Query 018258
Match_columns 359
No_of_seqs 125 out of 155
Neff 4.6
Searched_HMMs 13730
Date Mon Mar 25 12:25:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018258.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/018258hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1ivsa1 a.2.7.3 (A:797-862) Va 51.8 32 0.0023 23.5 7.9 28 277-304 2-29 (66)
2 d1seta1 a.2.7.1 (A:1-110) Sery 37.6 71 0.0052 23.4 10.1 44 315-358 65-110 (110)
3 d2ap3a1 a.24.27.1 (A:12-196) H 33.5 78 0.0057 22.7 17.7 70 275-344 112-181 (185)
4 d2oa5a1 d.362.1.1 (A:7-102) Un 26.6 23 0.0017 27.0 3.3 25 281-305 4-28 (96)
5 d1gs9a_ a.24.1.1 (A:) Apolipop 26.5 1.3E+02 0.0092 22.9 10.2 24 145-168 34-57 (144)
6 d1ybza1 a.130.1.1 (A:2-75) mon 24.1 70 0.0051 22.2 5.5 36 295-330 3-38 (74)
7 d1ez3a_ a.47.2.1 (A:) Syntaxin 22.0 1.4E+02 0.01 21.9 12.2 99 91-205 16-121 (124)
8 d2d8da1 a.130.1.1 (A:3-82) Cho 19.2 1.1E+02 0.0077 21.1 5.6 35 296-330 4-38 (80)
9 d1ecma_ a.130.1.1 (A:) Chorism 17.7 1.1E+02 0.0078 21.5 5.5 34 296-329 4-37 (91)
10 d1nlwa_ a.38.1.1 (A:) Mad prot 14.2 1.8E+02 0.013 19.8 5.9 37 266-302 41-77 (79)
No 1
>d1ivsa1 a.2.7.3 (A:797-862) Valyl-tRNA synthetase (ValRS) C-terminal domain {Thermus thermophilus [TaxId: 274]}
Probab=51.76 E-value=32 Score=23.48 Aligned_cols=28 Identities=18% Similarity=0.088 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018258 277 FKQEIEKMAKSIKELKKENAFLKSKCEK 304 (359)
Q Consensus 277 FKkEMEKMsKKiKkLEKEn~~~k~K~E~ 304 (359)
+-.|+.++.|++.+++++...+..|..+
T Consensus 2 ~~~E~~RL~K~l~kl~~~i~~~~~kL~N 29 (66)
T d1ivsa1 2 VEEWRRRQEKRLKELLALAERSQRKLAS 29 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 3579999999999999999999999643
No 2
>d1seta1 a.2.7.1 (A:1-110) Seryl-tRNA synthetase (SerRS) {Thermus thermophilus, strain hb27 [TaxId: 274]}
Probab=37.61 E-value=71 Score=23.42 Aligned_cols=44 Identities=20% Similarity=0.177 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC--CCCCCCCCCCC
Q 018258 315 ERERMKKQLEKSKNQKEKLESLCRSLQAERKQN--SVGSNNSDSAP 358 (359)
Q Consensus 315 Er~~~~ke~e~~kkq~ekLe~LCRaLQ~ER~~~--~~~~~~~~~~~ 358 (359)
++..+..++..+..++..|+.--..++.+.... .-+++..++||
T Consensus 65 ~~~~l~~~~k~lk~~i~~le~~~~~~~~~l~~~ll~iPNi~~~~VP 110 (110)
T d1seta1 65 EKEALIARGKALGEEAKRLEEALREKEARLEALLLQVPLPPWPGAP 110 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCTTSC
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCccCc
Confidence 345566677778888888888888888887653 33455555554
No 3
>d2ap3a1 a.24.27.1 (A:12-196) Hypothetical protein MW0975 (SA0943) {Staphylococcus aureus [TaxId: 1280]}
Probab=33.50 E-value=78 Score=22.66 Aligned_cols=70 Identities=17% Similarity=0.161 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018258 275 ETFKQEIEKMAKSIKELKKENAFLKSKCEKSDFTLIELVEERERMKKQLEKSKNQKEKLESLCRSLQAER 344 (359)
Q Consensus 275 ~tFKkEMEKMsKKiKkLEKEn~~~k~K~E~sn~aLiemaeEr~~~~ke~e~~kkq~ekLe~LCRaLQ~ER 344 (359)
......++.+...+..+......+..........+-.+-.....+...+..+...+..+....+.++.++
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ek 181 (185)
T d2ap3a1 112 KEKYKLHSDYAKAYKKAVNSEKTLFKYLNQNDATQQGVNEKSKAIEQNYKKLKEVSDKYTKVLNKVQKEK 181 (185)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333444444455555555555555555555555555555555555555556666666666666665554
No 4
>d2oa5a1 d.362.1.1 (A:7-102) Uncharacterized protein BQLF2 {Murid herpesvirus 4 [TaxId: 33708]}
Probab=26.56 E-value=23 Score=26.97 Aligned_cols=25 Identities=44% Similarity=0.542 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Q 018258 281 IEKMAKSIKELKKENAFLKSKCEKS 305 (359)
Q Consensus 281 MEKMsKKiKkLEKEn~~~k~K~E~s 305 (359)
||.|.+.+-+|+-||..||++.-.+
T Consensus 4 ~EeLaaeL~rL~~ENk~LKkkl~~~ 28 (96)
T d2oa5a1 4 YEEMVKEVERLKLENKTLKQKVKSS 28 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 8999999999999999999997664
No 5
>d1gs9a_ a.24.1.1 (A:) Apolipoprotein E {Human (Homo sapiens), E4 [TaxId: 9606]}
Probab=26.49 E-value=1.3e+02 Score=22.89 Aligned_cols=24 Identities=17% Similarity=0.291 Sum_probs=13.8
Q ss_pred HhhHhHHHHHHHHHHHHHHHHHhh
Q 018258 145 NLRLDLSAKFQDAIKDVSIKLEEQ 168 (359)
Q Consensus 145 ~kRkelsekFq~tL~dIq~~meE~ 168 (359)
+-+++|...++.++..++.++++-
T Consensus 34 el~~el~~~l~e~~~~l~~~~~~l 57 (144)
T d1gs9a_ 34 QVTQELRALMDETMKELKAYKSEL 57 (144)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666666666666665544
No 6
>d1ybza1 a.130.1.1 (A:2-75) mono-domain chorismate mutase {Pyrococcus furiosus [TaxId: 2261]}
Probab=24.06 E-value=70 Score=22.18 Aligned_cols=36 Identities=22% Similarity=0.363 Sum_probs=30.3
Q ss_pred HHHHHHHHHhhhHhHHHHHHHHHHHHHHHHHHHHHH
Q 018258 295 NAFLKSKCEKSDFTLIELVEERERMKKQLEKSKNQK 330 (359)
Q Consensus 295 n~~~k~K~E~sn~aLiemaeEr~~~~ke~e~~kkq~ 330 (359)
-..|+.+.+..|..|+++..+|...-.++..++++.
T Consensus 3 L~~lR~~ID~iD~~i~~Ll~~R~~~~~~I~~~K~~~ 38 (74)
T d1ybza1 3 LKLLRKEIDKIDNQIISLLKKRLEIAQAIGKIKKEL 38 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 356888899999999999999999999988776653
No 7
>d1ez3a_ a.47.2.1 (A:) Syntaxin 1A N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=22.02 E-value=1.4e+02 Score=21.88 Aligned_cols=99 Identities=12% Similarity=0.196 Sum_probs=54.5
Q ss_pred hHHHHHHHHHHHHHHHHHhHHH-------HHHHhHHHHHHHHHHHhhHHHHHHHHhhHHHHHhhHhHHHHHHHHHHHHHH
Q 018258 91 EKEFLEFTLKYQQVLAERDAAM-------AVRDKLESLCRELQRQNKMLMDECKRVSSEGQNLRLDLSAKFQDAIKDVSI 163 (359)
Q Consensus 91 er~~~~~~~~~~qv~~Er~kai-------~~K~KLE~LCRELQkqNK~lKEE~~~~~~eee~kRkelsekFq~tL~dIq~ 163 (359)
..++..+..-...+..-|.+++ .++..|+.+-.+..+..+.|+...+.+...-+.. . .
T Consensus 16 r~~I~~i~~~v~~i~~~~~~~l~~~~~~~~~~~~l~~~~~~i~~~a~~ik~~Lk~l~~~~~~~-----~----------~ 80 (124)
T d1ez3a_ 16 RGFIDKIAENVEEVKRKHSAILASPNPDEKTKEELEELMSDIKKTANKVRSKLKSIEQSIEQE-----E----------G 80 (124)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----H----------T
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-----h----------c
Confidence 3445555555555555555554 3477777777777777777776655432211000 0 0
Q ss_pred HHHhhhhhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHh
Q 018258 164 KLEEQKDDCLSQLKENEMLRTNLKQLADQYALTEQQYAQKLK 205 (359)
Q Consensus 164 ~meE~~~~~~k~~~EN~~LreKLK~lieQYElRE~h~~k~lK 205 (359)
.-......+.+ ..--..|..+|+.++..|..-+..|..-.+
T Consensus 81 ~~~~s~~~Rir-~~q~~~L~~kf~e~m~~yq~~q~~yr~~~k 121 (124)
T d1ez3a_ 81 LNRSSADLRIR-KTQHSTLSRKFVEVMSEYNATQSDYRERCK 121 (124)
T ss_dssp TSCCCHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 00000111111 123346999999999999987777765544
No 8
>d2d8da1 a.130.1.1 (A:3-82) Chorismate mutase domain of P-protein {Thermus thermophilus [TaxId: 274]}
Probab=19.24 E-value=1.1e+02 Score=21.14 Aligned_cols=35 Identities=14% Similarity=0.396 Sum_probs=31.0
Q ss_pred HHHHHHHHhhhHhHHHHHHHHHHHHHHHHHHHHHH
Q 018258 296 AFLKSKCEKSDFTLIELVEERERMKKQLEKSKNQK 330 (359)
Q Consensus 296 ~~~k~K~E~sn~aLiemaeEr~~~~ke~e~~kkq~ 330 (359)
..|+.+.+..|..|+.+..+|...-.++..++...
T Consensus 4 ~~lR~~ID~iD~~i~~Ll~~R~~~~~~i~~~K~~~ 38 (80)
T d2d8da1 4 QALRKEVDRVNREILRLLSERGRLVQEIGRLQTEL 38 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 56889999999999999999999999998887754
No 9
>d1ecma_ a.130.1.1 (A:) Chorismate mutase domain of P-protein {Escherichia coli [TaxId: 562]}
Probab=17.67 E-value=1.1e+02 Score=21.53 Aligned_cols=34 Identities=26% Similarity=0.316 Sum_probs=27.1
Q ss_pred HHHHHHHHhhhHhHHHHHHHHHHHHHHHHHHHHH
Q 018258 296 AFLKSKCEKSDFTLIELVEERERMKKQLEKSKNQ 329 (359)
Q Consensus 296 ~~~k~K~E~sn~aLiemaeEr~~~~ke~e~~kkq 329 (359)
..++.+.+..|..|+.+..+|..+-.++..++..
T Consensus 4 ~~lR~~ID~iD~~i~~Ll~~R~~l~~~I~~~K~~ 37 (91)
T d1ecma_ 4 LALREKISALDEKLLALLAERRELAVEVGKAKLL 37 (91)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4577888888888888888888888888776554
No 10
>d1nlwa_ a.38.1.1 (A:) Mad protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=14.18 E-value=1.8e+02 Score=19.76 Aligned_cols=37 Identities=22% Similarity=0.314 Sum_probs=20.2
Q ss_pred HHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018258 266 ALVKSNEVFETFKQEIEKMAKSIKELKKENAFLKSKC 302 (359)
Q Consensus 266 TL~KSNevF~tFKkEMEKMsKKiKkLEKEn~~~k~K~ 302 (359)
+|..+-+.......+...+...+..|.+++..|+.+.
T Consensus 41 iL~~A~~yI~~L~~~~~~l~~~~~~L~~~~~~L~~~l 77 (79)
T d1nlwa_ 41 LLTKAKLHIKKLEDSDRKAVHQIDQLQREQRHLKRQL 77 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4444444555555555555555566666665555543
Done!