Query 018258
Match_columns 359
No_of_seqs 125 out of 155
Neff 4.6
Searched_HMMs 29240
Date Mon Mar 25 12:25:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018258.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018258hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1c1g_A Tropomyosin; contractIl 97.1 0.11 3.8E-06 45.0 40.5 26 84-109 5-30 (284)
2 1i84_S Smooth muscle myosin he 96.8 0.0066 2.3E-07 67.5 11.7 13 90-102 862-874 (1184)
3 1i84_S Smooth muscle myosin he 95.9 0.028 9.5E-07 62.6 10.4 31 276-306 1078-1108(1184)
4 3na7_A HP0958; flagellar bioge 95.7 1.2 4.3E-05 41.1 21.0 104 238-346 61-168 (256)
5 1c1g_A Tropomyosin; contractIl 95.2 1.4 4.7E-05 38.0 39.9 12 290-301 220-231 (284)
6 3vkg_A Dynein heavy chain, cyt 95.0 10 0.00035 46.9 30.5 91 247-337 2017-2107(3245)
7 2v66_B Nuclear distribution pr 94.0 2.1 7.2E-05 35.8 14.3 86 239-324 5-101 (111)
8 3u1c_A Tropomyosin alpha-1 cha 93.5 2.6 8.8E-05 34.2 15.6 88 247-334 12-99 (101)
9 3u59_A Tropomyosin beta chain; 92.5 3.5 0.00012 33.2 15.0 88 247-334 12-99 (101)
10 3tnu_B Keratin, type II cytosk 92.3 0.95 3.3E-05 38.0 9.8 83 255-340 12-94 (129)
11 3tnu_A Keratin, type I cytoske 90.6 1.3 4.5E-05 37.3 9.0 83 255-340 14-96 (131)
12 3na7_A HP0958; flagellar bioge 90.4 11 0.00036 34.8 19.6 57 287-343 91-147 (256)
13 2v71_A Nuclear distribution pr 89.9 11 0.00038 34.1 20.5 128 182-324 15-154 (189)
14 3oja_B Anopheles plasmodium-re 88.8 7.1 0.00024 39.1 14.2 54 276-329 527-580 (597)
15 3trt_A Vimentin; cytoskeleton, 87.2 2.2 7.6E-05 32.4 7.3 45 255-299 32-76 (77)
16 3ghg_A Fibrinogen alpha chain; 85.3 9 0.00031 39.8 12.6 92 242-337 55-154 (562)
17 2fxo_A Myosin heavy chain, car 84.4 17 0.00058 30.3 18.9 91 231-335 35-125 (129)
18 3oja_B Anopheles plasmodium-re 84.3 27 0.00093 34.8 15.7 64 242-305 507-570 (597)
19 2dfs_A Myosin-5A; myosin-V, in 83.9 20 0.00069 39.9 15.7 65 274-341 986-1050(1080)
20 2v4h_A NF-kappa-B essential mo 83.4 17 0.00058 30.4 11.3 77 257-333 30-109 (110)
21 1ic2_A Tropomyosin alpha chain 83.1 12 0.00041 28.9 9.9 64 247-310 9-72 (81)
22 2dfs_A Myosin-5A; myosin-V, in 82.0 61 0.0021 36.1 18.5 33 282-314 1019-1051(1080)
23 1ic2_A Tropomyosin alpha chain 81.6 5.8 0.0002 30.7 7.5 60 281-340 1-60 (81)
24 3u59_A Tropomyosin beta chain; 77.1 26 0.0009 28.0 15.1 55 238-292 45-99 (101)
25 3jsv_C NF-kappa-B essential mo 76.3 15 0.0005 30.0 8.5 83 253-335 4-89 (94)
26 2jee_A YIIU; FTSZ, septum, coi 74.0 31 0.0011 27.3 11.6 62 270-331 4-72 (81)
27 3hnw_A Uncharacterized protein 73.7 29 0.00098 29.6 10.3 54 274-334 77-130 (138)
28 1go4_E MAD1 (mitotic arrest de 71.4 6.8 0.00023 32.2 5.5 71 270-342 10-96 (100)
29 3u1c_A Tropomyosin alpha-1 cha 65.3 52 0.0018 26.4 15.6 55 238-292 45-99 (101)
30 3oja_A Leucine-rich immune mol 64.5 1.1E+02 0.0037 29.8 15.1 57 250-313 413-469 (487)
31 2v71_A Nuclear distribution pr 61.6 93 0.0032 28.1 14.7 39 270-308 40-85 (189)
32 3vkg_A Dynein heavy chain, cyt 60.4 3.4E+02 0.011 34.1 28.5 21 92-112 1895-1915(3245)
33 2v66_B Nuclear distribution pr 59.9 48 0.0016 27.6 8.6 26 283-308 7-32 (111)
34 2jee_A YIIU; FTSZ, septum, coi 57.7 68 0.0023 25.3 10.7 74 258-331 6-79 (81)
35 3oja_A Leucine-rich immune mol 51.9 1.8E+02 0.006 28.3 14.5 53 288-340 423-479 (487)
36 3jsv_C NF-kappa-B essential mo 48.9 1.1E+02 0.0036 24.9 10.1 77 216-306 9-88 (94)
37 3hnw_A Uncharacterized protein 47.9 1.3E+02 0.0044 25.5 11.0 28 315-342 104-131 (138)
38 1x79_B RAB GTPase binding effe 47.0 1.2E+02 0.0042 25.1 11.9 93 239-334 8-104 (112)
39 3m91_A Proteasome-associated A 46.9 43 0.0015 24.2 5.5 39 247-285 12-50 (51)
40 2w6b_A RHO guanine nucleotide 46.1 58 0.002 24.1 6.0 38 112-149 13-50 (56)
41 3sja_C Golgi to ER traffic pro 44.6 66 0.0022 24.5 6.4 50 87-136 8-59 (65)
42 2e7s_A RAB guanine nucleotide 44.6 68 0.0023 27.6 7.3 62 287-348 68-130 (135)
43 2eqb_B RAB guanine nucleotide 44.3 1.1E+02 0.0039 24.8 8.2 83 248-330 9-92 (97)
44 1m1j_C Fibrinogen gamma chain; 44.0 2.5E+02 0.0087 27.9 13.3 19 323-341 114-132 (409)
45 2ocy_A RAB guanine nucleotide 42.3 1.7E+02 0.0059 25.5 19.5 63 285-347 78-141 (154)
46 2efr_A General control protein 42.0 1.7E+02 0.006 25.4 22.6 54 280-333 99-152 (155)
47 3q8t_A Beclin-1; autophagy, AT 40.5 1.4E+02 0.0047 23.8 14.5 57 279-335 39-95 (96)
48 1deq_A Fibrinogen (alpha chain 40.2 2.9E+02 0.01 27.5 13.7 38 298-335 118-155 (390)
49 3s9g_A Protein hexim1; cyclin 39.4 1.6E+02 0.0054 24.2 8.8 53 92-144 37-89 (104)
50 3r2p_A Apolipoprotein A-I; amp 39.1 1.9E+02 0.0065 25.0 11.0 19 244-262 155-173 (185)
51 3ghg_A Fibrinogen alpha chain; 38.4 3E+02 0.01 28.7 12.0 56 275-335 134-190 (562)
52 3bas_A Myosin heavy chain, str 37.6 1.4E+02 0.0049 23.2 9.8 65 283-347 11-75 (89)
53 3iv1_A Tumor susceptibility ge 35.8 1.6E+02 0.0054 23.1 9.7 70 179-269 9-78 (78)
54 2fxo_A Myosin heavy chain, car 35.7 1.8E+02 0.0063 23.9 17.9 9 208-216 80-88 (129)
55 3a7p_A Autophagy protein 16; c 35.0 2.3E+02 0.0078 24.8 11.9 33 270-302 101-133 (152)
56 3s4r_A Vimentin; alpha-helix, 34.7 1.7E+02 0.0058 23.1 9.6 64 123-189 26-89 (93)
57 2yy0_A C-MYC-binding protein; 33.2 72 0.0025 23.0 4.9 34 271-304 18-51 (53)
58 1a92_A Delta antigen; leucine 28.6 71 0.0024 23.1 4.0 25 110-134 8-32 (50)
59 2v4h_A NF-kappa-B essential mo 28.2 2.6E+02 0.0088 23.2 13.1 45 245-303 63-107 (110)
60 1zhc_A Hypothetical protein HP 27.3 1.3E+02 0.0043 23.0 5.7 67 262-336 7-73 (76)
61 3cve_A Homer protein homolog 1 26.4 2.2E+02 0.0076 21.9 9.6 60 282-341 3-66 (72)
62 2eqb_B RAB guanine nucleotide 26.0 2.6E+02 0.009 22.6 13.5 29 281-309 7-35 (97)
63 1hjb_A Ccaat/enhancer binding 25.0 1.9E+02 0.0065 22.8 6.4 40 311-350 40-79 (87)
64 3cvf_A Homer-3, homer protein 23.3 2.7E+02 0.0092 21.7 8.7 63 280-342 7-73 (79)
65 1ez3_A Syntaxin-1A; three heli 23.2 2.8E+02 0.0095 21.9 11.8 26 180-205 98-123 (127)
66 3k66_A Beta-amyloid-like prote 22.6 3.3E+02 0.011 25.4 8.5 46 116-161 31-76 (239)
67 2d1l_A Metastasis suppressor p 21.2 5E+02 0.017 24.1 11.1 67 274-345 133-200 (253)
68 2d8d_A Aroag, phospho-2-dehydr 21.0 2E+02 0.0068 21.9 5.8 36 295-330 5-40 (90)
69 1lwu_C Fibrinogen gamma chain; 21.0 2.2E+02 0.0075 27.5 7.3 17 321-337 40-56 (323)
70 3tkl_B LIDA protein, substrate 21.0 97 0.0033 28.9 4.5 77 234-310 39-126 (267)
71 3sjb_C Golgi to ER traffic pro 20.6 3E+02 0.01 22.2 6.8 53 83-135 21-75 (93)
No 1
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=97.13 E-value=0.11 Score=45.05 Aligned_cols=26 Identities=8% Similarity=-0.036 Sum_probs=14.6
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHh
Q 018258 84 SKRTFKSEKEFLEFTLKYQQVLAERD 109 (359)
Q Consensus 84 ~k~~~~ler~~~~~~~~~~qv~~Er~ 109 (359)
.++|..++.++-.+......+..+..
T Consensus 5 ~~~~~~l~~~~~~~~~~~~~l~~~l~ 30 (284)
T 1c1g_A 5 KKKMQMLKLDKENALDRADEAEADKK 30 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 35556666666666655555554443
No 2
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=96.75 E-value=0.0066 Score=67.54 Aligned_cols=13 Identities=15% Similarity=0.187 Sum_probs=4.9
Q ss_pred hhHHHHHHHHHHH
Q 018258 90 SEKEFLEFTLKYQ 102 (359)
Q Consensus 90 ler~~~~~~~~~~ 102 (359)
+++++.++..++.
T Consensus 862 L~~eL~el~~~L~ 874 (1184)
T 1i84_S 862 KDEELQRTKERQQ 874 (1184)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 3
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=95.89 E-value=0.028 Score=62.59 Aligned_cols=31 Identities=10% Similarity=0.191 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 018258 276 TFKQEIEKMAKSIKELKKENAFLKSKCEKSD 306 (359)
Q Consensus 276 tFKkEMEKMsKKiKkLEKEn~~~k~K~E~sn 306 (359)
....++..+..+++.++.+...+..+.+...
T Consensus 1078 el~~el~~le~~l~~le~el~~l~~~le~l~ 1108 (1184)
T 1i84_S 1078 ELQAQIAELKAQLAKKEEELQAALARLEDET 1108 (1184)
T ss_dssp -------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444445555444444444433
No 4
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=95.74 E-value=1.2 Score=41.07 Aligned_cols=104 Identities=13% Similarity=0.157 Sum_probs=70.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHHHH
Q 018258 238 QVSQLLATEKNLRLQLTADGEKFQQFQDALVKSNEVFETFKQEIEKMAKSIKELKKENAFLKSKCEKSDFTLIELVEERE 317 (359)
Q Consensus 238 qv~~l~~tE~eLr~QL~~Y~eKF~EFQdTL~KSNevF~tFKkEMEKMsKKiKkLEKEn~~~k~K~E~sn~aLiemaeEr~ 317 (359)
++..+...-..++..+.-|..+... .++|.-|..+..||+-+.+++..||++...+-.+.+.....+-...+...
T Consensus 61 ~~~~~e~~i~~~~~ri~~~~~~l~~-----v~~~kE~~aL~kEie~~~~~i~~lE~eile~~e~ie~~~~~l~~~~~~l~ 135 (256)
T 3na7_A 61 QVSKNEQTLQDTNAKIASIQKKMSE-----IKSERELRSLNIEEDIAKERSNQANREIENLQNEIKRKSEKQEDLKKEML 135 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH-----CSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHc-----cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333344455555555444432 34889999999999999999999999999999999988888877776666
Q ss_pred HHHHHHHHHHH----HHHHHHHHHHHHHHHhhc
Q 018258 318 RMKKQLEKSKN----QKEKLESLCRSLQAERKQ 346 (359)
Q Consensus 318 ~~~ke~e~~kk----q~ekLe~LCRaLQ~ER~~ 346 (359)
.+..++...+. .+..+..-...|..+|..
T Consensus 136 ~~~~~l~~~~~~~~~~~~e~~~e~~~l~~~r~~ 168 (256)
T 3na7_A 136 ELEKLALELESLVENEVKNIKETQQIIFKKKED 168 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666654333 334455555555566644
No 5
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=95.18 E-value=1.4 Score=38.03 Aligned_cols=12 Identities=25% Similarity=0.332 Sum_probs=4.3
Q ss_pred HHHHHHHHHHHH
Q 018258 290 ELKKENAFLKSK 301 (359)
Q Consensus 290 kLEKEn~~~k~K 301 (359)
.++.+...+...
T Consensus 220 ~~~~~l~~l~~~ 231 (284)
T 1c1g_A 220 KYEEEIKVLSDK 231 (284)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 6
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=94.96 E-value=10 Score=46.92 Aligned_cols=91 Identities=20% Similarity=0.217 Sum_probs=75.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHHHHHHH
Q 018258 247 KNLRLQLTADGEKFQQFQDALVKSNEVFETFKQEIEKMAKSIKELKKENAFLKSKCEKSDFTLIELVEERERMKKQLEKS 326 (359)
Q Consensus 247 ~eLr~QL~~Y~eKF~EFQdTL~KSNevF~tFKkEMEKMsKKiKkLEKEn~~~k~K~E~sn~aLiemaeEr~~~~ke~e~~ 326 (359)
..+..+|..-.++..+.++.|..-++-...++.+.+........|+.+......|.+.+.+-+-.+..|+.+|.+.+..+
T Consensus 2017 ~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~~kl~rA~~Li~gL~~Ek~RW~~~~~~l 2096 (3245)
T 3vkg_A 2017 EQLENAANELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVKNKVDRSIALLDNLNSERGRWEQQSENF 2096 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHH
Confidence 34445555566666667777777777777788888888889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHH
Q 018258 327 KNQKEKLESLC 337 (359)
Q Consensus 327 kkq~ekLe~LC 337 (359)
..+...|-+=|
T Consensus 2097 ~~~~~~L~GD~ 2107 (3245)
T 3vkg_A 2097 NTQMSTVVGDV 2107 (3245)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHhccHHH
Confidence 99988887643
No 7
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=94.02 E-value=2.1 Score=35.83 Aligned_cols=86 Identities=17% Similarity=0.246 Sum_probs=65.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHH--
Q 018258 239 VSQLLATEKNLRLQLTADGEKFQQFQD----ALVKSNEVFETFKQEIEKMAKSIKELKKENAFLKSKCEKSDFTLIEL-- 312 (359)
Q Consensus 239 v~~l~~tE~eLr~QL~~Y~eKF~EFQd----TL~KSNevF~tFKkEMEKMsKKiKkLEKEn~~~k~K~E~sn~aLiem-- 312 (359)
...|...-..|...+..|..||...+. +++.-..-.++++.+-+.|.+.|+.||-.|..+-+..=.+...|-+|
T Consensus 5 ~rdL~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~El~~lr~~~~~l~~~iReLEq~NDDLER~~R~t~~SLeD~E~ 84 (111)
T 2v66_B 5 NRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIVSLEDFEQ 84 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHhhHHHHHH
Confidence 445556667788889999999999875 45555667788888999999999999999999988877777777666
Q ss_pred -----HHHHHHHHHHHH
Q 018258 313 -----VEERERMKKQLE 324 (359)
Q Consensus 313 -----aeEr~~~~ke~e 324 (359)
++....+..+++
T Consensus 85 k~n~aiErnalLE~El~ 101 (111)
T 2v66_B 85 RLNQAIERNAFLESELD 101 (111)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 444445555554
No 8
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=93.46 E-value=2.6 Score=34.21 Aligned_cols=88 Identities=13% Similarity=0.173 Sum_probs=76.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHHHHHHH
Q 018258 247 KNLRLQLTADGEKFQQFQDALVKSNEVFETFKQEIEKMAKSIKELKKENAFLKSKCEKSDFTLIELVEERERMKKQLEKS 326 (359)
Q Consensus 247 ~eLr~QL~~Y~eKF~EFQdTL~KSNevF~tFKkEMEKMsKKiKkLEKEn~~~k~K~E~sn~aLiemaeEr~~~~ke~e~~ 326 (359)
..|+.....|.+++++.+.-+...+.-...+-.|+.-+.++|..||-+......+...++..|-..-..++....++..+
T Consensus 12 ~~lk~e~e~a~drae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~kLee~ek~~~~aE~ev~~L 91 (101)
T 3u1c_A 12 QMLKLDKENALDRAEQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKSEDSLLFAEENAAKAESEVASL 91 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777888899999999999999999999999999999999999999999999998888888877666667777788888
Q ss_pred HHHHHHHH
Q 018258 327 KNQKEKLE 334 (359)
Q Consensus 327 kkq~ekLe 334 (359)
.++|.-|+
T Consensus 92 ~RriqllE 99 (101)
T 3u1c_A 92 NRRIQLVE 99 (101)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHc
Confidence 88888775
No 9
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=92.53 E-value=3.5 Score=33.23 Aligned_cols=88 Identities=10% Similarity=0.142 Sum_probs=72.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHHHHHHH
Q 018258 247 KNLRLQLTADGEKFQQFQDALVKSNEVFETFKQEIEKMAKSIKELKKENAFLKSKCEKSDFTLIELVEERERMKKQLEKS 326 (359)
Q Consensus 247 ~eLr~QL~~Y~eKF~EFQdTL~KSNevF~tFKkEMEKMsKKiKkLEKEn~~~k~K~E~sn~aLiemaeEr~~~~ke~e~~ 326 (359)
..|+.....+.++.++.+.-+...+.-...+-.|+.-+.++|+.||-+......++..++..|-..-..++....++..+
T Consensus 12 ~~lk~e~e~a~d~ae~~e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~~e~l~~a~~kLe~~ek~~~~AE~evasL 91 (101)
T 3u59_A 12 QMLKLDKENAIDRAEQAEADKKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYSESVKEAQEKLEQAEKKATDAEAEVASL 91 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777888999999999999999999999999999999999999999888888888877776655566677778888
Q ss_pred HHHHHHHH
Q 018258 327 KNQKEKLE 334 (359)
Q Consensus 327 kkq~ekLe 334 (359)
.++|.-|+
T Consensus 92 nRriqllE 99 (101)
T 3u59_A 92 NRRIQLVE 99 (101)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHc
Confidence 88877664
No 10
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=92.31 E-value=0.95 Score=38.00 Aligned_cols=83 Identities=19% Similarity=0.305 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018258 255 ADGEKFQQFQDALVKSNEVFETFKQEIEKMAKSIKELKKENAFLKSKCEKSDFTLIELVEERERMKKQLEKSKNQKEKLE 334 (359)
Q Consensus 255 ~Y~eKF~EFQdTL~KSNevF~tFKkEMEKMsKKiKkLEKEn~~~k~K~E~sn~aLiemaeEr~~~~ke~e~~kkq~ekLe 334 (359)
.|..||++++....+.++...+.|.|+-.+...+..|+-|...++.........|-++-. ....++..++.++..|+
T Consensus 12 ~y~~K~eel~~~~~~~~~~l~~~k~Ei~elrr~iq~L~~el~~l~~~~~~LE~~l~e~e~---~~~~~l~~~q~~i~~lE 88 (129)
T 3tnu_B 12 WYQTKYEELQQTAGRHGDDLRNTKHEISEMNRMIQRLRAEIDNVKKQCANLQNAIADAEQ---RGELALKDARNKLAELE 88 (129)
T ss_dssp ----------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 699999999999999999999999999999999999999999999887777777665422 22334445555555555
Q ss_pred HHHHHH
Q 018258 335 SLCRSL 340 (359)
Q Consensus 335 ~LCRaL 340 (359)
.=.+.+
T Consensus 89 ~eL~~~ 94 (129)
T 3tnu_B 89 EALQKA 94 (129)
T ss_dssp HHHHHH
T ss_pred HhHHHH
Confidence 444333
No 11
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=90.62 E-value=1.3 Score=37.29 Aligned_cols=83 Identities=18% Similarity=0.127 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018258 255 ADGEKFQQFQDALVKSNEVFETFKQEIEKMAKSIKELKKENAFLKSKCEKSDFTLIELVEERERMKKQLEKSKNQKEKLE 334 (359)
Q Consensus 255 ~Y~eKF~EFQdTL~KSNevF~tFKkEMEKMsKKiKkLEKEn~~~k~K~E~sn~aLiemaeEr~~~~ke~e~~kkq~ekLe 334 (359)
.|..||++++....+.++...+.|.|+-.+...+..|+-|...++.........|-++-. ....++..++.++..|+
T Consensus 14 ~y~~K~eel~~~~~~~~~~l~~~k~Ei~elrr~iq~L~~el~~l~~~~~sLE~~l~e~e~---~~~~~l~~~q~~i~~lE 90 (131)
T 3tnu_A 14 WFFTKTEELNREVATNSELVQSGKSEISELRRTMQNLEIELQSQLSMKASLENSLEETKG---RYCMQLAQIQEMIGSVE 90 (131)
T ss_dssp ---------------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 699999999999999999999999999999999999999999998887777666655422 22334444555555555
Q ss_pred HHHHHH
Q 018258 335 SLCRSL 340 (359)
Q Consensus 335 ~LCRaL 340 (359)
.=.+.+
T Consensus 91 ~eL~~~ 96 (131)
T 3tnu_A 91 EQLAQL 96 (131)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444433
No 12
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=90.44 E-value=11 Score=34.75 Aligned_cols=57 Identities=21% Similarity=0.302 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018258 287 SIKELKKENAFLKSKCEKSDFTLIELVEERERMKKQLEKSKNQKEKLESLCRSLQAE 343 (359)
Q Consensus 287 KiKkLEKEn~~~k~K~E~sn~aLiemaeEr~~~~ke~e~~kkq~ekLe~LCRaLQ~E 343 (359)
-...|.+|...++.+.......++++.+....+...++.+...+..++.-...++++
T Consensus 91 E~~aL~kEie~~~~~i~~lE~eile~~e~ie~~~~~l~~~~~~l~~~~~~l~~~~~~ 147 (256)
T 3na7_A 91 ELRSLNIEEDIAKERSNQANREIENLQNEIKRKSEKQEDLKKEMLELEKLALELESL 147 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666666666666666666666666655555555555555555444444443
No 13
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=89.91 E-value=11 Score=34.13 Aligned_cols=128 Identities=14% Similarity=0.203 Sum_probs=82.5
Q ss_pred HHHHHHHHHHHHhhHHHHHHHH-HhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018258 182 LRTNLKQLADQYALTEQQYAQK-LKQKTLELQIGELKIKQHEEKLVQEQSQMKLYAEQVSQLLATEKNLRLQLTADGEKF 260 (359)
Q Consensus 182 LreKLK~lieQYElRE~h~~k~-lK~KeLE~QL~~AKleq~~e~~~~Ek~q~k~l~eqv~~l~~tE~eLr~QL~~Y~eKF 260 (359)
.+.....+..+|+.-+.-|+.- --+++||..|- + .+..+..++..+...-..|+..+..|..||
T Consensus 15 wk~~~~~~~q~~~~le~El~EFqesSrELE~ELE-~--------------eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~ 79 (189)
T 2v71_A 15 WKELSMKYKQSFQEARDELVEFQEGSRELEAELE-A--------------QLVQAEQRNRDLQADNQRLKYEVEALKEKL 79 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555566666666555555542 23445554221 1 122233345555566677788888888999
Q ss_pred HHHHHH----HhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHH-------HHHHHHHHHHHH
Q 018258 261 QQFQDA----LVKSNEVFETFKQEIEKMAKSIKELKKENAFLKSKCEKSDFTLIEL-------VEERERMKKQLE 324 (359)
Q Consensus 261 ~EFQdT----L~KSNevF~tFKkEMEKMsKKiKkLEKEn~~~k~K~E~sn~aLiem-------aeEr~~~~ke~e 324 (359)
...+.- ++.=..=.++++...+.+.++|+.||-.|..+-+..=.+...+-++ ++....+..+++
T Consensus 80 ~~~~~e~~~~~~~Lq~el~~l~~~~~~l~~~ireLEq~NDdlEr~~R~~~~SleD~e~kln~aiEr~alLE~El~ 154 (189)
T 2v71_A 80 EHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIMSLEDFEQRLNQAIERNAFLESELD 154 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 876544 4444556778999999999999999999999988876666655544 555555566655
No 14
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=88.82 E-value=7.1 Score=39.11 Aligned_cols=54 Identities=17% Similarity=0.268 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHHHHHHHHHH
Q 018258 276 TFKQEIEKMAKSIKELKKENAFLKSKCEKSDFTLIELVEERERMKKQLEKSKNQ 329 (359)
Q Consensus 276 tFKkEMEKMsKKiKkLEKEn~~~k~K~E~sn~aLiemaeEr~~~~ke~e~~kkq 329 (359)
.|+++.+.+.+.++.++++...|..+.+.....+.++..|.+.+..++..+..+
T Consensus 527 ~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~~~ 580 (597)
T 3oja_B 527 ARRTEADAKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQLEAK 580 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHhhhhhhcchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 355566666677777888888888888888888888888777776666554443
No 15
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=87.25 E-value=2.2 Score=32.43 Aligned_cols=45 Identities=24% Similarity=0.314 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018258 255 ADGEKFQQFQDALVKSNEVFETFKQEIEKMAKSIKELKKENAFLK 299 (359)
Q Consensus 255 ~Y~eKF~EFQdTL~KSNevF~tFKkEMEKMsKKiKkLEKEn~~~k 299 (359)
.|..||++++....+.++...+.|.|+-.+...+..|+-|...++
T Consensus 32 ~y~~k~eel~~~~~~~~~~l~~~k~Ei~elrr~iq~L~~el~slk 76 (77)
T 3trt_A 32 WYKSKFADLSEAANRNNDALRQAKQESTEYRRQVQSLTMEVDALK 76 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 699999999999999999999999999999999999999988775
No 16
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=85.30 E-value=9 Score=39.77 Aligned_cols=92 Identities=12% Similarity=0.147 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHhhhHhHHHHH
Q 018258 242 LLATEKNLRLQLTADGEKFQQFQDALVKSNEVFETFKQEIEKMAKSIKELKKENA--------FLKSKCEKSDFTLIELV 313 (359)
Q Consensus 242 l~~tE~eLr~QL~~Y~eKF~EFQdTL~KSNevF~tFKkEMEKMsKKiKkLEKEn~--------~~k~K~E~sn~aLiema 313 (359)
|.++|.++..-|+--...|++++ .+++++|.-|+.=|+.+.++++.-- +|. .|++++.-....|..-+
T Consensus 55 LdkqErDltkrINELKnqLEdls---KnsKdseqy~k~~~E~Lr~rq~q~~-dNdNtynE~S~ELRRrIqyLKekVdnQl 130 (562)
T 3ghg_A 55 IDEVNQDFTNRINKLKNSLFEYQ---KNNKDSHSLTTNIMEILRGDFSSAN-NRDNTYNRVSEDLRSRIEVLKRKVIEKV 130 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHTHHH---HHHHHHHHHHHHHHHTTSSHHHHHH-HHHHHHHHTTHHHHHHHHHHHHHHHHHH
T ss_pred HHhhcCcHHHHHHHHHHHHHHHH---hhchhHHHHHHHHHHHHHHHHHhhh-ccchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45777788777777777777775 4555666666666666655555444 322 45666666666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 018258 314 EERERMKKQLEKSKNQKEKLESLC 337 (359)
Q Consensus 314 eEr~~~~ke~e~~kkq~ekLe~LC 337 (359)
.-...|+.-|+.+..+|.+||.=+
T Consensus 131 snIrvLQsnLedq~~kIQRLEvDI 154 (562)
T 3ghg_A 131 QHIQLLQKNVRAQLVDMKRLEVDI 154 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555666667777777777777543
No 17
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=84.35 E-value=17 Score=30.35 Aligned_cols=91 Identities=18% Similarity=0.306 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHH
Q 018258 231 QMKLYAEQVSQLLATEKNLRLQLTADGEKFQQFQDALVKSNEVFETFKQEIEKMAKSIKELKKENAFLKSKCEKSDFTLI 310 (359)
Q Consensus 231 q~k~l~eqv~~l~~tE~eLr~QL~~Y~eKF~EFQdTL~KSNevF~tFKkEMEKMsKKiKkLEKEn~~~k~K~E~sn~aLi 310 (359)
....|......+...-..|..||....+.+.+..+. .+++.+.-..||.....+..+.+.--....
T Consensus 35 ~r~ele~~~~~l~~Ek~~L~~qL~~E~~~l~e~EE~--------------~~~L~~~k~eLe~~l~el~~rleeeee~~~ 100 (129)
T 2fxo_A 35 RRKELEEKMVSLLQEKNDLQLQVQAEQDNLADAEER--------------CDQLIKNKIQLEAKVKEMNKRLEDEEEMNA 100 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455555555566777777666555554432 233344444555555556666666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 018258 311 ELVEERERMKKQLEKSKNQKEKLES 335 (359)
Q Consensus 311 emaeEr~~~~ke~e~~kkq~ekLe~ 335 (359)
.+..++..+..++..++++++-|+.
T Consensus 101 ~L~~~kkkle~e~~~Lk~~led~e~ 125 (129)
T 2fxo_A 101 ELTAKKRKLEDECSELKRDIDDLEL 125 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6677777777777777777776653
No 18
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=84.31 E-value=27 Score=34.83 Aligned_cols=64 Identities=14% Similarity=0.074 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 018258 242 LLATEKNLRLQLTADGEKFQQFQDALVKSNEVFETFKQEIEKMAKSIKELKKENAFLKSKCEKS 305 (359)
Q Consensus 242 l~~tE~eLr~QL~~Y~eKF~EFQdTL~KSNevF~tFKkEMEKMsKKiKkLEKEn~~~k~K~E~s 305 (359)
+.++...++...+....+...|+.....-++.+..+++|+++|-+++....+....++......
T Consensus 507 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~ 570 (597)
T 3oja_B 507 LNKVFTHLKERQAFKLRETQARRTEADAKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLK 570 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHhhhhhhcchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 3444445555555555566666666666666666666666666665555555544444443333
No 19
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=83.85 E-value=20 Score=39.87 Aligned_cols=65 Identities=20% Similarity=0.247 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018258 274 FETFKQEIEKMAKSIKELKKENAFLKSKCEKSDFTLIELVEERERMKKQLEKSKNQKEKLESLCRSLQ 341 (359)
Q Consensus 274 F~tFKkEMEKMsKKiKkLEKEn~~~k~K~E~sn~aLiemaeEr~~~~ke~e~~kkq~ekLe~LCRaLQ 341 (359)
-.....|++.+.+.+.++-+|...+..+++.... ++.+....+.++...++.|++.|+.+....+
T Consensus 986 v~~L~~e~~~l~~~~~~~~ke~~~lee~~~~~~~---~L~~kv~~L~~e~~~L~qq~~~l~~~~~~~~ 1050 (1080)
T 2dfs_A 986 VLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKH---ETEQLVSELKEQNTLLKTEKEELNRRIHDQA 1050 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555556666666666655555544442 3334445555555566666666665444443
No 20
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=83.42 E-value=17 Score=30.37 Aligned_cols=77 Identities=27% Similarity=0.414 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHhhcHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018258 257 GEKFQQFQDALVKSNEVFETFKQEIEKMAK---SIKELKKENAFLKSKCEKSDFTLIELVEERERMKKQLEKSKNQKEKL 333 (359)
Q Consensus 257 ~eKF~EFQdTL~KSNevF~tFKkEMEKMsK---KiKkLEKEn~~~k~K~E~sn~aLiemaeEr~~~~ke~e~~kkq~ekL 333 (359)
..++..-+..|..=..-++-++.|+.++.+ .|--|+-....++.-|..=-.+.=.++.++..+..++..++.++.+|
T Consensus 30 ~~~L~~AEeaL~~Kq~~idelk~ei~q~~~~lE~I~vLkaQv~IY~~DF~aERadREkl~~eKe~L~~ql~~Lq~q~~~l 109 (110)
T 2v4h_A 30 RQQLQQAEEALVAKQELIDKLKEEAEQHKIVMETVPVLKAQADIYKADFQAERHAREKLVEKKEYLQEQLEQLQREFNKL 109 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHhHHHHHHHHHHHHHHHHHhc
Confidence 334444455555555556667777777766 77778888888888888877777788888888888888877776654
No 21
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=83.10 E-value=12 Score=28.89 Aligned_cols=64 Identities=14% Similarity=0.130 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHH
Q 018258 247 KNLRLQLTADGEKFQQFQDALVKSNEVFETFKQEIEKMAKSIKELKKENAFLKSKCEKSDFTLI 310 (359)
Q Consensus 247 ~eLr~QL~~Y~eKF~EFQdTL~KSNevF~tFKkEMEKMsKKiKkLEKEn~~~k~K~E~sn~aLi 310 (359)
..|+.....+.++..+.+.-|...+..+..+-.|+.-+.++|.-||-+......+...++.-|-
T Consensus 9 ~~lk~e~d~a~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~~a~~kLe 72 (81)
T 1ic2_A 9 QMLKLDKENALDRAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDKYSESLKDAQEKLE 72 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567778888999999999999999999999999999999999999999888888776666554
No 22
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=82.01 E-value=61 Score=36.09 Aligned_cols=33 Identities=21% Similarity=0.358 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHH
Q 018258 282 EKMAKSIKELKKENAFLKSKCEKSDFTLIELVE 314 (359)
Q Consensus 282 EKMsKKiKkLEKEn~~~k~K~E~sn~aLiemae 314 (359)
+.+..++..|++|+..|+...+..+..+.+..+
T Consensus 1019 ~~L~~kv~~L~~e~~~L~qq~~~l~~~~~~~~~ 1051 (1080)
T 2dfs_A 1019 HETEQLVSELKEQNTLLKTEKEELNRRIHDQAK 1051 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355588888899999888888877766665554
No 23
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=81.55 E-value=5.8 Score=30.69 Aligned_cols=60 Identities=12% Similarity=0.168 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018258 281 IEKMAKSIKELKKENAFLKSKCEKSDFTLIELVEERERMKKQLEKSKNQKEKLESLCRSL 340 (359)
Q Consensus 281 MEKMsKKiKkLEKEn~~~k~K~E~sn~aLiemaeEr~~~~ke~e~~kkq~ekLe~LCRaL 340 (359)
|+..-|||..|.-+...|.-+++.++..+-..-........++..+++++..|+.=.-..
T Consensus 1 m~~ikkKm~~lk~e~d~a~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ 60 (81)
T 1ic2_A 1 MDAIKKKMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDKY 60 (81)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 556778888888899999999998888887777777778888888888887776544433
No 24
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=77.08 E-value=26 Score=27.97 Aligned_cols=55 Identities=13% Similarity=0.163 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHH
Q 018258 238 QVSQLLATEKNLRLQLTADGEKFQQFQDALVKSNEVFETFKQEIEKMAKSIKELK 292 (359)
Q Consensus 238 qv~~l~~tE~eLr~QL~~Y~eKF~EFQdTL~KSNevF~tFKkEMEKMsKKiKkLE 292 (359)
.|..+...=..|...+..|.+.+..++.-|..+...++..-.|+.-++.+|.-||
T Consensus 45 ei~sL~kKiq~lE~eld~~~e~l~~a~~kLe~~ek~~~~AE~evasLnRriqllE 99 (101)
T 3u59_A 45 EQQGLQKKLKGTEDEVEKYSESVKEAQEKLEQAEKKATDAEAEVASLNRRIQLVE 99 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3444444444555555666666666666666555555555556666666665554
No 25
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=76.27 E-value=15 Score=29.98 Aligned_cols=83 Identities=27% Similarity=0.396 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHHHHHHHHHH
Q 018258 253 LTADGEKFQQFQDALVKSNEVFETFKQEIEKMA---KSIKELKKENAFLKSKCEKSDFTLIELVEERERMKKQLEKSKNQ 329 (359)
Q Consensus 253 L~~Y~eKF~EFQdTL~KSNevF~tFKkEMEKMs---KKiKkLEKEn~~~k~K~E~sn~aLiemaeEr~~~~ke~e~~kkq 329 (359)
|.-...+...-+.+|..=+..++-+|.+|.++. -.|--|.-....++.=|..=..+.=.+..++..+..++..++.+
T Consensus 4 ~~~L~~~L~~aEeaL~~kq~~id~lke~~~q~~~~~E~i~vLk~Qv~IY~~DF~aERadREkl~~eKe~L~~ql~~lq~q 83 (94)
T 3jsv_C 4 LEDLRQQLQQAEEALVAKQELIDKLKEEAEQHKIVMETVPVLKAQADIYKADFQAERHAREKLVEKKEYLQEQLEQLQRE 83 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 334455566677777777888888888888887 45666777777777777666666666677777777777666666
Q ss_pred HHHHHH
Q 018258 330 KEKLES 335 (359)
Q Consensus 330 ~ekLe~ 335 (359)
+.+|..
T Consensus 84 ~~~L~~ 89 (94)
T 3jsv_C 84 FNKLKV 89 (94)
T ss_dssp TC----
T ss_pred HHHHHH
Confidence 666554
No 26
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=73.98 E-value=31 Score=27.29 Aligned_cols=62 Identities=24% Similarity=0.285 Sum_probs=38.2
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHH-------HHHHHHHHHHHHHHHHHHHH
Q 018258 270 SNEVFETFKQEIEKMAKSIKELKKENAFLKSKCEKSDFTLIE-------LVEERERMKKQLEKSKNQKE 331 (359)
Q Consensus 270 SNevF~tFKkEMEKMsKKiKkLEKEn~~~k~K~E~sn~aLie-------maeEr~~~~ke~e~~kkq~e 331 (359)
|+++|+.+-.=+..+...|.-|.-|...+|.+....+...-+ +..+...+..+...++..+.
T Consensus 4 S~ElleqLE~KIq~avdtI~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl~ 72 (81)
T 2jee_A 4 SLEVFEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQ 72 (81)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 667777777777777777777777777777776665555555 33344444444444444433
No 27
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=73.72 E-value=29 Score=29.61 Aligned_cols=54 Identities=30% Similarity=0.349 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018258 274 FETFKQEIEKMAKSIKELKKENAFLKSKCEKSDFTLIELVEERERMKKQLEKSKNQKEKLE 334 (359)
Q Consensus 274 F~tFKkEMEKMsKKiKkLEKEn~~~k~K~E~sn~aLiemaeEr~~~~ke~e~~kkq~ekLe 334 (359)
...+..+++.+.+.+-.|-.+....+-+.+.....+-+ +.+++..+++++-+|+
T Consensus 77 ~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~-------l~~~~~~l~~~~~~le 130 (138)
T 3hnw_A 77 ADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKE-------LKSEINKYQKNIVKLE 130 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHH
Confidence 34444555555555555555555555555554444444 3344444444444444
No 28
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=71.45 E-value=6.8 Score=32.20 Aligned_cols=71 Identities=21% Similarity=0.440 Sum_probs=47.4
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----hhH------------hHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018258 270 SNEVFETFKQEIEKMAKSIKELKKENAFLKSKCEK----SDF------------TLIELVEERERMKKQLEKSKNQKEKL 333 (359)
Q Consensus 270 SNevF~tFKkEMEKMsKKiKkLEKEn~~~k~K~E~----sn~------------aLiemaeEr~~~~ke~e~~kkq~ekL 333 (359)
||+-+..++.+++.+..-.-+|.+++..|..+.+. .+- +...+| +......++.++..+++|
T Consensus 10 ~~e~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~~~l~Gd~~~~~TKVlH~~~NPa~~a--~~~~~~~~e~Lq~E~erL 87 (100)
T 1go4_E 10 SREEADTLRLKVEELEGERSRLEEEKRMLEAQLERRALQGDYDQSRTKVLHMSLNPTSVA--RQRLREDHSQLQAECERL 87 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSCCCTTTEEEEEESSCHHHHH--HHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCccCeeeeecCChHHHH--HHHHHHHHHHHHHHHHHH
Confidence 67777777777777777777777777777666665 111 112233 333568888888888888
Q ss_pred HHHHHHHHH
Q 018258 334 ESLCRSLQA 342 (359)
Q Consensus 334 e~LCRaLQ~ 342 (359)
....+.|+.
T Consensus 88 r~~v~~lEe 96 (100)
T 1go4_E 88 RGLLRAMER 96 (100)
T ss_dssp HHHHTTCC-
T ss_pred HHHHHHHhc
Confidence 888888765
No 29
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=65.28 E-value=52 Score=26.39 Aligned_cols=55 Identities=15% Similarity=0.149 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHH
Q 018258 238 QVSQLLATEKNLRLQLTADGEKFQQFQDALVKSNEVFETFKQEIEKMAKSIKELK 292 (359)
Q Consensus 238 qv~~l~~tE~eLr~QL~~Y~eKF~EFQdTL~KSNevF~tFKkEMEKMsKKiKkLE 292 (359)
.|..|...=..|...|..|.+.+.+....|.-+....+.--.++.-++.+|.-||
T Consensus 45 Ei~sL~kk~~~lE~eld~~ee~L~ea~~kLee~ek~~~~aE~ev~~L~RriqllE 99 (101)
T 3u1c_A 45 DIVQLEKQLRVTEDSRDQVLEELHKSEDSLLFAEENAAKAESEVASLNRRIQLVE 99 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3444444444455555566666666666666665555555667777777776665
No 30
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=64.47 E-value=1.1e+02 Score=29.84 Aligned_cols=57 Identities=19% Similarity=0.159 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHH
Q 018258 250 RLQLTADGEKFQQFQDALVKSNEVFETFKQEIEKMAKSIKELKKENAFLKSKCEKSDFTLIELV 313 (359)
Q Consensus 250 r~QL~~Y~eKF~EFQdTL~KSNevF~tFKkEMEKMsKKiKkLEKEn~~~k~K~E~sn~aLiema 313 (359)
...+.-|.+-+.+.|.-..+ ++.+|+.+...+.+|+.++..++.-.+..+..+.++-
T Consensus 413 ~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (487)
T 3oja_A 413 RAIVKRYEEMYVEQQSVQNN-------AIRDWDMYQHKETQLAEENARLKKLNGEADLALASAN 469 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhc-------chhhhhhhhhHHHHHHHHhhhhhhhhhhhhhhhHhcc
Confidence 33444455555555554444 4555555555555555555555555555555544443
No 31
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=61.59 E-value=93 Score=28.05 Aligned_cols=39 Identities=23% Similarity=0.211 Sum_probs=23.3
Q ss_pred cHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHhhhHh
Q 018258 270 SNEVFETFKQEIEKMAKSIK-------ELKKENAFLKSKCEKSDFT 308 (359)
Q Consensus 270 SNevF~tFKkEMEKMsKKiK-------kLEKEn~~~k~K~E~sn~a 308 (359)
|.++=.-+-.+++...|+++ +|.-|...|+.|++.+...
T Consensus 40 SrELE~ELE~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~~~~e 85 (189)
T 2v71_A 40 SRELEAELEAQLVQAEQRNRDLQADNQRLKYEVEALKEKLEHQYAQ 85 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444455555555444 4556677888888777554
No 32
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=60.41 E-value=3.4e+02 Score=34.14 Aligned_cols=21 Identities=14% Similarity=0.449 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHhHHH
Q 018258 92 KEFLEFTLKYQQVLAERDAAM 112 (359)
Q Consensus 92 r~~~~~~~~~~qv~~Er~kai 112 (359)
+-+++|..-|..+..++...+
T Consensus 1895 ~syLeli~~y~~ll~~K~~el 1915 (3245)
T 3vkg_A 1895 RHYLDFINQVVLLINEKRDQL 1915 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 458888888888877666543
No 33
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=59.94 E-value=48 Score=27.59 Aligned_cols=26 Identities=27% Similarity=0.193 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHh
Q 018258 283 KMAKSIKELKKENAFLKSKCEKSDFT 308 (359)
Q Consensus 283 KMsKKiKkLEKEn~~~k~K~E~sn~a 308 (359)
.+.-++.+|.-|...|+.|+..+...
T Consensus 7 dL~~~~~~L~~E~e~~k~K~~~~~~e 32 (111)
T 2v66_B 7 DLQADNQRLKYEVEALKEKLEHQYAQ 32 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34557778899999999999887654
No 34
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=57.75 E-value=68 Score=25.32 Aligned_cols=74 Identities=16% Similarity=0.234 Sum_probs=64.2
Q ss_pred HHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHHHHHHHHHHHH
Q 018258 258 EKFQQFQDALVKSNEVFETFKQEIEKMAKSIKELKKENAFLKSKCEKSDFTLIELVEERERMKKQLEKSKNQKE 331 (359)
Q Consensus 258 eKF~EFQdTL~KSNevF~tFKkEMEKMsKKiKkLEKEn~~~k~K~E~sn~aLiemaeEr~~~~ke~e~~kkq~e 331 (359)
+=|+++..-+...=++..-.+-|++..--+.-.|..++..++.-.+..+...-.+-+|+..|...+..+-.+++
T Consensus 6 ElleqLE~KIq~avdtI~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl~~LLgk~e 79 (81)
T 2jee_A 6 EVFEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALLGRME 79 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 45777777777777888888999999999999999999999999999999999999999999999988776653
No 35
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=51.95 E-value=1.8e+02 Score=28.32 Aligned_cols=53 Identities=17% Similarity=0.107 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHH
Q 018258 288 IKELKKENAFLKSKCEKSDFTLIELVEERERMKKQLEKSKNQ----KEKLESLCRSL 340 (359)
Q Consensus 288 iKkLEKEn~~~k~K~E~sn~aLiemaeEr~~~~ke~e~~kkq----~ekLe~LCRaL 340 (359)
.+++|.|....++-|+.+...+-.+.+++..+++.+..+.++ .++|..+|+.=
T Consensus 423 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 479 (487)
T 3oja_A 423 YVEQQSVQNNAIRDWDMYQHKETQLAEENARLKKLNGEADLALASANATLQELVVRE 479 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcchhhhhhhhhHHHHHHHHhhhhhhhhhhhhhhhHhcccHHHHHHHHH
Confidence 333444554555555555555666666666666666554443 44666666653
No 36
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=48.92 E-value=1.1e+02 Score=24.90 Aligned_cols=77 Identities=23% Similarity=0.249 Sum_probs=46.8
Q ss_pred HhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHH
Q 018258 216 LKIKQHEEKLVQEQSQMKLYAE---QVSQLLATEKNLRLQLTADGEKFQQFQDALVKSNEVFETFKQEIEKMAKSIKELK 292 (359)
Q Consensus 216 AKleq~~e~~~~Ek~q~k~l~e---qv~~l~~tE~eLr~QL~~Y~eKF~EFQdTL~KSNevF~tFKkEMEKMsKKiKkLE 292 (359)
++|..+.+.+..-...+..+.+ +......+=.-|+.|+.+|.+-|. .=|..-|+|......|.
T Consensus 9 ~~L~~aEeaL~~kq~~id~lke~~~q~~~~~E~i~vLk~Qv~IY~~DF~--------------aERadREkl~~eKe~L~ 74 (94)
T 3jsv_C 9 QQLQQAEEALVAKQELIDKLKEEAEQHKIVMETVPVLKAQADIYKADFQ--------------AERHAREKLVEKKEYLQ 74 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHTTSHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHhHHHHHH
Confidence 3444444444433333333433 333344566789999999987665 34566788888888888
Q ss_pred HHHHHHHHHHHhhh
Q 018258 293 KENAFLKSKCEKSD 306 (359)
Q Consensus 293 KEn~~~k~K~E~sn 306 (359)
.....+.+.....+
T Consensus 75 ~ql~~lq~q~~~L~ 88 (94)
T 3jsv_C 75 EQLEQLQREFNKLK 88 (94)
T ss_dssp HHHHHHHHTTC---
T ss_pred HHHHHHHHHHHHHH
Confidence 88888877755544
No 37
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=47.91 E-value=1.3e+02 Score=25.53 Aligned_cols=28 Identities=18% Similarity=0.241 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018258 315 ERERMKKQLEKSKNQKEKLESLCRSLQA 342 (359)
Q Consensus 315 Er~~~~ke~e~~kkq~ekLe~LCRaLQ~ 342 (359)
+-....++++.++.++..|+.=..-|++
T Consensus 104 k~e~~~~e~~~l~~~~~~l~~~~~~le~ 131 (138)
T 3hnw_A 104 KAESSAKEIKELKSEINKYQKNIVKLET 131 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444444443
No 38
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=47.05 E-value=1.2e+02 Score=25.14 Aligned_cols=93 Identities=16% Similarity=0.196 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhH----HHHHH
Q 018258 239 VSQLLATEKNLRLQLTADGEKFQQFQDALVKSNEVFETFKQEIEKMAKSIKELKKENAFLKSKCEKSDFTL----IELVE 314 (359)
Q Consensus 239 v~~l~~tE~eLr~QL~~Y~eKF~EFQdTL~KSNevF~tFKkEMEKMsKKiKkLEKEn~~~k~K~E~sn~aL----iemae 314 (359)
+..|..+-..|+.||.--.+=+.+.++.++.+++ ..+.++..+.-.+..-|..-..++..|..+..++ -.++.
T Consensus 8 ~~~lq~~~~ql~~qL~k~~~~r~~Le~~w~~k~E---~~k~qV~~L~~~~q~sE~~L~~Lqq~fsq~q~~vq~qL~~Lt~ 84 (112)
T 1x79_B 8 VKKLQLMLRQANDQLEKTMKDKQELEDFIKQSSE---DSSHQISALVLRAQASEILLEELQQGLSQAKRDVQEQMAVLMQ 84 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444455666666666666666666666654 4566777777777777777777777776555544 34455
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 018258 315 ERERMKKQLEKSKNQKEKLE 334 (359)
Q Consensus 315 Er~~~~ke~e~~kkq~ekLe 334 (359)
.|.....++..++.-.+-|.
T Consensus 85 ~Re~V~~eL~rLQ~eNd~L~ 104 (112)
T 1x79_B 85 SREQVSEELVRLQKDNDSLQ 104 (112)
T ss_dssp HHHHHHTC------------
T ss_pred HHHHHHHHHHHHHhhccchh
Confidence 55555555555555554443
No 39
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=46.95 E-value=43 Score=24.22 Aligned_cols=39 Identities=8% Similarity=0.332 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHH
Q 018258 247 KNLRLQLTADGEKFQQFQDALVKSNEVFETFKQEIEKMA 285 (359)
Q Consensus 247 ~eLr~QL~~Y~eKF~EFQdTL~KSNevF~tFKkEMEKMs 285 (359)
.+|+.++..-+.++..+.++|..+.+-....+.++++++
T Consensus 12 ~~l~~~l~~L~~rN~rL~~~L~~AR~el~~Lkeele~La 50 (51)
T 3m91_A 12 HQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRLG 50 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 368888888899999999999999998889998888875
No 40
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=46.09 E-value=58 Score=24.07 Aligned_cols=38 Identities=18% Similarity=0.248 Sum_probs=29.9
Q ss_pred HHHHHhHHHHHHHHHHHhhHHHHHHHHhhHHHHHhhHh
Q 018258 112 MAVRDKLESLCRELQRQNKMLMDECKRVSSEGQNLRLD 149 (359)
Q Consensus 112 i~~K~KLE~LCRELQkqNK~lKEE~~~~~~eee~kRke 149 (359)
-.+||-+..||.|..+-++.+.+|-+.+.+-|.--|+-
T Consensus 13 YaLkDqV~eL~qe~k~m~k~lEeEqkARk~LE~~vrk~ 50 (56)
T 2w6b_A 13 YALKDEVQELRQDNKKMKKSLEEEQRARKDLEKLVRKV 50 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 37899999999999999999988877665555555544
No 41
>3sja_C Golgi to ER traffic protein 1; coiled-coil, receptor complex, TA-protein biogenesis, GET PA hydrolase-transport protein complex; 3.00A {Saccharomyces cerevisiae} PDB: 3sjc_C
Probab=44.59 E-value=66 Score=24.46 Aligned_cols=50 Identities=18% Similarity=0.107 Sum_probs=34.7
Q ss_pred hhhhhHHHHHHHHHHHHHH--HHHhHHHHHHHhHHHHHHHHHHHhhHHHHHH
Q 018258 87 TFKSEKEFLEFTLKYQQVL--AERDAAMAVRDKLESLCRELQRQNKMLMDEC 136 (359)
Q Consensus 87 ~~~ler~~~~~~~~~~qv~--~Er~kai~~K~KLE~LCRELQkqNK~lKEE~ 136 (359)
...|.+++.++..+...+- .|-.|..-++-|+.+|-.||+..|+.|--|+
T Consensus 8 ~~~l~~E~~~lk~E~~stSaQDeFAKWaKL~Rk~DKl~~ele~l~~~l~~~~ 59 (65)
T 3sja_C 8 YLAKVKERHELKEFNNSISAQDNYAKWTKNNRKLDSLDKEINNLKDEIQSEN 59 (65)
T ss_dssp HHHHHHHHHHHHHHHTTSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 3444455554444433322 3555789999999999999999999988765
No 42
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=44.58 E-value=68 Score=27.58 Aligned_cols=62 Identities=15% Similarity=0.126 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHHH-HHhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 018258 287 SIKELKKENAFLKSK-CEKSDFTLIELVEERERMKKQLEKSKNQKEKLESLCRSLQAERKQNS 348 (359)
Q Consensus 287 KiKkLEKEn~~~k~K-~E~sn~aLiemaeEr~~~~ke~e~~kkq~ekLe~LCRaLQ~ER~~~~ 348 (359)
...+++.|...|..- |+.+|..+..---++.......+.+..++.--+.+...||.+-..++
T Consensus 68 ~~~~ie~ElE~LTasLFeEAN~MVa~ar~~~~~~e~r~~~L~~ql~e~e~ll~~lq~QL~~LK 130 (135)
T 2e7s_A 68 EADKLNKEVEDLTASLFDEANNLVADARMEKYAIEILNKRLTEQLREKDMLLDTLTLQLKNLK 130 (135)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHTTTHHHHCC-----------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556677777777654 89999988888788888888888888888888888888888765544
No 43
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=44.31 E-value=1.1e+02 Score=24.80 Aligned_cols=83 Identities=12% Similarity=0.113 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhhHhHHHHHHHHHHHHHHHHHH
Q 018258 248 NLRLQLTADGEKFQQFQDALVKSNEVFETFKQEIEKMAKSIKELKKENAFLKSK-CEKSDFTLIELVEERERMKKQLEKS 326 (359)
Q Consensus 248 eLr~QL~~Y~eKF~EFQdTL~KSNevF~tFKkEMEKMsKKiKkLEKEn~~~k~K-~E~sn~aLiemaeEr~~~~ke~e~~ 326 (359)
.||.+|...-..+..+..-+.+-..-+..=+.-....-....+++.|...|..- |+..|..+..---++.......+.+
T Consensus 9 ~lre~l~~le~~~~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElEeLTasLFeEAN~MVa~ar~e~~~~e~kn~~L 88 (97)
T 2eqb_B 9 QLKEDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFDEANNMVADARKEKYAIEILNKRL 88 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555444444433333333333333335555666666666433 5666666665544555444444444
Q ss_pred HHHH
Q 018258 327 KNQK 330 (359)
Q Consensus 327 kkq~ 330 (359)
+.|+
T Consensus 89 ~~qL 92 (97)
T 2eqb_B 89 TEQL 92 (97)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
No 44
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=44.04 E-value=2.5e+02 Score=27.88 Aligned_cols=19 Identities=16% Similarity=0.127 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 018258 323 LEKSKNQKEKLESLCRSLQ 341 (359)
Q Consensus 323 ~e~~kkq~ekLe~LCRaLQ 341 (359)
+..+..+++.|......|.
T Consensus 114 ~~~~~~~i~~l~~~i~~l~ 132 (409)
T 1m1j_C 114 HIMNSNKITQLKQKIAQLE 132 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHHH
Confidence 3344444444444444443
No 45
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=42.33 E-value=1.7e+02 Score=25.48 Aligned_cols=63 Identities=14% Similarity=0.166 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHHHHHHH-HHhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 018258 285 AKSIKELKKENAFLKSK-CEKSDFTLIELVEERERMKKQLEKSKNQKEKLESLCRSLQAERKQN 347 (359)
Q Consensus 285 sKKiKkLEKEn~~~k~K-~E~sn~aLiemaeEr~~~~ke~e~~kkq~ekLe~LCRaLQ~ER~~~ 347 (359)
.+...+++.|...|..- |+..|..+..---++...+...+.+..++.--+.+...||.+-..+
T Consensus 78 E~~~~~ie~ElEeLTasLFeEAN~MVa~ar~~~~~~e~r~~~L~~ql~e~~~~l~~lq~ql~~L 141 (154)
T 2ocy_A 78 EEEADKLNKEVEDLTASLFDEANNMVADARKEKYAIEILNKRLTEQLREKDTLLDTLTLQLKNL 141 (154)
T ss_dssp HTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667788888888654 8999999998888888899999999999999999999999986544
No 46
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=42.02 E-value=1.7e+02 Score=25.40 Aligned_cols=54 Identities=22% Similarity=0.239 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018258 280 EIEKMAKSIKELKKENAFLKSKCEKSDFTLIELVEERERMKKQLEKSKNQKEKL 333 (359)
Q Consensus 280 EMEKMsKKiKkLEKEn~~~k~K~E~sn~aLiemaeEr~~~~ke~e~~kkq~ekL 333 (359)
-+.++-+.|-+||-+...++.++......|..+..+-..+...+--+.+.+.+|
T Consensus 99 sv~kLEk~id~lEd~L~~~Kek~~~i~~eLd~tl~el~~~~~~~~~~~~~~~~~ 152 (155)
T 2efr_A 99 SVTKLEKSIDDLEDELYAQKLKYKAISEEMKQLEDKVEELLSKNYHLENEVARL 152 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHh
Confidence 355667777777777778888887777777766665554444444444444444
No 47
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=40.55 E-value=1.4e+02 Score=23.79 Aligned_cols=57 Identities=21% Similarity=0.312 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018258 279 QEIEKMAKSIKELKKENAFLKSKCEKSDFTLIELVEERERMKKQLEKSKNQKEKLES 335 (359)
Q Consensus 279 kEMEKMsKKiKkLEKEn~~~k~K~E~sn~aLiemaeEr~~~~ke~e~~kkq~ekLe~ 335 (359)
.|++........|..+-...-+.+-.-...++++..++.-+.-++.-...++++|.+
T Consensus 39 ~el~~le~E~~~L~~eE~~~w~eyn~~~~ql~e~~dE~~Sl~~q~~~~~~qLdkL~K 95 (96)
T 3q8t_A 39 ENLEKVQAEAERLDQEEAQYQREYSEFKRQQLELDDELKSVENQMRYAQMQLDKLKK 95 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 455555555556644333333345666777888888888888888888888888863
No 48
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=40.22 E-value=2.9e+02 Score=27.51 Aligned_cols=38 Identities=24% Similarity=0.290 Sum_probs=18.4
Q ss_pred HHHHHHhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018258 298 LKSKCEKSDFTLIELVEERERMKKQLEKSKNQKEKLES 335 (359)
Q Consensus 298 ~k~K~E~sn~aLiemaeEr~~~~ke~e~~kkq~ekLe~ 335 (359)
|.+++.-....|..-+..-..|..-|+.+..++.+||.
T Consensus 118 Le~~i~~lk~~V~~q~~~ir~Lq~~l~~q~~kiqRLE~ 155 (390)
T 1deq_A 118 LRSRIEILRRKVIEQVQRINLLQKNVRDQLVDMKRLEV 155 (390)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444443333333445555566666666664
No 49
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=39.37 E-value=1.6e+02 Score=24.20 Aligned_cols=53 Identities=23% Similarity=0.298 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHhhHHHHHHHHhhHHHH
Q 018258 92 KEFLEFTLKYQQVLAERDAAMAVRDKLESLCRELQRQNKMLMDECKRVSSEGQ 144 (359)
Q Consensus 92 r~~~~~~~~~~qv~~Er~kai~~K~KLE~LCRELQkqNK~lKEE~~~~~~eee 144 (359)
++++++..++.++..|.++.-......-.=.|||+.....|..||..+..+.+
T Consensus 37 qEYl~LE~~~s~le~e~~rlr~~~~~~~~~v~eLe~everL~~ENq~L~~e~~ 89 (104)
T 3s9g_A 37 KEYLELEKSLSRMEDENNRLRLESKRLDARVRELELELDRLRAENLQLLTENE 89 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666776777666666554333333333345555555555555555544433
No 50
>3r2p_A Apolipoprotein A-I; amphipathic alpha-helix, major protein of high density lipop (HDL), lipid binding, plasma, lipid transport; 2.20A {Homo sapiens} PDB: 1gw3_A 1gw4_A
Probab=39.10 E-value=1.9e+02 Score=24.99 Aligned_cols=19 Identities=26% Similarity=0.380 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 018258 244 ATEKNLRLQLTADGEKFQQ 262 (359)
Q Consensus 244 ~tE~eLr~QL~~Y~eKF~E 262 (359)
..=.+||.+|..|++.|..
T Consensus 155 ~~~e~lk~~l~Py~ee~k~ 173 (185)
T 3r2p_A 155 AHVDALRTHLAPYSDELRQ 173 (185)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhHHHHHH
Confidence 3446788899999877663
No 51
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=38.40 E-value=3e+02 Score=28.70 Aligned_cols=56 Identities=18% Similarity=0.257 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018258 275 ETFKQEIEKMAKSIKELKKENAFLKSKCE-KSDFTLIELVEERERMKKQLEKSKNQKEKLES 335 (359)
Q Consensus 275 ~tFKkEMEKMsKKiKkLEKEn~~~k~K~E-~sn~aLiemaeEr~~~~ke~e~~kkq~ekLe~ 335 (359)
..++.=++++..+|++||.+...-.+-|- -|..++. +..-.+-|+.++||++++.+
T Consensus 134 rvLQsnLedq~~kIQRLEvDIdiqirsCKgsCsr~~~-----~~vd~~sY~~~QKQLeQv~a 190 (562)
T 3ghg_A 134 QLLQKNVRAQLVDMKRLEVDIDIKIRSCRGSCSRALA-----REVDLKDYEDQQKQLEQVIA 190 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTBSCCCC-----CCCCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchhe-----eecchHHHHHHHHHHHHHhh
Confidence 34456688999999999999987666553 2333332 11223456677777766643
No 52
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=37.58 E-value=1.4e+02 Score=23.18 Aligned_cols=65 Identities=18% Similarity=0.154 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 018258 283 KMAKSIKELKKENAFLKSKCEKSDFTLIELVEERERMKKQLEKSKNQKEKLESLCRSLQAERKQN 347 (359)
Q Consensus 283 KMsKKiKkLEKEn~~~k~K~E~sn~aLiemaeEr~~~~ke~e~~kkq~ekLe~LCRaLQ~ER~~~ 347 (359)
+....++.++.+...++.++++.....-++-.....+..+...+..++.-.+..|..|.+.+..+
T Consensus 11 ~~eeEm~~~eeel~~lke~l~k~e~~rkele~~~~~l~~ek~~L~~ql~eaEe~~~~L~~~K~eL 75 (89)
T 3bas_A 11 RQEEEMKEQLKQMDKMKEDLAKTERIKKELEEQNVTLLEQKNDLFGSMKQLEDKVEELLSKNYHL 75 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
No 53
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=35.80 E-value=1.6e+02 Score=23.08 Aligned_cols=70 Identities=16% Similarity=0.138 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018258 179 NEMLRTNLKQLADQYALTEQQYAQKLKQKTLELQIGELKIKQHEEKLVQEQSQMKLYAEQVSQLLATEKNLRLQLTADGE 258 (359)
Q Consensus 179 N~~LreKLK~lieQYElRE~h~~k~lK~KeLE~QL~~AKleq~~e~~~~Ek~q~k~l~eqv~~l~~tE~eLr~QL~~Y~e 258 (359)
+..|+.+|+..+.||. |-|+..+.....-..=-..+..-+..+...+.+|..-+.+|.+
T Consensus 9 eDKLRrrl~E~~~q~q---------------------aEl~sLrrT~~EL~~G~~KL~~mi~~l~~E~~~l~~ni~~lk~ 67 (78)
T 3iv1_A 9 SDKLRWRMKEEMDRAQ---------------------AELNALKRTEEDLKKGHQKLEEMVTRLDQEVAEVDKNIELLKK 67 (78)
T ss_dssp HHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh---------------------HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHhh
Q 018258 259 KFQQFQDALVK 269 (359)
Q Consensus 259 KF~EFQdTL~K 269 (359)
|-.++...|.+
T Consensus 68 K~~EL~~~l~~ 78 (78)
T 3iv1_A 68 KDEELSSALEK 78 (78)
T ss_dssp HHHHHHTTSCC
T ss_pred HHHHHHHHhcC
No 54
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=35.75 E-value=1.8e+02 Score=23.89 Aligned_cols=9 Identities=33% Similarity=0.604 Sum_probs=4.4
Q ss_pred HHHHHHHHH
Q 018258 208 TLELQIGEL 216 (359)
Q Consensus 208 eLE~QL~~A 216 (359)
+|+.+|.++
T Consensus 80 eLe~~l~el 88 (129)
T 2fxo_A 80 QLEAKVKEM 88 (129)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 455544444
No 55
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=35.04 E-value=2.3e+02 Score=24.76 Aligned_cols=33 Identities=21% Similarity=0.246 Sum_probs=26.0
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018258 270 SNEVFETFKQEIEKMAKSIKELKKENAFLKSKC 302 (359)
Q Consensus 270 SNevF~tFKkEMEKMsKKiKkLEKEn~~~k~K~ 302 (359)
=++=..+..-+..-+..+.++|++||..|-.||
T Consensus 101 l~DEl~aLqlq~n~lE~kl~kLq~EN~~LV~RW 133 (152)
T 3a7p_A 101 LNAALISGTIENNVLQQKLSDLKKEHSQLVARW 133 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455666667778899999999999999998
No 56
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=34.75 E-value=1.7e+02 Score=23.12 Aligned_cols=64 Identities=20% Similarity=0.421 Sum_probs=0.0
Q ss_pred HHHHHHhhHHHHHHHHhhHHHHHhhHhHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHH
Q 018258 123 RELQRQNKMLMDECKRVSSEGQNLRLDLSAKFQDAIKDVSIKLEEQKDDCLSQLKENEMLRTNLKQL 189 (359)
Q Consensus 123 RELQkqNK~lKEE~~~~~~eee~kRkelsekFq~tL~dIq~~meE~~~~~~k~~~EN~~LreKLK~l 189 (359)
|-|..+|+.|.-+.......+ ...+...|...|.+...+++.....+..+.-+-..|++-+..|
T Consensus 26 R~LEqqN~~Le~~i~~l~~~~---~~~~~~~ye~~i~~Lr~~i~~~~~ek~~l~~e~dnl~~~~~~~ 89 (93)
T 3s4r_A 26 RFLEQQNKILLAELEQLKGQG---KSRLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRL 89 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhcc---CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 57
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=33.23 E-value=72 Score=22.97 Aligned_cols=34 Identities=26% Similarity=0.380 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018258 271 NEVFETFKQEIEKMAKSIKELKKENAFLKSKCEK 304 (359)
Q Consensus 271 NevF~tFKkEMEKMsKKiKkLEKEn~~~k~K~E~ 304 (359)
..=++..+.|++.+..++..|.+++..++++.++
T Consensus 18 ~~d~eaLk~E~~eLk~k~~~L~~~~~el~~~l~~ 51 (53)
T 2yy0_A 18 NPEIELLRLELAEMKEKYEAIVEENKKLKAKLAQ 51 (53)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3457788899999999999999999888887664
No 58
>1a92_A Delta antigen; leucine zipper, coiled-coil, oligomerization; 1.80A {Hepatitis delta virus} SCOP: h.4.6.1 PDB: 1by0_A
Probab=28.59 E-value=71 Score=23.06 Aligned_cols=25 Identities=32% Similarity=0.418 Sum_probs=21.6
Q ss_pred HHHHHHHhHHHHHHHHHHHhhHHHH
Q 018258 110 AAMAVRDKLESLCRELQRQNKMLMD 134 (359)
Q Consensus 110 kai~~K~KLE~LCRELQkqNK~lKE 134 (359)
+.|..|.|+|.|-|+|-+.++.||.
T Consensus 8 qWv~~Rkk~eeler~lrk~kk~iKk 32 (50)
T 1a92_A 8 QWVSGRKKLEELERDLRKLKKKIKK 32 (50)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5688899999999999988888774
No 59
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=28.24 E-value=2.6e+02 Score=23.24 Aligned_cols=45 Identities=20% Similarity=0.183 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018258 245 TEKNLRLQLTADGEKFQQFQDALVKSNEVFETFKQEIEKMAKSIKELKKENAFLKSKCE 303 (359)
Q Consensus 245 tE~eLr~QL~~Y~eKF~EFQdTL~KSNevF~tFKkEMEKMsKKiKkLEKEn~~~k~K~E 303 (359)
+=.-|+.|+.+|..-|.- =|..-|++...+-.|.-+...+.+...
T Consensus 63 ~I~vLkaQv~IY~~DF~a--------------ERadREkl~~eKe~L~~ql~~Lq~q~~ 107 (110)
T 2v4h_A 63 TVPVLKAQADIYKADFQA--------------ERHAREKLVEKKEYLQEQLEQLQREFN 107 (110)
T ss_dssp HHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHcc--------------chhhHHHHHhHHHHHHHHHHHHHHHHH
Confidence 446789999999877753 345567777777777777777766544
No 60
>1zhc_A Hypothetical protein HP1242; A-helical protein, unknown function; NMR {Helicobacter pylori}
Probab=27.31 E-value=1.3e+02 Score=22.97 Aligned_cols=67 Identities=12% Similarity=0.194 Sum_probs=44.0
Q ss_pred HHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018258 262 QFQDALVKSNEVFETFKQEIEKMAKSIKELKKENAFLKSKCEKSDFTLIELVEERERMKKQLEKSKNQKEKLESL 336 (359)
Q Consensus 262 EFQdTL~KSNevF~tFKkEMEKMsKKiKkLEKEn~~~k~K~E~sn~aLiemaeEr~~~~ke~e~~kkq~ekLe~L 336 (359)
+.-..|..+|.-|..+..+-..+.+.|..+|..... .. .+-.|--+|-.++.++..+-.+-..-.+|
T Consensus 7 d~I~~Lk~~d~~f~~L~~eH~~LD~~I~~le~~~~~-------~~-~l~~LKk~KL~LKDeI~~lL~~~~~~~~~ 73 (76)
T 1zhc_A 7 DEISVLKANNPHFDKIFEKHNQLDDDIKTAEQQNAS-------DA-EVSHMKKQKLKLKDEIHSMIIEYREKQKS 73 (76)
T ss_dssp HHHHHSTTTSTTHHHHHHHHHHHHHHHHHHHTTCSC-------HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhcCCCC-------hH-HHHHHHHHHHHhHHHHHHHHHHHHHhccc
Confidence 334556778999999999999999999888754321 11 56666666766666666554444443443
No 61
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=26.37 E-value=2.2e+02 Score=21.86 Aligned_cols=60 Identities=17% Similarity=0.191 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH
Q 018258 282 EKMAKSIKELKKENAFLKSKCEKSDFTLIELVEERERMKKQL----EKSKNQKEKLESLCRSLQ 341 (359)
Q Consensus 282 EKMsKKiKkLEKEn~~~k~K~E~sn~aLiemaeEr~~~~ke~----e~~kkq~ekLe~LCRaLQ 341 (359)
..++.+++.+|-+|..|..+.......|-+--.++..+..++ +.+--||..|--|-+.|.
T Consensus 3 ~~~~~kLq~~E~~N~~Le~~v~~le~~Le~s~~~q~~~~~Elk~~~e~Ld~KI~eL~elrq~La 66 (72)
T 3cve_A 3 HNSHMKLQEVEIRNKDLEGQLSEMEQRLEKSQSEQDAFRSNLKTLLEILDGKIFELTELRDNLA 66 (72)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 357889999999999999999999999998887777766665 456667777776666554
No 62
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=25.98 E-value=2.6e+02 Score=22.62 Aligned_cols=29 Identities=10% Similarity=0.155 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHhH
Q 018258 281 IEKMAKSIKELKKENAFLKSKCEKSDFTL 309 (359)
Q Consensus 281 MEKMsKKiKkLEKEn~~~k~K~E~sn~aL 309 (359)
.++....+..|+.+...|...+......|
T Consensus 7 ~e~lre~l~~le~~~~~~~~e~~~L~~~l 35 (97)
T 2eqb_B 7 YNQLKEDYNTLKRELSDRDDEVKRLREDI 35 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 33333444444444444444444433333
No 63
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=25.03 E-value=1.9e+02 Score=22.82 Aligned_cols=40 Identities=18% Similarity=0.091 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC
Q 018258 311 ELVEERERMKKQLEKSKNQKEKLESLCRSLQAERKQNSVG 350 (359)
Q Consensus 311 emaeEr~~~~ke~e~~kkq~ekLe~LCRaLQ~ER~~~~~~ 350 (359)
++..+...+..+-..|+.+++.|..-...|..--.+.|++
T Consensus 40 e~~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ll~~~p~~ 79 (87)
T 1hjb_A 40 ETQHKVLELTAENERLQKKVEQLSRELSTLRNLFKQLPEP 79 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcHH
Confidence 3333334444444444444444444444444443444444
No 64
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=23.27 E-value=2.7e+02 Score=21.73 Aligned_cols=63 Identities=24% Similarity=0.274 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
Q 018258 280 EIEKMAKSIKELKKENAFLKSKCEKSDFTLIELVEERERMKKQL----EKSKNQKEKLESLCRSLQA 342 (359)
Q Consensus 280 EMEKMsKKiKkLEKEn~~~k~K~E~sn~aLiemaeEr~~~~ke~----e~~kkq~ekLe~LCRaLQ~ 342 (359)
+-+.++.+++.+|-+|..|..+.......|-+--.++..+..++ +.+--||..|--|=..|..
T Consensus 7 e~e~~~~klq~~E~rN~~Le~~v~~le~~Le~s~~~q~~~~~Elk~l~e~Ld~KI~eL~elRqgLak 73 (79)
T 3cvf_A 7 EREETQQKVQDLETRNAELEHQLRAMERSLEEARAERERARAEVGRAAQLLDVSLFELSELREGLAR 73 (79)
T ss_dssp ---CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 34667889999999999999999999999998888777776665 4466677777766665543
No 65
>1ez3_A Syntaxin-1A; three helix bundle, endocytosis/exocytosis complex; 1.90A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 1br0_A 3lg7_A*
Probab=23.24 E-value=2.8e+02 Score=21.88 Aligned_cols=26 Identities=19% Similarity=0.439 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHh
Q 018258 180 EMLRTNLKQLADQYALTEQQYAQKLK 205 (359)
Q Consensus 180 ~~LreKLK~lieQYElRE~h~~k~lK 205 (359)
..|+.+|+.++..|..-+..|..-.+
T Consensus 98 ~~L~~kf~e~m~~y~~~q~~yre~~k 123 (127)
T 1ez3_A 98 STLSRKFVEVMSEYNATQSDYRERCK 123 (127)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46999999999999987777765544
No 66
>3k66_A Beta-amyloid-like protein; X-RAY amyloid precursor protein, heparin binding, alternative splicing, developmental protein, differentiation; 2.70A {Caenorhabditis elegans} PDB: 3k6b_A*
Probab=22.64 E-value=3.3e+02 Score=25.38 Aligned_cols=46 Identities=11% Similarity=0.301 Sum_probs=29.6
Q ss_pred HhHHHHHHHHHHHhhHHHHHHHHhhHHHHHhhHhHHHHHHHHHHHH
Q 018258 116 DKLESLCRELQRQNKMLMDECKRVSSEGQNLRLDLSAKFQDAIKDV 161 (359)
Q Consensus 116 ~KLE~LCRELQkqNK~lKEE~~~~~~eee~kRkelsekFq~tL~dI 161 (359)
.|...+-+|.+..-...++--+.=.+-.+.-+++|+++||.++...
T Consensus 31 ~km~kVMkEW~Eae~q~k~l~kaDpk~Ae~~k~~m~~rFQ~~v~sL 76 (239)
T 3k66_A 31 KKVDKVMKEWGDLETRYNEQKAKDPKGAEKFKSQMNARFQKTVSSL 76 (239)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhccccCHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555544434446778999999999998544
No 67
>2d1l_A Metastasis suppressor protein 1; IRSP53, actin binding, IMD, protein binding; HET: MSE; 1.85A {Mus musculus}
Probab=21.23 E-value=5e+02 Score=24.09 Aligned_cols=67 Identities=18% Similarity=0.244 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 018258 274 FETFKQEIEKMAKSIKELKKENAFLKSKC-EKSDFTLIELVEERERMKKQLEKSKNQKEKLESLCRSLQAERK 345 (359)
Q Consensus 274 F~tFKkEMEKMsKKiKkLEKEn~~~k~K~-E~sn~aLiemaeEr~~~~ke~e~~kkq~ekLe~LCRaLQ~ER~ 345 (359)
|..++.|+.+.+..+.+++|...---... ...+..+..-+.+-+....+++.+.+ .+++++|-.||+
T Consensus 133 ~k~~r~elkk~~~~~~k~qkK~rk~~~~gk~~~~~~l~~a~q~v~~~~~~le~~~~-----~~~r~AL~EERr 200 (253)
T 2d1l_A 133 YKKARQEIKKKSSDTLKLQKKAKKVDAQGRGDIQPQLDSALQDVNDKYLLLEETEK-----QAVRKALIEERG 200 (253)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSSCGGGTTTTSHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHhccccccCCCcchHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHH
Confidence 66777788777777777775431100001 11222333333444444555555544 367777777765
No 68
>2d8d_A Aroag, phospho-2-dehydro-3-deoxyheptonate aldolase/chori mutase; chorismate, dimer, structural genomics, NPPSFA; 1.15A {Thermus thermophilus} SCOP: a.130.1.1 PDB: 2d8e_A
Probab=21.01 E-value=2e+02 Score=21.89 Aligned_cols=36 Identities=14% Similarity=0.360 Sum_probs=31.9
Q ss_pred HHHHHHHHHhhhHhHHHHHHHHHHHHHHHHHHHHHH
Q 018258 295 NAFLKSKCEKSDFTLIELVEERERMKKQLEKSKNQK 330 (359)
Q Consensus 295 n~~~k~K~E~sn~aLiemaeEr~~~~ke~e~~kkq~ 330 (359)
...++...+..|..|+++..+|..+-.++..++...
T Consensus 5 L~~lR~~ID~iD~~l~~Ll~~R~~~~~~i~~~K~~~ 40 (90)
T 2d8d_A 5 IQALRKEVDRVNREILRLLSERGRLVQEIGRLQTEL 40 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 457899999999999999999999999998887653
No 69
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=20.99 E-value=2.2e+02 Score=27.46 Aligned_cols=17 Identities=12% Similarity=0.319 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHH
Q 018258 321 KQLEKSKNQKEKLESLC 337 (359)
Q Consensus 321 ke~e~~kkq~ekLe~LC 337 (359)
..|..++.++..|+..|
T Consensus 40 ~~i~~l~~~i~~l~~~~ 56 (323)
T 1lwu_C 40 QFVTRLQQQLVDIRQTC 56 (323)
T ss_dssp HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444555555444
No 70
>3tkl_B LIDA protein, substrate of the DOT/ICM system; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Legionella pneumophila}
Probab=20.98 E-value=97 Score=28.91 Aligned_cols=77 Identities=21% Similarity=0.267 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc--------HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
Q 018258 234 LYAEQVSQLLATEKNLRLQLTADGEKFQQFQDALVKS--------NEVFETFKQEIEKMAK---SIKELKKENAFLKSKC 302 (359)
Q Consensus 234 ~l~eqv~~l~~tE~eLr~QL~~Y~eKF~EFQdTL~KS--------NevF~tFKkEMEKMsK---KiKkLEKEn~~~k~K~ 302 (359)
.|..++..|-++-+.|...-+.|-.-.++|...+.-+ |+...-|-++-|+.+. ++..-++|...|..|+
T Consensus 39 ~L~~rl~kLE~qq~~lt~KY~~Ye~sL~eF~~~sd~yeal~~e~ine~i~~~~~~se~~T~imEs~p~DeeEa~kLlhKh 118 (267)
T 3tkl_B 39 ELEKKLDKLERQGKDLEDKYKTYEENLEGFEKLLTDSEELSLSEINEKMKAFSKDSEKLTQLMEKHKGDEKTVQSLQREH 118 (267)
T ss_dssp ------------------------------------CCCCCHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhcCHHHHHHHHHHHHhhhHHHHHHHhcCcccHHHHHHHHHHh
Confidence 3444555555566677777788888888887655433 4445555555333222 2233345555555555
Q ss_pred HhhhHhHH
Q 018258 303 EKSDFTLI 310 (359)
Q Consensus 303 E~sn~aLi 310 (359)
-++|..|.
T Consensus 119 ~~~~~Kla 126 (267)
T 3tkl_B 119 HDIKAKLA 126 (267)
T ss_dssp HHHHHHHH
T ss_pred cccchhhh
Confidence 55554443
No 71
>3sjb_C Golgi to ER traffic protein 1; coiled-coil, receptor complex, TA-protein biogenesis, GET PA hydrolase-transport protein complex; 3.30A {Saccharomyces cerevisiae}
Probab=20.58 E-value=3e+02 Score=22.18 Aligned_cols=53 Identities=21% Similarity=0.150 Sum_probs=37.1
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHH--HHHhHHHHHHHhHHHHHHHHHHHhhHHHHH
Q 018258 83 SSKRTFKSEKEFLEFTLKYQQVL--AERDAAMAVRDKLESLCRELQRQNKMLMDE 135 (359)
Q Consensus 83 ~~k~~~~ler~~~~~~~~~~qv~--~Er~kai~~K~KLE~LCRELQkqNK~lKEE 135 (359)
..+....|.++++++..+...+- .|-.|..-++-|+.+|-.||++.|+.|...
T Consensus 21 ~a~~~~~lk~E~~~lk~E~~stSaQDeFAKWaKL~Rk~DKl~~ele~l~~~l~~~ 75 (93)
T 3sjb_C 21 LSKKYLAKVKERHELKEFNNSISAQDNYAKWTKNNRKLDSLDKEINNLKDEIQSE 75 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSCTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555566665555444332 355678999999999999999999888765
Done!