Query 018257
Match_columns 359
No_of_seqs 281 out of 1264
Neff 6.5
Searched_HMMs 29240
Date Mon Mar 25 12:24:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018257.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018257hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2j0a_A Beta-1,3-N-acetylglucos 99.9 1.2E-25 4.2E-30 214.5 15.1 193 89-308 12-216 (280)
2 1xhb_A Polypeptide N-acetylgal 92.4 3.2 0.00011 40.7 15.6 160 129-295 62-244 (472)
3 2d7i_A Polypeptide N-acetylgal 90.1 9.9 0.00034 38.5 16.9 159 130-295 146-324 (570)
4 1qg8_A Protein (spore coat pol 86.6 15 0.00053 31.9 15.0 154 128-295 30-201 (255)
5 3bcv_A Putative glycosyltransf 86.5 15 0.00051 31.6 13.7 165 128-302 34-220 (240)
6 2ffu_A Ppgalnact-2, polypeptid 86.1 13 0.00044 36.8 14.4 156 129-295 99-276 (501)
7 4fix_A UDP-galactofuranosyl tr 84.4 27 0.00092 36.3 16.4 117 177-295 258-403 (657)
8 2z86_A Chondroitin synthase; G 77.8 55 0.0019 32.9 15.7 116 179-295 166-316 (625)
9 2z86_A Chondroitin synthase; G 67.0 61 0.0021 32.6 13.0 150 128-295 404-559 (625)
10 4hg6_A Cellulose synthase subu 61.6 1.6E+02 0.0056 30.9 16.3 127 178-307 229-368 (802)
11 4dzn_A Coiled-coil peptide CC- 47.9 19 0.00064 22.0 3.0 28 37-64 3-30 (33)
12 2akf_A Coronin-1A; coiled coil 41.0 38 0.0013 20.7 3.7 26 36-61 6-31 (32)
13 1fo8_A Alpha-1,3-mannosyl-glyc 36.0 77 0.0026 30.2 7.1 88 177-272 89-179 (343)
14 2pnv_A Small conductance calci 35.8 40 0.0014 22.5 3.5 30 32-64 8-37 (43)
15 2c0n_A A197; thermophil protei 31.8 2.7E+02 0.0092 24.6 9.7 133 148-292 16-159 (203)
16 2z5i_A TM, general control pro 30.3 63 0.0022 22.3 4.0 26 40-65 9-34 (52)
17 2bo4_A Mannosylglycerate synth 29.4 2.3E+02 0.0079 27.3 9.5 163 128-299 28-209 (397)
18 2l5g_B Putative uncharacterize 28.3 65 0.0022 21.4 3.5 26 33-58 13-38 (42)
19 1g6u_A Domain swapped dimer; d 24.3 94 0.0032 20.4 3.7 26 37-62 21-46 (48)
20 2lnd_A De novo designed protei 24.0 1.6E+02 0.0055 22.4 5.5 74 96-184 31-104 (112)
21 1omz_A Alpha-1,4-N-acetylhexos 21.4 89 0.0031 29.2 4.5 39 186-224 105-143 (293)
No 1
>2j0a_A Beta-1,3-N-acetylglucosaminyltransferase manic FR; glycosyltransferase, developmental protein, transmembrane, G apparatus, notch signaling; 1.8A {Mus musculus} PDB: 2j0b_A*
Probab=99.93 E-value=1.2e-25 Score=214.46 Aligned_cols=193 Identities=16% Similarity=0.153 Sum_probs=131.1
Q ss_pred ceeEEEEEeCCCCCH-HHHHHHHHHhhhcchhhhhhhccCceEEEEEeccCCCCCchhHHHHHHHHhhcCCEEEeccc--
Q 018257 89 KYFMVIGINTAFSSR-KRRDSVRATWMPQGEKRKMLEEAKGIIIRFVIGHSATSGGILDKAIDAEEKMHGDFLRLEHI-- 165 (359)
Q Consensus 89 ~~~lli~V~S~~~~~-~rR~aIR~TW~~~~~~l~~l~~~~~i~v~FvlG~s~~~~~~~~~~I~~E~~~~~Dil~~df~-- 165 (359)
.-.|+|+|+|++.+. +||++||+||++.+.. . + ||.+... +.. +... ..++++..++.
T Consensus 12 ~~~I~~~V~T~~~~~~~R~~~I~~TW~~~~~~-------~---~-fifsd~~--d~~----l~~~--~~~~~~~~~~~~~ 72 (280)
T 2j0a_A 12 LGDIFIAVKTTWAFHRSRLDLLLDTWVSRIRQ-------Q---T-FIFTDSP--DER----LQER--LGPHLVVTQCSAE 72 (280)
T ss_dssp GGGEEEEEECCGGGTTTTHHHHHHTGGGGSGG-------G---E-EEEESSC--CHH----HHHH--HGGGEEECCC---
T ss_pred cccEEEEEECcHHHHHHHHHHHHHHHhccCCC-------c---e-EEEcCCC--ccc----cccc--ccccceecccccc
Confidence 457889999999854 6889999999998631 1 2 3333222 122 2222 35678887764
Q ss_pred ccCcchhHHHHHHHHHHHhcCCceEEEEeccceeeeHHHHHHHHhhcCCCCCeeEEecccCcccccCCCccccCcccccc
Q 018257 166 EGYLELSAKTKTYFATAVSMWDAEFYIKVDDDVHVNLATLGMTLAAHRTKPRVYVGCMKSGPVLARKGVKYYEPEYWKFG 245 (359)
Q Consensus 166 DsY~nLt~Kt~~~~~wa~~~~~a~fvlKvDDDvfVn~~~L~~~L~~~~~~~~ly~G~~~~~pv~r~~~~K~~~p~~~~f~ 245 (359)
+++.+|+.|+...+.+.. +++++|++|+|||+|||+++|+.+|...++.+++|+|......+++ .++++|...+
T Consensus 73 ~~~~~l~~K~~~~~~~~l-~~~~~Wf~~~DDDtyv~~~nL~~~L~~~d~~~~~YiG~~~~~~~~~---~~~~~~~~~~-- 146 (280)
T 2j0a_A 73 HSHPALSCKMAAEFDAFL-VSGLRWFCHVDDDNYVNPKALLQLLKTFPQDRDVYVGKPSLNRPIH---ASELQSKQRT-- 146 (280)
T ss_dssp ----CCCHHHHHHHHHHH-HHTCSEEEEEETTEEECHHHHHHHHTTSCTTSCCEEECEEC--------------------
T ss_pred ccccchHHHHHHHHHHHh-CCCCcEEEEeCCCcEEcHHHHHHHHHhCCCCCCEEEEEeccCcccc---ccccCccccc--
Confidence 477899999999998754 3699999999999999999999999999999999999975432222 1345553322
Q ss_pred CCCCcccccc-CCCeeeeCHHHHHHHHHhcccc-------CCCCcchHHHHHHHh-cCCCeEecCCCcccCC
Q 018257 246 EIGNKYFRHA-TGQLYALSKDLATYISINQHLL-------HKYANEDVSLGSWFI-GLDVEHVDDRRLCCGT 308 (359)
Q Consensus 246 ~p~~~Yp~y~-~G~gYvlS~dla~~i~~~~~~l-------~~~~~EDV~vG~~l~-~l~v~~~~~~~f~~~~ 308 (359)
+...| +|| +|+|||||++++++|+.....- .....|||++|+|+. .+||.+.+.++|+...
T Consensus 147 -~~~~~-~y~~GGaG~vlSr~~l~~l~~~~~~~~~~~~~~~~~~~dD~~lG~Cl~~~lGV~~~~~~~Fh~~~ 216 (280)
T 2j0a_A 147 -KLVRF-WFATGGAGFCINRQLALKMVPWASGSHFVDTSALIRLPDDCTVGYIIECKLGGRLQPSPLFHSHL 216 (280)
T ss_dssp -----C-CEECGGGCEEEEHHHHHHHHHHHTTCTTSCCTTTTTSCHHHHHHHHHHHTTCCCEEECTTCCCSS
T ss_pred -ccccc-CcccCCCEEEECHHHHHHHHHhhcccccccccccCCCCccHHHHHHHHhcCCCCceecccccCCC
Confidence 22245 466 5789999999999999753322 223469999999998 9999999999997643
No 2
>1xhb_A Polypeptide N-acetylgalactosaminyltransferase 1; glycosyltransferase-A (GT-A); HET: NAG BMA; 2.50A {Mus musculus} SCOP: b.42.2.1 c.68.1.17
Probab=92.39 E-value=3.2 Score=40.65 Aligned_cols=160 Identities=13% Similarity=0.083 Sum_probs=83.8
Q ss_pred eEEEEEeccCCCCCchhHHHHHHHHhhcC-CEEEecccccCcchhHHHHHHHHHHHhcCCceEEEEeccceeeeHHHHHH
Q 018257 129 IIIRFVIGHSATSGGILDKAIDAEEKMHG-DFLRLEHIEGYLELSAKTKTYFATAVSMWDAEFYIKVDDDVHVNLATLGM 207 (359)
Q Consensus 129 i~v~FvlG~s~~~~~~~~~~I~~E~~~~~-Dil~~df~DsY~nLt~Kt~~~~~wa~~~~~a~fvlKvDDDvfVn~~~L~~ 207 (359)
..++.|-..|. ++.....|++-.+.+. .+..+...+.. .+ ..+...+.+....+|++..|+|+.+..+.|..
T Consensus 62 ~EIIvVDd~S~--d~~t~~~l~~~~~~~~~~v~vi~~~~n~-G~----~~a~N~g~~~A~gd~i~flD~D~~~~p~~L~~ 134 (472)
T 1xhb_A 62 EEIVLVDDASE--RDFLKRPLESYVKKLKVPVHVIRMEQRS-GL----IRARLKGAAVSRGQVITFLDAHCECTAGWLEP 134 (472)
T ss_dssp EEEEEEECSCC--CGGGTHHHHHHHHSSSSCEEEEECSSCC-CH----HHHHHHHHHHCCSSEEEEEESSEEECTTCHHH
T ss_pred eEEEEEECCCC--cHHHHHHHHHHHHHCCCcEEEEECCCCC-Ch----HHHHHHHHHhccCCeEEEECCCeEeCccHHHH
Confidence 35666665444 2234445555555666 45555443322 12 22333444445789999999999999988887
Q ss_pred HHhhcCCCCCee-EEecc--c-CcccccC-------CCccccCcccc-c---------cC-CCCccccccCCCeeeeCHH
Q 018257 208 TLAAHRTKPRVY-VGCMK--S-GPVLARK-------GVKYYEPEYWK-F---------GE-IGNKYFRHATGQLYALSKD 265 (359)
Q Consensus 208 ~L~~~~~~~~ly-~G~~~--~-~pv~r~~-------~~K~~~p~~~~-f---------~~-p~~~Yp~y~~G~gYvlS~d 265 (359)
++......+... .|.+. . ....... .-.|.....+. + .+ .....-+++.|+.++++++
T Consensus 135 ll~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~irr~ 214 (472)
T 1xhb_A 135 LLARIKHDRRTVVCPIIDVISDDTFEYMAGSDMTYGGFNWKLNFRWYPVPQREMDRRKGDRTLPVRTPTMAGGLFSIDRD 214 (472)
T ss_dssp HHHHHHHCTTEEEEEEEEEECSSSCCEECCCTTEEEEECTTCCEEEEECCHHHHHHTTTCTTSCEECSBCCSSSEEEEHH
T ss_pred HHHHHHhCCCEEEEeeeeeEcCCCceeccCCCcccceeeccceeecccCCHHHHhcccCCCCCcccCccccceeEEEEHH
Confidence 777654333333 33321 1 1000000 00111100000 0 00 0022335688999999999
Q ss_pred HHHHHHHhccccCCCCcchHHHHHHHhcCC
Q 018257 266 LATYISINQHLLHKYANEDVSLGSWFIGLD 295 (359)
Q Consensus 266 la~~i~~~~~~l~~~~~EDV~vG~~l~~l~ 295 (359)
+...+---...+..+..||+-++.-+...|
T Consensus 215 ~~~~iGgfde~~~~~g~ED~dl~~R~~~~G 244 (472)
T 1xhb_A 215 YFQEIGTYDAGMDIWGGENLEISFRIWQCG 244 (472)
T ss_dssp HHHHTTSCCTTSCTTCCCCSHHHHHHHHTT
T ss_pred HHHHcCCCCCcccccCchhHHHHHHHHhcC
Confidence 998875433344445589988876664443
No 3
>2d7i_A Polypeptide N-acetylgalactosaminyltransferase 10; beta trefoil, rossmann fold; HET: NAG NGA UDP; 2.50A {Homo sapiens} PDB: 2d7r_A*
Probab=90.08 E-value=9.9 Score=38.55 Aligned_cols=159 Identities=13% Similarity=0.010 Sum_probs=83.9
Q ss_pred EEEEEeccCCCCCchhHHHHHHHHhhcCCEEEecccccCcchhHHHHHHHHHHHhcCCceEEEEeccceeeeHHHHHHHH
Q 018257 130 IIRFVIGHSATSGGILDKAIDAEEKMHGDFLRLEHIEGYLELSAKTKTYFATAVSMWDAEFYIKVDDDVHVNLATLGMTL 209 (359)
Q Consensus 130 ~v~FvlG~s~~~~~~~~~~I~~E~~~~~Dil~~df~DsY~nLt~Kt~~~~~wa~~~~~a~fvlKvDDDvfVn~~~L~~~L 209 (359)
.++.|-..|. ++++...|++..+.+..|..+...+.. .+.. +...+.+....+|++..|+|+.+..+-|..+|
T Consensus 146 EIIVVDDgS~--D~tl~~~l~~~~~~~~~v~vi~~~~n~-G~~~----A~N~G~~~A~gd~i~fLD~D~~~~p~~L~~ll 218 (570)
T 2d7i_A 146 EIVLVDDFSD--REHLKKPLEDYMALFPSVRILRTKKRE-GLIR----TRMLGASVATGDVITFLDSHCEANVNWLPPLL 218 (570)
T ss_dssp EEEEEECSCC--CGGGTHHHHHHHTTSTTEEEEECSSCC-CHHH----HHHHHHHHCCSSEEEECCSSEEECTTCSHHHH
T ss_pred EEEEEECCCC--cHHHHHHHHHHHHhCCeEEEEECCCCC-CHHH----HHHHHHHhcCCCEEEEEcCCccccccHHHHHH
Confidence 5666665554 234345566555666666555443322 2222 23333333468999999999999987777776
Q ss_pred hhcCCCCCeeEEecc---cC-cc-ccc---CC----Cccc-----cC--ccccccCCC-CccccccCCCeeeeCHHHHHH
Q 018257 210 AAHRTKPRVYVGCMK---SG-PV-LAR---KG----VKYY-----EP--EYWKFGEIG-NKYFRHATGQLYALSKDLATY 269 (359)
Q Consensus 210 ~~~~~~~~ly~G~~~---~~-pv-~r~---~~----~K~~-----~p--~~~~f~~p~-~~Yp~y~~G~gYvlS~dla~~ 269 (359)
......+.+.+|... .+ .. .+. .. -.|. .+ ....+.++. ....+++.|+++++++++...
T Consensus 219 ~~l~~~~~~vv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~irr~~~~~ 298 (570)
T 2d7i_A 219 DRIARNRKTIVCPMIDVIDHDDFRYETQAGDAMRGAFDWEMYYKRIPIPPELQKADPSDPFESPVMAGGLFAVDRKWFWE 298 (570)
T ss_dssp HHHHHCTTEEEEEEEEEECTTTCCEECCTTSSCEEEECTTCCEEEECCCTTTCCSSTTSCEECSSCCSSSEEEEHHHHHH
T ss_pred HHHHhCCCEEEeeeeeccCCCchhhccccCCcccccccccccccccccchhhhccCCCcceecccccceEEEEEHHHHHh
Confidence 655433444444321 11 00 000 00 0010 00 000000000 112345789999999999988
Q ss_pred HHHhccccCCCCcchHHHHHHHhcCC
Q 018257 270 ISINQHLLHKYANEDVSLGSWFIGLD 295 (359)
Q Consensus 270 i~~~~~~l~~~~~EDV~vG~~l~~l~ 295 (359)
+---...+..+..||+-+..-+...|
T Consensus 299 iGgfDe~~~~~g~ED~dl~~Rl~~~G 324 (570)
T 2d7i_A 299 LGGYDPGLEIWGGEQYEISFKVWMCG 324 (570)
T ss_dssp TTSSCTTCCSSSSHHHHHHHHHHHTT
T ss_pred cCCCCCcccccCcchHHHHHHHHhCC
Confidence 75433344444579998876665444
No 4
>1qg8_A Protein (spore coat polysaccharide biosynthesis P SPSA); glycosyltransferase, transferase; 1.50A {Bacillus subtilis} SCOP: c.68.1.1 PDB: 1h7q_A* 1h7l_A 1qgq_A* 1qgs_A*
Probab=86.60 E-value=15 Score=31.87 Aligned_cols=154 Identities=8% Similarity=-0.124 Sum_probs=82.3
Q ss_pred ceEEEEEeccCCCCCchhHHHHHHHHhhcCCEEEecccccC-----cchhHHHHHHHHHHHhcCCceEEEEeccceeeeH
Q 018257 128 GIIIRFVIGHSATSGGILDKAIDAEEKMHGDFLRLEHIEGY-----LELSAKTKTYFATAVSMWDAEFYIKVDDDVHVNL 202 (359)
Q Consensus 128 ~i~v~FvlG~s~~~~~~~~~~I~~E~~~~~Dil~~df~DsY-----~nLt~Kt~~~~~wa~~~~~a~fvlKvDDDvfVn~ 202 (359)
.+.++.|-..|. +.. ..+.++......|..+.....- .|.. .-..+..+.+..+.+|++..|+|.++..
T Consensus 30 ~~eiivvDd~S~---d~t-~~~~~~~~~~~~i~~i~~~~~~~~~~~~n~G--~~~a~N~gi~~a~g~~i~~lD~Dd~~~~ 103 (255)
T 1qg8_A 30 DFELFIMDDNSN---EET-LNVIRPFLNDNRVRFYQSDISGVKERTEKTR--YAALINQAIEMAEGEYITYATDDNIYMP 103 (255)
T ss_dssp CEEEEEEECSCC---HHH-HHHHGGGGGSTTEEEEECCCCSHHHHHSSCH--HHHHHHHHHHHCCCSEEEEEETTEEECT
T ss_pred ceEEEEEECCCC---chH-HHHHHHHhhcCCEEEEecccccccccccccC--HHHHHHHHHHHcCCCEEEEeCCCCccCh
Confidence 466777765553 222 2233333334455444332100 2322 3334555555558899999999999998
Q ss_pred HHHHHHHhhcC--CCCCeeEEecc----c--CcccccCCCccccCccccccCCCCccccccCCCeeeeCHHHHHHHHHhc
Q 018257 203 ATLGMTLAAHR--TKPRVYVGCMK----S--GPVLARKGVKYYEPEYWKFGEIGNKYFRHATGQLYALSKDLATYISINQ 274 (359)
Q Consensus 203 ~~L~~~L~~~~--~~~~ly~G~~~----~--~pv~r~~~~K~~~p~~~~f~~p~~~Yp~y~~G~gYvlS~dla~~i~~~~ 274 (359)
+.|...+.... +.-.+..|.+. . +... ..+..|.... ......+..|++.++.++++..+-...
T Consensus 104 ~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~----~~~~~~~~~~----~~~~~~~~~~~~~~~rr~~~~~~g~~f 175 (255)
T 1qg8_A 104 DRLLKMVRELDTHPEKAVIYSASKTYHLNENRDIV----KETVRPAAQV----TWNAPCAIDHCSVMHRYSVLEKVKEKF 175 (255)
T ss_dssp THHHHHHHHHHHCTTCCEEEEEEEEEEEC---CEE----EEEEECCCSC----BSCCTTTSCGGGEEEETHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCceEEEeceEEEEeCCCCcch----hhccCchHHH----HHhhcCCCccceEEEEHHHHHhhcccc
Confidence 88877776653 23344444432 1 1111 1111221100 012334578899999999999976211
Q ss_pred -----cccCCCCcchHHHHHHHhcCC
Q 018257 275 -----HLLHKYANEDVSLGSWFIGLD 295 (359)
Q Consensus 275 -----~~l~~~~~EDV~vG~~l~~l~ 295 (359)
........||..+..-+...+
T Consensus 176 ~~~~~~~~~~~~~eD~~~~~r~~~~g 201 (255)
T 1qg8_A 176 GSYWDESPAFYRIGDARFFWRVNHFY 201 (255)
T ss_dssp SSSSCCCGGGSTTHHHHHHHHHTTTC
T ss_pred cccccCCcccchHHHHHHHHHHHHhC
Confidence 011223579998887775443
No 5
>3bcv_A Putative glycosyltransferase protein; protein structure initiative II, PSI-II NYSGXRC, structural genomics; 2.35A {Bacteroides fragilis}
Probab=86.52 E-value=15 Score=31.59 Aligned_cols=165 Identities=11% Similarity=-0.003 Sum_probs=81.0
Q ss_pred ceEEEEEeccCCCCCchhHHHHHHHHhhcCCEEEecccccCcchhHHHHHHHHHHHhcCCceEEEEeccceeeeHHHHHH
Q 018257 128 GIIIRFVIGHSATSGGILDKAIDAEEKMHGDFLRLEHIEGYLELSAKTKTYFATAVSMWDAEFYIKVDDDVHVNLATLGM 207 (359)
Q Consensus 128 ~i~v~FvlG~s~~~~~~~~~~I~~E~~~~~Dil~~df~DsY~nLt~Kt~~~~~wa~~~~~a~fvlKvDDDvfVn~~~L~~ 207 (359)
.+.++.|-..|.+ .....+++-.+.+..|..+. .+ |.. .-.....+.+....+|++.+|+|.++..+.|..
T Consensus 34 ~~eiIvvDd~S~d---~t~~~~~~~~~~~~~i~~i~-~~---n~G--~~~a~N~g~~~a~g~~i~~lD~Dd~~~~~~l~~ 104 (240)
T 3bcv_A 34 DIEIILIDDESPD---NCPKICDDYAAQYPNIKVIH-KK---NAG--LGMACNSGLDVATGEYVAFCDSDDYVDSDMYMT 104 (240)
T ss_dssp SEEEEEEECCCSS---SHHHHHHHHHHHCSSEEEEE-CC---CCC--HHHHHHHHHHHCCSSEEEECCTTCCCCTTHHHH
T ss_pred CeEEEEEECCCCc---CHHHHHHHHHhhCCCEEEEE-CC---CCC--hHHHHHHHHHHcCCCEEEEECCCCcCCHHHHHH
Confidence 4667777655542 23344554455666665554 22 322 223344455545789999999999999888877
Q ss_pred HHhhcCC-CCCeeEEecc----cCc----ccccC-CCccccCccc------cccCCCCcc---c-cccCCCeeeeCHHHH
Q 018257 208 TLAAHRT-KPRVYVGCMK----SGP----VLARK-GVKYYEPEYW------KFGEIGNKY---F-RHATGQLYALSKDLA 267 (359)
Q Consensus 208 ~L~~~~~-~~~ly~G~~~----~~p----v~r~~-~~K~~~p~~~------~f~~p~~~Y---p-~y~~G~gYvlS~dla 267 (359)
++..... ...+.+|... .+. +.... ...++..... .++ ....+ + ...+|++.++.++++
T Consensus 105 l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~rr~~~ 183 (240)
T 3bcv_A 105 MYNVAQKYTCDAVFTGLKRITMAGIPTGTVTHQKEFKLYKNKNEIHTLLKDLIA-SDPYAREERAIQVSAKVVLYRRNLI 183 (240)
T ss_dssp HHHHHHHHTCSEEEC--------------------CEEECSHHHHHHHHGGGTS-SCHHHHHHHHHHHTCSCEEEEHHHH
T ss_pred HHHHHHhcCCCEEEEeeEEEccCCccccccccccccccccCHHHHHHHHHHHhh-cchhhccccccccchhheeeeHHHH
Confidence 7765532 3444444321 111 11000 0011111000 000 00000 0 014578899999999
Q ss_pred HHHHHhccccCCCCcchHHHHHHHhcC--CCeEecCC
Q 018257 268 TYISINQHLLHKYANEDVSLGSWFIGL--DVEHVDDR 302 (359)
Q Consensus 268 ~~i~~~~~~l~~~~~EDV~vG~~l~~l--~v~~~~~~ 302 (359)
..+-.....-..+..||+.++.-+... .+..+++.
T Consensus 184 ~~~g~~f~~~~~~~~eD~~~~~r~~~~g~~i~~~~~~ 220 (240)
T 3bcv_A 184 EKKHLRFVSERILPSEDLIFNVDVLANSNIVCVLPQT 220 (240)
T ss_dssp HHTTCCCCCTTTCTTHHHHHHHHHHTTCSCEEECC--
T ss_pred HHcCCccCCCCCccCCCHHHHHHHHHhCCEEEEECCC
Confidence 885311111112346999998766544 45555544
No 6
>2ffu_A Ppgalnact-2, polypeptide N-acetylgalactosaminyltransferase 2, protein-UDP; ppgalnact, mucin, glycosyltransferase; HET: UDP; 1.64A {Homo sapiens} PDB: 2ffv_A*
Probab=86.15 E-value=13 Score=36.76 Aligned_cols=156 Identities=12% Similarity=-0.030 Sum_probs=81.1
Q ss_pred eEEEEEeccCCCCCchhHHHHHHHHhhcCCEEEecccccCcchhHHHHHHHHHHHhcCCceEEEEeccceeeeHHHHHHH
Q 018257 129 IIIRFVIGHSATSGGILDKAIDAEEKMHGDFLRLEHIEGYLELSAKTKTYFATAVSMWDAEFYIKVDDDVHVNLATLGMT 208 (359)
Q Consensus 129 i~v~FvlG~s~~~~~~~~~~I~~E~~~~~Dil~~df~DsY~nLt~Kt~~~~~wa~~~~~a~fvlKvDDDvfVn~~~L~~~ 208 (359)
..+++|-..|.+ +++. ...+.+..+-.+...+ |.- ...++..+.+....+|++.+|+|+.+.++-|..+
T Consensus 99 ~EIIvVDDgS~D--~t~~----~~~~~~~~v~vi~~~~---n~G--~~~A~N~G~~~A~gd~i~flD~D~~~~p~~L~~l 167 (501)
T 2ffu_A 99 KEIILVDDYSND--PEDG----ALLGKIEKVRVLRNDR---REG--LMRSRVRGADAAQAKVLTFLDSHCECNEHWLEPL 167 (501)
T ss_dssp EEEEEEECSCSC--THHH----HGGGGBTTEEEEECSS---CCH--HHHHHHHHHHHCCSSEEEECCSSEEECTTCHHHH
T ss_pred eeEEEEECCCCc--hHHH----HHHhcCCCEEEEECCC---CcC--HHHHHHHHHHhcCCCEEEEECCCcccCccHHHHH
Confidence 457777655542 3332 2234455665554433 222 2233444444457899999999999998887777
Q ss_pred HhhcCCCCCeeEEe-cc--c-Ccc--------ccc-----CCCccc-cCccc---cccCC-CCccccccCCCeeeeCHHH
Q 018257 209 LAAHRTKPRVYVGC-MK--S-GPV--------LAR-----KGVKYY-EPEYW---KFGEI-GNKYFRHATGQLYALSKDL 266 (359)
Q Consensus 209 L~~~~~~~~ly~G~-~~--~-~pv--------~r~-----~~~K~~-~p~~~---~f~~p-~~~Yp~y~~G~gYvlS~dl 266 (359)
+......+...++. +. . ... .+. ...+|. .+... ...++ .....+++.|++.++++++
T Consensus 168 l~~~~~~~~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~irr~~ 247 (501)
T 2ffu_A 168 LERVAEDRTRVVSPIIDVINMDNFQYVGASADLKGGFDWNLVFKWDYMTPEQRRSRQGNPVAPIKTPMIAGGLFVMDKFY 247 (501)
T ss_dssp HHHHHHCTTEEEEEEEEEECTTTCCEECBCSSEEEEECTTCCEEEEECCHHHHHHTSSCTTSCEECSSCCSSSEEEEHHH
T ss_pred HHHHHhCCCeEEEeeeccCcCCCceeecCCcccceEeeecCCCccccCCHHHHhhccCCCCCcccCccccceEEEEEHHH
Confidence 76654333333332 21 0 000 000 000110 11000 00000 1122356789999999999
Q ss_pred HHHHHHhccccCCCCcchHHHHHHHhcCC
Q 018257 267 ATYISINQHLLHKYANEDVSLGSWFIGLD 295 (359)
Q Consensus 267 a~~i~~~~~~l~~~~~EDV~vG~~l~~l~ 295 (359)
...+---...+..+..||+-+..-+...|
T Consensus 248 ~~~iGgfde~~~~~g~ED~dl~~Rl~~~G 276 (501)
T 2ffu_A 248 FEELGKYDMMMDVWGGENLEISFRVWQCG 276 (501)
T ss_dssp HHHTTCCCTTCCSSSSHHHHHHHHHHHTT
T ss_pred HHHhCCCCccccccCcchHHHHHHHHhcC
Confidence 98875433344444589998876554343
No 7
>4fix_A UDP-galactofuranosyl transferase GLFT2; CAZY GT-2 family, glycosyltrans carbohydrate binding, membrane; 2.45A {Mycobacterium tuberculosis} PDB: 4fiy_A*
Probab=84.44 E-value=27 Score=36.27 Aligned_cols=117 Identities=18% Similarity=0.131 Sum_probs=65.4
Q ss_pred HHHHHHHhcCCceEEEEeccceeeeHHHHHHHHhhcCCCC-CeeEE-ecc--cCc--------ccccCCCccc-cCcccc
Q 018257 177 TYFATAVSMWDAEFYIKVDDDVHVNLATLGMTLAAHRTKP-RVYVG-CMK--SGP--------VLARKGVKYY-EPEYWK 243 (359)
Q Consensus 177 ~~~~wa~~~~~a~fvlKvDDDvfVn~~~L~~~L~~~~~~~-~ly~G-~~~--~~p--------v~r~~~~K~~-~p~~~~ 243 (359)
.+++.|....+++|++..|||+.+..+.|..++......+ ...+| .+. ..+ .+...+..|. .|...+
T Consensus 258 ~Gl~~A~g~~~~dyIlfLD~D~~~~pd~L~~ll~~l~~~~~~~~vg~~il~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 337 (657)
T 4fix_A 258 RVMYEALKNTDCQQILFMDDDIRLEPDSILRVLAMHRFAKAPMLVGGQMLNLQEPSHLHIMGEVVDRSIFMWTAAPHAEY 337 (657)
T ss_dssp HHHHHHHHHCCCSEEEEECSSEEECTHHHHHHHHHHHHBSSCCEEEEEEEETTSTTEECCSCEEEETTTTEEEECTTCCS
T ss_pred HHHHHHHhcCCCCEEEEECCCCccChhHHHHHHHHHHhCCCcEEEEeEEecCCCCceeeecccEeccccccccccccccc
Confidence 3566665544789999999999999988888776553222 22344 332 111 1000000000 000000
Q ss_pred ---ccC-------------CCCccccccCCCeeeeCHHHHHHHHHhccccCCCCcchHHHHHHHhcCC
Q 018257 244 ---FGE-------------IGNKYFRHATGQLYALSKDLATYISINQHLLHKYANEDVSLGSWFIGLD 295 (359)
Q Consensus 244 ---f~~-------------p~~~Yp~y~~G~gYvlS~dla~~i~~~~~~l~~~~~EDV~vG~~l~~l~ 295 (359)
|+. .......|++|.+.++.+++++.+---.. -.+..||+-++.=+...|
T Consensus 338 ~~~f~~~~l~~~~~~~~~~~~~~~v~~~~g~~~lirr~v~~~vGgfd~--~F~~~ED~Dl~lR~~~~G 403 (657)
T 4fix_A 338 DHDFAEYPLNDNNSRSKLLHRRIDVDYNGWWTCMIPRQVAEELGQPLP--LFIKWDDADYGLRAAEHG 403 (657)
T ss_dssp CEETTTSCSSCSSHHHHGGGBCCCCSBCCTTEEEEEHHHHHHHCSCCS--CSSSSHHHHHHHHHHHTT
T ss_pred cccccccccccccccccccccceeccccchhHhHhhHHHHHHhCCChh--HhccCcHHHHHHHHHHcC
Confidence 000 11223457899999999999998743211 123469999998776554
No 8
>2z86_A Chondroitin synthase; GT-A, glycosyltransferase A, fold; HET: UGA UDP; 2.40A {Escherichia coli} PDB: 2z87_A*
Probab=77.79 E-value=55 Score=32.94 Aligned_cols=116 Identities=14% Similarity=0.123 Sum_probs=63.3
Q ss_pred HHHHHhcCCceEEEEeccceeeeHHHHHHHHhhcCCCCC-eeEEecc---cCc--c---------ccc------------
Q 018257 179 FATAVSMWDAEFYIKVDDDVHVNLATLGMTLAAHRTKPR-VYVGCMK---SGP--V---------LAR------------ 231 (359)
Q Consensus 179 ~~wa~~~~~a~fvlKvDDDvfVn~~~L~~~L~~~~~~~~-ly~G~~~---~~p--v---------~r~------------ 231 (359)
+..+.+..+.+|++..|+|..+..+.|..++......+. ..+|... ... . .+.
T Consensus 166 ~N~g~~~a~g~~v~~lD~D~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (625)
T 2z86_A 166 RNLGLRAAKYNYVAILDCDMAPNPLWVQSYMELLAVDDNVALIGPRKYIDTSKHTYLDFLSQKSLINEIPEIITNNQVAG 245 (625)
T ss_dssp HHHHHHHCCSSEEEEECTTEEECTTHHHHHHHHHHHCTTEEEECCEEEECCTTCCHHHHHHSTTGGGTSCC---------
T ss_pred HHHHHHhCCcCEEEEECCCCCCCHHHHHHHHHHHhcCCceEEEEeeeeccCcccchhhcccchHHhhhcchhccCCchhh
Confidence 344444458899999999999998888877766532222 3334321 110 0 000
Q ss_pred -----CCCccccCccc---cccCCCCccccccCCCeeeeCHHHHHHHHHhccccCCCCcchHHHHHHHhcCC
Q 018257 232 -----KGVKYYEPEYW---KFGEIGNKYFRHATGQLYALSKDLATYISINQHLLHKYANEDVSLGSWFIGLD 295 (359)
Q Consensus 232 -----~~~K~~~p~~~---~f~~p~~~Yp~y~~G~gYvlS~dla~~i~~~~~~l~~~~~EDV~vG~~l~~l~ 295 (359)
....|...... .+. .......++.|++.+++++++..+---...+..+..||.-++.=+...|
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~rr~~l~~iGgfde~~~~~g~ED~dl~~Rl~~~G 316 (625)
T 2z86_A 246 KVEQNKSVDWRIEHFKNTDNLR-LCNTPFRFFSGGNVAFAKKWLFRAGWFDEEFTHWGGEDNEFGYRLYREG 316 (625)
T ss_dssp ------CCCTHHHHHHHTTTTT-TCSCGGGGCCTTEEEEETHHHHHHCCCCTTCSSCCCHHHHHHHHHHHTT
T ss_pred hhccCCccccchhhhccccccc-ccCCceeEEeeceeeeEHHHHHHhCCCccccccCCcchhhhhhhHHhCC
Confidence 00011000000 000 0011123578999999999999874322334444579999987775554
No 9
>2z86_A Chondroitin synthase; GT-A, glycosyltransferase A, fold; HET: UGA UDP; 2.40A {Escherichia coli} PDB: 2z87_A*
Probab=67.02 E-value=61 Score=32.55 Aligned_cols=150 Identities=9% Similarity=0.010 Sum_probs=76.4
Q ss_pred ceEEEEEeccCCCCCchhHHHHHHHHhhcCCEEEecccccCcchhHHHHHHHHHHHhcCCceEEEEeccceeeeHHHHHH
Q 018257 128 GIIIRFVIGHSATSGGILDKAIDAEEKMHGDFLRLEHIEGYLELSAKTKTYFATAVSMWDAEFYIKVDDDVHVNLATLGM 207 (359)
Q Consensus 128 ~i~v~FvlG~s~~~~~~~~~~I~~E~~~~~Dil~~df~DsY~nLt~Kt~~~~~wa~~~~~a~fvlKvDDDvfVn~~~L~~ 207 (359)
.+.++.|-..|.+ + ....+.+-.+.+..+..+. . .|.. .-..+..+.+....+|++..|+|.++..+.|..
T Consensus 404 ~~eiivvdd~S~d--~-t~~~~~~~~~~~~~i~~~~-~---~n~G--~~~a~n~g~~~a~g~~i~~ld~D~~~~~~~l~~ 474 (625)
T 2z86_A 404 DLEVCICDDGSTD--D-TLRILQEHYANHPRVRFIS-Q---KNKG--IGSASNTAVRLCRGFYIGQLDSDDFLEPDAVEL 474 (625)
T ss_dssp SEEEEEEEESCSS--S-HHHHHHHHHTTCTTEEEEE-E---CCCC--HHHHHHHHHHHCCSSEEEECCTTCEECTTHHHH
T ss_pred CeEEEEEECcCCh--h-HHHHHHHHHhhCCcEEEEe-C---CCCC--HHHHHHHHHHhcCCCEEEEECCCcccChhHHHH
Confidence 4667777665542 2 2333443344455565553 2 2221 223344455545789999999999999988888
Q ss_pred HHhhcC--CCCCeeEEecc----cCcccccCCCccccCccccccCCCCccccccCCCeeeeCHHHHHHHHHhccccCCCC
Q 018257 208 TLAAHR--TKPRVYVGCMK----SGPVLARKGVKYYEPEYWKFGEIGNKYFRHATGQLYALSKDLATYISINQHLLHKYA 281 (359)
Q Consensus 208 ~L~~~~--~~~~ly~G~~~----~~pv~r~~~~K~~~p~~~~f~~p~~~Yp~y~~G~gYvlS~dla~~i~~~~~~l~~~~ 281 (359)
.+.... +.-.+..|... .+..+... +..+. +. +......++.|.+.++.+++...+---...+ ..
T Consensus 475 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~---~~~~~-~~---~~~~~~~~~~~~~~~~~r~~~~~~ggfd~~~--~~ 545 (625)
T 2z86_A 475 CLDEFRKDLSLACVYTTNRNIDREGNLISNG---YNWPI-YS---REKLTSAMICHHFRMFTARAWNLTEGFNESI--SN 545 (625)
T ss_dssp HHHHHHHCTTCSEEEEEEEEECTTSCEEEEC---CCCSS-CC---HHHHTTSCCCCSCEEEEHHHHTTTTCCCSSC--SS
T ss_pred HHHHHHhCCCeeEEEeeeEEECCCCCEeccC---ccccc-CC---HHHHhhcccCCceEEEEHHHHHHhCCCCCcc--CC
Confidence 776542 22222223211 12111110 11111 00 0011123456788889988765442211122 24
Q ss_pred cchHHHHHHHhcCC
Q 018257 282 NEDVSLGSWFIGLD 295 (359)
Q Consensus 282 ~EDV~vG~~l~~l~ 295 (359)
.||.-+..-+...|
T Consensus 546 ~eD~dl~~r~~~~g 559 (625)
T 2z86_A 546 AVDYDMYLKLSEVG 559 (625)
T ss_dssp CHHHHHHHHHTTTS
T ss_pred hHHHHHHHHHHHhC
Confidence 69998877765554
No 10
>4hg6_A Cellulose synthase subunit A; membrane translocation, cellulose synthesis, UDP-GLC binding membrane, transferase; HET: BGC UDP LDA; 3.25A {Rhodobacter sphaeroides}
Probab=61.61 E-value=1.6e+02 Score=30.93 Aligned_cols=127 Identities=13% Similarity=-0.001 Sum_probs=68.2
Q ss_pred HHHHHHhcCCceEEEEeccceeeeHHHHHHHHhhcCCCCC--eeEEecc--c-CcccccCCCccccC-ccc-cccC--C-
Q 018257 178 YFATAVSMWDAEFYIKVDDDVHVNLATLGMTLAAHRTKPR--VYVGCMK--S-GPVLARKGVKYYEP-EYW-KFGE--I- 247 (359)
Q Consensus 178 ~~~wa~~~~~a~fvlKvDDDvfVn~~~L~~~L~~~~~~~~--ly~G~~~--~-~pv~r~~~~K~~~p-~~~-~f~~--p- 247 (359)
.+..+.+..+.+|++.+|+|+.+..+.|...+......++ +..|... + .+..+....-...+ +.. ++.. .
T Consensus 229 alN~gl~~a~gd~Il~lDaD~~~~pd~L~~lv~~~~~dp~v~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (802)
T 4hg6_A 229 NMSAALERLKGELVVVFDADHVPSRDFLARTVGYFVEDPDLFLVQTPHFFINPDPIQRNLALGDRCPPENEMFYGKIHRG 308 (802)
T ss_dssp HHHHHHHHCCCSEEEECCTTEEECTTHHHHHHHHHHHSSSCCEEECCCCBSSCCHHHHHHTCCTTSCCTTHHHHHTHHHH
T ss_pred HHHHHHHhcCCCEEEEECCCCCcChHHHHHHHHHHhcCCCeEEEeccEEEeCCchHhhhhhHHhhhhHHHHHHHHHHHhh
Confidence 3555555558899999999999999888888776532222 3323221 1 11111000000000 000 0000 0
Q ss_pred -CCccccccCCCeeeeCHHHHHHHHHhccccCCCCcchHHHHHHHhcCC--CeEecCCCcccC
Q 018257 248 -GNKYFRHATGQLYALSKDLATYISINQHLLHKYANEDVSLGSWFIGLD--VEHVDDRRLCCG 307 (359)
Q Consensus 248 -~~~Yp~y~~G~gYvlS~dla~~i~~~~~~l~~~~~EDV~vG~~l~~l~--v~~~~~~~f~~~ 307 (359)
...-.+++.|++.++.+++++.+---. .....||..++.-+...| +..+++......
T Consensus 309 ~~~~~~~~~~G~~~~~Rr~al~~vGgf~---~~~~~ED~~l~~rl~~~G~ri~~~~~~~~~~~ 368 (802)
T 4hg6_A 309 LDRWGGAFFCGSAAVLRRRALDEAGGFA---GETITEDAETALEIHSRGWKSLYIDRAMIAGL 368 (802)
T ss_dssp HHHTTCCCCCSSSEEEEHHHHHHHTTCC---CSSSSHHHHHHHHHHTTTCCEEECCCCCEEEC
T ss_pred HhhcCCceecccchhhhHHHHHHcCCcC---CCCcchHHHHHHHHHHcCCeEEEecCCEEEec
Confidence 000113467999999999998873211 122359999998886554 445555554443
No 11
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=47.93 E-value=19 Score=21.98 Aligned_cols=28 Identities=29% Similarity=0.469 Sum_probs=22.7
Q ss_pred HHHhHHHHHHHHHHhHHHHhhhhhhhhh
Q 018257 37 KLAMVEQAIQSQDKRLDGLKTKITAVRA 64 (359)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~le~el~~~~~ 64 (359)
|+..-.|.|-.+.|.|+.|+-|+|+.++
T Consensus 3 eiaalkqeiaalkkeiaalkfeiaalkq 30 (33)
T 4dzn_A 3 EIAALKQEIAALKKEIAALKFEIAALKQ 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4555677888999999999999998764
No 12
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=40.98 E-value=38 Score=20.70 Aligned_cols=26 Identities=27% Similarity=0.441 Sum_probs=20.3
Q ss_pred HHHHhHHHHHHHHHHhHHHHhhhhhh
Q 018257 36 EKLAMVEQAIQSQDKRLDGLKTKITA 61 (359)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~le~el~~ 61 (359)
++|-+-+-.+|++++++..||.-..+
T Consensus 6 e~~r~l~~ivq~lq~r~drle~tvqa 31 (32)
T 2akf_A 6 EDVRNLNAIVQKLQERLDRLEETVQA 31 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 46667777889999999999976543
No 13
>1fo8_A Alpha-1,3-mannosyl-glycoprotein beta-1,2-N- acetylglucosaminyltransferase; methylmercury derivative, N- acetylglucosaminyltransferase I; 1.40A {Oryctolagus cuniculus} SCOP: c.68.1.10 PDB: 1fo9_A 1foa_A* 2apc_A* 2am3_A* 2am4_A* 2am5_A*
Probab=36.03 E-value=77 Score=30.17 Aligned_cols=88 Identities=11% Similarity=0.033 Sum_probs=48.0
Q ss_pred HHHHHHHhcCCceEEEEeccceeeeHHHHHHH---HhhcCCCCCeeEEecccCcccccCCCccccCccccccCCCCcccc
Q 018257 177 TYFATAVSMWDAEFYIKVDDDVHVNLATLGMT---LAAHRTKPRVYVGCMKSGPVLARKGVKYYEPEYWKFGEIGNKYFR 253 (359)
Q Consensus 177 ~~~~wa~~~~~a~fvlKvDDDvfVn~~~L~~~---L~~~~~~~~ly~G~~~~~pv~r~~~~K~~~p~~~~f~~p~~~Yp~ 253 (359)
.++.++....++++++-+|||+.+.++-|.-+ |......++++.=+-.+.+....... -..+...|+ -.
T Consensus 89 ~al~~vf~~~~~~~vIiLEDDl~~spdF~~y~~~~l~~y~~D~~I~~ISa~n~~g~~~~~~-~~~~~~lyr-------s~ 160 (343)
T 1fo8_A 89 WALGQIFHNFNYPAAVVVEDDLEVAPDFFEYFQATYPLLKADPSLWCVSAWNDNGKEQMVD-SSKPELLYR-------TD 160 (343)
T ss_dssp HHHHHHHTTSCCSEEEEEETTEEECTTHHHHHHHHHHHHHHCTTEEEEESCCTTCBGGGSC-TTCTTCEEE-------ES
T ss_pred HHHHHHHHhccCCEEEEEcCCCeECHHHHHHHHHHHHHhhcCCcEEEEecccCcccccccc-ccCcceEEe-------ec
Confidence 45555555447999999999999999766443 33333456665211111111000000 011222232 22
Q ss_pred ccCCCeeeeCHHHHHHHHH
Q 018257 254 HATGQLYALSKDLATYISI 272 (359)
Q Consensus 254 y~~G~gYvlS~dla~~i~~ 272 (359)
|..|-|+++++++-+.+-.
T Consensus 161 ~f~~wGWa~wr~~W~e~~~ 179 (343)
T 1fo8_A 161 FFPGLGWLLLAELWAELEP 179 (343)
T ss_dssp SCCCSSEEEEHHHHHHHGG
T ss_pred CCCchhhhhcHHHHHHHhh
Confidence 4568899999999886643
No 14
>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}
Probab=35.80 E-value=40 Score=22.51 Aligned_cols=30 Identities=20% Similarity=0.243 Sum_probs=22.0
Q ss_pred chHHHHHHhHHHHHHHHHHhHHHHhhhhhhhhh
Q 018257 32 NNNTEKLAMVEQAIQSQDKRLDGLKTKITAVRA 64 (359)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~le~el~~~~~ 64 (359)
.|++.+++..|+ +++++|..||..|.+-..
T Consensus 8 ydlvsel~~r~e---~LE~Ri~~LE~KLd~L~~ 37 (43)
T 2pnv_A 8 YDMISDLNERSE---DFEKRIVTLETKLETLIG 37 (43)
T ss_dssp HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhH---HHHHHHHHHHHHHHHHHH
Confidence 467777765554 688899999988876554
No 15
>2c0n_A A197; thermophil protein, thermophilic virus, STIV, sulfolobus turreted ICOS virus; 1.86A {Sulfolobus turreted icosahedral virus}
Probab=31.82 E-value=2.7e+02 Score=24.60 Aligned_cols=133 Identities=11% Similarity=-0.002 Sum_probs=73.9
Q ss_pred HHHHHHhhcCCEEEecccccCcchhHHHHHHHHHHHhcCCceEEEEeccc---eeeeHHHHHHHHhhcCCCCCeeEEec-
Q 018257 148 AIDAEEKMHGDFLRLEHIEGYLELSAKTKTYFATAVSMWDAEFYIKVDDD---VHVNLATLGMTLAAHRTKPRVYVGCM- 223 (359)
Q Consensus 148 ~I~~E~~~~~Dil~~df~DsY~nLt~Kt~~~~~wa~~~~~a~fvlKvDDD---vfVn~~~L~~~L~~~~~~~~ly~G~~- 223 (359)
.|.....+.|==+++.+.++.-... .-.+.=.|+ ...++++++-+|.| +-.+++.+.++|.. ..++.+|..
T Consensus 16 ~l~~~l~~~gi~~~l~~~~SlI~ra-RN~lv~~Fl-~~~~~dhllfIDAD~~~I~FdPe~V~rLl~~---g~DVV~GsYp 90 (203)
T 2c0n_A 16 PLIDFLVKNDIEYVILSRRNHVAVQ-REIALDMFL-EMKDYDTLAFLDEDVVPIEIDFQKVEAKFNE---GYDVVCGYYY 90 (203)
T ss_dssp HHHHHHHHTTCCEEEECCCSCHHHH-HHHHHHHHH-HCTTCCEEEEECTTEEEEECCHHHHHHHHHH---TCSEEEEECB
T ss_pred HHHHHHHhCCCeEEEEccccchHHH-HHHHHHHHH-hcCCCCEEEEEeCCCCccccCHHHHHHHHhC---CCCEEEEEee
Confidence 4555555655555665553332211 111111233 35689999999999 99999999999964 346888874
Q ss_pred -ccCcccccCCCccccCccccccCCCCccccccCCCeeeeCHHHHHHHHHhcc------ccCCCCcchHHHHHHHh
Q 018257 224 -KSGPVLARKGVKYYEPEYWKFGEIGNKYFRHATGQLYALSKDLATYISINQH------LLHKYANEDVSLGSWFI 292 (359)
Q Consensus 224 -~~~pv~r~~~~K~~~p~~~~f~~p~~~Yp~y~~G~gYvlS~dla~~i~~~~~------~l~~~~~EDV~vG~~l~ 292 (359)
++..-.. ...+.|.-. +.+ .=-.||+.|.-+++|.+...|....- ..+..--|||++=.-+.
T Consensus 91 ~K~~~~~s-~~a~~y~~~---i~~---~~V~d~~tGF~lIkR~V~e~L~~p~fl~~~~~e~~~~~gEdv~F~~~~k 159 (203)
T 2c0n_A 91 LKTLRGYS-VYRKDWEKE---IFD---GEVNGCGLGFTFIKREFLEKIKRPAFLAFKPIESPHWIGEDVYFFSTHK 159 (203)
T ss_dssp CTTSSSBS-EESSSBCSS---CCC---EECSEECSSEEEEEHHHHTTSCSSCCCC---------CCHHHHHHHHHC
T ss_pred ccCCCccc-hHHHHHHHh---ccC---ceeeeccccEEEEhHHHHHHHhhhhhhcCChhhhccccCCceEEEeccc
Confidence 2211000 001112111 110 11246888889999999988855322 12223459998866554
No 16
>2z5i_A TM, general control protein GCN4 and tropomyosin alpha-1 chain; coiled coil, actin, troponin, cytoskeleton, cardiomyopathy; 2.10A {Saccharomyces cerevisiae} PDB: 2z5h_A 1kql_A 1mv4_A 2g9j_C
Probab=30.26 E-value=63 Score=22.26 Aligned_cols=26 Identities=19% Similarity=0.321 Sum_probs=20.4
Q ss_pred hHHHHHHHHHHhHHHHhhhhhhhhhc
Q 018257 40 MVEQAIQSQDKRLDGLKTKITAVRAE 65 (359)
Q Consensus 40 ~~~~~~~~~~~~~~~le~el~~~~~~ 65 (359)
-...-++.++|+|..||.+|...+..
T Consensus 9 fAERsV~KLek~ID~LEdeL~~eKek 34 (52)
T 2z5i_A 9 HLENEVARLKKLVDDLEDELYAQKLK 34 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 34556788999999999999887643
No 17
>2bo4_A Mannosylglycerate synthase; catalysis, glycosyltransferase, mannose, transferase, stereoselectivity; HET: FLC; 1.95A {Rhodothermus marinus} SCOP: c.68.1.18 PDB: 2bo6_A 2bo7_A* 2bo8_A* 2xw2_A 2y4j_A 2xw3_A* 2xw4_A* 2xw5_A* 2y4k_A* 2y4l_A* 2y4m_A*
Probab=29.44 E-value=2.3e+02 Score=27.27 Aligned_cols=163 Identities=9% Similarity=0.007 Sum_probs=84.3
Q ss_pred ceEEEEEeccCCCCCchhH--HHHHHHHh-hcCC-EEEecccc-c--CcchhHHHHHHHHHHHhcCCceEEEEecccee-
Q 018257 128 GIIIRFVIGHSATSGGILD--KAIDAEEK-MHGD-FLRLEHIE-G--YLELSAKTKTYFATAVSMWDAEFYIKVDDDVH- 199 (359)
Q Consensus 128 ~i~v~FvlG~s~~~~~~~~--~~I~~E~~-~~~D-il~~df~D-s--Y~nLt~Kt~~~~~wa~~~~~a~fvlKvDDDvf- 199 (359)
...+++|-+-|.+ .+.+ +.+..+.. .++. ++...... . -.....=...+|+||....+.++++-+|-|.-
T Consensus 28 ~~EIIVVDDGStD--~T~eia~~la~~~~~~~g~~vi~~~~~r~~~~n~GkG~Al~~G~~~Al~~a~gd~vv~mDADlq~ 105 (397)
T 2bo4_A 28 RVHEVLCIGYERD--QTYEAVERAAPEISRATGTPVSVRLQERLGTLRPGKGDGMNTALRYFLEETQWERIHFYDADITS 105 (397)
T ss_dssp TCCEEEEEESSCC--HHHHHHHHHHHHHHHHHSCCEEEEECCCCSSSSSSHHHHHHHHHHHHHHHCCCSEEEECCTTCSS
T ss_pred CeEEEEEECcCCc--cHHHHHHHhhhhcccccCCeEEEEecccCCCCCCCHHHHHHHHHHHHHHhCCCCEEEEEcCCCCC
Confidence 3568888887763 2222 22222333 3444 33332220 1 23345556778888873347899999999994
Q ss_pred eeHHHHHHHHhhcCCCCCeeEEecc---cCcccccCCCcc----ccCccccccCCCCccccccCCCeeeeCHHHHHHHHH
Q 018257 200 VNLATLGMTLAAHRTKPRVYVGCMK---SGPVLARKGVKY----YEPEYWKFGEIGNKYFRHATGQLYALSKDLATYISI 272 (359)
Q Consensus 200 Vn~~~L~~~L~~~~~~~~ly~G~~~---~~pv~r~~~~K~----~~p~~~~f~~p~~~Yp~y~~G~gYvlS~dla~~i~~ 272 (359)
.++.-+..++......-.+.+|... .+........+. +.+.. .........++.+++++++++.+..
T Consensus 106 ~~P~~i~~Ll~~l~~g~D~V~g~~~r~~~~~~~~~~~~~~ll~~~~~~~------~~~~i~dp~sG~~a~~R~vl~~l~~ 179 (397)
T 2bo4_A 106 FGPDWITKAEEAADFGYGLVRHYFPRASTDAMITWMITRTGFALLWPHT------ELSWIEQPLGGELLMRREVAAMLYE 179 (397)
T ss_dssp CCHHHHHHHHHHHHTTCSEEEEECCCCTTSCHHHHHTHHHHHHHHCTTS------SGGGCSCTTCCCEEEEHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHcCCCEEEEEeccccCCcHHHHHHHHHHHHHHHHHh------hccccccCCcccEEEeHHHHHHHhh
Confidence 7887777777654333356667532 111111111111 11100 0011222356778999999998854
Q ss_pred hc--cccCCCCcchHHHHHHH--hcCCCeEe
Q 018257 273 NQ--HLLHKYANEDVSLGSWF--IGLDVEHV 299 (359)
Q Consensus 273 ~~--~~l~~~~~EDV~vG~~l--~~l~v~~~ 299 (359)
.. .....|. .|+.+-..+ .|+.|..+
T Consensus 180 ~~~~~~~~~fg-~eiel~~~a~~~G~rI~EV 209 (397)
T 2bo4_A 180 DERVRRRSDWG-IDTLYTFVTVQQGVSIYEC 209 (397)
T ss_dssp CHHHHTCCSTT-HHHHHHHHHHHTTCCEEEE
T ss_pred hcccCcCCCcc-hHHHHHHHHHHcCCEEEEE
Confidence 21 1223333 466665544 35555433
No 18
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=28.26 E-value=65 Score=21.37 Aligned_cols=26 Identities=27% Similarity=0.394 Sum_probs=21.7
Q ss_pred hHHHHHHhHHHHHHHHHHhHHHHhhh
Q 018257 33 NNTEKLAMVEQAIQSQDKRLDGLKTK 58 (359)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~le~e 58 (359)
.|-.|+.+|.+-|-++++++..||..
T Consensus 13 kVdrEI~Kte~kI~~lqkKlkeLee~ 38 (42)
T 2l5g_B 13 RVDREITMVEQQISKLKKKQQQLEEE 38 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45568899999999999999998854
No 19
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=24.26 E-value=94 Score=20.36 Aligned_cols=26 Identities=38% Similarity=0.631 Sum_probs=17.5
Q ss_pred HHHhHHHHHHHHHHhHHHHhhhhhhh
Q 018257 37 KLAMVEQAIQSQDKRLDGLKTKITAV 62 (359)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~le~el~~~ 62 (359)
|+..-+..+|.++|+++.|...|.+-
T Consensus 21 elaaleselqalekklaalksklqal 46 (48)
T 1g6u_A 21 ELAALESELQALEKKLAALKSKLQAL 46 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44444566777888888887777653
No 20
>2lnd_A De novo designed protein, PFK fold; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=23.97 E-value=1.6e+02 Score=22.39 Aligned_cols=74 Identities=26% Similarity=0.280 Sum_probs=43.2
Q ss_pred EeCCCCCHHHHHHHHHHhhhcchhhhhhhccCceEEEEEeccCCCCCchhHHHHHHHHhhcCCEEEecccccCcchhHHH
Q 018257 96 INTAFSSRKRRDSVRATWMPQGEKRKMLEEAKGIIIRFVIGHSATSGGILDKAIDAEEKMHGDFLRLEHIEGYLELSAKT 175 (359)
Q Consensus 96 V~S~~~~~~rR~aIR~TW~~~~~~l~~l~~~~~i~v~FvlG~s~~~~~~~~~~I~~E~~~~~Dil~~df~DsY~nLt~Kt 175 (359)
|.|+.++.+-|+.|...= .+..-.++||-|.+.+. -...+.|+++-|=-.-.=-.-....||..+
T Consensus 31 irtatssqdirdiiksmk-----------dngkplvvfvngasqnd----vnefqneakkegvsydvlkstdpeeltqrv 95 (112)
T 2lnd_A 31 IRTATSSQDIRDIIKSMK-----------DNGKPLVVFVNGASQND----VNEFQNEAKKEGVSYDVLKSTDPEELTQRV 95 (112)
T ss_dssp EEEECSHHHHHHHHHHHT-----------TCCSCEEEEECSCCHHH----HHHHHHHHHHHTCEEEEEECCCHHHHHHHH
T ss_pred eeeccchhhHHHHHHHHH-----------hcCCeEEEEecCccccc----HHHHHHHHHhcCcchhhhccCCHHHHHHHH
Confidence 456666777777775431 12334588999988642 234556666554321111112345789999
Q ss_pred HHHHHHHHh
Q 018257 176 KTYFATAVS 184 (359)
Q Consensus 176 ~~~~~wa~~ 184 (359)
..+++.|-.
T Consensus 96 reflktags 104 (112)
T 2lnd_A 96 REFLKTAGS 104 (112)
T ss_dssp HHHHHHTTS
T ss_pred HHHHHhccc
Confidence 999988743
No 21
>1omz_A Alpha-1,4-N-acetylhexosaminyltransferase EXTL2; rossmann fold, DXD motif; HET: UD2; 2.10A {Mus musculus} SCOP: c.68.1.15 PDB: 1omx_A* 1on6_A* 1on8_A*
Probab=21.41 E-value=89 Score=29.23 Aligned_cols=39 Identities=18% Similarity=0.304 Sum_probs=32.6
Q ss_pred CCceEEEEeccceeeeHHHHHHHHhhcCCCCCeeEEecc
Q 018257 186 WDAEFYIKVDDDVHVNLATLGMTLAAHRTKPRVYVGCMK 224 (359)
Q Consensus 186 ~~a~fvlKvDDDvfVn~~~L~~~L~~~~~~~~ly~G~~~ 224 (359)
...+-|+-+|||+.++.+.|.......+..+.-.+|...
T Consensus 105 i~T~AVLslDDDv~l~~~el~faF~vWr~~PdRlVGf~~ 143 (293)
T 1omz_A 105 VETNAVLMVDDDTLISAQDLVFAFSIWQQFPDQIIGFVP 143 (293)
T ss_dssp CCSSEEEEECTTEEECHHHHHHHHHHHTTSTTSEEESCE
T ss_pred CCcCEEEEEcCCCCCCHHHHHHHHHHHHHCccceecCch
Confidence 478899999999999999998888877766666788863
Done!