEEE-ECCCCCHHHHH---HHHH
Confidence 3557888899999999999999998866433222111 11123444555555556789885 56654333332 3333
Q ss_pred CCCCEEEEcCCCCCCC
Q 018253 152 VGMHAALHINPYYGKT 167 (359)
Q Consensus 152 ~Gadav~v~pP~y~~~ 167 (359)
.|+|.|++.-|....|
T Consensus 305 ~gaD~V~~gR~liadP 320 (353)
T cd04735 305 TGADLVAIGRGLLVDP 320 (353)
T ss_pred cCCChHHHhHHHHhCc
Confidence 3899999887776554
No 426
>cd06303 PBP1_LuxPQ_Quorum_Sensing Periplasmic binding protein (LuxP) of autoinducer-2 (AI-2) receptor LuxPQ from Vibrio harveyi and its close homologs. Periplasmic binding protein (LuxP) of autoinducer-2 (AI-2) receptor LuxPQ from Vibrio harveyi and its close homologs from other bacteria. The members of this group are highly homologous to a family of periplasmic pentose/hexose sugar-binding proteins that function as the primary receptors for chemotaxis and transport of many sugar based solutes in bacteria and archaea, and that are members of the type I periplasmic binding protein superfamily. The Vibrio harveyi AI-2 receptor consists of two polypeptides, LuxP and LuxQ: LuxP is a periplasmic binding protein that binds AI-2 by clamping it between two domains, LuxQ is an integral membrane protein belonging to the two-component sensor kinase family. Unlike AI-2 bound to the LsrB receptor in Salmonella typhimurium, the Vibrio harveyi AI-2 signaling molecule has an unusual furanosyl borate
Probab=74.97 E-value=71 Score=29.56 Aligned_cols=91 Identities=12% Similarity=0.034 Sum_probs=54.5
Q ss_pred CCceEEeeecCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEE------
Q 018253 59 ALRLITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIG------ 132 (359)
Q Consensus 59 ~~Gi~~al~TPF~~dg~ID~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpVia------ 132 (359)
-.| +..++++++.+.+-|.+...++++.+++.+++|+++.++.. +.++. ++.+.+. +..+|++
T Consensus 28 ~~g-~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~vDgiIv~~~~~-----~~~~~---~~~l~~~--~~p~V~i~~~~~~ 96 (280)
T cd06303 28 ELN-IPYELTQFSSRPGIDHRLQSQQLNEALQSKPDYLIFTLDSL-----RHRKL---IERVLAS--GKTKIILQNITTP 96 (280)
T ss_pred HcC-CcEEEEEeccCcccCHHHHHHHHHHHHHcCCCEEEEcCCch-----hhHHH---HHHHHhC--CCCeEEEeCCCCC
Confidence 455 23345555555556778888999999999999999876432 11222 2333321 1222333
Q ss_pred -----------ecCCCCHHHHHHHHHHHHh--CCCCEEEEc
Q 018253 133 -----------NTGSNSTREAIHATEQGFA--VGMHAALHI 160 (359)
Q Consensus 133 -----------gvg~~st~~ai~la~~a~~--~Gadav~v~ 160 (359)
.|+..+.+.....+++..+ .|..-+.++
T Consensus 97 ~~~~~~~~~~~~V~~d~~~~g~~~~~~L~~~~~g~~~i~~l 137 (280)
T cd06303 97 VKAWLKHQPLLYVGFDHAAGARLLADYFIKRYPNHARYAML 137 (280)
T ss_pred ccccccCCCceEeCCCHHHHHHHHHHHHHHhcCCCcEEEEE
Confidence 2344555666777888877 777666555
No 427
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=74.94 E-value=13 Score=35.61 Aligned_cols=102 Identities=11% Similarity=0.033 Sum_probs=61.8
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEccCc-c-----CcCCCC---HHHHHHHHHHHHHhhCCCcEEEEecCCCC------H
Q 018253 75 RFDLEAYDDLVNMQIVNGAEGMIVGGTT-G-----EGQLMS---WDEHIMLIGHTVNCFGASVKVIGNTGSNS------T 139 (359)
Q Consensus 75 ~ID~~~l~~li~~li~~Gv~Gl~v~Gst-G-----E~~~LT---~~Er~~li~~~v~~~~grvpViagvg~~s------t 139 (359)
.++++..+++||+-.+.|...+++-..= + .+...+ ...-.+|++.+.+ ..|.|++=+-+.. .
T Consensus 28 g~~t~~~k~yIDfAa~~G~eYvlvD~GW~~~~~~~~~d~~~~~~~~dl~elv~Ya~~---KgVgi~lw~~~~~~~~~~~~ 104 (273)
T PF10566_consen 28 GATTETQKRYIDFAAEMGIEYVLVDAGWYGWEKDDDFDFTKPIPDFDLPELVDYAKE---KGVGIWLWYHSETGGNVANL 104 (273)
T ss_dssp SSSHHHHHHHHHHHHHTT-SEEEEBTTCCGS--TTT--TT-B-TT--HHHHHHHHHH---TT-EEEEEEECCHTTBHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEeccccccccccccccccccCCccCHHHHHHHHHH---cCCCEEEEEeCCcchhhHhH
Confidence 5899999999999999999999993321 1 111111 2233344444333 3566655333332 2
Q ss_pred HH-HHHHHHHHHhCCCCEEEEcCCCCCCCCHHHHHHHHHHHHhc
Q 018253 140 RE-AIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSM 182 (359)
Q Consensus 140 ~~-ai~la~~a~~~Gadav~v~pP~y~~~s~~~l~~yf~~Ia~a 182 (359)
+. .-+.....++.|+.+|=+= |+..+.++.++||++|++.
T Consensus 105 ~~~~~~~f~~~~~~Gv~GvKid---F~~~d~Q~~v~~y~~i~~~ 145 (273)
T PF10566_consen 105 EKQLDEAFKLYAKWGVKGVKID---FMDRDDQEMVNWYEDILED 145 (273)
T ss_dssp HCCHHHHHHHHHHCTEEEEEEE-----SSTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCEEeeC---cCCCCCHHHHHHHHHHHHH
Confidence 22 3556677789999999986 4444557789999999874
No 428
>cd00717 URO-D Uroporphyrinogen decarboxylase (URO-D) is a dimeric cytosolic enzyme that decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, without requiring any prosthetic groups or cofactors. This reaction is located at the branching point of the tetrapyrrole biosynthetic pathway, leading to the biosynthesis of heme, chlorophyll or bacteriochlorophyll. URO-D deficiency is responsible for the human genetic diseases familial porphyria cutanea tarda (fPCT) and hepatoerythropoietic porphyria (HEP).
Probab=74.88 E-value=16 Score=35.53 Aligned_cols=73 Identities=14% Similarity=0.024 Sum_probs=48.0
Q ss_pred HHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHH----HHHHhhCC---CcEEEEecCCCCHHHHHHHHHHHHhCC
Q 018253 81 YDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIG----HTVNCFGA---SVKVIGNTGSNSTREAIHATEQGFAVG 153 (359)
Q Consensus 81 l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~----~~v~~~~g---rvpViagvg~~st~~ai~la~~a~~~G 153 (359)
+.++++.++++|++++.+.-+++. .||.++..+.+. .+++.+.. .++++-.++. +. .+.....+.|
T Consensus 179 ~~~~~~~~ieaGad~i~i~d~~~~--~lsp~~f~ef~~P~~k~i~~~i~~~~~~~~ilh~cg~-~~----~~~~~~~~~~ 251 (335)
T cd00717 179 TIEYLKAQIEAGAQAVQIFDSWAG--ALSPEDFEEFVLPYLKRIIEEVKKRLPGVPVILFAKG-AG----GLLEDLAQLG 251 (335)
T ss_pred HHHHHHHHHHhCCCEEEEeCcccc--cCCHHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEcCC-CH----HHHHHHHhcC
Confidence 355566677899999988776654 799999887663 44444433 3566544442 22 5567777789
Q ss_pred CCEEEEc
Q 018253 154 MHAALHI 160 (359)
Q Consensus 154 adav~v~ 160 (359)
+|.+.+-
T Consensus 252 ~~~~s~d 258 (335)
T cd00717 252 ADVVGLD 258 (335)
T ss_pred CCEEEeC
Confidence 9886554
No 429
>cd07896 Adenylation_kDNA_ligase_like Adenylation domain of kDNA ligases and similar proteins. The mitochondrial DNA of parasitic protozoans is highly unusual. It is termed the kinetoplast DNA (kDNA) and consists of circular DNA molecules (maxicircles) and several thousand smaller circular molecules (minicircles). This group is composed of kDNA ligase, Chlorella virus DNA ligase, and similar proteins. kDNA ligase and Chlorella virus DNA ligase are the smallest known ATP-dependent ligases. They are involved in DNA replication or repair. ATP-dependent polynucleotide ligases catalyze phosphodiester bond formation using nicked nucleic acid substrates with the high energy nucleotide of ATP as a cofactor in a three step reaction mechanism. They have a highly modular architecture consisting of a unique arrangement of two or more discrete domains. The adenylation and the C-terminal oligonucleotide/oligosaccharide binding (OB)-fold domains comprise a catalytic core unit that is common to most me
Probab=74.84 E-value=12 Score=32.84 Aligned_cols=57 Identities=11% Similarity=0.146 Sum_probs=46.9
Q ss_pred CCCCHHHHHHHHHHHHHhh-CCCcEEEEecCCCCHHHHHHHHHHHHhCCCCEEEEcCC
Q 018253 106 QLMSWDEHIMLIGHTVNCF-GASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINP 162 (359)
Q Consensus 106 ~~LT~~Er~~li~~~v~~~-~grvpViagvg~~st~~ai~la~~a~~~Gadav~v~pP 162 (359)
..++..||+++++..+... .+.+.++-.+...+.++..++.+.+.+.|.+++|+=.|
T Consensus 100 ~~~p~~eR~~~L~~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~EGlv~K~~ 157 (174)
T cd07896 100 AKGPFEERLERLKNLLEKIPNPHIKIVPQIPVKSNEALDQYLDEVVAAGGEGLMLRRP 157 (174)
T ss_pred CCCCHHHHHHHHHHHHHhCCCCcEEEEeeeeeCCHHHHHHHHHHHHhcCCCeEEEecC
Confidence 5679999999999998765 34555555556668889999999999999999999876
No 430
>PRK11815 tRNA-dihydrouridine synthase A; Provisional
Probab=74.77 E-value=38 Score=33.30 Aligned_cols=85 Identities=8% Similarity=-0.033 Sum_probs=56.9
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEccCc----------cCcCCCCHHHHHHHHHHHHHhhCCCcEEEE----ecCC-CCH
Q 018253 75 RFDLEAYDDLVNMQIVNGAEGMIVGGTT----------GEGQLMSWDEHIMLIGHTVNCFGASVKVIG----NTGS-NST 139 (359)
Q Consensus 75 ~ID~~~l~~li~~li~~Gv~Gl~v~Gst----------GE~~~LT~~Er~~li~~~v~~~~grvpVia----gvg~-~st 139 (359)
--|.+.+.+-+..+.+.|.+||=++... |-...-..+.=.++++.+.+.+ .+||.+ |+.. .+.
T Consensus 73 g~~p~~~~~aA~~~~~~g~d~IdlN~gCP~~~v~~~~~Gs~L~~~p~~~~eiv~avr~~v--~~pVsvKiR~g~~~~~t~ 150 (333)
T PRK11815 73 GSDPADLAEAAKLAEDWGYDEINLNVGCPSDRVQNGRFGACLMAEPELVADCVKAMKDAV--SIPVTVKHRIGIDDQDSY 150 (333)
T ss_pred CCCHHHHHHHHHHHHhcCCCEEEEcCCCCHHHccCCCeeeHHhcCHHHHHHHHHHHHHHc--CCceEEEEEeeeCCCcCH
Confidence 3577889999998888999999777432 2111122333345555555544 356655 4433 345
Q ss_pred HHHHHHHHHHHhCCCCEEEEcC
Q 018253 140 REAIHATEQGFAVGMHAALHIN 161 (359)
Q Consensus 140 ~~ai~la~~a~~~Gadav~v~p 161 (359)
.+++++++.++++|+|++.+..
T Consensus 151 ~~~~~~~~~l~~aG~d~i~vh~ 172 (333)
T PRK11815 151 EFLCDFVDTVAEAGCDTFIVHA 172 (333)
T ss_pred HHHHHHHHHHHHhCCCEEEEcC
Confidence 7889999999999999998763
No 431
>PRK13404 dihydropyrimidinase; Provisional
Probab=74.68 E-value=24 Score=36.42 Aligned_cols=52 Identities=10% Similarity=0.022 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecC
Q 018253 80 AYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTG 135 (359)
Q Consensus 80 ~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg 135 (359)
.+++.++.+++.|+++|-+..+.+. ..++.+|-.++++.+.+ -+.+|.++.-
T Consensus 136 ~~~~~v~~l~~~G~~~iKi~~~~~~-~~~~~~~l~~~~~~a~~---~g~~V~~Hae 187 (477)
T PRK13404 136 VLTEELPALIAQGYTSFKVFMTYDD-LKLDDRQILDVLAVARR---HGAMVMVHAE 187 (477)
T ss_pred hHHHHHHHHHHcCCCEEEEEecCCC-CCCCHHHHHHHHHHHHh---cCCEEEEEeC
Confidence 3445577788899999887744322 66888887777766543 2456666654
No 432
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=74.56 E-value=33 Score=27.83 Aligned_cols=68 Identities=10% Similarity=0.028 Sum_probs=33.7
Q ss_pred HHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCCCHHHHHHHHHHHHhCCCCEEE
Q 018253 82 DDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAAL 158 (359)
Q Consensus 82 ~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~st~~ai~la~~a~~~Gadav~ 158 (359)
+.+++...+...+-+.+..+.++ +.+.=.++++.+.+...++++|++|=...+... +.+++.|+|++.
T Consensus 40 ~~l~~~~~~~~pdvV~iS~~~~~----~~~~~~~~i~~l~~~~~~~~~i~vGG~~~~~~~-----~~~~~~G~D~~~ 107 (119)
T cd02067 40 EEIVEAAKEEDADAIGLSGLLTT----HMTLMKEVIEELKEAGLDDIPVLVGGAIVTRDF-----KFLKEIGVDAYF 107 (119)
T ss_pred HHHHHHHHHcCCCEEEEeccccc----cHHHHHHHHHHHHHcCCCCCeEEEECCCCChhH-----HHHHHcCCeEEE
Confidence 34455555666666665555444 234445555555544222566555433322211 355667776654
No 433
>TIGR02666 moaA molybdenum cofactor biosynthesis protein A, bacterial. The model for this family describes molybdenum cofactor biosynthesis protein A, or MoaA, as found in bacteria. It does not include the family of probable functional equivalent proteins from the archaea. MoaA works together with MoaC to synthesize precursor Z from guanine.
Probab=74.49 E-value=23 Score=34.41 Aligned_cols=107 Identities=14% Similarity=0.140 Sum_probs=67.6
Q ss_pred CCCCCCHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCc-EEEEecCCCCHHHHHHHHHHHH
Q 018253 72 PDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASV-KVIGNTGSNSTREAIHATEQGF 150 (359)
Q Consensus 72 ~dg~ID~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grv-pViagvg~~st~~ai~la~~a~ 150 (359)
....++.+.+.++++.+.+.|+..|.+.| ||-.. ..+-.++++.+.+. . .+ .+-+.+.+.-.. +.++...
T Consensus 39 ~~~~ls~eei~~~i~~~~~~gv~~V~ltG--GEPll--~~~l~~li~~i~~~-~-gi~~v~itTNG~ll~---~~~~~L~ 109 (334)
T TIGR02666 39 KEELLTFEEIERLVRAFVGLGVRKVRLTG--GEPLL--RKDLVELVARLAAL-P-GIEDIALTTNGLLLA---RHAKDLK 109 (334)
T ss_pred ccCCCCHHHHHHHHHHHHHCCCCEEEEEC--ccccc--cCCHHHHHHHHHhc-C-CCCeEEEEeCchhHH---HHHHHHH
Confidence 34568999999999999999999999877 89643 34555666654432 2 23 344444333233 3567778
Q ss_pred hCCCCEEEEcCCCC-----C-----CCCHHHHHHHHHHHHhc-CC-eEE
Q 018253 151 AVGMHAALHINPYY-----G-----KTSLEGLISHFDSVLSM-GP-TII 187 (359)
Q Consensus 151 ~~Gadav~v~pP~y-----~-----~~s~~~l~~yf~~Ia~a-~P-iii 187 (359)
++|.+.+.+..-.. . ..+-+.+.+..+.+.+. .+ +-+
T Consensus 110 ~~gl~~v~ISld~~~~~~~~~i~~~~~~~~~vl~~i~~l~~~G~~~v~i 158 (334)
T TIGR02666 110 EAGLKRVNVSLDSLDPERFAKITRRGGRLEQVLAGIDAALAAGLEPVKL 158 (334)
T ss_pred HcCCCeEEEecccCCHHHhheeCCCCCCHHHHHHHHHHHHHcCCCcEEE
Confidence 88999887664322 1 12446666666666665 44 554
No 434
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=74.48 E-value=12 Score=38.88 Aligned_cols=67 Identities=13% Similarity=0.170 Sum_probs=46.4
Q ss_pred HHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCCCHHHHHHHHHHHHhCCCCEEEE
Q 018253 82 DDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALH 159 (359)
Q Consensus 82 ~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~st~~ai~la~~a~~~Gadav~v 159 (359)
...++.|+++|++-|.+..+.|.. .. ..+.++...+... .++|++|... + .+.++.+.++|||++.+
T Consensus 243 ~~~~~~l~~ag~d~i~id~a~G~s----~~-~~~~i~~ik~~~~-~~~v~aG~V~-t----~~~a~~~~~aGad~I~v 309 (495)
T PTZ00314 243 IERAAALIEAGVDVLVVDSSQGNS----IY-QIDMIKKLKSNYP-HVDIIAGNVV-T----ADQAKNLIDAGADGLRI 309 (495)
T ss_pred HHHHHHHHHCCCCEEEEecCCCCc----hH-HHHHHHHHHhhCC-CceEEECCcC-C----HHHHHHHHHcCCCEEEE
Confidence 566777999999999988765542 11 2456777666654 5889986443 2 34455667799999976
No 435
>PRK12738 kbaY tagatose-bisphosphate aldolase; Reviewed
Probab=74.44 E-value=41 Score=32.52 Aligned_cols=124 Identities=12% Similarity=0.185 Sum_probs=0.0
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCC-CcEE---EEecCCCCHH-----------
Q 018253 76 FDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGA-SVKV---IGNTGSNSTR----------- 140 (359)
Q Consensus 76 ID~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~g-rvpV---iagvg~~st~----------- 140 (359)
+|...-...+.+.++.|...+.+=|| .|+.+|=.++.+.+++.+.. .+.| +..+++..-.
T Consensus 81 LDHg~~~e~i~~ai~~GFtSVM~DgS-----~lp~eeNi~~T~evv~~Ah~~gv~VEaElG~igg~ed~~~~~~~~~~~T 155 (286)
T PRK12738 81 LDHHESLDDIRRKVHAGVRSAMIDGS-----HFPFAENVKLVKSVVDFCHSQDCSVEAELGRLGGVEDDMSVDAESAFLT 155 (286)
T ss_pred CCCCCCHHHHHHHHHcCCCeEeecCC-----CCCHHHHHHHHHHHHHHHHHcCCeEEEEEEeeCCccCCcccccchhcCC
Q ss_pred HHHHHHHHHHhCCCCEEEEcCCCC---CCCCHHHHHHHHHHHHhc--CCeEEEeCCCCCCCCCCHHHHHHHhcC
Q 018253 141 EAIHATEQGFAVGMHAALHINPYY---GKTSLEGLISHFDSVLSM--GPTIIYNVPSRTGQDIPPRVIHTMAQS 209 (359)
Q Consensus 141 ~ai~la~~a~~~Gadav~v~pP~y---~~~s~~~l~~yf~~Ia~a--~PiiiYn~P~~tg~~ls~e~l~~La~~ 209 (359)
+--+..+.+++.|+|++.+.--.- ++..++=-++-.++|.+. .|++++ -|..++.+.+.+..+.
T Consensus 156 ~peea~~Fv~~TgvD~LAvaiGt~HG~Y~~~p~Ldfd~l~~I~~~~~vPLVLH-----GgSG~~~e~~~kai~~ 224 (286)
T PRK12738 156 DPQEAKRFVELTGVDSLAVAIGTAHGLYSKTPKIDFQRLAEIREVVDVPLVLH-----GASDVPDEFVRRTIEL 224 (286)
T ss_pred CHHHHHHHHHHhCCCEEEeccCcccCCCCCCCcCCHHHHHHHHHHhCCCEEEe-----CCCCCCHHHHHHHHHc
No 436
>PRK06801 hypothetical protein; Provisional
Probab=74.44 E-value=46 Score=32.13 Aligned_cols=122 Identities=12% Similarity=0.095 Sum_probs=0.0
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhh---------------CCCcEEEEecCCCCHH
Q 018253 76 FDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCF---------------GASVKVIGNTGSNSTR 140 (359)
Q Consensus 76 ID~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~---------------~grvpViagvg~~st~ 140 (359)
+|.......++..++.|++.+.+=||. |+.+|-.+..+.+++.+ +...++..+-...+..
T Consensus 81 lDH~~~~e~i~~Ai~~GftSVm~D~S~-----l~~eeNi~~t~~v~~~a~~~gv~VE~ElG~vgg~e~~v~~~~~~~~~~ 155 (286)
T PRK06801 81 LDHGLHFEAVVRALRLGFSSVMFDGST-----LEYEENVRQTREVVKMCHAVGVSVEAELGAVGGDEGGALYGEADSAKF 155 (286)
T ss_pred CCCCCCHHHHHHHHHhCCcEEEEcCCC-----CCHHHHHHHHHHHHHHHHHcCCeEEeecCcccCCCCCcccCCcccccC
Q ss_pred HHHHHHHHHH-hCCCCEEEE-------cCCCCCCCCHHHHHHHHHHHHhcCCeEEEeCCCCCCCCCCHHHHHHHhcC
Q 018253 141 EAIHATEQGF-AVGMHAALH-------INPYYGKTSLEGLISHFDSVLSMGPTIIYNVPSRTGQDIPPRVIHTMAQS 209 (359)
Q Consensus 141 ~ai~la~~a~-~~Gadav~v-------~pP~y~~~s~~~l~~yf~~Ia~a~PiiiYn~P~~tg~~ls~e~l~~La~~ 209 (359)
...+.++... +.|+|.+.+ ..+.-.+.+.+.+.+--+.+ ..|+++. -|..++.+.+.++.+.
T Consensus 156 T~pe~a~~f~~~tgvD~LAvaiGt~Hg~y~~~~~l~~e~l~~i~~~~--~~PLVlH-----GGSgi~~e~~~~~i~~ 225 (286)
T PRK06801 156 TDPQLARDFVDRTGIDALAVAIGNAHGKYKGEPKLDFARLAAIHQQT--GLPLVLH-----GGSGISDADFRRAIEL 225 (286)
T ss_pred CCHHHHHHHHHHHCcCEEEeccCCCCCCCCCCCCCCHHHHHHHHHhc--CCCEEEE-----CCCCCCHHHHHHHHHc
No 437
>TIGR01463 mtaA_cmuA methyltransferase, MtaA/CmuA family. This subfamily is closely related to, yet is distinct from, uroporphyrinogen decarboxylase (EC 4.1.1.37). It includes two isozymes from Methanosarcina barkeri of methylcobalamin--coenzyme M methyltransferase. It also includes a chloromethane utilization protein, CmuA, which transfers the methyl group of chloromethane to a corrinoid protein.
Probab=74.34 E-value=88 Score=30.40 Aligned_cols=44 Identities=11% Similarity=0.056 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHhCCCCEEEEcCCCCC--CCCHHH----HHHHHHHHHhc
Q 018253 139 TREAIHATEQGFAVGMHAALHINPYYG--KTSLEG----LISHFDSVLSM 182 (359)
Q Consensus 139 t~~ai~la~~a~~~Gadav~v~pP~y~--~~s~~~----l~~yf~~Ia~a 182 (359)
++..+++++...++|+|++.+..|+-. -.|+++ +..|++++.+.
T Consensus 179 ~~~~~~~~~~~~~~Gad~I~i~dp~a~~~~lsp~~f~e~~~p~~k~i~~~ 228 (340)
T TIGR01463 179 LDFVIAYAKAMVEAGADVIAIADPFASSDLISPETYKEFGLPYQKRLFAY 228 (340)
T ss_pred HHHHHHHHHHHHHcCCCEEEecCCccCccccCHHHHHHHHHHHHHHHHHH
Confidence 666778888888889998888887643 235443 34555677654
No 438
>PRK08599 coproporphyrinogen III oxidase; Provisional
Probab=74.33 E-value=37 Score=33.69 Aligned_cols=87 Identities=8% Similarity=0.019 Sum_probs=42.2
Q ss_pred CCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhC--CCcEEEEecCCCCHHHHHHHHHHHHhCCCCEEEEcCCCCC----
Q 018253 92 GAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFG--ASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYYG---- 165 (359)
Q Consensus 92 Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~--grvpViagvg~~st~~ai~la~~a~~~Gadav~v~pP~y~---- 165 (359)
+++.+++.| |+...|+.++-.++++.+.+..+ +.+.+-+.+...+. .-+..+..+++|++.+.+-.-.+.
T Consensus 51 ~i~~i~~gG--Gtpt~l~~~~l~~ll~~i~~~~~~~~~~eit~e~~p~~l--~~e~l~~l~~~G~~rvsiGvqS~~~~~l 126 (377)
T PRK08599 51 KLKTIYIGG--GTPTALSAEQLERLLTAIHRNLPLSGLEEFTFEANPGDL--TKEKLQVLKDSGVNRISLGVQTFNDELL 126 (377)
T ss_pred ceeEEEeCC--CCcccCCHHHHHHHHHHHHHhCCCCCCCEEEEEeCCCCC--CHHHHHHHHHcCCCEEEEecccCCHHHH
Confidence 355555544 55556666666666666665432 11222222221111 234455555566666655544332
Q ss_pred -----CCCHHHHHHHHHHHHhc
Q 018253 166 -----KTSLEGLISHFDSVLSM 182 (359)
Q Consensus 166 -----~~s~~~l~~yf~~Ia~a 182 (359)
..+.+++.+-.+.+.+.
T Consensus 127 ~~l~r~~~~~~~~~~i~~l~~~ 148 (377)
T PRK08599 127 KKIGRTHNEEDVYEAIANAKKA 148 (377)
T ss_pred HHcCCCCCHHHHHHHHHHHHHc
Confidence 13445555555555444
No 439
>TIGR00521 coaBC_dfp phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, prokaryotic. This model represents a bifunctional enzyme that catalyzes the second and third steps (cysteine ligation, EC 6.3.2.5, and decarboxylation, EC 4.1.1.36) in the biosynthesis of coenzyme A (CoA) from pantothenate in bacteria. In early descriptions of this flavoprotein, a ts mutation in one region of the protein appeared to cause a defect in DNA metaobolism rather than an increased need for the pantothenate precursor beta-alanine. This protein was then called dfp, for DNA/pantothenate metabolism flavoprotein. The authors responsible for detecting phosphopantothenate--cysteine ligase activity suggest renaming this bifunctional protein coaBC for its role in CoA biosynthesis. This enzyme contains the FMN cofactor, but no FAD or pyruvoyl group. The amino-terminal region contains the phosphopantothenoylcysteine decarboxylase activity.
Probab=74.24 E-value=67 Score=32.42 Aligned_cols=145 Identities=16% Similarity=0.257 Sum_probs=85.9
Q ss_pred CCHHHHHHHHHHHHHCCC------CEEEEccCccCcCCCCHHHHHHHHHHHHHh---hCCCcEEEEecCCC---------
Q 018253 76 FDLEAYDDLVNMQIVNGA------EGMIVGGTTGEGQLMSWDEHIMLIGHTVNC---FGASVKVIGNTGSN--------- 137 (359)
Q Consensus 76 ID~~~l~~li~~li~~Gv------~Gl~v~GstGE~~~LT~~Er~~li~~~v~~---~~grvpViagvg~~--------- 137 (359)
.+-....++++.|.+.|+ .|++.||..|++..-+.+|-...+...... ..|+ .|++.-|..
T Consensus 126 ~~~p~~~~Nl~~L~~~G~~vv~P~~g~~ac~~~g~g~~~~~~~i~~~v~~~~~~~~~~~~~-~vlit~g~t~E~iD~VR~ 204 (390)
T TIGR00521 126 YNNPAVQENIKRLKDDGYIFIEPDSGLLACGDEGKGRLAEPETIVKAAEREFSPKEDLEGK-RVLITAGPTREPIDPVRF 204 (390)
T ss_pred cCCHHHHHHHHHHHHCCcEEECCCCcccccccccCCCCCCHHHHHHHHHHHHhhccccCCc-eEEEecCCccCCCCceee
Confidence 444678888888888884 577888999999988888765555554432 3444 344433322
Q ss_pred ----CH-HHHHHHHHHHHhCCCCEEEEcC------CCCCC----CCHHHH-HHHHHHHHhcCCeEEEeC------CC-C-
Q 018253 138 ----ST-REAIHATEQGFAVGMHAALHIN------PYYGK----TSLEGL-ISHFDSVLSMGPTIIYNV------PS-R- 193 (359)
Q Consensus 138 ----st-~~ai~la~~a~~~Gadav~v~p------P~y~~----~s~~~l-~~yf~~Ia~a~PiiiYn~------P~-~- 193 (359)
|. .-...+++.+...|++-+++.- |.+.. .+.+++ .+-++++.....+++.+- |. .
T Consensus 205 itN~SSG~~g~~~a~~~~~~Ga~V~~~~g~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~D~~i~~Aavsd~~~~~~~ 284 (390)
T TIGR00521 205 ISNLSSGKMGLALAEAAYKRGADVTLITGPVSLLTPPGVKSIKVSTAEEMLEAALNELAKDFDIFISAAAVADFKPKTVF 284 (390)
T ss_pred ecCCCcchHHHHHHHHHHHCCCEEEEeCCCCccCCCCCcEEEEeccHHHHHHHHHHhhcccCCEEEEccccccccccccc
Confidence 33 4678899999999998777652 32221 244555 333323322223333321 11 0
Q ss_pred ------CCC------CCCHHHHHHHhc-CC--CeEEEeccCch
Q 018253 194 ------TGQ------DIPPRVIHTMAQ-SP--NLAGVKECVGN 221 (359)
Q Consensus 194 ------tg~------~ls~e~l~~La~-~p--nivGiK~ss~d 221 (359)
.+. .-.|+.+.+|.+ .| -+||+|-++.+
T Consensus 285 ~~Ki~~~~~~~~l~L~~~pdil~~l~~~~~~~~lvgF~aEt~~ 327 (390)
T TIGR00521 285 EGKIKKQGEELSLKLVKNPDIIAEVRKIKKHQVIVGFKAETND 327 (390)
T ss_pred cccccccCCceeEEEEeCcHHHHHHHhhCCCcEEEEEEcCCCc
Confidence 011 124688888884 33 36999988765
No 440
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=74.19 E-value=32 Score=35.90 Aligned_cols=140 Identities=12% Similarity=0.128 Sum_probs=80.0
Q ss_pred HHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEe-cCCCCHHHHHHHHHHHHhCCCCEEEEcC
Q 018253 83 DLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGN-TGSNSTREAIHATEQGFAVGMHAALHIN 161 (359)
Q Consensus 83 ~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViag-vg~~st~~ai~la~~a~~~Gadav~v~p 161 (359)
.-++.|+++|+|-|++=.+.|. | ..-.+.++...+..+ .++||+| |.+ .+-++++.++|||++.+..
T Consensus 251 ~r~~~l~~ag~d~i~iD~~~g~----~-~~~~~~i~~ik~~~p-~~~vi~g~v~t------~e~a~~a~~aGaD~i~vg~ 318 (505)
T PLN02274 251 ERLEHLVKAGVDVVVLDSSQGD----S-IYQLEMIKYIKKTYP-ELDVIGGNVVT------MYQAQNLIQAGVDGLRVGM 318 (505)
T ss_pred HHHHHHHHcCCCEEEEeCCCCC----c-HHHHHHHHHHHHhCC-CCcEEEecCCC------HHHHHHHHHcCcCEEEECC
Confidence 4466788999999988776554 2 222345656555554 5788875 643 3446777789999997742
Q ss_pred -CCCCCC---------CHHHHHHHHHHHHhc--CCeEEEeCCCCCCCCCCHHHHHHHhc--CCCeEEEeccCchh---hH
Q 018253 162 -PYYGKT---------SLEGLISHFDSVLSM--GPTIIYNVPSRTGQDIPPRVIHTMAQ--SPNLAGVKECVGND---RV 224 (359)
Q Consensus 162 -P~y~~~---------s~~~l~~yf~~Ia~a--~PiiiYn~P~~tg~~ls~e~l~~La~--~pnivGiK~ss~d~---~l 224 (359)
|-+... .+...+..+.++++. .|||. ..|+.-+-+..+.|+- .--++|--....++ ..
T Consensus 319 g~G~~~~t~~~~~~g~~~~~~i~~~~~~~~~~~vpVIa-----dGGI~~~~di~kAla~GA~~V~vGs~~~~t~Esp~~~ 393 (505)
T PLN02274 319 GSGSICTTQEVCAVGRGQATAVYKVASIAAQHGVPVIA-----DGGISNSGHIVKALTLGASTVMMGSFLAGTTEAPGEY 393 (505)
T ss_pred CCCccccCccccccCCCcccHHHHHHHHHHhcCCeEEE-----eCCCCCHHHHHHHHHcCCCEEEEchhhcccccCCcce
Confidence 211111 122244446666665 57553 3577777777888872 33344433333321 11
Q ss_pred hhhhCCceEEEecCC
Q 018253 225 EHYTGNGIVVWSGND 239 (359)
Q Consensus 225 ~~~~~~~~~v~~G~d 239 (359)
...-+..+..|-|..
T Consensus 394 ~~~~g~~~k~yrgmg 408 (505)
T PLN02274 394 FYQDGVRVKKYRGMG 408 (505)
T ss_pred eeeCCeEEEEEeccc
Confidence 111245677777764
No 441
>PRK07315 fructose-bisphosphate aldolase; Provisional
Probab=74.09 E-value=45 Score=32.26 Aligned_cols=119 Identities=15% Similarity=0.130 Sum_probs=0.0
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhC--------------CCcEEEEecCC-CCHH
Q 018253 76 FDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFG--------------ASVKVIGNTGS-NSTR 140 (359)
Q Consensus 76 ID~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~--------------grvpViagvg~-~st~ 140 (359)
+|.. -...+...++.|++.+.+=|| .|+.+|..++.+.+++.+. |.---+.|.+. .+.+
T Consensus 84 LDH~-~~~~i~~ai~~GftSVm~d~S-----~l~~eEni~~t~~v~~~a~~~gv~vE~ElG~i~g~ed~~~g~s~~t~pe 157 (293)
T PRK07315 84 LDHG-HYEDALECIEVGYTSIMFDGS-----HLPVEENLKLAKEVVEKAHAKGISVEAEVGTIGGEEDGIIGKGELAPIE 157 (293)
T ss_pred CCCC-CHHHHHHHHHcCCCEEEEcCC-----CCCHHHHHHHHHHHHHHHHHcCCEEEEecCcccCcCccccCccCCCCHH
Q ss_pred HHHHHHHHHHhCCCCEEEEcC-CC---CCCCCHHHHHHHHHHHHhc---CCeEEEeCCCCCCCCCCHHHHHHHhcC
Q 018253 141 EAIHATEQGFAVGMHAALHIN-PY---YGKTSLEGLISHFDSVLSM---GPTIIYNVPSRTGQDIPPRVIHTMAQS 209 (359)
Q Consensus 141 ~ai~la~~a~~~Gadav~v~p-P~---y~~~s~~~l~~yf~~Ia~a---~PiiiYn~P~~tg~~ls~e~l~~La~~ 209 (359)
++.++. +.|+|.+-+.- |. |...+..-=++..++|.+. .|+++. -|..++.+.+.++.+.
T Consensus 158 ea~~f~----~tgvD~LAv~iG~vHG~y~t~~k~l~~e~L~~i~~~~~~iPlVlh-----GGSGi~~e~~~~~i~~ 224 (293)
T PRK07315 158 DAKAMV----ETGIDFLAAGIGNIHGPYPENWEGLDLDHLEKLTEAVPGFPIVLH-----GGSGIPDDQIQEAIKL 224 (293)
T ss_pred HHHHHH----HcCCCEEeeccccccccCCCCCCcCCHHHHHHHHHhccCCCEEEE-----CCCCCCHHHHHHHHHc
No 442
>PF02548 Pantoate_transf: Ketopantoate hydroxymethyltransferase; InterPro: IPR003700 The panB gene from Escherichia coli encodes the first enzyme of the pantothenate biosynthesis pathway, ketopantoate hydroxymethyltransferase (KPHMT) 2.1.2.11 from EC. Fungal ketopantoate hydroxymethyltransferase is essential for the biosynthesis of coenzyme A, while the pathway intermediate 4'-phosphopantetheine is required for penicillin production [].; GO: 0003864 3-methyl-2-oxobutanoate hydroxymethyltransferase activity, 0015940 pantothenate biosynthetic process; PDB: 3VAV_G 1M3U_A 3EZ4_J 1O68_C 1O66_A 1OY0_D.
Probab=74.06 E-value=29 Score=33.05 Aligned_cols=111 Identities=15% Similarity=0.129 Sum_probs=70.5
Q ss_pred ceEEeeecCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEccCccCc-------CCCCHHHHHHHHHHHHHhhCCCcEEEEe
Q 018253 61 RLITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEG-------QLMSWDEHIMLIGHTVNCFGASVKVIGN 133 (359)
Q Consensus 61 Gi~~al~TPF~~dg~ID~~~l~~li~~li~~Gv~Gl~v~GstGE~-------~~LT~~Er~~li~~~v~~~~grvpViag 133 (359)
|==-.++|.+| -.+.+++| ++|+|-++|+-|.|=. ...|.+|-..-.+.+.+.++ +.-|++.
T Consensus 15 g~ki~~lTaYD-------~~~A~~~d---~agvD~iLVGDSlgmv~~G~~sT~~vtld~mi~h~~aV~Rga~-~~~vv~D 83 (261)
T PF02548_consen 15 GEKIVMLTAYD-------YPSARIAD---EAGVDIILVGDSLGMVVLGYDSTLPVTLDEMIYHTKAVRRGAP-NAFVVAD 83 (261)
T ss_dssp T--EEEEE--S-------HHHHHHHH---HTT-SEEEE-TTHHHHTT--SSSTT--HHHHHHHHHHHHHH-T-SSEEEEE
T ss_pred CCcEEEEeccc-------HHHHHHHH---HcCCCEEEeCCcHHHheeCCCCCcCcCHHHHHHHHHHHHhcCC-CceEEec
Confidence 44445677775 24444444 6899999998776532 35688888888888777654 5567664
Q ss_pred c--CC--CCHHHHHHHHHHHHh-CCCCEEEEcCCCCCCCCHHHHHHHHHHHHhc-CCeEEEe
Q 018253 134 T--GS--NSTREAIHATEQGFA-VGMHAALHINPYYGKTSLEGLISHFDSVLSM-GPTIIYN 189 (359)
Q Consensus 134 v--g~--~st~~ai~la~~a~~-~Gadav~v~pP~y~~~s~~~l~~yf~~Ia~a-~PiiiYn 189 (359)
. ++ .|.+++++.|.+..+ .|||+|-+-- ..++.+..+.|.++ .||+=+=
T Consensus 84 mPf~sy~~s~e~av~nA~rl~ke~GadaVKlEG-------g~~~~~~i~~l~~~GIPV~gHi 138 (261)
T PF02548_consen 84 MPFGSYQASPEQAVRNAGRLMKEAGADAVKLEG-------GAEIAETIKALVDAGIPVMGHI 138 (261)
T ss_dssp --TTSSTSSHHHHHHHHHHHHHTTT-SEEEEEB-------SGGGHHHHHHHHHTT--EEEEE
T ss_pred CCcccccCCHHHHHHHHHHHHHhcCCCEEEecc-------chhHHHHHHHHHHCCCcEEEEe
Confidence 3 33 489999999999877 9999998863 23567788889888 7998653
No 443
>TIGR00259 thylakoid_BtpA membrane complex biogenesis protein, BtpA family. Members of this family are found in C. elegans, Synechocystis sp., E. coli, and several of the Archaea. Members in Cyanobacteria have been shown to play a role in protein complex biogenesis, and designated BtpA (biogenesis of thylakoid protein). Homologs in non-photosynthetic species, where thylakoid intracytoplasmic membranes are lacking, are likely to act elsewhere in membrane protein biogenesis.
Probab=74.04 E-value=48 Score=31.57 Aligned_cols=88 Identities=11% Similarity=0.138 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHCC-CCEEEEcc-CccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCCCHHHHHHHHHHHHhCCCCEE
Q 018253 80 AYDDLVNMQIVNG-AEGMIVGG-TTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAA 157 (359)
Q Consensus 80 ~l~~li~~li~~G-v~Gl~v~G-stGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~st~~ai~la~~a~~~Gadav 157 (359)
.+...++..+..| +||+++.| +||+-+..+ +-. .+.+. .+.+||++|-| .+.+..-++.++ +|++
T Consensus 158 ~~~e~a~~~~~~~~aDavivtG~~TG~~~d~~--~l~----~vr~~-~~~~PvllggG-vt~eNv~e~l~~-----adGv 224 (257)
T TIGR00259 158 DLESIALDTVERGLADAVILSGKTTGTEVDLE--LLK----LAKET-VKDTPVLAGSG-VNLENVEELLSI-----ADGV 224 (257)
T ss_pred CHHHHHHHHHHhcCCCEEEECcCCCCCCCCHH--HHH----HHHhc-cCCCeEEEECC-CCHHHHHHHHhh-----CCEE
Confidence 3455555666666 99999998 577654433 222 22232 34679999876 355555555553 8888
Q ss_pred EEcCCC-----CC-CCCHHHHHHHHHHHH
Q 018253 158 LHINPY-----YG-KTSLEGLISHFDSVL 180 (359)
Q Consensus 158 ~v~pP~-----y~-~~s~~~l~~yf~~Ia 180 (359)
.+..=+ +. +-+.+-+.+|.+.+-
T Consensus 225 iVgS~~K~~G~~~n~~D~~rV~~Fm~~v~ 253 (257)
T TIGR00259 225 IVATTIKKDGVFNNFVDQARVSQFVEKVA 253 (257)
T ss_pred EECCCcccCCccCCCcCHHHHHHHHHHHH
Confidence 886532 11 245666777776653
No 444
>cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa. Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings.
Probab=73.99 E-value=20 Score=34.49 Aligned_cols=62 Identities=11% Similarity=0.078 Sum_probs=43.3
Q ss_pred HHHHHHHHhhCCCcEEE-EecCCC-CHHHHHHHHHHHHhCCCCEEEEcCCCCCCCCHHHHHHHHHHHHhc
Q 018253 115 MLIGHTVNCFGASVKVI-GNTGSN-STREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSM 182 (359)
Q Consensus 115 ~li~~~v~~~~grvpVi-agvg~~-st~~ai~la~~a~~~Gadav~v~pP~y~~~s~~~l~~yf~~Ia~a 182 (359)
++++.+++.. ++||+ +..|.- +.+++.+ +.+.|||++++..=.+...++....+.|.+....
T Consensus 184 elLk~l~~~~--~iPVV~iAeGGI~Tpena~~----v~e~GAdgVaVGSAI~~a~dP~~~tk~f~~ai~~ 247 (283)
T cd04727 184 ELVKETAKLG--RLPVVNFAAGGVATPADAAL----MMQLGADGVFVGSGIFKSENPEKRARAIVEAVTH 247 (283)
T ss_pred HHHHHHHHhc--CCCeEEEEeCCCCCHHHHHH----HHHcCCCEEEEcHHhhcCCCHHHHHHHHHHHHHh
Confidence 5667777654 58998 567776 4444333 3358999999998777667777777777766554
No 445
>cd06319 PBP1_ABC_sugar_binding_like_10 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=73.99 E-value=71 Score=29.12 Aligned_cols=26 Identities=19% Similarity=0.273 Sum_probs=20.7
Q ss_pred CHHHHHHHHHHHHHCCCCEEEEccCc
Q 018253 77 DLEAYDDLVNMQIVNGAEGMIVGGTT 102 (359)
Q Consensus 77 D~~~l~~li~~li~~Gv~Gl~v~Gst 102 (359)
|.+...+.++.+++.+++|+++.+..
T Consensus 40 ~~~~~~~~i~~~~~~~~dgiii~~~~ 65 (277)
T cd06319 40 SAKKELENLRTAIDKGVSGIIISPTN 65 (277)
T ss_pred CHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence 55666788888889999999987654
No 446
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=73.98 E-value=64 Score=28.60 Aligned_cols=165 Identities=13% Similarity=0.084 Sum_probs=91.6
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCCCHHHHHHHHHHHHhCCC
Q 018253 75 RFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGM 154 (359)
Q Consensus 75 ~ID~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~st~~ai~la~~a~~~Ga 154 (359)
-.|.+...++++.+.+. ++.+=+ |.+. ....=.+.++...+.. .++|++++.--.+... ..++.+.++|+
T Consensus 9 ~~~~~~~~~~~~~l~~~-i~~iei-g~~~-----~~~~g~~~i~~i~~~~-~~~~i~~~~~v~~~~~--~~~~~~~~aGa 78 (202)
T cd04726 9 LLDLEEALELAKKVPDG-VDIIEA-GTPL-----IKSEGMEAVRALREAF-PDKIIVADLKTADAGA--LEAEMAFKAGA 78 (202)
T ss_pred CCCHHHHHHHHHHhhhc-CCEEEc-CCHH-----HHHhCHHHHHHHHHHC-CCCEEEEEEEeccccH--HHHHHHHhcCC
Confidence 46788999999999888 888665 3332 1122256666666653 3678888754444432 34688899999
Q ss_pred CEEEEcCCCCCCCCHHHHHHHHHHHHhc-CCeEE--EeCCCCCCCCCCHHHHHHHhc-CCCeEEEec-----cC--ch--
Q 018253 155 HAALHINPYYGKTSLEGLISHFDSVLSM-GPTII--YNVPSRTGQDIPPRVIHTMAQ-SPNLAGVKE-----CV--GN-- 221 (359)
Q Consensus 155 dav~v~pP~y~~~s~~~l~~yf~~Ia~a-~Piii--Yn~P~~tg~~ls~e~l~~La~-~pnivGiK~-----ss--~d-- 221 (359)
|.+.+..-. +.+.+.+.++.+.+. +++++ -+ | .+++...+..+ -...+++-- +. ..
T Consensus 79 d~i~~h~~~----~~~~~~~~i~~~~~~g~~~~v~~~~-~------~t~~e~~~~~~~~~d~v~~~~~~~~~~~~~~~~~ 147 (202)
T cd04726 79 DIVTVLGAA----PLSTIKKAVKAAKKYGKEVQVDLIG-V------EDPEKRAKLLKLGVDIVILHRGIDAQAAGGWWPE 147 (202)
T ss_pred CEEEEEeeC----CHHHHHHHHHHHHHcCCeEEEEEeC-C------CCHHHHHHHHHCCCCEEEEcCcccccccCCCCCH
Confidence 988875321 223344444544443 45543 33 2 24444444433 344544410 00 11
Q ss_pred hhHhhhh---CCceEEEecCCchhhhhhhhcCCceeeccccc
Q 018253 222 DRVEHYT---GNGIVVWSGNDDQCHDARWNHGATGVISVTSN 260 (359)
Q Consensus 222 ~~l~~~~---~~~~~v~~G~d~~~~~~~l~~Ga~G~is~~an 260 (359)
..+.+.. +-.+.+-.|-...-...++..|++|++.|.+-
T Consensus 148 ~~i~~~~~~~~~~i~~~GGI~~~~i~~~~~~Gad~vvvGsai 189 (202)
T cd04726 148 DDLKKVKKLLGVKVAVAGGITPDTLPEFKKAGADIVIVGRAI 189 (202)
T ss_pred HHHHHHHhhcCCCEEEECCcCHHHHHHHHhcCCCEEEEeehh
Confidence 2233222 23344444554334445578899999988653
No 447
>TIGR01362 KDO8P_synth 3-deoxy-8-phosphooctulonate synthase. In Gram-negative bacteria, this is the first step in the biosynthesis of 3-deoxy-D-manno-octulosonate, part of the oligosaccharide core of lipopolysaccharide.
Probab=73.92 E-value=29 Score=32.99 Aligned_cols=82 Identities=12% Similarity=0.084 Sum_probs=59.1
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEc--cCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCC-------------CH
Q 018253 75 RFDLEAYDDLVNMQIVNGAEGMIVG--GTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSN-------------ST 139 (359)
Q Consensus 75 ~ID~~~l~~li~~li~~Gv~Gl~v~--GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~-------------st 139 (359)
....+.+..-++++.+.|.+.|+++ |+|-.+..++.+-|.-- .+.+ . ..|||+-.++. .-
T Consensus 126 ~~t~~e~l~aaeyi~~~Gn~~viLcERG~tf~y~r~~~D~~~ip--~~k~-~--~~PVi~DpSHsvq~pg~~g~~s~G~r 200 (258)
T TIGR01362 126 FLSPWDMKNVVEKVLSTGNKNILLCERGTSFGYNNLVVDMRSLP--IMRE-L--GCPVIFDATHSVQQPGGLGGASGGLR 200 (258)
T ss_pred cCCHHHHHHHHHHHHHcCCCcEEEEeCCCCcCCCCcccchhhhH--HHHh-c--CCCEEEeCCccccCCCCCCCCCCCcH
Confidence 3677888899999999999988876 55555556666665433 2223 2 48999976652 23
Q ss_pred HHHHHHHHHHHhCCCCEEEEcC
Q 018253 140 REAIHATEQGFAVGMHAALHIN 161 (359)
Q Consensus 140 ~~ai~la~~a~~~Gadav~v~p 161 (359)
+-.-.+++.|.++|||++++-.
T Consensus 201 ~~v~~la~AAvA~GaDGl~iEv 222 (258)
T TIGR01362 201 EFVPTLARAAVAVGIDGLFMET 222 (258)
T ss_pred HHHHHHHHHHHHhCCCEEEEEe
Confidence 4477889999999999998863
No 448
>cd07947 DRE_TIM_Re_CS Clostridium kluyveri Re-citrate synthase and related proteins, catalytic TIM barrel domain. Re-citrate synthase (Re-CS) is a Clostridium kluyveri enzyme that converts acetyl-CoA and oxaloacetate to citrate. In most organisms, this reaction is catalyzed by Si-citrate synthase which is Si-face stereospecific with respect to C-2 of oxaloacetate, and phylogenetically unrelated to Re-citrate synthase. Re-citrate synthase is also found in a few other strictly anaerobic organisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with
Probab=73.77 E-value=45 Score=31.99 Aligned_cols=71 Identities=8% Similarity=-0.071 Sum_probs=40.4
Q ss_pred HHHHHHCCCCEEEEccCccCcC-----CCCHHHHHHHHHHHHHhhC-CCcEEEEecCCCC-H-------HHHHHHHHHHH
Q 018253 85 VNMQIVNGAEGMIVGGTTGEGQ-----LMSWDEHIMLIGHTVNCFG-ASVKVIGNTGSNS-T-------REAIHATEQGF 150 (359)
Q Consensus 85 i~~li~~Gv~Gl~v~GstGE~~-----~LT~~Er~~li~~~v~~~~-grvpViagvg~~s-t-------~~ai~la~~a~ 150 (359)
++..+++|++.+-+..+++|.+ .+|.+|-.+.+..+++.+. ....|-+++...+ + +-+.++++.+.
T Consensus 80 ie~A~~~g~~~v~i~~s~S~~~~~~~~~~t~~e~l~~~~~~v~~a~~~g~~v~~~~ed~~r~d~~~~v~~~~~~~~~~~~ 159 (279)
T cd07947 80 LKLVKEMGLKETGILMSVSDYHIFKKLKMTREEAMEKYLEIVEEALDHGIKPRCHLEDITRADIYGFVLPFVNKLMKLSK 159 (279)
T ss_pred HHHHHHcCcCEEEEEEcCCHHHHHHHhCcCHHHHHHHHHHHHHHHHHCCCeEEEEEEcccCCCcccchHHHHHHHHHHHH
Confidence 4556677888888888888754 4566666666665665443 2244544442111 1 13444555555
Q ss_pred hCCCC
Q 018253 151 AVGMH 155 (359)
Q Consensus 151 ~~Gad 155 (359)
++|+|
T Consensus 160 ~~G~~ 164 (279)
T cd07947 160 ESGIP 164 (279)
T ss_pred HCCCC
Confidence 56776
No 449
>TIGR00284 dihydropteroate synthase-related protein. This protein has been found so far only in the Archaea, and in particular in those archaea that lack a bacterial-type dihydropteroate synthase. The central region of this protein shows considerable homology to the amino-terminal half of dihydropteroate synthases, while the carboxyl-terminal region shows homology to the small, uncharacterized protein slr0651 of Synechocystis PCC6803.
Probab=73.75 E-value=26 Score=36.60 Aligned_cols=105 Identities=11% Similarity=0.066 Sum_probs=67.0
Q ss_pred EeeecCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCC------
Q 018253 64 TAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSN------ 137 (359)
Q Consensus 64 ~al~TPF~~dg~ID~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~------ 137 (359)
+.++.|.+. .-+++.+.+.++.+.+.|++-|++=-.-| +..+..-+...-++...+.. + .|+++|+|..
T Consensus 253 ~vVlm~~~~--~~~~~~l~~~ie~a~~~Gi~~IIlDPglg-~~~~~l~~sL~~l~~~r~~~-~-~Pil~GvSNvtel~da 327 (499)
T TIGR00284 253 AFVVVPGNQ--PTNYEELAKAVKKLRTSGYSKVAADPSLS-PPLLGLLESIIRFRRASRLL-N-VPLVFGAANVTELVDA 327 (499)
T ss_pred eEEEEcCCC--CchHHHHHHHHHHHHHCCCCcEEEeCCCC-cchHHHHHHHHHHHHHHHhc-C-CcEEEeeccccCCCcc
Confidence 334445432 34569999999999999997666655555 33333344444444443444 3 8999999755
Q ss_pred -CHHHHHHHHHHHHhCCCCEEEEcCCCC-CCCCHHHHH
Q 018253 138 -STREAIHATEQGFAVGMHAALHINPYY-GKTSLEGLI 173 (359)
Q Consensus 138 -st~~ai~la~~a~~~Gadav~v~pP~y-~~~s~~~l~ 173 (359)
+..-+..++-.|.+.|++.+.+.-=.. .+.|-.+..
T Consensus 328 Ds~g~naal~~~a~e~Ga~ilrvhd~S~k~r~sV~E~~ 365 (499)
T TIGR00284 328 DSHGVNALLAAIALEAGASILYVVEDSYKSYRSTAEAA 365 (499)
T ss_pred chhHHHHHHHHHHHHcCCCEEEEcCCcccccccHHHHH
Confidence 444577788899999999888876333 233444433
No 450
>cd05015 SIS_PGI_1 Phosphoglucose isomerase (PGI) contains two SIS (Sugar ISomerase) domains. This classification is based on the alignment of the first SIS domain. PGI is a multifunctional enzyme which as an intracellular dimer catalyzes the reversible isomerization of glucose 6-phosphate to fructose 6-phosphate. As an extracellular protein, PGI also has functions equivalent to neuroleukin (NLK), autocrine motility factor (AMF), and maturation factor (MF). Evidence suggests that PGI, NLK, AMF, and MF are closely related or identical. NLK is a neurotrophic growth factor that promotes regeneration and survival of neurons. The dimeric form of NLK has isomerase function, whereas its monomeric form carries out neurotrophic activity. AMF is a cytokine that stimulates cell migration and metastasis. MF mediates the differentiation of human myeloid leukemic HL-60 cells to terminal monocytic cells.
Probab=73.52 E-value=15 Score=31.95 Aligned_cols=85 Identities=12% Similarity=0.064 Sum_probs=48.4
Q ss_pred CHHHHHHHHHHHHH-CCCCEEEEccCccCcC---CCCHHHH----------------HHHHHHHHHhhC-CCcEEEEecC
Q 018253 77 DLEAYDDLVNMQIV-NGAEGMIVGGTTGEGQ---LMSWDEH----------------IMLIGHTVNCFG-ASVKVIGNTG 135 (359)
Q Consensus 77 D~~~l~~li~~li~-~Gv~Gl~v~GstGE~~---~LT~~Er----------------~~li~~~v~~~~-grvpViagvg 135 (359)
+++.++++++.+.+ .+++-|++.|.-|-.. .+-+--. -+.+..+..... .+.-||+---
T Consensus 3 ~~~~i~~~~~~i~~~~~~~~iv~~GiGGS~lg~~~~~~~~~~~~~~~~~i~~~~~~D~~~~~~~~~~~~~~~tlvi~iSk 82 (158)
T cd05015 3 ELERIKEFAEKVRSGKKITDVVVIGIGGSDLGPRAVYEALKPYFKGGLRLHFVSNVDPDDLAELLKKLDPETTLFIVISK 82 (158)
T ss_pred HHHHHHHHHHHHhcCCCCCEEEEEecCccHHHHHHHHHHHHhhccCCceEEEEeCCCHHHHHHHHHhCCcccEEEEEEEC
Confidence 46778889998877 4899999999877333 0000000 011112222222 2322333333
Q ss_pred CCCHHHHHHHHHHHHh---------CCCCEEEEcC
Q 018253 136 SNSTREAIHATEQGFA---------VGMHAALHIN 161 (359)
Q Consensus 136 ~~st~~ai~la~~a~~---------~Gadav~v~p 161 (359)
+.+|.|++..++.+.+ .|++-+.++.
T Consensus 83 SG~T~Et~~~~~~a~~~l~~~~~~~~~~~~vaiT~ 117 (158)
T cd05015 83 SGTTLETLANARLAREWLEEAGGDDLAKHFVAITD 117 (158)
T ss_pred CcCCHHHHHHHHHHHHHHHHhccccccceEEEEcC
Confidence 4578888888888877 6776666654
No 451
>PRK09492 treR trehalose repressor; Provisional
Probab=73.40 E-value=82 Score=29.59 Aligned_cols=80 Identities=9% Similarity=-0.032 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCCCHHHHHHHHHHHHhCCCCEE
Q 018253 78 LEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAA 157 (359)
Q Consensus 78 ~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~st~~ai~la~~a~~~Gadav 157 (359)
+++....+++|++.|..-|.+.|+..+. .-+..+|.+-++.+.+..+ +++..-.+..+.+...+.++...+-+.+|+
T Consensus 160 ~~~~~~a~~~L~~~G~~~I~~i~~~~~~-~~~~~~R~~Gf~~al~~~g--~~~~~~~~~~~~~~~~~~~~~~l~~~~~ai 236 (315)
T PRK09492 160 EGAIKLLMQRLYDQGHRHISYLGVDHSD-VTTGKRRHQAYLAFCKQHK--LTPVAALGGLSMQSGYELVAKVLTPETTAL 236 (315)
T ss_pred HHHHHHHHHHHHHcCCCeEEEEcCCccc-chhHHHHHHHHHHHHHHcC--CCceeecCCCCchHHHHHHHHHhhcCCCEE
Confidence 5677788899999998877777543222 2244678777777776543 333223344455555555655544466777
Q ss_pred EEc
Q 018253 158 LHI 160 (359)
Q Consensus 158 ~v~ 160 (359)
+..
T Consensus 237 ~~~ 239 (315)
T PRK09492 237 VCA 239 (315)
T ss_pred EEc
Confidence 665
No 452
>cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE). This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis.
Probab=73.38 E-value=29 Score=30.89 Aligned_cols=67 Identities=9% Similarity=0.022 Sum_probs=38.6
Q ss_pred cCccCcCCCCHHHHHHHHHHHHHhh---CCCcEEEEecCCCCHHHHHHHHHHHHhCCCCEEEEcCCCCCCCCHHHHHH
Q 018253 100 GTTGEGQLMSWDEHIMLIGHTVNCF---GASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLIS 174 (359)
Q Consensus 100 GstGE~~~LT~~Er~~li~~~v~~~---~grvpViagvg~~st~~ai~la~~a~~~Gadav~v~pP~y~~~s~~~l~~ 174 (359)
|+||+ .+...-. +.++.+.+.. +.++|++++= +-+.+ .++.+.+.|+|++.+....+...+.+...+
T Consensus 139 g~tg~--~~~~~~~-~~i~~~~~~~~~~~~~~pi~v~G-GI~~e----nv~~~~~~gad~iivgsai~~~~~~~~~~~ 208 (211)
T cd00429 139 GFGGQ--KFIPEVL-EKIRKLRELIPENNLNLLIEVDG-GINLE----TIPLLAEAGADVLVAGSALFGSDDYAEAIK 208 (211)
T ss_pred CCCCc--ccCHHHH-HHHHHHHHHHHhcCCCeEEEEEC-CCCHH----HHHHHHHcCCCEEEECHHHhCCCCHHHHHH
Confidence 55665 3333322 2233333333 2357886532 34443 355667899999999988887777655444
No 453
>COG0646 MetH Methionine synthase I (cobalamin-dependent), methyltransferase domain [Amino acid transport and metabolism]
Probab=73.09 E-value=87 Score=30.52 Aligned_cols=114 Identities=15% Similarity=0.143 Sum_probs=70.1
Q ss_pred HHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHh---hCCCcEEEEecCC---------CCHHHHHHHH
Q 018253 79 EAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNC---FGASVKVIGNTGS---------NSTREAIHAT 146 (359)
Q Consensus 79 ~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~---~~grvpViagvg~---------~st~~ai~la 146 (359)
++++..++-|++.|+|++++ |- .....|-+..+..+.+. .+-++|||+..+- .++++ ..
T Consensus 143 ~ay~eq~~~Li~gG~D~iLi-----ET-~~D~l~~KaA~~a~~~~~~~~~~~LPv~~s~Ti~~sG~tl~Gq~~~a---~~ 213 (311)
T COG0646 143 EAYREQVEGLIDGGADLILI-----ET-IFDTLNAKAAVFAAREVFEELGVRLPVMISGTITDSGRTLSGQTIEA---FL 213 (311)
T ss_pred HHHHHHHHHHHhCCCcEEEE-----eh-hccHHHHHHHHHHHHHHHHhcCCcccEEEEEEEecCceecCCCcHHH---HH
Confidence 45677888889999999886 32 23445555555555544 3457999986532 22333 33
Q ss_pred HHHHhCCCCEEEEcCCCCCCCCHHHHHHHHHHHHhc--CCeEEEeC---CCCC----CCCCCHHHHHH
Q 018253 147 EQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSM--GPTIIYNV---PSRT----GQDIPPRVIHT 205 (359)
Q Consensus 147 ~~a~~~Gadav~v~pP~y~~~s~~~l~~yf~~Ia~a--~PiiiYn~---P~~t----g~~ls~e~l~~ 205 (359)
...+.+|+|.+=+= =...++.+..|++.+++. ..|..|-+ |..- .++.+|+.++.
T Consensus 214 ~~l~~~~~~~vGlN----Ca~Gp~~m~~~l~~ls~~~~~~vs~~PNAGLP~~~g~~~~Y~~~p~~~a~ 277 (311)
T COG0646 214 NSLEHLGPDAVGLN----CALGPDEMRPHLRELSRIADAFVSVYPNAGLPNAFGERAVYDLTPEYMAE 277 (311)
T ss_pred HHhhccCCcEEeec----cccCHHHHHHHHHHHHhccCceEEEeCCCCCCcccCCccccCCCHHHHHH
Confidence 34455676655331 124568999999999985 46777765 3221 26777766554
No 454
>PRK15108 biotin synthase; Provisional
Probab=73.09 E-value=38 Score=33.43 Aligned_cols=76 Identities=9% Similarity=0.033 Sum_probs=36.6
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEccCccCcC-CCCHHHHHHHHHHHHHhhCCCcEEEEecCCCCHHHHHHHHHHHHhCCC
Q 018253 76 FDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQ-LMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGM 154 (359)
Q Consensus 76 ID~~~l~~li~~li~~Gv~Gl~v~GstGE~~-~LT~~Er~~li~~~v~~~~grvpViagvg~~st~~ai~la~~a~~~Ga 154 (359)
++.+.+.+.+....+.|++-+. .|++|+.. ..+.+.-.++++.+.+ . .+.+++..|..+ .+..+..+++|+
T Consensus 76 ls~eEI~~~a~~~~~~G~~~i~-i~~~g~~p~~~~~e~i~~~i~~ik~-~--~i~v~~s~G~ls----~e~l~~LkeAGl 147 (345)
T PRK15108 76 MEVEQVLESARKAKAAGSTRFC-MGAAWKNPHERDMPYLEQMVQGVKA-M--GLETCMTLGTLS----ESQAQRLANAGL 147 (345)
T ss_pred CCHHHHHHHHHHHHHcCCCEEE-EEecCCCCCcchHHHHHHHHHHHHh-C--CCEEEEeCCcCC----HHHHHHHHHcCC
Confidence 5556666666666666666653 34444332 2333444444444432 1 244444444333 233333445666
Q ss_pred CEEEE
Q 018253 155 HAALH 159 (359)
Q Consensus 155 dav~v 159 (359)
|.+-+
T Consensus 148 d~~n~ 152 (345)
T PRK15108 148 DYYNH 152 (345)
T ss_pred CEEee
Confidence 65554
No 455
>PRK08649 inosine 5-monophosphate dehydrogenase; Validated
Probab=73.07 E-value=1e+02 Score=30.81 Aligned_cols=79 Identities=16% Similarity=0.064 Sum_probs=49.4
Q ss_pred CcEEEEecCCCCHHHHHHHHHHHHhCCCCEEEEcC----CCCC-CC-CHHHHHHHHHHHHhcCCeEEEeCCCCCCCCCCH
Q 018253 127 SVKVIGNTGSNSTREAIHATEQGFAVGMHAALHIN----PYYG-KT-SLEGLISHFDSVLSMGPTIIYNVPSRTGQDIPP 200 (359)
Q Consensus 127 rvpViagvg~~st~~ai~la~~a~~~Gadav~v~p----P~y~-~~-s~~~l~~yf~~Ia~a~PiiiYn~P~~tg~~ls~ 200 (359)
.++|.+.+ +..+..++++.+.++|+|.+.+.. ..|. .. +.+.+.++.+++ ..||+. |.-.++
T Consensus 131 ~V~v~vr~---~~~~~~e~a~~l~eaGvd~I~vhgrt~~~~h~~~~~~~~~i~~~ik~~--~ipVIa-------G~V~t~ 198 (368)
T PRK08649 131 GVIVAVSL---SPQRAQELAPTVVEAGVDLFVIQGTVVSAEHVSKEGEPLNLKEFIYEL--DVPVIV-------GGCVTY 198 (368)
T ss_pred eEEEEEec---CCcCHHHHHHHHHHCCCCEEEEeccchhhhccCCcCCHHHHHHHHHHC--CCCEEE-------eCCCCH
Confidence 35665555 345678999999999999999853 2332 22 455555555542 268765 345677
Q ss_pred HHHHHHhcCCCeEEEecc
Q 018253 201 RVIHTMAQSPNLAGVKEC 218 (359)
Q Consensus 201 e~l~~La~~pnivGiK~s 218 (359)
+...++.+ -.+-+||..
T Consensus 199 e~A~~l~~-aGAD~V~VG 215 (368)
T PRK08649 199 TTALHLMR-TGAAGVLVG 215 (368)
T ss_pred HHHHHHHH-cCCCEEEEC
Confidence 88887775 344444543
No 456
>PRK08508 biotin synthase; Provisional
Probab=73.07 E-value=28 Score=33.25 Aligned_cols=101 Identities=15% Similarity=0.116 Sum_probs=55.2
Q ss_pred CHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcE----EEEec-CCCCHHHHHHHHHHHHh
Q 018253 77 DLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVK----VIGNT-GSNSTREAIHATEQGFA 151 (359)
Q Consensus 77 D~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvp----Viagv-g~~st~~ai~la~~a~~ 151 (359)
+++-+.+.++.+.+.+. ++-+..+.|.. |.++-++|-+.-++.....+. ++-.+ .+.+.++.++..+.|++
T Consensus 73 ~~e~~~ei~~~ik~~~p-~l~i~~s~G~~---~~e~l~~Lk~aGld~~~~~lEt~~~~~~~i~~~~~~~~~l~~i~~a~~ 148 (279)
T PRK08508 73 KLEYVAEAAKAVKKEVP-GLHLIACNGTA---SVEQLKELKKAGIFSYNHNLETSKEFFPKICTTHTWEERFQTCENAKE 148 (279)
T ss_pred cHHHHHHHHHHHHhhCC-CcEEEecCCCC---CHHHHHHHHHcCCCEEcccccchHHHhcCCCCCCCHHHHHHHHHHHHH
Confidence 56666777766655543 23344455443 556555555554443332111 22222 24577888888888888
Q ss_pred CCCCEEEEcCCCCCCCCHHHHHHHHHHHHhc
Q 018253 152 VGMHAALHINPYYGKTSLEGLISHFDSVLSM 182 (359)
Q Consensus 152 ~Gadav~v~pP~y~~~s~~~l~~yf~~Ia~a 182 (359)
+|..--..+- +-..-+.++++++...+.+-
T Consensus 149 ~Gi~v~sg~I-~GlGEt~ed~~~~l~~lr~L 178 (279)
T PRK08508 149 AGLGLCSGGI-FGLGESWEDRISFLKSLASL 178 (279)
T ss_pred cCCeecceeE-EecCCCHHHHHHHHHHHHcC
Confidence 8852211111 11245778888888888753
No 457
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=73.05 E-value=86 Score=29.69 Aligned_cols=177 Identities=12% Similarity=0.057 Sum_probs=100.1
Q ss_pred HHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEec-CCCCHHHHHHHHHHHHhC-CCCEE
Q 018253 80 AYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNT-GSNSTREAIHATEQGFAV-GMHAA 157 (359)
Q Consensus 80 ~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagv-g~~st~~ai~la~~a~~~-Gadav 157 (359)
++.-+.+-+.++|++-+.+.=--=... ......+++.+ + ..++.++-++ |..+.+||+..++.|.++ |-|.+
T Consensus 21 s~~~~~~ai~aSg~~ivTva~rR~~~~---~~~~~~~~~~i-~--~~~~~~lpNTaG~~ta~eAv~~a~lare~~~~~~i 94 (248)
T cd04728 21 SPAIMKEAIEASGAEIVTVALRRVNIG---DPGGESFLDLL-D--KSGYTLLPNTAGCRTAEEAVRTARLAREALGTDWI 94 (248)
T ss_pred CHHHHHHHHHHhCCCEEEEEEEecccC---CCCcchHHhhc-c--ccCCEECCCCCCCCCHHHHHHHHHHHHHHhCCCeE
Confidence 344445555678888666542111100 01112233222 1 1356777765 566889999999999887 55665
Q ss_pred ---EEcCCCCCCCCHHHHHHHHHHHHhcC-CeEEEeCCCCCCCCCCHHHHHHHhcC-CCe-------EEEeccCchhh-H
Q 018253 158 ---LHINPYYGKTSLEGLISHFDSVLSMG-PTIIYNVPSRTGQDIPPRVIHTMAQS-PNL-------AGVKECVGNDR-V 224 (359)
Q Consensus 158 ---~v~pP~y~~~s~~~l~~yf~~Ia~a~-PiiiYn~P~~tg~~ls~e~l~~La~~-pni-------vGiK~ss~d~~-l 224 (359)
++..|+|..++..+.++--+.+.+.. -++-|-.+ ++.+.++|++. +.+ +|=.....++. +
T Consensus 95 KlEVi~d~~~Llpd~~~tv~aa~~L~~~Gf~vlpyc~d-------d~~~ar~l~~~G~~~vmPlg~pIGsg~Gi~~~~~I 167 (248)
T cd04728 95 KLEVIGDDKTLLPDPIETLKAAEILVKEGFTVLPYCTD-------DPVLAKRLEDAGCAAVMPLGSPIGSGQGLLNPYNL 167 (248)
T ss_pred EEEEecCccccccCHHHHHHHHHHHHHCCCEEEEEeCC-------CHHHHHHHHHcCCCEeCCCCcCCCCCCCCCCHHHH
Confidence 44448888888999999999998773 44446543 35666677643 222 33111111221 2
Q ss_pred hhhhC-CceEEEecC----CchhhhhhhhcCCceeeccccccc---HHHHHHHH
Q 018253 225 EHYTG-NGIVVWSGN----DDQCHDARWNHGATGVISVTSNLV---PGMMRELM 270 (359)
Q Consensus 225 ~~~~~-~~~~v~~G~----d~~~~~~~l~~Ga~G~is~~an~~---P~l~~~l~ 270 (359)
..... .++.|+.+. .+.... ++.+|++|++.+++-.- |..+.+-|
T Consensus 168 ~~I~e~~~vpVI~egGI~tpeda~~-AmelGAdgVlV~SAIt~a~dP~~ma~af 220 (248)
T cd04728 168 RIIIERADVPVIVDAGIGTPSDAAQ-AMELGADAVLLNTAIAKAKDPVAMARAF 220 (248)
T ss_pred HHHHHhCCCcEEEeCCCCCHHHHHH-HHHcCCCEEEEChHhcCCCCHHHHHHHH
Confidence 22211 345555532 233443 48899999998887765 66655433
No 458
>PRK09249 coproporphyrinogen III oxidase; Provisional
Probab=73.05 E-value=52 Score=33.67 Aligned_cols=99 Identities=12% Similarity=0.151 Sum_probs=64.7
Q ss_pred CCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhC--CCcEEEEecCCCCHHHHHHHHHHHHhCCCCEEEEcCCCCC----
Q 018253 92 GAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFG--ASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYYG---- 165 (359)
Q Consensus 92 Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~--grvpViagvg~~st~~ai~la~~a~~~Gadav~v~pP~y~---- 165 (359)
+++.|++.| |+...|+.++-.++++.+.+..+ ..+.+-+-+...+. +-+.++..+++|+..+.+-.-.+.
T Consensus 102 ~v~~i~~gG--GtPs~l~~~~l~~ll~~l~~~~~~~~~~e~tie~np~~l--t~e~l~~l~~aG~~risiGvqS~~~~~L 177 (453)
T PRK09249 102 PVSQLHWGG--GTPTFLSPEQLRRLMALLREHFNFAPDAEISIEIDPREL--DLEMLDALRELGFNRLSLGVQDFDPEVQ 177 (453)
T ss_pred ceEEEEECC--cccccCCHHHHHHHHHHHHHhCCCCCCCEEEEEecCCcC--CHHHHHHHHHcCCCEEEECCCCCCHHHH
Confidence 588888888 77788999999999999887642 22333333322222 345666667779998888765543
Q ss_pred -----CCCHHHHHHHHHHHHhc-C-Ce---EEEeCCCCC
Q 018253 166 -----KTSLEGLISHFDSVLSM-G-PT---IIYNVPSRT 194 (359)
Q Consensus 166 -----~~s~~~l~~yf~~Ia~a-~-Pi---iiYn~P~~t 194 (359)
..+.+++.+-.+.+.+. . .+ ++|..|..|
T Consensus 178 ~~l~r~~~~~~~~~ai~~l~~~G~~~v~~dli~GlPgqt 216 (453)
T PRK09249 178 KAVNRIQPFEFTFALVEAARELGFTSINIDLIYGLPKQT 216 (453)
T ss_pred HHhCCCCCHHHHHHHHHHHHHcCCCcEEEEEEccCCCCC
Confidence 24556666666666655 3 33 678888644
No 459
>TIGR03551 F420_cofH 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofH subunit. This enzyme, together with CofG, complete the biosynthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, the chromophore of coenzyme F420. The chromophore is also used in cyanobacteria DNA photolyases.
Probab=73.04 E-value=17 Score=35.67 Aligned_cols=110 Identities=14% Similarity=0.096 Sum_probs=61.5
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEcc-CccCc-------CCCCHHHHHHHHHHHHHhhCC-CcEEE-------EecCCCC
Q 018253 75 RFDLEAYDDLVNMQIVNGAEGMIVGG-TTGEG-------QLMSWDEHIMLIGHTVNCFGA-SVKVI-------GNTGSNS 138 (359)
Q Consensus 75 ~ID~~~l~~li~~li~~Gv~Gl~v~G-stGE~-------~~LT~~Er~~li~~~v~~~~g-rvpVi-------agvg~~s 138 (359)
..+.+.+.++++.+.+.+. ++-+.+ |..|. -.++.++-++|-++-++...+ ..... +..+..+
T Consensus 99 ~~~~~~~~~i~~~Ik~~~~-~i~~~~~t~~ei~~~~~~~g~~~~e~l~~LkeAGl~~i~~~~~E~~~~~v~~~i~~~~~~ 177 (343)
T TIGR03551 99 DLDGDFYLDILRAVKEEVP-GMHIHAFSPMEVYYGARNSGLSVEEALKRLKEAGLDSMPGTAAEILDDEVRKVICPDKLS 177 (343)
T ss_pred CCCHHHHHHHHHHHHHHCC-CceEEecCHHHHHHHHHHcCCCHHHHHHHHHHhCcccccCcchhhcCHHHHHhcCCCCCC
Confidence 3577888888888777642 122222 22231 234555556665544443321 11111 1222347
Q ss_pred HHHHHHHHHHHHhCCCCE---EEEcCCCCCCCCHHHHHHHHHHHHhc-------CCeEEEe
Q 018253 139 TREAIHATEQGFAVGMHA---ALHINPYYGKTSLEGLISHFDSVLSM-------GPTIIYN 189 (359)
Q Consensus 139 t~~ai~la~~a~~~Gada---v~v~pP~y~~~s~~~l~~yf~~Ia~a-------~PiiiYn 189 (359)
+++.++..+.|.++|... +|+-.| .+.+++.++...+.+- .+++.+|
T Consensus 178 ~~~~~~~i~~a~~~Gi~v~s~~i~G~~----Et~ed~~~~l~~lr~l~~~~~~~~~~iP~~ 234 (343)
T TIGR03551 178 TAEWIEIIKTAHKLGIPTTATIMYGHV----ETPEHWVDHLLILREIQEETGGFTEFVPLP 234 (343)
T ss_pred HHHHHHHHHHHHHcCCcccceEEEecC----CCHHHHHHHHHHHHHhhHHhCCeeEEEecc
Confidence 888899999999998653 233322 4678888888877653 2567777
No 460
>PF02126 PTE: Phosphotriesterase family; InterPro: IPR001559 Synonym(s): Paraoxonase, A-esterase, Aryltriphosphatase, Phosphotriesterase, Paraoxon hydrolase Bacteria such as Brevundimonas diminuta (Pseudomonas diminuta) harbour a plasmid that carries the gene for Aryldialkylphosphatase (3.1.8.1 from EC) (PTE) (also known as parathion hydrolase). This enzyme has attracted interest because of its potential use in the detoxification of chemical waste and warfare agents and its ability to degrade agricultural pesticides such as parathion. It acts specifically on synthetic organophosphate triesters and phosphorofluoridates. It does not seem to have a natural occuring substrate and may thus have optimally evolved for utilizing paraoxon. Aryldialkylphosphatase belongs to a family [, ] of enzymes that possess a binuclear zinc metal centre at their active site. The two zinc ions are coordinated by six different residues, six of which being histidines. This family so far includes, in addition to the parathion hydrolase, the following proteins: Escherichia coli protein Php, the substrate of which is not yet known. Mycobacterium tuberculosis phosphotriesterase homology protein Rv0230C. Mammalian phosphotriesterase related protein (PTER) (RPR-1). ; GO: 0008270 zinc ion binding, 0016788 hydrolase activity, acting on ester bonds, 0009056 catabolic process; PDB: 3MSR_A 3OVG_D 3K2G_C 1BF6_B 3OQE_A 3C86_A 3SO7_A 2D2G_A 2R1P_A 2D2H_A ....
Probab=73.01 E-value=6.7 Score=38.27 Aligned_cols=108 Identities=14% Similarity=0.122 Sum_probs=69.8
Q ss_pred CCCHHHHHHHHHHHHHCCCCE------EEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCCCHHHHHHHHHH
Q 018253 75 RFDLEAYDDLVNMQIVNGAEG------MIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQ 148 (359)
Q Consensus 75 ~ID~~~l~~li~~li~~Gv~G------l~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~st~~ai~la~~ 148 (359)
..+.+.+..++-.=+..|++| ++=.++++ ..+|..|++-+-.++..+..-.+||..+++. .++...+.++.
T Consensus 99 ~~s~e~la~~~i~Ei~~GidgT~ikaG~Ik~~~~~--~~it~~E~k~lrAaa~A~~~TG~pI~~H~~~-g~~~~~e~~~i 175 (308)
T PF02126_consen 99 EASVEELADLFIREIEEGIDGTGIKAGIIKEIGSS--NPITPLEEKVLRAAARAHKETGAPISTHTGR-GTRMGLEQLDI 175 (308)
T ss_dssp TSHHHHHHHHHHHHHHT-STTSSB-ESEEEEEEBT--TBCEHHHHHHHHHHHHHHHHHT-EEEEEEST-TGTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhcCCCCccchhheeEeecc--CCCCHHHHHHHHHHHHHHHHhCCeEEEcCCC-CCcCHHHHHHH
Confidence 345566666666666788884 66555444 7889999987777666666667999999975 55456666777
Q ss_pred HHhCCCC--EEEEcCCCCC-CCCHHHHHHHHHHHHhcCCeEEEeCC
Q 018253 149 GFAVGMH--AALHINPYYG-KTSLEGLISHFDSVLSMGPTIIYNVP 191 (359)
Q Consensus 149 a~~~Gad--av~v~pP~y~-~~s~~~l~~yf~~Ia~a~PiiiYn~P 191 (359)
.++.|+| .+++. ..- .++ ..|++++++..=.+=||..
T Consensus 176 l~e~Gv~~~rvvig--H~D~~~D----~~y~~~la~~G~~l~~D~~ 215 (308)
T PF02126_consen 176 LEEEGVDPSRVVIG--HMDRNPD----LDYHRELADRGVYLEFDTI 215 (308)
T ss_dssp HHHTT--GGGEEET--SGGGST-----HHHHHHHHHTT-EEEETTT
T ss_pred HHHcCCChhHeEEe--CCCCCCC----HHHHHHHHhcCCEEEecCC
Confidence 7788865 45554 111 122 5788999988767778765
No 461
>PRK13533 7-cyano-7-deazaguanine tRNA-ribosyltransferase; Provisional
Probab=72.84 E-value=28 Score=36.22 Aligned_cols=83 Identities=11% Similarity=0.030 Sum_probs=63.1
Q ss_pred CCCCCHHHHHHHHHHHHHCCCCEEEEccCc-cCcCCCCHHHHHHHHHHHHHhhCCCcEEE-EecCCCCHHHHHHHHHHHH
Q 018253 73 DGRFDLEAYDDLVNMQIVNGAEGMIVGGTT-GEGQLMSWDEHIMLIGHTVNCFGASVKVI-GNTGSNSTREAIHATEQGF 150 (359)
Q Consensus 73 dg~ID~~~l~~li~~li~~Gv~Gl~v~Gst-GE~~~LT~~Er~~li~~~v~~~~grvpVi-agvg~~st~~ai~la~~a~ 150 (359)
.|.++.+--++-++.+.+.|.+|+.++|.. || -....++..+++..+.+..+...|+. .|+|. ..+... +.
T Consensus 165 QGg~~~dLR~~sa~~l~~~~f~gyaIGgl~~~~-e~y~~~~~~~ii~~~~~~Lp~dkPryL~GvG~--P~~i~~----~V 237 (487)
T PRK13533 165 QGGTYPDLREESAREASKLGFDVYPIGAVVPLM-ERYRYDDLVDVVLAAKRGLGPGAPVHLFGAGH--PMMFAL----AV 237 (487)
T ss_pred cCCCCHHHHHHHHHHHHhCCCCEEEEcCccccc-ccCCHHHHHHHHHHHHhhCCCCCceEEeCCCC--HHHHHH----HH
Confidence 688999999999999999999999988844 44 33467888999999998888888865 68885 444443 44
Q ss_pred hCCCCEEEEcCC
Q 018253 151 AVGMHAALHINP 162 (359)
Q Consensus 151 ~~Gadav~v~pP 162 (359)
.+|+|-.=.+.|
T Consensus 238 ~lGvDlFD~v~p 249 (487)
T PRK13533 238 ALGCDLFDSAAY 249 (487)
T ss_pred HhCCCceeccHH
Confidence 588886644444
No 462
>COG0042 tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=72.61 E-value=17 Score=35.67 Aligned_cols=81 Identities=16% Similarity=0.165 Sum_probs=59.0
Q ss_pred HHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCCCHHHHHHHHHHHHhCCCCEEEEcCC
Q 018253 83 DLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINP 162 (359)
Q Consensus 83 ~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~st~~ai~la~~a~~~Gadav~v~pP 162 (359)
.+.+.+.+.|++.+.|=|-|=+..+.....+..+ ..+.+.++. +|||++=+=.+.+++.+..++ -|+|+||+--.
T Consensus 156 ~ia~~~~~~g~~~ltVHgRtr~~~y~~~ad~~~I-~~vk~~~~~-ipvi~NGdI~s~~~a~~~l~~---tg~DgVMigRg 230 (323)
T COG0042 156 EIARILEDAGADALTVHGRTRAQGYLGPADWDYI-KELKEAVPS-IPVIANGDIKSLEDAKEMLEY---TGADGVMIGRG 230 (323)
T ss_pred HHHHHHHhcCCCEEEEecccHHhcCCCccCHHHH-HHHHHhCCC-CeEEeCCCcCCHHHHHHHHHh---hCCCEEEEcHH
Confidence 4555566799999999998877777776555444 455666654 999986544577777766554 78999999988
Q ss_pred CCCCCC
Q 018253 163 YYGKTS 168 (359)
Q Consensus 163 ~y~~~s 168 (359)
.|..|.
T Consensus 231 a~~nP~ 236 (323)
T COG0042 231 ALGNPW 236 (323)
T ss_pred HccCCc
Confidence 887765
No 463
>PF02581 TMP-TENI: Thiamine monophosphate synthase/TENI; InterPro: IPR003733 Thiamine monophosphate synthase (TMP) (2.5.1.3 from EC) catalyzes the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl)thiazole phosphate to yield thiamine phosphate in the thiamine biosynthesis pathway []. TENI, a protein from Bacillus subtilis that regulates the production of several extracellular enzymes by reducing alkaline protease production belongs to this group [].; GO: 0004789 thiamine-phosphate diphosphorylase activity, 0009228 thiamine biosynthetic process; PDB: 3NL5_A 3NL2_A 3NM1_A 3NM3_C 3NL6_B 3NL3_A 3CEU_A 3O63_B 3QH2_C 1YAD_D ....
Probab=72.56 E-value=20 Score=31.67 Aligned_cols=94 Identities=18% Similarity=0.227 Sum_probs=54.0
Q ss_pred HHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCCCHHHHHHHHHHHHhCCCCEEEEcCCCCC--C
Q 018253 89 IVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYYG--K 166 (359)
Q Consensus 89 i~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~st~~ai~la~~a~~~Gadav~v~pP~y~--~ 166 (359)
.+.|++|+-+.+. .+...|.+++ .+.. .++|++..+.+| ++.|.+.|+|.+.+.|-|-. +
T Consensus 69 ~~~~~dGvHl~~~-----~~~~~~~r~~-------~~~~--~~ig~S~h~~~e----~~~a~~~g~dYv~~gpvf~T~sk 130 (180)
T PF02581_consen 69 LELGADGVHLGQS-----DLPPAEARKL-------LGPD--KIIGASCHSLEE----AREAEELGADYVFLGPVFPTSSK 130 (180)
T ss_dssp HHCT-SEEEEBTT-----SSSHHHHHHH-------HTTT--SEEEEEESSHHH----HHHHHHCTTSEEEEETSS--SSS
T ss_pred HhcCCCEEEeccc-----ccchHHhhhh-------cccc--eEEEeecCcHHH----HHHhhhcCCCEEEECCccCCCCC
Confidence 3567778776652 2334443333 2222 377888888888 56667899999998864432 2
Q ss_pred CCH--HHHHHHHHHHHhc--CCeEEEeCCCCCCCCCCHHHHHHHhc
Q 018253 167 TSL--EGLISHFDSVLSM--GPTIIYNVPSRTGQDIPPRVIHTMAQ 208 (359)
Q Consensus 167 ~s~--~~l~~yf~~Ia~a--~PiiiYn~P~~tg~~ls~e~l~~La~ 208 (359)
++. .+ .+.++.+.+. .|++.- - .|+++.+.++.+
T Consensus 131 ~~~~~~g-~~~l~~~~~~~~~pv~Al-----G--GI~~~~i~~l~~ 168 (180)
T PF02581_consen 131 PGAPPLG-LDGLREIARASPIPVYAL-----G--GITPENIPELRE 168 (180)
T ss_dssp SS-TTCH-HHHHHHHHHHTSSCEEEE-----S--S--TTTHHHHHH
T ss_pred ccccccC-HHHHHHHHHhCCCCEEEE-----c--CCCHHHHHHHHH
Confidence 321 22 4456777665 577655 2 356777777764
No 464
>TIGR02109 PQQ_syn_pqqE coenzyme PQQ biosynthesis protein E. This model describes coenzyme PQQ biosynthesis protein E, a gene required for the biosynthesis of pyrrolo-quinoline-quinone (coenzyme PQQ). PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases.
Probab=72.53 E-value=14 Score=36.21 Aligned_cols=80 Identities=11% Similarity=0.084 Sum_probs=53.0
Q ss_pred CCCCCHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCCCHHHHHHHHHHHHhC
Q 018253 73 DGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAV 152 (359)
Q Consensus 73 dg~ID~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~st~~ai~la~~a~~~ 152 (359)
..+++.+.+.++++.+.+.|+..|.+.| ||-. |- .+-.++++.+.+. ++.+.+ .++.+--+-+.++...+.
T Consensus 34 ~~~l~~e~~~~ii~~~~~~g~~~v~~~G--GEPl-l~-~~~~~ii~~~~~~---g~~~~l--~TNG~ll~~e~~~~L~~~ 104 (358)
T TIGR02109 34 KAELTTEEWTDVLTQAAELGVLQLHFSG--GEPL-AR-PDLVELVAHARRL---GLYTNL--ITSGVGLTEARLDALADA 104 (358)
T ss_pred cCCCCHHHHHHHHHHHHhcCCcEEEEeC--cccc-cc-ccHHHHHHHHHHc---CCeEEE--EeCCccCCHHHHHHHHhC
Confidence 3568999999999999899999888877 9976 33 3456667665542 233333 333333333455666678
Q ss_pred CCCEEEEcC
Q 018253 153 GMHAALHIN 161 (359)
Q Consensus 153 Gadav~v~p 161 (359)
|.+.+.+.-
T Consensus 105 g~~~v~iSl 113 (358)
T TIGR02109 105 GLDHVQLSF 113 (358)
T ss_pred CCCEEEEeC
Confidence 888887653
No 465
>PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed
Probab=72.44 E-value=20 Score=35.79 Aligned_cols=82 Identities=11% Similarity=0.126 Sum_probs=51.6
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEc--cCccCcCCCCHH-HHHHHHHHHHHhhCCCcEEEEecCCCCHH--HHHHHHHHHH
Q 018253 76 FDLEAYDDLVNMQIVNGAEGMIVG--GTTGEGQLMSWD-EHIMLIGHTVNCFGASVKVIGNTGSNSTR--EAIHATEQGF 150 (359)
Q Consensus 76 ID~~~l~~li~~li~~Gv~Gl~v~--GstGE~~~LT~~-Er~~li~~~v~~~~grvpViagvg~~st~--~ai~la~~a~ 150 (359)
-+.+.+..-++++.+.|.+.|+++ |++. +++.+.. --.+.+....+.. .+||++..++..-+ -...+++.|.
T Consensus 236 ~t~~e~~~Ave~i~~~Gn~~i~L~erg~s~-yp~~~~~~ldl~~i~~lk~~~--~~PV~~d~~Hs~G~r~~~~~~a~aAv 312 (360)
T PRK12595 236 ATIEEFIYAAEYIMSQGNGQIILCERGIRT-YEKATRNTLDISAVPILKQET--HLPVMVDVTHSTGRRDLLLPTAKAAL 312 (360)
T ss_pred CCHHHHHHHHHHHHHCCCCCEEEECCccCC-CCCCCCCCcCHHHHHHHHHHh--CCCEEEeCCCCCcchhhHHHHHHHHH
Confidence 578888888999888898777777 5443 2222111 1334444444433 47888866543222 2345888889
Q ss_pred hCCCCEEEEc
Q 018253 151 AVGMHAALHI 160 (359)
Q Consensus 151 ~~Gadav~v~ 160 (359)
++|||++++-
T Consensus 313 a~GAdg~~iE 322 (360)
T PRK12595 313 AIGADGVMAE 322 (360)
T ss_pred HcCCCeEEEE
Confidence 9999988875
No 466
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=72.41 E-value=13 Score=33.91 Aligned_cols=158 Identities=18% Similarity=0.127 Sum_probs=89.5
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCCCHHHHHHHHHHHHhCCCC
Q 018253 76 FDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMH 155 (359)
Q Consensus 76 ID~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~st~~ai~la~~a~~~Gad 155 (359)
.|.+....+++.|++.|+.-+=+.=+| ++-.++++...+..+ + +++|+|+--+ .+.++.|.++||+
T Consensus 17 ~~~~~a~~~~~al~~gGi~~iEiT~~t--------~~a~~~I~~l~~~~p-~--~~vGAGTV~~---~e~a~~a~~aGA~ 82 (196)
T PF01081_consen 17 DDPEDAVPIAEALIEGGIRAIEITLRT--------PNALEAIEALRKEFP-D--LLVGAGTVLT---AEQAEAAIAAGAQ 82 (196)
T ss_dssp SSGGGHHHHHHHHHHTT--EEEEETTS--------TTHHHHHHHHHHHHT-T--SEEEEES--S---HHHHHHHHHHT-S
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEecCC--------ccHHHHHHHHHHHCC-C--CeeEEEeccC---HHHHHHHHHcCCC
Confidence 456778999999999999987655444 345677777777765 3 6778876544 4567788889998
Q ss_pred EEEEcCCCCCCCCHHHHHHHHHHHHhcCCeEEEeCCCCCCCCCCHHHHHHHhcCCCeEEEeccCch-----hhHhhhhC-
Q 018253 156 AALHINPYYGKTSLEGLISHFDSVLSMGPTIIYNVPSRTGQDIPPRVIHTMAQSPNLAGVKECVGN-----DRVEHYTG- 229 (359)
Q Consensus 156 av~v~pP~y~~~s~~~l~~yf~~Ia~a~PiiiYn~P~~tg~~ls~e~l~~La~~pnivGiK~ss~d-----~~l~~~~~- 229 (359)
.++. |.+ .+++.++-++-- +|+ ..|. ++|..+.+-.+.. ..-+|.--.+ ..++.+.+
T Consensus 83 FivS--P~~----~~~v~~~~~~~~--i~~-------iPG~-~TptEi~~A~~~G-~~~vK~FPA~~~GG~~~ik~l~~p 145 (196)
T PF01081_consen 83 FIVS--PGF----DPEVIEYAREYG--IPY-------IPGV-MTPTEIMQALEAG-ADIVKLFPAGALGGPSYIKALRGP 145 (196)
T ss_dssp EEEE--SS------HHHHHHHHHHT--SEE-------EEEE-SSHHHHHHHHHTT--SEEEETTTTTTTHHHHHHHHHTT
T ss_pred EEEC--CCC----CHHHHHHHHHcC--Ccc-------cCCc-CCHHHHHHHHHCC-CCEEEEecchhcCcHHHHHHHhcc
Confidence 6554 554 477877766421 222 2343 6666555544432 2235653322 22333322
Q ss_pred -CceEEEe--cCCchhhhhhhhcCCceeecccccccHHH
Q 018253 230 -NGIVVWS--GNDDQCHDARWNHGATGVISVTSNLVPGM 265 (359)
Q Consensus 230 -~~~~v~~--G~d~~~~~~~l~~Ga~G~is~~an~~P~l 265 (359)
+++.++. |-+..-+..++.+|+.++..| ++++|+.
T Consensus 146 ~p~~~~~ptGGV~~~N~~~~l~ag~~~vg~G-s~L~~~~ 183 (196)
T PF01081_consen 146 FPDLPFMPTGGVNPDNLAEYLKAGAVAVGGG-SWLFPKD 183 (196)
T ss_dssp TTT-EEEEBSS--TTTHHHHHTSTTBSEEEE-SGGGSHH
T ss_pred CCCCeEEEcCCCCHHHHHHHHhCCCEEEEEC-chhcCHH
Confidence 3555543 555445566788998877654 5566654
No 467
>PRK08208 coproporphyrinogen III oxidase; Validated
Probab=72.36 E-value=52 Score=33.43 Aligned_cols=112 Identities=16% Similarity=0.167 Sum_probs=71.2
Q ss_pred HHHHHHHHHHHHC----CCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCC---CcEEEEecCCCCHHHHHHHHHHHHh
Q 018253 79 EAYDDLVNMQIVN----GAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGA---SVKVIGNTGSNSTREAIHATEQGFA 151 (359)
Q Consensus 79 ~~l~~li~~li~~----Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~g---rvpViagvg~~st~~ai~la~~a~~ 151 (359)
+++.+.++.+.+. .+.-++++| |+-..|+.++-.++++.+.+..+- .+.+-+-+...+. +-+..+..++
T Consensus 74 ~~L~~Ei~~~~~~~~~~~i~~i~~GG--GTPs~l~~~~l~~Ll~~i~~~~~~~~~~~eitiE~~P~~l--t~e~l~~l~~ 149 (430)
T PRK08208 74 DALIRQAEQVAEALAPARFASFAVGG--GTPTLLNAAELEKLFDSVERVLGVDLGNIPKSVETSPATT--TAEKLALLAA 149 (430)
T ss_pred HHHHHHHHHHHHHcCCCceeEEEEcC--CccccCCHHHHHHHHHHHHHhCCCCCCCceEEEEeCcCcC--CHHHHHHHHH
Confidence 4555555544432 366788766 568889999999999998876531 2233333322222 3366666677
Q ss_pred CCCCEEEEcCCCCC--------C-CCHHHHHHHHHHHHhc-CCe----EEEeCCCCC
Q 018253 152 VGMHAALHINPYYG--------K-TSLEGLISHFDSVLSM-GPT----IIYNVPSRT 194 (359)
Q Consensus 152 ~Gadav~v~pP~y~--------~-~s~~~l~~yf~~Ia~a-~Pi----iiYn~P~~t 194 (359)
+|++.+.+-.-.+. + .+.+++.+-++.+.+. .+. ++|..|.-|
T Consensus 150 ~G~~rvslGvQS~~~~~L~~l~R~~~~~~~~~ai~~l~~~g~~~i~~dlI~GlP~qt 206 (430)
T PRK08208 150 RGVNRLSIGVQSFHDSELHALHRPQKRADVHQALEWIRAAGFPILNIDLIYGIPGQT 206 (430)
T ss_pred cCCCEEEEecccCCHHHHHHhCCCCCHHHHHHHHHHHHHcCCCeEEEEeecCCCCCC
Confidence 89999988776552 2 4667777777777666 453 688888643
No 468
>cd03332 LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-binding domain. LMO is a FMN-containing enzyme that catalyzes the conversion of L-lactate and oxygen to acetate, carbon dioxide, and water. LMO is a member of the family of alpha-hydroxy acid oxidases. It is thought to be a homooctamer with two- and four- fold axes in the center of the octamer.
Probab=72.16 E-value=1.1e+02 Score=30.74 Aligned_cols=23 Identities=17% Similarity=0.186 Sum_probs=19.0
Q ss_pred CHHHHHHHHHHHHHCCCCEEEEc
Q 018253 77 DLEAYDDLVNMQIVNGAEGMIVG 99 (359)
Q Consensus 77 D~~~l~~li~~li~~Gv~Gl~v~ 99 (359)
|.+..++++++-.++|+++|++.
T Consensus 149 dr~~~~~ll~RA~~aG~~alvlT 171 (383)
T cd03332 149 DDDLTESLLRRAEKAGYRVLVVT 171 (383)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEe
Confidence 66788888888888888888874
No 469
>cd00502 DHQase_I Type I 3-dehydroquinase, (3-dehydroquinate dehydratase or DHQase.) Catalyzes the cis-dehydration of 3-dehydroquinate via a covalent imine intermediate to produce dehydroshikimate. Dehydroquinase is the third enzyme in the shikimate pathway, which is involved in the biosynthesis of aromatic amino acids. Type I DHQase exists as a homodimer. Type II 3-dehydroquinase also catalyzes the same overall reaction, but is unrelated in terms of sequence and structure, and utilizes a completely different reaction mechanism.
Probab=71.95 E-value=80 Score=28.88 Aligned_cols=106 Identities=19% Similarity=0.104 Sum_probs=58.2
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCC----CCHHHHHHHHHHHH
Q 018253 75 RFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGS----NSTREAIHATEQGF 150 (359)
Q Consensus 75 ~ID~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~----~st~~ai~la~~a~ 150 (359)
..+.+...++++..++.|++-+=+ |... +...++++... .++++||+..-. .+.++..+..++++
T Consensus 72 ~~~~~~~~~ll~~~~~~~~d~vDi-----El~~---~~~~~~~~~~~---~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~ 140 (225)
T cd00502 72 EGSEEEYLELLEEALKLGPDYVDI-----ELDS---ALLEELINSRK---KGNTKIIGSYHDFSGTPSDEELVSRLEKMA 140 (225)
T ss_pred CCCHHHHHHHHHHHHHHCCCEEEE-----Eecc---hHHHHHHHHHH---hCCCEEEEEeccCCCCcCHHHHHHHHHHHH
Confidence 456666777777777777666555 3222 22222222211 456777776532 24577778888888
Q ss_pred hCCCCEEEEcCCCCCCCCHHHHHHHHHHHHhc--CCeEEEeCC
Q 018253 151 AVGMHAALHINPYYGKTSLEGLISHFDSVLSM--GPTIIYNVP 191 (359)
Q Consensus 151 ~~Gadav~v~pP~y~~~s~~~l~~yf~~Ia~a--~PiiiYn~P 191 (359)
+.|+|-+=+........+--.+....+.+... .|++.|+.-
T Consensus 141 ~~gadivKla~~~~~~~D~~~ll~~~~~~~~~~~~p~i~~~MG 183 (225)
T cd00502 141 ALGADIVKIAVMANSIEDNLRLLKFTRQVKNLYDIPLIAINMG 183 (225)
T ss_pred HhCCCEEEEEecCCCHHHHHHHHHHHHHHHhcCCCCEEEEEcC
Confidence 88888775543333222223344444444332 488888753
No 470
>PRK15447 putative protease; Provisional
Probab=71.94 E-value=34 Score=33.11 Aligned_cols=74 Identities=8% Similarity=-0.017 Sum_probs=49.7
Q ss_pred HHHHHHHHHHCCCCEEEEccCccCcC----CCCHHHHHHHHHHHHHhhCCCcEEEEecCCC-CHHHHHHHHHHHHhCCCC
Q 018253 81 YDDLVNMQIVNGAEGMIVGGTTGEGQ----LMSWDEHIMLIGHTVNCFGASVKVIGNTGSN-STREAIHATEQGFAVGMH 155 (359)
Q Consensus 81 l~~li~~li~~Gv~Gl~v~GstGE~~----~LT~~Er~~li~~~v~~~~grvpViagvg~~-st~~ai~la~~a~~~Gad 155 (359)
++.+...+.+.|+|.|++++ +.+ .+|.+|-.+.++.+.+ .| .+|++.+-.. ..++-++..+...+.|.|
T Consensus 17 ~~~~~~~~~~~gaDaVY~g~---~~~~~R~~f~~~~l~e~v~~~~~--~g-kkvyva~p~i~~~~~e~~~l~~~l~~~~~ 90 (301)
T PRK15447 17 VRDFYQRAADSPVDIVYLGE---TVCSKRRELKVGDWLELAERLAA--AG-KEVVLSTLALVEAPSELKELRRLVENGEF 90 (301)
T ss_pred HHHHHHHHHcCCCCEEEECC---ccCCCccCCCHHHHHHHHHHHHH--cC-CEEEEEecccccCHHHHHHHHHHHhcCCC
Confidence 45666667788999999874 332 3899999999988764 33 4666655443 224444555556667888
Q ss_pred EEEEc
Q 018253 156 AALHI 160 (359)
Q Consensus 156 av~v~ 160 (359)
+|++.
T Consensus 91 ~v~v~ 95 (301)
T PRK15447 91 LVEAN 95 (301)
T ss_pred EEEEe
Confidence 88874
No 471
>cd03329 MR_like_4 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 4. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=71.93 E-value=46 Score=32.99 Aligned_cols=127 Identities=9% Similarity=0.031 Sum_probs=86.6
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEec-CCCCHHHHHHHHHHHHhCCC
Q 018253 76 FDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNT-GSNSTREAIHATEQGFAVGM 154 (359)
Q Consensus 76 ID~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagv-g~~st~~ai~la~~a~~~Ga 154 (359)
.+.+.+.+.++..++.|.+++=+-+..+. ..++-.+.++.+.+.++.++++.+-. ++-+.++++++++..++.+.
T Consensus 142 ~~~~~~~~~a~~~~~~Gf~~~Kik~~~~~----~~~~di~~i~~vR~~~G~~~~l~vDan~~~~~~~A~~~~~~l~~~~l 217 (368)
T cd03329 142 ESPEAYADFAEECKALGYRAIKLHPWGPG----VVRRDLKACLAVREAVGPDMRLMHDGAHWYSRADALRLGRALEELGF 217 (368)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEecCCch----hHHHHHHHHHHHHHHhCCCCeEEEECCCCcCHHHHHHHHHHhhhcCC
Confidence 47788889999999999999866432111 13556788888889898889998855 56789999999999998875
Q ss_pred CEEEEcCCCCCCCCHHHHHHHHHHHHhc--CCeEEEeCCCCCCCCCC-HHHHHHHhc--CCCeEEEeccC
Q 018253 155 HAALHINPYYGKTSLEGLISHFDSVLSM--GPTIIYNVPSRTGQDIP-PRVIHTMAQ--SPNLAGVKECV 219 (359)
Q Consensus 155 dav~v~pP~y~~~s~~~l~~yf~~Ia~a--~PiiiYn~P~~tg~~ls-~e~l~~La~--~pnivGiK~ss 219 (359)
. .+--|. ..+++ +-+++|.+. .||..=. .-.+ ++.+.++.+ .-.++-+|-+-
T Consensus 218 ~--~iEeP~----~~~d~-~~~~~l~~~~~ipIa~~E------~~~~~~~~~~~~i~~~a~d~v~~d~~~ 274 (368)
T cd03329 218 F--WYEDPL----REASI-SSYRWLAEKLDIPILGTE------HSRGALESRADWVLAGATDFLRADVNL 274 (368)
T ss_pred C--eEeCCC----CchhH-HHHHHHHhcCCCCEEccC------cccCcHHHHHHHHHhCCCCEEecCccc
Confidence 3 333343 23344 445567765 5765432 1244 677777753 45677777653
No 472
>PRK08005 epimerase; Validated
Probab=71.92 E-value=82 Score=28.98 Aligned_cols=164 Identities=12% Similarity=0.013 Sum_probs=91.8
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEccCccCc-CCCCH--HH--------------------HHHHHHHHHHhhCCCcEEE
Q 018253 75 RFDLEAYDDLVNMQIVNGAEGMIVGGTTGEG-QLMSW--DE--------------------HIMLIGHTVNCFGASVKVI 131 (359)
Q Consensus 75 ~ID~~~l~~li~~li~~Gv~Gl~v~GstGE~-~~LT~--~E--------------------r~~li~~~v~~~~grvpVi 131 (359)
+-|+..+.+.++.+.+.|++-+-+==.=|.| +.+|. +. =.+.++..+++ +.. -|.
T Consensus 9 ~ad~~~l~~el~~l~~~g~d~lHiDvMDG~FVPN~tfG~~~i~~l~~~t~~~~DvHLMv~~P~~~i~~~~~~-gad-~It 86 (210)
T PRK08005 9 SADPLRYAEALTALHDAPLGSLHLDIEDTSFINNITFGMKTIQAVAQQTRHPLSFHLMVSSPQRWLPWLAAI-RPG-WIF 86 (210)
T ss_pred hCCHHHHHHHHHHHHHCCCCEEEEeccCCCcCCccccCHHHHHHHHhcCCCCeEEEeccCCHHHHHHHHHHh-CCC-EEE
Confidence 4688999999999999998843332222222 22221 11 11233333332 112 345
Q ss_pred EecCCCCHHHHHHHHHHHHhCCCCEEEEcCCCCCCCCHHHHHHHHHHHHhcCCeEEEeCCCCCCCCCCHHHHHHHhcCCC
Q 018253 132 GNTGSNSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSMGPTIIYNVPSRTGQDIPPRVIHTMAQSPN 211 (359)
Q Consensus 132 agvg~~st~~ai~la~~a~~~Gadav~v~pP~y~~~s~~~l~~yf~~Ia~a~PiiiYn~P~~tg~~ls~e~l~~La~~pn 211 (359)
+++-+ +....+..+..++.|+.+-+++.|. |+-+.+++|-...+.+ +++=-.|+..|..+-++.+.|+.+.-.
T Consensus 87 ~H~Ea--~~~~~~~l~~Ik~~G~k~GlAlnP~----Tp~~~i~~~l~~vD~V-lvMsV~PGf~GQ~f~~~~~~KI~~l~~ 159 (210)
T PRK08005 87 IHAES--VQNPSEILADIRAIGAKAGLALNPA----TPLLPYRYLALQLDAL-MIMTSEPDGRGQQFIAAMCEKVSQSRE 159 (210)
T ss_pred EcccC--ccCHHHHHHHHHHcCCcEEEEECCC----CCHHHHHHHHHhcCEE-EEEEecCCCccceecHHHHHHHHHHHH
Confidence 55542 3445566677777888888888887 2333333443333332 223336888899999988888875321
Q ss_pred eEEEeccCchhhHhhhhCCceEEEecCCchhhhhhhhcCCceeecccccc
Q 018253 212 LAGVKECVGNDRVEHYTGNGIVVWSGNDDQCHDARWNHGATGVISVTSNL 261 (359)
Q Consensus 212 ivGiK~ss~d~~l~~~~~~~~~v~~G~d~~~~~~~l~~Ga~G~is~~an~ 261 (359)
.. + ...+.|=.|-..........+|++.+++|.+-|
T Consensus 160 ~~--~------------~~~I~VDGGI~~~~i~~l~~aGad~~V~GsaiF 195 (210)
T PRK08005 160 HF--P------------AAECWADGGITLRAARLLAAAGAQHLVIGRALF 195 (210)
T ss_pred hc--c------------cCCEEEECCCCHHHHHHHHHCCCCEEEEChHhh
Confidence 11 0 012444445554444455678999999886533
No 473
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=71.86 E-value=1.1e+02 Score=32.78 Aligned_cols=102 Identities=10% Similarity=0.067 Sum_probs=66.1
Q ss_pred HHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHH-HHHHHHHhhCCCcEEEEe---cCCCCHHHHHHHHHHHHhCCC
Q 018253 79 EAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIM-LIGHTVNCFGASVKVIGN---TGSNSTREAIHATEQGFAVGM 154 (359)
Q Consensus 79 ~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~-li~~~v~~~~grvpViag---vg~~st~~ai~la~~a~~~Ga 154 (359)
+..+..++...++|++.+-++-...+ -+..+ .++.+.+ .+..+.+-++ ....+.+.-+++++.+.++||
T Consensus 97 dvv~~~v~~a~~~Gid~~rifd~lnd------~~~~~~ai~~ak~-~G~~~~~~i~yt~~p~~~~~~~~~~a~~l~~~Ga 169 (593)
T PRK14040 97 DVVERFVERAVKNGMDVFRVFDAMND------PRNLETALKAVRK-VGAHAQGTLSYTTSPVHTLQTWVDLAKQLEDMGV 169 (593)
T ss_pred HHHHHHHHHHHhcCCCEEEEeeeCCc------HHHHHHHHHHHHH-cCCeEEEEEEEeeCCccCHHHHHHHHHHHHHcCC
Confidence 45677788889999999888854444 23222 2333322 2322222222 122346778899999999999
Q ss_pred CEEEEcCCCCCCCCHHHHHHHHHHHHhc--CCeEEE
Q 018253 155 HAALHINPYYGKTSLEGLISHFDSVLSM--GPTIIY 188 (359)
Q Consensus 155 dav~v~pP~y~~~s~~~l~~yf~~Ia~a--~PiiiY 188 (359)
|.+.+.- .....+++++.+.++++.+. .||-++
T Consensus 170 d~i~i~D-t~G~l~P~~~~~lv~~lk~~~~~pi~~H 204 (593)
T PRK14040 170 DSLCIKD-MAGLLKPYAAYELVSRIKKRVDVPLHLH 204 (593)
T ss_pred CEEEECC-CCCCcCHHHHHHHHHHHHHhcCCeEEEE
Confidence 9776654 34456788899999999876 576654
No 474
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=71.85 E-value=55 Score=32.31 Aligned_cols=108 Identities=12% Similarity=0.057 Sum_probs=56.1
Q ss_pred CccccccccCCcccccCCceEEeeecCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEccCc-----c---C-cCCCCHHHH
Q 018253 43 MRSFEVKNRTSAEDIKALRLITAIKTPYLPDGRFDLEAYDDLVNMQIVNGAEGMIVGGTT-----G---E-GQLMSWDEH 113 (359)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~Gi~~al~TPF~~dg~ID~~~l~~li~~li~~Gv~Gl~v~Gst-----G---E-~~~LT~~Er 113 (359)
..+..+|||+-| +|+.+-+..+|... +.+.++.+...+.| -|+++.|.+ | + ...+..++.
T Consensus 7 ig~~~lkNRiv~---------~p~~~~~~~~~~~~-~~~~~~y~~rA~gG-~glii~~~~~v~~~~~~~~~~~~~~~~~~ 75 (353)
T cd02930 7 LGFTTLRNRVLM---------GSMHTGLEELDDGI-DRLAAFYAERARGG-VGLIVTGGFAPNEAGKLGPGGPVLNSPRQ 75 (353)
T ss_pred ECCEEEccccEe---------CCccccccCCCCCC-HHHHHHHHHHhcCC-ceEEEEeeEEeCCcccCCCCCcccCCHHH
Confidence 345566666653 34444555455443 33334443333445 445544432 1 1 134556666
Q ss_pred HHHHHHHHHhhC-CCcEEEEecCC---------------------------CC-------HHHHHHHHHHHHhCCCCEEE
Q 018253 114 IMLIGHTVNCFG-ASVKVIGNTGS---------------------------NS-------TREAIHATEQGFAVGMHAAL 158 (359)
Q Consensus 114 ~~li~~~v~~~~-grvpViagvg~---------------------------~s-------t~~ai~la~~a~~~Gadav~ 158 (359)
..-++.+++.+. ...+++++..+ .+ .++-++.|+.|+++|+|+|-
T Consensus 76 i~~~~~l~~~vh~~g~~~~~QL~h~G~~~~~~~~~~ps~~~~~~~~~~p~~mt~~eI~~i~~~f~~aA~~a~~aGfDgVe 155 (353)
T cd02930 76 AAGHRLITDAVHAEGGKIALQILHAGRYAYHPLCVAPSAIRAPINPFTPRELSEEEIEQTIEDFARCAALAREAGYDGVE 155 (353)
T ss_pred HHHHHHHHHHHHHcCCEEEeeccCCCCCCCCCCCcCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEE
Confidence 666666666542 23567776521 11 23345566777788888886
Q ss_pred EcC
Q 018253 159 HIN 161 (359)
Q Consensus 159 v~p 161 (359)
+..
T Consensus 156 ih~ 158 (353)
T cd02930 156 IMG 158 (353)
T ss_pred Eec
Confidence 643
No 475
>PRK05985 cytosine deaminase; Provisional
Probab=71.77 E-value=80 Score=31.30 Aligned_cols=18 Identities=33% Similarity=0.630 Sum_probs=11.7
Q ss_pred hHhhhhCCceEEEecCCc
Q 018253 223 RVEHYTGNGIVVWSGNDD 240 (359)
Q Consensus 223 ~l~~~~~~~~~v~~G~d~ 240 (359)
.+.++.+.++.|-.|.|.
T Consensus 280 ~~~~l~~~Gv~v~lGtD~ 297 (391)
T PRK05985 280 PVAALRAAGVTVFGGNDG 297 (391)
T ss_pred CHHHHHHCCCeEEEecCC
Confidence 455555567777778774
No 476
>PLN02951 Molybderin biosynthesis protein CNX2
Probab=71.55 E-value=40 Score=33.72 Aligned_cols=79 Identities=10% Similarity=0.052 Sum_probs=51.3
Q ss_pred CCCCHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcE-EEEecCCCCHHHHHHHHHHHHhC
Q 018253 74 GRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVK-VIGNTGSNSTREAIHATEQGFAV 152 (359)
Q Consensus 74 g~ID~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvp-Viagvg~~st~~ai~la~~a~~~ 152 (359)
..++++.+.++++.+.+.|+..|.+.| || +.|.. +-.++++.+.+. .| +. +.+.+.+.... +.++...++
T Consensus 88 ~~ls~eei~~~i~~~~~~Gv~~I~~tG--GE-Pllr~-dl~eli~~l~~~-~g-i~~i~itTNG~lL~---~~~~~L~~a 158 (373)
T PLN02951 88 HLLSQDEIVRLAGLFVAAGVDKIRLTG--GE-PTLRK-DIEDICLQLSSL-KG-LKTLAMTTNGITLS---RKLPRLKEA 158 (373)
T ss_pred ccCCHHHHHHHHHHHHHCCCCEEEEEC--CC-Ccchh-hHHHHHHHHHhc-CC-CceEEEeeCcchHH---HHHHHHHhC
Confidence 458999999999999999999999887 99 44543 455566555432 22 32 33333332222 335666778
Q ss_pred CCCEEEEcC
Q 018253 153 GMHAALHIN 161 (359)
Q Consensus 153 Gadav~v~p 161 (359)
|.|.+.+.-
T Consensus 159 Gld~VnISL 167 (373)
T PLN02951 159 GLTSLNISL 167 (373)
T ss_pred CCCeEEEee
Confidence 999887654
No 477
>cd02922 FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding domain. FCB2 (AKA L-lactate:cytochrome c oxidoreductase) is a respiratory enzyme located in the intermembrane space of fungal mitochondria which catalyzes the oxidation of L-lactate to pyruvate. FCB2 also participates in a short electron-transport chain involving cytochrome c and cytochrome oxidase which ultimately directs the reducing equivalents gained from L-lactate oxidation to oxygen, yielding one molecule of ATP for every L-lactate molecule consumed. FCB2 is composed of 2 domains: a C-terminal flavin-binding domain, which includes the active site for lacate oxidation, and an N-terminal b2-cytochrome domain, required for efficient cytochrome c reduction. FCB2 is a homotetramer and contains two noncovalently bound cofactors, FMN and heme per subunit.
Probab=71.51 E-value=1.1e+02 Score=30.30 Aligned_cols=73 Identities=14% Similarity=0.198 Sum_probs=49.3
Q ss_pred CHHHHHHHHHHHHHCCCCEEEEccCcc--------------Cc--------------------------CCCCHHHHHHH
Q 018253 77 DLEAYDDLVNMQIVNGAEGMIVGGTTG--------------EG--------------------------QLMSWDEHIML 116 (359)
Q Consensus 77 D~~~l~~li~~li~~Gv~Gl~v~GstG--------------E~--------------------------~~LT~~Er~~l 116 (359)
|.+.++.++++..+.|+++|++---+- |- ..++++ .
T Consensus 129 d~~~~~~l~~ra~~ag~~alvltvD~p~~g~r~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~ 204 (344)
T cd02922 129 DRTKTEELLKRAEKLGAKAIFLTVDAPVLGKRERDERLKAEEAVSDGPAGKKTKAKGGGAGRAMSGFIDPTLTWD----D 204 (344)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEECCCCCcCcchhhhhhcCCcCccccccccccccccchHHHHHhhccCCCCCHH----H
Confidence 678899999999999999998843221 11 112332 2
Q ss_pred HHHHHHhhCCCcEEEE-ecCCCCHHHHHHHHHHHHhCCCCEEEEcC
Q 018253 117 IGHTVNCFGASVKVIG-NTGSNSTREAIHATEQGFAVGMHAALHIN 161 (359)
Q Consensus 117 i~~~v~~~~grvpVia-gvg~~st~~ai~la~~a~~~Gadav~v~p 161 (359)
++.+++.. ++||++ |++ + .+-++.+.++|+|++.+..
T Consensus 205 i~~l~~~~--~~PvivKgv~--~----~~dA~~a~~~G~d~I~vsn 242 (344)
T cd02922 205 IKWLRKHT--KLPIVLKGVQ--T----VEDAVLAAEYGVDGIVLSN 242 (344)
T ss_pred HHHHHHhc--CCcEEEEcCC--C----HHHHHHHHHcCCCEEEEEC
Confidence 44444433 578877 453 2 5666788899999999986
No 478
>cd00740 MeTr MeTr subgroup of pterin binding enzymes. This family includes cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=71.44 E-value=93 Score=29.37 Aligned_cols=105 Identities=12% Similarity=0.019 Sum_probs=63.5
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCCCHHHHHHHHHHHHhCCC
Q 018253 75 RFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGM 154 (359)
Q Consensus 75 ~ID~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~st~~ai~la~~a~~~Ga 154 (359)
.-|.+...++++.+++.|++-|=++|..++ .=..+|..+++..+.+.+ .+|+.+-+ .+.+...+-.+++ .|+
T Consensus 22 ~~~~d~~~~~A~~~~~~GAdiIDIG~~~~~--~~~~ee~~r~v~~i~~~~--~~piSIDT--~~~~v~e~aL~~~--~G~ 93 (252)
T cd00740 22 AEDYDEALDVARQQVEGGAQILDLNVDYGG--LDGVSAMKWLLNLLATEP--TVPLMLDS--TNWEVIEAGLKCC--QGK 93 (252)
T ss_pred cCCHHHHHHHHHHHHHCCCCEEEECCCCCC--CCHHHHHHHHHHHHHHhc--CCcEEeeC--CcHHHHHHHHhhC--CCC
Confidence 468899999999999999999999986652 223556666666555443 56765443 3333333333332 388
Q ss_pred CEEEEcCCCCCCCCHHHHHHHHHHHHhc-CCeEEEeC
Q 018253 155 HAALHINPYYGKTSLEGLISHFDSVLSM-GPTIIYNV 190 (359)
Q Consensus 155 dav~v~pP~y~~~s~~~l~~yf~~Ia~a-~PiiiYn~ 190 (359)
+-+--+.-.- .++.+.+-+..+++. .|+++-+.
T Consensus 94 ~iINsIs~~~---~~e~~~~~~~~~~~~~~~vV~m~~ 127 (252)
T cd00740 94 CVVNSINLED---GEERFLKVARLAKEHGAAVVVLAF 127 (252)
T ss_pred cEEEeCCCCC---CccccHHHHHHHHHhCCCEEEecc
Confidence 8665554221 113344444555554 68877665
No 479
>cd06285 PBP1_LacI_like_7 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=71.32 E-value=60 Score=29.50 Aligned_cols=93 Identities=13% Similarity=0.197 Sum_probs=58.1
Q ss_pred CHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEE---------ecCCCCHHHHHHHHH
Q 018253 77 DLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIG---------NTGSNSTREAIHATE 147 (359)
Q Consensus 77 D~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpVia---------gvg~~st~~ai~la~ 147 (359)
|.+.....++.+.+.+++|+++.++... ++ .++.+.+ .++||+. .|+..+.+-....++
T Consensus 40 ~~~~~~~~i~~l~~~~~dgiii~~~~~~------~~---~~~~~~~---~~iPvv~~~~~~~~~~~V~~d~~~ag~~a~~ 107 (265)
T cd06285 40 NPDAQRRAIEMLLDRRVDGLILGDARSD------DH---FLDELTR---RGVPFVLVLRHAGTSPAVTGDDVLGGRLATR 107 (265)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEecCCCC------hH---HHHHHHH---cCCCEEEEccCCCCCCEEEeCcHHHHHHHHH
Confidence 6678888999999999999999865422 12 1333222 2466653 355667777888899
Q ss_pred HHHhCCCCEEEEcCCCCCCCCHHHHHHHHHHHHh
Q 018253 148 QGFAVGMHAALHINPYYGKTSLEGLISHFDSVLS 181 (359)
Q Consensus 148 ~a~~~Gadav~v~pP~y~~~s~~~l~~yf~~Ia~ 181 (359)
+..+.|..-+.++.........++-.+-|.+..+
T Consensus 108 ~L~~~g~~~i~~i~~~~~~~~~~~R~~Gf~~~~~ 141 (265)
T cd06285 108 HLLDLGHRRIAVLAGPDYASTARDRLAGFRAALA 141 (265)
T ss_pred HHHHCCCccEEEEeCCcccccHHHHHHHHHHHHH
Confidence 9999998877666432222222333444444443
No 480
>TIGR00693 thiE thiamine-phosphate pyrophosphorylase. This model includes ThiE from Bacillus subtilis but excludes its paralog, the regulatory protein TenI, and neighbors of TenI.
Probab=71.28 E-value=27 Score=30.99 Aligned_cols=108 Identities=16% Similarity=0.186 Sum_probs=0.0
Q ss_pred HHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCCCHHHHHHHHHHHHhCCCCEEEEcCCC
Q 018253 84 LVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPY 163 (359)
Q Consensus 84 li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~st~~ai~la~~a~~~Gadav~v~pP~ 163 (359)
+++...+.|++|+.+. ...+..++.+.++. -..++|++..+.+++ +.|.+.|+|.+.+. |.
T Consensus 65 ~~~la~~~g~~GvHl~-----~~~~~~~~~r~~~~---------~~~~ig~s~h~~~e~----~~a~~~g~dyi~~~-~v 125 (196)
T TIGR00693 65 RVDLALALGADGVHLG-----QDDLPASEARALLG---------PDKIIGVSTHNLEEL----AEAEAEGADYIGFG-PI 125 (196)
T ss_pred HHHHHHHcCCCEEecC-----cccCCHHHHHHhcC---------CCCEEEEeCCCHHHH----HHHhHcCCCEEEEC-Cc
Q ss_pred CCCCCHHH-----HHHHHHHHHhcCCeEEEeCCCCCCCCCCHHHHHHHhcCCCeEEE
Q 018253 164 YGKTSLEG-----LISHFDSVLSMGPTIIYNVPSRTGQDIPPRVIHTMAQSPNLAGV 215 (359)
Q Consensus 164 y~~~s~~~-----l~~yf~~Ia~a~PiiiYn~P~~tg~~ls~e~l~~La~~pnivGi 215 (359)
|...+..+ -.+.++.+.+..| +.|-...=.++++.+.++.+. ++.|+
T Consensus 126 ~~t~~k~~~~~~~g~~~l~~~~~~~~----~~pv~a~GGI~~~~~~~~~~~-G~~gv 177 (196)
T TIGR00693 126 FPTPTKKDPAPPAGVELLREIAATSI----DIPIVAIGGITLENAAEVLAA-GADGV 177 (196)
T ss_pred cCCCCCCCCCCCCCHHHHHHHHHhcC----CCCEEEECCcCHHHHHHHHHc-CCCEE
No 481
>PRK14041 oxaloacetate decarboxylase; Provisional
Probab=71.25 E-value=1e+02 Score=31.95 Aligned_cols=100 Identities=7% Similarity=0.022 Sum_probs=67.9
Q ss_pred HHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhC-CCcEEEEecC-----CCCHHHHHHHHHHHHhC
Q 018253 79 EAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFG-ASVKVIGNTG-----SNSTREAIHATEQGFAV 152 (359)
Q Consensus 79 ~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~-grvpViagvg-----~~st~~ai~la~~a~~~ 152 (359)
+-.+..++..+++|++-+-++-+..|. +-++.+++.+. ....|.+.++ ..+.+..+++++.+.++
T Consensus 95 Dvv~~fv~~A~~~Gvd~irif~~lnd~---------~n~~~~i~~ak~~G~~v~~~i~~t~~p~~t~e~~~~~a~~l~~~ 165 (467)
T PRK14041 95 DVVELFVKKVAEYGLDIIRIFDALNDI---------RNLEKSIEVAKKHGAHVQGAISYTVSPVHTLEYYLEFARELVDM 165 (467)
T ss_pred hhhHHHHHHHHHCCcCEEEEEEeCCHH---------HHHHHHHHHHHHCCCEEEEEEEeccCCCCCHHHHHHHHHHHHHc
Confidence 556777888899999999998877772 22333333332 1123432221 22568899999999999
Q ss_pred CCCEEEEcCCCCCCCCHHHHHHHHHHHHhc--CCeEEE
Q 018253 153 GMHAALHINPYYGKTSLEGLISHFDSVLSM--GPTIIY 188 (359)
Q Consensus 153 Gadav~v~pP~y~~~s~~~l~~yf~~Ia~a--~PiiiY 188 (359)
|+|.+.+.-. ....++.++.+.++++-+. .||-++
T Consensus 166 Gad~I~i~Dt-~G~l~P~~v~~Lv~~lk~~~~vpI~~H 202 (467)
T PRK14041 166 GVDSICIKDM-AGLLTPKRAYELVKALKKKFGVPVEVH 202 (467)
T ss_pred CCCEEEECCc-cCCcCHHHHHHHHHHHHHhcCCceEEE
Confidence 9997776543 3456788899999999876 566554
No 482
>COG2100 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=71.16 E-value=13 Score=36.57 Aligned_cols=137 Identities=17% Similarity=0.150 Sum_probs=84.1
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhh-------CC-CcEEEEecCCCCHHHHHHHHH
Q 018253 76 FDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCF-------GA-SVKVIGNTGSNSTREAIHATE 147 (359)
Q Consensus 76 ID~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~-------~g-rvpViagvg~~st~~ai~la~ 147 (359)
.=+.-+.++++.+-+. +|+-+...-.-+..||.+--.+|.++-++.. .. ..+.++|+-..+.+.+++.|+
T Consensus 172 ~lYP~l~~lVqalk~~--~~v~vVSmQTng~~L~~~lv~eLeeAGLdRiNlSv~aLDpk~Ak~L~G~~dYdv~kvle~aE 249 (414)
T COG2100 172 LLYPHLVDLVQALKEH--KGVEVVSMQTNGVLLSKKLVDELEEAGLDRINLSVDALDPKLAKMLAGRKDYDVKKVLEVAE 249 (414)
T ss_pred ccchhHHHHHHHHhcC--CCceEEEEeeCceeccHHHHHHHHHhCCceEEeecccCCHHHHHHhcCccccCHHHHHHHHH
Confidence 4455566777766554 5554555555567888877777766644322 22 234688888999999999999
Q ss_pred HHHhCCCCEEEEcCCCC-CCCCHHH---HHHHHHHHHhc---CCeEEEeC-CCCCCC------CCCH-HHHHHHhcCCCe
Q 018253 148 QGFAVGMHAALHINPYY-GKTSLEG---LISHFDSVLSM---GPTIIYNV-PSRTGQ------DIPP-RVIHTMAQSPNL 212 (359)
Q Consensus 148 ~a~~~Gadav~v~pP~y-~~~s~~~---l~~yf~~Ia~a---~PiiiYn~-P~~tg~------~ls~-e~l~~La~~pni 212 (359)
...+.|+| +++. |.+ ...++++ +++|-+++..- -|+-++++ |...|. .++. ++...|.+...=
T Consensus 250 ~i~~a~id-vlIa-Pv~lPG~ND~E~~~iIe~A~~iGaGkk~p~lgiQkyipyk~GRkp~~~k~~~fkeFYrwLrelEke 327 (414)
T COG2100 250 YIANAGID-VLIA-PVWLPGVNDDEMPKIIEWAREIGAGKKWPPLGIQKYIPYKFGRKPVIAKVWPFKEFYRWLRELEKE 327 (414)
T ss_pred HHHhCCCC-EEEe-eeecCCcChHHHHHHHHHHHHhCCCCCCCCcceEEeeeecccCCccccccCcHHHHHHHHHHHHHH
Confidence 99999998 3444 444 3455554 56666666542 36667764 544443 3454 444455555444
Q ss_pred EEEe
Q 018253 213 AGVK 216 (359)
Q Consensus 213 vGiK 216 (359)
.|+|
T Consensus 328 tg~k 331 (414)
T COG2100 328 TGVK 331 (414)
T ss_pred hCCC
Confidence 4455
No 483
>PRK04302 triosephosphate isomerase; Provisional
Probab=71.05 E-value=64 Score=29.55 Aligned_cols=65 Identities=17% Similarity=0.147 Sum_probs=41.0
Q ss_pred CCHHHHHHHHHHHHHhhCCCcEEEEecCCCCHHHHHHHHHHHHhCCCCEEEEcCCCCCCCCHHHHHHHHH
Q 018253 108 MSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFD 177 (359)
Q Consensus 108 LT~~Er~~li~~~v~~~~grvpViagvg~~st~~ai~la~~a~~~Gadav~v~pP~y~~~s~~~l~~yf~ 177 (359)
-+.++-.++++.+.+. ..++||++|-| -++.+.++. +.+.|+|++++..-.....+..++.+-|.
T Consensus 155 ~~~~~i~~~~~~ir~~-~~~~pvi~Ggg-I~~~e~~~~---~~~~gadGvlVGsa~l~~~~~~~~~~~~~ 219 (223)
T PRK04302 155 AKPEVVEDAVEAVKKV-NPDVKVLCGAG-ISTGEDVKA---ALELGADGVLLASGVVKAKDPEAALRDLV 219 (223)
T ss_pred CCHHHHHHHHHHHHhc-cCCCEEEEECC-CCCHHHHHH---HHcCCCCEEEEehHHhCCcCHHHHHHHHH
Confidence 3455555666655553 34689999855 444444443 45699999999877766566665555443
No 484
>TIGR00970 leuA_yeast 2-isopropylmalate synthase, yeast type. A larger family of homologous proteins includes homocitrate synthase, distinct lineages of 2-isopropylmalate synthase, several distinct, uncharacterized, orthologous sets in the Archaea, and other related enzymes. This model describes a family of 2-isopropylmalate synthases as found in yeasts and in a minority of studied bacteria.
Probab=70.73 E-value=24 Score=37.38 Aligned_cols=107 Identities=18% Similarity=0.058 Sum_probs=78.0
Q ss_pred cCCCCC--CCCCHHHHHHHHHHHHHCCCC------EEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEec-CCCC
Q 018253 68 TPYLPD--GRFDLEAYDDLVNMQIVNGAE------GMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNT-GSNS 138 (359)
Q Consensus 68 TPF~~d--g~ID~~~l~~li~~li~~Gv~------Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagv-g~~s 138 (359)
-||... .+.|.+-+.++++..++.|++ -+-+.-|+| .+++.+-.++++.+.+....+.++.+++ .+++
T Consensus 171 v~f~~Ed~~r~d~~~l~~~~~~a~~ag~~~~~~~~~i~l~DTvG---~a~P~~~~~~i~~l~~~~~~~~~~~l~vH~HND 247 (564)
T TIGR00970 171 FEYSPESFSDTELEFAKEVCEAVKEVWAPTPERPIIFNLPATVE---MTTPNVYADSIEYFSTNIAEREKVCLSLHPHND 247 (564)
T ss_pred EEEecccCCCCCHHHHHHHHHHHHHhCCCccCCeeEEEeccccC---ccCHHHHHHHHHHHHHhcCcccCceEEEEECCC
Confidence 456432 347999999999999999875 566777888 6799999999999988776543343443 4778
Q ss_pred HHHHHHHHHHHHhCCCCEEEEcCCCCC----CCCHHHHHHHHH
Q 018253 139 TREAIHATEQGFAVGMHAALHINPYYG----KTSLEGLISHFD 177 (359)
Q Consensus 139 t~~ai~la~~a~~~Gadav~v~pP~y~----~~s~~~l~~yf~ 177 (359)
.--++..+-.|.++||+.+-..+=-.. ..+-++++-.+.
T Consensus 248 ~GlAvANslaAv~aGa~~v~gt~~G~GERaGNa~le~lv~~L~ 290 (564)
T TIGR00970 248 RGTAVAAAELGFLAGADRIEGCLFGNGERTGNVDLVTLALNLY 290 (564)
T ss_pred CChHHHHHHHHHHhCCCEEEeecCcCCccccCccHHHHHHHHH
Confidence 889999999999999999885532222 134455555553
No 485
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=70.65 E-value=67 Score=27.43 Aligned_cols=91 Identities=12% Similarity=0.098 Sum_probs=60.0
Q ss_pred HHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecC-CCCHHHHHHHHHHHHhCCCCEEEE
Q 018253 81 YDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTG-SNSTREAIHATEQGFAVGMHAALH 159 (359)
Q Consensus 81 l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg-~~st~~ai~la~~a~~~Gadav~v 159 (359)
.++.++...+.+++-+.+.+-.|. |.+.-.++++...+.--..++|++|=+ ....++.-+..+.++++|+|++.-
T Consensus 41 ~e~~v~aa~~~~adiVglS~l~~~----~~~~~~~~~~~l~~~gl~~~~vivGG~~vi~~~d~~~~~~~l~~~Gv~~vF~ 116 (134)
T TIGR01501 41 QEEFIKAAIETKADAILVSSLYGH----GEIDCKGLRQKCDEAGLEGILLYVGGNLVVGKQDFPDVEKRFKEMGFDRVFA 116 (134)
T ss_pred HHHHHHHHHHcCCCEEEEeccccc----CHHHHHHHHHHHHHCCCCCCEEEecCCcCcChhhhHHHHHHHHHcCCCEEEC
Confidence 467788888899998888776653 555667777777665334566655432 334455555556678899988742
Q ss_pred cCCCCCCCCHHHHHHHHHHHH
Q 018253 160 INPYYGKTSLEGLISHFDSVL 180 (359)
Q Consensus 160 ~pP~y~~~s~~~l~~yf~~Ia 180 (359)
| ..+.+++.+|.+.-.
T Consensus 117 --p---gt~~~~iv~~l~~~~ 132 (134)
T TIGR01501 117 --P---GTPPEVVIADLKKDL 132 (134)
T ss_pred --c---CCCHHHHHHHHHHHh
Confidence 1 235688999987653
No 486
>cd00530 PTE Phosphotriesterase (PTE) catalyzes the hydrolysis of organophosphate nerve agents, including the chemical warfare agents VX, soman, and sarin as well as the insecticide paraoxon. PTE exists as a homodimer with one active site per monomer. The active site is located next to a binuclear metal center, at the C-terminal end of a TIM alpha- beta barrel motif. The native enzyme contains two zinc ions at the active site however these can be replaced with other metals such as cobalt, cadmium, nickel or manganese and the enzyme remains active.
Probab=70.61 E-value=91 Score=29.35 Aligned_cols=31 Identities=16% Similarity=0.210 Sum_probs=23.8
Q ss_pred CCCCC-HHHHHHHHHHHHHCCCCEEEEccCcc
Q 018253 73 DGRFD-LEAYDDLVNMQIVNGAEGMIVGGTTG 103 (359)
Q Consensus 73 dg~ID-~~~l~~li~~li~~Gv~Gl~v~GstG 103 (359)
|-.+| ++....-++...++|+..++..|++|
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~Gvttiv~~~~~~ 56 (293)
T cd00530 25 DFDLADVEAAKEELKRFRAHGGRTIVDATPPG 56 (293)
T ss_pred ccchhhHHHHHHHHHHHHHcCCCeEEEcCCcc
Confidence 33444 57777788888899999999999864
No 487
>PRK12999 pyruvate carboxylase; Reviewed
Probab=70.58 E-value=46 Score=38.44 Aligned_cols=82 Identities=13% Similarity=0.142 Sum_probs=70.9
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCCCHHHHHHHHHHHHhCCC
Q 018253 75 RFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGM 154 (359)
Q Consensus 75 ~ID~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~st~~ai~la~~a~~~Ga 154 (359)
..|.+-+.++++.+.+.|++.|.+.-|.|= |++++-.++++.+.+.+ ++||=+++ +++.--++.-+-.|.++||
T Consensus 687 ~~~~~~~~~~a~~l~~~Ga~~i~ikDt~G~---l~P~~~~~lv~~lk~~~--~ipi~~H~-Hnt~Gla~an~laA~~aGa 760 (1146)
T PRK12999 687 KYDLDYYVDLAKELEKAGAHILAIKDMAGL---LKPAAAYELVSALKEEV--DLPIHLHT-HDTSGNGLATYLAAAEAGV 760 (1146)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEECCccCC---CCHHHHHHHHHHHHHHc--CCeEEEEe-CCCCchHHHHHHHHHHhCC
Confidence 489999999999999999999999999995 89999999999999877 47887766 4677788888999999999
Q ss_pred CEEEEcCC
Q 018253 155 HAALHINP 162 (359)
Q Consensus 155 dav~v~pP 162 (359)
|.+=..--
T Consensus 761 d~vD~av~ 768 (1146)
T PRK12999 761 DIVDVAVA 768 (1146)
T ss_pred CEEEecch
Confidence 99865543
No 488
>PRK05628 coproporphyrinogen III oxidase; Validated
Probab=70.48 E-value=56 Score=32.39 Aligned_cols=113 Identities=14% Similarity=0.153 Sum_probs=61.7
Q ss_pred HHHHHHHHHHHHHC------CCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhC--CCcEEEEecCCCCHHHHHHHHHHH
Q 018253 78 LEAYDDLVNMQIVN------GAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFG--ASVKVIGNTGSNSTREAIHATEQG 149 (359)
Q Consensus 78 ~~~l~~li~~li~~------Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~--grvpViagvg~~st~~ai~la~~a 149 (359)
.+.+.+.+++..+. .++.++++|. ....|+.++..++++.+.+..+ ..+.+-+-+...+. +-+..+..
T Consensus 39 ~~~l~~Ei~~~~~~~~~~~~~i~~i~~GGG--TPs~l~~~~l~~ll~~i~~~~~~~~~~e~t~e~~p~~i--~~e~l~~l 114 (375)
T PRK05628 39 LDALRAELELAAAVLGDPAPPVSTVFVGGG--TPSLLGAEGLARVLDAVRDTFGLAPGAEVTTEANPEST--SPEFFAAL 114 (375)
T ss_pred HHHHHHHHHHHHHhhccCCCceeEEEeCCC--ccccCCHHHHHHHHHHHHHhCCCCCCCEEEEEeCCCCC--CHHHHHHH
Confidence 45566666554432 2667776653 4667778888888887766432 22222221111111 22444555
Q ss_pred HhCCCCEEEEcCCCCC--------C-CCHHHHHHHHHHHHhc-CC-e---EEEeCCCCC
Q 018253 150 FAVGMHAALHINPYYG--------K-TSLEGLISHFDSVLSM-GP-T---IIYNVPSRT 194 (359)
Q Consensus 150 ~~~Gadav~v~pP~y~--------~-~s~~~l~~yf~~Ia~a-~P-i---iiYn~P~~t 194 (359)
+++|++.+.+-.-.+. + .+.+++.+-++.+.++ .+ + ++|..|.-|
T Consensus 115 ~~~G~~rvslGvQS~~~~~L~~l~R~~s~~~~~~a~~~l~~~g~~~v~~dli~GlPgqt 173 (375)
T PRK05628 115 RAAGFTRVSLGMQSAAPHVLAVLDRTHTPGRAVAAAREARAAGFEHVNLDLIYGTPGES 173 (375)
T ss_pred HHcCCCEEEEecccCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCCcEEEEEeccCCCCC
Confidence 5578887777665442 1 3556666666665554 34 4 566667543
No 489
>TIGR02634 xylF D-xylose ABC transporter, substrate-binding protein. Members of this family are periplasmic (when in Gram-negative bacteria) binding proteins for D-xylose import by a high-affinity ATP-binding cassette (ABC) transporter.
Probab=70.37 E-value=45 Score=31.57 Aligned_cols=78 Identities=13% Similarity=0.040 Sum_probs=50.5
Q ss_pred CHHHHHHHHHHHHHhhCC-CcEEEEecCCCCHHHHHHHHHHHHhCCCCEEEEcCCCCCCCCHHHHHHHHHHHHhc-CCeE
Q 018253 109 SWDEHIMLIGHTVNCFGA-SVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYYGKTSLEGLISHFDSVLSM-GPTI 186 (359)
Q Consensus 109 T~~Er~~li~~~v~~~~g-rvpViagvg~~st~~ai~la~~a~~~Gadav~v~pP~y~~~s~~~l~~yf~~Ia~a-~Pii 186 (359)
..+=+..+.+.+.+++.. ...++..-+..+.+...+..+...+.++|++++.++. ...+...++.+.++ .|++
T Consensus 9 ~~~~~~~~~~~i~~~a~~~g~~v~~~~~~~~~~~q~~~i~~l~~~~vDgIIi~~~~-----~~~~~~~l~~~~~~~iPvV 83 (302)
T TIGR02634 9 RLERWQKDRDIFVAAAESLGAKVFVQSANGNEAKQISQIENLIARGVDVLVIIPQN-----GQVLSNAVQEAKDEGIKVV 83 (302)
T ss_pred chhhHHHHHHHHHHHHHhcCCEEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEeCCC-----hhHHHHHHHHHHHCCCeEE
Confidence 333344444444443322 3566666666678888899999999999999987543 23344556666555 7999
Q ss_pred EEeCC
Q 018253 187 IYNVP 191 (359)
Q Consensus 187 iYn~P 191 (359)
+.|.+
T Consensus 84 ~~d~~ 88 (302)
T TIGR02634 84 AYDRL 88 (302)
T ss_pred EecCc
Confidence 99865
No 490
>TIGR01464 hemE uroporphyrinogen decarboxylase. This model represents uroporphyrinogen decarboxylase (HemE), which converts uroporphyrinogen III to coproporphyrinogen III. This step takes the pathway toward protoporphyrin IX, a common precursor of both heme and chlorophyll, rather than toward precorrin 2 and its products.
Probab=70.35 E-value=25 Score=34.31 Aligned_cols=72 Identities=14% Similarity=0.059 Sum_probs=45.7
Q ss_pred HHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHH----HHHHHhhC---CCcEEEEecCCCCHHHHHHHHHHHHhCCC
Q 018253 82 DDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLI----GHTVNCFG---ASVKVIGNTGSNSTREAIHATEQGFAVGM 154 (359)
Q Consensus 82 ~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li----~~~v~~~~---grvpViagvg~~st~~ai~la~~a~~~Ga 154 (359)
.++++.+++.|++++.+.-++++ .||.++..+.+ +.+++.++ +.+|++-..+. +. .+.....+.|+
T Consensus 183 ~~~~~~~~eaGad~i~i~d~~~~--~lsp~~f~ef~~p~~k~i~~~i~~~~~~~~ilh~cg~--~~---~~~~~~~~~~~ 255 (338)
T TIGR01464 183 IEYLVEQVKAGAQAVQIFDSWAG--ALSPEDFEEFVLPYLKKIIEEVKARLPNVPVILFAKG--AG---HLLEELAETGA 255 (338)
T ss_pred HHHHHHHHHcCCCEEEEECCccc--cCCHHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEeCC--cH---HHHHHHHhcCC
Confidence 34455567799999988776664 59999988766 34444443 34566644442 22 33445566899
Q ss_pred CEEEEc
Q 018253 155 HAALHI 160 (359)
Q Consensus 155 dav~v~ 160 (359)
|.+.+-
T Consensus 256 ~~~s~d 261 (338)
T TIGR01464 256 DVVGLD 261 (338)
T ss_pred CEEEeC
Confidence 887554
No 491
>COG0134 TrpC Indole-3-glycerol phosphate synthase [Amino acid transport and metabolism]
Probab=70.33 E-value=14 Score=35.04 Aligned_cols=63 Identities=16% Similarity=0.142 Sum_probs=46.6
Q ss_pred hCCCcEEEEecCCC--C------HHHHHHHHHHHHhCCCCEEEEcC-CCCCCCCHHHHHHHHHHHHhc--CCeEEEeC
Q 018253 124 FGASVKVIGNTGSN--S------TREAIHATEQGFAVGMHAALHIN-PYYGKTSLEGLISHFDSVLSM--GPTIIYNV 190 (359)
Q Consensus 124 ~~grvpViagvg~~--s------t~~ai~la~~a~~~Gadav~v~p-P~y~~~s~~~l~~yf~~Ia~a--~PiiiYn~ 190 (359)
..++..||+=+--. | -.+-.+.++.+++.||.++.+++ |.||..+. +|.+.+.++ .||+--|+
T Consensus 42 ~~~~~~vIAEvKkaSPS~G~ir~d~dp~~ia~~Ye~~GAa~iSVLTd~~~F~Gs~----e~L~~v~~~v~~PvL~KDF 115 (254)
T COG0134 42 ASGKPAVIAEVKKASPSKGLIREDFDPVEIAKAYEEGGAAAISVLTDPKYFQGSF----EDLRAVRAAVDLPVLRKDF 115 (254)
T ss_pred cCCCceEEEEeecCCCCCCcccccCCHHHHHHHHHHhCCeEEEEecCccccCCCH----HHHHHHHHhcCCCeeeccC
Confidence 36789999976322 2 22467799999999999998877 89998884 455777665 68877664
No 492
>cd07898 Adenylation_DNA_ligase Adenylation domain of ATP-dependent DNA Ligases. ATP-dependent polynucleotide ligases catalyze phosphodiester bond formation using nicked nucleic acid substrates with the high energy nucleotide of ATP as a cofactor in a three step reaction mechanism. DNA ligases play a vital role in the diverse processes of DNA replication, recombination and repair. ATP-dependent ligases are present in many organisms such as viruses, bacteriophages, eukarya, archaea and bacteria. Some organisms express a variety of different ligases which appear to be targeted to specific functions. ATP-dependent DNA ligases have a highly modular architecture consisting of a unique arrangement of two or more discrete domains including a DNA-binding domain, an adenylation (nucleotidyltransferase (NTase)) domain, and an oligonucleotide/oligosaccharide binding (OB)-fold domain. The adenylation domain binds ATP and contains many of the active-site residues. The adenylation and C-terminal OB-f
Probab=70.06 E-value=14 Score=33.24 Aligned_cols=59 Identities=14% Similarity=0.035 Sum_probs=49.6
Q ss_pred CcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCCCHHHHHHHHHHHHhCCCCEEEEcCC
Q 018253 104 EGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINP 162 (359)
Q Consensus 104 E~~~LT~~Er~~li~~~v~~~~grvpViagvg~~st~~ai~la~~a~~~Gadav~v~pP 162 (359)
+...++..||+++++..+....+++.+.-.....+.++..++-+.+.+.|-.++|+=.|
T Consensus 124 ~l~~~p~~eR~~~L~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~EGim~K~~ 182 (201)
T cd07898 124 SLLDRPLRERRQLLEELFVEIPGRIRIAPALPVESAEELEAAFARARARGNEGLMLKDP 182 (201)
T ss_pred chhhCCHHHHHHHHHHhhcCCCCcEEEeeeEEcCCHHHHHHHHHHHHHcCCceEEEeCC
Confidence 44568999999999999877667777766666678888999999999999999999886
No 493
>PRK00208 thiG thiazole synthase; Reviewed
Probab=70.04 E-value=1e+02 Score=29.26 Aligned_cols=176 Identities=14% Similarity=0.068 Sum_probs=100.2
Q ss_pred HHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEec-CCCCHHHHHHHHHHHHhC-CCCEE
Q 018253 80 AYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNT-GSNSTREAIHATEQGFAV-GMHAA 157 (359)
Q Consensus 80 ~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagv-g~~st~~ai~la~~a~~~-Gadav 157 (359)
++.-+.+-+.++|.+-+.+.=--=.... +. ..+++..- ..++.++-++ |..+.+||+..++.|.++ |-+.+
T Consensus 22 s~~~~~~ai~asg~~ivTvalrR~~~~~-~~---~~~~~~i~---~~~~~~lpNTaG~~ta~eAv~~a~lare~~~~~~i 94 (250)
T PRK00208 22 SPQVMQEAIEASGAEIVTVALRRVNLGQ-GG---DNLLDLLP---PLGVTLLPNTAGCRTAEEAVRTARLAREALGTNWI 94 (250)
T ss_pred CHHHHHHHHHHhCCCeEEEEEEeecCCC-Cc---chHHhhcc---ccCCEECCCCCCCCCHHHHHHHHHHHHHHhCCCeE
Confidence 3444455566788887666431111100 11 23333321 1366777775 566889999999999887 45655
Q ss_pred ---EEcCCCCCCCCHHHHHHHHHHHHhcC-CeEEEeCCCCCCCCCCHHHHHHHhcC-CCe-------EEEeccCchh-hH
Q 018253 158 ---LHINPYYGKTSLEGLISHFDSVLSMG-PTIIYNVPSRTGQDIPPRVIHTMAQS-PNL-------AGVKECVGND-RV 224 (359)
Q Consensus 158 ---~v~pP~y~~~s~~~l~~yf~~Ia~a~-PiiiYn~P~~tg~~ls~e~l~~La~~-pni-------vGiK~ss~d~-~l 224 (359)
++..|+|..++..+.++--+.+.+.. -++-|-.+ ++.+.++|++. +.+ +|=.....++ .+
T Consensus 95 KlEVi~d~~~llpd~~~tv~aa~~L~~~Gf~vlpyc~~-------d~~~ak~l~~~G~~~vmPlg~pIGsg~gi~~~~~i 167 (250)
T PRK00208 95 KLEVIGDDKTLLPDPIETLKAAEILVKEGFVVLPYCTD-------DPVLAKRLEEAGCAAVMPLGAPIGSGLGLLNPYNL 167 (250)
T ss_pred EEEEecCCCCCCcCHHHHHHHHHHHHHCCCEEEEEeCC-------CHHHHHHHHHcCCCEeCCCCcCCCCCCCCCCHHHH
Confidence 34448888888899999999998773 44436443 35666777643 232 3311111122 12
Q ss_pred hhhhC-CceEEEecC----CchhhhhhhhcCCceeeccccccc---HHHHHHHH
Q 018253 225 EHYTG-NGIVVWSGN----DDQCHDARWNHGATGVISVTSNLV---PGMMRELM 270 (359)
Q Consensus 225 ~~~~~-~~~~v~~G~----d~~~~~~~l~~Ga~G~is~~an~~---P~l~~~l~ 270 (359)
..... .++.|+.+. .+.... ++.+|++|++.+++-.- |..+.+-|
T Consensus 168 ~~i~e~~~vpVIveaGI~tpeda~~-AmelGAdgVlV~SAItka~dP~~ma~af 220 (250)
T PRK00208 168 RIIIEQADVPVIVDAGIGTPSDAAQ-AMELGADAVLLNTAIAVAGDPVAMARAF 220 (250)
T ss_pred HHHHHhcCCeEEEeCCCCCHHHHHH-HHHcCCCEEEEChHhhCCCCHHHHHHHH
Confidence 21111 345555532 233443 48899999998877665 66555433
No 494
>PRK05301 pyrroloquinoline quinone biosynthesis protein PqqE; Provisional
Probab=70.03 E-value=19 Score=35.64 Aligned_cols=80 Identities=13% Similarity=0.045 Sum_probs=52.7
Q ss_pred CCCCCHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCCCHHHHHHHHHHHHhC
Q 018253 73 DGRFDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAV 152 (359)
Q Consensus 73 dg~ID~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~st~~ai~la~~a~~~ 152 (359)
.++++.+.+.++++.+.+.|+..|.+.| ||-.. ..+..++++.+.+. .+.+. +.++.+--+-+.++...+.
T Consensus 43 ~~~~~~e~~~~ii~~~~~~g~~~v~~~G--GEPll--~~~~~~il~~~~~~---g~~~~--i~TNG~ll~~~~~~~L~~~ 113 (378)
T PRK05301 43 GAELSTEEWIRVLREARALGALQLHFSG--GEPLL--RKDLEELVAHAREL---GLYTN--LITSGVGLTEARLAALKDA 113 (378)
T ss_pred cCCCCHHHHHHHHHHHHHcCCcEEEEEC--CccCC--chhHHHHHHHHHHc---CCcEE--EECCCccCCHHHHHHHHHc
Confidence 4679999999999999999999988877 99643 33456666665432 23333 3333333233445566678
Q ss_pred CCCEEEEcC
Q 018253 153 GMHAALHIN 161 (359)
Q Consensus 153 Gadav~v~p 161 (359)
|.+.+.+.-
T Consensus 114 g~~~v~iSl 122 (378)
T PRK05301 114 GLDHIQLSF 122 (378)
T ss_pred CCCEEEEEe
Confidence 888876653
No 495
>PF03932 CutC: CutC family; InterPro: IPR005627 Copper transport in Escherichia coli is mediated by the products of at least six genes, cutA, cutB, cutC, cutD, cutE, and cutF. A mutation in one or more of these genes results in an increased copper sensitivity. Members of this family are between 200 and 300 amino acids in length and are found in both eukaryotes and bacteria.; GO: 0005507 copper ion binding, 0055070 copper ion homeostasis; PDB: 2BDQ_A 3IWP_I 1X8C_B 1X7I_A 1TWD_B.
Probab=69.95 E-value=15 Score=33.73 Aligned_cols=80 Identities=20% Similarity=0.283 Sum_probs=47.9
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCCCHHHHHHHHHHHHhCCCC
Q 018253 76 FDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMH 155 (359)
Q Consensus 76 ID~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~st~~ai~la~~a~~~Gad 155 (359)
-+++.+.+-++.+.+.|++|++++.-+-++. +..+-=.+| ++.+. ..|+..+=.-..+.+-.+..+...++|++
T Consensus 69 ~E~~~M~~dI~~~~~~GadG~VfG~L~~dg~-iD~~~~~~L----i~~a~-~~~~tFHRAfD~~~d~~~al~~L~~lG~~ 142 (201)
T PF03932_consen 69 EEIEIMKEDIRMLRELGADGFVFGALTEDGE-IDEEALEEL----IEAAG-GMPVTFHRAFDEVPDPEEALEQLIELGFD 142 (201)
T ss_dssp HHHHHHHHHHHHHHHTT-SEEEE--BETTSS-B-HHHHHHH----HHHHT-TSEEEE-GGGGGSSTHHHHHHHHHHHT-S
T ss_pred HHHHHHHHHHHHHHHcCCCeeEEEeECCCCC-cCHHHHHHH----HHhcC-CCeEEEeCcHHHhCCHHHHHHHHHhcCCC
Confidence 4566788888899999999988777666654 444333333 34343 57888875433333444555566677999
Q ss_pred EEEEcC
Q 018253 156 AALHIN 161 (359)
Q Consensus 156 av~v~p 161 (359)
.|+-.-
T Consensus 143 rVLTSG 148 (201)
T PF03932_consen 143 RVLTSG 148 (201)
T ss_dssp EEEEST
T ss_pred EEECCC
Confidence 998863
No 496
>cd00465 URO-D_CIMS_like The URO-D_CIMS_like protein superfamily includes bacterial and eukaryotic uroporphyrinogen decarboxylases (URO-D), coenzyme M methyltransferases and other putative bacterial methyltransferases, as well as cobalamine (B12) independent methionine synthases. Despite their sequence similarities, members of this family have clearly different functions. Uroporphyrinogen decarboxylase (URO-D) decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, an important branching point of the tetrapyrrole biosynthetic pathway. The methyltransferases represented here are important for ability of methanogenic organisms to use other compounds than carbon dioxide for reduction to methane, and methionine synthases transfer a methyl group from a folate cofactor to L-homocysteine in a reaction requiring zinc.
Probab=69.94 E-value=35 Score=32.45 Aligned_cols=77 Identities=9% Similarity=0.082 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHCCCCEEEEccCccCc--CCCCHHHHHHHH----HHHHHhhC-CCcEEEEecCCCCHHHHHHHHHHHHh
Q 018253 79 EAYDDLVNMQIVNGAEGMIVGGTTGEG--QLMSWDEHIMLI----GHTVNCFG-ASVKVIGNTGSNSTREAIHATEQGFA 151 (359)
Q Consensus 79 ~~l~~li~~li~~Gv~Gl~v~GstGE~--~~LT~~Er~~li----~~~v~~~~-grvpViagvg~~st~~ai~la~~a~~ 151 (359)
+.+.++++.++++|++++.+.=..+.. ..+|.++..+.+ +.+++... ...+++.++.+.. . .+.....+
T Consensus 144 ~~~~~~~~~~~eaG~d~i~i~dp~~~~~~~~is~~~~~e~~~p~~k~i~~~i~~~~~~~~lH~cg~~-~---~~~~~l~~ 219 (306)
T cd00465 144 EFILEYAKTLIEAGAKALQIHEPAFSQINSFLGPKMFKKFALPAYKKVAEYKAAGEVPIVHHSCYDA-A---DLLEEMIQ 219 (306)
T ss_pred HHHHHHHHHHHHhCCCEEEEecccccccCCCCCHHHHHHHHHHHHHHHHHHHhhcCCceEEEECCCH-H---HHHHHHHH
Confidence 346677777888999999987433322 247877766544 33343332 2457777766543 2 33444556
Q ss_pred CCCCEEEE
Q 018253 152 VGMHAALH 159 (359)
Q Consensus 152 ~Gadav~v 159 (359)
.|+|.+.+
T Consensus 220 ~~~d~~~~ 227 (306)
T cd00465 220 LGVDVISF 227 (306)
T ss_pred hCcceEec
Confidence 78877664
No 497
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=69.75 E-value=30 Score=35.09 Aligned_cols=77 Identities=17% Similarity=0.190 Sum_probs=42.8
Q ss_pred HHHHHHHCCCCEEEEccCccCcCCCCH--H----HHHHHHHHHHHhh-CCCcEEEEecCCCCHHHHHHHHHHHHhCCCCE
Q 018253 84 LVNMQIVNGAEGMIVGGTTGEGQLMSW--D----EHIMLIGHTVNCF-GASVKVIGNTGSNSTREAIHATEQGFAVGMHA 156 (359)
Q Consensus 84 li~~li~~Gv~Gl~v~GstGE~~~LT~--~----Er~~li~~~v~~~-~grvpViagvg~~st~~ai~la~~a~~~Gada 156 (359)
....+++.|+|+|.+ |-+.+...-|. . =....+..+.+.+ ..++|||+-=|=.+..+. ..|.++|||+
T Consensus 207 ~a~~l~~aGaD~I~v-G~g~Gs~c~tr~~~g~g~p~ltai~~v~~~~~~~~vpVIAdGGI~~~~Di----~KALalGA~a 281 (404)
T PRK06843 207 AALDLISVGADCLKV-GIGPGSICTTRIVAGVGVPQITAICDVYEVCKNTNICIIADGGIRFSGDV----VKAIAAGADS 281 (404)
T ss_pred HHHHHHHcCCCEEEE-CCCCCcCCcceeecCCCCChHHHHHHHHHHHhhcCCeEEEeCCCCCHHHH----HHHHHcCCCE
Confidence 345577889999986 54333211111 0 0222332333333 236899984333334443 4566699999
Q ss_pred EEEcCCCCC
Q 018253 157 ALHINPYYG 165 (359)
Q Consensus 157 v~v~pP~y~ 165 (359)
||+-.++-.
T Consensus 282 VmvGs~~ag 290 (404)
T PRK06843 282 VMIGNLFAG 290 (404)
T ss_pred EEEcceeee
Confidence 999877653
No 498
>cd02911 arch_FMN Archeal FMN-binding domain. This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown.
Probab=69.73 E-value=29 Score=32.28 Aligned_cols=69 Identities=14% Similarity=0.116 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHCCCCEEEEccCccCcC-CCCHHHHHHHHHHHHHhhCCCcEEEEecCCCCHHHHHHHHHHHHhCCCCEEE
Q 018253 80 AYDDLVNMQIVNGAEGMIVGGTTGEGQ-LMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAAL 158 (359)
Q Consensus 80 ~l~~li~~li~~Gv~Gl~v~GstGE~~-~LT~~Er~~li~~~v~~~~grvpViagvg~~st~~ai~la~~a~~~Gadav~ 158 (359)
....+++.+.+.|+++|-+ +++... .-.+ +.++.+. -++|||+.=+=.+.+++.++.+ .|||+||
T Consensus 153 ~~~~la~~l~~aG~d~ihv--~~~~~g~~ad~----~~I~~i~----~~ipVIgnGgI~s~eda~~~l~----~GaD~Vm 218 (233)
T cd02911 153 DDEELARLIEKAGADIIHV--DAMDPGNHADL----KKIRDIS----TELFIIGNNSVTTIESAKEMFS----YGADMVS 218 (233)
T ss_pred CHHHHHHHHHHhCCCEEEE--CcCCCCCCCcH----HHHHHhc----CCCEEEEECCcCCHHHHHHHHH----cCCCEEE
Confidence 3556777888999998765 333321 2221 2232222 3689886444446666666554 5999999
Q ss_pred EcCC
Q 018253 159 HINP 162 (359)
Q Consensus 159 v~pP 162 (359)
+--+
T Consensus 219 iGR~ 222 (233)
T cd02911 219 VARA 222 (233)
T ss_pred EcCC
Confidence 9877
No 499
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=69.67 E-value=26 Score=36.40 Aligned_cols=144 Identities=10% Similarity=0.022 Sum_probs=77.6
Q ss_pred HHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCCCcEEEEecCCCCHHHHHHHHHHHHhCCCCEEEE-
Q 018253 81 YDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGASVKVIGNTGSNSTREAIHATEQGFAVGMHAALH- 159 (359)
Q Consensus 81 l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~grvpViagvg~~st~~ai~la~~a~~~Gadav~v- 159 (359)
...+++.|+++|++-|++=.+.|. +. --.++++.+.+.. ++++||+|=-+ + .+-++++.++|||++-+
T Consensus 228 ~~~~a~~Lv~aGvd~i~~D~a~~~--~~---~~~~~i~~ik~~~-p~~~v~agnv~-t----~~~a~~l~~aGad~v~vg 296 (479)
T PRK07807 228 VAAKARALLEAGVDVLVVDTAHGH--QE---KMLEALRAVRALD-PGVPIVAGNVV-T----AEGTRDLVEAGADIVKVG 296 (479)
T ss_pred HHHHHHHHHHhCCCEEEEeccCCc--cH---HHHHHHHHHHHHC-CCCeEEeeccC-C----HHHHHHHHHcCCCEEEEC
Confidence 467888999999999998888887 22 2344555555555 36899995332 2 34556666699999862
Q ss_pred -------cCCCCCCCC--HHHHHHHHHHHHhc--CCeEEEeCCCCCCCCCCHHHHHHHhc--CCCeEEEeccCchh----
Q 018253 160 -------INPYYGKTS--LEGLISHFDSVLSM--GPTIIYNVPSRTGQDIPPRVIHTMAQ--SPNLAGVKECVGND---- 222 (359)
Q Consensus 160 -------~pP~y~~~s--~~~l~~yf~~Ia~a--~PiiiYn~P~~tg~~ls~e~l~~La~--~pnivGiK~ss~d~---- 222 (359)
+..-|...+ |=..+.-..+.+.. .|+|- .-|+.-+-+..+.|+- .--++|=-....++
T Consensus 297 ig~gsictt~~~~~~~~p~~~av~~~~~~~~~~~~~via-----~ggi~~~~~~~~al~~ga~~v~~g~~~ag~~Espg~ 371 (479)
T PRK07807 297 VGPGAMCTTRMMTGVGRPQFSAVLECAAAARELGAHVWA-----DGGVRHPRDVALALAAGASNVMIGSWFAGTYESPGD 371 (479)
T ss_pred ccCCcccccccccCCchhHHHHHHHHHHHHHhcCCcEEe-----cCCCCCHHHHHHHHHcCCCeeeccHhhccCccCCCc
Confidence 222332222 22222222222222 46653 2466666666666662 33344333332221
Q ss_pred hHhhhhCCceEEEecCCc
Q 018253 223 RVEHYTGNGIVVWSGNDD 240 (359)
Q Consensus 223 ~l~~~~~~~~~v~~G~d~ 240 (359)
.+..+.+..++.|-|...
T Consensus 372 ~~~~~~g~~~k~yrgmgs 389 (479)
T PRK07807 372 LMRDRDGRPYKESFGMAS 389 (479)
T ss_pred eEeccCCeEEEEeecccc
Confidence 111122455666666543
No 500
>TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family. This model describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4.
Probab=69.65 E-value=51 Score=31.80 Aligned_cols=124 Identities=14% Similarity=0.199 Sum_probs=0.0
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEccCccCcCCCCHHHHHHHHHHHHHhhCC-CcEE---EEecCCCCHH-----------
Q 018253 76 FDLEAYDDLVNMQIVNGAEGMIVGGTTGEGQLMSWDEHIMLIGHTVNCFGA-SVKV---IGNTGSNSTR----------- 140 (359)
Q Consensus 76 ID~~~l~~li~~li~~Gv~Gl~v~GstGE~~~LT~~Er~~li~~~v~~~~g-rvpV---iagvg~~st~----------- 140 (359)
+|...-...+...++.|...+.+=|| .|+.+|=.++.+.+++.+.. .+.| +..+++..-.
T Consensus 79 LDHg~~~e~i~~ai~~GFtSVM~DgS-----~lp~eeNi~~T~~vv~~Ah~~gv~VEaElG~vgg~e~~~~~~~~~~~~T 153 (282)
T TIGR01858 79 LDHHESLDDIRQKVHAGVRSAMIDGS-----HFPFAQNVKLVKEVVDFCHRQDCSVEAELGRLGGVEDDLSVDEEDALYT 153 (282)
T ss_pred CCCCCCHHHHHHHHHcCCCEEeecCC-----CCCHHHHHHHHHHHHHHHHHcCCeEEEEEEecCCccCCCccccchhccC
Q ss_pred HHHHHHHHHHhCCCCEEEEcCCCC---CCCCHHHHHHHHHHHHhc--CCeEEEeCCCCCCCCCCHHHHHHHhcC
Q 018253 141 EAIHATEQGFAVGMHAALHINPYY---GKTSLEGLISHFDSVLSM--GPTIIYNVPSRTGQDIPPRVIHTMAQS 209 (359)
Q Consensus 141 ~ai~la~~a~~~Gadav~v~pP~y---~~~s~~~l~~yf~~Ia~a--~PiiiYn~P~~tg~~ls~e~l~~La~~ 209 (359)
+--+..+.+++.|+|++.+.--.- ++..++==++-.++|.+. .|++++ -|..++.+.+.+..+.
T Consensus 154 ~peea~~Fv~~TgvD~LAvaiGt~HG~yk~~p~Ldf~~L~~I~~~~~iPLVlH-----GgSG~~~e~~~~ai~~ 222 (282)
T TIGR01858 154 DPQEAKEFVEATGVDSLAVAIGTAHGLYKKTPKLDFDRLAEIREVVDVPLVLH-----GASDVPDEDVRRTIEL 222 (282)
T ss_pred CHHHHHHHHHHHCcCEEecccCccccCcCCCCccCHHHHHHHHHHhCCCeEEe-----cCCCCCHHHHHHHHHc
Done!