Query 018257
Match_columns 359
No_of_seqs 281 out of 1264
Neff 6.5
Searched_HMMs 46136
Date Fri Mar 29 07:28:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018257.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018257hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03193 beta-1,3-galactosyltr 100.0 1.3E-99 3E-104 746.3 31.2 359 1-359 39-408 (408)
2 KOG2288 Galactosyltransferases 100.0 1E-72 2.2E-77 520.3 17.3 265 87-359 8-273 (274)
3 PLN03133 beta-1,3-galactosyltr 100.0 6.5E-55 1.4E-59 451.5 22.1 236 86-358 381-624 (636)
4 KOG2287 Galactosyltransferases 100.0 3.7E-54 8.1E-59 424.7 21.5 239 89-357 94-336 (349)
5 PF01762 Galactosyl_T: Galacto 100.0 3.1E-49 6.7E-54 359.1 17.2 191 104-302 1-195 (195)
6 PTZ00210 UDP-GlcNAc-dependent 100.0 1.5E-33 3.4E-38 274.8 18.1 194 83-295 73-307 (382)
7 PF02434 Fringe: Fringe-like; 99.8 2.1E-19 4.5E-24 170.3 12.0 191 91-309 7-210 (252)
8 KOG2246 Galactosyltransferases 99.7 1.9E-16 4.2E-21 157.0 14.6 170 85-301 86-268 (364)
9 PF13334 DUF4094: Domain of un 99.6 4.9E-16 1.1E-20 126.1 5.0 64 1-65 23-95 (95)
10 PLN03153 hypothetical protein; 99.2 2.1E-10 4.5E-15 117.0 14.2 183 90-307 122-318 (537)
11 KOG3708 Uncharacterized conser 97.9 2.4E-05 5.2E-10 79.7 7.0 194 91-354 27-239 (681)
12 PF01755 Glyco_transf_25: Glyc 95.5 0.33 7.2E-06 43.7 12.9 93 94-203 4-101 (200)
13 PF13641 Glyco_tranf_2_3: Glyc 94.5 1 2.2E-05 40.6 13.3 157 128-297 30-198 (228)
14 TIGR03472 HpnI hopanoid biosyn 94.2 1.5 3.3E-05 43.6 14.8 161 128-297 70-241 (373)
15 TIGR03469 HonB hopene-associat 93.6 3.4 7.4E-05 41.4 16.1 160 128-295 70-248 (384)
16 PF13506 Glyco_transf_21: Glyc 93.1 0.16 3.4E-06 45.5 5.1 122 173-300 17-145 (175)
17 cd04192 GT_2_like_e Subfamily 92.7 3.6 7.9E-05 36.6 13.5 166 129-301 29-203 (229)
18 cd02525 Succinoglycan_BP_ExoA 92.1 8.8 0.00019 34.5 15.6 160 127-298 30-197 (249)
19 cd02510 pp-GalNAc-T pp-GalNAc- 91.8 12 0.00026 35.7 16.5 123 179-301 75-219 (299)
20 PF00535 Glycos_transf_2: Glyc 91.5 4.3 9.4E-05 33.5 11.7 132 128-270 27-168 (169)
21 cd02520 Glucosylceramide_synth 91.3 9.9 0.00021 33.6 15.9 134 128-297 30-165 (196)
22 PRK11204 N-glycosyltransferase 90.0 20 0.00044 35.8 17.0 192 89-302 53-255 (420)
23 cd04196 GT_2_like_d Subfamily 89.9 8.7 0.00019 33.7 12.8 177 107-301 11-197 (214)
24 cd06421 CESA_CelA_like CESA_Ce 89.7 13 0.00029 33.1 14.1 120 179-304 76-208 (234)
25 cd04186 GT_2_like_c Subfamily 87.0 16 0.00035 30.2 13.7 81 185-297 72-153 (166)
26 cd06423 CESA_like CESA_like is 86.5 14 0.0003 30.3 11.3 94 178-271 69-170 (180)
27 PF04646 DUF604: Protein of un 86.4 1.1 2.3E-05 42.9 4.6 51 256-306 12-66 (255)
28 cd06439 CESA_like_1 CESA_like_ 86.4 25 0.00055 31.9 13.9 119 179-303 101-225 (251)
29 cd06532 Glyco_transf_25 Glycos 86.2 7.9 0.00017 32.6 9.6 116 95-276 3-119 (128)
30 cd04187 DPM1_like_bac Bacteria 85.9 9.6 0.00021 32.9 10.3 134 128-272 29-164 (181)
31 cd04185 GT_2_like_b Subfamily 84.5 27 0.00059 30.6 13.8 91 176-295 69-160 (202)
32 cd06434 GT2_HAS Hyaluronan syn 82.7 11 0.00023 33.9 9.5 152 129-297 29-201 (235)
33 cd06433 GT_2_WfgS_like WfgS an 81.9 9.8 0.00021 32.7 8.6 113 178-297 66-182 (202)
34 PF13632 Glyco_trans_2_3: Glyc 80.4 5.3 0.00012 35.1 6.5 117 190-310 1-127 (193)
35 cd06435 CESA_NdvC_like NdvC_li 79.7 46 0.001 29.9 14.1 114 178-297 73-197 (236)
36 cd06420 GT2_Chondriotin_Pol_N 78.8 12 0.00027 32.0 8.2 96 179-295 71-166 (182)
37 COG1215 Glycosyltransferases, 75.3 75 0.0016 31.6 13.8 194 90-302 54-260 (439)
38 cd04195 GT2_AmsE_like GT2_AmsE 73.4 61 0.0013 28.1 12.4 114 179-301 72-195 (201)
39 cd02526 GT2_RfbF_like RfbF is 73.2 69 0.0015 28.6 12.8 118 176-296 65-191 (237)
40 COG1216 Predicted glycosyltran 72.6 26 0.00056 33.7 9.4 138 156-296 55-207 (305)
41 PF03071 GNT-I: GNT-I family; 71.7 39 0.00085 34.9 10.7 86 176-273 176-272 (434)
42 PRK14583 hmsR N-glycosyltransf 69.1 1.4E+02 0.003 30.4 18.2 156 128-301 104-275 (444)
43 TIGR03111 glyc2_xrt_Gpos1 puta 68.4 1.4E+02 0.0031 30.4 14.2 126 178-306 122-266 (439)
44 cd04184 GT2_RfbC_Mx_like Myxoc 67.8 81 0.0018 27.3 16.6 111 178-297 74-189 (202)
45 PRK10714 undecaprenyl phosphat 65.5 1.4E+02 0.003 29.2 13.4 135 127-272 37-174 (325)
46 cd02514 GT13_GLCNAC-TI GT13_GL 64.8 24 0.00051 35.2 7.3 82 177-270 87-174 (334)
47 cd06442 DPM1_like DPM1_like re 62.9 1.1E+02 0.0023 27.0 12.1 85 186-271 77-167 (224)
48 PHA01631 hypothetical protein 61.9 20 0.00042 32.3 5.5 92 156-273 39-133 (176)
49 PF10111 Glyco_tranf_2_2: Glyc 61.2 1.5E+02 0.0033 28.1 14.8 165 126-298 32-211 (281)
50 cd04191 Glucan_BSP_ModH Glucan 60.9 1.5E+02 0.0033 28.0 13.9 121 169-297 76-219 (254)
51 cd02522 GT_2_like_a GT_2_like_ 60.0 54 0.0012 28.9 8.3 105 181-297 66-175 (221)
52 cd04179 DPM_DPG-synthase_like 59.0 1.1E+02 0.0024 25.9 10.0 132 128-271 28-167 (185)
53 TIGR01556 rhamnosyltran L-rham 53.4 96 0.0021 29.0 9.2 115 178-295 65-187 (281)
54 cd04190 Chitin_synth_C C-termi 52.7 25 0.00054 32.5 5.0 111 185-295 71-206 (244)
55 cd06437 CESA_CaSu_A2 Cellulose 52.4 1.7E+02 0.0038 26.1 15.3 118 179-302 79-208 (232)
56 cd04188 DPG_synthase DPG_synth 51.9 1.7E+02 0.0036 25.8 10.5 89 127-223 29-119 (211)
57 PLN02726 dolichyl-phosphate be 51.5 1.9E+02 0.0042 26.3 15.6 157 128-299 40-210 (243)
58 KOG2547 Ceramide glucosyltrans 45.6 21 0.00045 36.2 3.3 41 187-229 170-210 (431)
59 cd00761 Glyco_tranf_GTA_type G 44.0 1.6E+02 0.0034 23.1 11.8 33 179-211 69-101 (156)
60 TIGR03030 CelA cellulose synth 38.9 5.6E+02 0.012 28.1 15.7 133 170-306 212-357 (713)
61 PRK05454 glucosyltransferase M 33.5 4.8E+02 0.01 28.7 11.7 198 87-301 121-350 (691)
62 cd06438 EpsO_like EpsO protein 32.2 3.3E+02 0.0071 23.4 10.4 89 177-269 70-169 (183)
63 COG4092 Predicted glycosyltran 31.9 2.1E+02 0.0046 28.0 7.6 80 126-210 36-117 (346)
64 PF09258 Glyco_transf_64: Glyc 31.1 59 0.0013 30.8 3.8 101 186-292 74-180 (247)
65 PF04666 Glyco_transf_54: N-Ac 26.9 3.5E+02 0.0077 26.5 8.5 120 87-209 49-191 (297)
66 cd06427 CESA_like_2 CESA_like_ 25.8 4.9E+02 0.011 23.4 13.1 121 178-301 75-206 (241)
67 PLN03181 glycosyltransferase; 25.2 4.6E+02 0.01 27.2 9.1 93 106-201 108-212 (453)
68 PF03490 Varsurf_PPLC: Variant 22.7 71 0.0015 23.0 2.0 26 111-139 9-34 (51)
69 cd06913 beta3GnTL1_like Beta 1 22.2 5.4E+02 0.012 22.6 11.6 43 180-222 77-119 (219)
70 PF07507 WavE: WavE lipopolysa 21.8 1.3E+02 0.0029 29.6 4.5 37 174-214 86-122 (311)
71 PLN03182 xyloglucan 6-xylosylt 21.2 6.8E+02 0.015 25.9 9.4 93 107-200 106-210 (429)
72 PF04508 Pox_A_type_inc: Viral 20.8 1.2E+02 0.0025 18.4 2.3 19 45-63 3-21 (23)
No 1
>PLN03193 beta-1,3-galactosyltransferase; Provisional
Probab=100.00 E-value=1.3e-99 Score=746.26 Aligned_cols=359 Identities=71% Similarity=1.218 Sum_probs=331.3
Q ss_pred CCCCCccccccccccc--------ccCCchhh---hhhccccchHHHHHHhHHHHHHHHHHhHHHHhhhhhhhhhccccc
Q 018257 1 MWMMPESKGVARISKT--------EEIENPEL---KAVKHESNNNTEKLAMVEQAIQSQDKRLDGLKTKITAVRAERDSV 69 (359)
Q Consensus 1 ~~~~~~~~~~~~~~~~--------~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~el~~~~~~~~~~ 69 (359)
||++||++++.+++++ ++||++|+ |..+++++|||+||++||+|||+|+|+|+.||||||+|++.+..+
T Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~t~~~~~~~~~~~~~le~el~~~~~~~~~~ 118 (408)
T PLN03193 39 MWTIPESKGISRTTVTEAERLKLVSEGCDPKTLYQKEVKRDSKDIIGEVSKTHNAIQTLDKTISNLEMELAAARAAQESI 118 (408)
T ss_pred cccCCccccccccccchhhhhhhhccccccccccccccccchhHHHHHHhhHHHHHHHHhhhhhHHhHHHHHHHhhhhhh
Confidence 7999999998765544 27999877 666679999999999999999999999999999999999977666
Q ss_pred cCCCCCCCCccCCCCCCCCceeEEEEEeCCCCCHHHHHHHHHHhhhcchhhhhhhccCceEEEEEeccCCCCCchhHHHH
Q 018257 70 SLSHPVKGTSNISGSMLKRKYFMVIGINTAFSSRKRRDSVRATWMPQGEKRKMLEEAKGIIIRFVIGHSATSGGILDKAI 149 (359)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~lli~V~S~~~~~~rR~aIR~TW~~~~~~l~~l~~~~~i~v~FvlG~s~~~~~~~~~~I 149 (359)
.++.|.+++....+...+++++|||+|+|+|+|++||++||+|||+.+..+.+++.+.+++++||||++.++++.++++|
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~LvIgI~Sap~~~~RR~AIR~TWg~~~~~~~kle~~~gv~vrFVIG~s~~~~~~ldr~L 198 (408)
T PLN03193 119 LNGSPISEDLKKTQSSGKRRYLMVVGINTAFSSRKRRDSVRATWMPQGEKRKKLEEEKGIIIRFVIGHSATSGGILDRAI 198 (408)
T ss_pred ccCCCccccccccCCCCcceEEEEEEEeCCCCCHHHHHHHHHHHcCCcccccccccCCcEEEEEEeecCCCcchHHHHHH
Confidence 66666543333334566888999999999999999999999999999877777777889999999999987667899999
Q ss_pred HHHHhhcCCEEEecccccCcchhHHHHHHHHHHHhcCCceEEEEeccceeeeHHHHHHHHhhcCCCCCeeEEecccCccc
Q 018257 150 DAEEKMHGDFLRLEHIEGYLELSAKTKTYFATAVSMWDAEFYIKVDDDVHVNLATLGMTLAAHRTKPRVYVGCMKSGPVL 229 (359)
Q Consensus 150 ~~E~~~~~Dil~~df~DsY~nLt~Kt~~~~~wa~~~~~a~fvlKvDDDvfVn~~~L~~~L~~~~~~~~ly~G~~~~~pv~ 229 (359)
++|+++|||||++||+|+|.|||+||+++|+||.++++|+||||+|||+|||+++|+.+|+.+..++++|+|||+++|++
T Consensus 199 e~Ea~~ygDIL~lDfvDsY~NLT~KTl~~f~wA~~~~dAkF~mK~DDDvfVnv~~L~~~L~~~~~~~rlYiG~m~~gPvr 278 (408)
T PLN03193 199 EAEDRKHGDFLRLDHVEGYLELSAKTKTYFATAVAMWDADFYVKVDDDVHVNIATLGETLVRHRKKPRVYIGCMKSGPVL 278 (408)
T ss_pred HHHHHHhCCEEEEecccccccchHHHHHHHHHHHHcCCCeEEEEcCCCceEcHHHHHHHHHhcCCCCCEEEEecccCccc
Confidence 99999999999999999999999999999999999999999999999999999999999998877788999999988987
Q ss_pred ccCCCccccCccccccCCCCccccccCCCeeeeCHHHHHHHHHhccccCCCCcchHHHHHHHhcCCCeEecCCCcccCCC
Q 018257 230 ARKGVKYYEPEYWKFGEIGNKYFRHATGQLYALSKDLATYISINQHLLHKYANEDVSLGSWFIGLDVEHVDDRRLCCGTP 309 (359)
Q Consensus 230 r~~~~K~~~p~~~~f~~p~~~Yp~y~~G~gYvlS~dla~~i~~~~~~l~~~~~EDV~vG~~l~~l~v~~~~~~~f~~~~~ 309 (359)
.++++|||+|++|+||++++.|||||+|+|||||+|+|++|+.+...++.|++|||+||+||.+|+|+|+|+++|||+++
T Consensus 279 ~~~~~ky~epe~w~~~~~~~~YPpyAsG~gYVlS~DLa~~I~~n~~~L~~y~~EDV~vG~Wl~~L~V~~vdd~~fcc~~~ 358 (408)
T PLN03193 279 SQKGVRYHEPEYWKFGENGNKYFRHATGQLYAISKDLASYISINQHVLHKYANEDVSLGSWFIGLDVEHIDDRRLCCGTP 358 (408)
T ss_pred cCCCCcCcCcccccccCccccCCCCCCcceEEehHHHHHHHHhChhhhcccCcchhhhhhHhccCCceeeecccccCCCC
Confidence 77888999999999998899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccccccCCcccccccccccccchhhHHHHHhhccCccchHHhhhhcC
Q 018257 310 PDCEWKAQLGKTCVATFDWRCSGICKSVERIKEVHELCGEGEDTLWRASF 359 (359)
Q Consensus 310 ~~~~~k~~~~~~C~~~f~~~~~g~~~~~~~~~~vH~~~~~~~~~~W~~~~ 359 (359)
|+|+||++++++|+++|||+|+|||++.+||..||+.|+++..++|+++|
T Consensus 359 ~~C~~~~~~~~~c~~~~~~~csg~c~~~~~~~~~h~~c~~~~~~~~~~~~ 408 (408)
T PLN03193 359 PDCEWKAQAGNICVASFDWSCSGICRSADRIKEVHRRCGEGENALWSATF 408 (408)
T ss_pred ccccccccCCCeeEEEecccCcccCCHHHHHHHHHHhcCCCcccceeecC
Confidence 99999999999999999999999999999999999999999999999876
No 2
>KOG2288 consensus Galactosyltransferases [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1e-72 Score=520.29 Aligned_cols=265 Identities=68% Similarity=1.140 Sum_probs=255.4
Q ss_pred CCceeEEEEEeCCCCCHHHHHHHHHHhhhcchhhhhhhccCceEEEEEeccCCCCCchhHHHHHHHHhhcCCEEEec-cc
Q 018257 87 KRKYFMVIGINTAFSSRKRRDSVRATWMPQGEKRKMLEEAKGIIIRFVIGHSATSGGILDKAIDAEEKMHGDFLRLE-HI 165 (359)
Q Consensus 87 ~~~~~lli~V~S~~~~~~rR~aIR~TW~~~~~~l~~l~~~~~i~v~FvlG~s~~~~~~~~~~I~~E~~~~~Dil~~d-f~ 165 (359)
+++++++|+|.|++++.+||+++|+||++.++.+++++.+++|.++||||+. +.+++++++|++|+++|+|+|.+| ++
T Consensus 8 ~~k~l~vigI~T~f~s~~RR~~vR~TWmp~~~~l~rle~e~gv~~RFvIG~~-~~g~~~~r~ie~E~~~~~DfllLd~h~ 86 (274)
T KOG2288|consen 8 RRKVLLVIGINTAFSSRKRRDSVRQTWMPSGEGLKRLEEEKGVIIRFVIGTA-TLGASLDRALEEENAQHGDFLLLDRHE 86 (274)
T ss_pred ccceEEEEEeecccchhhhHHHHHHhhcCCccchhhhccccceEEEEEeccC-CccHHHHHHHHHHHHhcCCeEeechhH
Confidence 7799999999999999999999999999999999999999999999999994 447899999999999999999999 99
Q ss_pred ccCcchhHHHHHHHHHHHhcCCceEEEEeccceeeeHHHHHHHHhhcCCCCCeeEEecccCcccccCCCccccCcccccc
Q 018257 166 EGYLELSAKTKTYFATAVSMWDAEFYIKVDDDVHVNLATLGMTLAAHRTKPRVYVGCMKSGPVLARKGVKYYEPEYWKFG 245 (359)
Q Consensus 166 DsY~nLt~Kt~~~~~wa~~~~~a~fvlKvDDDvfVn~~~L~~~L~~~~~~~~ly~G~~~~~pv~r~~~~K~~~p~~~~f~ 245 (359)
|+|.+|+.||+.+|.+|..+|+++||+|+|||+|||++.|...|++++.++++|||||++|||+.++++|||+|+ |+||
T Consensus 87 E~Y~~Ls~Kt~~~f~~A~~~~daeFyvKvDDDv~v~l~~L~~~la~~r~~pr~YiGcmksg~v~~~~~~kw~Epe-Wkfg 165 (274)
T KOG2288|consen 87 EAYEELSAKTKAFFSAAVAHWDAEFYVKVDDDVYVRLARLGTLLARERSHPRLYIGCMKSGPVLTQPGGKWYEPE-WKFG 165 (274)
T ss_pred HHHHHHHHHHHHHHHHHHHhccceEEEEccccceecHHHHHHHHHhhccCCceEEEEecCCccccCCCCcccChh-hhcC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999 9999
Q ss_pred CCCCccccccCCCeeeeCHHHHHHHHHhccccCCCCcchHHHHHHHhcCCCeEecCCCcccCCCCCcccccccCCccccc
Q 018257 246 EIGNKYFRHATGQLYALSKDLATYISINQHLLHKYANEDVSLGSWFIGLDVEHVDDRRLCCGTPPDCEWKAQLGKTCVAT 325 (359)
Q Consensus 246 ~p~~~Yp~y~~G~gYvlS~dla~~i~~~~~~l~~~~~EDV~vG~~l~~l~v~~~~~~~f~~~~~~~~~~k~~~~~~C~~~ 325 (359)
+.++ |+||+.|++||||++||.+|+.|+..++.|.+|||+||.||++|+|+|+||+++||+++ |++.+++|.++
T Consensus 166 ~~g~-YfrhA~G~~YvlS~dLa~yi~in~~lL~~y~nEDVSlGaW~~gldV~h~dd~rlC~~~~-----~~~~~~~~~~~ 239 (274)
T KOG2288|consen 166 DNGN-YFRHATGGGYVLSKDLATYISINRQLLHKYANEDVSLGAWMIGLDVEHVDDPRLCCSTP-----KALAGMVCAAS 239 (274)
T ss_pred cccc-cchhccCceEEeeHHHHHHHHHhHHHHHhhccCCcccceeeeeeeeeEecCCcccccch-----hhhccceeeee
Confidence 9777 99999999999999999999999999999999999999999999999999999999764 77899999999
Q ss_pred ccccccccchhhHHHHHhhccCccchHHhhhhcC
Q 018257 326 FDWRCSGICKSVERIKEVHELCGEGEDTLWRASF 359 (359)
Q Consensus 326 f~~~~~g~~~~~~~~~~vH~~~~~~~~~~W~~~~ 359 (359)
|+|+|+|+|++..+|..+|..|.+...+.|...|
T Consensus 240 ~~~kcsglC~~~~rm~~~h~~~~~~~~~~~~~~~ 273 (274)
T KOG2288|consen 240 FDWKCSGLCKSEDRMLEVHKYDWEGKPATCCSRF 273 (274)
T ss_pred ecccccccCchHHHHhHHHHhhccCCCcccCccc
Confidence 9999999999999999999999999999987754
No 3
>PLN03133 beta-1,3-galactosyltransferase; Provisional
Probab=100.00 E-value=6.5e-55 Score=451.51 Aligned_cols=236 Identities=22% Similarity=0.335 Sum_probs=207.8
Q ss_pred CCCceeEEEEEeCCCCCHHHHHHHHHHhhhcchhhhhhhccCceEEEEEeccCCCCCchhHHHHHHHHhhcCCEEEeccc
Q 018257 86 LKRKYFMVIGINTAFSSRKRRDSVRATWMPQGEKRKMLEEAKGIIIRFVIGHSATSGGILDKAIDAEEKMHGDFLRLEHI 165 (359)
Q Consensus 86 ~~~~~~lli~V~S~~~~~~rR~aIR~TW~~~~~~l~~l~~~~~i~v~FvlG~s~~~~~~~~~~I~~E~~~~~Dil~~df~ 165 (359)
++++++|||+|+|+|+|++||+|||+|||+... ..+..++++|++|.+. ++.++.+|.+|+++||||||+||.
T Consensus 381 ~~~~~~LlI~V~Sap~nf~rR~AIR~TWg~~~~-----~~~~~v~~rFvVG~s~--n~~l~~~L~~Ea~~ygDIIq~dF~ 453 (636)
T PLN03133 381 PKKPLDLFIGVFSTANNFKRRMAVRRTWMQYDA-----VRSGAVAVRFFVGLHK--NQMVNEELWNEARTYGDIQLMPFV 453 (636)
T ss_pred CCCceEEEEEEeCCcccHHHHHHHHHhhccccc-----cCCCceEEEEEEecCC--cHHHHHHHHHHHHHcCCeEEEeee
Confidence 356799999999999999999999999999743 2345699999999986 467899999999999999999999
Q ss_pred ccCcchhHHHHHHHHHHHhcCCceEEEEeccceeeeHHHHHHHHhhcCCCCCeeEEecc-cCcccccCCCccccCccccc
Q 018257 166 EGYLELSAKTKTYFATAVSMWDAEFYIKVDDDVHVNLATLGMTLAAHRTKPRVYVGCMK-SGPVLARKGVKYYEPEYWKF 244 (359)
Q Consensus 166 DsY~nLt~Kt~~~~~wa~~~~~a~fvlKvDDDvfVn~~~L~~~L~~~~~~~~ly~G~~~-~~pv~r~~~~K~~~p~~~~f 244 (359)
|+|+|||+||++++.|+..|++++|+||+|||+|||+++|+++|......+++|+|++. ...|+|++.+|||+|.+.|
T Consensus 454 DsY~NLTlKtl~~~~wa~~c~~akFilK~DDDvFVnv~~Ll~~L~~~~~~~~Ly~G~v~~~~~PiRd~~sKWYVs~~ey- 532 (636)
T PLN03133 454 DYYSLITWKTLAICIFGTEVVSAKYVMKTDDDAFVRVDEVLASLKRTNVSHGLLYGLINSDSQPHRNPDSKWYISPEEW- 532 (636)
T ss_pred chhhhhHHHHHHHHHHHHhCCCceEEEEcCCceEEcHHHHHHHHHhcCCCCceEEEEeccCCCcccCCCCCCCCCHHHC-
Confidence 99999999999999999889999999999999999999999999877667789999986 4578899999999998877
Q ss_pred cCCCCccccccCCCeeeeCHHHHHHHHHhc--cccCCCCcchHHHHHHHh-----cCCCeEecCCCcccCCCCCcccccc
Q 018257 245 GEIGNKYFRHATGQLYALSKDLATYISINQ--HLLHKYANEDVSLGSWFI-----GLDVEHVDDRRLCCGTPPDCEWKAQ 317 (359)
Q Consensus 245 ~~p~~~Yp~y~~G~gYvlS~dla~~i~~~~--~~l~~~~~EDV~vG~~l~-----~l~v~~~~~~~f~~~~~~~~~~k~~ 317 (359)
|.+.|||||+|+|||||+++|++|+.++ ..++.|++||||||+|+. ++.+.+.++.+||+.
T Consensus 533 --p~~~YPpYasG~gYVlS~Dla~~L~~~s~s~~l~~f~lEDVyvGi~l~~l~k~gl~v~~~~~~r~~~~---------- 600 (636)
T PLN03133 533 --PEETYPPWAHGPGYVVSRDIAKEVYKRHKEGRLKMFKLEDVAMGIWIAEMKKEGLEVKYENDGRIYNE---------- 600 (636)
T ss_pred --CCCCCCCCCCcCEEEEcHHHHHHHHHhhhhcccCcCChhhHhHHHHHHHhcccCCCceeeCCCcccCC----------
Confidence 8889999999999999999999999864 579999999999999985 556777777777542
Q ss_pred cCCcccccccccccccchhhHHHHHhhccCccchHHhhhhc
Q 018257 318 LGKTCVATFDWRCSGICKSVERIKEVHELCGEGEDTLWRAS 358 (359)
Q Consensus 318 ~~~~C~~~f~~~~~g~~~~~~~~~~vH~~~~~~~~~~W~~~ 358 (359)
.|. ..++.+|..+|++|..+|+..
T Consensus 601 ---~C~--------------~~~i~~H~~sP~eM~~lW~~l 624 (636)
T PLN03133 601 ---GCK--------------DGYVVAHYQSPREMLCLWQKL 624 (636)
T ss_pred ---cCC--------------CCeEEEecCCHHHHHHHHHHH
Confidence 243 235779999999999999863
No 4
>KOG2287 consensus Galactosyltransferases [Carbohydrate transport and metabolism]
Probab=100.00 E-value=3.7e-54 Score=424.67 Aligned_cols=239 Identities=24% Similarity=0.341 Sum_probs=218.7
Q ss_pred ceeEEEEEeCCCCCHHHHHHHHHHhhhcchhhhhhhccCceEEEEEeccCCCCCchhHHHHHHHHhhcCCEEEecccccC
Q 018257 89 KYFMVIGINTAFSSRKRRDSVRATWMPQGEKRKMLEEAKGIIIRFVIGHSATSGGILDKAIDAEEKMHGDFLRLEHIEGY 168 (359)
Q Consensus 89 ~~~lli~V~S~~~~~~rR~aIR~TW~~~~~~l~~l~~~~~i~v~FvlG~s~~~~~~~~~~I~~E~~~~~Dil~~df~DsY 168 (359)
.++++|+|+|++++++||++||+|||+... ..+..++++|++|.+++.+ .+++.|.+|++.||||||+||.|+|
T Consensus 94 ~~~lLl~V~S~~~~farR~aiR~TW~~~~~-----v~~~~v~~~FLvG~~~~~~-~~~~~l~~Ea~~ygDIi~~df~Dty 167 (349)
T KOG2287|consen 94 PPELLLLVKSAPDNFARRNAIRKTWGNENN-----VRGGRVRVLFLVGLPSNED-KLNKLLADEARLYGDIIQVDFEDTY 167 (349)
T ss_pred CceEEEEEecCCCCHHHHHHHHHHhcCccc-----cCCCcEEEEEEecCCCcHH-HHHHHHHHHHHHhCCEEEEecccch
Confidence 489999999999999999999999999974 3567899999999998543 6689999999999999999999999
Q ss_pred cchhHHHHHHHHHHHh-cCCceEEEEeccceeeeHHHHHHHHhhc-CCCCCeeEEecc-cCcccccCCCccccCcccccc
Q 018257 169 LELSAKTKTYFATAVS-MWDAEFYIKVDDDVHVNLATLGMTLAAH-RTKPRVYVGCMK-SGPVLARKGVKYYEPEYWKFG 245 (359)
Q Consensus 169 ~nLt~Kt~~~~~wa~~-~~~a~fvlKvDDDvfVn~~~L~~~L~~~-~~~~~ly~G~~~-~~pv~r~~~~K~~~p~~~~f~ 245 (359)
.|||+||++++.|+.. |++|+|++|+|||+|||+++|+.+|..+ .+.+.+|.|.+. ..+|+|++.+|||+|+..|
T Consensus 168 ~nltlKtl~~l~w~~~~cp~akfi~K~DDDvfv~~~~L~~~L~~~~~~~~~~~~G~v~~~~~p~R~~~~KwyVp~~~y-- 245 (349)
T KOG2287|consen 168 FNLTLKTLAILLWGVSKCPDAKFILKIDDDVFVNPDNLLEYLDKLNDPSSDLYYGRVIQNAPPIRDKTSKWYVPESEY-- 245 (349)
T ss_pred hchHHHHHHHHHHHHhcCCcceEEEeccCceEEcHHHHHHHHhccCCCCcceEEEeecccCCCCCCCCCCCccCHHHC--
Confidence 9999999999999998 9999999999999999999999999999 788899999986 4688899999999999888
Q ss_pred CCCCccccccCCCeeeeCHHHHHHHHHhccccCCCCcchHHHHHHHhcC-CCeEecCCCcccCCCCCcccccccCCcccc
Q 018257 246 EIGNKYFRHATGQLYALSKDLATYISINQHLLHKYANEDVSLGSWFIGL-DVEHVDDRRLCCGTPPDCEWKAQLGKTCVA 324 (359)
Q Consensus 246 ~p~~~Yp~y~~G~gYvlS~dla~~i~~~~~~l~~~~~EDV~vG~~l~~l-~v~~~~~~~f~~~~~~~~~~k~~~~~~C~~ 324 (359)
|...|||||+|+|||||+++|+.|+.++..++.+++|||++|+|++.+ |+.+++...|.... ...++|.
T Consensus 246 -~~~~YP~Y~sG~gYvis~~~a~~l~~~s~~~~~~~iEDV~~g~~l~~~~gi~~~~~~~~~~~~--------~~~~~~~- 315 (349)
T KOG2287|consen 246 -PCSVYPPYASGPGYVISGDAARRLLKASKHLKFFPIEDVFVGGCLAEDLGIKPVNHPGFFEIP--------LSFDPCC- 315 (349)
T ss_pred -CCCCCCCcCCCceeEecHHHHHHHHHHhcCCCccchHHHHHHHHHHHhcCCCcccCccccccc--------ccCCCCc-
Confidence 888999999999999999999999999999999999999999999877 99999887754321 2446677
Q ss_pred cccccccccchhhHHHHHhhccCccchHHhhhh
Q 018257 325 TFDWRCSGICKSVERIKEVHELCGEGEDTLWRA 357 (359)
Q Consensus 325 ~f~~~~~g~~~~~~~~~~vH~~~~~~~~~~W~~ 357 (359)
++.++++|...|.+|..+|+.
T Consensus 316 ------------~~~~~~~H~~~p~e~~~~w~~ 336 (349)
T KOG2287|consen 316 ------------YRDLLAVHRLSPNEMIYLWKK 336 (349)
T ss_pred ------------ccceEEEecCCHHHHHHHHHH
Confidence 889999999999999999975
No 5
>PF01762 Galactosyl_T: Galactosyltransferase; InterPro: IPR002659 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 31 (GH31 from CAZY) comprises enzymes with a number of known activities; N-acetyllactosaminide beta-1,3-N-acetylglucosaminyltransferase (2.4.1.149 from EC); beta-1,3-galactosyltransferase (2.4.1 from EC); fucose-specific beta-1,3-N-acetylglucosaminyltransferase (2.4.1 from EC); globotriosylceramide beta-1,3-GalNAc transferase (2.4.1.79 from EC) [, ].; GO: 0008378 galactosyltransferase activity, 0006486 protein glycosylation, 0016020 membrane
Probab=100.00 E-value=3.1e-49 Score=359.11 Aligned_cols=191 Identities=29% Similarity=0.404 Sum_probs=173.3
Q ss_pred HHHHHHHHHhhhcchhhhhhhccCceEEEEEeccCCCCCchhHHHHHHHHhhcCCEEEecccccCcchhHHHHHHHHHHH
Q 018257 104 KRRDSVRATWMPQGEKRKMLEEAKGIIIRFVIGHSATSGGILDKAIDAEEKMHGDFLRLEHIEGYLELSAKTKTYFATAV 183 (359)
Q Consensus 104 ~rR~aIR~TW~~~~~~l~~l~~~~~i~v~FvlG~s~~~~~~~~~~I~~E~~~~~Dil~~df~DsY~nLt~Kt~~~~~wa~ 183 (359)
+||++||+|||+... ....+++++||+|.+.+.+..++..|.+|+++|+||||+||.|+|.|||+||+++|+|+.
T Consensus 1 ~rR~~IR~TW~~~~~-----~~~~~~~~~FvvG~~~~~~~~~~~~l~~E~~~y~Dil~~d~~D~y~nlt~K~~~~~~w~~ 75 (195)
T PF01762_consen 1 ERRQAIRETWGNQRN-----FKGVRVKVVFVVGESPNSDSDLQEALQEEAEKYGDILQGDFVDSYRNLTLKTLAGLKWAS 75 (195)
T ss_pred ChHHHHHHHHhcccc-----cCCCcEEEEEEEecCCCCcHHHHHHhhhhhhhcCceEeeecccccchhhHHHHHHHHHHH
Confidence 589999999999864 235789999999999855678889999999999999999999999999999999999999
Q ss_pred h-cCCceEEEEeccceeeeHHHHHHHHhhc--CC-CCCeeEEecccCcccccCCCccccCccccccCCCCccccccCCCe
Q 018257 184 S-MWDAEFYIKVDDDVHVNLATLGMTLAAH--RT-KPRVYVGCMKSGPVLARKGVKYYEPEYWKFGEIGNKYFRHATGQL 259 (359)
Q Consensus 184 ~-~~~a~fvlKvDDDvfVn~~~L~~~L~~~--~~-~~~ly~G~~~~~pv~r~~~~K~~~p~~~~f~~p~~~Yp~y~~G~g 259 (359)
+ |++++|++|+|||+|||+++|.++|... .. ...+|.|++..+++.|++.+|||+|+..| |...|||||+|+|
T Consensus 76 ~~c~~~~~v~k~DDD~~vn~~~l~~~L~~~~~~~~~~~~~g~~~~~~~~~r~~~~kw~v~~~~y---~~~~yP~y~~G~~ 152 (195)
T PF01762_consen 76 KHCPNAKYVLKVDDDVFVNPDRLVSFLKSLKQDPSKNSIYGGCIKNGPPIRDPSSKWYVSEEEY---PDDYYPPYCSGGG 152 (195)
T ss_pred hhCCchhheeecCcEEEEehHHhhhhhhhcccCccccccccccccCCccccccccCceeeeeec---ccccCCCcCCCCe
Confidence 8 8889999999999999999999999987 33 33455555667788899999999998888 7889999999999
Q ss_pred eeeCHHHHHHHHHhccccCCCCcchHHHHHHHhcCCCeEecCC
Q 018257 260 YALSKDLATYISINQHLLHKYANEDVSLGSWFIGLDVEHVDDR 302 (359)
Q Consensus 260 YvlS~dla~~i~~~~~~l~~~~~EDV~vG~~l~~l~v~~~~~~ 302 (359)
|+||+++|+.|+.++..++.+++|||++|+|+.++||+++|++
T Consensus 153 yvls~~~v~~i~~~~~~~~~~~~eDv~iGi~~~~~~i~~~~~~ 195 (195)
T PF01762_consen 153 YVLSSDVVKRIYKASSHTPFFPLEDVFIGILAEKLGIKPIHDP 195 (195)
T ss_pred EEecHHHHHHHHHHhhcCCCCCchHHHHHHHHHHCCCCccCCC
Confidence 9999999999999999999999999999999999999999874
No 6
>PTZ00210 UDP-GlcNAc-dependent glycosyltransferase; Provisional
Probab=100.00 E-value=1.5e-33 Score=274.77 Aligned_cols=194 Identities=19% Similarity=0.262 Sum_probs=162.0
Q ss_pred CCCCCCceeEEEEEeCCCCC--HHHHHHHHHHhhhcch-hhhhhhccCceEEEEEeccCCCCCchhHHHHHHHHhhcCCE
Q 018257 83 GSMLKRKYFMVIGINTAFSS--RKRRDSVRATWMPQGE-KRKMLEEAKGIIIRFVIGHSATSGGILDKAIDAEEKMHGDF 159 (359)
Q Consensus 83 ~~~~~~~~~lli~V~S~~~~--~~rR~aIR~TW~~~~~-~l~~l~~~~~i~v~FvlG~s~~~~~~~~~~I~~E~~~~~Di 159 (359)
....++..++++||.|..++ +.||++.|+||.+... +.+...-...+.++|++|..++.+-..+.+|.+|+++||||
T Consensus 73 ~~w~~~~~lv~~Gi~S~d~~~r~~rR~lqr~t~w~y~~va~~~n~ftg~~lv~y~l~~H~~~~~~~~~~L~eEA~~~~DI 152 (382)
T PTZ00210 73 AVWKAQRFLAVLGIPSVDNSERSRRRDLQRQTCWKYSGVATRSNNFSGSLLPLYLLAPHQSNSYLISHSLKEEAARTHDI 152 (382)
T ss_pred HHhccCCceEEEeccCCCchHHHHHHHHHHhhhhcchhhhhhccCCchhhhhhhhhccCCccchhhhHHHHHHHHHhCCE
Confidence 35678899999999999988 8999999999998764 22332224567799999999887779999999999999999
Q ss_pred EEecc------------------cccCcchhHHHHHHHHHHHh-cCCceEEEEeccceeeeHHHHHHHHhhcCCCCCeeE
Q 018257 160 LRLEH------------------IEGYLELSAKTKTYFATAVS-MWDAEFYIKVDDDVHVNLATLGMTLAAHRTKPRVYV 220 (359)
Q Consensus 160 l~~df------------------~DsY~nLt~Kt~~~~~wa~~-~~~a~fvlKvDDDvfVn~~~L~~~L~~~~~~~~ly~ 220 (359)
|++|| .|++.|+|+||+++|+|+.. ||+++|++|+|||+|||+++++++|+.. ++..+|+
T Consensus 153 Vilpf~d~~~tTnKkiG~~g~WG~e~e~~mT~KT~l~~~wA~~~cP~a~YImKgDDDvFVrVp~lL~~Lr~~-prr~LY~ 231 (382)
T PTZ00210 153 ITLPTNDVSPSTRKKIGENGNWGIEAEVAMSRKTYLWLRFALHMFPNVSYIVKGDDDIFIRVPKYLADLRVM-PRHGLYM 231 (382)
T ss_pred EEEecccCccccccccccCCcccchhhcchhHHHHHHHHHHHHhCCCCCeEEEcCCCeEeeHHHHHHHHhhC-CCCceEE
Confidence 99999 77788999999999999998 9999999999999999999999999765 5566999
Q ss_pred EecccC-cccccCCCccccCccccccCCCCccccccCCCeeeeCHHHHHHHHHhccc--c---------------CCCCc
Q 018257 221 GCMKSG-PVLARKGVKYYEPEYWKFGEIGNKYFRHATGQLYALSKDLATYISINQHL--L---------------HKYAN 282 (359)
Q Consensus 221 G~~~~~-pv~r~~~~K~~~p~~~~f~~p~~~Yp~y~~G~gYvlS~dla~~i~~~~~~--l---------------~~~~~ 282 (359)
|.+... .+.| +.+||||+|+||+||+|+|+.|+...+. + -.+.+
T Consensus 232 G~v~~~~~p~R------------------d~~PpY~~G~gYvLSrDVA~~Lvs~~pl~rL~~~pys~~~~~~y~~~~~~~ 293 (382)
T PTZ00210 232 GRYNYYNRIWR------------------RNQLTYVNGYCITLSRDTAQAIISYKPLERLVNMPFSMWDYFDFLDLGMFY 293 (382)
T ss_pred EeeCCCCcccc------------------CCCCCccccceeeccHHHHHHHHhhChHhHhhcCCCchHHHHHHHHhhcCc
Confidence 997531 1111 2379999999999999999999986442 2 23579
Q ss_pred chHHHHHHH-hcCC
Q 018257 283 EDVSLGSWF-IGLD 295 (359)
Q Consensus 283 EDV~vG~~l-~~l~ 295 (359)
||+.||.+| .+++
T Consensus 294 EDiMvG~vLr~~~k 307 (382)
T PTZ00210 294 EDVMVGMILREKVV 307 (382)
T ss_pred hHHHHHHHHHHhcC
Confidence 999999999 5554
No 7
>PF02434 Fringe: Fringe-like; InterPro: IPR003378 The Notch receptor is a large, cell surface transmembrane protein involved in a wide variety of developmental processes in higher organisms []. It becomes activated when its extracellular region binds to ligands located on adjacent cells. Much of this extracellular region is composed of EGF-like repeats, many of which can be O-fucosylated. A number of these O-fucosylated repeats can in turn be further modified by the action of a beta-1,3-N-acetylglucosaminyltransferase enzyme known as Fringe []. Fringe potentiates the activation of Notch by Delta ligands, while inhibiting activation by Serrate/Jagged ligands. This regulation of Notch signalling by Fringe is important in many processes []. Four distinct Fringe proteins have so far been studied in detail; Drosophila Fringe (Dfng) and its three mammalian homologues Lunatic Fringe (Lfng), Radical Fringe (Rfng) and Manic Fringe (Mfng). Dfng, Lfng and Rfng have all been shown to play important roles in developmental processes within their host, though the phenotype of mutants can vary between species e.g. Rfng mutants are retarded in wing development in chickens, but have no obvious phenotype in mice [, , ]. Mfng mutants have not, so far, been charcterised. Biochemical studies indicate that the Fringe proteins are fucose-specific transferases requiring manganese for activity and utilising UDP-N-acetylglucosamine as a donor substrate []. The three mammalian proteins show distinct variations in their catalytic efficiencies with different substrates. Dfng is a glucosaminyltransferase that controls the response of the Notch receptor to specific ligands which is localised to the Golgi apparatus [] (not secreted as previously thought). Modification of Notch occurs through glycosylation by Dfng. This entry consists of Fringe proteins and related glycosyltransferase enzymes including: Beta-1,3-glucosyltransferase, which glucosylates O-linked fucosylglycan on thrombospondin type 1 repeat domains []. Core 1 beta1,3-galactosyltransferase 1, generates the core T antigen, which is a precursor for many extended O-glycans in glycoproteins and plays a central role in many processes, such as angiogenesis, thrombopoiesis and kidney homeostasis development []. ; GO: 0016757 transferase activity, transferring glycosyl groups, 0016020 membrane; PDB: 2J0B_A 2J0A_A.
Probab=99.80 E-value=2.1e-19 Score=170.34 Aligned_cols=191 Identities=18% Similarity=0.196 Sum_probs=100.3
Q ss_pred eEEEEEeCCCCCHHHH-HHHHHHhhhcchhhhhhhccCceEEEE-EeccCCCCCchhHHHHHHHHhhcCCEEEecccccC
Q 018257 91 FMVIGINTAFSSRKRR-DSVRATWMPQGEKRKMLEEAKGIIIRF-VIGHSATSGGILDKAIDAEEKMHGDFLRLEHIEGY 168 (359)
Q Consensus 91 ~lli~V~S~~~~~~rR-~aIR~TW~~~~~~l~~l~~~~~i~v~F-vlG~s~~~~~~~~~~I~~E~~~~~Dil~~df~DsY 168 (359)
.++|+|+|++++.+.| .+|++||++.+.. ..| +.... +..|..+ ...+++.-+...++
T Consensus 7 dI~i~V~T~~k~h~tR~~~I~~TW~~~~~~-----------~~~ifsd~~-------d~~l~~~--~~~~l~~~~~~~~~ 66 (252)
T PF02434_consen 7 DIFIAVKTTKKFHKTRAPAIKQTWAKRCNK-----------QTFIFSDAE-------DPSLPTV--TGVHLVNPNCDAGH 66 (252)
T ss_dssp GEEEEEE--GGGTTTTHHHHHHTGGGGSGG-----------GEEEEESS---------HHHHHH--HGGGEEE-------
T ss_pred cEEEEEEeCHHHHHHHHHHHHHHHHhhcCC-----------ceEEecCcc-------ccccccc--cccccccCCCcchh
Confidence 6889999999877555 8999999999852 124 33222 2333333 23345555555555
Q ss_pred cchhHHHHHHHHHHHh-cCCceEEEEeccceeeeHHHHHHHHhhcCCCCCeeEEeccc-CcccccCCCccccCccccccC
Q 018257 169 LELSAKTKTYFATAVS-MWDAEFYIKVDDDVHVNLATLGMTLAAHRTKPRVYVGCMKS-GPVLARKGVKYYEPEYWKFGE 246 (359)
Q Consensus 169 ~nLt~Kt~~~~~wa~~-~~~a~fvlKvDDDvfVn~~~L~~~L~~~~~~~~ly~G~~~~-~pv~r~~~~K~~~p~~~~f~~ 246 (359)
...+++.++.+.+... .++++|++++|||+||++++|+.+|...++..++|+|+... .+...-.......+
T Consensus 67 ~~~~~~~~~~~~y~~~~~~~~~Wf~~~DDDtyv~~~~L~~~L~~~~~~~~~yiG~~~~~~~~~~~~~~~~~~~------- 139 (252)
T PF02434_consen 67 CRKTLSCKMAYEYDHFLNSDKDWFCFADDDTYVNVENLRRLLSKYDPSEPIYIGRPSGDRPIEIIHRFNPNKS------- 139 (252)
T ss_dssp ------HHHHHHHHHHHHHT-SEEEEEETTEEE-HHHHHHHHTTS-TTS--EEE-EE-----------------------
T ss_pred hHHHHHHHHHHHHHhhhcCCceEEEEEeCCceecHHHHHHHHhhCCCccCEEeeeeccCccceeecccccccc-------
Confidence 4445555555454333 46889999999999999999999999999999999999753 22211000000001
Q ss_pred CCCcccccc-CCCeeeeCHHHHHHHHHh---ccccCCC----CcchHHHHHHHhc-CCCeEecCCCcccCCC
Q 018257 247 IGNKYFRHA-TGQLYALSKDLATYISIN---QHLLHKY----ANEDVSLGSWFIG-LDVEHVDDRRLCCGTP 309 (359)
Q Consensus 247 p~~~Yp~y~-~G~gYvlS~dla~~i~~~---~~~l~~~----~~EDV~vG~~l~~-l~v~~~~~~~f~~~~~ 309 (359)
....| .|+ +|+||+||+.++++|... ....... ..||+.||.|+.. |||..++.+.|+.-.+
T Consensus 140 ~~~~~-~f~~GGaG~vlSr~~~~k~~~~~~~~~~~~~~~~~~~~dD~~lG~ci~~~lgv~lt~s~~fhs~~~ 210 (252)
T PF02434_consen 140 KDSGF-WFATGGAGYVLSRALLKKMSPWASGCKCPSTDEKIRLPDDMTLGYCIENLLGVPLTHSPLFHSHLE 210 (252)
T ss_dssp -------EE-GGG-EEEEHHHHHHHHHHHTT-TTS--TTTTTS-HHHHHHHHHHHTT---EEE-TT---SSS
T ss_pred CcCce-EeeCCCeeHHHhHHHHHHHhhhcccccccCCcCCCCCcccChhhhhHHhcCCcceeechhhcccCc
Confidence 01122 344 679999999999999542 1222222 3899999999988 9999999999977543
No 8
>KOG2246 consensus Galactosyltransferases [Carbohydrate transport and metabolism]
Probab=99.70 E-value=1.9e-16 Score=157.03 Aligned_cols=170 Identities=23% Similarity=0.309 Sum_probs=132.6
Q ss_pred CCCCceeEEEEEeCCCCCHHHH-HHHHHHhhhcchhhhhhhccCceEEEEEe---ccCCCCCchhHHHHHHHHhhcCCEE
Q 018257 85 MLKRKYFMVIGINTAFSSRKRR-DSVRATWMPQGEKRKMLEEAKGIIIRFVI---GHSATSGGILDKAIDAEEKMHGDFL 160 (359)
Q Consensus 85 ~~~~~~~lli~V~S~~~~~~rR-~aIR~TW~~~~~~l~~l~~~~~i~v~Fvl---G~s~~~~~~~~~~I~~E~~~~~Dil 160 (359)
...++..++++|.|++.+...| +++-+||+++++. ..|+- .+... .+. .|
T Consensus 86 ~l~r~~~v~cwv~t~~~~~~~~~~~v~~TW~~rc~~-----------~~f~s~~~s~~~~--------------~f~-~v 139 (364)
T KOG2246|consen 86 WLSRSGRVLCWVLTSPMRHVTRADAVKETWLKRCDK-----------GIFFSPTLSKDDS--------------RFP-TV 139 (364)
T ss_pred ccCCCceEEEEEEecCcCceeehhhhhcccccccCc-----------ceecCccCCCCCC--------------cCc-ee
Confidence 3467889999999998887665 7999999999862 33554 32221 122 34
Q ss_pred EecccccCcchhHHHHHHHHHHHh--cCCceEEEEeccceeeeHHHHHHHHhhcCCCCCeeEEecccCcccccCCCcccc
Q 018257 161 RLEHIEGYLELSAKTKTYFATAVS--MWDAEFYIKVDDDVHVNLATLGMTLAAHRTKPRVYVGCMKSGPVLARKGVKYYE 238 (359)
Q Consensus 161 ~~df~DsY~nLt~Kt~~~~~wa~~--~~~a~fvlKvDDDvfVn~~~L~~~L~~~~~~~~ly~G~~~~~pv~r~~~~K~~~ 238 (359)
..+..|+|+++..||...|+++.. -.+++|++|+|||+|+.++||..+|..+++.+++|+|+... -|.
T Consensus 140 ~~~~~~g~~~~~~ktr~~~~yv~~~~~~~~dWf~~aDDDTy~i~eNLr~~L~~yDp~~p~YiG~~~~----------~~~ 209 (364)
T KOG2246|consen 140 YYNLPDGYRSLWRKTRIAFKYVYDHILKDYDWFLKADDDTYFIMENLRYVLSKYDPEKPVYLGYRSK----------SYF 209 (364)
T ss_pred eccCCcchHHHHHHHHHHHHHHHHhccCCCCeEEeccCCeEEeHHHHHHHHhhcCCCCcEEeccccc----------ccc
Confidence 678999999999999999999985 47999999999999999999999999999999999999641 111
Q ss_pred CccccccCCCCccccccCCCeeeeCHHHHHHHHHhccc-----cCCCC--cchHHHHHHHhcCCCeEecC
Q 018257 239 PEYWKFGEIGNKYFRHATGQLYALSKDLATYISINQHL-----LHKYA--NEDVSLGSWFIGLDVEHVDD 301 (359)
Q Consensus 239 p~~~~f~~p~~~Yp~y~~G~gYvlS~dla~~i~~~~~~-----l~~~~--~EDV~vG~~l~~l~v~~~~~ 301 (359)
- +.|- .+|+||++|+++.+.+++.... ...++ .||+-||.||+.+||...|.
T Consensus 210 ~---------~~y~--~g~ag~~ls~aa~~~la~~l~~~~~~C~~~~~~~~eD~~i~~Cl~~~GV~~~d~ 268 (364)
T KOG2246|consen 210 Q---------NGYS--SGGAGYVLSFAALRRLAERLLNNEDKCPQRYPSYGEDRRIGRCLAEVGVPATDE 268 (364)
T ss_pred c---------cccc--cCCCCcceeHHHHHHHHHHHhcchhhcccccCCchhHHHHHHHHHHhCCCccCc
Confidence 1 1121 4789999999999998874321 22343 89999999999999987765
No 9
>PF13334 DUF4094: Domain of unknown function (DUF4094)
Probab=99.61 E-value=4.9e-16 Score=126.08 Aligned_cols=64 Identities=33% Similarity=0.509 Sum_probs=55.4
Q ss_pred CCCCCccccccccccc---------ccCCchhhhhhccccchHHHHHHhHHHHHHHHHHhHHHHhhhhhhhhhc
Q 018257 1 MWMMPESKGVARISKT---------EEIENPELKAVKHESNNNTEKLAMVEQAIQSQDKRLDGLKTKITAVRAE 65 (359)
Q Consensus 1 ~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~el~~~~~~ 65 (359)
||++||++++.+.+.. .++|+.++ ..+.+++|+|+||++||++||+|||+||+||||||+||++
T Consensus 23 ~W~~pe~~~~~~~~~~~~~~~l~l~s~~c~~k~-~~~~~~~di~~eV~kTh~aIq~LdKtIS~LEMELAaARa~ 95 (95)
T PF13334_consen 23 MWTVPESKEISRRSSQDAEERLQLVSEDCDPKK-LKESDQRDIMGEVSKTHEAIQSLDKTISSLEMELAAARAE 95 (95)
T ss_pred cccCCccccchhhhccccccccccccccccccc-cccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 7999999988865442 38999876 3357999999999999999999999999999999999973
No 10
>PLN03153 hypothetical protein; Provisional
Probab=99.20 E-value=2.1e-10 Score=116.98 Aligned_cols=183 Identities=17% Similarity=0.119 Sum_probs=113.5
Q ss_pred eeEEEEEeCCCCCH-HHHHHHHHHhhhcchhhhhhhccCceEEEEEeccCCCCCchhHHHHHHHHhhcCCEEE-ec---c
Q 018257 90 YFMVIGINTAFSSR-KRRDSVRATWMPQGEKRKMLEEAKGIIIRFVIGHSATSGGILDKAIDAEEKMHGDFLR-LE---H 164 (359)
Q Consensus 90 ~~lli~V~S~~~~~-~rR~aIR~TW~~~~~~l~~l~~~~~i~v~FvlG~s~~~~~~~~~~I~~E~~~~~Dil~-~d---f 164 (359)
-.++++|.++.+.. +|+..|+.+|.+..- . ..+|+.....+. ..+ ..---|.. .| |
T Consensus 122 ~hIvF~I~~s~~~w~~R~~yik~wW~p~~~--------r--g~v~ld~~~~~~--~~~-------~~~P~i~is~d~s~f 182 (537)
T PLN03153 122 NHIMFGIAGSSQLWKRRKELVRLWWRPNQM--------R--GHVWLEEQVSPE--EGD-------DSLPPIMVSEDTSRF 182 (537)
T ss_pred ccEEEEEEEchhhhhhhhhhhhhhcCcccc--------e--eEEEecccCCCC--CCc-------CCCCCEEeCCCcccc
Confidence 36888999887776 556899999998631 1 144544332210 000 00000111 01 1
Q ss_pred c-ccCcchhHHHHH--HHHHHHh--cCCceEEEEeccceeeeHHHHHHHHhhcCCCCCeeEEecccCcccccCCCccccC
Q 018257 165 I-EGYLELSAKTKT--YFATAVS--MWDAEFYIKVDDDVHVNLATLGMTLAAHRTKPRVYVGCMKSGPVLARKGVKYYEP 239 (359)
Q Consensus 165 ~-DsY~nLt~Kt~~--~~~wa~~--~~~a~fvlKvDDDvfVn~~~L~~~L~~~~~~~~ly~G~~~~~pv~r~~~~K~~~p 239 (359)
. +...+......+ +...+.. .++++||+++|||+|+.+++|+..|...++++..|+|.....- .
T Consensus 183 ~y~~~~Gh~sa~rI~rmv~et~~~~~pd~kWfVf~DDDTyf~~~NLv~~Ls~YDptkp~YIGs~Se~~-----------~ 251 (537)
T PLN03153 183 RYTNPTGHPSGLRISRIVLESFRLGLPDVRWFVLGDDDTIFNADNLVAVLSKYDPSEMVYVGGPSESH-----------S 251 (537)
T ss_pred cccCCCCcHHHHHHHHHHHHHHHhhCCCCCEEEEecCCccccHHHHHHHHhhcCCCCCEEeccccccc-----------c
Confidence 0 111122222111 2333333 5899999999999999999999999999999999999864210 0
Q ss_pred ccccccCCCCccccccCCCeeeeCHHHHHHHHHhccc-c---CCCCcchHHHHHHHhcCCCeEecCCCcccC
Q 018257 240 EYWKFGEIGNKYFRHATGQLYALSKDLATYISINQHL-L---HKYANEDVSLGSWFIGLDVEHVDDRRLCCG 307 (359)
Q Consensus 240 ~~~~f~~p~~~Yp~y~~G~gYvlS~dla~~i~~~~~~-l---~~~~~EDV~vG~~l~~l~v~~~~~~~f~~~ 307 (359)
...+|+ |--.-+|+||+||+.+++.|...... . +...-+|.-||.|+..+||...+.++|+-.
T Consensus 252 qn~~f~-----~~fA~GGAG~~LSrPLae~L~~~~d~C~~rY~~~~~gD~rL~~CL~elGV~LT~~~gfhQ~ 318 (537)
T PLN03153 252 ANSYFS-----HNMAFGGGGIAISYPLAEALSRILDDCLDRYPKLYGSDDRLHACITELGVPLSREPGFHQW 318 (537)
T ss_pred cccccc-----cccccCCceEEEcHHHHHHHHHHhhhhhhhcccCCCcHHHHHHHHHHcCCCceecCCcccc
Confidence 000111 11114899999999999998875322 1 122458888999999999998888888653
No 11
>KOG3708 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.90 E-value=2.4e-05 Score=79.68 Aligned_cols=194 Identities=16% Similarity=0.177 Sum_probs=123.1
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhhhcchhhhhhhccCceEEEEEeccCCCCCchhHHHHHHHHhhcCCEEEecccccCcc
Q 018257 91 FMVIGINTAFSSRKRRDSVRATWMPQGEKRKMLEEAKGIIIRFVIGHSATSGGILDKAIDAEEKMHGDFLRLEHIEGYLE 170 (359)
Q Consensus 91 ~lli~V~S~~~~~~rR~aIR~TW~~~~~~l~~l~~~~~i~v~FvlG~s~~~~~~~~~~I~~E~~~~~Dil~~df~DsY~n 170 (359)
.|+++|+|. ..---+|-+|=+..-. ++.|+++.+... .|.-++..+-.|..
T Consensus 27 rl~~aVmte---~tlA~a~NrT~ahhvp-----------rv~~F~~~~~i~---------------~~~a~~~~vs~~d~ 77 (681)
T KOG3708|consen 27 RLMAAVMTE---STLALAINRTLAHHVP-----------RVHLFADSSRID---------------NDLAQLTNVSPYDL 77 (681)
T ss_pred HHHHHHHHH---HHHHHHHHHHHHhhcc-----------eeEEeecccccc---------------ccHhhccccCcccc
Confidence 566778872 2556678788776642 477888876532 12223333333333
Q ss_pred hhHHHH-HHHHHHHh--cCCceEEEEeccceeeeHHHHHHHHhhcCCCCCeeEEecccCcccccCCCccccCccccccCC
Q 018257 171 LSAKTK-TYFATAVS--MWDAEFYIKVDDDVHVNLATLGMTLAAHRTKPRVYVGCMKSGPVLARKGVKYYEPEYWKFGEI 247 (359)
Q Consensus 171 Lt~Kt~-~~~~wa~~--~~~a~fvlKvDDDvfVn~~~L~~~L~~~~~~~~ly~G~~~~~pv~r~~~~K~~~p~~~~f~~p 247 (359)
-..|+. +.++++.+ .-+++|++-+-|++|||...|+.++....-+.++|+|.-.. -| .
T Consensus 78 r~~~~~s~vl~~l~~~~~~~YDwFll~~D~tYv~a~~L~~l~~hmsin~dlymGEe~~------------------~g-s 138 (681)
T KOG3708|consen 78 RGQKTHSMVLGLLFNMVHNNYDWFLLAKDSTYVNAFVLLRLIDHMSINEDLYMGEEAE------------------DG-S 138 (681)
T ss_pred CccccHHHHHHHHHHhhccccceEEEecCcceecHHHHHHHHhhcccccccccchhhh------------------Cc-c
Confidence 344544 34566655 46999999999999999999999999888888999983210 00 1
Q ss_pred CCcccccc-CCCeeeeCHHHHHHHHHhccccC---CCCcchHHHHHHHh---cCCCeEecC--CCcccC--CCC----Cc
Q 018257 248 GNKYFRHA-TGQLYALSKDLATYISINQHLLH---KYANEDVSLGSWFI---GLDVEHVDD--RRLCCG--TPP----DC 312 (359)
Q Consensus 248 ~~~Yp~y~-~G~gYvlS~dla~~i~~~~~~l~---~~~~EDV~vG~~l~---~l~v~~~~~--~~f~~~--~~~----~~ 312 (359)
+ . | .|.||+||+.++..+-.|-.--. .-.-.|+.+|.|++ +++.++.|. ++|... +|. ..
T Consensus 139 ~-r----C~l~~G~LLS~s~l~~lrnnle~C~~~~lsad~d~~lgrCi~~At~v~C~~~hQGvrq~s~~~dspgr~~~~~ 213 (681)
T KOG3708|consen 139 G-R----CRLDTGMLLSQSLLHALRNNLEGCRNDILSADPDEWLGRCIQDATGVGCKPLHQGVRQYSEREDSPGRHDSIP 213 (681)
T ss_pred C-c----cccccceeecHHHHHHHHhhHHHhhcccccCCcHHHHHHHHHHhhcCCccchhhhHHhhhHhhcCCCccccch
Confidence 1 1 5 47999999999999987643222 22467899999994 555555543 223221 111 12
Q ss_pred ccccccCCcccccccccccccchhhHHHHHhhcc-CccchHHh
Q 018257 313 EWKAQLGKTCVATFDWRCSGICKSVERIKEVHEL-CGEGEDTL 354 (359)
Q Consensus 313 ~~k~~~~~~C~~~f~~~~~g~~~~~~~~~~vH~~-~~~~~~~~ 354 (359)
+|+.. ..+++-.+||.+ +|.+|+.+
T Consensus 214 e~~~s-----------------~aFr~A~tv~pv~~p~d~yrL 239 (681)
T KOG3708|consen 214 EWEGS-----------------PAFRSALTVHPVLSPADMYRL 239 (681)
T ss_pred hhcCC-----------------hHHhhhhccCccCCHHHHHHH
Confidence 34321 127788888887 67777765
No 12
>PF01755 Glyco_transf_25: Glycosyltransferase family 25 (LPS biosynthesis protein); InterPro: IPR002654 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 25 GT25 from CAZY comprises enzymes with only one known activity; as a lipopolysaccharide biosynthesis protein. These enzymes catalyse the transfer of various sugars onto the growing lipopolysaccharide chain during its biosynthesis [].; GO: 0009103 lipopolysaccharide biosynthetic process
Probab=95.51 E-value=0.33 Score=43.66 Aligned_cols=93 Identities=17% Similarity=0.152 Sum_probs=50.6
Q ss_pred EEEeCCCCCHHHHHHHHHHhhhcchhhhhhhccCceEEEEEeccCCCCCchhHHHHHHHHhhcCCEEEec-----ccccC
Q 018257 94 IGINTAFSSRKRRDSVRATWMPQGEKRKMLEEAKGIIIRFVIGHSATSGGILDKAIDAEEKMHGDFLRLE-----HIEGY 168 (359)
Q Consensus 94 i~V~S~~~~~~rR~aIR~TW~~~~~~l~~l~~~~~i~v~FvlG~s~~~~~~~~~~I~~E~~~~~Dil~~d-----f~DsY 168 (359)
|.|.|-+.+.+||+.|.+..... ++.+.|+-|..... +.. .+....+..-.... ..-+-
T Consensus 4 i~vInL~~~~~Rr~~~~~~~~~~-----------~~~~e~~~Avdg~~---l~~--~~~~~~~~~~~~~~~~~~~lt~gE 67 (200)
T PF01755_consen 4 IYVINLDRSTERRERIQQQLAKL-----------GINFEFFDAVDGRD---LSE--DELFRRYDPELFKKRYGRPLTPGE 67 (200)
T ss_pred EEEEECCCCHHHHHHHHHHHHHc-----------CCceEEEEeecccc---cch--HHHHHHhhhhhhhccccccCCcce
Confidence 34567888899999997766644 34566776655421 111 11111121111110 01111
Q ss_pred cchhHHHHHHHHHHHhcCCceEEEEeccceeeeHH
Q 018257 169 LELSAKTKTYFATAVSMWDAEFYIKVDDDVHVNLA 203 (359)
Q Consensus 169 ~nLt~Kt~~~~~wa~~~~~a~fvlKvDDDvfVn~~ 203 (359)
-.=.+-.+..++-+++ .+.++.+-..||+.++.+
T Consensus 68 iGC~lSH~~~w~~~v~-~~~~~~lIlEDDv~~~~~ 101 (200)
T PF01755_consen 68 IGCALSHIKAWQRIVD-SGLEYALILEDDVIFDPD 101 (200)
T ss_pred EeehhhHHHHHHHHHH-cCCCeEEEEecccccccc
Confidence 1113445556666665 367899999999999965
No 13
>PF13641 Glyco_tranf_2_3: Glycosyltransferase like family 2; PDB: 4FIY_B 4FIX_A.
Probab=94.54 E-value=1 Score=40.58 Aligned_cols=157 Identities=12% Similarity=-0.017 Sum_probs=72.3
Q ss_pred ceEEEEEeccCCCCCchhHHHHHHHHhhcCCE--EEecccccCcch--hHHHHHHHHHHHhcCCceEEEEeccceeeeHH
Q 018257 128 GIIIRFVIGHSATSGGILDKAIDAEEKMHGDF--LRLEHIEGYLEL--SAKTKTYFATAVSMWDAEFYIKVDDDVHVNLA 203 (359)
Q Consensus 128 ~i~v~FvlG~s~~~~~~~~~~I~~E~~~~~Di--l~~df~DsY~nL--t~Kt~~~~~wa~~~~~a~fvlKvDDDvfVn~~ 203 (359)
.+.++++...+.. .....+.+-.+.+... -.+.. ..|. +.|.. .+.++.+..+.+|++.+|||+.+..+
T Consensus 30 ~~~v~vvd~~~~~---~~~~~~~~~~~~~~~~~v~vi~~---~~~~g~~~k~~-a~n~~~~~~~~d~i~~lD~D~~~~p~ 102 (228)
T PF13641_consen 30 RLEVVVVDDGSDD---ETAEILRALAARYPRVRVRVIRR---PRNPGPGGKAR-ALNEALAAARGDYILFLDDDTVLDPD 102 (228)
T ss_dssp TEEEEEEEE-SSS----GCTTHHHHHHTTGG-GEEEEE-------HHHHHHHH-HHHHHHHH---SEEEEE-SSEEE-CH
T ss_pred CeEEEEEECCCCh---HHHHHHHHHHHHcCCCceEEeec---CCCCCcchHHH-HHHHHHHhcCCCEEEEECCCcEECHH
Confidence 3566666644432 2223344444455542 22221 1222 23433 34555554579999999999999999
Q ss_pred HHHHHHhhc-CCCCCeeEEecccCc---cccc----CCCccccCccccccCCCCccccccCCCeeeeCHHHHHHHHHhcc
Q 018257 204 TLGMTLAAH-RTKPRVYVGCMKSGP---VLAR----KGVKYYEPEYWKFGEIGNKYFRHATGQLYALSKDLATYISINQH 275 (359)
Q Consensus 204 ~L~~~L~~~-~~~~~ly~G~~~~~p---v~r~----~~~K~~~p~~~~f~~p~~~Yp~y~~G~gYvlS~dla~~i~~~~~ 275 (359)
.|..++... .+.-.+..|.+...+ .... ....|+... ..+...... .++.|++.++.++++..+-.-..
T Consensus 103 ~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~--~~~~G~~~~~rr~~~~~~g~fd~ 179 (228)
T PF13641_consen 103 WLERLLAAFADPGVGAVGGPVFPDNDRNWLTRLQDLFFARWHLRF-RSGRRALGV--AFLSGSGMLFRRSALEEVGGFDP 179 (228)
T ss_dssp HHHHHHHHHHBSS--EEEEEEEETTCCCEEEE-TT--S-EETTTS--TT-B------S-B--TEEEEEHHHHHHH-S--S
T ss_pred HHHHHHHHHHhCCCCeEeeeEeecCCCCHHHHHHHHHHhhhhhhh-hhhhcccce--eeccCcEEEEEHHHHHHhCCCCC
Confidence 998888776 333333333332111 1000 000111110 001111111 34679999999999998853222
Q ss_pred ccCCCCcchHHHHHHHhcCCCe
Q 018257 276 LLHKYANEDVSLGSWFIGLDVE 297 (359)
Q Consensus 276 ~l~~~~~EDV~vG~~l~~l~v~ 297 (359)
....||..++.-+...|..
T Consensus 180 ---~~~~eD~~l~~r~~~~G~~ 198 (228)
T PF13641_consen 180 ---FILGEDFDLCLRLRAAGWR 198 (228)
T ss_dssp ---SSSSHHHHHHHHHHHTT--
T ss_pred ---CCcccHHHHHHHHHHCCCc
Confidence 3446999999998766644
No 14
>TIGR03472 HpnI hopanoid biosynthesis associated glycosyl transferase protein HpnI. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The member of this clade from Acidithiobacillus ferrooxidans ATCC 23270 (AFE_0974) is found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. Similarly, in Ralstonia eutropha JMP134 (Reut_B4902) this gene is adjacent to HpnAB, IspH and HpnH (TIGR03470), although SHC itself is elsewhere in the genome. Notably, this gene (here named HpnI) and three others form a conserved set (HpnIJKL) which occur in a subset of all genomes containing the SHC enzyme. This relationship was discerned using the method of partial phylogenetic profiling. This group includes Zymomonas mobilis, the organism where the initial hopano
Probab=94.20 E-value=1.5 Score=43.63 Aligned_cols=161 Identities=16% Similarity=0.133 Sum_probs=84.7
Q ss_pred ceEEEEEeccCCCCCchhHHHHHHHHhhcCC--EEEecccccCcchhHHHHHHHHHHHhcCCceEEEEeccceeeeHHHH
Q 018257 128 GIIIRFVIGHSATSGGILDKAIDAEEKMHGD--FLRLEHIEGYLELSAKTKTYFATAVSMWDAEFYIKVDDDVHVNLATL 205 (359)
Q Consensus 128 ~i~v~FvlG~s~~~~~~~~~~I~~E~~~~~D--il~~df~DsY~nLt~Kt~~~~~wa~~~~~a~fvlKvDDDvfVn~~~L 205 (359)
.+.++|+...+.+ .....+++=.+.|.+ +..+. ...-.....|.-...+ +.+..+.+|++.+|+|+.+..+.|
T Consensus 70 ~~EIivvdd~s~D---~t~~iv~~~~~~~p~~~i~~v~-~~~~~G~~~K~~~l~~-~~~~a~ge~i~~~DaD~~~~p~~L 144 (373)
T TIGR03472 70 GFQMLFGVQDPDD---PALAVVRRLRADFPDADIDLVI-DARRHGPNRKVSNLIN-MLPHARHDILVIADSDISVGPDYL 144 (373)
T ss_pred CeEEEEEeCCCCC---cHHHHHHHHHHhCCCCceEEEE-CCCCCCCChHHHHHHH-HHHhccCCEEEEECCCCCcChhHH
Confidence 4677777765542 222333333355665 32221 1111222346555443 445568999999999999999999
Q ss_pred HHHHhhcCCCCCe-eEEec-ccCcc--cccC-----CCccccCccccccCCCCccccccCCCeeeeCHHHHHHHHHhccc
Q 018257 206 GMTLAAHRTKPRV-YVGCM-KSGPV--LARK-----GVKYYEPEYWKFGEIGNKYFRHATGQLYALSKDLATYISINQHL 276 (359)
Q Consensus 206 ~~~L~~~~~~~~l-y~G~~-~~~pv--~r~~-----~~K~~~p~~~~f~~p~~~Yp~y~~G~gYvlS~dla~~i~~~~~~ 276 (359)
...+.... .+++ .+++. ...+. .... ..-++.|.... .... .-+.+|.|+.+++.+++...+---..
T Consensus 145 ~~lv~~~~-~~~v~~V~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~-~~~~~~~G~~~a~RR~~l~~iGGf~~- 220 (373)
T TIGR03472 145 RQVVAPLA-DPDVGLVTCLYRGRPVPGFWSRLGAMGINHNFLPSVMV-ARAL-GRARFCFGATMALRRATLEAIGGLAA- 220 (373)
T ss_pred HHHHHHhc-CCCcceEeccccCCCCCCHHHHHHHHHhhhhhhHHHHH-HHhc-cCCccccChhhheeHHHHHHcCChHH-
Confidence 88887763 2222 22222 11110 0000 00111221000 0000 11345889999999999988753222
Q ss_pred cCCCCcchHHHHHHHhcCCCe
Q 018257 277 LHKYANEDVSLGSWFIGLDVE 297 (359)
Q Consensus 277 l~~~~~EDV~vG~~l~~l~v~ 297 (359)
+.....||+.+|.-+...|.+
T Consensus 221 ~~~~~~ED~~l~~~i~~~G~~ 241 (373)
T TIGR03472 221 LAHHLADDYWLGELVRALGLR 241 (373)
T ss_pred hcccchHHHHHHHHHHHcCCe
Confidence 222336999999999766543
No 15
>TIGR03469 HonB hopene-associated glycosyltransferase HpnB. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The genes of this family are often found in the same genetic locus with squalene-hopene cyclase genes, and are never associated with genes for the metabolism of phytoene. Indeed, the members of this family appear to never be found in a genome lacking squalene-hopene cyclase (SHC), although not all genomes encoding SHC have this glycosyl transferase. In the organism Zymomonas mobilis the linkage of this gene to hopanoid biosynthesis has been noted and the gene named HpnB. Hopanoids are known to feature polar glycosyl head groups in many organisms.
Probab=93.59 E-value=3.4 Score=41.36 Aligned_cols=160 Identities=15% Similarity=0.078 Sum_probs=82.3
Q ss_pred ceEEEEEeccCCCCCchhHHHHHHHHhhcC---CEEEecccccCcchhHHHH---HHHHHHHh-cCCceEEEEeccceee
Q 018257 128 GIIIRFVIGHSATSGGILDKAIDAEEKMHG---DFLRLEHIEGYLELSAKTK---TYFATAVS-MWDAEFYIKVDDDVHV 200 (359)
Q Consensus 128 ~i~v~FvlG~s~~~~~~~~~~I~~E~~~~~---Dil~~df~DsY~nLt~Kt~---~~~~wa~~-~~~a~fvlKvDDDvfV 200 (359)
...+++|-..|.+ ++ ...+++-.+.+. .+..+...+.-.+-..|.. .+++.+.. +.+.+|++.+|+|+.+
T Consensus 70 ~~eIIVVDd~StD--~T-~~i~~~~~~~~~~~~~i~vi~~~~~~~g~~Gk~~A~n~g~~~A~~~~~~gd~llflDaD~~~ 146 (384)
T TIGR03469 70 KLHVILVDDHSTD--GT-ADIARAAARAYGRGDRLTVVSGQPLPPGWSGKLWAVSQGIAAARTLAPPADYLLLTDADIAH 146 (384)
T ss_pred ceEEEEEeCCCCC--cH-HHHHHHHHHhcCCCCcEEEecCCCCCCCCcchHHHHHHHHHHHhccCCCCCEEEEECCCCCC
Confidence 3667777776653 22 222222223343 3444432222222234532 34555543 3458999999999999
Q ss_pred eHHHHHHHHhhcCCCC-CeeEEecccCcccccCCCcccc-----------CccccccCCCCccccccCCCeeeeCHHHHH
Q 018257 201 NLATLGMTLAAHRTKP-RVYVGCMKSGPVLARKGVKYYE-----------PEYWKFGEIGNKYFRHATGQLYALSKDLAT 268 (359)
Q Consensus 201 n~~~L~~~L~~~~~~~-~ly~G~~~~~pv~r~~~~K~~~-----------p~~~~f~~p~~~Yp~y~~G~gYvlS~dla~ 268 (359)
..+.|.+.++.....+ .+..|...... .....+... |-.+. .++ ......+.|++.++++++.+
T Consensus 147 ~p~~l~~lv~~~~~~~~~~vs~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~G~~~lirr~~~~ 222 (384)
T TIGR03469 147 GPDNLARLVARARAEGLDLVSLMVRLRC--ESFWEKLLIPAFVFFFQKLYPFRWV-NDP-RRRTAAAAGGCILIRREALE 222 (384)
T ss_pred ChhHHHHHHHHHHhCCCCEEEecccccC--CCHHHHHHHHHHHHHHHHhcchhhh-cCC-CccceeecceEEEEEHHHHH
Confidence 9999888887654322 23222221100 000000000 10010 001 11234468999999999998
Q ss_pred HHHHhccccCCCCcchHHHHHHHhcCC
Q 018257 269 YISINQHLLHKYANEDVSLGSWFIGLD 295 (359)
Q Consensus 269 ~i~~~~~~l~~~~~EDV~vG~~l~~l~ 295 (359)
.+---... .....||+.++.-+...|
T Consensus 223 ~vGGf~~~-~~~~~ED~~L~~r~~~~G 248 (384)
T TIGR03469 223 RIGGIAAI-RGALIDDCTLAAAVKRSG 248 (384)
T ss_pred HcCCHHHH-hhCcccHHHHHHHHHHcC
Confidence 87332221 122479999999887654
No 16
>PF13506 Glyco_transf_21: Glycosyl transferase family 21
Probab=93.12 E-value=0.16 Score=45.54 Aligned_cols=122 Identities=16% Similarity=0.081 Sum_probs=73.3
Q ss_pred HHHHHHHHHHHhcCCceEEEEeccceeeeHHHHHHHHhhcCC-CCCeeEEecccCcccccCCC---c---cccCcccccc
Q 018257 173 AKTKTYFATAVSMWDAEFYIKVDDDVHVNLATLGMTLAAHRT-KPRVYVGCMKSGPVLARKGV---K---YYEPEYWKFG 245 (359)
Q Consensus 173 ~Kt~~~~~wa~~~~~a~fvlKvDDDvfVn~~~L~~~L~~~~~-~~~ly~G~~~~~pv~r~~~~---K---~~~p~~~~f~ 245 (359)
.|+-.+........+.++++-.|+|+.|+.+.|.+.+..... +-.+-.|.....+. +.-.+ . ...+.-+.
T Consensus 17 ~Kv~nL~~~~~~~a~~d~~~~~DsDi~v~p~~L~~lv~~l~~p~vglVt~~~~~~~~-~~~~~~l~~~~~~~~~~~~~-- 93 (175)
T PF13506_consen 17 PKVNNLAQGLEAGAKYDYLVISDSDIRVPPDYLRELVAPLADPGVGLVTGLPRGVPA-RGFWSRLEAAFFNFLPGVLQ-- 93 (175)
T ss_pred hHHHHHHHHHHhhCCCCEEEEECCCeeECHHHHHHHHHHHhCCCCcEEEecccccCC-cCHHHHHHHHHHhHHHHHHH--
Confidence 566555554332368999999999999999999998887643 22222221111111 00000 0 01111111
Q ss_pred CCCCccccccCCCeeeeCHHHHHHHHHhccccCCCCcchHHHHHHHhcCCCeEec
Q 018257 246 EIGNKYFRHATGQLYALSKDLATYISINQHLLHKYANEDVSLGSWFIGLDVEHVD 300 (359)
Q Consensus 246 ~p~~~Yp~y~~G~gYvlS~dla~~i~~~~~~l~~~~~EDV~vG~~l~~l~v~~~~ 300 (359)
.-...+++.|+.+++.++++..+-- ...+..+--||..+|..+...|.+.+-
T Consensus 94 --a~~~~~~~~G~~m~~rr~~L~~~GG-~~~l~~~ladD~~l~~~~~~~G~~v~~ 145 (175)
T PF13506_consen 94 --ALGGAPFAWGGSMAFRREALEEIGG-FEALADYLADDYALGRRLRARGYRVVL 145 (175)
T ss_pred --HhcCCCceecceeeeEHHHHHHccc-HHHHhhhhhHHHHHHHHHHHCCCeEEE
Confidence 0123567999999999999987632 122333568999999999877776543
No 17
>cd04192 GT_2_like_e Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=92.75 E-value=3.6 Score=36.56 Aligned_cols=166 Identities=16% Similarity=0.022 Sum_probs=83.4
Q ss_pred eEEEEEeccCCCCCchhHHHHH-HHHhhcCCEEEecccccCcchhHHHHHHHHHHHhcCCceEEEEeccceeeeHHHHHH
Q 018257 129 IIIRFVIGHSATSGGILDKAID-AEEKMHGDFLRLEHIEGYLELSAKTKTYFATAVSMWDAEFYIKVDDDVHVNLATLGM 207 (359)
Q Consensus 129 i~v~FvlG~s~~~~~~~~~~I~-~E~~~~~Dil~~df~DsY~nLt~Kt~~~~~wa~~~~~a~fvlKvDDDvfVn~~~L~~ 207 (359)
+.++.|-+.+.. .....+. .....+..+..+.... -.|. -|. ..+.++.+....+|++.+|+|..+..+.|..
T Consensus 29 ~eiivvdd~s~d---~t~~~~~~~~~~~~~~v~~~~~~~-~~~~-g~~-~a~n~g~~~~~~d~i~~~D~D~~~~~~~l~~ 102 (229)
T cd04192 29 FEVILVDDHSTD---GTVQILEFAAAKPNFQLKILNNSR-VSIS-GKK-NALTTAIKAAKGDWIVTTDADCVVPSNWLLT 102 (229)
T ss_pred eEEEEEcCCCCc---ChHHHHHHHHhCCCcceEEeeccC-cccc-hhH-HHHHHHHHHhcCCEEEEECCCcccCHHHHHH
Confidence 567767665542 2233343 2222233455555443 2232 222 2345555556789999999999999988888
Q ss_pred HHhhcCC-CCCeeEEecccCcc---ccc-CCCccccCccccccCCCCccccccCCCeeeeCHHHHHHHHHhccccCCCCc
Q 018257 208 TLAAHRT-KPRVYVGCMKSGPV---LAR-KGVKYYEPEYWKFGEIGNKYFRHATGQLYALSKDLATYISINQHLLHKYAN 282 (359)
Q Consensus 208 ~L~~~~~-~~~ly~G~~~~~pv---~r~-~~~K~~~p~~~~f~~p~~~Yp~y~~G~gYvlS~dla~~i~~~~~~l~~~~~ 282 (359)
++..... ...++.|.....+. ... ..-.+........+.....++..+.|+++++++++...+---... .....
T Consensus 103 l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~rr~~~~~~ggf~~~-~~~~~ 181 (229)
T cd04192 103 FVAFIQKEQIGLVAGPVIYFKGKSLLAKFQRLDWLSLLGLIAGSFGLGKPFMCNGANMAYRKEAFFEVGGFEGN-DHIAS 181 (229)
T ss_pred HHHHhhcCCCcEEeeeeeecCCccHHHHHHHHHHHHHHHHHhhHHHhcCccccccceEEEEHHHHHHhcCCccc-ccccc
Confidence 8875532 23344454321100 000 000000000000000122355567899999999999887432222 22346
Q ss_pred chHHHHHHH--hcC-CCeEecC
Q 018257 283 EDVSLGSWF--IGL-DVEHVDD 301 (359)
Q Consensus 283 EDV~vG~~l--~~l-~v~~~~~ 301 (359)
||..++.-+ .+. .+..+.+
T Consensus 182 eD~~~~~~~~~~g~~~~~~~~~ 203 (229)
T cd04192 182 GDDELLLAKVASKYPKVAYLKN 203 (229)
T ss_pred CCHHHHHHHHHhCCCCEEEeeC
Confidence 777666544 344 4444433
No 18
>cd02525 Succinoglycan_BP_ExoA ExoA is involved in the biosynthesis of succinoglycan. Succinoglycan Biosynthesis Protein ExoA catalyzes the formation of a beta-1,3 linkage of the second sugar (glucose) of the succinoglycan with the galactose on the lipid carrie. Succinoglycan is an acidic exopolysaccharide that is important for invasion of the nodules. Succinoglycan is a high-molecular-weight polymer composed of repeating octasaccharide units. These units are synthesized on membrane-bound isoprenoid lipid carriers, beginning with galactose followed by seven glucose molecules, and modified by the addition of acetate, succinate, and pyruvate. ExoA is a membrane protein with a transmembrance domain at c-terminus.
Probab=92.06 E-value=8.8 Score=34.53 Aligned_cols=160 Identities=12% Similarity=-0.040 Sum_probs=80.1
Q ss_pred CceEEEEEeccCCCCCchhHHHHHHHHhhcCCEEEecccccCcchhHHHHHHHHHHHhcCCceEEEEeccceeeeHHHHH
Q 018257 127 KGIIIRFVIGHSATSGGILDKAIDAEEKMHGDFLRLEHIEGYLELSAKTKTYFATAVSMWDAEFYIKVDDDVHVNLATLG 206 (359)
Q Consensus 127 ~~i~v~FvlG~s~~~~~~~~~~I~~E~~~~~Dil~~df~DsY~nLt~Kt~~~~~wa~~~~~a~fvlKvDDDvfVn~~~L~ 206 (359)
..+.++.+-+.+.+ .....+....+.+..+....-. +.. +. .++..+.+..+.+|++.+|+|..+..+.|.
T Consensus 30 ~~~evivvd~~s~d---~~~~~~~~~~~~~~~v~~i~~~----~~~-~~-~a~N~g~~~a~~d~v~~lD~D~~~~~~~l~ 100 (249)
T cd02525 30 DLIEIIVVDGGSTD---GTREIVQEYAAKDPRIRLIDNP----KRI-QS-AGLNIGIRNSRGDIIIRVDAHAVYPKDYIL 100 (249)
T ss_pred CccEEEEEeCCCCc---cHHHHHHHHHhcCCeEEEEeCC----CCC-ch-HHHHHHHHHhCCCEEEEECCCccCCHHHHH
Confidence 34567766665542 3334444444443333333221 111 11 245555555588999999999999988888
Q ss_pred HHHhhcCCCC-CeeEEeccc---Ccccc---c-CCCccccCccccccCCCCccccccCCCeeeeCHHHHHHHHHhccccC
Q 018257 207 MTLAAHRTKP-RVYVGCMKS---GPVLA---R-KGVKYYEPEYWKFGEIGNKYFRHATGQLYALSKDLATYISINQHLLH 278 (359)
Q Consensus 207 ~~L~~~~~~~-~ly~G~~~~---~pv~r---~-~~~K~~~p~~~~f~~p~~~Yp~y~~G~gYvlS~dla~~i~~~~~~l~ 278 (359)
..+......+ .+..|.... ++... . ....+......+.. .....-.++.|++.++++++...+.--...
T Consensus 101 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-- 177 (249)
T cd02525 101 ELVEALKRTGADNVGGPMETIGESKFQKAIAVAQSSPLGSGGSAYRG-GAVKIGYVDTVHHGAYRREVFEKVGGFDES-- 177 (249)
T ss_pred HHHHHHhcCCCCEEecceecCCCChHHHHHHHHhhchhccCCccccc-cccccccccccccceEEHHHHHHhCCCCcc--
Confidence 8886553322 333444321 11100 0 00000000000000 000001145778888999998876432222
Q ss_pred CCCcchHHHHHHHhcCCCeE
Q 018257 279 KYANEDVSLGSWFIGLDVEH 298 (359)
Q Consensus 279 ~~~~EDV~vG~~l~~l~v~~ 298 (359)
....||..++.-+...|.+.
T Consensus 178 ~~~~eD~~l~~r~~~~G~~~ 197 (249)
T cd02525 178 LVRNEDAELNYRLRKAGYKI 197 (249)
T ss_pred cCccchhHHHHHHHHcCcEE
Confidence 23479999987776555443
No 19
>cd02510 pp-GalNAc-T pp-GalNAc-T initiates the formation of mucin-type O-linked glycans. UDP-GalNAc: polypeptide alpha-N-acetylgalactosaminyltransferases (pp-GalNAc-T) initiate the formation of mucin-type, O-linked glycans by catalyzing the transfer of alpha-N-acetylgalactosamine (GalNAc) from UDP-GalNAc to hydroxyl groups of Ser or Thr residues of core proteins to form the Tn antigen (GalNAc-a-1-O-Ser/Thr). These enzymes are type II membrane proteins with a GT-A type catalytic domain and a lectin domain located on the lumen side of the Golgi apparatus. In human, there are 15 isozymes of pp-GalNAc-Ts, representing the largest of all glycosyltransferase families. Each isozyme has unique but partially redundant substrate specificity for glycosylation sites on acceptor proteins.
Probab=91.79 E-value=12 Score=35.67 Aligned_cols=123 Identities=13% Similarity=0.087 Sum_probs=66.4
Q ss_pred HHHHHhcCCceEEEEeccceeeeHHHHHHHHhhcCCCCCeeEE-ecc--cC-cc-cccC------------CCccccCcc
Q 018257 179 FATAVSMWDAEFYIKVDDDVHVNLATLGMTLAAHRTKPRVYVG-CMK--SG-PV-LARK------------GVKYYEPEY 241 (359)
Q Consensus 179 ~~wa~~~~~a~fvlKvDDDvfVn~~~L~~~L~~~~~~~~ly~G-~~~--~~-pv-~r~~------------~~K~~~p~~ 241 (359)
...+.+....+|++..|+|+.+..+-|..+|......+...+| .+. .+ .. .... ...|.....
T Consensus 75 ~N~g~~~A~gd~i~fLD~D~~~~~~wL~~ll~~l~~~~~~~v~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (299)
T cd02510 75 RIAGARAATGDVLVFLDSHCEVNVGWLEPLLARIAENRKTVVCPIIDVIDADTFEYRGSSGDARGGFDWSLHFKWLPLPE 154 (299)
T ss_pred HHHHHHHccCCEEEEEeCCcccCccHHHHHHHHHHhCCCeEEEeeeccccCCCeeEecCCCceeEEecccceeccccCCH
Confidence 3444444578999999999999988887777665433333332 221 00 00 0000 001111100
Q ss_pred cc--ccC-CCCccccccCCCeeeeCHHHHHHHHHhccccCCCCcchHHHHHHH--hcCCCeEecC
Q 018257 242 WK--FGE-IGNKYFRHATGQLYALSKDLATYISINQHLLHKYANEDVSLGSWF--IGLDVEHVDD 301 (359)
Q Consensus 242 ~~--f~~-p~~~Yp~y~~G~gYvlS~dla~~i~~~~~~l~~~~~EDV~vG~~l--~~l~v~~~~~ 301 (359)
.. -.. +....-++++|+++++++++...+---...+..+..||+-+..=+ .|..+..+.+
T Consensus 155 ~~~~~~~~~~~~~~~~~~g~~~~irr~~~~~vGgfDe~~~~~~~ED~Dl~~R~~~~G~~i~~~p~ 219 (299)
T cd02510 155 EERRRESPTAPIRSPTMAGGLFAIDREWFLELGGYDEGMDIWGGENLELSFKVWQCGGSIEIVPC 219 (299)
T ss_pred HHhhhcCCCCCccCccccceeeEEEHHHHHHhCCCCCcccccCchhHHHHHHHHHcCCeEEEeec
Confidence 00 000 012234567899999999999888544444555567998775444 5555544443
No 20
>PF00535 Glycos_transf_2: Glycosyl transferase family 2; InterPro: IPR001173 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This domain is found in a diverse family of glycosyl transferases that transfer the sugar from UDP-glucose, UDP-N-acetyl-galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.; PDB: 2Z87_A 2Z86_B 2D7R_A 2D7I_A 3CKN_A 3CKQ_A 3CKJ_A 3CKV_A 3CKO_A 2FFU_A ....
Probab=91.46 E-value=4.3 Score=33.51 Aligned_cols=132 Identities=14% Similarity=0.098 Sum_probs=65.1
Q ss_pred ceEEEEEeccCCCCCchhHHHHHHHHhhcCCEEEecccccCcchhHHHHHHHHHHHhcCCceEEEEeccceeeeHHHHHH
Q 018257 128 GIIIRFVIGHSATSGGILDKAIDAEEKMHGDFLRLEHIEGYLELSAKTKTYFATAVSMWDAEFYIKVDDDVHVNLATLGM 207 (359)
Q Consensus 128 ~i~v~FvlG~s~~~~~~~~~~I~~E~~~~~Dil~~df~DsY~nLt~Kt~~~~~wa~~~~~a~fvlKvDDDvfVn~~~L~~ 207 (359)
.+.++++-..+. +.....+.+-.+....+..+...+.. .+..- +..+.+....+|++.+|||.++..+.|..
T Consensus 27 ~~eiivvdd~s~---d~~~~~~~~~~~~~~~i~~i~~~~n~-g~~~~----~n~~~~~a~~~~i~~ld~D~~~~~~~l~~ 98 (169)
T PF00535_consen 27 DFEIIVVDDGST---DETEEILEEYAESDPNIRYIRNPENL-GFSAA----RNRGIKHAKGEYILFLDDDDIISPDWLEE 98 (169)
T ss_dssp EEEEEEEECS-S---SSHHHHHHHHHCCSTTEEEEEHCCCS-HHHHH----HHHHHHH--SSEEEEEETTEEE-TTHHHH
T ss_pred CEEEEEeccccc---cccccccccccccccccccccccccc-ccccc----ccccccccceeEEEEeCCCceEcHHHHHH
Confidence 455666665553 23444444433324455555544433 22322 23333334556999999999999887777
Q ss_pred HHhhcCC-CCCeeEEecc--cCc--ccccCCC--ccccC---ccccccCCCCccccccCCCeeeeCHHHHHHH
Q 018257 208 TLAAHRT-KPRVYVGCMK--SGP--VLARKGV--KYYEP---EYWKFGEIGNKYFRHATGQLYALSKDLATYI 270 (359)
Q Consensus 208 ~L~~~~~-~~~ly~G~~~--~~p--v~r~~~~--K~~~p---~~~~f~~p~~~Yp~y~~G~gYvlS~dla~~i 270 (359)
++..... ...+.+|... ... ....... .+... .... ....-..++.|++.++++++.+.+
T Consensus 99 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~rr~~~~~~ 168 (169)
T PF00535_consen 99 LVEALEKNPPDVVIGSVIYIDDDNRYPDRRLRFSFWNRFERKIFNN---IRFWKISFFIGSCALFRRSVFEEI 168 (169)
T ss_dssp HHHHHHHCTTEEEEEEEEEEECTTETEECCCTSEEEECCHCHHHHT---THSTTSSEESSSCEEEEEHHHHHC
T ss_pred HHHHHHhCCCcEEEEEEEEecCCccccccccchhhhhhhhhHHHHh---hhcCCcccccccEEEEEHHHHHhh
Confidence 6666543 3445556542 111 1000000 01111 1111 112233467889999999988764
No 21
>cd02520 Glucosylceramide_synthase Glucosylceramide synthase catalyzes the first glycosylation step of glycosphingolipid synthesis. UDP-glucose:N-acylsphingosine D-glucosyltransferase (glucosylceramide synthase or ceramide glucosyltransferase) catalyzes the first glycosylation step of glycosphingolipid synthesis. Its product, glucosylceramide, serves as the core of more than 300 glycosphingolipids (GSL). GSLs are a group of membrane components that have the lipid portion embedded in the outer plasma membrane leaflet and the sugar chains extended to the outer environment. Several lines of evidence suggest the importance of GSLs in various cellular processes such as differentiation, adhesion, proliferation, and cell-cell recognition. In pathogenic fungus Cryptococcus neoformans, glucosylceramide serves as an antigen that elicits an antibody response in patients and it is essential for fungal growth in host extracellular environment.
Probab=91.30 E-value=9.9 Score=33.61 Aligned_cols=134 Identities=19% Similarity=0.136 Sum_probs=78.4
Q ss_pred ceEEEEEeccCCCCCchhHHHHHHHHhhcC--CEEEecccccCcchhHHHHHHHHHHHhcCCceEEEEeccceeeeHHHH
Q 018257 128 GIIIRFVIGHSATSGGILDKAIDAEEKMHG--DFLRLEHIEGYLELSAKTKTYFATAVSMWDAEFYIKVDDDVHVNLATL 205 (359)
Q Consensus 128 ~i~v~FvlG~s~~~~~~~~~~I~~E~~~~~--Dil~~df~DsY~nLt~Kt~~~~~wa~~~~~a~fvlKvDDDvfVn~~~L 205 (359)
.+.+++|...+.+ ++ ...+.+-.+.|. ++......... ....|... +..+.+....+|++..|+|+.+..+.|
T Consensus 30 ~~eiivVdd~s~d--~t-~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~-~n~g~~~a~~d~i~~~D~D~~~~~~~l 104 (196)
T cd02520 30 KYEILFCVQDEDD--PA-IPVVRKLIAKYPNVDARLLIGGEKV-GINPKVNN-LIKGYEEARYDILVISDSDISVPPDYL 104 (196)
T ss_pred CeEEEEEeCCCcc--hH-HHHHHHHHHHCCCCcEEEEecCCcC-CCCHhHHH-HHHHHHhCCCCEEEEECCCceEChhHH
Confidence 3678888776652 22 334444445554 33222211111 12234332 344555567899999999999998888
Q ss_pred HHHHhhcCCCCCeeEEecccCcccccCCCccccCccccccCCCCccccccCCCeeeeCHHHHHHHHHhccccCCCCcchH
Q 018257 206 GMTLAAHRTKPRVYVGCMKSGPVLARKGVKYYEPEYWKFGEIGNKYFRHATGQLYALSKDLATYISINQHLLHKYANEDV 285 (359)
Q Consensus 206 ~~~L~~~~~~~~ly~G~~~~~pv~r~~~~K~~~p~~~~f~~p~~~Yp~y~~G~gYvlS~dla~~i~~~~~~l~~~~~EDV 285 (359)
...+.... .+. +|.+.+ .++.|++.++.+++.+.+.--. ....+..||.
T Consensus 105 ~~l~~~~~-~~~--~~~v~~---------------------------~~~~g~~~~~r~~~~~~~ggf~-~~~~~~~eD~ 153 (196)
T cd02520 105 RRMVAPLM-DPG--VGLVTC---------------------------LCAFGKSMALRREVLDAIGGFE-AFADYLAEDY 153 (196)
T ss_pred HHHHHHhh-CCC--CCeEEe---------------------------ecccCceeeeEHHHHHhccChH-HHhHHHHHHH
Confidence 88877642 122 122211 0367899999999998774321 1222347999
Q ss_pred HHHHHHhcCCCe
Q 018257 286 SLGSWFIGLDVE 297 (359)
Q Consensus 286 ~vG~~l~~l~v~ 297 (359)
.++.-+...|.+
T Consensus 154 ~l~~rl~~~G~~ 165 (196)
T cd02520 154 FLGKLIWRLGYR 165 (196)
T ss_pred HHHHHHHHcCCe
Confidence 999988666543
No 22
>PRK11204 N-glycosyltransferase; Provisional
Probab=90.00 E-value=20 Score=35.84 Aligned_cols=192 Identities=13% Similarity=0.085 Sum_probs=97.0
Q ss_pred ceeEEEEEeCCCCCHHHHHHHHHHhhhcchhhhhhhccCceEEEEEeccCCCCCchhHHHHHHHHhhcCCEEEecccccC
Q 018257 89 KYFMVIGINTAFSSRKRRDSVRATWMPQGEKRKMLEEAKGIIIRFVIGHSATSGGILDKAIDAEEKMHGDFLRLEHIEGY 168 (359)
Q Consensus 89 ~~~lli~V~S~~~~~~rR~aIR~TW~~~~~~l~~l~~~~~i~v~FvlG~s~~~~~~~~~~I~~E~~~~~Dil~~df~DsY 168 (359)
.+.+-|+|.+--.. +.|++|-.+-.. . ......++.+-..+. +.....+++..+.+..+...+..+
T Consensus 53 ~p~vsViIp~yne~----~~i~~~l~sl~~----q-~yp~~eiiVvdD~s~---d~t~~~l~~~~~~~~~v~~i~~~~-- 118 (420)
T PRK11204 53 YPGVSILVPCYNEG----ENVEETISHLLA----L-RYPNYEVIAINDGSS---DNTGEILDRLAAQIPRLRVIHLAE-- 118 (420)
T ss_pred CCCEEEEEecCCCH----HHHHHHHHHHHh----C-CCCCeEEEEEECCCC---ccHHHHHHHHHHhCCcEEEEEcCC--
Confidence 34566666654322 345555443211 0 012344544443333 233444555555666565554332
Q ss_pred cchhHHHHHHHHHHHhcCCceEEEEeccceeeeHHHHHHHHhhcCCCCCeeEEecccCcccccCCC---ccccCcccc-c
Q 018257 169 LELSAKTKTYFATAVSMWDAEFYIKVDDDVHVNLATLGMTLAAHRTKPRVYVGCMKSGPVLARKGV---KYYEPEYWK-F 244 (359)
Q Consensus 169 ~nLt~Kt~~~~~wa~~~~~a~fvlKvDDDvfVn~~~L~~~L~~~~~~~~ly~G~~~~~pv~r~~~~---K~~~p~~~~-f 244 (359)
|.. |. ..+..+.+..+.+|++..|+|..+..+.|...++.....+++ |.+.+.+...+..+ +....++.. +
T Consensus 119 -n~G-ka-~aln~g~~~a~~d~i~~lDaD~~~~~d~L~~l~~~~~~~~~v--~~v~g~~~~~~~~~~~~~~~~~~~~~~~ 193 (420)
T PRK11204 119 -NQG-KA-NALNTGAAAARSEYLVCIDGDALLDPDAAAYMVEHFLHNPRV--GAVTGNPRIRNRSTLLGRIQVGEFSSII 193 (420)
T ss_pred -CCC-HH-HHHHHHHHHcCCCEEEEECCCCCCChhHHHHHHHHHHhCCCe--EEEECCceeccchhHHHHHHHHHHHHhh
Confidence 332 43 334555555688999999999999999998888776433432 33322221111110 000000000 0
Q ss_pred c-----CCCCccccccCCCeeeeCHHHHHHHHHhccccCCCCcchHHHHHHHhcCC--CeEecCC
Q 018257 245 G-----EIGNKYFRHATGQLYALSKDLATYISINQHLLHKYANEDVSLGSWFIGLD--VEHVDDR 302 (359)
Q Consensus 245 ~-----~p~~~Yp~y~~G~gYvlS~dla~~i~~~~~~l~~~~~EDV~vG~~l~~l~--v~~~~~~ 302 (359)
+ ......+...+|.+.++.++++..+--- -+....||+.++.-+...| +...++.
T Consensus 194 ~~~~~~~~~~~~~~~~~G~~~~~rr~~l~~vgg~---~~~~~~ED~~l~~rl~~~G~~i~~~p~~ 255 (420)
T PRK11204 194 GLIKRAQRVYGRVFTVSGVITAFRKSALHEVGYW---STDMITEDIDISWKLQLRGWDIRYEPRA 255 (420)
T ss_pred hHHHHHHHHhCCceEecceeeeeeHHHHHHhCCC---CCCcccchHHHHHHHHHcCCeEEecccc
Confidence 0 0000112235788899999998776321 1223479999998885544 4444443
No 23
>cd04196 GT_2_like_d Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=89.92 E-value=8.7 Score=33.68 Aligned_cols=177 Identities=14% Similarity=0.044 Sum_probs=88.6
Q ss_pred HHHHHHhhhcchhhhhhhccCceEEEEEeccCCCCCchhHHHHHHHHhhcC-CEEEecccccCcchhHHHHHHHHHHHhc
Q 018257 107 DSVRATWMPQGEKRKMLEEAKGIIIRFVIGHSATSGGILDKAIDAEEKMHG-DFLRLEHIEGYLELSAKTKTYFATAVSM 185 (359)
Q Consensus 107 ~aIR~TW~~~~~~l~~l~~~~~i~v~FvlG~s~~~~~~~~~~I~~E~~~~~-Dil~~df~DsY~nLt~Kt~~~~~wa~~~ 185 (359)
+.|.++.-+.... ....+.+++|-..+.+ + ....+.+-...++ .+.......+. .... .+..+...
T Consensus 11 ~~l~~~l~sl~~q-----~~~~~eiiVvddgS~d--~-t~~~~~~~~~~~~~~~~~~~~~~~~-G~~~----~~n~g~~~ 77 (214)
T cd04196 11 KYLREQLDSILAQ-----TYKNDELIISDDGSTD--G-TVEIIKEYIDKDPFIIILIRNGKNL-GVAR----NFESLLQA 77 (214)
T ss_pred HHHHHHHHHHHhC-----cCCCeEEEEEeCCCCC--C-cHHHHHHHHhcCCceEEEEeCCCCc-cHHH----HHHHHHHh
Confidence 4566666554210 1125667777655542 2 2233433334443 23333332222 2222 22233445
Q ss_pred CCceEEEEeccceeeeHHHHHHHHhh-cC-CCCCeeEEecc----cCcccccCC--CccccCccccccCCCCccccccCC
Q 018257 186 WDAEFYIKVDDDVHVNLATLGMTLAA-HR-TKPRVYVGCMK----SGPVLARKG--VKYYEPEYWKFGEIGNKYFRHATG 257 (359)
Q Consensus 186 ~~a~fvlKvDDDvfVn~~~L~~~L~~-~~-~~~~ly~G~~~----~~pv~r~~~--~K~~~p~~~~f~~p~~~Yp~y~~G 257 (359)
...+|++..|+|..+.++.|..++.. .. +...++.|.+. .+....... ...+.+.... .......++.|
T Consensus 78 ~~g~~v~~ld~Dd~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~ 154 (214)
T cd04196 78 ADGDYVFFCDQDDIWLPDKLERLLKAFLKDDKPLLVYSDLELVDENGNPIGESFFEYQKIKPGTSF---NNLLFQNVVTG 154 (214)
T ss_pred CCCCEEEEECCCcccChhHHHHHHHHHhcCCCceEEecCcEEECCCCCCcccccccccccCCccCH---HHHHHhCccCC
Confidence 68999999999999998888888876 22 33334444332 111111100 0000000000 00112244678
Q ss_pred CeeeeCHHHHHHHHHhccccCCCCcchHHHHHHHhcCC-CeEecC
Q 018257 258 QLYALSKDLATYISINQHLLHKYANEDVSLGSWFIGLD-VEHVDD 301 (359)
Q Consensus 258 ~gYvlS~dla~~i~~~~~~l~~~~~EDV~vG~~l~~l~-v~~~~~ 301 (359)
+++++.++++..+....... ...||.++...+...+ +..++.
T Consensus 155 ~~~~~r~~~~~~~~~~~~~~--~~~~D~~~~~~~~~~~~~~~~~~ 197 (214)
T cd04196 155 CTMAFNRELLELALPFPDAD--VIMHDWWLALLASAFGKVVFLDE 197 (214)
T ss_pred ceeeEEHHHHHhhccccccc--cccchHHHHHHHHHcCceEEcch
Confidence 99999999999876543332 4578888877665443 444443
No 24
>cd06421 CESA_CelA_like CESA_CelA_like are involved in the elongation of the glucan chain of cellulose. Family of proteins related to Agrobacterium tumefaciens CelA and Gluconacetobacter xylinus BscA. These proteins are involved in the elongation of the glucan chain of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues. They are putative catalytic subunit of cellulose synthase, which is a glycosyltransferase using UDP-glucose as the substrate. The catalytic subunit is an integral membrane protein with 6 transmembrane segments and it is postulated that the protein is anchored in the membrane at the N-terminal end.
Probab=89.73 E-value=13 Score=33.14 Aligned_cols=120 Identities=13% Similarity=0.009 Sum_probs=67.7
Q ss_pred HHHHHhcCCceEEEEeccceeeeHHHHHHHHhhcCCCCCee-E-Eecc--c-Ccc---cccC--CCccccCc-cccccCC
Q 018257 179 FATAVSMWDAEFYIKVDDDVHVNLATLGMTLAAHRTKPRVY-V-GCMK--S-GPV---LARK--GVKYYEPE-YWKFGEI 247 (359)
Q Consensus 179 ~~wa~~~~~a~fvlKvDDDvfVn~~~L~~~L~~~~~~~~ly-~-G~~~--~-~pv---~r~~--~~K~~~p~-~~~f~~p 247 (359)
+..+.+..+.+|++.+|+|.++..+.|..++......+++. + |... . ... .+.. ....+... .+. .
T Consensus 76 ~n~~~~~a~~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~ 152 (234)
T cd06421 76 LNNALAHTTGDFVAILDADHVPTPDFLRRTLGYFLDDPKVALVQTPQFFYNPDPFDWLADGAPNEQELFYGVIQPG---R 152 (234)
T ss_pred HHHHHHhCCCCEEEEEccccCcCccHHHHHHHHHhcCCCeEEEecceEEecCCcchhHHHHHHHHHHHHHHHHHHH---H
Confidence 34444445889999999999999998888887764434321 2 2211 1 110 0000 00001000 000 0
Q ss_pred CCccccccCCCeeeeCHHHHHHHHHhccccCCCCcchHHHHHHHhcCC--CeEecCCCc
Q 018257 248 GNKYFRHATGQLYALSKDLATYISINQHLLHKYANEDVSLGSWFIGLD--VEHVDDRRL 304 (359)
Q Consensus 248 ~~~Yp~y~~G~gYvlS~dla~~i~~~~~~l~~~~~EDV~vG~~l~~l~--v~~~~~~~f 304 (359)
......++.|++.++++++++.+---. ..+..||..++.-+...| +..+++...
T Consensus 153 ~~~~~~~~~g~~~~~r~~~~~~ig~~~---~~~~~eD~~l~~r~~~~g~~i~~~~~~~~ 208 (234)
T cd06421 153 DRWGAAFCCGSGAVVRREALDEIGGFP---TDSVTEDLATSLRLHAKGWRSVYVPEPLA 208 (234)
T ss_pred hhcCCceecCceeeEeHHHHHHhCCCC---ccceeccHHHHHHHHHcCceEEEecCccc
Confidence 011244578999999999998864321 234579999998886554 455555443
No 25
>cd04186 GT_2_like_c Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=86.99 E-value=16 Score=30.25 Aligned_cols=81 Identities=17% Similarity=0.131 Sum_probs=53.4
Q ss_pred cCCceEEEEeccceeeeHHHHHHHHhhcCCCCCe-eEEecccCcccccCCCccccCccccccCCCCccccccCCCeeeeC
Q 018257 185 MWDAEFYIKVDDDVHVNLATLGMTLAAHRTKPRV-YVGCMKSGPVLARKGVKYYEPEYWKFGEIGNKYFRHATGQLYALS 263 (359)
Q Consensus 185 ~~~a~fvlKvDDDvfVn~~~L~~~L~~~~~~~~l-y~G~~~~~pv~r~~~~K~~~p~~~~f~~p~~~Yp~y~~G~gYvlS 263 (359)
..+.+|++..|||..+..+.|..++......+.+ .++.. +.|++.+++
T Consensus 72 ~~~~~~i~~~D~D~~~~~~~l~~~~~~~~~~~~~~~~~~~-------------------------------~~~~~~~~~ 120 (166)
T cd04186 72 EAKGDYVLLLNPDTVVEPGALLELLDAAEQDPDVGIVGPK-------------------------------VSGAFLLVR 120 (166)
T ss_pred hCCCCEEEEECCCcEECccHHHHHHHHHHhCCCceEEEcc-------------------------------CceeeEeee
Confidence 3489999999999999998888888754332222 11111 577889999
Q ss_pred HHHHHHHHHhccccCCCCcchHHHHHHHhcCCCe
Q 018257 264 KDLATYISINQHLLHKYANEDVSLGSWFIGLDVE 297 (359)
Q Consensus 264 ~dla~~i~~~~~~l~~~~~EDV~vG~~l~~l~v~ 297 (359)
+++++.+-.-...... ..||..+..-+...|.+
T Consensus 121 ~~~~~~~~~~~~~~~~-~~eD~~~~~~~~~~g~~ 153 (166)
T cd04186 121 REVFEEVGGFDEDFFL-YYEDVDLCLRARLAGYR 153 (166)
T ss_pred HHHHHHcCCCChhhhc-cccHHHHHHHHHHcCCe
Confidence 9988876432222212 56899888777544433
No 26
>cd06423 CESA_like CESA_like is the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis protein catalyzes the
Probab=86.52 E-value=14 Score=30.29 Aligned_cols=94 Identities=11% Similarity=0.131 Sum_probs=49.7
Q ss_pred HHHHHHhcCCceEEEEeccceeeeHHHHHHHHhhcCCCCC--eeEEeccc---C-cccccC-CCccccCcccc-ccCCCC
Q 018257 178 YFATAVSMWDAEFYIKVDDDVHVNLATLGMTLAAHRTKPR--VYVGCMKS---G-PVLARK-GVKYYEPEYWK-FGEIGN 249 (359)
Q Consensus 178 ~~~wa~~~~~a~fvlKvDDDvfVn~~~L~~~L~~~~~~~~--ly~G~~~~---~-pv~r~~-~~K~~~p~~~~-f~~p~~ 249 (359)
.+.++.+..+.+|++.+|+|..+....|..++......+. +..|.... . ...... ..++....... .+....
T Consensus 69 ~~n~~~~~~~~~~i~~~D~D~~~~~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (180)
T cd06423 69 ALNAGLRHAKGDIVVVLDADTILEPDALKRLVVPFFADPKVGAVQGRVRVRNGSENLLTRLQAIEYLSIFRLGRRAQSAL 148 (180)
T ss_pred HHHHHHHhcCCCEEEEECCCCCcChHHHHHHHHHhccCCCeeeEeeeEEEecCcCcceeccchheecceeeeeeehhhee
Confidence 3445555458999999999999998888877555433332 23333321 1 111000 00111110000 000012
Q ss_pred ccccccCCCeeeeCHHHHHHHH
Q 018257 250 KYFRHATGQLYALSKDLATYIS 271 (359)
Q Consensus 250 ~Yp~y~~G~gYvlS~dla~~i~ 271 (359)
.+...+.|.+++++++++..+-
T Consensus 149 ~~~~~~~g~~~~~~~~~~~~~g 170 (180)
T cd06423 149 GGVLVLSGAFGAFRREALREVG 170 (180)
T ss_pred cceeecCchHHHHHHHHHHHhC
Confidence 3445678999999999888754
No 27
>PF04646 DUF604: Protein of unknown function, DUF604; InterPro: IPR006740 This family includes a conserved region found in several uncharacterised plant proteins.
Probab=86.42 E-value=1.1 Score=42.87 Aligned_cols=51 Identities=18% Similarity=0.136 Sum_probs=39.2
Q ss_pred CCCeeeeCHHHHHHHHHhcc----ccCCCCcchHHHHHHHhcCCCeEecCCCccc
Q 018257 256 TGQLYALSKDLATYISINQH----LLHKYANEDVSLGSWFIGLDVEHVDDRRLCC 306 (359)
Q Consensus 256 ~G~gYvlS~dla~~i~~~~~----~l~~~~~EDV~vG~~l~~l~v~~~~~~~f~~ 306 (359)
+|+|++||..||+.|..... ..+.+.--|--|..|+..+++....+++|+-
T Consensus 12 GGgG~~iS~pLa~~L~~~~d~C~~r~~~~~g~D~~i~~C~~~lgv~LT~e~g~hQ 66 (255)
T PF04646_consen 12 GGGGFAISYPLAKALAKMQDDCIERYPHLYGGDQRIQACIAELGVPLTKEPGFHQ 66 (255)
T ss_pred cCceeEEcHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCCceecCCcee
Confidence 89999999999999998532 2233445789999999889887666666654
No 28
>cd06439 CESA_like_1 CESA_like_1 is a member of the cellulose synthase (CESA) superfamily. This is a subfamily of cellulose synthase (CESA) superfamily. CESA superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members of the superfamily include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins.
Probab=86.39 E-value=25 Score=31.91 Aligned_cols=119 Identities=16% Similarity=0.118 Sum_probs=60.7
Q ss_pred HHHHHhcCCceEEEEeccceeeeHHHHHHHHhhcCC-CCCeeEEeccc-CcccccCCCc--cccCccccccCCCCccccc
Q 018257 179 FATAVSMWDAEFYIKVDDDVHVNLATLGMTLAAHRT-KPRVYVGCMKS-GPVLARKGVK--YYEPEYWKFGEIGNKYFRH 254 (359)
Q Consensus 179 ~~wa~~~~~a~fvlKvDDDvfVn~~~L~~~L~~~~~-~~~ly~G~~~~-~pv~r~~~~K--~~~p~~~~f~~p~~~Yp~y 254 (359)
+..+.+....+|++-+|+|+.+..+.|...+..... ...+..|.... .+........ |.....+..-......+..
T Consensus 101 ~n~gi~~a~~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (251)
T cd06439 101 LNRALALATGEIVVFTDANALLDPDALRLLVRHFADPSVGAVSGELVIVDGGGSGSGEGLYWKYENWLKRAESRLGSTVG 180 (251)
T ss_pred HHHHHHHcCCCEEEEEccccCcCHHHHHHHHHHhcCCCccEEEeEEEecCCcccchhHHHHHHHHHHHHHHHHhcCCeee
Confidence 344444456799999999999998888888877642 22333343321 1100000000 0000000000000112334
Q ss_pred cCCCeeeeCHHHHHHHHHhccccCCCCcchHHHHHHHhcCC--CeEecCCC
Q 018257 255 ATGQLYALSKDLATYISINQHLLHKYANEDVSLGSWFIGLD--VEHVDDRR 303 (359)
Q Consensus 255 ~~G~gYvlS~dla~~i~~~~~~l~~~~~EDV~vG~~l~~l~--v~~~~~~~ 303 (359)
+.|+++.+.+++.. ..-.....||..++.-+...| +..+++..
T Consensus 181 ~~g~~~~~rr~~~~------~~~~~~~~eD~~l~~~~~~~G~~~~~~~~~~ 225 (251)
T cd06439 181 ANGAIYAIRRELFR------PLPADTINDDFVLPLRIARQGYRVVYEPDAV 225 (251)
T ss_pred ecchHHHhHHHHhc------CCCcccchhHHHHHHHHHHcCCeEEeccccE
Confidence 67777777777665 112223479999988886665 44444433
No 29
>cd06532 Glyco_transf_25 Glycosyltransferase family 25 [lipooligosaccharide (LOS) biosynthesis protein] is a family of glycosyltransferases involved in LOS biosynthesis. The members include the beta(1,4) galactosyltransferases: Lgt2 of Moraxella catarrhalis, LgtB and LgtE of Neisseria gonorrhoeae and Lic2A of Haemophilus influenzae. M. catarrhalis Lgt2 catalyzes the addition of galactose (Gal) to the growing chain of LOS on the cell surface. N. gonorrhoeae LgtB and LgtE link Gal-beta(1,4) to GlcNAc (N-acetylglucosamine) and Glc (glucose), respectively. The genes encoding LgtB and LgtE are two genes of a five gene locus involved in the synthesis of gonococcal LOS. LgtE is believed to perform the first step in LOS biosynthesis.
Probab=86.23 E-value=7.9 Score=32.57 Aligned_cols=116 Identities=13% Similarity=0.060 Sum_probs=64.8
Q ss_pred EEeCCCCCHHHHHHHHHHhhhcchhhhhhhccCceEEEEEeccCCCCCchhHHHHHHHHhhcCCE-EEecccccCcchhH
Q 018257 95 GINTAFSSRKRRDSVRATWMPQGEKRKMLEEAKGIIIRFVIGHSATSGGILDKAIDAEEKMHGDF-LRLEHIEGYLELSA 173 (359)
Q Consensus 95 ~V~S~~~~~~rR~aIR~TW~~~~~~l~~l~~~~~i~v~FvlG~s~~~~~~~~~~I~~E~~~~~Di-l~~df~DsY~nLt~ 173 (359)
.|.+-+...+||+.+++.-... ++.+.|+-|-.... .....+......+... ...+..-+--.-.+
T Consensus 3 ~vInL~~~~~Rr~~~~~~~~~~-----------~~~~~~~~Avd~~~--~~~~~~~~~~~~~~~~~~~~~l~~gEiGC~l 69 (128)
T cd06532 3 FVINLDRSTDRRERMEAQLAAL-----------GLDFEFFDAVDGKD--LSEEELAALYDALFLPRYGRPLTPGEIGCFL 69 (128)
T ss_pred EEEECCCCHHHHHHHHHHHHHc-----------CCCeEEEecccccc--CCHHHHHHHhHHHhhhhcCCCCChhhHHHHH
Confidence 4567788889999998854433 34566776655421 1111222111100000 00001111111123
Q ss_pred HHHHHHHHHHhcCCceEEEEeccceeeeHHHHHHHHhhcCCCCCeeEEecccCcccccCCCccccCccccccCCCCcccc
Q 018257 174 KTKTYFATAVSMWDAEFYIKVDDDVHVNLATLGMTLAAHRTKPRVYVGCMKSGPVLARKGVKYYEPEYWKFGEIGNKYFR 253 (359)
Q Consensus 174 Kt~~~~~wa~~~~~a~fvlKvDDDvfVn~~~L~~~L~~~~~~~~ly~G~~~~~pv~r~~~~K~~~p~~~~f~~p~~~Yp~ 253 (359)
-.+..++-+.+ .+.++.+-..||+.+..+
T Consensus 70 SH~~~w~~~~~-~~~~~alIlEDDv~~~~~-------------------------------------------------- 98 (128)
T cd06532 70 SHYKLWQKIVE-SNLEYALILEDDAILDPD-------------------------------------------------- 98 (128)
T ss_pred HHHHHHHHHHH-cCCCeEEEEccCcEECCC--------------------------------------------------
Confidence 34444554443 366889999999988776
Q ss_pred ccCCCeeeeCHHHHHHHHHhccc
Q 018257 254 HATGQLYALSKDLATYISINQHL 276 (359)
Q Consensus 254 y~~G~gYvlS~dla~~i~~~~~~ 276 (359)
+..||++|+..|+++......
T Consensus 99 --~~~~Y~vs~~~A~~ll~~~~~ 119 (128)
T cd06532 99 --GTAGYLVSRKGAKKLLAALEP 119 (128)
T ss_pred --CceEEEeCHHHHHHHHHhCCC
Confidence 347899999999999987554
No 30
>cd04187 DPM1_like_bac Bacterial DPM1_like enzymes are related to eukaryotic DPM1. A family of bacterial enzymes related to eukaryotic DPM1; Although the mechanism of eukaryotic enzyme is well studied, the mechanism of the bacterial enzymes is not well understood. The eukaryotic DPM1 is the catalytic subunit of eukaryotic Dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. The enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. This protein family belongs to Glycosyltransferase 2 superfamily.
Probab=85.93 E-value=9.6 Score=32.91 Aligned_cols=134 Identities=13% Similarity=0.074 Sum_probs=72.6
Q ss_pred ceEEEEEeccCCCCCchhHHHHHHHHhhcCCEEEecccccCcchhHHHHHHHHHHHhcCCceEEEEeccceeeeHHHHHH
Q 018257 128 GIIIRFVIGHSATSGGILDKAIDAEEKMHGDFLRLEHIEGYLELSAKTKTYFATAVSMWDAEFYIKVDDDVHVNLATLGM 207 (359)
Q Consensus 128 ~i~v~FvlG~s~~~~~~~~~~I~~E~~~~~Dil~~df~DsY~nLt~Kt~~~~~wa~~~~~a~fvlKvDDDvfVn~~~L~~ 207 (359)
.+.++.+-+.+.. +. ...+.....++..+..+.....+. |. .++..+......+|++.+|+|.....+.|..
T Consensus 29 ~~eiivvdd~s~d--~t-~~~~~~~~~~~~~i~~i~~~~n~G----~~-~a~n~g~~~a~~d~i~~~D~D~~~~~~~l~~ 100 (181)
T cd04187 29 DYEIIFVDDGSTD--RT-LEILRELAARDPRVKVIRLSRNFG----QQ-AALLAGLDHARGDAVITMDADLQDPPELIPE 100 (181)
T ss_pred CeEEEEEeCCCCc--cH-HHHHHHHHhhCCCEEEEEecCCCC----cH-HHHHHHHHhcCCCEEEEEeCCCCCCHHHHHH
Confidence 4566666665542 22 233444444555565555443321 22 3334444444669999999999999888888
Q ss_pred HHhhcCCCCCeeEEeccc--CcccccCCCccccCccccccCCCCccccccCCCeeeeCHHHHHHHHH
Q 018257 208 TLAAHRTKPRVYVGCMKS--GPVLARKGVKYYEPEYWKFGEIGNKYFRHATGQLYALSKDLATYISI 272 (359)
Q Consensus 208 ~L~~~~~~~~ly~G~~~~--~pv~r~~~~K~~~p~~~~f~~p~~~Yp~y~~G~gYvlS~dla~~i~~ 272 (359)
.++...+...+.+|.... .+..+.-..+.+......+ .....+...|+.+++++.+++.+..
T Consensus 101 l~~~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~r~~~~~i~~ 164 (181)
T cd04187 101 MLAKWEEGYDVVYGVRKNRKESWLKRLTSKLFYRLINKL---SGVDIPDNGGDFRLMDRKVVDALLL 164 (181)
T ss_pred HHHHHhCCCcEEEEEecCCcchHHHHHHHHHHHHHHHHH---cCCCCCCCCCCEEEEcHHHHHHHHh
Confidence 887654555666666431 1111000011110000000 1123345678889999999998764
No 31
>cd04185 GT_2_like_b Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=84.51 E-value=27 Score=30.56 Aligned_cols=91 Identities=14% Similarity=0.068 Sum_probs=56.1
Q ss_pred HHHHHHHHhcCCceEEEEeccceeeeHHHHHHHHhhcC-CCCCeeEEecccCcccccCCCccccCccccccCCCCccccc
Q 018257 176 KTYFATAVSMWDAEFYIKVDDDVHVNLATLGMTLAAHR-TKPRVYVGCMKSGPVLARKGVKYYEPEYWKFGEIGNKYFRH 254 (359)
Q Consensus 176 ~~~~~wa~~~~~a~fvlKvDDDvfVn~~~L~~~L~~~~-~~~~ly~G~~~~~pv~r~~~~K~~~p~~~~f~~p~~~Yp~y 254 (359)
-.+++++. ..+.+|++..|+|..+..+.|..++.... +.-.++.|... .. .+
T Consensus 69 n~~~~~a~-~~~~d~v~~ld~D~~~~~~~l~~l~~~~~~~~~~~~~~~~~-------------~~-------~~------ 121 (202)
T cd04185 69 YEGVRRAY-ELGYDWIWLMDDDAIPDPDALEKLLAYADKDNPQFLAPLVL-------------DP-------DG------ 121 (202)
T ss_pred HHHHHHHh-ccCCCEEEEeCCCCCcChHHHHHHHHHHhcCCceEecceeE-------------cC-------CC------
Confidence 34556665 56889999999999999888777776653 11122221110 00 01
Q ss_pred cCCCeeeeCHHHHHHHHHhccccCCCCcchHHHHHHHhcCC
Q 018257 255 ATGQLYALSKDLATYISINQHLLHKYANEDVSLGSWFIGLD 295 (359)
Q Consensus 255 ~~G~gYvlS~dla~~i~~~~~~l~~~~~EDV~vG~~l~~l~ 295 (359)
.+++.++.++++..+--..... .+..||+.++.-+...|
T Consensus 122 -~~~~~~~~~~~~~~~g~~~~~~-~~~~eD~~~~~r~~~~G 160 (202)
T cd04185 122 -SFVGVLISRRVVEKIGLPDKEF-FIWGDDTEYTLRASKAG 160 (202)
T ss_pred -ceEEEEEeHHHHHHhCCCChhh-hccchHHHHHHHHHHcC
Confidence 3356789999988774322222 23469999988876554
No 32
>cd06434 GT2_HAS Hyaluronan synthases catalyze polymerization of hyaluronan. Hyaluronan synthases (HASs) are bi-functional glycosyltransferases that catalyze polymerization of hyaluronan. HASs transfer both GlcUA and GlcNAc in beta-(1,3) and beta-(1,4) linkages, respectively to the hyaluronan chain using UDP-GlcNAc and UDP-GlcUA as substrates. HA is made as a free glycan, not attached to a protein or lipid. HASs do not need a primer for HA synthesis; they initiate HA biosynthesis de novo with only UDP-GlcNAc, UDP-GlcUA, and Mg2+. Hyaluronan (HA) is a linear heteropolysaccharide composed of (1-3)-linked beta-D-GlcUA-beta-D-GlcNAc disaccharide repeats. It can be found in vertebrates and a few microbes and is typically on the cell surface or in the extracellular space, but is also found inside mammalian cells. Hyaluronan has several physiochemical and biological functions such as space filling, lubrication, and providing a hydrated matrix through which cells can migrate.
Probab=82.68 E-value=11 Score=33.90 Aligned_cols=152 Identities=13% Similarity=0.164 Sum_probs=77.6
Q ss_pred eEEEEEeccCCCCCchhHHHHHHHHhhcCCEEEecccccCcchhHHHHHHHHHHHhcCCceEEEEeccceeeeHHHHHHH
Q 018257 129 IIIRFVIGHSATSGGILDKAIDAEEKMHGDFLRLEHIEGYLELSAKTKTYFATAVSMWDAEFYIKVDDDVHVNLATLGMT 208 (359)
Q Consensus 129 i~v~FvlG~s~~~~~~~~~~I~~E~~~~~Dil~~df~DsY~nLt~Kt~~~~~wa~~~~~a~fvlKvDDDvfVn~~~L~~~ 208 (359)
..+++|...+. +.....+ .+...+..+.... .+ | .-|.. .+..+.+..+.+|++.+|+|+.+..+.|...
T Consensus 29 ~eiivvdd~s~---d~~~~~l-~~~~~~~~~~v~~-~~---~-~g~~~-a~n~g~~~a~~d~v~~lD~D~~~~~~~l~~l 98 (235)
T cd06434 29 LEIIVVTDGDD---EPYLSIL-SQTVKYGGIFVIT-VP---H-PGKRR-ALAEGIRHVTTDIVVLLDSDTVWPPNALPEM 98 (235)
T ss_pred CEEEEEeCCCC---hHHHHHH-HhhccCCcEEEEe-cC---C-CChHH-HHHHHHHHhCCCEEEEECCCceeChhHHHHH
Confidence 45666665554 2222333 3445566655553 22 1 12332 2233444458999999999999999999888
Q ss_pred HhhcCCCCCeeEEecccCcccccC-CCcc------ccC-------ccccccCCCCccccccCCCeeeeCHHHHHHHHHhc
Q 018257 209 LAAHRTKPRVYVGCMKSGPVLARK-GVKY------YEP-------EYWKFGEIGNKYFRHATGQLYALSKDLATYISINQ 274 (359)
Q Consensus 209 L~~~~~~~~ly~G~~~~~pv~r~~-~~K~------~~p-------~~~~f~~p~~~Yp~y~~G~gYvlS~dla~~i~~~~ 274 (359)
+.... .+.+ |.+.+....... ...| +.. ..... .. -...++|...++.++++..+.-..
T Consensus 99 ~~~~~-~~~v--~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~~~~G~~~~~rr~~l~~~~~~~ 171 (235)
T cd06434 99 LKPFE-DPKV--GGVGTNQRILRPRDSKWSFLAAEYLERRNEEIRAAMSY---DG-GVPCLSGRTAAYRTEILKDFLFLE 171 (235)
T ss_pred HHhcc-CCCE--eEEcCceEeecCcccHHHHHHHHHHHHHHHHHHHHHhh---CC-CEEEccCcHHHHHHHHHhhhhhHH
Confidence 88775 3332 222110000000 0111 000 00000 00 012356777778888877653221
Q ss_pred c-------ccCCCCcchHHHHHHHhcCCCe
Q 018257 275 H-------LLHKYANEDVSLGSWFIGLDVE 297 (359)
Q Consensus 275 ~-------~l~~~~~EDV~vG~~l~~l~v~ 297 (359)
. ..+....||..++.-+...|..
T Consensus 172 ~~~~~~~~~~~~~~~eD~~l~~~~~~~g~~ 201 (235)
T cd06434 172 EFTNETFMGRRLNAGDDRFLTRYVLSHGYK 201 (235)
T ss_pred HhhhhhhcCCCCCcCchHHHHHHHHHCCCe
Confidence 1 1233467999998888665543
No 33
>cd06433 GT_2_WfgS_like WfgS and WfeV are involved in O-antigen biosynthesis. Escherichia coli WfgS and Shigella dysenteriae WfeV are glycosyltransferase 2 family enzymes involved in O-antigen biosynthesis. GT-2 enzymes have GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=81.89 E-value=9.8 Score=32.69 Aligned_cols=113 Identities=12% Similarity=-0.037 Sum_probs=62.9
Q ss_pred HHHHHHhcCCceEEEEeccceeeeHHHHHHHHhhcC--CCCCeeEEecc--cCcccccCCCccccCccccccCCCCcccc
Q 018257 178 YFATAVSMWDAEFYIKVDDDVHVNLATLGMTLAAHR--TKPRVYVGCMK--SGPVLARKGVKYYEPEYWKFGEIGNKYFR 253 (359)
Q Consensus 178 ~~~wa~~~~~a~fvlKvDDDvfVn~~~L~~~L~~~~--~~~~ly~G~~~--~~pv~r~~~~K~~~p~~~~f~~p~~~Yp~ 253 (359)
.+..+.+..+.+|++-.|+|..+..+.+...+.... +...+..|... .+... ....+. ...... .......
T Consensus 66 a~n~~~~~a~~~~v~~ld~D~~~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~~~~~-~~~~~~-~~~~~~---~~~~~~~ 140 (202)
T cd06433 66 AMNKGIALATGDIIGFLNSDDTLLPGALLAVVAAFAEHPEVDVVYGDVLLVDENGR-VIGRRR-PPPFLD---KFLLYGM 140 (202)
T ss_pred HHHHHHHHcCCCEEEEeCCCcccCchHHHHHHHHHHhCCCccEEEeeeEEEcCCCC-cccCCC-Ccchhh---hHHhhcC
Confidence 344555545789999999999999999988874432 33445556542 11100 000010 000000 1112234
Q ss_pred ccCCCeeeeCHHHHHHHHHhccccCCCCcchHHHHHHHhcCCCe
Q 018257 254 HATGQLYALSKDLATYISINQHLLHKYANEDVSLGSWFIGLDVE 297 (359)
Q Consensus 254 y~~G~gYvlS~dla~~i~~~~~~l~~~~~EDV~vG~~l~~l~v~ 297 (359)
+..|++.++++++...+-.-...+ ...||..+..-+...|..
T Consensus 141 ~~~~~~~~~~~~~~~~~~~f~~~~--~~~~D~~~~~r~~~~g~~ 182 (202)
T cd06433 141 PICHQATFFRRSLFEKYGGFDESY--RIAADYDLLLRLLLAGKI 182 (202)
T ss_pred cccCcceEEEHHHHHHhCCCchhh--CchhhHHHHHHHHHcCCc
Confidence 467788899999998875322222 235788777666555543
No 34
>PF13632 Glyco_trans_2_3: Glycosyl transferase family group 2
Probab=80.44 E-value=5.3 Score=35.08 Aligned_cols=117 Identities=16% Similarity=0.124 Sum_probs=66.8
Q ss_pred EEEEeccceeeeHHHHHHHHhhcCCCCCeeEE--ecccCcccccCCCccccCcc-c-----cccCCCCccccccCCCeee
Q 018257 190 FYIKVDDDVHVNLATLGMTLAAHRTKPRVYVG--CMKSGPVLARKGVKYYEPEY-W-----KFGEIGNKYFRHATGQLYA 261 (359)
Q Consensus 190 fvlKvDDDvfVn~~~L~~~L~~~~~~~~ly~G--~~~~~pv~r~~~~K~~~p~~-~-----~f~~p~~~Yp~y~~G~gYv 261 (359)
|++-+|+|+-+..+-|...+.... .+++-++ ...-.+ ....-.++..-++ + .........+.++.|++.+
T Consensus 1 ~v~~~DaDt~~~~d~l~~~~~~~~-~~~~~~vq~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~ 78 (193)
T PF13632_consen 1 YVLFLDADTRLPPDFLERLVAALE-DPKVDAVQGPIIFRN-RGSLLTRLQDFEYAISHGLSRLSQSSLGRPLFLSGSGML 78 (193)
T ss_pred CEEEEcCCCCCChHHHHHHHHHHh-CCCceEEEccEEecC-CCChhheeehhhhhhhhhhhHHHHHhcCCCccccCccee
Confidence 688899999999999888887765 3332222 221100 0000011111110 0 0000112346668999999
Q ss_pred eCHHHHHHHHHhccccCCCCcchHHHHHHHh--cCCCeEecCCCcccCCCC
Q 018257 262 LSKDLATYISINQHLLHKYANEDVSLGSWFI--GLDVEHVDDRRLCCGTPP 310 (359)
Q Consensus 262 lS~dla~~i~~~~~~l~~~~~EDV~vG~~l~--~l~v~~~~~~~f~~~~~~ 310 (359)
+++++++.+.--. -.....||..+|.=+. |..+..+++....+..|+
T Consensus 79 ~r~~~l~~vg~~~--~~~~~~ED~~l~~~l~~~G~~~~~~~~~~~~~~~p~ 127 (193)
T PF13632_consen 79 FRREALREVGGFD--DPFSIGEDMDLGFRLRRAGYRIVYVPDAIVYTEAPP 127 (193)
T ss_pred eeHHHHHHhCccc--ccccccchHHHHHHHHHCCCEEEEecccceeeeCCC
Confidence 9999999874211 1334579999987775 445667777655555443
No 35
>cd06435 CESA_NdvC_like NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. Bradyrhizobium japonicum synthesizes periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans during growth under hypoosmotic conditions. Two genes (ndvB, ndvC) are involved in the beta-(1, 3), beta-(1,6)-glucan synthesis. The ndvC mutant strain resulted in synthesis of altered cyclic beta-glucans composed almost entirely of beta-(1, 3)-glycosyl linkages. The periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans function for osmoregulation. The ndvC mutation also affects the ability of the bacteria to establish a successful symbiotic interaction with host plant. Thus, the beta-glucans may function as suppressors of a host defense response.
Probab=79.66 E-value=46 Score=29.88 Aligned_cols=114 Identities=17% Similarity=0.145 Sum_probs=62.5
Q ss_pred HHHHHHhc--CCceEEEEeccceeeeHHHHHHHHhhcCCCCCeeEEecccCcccccCCCccccC------cccc-ccCCC
Q 018257 178 YFATAVSM--WDAEFYIKVDDDVHVNLATLGMTLAAHRTKPRVYVGCMKSGPVLARKGVKYYEP------EYWK-FGEIG 248 (359)
Q Consensus 178 ~~~wa~~~--~~a~fvlKvDDDvfVn~~~L~~~L~~~~~~~~ly~G~~~~~pv~r~~~~K~~~p------~~~~-f~~p~ 248 (359)
.+.++.+. .+.+|++..|+|+.+..+.|..++.... .+.+ |.+.+....++....++.. ..++ .+.+.
T Consensus 73 a~n~g~~~a~~~~d~i~~lD~D~~~~~~~l~~l~~~~~-~~~~--~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (236)
T cd06435 73 ALNYALERTAPDAEIIAVIDADYQVEPDWLKRLVPIFD-DPRV--GFVQAPQDYRDGEESLFKRMCYAEYKGFFDIGMVS 149 (236)
T ss_pred HHHHHHHhcCCCCCEEEEEcCCCCcCHHHHHHHHHHhc-CCCe--eEEecCccccCCCccHHHHHHhHHHHHHHHHHhcc
Confidence 45666553 3579999999999999999999887764 2332 2221100011111111100 0000 00000
Q ss_pred -Cc-cccccCCCeeeeCHHHHHHHHHhccccCCCCcchHHHHHHHhcCCCe
Q 018257 249 -NK-YFRHATGQLYALSKDLATYISINQHLLHKYANEDVSLGSWFIGLDVE 297 (359)
Q Consensus 249 -~~-Yp~y~~G~gYvlS~dla~~i~~~~~~l~~~~~EDV~vG~~l~~l~v~ 297 (359)
.. --.++.|.+.+++++++..+---.. .+..||+-++.=+...|..
T Consensus 150 ~~~~~~~~~~g~~~~~rr~~~~~iGgf~~---~~~~eD~dl~~r~~~~G~~ 197 (236)
T cd06435 150 RNERNAIIQHGTMCLIRRSALDDVGGWDE---WCITEDSELGLRMHEAGYI 197 (236)
T ss_pred ccccCceEEecceEEEEHHHHHHhCCCCC---ccccchHHHHHHHHHCCcE
Confidence 00 0124678889999999988743221 2358999998877655543
No 36
>cd06420 GT2_Chondriotin_Pol_N N-terminal domain of Chondroitin polymerase functions as a GalNAc transferase. Chondroitin polymerase is a two domain, bi-functional protein. The N-terminal domain functions as a GalNAc transferase. The bacterial chondroitin polymerase catalyzes elongation of the chondroitin chain by alternatively transferring the GlcUA and GalNAc moiety from UDP-GlcUA and UDP-GalNAc to the non-reducing ends of the chondroitin chain. The enzyme consists of N-terminal and C-terminal domains in which the two active sites catalyze the addition of GalNAc and GlcUA, respectively. Chondroitin chains range from 40 to over 100 repeating units of the disaccharide. Sulfated chondroitins are involved in the regulation of various biological functions such as central nervous system development, wound repair, infection, growth factor signaling, and morphogenesis, in addition to its conventional structural roles. In Caenorhabditis elegans, chondroitin is an essential factor for the worm
Probab=78.81 E-value=12 Score=31.99 Aligned_cols=96 Identities=13% Similarity=0.050 Sum_probs=57.9
Q ss_pred HHHHHhcCCceEEEEeccceeeeHHHHHHHHhhcCCCCCeeEEecccCcccccCCCccccCccccccCCCCccccccCCC
Q 018257 179 FATAVSMWDAEFYIKVDDDVHVNLATLGMTLAAHRTKPRVYVGCMKSGPVLARKGVKYYEPEYWKFGEIGNKYFRHATGQ 258 (359)
Q Consensus 179 ~~wa~~~~~a~fvlKvDDDvfVn~~~L~~~L~~~~~~~~ly~G~~~~~pv~r~~~~K~~~p~~~~f~~p~~~Yp~y~~G~ 258 (359)
+..+.+....+|++..|+|..+..+.|...++...+ .....|... +... +. .. ....|+
T Consensus 71 ~n~g~~~a~g~~i~~lD~D~~~~~~~l~~~~~~~~~-~~~v~g~~~------------~~~~------~~-~~-~~~~~~ 129 (182)
T cd06420 71 RNKAIAAAKGDYLIFIDGDCIPHPDFIADHIELAEP-GVFLSGSRV------------LLNE------KL-TE-RGIRGC 129 (182)
T ss_pred HHHHHHHhcCCEEEEEcCCcccCHHHHHHHHHHhCC-CcEEeccee------------eccc------cc-ce-eEeccc
Confidence 344455557899999999999998888888876522 222223321 0000 00 00 234677
Q ss_pred eeeeCHHHHHHHHHhccccCCCCcchHHHHHHHhcCC
Q 018257 259 LYALSKDLATYISINQHLLHKYANEDVSLGSWFIGLD 295 (359)
Q Consensus 259 gYvlS~dla~~i~~~~~~l~~~~~EDV~vG~~l~~l~ 295 (359)
++++.+..+..+.--......+..||+.++.=+...|
T Consensus 130 ~~~~~r~~~~~~ggf~~~~~~~~~eD~~l~~r~~~~g 166 (182)
T cd06420 130 NMSFWKKDLLAVNGFDEEFTGWGGEDSELVARLLNSG 166 (182)
T ss_pred eEEEEHHHHHHhCCCCcccccCCcchHHHHHHHHHcC
Confidence 7888888777443322333334579999988887666
No 37
>COG1215 Glycosyltransferases, probably involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=75.35 E-value=75 Score=31.57 Aligned_cols=194 Identities=11% Similarity=0.024 Sum_probs=106.9
Q ss_pred eeEEEEEeCCCCCH-HHHHHHHHHhhhcchhhhhhhccCceEEEEEeccCCCCCchhHHHHHHHHhhcCCEEEecccccC
Q 018257 90 YFMVIGINTAFSSR-KRRDSVRATWMPQGEKRKMLEEAKGIIIRFVIGHSATSGGILDKAIDAEEKMHGDFLRLEHIEGY 168 (359)
Q Consensus 90 ~~lli~V~S~~~~~-~rR~aIR~TW~~~~~~l~~l~~~~~i~v~FvlG~s~~~~~~~~~~I~~E~~~~~Dil~~df~DsY 168 (359)
+.+-|+|.+--... --.+.++..=... -....+..|...+. +..-+.+.+-..++++.+..... -
T Consensus 54 p~vsviiP~ynE~~~~~~~~l~s~~~~d---------yp~~evivv~d~~~---d~~~~~~~~~~~~~~~~~~~~~~--~ 119 (439)
T COG1215 54 PKVSVIIPAYNEEPEVLEETLESLLSQD---------YPRYEVIVVDDGST---DETYEILEELGAEYGPNFRVIYP--E 119 (439)
T ss_pred CceEEEEecCCCchhhHHHHHHHHHhCC---------CCCceEEEECCCCC---hhHHHHHHHHHhhcCcceEEEec--c
Confidence 56666676654433 2233333332222 12356777776443 34445555555666544444422 0
Q ss_pred cchhHHHHHHHHHHHhcCCceEEEEeccceeeeHHHHHHHHhhcCCCCCe-eEEecc--cCcccccCCCccccCccc---
Q 018257 169 LELSAKTKTYFATAVSMWDAEFYIKVDDDVHVNLATLGMTLAAHRTKPRV-YVGCMK--SGPVLARKGVKYYEPEYW--- 242 (359)
Q Consensus 169 ~nLt~Kt~~~~~wa~~~~~a~fvlKvDDDvfVn~~~L~~~L~~~~~~~~l-y~G~~~--~~pv~r~~~~K~~~p~~~--- 242 (359)
.+ ...-...+.++....+.++++..|.|+.+..+.|.+.+......+.. ..|... .++.......+-..-++.
T Consensus 120 ~~-~~gK~~al~~~l~~~~~d~V~~~DaD~~~~~d~l~~~~~~f~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 198 (439)
T COG1215 120 KK-NGGKAGALNNGLKRAKGDVVVILDADTVPEPDALRELVSPFEDPPVGAVVGTPRIRNRPDPSNLLGRIQAIEYLSAF 198 (439)
T ss_pred cc-CccchHHHHHHHhhcCCCEEEEEcCCCCCChhHHHHHHhhhcCCCeeEEeCCceeeecCChhhhcchhcchhhhhhH
Confidence 11 12224456667665679999999999999999999999887544433 333321 110000000000000000
Q ss_pred ----cccCCCCccccccCCCeeeeCHHHHHHHHHhccccCCCCcchHHHHHHHhcCC--CeEecCC
Q 018257 243 ----KFGEIGNKYFRHATGQLYALSKDLATYISINQHLLHKYANEDVSLGSWFIGLD--VEHVDDR 302 (359)
Q Consensus 243 ----~f~~p~~~Yp~y~~G~gYvlS~dla~~i~~~~~~l~~~~~EDV~vG~~l~~l~--v~~~~~~ 302 (359)
... ........+.|++.++.+++++.+- ......--||..++..+...| +..+++.
T Consensus 199 ~~~~~~~-~~~g~~~~~~G~~~~~rr~aL~~~g---~~~~~~i~ED~~lt~~l~~~G~~~~~~~~~ 260 (439)
T COG1215 199 YFRLRAA-SKGGLISFLSGSSSAFRRSALEEVG---GWLEDTITEDADLTLRLHLRGYRVVYVPEA 260 (439)
T ss_pred HHhhhhh-hhcCCeEEEcceeeeEEHHHHHHhC---CCCCCceeccHHHHHHHHHCCCeEEEeecc
Confidence 000 1123567799999999999998887 222333469999999996554 5555554
No 38
>cd04195 GT2_AmsE_like GT2_AmsE_like is involved in exopolysaccharide amylovora biosynthesis. AmsE is a glycosyltransferase involved in exopolysaccharide amylovora biosynthesis in Erwinia amylovora. Amylovara is one of the three exopolysaccharide produced by E. amylovora. Amylovara-deficient mutants are non-pathogenic. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=73.37 E-value=61 Score=28.11 Aligned_cols=114 Identities=13% Similarity=0.093 Sum_probs=59.9
Q ss_pred HHHHHhcCCceEEEEeccceeeeHHHHHHHHhhcCCCC--CeeEEeccc--CcccccCCCccccCc---c-ccccCCCCc
Q 018257 179 FATAVSMWDAEFYIKVDDDVHVNLATLGMTLAAHRTKP--RVYVGCMKS--GPVLARKGVKYYEPE---Y-WKFGEIGNK 250 (359)
Q Consensus 179 ~~wa~~~~~a~fvlKvDDDvfVn~~~L~~~L~~~~~~~--~ly~G~~~~--~pv~r~~~~K~~~p~---~-~~f~~p~~~ 250 (359)
+..+....+.+|++..|+|.++..+.|...+......+ .++.|.+.. .... ....+. .|. . ..+... .
T Consensus 72 ~N~g~~~a~gd~i~~lD~Dd~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~--~ 147 (201)
T cd04195 72 LNEGLKHCTYDWVARMDTDDISLPDRFEKQLDFIEKNPEIDIVGGGVLEFDSDGN-DIGKRR-LPTSHDDILKFARR--R 147 (201)
T ss_pred HHHHHHhcCCCEEEEeCCccccCcHHHHHHHHHHHhCCCeEEEcccEEEECCCCC-eecccc-CCCCHHHHHHHhcc--C
Confidence 44444445789999999999999988888887653333 344444321 1100 000010 111 0 011000 0
Q ss_pred cccccCCCeeeeCHHHHHHHHHhccccCCCCcchHHHHHHHh--cCCCeEecC
Q 018257 251 YFRHATGQLYALSKDLATYISINQHLLHKYANEDVSLGSWFI--GLDVEHVDD 301 (359)
Q Consensus 251 Yp~y~~G~gYvlS~dla~~i~~~~~~l~~~~~EDV~vG~~l~--~l~v~~~~~ 301 (359)
- + ..|++.++.+.++..+---. .....||..+...+. |..+.++++
T Consensus 148 ~-~-~~~~~~~~rr~~~~~~g~~~---~~~~~eD~~~~~r~~~~g~~~~~~~~ 195 (201)
T cd04195 148 S-P-FNHPTVMFRKSKVLAVGGYQ---DLPLVEDYALWARMLANGARFANLPE 195 (201)
T ss_pred C-C-CCChHHhhhHHHHHHcCCcC---CCCCchHHHHHHHHHHcCCceecccH
Confidence 1 1 24556677777766542211 124689999988875 444555443
No 39
>cd02526 GT2_RfbF_like RfbF is a putative dTDP-rhamnosyl transferase. Shigella flexneri RfbF protein is a putative dTDP-rhamnosyl transferase. dTDP rhamnosyl transferases of Shigella flexneri add rhamnose sugars to N-acetyl-glucosamine in the O-antigen tetrasaccharide repeat. Lipopolysaccharide O antigens are important virulence determinants for many bacteria. The variations of sugar composition, the sequence of the sugars and the linkages in the O antigen provide structural diversity of the O antigen.
Probab=73.16 E-value=69 Score=28.61 Aligned_cols=118 Identities=11% Similarity=-0.058 Sum_probs=60.9
Q ss_pred HHHHHHHHhcCCceEEEEeccceeeeHHHHHHHH---hhcCCCCCe-eEEecccCcccccCCCccccCcc-----ccccC
Q 018257 176 KTYFATAVSMWDAEFYIKVDDDVHVNLATLGMTL---AAHRTKPRV-YVGCMKSGPVLARKGVKYYEPEY-----WKFGE 246 (359)
Q Consensus 176 ~~~~~wa~~~~~a~fvlKvDDDvfVn~~~L~~~L---~~~~~~~~l-y~G~~~~~pv~r~~~~K~~~p~~-----~~f~~ 246 (359)
-.+++.+.. .+++|++..|+|+.+.++.|..++ ......+.+ .+|..............+..... ....
T Consensus 65 N~g~~~a~~-~~~d~v~~lD~D~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 142 (237)
T cd02526 65 NIGIKAALE-NGADYVLLFDQDSVPPPDMVEKLLAYKILSDKNSNIGAVGPRIIDRRTGENSPGVRKSGYKLRIQKEGE- 142 (237)
T ss_pred hHHHHHHHh-CCCCEEEEECCCCCcCHhHHHHHHHHHHhhccCCCeEEEeeeEEcCCCCeeccceeccCccceeccccc-
Confidence 345555543 278999999999999998888885 323233332 22332110000000000000000 0000
Q ss_pred CCCccccccCCCeeeeCHHHHHHHHHhccccCCCCcchHHHHHHHhcCCC
Q 018257 247 IGNKYFRHATGQLYALSKDLATYISINQHLLHKYANEDVSLGSWFIGLDV 296 (359)
Q Consensus 247 p~~~Yp~y~~G~gYvlS~dla~~i~~~~~~l~~~~~EDV~vG~~l~~l~v 296 (359)
....-..++.|++.++++++...+---...+ .+..||+.++.-+...|.
T Consensus 143 ~~~~~~~~~~~~~~~~rr~~~~~~ggfd~~~-~~~~eD~d~~~r~~~~G~ 191 (237)
T cd02526 143 EGLKEVDFLITSGSLISLEALEKVGGFDEDL-FIDYVDTEWCLRARSKGY 191 (237)
T ss_pred CCceEeeeeeccceEEcHHHHHHhCCCCHHH-cCccchHHHHHHHHHcCC
Confidence 0011123456788899999888874322222 134689999888865553
No 40
>COG1216 Predicted glycosyltransferases [General function prediction only]
Probab=72.56 E-value=26 Score=33.71 Aligned_cols=138 Identities=13% Similarity=0.010 Sum_probs=76.0
Q ss_pred cCCEEEecccccCcchhHHHHHHHHHHHhcCCceEEEEeccceeeeHHHHHHHHhhcCCCCCe-eEEecc---cCccc--
Q 018257 156 HGDFLRLEHIEGYLELSAKTKTYFATAVSMWDAEFYIKVDDDVHVNLATLGMTLAAHRTKPRV-YVGCMK---SGPVL-- 229 (359)
Q Consensus 156 ~~Dil~~df~DsY~nLt~Kt~~~~~wa~~~~~a~fvlKvDDDvfVn~~~L~~~L~~~~~~~~l-y~G~~~---~~pv~-- 229 (359)
+.++..+...++.-= ..=.-.+++.|....+. |++-.++|+.+..+.|.++|+.....+.. ..|... .++..
T Consensus 55 ~~~v~~i~~~~NlG~-agg~n~g~~~a~~~~~~-~~l~LN~D~~~~~~~l~~ll~~~~~~~~~~~~~~~i~~~~~~~~~~ 132 (305)
T COG1216 55 FPNVRLIENGENLGF-AGGFNRGIKYALAKGDD-YVLLLNPDTVVEPDLLEELLKAAEEDPAAGVVGPLIRNYDESLYID 132 (305)
T ss_pred CCcEEEEEcCCCccc-hhhhhHHHHHHhcCCCc-EEEEEcCCeeeChhHHHHHHHHHHhCCCCeEeeeeEecCCCCcchh
Confidence 677777654443320 11111455666542222 99999999999999999999887544433 333321 11110
Q ss_pred -ccC-----CCcc-ccCccccccC--CCCccccccCCCeeeeCHHHHHHHHHhccccCCCCcchHHHHHHHhcCCC
Q 018257 230 -ARK-----GVKY-YEPEYWKFGE--IGNKYFRHATGQLYALSKDLATYISINQHLLHKYANEDVSLGSWFIGLDV 296 (359)
Q Consensus 230 -r~~-----~~K~-~~p~~~~f~~--p~~~Yp~y~~G~gYvlS~dla~~i~~~~~~l~~~~~EDV~vG~~l~~l~v 296 (359)
+.. ...| ..+......+ +.....++++|++.++++++.+.+---.. --.+..||+-++.=+..+|.
T Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~li~~~~~~~vG~~de-~~F~y~eD~D~~~R~~~~G~ 207 (305)
T COG1216 133 RRGGESDGLTGGWRASPLLEIAPDLSSYLEVVASLSGACLLIRREAFEKVGGFDE-RFFIYYEDVDLCLRARKAGY 207 (305)
T ss_pred eeccccccccccceecccccccccccchhhhhhhcceeeeEEcHHHHHHhCCCCc-ccceeehHHHHHHHHHHcCC
Confidence 100 0111 1111100000 00112224789999999999999876222 22347999999988876663
No 41
>PF03071 GNT-I: GNT-I family; InterPro: IPR004139 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase (GNT-I, GLCNAC-T I) 2.4.1.101 from EC transfers N-acetyl-D-glucosamine from UDP to high-mannose glycoprotein N-oligosaccharide. This is an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. The enzyme is an integral membrane protein localized to the Golgi apparatus, and is probably distributed in all tissues. The catalytic domain is located at the C terminus []. These proteins are members of the glycosyl transferase family 13 (GH13 from CAZY); GO: 0003827 alpha-1,3-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity, 0006487 protein N-linked glycosylation, 0000139 Golgi membrane; PDB: 2APC_A 2AM4_A 1FO9_A 2AM3_A 1FOA_A 2AM5_A 1FO8_A.
Probab=71.72 E-value=39 Score=34.91 Aligned_cols=86 Identities=14% Similarity=0.176 Sum_probs=44.3
Q ss_pred HHHHHHHHh----cCCceEEEEeccceeeeHHHHHHHHhhc---CCCCCeeEEecccCcccccCCCcccc----Cccccc
Q 018257 176 KTYFATAVS----MWDAEFYIKVDDDVHVNLATLGMTLAAH---RTKPRVYVGCMKSGPVLARKGVKYYE----PEYWKF 244 (359)
Q Consensus 176 ~~~~~wa~~----~~~a~fvlKvDDDvfVn~~~L~~~L~~~---~~~~~ly~G~~~~~pv~r~~~~K~~~----p~~~~f 244 (359)
-.=++||.. ..+++.++-+.||.-|-++-+.-+.... ...+.+|+-.-.+. .+...++ |..+|.
T Consensus 176 A~HYk~aL~~vF~~~~~~~vIIlEDDL~isPDFf~Yf~~~~~ll~~D~sl~ciSawNd-----nG~~~~~~~~~~~~lyR 250 (434)
T PF03071_consen 176 ARHYKWALSQVFNKFKYSSVIILEDDLEISPDFFEYFSATLPLLENDPSLWCISAWND-----NGKEHFVDDSRPSLLYR 250 (434)
T ss_dssp HHHHHHHHHHHHHTS--SEEEEEETTEEE-TTHHHHHHHHHHHHHH-TTEEEEES--T-----T-BGGGS-TT-TT-EEE
T ss_pred HHHHHHHHHHHHHhcCCceEEEEecCcccCccHHHHHHHHHHHHhcCCCeEEEEcccc-----CCccccccCCCccceEe
Confidence 334455543 3578899999999999887665554443 24566664332211 1111111 333442
Q ss_pred cCCCCccccccCCCeeeeCHHHHHHHHHh
Q 018257 245 GEIGNKYFRHATGQLYALSKDLATYISIN 273 (359)
Q Consensus 245 ~~p~~~Yp~y~~G~gYvlS~dla~~i~~~ 273 (359)
. .|..|-|++|++++-..|...
T Consensus 251 s-------dffpglGWml~r~~w~el~~~ 272 (434)
T PF03071_consen 251 S-------DFFPGLGWMLTRELWDELEPK 272 (434)
T ss_dssp E-------SS---SSEEEEHHHHHHHGGG
T ss_pred c-------ccCCchHHHhhHHHHHhhccc
Confidence 1 245789999999998876543
No 42
>PRK14583 hmsR N-glycosyltransferase; Provisional
Probab=69.07 E-value=1.4e+02 Score=30.44 Aligned_cols=156 Identities=13% Similarity=0.137 Sum_probs=85.1
Q ss_pred ceEEEEEeccCCCCCchhHHHHHHHHhhcCCEEEecccccCcchhHHHHHHHHHHHhcCCceEEEEeccceeeeHHHHHH
Q 018257 128 GIIIRFVIGHSATSGGILDKAIDAEEKMHGDFLRLEHIEGYLELSAKTKTYFATAVSMWDAEFYIKVDDDVHVNLATLGM 207 (359)
Q Consensus 128 ~i~v~FvlG~s~~~~~~~~~~I~~E~~~~~Dil~~df~DsY~nLt~Kt~~~~~wa~~~~~a~fvlKvDDDvfVn~~~L~~ 207 (359)
...++++...+. +...+.+++..+++..+...... .|.. |. ..++.+....+.+|++-.|.|..+..+.|..
T Consensus 104 ~~eIivVdDgs~---D~t~~~~~~~~~~~~~v~vv~~~---~n~G-ka-~AlN~gl~~a~~d~iv~lDAD~~~~~d~L~~ 175 (444)
T PRK14583 104 NIEVIAINDGSS---DDTAQVLDALLAEDPRLRVIHLA---HNQG-KA-IALRMGAAAARSEYLVCIDGDALLDKNAVPY 175 (444)
T ss_pred CeEEEEEECCCC---ccHHHHHHHHHHhCCCEEEEEeC---CCCC-HH-HHHHHHHHhCCCCEEEEECCCCCcCHHHHHH
Confidence 466666655443 23334455545566655443322 2322 43 3455555556899999999999999999988
Q ss_pred HHhhcCCCCCeeEEecccCcccccCC---CccccCcc-----------ccccCCCCccccccCCCeeeeCHHHHHHHHHh
Q 018257 208 TLAAHRTKPRVYVGCMKSGPVLARKG---VKYYEPEY-----------WKFGEIGNKYFRHATGQLYALSKDLATYISIN 273 (359)
Q Consensus 208 ~L~~~~~~~~ly~G~~~~~pv~r~~~---~K~~~p~~-----------~~f~~p~~~Yp~y~~G~gYvlS~dla~~i~~~ 273 (359)
.++.....++ +|.+.+.+..++.. .+....++ ..+ +. +..++|.+.++.+++++.+---
T Consensus 176 lv~~~~~~~~--~g~v~g~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~---g~--~~~~sG~~~~~rr~al~~vGg~ 248 (444)
T PRK14583 176 LVAPLIANPR--TGAVTGNPRIRTRSTLIGRVQVGEFSSIIGLIKRTQRVY---GQ--VFTVSGVVAAFRRRALADVGYW 248 (444)
T ss_pred HHHHHHhCCC--eEEEEccceecCCCcchhhHHHHHHHHHHHHHHHHHHHh---CC--ceEecCceeEEEHHHHHHcCCC
Confidence 8876533333 23333222222111 11111110 011 11 1235788899999988776321
Q ss_pred ccccCCCCcchHHHHHHHhcCC--CeEecC
Q 018257 274 QHLLHKYANEDVSLGSWFIGLD--VEHVDD 301 (359)
Q Consensus 274 ~~~l~~~~~EDV~vG~~l~~l~--v~~~~~ 301 (359)
. +..-.||..+|.-+...| +...++
T Consensus 249 ~---~~~i~ED~dl~~rl~~~G~~i~~~p~ 275 (444)
T PRK14583 249 S---PDMITEDIDISWKLQLKHWSVFFEPR 275 (444)
T ss_pred C---CCcccccHHHHHHHHHcCCeEEEeec
Confidence 1 223479999998886555 444443
No 43
>TIGR03111 glyc2_xrt_Gpos1 putative glycosyltransferase TIGR03111. Members of this protein family probable glycosyltransferases of family 2, whose genes are near those for Gram-positive proteins (TIGR03110) related to the proposed exosortase (TIGR02602).
Probab=68.44 E-value=1.4e+02 Score=30.39 Aligned_cols=126 Identities=10% Similarity=0.110 Sum_probs=66.0
Q ss_pred HHHHHHhcCCceEEEEeccceeeeHHHHHHHHhhcCCCCCee--EEecccCc-ccccCCC--ccccCcc--------ccc
Q 018257 178 YFATAVSMWDAEFYIKVDDDVHVNLATLGMTLAAHRTKPRVY--VGCMKSGP-VLARKGV--KYYEPEY--------WKF 244 (359)
Q Consensus 178 ~~~wa~~~~~a~fvlKvDDDvfVn~~~L~~~L~~~~~~~~ly--~G~~~~~p-v~r~~~~--K~~~p~~--------~~f 244 (359)
++.++.+..+.+|++..|+|..+..+.|...+......+.+- .|.+...+ ....... .++.... +..
T Consensus 122 AlN~gl~~s~g~~v~~~DaD~~~~~d~L~~l~~~f~~~~~v~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~l~ 201 (439)
T TIGR03111 122 ALNAAIYNSIGKYIIHIDSDGKLHKDAIKNMVTRFENNPDIHAMTGVILTDKELIEKTKGRFLKLIRRCEYFEYAQAFLA 201 (439)
T ss_pred HHHHHHHHccCCEEEEECCCCCcChHHHHHHHHHHHhCCCeEEEEeEEecCchhhhhhcchhhhHhHHhHHHHHHHHHHh
Confidence 455666656789999999999999999998887764344432 24332211 0000000 0111110 000
Q ss_pred cC---CCCccccccCCCeeeeCHHHHHHHHHhccccCCCCcchHHHHHHHh---cCCCeEecCCCccc
Q 018257 245 GE---IGNKYFRHATGQLYALSKDLATYISINQHLLHKYANEDVSLGSWFI---GLDVEHVDDRRLCC 306 (359)
Q Consensus 245 ~~---p~~~Yp~y~~G~gYvlS~dla~~i~~~~~~l~~~~~EDV~vG~~l~---~l~v~~~~~~~f~~ 306 (359)
+. ....-+..++|++.++.++++..+-- .-...-.||..++.=+. +-.+....+..+..
T Consensus 202 ~r~~~s~~~~~~~~sGa~~~~Rr~~l~~vgg---f~~~~i~ED~~l~~rl~~~~g~kv~~~~~a~~~~ 266 (439)
T TIGR03111 202 GRNFESQVNSLFTLSGAFSAFRRETILKTQL---YNSETVGEDTDMTFQIRELLDGKVYLCENAIFYV 266 (439)
T ss_pred hhHHHHhcCCeEEEccHHHhhhHHHHHHhCC---CCCCCcCccHHHHHHHHHhcCCeEEECCCCEEEE
Confidence 00 00011223678888888888776422 11122389999986553 33344444544444
No 44
>cd04184 GT2_RfbC_Mx_like Myxococcus xanthus RfbC like proteins are required for O-antigen biosynthesis. The rfbC gene encodes a predicted protein of 1,276 amino acids, which is required for O-antigen biosynthesis in Myxococcus xanthus. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=67.79 E-value=81 Score=27.28 Aligned_cols=111 Identities=14% Similarity=0.116 Sum_probs=59.5
Q ss_pred HHHHHHhcCCceEEEEeccceeeeHHHHHHHHhhcC--CCCCeeEEeccc---CcccccCCCccccCccccccCCCCccc
Q 018257 178 YFATAVSMWDAEFYIKVDDDVHVNLATLGMTLAAHR--TKPRVYVGCMKS---GPVLARKGVKYYEPEYWKFGEIGNKYF 252 (359)
Q Consensus 178 ~~~wa~~~~~a~fvlKvDDDvfVn~~~L~~~L~~~~--~~~~ly~G~~~~---~pv~r~~~~K~~~p~~~~f~~p~~~Yp 252 (359)
.+.++.+....+|++..|+|..+..+.|...++... +.-.+..|.... ..... ..++.+. |. ....+.
T Consensus 74 a~n~g~~~a~~d~i~~ld~D~~~~~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~---~~~~~~~-~~---~~~~~~ 146 (202)
T cd04184 74 ATNSALELATGEFVALLDHDDELAPHALYEVVKALNEHPDADLIYSDEDKIDEGGKRS---EPFFKPD-WS---PDLLLS 146 (202)
T ss_pred HHHHHHHhhcCCEEEEECCCCcCChHHHHHHHHHHHhCCCCCEEEccHHhccCCCCEe---ccccCCC-CC---HHHhhh
Confidence 344444555789999999999999998888887762 222333332210 01000 0111111 11 000111
Q ss_pred cccCCCeeeeCHHHHHHHHHhccccCCCCcchHHHHHHHhcCCCe
Q 018257 253 RHATGQLYALSKDLATYISINQHLLHKYANEDVSLGSWFIGLDVE 297 (359)
Q Consensus 253 ~y~~G~gYvlS~dla~~i~~~~~~l~~~~~EDV~vG~~l~~l~v~ 297 (359)
.-+.|++-+++++++..+---... ....||.-++.-+...|.+
T Consensus 147 ~~~~~~~~~~~r~~~~~iggf~~~--~~~~eD~~l~~rl~~~g~~ 189 (202)
T cd04184 147 QNYIGHLLVYRRSLVRQVGGFREG--FEGAQDYDLVLRVSEHTDR 189 (202)
T ss_pred cCCccceEeEEHHHHHHhCCCCcC--cccchhHHHHHHHHhccce
Confidence 113455567888888776422111 2356999888877665544
No 45
>PRK10714 undecaprenyl phosphate 4-deoxy-4-formamido-L-arabinose transferase; Provisional
Probab=65.49 E-value=1.4e+02 Score=29.18 Aligned_cols=135 Identities=10% Similarity=0.038 Sum_probs=70.2
Q ss_pred CceEEEEEeccCCCCCchhHHHHHHHHhhcCC-EEEecccccCcchhHHHHHHHHHHHhcCCceEEEEeccceeeeHHHH
Q 018257 127 KGIIIRFVIGHSATSGGILDKAIDAEEKMHGD-FLRLEHIEGYLELSAKTKTYFATAVSMWDAEFYIKVDDDVHVNLATL 205 (359)
Q Consensus 127 ~~i~v~FvlG~s~~~~~~~~~~I~~E~~~~~D-il~~df~DsY~nLt~Kt~~~~~wa~~~~~a~fvlKvDDDvfVn~~~L 205 (359)
..+.+++|-..|.+ .+. ..+.+-.+.+++ ++......++. |.- ++..+.+..+.+|++-+|.|.-.+++.+
T Consensus 37 ~~~EIIvVDDgS~D--~T~-~il~~~~~~~~~~v~~i~~~~n~G----~~~-A~~~G~~~A~gd~vv~~DaD~q~~p~~i 108 (325)
T PRK10714 37 KEYEILLIDDGSSD--NSA-EMLVEAAQAPDSHIVAILLNRNYG----QHS-AIMAGFSHVTGDLIITLDADLQNPPEEI 108 (325)
T ss_pred CCEEEEEEeCCCCC--cHH-HHHHHHHhhcCCcEEEEEeCCCCC----HHH-HHHHHHHhCCCCEEEEECCCCCCCHHHH
Confidence 35678888876653 232 223332333444 44443333332 211 2222333347899999999999999999
Q ss_pred HHHHhhcCCCCCeeEEeccc--CcccccCCCccccCccccccCCCCccccccCCCeeeeCHHHHHHHHH
Q 018257 206 GMTLAAHRTKPRVYVGCMKS--GPVLARKGVKYYEPEYWKFGEIGNKYFRHATGQLYALSKDLATYISI 272 (359)
Q Consensus 206 ~~~L~~~~~~~~ly~G~~~~--~pv~r~~~~K~~~p~~~~f~~p~~~Yp~y~~G~gYvlS~dla~~i~~ 272 (359)
..+++......++..|.... .+..+.-.++.+----..+ -+..++.+.+| .-++++++++.+..
T Consensus 109 ~~l~~~~~~~~DvV~~~r~~~~~~~~r~~~s~~~~~l~~~~--~g~~~~d~~~g-fr~~~r~~~~~l~~ 174 (325)
T PRK10714 109 PRLVAKADEGYDVVGTVRQNRQDSWFRKTASKMINRLIQRT--TGKAMGDYGCM-LRAYRRHIVDAMLH 174 (325)
T ss_pred HHHHHHHHhhCCEEEEEEcCCCCcHHHHHHHHHHHHHHHHH--cCCCCCCCCcC-eEEEcHHHHHHHHH
Confidence 88888764333444444321 2232222222211100001 12234444333 34899999999864
No 46
>cd02514 GT13_GLCNAC-TI GT13_GLCNAC-TI is involved in an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. Alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase (GLCNAC-T I , GNT-I) transfers N-acetyl-D-glucosamine from UDP to high-mannose glycoprotein N-oligosaccharide, an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. The enzyme is an integral membrane protein localized to the Golgi apparatus. The catalytic domain is located at the C-terminus. These proteins are members of the glycosy transferase family 13.
Probab=64.84 E-value=24 Score=35.21 Aligned_cols=82 Identities=16% Similarity=0.304 Sum_probs=52.0
Q ss_pred HHHHHHHhcCCceEEEEeccceeeeHH---HHHHHHhhcCCCCCeeEEecccCcccccCCCccc---cCccccccCCCCc
Q 018257 177 TYFATAVSMWDAEFYIKVDDDVHVNLA---TLGMTLAAHRTKPRVYVGCMKSGPVLARKGVKYY---EPEYWKFGEIGNK 250 (359)
Q Consensus 177 ~~~~wa~~~~~a~fvlKvDDDvfVn~~---~L~~~L~~~~~~~~ly~G~~~~~pv~r~~~~K~~---~p~~~~f~~p~~~ 250 (359)
.++.|+....++++++-+|||..+.++ -+...|..+...++++ |+.+-. +.+.+.. .|...|+.
T Consensus 87 ~aln~vF~~~~~~~vIILEDDl~~sPdFf~yf~~~l~~y~~D~~v~--~ISa~N---dnG~~~~~~~~~~~lyrs----- 156 (334)
T cd02514 87 WALTQTFNLFGYSFVIILEDDLDIAPDFFSYFQATLPLLEEDPSLW--CISAWN---DNGKEHFVDDTPSLLYRT----- 156 (334)
T ss_pred HHHHHHHHhcCCCEEEEECCCCccCHhHHHHHHHHHHHHhcCCCEE--EEEeec---cCCcccccCCCcceEEEe-----
Confidence 467777664589999999999999998 4455665555566655 332100 1111111 13333321
Q ss_pred cccccCCCeeeeCHHHHHHH
Q 018257 251 YFRHATGQLYALSKDLATYI 270 (359)
Q Consensus 251 Yp~y~~G~gYvlS~dla~~i 270 (359)
.|+.|.|.++.+++-..+
T Consensus 157 --~ff~glGWml~r~~W~e~ 174 (334)
T cd02514 157 --DFFPGLGWMLTRKLWKEL 174 (334)
T ss_pred --cCCCchHHHHHHHHHHHh
Confidence 467899999999998887
No 47
>cd06442 DPM1_like DPM1_like represents putative enzymes similar to eukaryotic DPM1. Proteins similar to eukaryotic DPM1, including enzymes from bacteria and archaea; DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi,
Probab=62.88 E-value=1.1e+02 Score=26.97 Aligned_cols=85 Identities=9% Similarity=0.022 Sum_probs=47.8
Q ss_pred CCceEEEEeccceeeeHHHHHHHHhh-cCCCCCeeEEecc-cCcccccCCCcc--ccC-ccccccCC-CCccccccCCCe
Q 018257 186 WDAEFYIKVDDDVHVNLATLGMTLAA-HRTKPRVYVGCMK-SGPVLARKGVKY--YEP-EYWKFGEI-GNKYFRHATGQL 259 (359)
Q Consensus 186 ~~a~fvlKvDDDvfVn~~~L~~~L~~-~~~~~~ly~G~~~-~~pv~r~~~~K~--~~p-~~~~f~~p-~~~Yp~y~~G~g 259 (359)
...+|++.+|+|..+.++.|..++.. ..+...+..|... ..... .....+ +.+ ....+.-. ...-.+.++|++
T Consensus 77 a~gd~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (224)
T cd06442 77 ARGDVIVVMDADLSHPPEYIPELLEAQLEGGADLVIGSRYVEGGGV-EGWGLKRKLISRGANLLARLLLGRKVSDPTSGF 155 (224)
T ss_pred cCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCEEEEeeeecCCcc-CCCcHHHHHHHHHHHHHHHHHcCCCCCCCCCcc
Confidence 34599999999999999988888886 3455566666532 11110 000000 000 00000000 001123577888
Q ss_pred eeeCHHHHHHHH
Q 018257 260 YALSKDLATYIS 271 (359)
Q Consensus 260 YvlS~dla~~i~ 271 (359)
.+++++++..+-
T Consensus 156 ~~~~r~~~~~ig 167 (224)
T cd06442 156 RAYRREVLEKLI 167 (224)
T ss_pred chhhHHHHHHHh
Confidence 899999999987
No 48
>PHA01631 hypothetical protein
Probab=61.94 E-value=20 Score=32.27 Aligned_cols=92 Identities=14% Similarity=0.196 Sum_probs=53.9
Q ss_pred cCCEEEecccccCcchhHHHHHHHHHHHh---cCCceEEEEeccceeeeHHHHHHHHhhcCCCCCeeEEecccCcccccC
Q 018257 156 HGDFLRLEHIEGYLELSAKTKTYFATAVS---MWDAEFYIKVDDDVHVNLATLGMTLAAHRTKPRVYVGCMKSGPVLARK 232 (359)
Q Consensus 156 ~~Dil~~df~DsY~nLt~Kt~~~~~wa~~---~~~a~fvlKvDDDvfVn~~~L~~~L~~~~~~~~ly~G~~~~~pv~r~~ 232 (359)
+.+|+...--..++. +....++..+.+ .-+-+.++-+|.|++|+.-. .. .+...++.=|.. .+
T Consensus 39 ~~~Ii~~~t~~e~Rr--~RIAk~Ll~Iln~~s~i~DDi~~iIDSDV~ipn~~--~~----~~~~~v~t~CiP---A~--- 104 (176)
T PHA01631 39 QEKIIWIMTNTEIRW--LRIAKQLLTIVNFAKNIEDDIIAIIDSDLIIPNLR--EI----IPNERVFTPCYW---LY--- 104 (176)
T ss_pred CCceEEecccchhHH--HHHHHHHHHHHHhhccCCccEEEEeccceEecCcc--cc----ccCCCccceeee---ee---
Confidence 455555543222222 334444455533 35678888999999987542 11 233344544431 11
Q ss_pred CCccccCccccccCCCCccccccCCCeeeeCHHHHHHHHHh
Q 018257 233 GVKYYEPEYWKFGEIGNKYFRHATGQLYALSKDLATYISIN 273 (359)
Q Consensus 233 ~~K~~~p~~~~f~~p~~~Yp~y~~G~gYvlS~dla~~i~~~ 273 (359)
.| |.+.+-+||.|.-|++.+..+..+...
T Consensus 105 -~k-----------p~~~v~~FC~sTNf~~pr~~l~~l~~v 133 (176)
T PHA01631 105 -YD-----------WANEIRPFCSGTNYIFRKSLLPYLEYT 133 (176)
T ss_pred -ec-----------CCCcEEEEEccccEEeeHHHhHHHHHH
Confidence 01 234556789999999999999988764
No 49
>PF10111 Glyco_tranf_2_2: Glycosyltransferase like family 2; InterPro: IPR019290 This conserved domain is found in a set of prokaryotic proteins including putative glucosyltransferases, which are involved in bacterial capsule biosynthesis [, ].
Probab=61.15 E-value=1.5e+02 Score=28.08 Aligned_cols=165 Identities=13% Similarity=0.083 Sum_probs=90.0
Q ss_pred cCceEEEEEeccCCCCCchhHHHHHHHHhhcCCE-E-EecccccCcchhHHHHHHHHHHHhcCCceEEEEeccceeeeHH
Q 018257 126 AKGIIIRFVIGHSATSGGILDKAIDAEEKMHGDF-L-RLEHIEGYLELSAKTKTYFATAVSMWDAEFYIKVDDDVHVNLA 203 (359)
Q Consensus 126 ~~~i~v~FvlG~s~~~~~~~~~~I~~E~~~~~Di-l-~~df~DsY~nLt~Kt~~~~~wa~~~~~a~fvlKvDDDvfVn~~ 203 (359)
...+.+++|-+.+. ......|.+-.+.++-+ + ..+....+.+.+. +..-+.+....+|++..|.|+.+..+
T Consensus 32 ~~~~eiIvvd~~s~---~~~~~~l~~~~~~~~~~~~i~~~~~~~~f~~a~----arN~g~~~A~~d~l~flD~D~i~~~~ 104 (281)
T PF10111_consen 32 DPDFEIIVVDDGSS---DEFDEELKKLCEKNGFIRYIRHEDNGEPFSRAK----ARNIGAKYARGDYLIFLDADCIPSPD 104 (281)
T ss_pred CCCEEEEEEECCCc---hhHHHHHHHHHhccCceEEEEcCCCCCCcCHHH----HHHHHHHHcCCCEEEEEcCCeeeCHH
Confidence 35677777776654 23345566666666655 2 2222222223322 22334444589999999999999999
Q ss_pred HHHHHHh---hcCCCC-CeeEEe-cc-c--C--cccccCCCcccc--CccccccCCCCcc-ccccCCCeeeeCHHHHHHH
Q 018257 204 TLGMTLA---AHRTKP-RVYVGC-MK-S--G--PVLARKGVKYYE--PEYWKFGEIGNKY-FRHATGQLYALSKDLATYI 270 (359)
Q Consensus 204 ~L~~~L~---~~~~~~-~ly~G~-~~-~--~--pv~r~~~~K~~~--p~~~~f~~p~~~Y-p~y~~G~gYvlS~dla~~i 270 (359)
.|...+. .....+ .++++. .. . . .........|.. -+... ....+.+ .....|++.+++++.-..|
T Consensus 105 ~i~~~~~~~~~l~~~~~~~~~~p~~yl~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~s~~~~i~r~~f~~i 183 (281)
T PF10111_consen 105 FIEKLLNHVKKLDKNPNAFLVYPCLYLSEEGSEKFYSQFKNLWDHEFLESFI-SGKNSLWEFIAFASSCFLINREDFLEI 183 (281)
T ss_pred HHHHHHHHHHHHhcCCCceEEEeeeeccchhhHHHhhcchhcchHHHHHHHh-hccccccccccccceEEEEEHHHHHHh
Confidence 9999998 333222 333322 21 1 1 011000000100 00000 0001111 1223568999999998877
Q ss_pred HHhccccCCCCcchHHHHHHHhcCCCeE
Q 018257 271 SINQHLLHKYANEDVSLGSWFIGLDVEH 298 (359)
Q Consensus 271 ~~~~~~l~~~~~EDV~vG~~l~~l~v~~ 298 (359)
----.....+..||.-++.=|...+...
T Consensus 184 GGfDE~f~G~G~ED~D~~~RL~~~~~~~ 211 (281)
T PF10111_consen 184 GGFDERFRGWGYEDIDFGYRLKKAGYKF 211 (281)
T ss_pred CCCCccccCCCcchHHHHHHHHHcCCcE
Confidence 6655566667899999998887776554
No 50
>cd04191 Glucan_BSP_ModH Glucan_BSP_ModH catalyzes the elongation of beta-1,2 polyglucose chains of glucan. Periplasmic Glucan Biosynthesis protein ModH is a glucosyltransferase that catalyzes the elongation of beta-1,2 polyglucose chains of glucan, requiring a beta-glucoside as a primer and UDP-glucose as a substrate. Glucans are composed of 5 to 10 units of glucose forming a highly branched structure, where beta-1,2-linked glucose constitutes a linear backbone to which branches are attached by beta-1,6 linkages. In Escherichia coli, glucans are located in the periplasmic space, functioning as regulator of osmolarity. It is synthesized at a maximum when cells are grown in a medium with low osmolarity. It has been shown to span the cytoplasmic membrane.
Probab=60.88 E-value=1.5e+02 Score=27.97 Aligned_cols=121 Identities=12% Similarity=0.071 Sum_probs=67.6
Q ss_pred cchhHHHHHHHHHHHhc-CCceEEEEeccceeeeHHHHHHHHhhcCCCCCeeEEecccCcccccCCC---ccc-------
Q 018257 169 LELSAKTKTYFATAVSM-WDAEFYIKVDDDVHVNLATLGMTLAAHRTKPRVYVGCMKSGPVLARKGV---KYY------- 237 (359)
Q Consensus 169 ~nLt~Kt~~~~~wa~~~-~~a~fvlKvDDDvfVn~~~L~~~L~~~~~~~~ly~G~~~~~pv~r~~~~---K~~------- 237 (359)
.|.-.|+-..-...... .+.+|++-.|.|+.+..+.|...+......++ +|-+.......+..+ ++.
T Consensus 76 ~~~g~Kag~l~~~~~~~~~~~~~i~~~DaD~~~~p~~l~~~v~~~~~~~~--vg~vq~~~~~~n~~~~~~~~~~~~~~~~ 153 (254)
T cd04191 76 ENTGRKAGNIADFCRRWGSRYDYMVVLDADSLMSGDTIVRLVRRMEANPR--AGIIQTAPKLIGAETLFARLQQFANRLY 153 (254)
T ss_pred CCCCccHHHHHHHHHHhCCCCCEEEEEeCCCCCCHHHHHHHHHHHHhCCC--EEEEeCCceeECCCCHHHHHHHHHHHHH
Confidence 34444555444433332 57899999999999999999999887643343 233321110011111 110
Q ss_pred cC------ccccccCCCCccccccCCCeeeeCHHHHHHHHHhc-----ccc-CCCCcchHHHHHHHhcCCCe
Q 018257 238 EP------EYWKFGEIGNKYFRHATGQLYALSKDLATYISINQ-----HLL-HKYANEDVSLGSWFIGLDVE 297 (359)
Q Consensus 238 ~p------~~~~f~~p~~~Yp~y~~G~gYvlS~dla~~i~~~~-----~~l-~~~~~EDV~vG~~l~~l~v~ 297 (359)
.| ..|. ..-.+|.|...++.++.+..+..-. .-+ ...-.||..+|..+...|-+
T Consensus 154 ~~~~~~~~~~~~------~~~~~~~G~~~~~Rr~al~~~~~~~~i~g~g~~~~~~l~eD~~l~~~~~~~G~r 219 (254)
T cd04191 154 GPVFGRGLAAWQ------GGEGNYWGHNAIIRVAAFMEHCALPVLPGRPPFGGHILSHDFVEAALMRRAGWE 219 (254)
T ss_pred HHHHHHHHHHhc------CCccCccceEEEEEHHHHHHhcCCccccCCCCCCCCeecHHHHHHHHHHHcCCE
Confidence 00 0011 0113467999999999887753211 111 12357999999998765533
No 51
>cd02522 GT_2_like_a GT_2_like_a represents a glycosyltransferase family-2 subfamily with unknown function. Glycosyltransferase family 2 (GT-2) subfamily of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=60.03 E-value=54 Score=28.89 Aligned_cols=105 Identities=12% Similarity=0.030 Sum_probs=57.8
Q ss_pred HHHhcCCceEEEEeccceeeeHHHHHHHHhhcCCCCCeeEEecc----c-CcccccCCCccccCccccccCCCCcccccc
Q 018257 181 TAVSMWDAEFYIKVDDDVHVNLATLGMTLAAHRTKPRVYVGCMK----S-GPVLARKGVKYYEPEYWKFGEIGNKYFRHA 255 (359)
Q Consensus 181 wa~~~~~a~fvlKvDDDvfVn~~~L~~~L~~~~~~~~ly~G~~~----~-~pv~r~~~~K~~~p~~~~f~~p~~~Yp~y~ 255 (359)
-+......+|++.+|+|..+..+.|...+....... ..+|... . +...+....++..... ....+ .
T Consensus 66 ~g~~~a~~~~i~~~D~D~~~~~~~l~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~-~ 136 (221)
T cd02522 66 AGAAAARGDWLLFLHADTRLPPDWDAAIIETLRADG-AVAGAFRLRFDDPGPRLRLLELGANLRSR-------LFGLP-Y 136 (221)
T ss_pred HHHHhccCCEEEEEcCCCCCChhHHHHHHHHhhcCC-cEEEEEEeeecCCccchhhhhhcccceec-------ccCCC-c
Confidence 344444589999999999999888888766554333 3334421 1 1110000111111110 01111 2
Q ss_pred CCCeeeeCHHHHHHHHHhccccCCCCcchHHHHHHHhcCCCe
Q 018257 256 TGQLYALSKDLATYISINQHLLHKYANEDVSLGSWFIGLDVE 297 (359)
Q Consensus 256 ~G~gYvlS~dla~~i~~~~~~l~~~~~EDV~vG~~l~~l~v~ 297 (359)
++.+.++++++...+-.-... +..||.-++.=+...|-.
T Consensus 137 ~~~~~~~r~~~~~~~G~fd~~---~~~ED~d~~~r~~~~G~~ 175 (221)
T cd02522 137 GDQGLFIRRELFEELGGFPEL---PLMEDVELVRRLRRRGRP 175 (221)
T ss_pred CCceEEEEHHHHHHhCCCCcc---ccccHHHHHHHHHhCCCE
Confidence 456789999988776432222 268999888777666543
No 52
>cd04179 DPM_DPG-synthase_like DPM_DPG-synthase_like is a member of the Glycosyltransferase 2 superfamily. DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi, and animals, have no transmembrane region, suggesting the ex
Probab=58.97 E-value=1.1e+02 Score=25.88 Aligned_cols=132 Identities=10% Similarity=0.012 Sum_probs=69.8
Q ss_pred ceEEEEEeccCCCCCchhHHHHHHHHhhcCCEEEecccccCcchhHHHHHHHHHHHhcCCceEEEEeccceeeeHHHHHH
Q 018257 128 GIIIRFVIGHSATSGGILDKAIDAEEKMHGDFLRLEHIEGYLELSAKTKTYFATAVSMWDAEFYIKVDDDVHVNLATLGM 207 (359)
Q Consensus 128 ~i~v~FvlG~s~~~~~~~~~~I~~E~~~~~Dil~~df~DsY~nLt~Kt~~~~~wa~~~~~a~fvlKvDDDvfVn~~~L~~ 207 (359)
...++.+-..+. +.....+......+..+..+....... | -..+..+.++...+|++..|+|..+..+.|..
T Consensus 28 ~~eiivvd~~s~---d~~~~~~~~~~~~~~~~~~~~~~~n~G----~-~~a~n~g~~~a~gd~i~~lD~D~~~~~~~l~~ 99 (185)
T cd04179 28 DYEIIVVDDGST---DGTAEIARELAARVPRVRVIRLSRNFG----K-GAAVRAGFKAARGDIVVTMDADLQHPPEDIPK 99 (185)
T ss_pred CEEEEEEcCCCC---CChHHHHHHHHHhCCCeEEEEccCCCC----c-cHHHHHHHHHhcCCEEEEEeCCCCCCHHHHHH
Confidence 345555554443 233444555555666654444444332 1 13334444444559999999999999999888
Q ss_pred HHhh-cCCCCCeeEEecc--cC----cccccCCCccccCcc-ccccCCCCccccccCCCeeeeCHHHHHHHH
Q 018257 208 TLAA-HRTKPRVYVGCMK--SG----PVLARKGVKYYEPEY-WKFGEIGNKYFRHATGQLYALSKDLATYIS 271 (359)
Q Consensus 208 ~L~~-~~~~~~ly~G~~~--~~----pv~r~~~~K~~~p~~-~~f~~p~~~Yp~y~~G~gYvlS~dla~~i~ 271 (359)
++.. ......+..|... .+ +..+.- ..+..... ..+ ...-.....|+.+++++++++.+.
T Consensus 100 l~~~~~~~~~~~v~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~---~~~~~~~~~~~~~~~~r~~~~~i~ 167 (185)
T cd04179 100 LLEKLLEGGADVVIGSRFVRGGGAGMPLLRRL-GSRLFNFLIRLL---LGVRISDTQSGFRLFRREVLEALL 167 (185)
T ss_pred HHHHHhccCCcEEEEEeecCCCcccchHHHHH-HHHHHHHHHHHH---cCCCCcCCCCceeeeHHHHHHHHH
Confidence 8886 3444556666632 11 111000 00000000 000 011122356777899999999985
No 53
>TIGR01556 rhamnosyltran L-rhamnosyltransferase. Rhamnolipids are glycolipids containing mono- or di- L-rhamnose molecules. Rhamnolipid synthesis occurs by sequential glycosyltransferase reactions involving two distinct rhamnosyltransferase enzymes. In P.aeruginosa, the synthesis of mono-rhamnolipids is catalyzed by rhamnosyltransferase 1, and proceeds by a glycosyltransfer reaction catalyzed by rhamnosyltransferase 2 to yield di-rhamnolipids.
Probab=53.35 E-value=96 Score=28.98 Aligned_cols=115 Identities=7% Similarity=-0.034 Sum_probs=57.8
Q ss_pred HHHHHHhcCCceEEEEeccceeeeHHHHHHHHhhcCCCC-C-eeEEecc-c-CcccccC---CCccccCccccccCC-CC
Q 018257 178 YFATAVSMWDAEFYIKVDDDVHVNLATLGMTLAAHRTKP-R-VYVGCMK-S-GPVLARK---GVKYYEPEYWKFGEI-GN 249 (359)
Q Consensus 178 ~~~wa~~~~~a~fvlKvDDDvfVn~~~L~~~L~~~~~~~-~-ly~G~~~-~-~pv~r~~---~~K~~~p~~~~f~~p-~~ 249 (359)
++++|.+ .+++|++..|||+.+..+.|...++.....+ . ..+|... . ......+ ...+..+. ....++ ..
T Consensus 65 Gi~~a~~-~~~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 142 (281)
T TIGR01556 65 GLDASFR-RGVQGVLLLDQDSRPGNAFLAAQWKLLSAENGQACALGPRFFDRGTSRRLPAIHLDGLLLRQ-ISLDGLTTP 142 (281)
T ss_pred HHHHHHH-CCCCEEEEECCCCCCCHHHHHHHHHHHHhcCCceEEECCeEEcCCCcccCCceeecccceee-ecccccCCc
Confidence 5566654 3789999999999999888877776543222 2 2233211 1 0000000 00010000 000000 00
Q ss_pred ccccccCCCeeeeCHHHHHHHHHhccccCCCCcchHHHHHHHhcCC
Q 018257 250 KYFRHATGQLYALSKDLATYISINQHLLHKYANEDVSLGSWFIGLD 295 (359)
Q Consensus 250 ~Yp~y~~G~gYvlS~dla~~i~~~~~~l~~~~~EDV~vG~~l~~l~ 295 (359)
.-..++.++|.++++++++.+---...+ .+..||+-+..=+...|
T Consensus 143 ~~~~~~~~sg~li~~~~~~~iG~fde~~-fi~~~D~e~~~R~~~~G 187 (281)
T TIGR01556 143 QKTSFLISSGCLITREVYQRLGMMDEEL-FIDHVDTEWSLRAQNYG 187 (281)
T ss_pred eeccEEEcCcceeeHHHHHHhCCccHhh-cccchHHHHHHHHHHCC
Confidence 1112445666789999998874322222 23468887755554433
No 54
>cd04190 Chitin_synth_C C-terminal domain of Chitin Synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin. Chitin synthase, also called UDP-N-acetyl-D-glucosamine:chitin 4-beta-N-acetylglucosaminyltransferase, catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of GlcNAc residues formed by covalent beta-1,4 linkages. Chitin is an important component of the cell wall of fungi and bacteria and it is synthesized on the cytoplasmic surface of the cell membrane by membrane bound chitin synthases. Studies with fungi have revealed that most of them contain more than one chitin synthase gene. At least five subclasses of chitin synthases have been identified.
Probab=52.72 E-value=25 Score=32.49 Aligned_cols=111 Identities=16% Similarity=0.103 Sum_probs=60.5
Q ss_pred cCCceEEEEeccceeeeHHHHHHHHhhcCCCCCe--eEEeccc-Cc---cc-ccCCCccccCcc-ccccCCCCccccccC
Q 018257 185 MWDAEFYIKVDDDVHVNLATLGMTLAAHRTKPRV--YVGCMKS-GP---VL-ARKGVKYYEPEY-WKFGEIGNKYFRHAT 256 (359)
Q Consensus 185 ~~~a~fvlKvDDDvfVn~~~L~~~L~~~~~~~~l--y~G~~~~-~p---v~-r~~~~K~~~p~~-~~f~~p~~~Yp~y~~ 256 (359)
..+.+|++.+|.|+.+..+.|..++......+++ ..|.+.. ++ .+ +-..--|..... .......-.+...+.
T Consensus 71 ~a~~e~i~~~DaD~~~~~~~l~~l~~~~~~~p~vg~v~g~~~~~~~~~~~~~~~q~~ey~~~~~~~~~~~s~~g~~~~~~ 150 (244)
T cd04190 71 PDDPEFILLVDADTKFDPDSIVQLYKAMDKDPEIGGVCGEIHPMGKKQGPLVMYQVFEYAISHWLDKAFESVFGFVTCLP 150 (244)
T ss_pred cCCCCEEEEECCCCcCCHhHHHHHHHHHHhCCCEEEEEeeeEEcCCcchhHHHhHheehhhhhhhcccHHHcCCceEECC
Confidence 3589999999999999999988888776433443 2233321 10 00 000000000000 000001123455688
Q ss_pred CCeeeeCHHHHHHHHHhccc----------c-------CCCCcchHHHHHHHhcCC
Q 018257 257 GQLYALSKDLATYISINQHL----------L-------HKYANEDVSLGSWFIGLD 295 (359)
Q Consensus 257 G~gYvlS~dla~~i~~~~~~----------l-------~~~~~EDV~vG~~l~~l~ 295 (359)
|+++++.+++++.+...... + .....||..++..+...|
T Consensus 151 G~~~~~R~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ED~~l~~~l~~~G 206 (244)
T cd04190 151 GCFSMYRIEALKGDNGGKGPLLDYAYLTNTVDSLHKKNNLDLGEDRILCTLLLKAG 206 (244)
T ss_pred CceEEEEehhhcCCccccccchhhccccCcccchHHHHHHhHhcccceeHHHhccC
Confidence 99999999987765322110 0 112479999988885544
No 55
>cd06437 CESA_CaSu_A2 Cellulose synthase catalytic subunit A2 (CESA2) is a catalytic subunit or a catalytic subunit substitute of the cellulose synthase complex. Cellulose synthase (CESA) catalyzes the polymerization reaction of cellulose using UDP-glucose as the substrate. Cellulose is an aggregate of unbranched polymers of beta-1,4-linked glucose residues, which is an abundant polysaccharide produced by plants and in varying degrees by several other organisms including algae, bacteria, fungi, and even some animals. Genomes from higher plants harbor multiple CESA genes. There are ten in Arabidopsis. At least three different CESA proteins are required to form a functional complex. In Arabidopsis, CESA1, 3 and 6 and CESA4, 7 and 8, are required for cellulose biosynthesis during primary and secondary cell wall formation. CESA2 is very closely related to CESA6 and is viewed as a prime substitute for CESA6. They functionally compensate each other. The cesa2 and cesa6 double mutant plants we
Probab=52.44 E-value=1.7e+02 Score=26.11 Aligned_cols=118 Identities=15% Similarity=0.095 Sum_probs=59.8
Q ss_pred HHHHHhcCCceEEEEeccceeeeHHHHHHHHhhcCCCCCeeEEecccCcccccCCCcccc-----Cccccc-----cCCC
Q 018257 179 FATAVSMWDAEFYIKVDDDVHVNLATLGMTLAAHRTKPRVYVGCMKSGPVLARKGVKYYE-----PEYWKF-----GEIG 248 (359)
Q Consensus 179 ~~wa~~~~~a~fvlKvDDDvfVn~~~L~~~L~~~~~~~~ly~G~~~~~pv~r~~~~K~~~-----p~~~~f-----~~p~ 248 (359)
+..+.+..+.+|++.+|.|+.+..+.|...+... ..+. +|.+.+.....+....|.. +....+ +...
T Consensus 79 ~n~g~~~a~~~~i~~~DaD~~~~~~~l~~~~~~~-~~~~--v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (232)
T cd06437 79 LAEGMKVAKGEYVAIFDADFVPPPDFLQKTPPYF-ADPK--LGFVQTRWGHINANYSLLTRVQAMSLDYHFTIEQVARSS 155 (232)
T ss_pred HHHHHHhCCCCEEEEEcCCCCCChHHHHHhhhhh-cCCC--eEEEecceeeEcCCCchhhHhhhhhHHhhhhHhHhhHhh
Confidence 4455555589999999999999999988855443 2233 2333211111111111110 000000 0000
Q ss_pred CccccccCCCeeeeCHHHHHHHHHhccccCCCCcchHHHHHHHhcCC--CeEecCC
Q 018257 249 NKYFRHATGQLYALSKDLATYISINQHLLHKYANEDVSLGSWFIGLD--VEHVDDR 302 (359)
Q Consensus 249 ~~Yp~y~~G~gYvlS~dla~~i~~~~~~l~~~~~EDV~vG~~l~~l~--v~~~~~~ 302 (359)
......+.|++-++.++++..+---. .....||+.++.-+...| +..+++.
T Consensus 156 ~~~~~~~~g~~~~~rr~~~~~vgg~~---~~~~~ED~~l~~rl~~~G~~~~~~~~~ 208 (232)
T cd06437 156 TGLFFNFNGTAGVWRKECIEDAGGWN---HDTLTEDLDLSYRAQLKGWKFVYLDDV 208 (232)
T ss_pred cCCeEEeccchhhhhHHHHHHhCCCC---CCcchhhHHHHHHHHHCCCeEEEeccc
Confidence 11111235666677888877653111 123479999998886554 4444443
No 56
>cd04188 DPG_synthase DPG_synthase is involved in protein N-linked glycosylation. UDP-glucose:dolichyl-phosphate glucosyltransferase (DPG_synthase) is a transmembrane-bound enzyme of the endoplasmic reticulum involved in protein N-linked glycosylation. This enzyme catalyzes the transfer of glucose from UDP-glucose to dolichyl phosphate.
Probab=51.91 E-value=1.7e+02 Score=25.78 Aligned_cols=89 Identities=12% Similarity=0.050 Sum_probs=52.2
Q ss_pred CceEEEEEeccCCCCCchhHHHHHHHHhhcCCEEE-ecccccCcchhHHHHHHHHHHHhcCCceEEEEeccceeeeHHHH
Q 018257 127 KGIIIRFVIGHSATSGGILDKAIDAEEKMHGDFLR-LEHIEGYLELSAKTKTYFATAVSMWDAEFYIKVDDDVHVNLATL 205 (359)
Q Consensus 127 ~~i~v~FvlG~s~~~~~~~~~~I~~E~~~~~Dil~-~df~DsY~nLt~Kt~~~~~wa~~~~~a~fvlKvDDDvfVn~~~L 205 (359)
..+.++.|-+.|.+ .....+.+..+.++..++ +.... |.- +. .++..+.+....+|++-+|+|..+.++.|
T Consensus 29 ~~~eiivvdd~S~D---~t~~~~~~~~~~~~~~i~~i~~~~---n~G-~~-~a~~~g~~~a~gd~i~~ld~D~~~~~~~l 100 (211)
T cd04188 29 FSYEIIVVDDGSKD---GTAEVARKLARKNPALIRVLTLPK---NRG-KG-GAVRAGMLAARGDYILFADADLATPFEEL 100 (211)
T ss_pred CCEEEEEEeCCCCC---chHHHHHHHHHhCCCcEEEEEccc---CCC-cH-HHHHHHHHHhcCCEEEEEeCCCCCCHHHH
Confidence 34667777666652 233445555556665422 22222 211 21 22233333345699999999999999999
Q ss_pred HHHHhhc-CCCCCeeEEec
Q 018257 206 GMTLAAH-RTKPRVYVGCM 223 (359)
Q Consensus 206 ~~~L~~~-~~~~~ly~G~~ 223 (359)
..++... .....+.+|..
T Consensus 101 ~~l~~~~~~~~~~~v~g~r 119 (211)
T cd04188 101 EKLEEALKTSGYDIAIGSR 119 (211)
T ss_pred HHHHHHHhccCCcEEEEEe
Confidence 9888873 34456677764
No 57
>PLN02726 dolichyl-phosphate beta-D-mannosyltransferase
Probab=51.47 E-value=1.9e+02 Score=26.31 Aligned_cols=157 Identities=14% Similarity=0.088 Sum_probs=78.6
Q ss_pred ceEEEEEeccCCCCCchhHHHHHHHHhhcCC--EEEecccccCcchhHHHHHHHHHHHhcCCceEEEEeccceeeeHHHH
Q 018257 128 GIIIRFVIGHSATSGGILDKAIDAEEKMHGD--FLRLEHIEGYLELSAKTKTYFATAVSMWDAEFYIKVDDDVHVNLATL 205 (359)
Q Consensus 128 ~i~v~FvlG~s~~~~~~~~~~I~~E~~~~~D--il~~df~DsY~nLt~Kt~~~~~wa~~~~~a~fvlKvDDDvfVn~~~L 205 (359)
.+.+++|-..|.+ .....+.+-.++|++ +....... |.. | -..+..+......+|++.+|+|..+.++.|
T Consensus 40 ~~eiivvDdgS~D---~t~~i~~~~~~~~~~~~v~~~~~~~---n~G-~-~~a~n~g~~~a~g~~i~~lD~D~~~~~~~l 111 (243)
T PLN02726 40 DFEIIVVDDGSPD---GTQDVVKQLQKVYGEDRILLRPRPG---KLG-L-GTAYIHGLKHASGDFVVIMDADLSHHPKYL 111 (243)
T ss_pred CeEEEEEeCCCCC---CHHHHHHHHHHhcCCCcEEEEecCC---CCC-H-HHHHHHHHHHcCCCEEEEEcCCCCCCHHHH
Confidence 5677777766652 223334443345543 22222221 221 1 123344444457899999999999999998
Q ss_pred HHHHhhcC-CCCCeeEEecc--cCc-----ccccCCCcc--ccCccccccCCCCccccccCCCeeeeCHHHHHHHHHhcc
Q 018257 206 GMTLAAHR-TKPRVYVGCMK--SGP-----VLARKGVKY--YEPEYWKFGEIGNKYFRHATGQLYALSKDLATYISINQH 275 (359)
Q Consensus 206 ~~~L~~~~-~~~~ly~G~~~--~~p-----v~r~~~~K~--~~p~~~~f~~p~~~Yp~y~~G~gYvlS~dla~~i~~~~~ 275 (359)
..++.... ....+..|... .+. ..+.-.++. +.- .+.++ ... ....|+..+++++++..+.....
T Consensus 112 ~~l~~~~~~~~~~~v~g~r~~~~~~~~~~~~~r~~~~~~~~~~~-~~~~~---~~~-~d~~g~~~~~rr~~~~~i~~~~~ 186 (243)
T PLN02726 112 PSFIKKQRETGADIVTGTRYVKGGGVHGWDLRRKLTSRGANVLA-QTLLW---PGV-SDLTGSFRLYKRSALEDLVSSVV 186 (243)
T ss_pred HHHHHHHHhcCCcEEEEccccCCCCcCCccHHHHHHHHHHHHHH-HHHhC---CCC-CcCCCcccceeHHHHHHHHhhcc
Confidence 88887653 33456666532 110 000000000 000 01111 111 23577888999999999965322
Q ss_pred ccCCCCcchHHHHHHH--hcCCCeEe
Q 018257 276 LLHKYANEDVSLGSWF--IGLDVEHV 299 (359)
Q Consensus 276 ~l~~~~~EDV~vG~~l--~~l~v~~~ 299 (359)
. ..| ..|+-+..-+ .|..+..+
T Consensus 187 ~-~~~-~~~~el~~~~~~~g~~i~~v 210 (243)
T PLN02726 187 S-KGY-VFQMEIIVRASRKGYRIEEV 210 (243)
T ss_pred C-CCc-EEehHHHHHHHHcCCcEEEe
Confidence 2 122 3355554444 34445444
No 58
>KOG2547 consensus Ceramide glucosyltransferase [Lipid transport and metabolism; Cell wall/membrane/envelope biogenesis]
Probab=45.64 E-value=21 Score=36.18 Aligned_cols=41 Identities=7% Similarity=0.083 Sum_probs=29.4
Q ss_pred CceEEEEeccceeeeHHHHHHHHhhcCCCCCeeEEecccCccc
Q 018257 187 DAEFYIKVDDDVHVNLATLGMTLAAHRTKPRVYVGCMKSGPVL 229 (359)
Q Consensus 187 ~a~fvlKvDDDvfVn~~~L~~~L~~~~~~~~ly~G~~~~~pv~ 229 (359)
+++|++..|||+|+.++.+.++-.+....+ =+|-+.++|-.
T Consensus 170 ~ydlvlisDsgI~m~pdtildm~t~M~she--kmalvtq~py~ 210 (431)
T KOG2547|consen 170 KYDLVLISDSGIFMKPDTILDMATTMMSHE--KMALVTQTPYC 210 (431)
T ss_pred cCCEEEEecCCeeecCchHHHHHHhhhccc--ceeeecCCcee
Confidence 567999999999999999999887754322 23555444433
No 59
>cd00761 Glyco_tranf_GTA_type Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold. Glycosyltransferases (GTs) are enzymes that synthesize oligosaccharides, polysaccharides, and glycoconjugates by transferring the sugar moiety from an activated nucleotide-sugar donor to an acceptor molecule, which may be a growing oligosaccharide, a lipid, or a protein. Based on the stereochemistry of the donor and acceptor molecules, GTs are classified as either retaining or inverting enzymes. To date, all GT structures adopt one of two possible folds, termed GT-A fold and GT-B fold. This hierarchy includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. The majority of the proteins in this superfamily are Glycosyltransferase family 2 (GT-2) proteins. But it als
Probab=44.03 E-value=1.6e+02 Score=23.13 Aligned_cols=33 Identities=15% Similarity=0.064 Sum_probs=24.9
Q ss_pred HHHHHhcCCceEEEEeccceeeeHHHHHHHHhh
Q 018257 179 FATAVSMWDAEFYIKVDDDVHVNLATLGMTLAA 211 (359)
Q Consensus 179 ~~wa~~~~~a~fvlKvDDDvfVn~~~L~~~L~~ 211 (359)
+..+....+.+|++-+|+|..+..+.+...+..
T Consensus 69 ~~~~~~~~~~d~v~~~d~D~~~~~~~~~~~~~~ 101 (156)
T cd00761 69 RNAGLKAARGEYILFLDADDLLLPDWLERLVAE 101 (156)
T ss_pred HHHHHHHhcCCEEEEECCCCccCccHHHHHHHH
Confidence 344444347999999999999999888887443
No 60
>TIGR03030 CelA cellulose synthase catalytic subunit (UDP-forming). Cellulose synthase catalyzes the beta-1,4 polymerization of glucose residues in the formation of cellulose. In bacteria, the substrate is UDP-glucose. The synthase consists of two subunits (or domains in the frequent cases where it is encoded as a single polypeptide), the catalytic domain modelled here and the regulatory domain (pfam03170). The regulatory domain binds the allosteric activator cyclic di-GMP. The protein is membrane-associated and probably assembles into multimers such that the individual cellulose strands can self-assemble into multi-strand fibrils.
Probab=38.90 E-value=5.6e+02 Score=28.09 Aligned_cols=133 Identities=19% Similarity=0.125 Sum_probs=72.3
Q ss_pred chhHHHHHHHHHHHhcCCceEEEEeccceeeeHHHHHHHHhhcCCCCCe-eEEecc---c-CcccccCCCccccC-cc-c
Q 018257 170 ELSAKTKTYFATAVSMWDAEFYIKVDDDVHVNLATLGMTLAAHRTKPRV-YVGCMK---S-GPVLARKGVKYYEP-EY-W 242 (359)
Q Consensus 170 nLt~Kt~~~~~wa~~~~~a~fvlKvDDDvfVn~~~L~~~L~~~~~~~~l-y~G~~~---~-~pv~r~~~~K~~~p-~~-~ 242 (359)
|.-.|.- .+..+.+..+.+|++..|.|+.+..+.|...+......+++ .++... + .+..++-......| +. .
T Consensus 212 n~~~KAg-nLN~al~~a~gd~Il~lDAD~v~~pd~L~~~v~~f~~dp~v~~Vqtp~~f~~p~~~~~nl~~~~~~~~e~~~ 290 (713)
T TIGR03030 212 NVHAKAG-NINNALKHTDGELILIFDADHVPTRDFLQRTVGWFVEDPKLFLVQTPHFFVSPDPIERNLGTFRRMPNENEL 290 (713)
T ss_pred CCCCChH-HHHHHHHhcCCCEEEEECCCCCcChhHHHHHHHHHHhCCCEEEEeCCeeccCCCHHhhhhHHHHHhhhHHHH
Confidence 3334533 35666666788999999999999999988887765333443 122111 1 11111100000011 00 0
Q ss_pred cccC--CCC--ccccccCCCeeeeCHHHHHHHHHhccccCCCCcchHHHHHHHhcCC--CeEecCCCccc
Q 018257 243 KFGE--IGN--KYFRHATGQLYALSKDLATYISINQHLLHKYANEDVSLGSWFIGLD--VEHVDDRRLCC 306 (359)
Q Consensus 243 ~f~~--p~~--~Yp~y~~G~gYvlS~dla~~i~~~~~~l~~~~~EDV~vG~~l~~l~--v~~~~~~~f~~ 306 (359)
+++. ++. .-..++.|++.++.+++...+---. ...-.||..+|.-+...| +..+++.....
T Consensus 291 f~~~i~~g~~~~~~~~~~Gs~~~iRR~al~~iGGf~---~~~vtED~~l~~rL~~~G~~~~y~~~~~~~g 357 (713)
T TIGR03030 291 FYGLIQDGNDFWNAAFFCGSAAVLRREALDEIGGIA---GETVTEDAETALKLHRRGWNSAYLDRPLIAG 357 (713)
T ss_pred HHHHHHHHHhhhCCeeecCceeEEEHHHHHHcCCCC---CCCcCcHHHHHHHHHHcCCeEEEeccccccc
Confidence 0000 000 0123567999999999988763211 112379999999986655 44555554443
No 61
>PRK05454 glucosyltransferase MdoH; Provisional
Probab=33.45 E-value=4.8e+02 Score=28.70 Aligned_cols=198 Identities=13% Similarity=0.093 Sum_probs=101.2
Q ss_pred CCceeEEEEEeCCCCCHHH-HHHHHHHhhhcchhhhhhhccCceEEEEEeccCCCCCchhH---HHHHHHHhhcC---CE
Q 018257 87 KRKYFMVIGINTAFSSRKR-RDSVRATWMPQGEKRKMLEEAKGIIIRFVIGHSATSGGILD---KAIDAEEKMHG---DF 159 (359)
Q Consensus 87 ~~~~~lli~V~S~~~~~~r-R~aIR~TW~~~~~~l~~l~~~~~i~v~FvlG~s~~~~~~~~---~~I~~E~~~~~---Di 159 (359)
...+.+.|+|.+.-...++ +..|+.+..+-.. ......+.+ |++..+.+++ ... .++.+=.++|+ .|
T Consensus 121 ~~~~~VaVliP~yNEd~~~v~~~L~a~~~Sl~~----~~~~~~~e~-~vLdD~~d~~-~~~~e~~~~~~L~~~~~~~~~i 194 (691)
T PRK05454 121 PPEARTAILMPIYNEDPARVFAGLRAMYESLAA----TGHGAHFDF-FILSDTRDPD-IAAAEEAAWLELRAELGGEGRI 194 (691)
T ss_pred CCCCceEEEEeCCCCChHHHHHHHHHHHHHHHh----cCCCCCEEE-EEEECCCChh-HHHHHHHHHHHHHHhcCCCCcE
Confidence 3445677777766544433 4678888765321 001123444 8887655321 111 11222233443 23
Q ss_pred EEecccccCcchhHHHHHHHHHHHh-cCCceEEEEeccceeeeHHHHHHHHhhcCCCCCeeEEecccCcccccCCC---c
Q 018257 160 LRLEHIEGYLELSAKTKTYFATAVS-MWDAEFYIKVDDDVHVNLATLGMTLAAHRTKPRVYVGCMKSGPVLARKGV---K 235 (359)
Q Consensus 160 l~~df~DsY~nLt~Kt~~~~~wa~~-~~~a~fvlKvDDDvfVn~~~L~~~L~~~~~~~~ly~G~~~~~pv~r~~~~---K 235 (359)
... .--.|.-.|.-..-.+... ..+++|++-.|-|+.+..+.|.+++......++ +|-+...+...+..+ +
T Consensus 195 ~yr---~R~~n~~~KaGNl~~~~~~~~~~~eyivvLDADs~m~~d~L~~lv~~m~~dP~--vGlVQt~~~~~n~~slfaR 269 (691)
T PRK05454 195 FYR---RRRRNVGRKAGNIADFCRRWGGAYDYMVVLDADSLMSGDTLVRLVRLMEANPR--AGLIQTLPVAVGADTLFAR 269 (691)
T ss_pred EEE---ECCcCCCccHHHHHHHHHhcCCCcCEEEEEcCCCCCCHHHHHHHHHHHhhCcC--EEEEeCCccCcCCCCHHHH
Confidence 322 2223434566555455443 257899999999999999999999876543343 344432222111111 1
Q ss_pred c-------ccC------ccccccCCCCccccccCCCeeeeCHHHHHHHHH-----h-ccccCCCCcchHHHHHHHhcCC-
Q 018257 236 Y-------YEP------EYWKFGEIGNKYFRHATGQLYALSKDLATYISI-----N-QHLLHKYANEDVSLGSWFIGLD- 295 (359)
Q Consensus 236 ~-------~~p------~~~~f~~p~~~Yp~y~~G~gYvlS~dla~~i~~-----~-~~~l~~~~~EDV~vG~~l~~l~- 295 (359)
+ |-| ..|..+ . -...|...|+.++....+.- . ...-...--||...|..+...|
T Consensus 270 ~qqf~~~~y~~~~~~G~~~w~~~---~---g~f~G~naIiR~~af~~~~glp~L~g~~p~~~~~LseD~~~a~~l~~~Gy 343 (691)
T PRK05454 270 LQQFATRVYGPLFAAGLAWWQGG---E---GNYWGHNAIIRVKAFAEHCGLPPLPGRGPFGGHILSHDFVEAALMRRAGW 343 (691)
T ss_pred HHHHHHHHHHHHHHhhhhhhccC---c---cccccceEEEEHHHHHHhcCCccccccCCCCCCcccHHHHHHHHHHHCCC
Confidence 1 000 001100 0 01346777888887665431 0 0111123478999999996554
Q ss_pred -CeEecC
Q 018257 296 -VEHVDD 301 (359)
Q Consensus 296 -v~~~~~ 301 (359)
|..+++
T Consensus 344 rV~~~pd 350 (691)
T PRK05454 344 GVWLAPD 350 (691)
T ss_pred EEEEcCc
Confidence 556655
No 62
>cd06438 EpsO_like EpsO protein participates in the methanolan synthesis. The Methylobacillus sp EpsO protein is predicted to participate in the methanolan synthesis. Methanolan is an exopolysaccharide (EPS), composed of glucose, mannose and galactose. A 21 genes cluster was predicted to participate in the methanolan synthesis. Gene disruption analysis revealed that EpsO is one of the glycosyltransferase enzymes involved in the synthesis of repeating sugar units onto the lipid carrier.
Probab=32.17 E-value=3.3e+02 Score=23.36 Aligned_cols=89 Identities=13% Similarity=0.052 Sum_probs=52.0
Q ss_pred HHHHHHHh-cCCceEEEEeccceeeeHHHHHHHHhhcCCCCCeeEEecccCcccccCCCccccC----cc----c--ccc
Q 018257 177 TYFATAVS-MWDAEFYIKVDDDVHVNLATLGMTLAAHRTKPRVYVGCMKSGPVLARKGVKYYEP----EY----W--KFG 245 (359)
Q Consensus 177 ~~~~wa~~-~~~a~fvlKvDDDvfVn~~~L~~~L~~~~~~~~ly~G~~~~~pv~r~~~~K~~~p----~~----~--~f~ 245 (359)
.++.++.. -.+.+|++-+|.|+.+.++.|..++........+..|+....+ +...|.-. .+ + ..+
T Consensus 70 ~g~~~a~~~~~~~d~v~~~DaD~~~~p~~l~~l~~~~~~~~~~v~g~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~ 145 (183)
T cd06438 70 FGFRHLLNLADDPDAVVVFDADNLVDPNALEELNARFAAGARVVQAYYNSKN----PDDSWITRLYAFAFLVFNRLRPLG 145 (183)
T ss_pred HHHHHHHhcCCCCCEEEEEcCCCCCChhHHHHHHHHHhhCCCeeEEEEeeeC----CccCHHHHHHHHHHHHHHHHHHHH
Confidence 34555432 2468999999999999998888888777554556666643111 11111100 00 0 000
Q ss_pred CCCCccccccCCCeeeeCHHHHHH
Q 018257 246 EIGNKYFRHATGQLYALSKDLATY 269 (359)
Q Consensus 246 ~p~~~Yp~y~~G~gYvlS~dla~~ 269 (359)
...-.-+.++.|+++++++++++.
T Consensus 146 ~~~~~~~~~~~G~~~~~rr~~l~~ 169 (183)
T cd06438 146 RSNLGLSCQLGGTGMCFPWAVLRQ 169 (183)
T ss_pred HHHcCCCeeecCchhhhHHHHHHh
Confidence 000112335789999999999887
No 63
>COG4092 Predicted glycosyltransferase involved in capsule biosynthesis [Cell envelope biogenesis, outer membrane]
Probab=31.90 E-value=2.1e+02 Score=28.02 Aligned_cols=80 Identities=10% Similarity=0.079 Sum_probs=58.9
Q ss_pred cCceEEEEEeccCCCCCchhHHHHHHHHhhcCCEEEecccc--cCcchhHHHHHHHHHHHhcCCceEEEEeccceeeeHH
Q 018257 126 AKGIIIRFVIGHSATSGGILDKAIDAEEKMHGDFLRLEHIE--GYLELSAKTKTYFATAVSMWDAEFYIKVDDDVHVNLA 203 (359)
Q Consensus 126 ~~~i~v~FvlG~s~~~~~~~~~~I~~E~~~~~Dil~~df~D--sY~nLt~Kt~~~~~wa~~~~~a~fvlKvDDDvfVn~~ 203 (359)
..++.++|+-|.+ ..++.|..=.....-++-+++.+ .+..-+.--..+..|+.+..+.++++..|-|+|...+
T Consensus 36 ~~~~~vi~~~~~~-----~~d~~i~~~i~~~~~~~yl~~~s~~~F~s~~~c~n~ga~Ysh~~~~Sn~vlFlDvDc~~S~d 110 (346)
T COG4092 36 SDITMVICLRAHE-----VMDRLIRSYIDPMPRVLYLDFGSPEPFASETICANNGADYSHEKCESNLVLFLDVDCFGSSD 110 (346)
T ss_pred cccEEEEEEecch-----hHHHHHHHHhccccceEEEecCCCccccchhhhhhccchhhhccccccEEEEEeccccccHH
Confidence 4566777777754 45677777777777777777543 4444344445677888875689999999999999999
Q ss_pred HHHHHHh
Q 018257 204 TLGMTLA 210 (359)
Q Consensus 204 ~L~~~L~ 210 (359)
+....|.
T Consensus 111 nF~k~l~ 117 (346)
T COG4092 111 NFAKMLS 117 (346)
T ss_pred HHHHHHH
Confidence 9999883
No 64
>PF09258 Glyco_transf_64: Glycosyl transferase family 64 domain; InterPro: IPR015338 Members of this entry catalyse the transfer reaction of N-acetylglucosamine and N-acetylgalactosamine from the respective UDP-sugars to the non-reducing end of [glucuronic acid]beta 1-3[galactose]beta 1-O-naphthalenemethanol, an acceptor substrate analogue of the natural common linker of various glycosylaminoglycans. They are also required for the biosynthesis of heparan-sulphate []. ; GO: 0016758 transferase activity, transferring hexosyl groups, 0031227 intrinsic to endoplasmic reticulum membrane; PDB: 1ON6_B 1OMZ_B 1OMX_B 1ON8_B.
Probab=31.05 E-value=59 Score=30.77 Aligned_cols=101 Identities=13% Similarity=0.134 Sum_probs=53.7
Q ss_pred CCceEEEEeccceeeeHHHHHHHHhhcCCCCCeeEEecccCcccccCCCccccCccccccCCCCccccccCCCeeeeCHH
Q 018257 186 WDAEFYIKVDDDVHVNLATLGMTLAAHRTKPRVYVGCMKSGPVLARKGVKYYEPEYWKFGEIGNKYFRHATGQLYALSKD 265 (359)
Q Consensus 186 ~~a~fvlKvDDDvfVn~~~L~~~L~~~~~~~~ly~G~~~~~pv~r~~~~K~~~p~~~~f~~p~~~Yp~y~~G~gYvlS~d 265 (359)
...+-|+-+|||+.++.+.|.......+..+.-.+|.....-.....+++|-.... ..+.|- -...++-++.+.
T Consensus 74 i~T~AVl~~DDDv~~~~~~l~faF~~W~~~pdrlVGf~~R~h~~~~~~~~~~Y~~~-----~~~~yS-mvLt~aaf~h~~ 147 (247)
T PF09258_consen 74 IETDAVLSLDDDVMLSCDELEFAFQVWREFPDRLVGFPPRSHSWDPSSGRWKYTSE-----WSNEYS-MVLTGAAFYHRY 147 (247)
T ss_dssp --SSEEEEEETTEEE-HHHHHHHHHHHCCSTTSEEES-EEEEEEE-ETTEEEEE-S-----SS--BS-EE-TTEEEEETH
T ss_pred cCcceEEEecCCcccCHHHHHHHHHHHHhChhheeCCccceeecCCCccccccccC-----CCCcch-hhhhhhHhhcch
Confidence 46788999999999999999988888876676678876311111112344422111 122332 234555566666
Q ss_pred HHHHHHHhcc-----cc-CCCCcchHHHHHHHh
Q 018257 266 LATYISINQH-----LL-HKYANEDVSLGSWFI 292 (359)
Q Consensus 266 la~~i~~~~~-----~l-~~~~~EDV~vG~~l~ 292 (359)
.......... .+ ....=||..+-..+.
T Consensus 148 yl~~Y~~~~p~~~r~~Vd~~~NCEDI~mNflvs 180 (247)
T PF09258_consen 148 YLELYTHWLPASIREYVDEHFNCEDIAMNFLVS 180 (247)
T ss_dssp HHHHHHT-S-HHHHHHHHHHTS-HHHHHHHHHH
T ss_pred HHHHHhcCcHHHHHHHHhccCCHHHHHHHHHHH
Confidence 6554432111 11 123569998877764
No 65
>PF04666 Glyco_transf_54: N-Acetylglucosaminyltransferase-IV (GnT-IV) conserved region; InterPro: IPR006759 The complex-type of oligosaccharides are synthesised through elongation by glycosyltransferases after trimming of the precursor oligosaccharides transferred to proteins in the endoplasmic reticulum. N-Acetylglucosaminyltransferases (GnTs) take part in the formation of branches in the biosynthesis of complex-type sugar chains. In vertebrates, six GnTs, designated as GnT-I to -VI, which catalyse the transfer of GlcNAc to the core mannose residues of Asn-linked sugar chains, have been identified. GnT-IV (2.4.1.145 from EC) catalyzes the transfer of GlcNAc from UDP-GlcNAc to the GlcNAc1-2Man1-3 arm of core oligosaccharide [Gn2(22)core oligosaccharide] and forms a GlcNAc1-4(GlcNAc1-2)Man1-3 structure on the core oligosaccharide (Gn3(2,4,2)core oligosaccharide). In some members the conserved region occupies all but the very N-terminal, where there is a signal sequence on all members. For other members the conserved region does not occupy the entire protein but is still to the N-terminal end of the protein [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0016020 membrane
Probab=26.94 E-value=3.5e+02 Score=26.47 Aligned_cols=120 Identities=18% Similarity=0.190 Sum_probs=56.8
Q ss_pred CCceeEEEEEeCCCCCHHHHHHHHHHhhhcchhhhhhhccCceEEEEEeccCCCC-CchhHHHHHHHHhhc---CCEEEe
Q 018257 87 KRKYFMVIGINTAFSSRKRRDSVRATWMPQGEKRKMLEEAKGIIIRFVIGHSATS-GGILDKAIDAEEKMH---GDFLRL 162 (359)
Q Consensus 87 ~~~~~lli~V~S~~~~~~rR~aIR~TW~~~~~~l~~l~~~~~i~v~FvlG~s~~~-~~~~~~~I~~E~~~~---~Dil~~ 162 (359)
+....|.|||.|.... +-..+..|=++--..+..-| ...+.++-+++.+... .......|..+-..+ |=+..+
T Consensus 49 ~~~~~L~IGIpTV~R~--~~sYL~~TL~SLl~~ls~~E-r~~i~IvVllAd~Dp~~~~~~~~~i~~~f~~~i~sG~l~VI 125 (297)
T PF04666_consen 49 RTGKKLCIGIPTVKRE--KESYLLDTLASLLDGLSPEE-RKDIVIVVLLADTDPDYHPSVAQNISTRFADHIESGLLEVI 125 (297)
T ss_pred CCCCeEEEEecccccC--CCchHHHHHHHHHHhCCHHH-hcCeEEEEEecCCChhhhHHHHHHHHHHhHHHHHhCceEEE
Confidence 4445599999997542 33556666666543322222 2345555555655421 122222333221111 223333
Q ss_pred ccccc-Ccchh--------------HHHHHHHHHHH--h-c-CCceEEEEeccceeeeHHHHHHHH
Q 018257 163 EHIEG-YLELS--------------AKTKTYFATAV--S-M-WDAEFYIKVDDDVHVNLATLGMTL 209 (359)
Q Consensus 163 df~Ds-Y~nLt--------------~Kt~~~~~wa~--~-~-~~a~fvlKvDDDvfVn~~~L~~~L 209 (359)
.-..+ |..+. .+++.-+.|+. . | ..++||+-..|||.....-+..+.
T Consensus 126 ~~p~~~Yp~l~~l~~~~~d~~~rv~wrsKq~lDya~Lm~y~~~~~~YyL~LEDDVia~~~f~~~i~ 191 (297)
T PF04666_consen 126 SPPPSYYPDLDNLKRNFGDSEERVRWRSKQNLDYAFLMNYCQNLGDYYLQLEDDVIAAPGFLSRIK 191 (297)
T ss_pred ecccccCCChhhhhhcccChhhhhhHHHhhcccHHHHHHHHHhcCCeEEEecCCeEechhHHHHHH
Confidence 22222 21111 12222222221 1 2 368899999999998876544443
No 66
>cd06427 CESA_like_2 CESA_like_2 is a member of the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, Glucan Biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis prot
Probab=25.81 E-value=4.9e+02 Score=23.40 Aligned_cols=121 Identities=13% Similarity=0.062 Sum_probs=65.5
Q ss_pred HHHHHHhcCCceEEEEeccceeeeHHHHHHHHhhcCCC-CCe-eEEe-cccCcccccCCCccccCcccc-cc-----CCC
Q 018257 178 YFATAVSMWDAEFYIKVDDDVHVNLATLGMTLAAHRTK-PRV-YVGC-MKSGPVLARKGVKYYEPEYWK-FG-----EIG 248 (359)
Q Consensus 178 ~~~wa~~~~~a~fvlKvDDDvfVn~~~L~~~L~~~~~~-~~l-y~G~-~~~~pv~r~~~~K~~~p~~~~-f~-----~p~ 248 (359)
.+..+.+....+|++.+|+|+.+..+.|...+...... +.+ ++|. +...........+.+..+.+. |+ -..
T Consensus 75 a~n~g~~~a~gd~i~~~DaD~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (241)
T cd06427 75 ACNYALAFARGEYVVIYDAEDAPDPDQLKKAVAAFARLDDKLACVQAPLNYYNARENWLTRMFALEYAAWFDYLLPGLAR 154 (241)
T ss_pred HHHHHHHhcCCCEEEEEcCCCCCChHHHHHHHHHHHhcCCCEEEEeCceEeeCCCccHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44555555577999999999999999999988876432 332 2222 111000000000111000000 00 000
Q ss_pred CccccccCCCeeeeCHHHHHHHHHhccccCCCCcchHHHHHHHhcCC--CeEecC
Q 018257 249 NKYFRHATGQLYALSKDLATYISINQHLLHKYANEDVSLGSWFIGLD--VEHVDD 301 (359)
Q Consensus 249 ~~Yp~y~~G~gYvlS~dla~~i~~~~~~l~~~~~EDV~vG~~l~~l~--v~~~~~ 301 (359)
...+..++|++.++++++++.+---.. ....||..++.=+...| +..++.
T Consensus 155 ~~~~~~~~g~~~~~rr~~~~~vgg~~~---~~~~eD~~l~~rl~~~G~r~~~~~~ 206 (241)
T cd06427 155 LGLPIPLGGTSNHFRTDVLRELGGWDP---FNVTEDADLGLRLARAGYRTGVLNS 206 (241)
T ss_pred cCCeeecCCchHHhhHHHHHHcCCCCc---ccchhhHHHHHHHHHCCceEEEecc
Confidence 123334678889999999888743211 23479999988775554 444433
No 67
>PLN03181 glycosyltransferase; Provisional
Probab=25.21 E-value=4.6e+02 Score=27.21 Aligned_cols=93 Identities=22% Similarity=0.253 Sum_probs=54.2
Q ss_pred HHHHHHHhhhcchhhhhhhccCceEEEEEeccCCCC-----Cc-hhHHHHH---HHHhhcC-CEEEec-ccc-cCcchhH
Q 018257 106 RDSVRATWMPQGEKRKMLEEAKGIIIRFVIGHSATS-----GG-ILDKAID---AEEKMHG-DFLRLE-HIE-GYLELSA 173 (359)
Q Consensus 106 R~aIR~TW~~~~~~l~~l~~~~~i~v~FvlG~s~~~-----~~-~~~~~I~---~E~~~~~-Dil~~d-f~D-sY~nLt~ 173 (359)
=++-|+.|.+.-.. ...+..-+|+.|.|..+.+ ++ -+.+.++ .=.+.|| ++...+ ..+ .+..-..
T Consensus 108 wD~kR~~Wl~~~p~---~~~~~~prVViVT~Sdp~~C~~~~gD~~LlriikNR~dYArrHGY~lf~~~a~Ld~~~p~~Wa 184 (453)
T PLN03181 108 WDEKRAEWLKLHPS---FAPGAEERVVMVTGSQPTPCKNPIGDHLLLRFFKNKVDYCRIHGYDIFYNNALLHPKMNSYWA 184 (453)
T ss_pred HHHHHHHHHHhCCC---CCCCCCCCEEEEECCCCCCCCCcccHHHHHHHHHHHHHHHHHhCCcEEEeccccCccCchhhh
Confidence 35667788865321 1223345567777765221 22 2222222 2345666 333333 223 5666677
Q ss_pred HHHHHHHHHHhcCCceEEEEeccceeee
Q 018257 174 KTKTYFATAVSMWDAEFYIKVDDDVHVN 201 (359)
Q Consensus 174 Kt~~~~~wa~~~~~a~fvlKvDDDvfVn 201 (359)
|...+-.-+.+.|+++|+.=+|.|+++-
T Consensus 185 KipalRaAM~a~PeAEWfWWLDsDALIM 212 (453)
T PLN03181 185 KLPVVRAAMLAHPEAEWIWWVDSDAVFT 212 (453)
T ss_pred HHHHHHHHHHHCCCceEEEEecCCceee
Confidence 8777777667799999999999999873
No 68
>PF03490 Varsurf_PPLC: Variant-surface-glycoprotein phospholipase C; InterPro: IPR003633 Variant-surface-glycoprotein phospholipase C, by hydrolysis of the attached glycolipid, releases soluble variant surface glycoprotein containing phosphoinositol from the cell wall after lysis. It catalyses the conversion of variant-surface-glycoprotein 1,2 didecanoyl-SN-phosphatidylinositol and water to 1,2-didecanoylglycerol and the soluble variant-surface-glycoprotein. It also cleaves similar membrane anchors on some mammalian proteins.; GO: 0047396 glycosylphosphatidylinositol diacylglycerol-lyase activity, 0006650 glycerophospholipid metabolic process
Probab=22.68 E-value=71 Score=22.97 Aligned_cols=26 Identities=19% Similarity=0.312 Sum_probs=20.0
Q ss_pred HHhhhcchhhhhhhccCceEEEEEeccCC
Q 018257 111 ATWMPQGEKRKMLEEAKGIIIRFVIGHSA 139 (359)
Q Consensus 111 ~TW~~~~~~l~~l~~~~~i~v~FvlG~s~ 139 (359)
++||+.. +...++..|.-+|++|...
T Consensus 9 qSWM~DL---rS~I~~~~I~ql~ipGsHn 34 (51)
T PF03490_consen 9 QSWMSDL---RSSIGEMAITQLFIPGSHN 34 (51)
T ss_pred HHHHHHH---HHHHhcceeeeEEeccccc
Confidence 6899884 3455678899999999764
No 69
>cd06913 beta3GnTL1_like Beta 1, 3-N-acetylglucosaminyltransferase is essential for the formation of poly-N-acetyllactosamine . This family includes human Beta3GnTL1 and related eukaryotic proteins. Human Beta3GnTL1 is a putative beta-1,3-N-acetylglucosaminyltransferase. Beta3GnTL1 is expressed at various levels in most of tissues examined. Beta 1, 3-N-acetylglucosaminyltransferase has been found to be essential for the formation of poly-N-acetyllactosamine. Poly-N-acetyllactosamine is a unique carbohydrate composed of N-acetyllactosamine repeats. It is often an important part of cell-type-specific oligosaccharide structures and some functional oligosaccharides. It has been shown that the structure and biosynthesis of poly-N-acetyllactosamine display a dramatic change during development and oncogenesis. Several members of beta-1, 3-N-acetylglucosaminyltransferase have been identified.
Probab=22.17 E-value=5.4e+02 Score=22.58 Aligned_cols=43 Identities=16% Similarity=0.308 Sum_probs=30.6
Q ss_pred HHHHhcCCceEEEEeccceeeeHHHHHHHHhhcCCCCCeeEEe
Q 018257 180 ATAVSMWDAEFYIKVDDDVHVNLATLGMTLAAHRTKPRVYVGC 222 (359)
Q Consensus 180 ~wa~~~~~a~fvlKvDDDvfVn~~~L~~~L~~~~~~~~ly~G~ 222 (359)
..+.+....+|++.+|+|..+..+.|...+......+...+|+
T Consensus 77 N~g~~~a~gd~i~~lD~D~~~~~~~l~~~~~~~~~~~~~~v~~ 119 (219)
T cd06913 77 NQAIAQSSGRYLCFLDSDDVMMPQRIRLQYEAALQHPNSIIGC 119 (219)
T ss_pred HHHHHhcCCCEEEEECCCccCChhHHHHHHHHHHhCCCcEEEE
Confidence 4444555789999999999999988877665553334445565
No 70
>PF07507 WavE: WavE lipopolysaccharide synthesis; InterPro: IPR011122 These proteins are encoded by putative wav gene clusters, which are responsible for the synthesis of the core oligosaccharide (OS) region of Vibrio cholerae lipopolysaccharide [].
Probab=21.78 E-value=1.3e+02 Score=29.61 Aligned_cols=37 Identities=11% Similarity=0.029 Sum_probs=30.5
Q ss_pred HHHHHHHHHHhcCCceEEEEeccceeeeHHHHHHHHhhcCC
Q 018257 174 KTKTYFATAVSMWDAEFYIKVDDDVHVNLATLGMTLAAHRT 214 (359)
Q Consensus 174 Kt~~~~~wa~~~~~a~fvlKvDDDvfVn~~~L~~~L~~~~~ 214 (359)
=|+++++-|. .+|+||+=.|.++.=.++++++.....
T Consensus 86 St~aGL~~~~----~~Ya~KlRtD~~l~~~~~l~~~~~~~~ 122 (311)
T PF07507_consen 86 STLAGLKAAK----TKYAMKLRTDNRLTGNNFLDLYEKYPD 122 (311)
T ss_pred HHHHHHHHhC----CceEEEEcccccccchHHHHHHHHhcc
Confidence 4677777654 599999999999999999999987643
No 71
>PLN03182 xyloglucan 6-xylosyltransferase; Provisional
Probab=21.20 E-value=6.8e+02 Score=25.91 Aligned_cols=93 Identities=16% Similarity=0.147 Sum_probs=55.0
Q ss_pred HHHHHHhhhcchhhhhhhccCceEEEEEeccCCCC-----Cc-hhHHHHH---HHHhhcCCEEEecc---cccCcchhHH
Q 018257 107 DSVRATWMPQGEKRKMLEEAKGIIIRFVIGHSATS-----GG-ILDKAID---AEEKMHGDFLRLEH---IEGYLELSAK 174 (359)
Q Consensus 107 ~aIR~TW~~~~~~l~~l~~~~~i~v~FvlG~s~~~-----~~-~~~~~I~---~E~~~~~Dil~~df---~DsY~nLt~K 174 (359)
+.-|+.|........... ...-+++.|.|..+.+ ++ -+++.+. .=.+.||=-+..+. .+.......|
T Consensus 106 d~~R~~wl~~~p~~~~~~-~g~prVviVT~sdp~~c~n~~gd~yLlks~kNK~dYAr~HGY~~fyn~~~ld~~~p~~WaK 184 (429)
T PLN03182 106 DEQRRRWLRKNPGFPSFV-NGKPRVLLVTGSQPKPCENPVGDHYLLKSLKNKIDYCRLHGIEIFYNMAHLDAEMAGFWAK 184 (429)
T ss_pred HHHHHHHHHhCCCCCCcc-CCCCCEEEEeCCCCCcCCCcccHHHHHHHHHHHHHHHHHhCCEEEeehhhcCcCCCcchhH
Confidence 455667776532111111 1234678888876542 11 2233332 23456664444442 2334456778
Q ss_pred HHHHHHHHHhcCCceEEEEeccceee
Q 018257 175 TKTYFATAVSMWDAEFYIKVDDDVHV 200 (359)
Q Consensus 175 t~~~~~wa~~~~~a~fvlKvDDDvfV 200 (359)
.-++.+-+.++|+++|+.=+|.|+++
T Consensus 185 lpaLR~aM~~~PeaEWiWWLDsDALI 210 (429)
T PLN03182 185 LPLLRKLMLAHPEVEWIWWMDSDALF 210 (429)
T ss_pred HHHHHHHHHHCCCceEEEEecCCcee
Confidence 88888877789999999999999987
No 72
>PF04508 Pox_A_type_inc: Viral A-type inclusion protein repeat ; InterPro: IPR007596 The repeat is found in the A-type inclusion protein of the Poxvirus family [].; GO: 0016032 viral reproduction
Probab=20.77 E-value=1.2e+02 Score=18.42 Aligned_cols=19 Identities=16% Similarity=0.448 Sum_probs=12.9
Q ss_pred HHHHHHhHHHHhhhhhhhh
Q 018257 45 IQSQDKRLDGLKTKITAVR 63 (359)
Q Consensus 45 ~~~~~~~~~~le~el~~~~ 63 (359)
+..+..+|+.||-+|+..+
T Consensus 3 ~~rlr~rI~dLer~L~~C~ 21 (23)
T PF04508_consen 3 MNRLRNRISDLERQLSECR 21 (23)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 4456677788888877544
Done!