Query 018254
Match_columns 359
No_of_seqs 320 out of 1602
Neff 5.5
Searched_HMMs 46136
Date Fri Mar 29 07:26:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018254.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018254hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0895 Ubiquitin-conjugating 100.0 3.7E-58 8.1E-63 489.5 10.2 272 23-307 826-1097(1101)
2 COG5078 Ubiquitin-protein liga 100.0 8.3E-42 1.8E-46 301.9 17.1 147 52-212 4-151 (153)
3 KOG0417 Ubiquitin-protein liga 100.0 4.7E-42 1E-46 298.8 14.0 146 54-213 2-147 (148)
4 KOG0419 Ubiquitin-protein liga 100.0 1.7E-40 3.7E-45 282.7 13.7 150 50-213 1-150 (152)
5 PTZ00390 ubiquitin-conjugating 100.0 4.7E-39 1E-43 284.8 17.0 146 54-213 3-148 (152)
6 PLN00172 ubiquitin conjugating 100.0 3.4E-38 7.4E-43 277.8 16.3 145 54-212 2-146 (147)
7 KOG0895 Ubiquitin-conjugating 100.0 5.4E-37 1.2E-41 328.0 15.4 262 21-293 254-516 (1101)
8 KOG0426 Ubiquitin-protein liga 100.0 8.1E-36 1.8E-40 254.3 15.0 154 51-212 2-163 (165)
9 KOG0425 Ubiquitin-protein liga 100.0 3.9E-35 8.5E-40 256.4 16.4 154 54-214 6-166 (171)
10 PF00179 UQ_con: Ubiquitin-con 100.0 4.4E-35 9.5E-40 254.1 15.0 138 57-207 1-139 (140)
11 KOG0424 Ubiquitin-protein liga 100.0 1.2E-34 2.5E-39 250.3 15.0 151 50-212 1-156 (158)
12 cd00195 UBCc Ubiquitin-conjuga 100.0 9.5E-34 2.1E-38 246.2 15.1 139 56-207 2-140 (141)
13 smart00212 UBCc Ubiquitin-conj 100.0 3.5E-33 7.6E-38 243.7 15.6 143 56-211 1-144 (145)
14 KOG0418 Ubiquitin-protein liga 100.0 3.7E-33 8.1E-38 250.4 12.8 147 54-214 4-154 (200)
15 KOG0421 Ubiquitin-protein liga 100.0 8.2E-32 1.8E-36 232.7 12.8 140 52-206 28-167 (175)
16 KOG0422 Ubiquitin-protein liga 100.0 2.1E-29 4.5E-34 216.7 13.2 144 54-211 3-147 (153)
17 KOG0894 Ubiquitin-protein liga 100.0 1.2E-27 2.6E-32 218.9 14.8 158 51-232 3-162 (244)
18 KOG0423 Ubiquitin-protein liga 99.9 4.5E-28 9.6E-33 215.1 7.2 147 48-208 5-151 (223)
19 KOG0420 Ubiquitin-protein liga 99.9 2.8E-26 6E-31 203.6 11.4 141 52-209 27-171 (184)
20 KOG0416 Ubiquitin-protein liga 99.9 3E-25 6.4E-30 196.8 12.0 143 54-213 4-148 (189)
21 KOG0427 Ubiquitin conjugating 99.9 3.6E-25 7.8E-30 189.0 11.0 122 44-175 6-127 (161)
22 KOG0428 Non-canonical ubiquiti 99.8 1.5E-20 3.2E-25 175.3 10.2 142 51-210 9-151 (314)
23 KOG0429 Ubiquitin-conjugating 99.8 4.8E-18 1E-22 156.4 16.2 154 57-222 23-179 (258)
24 KOG0896 Ubiquitin-conjugating 99.0 6.9E-10 1.5E-14 95.9 6.8 111 56-174 8-123 (138)
25 PF05743 UEV: UEV domain; Int 98.0 1.7E-05 3.7E-10 68.1 7.8 107 60-175 3-118 (121)
26 PF14461 Prok-E2_B: Prokaryoti 98.0 9.3E-06 2E-10 70.4 6.2 69 98-174 34-106 (133)
27 PF08694 UFC1: Ubiquitin-fold 97.8 2.5E-05 5.4E-10 68.6 4.3 86 52-144 23-118 (161)
28 KOG0897 Predicted ubiquitin-co 97.6 0.00012 2.6E-09 62.1 6.0 67 103-177 14-80 (122)
29 KOG2391 Vacuolar sorting prote 97.2 0.0012 2.6E-08 65.5 8.2 84 89-180 55-143 (365)
30 KOG3357 Uncharacterized conser 96.7 0.0018 3.9E-08 56.4 4.1 85 52-143 26-120 (167)
31 PF14462 Prok-E2_E: Prokaryoti 96.0 0.061 1.3E-06 46.6 9.6 97 72-173 13-120 (122)
32 PF05773 RWD: RWD domain; Int 95.1 0.041 8.8E-07 44.8 5.1 69 56-125 4-74 (113)
33 smart00591 RWD domain in RING 94.0 0.25 5.5E-06 39.9 7.3 27 98-124 39-65 (107)
34 PF14457 Prok-E2_A: Prokaryoti 89.1 0.57 1.2E-05 42.4 4.4 64 104-174 57-126 (162)
35 PF09765 WD-3: WD-repeat regio 71.9 7.7 0.00017 38.3 5.5 91 52-174 98-188 (291)
36 KOG4018 Uncharacterized conser 51.2 46 0.001 31.6 6.3 22 101-122 50-71 (215)
37 PF06113 BRE: Brain and reprod 48.7 37 0.00081 34.3 5.6 44 82-132 53-96 (333)
38 cd00421 intradiol_dioxygenase 42.1 29 0.00062 30.5 3.4 27 98-124 64-91 (146)
39 cd03457 intradiol_dioxygenase_ 39.0 33 0.00071 31.7 3.4 27 98-124 85-111 (188)
40 KOG1047 Bifunctional leukotrie 37.5 23 0.0005 38.1 2.3 59 95-155 248-311 (613)
41 cd03459 3,4-PCD Protocatechuat 29.4 60 0.0013 29.1 3.4 26 99-124 72-102 (158)
42 KOG0309 Conserved WD40 repeat- 27.4 2E+02 0.0042 32.6 7.3 22 103-124 469-491 (1081)
43 PF09606 Med15: ARC105 or Med1 24.7 25 0.00053 39.5 0.0 25 102-126 716-740 (799)
44 COG0384 Predicted epimerase, P 22.0 1.7E+02 0.0036 29.0 5.2 64 25-94 6-69 (291)
45 TIGR02423 protocat_alph protoc 21.5 97 0.0021 28.8 3.3 26 98-123 95-125 (193)
46 PRK10281 hypothetical protein; 20.6 2.1E+02 0.0046 28.1 5.6 71 24-99 4-75 (299)
47 PF06113 BRE: Brain and reprod 20.1 96 0.0021 31.4 3.1 25 100-124 306-330 (333)
No 1
>KOG0895 consensus Ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.7e-58 Score=489.55 Aligned_cols=272 Identities=50% Similarity=0.819 Sum_probs=249.9
Q ss_pred CCceeeCCCCCCccccccccCCCCCCCCChhHHHHHHHHHHHHHhcCCCCeEEEeecCCcceEEEEEecCCCCCcCCCeE
Q 018254 23 PQFDVVSDVSDHHYITSSFTKKNGRDHFPAGSHKKIMQEWKILEKHLPESIFVRVYENRIDLLRAVIVGTAGTPYHDGLF 102 (359)
Q Consensus 23 ~~f~~v~~~~dh~y~~~~~~~~~~~~~~ss~a~kRL~kEl~~L~k~~p~gI~v~~~e~~l~~w~~~I~GP~gTPYegG~F 102 (359)
.+|||+.|..||||......+ ...+.|++..+.||+.|..++|.||+||.+|+|||+++++|+||.||||++|+|
T Consensus 826 ~~F~v~~~~~~~h~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~vr~~e~r~d~~~~~~~g~~~tpy~~~~f 900 (1101)
T KOG0895|consen 826 LRFDVNYDYMDHHKNANDGNK-----AAEAQWAKKVQTEWKILPLSLPSGIFVRAYEDRMDLLRAVIVGAAGTPYQDGLF 900 (1101)
T ss_pred ccccccCchHHHhhhhccccc-----HHHHHHHHHHHHHHHhhhccCCCceEEEechHHHHHHHHHhhCCCCCccccceE
Confidence 899999999999999763222 222479999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCCCCCCCCeeeecccccccCCCcCCCCceeeccccccCCCCCCCcccCcccHHHHHHHHHHHhccCCCCCCCC
Q 018254 103 FFDLAFPADYPNHPPMVHYRSFGLRLNPNLYANGRVCLSLLNTWTGKKSEKWNPDESTVLQVLVSIQALVLNEKPYFNEP 182 (359)
Q Consensus 103 ~f~I~fP~dYP~~PP~V~f~T~i~rfHPNVy~~GkVCLslL~tw~G~~~e~WsP~~stI~qVL~sIq~Ll~~p~Py~neP 182 (359)
+|||.||++||..||.|+|+|.++|+|||+|++|+||||||+||.|.+.|.|+|+ |+|+|||+|||+|+++.+||||||
T Consensus 901 ~fd~~~~~~yp~~pp~~~~~s~~~r~npnly~~g~vc~s~l~tw~g~~~e~w~~~-s~~lq~l~s~q~l~l~~~py~ne~ 979 (1101)
T KOG0895|consen 901 FFDFQFPQDYPSSPPLVHYHSGGVRLNPNLYEDGKVCLSLLNTWHGRGNEVWNPS-SSILQVLVSIQGLVLNEEPYFNEA 979 (1101)
T ss_pred EEEeecCCCCCCCCCceEeecCceeeCcccccccceehhhhccccCCCccccCcc-hhHHHHHHHhhhhhcccccccCcc
Confidence 9999999999999999999999999999999999999999999999999999995 699999999999999999999999
Q ss_pred CCCCchhhhhHHHcHHHHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhhHHHHHHHHHHhccCcccceeccCCCCC
Q 018254 183 GHGMWPGRSIWEKKSTAYNEDVFILSCKSMTFLLRNPPKNFEGFVRSHFRERGHVILSACKSYLSGHVRVGYYLNEGSSG 262 (359)
Q Consensus 183 ~~~~~~a~~~~~~~~~~Yne~v~~~t~k~m~~~l~~pp~~Fe~~V~~hf~~r~~~Il~~~~~~~~~~~~vg~~~~~~~~~ 262 (359)
||+.+.|+.+++++++.||++++..+|++|+++||+||+.|+++|..||+.|+..|+++|++|+.| .+.|...++....
T Consensus 980 gy~~~~g~~~g~~~s~~y~~~~~~~~~~~~~~~~~~p~~~~~e~i~~Hf~~~~~ei~~~c~a~~~~-~~~~s~~k~~v~d 1058 (1101)
T KOG0895|consen 980 GYEKQRGTAEGEKNSRVYNENAFLLTCKSMVYQLRKPPKCFEEVIHKHFYLRGVEIMAACEAWIAG-ILQGSSDKRVVSD 1058 (1101)
T ss_pred cccccccccccccccccccchhHHHHHHHHHHHhhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhh-chhcccccchhhh
Confidence 999999999999999999999999999999999999999999999999999999999999999999 5788877766321
Q ss_pred CCCCCCCCCCCccCChhHHHHHHHHHHHHHHHHHHcCCcchhhhh
Q 018254 263 GGASSPGPGGAVDVSEKFQGLIVQLYPELVTAFSRTGASLGSLTE 307 (359)
Q Consensus 263 ~~~~~~~~~~~~~~s~~f~~~l~~~~~~l~~~f~~~g~~~~~~~~ 307 (359)
- .+ +....+.+||.+|.++-+.+..++.+.|+.+..+..
T Consensus 1059 ~-~~-----a~ks~s~~~k~~l~~~~~~~~~~~~~~~a~~~~~~~ 1097 (1101)
T KOG0895|consen 1059 H-AA-----ALKSHSAQFKEELLKLPCPEGLAPDTVGAPEVCEAT 1097 (1101)
T ss_pred h-HH-----HHhccchhhhhhhhhCCcccccchhhcCchhhhhcc
Confidence 1 11 245679999999999999999999999998766543
No 2
>COG5078 Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.3e-42 Score=301.87 Aligned_cols=147 Identities=30% Similarity=0.586 Sum_probs=141.3
Q ss_pred hhHHHHHHHHHHHHHhcCCCCeEEEeecC-CcceEEEEEecCCCCCcCCCeEEEEEeCCCCCCCCCCeeeecccccccCC
Q 018254 52 AGSHKKIMQEWKILEKHLPESIFVRVYEN-RIDLLRAVIVGTAGTPYHDGLFFFDLAFPADYPNHPPMVHYRSFGLRLNP 130 (359)
Q Consensus 52 s~a~kRL~kEl~~L~k~~p~gI~v~~~e~-~l~~w~~~I~GP~gTPYegG~F~f~I~fP~dYP~~PP~V~f~T~i~rfHP 130 (359)
+.+.+||++|++.|++++|.+|++.+..+ |+..|+++|.||++||||||.|++.|.||++||++||+|+|.|++| ||
T Consensus 4 ~~a~~RL~kE~~~l~~~~~~~~~a~p~~d~~l~~w~~~i~GP~dtpYegg~f~~~l~fP~~YP~~PPkv~F~t~i~--HP 81 (153)
T COG5078 4 PSALKRLLKELKKLQKDPPPGISAGPVDDDNLFHWEATITGPPDTPYEGGIFKLTLEFPEDYPFKPPKVRFTTKIF--HP 81 (153)
T ss_pred hhHHHHHHHHHHHHhcCCCCceEEEECCCCcceeEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCeeeeccCCc--CC
Confidence 34899999999999999999999999887 9999999999999999999999999999999999999999999987 99
Q ss_pred CcCCCCceeeccccccCCCCCCCcccCcccHHHHHHHHHHHhccCCCCCCCCCCCCchhhhhHHHcHHHHHHHHHHHHHH
Q 018254 131 NLYANGRVCLSLLNTWTGKKSEKWNPDESTVLQVLVSIQALVLNEKPYFNEPGHGMWPGRSIWEKKSTAYNEDVFILSCK 210 (359)
Q Consensus 131 NVy~~GkVCLslL~tw~G~~~e~WsP~~stI~qVL~sIq~Ll~~p~Py~neP~~~~~~a~~~~~~~~~~Yne~v~~~t~k 210 (359)
|||.+|+||||+|+ +.|+|.+ +|.+||++||+||.+||+ ++|++. +|+.+|++|+++|+++|+.++.+
T Consensus 82 NV~~~G~vCLdIL~-------~~WsP~~-~l~sILlsl~slL~~PN~--~~Pln~--daa~~~~~d~~~y~~~vr~~~~~ 149 (153)
T COG5078 82 NVDPSGNVCLDILK-------DRWSPVY-TLETILLSLQSLLLSPNP--DSPLNT--EAATLYREDKEEYEKKVREWVKK 149 (153)
T ss_pred CcCCCCCChhHHHh-------CCCCccc-cHHHHHHHHHHHHcCCCC--CCCCCh--HHHHHHHhCHHHHHHHHHHHHHH
Confidence 99999999999998 8999999 999999999999999999 999999 78999999999999999999887
Q ss_pred HH
Q 018254 211 SM 212 (359)
Q Consensus 211 ~m 212 (359)
++
T Consensus 150 ~~ 151 (153)
T COG5078 150 YA 151 (153)
T ss_pred hc
Confidence 65
No 3
>KOG0417 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.7e-42 Score=298.81 Aligned_cols=146 Identities=29% Similarity=0.577 Sum_probs=140.3
Q ss_pred HHHHHHHHHHHHHhcCCCCeEEEeecCCcceEEEEEecCCCCCcCCCeEEEEEeCCCCCCCCCCeeeecccccccCCCcC
Q 018254 54 SHKKIMQEWKILEKHLPESIFVRVYENRIDLLRAVIVGTAGTPYHDGLFFFDLAFPADYPNHPPMVHYRSFGLRLNPNLY 133 (359)
Q Consensus 54 a~kRL~kEl~~L~k~~p~gI~v~~~e~~l~~w~~~I~GP~gTPYegG~F~f~I~fP~dYP~~PP~V~f~T~i~rfHPNVy 133 (359)
+.+||.+|++.|++++|+||.+.+.++|++.|+|+|.||.|||||||.|+++|+||++||+.||+|+|+|+|| ||||+
T Consensus 2 a~~RI~kE~~~l~~dp~~~~~~~~~~dnl~~w~a~I~GP~~SpYEgG~F~l~I~~p~~YP~~PPkV~F~TkIy--HPNI~ 79 (148)
T KOG0417|consen 2 ASKRIIKELQDLLRDPPPGCSAGPVGDNLFHWQATILGPPGSPYEGGVFFLEIHFPEDYPFKPPKVRFLTKIY--HPNID 79 (148)
T ss_pred cHHHHHHHHHHHhcCCCCCCccCCCCCceeeEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCceEeecccc--cCCcC
Confidence 4579999999999999999999999999999999999999999999999999999999999999999999988 99999
Q ss_pred CCCceeeccccccCCCCCCCcccCcccHHHHHHHHHHHhccCCCCCCCCCCCCchhhhhHHHcHHHHHHHHHHHHHHHHH
Q 018254 134 ANGRVCLSLLNTWTGKKSEKWNPDESTVLQVLVSIQALVLNEKPYFNEPGHGMWPGRSIWEKKSTAYNEDVFILSCKSMT 213 (359)
Q Consensus 134 ~~GkVCLslL~tw~G~~~e~WsP~~stI~qVL~sIq~Ll~~p~Py~neP~~~~~~a~~~~~~~~~~Yne~v~~~t~k~m~ 213 (359)
..|.|||+||+ +.|+|+. +|..||+||++||.+||| ++|+.. +.+.+|+.|+.+|++.||.+|.+++.
T Consensus 80 ~~G~IclDILk-------~~WsPAl-~i~~VllsI~sLL~~Pnp--ddPL~~--~ia~~~k~d~~~~~~~ARewt~kyA~ 147 (148)
T KOG0417|consen 80 SNGRICLDILK-------DQWSPAL-TISKVLLSICSLLSDPNP--DDPLVP--DIAELYKTDRAKYERTAREWTRKYAM 147 (148)
T ss_pred ccccchHHhhh-------ccCChhh-HHHHHHHHHHHHhcCCCC--CccccH--HHHHHHHhhHHHHHHHHHHHHHHHhc
Confidence 99999999998 6799998 999999999999999999 999999 56999999999999999999998764
No 4
>KOG0419 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.7e-40 Score=282.71 Aligned_cols=150 Identities=31% Similarity=0.619 Sum_probs=142.3
Q ss_pred CChhHHHHHHHHHHHHHhcCCCCeEEEeecCCcceEEEEEecCCCCCcCCCeEEEEEeCCCCCCCCCCeeeecccccccC
Q 018254 50 FPAGSHKKIMQEWKILEKHLPESIFVRVYENRIDLLRAVIVGTAGTPYHDGLFFFDLAFPADYPNHPPMVHYRSFGLRLN 129 (359)
Q Consensus 50 ~ss~a~kRL~kEl~~L~k~~p~gI~v~~~e~~l~~w~~~I~GP~gTPYegG~F~f~I~fP~dYP~~PP~V~f~T~i~rfH 129 (359)
|+..|.+||+++++.|++++|.||+..|.++|+++|.++|+||.+|||+||.|++.|.|+.+||.+||.|+|.|.. ||
T Consensus 1 MstpArrrLmrDfkrlqedpp~gisa~P~~~niM~W~a~I~Gp~~tp~e~gtFkLtl~FteeYpnkPP~VrFvs~m--FH 78 (152)
T KOG0419|consen 1 MSTPARRRLMRDFKRLQEDPPAGISAAPVENNIMEWNAVIFGPQDTPFEGGTFKLTLEFTEEYPNKPPTVRFVSKM--FH 78 (152)
T ss_pred CCchHHHHHHHHHHHhhcCCCCCccCCCCccceeeeeeeEEcCCCCCcCCceEEEEEEcccccCCCCCeeEeeeec--cC
Confidence 4556899999999999999999999999999999999999999999999999999999999999999999999995 49
Q ss_pred CCcCCCCceeeccccccCCCCCCCcccCcccHHHHHHHHHHHhccCCCCCCCCCCCCchhhhhHHHcHHHHHHHHHHHHH
Q 018254 130 PNLYANGRVCLSLLNTWTGKKSEKWNPDESTVLQVLVSIQALVLNEKPYFNEPGHGMWPGRSIWEKKSTAYNEDVFILSC 209 (359)
Q Consensus 130 PNVy~~GkVCLslL~tw~G~~~e~WsP~~stI~qVL~sIq~Ll~~p~Py~neP~~~~~~a~~~~~~~~~~Yne~v~~~t~ 209 (359)
||||.+|.+||++|. .+|+|.+ ++..||.|||+||.+|+| ++|+|. +|+.+|.+++++|+++|+..+.
T Consensus 79 PNvya~G~iClDiLq-------NrWsp~Y-dva~ILtsiQslL~dPn~--~sPaN~--eAA~Lf~e~~rey~rrVk~~ve 146 (152)
T KOG0419|consen 79 PNVYADGSICLDILQ-------NRWSPTY-DVASILTSIQSLLNDPNP--NSPANS--EAARLFSENKREYERRVKETVE 146 (152)
T ss_pred CCcCCCCcchHHHHh-------cCCCCch-hHHHHHHHHHHHhcCCCC--CCcccH--HHHHHHhhChHHHHHHHHHHHH
Confidence 999999999999997 7999999 999999999999999999 999998 7899999999999999988776
Q ss_pred HHHH
Q 018254 210 KSMT 213 (359)
Q Consensus 210 k~m~ 213 (359)
+++.
T Consensus 147 qsw~ 150 (152)
T KOG0419|consen 147 QSWS 150 (152)
T ss_pred Hhhc
Confidence 6654
No 5
>PTZ00390 ubiquitin-conjugating enzyme; Provisional
Probab=100.00 E-value=4.7e-39 Score=284.81 Aligned_cols=146 Identities=27% Similarity=0.471 Sum_probs=139.9
Q ss_pred HHHHHHHHHHHHHhcCCCCeEEEeecCCcceEEEEEecCCCCCcCCCeEEEEEeCCCCCCCCCCeeeecccccccCCCcC
Q 018254 54 SHKKIMQEWKILEKHLPESIFVRVYENRIDLLRAVIVGTAGTPYHDGLFFFDLAFPADYPNHPPMVHYRSFGLRLNPNLY 133 (359)
Q Consensus 54 a~kRL~kEl~~L~k~~p~gI~v~~~e~~l~~w~~~I~GP~gTPYegG~F~f~I~fP~dYP~~PP~V~f~T~i~rfHPNVy 133 (359)
++|||++|+++|++++++||.+.+.++|+..|+++|.||+||||+||.|+|+|.||++||++||+|+|.|+++ ||||+
T Consensus 3 ~~kRl~~E~~~l~~~~~~~i~~~~~~~d~~~w~~~i~GP~~tpY~gg~f~~~i~~p~~YP~~pP~v~F~t~i~--HPNV~ 80 (152)
T PTZ00390 3 ISKRIEKETQNLANDPPPGIKAEPDPGNYRHFKILMEGPDGTPYEGGYYKLELFLPEQYPMEPPKVRFLTKIY--HPNID 80 (152)
T ss_pred HHHHHHHHHHHHHhCCCCCeEEEECCCCccEEEEEEEcCCCCCCcCcEEEEEEECccccCCCCCEEEEecCCe--eceEC
Confidence 5799999999999999999999999999999999999999999999999999999999999999999999987 99999
Q ss_pred CCCceeeccccccCCCCCCCcccCcccHHHHHHHHHHHhccCCCCCCCCCCCCchhhhhHHHcHHHHHHHHHHHHHHHHH
Q 018254 134 ANGRVCLSLLNTWTGKKSEKWNPDESTVLQVLVSIQALVLNEKPYFNEPGHGMWPGRSIWEKKSTAYNEDVFILSCKSMT 213 (359)
Q Consensus 134 ~~GkVCLslL~tw~G~~~e~WsP~~stI~qVL~sIq~Ll~~p~Py~neP~~~~~~a~~~~~~~~~~Yne~v~~~t~k~m~ 213 (359)
.+|.||+++|+ +.|+|++ ||.+||++|++||.+|++ ++|.+. +++.+|.+|...|.++|+.++.+++.
T Consensus 81 ~~G~iCl~iL~-------~~W~p~~-ti~~iL~~i~~ll~~P~~--~~pln~--~aa~~~~~d~~~f~~~a~~~~~~~a~ 148 (152)
T PTZ00390 81 KLGRICLDILK-------DKWSPAL-QIRTVLLSIQALLSAPEP--DDPLDT--SVADHFKNNRADAEKVAREWNQKYAK 148 (152)
T ss_pred CCCeEECccCc-------ccCCCCC-cHHHHHHHHHHHHhCCCC--CCchHH--HHHHHHHHCHHHHHHHHHHHHHHHhc
Confidence 99999999997 7899998 999999999999999999 999987 78999999999999999999887654
No 6
>PLN00172 ubiquitin conjugating enzyme; Provisional
Probab=100.00 E-value=3.4e-38 Score=277.76 Aligned_cols=145 Identities=29% Similarity=0.567 Sum_probs=138.3
Q ss_pred HHHHHHHHHHHHHhcCCCCeEEEeecCCcceEEEEEecCCCCCcCCCeEEEEEeCCCCCCCCCCeeeecccccccCCCcC
Q 018254 54 SHKKIMQEWKILEKHLPESIFVRVYENRIDLLRAVIVGTAGTPYHDGLFFFDLAFPADYPNHPPMVHYRSFGLRLNPNLY 133 (359)
Q Consensus 54 a~kRL~kEl~~L~k~~p~gI~v~~~e~~l~~w~~~I~GP~gTPYegG~F~f~I~fP~dYP~~PP~V~f~T~i~rfHPNVy 133 (359)
+.+||++|+++|+++++.++.+.+.++|+..|+++|.||++|||+||.|+|+|.||++||++||+|+|.|+++ ||||+
T Consensus 2 a~~Rl~kE~~~l~~~~~~~~~~~~~~~nl~~w~~~i~GP~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~--HPNv~ 79 (147)
T PLN00172 2 ATKRIQKEHKDLLKDPPSNCSAGPSDENLFRWTASIIGPSDSPYAGGVFFLSILFPPDYPFKPPKVQFTTKIY--HPNIN 79 (147)
T ss_pred hHHHHHHHHHHHHhCCCCCeEEEECCCChheEEEEEECCCCCCCCCCEEEEEEECCcccCCCCCEEEEecCcc--cceEC
Confidence 4699999999999999999999999999999999999999999999999999999999999999999999987 99999
Q ss_pred CCCceeeccccccCCCCCCCcccCcccHHHHHHHHHHHhccCCCCCCCCCCCCchhhhhHHHcHHHHHHHHHHHHHHHH
Q 018254 134 ANGRVCLSLLNTWTGKKSEKWNPDESTVLQVLVSIQALVLNEKPYFNEPGHGMWPGRSIWEKKSTAYNEDVFILSCKSM 212 (359)
Q Consensus 134 ~~GkVCLslL~tw~G~~~e~WsP~~stI~qVL~sIq~Ll~~p~Py~neP~~~~~~a~~~~~~~~~~Yne~v~~~t~k~m 212 (359)
.+|.|||++|+ +.|+|++ +|.+||++|++||.+|++ ++|.+. +++.+|.++...|.++|+.++.+++
T Consensus 80 ~~G~iCl~il~-------~~W~p~~-ti~~il~~i~~ll~~P~~--~~p~n~--~aa~~~~~~~~~f~~~a~~~~~~~a 146 (147)
T PLN00172 80 SNGSICLDILR-------DQWSPAL-TVSKVLLSISSLLTDPNP--DDPLVP--EIARVFKENRSRYEATAREWTQRYA 146 (147)
T ss_pred CCCEEEcccCc-------CCCCCcC-cHHHHHHHHHHHHhCCCC--CCchHH--HHHHHHHHCHHHHHHHHHHHHHHhh
Confidence 99999999997 7899998 999999999999999999 999998 6799999999999999999887643
No 7
>KOG0895 consensus Ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.4e-37 Score=328.00 Aligned_cols=262 Identities=41% Similarity=0.709 Sum_probs=232.3
Q ss_pred CCCCceeeCCCCCCccccccccCCCCCCCCChhHHHHHHHHHHHHHhcCCCCeEEEeecCCcceEEEEEecCCCCCcCCC
Q 018254 21 SFPQFDVVSDVSDHHYITSSFTKKNGRDHFPAGSHKKIMQEWKILEKHLPESIFVRVYENRIDLLRAVIVGTAGTPYHDG 100 (359)
Q Consensus 21 ~~~~f~~v~~~~dh~y~~~~~~~~~~~~~~ss~a~kRL~kEl~~L~k~~p~gI~v~~~e~~l~~w~~~I~GP~gTPYegG 100 (359)
.++.|+++.+..+|||... .......++.+.+|+++|++.|.+++|+||++++++.||+..+++|.||.||||++|
T Consensus 254 ~i~kf~~~ed~~~~~~~~k----~~~~k~hs~~~skrv~ke~~llskdlpEgifvrp~e~RMd~I~alIig~~gtPy~~g 329 (1101)
T KOG0895|consen 254 LIPKFKLVEDKSFHHYAKK----GKSSKPHSKNWSKKVAKELKLLSKDLPEGIFVRPDEGRMDLIKALIIGPDGTPYADG 329 (1101)
T ss_pred chhhhcccccccccccccc----CCCCCccchhhHHHHHHHhhhhcccCCCCccccccccccceeeeEEecCCCCCCcCC
Confidence 6789999999999999976 344555678899999999999999999999999999999999999999999999999
Q ss_pred eEEEEEeCCCCCCCCCCeeeeccc-ccccCCCcCCCCceeeccccccCCCCCCCcccCcccHHHHHHHHHHHhccCCCCC
Q 018254 101 LFFFDLAFPADYPNHPPMVHYRSF-GLRLNPNLYANGRVCLSLLNTWTGKKSEKWNPDESTVLQVLVSIQALVLNEKPYF 179 (359)
Q Consensus 101 ~F~f~I~fP~dYP~~PP~V~f~T~-i~rfHPNVy~~GkVCLslL~tw~G~~~e~WsP~~stI~qVL~sIq~Ll~~p~Py~ 179 (359)
+|.|+|.||..||..||.|+|+|. .+|++||+|.+|+||||+|+||.|...+.|+|..++|.|+|++||.++.+..||+
T Consensus 330 lf~Fdiq~P~~yPa~pp~v~~lt~~~~R~nPNlYn~GKVcLslLgTwtg~~~e~wtp~~~sl~qvL~sIQ~Li~~e~Py~ 409 (1101)
T KOG0895|consen 330 LFLFDIQFPDTYPAVPPHVKYLTGGGVRLNPNLYNDGKVCLSLLGTWTGSRREKWTPNGSSLLQVLESIQGLILNEEPYF 409 (1101)
T ss_pred ceeeEeecCCCCCCCCceeEEeeccceeecCCcccCceEEeeeeeecccccccCCCccccchhhhhhhhhhhhcccCccc
Confidence 999999999999999999999999 6899999999999999999999999899999997799999999999999999999
Q ss_pred CCCCCCCchhhhhHHHcHHHHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhhHHHHHHHHHHhccCcccceeccCC
Q 018254 180 NEPGHGMWPGRSIWEKKSTAYNEDVFILSCKSMTFLLRNPPKNFEGFVRSHFRERGHVILSACKSYLSGHVRVGYYLNEG 259 (359)
Q Consensus 180 neP~~~~~~a~~~~~~~~~~Yne~v~~~t~k~m~~~l~~pp~~Fe~~V~~hf~~r~~~Il~~~~~~~~~~~~vg~~~~~~ 259 (359)
++|++....+.......++.|.+.+...+...|++-+++||..|+..+++||..+.+.++.+|..|-.++ .+|....+.
T Consensus 410 ne~ga~~~~~~a~~~qvs~cv~~~aii~vl~~~~~~Irrpp~~fe~~vqeh~s~~~~~vvievs~y~a~~-tl~~~~~~~ 488 (1101)
T KOG0895|consen 410 NEPGALQKRTSADPYQVSKCVSEEAIIEVLPMMVYEIRRPPEPFESTVQEHYSSREHDVVIEVSAYRAGA-TLGAKVDGI 488 (1101)
T ss_pred ccccccccccCCCccccccccccchhhhhhhhhhhhhcCCccccchHHhhhhcccchhhhhhhhhcccCc-ChhhcCCCc
Confidence 9999998777777888999999999888889998889999999999999999999999999999999885 466544322
Q ss_pred CCCCCCCCCCCCCCccCChhHHHHHHHHHHHHHH
Q 018254 260 SSGGGASSPGPGGAVDVSEKFQGLIVQLYPELVT 293 (359)
Q Consensus 260 ~~~~~~~~~~~~~~~~~s~~f~~~l~~~~~~l~~ 293 (359)
.+ ..+.+....+..|+..|..+...+++
T Consensus 489 p~------~r~ea~gs~~~~~~~dL~~~~Eq~le 516 (1101)
T KOG0895|consen 489 PS------GREEAAGSIELKFPTDLAGFAEQVLE 516 (1101)
T ss_pred cc------ccccccccccccchhhhhhHHHHHHH
Confidence 11 11112344677788888888777665
No 8
>KOG0426 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.1e-36 Score=254.29 Aligned_cols=154 Identities=27% Similarity=0.536 Sum_probs=141.1
Q ss_pred ChhHHHHHHHHHHHHHhcCCCCeEEEe-ecCCcceEEEEEecCCCCCcCCCeEEEEEeCCCCCCCCCCeeeecccccccC
Q 018254 51 PAGSHKKIMQEWKILEKHLPESIFVRV-YENRIDLLRAVIVGTAGTPYHDGLFFFDLAFPADYPNHPPMVHYRSFGLRLN 129 (359)
Q Consensus 51 ss~a~kRL~kEl~~L~k~~p~gI~v~~-~e~~l~~w~~~I~GP~gTPYegG~F~f~I~fP~dYP~~PP~V~f~T~i~rfH 129 (359)
+..++|||++||++|..++|+||.+.| +|+|++.|.|+|.||+||||+||+|-.++.||.|||.+||+++|...++ |
T Consensus 2 ~~~AlkRLm~EykqLt~~~P~GIvAgP~~EdnfF~W~cLI~GP~~T~f~~GvfpA~l~FP~DYPLsPPkm~Ftc~~f--H 79 (165)
T KOG0426|consen 2 AGTALKRLMAEYKQLTLNPPEGIVAGPINEDNFFEWECLIQGPEDTCFEGGVFPARLSFPLDYPLSPPKMRFTCEMF--H 79 (165)
T ss_pred chhHHHHHHHHHHHHccCCCCcceeCCCCccceeeeeeeeeCCCCCcccCCccceeeecCCCCCCCCCceeeecccc--c
Confidence 456899999999999999999999987 5788999999999999999999999999999999999999999999976 9
Q ss_pred CCcCCCCceeeccccccCCC-------CCCCcccCcccHHHHHHHHHHHhccCCCCCCCCCCCCchhhhhHHHcHHHHHH
Q 018254 130 PNLYANGRVCLSLLNTWTGK-------KSEKWNPDESTVLQVLVSIQALVLNEKPYFNEPGHGMWPGRSIWEKKSTAYNE 202 (359)
Q Consensus 130 PNVy~~GkVCLslL~tw~G~-------~~e~WsP~~stI~qVL~sIq~Ll~~p~Py~neP~~~~~~a~~~~~~~~~~Yne 202 (359)
||||.+|+||+|||... |+ ..|+|+|.+ ++..||+|+.+||.+||- .+++|. .|..+|++++.+|++
T Consensus 80 PNiy~dG~VCISILHaP-GDDP~~YEls~ERWSPVQ-SvEKILLSV~SMLaEPNd--ESgANv--dA~~mWRe~R~ef~~ 153 (165)
T KOG0426|consen 80 PNIYPDGRVCISILHAP-GDDPMGYELSAERWSPVQ-SVEKILLSVVSMLAEPND--ESGANV--DACKMWREDREEFEK 153 (165)
T ss_pred CcccCCCeEEEEEeeCC-CCCCccchhhhhcCChHH-HHHHHHHHHHHHHcCCCc--ccCccc--HHHHHHHHhHHHHHH
Confidence 99999999999999753 32 469999999 899999999999999987 677666 789999999999999
Q ss_pred HHHHHHHHHH
Q 018254 203 DVFILSCKSM 212 (359)
Q Consensus 203 ~v~~~t~k~m 212 (359)
.|+.+++++.
T Consensus 154 i~~~lvrKtL 163 (165)
T KOG0426|consen 154 IAKRLVRKTL 163 (165)
T ss_pred HHHHHHHHhh
Confidence 9999888764
No 9
>KOG0425 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.9e-35 Score=256.40 Aligned_cols=154 Identities=27% Similarity=0.464 Sum_probs=141.1
Q ss_pred HHHHHHHHHHHHHhcCCCCeEEEee-cCCcceEEEEEecCCCCCcCCCeEEEEEeCCCCCCCCCCeeeecccccccCCCc
Q 018254 54 SHKKIMQEWKILEKHLPESIFVRVY-ENRIDLLRAVIVGTAGTPYHDGLFFFDLAFPADYPNHPPMVHYRSFGLRLNPNL 132 (359)
Q Consensus 54 a~kRL~kEl~~L~k~~p~gI~v~~~-e~~l~~w~~~I~GP~gTPYegG~F~f~I~fP~dYP~~PP~V~f~T~i~rfHPNV 132 (359)
+..-|+++|+.|++++.+|+.+... +.|+..|.+.|+||++|+|+||.|+..+.||.|||.+||+++|.|.+| ||||
T Consensus 6 a~~ll~~qlk~L~~~pv~gf~~glvd~~dif~WeV~i~gppdTlYeGG~FkA~m~FP~dYP~sPP~~rF~s~mw--HPNv 83 (171)
T KOG0425|consen 6 ASLLLLKQLKELQEEPVEGFSVGLVDDSDIFEWEVAIIGPPDTLYEGGFFKAHMKFPQDYPLSPPTFRFTSKMW--HPNV 83 (171)
T ss_pred hHHHHHHHHHHHhcCCCCccccccccCCceeEEEEEEEcCCCccccCceeEEEEeCcccCCCCCCceeeehhhc--CCCc
Confidence 6677899999999999999999865 559999999999999999999999999999999999999999999987 9999
Q ss_pred CCCCceeeccccccC------CCCCCCcccCcccHHHHHHHHHHHhccCCCCCCCCCCCCchhhhhHHHcHHHHHHHHHH
Q 018254 133 YANGRVCLSLLNTWT------GKKSEKWNPDESTVLQVLVSIQALVLNEKPYFNEPGHGMWPGRSIWEKKSTAYNEDVFI 206 (359)
Q Consensus 133 y~~GkVCLslL~tw~------G~~~e~WsP~~stI~qVL~sIq~Ll~~p~Py~neP~~~~~~a~~~~~~~~~~Yne~v~~ 206 (359)
|++|+||+|||..-. +..+|+|+|.+ |+.+||+||.+||.+||. ++|+|. +|+.+|+++.++|.++|+.
T Consensus 84 y~~G~vCISILH~pgdD~~gyE~~~erW~Pv~-tvetIllSiIsmL~~PN~--~SPANV--DAa~~~Ren~~EykkkV~r 158 (171)
T KOG0425|consen 84 YEDGDVCISILHPPGDDPSGYELPSERWLPVQ-TVETILLSIISMLNSPND--ESPANV--DAAKEWRENPEEYKKKVRR 158 (171)
T ss_pred CCCCCEEEEeecCCCCCcccCCChhhccCCcc-chhHhHHHHHHHHcCCCC--CCccch--HHHHHHhhCHHHHHHHHHH
Confidence 999999999997521 23579999998 999999999999999998 999998 7899999999999999999
Q ss_pred HHHHHHHH
Q 018254 207 LSCKSMTF 214 (359)
Q Consensus 207 ~t~k~m~~ 214 (359)
+++++...
T Consensus 159 ~vr~s~e~ 166 (171)
T KOG0425|consen 159 CVRRSQEE 166 (171)
T ss_pred HHHHHHHh
Confidence 99876543
No 10
>PF00179 UQ_con: Ubiquitin-conjugating enzyme; InterPro: IPR000608 The post-translational attachment of ubiquitin (IPR000626 from INTERPRO) to proteins (ubiquitinylation) alters the function, location or trafficking of a protein, or targets it to the 26S proteasome for degradation [, , ]. Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade []. The E1 enzyme mediates an ATP-dependent transfer of a thioester-linked ubiquitin molecule to a cysteine residue on the E2 enzyme. The E2 enzyme (6.3.2.19 from EC) then either transfers the ubiquitin moiety directly to a substrate, or to an E3 ligase, which can also ubiquitinylate a substrate. There are several different E2 enzymes (over 30 in humans), which are broadly grouped into four classes, all of which have a core catalytic domain (containing the active site cysteine), and some of which have short N- and C-terminal amino acid extensions: class I enzymes consist of just the catalytic core domain (UBC), class II possess a UBC and a C-terminal extension, class III possess a UBC and an N-terminal extension, and class IV possess a UBC and both N- and C-terminal extensions. These extensions appear to be important for some subfamily function, including E2 localisation and protein-protein interactions []. In addition, there are proteins with an E2-like fold that are devoid of catalytic activity, but which appear to assist in poly-ubiquitin chain formation.; GO: 0016881 acid-amino acid ligase activity; PDB: 2AAK_A 3SY2_C 1FBV_C 3SQV_C 1C4Z_D 1JAT_B 2GMI_B 2H2Y_D 2R0J_A 3E95_B ....
Probab=100.00 E-value=4.4e-35 Score=254.07 Aligned_cols=138 Identities=33% Similarity=0.651 Sum_probs=126.6
Q ss_pred HHHHHHHHHHhcCCCCeEEEeecC-CcceEEEEEecCCCCCcCCCeEEEEEeCCCCCCCCCCeeeecccccccCCCcCCC
Q 018254 57 KIMQEWKILEKHLPESIFVRVYEN-RIDLLRAVIVGTAGTPYHDGLFFFDLAFPADYPNHPPMVHYRSFGLRLNPNLYAN 135 (359)
Q Consensus 57 RL~kEl~~L~k~~p~gI~v~~~e~-~l~~w~~~I~GP~gTPYegG~F~f~I~fP~dYP~~PP~V~f~T~i~rfHPNVy~~ 135 (359)
||++|++.|+++++.|+.+.+.++ ++..|+++|.||++|||+||.|+|+|.||++||++||+|+|.|+++ ||||+.+
T Consensus 1 Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~YP~~pP~v~f~t~i~--HPni~~~ 78 (140)
T PF00179_consen 1 RLQKELKELQKNPPPGISVQPSEDDNLFEWHVTIFGPPGTPYEGGIFKFRISFPPDYPFSPPKVRFLTPIF--HPNIDEN 78 (140)
T ss_dssp HHHHHHHHHHHSHTTTEEEEEESTTETTEEEEEEEBETTSTTTTSEEEEEEEETTTTTTS--EEEESSS-S--BTTB-TT
T ss_pred CHHHHHHHHhhCCCCCEEEEECCCCChheEEEEEeccCccceecccccccccccccccccccccccccccc--ccccccc
Confidence 899999999999999999999987 9999999999999999999999999999999999999999999987 9999999
Q ss_pred CceeeccccccCCCCCCCcccCcccHHHHHHHHHHHhccCCCCCCCCCCCCchhhhhHHHcHHHHHHHHHHH
Q 018254 136 GRVCLSLLNTWTGKKSEKWNPDESTVLQVLVSIQALVLNEKPYFNEPGHGMWPGRSIWEKKSTAYNEDVFIL 207 (359)
Q Consensus 136 GkVCLslL~tw~G~~~e~WsP~~stI~qVL~sIq~Ll~~p~Py~neP~~~~~~a~~~~~~~~~~Yne~v~~~ 207 (359)
|+||+++|+ .+.|+|.+ +|.+||.+|++||.+|++ ++|.+. +|+.++.++++.|.++|+.+
T Consensus 79 G~icl~~l~------~~~W~p~~-~i~~il~~i~~ll~~p~~--~~~~n~--~a~~~~~~~~~~f~~~~~~~ 139 (140)
T PF00179_consen 79 GRICLDILN------PESWSPSY-TIESILLSIQSLLSEPNP--EDPLNE--EAAELYKNDREEFEKKAREW 139 (140)
T ss_dssp SBBGHGGGT------TTTC-TTS-HHHHHHHHHHHHHHSTCT--TSTSSH--HHHHHHHHCHHHHHHHHHHH
T ss_pred ccchhhhhh------cccCCccc-ccccHHHHHHHHHhCCCC--CCcchH--HHHHHHHHCHHHHHHHHHHc
Confidence 999999997 35699988 999999999999999988 999987 78999999999999999875
No 11
>KOG0424 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.2e-34 Score=250.25 Aligned_cols=151 Identities=26% Similarity=0.516 Sum_probs=139.0
Q ss_pred CChhHHHHHHHHHHHHHhcCCCCeEEEeec-----CCcceEEEEEecCCCCCcCCCeEEEEEeCCCCCCCCCCeeeeccc
Q 018254 50 FPAGSHKKIMQEWKILEKHLPESIFVRVYE-----NRIDLLRAVIVGTAGTPYHDGLFFFDLAFPADYPNHPPMVHYRSF 124 (359)
Q Consensus 50 ~ss~a~kRL~kEl~~L~k~~p~gI~v~~~e-----~~l~~w~~~I~GP~gTPYegG~F~f~I~fP~dYP~~PP~V~f~T~ 124 (359)
||..++.||+.|-+.+.++.|-|+++.|.. .|+..|.|.|.|+.|||||||+|.+.+.||++||.+||++.|.++
T Consensus 1 ~s~~~~~rl~eErk~wrk~hp~gf~AkP~~~~dg~~nl~~Wec~IPG~~~t~wEGg~y~l~v~F~~dyP~~PPkckF~~p 80 (158)
T KOG0424|consen 1 MSGIALNRLAEERKKWRKDHPFGFYAKPVKNADGTLNLMNWECGIPGKKGTPWEGGLYKLTVNFPDDYPSSPPKCKFKPP 80 (158)
T ss_pred CcchHHHHHHHHHHHHhhcCCCceeeeccCCCCCcceeEEEEeecCCCCCCcCcCceEEEEEeCCccCCCCCCccccCCC
Confidence 345679999999999999999999999843 368999999999999999999999999999999999999999999
Q ss_pred ccccCCCcCCCCceeeccccccCCCCCCCcccCcccHHHHHHHHHHHhccCCCCCCCCCCCCchhhhhHHHcHHHHHHHH
Q 018254 125 GLRLNPNLYANGRVCLSLLNTWTGKKSEKWNPDESTVLQVLVSIQALVLNEKPYFNEPGHGMWPGRSIWEKKSTAYNEDV 204 (359)
Q Consensus 125 i~rfHPNVy~~GkVCLslL~tw~G~~~e~WsP~~stI~qVL~sIq~Ll~~p~Py~neP~~~~~~a~~~~~~~~~~Yne~v 204 (359)
.+ |||||.+|.||||||+. ..+|+|+. ||.|||++||.||.+||+ .+|++. +|..+|.+++..|.++|
T Consensus 81 l~--HPNVypsgtVcLsiL~e-----~~~W~pai-tikqiL~gIqdLL~~Pn~--~~pAq~--eA~~~~~~~r~eYekrv 148 (158)
T KOG0424|consen 81 LF--HPNVYPSGTVCLSILNE-----EKDWRPAI-TIKQILLGIQDLLDTPNI--TSPAQT--EAYTIYCQDRAEYEKRV 148 (158)
T ss_pred Cc--CCCcCCCCcEehhhhcc-----ccCCCchh-hHHHHHHHHHHHhcCCCC--CCchhh--HHHHHHhhCHHHHHHHH
Confidence 76 99999999999999982 23499999 999999999999999999 999998 78999999999999999
Q ss_pred HHHHHHHH
Q 018254 205 FILSCKSM 212 (359)
Q Consensus 205 ~~~t~k~m 212 (359)
+.+++++.
T Consensus 149 r~qak~~a 156 (158)
T KOG0424|consen 149 RAQAKEYA 156 (158)
T ss_pred HHHHHHhc
Confidence 99887653
No 12
>cd00195 UBCc Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain. This is part of the ubiquitin-mediated protein degradation pathway in which a thiol-ester linkage forms between a conserved cysteine and the C-terminus of ubiquitin and complexes with ubiquitin protein ligase enzymes, E3. This pathway regulates many fundamental cellular processes. There are also other E2s which form thiol-ester linkages without the use of E3s as well as several UBC homologs (TSG101, Mms2, Croc-1 and similar proteins) which lack the active site cysteine essential for ubiquitination and appear to function in DNA repair pathways which were omitted from the scope of this CD.
Probab=100.00 E-value=9.5e-34 Score=246.20 Aligned_cols=139 Identities=31% Similarity=0.596 Sum_probs=131.5
Q ss_pred HHHHHHHHHHHhcCCCCeEEEeecCCcceEEEEEecCCCCCcCCCeEEEEEeCCCCCCCCCCeeeecccccccCCCcCCC
Q 018254 56 KKIMQEWKILEKHLPESIFVRVYENRIDLLRAVIVGTAGTPYHDGLFFFDLAFPADYPNHPPMVHYRSFGLRLNPNLYAN 135 (359)
Q Consensus 56 kRL~kEl~~L~k~~p~gI~v~~~e~~l~~w~~~I~GP~gTPYegG~F~f~I~fP~dYP~~PP~V~f~T~i~rfHPNVy~~ 135 (359)
|||++|+++|+++++.|+++.+.++|+..|+++|.||++|||+||.|+|+|.||++||++||.|+|.|.++ ||||+.+
T Consensus 2 ~Rl~~E~~~l~~~~~~~~~v~~~~~~~~~w~~~i~g~~~t~y~g~~~~~~~~~p~~yP~~pP~v~f~~~i~--HpnV~~~ 79 (141)
T cd00195 2 KRLQKELKDLKKDPPSGISAEPVEENLLEWHGTIRGPPDTPYEGGIFKLDIEFPEDYPFKPPKVRFVTKIY--HPNVDEN 79 (141)
T ss_pred chHHHHHHHHHhCCCCCeEEEECCCChhEEEEEEecCCCCCccCCEEEEEEECCCccCCCCCeEEEeCCcc--cCCCCCC
Confidence 79999999999999999999999999999999999999999999999999999999999999999999976 9999999
Q ss_pred CceeeccccccCCCCCCCcccCcccHHHHHHHHHHHhccCCCCCCCCCCCCchhhhhHHHcHHHHHHHHHHH
Q 018254 136 GRVCLSLLNTWTGKKSEKWNPDESTVLQVLVSIQALVLNEKPYFNEPGHGMWPGRSIWEKKSTAYNEDVFIL 207 (359)
Q Consensus 136 GkVCLslL~tw~G~~~e~WsP~~stI~qVL~sIq~Ll~~p~Py~neP~~~~~~a~~~~~~~~~~Yne~v~~~ 207 (359)
|.||+++|.. +.|+|++ +|.+||.+|+++|.+|++ ++|.|. +|+.++.++.+.|+++|+.+
T Consensus 80 G~icl~~l~~------~~W~p~~-~l~~il~~i~~~l~~p~~--~~~~n~--~aa~~~~~~~~~f~~~~~~~ 140 (141)
T cd00195 80 GKICLSILKT------HGWSPAY-TLRTVLLSLQSLLNEPNP--SDPLNA--EAAKLYKENREEFKKKAREW 140 (141)
T ss_pred CCCchhhcCC------CCcCCcC-cHHHHHHHHHHHHhCCCC--CCchhH--HHHHHHHHCHHHHHHHHHHh
Confidence 9999999972 3599999 899999999999998877 899887 78999999999999999865
No 13
>smart00212 UBCc Ubiquitin-conjugating enzyme E2, catalytic domain homologues. Proteins destined for proteasome-mediated degradation may be ubiquitinated. Ubiquitination follows conjugation of ubiquitin to a conserved cysteine residue of UBC homologues. This pathway functions in regulating many fundamental processes required for cell viability.TSG101 is one of several UBC homologues that lacks this active site cysteine.
Probab=100.00 E-value=3.5e-33 Score=243.72 Aligned_cols=143 Identities=31% Similarity=0.600 Sum_probs=134.5
Q ss_pred HHHHHHHHHHHhcCCCCeEEEeecC-CcceEEEEEecCCCCCcCCCeEEEEEeCCCCCCCCCCeeeecccccccCCCcCC
Q 018254 56 KKIMQEWKILEKHLPESIFVRVYEN-RIDLLRAVIVGTAGTPYHDGLFFFDLAFPADYPNHPPMVHYRSFGLRLNPNLYA 134 (359)
Q Consensus 56 kRL~kEl~~L~k~~p~gI~v~~~e~-~l~~w~~~I~GP~gTPYegG~F~f~I~fP~dYP~~PP~V~f~T~i~rfHPNVy~ 134 (359)
+||++|++.|+++++.|+.|.+.++ |+..|+++|.||++|||+||.|.|+|.||++||+.||+|+|.|+++ |||||.
T Consensus 1 ~Rl~~E~~~~~~~~~~~~~v~~~~~~~~~~w~~~i~gp~~~~y~g~~f~~~l~~p~~yP~~pP~v~f~~~i~--Hp~i~~ 78 (145)
T smart00212 1 KRLLKELKELLKDPPPGISAYPVDEDNLLEWTGTIVGPPGTPYEGGIFKLTIEFPPDYPFKPPKVKFITKIY--HPNVDS 78 (145)
T ss_pred ChHHHHHHHHHhCCCCCeEEEECCCCChheEEEEEEcCCCCCcCCcEEEEEEECCcccCCCCCEEEEeCCce--EeeECC
Confidence 5999999999999999999998876 9999999999999999999999999999999999999999999976 999999
Q ss_pred CCceeeccccccCCCCCCCcccCcccHHHHHHHHHHHhccCCCCCCCCCCCCchhhhhHHHcHHHHHHHHHHHHHHH
Q 018254 135 NGRVCLSLLNTWTGKKSEKWNPDESTVLQVLVSIQALVLNEKPYFNEPGHGMWPGRSIWEKKSTAYNEDVFILSCKS 211 (359)
Q Consensus 135 ~GkVCLslL~tw~G~~~e~WsP~~stI~qVL~sIq~Ll~~p~Py~neP~~~~~~a~~~~~~~~~~Yne~v~~~t~k~ 211 (359)
+|.||+++|. .++|+|+. +|.+||.+|+++|.+|++ ++|.+. +|+.+|.++...|+++|+.++.+.
T Consensus 79 ~G~icl~~l~------~~~W~p~~-~l~~il~~i~~~l~~p~~--~~~~n~--eaa~~~~~~~~~f~~~~~~~~~k~ 144 (145)
T smart00212 79 SGEICLDILK------QEKWSPAT-TLETVLLSIQSLLSEPNP--DSPLNA--DAATLYKKNREEFKKKAREWTKKY 144 (145)
T ss_pred CCCEehhhcC------CCCCCCCC-cHHHHHHHHHHHHhCCCC--CCcccH--HHHHHHHHCHHHHHHHHHHHHHHh
Confidence 9999999996 26899997 999999999999999888 999987 789999999999999999988764
No 14
>KOG0418 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.7e-33 Score=250.39 Aligned_cols=147 Identities=24% Similarity=0.478 Sum_probs=138.0
Q ss_pred HHHHHHHHHHHHHhcC---CCCeEEEeecCCcceEEEEEecCCCCCcCCCeEEEEEeCCCCCCCCCCeeeecccccccCC
Q 018254 54 SHKKIMQEWKILEKHL---PESIFVRVYENRIDLLRAVIVGTAGTPYHDGLFFFDLAFPADYPNHPPMVHYRSFGLRLNP 130 (359)
Q Consensus 54 a~kRL~kEl~~L~k~~---p~gI~v~~~e~~l~~w~~~I~GP~gTPYegG~F~f~I~fP~dYP~~PP~V~f~T~i~rfHP 130 (359)
+.+||++|.+++..+. -.||.+...++++...++.|.||+|||||||.|.+||.+|++||++||+|+|.|+|| ||
T Consensus 4 ~~~ri~~e~k~v~~~~eisq~~I~ve~vn~~~~~ikG~I~GP~~TPYEGG~FeldI~iPe~YPF~pPkv~F~TkIw--HP 81 (200)
T KOG0418|consen 4 AFKRINREQKEVLDDPEISQAGIIVEMVNENLKEIKGHIAGPEDTPYEGGVFELDIKIPENYPFKPPKVKFITKIW--HP 81 (200)
T ss_pred HHHHHHHHHHHhccChhhhhcceEEEEccCChhhceeEecCCCCCCCCCceEEEEEecCCCCCCCCCceeeeeeee--cC
Confidence 7999999999999887 579999999999999999999999999999999999999999999999999999998 99
Q ss_pred CcC-CCCceeeccccccCCCCCCCcccCcccHHHHHHHHHHHhccCCCCCCCCCCCCchhhhhHHHcHHHHHHHHHHHHH
Q 018254 131 NLY-ANGRVCLSLLNTWTGKKSEKWNPDESTVLQVLVSIQALVLNEKPYFNEPGHGMWPGRSIWEKKSTAYNEDVFILSC 209 (359)
Q Consensus 131 NVy-~~GkVCLslL~tw~G~~~e~WsP~~stI~qVL~sIq~Ll~~p~Py~neP~~~~~~a~~~~~~~~~~Yne~v~~~t~ 209 (359)
||. .+|.|||++|+ +.|.++. ||..+|+|||+||..|+| ++|..+.+ +..|.++++.|...++.|+.
T Consensus 82 nVSs~tGaICLDilk-------d~Wa~sl-TlrtvLislQalL~~pEp--~dPqDavv--a~qy~~n~~~F~~TAr~WT~ 149 (200)
T KOG0418|consen 82 NVSSQTGAICLDILK-------DQWAASL-TLRTVLISLQALLCAPEP--KDPQDAVV--AEQYVDNYEMFYKTARYWTT 149 (200)
T ss_pred CCCcccccchhhhhh-------cccchhh-hHHHHHHHHHHHHcCCCC--CChHHHHH--HHHHhhhHHHHHHHHHHHHH
Confidence 998 99999999998 8999998 999999999999999999 99998854 88999999999999998887
Q ss_pred HHHHH
Q 018254 210 KSMTF 214 (359)
Q Consensus 210 k~m~~ 214 (359)
.++-.
T Consensus 150 ~fA~~ 154 (200)
T KOG0418|consen 150 EFAGG 154 (200)
T ss_pred HHhCC
Confidence 75543
No 15
>KOG0421 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=8.2e-32 Score=232.66 Aligned_cols=140 Identities=24% Similarity=0.415 Sum_probs=132.1
Q ss_pred hhHHHHHHHHHHHHHhcCCCCeEEEeecCCcceEEEEEecCCCCCcCCCeEEEEEeCCCCCCCCCCeeeecccccccCCC
Q 018254 52 AGSHKKIMQEWKILEKHLPESIFVRVYENRIDLLRAVIVGTAGTPYHDGLFFFDLAFPADYPNHPPMVHYRSFGLRLNPN 131 (359)
Q Consensus 52 s~a~kRL~kEl~~L~k~~p~gI~v~~~e~~l~~w~~~I~GP~gTPYegG~F~f~I~fP~dYP~~PP~V~f~T~i~rfHPN 131 (359)
....|||++|+-.|.....+||++.|.++|++.|.++|.||.+|+|+|-.|++.+.||.+||+.||+|.|.|+.| |||
T Consensus 28 ~~V~KRLq~ELm~Lmms~~~gISAFP~~dnlf~WvGtItGp~dTvyegl~yklSl~Fp~~YPy~pP~vkFltpc~--HPN 105 (175)
T KOG0421|consen 28 HSVTKRLQSELMGLMMSNTPGISAFPESDNLFKWVGTITGPKDTVYEGLKYKLSLSFPNNYPYKPPTVKFLTPCF--HPN 105 (175)
T ss_pred chHHHHHHHHHHHHHhcCCCCcccCcCcCceeEEeeEeeCCCCccccCcEEEEEEecCCCCCCCCCeeEeecccc--CCC
Confidence 568999999999999999999999999999999999999999999999999999999999999999999999966 999
Q ss_pred cCCCCceeeccccccCCCCCCCcccCcccHHHHHHHHHHHhccCCCCCCCCCCCCchhhhhHHHcHHHHHHHHHH
Q 018254 132 LYANGRVCLSLLNTWTGKKSEKWNPDESTVLQVLVSIQALVLNEKPYFNEPGHGMWPGRSIWEKKSTAYNEDVFI 206 (359)
Q Consensus 132 Vy~~GkVCLslL~tw~G~~~e~WsP~~stI~qVL~sIq~Ll~~p~Py~neP~~~~~~a~~~~~~~~~~Yne~v~~ 206 (359)
|+-.|.|||+||. +.|+..+ ++..||+|||+||-+||- .+|+|. .|+.+|. |..+|.+.+..
T Consensus 106 VD~~GnIcLDILk-------dKWSa~Y-dVrTILLSiQSLLGEPNn--~SPLNa--qAAelW~-d~~eykk~l~~ 167 (175)
T KOG0421|consen 106 VDLSGNICLDILK-------DKWSAVY-DVRTILLSIQSLLGEPNN--SSPLNA--QAAELWS-DQEEYKKYLEA 167 (175)
T ss_pred ccccccchHHHHH-------HHHHHHH-hHHHHHHHHHHHhCCCCC--CCcchh--HHHHHhc-CHHHHHHHHHH
Confidence 9999999999998 8999998 999999999999999988 999998 6788887 88999876643
No 16
>KOG0422 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=2.1e-29 Score=216.74 Aligned_cols=144 Identities=23% Similarity=0.462 Sum_probs=135.3
Q ss_pred HHHHHHHHHHHHHhcCCCCeE-EEeecCCcceEEEEEecCCCCCcCCCeEEEEEeCCCCCCCCCCeeeecccccccCCCc
Q 018254 54 SHKKIMQEWKILEKHLPESIF-VRVYENRIDLLRAVIVGTAGTPYHDGLFFFDLAFPADYPNHPPMVHYRSFGLRLNPNL 132 (359)
Q Consensus 54 a~kRL~kEl~~L~k~~p~gI~-v~~~e~~l~~w~~~I~GP~gTPYegG~F~f~I~fP~dYP~~PP~V~f~T~i~rfHPNV 132 (359)
+.+||++|+.+|+++....+. ++.++.+++.|.++|+ |.+-||..|.|.+.|.||.+||++||+++|.|.+| ||||
T Consensus 3 a~~Rl~kEL~dl~~~~~~~~rn~~~~e~nll~wt~lli-pd~ppY~kgaF~l~I~fp~eYPFKPP~i~f~tkiY--HpNV 79 (153)
T KOG0422|consen 3 APRRLRKELADLQKNKMKFFRNIEVDEANLLKWTGLLI-PDKPPYNKGAFRLEIDFPVEYPFKPPKIKFKTKIY--HPNV 79 (153)
T ss_pred hhHHHHHHHHHHHhccHHHHhhhhcccccceeEEeEec-CCCCCccCcceEEEeeCCCCCCCCCCeeeeeeeec--cCCC
Confidence 689999999999999887555 6788999999999999 89999999999999999999999999999999998 9999
Q ss_pred CCCCceeeccccccCCCCCCCcccCcccHHHHHHHHHHHhccCCCCCCCCCCCCchhhhhHHHcHHHHHHHHHHHHHHH
Q 018254 133 YANGRVCLSLLNTWTGKKSEKWNPDESTVLQVLVSIQALVLNEKPYFNEPGHGMWPGRSIWEKKSTAYNEDVFILSCKS 211 (359)
Q Consensus 133 y~~GkVCLslL~tw~G~~~e~WsP~~stI~qVL~sIq~Ll~~p~Py~neP~~~~~~a~~~~~~~~~~Yne~v~~~t~k~ 211 (359)
++.|.||+.++.+ |+|.|.+ ++.|||.++.+|+.+|+| ..|... +.+.+|.+|...|.+++..++.+.
T Consensus 80 De~gqvClPiis~------EnWkP~T-~teqVlqaLi~liN~P~p--e~plr~--dlA~ey~~d~~kF~K~Aee~tkK~ 147 (153)
T KOG0422|consen 80 DEKGQVCLPIISA------ENWKPAT-RTEQVLQALIALINDPEP--EHPLRI--DLAEEYIKDPKKFVKNAEEFTKKY 147 (153)
T ss_pred CCCCceeeeeeec------ccccCcc-cHHHHHHHHHHHhcCCCc--cccchh--hHHHHHHHCHHHHHHhHHHHHHHh
Confidence 9999999999984 9999999 999999999999999999 999998 569999999999999999888774
No 17
>KOG0894 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=1.2e-27 Score=218.87 Aligned_cols=158 Identities=25% Similarity=0.450 Sum_probs=126.9
Q ss_pred ChhHHHHHHHHHHHHHhcCCCCeEEEeecCCcceEEEEEecCCCCCcCCCeEEEEEeCCCCCCCCCCeeeecccccccCC
Q 018254 51 PAGSHKKIMQEWKILEKHLPESIFVRVYENRIDLLRAVIVGTAGTPYHDGLFFFDLAFPADYPNHPPMVHYRSFGLRLNP 130 (359)
Q Consensus 51 ss~a~kRL~kEl~~L~k~~p~gI~v~~~e~~l~~w~~~I~GP~gTPYegG~F~f~I~fP~dYP~~PP~V~f~T~i~rfHP 130 (359)
++.+.|||++||+.|.++++++|.++|.++|+.+||.+|.||+||||+||.|+..|.||++||++||.|++.|+--||-+
T Consensus 3 ~k~a~kRl~keY~~l~k~Pv~~i~A~P~p~nILEWHYvl~GpedTPy~GG~YhGkl~FP~eyP~KPPaI~MiTPNGRFkt 82 (244)
T KOG0894|consen 3 SKAAVKRLQKEYRALCKDPVPYIVARPNPNNILEWHYVLRGPEDTPYYGGYYHGKLIFPPEYPFKPPAITMITPNGRFKT 82 (244)
T ss_pred chHHHHHHHHHHHHHHhCCchhhccCCCccceeeeEEEeeCCCCCCccCceeeeEEeCCCCCCCCCCeeEEECCCCceec
Confidence 35799999999999999999999999999999999999999999999999999999999999999999999999555655
Q ss_pred CcCCCCceeeccccccCCCCCCCcccCcccHHHHHHHHHHHhccCCCCCCCCCCCCchhhhhHHHcHHHHHHHHHHHHHH
Q 018254 131 NLYANGRVCLSLLNTWTGKKSEKWNPDESTVLQVLVSIQALVLNEKPYFNEPGHGMWPGRSIWEKKSTAYNEDVFILSCK 210 (359)
Q Consensus 131 NVy~~GkVCLslL~tw~G~~~e~WsP~~stI~qVL~sIq~Ll~~p~Py~neP~~~~~~a~~~~~~~~~~Yne~v~~~t~k 210 (359)
| -++|||+.. .|++.|+|++ ++..||.++.++|.+ ++|...+++.+ ..+.+.|.+..
T Consensus 83 n----tRLCLSiSD----fHPdsWNP~W-sVStILtGLlSFM~e-----~~pTtGSI~tS---~~~kr~lA~~S------ 139 (244)
T KOG0894|consen 83 N----TRLCLSISD----FHPDSWNPGW-SVSTILTGLLSFMTE-----DSPTTGSIETS---DQDKRMLAKSS------ 139 (244)
T ss_pred C----ceEEEeccc----cCcCcCCCcc-cHHHHHHHHHHHHhc-----CCCccCccccc---HHHHHHHHHhh------
Confidence 5 599999997 5789999999 899999999999998 55565555322 22233333222
Q ss_pred HHHHHHhCC--CCCcHHHHHHHHH
Q 018254 211 SMTFLLRNP--PKNFEGFVRSHFR 232 (359)
Q Consensus 211 ~m~~~l~~p--p~~Fe~~V~~hf~ 232 (359)
...-++++ ...|.++|+++-+
T Consensus 140 -laFN~kn~~F~~lFPE~Vee~nq 162 (244)
T KOG0894|consen 140 -LAFNLKNPKFCELFPEVVEEYNQ 162 (244)
T ss_pred -hhhccCChHHHHHhHHHHHHHHH
Confidence 22222333 2358888887533
No 18
>KOG0423 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=4.5e-28 Score=215.11 Aligned_cols=147 Identities=29% Similarity=0.555 Sum_probs=139.1
Q ss_pred CCCChhHHHHHHHHHHHHHhcCCCCeEEEeecCCcceEEEEEecCCCCCcCCCeEEEEEeCCCCCCCCCCeeeecccccc
Q 018254 48 DHFPAGSHKKIMQEWKILEKHLPESIFVRVYENRIDLLRAVIVGTAGTPYHDGLFFFDLAFPADYPNHPPMVHYRSFGLR 127 (359)
Q Consensus 48 ~~~ss~a~kRL~kEl~~L~k~~p~gI~v~~~e~~l~~w~~~I~GP~gTPYegG~F~f~I~fP~dYP~~PP~V~f~T~i~r 127 (359)
..+.+...|.|.+|++.|..++|+||.|.+.++|+....+.|.||.||||++|+|+..+.+..|||++||+-+|+|+||
T Consensus 5 enlpp~vik~~~kEl~~l~~~PPdGIKV~~NeeD~tdiqa~IeGP~GTPYa~GlFRmKL~L~kDFP~sPPKgYFlTKIF- 83 (223)
T KOG0423|consen 5 ENLPPNVIKQLAKELKSLDESPPDGIKVVVNEEDFTDIQADIEGPVGTPYANGLFRMKLALSKDFPHSPPKGYFLTKIF- 83 (223)
T ss_pred cCCChHHHHHHHHHHHhcccCCCCceEEecChHHhHHHHhhccCCCCCccccceeeehhhhcCCCCCCCCcceeeeeec-
Confidence 4566789999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred cCCCcCCCCceeeccccccCCCCCCCcccCcccHHHHHHHHHHHhccCCCCCCCCCCCCchhhhhHHHcHHHHHHHHHHH
Q 018254 128 LNPNLYANGRVCLSLLNTWTGKKSEKWNPDESTVLQVLVSIQALVLNEKPYFNEPGHGMWPGRSIWEKKSTAYNEDVFIL 207 (359)
Q Consensus 128 fHPNVy~~GkVCLslL~tw~G~~~e~WsP~~stI~qVL~sIq~Ll~~p~Py~neP~~~~~~a~~~~~~~~~~Yne~v~~~ 207 (359)
||||-.+|.||...|. .+|+|+. .|..||+.|..||..|+| .+++|+ +|..+..++..+|.+.+|.+
T Consensus 84 -HPNVaaNGEICVNtLK-------kDW~p~L-GirHvLltikCLLI~PnP--ESALNE--eAGkmLLEnYdeYa~rARl~ 150 (223)
T KOG0423|consen 84 -HPNVAANGEICVNTLK-------KDWNPSL-GIRHVLLTIKCLLIEPNP--ESALNE--EAGKMLLENYDEYARRARLY 150 (223)
T ss_pred -cCCcccCceehhhhhh-------cccCccc-chhhHhhhhheeeecCCh--HHHHhH--HHHHHHHHhHHHHHHHHHHH
Confidence 9999999999999998 7999999 999999999999999999 999999 78899999999999888655
Q ss_pred H
Q 018254 208 S 208 (359)
Q Consensus 208 t 208 (359)
+
T Consensus 151 T 151 (223)
T KOG0423|consen 151 T 151 (223)
T ss_pred H
Confidence 4
No 19
>KOG0420 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=2.8e-26 Score=203.61 Aligned_cols=141 Identities=21% Similarity=0.444 Sum_probs=122.0
Q ss_pred hhHHHHHHHHHHHHHhcCCCCeEEEe--ecCCcce--EEEEEecCCCCCcCCCeEEEEEeCCCCCCCCCCeeeecccccc
Q 018254 52 AGSHKKIMQEWKILEKHLPESIFVRV--YENRIDL--LRAVIVGTAGTPYHDGLFFFDLAFPADYPNHPPMVHYRSFGLR 127 (359)
Q Consensus 52 s~a~kRL~kEl~~L~k~~p~gI~v~~--~e~~l~~--w~~~I~GP~gTPYegG~F~f~I~fP~dYP~~PP~V~f~T~i~r 127 (359)
|.++-||++|+.+| ++|+++.... ..++.+. ++.+|. |+.+.|.||.|.|.+.+|+.||+.||+|.+.|++|
T Consensus 27 s~a~lrl~~di~el--nLp~t~~~s~~~~~~d~~~~~~elti~-PdEGyY~gGkf~F~~~v~~~Yp~~PPKVkCltkV~- 102 (184)
T KOG0420|consen 27 SAALLRLKKDILEL--NLPPTCSLSFPDSPDDLNNLEFELTIT-PDEGYYQGGKFRFKFKVPNAYPHEPPKVKCLTKVY- 102 (184)
T ss_pred cHHHHHHHhhhhhc--cCCCccccccccCCcccccceEEEEEc-cCcceecCceEEEEEECCCCCCCCCCeeeeeeccc-
Confidence 55666776666555 7888777432 2344444 788887 99999999999999999999999999999999998
Q ss_pred cCCCcCCCCceeeccccccCCCCCCCcccCcccHHHHHHHHHHHhccCCCCCCCCCCCCchhhhhHHHcHHHHHHHHHHH
Q 018254 128 LNPNLYANGRVCLSLLNTWTGKKSEKWNPDESTVLQVLVSIQALVLNEKPYFNEPGHGMWPGRSIWEKKSTAYNEDVFIL 207 (359)
Q Consensus 128 fHPNVy~~GkVCLslL~tw~G~~~e~WsP~~stI~qVL~sIq~Ll~~p~Py~neP~~~~~~a~~~~~~~~~~Yne~v~~~ 207 (359)
||||+.+|.|||+||. ++|+|.. +|.+|+.+++.||.+|++ ++|+|- +|+..+..+++.|+.+||..
T Consensus 103 -HPNId~~GnVCLnILR-------edW~P~l-nL~sIi~GL~~LF~epn~--eDpLN~--eAA~~l~~n~e~F~~~Vr~~ 169 (184)
T KOG0420|consen 103 -HPNIDLDGNVCLNILR-------EDWRPVL-NLNSIIYGLQFLFLEPNP--EDPLNK--EAAAVLKSNREGFENNVRRA 169 (184)
T ss_pred -cCCcCCcchHHHHHHH-------hcCcccc-chHHHHHHHHHHhccCCC--cccccH--HHHHHHHhCHHHHHHHHHHH
Confidence 9999999999999998 8999998 999999999999999997 999998 78999999999999998754
Q ss_pred HH
Q 018254 208 SC 209 (359)
Q Consensus 208 t~ 209 (359)
..
T Consensus 170 m~ 171 (184)
T KOG0420|consen 170 MS 171 (184)
T ss_pred Hh
Confidence 43
No 20
>KOG0416 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=3e-25 Score=196.77 Aligned_cols=143 Identities=21% Similarity=0.442 Sum_probs=129.9
Q ss_pred HHHHHHHHHHHHHhcCCCCeEEEeecCCcceEEEEEecCCCCCcCCCeEEEEEeCCCCCCCCCCeeeecccccccCCCcC
Q 018254 54 SHKKIMQEWKILEKHLPESIFVRVYENRIDLLRAVIVGTAGTPYHDGLFFFDLAFPADYPNHPPMVHYRSFGLRLNPNLY 133 (359)
Q Consensus 54 a~kRL~kEl~~L~k~~p~gI~v~~~e~~l~~w~~~I~GP~gTPYegG~F~f~I~fP~dYP~~PP~V~f~T~i~rfHPNVy 133 (359)
.-|||-.|...|..+ +-.|...++.+..+.+.+.||.+|||+||++++.|.+|++||++.|.|.|.++|| ||||+
T Consensus 4 ~~rRid~Dv~KL~~s---~yeV~~ind~m~ef~V~f~GP~ds~YegGvWkv~V~lPd~YP~KSPSIGFvnKIf--HPNID 78 (189)
T KOG0416|consen 4 GKRRIDTDVMKLLMS---DYEVTIINDGMQEFYVKFHGPKDSPYEGGVWKVRVELPDNYPFKSPSIGFVNKIF--HPNID 78 (189)
T ss_pred cccchhhHHHHHHhc---CCeEEEecCcccEEEEEeeCCCCCcccCceEEEEEECCCCCCCCCCcccceeecc--CCCch
Confidence 357888888777653 4468889999999999999999999999999999999999999999999999987 99999
Q ss_pred -CCCceeeccccccCCCCCCCcccCcccHHHHHHHH-HHHhccCCCCCCCCCCCCchhhhhHHHcHHHHHHHHHHHHHHH
Q 018254 134 -ANGRVCLSLLNTWTGKKSEKWNPDESTVLQVLVSI-QALVLNEKPYFNEPGHGMWPGRSIWEKKSTAYNEDVFILSCKS 211 (359)
Q Consensus 134 -~~GkVCLslL~tw~G~~~e~WsP~~stI~qVL~sI-q~Ll~~p~Py~neP~~~~~~a~~~~~~~~~~Yne~v~~~t~k~ 211 (359)
.+|.|||++++ ..|+|.+ .+..|+.++ =.||..||| .+|+|. +|+.++..+++.|+++|+.+..++
T Consensus 79 e~SGsVCLDViN-------QtWSp~y-DL~NIfetfLPQLL~YPNp--~DPLN~--eAAal~l~~~~~Y~~~v~eY~~kY 146 (189)
T KOG0416|consen 79 EASGSVCLDVIN-------QTWSPLY-DLVNIFETFLPQLLRYPNP--SDPLNG--EAAALYLRDPEEYEEKVKEYIKKY 146 (189)
T ss_pred hccCccHHHHHh-------hhhhHHH-HHHHHHHHHhHHHhcCCCC--CCCccc--HHHHHHhcCHHHHHHHHHHHHHHh
Confidence 99999999998 7899999 899998876 589999999 999999 789999999999999999888776
Q ss_pred HH
Q 018254 212 MT 213 (359)
Q Consensus 212 m~ 213 (359)
+.
T Consensus 147 A~ 148 (189)
T KOG0416|consen 147 AT 148 (189)
T ss_pred cC
Confidence 54
No 21
>KOG0427 consensus Ubiquitin conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=3.6e-25 Score=188.96 Aligned_cols=122 Identities=23% Similarity=0.507 Sum_probs=114.1
Q ss_pred CCCCCCCChhHHHHHHHHHHHHHhcCCCCeEEEeecCCcceEEEEEecCCCCCcCCCeEEEEEeCCCCCCCCCCeeeecc
Q 018254 44 KNGRDHFPAGSHKKIMQEWKILEKHLPESIFVRVYENRIDLLRAVIVGTAGTPYHDGLFFFDLAFPADYPNHPPMVHYRS 123 (359)
Q Consensus 44 ~~~~~~~ss~a~kRL~kEl~~L~k~~p~gI~v~~~e~~l~~w~~~I~GP~gTPYegG~F~f~I~fP~dYP~~PP~V~f~T 123 (359)
.++++.++..+.+|||+|+.+|+.++|.|+.++ ..+++..|.+-+.|.+||.|+|-.|.+.+.||+.||+..|.|.|..
T Consensus 6 ~~~rk~ls~~at~RLqKEl~e~q~~pP~G~~~~-v~dnlqqWii~v~Ga~GTLYa~e~~qLq~~F~~~YP~esPqVmF~~ 84 (161)
T KOG0427|consen 6 APSRKALSKIATNRLQKELSEWQNNPPTGFKHR-VTDNLQQWIIEVTGAPGTLYANETYQLQVEFPEHYPMESPQVMFVG 84 (161)
T ss_pred cchHHHHHHHHHHHHHHHHHHHhcCCCCcceee-cccchheeEEEEecCCceeecCcEEEEEEecCCCCCCCCCeEEEec
Confidence 355677788899999999999999999999999 4578999999999999999999999999999999999999999999
Q ss_pred cccccCCCcCCCCceeeccccccCCCCCCCcccCcccHHHHHHHHHHHhccC
Q 018254 124 FGLRLNPNLYANGRVCLSLLNTWTGKKSEKWNPDESTVLQVLVSIQALVLNE 175 (359)
Q Consensus 124 ~i~rfHPNVy~~GkVCLslL~tw~G~~~e~WsP~~stI~qVL~sIq~Ll~~p 175 (359)
++ ..||+||.+|.|||+||. +.|+|+. ++.+|.+||.+||...
T Consensus 85 ~~-P~HPHiYSNGHICL~iL~-------d~WsPAm-sv~SvClSIlSMLSSs 127 (161)
T KOG0427|consen 85 PA-PLHPHIYSNGHICLDILY-------DSWSPAM-SVQSVCLSILSMLSSS 127 (161)
T ss_pred CC-CCCCceecCCeEEEEeec-------ccCCcch-hhHHHHHHHHHHHccC
Confidence 96 689999999999999997 8999998 9999999999999864
No 22
>KOG0428 consensus Non-canonical ubiquitin conjugating enzyme 1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.83 E-value=1.5e-20 Score=175.29 Aligned_cols=142 Identities=21% Similarity=0.399 Sum_probs=116.4
Q ss_pred ChhHHHHHHHHHHHHHhcCCCCeEEEeecCCcceEEEEEecCCCCCcCCCeEEEEEeCCCCCCCCCCeeeecccccccCC
Q 018254 51 PAGSHKKIMQEWKILEKHLPESIFVRVYENRIDLLRAVIVGTAGTPYHDGLFFFDLAFPADYPNHPPMVHYRSFGLRLNP 130 (359)
Q Consensus 51 ss~a~kRL~kEl~~L~k~~p~gI~v~~~e~~l~~w~~~I~GP~gTPYegG~F~f~I~fP~dYP~~PP~V~f~T~i~rfHP 130 (359)
...++|||++|.++|+ ++.+-....+.|+|+++|+.+|.||.||-|+||+|+.+|.||.|||++||.+..+|+ |.
T Consensus 9 KnpaVkRlmkEa~El~-~Ptd~yha~plEdNlFEWhFtiRGp~dtdFeGGiYHGRI~lPadYPmKPPs~iLLTp----NG 83 (314)
T KOG0428|consen 9 KNPAVKRLMKEAAELK-DPTDHYHAQPLEDNLFEWHFTIRGPPDTDFEGGIYHGRIVLPADYPMKPPSIILLTP----NG 83 (314)
T ss_pred cCHHHHHHHHHHHHhc-CchhhhhhccchhceeeEEEEeeCCCCCCccCceeeeeEecCCCCCCCCCeEEEEcC----CC
Confidence 3568999999999998 677778899999999999999999999999999999999999999999999999998 55
Q ss_pred CcCCCCceeeccccccCCCCCCCcccCcccHHHHHHHHHHHhccCCCCCCCCCCCCchhhhhH-HHcHHHHHHHHHHHHH
Q 018254 131 NLYANGRVCLSLLNTWTGKKSEKWNPDESTVLQVLVSIQALVLNEKPYFNEPGHGMWPGRSIW-EKKSTAYNEDVFILSC 209 (359)
Q Consensus 131 NVy~~GkVCLslL~tw~G~~~e~WsP~~stI~qVL~sIq~Ll~~p~Py~neP~~~~~~a~~~~-~~~~~~Yne~v~~~t~ 209 (359)
.+--+-+|||||.+ .|+|.|.|++ +|...|+.|.++|-. .|.-+ -|+-.| .+.++....+.+.+-|
T Consensus 84 RFE~nkKiCLSISg----yHPEtWqPSW-SiRTALlAlIgFmPt------~p~GA--lGSlDYpp~ERr~LAkkS~e~~c 150 (314)
T KOG0428|consen 84 RFEVNKKICLSISG----YHPETWQPSW-SIRTALLALIGFMPT------KPEGA--LGSLDYPPEERRALAKKSQEFCC 150 (314)
T ss_pred ceeeCceEEEEecC----CCccccCcch-hHHHHHHHHHccccC------CCCCc--cccCcCCHHHHHHHHHhhcccCc
Confidence 55667799999985 7899999999 899999999999832 33222 133333 3445555555665555
Q ss_pred H
Q 018254 210 K 210 (359)
Q Consensus 210 k 210 (359)
+
T Consensus 151 k 151 (314)
T KOG0428|consen 151 K 151 (314)
T ss_pred c
Confidence 4
No 23
>KOG0429 consensus Ubiquitin-conjugating enzyme-related protein Ft1, involved in programmed cell death [Posttranslational modification, protein turnover, chaperones]
Probab=99.78 E-value=4.8e-18 Score=156.45 Aligned_cols=154 Identities=19% Similarity=0.325 Sum_probs=132.5
Q ss_pred HHHHHHHHHHhcCCCCeEEEeecCCcceEEEEEecCCCCCcCCCeEEEEEeCCCCCCC--CCCeeeecccccccCCCcC-
Q 018254 57 KIMQEWKILEKHLPESIFVRVYENRIDLLRAVIVGTAGTPYHDGLFFFDLAFPADYPN--HPPMVHYRSFGLRLNPNLY- 133 (359)
Q Consensus 57 RL~kEl~~L~k~~p~gI~v~~~e~~l~~w~~~I~GP~gTPYegG~F~f~I~fP~dYP~--~PP~V~f~T~i~rfHPNVy- 133 (359)
.|..|+..+.+..-+||||.|+-.+-.+|.++|++-. +.|.||+|+|.|.+|++||. .-|+|.|.+.++ ||.|.
T Consensus 23 ~llAEf~lV~~ekL~gIyviPSyan~l~WFGViFvr~-GiyaggVFRFtIliPdnfPdd~dlPrvvF~q~vf--HP~icp 99 (258)
T KOG0429|consen 23 ALLAEFVLVCREKLDGIYVIPSYANKLLWFGVIFVRK-GIYAGGVFRFTILIPDNFPDDSDLPRVVFEQSVF--HPLICP 99 (258)
T ss_pred HHHHHHHHHHhccCCceEEcccccccceEEEEEEEec-ccccCceEEEEEEcCccCCCcCCCCeEEeecccc--ccccCC
Confidence 4566666677788899999999999999999999755 56999999999999999995 679999999976 99998
Q ss_pred CCCceeeccccccCCCCCCCcccCcccHHHHHHHHHHHhccCCCCCCCCCCCCchhhhhHHHcHHHHHHHHHHHHHHHHH
Q 018254 134 ANGRVCLSLLNTWTGKKSEKWNPDESTVLQVLVSIQALVLNEKPYFNEPGHGMWPGRSIWEKKSTAYNEDVFILSCKSMT 213 (359)
Q Consensus 134 ~~GkVCLslL~tw~G~~~e~WsP~~stI~qVL~sIq~Ll~~p~Py~neP~~~~~~a~~~~~~~~~~Yne~v~~~t~k~m~ 213 (359)
.++.+|++-.- ..|.-..+.|++||+.||.++.+|+...++-.|. +|+.+|++++..|.++|+.++.-+-.
T Consensus 100 ~skeLdl~raf-------~eWRk~ehhiwqvL~ylqriF~dpd~si~kl~N~--eAa~l~~k~r~ef~~rvqe~vk~sr~ 170 (258)
T KOG0429|consen 100 KSKELDLNRAF-------PEWRKEEHHIWQVLVYLQRIFYDPDVSIDKLINP--EAAVLYKKHRDEFRERVQECVKASRS 170 (258)
T ss_pred CccceeHhhhh-------hhhhccccHHHHHHHHHHHHhcCcccchhhhcCh--HHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 88999998765 3499998999999999999999999855444454 89999999999999999998866555
Q ss_pred HHHhCCCCC
Q 018254 214 FLLRNPPKN 222 (359)
Q Consensus 214 ~~l~~pp~~ 222 (359)
.++..||..
T Consensus 171 ~iyD~ppte 179 (258)
T KOG0429|consen 171 MIYDEPPTE 179 (258)
T ss_pred HhcCCCCCC
Confidence 567788876
No 24
>KOG0896 consensus Ubiquitin-conjugating enzyme E2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.01 E-value=6.9e-10 Score=95.87 Aligned_cols=111 Identities=17% Similarity=0.304 Sum_probs=83.0
Q ss_pred HHHHHHHHHHHhcCCCCeEEEeec--CC--cceEEEEEecCCCCCcCCCeEEEEEeCCCCCCCCCCeeeecccccccCCC
Q 018254 56 KKIMQEWKILEKHLPESIFVRVYE--NR--IDLLRAVIVGTAGTPYHDGLFFFDLAFPADYPNHPPMVHYRSFGLRLNPN 131 (359)
Q Consensus 56 kRL~kEl~~L~k~~p~gI~v~~~e--~~--l~~w~~~I~GP~gTPYegG~F~f~I~fP~dYP~~PP~V~f~T~i~rfHPN 131 (359)
-||.+|+..-++-.-++..-.-.+ +| +..|-+.|.||+.|+||+-+|.+.|.+.++||..||.|+|.|++. -+-
T Consensus 8 frlleele~g~kg~g~~~~s~gl~d~~dmtl~rWtg~IiGPprT~yEnRiysLKI~Cgp~YPe~PP~vrf~tkin--m~g 85 (138)
T KOG0896|consen 8 FRLLEELEEGEKGIGDGTVSWGLEDDDDMTLTRWTGTIIGPPRTMYENRIYSLKIECGPKYPELPPTVRFGTKIN--MNG 85 (138)
T ss_pred hhhhhhhccccccccCceeeccccCCCcceEeeeccceeCCCCcccccceeeEEEecCCCCCCCCceeEEEEEee--ecc
Confidence 357788777666555554433333 33 457999999999999999999999999999999999999999974 233
Q ss_pred cC-CCCceeeccccccCCCCCCCcccCcccHHHHHHHHHHHhcc
Q 018254 132 LY-ANGRVCLSLLNTWTGKKSEKWNPDESTVLQVLVSIQALVLN 174 (359)
Q Consensus 132 Vy-~~GkVCLslL~tw~G~~~e~WsP~~stI~qVL~sIq~Ll~~ 174 (359)
+. .+|.|--..+.+ -++|.-++ ++..||.++.-+++.
T Consensus 86 vn~~~g~Vd~~~i~~-----L~~W~~~y-~~~~vl~~lr~~m~~ 123 (138)
T KOG0896|consen 86 VNSSNGVVDPRDITV-----LARWQRSY-SIKMVLGQLRKEMMS 123 (138)
T ss_pred cccCCCccCccccch-----hhcccccc-hhhHHHHhhhHHHHH
Confidence 43 666664322221 16899998 899999999876654
No 25
>PF05743 UEV: UEV domain; InterPro: IPR008883 The N-terminal ubiquitin E2 variant (UEV) domain is ~145 amino acid residues in length and shows significant sequence similarity to E2 ubiquitin ligases but is unable to catalyze ubiquitin transfer as it lacks the active site cysteine that forms the transient thioester bond with the C terminus of ubiquitin (Ub). Nevertheless, at least some UEVs have retained the ability to bind Ub, and appear to act either as cofactors in ubiquitylation reactions, or as ubiquitin sensors. UEV domains also frequently contain other protein recognition motifs, and may generally serve to couple protein and Ub binding functions to facilitate the formation of multiprotein complexes [, , , ]. The UEV domain consists of a twisted four-stranded antiparallel beta-sheet having a meander topology, with four alpha-helices packed against one face of the sheet. The UEV fold is generally similar to canonical E2 ligases in the hydrophobic core and 'active site' regions, but differs significantly at both its N- and C-termini [, ]. The UEV domain is found in the eukaryotic tumour susceptibility gene 101 protein (TSG101). Altered transcripts of this gene have been detected in sporadic breast cancers and many other Homo sapiens malignancies. However, the involvement of this gene in neoplastic transformation and tumourigenesis is still elusive. TSG101 is required for normal cell function of embryonic and adult tissues but this gene is not a tumour suppressor for sporadic forms of breast cancer [].; GO: 0006464 protein modification process, 0015031 protein transport; PDB: 3R3Q_A 3R42_A 1UZX_A 3OBX_A 3OBS_A 3P9H_A 2F0R_A 3P9G_A 3OBQ_A 3OBU_A ....
Probab=98.04 E-value=1.7e-05 Score=68.13 Aligned_cols=107 Identities=25% Similarity=0.477 Sum_probs=65.6
Q ss_pred HHHHHHHhcCCCCeEEE----eecCCcceEEEEEecCCCCCcCCCeE--EEEEeCCCCCCCCCCeeeecccc---cccCC
Q 018254 60 QEWKILEKHLPESIFVR----VYENRIDLLRAVIVGTAGTPYHDGLF--FFDLAFPADYPNHPPMVHYRSFG---LRLNP 130 (359)
Q Consensus 60 kEl~~L~k~~p~gI~v~----~~e~~l~~w~~~I~GP~gTPYegG~F--~f~I~fP~dYP~~PP~V~f~T~i---~rfHP 130 (359)
+|+..+.+.-| .+..+ ..++-....-..+.|----.|.|..| -+.|.+|.+||..||.|...... .+-+.
T Consensus 3 ~d~~~~l~~y~-~L~p~~~~ft~~~G~~~~LL~L~Gtipi~y~g~~y~iPi~Iwlp~~yP~~pP~v~v~pt~~m~I~~~~ 81 (121)
T PF05743_consen 3 NDVLSVLQNYP-SLRPRTDTFTFNDGSSKLLLCLYGTIPITYKGSTYNIPICIWLPENYPYSPPIVYVRPTPSMVIKPSH 81 (121)
T ss_dssp HHHHHHHHHST-TEEEEEEEEESTTSTEEEEEEEEEEEEECCTTCCEEEEEEEEE-TTTTTSSSEEEE-GCCTECCGGCC
T ss_pred HHHHHHHHHCC-CCcEeeeeeEcCCCChheEEEEecCcccccCCcccceeEEEEEcccCCCCCCEEEEeCCCCCCcCCCC
Confidence 45555555544 33322 22332222223333322235888887 57788999999999999776542 23355
Q ss_pred CcCCCCceeeccccccCCCCCCCcccCcccHHHHHHHHHHHhccC
Q 018254 131 NLYANGRVCLSLLNTWTGKKSEKWNPDESTVLQVLVSIQALVLNE 175 (359)
Q Consensus 131 NVy~~GkVCLslL~tw~G~~~e~WsP~~stI~qVL~sIq~Ll~~p 175 (359)
+|+.+|+|.+..|. +|++..|++.+++..++..|...
T Consensus 82 ~Vd~~G~v~~pyL~--------~W~~~~s~L~~lv~~l~~~F~~~ 118 (121)
T PF05743_consen 82 HVDSNGRVYLPYLQ--------NWNPPSSNLVDLVQELQAVFSEE 118 (121)
T ss_dssp CB-TTSBB-SHHHH--------T--TTTS-HHHHHHHHHHCCCHS
T ss_pred eECCCCCEeCchhc--------cCCCCCCCHHHHHHHHHHHHhHc
Confidence 99999999999995 78886679999999999888653
No 26
>PF14461 Prok-E2_B: Prokaryotic E2 family B
Probab=98.04 E-value=9.3e-06 Score=70.44 Aligned_cols=69 Identities=29% Similarity=0.619 Sum_probs=60.5
Q ss_pred CCCeEEEEEeCCCCCCCCCCeeeecccc-cccCCCcCCCCceee---ccccccCCCCCCCcccCcccHHHHHHHHHHHhc
Q 018254 98 HDGLFFFDLAFPADYPNHPPMVHYRSFG-LRLNPNLYANGRVCL---SLLNTWTGKKSEKWNPDESTVLQVLVSIQALVL 173 (359)
Q Consensus 98 egG~F~f~I~fP~dYP~~PP~V~f~T~i-~rfHPNVy~~GkVCL---slL~tw~G~~~e~WsP~~stI~qVL~sIq~Ll~ 173 (359)
.|+.|.++|.||++||..||.|....+. +.+=|+|+.+|.+|+ ++.- +.|+|.. .+.++|.+++.+|.
T Consensus 34 ~~~~~~l~l~~p~~FP~~pp~v~l~d~~~~~~~pHv~~~G~LCl~~~~~~~-------D~~~P~~-~~~~~l~~a~~lL~ 105 (133)
T PF14461_consen 34 GGGPFPLRLVFPDDFPYLPPRVYLEDPKQFPLLPHVESDGKLCLLDEELVL-------DPWDPEG-IIADCLERAIRLLE 105 (133)
T ss_pred CCeEEEEEEEECCcccCcCCEEEecCccccCccCeEcCCCeEEEecCCccc-------CccCHHH-HHHHHHHHHHHHHH
Confidence 6899999999999999999999998654 236899999999999 5553 8999997 89999999999997
Q ss_pred c
Q 018254 174 N 174 (359)
Q Consensus 174 ~ 174 (359)
+
T Consensus 106 ~ 106 (133)
T PF14461_consen 106 D 106 (133)
T ss_pred H
Confidence 3
No 27
>PF08694 UFC1: Ubiquitin-fold modifier-conjugating enzyme 1; InterPro: IPR014806 Ubiquitin-like (UBL) post-translational modifiers are covalently linked to most, if not all, target protein(s) through an enzymatic cascade analogous to ubiquitylation, consisting of E1 (activating), E2 (conjugating), and E3 (ligating) enzymes. Ubiquitin-fold modifier 1 (Ufm1) a ubiquitin-like protein is activated by a novel E1-like enzyme, Uba5, by forming a high-energy thioester bond. Activated Ufm1 is then transferred to its cognate E2-like enzyme, Ufc1, in a similar thioester linkage. This family represents the E2-like enzyme [].; PDB: 2Z6P_A 2K07_A 2Z6O_A 3EVX_D 3KPA_A.
Probab=97.79 E-value=2.5e-05 Score=68.65 Aligned_cols=86 Identities=17% Similarity=0.343 Sum_probs=45.0
Q ss_pred hhHHHHHHHHHHHHHhcCCCCeEEEeecCCcceEEEEEecCCCCCcCCCe----------EEEEEeCCCCCCCCCCeeee
Q 018254 52 AGSHKKIMQEWKILEKHLPESIFVRVYENRIDLLRAVIVGTAGTPYHDGL----------FFFDLAFPADYPNHPPMVHY 121 (359)
Q Consensus 52 s~a~kRL~kEl~~L~k~~p~gI~v~~~e~~l~~w~~~I~GP~gTPYegG~----------F~f~I~fP~dYP~~PP~V~f 121 (359)
..|..||..|+..|.+ ||....++-..|.-+=.-++||-|.|-+ |.|.+.+|..||..||.+..
T Consensus 23 ~~W~~RLKEEy~aLI~------Yv~~nK~~DndWF~lesn~~GT~W~GkCW~~h~l~kYEF~~eFdIP~tYP~t~pEi~l 96 (161)
T PF08694_consen 23 DLWVQRLKEEYQALIK------YVENNKENDNDWFRLESNKEGTRWFGKCWYIHNLLKYEFDLEFDIPVTYPTTAPEIAL 96 (161)
T ss_dssp HHHHHHHHHHHHHHHH------HHHHHHHTT---EEEEE-TTSSEEEEEEEEEETTEEEEEEEEEE--TTTTTS----B-
T ss_pred HHHHHHHHHHHHHHHH------HHHhcccccCCeEEeccCCCCCccccEEEEEeeeeeEEEeeecCCCccCCCCCcceec
Confidence 6799999999999855 2222222223333333345555555543 44556679999999999987
Q ss_pred cccccccCCCcCCCCceeecccc
Q 018254 122 RSFGLRLNPNLYANGRVCLSLLN 144 (359)
Q Consensus 122 ~T~i~rfHPNVy~~GkVCLslL~ 144 (359)
-.-. .--.-.|..|+|||++-.
T Consensus 97 PeLd-GKTaKMYRGGkIClt~HF 118 (161)
T PF08694_consen 97 PELD-GKTAKMYRGGKICLTDHF 118 (161)
T ss_dssp GGGT-TT-SSBCCCCBB---TTH
T ss_pred cccC-CchhhhhcCceEeeeccc
Confidence 6532 125678999999998753
No 28
>KOG0897 consensus Predicted ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=97.63 E-value=0.00012 Score=62.09 Aligned_cols=67 Identities=19% Similarity=0.361 Sum_probs=53.1
Q ss_pred EEEEeCCCCCCCCCCeeeecccccccCCCcCCCCceeeccccccCCCCCCCcccCcccHHHHHHHHHHHhccCCC
Q 018254 103 FFDLAFPADYPNHPPMVHYRSFGLRLNPNLYANGRVCLSLLNTWTGKKSEKWNPDESTVLQVLVSIQALVLNEKP 177 (359)
Q Consensus 103 ~f~I~fP~dYP~~PP~V~f~T~i~rfHPNVy~~GkVCLslL~tw~G~~~e~WsP~~stI~qVL~sIq~Ll~~p~P 177 (359)
.+.+.|+++||+.||.++-..+.. -..-+-.+|.||+.||.+ ++|+..+ +|..++++|-+.+-.-.-
T Consensus 14 ll~~~f~~~fp~~ppf~rvv~p~~-~~Gyvl~ggAIcmellt~------qgwssay-~Ve~vi~qiaatlVkG~~ 80 (122)
T KOG0897|consen 14 LLLDIFDDNFPFMPPFPRVVKPLE-DEGYVLEGGAICMELLTK------QGWSSAY-EVERVIMQIAATLVKGGA 80 (122)
T ss_pred EeeeecccCCCCCCCcceeeeecc-cCCEEecchhhHHHHHcc------ccccchh-hHHHHHHHHHHHhhccce
Confidence 456789999999999998776532 122234899999999984 9999987 999999999998876443
No 29
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.21 E-value=0.0012 Score=65.47 Aligned_cols=84 Identities=21% Similarity=0.488 Sum_probs=68.0
Q ss_pred EecCCCCCcCCCeEE--EEEeCCCCCCCCCCeeeecccc---cccCCCcCCCCceeeccccccCCCCCCCcccCcccHHH
Q 018254 89 IVGTAGTPYHDGLFF--FDLAFPADYPNHPPMVHYRSFG---LRLNPNLYANGRVCLSLLNTWTGKKSEKWNPDESTVLQ 163 (359)
Q Consensus 89 I~GP~gTPYegG~F~--f~I~fP~dYP~~PP~V~f~T~i---~rfHPNVy~~GkVCLslL~tw~G~~~e~WsP~~stI~q 163 (359)
+.|---+||.|.+|- +.|.+++.||..||.|....+- ...|-+|+.+|+|.|..|. .|.|..|++..
T Consensus 55 ~~GTIp~~~~G~tYnIPV~iWlldtyP~~pP~c~VnPT~~M~ik~~~hVd~nG~V~LPYLh--------~W~~pssdLv~ 126 (365)
T KOG2391|consen 55 LDGTIPVPYQGVTYNIPVIIWLLDTYPYYPPICYVNPTSTMIIKVHEHVDPNGKVYLPYLH--------NWDPPSSDLVG 126 (365)
T ss_pred ccCcccccccCCcccceEEEEecccCCCCCCeEEecCCchhhhHHhhccCCCCeEechhhc--------cCCCccchHHH
Confidence 344444688888874 6788999999999999776542 2338999999999999996 79998889999
Q ss_pred HHHHHHHHhccCCCCCC
Q 018254 164 VLVSIQALVLNEKPYFN 180 (359)
Q Consensus 164 VL~sIq~Ll~~p~Py~n 180 (359)
++.-+.+.|..+.|.|.
T Consensus 127 Liq~l~a~f~~~pP~ys 143 (365)
T KOG2391|consen 127 LIQELIAAFSEDPPVYS 143 (365)
T ss_pred HHHHHHHHhcCCCcccc
Confidence 99999999988777654
No 30
>KOG3357 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.72 E-value=0.0018 Score=56.40 Aligned_cols=85 Identities=18% Similarity=0.364 Sum_probs=57.9
Q ss_pred hhHHHHHHHHHHHHHhcCCCCeEEEeecCCcceEEEEEecCCCCCcCCCe--------EEEEE--eCCCCCCCCCCeeee
Q 018254 52 AGSHKKIMQEWKILEKHLPESIFVRVYENRIDLLRAVIVGTAGTPYHDGL--------FFFDL--AFPADYPNHPPMVHY 121 (359)
Q Consensus 52 s~a~kRL~kEl~~L~k~~p~gI~v~~~e~~l~~w~~~I~GP~gTPYegG~--------F~f~I--~fP~dYP~~PP~V~f 121 (359)
..|..||..|++.|.. +|.-..++-..|.-+-.-++||-|-|.+ |.||| .+|-.||...|.+..
T Consensus 26 ~~wvqrlkeey~sli~------yvqnnk~~d~dwfrlesn~egtrwfgkcwy~hnllkyefdvefdipityp~tapeial 99 (167)
T KOG3357|consen 26 DLWVQRLKEEYQSLIA------YVQNNKSNDNDWFRLESNKEGTRWFGKCWYVHNLLKYEFDVEFDIPITYPTTAPEIAL 99 (167)
T ss_pred hHHHHHHHHHHHHHHH------HHHhCcccCCcceEeccCccccceehhhhHhhhhhhheeeeeeccccccCCCCccccc
Confidence 5699999999999854 2333333444555445668888888765 44554 559999999999875
Q ss_pred cccccccCCCcCCCCceeeccc
Q 018254 122 RSFGLRLNPNLYANGRVCLSLL 143 (359)
Q Consensus 122 ~T~i~rfHPNVy~~GkVCLslL 143 (359)
..-. .-.--.|..|+|||+.-
T Consensus 100 peld-gktakmyrggkiclt~h 120 (167)
T KOG3357|consen 100 PELD-GKTAKMYRGGKICLTDH 120 (167)
T ss_pred cccC-chhhhhhcCceEeeccc
Confidence 4321 11345679999999643
No 31
>PF14462 Prok-E2_E: Prokaryotic E2 family E
Probab=96.04 E-value=0.061 Score=46.56 Aligned_cols=97 Identities=15% Similarity=0.274 Sum_probs=64.5
Q ss_pred CeEEEeecCCcceEEEEEec--CCCCCcCCCeEEEEEeCCCCCCCCCCeeeecccccccCCCcCCCCce--eeccccc--
Q 018254 72 SIFVRVYENRIDLLRAVIVG--TAGTPYHDGLFFFDLAFPADYPNHPPMVHYRSFGLRLNPNLYANGRV--CLSLLNT-- 145 (359)
Q Consensus 72 gI~v~~~e~~l~~w~~~I~G--P~gTPYegG~F~f~I~fP~dYP~~PP~V~f~T~i~rfHPNVy~~GkV--CLslL~t-- 145 (359)
|+......+.-..|-+ |.| .+.+.|....-.+-|.+|+.||..+|.+.|..+.+ .. -..|.| |-+...+
T Consensus 13 g~~~E~v~eg~~~~li-i~~~~LP~G~y~~~~~dili~iP~gYP~~~~DmfY~~P~L--~~--~~G~~iP~~~~~~~~~~ 87 (122)
T PF14462_consen 13 GLRWETVTEGGRRWLI-IKGYPLPEGKYNHNEVDILILIPPGYPDAPLDMFYVYPPL--KL--ADGGPIPNAAEVTQTFD 87 (122)
T ss_pred CceEEEEEeCCccEEE-EeCCcCCCCccCccceEEEEECCCCCCCCCCCcEEECCce--Ec--cCCCcCCchhcchhhcC
Confidence 4444443333333433 544 44556999999999999999999999887766543 11 022344 5544443
Q ss_pred ---cC--CCCCCCcccCcccHHHHHHHHHHHhc
Q 018254 146 ---WT--GKKSEKWNPDESTVLQVLVSIQALVL 173 (359)
Q Consensus 146 ---w~--G~~~e~WsP~~stI~qVL~sIq~Ll~ 173 (359)
|. +.|...|+|...+|.+.|.-|...|.
T Consensus 88 G~~wQrWSRH~~~W~P~~D~l~T~l~~v~~~L~ 120 (122)
T PF14462_consen 88 GRTWQRWSRHNNPWRPGVDDLWTHLARVEHALA 120 (122)
T ss_pred CeeeeeecCCCCCCCCCCCcHHHHHHHHHHHHh
Confidence 32 35688999999899999999987764
No 32
>PF05773 RWD: RWD domain; InterPro: IPR006575 The RWD eukaryotic domain is found in RING finger (IPR001841 from INTERPRO) and WD repeat (IPR001680 from INTERPRO) containing proteins and DEXDc-like helicase (IPR001410 from INTERPRO) subfamily related to the ubiquitin-conjugating enzymes domain (IPR000608 from INTERPRO). ; GO: 0005515 protein binding; PDB: 2EBM_A 2EBK_A 2DAX_A 2DAW_A 2DAY_A 2DMF_A 1UKX_A 2YZ0_A.
Probab=95.13 E-value=0.041 Score=44.81 Aligned_cols=69 Identities=14% Similarity=0.249 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHhcCCCCeEEEeecCCcceEEEEEe--cCCCCCcCCCeEEEEEeCCCCCCCCCCeeeecccc
Q 018254 56 KKIMQEWKILEKHLPESIFVRVYENRIDLLRAVIV--GTAGTPYHDGLFFFDLAFPADYPNHPPMVHYRSFG 125 (359)
Q Consensus 56 kRL~kEl~~L~k~~p~gI~v~~~e~~l~~w~~~I~--GP~gTPYegG~F~f~I~fP~dYP~~PP~V~f~T~i 125 (359)
.+...|+..|+.--++.+ +.....+...+.+.+. ....+.-....+.+.|.||++||..||.|...+..
T Consensus 4 e~~~~EieaL~sIy~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~p~~YP~~~P~i~l~~~~ 74 (113)
T PF05773_consen 4 EQQEEEIEALQSIYPDDF-IEIESKSPPSLEVKLDESSSSFESSSFPSVTLHFTLPPGYPESPPKISLESPK 74 (113)
T ss_dssp HHHHHHHHHHHHHSSSSE-SSSTSSSSEEEEEEE--CEECCTTTTSEEEEEEEEE-SSTTSS--EEEEEEES
T ss_pred HHHHHHHHHHHHHcCCCc-cccccCCCCceeeeecccccccccccceeEEEEEeCCCcCCCcCCEEEEEcCC
Confidence 456788888887655544 2222333445556662 23344444568999999999999999999887763
No 33
>smart00591 RWD domain in RING finger and WD repeat containing proteins and DEXDc-like helicases subfamily related to the UBCc domain.
Probab=94.01 E-value=0.25 Score=39.85 Aligned_cols=27 Identities=15% Similarity=0.386 Sum_probs=22.7
Q ss_pred CCCeEEEEEeCCCCCCCCCCeeeeccc
Q 018254 98 HDGLFFFDLAFPADYPNHPPMVHYRSF 124 (359)
Q Consensus 98 egG~F~f~I~fP~dYP~~PP~V~f~T~ 124 (359)
..-.+.+.|.||++||..+|.|.+.+.
T Consensus 39 ~~~~~~l~~~~p~~YP~~~P~i~~~~~ 65 (107)
T smart00591 39 QYVSLTLQVKLPENYPDEAPPISLLNS 65 (107)
T ss_pred cceEEEEEEECCCCCCCCCCCeEEECC
Confidence 345688999999999999999987764
No 34
>PF14457 Prok-E2_A: Prokaryotic E2 family A
Probab=89.08 E-value=0.57 Score=42.39 Aligned_cols=64 Identities=22% Similarity=0.341 Sum_probs=49.8
Q ss_pred EEEeCCCCCCCCCCeeeecccccccC-CCcCCC-----CceeeccccccCCCCCCCcccCcccHHHHHHHHHHHhcc
Q 018254 104 FDLAFPADYPNHPPMVHYRSFGLRLN-PNLYAN-----GRVCLSLLNTWTGKKSEKWNPDESTVLQVLVSIQALVLN 174 (359)
Q Consensus 104 f~I~fP~dYP~~PP~V~f~T~i~rfH-PNVy~~-----GkVCLslL~tw~G~~~e~WsP~~stI~qVL~sIq~Ll~~ 174 (359)
+.|.|+.+||..+|.|.+.-..|.-+ |+++.. ..+||..-. | ..|.+.. ++..+|..|..-|..
T Consensus 57 ~~i~~~~~~~~~~P~v~~lR~dFP~~lpH~~~~~~~~p~~lCl~~~~-~-----~e~~~~~-g~~~~l~rl~~Wl~~ 126 (162)
T PF14457_consen 57 VAIVFPPDSPLSAPEVPALRKDFPGNLPHQNPGPEGEPVSLCLYEGP-W-----SEWRPSW-GPEGFLDRLFDWLRD 126 (162)
T ss_pred EEEEecCCCCCCCccchhhHhhCCCCCCccCCCCCCCCccceEecCC-H-----HHhhhcc-CHHHHHHHHHHHHHH
Confidence 56899999999999888887766664 888866 678996554 3 6788887 888888888776653
No 35
>PF09765 WD-3: WD-repeat region; InterPro: IPR019162 This entry represents a region of approximately 100 residues containing three WD repeats and six cysteine residues- possibly as three cysteine-bridges associated with FancL. FancL is the ubiquitin ligase protein that mediates ubiquitination of FancD2, a key step in the DNA damage pathway [, ]. FancL belongs to the multisubunit Fanconi anemia (FA) complex, which is composed of subunits: FancA, FancB, FancC, FancE, FancF, FancG, FancL/PHF9 and FancM. The WD repeats are required for interaction of FancL with other subunits of the FA complex []. In humans defects in FancL are a cause of Fanconi anemia (FA) [MIM:227650], and the FA complex is not found in FA patients. FA is a genetically heterogeneous, autosomal recessive disorder characterised by progressive pancytopenia, a diverse assortment of congenital malformations, and a predisposition to the development of malignancies. At the cellular level it is associated with hypersensitivity to DNA-damaging agents, chromosomal instability (increased chromosome breakage), and defective DNA repair.; PDB: 3ZQS_B 3K1L_A.
Probab=71.88 E-value=7.7 Score=38.28 Aligned_cols=91 Identities=15% Similarity=0.375 Sum_probs=58.3
Q ss_pred hhHHHHHHHHHHHHHhcCCCCeEEEeecCCcceEEEEEecCCCCCcCCCeEEEEEeCCCCCCCCCCeeeecccccccCCC
Q 018254 52 AGSHKKIMQEWKILEKHLPESIFVRVYENRIDLLRAVIVGTAGTPYHDGLFFFDLAFPADYPNHPPMVHYRSFGLRLNPN 131 (359)
Q Consensus 52 s~a~kRL~kEl~~L~k~~p~gI~v~~~e~~l~~w~~~I~GP~gTPYegG~F~f~I~fP~dYP~~PP~V~f~T~i~rfHPN 131 (359)
+...++|.+|+..|..+.. +++. .++++...+..+..- .-...+.|.+|.+||..||.+...-++
T Consensus 98 ~~~ys~ll~EIe~IGW~kl--~~i~-~d~~ls~i~l~~~D~------~R~H~l~l~l~~~yp~~~p~~~~~~P~------ 162 (291)
T PF09765_consen 98 PQYYSNLLKEIEAIGWDKL--VQIQ-FDDDLSTIKLKIFDS------SRQHYLELKLPSNYPFEPPSCSLDLPI------ 162 (291)
T ss_dssp -GGC-CHHHHHHHHHCGCC--EEEE-E-CCCSEEEEEEETT------CEEEEEEEETTTTTTTSEEEECS-TTS------
T ss_pred cHHHHHHHHHHHHhccccc--eEEe-cCCCccEEEEEEEcC------CceEEEEEEECCCCCCCCceeeCCCCc------
Confidence 4567788888888765432 2221 245677777777621 245678899999999999986544332
Q ss_pred cCCCCceeeccccccCCCCCCCcccCcccHHHHHHHHHHHhcc
Q 018254 132 LYANGRVCLSLLNTWTGKKSEKWNPDESTVLQVLVSIQALVLN 174 (359)
Q Consensus 132 Vy~~GkVCLslL~tw~G~~~e~WsP~~stI~qVL~sIq~Ll~~ 174 (359)
.+ ...|.+..|++..|+...+..+..
T Consensus 163 ---------~~--------~~~w~~~~ssL~~v~~qF~~~le~ 188 (291)
T PF09765_consen 163 ---------PF--------SLSWSPSQSSLKDVVQQFQEALES 188 (291)
T ss_dssp ----------H--------HHHHHCHT-SHHHHHHHHHHHHHH
T ss_pred ---------ch--------hhhhcccccCHHHHHHHHHHHHHH
Confidence 11 147888666899888888877753
No 36
>KOG4018 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=51.18 E-value=46 Score=31.62 Aligned_cols=22 Identities=18% Similarity=0.594 Sum_probs=19.4
Q ss_pred eEEEEEeCCCCCCCCCCeeeec
Q 018254 101 LFFFDLAFPADYPNHPPMVHYR 122 (359)
Q Consensus 101 ~F~f~I~fP~dYP~~PP~V~f~ 122 (359)
.|.+.+.++.+||..||.+.+.
T Consensus 50 ~~~l~~s~tEnYPDe~Pli~~~ 71 (215)
T KOG4018|consen 50 SFILVFSLTENYPDEAPLIEAF 71 (215)
T ss_pred cEEEEEEccCCCCCCCcceecc
Confidence 7889999999999999999443
No 37
>PF06113 BRE: Brain and reproductive organ-expressed protein (BRE); InterPro: IPR010358 This family consists of several eukaryotic brain and reproductive organ-expressed (BRE) proteins. BRE is a putative stress-modulating gene, found able to down-regulate TNF-alpha-induced-NF-kappaB activation upon over expression. A total of six isoforms are produced by alternative splicing predominantly at either end of the gene. Compared to normal cells, immortalised human cell lines uniformly express higher levels of BRE. Peripheral blood monocytes respond to LPS by down-regulating the expression of all the BRE isoforms. It is thought that the function of BRE and its isoforms is to regulate peroxisomal activities [].
Probab=48.74 E-value=37 Score=34.29 Aligned_cols=44 Identities=27% Similarity=0.566 Sum_probs=35.0
Q ss_pred cceEEEEEecCCCCCcCCCeEEEEEeCCCCCCCCCCeeeecccccccCCCc
Q 018254 82 IDLLRAVIVGTAGTPYHDGLFFFDLAFPADYPNHPPMVHYRSFGLRLNPNL 132 (359)
Q Consensus 82 l~~w~~~I~GP~gTPYegG~F~f~I~fP~dYP~~PP~V~f~T~i~rfHPNV 132 (359)
.|.++..| ||.|-...-+|.|...||..||.+.|..-. -|+|..
T Consensus 53 ~DRF~l~I------Py~~~~l~W~viFd~~~p~~pPDfiF~eD~-~F~pd~ 96 (333)
T PF06113_consen 53 CDRFKLLI------PYCGEYLKWDVIFDAQYPEFPPDFIFGEDD-NFLPDP 96 (333)
T ss_pred cceEEEEe------eccCCEEEEEEEEcCCCCCCCCCEEeCCCc-CcCCCh
Confidence 45556555 699999999999999999999999997432 358853
No 38
>cd00421 intradiol_dioxygenase Intradiol dioxygenases catalyze the critical ring-cleavage step in the conversion of catecholate derivatives to citric acid cycle intermediates. This family contains catechol 1,2-dioxygenases and protocatechuate 3,4-dioxygenases which are mononuclear non-heme iron enzymes that catalyze the oxygenation of catecholates to aliphatic acids via the cleavage of aromatic rings. The members are intradiol-cleaving enzymes which break the catechol C1-C2 bond and utilize Fe3+, as opposed to the extradiol-cleaving enzymes which break the C2-C3 or C1-C6 bond and utilize Fe2+ and Mn+. Catechol 1,2-dioxygenases are mostly homodimers with one catalytic ferric ion per monomer. Protocatechuate 3,4-dioxygenases form more diverse oligomers.
Probab=42.10 E-value=29 Score=30.48 Aligned_cols=27 Identities=37% Similarity=0.889 Sum_probs=24.0
Q ss_pred CCCeEEEEEeCCCCCC-CCCCeeeeccc
Q 018254 98 HDGLFFFDLAFPADYP-NHPPMVHYRSF 124 (359)
Q Consensus 98 egG~F~f~I~fP~dYP-~~PP~V~f~T~ 124 (359)
+.|.|.|.-.+|-.|| ..||.|+|.-.
T Consensus 64 ~~G~y~f~ti~Pg~Y~~~R~~HiH~~V~ 91 (146)
T cd00421 64 ADGRYRFRTIKPGPYPIGRPPHIHFKVF 91 (146)
T ss_pred CCcCEEEEEEcCCCCCCCCCCEEEEEEE
Confidence 3599999999999999 99999998864
No 39
>cd03457 intradiol_dioxygenase_like Intradiol dioxygenase supgroup. Intradiol dioxygenases catalyze the critical ring-cleavage step in the conversion of catecholate derivatives to citric acid cycle intermediates. They break the catechol C1-C2 bond and utilize Fe3+, as opposed to the extradiol-cleaving enzymes which break the C2-C3 or C1-C6 bond and utilize Fe2+ and Mn+. The family contains catechol 1,2-dioxygenases and protocatechuate 3,4-dioxygenases. The specific function of this subgroup is unknown.
Probab=39.03 E-value=33 Score=31.73 Aligned_cols=27 Identities=30% Similarity=0.695 Sum_probs=24.2
Q ss_pred CCCeEEEEEeCCCCCCCCCCeeeeccc
Q 018254 98 HDGLFFFDLAFPADYPNHPPMVHYRSF 124 (359)
Q Consensus 98 egG~F~f~I~fP~dYP~~PP~V~f~T~ 124 (359)
+.|.|.|.=.+|--||.+||.|||.-.
T Consensus 85 ~~G~~~F~TI~PG~Y~gR~~HIH~~V~ 111 (188)
T cd03457 85 ADGVVTFTTIFPGWYPGRATHIHFKVH 111 (188)
T ss_pred CCccEEEEEECCCCCCCCCceEEEEEE
Confidence 469999999999999999999999864
No 40
>KOG1047 consensus Bifunctional leukotriene A4 hydrolase/aminopeptidase LTA4H [Lipid transport and metabolism; Posttranslational modification, protein turnover, chaperones; Defense mechanisms; Amino acid transport and metabolism]
Probab=37.50 E-value=23 Score=38.11 Aligned_cols=59 Identities=20% Similarity=0.483 Sum_probs=40.2
Q ss_pred CCcCCCeEEEEEeCCCCCCC---CCCeeeecccccccCCCcCCCCceeeccccccCCC--CCCCcc
Q 018254 95 TPYHDGLFFFDLAFPADYPN---HPPMVHYRSFGLRLNPNLYANGRVCLSLLNTWTGK--KSEKWN 155 (359)
Q Consensus 95 TPYegG~F~f~I~fP~dYP~---~PP~V~f~T~i~rfHPNVy~~GkVCLslL~tw~G~--~~e~Ws 155 (359)
+||.=|.|.+ +.+|++||+ +-|-+.|.|+.+.-+-+- ---.||..|-..|.|. .+.+|.
T Consensus 248 GpY~WgryDl-lvlPpSFP~gGMENPcltF~TpTllaGDrs-l~~vIaHEIAHSWtGNlVTN~sWe 311 (613)
T KOG1047|consen 248 GPYVWGRYDL-LVLPPSFPFGGMENPCLTFVTPTLLAGDRS-LVDVIAHEIAHSWTGNLVTNASWE 311 (613)
T ss_pred CCcccccceE-EEecCCCCcccccCcceeeecchhhcCCcc-hhhHHHHHhhhhhcccccccCccc
Confidence 4677788876 557999998 669999999853111111 1235899999999886 344454
No 41
>cd03459 3,4-PCD Protocatechuate 3,4-dioxygenase (3,4-PCD) catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate. 3,4-PCDs are large aggregates of 12 protomers, each composed of an alpha- and beta-subunit and an Fe3+ ion bound in the beta-subunit at the alpha-beta-subunit interface. 3,4-PCD is a member of the aromatic dioxygenases which are non-heme iron intradiol-cleaving enzymes that break the C1-C2 bond and utilize Fe3+.
Probab=29.37 E-value=60 Score=29.14 Aligned_cols=26 Identities=35% Similarity=0.678 Sum_probs=23.4
Q ss_pred CCeEEEEEeCCCCCC-----CCCCeeeeccc
Q 018254 99 DGLFFFDLAFPADYP-----NHPPMVHYRSF 124 (359)
Q Consensus 99 gG~F~f~I~fP~dYP-----~~PP~V~f~T~ 124 (359)
.|.|.|.-.+|--|| ..||.|+|.-.
T Consensus 72 ~G~~~f~Ti~Pg~Y~~p~~~~R~~HIH~~V~ 102 (158)
T cd03459 72 DGRYRFRTIKPGAYPWRNGAWRAPHIHVSVF 102 (158)
T ss_pred CCcEEEEEECCCCcCCCCCCCcCCEEEEEEE
Confidence 588999999999999 89999998864
No 42
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=27.41 E-value=2e+02 Score=32.59 Aligned_cols=22 Identities=32% Similarity=0.664 Sum_probs=18.4
Q ss_pred EEEEeCCCCCCC-CCCeeeeccc
Q 018254 103 FFDLAFPADYPN-HPPMVHYRSF 124 (359)
Q Consensus 103 ~f~I~fP~dYP~-~PP~V~f~T~ 124 (359)
++.|.||.+||. .||.+.|..+
T Consensus 469 rm~V~FP~nYPn~a~P~Fq~e~~ 491 (1081)
T KOG0309|consen 469 RMLVKFPANYPNNAAPSFQFENP 491 (1081)
T ss_pred EEEEeccccCCCCCCCceEEecC
Confidence 678899999999 5688888754
No 43
>PF09606 Med15: ARC105 or Med15 subunit of Mediator complex non-fungal; InterPro: IPR019087 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. The proteins in this entry represent subunit Med15 of the Mediator complex. They contain a single copy of the approximately 70 residue ARC105 domain. The ARC105 domain of the ARC-Mediator co-activator is a three-helix bundle with marked similarity to the KIX domain. The sterol regulatory element binding protein (SREBP) family of transcription activators use the ARC105 subunit to activate target genes in the regulation of cholesterol and fatty acid homeostasis. In addition, ARC105 is a critical transducer of gene activation signals that control early metazoan development []. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex; PDB: 2GUT_A.
Probab=24.66 E-value=25 Score=39.50 Aligned_cols=25 Identities=28% Similarity=0.405 Sum_probs=0.0
Q ss_pred EEEEEeCCCCCCCCCCeeeeccccc
Q 018254 102 FFFDLAFPADYPNHPPMVHYRSFGL 126 (359)
Q Consensus 102 F~f~I~fP~dYP~~PP~V~f~T~i~ 126 (359)
=-+.|.+|.|||..+|.+.+.+.-|
T Consensus 716 PPl~l~vP~~YP~~sp~~~~~~~~y 740 (799)
T PF09606_consen 716 PPLRLTVPADYPRQSPQCSVDRDEY 740 (799)
T ss_dssp -------------------------
T ss_pred CCeeEeCCCCCCccCCcCcccHHHh
Confidence 3467889999999999987766543
No 44
>COG0384 Predicted epimerase, PhzC/PhzF homolog [General function prediction only]
Probab=22.00 E-value=1.7e+02 Score=29.03 Aligned_cols=64 Identities=16% Similarity=0.144 Sum_probs=46.6
Q ss_pred ceeeCCCCCCccccccccCCCCCCCCChhHHHHHHHHHHHHHhcCCCCeEEEeecCCcceEEEEEecCCC
Q 018254 25 FDVVSDVSDHHYITSSFTKKNGRDHFPAGSHKKIMQEWKILEKHLPESIFVRVYENRIDLLRAVIVGTAG 94 (359)
Q Consensus 25 f~~v~~~~dh~y~~~~~~~~~~~~~~ss~a~kRL~kEl~~L~k~~p~gI~v~~~e~~l~~w~~~I~GP~g 94 (359)
|.+|..+.+-.|..+.+.-.......+...+.+|.+|+ ++++..++.+..+. ..|++-|+-|..
T Consensus 6 ~~~vDvFt~~~~~GNp~aVv~~a~~Lsd~~MQ~IA~e~-----n~SET~Fv~~~~~~-~~~rlR~FTP~~ 69 (291)
T COG0384 6 VYQVDVFTSKPFGGNPLAVVLDADGLSDEQMQAIAREF-----NLSETAFVLPPDDP-ADARLRIFTPTT 69 (291)
T ss_pred eEEEEEecCCCCCCCceEEEeCCCCCCHHHHHHHHHHh-----CCceeEEEcCCCCc-CceEEEEeCCCc
Confidence 44445556666666655555556667788899999988 67888998888777 888888887763
No 45
>TIGR02423 protocat_alph protocatechuate 3,4-dioxygenase, alpha subunit. This model represents the alpha chain of protocatechuate 3,4-dioxygenase. The most closely related family outside this family is that of the beta chain (TIGR02422), typically encoded in an adjacent locus. This enzyme acts in the degradation of aromatic compounds by way of p-hydroxybenzoate to succinate and acetyl-CoA.
Probab=21.49 E-value=97 Score=28.81 Aligned_cols=26 Identities=23% Similarity=0.526 Sum_probs=22.3
Q ss_pred CCCeEEEEEeCCCCCCC-----CCCeeeecc
Q 018254 98 HDGLFFFDLAFPADYPN-----HPPMVHYRS 123 (359)
Q Consensus 98 egG~F~f~I~fP~dYP~-----~PP~V~f~T 123 (359)
+.|.|.|.-.+|--||. .||.|+|.-
T Consensus 95 ~~G~y~f~TI~Pg~Yp~~~g~~R~~HiH~~V 125 (193)
T TIGR02423 95 ESGEFTFETVKPGAVPDRDGVLQAPHINVSV 125 (193)
T ss_pred CCCCEEEEEEcCCCcCCCCCCCcCCeEEEEE
Confidence 35889999999999998 899888774
No 46
>PRK10281 hypothetical protein; Provisional
Probab=20.57 E-value=2.1e+02 Score=28.06 Aligned_cols=71 Identities=14% Similarity=0.103 Sum_probs=50.0
Q ss_pred CceeeCCCCCCccccccccCCCCCCCCChhHHHHHHHHHHHHHhcCCCCeEEEeecCCcceEEEEEecCCC-CCcCC
Q 018254 24 QFDVVSDVSDHHYITSSFTKKNGRDHFPAGSHKKIMQEWKILEKHLPESIFVRVYENRIDLLRAVIVGTAG-TPYHD 99 (359)
Q Consensus 24 ~f~~v~~~~dh~y~~~~~~~~~~~~~~ss~a~kRL~kEl~~L~k~~p~gI~v~~~e~~l~~w~~~I~GP~g-TPYeg 99 (359)
+|.+|..+.+-.|..+.+.-......++...+.+|.+|+ +.++..+|.+.++.-..|++-|+-|.+ -|+.|
T Consensus 4 ~~~~vDaFt~~~f~GNpaaVv~~a~~L~~~~Mq~IAre~-----n~SETaFv~~~~~~~~~~~lR~FTP~~Ev~fcG 75 (299)
T PRK10281 4 QIYHVDAFTSQPFRGNSAGVVLNADGLSEAQMQLIAREL-----NHSETAFLLSSDDSSYDVRVRYFTPTVEVPICG 75 (299)
T ss_pred eEEEEEeccCCCCCCCceEEEcCCCCCCHHHHHHHHHHh-----CCceEEEEccCCCCCCceEEEEECCCcccccCC
Confidence 577777888888887765554455567788889999888 578888888665433457888887664 34554
No 47
>PF06113 BRE: Brain and reproductive organ-expressed protein (BRE); InterPro: IPR010358 This family consists of several eukaryotic brain and reproductive organ-expressed (BRE) proteins. BRE is a putative stress-modulating gene, found able to down-regulate TNF-alpha-induced-NF-kappaB activation upon over expression. A total of six isoforms are produced by alternative splicing predominantly at either end of the gene. Compared to normal cells, immortalised human cell lines uniformly express higher levels of BRE. Peripheral blood monocytes respond to LPS by down-regulating the expression of all the BRE isoforms. It is thought that the function of BRE and its isoforms is to regulate peroxisomal activities [].
Probab=20.14 E-value=96 Score=31.40 Aligned_cols=25 Identities=20% Similarity=0.558 Sum_probs=21.6
Q ss_pred CeEEEEEeCCCCCCCCCCeeeeccc
Q 018254 100 GLFFFDLAFPADYPNHPPMVHYRSF 124 (359)
Q Consensus 100 G~F~f~I~fP~dYP~~PP~V~f~T~ 124 (359)
-.|.+.|.+|..||...|.++|.+-
T Consensus 306 F~flvHi~Lp~~FP~~qP~ltlqS~ 330 (333)
T PF06113_consen 306 FTFLVHISLPIQFPKDQPSLTLQSV 330 (333)
T ss_pred eEEEEEEeccCCCCCcCCeEEEEee
Confidence 3477788899999999999999884
Done!