Query 018258
Match_columns 359
No_of_seqs 125 out of 155
Neff 4.6
Searched_HMMs 46136
Date Fri Mar 29 07:28:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018258.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018258hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF09728 Taxilin: Myosin-like 100.0 1.8E-73 3.8E-78 553.7 36.1 282 63-344 21-309 (309)
2 KOG1850 Myosin-like coiled-coi 100.0 8.8E-59 1.9E-63 447.3 38.3 273 74-347 35-318 (391)
3 COG1196 Smc Chromosome segrega 97.6 0.26 5.6E-06 56.5 39.0 103 235-337 826-928 (1163)
4 TIGR02169 SMC_prok_A chromosom 97.4 0.33 7.2E-06 54.0 39.8 25 85-109 674-698 (1164)
5 TIGR02169 SMC_prok_A chromosom 97.3 0.49 1.1E-05 52.7 39.0 68 263-330 425-492 (1164)
6 TIGR02168 SMC_prok_B chromosom 97.0 0.79 1.7E-05 50.8 38.5 19 89-107 674-692 (1179)
7 TIGR02168 SMC_prok_B chromosom 97.0 0.84 1.8E-05 50.6 40.0 25 85-109 677-701 (1179)
8 PF07888 CALCOCO1: Calcium bin 97.0 0.71 1.5E-05 49.4 35.2 36 309-344 387-423 (546)
9 KOG0161 Myosin class II heavy 96.4 3.8 8.3E-05 49.8 38.0 156 156-314 936-1097(1930)
10 TIGR00606 rad50 rad50. This fa 96.3 3.1 6.8E-05 48.5 37.2 101 244-346 984-1086(1311)
11 KOG1029 Endocytic adaptor prot 96.3 2.6 5.7E-05 47.0 28.6 103 216-325 416-518 (1118)
12 PF05483 SCP-1: Synaptonemal c 96.2 2.6 5.7E-05 46.3 37.6 108 236-343 533-644 (786)
13 KOG0161 Myosin class II heavy 96.1 5 0.00011 48.9 38.2 186 140-325 945-1143(1930)
14 PF13851 GAS: Growth-arrest sp 95.9 0.61 1.3E-05 43.6 16.4 118 80-211 57-177 (201)
15 PF09728 Taxilin: Myosin-like 95.9 2.1 4.5E-05 42.6 32.2 58 83-140 34-91 (309)
16 KOG2008 BTK-associated SH3-dom 95.3 3.7 8.1E-05 41.6 26.6 192 152-346 20-233 (426)
17 PF00261 Tropomyosin: Tropomyo 95.0 3.3 7.3E-05 39.2 29.7 70 244-313 162-231 (237)
18 KOG4674 Uncharacterized conser 95.0 12 0.00026 45.5 34.7 207 91-312 1159-1386(1822)
19 COG1196 Smc Chromosome segrega 94.9 9.9 0.00022 44.0 38.9 61 249-309 388-448 (1163)
20 KOG0933 Structural maintenance 94.4 12 0.00026 43.0 33.0 188 124-319 738-939 (1174)
21 PF07888 CALCOCO1: Calcium bin 93.6 13 0.00027 40.2 33.9 14 333-346 380-393 (546)
22 PF13870 DUF4201: Domain of un 93.6 5.4 0.00012 36.0 21.6 156 177-341 13-172 (177)
23 PF00038 Filament: Intermediat 93.5 7.5 0.00016 37.6 30.7 80 254-333 191-274 (312)
24 PRK04778 septation ring format 93.0 14 0.00031 39.4 27.0 39 233-271 400-438 (569)
25 PF09755 DUF2046: Uncharacteri 92.8 12 0.00025 37.8 29.0 33 323-355 180-212 (310)
26 KOG0980 Actin-binding protein 92.7 21 0.00046 40.5 27.1 50 285-334 493-542 (980)
27 PRK11637 AmiB activator; Provi 92.4 15 0.00031 37.7 29.8 27 83-109 45-71 (428)
28 KOG0996 Structural maintenance 92.0 30 0.00065 40.5 32.7 87 234-320 953-1039(1293)
29 PF00038 Filament: Intermediat 91.5 14 0.00031 35.7 35.1 242 79-330 48-306 (312)
30 PF15070 GOLGA2L5: Putative go 91.2 26 0.00057 38.3 34.0 212 97-320 2-236 (617)
31 KOG0978 E3 ubiquitin ligase in 90.9 30 0.00066 38.4 32.0 28 182-209 466-493 (698)
32 PF04849 HAP1_N: HAP1 N-termin 90.8 19 0.00042 36.2 19.1 138 119-278 166-303 (306)
33 PRK03918 chromosome segregatio 90.4 32 0.0007 37.9 38.0 22 146-167 449-470 (880)
34 KOG2129 Uncharacterized conser 90.3 21 0.00045 37.7 17.0 60 284-343 206-275 (552)
35 KOG0996 Structural maintenance 90.2 45 0.00097 39.2 35.4 67 272-338 542-608 (1293)
36 KOG0612 Rho-associated, coiled 90.0 46 0.001 39.2 29.9 180 117-304 462-662 (1317)
37 PF05557 MAD: Mitotic checkpoi 89.8 0.095 2.1E-06 57.0 0.0 60 279-342 250-309 (722)
38 PF04156 IncA: IncA protein; 89.8 15 0.00032 33.1 16.7 86 251-336 102-187 (191)
39 PRK02224 chromosome segregatio 89.6 38 0.00082 37.5 34.8 51 76-127 147-198 (880)
40 KOG4674 Uncharacterized conser 89.4 62 0.0013 39.7 37.3 227 80-307 649-893 (1822)
41 PLN03229 acetyl-coenzyme A car 87.8 53 0.0011 36.9 20.3 82 110-198 480-579 (762)
42 KOG0250 DNA repair protein RAD 86.8 69 0.0015 37.3 30.0 215 81-312 657-890 (1074)
43 PRK11637 AmiB activator; Provi 86.5 41 0.00089 34.4 26.8 76 268-343 180-255 (428)
44 KOG0971 Microtubule-associated 86.3 71 0.0015 36.9 38.3 58 258-315 475-533 (1243)
45 TIGR03752 conj_TIGR03752 integ 86.0 9 0.00019 40.6 11.5 70 275-344 69-139 (472)
46 KOG0978 E3 ubiquitin ligase in 85.9 64 0.0014 36.0 31.1 62 241-309 563-624 (698)
47 KOG0946 ER-Golgi vesicle-tethe 85.7 71 0.0015 36.4 25.3 199 143-347 651-881 (970)
48 PF12777 MT: Microtubule-bindi 84.9 4.6 0.0001 40.3 8.6 91 247-337 224-314 (344)
49 PRK02224 chromosome segregatio 84.9 69 0.0015 35.5 38.2 46 257-302 645-690 (880)
50 TIGR00606 rad50 rad50. This fa 84.8 90 0.002 36.8 38.5 53 260-312 972-1024(1311)
51 TIGR03185 DNA_S_dndD DNA sulfu 83.0 75 0.0016 34.5 31.6 47 252-298 422-468 (650)
52 PF12128 DUF3584: Protein of u 82.8 1.1E+02 0.0023 36.0 38.5 98 246-344 437-534 (1201)
53 PF08614 ATG16: Autophagy prot 82.7 12 0.00025 34.5 9.7 86 261-346 91-176 (194)
54 PF08317 Spc7: Spc7 kinetochor 82.7 54 0.0012 32.6 29.3 83 115-205 70-152 (325)
55 PHA02562 46 endonuclease subun 82.6 65 0.0014 33.5 32.4 29 274-302 346-374 (562)
56 COG1340 Uncharacterized archae 81.4 63 0.0014 32.5 34.3 202 102-303 30-259 (294)
57 KOG0977 Nuclear envelope prote 81.3 86 0.0019 34.1 17.7 68 105-172 189-265 (546)
58 PF09789 DUF2353: Uncharacteri 81.0 67 0.0015 32.6 15.0 121 223-343 19-155 (319)
59 PF13851 GAS: Growth-arrest sp 80.9 49 0.0011 31.0 24.5 139 149-315 2-143 (201)
60 KOG0250 DNA repair protein RAD 80.5 1.2E+02 0.0027 35.4 32.1 163 151-314 311-485 (1074)
61 PF05667 DUF812: Protein of un 80.5 94 0.002 34.0 31.3 81 254-341 487-567 (594)
62 PRK01156 chromosome segregatio 80.3 1E+02 0.0023 34.4 32.1 59 253-311 669-727 (895)
63 KOG0018 Structural maintenance 79.8 1.3E+02 0.0029 35.2 23.0 44 16-60 21-64 (1141)
64 KOG0977 Nuclear envelope prote 79.6 99 0.0021 33.6 27.9 55 255-309 272-333 (546)
65 PF01576 Myosin_tail_1: Myosin 78.9 0.64 1.4E-05 52.1 0.0 63 284-346 375-444 (859)
66 KOG0018 Structural maintenance 78.7 1.4E+02 0.0031 35.0 24.4 60 152-219 735-796 (1141)
67 PF10498 IFT57: Intra-flagella 78.4 84 0.0018 32.2 15.4 108 181-289 245-352 (359)
68 KOG4643 Uncharacterized coiled 78.0 1.5E+02 0.0032 34.8 31.3 51 78-135 285-337 (1195)
69 KOG4083 Head-elevated expressi 77.2 20 0.00043 33.8 9.2 71 102-172 76-146 (192)
70 PF01576 Myosin_tail_1: Myosin 76.8 0.79 1.7E-05 51.3 0.0 100 113-217 145-249 (859)
71 PRK04863 mukB cell division pr 75.5 2E+02 0.0043 35.0 34.2 42 296-337 561-602 (1486)
72 PF05622 HOOK: HOOK protein; 75.4 0.91 2E-05 49.6 0.0 188 113-303 319-526 (713)
73 PF04111 APG6: Autophagy prote 74.9 81 0.0018 31.5 13.5 58 279-336 78-135 (314)
74 PF08614 ATG16: Autophagy prot 74.5 48 0.001 30.5 11.1 65 238-302 117-181 (194)
75 KOG4593 Mitotic checkpoint pro 74.3 1.5E+02 0.0033 33.1 35.1 52 265-320 268-319 (716)
76 PF05622 HOOK: HOOK protein; 74.2 1 2.2E-05 49.2 0.0 68 239-310 327-394 (713)
77 KOG0612 Rho-associated, coiled 74.2 2E+02 0.0043 34.4 30.0 27 112-138 507-533 (1317)
78 TIGR03513 GldL_gliding gliding 73.9 85 0.0018 30.0 14.5 93 248-340 103-198 (202)
79 PF10458 Val_tRNA-synt_C: Valy 73.2 22 0.00048 27.3 7.3 28 277-304 2-29 (66)
80 PF04156 IncA: IncA protein; 72.8 72 0.0016 28.7 16.9 12 267-278 111-122 (191)
81 PF05557 MAD: Mitotic checkpoi 72.7 3.9 8.5E-05 44.7 4.0 103 234-343 403-532 (722)
82 PF10174 Cast: RIM-binding pro 72.0 1.8E+02 0.0039 33.0 31.6 18 112-129 283-300 (775)
83 PF10174 Cast: RIM-binding pro 71.6 1.8E+02 0.004 32.9 36.3 98 248-345 469-586 (775)
84 KOG0946 ER-Golgi vesicle-tethe 71.6 1.9E+02 0.0042 33.1 25.5 33 285-317 847-879 (970)
85 PF12325 TMF_TATA_bd: TATA ele 70.1 57 0.0012 28.5 9.8 64 279-342 16-82 (120)
86 PF05701 WEMBL: Weak chloropla 69.7 1.6E+02 0.0035 31.4 37.1 85 238-322 243-331 (522)
87 PRK10884 SH3 domain-containing 69.7 99 0.0021 29.3 12.1 14 260-273 120-133 (206)
88 PF06005 DUF904: Protein of un 69.5 56 0.0012 26.1 10.8 61 259-326 5-65 (72)
89 KOG0995 Centromere-associated 69.3 78 0.0017 34.5 12.5 65 280-344 253-317 (581)
90 KOG3478 Prefoldin subunit 6, K 68.8 82 0.0018 27.7 11.6 46 89-138 2-47 (120)
91 PF05278 PEARLI-4: Arabidopsis 68.6 1E+02 0.0023 30.6 12.4 62 273-334 201-262 (269)
92 PF06005 DUF904: Protein of un 68.1 60 0.0013 25.9 10.4 63 270-332 2-64 (72)
93 PF05010 TACC: Transforming ac 66.6 1.2E+02 0.0026 28.9 29.1 96 236-341 103-202 (207)
94 KOG0976 Rho/Rac1-interacting s 66.3 2.5E+02 0.0055 32.4 34.2 71 242-312 268-342 (1265)
95 PF07989 Microtub_assoc: Micro 66.1 63 0.0014 25.9 8.6 60 283-342 4-71 (75)
96 PF10224 DUF2205: Predicted co 65.9 50 0.0011 27.1 8.1 41 152-192 26-66 (80)
97 PF12718 Tropomyosin_1: Tropom 65.8 98 0.0021 27.5 20.3 52 253-304 82-133 (143)
98 PF12128 DUF3584: Protein of u 65.4 2.8E+02 0.0061 32.6 36.9 68 242-309 814-881 (1201)
99 PF13863 DUF4200: Domain of un 65.2 82 0.0018 26.4 16.2 65 199-264 50-114 (126)
100 COG1579 Zn-ribbon protein, pos 62.1 1.6E+02 0.0035 28.7 15.3 96 247-342 48-145 (239)
101 PF07926 TPR_MLP1_2: TPR/MLP1/ 61.7 1.1E+02 0.0023 26.6 18.5 30 275-304 101-130 (132)
102 PF02183 HALZ: Homeobox associ 61.7 26 0.00056 25.6 5.2 41 289-329 1-41 (45)
103 PF00261 Tropomyosin: Tropomyo 59.6 1.6E+02 0.0035 27.9 30.0 93 237-329 134-226 (237)
104 PRK02119 hypothetical protein; 59.4 89 0.0019 24.9 9.0 53 280-346 3-55 (73)
105 KOG1962 B-cell receptor-associ 58.3 1E+02 0.0022 29.7 10.0 50 274-323 160-209 (216)
106 PF14662 CCDC155: Coiled-coil 57.8 1.8E+02 0.0038 27.7 24.5 141 123-268 11-154 (193)
107 cd07429 Cby_like Chibby, a nuc 57.4 28 0.0006 30.1 5.5 35 279-317 72-106 (108)
108 PF10168 Nup88: Nuclear pore c 56.2 3.3E+02 0.0072 30.5 18.4 13 182-194 598-610 (717)
109 KOG1962 B-cell receptor-associ 56.2 2E+02 0.0043 27.8 12.0 76 254-333 130-205 (216)
110 PF14645 Chibby: Chibby family 53.1 44 0.00096 28.9 6.1 37 277-317 69-105 (116)
111 PF04012 PspA_IM30: PspA/IM30 53.0 1.9E+02 0.0041 26.7 19.6 89 252-341 92-185 (221)
112 PLN02939 transferase, transfer 52.7 4.4E+02 0.0096 30.9 22.6 28 242-269 367-394 (977)
113 COG1579 Zn-ribbon protein, pos 52.5 2.3E+02 0.0051 27.6 19.5 64 268-334 99-162 (239)
114 PF07106 TBPIP: Tat binding pr 51.2 1.8E+02 0.0039 25.9 10.7 55 283-337 113-168 (169)
115 KOG3650 Predicted coiled-coil 51.2 60 0.0013 28.1 6.4 39 152-190 66-104 (120)
116 PF07106 TBPIP: Tat binding pr 51.1 1.2E+02 0.0025 27.1 8.8 39 270-308 70-108 (169)
117 PF10481 CENP-F_N: Cenp-F N-te 51.0 2.8E+02 0.006 28.0 15.1 121 175-302 65-192 (307)
118 PF10226 DUF2216: Uncharacteri 50.2 2.3E+02 0.0051 27.0 14.7 54 133-186 18-78 (195)
119 PF09730 BicD: Microtubule-ass 49.4 4.3E+02 0.0094 29.8 24.2 44 245-288 420-463 (717)
120 PRK04778 septation ring format 49.4 3.6E+02 0.0079 28.9 35.5 79 247-325 351-429 (569)
121 TIGR01843 type_I_hlyD type I s 49.3 2.7E+02 0.0059 27.4 25.2 111 233-343 154-268 (423)
122 PF15070 GOLGA2L5: Putative go 49.0 4.1E+02 0.0088 29.4 33.0 42 303-344 349-390 (617)
123 PF10212 TTKRSYEDQ: Predicted 48.3 3.9E+02 0.0085 29.0 20.0 77 247-323 407-485 (518)
124 PRK10884 SH3 domain-containing 48.2 2.5E+02 0.0053 26.6 11.5 41 303-343 128-168 (206)
125 PRK15365 type III secretion sy 48.1 1.2E+02 0.0025 26.2 7.6 18 250-267 18-35 (107)
126 COG1340 Uncharacterized archae 47.8 3.1E+02 0.0067 27.7 32.3 60 275-341 189-248 (294)
127 PF05701 WEMBL: Weak chloropla 47.7 3.8E+02 0.0082 28.6 36.0 55 80-134 125-190 (522)
128 PF12325 TMF_TATA_bd: TATA ele 47.2 2E+02 0.0042 25.2 14.8 53 281-340 63-115 (120)
129 KOG2129 Uncharacterized conser 47.1 3.9E+02 0.0085 28.6 25.7 23 323-345 298-320 (552)
130 PF12718 Tropomyosin_1: Tropom 45.4 2.2E+02 0.0048 25.3 19.5 69 236-308 34-102 (143)
131 PF05615 THOC7: Tho complex su 45.3 2E+02 0.0044 24.8 10.3 73 257-330 52-124 (139)
132 PF06810 Phage_GP20: Phage min 44.9 1.4E+02 0.003 27.0 8.2 45 259-303 28-75 (155)
133 PRK04863 mukB cell division pr 44.8 6.7E+02 0.015 30.7 34.3 49 236-284 998-1046(1486)
134 PF10205 KLRAQ: Predicted coil 44.2 2.1E+02 0.0045 24.6 10.2 64 237-300 5-68 (102)
135 PHA02562 46 endonuclease subun 43.5 4E+02 0.0087 27.7 31.4 20 293-312 379-398 (562)
136 KOG4673 Transcription factor T 43.4 5.5E+02 0.012 29.3 35.7 189 113-301 413-634 (961)
137 TIGR03752 conj_TIGR03752 integ 42.3 1.7E+02 0.0036 31.4 9.4 20 125-144 78-97 (472)
138 PF03962 Mnd1: Mnd1 family; I 41.9 2.5E+02 0.0054 26.0 9.7 100 239-339 64-167 (188)
139 PF06160 EzrA: Septation ring 41.8 4.8E+02 0.01 28.1 27.0 54 234-287 397-459 (560)
140 PF09602 PhaP_Bmeg: Polyhydrox 41.7 2.9E+02 0.0064 25.7 18.3 28 243-270 135-162 (165)
141 smart00435 TOPEUc DNA Topoisom 40.7 2.2E+02 0.0048 29.8 9.9 54 247-300 245-298 (391)
142 PF06785 UPF0242: Uncharacteri 40.7 4.4E+02 0.0096 27.4 16.0 81 265-345 113-219 (401)
143 PF15294 Leu_zip: Leucine zipp 40.4 3.9E+02 0.0085 26.7 14.7 45 171-222 133-178 (278)
144 KOG0962 DNA repair protein RAD 39.1 7.8E+02 0.017 29.8 26.7 108 236-343 267-375 (1294)
145 KOG0964 Structural maintenance 38.1 7.5E+02 0.016 29.3 32.8 225 113-343 184-444 (1200)
146 PRK13182 racA polar chromosome 38.0 2E+02 0.0044 26.6 8.3 23 277-299 123-145 (175)
147 PF06156 DUF972: Protein of un 36.6 2.5E+02 0.0053 24.0 8.0 46 290-335 12-57 (107)
148 PF10211 Ax_dynein_light: Axon 36.4 3.5E+02 0.0077 25.0 14.8 61 275-335 123-184 (189)
149 KOG2391 Vacuolar sorting prote 35.9 3.2E+02 0.007 28.3 10.0 58 282-339 221-278 (365)
150 PF06810 Phage_GP20: Phage min 35.8 3.1E+02 0.0068 24.7 9.1 34 271-304 26-62 (155)
151 PF06156 DUF972: Protein of un 35.5 2E+02 0.0043 24.7 7.3 50 258-307 8-57 (107)
152 PF11559 ADIP: Afadin- and alp 35.4 3E+02 0.0065 24.0 15.6 104 100-211 39-142 (151)
153 PF07544 Med9: RNA polymerase 34.5 1.7E+02 0.0036 23.7 6.4 70 272-341 7-79 (83)
154 cd07605 I-BAR_IMD Inverse (I)- 34.1 4.3E+02 0.0093 25.4 15.4 70 271-345 111-185 (223)
155 PF10146 zf-C4H2: Zinc finger- 34.0 4.4E+02 0.0095 25.4 10.5 67 279-345 11-77 (230)
156 COG2900 SlyX Uncharacterized p 33.4 2.6E+02 0.0057 22.7 7.6 36 234-269 26-61 (72)
157 PF02403 Seryl_tRNA_N: Seryl-t 33.3 2.7E+02 0.0059 22.8 10.1 89 257-346 8-99 (108)
158 PF15254 CCDC14: Coiled-coil d 33.3 8E+02 0.017 28.2 21.4 156 175-345 392-553 (861)
159 PRK13169 DNA replication intia 33.1 2.2E+02 0.0048 24.6 7.2 46 258-303 8-53 (110)
160 PF00769 ERM: Ezrin/radixin/mo 33.0 4.5E+02 0.0099 25.3 12.3 53 279-331 61-113 (246)
161 PF13747 DUF4164: Domain of un 32.9 2.8E+02 0.0061 22.8 8.9 61 282-342 11-74 (89)
162 PF10212 TTKRSYEDQ: Predicted 32.9 6.8E+02 0.015 27.3 15.4 37 242-278 478-514 (518)
163 PF05911 DUF869: Plant protein 32.7 8E+02 0.017 28.0 25.9 70 279-349 134-212 (769)
164 PF10234 Cluap1: Clusterin-ass 32.6 5.1E+02 0.011 25.7 12.7 24 239-262 224-247 (267)
165 KOG4360 Uncharacterized coiled 32.5 7.1E+02 0.015 27.4 17.8 150 35-195 41-234 (596)
166 PF04642 DUF601: Protein of un 32.5 1.9E+02 0.004 29.0 7.4 69 262-334 204-272 (311)
167 PF05911 DUF869: Plant protein 32.0 8.1E+02 0.018 27.9 31.7 111 233-343 592-709 (769)
168 PRK04406 hypothetical protein; 31.6 2.7E+02 0.0059 22.3 9.1 49 281-343 6-54 (75)
169 PRK05729 valS valyl-tRNA synth 31.6 1.6E+02 0.0034 33.4 7.7 30 277-306 809-838 (874)
170 KOG4603 TBP-1 interacting prot 31.1 98 0.0021 29.2 5.0 87 267-353 22-118 (201)
171 PF13942 Lipoprotein_20: YfhG 31.0 4.2E+02 0.0092 24.9 9.1 53 290-342 113-165 (179)
172 KOG0288 WD40 repeat protein Ti 31.0 6.8E+02 0.015 26.7 13.6 55 84-138 12-73 (459)
173 PRK15422 septal ring assembly 30.7 3.1E+02 0.0067 22.7 10.2 63 260-322 6-68 (79)
174 PF13990 YjcZ: YjcZ-like prote 30.5 5.6E+02 0.012 25.6 10.5 55 158-212 71-125 (270)
175 KOG3856 Uncharacterized conser 30.0 1.1E+02 0.0025 27.3 5.0 38 300-337 10-47 (135)
176 PF04111 APG6: Autophagy prote 30.0 5.7E+02 0.012 25.5 11.9 45 275-319 46-90 (314)
177 PF00170 bZIP_1: bZIP transcri 29.8 2.4E+02 0.0053 21.2 8.8 34 309-342 28-61 (64)
178 PF12999 PRKCSH-like: Glucosid 29.2 2.4E+02 0.0053 26.3 7.3 45 120-164 117-161 (176)
179 PF07989 Microtub_assoc: Micro 28.5 3.1E+02 0.0067 22.0 7.1 53 83-135 5-69 (75)
180 KOG4643 Uncharacterized coiled 28.5 1.1E+03 0.023 28.2 30.5 54 88-141 404-457 (1195)
181 PRK11020 hypothetical protein; 28.2 2.1E+02 0.0047 25.2 6.3 50 270-322 29-78 (118)
182 PF10168 Nup88: Nuclear pore c 27.8 9.1E+02 0.02 27.2 20.9 18 181-198 590-607 (717)
183 PF05010 TACC: Transforming ac 27.7 5.4E+02 0.012 24.5 25.0 93 239-331 71-171 (207)
184 KOG2077 JNK/SAPK-associated pr 27.5 7.3E+02 0.016 27.8 11.4 130 120-266 11-150 (832)
185 cd00179 SynN Syntaxin N-termin 27.5 3.9E+02 0.0084 22.7 12.4 109 82-207 10-118 (151)
186 PF09730 BicD: Microtubule-ass 27.5 9.5E+02 0.02 27.2 24.5 77 266-345 108-184 (717)
187 PF05546 She9_MDM33: She9 / Md 27.2 5.7E+02 0.012 24.6 11.6 75 249-326 3-79 (207)
188 KOG0964 Structural maintenance 27.1 1.1E+03 0.024 28.0 31.5 71 244-314 390-460 (1200)
189 PRK09039 hypothetical protein; 26.5 6.8E+02 0.015 25.3 21.4 61 273-340 138-199 (343)
190 PLN03188 kinesin-12 family pro 26.5 1.2E+03 0.027 28.3 22.8 103 189-291 1112-1237(1320)
191 PF12777 MT: Microtubule-bindi 26.3 4E+02 0.0087 26.7 8.9 69 232-300 244-312 (344)
192 KOG3859 Septins (P-loop GTPase 26.0 7.5E+02 0.016 25.6 12.6 52 242-303 350-401 (406)
193 PF08580 KAR9: Yeast cortical 26.0 4.3E+02 0.0094 29.5 9.7 88 115-203 230-328 (683)
194 KOG0995 Centromere-associated 25.9 9.3E+02 0.02 26.6 22.6 186 124-334 169-359 (581)
195 PTZ00419 valyl-tRNA synthetase 25.8 3E+02 0.0065 31.7 8.8 30 277-306 927-956 (995)
196 KOG0804 Cytoplasmic Zn-finger 25.7 8.7E+02 0.019 26.2 13.9 101 247-347 328-440 (493)
197 KOG0933 Structural maintenance 24.7 1.2E+03 0.027 27.7 33.2 105 242-346 834-945 (1174)
198 PF09789 DUF2353: Uncharacteri 24.6 7.6E+02 0.017 25.2 17.8 69 276-344 130-230 (319)
199 PRK13169 DNA replication intia 24.5 4.6E+02 0.01 22.6 8.0 46 289-334 11-56 (110)
200 PF15619 Lebercilin: Ciliary p 24.4 5.9E+02 0.013 23.8 24.6 65 152-223 15-82 (194)
201 PF02050 FliJ: Flagellar FliJ 24.3 3.5E+02 0.0077 21.2 15.3 79 244-324 19-97 (123)
202 KOG4403 Cell surface glycoprot 24.3 9.3E+02 0.02 26.1 14.8 86 120-211 228-313 (575)
203 PF09432 THP2: Tho complex sub 24.1 2.7E+02 0.0058 25.0 6.3 52 246-309 54-108 (132)
204 PF04102 SlyX: SlyX; InterPro 23.9 3.5E+02 0.0076 21.0 7.2 49 285-347 3-51 (69)
205 PF11932 DUF3450: Protein of u 23.8 6.3E+02 0.014 24.0 12.7 11 246-256 37-47 (251)
206 KOG0962 DNA repair protein RAD 23.8 1.4E+03 0.03 27.9 31.9 26 143-168 897-922 (1294)
207 TIGR02449 conserved hypothetic 23.4 3.8E+02 0.0082 21.2 7.3 44 118-165 12-55 (65)
208 KOG0244 Kinesin-like protein [ 23.1 1.2E+03 0.027 27.1 20.2 186 111-316 462-655 (913)
209 KOG4005 Transcription factor X 23.1 5.7E+02 0.012 25.5 8.8 81 238-329 60-140 (292)
210 PF06632 XRCC4: DNA double-str 23.1 8.3E+02 0.018 25.0 11.8 64 280-343 138-209 (342)
211 PRK02793 phi X174 lysis protei 22.8 3.9E+02 0.0084 21.1 8.7 51 284-348 6-56 (72)
212 PLN02943 aminoacyl-tRNA ligase 22.7 2.9E+02 0.0063 31.8 7.9 29 277-305 887-915 (958)
213 PF09731 Mitofilin: Mitochondr 22.7 9.4E+02 0.02 25.6 25.9 24 113-136 255-278 (582)
214 PRK14900 valS valyl-tRNA synth 22.4 2.9E+02 0.0063 32.2 7.9 60 277-342 840-905 (1052)
215 PTZ00464 SNF-7-like protein; P 22.0 6.9E+02 0.015 23.8 11.6 28 314-341 68-95 (211)
216 PLN02381 valyl-tRNA synthetase 21.8 3.1E+02 0.0067 32.1 8.0 30 277-306 995-1024(1066)
217 TIGR01808 CM_M_hiGC-arch monof 21.0 2.3E+02 0.0051 22.3 4.9 35 295-329 2-36 (74)
218 COG3096 MukB Uncharacterized p 21.0 1.4E+03 0.03 26.8 25.3 49 246-301 1061-1109(1480)
219 PF14988 DUF4515: Domain of un 20.7 7.2E+02 0.016 23.5 21.5 69 126-201 17-85 (206)
220 PF06428 Sec2p: GDP/GTP exchan 20.6 1.3E+02 0.0029 25.5 3.6 65 280-344 9-74 (100)
221 PF06160 EzrA: Septation ring 20.5 1.1E+03 0.023 25.4 32.5 57 247-303 347-403 (560)
222 TIGR00293 prefoldin, archaeal 20.5 5.1E+02 0.011 21.7 8.0 20 245-264 14-33 (126)
223 COG4026 Uncharacterized protei 20.5 8.4E+02 0.018 24.2 10.3 73 248-334 132-204 (290)
224 PF08580 KAR9: Yeast cortical 20.2 1.2E+03 0.027 26.0 14.8 42 307-348 115-157 (683)
225 PF04380 BMFP: Membrane fusoge 20.2 4.6E+02 0.0099 21.0 6.8 29 260-288 8-36 (79)
226 PRK05431 seryl-tRNA synthetase 20.0 9.9E+02 0.022 24.8 11.5 64 283-346 32-98 (425)
227 PF05812 Herpes_BLRF2: Herpesv 20.0 1.3E+02 0.0029 26.4 3.6 28 280-307 4-31 (118)
No 1
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=100.00 E-value=1.8e-73 Score=553.74 Aligned_cols=282 Identities=47% Similarity=0.631 Sum_probs=274.8
Q ss_pred ccccccccCCCCCchhHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHhhHHHHHHHHhhHH
Q 018258 63 SESDDTLKNRKPENTETRRKSSKRTFKSEKEFLEFTLKYQQVLAERDAAMAVRDKLESLCRELQRQNKMLMDECKRVSSE 142 (359)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~r~~~k~~~~ler~~~~~~~~~~qv~~Er~kai~~K~KLE~LCRELQkqNK~lKEE~~~~~~e 142 (359)
.+-++.+..+-.+....+|+.++.+..+++.+..+.+.+++++.|++++|++|+|||+||||||++|+.|++|+++++++
T Consensus 21 eeK~~~L~kk~~ell~e~k~~~k~~~~~~Kk~~~l~kek~~l~~E~~k~~~~k~KLE~LCRELQk~Nk~lkeE~~~~~~e 100 (309)
T PF09728_consen 21 EEKLEALCKKYAELLEEMKRLQKQLKKLQKKQEQLQKEKDQLQSELSKAILAKSKLESLCRELQKQNKKLKEESKRRARE 100 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566677777788899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhHhHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHhHHHHH
Q 018258 143 GQNLRLDLSAKFQDAIKDVSIKLEEQKDDCLSQLKENEMLRTNLKQLADQYALTEQQYAQKLKQKTLELQIGELKIKQHE 222 (359)
Q Consensus 143 ee~kRkelsekFq~tL~dIq~~meE~~~~~~k~~~EN~~LreKLK~lieQYElRE~h~~k~lK~KeLE~QL~~AKleq~~ 222 (359)
++.+|.+|++||+++|+||+++|+++++.+.+++++|..|++|||+|++||++||.||++++++++||+||++|||++++
T Consensus 101 ee~kR~el~~kFq~~L~dIq~~~ee~~~~~~k~~~eN~~L~eKlK~l~eQye~rE~~~~~~~k~keLE~Ql~~AKl~q~~ 180 (309)
T PF09728_consen 101 EEEKRKELSEKFQATLKDIQAQMEEQSERNIKLREENEELREKLKSLIEQYELREEHFEKLLKQKELEVQLAEAKLEQQQ 180 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018258 223 EKLVQEQSQMKLYAE-------QVSQLLATEKNLRLQLTADGEKFQQFQDALVKSNEVFETFKQEIEKMAKSIKELKKEN 295 (359)
Q Consensus 223 e~~~~Ek~q~k~l~e-------qv~~l~~tE~eLr~QL~~Y~eKF~EFQdTL~KSNevF~tFKkEMEKMsKKiKkLEKEn 295 (359)
..+.++..++..+.+ +|..|.++|.+|+.||++|++||++||+||+|||++|+|||+||++|+|+|++||||+
T Consensus 181 ~~~~~e~~k~~~~~~~~l~~~~~~~~~~~~E~~Lr~QL~~Y~~Kf~efq~tL~kSNe~F~tfk~Emekm~Kk~kklEKE~ 260 (309)
T PF09728_consen 181 EEAEQEKEKAKQEKEILLEEAAQVQTLKETEKELREQLNLYSEKFEEFQDTLNKSNEVFETFKKEMEKMSKKIKKLEKEN 260 (309)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999988888 9999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018258 296 AFLKSKCEKSDFTLIELVEERERMKKQLEKSKNQKEKLESLCRSLQAER 344 (359)
Q Consensus 296 ~~~k~K~E~sn~aLiemaeEr~~~~ke~e~~kkq~ekLe~LCRaLQ~ER 344 (359)
..|++|||+||++||+|++||+.+.++++.+++|+++|++|||+||+||
T Consensus 261 ~~~k~k~e~~n~~l~~m~eer~~~~~~~~~~~~k~~kLe~LcRaLQ~er 309 (309)
T PF09728_consen 261 QTWKSKWEKSNKALIEMAEERQKLEKELEKLKKKIEKLEKLCRALQAER 309 (309)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 9999999999999999999999999999999999999999999999997
No 2
>KOG1850 consensus Myosin-like coiled-coil protein [Cytoskeleton]
Probab=100.00 E-value=8.8e-59 Score=447.26 Aligned_cols=273 Identities=30% Similarity=0.393 Sum_probs=255.5
Q ss_pred CCchhHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHhhHHHHHHHHhhHHHHHhhHhHHHH
Q 018258 74 PENTETRRKSSKRTFKSEKEFLEFTLKYQQVLAERDAAMAVRDKLESLCRELQRQNKMLMDECKRVSSEGQNLRLDLSAK 153 (359)
Q Consensus 74 ~~~~~~~r~~~k~~~~ler~~~~~~~~~~qv~~Er~kai~~K~KLE~LCRELQkqNK~lKEE~~~~~~eee~kRkelsek 153 (359)
....+.++++...++.|+++.+.-.+...++| ++++++++|+|||+|||||||+|+.+++|+....+.+++.|++-+++
T Consensus 35 ~d~~e~~~~v~~~~kvlq~k~~t~~kek~~~Q-~l~kt~larsKLeelCRelQr~nk~~keE~~~q~k~eEerRkea~~~ 113 (391)
T KOG1850|consen 35 KDNAELKIKVLDYDKVLQVKDLTEKKEKRNNQ-ILLKTELARSKLEELCRELQRANKQTKEEACAQMKKEEERRKEAVEQ 113 (391)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35778899999999999999999999999999 99999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHH--H--
Q 018258 154 FQDAIKDVSIKLEEQKDDCLSQLKENEMLRTNLKQLADQYALTEQQYAQKLKQKTLELQIGELKIKQHEEKLVQE--Q-- 229 (359)
Q Consensus 154 Fq~tL~dIq~~meE~~~~~~k~~~EN~~LreKLK~lieQYElRE~h~~k~lK~KeLE~QL~~AKleq~~e~~~~E--k-- 229 (359)
||.||+||+..|.+++..++++.++|..|+++|+.|++||+.|++||++++.++++..||..||+.......+.. .
T Consensus 114 fqvtL~diqktla~~~~~n~klre~NieL~eKlkeL~eQy~~re~hidk~~e~kel~~ql~~aKlq~~~~l~a~~ee~~~ 193 (391)
T KOG1850|consen 114 FQVTLKDIQKTLAEGRSKNDKLREDNIELSEKLKELGEQYEEREKHIDKQIQKKELWEQLGKAKLQEIKLLTAKLEEASI 193 (391)
T ss_pred HHhHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999998765443221 1
Q ss_pred ----HHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018258 230 ----SQMK---LYAEQVSQLLATEKNLRLQLTADGEKFQQFQDALVKSNEVFETFKQEIEKMAKSIKELKKENAFLKSKC 302 (359)
Q Consensus 230 ----~q~k---~l~eqv~~l~~tE~eLr~QL~~Y~eKF~EFQdTL~KSNevF~tFKkEMEKMsKKiKkLEKEn~~~k~K~ 302 (359)
+.+. +....+..+...|..|+.|+++|++||++||.||+|||++|++||+||++|+|+|++||||...|++||
T Consensus 194 ~e~~~glEKd~lak~~~e~~~~~e~qlK~ql~lY~aKyeefq~tl~KSNE~F~~fK~E~ekmtKk~kklEKE~l~wr~K~ 273 (391)
T KOG1850|consen 194 QEKKSGLEKDELAKIMLEEMKQVEGQLKEQLALYMAKYEEFQTTLAKSNELFTKFKQEMEKMTKKIKKLEKETLIWRTKW 273 (391)
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1121 234567888999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 018258 303 EKSDFTLIELVEERERMKKQLEKSKNQKEKLESLCRSLQAERKQN 347 (359)
Q Consensus 303 E~sn~aLiemaeEr~~~~ke~e~~kkq~ekLe~LCRaLQ~ER~~~ 347 (359)
|++|.+++.|+++++...++++.++++|++|++||||||.+|+.+
T Consensus 274 e~aNk~vL~la~ekt~~~k~~~~lq~kiq~LekLcRALq~ernel 318 (391)
T KOG1850|consen 274 ENANKAVLQLAEEKTVRDKEYETLQKKIQRLEKLCRALQTERNEL 318 (391)
T ss_pred hhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhccccH
Confidence 999999999999999999999999999999999999999999875
No 3
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=97.57 E-value=0.26 Score=56.55 Aligned_cols=103 Identities=24% Similarity=0.365 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHH
Q 018258 235 YAEQVSQLLATEKNLRLQLTADGEKFQQFQDALVKSNEVFETFKQEIEKMAKSIKELKKENAFLKSKCEKSDFTLIELVE 314 (359)
Q Consensus 235 l~eqv~~l~~tE~eLr~QL~~Y~eKF~EFQdTL~KSNevF~tFKkEMEKMsKKiKkLEKEn~~~k~K~E~sn~aLiemae 314 (359)
+..++..+...-.++..+++.+......++.-+.....-+..++.++..+...+..++.+...+..........+.++..
T Consensus 826 ~~~ei~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~l~~~~~~~~~l~~~l~~~~~~~~~~~~ 905 (1163)
T COG1196 826 LEQEIEELEEEIEELEEKLDELEEELEELEKELEELKEELEELEAEKEELEDELKELEEEKEELEEELRELESELAELKE 905 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445444444455555555555555555555555556666666666666666666555555555555555555554444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 018258 315 ERERMKKQLEKSKNQKEKLESLC 337 (359)
Q Consensus 315 Er~~~~ke~e~~kkq~ekLe~LC 337 (359)
+.......+..+......|+..+
T Consensus 906 ~~~~~~~~~~~l~~~~~~~~~~~ 928 (1163)
T COG1196 906 EIEKLRERLEELEAKLERLEVEL 928 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444433333333333333
No 4
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=97.42 E-value=0.33 Score=54.01 Aligned_cols=25 Identities=4% Similarity=0.016 Sum_probs=12.8
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHh
Q 018258 85 KRTFKSEKEFLEFTLKYQQVLAERD 109 (359)
Q Consensus 85 k~~~~ler~~~~~~~~~~qv~~Er~ 109 (359)
+.+..+..++..+...+..+..+..
T Consensus 674 ~~l~~l~~~l~~l~~~l~~l~~~~~ 698 (1164)
T TIGR02169 674 AELQRLRERLEGLKRELSSLQSELR 698 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555554443
No 5
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=97.26 E-value=0.49 Score=52.69 Aligned_cols=68 Identities=24% Similarity=0.277 Sum_probs=27.8
Q ss_pred HHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHHHHHHHHHHH
Q 018258 263 FQDALVKSNEVFETFKQEIEKMAKSIKELKKENAFLKSKCEKSDFTLIELVEERERMKKQLEKSKNQK 330 (359)
Q Consensus 263 FQdTL~KSNevF~tFKkEMEKMsKKiKkLEKEn~~~k~K~E~sn~aLiemaeEr~~~~ke~e~~kkq~ 330 (359)
++..+..-..-+..+..++......+..++.+...+..+.......+..+..+...+..++..+..++
T Consensus 425 ~~~~~~~l~~~~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~l~~l~~~l~~l~~~~ 492 (1164)
T TIGR02169 425 LNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQREL 492 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333444444444444444444444444444444444444444444343333433333333
No 6
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=97.03 E-value=0.79 Score=50.81 Aligned_cols=19 Identities=16% Similarity=0.260 Sum_probs=8.0
Q ss_pred hhhHHHHHHHHHHHHHHHH
Q 018258 89 KSEKEFLEFTLKYQQVLAE 107 (359)
Q Consensus 89 ~ler~~~~~~~~~~qv~~E 107 (359)
.++.++..+......+..+
T Consensus 674 ~l~~e~~~l~~~~~~l~~~ 692 (1179)
T TIGR02168 674 ERRREIEELEEKIEELEEK 692 (1179)
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444433
No 7
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=97.00 E-value=0.84 Score=50.61 Aligned_cols=25 Identities=12% Similarity=0.065 Sum_probs=13.6
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHh
Q 018258 85 KRTFKSEKEFLEFTLKYQQVLAERD 109 (359)
Q Consensus 85 k~~~~ler~~~~~~~~~~qv~~Er~ 109 (359)
..+..++.++..+......+..+..
T Consensus 677 ~e~~~l~~~~~~l~~~l~~~~~~~~ 701 (1179)
T TIGR02168 677 REIEELEEKIEELEEKIAELEKALA 701 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455556666666555555554443
No 8
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=96.98 E-value=0.71 Score=49.43 Aligned_cols=36 Identities=36% Similarity=0.413 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHh
Q 018258 309 LIELVEERERMKKQLEKSKNQKE-KLESLCRSLQAER 344 (359)
Q Consensus 309 LiemaeEr~~~~ke~e~~kkq~e-kLe~LCRaLQ~ER 344 (359)
+-+-..|++.+..++...+.... .|--.+|.|+.-+
T Consensus 387 lqEer~E~qkL~~ql~ke~D~n~vqlsE~~rel~Elk 423 (546)
T PF07888_consen 387 LQEERMERQKLEKQLGKEKDCNRVQLSENRRELQELK 423 (546)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Confidence 33444455555555543332221 3555555555433
No 9
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=96.36 E-value=3.8 Score=49.81 Aligned_cols=156 Identities=22% Similarity=0.292 Sum_probs=84.7
Q ss_pred HHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHH-HHHHHHH--hHHHHHHHHHHHHHHH
Q 018258 156 DAIKDVSIKLEEQKDDCLSQLKENEMLRTNLKQLADQYALTEQQYAQKLKQKTL-ELQIGEL--KIKQHEEKLVQEQSQM 232 (359)
Q Consensus 156 ~tL~dIq~~meE~~~~~~k~~~EN~~LreKLK~lieQYElRE~h~~k~lK~KeL-E~QL~~A--Kleq~~e~~~~Ek~q~ 232 (359)
..+.++...+++.-....+...|....-.+++.+-+.-...++++.++.+.+-+ |..+... .++...+++..-....
T Consensus 936 ~e~~~l~~~~~~~E~~~~k~~~Ek~~~e~~~~~l~~e~~~~~e~~~kL~kekk~lEe~~~~l~~~l~~~eek~~~l~k~~ 1015 (1930)
T KOG0161|consen 936 QEVQELKEQLEELELTLQKLELEKNAAENKLKNLEEEINSLDENISKLSKEKKELEERIRELQDDLQAEEEKAKSLNKAK 1015 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555655555555666677777788888888777788888888776643 3322211 1111111111111111
Q ss_pred HHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhH
Q 018258 233 KLYAEQVSQ---LLATEKNLRLQLTADGEKFQQFQDALVKSNEVFETFKQEIEKMAKSIKELKKENAFLKSKCEKSDFTL 309 (359)
Q Consensus 233 k~l~eqv~~---l~~tE~eLr~QL~~Y~eKF~EFQdTL~KSNevF~tFKkEMEKMsKKiKkLEKEn~~~k~K~E~sn~aL 309 (359)
..|..++.. ..+.|...+..+.--..||+- -|.-.-+--..++...+.+.-..++.|-|...+..+.+.-+..+
T Consensus 1016 ~kle~~l~~le~~le~e~~~r~e~Ek~~rkle~---el~~~~e~~~~~~~~~~el~~~l~kke~El~~l~~k~e~e~~~~ 1092 (1930)
T KOG0161|consen 1016 AKLEQQLDDLEVTLEREKRIRMELEKAKRKLEG---ELKDLQESIEELKKQKEELDNQLKKKESELSQLQSKLEDEQAEV 1092 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 122233332 345566666666644444442 22111121222667777777778888888888888887776666
Q ss_pred HHHHH
Q 018258 310 IELVE 314 (359)
Q Consensus 310 iemae 314 (359)
..+..
T Consensus 1093 ~~l~k 1097 (1930)
T KOG0161|consen 1093 AQLQK 1097 (1930)
T ss_pred HHHHH
Confidence 54433
No 10
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.34 E-value=3.1 Score=48.54 Aligned_cols=101 Identities=9% Similarity=0.115 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHH
Q 018258 244 ATEKNLRLQLTADGEKFQQFQDALVKSNEVFETFKQEIEKM--AKSIKELKKENAFLKSKCEKSDFTLIELVEERERMKK 321 (359)
Q Consensus 244 ~tE~eLr~QL~~Y~eKF~EFQdTL~KSNevF~tFKkEMEKM--sKKiKkLEKEn~~~k~K~E~sn~aLiemaeEr~~~~k 321 (359)
.+-..+...+.............|..++.....++..+.-+ ...+..++.+...+...+...+ ...+..++..+..
T Consensus 984 ~~ie~le~e~~~l~~~i~~l~kel~~~~~~kr~l~dnL~~~~~~~~l~el~~eI~~l~~~~~~~~--~~~~~~e~~~l~~ 1061 (1311)
T TIGR00606 984 AQLEECEKHQEKINEDMRLMRQDIDTQKIQERWLQDNLTLRKRENELKEVEEELKQHLKEMGQMQ--VLQMKQEHQKLEE 1061 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc--HHHHHHHHHHHHH
Confidence 33345555555566666666666666666555555555555 4444444444444443333222 2444555566666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhc
Q 018258 322 QLEKSKNQKEKLESLCRSLQAERKQ 346 (359)
Q Consensus 322 e~e~~kkq~ekLe~LCRaLQ~ER~~ 346 (359)
++..+..+...|.+=++.|+.+...
T Consensus 1062 ~~~~l~~~~a~l~g~~k~le~qi~~ 1086 (1311)
T TIGR00606 1062 NIDLIKRNHVLALGRQKGYEKEIKH 1086 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666665555555666666655443
No 11
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.28 E-value=2.6 Score=47.05 Aligned_cols=103 Identities=20% Similarity=0.227 Sum_probs=74.2
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018258 216 LKIKQHEEKLVQEQSQMKLYAEQVSQLLATEKNLRLQLTADGEKFQQFQDALVKSNEVFETFKQEIEKMAKSIKELKKEN 295 (359)
Q Consensus 216 AKleq~~e~~~~Ek~q~k~l~eqv~~l~~tE~eLr~QL~~Y~eKF~EFQdTL~KSNevF~tFKkEMEKMsKKiKkLEKEn 295 (359)
|+.++..-....|+..+.-+.....++...+..|..++.....|..++. --.++-|.+++-|++.+-..=.|.
T Consensus 416 ar~qem~~Qk~reqe~iv~~nak~~ql~~eletLn~k~qqls~kl~Dvr-------~~~tt~kt~ie~~~~q~e~~isei 488 (1118)
T KOG1029|consen 416 ARRQEMLNQKNREQEWIVYLNAKKKQLQQELETLNFKLQQLSGKLQDVR-------VDITTQKTEIEEVTKQRELMISEI 488 (1118)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhe-------eccchHHHHHHHhhhHHHHHHHHH
Confidence 5554443333344444444555566666666667666666666655543 335678899999999999888999
Q ss_pred HHHHHHHHhhhHhHHHHHHHHHHHHHHHHH
Q 018258 296 AFLKSKCEKSDFTLIELVEERERMKKQLEK 325 (359)
Q Consensus 296 ~~~k~K~E~sn~aLiemaeEr~~~~ke~e~ 325 (359)
..++.+.-..+..|+.++-|++.|..++..
T Consensus 489 ~qlqarikE~q~kl~~l~~Ekq~l~~qlkq 518 (1118)
T KOG1029|consen 489 DQLQARIKELQEKLQKLAPEKQELNHQLKQ 518 (1118)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 999999999999999999999999988754
No 12
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=96.20 E-value=2.6 Score=46.32 Aligned_cols=108 Identities=28% Similarity=0.303 Sum_probs=94.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHH
Q 018258 236 AEQVSQLLATEKNLRLQLTADGE----KFQQFQDALVKSNEVFETFKQEIEKMAKSIKELKKENAFLKSKCEKSDFTLIE 311 (359)
Q Consensus 236 ~eqv~~l~~tE~eLr~QL~~Y~e----KF~EFQdTL~KSNevF~tFKkEMEKMsKKiKkLEKEn~~~k~K~E~sn~aLie 311 (359)
..+|..|-.++..||..|+.-.+ +.+++...|.+|-+.+.+.--||.+.-+.|+-||-....++...++.+..+-+
T Consensus 533 ~kqie~Lee~~~~Lrneles~~eel~~k~~Ev~~kl~ksEen~r~~e~e~~~k~kq~k~lenk~~~LrKqvEnk~K~iee 612 (786)
T PF05483_consen 533 LKQIENLEETNTQLRNELESVKEELKQKGEEVKCKLDKSEENARSIECEILKKEKQMKILENKCNNLRKQVENKNKNIEE 612 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 45778888999999999996655 45578899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018258 312 LVEERERMKKQLEKSKNQKEKLESLCRSLQAE 343 (359)
Q Consensus 312 maeEr~~~~ke~e~~kkq~ekLe~LCRaLQ~E 343 (359)
+..+...+++++.+--+|+.-++.-+-.|+.+
T Consensus 613 LqqeNk~LKKk~~aE~kq~~~~eikVn~L~~E 644 (786)
T PF05483_consen 613 LQQENKALKKKITAESKQSNVYEIKVNKLQEE 644 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999888777777777777777665
No 13
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=96.14 E-value=5 Score=48.89 Aligned_cols=186 Identities=21% Similarity=0.281 Sum_probs=115.4
Q ss_pred hHHHHHhhHhHHHHHHHHHHH---HHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHH-HHHHHHHH
Q 018258 140 SSEGQNLRLDLSAKFQDAIKD---VSIKLEEQKDDCLSQLKENEMLRTNLKQLADQYALTEQQYAQKLKQK-TLELQIGE 215 (359)
Q Consensus 140 ~~eee~kRkelsekFq~tL~d---Iq~~meE~~~~~~k~~~EN~~LreKLK~lieQYElRE~h~~k~lK~K-eLE~QL~~ 215 (359)
..+.+..|..+...+..+-.. ....|....+...++.++-..|-+++..+.+.+...++..+++-+.+ -||.++.+
T Consensus 945 ~~~~E~~~~k~~~Ek~~~e~~~~~l~~e~~~~~e~~~kL~kekk~lEe~~~~l~~~l~~~eek~~~l~k~~~kle~~l~~ 1024 (1930)
T KOG0161|consen 945 LEELELTLQKLELEKNAAENKLKNLEEEINSLDENISKLSKEKKELEERIRELQDDLQAEEEKAKSLNKAKAKLEQQLDD 1024 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455556666666666443 34444444566677788888899999999999999999999987776 58888776
Q ss_pred Hh--HHHHHH-HHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHH
Q 018258 216 LK--IKQHEE-KLVQEQSQM------KLYAEQVSQLLATEKNLRLQLTADGEKFQQFQDALVKSNEVFETFKQEIEKMAK 286 (359)
Q Consensus 216 AK--leq~~e-~~~~Ek~q~------k~l~eqv~~l~~tE~eLr~QL~~Y~eKF~EFQdTL~KSNevF~tFKkEMEKMsK 286 (359)
.. +++... ....|+.+- +.+.+.+..+...=.+|..+|.....-....+.-+..=+..-..|.+.+..+..
T Consensus 1025 le~~le~e~~~r~e~Ek~~rkle~el~~~~e~~~~~~~~~~el~~~l~kke~El~~l~~k~e~e~~~~~~l~k~i~eL~~ 1104 (1930)
T KOG0161|consen 1025 LEVTLEREKRIRMELEKAKRKLEGELKDLQESIEELKKQKEELDNQLKKKESELSQLQSKLEDEQAEVAQLQKQIKELEA 1104 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 64 333322 122333221 223444444444444555555444333334444444444467777788888888
Q ss_pred HHHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHHHHHH
Q 018258 287 SIKELKKENAFLKSKCEKSDFTLIELVEERERMKKQLEK 325 (359)
Q Consensus 287 KiKkLEKEn~~~k~K~E~sn~aLiemaeEr~~~~ke~e~ 325 (359)
.|+.|+-+...-+.--.+..++.-++..+-..+..+++.
T Consensus 1105 ~i~el~e~le~er~~r~K~ek~r~dL~~ele~l~~~Lee 1143 (1930)
T KOG0161|consen 1105 RIKELEEELEAERASRAKAERQRRDLSEELEELKEELEE 1143 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888877777777666666666666666666666655544
No 14
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=95.91 E-value=0.61 Score=43.62 Aligned_cols=118 Identities=23% Similarity=0.282 Sum_probs=83.5
Q ss_pred hhhhhhhhhhhhHHHHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHhhHHHHHHH---HhhHHHHHhhHhHHHHHHH
Q 018258 80 RRKSSKRTFKSEKEFLEFTLKYQQVLAERDAAMAVRDKLESLCRELQRQNKMLMDECK---RVSSEGQNLRLDLSAKFQD 156 (359)
Q Consensus 80 ~r~~~k~~~~ler~~~~~~~~~~qv~~Er~kai~~K~KLE~LCRELQkqNK~lKEE~~---~~~~eee~kRkelsekFq~ 156 (359)
-+....-+.+++++...+.+...+..++......++.+|..+ +++.+.++-|+. ++...=+.-|.+|..+|..
T Consensus 57 N~~L~epL~~a~~e~~eL~k~L~~y~kdK~~L~~~k~rl~~~----ek~l~~Lk~e~evL~qr~~kle~ErdeL~~kf~~ 132 (201)
T PF13851_consen 57 NKRLSEPLKKAEEEVEELRKQLKNYEKDKQSLQNLKARLKEL----EKELKDLKWEHEVLEQRFEKLEQERDELYRKFES 132 (201)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445556666677777766666555555555667777644 444455554443 3344456679999999999
Q ss_pred HHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHH
Q 018258 157 AIKDVSIKLEEQKDDCLSQLKENEMLRTNLKQLADQYALTEQQYAQKLKQKTLEL 211 (359)
Q Consensus 157 tL~dIq~~meE~~~~~~k~~~EN~~LreKLK~lieQYElRE~h~~k~lK~KeLE~ 211 (359)
+|.||+.... --|..|..||..+.+..|.++.++..++..--++-
T Consensus 133 ~i~evqQk~~----------~kn~lLEkKl~~l~~~lE~keaqL~evl~~~nldp 177 (201)
T PF13851_consen 133 AIQEVQQKTG----------LKNLLLEKKLQALSEQLEKKEAQLNEVLAAANLDP 177 (201)
T ss_pred HHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCH
Confidence 9999986654 35778999999999999999999999888766555
No 15
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=95.91 E-value=2.1 Score=42.62 Aligned_cols=58 Identities=16% Similarity=0.127 Sum_probs=41.7
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHhhHHHHHHHHhh
Q 018258 83 SSKRTFKSEKEFLEFTLKYQQVLAERDAAMAVRDKLESLCRELQRQNKMLMDECKRVS 140 (359)
Q Consensus 83 ~~k~~~~ler~~~~~~~~~~qv~~Er~kai~~K~KLE~LCRELQkqNK~lKEE~~~~~ 140 (359)
.-..++.+++++..+.+++.++++|++....=.+|....---|+.-.+.+.-.|+...
T Consensus 34 ll~e~k~~~k~~~~~~Kk~~~l~kek~~l~~E~~k~~~~k~KLE~LCRELQk~Nk~lk 91 (309)
T PF09728_consen 34 LLEEMKRLQKQLKKLQKKQEQLQKEKDQLQSELSKAILAKSKLESLCRELQKQNKKLK 91 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445677888889999999999999888877777776666666666666666654433
No 16
>KOG2008 consensus BTK-associated SH3-domain binding protein SAB [Signal transduction mechanisms]
Probab=95.34 E-value=3.7 Score=41.65 Aligned_cols=192 Identities=15% Similarity=0.164 Sum_probs=122.2
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHhhHHHH---HHHH---HhHHHHHHHHHHHhHHHHHHHH
Q 018258 152 AKFQDAIKDVSIKLEEQKDDCLSQLKENEMLRTNLKQLADQYALTEQQ---YAQK---LKQKTLELQIGELKIKQHEEKL 225 (359)
Q Consensus 152 ekFq~tL~dIq~~meE~~~~~~k~~~EN~~LreKLK~lieQYElRE~h---~~k~---lK~KeLE~QL~~AKleq~~e~~ 225 (359)
+++..+-.||..+=-+-...+.+.++.--+...||+.|..+|..--.. |+.+ -++--++.|-+.+.|++++.-+
T Consensus 20 EkLN~sTDdIN~~E~~Le~ar~~Fretqv~~t~kl~el~Kk~~k~I~ksrpf~elk~~er~~r~e~QkAa~~FeRat~vl 99 (426)
T KOG2008|consen 20 EKLNQSTDDINRRETELEDARQKFRETQVEATVKLDELVKKIGKAIEKSRPFWELKRVERQARLEAQKAAQDFERATEVL 99 (426)
T ss_pred HHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555543322233333344445556667777777777643221 3331 1233467788888888888877
Q ss_pred HHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Q 018258 226 VQEQSQMKLYAEQVS--QLLATEKNLRLQLTADGEKFQQFQDALVKSNEVFETFKQEIEKMAKSIKELKKENAFLKSK-- 301 (359)
Q Consensus 226 ~~Ek~q~k~l~eqv~--~l~~tE~eLr~QL~~Y~eKF~EFQdTL~KSNevF~tFKkEMEKMsKKiKkLEKEn~~~k~K-- 301 (359)
..-+.|+-++...+. .-..-+..-..-||...+...+...+-+++-.+-.+--..|--+.-+|+++||+|...-.|
T Consensus 100 ~~AkeqVsl~~~sL~~~~~~~~~~~~~evlnh~~qrV~EaE~e~t~aE~~Has~a~~~l~l~~~~R~~ek~n~~AIkKSr 179 (426)
T KOG2008|consen 100 RAAKEQVSLAEQSLLEDDKRQFDSAWQEVLNHATQRVMEAEQEKTRAELVHASTAARYLALMGRMRQLEKKNKRAIKKSR 179 (426)
T ss_pred HHHHHHHHHHHHHhhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhcc
Confidence 666666665544443 2233455666677788888888888888888888888888888889999999999765433
Q ss_pred ------------HHhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 018258 302 ------------CEKSDFTLIELVEERERMKKQLEKSKNQKEKLESLCRSLQAERKQ 346 (359)
Q Consensus 302 ------------~E~sn~aLiemaeEr~~~~ke~e~~kkq~ekLe~LCRaLQ~ER~~ 346 (359)
.+.-...+..+-.|.+..+..|.. -+-.|+-+.-.+..+|..
T Consensus 180 pYfE~k~~~t~~le~qk~tv~~Leaev~~~K~~Y~~---slrnLE~ISd~IHeeRss 233 (426)
T KOG2008|consen 180 PYFELKAKYTVQLEQQKKTVDDLEAEVTLAKGEYKM---SLRNLEMISDEIHEERSS 233 (426)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHH---HHHHHHHHHHHHHHhhhh
Confidence 233444445555555555555433 455688888999999875
No 17
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=95.00 E-value=3.3 Score=39.22 Aligned_cols=70 Identities=21% Similarity=0.233 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHH
Q 018258 244 ATEKNLRLQLTADGEKFQQFQDALVKSNEVFETFKQEIEKMAKSIKELKKENAFLKSKCEKSDFTLIELV 313 (359)
Q Consensus 244 ~tE~eLr~QL~~Y~eKF~EFQdTL~KSNevF~tFKkEMEKMsKKiKkLEKEn~~~k~K~E~sn~aLiema 313 (359)
..+...-.....|-+++..+..-|..+-.-+...-..+.++.+.|..||.+...|+.++......|..+.
T Consensus 162 ~~~~~~~~re~~~e~~i~~L~~~lkeaE~Rae~aE~~v~~Le~~id~le~eL~~~k~~~~~~~~eld~~l 231 (237)
T PF00261_consen 162 ASEEKASEREDEYEEKIRDLEEKLKEAENRAEFAERRVKKLEKEIDRLEDELEKEKEKYKKVQEELDQTL 231 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333444444444444555555555555555556666666666666666666666666666655443
No 18
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=94.99 E-value=12 Score=45.48 Aligned_cols=207 Identities=17% Similarity=0.185 Sum_probs=130.3
Q ss_pred hHHHHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHhhHHHHHHHHhhHHHHHhhHhHHHHHHHHHHHHHH---HHHh
Q 018258 91 EKEFLEFTLKYQQVLAERDAAMAVRDKLESLCRELQRQNKMLMDECKRVSSEGQNLRLDLSAKFQDAIKDVSI---KLEE 167 (359)
Q Consensus 91 er~~~~~~~~~~qv~~Er~kai~~K~KLE~LCRELQkqNK~lKEE~~~~~~eee~kRkelsekFq~tL~dIq~---~meE 167 (359)
-|+.--+.++++-+..|. ..++.+...+||+++.-+..|..+- ...+.. ..--..+.+|.. .|..
T Consensus 1159 R~Ekei~~tk~~~lk~e~---~~L~qq~~~~~k~i~dL~~sL~~~r-------~~~q~~--a~s~~e~~~i~~~v~~vNl 1226 (1822)
T KOG4674|consen 1159 RKEKEIAETKLDTLKREN---ARLKQQVASLNRTIDDLQRSLTAER-------ASSQKS--AVSDDEHKEILEKVEEVNL 1226 (1822)
T ss_pred HhHHHHHhhhHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH-------Hhhccc--hhhhhhhhHHHHHHHHHHH
Confidence 344444445555555543 3578889999999998888777651 111111 111111233333 3333
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHhhHHHH---HHHHHhHHHHHHHHHHHhHHHHHHHHHHHHHH-------------
Q 018258 168 QKDDCLSQLKENEMLRTNLKQLADQYALTEQQ---YAQKLKQKTLELQIGELKIKQHEEKLVQEQSQ------------- 231 (359)
Q Consensus 168 ~~~~~~k~~~EN~~LreKLK~lieQYElRE~h---~~k~lK~KeLE~QL~~AKleq~~e~~~~Ek~q------------- 231 (359)
-.+-|.-++++|...-+|+..|-+..+..... |..-+.+..-+.+...|.+...++-...=+.+
T Consensus 1227 l~EsN~~LRee~~~~~~k~qEl~~~i~kl~~el~plq~~l~el~~e~~~~~ael~~l~~e~~~wK~R~q~L~~k~k~~d~ 1306 (1822)
T KOG4674|consen 1227 LRESNKVLREENEANLEKIQELRDKIEKLNFELAPLQNELKELKAELQEKVAELKKLEEENDRWKQRNQDLLEKYKDSDK 1306 (1822)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCH
Confidence 34666677788888889998888888876655 33345555555555555554333222111111
Q ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhH
Q 018258 232 --MKLYAEQVSQLLATEKNLRLQLTADGEKFQQFQDALVKSNEVFETFKQEIEKMAKSIKELKKENAFLKSKCEKSDFTL 309 (359)
Q Consensus 232 --~k~l~eqv~~l~~tE~eLr~QL~~Y~eKF~EFQdTL~KSNevF~tFKkEMEKMsKKiKkLEKEn~~~k~K~E~sn~aL 309 (359)
...+...|..+...=......+.....+|..|+ .+--.--..|..+....++.+..|+.-+..+...|..-++..
T Consensus 1307 ~~~~kL~~ei~~Lk~el~~ke~~~~el~~~~~~~q---~~~k~qld~l~~e~~~lt~~~~ql~~~~~rL~~~~~e~~~q~ 1383 (1822)
T KOG4674|consen 1307 NDYEKLKSEISRLKEELEEKENLIAELKKELNRLQ---EKIKKQLDELNNEKANLTKELEQLEDLKTRLAAALSEKNAQE 1383 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 112334566666665677788888999999999 444556778889999999999999999999999998888885
Q ss_pred HHH
Q 018258 310 IEL 312 (359)
Q Consensus 310 iem 312 (359)
+++
T Consensus 1384 ~el 1386 (1822)
T KOG4674|consen 1384 LEL 1386 (1822)
T ss_pred HHH
Confidence 443
No 19
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=94.86 E-value=9.9 Score=43.98 Aligned_cols=61 Identities=20% Similarity=0.328 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhH
Q 018258 249 LRLQLTADGEKFQQFQDALVKSNEVFETFKQEIEKMAKSIKELKKENAFLKSKCEKSDFTL 309 (359)
Q Consensus 249 Lr~QL~~Y~eKF~EFQdTL~KSNevF~tFKkEMEKMsKKiKkLEKEn~~~k~K~E~sn~aL 309 (359)
+..++..|..........+...-+-..++...++....++..++-+.......++..+..+
T Consensus 388 ~~~~~~~~~~~l~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 448 (1163)
T COG1196 388 LEAELAEIRNELEELKREIESLEERLERLSERLEDLKEELKELEAELEELQTELEELNEEL 448 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH
Confidence 3333333333333333333333334444444444444444444444444333333333333
No 20
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=94.44 E-value=12 Score=43.05 Aligned_cols=188 Identities=15% Similarity=0.172 Sum_probs=101.0
Q ss_pred HHHHHhhHHHHHHHHhhHHHHHhhHhHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 018258 124 ELQRQNKMLMDECKRVSSEGQNLRLDLSAKFQDAIKDVSIKLEEQKDDCLSQLKENEMLRTNLKQLADQYALTEQQYAQK 203 (359)
Q Consensus 124 ELQkqNK~lKEE~~~~~~eee~kRkelsekFq~tL~dIq~~meE~~~~~~k~~~EN~~LreKLK~lieQYElRE~h~~k~ 203 (359)
-++..++.+.++......+=.+.+. ..-+-+..+..|...|.++...+..-+ .-|...|+.|..|-+.+.+-
T Consensus 738 ~~~~~~~~~~e~v~e~~~~Ike~~~-~~k~~~~~i~~lE~~~~d~~~~re~rl-------kdl~keik~~k~~~e~~~~~ 809 (1174)
T KOG0933|consen 738 KLLDDLKELLEEVEESEQQIKEKER-ALKKCEDKISTLEKKMKDAKANRERRL-------KDLEKEIKTAKQRAEESSKE 809 (1174)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhHhhhhhHhHH-------HHHHHHHHHHHHHHHHHHHH
Confidence 3455555555554432222122221 223345566677777765543332211 11333455666666667777
Q ss_pred HhHHHHHHHHHHHhHHHHHHHHHHHHHHHHH-------HHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 018258 204 LKQKTLELQIGELKIKQHEEKLVQEQSQMKL-------YAE-------QVSQLLATEKNLRLQLTADGEKFQQFQDALVK 269 (359)
Q Consensus 204 lK~KeLE~QL~~AKleq~~e~~~~Ek~q~k~-------l~e-------qv~~l~~tE~eLr~QL~~Y~eKF~EFQdTL~K 269 (359)
++.++.+++...+..++.......-+.++.. |.. .+......-..+..+|+.-.+++.+.-.-|..
T Consensus 810 ~ek~~~e~e~l~lE~e~l~~e~~~~k~~l~~~~~~~~~l~~e~~~l~~kv~~~~~~~~~~~~el~~~k~k~~~~dt~i~~ 889 (1174)
T KOG0933|consen 810 LEKRENEYERLQLEHEELEKEISSLKQQLEQLEKQISSLKSELGNLEAKVDKVEKDVKKAQAELKDQKAKQRDIDTEISG 889 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHhhhHHHhh
Confidence 7777777776666655544333222222222 222 22223334455667777777777776655544
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHH
Q 018258 270 SNEVFETFKQEIEKMAKSIKELKKENAFLKSKCEKSDFTLIELVEERERM 319 (359)
Q Consensus 270 SNevF~tFKkEMEKMsKKiKkLEKEn~~~k~K~E~sn~aLiemaeEr~~~ 319 (359)
.----..+..|.-.|.-.+++|+.|...+.+=+..+-+.+-.+..+..-+
T Consensus 890 ~~~~~e~~~~e~~~~~l~~kkle~e~~~~~~e~~~~~k~v~~l~~k~~wi 939 (1174)
T KOG0933|consen 890 LLTSQEKCLSEKSDGELERKKLEHEVTKLESEKANARKEVEKLLKKHEWI 939 (1174)
T ss_pred hhhHHHHHHHHhhcccchHHHHHhHHHHhhhhHHHHHHHHHHHHHhccch
Confidence 44445555566666666777777777777776666666666666555433
No 21
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=93.57 E-value=13 Score=40.21 Aligned_cols=14 Identities=43% Similarity=0.496 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHhhc
Q 018258 333 LESLCRSLQAERKQ 346 (359)
Q Consensus 333 Le~LCRaLQ~ER~~ 346 (359)
|+.++..||.+|.+
T Consensus 380 l~~~e~~lqEer~E 393 (546)
T PF07888_consen 380 LQMLEEHLQEERME 393 (546)
T ss_pred HHHHHHHHHHHHHH
Confidence 34456677777653
No 22
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=93.56 E-value=5.4 Score=35.97 Aligned_cols=156 Identities=19% Similarity=0.296 Sum_probs=98.3
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHhHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018258 177 KENEMLRTNLKQLADQYALTEQQYAQKLKQKTLELQIGELKIKQH--EEKLVQEQSQMKLYAEQVSQLLATEKNLRLQLT 254 (359)
Q Consensus 177 ~EN~~LreKLK~lieQYElRE~h~~k~lK~KeLE~QL~~AKleq~--~e~~~~Ek~q~k~l~eqv~~l~~tE~eLr~QL~ 254 (359)
-.|..++..+..+..|....|.-= ..+.--|.+. .+++-. .++.+..-..+..+...+....+.-++.|..|.
T Consensus 13 l~~~~lk~~l~k~~~ql~~ke~lg-e~L~~iDFeq----Lkien~~l~~kIeERn~eL~~Lk~~~~~~v~~L~h~keKl~ 87 (177)
T PF13870_consen 13 LKNITLKHQLAKLEEQLRQKEELG-EGLHLIDFEQ----LKIENQQLNEKIEERNKELLKLKKKIGKTVQILTHVKEKLH 87 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc-CcccHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666666666666554421 1222233332 232211 111111122233344455556677789999999
Q ss_pred HHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhHhHH-HHHHHHHHHHHHHHHHHHHHHH
Q 018258 255 ADGEKFQQFQDALVKSNEVFETFKQEIEKMAKSIKELKKENAFLKSKCEK-SDFTLI-ELVEERERMKKQLEKSKNQKEK 332 (359)
Q Consensus 255 ~Y~eKF~EFQdTL~KSNevF~tFKkEMEKMsKKiKkLEKEn~~~k~K~E~-sn~aLi-emaeEr~~~~ke~e~~kkq~ek 332 (359)
.....+..+...|..-.+.+..++.++-.......++.+.+..++.++.. ..+.|+ ++.. ....+..+++.+..
T Consensus 88 ~~~~~~~~l~~~l~~~~~~~~~~r~~l~~~k~~r~k~~~~~~~l~~~~~~~~~P~ll~Dy~~----~~~~~~~l~~~i~~ 163 (177)
T PF13870_consen 88 FLSEELERLKQELKDREEELAKLREELYRVKKERDKLRKQNKKLRQQGGLLGVPALLRDYDK----TKEEVEELRKEIKE 163 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHH----HHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999998877 446665 3422 22233344444444
Q ss_pred HHHHHHHHH
Q 018258 333 LESLCRSLQ 341 (359)
Q Consensus 333 Le~LCRaLQ 341 (359)
|+.-|..++
T Consensus 164 l~rk~~~l~ 172 (177)
T PF13870_consen 164 LERKVEILE 172 (177)
T ss_pred HHHHHHHHH
Confidence 444444443
No 23
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=93.55 E-value=7.5 Score=37.56 Aligned_cols=80 Identities=25% Similarity=0.343 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHH----HHHHHHHHHHHHHHHHH
Q 018258 254 TADGEKFQQFQDALVKSNEVFETFKQEIEKMAKSIKELKKENAFLKSKCEKSDFTLIEL----VEERERMKKQLEKSKNQ 329 (359)
Q Consensus 254 ~~Y~eKF~EFQdTL~KSNevF~tFKkEMEKMsKKiKkLEKEn~~~k~K~E~sn~aLiem----aeEr~~~~ke~e~~kkq 329 (359)
..|..++.++......++..-...+.|+..+...+..|..+...++.+.......|.++ ..++..+...+..+...
T Consensus 191 ~~y~~k~~~l~~~~~~~~~~~~~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~le~~~~~~~~~~~~~i~~le~e 270 (312)
T PF00038_consen 191 EWYQSKLEELRQQSEKSSEELESAKEELKELRRQIQSLQAELESLRAKNASLERQLRELEQRLDEEREEYQAEIAELEEE 270 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhcccccccccccccccccccchhHhHHHHHHhhhhHhhhhhhccccchhhhhhhHHHHHHHHHHHHHHHHHhhhccchh
Confidence 45788888888888888888888888888888888888888888887776666666544 33333334444443333
Q ss_pred HHHH
Q 018258 330 KEKL 333 (359)
Q Consensus 330 ~ekL 333 (359)
+..|
T Consensus 271 l~~l 274 (312)
T PF00038_consen 271 LAEL 274 (312)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 3333
No 24
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=93.05 E-value=14 Score=39.39 Aligned_cols=39 Identities=26% Similarity=0.255 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcH
Q 018258 233 KLYAEQVSQLLATEKNLRLQLTADGEKFQQFQDALVKSN 271 (359)
Q Consensus 233 k~l~eqv~~l~~tE~eLr~QL~~Y~eKF~EFQdTL~KSN 271 (359)
..+.+.+..+.+.|.+.+.+|..|..++..++..|.++|
T Consensus 400 ~ei~e~l~~Lrk~E~eAr~kL~~~~~~L~~ikr~l~k~~ 438 (569)
T PRK04778 400 EKLSEMLQGLRKDELEAREKLERYRNKLHEIKRYLEKSN 438 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 345677888999999999999999999999999999984
No 25
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=92.84 E-value=12 Score=37.78 Aligned_cols=33 Identities=24% Similarity=0.235 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCC
Q 018258 323 LEKSKNQKEKLESLCRSLQAERKQNSVGSNNSD 355 (359)
Q Consensus 323 ~e~~kkq~ekLe~LCRaLQ~ER~~~~~~~~~~~ 355 (359)
+..+.++.++|.+--|.||..-.++.+...+|.
T Consensus 180 vN~L~Kqm~~l~~eKr~Lq~~l~~~~s~~~s~~ 212 (310)
T PF09755_consen 180 VNRLWKQMDKLEAEKRRLQEKLEQPVSAPPSPR 212 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccccCCCCCcc
Confidence 456889999999999999999776555444443
No 26
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=92.75 E-value=21 Score=40.54 Aligned_cols=50 Identities=32% Similarity=0.381 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018258 285 AKSIKELKKENAFLKSKCEKSDFTLIELVEERERMKKQLEKSKNQKEKLE 334 (359)
Q Consensus 285 sKKiKkLEKEn~~~k~K~E~sn~aLiemaeEr~~~~ke~e~~kkq~ekLe 334 (359)
.+....|+.|-..+-.+++....++.-.++....+..+++..-++.++|-
T Consensus 493 ~~~le~l~~El~~l~~e~~~lq~~~~~~~qs~~~~~~~l~~~l~~KD~~~ 542 (980)
T KOG0980|consen 493 AKALESLRQELALLLIELEELQRTLSNLAQSHNNQLAQLEDLLKQKDRLA 542 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHH
Confidence 34444455555555555555555555555555555555555544444443
No 27
>PRK11637 AmiB activator; Provisional
Probab=92.38 E-value=15 Score=37.72 Aligned_cols=27 Identities=7% Similarity=0.035 Sum_probs=13.9
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHh
Q 018258 83 SSKRTFKSEKEFLEFTLKYQQVLAERD 109 (359)
Q Consensus 83 ~~k~~~~ler~~~~~~~~~~qv~~Er~ 109 (359)
..+++..+++++.+..+++..++.+.+
T Consensus 45 ~~~~l~~l~~qi~~~~~~i~~~~~~~~ 71 (428)
T PRK11637 45 NRDQLKSIQQDIAAKEKSVRQQQQQRA 71 (428)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555555554444
No 28
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=91.99 E-value=30 Score=40.53 Aligned_cols=87 Identities=20% Similarity=0.237 Sum_probs=73.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHH
Q 018258 234 LYAEQVSQLLATEKNLRLQLTADGEKFQQFQDALVKSNEVFETFKQEIEKMAKSIKELKKENAFLKSKCEKSDFTLIELV 313 (359)
Q Consensus 234 ~l~eqv~~l~~tE~eLr~QL~~Y~eKF~EFQdTL~KSNevF~tFKkEMEKMsKKiKkLEKEn~~~k~K~E~sn~aLiema 313 (359)
.+...+..|......+.....-....|.++...|.--++.....+.+|+.+.+.+-.|-.+...+..|.+.++..+.++-
T Consensus 953 ~~e~e~~~L~e~~~~~~~k~~E~~~~~~e~~~~~~E~k~~~~~~k~~~e~i~k~~~~lk~~rId~~~K~e~~~~~l~e~~ 1032 (1293)
T KOG0996|consen 953 DTEKELDDLTEELKGLEEKAAELEKEYKEAEESLKEIKKELRDLKSELENIKKSENELKAERIDIENKLEAINGELNEIE 1032 (1293)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHH
Confidence 34456777888888888888888889999999999999999999999999999999999988889999999999998775
Q ss_pred HHHHHHH
Q 018258 314 EERERMK 320 (359)
Q Consensus 314 eEr~~~~ 320 (359)
..-..|.
T Consensus 1033 ~~~~~~~ 1039 (1293)
T KOG0996|consen 1033 SKIKQPE 1039 (1293)
T ss_pred hhhhhHH
Confidence 5444444
No 29
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=91.48 E-value=14 Score=35.69 Aligned_cols=242 Identities=15% Similarity=0.190 Sum_probs=122.4
Q ss_pred HhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHhhHHHHHHHHh---hHHHHHhhHhHHHHHH
Q 018258 79 TRRKSSKRTFKSEKEFLEFTLKYQQVLAERDAAMAVRDKLESLCRELQRQNKMLMDECKRV---SSEGQNLRLDLSAKFQ 155 (359)
Q Consensus 79 ~~r~~~k~~~~ler~~~~~~~~~~qv~~Er~kai~~K~KLE~LCRELQkqNK~lKEE~~~~---~~eee~kRkelsekFq 155 (359)
.+-.-...+..+.+.+..+......++.+++..-..-+-+..=|.+....+..+..+.... ...+-..|.++..+.+
T Consensus 48 ~~~~ye~el~~lr~~id~~~~eka~l~~e~~~l~~e~~~~r~k~e~e~~~~~~le~el~~lrk~ld~~~~~r~~le~~i~ 127 (312)
T PF00038_consen 48 IKEMYEEELRELRRQIDDLSKEKARLELEIDNLKEELEDLRRKYEEELAERKDLEEELESLRKDLDEETLARVDLENQIQ 127 (312)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccchhhHHHHhHHhhhhHHHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHhHHHHHHH
Confidence 3334444555555666666666667776666643332222222223333333333333222 2234445566666666
Q ss_pred HHHHHHHHHHHhhhhhhhhh----------HH----HHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHhHHHH
Q 018258 156 DAIKDVSIKLEEQKDDCLSQ----------LK----ENEMLRTNLKQLADQYALTEQQYAQKLKQKTLELQIGELKIKQH 221 (359)
Q Consensus 156 ~tL~dIq~~meE~~~~~~k~----------~~----EN~~LreKLK~lieQYElRE~h~~k~lK~KeLE~QL~~AKleq~ 221 (359)
+.-.+|.-....+ ...... .. -...|..-|..+-.+|+..-..+. .+++. +...++...
T Consensus 128 ~L~eEl~fl~~~h-eeEi~~L~~~~~~~~~~e~~~~~~~dL~~~L~eiR~~ye~~~~~~~-----~e~e~-~y~~k~~~l 200 (312)
T PF00038_consen 128 SLKEELEFLKQNH-EEEIEELREQIQSSVTVEVDQFRSSDLSAALREIRAQYEEIAQKNR-----EELEE-WYQSKLEEL 200 (312)
T ss_dssp HHHHHHHHHHHHH-HHHHHTTSTT----------------HHHHHHHHHHHHHHHHHHHH-----HHHHH-HHHHHHHHH
T ss_pred HHHHHHHHHHhhh-hhhhhhhhhccccccceeecccccccchhhhhhHHHHHHHHHhhhh-----hhhhh-hcccccccc
Confidence 6655554322211 111100 11 123577777777778874332222 12322 223334333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018258 222 EEKLVQEQSQMKLYAEQVSQLLATEKNLRLQLTADGEKFQQFQDALVKSNEVFETFKQEIEKMAKSIKELKKENAFLKSK 301 (359)
Q Consensus 222 ~e~~~~Ek~q~k~l~eqv~~l~~tE~eLr~QL~~Y~eKF~EFQdTL~KSNevF~tFKkEMEKMsKKiKkLEKEn~~~k~K 301 (359)
..........+....+.+..+...=..|+.+|...-.+-..+...|.- +=..|..++......|..||.+...++..
T Consensus 201 ~~~~~~~~~~~~~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~---le~~~~~~~~~~~~~i~~le~el~~l~~~ 277 (312)
T PF00038_consen 201 RQQSEKSSEELESAKEELKELRRQIQSLQAELESLRAKNASLERQLRE---LEQRLDEEREEYQAEIAELEEELAELREE 277 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccccchhHhHHHHHHhhhhHhhhhhhccccchhhhhhhHHH---HHHHHHHHHHHHHHhhhccchhHHHHHHH
Confidence 322222122222223333333333344444444444444444433332 22344567777788888899999999888
Q ss_pred HHhhhHhHHHHHHHHHHHHHHHHHHHHHH
Q 018258 302 CEKSDFTLIELVEERERMKKQLEKSKNQK 330 (359)
Q Consensus 302 ~E~sn~aLiemaeEr~~~~ke~e~~kkq~ 330 (359)
....-...-++..-+..++.+|..+++=+
T Consensus 278 ~~~~~~ey~~Ll~~K~~Ld~EIatYR~LL 306 (312)
T PF00038_consen 278 MARQLREYQELLDVKLALDAEIATYRKLL 306 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 88888888888888888888888877643
No 30
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=91.17 E-value=26 Score=38.28 Aligned_cols=212 Identities=20% Similarity=0.286 Sum_probs=105.2
Q ss_pred HHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHhhHHHHHHHHhhHHHHHhhHhHHHHHHHHHHHHHHHHHhhhhhh----
Q 018258 97 FTLKYQQVLAERDAAMAVRDKLESLCRELQRQNKMLMDECKRVSSEGQNLRLDLSAKFQDAIKDVSIKLEEQKDDC---- 172 (359)
Q Consensus 97 ~~~~~~qv~~Er~kai~~K~KLE~LCRELQkqNK~lKEE~~~~~~eee~kRkelsekFq~tL~dIq~~meE~~~~~---- 172 (359)
++.-+.+|+.|||..+. +|..=-.=+|..+..+-++...+..+.+. -..-...+...|.++..+|.+.....
T Consensus 2 l~e~l~qlq~Erd~ya~---~lk~e~a~~qqr~~qmseev~~L~eEk~~-~~~~V~eLE~sL~eLk~q~~~~~~~~~pa~ 77 (617)
T PF15070_consen 2 LMESLKQLQAERDQYAQ---QLKEESAQWQQRMQQMSEEVRTLKEEKEH-DISRVQELERSLSELKNQMAEPPPPEPPAG 77 (617)
T ss_pred hHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhcccCCcccccc
Confidence 44557788999997431 11111222444444444444433322221 11225667777888888887543211
Q ss_pred -----hhhHHHHHHHHHHHHHHHHHHhhHH---HHHHHHHhHHHHHHHHHHH--hHHHHHHHHHHHHHHHHHHH------
Q 018258 173 -----LSQLKENEMLRTNLKQLADQYALTE---QQYAQKLKQKTLELQIGEL--KIKQHEEKLVQEQSQMKLYA------ 236 (359)
Q Consensus 173 -----~k~~~EN~~LreKLK~lieQYElRE---~h~~k~lK~KeLE~QL~~A--Kleq~~e~~~~Ek~q~k~l~------ 236 (359)
..+..+-..|+..+..|..+|...- ..++.+.. +.+.+|.+. .++...+.. ..+.+++.
T Consensus 78 pse~E~~Lq~E~~~L~kElE~L~~qlqaqv~~ne~Ls~L~~--EqEerL~ELE~~le~~~e~~---~D~~kLLe~lqsdk 152 (617)
T PF15070_consen 78 PSEVEQQLQAEAEHLRKELESLEEQLQAQVENNEQLSRLNQ--EQEERLAELEEELERLQEQQ---EDRQKLLEQLQSDK 152 (617)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHH---HHHHHHHhhhcccc
Confidence 1122344457788888888877542 23333222 223333322 121111111 11222221
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHH
Q 018258 237 EQVSQLLATEKNLRLQLTADGEKFQQFQDA---LVKSNEVFETFKQEIEKMAKSIKELKKENAFLKSKCEKSDFTLIELV 313 (359)
Q Consensus 237 eqv~~l~~tE~eLr~QL~~Y~eKF~EFQdT---L~KSNevF~tFKkEMEKMsKKiKkLEKEn~~~k~K~E~sn~aLiema 313 (359)
.-++-...+-.+|+.||.---+.|-.+..- |+.+-....-.+ ..|.+++-.|+-+...|+-+++..+..++.+.
T Consensus 153 ~t~SRAlsQN~eLK~QL~Elq~~Fv~ltne~~elt~~lq~Eq~~~---keL~~kl~~l~~~l~~~~e~le~K~qE~~~Lq 229 (617)
T PF15070_consen 153 ATASRALSQNRELKEQLAELQDAFVKLTNENMELTSALQSEQHVK---KELQKKLGELQEKLHNLKEKLELKSQEAQSLQ 229 (617)
T ss_pred hHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 234555666778888888888888764321 111111222222 23455666677777777777777766666665
Q ss_pred HHHHHHH
Q 018258 314 EERERMK 320 (359)
Q Consensus 314 eEr~~~~ 320 (359)
..+....
T Consensus 230 ~q~dq~~ 236 (617)
T PF15070_consen 230 EQRDQYL 236 (617)
T ss_pred HHHHHHH
Confidence 5544433
No 31
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=90.86 E-value=30 Score=38.43 Aligned_cols=28 Identities=4% Similarity=0.150 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHhHHHH
Q 018258 182 LRTNLKQLADQYALTEQQYAQKLKQKTL 209 (359)
Q Consensus 182 LreKLK~lieQYElRE~h~~k~lK~KeL 209 (359)
+.+.+-.|+.|-..+++.+-++|..+.=
T Consensus 466 ~Qeqn~kL~~el~ekdd~nfklm~e~~~ 493 (698)
T KOG0978|consen 466 MQEQNQKLLQELREKDDKNFKLMSERIK 493 (698)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 6666666777777777776666665543
No 32
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=90.84 E-value=19 Score=36.18 Aligned_cols=138 Identities=18% Similarity=0.230 Sum_probs=81.2
Q ss_pred HHHHHHHHHHhhHHHHHHHHhhHHHHHhhHhHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHhhHHH
Q 018258 119 ESLCRELQRQNKMLMDECKRVSSEGQNLRLDLSAKFQDAIKDVSIKLEEQKDDCLSQLKENEMLRTNLKQLADQYALTEQ 198 (359)
Q Consensus 119 E~LCRELQkqNK~lKEE~~~~~~eee~kRkelsekFq~tL~dIq~~meE~~~~~~k~~~EN~~LreKLK~lieQYElRE~ 198 (359)
..=||.|..+|..|..|.-....+-. .+-++-+..|.|+-.++.+ .|.....-..+|..|...+..|++.--
T Consensus 166 q~Klk~LEeEN~~LR~Ea~~L~~et~----~~EekEqqLv~dcv~QL~~---An~qia~LseELa~k~Ee~~rQQEEIt- 237 (306)
T PF04849_consen 166 QEKLKSLEEENEQLRSEASQLKTETD----TYEEKEQQLVLDCVKQLSE---ANQQIASLSEELARKTEENRRQQEEIT- 237 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHh----hccHHHHHHHHHHHHHhhh---cchhHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 33366677777777777666554322 2345667777777655543 344445678889999999999988522
Q ss_pred HHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHH
Q 018258 199 QYAQKLKQKTLELQIGELKIKQHEEKLVQEQSQMKLYAEQVSQLLATEKNLRLQLTADGEKFQQFQDALVKSNEVFETFK 278 (359)
Q Consensus 199 h~~k~lK~KeLE~QL~~AKleq~~e~~~~Ek~q~k~l~eqv~~l~~tE~eLr~QL~~Y~eKF~EFQdTL~KSNevF~tFK 278 (359)
+++ .|+. .+++.-.....|... +...+......-..|..+|..+.+||.++...|.-+.+---+||
T Consensus 238 ---~Ll------sqiv--dlQ~r~k~~~~EnEe---L~q~L~~ske~Q~~L~aEL~elqdkY~E~~~mL~EaQEElk~lR 303 (306)
T PF04849_consen 238 ---SLL------SQIV--DLQQRCKQLAAENEE---LQQHLQASKESQRQLQAELQELQDKYAECMAMLHEAQEELKTLR 303 (306)
T ss_pred ---HHH------HHHH--HHHHHHHHHhhhHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 211 1222 122111112222222 22233333444566888899999999999988887776555544
No 33
>PRK03918 chromosome segregation protein; Provisional
Probab=90.36 E-value=32 Score=37.91 Aligned_cols=22 Identities=23% Similarity=0.428 Sum_probs=13.3
Q ss_pred hhHhHHHHHHHHHHHHHHHHHh
Q 018258 146 LRLDLSAKFQDAIKDVSIKLEE 167 (359)
Q Consensus 146 kRkelsekFq~tL~dIq~~meE 167 (359)
.+.++..+|...|..+...+..
T Consensus 449 ~~~el~~~~~~ei~~l~~~~~~ 470 (880)
T PRK03918 449 HRKELLEEYTAELKRIEKELKE 470 (880)
T ss_pred hHHHHHHHHHHHHHHHHHHHHH
Confidence 3555666666666666665553
No 34
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=90.27 E-value=21 Score=37.66 Aligned_cols=60 Identities=18% Similarity=0.324 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh------hHhHH---HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018258 284 MAKSIKELKKENAFLKSKCEKS------DFTLI---EL-VEERERMKKQLEKSKNQKEKLESLCRSLQAE 343 (359)
Q Consensus 284 MsKKiKkLEKEn~~~k~K~E~s------n~aLi---em-aeEr~~~~ke~e~~kkq~ekLe~LCRaLQ~E 343 (359)
+=|+|.+||-|...|..|++.- -+.|. +| ..+-+...-++..++..+++|..-|++-|.+
T Consensus 206 LwKrmdkLe~ekr~Lq~KlDqpvs~p~~prdia~~~~~~gD~a~~~~~hi~~l~~EveRlrt~l~~Aqk~ 275 (552)
T KOG2129|consen 206 LWKRMDKLEQEKRYLQKKLDQPVSTPSLPRDIAKIPDVHGDEAAAEKLHIDKLQAEVERLRTYLSRAQKS 275 (552)
T ss_pred HHHHHHHHHHHHHHHHHHhcCcccCCCchhhhhcCccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5688889999999999998541 11111 01 2344445556666777777777777665543
No 35
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=90.16 E-value=45 Score=39.22 Aligned_cols=67 Identities=24% Similarity=0.349 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018258 272 EVFETFKQEIEKMAKSIKELKKENAFLKSKCEKSDFTLIELVEERERMKKQLEKSKNQKEKLESLCR 338 (359)
Q Consensus 272 evF~tFKkEMEKMsKKiKkLEKEn~~~k~K~E~sn~aLiemaeEr~~~~ke~e~~kkq~ekLe~LCR 338 (359)
......+.++..+.-.++..+|+-..++......+..+-+.-.+-..+...+...+..-.=|.+|.|
T Consensus 542 ~~l~~~k~~l~~~k~e~~~~~k~l~~~~~e~~~~~~~~~~~rqrveE~ks~~~~~~s~~kVl~al~r 608 (1293)
T KOG0996|consen 542 TELDDLKEELPSLKQELKEKEKELPKLRKEERNLKSQLNKLRQRVEEAKSSLSSSRSRNKVLDALMR 608 (1293)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHH
Confidence 3445555555555555555666555555555555554444444444444444444444444555544
No 36
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=90.05 E-value=46 Score=39.22 Aligned_cols=180 Identities=17% Similarity=0.200 Sum_probs=85.0
Q ss_pred hHHHHHHHHHHHhhHHHHHHHHhhHHHHHhhHhHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHhhH
Q 018258 117 KLESLCRELQRQNKMLMDECKRVSSEGQNLRLDLSAKFQDAIKDVSIKLEEQKDDCLSQLKENEMLRTNLKQLADQYALT 196 (359)
Q Consensus 117 KLE~LCRELQkqNK~lKEE~~~~~~eee~kRkelsekFq~tL~dIq~~meE~~~~~~k~~~EN~~LreKLK~lieQYElR 196 (359)
.++.+-+||+.....++.+-. +-+| .-..=.|..++.+..++.+-.+...++...+..+.+.|+.+ .+|...
T Consensus 462 ~~~~~~keL~e~i~~lk~~~~------el~~-~q~~l~q~~~ke~~ek~~~~~~~~~~l~~~~~~~~eele~~-q~~~~~ 533 (1317)
T KOG0612|consen 462 ELEEMDKELEETIEKLKSEES------ELQR-EQKALLQHEQKEVEEKLSEEEAKKRKLEALVRQLEEELEDA-QKKNDN 533 (1317)
T ss_pred hHHHHHHHHHHHHHHHHHHHH------HHHH-HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
Confidence 555566666554444433211 1111 11223555666666666655555555556666666666666 333322
Q ss_pred -HHHHHHHHh-HHHHHHHHHHHhHHHHHHH----HH--------HHH-------HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018258 197 -EQQYAQKLK-QKTLELQIGELKIKQHEEK----LV--------QEQ-------SQMKLYAEQVSQLLATEKNLRLQLTA 255 (359)
Q Consensus 197 -E~h~~k~lK-~KeLE~QL~~AKleq~~e~----~~--------~Ek-------~q~k~l~eqv~~l~~tE~eLr~QL~~ 255 (359)
-.+..++.. .+.|+.+..++..+-.... .. ++. ..+..+.+-...+.+....++.-+..
T Consensus 534 ~~~~~~kv~~~rk~le~~~~d~~~e~~~~~kl~~~~~e~~~~iq~~~e~~~~~~d~l~~le~~k~~ls~~~~~~~~~~e~ 613 (1317)
T KOG0612|consen 534 AADSLEKVNSLRKQLEEAELDMRAESEDAGKLRKHSKELSKQIQQELEENRDLEDKLSLLEESKSKLSKENKKLRSELEK 613 (1317)
T ss_pred HHHHHhhHHHHHHHHHHhhhhhhhhHHHHhhHhhhhhhhhHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 122222222 3345554444442221111 00 000 11112222223344555666666666
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018258 256 DGEKFQQFQDALVKSNEVFETFKQEIEKMAKSIKELKKENAFLKSKCEK 304 (359)
Q Consensus 256 Y~eKF~EFQdTL~KSNevF~tFKkEMEKMsKKiKkLEKEn~~~k~K~E~ 304 (359)
|.....+.-..+.---+-|.+.....+...+.+++++-+......++..
T Consensus 614 ~~~~~~~~~e~~~~l~~~i~sL~~~~~~~~~~l~k~~el~r~~~e~~~~ 662 (1317)
T KOG0612|consen 614 ERRQRTEISEIIAELKEEISSLEETLKAGKKELLKVEELKRENQERISD 662 (1317)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Confidence 6666666666666666666666666666666666555544444444333
No 37
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=89.85 E-value=0.095 Score=57.03 Aligned_cols=60 Identities=27% Similarity=0.323 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018258 279 QEIEKMAKSIKELKKENAFLKSKCEKSDFTLIELVEERERMKKQLEKSKNQKEKLESLCRSLQA 342 (359)
Q Consensus 279 kEMEKMsKKiKkLEKEn~~~k~K~E~sn~aLiemaeEr~~~~ke~e~~kkq~ekLe~LCRaLQ~ 342 (359)
+.|..-..+++.||++|..+... +..|-.+..-...++++...++.+++.+++++..|..
T Consensus 250 k~l~~ql~~i~~LE~en~~l~~E----lk~Lr~~~~n~elLeEe~~sLq~kl~~~E~~~~el~~ 309 (722)
T PF05557_consen 250 KELKEQLAHIRELEKENRRLREE----LKHLRQSQENVELLEEEKRSLQRKLERLEELEEELAE 309 (722)
T ss_dssp ----------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445556788999999888764 3455556666677777888888888888877666554
No 38
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=89.79 E-value=15 Score=33.14 Aligned_cols=86 Identities=21% Similarity=0.374 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHHHHHHHHHHH
Q 018258 251 LQLTADGEKFQQFQDALVKSNEVFETFKQEIEKMAKSIKELKKENAFLKSKCEKSDFTLIELVEERERMKKQLEKSKNQK 330 (359)
Q Consensus 251 ~QL~~Y~eKF~EFQdTL~KSNevF~tFKkEMEKMsKKiKkLEKEn~~~k~K~E~sn~aLiemaeEr~~~~ke~e~~kkq~ 330 (359)
..+.....-+..+.+.....++.|.++...++.....++.+.++...+...+......+..+......+...+..+..++
T Consensus 102 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 181 (191)
T PF04156_consen 102 ERIQELESELEKLKEDLQELRELLKSVEERLDSLDESIKELEKEIRELQKELQDSREEVQELRSQLERLQENLQQLEEKI 181 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333334444444444455555555555555555555555555553333333344444343333333333344444
Q ss_pred HHHHHH
Q 018258 331 EKLESL 336 (359)
Q Consensus 331 ekLe~L 336 (359)
..++.+
T Consensus 182 ~~~~~l 187 (191)
T PF04156_consen 182 QELQEL 187 (191)
T ss_pred HHHHHH
Confidence 444333
No 39
>PRK02224 chromosome segregation protein; Provisional
Probab=89.57 E-value=38 Score=37.55 Aligned_cols=51 Identities=10% Similarity=0.153 Sum_probs=25.3
Q ss_pred chhHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhHH-HHHHHhHHHHHHHHHH
Q 018258 76 NTETRRKSSKRTFKSEKEFLEFTLKYQQVLAERDAA-MAVRDKLESLCRELQR 127 (359)
Q Consensus 76 ~~~~~r~~~k~~~~ler~~~~~~~~~~qv~~Er~ka-i~~K~KLE~LCRELQk 127 (359)
.+...+..-..++-+ ..+.++..++......-... -.++..++.|.++|..
T Consensus 147 ~p~~R~~ii~~l~~l-~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 198 (880)
T PRK02224 147 TPSDRQDMIDDLLQL-GKLEEYRERASDARLGVERVLSDQRGSLDQLKAQIEE 198 (880)
T ss_pred CHHHHHHHHHHHhCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566666777766 55556655555533322221 1234444444444433
No 40
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=89.40 E-value=62 Score=39.74 Aligned_cols=227 Identities=16% Similarity=0.194 Sum_probs=123.4
Q ss_pred hhhhhhhhhhhhHHHHHHHHHHHHHHHHHhH----HHHHHHhHHHHHHHHH---HHhhHHHHHHHHhhHHHHHhhHhHHH
Q 018258 80 RRKSSKRTFKSEKEFLEFTLKYQQVLAERDA----AMAVRDKLESLCRELQ---RQNKMLMDECKRVSSEGQNLRLDLSA 152 (359)
Q Consensus 80 ~r~~~k~~~~ler~~~~~~~~~~qv~~Er~k----ai~~K~KLE~LCRELQ---kqNK~lKEE~~~~~~eee~kRkelse 152 (359)
++-..+.+.+++.++..+......+..++.+ ..+++.||+.|--.+- +++.+|.+-+.-.... -.+-+....
T Consensus 649 ~~E~~~~~~~l~e~~~~l~~ev~~ir~~l~k~~~~~~fA~ekle~L~~~ie~~K~e~~tL~er~~~l~~~-i~~~~q~~~ 727 (1822)
T KOG4674|consen 649 KKEKRENLKKLQEDFDSLQKEVTAIRSQLEKLKNELNLAKEKLENLEKNLELTKEEVETLEERNKNLQST-ISKQEQTVH 727 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 4445566677777777777777777766665 4688888888765542 1222222111100000 000000111
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHH-HhHHHHHHHH-------HHH--hHHHHH
Q 018258 153 KFQDAIKDVSIKLEEQKDDCLSQLKENEMLRTNLKQLADQYALTEQQYAQK-LKQKTLELQI-------GEL--KIKQHE 222 (359)
Q Consensus 153 kFq~tL~dIq~~meE~~~~~~k~~~EN~~LreKLK~lieQYElRE~h~~k~-lK~KeLE~QL-------~~A--Kleq~~ 222 (359)
.|-.-|......+.--..+-..+.+|+..|+.=.+.|...|+.-...++.+ +-...|+.+. ... ++++..
T Consensus 728 ~~s~eL~~a~~k~~~le~ev~~LKqE~~ll~~t~~rL~~e~~~l~~e~~~L~~~l~~lQt~~~~~e~s~~~~k~~~e~~i 807 (1822)
T KOG4674|consen 728 TLSQELLSANEKLEKLEAELSNLKQEKLLLKETEERLSQELEKLSAEQESLQLLLDNLQTQKNELEESEMATKDKCESRI 807 (1822)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222222222222221112223346788888887777777776433333332 2233333332 222 233334
Q ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018258 223 EKLVQEQSQM-KLYAEQVSQLLATEKNLRLQLTADGEKFQQFQDALVKSNEVFETFKQEIEKMAKSIKELKKENAFLKSK 301 (359)
Q Consensus 223 e~~~~Ek~q~-k~l~eqv~~l~~tE~eLr~QL~~Y~eKF~EFQdTL~KSNevF~tFKkEMEKMsKKiKkLEKEn~~~k~K 301 (359)
..+..+-..+ +.+.+.+..+..-...+-.+|.-|.-..+++..-+.+-=.--+....+++.|.-++..|++.....+.+
T Consensus 808 ~eL~~el~~lk~klq~~~~~~r~l~~~~~~~l~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~le~k~~eL~k~l~~~~~~ 887 (1822)
T KOG4674|consen 808 KELERELQKLKKKLQEKSSDLRELTNSLEKQLENAQNLVDELESELKSLLTSLDSVSTNIAKLEIKLSELEKRLKSAKTQ 887 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 4444443333 335566666776677777788888777777776666666666677777777777888888887777777
Q ss_pred HHhhhH
Q 018258 302 CEKSDF 307 (359)
Q Consensus 302 ~E~sn~ 307 (359)
+...+.
T Consensus 888 ~~~l~~ 893 (1822)
T KOG4674|consen 888 LLNLDS 893 (1822)
T ss_pred Hhhccc
Confidence 766664
No 41
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=87.75 E-value=53 Score=36.93 Aligned_cols=82 Identities=21% Similarity=0.356 Sum_probs=43.1
Q ss_pred HHHHHHHhHHHHHHHHHHHhh-------HHHHHHHHhhHHHHHhhHhHHHHHHHHHH--HHHHHHHhhhhh---------
Q 018258 110 AAMAVRDKLESLCRELQRQNK-------MLMDECKRVSSEGQNLRLDLSAKFQDAIK--DVSIKLEEQKDD--------- 171 (359)
Q Consensus 110 kai~~K~KLE~LCRELQkqNK-------~lKEE~~~~~~eee~kRkelsekFq~tL~--dIq~~meE~~~~--------- 171 (359)
++..+++||+.|--|+-|.|- .++|... .-..++..+|....+ +|..+|+--+..
T Consensus 480 ~~~gLk~kL~~Lr~E~sKa~~~~~~~~~~L~eK~~-------kLk~Efnkkl~ea~n~p~lk~Kle~Lk~~~~~~~~s~g 552 (762)
T PLN03229 480 IAMGLQERLENLREEFSKANSQDQLMHPVLMEKIE-------KLKDEFNKRLSRAPNYLSLKYKLDMLNEFSRAKALSEK 552 (762)
T ss_pred hhhhHHHHHHHHHHHHHhcccccccccHHHHHHHH-------HHHHHHHHhhhcccccHHHHHHHHHHHHHHHhhhhccc
Confidence 456889999988878888643 2444322 222223333333111 122222211111
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHhhHHH
Q 018258 172 CLSQLKENEMLRTNLKQLADQYALTEQ 198 (359)
Q Consensus 172 ~~k~~~EN~~LreKLK~lieQYElRE~ 198 (359)
..+......+|.+||...+++-+.+++
T Consensus 553 ~~~a~~Lk~ei~kki~e~~~~~~~kek 579 (762)
T PLN03229 553 KSKAEKLKAEINKKFKEVMDRPEIKEK 579 (762)
T ss_pred chhhhhhhHHHHHHHHHhcccHHHHHH
Confidence 112344567888999997777776655
No 42
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=86.79 E-value=69 Score=37.31 Aligned_cols=215 Identities=20% Similarity=0.167 Sum_probs=114.0
Q ss_pred hhhhhhhhhhhHHHHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHhhHHHHHHHHhhHHHHHhhHh------HHHHH
Q 018258 81 RKSSKRTFKSEKEFLEFTLKYQQVLAERDAAMAVRDKLESLCRELQRQNKMLMDECKRVSSEGQNLRLD------LSAKF 154 (359)
Q Consensus 81 r~~~k~~~~ler~~~~~~~~~~qv~~Er~kai~~K~KLE~LCRELQkqNK~lKEE~~~~~~eee~kRke------lsekF 154 (359)
.+..-+...|+++..+++.++..++.+++.+=..-++++..-|+|+.+...++-.......+=-..+.. =+..+
T Consensus 657 ~s~d~~ie~le~e~~~l~~~~~~l~~~~~~~e~~l~e~~~~~~~l~~~~~q~~~~~~~~~~em~el~n~~e~~~~~~~~~ 736 (1074)
T KOG0250|consen 657 FSFDDEIEDLEREASRLQKEILELENQRREAEKNLEELEKKLRELSEHIEQIKRRIRKKRAEMTELKNTAEEKQVDISKL 736 (1074)
T ss_pred hhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcchhhh
Confidence 456678899999999999999999999999988888999999999999888877765433321111110 00111
Q ss_pred HHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHH--hHHHHHHHHHHHHHHH
Q 018258 155 QDAIKDVSIKLEEQKDDCLSQLKENEMLRTNLKQLADQYALTEQQYAQKLKQKTLELQIGEL--KIKQHEEKLVQEQSQM 232 (359)
Q Consensus 155 q~tL~dIq~~meE~~~~~~k~~~EN~~LreKLK~lieQYElRE~h~~k~lK~KeLE~QL~~A--Kleq~~e~~~~Ek~q~ 232 (359)
+....+|...+.+- .+.....++++.=+++-+ .+..+++..++.- +|+....++......+
T Consensus 737 ~~l~~ei~~~~~eI--------e~~~~~~e~l~~e~e~~~---------~e~~e~~~~~~~~~~~l~~e~~~l~~l~~el 799 (1074)
T KOG0250|consen 737 EDLAREIKKKEKEI--------EEKEAPLEKLKEELEHIE---------LEAQELEEYYAAGREKLQGEISKLDALKEEL 799 (1074)
T ss_pred HHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 11112222222111 111111111111111111 1222222222222 2222222222222111
Q ss_pred H----HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018258 233 K----LYAEQVSQLLATEKNLRLQL-------TADGEKFQQFQDALVKSNEVFETFKQEIEKMAKSIKELKKENAFLKSK 301 (359)
Q Consensus 233 k----~l~eqv~~l~~tE~eLr~QL-------~~Y~eKF~EFQdTL~KSNevF~tFKkEMEKMsKKiKkLEKEn~~~k~K 301 (359)
+ .+..........|..++.-| ..|...=...++...|.+..|-.-..|++.|.+-...+-+++.-+++.
T Consensus 800 ~~r~dk~~s~e~~~~HyE~~~K~~l~~l~~~E~~~~~~e~~~~e~~~ka~~~cp~~~~ei~~~~~~~~eik~ei~rlk~~ 879 (1074)
T KOG0250|consen 800 KLREDKLRSAEDEKRHYEDKLKSRLEELKQKEVEKVNLEEPRAEEDQKARTECPEEGIEIEALGKTVAEIKREIKRLKRQ 879 (1074)
T ss_pred HHHHHHHhhhhhhhhhHHHHHHHhhHHHHHHHHHHHhhhcchhhhCchhhhhCccccchhhcccchHHHHHHHHHHHHHH
Confidence 1 12222223333444444211 122233345778888999999888889999988888888888888877
Q ss_pred HHhhhHhHHHH
Q 018258 302 CEKSDFTLIEL 312 (359)
Q Consensus 302 ~E~sn~aLiem 312 (359)
+..+-..+.++
T Consensus 880 i~~~ee~~~~~ 890 (1074)
T KOG0250|consen 880 IQMCEESLGEL 890 (1074)
T ss_pred HHHHHHhcchH
Confidence 65555555444
No 43
>PRK11637 AmiB activator; Provisional
Probab=86.54 E-value=41 Score=34.45 Aligned_cols=76 Identities=12% Similarity=0.118 Sum_probs=46.4
Q ss_pred hhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018258 268 VKSNEVFETFKQEIEKMAKSIKELKKENAFLKSKCEKSDFTLIELVEERERMKKQLEKSKNQKEKLESLCRSLQAE 343 (359)
Q Consensus 268 ~KSNevF~tFKkEMEKMsKKiKkLEKEn~~~k~K~E~sn~aLiemaeEr~~~~ke~e~~kkq~ekLe~LCRaLQ~E 343 (359)
..-...-.....+...+......++.+...|...-..-+..+..+..+......++..+.....+|.+++..++.+
T Consensus 180 ~~L~~~k~~le~~~~~l~~~~~e~~~~k~~L~~~k~e~~~~l~~L~~~~~~~~~~l~~l~~~~~~L~~~I~~l~~~ 255 (428)
T PRK11637 180 EELAAQKAELEEKQSQQKTLLYEQQAQQQKLEQARNERKKTLTGLESSLQKDQQQLSELRANESRLRDSIARAERE 255 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444444444455555555555555555555555566666666666777777788888888888877643
No 44
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=86.31 E-value=71 Score=36.93 Aligned_cols=58 Identities=21% Similarity=0.267 Sum_probs=39.3
Q ss_pred HHHHHHHHHHhhcHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHH
Q 018258 258 EKFQQFQDALVKSNE-VFETFKQEIEKMAKSIKELKKENAFLKSKCEKSDFTLIELVEE 315 (359)
Q Consensus 258 eKF~EFQdTL~KSNe-vF~tFKkEMEKMsKKiKkLEKEn~~~k~K~E~sn~aLiemaeE 315 (359)
+-..++++-|.-||. +-.-+++|++..+-.++.|++....-..-.-.-+++|++.-+=
T Consensus 475 Ealee~~EQL~Esn~ele~DLreEld~~~g~~kel~~r~~aaqet~yDrdqTI~KfRel 533 (1243)
T KOG0971|consen 475 EALEEMNEQLQESNRELELDLREELDMAKGARKELQKRVEAAQETVYDRDQTIKKFREL 533 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 344566677777774 6677889999888888888887766555544555566554443
No 45
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=85.95 E-value=9 Score=40.59 Aligned_cols=70 Identities=23% Similarity=0.391 Sum_probs=60.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018258 275 ETFKQEIEKMAKSIKELKKENAFLKSKCEKSDFTLIELV-EERERMKKQLEKSKNQKEKLESLCRSLQAER 344 (359)
Q Consensus 275 ~tFKkEMEKMsKKiKkLEKEn~~~k~K~E~sn~aLiema-eEr~~~~ke~e~~kkq~ekLe~LCRaLQ~ER 344 (359)
-..+.+|..+.+..+.|-+||..|+.|-...+..|-.-+ .++..+.++.+.++.+..+|.++...|+.+-
T Consensus 69 k~~r~~~~~l~~~N~~l~~eN~~L~~r~~~id~~i~~av~~~~~~~~~~~~ql~~~~~~~~~~l~~l~~~l 139 (472)
T TIGR03752 69 KELRKRLAKLISENEALKAENERLQKREQSIDQQIQQAVQSETQELTKEIEQLKSERQQLQGLIDQLQRRL 139 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345778888999999999999999999888888887665 6788889999999999999999999998764
No 46
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=85.86 E-value=64 Score=36.01 Aligned_cols=62 Identities=23% Similarity=0.253 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhH
Q 018258 241 QLLATEKNLRLQLTADGEKFQQFQDALVKSNEVFETFKQEIEKMAKSIKELKKENAFLKSKCEKSDFTL 309 (359)
Q Consensus 241 ~l~~tE~eLr~QL~~Y~eKF~EFQdTL~KSNevF~tFKkEMEKMsKKiKkLEKEn~~~k~K~E~sn~aL 309 (359)
.+.+.=..|+.+++-+..++.+++..+.. -.-|++.+.++.++||-|...+++|.+..+..-
T Consensus 563 e~~~~~~~Lq~~~ek~~~~le~i~~~~~e-------~~~ele~~~~k~~rleEE~e~L~~kle~~k~~~ 624 (698)
T KOG0978|consen 563 EAKQSLEDLQIELEKSEAKLEQIQEQYAE-------LELELEIEKFKRKRLEEELERLKRKLERLKKEE 624 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 34444556666777776666666654443 346889999999999999999999987765543
No 47
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.73 E-value=71 Score=36.41 Aligned_cols=199 Identities=14% Similarity=0.175 Sum_probs=99.6
Q ss_pred HHHhhHhHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHh--HHH
Q 018258 143 GQNLRLDLSAKFQDAIKDVSIKLEEQKDDCLSQLKENEMLRTNLKQLADQYALTEQQYAQKLKQKTLELQIGELK--IKQ 220 (359)
Q Consensus 143 ee~kRkelsekFq~tL~dIq~~meE~~~~~~k~~~EN~~LreKLK~lieQYElRE~h~~k~lK~KeLE~QL~~AK--leq 220 (359)
.-+.-..+..+|.+.|.....+++.-+.....+.-+|+.|.+++..++.+...-..+|+ .|..||--+. .-.
T Consensus 651 ~~e~l~~~~~kyK~lI~~lD~~~e~lkQ~~~~l~~e~eeL~~~vq~~~s~hsql~~q~~------~Lk~qLg~~~~~~~~ 724 (970)
T KOG0946|consen 651 YHEELDDIQQKYKGLIRELDYQIENLKQMEKELQVENEELEEEVQDFISEHSQLKDQLD------LLKNQLGIISSKQRD 724 (970)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHhcccccchhh
Confidence 33444556777888888888888766666666667888999998888877765555544 2223322111 000
Q ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH-----HHhhcHHHHHH---------------H
Q 018258 221 HEEKLVQEQSQMKLYAEQVSQ---LLATEKNLRLQLTADGEKFQQFQD-----ALVKSNEVFET---------------F 277 (359)
Q Consensus 221 ~~e~~~~Ek~q~k~l~eqv~~---l~~tE~eLr~QL~~Y~eKF~EFQd-----TL~KSNevF~t---------------F 277 (359)
..+.+++-+.+-..++....+ +...-.-|..+|+-|..--..|+. .+.+.-.+|.- -
T Consensus 725 ~~q~~e~~~t~~eel~a~~~e~k~l~~~q~~l~~~L~k~~~~~es~k~~~~~a~~~~~~~~~~~~~qeqv~El~~~l~e~ 804 (970)
T KOG0946|consen 725 LLQGAEASKTQNEELNAALSENKKLENDQELLTKELNKKNADIESFKATQRSAELSQGSLNDNLGDQEQVIELLKNLSEE 804 (970)
T ss_pred HHhHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhcccchhhhhhhhHHHHHHHHHhhhhh
Confidence 000000000011111111100 110111122223222111111111 11111112211 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 018258 278 KQEIEKMAKSIKELKKENAFLKSKCEKSDFTLIEL-------VEERERMKKQLEKSKNQKEKLESLCRSLQAERKQN 347 (359)
Q Consensus 278 KkEMEKMsKKiKkLEKEn~~~k~K~E~sn~aLiem-------aeEr~~~~ke~e~~kkq~ekLe~LCRaLQ~ER~~~ 347 (359)
..-.-...+.+.+++-+..++-.+....+..+-.| +.+.....+++..++-++.-+.+++..+...|+.+
T Consensus 805 ~~~l~~~q~e~~~~keq~~t~~~~tsa~a~~le~m~~~~~~la~e~~~ieq~ls~l~~~~k~~~nli~~ltEk~~sl 881 (970)
T KOG0946|consen 805 STRLQELQSELTQLKEQIQTLLERTSAAADSLESMGSTEKNLANELKLIEQKLSNLQEKIKFGNNLIKELTEKISSL 881 (970)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHhhccccchhhHHHHHHHHHHHHHHHhhhhhhHHHHHhhhhhhH
Confidence 11133445566666777777767766666666655 56666667777777777777888888887777654
No 48
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=84.90 E-value=4.6 Score=40.35 Aligned_cols=91 Identities=23% Similarity=0.288 Sum_probs=79.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHHHHHHH
Q 018258 247 KNLRLQLTADGEKFQQFQDALVKSNEVFETFKQEIEKMAKSIKELKKENAFLKSKCEKSDFTLIELVEERERMKKQLEKS 326 (359)
Q Consensus 247 ~eLr~QL~~Y~eKF~EFQdTL~KSNevF~tFKkEMEKMsKKiKkLEKEn~~~k~K~E~sn~aLiemaeEr~~~~ke~e~~ 326 (359)
..+...|..-.+...+.++.|..-++-...++.+.+........|+.+......|.+.+..-+-.+..|+.+|...+..+
T Consensus 224 ~~a~~~l~~~~~~L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~kl~rA~~Li~~L~~E~~RW~~~~~~l 303 (344)
T PF12777_consen 224 EEAEAELEEAEEQLAEKQAELAELEEKLAALQKEYEEAQKEKQELEEEIEETERKLERAEKLISGLSGEKERWSEQIEEL 303 (344)
T ss_dssp HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCHCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHhhhcchhhhHHHHHHHH
Confidence 34445556666777888888888999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHH
Q 018258 327 KNQKEKLESLC 337 (359)
Q Consensus 327 kkq~ekLe~LC 337 (359)
..+...|-+=|
T Consensus 304 ~~~~~~l~GD~ 314 (344)
T PF12777_consen 304 EEQLKNLVGDS 314 (344)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHhcccHHHH
Confidence 99988887644
No 49
>PRK02224 chromosome segregation protein; Provisional
Probab=84.85 E-value=69 Score=35.53 Aligned_cols=46 Identities=9% Similarity=0.289 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018258 257 GEKFQQFQDALVKSNEVFETFKQEIEKMAKSIKELKKENAFLKSKC 302 (359)
Q Consensus 257 ~eKF~EFQdTL~KSNevF~tFKkEMEKMsKKiKkLEKEn~~~k~K~ 302 (359)
.+.|+.+.+.+...+..+..+..+++.+......|..+...+....
T Consensus 645 ~~~~e~l~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~~i~~~~~~~ 690 (880)
T PRK02224 645 EARIEEAREDKERAEEYLEQVEEKLDELREERDDLQAEIGAVENEL 690 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666666666666665555555555555555554444433
No 50
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=84.82 E-value=90 Score=36.83 Aligned_cols=53 Identities=15% Similarity=0.125 Sum_probs=36.4
Q ss_pred HHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHH
Q 018258 260 FQQFQDALVKSNEVFETFKQEIEKMAKSIKELKKENAFLKSKCEKSDFTLIEL 312 (359)
Q Consensus 260 F~EFQdTL~KSNevF~tFKkEMEKMsKKiKkLEKEn~~~k~K~E~sn~aLiem 312 (359)
+.++...|...+........+++..+..|+.|.++...+...-.....+|--+
T Consensus 972 L~~~e~el~~~~~~ie~le~e~~~l~~~i~~l~kel~~~~~~kr~l~dnL~~~ 1024 (1311)
T TIGR00606 972 LKQKETELNTVNAQLEECEKHQEKINEDMRLMRQDIDTQKIQERWLQDNLTLR 1024 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555666666666677777777778888877777777776666666655544
No 51
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=83.02 E-value=75 Score=34.49 Aligned_cols=47 Identities=21% Similarity=0.286 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018258 252 QLTADGEKFQQFQDALVKSNEVFETFKQEIEKMAKSIKELKKENAFL 298 (359)
Q Consensus 252 QL~~Y~eKF~EFQdTL~KSNevF~tFKkEMEKMsKKiKkLEKEn~~~ 298 (359)
.+..|.+++.+.+..+.+.+.-......+++...+.+..++++...+
T Consensus 422 ~i~~l~e~l~~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 468 (650)
T TIGR03185 422 QIAQLLEELGEAQNELFRSEAEIEELLRQLETLKEAIEALRKTLDEK 468 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444555555554444444444444443
No 52
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=82.77 E-value=1.1e+02 Score=36.03 Aligned_cols=98 Identities=18% Similarity=0.261 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHHHHHH
Q 018258 246 EKNLRLQLTADGEKFQQFQDALVKSNEVFETFKQEIEKMAKSIKELKKENAFLKSKCEKSDFTLIELVEERERMKKQLEK 325 (359)
Q Consensus 246 E~eLr~QL~~Y~eKF~EFQdTL~KSNevF~tFKkEMEKMsKKiKkLEKEn~~~k~K~E~sn~aLiemaeEr~~~~ke~e~ 325 (359)
...++.++..+......+.--+ ++.....-...+++..-..+-....+...............-..-.++.....++..
T Consensus 437 ~~~~~~~~~~~~~~l~~l~~~~-~~~~~~~e~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~ 515 (1201)
T PF12128_consen 437 LEELQEQREQLKSELAELKQQL-KNPQYTEEEKEQLEQADKRLEQAQEQQNQAQQAVEELQAEEQELRKERDQAEEELRQ 515 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-hCcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445444444444443322 233333334444444333333333333333333333333333333334444445555
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 018258 326 SKNQKEKLESLCRSLQAER 344 (359)
Q Consensus 326 ~kkq~ekLe~LCRaLQ~ER 344 (359)
++.++..|+.=|..|+...
T Consensus 516 ~~~~~~~~~~~~~~l~~~L 534 (1201)
T PF12128_consen 516 ARRELEELRAQIAELQRQL 534 (1201)
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 6666666666666666554
No 53
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=82.69 E-value=12 Score=34.51 Aligned_cols=86 Identities=23% Similarity=0.326 Sum_probs=53.4
Q ss_pred HHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018258 261 QQFQDALVKSNEVFETFKQEIEKMAKSIKELKKENAFLKSKCEKSDFTLIELVEERERMKKQLEKSKNQKEKLESLCRSL 340 (359)
Q Consensus 261 ~EFQdTL~KSNevF~tFKkEMEKMsKKiKkLEKEn~~~k~K~E~sn~aLiemaeEr~~~~ke~e~~kkq~ekLe~LCRaL 340 (359)
.+++.-|...|.-....+.++......|..|+.+...++.+.......|-+...-...+..++..+.-+...|+.=++.|
T Consensus 91 ~el~~~L~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l 170 (194)
T PF08614_consen 91 GELAQQLVELNDELQELEKELSEKERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKL 170 (194)
T ss_dssp -----------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666777777777777788888888888888888888888888888888887778888888888888888888888888
Q ss_pred HHHhhc
Q 018258 341 QAERKQ 346 (359)
Q Consensus 341 Q~ER~~ 346 (359)
+.|...
T Consensus 171 ~~En~~ 176 (194)
T PF08614_consen 171 EEENRE 176 (194)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 888654
No 54
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=82.66 E-value=54 Score=32.61 Aligned_cols=83 Identities=16% Similarity=0.133 Sum_probs=38.6
Q ss_pred HHhHHHHHHHHHHHhhHHHHHHHHhhHHHHHhhHhHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHh
Q 018258 115 RDKLESLCRELQRQNKMLMDECKRVSSEGQNLRLDLSAKFQDAIKDVSIKLEEQKDDCLSQLKENEMLRTNLKQLADQYA 194 (359)
Q Consensus 115 K~KLE~LCRELQkqNK~lKEE~~~~~~eee~kRkelsekFq~tL~dIq~~meE~~~~~~k~~~EN~~LreKLK~lieQYE 194 (359)
-+=++-.||||.+.+..-+.-......+=-...=.+--.|.++=.|+..-|..+ .+..+. -.+|.+=..=|+
T Consensus 70 Lely~~~c~EL~~~I~egr~~~~~~E~~~~~~nPpLf~EY~~a~~d~r~~m~~q----~~~vK~----~aRl~aK~~WYe 141 (325)
T PF08317_consen 70 LELYQFSCRELKKYISEGRQIFEEIEEETYESNPPLFREYYTADPDMRLLMDNQ----FQLVKT----YARLEAKKMWYE 141 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHcCCHHHHHHHHHH----HHHHHH----HHHHHHHHHHHH
Confidence 344667899999887755544333222211111123333433334444333311 011111 234445556677
Q ss_pred hHHHHHHHHHh
Q 018258 195 LTEQQYAQKLK 205 (359)
Q Consensus 195 lRE~h~~k~lK 205 (359)
=|-+++..+..
T Consensus 142 WR~~ll~gl~~ 152 (325)
T PF08317_consen 142 WRMQLLEGLKE 152 (325)
T ss_pred HHHHHHHHHHH
Confidence 77666655443
No 55
>PHA02562 46 endonuclease subunit; Provisional
Probab=82.60 E-value=65 Score=33.52 Aligned_cols=29 Identities=21% Similarity=0.219 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018258 274 FETFKQEIEKMAKSIKELKKENAFLKSKC 302 (359)
Q Consensus 274 F~tFKkEMEKMsKKiKkLEKEn~~~k~K~ 302 (359)
....+..++........|+.+...|....
T Consensus 346 i~~~~~~i~~~~~~~~~l~~ei~~l~~~~ 374 (562)
T PHA02562 346 ISTNKQSLITLVDKAKKVKAAIEELQAEF 374 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 33333333333333444444444443333
No 56
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=81.38 E-value=63 Score=32.49 Aligned_cols=202 Identities=23% Similarity=0.319 Sum_probs=114.7
Q ss_pred HHHHHHHhHHHHHHHhHHHHHHHHHHHhhHHH---HHHHHhhHHHHHhhHhHHHHHHHHHHHHHHHHHhhhhh-----hh
Q 018258 102 QQVLAERDAAMAVRDKLESLCRELQRQNKMLM---DECKRVSSEGQNLRLDLSAKFQDAIKDVSIKLEEQKDD-----CL 173 (359)
Q Consensus 102 ~qv~~Er~kai~~K~KLE~LCRELQkqNK~lK---EE~~~~~~eee~kRkelsekFq~tL~dIq~~meE~~~~-----~~ 173 (359)
+.+..+-+....-|+.|..=.||+-...+.++ ++......+-.++|.++.++.+....++-...+..+.. +.
T Consensus 30 ~El~~~~~~~~ekRdeln~kvrE~~e~~~elr~~rdeineev~elK~kR~ein~kl~eL~~~~~~l~e~~~~~~~~~~~~ 109 (294)
T COG1340 30 DELRKEASELAEKRDELNAKVRELREKAQELREERDEINEEVQELKEKRDEINAKLQELRKEYRELKEKRNEFNLGGRSI 109 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCH
Confidence 33333333334445555554555444433333 33334455567788888888887666665544433211 00
Q ss_pred hh------------------HHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHhHH--HHHHHHHHHHHHHH
Q 018258 174 SQ------------------LKENEMLRTNLKQLADQYALTEQQYAQKLKQKTLELQIGELKIK--QHEEKLVQEQSQMK 233 (359)
Q Consensus 174 k~------------------~~EN~~LreKLK~lieQYElRE~h~~k~lK~KeLE~QL~~AKle--q~~e~~~~Ek~q~k 233 (359)
.. ..+-..|-.+++.|-.+|+.+......-.+.++|-.++...+-. ...+....-..++.
T Consensus 110 ~~ler~i~~Le~~~~T~~L~~e~E~~lvq~I~~L~k~le~~~k~~e~~~~~~el~aei~~lk~~~~e~~eki~~la~eaq 189 (294)
T COG1340 110 KSLEREIERLEKKQQTSVLTPEEERELVQKIKELRKELEDAKKALEENEKLKELKAEIDELKKKAREIHEKIQELANEAQ 189 (294)
T ss_pred HHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00 22333466677777777777665544434444443333332221 11111112222334
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018258 234 LYAEQVSQLLATEKNLRLQLTADGEKFQQFQDALVKSNEVFETFKQEIEKMAKSIKELKKENAFLKSKCE 303 (359)
Q Consensus 234 ~l~eqv~~l~~tE~eLr~QL~~Y~eKF~EFQdTL~KSNevF~tFKkEMEKMsKKiKkLEKEn~~~k~K~E 303 (359)
.|.+++-.+-..=.++|.-.+.|.++|-++..-..-=++-|.....++....+.|+.|.......+.+..
T Consensus 190 e~he~m~k~~~~~De~Rkeade~he~~ve~~~~~~e~~ee~~~~~~elre~~k~ik~l~~~~~~~~~~~~ 259 (294)
T COG1340 190 EYHEEMIKLFEEADELRKEADELHEEFVELSKKIDELHEEFRNLQNELRELEKKIKALRAKEKAAKRREK 259 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555566666788889999999999888888888888888888888888888877777666655543
No 57
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=81.35 E-value=86 Score=34.06 Aligned_cols=68 Identities=13% Similarity=0.191 Sum_probs=38.8
Q ss_pred HHHHhHHHHHHHhHHHHHHHHHHHhhH--------HHHHHHHhhHHH-HHhhHhHHHHHHHHHHHHHHHHHhhhhhh
Q 018258 105 LAERDAAMAVRDKLESLCRELQRQNKM--------LMDECKRVSSEG-QNLRLDLSAKFQDAIKDVSIKLEEQKDDC 172 (359)
Q Consensus 105 ~~Er~kai~~K~KLE~LCRELQkqNK~--------lKEE~~~~~~ee-e~kRkelsekFq~tL~dIq~~meE~~~~~ 172 (359)
-++++..+++|..++.=|..|-....- |.|+.....++= -..|..--.+++.+|.||-++.+.+...+
T Consensus 189 r~~ld~Etllr~d~~n~~q~Lleel~f~~~~h~~eI~e~~~~~~rd~t~~~r~~F~~eL~~Ai~eiRaqye~~~~~n 265 (546)
T KOG0977|consen 189 RKQLDDETLLRVDLQNRVQTLLEELAFLKRIHKQEIEEERRKARRDTTADNREYFKNELALAIREIRAQYEAISRQN 265 (546)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHhhcccccchHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345555677777777666666444333 333333222222 24566667777888888888877665444
No 58
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=80.97 E-value=67 Score=32.58 Aligned_cols=121 Identities=29% Similarity=0.346 Sum_probs=77.4
Q ss_pred HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHH
Q 018258 223 EKLVQEQSQMKLYAEQV----SQLLATEKNLRLQLTADG-------EKFQQFQDALVKSNEVFETFKQEIEKMAKSIKEL 291 (359)
Q Consensus 223 e~~~~Ek~q~k~l~eqv----~~l~~tE~eLr~QL~~Y~-------eKF~EFQdTL~KSNevF~tFKkEMEKMsKKiKkL 291 (359)
+....|..+.+.+++++ +.+..+..++-.+...|. ..+..+...|..|.+-=.....|++.+..++..+
T Consensus 19 e~cq~ErDqyKlMAEqLqer~q~LKkk~~el~~~~~~~~d~~~~~~~~~~~La~lL~~sre~Nk~L~~Ev~~Lrqkl~E~ 98 (319)
T PF09789_consen 19 EKCQSERDQYKLMAEQLQERYQALKKKYRELIQEAAGFGDPSIPPEKENKNLAQLLSESREQNKKLKEEVEELRQKLNEA 98 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCccCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666665554443 334444444433222221 3556677888888888888888888888888888
Q ss_pred HHHHHHHHHHHHhhhHhHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018258 292 KKENAFLKSKCEKSDFTLIE-----LVEERERMKKQLEKSKNQKEKLESLCRSLQAE 343 (359)
Q Consensus 292 EKEn~~~k~K~E~sn~aLie-----maeEr~~~~ke~e~~kkq~ekLe~LCRaLQ~E 343 (359)
..++..++.+.......-.. ...+|..+-.+++.++.++..|+-=.+++-.|
T Consensus 99 qGD~KlLR~~la~~r~~~~~~~~~~~~~ere~lV~qLEk~~~q~~qLe~d~qs~lDE 155 (319)
T PF09789_consen 99 QGDIKLLREKLARQRVGDEGIGARHFPHEREDLVEQLEKLREQIEQLERDLQSLLDE 155 (319)
T ss_pred hchHHHHHHHHHhhhhhhccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888765443222111 13778888888888888888877766665544
No 59
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=80.94 E-value=49 Score=30.98 Aligned_cols=139 Identities=18% Similarity=0.169 Sum_probs=85.0
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHH
Q 018258 149 DLSAKFQDAIKDVSIKLEEQKDDCLSQLKENEMLRTNLKQLADQYALTEQQYAQKLKQKTLELQIGELKIKQHEEKLVQE 228 (359)
Q Consensus 149 elsekFq~tL~dIq~~meE~~~~~~k~~~EN~~LreKLK~lieQYElRE~h~~k~lK~KeLE~QL~~AKleq~~e~~~~E 228 (359)
+|......+..+|..|....- ..|-.|-.-||.=|..-..++.+..+.|..-..|-
T Consensus 2 ~L~~~He~af~~iK~YYndIT-------~~NL~lIksLKeei~emkk~e~~~~k~m~ei~~eN----------------- 57 (201)
T PF13851_consen 2 ELMKNHEKAFQEIKNYYNDIT-------LNNLELIKSLKEEIAEMKKKEERNEKLMAEISQEN----------------- 57 (201)
T ss_pred hHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------
Confidence 345566667777877776443 34444555555555544444444443333222222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 018258 229 QSQMKLYAEQVSQLLATEKNLRLQLTADGEKFQQFQ---DALVKSNEVFETFKQEIEKMAKSIKELKKENAFLKSKCEKS 305 (359)
Q Consensus 229 k~q~k~l~eqv~~l~~tE~eLr~QL~~Y~eKF~EFQ---dTL~KSNevF~tFKkEMEKMsKKiKkLEKEn~~~k~K~E~s 305 (359)
+.|.+-+..+...-.+|+.+|..|..-...+. ..+.-...-+...+-|-+-+.-+..+|+.|...|..||+.+
T Consensus 58 ----~~L~epL~~a~~e~~eL~k~L~~y~kdK~~L~~~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~kf~~~ 133 (201)
T PF13851_consen 58 ----KRLSEPLKKAEEEVEELRKQLKNYEKDKQSLQNLKARLKELEKELKDLKWEHEVLEQRFEKLEQERDELYRKFESA 133 (201)
T ss_pred ----HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23344445555556677777777776555443 44555566777788888888899999999999999999866
Q ss_pred hHhHHHHHHH
Q 018258 306 DFTLIELVEE 315 (359)
Q Consensus 306 n~aLiemaeE 315 (359)
=..+-..+.-
T Consensus 134 i~evqQk~~~ 143 (201)
T PF13851_consen 134 IQEVQQKTGL 143 (201)
T ss_pred HHHHHHHHHH
Confidence 5555444443
No 60
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=80.52 E-value=1.2e+02 Score=35.36 Aligned_cols=163 Identities=21% Similarity=0.262 Sum_probs=78.0
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHH-------h-HHHHHHHHHHHhHHHHH
Q 018258 151 SAKFQDAIKDVSIKLEEQKDDCLSQLKENEMLRTNLKQLADQYALTEQQYAQKL-------K-QKTLELQIGELKIKQHE 222 (359)
Q Consensus 151 sekFq~tL~dIq~~meE~~~~~~k~~~EN~~LreKLK~lieQYElRE~h~~k~l-------K-~KeLE~QL~~AKleq~~ 222 (359)
.+-....|++|++++.+-.+.-..+-.|-..++.-|..+-.-|..-+..|...- + -..++.++++++-+-.+
T Consensus 311 ~~~~r~k~teiea~i~~~~~e~~~~d~Ei~~~r~~~~~~~re~~~~~~~~~~~~n~i~~~k~~~d~l~k~I~~~~~~~~~ 390 (1074)
T KOG0250|consen 311 IEEARQKLTEIEAKIGELKDEVDAQDEEIEEARKDLDDLRREVNDLKEEIREIENSIRKLKKEVDRLEKQIADLEKQTNN 390 (1074)
T ss_pred HHHHhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445555667777777766666555555666666666655554444333332211 1 11244444443322211
Q ss_pred HHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018258 223 EKLVQE----QSQMKLYAEQVSQLLATEKNLRLQLTADGEKFQQFQDALVKSNEVFETFKQEIEKMAKSIKELKKENAFL 298 (359)
Q Consensus 223 e~~~~E----k~q~k~l~eqv~~l~~tE~eLr~QL~~Y~eKF~EFQdTL~KSNevF~tFKkEMEKMsKKiKkLEKEn~~~ 298 (359)
. ...+ ......|..+|..+......|+..++....+....+.-+..--.--.+.+.-++.++..++.|.+=...-
T Consensus 391 ~-~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~~~~~~~~~~ee~~~i~~~i~~l~k~i~~~~~~l~~lk~~k~dk 469 (1074)
T KOG0250|consen 391 E-LGSELEERENKLEQLKKEVEKLEEQINSLREELNEVKEKAKEEEEEKEHIEGEILQLRKKIENISEELKDLKKTKTDK 469 (1074)
T ss_pred h-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccch
Confidence 1 1111 1122334455555555555555555555555555554444443444445555555555555555555444
Q ss_pred HHHHHhhhHhHHHHHH
Q 018258 299 KSKCEKSDFTLIELVE 314 (359)
Q Consensus 299 k~K~E~sn~aLiemae 314 (359)
-++|-..-.+|+..++
T Consensus 470 vs~FG~~m~~lL~~I~ 485 (1074)
T KOG0250|consen 470 VSAFGPNMPQLLRAIE 485 (1074)
T ss_pred hhhcchhhHHHHHHHH
Confidence 5555544444444333
No 61
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=80.52 E-value=94 Score=33.99 Aligned_cols=81 Identities=23% Similarity=0.263 Sum_probs=62.1
Q ss_pred HHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018258 254 TADGEKFQQFQDALVKSNEVFETFKQEIEKMAKSIKELKKENAFLKSKCEKSDFTLIELVEERERMKKQLEKSKNQKEKL 333 (359)
Q Consensus 254 ~~Y~eKF~EFQdTL~KSNevF~tFKkEMEKMsKKiKkLEKEn~~~k~K~E~sn~aLiemaeEr~~~~ke~e~~kkq~ekL 333 (359)
+.|+.+--++-.-+.| =+.||+|.-.-++.|-||.+.+..|.+.+=....+++-.-.+.+......=+.+-.|
T Consensus 487 s~Yt~RIlEIv~NI~K-------Qk~eI~KIl~DTr~lQkeiN~l~gkL~RtF~v~dElifrdAKkDe~~rkaYK~La~l 559 (594)
T PF05667_consen 487 SAYTRRILEIVKNIRK-------QKEEIEKILSDTRELQKEINSLTGKLDRTFTVTDELIFRDAKKDEAARKAYKLLASL 559 (594)
T ss_pred HHHHHHHHHHHHhHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhcCHHHHHHHHHHHHH
Confidence 4566666665554444 356999999999999999999999999999999888887777666666666667777
Q ss_pred HHHHHHHH
Q 018258 334 ESLCRSLQ 341 (359)
Q Consensus 334 e~LCRaLQ 341 (359)
-..|-.|-
T Consensus 560 h~~c~~Li 567 (594)
T PF05667_consen 560 HENCSQLI 567 (594)
T ss_pred HHHHHHHH
Confidence 77777664
No 62
>PRK01156 chromosome segregation protein; Provisional
Probab=80.35 E-value=1e+02 Score=34.39 Aligned_cols=59 Identities=19% Similarity=0.244 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHH
Q 018258 253 LTADGEKFQQFQDALVKSNEVFETFKQEIEKMAKSIKELKKENAFLKSKCEKSDFTLIE 311 (359)
Q Consensus 253 L~~Y~eKF~EFQdTL~KSNevF~tFKkEMEKMsKKiKkLEKEn~~~k~K~E~sn~aLie 311 (359)
++...++|..+.+.+..-..-+..++.+++.+...+..++.....++.+++.....+.+
T Consensus 669 ~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~l~~~i~~l~~~~~~l~eel~~~~~~~~~ 727 (895)
T PRK01156 669 LKEITSRINDIEDNLKKSRKALDDAKANRARLESTIEILRTRINELSDRINDINETLES 727 (895)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 45566667777777777777777777777777777777776666666665555444443
No 63
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=79.78 E-value=1.3e+02 Score=35.22 Aligned_cols=44 Identities=27% Similarity=0.253 Sum_probs=28.3
Q ss_pred CCchhhhhhcccCCCCccccccccCCCCCcccccccccccccccc
Q 018258 16 KGSVEQRESAVINPNSAAVSEASAGASGCSTEERSEAQGIIKKDV 60 (359)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 60 (359)
-|..+ |-.++|-||.+.-|+---..|-|-.+.++.-...+++|-
T Consensus 21 iGPF~-~FTaIIGPNGSGKSNlMDAISFVLGekss~LR~~~lkdL 64 (1141)
T KOG0018|consen 21 IGPFD-RFTAIIGPNGSGKSNLMDAISFVLGEKSSHLRVSHLKDL 64 (1141)
T ss_pred ecCch-hceeeeCCCCCchHHHHHHHHHHhcCCCcccccchHHHH
Confidence 45555 788999999887776555555555555555555555543
No 64
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=79.55 E-value=99 Score=33.63 Aligned_cols=55 Identities=18% Similarity=0.310 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHhhcHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHhhhHhH
Q 018258 255 ADGEKFQQFQDALVKSNEVFETFKQEIEKM-------AKSIKELKKENAFLKSKCEKSDFTL 309 (359)
Q Consensus 255 ~Y~eKF~EFQdTL~KSNevF~tFKkEMEKM-------sKKiKkLEKEn~~~k~K~E~sn~aL 309 (359)
.|..|..+.+..-..-|....-.+.|+..| ..++-.||.-|..+-.+.+..+-.|
T Consensus 272 ~Y~~kI~~i~~~~~~~~~~~~~~rEEl~~~R~~i~~Lr~klselE~~n~~L~~~I~dL~~ql 333 (546)
T KOG0977|consen 272 WYKRKIQEIRTSAERANVEQNYAREELRRIRSRISGLRAKLSELESRNSALEKRIEDLEYQL 333 (546)
T ss_pred HHHHHHHHHHhhhccccchhHHHHHHHHHHHhcccchhhhhccccccChhHHHHHHHHHhhh
Confidence 477777777766666666666667766665 4566666777766666665555443
No 65
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=78.85 E-value=0.64 Score=52.08 Aligned_cols=63 Identities=27% Similarity=0.283 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 018258 284 MAKSIKELKKENAFLKSKCEKSDFTLIELVEERERM-------KKQLEKSKNQKEKLESLCRSLQAERKQ 346 (359)
Q Consensus 284 MsKKiKkLEKEn~~~k~K~E~sn~aLiemaeEr~~~-------~ke~e~~kkq~ekLe~LCRaLQ~ER~~ 346 (359)
+.|+.+++++....|+.+++.....+.....+...+ ...++.+.-+++.|+.--+.|+.+-..
T Consensus 375 LeKKqr~fDk~l~e~k~~~~~~~~e~d~~q~e~r~~~te~~~Lk~~lee~~e~~e~lere~k~L~~El~d 444 (859)
T PF01576_consen 375 LEKKQRKFDKQLAEWKAKVEELQAERDAAQREARELETELFKLKNELEELQEQLEELERENKQLQDELED 444 (859)
T ss_dssp ----------------------------------------------------------------------
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhcc
Confidence 347888899999999999877666665544443333 334444445555555555666666544
No 66
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=78.66 E-value=1.4e+02 Score=34.97 Aligned_cols=60 Identities=15% Similarity=0.231 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHH--HHHHHHHHHhHH
Q 018258 152 AKFQDAIKDVSIKLEEQKDDCLSQLKENEMLRTNLKQLADQYALTEQQYAQKLKQK--TLELQIGELKIK 219 (359)
Q Consensus 152 ekFq~tL~dIq~~meE~~~~~~k~~~EN~~LreKLK~lieQYElRE~h~~k~lK~K--eLE~QL~~AKle 219 (359)
..+..++++++..|++..+.-. ..+..++-.=|..|+-++. ...+-.+ +++-|++.+.++
T Consensus 735 ~~~e~~~~~L~~~~n~ved~if------~~f~~~igv~ir~Yee~~~--~~~~a~k~~ef~~q~~~l~~~ 796 (1141)
T KOG0018|consen 735 QNREGEMKELEERMNKVEDRIF------KGFCRRIGVRIREYEEREL--QQEFAKKRLEFENQKAKLENQ 796 (1141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH------HHhhhhcCeeeehHHHHHH--HHHHHHHHHHHHHHHHHHhhh
Confidence 4455555555555553322111 1133333333788988777 3334444 444555544443
No 67
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=78.40 E-value=84 Score=32.20 Aligned_cols=108 Identities=16% Similarity=0.266 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018258 181 MLRTNLKQLADQYALTEQQYAQKLKQKTLELQIGELKIKQHEEKLVQEQSQMKLYAEQVSQLLATEKNLRLQLTADGEKF 260 (359)
Q Consensus 181 ~LreKLK~lieQYElRE~h~~k~lK~KeLE~QL~~AKleq~~e~~~~Ek~q~k~l~eqv~~l~~tE~eLr~QL~~Y~eKF 260 (359)
.|..-+..-++.-+.||.|++.+|.+---++.-..++|...++...+-..-+..+...+..+...-...+.++..=+...
T Consensus 245 kl~~~i~~~lekI~sREk~iN~qle~l~~eYr~~~~~ls~~~~~y~~~s~~V~~~t~~L~~IseeLe~vK~emeerg~~m 324 (359)
T PF10498_consen 245 KLQQDISKTLEKIESREKYINNQLEPLIQEYRSAQDELSEVQEKYKQASEGVSERTRELAEISEELEQVKQEMEERGSSM 324 (359)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 37778888889999999999999988887777666667666554422222222222222222222222222222111111
Q ss_pred HHHHHHHhhcHHHHHHHHHHHHHHHHHHH
Q 018258 261 QQFQDALVKSNEVFETFKQEIEKMAKSIK 289 (359)
Q Consensus 261 ~EFQdTL~KSNevF~tFKkEMEKMsKKiK 289 (359)
.+ ...|.+-.......|.||-.|.=+|-
T Consensus 325 tD-~sPlv~IKqAl~kLk~EI~qMdvrIG 352 (359)
T PF10498_consen 325 TD-GSPLVKIKQALTKLKQEIKQMDVRIG 352 (359)
T ss_pred CC-CCHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 11 02233444566667777777665553
No 68
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=77.97 E-value=1.5e+02 Score=34.76 Aligned_cols=51 Identities=29% Similarity=0.380 Sum_probs=28.7
Q ss_pred hHhhhhhhhh--hhhhHHHHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHhhHHHHH
Q 018258 78 ETRRKSSKRT--FKSEKEFLEFTLKYQQVLAERDAAMAVRDKLESLCRELQRQNKMLMDE 135 (359)
Q Consensus 78 ~~~r~~~k~~--~~ler~~~~~~~~~~qv~~Er~kai~~K~KLE~LCRELQkqNK~lKEE 135 (359)
+.=++-.+|. --++.+.+++.++.+.+..|||- .+.|++. |+.+|-++.-.
T Consensus 285 eQLq~lrarse~~tleseiiqlkqkl~dm~~erdt---dr~ktee----L~eEnstLq~q 337 (1195)
T KOG4643|consen 285 EQLQKLRARSEGATLESEIIQLKQKLDDMRSERDT---DRHKTEE----LHEENSTLQVQ 337 (1195)
T ss_pred HHHHHHHhccccCChHHHHHHHHHHHHHHHHhhhh---HHHHHHH----HHHHHHHHHHH
Confidence 3334444444 45667777777777777777763 3445543 34444444433
No 69
>KOG4083 consensus Head-elevated expression protein [Transcription]
Probab=77.20 E-value=20 Score=33.80 Aligned_cols=71 Identities=17% Similarity=0.269 Sum_probs=60.0
Q ss_pred HHHHHHHhHHHHHHHhHHHHHHHHHHHhhHHHHHHHHhhHHHHHhhHhHHHHHHHHHHHHHHHHHhhhhhh
Q 018258 102 QQVLAERDAAMAVRDKLESLCRELQRQNKMLMDECKRVSSEGQNLRLDLSAKFQDAIKDVSIKLEEQKDDC 172 (359)
Q Consensus 102 ~qv~~Er~kai~~K~KLE~LCRELQkqNK~lKEE~~~~~~eee~kRkelsekFq~tL~dIq~~meE~~~~~ 172 (359)
.-...|+.+++.+.+-|+++-++|+|+---+|+...++....-+--+..++.|+.+..+|.++.--.+..+
T Consensus 76 ~~~~~e~~k~~~LAr~le~~~q~L~k~daf~Ke~larlEen~~e~ykv~~eqy~~aaE~VekrFk~~~~~p 146 (192)
T KOG4083|consen 76 QSSAEEGEKAARLARDLEEKSQELKKQDAFYKEQLARLEENSSEFYKVTTEQYQKAAERVEKRFKAYHREP 146 (192)
T ss_pred hhHhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhhhhhcCC
Confidence 44567899999999999999999999999999998887766666777889999999999999887555444
No 70
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=76.76 E-value=0.79 Score=51.33 Aligned_cols=100 Identities=22% Similarity=0.276 Sum_probs=0.0
Q ss_pred HHHHhHHHHHHHHHHHhhHHHHHHH----HhhHHHHHhhHhHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHH
Q 018258 113 AVRDKLESLCRELQRQNKMLMDECK----RVSSEGQNLRLDLSAKFQDAIKDVSIKLEEQKDDCLSQLKENEMLRTNLKQ 188 (359)
Q Consensus 113 ~~K~KLE~LCRELQkqNK~lKEE~~----~~~~eee~kRkelsekFq~tL~dIq~~meE~~~~~~k~~~EN~~LreKLK~ 188 (359)
-.|.+||+---.|+..+..+..... .+...+.. .-.+...|.+++.++++.......+.....-|...+..
T Consensus 145 k~k~~lEK~k~~l~~e~~dL~~~l~~~~k~k~~~Ek~-----~K~lE~qL~El~~klee~er~~~el~~~k~kL~~E~~e 219 (859)
T PF01576_consen 145 KQKAKLEKEKSQLEAELDDLQAQLDSLQKAKQEAEKK-----RKQLEAQLNELQAKLEESERQRNELTEQKAKLQSENSE 219 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhH-----HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666555555555444443332 22222222 24566777788888876655555555566667777778
Q ss_pred HHHHHhhHHHHHHHHHhHH-HHHHHHHHHh
Q 018258 189 LADQYALTEQQYAQKLKQK-TLELQIGELK 217 (359)
Q Consensus 189 lieQYElRE~h~~k~lK~K-eLE~QL~~AK 217 (359)
|..+++.-+..+..+-+.+ .|+.||.+++
T Consensus 220 L~~qLee~e~~~~~l~r~k~~L~~qLeelk 249 (859)
T PF01576_consen 220 LTRQLEEAESQLSQLQREKSSLESQLEELK 249 (859)
T ss_dssp ------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 8888887777777776644 5777877775
No 71
>PRK04863 mukB cell division protein MukB; Provisional
Probab=75.52 E-value=2e+02 Score=34.99 Aligned_cols=42 Identities=21% Similarity=0.279 Sum_probs=22.8
Q ss_pred HHHHHHHHhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018258 296 AFLKSKCEKSDFTLIELVEERERMKKQLEKSKNQKEKLESLC 337 (359)
Q Consensus 296 ~~~k~K~E~sn~aLiemaeEr~~~~ke~e~~kkq~ekLe~LC 337 (359)
..+....|..+...-...+.|..+..+.+.+..++..|.++.
T Consensus 561 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~~qL~~~i~~l~~~a 602 (1486)
T PRK04863 561 EELEARLESLSESVSEARERRMALRQQLEQLQARIQRLAARA 602 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 333444444555555555556666666666666666555554
No 72
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=75.40 E-value=0.91 Score=49.55 Aligned_cols=188 Identities=21% Similarity=0.267 Sum_probs=0.0
Q ss_pred HHHHhHHHHHHHHHHHhhHHHHHHHH----hhHHHHH-----hhHhHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHH
Q 018258 113 AVRDKLESLCRELQRQNKMLMDECKR----VSSEGQN-----LRLDLSAKFQDAIKDVSIKLEEQKDDCLSQLKENEMLR 183 (359)
Q Consensus 113 ~~K~KLE~LCRELQkqNK~lKEE~~~----~~~eee~-----kRkelsekFq~tL~dIq~~meE~~~~~~k~~~EN~~Lr 183 (359)
..|.||+.+ -.|.++++.+.+.|.. ...-|++ .++.-.+.|..-|.++...+.+.......+..++..|.
T Consensus 319 ~YKkKLed~-~~lk~qvk~Lee~N~~l~e~~~~LEeel~~~~~~~~qle~~k~qi~eLe~~l~~~~~~~~~l~~e~~~L~ 397 (713)
T PF05622_consen 319 KYKKKLEDL-EDLKRQVKELEEDNAVLLETKAMLEEELKKARALKSQLEEYKKQIQELEQKLSEESRRADKLEFENKQLE 397 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346666665 2344455555554431 1111221 12233345556677777777766665666667888888
Q ss_pred HHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHH---hHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018258 184 TNLKQLADQYALTEQQYAQKLKQKTLELQIGEL---KIKQHEE-------KLVQEQSQMKLYAEQVSQLLATEKNLRLQL 253 (359)
Q Consensus 184 eKLK~lieQYElRE~h~~k~lK~KeLE~QL~~A---Kleq~~e-------~~~~Ek~q~k~l~eqv~~l~~tE~eLr~QL 253 (359)
+++..+....+.-....+. ++...=+..+..+ .+...-. ....|-. -..+.+.+..|...-+.|+..+
T Consensus 398 ek~~~l~~eke~l~~e~~~-L~e~~eeL~~~~~~~~~l~~~~~~~~~~~~~l~~El~-~~~l~erl~rLe~ENk~Lk~~~ 475 (713)
T PF05622_consen 398 EKLEALEEEKERLQEERDS-LRETNEELECSQAQQEQLSQSGEESSSSGDNLSAELN-PAELRERLLRLEHENKRLKEKQ 475 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHhhhccccccccccccccccccccchhhhcc-chHHHHHHHHHHHHHHHHHHHh
Confidence 8888877665532222211 1111001111111 0000000 0000000 0112334444444455565544
Q ss_pred HH-HHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018258 254 TA-DGEKFQQFQDALVKSNEVFETFKQEIEKMAKSIKELKKENAFLKSKCE 303 (359)
Q Consensus 254 ~~-Y~eKF~EFQdTL~KSNevF~tFKkEMEKMsKKiKkLEKEn~~~k~K~E 303 (359)
.. ..+++..++.-|..+|.....+..+......++..|+.+...+.....
T Consensus 476 e~~~~e~~~~L~~~Leda~~~~~~Le~~~~~~~~~~~~lq~qle~lq~~l~ 526 (713)
T PF05622_consen 476 EESEEEKLEELQSQLEDANRRKEKLEEENREANEKILELQSQLEELQKSLQ 526 (713)
T ss_dssp ---------------------------------------------------
T ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33 366777788888888888888877777777777777776666655443
No 73
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=74.94 E-value=81 Score=31.50 Aligned_cols=58 Identities=31% Similarity=0.481 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018258 279 QEIEKMAKSIKELKKENAFLKSKCEKSDFTLIELVEERERMKKQLEKSKNQKEKLESL 336 (359)
Q Consensus 279 kEMEKMsKKiKkLEKEn~~~k~K~E~sn~aLiemaeEr~~~~ke~e~~kkq~ekLe~L 336 (359)
+|+..+......|..+-...-.-+-.-...+..+.+++..+..++.....++++|.+.
T Consensus 78 ~el~~le~e~~~l~~eE~~~~~~~n~~~~~l~~~~~e~~sl~~q~~~~~~~L~~L~kt 135 (314)
T PF04111_consen 78 QELEELEEELEELDEEEEEYWREYNELQLELIEFQEERDSLKNQYEYASNQLDRLRKT 135 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHT-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3444444444444433333333445556667778888888888888888888887653
No 74
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=74.51 E-value=48 Score=30.45 Aligned_cols=65 Identities=14% Similarity=0.234 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018258 238 QVSQLLATEKNLRLQLTADGEKFQQFQDALVKSNEVFETFKQEIEKMAKSIKELKKENAFLKSKC 302 (359)
Q Consensus 238 qv~~l~~tE~eLr~QL~~Y~eKF~EFQdTL~KSNevF~tFKkEMEKMsKKiKkLEKEn~~~k~K~ 302 (359)
.+..+...=..|+..+..+.+-..+...++.--++=+.+..-+..-+..++.+|++||..|-.||
T Consensus 117 ~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~~Lv~Rw 181 (194)
T PF08614_consen 117 RLAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLEEENRELVERW 181 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555566666666667777777777777777777777888888999999999999999998
No 75
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=74.33 E-value=1.5e+02 Score=33.14 Aligned_cols=52 Identities=19% Similarity=0.302 Sum_probs=32.8
Q ss_pred HHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHH
Q 018258 265 DALVKSNEVFETFKQEIEKMAKSIKELKKENAFLKSKCEKSDFTLIELVEERERMK 320 (359)
Q Consensus 265 dTL~KSNevF~tFKkEMEKMsKKiKkLEKEn~~~k~K~E~sn~aLiemaeEr~~~~ 320 (359)
.++.-++++-.-++.|.+..--+...+++ ++.++....-.-+++.++-+.|+
T Consensus 268 ~~~re~~~tv~~LqeE~e~Lqskl~~~~~----l~~~~~~LELeN~~l~tkL~rwE 319 (716)
T KOG4593|consen 268 ATLRENRETVGLLQEELEGLQSKLGRLEK----LQSTLLGLELENEDLLTKLQRWE 319 (716)
T ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHHHH----HHHHHhhHHHHHHHHHHHHHHHH
Confidence 34446667777788888888888877764 56666555444444444444443
No 76
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=74.24 E-value=1 Score=49.19 Aligned_cols=68 Identities=21% Similarity=0.237 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHH
Q 018258 239 VSQLLATEKNLRLQLTADGEKFQQFQDALVKSNEVFETFKQEIEKMAKSIKELKKENAFLKSKCEKSDFTLI 310 (359)
Q Consensus 239 v~~l~~tE~eLr~QL~~Y~eKF~EFQdTL~KSNevF~tFKkEMEKMsKKiKkLEKEn~~~k~K~E~sn~aLi 310 (359)
+..+..+=..|+.+...|.+.-..+.+-|.+++. ++..|+...+.|-.|+.+......+.+.....+.
T Consensus 327 ~~~lk~qvk~Lee~N~~l~e~~~~LEeel~~~~~----~~~qle~~k~qi~eLe~~l~~~~~~~~~l~~e~~ 394 (713)
T PF05622_consen 327 LEDLKRQVKELEEDNAVLLETKAMLEEELKKARA----LKSQLEEYKKQIQELEQKLSEESRRADKLEFENK 394 (713)
T ss_dssp ------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666778888889999998888888888764 6777777666666666666666655554433333
No 77
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=74.18 E-value=2e+02 Score=34.35 Aligned_cols=27 Identities=26% Similarity=0.309 Sum_probs=15.4
Q ss_pred HHHHHhHHHHHHHHHHHhhHHHHHHHH
Q 018258 112 MAVRDKLESLCRELQRQNKMLMDECKR 138 (359)
Q Consensus 112 i~~K~KLE~LCRELQkqNK~lKEE~~~ 138 (359)
...+.+|+.+-|.++++-+-++..+..
T Consensus 507 ~~~~~~l~~~~~~~~eele~~q~~~~~ 533 (1317)
T KOG0612|consen 507 EAKKRKLEALVRQLEEELEDAQKKNDN 533 (1317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566666666666665555544443
No 78
>TIGR03513 GldL_gliding gliding motility-associated protein GldL. This protein family, GldL, is named for the member from Flavobacterium johnsoniae, which is required for a type of rapid gliding motility found in certain members of the Bacteriodetes. However, members are found also in several members of the Bacteriodetes that appear not to be motile
Probab=73.85 E-value=85 Score=29.97 Aligned_cols=93 Identities=14% Similarity=0.197 Sum_probs=76.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHH---HHHHHHHHHHHHH
Q 018258 248 NLRLQLTADGEKFQQFQDALVKSNEVFETFKQEIEKMAKSIKELKKENAFLKSKCEKSDFTLIE---LVEERERMKKQLE 324 (359)
Q Consensus 248 eLr~QL~~Y~eKF~EFQdTL~KSNevF~tFKkEMEKMsKKiKkLEKEn~~~k~K~E~sn~aLie---maeEr~~~~ke~e 324 (359)
+|=.-|..|.+.|+..-.+|.+-++.+.+-.+=-+.|..-.+.|+.=|.....-.+.+++.+-. +++.-..+..++.
T Consensus 103 ~l~esl~~~i~~~~~aa~~i~~~~~~~~~~~~Y~eqm~~aa~~l~~LN~~Ye~QL~~as~q~~~~~~i~~na~~fkeQ~~ 182 (202)
T TIGR03513 103 TLMQSLGNGINNFEGAAKTLAPMTDSYAQQKKYIEQMSSLAANMEGLNTIYEAQLKGASSHADANNEIAINSSSLKEEME 182 (202)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445566788889999999999999999988888888888888999999998888877775544 4677888899999
Q ss_pred HHHHHHHHHHHHHHHH
Q 018258 325 KSKNQKEKLESLCRSL 340 (359)
Q Consensus 325 ~~kkq~ekLe~LCRaL 340 (359)
.+.+.+..|.++.--|
T Consensus 183 kLa~NL~sLN~VYg~M 198 (202)
T TIGR03513 183 KMAANLTSLNEVYGGM 198 (202)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999998876543
No 79
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=73.17 E-value=22 Score=27.32 Aligned_cols=28 Identities=32% Similarity=0.482 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018258 277 FKQEIEKMAKSIKELKKENAFLKSKCEK 304 (359)
Q Consensus 277 FKkEMEKMsKKiKkLEKEn~~~k~K~E~ 304 (359)
|-.|++++.|.+.+++++...+..|..+
T Consensus 2 ~~~E~~rL~Kel~kl~~~i~~~~~kL~n 29 (66)
T PF10458_consen 2 VEAEIERLEKELEKLEKEIERLEKKLSN 29 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 5689999999999999999999998644
No 80
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=72.82 E-value=72 Score=28.69 Aligned_cols=12 Identities=25% Similarity=0.362 Sum_probs=4.3
Q ss_pred HhhcHHHHHHHH
Q 018258 267 LVKSNEVFETFK 278 (359)
Q Consensus 267 L~KSNevF~tFK 278 (359)
+....+.|....
T Consensus 111 l~~~~~~~~~~~ 122 (191)
T PF04156_consen 111 LEKLKEDLQELR 122 (191)
T ss_pred HHHHHHHHHHhH
Confidence 333333333333
No 81
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=72.74 E-value=3.9 Score=44.74 Aligned_cols=103 Identities=23% Similarity=0.341 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018258 234 LYAEQVSQLLATEKNLRLQLTADGEKFQQFQDALVKS-------------NEVFETFKQEIEKMAKSIKELKKENAFLKS 300 (359)
Q Consensus 234 ~l~eqv~~l~~tE~eLr~QL~~Y~eKF~EFQdTL~KS-------------NevF~tFKkEMEKMsKKiKkLEKEn~~~k~ 300 (359)
.+..+..-+.+.-.-||.||..|..- ..+...+ ...+..++.+|+. .+..|+.+....+.
T Consensus 403 RLerq~~L~~kE~d~LR~~L~syd~e----~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ele~---~l~~l~~~l~~~k~ 475 (722)
T PF05557_consen 403 RLERQKALATKERDYLRAQLKSYDKE----ETTMNPSEQDTQRIKEIEDLEQLVDEYKAELEA---QLEELEEELSEQKQ 475 (722)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhh----hccccCchhHHHHHhhHHHHHHHHHHHHHHHHH---HHHHHHHHHHhhhc
Confidence 34445555666777899999998542 2222333 3345555555554 45555555554444
Q ss_pred HHHhhh--------------HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018258 301 KCEKSD--------------FTLIELVEERERMKKQLEKSKNQKEKLESLCRSLQAE 343 (359)
Q Consensus 301 K~E~sn--------------~aLiemaeEr~~~~ke~e~~kkq~ekLe~LCRaLQ~E 343 (359)
...... ..+....++...+..++..+...+.+|+.-...|..+
T Consensus 476 ~~~~~~~e~~~~~~~~~~~~~~~~~~~e~~~~L~~~~~~Le~e~~~L~~~~~~Le~~ 532 (722)
T PF05557_consen 476 RNETLEAELKSLKEQLSSNDRSLSSLSEELNELQKEIEELERENERLRQELEELESE 532 (722)
T ss_dssp ------------------HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccchhhhhhhhhhhhhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 332222 2122222333334445555555555555544444444
No 82
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=72.00 E-value=1.8e+02 Score=32.96 Aligned_cols=18 Identities=33% Similarity=0.599 Sum_probs=9.3
Q ss_pred HHHHHhHHHHHHHHHHHh
Q 018258 112 MAVRDKLESLCRELQRQN 129 (359)
Q Consensus 112 i~~K~KLE~LCRELQkqN 129 (359)
..||.|++.+--+|.+-.
T Consensus 283 ~~mK~k~d~~~~eL~rk~ 300 (775)
T PF10174_consen 283 LAMKSKMDRLKLELSRKK 300 (775)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 445555555555554443
No 83
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=71.63 E-value=1.8e+02 Score=32.90 Aligned_cols=98 Identities=24% Similarity=0.308 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHhhhHhHHH---------
Q 018258 248 NLRLQLTADGEKFQQFQDALVKSNEVFETFKQEIEKM-------AKSIKELKKENAFLKSKCEKSDFTLIE--------- 311 (359)
Q Consensus 248 eLr~QL~~Y~eKF~EFQdTL~KSNevF~tFKkEMEKM-------sKKiKkLEKEn~~~k~K~E~sn~aLie--------- 311 (359)
.++.++.-|..++..+|.-|+--.--+..++.+..++ ...|++|+-+....+-+|++....+..
T Consensus 469 ~~~~e~~~lk~~~~~LQ~eLsEk~~~l~~~kee~s~l~s~~~K~~s~i~~l~I~lEk~rek~~kl~~ql~k~~~~~e~~~ 548 (775)
T PF10174_consen 469 TYQKELKELKAKLESLQKELSEKELQLEDAKEEASKLASSQEKKDSEIERLEIELEKKREKHEKLEKQLEKLRANAELRD 548 (775)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHhhccchhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHhCHhhcc
Confidence 4445555555555555555444443344444333333 234555555554444444444444422
Q ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 018258 312 ----LVEERERMKKQLEKSKNQKEKLESLCRSLQAERK 345 (359)
Q Consensus 312 ----maeEr~~~~ke~e~~kkq~ekLe~LCRaLQ~ER~ 345 (359)
+-.+.+.........+..+++|-.+.+.+-.++.
T Consensus 549 r~~~Le~ev~~~~ee~~kaq~EVERLl~~L~~~E~EK~ 586 (775)
T PF10174_consen 549 RIQQLEQEVTRYREESEKAQAEVERLLDILREAENEKN 586 (775)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1222333334445555666666666665555543
No 84
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=71.59 E-value=1.9e+02 Score=33.13 Aligned_cols=33 Identities=21% Similarity=0.235 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHhHHHHHHHHH
Q 018258 285 AKSIKELKKENAFLKSKCEKSDFTLIELVEERE 317 (359)
Q Consensus 285 sKKiKkLEKEn~~~k~K~E~sn~aLiemaeEr~ 317 (359)
++..+.+|++...+..|+---|..+.+..+++.
T Consensus 847 a~e~~~ieq~ls~l~~~~k~~~nli~~ltEk~~ 879 (970)
T KOG0946|consen 847 ANELKLIEQKLSNLQEKIKFGNNLIKELTEKIS 879 (970)
T ss_pred hhHHHHHHHHHHHHHHHhhhhhhHHHHHhhhhh
Confidence 455566666666666665555555544444433
No 85
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=70.11 E-value=57 Score=28.51 Aligned_cols=64 Identities=27% Similarity=0.300 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
Q 018258 279 QEIEKMAKSIKELKKENAFLKSKCEKSDFTLIELVEERERMKKQLEKS---KNQKEKLESLCRSLQA 342 (359)
Q Consensus 279 kEMEKMsKKiKkLEKEn~~~k~K~E~sn~aLiemaeEr~~~~ke~e~~---kkq~ekLe~LCRaLQ~ 342 (359)
.-+++|+..|+.+|-|...++.........-..+.+|-..+-.+.+.+ ...+..|+.-+..|+.
T Consensus 16 ~~ve~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~~~~~~~~~L~~el~~l~~ 82 (120)
T PF12325_consen 16 QLVERLQSQLRRLEGELASLQEELARLEAERDELREEIVKLMEENEELRALKKEVEELEQELEELQQ 82 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 458889999999999999998887777666666666655555554433 3344455555555554
No 86
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=69.73 E-value=1.6e+02 Score=31.41 Aligned_cols=85 Identities=24% Similarity=0.318 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHH---HHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHH
Q 018258 238 QVSQLLATEKNLRLQLTADGE-KFQQ---FQDALVKSNEVFETFKQEIEKMAKSIKELKKENAFLKSKCEKSDFTLIELV 313 (359)
Q Consensus 238 qv~~l~~tE~eLr~QL~~Y~e-KF~E---FQdTL~KSNevF~tFKkEMEKMsKKiKkLEKEn~~~k~K~E~sn~aLiema 313 (359)
.+......-..|+.+|..|.. +-.. -..........+.+.+.|++.+...+.+...|...++...+.....|-..-
T Consensus 243 kL~~a~~~l~~Lq~El~~~~~~~l~~~~~~~~~~~~~~~~l~s~~~ELe~ak~~L~~~k~E~~~L~~~vesL~~ELe~~K 322 (522)
T PF05701_consen 243 KLAEASAELESLQAELEAAKESKLEEEAEAKEKSSELQSSLASAKKELEEAKKELEKAKEEASSLRASVESLRSELEKEK 322 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444555667777777776 3332 122333334457778888888888888888887777777776666665544
Q ss_pred HHHHHHHHH
Q 018258 314 EERERMKKQ 322 (359)
Q Consensus 314 eEr~~~~ke 322 (359)
.+-..+.+.
T Consensus 323 ~el~~lke~ 331 (522)
T PF05701_consen 323 EELERLKER 331 (522)
T ss_pred HHHHHHHHH
Confidence 444443333
No 87
>PRK10884 SH3 domain-containing protein; Provisional
Probab=69.69 E-value=99 Score=29.29 Aligned_cols=14 Identities=21% Similarity=0.370 Sum_probs=5.7
Q ss_pred HHHHHHHHhhcHHH
Q 018258 260 FQQFQDALVKSNEV 273 (359)
Q Consensus 260 F~EFQdTL~KSNev 273 (359)
-.+.++.+..|+..
T Consensus 120 ~~~l~~~~~~~~~~ 133 (206)
T PRK10884 120 TAEMQQKVAQSDSV 133 (206)
T ss_pred HHHHHHHHHHHHHH
Confidence 33344444444433
No 88
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=69.45 E-value=56 Score=26.08 Aligned_cols=61 Identities=26% Similarity=0.388 Sum_probs=33.9
Q ss_pred HHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHHHHHHH
Q 018258 259 KFQQFQDALVKSNEVFETFKQEIEKMAKSIKELKKENAFLKSKCEKSDFTLIELVEERERMKKQLEKS 326 (359)
Q Consensus 259 KF~EFQdTL~KSNevF~tFKkEMEKMsKKiKkLEKEn~~~k~K~E~sn~aLiemaeEr~~~~ke~e~~ 326 (359)
=|++++.-+...=++++..+.|++....+...|..++..++...+. +..++..|...+..+
T Consensus 5 ~l~~LE~ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~-------L~~e~~~~~~rl~~L 65 (72)
T PF06005_consen 5 LLEQLEEKIQQAVETIALLQMENEELKEKNNELKEENEELKEENEQ-------LKQERNAWQERLRSL 65 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHH
Confidence 4566666666666666777777666666655555555554443322 224555555444443
No 89
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=69.33 E-value=78 Score=34.55 Aligned_cols=65 Identities=26% Similarity=0.294 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018258 280 EIEKMAKSIKELKKENAFLKSKCEKSDFTLIELVEERERMKKQLEKSKNQKEKLESLCRSLQAER 344 (359)
Q Consensus 280 EMEKMsKKiKkLEKEn~~~k~K~E~sn~aLiemaeEr~~~~ke~e~~kkq~ekLe~LCRaLQ~ER 344 (359)
|.++-..++..|++....++.=.-+....+..|-.....+.+.++.++..++.-+.=|-.||.++
T Consensus 253 e~ek~~~~~eslre~~~~L~~D~nK~~~y~~~~~~k~~~~~~~l~~l~~Eie~kEeE~e~lq~~~ 317 (581)
T KOG0995|consen 253 EREKDPGKEESLREKKARLQDDVNKFQAYVSQMKSKKQHMEKKLEMLKSEIEEKEEEIEKLQKEN 317 (581)
T ss_pred HHhcCcchHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555555554444444444444444444455554444444444444444444443
No 90
>KOG3478 consensus Prefoldin subunit 6, KE2 family [Posttranslational modification, protein turnover, chaperones]
Probab=68.75 E-value=82 Score=27.68 Aligned_cols=46 Identities=33% Similarity=0.421 Sum_probs=37.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHhhHHHHHHHH
Q 018258 89 KSEKEFLEFTLKYQQVLAERDAAMAVRDKLESLCRELQRQNKMLMDECKR 138 (359)
Q Consensus 89 ~ler~~~~~~~~~~qv~~Er~kai~~K~KLE~LCRELQkqNK~lKEE~~~ 138 (359)
.+++++.....+|+++|+++.+.+..|.|||.= || +|+.+.+|.-.
T Consensus 2 ~~~~kmee~~~kyq~LQk~l~k~~~~rqkle~q---L~-Enk~V~~Eldl 47 (120)
T KOG3478|consen 2 ALQKKMEEEANKYQNLQKELEKYVESRQKLETQ---LQ-ENKIVLEELDL 47 (120)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---Hh-hhHHHHHHHHH
Confidence 367888899999999999999999999999974 32 48888877643
No 91
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=68.57 E-value=1e+02 Score=30.59 Aligned_cols=62 Identities=27% Similarity=0.335 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018258 273 VFETFKQEIEKMAKSIKELKKENAFLKSKCEKSDFTLIELVEERERMKKQLEKSKNQKEKLE 334 (359)
Q Consensus 273 vF~tFKkEMEKMsKKiKkLEKEn~~~k~K~E~sn~aLiemaeEr~~~~ke~e~~kkq~ekLe 334 (359)
.-..-+.||+.+-..+++.|++...++.|...+..-|..+-.+++++.+-+.-++-+.+++.
T Consensus 201 ~l~~~~~ELe~~~EeL~~~Eke~~e~~~~i~e~~~rl~~l~~~~~~l~k~~~~~~sKV~kf~ 262 (269)
T PF05278_consen 201 KLELKKEELEELEEELKQKEKEVKEIKERITEMKGRLGELEMESTRLSKTIKSIKSKVEKFH 262 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34455689999999999999999999999999999999999999999998888877777664
No 92
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=68.11 E-value=60 Score=25.91 Aligned_cols=63 Identities=27% Similarity=0.312 Sum_probs=49.6
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 018258 270 SNEVFETFKQEIEKMAKSIKELKKENAFLKSKCEKSDFTLIELVEERERMKKQLEKSKNQKEK 332 (359)
Q Consensus 270 SNevF~tFKkEMEKMsKKiKkLEKEn~~~k~K~E~sn~aLiemaeEr~~~~ke~e~~kkq~ek 332 (359)
|+++|...-.=+....-.|.-|.-|+..++.+..........+..+...+..+...+...+..
T Consensus 2 ~~E~l~~LE~ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~~rl~~ 64 (72)
T PF06005_consen 2 SLELLEQLEEKIQQAVETIALLQMENEELKEKNNELKEENEELKEENEQLKQERNAWQERLRS 64 (72)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678888888888888888999999999999888888877777888888887777666555433
No 93
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=66.57 E-value=1.2e+02 Score=28.85 Aligned_cols=96 Identities=18% Similarity=0.311 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----hhHhHHH
Q 018258 236 AEQVSQLLATEKNLRLQLTADGEKFQQFQDALVKSNEVFETFKQEIEKMAKSIKELKKENAFLKSKCEK----SDFTLIE 311 (359)
Q Consensus 236 ~eqv~~l~~tE~eLr~QL~~Y~eKF~EFQdTL~KSNevF~tFKkEMEKMsKKiKkLEKEn~~~k~K~E~----sn~aLie 311 (359)
..-+..+..-|..|+..+..|.+++..-+ .-|..+|.-.+ .++..--.+....++++.. .++.|=.
T Consensus 103 K~vi~~~k~NEE~Lkk~~~ey~~~l~~~e-------qry~aLK~hAe---ekL~~ANeei~~v~~~~~~e~~aLqa~lkk 172 (207)
T PF05010_consen 103 KEVIEGYKKNEETLKKCIEEYEERLKKEE-------QRYQALKAHAE---EKLEKANEEIAQVRSKHQAELLALQASLKK 172 (207)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHH---HHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 34456677777778877777777766533 34444443222 1111111222222222222 1222222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018258 312 LVEERERMKKQLEKSKNQKEKLESLCRSLQ 341 (359)
Q Consensus 312 maeEr~~~~ke~e~~kkq~ekLe~LCRaLQ 341 (359)
.--...-+...++...+.++-|-.||--|=
T Consensus 173 ~e~~~~SLe~~LeQK~kEn~ELtkICDeLI 202 (207)
T PF05010_consen 173 EEMKVQSLEESLEQKTKENEELTKICDELI 202 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 233345566677777888888889997763
No 94
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=66.26 E-value=2.5e+02 Score=32.42 Aligned_cols=71 Identities=20% Similarity=0.227 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHH
Q 018258 242 LLATEKNLRLQLTADGEKFQQFQDALVKSNEVFETFKQE----IEKMAKSIKELKKENAFLKSKCEKSDFTLIEL 312 (359)
Q Consensus 242 l~~tE~eLr~QL~~Y~eKF~EFQdTL~KSNevF~tFKkE----MEKMsKKiKkLEKEn~~~k~K~E~sn~aLiem 312 (359)
+.+.+.+|+..=...++-..+|...+.--++..++.++- |-+-...++-|+-+|..+++-......+|++-
T Consensus 268 ieE~m~qlk~kns~L~~ElSqkeelVk~~qeeLd~lkqt~t~a~gdseqatkylh~enmkltrqkadirc~LlEa 342 (1265)
T KOG0976|consen 268 IEEKMRQLKAKNSVLGDELSQKEELVKELQEELDTLKQTRTRADGDSEQATKYLHLENMKLTRQKADIRCALLEA 342 (1265)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566666666667777777777777777777777763 33334556667777777776666666666554
No 95
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=66.13 E-value=63 Score=25.95 Aligned_cols=60 Identities=25% Similarity=0.287 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH--------hhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018258 283 KMAKSIKELKKENAFLKSKCE--------KSDFTLIELVEERERMKKQLEKSKNQKEKLESLCRSLQA 342 (359)
Q Consensus 283 KMsKKiKkLEKEn~~~k~K~E--------~sn~aLiemaeEr~~~~ke~e~~kkq~ekLe~LCRaLQ~ 342 (359)
.....|.+|.|||-.||-|.= .++...-++..+...++-++..+++.+..+..+.+.++.
T Consensus 4 Eqe~~i~~L~KENF~LKLrI~fLee~l~~~~~~~~~~~~keNieLKve~~~L~~el~~~~~~l~~a~~ 71 (75)
T PF07989_consen 4 EQEEQIDKLKKENFNLKLRIYFLEERLQKLGPESIEELLKENIELKVEVESLKRELQEKKKLLKEAEK 71 (75)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456778999999999988752 344455567778888888888888888887777766553
No 96
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=65.92 E-value=50 Score=27.07 Aligned_cols=41 Identities=27% Similarity=0.373 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHH
Q 018258 152 AKFQDAIKDVSIKLEEQKDDCLSQLKENEMLRTNLKQLADQ 192 (359)
Q Consensus 152 ekFq~tL~dIq~~meE~~~~~~k~~~EN~~LreKLK~lieQ 192 (359)
--+|.+|.++...++....++.++..||..|..=+..|+..
T Consensus 26 ~~LQ~sL~~L~~Rve~Vk~E~~kL~~EN~~Lq~YI~nLm~~ 66 (80)
T PF10224_consen 26 LELQDSLEALSDRVEEVKEENEKLESENEYLQQYIGNLMSS 66 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34889999999999999999999999999999888777654
No 97
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=65.78 E-value=98 Score=27.51 Aligned_cols=52 Identities=17% Similarity=0.284 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018258 253 LTADGEKFQQFQDALVKSNEVFETFKQEIEKMAKSIKELKKENAFLKSKCEK 304 (359)
Q Consensus 253 L~~Y~eKF~EFQdTL~KSNevF~tFKkEMEKMsKKiKkLEKEn~~~k~K~E~ 304 (359)
|..--+-+++....|.-+++-+..--.-.+.+..+++.||-+...|-.||+.
T Consensus 82 iq~LEeele~ae~~L~e~~ekl~e~d~~ae~~eRkv~~le~~~~~~E~k~ee 133 (143)
T PF12718_consen 82 IQLLEEELEEAEKKLKETTEKLREADVKAEHFERKVKALEQERDQWEEKYEE 133 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHHHH
Confidence 3333333333333333333333333344444444444444444444444443
No 98
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=65.39 E-value=2.8e+02 Score=32.64 Aligned_cols=68 Identities=16% Similarity=0.140 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhH
Q 018258 242 LLATEKNLRLQLTADGEKFQQFQDALVKSNEVFETFKQEIEKMAKSIKELKKENAFLKSKCEKSDFTL 309 (359)
Q Consensus 242 l~~tE~eLr~QL~~Y~eKF~EFQdTL~KSNevF~tFKkEMEKMsKKiKkLEKEn~~~k~K~E~sn~aL 309 (359)
+......|..++.....++.++..-+..-..-|..-+.+++..-+.....-.+.....++....-..+
T Consensus 814 ~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~~~~~l~~l~~~~~~l 881 (1201)
T PF12128_consen 814 LREEKPELEEQLRDLEQELQELEQELNQLQKEVKQRRKELEEELKALEEQLEQLEEQLRRLRDLLEKL 881 (1201)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 33456677777777777777777777777777777777776666666665555555555444333333
No 99
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=65.20 E-value=82 Score=26.40 Aligned_cols=65 Identities=15% Similarity=0.307 Sum_probs=31.3
Q ss_pred HHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018258 199 QYAQKLKQKTLELQIGELKIKQHEEKLVQEQSQMKLYAEQVSQLLATEKNLRLQLTADGEKFQQFQ 264 (359)
Q Consensus 199 h~~k~lK~KeLE~QL~~AKleq~~e~~~~Ek~q~k~l~eqv~~l~~tE~eLr~QL~~Y~eKF~EFQ 264 (359)
.|++.++.-+....=+.-+.+........-...+..+..++..+...-..+...|..| .+|.+|=
T Consensus 50 ~f~~flken~~k~~rA~k~a~~e~k~~~~k~~ei~~l~~~l~~l~~~~~k~e~~l~~~-~~Y~~fL 114 (126)
T PF13863_consen 50 KFDKFLKENEAKRERAEKRAEEEKKKKEEKEAEIKKLKAELEELKSEISKLEEKLEEY-KKYEEFL 114 (126)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence 3555555544433222222222222222222234455666776766666777777776 3444443
No 100
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=62.09 E-value=1.6e+02 Score=28.72 Aligned_cols=96 Identities=21% Similarity=0.331 Sum_probs=66.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHHHHH
Q 018258 247 KNLRLQLTADGEKFQQFQDALVKSNEVFETFKQEIEKM--AKSIKELKKENAFLKSKCEKSDFTLIELVEERERMKKQLE 324 (359)
Q Consensus 247 ~eLr~QL~~Y~eKF~EFQdTL~KSNevF~tFKkEMEKM--sKKiKkLEKEn~~~k~K~E~sn~aLiemaeEr~~~~ke~e 324 (359)
..++.-+..|-.....++..|.+-++=-..-..-|... .+....|..|...|+.+....+-.|..+..+...+.+++.
T Consensus 48 ~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl~~v~~~~e~~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~ 127 (239)
T COG1579 48 EALEIELEDLENQVSQLESEIQEIRERIKRAEEKLSAVKDERELRALNIEIQIAKERINSLEDELAELMEEIEKLEKEIE 127 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444555555566666665555555554444222 3456678888888999988899999999998888888888
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 018258 325 KSKNQKEKLESLCRSLQA 342 (359)
Q Consensus 325 ~~kkq~ekLe~LCRaLQ~ 342 (359)
.++.++..++.-.....+
T Consensus 128 ~l~~~~~~~e~~~~e~~~ 145 (239)
T COG1579 128 DLKERLERLEKNLAEAEA 145 (239)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 888888887777666554
No 101
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=61.71 E-value=1.1e+02 Score=26.55 Aligned_cols=30 Identities=23% Similarity=0.556 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018258 275 ETFKQEIEKMAKSIKELKKENAFLKSKCEK 304 (359)
Q Consensus 275 ~tFKkEMEKMsKKiKkLEKEn~~~k~K~E~ 304 (359)
..|.+|+..+..++..|...|..|-...|.
T Consensus 101 ~~le~e~~~~~~r~~dL~~QN~lLh~QlE~ 130 (132)
T PF07926_consen 101 EQLEKELSELEQRIEDLNEQNKLLHDQLES 130 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 345677777777888887777777666554
No 102
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=61.70 E-value=26 Score=25.63 Aligned_cols=41 Identities=20% Similarity=0.353 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHHHHHHHHHH
Q 018258 289 KELKKENAFLKSKCEKSDFTLIELVEERERMKKQLEKSKNQ 329 (359)
Q Consensus 289 KkLEKEn~~~k~K~E~sn~aLiemaeEr~~~~ke~e~~kkq 329 (359)
|.||++-..|++-|+.....-..+..|+..+..++..++.+
T Consensus 1 KQlE~Dy~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L~~k 41 (45)
T PF02183_consen 1 KQLERDYDALKASYDSLKAEYDSLKKENEKLRAEVQELKEK 41 (45)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46899999999999887666666666666555555554443
No 103
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=59.57 E-value=1.6e+02 Score=27.88 Aligned_cols=93 Identities=18% Similarity=0.323 Sum_probs=60.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHHH
Q 018258 237 EQVSQLLATEKNLRLQLTADGEKFQQFQDALVKSNEVFETFKQEIEKMAKSIKELKKENAFLKSKCEKSDFTLIELVEER 316 (359)
Q Consensus 237 eqv~~l~~tE~eLr~QL~~Y~eKF~EFQdTL~KSNevF~tFKkEMEKMsKKiKkLEKEn~~~k~K~E~sn~aLiemaeEr 316 (359)
+++..+-..-..|...|..-+.....++-...+.+.-+..|...|..+..+++..|.-....-+++......|..+-.+-
T Consensus 134 eR~e~~E~ki~eLE~el~~~~~~lk~lE~~~~~~~~re~~~e~~i~~L~~~lkeaE~Rae~aE~~v~~Le~~id~le~eL 213 (237)
T PF00261_consen 134 ERAEAAESKIKELEEELKSVGNNLKSLEASEEKASEREDEYEEKIRDLEEKLKEAENRAEFAERRVKKLEKEIDRLEDEL 213 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhchhHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555566777777777788888888888888888888888877777777777666666666666655555544444
Q ss_pred HHHHHHHHHHHHH
Q 018258 317 ERMKKQLEKSKNQ 329 (359)
Q Consensus 317 ~~~~ke~e~~kkq 329 (359)
..++..+..+...
T Consensus 214 ~~~k~~~~~~~~e 226 (237)
T PF00261_consen 214 EKEKEKYKKVQEE 226 (237)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4444444433333
No 104
>PRK02119 hypothetical protein; Provisional
Probab=59.40 E-value=89 Score=24.88 Aligned_cols=53 Identities=23% Similarity=0.260 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 018258 280 EIEKMAKSIKELKKENAFLKSKCEKSDFTLIELVEERERMKKQLEKSKNQKEKLESLCRSLQAERKQ 346 (359)
Q Consensus 280 EMEKMsKKiKkLEKEn~~~k~K~E~sn~aLiemaeEr~~~~ke~e~~kkq~ekLe~LCRaLQ~ER~~ 346 (359)
||..|..+|-.||--....-.-.+..|..+.. ..++|+.|...++.|...-..
T Consensus 3 ~~~~~e~Ri~~LE~rla~QE~tie~LN~~v~~--------------Qq~~id~L~~ql~~L~~rl~~ 55 (73)
T PRK02119 3 IQQNLENRIAELEMKIAFQENLLEELNQALIE--------------QQFVIDKMQVQLRYMANKLKD 55 (73)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHh
Confidence 67778888888888777777666777766664 455666666666666554333
No 105
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=58.28 E-value=1e+02 Score=29.71 Aligned_cols=50 Identities=26% Similarity=0.376 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHHHH
Q 018258 274 FETFKQEIEKMAKSIKELKKENAFLKSKCEKSDFTLIELVEERERMKKQL 323 (359)
Q Consensus 274 F~tFKkEMEKMsKKiKkLEKEn~~~k~K~E~sn~aLiemaeEr~~~~ke~ 323 (359)
-.+.+.|.++-.++.++.+++...++...|+.+.....+.+|...+..++
T Consensus 160 ~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~~i 209 (216)
T KOG1962|consen 160 LEKLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQEQI 209 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHH
Confidence 34555566666666666666666666666666666665555555444444
No 106
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=57.75 E-value=1.8e+02 Score=27.74 Aligned_cols=141 Identities=20% Similarity=0.133 Sum_probs=73.6
Q ss_pred HHHHHHhhHHHHHHHHhhHHHHHhhHhHHHHHHHHHHHHHHHHHh--hhhhhhhh-HHHHHHHHHHHHHHHHHHhhHHHH
Q 018258 123 RELQRQNKMLMDECKRVSSEGQNLRLDLSAKFQDAIKDVSIKLEE--QKDDCLSQ-LKENEMLRTNLKQLADQYALTEQQ 199 (359)
Q Consensus 123 RELQkqNK~lKEE~~~~~~eee~kRkelsekFq~tL~dIq~~meE--~~~~~~k~-~~EN~~LreKLK~lieQYElRE~h 199 (359)
-+|+-.|+.+.+|+.+..+.=+ .=.+.+.++..-|.++-.+|.. +.-...+. -+|.+.|+.=++++-++|-.
T Consensus 11 ~dL~~~n~~L~~en~kL~~~ve-~~ee~na~L~~e~~~L~~q~~s~Qqal~~aK~l~eEledLk~~~~~lEE~~~~---- 85 (193)
T PF14662_consen 11 EDLQLNNQKLADENAKLQRSVE-TAEEGNAQLAEEITDLRKQLKSLQQALQKAKALEEELEDLKTLAKSLEEENRS---- 85 (193)
T ss_pred HHHHHHhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----
Confidence 3567777777777765433211 1123345555555555444431 11112222 24566677777777666653
Q ss_pred HHHHHhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018258 200 YAQKLKQKTLELQIGELKIKQHEEKLVQEQSQMKLYAEQVSQLLATEKNLRLQLTADGEKFQQFQDALV 268 (359)
Q Consensus 200 ~~k~lK~KeLE~QL~~AKleq~~e~~~~Ek~q~k~l~eqv~~l~~tE~eLr~QL~~Y~eKF~EFQdTL~ 268 (359)
+....++-+=|.|...|+++-.++....-......++.+..+|...=..|+.||-.|..=+-+-...++
T Consensus 86 L~aq~rqlEkE~q~L~~~i~~Lqeen~kl~~e~~~lk~~~~eL~~~~~~Lq~Ql~~~e~l~~~~da~l~ 154 (193)
T PF14662_consen 86 LLAQARQLEKEQQSLVAEIETLQEENGKLLAERDGLKKRSKELATEKATLQRQLCEFESLICQRDAILS 154 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555666666666666654443322222222334455555555566788888777555554444333
No 107
>cd07429 Cby_like Chibby, a nuclear inhibitor of Wnt/beta-catenin mediated transcription, and similar proteins. Chibby(Cby) is a well-conserved nuclear protein that functions as part of the Wnt/beta-catenin signaling pathway. Specifically, Cby binds directly to beta-catenin by interacting with its central region, which harbors armadillo repeats. Cby-beta-catenin interactions may also involve 14-3-3 proteins. By competing with other binding partners of beta-catenin, the Tcf/Lef transcription factors, Cby inhibits transcriptional activation. Cby has been shown to play a role in adipocyte differentiation. The C-terminal region of Cby appears to contain an alpha-helical coiled-coil motif.
Probab=57.39 E-value=28 Score=30.14 Aligned_cols=35 Identities=31% Similarity=0.552 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHHHH
Q 018258 279 QEIEKMAKSIKELKKENAFLKSKCEKSDFTLIELVEERE 317 (359)
Q Consensus 279 kEMEKMsKKiKkLEKEn~~~k~K~E~sn~aLiemaeEr~ 317 (359)
.|+-++.|+++.||.||..++=|.| .|++|..|.+
T Consensus 72 ~e~~rlkkk~~~LeEENNlLklKie----vLLDMLtett 106 (108)
T cd07429 72 REVLRLKKKNQQLEEENNLLKLKIE----VLLDMLAETT 106 (108)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHh
Confidence 6899999999999999999999976 5788877654
No 108
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=56.23 E-value=3.3e+02 Score=30.51 Aligned_cols=13 Identities=15% Similarity=0.243 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHHh
Q 018258 182 LRTNLKQLADQYA 194 (359)
Q Consensus 182 LreKLK~lieQYE 194 (359)
|++|++.+.+.++
T Consensus 598 LaeR~e~a~d~Qe 610 (717)
T PF10168_consen 598 LAERYEEAKDKQE 610 (717)
T ss_pred HHHHHHHHHHHHH
Confidence 4444444444433
No 109
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=56.15 E-value=2e+02 Score=27.82 Aligned_cols=76 Identities=17% Similarity=0.253 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018258 254 TADGEKFQQFQDALVKSNEVFETFKQEIEKMAKSIKELKKENAFLKSKCEKSDFTLIELVEERERMKKQLEKSKNQKEKL 333 (359)
Q Consensus 254 ~~Y~eKF~EFQdTL~KSNevF~tFKkEMEKMsKKiKkLEKEn~~~k~K~E~sn~aLiemaeEr~~~~ke~e~~kkq~ekL 333 (359)
..|+..-..+...+.+++. +..|++++.-...+|+.|......+.+..+.-...|...-..+..+++.+...-.+|
T Consensus 130 ~~~~~~~~~lk~~~~~~~~----~~~~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~L 205 (216)
T KOG1962|consen 130 EKAMKENEALKKQLENSSK----LEEENDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKL 205 (216)
T ss_pred HHHHHHHHHHHHhhhcccc----hhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 4455566677777777665 788899999999999998888888877766665555444444445555444443333
No 110
>PF14645 Chibby: Chibby family
Probab=53.09 E-value=44 Score=28.94 Aligned_cols=37 Identities=30% Similarity=0.448 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHHHH
Q 018258 277 FKQEIEKMAKSIKELKKENAFLKSKCEKSDFTLIELVEERE 317 (359)
Q Consensus 277 FKkEMEKMsKKiKkLEKEn~~~k~K~E~sn~aLiemaeEr~ 317 (359)
.-.++..+.++++.|+.||..++-|++ -|++|..|.+
T Consensus 69 ~~~~~~~l~~~n~~L~EENN~Lklk~e----lLlDMLtett 105 (116)
T PF14645_consen 69 DGEENQRLRKENQQLEEENNLLKLKIE----LLLDMLTETT 105 (116)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHH
Confidence 446788899999999999999999976 4677766654
No 111
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=53.01 E-value=1.9e+02 Score=26.70 Aligned_cols=89 Identities=16% Similarity=0.262 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHH-----HHHHHHHHHHH
Q 018258 252 QLTADGEKFQQFQDALVKSNEVFETFKQEIEKMAKSIKELKKENAFLKSKCEKSDFTLIELVEE-----RERMKKQLEKS 326 (359)
Q Consensus 252 QL~~Y~eKF~EFQdTL~KSNevF~tFKkEMEKMsKKiKkLEKEn~~~k~K~E~sn~aLiemaeE-----r~~~~ke~e~~ 326 (359)
....|.+....++..+.........++..+.+|..++..+.-....|..+..... +-..+..- -.....-|+.+
T Consensus 92 ~k~~~e~~~~~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~~~l~ar~~~a~-a~~~~~~~~~~~~~~~a~~~~er~ 170 (221)
T PF04012_consen 92 RKADLEEQAERLEQQLDQAEAQVEKLKEQLEELEAKLEELKSKREELKARENAAK-AQKKVNEALASFSVSSAMDSFERM 170 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhccCCccchHHHHHHH
Confidence 3445666667777777777778888888888898999988888888888764322 22222111 12223345556
Q ss_pred HHHHHHHHHHHHHHH
Q 018258 327 KNQKEKLESLCRSLQ 341 (359)
Q Consensus 327 kkq~ekLe~LCRaLQ 341 (359)
..++..++.-..+..
T Consensus 171 e~ki~~~ea~a~a~~ 185 (221)
T PF04012_consen 171 EEKIEEMEARAEASA 185 (221)
T ss_pred HHHHHHHHHHHHHHH
Confidence 666666665555443
No 112
>PLN02939 transferase, transferring glycosyl groups
Probab=52.70 E-value=4.4e+02 Score=30.85 Aligned_cols=28 Identities=29% Similarity=0.442 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 018258 242 LLATEKNLRLQLTADGEKFQQFQDALVK 269 (359)
Q Consensus 242 l~~tE~eLr~QL~~Y~eKF~EFQdTL~K 269 (359)
+...-.++..|+.+|.+-.++||++|.+
T Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (977)
T PLN02939 367 LQASDHEIHSYIQLYQESIKEFQDTLSK 394 (977)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455678899999999999999999987
No 113
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=52.48 E-value=2.3e+02 Score=27.62 Aligned_cols=64 Identities=20% Similarity=0.385 Sum_probs=33.1
Q ss_pred hhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018258 268 VKSNEVFETFKQEIEKMAKSIKELKKENAFLKSKCEKSDFTLIELVEERERMKKQLEKSKNQKEKLE 334 (359)
Q Consensus 268 ~KSNevF~tFKkEMEKMsKKiKkLEKEn~~~k~K~E~sn~aLiemaeEr~~~~ke~e~~kkq~ekLe 334 (359)
...++=-.+...||...-..+..|+++...++.++...-..+.+ .+......+.....+...+.
T Consensus 99 ~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~~~~~e~~~~e---~~~~~e~e~~~i~e~~~~~~ 162 (239)
T COG1579 99 QIAKERINSLEDELAELMEEIEKLEKEIEDLKERLERLEKNLAE---AEARLEEEVAEIREEGQELS 162 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence 33333344455566666666666666666666666665555433 33334444444444433333
No 114
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=51.23 E-value=1.8e+02 Score=25.94 Aligned_cols=55 Identities=27% Similarity=0.364 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018258 283 KMAKSIKELKKENAFLKSKCEKSDFTLI-ELVEERERMKKQLEKSKNQKEKLESLC 337 (359)
Q Consensus 283 KMsKKiKkLEKEn~~~k~K~E~sn~aLi-emaeEr~~~~ke~e~~kkq~ekLe~LC 337 (359)
.|...|..|+.++..+..|.+....+-. -..+++....+.+..+.+..-+=..+|
T Consensus 113 el~~~i~~l~~e~~~l~~kL~~l~~~~~~vs~ee~~~~~~~~~~~~k~w~kRKri~ 168 (169)
T PF07106_consen 113 ELREEIEELEEEIEELEEKLEKLRSGSKPVSPEEKEKLEKEYKKWRKEWKKRKRIC 168 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444444445555544444433222111 124555555555555544433333333
No 115
>KOG3650 consensus Predicted coiled-coil protein [General function prediction only]
Probab=51.19 E-value=60 Score=28.06 Aligned_cols=39 Identities=23% Similarity=0.437 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHH
Q 018258 152 AKFQDAIKDVSIKLEEQKDDCLSQLKENEMLRTNLKQLA 190 (359)
Q Consensus 152 ekFq~tL~dIq~~meE~~~~~~k~~~EN~~LreKLK~li 190 (359)
=.+|.+|.|++...+....++.++..||..|..=+..|+
T Consensus 66 LELQnTLdDLSqRVdsVKEEnLKLrSENQVLGQYIeNLM 104 (120)
T KOG3650|consen 66 LELQNTLDDLSQRVDSVKEENLKLRSENQVLGQYIENLM 104 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHH
Confidence 357899999999999999999999999998876555554
No 116
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=51.06 E-value=1.2e+02 Score=27.13 Aligned_cols=39 Identities=26% Similarity=0.318 Sum_probs=20.6
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHh
Q 018258 270 SNEVFETFKQEIEKMAKSIKELKKENAFLKSKCEKSDFT 308 (359)
Q Consensus 270 SNevF~tFKkEMEKMsKKiKkLEKEn~~~k~K~E~sn~a 308 (359)
|++-...+..++..+...+..|..+...+...+-..+..
T Consensus 70 s~eel~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~ 108 (169)
T PF07106_consen 70 SPEELAELDAEIKELREELAELKKEVKSLEAELASLSSE 108 (169)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 344455555555555555555555555555555444433
No 117
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=51.05 E-value=2.8e+02 Score=28.04 Aligned_cols=121 Identities=21% Similarity=0.239 Sum_probs=56.2
Q ss_pred hHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHhHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018258 175 QLKENEMLRTNLKQLADQYALTEQQYAQKLKQKTLELQIGELKIKQH---EEKLVQEQSQMKLYAEQVSQLLATEKNLRL 251 (359)
Q Consensus 175 ~~~EN~~LreKLK~lieQYElRE~h~~k~lK~KeLE~QL~~AKleq~---~e~~~~Ek~q~k~l~eqv~~l~~tE~eLr~ 251 (359)
+..||..|.+ ..+-++..-+.+.+-+..|+..+.+.+..|... .+.+.+|-.+++ ..+.-....-...-.
T Consensus 65 LkREnq~l~e----~c~~lek~rqKlshdlq~Ke~qv~~lEgQl~s~Kkqie~Leqelkr~K---sELErsQ~~~~~~~~ 137 (307)
T PF10481_consen 65 LKRENQSLME----SCENLEKTRQKLSHDLQVKESQVNFLEGQLNSCKKQIEKLEQELKRCK---SELERSQQAASSGDV 137 (307)
T ss_pred hhhhhhhHHH----HHHHHHHHHHHhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHhhccCCc
Confidence 3445554443 344455555566666667765554444444433 333444443333 222111111111112
Q ss_pred HHHHHHHHHHHHHHHHhhc----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018258 252 QLTADGEKFQQFQDALVKS----NEVFETFKQEIEKMAKSIKELKKENAFLKSKC 302 (359)
Q Consensus 252 QL~~Y~eKF~EFQdTL~KS----NevF~tFKkEMEKMsKKiKkLEKEn~~~k~K~ 302 (359)
-|+.|..=..-|..-++-| -..|+.++..+-+-..--|+||-|...|..|.
T Consensus 138 sl~~~stpqk~f~~p~tp~q~~~~sk~e~L~ekynkeveerkrle~e~k~lq~k~ 192 (307)
T PF10481_consen 138 SLNPCSTPQKSFATPLTPSQYYSDSKYEELQEKYNKEVEERKRLEAEVKALQAKK 192 (307)
T ss_pred cccccCCchhhccCCCChhhhhhhhhHHHHHHHHHHHHHHHhhHHHHHHHHhccc
Confidence 2444554444555444333 13344444444444445677888888877653
No 118
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain. Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.
Probab=50.25 E-value=2.3e+02 Score=26.96 Aligned_cols=54 Identities=19% Similarity=0.240 Sum_probs=25.3
Q ss_pred HHHHHHhhHHHHHhhHhHHHHHHHHHHHHHHHHHhh-------hhhhhhhHHHHHHHHHHH
Q 018258 133 MDECKRVSSEGQNLRLDLSAKFQDAIKDVSIKLEEQ-------KDDCLSQLKENEMLRTNL 186 (359)
Q Consensus 133 KEE~~~~~~eee~kRkelsekFq~tL~dIq~~meE~-------~~~~~k~~~EN~~LreKL 186 (359)
|||..++.+..+..+..+.-.--..+.||..++..+ .+.|.++..+|.+|++=.
T Consensus 18 keel~~rLR~~E~ek~~~m~~~g~lm~evNrrlQ~hl~EIR~LKe~NqkLqedNqELRdLC 78 (195)
T PF10226_consen 18 KEELVRRLRRAEAEKMSLMVEHGRLMKEVNRRLQQHLNEIRGLKEVNQKLQEDNQELRDLC 78 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444433332222222233444444444433 344556677888887533
No 119
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=49.42 E-value=4.3e+02 Score=29.82 Aligned_cols=44 Identities=18% Similarity=0.238 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHH
Q 018258 245 TEKNLRLQLTADGEKFQQFQDALVKSNEVFETFKQEIEKMAKSI 288 (359)
Q Consensus 245 tE~eLr~QL~~Y~eKF~EFQdTL~KSNevF~tFKkEMEKMsKKi 288 (359)
.-..|...|..-..--.+++..|+-+-+-..+|-.||..+...+
T Consensus 420 ri~~LE~ELr~l~~~A~E~q~~LnsAQDELvtfSEeLAqLYHHV 463 (717)
T PF09730_consen 420 RISELEKELRALSKLAGESQGSLNSAQDELVTFSEELAQLYHHV 463 (717)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566666666678899999999999999999998886543
No 120
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=49.39 E-value=3.6e+02 Score=28.93 Aligned_cols=79 Identities=19% Similarity=0.359 Sum_probs=59.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHHHHHH
Q 018258 247 KNLRLQLTADGEKFQQFQDALVKSNEVFETFKQEIEKMAKSIKELKKENAFLKSKCEKSDFTLIELVEERERMKKQLEK 325 (359)
Q Consensus 247 ~eLr~QL~~Y~eKF~EFQdTL~KSNevF~tFKkEMEKMsKKiKkLEKEn~~~k~K~E~sn~aLiemaeEr~~~~ke~e~ 325 (359)
..+..+|..-...|......++.....|..+..+++.+.+++..++++-..+..........-.+.-..-..+...+..
T Consensus 351 ~~lekeL~~Le~~~~~~~~~i~~~~~~ysel~e~leel~e~leeie~eq~ei~e~l~~Lrk~E~eAr~kL~~~~~~L~~ 429 (569)
T PRK04778 351 RQLEKQLESLEKQYDEITERIAEQEIAYSELQEELEEILKQLEEIEKEQEKLSEMLQGLRKDELEAREKLERYRNKLHE 429 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777888888888889999999999999999999999999999998888777766655555544443334444333
No 121
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=49.28 E-value=2.7e+02 Score=27.44 Aligned_cols=111 Identities=17% Similarity=0.202 Sum_probs=63.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhH
Q 018258 233 KLYAEQVSQLLATEKNLRLQLTADGEKFQQFQDALVK---SNEVFETFKQEIEKMAKSIKELKKENAFLKSKCEKSDFTL 309 (359)
Q Consensus 233 k~l~eqv~~l~~tE~eLr~QL~~Y~eKF~EFQdTL~K---SNevF~tFKkEMEKMsKKiKkLEKEn~~~k~K~E~sn~aL 309 (359)
..+..++..+...-..++.++..+...|.-.+..+.+ |..-|...+.+.......+..++.+...++...+.....+
T Consensus 154 ~~~~~~i~~~~~~l~~~~~~l~~~~~~~~~~~~L~~~g~is~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~~ 233 (423)
T TIGR01843 154 KQLEAELAGLQAQLQALRQQLEVISEELEARRKLKEKGLVSRLELLELERERAEAQGELGRLEAELEVLKRQIDELQLER 233 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555555566667777777777766665555 5555556666666666667667766666666666655555
Q ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018258 310 IELVEE-RERMKKQLEKSKNQKEKLESLCRSLQAE 343 (359)
Q Consensus 310 iemaeE-r~~~~ke~e~~kkq~ekLe~LCRaLQ~E 343 (359)
...... +.....++..+..++..++.-...++..
T Consensus 234 ~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~ 268 (423)
T TIGR01843 234 QQIEQTFREEVLEELTEAQARLAELRERLNKARDR 268 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 443222 2333334445555555555555554443
No 122
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=49.01 E-value=4.1e+02 Score=29.37 Aligned_cols=42 Identities=36% Similarity=0.371 Sum_probs=25.5
Q ss_pred HhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018258 303 EKSDFTLIELVEERERMKKQLEKSKNQKEKLESLCRSLQAER 344 (359)
Q Consensus 303 E~sn~aLiemaeEr~~~~ke~e~~kkq~ekLe~LCRaLQ~ER 344 (359)
+-.|.++-..-+|+..+..+++..+.....|-.+...++.+.
T Consensus 349 ~f~~~a~~~~eeEr~~L~~qL~eqk~~~q~L~h~va~~q~e~ 390 (617)
T PF15070_consen 349 EFFNSALAQAEEERARLRRQLEEQKVQCQHLAHQVASAQKEP 390 (617)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhhccccccccc
Confidence 334455555566777777777666666566666666666554
No 123
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=48.35 E-value=3.9e+02 Score=29.02 Aligned_cols=77 Identities=17% Similarity=0.257 Sum_probs=62.5
Q ss_pred HHHHHHH--HHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHHHH
Q 018258 247 KNLRLQL--TADGEKFQQFQDALVKSNEVFETFKQEIEKMAKSIKELKKENAFLKSKCEKSDFTLIELVEERERMKKQL 323 (359)
Q Consensus 247 ~eLr~QL--~~Y~eKF~EFQdTL~KSNevF~tFKkEMEKMsKKiKkLEKEn~~~k~K~E~sn~aLiemaeEr~~~~ke~ 323 (359)
..-|.++ +.|..++.++..-+..+..-=..|..|.+.+.++....|++...+..-....+.++--+-+|-+....-+
T Consensus 407 ~esRE~LIk~~Y~~RI~eLt~qlQ~adSKa~~f~~Ec~aL~~rL~~aE~ek~~l~eeL~~a~~~i~~LqDEL~TTr~NY 485 (518)
T PF10212_consen 407 EESREQLIKSYYMSRIEELTSQLQHADSKAVHFYAECRALQKRLESAEKEKESLEEELKEANQNISRLQDELETTRRNY 485 (518)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 3445564 8899999999999999998888999999999999999999999888888888888776666655444443
No 124
>PRK10884 SH3 domain-containing protein; Provisional
Probab=48.21 E-value=2.5e+02 Score=26.64 Aligned_cols=41 Identities=22% Similarity=0.231 Sum_probs=23.4
Q ss_pred HhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018258 303 EKSDFTLIELVEERERMKKQLEKSKNQKEKLESLCRSLQAE 343 (359)
Q Consensus 303 E~sn~aLiemaeEr~~~~ke~e~~kkq~ekLe~LCRaLQ~E 343 (359)
+.++..+.++-+++..+.+++..++.+++.|+..-..++..
T Consensus 128 ~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~~~ 168 (206)
T PRK10884 128 AQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQRT 168 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444555666666666666666666666655555543
No 125
>PRK15365 type III secretion system chaperone SseA; Provisional
Probab=48.09 E-value=1.2e+02 Score=26.19 Aligned_cols=18 Identities=28% Similarity=0.348 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 018258 250 RLQLTADGEKFQQFQDAL 267 (359)
Q Consensus 250 r~QL~~Y~eKF~EFQdTL 267 (359)
..+|+.|.+||.+||.-+
T Consensus 18 Ys~L~s~lkKfkq~q~~I 35 (107)
T PRK15365 18 YMQLNHCLKKFHQIRAKV 35 (107)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 468888999999888655
No 126
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=47.85 E-value=3.1e+02 Score=27.68 Aligned_cols=60 Identities=22% Similarity=0.421 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018258 275 ETFKQEIEKMAKSIKELKKENAFLKSKCEKSDFTLIELVEERERMKKQLEKSKNQKEKLESLCRSLQ 341 (359)
Q Consensus 275 ~tFKkEMEKMsKKiKkLEKEn~~~k~K~E~sn~aLiemaeEr~~~~ke~e~~kkq~ekLe~LCRaLQ 341 (359)
..|..+|-++..++-.+-++...+..++ ++..........++..+++.+..|.....+|.
T Consensus 189 qe~he~m~k~~~~~De~Rkeade~he~~-------ve~~~~~~e~~ee~~~~~~elre~~k~ik~l~ 248 (294)
T COG1340 189 QEYHEEMIKLFEEADELRKEADELHEEF-------VELSKKIDELHEEFRNLQNELRELEKKIKALR 248 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555544444444443333 33333333333344444444444444444433
No 127
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=47.69 E-value=3.8e+02 Score=28.63 Aligned_cols=55 Identities=16% Similarity=0.228 Sum_probs=40.1
Q ss_pred hhhhhhhhhhhhHHHHHHHHHHHHHHHHHhHHH-----------HHHHhHHHHHHHHHHHhhHHHH
Q 018258 80 RRKSSKRTFKSEKEFLEFTLKYQQVLAERDAAM-----------AVRDKLESLCRELQRQNKMLMD 134 (359)
Q Consensus 80 ~r~~~k~~~~ler~~~~~~~~~~qv~~Er~kai-----------~~K~KLE~LCRELQkqNK~lKE 134 (359)
|=....-+.....+|..+.+.|..+..+++.++ ....+.+.|-.||.+-+-.+--
T Consensus 125 ~~~~~~eL~~~k~EL~~lr~e~~~~~~~k~~A~~~aeea~~~a~~~~~kve~L~~Ei~~lke~l~~ 190 (522)
T PF05701_consen 125 YASAVAELDSVKQELEKLRQELASALDAKNAALKQAEEAVSAAEENEEKVEELSKEIIALKESLES 190 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445566667999999999999999999764 4467788888887766655543
No 128
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=47.23 E-value=2e+02 Score=25.18 Aligned_cols=53 Identities=25% Similarity=0.480 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018258 281 IEKMAKSIKELKKENAFLKSKCEKSDFTLIELVEERERMKKQLEKSKNQKEKLESLCRSL 340 (359)
Q Consensus 281 MEKMsKKiKkLEKEn~~~k~K~E~sn~aLiemaeEr~~~~ke~e~~kkq~ekLe~LCRaL 340 (359)
+....+.+..|+.+...+..||+ ++++|.-|+. ++++.++.-+.-|..+||..
T Consensus 63 ~~~~~~~~~~L~~el~~l~~ry~----t~LellGEK~---E~veEL~~Dv~DlK~myr~Q 115 (120)
T PF12325_consen 63 LRALKKEVEELEQELEELQQRYQ----TLLELLGEKS---EEVEELRADVQDLKEMYREQ 115 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH----HHHHHhcchH---HHHHHHHHHHHHHHHHHHHH
Confidence 34456667778888888888876 4566766665 44555677777888888864
No 129
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=47.06 E-value=3.9e+02 Score=28.63 Aligned_cols=23 Identities=35% Similarity=0.489 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Q 018258 323 LEKSKNQKEKLESLCRSLQAERK 345 (359)
Q Consensus 323 ~e~~kkq~ekLe~LCRaLQ~ER~ 345 (359)
-..+...+++=++|||.|-.-+.
T Consensus 298 QrkL~~e~erRealcr~lsEses 320 (552)
T KOG2129|consen 298 QRKLINELERREALCRMLSESES 320 (552)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhH
Confidence 34466677889999999876554
No 130
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=45.44 E-value=2.2e+02 Score=25.29 Aligned_cols=69 Identities=16% Similarity=0.230 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHh
Q 018258 236 AEQVSQLLATEKNLRLQLTADGEKFQQFQDALVKSNEVFETFKQEIEKMAKSIKELKKENAFLKSKCEKSDFT 308 (359)
Q Consensus 236 ~eqv~~l~~tE~eLr~QL~~Y~eKF~EFQdTL~KSNevF~tFKkEMEKMsKKiKkLEKEn~~~k~K~E~sn~a 308 (359)
-.+|..|.+.-..|..+|.-+.+++.+..+.+..+...+.. .+.+.++|.-||.+....-.+..-+..-
T Consensus 34 E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~~~----~E~l~rriq~LEeele~ae~~L~e~~ek 102 (143)
T PF12718_consen 34 EQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKRKSN----AEQLNRRIQLLEEELEEAEKKLKETTEK 102 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHh----HHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555666666666666666666666655543 3366666666666666555554443333
No 131
>PF05615 THOC7: Tho complex subunit 7; InterPro: IPR008501 The Tho complex (THOC) is involved in transcription elongation and mRNA export from the nucleus []. This entry represents the subunit THOC7, which is found in higher eukaryotes, and the non-homologous subunit Mft1p found in yeast. The funtions of these subunits are unknown, and it is not known if these subunits are functionally equivalent.
Probab=45.33 E-value=2e+02 Score=24.82 Aligned_cols=73 Identities=22% Similarity=0.221 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHHHHHHHHHHH
Q 018258 257 GEKFQQFQDALVKSNEVFETFKQEIEKMAKSIKELKKENAFLKSKCEKSDFTLIELVEERERMKKQLEKSKNQK 330 (359)
Q Consensus 257 ~eKF~EFQdTL~KSNevF~tFKkEMEKMsKKiKkLEKEn~~~k~K~E~sn~aLiemaeEr~~~~ke~e~~kkq~ 330 (359)
..-|..|+-.+.++.-+..+-+.|++.-..-...++.+....+...+.....|...-..|. ...+++.+-+.|
T Consensus 52 l~~l~~~e~~~~k~q~~~~~n~~e~e~Y~~~~~~i~~~i~~~k~~ie~lk~~L~~ak~~r~-~k~eyd~La~~I 124 (139)
T PF05615_consen 52 LKELAQFEFSILKSQLILEMNKRERENYEQLNEEIEQEIEQAKKEIEELKEELEEAKRVRQ-NKEEYDALAKKI 124 (139)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 3445677888888888888888888888888888888888888887777777765433332 333444444433
No 132
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=44.92 E-value=1.4e+02 Score=27.00 Aligned_cols=45 Identities=22% Similarity=0.383 Sum_probs=25.6
Q ss_pred HHHHHHHHHhhcHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
Q 018258 259 KFQQFQDALVKSNEVFETFKQ---EIEKMAKSIKELKKENAFLKSKCE 303 (359)
Q Consensus 259 KF~EFQdTL~KSNevF~tFKk---EMEKMsKKiKkLEKEn~~~k~K~E 303 (359)
.++.+..-|...|....+|+. ..+.+.++|..|+.++..++..|+
T Consensus 28 e~~~~k~ql~~~d~~i~~Lk~~~~d~eeLk~~i~~lq~~~~~~~~~~e 75 (155)
T PF06810_consen 28 ERDNLKTQLKEADKQIKDLKKSAKDNEELKKQIEELQAKNKTAKEEYE 75 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444445555555555555 666667777777766665544443
No 133
>PRK04863 mukB cell division protein MukB; Provisional
Probab=44.77 E-value=6.7e+02 Score=30.70 Aligned_cols=49 Identities=10% Similarity=0.245 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHH
Q 018258 236 AEQVSQLLATEKNLRLQLTADGEKFQQFQDALVKSNEVFETFKQEIEKM 284 (359)
Q Consensus 236 ~eqv~~l~~tE~eLr~QL~~Y~eKF~EFQdTL~KSNevF~tFKkEMEKM 284 (359)
......+.++-...+.+++.|...+..++..+..-++....++.+|..+
T Consensus 998 E~~~~~areql~qaq~q~~q~~q~l~slksslq~~~e~L~E~eqe~~~~ 1046 (1486)
T PRK04863 998 EQERTRAREQLRQAQAQLAQYNQVLASLKSSYDAKRQMLQELKQELQDL 1046 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3444555566667777778888888888888888888888888888776
No 134
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=44.21 E-value=2.1e+02 Score=24.64 Aligned_cols=64 Identities=17% Similarity=0.289 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018258 237 EQVSQLLATEKNLRLQLTADGEKFQQFQDALVKSNEVFETFKQEIEKMAKSIKELKKENAFLKS 300 (359)
Q Consensus 237 eqv~~l~~tE~eLr~QL~~Y~eKF~EFQdTL~KSNevF~tFKkEMEKMsKKiKkLEKEn~~~k~ 300 (359)
..++.+..+-..|+.-+-.+-.|+..+.+.|...-...-.+-+|++-++-+...|+|....+.-
T Consensus 5 ~eYsKLraQ~~vLKKaVieEQ~k~~~L~e~Lk~ke~~LRk~eqE~dSL~FrN~QL~kRV~~LQ~ 68 (102)
T PF10205_consen 5 QEYSKLRAQNQVLKKAVIEEQAKNAELKEQLKEKEQALRKLEQENDSLTFRNQQLTKRVEVLQE 68 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555666677777777888888888888888877778888888888887777776655543
No 135
>PHA02562 46 endonuclease subunit; Provisional
Probab=43.49 E-value=4e+02 Score=27.74 Aligned_cols=20 Identities=35% Similarity=0.180 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHhhhHhHHHH
Q 018258 293 KENAFLKSKCEKSDFTLIEL 312 (359)
Q Consensus 293 KEn~~~k~K~E~sn~aLiem 312 (359)
.+-..+..+|+..+..+.++
T Consensus 379 ~~l~~l~~~l~~~~~~~~~~ 398 (562)
T PHA02562 379 EELAKLQDELDKIVKTKSEL 398 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333
No 136
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=43.38 E-value=5.5e+02 Score=29.30 Aligned_cols=189 Identities=17% Similarity=0.221 Sum_probs=107.6
Q ss_pred HHHHhHHHHHHH---HHHHhhHHHHHHHHhhHH-HHHhhHhHHHHHHHHHHHHHHHHHhhhhhhhh---hHHHHHHHHHH
Q 018258 113 AVRDKLESLCRE---LQRQNKMLMDECKRVSSE-GQNLRLDLSAKFQDAIKDVSIKLEEQKDDCLS---QLKENEMLRTN 185 (359)
Q Consensus 113 ~~K~KLE~LCRE---LQkqNK~lKEE~~~~~~e-ee~kRkelsekFq~tL~dIq~~meE~~~~~~k---~~~EN~~LreK 185 (359)
.+-.|..-+|+| |-++.|-||+|...+.-- +-....+++..+..-=..++.+.-.+..--.+ ..++|+.|-+|
T Consensus 413 ~lEkKvqa~~kERDalr~e~kslk~ela~~l~~DeLaEkdE~I~~lm~EGEkLSK~ql~qs~iIkKLRAk~ke~etl~~K 492 (961)
T KOG4673|consen 413 TLEKKVQALTKERDALRREQKSLKKELAAALLKDELAEKDEIINQLMAEGEKLSKKQLAQSAIIKKLRAKIKEAETLEEK 492 (961)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHH
Confidence 445566667776 455666666665533322 22223334444433333333333322222222 24688889999
Q ss_pred HHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHH-HH------HHHHHHHHH-----------HHHHHHHH--
Q 018258 186 LKQLADQYALTEQQYAQKLKQKTLELQIGELKIKQHEEKLV-QE------QSQMKLYAE-----------QVSQLLAT-- 245 (359)
Q Consensus 186 LK~lieQYElRE~h~~k~lK~KeLE~QL~~AKleq~~e~~~-~E------k~q~k~l~e-----------qv~~l~~t-- 245 (359)
+..+|.-.+.-+.|+..+++.|+--..+..--+...+.... ++ ...+..+.. -.+.+.+.
T Consensus 493 ~ge~i~~L~sE~~~lk~il~~Kee~Ek~~~E~I~k~~ae~~rq~~~~~~sr~~~~~le~~~~a~qat~d~a~~Dlqk~nr 572 (961)
T KOG4673|consen 493 KGELITKLQSEENKLKSILRDKEETEKLLQETIEKHQAELTRQKDYYSNSRALAAALEAQALAEQATNDEARSDLQKENR 572 (961)
T ss_pred hhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhhhhHHHHhh
Confidence 99999999999999999999886433333222222221110 00 011111111 11112111
Q ss_pred --HHHHHHHHHHHHHHHHHHHHHHhhcHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018258 246 --EKNLRLQLTADGEKFQQFQDALVKSNEV----FETFKQEIEKMAKSIKELKKENAFLKSK 301 (359)
Q Consensus 246 --E~eLr~QL~~Y~eKF~EFQdTL~KSNev----F~tFKkEMEKMsKKiKkLEKEn~~~k~K 301 (359)
-.++|.+-..|+.-..++-.+|.+.-.- =.-||.|++.+-.+..--|--+..+..-
T Consensus 573 lkQdear~~~~~lvqqv~dLR~~L~~~Eq~aarrEd~~R~Ei~~LqrRlqaaE~R~eel~q~ 634 (961)
T KOG4673|consen 573 LKQDEARERESMLVQQVEDLRQTLSKKEQQAARREDMFRGEIEDLQRRLQAAERRCEELIQQ 634 (961)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 2367888899999999999999887653 3568999999988887777776666443
No 137
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=42.34 E-value=1.7e+02 Score=31.42 Aligned_cols=20 Identities=30% Similarity=0.373 Sum_probs=11.1
Q ss_pred HHHHhhHHHHHHHHhhHHHH
Q 018258 125 LQRQNKMLMDECKRVSSEGQ 144 (359)
Q Consensus 125 LQkqNK~lKEE~~~~~~eee 144 (359)
|..+|+.+++|+.++.+.+.
T Consensus 78 l~~~N~~l~~eN~~L~~r~~ 97 (472)
T TIGR03752 78 LISENEALKAENERLQKREQ 97 (472)
T ss_pred HHHHHHHHHHHHHHHHHhhh
Confidence 45566666666665444333
No 138
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=41.88 E-value=2.5e+02 Score=26.04 Aligned_cols=100 Identities=22% Similarity=0.236 Sum_probs=62.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hhHhHH-HHHH
Q 018258 239 VSQLLATEKNLRLQLTADGEKFQQFQDALVKSNEVFETFKQEIEKMAKSIKELKKENAFLKSKCEK---SDFTLI-ELVE 314 (359)
Q Consensus 239 v~~l~~tE~eLr~QL~~Y~eKF~EFQdTL~KSNevF~tFKkEMEKMsKKiKkLEKEn~~~k~K~E~---sn~aLi-emae 314 (359)
.......-..|+..+.....+..+.+..|...-.--.-. .|-..+-..+..|+++...++..++. +|...| .|-.
T Consensus 64 ~~~~~~~~~~l~~~~~~~~~~i~~l~~~i~~~~~~r~~~-~eR~~~l~~l~~l~~~~~~l~~el~~~~~~Dp~~i~~~~~ 142 (188)
T PF03962_consen 64 KQKRQNKLEKLQKEIEELEKKIEELEEKIEEAKKGREES-EEREELLEELEELKKELKELKKELEKYSENDPEKIEKLKE 142 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 344555566777777777777777776665542211111 45666777788888888888777653 344443 3444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 018258 315 ERERMKKQLEKSKNQKEKLESLCRS 339 (359)
Q Consensus 315 Er~~~~ke~e~~kkq~ekLe~LCRa 339 (359)
+-......+..+.--|.-|..-|+.
T Consensus 143 ~~~~~~~~anrwTDNI~~l~~~~~~ 167 (188)
T PF03962_consen 143 EIKIAKEAANRWTDNIFSLKSYLKK 167 (188)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 4555666667777777777777765
No 139
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=41.77 E-value=4.8e+02 Score=28.11 Aligned_cols=54 Identities=28% Similarity=0.324 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHH---------HHHHHHHHHHHHHHH
Q 018258 234 LYAEQVSQLLATEKNLRLQLTADGEKFQQFQDALVKSNE---------VFETFKQEIEKMAKS 287 (359)
Q Consensus 234 ~l~eqv~~l~~tE~eLr~QL~~Y~eKF~EFQdTL~KSNe---------vF~tFKkEMEKMsKK 287 (359)
.+...+..+.+.|...|.+|..|..++....-.|.++|= .|.....+|+.+...
T Consensus 397 ~~~~~l~~L~~dE~~Ar~~l~~~~~~l~~ikR~lek~nLPGlp~~y~~~~~~~~~~i~~l~~~ 459 (560)
T PF06160_consen 397 EINESLQSLRKDEKEAREKLQKLKQKLREIKRRLEKSNLPGLPEDYLDYFFDVSDEIEELSDE 459 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 455678889999999999999999999999999999983 455555555444443
No 140
>PF09602 PhaP_Bmeg: Polyhydroxyalkanoic acid inclusion protein (PhaP_Bmeg); InterPro: IPR011728 This entry describes a protein found in polyhydroxyalkanoic acid (PHA) gene regions and incorporated into PHA inclusions in Bacillus cereus and Bacillus megaterium. The role of the protein may include amino acid storage [].
Probab=41.65 E-value=2.9e+02 Score=25.65 Aligned_cols=28 Identities=25% Similarity=0.139 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 018258 243 LATEKNLRLQLTADGEKFQQFQDALVKS 270 (359)
Q Consensus 243 ~~tE~eLr~QL~~Y~eKF~EFQdTL~KS 270 (359)
..+-.+.+.+++.|++.|+.-|..|.++
T Consensus 135 k~~r~e~qk~~~~yv~~~k~~q~~~~~~ 162 (165)
T PF09602_consen 135 KLTREEWQKVLDAYVEQAKSSQKELAKK 162 (165)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3456677889999999999999877764
No 141
>smart00435 TOPEUc DNA Topoisomerase I (eukaryota). DNA Topoisomerase I (eukaryota), DNA topoisomerase V, Vaccina virus topoisomerase, Variola virus topoisomerase, Shope fibroma virus topoisomeras
Probab=40.72 E-value=2.2e+02 Score=29.80 Aligned_cols=54 Identities=22% Similarity=0.196 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018258 247 KNLRLQLTADGEKFQQFQDALVKSNEVFETFKQEIEKMAKSIKELKKENAFLKS 300 (359)
Q Consensus 247 ~eLr~QL~~Y~eKF~EFQdTL~KSNevF~tFKkEMEKMsKKiKkLEKEn~~~k~ 300 (359)
......+..|..=..++-..+++...|=-+|-.-|++|..+|..++.+...++.
T Consensus 245 ~s~~ek~~~yn~Anr~VAi~cnntraV~k~~~~~m~k~~~ki~~~~~~~~~~~~ 298 (391)
T smart00435 245 GNVAEKILAYNRANREVAILCNHQRTVSKTHEKSMEKLQEKIKALKYQLKRLKK 298 (391)
T ss_pred CCHHHHHHHHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677888999999999999999999999999999999999988876665543
No 142
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=40.67 E-value=4.4e+02 Score=27.42 Aligned_cols=81 Identities=27% Similarity=0.349 Sum_probs=60.1
Q ss_pred HHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHHHHHH-------------------
Q 018258 265 DALVKSNEVFETFKQEIEKMAKSIKELKKENAFLKSKCEKSDFTLIELVEERERMKKQLEK------------------- 325 (359)
Q Consensus 265 dTL~KSNevF~tFKkEMEKMsKKiKkLEKEn~~~k~K~E~sn~aLiemaeEr~~~~ke~e~------------------- 325 (359)
.-|..+.+||..-|.++..|.--+.+++.||..+.-..+......-+|.+|.+.+..++..
T Consensus 113 nqL~~~~~vf~k~k~~~q~LE~li~~~~EEn~~lqlqL~~l~~e~~Ekeeesq~LnrELaE~layqq~L~~eyQatf~eq 192 (401)
T PF06785_consen 113 NQLFHVREVFMKTKGDIQHLEGLIRHLREENQCLQLQLDALQQECGEKEEESQTLNRELAEALAYQQELNDEYQATFVEQ 192 (401)
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHhhcccccc
Confidence 4456688899999999999999999999999999888777777766666666655544322
Q ss_pred ------HHHHHHHHHHHHHHHHHH-hh
Q 018258 326 ------SKNQKEKLESLCRSLQAE-RK 345 (359)
Q Consensus 326 ------~kkq~ekLe~LCRaLQ~E-R~ 345 (359)
-+..|.+|++=.+-|-.| |+
T Consensus 193 ~~ml~kRQ~yI~~LEsKVqDLm~Eirn 219 (401)
T PF06785_consen 193 HSMLDKRQAYIGKLESKVQDLMYEIRN 219 (401)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 245677777777776555 44
No 143
>PF15294 Leu_zip: Leucine zipper
Probab=40.43 E-value=3.9e+02 Score=26.74 Aligned_cols=45 Identities=33% Similarity=0.389 Sum_probs=33.1
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhH-HHHHHHHHHHhHHHHH
Q 018258 171 DCLSQLKENEMLRTNLKQLADQYALTEQQYAQKLKQ-KTLELQIGELKIKQHE 222 (359)
Q Consensus 171 ~~~k~~~EN~~LreKLK~lieQYElRE~h~~k~lK~-KeLE~QL~~AKleq~~ 222 (359)
+-..+..||..|+++|+++-.++- ..++. ..|+.+|.+..+.+..
T Consensus 133 Ei~rLq~EN~kLk~rl~~le~~at-------~~l~Ek~kl~~~L~~lq~~~~~ 178 (278)
T PF15294_consen 133 EIDRLQEENEKLKERLKSLEKQAT-------SALDEKSKLEAQLKELQDEQGD 178 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHh
Confidence 334566899999999999988887 34443 4688888888875443
No 144
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=39.06 E-value=7.8e+02 Score=29.81 Aligned_cols=108 Identities=24% Similarity=0.291 Sum_probs=69.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHH
Q 018258 236 AEQVSQLLATEKNLRLQLTADGEKFQ-QFQDALVKSNEVFETFKQEIEKMAKSIKELKKENAFLKSKCEKSDFTLIELVE 314 (359)
Q Consensus 236 ~eqv~~l~~tE~eLr~QL~~Y~eKF~-EFQdTL~KSNevF~tFKkEMEKMsKKiKkLEKEn~~~k~K~E~sn~aLiemae 314 (359)
..++..+..+-..+..|++....+.. -|.+|+--.++.|..|-+.+..|.-+...+|.+...+...-......--+..=
T Consensus 267 ~~~~~~l~~e~~~l~~~~~~l~~~i~~~~~~t~~~l~~~~~n~~~~~~~~~~~~~~~e~~~~~l~~e~~~l~~~k~~~~~ 346 (1294)
T KOG0962|consen 267 LKQVKLLDSEHKNLKKQISRLREKILKIFDGTDEELGELLSNFEERLEEMGEKLRELEREISDLNEERSSLIQLKTELDL 346 (1294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcccccccchHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555666677777777666666 79999999999999999999999999999998888776332222222222222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018258 315 ERERMKKQLEKSKNQKEKLESLCRSLQAE 343 (359)
Q Consensus 315 Er~~~~ke~e~~kkq~ekLe~LCRaLQ~E 343 (359)
+-..+.-+.+....=...+..+|+.+.-+
T Consensus 347 ~~~~lq~e~~~~~~l~~~~~~~~~~~~~~ 375 (1294)
T KOG0962|consen 347 EQSELQAEAEFHQELKRQRDSLIQELAHQ 375 (1294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22223333333344444566677766654
No 145
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=38.12 E-value=7.5e+02 Score=29.34 Aligned_cols=225 Identities=18% Similarity=0.234 Sum_probs=142.8
Q ss_pred HHHHhHHHHHHHHHHHhhHHHHHHHH--hhHHHHHhhHhH-HHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHH
Q 018258 113 AVRDKLESLCRELQRQNKMLMDECKR--VSSEGQNLRLDL-SAKFQDAIKDVSIKLEEQKDDCLSQLKENEMLRTNLKQL 189 (359)
Q Consensus 113 ~~K~KLE~LCRELQkqNK~lKEE~~~--~~~eee~kRkel-sekFq~tL~dIq~~meE~~~~~~k~~~EN~~LreKLK~l 189 (359)
.-+.|.+.|--.+....+.+.+|-.. .....+..|+.+ -+=|...+++|...|+.-........+++..+...|...
T Consensus 184 qK~ekI~ell~yieerLreLEeEKeeL~~Yqkldk~rr~lEYtiYdrEl~E~~~~l~~le~~r~~~~e~s~~~~~~~~~~ 263 (1200)
T KOG0964|consen 184 QKREKINELLKYIEERLRELEEEKEELEKYQKLDKERRSLEYTIYDRELNEINGELERLEEDRSSAPEESEQYIDALDKV 263 (1200)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHhhhhhhhhhhHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHH
Confidence 44667777777777666666665432 233444444443 356777899999999876666666566666555555444
Q ss_pred HHHHhhHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHH-----HHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018258 190 ADQYALTEQQYAQKLKQKTLELQIGELKIKQHEEKLV-----QEQS----QMKLYAEQVSQLLATEKNLRLQLTADGEKF 260 (359)
Q Consensus 190 ieQYElRE~h~~k~lK~KeLE~QL~~AKleq~~e~~~-----~Ek~----q~k~l~eqv~~l~~tE~eLr~QL~~Y~eKF 260 (359)
.+--+. |.. .-++|+..|...+-+.++-.+. ..+. +++.++.++..=.++....-..|+-|.++.
T Consensus 264 ~d~~~~----~~~--~i~ele~~l~~l~~ekeq~~a~~t~~~k~kt~lel~~kdlq~~i~~n~q~r~~~l~~l~~~~~ki 337 (1200)
T KOG0964|consen 264 EDESED----LKC--EIKELENKLTNLREEKEQLKARETKISKKKTKLELKIKDLQDQITGNEQQRNLALHVLQKVKDKI 337 (1200)
T ss_pred HHHHHH----HHh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhhhhhhhhhHHHHHHHHHHHH
Confidence 333322 222 2235555554444322221111 1111 233466677666777888889999999999
Q ss_pred HHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHH-------------------HHHHHHH-HHHhhhHhHHHHHHHHHHHH
Q 018258 261 QQFQDALVKSNEVFETFKQEIEKMAKSIKELKK-------------------ENAFLKS-KCEKSDFTLIELVEERERMK 320 (359)
Q Consensus 261 ~EFQdTL~KSNevF~tFKkEMEKMsKKiKkLEK-------------------En~~~k~-K~E~sn~aLiemaeEr~~~~ 320 (359)
.+-++-|.+----|.....|=....+.+..|+. |...|-+ -.+..+..|.+.-+-...+.
T Consensus 338 ~e~~~EL~~I~Pky~~l~~ee~~~~~rl~~l~~~~~~l~~Kqgr~sqFssk~eRDkwir~ei~~l~~~i~~~ke~e~~lq 417 (1200)
T KOG0964|consen 338 EEKKDELSKIEPKYNSLVDEEKRLKKRLAKLEQKQRDLLAKQGRYSQFSSKEERDKWIRSEIEKLKRGINDTKEQENILQ 417 (1200)
T ss_pred HHHHHHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhccccccCcHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH
Confidence 999999999999999999999999999999997 5566633 35777777777666666666
Q ss_pred HHHHHH----HHHHHHHHHHHHHHHHH
Q 018258 321 KQLEKS----KNQKEKLESLCRSLQAE 343 (359)
Q Consensus 321 ke~e~~----kkq~ekLe~LCRaLQ~E 343 (359)
.+++.+ .+..+.+..|-+.+...
T Consensus 418 ~e~~~~e~~l~~~~e~i~~l~~si~e~ 444 (1200)
T KOG0964|consen 418 KEIEDLESELKEKLEEIKELESSINET 444 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHhhh
Confidence 666543 34455566666655533
No 146
>PRK13182 racA polar chromosome segregation protein; Reviewed
Probab=38.00 E-value=2e+02 Score=26.56 Aligned_cols=23 Identities=22% Similarity=0.411 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 018258 277 FKQEIEKMAKSIKELKKENAFLK 299 (359)
Q Consensus 277 FKkEMEKMsKKiKkLEKEn~~~k 299 (359)
-|.|||.|.+.+.+||--...+-
T Consensus 123 hr~e~ee~~~~l~~le~~~~~~e 145 (175)
T PRK13182 123 HRREMEEMLERLQKLEARLKKLE 145 (175)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Confidence 47999999999999997655543
No 147
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=36.55 E-value=2.5e+02 Score=24.05 Aligned_cols=46 Identities=28% Similarity=0.365 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018258 290 ELKKENAFLKSKCEKSDFTLIELVEERERMKKQLEKSKNQKEKLES 335 (359)
Q Consensus 290 kLEKEn~~~k~K~E~sn~aLiemaeEr~~~~ke~e~~kkq~ekLe~ 335 (359)
.||.....+-...+.....+.++.+|++.+.-+...++..+..+..
T Consensus 12 ~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~~~ 57 (107)
T PF06156_consen 12 QLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRERLEELEQ 57 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3444444444444444555666666666666666666555555544
No 148
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=36.41 E-value=3.5e+02 Score=25.04 Aligned_cols=61 Identities=28% Similarity=0.442 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Q 018258 275 ETFKQEIEKMAKSIKELKKENAFLKSKCEKSDFTLIE-LVEERERMKKQLEKSKNQKEKLES 335 (359)
Q Consensus 275 ~tFKkEMEKMsKKiKkLEKEn~~~k~K~E~sn~aLie-maeEr~~~~ke~e~~kkq~ekLe~ 335 (359)
..|..++..+...+..|+++...|+.+++.......+ ...+......+++.+++....|.+
T Consensus 123 ~~l~~~i~~L~~e~~~L~~~~~~l~~~~e~~ek~~~e~~~~~~k~~~~ei~~lk~~~~ql~~ 184 (189)
T PF10211_consen 123 QELEEEIEELEEEKEELEKQVQELKNKCEQLEKREEELRQEEEKKHQEEIDFLKKQNQQLKA 184 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556667777777777777777777777777666654 355556667777777777776654
No 149
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=35.95 E-value=3.2e+02 Score=28.30 Aligned_cols=58 Identities=22% Similarity=0.316 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018258 282 EKMAKSIKELKKENAFLKSKCEKSDFTLIELVEERERMKKQLEKSKNQKEKLESLCRS 339 (359)
Q Consensus 282 EKMsKKiKkLEKEn~~~k~K~E~sn~aLiemaeEr~~~~ke~e~~kkq~ekLe~LCRa 339 (359)
.++-+.+-.+-.+...++++.|..+.-.-+|.++++.++.++..+++.++=|.+=.|.
T Consensus 221 ~r~eeeme~~~aeq~slkRt~EeL~~G~~kL~~~~etLEqq~~~L~~niDIL~~k~~e 278 (365)
T KOG2391|consen 221 RRREEEMERLQAEQESLKRTEEELNIGKQKLVAMKETLEQQLQSLQKNIDILKSKVRE 278 (365)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 4555667778888899999999999999999999999999999999999988887777
No 150
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=35.82 E-value=3.1e+02 Score=24.68 Aligned_cols=34 Identities=35% Similarity=0.515 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHh
Q 018258 271 NEVFETFKQEIEKMAKSIKELKK---ENAFLKSKCEK 304 (359)
Q Consensus 271 NevF~tFKkEMEKMsKKiKkLEK---En~~~k~K~E~ 304 (359)
++-+.+++..+..-.+.|+.|.+ .+..|+.+.+.
T Consensus 26 ~~e~~~~k~ql~~~d~~i~~Lk~~~~d~eeLk~~i~~ 62 (155)
T PF06810_consen 26 KEERDNLKTQLKEADKQIKDLKKSAKDNEELKKQIEE 62 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHH
Confidence 44445555555555555555544 44444444333
No 151
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=35.50 E-value=2e+02 Score=24.65 Aligned_cols=50 Identities=20% Similarity=0.380 Sum_probs=40.5
Q ss_pred HHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 018258 258 EKFQQFQDALVKSNEVFETFKQEIEKMAKSIKELKKENAFLKSKCEKSDF 307 (359)
Q Consensus 258 eKF~EFQdTL~KSNevF~tFKkEMEKMsKKiKkLEKEn~~~k~K~E~sn~ 307 (359)
+.|.+|...|..-..-+...|..|..+......|.-||..|+.+......
T Consensus 8 ~~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~~~ 57 (107)
T PF06156_consen 8 DRLDQLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRERLEELEQ 57 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 66778888888888888888888888888888888888888888665544
No 152
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=35.43 E-value=3e+02 Score=23.97 Aligned_cols=104 Identities=20% Similarity=0.348 Sum_probs=48.3
Q ss_pred HHHHHHHHHhHHHHHHHhHHHHHHHHHHHhhHHHHHHHHhhHHHHHhhHhHHHHHHHHHHHHHHHHHhhhhhhhhhHHHH
Q 018258 100 KYQQVLAERDAAMAVRDKLESLCRELQRQNKMLMDECKRVSSEGQNLRLDLSAKFQDAIKDVSIKLEEQKDDCLSQLKEN 179 (359)
Q Consensus 100 ~~~qv~~Er~kai~~K~KLE~LCRELQkqNK~lKEE~~~~~~eee~kRkelsekFq~tL~dIq~~meE~~~~~~k~~~EN 179 (359)
=...|+.-|++....+.-|..-.+-|.-.+-.+.....+....-+..-.++. -++......+..+..... -+
T Consensus 39 ~i~~Ll~~~~r~~~~~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~-~~~~~~~~l~~~~~~~~~-------~~ 110 (151)
T PF11559_consen 39 CIYDLLQQRDRDMEQREDLSDKLRRLRSDIERLQNDVERLKEQLEELERELA-SAEEKERQLQKQLKSLEA-------KL 110 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH-------HH
Confidence 3445556666666666666665555555555555554444333333222222 333333333333332111 11
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHH
Q 018258 180 EMLRTNLKQLADQYALTEQQYAQKLKQKTLEL 211 (359)
Q Consensus 180 ~~LreKLK~lieQYElRE~h~~k~lK~KeLE~ 211 (359)
...++-+..+......+.-.|.+-+|.++.|+
T Consensus 111 k~~kee~~klk~~~~~~~tq~~~e~rkke~E~ 142 (151)
T PF11559_consen 111 KQEKEELQKLKNQLQQRKTQYEHELRKKEREI 142 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12222223333333333445557788888887
No 153
>PF07544 Med9: RNA polymerase II transcription mediator complex subunit 9; InterPro: IPR011425 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents subunit Med9 of the Mediator complex. Subunit Med9 is part of the middle module of the Mediator complex []; this associates with the core polymerase subunits to form the RNA polymerase II holoenzyme. Med9 alternatively known as the chromosome segregation protein, CSE2 (P33308 from SWISSPROT) is required, along with CSE1 (P33307 from SWISSPROT) for accurate mitotic chromosome segregation in Saccharomyces cerevisiae (Baker's yeast) [].; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=34.52 E-value=1.7e+02 Score=23.65 Aligned_cols=70 Identities=21% Similarity=0.268 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018258 272 EVFETFKQEIEKMAKSIKELKKENAFLKSKCEKSDFTLIEL---VEERERMKKQLEKSKNQKEKLESLCRSLQ 341 (359)
Q Consensus 272 evF~tFKkEMEKMsKKiKkLEKEn~~~k~K~E~sn~aLiem---aeEr~~~~ke~e~~kkq~ekLe~LCRaLQ 341 (359)
.+|.+...=-..+....+.+......++.|..++-..|-.+ -.--..+..++..++.++.+...+..-+.
T Consensus 7 ~i~~~l~~~~~d~~~~~kd~~~~~~~lk~Klq~ar~~i~~lpgi~~s~eeq~~~i~~Le~~i~~k~~~L~~~~ 79 (83)
T PF07544_consen 7 LIFDILHQISKDPPLSSKDLDTATGSLKHKLQKARAAIRELPGIDRSVEEQEEEIEELEEQIRKKREVLQKFK 79 (83)
T ss_pred hHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCccCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555544222277788999999999999999999888764 22234456677777777777776665554
No 154
>cd07605 I-BAR_IMD Inverse (I)-BAR, also known as the IRSp53/MIM homology Domain (IMD), a dimerization module that binds and bends membranes. Inverse (I)-BAR (or IMD) is a member of the Bin/Amphiphysin/Rvs (BAR) domain family. It is a dimerization and lipid-binding module that bends membranes and induces membrane protrusions in the opposite direction compared to classical BAR and F-BAR domains, which produce membrane invaginations. IMD domains are found in Insulin Receptor tyrosine kinase Substrate p53 (IRSp53), Missing in Metastasis (MIM), and Brain-specific Angiogenesis Inhibitor 1-Associated Protein 2-like (BAIAP2L) proteins. These are multi-domain proteins that act as scaffolding proteins and transducers of a variety of signaling pathways that link membrane dynamics and the underlying actin cytoskeleton. Most members contain an N-terminal IMD, an SH3 domain, and a WASP homology 2 (WH2) actin-binding motif at the C-terminus, exccept for MIM which does not carry an SH3 domain. Some me
Probab=34.08 E-value=4.3e+02 Score=25.36 Aligned_cols=70 Identities=26% Similarity=0.312 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----hhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 018258 271 NEVFETFKQEIEKMAKSIKELKKENAFLKSKCEK-----SDFTLIELVEERERMKKQLEKSKNQKEKLESLCRSLQAERK 345 (359)
Q Consensus 271 NevF~tFKkEMEKMsKKiKkLEKEn~~~k~K~E~-----sn~aLiemaeEr~~~~ke~e~~kkq~ekLe~LCRaLQ~ER~ 345 (359)
+.++..|..|...+.--+++.+.+...|++|.-+ ....+.+.+++-+....+++.+..+ ++.++|-.||.
T Consensus 111 ~~~~K~y~~E~K~~~~~l~K~~sel~Kl~KKs~~~~~~k~~~~l~~~~e~v~~k~~ele~~~~~-----~lr~al~EERr 185 (223)
T cd07605 111 NKFEKDYKKEYKQKREDLDKARSELKKLQKKSQKSGTGKYQEKLDQALEELNDKQKELEAFVSQ-----GLRDALLEERR 185 (223)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCcccHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHH
Confidence 3456677777777777777777777777777553 4556667777777666666665554 67788888875
No 155
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=34.04 E-value=4.4e+02 Score=25.44 Aligned_cols=67 Identities=21% Similarity=0.245 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 018258 279 QEIEKMAKSIKELKKENAFLKSKCEKSDFTLIELVEERERMKKQLEKSKNQKEKLESLCRSLQAERK 345 (359)
Q Consensus 279 kEMEKMsKKiKkLEKEn~~~k~K~E~sn~aLiemaeEr~~~~ke~e~~kkq~ekLe~LCRaLQ~ER~ 345 (359)
.+|+++.-.|..-......-....+.+....-.+..||....++|-....-|..|+++++....+|+
T Consensus 11 ~~lek~k~~i~~e~~~~e~ee~~L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~ 77 (230)
T PF10146_consen 11 LELEKLKNEILQEVESLENEEKCLEEYRKEMEELLQERMAHVEELRQINQDINTLENIIKQAESERN 77 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 156
>COG2900 SlyX Uncharacterized protein conserved in bacteria [Function unknown]
Probab=33.39 E-value=2.6e+02 Score=22.68 Aligned_cols=36 Identities=17% Similarity=0.192 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 018258 234 LYAEQVSQLLATEKNLRLQLTADGEKFQQFQDALVK 269 (359)
Q Consensus 234 ~l~eqv~~l~~tE~eLr~QL~~Y~eKF~EFQdTL~K 269 (359)
.|...|-+....=..++.||..-.+||..++.+.--
T Consensus 26 eLn~~laEq~~~i~k~q~qlr~L~~kl~~~~~~~~~ 61 (72)
T COG2900 26 ELNDALAEQQLVIDKLQAQLRLLTEKLKDLQPSAIA 61 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccC
Confidence 444555555555678899999999999999876543
No 157
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=33.29 E-value=2.7e+02 Score=22.79 Aligned_cols=89 Identities=21% Similarity=0.261 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHH---HHHHHHHHHHHHHHHHHHHH
Q 018258 257 GEKFQQFQDALVKSNEVFETFKQEIEKMAKSIKELKKENAFLKSKCEKSDFTLIELV---EERERMKKQLEKSKNQKEKL 333 (359)
Q Consensus 257 ~eKF~EFQdTL~KSNevF~tFKkEMEKMsKKiKkLEKEn~~~k~K~E~sn~aLiema---eEr~~~~ke~e~~kkq~ekL 333 (359)
.+.++.|...|.+=+ .+...=.++-.+-...+.+-.+...++.+.-...+.+-... +++..+..+...++.++..|
T Consensus 8 r~n~e~v~~~l~~R~-~~~~~vd~i~~ld~~~r~l~~~~e~lr~~rN~~sk~I~~~~~~~~~~~~l~~e~~~lk~~i~~l 86 (108)
T PF02403_consen 8 RENPEEVRENLKKRG-GDEEDVDEIIELDQERRELQQELEELRAERNELSKEIGKLKKAGEDAEELKAEVKELKEEIKEL 86 (108)
T ss_dssp HHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHTTCCTHHHHHHHHHHHHHHHHH
T ss_pred HhCHHHHHHHHHHcC-CCHhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHH
Confidence 344555555555444 22223334444445555555555555555544444444332 24566666777777788888
Q ss_pred HHHHHHHHHHhhc
Q 018258 334 ESLCRSLQAERKQ 346 (359)
Q Consensus 334 e~LCRaLQ~ER~~ 346 (359)
+.-...+..+...
T Consensus 87 e~~~~~~e~~l~~ 99 (108)
T PF02403_consen 87 EEQLKELEEELNE 99 (108)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 8888887777654
No 158
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=33.27 E-value=8e+02 Score=28.24 Aligned_cols=156 Identities=22% Similarity=0.263 Sum_probs=82.9
Q ss_pred hHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHH--HHHHHHHHHhHHHHHHHHH---HHHHH-HHHHHHHHHHHHHHHHH
Q 018258 175 QLKENEMLRTNLKQLADQYALTEQQYAQKLKQK--TLELQIGELKIKQHEEKLV---QEQSQ-MKLYAEQVSQLLATEKN 248 (359)
Q Consensus 175 ~~~EN~~LreKLK~lieQYElRE~h~~k~lK~K--eLE~QL~~AKleq~~e~~~---~Ek~q-~k~l~eqv~~l~~tE~e 248 (359)
++.||..||.+|..|-.|+-.+|.-- +.-..- .+|+ +-|+-.+..+. +|..+ ...|+....+|.+.-..
T Consensus 392 lrsENaqLrRrLrilnqqlreqe~~~-k~~~~~~~n~El----~sLqSlN~~Lq~ql~es~k~~e~lq~kneellk~~e~ 466 (861)
T PF15254_consen 392 LRSENAQLRRRLRILNQQLREQEKAE-KTSGSQDCNLEL----FSLQSLNMSLQNQLQESLKSQELLQSKNEELLKVIEN 466 (861)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHhhc-ccCCCcccchhh----HHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHH
Confidence 36799999999999988866544321 000000 2332 22222111111 11111 12233344445555555
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHHHHHHHHH
Q 018258 249 LRLQLTADGEKFQQFQDALVKSNEVFETFKQEIEKMAKSIKELKKENAFLKSKCEKSDFTLIELVEERERMKKQLEKSKN 328 (359)
Q Consensus 249 Lr~QL~~Y~eKF~EFQdTL~KSNevF~tFKkEMEKMsKKiKkLEKEn~~~k~K~E~sn~aLiemaeEr~~~~ke~e~~kk 328 (359)
++..=.-|.+=|.+=.+.|.++...|+ -||.++ --|....-..+..+..-|-.--.|+..+.--+..-..
T Consensus 467 q~~Enk~~~~~~~ekd~~l~~~kq~~d---~e~~ri-------k~ev~eal~~~k~~q~kLe~sekEN~iL~itlrQrDa 536 (861)
T PF15254_consen 467 QKEENKRLRKMFQEKDQELLENKQQFD---IETTRI-------KIEVEEALVNVKSLQFKLEASEKENQILGITLRQRDA 536 (861)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHH---HHHHHH-------HHHHHHHHHHHHHHhhhHHHHHhhhhHhhhHHHHHHH
Confidence 555555566667776777777777775 233332 2233333344444444444444445555555555566
Q ss_pred HHHHHHHHHHHHHHHhh
Q 018258 329 QKEKLESLCRSLQAERK 345 (359)
Q Consensus 329 q~ekLe~LCRaLQ~ER~ 345 (359)
.+.+|.-|.|.||.==.
T Consensus 537 Ei~RL~eLtR~LQ~Sma 553 (861)
T PF15254_consen 537 EIERLRELTRTLQNSMA 553 (861)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 78899999999997643
No 159
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=33.11 E-value=2.2e+02 Score=24.60 Aligned_cols=46 Identities=15% Similarity=0.278 Sum_probs=22.6
Q ss_pred HHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018258 258 EKFQQFQDALVKSNEVFETFKQEIEKMAKSIKELKKENAFLKSKCE 303 (359)
Q Consensus 258 eKF~EFQdTL~KSNevF~tFKkEMEKMsKKiKkLEKEn~~~k~K~E 303 (359)
++|.+|...|.....-+...|..|..+......|.-||.-|+.+.+
T Consensus 8 d~l~~le~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~ 53 (110)
T PRK13169 8 DALDDLEQNLGVLLKELGALKKQLAELLEENTALRLENDKLRERLE 53 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444445555555555555555555555555444
No 160
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=33.04 E-value=4.5e+02 Score=25.31 Aligned_cols=53 Identities=19% Similarity=0.319 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHHHHHHHHHHHH
Q 018258 279 QEIEKMAKSIKELKKENAFLKSKCEKSDFTLIELVEERERMKKQLEKSKNQKE 331 (359)
Q Consensus 279 kEMEKMsKKiKkLEKEn~~~k~K~E~sn~aLiemaeEr~~~~ke~e~~kkq~e 331 (359)
.+|.++.......+++...|-.+......-+..|.+++.....+...|+.++.
T Consensus 61 e~~~rL~~~~~~~~eEk~~Le~e~~e~~~~i~~l~ee~~~ke~Ea~~lq~el~ 113 (246)
T PF00769_consen 61 EEKQRLEEEAEMQEEEKEQLEQELREAEAEIARLEEESERKEEEAEELQEELE 113 (246)
T ss_dssp HHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444466666667777777777777777777777777766666543
No 161
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=32.93 E-value=2.8e+02 Score=22.84 Aligned_cols=61 Identities=16% Similarity=0.312 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH---HHhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018258 282 EKMAKSIKELKKENAFLKSK---CEKSDFTLIELVEERERMKKQLEKSKNQKEKLESLCRSLQA 342 (359)
Q Consensus 282 EKMsKKiKkLEKEn~~~k~K---~E~sn~aLiemaeEr~~~~ke~e~~kkq~ekLe~LCRaLQ~ 342 (359)
.....++..||+-...-..+ .......+-.|-..|..+..+++.......+|+..|+.+-.
T Consensus 11 ~rL~~aid~LE~~v~~r~~~~~~~~~~e~ei~~l~~dr~rLa~eLD~~~ar~~~Le~~~~Evs~ 74 (89)
T PF13747_consen 11 TRLEAAIDRLEKAVDRRLERDRKRDELEEEIQRLDADRSRLAQELDQAEARANRLEEANREVSR 74 (89)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 34444555555443332221 13334455667888899999999999999999999987754
No 162
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=32.90 E-value=6.8e+02 Score=27.29 Aligned_cols=37 Identities=30% Similarity=0.403 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHH
Q 018258 242 LLATEKNLRLQLTADGEKFQQFQDALVKSNEVFETFK 278 (359)
Q Consensus 242 l~~tE~eLr~QL~~Y~eKF~EFQdTL~KSNevF~tFK 278 (359)
|..|...-..||+.-+|-+-...+.|.+--+.+.++|
T Consensus 478 L~TTr~NYE~QLs~MSEHLasmNeqL~~Q~eeI~~LK 514 (518)
T PF10212_consen 478 LETTRRNYEEQLSMMSEHLASMNEQLAKQREEIQTLK 514 (518)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4456677777888888888888888888888888777
No 163
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=32.66 E-value=8e+02 Score=28.01 Aligned_cols=70 Identities=34% Similarity=0.358 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHH-hhcCCC
Q 018258 279 QEIEKMAKSIKELKKENAFLKSKCEKSDFTLIELVEERE--------RMKKQLEKSKNQKEKLESLCRSLQAE-RKQNSV 349 (359)
Q Consensus 279 kEMEKMsKKiKkLEKEn~~~k~K~E~sn~aLiemaeEr~--------~~~ke~e~~kkq~ekLe~LCRaLQ~E-R~~~~~ 349 (359)
.|+..+.-++..+||||..|+--.--....|-=-.+||. ..+++++. -++|.+|++=|+.|..= |+-+|+
T Consensus 134 ~~~~~l~~~l~~~eken~~Lkye~~~~~keleir~~E~~~~~~~ae~a~kqhle~-vkkiakLEaEC~rLr~l~rk~lpg 212 (769)
T PF05911_consen 134 AEIEDLMARLESTEKENSSLKYELHVLSKELEIRNEEREYSRRAAEAASKQHLES-VKKIAKLEAECQRLRALVRKKLPG 212 (769)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhccCCC
Confidence 466677778888889988887665555544422233332 23444443 56899999999999987 766554
No 164
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=32.59 E-value=5.1e+02 Score=25.74 Aligned_cols=24 Identities=21% Similarity=0.221 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 018258 239 VSQLLATEKNLRLQLTADGEKFQQ 262 (359)
Q Consensus 239 v~~l~~tE~eLr~QL~~Y~eKF~E 262 (359)
+.++-+-|.+|+.+-..|..||--
T Consensus 224 mdEyEklE~EL~~lY~~Y~~kfRN 247 (267)
T PF10234_consen 224 MDEYEKLEEELQKLYEIYVEKFRN 247 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344566799999999999999985
No 165
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=32.50 E-value=7.1e+02 Score=27.37 Aligned_cols=150 Identities=21% Similarity=0.082 Sum_probs=80.7
Q ss_pred cccccCCCCCccccccccccccccccccccccccccCCCCCchhHhhhhh---hhhhhhh-------HHHHHHHHHHHHH
Q 018258 35 SEASAGASGCSTEERSEAQGIIKKDVSVSESDDTLKNRKPENTETRRKSS---KRTFKSE-------KEFLEFTLKYQQV 104 (359)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~---k~~~~le-------r~~~~~~~~~~qv 104 (359)
+.++..+--|++-.|.-+.++.--+ ..--+-.-+++-.|.+. |-++ |+.+.|+ -.+-..-.++.|+
T Consensus 41 ~et~~~~~~~~~~~~~~tkt~~d~d--~lt~lle~k~~dlElaA--kiGqsllk~nk~Lq~~nesLeEqv~~~~d~vvql 116 (596)
T KOG4360|consen 41 EETSAYPQLRGTRVRQMTKTYNDID--FLTELLEEKRRDLELAA--KIGQSLLKANKALQEDNESLEEQVDAPWDRVVQL 116 (596)
T ss_pred ccCccchhccCCccchhhccccchH--HHHHHHhcccchhHHHH--HHHHHHHhhhhhhhhhhhhhHhhhcchHHHHHHh
Confidence 3455566677777776666543222 12122222333334332 3333 3444444 2333344455666
Q ss_pred HHHHhHHH-------------------------------HHHHhHHHHHHHHHHHhhHHHHHHHHhhHHHHHhhHh---H
Q 018258 105 LAERDAAM-------------------------------AVRDKLESLCRELQRQNKMLMDECKRVSSEGQNLRLD---L 150 (359)
Q Consensus 105 ~~Er~kai-------------------------------~~K~KLE~LCRELQkqNK~lKEE~~~~~~eee~kRke---l 150 (359)
.-|.++.+ ..+.-||.|| ...|-+++|+.+...+-.--|.+ .
T Consensus 117 ~hels~k~ellr~ys~~~ees~~~~v~~~P~~~~~s~S~~~~~~~EaL~----ekLk~~~een~~lr~k~~llk~Et~~~ 192 (596)
T KOG4360|consen 117 GHELSRKDELLRGYSAAIEESEAASVCSTPLVSNESRSAFQRELLEALQ----EKLKPLEEENTQLRSKAMLLKTETLTY 192 (596)
T ss_pred hhhhhhhhhhhheeeeccccccccccccCCCccCcchhhHHHHHHHHHH----hhcCChHHHHHHHHHHHHHHHhhhcch
Confidence 66666532 2233466665 44566666666655554444444 4
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHhh
Q 018258 151 SAKFQDAIKDVSIKLEEQKDDCLSQLKENEMLRTNLKQLADQYAL 195 (359)
Q Consensus 151 sekFq~tL~dIq~~meE~~~~~~k~~~EN~~LreKLK~lieQYEl 195 (359)
.++=+.+.+++-..+. +.|.+...--++|..|-+.++.|||-
T Consensus 193 ~~keq~~y~~~~Kelr---dtN~q~~s~~eel~~kt~el~~q~Ee 234 (596)
T KOG4360|consen 193 EEKEQQLYGDCVKELR---DTNTQARSGQEELQSKTKELSRQQEE 234 (596)
T ss_pred hHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666667665554 33444445666788999999999984
No 166
>PF04642 DUF601: Protein of unknown function, DUF601; InterPro: IPR006736 This family consists of several uncharacterised plant proteins which share a conserved region.
Probab=32.46 E-value=1.9e+02 Score=28.97 Aligned_cols=69 Identities=20% Similarity=0.345 Sum_probs=55.2
Q ss_pred HHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018258 262 QFQDALVKSNEVFETFKQEIEKMAKSIKELKKENAFLKSKCEKSDFTLIELVEERERMKKQLEKSKNQKEKLE 334 (359)
Q Consensus 262 EFQdTL~KSNevF~tFKkEMEKMsKKiKkLEKEn~~~k~K~E~sn~aLiemaeEr~~~~ke~e~~kkq~ekLe 334 (359)
+=-++..+.|.|-.. |-..--.+-.||--|..|-+|++....+.++.++..+....++..+..++.+|+
T Consensus 204 eNar~V~kAnsVldR----mk~aEaqvneLEvsN~DLsaKLe~gknaY~~~ieke~q~raeL~acEEkl~kme 272 (311)
T PF04642_consen 204 ENARAVEKANSVLDR----MKEAEAQVNELEVSNIDLSAKLEPGKNAYLAAIEKENQARAELNACEEKLKKME 272 (311)
T ss_pred hhHHHHHHHHHHHHH----HHHHHhhhhheecccHHHHHhhcCCcchHHHHHhhHHHHHHHHHHHHHHHhccc
Confidence 334556667766544 334456778899999999999999999999999999999999999888888775
No 167
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=32.02 E-value=8.1e+02 Score=27.93 Aligned_cols=111 Identities=22% Similarity=0.375 Sum_probs=81.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHH
Q 018258 233 KLYAEQVSQLLATEKNLRLQLTADGEKFQQFQDALVKSNEVFETFKQEIEKMAKSIKELKKENAFLKSKCEKSDFTLIEL 312 (359)
Q Consensus 233 k~l~eqv~~l~~tE~eLr~QL~~Y~eKF~EFQdTL~KSNevF~tFKkEMEKMsKKiKkLEKEn~~~k~K~E~sn~aLiem 312 (359)
..+.+++..+...-..|...|..+.+..+.++.-|.-+...+..++.+++-..+.-..+|-+....+..++.....+-..
T Consensus 592 ~el~eelE~le~eK~~Le~~L~~~~d~lE~~~~qL~E~E~~L~eLq~eL~~~keS~s~~E~ql~~~~e~~e~le~~~~~~ 671 (769)
T PF05911_consen 592 KELEEELEKLESEKEELEMELASCQDQLESLKNQLKESEQKLEELQSELESAKESNSLAETQLKAMKESYESLETRLKDL 671 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHH
Confidence 34556666666666778888888888888888888888888888888888888888888888888877777777666665
Q ss_pred HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHH
Q 018258 313 VEERERMKKQLEKSKNQKE-------KLESLCRSLQAE 343 (359)
Q Consensus 313 aeEr~~~~ke~e~~kkq~e-------kLe~LCRaLQ~E 343 (359)
-.|...+...+..+...++ -+..=|+.|+.+
T Consensus 672 e~E~~~l~~Ki~~Le~Ele~er~~~~e~~~kc~~Le~e 709 (769)
T PF05911_consen 672 EAEAEELQSKISSLEEELEKERALSEELEAKCRELEEE 709 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHH
Confidence 5555556656555555544 345558888877
No 168
>PRK04406 hypothetical protein; Provisional
Probab=31.61 E-value=2.7e+02 Score=22.30 Aligned_cols=49 Identities=18% Similarity=0.260 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018258 281 IEKMAKSIKELKKENAFLKSKCEKSDFTLIELVEERERMKKQLEKSKNQKEKLESLCRSLQAE 343 (359)
Q Consensus 281 MEKMsKKiKkLEKEn~~~k~K~E~sn~aLiemaeEr~~~~ke~e~~kkq~ekLe~LCRaLQ~E 343 (359)
|+.|..+|-.||--....-.-.+..|..+.. ..++|+.|..-|+.|-..
T Consensus 6 ~~~le~Ri~~LE~~lAfQE~tIe~LN~~v~~--------------Qq~~I~~L~~ql~~L~~r 54 (75)
T PRK04406 6 IEQLEERINDLECQLAFQEQTIEELNDALSQ--------------QQLLITKMQDQMKYVVGK 54 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHH
Confidence 4556677777776666665555665555554 455666666666666444
No 169
>PRK05729 valS valyl-tRNA synthetase; Reviewed
Probab=31.57 E-value=1.6e+02 Score=33.40 Aligned_cols=30 Identities=20% Similarity=0.358 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 018258 277 FKQEIEKMAKSIKELKKENAFLKSKCEKSD 306 (359)
Q Consensus 277 FKkEMEKMsKKiKkLEKEn~~~k~K~E~sn 306 (359)
+.+|.+++.|++.+|+++...+..|..+.+
T Consensus 809 ~~~e~~rL~K~l~kl~~ei~~~~~kL~n~~ 838 (874)
T PRK05729 809 VEAELARLEKELAKLEKEIERVEKKLSNEG 838 (874)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCch
Confidence 679999999999999999999999975544
No 170
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=31.05 E-value=98 Score=29.23 Aligned_cols=87 Identities=21% Similarity=0.239 Sum_probs=58.6
Q ss_pred HhhcHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHhhhHhHHHH--HHHHHHHHHHHHHHHHHHHHHHHH
Q 018258 267 LVKSNEVFETFKQEIEKMAKSIKELKK--------ENAFLKSKCEKSDFTLIEL--VEERERMKKQLEKSKNQKEKLESL 336 (359)
Q Consensus 267 L~KSNevF~tFKkEMEKMsKKiKkLEK--------En~~~k~K~E~sn~aLiem--aeEr~~~~ke~e~~kkq~ekLe~L 336 (359)
=..|-++|..|+.|.-.-+--.+-|+- +..-=+.|.=-.|+...+| -++-+.++.++..+..|+..|..-
T Consensus 22 P~ssq~v~~~lq~e~lgktavqk~Ld~La~~Gki~~K~YGKqKIY~a~QDqF~~~~~eel~~ld~~i~~l~ek~q~l~~t 101 (201)
T KOG4603|consen 22 PYSSQDVFGNLQREHLGKTAVQKTLDQLAQQGKIKEKMYGKQKIYFADQDQFDMVSDEELQVLDGKIVALTEKVQSLQQT 101 (201)
T ss_pred CCchHHHHHHHHHHhccchHHHHHHHHHHHcCchhHHhccceeeEeecHHhhcCCChHHHHHHhHHHHHHHHHHHHHHHH
Confidence 345778999999998222222222321 1122244444567777777 467788889999999999999999
Q ss_pred HHHHHHHhhcCCCCCCC
Q 018258 337 CRSLQAERKQNSVGSNN 353 (359)
Q Consensus 337 CRaLQ~ER~~~~~~~~~ 353 (359)
|+-+.+|-+.+.+..+.
T Consensus 102 ~s~veaEik~L~s~Lt~ 118 (201)
T KOG4603|consen 102 CSYVEAEIKELSSALTT 118 (201)
T ss_pred HHHHHHHHHHHHHhcCh
Confidence 99999998877665543
No 171
>PF13942 Lipoprotein_20: YfhG lipoprotein
Probab=31.01 E-value=4.2e+02 Score=24.95 Aligned_cols=53 Identities=26% Similarity=0.366 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018258 290 ELKKENAFLKSKCEKSDFTLIELVEERERMKKQLEKSKNQKEKLESLCRSLQA 342 (359)
Q Consensus 290 kLEKEn~~~k~K~E~sn~aLiemaeEr~~~~ke~e~~kkq~ekLe~LCRaLQ~ 342 (359)
.|.-|..-..+=-..++..|..|.+....+..+++....|++.|-.+=|.|-.
T Consensus 113 ~L~eEr~Ry~rLQqssD~~lD~Lr~qq~~Lq~qL~~T~RKLEnLTDIERQLSS 165 (179)
T PF13942_consen 113 QLSEERARYQRLQQSSDSELDALRQQQQRLQYQLDTTTRKLENLTDIERQLSS 165 (179)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhc
Confidence 35556666666667888999999999999999999999999999999999974
No 172
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=30.97 E-value=6.8e+02 Score=26.72 Aligned_cols=55 Identities=20% Similarity=0.185 Sum_probs=42.3
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHhHH----HHHH---HhHHHHHHHHHHHhhHHHHHHHH
Q 018258 84 SKRTFKSEKEFLEFTLKYQQVLAERDAA----MAVR---DKLESLCRELQRQNKMLMDECKR 138 (359)
Q Consensus 84 ~k~~~~ler~~~~~~~~~~qv~~Er~ka----i~~K---~KLE~LCRELQkqNK~lKEE~~~ 138 (359)
..++-.|..++.+.-+++.-+.+++... -.++ .++|-+-++||++|..+.+|+.+
T Consensus 12 dqr~~~~~~~laq~~k~~s~~~aq~~~~~a~~~ai~a~~~~~E~~l~~Lq~e~~~l~e~~v~ 73 (459)
T KOG0288|consen 12 DQRLIDLNTELAQCEKAQSRLSAQLVILRAESRAIKAKLQEKELELNRLQEENTQLNEERVR 73 (459)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4467788889999998888887777642 2223 45677889999999999999887
No 173
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=30.74 E-value=3.1e+02 Score=22.66 Aligned_cols=63 Identities=14% Similarity=0.237 Sum_probs=35.4
Q ss_pred HHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHHH
Q 018258 260 FQQFQDALVKSNEVFETFKQEIEKMAKSIKELKKENAFLKSKCEKSDFTLIELVEERERMKKQ 322 (359)
Q Consensus 260 F~EFQdTL~KSNevF~tFKkEMEKMsKKiKkLEKEn~~~k~K~E~sn~aLiemaeEr~~~~ke 322 (359)
|++++.-+..+=++..-++-|++..--+.-.|..++...+.-.+......-.+-.|+..|..-
T Consensus 6 leqLE~KIqqAvdtI~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~Wqer 68 (79)
T PRK15422 6 FEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQER 68 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 555666666666677777777777666666666666655544443333333333444433333
No 174
>PF13990 YjcZ: YjcZ-like protein
Probab=30.51 E-value=5.6e+02 Score=25.60 Aligned_cols=55 Identities=25% Similarity=0.359 Sum_probs=38.5
Q ss_pred HHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHH
Q 018258 158 IKDVSIKLEEQKDDCLSQLKENEMLRTNLKQLADQYALTEQQYAQKLKQKTLELQ 212 (359)
Q Consensus 158 L~dIq~~meE~~~~~~k~~~EN~~LreKLK~lieQYElRE~h~~k~lK~KeLE~Q 212 (359)
|..|...+..-.........--..|++.|..+.++|..|-.+.++.+-+.+|.++
T Consensus 71 LT~vnq~L~~l~~~~~~~a~~s~~l~~qL~~l~~~f~qr~~~lE~~L~q~~l~~~ 125 (270)
T PF13990_consen 71 LTRVNQRLTELQQDVARLAQYSPSLRQQLEALAEQFNQRAAHLEKALSQRGLTQQ 125 (270)
T ss_pred HHHHHHHHHHHHHhhhhhcccChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 4444444443322222222344679999999999999999999999999998874
No 175
>KOG3856 consensus Uncharacterized conserved protein [Function unknown]
Probab=30.02 E-value=1.1e+02 Score=27.31 Aligned_cols=38 Identities=21% Similarity=0.324 Sum_probs=33.3
Q ss_pred HHHHhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018258 300 SKCEKSDFTLIELVEERERMKKQLEKSKNQKEKLESLC 337 (359)
Q Consensus 300 ~K~E~sn~aLiemaeEr~~~~ke~e~~kkq~ekLe~LC 337 (359)
.-++.+.+.|-+|+..|+.+...+..|..+|-.+|+-.
T Consensus 10 ~~ye~~kaEL~elikkrqe~eetl~nLe~qIY~~EgsY 47 (135)
T KOG3856|consen 10 KSYEDTKAELAELIKKRQELEETLANLERQIYAFEGSY 47 (135)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 34688999999999999999999999999999888643
No 176
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=30.00 E-value=5.7e+02 Score=25.54 Aligned_cols=45 Identities=36% Similarity=0.417 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHH
Q 018258 275 ETFKQEIEKMAKSIKELKKENAFLKSKCEKSDFTLIELVEERERM 319 (359)
Q Consensus 275 ~tFKkEMEKMsKKiKkLEKEn~~~k~K~E~sn~aLiemaeEr~~~ 319 (359)
.....|+..+.+....|.++...+..-.+..+..+.++..+...+
T Consensus 46 ~~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l 90 (314)
T PF04111_consen 46 EELEEELEKLEQEEEELLQELEELEKEREELDQELEELEEELEEL 90 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555555555555555555555555555555444443333
No 177
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=29.80 E-value=2.4e+02 Score=21.16 Aligned_cols=34 Identities=29% Similarity=0.379 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018258 309 LIELVEERERMKKQLEKSKNQKEKLESLCRSLQA 342 (359)
Q Consensus 309 LiemaeEr~~~~ke~e~~kkq~ekLe~LCRaLQ~ 342 (359)
+-.+-.....+..+...+...+..|...|..|..
T Consensus 28 ~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~~ 61 (64)
T PF00170_consen 28 IEELEEKVEELESENEELKKELEQLKKEIQSLKS 61 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3334444444445555555555556666655554
No 178
>PF12999 PRKCSH-like: Glucosidase II beta subunit-like
Probab=29.24 E-value=2.4e+02 Score=26.33 Aligned_cols=45 Identities=20% Similarity=0.389 Sum_probs=22.9
Q ss_pred HHHHHHHHHhhHHHHHHHHhhHHHHHhhHhHHHHHHHHHHHHHHH
Q 018258 120 SLCRELQRQNKMLMDECKRVSSEGQNLRLDLSAKFQDAIKDVSIK 164 (359)
Q Consensus 120 ~LCRELQkqNK~lKEE~~~~~~eee~kRkelsekFq~tL~dIq~~ 164 (359)
.-|.|+.++-+...++-....+++-..|.+|...-+....+++.+
T Consensus 117 N~C~e~~~~~~~~~~~~~~~~~~G~~~r~~~i~~a~~~~~e~~~~ 161 (176)
T PF12999_consen 117 NTCAELGKEYREELEEEEEIYKEGLKIRQELIEEAKKKREELEKK 161 (176)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666555555555555555555555555554444433333333
No 179
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=28.49 E-value=3.1e+02 Score=21.97 Aligned_cols=53 Identities=25% Similarity=0.323 Sum_probs=39.5
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHhH------------HHHHHHhHHHHHHHHHHHhhHHHHH
Q 018258 83 SSKRTFKSEKEFLEFTLKYQQVLAERDA------------AMAVRDKLESLCRELQRQNKMLMDE 135 (359)
Q Consensus 83 ~~k~~~~ler~~~~~~~~~~qv~~Er~k------------ai~~K~KLE~LCRELQkqNK~lKEE 135 (359)
....+..|.++...+.-++.-+....++ .|-+|.-+++|-|||+.-.+.|.+-
T Consensus 5 qe~~i~~L~KENF~LKLrI~fLee~l~~~~~~~~~~~~keNieLKve~~~L~~el~~~~~~l~~a 69 (75)
T PF07989_consen 5 QEEQIDKLKKENFNLKLRIYFLEERLQKLGPESIEELLKENIELKVEVESLKRELQEKKKLLKEA 69 (75)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4467889999999999998887765543 2567777888888887777766654
No 180
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=28.48 E-value=1.1e+03 Score=28.20 Aligned_cols=54 Identities=22% Similarity=0.262 Sum_probs=38.3
Q ss_pred hhhhHHHHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHhhHHHHHHHHhhH
Q 018258 88 FKSEKEFLEFTLKYQQVLAERDAAMAVRDKLESLCRELQRQNKMLMDECKRVSS 141 (359)
Q Consensus 88 ~~ler~~~~~~~~~~qv~~Er~kai~~K~KLE~LCRELQkqNK~lKEE~~~~~~ 141 (359)
..|+++--.+..+..++.-..+...-.+.+||.+..-|+.++.++.+|..-..+
T Consensus 404 leleke~KnLs~k~e~Leeri~ql~qq~~eled~~K~L~~E~ekl~~e~~t~~~ 457 (1195)
T KOG4643|consen 404 LELEKEHKNLSKKHEILEERINQLLQQLAELEDLEKKLQFELEKLLEETSTVTR 457 (1195)
T ss_pred HHHHHHhHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555666677777777777777888888888888888888887764433
No 181
>PRK11020 hypothetical protein; Provisional
Probab=28.21 E-value=2.1e+02 Score=25.16 Aligned_cols=50 Identities=24% Similarity=0.295 Sum_probs=31.5
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHHH
Q 018258 270 SNEVFETFKQEIEKMAKSIKELKKENAFLKSKCEKSDFTLIELVEERERMKKQ 322 (359)
Q Consensus 270 SNevF~tFKkEMEKMsKKiKkLEKEn~~~k~K~E~sn~aLiemaeEr~~~~ke 322 (359)
..+++..|.+|+++++++|-+|---...- .-+--+.|.+|.--|...+.+
T Consensus 29 d~~~i~qf~~E~~~l~k~I~~lk~~~~~~---lske~~~l~~lpF~R~iTK~E 78 (118)
T PRK11020 29 DAEKYAQFEKEKATLEAEIARLKEVQSQK---LSKEAQKLMKLPFSRAITKKE 78 (118)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHcCCcchhccHHH
Confidence 45699999999999999998874333222 222234556665555544444
No 182
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=27.76 E-value=9.1e+02 Score=27.16 Aligned_cols=18 Identities=28% Similarity=0.518 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHhhHHH
Q 018258 181 MLRTNLKQLADQYALTEQ 198 (359)
Q Consensus 181 ~LreKLK~lieQYElRE~ 198 (359)
.|+++-+.|.+.|+.-.+
T Consensus 590 ~l~~~ae~LaeR~e~a~d 607 (717)
T PF10168_consen 590 SLRESAEKLAERYEEAKD 607 (717)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 345555555555554333
No 183
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=27.72 E-value=5.4e+02 Score=24.52 Aligned_cols=93 Identities=20% Similarity=0.287 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHH-HhhhHhHH
Q 018258 239 VSQLLATEKNLRLQLTADGEKFQQFQDALVKSNEVFETFKQ-------EIEKMAKSIKELKKENAFLKSKC-EKSDFTLI 310 (359)
Q Consensus 239 v~~l~~tE~eLr~QL~~Y~eKF~EFQdTL~KSNevF~tFKk-------EMEKMsKKiKkLEKEn~~~k~K~-E~sn~aLi 310 (359)
+..+...-..+...|+.--.-|.++.....|+-++..+||. .++.+..++++.+.--..|+... ++.+.+-.
T Consensus 71 i~~~~~erdq~~~dL~s~E~sfsdl~~ryek~K~vi~~~k~NEE~Lkk~~~ey~~~l~~~eqry~aLK~hAeekL~~ANe 150 (207)
T PF05010_consen 71 IQKLLKERDQAYADLNSLEKSFSDLHKRYEKQKEVIEGYKKNEETLKKCIEEYEERLKKEEQRYQALKAHAEEKLEKANE 150 (207)
T ss_pred HHHHHhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444455556666666666666666677777776654 55566666666666666666553 22233333
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 018258 311 ELVEERERMKKQLEKSKNQKE 331 (359)
Q Consensus 311 emaeEr~~~~ke~e~~kkq~e 331 (359)
+++.-+.....++-.++.++.
T Consensus 151 ei~~v~~~~~~e~~aLqa~lk 171 (207)
T PF05010_consen 151 EIAQVRSKHQAELLALQASLK 171 (207)
T ss_pred HHHHHHHHhHHHHHHHHHHHH
Confidence 333334444444444444333
No 184
>KOG2077 consensus JNK/SAPK-associated protein-1 [Signal transduction mechanisms]
Probab=27.50 E-value=7.3e+02 Score=27.80 Aligned_cols=130 Identities=21% Similarity=0.297 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhHHHHHHHHhhHHHHHhhHhHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHhhHHHH
Q 018258 120 SLCRELQRQNKMLMDECKRVSSEGQNLRLDLSAKFQDAIKDVSIKLEEQKDDCLSQLKENEMLRTNLKQLADQYALTEQQ 199 (359)
Q Consensus 120 ~LCRELQkqNK~lKEE~~~~~~eee~kRkelsekFq~tL~dIq~~meE~~~~~~k~~~EN~~LreKLK~lieQYElRE~h 199 (359)
++-|||.+-.+-.-||..+ +|.--.-+-|..+...+-|+..... |-++|++--..|+.||| ||.-
T Consensus 11 sIYREfErlIh~~~Ee~VK----------eLMPLVVNVLEnLD~v~~EnqEhev----ELElLrEDNEQl~tqYE-rEka 75 (832)
T KOG2077|consen 11 SIYREFERLIHCYDEEVVK----------ELMPLVVNVLENLDSVLSENQEHEV----ELELLREDNEQLITQYE-REKA 75 (832)
T ss_pred HHHHHHHHHHHhccHHHHH----------HHHHHHHHHHHHHHHHhhccchhHH----HHHHHhhhHHHHHHHHH-HHHH
Q ss_pred HHHHHhHHHHHHHHHHHhHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018258 200 YAQKLKQKTLELQIGELKIKQHEEKLVQEQS----------QMKLYAEQVSQLLATEKNLRLQLTADGEKFQQFQDA 266 (359)
Q Consensus 200 ~~k~lK~KeLE~QL~~AKleq~~e~~~~Ek~----------q~k~l~eqv~~l~~tE~eLr~QL~~Y~eKF~EFQdT 266 (359)
+..++.+|-+|. .++=..+..+.-..+.+ ..+.|.-+++.+-++|.+.+-..+...++|.++--|
T Consensus 76 lR~q~eqKfie~--eD~Le~~~kel~~k~e~~e~~~r~Lelkakn~td~asrleEre~e~k~ef~~LhqR~tem~rt 150 (832)
T KOG2077|consen 76 LRTQLEQKFIEG--EDQLESTAKELIRKEEPIELGIRPLELKAKNLTDDASRLEEREGEEKWEFQELHQRHTEMPRT 150 (832)
T ss_pred HHHHHHhhhcch--HHHHHhhHHHHHhhhcchhheeeeeccccccccchhhhhcccchHHHHHHHHHHHHhhhhhhh
No 185
>cd00179 SynN Syntaxin N-terminus domain; syntaxins are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane; they are a family of receptors for intracellular transport vesicles; each target membrane may be identified by a specific member of the syntaxin family; syntaxins contain a moderately well conserved amino-terminal domain, called Habc, whose structure is an antiparallel three-helix bundle; a linker of about 30 amino acids connects this to the carboxy-terminal region, designated H3 (t_SNARE), of the syntaxin cytoplasmic domain; the highly conserved H3 region forms a single, long alpha-helix when it is part of the core SNARE complex and anchors the protein on the cytoplasmic surface of cellular membranes; H3 is not included in defining this domain
Probab=27.49 E-value=3.9e+02 Score=22.75 Aligned_cols=109 Identities=17% Similarity=0.251 Sum_probs=60.0
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHhhHHHHHHHHhhHHHHHhhHhHHHHHHHHHHHH
Q 018258 82 KSSKRTFKSEKEFLEFTLKYQQVLAERDAAMAVRDKLESLCRELQRQNKMLMDECKRVSSEGQNLRLDLSAKFQDAIKDV 161 (359)
Q Consensus 82 ~~~k~~~~ler~~~~~~~~~~qv~~Er~kai~~K~KLE~LCRELQkqNK~lKEE~~~~~~eee~kRkelsekFq~tL~dI 161 (359)
.....+..+...+..+..-...+....+..-.++.+|+.+..+..+..+.++...+.+....... ...+.++
T Consensus 10 ~I~~~i~~i~~~v~~l~~l~~~~~t~~~~~~~~~~~l~~~~~~~~~~~~~ik~~lk~l~~~~~~~----~~~~~s~---- 81 (151)
T cd00179 10 EIRGNIDKISEDVEELQKLHSQLLTAPDADPELKQELESLVQEIKKLAKEIKGKLKELEESNEQN----EALNGSS---- 81 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----cccCCcH----
Confidence 34445555555555555555555555553445677888777777777777776655542221100 0000000
Q ss_pred HHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHH
Q 018258 162 SIKLEEQKDDCLSQLKENEMLRTNLKQLADQYALTEQQYAQKLKQK 207 (359)
Q Consensus 162 q~~meE~~~~~~k~~~EN~~LreKLK~lieQYElRE~h~~k~lK~K 207 (359)
..+.. .---..|..+|+..+..|..-+..|....+.+
T Consensus 82 --------~~r~~-~~q~~~L~~~f~~~m~~fq~~Q~~~~~~~k~~ 118 (151)
T cd00179 82 --------VDRIR-KTQHSGLSKKFVEVMTEFNKAQRKYRERYKER 118 (151)
T ss_pred --------HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00110 01122588889999999988888887655443
No 186
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=27.49 E-value=9.5e+02 Score=27.24 Aligned_cols=77 Identities=25% Similarity=0.399 Sum_probs=45.3
Q ss_pred HHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 018258 266 ALVKSNEVFETFKQEIEKMAKSIKELKKENAFLKSKCEKSDFTLIELVEERERMKKQLEKSKNQKEKLESLCRSLQAERK 345 (359)
Q Consensus 266 TL~KSNevF~tFKkEMEKMsKKiKkLEKEn~~~k~K~E~sn~aLiemaeEr~~~~ke~e~~kkq~ekLe~LCRaLQ~ER~ 345 (359)
+|.|.-.+.-+=..|+|-|---|++|+-|+..|....|-. ..+.-+.|++ +.+-++.++..-+.=-+|=|.|-.-.+
T Consensus 108 slQKqvs~Lk~sQvefE~~Khei~rl~Ee~~~l~~qlee~--~rLk~iae~q-leEALesl~~EReqk~~LrkEL~~~~~ 184 (717)
T PF09730_consen 108 SLQKQVSVLKQSQVEFEGLKHEIKRLEEEIELLNSQLEEA--ARLKEIAEKQ-LEEALESLKSEREQKNALRKELDQHLN 184 (717)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3444444444444455555556788999999999887754 3344555554 455555665555555555555555443
No 187
>PF05546 She9_MDM33: She9 / Mdm33 family; InterPro: IPR008839 Members of this family are mitochondrial inner membrane proteins with a role in inner mitochondrial membrane organisation and biogenesis []. The yeast Mdm33 protein assembles into an oligomeric complex in the inner membrane where it performs homotypic protein-protein interactions. It has been suggested that Mdm33 plays a distinct role, possibly involved in fission of the mitochondrial inner membrane [].
Probab=27.16 E-value=5.7e+02 Score=24.60 Aligned_cols=75 Identities=19% Similarity=0.330 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHHHHHHH
Q 018258 249 LRLQLTADGEKFQQFQDALVKSNEVFETFK--QEIEKMAKSIKELKKENAFLKSKCEKSDFTLIELVEERERMKKQLEKS 326 (359)
Q Consensus 249 Lr~QL~~Y~eKF~EFQdTL~KSNevF~tFK--kEMEKMsKKiKkLEKEn~~~k~K~E~sn~aLiemaeEr~~~~ke~e~~ 326 (359)
+..++..|+ +.+|.+|.-+...+..+- .+|+++-+.|-.+|......+.+.-.+..+....+..|.....++..+
T Consensus 3 ~~~~~~~~~---d~lq~~i~~as~~lNd~TGYs~Ie~LK~~i~~~E~~l~~~r~~~~~aK~~Y~~ai~~Rs~sQrEvn~L 79 (207)
T PF05546_consen 3 LSKKLSFYM---DSLQETIFTASQALNDVTGYSEIEKLKKSIEELEDELEAARQEVREAKAAYDDAIQQRSSSQREVNEL 79 (207)
T ss_pred HHHHHHHHH---HHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334555554 445566665555543332 589999999999999999999999999999999999999888887654
No 188
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=27.10 E-value=1.1e+03 Score=28.00 Aligned_cols=71 Identities=18% Similarity=0.175 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHH
Q 018258 244 ATEKNLRLQLTADGEKFQQFQDALVKSNEVFETFKQEIEKMAKSIKELKKENAFLKSKCEKSDFTLIELVE 314 (359)
Q Consensus 244 ~tE~eLr~QL~~Y~eKF~EFQdTL~KSNevF~tFKkEMEKMsKKiKkLEKEn~~~k~K~E~sn~aLiemae 314 (359)
...+=+|.++--|..-|..--..-+.--.=.++.+.+.++.--.|+.|+......+.+.+..+..+...-.
T Consensus 390 eRDkwir~ei~~l~~~i~~~ke~e~~lq~e~~~~e~~l~~~~e~i~~l~~si~e~~~r~~~~~~~~~~~k~ 460 (1200)
T KOG0964|consen 390 ERDKWIRSEIEKLKRGINDTKEQENILQKEIEDLESELKEKLEEIKELESSINETKGRMEEFDAENTELKR 460 (1200)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHH
Confidence 44555666666664443321111111111244455555555667777888877777777777666655433
No 189
>PRK09039 hypothetical protein; Validated
Probab=26.50 E-value=6.8e+02 Score=25.29 Aligned_cols=61 Identities=13% Similarity=0.217 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Q 018258 273 VFETFKQEIEKMAKSIKELKKENAFLKSKCEKSDFTLIELVEERERMKKQLEKSK-NQKEKLESLCRSL 340 (359)
Q Consensus 273 vF~tFKkEMEKMsKKiKkLEKEn~~~k~K~E~sn~aLiemaeEr~~~~ke~e~~k-kq~ekLe~LCRaL 340 (359)
--...+.+|+-+...+-.|+-+......+-......|.++- ..+.... .+...|..++..+
T Consensus 138 ~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~-------~~L~~a~~~~~~~l~~~~~~~ 199 (343)
T PRK09039 138 QVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLG-------RRLNVALAQRVQELNRYRSEF 199 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHhHHHH
Confidence 34456777777777777777777777766644444444432 2232222 2355566665555
No 190
>PLN03188 kinesin-12 family protein; Provisional
Probab=26.47 E-value=1.2e+03 Score=28.26 Aligned_cols=103 Identities=23% Similarity=0.293 Sum_probs=57.0
Q ss_pred HHHHHhh-HHHHHHHHHhHHHHHHHHHHHhHHHHHHH-----------HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Q 018258 189 LADQYAL-TEQQYAQKLKQKTLELQIGELKIKQHEEK-----------LVQEQSQMKLYAE-QVSQLLATEKNLRLQLTA 255 (359)
Q Consensus 189 lieQYEl-RE~h~~k~lK~KeLE~QL~~AKleq~~e~-----------~~~Ek~q~k~l~e-qv~~l~~tE~eLr~QL~~ 255 (359)
+++||-- -|.|++=+-+|+-...=+.+.|-..++.- +++|-.-++.-.+ ....|.++-+.|+.||-.
T Consensus 1112 ~~e~ya~l~ek~~~ll~~hr~i~egi~dvkkaaakag~kg~~~~f~~alaae~s~l~~ereker~~~~~enk~l~~qlrd 1191 (1320)
T PLN03188 1112 MLEQYADLEEKHIQLLARHRRIQEGIDDVKKAAARAGVRGAESKFINALAAEISALKVEREKERRYLRDENKSLQAQLRD 1191 (1320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhh
Confidence 5677754 44444445566665555555554433221 1222211111111 223355556778887765
Q ss_pred HHH----------HHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHH
Q 018258 256 DGE----------KFQQFQDALVKSNEVFETFKQEIEKMAKSIKEL 291 (359)
Q Consensus 256 Y~e----------KF~EFQdTL~KSNevF~tFKkEMEKMsKKiKkL 291 (359)
-.+ +|.+-+.+++=+-+-|.-..+|.++..|.|-+|
T Consensus 1192 taeav~aagellvrl~eaeea~~~a~~r~~~~eqe~~~~~k~~~kl 1237 (1320)
T PLN03188 1192 TAEAVQAAGELLVRLKEAEEALTVAQKRAMDAEQEAAEAYKQIDKL 1237 (1320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 443 566777777777777888888888877766553
No 191
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=26.28 E-value=4e+02 Score=26.66 Aligned_cols=69 Identities=14% Similarity=0.210 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018258 232 MKLYAEQVSQLLATEKNLRLQLTADGEKFQQFQDALVKSNEVFETFKQEIEKMAKSIKELKKENAFLKS 300 (359)
Q Consensus 232 ~k~l~eqv~~l~~tE~eLr~QL~~Y~eKF~EFQdTL~KSNevF~tFKkEMEKMsKKiKkLEKEn~~~k~ 300 (359)
+..+...+..+...=.....+...........+..|..++.+..++-.|-.+=+..+..++.....+-.
T Consensus 244 l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~kl~rA~~Li~~L~~E~~RW~~~~~~l~~~~~~l~G 312 (344)
T PF12777_consen 244 LAELEEKLAALQKEYEEAQKEKQELEEEIEETERKLERAEKLISGLSGEKERWSEQIEELEEQLKNLVG 312 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHhhhcchhhhHHHHHHHHHHHhcccHH
Confidence 333444444444443344444455555666677778888888888777777777777777666655543
No 192
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=26.03 E-value=7.5e+02 Score=25.56 Aligned_cols=52 Identities=19% Similarity=0.268 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018258 242 LLATEKNLRLQLTADGEKFQQFQDALVKSNEVFETFKQEIEKMAKSIKELKKENAFLKSKCE 303 (359)
Q Consensus 242 l~~tE~eLr~QL~~Y~eKF~EFQdTL~KSNevF~tFKkEMEKMsKKiKkLEKEn~~~k~K~E 303 (359)
+...|.+|+.-=...-.||+.+.. .+..|--++--+.+.||.|...+.+|--
T Consensus 350 vkekE~elke~Ekel~~kf~~lkr----------~h~eEk~kle~~rr~Leee~~~f~~rk~ 401 (406)
T KOG3859|consen 350 VKEKEAELKEAEKELHEKFDRLKR----------LHQEEKKKLEEKRKQLEEEVNAFQRRKT 401 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666666666666788887653 4556777888899999999999887743
No 193
>PF08580 KAR9: Yeast cortical protein KAR9; InterPro: IPR013889 The KAR9 protein in Saccharomyces cerevisiae (Baker's yeast) is a cytoskeletal protein required for karyogamy, correct positioning of the mitotic spindle and for orientation of cytoplasmic microtubules []. KAR9 localises at the shmoo tip in mating cells and at the tip of the growing bud in anaphase [].
Probab=25.99 E-value=4.3e+02 Score=29.51 Aligned_cols=88 Identities=18% Similarity=0.267 Sum_probs=60.9
Q ss_pred HHhHHHHHHHHHHHhhHHHHHHHHhhHHHHHhhHh-----HHHHHHHHHHHHHHHHHhhhhhhhhhHHHH------HHHH
Q 018258 115 RDKLESLCRELQRQNKMLMDECKRVSSEGQNLRLD-----LSAKFQDAIKDVSIKLEEQKDDCLSQLKEN------EMLR 183 (359)
Q Consensus 115 K~KLE~LCRELQkqNK~lKEE~~~~~~eee~kRke-----lsekFq~tL~dIq~~meE~~~~~~k~~~EN------~~Lr 183 (359)
..-...+|.+|+.....|.+....+..+-+.-|+| |..=|...+.+|+..++.... ......+. ..-.
T Consensus 230 ~~~fp~a~e~L~~r~~~L~~k~~~L~~e~~~LK~ELiedRW~~vFr~l~~q~~~m~esver-~~~kl~~~~~~~~~~~~~ 308 (683)
T PF08580_consen 230 ESIFPSACEELEDRYERLEKKWKKLEKEAESLKKELIEDRWNIVFRNLGRQAQKMCESVER-SLSKLQEAIDSGIHLDNP 308 (683)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH-HHHHhhccccccccccch
Confidence 66788999999999999999988888888887777 445599999999877774432 22222222 1234
Q ss_pred HHHHHHHHHHhhHHHHHHHH
Q 018258 184 TNLKQLADQYALTEQQYAQK 203 (359)
Q Consensus 184 eKLK~lieQYElRE~h~~k~ 203 (359)
.+|..-|+.|+..--||-.+
T Consensus 309 ~~l~~~i~s~~~k~~~~~~~ 328 (683)
T PF08580_consen 309 SKLSKQIESKEKKKSHYFPA 328 (683)
T ss_pred HHHHHHHHHHHHHHhccHHH
Confidence 56666667777666665543
No 194
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=25.88 E-value=9.3e+02 Score=26.63 Aligned_cols=186 Identities=20% Similarity=0.264 Sum_probs=94.1
Q ss_pred HHHHHhhHHHHHHHHhhHHHHHhhHhHH-HHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHH-HHhhHHHHHH
Q 018258 124 ELQRQNKMLMDECKRVSSEGQNLRLDLS-AKFQDAIKDVSIKLEEQKDDCLSQLKENEMLRTNLKQLAD-QYALTEQQYA 201 (359)
Q Consensus 124 ELQkqNK~lKEE~~~~~~eee~kRkels-ekFq~tL~dIq~~meE~~~~~~k~~~EN~~LreKLK~lie-QYElRE~h~~ 201 (359)
.|=++|-.+.+-+-. ..++..+.-|. --|.-++.+-...|....+ .-..+.+|..+|..+.. +|..-+.-
T Consensus 169 dlI~~~t~~v~~~~l--~q~~~ed~~m~k~f~dy~~~~Y~~fl~g~d~----~~~~~~Elk~~l~~~~~~i~~~ie~l-- 240 (581)
T KOG0995|consen 169 DLIRINTALVEDSPL--EQEEAEDKTMNKLFFDYTIRSYTSFLKGEDN----SSELEDELKHRLEKYFTSIANEIEDL-- 240 (581)
T ss_pred HHHHHhHHHhhccch--hccchHHHHHHHHHHHHHHHHHHHHhccCcc----cchHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 677788888776522 22344555566 4566777777777764333 23466778888887765 55432211
Q ss_pred HHHhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHH
Q 018258 202 QKLKQKTLELQIGELKIKQHEEKLVQEQSQMKLYAEQVSQLLATEKNLRLQLTADGEKFQQFQDALVKSNEVFETFKQEI 281 (359)
Q Consensus 202 k~lK~KeLE~QL~~AKleq~~e~~~~Ek~q~k~l~eqv~~l~~tE~eLr~QL~~Y~eKF~EFQdTL~KSNevF~tFKkEM 281 (359)
.-...+|+.+|..++-. ..+...+.+....+..-..-.+.-++.|..|-... -..-...+.|+
T Consensus 241 -~~~n~~l~e~i~e~ek~---------~~~~eslre~~~~L~~D~nK~~~y~~~~~~k~~~~-------~~~l~~l~~Ei 303 (581)
T KOG0995|consen 241 -KKTNRELEEMINEREKD---------PGKEESLREKKARLQDDVNKFQAYVSQMKSKKQHM-------EKKLEMLKSEI 303 (581)
T ss_pred -HHHHHHHHHHHHHHhcC---------cchHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHH-------HHHHHHHHHHH
Confidence 01223455544422111 11111222222222222222222222222222222 22334455677
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHhH---HHHHHHHHHHHHHHHHHHHHHHHHH
Q 018258 282 EKMAKSIKELKKENAFLKSKCEKSDFTL---IELVEERERMKKQLEKSKNQKEKLE 334 (359)
Q Consensus 282 EKMsKKiKkLEKEn~~~k~K~E~sn~aL---iemaeEr~~~~ke~e~~kkq~ekLe 334 (359)
+..--.+.+|-+++..|+...+.-+-.. =.|-.||..+...+.....+++.|.
T Consensus 304 e~kEeE~e~lq~~~d~Lk~~Ie~Q~iS~~dve~mn~Er~~l~r~l~~i~~~~d~l~ 359 (581)
T KOG0995|consen 304 EEKEEEIEKLQKENDELKKQIELQGISGEDVERMNLERNKLKRELNKIQSELDRLS 359 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777777777777766544333 3466777777777665555544443
No 195
>PTZ00419 valyl-tRNA synthetase-like protein; Provisional
Probab=25.85 E-value=3e+02 Score=31.73 Aligned_cols=30 Identities=23% Similarity=0.334 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 018258 277 FKQEIEKMAKSIKELKKENAFLKSKCEKSD 306 (359)
Q Consensus 277 FKkEMEKMsKKiKkLEKEn~~~k~K~E~sn 306 (359)
+..|++++.|++.+|+++......|..+-+
T Consensus 927 ~~~E~~rL~K~l~kl~~ei~~~~~kL~N~~ 956 (995)
T PTZ00419 927 LKKELAKLEKKLAKLQKSLESYLKKISIPN 956 (995)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCch
Confidence 689999999999999999999999875433
No 196
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=25.71 E-value=8.7e+02 Score=26.23 Aligned_cols=101 Identities=14% Similarity=0.180 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHHH---
Q 018258 247 KNLRLQLTADGEKFQQFQD-ALVKSNEVFETFKQEIEKMAKSIKELKKENAFLKSKCEKSDFTLIELVEERERMKKQ--- 322 (359)
Q Consensus 247 ~eLr~QL~~Y~eKF~EFQd-TL~KSNevF~tFKkEMEKMsKKiKkLEKEn~~~k~K~E~sn~aLiemaeEr~~~~ke--- 322 (359)
..|-.|-.+|...+.++.. -|.+=+.-|....+|.....-...-+|++....-+|.-+.+..+-+.+.+.....+.
T Consensus 328 sqleSqr~y~e~~~~e~~qsqlen~k~~~e~~~~e~~~l~~~~~~~e~~kk~~e~k~~q~q~k~~k~~kel~~~~E~n~~ 407 (493)
T KOG0804|consen 328 SQLESQRKYYEQIMSEYEQSQLENQKQYYELLITEADSLKQESSDLEAEKKIVERKLQQLQTKLKKCQKELKEEREENKK 407 (493)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred --------HHHHHHHHHHHHHHHHHHHHHhhcC
Q 018258 323 --------LEKSKNQKEKLESLCRSLQAERKQN 347 (359)
Q Consensus 323 --------~e~~kkq~ekLe~LCRaLQ~ER~~~ 347 (359)
...+++..+.+...|++++.+-+.+
T Consensus 408 l~knq~vw~~kl~~~~e~~~~~~~s~d~~I~dL 440 (493)
T KOG0804|consen 408 LIKNQDVWRGKLKELEEREKEALGSKDEKITDL 440 (493)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 197
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=24.73 E-value=1.2e+03 Score=27.69 Aligned_cols=105 Identities=15% Similarity=0.168 Sum_probs=73.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHH
Q 018258 242 LLATEKNLRLQLTADGEKFQQFQDALVKSNEVFETFKQEIEKMAKSIKELKKENAFLKSKCEKSDFTLIELVEERERMKK 321 (359)
Q Consensus 242 l~~tE~eLr~QL~~Y~eKF~EFQdTL~KSNevF~tFKkEMEKMsKKiKkLEKEn~~~k~K~E~sn~aLiemaeEr~~~~k 321 (359)
...+-..+..++..|..........+.+.-.--...-.++....++++.+-++...+-..|++|-...-.+--+|..+..
T Consensus 834 ~k~~l~~~~~~~~~l~~e~~~l~~kv~~~~~~~~~~~~el~~~k~k~~~~dt~i~~~~~~~e~~~~e~~~~~l~~kkle~ 913 (1174)
T KOG0933|consen 834 LKQQLEQLEKQISSLKSELGNLEAKVDKVEKDVKKAQAELKDQKAKQRDIDTEISGLLTSQEKCLSEKSDGELERKKLEH 913 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHhhhHHHhhhhhHHHHHHHHhhcccchHHHHHh
Confidence 33444556666666766666666666666666666777888888888888888888888888888888777777777777
Q ss_pred HHHH-------HHHHHHHHHHHHHHHHHHhhc
Q 018258 322 QLEK-------SKNQKEKLESLCRSLQAERKQ 346 (359)
Q Consensus 322 e~e~-------~kkq~ekLe~LCRaLQ~ER~~ 346 (359)
++.. ..+.+++|.+=.--|-.|+..
T Consensus 914 e~~~~~~e~~~~~k~v~~l~~k~~wi~~ek~~ 945 (1174)
T KOG0933|consen 914 EVTKLESEKANARKEVEKLLKKHEWIGDEKRL 945 (1174)
T ss_pred HHHHhhhhHHHHHHHHHHHHHhccchhHHHHh
Confidence 7654 455666666655556666544
No 198
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=24.60 E-value=7.6e+02 Score=25.18 Aligned_cols=69 Identities=23% Similarity=0.426 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHhhhHhH--------------HHHHHHHHHHHHHHHHHH
Q 018258 276 TFKQEIEKMAKSIKELKK--------------ENAFLKSKCEKSDFTL--------------IELVEERERMKKQLEKSK 327 (359)
Q Consensus 276 tFKkEMEKMsKKiKkLEK--------------En~~~k~K~E~sn~aL--------------iemaeEr~~~~ke~e~~k 327 (359)
.+=..+|++.+++..||. |...++-|++..|..| ..++.|+--+.+.+..+.
T Consensus 130 ~lV~qLEk~~~q~~qLe~d~qs~lDEkeEl~~ERD~yk~K~~RLN~ELn~~L~g~~~rivDIDaLi~ENRyL~erl~q~q 209 (319)
T PF09789_consen 130 DLVEQLEKLREQIEQLERDLQSLLDEKEELVTERDAYKCKAHRLNHELNYILNGDENRIVDIDALIMENRYLKERLKQLQ 209 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHHHHHHHH
Confidence 344455666666666554 4556677888777765 455777777777776665
Q ss_pred HHHH----HHHHHHHHHHHHh
Q 018258 328 NQKE----KLESLCRSLQAER 344 (359)
Q Consensus 328 kq~e----kLe~LCRaLQ~ER 344 (359)
...+ .|-+-=++|-.-|
T Consensus 210 eE~~l~k~~i~KYK~~le~k~ 230 (319)
T PF09789_consen 210 EEKELLKQTINKYKSALERKR 230 (319)
T ss_pred HHHHHHHHHHHHHHHHHHhhc
Confidence 5444 4445555666533
No 199
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=24.52 E-value=4.6e+02 Score=22.64 Aligned_cols=46 Identities=24% Similarity=0.325 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018258 289 KELKKENAFLKSKCEKSDFTLIELVEERERMKKQLEKSKNQKEKLE 334 (359)
Q Consensus 289 KkLEKEn~~~k~K~E~sn~aLiemaeEr~~~~ke~e~~kkq~ekLe 334 (359)
..||.....+-.........+.++++|++.+.-+-+.++..+..++
T Consensus 11 ~~le~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~~~ 56 (110)
T PRK13169 11 DDLEQNLGVLLKELGALKKQLAELLEENTALRLENDKLRERLEELE 56 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3455555566666666667789999999988888888777776653
No 200
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=24.42 E-value=5.9e+02 Score=23.84 Aligned_cols=65 Identities=23% Similarity=0.417 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHH---HHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHhHHHHHH
Q 018258 152 AKFQDAIKDVSIKLEEQKDDCLSQLKENEMLR---TNLKQLADQYALTEQQYAQKLKQKTLELQIGELKIKQHEE 223 (359)
Q Consensus 152 ekFq~tL~dIq~~meE~~~~~~k~~~EN~~Lr---eKLK~lieQYElRE~h~~k~lK~KeLE~QL~~AKleq~~e 223 (359)
..+++.|.|++..+++-. .||..|+ -+-..-+..|+-.+-.+..++....-|+.-...+|-..+.
T Consensus 15 ~~L~n~l~elq~~l~~l~-------~ENk~Lk~lq~Rq~kAL~k~e~~e~~Lpqll~~h~eEvr~Lr~~LR~~q~ 82 (194)
T PF15619_consen 15 KELQNELAELQRKLQELR-------KENKTLKQLQKRQEKALQKYEDTEAELPQLLQRHNEEVRVLRERLRKSQE 82 (194)
T ss_pred HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777777776544 4555433 4555567999999999999888888887666665554433
No 201
>PF02050 FliJ: Flagellar FliJ protein; InterPro: IPR012823 Many flagellar proteins are exported by a flagellum-specific export pathway. Attempts have been made to characterise the apparatus responsible for this process, by designing assays to screen for mutants with export defects []. Experiments involving filament removal from temperature-sensitive flagellar mutants of Salmonella typhimurium have shown that, while most mutants were able to regrow filaments, flhA, fliH, fliI and fliN mutants showed no or greatly reduced regrowth. This suggests that the corresponding gene products are involved in the process of flagellum-specific export. The sequences of fliH, fliI and the adjacent gene, fliJ, have been deduced. FliJ was shown to encode a protein of molecular mass 17,302 Da []. It is a membrane-associated protein that affects chemotactic events, mutations in FliJ result in failure to respond to chemotactic stimuli.; GO: 0003774 motor activity, 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009288 bacterial-type flagellum, 0016020 membrane, 0044461 bacterial-type flagellum part; PDB: 3AJW_A.
Probab=24.30 E-value=3.5e+02 Score=21.23 Aligned_cols=79 Identities=19% Similarity=0.234 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHHHH
Q 018258 244 ATEKNLRLQLTADGEKFQQFQDALVKSNEVFETFKQEIEKMAKSIKELKKENAFLKSKCEKSDFTLIELVEERERMKKQL 323 (359)
Q Consensus 244 ~tE~eLr~QL~~Y~eKF~EFQdTL~KSNevF~tFKkEMEKMsKKiKkLEKEn~~~k~K~E~sn~aLiemaeEr~~~~ke~ 323 (359)
..-..|...+..|...|..-. . .=|..-|..|..-+..+...|..+..+...+....+.+...+....-++..++.-.
T Consensus 19 ~~l~~L~~~~~~~~~~~~~~~-~-~~s~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~r~~l~~a~~~~k~~e~L~ 96 (123)
T PF02050_consen 19 EQLEQLQQERQEYQEQLSESQ-Q-GVSVAQLRNYQRYISALEQAIQQQQQELERLEQEVEQAREELQEARRERKKLEKLK 96 (123)
T ss_dssp HHHHHHHHHHHHHHHT------S-GGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhcc-C-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333455556666665555544 3 44557788888888888888888888888888888888888888777766555544
Q ss_pred H
Q 018258 324 E 324 (359)
Q Consensus 324 e 324 (359)
+
T Consensus 97 e 97 (123)
T PF02050_consen 97 E 97 (123)
T ss_dssp H
T ss_pred H
Confidence 4
No 202
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=24.30 E-value=9.3e+02 Score=26.07 Aligned_cols=86 Identities=20% Similarity=0.246 Sum_probs=55.2
Q ss_pred HHHHHHHHHhhHHHHHHHHhhHHHHHhhHhHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHhhHHHH
Q 018258 120 SLCRELQRQNKMLMDECKRVSSEGQNLRLDLSAKFQDAIKDVSIKLEEQKDDCLSQLKENEMLRTNLKQLADQYALTEQQ 199 (359)
Q Consensus 120 ~LCRELQkqNK~lKEE~~~~~~eee~kRkelsekFq~tL~dIq~~meE~~~~~~k~~~EN~~LreKLK~lieQYElRE~h 199 (359)
.+|==-=+||+..|+-..++.+.-+.- .....+|.|+|..++....+...-.-|--.|..+|+.--.=-++||--
T Consensus 228 ~gcw~ay~Qnk~akehv~km~kdle~L-----q~aEqsl~dlQk~Lekar~e~rnvavek~~lerkl~ea~rl~elreg~ 302 (575)
T KOG4403|consen 228 GGCWFAYRQNKKAKEHVNKMMKDLEGL-----QRAEQSLEDLQKRLEKAREEQRNVAVEKLDLERKLDEAPRLSELREGV 302 (575)
T ss_pred hhhhhhhhhhhHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHhhhhhhhhhhcch
Confidence 456666788998888877776664331 334567888888887554443222334456777777666666677766
Q ss_pred HHHHHhHHHHHH
Q 018258 200 YAQKLKQKTLEL 211 (359)
Q Consensus 200 ~~k~lK~KeLE~ 211 (359)
-....+ |+||.
T Consensus 303 e~e~~r-kelE~ 313 (575)
T KOG4403|consen 303 ENETSR-KELEQ 313 (575)
T ss_pred hHHHHH-HHHHH
Confidence 666666 56665
No 203
>PF09432 THP2: Tho complex subunit THP2; InterPro: IPR018557 The THO complex plays a role in coupling transcription elongation to mRNA export. It is composed of subunits THP2, HPR1, THO2 and MFT1 [].
Probab=24.09 E-value=2.7e+02 Score=25.04 Aligned_cols=52 Identities=17% Similarity=0.325 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhhhHhH
Q 018258 246 EKNLRLQLTADGEKFQQFQDALVKSNEVFETFKQEIEK---MAKSIKELKKENAFLKSKCEKSDFTL 309 (359)
Q Consensus 246 E~eLr~QL~~Y~eKF~EFQdTL~KSNevF~tFKkEMEK---MsKKiKkLEKEn~~~k~K~E~sn~aL 309 (359)
=..||.||.-|.+..+=-- -|==+|. +.-..+.|.||...|+..|+..--.+
T Consensus 54 ~~~lr~~L~~YLD~IKm~R------------AkY~lENky~L~~tL~~LtkEVn~Wr~ewd~iE~~m 108 (132)
T PF09432_consen 54 TEELRAQLDRYLDDIKMER------------AKYSLENKYSLQDTLNQLTKEVNYWRKEWDNIEMLM 108 (132)
T ss_pred HHHHHHHHHHHHHHHHHHH------------HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3578888888887665211 1111221 24567889999999999999765444
No 204
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=23.90 E-value=3.5e+02 Score=21.02 Aligned_cols=49 Identities=20% Similarity=0.277 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 018258 285 AKSIKELKKENAFLKSKCEKSDFTLIELVEERERMKKQLEKSKNQKEKLESLCRSLQAERKQN 347 (359)
Q Consensus 285 sKKiKkLEKEn~~~k~K~E~sn~aLiemaeEr~~~~ke~e~~kkq~ekLe~LCRaLQ~ER~~~ 347 (359)
..+|-.||--....-.-.+..|..+. ...++|++|+..|+.|...-..+
T Consensus 3 e~Ri~~LE~~la~qe~~ie~Ln~~v~--------------~Qq~~I~~L~~~l~~L~~rl~~~ 51 (69)
T PF04102_consen 3 EERIEELEIKLAFQEDTIEELNDVVT--------------EQQRQIDRLQRQLRLLRERLREL 51 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHT----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHh
Confidence 34555555555555444455554444 35556666776677666664443
No 205
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=23.81 E-value=6.3e+02 Score=23.95 Aligned_cols=11 Identities=0% Similarity=-0.046 Sum_probs=4.1
Q ss_pred HHHHHHHHHHH
Q 018258 246 EKNLRLQLTAD 256 (359)
Q Consensus 246 E~eLr~QL~~Y 256 (359)
....+..++.+
T Consensus 37 ~~~sQ~~id~~ 47 (251)
T PF11932_consen 37 AQQSQKRIDQW 47 (251)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 206
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=23.80 E-value=1.4e+03 Score=27.88 Aligned_cols=26 Identities=12% Similarity=0.026 Sum_probs=16.9
Q ss_pred HHHhhHhHHHHHHHHHHHHHHHHHhh
Q 018258 143 GQNLRLDLSAKFQDAIKDVSIKLEEQ 168 (359)
Q Consensus 143 ee~kRkelsekFq~tL~dIq~~meE~ 168 (359)
...+++++.+.|+....+....+++.
T Consensus 897 ~~s~~~e~~~~~~~~~~~l~e~~s~~ 922 (1294)
T KOG0962|consen 897 LDSKVKELLERIQPLKVELEEAQSEK 922 (1294)
T ss_pred HHHHHHhhHhhhcchhhhHHHHHHHH
Confidence 45567778888887766655555433
No 207
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=23.42 E-value=3.8e+02 Score=21.23 Aligned_cols=44 Identities=23% Similarity=0.240 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHhhHHHHHHHHhhHHHHHhhHhHHHHHHHHHHHHHHHH
Q 018258 118 LESLCRELQRQNKMLMDECKRVSSEGQNLRLDLSAKFQDAIKDVSIKL 165 (359)
Q Consensus 118 LE~LCRELQkqNK~lKEE~~~~~~eee~kRkelsekFq~tL~dIq~~m 165 (359)
|=.+|.+|..+|..+..+... ...-|..+.++-..+-..|.+-|
T Consensus 12 Li~~~~~L~~EN~~Lr~q~~~----~~~ER~~L~ekne~Ar~rvEamI 55 (65)
T TIGR02449 12 LLEYLERLKSENRLLRAQEKT----WREERAQLLEKNEQARQKVEAMI 55 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 345699999999999888543 44455556666555555444433
No 208
>KOG0244 consensus Kinesin-like protein [Cytoskeleton]
Probab=23.15 E-value=1.2e+03 Score=27.13 Aligned_cols=186 Identities=21% Similarity=0.255 Sum_probs=99.5
Q ss_pred HHHHHHhHHHHHHHHHHHhhHH--HHHHHHhhHHHHHhhHhHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHH
Q 018258 111 AMAVRDKLESLCRELQRQNKML--MDECKRVSSEGQNLRLDLSAKFQDAIKDVSIKLEEQKDDCLSQLKENEMLRTNLKQ 188 (359)
Q Consensus 111 ai~~K~KLE~LCRELQkqNK~l--KEE~~~~~~eee~kRkelsekFq~tL~dIq~~meE~~~~~~k~~~EN~~LreKLK~ 188 (359)
.+..-.+..+|.+||-.-++.| |+...++...++..-..+.++|+..+......+-+-. .|-..|+..|..
T Consensus 462 ~~~~~~~q~~ls~el~el~k~l~~Ke~l~rr~~~~~~~~~~~~~~~e~~~~~le~e~~~le-------~E~~~l~~el~~ 534 (913)
T KOG0244|consen 462 TIGHPQKQGSLSGELSELEKRLAEKEPLTRRKAYEKAEKSKAKEQYESDSGTLEAEKSPLE-------SERSRLRNELNV 534 (913)
T ss_pred CccchHHHhhhhHHHHHHHhhhccccHHHHHHHHhhhhhhHHHHHHhhhhhhHHHHhcccc-------cccHHHHHHHHh
Confidence 3555666677777777776665 3444444433333334455666666554444333322 344456666666
Q ss_pred HHH-HHhhHHHHHHHHHhHHHHHHHHHHHhHHHHH-HHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018258 189 LAD-QYALTEQQYAQKLKQKTLELQIGELKIKQHE-EKLVQEQSQ----MKLYAEQVSQLLATEKNLRLQLTADGEKFQQ 262 (359)
Q Consensus 189 lie-QYElRE~h~~k~lK~KeLE~QL~~AKleq~~-e~~~~Ek~q----~k~l~eqv~~l~~tE~eLr~QL~~Y~eKF~E 262 (359)
|-. .|-+++.+.. +=++||.|+...+-..-. .+...-+.. ..-+...+..+...-..|--......++|..
T Consensus 535 ~~~~~~kl~eer~q---klk~le~q~s~lkk~l~~~~~l~~~~~~~~~~~~kl~~ei~~~k~~kv~l~~~~~~d~ekfr~ 611 (913)
T KOG0244|consen 535 FNRLAAKLGEERVQ---KLKSLETQISLLKKKLSSQRKLIKPKPKSEGIRAKLLQEIHIAKGQKVQLLRVMKEDAEKFRQ 611 (913)
T ss_pred hhHHHHHhhhHHHH---HHHHHHHHHHHHHHhhHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 655 6666666544 456788877655432211 111111111 1123344555555556666677777888888
Q ss_pred HHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHHH
Q 018258 263 FQDALVKSNEVFETFKQEIEKMAKSIKELKKENAFLKSKCEKSDFTLIELVEER 316 (359)
Q Consensus 263 FQdTL~KSNevF~tFKkEMEKMsKKiKkLEKEn~~~k~K~E~sn~aLiemaeEr 316 (359)
+.+.-- +|+.-|.++-++-+-+...+...+...+..|.--.+|.
T Consensus 612 ~K~~~~----------Ke~~qlk~~~rk~~~~~~~~~~l~~~q~~vl~~kt~ea 655 (913)
T KOG0244|consen 612 WKDRTE----------KEWNQLKGQERKSEGEHPKLEVLVKKQNYVLQRKTEEA 655 (913)
T ss_pred HHHHHH----------HHHHHHhccchhhccchhHHHHHHHHHHHHHHHHHHHH
Confidence 776443 35555666666655555555555555555554444443
No 209
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=23.11 E-value=5.7e+02 Score=25.49 Aligned_cols=81 Identities=21% Similarity=0.247 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHHHH
Q 018258 238 QVSQLLATEKNLRLQLTADGEKFQQFQDALVKSNEVFETFKQEIEKMAKSIKELKKENAFLKSKCEKSDFTLIELVEERE 317 (359)
Q Consensus 238 qv~~l~~tE~eLr~QL~~Y~eKF~EFQdTL~KSNevF~tFKkEMEKMsKKiKkLEKEn~~~k~K~E~sn~aLiemaeEr~ 317 (359)
++.-|+.+|+-+|-.|.--+.--. .-+.-|.=|++|--.|+.|+.||..|...++....---.++.+..
T Consensus 60 RL~HLS~EEK~~RrKLKNRVAAQt-----------aRDrKKaRm~eme~~i~dL~een~~L~~en~~Lr~~n~~L~~~n~ 128 (292)
T KOG4005|consen 60 RLDHLSWEEKVQRRKLKNRVAAQT-----------ARDRKKARMEEMEYEIKDLTEENEILQNENDSLRAINESLLAKNH 128 (292)
T ss_pred hhcccCHHHHHHHHHHHHHHHHhh-----------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 444455566666555543332111 122345568888899999999999998888766554444555666
Q ss_pred HHHHHHHHHHHH
Q 018258 318 RMKKQLEKSKNQ 329 (359)
Q Consensus 318 ~~~ke~e~~kkq 329 (359)
.+...++.++.-
T Consensus 129 el~~~le~~~~~ 140 (292)
T KOG4005|consen 129 ELDSELELLRQE 140 (292)
T ss_pred HHHHHHHHHHHH
Confidence 666666654443
No 210
>PF06632 XRCC4: DNA double-strand break repair and V(D)J recombination protein XRCC4; InterPro: IPR010585 This entry represents the DNA double-strand break repair and V(D)J recombination protein XRCC4, which is found in certain Metazoans, fungi and plants. XRCC4 binds to DNA, and to DNA ligase IV (LIG4) to form the LIG4-XRCC4 complex []. The LIG4-XRCC4 complex is responsible for the ligation step in the non-homologous end joining (NHEJ) pathway of DNA double-strand break repair. XRCC4 enhances the joining activity of LIG4. It is thought that XRCC4 and LIG4 are essential for alignment-based gap filling, as well as for final ligation of the breaks []. Binding of the LIG4-XRCC4 complex to DNA ends is dependent on the assembly of the DNA-dependent protein kinase complex DNA-PK to these DNA ends. ; GO: 0003677 DNA binding, 0006302 double-strand break repair, 0006310 DNA recombination, 0005634 nucleus; PDB: 3RWR_R 1IK9_B 3SR2_E 3Q4F_H 3II6_B 1FU1_A 3MUD_B.
Probab=23.06 E-value=8.3e+02 Score=25.03 Aligned_cols=64 Identities=25% Similarity=0.291 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHH
Q 018258 280 EIEKMAKSIKELKKENAFLKSKCEKSDFTLIELVEERERMKKQLE--------KSKNQKEKLESLCRSLQAE 343 (359)
Q Consensus 280 EMEKMsKKiKkLEKEn~~~k~K~E~sn~aLiemaeEr~~~~ke~e--------~~kkq~ekLe~LCRaLQ~E 343 (359)
-+....-.+-.|.++|..|+.-|..+...|-+.+.++..++.++- ..+.||..|..+...++..
T Consensus 138 ~~~~l~~~~~~L~~enerL~~e~~~~~~qlE~~v~~K~~~E~~L~~KF~~vLNeKK~KIR~lq~~L~~~~~~ 209 (342)
T PF06632_consen 138 ANSRLQAENEHLQKENERLESEANKLLKQLEKFVNAKEEHEEDLYAKFVLVLNEKKAKIRELQRLLASAKEE 209 (342)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhcc
Confidence 344444455556666666777777777777777776666666542 2344555555556655553
No 211
>PRK02793 phi X174 lysis protein; Provisional
Probab=22.77 E-value=3.9e+02 Score=21.13 Aligned_cols=51 Identities=22% Similarity=0.256 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 018258 284 MAKSIKELKKENAFLKSKCEKSDFTLIELVEERERMKKQLEKSKNQKEKLESLCRSLQAERKQNS 348 (359)
Q Consensus 284 MsKKiKkLEKEn~~~k~K~E~sn~aLiemaeEr~~~~ke~e~~kkq~ekLe~LCRaLQ~ER~~~~ 348 (359)
|..+|-.||--....-.-.+..|..+. ...++|+.|...|+.|-..-....
T Consensus 6 ~e~Ri~~LE~~lafQe~tIe~Ln~~v~--------------~Qq~~I~~L~~~l~~L~~rl~~~~ 56 (72)
T PRK02793 6 LEARLAELESRLAFQEITIEELNVTVT--------------AHEMEMAKLRDHLRLLTEKLKASQ 56 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHhhc
Confidence 455666676666555555555555554 355667777777777766544443
No 212
>PLN02943 aminoacyl-tRNA ligase
Probab=22.71 E-value=2.9e+02 Score=31.84 Aligned_cols=29 Identities=17% Similarity=0.409 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 018258 277 FKQEIEKMAKSIKELKKENAFLKSKCEKS 305 (359)
Q Consensus 277 FKkEMEKMsKKiKkLEKEn~~~k~K~E~s 305 (359)
+..|.+++.|++.+|+++...+..|..+-
T Consensus 887 ~~~E~~rL~K~l~klekei~~~~~kLsN~ 915 (958)
T PLN02943 887 ISAEVERLSKRLSKMQTEYDALAARLSSP 915 (958)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 78999999999999999999999986443
No 213
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=22.67 E-value=9.4e+02 Score=25.56 Aligned_cols=24 Identities=17% Similarity=0.342 Sum_probs=15.2
Q ss_pred HHHHhHHHHHHHHHHHhhHHHHHH
Q 018258 113 AVRDKLESLCRELQRQNKMLMDEC 136 (359)
Q Consensus 113 ~~K~KLE~LCRELQkqNK~lKEE~ 136 (359)
.++.++..|..+|...+....++.
T Consensus 255 ~a~~~i~~L~~~l~~l~~~~~~~l 278 (582)
T PF09731_consen 255 HAKERIDALQKELAELKEEEEEEL 278 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 557777777777776555554443
No 214
>PRK14900 valS valyl-tRNA synthetase; Provisional
Probab=22.40 E-value=2.9e+02 Score=32.21 Aligned_cols=60 Identities=23% Similarity=0.375 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018258 277 FKQEIEKMAKSIKELKKENAFLKSKCEKSDF------TLIELVEERERMKKQLEKSKNQKEKLESLCRSLQA 342 (359)
Q Consensus 277 FKkEMEKMsKKiKkLEKEn~~~k~K~E~sn~------aLiemaeEr~~~~ke~e~~kkq~ekLe~LCRaLQ~ 342 (359)
+..|.+++.+.+.+|+|+...+..+..+.+. .+++.+.++ ++..+.++..|+..+-.|..
T Consensus 840 ~~~e~~rLekel~kl~Kel~kl~~~L~n~~f~~kap~~~veka~~k------l~~~~~~l~~le~~l~~L~~ 905 (1052)
T PRK14900 840 LAAETARVDKEIGKVDQDLAVLERKLQNPSFVQNAPPAVVEKDRAR------AEELREKRGKLEAHRAMLSG 905 (1052)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHhcCchhhhcCCHHHHHHHHHH------HHHHHHHHHHHHHHHHHHhc
Confidence 7799999999999999999999998776665 555544433 23444455555555555543
No 215
>PTZ00464 SNF-7-like protein; Provisional
Probab=22.05 E-value=6.9e+02 Score=23.76 Aligned_cols=28 Identities=11% Similarity=0.172 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018258 314 EERERMKKQLEKSKNQKEKLESLCRSLQ 341 (359)
Q Consensus 314 eEr~~~~ke~e~~kkq~ekLe~LCRaLQ 341 (359)
..+-....+++.+..++..|+.+.-+++
T Consensus 68 K~KK~~E~ql~~l~~q~~nleq~~~~ie 95 (211)
T PTZ00464 68 QQKRMYQNQQDMMMQQQFNMDQLQFTTE 95 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555555555555555444
No 216
>PLN02381 valyl-tRNA synthetase
Probab=21.79 E-value=3.1e+02 Score=32.09 Aligned_cols=30 Identities=27% Similarity=0.430 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 018258 277 FKQEIEKMAKSIKELKKENAFLKSKCEKSD 306 (359)
Q Consensus 277 FKkEMEKMsKKiKkLEKEn~~~k~K~E~sn 306 (359)
+..|.+++.|++.+|+++...+..|..+.+
T Consensus 995 ~~~E~~rL~K~l~klekei~~~~~kLsN~~ 1024 (1066)
T PLN02381 995 AEAELEKLRNKMDEIQKQQEKLEKKMNASG 1024 (1066)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcCCc
Confidence 689999999999999999999998875544
No 217
>TIGR01808 CM_M_hiGC-arch monofunctional chorismate mutase, high GC gram positive type. This model represents the monofunctional chorismate mutase from high GC gram-positive bacteria and archaea. Trusted annotations from Corynebacterium and Pyrococcus are aparrently the sole chorismate mutase enzymes in their respective genomes. This is coupled with the presence in those genomes of the enzymes of the chorismate pathways both up- and downstream of chorismate mutase.
Probab=21.04 E-value=2.3e+02 Score=22.31 Aligned_cols=35 Identities=17% Similarity=0.359 Sum_probs=30.1
Q ss_pred HHHHHHHHHhhhHhHHHHHHHHHHHHHHHHHHHHH
Q 018258 295 NAFLKSKCEKSDFTLIELVEERERMKKQLEKSKNQ 329 (359)
Q Consensus 295 n~~~k~K~E~sn~aLiemaeEr~~~~ke~e~~kkq 329 (359)
...|+...+..|..|+++..+|...-.++..+++.
T Consensus 2 l~~lR~~ID~ID~~ii~LL~~R~~~~~~i~~~K~~ 36 (74)
T TIGR01808 2 IDTLREEIDRLDAEILALVKRRAEISQAIGKARMA 36 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35688899999999999999999999998877765
No 218
>COG3096 MukB Uncharacterized protein involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=20.99 E-value=1.4e+03 Score=26.83 Aligned_cols=49 Identities=14% Similarity=0.388 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018258 246 EKNLRLQLTADGEKFQQFQDALVKSNEVFETFKQEIEKMAKSIKELKKENAFLKSK 301 (359)
Q Consensus 246 E~eLr~QL~~Y~eKF~EFQdTL~KSNevF~tFKkEMEKMsKKiKkLEKEn~~~k~K 301 (359)
-.+|..+|..--.+-.++..+| +..--||+.+.++|+++|++-..++.-
T Consensus 1061 RDELh~~Lst~RsRr~~~Ekql-------T~~E~E~~~L~~~~rK~ErDY~~~Re~ 1109 (1480)
T COG3096 1061 RDELHAQLSTNRSRRNQLEKQL-------TFCEAEMDNLTRKLRKLERDYFEMREQ 1109 (1480)
T ss_pred HHHHHHHHhccHhHHHHHHHHH-------HHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 3444445544333333333332 344579999999999999998777544
No 219
>PF14988 DUF4515: Domain of unknown function (DUF4515)
Probab=20.70 E-value=7.2e+02 Score=23.46 Aligned_cols=69 Identities=22% Similarity=0.277 Sum_probs=49.5
Q ss_pred HHHhhHHHHHHHHhhHHHHHhhHhHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 018258 126 QRQNKMLMDECKRVSSEGQNLRLDLSAKFQDAIKDVSIKLEEQKDDCLSQLKENEMLRTNLKQLADQYALTEQQYA 201 (359)
Q Consensus 126 QkqNK~lKEE~~~~~~eee~kRkelsekFq~tL~dIq~~meE~~~~~~k~~~EN~~LreKLK~lieQYElRE~h~~ 201 (359)
+...-.|.+.+.....+-+..|.++.+.|..-+++++..+-+.. .+...|+..|+.+-+-+..++.+-.
T Consensus 17 ~~~i~~L~~q~~~~~~~i~~~r~~l~s~y~~q~~~Lq~qLlq~~-------k~~~~l~~eLq~l~~~~~~k~~qe~ 85 (206)
T PF14988_consen 17 EKKIEKLWKQYIQQLEEIQRERQELVSRYAKQTSELQDQLLQKE-------KEQAKLQQELQALKEFRRLKEQQER 85 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 33444555565665666677788899999999999998887543 3566788888888888777766543
No 220
>PF06428 Sec2p: GDP/GTP exchange factor Sec2p; InterPro: IPR009449 In Saccharomyces cerevisiae, Sec2p is a GDP/GTP exchange factor for Sec4p, which is required for vesicular transport at the post-Golgi stage of yeast secretion []. It catalyzes the dissociation of GDP from SEC4 and also potently promoting binding of GTP. Activation of SEC4 by SEC2 is needed for the directed transport of vesicles to sites of exocytosis. Binds the Rab GTPase YPT32, but does not have exhange activity on YPT32 [, , ].; PDB: 2EQB_C 2E7S_K 2OCY_A.
Probab=20.57 E-value=1.3e+02 Score=25.47 Aligned_cols=65 Identities=22% Similarity=0.262 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018258 280 EIEKMAKSIKELKKENAFLKSK-CEKSDFTLIELVEERERMKKQLEKSKNQKEKLESLCRSLQAER 344 (359)
Q Consensus 280 EMEKMsKKiKkLEKEn~~~k~K-~E~sn~aLiemaeEr~~~~ke~e~~kkq~ekLe~LCRaLQ~ER 344 (359)
.-..+......++.|...|... |+.+|..+..--.++..+......+.+++.-.+.+...||.+-
T Consensus 9 ~r~~ae~~~~~ie~ElEeLTasLFeEAN~MVa~ar~e~~~~e~k~~~le~~l~e~~~~l~~lq~qL 74 (100)
T PF06428_consen 9 RREEAEQEKEQIESELEELTASLFEEANKMVADARRERAALEEKNEQLEKQLKEKEALLESLQAQL 74 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTHHCHCCCHCTSSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666777778888888666 5888888877666677777777777777777777777777663
No 221
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=20.52 E-value=1.1e+03 Score=25.44 Aligned_cols=57 Identities=12% Similarity=0.390 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018258 247 KNLRLQLTADGEKFQQFQDALVKSNEVFETFKQEIEKMAKSIKELKKENAFLKSKCE 303 (359)
Q Consensus 247 ~eLr~QL~~Y~eKF~EFQdTL~KSNevF~tFKkEMEKMsKKiKkLEKEn~~~k~K~E 303 (359)
..+..||..-...|..+...+....-+|.....+++.+.+.+..++++-..+.....
T Consensus 347 ~~l~~~l~~l~~~~~~~~~~i~~~~~~yS~i~~~l~~~~~~l~~ie~~q~~~~~~l~ 403 (560)
T PF06160_consen 347 RELEKQLKELEKRYEDLEERIEEQQVPYSEIQEELEEIEEQLEEIEEEQEEINESLQ 403 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677888889999999999999999999999999999999998888776654433
No 222
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=20.49 E-value=5.1e+02 Score=21.68 Aligned_cols=20 Identities=15% Similarity=0.204 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 018258 245 TEKNLRLQLTADGEKFQQFQ 264 (359)
Q Consensus 245 tE~eLr~QL~~Y~eKF~EFQ 264 (359)
+-..|..++..+...-.+|.
T Consensus 14 ~i~~l~~~i~~l~~~i~e~~ 33 (126)
T TIGR00293 14 QVESLQAQIAALRALIAELE 33 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33334444444433333333
No 223
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=20.47 E-value=8.4e+02 Score=24.17 Aligned_cols=73 Identities=21% Similarity=0.304 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHHHHHHHH
Q 018258 248 NLRLQLTADGEKFQQFQDALVKSNEVFETFKQEIEKMAKSIKELKKENAFLKSKCEKSDFTLIELVEERERMKKQLEKSK 327 (359)
Q Consensus 248 eLr~QL~~Y~eKF~EFQdTL~KSNevF~tFKkEMEKMsKKiKkLEKEn~~~k~K~E~sn~aLiemaeEr~~~~ke~e~~k 327 (359)
+|+.-+....+||++.+ +|-+.+-+..-.||-+-...+-+..........+-+.+..+-.++..++
T Consensus 132 d~ke~~ee~kekl~E~~--------------~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~ 197 (290)
T COG4026 132 DLKEDYEELKEKLEELQ--------------KEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLK 197 (290)
T ss_pred HHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHH
Q ss_pred HHHHHHH
Q 018258 328 NQKEKLE 334 (359)
Q Consensus 328 kq~ekLe 334 (359)
+..+-|+
T Consensus 198 ~r~~ELe 204 (290)
T COG4026 198 KRWDELE 204 (290)
T ss_pred HHHHHhc
No 224
>PF08580 KAR9: Yeast cortical protein KAR9; InterPro: IPR013889 The KAR9 protein in Saccharomyces cerevisiae (Baker's yeast) is a cytoskeletal protein required for karyogamy, correct positioning of the mitotic spindle and for orientation of cytoplasmic microtubules []. KAR9 localises at the shmoo tip in mating cells and at the tip of the growing bud in anaphase [].
Probab=20.22 E-value=1.2e+03 Score=26.02 Aligned_cols=42 Identities=19% Similarity=0.211 Sum_probs=33.1
Q ss_pred HhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 018258 307 FTLIELVEE-RERMKKQLEKSKNQKEKLESLCRSLQAERKQNS 348 (359)
Q Consensus 307 ~aLiemaeE-r~~~~ke~e~~kkq~ekLe~LCRaLQ~ER~~~~ 348 (359)
+..++.|-| .+.|...+..+...++.+-.+|-.||..|-..+
T Consensus 115 K~qveiAmE~~EL~~~vlg~l~~EIe~~~~~vfemeE~R~~Sp 157 (683)
T PF08580_consen 115 KKQVEIAMEWEELWNDVLGDLDNEIEECIRLVFEMEEKRHSSP 157 (683)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence 344555555 666777788899999999999999999996655
No 225
>PF04380 BMFP: Membrane fusogenic activity; InterPro: IPR007475 BMFP consists of two structural domains, a coiled-coil C-terminal domain via which the protein self-associates as a trimer, and an N-terminal domain disordered at neutral pH but adopting an amphipathic alpha-helical structure in the presence of phospholipid vesicles, high ionic strength, acidic pH or SDS. BMFP interacts with phospholipid vesicles though the predicted amphipathic alpha-helix induced in the N-terminal half of the protein and promotes aggregation and fusion of vesicles in vitro.
Probab=20.19 E-value=4.6e+02 Score=20.98 Aligned_cols=29 Identities=17% Similarity=0.269 Sum_probs=14.6
Q ss_pred HHHHHHHHhhcHHHHHHHHHHHHHHHHHH
Q 018258 260 FQQFQDALVKSNEVFETFKQEIEKMAKSI 288 (359)
Q Consensus 260 F~EFQdTL~KSNevF~tFKkEMEKMsKKi 288 (359)
|++|..-++..=..+.+++.|+++..+.+
T Consensus 8 ~d~~~~~~~~~~~~~~~~~~e~e~~~r~~ 36 (79)
T PF04380_consen 8 FDDLAKQISEALPAAQGPREEIEKNIRAR 36 (79)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 44444444444444455666665554433
No 226
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=20.04 E-value=9.9e+02 Score=24.82 Aligned_cols=64 Identities=17% Similarity=0.212 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 018258 283 KMAKSIKELKKENAFLKSKCEKSDFTLIELVE---ERERMKKQLEKSKNQKEKLESLCRSLQAERKQ 346 (359)
Q Consensus 283 KMsKKiKkLEKEn~~~k~K~E~sn~aLiemae---Er~~~~ke~e~~kkq~ekLe~LCRaLQ~ER~~ 346 (359)
.+-+..++|-.+...++.+.....+.+-.+.. +...+..+...++.++..|+.-...+.+++..
T Consensus 32 ~ld~~~r~l~~~~~~lr~~rn~~sk~i~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~ 98 (425)
T PRK05431 32 ELDEERRELQTELEELQAERNALSKEIGQAKRKGEDAEALIAEVKELKEEIKALEAELDELEAELEE 98 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444443332111 23345555666777777777777777777654
No 227
>PF05812 Herpes_BLRF2: Herpesvirus BLRF2 protein; InterPro: IPR008642 This family consists of several herpes virus BLRF2 tegument proteins.; PDB: 2OA5_B 2H3R_D.
Probab=20.03 E-value=1.3e+02 Score=26.42 Aligned_cols=28 Identities=32% Similarity=0.376 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 018258 280 EIEKMAKSIKELKKENAFLKSKCEKSDF 307 (359)
Q Consensus 280 EMEKMsKKiKkLEKEn~~~k~K~E~sn~ 307 (359)
-||.|.+.+-+|+=||..||++.-.+..
T Consensus 4 t~EeLaaeL~kLqmENk~LKkkl~~~~~ 31 (118)
T PF05812_consen 4 TMEELAAELQKLQMENKALKKKLRQSVG 31 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTT-
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence 4899999999999999999999877664
Done!