Query 018256
Match_columns 359
No_of_seqs 135 out of 1632
Neff 9.1
Searched_HMMs 29240
Date Mon Mar 25 12:23:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018256.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018256hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2i68_A Protein EMRE; transmemb 99.2 3.3E-11 1.1E-15 96.3 5.9 72 248-319 35-107 (137)
2 3b5d_A Multidrug transporter E 98.7 5E-08 1.7E-12 75.1 7.3 70 248-317 35-105 (110)
3 2i68_A Protein EMRE; transmemb 98.4 8.3E-07 2.8E-11 70.7 8.0 69 74-148 34-104 (137)
4 3b5d_A Multidrug transporter E 98.3 5.7E-06 2E-10 63.4 10.9 68 74-147 34-103 (110)
5 3l1l_A Arginine/agmatine antip 69.6 69 0.0023 29.4 14.5 45 278-322 389-433 (445)
6 3b9w_A Ammonium transporter fa 50.8 1.5E+02 0.0053 27.3 16.7 21 70-90 177-198 (407)
7 2xq2_A Sodium/glucose cotransp 49.7 1.9E+02 0.0065 28.0 14.9 30 282-311 533-562 (593)
8 4aps_A DI-OR tripeptide H+ sym 39.7 1.8E+02 0.0061 26.6 10.4 165 172-336 320-491 (491)
9 2jp3_A FXYD domain-containing 32.7 22 0.00075 23.6 1.8 20 300-319 23-42 (67)
10 3rko_J NADH-quinone oxidoreduc 30.9 2.1E+02 0.0073 23.1 14.4 34 283-316 126-161 (184)
11 2jo1_A Phospholemman; FXYD1, N 30.6 31 0.001 23.2 2.2 18 300-317 22-39 (72)
12 1pw4_A Glycerol-3-phosphate tr 29.4 3E+02 0.01 24.5 22.7 35 9-45 95-131 (451)
13 2zxe_G FXYD10, phospholemman-l 28.9 38 0.0013 22.9 2.5 20 300-319 25-44 (74)
14 2knc_B Integrin beta-3; transm 28.6 33 0.0011 23.8 2.3 16 341-357 62-77 (79)
15 2knc_A Integrin alpha-IIB; tra 23.5 90 0.0031 19.8 3.4 14 301-314 20-33 (54)
16 1w8x_P Protein P16, protein S, 22.6 1.7E+02 0.0059 20.2 5.0 25 295-319 4-28 (117)
No 1
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=99.16 E-value=3.3e-11 Score=96.29 Aligned_cols=72 Identities=15% Similarity=0.180 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHHHHHHHhcCCcceeeec-cchhhHHHHHHHHHHhcCccchhhHHHHHHHHHHHHHHHhcCcc
Q 018256 248 SAIFAVSVRSVFHTWALRKKGPVYVSMF-KPLGMVVALVFGIAFLGDTLYLGSFVGAATIALGFYAVIWGQAK 319 (359)
Q Consensus 248 ~g~~~~~~~~~~~~~~l~~~~~~~~s~~-~~l~pi~~~i~~~~~~ge~~~~~~~iG~~lii~gi~l~~~~~~~ 319 (359)
.++++++++|.++.+++++.+++.+..+ ..+.|+++.+++++++||++++.+++|+++|++|+++....+++
T Consensus 35 l~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~~~~~ 107 (137)
T 2i68_A 35 GTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLSRS 107 (137)
T ss_dssp HHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCCCC
Confidence 4566889999999999999999999998 89999999999999999999999999999999999999876543
No 2
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=98.66 E-value=5e-08 Score=75.06 Aligned_cols=70 Identities=16% Similarity=0.188 Sum_probs=64.4
Q ss_pred HHHHHHHHHHHHHHHHHhcCCcceeeec-cchhhHHHHHHHHHHhcCccchhhHHHHHHHHHHHHHHHhcC
Q 018256 248 SAIFAVSVRSVFHTWALRKKGPVYVSMF-KPLGMVVALVFGIAFLGDTLYLGSFVGAATIALGFYAVIWGQ 317 (359)
Q Consensus 248 ~g~~~~~~~~~~~~~~l~~~~~~~~s~~-~~l~pi~~~i~~~~~~ge~~~~~~~iG~~lii~gi~l~~~~~ 317 (359)
.++++.++++.++.+++|+.+.+.+..+ ..+.|+++.+++++++||++++.+++|.++|++|+++....+
T Consensus 35 ~~~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~~ 105 (110)
T 3b5d_A 35 GTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS 105 (110)
T ss_pred HHHHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 4555788999999999999999999888 899999999999999999999999999999999999987653
No 3
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=98.40 E-value=8.3e-07 Score=70.68 Aligned_cols=69 Identities=19% Similarity=0.267 Sum_probs=52.3
Q ss_pred HHHHHH-HHHHHHHHHHhccCCcchhhhh-hccchHHHHHHHHHHhhccccceeccccccchhHHHHHhHHHHHHhh
Q 018256 74 LLGLLS-CCGQMFHYFGIENGSPALASAM-IDLTPGFTFILAIIFRMEKLELRVQSSQAKSFGTVLLIGGALIVTLY 148 (359)
Q Consensus 74 ~~g~~~-~~~~~~~~~al~~~~~~~a~~l-~~~~Pi~~~lls~l~~~E~~~~~~~~~~~~~~g~~l~~~Gv~ll~~~ 148 (359)
+.+++. ++++++++.++++.+++.+..+ .++.|+++.++++++++|++++ .+++|+++.++|++++...
T Consensus 34 ~l~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~------~~~~Gi~LIi~GV~ll~~~ 104 (137)
T 2i68_A 34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDL------PAIIGMMLICAGVLIINLL 104 (137)
T ss_dssp CHHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------------CHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCH------HHHHHHHHHHHHHHHHhcC
Confidence 455555 8999999999999999999998 7999999999999999999995 4999999999999998653
No 4
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=98.32 E-value=5.7e-06 Score=63.42 Aligned_cols=68 Identities=19% Similarity=0.265 Sum_probs=61.1
Q ss_pred HHHHHH-HHHHHHHHHHhccCCcchhhhh-hccchHHHHHHHHHHhhccccceeccccccchhHHHHHhHHHHHHh
Q 018256 74 LLGLLS-CCGQMFHYFGIENGSPALASAM-IDLTPGFTFILAIIFRMEKLELRVQSSQAKSFGTVLLIGGALIVTL 147 (359)
Q Consensus 74 ~~g~~~-~~~~~~~~~al~~~~~~~a~~l-~~~~Pi~~~lls~l~~~E~~~~~~~~~~~~~~g~~l~~~Gv~ll~~ 147 (359)
+.+++. .+++.++..++++.|.+.+..+ ..+.|+++.+++++++||+++++ +++|+.+.+.|++++..
T Consensus 34 ~~~~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~------~~~Gi~lIi~Gv~~l~~ 103 (110)
T 3b5d_A 34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLP------AIIGMMLICAGVLIINL 103 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHH------HHHHHHHHHHHHHHHhc
Confidence 455555 8899999999999999999888 79999999999999999999954 99999999999999843
No 5
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=69.57 E-value=69 Score=29.41 Aligned_cols=45 Identities=9% Similarity=-0.084 Sum_probs=24.6
Q ss_pred hhhHHHHHHHHHHhcCccchhhHHHHHHHHHHHHHHHhcCccccc
Q 018256 278 LGMVVALVFGIAFLGDTLYLGSFVGAATIALGFYAVIWGQAKEEK 322 (359)
Q Consensus 278 l~pi~~~i~~~~~~ge~~~~~~~iG~~lii~gi~l~~~~~~~~~~ 322 (359)
.-++++.+...+..-..-....+.|.++++.|+.++.+.++|+++
T Consensus 389 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~y~~~~~~~~~ 433 (445)
T 3l1l_A 389 AVTTIAFLYCIWAVVGSGAKEVMWSFVTLMVITAMYALNYNRLHK 433 (445)
T ss_dssp HHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHSTTCC
T ss_pred HHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 344444444333322222234566888888888888776555433
No 6
>3b9w_A Ammonium transporter family; membrane protein, ammonia transport, rhesus protein, transpo protein; HET: BOG; 1.30A {Nitrosomonas europaea} PDB: 3bhs_A 3b9y_A* 3b9z_A*
Probab=50.81 E-value=1.5e+02 Score=27.31 Aligned_cols=21 Identities=19% Similarity=-0.042 Sum_probs=14.1
Q ss_pred HHHHHHHHHH-HHHHHHHHHHh
Q 018256 70 CRIFLLGLLS-CCGQMFHYFGI 90 (359)
Q Consensus 70 ~~~~~~g~~~-~~~~~~~~~al 90 (359)
..+..+|.+. -.+.+.++-++
T Consensus 177 ~~~~~lGt~lLW~GWfGFN~Gl 198 (407)
T 3b9w_A 177 DRFSMLGSMVLWLFWPSFATAI 198 (407)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHhhhhhh
Confidence 3445566555 77888888884
No 7
>2xq2_A Sodium/glucose cotransporter; transport protein, inverted repeats, LEUT-fold, galactose; 2.73A {Vibrio parahaemolyticus} PDB: 2xq2_B 2kpe_A
Probab=49.67 E-value=1.9e+02 Score=28.02 Aligned_cols=30 Identities=7% Similarity=-0.099 Sum_probs=20.2
Q ss_pred HHHHHHHHHhcCccchhhHHHHHHHHHHHH
Q 018256 282 VALVFGIAFLGDTLYLGSFVGAATIALGFY 311 (359)
Q Consensus 282 ~~~i~~~~~~ge~~~~~~~iG~~lii~gi~ 311 (359)
...+.-++++.+.......++..++++|++
T Consensus 533 ~~~~~~~~~f~~~~~~~i~l~v~~~~~~~~ 562 (593)
T 2xq2_A 533 IVLAVLYTLFWVNADAEITLIIFGVMAGVI 562 (593)
T ss_dssp HHHHHHHHHHHHCTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence 334444555677777777788888888876
No 8
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=39.67 E-value=1.8e+02 Score=26.65 Aligned_cols=165 Identities=4% Similarity=-0.098 Sum_probs=0.0
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHHHHHhcCCCCcccccCchhHHHHHHHHHH
Q 018256 172 SNWTIGGIFLAAHSVILAIYYIVQAWIVRDYPAELMVTLICSIFVTILSSAVSLVAEKNPNAWRLRPDIELMAIGYSAIF 251 (359)
Q Consensus 172 ~~~~~G~~~~l~a~~~~a~~~vl~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 251 (359)
..........+...+.-.+...+.+|..++................+...........................+..++.
T Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~ 399 (491)
T 4aps_A 320 PVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMFAGLSFLLMAIPGALYGTSGKVSPLWLVGSWALVILG 399 (491)
T ss_dssp CSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHHHHHHHHTTTHHHHHHCCCCTTCCTHHHHHHHHHHHHH
T ss_pred CHHHHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHhcCCcceeeeccc-------hhhHHHHHHHHHHhcCccchhhHHHHHHHHHHHHHHHhcCccccccc
Q 018256 252 AVSVRSVFHTWALRKKGPVYVSMFKP-------LGMVVALVFGIAFLGDTLYLGSFVGAATIALGFYAVIWGQAKEEKMD 324 (359)
Q Consensus 252 ~~~~~~~~~~~~l~~~~~~~~s~~~~-------l~pi~~~i~~~~~~ge~~~~~~~iG~~lii~gi~l~~~~~~~~~~~~ 324 (359)
.....-..+....+..+....+.... +...++..+.-.+.+.......++.+++.+++..+.....++.++..
T Consensus 400 ~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 479 (491)
T 4aps_A 400 EMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNAKSEVAYFSYFGLGSVVLGIVLVFLSKRIQGLM 479 (491)
T ss_dssp HHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGGSSTTHHHHHTHHHHHHHHHHHHHC--------
T ss_pred HHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred ccccccccCCCC
Q 018256 325 EDHTEISGFKPS 336 (359)
Q Consensus 325 ~~~~~~~~~~~~ 336 (359)
+++++.++...+
T Consensus 480 ~~~~~~~~~~~~ 491 (491)
T 4aps_A 480 QGVEGSENLYFQ 491 (491)
T ss_dssp ------------
T ss_pred hcccccccccCC
No 9
>2jp3_A FXYD domain-containing ION transport regulator 4; protein, transcription; NMR {Rattus norvegicus}
Probab=32.66 E-value=22 Score=23.62 Aligned_cols=20 Identities=20% Similarity=0.305 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHhcCcc
Q 018256 300 FVGAATIALGFYAVIWGQAK 319 (359)
Q Consensus 300 ~iG~~lii~gi~l~~~~~~~ 319 (359)
+.++++.++|+++....|-|
T Consensus 23 ifA~vLfi~GI~iilS~kcr 42 (67)
T 2jp3_A 23 IFGGLLCIAGIALALSGKCK 42 (67)
T ss_dssp HHHHHHHHHHHHHHHTTHHH
T ss_pred hhHHHHHHHHHHHHHcCccc
Confidence 45667777888887766533
No 10
>3rko_J NADH-quinone oxidoreductase subunit J; complex I, proton pump, membrane protein, Na ubiquinone, cytoplasmic membrane; HET: LFA CA7; 3.00A {Escherichia coli}
Probab=30.88 E-value=2.1e+02 Score=23.12 Aligned_cols=34 Identities=18% Similarity=0.125 Sum_probs=24.8
Q ss_pred HHHHHHHHhcCccchhhHHHHHHHHH--HHHHHHhc
Q 018256 283 ALVFGIAFLGDTLYLGSFVGAATIAL--GFYAVIWG 316 (359)
Q Consensus 283 ~~i~~~~~~ge~~~~~~~iG~~lii~--gi~l~~~~ 316 (359)
+-.+|..+++|-.-+.+..+.++.++ |.+...++
T Consensus 126 ~~~iG~~Lft~Y~lpFElaSvlLLvAmIGAIvLarr 161 (184)
T 3rko_J 126 AKAVGITLFGPYVLAVELASMLLLAGLVVAFHVGRE 161 (184)
T ss_dssp HHHHHHHHTTTSHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 35688888999988999999887753 54444443
No 11
>2jo1_A Phospholemman; FXYD1, Na,K-ATPase, micelle, hydrolase regulator; NMR {Homo sapiens}
Probab=30.56 E-value=31 Score=23.16 Aligned_cols=18 Identities=17% Similarity=0.307 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHhcC
Q 018256 300 FVGAATIALGFYAVIWGQ 317 (359)
Q Consensus 300 ~iG~~lii~gi~l~~~~~ 317 (359)
+.++++.++|+++....|
T Consensus 22 ifA~vLfi~GI~iilS~K 39 (72)
T 2jo1_A 22 VIAGILFILGILIVLSRR 39 (72)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCc
Confidence 456667777877777654
No 12
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=29.44 E-value=3e+02 Score=24.45 Aligned_cols=35 Identities=9% Similarity=-0.084 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHH
Q 018256 9 MVTLEFLDVGLNTVTKAAM--SRGASHFILVVYSNTLAI 45 (359)
Q Consensus 9 ~l~~~~~~g~~~~~~k~~~--~~~~~p~~~~~~R~~~a~ 45 (359)
++.+.++++....+.-... .+ +...+...|.+.+.
T Consensus 95 l~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~l~G~ 131 (451)
T 1pw4_A 95 LPAGLILAAAVMLFMGFVPWATS--SIAVMFVLLFLCGW 131 (451)
T ss_dssp HHHHHHHHHHHHHHHHHCHHHHS--SSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhccc--cHHHHHHHHHHHHH
Confidence 3344445555544432200 22 44456666766554
No 13
>2zxe_G FXYD10, phospholemman-like protein; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_G*
Probab=28.87 E-value=38 Score=22.92 Aligned_cols=20 Identities=20% Similarity=0.439 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHhcCcc
Q 018256 300 FVGAATIALGFYAVIWGQAK 319 (359)
Q Consensus 300 ~iG~~lii~gi~l~~~~~~~ 319 (359)
+.++++.++|+++...+|=|
T Consensus 25 ifA~vLfi~GI~iilS~kcr 44 (74)
T 2zxe_G 25 IVAAVLCVIGIIILLAGKCR 44 (74)
T ss_dssp HHHHHHHHHHHHHHTTTC--
T ss_pred hhHHHHHHHHHHHHHcCccc
Confidence 45667778888888776544
No 14
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=28.55 E-value=33 Score=23.76 Aligned_cols=16 Identities=25% Similarity=0.366 Sum_probs=7.1
Q ss_pred cccccCCCccccccccc
Q 018256 341 PLLINKSNTEDSRATFA 357 (359)
Q Consensus 341 ~~~~~~~~~~~~~~~~~ 357 (359)
|+=.+++++.. +|.|.
T Consensus 62 Plyk~~ttt~~-nP~~~ 77 (79)
T 2knc_B 62 PLYKEATSTFT-NITYR 77 (79)
T ss_dssp CHHHHCSCCSC-CCSCC
T ss_pred CCccCCccCcc-CCCcC
Confidence 54444444433 45543
No 15
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=23.46 E-value=90 Score=19.80 Aligned_cols=14 Identities=7% Similarity=0.109 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHHHH
Q 018256 301 VGAATIALGFYAVI 314 (359)
Q Consensus 301 iG~~lii~gi~l~~ 314 (359)
+|+.++++-+....
T Consensus 20 l~GLllL~li~~~L 33 (54)
T 2knc_A 20 LGGLLLLTILVLAM 33 (54)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 34444443333333
No 16
>1w8x_P Protein P16, protein S, GPS; virus, P3 major capsid protein, P30 TAPE measure, P31 penton protein, P16 membrane protein; 4.20A {Enterobacteria phage PRD1} SCOP: i.6.1.1
Probab=22.58 E-value=1.7e+02 Score=20.18 Aligned_cols=25 Identities=12% Similarity=0.130 Sum_probs=17.5
Q ss_pred cchhhHHHHHHHHHHHHHHHhcCcc
Q 018256 295 LYLGSFVGAATIALGFYAVIWGQAK 319 (359)
Q Consensus 295 ~~~~~~iG~~lii~gi~l~~~~~~~ 319 (359)
-....|+|+.++++=+++..+.+..
T Consensus 4 kkllywvggglvliliwlwfrnrpa 28 (117)
T 1w8x_P 4 KKLLYWVGGGLVLILIWLWFRNRPA 28 (117)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHHTTC
T ss_pred ceeEeEecCchhhHHHHHHHccChH
Confidence 3456789999888777776655443
Done!