Query 018255
Match_columns 359
No_of_seqs 237 out of 726
Neff 3.9
Searched_HMMs 29240
Date Mon Mar 25 12:22:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018255.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018255hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ayd_A WRKY transcription fact 100.0 1.8E-32 6.3E-37 217.5 5.7 65 285-350 10-74 (76)
2 1wj2_A Probable WRKY transcrip 100.0 5.3E-32 1.8E-36 215.8 5.0 66 284-350 12-77 (78)
3 2rpr_A Flywch-type zinc finger 58.4 4.8 0.00016 31.1 2.1 49 289-350 24-74 (87)
4 1xiw_B T-cell surface glycopro 25.6 25 0.00085 27.1 1.3 50 290-348 17-76 (79)
5 2vsd_A CHIR AB1; immune system 17.9 22 0.00076 27.0 -0.4 36 310-348 68-103 (105)
6 1xwj_B Talin, metavinculin; ce 16.8 1.5E+02 0.0052 18.4 3.4 21 3-23 5-25 (26)
7 2v9t_A Roundabout homolog 1; s 16.0 47 0.0016 24.7 1.0 34 308-347 82-115 (117)
8 1xiw_A T-cell surface glycopro 15.9 25 0.00084 29.2 -0.7 28 289-316 32-78 (105)
9 1cz6_A Protein (androctonin); 12.8 51 0.0017 20.9 0.3 7 311-317 16-22 (26)
10 2aw2_A B and T lymphocyte atte 6.5 1.9E+02 0.0064 24.6 1.5 46 294-347 63-116 (120)
No 1
>2ayd_A WRKY transcription factor 1; beta strands, zinc finger; 1.60A {Arabidopsis thaliana}
Probab=99.97 E-value=1.8e-32 Score=217.53 Aligned_cols=65 Identities=58% Similarity=1.139 Sum_probs=62.3
Q ss_pred ccCCCCCCccccccCCCCCCCCCCCCccccccCCCCCCcccceeecCCCCceEEEEEeccCCCCCC
Q 018255 285 VADIPPDEYTWRKYGQKPIKGSPHPRGYYKCSSVRGCPARKHVERCPEEPSMLIVTYEGEHNHSRI 350 (359)
Q Consensus 285 ~~dip~Dgy~WRKYGQK~Ikgs~~PRsYYRCs~~~gC~ArK~Vqr~~dDp~~~~VtY~GeH~h~~~ 350 (359)
..++++|||.|||||||.|||++|||+||||++ .||+|+|+|||+++|+.+++|||+|+|||+.|
T Consensus 10 ~~~~~~DGy~WRKYGQK~ikgs~~PRsYYrCt~-~gC~a~K~Ver~~~d~~~~~~tY~G~H~H~~p 74 (76)
T 2ayd_A 10 LFDIVNDGYRWRKYGQKSVKGSPYPRSYYRCSS-PGCPVKKHVERSSHDTKLLITTYEGKHDHDMP 74 (76)
T ss_dssp SSSCCCCSSCEEEEEEECCTTCSSCEEEEEECS-TTCCCEEEEEECSSSTTEEEEEEESCCSSCCC
T ss_pred CCCcCCCCchhhhCcccccCCCCCceeEeEcCC-CCCCceeeEEEECCCCCEEEEEEccCcCCCCC
Confidence 468899999999999999999999999999995 79999999999999999999999999999987
No 2
>1wj2_A Probable WRKY transcription factor 4; DNA-binding domain, zinc-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.79.1.1 PDB: 2lex_A*
Probab=99.97 E-value=5.3e-32 Score=215.81 Aligned_cols=66 Identities=53% Similarity=1.059 Sum_probs=62.6
Q ss_pred CccCCCCCCccccccCCCCCCCCCCCCccccccCCCCCCcccceeecCCCCceEEEEEeccCCCCCC
Q 018255 284 KVADIPPDEYTWRKYGQKPIKGSPHPRGYYKCSSVRGCPARKHVERCPEEPSMLIVTYEGEHNHSRI 350 (359)
Q Consensus 284 ~~~dip~Dgy~WRKYGQK~Ikgs~~PRsYYRCs~~~gC~ArK~Vqr~~dDp~~~~VtY~GeH~h~~~ 350 (359)
...++++|||.|||||||.|||++|||+||||++ .||+|+|+|||+.+|+.+++|||+|+|||+.|
T Consensus 12 s~~~~~dDGy~WRKYGQK~ikgs~~PRsYYrCt~-~gC~a~K~Ver~~~d~~~~~~tY~G~H~H~~p 77 (78)
T 1wj2_A 12 SEVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTT-PGCGVRKHVERAATDPKAVVTTYEGKHNHDLP 77 (78)
T ss_dssp CCCCCCCSSSCBCCCEEECCTTCSSCEEEEEEEC-SSCEEEEEEEEETTTTSEEEEEEESCCSSCCC
T ss_pred CCCCcCCCCchhhhCcccccCCCcCeeEEeecCc-CCCCcEeeEEEEcCCCCEEEEEEeeEcCCCCC
Confidence 3458899999999999999999999999999996 89999999999999999999999999999987
No 3
>2rpr_A Flywch-type zinc finger-containing protein 1; flywch domain, alternative splicing, DNA-binding, metal- binding, nucleus, metal binding protein; NMR {Homo sapiens}
Probab=58.45 E-value=4.8 Score=31.12 Aligned_cols=49 Identities=18% Similarity=0.371 Sum_probs=30.4
Q ss_pred CCCCccccccCCCCCCCCCCCCccccccCC--CCCCcccceeecCCCCceEEEEEeccCCCCCC
Q 018255 289 PPDEYTWRKYGQKPIKGSPHPRGYYKCSSV--RGCPARKHVERCPEEPSMLIVTYEGEHNHSRI 350 (359)
Q Consensus 289 p~Dgy~WRKYGQK~Ikgs~~PRsYYRCs~~--~gC~ArK~Vqr~~dDp~~~~VtY~GeH~h~~~ 350 (359)
.-|||...+--+ ...+.|.+|+.. .+|.|+=.... ++ +...+.|||+..
T Consensus 24 v~~Gy~Y~~~~~------~~~~~yWrC~~~~~~kCrARi~T~~--~~-----~~~~~~HnH~p~ 74 (87)
T 2rpr_A 24 VHESFLYRKEKA------AGEKVYWMCRDQARLGCRSRAITQG--HR-----IMVMRSHCHQPD 74 (87)
T ss_dssp EETTEEEEEEEE------CSSCEEEEEGGGTTSCCCCEEEEET--TE-----EEECSCCSSCCC
T ss_pred EECCEEEEeeec------CCCcEEEEecCCCCCCCCEEEEEcC--CC-----EECCCCcCCCCc
Confidence 358887664321 123689999962 48999754432 22 235789999754
No 4
>1xiw_B T-cell surface glycoprotein CD3 delta chain; CD3-epsilon, CD3-delta, UCHT1-SCFV, immunoglobulin fold, antibody-antigen complex; 1.90A {Homo sapiens} SCOP: b.1.1.4
Probab=25.59 E-value=25 Score=27.08 Aligned_cols=50 Identities=20% Similarity=0.306 Sum_probs=27.1
Q ss_pred CCCccccccCCCC--------CC--CCCCCCccccccCCCCCCcccceeecCCCCceEEEEEeccCCCC
Q 018255 290 PDEYTWRKYGQKP--------IK--GSPHPRGYYKCSSVRGCPARKHVERCPEEPSMLIVTYEGEHNHS 348 (359)
Q Consensus 290 ~Dgy~WRKYGQK~--------Ik--gs~~PRsYYRCs~~~gC~ArK~Vqr~~dDp~~~~VtY~GeH~h~ 348 (359)
.+++.|-|-|... +. ...-|||||.|... +.+. ...+.|.|.|.=..||-
T Consensus 17 ~~~i~W~k~~~~i~~~~~~tL~L~~~~~d~sG~Y~C~~~------~~~~---~~~s~LqV~yR~C~NCi 76 (79)
T 1xiw_B 17 NTSITWVEGTVGTLLSDITRLDLGKRILDPRGIYRCNGT------DIYK---DKESTVQVHYRMCQSCV 76 (79)
T ss_dssp SSCEEEEEECCCEEEGGGTEEEEEEGGGCCEEEEEEC-----------------CEEEEEEEECSCC--
T ss_pred CCCEEEEECCcccccccCCeEEeccCcCCCCeEEEecCC------CCCC---cccEEEEEEhhhcCCcc
Confidence 4668898877641 22 23449999999521 1111 00125678888777763
No 5
>2vsd_A CHIR AB1; immune system receptor, FC receptor; HET: NAG NDG MAN; 1.82A {Gallus gallus}
Probab=17.94 E-value=22 Score=26.96 Aligned_cols=36 Identities=31% Similarity=0.550 Sum_probs=16.8
Q ss_pred CccccccCCCCCCcccceeecCCCCceEEEEEeccCCCC
Q 018255 310 RGYYKCSSVRGCPARKHVERCPEEPSMLIVTYEGEHNHS 348 (359)
Q Consensus 310 RsYYRCs~~~gC~ArK~Vqr~~dDp~~~~VtY~GeH~h~ 348 (359)
-|-|+|....+-+ .+....-|+..+.|+|.+.|.|.
T Consensus 68 sG~Y~C~~~n~~~---~~~s~~Sdpl~L~V~~~~~~~~~ 103 (105)
T 2vsd_A 68 AGTYQCRYQVSEP---LWTSNQSDPVELVLTIEGRHHHH 103 (105)
T ss_dssp CEEEEEEEEEETT---EEECCCCCCEEECCC--------
T ss_pred CeEEEEEEEcCCC---CcccCCCCCEEEEEEEecccccc
Confidence 3778997421111 12334578989999999999875
No 6
>1xwj_B Talin, metavinculin; cell adhesion/protein binding complex; 2.60A {Gallus gallus} PDB: 1rkc_B
Probab=16.81 E-value=1.5e+02 Score=18.42 Aligned_cols=21 Identities=29% Similarity=0.308 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhc
Q 018255 3 EVEEANKIAVESCYRVLNLLS 23 (359)
Q Consensus 3 eVEEAnraavESc~rvL~LLS 23 (359)
|+-+++|.-.|.+.+||+.|.
T Consensus 5 el~~~~r~v~ekV~~vlaaLq 25 (26)
T 1xwj_B 5 ELIESARKVSEKVSHVLAALQ 25 (26)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHhh
Confidence 678899999999999999885
No 7
>2v9t_A Roundabout homolog 1; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens}
Probab=16.00 E-value=47 Score=24.74 Aligned_cols=34 Identities=26% Similarity=0.426 Sum_probs=14.8
Q ss_pred CCCccccccCCCCCCcccceeecCCCCceEEEEEeccCCC
Q 018255 308 HPRGYYKCSSVRGCPARKHVERCPEEPSMLIVTYEGEHNH 347 (359)
Q Consensus 308 ~PRsYYRCs~~~gC~ArK~Vqr~~dDp~~~~VtY~GeH~h 347 (359)
...|.|.|. |...+-........+.+.|+-+|.|
T Consensus 82 ~D~G~Y~C~------a~N~~G~~~s~~~~l~~~~~~~~~~ 115 (117)
T 2v9t_A 82 PDEGVYVCV------ARNYLGEAVSHDASLEVAAAAHHHH 115 (117)
T ss_dssp SSCEEEEEE------EEETTEEEECCCEEEEEC-------
T ss_pred CcCEEEEEE------EEeCccceEeeeEEEEhhhhhhhhc
Confidence 344667776 3344444444556667766666655
No 8
>1xiw_A T-cell surface glycoprotein CD3 epsilon chain; CD3-epsilon, CD3-delta, UCHT1-SCFV, immunoglobulin fold, antibody-antigen complex; 1.90A {Homo sapiens} SCOP: b.1.1.4
Probab=15.86 E-value=25 Score=29.23 Aligned_cols=28 Identities=25% Similarity=0.521 Sum_probs=18.3
Q ss_pred CCCCccccccCCCC----------------CCCCCC---CCcccccc
Q 018255 289 PPDEYTWRKYGQKP----------------IKGSPH---PRGYYKCS 316 (359)
Q Consensus 289 p~Dgy~WRKYGQK~----------------Ikgs~~---PRsYYRCs 316 (359)
+.+...|-|-|+.. +.++-. |||||.|.
T Consensus 32 ~~~~I~W~k~~~~i~~~~~~~~~~~~~~~L~L~~~~~~d~sG~Y~C~ 78 (105)
T 1xiw_A 32 PGSEILWQHNDKNIGGDEDDKNIGSDEDHLSLKEFSELEQSGYYVCY 78 (105)
T ss_dssp TTSCEEEEETTEEESSSCSCTTEEEETTEEEETTCCHHHHCEEEEEE
T ss_pred CCCceEEEeCCccccccccccccccCCCeEEeccccccCCCceEEEc
Confidence 34557777776542 335533 89999996
No 9
>1cz6_A Protein (androctonin); peptide, beta sheet, toxin; NMR {Androctonus australis} SCOP: j.3.1.3
Probab=12.79 E-value=51 Score=20.89 Aligned_cols=7 Identities=57% Similarity=1.459 Sum_probs=5.8
Q ss_pred ccccccC
Q 018255 311 GYYKCSS 317 (359)
Q Consensus 311 sYYRCs~ 317 (359)
.||+|++
T Consensus 16 cyykctn 22 (26)
T 1cz6_A 16 CYYKCTN 22 (26)
T ss_dssp CEEEECC
T ss_pred eEEEccC
Confidence 5999995
No 10
>2aw2_A B and T lymphocyte attenuator; IGI domain, IGG domain, TNFRSF, protein-protein complex, IMM system; HET: NAG FUL; 2.80A {Homo sapiens} SCOP: b.1.1.1
Probab=6.53 E-value=1.9e+02 Score=24.62 Aligned_cols=46 Identities=24% Similarity=0.515 Sum_probs=26.3
Q ss_pred cccccCC--------CCCCCCCCCCccccccCCCCCCcccceeecCCCCceEEEEEeccCCC
Q 018255 294 TWRKYGQ--------KPIKGSPHPRGYYKCSSVRGCPARKHVERCPEEPSMLIVTYEGEHNH 347 (359)
Q Consensus 294 ~WRKYGQ--------K~Ikgs~~PRsYYRCs~~~gC~ArK~Vqr~~dDp~~~~VtY~GeH~h 347 (359)
+|..||+ .+|.-+ .-|-|||+.. ....+. ..+..+++||=...|.|
T Consensus 63 ~w~E~~N~s~fvLhf~~V~~s--DsGsYRCsAn----~~sg~i--eSHsvtI~Vt~~~~~~~ 116 (120)
T 2aw2_A 63 SWKEEKNISFFILHFEPVLPN--DNGSYRCSAN----FQSNLI--ESHSTTLYVTDVKHHHH 116 (120)
T ss_dssp EEEECSSCEEEEEEESSCCGG--GCEEEEEEEE----ETTEEE--ECCCEEEEEECGGGCCC
T ss_pred cceecCCeeEEEEEEeeeeEc--CCcceEEEee----CCCCcE--EeeEEEEEEEecccccc
Confidence 6888888 445444 3588999942 112222 34556666665554444
Done!