BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 018254
(359 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3CEG|A Chain A, Crystal Structure Of The Ubc Domain Of Baculoviral Iap
Repeat- Containing Protein 6
pdb|3CEG|B Chain B, Crystal Structure Of The Ubc Domain Of Baculoviral Iap
Repeat- Containing Protein 6
Length = 323
Score = 159 bits (402), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 90/248 (36%), Positives = 136/248 (54%), Gaps = 19/248 (7%)
Query: 16 IEETISFPQFDVVSDVSD--------HHYITSSFTKKNGRDHFPAGSHKKIMQE----WK 63
+ + + F F+ VS+ D +HY + KN D A +++ QE
Sbjct: 34 VXKKLQFDTFEXVSEDEDGKLGFKVNYHYXSQV---KNANDANSAARARRLAQEAVTLST 90
Query: 64 ILEKHLPESIFVRVYENRIDLLRAVIVGTAGTPYHDGLFFFDLAFPADYPNHPPMVHYRS 123
L S+FVR E R+D+ + +I G A TPY +G F FD+ FP DYP+ PP+V+ +
Sbjct: 91 SLPLSSSSSVFVRCDEERLDIXKVLITGPADTPYANGCFEFDVYFPQDYPSSPPLVNLET 150
Query: 124 FG---LRLNPNLYANGRVCLSLLNTWTGKKSEKWNPDESTVLQVLVSIQALVLNEKPYFN 180
G +R NPNLY +G+VCLS+LNTW G+ EKWNP S+ LQVLVS+Q+L+L +PYFN
Sbjct: 151 TGGHSVRFNPNLYNDGKVCLSILNTWHGRPEEKWNPQTSSFLQVLVSVQSLILVAEPYFN 210
Query: 181 EPGHGMWPGRSIWEKKSTAYNEDVFILSCKSMTF-LLRNPPKNFEGFVRSHFRERGHVIL 239
EPG+ G + S Y+ ++ + K +RNP F+ + HF + I
Sbjct: 211 EPGYERSRGTPSGTQSSREYDGNIRQATVKWAXLEQIRNPSPCFKEVIHKHFYLKRVEIX 270
Query: 240 SACKSYLS 247
+ C+ +++
Sbjct: 271 AQCEEWIA 278
>pdb|2AAK|A Chain A, Ubiquitin Conjugating Enzyme From Arabidopsis Thaliana
Length = 152
Score = 76.6 bits (187), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 46/132 (34%), Positives = 69/132 (52%), Gaps = 12/132 (9%)
Query: 54 SHKKIMQEWKILEKHLPESIFVRVYENRIDLLRAVIVGTAGTPYHDGLFFFDLAFPADYP 113
+ K++M+++K L++ P I +N I L AVI G TP+ G F L F DYP
Sbjct: 5 ARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLSLQFSEDYP 64
Query: 114 NHPPMVHYRSFGLRLNPNLYANGRVCLSLLNTWTGKKSEKWNPDESTVLQVLVSIQALVL 173
N PP V + S +PN+YA+G +CL +L +W+P V +L SIQ+L+
Sbjct: 65 NKPPTVRFVS--RMFHPNIYADGSICLDILQN-------QWSP-IYDVAAILTSIQSLLC 114
Query: 174 NEKPYFNEPGHG 185
+ P N P +
Sbjct: 115 DPNP--NSPANS 124
>pdb|1Z3D|A Chain A, Protein Crystal Growth Improvement Leading To The 2.5a
Crystallographic Structure Of Ubiquitin-Conjugating
Enzyme (Ubc-1) From Caenorhabditis Elegans
Length = 157
Score = 76.3 bits (186), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 44/138 (31%), Positives = 72/138 (52%), Gaps = 12/138 (8%)
Query: 49 HFPAGSHKKIMQEWKILEKHLPESIFVRVYENRIDLLRAVIVGTAGTPYHDGLFFFDLAF 108
H S +++M+++K L++ P + E+ I A+I G TP+ DG F L F
Sbjct: 3 HMTTPSRRRLMRDFKKLQEDPPAGVSGAPTEDNILTWEAIIFGPQETPFEDGTFKLSLEF 62
Query: 109 PADYPNHPPMVHYRSFGLRLNPNLYANGRVCLSLLNTWTGKKSEKWNPDESTVLQVLVSI 168
+YPN PP V + S +PN+YA+G +CL +L +W+P V +L SI
Sbjct: 63 TEEYPNKPPTVKFIS--KMFHPNVYADGSICLDILQN-------RWSPTYD-VAAILTSI 112
Query: 169 QALVLNEKPYFNEPGHGM 186
Q+L+ ++P N P + +
Sbjct: 113 QSLL--DEPNPNSPANSL 128
>pdb|1AYZ|A Chain A, Crystal Structure Of The Saccharomyces Cerevisiae
Ubiquitin- Conjugating Enzyme Rad6 (Ubc2) At 2.6a
Resolution
pdb|1AYZ|B Chain B, Crystal Structure Of The Saccharomyces Cerevisiae
Ubiquitin- Conjugating Enzyme Rad6 (Ubc2) At 2.6a
Resolution
pdb|1AYZ|C Chain C, Crystal Structure Of The Saccharomyces Cerevisiae
Ubiquitin- Conjugating Enzyme Rad6 (Ubc2) At 2.6a
Resolution
Length = 169
Score = 74.7 bits (182), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 41/130 (31%), Positives = 67/130 (51%), Gaps = 17/130 (13%)
Query: 54 SHKKIMQEWKILEKHLPESIFVRVYENRIDLLRAVIVGTAGTPYHDGLFFFDLAFPADYP 113
+ +++M+++K +++ P + + + + A+I+G A TPY DG F L F +YP
Sbjct: 5 ARRRLMRDFKRMKEDAPPGVSASPLPDNVMVWNAMIIGPADTPYEDGTFRLLLEFDEEYP 64
Query: 114 NHPPMVHYRSFGLRLNPNLYANGRVCLSLLNTWTGKKSEKWNPDESTVLQVLVSIQALVL 173
N PP H + +PN+YANG +CL +L +W P V +L SIQ+L
Sbjct: 65 NKPP--HVKFLSEMFHPNVYANGEICLDILQN-------RWTP-TYDVASILTSIQSL-- 112
Query: 174 NEKPYFNEPG 183
FN+P
Sbjct: 113 -----FNDPN 117
>pdb|1JAS|A Chain A, Hsubc2b
pdb|2YB6|A Chain A, Native Human Rad6
pdb|2YBF|A Chain A, Complex Of Rad18 (Rad6 Binding Domain) With Rad6b
pdb|2Y4W|A Chain A, Solution Structure Of Human Ubiquitin Conjugating Enzyme
Rad6b
Length = 152
Score = 74.7 bits (182), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 44/132 (33%), Positives = 71/132 (53%), Gaps = 12/132 (9%)
Query: 54 SHKKIMQEWKILEKHLPESIFVRVYENRIDLLRAVIVGTAGTPYHDGLFFFDLAFPADYP 113
+ +++M+++K L++ P + EN I AVI G GTP+ DG F + F +YP
Sbjct: 5 ARRRLMRDFKRLQEDPPVGVSGAPSENNIMQWNAVIFGPEGTPFEDGTFKLVIEFSEEYP 64
Query: 114 NHPPMVHYRSFGLRLNPNLYANGRVCLSLLNTWTGKKSEKWNPDESTVLQVLVSIQALVL 173
N PP V + S +PN+YA+G +CL +L +W+P V +L SIQ+L+
Sbjct: 65 NKPPTVRFLS--KMFHPNVYADGSICLDILQN-------RWSP-TYDVSSILTSIQSLL- 113
Query: 174 NEKPYFNEPGHG 185
++P N P +
Sbjct: 114 -DEPNPNSPANS 124
>pdb|1Q34|A Chain A, Crystal Structures Of Two Ubc (E2) Enzymes Of The
Ubiquitin- Conjugating System In Caenorhabditis Elegans
pdb|1Q34|B Chain B, Crystal Structures Of Two Ubc (E2) Enzymes Of The
Ubiquitin- Conjugating System In Caenorhabditis Elegans
pdb|1Q34|C Chain C, Crystal Structures Of Two Ubc (E2) Enzymes Of The
Ubiquitin- Conjugating System In Caenorhabditis Elegans
Length = 163
Score = 74.7 bits (182), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 43/133 (32%), Positives = 71/133 (53%), Gaps = 12/133 (9%)
Query: 54 SHKKIMQEWKILEKHLPESIFVRVYENRIDLLRAVIVGTAGTPYHDGLFFFDLAFPADYP 113
S +++M+++K L++ P + E+ I A+I G TP+ DG F L F +YP
Sbjct: 5 SRRRLMRDFKKLQEDPPAGVSGAPTEDNILTWEAIIFGPQETPFEDGTFKLSLEFTEEYP 64
Query: 114 NHPPMVHYRSFGLRLNPNLYANGRVCLSLLNTWTGKKSEKWNPDESTVLQVLVSIQALVL 173
N PP V + S +PN+YA+G +CL +L +W+P V +L SIQ+L+
Sbjct: 65 NKPPTVKFIS--KMFHPNVYADGSICLDILQN-------RWSP-TYDVAAILTSIQSLL- 113
Query: 174 NEKPYFNEPGHGM 186
++P N P + +
Sbjct: 114 -DEPNPNSPANSL 125
>pdb|1QCQ|A Chain A, Ubiquitin Conjugating Enzyme
Length = 148
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 43/126 (34%), Positives = 69/126 (54%), Gaps = 12/126 (9%)
Query: 53 GSHKKIMQEWKILEKHLPESIFVRVYENRIDLLRAVIVGTAGTPYHDGLFFFDLAFPADY 112
S K+I +E LE+ P S + + +A I+G A +PY G+FF + FP DY
Sbjct: 2 SSSKRIAKELSDLERDPPTSCSAGPVGDDLYHWQASIMGPADSPYAGGVFFLSIHFPTDY 61
Query: 113 PNHPPMVHYRSFGLRL-NPNLYANGRVCLSLLNTWTGKKSEKWNPDESTVLQVLVSIQAL 171
P PP + SF ++ +PN+ ANG +CL +L ++W+P T+ +VL+SI +L
Sbjct: 62 PFKPPKI---SFTTKIYHPNINANGNICLDILK-------DQWSP-ALTLSKVLLSICSL 110
Query: 172 VLNEKP 177
+ + P
Sbjct: 111 LTDANP 116
>pdb|2UCZ|A Chain A, Ubiquitin Conjugating Enzyme (Ubc7) From Saccharomyces
Cerevisiae
Length = 165
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 42/126 (33%), Positives = 70/126 (55%), Gaps = 10/126 (7%)
Query: 54 SHKKIMQEWKILEKHLPESIFV-RVYENRIDLLRAVIVGTAGTPYHDGLFFFDLAFPADY 112
+ K++++E + L K P I EN I + +I G TPY DG+F L FP DY
Sbjct: 5 AQKRLLKELQQLIKDSPPGIVAGPKSENNIFIWDCLIQGPPDTPYADGVFNAKLEFPKDY 64
Query: 113 PNHPPMVHYRSFGLRLNPNLYANGRVCLSLLNTWTGKKS------EKWNPDESTVLQVLV 166
P PP + + L+PN+Y NG VC+S+L++ + E+W+P +S V ++L+
Sbjct: 65 PLSPPKLTFTPS--ILHPNIYPNGEVCISILHSPGDDPNMYELAEERWSPVQS-VEKILL 121
Query: 167 SIQALV 172
S+ +++
Sbjct: 122 SVMSML 127
>pdb|4II2|C Chain C, Crystal Structure Of Ubiquitin Activating Enzyme 1 (uba1)
In Complex With The Ub E2 Ubc4, Ubiquitin, And Atp/mg
Length = 163
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 42/123 (34%), Positives = 67/123 (54%), Gaps = 12/123 (9%)
Query: 56 KKIMQEWKILEKHLPESIFVRVYENRIDLLRAVIVGTAGTPYHDGLFFFDLAFPADYPNH 115
K+I +E L K P S + + +A I+G A +PY G+FF + FP DYP
Sbjct: 4 KRINRELADLGKDPPSSSSAGPVGDDLFHWQATIMGPADSPYAGGVFFLSIHFPTDYPFK 63
Query: 116 PPMVHYRSFGLRL-NPNLYANGRVCLSLLNTWTGKKSEKWNPDESTVLQVLVSIQALVLN 174
PP V+ F R+ +PN+ +NG +CL +L ++W+P T+ +VL+SI +L+ +
Sbjct: 64 PPKVN---FTTRIYHPNINSNGSICLDILR-------DQWSP-ALTISKVLLSISSLLTD 112
Query: 175 EKP 177
P
Sbjct: 113 PNP 115
>pdb|2OXQ|A Chain A, Structure Of The Ubch5 :chip U-Box Complex
pdb|2OXQ|B Chain B, Structure Of The Ubch5 :chip U-Box Complex
Length = 152
Score = 65.5 bits (158), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 39/123 (31%), Positives = 68/123 (55%), Gaps = 12/123 (9%)
Query: 56 KKIMQEWKILEKHLPESIFVRVYENRIDLLRAVIVGTAGTPYHDGLFFFDLAFPADYPNH 115
K+I +E + L++ P + + +A I+G + +PY G+FF + FP DYP
Sbjct: 9 KRIQKELQDLQRDPPAQCSAGPVGDDLFHWQATIMGPSDSPYQGGVFFLTIHFPTDYPFK 68
Query: 116 PPMVHYRSFGLRL-NPNLYANGRVCLSLLNTWTGKKSEKWNPDESTVLQVLVSIQALVLN 174
PP V +F ++ +PN+ +NG +CL +L + +W+P TV +VL+SI +L+ +
Sbjct: 69 PPKV---AFTTKIYHPNINSNGSICLDILRS-------QWSP-ALTVSKVLLSICSLLCD 117
Query: 175 EKP 177
P
Sbjct: 118 PNP 120
>pdb|1Z2U|A Chain A, The 1.1a Crystallographic Structure Of Ubiquitin-
Conjugating Enzyme (Ubc-2) From Caenorhabditis Elegans:
Functional And Evolutionary Significance
Length = 150
Score = 65.1 bits (157), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 42/129 (32%), Positives = 69/129 (53%), Gaps = 15/129 (11%)
Query: 53 GSH---KKIMQEWKILEKHLPESIFVRVYENRIDLLRAVIVGTAGTPYHDGLFFFDLAFP 109
GSH K+I +E + L + P + + +A I+G +PY G+FF + FP
Sbjct: 1 GSHMALKRIQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPESPYQGGVFFLTIHFP 60
Query: 110 ADYPNHPPMVHYRSFGLRL-NPNLYANGRVCLSLLNTWTGKKSEKWNPDESTVLQVLVSI 168
DYP PP V +F R+ +PN+ +NG +CL +L + +W+P T+ +VL+SI
Sbjct: 61 TDYPFKPPKV---AFTTRIYHPNINSNGSICLDILRS-------QWSP-ALTISKVLLSI 109
Query: 169 QALVLNEKP 177
+L+ + P
Sbjct: 110 CSLLCDPNP 118
>pdb|2AYV|A Chain A, Crystal Structure Of A Putative Ubiquitin-Conjugating
Enzyme E2 From Toxoplasma Gondii
Length = 166
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 68/125 (54%), Gaps = 10/125 (8%)
Query: 53 GSHKKIMQEWKILEKHLPESIFVRVYENRIDLLRAVIVGTAGTPYHDGLFFFDLAFPADY 112
G+ K+I +E L K P + + + +A I+G +PY G+FF ++ FP+DY
Sbjct: 21 GALKRINKELNDLSKDPPTNCSAGPVGDDMFHWQATIMGPEDSPYSGGVFFLNIHFPSDY 80
Query: 113 PNHPPMVHYRSFGLRLNPNLYANGRVCLSLLNTWTGKKSEKWNPDESTVLQVLVSIQALV 172
P PP V++ + +PN+ + G +CL +L ++W+P T+ +VL+SI +L+
Sbjct: 81 PFKPPKVNFTT--KIYHPNINSQGAICLDIL-------KDQWSP-ALTISKVLLSISSLL 130
Query: 173 LNEKP 177
+ P
Sbjct: 131 TDPNP 135
>pdb|2ESK|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b, Wild-Type
Length = 149
Score = 63.2 bits (152), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 40/127 (31%), Positives = 67/127 (52%), Gaps = 12/127 (9%)
Query: 52 AGSHKKIMQEWKILEKHLPESIFVRVYENRIDLLRAVIVGTAGTPYHDGLFFFDLAFPAD 111
A + K+I +E L + P + + +A I+G +PY G+FF + FP D
Sbjct: 2 AMALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTD 61
Query: 112 YPNHPPMVHYRSFGLRL-NPNLYANGRVCLSLLNTWTGKKSEKWNPDESTVLQVLVSIQA 170
YP PP V +F R+ +PN+ +NG +CL +L + +W+P T+ +VL+SI +
Sbjct: 62 YPFKPPKV---AFTTRIYHPNINSNGSICLDILRS-------QWSP-ALTISKVLLSICS 110
Query: 171 LVLNEKP 177
L+ + P
Sbjct: 111 LLCDPNP 117
>pdb|3TGD|A Chain A, Crystal Structure Of The Human Ubiquitin-Conjugating
Enzyme (E2) Ubch5b
Length = 152
Score = 62.8 bits (151), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 39/123 (31%), Positives = 65/123 (52%), Gaps = 12/123 (9%)
Query: 56 KKIMQEWKILEKHLPESIFVRVYENRIDLLRAVIVGTAGTPYHDGLFFFDLAFPADYPNH 115
K+I +E L + P + + +A I+G +PY G+FF + FP DYP
Sbjct: 9 KRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFK 68
Query: 116 PPMVHYRSFGLRL-NPNLYANGRVCLSLLNTWTGKKSEKWNPDESTVLQVLVSIQALVLN 174
PP V +F R+ +PN+ +NG +CL +L + +W+P T+ +VL+SI +L+ +
Sbjct: 69 PPKV---AFTTRIYHPNINSNGSICLDILRS-------QWSP-ALTISKVLLSICSLLCD 117
Query: 175 EKP 177
P
Sbjct: 118 PNP 120
>pdb|3EB6|B Chain B, Structure Of The Ciap2 Ring Domain Bound To Ubch5b
Length = 149
Score = 62.8 bits (151), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 39/123 (31%), Positives = 65/123 (52%), Gaps = 12/123 (9%)
Query: 56 KKIMQEWKILEKHLPESIFVRVYENRIDLLRAVIVGTAGTPYHDGLFFFDLAFPADYPNH 115
K+I +E L + P + + +A I+G +PY G+FF + FP DYP
Sbjct: 6 KRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFK 65
Query: 116 PPMVHYRSFGLRL-NPNLYANGRVCLSLLNTWTGKKSEKWNPDESTVLQVLVSIQALVLN 174
PP V +F R+ +PN+ +NG +CL +L + +W+P T+ +VL+SI +L+ +
Sbjct: 66 PPKV---AFTTRIYHPNINSNGSICLDILRS-------QWSP-ALTISKVLLSICSLLCD 114
Query: 175 EKP 177
P
Sbjct: 115 PNP 117
>pdb|2C4O|B Chain B, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2C4O|C Chain C, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2C4O|D Chain D, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2CLW|B Chain B, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2CLW|C Chain C, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2CLW|D Chain D, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
Length = 165
Score = 62.8 bits (151), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 42/130 (32%), Positives = 68/130 (52%), Gaps = 14/130 (10%)
Query: 51 PAGSH--KKIMQEWKILEKHLPESIFVRVYENRIDLLRAVIVGTAGTPYHDGLFFFDLAF 108
P GS K+I +E L + P + + +A I+G +PY G+FF + F
Sbjct: 15 PRGSMALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHF 74
Query: 109 PADYPNHPPMVHYRSFGLRL-NPNLYANGRVCLSLLNTWTGKKSEKWNPDESTVLQVLVS 167
P DYP PP V +F R+ +PN+ +NG +CL +L + +W+P T+ +VL+S
Sbjct: 75 PTDYPFKPPKV---AFTTRIYHPNINSNGSICLDILRS-------QWSP-ALTISKVLLS 123
Query: 168 IQALVLNEKP 177
I +L+ + P
Sbjct: 124 ICSLLCDPNP 133
>pdb|2CYX|A Chain A, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G2
(Ube2g2UBC7)
pdb|2CYX|B Chain B, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G2
(Ube2g2UBC7)
pdb|2CYX|C Chain C, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G2
(Ube2g2UBC7)
Length = 170
Score = 62.8 bits (151), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 47/152 (30%), Positives = 79/152 (51%), Gaps = 13/152 (8%)
Query: 46 GRDHFPAGSH-KKIMQEWKILEKHLPESIFV-RVYENRIDLLRAVIVGTAGTPYHDGLFF 103
G F AG+ K++M E+K L + PE I + E A+I+G T + G+F
Sbjct: 1 GGSEFMAGTALKRLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFP 60
Query: 104 FDLAFPADYPNHPPMVHYRSFGLRLNPNLYANGRVCLSLLNTWTG------KKSEKWNPD 157
L+FP DYP PP + + +PN+Y +GRVC+S+L+ +E+W+P
Sbjct: 61 AILSFPLDYPLSPPKMRFTC--EMFHPNIYPDGRVCISILHAPGDDPMGYESSAERWSPV 118
Query: 158 ESTVLQVLVSIQALVL--NEKPYFNEPGHGMW 187
+S V ++L+S+ +++ N++ N MW
Sbjct: 119 QS-VEKILLSVVSMLAEPNDESGANVDASKMW 149
>pdb|1X23|A Chain A, Crystal Structure Of Ubch5c
pdb|1X23|B Chain B, Crystal Structure Of Ubch5c
pdb|1X23|C Chain C, Crystal Structure Of Ubch5c
pdb|1X23|D Chain D, Crystal Structure Of Ubch5c
Length = 155
Score = 62.4 bits (150), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 39/123 (31%), Positives = 65/123 (52%), Gaps = 12/123 (9%)
Query: 56 KKIMQEWKILEKHLPESIFVRVYENRIDLLRAVIVGTAGTPYHDGLFFFDLAFPADYPNH 115
K+I +E L + P + + +A I+G +PY G+FF + FP DYP
Sbjct: 12 KRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFK 71
Query: 116 PPMVHYRSFGLRL-NPNLYANGRVCLSLLNTWTGKKSEKWNPDESTVLQVLVSIQALVLN 174
PP V +F R+ +PN+ +NG +CL +L + +W+P T+ +VL+SI +L+ +
Sbjct: 72 PPKV---AFTTRIYHPNINSNGSICLDILRS-------QWSP-ALTISKVLLSICSLLCD 120
Query: 175 EKP 177
P
Sbjct: 121 PNP 123
>pdb|3RPG|A Chain A, Bmi1RING1B-Ubch5c Complex Structure
Length = 149
Score = 62.4 bits (150), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 39/123 (31%), Positives = 65/123 (52%), Gaps = 12/123 (9%)
Query: 56 KKIMQEWKILEKHLPESIFVRVYENRIDLLRAVIVGTAGTPYHDGLFFFDLAFPADYPNH 115
K+I +E L + P + + +A I+G +PY G+FF + FP DYP
Sbjct: 6 KRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFK 65
Query: 116 PPMVHYRSFGLRL-NPNLYANGRVCLSLLNTWTGKKSEKWNPDESTVLQVLVSIQALVLN 174
PP V +F R+ +PN+ +NG +CL +L + +W+P T+ +VL+SI +L+ +
Sbjct: 66 PPKV---AFTTRIYHPNINSNGSICLDILRS-------QWSP-ALTISKVLLSICSLLCD 114
Query: 175 EKP 177
P
Sbjct: 115 PNP 117
>pdb|2ESQ|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Mutant
Ser94gly
Length = 149
Score = 62.4 bits (150), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 40/127 (31%), Positives = 66/127 (51%), Gaps = 12/127 (9%)
Query: 52 AGSHKKIMQEWKILEKHLPESIFVRVYENRIDLLRAVIVGTAGTPYHDGLFFFDLAFPAD 111
A + K+I +E L + P + + +A I+G +PY G+FF + FP D
Sbjct: 2 AMALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTD 61
Query: 112 YPNHPPMVHYRSFGLRL-NPNLYANGRVCLSLLNTWTGKKSEKWNPDESTVLQVLVSIQA 170
YP PP V +F R+ +PN+ +NG +CL +L + +W P T+ +VL+SI +
Sbjct: 62 YPFKPPKV---AFTTRIYHPNINSNGSICLDILRS-------QWGP-ALTISKVLLSICS 110
Query: 171 LVLNEKP 177
L+ + P
Sbjct: 111 LLCDPNP 117
>pdb|2FUH|A Chain A, Solution Structure Of The Ubch5cUB NON-Covalent Complex
Length = 146
Score = 62.4 bits (150), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 39/123 (31%), Positives = 65/123 (52%), Gaps = 12/123 (9%)
Query: 56 KKIMQEWKILEKHLPESIFVRVYENRIDLLRAVIVGTAGTPYHDGLFFFDLAFPADYPNH 115
K+I +E L + P + + +A I+G +PY G+FF + FP DYP
Sbjct: 3 KRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFK 62
Query: 116 PPMVHYRSFGLRL-NPNLYANGRVCLSLLNTWTGKKSEKWNPDESTVLQVLVSIQALVLN 174
PP V +F R+ +PN+ +NG +CL +L + +W+P T+ +VL+SI +L+ +
Sbjct: 63 PPKV---AFTTRIYHPNINSNGSICLDILRS-------QWSP-ALTISKVLLSICSLLCD 111
Query: 175 EKP 177
P
Sbjct: 112 PNP 114
>pdb|3L1Z|A Chain A, Crystal Structure Of The U-Box Domain Of Human E4b
Ubiquitin Ligase In Complex With Ubch5c E2 Ubiquitin
Conjugating Enzyme
Length = 157
Score = 62.4 bits (150), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 39/123 (31%), Positives = 65/123 (52%), Gaps = 12/123 (9%)
Query: 56 KKIMQEWKILEKHLPESIFVRVYENRIDLLRAVIVGTAGTPYHDGLFFFDLAFPADYPNH 115
K+I +E L + P + + +A I+G +PY G+FF + FP DYP
Sbjct: 14 KRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFK 73
Query: 116 PPMVHYRSFGLRL-NPNLYANGRVCLSLLNTWTGKKSEKWNPDESTVLQVLVSIQALVLN 174
PP V +F R+ +PN+ +NG +CL +L + +W+P T+ +VL+SI +L+ +
Sbjct: 74 PPKV---AFTTRIYHPNINSNGSICLDILRS-------QWSP-ALTISKVLLSICSLLCD 122
Query: 175 EKP 177
P
Sbjct: 123 PNP 125
>pdb|3L1Y|A Chain A, Crystal Structure Of Human Ubc4 E2 Conjugating Enzyme
Length = 157
Score = 62.4 bits (150), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 39/123 (31%), Positives = 65/123 (52%), Gaps = 12/123 (9%)
Query: 56 KKIMQEWKILEKHLPESIFVRVYENRIDLLRAVIVGTAGTPYHDGLFFFDLAFPADYPNH 115
K+I +E L + P + + +A I+G +PY G+FF + FP DYP
Sbjct: 14 KRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFK 73
Query: 116 PPMVHYRSFGLRL-NPNLYANGRVCLSLLNTWTGKKSEKWNPDESTVLQVLVSIQALVLN 174
PP V +F R+ +PN+ +NG +CL +L + +W+P T+ +VL+SI +L+ +
Sbjct: 74 PPKV---AFTTRIYHPNINSNGSICLDILRS-------QWSP-ALTISKVLLSICSLLCD 122
Query: 175 EKP 177
P
Sbjct: 123 PNP 125
>pdb|1UR6|A Chain A, Nmr Based Structural Model Of The Ubch5b-Cnot4 Complex
pdb|1W4U|A Chain A, Nmr Solution Structure Of The Ubiquitin Conjugating Enzyme
Ubch5b
pdb|4A49|B Chain B, Structure Of Phosphotyr371-C-Cbl-Ubch5b Complex
pdb|4A4B|C Chain C, Structure Of Modified Phosphotyr371-C-Cbl-Ubch5b-Zap-70
Complex
pdb|4A4C|C Chain C, Structure Of Phosphotyr371-C-Cbl-Ubch5b-Zap-70 Complex
Length = 147
Score = 62.4 bits (150), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 39/123 (31%), Positives = 65/123 (52%), Gaps = 12/123 (9%)
Query: 56 KKIMQEWKILEKHLPESIFVRVYENRIDLLRAVIVGTAGTPYHDGLFFFDLAFPADYPNH 115
K+I +E L + P + + +A I+G +PY G+FF + FP DYP
Sbjct: 4 KRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFK 63
Query: 116 PPMVHYRSFGLRL-NPNLYANGRVCLSLLNTWTGKKSEKWNPDESTVLQVLVSIQALVLN 174
PP V +F R+ +PN+ +NG +CL +L + +W+P T+ +VL+SI +L+ +
Sbjct: 64 PPKV---AFTTRIYHPNINSNGSICLDILRS-------QWSP-ALTISKVLLSICSLLCD 112
Query: 175 EKP 177
P
Sbjct: 113 PNP 115
>pdb|3FSH|A Chain A, Crystal Structure Of The Ubiquitin Conjugating Enzyme
Ube2g2 Bound To The G2br Domain Of Ubiquitin Ligase Gp78
pdb|3FSH|B Chain B, Crystal Structure Of The Ubiquitin Conjugating Enzyme
Ube2g2 Bound To The G2br Domain Of Ubiquitin Ligase Gp78
Length = 168
Score = 62.0 bits (149), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 44/148 (29%), Positives = 76/148 (51%), Gaps = 12/148 (8%)
Query: 49 HFPAGSHKKIMQEWKILEKHLPESIFV-RVYENRIDLLRAVIVGTAGTPYHDGLFFFDLA 107
H + K++M E+K L + PE I + E A+I+G T + G+F L+
Sbjct: 3 HMAGTALKRLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILS 62
Query: 108 FPADYPNHPPMVHYRSFGLRLNPNLYANGRVCLSLLNTWTG------KKSEKWNPDESTV 161
FP DYP PP + + +PN+Y +GRVC+S+L+ +E+W+P +S V
Sbjct: 63 FPLDYPLSPPKMRFTC--EMFHPNIYPDGRVCISILHAPGDDPMGYESSAERWSPVQS-V 119
Query: 162 LQVLVSIQALVL--NEKPYFNEPGHGMW 187
++L+S+ +++ N++ N MW
Sbjct: 120 EKILLSVVSMLAEPNDESGANVDASKMW 147
>pdb|2ESP|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Mutant
Ile88ala
Length = 149
Score = 62.0 bits (149), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 40/127 (31%), Positives = 66/127 (51%), Gaps = 12/127 (9%)
Query: 52 AGSHKKIMQEWKILEKHLPESIFVRVYENRIDLLRAVIVGTAGTPYHDGLFFFDLAFPAD 111
A + K+I +E L + P + + +A I+G +PY G+FF + FP D
Sbjct: 2 AMALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTD 61
Query: 112 YPNHPPMVHYRSFGLRL-NPNLYANGRVCLSLLNTWTGKKSEKWNPDESTVLQVLVSIQA 170
YP PP V +F R+ +PN+ +NG +CL L + +W+P T+ +VL+SI +
Sbjct: 62 YPFKPPKV---AFTTRIYHPNINSNGSICLDALRS-------QWSP-ALTISKVLLSICS 110
Query: 171 LVLNEKP 177
L+ + P
Sbjct: 111 LLCDPNP 117
>pdb|2KLY|A Chain A, Solution Structure Of Human Ubiquitin Conjugating Enzyme
Ube2g2
Length = 167
Score = 62.0 bits (149), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 44/148 (29%), Positives = 76/148 (51%), Gaps = 12/148 (8%)
Query: 49 HFPAGSHKKIMQEWKILEKHLPESIFV-RVYENRIDLLRAVIVGTAGTPYHDGLFFFDLA 107
H + K++M E+K L + PE I + E A+I+G T + G+F L+
Sbjct: 2 HMAGTALKRLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILS 61
Query: 108 FPADYPNHPPMVHYRSFGLRLNPNLYANGRVCLSLLNTWTG------KKSEKWNPDESTV 161
FP DYP PP + + +PN+Y +GRVC+S+L+ +E+W+P +S V
Sbjct: 62 FPLDYPLSPPKMRFTC--EMFHPNIYPDGRVCISILHAPGDDPMGYESSAERWSPVQS-V 118
Query: 162 LQVLVSIQALVL--NEKPYFNEPGHGMW 187
++L+S+ +++ N++ N MW
Sbjct: 119 EKILLSVVSMLAEPNDESGANVDASKMW 146
>pdb|2ESO|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Mutant
Ile37ala
Length = 149
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 39/127 (30%), Positives = 66/127 (51%), Gaps = 12/127 (9%)
Query: 52 AGSHKKIMQEWKILEKHLPESIFVRVYENRIDLLRAVIVGTAGTPYHDGLFFFDLAFPAD 111
A + K+I +E L + P + + +A +G +PY G+FF + FP D
Sbjct: 2 AMALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATAMGPNDSPYQGGVFFLTIHFPTD 61
Query: 112 YPNHPPMVHYRSFGLRL-NPNLYANGRVCLSLLNTWTGKKSEKWNPDESTVLQVLVSIQA 170
YP PP V +F R+ +PN+ +NG +CL +L + +W+P T+ +VL+SI +
Sbjct: 62 YPFKPPKV---AFTTRIYHPNINSNGSICLDILRS-------QWSP-ALTISKVLLSICS 110
Query: 171 LVLNEKP 177
L+ + P
Sbjct: 111 LLCDPNP 117
>pdb|3H8K|A Chain A, Crystal Structure Of Ube2g2 Complxed With The G2br Domain
Of Gp78 At 1.8-A Resolution
Length = 164
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 43/141 (30%), Positives = 74/141 (52%), Gaps = 12/141 (8%)
Query: 56 KKIMQEWKILEKHLPESIFV-RVYENRIDLLRAVIVGTAGTPYHDGLFFFDLAFPADYPN 114
K++M E+K L + PE I + E A+I+G T + G+F L+FP DYP
Sbjct: 6 KRLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDYPL 65
Query: 115 HPPMVHYRSFGLRLNPNLYANGRVCLSLLNTWTG------KKSEKWNPDESTVLQVLVSI 168
PP + + +PN+Y +GRVC+S+L+ +E+W+P +S V ++L+S+
Sbjct: 66 SPPKMRFTC--EMFHPNIYPDGRVCISILHAPGDDPMGYESSAERWSPVQS-VEKILLSV 122
Query: 169 QALVL--NEKPYFNEPGHGMW 187
+++ N++ N MW
Sbjct: 123 VSMLAEPNDESGANVDASKMW 143
>pdb|4GPR|A Chain A, Crystal Structure Of Ehubc5, A Ubiquitin Conjugating
Enzyme From Entamoeba Histolytica
Length = 151
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 65/126 (51%), Gaps = 10/126 (7%)
Query: 52 AGSHKKIMQEWKILEKHLPESIFVRVYENRIDLLRAVIVGTAGTPYHDGLFFFDLAFPAD 111
A + ++I +E + +++ P + + I A I G +PY GLFF D+ FP D
Sbjct: 3 AMAMRRIQKELREIQQDPPCNCSAGPVGDDIFHWTATITGPDDSPYQGGLFFLDVHFPVD 62
Query: 112 YPNHPPMVHYRSFGLRLNPNLYANGRVCLSLLNTWTGKKSEKWNPDESTVLQVLVSIQAL 171
YP P V + + +PN+ NG +CL +L ++W+P T+ +VL+SI +L
Sbjct: 63 YPFKAPRVTFMT--KVYHPNINKNGVICLDILK-------DQWSP-ALTLSRVLLSISSL 112
Query: 172 VLNEKP 177
+ + P
Sbjct: 113 LTDPNP 118
>pdb|2YHO|B Chain B, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|D Chain D, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|F Chain F, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|H Chain H, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
Length = 149
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 38/127 (29%), Positives = 67/127 (52%), Gaps = 12/127 (9%)
Query: 52 AGSHKKIMQEWKILEKHLPESIFVRVYENRIDLLRAVIVGTAGTPYHDGLFFFDLAFPAD 111
A + K+I +E L++ P + + +A I+G + Y G+FF + FP D
Sbjct: 2 AMALKRIQKELSDLQRDPPAHCSAGPVGDDLFHWQATIMGPPDSAYQGGVFFLTVHFPTD 61
Query: 112 YPNHPPMVHYRSFGLRL-NPNLYANGRVCLSLLNTWTGKKSEKWNPDESTVLQVLVSIQA 170
YP PP + +F ++ +PN+ +NG +CL +L + +W+P TV +VL+SI +
Sbjct: 62 YPFKPPKI---AFTTKIYHPNINSNGSICLDILRS-------QWSP-ALTVSKVLLSICS 110
Query: 171 LVLNEKP 177
L+ + P
Sbjct: 111 LLCDPNP 117
>pdb|3OJ4|A Chain A, Crystal Structure Of The A20 Znf4, Ubiquitin And Ubch5a
Complex
pdb|3OJ4|D Chain D, Crystal Structure Of The A20 Znf4, Ubiquitin And Ubch5a
Complex
pdb|3PTF|A Chain A, X-Ray Structure Of The Non-Covalent Complex Between Ubch5a
And Ubiquitin
pdb|3PTF|B Chain B, X-Ray Structure Of The Non-Covalent Complex Between Ubch5a
And Ubiquitin
Length = 153
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 40/132 (30%), Positives = 68/132 (51%), Gaps = 18/132 (13%)
Query: 53 GSH------KKIMQEWKILEKHLPESIFVRVYENRIDLLRAVIVGTAGTPYHDGLFFFDL 106
GSH K+I +E L++ P + + +A I+G + Y G+FF +
Sbjct: 1 GSHMLEMALKRIQKELSDLQRDPPAHCSAGPVGDDLFHWQATIMGPPDSAYQGGVFFLTV 60
Query: 107 AFPADYPNHPPMVHYRSFGLRL-NPNLYANGRVCLSLLNTWTGKKSEKWNPDESTVLQVL 165
FP DYP PP + +F ++ +PN+ +NG +CL +L + +W+P TV +VL
Sbjct: 61 HFPTDYPFKPPKI---AFTTKIYHPNINSNGSICLDILRS-------QWSP-ALTVSKVL 109
Query: 166 VSIQALVLNEKP 177
+SI +L+ + P
Sbjct: 110 LSICSLLCDPNP 121
>pdb|2C4P|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5a
pdb|2C4P|B Chain B, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5a
Length = 165
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 40/130 (30%), Positives = 68/130 (52%), Gaps = 14/130 (10%)
Query: 51 PAGSH--KKIMQEWKILEKHLPESIFVRVYENRIDLLRAVIVGTAGTPYHDGLFFFDLAF 108
P GS K+I +E L++ P + + +A I+G + Y G+FF + F
Sbjct: 15 PRGSMALKRIQKELSDLQRDPPAHCSAGPVGDDLFHWQATIMGPPDSAYQGGVFFLTVHF 74
Query: 109 PADYPNHPPMVHYRSFGLRL-NPNLYANGRVCLSLLNTWTGKKSEKWNPDESTVLQVLVS 167
P DYP PP + +F ++ +PN+ +NG +CL +L + +W+P TV +VL+S
Sbjct: 75 PTDYPFKPPKI---AFTTKIYHPNINSNGSICLDILRS-------QWSP-ALTVSKVLLS 123
Query: 168 IQALVLNEKP 177
I +L+ + P
Sbjct: 124 ICSLLCDPNP 133
>pdb|4DDG|A Chain A, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|B Chain B, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|C Chain C, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|J Chain J, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|K Chain K, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|L Chain L, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDI|A Chain A, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDI|B Chain B, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDI|C Chain C, Crystal Structure Of Human Otub1UBCH5B~UBUB
Length = 399
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 39/127 (30%), Positives = 66/127 (51%), Gaps = 12/127 (9%)
Query: 52 AGSHKKIMQEWKILEKHLPESIFVRVYENRIDLLRAVIVGTAGTPYHDGLFFFDLAFPAD 111
A + K+I +E L + P + + +A I+G +PY G+FF + FP D
Sbjct: 2 AMALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTD 61
Query: 112 YPNHPPMVHYRSFGLRL-NPNLYANGRVCLSLLNTWTGKKSEKWNPDESTVLQVLVSIQA 170
YP PP V +F R+ +PN+ +NG + L +L + +W+P T+ +VL+SI +
Sbjct: 62 YPFKPPKV---AFTTRIYHPNINSNGSISLDILRS-------QWSP-ALTISKVLLSICS 110
Query: 171 LVLNEKP 177
L+ + P
Sbjct: 111 LLCDPNP 117
>pdb|1YH2|A Chain A, Ubiquitin-Conjugating Enzyme Hspc150
Length = 169
Score = 58.9 bits (141), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 58/121 (47%), Gaps = 6/121 (4%)
Query: 57 KIMQEWKILEKHLPESIFVRVYENRIDLLRAVIVGTAGTPYHDGLFFFDLAFPADYPNHP 116
++ +E +L P I ++++D LRA I+G A TPY G+F ++ P YP P
Sbjct: 8 RLKRELHMLATEPPPGITCWQDKDQMDDLRAQILGGANTPYEKGVFKLEVIIPERYPFEP 67
Query: 117 PMVHYRSFGLRLNPNLYANGRVCLSLLNTWTGKKSEKWNPDESTVLQVLVSIQALVLNEK 176
P + + +PN+ + GR+CL +L W P + VL SIQ L+
Sbjct: 68 PQIRF--LTPIYHPNIDSAGRICLDVLKL---PPKGAWRP-SLNIATVLTSIQLLMSEPN 121
Query: 177 P 177
P
Sbjct: 122 P 122
>pdb|3A33|A Chain A, Ubch5b~ubiquitin Conjugate
Length = 150
Score = 58.5 bits (140), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 41/129 (31%), Positives = 67/129 (51%), Gaps = 14/129 (10%)
Query: 52 AGSH--KKIMQEWKILEKHLPESIFVRVYENRIDLLRAVIVGTAGTPYHDGLFFFDLAFP 109
AGS K+I +E L + P + + +A I+G +PY G+FF + FP
Sbjct: 1 AGSMALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFP 60
Query: 110 ADYPNHPPMVHYRSFGLRL-NPNLYANGRVCLSLLNTWTGKKSEKWNPDESTVLQVLVSI 168
DYP PP V +F R+ +PN+ +NG + L +L + +W+P T+ +VL+SI
Sbjct: 61 TDYPFKPPKV---AFTTRIYHPNINSNGSISLDILRS-------QWSP-ALTISKVLLSI 109
Query: 169 QALVLNEKP 177
+L+ + P
Sbjct: 110 CSLLCDPNP 118
>pdb|1KPS|A Chain A, Structural Basis For E2-Mediated Sumo Conjugation Revealed
By A Complex Between Ubiquitin Conjugating Enzyme Ubc9
And Rangap1
pdb|1KPS|C Chain C, Structural Basis For E2-Mediated Sumo Conjugation Revealed
By A Complex Between Ubiquitin Conjugating Enzyme Ubc9
And Rangap1
Length = 159
Score = 58.5 bits (140), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 51/99 (51%), Gaps = 10/99 (10%)
Query: 87 AVIVGTAGTPYHDGLFFFDLAFPADYPNHPPMVHYRSFGLRLNPNLYANGRVCLSLLNTW 146
I G GTP+ GLF + F DYP+ PP + +PN+Y +G VCLS+L
Sbjct: 44 CAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEP--PLFHPNVYPSGTVCLSIL--- 98
Query: 147 TGKKSEKWNPDESTVLQVLVSIQALVLNEKPYFNEPGHG 185
++ + W P T+ Q+L+ IQ L LNE P +P
Sbjct: 99 --EEDKDWRP-AITIKQILLGIQEL-LNE-PNIQDPAQA 132
>pdb|1Z5S|A Chain A, Crystal Structure Of A Complex Between Ubc9, Sumo-1,
Rangap1 And Nup358RANBP2
pdb|2PX9|B Chain B, The Intrinsic Affinity Between E2 And The Cys Domain Of E1
In Ubiquitin-Like Modifications
pdb|2VRR|A Chain A, Structure Of Sumo Modified Ubc9
pdb|2XWU|A Chain A, Crystal Structure Of Importin 13 - Ubc9 Complex
pdb|3UIN|A Chain A, Complex Between Human Rangap1-Sumo2, Ubc9 And The Ir1
Domain From Ranbp2
Length = 158
Score = 58.5 bits (140), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 51/99 (51%), Gaps = 10/99 (10%)
Query: 87 AVIVGTAGTPYHDGLFFFDLAFPADYPNHPPMVHYRSFGLRLNPNLYANGRVCLSLLNTW 146
I G GTP+ GLF + F DYP+ PP + +PN+Y +G VCLS+L
Sbjct: 43 CAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEP--PLFHPNVYPSGTVCLSIL--- 97
Query: 147 TGKKSEKWNPDESTVLQVLVSIQALVLNEKPYFNEPGHG 185
++ + W P T+ Q+L+ IQ L LNE P +P
Sbjct: 98 --EEDKDWRP-AITIKQILLGIQEL-LNE-PNIQDPAQA 131
>pdb|2O25|C Chain C, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With
Sumo-1- Conjugating Enzyme Ubc9
pdb|2O25|D Chain D, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With
Sumo-1- Conjugating Enzyme Ubc9
pdb|1A3S|A Chain A, Human Ubc9
Length = 160
Score = 58.2 bits (139), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 51/99 (51%), Gaps = 10/99 (10%)
Query: 87 AVIVGTAGTPYHDGLFFFDLAFPADYPNHPPMVHYRSFGLRLNPNLYANGRVCLSLLNTW 146
I G GTP+ GLF + F DYP+ PP + +PN+Y +G VCLS+L
Sbjct: 45 CAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEP--PLFHPNVYPSGTVCLSIL--- 99
Query: 147 TGKKSEKWNPDESTVLQVLVSIQALVLNEKPYFNEPGHG 185
++ + W P T+ Q+L+ IQ L LNE P +P
Sbjct: 100 --EEDKDWRP-AITIKQILLGIQEL-LNE-PNIQDPAQA 133
>pdb|1U9A|A Chain A, Human Ubiquitin-Conjugating Enzyme Ubc9
pdb|1U9B|A Chain A, MurineHUMAN UBIQUITIN-Conjugating Enzyme Ubc9
Length = 160
Score = 58.2 bits (139), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 51/99 (51%), Gaps = 10/99 (10%)
Query: 87 AVIVGTAGTPYHDGLFFFDLAFPADYPNHPPMVHYRSFGLRLNPNLYANGRVCLSLLNTW 146
I G GTP+ GLF + F DYP+ PP + +PN+Y +G VCLS+L
Sbjct: 45 CAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEP--PLFHPNVYPSGTVCLSIL--- 99
Query: 147 TGKKSEKWNPDESTVLQVLVSIQALVLNEKPYFNEPGHG 185
++ + W P T+ Q+L+ IQ L LNE P +P
Sbjct: 100 --EEDKDWRP-AITIKQILLGIQEL-LNE-PNIQDPAQA 133
>pdb|2GRN|A Chain A, Crystal Structure Of Human Rangap1-Ubc9
pdb|2PE6|A Chain A, Non-Covalent Complex Between Human Sumo-1 And Human Ubc9
Length = 161
Score = 58.2 bits (139), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 51/99 (51%), Gaps = 10/99 (10%)
Query: 87 AVIVGTAGTPYHDGLFFFDLAFPADYPNHPPMVHYRSFGLRLNPNLYANGRVCLSLLNTW 146
I G GTP+ GLF + F DYP+ PP + +PN+Y +G VCLS+L
Sbjct: 46 CAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEP--PLFHPNVYPSGTVCLSIL--- 100
Query: 147 TGKKSEKWNPDESTVLQVLVSIQALVLNEKPYFNEPGHG 185
++ + W P T+ Q+L+ IQ L LNE P +P
Sbjct: 101 --EEDKDWRP-AITIKQILLGIQEL-LNE-PNIQDPAQA 134
>pdb|3A4S|A Chain A, The Crystal Structure Of The Sld2:ubc9 Complex
pdb|3A4S|B Chain B, The Crystal Structure Of The Sld2:ubc9 Complex
Length = 163
Score = 58.2 bits (139), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 51/99 (51%), Gaps = 10/99 (10%)
Query: 87 AVIVGTAGTPYHDGLFFFDLAFPADYPNHPPMVHYRSFGLRLNPNLYANGRVCLSLLNTW 146
I G GTP+ GLF + F DYP+ PP + +PN+Y +G VCLS+L
Sbjct: 48 CAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEP--PLFHPNVYPSGTVCLSIL--- 102
Query: 147 TGKKSEKWNPDESTVLQVLVSIQALVLNEKPYFNEPGHG 185
++ + W P T+ Q+L+ IQ L LNE P +P
Sbjct: 103 --EEDKDWRP-AITIKQILLGIQEL-LNE-PNIQDPAQA 136
>pdb|2C4O|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2CLW|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
Length = 165
Score = 58.2 bits (139), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 41/130 (31%), Positives = 67/130 (51%), Gaps = 14/130 (10%)
Query: 51 PAGSH--KKIMQEWKILEKHLPESIFVRVYENRIDLLRAVIVGTAGTPYHDGLFFFDLAF 108
P GS K+I +E L + P + + +A I+G +PY G+FF + F
Sbjct: 15 PRGSMALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHF 74
Query: 109 PADYPNHPPMVHYRSFGLRL-NPNLYANGRVCLSLLNTWTGKKSEKWNPDESTVLQVLVS 167
P DYP PP V +F R+ +PN+ +NG + L +L + +W+P T+ +VL+S
Sbjct: 75 PTDYPFKPPKV---AFTTRIYHPNINSNGSIXLDILRS-------QWSP-ALTISKVLLS 123
Query: 168 IQALVLNEKP 177
I +L+ + P
Sbjct: 124 ICSLLCDPNP 133
>pdb|3UGB|A Chain A, Ubch5c~ubiquitin Conjugate
Length = 147
Score = 58.2 bits (139), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 64/123 (52%), Gaps = 12/123 (9%)
Query: 56 KKIMQEWKILEKHLPESIFVRVYENRIDLLRAVIVGTAGTPYHDGLFFFDLAFPADYPNH 115
K+I +E L + P + + +A I+G +PY G+FF + FP DYP
Sbjct: 4 KRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFK 63
Query: 116 PPMVHYRSFGLRL-NPNLYANGRVCLSLLNTWTGKKSEKWNPDESTVLQVLVSIQALVLN 174
PP V +F R+ +PN+ +NG + L +L + +W+P T+ +VL+SI +L+ +
Sbjct: 64 PPKV---AFTTRIYHPNINSNGSISLDILRS-------QWSP-ALTISKVLLSICSLLCD 112
Query: 175 EKP 177
P
Sbjct: 113 PNP 115
>pdb|1Y6L|A Chain A, Human Ubiquitin Conjugating Enzyme E2e2
pdb|1Y6L|B Chain B, Human Ubiquitin Conjugating Enzyme E2e2
pdb|1Y6L|C Chain C, Human Ubiquitin Conjugating Enzyme E2e2
Length = 149
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 61/124 (49%), Gaps = 10/124 (8%)
Query: 54 SHKKIMQEWKILEKHLPESIFVRVYENRIDLLRAVIVGTAGTPYHDGLFFFDLAFPADYP 113
S K+I +E + P + + I R+ I+G G+ Y G+FF D+ F DYP
Sbjct: 4 SAKRIQKELAEITLDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFSPDYP 63
Query: 114 NHPPMVHYRSFGLRLNPNLYANGRVCLSLLNTWTGKKSEKWNPDESTVLQVLVSIQALVL 173
PP V +R+ N N + G +CL +L + W+P T+ +VL+SI +L+
Sbjct: 64 FKPPKVTFRTRIYHCNIN--SQGVICLDILK-------DNWSP-ALTISKVLLSICSLLT 113
Query: 174 NEKP 177
+ P
Sbjct: 114 DCNP 117
>pdb|2GRR|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-D127s
Length = 161
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 50/99 (50%), Gaps = 10/99 (10%)
Query: 87 AVIVGTAGTPYHDGLFFFDLAFPADYPNHPPMVHYRSFGLRLNPNLYANGRVCLSLLNTW 146
I G GTP+ GLF + F DYP+ PP + +PN+Y +G VCLS+L
Sbjct: 46 CAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEP--PLFHPNVYPSGTVCLSIL--- 100
Query: 147 TGKKSEKWNPDESTVLQVLVSIQALVLNEKPYFNEPGHG 185
++ + W P T+ Q+L+ IQ L LNE P P
Sbjct: 101 --EEDKDWRP-AITIKQILLGIQEL-LNE-PNIQSPAQA 134
>pdb|1JAT|A Chain A, Mms2UBC13 UBIQUITIN CONJUGATING ENZYME COMPLEX
Length = 155
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 40/131 (30%), Positives = 63/131 (48%), Gaps = 12/131 (9%)
Query: 52 AGSHKKIMQEWKILEKHLPESIFVRVYENRIDLLRAVIVGTAGTPYHDGLFFFDLAFPAD 111
A K+I++E + L I +++ + + I G +PY DG+F +L P D
Sbjct: 4 ASLPKRIIKETEKLVSDPVPGITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPDD 63
Query: 112 YPNHPPMVHYRSFGLRLNPNLYANGRVCLSLLNTWTGKKSEKWNPDESTVLQVLVSIQAL 171
YP P V + +PN+ GR+CL +L T W+P + VL+SIQAL
Sbjct: 64 YPMEAPKVRF--LTKIYHPNIDRLGRICLDVLKT-------NWSP-ALQIRTVLLSIQAL 113
Query: 172 VLNEKPYFNEP 182
+ + P N+P
Sbjct: 114 LASPNP--NDP 122
>pdb|2GRQ|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-D127a
Length = 161
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 50/99 (50%), Gaps = 10/99 (10%)
Query: 87 AVIVGTAGTPYHDGLFFFDLAFPADYPNHPPMVHYRSFGLRLNPNLYANGRVCLSLLNTW 146
I G GTP+ GLF + F DYP+ PP + +PN+Y +G VCLS+L
Sbjct: 46 CAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEP--PLFHPNVYPSGTVCLSIL--- 100
Query: 147 TGKKSEKWNPDESTVLQVLVSIQALVLNEKPYFNEPGHG 185
++ + W P T+ Q+L+ IQ L LNE P P
Sbjct: 101 --EEDKDWRP-AITIKQILLGIQEL-LNE-PNIQAPAQA 134
>pdb|3RCZ|B Chain B, Rad60 Sld2 Ubc9 Complex
Length = 163
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 50/93 (53%), Gaps = 10/93 (10%)
Query: 82 IDLL--RAVIVGTAGTPYHDGLFFFDLAFPADYPNHPPMVHYRSFGLRLNPNLYANGRVC 139
+DL+ + I G T + GL+ +AFP +YP PP + +PN+Y +G VC
Sbjct: 42 LDLMNWKVGIPGKPKTSWEGGLYKLTMAFPEEYPTRPPKCRFTP--PLFHPNVYPSGTVC 99
Query: 140 LSLLNTWTGKKSEKWNPDESTVLQVLVSIQALV 172
LS+LN + E W P T+ Q+L+ IQ L+
Sbjct: 100 LSILN-----EEEGWKP-AITIKQILLGIQDLL 126
>pdb|1JBB|A Chain A, Ubiquitin Conjugating Enzyme, Ubc13
pdb|1JBB|B Chain B, Ubiquitin Conjugating Enzyme, Ubc13
Length = 153
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/131 (30%), Positives = 63/131 (48%), Gaps = 12/131 (9%)
Query: 52 AGSHKKIMQEWKILEKHLPESIFVRVYENRIDLLRAVIVGTAGTPYHDGLFFFDLAFPAD 111
A K+I++E + L I +++ + + I G +PY DG+F +L P D
Sbjct: 2 ASLPKRIIKETEKLVSDPVPGITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPDD 61
Query: 112 YPNHPPMVHYRSFGLRLNPNLYANGRVCLSLLNTWTGKKSEKWNPDESTVLQVLVSIQAL 171
YP P V + +PN+ GR+CL +L T W+P + VL+SIQAL
Sbjct: 62 YPMEAPKVRF--LTKIYHPNIDRLGRICLDVLKT-------NWSP-ALQIRTVLLSIQAL 111
Query: 172 VLNEKPYFNEP 182
+ + P N+P
Sbjct: 112 LASPNP--NDP 120
>pdb|3JVZ|A Chain A, E2~ubiquitin-Hect
pdb|3JVZ|B Chain B, E2~ubiquitin-Hect
pdb|3JW0|A Chain A, E2~ubiquitin-Hect
pdb|3JW0|B Chain B, E2~ubiquitin-Hect
Length = 146
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 64/125 (51%), Gaps = 12/125 (9%)
Query: 54 SHKKIMQEWKILEKHLPESIFVRVYENRIDLLRAVIVGTAGTPYHDGLFFFDLAFPADYP 113
+ K+I +E L + P + + +A I+G +PY G+FF + FP DYP
Sbjct: 1 ASKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYP 60
Query: 114 NHPPMVHYRSFGLRL-NPNLYANGRVCLSLLNTWTGKKSEKWNPDESTVLQVLVSIQALV 172
PP V +F R+ +PN+ +NG + L +L + +W+P + +VL+SI +L+
Sbjct: 61 FKPPKV---AFTTRIYHPNINSNGSISLDILRS-------QWSP-ALKISKVLLSICSLL 109
Query: 173 LNEKP 177
+ P
Sbjct: 110 CDPNP 114
>pdb|2GRO|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-N85q
Length = 161
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 35/99 (35%), Positives = 50/99 (50%), Gaps = 10/99 (10%)
Query: 87 AVIVGTAGTPYHDGLFFFDLAFPADYPNHPPMVHYRSFGLRLNPNLYANGRVCLSLLNTW 146
I G GTP+ GLF + F DYP+ PP + +P +Y +G VCLS+L
Sbjct: 46 CAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEP--PLFHPQVYPSGTVCLSIL--- 100
Query: 147 TGKKSEKWNPDESTVLQVLVSIQALVLNEKPYFNEPGHG 185
++ + W P T+ Q+L+ IQ L LNE P +P
Sbjct: 101 --EEDKDWRP-AITIKQILLGIQEL-LNE-PNIQDPAQA 134
>pdb|3BZH|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme E2
E1
Length = 194
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 37/126 (29%), Positives = 62/126 (49%), Gaps = 10/126 (7%)
Query: 52 AGSHKKIMQEWKILEKHLPESIFVRVYENRIDLLRAVIVGTAGTPYHDGLFFFDLAFPAD 111
+ S K+I +E + P + + I R+ I+G G+ Y G+FF D+ F +
Sbjct: 47 STSAKRIQKELADITLDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFTPE 106
Query: 112 YPNHPPMVHYRSFGLRLNPNLYANGRVCLSLLNTWTGKKSEKWNPDESTVLQVLVSIQAL 171
YP PP V +R+ N N + G +CL +L + W+P T+ +VL+SI +L
Sbjct: 107 YPFKPPKVTFRTRIYHCNIN--SQGVICLDILK-------DNWSP-ALTISKVLLSICSL 156
Query: 172 VLNEKP 177
+ + P
Sbjct: 157 LTDCNP 162
>pdb|2GRP|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-Y87a
Length = 161
Score = 55.1 bits (131), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 35/99 (35%), Positives = 50/99 (50%), Gaps = 10/99 (10%)
Query: 87 AVIVGTAGTPYHDGLFFFDLAFPADYPNHPPMVHYRSFGLRLNPNLYANGRVCLSLLNTW 146
I G GTP+ GLF + F DYP+ PP + +PN+ +G VCLS+L
Sbjct: 46 CAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEP--PLFHPNVAPSGTVCLSIL--- 100
Query: 147 TGKKSEKWNPDESTVLQVLVSIQALVLNEKPYFNEPGHG 185
++ + W P T+ Q+L+ IQ L LNE P +P
Sbjct: 101 --EEDKDWRP-AITIKQILLGIQEL-LNE-PNIQDPAQA 134
>pdb|3RZ3|A Chain A, Human Cdc34 E2 In Complex With Cc0651 Inhibitor
pdb|3RZ3|B Chain B, Human Cdc34 E2 In Complex With Cc0651 Inhibitor
pdb|3RZ3|C Chain C, Human Cdc34 E2 In Complex With Cc0651 Inhibitor
pdb|3RZ3|D Chain D, Human Cdc34 E2 In Complex With Cc0651 Inhibitor
Length = 183
Score = 55.1 bits (131), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 46/134 (34%), Positives = 67/134 (50%), Gaps = 11/134 (8%)
Query: 54 SHKKIMQEWKILEKHLPESIFVR-VYENRIDLLRAVIVGTAGTPYHDGLFFFDLAFPADY 112
S K ++ E K L++ E V V E + I G T Y G F L FP DY
Sbjct: 8 SQKALLLELKGLQEEPVEGFRVTLVDEGDLYNWEVAIFGPPNTYYEGGYFKARLKFPIDY 67
Query: 113 PNHPPMVHYRSFGLRLNPNLYANGRVCLSLL-----NTWTGK-KSEKWNPDESTVLQVLV 166
P PP +R +PN+Y G VC+S+L + +G+ SE+WNP ++ V +L+
Sbjct: 68 PYSPPA--FRFLTKMWHPNIYETGDVCISILHPPVDDPQSGELPSERWNPTQN-VRTILL 124
Query: 167 SIQALVLNEKPYFN 180
S+ +L LNE F+
Sbjct: 125 SVISL-LNEPNTFS 137
>pdb|4AUQ|A Chain A, Structure Of Birc7-Ubch5b-Ub Complex.
pdb|4AUQ|D Chain D, Structure Of Birc7-Ubch5b-Ub Complex
Length = 147
Score = 55.1 bits (131), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 63/123 (51%), Gaps = 12/123 (9%)
Query: 56 KKIMQEWKILEKHLPESIFVRVYENRIDLLRAVIVGTAGTPYHDGLFFFDLAFPADYPNH 115
K+I +E L + P + + +A I+G +PY G+FF + FP DYP
Sbjct: 4 KRIHKELNDLARDPPAQCRAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFK 63
Query: 116 PPMVHYRSFGLRL-NPNLYANGRVCLSLLNTWTGKKSEKWNPDESTVLQVLVSIQALVLN 174
PP V +F R+ +P + +NG + L +L + +W+P T+ +VL+SI +L+ +
Sbjct: 64 PPKV---AFTTRIYHPAINSNGSISLDILRS-------QWSP-ALTISKVLLSICSLLCD 112
Query: 175 EKP 177
P
Sbjct: 113 PNP 115
>pdb|2R0J|A Chain A, Crystal Structure Of The Putative Ubiquitin Conjugating
Enzyme, Pfe1350c, From Plasmodium Falciparum
Length = 149
Score = 55.1 bits (131), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 39/125 (31%), Positives = 57/125 (45%), Gaps = 10/125 (8%)
Query: 53 GSHKKIMQEWKILEKHLPESIFVRVYENRIDLLRAVIVGTAGTPYHDGLFFFDLAFPADY 112
G ++I +E + L P I +I G GTPY G + +L P Y
Sbjct: 1 GIPRRITKETQNLANEPPPGIMAVPVPENYRHFNILINGPDGTPYEGGTYKLELFLPEQY 60
Query: 113 PNHPPMVHYRSFGLRLNPNLYANGRVCLSLLNTWTGKKSEKWNPDESTVLQVLVSIQALV 172
P PP V R +PN+ GR+CL +L +KW+P + VL+SIQAL+
Sbjct: 61 PMEPPKV--RFLTKIYHPNIDKLGRICLDIL-------KDKWSP-ALQIRTVLLSIQALL 110
Query: 173 LNEKP 177
+ +P
Sbjct: 111 SSPEP 115
>pdb|4AP4|B Chain B, Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex
pdb|4AP4|E Chain E, Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex
Length = 153
Score = 55.1 bits (131), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 64/123 (52%), Gaps = 12/123 (9%)
Query: 56 KKIMQEWKILEKHLPESIFVRVYENRIDLLRAVIVGTAGTPYHDGLFFFDLAFPADYPNH 115
K+I +E L++ P + + +A I+G + Y G+FF + FP DYP
Sbjct: 10 KRIQKELSDLQRDPPAHCRAGPVGDDLFHWQATIMGPPDSAYQGGVFFLTVHFPTDYPFK 69
Query: 116 PPMVHYRSFGLRL-NPNLYANGRVCLSLLNTWTGKKSEKWNPDESTVLQVLVSIQALVLN 174
PP + +F ++ +PN+ +NG + L +L + +W+P TV +VL+SI +L+ +
Sbjct: 70 PPKI---AFTTKIYHPNINSNGSIKLDILRS-------QWSP-ALTVSKVLLSICSLLCD 118
Query: 175 EKP 177
P
Sbjct: 119 PNP 121
>pdb|3E95|A Chain A, Crystal Structure Of The Plasmodium Falciparum Ubiquitin
Conjugating Enzyme Complex, Pfubc13-Pfuev1a
pdb|3E95|B Chain B, Crystal Structure Of The Plasmodium Falciparum Ubiquitin
Conjugating Enzyme Complex, Pfubc13-Pfuev1a
Length = 151
Score = 55.1 bits (131), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 39/125 (31%), Positives = 57/125 (45%), Gaps = 10/125 (8%)
Query: 53 GSHKKIMQEWKILEKHLPESIFVRVYENRIDLLRAVIVGTAGTPYHDGLFFFDLAFPADY 112
G ++I +E + L P I +I G GTPY G + +L P Y
Sbjct: 1 GIPRRITKETQNLANEPPPGIMAVPVPENYRHFNILINGPDGTPYEGGTYKLELFLPEQY 60
Query: 113 PNHPPMVHYRSFGLRLNPNLYANGRVCLSLLNTWTGKKSEKWNPDESTVLQVLVSIQALV 172
P PP V R +PN+ GR+CL +L +KW+P + VL+SIQAL+
Sbjct: 61 PMEPPKV--RFLTKIYHPNIDKLGRICLDIL-------KDKWSP-ALQIRTVLLSIQALL 110
Query: 173 LNEKP 177
+ +P
Sbjct: 111 SSPEP 115
>pdb|2OB4|A Chain A, Human Ubiquitin-Conjugating Enzyme Cdc34
Length = 180
Score = 55.1 bits (131), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 46/134 (34%), Positives = 67/134 (50%), Gaps = 11/134 (8%)
Query: 54 SHKKIMQEWKILEKHLPESIFVR-VYENRIDLLRAVIVGTAGTPYHDGLFFFDLAFPADY 112
S K ++ E K L++ E V V E + I G T Y G F L FP DY
Sbjct: 5 SQKALLLELKGLQEEPVEGFRVTLVDEGDLYNWEVAIFGPPNTYYEGGYFKARLKFPIDY 64
Query: 113 PNHPPMVHYRSFGLRLNPNLYANGRVCLSLL-----NTWTGK-KSEKWNPDESTVLQVLV 166
P PP +R +PN+Y G VC+S+L + +G+ SE+WNP ++ V +L+
Sbjct: 65 PYSPPA--FRFLTKMWHPNIYETGDVCISILHPPVDDPQSGELPSERWNPTQN-VRTILL 121
Query: 167 SIQALVLNEKPYFN 180
S+ +L LNE F+
Sbjct: 122 SVISL-LNEPNTFS 134
>pdb|1TTE|A Chain A, The Structure Of A Class Ii Ubiquitin-Conjugating Enzyme,
Ubc1
Length = 215
Score = 54.7 bits (130), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 39/129 (30%), Positives = 66/129 (51%), Gaps = 14/129 (10%)
Query: 56 KKIMQEWKILEKHLPESIFVR-VYENRIDLLRAVIVGTAGTPYHDGLFFFDLAFPADYPN 114
K+IM+E + ++ I + V E+ I L+ +G GTPY G F D+ P +YP
Sbjct: 5 KRIMKEIQAVKDDPAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPF 64
Query: 115 HPPMVHYRSFGLRLNPNLYA-NGRVCLSLLNTWTGKKSEKWNPDESTVLQVLVSIQALVL 173
PP + + + +PN+ + G +CL +L W+P T+ L+S+QAL+
Sbjct: 65 KPPKMQFDT--KVYHPNISSVTGAICLDILRN-------AWSP-VITLKSALISLQALLQ 114
Query: 174 NEKPYFNEP 182
+ +P N+P
Sbjct: 115 SPEP--NDP 121
>pdb|2UYZ|A Chain A, Non-Covalent Complex Between Ubc9 And Sumo1
Length = 158
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/99 (35%), Positives = 50/99 (50%), Gaps = 10/99 (10%)
Query: 87 AVIVGTAGTPYHDGLFFFDLAFPADYPNHPPMVHYRSFGLRLNPNLYANGRVCLSLLNTW 146
I G GTP+ GLF + F DYP+ PP + +PN+Y +G V LS+L
Sbjct: 43 CAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEP--PLFHPNVYPSGTVSLSIL--- 97
Query: 147 TGKKSEKWNPDESTVLQVLVSIQALVLNEKPYFNEPGHG 185
++ + W P T+ Q+L+ IQ L LNE P +P
Sbjct: 98 --EEDKDWRP-AITIKQILLGIQEL-LNE-PNIQDPAQA 131
>pdb|1FXT|A Chain A, Structure Of A Conjugating Enzyme-Ubiquitin Thiolester
Complex
pdb|1FZY|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae Ubiquitin
Conjugating Enzyme 1
pdb|1FZY|B Chain B, Crystal Structure Of Saccharomyces Cerevisiae Ubiquitin
Conjugating Enzyme 1
Length = 149
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 39/129 (30%), Positives = 66/129 (51%), Gaps = 14/129 (10%)
Query: 56 KKIMQEWKILEKHLPESIFVR-VYENRIDLLRAVIVGTAGTPYHDGLFFFDLAFPADYPN 114
K+IM+E + ++ I + V E+ I L+ +G GTPY G F D+ P +YP
Sbjct: 4 KRIMKEIQAVKDDPAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPF 63
Query: 115 HPPMVHYRSFGLRLNPNLYA-NGRVCLSLLNTWTGKKSEKWNPDESTVLQVLVSIQALVL 173
PP + + + +PN+ + G +CL +L W+P T+ L+S+QAL+
Sbjct: 64 KPPKMQFDT--KVYHPNISSVTGAICLDILKN-------AWSP-VITLKSALISLQALLQ 113
Query: 174 NEKPYFNEP 182
+ +P N+P
Sbjct: 114 SPEP--NDP 120
>pdb|3UIO|A Chain A, Complex Between Human Rangap1-Sumo2, Ubc9 And The Ir1
Domain From Ranbp2 Containing Ir2 Motif Ii
pdb|3UIP|A Chain A, Complex Between Human Rangap1-Sumo1, Ubc9 And The Ir1
Domain From Ranbp2 Containing Ir2 Motif Ii
Length = 158
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/99 (35%), Positives = 50/99 (50%), Gaps = 10/99 (10%)
Query: 87 AVIVGTAGTPYHDGLFFFDLAFPADYPNHPPMVHYRSFGLRLNPNLYANGRVCLSLLNTW 146
I G GTP+ GLF + F DYP+ PP + +PN+Y +G V LS+L
Sbjct: 43 CAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEP--PLFHPNVYPSGTVXLSIL--- 97
Query: 147 TGKKSEKWNPDESTVLQVLVSIQALVLNEKPYFNEPGHG 185
++ + W P T+ Q+L+ IQ L LNE P +P
Sbjct: 98 --EEDKDWRP-AITIKQILLGIQEL-LNE-PNIQDPAQA 131
>pdb|1ZDN|A Chain A, Ubiquitin-Conjugating Enzyme E2s
pdb|1ZDN|B Chain B, Ubiquitin-Conjugating Enzyme E2s
Length = 158
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/133 (29%), Positives = 65/133 (48%), Gaps = 16/133 (12%)
Query: 48 DHFPAGSHKKIMQEWKILEKHLPESIFVRVYENRIDL--LRAVIVGTAGTPYHDGLFFFD 105
++ P + + +E L P+ I +V+ N DL L+ I G GTPY GLF
Sbjct: 8 ENLPPHIIRLVYKEVTTLTADPPDGI--KVFPNEEDLTDLQVTIEGPEGTPYAGGLFRMK 65
Query: 106 LAFPADYPNHPPMVHYRSFGLRLNPNLYANGRVCLSLLN-TWTGKKSEKWNPDESTVLQV 164
L D+P PP ++ + +PN+ ANG +C+++L WT E + V
Sbjct: 66 LLLGKDFPASPPKGYFLTK--IFHPNVGANGEICVNVLKRDWTA---------ELGIRHV 114
Query: 165 LVSIQALVLNEKP 177
L++I+ L+++ P
Sbjct: 115 LLTIKCLLIHPNP 127
>pdb|3ONG|B Chain B, Crystal Structure Of Uba2ufd-ubc9: Insights Into E1-e2
Interactions In Sumo Pathways
pdb|3ONG|D Chain D, Crystal Structure Of Uba2ufd-ubc9: Insights Into E1-e2
Interactions In Sumo Pathways
Length = 159
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 41/156 (26%), Positives = 78/156 (50%), Gaps = 17/156 (10%)
Query: 56 KKIMQEWKILEKHLPESIF---VRVYENRIDLLR--AVIVGTAGTPYHDGLFFFDLAFPA 110
+++ +E K K P + V+ + +DL + A I G GT + G++ + +P
Sbjct: 9 QRLQEERKKWRKDHPFGFYAKPVKKADGSMDLQKWEAGIPGKEGTNWAGGVYPITVEYPN 68
Query: 111 DYPNHPPMVHYRSFGLRLNPNLYANGRVCLSLLNTWTGKKSEKWNPDESTVLQVLVSIQA 170
+YP+ PP V + + G +PN+Y +G +CLS+LN + + W P T+ Q+++ +Q
Sbjct: 69 EYPSKPPKVKFPA-GF-YHPNVYPSGTICLSILN-----EDQDWRP-AITLKQIVLGVQD 120
Query: 171 LVLNEKPYFNEPGHGMWPGRSIWEKKSTAYNEDVFI 206
L+ + P N P P + + Y++ V +
Sbjct: 121 LLDSPNP--NSPAQE--PAWRSFSRNKAEYDKKVLL 152
>pdb|2GJD|A Chain A, Distinct Functional Domains Of Ubc9 Dictate Cell Survival
And Resistance To Genotoxic Stress
pdb|2GJD|B Chain B, Distinct Functional Domains Of Ubc9 Dictate Cell Survival
And Resistance To Genotoxic Stress
pdb|2GJD|C Chain C, Distinct Functional Domains Of Ubc9 Dictate Cell Survival
And Resistance To Genotoxic Stress
pdb|2GJD|D Chain D, Distinct Functional Domains Of Ubc9 Dictate Cell Survival
And Resistance To Genotoxic Stress
pdb|2EKE|A Chain A, Structure Of A Sumo-Binding-Motif Mimic Bound To Smt3p-
Ubc9p: Conservation Of A Noncovalent Ubiquitin-Like
Protein-E2 Complex As A Platform For Selective
Interactions Within A Sumo Pathway
pdb|2EKE|B Chain B, Structure Of A Sumo-Binding-Motif Mimic Bound To Smt3p-
Ubc9p: Conservation Of A Noncovalent Ubiquitin-Like
Protein-E2 Complex As A Platform For Selective
Interactions Within A Sumo Pathway
Length = 157
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 41/156 (26%), Positives = 78/156 (50%), Gaps = 17/156 (10%)
Query: 56 KKIMQEWKILEKHLPESIF---VRVYENRIDLLR--AVIVGTAGTPYHDGLFFFDLAFPA 110
+++ +E K K P + V+ + +DL + A I G GT + G++ + +P
Sbjct: 7 QRLQEERKKWRKDHPFGFYAKPVKKADGSMDLQKWEAGIPGKEGTNWAGGVYPITVEYPN 66
Query: 111 DYPNHPPMVHYRSFGLRLNPNLYANGRVCLSLLNTWTGKKSEKWNPDESTVLQVLVSIQA 170
+YP+ PP V + + G +PN+Y +G +CLS+LN + + W P T+ Q+++ +Q
Sbjct: 67 EYPSKPPKVKFPA-GF-YHPNVYPSGTICLSILN-----EDQDWRP-AITLKQIVLGVQD 118
Query: 171 LVLNEKPYFNEPGHGMWPGRSIWEKKSTAYNEDVFI 206
L+ + P N P P + + Y++ V +
Sbjct: 119 LLDSPNP--NSPAQE--PAWRSFSRNKAEYDKKVLL 150
>pdb|2F4Z|A Chain A, Toxoplasma Gondii Ubiquitin Conjugating Enzyme
Tgtwinscan_2721- E2 Domain
pdb|2F4Z|B Chain B, Toxoplasma Gondii Ubiquitin Conjugating Enzyme
Tgtwinscan_2721- E2 Domain
Length = 193
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 52/106 (49%), Gaps = 11/106 (10%)
Query: 73 IFVRVYENRIDLLRAVIVGTAGTPYHDGLFFFDLAFPADYPNHPPMVHYRSFGLRLNPNL 132
+ ++ I R I G GTPY G F D+ P DYP +PP + + + +PN+
Sbjct: 65 VSAQIVGGDIHRWRGFIAGPLGTPYEGGHFTLDIVIPPDYPYNPPKMKFVT--KIWHPNI 122
Query: 133 YAN-GRVCLSLLNTWTGKKSEKWNPDESTVLQVLVSIQALVLNEKP 177
+ G +CL +L +W+P T+ L+SIQA++ + P
Sbjct: 123 SSQTGAICLDILK-------HEWSP-ALTIRTALLSIQAMLADPVP 160
>pdb|2GMI|A Chain A, Mms2UBC13~UBIQUITIN
Length = 152
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 39/131 (29%), Positives = 62/131 (47%), Gaps = 12/131 (9%)
Query: 52 AGSHKKIMQEWKILEKHLPESIFVRVYENRIDLLRAVIVGTAGTPYHDGLFFFDLAFPAD 111
A K+I++E + L I +++ + + I G +PY DG+F +L P D
Sbjct: 2 ASLPKRIIKETEKLVSDPVPGITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPDD 61
Query: 112 YPNHPPMVHYRSFGLRLNPNLYANGRVCLSLLNTWTGKKSEKWNPDESTVLQVLVSIQAL 171
YP P V + +PN+ GR+ L +L T W+P + VL+SIQAL
Sbjct: 62 YPMEAPKVRF--LTKIYHPNIDRLGRISLDVLKT-------NWSP-ALQIRTVLLSIQAL 111
Query: 172 VLNEKPYFNEP 182
+ + P N+P
Sbjct: 112 LASPNP--NDP 120
>pdb|4FH1|A Chain A, S. Cerevisiae Ubc13-N79a
Length = 153
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/131 (29%), Positives = 61/131 (46%), Gaps = 12/131 (9%)
Query: 52 AGSHKKIMQEWKILEKHLPESIFVRVYENRIDLLRAVIVGTAGTPYHDGLFFFDLAFPAD 111
A K+I++E + L I +++ + + I G +PY DG+F +L P D
Sbjct: 2 ASLPKRIIKETEKLVSDPVPGITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPDD 61
Query: 112 YPNHPPMVHYRSFGLRLNPNLYANGRVCLSLLNTWTGKKSEKWNPDESTVLQVLVSIQAL 171
YP P V + +P + GR+ L +L T W+P + VL+SIQAL
Sbjct: 62 YPMEAPKVRF--LTKIYHPAIDRLGRISLDVLKT-------NWSP-ALQIRTVLLSIQAL 111
Query: 172 VLNEKPYFNEP 182
+ + P N+P
Sbjct: 112 LASPNP--NDP 120
>pdb|2PWQ|A Chain A, Crystal Structure Of A Putative Ubiquitin Conjugating
Enzyme From Plasmodium Yoelii
Length = 216
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 59/122 (48%), Gaps = 11/122 (9%)
Query: 57 KIMQEWKILEKHLPESIFVRVYENRIDLLRAVIVGTAGTPYHDGLFFFDLAFPADYPNHP 116
++ +E K +E + I + ++ I G GTPY G F + P DYP +P
Sbjct: 27 RLQKELKDIENENVQEIDAHIKDSNFFEWVGFIKGPEGTPYEGGHFTLAITIPNDYPYNP 86
Query: 117 PMVHYRSFGLRLNPNLYAN-GRVCLSLLNTWTGKKSEKWNPDESTVLQVLVSIQALVLNE 175
P + + + +PN+ + G +CL +L +W+P T+ L+SIQAL+ +
Sbjct: 87 PKIKFVT--KIWHPNISSQTGAICLDVLKN-------EWSP-ALTIRTALLSIQALLSDP 136
Query: 176 KP 177
+P
Sbjct: 137 QP 138
>pdb|1WZV|A Chain A, Crystal Structure Of Ubch8
pdb|1WZV|B Chain B, Crystal Structure Of Ubch8
pdb|1WZW|A Chain A, Crystal Structure Of Ubch8
Length = 155
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 66/133 (49%), Gaps = 14/133 (10%)
Query: 53 GSHK---KIMQEWKILEKHLPESIFVRVYENRIDLLRAVIVGTAGTPYHDGLFFFDLAFP 109
GSH ++++E + L+K P + ++ L+ ++ PYH F ++FP
Sbjct: 1 GSHMASMRVVKELEDLQKKPPPYLRNLSSDDANVLVWHALLLPDQPPYHLKAFNLRISFP 60
Query: 110 ADYPNHPPMVHYRSFGLRLNPNLYANGRVCLSLLNTWTGKKSEKWNPDESTVLQVLVSIQ 169
+YP PPM+ + + +PN+ NG++CL +++ SE W P T QVL ++
Sbjct: 61 PEYPFKPPMIKFTTKI--YHPNVDENGQICLPIIS------SENWKPCTKTC-QVLEALN 111
Query: 170 ALVLNEKPYFNEP 182
LV +P EP
Sbjct: 112 VLV--NRPNIREP 122
>pdb|4EPO|B Chain B, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|F Chain F, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|J Chain J, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
Length = 155
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 37/126 (29%), Positives = 58/126 (46%), Gaps = 10/126 (7%)
Query: 52 AGSHKKIMQEWKILEKHLPESIFVRVYENRIDLLRAVIVGTAGTPYHDGLFFFDLAFPAD 111
AG ++I++E + L I E+ VI G +P+ G F +L P +
Sbjct: 7 AGLPRRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEE 66
Query: 112 YPNHPPMVHYRSFGLRLNPNLYANGRVCLSLLNTWTGKKSEKWNPDESTVLQVLVSIQAL 171
YP P V + + +PN+ GR+CL +L +KW+P + VL+SIQAL
Sbjct: 67 YPMAAPKVRFMT--KIYHPNVDKLGRICLDILK-------DKWSP-ALQIRTVLLSIQAL 116
Query: 172 VLNEKP 177
+ P
Sbjct: 117 LSAPNP 122
>pdb|2C2V|B Chain B, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|E Chain E, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|H Chain H, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|K Chain K, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
Length = 154
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 37/126 (29%), Positives = 58/126 (46%), Gaps = 10/126 (7%)
Query: 52 AGSHKKIMQEWKILEKHLPESIFVRVYENRIDLLRAVIVGTAGTPYHDGLFFFDLAFPAD 111
AG ++I++E + L I E+ VI G +P+ G F +L P +
Sbjct: 4 AGLPRRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEE 63
Query: 112 YPNHPPMVHYRSFGLRLNPNLYANGRVCLSLLNTWTGKKSEKWNPDESTVLQVLVSIQAL 171
YP P V + + +PN+ GR+CL +L +KW+P + VL+SIQAL
Sbjct: 64 YPMAAPKVRFMT--KIYHPNVDKLGRICLDILK-------DKWSP-ALQIRTVLLSIQAL 113
Query: 172 VLNEKP 177
+ P
Sbjct: 114 LSAPNP 119
>pdb|3HCT|B Chain B, Crystal Structure Of Traf6 In Complex With Ubc13 In The P1
Space Group
pdb|3HCU|B Chain B, Crystal Structure Of Traf6 In Complex With Ubc13 In The C2
Space Group
pdb|3HCU|D Chain D, Crystal Structure Of Traf6 In Complex With Ubc13 In The C2
Space Group
Length = 155
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 37/126 (29%), Positives = 58/126 (46%), Gaps = 10/126 (7%)
Query: 52 AGSHKKIMQEWKILEKHLPESIFVRVYENRIDLLRAVIVGTAGTPYHDGLFFFDLAFPAD 111
AG ++I++E + L I E+ VI G +P+ G F +L P +
Sbjct: 5 AGLPRRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEE 64
Query: 112 YPNHPPMVHYRSFGLRLNPNLYANGRVCLSLLNTWTGKKSEKWNPDESTVLQVLVSIQAL 171
YP P V + + +PN+ GR+CL +L +KW+P + VL+SIQAL
Sbjct: 65 YPMAAPKVRFMT--KIYHPNVDKLGRICLDILK-------DKWSP-ALQIRTVLLSIQAL 114
Query: 172 VLNEKP 177
+ P
Sbjct: 115 LSAPNP 120
>pdb|1PZV|A Chain A, Crystal Structures Of Two Ubc (E2) Enzymes Of The
Ubiquitin- Conjugating System In Caenorhabditis Elegans
Length = 164
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 57/114 (50%), Gaps = 11/114 (9%)
Query: 77 VYENRIDLLRAVIVGTAGTPYHDGLFFFDLAFPADYPNHPPMVHYRSFGLRLNPNLYANG 136
V +N I +++G T Y G F L FP DYP PP + + S +PN+ G
Sbjct: 28 VDDNDIYKWEVLVIGPPDTLYEGGFFKAILDFPRDYPQKPPKMKFIS--EIWHPNIDKEG 85
Query: 137 RVCLSLL-----NTWTGKK-SEKWNPDESTVLQVLVSIQALVLNEKPYFNEPGH 184
VC+S+L + W ++ E+W P TV +L+S+ +++ + P F P +
Sbjct: 86 NVCISILHDPGDDKWGYERPEERWLP-VHTVETILLSVISMLTD--PNFESPAN 136
>pdb|3SQV|C Chain C, Crystal Structure Of E. Coli O157:h7 E3 Ubiquitin Ligase,
Nlel, With A Human E2, Ubch7
pdb|3SQV|D Chain D, Crystal Structure Of E. Coli O157:h7 E3 Ubiquitin Ligase,
Nlel, With A Human E2, Ubch7
pdb|3SY2|C Chain C, Crystal Structure Of The Salmonella E3 Ubiquitin Ligase
Sopa In Complex With The Human E2 Ubch7
pdb|3SY2|D Chain D, Crystal Structure Of The Salmonella E3 Ubiquitin Ligase
Sopa In Complex With The Human E2 Ubch7
Length = 156
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 46/82 (56%), Gaps = 9/82 (10%)
Query: 96 PYHDGLFFFDLAFPADYPNHPPMVHYRSFGLRLNPNLYANGRVCLSLLNTWTGKKSEKWN 155
PY G F ++ FPA+YP PP + +++ +PN+ G+VCL +++ +E W
Sbjct: 47 PYDKGAFRIEINFPAEYPFKPPKITFKT--KIYHPNIDEKGQVCLPVIS------AENWK 98
Query: 156 PDESTVLQVLVSIQALVLNEKP 177
P T QV+ S+ ALV + +P
Sbjct: 99 PATKTD-QVIQSLIALVNDPQP 119
>pdb|1J7D|B Chain B, Crystal Structure Of Hmms2-Hubc13
pdb|4DHI|D Chain D, Structure Of C. Elegans Otub1 Bound To Human Ubc13
pdb|4DHJ|C Chain C, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHJ|K Chain K, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHJ|G Chain G, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHJ|N Chain N, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHZ|F Chain F, The Structure Of HCEOTUB1-Ubiquitin Aldehyde-Ubc13~ub
Length = 152
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 37/126 (29%), Positives = 58/126 (46%), Gaps = 10/126 (7%)
Query: 52 AGSHKKIMQEWKILEKHLPESIFVRVYENRIDLLRAVIVGTAGTPYHDGLFFFDLAFPAD 111
AG ++I++E + L I E+ VI G +P+ G F +L P +
Sbjct: 2 AGLPRRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEE 61
Query: 112 YPNHPPMVHYRSFGLRLNPNLYANGRVCLSLLNTWTGKKSEKWNPDESTVLQVLVSIQAL 171
YP P V + + +PN+ GR+CL +L +KW+P + VL+SIQAL
Sbjct: 62 YPMAAPKVRFMT--KIYHPNVDKLGRICLDILK-------DKWSP-ALQIRTVLLSIQAL 111
Query: 172 VLNEKP 177
+ P
Sbjct: 112 LSAPNP 117
>pdb|1C4Z|D Chain D, Structure Of E6ap: Insights Into Ubiquitination Pathway
pdb|1FBV|C Chain C, Structure Of A Cbl-Ubch7 Complex: Ring Domain Function In
Ubiquitin-Protein Ligases
Length = 154
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 46/82 (56%), Gaps = 9/82 (10%)
Query: 96 PYHDGLFFFDLAFPADYPNHPPMVHYRSFGLRLNPNLYANGRVCLSLLNTWTGKKSEKWN 155
PY G F ++ FPA+YP PP + +++ +PN+ G+VCL +++ +E W
Sbjct: 45 PYDKGAFRIEINFPAEYPFKPPKITFKT--KIYHPNIDEKGQVCLPVIS------AENWK 96
Query: 156 PDESTVLQVLVSIQALVLNEKP 177
P T QV+ S+ ALV + +P
Sbjct: 97 PATKTD-QVIQSLIALVNDPQP 117
>pdb|2KJH|A Chain A, Nmr Based Structural Model Of The Ubch8-Ubiquitin Complex
Length = 152
Score = 48.1 bits (113), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 63/126 (50%), Gaps = 11/126 (8%)
Query: 57 KIMQEWKILEKHLPESIFVRVYENRIDLLRAVIVGTAGTPYHDGLFFFDLAFPADYPNHP 116
++++E + L+K P + ++ L+ ++ PYH F ++FP +YP P
Sbjct: 5 RVVKELEDLQKKPPPYLRNLSSDDANVLVWHALLLPDQPPYHLKAFNLRISFPPEYPFKP 64
Query: 117 PMVHYRSFGLRLNPNLYANGRVCLSLLNTWTGKKSEKWNPDESTVLQVLVSIQALVLNEK 176
PM+ + + +PN+ NG++CL +++ SE W P T QVL ++ LV +
Sbjct: 65 PMIKFTTKI--YHPNVDENGQICLPIIS------SENWKPCTKTC-QVLEALNVLV--NR 113
Query: 177 PYFNEP 182
P EP
Sbjct: 114 PNIREP 119
>pdb|3VON|C Chain C, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|E Chain E, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|G Chain G, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|J Chain J, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|L Chain L, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|N Chain N, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|Q Chain Q, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|S Chain S, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|U Chain U, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|X Chain X, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|Z Chain Z, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|BB Chain b, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|EE Chain e, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|GG Chain g, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|II Chain i, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|LL Chain l, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|NN Chain n, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|PP Chain p, Crystalstructure Of The Ubiquitin Protease
Length = 148
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 57/125 (45%), Gaps = 10/125 (8%)
Query: 53 GSHKKIMQEWKILEKHLPESIFVRVYENRIDLLRAVIVGTAGTPYHDGLFFFDLAFPADY 112
G ++I++E + L I E+ VI G +P+ G F +L P +Y
Sbjct: 1 GLPRRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEY 60
Query: 113 PNHPPMVHYRSFGLRLNPNLYANGRVCLSLLNTWTGKKSEKWNPDESTVLQVLVSIQALV 172
P P V + + +PN+ GR+CL +L +KW+P + VL+SIQAL+
Sbjct: 61 PMAAPKVRFMT--KIYHPNVDKLGRICLDILK-------DKWSP-ALQIRTVLLSIQALL 110
Query: 173 LNEKP 177
P
Sbjct: 111 SAPNP 115
>pdb|2AWF|A Chain A, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G1
Length = 172
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 51/100 (51%), Gaps = 11/100 (11%)
Query: 83 DLLR--AVIVGTAGTPYHDGLFFFDLAFPADYPNHPPMVHYRSFGLRLNPNLYANGRVCL 140
DL R +I+G T Y G+F L FP DYP PP + + +PN+ NG VC+
Sbjct: 46 DLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRPPKMKF--ITEIWHPNVDKNGDVCI 103
Query: 141 SLLNT------WTGKKSEKWNPDESTVLQVLVSIQALVLN 174
S+L+ K E+W P TV +++S+ +++ +
Sbjct: 104 SILHEPGEDKYGYEKPEERWLPIH-TVETIMISVISMLAD 142
>pdb|2A7L|A Chain A, Structure Of The Human Hypothetical Ubiquitin-Conjugating
Enzyme, Loc55284
pdb|2A7L|B Chain B, Structure Of The Human Hypothetical Ubiquitin-Conjugating
Enzyme, Loc55284
Length = 136
Score = 45.1 bits (105), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 58/123 (47%), Gaps = 10/123 (8%)
Query: 52 AGSHKKIMQEWKILEKHLPESIFV--RVYENRIDLLRAVIVGTAGTPYHDGLFFFDLAFP 109
A K++ +E L+ P + + + +N I + G GT Y F F
Sbjct: 21 ASMQKRLQKELLALQNDPPPGMTLNEKSVQNSITQWIVDMEGAPGTLYEGEKFQLLFKFS 80
Query: 110 ADYPNHPPMVHYRSFGLRLNPNLYANGRVCLSLLNTWTGKKSEKWNPDESTVLQVLVSIQ 169
+ YP P V + + ++P++Y+NG +CLS+L +E W+P S V V +SI
Sbjct: 81 SRYPFDSPQVMFTGENIPVHPHVYSNGHICLSIL-------TEDWSPALS-VQSVCLSII 132
Query: 170 ALV 172
+++
Sbjct: 133 SML 135
>pdb|2FO3|A Chain A, Plasmodium Vivax Ubiquitin Conjugating Enzyme E2
Length = 125
Score = 44.7 bits (104), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 57/120 (47%), Gaps = 8/120 (6%)
Query: 52 AGSHKKIMQEWKILEKHLPESIFVRVYENRIDLLRAVIVGTAGTPYHDGLFFFDLAFPAD 111
++ +I +E + P + + V+ N I + VG T Y + ++ + FP D
Sbjct: 5 GNANYRIQKELHNFLNNPPINCTLDVHPNNIRIWIVKYVGLENTIYANEVYKLKIIFPDD 64
Query: 112 YPNHPPMVHYRSFGLRLNPNLYANGRVCLSLLNTWTGKKSEKWNPDESTVLQVLVSIQAL 171
YP PP+V++ + + ++Y+NG +CLSLL + +NP S VL I L
Sbjct: 65 YPLKPPIVYFLQKPPK-HTHVYSNGDICLSLL-------GDDYNPSLSISGLVLSIISML 116
>pdb|2E2C|A Chain A, E2-C, An Ubiquitin Conjugating Enzyme Required For The
Destruction Of Mitotic Cyclins
Length = 156
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 51/112 (45%), Gaps = 14/112 (12%)
Query: 87 AVIVGTAGTPYHDGLFFFDLAFPADYPNHPPMVHYRSFGLRLNPNLYANGRVCLSLL-NT 145
A + G T Y + L FP+DYP PP+V + + +PN+ +G +CL +L
Sbjct: 43 ATLDGPKDTVYESLKYKLTLEFPSDYPYKPPVVKFTTPC--WHPNVDQSGNICLDILKEN 100
Query: 146 WTGKKSEKWNPDESTVLQVLVSIQALV--LNEKPYFNEPGHGMWPGRSIWEK 195
WT V +L+S+Q+L+ N N MW ++ ++K
Sbjct: 101 WTASYD---------VRTILLSLQSLLGEPNNASPLNAQAADMWSNQTEYKK 143
>pdb|2H2Y|A Chain A, Crystal Structure Of Ubiquitin Conjugating Enzyme E2 From
Plasmodium Falciparum
pdb|2H2Y|B Chain B, Crystal Structure Of Ubiquitin Conjugating Enzyme E2 From
Plasmodium Falciparum
pdb|2H2Y|C Chain C, Crystal Structure Of Ubiquitin Conjugating Enzyme E2 From
Plasmodium Falciparum
pdb|2H2Y|D Chain D, Crystal Structure Of Ubiquitin Conjugating Enzyme E2 From
Plasmodium Falciparum
Length = 136
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 58/120 (48%), Gaps = 8/120 (6%)
Query: 52 AGSHKKIMQEWKILEKHLPESIFVRVYENRIDLLRAVIVGTAGTPYHDGLFFFDLAFPAD 111
++ +I +E K+ P + + V+ + I + VG T Y + ++ + FP +
Sbjct: 19 GNANYRIQKELNNFLKNPPINCTIDVHPSNIRIWIVQYVGLENTIYANEVYKIKIIFPDN 78
Query: 112 YPNHPPMVHYRSFGLRLNPNLYANGRVCLSLLNTWTGKKSEKWNPDESTVLQVLVSIQAL 171
YP PP+V++ + + ++Y+NG +CLS+L + +NP S +L I L
Sbjct: 79 YPLKPPIVYFLQKPPK-HTHVYSNGDICLSVL-------GDDYNPSLSISGLILSIISML 130
>pdb|2F4W|A Chain A, Human Ubiquitin-Conjugating Enzyme E2 J2
pdb|2F4W|B Chain B, Human Ubiquitin-Conjugating Enzyme E2 J2
Length = 187
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 53/119 (44%), Gaps = 10/119 (8%)
Query: 51 PAGSHKKIMQEWKILEKHLPESIFVRVYENRIDLLRAVIVGTAGTPYHDGLFFFDLAFPA 110
P + +++ Q++ ++K I + I V+ G TPY G + L FP
Sbjct: 12 PTTATQRLKQDYLRIKKDPVPYICAEPLPSNILEWHYVVRGPEMTPYEGGYYHGKLIFPR 71
Query: 111 DYPNHPPMVHYRSFGLRLNPNLYANGRVCLSLLNTWTGKKSEKWNP--DESTVLQVLVS 167
++P PP ++ + N N R+CLS+ T + WNP ST+L L+S
Sbjct: 72 EFPFKPPSIYM----ITPNGRFKCNTRLCLSI----TDFHPDTWNPAWSVSTILTGLLS 122
>pdb|3K9P|A Chain A, The Crystal Structure Of E2-25k And Ubiquitin Complex
Length = 217
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 54/119 (45%), Gaps = 7/119 (5%)
Query: 35 HYITSSFTKKNGRDHFPAGSHKKIMQEWKIL---EKHLPESIFVRVYENRIDLLRAVIVG 91
H + + ++ GR + ++I +E+K + E+ I V + + LR I G
Sbjct: 3 HMASMTGGQQMGRGSMANIAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAG 62
Query: 92 TAGTPYHDGLFFFDLAFPADYPNHPPMVHYRSFGLRLNPNLYA-NGRVCLSLL-NTWTG 148
TPY G + ++ P YP +PP V + +PN+ + G +CL +L + W
Sbjct: 63 PPDTPYEGGRYQLEIKIPETYPFNPPKVRF--ITKIWHPNISSVTGAICLDILKDQWAA 119
>pdb|2Y9O|A Chain A, Pex4p-Pex22p Mutant I Structure
Length = 172
Score = 41.6 bits (96), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 38/80 (47%), Gaps = 6/80 (7%)
Query: 77 VYENRIDLLRAVIVGTAGTPYHDGLFFFDLAFPADYPNHPPMVHYRSFGLRLNPNLYANG 136
+ E + A+I G + TPY + F + P+ YP +PP + + + + A G
Sbjct: 42 IDETDLSKWEAIISGPSDTPYENHQFRILIEVPSSYPMNPPKISFMQNNILHSNVKSATG 101
Query: 137 RVCLSLLNTWTGKKSEKWNP 156
+CL++L K E+W P
Sbjct: 102 EICLNIL------KPEEWTP 115
>pdb|1YF9|A Chain A, Structural Analysis Of Leishmania Major Ubiquitin
Conjugating Enzyme E2
pdb|1YF9|B Chain B, Structural Analysis Of Leishmania Major Ubiquitin
Conjugating Enzyme E2
pdb|1YF9|C Chain C, Structural Analysis Of Leishmania Major Ubiquitin
Conjugating Enzyme E2
Length = 171
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 34/60 (56%), Gaps = 6/60 (10%)
Query: 91 GTAGTPYHDGLFFFDLAFPADYPNHPPMVHYRSFGLR-LNPNL-YANGRVCLSLLN-TWT 147
G GTPY DG + + P+DYP P + F R L+PN+ +G VCL ++N TWT
Sbjct: 46 GPEGTPYEDGTWMLHVQLPSDYPFKSPSI---GFCNRILHPNVDERSGSVCLDVINQTWT 102
>pdb|2Y9P|A Chain A, Pex4p-Pex22p Mutant Ii Structure
Length = 172
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 41/81 (50%), Gaps = 8/81 (9%)
Query: 77 VYENRIDLLRAVIVGTAGTPYHDGLFFFDLAFPADYPNHPPMVHYRSFGLRLNPNL-YAN 135
+ E + A+I G + TPY + F + P+ YP +PP + + + L+ N+ A
Sbjct: 42 IDETDLSKWEAIISGPSDTPYENHQFRILIEVPSSYPMNPPKISFMQNNI-LHCNVKSAT 100
Query: 136 GRVCLSLLNTWTGKKSEKWNP 156
G +CL++L K E+W P
Sbjct: 101 GEICLNIL------KPEEWTP 115
>pdb|2Y9M|A Chain A, Pex4p-Pex22p Structure
Length = 172
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 41/81 (50%), Gaps = 8/81 (9%)
Query: 77 VYENRIDLLRAVIVGTAGTPYHDGLFFFDLAFPADYPNHPPMVHYRSFGLRLNPNL-YAN 135
+ E + A+I G + TPY + F + P+ YP +PP + + + L+ N+ A
Sbjct: 42 IDETDLSKWEAIISGPSDTPYENHQFRILIEVPSSYPMNPPKISFMQNNI-LHCNVKSAT 100
Query: 136 GRVCLSLLNTWTGKKSEKWNP 156
G +CL++L K E+W P
Sbjct: 101 GEICLNIL------KPEEWTP 115
>pdb|3E46|A Chain A, Crystal Structure Of Ubiquitin-Conjugating Enzyme E2-25kda
(Huntington Interacting Protein 2) M172a Mutant
pdb|3F92|A Chain A, Crystal Structure Of Ubiquitin-Conjugating Enzyme E2-25kda
(Huntington Interacting Protein 2) M172a Mutant
Crystallized At Ph 8.5
Length = 253
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 36/78 (46%), Gaps = 4/78 (5%)
Query: 73 IFVRVYENRIDLLRAVIVGTAGTPYHDGLFFFDLAFPADYPNHPPMVHYRSFGLRLNPNL 132
I V + + LR I G TPY G + ++ P YP +PP V + +PN+
Sbjct: 80 IKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRF--ITKIWHPNI 137
Query: 133 YA-NGRVCLSLL-NTWTG 148
+ G +CL +L + W
Sbjct: 138 SSVTGAICLDILKDQWAA 155
>pdb|1YLA|A Chain A, Ubiquitin-Conjugating Enzyme E2-25 Kda (Huntington
Interacting Protein 2)
pdb|1YLA|B Chain B, Ubiquitin-Conjugating Enzyme E2-25 Kda (Huntington
Interacting Protein 2)
pdb|2O25|A Chain A, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With
Sumo-1- Conjugating Enzyme Ubc9
pdb|2O25|B Chain B, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With
Sumo-1- Conjugating Enzyme Ubc9
Length = 202
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 36/78 (46%), Gaps = 4/78 (5%)
Query: 73 IFVRVYENRIDLLRAVIVGTAGTPYHDGLFFFDLAFPADYPNHPPMVHYRSFGLRLNPNL 132
I V + + LR I G TPY G + ++ P YP +PP V + +PN+
Sbjct: 29 IKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRF--ITKIWHPNI 86
Query: 133 YA-NGRVCLSLL-NTWTG 148
+ G +CL +L + W
Sbjct: 87 SSVTGAICLDILKDQWAA 104
>pdb|3K9O|A Chain A, The Crystal Structure Of E2-25k And Ubb+1 Complex
Length = 201
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 36/78 (46%), Gaps = 4/78 (5%)
Query: 73 IFVRVYENRIDLLRAVIVGTAGTPYHDGLFFFDLAFPADYPNHPPMVHYRSFGLRLNPNL 132
I V + + LR I G TPY G + ++ P YP +PP V + +PN+
Sbjct: 28 IKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRF--ITKIWHPNI 85
Query: 133 YA-NGRVCLSLL-NTWTG 148
+ G +CL +L + W
Sbjct: 86 SSVTGAICLDILKDQWAA 103
>pdb|2BEP|A Chain A, Crystal Structure Of Ubiquitin Conjugating Enzyme E2-25k
pdb|2BF8|A Chain A, Crystal Structure Of Sumo Modified Ubiquitin Conjugating
Enzyme E2-25k
Length = 159
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 36/79 (45%), Gaps = 4/79 (5%)
Query: 72 SIFVRVYENRIDLLRAVIVGTAGTPYHDGLFFFDLAFPADYPNHPPMVHYRSFGLRLNPN 131
I V + + LR I G TPY G + ++ P YP +PP V + +PN
Sbjct: 30 QIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRF--ITKIWHPN 87
Query: 132 LYA-NGRVCLSLL-NTWTG 148
+ + G +CL +L + W
Sbjct: 88 ISSVTGAICLDILKDQWAA 106
>pdb|1I7K|A Chain A, Crystal Structure Of Human Mitotic-Specific Ubiquitin-
Conjugating Enzyme, Ubch10
pdb|1I7K|B Chain B, Crystal Structure Of Human Mitotic-Specific Ubiquitin-
Conjugating Enzyme, Ubch10
Length = 179
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 41/85 (48%), Gaps = 10/85 (11%)
Query: 88 VIVGTAGTPYHDGLFFFDLAFPADYPNHPPMVHYRSFGLRLNPNLYANGRVCLSLLNTWT 147
I G AGT Y D + L FP+ YP + P V + +PN+ G + L +L
Sbjct: 65 TIHGAAGTVYEDLRYKLSLEFPSGYPYNAPTVKF--LTPCYHPNVDTQGNISLDILK--- 119
Query: 148 GKKSEKWNPDESTVLQVLVSIQALV 172
EKW+ V +L+SIQ+L+
Sbjct: 120 ----EKWS-ALYDVRTILLSIQSLL 139
>pdb|1Y8X|A Chain A, Structural Basis For Recruitment Of Ubc12 By An E2-Binding
Domain In Nedd8's E1
Length = 160
Score = 36.6 bits (83), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 39/148 (26%), Positives = 63/148 (42%), Gaps = 17/148 (11%)
Query: 53 GSHKKIMQEWKILEKHLPESIFVRVYENRIDLL--RAVIVGTAGTPYHDGLFFFDLAFPA 110
S ++ + I E +LP++ + + + DLL + VI G Y G F F
Sbjct: 4 ASAAQLRIQKDINELNLPKTCDIS-FSDPDDLLNFKLVICPDEGF-YKSGKFVFSFKVGQ 61
Query: 111 DYPNHPPMVHYRSFGLRLNPNLYANGRVCLSLLNTWTGKKSEKWNPDESTVLQVLVSIQA 170
YP+ PP V + +PN+ G VCL++L E W P T+ ++ +Q
Sbjct: 62 GYPHDPPKVKCET--XVYHPNIDLEGNVCLNIL-------REDWKP-VLTINSIIYGLQY 111
Query: 171 LVLN---EKPYFNEPGHGMWPGRSIWEK 195
L L E P E + R ++E+
Sbjct: 112 LFLEPNPEDPLNKEAAEVLQNNRRLFEQ 139
>pdb|2ONU|A Chain A, Plasmodium Falciparum Ubiquitin Conjugating Enzyme
Pf10_0330, Putative Homologue Of Human Ube2h
Length = 152
Score = 35.8 bits (81), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 33/59 (55%), Gaps = 4/59 (6%)
Query: 91 GTAGTPYHDGLFFFDLAFPADYPNHPPMVHYRSFGLRLNPNL-YANGRVCLSLLN-TWT 147
G GT Y G++ + P DYP P + + + L+PN+ A+G VCL ++N TWT
Sbjct: 37 GPNGTAYEGGIWKVHVTLPDDYPFASPSIGFMN--KLLHPNVDEASGSVCLDVINQTWT 93
>pdb|2Z5D|A Chain A, Human Ubiquitin-Conjugating Enzyme E2 H
pdb|2Z5D|B Chain B, Human Ubiquitin-Conjugating Enzyme E2 H
Length = 179
Score = 35.4 bits (80), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 4/60 (6%)
Query: 91 GTAGTPYHDGLFFFDLAFPADYPNHPPMVHYRSFGLRLNPNL-YANGRVCLSLLN-TWTG 148
G GTPY G++ + P YP P + + +PN+ A+G VCL ++N TWT
Sbjct: 59 GPQGTPYEGGVWKVRVDLPDKYPFKSPSIGF--MNKIFHPNIDEASGTVCLDVINQTWTA 116
>pdb|2NVU|C Chain C, Structure Of Appbp1-Uba3~nedd8-Nedd8-Mgatp-Ubc12(C111a), A
Trapped Ubiquitin-Like Protein Activation Complex
Length = 180
Score = 35.0 bits (79), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 43/165 (26%), Positives = 69/165 (41%), Gaps = 22/165 (13%)
Query: 41 FTKKNGRDHFPAGSHKK-----IMQEWKILEKHLPESIFVRVYENRIDLL--RAVIVGTA 93
F+ K + GS KK + + I E +LP++ + + + DLL + VI
Sbjct: 7 FSLKQQKKEEEKGSSKKASAAQLRIQKDINELNLPKTCDIS-FSDPDDLLNFKLVICPDE 65
Query: 94 GTPYHDGLFFFDLAFPADYPNHPPMVHYRSFGLRLNPNLYANGRVCLSLLNTWTGKKSEK 153
G Y G F F YP+ PP V + + +PN+ G V L++L E
Sbjct: 66 GF-YKSGKFVFSFKVGQGYPHDPPKVKCET--MVYHPNIDLEGNVALNILR-------ED 115
Query: 154 WNPDESTVLQVLVSIQALVLN---EKPYFNEPGHGMWPGRSIWEK 195
W P T+ ++ +Q L L E P E + R ++E+
Sbjct: 116 WKP-VLTINSIIYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQ 159
>pdb|2EDI|A Chain A, Solution Structure Of The Uq_con Domain From Human Nedd8-
Conjugating Enzyme Nce2
Length = 173
Score = 33.9 bits (76), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 41/89 (46%), Gaps = 4/89 (4%)
Query: 56 KKIMQEWKILEKHLPESIFVRVYE-NRIDLLRAVIVGTAGTPYHDGLFFFDLAFPADYPN 114
K +++E LE +LP + V + N++ + + G Y G F F+ P Y
Sbjct: 17 KLLVKEVAELEANLPCTCKVHFPDPNKLHCFQLTVTPDEGY-YQGGKFQFETEVPDAYNM 75
Query: 115 HPPMVHYRSFGLRLNPNLYANGRVCLSLL 143
PP V + +PN+ G +CLSLL
Sbjct: 76 VPPKV--KCLTKIWHPNITETGEICLSLL 102
>pdb|3FN1|B Chain B, E2-Ring Expansion Of The Nedd8 Cascade Confers Specificity
To Cullin Modification
Length = 167
Score = 33.9 bits (76), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 41/89 (46%), Gaps = 4/89 (4%)
Query: 56 KKIMQEWKILEKHLPESIFVRVYE-NRIDLLRAVIVGTAGTPYHDGLFFFDLAFPADYPN 114
K +++E LE +LP + V + N++ + + G Y G F F+ P Y
Sbjct: 17 KLLVKEVAELEANLPCTCKVHFPDPNKLHCFQLTVTPDEGY-YQGGKFQFETEVPDAYNM 75
Query: 115 HPPMVHYRSFGLRLNPNLYANGRVCLSLL 143
PP V + +PN+ G +CLSLL
Sbjct: 76 VPPKV--KCLTKIWHPNITETGEICLSLL 102
>pdb|4FUS|A Chain A, The X-Ray Structure Of Hahella Chejuensis Family 48
Glycosyl Hydrolase
Length = 695
Score = 32.3 bits (72), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 38/92 (41%), Gaps = 11/92 (11%)
Query: 113 PNHPPMVHYRSFGLRLNPNLY-----ANGRVCLSLLNTWTGKKSEKWNPDESTVLQVLVS 167
P P + GL+ + Y A G + N+W G S K +P + + +
Sbjct: 365 PRTPGATEDWATGLKRSMEFYTWLQSAEGGIAGGATNSWDG--SYKPHPQD----RADAT 418
Query: 168 IQALVLNEKPYFNEPGHGMWPGRSIWEKKSTA 199
+V +E P +++PG G W G W + A
Sbjct: 419 FYGMVYDENPVYHDPGSGTWFGWQAWSMQRVA 450
>pdb|4DS2|A Chain A, Ubiquitin Conjugating Enzyme (Putative) From Trypanosoma
Cruzi
pdb|4DS2|B Chain B, Ubiquitin Conjugating Enzyme (Putative) From Trypanosoma
Cruzi
Length = 167
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 38/81 (46%), Gaps = 16/81 (19%)
Query: 89 IVGTAGTPYHDGLFFFDLAFPADYPNHPPMVHYRSFGLRLNPNLYANGRVCLSLLNTWTG 148
+ G AG Y + F D DYP+ PP V + + +P + G +C ++N +
Sbjct: 63 VYGGAGNTYQLSVLFSD-----DYPHEPPTVRFVT--PVYSPLVTGEGGICDRMVNDF-- 113
Query: 149 KKSEKWNPDE--STVLQVLVS 167
W PD+ S V+++++
Sbjct: 114 -----WTPDQHASDVIKLVLD 129
>pdb|3O2U|A Chain A, S. Cerevisiae Ubc12
pdb|3O2U|B Chain B, S. Cerevisiae Ubc12
Length = 190
Score = 29.3 bits (64), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 30/69 (43%), Gaps = 9/69 (13%)
Query: 88 VIVGTAGTPYHDGLFFFDLAFPADYPNHPPMVHYRSFGLRLNPNLYANGRVCLSLLNTWT 147
VIV Y+ G F+L F YP PP V +PN+ G VCL++L
Sbjct: 68 VIVRPDEGYYNYGSINFNLDFNEVYPIEPPKV--VCLKKIFHPNIDLKGNVCLNIL---- 121
Query: 148 GKKSEKWNP 156
E W+P
Sbjct: 122 ---REDWSP 127
>pdb|3OBQ|A Chain A, Crystal Structure Of The Tsg101 Uev Domain In Complex With
A Human Hrs Psap Peptide
pdb|3OBS|A Chain A, Crystal Structure Of Tsg101 Uev Domain
pdb|3OBU|A Chain A, Crystal Structure Of The Tsg101 Uev Domain In Complex With
A Hiv-1 Ptap Peptide
pdb|3OBX|A Chain A, Crystal Structure Of The Tsg101 Uev Domain In Complex With
A Hiv-1 Gag P7a Mutant Peptide
Length = 146
Score = 28.9 bits (63), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 23/99 (23%), Positives = 44/99 (44%), Gaps = 13/99 (13%)
Query: 89 IVGTAGTPYHDGLFFFDLAF--PADYPNHPPMVHYR---SFGLRLNPNLYANGRVCLSLL 143
+ GT PY + + YP +PP+ + S ++ ++ ANG++ L L
Sbjct: 56 LTGTIPVPYRGNTYNIPICLWLLDTYPYNPPICFVKPTSSMTIKTGKHVDANGKIYLPYL 115
Query: 144 NTWTGKKSEKWNPDESTVLQVLVSIQALVLNEKPYFNEP 182
+ W +S D ++QV++ + +E P F+ P
Sbjct: 116 HEWKHPQS-----DLLGLIQVMIVVFG---DEPPVFSRP 146
>pdb|3P9G|A Chain A, Crystal Structure Of The Tsg101 Uev Domain In Complex With
Fa459 Peptide
pdb|3P9H|A Chain A, Crystal Structure Of The Tsg101 Uev Domain In Complex With
Fa258 Peptide
Length = 145
Score = 28.9 bits (63), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 23/99 (23%), Positives = 44/99 (44%), Gaps = 13/99 (13%)
Query: 89 IVGTAGTPYHDGLFFFDLAF--PADYPNHPPMVHYR---SFGLRLNPNLYANGRVCLSLL 143
+ GT PY + + YP +PP+ + S ++ ++ ANG++ L L
Sbjct: 55 LTGTIPVPYRGNTYNIPICLWLLDTYPYNPPICFVKPTSSMTIKTGKHVDANGKIYLPYL 114
Query: 144 NTWTGKKSEKWNPDESTVLQVLVSIQALVLNEKPYFNEP 182
+ W +S D ++QV++ + +E P F+ P
Sbjct: 115 HEWKHPQS-----DLLGLIQVMIVVFG---DEPPVFSRP 145
>pdb|2F0R|A Chain A, Crystallographic Structure Of Human Tsg101 Uev Domain
pdb|2F0R|B Chain B, Crystallographic Structure Of Human Tsg101 Uev Domain
Length = 159
Score = 28.9 bits (63), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 23/99 (23%), Positives = 44/99 (44%), Gaps = 13/99 (13%)
Query: 89 IVGTAGTPYHDGLFFFDLAF--PADYPNHPPMVHYR---SFGLRLNPNLYANGRVCLSLL 143
+ GT PY + + YP +PP+ + S ++ ++ ANG++ L L
Sbjct: 69 LTGTIPVPYRGNTYNIPICLWLLDTYPYNPPICFVKPTSSMTIKTGKHVDANGKIYLPYL 128
Query: 144 NTWTGKKSEKWNPDESTVLQVLVSIQALVLNEKPYFNEP 182
+ W +S D ++QV++ + +E P F+ P
Sbjct: 129 HEWKHPQS-----DLLGLIQVMIVVFG---DEPPVFSRP 159
>pdb|1KPP|A Chain A, Structure Of The Tsg101 Uev Domain
pdb|1KPQ|A Chain A, Structure Of The Tsg101 Uev Domain
pdb|1M4P|A Chain A, Structure Of The Tsg101 Uev Domain In Complex With A Hiv-1
Ptap "late Domain" Peptide, Dyana Ensemble
pdb|1M4Q|A Chain A, Structure Of The Tsg101 Uev Domain In Complex With A Hiv-1
Ptap "late Domain" Peptide, Cns Ensemble
Length = 145
Score = 28.9 bits (63), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 23/99 (23%), Positives = 44/99 (44%), Gaps = 13/99 (13%)
Query: 89 IVGTAGTPYHDGLFFFDLAF--PADYPNHPPMVHYR---SFGLRLNPNLYANGRVCLSLL 143
+ GT PY + + YP +PP+ + S ++ ++ ANG++ L L
Sbjct: 55 LTGTIPVPYRGNTYNIPICLWLLDTYPYNPPICFVKPTSSMTIKTGKHVDANGKIYLPYL 114
Query: 144 NTWTGKKSEKWNPDESTVLQVLVSIQALVLNEKPYFNEP 182
+ W +S D ++QV++ + +E P F+ P
Sbjct: 115 HEWKHPQS-----DLLGLIQVMIVVFG---DEPPVFSRP 145
>pdb|3Q6V|A Chain A, Crystal Structure Of Serratia Fonticola Sfh-I: Glycerol
Complex
pdb|3Q6V|B Chain B, Crystal Structure Of Serratia Fonticola Sfh-I: Glycerol
Complex
pdb|3SD9|A Chain A, Crystal Structure Of Serratia Fonticola Sfh-I: Source Of
The Nucleophile In The Catalytic Mechanism Of Mono-Zinc
Metallo-Beta- Lactamases
pdb|3SD9|B Chain B, Crystal Structure Of Serratia Fonticola Sfh-I: Source Of
The Nucleophile In The Catalytic Mechanism Of Mono-Zinc
Metallo-Beta- Lactamases
Length = 233
Score = 28.5 bits (62), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 28/47 (59%), Gaps = 5/47 (10%)
Query: 65 LEKHLPESIFVRVYENRIDLLRAVIVGTAGTPYHDGLFFFDLAFPAD 111
LEK LP+++F + + +RA+ +G A T DG+F + FPA+
Sbjct: 121 LEKSLPDTVFPGDFNLQNGSIRAMYLGEAHT--KDGIFVY---FPAE 162
>pdb|2QHA|A Chain A, From Structure To Function: Insights Into The Catalytic
Substrate Specificity And Thermostability Displayed By
Bacillus Subtilis Mannanase Bcman
pdb|2QHA|B Chain B, From Structure To Function: Insights Into The Catalytic
Substrate Specificity And Thermostability Displayed By
Bacillus Subtilis Mannanase Bcman
Length = 342
Score = 28.1 bits (61), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 23/113 (20%), Positives = 45/113 (39%), Gaps = 6/113 (5%)
Query: 48 DHFPAGSHKKIMQEWKILEKHLPESIFVRVYENRIDLLRAVIVGTAGTPYHDGLFFFDLA 107
D +P S+ I+ L+ + ++ + Y+ L + G +G F + L
Sbjct: 226 DFYPGASYVDIVG----LDAYFQDAYSINGYDQLTALNKPFAFTEVGPQTANGSFDYSLF 281
Query: 108 FPADYPNHPPMVHYRSFGLRLNPNLYANGRVCLSLLNTWTGKKSEKWNPDEST 160
A +P +++ ++ +P + N ++WT K E WN D T
Sbjct: 282 INAIKQRYPKTIYFLAWNDEWSPAV--NKGASALYHDSWTLNKGEIWNGDSLT 332
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.137 0.414
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,210,092
Number of Sequences: 62578
Number of extensions: 467804
Number of successful extensions: 1148
Number of sequences better than 100.0: 115
Number of HSP's better than 100.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 979
Number of HSP's gapped (non-prelim): 115
length of query: 359
length of database: 14,973,337
effective HSP length: 100
effective length of query: 259
effective length of database: 8,715,537
effective search space: 2257324083
effective search space used: 2257324083
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)