Query 018256
Match_columns 359
No_of_seqs 135 out of 1632
Neff 9.1
Searched_HMMs 13730
Date Mon Mar 25 12:23:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018256.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/018256hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1pw4a_ f.38.1.1 (A:) Glycerol 48.5 69 0.005 26.4 14.3 37 186-223 70-106 (447)
2 d1iwga8 f.35.1.1 (A:513-566,A: 41.1 72 0.0053 24.5 9.4 26 282-307 96-121 (222)
3 d2e74g1 f.23.26.1 (G:9-35) Pet 17.8 57 0.0042 15.6 2.9 16 176-191 3-18 (27)
4 d1pv7a_ f.38.1.2 (A:) Lactose 11.3 3.3E+02 0.024 21.0 11.4 33 8-40 15-49 (417)
5 d1pw4a_ f.38.1.1 (A:) Glycerol 11.1 3.6E+02 0.026 21.4 24.9 14 32-45 115-128 (447)
6 d1kqfb2 f.23.22.1 (B:246-290) 9.6 1.6E+02 0.012 16.4 3.3 26 290-315 7-32 (45)
7 d1iwga7 f.35.1.1 (A:7-37,A:331 6.2 1.8E+02 0.013 21.5 3.4 20 288-307 84-103 (199)
8 d1fftb2 f.17.2.1 (B:27-117) Cy 5.3 1.6E+02 0.011 18.9 2.0 16 306-321 31-46 (91)
9 d2iuba2 f.17.3.1 (A:286-349) M 5.0 2.4E+02 0.018 16.4 2.7 14 306-319 50-63 (64)
10 d3dtub2 f.17.2.1 (B:30-129) Ba 3.6 2.8E+02 0.02 17.8 2.4 17 303-319 39-55 (100)
No 1
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=48.53 E-value=69 Score=26.44 Aligned_cols=37 Identities=3% Similarity=-0.062 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHH
Q 018256 186 VILAIYYIVQAWIVRDYPAELMVTLICSIFVTILSSAV 223 (359)
Q Consensus 186 ~~~a~~~vl~k~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (359)
+.+++......++..++. .-.......+...+.....
T Consensus 70 ~~~~~~~~~~G~l~Dr~g-~r~~~~~~~~~~~~~~~~~ 106 (447)
T d1pw4a_ 70 IAYGFSKFIMGSVSDRSN-PRVFLPAGLILAAAVMLFM 106 (447)
T ss_dssp HHHHHHHHHHHHHHHHSC-HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcC-chHHHHHHHHHHHHHHhhc
Confidence 334444445555555555 3333444444444433333
No 2
>d1iwga8 f.35.1.1 (A:513-566,A:869-1036) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]}
Probab=41.13 E-value=72 Score=24.52 Aligned_cols=26 Identities=23% Similarity=0.152 Sum_probs=18.6
Q ss_pred HHHHHHHHHhcCccchhhHHHHHHHH
Q 018256 282 VALVFGIAFLGDTLYLGSFVGAATIA 307 (359)
Q Consensus 282 ~~~i~~~~~~ge~~~~~~~iG~~lii 307 (359)
.+.+.+..+.+.+++....+|.++.+
T Consensus 96 ~~~~~~l~~~g~~~~~~~~~g~i~l~ 121 (222)
T d1iwga8 96 IGALLAATFRGLTNDVYFQVGLLTTI 121 (222)
T ss_dssp HHHHHHHHHTTCCBCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCchhhhhcccccchh
Confidence 34455666788899988888877644
No 3
>d2e74g1 f.23.26.1 (G:9-35) PetG subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=17.77 E-value=57 Score=15.63 Aligned_cols=16 Identities=25% Similarity=0.511 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHH
Q 018256 176 IGGIFLAAHSVILAIY 191 (359)
Q Consensus 176 ~G~~~~l~a~~~~a~~ 191 (359)
+|.++.-+++++||.|
T Consensus 3 lgli~~tl~glf~aay 18 (27)
T d2e74g1 3 LGLVFATLGGLFYAAY 18 (27)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred eeehHHHHHHHHHHHH
Confidence 5777888888889887
No 4
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}
Probab=11.26 E-value=3.3e+02 Score=21.03 Aligned_cols=33 Identities=6% Similarity=-0.201 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH-h-CCCChHHHHHHH
Q 018256 8 AMVTLEFLDVGLNTVTKAAM-S-RGASHFILVVYS 40 (359)
Q Consensus 8 ~~l~~~~~~g~~~~~~k~~~-~-~~~~p~~~~~~R 40 (359)
..++..+.++....+....+ + .+.++.+....-
T Consensus 15 ~~f~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~i~ 49 (417)
T d1pv7a_ 15 FFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIF 49 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHH
Confidence 33444455555544433222 2 267877765543
No 5
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=11.14 E-value=3.6e+02 Score=21.43 Aligned_cols=14 Identities=14% Similarity=-0.050 Sum_probs=7.7
Q ss_pred ChHHHHHHHHHHHH
Q 018256 32 SHFILVVYSNTLAI 45 (359)
Q Consensus 32 ~p~~~~~~R~~~a~ 45 (359)
+...+...|.+.+.
T Consensus 115 ~~~~~~~~~~~~g~ 128 (447)
T d1pw4a_ 115 SIAVMFVLLFLCGW 128 (447)
T ss_dssp SSSHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHH
Confidence 44455666665544
No 6
>d1kqfb2 f.23.22.1 (B:246-290) Iron-sulfur subunit of formate dehydrogenase N, transmembrane anchor {Escherichia coli [TaxId: 562]}
Probab=9.64 E-value=1.6e+02 Score=16.40 Aligned_cols=26 Identities=12% Similarity=-0.047 Sum_probs=17.6
Q ss_pred HhcCccchhhHHHHHHHHHHHHHHHh
Q 018256 290 FLGDTLYLGSFVGAATIALGFYAVIW 315 (359)
Q Consensus 290 ~~ge~~~~~~~iG~~lii~gi~l~~~ 315 (359)
++.+...+...+|++..+++.++.-.
T Consensus 7 lWKgv~Kpl~~~~~~~~~~~~~fHYv 32 (45)
T d1kqfb2 7 LWKGALKPLAAAGFIATFAGLIFHYI 32 (45)
T ss_dssp HHHTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhhHHHHHHHHHHHHHHHHHHhhh
Confidence 45666677777888777776665543
No 7
>d1iwga7 f.35.1.1 (A:7-37,A:331-498) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]}
Probab=6.20 E-value=1.8e+02 Score=21.48 Aligned_cols=20 Identities=15% Similarity=0.177 Sum_probs=11.6
Q ss_pred HHHhcCccchhhHHHHHHHH
Q 018256 288 IAFLGDTLYLGSFVGAATIA 307 (359)
Q Consensus 288 ~~~~ge~~~~~~~iG~~lii 307 (359)
..++|..++.....+..+.+
T Consensus 84 m~~~g~~l~~~s~~~~~i~i 103 (199)
T d1iwga7 84 LAAFGFSINTLTMFGMVLAI 103 (199)
T ss_dssp HHTTTCCSCHHHHHHHHHHH
T ss_pred hhcCCCchHHHHHHHHHHHH
Confidence 34566666766665555444
No 8
>d1fftb2 f.17.2.1 (B:27-117) Cytochrome O ubiquinol oxidase, subunit II {Escherichia coli [TaxId: 562]}
Probab=5.26 E-value=1.6e+02 Score=18.90 Aligned_cols=16 Identities=6% Similarity=-0.205 Sum_probs=7.9
Q ss_pred HHHHHHHHHhcCcccc
Q 018256 306 IALGFYAVIWGQAKEE 321 (359)
Q Consensus 306 ii~gi~l~~~~~~~~~ 321 (359)
++.|..++...|.|++
T Consensus 31 ~V~~~~~~~~~ryR~~ 46 (91)
T d1fftb2 31 PAILMAVGFAWKYRAS 46 (91)
T ss_dssp HHHHHHHTTTTTTTTS
T ss_pred HHHHHHHhhheeeecc
Confidence 4445555555555443
No 9
>d2iuba2 f.17.3.1 (A:286-349) Magnesium transport protein CorA {Thermotoga maritima [TaxId: 2336]}
Probab=4.98 E-value=2.4e+02 Score=16.43 Aligned_cols=14 Identities=14% Similarity=0.176 Sum_probs=5.8
Q ss_pred HHHHHHHHHhcCcc
Q 018256 306 IALGFYAVIWGQAK 319 (359)
Q Consensus 306 ii~gi~l~~~~~~~ 319 (359)
+..++.+..+.++|
T Consensus 50 ~~~~~~~~~~f~rk 63 (64)
T d2iuba2 50 GVIAVIMVVYFKKK 63 (64)
T ss_dssp HHHHHHHHTTTTSC
T ss_pred HHHHHHHHHHHhcc
Confidence 33444444444433
No 10
>d3dtub2 f.17.2.1 (B:30-129) Bacterial aa3 type cytochrome c oxidase subunit II {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=3.61 E-value=2.8e+02 Score=17.80 Aligned_cols=17 Identities=0% Similarity=-0.271 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHhcCcc
Q 018256 303 AATIALGFYAVIWGQAK 319 (359)
Q Consensus 303 ~~lii~gi~l~~~~~~~ 319 (359)
..+++.+...+...++|
T Consensus 39 I~~~V~~~l~~~~~~~r 55 (100)
T d3dtub2 39 ITIFVTLLILYAVWRFH 55 (100)
T ss_dssp HHHHHHHHHHHHHHHHB
T ss_pred HHHHHHHHHHHHhhhhh
Confidence 33344455544443333
Done!