Query 018257
Match_columns 359
No_of_seqs 281 out of 1264
Neff 6.5
Searched_HMMs 13730
Date Mon Mar 25 12:24:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018257.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/018257hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1xhba2 c.68.1.17 (A:95-422) P 87.7 5 0.00036 34.7 14.0 159 130-295 56-237 (328)
2 d1omza_ c.68.1.15 (A:) Alpha-1 67.9 5.7 0.00042 31.3 6.8 38 182-219 76-113 (265)
3 d1qg8a_ c.68.1.1 (A:) Spore co 54.3 13 0.00091 30.4 6.7 106 178-291 79-197 (255)
4 d2bo4a1 c.68.1.18 (A:2-382) Ma 22.4 65 0.0047 28.9 6.3 117 177-296 81-203 (381)
5 d1fo8a_ c.68.1.10 (A:) N-acety 18.0 1.1E+02 0.0077 27.1 6.6 88 174-272 82-179 (343)
6 d1umua_ b.87.1.1 (A:) UmuD' {E 13.8 29 0.0021 25.3 1.2 33 163-202 1-33 (105)
7 d2hy5a1 c.114.1.1 (A:1-130) Su 9.9 1.5E+02 0.011 21.6 4.4 41 91-138 2-43 (130)
8 d1p8ba_ g.3.6.4 (A:) Pab1, sub 9.0 22 0.0016 21.2 -0.8 10 329-338 2-11 (37)
9 d2d1pb1 c.114.1.1 (B:1-119) tR 8.6 1.5E+02 0.011 21.0 3.9 40 91-138 3-43 (119)
10 d1ju8a_ g.3.6.4 (A:) Leginsuli 8.3 28 0.0021 20.7 -0.5 10 329-338 2-11 (37)
No 1
>d1xhba2 c.68.1.17 (A:95-422) Polypeptide N-acetylgalactosaminyltransferase 1, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=87.72 E-value=5 Score=34.69 Aligned_cols=159 Identities=13% Similarity=0.103 Sum_probs=81.3
Q ss_pred EEEEEeccCCCCCchhHHHHHHHHhhcCCEEE-ecccccCcchhHHHHHHHHHHHhcCCceEEEEeccceeeeHHHHHHH
Q 018257 130 IIRFVIGHSATSGGILDKAIDAEEKMHGDFLR-LEHIEGYLELSAKTKTYFATAVSMWDAEFYIKVDDDVHVNLATLGMT 208 (359)
Q Consensus 130 ~v~FvlG~s~~~~~~~~~~I~~E~~~~~Dil~-~df~DsY~nLt~Kt~~~~~wa~~~~~a~fvlKvDDDvfVn~~~L~~~ 208 (359)
.++.|-.-|. +++....+++-.+.+.+-+. +....+. .++ .+...+.+....+|++.+|+|+.+..+.|..+
T Consensus 56 EIIvVDdgS~--d~~~~~~l~~~~~~~~~~i~vi~~~~n~-G~~----~a~N~Gi~~a~gd~i~flD~D~~~~p~~l~~l 128 (328)
T d1xhba2 56 EIVLVDDASE--RDFLKRPLESYVKKLKVPVHVIRMEQRS-GLI----RARLKGAAVSRGQVITFLDAHCECTAGWLEPL 128 (328)
T ss_dssp EEEEEECSCC--CGGGTHHHHHHHHSSSSCEEEEECSSCC-CHH----HHHHHHHHHCCSSEEEEEESSEEECTTCHHHH
T ss_pred EEEEEECCCC--hhhHHHHHHHHHHhcCCCeEEEEecccc-cch----HHHHHHHHhhhcceeeecCcccccChhHHHHH
Confidence 4555554443 34444455544555555333 3322221 222 23455555568899999999999999887776
Q ss_pred HhhcCCCCCe-eEEecc--c---------CcccccC-----CCccc-cCccc---cccC-CCCccccccCCCeeeeCHHH
Q 018257 209 LAAHRTKPRV-YVGCMK--S---------GPVLARK-----GVKYY-EPEYW---KFGE-IGNKYFRHATGQLYALSKDL 266 (359)
Q Consensus 209 L~~~~~~~~l-y~G~~~--~---------~pv~r~~-----~~K~~-~p~~~---~f~~-p~~~Yp~y~~G~gYvlS~dl 266 (359)
+......+.. ..|.+. . .+..+.. ...|+ .|... ...+ .....-+++.|+++++++++
T Consensus 129 ~~~~~~~~~~~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~irr~~ 208 (328)
T d1xhba2 129 LARIKHDRRTVVCPIIDVISDDTFEYMAGSDMTYGGFNWKLNFRWYPVPQREMDRRKGDRTLPVRTPTMAGGLFSIDRDY 208 (328)
T ss_dssp HHHHHHCTTEEEEEEEEEECSSSCCEECCCTTEEEEECTTCCEEEEECCHHHHHHTTTCTTSCEECSBCCSSSEEEEHHH
T ss_pred HHHHhcCCCeEEecceeeeccCceeeccCCccccccccccccccccccchhhhhccccccccccccceecceeeeeeHHH
Confidence 6554322222 222211 0 0110000 00111 11100 0000 01122346789999999999
Q ss_pred HHHHHHhccccCCCCcchHHHHHHHhcCC
Q 018257 267 ATYISINQHLLHKYANEDVSLGSWFIGLD 295 (359)
Q Consensus 267 a~~i~~~~~~l~~~~~EDV~vG~~l~~l~ 295 (359)
...+----..+..+..||+-++.-+...|
T Consensus 209 f~~vGgfDe~~~~~g~ED~Dl~~R~~~~G 237 (328)
T d1xhba2 209 FQEIGTYDAGMDIWGGENLEISFRIWQCG 237 (328)
T ss_dssp HHHTTSCCTTSCTTCCCCSHHHHHHHHTT
T ss_pred HHHhCCCCCCCcCcCchHHHHHHHHHHhC
Confidence 98874433344445579988877665554
No 2
>d1omza_ c.68.1.15 (A:) Alpha-1,4-N-acetylhexosaminyltransferase (Alpha-GalNAcT EXTL2) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=67.91 E-value=5.7 Score=31.27 Aligned_cols=38 Identities=16% Similarity=0.213 Sum_probs=29.6
Q ss_pred HHhcCCceEEEEeccceeeeHHHHHHHHhhcCCCCCee
Q 018257 182 AVSMWDAEFYIKVDDDVHVNLATLGMTLAAHRTKPRVY 219 (359)
Q Consensus 182 a~~~~~a~fvlKvDDDvfVn~~~L~~~L~~~~~~~~ly 219 (359)
+.+..+.+|++.+|||..+..+.|...++.....+...
T Consensus 76 ~~~~a~ge~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~ 113 (265)
T d1omza_ 76 VFPEVETNAVLMVDDDTLISAQDLVFAFSIWQQFPDQI 113 (265)
T ss_dssp CCTTCCSSEEEEECTTEEECHHHHHHHHHHHTTSTTSE
T ss_pred hHHhCCcCEEEEeCcccCCCHHHHHHHHHHHHhCCCcc
Confidence 33445789999999999999999999888776544433
No 3
>d1qg8a_ c.68.1.1 (A:) Spore coat polysaccharide biosynthesis protein SpsA {Bacillus subtilis [TaxId: 1423]}
Probab=54.28 E-value=13 Score=30.41 Aligned_cols=106 Identities=10% Similarity=-0.059 Sum_probs=57.0
Q ss_pred HHHHHHhcCCceEEEEeccceeeeHHHHHHHHhhcC--CCCCeeEEecc-----c-CcccccCCCccccCccccccCCCC
Q 018257 178 YFATAVSMWDAEFYIKVDDDVHVNLATLGMTLAAHR--TKPRVYVGCMK-----S-GPVLARKGVKYYEPEYWKFGEIGN 249 (359)
Q Consensus 178 ~~~wa~~~~~a~fvlKvDDDvfVn~~~L~~~L~~~~--~~~~ly~G~~~-----~-~pv~r~~~~K~~~p~~~~f~~p~~ 249 (359)
++..+.+..+.+|++.+|+|.++..+.|...++... +.-.++.|... . +.... +...+.... ..
T Consensus 79 a~N~gi~~a~g~~i~~lD~Dd~~~p~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~----~~~~~~~~~----~~ 150 (255)
T d1qg8a_ 79 LINQAIEMAEGEYITYATDDNIYMPDRLLKMVRELDTHPEKAVIYSASKTYHLNENRDIVK----ETVRPAAQV----TW 150 (255)
T ss_dssp HHHHHHHHCCCSEEEEEETTEEECTTHHHHHHHHHHHCTTCCEEEEEEEEEEEC---CEEE----EEEECCCSC----BS
T ss_pred cccccccccccccccccccccccccchHHHHHHHHHhCCCCCeEeecceeeeeCCCCcEee----eecccchhh----hh
Confidence 344555544789999999999999776666555432 33344433321 1 11111 111111111 01
Q ss_pred ccccccCCCeeeeCHHHHHHHHHhcc-----ccCCCCcchHHHHHHH
Q 018257 250 KYFRHATGQLYALSKDLATYISINQH-----LLHKYANEDVSLGSWF 291 (359)
Q Consensus 250 ~Yp~y~~G~gYvlS~dla~~i~~~~~-----~l~~~~~EDV~vG~~l 291 (359)
..+....+++.++++++++.+..... .......||..+..-+
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~dl~lrl 197 (255)
T d1qg8a_ 151 NAPCAIDHCSVMHRYSVLEKVKEKFGSYWDESPAFYRIGDARFFWRV 197 (255)
T ss_dssp CCTTTSCGGGEEEETHHHHHHHHHHSSSSCCCGGGSTTHHHHHHHHH
T ss_pred hhcccccchhHHHHHHHHHHHHHhhCCCccccchhcchhhHHHHHHH
Confidence 22223456778999999999876422 2223457888776544
No 4
>d2bo4a1 c.68.1.18 (A:2-382) Mannosylglycerate synthase, MGS {Rhodothermus marinus [TaxId: 29549]}
Probab=22.43 E-value=65 Score=28.90 Aligned_cols=117 Identities=8% Similarity=-0.071 Sum_probs=65.7
Q ss_pred HHHHHHHhcCCceEEEEeccce-eeeHHHHHHHHhhcCCCCCeeEEecc----cCcccccCCCccccCccccccCCCCcc
Q 018257 177 TYFATAVSMWDAEFYIKVDDDV-HVNLATLGMTLAAHRTKPRVYVGCMK----SGPVLARKGVKYYEPEYWKFGEIGNKY 251 (359)
Q Consensus 177 ~~~~wa~~~~~a~fvlKvDDDv-fVn~~~L~~~L~~~~~~~~ly~G~~~----~~pv~r~~~~K~~~p~~~~f~~p~~~Y 251 (359)
.++.++....+.++++.+|.|. -.++.-+..++......-.+-+|+.. .|.+.+.-..++.- .++ +--...-
T Consensus 81 ~A~~~g~~~a~gd~lvflDADl~~~~pe~i~~L~~~i~~g~d~V~g~y~R~~~~grvt~~l~~pll~--~l~-~~~~~~~ 157 (381)
T d2bo4a1 81 TALRYFLEETQWERIHFYDADITSFGPDWITKAEEAADFGYGLVRHYFPRASTDAMITWMITRTGFA--LLW-PHTELSW 157 (381)
T ss_dssp HHHHHHHHHCCCSEEEECCTTCSSCCHHHHHHHHHHHHTTCSEEEEECCCCTTSCHHHHHTHHHHHH--HHC-TTSSGGG
T ss_pred HHHHHHHHhCCCCEEEEEcCCcCcCCHHHHHHHHHHHhhhcCeEEEeeccccCCCceehHhhHHHHH--HHh-hhhcccc
Confidence 3566666667899999999997 56676666666655444566677642 12222111111211 000 0000111
Q ss_pred ccccCCCeeeeCHHHHHHHHHhcccc-CCCCcchHHHHHHHhcCCC
Q 018257 252 FRHATGQLYALSKDLATYISINQHLL-HKYANEDVSLGSWFIGLDV 296 (359)
Q Consensus 252 p~y~~G~gYvlS~dla~~i~~~~~~l-~~~~~EDV~vG~~l~~l~v 296 (359)
+....||-++++++++..+....... ..=.-=|+.+...+..+|+
T Consensus 158 i~dPl~G~~a~~R~~~~~L~~~~~v~~~~~~G~Di~lt~~A~~~G~ 203 (381)
T d2bo4a1 158 IEQPLGGELLMRREVAAMLYEDERVRRRSDWGIDTLYTFVTVQQGV 203 (381)
T ss_dssp CSCTTCCCEEEEHHHHHHHHHCHHHHTCCSTTHHHHHHHHHHHTTC
T ss_pred cccCCcccceeeHHHHHHhhhhccccccCCcccchHHHHHHHHcCC
Confidence 33456889999999999998754321 1112446777666654443
No 5
>d1fo8a_ c.68.1.10 (A:) N-acetylglucosaminyltransferase I {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}
Probab=18.02 E-value=1.1e+02 Score=27.08 Aligned_cols=88 Identities=15% Similarity=0.150 Sum_probs=49.2
Q ss_pred HHHHHHHHHHh----cCCceEEEEeccceeeeHHHHHH---HHhhcCCCCCeeEEecc---cCcccccCCCccccCcccc
Q 018257 174 KTKTYFATAVS----MWDAEFYIKVDDDVHVNLATLGM---TLAAHRTKPRVYVGCMK---SGPVLARKGVKYYEPEYWK 243 (359)
Q Consensus 174 Kt~~~~~wa~~----~~~a~fvlKvDDDvfVn~~~L~~---~L~~~~~~~~ly~G~~~---~~pv~r~~~~K~~~p~~~~ 243 (359)
+...-+.||.+ ..+++.++-+.||+.+.++-|.- .|..+...++++.=+=. +.....+.. -|...|
T Consensus 82 giarhy~~AL~~~F~~~~~~~~IiLEDDl~~spdFf~y~~~~l~~~~~D~~i~~IS~wNdnG~~~~~~~~----~~~~ly 157 (343)
T d1fo8a_ 82 KIARHYRWALGQIFHNFNYPAAVVVEDDLEVAPDFFEYFQATYPLLKADPSLWCVSAWNDNGKEQMVDSS----KPELLY 157 (343)
T ss_dssp HHHHHHHHHHHHHHTTSCCSEEEEEETTEEECTTHHHHHHHHHHHHHHCTTEEEEESCCTTCBGGGSCTT----CTTCEE
T ss_pred HHHHHHHHHHHHHhcccCCceEEEEecCceeeHHHHHHHHHHHHHHhcCCCEEEEeccccCCCcccccCC----CCceEE
Confidence 44344455543 34678999999999999876643 33333445666632211 111111111 122233
Q ss_pred ccCCCCccccccCCCeeeeCHHHHHHHHH
Q 018257 244 FGEIGNKYFRHATGQLYALSKDLATYISI 272 (359)
Q Consensus 244 f~~p~~~Yp~y~~G~gYvlS~dla~~i~~ 272 (359)
+. .|..|-|+++++++=+.|..
T Consensus 158 rs-------~~fpg~GW~~~r~~W~el~~ 179 (343)
T d1fo8a_ 158 RT-------DFFPGLGWLLLAELWAELEP 179 (343)
T ss_dssp EE-------SSCCCSSEEEEHHHHHHHGG
T ss_pred ee-------cCCCchhhheeHHHHHHhhh
Confidence 21 23568999999999876654
No 6
>d1umua_ b.87.1.1 (A:) UmuD' {Escherichia coli [TaxId: 562]}
Probab=13.77 E-value=29 Score=25.28 Aligned_cols=33 Identities=15% Similarity=0.329 Sum_probs=24.1
Q ss_pred cccccCcchhHHHHHHHHHHHhcCCceEEEEeccceeeeH
Q 018257 163 EHIEGYLELSAKTKTYFATAVSMWDAEFYIKVDDDVHVNL 202 (359)
Q Consensus 163 df~DsY~nLt~Kt~~~~~wa~~~~~a~fvlKvDDDvfVn~ 202 (359)
|+.|.+-+|. ++...++.+.|++|+..|.+.+.
T Consensus 1 DyiE~~i~l~-------~~lv~~~~~~f~~rV~GdSM~~~ 33 (105)
T d1umua_ 1 DYVEQRIDLN-------QLLIQHPSATYFVKASGDSMIDG 33 (105)
T ss_dssp CCCCCCCCHH-------HHHCSCGGGEEEEECCSSTTGGG
T ss_pred CccccccChh-------HHhccCCCceEEEEEcCCccccC
Confidence 4566666655 44566788999999999987654
No 7
>d2hy5a1 c.114.1.1 (A:1-130) Sulfurtransferase DsrE {Chromatium vinosum [TaxId: 1049]}
Probab=9.90 E-value=1.5e+02 Score=21.63 Aligned_cols=41 Identities=15% Similarity=0.186 Sum_probs=25.3
Q ss_pred eEEEEEeCCCCCH-HHHHHHHHHhhhcchhhhhhhccCceEEEEEeccC
Q 018257 91 FMVIGINTAFSSR-KRRDSVRATWMPQGEKRKMLEEAKGIIIRFVIGHS 138 (359)
Q Consensus 91 ~lli~V~S~~~~~-~rR~aIR~TW~~~~~~l~~l~~~~~i~v~FvlG~s 138 (359)
.++|+|.++|... .-+.++| .+... +..+..|..+|+.|..
T Consensus 2 k~~i~v~~~P~~~~~a~~al~--fA~aa-----l~~gh~V~~vFf~~dG 43 (130)
T d2hy5a1 2 KFALQINEGPYQHQASDSAYQ--FAKAA-----LEKGHEIFRVFFYHDG 43 (130)
T ss_dssp EEEEEECSCTTTSTHHHHHHH--HHHHH-----HHTTCEEEEEEECGGG
T ss_pred EEEEEEcCCCCCcHHHHHHHH--HHHHH-----HHCCCeEEEEEEecch
Confidence 4678889998644 4577777 33332 3345667667887643
No 8
>d1p8ba_ g.3.6.4 (A:) Pab1, subunit b {Garden pea (Pisum sativum) [TaxId: 3888]}
Probab=8.97 E-value=22 Score=21.22 Aligned_cols=10 Identities=40% Similarity=1.252 Sum_probs=7.6
Q ss_pred cccccchhhH
Q 018257 329 RCSGICKSVE 338 (359)
Q Consensus 329 ~~~g~~~~~~ 338 (359)
.|+|+|.+++
T Consensus 2 ~C~G~CSPFe 11 (37)
T d1p8ba_ 2 SCNGVCSPFE 11 (37)
T ss_dssp CCEEEECTTC
T ss_pred cccccccccc
Confidence 4888988764
No 9
>d2d1pb1 c.114.1.1 (B:1-119) tRNA 2-thiouridine synthesizing protein C, TusC {Escherichia coli [TaxId: 562]}
Probab=8.59 E-value=1.5e+02 Score=21.02 Aligned_cols=40 Identities=15% Similarity=0.160 Sum_probs=27.0
Q ss_pred eEEEEEeCCCCC-HHHHHHHHHHhhhcchhhhhhhccCceEEEEEeccC
Q 018257 91 FMVIGINTAFSS-RKRRDSVRATWMPQGEKRKMLEEAKGIIIRFVIGHS 138 (359)
Q Consensus 91 ~lli~V~S~~~~-~~rR~aIR~TW~~~~~~l~~l~~~~~i~v~FvlG~s 138 (359)
.++|++.++|.. ..-|.++|-..+-.. .+..|. +|+.|..
T Consensus 3 kv~ii~~~~P~~~~~~~~al~~Ala~a~-------~~~~V~-iff~~dG 43 (119)
T d2d1pb1 3 RIAFVFSTAPHGTAAGREGLDALLATSA-------LTDDLA-VFFIADG 43 (119)
T ss_dssp CEEEEECSCTTTSTHHHHHHHHHHHHHT-------TCSCEE-EEECGGG
T ss_pred EEEEEEcCCCCCcHHHHHHHHHHHHHHh-------CCCCEE-EEEechH
Confidence 377888888865 455889998887653 245665 5666643
No 10
>d1ju8a_ g.3.6.4 (A:) Leginsulin {Soybean (Glycine max) [TaxId: 3847]}
Probab=8.28 E-value=28 Score=20.68 Aligned_cols=10 Identities=40% Similarity=1.119 Sum_probs=7.5
Q ss_pred cccccchhhH
Q 018257 329 RCSGICKSVE 338 (359)
Q Consensus 329 ~~~g~~~~~~ 338 (359)
.|+|+|.+++
T Consensus 2 ~C~G~CspFe 11 (37)
T d1ju8a_ 2 DCNGACSPFE 11 (37)
T ss_dssp CSCSEECSSS
T ss_pred Cccccccccc
Confidence 4888888764
Done!