Query 018259
Match_columns 359
No_of_seqs 139 out of 1122
Neff 5.7
Searched_HMMs 46136
Date Fri Mar 29 07:29:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018259.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018259hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02886 aminoacyl-tRNA ligase 100.0 2.3E-85 5.1E-90 652.8 29.9 303 57-359 25-327 (389)
2 KOG2713 Mitochondrial tryptoph 100.0 5.1E-83 1.1E-87 603.4 21.8 271 78-359 13-287 (347)
3 COG0180 TrpS Tryptophanyl-tRNA 100.0 7.9E-80 1.7E-84 597.2 24.3 266 77-359 4-275 (314)
4 PRK12284 tryptophanyl-tRNA syn 100.0 1.6E-76 3.4E-81 594.0 25.7 262 79-359 3-274 (431)
5 PRK12283 tryptophanyl-tRNA syn 100.0 3.2E-75 7E-80 580.2 27.3 273 78-357 2-335 (398)
6 PRK00927 tryptophanyl-tRNA syn 100.0 2.7E-75 5.8E-80 573.5 25.3 267 79-358 2-272 (333)
7 PRK12556 tryptophanyl-tRNA syn 100.0 1.4E-74 3.1E-79 567.9 24.9 262 78-359 3-274 (332)
8 PRK12282 tryptophanyl-tRNA syn 100.0 4.4E-72 9.6E-77 550.6 26.3 264 78-358 2-269 (333)
9 TIGR00233 trpS tryptophanyl-tR 100.0 1.2E-71 2.6E-76 546.6 25.0 262 78-358 2-272 (328)
10 cd00806 TrpRS_core catalytic c 100.0 3E-71 6.4E-76 533.2 25.5 262 80-358 1-268 (280)
11 PRK12285 tryptophanyl-tRNA syn 100.0 5.8E-67 1.3E-71 520.0 24.1 252 77-358 65-331 (368)
12 PRK08560 tyrosyl-tRNA syntheta 100.0 1.5E-62 3.3E-67 482.4 21.5 242 76-355 28-295 (329)
13 PTZ00126 tyrosyl-tRNA syntheta 100.0 3E-61 6.5E-66 481.1 19.9 248 76-357 64-340 (383)
14 PTZ00348 tyrosyl-tRNA syntheta 100.0 5E-58 1.1E-62 483.1 24.0 257 77-357 31-314 (682)
15 cd00395 Tyr_Trp_RS_core cataly 100.0 7.6E-57 1.7E-61 431.9 23.2 236 80-358 1-261 (273)
16 PF00579 tRNA-synt_1b: tRNA sy 100.0 1.4E-57 3.1E-62 438.7 13.9 258 76-354 3-272 (292)
17 cd00805 TyrRS_core catalytic c 100.0 6.6E-57 1.4E-61 431.3 18.2 233 79-354 1-252 (269)
18 PLN02486 aminoacyl-tRNA ligase 100.0 3.2E-54 6.9E-59 430.2 24.2 249 76-355 71-340 (383)
19 PRK05912 tyrosyl-tRNA syntheta 100.0 1E-48 2.2E-53 394.4 20.3 238 77-357 32-294 (408)
20 PRK13354 tyrosyl-tRNA syntheta 100.0 1.1E-44 2.4E-49 365.1 19.6 233 76-354 31-288 (410)
21 TIGR00234 tyrS tyrosyl-tRNA sy 100.0 4.2E-43 9.1E-48 350.4 17.4 211 78-317 30-263 (377)
22 KOG2145 Cytoplasmic tryptophan 100.0 1.1E-38 2.4E-43 303.1 11.6 246 76-354 83-352 (397)
23 KOG2144 Tyrosyl-tRNA synthetas 100.0 4.9E-37 1.1E-41 291.6 13.9 212 77-317 33-254 (360)
24 COG0162 TyrS Tyrosyl-tRNA synt 100.0 1.2E-33 2.7E-38 283.1 16.1 213 78-316 32-264 (401)
25 PTZ00348 tyrosyl-tRNA syntheta 100.0 3.6E-31 7.8E-36 279.8 18.5 201 109-354 407-634 (682)
26 KOG2623 Tyrosyl-tRNA synthetas 99.8 1.1E-17 2.4E-22 165.2 14.2 234 78-351 63-328 (467)
27 cd00808 GluRS_core catalytic c 99.6 1.6E-15 3.5E-20 143.6 11.6 172 85-310 8-191 (239)
28 cd00802 class_I_aaRS_core cata 99.5 3.9E-13 8.5E-18 116.6 12.0 63 204-288 78-143 (143)
29 cd00418 GlxRS_core catalytic c 99.1 6.8E-10 1.5E-14 104.9 11.1 169 86-310 9-182 (230)
30 cd00674 LysRS_core_class_I cat 98.7 3E-07 6.6E-12 92.0 16.0 204 78-312 20-306 (353)
31 PRK05710 glutamyl-Q tRNA(Asp) 98.6 1.5E-07 3.2E-12 92.3 9.4 173 86-288 13-241 (299)
32 PRK00750 lysK lysyl-tRNA synth 98.6 3.3E-07 7.2E-12 95.8 11.4 65 215-305 233-304 (510)
33 PRK01406 gltX glutamyl-tRNA sy 98.5 1.2E-06 2.6E-11 90.9 12.5 192 86-310 12-280 (476)
34 PRK14895 gltX glutamyl-tRNA sy 98.5 1.2E-06 2.6E-11 91.4 11.5 197 80-310 4-269 (513)
35 TIGR03838 queuosine_YadB gluta 98.3 5.8E-06 1.3E-10 80.1 12.0 174 86-289 8-235 (272)
36 TIGR00464 gltX_bact glutamyl-t 98.3 7.3E-06 1.6E-10 85.0 13.3 191 86-310 9-270 (470)
37 COG0008 GlnS Glutamyl- and glu 98.2 4.4E-06 9.6E-11 86.5 9.5 179 81-289 10-256 (472)
38 cd00807 GlnRS_core catalytic c 98.2 7.4E-06 1.6E-10 77.9 9.5 157 86-289 9-170 (238)
39 cd02156 nt_trans nucleotidyl t 98.1 1.1E-05 2.4E-10 66.5 8.4 56 81-140 2-57 (105)
40 cd09287 GluRS_non_core catalyt 98.1 1.8E-05 4E-10 75.4 10.8 162 82-288 5-171 (240)
41 PLN03233 putative glutamate-tR 98.1 9.6E-06 2.1E-10 84.9 9.4 177 80-288 11-251 (523)
42 PRK12410 glutamylglutaminyl-tR 98.1 1.4E-05 3.1E-10 82.0 10.2 89 86-182 7-104 (433)
43 PRK04156 gltX glutamyl-tRNA sy 98.1 2.4E-05 5.3E-10 82.7 11.5 181 78-288 101-343 (567)
44 PF00749 tRNA-synt_1c: tRNA sy 98.0 6.6E-05 1.4E-09 74.1 12.4 194 86-311 9-275 (314)
45 PTZ00402 glutamyl-tRNA synthet 98.0 8.5E-05 1.8E-09 78.9 13.1 178 80-288 52-293 (601)
46 PLN02907 glutamate-tRNA ligase 98.0 8.1E-05 1.8E-09 81.0 13.0 177 80-288 213-453 (722)
47 PRK12558 glutamyl-tRNA synthet 97.9 1.7E-05 3.7E-10 81.7 6.9 192 85-311 9-270 (445)
48 TIGR00467 lysS_arch lysyl-tRNA 97.9 4.9E-05 1.1E-09 79.7 10.3 81 78-161 19-129 (515)
49 PLN02627 glutamyl-tRNA synthet 97.7 0.0005 1.1E-08 72.3 14.0 198 80-310 47-322 (535)
50 cd00671 ArgRS_core catalytic c 97.7 0.00013 2.9E-09 67.6 8.5 154 82-242 6-185 (212)
51 PLN02859 glutamine-tRNA ligase 97.7 0.00012 2.6E-09 79.7 9.1 177 80-288 264-504 (788)
52 COG1384 LysS Lysyl-tRNA synthe 97.7 4.3E-05 9.3E-10 79.2 4.6 82 77-161 19-132 (521)
53 PF01921 tRNA-synt_1f: tRNA sy 97.6 0.00017 3.6E-09 72.5 8.4 81 215-322 233-321 (360)
54 PRK01611 argS arginyl-tRNA syn 97.6 0.00023 5.1E-09 74.3 9.4 192 80-303 115-339 (507)
55 cd00668 Ile_Leu_Val_MetRS_core 97.5 0.00077 1.7E-08 65.9 11.2 64 86-150 10-100 (312)
56 PRK00260 cysS cysteinyl-tRNA s 97.5 0.0013 2.9E-08 68.1 12.3 73 78-150 23-110 (463)
57 cd00812 LeuRS_core catalytic c 97.4 0.00049 1.1E-08 67.6 8.2 65 86-150 10-87 (314)
58 cd00672 CysRS_core catalytic c 97.1 0.0051 1.1E-07 57.6 11.1 71 79-149 22-105 (213)
59 PRK05347 glutaminyl-tRNA synth 97.0 0.0022 4.8E-08 67.8 8.4 94 81-181 30-134 (554)
60 TIGR00440 glnS glutaminyl-tRNA 97.0 0.0018 4E-08 68.1 7.8 90 86-182 8-106 (522)
61 TIGR00463 gltX_arch glutamyl-t 96.9 0.0024 5.2E-08 67.7 7.7 93 80-180 93-196 (560)
62 PRK14703 glutaminyl-tRNA synth 96.9 0.0027 5.9E-08 69.6 8.0 96 80-182 31-137 (771)
63 PTZ00437 glutaminyl-tRNA synth 96.9 0.0026 5.5E-08 67.5 7.5 94 80-181 51-155 (574)
64 TIGR00435 cysS cysteinyl-tRNA 96.3 0.052 1.1E-06 56.5 12.5 72 79-150 23-107 (465)
65 COG0143 MetG Methionyl-tRNA sy 94.2 0.15 3.2E-06 54.4 7.8 84 78-164 6-103 (558)
66 PRK00133 metG methionyl-tRNA s 93.8 0.18 3.8E-06 54.8 7.7 73 78-150 3-89 (673)
67 PF09334 tRNA-synt_1g: tRNA sy 93.3 0.32 7E-06 49.5 8.1 75 86-163 9-96 (391)
68 PLN02224 methionine-tRNA ligas 93.0 0.39 8.4E-06 51.9 8.6 73 78-150 70-156 (616)
69 PLN02610 probable methionyl-tR 91.5 0.64 1.4E-05 51.7 8.3 75 77-151 17-106 (801)
70 PRK12268 methionyl-tRNA synthe 91.1 0.56 1.2E-05 49.5 7.1 71 80-151 5-92 (556)
71 TIGR00234 tyrS tyrosyl-tRNA sy 90.3 0.37 8.1E-06 48.9 4.7 10 333-342 286-295 (377)
72 PRK00390 leuS leucyl-tRNA synt 89.6 1.1 2.4E-05 49.8 8.0 72 78-150 33-119 (805)
73 cd00814 MetRS_core catalytic c 88.4 0.91 2E-05 44.6 5.8 66 86-151 10-88 (319)
74 PRK11893 methionyl-tRNA synthe 87.6 1.4 3E-05 45.8 6.8 66 86-151 11-89 (511)
75 KOG1149 Glutamyl-tRNA syntheta 87.3 0.99 2.1E-05 46.8 5.3 77 79-161 34-118 (524)
76 PRK12267 methionyl-tRNA synthe 86.9 1.1 2.4E-05 48.4 5.8 65 86-150 14-91 (648)
77 cd00818 IleRS_core catalytic c 86.6 1.5 3.2E-05 43.7 6.0 37 86-122 11-52 (338)
78 TIGR00398 metG methionyl-tRNA 86.5 1.4 3E-05 46.4 6.1 65 86-150 9-86 (530)
79 TIGR00396 leuS_bact leucyl-tRN 86.4 2.7 5.8E-05 47.1 8.6 73 78-150 30-116 (842)
80 TIGR00456 argS arginyl-tRNA sy 85.5 0.69 1.5E-05 49.3 3.3 67 217-310 329-396 (566)
81 cd00817 ValRS_core catalytic c 84.9 0.63 1.4E-05 47.1 2.5 37 86-122 11-52 (382)
82 KOG1147 Glutamyl-tRNA syntheta 84.8 2.4 5.2E-05 45.2 6.6 73 80-161 200-276 (712)
83 PRK11893 methionyl-tRNA synthe 83.6 0.53 1.2E-05 48.9 1.4 60 215-299 253-312 (511)
84 PRK05743 ileS isoleucyl-tRNA s 83.1 0.88 1.9E-05 51.3 3.0 58 214-297 543-603 (912)
85 cd00817 ValRS_core catalytic c 82.7 1.6 3.5E-05 44.2 4.4 60 215-299 295-356 (382)
86 PRK14536 cysS cysteinyl-tRNA s 82.5 7.9 0.00017 40.9 9.5 74 77-150 22-119 (490)
87 COG0215 CysS Cysteinyl-tRNA sy 82.2 0.92 2E-05 47.4 2.5 77 205-305 210-292 (464)
88 PRK14900 valS valyl-tRNA synth 81.8 1.2 2.5E-05 51.2 3.3 71 215-310 490-567 (1052)
89 cd00818 IleRS_core catalytic c 81.7 1.2 2.5E-05 44.4 2.9 17 279-299 296-312 (338)
90 COG0495 LeuS Leucyl-tRNA synth 81.6 4.9 0.00011 44.9 7.9 73 77-150 34-121 (814)
91 PLN02563 aminoacyl-tRNA ligase 80.3 9 0.0002 43.7 9.6 74 78-151 111-201 (963)
92 cd00814 MetRS_core catalytic c 79.8 2.1 4.5E-05 42.1 3.9 59 216-299 235-293 (319)
93 PRK12418 cysteinyl-tRNA synthe 79.5 1.6 3.5E-05 44.6 3.2 69 82-150 14-96 (384)
94 PLN02381 valyl-tRNA synthetase 79.0 2.7 5.9E-05 48.3 5.1 59 215-298 607-667 (1066)
95 TIGR00392 ileS isoleucyl-tRNA 78.6 2.5 5.5E-05 47.2 4.6 71 215-311 563-641 (861)
96 PLN02946 cysteine-tRNA ligase 78.4 11 0.00023 40.6 9.0 73 77-149 79-165 (557)
97 PRK12300 leuS leucyl-tRNA synt 77.9 1.3 2.8E-05 49.9 2.1 59 215-299 529-590 (897)
98 PF00133 tRNA-synt_1: tRNA syn 77.3 1.5 3.2E-05 47.1 2.3 60 215-297 513-572 (601)
99 PRK05729 valS valyl-tRNA synth 77.2 1.6 3.6E-05 48.9 2.6 60 215-299 472-533 (874)
100 COG0018 ArgS Arginyl-tRNA synt 76.0 2.7 5.8E-05 45.2 3.7 70 216-308 335-405 (577)
101 PLN02286 arginine-tRNA ligase 75.8 3.4 7.3E-05 44.3 4.4 69 217-305 329-397 (576)
102 PF01406 tRNA-synt_1e: tRNA sy 74.9 2.1 4.6E-05 42.4 2.4 73 78-150 8-94 (300)
103 TIGR03447 mycothiol_MshC cyste 74.7 2.3 5.1E-05 43.8 2.8 69 80-148 39-120 (411)
104 PLN02843 isoleucyl-tRNA synthe 74.6 5.1 0.00011 45.7 5.6 74 78-151 33-136 (974)
105 PRK13208 valS valyl-tRNA synth 74.4 4.3 9.3E-05 45.1 4.9 70 78-147 39-135 (800)
106 PTZ00419 valyl-tRNA synthetase 73.9 4.4 9.5E-05 46.2 4.9 45 78-122 61-111 (995)
107 PRK13208 valS valyl-tRNA synth 73.8 3.1 6.6E-05 46.2 3.6 60 215-299 485-546 (800)
108 TIGR00422 valS valyl-tRNA synt 73.5 8 0.00017 43.3 6.8 45 78-122 34-84 (861)
109 TIGR00395 leuS_arch leucyl-tRN 73.2 2.2 4.7E-05 48.4 2.3 73 215-311 572-650 (938)
110 TIGR00422 valS valyl-tRNA synt 72.6 3.1 6.6E-05 46.6 3.3 60 215-299 477-538 (861)
111 PLN02943 aminoacyl-tRNA ligase 72.0 3.3 7.2E-05 47.1 3.4 71 215-310 535-612 (958)
112 PRK12267 methionyl-tRNA synthe 71.0 2.1 4.5E-05 46.3 1.5 70 216-310 254-328 (648)
113 COG0525 ValS Valyl-tRNA synthe 67.0 3.7 8E-05 46.1 2.4 37 87-123 44-84 (877)
114 PTZ00419 valyl-tRNA synthetase 66.8 5.4 0.00012 45.5 3.7 59 215-298 537-597 (995)
115 KOG0435 Leucyl-tRNA synthetase 66.8 7.6 0.00017 42.6 4.5 73 77-150 57-146 (876)
116 PRK06039 ileS isoleucyl-tRNA s 66.6 5 0.00011 45.7 3.3 15 215-229 544-558 (975)
117 PLN02959 aminoacyl-tRNA ligase 66.3 5 0.00011 46.3 3.3 61 215-299 670-731 (1084)
118 PRK13804 ileS isoleucyl-tRNA s 66.2 4.4 9.6E-05 46.1 2.8 16 213-228 580-595 (961)
119 PLN02660 pantoate--beta-alanin 65.3 30 0.00065 34.1 8.0 72 215-316 145-216 (284)
120 cd02168 NMNAT_Nudix Nicotinami 65.1 18 0.0004 32.9 6.2 67 85-160 8-77 (181)
121 COG0018 ArgS Arginyl-tRNA synt 64.3 6.8 0.00015 42.2 3.6 42 81-122 122-169 (577)
122 PLN02843 isoleucyl-tRNA synthe 63.0 5.3 0.00012 45.5 2.7 16 213-228 561-576 (974)
123 PRK12451 arginyl-tRNA syntheta 62.5 8.4 0.00018 41.2 4.0 63 216-303 325-388 (562)
124 TIGR00398 metG methionyl-tRNA 61.8 6 0.00013 41.6 2.7 55 219-299 285-340 (530)
125 PLN02563 aminoacyl-tRNA ligase 61.5 6 0.00013 45.1 2.8 27 215-241 615-642 (963)
126 PRK12268 methionyl-tRNA synthe 61.4 4.7 0.0001 42.6 1.8 58 218-299 289-347 (556)
127 PTZ00399 cysteinyl-tRNA-synthe 60.0 4.5 9.8E-05 44.1 1.4 92 205-322 257-354 (651)
128 PRK14536 cysS cysteinyl-tRNA s 59.8 5.9 0.00013 41.8 2.2 68 206-298 223-291 (490)
129 PLN02882 aminoacyl-tRNA ligase 59.6 8.1 0.00018 44.9 3.4 59 215-296 566-624 (1159)
130 TIGR00456 argS arginyl-tRNA sy 58.8 9.5 0.00021 40.7 3.6 41 79-119 115-161 (566)
131 PLN02381 valyl-tRNA synthetase 58.5 11 0.00024 43.5 4.2 45 78-122 129-179 (1066)
132 PLN02946 cysteine-tRNA ligase 58.2 3.9 8.4E-05 43.9 0.5 68 205-297 266-334 (557)
133 TIGR03447 mycothiol_MshC cyste 57.9 62 0.0013 33.6 9.1 70 205-298 230-300 (411)
134 PF00750 tRNA-synt_1d: tRNA sy 57.2 12 0.00027 37.4 3.9 74 216-310 239-312 (354)
135 COG0495 LeuS Leucyl-tRNA synth 57.0 8.4 0.00018 43.1 2.9 87 216-323 526-620 (814)
136 PF00133 tRNA-synt_1: tRNA syn 56.1 13 0.00028 40.0 4.1 46 78-123 24-75 (601)
137 PRK05729 valS valyl-tRNA synth 56.1 6.7 0.00014 44.1 2.0 45 78-122 37-87 (874)
138 TIGR00396 leuS_bact leucyl-tRN 56.0 8.1 0.00018 43.4 2.6 25 215-239 519-544 (842)
139 PRK14900 valS valyl-tRNA synth 55.9 7 0.00015 45.0 2.1 46 78-123 49-100 (1052)
140 KOG0436 Methionyl-tRNA synthet 54.4 49 0.0011 34.8 7.6 65 86-150 49-126 (578)
141 KOG2007 Cysteinyl-tRNA synthet 54.1 7.2 0.00016 41.3 1.7 82 204-309 246-333 (586)
142 PLN02224 methionine-tRNA ligas 53.7 8.8 0.00019 41.7 2.3 71 215-310 320-395 (616)
143 PF00750 tRNA-synt_1d: tRNA sy 53.2 5.3 0.00012 40.1 0.5 41 81-121 25-71 (354)
144 PRK14535 cysS cysteinyl-tRNA s 52.9 79 0.0017 35.0 9.3 75 76-150 246-334 (699)
145 TIGR00392 ileS isoleucyl-tRNA 52.8 12 0.00027 41.9 3.4 46 77-122 36-87 (861)
146 cd02166 NMNAT_Archaea Nicotina 51.1 76 0.0016 28.2 7.6 66 85-160 8-77 (163)
147 PRK00390 leuS leucyl-tRNA synt 51.0 11 0.00023 42.2 2.5 24 215-238 522-546 (805)
148 PRK12451 arginyl-tRNA syntheta 49.6 15 0.00033 39.3 3.3 39 81-119 118-162 (562)
149 PRK13804 ileS isoleucyl-tRNA s 49.5 11 0.00023 43.1 2.3 46 78-123 55-106 (961)
150 PRK05743 ileS isoleucyl-tRNA s 49.3 10 0.00022 42.9 2.1 74 78-151 50-152 (912)
151 PRK00133 metG methionyl-tRNA s 49.0 11 0.00024 41.0 2.3 32 260-299 311-342 (673)
152 PF02662 FlpD: Methyl-viologen 49.0 77 0.0017 27.1 7.0 72 82-159 31-103 (124)
153 PLN02286 arginine-tRNA ligase 47.1 14 0.00031 39.6 2.7 39 81-119 122-166 (576)
154 TIGR00395 leuS_arch leucyl-tRN 47.0 9.4 0.0002 43.4 1.3 45 78-122 26-76 (938)
155 TIGR00018 panC pantoate--beta- 46.6 80 0.0017 31.1 7.5 72 215-316 142-213 (282)
156 PLN02959 aminoacyl-tRNA ligase 46.5 25 0.00055 40.7 4.6 37 86-122 55-96 (1084)
157 PRK14534 cysS cysteinyl-tRNA s 46.3 56 0.0012 34.6 6.8 73 78-150 21-117 (481)
158 PF01406 tRNA-synt_1e: tRNA sy 45.1 1.1E+02 0.0025 30.4 8.4 69 206-299 196-265 (300)
159 KOG1148 Glutaminyl-tRNA synthe 43.8 28 0.0006 37.9 4.1 101 79-188 247-359 (764)
160 PLN02943 aminoacyl-tRNA ligase 43.6 27 0.00058 39.9 4.2 45 78-122 89-139 (958)
161 COG0060 IleS Isoleucyl-tRNA sy 42.8 34 0.00073 39.1 4.8 14 217-230 556-569 (933)
162 PRK12418 cysteinyl-tRNA synthe 42.6 88 0.0019 32.1 7.4 70 205-298 203-273 (384)
163 PTZ00427 isoleucine-tRNA ligas 42.1 21 0.00045 41.9 3.1 34 198-231 653-688 (1205)
164 PF09334 tRNA-synt_1g: tRNA sy 41.6 8.2 0.00018 39.4 -0.2 32 260-299 309-340 (391)
165 PRK06039 ileS isoleucyl-tRNA s 40.8 23 0.0005 40.5 3.2 46 78-123 42-93 (975)
166 PLN02610 probable methionyl-tR 39.2 12 0.00025 42.0 0.5 44 260-311 330-379 (801)
167 PRK14534 cysS cysteinyl-tRNA s 38.2 17 0.00036 38.4 1.5 66 208-298 225-291 (481)
168 COG2442 Uncharacterized conser 35.4 41 0.00089 26.9 3.0 38 312-354 19-56 (79)
169 PLN02882 aminoacyl-tRNA ligase 34.3 26 0.00057 40.8 2.4 46 78-123 39-90 (1159)
170 PRK14535 cysS cysteinyl-tRNA s 34.3 18 0.00038 39.9 0.9 100 205-322 435-547 (699)
171 PTZ00399 cysteinyl-tRNA-synthe 33.9 2E+02 0.0044 31.6 8.9 63 89-151 72-149 (651)
172 PTZ00427 isoleucine-tRNA ligas 33.8 28 0.0006 40.9 2.4 46 78-123 103-154 (1205)
173 PLN02413 choline-phosphate cyt 28.4 1.2E+02 0.0025 30.3 5.3 34 68-106 17-53 (294)
174 COG1908 FrhD Coenzyme F420-red 27.9 2E+02 0.0043 25.2 6.0 68 83-159 33-104 (132)
175 COG0525 ValS Valyl-tRNA synthe 27.3 21 0.00046 40.3 0.1 16 279-298 522-537 (877)
176 PRK05379 bifunctional nicotina 26.4 2.2E+02 0.0047 28.4 7.1 72 78-160 7-82 (340)
177 PRK01153 nicotinamide-nucleoti 24.0 3.1E+02 0.0068 24.7 7.1 26 85-117 9-35 (174)
178 KOG0432 Valyl-tRNA synthetase 23.6 60 0.0013 36.8 2.7 36 88-123 87-126 (995)
179 cd00560 PanC Pantoate-beta-ala 21.9 1.1E+02 0.0023 30.1 3.8 71 215-315 140-210 (277)
180 COG0143 MetG Methionyl-tRNA sy 21.8 34 0.00075 36.8 0.4 43 261-311 316-363 (558)
181 COG4320 Uncharacterized protei 20.2 1.1E+02 0.0024 31.1 3.5 27 89-121 63-89 (410)
No 1
>PLN02886 aminoacyl-tRNA ligase
Probab=100.00 E-value=2.3e-85 Score=652.85 Aligned_cols=303 Identities=79% Similarity=1.228 Sum_probs=278.6
Q ss_pred ceeeeccCCCCCCCCCCCCCCCceEEEeeCCCCcchhhhHHHHHHHHHHHhccCcEEEEEeccceecCCCCHHHHHHHHH
Q 018259 57 RCYCNVSLSEPTAPVASSSSVKKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATR 136 (359)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~~~i~sGi~PTG~lHLGnyig~i~~~~~lQ~~~~~~i~IADlhA~t~~~~~~~l~~~~~ 136 (359)
+|+++.++..+.++.+++.-.+++|||||||||.+|||||+|+|++|++||++++++|+||||||+|.+.++++++++++
T Consensus 25 ~~~~~~~~~~~~~~~~~~~m~~~~v~sGiqPSG~lHLGnylGai~~~v~lQ~~~~~~~~IADlHAlt~~~~~~~lr~~~~ 104 (389)
T PLN02886 25 CCSAATAATAPEKEAPPKVARKKRVVSGVQPTGSIHLGNYLGAIKNWVALQETYDTFFCVVDLHAITLPHDPRELGKATR 104 (389)
T ss_pred hhhhhhccCCCccCCCcccCCCCeEEEEECCCCccHHHHHHHHHHHHHHHhccCCEEEEEecHHHhhCCCCHHHHHHHHH
Confidence 45555554555556666666677999999999999999999999999999999999999999999999889999999999
Q ss_pred HHHHHHHHcCcCCCccEEEEccCcchhhHHHHHHhccCCHHHHhchhhHHHHHhhhCCCCcccccchhhHHHhhhhhhcc
Q 018259 137 ETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQ 216 (359)
Q Consensus 137 ~~~~~~lA~GlDp~kt~i~~qS~~~~~~eL~w~L~~~~~i~~L~r~~~~k~~~~~~~~~~~~~g~l~YPvLQAADIl~~~ 216 (359)
+++++|+||||||+|++||+||++++|.||+|+|+|.+++++|+||+|||++.+..+++.+++|+|+||+|||||||+|+
T Consensus 105 ~~~a~~lA~GlDP~ks~if~QS~v~e~~eL~wil~~~t~~g~L~R~~q~K~k~~~~~~~~~~~gll~YPvLqAADILl~~ 184 (389)
T PLN02886 105 STAAIYLACGIDPSKASVFVQSHVPAHAELMWLLSCSTPIGWLNKMIQFKEKSRKAGDENVGVGLLTYPVLMASDILLYQ 184 (389)
T ss_pred HHHHHHHHcCcCccceEEEEeCCCchhHHHHHHHHhhCcHHHHHhcchHHHHHHhcCCCCCChHhhhChHHHHhhhhhcC
Confidence 99999999999999999999999999999999999999999999999999998876546789999999999999999999
Q ss_pred cceeecccchHHHHHHHHHHHHHhhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCcCCCCCCCCCCeee
Q 018259 217 SDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRIN 296 (359)
Q Consensus 217 adivpvG~DQ~~hieLaRdia~k~n~~~g~~~~~~~~~~~~~~~~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~~s~I~ 296 (359)
+|+||||+||+||+||+||||+|||+.||.+..++++++++.+|++|++++.+.+++||+|+||++|||||+|+++|+|+
T Consensus 185 a~~VPVG~DQ~qH~eLtRdiA~rfN~~y~~~~~~~~~~~~~~~f~~P~~l~~~~~~ri~~L~~g~~KMSKS~p~~~s~I~ 264 (389)
T PLN02886 185 ADLVPVGEDQKQHLELTRDIAERVNNLYGGRKWKKLGGRGGSVFKVPEALIPPAGARVMSLTDGTSKMSKSAPSDQSRIN 264 (389)
T ss_pred CCeEEEccchHHHHHHHHHHHHHHhhhccccccccccccCCceecCCeeccCcccceeeeCCCCCCcCCCCCCCCCCeEE
Confidence 99999999999999999999999999998655556666666789999999987668999999988899999998789999
Q ss_pred cCCCHHHHHHHhhhccCCCCCCcccCCCCCCCcchHHHHHHHcCCCCHHHHHHHhccCCcccC
Q 018259 297 LLDPKDVIANKIKRCKTDSSAGLEFDNLERPECNNLLSIYQLISGKTKGEVAEECQNMNWGSL 359 (359)
Q Consensus 297 L~D~p~~I~kKI~rA~Td~~~~i~~~~~~~p~v~nl~~i~~~~~~~~~~~v~~~~~~~~~g~~ 359 (359)
|+|+|++|++||++|+||+.++++|++|++|+++||+.||.+|++.+++++.++|++.+||+|
T Consensus 265 L~Ds~e~I~kKI~~a~TD~~~~i~~~~p~~p~v~nl~~i~~~~~~~~~eei~~~~~~~~~g~~ 327 (389)
T PLN02886 265 LLDPPDVIANKIKRCKTDSFPGLEFDNPERPECNNLLSIYQLVTGKTKEEVLAECGDMRWGDF 327 (389)
T ss_pred ecCCHHHHHHHHhcCCCCCCCCccCCCCCCcccccHHHHHHHccCCCHHHHHHHhcCCCCchH
Confidence 999999999999999999999999999999999999999999999999999999998888874
No 2
>KOG2713 consensus Mitochondrial tryptophanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=5.1e-83 Score=603.43 Aligned_cols=271 Identities=55% Similarity=0.842 Sum_probs=260.6
Q ss_pred CceEEEeeCCCCcchhhhHHHHHHHHHHHhccCc----EEEEEeccceecCCCCHHHHHHHHHHHHHHHHHcCcCCCccE
Q 018259 78 KKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYE----TLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKAS 153 (359)
Q Consensus 78 ~~~i~sGi~PTG~lHLGnyig~i~~~~~lQ~~~~----~~i~IADlhA~t~~~~~~~l~~~~~~~~~~~lA~GlDp~kt~ 153 (359)
+.++|+||||||.+|||||+|++++|++||+.++ ++|+|+|+||+|.|.++..+|+++.++++.++|||+||+|+.
T Consensus 13 ~~rvfSGIQPTG~~HLGNYLGai~~Wv~LQ~~~d~~~~~~f~vvDlHaITvp~dp~~lrq~~~dm~A~lLAcGIdp~Ks~ 92 (347)
T KOG2713|consen 13 PKRVFSGIQPTGIPHLGNYLGAIKPWVQLQNEYDKNILVLFSVVDLHAITVPQDPAELRQATHDMAASLLACGIDPEKSS 92 (347)
T ss_pred cceeEeccCCCCCchhhhhhhhhhHHHHHHHHhcCCceEEEEEeeceeecCCCChHHHHHHHHHHHHHHHHhccCcccce
Confidence 5799999999999999999999999999998543 699999999999999999999999999999999999999999
Q ss_pred EEEccCcchhhHHHHHHhccCCHHHHhchhhHHHHHhhhCCCCcccccchhhHHHhhhhhhcccceeecccchHHHHHHH
Q 018259 154 VFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELT 233 (359)
Q Consensus 154 i~~qS~~~~~~eL~w~L~~~~~i~~L~r~~~~k~~~~~~~~~~~~~g~l~YPvLQAADIl~~~adivpvG~DQ~~hieLa 233 (359)
+|+||++++|.|+.|+|+|.++++||+||+|||++....+.+++++|+|+||+|||||||+|++++||||+||.||+||+
T Consensus 93 lF~QS~Vpqh~el~WlLsslt~mg~L~rm~Q~KeKs~~~~~~~~~vGLftYPvLqAADILLYksThVPVGeDQsQHleL~ 172 (347)
T KOG2713|consen 93 LFVQSDVPQHAELSWLLSSLTTMGRLARMPQWKEKSERFKVGDVPVGLFTYPVLQAADILLYKSTHVPVGEDQSQHLELA 172 (347)
T ss_pred eeeeccchHHHHHHHHHHhccchHHHHhhHHHHhhhhhhccCccceeeecchhHhhhhHhhhccccccCCccHHHHHHHH
Confidence 99999999999999999999999999999999999976665789999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCcCCCCCCCCCCeeecCCCHHHHHHHhhhccC
Q 018259 234 RELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRCKT 313 (359)
Q Consensus 234 Rdia~k~n~~~g~~~~~~~~~~~~~~~~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~~s~I~L~D~p~~I~kKI~rA~T 313 (359)
|++|++||+.||+++ |++|+.++....++|++|.||.+|||||+|++.++|+|+|+|++|.+||+||.|
T Consensus 173 r~lA~~fN~~Y~~~~-----------fpvP~~il~~~~~rV~SL~dpekKMSKSd~n~~s~I~l~DS~~~I~~Ki~ka~T 241 (347)
T KOG2713|consen 173 RHLAQAFNKTYGTEI-----------FPVPEQILRQSHARVMSLRDPEKKMSKSDPNPKSRINLTDSPDLIVKKIKKAQT 241 (347)
T ss_pred HHHHHHHhhhccCee-----------ecCcHHHHhhhhhhhhhccChhhhcccCCCCCcceEEecCCHHHHHHHHHHHhc
Confidence 999999999999764 999999998745999999999999999999999999999999999999999999
Q ss_pred CCCCCcccCCCCCCCcchHHHHHHHcCCCCHHHHHHHhccCCcccC
Q 018259 314 DSSAGLEFDNLERPECNNLLSIYQLISGKTKGEVAEECQNMNWGSL 359 (359)
Q Consensus 314 d~~~~i~~~~~~~p~v~nl~~i~~~~~~~~~~~v~~~~~~~~~g~~ 359 (359)
|....++||+.+||||+||++||+++++.+++||.+++++++|++|
T Consensus 242 D~~~~vtYd~~~RpgvsNLlni~aaVt~~s~eeV~~~~a~~~~~~f 287 (347)
T KOG2713|consen 242 DNTSGVTYDPANRPGVSNLLNIYAAVTGKSIEEVVEESANMSTADF 287 (347)
T ss_pred ccccceeeCCccccchhHHHHHHHHHcCCCHHHHHHHhccCCHHHH
Confidence 9999999999999999999999999999999999999999999886
No 3
>COG0180 TrpS Tryptophanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=7.9e-80 Score=597.16 Aligned_cols=266 Identities=52% Similarity=0.820 Sum_probs=250.0
Q ss_pred CCceEEEeeCCCCcchhhhHHHHHHHHHHHhcc-CcEEEEEeccceecCCCCH--HHHHHHHHHHHHHHHHcCcCCCccE
Q 018259 77 VKKRIVSGVQPTGSIHLGNYLGAIKNWIALQNS-YETLFFIVDLHAITLPYDT--QQLSKATRETAAIYLACGIDNSKAS 153 (359)
Q Consensus 77 ~~~~i~sGi~PTG~lHLGnyig~i~~~~~lQ~~-~~~~i~IADlhA~t~~~~~--~~l~~~~~~~~~~~lA~GlDp~kt~ 153 (359)
.+++|+||+||||.+|||||+|++++|+++|+. +++||+|||+||+|.+.++ +.+++++++++++|+|+||||+|+.
T Consensus 4 ~~~~vlSG~~PSG~lHLGny~ga~~~~v~~q~~~~~~f~~IaDlha~t~~~~~~~~~l~~~~~e~~a~~LA~GiDP~k~~ 83 (314)
T COG0180 4 KKFRVLSGIQPSGKLHLGNYLGAIRNWVLLQEEYYECFFFIADLHAITVRQDPTEEDLRQATREVAADYLAVGLDPEKST 83 (314)
T ss_pred CCceEEecCCCCCCcchhHhHHHHHHHHHHhcccCceEEEEecHHHhhcCCCChHHHHHHHHHHHHHHHHHhccCccccE
Confidence 478999999999999999999999999999998 5999999999999997766 8999999999999999999999999
Q ss_pred EEEccCcchhhHHHHHHhccCCHHHHhchhhHHHHHhhhCCCCcccccchhhHHHhhhhhhcccceeecccchHHHHHHH
Q 018259 154 VFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELT 233 (359)
Q Consensus 154 i~~qS~~~~~~eL~w~L~~~~~i~~L~r~~~~k~~~~~~~~~~~~~g~l~YPvLQAADIl~~~adivpvG~DQ~~hieLa 233 (359)
||+||++++|.||+|+|+|.++++||+|+++||++..+.+ +.+++|++.||+|||||||+|++++||||.||+||+||+
T Consensus 84 if~QS~v~e~~eLa~~l~~~~~~gel~r~~~fKdk~~~~~-~~~~~Gl~~YPvlqAADILl~~a~~VPVG~DQ~qHleLt 162 (314)
T COG0180 84 IFLQSEVPEHAELAWLLSCVTNFGELERMTQFKDKSAKKG-ESIPIGLLTYPVLQAADILLYQATLVPVGEDQDQHLELT 162 (314)
T ss_pred EEEccCchHHHHHHHHHHccCcHHHHHhhcCcchhhhccc-ccccccchhccHHHHHHhhhccCCeeccCCCchHHHHHH
Confidence 9999999999999999999999999999999999988765 689999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCcCCCCCCCCCCeeecCCCHHHHHHHhhhccC
Q 018259 234 RELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRCKT 313 (359)
Q Consensus 234 Rdia~k~n~~~g~~~~~~~~~~~~~~~~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~~s~I~L~D~p~~I~kKI~rA~T 313 (359)
||||+|||+.||. +|++|+++++.. +++|||+++ +|||||+|+ |+|+|+|+|++|++||++|.|
T Consensus 163 RDiA~rfn~~y~~------------~f~~P~~~~~~~-~~i~gL~g~-~KMSkS~~n--s~I~L~D~~~~i~kKI~~~~t 226 (314)
T COG0180 163 RDIARRFNHLYGE------------VFPLPEALISKV-ARLPGLDGP-GKMSKSDPN--SAIFLLDDPKTIRKKIKKAAT 226 (314)
T ss_pred HHHHHHHHhhcCC------------ccCCccccccCC-CcccCCCCC-CcccccCCC--CeeeccCCHHHHHHHHHHhcc
Confidence 9999999999984 499999999976 799999766 999999984 899999999999999999999
Q ss_pred CCCCCcccCCCCCCCcchHHHHHHHcC-CCCHHHHHHHhcc--CCcccC
Q 018259 314 DSSAGLEFDNLERPECNNLLSIYQLIS-GKTKGEVAEECQN--MNWGSL 359 (359)
Q Consensus 314 d~~~~i~~~~~~~p~v~nl~~i~~~~~-~~~~~~v~~~~~~--~~~g~~ 359 (359)
|+...++++++++|+++|+|+||++|+ +++.+++.++|++ .+||+|
T Consensus 227 d~~~~~~~~~~g~Pe~~~l~~~~~~~~~~~~~~ei~~~~~~G~~~~ge~ 275 (314)
T COG0180 227 DGPTLIEYRKGGKPEVCNLFEIYSAFFEDDSILEIEAEYRGGELGCGEC 275 (314)
T ss_pred CCCCccccCCCCCCCcchHHHHHHHhcCCCcHHHHHHHHhccccchHHH
Confidence 995567888899999999999999999 8999999999987 577653
No 4
>PRK12284 tryptophanyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=1.6e-76 Score=594.04 Aligned_cols=262 Identities=36% Similarity=0.615 Sum_probs=240.3
Q ss_pred ceEEEeeCCCCcchhhhHHHHHHHHHHHhc--cCcEEEEEeccceecCCCCHHHHHHHHHHHHHHHHHcCcCCCccEEEE
Q 018259 79 KRIVSGVQPTGSIHLGNYLGAIKNWIALQN--SYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFV 156 (359)
Q Consensus 79 ~~i~sGi~PTG~lHLGnyig~i~~~~~lQ~--~~~~~i~IADlhA~t~~~~~~~l~~~~~~~~~~~lA~GlDp~kt~i~~ 156 (359)
.+|||||||||.+|||||+|++++|+++|+ +++++|+||||||+|++.+++++++++++++++|+||||||+|++||+
T Consensus 3 ~rvlSGiqPTG~lHLGNylGaik~~v~lq~q~~~~~~~~IADlHAlT~~~dp~~lr~~~~e~aa~~LA~GlDPek~~if~ 82 (431)
T PRK12284 3 TRVLTGITTTGTPHLGNYAGAIRPAIAASRQPGVESFYFLADYHALIKCDDPARIQRSTLEIAATWLAAGLDPERVTFYR 82 (431)
T ss_pred eEEEEEecCCCcchHHHHHHHHHHHHHHHHhCCCcEEEEeechhhccCCCCHHHHHHHHHHHHHHHHHhCCCccceEEEE
Confidence 589999999999999999999999999976 899999999999999888999999999999999999999999999999
Q ss_pred ccCcchhhHHHHHHhccCCHHHHhchhhHHHHHhhhC------CCCcccccchhhHHHhhhhhhcccceeecccchHHHH
Q 018259 157 QSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAG------GENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHL 230 (359)
Q Consensus 157 qS~~~~~~eL~w~L~~~~~i~~L~r~~~~k~~~~~~~------~~~~~~g~l~YPvLQAADIl~~~adivpvG~DQ~~hi 230 (359)
||++++|.||+|+|+|.+++++|+|+++||++..+.+ .+++++|+|+||+|||||||+|++|+||||+||+||+
T Consensus 83 QSdvpeh~EL~wiL~~it~~g~L~Rm~q~K~k~~~~~~~g~~~~~~i~~Gll~YPvLqAADILly~ad~VPVG~DQ~qHl 162 (431)
T PRK12284 83 QSDIPEIPELTWLLTCVAGKGLLNRAHAYKAAVDKNVAAGEDPDAGVTAGLFMYPVLMAADILMFNAHKVPVGRDQIQHI 162 (431)
T ss_pred CCcchhHHHHHHHHHhhhhHHHHHhhhHHHHHHHhhhccccCcccCcchHHhhchHHHHhhhhhcCCCEEEEcchhHHHH
Confidence 9999999999999999999999999999998754331 1458999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCcCCCCCCCCCCeeecCCCHHHHHHHhhh
Q 018259 231 ELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKR 310 (359)
Q Consensus 231 eLaRdia~k~n~~~g~~~~~~~~~~~~~~~~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~~s~I~L~D~p~~I~kKI~r 310 (359)
||+||||+|||+.||.+ +|++|+.++...+++|||| || +|||||+ +|+|+|+|+|++|++||++
T Consensus 163 ELaRdIA~rFN~~yg~~-----------~F~~Pe~~i~~~~~~I~gL-dg-~KMSKS~---~n~I~L~Ds~~~I~kKI~~ 226 (431)
T PRK12284 163 EMARDIAQRFNHLYGGE-----------FFVLPEAVIEESVATLPGL-DG-RKMSKSY---DNTIPLFAPREELKKAIFS 226 (431)
T ss_pred HHHHHHHHHHhhhcCCc-----------ccCCCccccccccccccCC-CC-ccccCCC---CCEeeecCCHHHHHHHHhc
Confidence 99999999999999754 3899999998766999999 66 6999997 4899999999999999999
Q ss_pred ccCCCCCCcccCCCCCCCcchHHHHHHHcCC-CCHHHHHHHhc-cCCcccC
Q 018259 311 CKTDSSAGLEFDNLERPECNNLLSIYQLISG-KTKGEVAEECQ-NMNWGSL 359 (359)
Q Consensus 311 A~Td~~~~i~~~~~~~p~v~nl~~i~~~~~~-~~~~~v~~~~~-~~~~g~~ 359 (359)
|+||+.+ .+++++|+++|||+||++|++ .+++++.++|. +.+||+|
T Consensus 227 A~TDs~~---~~~~~~pe~snLl~i~~~~~~~~~~eel~~~~~~g~~~g~~ 274 (431)
T PRK12284 227 IVTDSRA---PGEPKDTEGSALFQLYQAFATPEETAAFRQALADGIGWGDA 274 (431)
T ss_pred CCCCCCC---CCCCCCCCcchHHHHHHHhCCcchHHHHHHHHhcCCChHHH
Confidence 9999875 345788999999999999986 67899999996 5577764
No 5
>PRK12283 tryptophanyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=3.2e-75 Score=580.17 Aligned_cols=273 Identities=38% Similarity=0.664 Sum_probs=245.4
Q ss_pred CceEEEeeCCCCcchhhhHHHHHHHHHHHhccCcEEEEEeccceecCCC-CHHHHHHHHHHHHHHHHHcCcCCCccEEEE
Q 018259 78 KKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPY-DTQQLSKATRETAAIYLACGIDNSKASVFV 156 (359)
Q Consensus 78 ~~~i~sGi~PTG~lHLGnyig~i~~~~~lQ~~~~~~i~IADlhA~t~~~-~~~~l~~~~~~~~~~~lA~GlDp~kt~i~~ 156 (359)
+.+|||||||||.+|||||+|++++|+++|++++++|+||||||+|++. +++++++++++++++|+||||||+|+.||+
T Consensus 2 ~~~v~sGiqPSG~~HLGnylG~ik~wv~lq~~~~~~~~IADlHAlt~~~~d~~~ir~~~~~~~a~~lA~GlDP~k~~if~ 81 (398)
T PRK12283 2 PDRVLSGMRPTGRLHLGHYHGVLKNWVKLQHEYECFFFVADWHALTTHYETPEVIEKNVWDMVIDWLAAGVDPAQATLFI 81 (398)
T ss_pred CcEEEEEeCCCCcchHHHHHHHHHHHHHHhcCCcEEEEeecHHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCccceEEEE
Confidence 3589999999999999999999999999999999999999999999854 999999999999999999999999999999
Q ss_pred ccCcchhhHHHHHHhccCCHHHHhchhhHHHHHhhh-CCCCcccccchhhHHHhhhhhhcccceeecccchHHHHHHHHH
Q 018259 157 QSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKA-GGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRE 235 (359)
Q Consensus 157 qS~~~~~~eL~w~L~~~~~i~~L~r~~~~k~~~~~~-~~~~~~~g~l~YPvLQAADIl~~~adivpvG~DQ~~hieLaRd 235 (359)
||++++|.||+|+|+|.+++++|+|++|||++.... ..+..++|+++||+|||||||+|++|+||||+||+||+||+||
T Consensus 82 QS~v~eh~eL~wil~~~t~~~~L~R~~~~Kdk~~~~~~~~~~~~Gll~YPvLqAADILl~~a~iVPVG~DQ~qHleLaRd 161 (398)
T PRK12283 82 QSKVPEHAELHLLLSMITPLGWLERVPTYKDQQEKLKEKDLSTYGFLGYPLLQSADILIYRAGLVPVGEDQVPHVEMTRE 161 (398)
T ss_pred CCCchHHHHHHHHHHhhccHHHHHhhhHHHHHHhhhccccCCcchhhcCcHHHHHHHHhcCCCEeeeccccHHHHHHHHH
Confidence 999999999999999999999999999999987652 1256899999999999999999999999999999999999999
Q ss_pred HHHHhhhhhCCccc----------------------------------------------------------cccCCCCC
Q 018259 236 LAERVNYLYGGRKW----------------------------------------------------------KKLGGRGG 257 (359)
Q Consensus 236 ia~k~n~~~g~~~~----------------------------------------------------------~~~~~~~~ 257 (359)
||+|||+.||.+.+ ....++++
T Consensus 162 IA~rfN~~yg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (398)
T PRK12283 162 IARRFNHLYGREPGFEEKAEAAIKKLGKKRAKLYHELRNAYQEEGDDEALEQARALLQEQQNLSMGDRERLFGYLEGAGK 241 (398)
T ss_pred HHHHHHHhcCccccchhHHHHHhhccchhhHHHHHHHHHHHHhhcchhhhhhhhhhhhhhhhhhhhhhccccccccccCC
Confidence 99999999985210 01123455
Q ss_pred ccccCCceecCCCCcccccCCCCCCcCCCCCCCCCCeeecCCCHHHHHHHhhhccCCCCCCcccCCCCCCCcchHHHHHH
Q 018259 258 AIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRCKTDSSAGLEFDNLERPECNNLLSIYQ 337 (359)
Q Consensus 258 ~~~~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~~s~I~L~D~p~~I~kKI~rA~Td~~~~i~~~~~~~p~v~nl~~i~~ 337 (359)
.+|++|++++.+. ++|||| || +|||||. +|+|+|+|+|++|++||++|+||+.....++ |++|+++||++||+
T Consensus 242 ~~~~~P~~~~~~~-~~I~gL-dg-~KMSKS~---~n~I~L~Ds~~~I~kKI~~a~TDs~~~~~~~-~g~Pe~~nl~~i~~ 314 (398)
T PRK12283 242 IILPEPQALLTEA-SKMPGL-DG-QKMSKSY---GNTIGLREDPESVTKKIRTMPTDPARVRRTD-PGDPEKCPVWQLHQ 314 (398)
T ss_pred cccCCCcccccCC-CcccCC-CC-CcCCCCC---CCeeeCcCCHHHHHHHHHhCCCCCcccccCC-CCCCCcCHHHHHHH
Confidence 6799999998665 999999 88 7999996 4899999999999999999999998755544 58999999999999
Q ss_pred HcCCC-CHHHHHHHhccCCcc
Q 018259 338 LISGK-TKGEVAEECQNMNWG 357 (359)
Q Consensus 338 ~~~~~-~~~~v~~~~~~~~~g 357 (359)
+|++. +++++.++|+++++|
T Consensus 315 ~~~~~~~~~~i~~~~~~g~~~ 335 (398)
T PRK12283 315 VYSDEETKEWVQKGCRSAGIG 335 (398)
T ss_pred HhCCChHHHHHHHHHhcCCCC
Confidence 99887 589999999887664
No 6
>PRK00927 tryptophanyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=2.7e-75 Score=573.48 Aligned_cols=267 Identities=58% Similarity=0.950 Sum_probs=248.4
Q ss_pred ceEEEeeCCCCcchhhhHHHHHHHHHHHhccCcEEEEEeccceecCCCCHHHHHHHHHHHHHHHHHcCcCCCccEEEEcc
Q 018259 79 KRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQS 158 (359)
Q Consensus 79 ~~i~sGi~PTG~lHLGnyig~i~~~~~lQ~~~~~~i~IADlhA~t~~~~~~~l~~~~~~~~~~~lA~GlDp~kt~i~~qS 158 (359)
+++|+||+|||.+|||||+|+|++|++||++++++|+||||||+|++.+++++++++++++++|+|+|+||+|+.||+||
T Consensus 2 ~~v~~G~~PTG~lHLG~~~g~~~~~~~lQ~~~~~~~~IaD~ha~t~~~~~~~i~~~~~~~~~~~lA~GlDp~k~~if~qS 81 (333)
T PRK00927 2 KRVLSGIQPTGKLHLGNYLGAIKNWVELQDEYECFFCIADLHALTVPQDPEELRENTRELAADYLACGIDPEKSTIFVQS 81 (333)
T ss_pred CEEEEeeCCCccchHHhHHHHHHHHHHHHhcCCeEEEEecHHHHhCCCCHHHHHHHHHHHHHHHHeEccChhheEEEEeC
Confidence 68999999999999999999999999999999999999999999998899999999999999999999999999999999
Q ss_pred CcchhhHHHHHHhccCCHHHHhchhhHHHHHhhhCCCCcccccchhhHHHhhhhhhcccceeecccchHHHHHHHHHHHH
Q 018259 159 HVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAE 238 (359)
Q Consensus 159 ~~~~~~eL~w~L~~~~~i~~L~r~~~~k~~~~~~~~~~~~~g~l~YPvLQAADIl~~~adivpvG~DQ~~hieLaRdia~ 238 (359)
+|++|.+++|++++.+++++|+|+++||++.+..+ +++++|+++||+|||||||++++|+||||+||+||+||+||||+
T Consensus 82 ~~~~~~el~~~l~~~~~~~~l~r~~~~k~~~~~~~-~~~~~g~~~YP~lQaaDil~~~~divpvG~DQ~~h~elaRdia~ 160 (333)
T PRK00927 82 HVPEHAELAWILNCITPLGELERMTQFKDKSAKQK-ENVSAGLFTYPVLMAADILLYKADLVPVGEDQKQHLELTRDIAR 160 (333)
T ss_pred CCchhHHHHHHHHhhhhHHHHHhhhhHHHHHhccC-CCCCcHhhhcHHHHHHHHHhcCCCEEeeccchHHHHHHHHHHHH
Confidence 99999999999999999999999999998865433 67899999999999999999999999999999999999999999
Q ss_pred HhhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCcCCCCCCCCCCeeecCCCHHHHHHHhhhccCCCCC-
Q 018259 239 RVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRCKTDSSA- 317 (359)
Q Consensus 239 k~n~~~g~~~~~~~~~~~~~~~~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~~s~I~L~D~p~~I~kKI~rA~Td~~~- 317 (359)
|||+.||. +|++|++++...+++||||+++++|||||++++.|+|+|+|+|++|++||++|+||+..
T Consensus 161 ~~n~~~~~------------~f~~P~~i~~~~~~~l~gL~g~~~KMSKS~~~~~~~I~l~D~~~~I~~KI~~a~td~~~~ 228 (333)
T PRK00927 161 RFNNLYGE------------VFPVPEPLIPKVGARVMGLDGPTKKMSKSDPNDNNTINLLDDPKTIAKKIKKAVTDSERL 228 (333)
T ss_pred Hhhhhccc------------cCCCChhhhccccccccCCCCCCCCCCCCCCCCCCeEEeeCCHHHHHHHHHhCCCCCCcc
Confidence 99999974 38899999976568999996666799999986669999999999999999999999987
Q ss_pred -CcccCCCCCCCcchHHHHHHHcCCCCHHHHHHHhccC--Cccc
Q 018259 318 -GLEFDNLERPECNNLLSIYQLISGKTKGEVAEECQNM--NWGS 358 (359)
Q Consensus 318 -~i~~~~~~~p~v~nl~~i~~~~~~~~~~~v~~~~~~~--~~g~ 358 (359)
.+.++++++|+++|+++||.+|++.+++++.++|..+ .+|+
T Consensus 229 ~~~~~~~~~~p~~~~l~~~~~~~~~~~~eel~~~~~~g~~~~~~ 272 (333)
T PRK00927 229 REIRYDLPNKPEVSNLLTIYSALSGESIEELEAEYEAGGKGYGD 272 (333)
T ss_pred cccccCCCCCCccccHHHHHHHhCCCCHHHHHHHHhcCCCChHH
Confidence 4567999999999999999999999999999999844 4554
No 7
>PRK12556 tryptophanyl-tRNA synthetase; Provisional
Probab=100.00 E-value=1.4e-74 Score=567.91 Aligned_cols=262 Identities=39% Similarity=0.653 Sum_probs=237.7
Q ss_pred CceEEEeeCCCCcchhhhHHHHHHHHHHHhccC--cEEEEEeccceecCCCCHHHHHHHHHHHHHHHHHcCcCCCccEEE
Q 018259 78 KKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSY--ETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVF 155 (359)
Q Consensus 78 ~~~i~sGi~PTG~lHLGnyig~i~~~~~lQ~~~--~~~i~IADlhA~t~~~~~~~l~~~~~~~~~~~lA~GlDp~kt~i~ 155 (359)
+.++||||||||.+|||||+|++++|+++|+.+ +++|+||||||+|.+.+++++++++++++++|+||||||+|++||
T Consensus 3 ~~~v~sGiqPTG~~HLGnylga~k~~~~lq~~~~~~~~~~IADlHalt~~~~~~~l~~~~~~~~~~~lA~GlDP~k~~if 82 (332)
T PRK12556 3 EKIMLTGIKPTGYPHLGNYIGAIKPALQMAKNYEGKALYFIADYHALNAVHDPEQFRSYTREVAATWLSLGLDPEDVIFY 82 (332)
T ss_pred CCEEEEEECCCCcchHHHHHHHHHHHHHHHHhcCCeEEEEEechhhccCCCCHHHHHHHHHHHHHHHhheeecccceEEE
Confidence 469999999999999999999999999998744 499999999999877899999999999999999999999999999
Q ss_pred EccCcchhhHHHHHHhccCCHHHHhchhhHHHHHhhhC------CCCcccccchhhHHHhhhhhhcccceeecccchHHH
Q 018259 156 VQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAG------GENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQH 229 (359)
Q Consensus 156 ~qS~~~~~~eL~w~L~~~~~i~~L~r~~~~k~~~~~~~------~~~~~~g~l~YPvLQAADIl~~~adivpvG~DQ~~h 229 (359)
+||++++|.+|+|+++|.++++||+||+|||++..... ++++++|+++||+|||||||+|++|+||||+||+||
T Consensus 83 ~qS~v~~~~eL~~il~~~t~~g~L~R~~~~K~k~~~~~~~~~~~~~~~~~gll~YPvLqAADIl~~~~d~VpvG~DQ~qh 162 (332)
T PRK12556 83 RQSDVPEIFELAWILSCLTPKGLMNRAHAYKAKVDQNKEAGLDLDAGVNMGLYTYPILMAADILLFQATHVPVGKDQIQH 162 (332)
T ss_pred ECCCchHHHHHHHHHHccchHHHHHhccHHHHHHhhhhhhccccCCCCcchhhhchHHHhhhhhhccCCEEEeccccHHH
Confidence 99999999999999999999999999999999865421 235799999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCcCCCCCCCCCCeeecCCCHHHHHHHhh
Q 018259 230 LELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIK 309 (359)
Q Consensus 230 ieLaRdia~k~n~~~g~~~~~~~~~~~~~~~~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~~s~I~L~D~p~~I~kKI~ 309 (359)
+||+||||+|||+.||. .|++|+.++++..+++||| || +|||||++ |+|+|+|+|++|++||+
T Consensus 163 leLtRdiA~rfn~~yg~------------~f~~P~~~~~~~~~~l~gL-dg-~KMSKS~~---n~I~L~D~p~~I~kKI~ 225 (332)
T PRK12556 163 IEIARDIATYFNHTFGD------------TFTLPEYVIQEEGAILPGL-DG-RKMSKSYG---NVIPLFAEQEKLRKLIF 225 (332)
T ss_pred HHHHHHHHHHHHHhccc------------cCCCceeccccccccccCC-CC-CCCCCCCC---CcccccCCHHHHHHHHH
Confidence 99999999999999985 3888999876555889999 67 69999984 78999999999999999
Q ss_pred hccCCCCCCcccCCCCCCCcchHHHHHHHcCC-CCHHHHHHHhc-cCCcccC
Q 018259 310 RCKTDSSAGLEFDNLERPECNNLLSIYQLISG-KTKGEVAEECQ-NMNWGSL 359 (359)
Q Consensus 310 rA~Td~~~~i~~~~~~~p~v~nl~~i~~~~~~-~~~~~v~~~~~-~~~~g~~ 359 (359)
+|+||+.+ .+.+++|+++|+++||++|++ .+++++.++|. +.++|+|
T Consensus 226 ka~Td~~~---~~~~~~p~~~~l~~i~~~~~~~~~~eei~~~y~~~~~~~~~ 274 (332)
T PRK12556 226 KIKTDSSL---PNEPKDPETSALFTIYKEFATEEEVQSMREKYETGIGWGDV 274 (332)
T ss_pred HhccCCCc---ccCCCCcchhHHHHHHHHHCCchhHHHHHHHHhcCCChHHH
Confidence 99999876 356789999999999999976 57899999997 5566653
No 8
>PRK12282 tryptophanyl-tRNA synthetase II; Reviewed
Probab=100.00 E-value=4.4e-72 Score=550.56 Aligned_cols=264 Identities=34% Similarity=0.535 Sum_probs=243.6
Q ss_pred CceEEEeeCCCCcchhhhHHHHHHHHHHHhccCcEEEEEeccceecC-CCCHHHHHHHHHHHHHHHHHcCcCCCccEEEE
Q 018259 78 KKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITL-PYDTQQLSKATRETAAIYLACGIDNSKASVFV 156 (359)
Q Consensus 78 ~~~i~sGi~PTG~lHLGnyig~i~~~~~lQ~~~~~~i~IADlhA~t~-~~~~~~l~~~~~~~~~~~lA~GlDp~kt~i~~ 156 (359)
+.+||||++|||.+|||||+|++++|++||+.++++|+||||||+++ +.+++++++++++++++|+|+||||+|++||+
T Consensus 2 ~~~v~sG~~PTG~~HLGn~l~~~~~~~~lQ~~~~~~i~IaD~ha~~~~~~~~~~i~~~~~~~~~~~lA~G~dp~k~~i~~ 81 (333)
T PRK12282 2 KPIILTGDRPTGKLHLGHYVGSLKNRVALQNEHEQFVLIADQQALTDNAKNPEKIRRNILEVALDYLAVGIDPAKSTIFI 81 (333)
T ss_pred CCEEEEeeCCCCcchHHHHHHHHHHHHHHHhCCCEEEEEccchhHhCCCCCHHHHHHHHHHHHHHHHHhCcChhHeEEEE
Confidence 46899999999999999999999999999997789999999999997 67999999999999999999999999999999
Q ss_pred ccCcchhhHHHHHHhccCCHHHHhchhhHHHHHhhhC-CCCcccccchhhHHHhhhhhhcccceeecccchHHHHHHHHH
Q 018259 157 QSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAG-GENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRE 235 (359)
Q Consensus 157 qS~~~~~~eL~w~L~~~~~i~~L~r~~~~k~~~~~~~-~~~~~~g~l~YPvLQAADIl~~~adivpvG~DQ~~hieLaRd 235 (359)
||++++|.++.|++++.++++||+|+.+||++....+ ++++++|+++||+||||||++|++|+||||+||+||+||+||
T Consensus 82 qS~~~e~~~l~~~l~~~~~~~~l~r~~~~k~~~~~~~~~~~~~~g~l~YP~lqaaDIl~~~~d~vpvG~DQ~~h~~laRd 161 (333)
T PRK12282 82 QSQIPELAELTMYYMNLVTVARLERNPTVKTEIAQKGFGRSIPAGFLTYPVSQAADITAFKATLVPVGDDQLPMIEQTRE 161 (333)
T ss_pred CCcchHHHHHHHHHHhhchHHHHhhchHHHHHHhccCCCCCCcchhhcchHHHHHHHHhhCCCEEEeccccHHHHHHHHH
Confidence 9999999999999999999999999999998755443 367899999999999999999999999999999999999999
Q ss_pred HHHHhhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCcCCCCCCCCCCeeecCCCHHHHHHHhhhccCCC
Q 018259 236 LAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRCKTDS 315 (359)
Q Consensus 236 ia~k~n~~~g~~~~~~~~~~~~~~~~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~~s~I~L~D~p~~I~kKI~rA~Td~ 315 (359)
+|+|||+.||.+ +|..|++++.. +++|||| +|.+|||||++ ++|+|+|+|++|++||++|+||+
T Consensus 162 iA~~~n~~~~~~-----------~~~~p~~~~~~-~~~i~~L-~g~~KMSKS~~---~~I~L~D~pe~I~kKI~~A~td~ 225 (333)
T PRK12282 162 IVRRFNSLYGTD-----------VLVEPEALLPE-AGRLPGL-DGKAKMSKSLG---NAIYLSDDADTIKKKVMSMYTDP 225 (333)
T ss_pred HHHHHhhhcCCc-----------cccCchhcccC-CCcccCC-CCCCcCCCCCC---CeeeeeCCHHHHHHHHHhCcCCC
Confidence 999999998854 38889988866 4899999 77789999984 79999999999999999999998
Q ss_pred CCCcccCCCCCCCcchHHHHHHHc--CCCCHHHHHHHhccCCccc
Q 018259 316 SAGLEFDNLERPECNNLLSIYQLI--SGKTKGEVAEECQNMNWGS 358 (359)
Q Consensus 316 ~~~i~~~~~~~p~v~nl~~i~~~~--~~~~~~~v~~~~~~~~~g~ 358 (359)
.. ++++++++|+++|+++||++| ++.+++++.++|..+.+++
T Consensus 226 ~~-~~~~~~~~~~~~~l~~~~~~f~~~~~~~e~l~~~y~~g~~~~ 269 (333)
T PRK12282 226 NH-IRVEDPGKVEGNVVFTYLDAFDPDKAEVAELKAHYQRGGLGD 269 (333)
T ss_pred CC-ccCCCCCCCCcChHHHHHHHhCCCCchHHHHHHHHhcCCCCc
Confidence 64 789999999999999999999 4688999999998777654
No 9
>TIGR00233 trpS tryptophanyl-tRNA synthetase. This model represents tryptophanyl-tRNA synthetase. Some members of the family have a pfam00458 domain amino-terminal to the region described by this model.
Probab=100.00 E-value=1.2e-71 Score=546.64 Aligned_cols=262 Identities=47% Similarity=0.674 Sum_probs=241.7
Q ss_pred CceEEEeeCCCCcchhhhHHHHHHHHHHHhccCcEEEEEeccceecCCC--CHHHHHHHHHHHHHHHHHcCcCCCccEEE
Q 018259 78 KKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPY--DTQQLSKATRETAAIYLACGIDNSKASVF 155 (359)
Q Consensus 78 ~~~i~sGi~PTG~lHLGnyig~i~~~~~lQ~~~~~~i~IADlhA~t~~~--~~~~l~~~~~~~~~~~lA~GlDp~kt~i~ 155 (359)
++++|+|++|||.+|||||+|+++.|..+|.+++++|+||||||+|++. +++.+++++++++++|+||||||+|++||
T Consensus 2 ~~~v~~G~~PTG~~HlG~~l~~~~~~~~~q~~~~~~i~IaD~ha~t~~~~~~~~~~~~~~~~~~~~~lA~GlDp~k~~if 81 (328)
T TIGR00233 2 KFRVLTGIQPSGKMHLGHYLGAIQTKWLQQFGVELFICIADLHAITVKDNTDPDALRKAREELAADILAVGLDPKKTFIF 81 (328)
T ss_pred CCEEEEeeCCCcHhHHHHHHHHHHHHHHHhCCCCEEEEeecchhhcCCCCCCHHHHHHHHHHHHHHHHHhCcChhheEEE
Confidence 6799999999999999999999999999999999999999999999866 88999999999999999999999999999
Q ss_pred EccCcchhhHHHHHHhccCCHHHHhchhhHHHHHhhhCCCCcccccchhhHHHhhhhhhcccceeecccchHHHHHHHHH
Q 018259 156 VQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRE 235 (359)
Q Consensus 156 ~qS~~~~~~eL~w~L~~~~~i~~L~r~~~~k~~~~~~~~~~~~~g~l~YPvLQAADIl~~~adivpvG~DQ~~hieLaRd 235 (359)
+||++++|.+|.|+|+|.+++++|+|+.+||++.. . +++++|+|+||+|||||||+|++|+||||+||+||+|||||
T Consensus 82 ~qS~~~e~~el~~~l~~~~t~~~l~r~~~~k~k~~--~-~~~~~g~l~YP~lqaaDil~~~~d~vpvG~DQ~~h~elaRd 158 (328)
T TIGR00233 82 LQSDYPEHYELAWLLSCQVTFGELKRMTQFKDKSQ--A-ENVPIGLFSYPVLQAADILLYQADLVPVGIDQDQHLELTRD 158 (328)
T ss_pred EcCCcHHHHHHHHHHHccCCHHHHHhccCcchhcc--C-CCCCchhhcchHHHHhhhhhcCCCeeecccccHHHHHHHHH
Confidence 99999999999999999999999999999998752 2 57899999999999999999999999999999999999999
Q ss_pred HHHHhhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCcCCCCCCCCCCeeecCCCHHHHHHHhhhccCCC
Q 018259 236 LAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRCKTDS 315 (359)
Q Consensus 236 ia~k~n~~~g~~~~~~~~~~~~~~~~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~~s~I~L~D~p~~I~kKI~rA~Td~ 315 (359)
||+|||+.||. +|++|++++++..++|||| +| +|||||+| +|+|+|+|+|++|++||++|+||+
T Consensus 159 ia~r~n~~~~~------------~f~~P~~l~~~~~~~l~gl-~~-~KMSKS~~--~s~I~L~D~~e~I~~KI~~a~td~ 222 (328)
T TIGR00233 159 LAERFNKKFKN------------FFPKPESLISKFFPRLMGL-SG-KKMSKSDP--NSAIFLTDTPKQIKKKIRKAATDG 222 (328)
T ss_pred HHHHhhhhcCc------------ccCCChhhhccccCCCCCC-CC-CcCCCCCC--CCeEeecCCHHHHHHHHHhcCCCC
Confidence 99999999973 3889999998777889999 55 79999997 489999999999999999999999
Q ss_pred CCCcccCCCCCCCcchHHHHHHHcCC-----CCHHHHHHHhccC--Cccc
Q 018259 316 SAGLEFDNLERPECNNLLSIYQLISG-----KTKGEVAEECQNM--NWGS 358 (359)
Q Consensus 316 ~~~i~~~~~~~p~v~nl~~i~~~~~~-----~~~~~v~~~~~~~--~~g~ 358 (359)
.+.+.|+++++||++|++.+|+++.. ++++++.++|..+ ++|+
T Consensus 223 ~~~~~~~~~~~~g~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 272 (328)
T TIGR00233 223 GRVTLFEHREKGGVPNLLVIYQYLSFFLIDDDKLKEIYEKYKSGKLLYGE 272 (328)
T ss_pred CCCcccCcCCCCCCchHHHHHHHhhccCCCcchHHHHHHHHhcCCCChHH
Confidence 98899999999999999999998754 3578999999655 4554
No 10
>cd00806 TrpRS_core catalytic core domain of tryptophanyl-tRNA synthetase. Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. TrpRS is a homodimer which attaches Tyr to the appropriate tRNA. TrpRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding
Probab=100.00 E-value=3e-71 Score=533.23 Aligned_cols=262 Identities=46% Similarity=0.763 Sum_probs=244.0
Q ss_pred eEEEeeCCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEeccceecCCC-CHHHHHHHHHHHHHHHHHcCcCCCccEEEEc
Q 018259 80 RIVSGVQPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPY-DTQQLSKATRETAAIYLACGIDNSKASVFVQ 157 (359)
Q Consensus 80 ~i~sGi~PTG~lHLGnyig~i~~~~~lQ~-~~~~~i~IADlhA~t~~~-~~~~l~~~~~~~~~~~lA~GlDp~kt~i~~q 157 (359)
++|+|++|||.+|||||++++++|++||+ +++++|+|||+||+|++. +++++++++++++++|+|+|+||+|+.||+|
T Consensus 1 ~i~tG~~PTG~lHLG~~~~al~~~~~lQ~ag~~~~~~IaD~ha~t~~~~~~~~~~~~~~~~~~~~lA~G~dp~k~~i~~q 80 (280)
T cd00806 1 RVLSGIQPSGSLHLGHYLGAFRFWVWLQEAGYELFFFIADLHALTVKQLDPEELRQNTRENAKDYLACGLDPEKSTIFFQ 80 (280)
T ss_pred CEEEeeCCCchhhHHHHHHHHHHHHHHHhCCCCEEEEecchHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCcccCEEEEc
Confidence 58999999999999999999999999999 999999999999999977 9999999999999999999999999999999
Q ss_pred cCcchhhHHHHHHhccCCHHHHhchhhHHHHHhhhCCCCcccccchhhHHHhhhhhhcccceeecccchHHHHHHHHHHH
Q 018259 158 SHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELA 237 (359)
Q Consensus 158 S~~~~~~eL~w~L~~~~~i~~L~r~~~~k~~~~~~~~~~~~~g~l~YPvLQAADIl~~~adivpvG~DQ~~hieLaRdia 237 (359)
|++++|.++.|+|+|.+++++|+|+.+||++.+. .+++++|+++||+||||||++|++|+||||.||+||+||+||+|
T Consensus 81 S~~~~~~~l~~~l~~~~~~~~l~r~~~fk~~~~~--~~~~~~g~~~YP~lqaaDil~~~~~~vpvG~DQ~~h~~l~Rdia 158 (280)
T cd00806 81 SDVPEHYELAWLLSCVVTFGELERMTGFKDKSAQ--GESVNIGLLTYPVLQAADILLYKACLVPVGIDQDPHLELTRDIA 158 (280)
T ss_pred CCcHHHHHHHHHHhCcCCHHHHHhccchhhhhcc--CCCCcchhhcchHHHHhhhhhccCCEEeeccccHHHHHHHHHHH
Confidence 9999999999999999999999999999998763 26789999999999999999999999999999999999999999
Q ss_pred HHhhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCcCCCCCCCCCCeeecCCCHHHHHHHhhhccCCCCC
Q 018259 238 ERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRCKTDSSA 317 (359)
Q Consensus 238 ~k~n~~~g~~~~~~~~~~~~~~~~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~~s~I~L~D~p~~I~kKI~rA~Td~~~ 317 (359)
+|||++||. .|++|+.++++ +++||||++|++|||||++ +|+|+|+|+|++|++|||+|+||+..
T Consensus 159 ~r~n~~~~~------------~~~~P~~l~~~-~~~i~~l~g~~~KMSKS~~--~~~I~L~d~~~~i~~KI~~a~td~~~ 223 (280)
T cd00806 159 RRFNKLYGE------------IFPKPAALLSK-GAFLPGLQGPSKKMSKSDP--NNAIFLTDSPKEIKKKIMKAATDGGR 223 (280)
T ss_pred HHhcccccc------------ccCCCeeeccC-CCccccCCCCCCcccCCCC--CCeEEeeCCHHHHHHHHHhccCCCCC
Confidence 999999874 48999999987 4899999777789999986 59999999999999999999999988
Q ss_pred CcccCCCCCCCcchHHHHHHHcCCCCHHHHH--HHhcc--CCccc
Q 018259 318 GLEFDNLERPECNNLLSIYQLISGKTKGEVA--EECQN--MNWGS 358 (359)
Q Consensus 318 ~i~~~~~~~p~v~nl~~i~~~~~~~~~~~v~--~~~~~--~~~g~ 358 (359)
++.|+.+++|+++|+++||++|++.+.++++ ++|.. .+||+
T Consensus 224 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 268 (280)
T cd00806 224 TEHRRDGGGPGVSNLVEIYSAFFNDDDEELEEIDEYRSGGLGYGE 268 (280)
T ss_pred ceecCCCCCCCcChHHHHHHHHhCCCHHHHHHHHHhhcCCCCHHH
Confidence 8889999999999999999999988888887 67754 45544
No 11
>PRK12285 tryptophanyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=5.8e-67 Score=519.96 Aligned_cols=252 Identities=27% Similarity=0.346 Sum_probs=232.7
Q ss_pred CCceEEEeeCCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEeccceecC-CCCHHHHHHHHHHHHHHHHHcCcCCCccEE
Q 018259 77 VKKRIVSGVQPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITL-PYDTQQLSKATRETAAIYLACGIDNSKASV 154 (359)
Q Consensus 77 ~~~~i~sGi~PTG~lHLGnyig~i~~~~~lQ~-~~~~~i~IADlhA~t~-~~~~~~l~~~~~~~~~~~lA~GlDp~kt~i 154 (359)
+++++|||++|||.+|||||++ +.+|++||+ +++++|+|||+||+++ ..+++++++++++++++|+|+|+||+|+.|
T Consensus 65 ~~~~iytG~~PSG~lHLGh~~~-~~~~~~lQ~~g~~~~i~IaD~ha~~~~~~~~e~~~~~~~~~~~~~lA~G~Dp~k~~i 143 (368)
T PRK12285 65 KPFAVYTGFMPSGPMHIGHKMV-FDELKWHQEFGANVYIPIADDEAYAARGLSWEETREWAYEYILDLIALGFDPDKTEI 143 (368)
T ss_pred CCeEEEEccCCCCCccHHHHHH-HHHHHHHHhcCCCEEEEecchHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCccceEE
Confidence 4789999999999999999986 689999999 7999999999999998 579999999999999999999999999999
Q ss_pred EEccCcchhhHHHHHHhccCCHHHHhchhhHHHHHhhhCCCCcccccchhhHHHhhhhhh------cccceeecccchHH
Q 018259 155 FVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILL------YQSDFVPVGEDQKQ 228 (359)
Q Consensus 155 ~~qS~~~~~~eL~w~L~~~~~i~~L~r~~~~k~~~~~~~~~~~~~g~l~YPvLQAADIl~------~~adivpvG~DQ~~ 228 (359)
|+||++++|.++.|.+++.+++++|+|+.+|+ +++++|+++||+|||||||+ +++|+||||+||+|
T Consensus 144 ~~qS~~~~~~~l~~~l~~~~t~~~l~r~~~f~--------~~~~~g~~~YP~lQaADil~~~~~~~~~~~lvPvG~DQ~~ 215 (368)
T PRK12285 144 YFQSENIKVYDLAFELAKKVNFSELKAIYGFT--------GETNIGHIFYPATQAADILHPQLEEGPKPTLVPVGIDQDP 215 (368)
T ss_pred EECCchHHHHHHHHHHHhhCcHHHHHHhhCCC--------CCCchhhhhhhHHHHHHHHhhcccccCCceEEEeccchHH
Confidence 99999999999999999999999999998885 46799999999999999999 78899999999999
Q ss_pred HHHHHHHHHHHhhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCcCCCCCCCCCCeeecCCCHHHHHHHh
Q 018259 229 HLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKI 308 (359)
Q Consensus 229 hieLaRdia~k~n~~~g~~~~~~~~~~~~~~~~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~~s~I~L~D~p~~I~kKI 308 (359)
|+|||||+|+|||+.|| |++|.++++ +++||| +| +|||||+| +|+|+|+|+|++|++||
T Consensus 216 h~~ltRdiA~r~n~~~g--------------f~~P~~l~~---~~lpgL-~G-~KMSkS~~--~s~I~L~D~p~~I~kKI 274 (368)
T PRK12285 216 HIRLTRDIAERLHGGYG--------------FIKPSSTYH---KFMPGL-TG-GKMSSSKP--ESAIYLTDDPETVKKKI 274 (368)
T ss_pred HHHHHHHHHHHHhhhcC--------------CCCchhHhh---hcccCC-CC-CcCCCCCC--CCeeeccCCHHHHHHHH
Confidence 99999999999999987 678999987 679999 56 69999997 59999999999999999
Q ss_pred hhccCCCCCCccc--CCCCCCCcchHHHHHHHcC---CCCHHHHHHHhccC--Cccc
Q 018259 309 KRCKTDSSAGLEF--DNLERPECNNLLSIYQLIS---GKTKGEVAEECQNM--NWGS 358 (359)
Q Consensus 309 ~rA~Td~~~~i~~--~~~~~p~v~nl~~i~~~~~---~~~~~~v~~~~~~~--~~g~ 358 (359)
++|+||++.++++ ..+++|+++|+++||.+|. +++++++.++|+++ .+|+
T Consensus 275 ~kA~Td~~~t~~~~~~~~g~p~~~~v~~~l~~~~~~~d~~~eei~~~y~~g~~~~g~ 331 (368)
T PRK12285 275 MKALTGGRATLEEQRKLGGEPDECVVYELLLYHLEEDDKELKEIYEECRSGELLCGE 331 (368)
T ss_pred HhCcCCCCcccccccccCCCCCcchHHHHHHHHhcCCCccHHHHHHHHhcCCCCHHH
Confidence 9999999988765 4578999999999999985 47899999999765 4444
No 12
>PRK08560 tyrosyl-tRNA synthetase; Validated
Probab=100.00 E-value=1.5e-62 Score=482.36 Aligned_cols=242 Identities=26% Similarity=0.385 Sum_probs=216.0
Q ss_pred CCCceEEEeeCCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEeccceecCC-CCHHHHHHHHHHHHHHHHHcCcCCCccE
Q 018259 76 SVKKRIVSGVQPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLP-YDTQQLSKATRETAAIYLACGIDNSKAS 153 (359)
Q Consensus 76 ~~~~~i~sGi~PTG~lHLGnyig~i~~~~~lQ~-~~~~~i~IADlhA~t~~-~~~~~l~~~~~~~~~~~lA~GlDp~kt~ 153 (359)
.+++++|+||+|||.+||||++. +++|++||+ +++++|+||||||++++ .+++++++++++++++|+|+|+||+|++
T Consensus 28 ~~~~~v~~G~~PTG~lHLG~~~~-~~~~~~lq~~g~~~~i~IaD~ha~~~~~~~~~~i~~~~~~~~~~~~A~G~dp~k~~ 106 (329)
T PRK08560 28 KEEPKAYIGFEPSGKIHLGHLLT-MNKLADLQKAGFKVTVLLADWHAYLNDKGDLEEIRKVAEYNKKVFEALGLDPDKTE 106 (329)
T ss_pred CCCCEEEEccCCCCcchhhhhHH-HHHHHHHHHCCCeEEEEEccchhhcCCCCCHHHHHHHHHHHHHHHHHcCCChhheE
Confidence 35789999999999999999764 789999999 99999999999999985 6999999999999999999999999999
Q ss_pred EEEccCcchhhHHHHH----HhccCCHHHHhchhhHHHHHhhhCCCCcccccchhhHHHhhhhhhcccceeecccchHHH
Q 018259 154 VFVQSHVRAHVELMWL----LSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQH 229 (359)
Q Consensus 154 i~~qS~~~~~~eL~w~----L~~~~~i~~L~r~~~~k~~~~~~~~~~~~~g~l~YPvLQAADIl~~~adivpvG~DQ~~h 229 (359)
||+||++++|.+ +|. |++.+++++|+|+.+++.+ . . ++.++|+|+||+||||||++|++|+||||.||+||
T Consensus 107 i~~qS~~~~~~~-~~~~~~~l~~~~~~~~l~r~~~~~~~--~-~-~~~~~g~l~YP~lqaaDil~~~ad~vpvG~DQ~~h 181 (329)
T PRK08560 107 FVLGSEFQLDKE-YWLLVLKLAKNTTLARARRSMTIMGR--R-M-EEPDVSKLVYPLMQVADIFYLDVDIAVGGMDQRKI 181 (329)
T ss_pred EEecchhhccch-HHHHHHHHHhhccHHHHHHhhhhhcc--c-C-CCCCHHHHHHHHHHHHHHHHhCCCEEEechhHHHH
Confidence 999999998875 555 9999999999999888743 1 1 34599999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCcCCCCCCCCCCeeecCCCHHHHHHHhh
Q 018259 230 LELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIK 309 (359)
Q Consensus 230 ieLaRdia~k~n~~~g~~~~~~~~~~~~~~~~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~~s~I~L~D~p~~I~kKI~ 309 (359)
++|+||||+|||+ ..|..++. ++||||+++++|||||+| +|+|+|+|+|++|++||+
T Consensus 182 ~~l~Rdia~~~n~------------------~~p~~l~~---~~l~~L~g~~~KMSKS~p--~~~I~L~D~~~~I~~KI~ 238 (329)
T PRK08560 182 HMLAREVLPKLGY------------------KKPVCIHT---PLLTGLDGGGIKMSKSKP--GSAIFVHDSPEEIRRKIK 238 (329)
T ss_pred HHHHHHhhHhcCC------------------CCceEEEc---CccCCCCCCCCCCcCCCC--CCeecccCCHHHHHHHHH
Confidence 9999999999983 35877776 679999666669999997 699999999999999999
Q ss_pred hccCCCCCCcccCCCCCCCcchHHHHHHHcCC--------------------CCHHHHHHHhccCC
Q 018259 310 RCKTDSSAGLEFDNLERPECNNLLSIYQLISG--------------------KTKGEVAEECQNMN 355 (359)
Q Consensus 310 rA~Td~~~~i~~~~~~~p~v~nl~~i~~~~~~--------------------~~~~~v~~~~~~~~ 355 (359)
+|+||+ +.|+.+|+++|+..|.. .+++++.++|.+++
T Consensus 239 kA~t~~---------~~~~~n~v~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~~eel~~~y~~g~ 295 (329)
T PRK08560 239 KAYCPP---------GEVEGNPVLEIAKYHIFPRYDPFVIERPEKYGGDLEYESYEELERDYAEGK 295 (329)
T ss_pred hccCCC---------CCcCCCcHHHHHHHHhhccccceEEechhhcCCCCCcCCHHHHHHHHHcCC
Confidence 999986 34778889999999752 47899999998765
No 13
>PTZ00126 tyrosyl-tRNA synthetase; Provisional
Probab=100.00 E-value=3e-61 Score=481.06 Aligned_cols=248 Identities=22% Similarity=0.308 Sum_probs=213.1
Q ss_pred CCCceEEEeeCCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEeccceecCC---CCHHHHHHHHHHHHHHHHHcCcCCCc
Q 018259 76 SVKKRIVSGVQPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLP---YDTQQLSKATRETAAIYLACGIDNSK 151 (359)
Q Consensus 76 ~~~~~i~sGi~PTG~lHLGnyig~i~~~~~lQ~-~~~~~i~IADlhA~t~~---~~~~~l~~~~~~~~~~~lA~GlDp~k 151 (359)
.++++||+||+|||++||||++..+.+|++||+ |++++|+||||||++++ .++++++++++++++.|+|+|+||+|
T Consensus 64 ~~~~~v~~G~~PTG~lHLG~g~i~~~~~~~lq~~G~~v~~~IaD~hA~~~~~~g~~l~~i~~~~~~~~~~~~A~GlDp~k 143 (383)
T PTZ00126 64 KERPICYDGFEPSGRMHIAQGILKAINVNKLTKAGCVFVFWVADWFALLNNKMGGDLEKIRKVGEYFIEVWKAAGMDMDN 143 (383)
T ss_pred CCCCEEEEEECCCCcccccchHhHhHHHHHHHhCCCeEEEEEccceeecCCCCCCCHHHHHHHHHHHHHHHHHhCCCccc
Confidence 467899999999999999994333348999999 89999999999999984 59999999999999999999999999
Q ss_pred cEEEEccC-cchhhHHHHHHhc----cCCHHHHhchhhHHHHHhhhCCCCcccccchhhHHHhhhhhhcccceeecccch
Q 018259 152 ASVFVQSH-VRAHVELMWLLSS----ATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQ 226 (359)
Q Consensus 152 t~i~~qS~-~~~~~eL~w~L~~----~~~i~~L~r~~~~k~~~~~~~~~~~~~g~l~YPvLQAADIl~~~adivpvG~DQ 226 (359)
++||+||+ +++|.+++|++.+ .+++++++|+.+++++.. .+++++|+|+||+||||||+++++|+||||.||
T Consensus 144 ~~i~~qS~~v~~~~~l~w~~~~~la~~~tl~r~~r~~~~~~r~~---~~~~~~g~l~YP~LQaaDil~l~adivpvG~DQ 220 (383)
T PTZ00126 144 VRFLWASEEINKNPNDYWLRVMDIARSFNITRIKRCSQIMGRSE---GDEQPCAQILYPCMQCADIFYLKADICQLGMDQ 220 (383)
T ss_pred eEEEECChhhhhhhHHHHHHHHHHhccCCHHHHHhhhhhhcccc---CCCCCchhhhhhHHHhhhhhccCCCEEEeCccH
Confidence 99999998 6789999998766 469999999999875432 256789999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCcCCCCCCCCCCeeecCCCHHHHHH
Q 018259 227 KQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIAN 306 (359)
Q Consensus 227 ~~hieLaRdia~k~n~~~g~~~~~~~~~~~~~~~~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~~s~I~L~D~p~~I~k 306 (359)
+||++|+||+|++||+++ .|..++. ++||||+||.+|||||+| +++|+|+|+|++|++
T Consensus 221 ~~~~~LaRdia~~~~~~~-----------------~~~~~~~---~~lpgL~dg~~KMSKS~~--ns~I~L~Dspe~I~k 278 (383)
T PTZ00126 221 RKVNMLAREYCDKKKIKK-----------------KPIILSH---HMLPGLLEGQEKMSKSDP--NSAIFMEDSEEDVNR 278 (383)
T ss_pred HHHHHHHHHHHHHhCCCC-----------------Cceeecc---cccccCCCCCCCCCcCCC--CCeecCCCCHHHHHH
Confidence 999999999999999532 3554443 889999888899999997 589999999999999
Q ss_pred HhhhccCCCCCCcccCCCCCCCcchHHHHHHHcC--------------------CCCHHHHHHHhccCCcc
Q 018259 307 KIKRCKTDSSAGLEFDNLERPECNNLLSIYQLIS--------------------GKTKGEVAEECQNMNWG 357 (359)
Q Consensus 307 KI~rA~Td~~~~i~~~~~~~p~v~nl~~i~~~~~--------------------~~~~~~v~~~~~~~~~g 357 (359)
|||+|+||+. .++.+++++|+..+. ..+++++.++|.++.++
T Consensus 279 KI~kA~t~p~---------~~~~npv~~~~~~~~~~~~~~~~I~r~~k~gg~~~~~~~eel~~~y~~g~l~ 340 (383)
T PTZ00126 279 KIKKAYCPPG---------VIEGNPILAYFKSIVFPAFNSFTVLRKEKNGGDVTYTTYEELEKDYLSGALH 340 (383)
T ss_pred HHHhCcCCCC---------CCCCCcchhhhhhcccccccceeEeccccccCccCcCCHHHHHHHHhcCCCC
Confidence 9999999863 344556777777532 25799999999876643
No 14
>PTZ00348 tyrosyl-tRNA synthetase; Provisional
Probab=100.00 E-value=5e-58 Score=483.08 Aligned_cols=257 Identities=23% Similarity=0.352 Sum_probs=222.6
Q ss_pred CCceEEEeeCCCCcchhhh-HHHHHHHHHHHhccCcEEEEEeccceecCC---CCHHHHHHHHHHHHHHHHHcCcCCCcc
Q 018259 77 VKKRIVSGVQPTGSIHLGN-YLGAIKNWIALQNSYETLFFIVDLHAITLP---YDTQQLSKATRETAAIYLACGIDNSKA 152 (359)
Q Consensus 77 ~~~~i~sGi~PTG~lHLGn-yig~i~~~~~lQ~~~~~~i~IADlhA~t~~---~~~~~l~~~~~~~~~~~lA~GlDp~kt 152 (359)
++++||+||+|||++|||| ++++++.|+.+|.+++++|+||||||+|++ .++++++.++++++++|+|+|+||+|+
T Consensus 31 ~~~rv~sGi~PTG~lHLGng~~~aik~~~~~q~g~~~~~lIAD~HAlt~~~~~~~l~~i~~~~~~~~~~~lA~GlDpeK~ 110 (682)
T PTZ00348 31 PLIRCYDGFEPSGRMHIAQGIFKAVNVNKCTQAGCEFVFWVADWFALMNDKVGGELEKIRIVGRYLIEVWKAAGMDMDKV 110 (682)
T ss_pred CCCEEEEeeCCCCcCeeccHHHHHHHHHHHHhCCCeEEEEEcchhhhcCCCCCCCHHHHHHHHHHHHHHHHHcCCCccce
Confidence 4689999999999999999 467777788788899999999999999973 488999998999999999999999999
Q ss_pred EEEEccC-cchhhHHHHHHhccCCHHHHhchhhHHHHHhhhC--CCCcccccchhhHHHhhhhhhcccceeecccchHHH
Q 018259 153 SVFVQSH-VRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAG--GENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQH 229 (359)
Q Consensus 153 ~i~~qS~-~~~~~eL~w~L~~~~~i~~L~r~~~~k~~~~~~~--~~~~~~g~l~YPvLQAADIl~~~adivpvG~DQ~~h 229 (359)
+||+||+ +++|.+++|++ .++++++.++.++|++.+..+ ++++++|+++||+||||||++|++|+||||.||+||
T Consensus 111 ~~~~qSd~i~e~~el~w~l--v~~v~~l~t~~q~K~~~~~~g~~~~~i~~gll~YPvLQAADIl~l~adivpvG~DQ~qh 188 (682)
T PTZ00348 111 LFLWSSEEITNHANTYWRT--VLDIGRQNTIARIKKCCTIMGKTEGTLTAAQVLYPLMQCADIFFLKADICQLGLDQRKV 188 (682)
T ss_pred EEEECcHhhhhhhHHHHHH--HHHHHHHhhHHHHHHHHHhhcccCCCCchHHHhhhHHHhhcccccCCCEEEeCccHHHH
Confidence 9999997 88999999998 467899999999987644222 235899999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCcCCCCCCCCCCeeecCCCHHHHHHHhh
Q 018259 230 LELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIK 309 (359)
Q Consensus 230 ieLaRdia~k~n~~~g~~~~~~~~~~~~~~~~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~~s~I~L~D~p~~I~kKI~ 309 (359)
++||||+|+++|+.+ .|..+.. ++||||++|++|||||+| +|+|+|+|+|++|++||+
T Consensus 189 ~eLaRdia~~~g~~~-----------------kpvil~~---~~LpGL~gg~~KMSKS~p--~naI~L~Dspe~I~kKI~ 246 (682)
T PTZ00348 189 NMLAREYCDLIGRKL-----------------KPVILSH---HMLAGLKQGQAKMSKSDP--DSAIFMEDTEEDVARKIR 246 (682)
T ss_pred HHHHHHHHHHhCCCC-----------------Cceeccc---ccCcCCCCCCCcCCCCCC--CCeecccCCHHHHHHHHH
Confidence 999999999998432 2443333 889999878789999997 599999999999999999
Q ss_pred hccCCCCC--CcccCCCCCC----CcchHHHHHHHcC-----------C---CCHHHHHHHhccCCcc
Q 018259 310 RCKTDSSA--GLEFDNLERP----ECNNLLSIYQLIS-----------G---KTKGEVAEECQNMNWG 357 (359)
Q Consensus 310 rA~Td~~~--~i~~~~~~~p----~v~nl~~i~~~~~-----------~---~~~~~v~~~~~~~~~g 357 (359)
+|+||+.+ .++.+++++| +.+|+++||+++. + .+++++.+.|.++++|
T Consensus 247 kA~td~~~~~~~~~~d~g~p~~~~e~npvl~i~~~~if~~~g~~~~i~~~~~~~~eele~~y~~g~l~ 314 (682)
T PTZ00348 247 QAYCPRVKQSASEITDDGAPVATDDRNPVLDYFQCVVYARPGAVATIDGTTYATYEDLEQAFVSDEVS 314 (682)
T ss_pred hCCCCCCcCcccccCCCCCccccCCCCcHHHHHHHHhccccchhcccCCcccCcHHHHHHHHhcCCCC
Confidence 99999863 4677788888 8899999999972 2 5689999999876644
No 15
>cd00395 Tyr_Trp_RS_core catalytic core domain of tyrosinyl-tRNA and tryptophanyl-tRNA synthetase. Tyrosinyl-tRNA synthetase (TyrRS)/Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. These enzymes attach Tyr or Trp, respectively, to the appropriate tRNA. These class I enzymes are homodimers, which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=100.00 E-value=7.6e-57 Score=431.90 Aligned_cols=236 Identities=26% Similarity=0.399 Sum_probs=210.8
Q ss_pred eEEEeeCCCC-cchhhhHHHHHHHHHHHhc-cCcEEEEEeccceecCCC----------CHHHHHHHHHHHHHHHHHcCc
Q 018259 80 RIVSGVQPTG-SIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPY----------DTQQLSKATRETAAIYLACGI 147 (359)
Q Consensus 80 ~i~sGi~PTG-~lHLGnyig~i~~~~~lQ~-~~~~~i~IADlhA~t~~~----------~~~~l~~~~~~~~~~~lA~Gl 147 (359)
.+|+||+||| .+|||||++ +++|++||+ +++++++|||+||+++.. +++.+++++++++++|+|+|+
T Consensus 1 ~iy~G~~PTg~~lHlGh~~~-l~~~~~lq~~g~~~~~~I~d~~a~~~d~sg~~~~r~~~~~~~i~~n~~~~~~~~~a~g~ 79 (273)
T cd00395 1 TLYCGIDPTADSLHIGHLIG-LLTFRRFQHAGHRPIFLIGGQTGIIGDPSGKKSERTLNDPEEVRQNIRRIAAQYLAVGI 79 (273)
T ss_pred CeEEeEcCCCCCccHHHHHH-HHHHHHHHHCCCCEEEEEecCceeeCCCCCccccccCCCHHHHHHHHHHHHHHHHHhcC
Confidence 4899999999 699999999 789999999 899999999999999843 789999999999999999999
Q ss_pred C--CCccEEEEccCcc---hhhHHHHHHhccCCHHHHhchhhHHHHHhhhCCCCcccccchhhHHHhhhhhhccc----c
Q 018259 148 D--NSKASVFVQSHVR---AHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQS----D 218 (359)
Q Consensus 148 D--p~kt~i~~qS~~~---~~~eL~w~L~~~~~i~~L~r~~~~k~~~~~~~~~~~~~g~l~YPvLQAADIl~~~a----d 218 (359)
| |+|++||.||+|+ +|.++.|.+++.+++++|.|+.+||++.. +++++|+|+||+||||||+++++ |
T Consensus 80 d~~p~k~~i~~ns~~~~~~~~~~l~~~l~~~~~~~~l~~~~~~k~r~~----~~~~~~~~~Yp~lQaaD~l~l~~~~~~~ 155 (273)
T cd00395 80 FEDPTQATLFNNSDWPGPLAHIQFLRDLGKHVYVNYMERKTSFQSRSE----EGISATEFTYPPLQAADFLLLNTTEGCD 155 (273)
T ss_pred cCCCcceEEEEccccCCcccHHHHHHHHHccCcHHHHHhChHHHHHhc----CCCCchhhhhHHHHHHHHHHHhcccCCc
Confidence 9 9999999999999 89999999999999999999999998752 56899999999999999999988 9
Q ss_pred eeecccchHHHHHHHHHHHHHhhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCcCCCCCCCCCCeeecC
Q 018259 219 FVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLL 298 (359)
Q Consensus 219 ivpvG~DQ~~hieLaRdia~k~n~~~g~~~~~~~~~~~~~~~~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~~s~I~L~ 298 (359)
+||||.||++|++++||+|+|+|. |+.|..++. ++||+| +| .|||||.++.-..|+++
T Consensus 156 ~vp~G~DQ~~~i~l~rdla~r~n~-----------------~~~p~~l~~---p~l~~l-~G-~KMSKS~~~~i~l~~~~ 213 (273)
T cd00395 156 IQPGGSDQWGNITLGRELARRFNG-----------------FTIAEGLTI---PLVTKL-DG-PKFGKSESGPKWLDTEK 213 (273)
T ss_pred EEEecHHHHHHHHHHHHHHHHhCC-----------------CCCCeEEee---ccccCC-CC-CcCCCCCCCCccccccC
Confidence 999999999999999999999982 456888887 679999 66 49999986422235579
Q ss_pred CCHHHHHHHhhhccCCCCCCcccCCCCCCCcchHHHHHHHcCCCCHHHHHH----HhccCCccc
Q 018259 299 DPKDVIANKIKRCKTDSSAGLEFDNLERPECNNLLSIYQLISGKTKGEVAE----ECQNMNWGS 358 (359)
Q Consensus 299 D~p~~I~kKI~rA~Td~~~~i~~~~~~~p~v~nl~~i~~~~~~~~~~~v~~----~~~~~~~g~ 358 (359)
|+|++|++||++|+ .+|++.||++|++.+.+|+.+ ++++.++|+
T Consensus 214 dsp~~i~~ki~~a~----------------d~~v~~~~~~~t~~~~~ei~~i~~~~~~~~~~~~ 261 (273)
T cd00395 214 TSPYEFYQFWINAV----------------DSDVINILKYFTFLSKEEIERLEQEQYEAPGYRV 261 (273)
T ss_pred CCHHHHHHHHHccc----------------HhHHHHHHHHHcCCCHHHHHHHHHHHhcCCCHHH
Confidence 99999999999998 358999999999888888877 666666654
No 16
>PF00579 tRNA-synt_1b: tRNA synthetases class I (W and Y); InterPro: IPR002305 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. The class Ia aminoacyl-tRNA synthetases consist of the isoleucyl, methionyl, valyl, leucyl, cysteinyl, and arginyl-tRNA synthetases; the class Ib include the glutamyl and glutaminyl-tRNA synthetases, and the class Ic are the tyrosyl and tryptophanyl-tRNA synthetases [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2JAN_A 3P0J_B 3P0I_B 3P0H_B 1YID_C 2A4M_C 1YIA_C 1YI8_C 2EL7_A 3PRH_A ....
Probab=100.00 E-value=1.4e-57 Score=438.69 Aligned_cols=258 Identities=34% Similarity=0.518 Sum_probs=229.7
Q ss_pred CCCceEEEeeCCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEeccceecCCC---CHHHHHHHHHHHHHH--HHHcCcCC
Q 018259 76 SVKKRIVSGVQPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPY---DTQQLSKATRETAAI--YLACGIDN 149 (359)
Q Consensus 76 ~~~~~i~sGi~PTG~lHLGnyig~i~~~~~lQ~-~~~~~i~IADlhA~t~~~---~~~~l~~~~~~~~~~--~lA~GlDp 149 (359)
.+++++|+||+|||.+||||+ +.+.+|++||+ |++++|+|||+||++++. +++.+++++++++.. ++|+|+||
T Consensus 3 ~~~~~~y~G~~PTg~lHlG~l-~~~~~~~~lq~~g~~~~i~iaD~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~g~d~ 81 (292)
T PF00579_consen 3 NKPFRVYTGIDPTGDLHLGHL-VPIMKLIWLQKAGFKVIILIADLHALLGDPSKGDERKIRSRAEYNINDKAILALGLDP 81 (292)
T ss_dssp HSSEEEEEEEESSSS-BHHHH-HHHHHHHHHHHTTSEEEEEEEHHHHHHTTTTGSSHHHHHHHHHHHHHHHHHHHTTSHT
T ss_pred CCCcEEEEeECCCCcccchHH-HHHHHHHHHHhcCCccceEecchhhcccCcccccHHHHHHHHHHHHHHHHHHHhccCc
Confidence 357899999999999999955 55789999996 899999999999999844 599999999999999 99999999
Q ss_pred CccEEEEccCcchhhHHHHHHhccCCHHHHhchhhHHHHHhhhC-CCCcccccchhhHHHhhhhhhcccceeecccchHH
Q 018259 150 SKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAG-GENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQ 228 (359)
Q Consensus 150 ~kt~i~~qS~~~~~~eL~w~L~~~~~i~~L~r~~~~k~~~~~~~-~~~~~~g~l~YPvLQAADIl~~~adivpvG~DQ~~ 228 (359)
+++.||+||+|+++.++.|++.+..+..+|+|+.++++...+.+ ++++++|+++||+||||||+++++|+||||.||++
T Consensus 82 ~k~~i~~~s~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~Yp~lQaaD~~~l~~~~~~~G~DQ~~ 161 (292)
T PF00579_consen 82 EKTEIFRQSDWPEHMELWWFLSDVARLFSLNRMLRFKDVKKRLKNGEGISLGEFSYPLLQAADILLLKADLVPGGIDQRG 161 (292)
T ss_dssp TTEEEEEGHHHHCHHHHHHHHHHHHBHHHHHHHHHHHHHHHHHSSTTTSBHHHHHHHHHHHHHHHHTTHSEEEEEGGGHH
T ss_pred cceEEEeCCCcccccchhhhhcccccccchhhhhhhcccccccccccCcceeeEEcccccccceeeeccccccccchHHH
Confidence 99999999999999999999999999999999999998555544 35899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCcCCCCCCCCCCeeecCCCHHHHHHHh
Q 018259 229 HLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKI 308 (359)
Q Consensus 229 hieLaRdia~k~n~~~g~~~~~~~~~~~~~~~~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~~s~I~L~D~p~~I~kKI 308 (359)
|++++||+|+|+|.+ . .|+.|..+++ +++|+| +|.+|||||+++ ++|+|+|++++|++||
T Consensus 162 ~~~l~rd~a~k~~~~---~-----------~~~~p~~l~~---~~l~~l-~G~~KMSKS~~n--s~I~L~d~~~~i~~Ki 221 (292)
T PF00579_consen 162 HIELARDLARKFNYK---E-----------IFPKPAGLTS---PLLPGL-DGQKKMSKSDPN--SAIFLDDSPEEIRKKI 221 (292)
T ss_dssp HHHHHHHHHHHHTHH---S-----------TSSS-EEEEE---TCBBST-TSSSBTTTTTTG--GS-BTTTTHHHHHHHH
T ss_pred HHHHHHHHHhhhccc---c-----------cccCchheee---cccccc-CCccccCccCCc--cEEEEeccchhHHHHH
Confidence 999999999999986 1 3778999998 569998 787799999973 7999999999999999
Q ss_pred hhccCCCCCCcccCCCCCCCcch-HHHHHHHcCCC----CHHHHHHHhccC
Q 018259 309 KRCKTDSSAGLEFDNLERPECNN-LLSIYQLISGK----TKGEVAEECQNM 354 (359)
Q Consensus 309 ~rA~Td~~~~i~~~~~~~p~v~n-l~~i~~~~~~~----~~~~v~~~~~~~ 354 (359)
++|+|++...+.+....+|.+++ +++++..+.+. +.+++.++|..+
T Consensus 222 ~~a~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g 272 (292)
T PF00579_consen 222 KKAFCDPDRENPRLLKGRPFISPFLIERLEAFHGNDDYRSLEELLADYVSG 272 (292)
T ss_dssp HHSHTSTTSHHHHHHHHHHTHHHHHHHHHHHHHHHHHESHHHHHHHHHHTT
T ss_pred HHHhhCCCcccccccccCCCCCHHHHHHHHHhcCCcchHHHHHHHHHHccC
Confidence 99999999877777788999999 99999998653 469999999766
No 17
>cd00805 TyrRS_core catalytic core domain of tyrosinyl-tRNA synthetase. Tyrosinyl-tRNA synthetase (TyrRS) catalytic core domain. TyrRS is a homodimer which attaches Tyr to the appropriate tRNA. TyrRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formationof the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=100.00 E-value=6.6e-57 Score=431.27 Aligned_cols=233 Identities=23% Similarity=0.284 Sum_probs=209.4
Q ss_pred ceEEEeeCCCC-cchhhhHHHHHHHHHHHhc-cCcEEEEEeccceecC-C---------CCHHHHHHHHHHHHHHHHHcC
Q 018259 79 KRIVSGVQPTG-SIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITL-P---------YDTQQLSKATRETAAIYLACG 146 (359)
Q Consensus 79 ~~i~sGi~PTG-~lHLGnyig~i~~~~~lQ~-~~~~~i~IADlhA~t~-~---------~~~~~l~~~~~~~~~~~lA~G 146 (359)
.++|+||+||| .+|||||+++ .+|++||+ +++++|+|||+||+++ + .+++++++++++++++|+|+|
T Consensus 1 ~~iy~G~~PTg~~lHLG~~~~~-~~~~~lq~~g~~~~ilI~D~~a~~~~~~~~~~~r~~~~~~~i~~~~~~~~~~~~a~g 79 (269)
T cd00805 1 LKVYIGFDPTAPSLHLGHLVPL-MKLRDFQQAGHEVIVLIGDATAMIGDPSGKSEERKLLDLELIRENAKYYKKQLKAIL 79 (269)
T ss_pred CeEEEeeCCCCCcccHHHHHHH-HHHHHHHHCCCeEEEEECCCeeecCCCCCccccccCCCHHHHHHHHHHHHHHHHHHH
Confidence 37999999999 7999999985 59999999 8999999999999997 5 589999999999999999999
Q ss_pred cC--CCccEEEEccCcchhhHHHHH----HhccCCHHHHhchhhHHHHHhhhCCCCcccccchhhHHHhhhhhhccccee
Q 018259 147 ID--NSKASVFVQSHVRAHVELMWL----LSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFV 220 (359)
Q Consensus 147 lD--p~kt~i~~qS~~~~~~eL~w~----L~~~~~i~~L~r~~~~k~~~~~~~~~~~~~g~l~YPvLQAADIl~~~adiv 220 (359)
+| |+|++||+||+|++| ++|+ +++.+++++|.|+.+||++... .+++++|+++||+||||||+++++|+|
T Consensus 80 ~~~~p~k~~i~~~s~~~~~--l~~~~~l~l~~~~~~~~l~~~~~~k~r~~~--~~~~~~~~~~YP~lQaaDi~~l~~~l~ 155 (269)
T cd00805 80 DFIPPEKAKFVNNSDWLLS--LYTLDFLRLGKHFTVNRMLRRDAVKVRLEE--EEGISFSEFIYPLLQAYDFVYLDVDLQ 155 (269)
T ss_pred ccCCCcceEEEEchHhhcc--CCHHHHHHHHhhCcHHHHHHHHHHHHHHhc--CCCCcHHHHHHHHHHHhhHHHHhCCee
Confidence 97 999999999999988 7787 9999999999999999987542 257899999999999999999999999
Q ss_pred ecccchHHHHHHHHHHHHHhhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCcCCCCCCCCCCe-eecCC
Q 018259 221 PVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSR-INLLD 299 (359)
Q Consensus 221 pvG~DQ~~hieLaRdia~k~n~~~g~~~~~~~~~~~~~~~~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~~s~-I~L~D 299 (359)
|||.||++|++++||+|+|||. ..|..+.. ++||++ +| +|||||.++ +. |+++|
T Consensus 156 ~~G~DQ~~~i~~~rd~a~r~~~------------------~~~~~l~~---~ll~~l-~G-~KMSKS~~~--~~~i~l~d 210 (269)
T cd00805 156 LGGSDQRGNITLGRDLIRKLGY------------------KKVVGLTT---PLLTGL-DG-GKMSKSEGN--AIWDPVLD 210 (269)
T ss_pred EecHHHHHHHHHHHHHHHHhCC------------------CCcEEEee---ccccCC-CC-CcccCCCCC--cccccCCC
Confidence 9999999999999999999973 23555554 679999 67 599999863 34 69999
Q ss_pred CHHHHHHHhhhccCCCCCCcccCCCCCCCcchHHHHHHHcCCCCHHHHHHHhccC
Q 018259 300 PKDVIANKIKRCKTDSSAGLEFDNLERPECNNLLSIYQLISGKTKGEVAEECQNM 354 (359)
Q Consensus 300 ~p~~I~kKI~rA~Td~~~~i~~~~~~~p~v~nl~~i~~~~~~~~~~~v~~~~~~~ 354 (359)
+|++|++||++|+|| +|.|++.+|.+++.++++++.++|..+
T Consensus 211 sp~~i~~Ki~~a~~~-------------~v~~~l~~~~~~~~~~~eel~~~~~~~ 252 (269)
T cd00805 211 SPYDVYQKIRNAFDP-------------DVLEFLKLFTFLDYEEIEELEEEHAEG 252 (269)
T ss_pred CHHHHHHHHHcCCcH-------------HHHHHHHHHHcCCHHHHHHHHHHHhcC
Confidence 999999999999998 578999999999889999999999754
No 18
>PLN02486 aminoacyl-tRNA ligase
Probab=100.00 E-value=3.2e-54 Score=430.22 Aligned_cols=249 Identities=19% Similarity=0.253 Sum_probs=210.1
Q ss_pred CCCceEEEeeCCCCc-chhhhHHHHHHHHHHHhc--cCcEEEEEeccceecC-CCCHHHHHHHHHHHHHHHHHcCcCCCc
Q 018259 76 SVKKRIVSGVQPTGS-IHLGNYLGAIKNWIALQN--SYETLFFIVDLHAITL-PYDTQQLSKATRETAAIYLACGIDNSK 151 (359)
Q Consensus 76 ~~~~~i~sGi~PTG~-lHLGnyig~i~~~~~lQ~--~~~~~i~IADlhA~t~-~~~~~~l~~~~~~~~~~~lA~GlDp~k 151 (359)
.+++++|+|++|||. |||||+++++ ....||+ ++.++|+|||+|+++. ..+++++++++++++++|+|+|+||+|
T Consensus 71 ~~~~~vYtG~~PSg~~lHlGHlv~~~-~~~~lQ~~~~~~~~I~iaD~e~~~~~~~~~e~i~~~~~en~~~iiA~G~dp~k 149 (383)
T PLN02486 71 GEKFYLYTGRGPSSEALHLGHLIPFM-FTKYLQDAFKVPLVIQLTDDEKFLWKNLSVEESQRLARENAKDIIACGFDVER 149 (383)
T ss_pred CCCeEEEeCCCCCCccccHHHHHHHH-HHHHHHHhCCCeEEEEecCHHHHhhcCCCHHHHHHHHHHHHHHHHHhCCCCcc
Confidence 347899999999995 9999999976 4445897 5788999999999998 459999999999999999999999999
Q ss_pred cEEEEccCcchhhHHHHHHhccCCHHHHhchhhHHHHHhhhC-CCCcccccchhhHHHhhhhh------hccc-----ce
Q 018259 152 ASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAG-GENVGVALLTYPVLMASDIL------LYQS-----DF 219 (359)
Q Consensus 152 t~i~~qS~~~~~~eL~w~L~~~~~i~~L~r~~~~k~~~~~~~-~~~~~~g~l~YPvLQAADIl------~~~a-----di 219 (359)
+.||.|+++. .+++|.... ++.|+.+++++.+.++ .++.++|+++||+||||||| +++. |+
T Consensus 150 t~I~s~~~~~--~~~~~~~~~-----~l~r~~t~~~~~~~~gf~~~~~ig~~~YP~lQaadi~~~~~~~l~~~~~~~~~l 222 (383)
T PLN02486 150 TFIFSDFDYV--GGAFYKNMV-----KIAKCVTLNQVRGIFGFSGEDNIGKISFPAVQAAPSFPSSFPHLFGGKDKLRCL 222 (383)
T ss_pred eEEEeccHHH--hHhHHHHHH-----HHHhhCcHHHHHHhhCcCCCCCchhhhhHHHHHhhhhhhccHHHhCCCcCCcce
Confidence 9999766653 355554332 4667777777776655 35679999999999999998 4554 99
Q ss_pred eecccchHHHHHHHHHHHHHhhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCcCCCCCCCCCCeeecCC
Q 018259 220 VPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLD 299 (359)
Q Consensus 220 vpvG~DQ~~hieLaRdia~k~n~~~g~~~~~~~~~~~~~~~~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~~s~I~L~D 299 (359)
||||+||+||++|+||+|+|||+ .+|..+++ +++|+|+++.+|||||.| +++|+|+|
T Consensus 223 VPvG~DQd~~~~ltRdia~r~~~------------------~kp~~~~~---~~lp~L~g~~~KMSkS~~--nsaI~L~D 279 (383)
T PLN02486 223 IPCAIDQDPYFRMTRDVAPRLGY------------------YKPALIES---RFFPALQGESGKMSASDP--NSAIYVTD 279 (383)
T ss_pred eecccchHHHHHHHHHHHHHhCC------------------CCcceecc---ccccCCCCCCCcCcCcCC--CCeeeccC
Confidence 99999999999999999999984 25876665 779999776689999997 58999999
Q ss_pred CHHHHHHHhhh-ccCCCCCCccc--CCCCCCCcchHHHHHHHcCC--CCHHHHHHHhccCC
Q 018259 300 PKDVIANKIKR-CKTDSSAGLEF--DNLERPECNNLLSIYQLISG--KTKGEVAEECQNMN 355 (359)
Q Consensus 300 ~p~~I~kKI~r-A~Td~~~~i~~--~~~~~p~v~nl~~i~~~~~~--~~~~~v~~~~~~~~ 355 (359)
+|++|++||++ |+||++.+++. ..+++|+++|+++||.+|.+ ++++++.++|..+.
T Consensus 280 ~p~~i~~KI~k~A~t~~~~t~~~~~~~gg~p~v~~~~~~l~~f~~dd~~~eei~~~y~~G~ 340 (383)
T PLN02486 280 TPKEIKNKINKYAFSGGQDTVEEHRELGANLEVDIPWKYLNFFLEDDAELERIKKEYGSGR 340 (383)
T ss_pred CHHHHHHHHhcCCCCCCCCcccccccCCCCCccchHHHHHHHHcCCchHHHHHHHHhccCC
Confidence 99999999999 99999988765 56899999999999999963 57899999997654
No 19
>PRK05912 tyrosyl-tRNA synthetase; Validated
Probab=100.00 E-value=1e-48 Score=394.35 Aligned_cols=238 Identities=20% Similarity=0.227 Sum_probs=202.8
Q ss_pred CCceEEEeeCCCCc-chhhhHHHHHHHHHHHhc-cCcEEEEEeccceecC-CC---------CHHHHHHHHHHHHHHHHH
Q 018259 77 VKKRIVSGVQPTGS-IHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITL-PY---------DTQQLSKATRETAAIYLA 144 (359)
Q Consensus 77 ~~~~i~sGi~PTG~-lHLGnyig~i~~~~~lQ~-~~~~~i~IADlhA~t~-~~---------~~~~l~~~~~~~~~~~lA 144 (359)
+++++|+||+|||. +|||||++ +.+|++||+ |++++++|||+||+++ |. +.+.+++++.++ ...+|
T Consensus 32 ~~~~vy~G~dPTg~slHlGhlv~-l~~l~~lQ~~G~~~~~ligd~ta~igDpsgk~~~r~~l~~e~i~~n~~~i-~~ql~ 109 (408)
T PRK05912 32 EPLRIYLGFDPTAPSLHLGHLVP-LLKLRRFQDAGHKPIALIGGFTGMIGDPSGKSETRKLLTREQVAENAETI-KEQLF 109 (408)
T ss_pred CCCEEEEeecCCCCCccHHhHHH-HHHHHHHHHCCCcEEEEEcCceeEcCCCCCCchhhccCCHHHHHHHHHHH-HHHHH
Confidence 56899999999995 99999996 689999999 7999999999999996 42 456788888765 44569
Q ss_pred cCcCCCc--cEEEEccCcchhhHHHHHHh---ccCCHHHHhchhhHHHHHhhhCCCCcccccchhhHHHhhhhhhc----
Q 018259 145 CGIDNSK--ASVFVQSHVRAHVELMWLLS---SATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLY---- 215 (359)
Q Consensus 145 ~GlDp~k--t~i~~qS~~~~~~eL~w~L~---~~~~i~~L~r~~~~k~~~~~~~~~~~~~g~l~YPvLQAADIl~~---- 215 (359)
+|+||++ ++||+||+|+++.++.|+|. +.++++++.+..+||.+... .+++++|+|+||+|||||++++
T Consensus 110 ~~ld~~k~~~~i~~nsd~~~~~~~~~~l~~v~~~~~v~~m~~~~~~k~r~~~--~~~is~~ef~Yp~LQa~D~l~l~~~~ 187 (408)
T PRK05912 110 KFLDFEKDGAEIVNNSDWLGKLNAIDFLRDLGKHFTVNRMLERDDFKKRLRE--GQGISFTEFLYPLLQGYDFVALNKRY 187 (408)
T ss_pred HhcCcCcCcEEEEECCCcCCcccHHHHHHHHhhhccHHHHhhcchHHHHhcc--CCCCchhhhhhHHHHHhhHHHHhccC
Confidence 9999999 99999999999999999876 89999999999999876532 2578999999999999999999
Q ss_pred ccceeecccchHHHHHHHHHHHHHhhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCcCCCCCCCCCCee
Q 018259 216 QSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRI 295 (359)
Q Consensus 216 ~adivpvG~DQ~~hieLaRdia~k~n~~~g~~~~~~~~~~~~~~~~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~~s~I 295 (359)
++|+||||.||++|++++||+|+|+|.+ .+..+.. +.|+++ +| +|||||. +|+|
T Consensus 188 ~~~i~~gG~DQ~~ni~~grdla~r~~~~------------------~~~~l~~---plL~~~-~G-~KMsKS~---~naI 241 (408)
T PRK05912 188 GCDLQLGGSDQWGNILSGRDLQRRYGGK------------------PQFGLTM---PLLTGL-DG-KKMGKSE---GNAV 241 (408)
T ss_pred CCCEEeccHHHHHHHHHHHHHHHHhCCC------------------CeEEEec---CCcCCC-CC-CcccCCC---CCce
Confidence 9999999999999999999999999842 1223333 669998 77 8999997 6899
Q ss_pred ecCC---CHHHHHHHhhhccCCCCCCcccCCCCCCCcchHHHHHHHcCCCCHHHHHHHhc-cCCcc
Q 018259 296 NLLD---PKDVIANKIKRCKTDSSAGLEFDNLERPECNNLLSIYQLISGKTKGEVAEECQ-NMNWG 357 (359)
Q Consensus 296 ~L~D---~p~~I~kKI~rA~Td~~~~i~~~~~~~p~v~nl~~i~~~~~~~~~~~v~~~~~-~~~~g 357 (359)
+|+| +|++|++||+++ + ++.+.+++.+|.+++.++++++.++|. +..++
T Consensus 242 ~L~d~~tsp~~i~qki~~~-~------------D~~v~~~l~~~t~~~~~ei~~l~~~~~~g~~~~ 294 (408)
T PRK05912 242 WLDEEKTSPYEMYQKWMNI-S------------DADVWRYLKLLTFLSLEEIEELEEELAEGPNPR 294 (408)
T ss_pred eCCCCCCCHHHHHHHHhcC-C------------hHHHHHHHHHHhcCCHHHHHHHHHHHhcCCChH
Confidence 9999 999999999995 2 356788888888888888999999994 33444
No 20
>PRK13354 tyrosyl-tRNA synthetase; Provisional
Probab=100.00 E-value=1.1e-44 Score=365.09 Aligned_cols=233 Identities=17% Similarity=0.201 Sum_probs=189.1
Q ss_pred CCCceEEEeeCCCCc-chhhhHHHHHHHHHHHhc-cCcEEEEEeccceecC-C---------CCHHHHHHHHHHHHHHHH
Q 018259 76 SVKKRIVSGVQPTGS-IHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITL-P---------YDTQQLSKATRETAAIYL 143 (359)
Q Consensus 76 ~~~~~i~sGi~PTG~-lHLGnyig~i~~~~~lQ~-~~~~~i~IADlhA~t~-~---------~~~~~l~~~~~~~~~~~l 143 (359)
.+++++|+||+|||. +||||+++ +.+|.+||+ |++++++|||+||+++ | .+.+++++++.++.+.+.
T Consensus 31 ~~~~~iy~G~dPT~~sLHlGhlv~-l~~l~~lq~~G~~~~~ligd~ta~igDpsgk~~~R~~l~~e~i~~n~~~i~~q~~ 109 (410)
T PRK13354 31 GKPLTLYLGFDPTAPSLHIGHLVP-LMKLKRFQDAGHRPVILIGGFTGKIGDPSGKSKERKLLTDEQVQHNAKTYTEQIF 109 (410)
T ss_pred CCCcEEEEcccCCCCCcchhhHHH-HHHHHHHHHcCCeEEEEEcccccccCCCCcccccccCCCHHHHHHHHHHHHHHHH
Confidence 357899999999995 99999777 678999999 7999999999999996 3 255789999988888776
Q ss_pred HcCcCCCccEEEEccCcchhhHHHHHH---hccCCHHHHhchhhHHHHHhhhCCCCcccccchhhHHHhhhhhhc----c
Q 018259 144 ACGIDNSKASVFVQSHVRAHVELMWLL---SSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLY----Q 216 (359)
Q Consensus 144 A~GlDp~kt~i~~qS~~~~~~eL~w~L---~~~~~i~~L~r~~~~k~~~~~~~~~~~~~g~l~YPvLQAADIl~~----~ 216 (359)
+ |+||++++|++||+|.++.++.|+| +..++++++.+...|+.+ ...++++++++|+||+|||||++++ +
T Consensus 110 ~-~ld~~k~~i~~ns~w~~~~~~~~~l~~v~~~~tv~~m~~~~~~~~R--~~~~~~is~~ef~YpllQa~D~~~l~~~~~ 186 (410)
T PRK13354 110 K-LFDFEKTEIVNNSDWLSKLNLIDFLRDYGKHFTVNRMLERDDVKSR--LEREQGISFTEFFYPLLQAYDFVHLNRKED 186 (410)
T ss_pred H-hcCccceEEEECccccccccHHHHHHHHHhhccHHHHHhchHHHhh--hccCCCCchhhhccHHHHhhhHHHHhccCC
Confidence 6 8999999999999999988877775 456666665444344422 2113578999999999999999999 9
Q ss_pred cceeecccchHHHHHHHHHHHHHhhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCcCCCCCCCCCCeee
Q 018259 217 SDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRIN 296 (359)
Q Consensus 217 adivpvG~DQ~~hieLaRdia~k~n~~~g~~~~~~~~~~~~~~~~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~~s~I~ 296 (359)
+|++|||.||++|++++||+|+|+|.. .|..+.. +.|+++ ||+ |||||. +|+|+
T Consensus 187 ~~iq~gG~DQ~~ni~~grdl~~r~~~~------------------~~~~lt~---PlL~g~-dG~-KMsKS~---~naI~ 240 (410)
T PRK13354 187 VDLQIGGTDQWGNILMGRDLQRKLEGE------------------EQFGLTM---PLLEGA-DGT-KMGKSA---GGAIW 240 (410)
T ss_pred CCEEEecHHHHHHHHHHHHHHHHhCCC------------------CceEecc---CCccCC-CCC-ccCCCC---CCcee
Confidence 999999999999999999999999853 2444444 668998 785 999996 58999
Q ss_pred cCCC---HHHHHHHhhhccCCCCCCcccCCCCCCCcchHHHHHHHcC---CCCHHHHHHHhccC
Q 018259 297 LLDP---KDVIANKIKRCKTDSSAGLEFDNLERPECNNLLSIYQLIS---GKTKGEVAEECQNM 354 (359)
Q Consensus 297 L~D~---p~~I~kKI~rA~Td~~~~i~~~~~~~p~v~nl~~i~~~~~---~~~~~~v~~~~~~~ 354 (359)
|+|+ |++|++||+++ +| +++++||.+|+ .++++++.++|..+
T Consensus 241 L~d~~tsp~~i~qki~~~-~D---------------~~v~~~l~~~t~l~~~ei~~l~~~~~~~ 288 (410)
T PRK13354 241 LDPEKTSPYEFYQFWMNI-DD---------------RDVVKYLKLFTDLSPDEIDELEAQLETE 288 (410)
T ss_pred ccCCCCCHHHHHHHHHcC-Ch---------------HHHHHHHHHHhCCCHHHHHHHHHHHhcC
Confidence 9999 99999999986 12 23567777765 46788888888653
No 21
>TIGR00234 tyrS tyrosyl-tRNA synthetase. This tyrosyl-tRNA synthetase model starts picking up tryptophanyl-tRNA synthetases at scores of 0 and below. The proteins found by this model have a deep split between two groups. One group contains bacterial and organellar eukaryotic examples. The other contains archaeal and cytosolic eukaryotic examples.
Probab=100.00 E-value=4.2e-43 Score=350.45 Aligned_cols=211 Identities=22% Similarity=0.265 Sum_probs=177.4
Q ss_pred CceEEEeeCCCC-cchhhhHHHHHHHHHHHhc-cCcEEEEEeccceecC-CC---------CHHHHHHHHHHHHHHHHHc
Q 018259 78 KKRIVSGVQPTG-SIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITL-PY---------DTQQLSKATRETAAIYLAC 145 (359)
Q Consensus 78 ~~~i~sGi~PTG-~lHLGnyig~i~~~~~lQ~-~~~~~i~IADlhA~t~-~~---------~~~~l~~~~~~~~~~~lA~ 145 (359)
++++|+||+||| .+||||+++ +.+|.+||+ |++++++|||+||+++ |. +.+++++++ +.++.++|+
T Consensus 30 ~~~vy~G~dPTg~~lHlGh~v~-l~~l~~lq~~G~~~~iligd~ta~igdpsg~~~~R~~~~~~~i~~n~-~~i~~~la~ 107 (377)
T TIGR00234 30 KIKLYVGFDPTAPSLHLGHLVP-LLKLRDFQQAGHEVIVLLGDATALIGDPSGKSEERKLLTREEVQENA-ENIKKQIAR 107 (377)
T ss_pred CCEEEEeeCCCCCCccHHHHHH-HHHHHHHHHCCCcEEEEEeccchhhcCCCChHHHhhcCCHHHHHHHH-HHHHHHHHH
Confidence 689999999999 799999998 678999999 8999999999999997 43 334455555 677889999
Q ss_pred CcCCCccEEEEccCcch---hhHHHHHHhccCCHHHHhchhhHHHHHhhhCCCCcccccchhhHHHhhhhhhcccceeec
Q 018259 146 GIDNSKASVFVQSHVRA---HVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPV 222 (359)
Q Consensus 146 GlDp~kt~i~~qS~~~~---~~eL~w~L~~~~~i~~L~r~~~~k~~~~~~~~~~~~~g~l~YPvLQAADIl~~~adivpv 222 (359)
|+||++++|++||+|.. +.++.|.+++.++++++.+..+|+.+.. +++++++|+||+|||+|++++++|++||
T Consensus 108 gld~~k~~iv~ns~w~~~~~~~~~l~~~~~~~tv~~m~~~~~~~~R~~----~~is~~ef~YpllQa~D~~~l~~di~~g 183 (377)
T TIGR00234 108 FLDFEKAKFVNNSEWLLKLNYIDFIRDLGKIFSVNRMLRRDAFSSRLE----RGISLSEFIYPLLQAYDFVYLNVDLQIG 183 (377)
T ss_pred hCChhheEEEECchhcCcCCHHHHHHHHhCceEHHHHHcccHHHHHHh----cCCCchhhhhHHHHHHHHHHHcCCeeEe
Confidence 99999999999999864 5667777999999999999999985542 3589999999999999999999999999
Q ss_pred ccchHHHHHHHHHHHHHhhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCcCCCCCC------CC--CCe
Q 018259 223 GEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAP------SD--QSR 294 (359)
Q Consensus 223 G~DQ~~hieLaRdia~k~n~~~g~~~~~~~~~~~~~~~~~P~~l~~~~~~~l~sL~dg~~KMSKS~p------~~--~s~ 294 (359)
|.||++|++.+|++|+++|.+. .|.+|.++++ ++ || .|||||.. .+ .++
T Consensus 184 G~DQ~~ni~~g~dLar~~~~~~--------------~~~~t~pLl~-------~~-dg-~KmgKS~~~~i~l~~~~~~~~ 240 (377)
T TIGR00234 184 GSDQWGNIRKGRDLIRRNLPSL--------------GFGLTVPLLT-------PA-DG-EKMGKSGGGAVSLDEGKYDFY 240 (377)
T ss_pred cchhHHHHHHHHHHHHHhcCCC--------------ceeeceeeec-------CC-CC-CCccCCCCCcccCCccHhhhh
Confidence 9999999999999999998542 2556665654 43 45 57777742 12 388
Q ss_pred eecCCCHHHHHHHhhhccCCCCC
Q 018259 295 INLLDPKDVIANKIKRCKTDSSA 317 (359)
Q Consensus 295 I~L~D~p~~I~kKI~rA~Td~~~ 317 (359)
||+.|+||++.+||++++|+...
T Consensus 241 i~~~d~~D~~~~Ki~k~~t~~~~ 263 (377)
T TIGR00234 241 QFWINTPDEDVKKILKLFTFLGL 263 (377)
T ss_pred hhhcCCcHHHHHHHHHHcCCCcH
Confidence 99999999999999999999754
No 22
>KOG2145 consensus Cytoplasmic tryptophanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.1e-38 Score=303.06 Aligned_cols=246 Identities=20% Similarity=0.295 Sum_probs=210.1
Q ss_pred CCCceEEEeeCCCCc-chhhhHHHHH-HHHHHHhccCc--EEEEEeccceecC-CCCHHHHHHHHHHHHHHHHHcCcCCC
Q 018259 76 SVKKRIVSGVQPTGS-IHLGNYLGAI-KNWIALQNSYE--TLFFIVDLHAITL-PYDTQQLSKATRETAAIYLACGIDNS 150 (359)
Q Consensus 76 ~~~~~i~sGi~PTG~-lHLGnyig~i-~~~~~lQ~~~~--~~i~IADlhA~t~-~~~~~~l~~~~~~~~~~~lA~GlDp~ 150 (359)
.+++++|||..||.. |||||.+++| .+| ||+.++ .+|.+.|.+.++. .-..++..+.+++++++++|+|+||.
T Consensus 83 ~kpFyLYTGRGpSS~smHlGHliPFiftKw--lQe~F~vpLVIqlTDDEKflwK~l~~eda~~~arENaKDIia~GFDp~ 160 (397)
T KOG2145|consen 83 GKPFYLYTGRGPSSESMHLGHLIPFIFTKW--LQDVFDVPLVIQLTDDEKFLWKDLTLEDAKKYARENAKDIIAVGFDPK 160 (397)
T ss_pred CCceEEEeCCCCCccccccccchhHHHHHH--HHHHhCCceEEEecccHHHHHhhCcHHHHHHHHHhcccceEEeccCCc
Confidence 357999999999965 9999999988 789 899665 6899999999997 44788999999999999999999999
Q ss_pred ccEEEEccCcch--hhHHHHHHhccCCHHHHhchhhHHHHHhhhC-CCCcccccchhhHHHhhhhhhc-----------c
Q 018259 151 KASVFVQSHVRA--HVELMWLLSSATPIGWLNKMIQFKEKSHKAG-GENVGVALLTYPVLMASDILLY-----------Q 216 (359)
Q Consensus 151 kt~i~~qS~~~~--~~eL~w~L~~~~~i~~L~r~~~~k~~~~~~~-~~~~~~g~l~YPvLQAADIl~~-----------~ 216 (359)
|+.||.+.++.. ++. -++-++.++.++++....+| +++.++|.+.+|..|||..+.. -
T Consensus 161 kTfIFsn~~y~g~~~fy--------~nivki~k~vt~nqa~~iFGF~~sd~igk~~Fpa~qaap~fssSFp~if~~~~~~ 232 (397)
T KOG2145|consen 161 KTFIFSNLDYMGGPAFY--------ENIVKISKCVTLNQAKAIFGFTDSDCIGKIGFPAIQAAPSFSSSFPFIFGGRDDI 232 (397)
T ss_pred ceEEEechhhccCcHHH--------HHHHHHhheechhhheeeeccCCccccccccCchhhhcccccccchhhcCCCcCC
Confidence 999999999763 222 13344556666665555555 4677999999999999999874 2
Q ss_pred cceeecccchHHHHHHHHHHHHHhhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCcCCCCCCCCCCeee
Q 018259 217 SDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRIN 296 (359)
Q Consensus 217 adivpvG~DQ~~hieLaRdia~k~n~~~g~~~~~~~~~~~~~~~~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~~s~I~ 296 (359)
.|++|+.+||+|+++++||+|+|++ +++|..+++ ..+|.|++.+.|||.|+| +++||
T Consensus 233 ~CLiPcAiDQDPyFRmtRDvA~rlg------------------~~Kpali~s---tffpaLqG~~~KMSASdp--ns~If 289 (397)
T KOG2145|consen 233 PCLIPCAIDQDPYFRMTRDVAPRLG------------------YPKPALIHS---TFFPALQGAQTKMSASDP--NSAIF 289 (397)
T ss_pred ceeceeeccCChHHHhhhhhhhhhC------------------CCCcceeeh---hhchhhhCcccccccCCC--CceEE
Confidence 6999999999999999999999987 567988887 679999888899999998 69999
Q ss_pred cCCCHHHHHHHhhh-ccCCCCCCcccC--CCCCCCcchHHHHHHHcCC--CCHHHHHHHhccC
Q 018259 297 LLDPKDVIANKIKR-CKTDSSAGLEFD--NLERPECNNLLSIYQLISG--KTKGEVAEECQNM 354 (359)
Q Consensus 297 L~D~p~~I~kKI~r-A~Td~~~~i~~~--~~~~p~v~nl~~i~~~~~~--~~~~~v~~~~~~~ 354 (359)
|+|++++|++||.+ |+++++.+++.+ .+++|+|++.++|+++|.+ ..+|++...|..+
T Consensus 290 ltdt~~qIk~KI~~~afSGGr~tiEeHRe~GGn~dVDV~~~YLsFFldDD~kLeq~r~~Y~~G 352 (397)
T KOG2145|consen 290 LTDTAKQIKNKINKYAFSGGRDTIEEHRELGGNPDVDVSFQYLSFFLDDDDKLEQIRKDYTSG 352 (397)
T ss_pred ecCcHHHHHHHHHHhhccCCcchHHHHHHhCCCCcceehHHHHHHHhccHHHHHHHHhhcccc
Confidence 99999999999998 999999999885 6799999999999999853 4689999998543
No 23
>KOG2144 consensus Tyrosyl-tRNA synthetase, cytoplasmic [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=4.9e-37 Score=291.64 Aligned_cols=212 Identities=24% Similarity=0.238 Sum_probs=166.5
Q ss_pred CCceEEEeeCCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEeccceecCCC--CHHHHHHHHH-HHHHHHHHc---CcCC
Q 018259 77 VKKRIVSGVQPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPY--DTQQLSKATR-ETAAIYLAC---GIDN 149 (359)
Q Consensus 77 ~~~~i~sGi~PTG~lHLGnyig~i~~~~~lQ~-~~~~~i~IADlhA~t~~~--~~~~l~~~~~-~~~~~~lA~---GlDp 149 (359)
+.+.||+|++|||+||+|.+++ |.+..+|.+ ||+|.|++|||||++++- .++.+..++. |....|-|+ +++.
T Consensus 33 r~l~~YwGtaptGrpHiay~vp-m~kiadflkAGC~VtIl~AD~hA~LdNmkap~e~~~~rv~yYe~~Ik~~l~~~nv~l 111 (360)
T KOG2144|consen 33 RALKCYWGTAPTGRPHIAYFVP-MMKIADFLKAGCEVTILFADLHAFLDNMKAPDELVIRRVGYYEKEIKAALGSINVPL 111 (360)
T ss_pred cCceeeecCCCCCCcceeeeee-hhHHHHHHhcCCeEEEEehHHHHHHhcccchHHHHHHHHHHHHHHHHHHHhhcCCcH
Confidence 5689999999999999999777 568888877 899999999999999843 4444444444 444444455 4556
Q ss_pred CccEEEEccCcc---hhhHHHHHHhccCCHHHHhchhhHHHHHhhhCCCCcccccchhhHHHhhhhhhcccceeecccch
Q 018259 150 SKASVFVQSHVR---AHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQ 226 (359)
Q Consensus 150 ~kt~i~~qS~~~---~~~eL~w~L~~~~~i~~L~r~~~~k~~~~~~~~~~~~~g~l~YPvLQAADIl~~~adivpvG~DQ 226 (359)
++..+...|++. .++-..+.++..++-..+++. +..-+.. .+...++.++||+|||+|++++.+|++++|.||
T Consensus 112 EkL~fv~gs~yq~sk~ytld~~rl~~~~~~hdak~a-gaevvkq---ve~plls~llYP~MQalDe~~L~vD~qfgGvDQ 187 (360)
T KOG2144|consen 112 EKLKFVKGSNYQLSKYYTLDMYRLSSNVTQHDAKKA-GAEVVKQ---VENPLLSGLLYPGMQALDEFYLEVDAQFGGVDQ 187 (360)
T ss_pred HHHhhhcccccccCccchhhHHHHHhhccHhHHHHh-hhhHHHh---hcchhhhhhhhhhHHHhhHHHHhhhHHhcCccH
Confidence 677777777763 334445566666654444433 4322222 267889999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCcCCCCCCCCCCeeecCCCHHHHHH
Q 018259 227 KQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIAN 306 (359)
Q Consensus 227 ~~hieLaRdia~k~n~~~g~~~~~~~~~~~~~~~~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~~s~I~L~D~p~~I~k 306 (359)
|..+.+||+++..+++ ++|..+++ +|+|||+.| +|||||+| .|.|+|.|+|++|.+
T Consensus 188 RKIf~~A~eylp~l~y------------------kKrihLmn---pMvPGL~q~-~KMSsSd~--~SkIdllD~~~~V~k 243 (360)
T KOG2144|consen 188 RKIFVLAEEYLPDLGY------------------KKRIHLMN---PMVPGLAQG-EKMSSSDP--LSKIDLLDEPADVNK 243 (360)
T ss_pred HHHHHHHHHhhhhhCc------------------ccceeecC---CCCcccccc-CccccCCc--ccccccccCHHHHHH
Confidence 9999999999999984 45777877 779999764 89999997 599999999999999
Q ss_pred HhhhccCCCCC
Q 018259 307 KIKRCKTDSSA 317 (359)
Q Consensus 307 KI~rA~Td~~~ 317 (359)
||++|||.+..
T Consensus 244 KI~kAfCePg~ 254 (360)
T KOG2144|consen 244 KIKKAFCEPGN 254 (360)
T ss_pred HHHHhcCCCCC
Confidence 99999999854
No 24
>COG0162 TyrS Tyrosyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.2e-33 Score=283.06 Aligned_cols=213 Identities=22% Similarity=0.234 Sum_probs=172.0
Q ss_pred CceEEEeeCCCC-cchhhhHHHHHHHHHHHhc-cCcEEEEEeccceecC-C-CCHHHHHHHHH----HHHH-HHHHcCcC
Q 018259 78 KKRIVSGVQPTG-SIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITL-P-YDTQQLSKATR----ETAA-IYLACGID 148 (359)
Q Consensus 78 ~~~i~sGi~PTG-~lHLGnyig~i~~~~~lQ~-~~~~~i~IADlhA~t~-~-~~~~~l~~~~~----~~~~-~~lA~GlD 148 (359)
+.++|+||+||| .+||||+++ +.++.+||+ ||+++++|||+||+++ | ++.++.+..++ ++++ ...++|.+
T Consensus 32 ~~~~Y~GfDPTa~slHlGhlv~-l~kL~~fQ~aGh~~ivLigd~ta~IgDpsGk~e~r~~l~~e~v~~n~~~i~~ql~~~ 110 (401)
T COG0162 32 PLRVYIGFDPTAPSLHLGHLVP-LMKLRRFQDAGHKPIVLIGDATAMIGDPSGKSEERKLLTRETVLENAETIKKQLGKF 110 (401)
T ss_pred CceEEEeeCCCCCccchhhHHH-HHHHHHHHHCCCeEEEEecccceecCCCCCCHHHHhhccHHHHHHHHHHHHHHhccc
Confidence 789999999999 699999998 569999999 8999999999999998 5 46666665553 3333 34466877
Q ss_pred CC-ccEEEEccCcchhhH---HHHHHhccCCHHHHhchhhHHHHHhhhCCCCcccccchhhHHHhhhhhhcccceeeccc
Q 018259 149 NS-KASVFVQSHVRAHVE---LMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGE 224 (359)
Q Consensus 149 p~-kt~i~~qS~~~~~~e---L~w~L~~~~~i~~L~r~~~~k~~~~~~~~~~~~~g~l~YPvLQAADIl~~~adivpvG~ 224 (359)
++ ++++..+|+|..... ..-.++.++|++++.+...|+.+. ..+.++++.+|+||+|||+|+++++.|++.+|.
T Consensus 111 ld~k~~~v~ns~w~~~~~y~~~l~~~g~~~sv~rml~~d~~~~R~--~~~~~is~~Ef~YpLmQayD~~~L~~dlq~GG~ 188 (401)
T COG0162 111 LDNKAEFVNNSDWLKKLNYLDFLRDVGKHFSVNRMLRRDDVKKRL--EREQGISFTEFNYPLLQAYDFVYLNKDLQLGGS 188 (401)
T ss_pred CCcceEEEechHHhCcCCHHHHHHHHHhHccHHHHHHhhhHHHHh--ccCCCCchhhhhhHHHHHHHHHHHccchhcCCh
Confidence 77 999999999975433 333467899999998888887443 332479999999999999999999999999999
Q ss_pred chHHHHHHHHHHHHHhhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCcCCCCCCC-------CCCeeec
Q 018259 225 DQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPS-------DQSRINL 297 (359)
Q Consensus 225 DQ~~hieLaRdia~k~n~~~g~~~~~~~~~~~~~~~~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~-------~~s~I~L 297 (359)
|||.++.++||+++|++. +.|.+++. +.|+++ ||. |||||..+ +.|.|.+
T Consensus 189 DQ~~ni~~grdl~rr~g~------------------~~~~~lt~---PLL~~l-dG~-KmgKs~~~a~~~~s~~~Sp~~~ 245 (401)
T COG0162 189 DQWGNILAGRDLIRRLGQ------------------KKVVGLTT---PLLTGL-DGK-KMGKSEGGAVWLDSEKTSPYDF 245 (401)
T ss_pred HHHHHHHHHHHHHHHhCC------------------CCeEEEEe---ccccCC-CCC-cccccCCCceEccCCCCCcHhh
Confidence 999999999999999873 34677777 559998 886 88888632 2357777
Q ss_pred CCCHHHHHHHhhhccCCCC
Q 018259 298 LDPKDVIANKIKRCKTDSS 316 (359)
Q Consensus 298 ~D~p~~I~kKI~rA~Td~~ 316 (359)
.|.+..|..|++.++|...
T Consensus 246 yq~~~~i~D~~~~~~~~~~ 264 (401)
T COG0162 246 YQYWMNIEDADVKRFLKLL 264 (401)
T ss_pred hhcHhcCcHHHHHHHHHHh
Confidence 7778888888888888765
No 25
>PTZ00348 tyrosyl-tRNA synthetase; Provisional
Probab=99.97 E-value=3.6e-31 Score=279.78 Aligned_cols=201 Identities=16% Similarity=0.197 Sum_probs=167.7
Q ss_pred cCcEEEEEeccceecCC---CCHHHHHHHHHHHHHHHHHcCcCCCccEEEEccCcchh-hHHHHH----HhccCCHHHHh
Q 018259 109 SYETLFFIVDLHAITLP---YDTQQLSKATRETAAIYLACGIDNSKASVFVQSHVRAH-VELMWL----LSSATPIGWLN 180 (359)
Q Consensus 109 ~~~~~i~IADlhA~t~~---~~~~~l~~~~~~~~~~~lA~GlDp~kt~i~~qS~~~~~-~eL~w~----L~~~~~i~~L~ 180 (359)
|++++|++|||||++++ ++.++|++.++++++.|.|+|+|++ ++|+|+|++... ...||. ++..++++|++
T Consensus 407 g~~~~illADwhA~lN~k~~G~l~~I~~~~~y~~~~~~a~G~~~~-v~fv~~sd~~~~~~~~Yw~~v~~ia~~~tl~r~~ 485 (682)
T PTZ00348 407 DGTVTLVLPDWSAVASDEITGEEKDISAALEVNCALLKAYGLPSE-VKIVRENEVILGNPNDFWVSVIGIARKNLLSHVE 485 (682)
T ss_pred CCeEEEEeehhHHHhcCccCCCHHHHHHHHHHHHHHHHHcCCCCC-cEEEEchHhhhcCchhHHHHHHHHHHhccHHHHH
Confidence 89999999999999983 7999999999999999999999999 999999997544 557887 57789999999
Q ss_pred chhhHHHHHhhhCCCCcccccchhhHHHhhhhhhcccceeecccchHHHHHHHHHHHHHhhhhhCCccccccCCCCCccc
Q 018259 181 KMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIF 260 (359)
Q Consensus 181 r~~~~k~~~~~~~~~~~~~g~l~YPvLQAADIl~~~adivpvG~DQ~~hieLaRdia~k~n~~~g~~~~~~~~~~~~~~~ 260 (359)
|+.+ ++..++|.++||+||++||+++++|++.+|+|||..++||||++++.++
T Consensus 486 r~~g---------~~~~~~s~~iYP~MQ~~Di~~L~~di~~gG~DQRki~mlAre~~~~~~~------------------ 538 (682)
T PTZ00348 486 ELYG---------GELRNAGQVIAALMRVATALMLSASHVISTSLDGGINEFAREYTKGRIE------------------ 538 (682)
T ss_pred HHhc---------CCcccHHHHHHHHHHHHHHHhcCCCeeecChhHHHHHHHHHHhcccccc------------------
Confidence 9762 2556999999999999999999999999999999999999999996431
Q ss_pred cCCceecCCCCcccccCCCCCCcCCCCCCCCCCeeecCCCHHHHHHHhhhccCCCCCCcccCCCCCCCcchHHHHHHHc-
Q 018259 261 KVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRCKTDSSAGLEFDNLERPECNNLLSIYQLI- 339 (359)
Q Consensus 261 ~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~~s~I~L~D~p~~I~kKI~rA~Td~~~~i~~~~~~~p~v~nl~~i~~~~- 339 (359)
|..++. .++|+|..|..+|++|++ +++|+|.|++++|++||++|||.+. ++ ++| +++|..++
T Consensus 539 --~~~~~~---~~~p~l~~~~~~~~~~s~--~s~i~~~D~~~~i~~Ki~kA~Cpp~--~~----~Np----vl~~~~y~~ 601 (682)
T PTZ00348 539 --CIQALE---GRVPALHRPGAAPAVLGA--DDVLYLDDNDMDIRRKIKKAYSAPN--EE----ANP----VISVAQHLL 601 (682)
T ss_pred --chhhcC---CCCccccccccccCCCCC--CCeeeecCCHHHHHHHHHhCCCCCC--CC----CCc----HHHHHHHHh
Confidence 333444 678999888889999975 7999999999999999999999972 22 244 66666654
Q ss_pred C--------------C----CCHHHHHHHhccC
Q 018259 340 S--------------G----KTKGEVAEECQNM 354 (359)
Q Consensus 340 ~--------------~----~~~~~v~~~~~~~ 354 (359)
- | .++|++.+.|..+
T Consensus 602 ~~~~~~~i~R~e~~Gg~~~y~s~eeL~~dy~~g 634 (682)
T PTZ00348 602 AQQGALSIERGEANGGNVAYNTPEALVADCGSG 634 (682)
T ss_pred cCCCeEEEecccccCCCeeeCCHHHHHHHHHcC
Confidence 0 1 2577888888654
No 26
>KOG2623 consensus Tyrosyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.75 E-value=1.1e-17 Score=165.24 Aligned_cols=234 Identities=19% Similarity=0.245 Sum_probs=165.0
Q ss_pred CceEEEeeCCCCc-chhhhHHHHHHHHHHHhc-cCcEEEEEeccceecC-CC---------CHHHHHHHHHHHHHHHH--
Q 018259 78 KKRIVSGVQPTGS-IHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITL-PY---------DTQQLSKATRETAAIYL-- 143 (359)
Q Consensus 78 ~~~i~sGi~PTG~-lHLGnyig~i~~~~~lQ~-~~~~~i~IADlhA~t~-~~---------~~~~l~~~~~~~~~~~l-- 143 (359)
+.+||.||+||.. +|+||.++. ..++.+|. |++++-+|++.+|.++ |. +.+.++.|++.+...+.
T Consensus 63 p~~vYcGfDPTA~SLHvGNLl~l-m~L~hfqr~Gh~~ialIGgATa~vGDPSGrktER~~l~~d~~~~N~~~I~~ql~~i 141 (467)
T KOG2623|consen 63 PQYVYCGFDPTAESLHVGNLLAL-MVLIHFQRAGHRPIALIGGATASVGDPSGRKTERGQLAEDTREANSRSITQQLCKI 141 (467)
T ss_pred CceEEecCCCcHHhhhhcchHHH-HHHHHHHHcCCCceEEeccccccccCCCCCccchhhhhhHHHHHhHHHHHHHHHHH
Confidence 5789999999987 999999885 58888887 8999999999999997 31 12334444433333222
Q ss_pred --------HcCcCCCccEEEEccCcchhhHHHHHH---hccCCHHHHhchhhHHHHHhhhCCCCcccccchhhHHHhhhh
Q 018259 144 --------ACGIDNSKASVFVQSHVRAHVELMWLL---SSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDI 212 (359)
Q Consensus 144 --------A~GlDp~kt~i~~qS~~~~~~eL~w~L---~~~~~i~~L~r~~~~k~~~~~~~~~~~~~g~l~YPvLQAADI 212 (359)
.+|....+-.|+.+++|.+...|-=+| +.++.++.|.++-..+.+.. .+++.++.+|+|-+|||+|.
T Consensus 142 f~n~~~~~~~~~s~g~~~ivnN~dW~~d~~llDFLa~vGrh~RvgsMLar~SV~~RLe--s~~GlSftEFtYQ~lQAYDf 219 (467)
T KOG2623|consen 142 FENHPEYYRDGSSQGKYIIVNNSDWYKDIKLLDFLAEVGRHFRVGSMLARDSVKSRLE--SPNGLSFTEFTYQLLQAYDF 219 (467)
T ss_pred HhcChhhhcCCcccCceeEeechHHhhhchHHHHHHHhchhhhHHHHHHHHHHHHhhc--CCCCCcHHHHHHHHHHHHhH
Confidence 234444667899999998765554444 35677887777766664433 34689999999999999999
Q ss_pred hh----cccceeecccchHHHHHHHHHHHHHhhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCcCCCCC
Q 018259 213 LL----YQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSA 288 (359)
Q Consensus 213 l~----~~adivpvG~DQ~~hieLaRdia~k~n~~~g~~~~~~~~~~~~~~~~~P~~l~~~~~~~l~sL~dg~~KMSKS~ 288 (359)
++ |+..++.+|.||+.||+..-|+.+|+-..-+ .+|.+..++ |.+- +| .|..||.
T Consensus 220 y~L~~~~g~~~QlGGsDQwGNitaG~dlI~ki~~~~~------------~vfGlT~PL-------lTss-tG-~KlGKSa 278 (467)
T KOG2623|consen 220 YHLYENYGCRFQLGGSDQWGNITAGTDLIRKIMPIQA------------FVFGLTFPL-------LTSS-TG-AKLGKSA 278 (467)
T ss_pred HHHHHhcCeeEEecccccccccchHHHHHHHhccccc------------ceeeeeeee-------EecC-cc-hhhccCC
Confidence 98 4899999999999999999999999863200 112222223 3343 66 6999997
Q ss_pred CCCCCeeecCC---CHHHHHHHhhhccCCCCCCcccCCCCCCCcchHHHHHHHcCCCCHHHHHHHh
Q 018259 289 PSDQSRINLLD---PKDVIANKIKRCKTDSSAGLEFDNLERPECNNLLSIYQLISGKTKGEVAEEC 351 (359)
Q Consensus 289 p~~~s~I~L~D---~p~~I~kKI~rA~Td~~~~i~~~~~~~p~v~nl~~i~~~~~~~~~~~v~~~~ 351 (359)
+|+|+|.- +|..+++-.-++.-|. |.-++.+|.++.-.+++.|.++.
T Consensus 279 ---GnAvWLdp~~tspy~lYQfF~~~pDd~-------------v~k~LklfTfl~l~eI~~I~~~H 328 (467)
T KOG2623|consen 279 ---GNAVWLDPSKTSPYHLYQFFASLPDDD-------------VEKFLKLFTFLPLEEIKQILEEH 328 (467)
T ss_pred ---CceEEecCccCCcHHHHHHHHhCchhH-------------HHHHHHHHhcCCHHHHHHHHHHH
Confidence 68999974 7888888877764221 22455566555445566555554
No 27
>cd00808 GluRS_core catalytic core domain of discriminating glutamyl-tRNA synthetase. Discriminating Glutamyl-tRNA synthetase (GluRS) catalytic core domain . The discriminating form of GluRS is only found in bacteria and cellular organelles. GluRS is a monomer that attaches Glu to the appropriate tRNA. Like other class I tRNA synthetases, GluRS aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=99.63 E-value=1.6e-15 Score=143.62 Aligned_cols=172 Identities=20% Similarity=0.180 Sum_probs=124.4
Q ss_pred eCCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEeccceecCCCCHHHHHHHHHHHHHHHHHcCcCCCccE-------EEE
Q 018259 85 VQPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKAS-------VFV 156 (359)
Q Consensus 85 i~PTG~lHLGnyig~i~~~~~lQ~-~~~~~i~IADlhA~t~~~~~~~l~~~~~~~~~~~lA~GlDp~kt~-------i~~ 156 (359)
=.|||.+||||+.+++.+|...+. +...++-|.| |++ .....+....+.+++.++||++++.. +|.
T Consensus 8 PsPtG~LHlG~~~~al~n~l~ar~~~G~~ilRieD----td~--~r~~~~~~~~i~~dL~wlGl~~d~~~~~~g~~~~~~ 81 (239)
T cd00808 8 PSPTGFLHIGGARTALFNYLFARKHGGKFILRIED----TDQ--ERSVPEAEEAILEALKWLGLDWDEGPDVGGPYGPYR 81 (239)
T ss_pred CCCCCcccHHHHHHHHHHHHHHHHcCCeEEEEECc----CCC--CCCchHHHHHHHHHHHHcCCCCCcCCccCCCCCCEe
Confidence 368899999999999999998887 4455566998 332 12345667778888899999999843 899
Q ss_pred ccCcchhhHHHHHHhccCCHHHHhchhhHHHHHhhhCCCCcccccchhhHHHhhhhhhcccceeecccchHHHHHHHHHH
Q 018259 157 QSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTREL 236 (359)
Q Consensus 157 qS~~~~~~eL~w~L~~~~~i~~L~r~~~~k~~~~~~~~~~~~~g~l~YPvLQAADIl~~~adivpvG~DQ~~hieLaRdi 236 (359)
||+-.+. |.-. +.+| ...+ =|..+|++.++.|...+++++|+.|.|+..|...-+.+
T Consensus 82 QS~r~~~---y~~~-----~~~L----------~~~g-----dg~ptY~~a~~vDD~~~~ithViRG~D~~~~t~~q~~l 138 (239)
T cd00808 82 QSERLEI---YRKY-----AEKL----------LEKG-----DGFPTYHLANVVDDHLMGITHVIRGEEHLSSTPKQILL 138 (239)
T ss_pred eeCCHHH---HHHH-----HHHH----------HHcC-----CCCcccccHHHHhHHhcCCCEEEEChhhhhChHHHHHH
Confidence 9974322 1111 0111 1111 27889999999999999999999999999999999999
Q ss_pred HHHhhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCcCCCCCCCCCCeeecC----CCHHHHHHHhhh
Q 018259 237 AERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLL----DPKDVIANKIKR 310 (359)
Q Consensus 237 a~k~n~~~g~~~~~~~~~~~~~~~~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~~s~I~L~----D~p~~I~kKI~r 310 (359)
.+.|| ++.|...+. +.+++. +| .||||+... .+|.-. -+|+.|..-+..
T Consensus 139 ~~aLg------------------~~~p~~~h~---pll~~~-~g-~KLSKR~~~--~~l~~lr~~G~~p~ai~~~l~~ 191 (239)
T cd00808 139 YEALG------------------WEPPKFAHL---PLILNP-DG-KKLSKRKGD--TSISDYREEGYLPEALLNYLAL 191 (239)
T ss_pred HHHcC------------------CCCCceEee---ccccCC-CC-CcccCCCCC--ccHHHHHHCCCCHHHHHHHHHH
Confidence 99997 345655444 456676 56 699999742 223221 368888887775
No 28
>cd00802 class_I_aaRS_core catalytic core domain of class I amino acyl-tRNA synthetase. Class I amino acyl-tRNA synthetase (aaRS) catalytic core domain. These enzymes are mostly monomers which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=99.48 E-value=3.9e-13 Score=116.62 Aligned_cols=63 Identities=43% Similarity=0.469 Sum_probs=53.5
Q ss_pred hhHHHhhhhhhccc---ceeecccchHHHHHHHHHHHHHhhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCC
Q 018259 204 YPVLMASDILLYQS---DFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDG 280 (359)
Q Consensus 204 YPvLQAADIl~~~a---divpvG~DQ~~hieLaRdia~k~n~~~g~~~~~~~~~~~~~~~~~P~~l~~~~~~~l~sL~dg 280 (359)
||+.|+||++.+.. |++++|.||++|+++.++++++++. ...|..+.. ++|.+. +|
T Consensus 78 y~~~~~a~~~~~~~~~~~i~~~G~Dq~~h~~~~~~i~~~~~~-----------------~~~p~~~~~---~~l~~~-~g 136 (143)
T cd00802 78 YMFLQAADFLLLYETECDIHLGGSDQLGHIELGLELLKKAGG-----------------PARPFGLTF---GRVMGA-DG 136 (143)
T ss_pred HHHHHHHHHHHHhhCCcEEEEechhHHHHHHHHHHHHHHhCC-----------------CCCceEEEe---CCeECC-CC
Confidence 99999999999999 9999999999999999999999872 124777766 567775 55
Q ss_pred CCcCCCCC
Q 018259 281 LSKMSKSA 288 (359)
Q Consensus 281 ~~KMSKS~ 288 (359)
+|||||.
T Consensus 137 -~KmSks~ 143 (143)
T cd00802 137 -TKMSKSK 143 (143)
T ss_pred -CcCCCCC
Confidence 6999994
No 29
>cd00418 GlxRS_core catalytic core domain of glutamyl-tRNA and glutaminyl-tRNA synthetase. Glutamyl-tRNA synthetase(GluRS)/Glutaminyl-tRNA synthetase (GlnRS) cataytic core domain. These enzymes attach Glu or Gln, respectively, to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea, cellular organelles, and some bacteria lack GlnRS. In these cases, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme. The discriminating form of GluRS differs from GlnRS and the non-discriminating form of GluRS in their C-terminal anti-codon bind
Probab=99.09 E-value=6.8e-10 Score=104.86 Aligned_cols=169 Identities=20% Similarity=0.217 Sum_probs=118.7
Q ss_pred CCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEeccceecCCCCHHHHHHHHHHHHHHHHHcCcCCCccEEEEccCcchhh
Q 018259 86 QPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQSHVRAHV 164 (359)
Q Consensus 86 ~PTG~lHLGnyig~i~~~~~lQ~-~~~~~i~IADlhA~t~~~~~~~l~~~~~~~~~~~lA~GlDp~kt~i~~qS~~~~~~ 164 (359)
.|||.+||||...++.+|...+. +.+.++-|-|.-. .....+....+..++..+||++++- ++.||+..+.
T Consensus 9 sPtG~lHlG~~r~al~n~l~Ar~~~G~~iLRieDtD~------~R~~~~~~~~I~~dL~wlGl~wd~~-~~~QS~r~~~- 80 (230)
T cd00418 9 SPTGYLHIGHARTALFNFAFARKYGGKFILRIEDTDP------ERSRPEYVESILEDLKWLGLDWDEG-PYRQSDRFDL- 80 (230)
T ss_pred CCCCcccHHHHHHHHHHHHHHHHcCCeEEEEeCcCCC------CCCChHHHHHHHHHHHHcCCCCCCC-eeehhcCHHH-
Confidence 68899999999999999977655 6667777877632 1234466778888899999999953 8899986432
Q ss_pred HHHHHHhccCCHHHHhchhhHHHHHhhhCCCCcccccchhhHHHhhhhhhcccceeecccchHHHHHHHHHHHHHhhhhh
Q 018259 165 ELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLY 244 (359)
Q Consensus 165 eL~w~L~~~~~i~~L~r~~~~k~~~~~~~~~~~~~g~l~YPvLQAADIl~~~adivpvG~DQ~~hieLaRdia~k~n~~~ 244 (359)
|.- +-++....| |..+|=.--+.|=...+.++|.-|.|+..+-..-+.+.+.+|
T Consensus 81 --y~~---------------~~~~L~~~g------g~p~Y~la~vvDD~~~gIThViRG~D~l~st~~q~~l~~~Lg--- 134 (230)
T cd00418 81 --YRA---------------YAEELIKKG------GYPLYNFVHPVDDALMGITHVLRGEDHLDNTPIQDWLYEALG--- 134 (230)
T ss_pred --HHH---------------HHHHHHHcC------CCccccccccccccccCCCEEEECHhhhhchHHHHHHHHHcC---
Confidence 211 001111111 555565555666677899999999999999999999999987
Q ss_pred CCccccccCCCCCccccCCceecCCCCcccccCCCCCCcCCCCCCCCCCeeecC----CCHHHHHHHhhh
Q 018259 245 GGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLL----DPKDVIANKIKR 310 (359)
Q Consensus 245 g~~~~~~~~~~~~~~~~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~~s~I~L~----D~p~~I~kKI~r 310 (359)
++.|...+. ++|.+. +| +||||+... .+|.-. -.|+.|..-+..
T Consensus 135 ---------------~~~P~~~H~---pll~~~-~g-~KLSKr~~~--~~i~~~r~~G~~p~ai~~~l~~ 182 (230)
T cd00418 135 ---------------WEPPRFYHF---PRLLLE-DG-TKLSKRKLN--TTLRALRRRGYLPEALRNYLAL 182 (230)
T ss_pred ---------------CCCCeEEEe---eeeeCC-CC-CCccCcCCC--cCHHHHHHCCCcHHHHHHHHHH
Confidence 456877766 557665 55 699999742 333222 367888877764
No 30
>cd00674 LysRS_core_class_I catalytic core domain of class I lysyl tRNA synthetase. Class I lysyl tRNA synthetase (LysRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. The class I LysRS is found only in archaea and some bacteria and has evolved separately from class II LysRS, as the two do not share structural or sequence similarity.
Probab=98.74 E-value=3e-07 Score=91.98 Aligned_cols=204 Identities=22% Similarity=0.263 Sum_probs=116.5
Q ss_pred CceEEEeeCCCCcchhhhHHHHHH--HHHHHhc--cCcE-EEEEeccceec---------------C-C---------CC
Q 018259 78 KKRIVSGVQPTGSIHLGNYLGAIK--NWIALQN--SYET-LFFIVDLHAIT---------------L-P---------YD 127 (359)
Q Consensus 78 ~~~i~sGi~PTG~lHLGnyig~i~--~~~~lQ~--~~~~-~i~IADlhA~t---------------~-~---------~~ 127 (359)
+..|-||+-|||.+||||+...+. -+.+.++ |+++ +++..|.|.-+ + | ..
T Consensus 20 ~~~v~tgi~psG~~HIG~~~e~i~~D~i~R~lr~~G~~v~~v~~~Dd~d~lrKvp~~l~~~~~~~~G~pi~~ip~p~g~~ 99 (353)
T cd00674 20 KYVVASGISPSGHIHIGNFREVITADLVARALRDLGFEVRLIYSWDDYDRLRKVPPNVPESYEQYIGMPLSSVPDPFGCC 99 (353)
T ss_pred eEEEecCCCCCCCcccCccHHHHHHHHHHHHHHHcCCCEEEEEEEcCCCcccccccchhhHHHHhcCccchhchhhcCCC
Confidence 467888999999999999886553 2445544 7887 57899999211 1 1 02
Q ss_pred HHHHHHHHHHHHHHHHHcCcCCCccEEEEccCcchhhHHHH----HHhccCCHHHHhchhhHHHHHhh------------
Q 018259 128 TQQLSKATRETAAIYLACGIDNSKASVFVQSHVRAHVELMW----LLSSATPIGWLNKMIQFKEKSHK------------ 191 (359)
Q Consensus 128 ~~~l~~~~~~~~~~~lA~GlDp~kt~i~~qS~~~~~~eL~w----~L~~~~~i~~L~r~~~~k~~~~~------------ 191 (359)
++-...+...+.+.+..+||+.+ +|.+++.+.+.++.= .|-..--|.++-.- +....+.
T Consensus 100 ~~~~d~~~~~f~~~l~~lgi~~d---~~~~T~~y~~g~~~~~i~~~L~~~~~I~~i~~~--~~~~~~~~~~~P~~p~c~~ 174 (353)
T cd00674 100 ESYAEHFERPFEESLEKLGIEVE---FISQSQMYKSGLYDENILIALEKRDEIMAILNE--YRGRELQETWYPFMPYCEK 174 (353)
T ss_pred HHHHHHHHHHHHHHHHHcCCeee---eeecCCchhhchHHHHHHHHHHHCChHHHHHHH--hcCCccCCCceeeeeecCC
Confidence 23455566677778888999865 888888765432111 12221112111000 0000000
Q ss_pred hCCC-------CcccccchhhH---------------------HHhhhhhhcccceeecccchHHH---HHHHHHHHH-H
Q 018259 192 AGGE-------NVGVALLTYPV---------------------LMASDILLYQSDFVPVGEDQKQH---LELTRELAE-R 239 (359)
Q Consensus 192 ~~~~-------~~~~g~l~YPv---------------------LQAADIl~~~adivpvG~DQ~~h---ieLaRdia~-k 239 (359)
.|.. +..-+.+.|=+ ==++.=..++.|+.|+|.||..| +...+++++ .
T Consensus 175 cg~~~~~v~~~d~~~~~v~y~c~cG~~g~~~~~~g~~KL~Wr~dW~~rW~~l~Vd~E~~GkDh~~~ggs~~~~~~i~~~i 254 (353)
T cd00674 175 CGKDTTTVEAYDAKAGTVTYKCECGHEETVDIRTGRGKLTWRVDWPMRWAILGVDFEPFGKDHASAGGSYDTGKEIAREI 254 (353)
T ss_pred cCcceeEEEEEeCCCCeEEEEcCCCCEEEEeecCCCcccCCCCCchhhhhhcCCCEEeeCccccccccHHHHHHHHHHHH
Confidence 0000 00012233311 00111122469999999999999 999999999 7
Q ss_pred hhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCcCCCCCCCCCCeeecCC-----CHHHHHHHhhhcc
Q 018259 240 VNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLD-----PKDVIANKIKRCK 312 (359)
Q Consensus 240 ~n~~~g~~~~~~~~~~~~~~~~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~~s~I~L~D-----~p~~I~kKI~rA~ 312 (359)
++. +.|..+... ++ .+ ++..|||||. ++.|.+.| +|+.++--+.+..
T Consensus 255 lg~------------------~~P~~~~ye---~V-~l-~gg~KMSKSk---GnvI~~~dll~~~~~dalR~~~l~~~ 306 (353)
T cd00674 255 FGG------------------EPPVPVMYE---FI-GL-KGGGKMSSSK---GNVITPSDWLEVAPPEVLRYLYARRK 306 (353)
T ss_pred hCC------------------CCCeEEEee---eE-Ee-CCCCccCCCC---CCcCCHHHHHHHhChHHHHHHHHhCC
Confidence 662 236554442 23 34 3436999996 78888876 5666655555543
No 31
>PRK05710 glutamyl-Q tRNA(Asp) synthetase; Reviewed
Probab=98.62 E-value=1.5e-07 Score=92.28 Aligned_cols=173 Identities=17% Similarity=0.183 Sum_probs=110.0
Q ss_pred CCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEeccceecCCCCHHHHHHHHHHHHHHHHHcCcCCCccEEEEccCcchhh
Q 018259 86 QPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQSHVRAHV 164 (359)
Q Consensus 86 ~PTG~lHLGnyig~i~~~~~lQ~-~~~~~i~IADlhA~t~~~~~~~l~~~~~~~~~~~lA~GlDp~kt~i~~qS~~~~~~ 164 (359)
.|||.+||||+..++.+|...+. +.+.++-|-|.-. .....+....+.+++.++||+++.. ++.||+..+.-
T Consensus 13 SPTG~LHlG~~rtAL~n~l~Ar~~~G~~iLRiEDtD~------~R~~~~~~~~I~~dL~wlGl~wDe~-~~~QS~r~~~Y 85 (299)
T PRK05710 13 SPSGPLHFGSLVAALGSWLDARAHGGRWLLRIEDIDP------PREVPGAADAILADLEWLGLHWDGP-VLYQSQRHDAY 85 (299)
T ss_pred CCCCcccHHHHHHHHHHHHHHHHcCCEEEEEECcCCC------CccchHHHHHHHHHHHHCCCCCCCC-ceEeeccHHHH
Confidence 67899999999999999987766 6678888888622 2234566778889999999999963 78899864321
Q ss_pred --------HHHHHHhccCCHHHHhchhh--------HHHHHhhhCC-CC--------c---------------------c
Q 018259 165 --------ELMWLLSSATPIGWLNKMIQ--------FKEKSHKAGG-EN--------V---------------------G 198 (359)
Q Consensus 165 --------eL~w~L~~~~~i~~L~r~~~--------~k~~~~~~~~-~~--------~---------------------~ 198 (359)
+.-+.+.|.+|-.+|++..+ |.-.-+.... +. + .
T Consensus 86 ~~~~~~L~~~G~aY~C~Ctr~el~~~~~~~~~~~~~y~g~cr~~~~~~~~~~~iRlk~~~~~~~~~D~~~G~~~~~~~~~ 165 (299)
T PRK05710 86 RAALDRLRAQGLVYPCFCSRKEIAAAAPAPPDGGGIYPGTCRDLLHGPRNPPAWRLRVPDAVIAFDDRLQGRQHQDLALA 165 (299)
T ss_pred HHHHHHHHHCCCceecCCCHHHHHHHhhhccCCCCcCCCccccCCccccCCceEEEEcCCCceEEEEecceeEeeCCCCC
Confidence 11123568899888865431 1000000000 00 0 0
Q ss_pred cccc------hhhHHHhhhh---hhcccceeecccchHHHHHHHHHHHHHhhhhhCCccccccCCCCCccccCCceecCC
Q 018259 199 VALL------TYPVLMASDI---LLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPP 269 (359)
Q Consensus 199 ~g~l------~YPvLQAADI---l~~~adivpvG~DQ~~hieLaRdia~k~n~~~g~~~~~~~~~~~~~~~~~P~~l~~~ 269 (359)
++.+ .||..+=|-+ ...+.++|.=|.|....-..=..|.+-|+ ++.|+..+.
T Consensus 166 ~~D~Vi~R~dg~ptY~lA~vVDD~~~gIThVvRG~D~l~~t~~Q~~l~~aLg------------------~~~P~y~H~- 226 (299)
T PRK05710 166 VGDFVLRRADGLFAYQLAVVVDDALQGVTHVVRGADLLDSTPRQIYLQQLLG------------------LPTPRYLHL- 226 (299)
T ss_pred CCCEEEEecCCCccccchhHHhcccCCCCEEEeChhhhhcCHHHHHHHHHcC------------------CCCCeEEEe-
Confidence 1111 1222222222 23468899999998777777677777765 456877776
Q ss_pred CCcccccCCCCCCcCCCCC
Q 018259 270 AGARVMSLTDGLSKMSKSA 288 (359)
Q Consensus 270 ~~~~l~sL~dg~~KMSKS~ 288 (359)
+.|.+. +| +||||++
T Consensus 227 --pll~~~-~g-~kLSKr~ 241 (299)
T PRK05710 227 --PLVLNA-DG-QKLSKQN 241 (299)
T ss_pred --ecccCC-CC-CcccccC
Confidence 447776 66 7999996
No 32
>PRK00750 lysK lysyl-tRNA synthetase; Reviewed
Probab=98.58 E-value=3.3e-07 Score=95.76 Aligned_cols=65 Identities=26% Similarity=0.479 Sum_probs=48.9
Q ss_pred cccceeecccchHH-HHHHHHHHHH-HhhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCcCCCCCCCCC
Q 018259 215 YQSDFVPVGEDQKQ-HLELTRELAE-RVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQ 292 (359)
Q Consensus 215 ~~adivpvG~DQ~~-hieLaRdia~-k~n~~~g~~~~~~~~~~~~~~~~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~~ 292 (359)
++.|+.|.|.||.. +..++++|++ .++ ++.|..+.. ..+..- +| +|||||. +
T Consensus 233 l~Vd~e~~GkDh~~~s~~~~~~i~~~ilg------------------~~~P~~~~y---~~v~~~-~G-~KMSKSk---G 286 (510)
T PRK00750 233 LGVDFEPFGKDHASASYDTSKKIAREILG------------------GEPPEPFVY---ELFLDK-KG-EKISKSK---G 286 (510)
T ss_pred cCCCEEeeCcccCcchHHHHHHHHHHHcC------------------CCCCeeeee---eeEEeC-CC-CcccccC---C
Confidence 36999999999999 9999999999 665 234666554 335432 35 7999997 7
Q ss_pred CeeecCC-----CHHHHH
Q 018259 293 SRINLLD-----PKDVIA 305 (359)
Q Consensus 293 s~I~L~D-----~p~~I~ 305 (359)
|.|.+.| +|+.++
T Consensus 287 N~i~~~d~l~~~~pd~lR 304 (510)
T PRK00750 287 NVITIEDWLEYAPPESLR 304 (510)
T ss_pred CccCHHHHHHHCCHHHHH
Confidence 8888876 566665
No 33
>PRK01406 gltX glutamyl-tRNA synthetase; Reviewed
Probab=98.49 E-value=1.2e-06 Score=90.90 Aligned_cols=192 Identities=20% Similarity=0.182 Sum_probs=122.5
Q ss_pred CCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEeccceecCCCCHHHHHHHHHHHHHHHHHcCcCCCcc------EEEEcc
Q 018259 86 QPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKA------SVFVQS 158 (359)
Q Consensus 86 ~PTG~lHLGnyig~i~~~~~lQ~-~~~~~i~IADlhA~t~~~~~~~l~~~~~~~~~~~lA~GlDp~kt------~i~~qS 158 (359)
.|||.+||||...++.+|..... +.+.++-|-|.-. .....+....+..++..+||+++.. -.|.||
T Consensus 12 SPtG~lHiG~~rtal~n~l~Ar~~~G~fiLRieDtD~------~R~~~~~~~~i~~~L~wlGl~~De~p~~~~~gpy~QS 85 (476)
T PRK01406 12 SPTGYLHIGGARTALFNWLFARHHGGKFILRIEDTDQ------ERSTEEAEEAILEGLKWLGLDWDEGPDGGPYGPYRQS 85 (476)
T ss_pred CCCCcccHHHHHHHHHHHHHHHHcCCEEEEEeCcCCC------CCCChHHHHHHHHHHHHCCCCCCCCCccCCCCceehh
Confidence 57899999999999999976655 5666777777622 1224455677888888999999964 159999
Q ss_pred Ccchh-hHHHH-------HHhccCCHHHHhchhh--HH-----------------HHHhh--hCC----------C----
Q 018259 159 HVRAH-VELMW-------LLSSATPIGWLNKMIQ--FK-----------------EKSHK--AGG----------E---- 195 (359)
Q Consensus 159 ~~~~~-~eL~w-------~L~~~~~i~~L~r~~~--~k-----------------~~~~~--~~~----------~---- 195 (359)
+..+. .+..- .+-|.++-.+|+.... .+ +..+. .|. +
T Consensus 86 ~r~~~y~~~~~~L~~~g~aY~C~cs~eel~~~r~~~~~~~~~~~y~~~cr~~~~~~~~~~~~~g~~~~iR~k~p~~~~~~ 165 (476)
T PRK01406 86 ERLDIYKEYAEQLLEEGKAYYCYCTPEELEAMREEQRAAGEPPRYDGRCRDLTKEEVAARLAAGEPPVIRFKVPDEGEVV 165 (476)
T ss_pred cCHHHHHHHHHHHHHcCCeeecCCCHHHHHHHHHHHHhCCCCCCCCccccCCCHHHHHHHHhCCCCeeEEEEcCCCCceE
Confidence 85432 22111 1457888777754311 00 00000 000 0
Q ss_pred ------------Ccccccch------hhHHHhhhhhh---cccceeecccchHHHHHHHHHHHHHhhhhhCCccccccCC
Q 018259 196 ------------NVGVALLT------YPVLMASDILL---YQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGG 254 (359)
Q Consensus 196 ------------~~~~g~l~------YPvLQAADIl~---~~adivpvG~DQ~~hieLaRdia~k~n~~~g~~~~~~~~~ 254 (359)
...++.++ +|..+.||++- .+.|+|..|.||..|.-.-..+.+.++
T Consensus 166 ~~D~i~G~~~~~~~~~~D~Vl~RsDG~ptY~~a~vVdD~~~~ithvIrG~d~~~~t~~q~~l~~alG------------- 232 (476)
T PRK01406 166 FDDLVRGEIEFPNSELDDFVILRSDGTPTYNFAVVVDDHLMGITHVIRGEDHLSNTPKQILLYEALG------------- 232 (476)
T ss_pred EEEeccceEEeccccCCCcEEEecCCCccccchHHHHHHHcCCCEEEECchhhcCHHHHHHHHHHhC-------------
Confidence 00011111 67777777754 578999999999999999999999887
Q ss_pred CCCccccCCceecCCCCcccccCCCCCCcCCCCCCCCCCeeecCC------CHHHHHHHhhh
Q 018259 255 RGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLD------PKDVIANKIKR 310 (359)
Q Consensus 255 ~~~~~~~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~~s~I~L~D------~p~~I~kKI~r 310 (359)
+..|...+. +.+.++ +| +||||.+ +.+.+.| .|+.|.+-+.+
T Consensus 233 -----~~~p~~~H~---pli~~~-~g-~klSKR~----g~~~l~~l~~~G~~p~Ai~n~l~~ 280 (476)
T PRK01406 233 -----WEVPVFAHL---PLILGP-DG-KKLSKRH----GATSVEQYRDMGYLPEALLNYLAL 280 (476)
T ss_pred -----CCCCeEEEe---eeeeCC-CC-CcccCcC----CccCHHHHHHCCCCHHHHHHHHHH
Confidence 234766665 346676 56 6999996 3555543 56666665544
No 34
>PRK14895 gltX glutamyl-tRNA synthetase; Provisional
Probab=98.46 E-value=1.2e-06 Score=91.44 Aligned_cols=197 Identities=16% Similarity=0.176 Sum_probs=122.8
Q ss_pred eEEEeeCCC--CcchhhhHHHHHHHHHHHhc-cCcEEEEEeccceecCCCCHHHHHHHHHHHHHHHHHcCcCCCccEEEE
Q 018259 80 RIVSGVQPT--GSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFV 156 (359)
Q Consensus 80 ~i~sGi~PT--G~lHLGnyig~i~~~~~lQ~-~~~~~i~IADlhA~t~~~~~~~l~~~~~~~~~~~lA~GlDp~kt~i~~ 156 (359)
.|.+.|.|| |.+||||...++.+|...+. +.+.++-|-|.-. .....+....+..++..+|||++. ..|.
T Consensus 4 ~vrtRFAPSPTG~lHiG~artAL~n~l~Ar~~gG~fiLRIEDTD~------~R~~~~~~~~i~~~L~WLGl~wDe-~py~ 76 (513)
T PRK14895 4 NVITRFAPSPTGFLHIGSARTALFNYLFARHHNGKFLLRIEDTDK------ERSTKEAVEAIFSGLKWLGLDWNG-EVIF 76 (513)
T ss_pred CeeEeeCCCCCCCccHHHHHHHHHHHHHHHHcCCEEEEEECCCCc------cccChHHHHHHHHHHHHcCCCCCC-Ccee
Confidence 356777665 99999999999999977665 6677777888622 112335566788889999999985 3899
Q ss_pred ccCcchh-hHHHH-H------HhccCCHHHHhchhh----------HHHHHhhh-------C-----------CCCc---
Q 018259 157 QSHVRAH-VELMW-L------LSSATPIGWLNKMIQ----------FKEKSHKA-------G-----------GENV--- 197 (359)
Q Consensus 157 qS~~~~~-~eL~w-~------L~~~~~i~~L~r~~~----------~k~~~~~~-------~-----------~~~~--- 197 (359)
||+..+. .+..- + +-|.++-.+|+.... |...-+.. + .+.+
T Consensus 77 QSeR~~~Y~~~a~~Li~~G~AY~CfCt~eel~~~r~~~~~~~~~~~Y~~~cr~~~~~~~~~~~~~~iR~k~p~~~~~~~~ 156 (513)
T PRK14895 77 QSKRNNLYKEAALKLLQNGKAYYCFTRQEEIERQRQQALENKQHFIFNSEWRDKDPSIYPTDIKPVIRLKTPREGSITIH 156 (513)
T ss_pred EeCcHHHHHHHHHHHHHcCCeEEecCcHHHHHHHHHhhhccCCCCCCChhhcccChhhhhcCCCeeEEEEcCCCCceEEE
Confidence 9985332 11111 1 457888887764421 10000000 0 0000
Q ss_pred --ccccchh----------------hHHHhhhh---hhcccceeecccchHHHHHHHHHHHHHhhhhhCCccccccCCCC
Q 018259 198 --GVALLTY----------------PVLMASDI---LLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRG 256 (359)
Q Consensus 198 --~~g~l~Y----------------PvLQAADI---l~~~adivpvG~DQ~~hieLaRdia~k~n~~~g~~~~~~~~~~~ 256 (359)
--|.+.+ |..+.|.+ ...+.++|..|.||..|.-.-..+.+.++
T Consensus 157 D~v~G~~~~~~~~~~D~Vi~RsDG~ptY~~a~vVDD~~m~ithVIRG~d~~~~t~~q~~l~~aLG--------------- 221 (513)
T PRK14895 157 DTLQGEVVIENSHIDDMVLLRADGTATYMLAVVVDDHDMGITHIIRGDDHLTNAARQLAIYQAFG--------------- 221 (513)
T ss_pred eecccceecccccCCCcEEEEeCCCcchhhHHHHHHHhcCCCEEEECchHhhhHHHHHHHHHHcC---------------
Confidence 0112211 22222222 12378999999999999998888888876
Q ss_pred CccccCCceecCCCCcccccCCCCCCcCCCCCCCCCCeeecCC------CHHHHHHHhhh
Q 018259 257 GAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLD------PKDVIANKIKR 310 (359)
Q Consensus 257 ~~~~~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~~s~I~L~D------~p~~I~kKI~r 310 (359)
+..|...+. +.|.++ +| +||||.+. ...+.+ .|+.|.+-+..
T Consensus 222 ---~~~p~~~H~---plv~~~-~g-~KLSKR~g----~~~i~~~r~~G~~Peai~n~la~ 269 (513)
T PRK14895 222 ---YAVPSMTHI---PLIHGA-DG-AKLSKRHG----ALGIEAYKDMGYLPESLCNYLLR 269 (513)
T ss_pred ---CCCCeEEEE---EeEEcC-CC-CccccccC----chhHHHHHHCCCCHHHHHHHHHH
Confidence 335776666 457776 66 79999973 444433 67777777764
No 35
>TIGR03838 queuosine_YadB glutamyl-queuosine tRNA(Asp) synthetase. This protein resembles a shortened glutamyl-tRNA ligase, but its purpose is to modify tRNA(Asp) at a queuosine position in the anticodon rather than to charge a tRNA with its cognate amino acid.
Probab=98.32 E-value=5.8e-06 Score=80.14 Aligned_cols=174 Identities=17% Similarity=0.164 Sum_probs=108.0
Q ss_pred CCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEeccceecCCCCHHHHHHHHHHHHHHHHHcCcCCCccEEEEccCcchhh
Q 018259 86 QPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQSHVRAHV 164 (359)
Q Consensus 86 ~PTG~lHLGnyig~i~~~~~lQ~-~~~~~i~IADlhA~t~~~~~~~l~~~~~~~~~~~lA~GlDp~kt~i~~qS~~~~~~ 164 (359)
.|||.+||||...++.+|...+. +.+.++-|-|.-. .....+....+..++..+||++++. .++||+..+.-
T Consensus 8 SPtG~lHiG~~rtAL~n~l~Ar~~gG~~iLRiEDtD~------~R~~~~~~~~I~~dL~wLGl~wDe~-~~~QS~r~~~Y 80 (272)
T TIGR03838 8 SPSGPLHFGSLVAALGSYLDARAHGGRWLVRIEDLDP------PREVPGAADDILRTLEAYGLHWDGE-VVYQSQRHALY 80 (272)
T ss_pred CCCCcccHHHHHHHHHHHHHHHHhCCEEEEEeCcCCC------CCCChHHHHHHHHHHHHcCCCCCCC-eeeeeCCHHHH
Confidence 58899999999999999976655 6667777888633 1123456677888888999999964 68999864322
Q ss_pred HHHH--H------HhccCCHHHHhchh-----hHH--HHH--hh-hCC----------CCcc-----cccc---------
Q 018259 165 ELMW--L------LSSATPIGWLNKMI-----QFK--EKS--HK-AGG----------ENVG-----VALL--------- 202 (359)
Q Consensus 165 eL~w--~------L~~~~~i~~L~r~~-----~~k--~~~--~~-~~~----------~~~~-----~g~l--------- 202 (359)
..+. + +.|.+|-.++++.. .|. .+. .. .+. ..+. .|.+
T Consensus 81 ~~~~~~L~~~G~aY~C~Ct~eel~~~~~~~~~~y~~~cr~~~~~~~~~~~~~Rlk~~~~~~~~~D~~~g~~~~~~~~~~~ 160 (272)
T TIGR03838 81 QAALDRLLAAGLAYPCQCTRKEIAAAAGDGGGIYPGTCRNGLLGRPARPAAWRLRVPDGVIAFDDRLQGPQQQDLAAAVG 160 (272)
T ss_pred HHHHHHHHHcCCEEecCCCHHHHHHHhcCCCCCCCchhhcccccccCCCceEEEecCCCCceEEEeeeeEEEecCcccCC
Confidence 1111 1 45888888876541 111 110 00 000 0000 1111
Q ss_pred ---h-----hhHHHhhhhh---hcccceeecccchHHHHHHHHHHHHHhhhhhCCccccccCCCCCccccCCceecCCCC
Q 018259 203 ---T-----YPVLMASDIL---LYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAG 271 (359)
Q Consensus 203 ---~-----YPvLQAADIl---~~~adivpvG~DQ~~hieLaRdia~k~n~~~g~~~~~~~~~~~~~~~~~P~~l~~~~~ 271 (359)
+ ||..+=|.++ ..+.++|.=|.|...+--.=.-|.+-|+ ++.|...+.
T Consensus 161 D~vi~R~Dg~ptY~fA~vVDD~~~gIThViRG~D~l~~t~~q~~l~~aLg------------------~~~P~y~H~--- 219 (272)
T TIGR03838 161 DFVLRRADGLFAYQLAVVVDDAAQGITHVVRGADLLDSTPRQIYLQRLLG------------------LPPPRYLHL--- 219 (272)
T ss_pred CEEEEecCCCccccChhhhhcccCCCCEEEeCHhhhhccHHHHHHHHHhC------------------CCCCeEEec---
Confidence 1 2333322222 2468999999998887766667777665 456876666
Q ss_pred cccccCCCCCCcCCCCCC
Q 018259 272 ARVMSLTDGLSKMSKSAP 289 (359)
Q Consensus 272 ~~l~sL~dg~~KMSKS~p 289 (359)
+.|.+. +| +|+||++.
T Consensus 220 pll~~~-~g-~kLSKR~~ 235 (272)
T TIGR03838 220 PLVVNA-DG-EKLSKQNG 235 (272)
T ss_pred hhhhCC-CC-CeeeccCC
Confidence 457776 67 69999974
No 36
>TIGR00464 gltX_bact glutamyl-tRNA synthetase, bacterial family. The glutamyl-tRNA synthetases of the eukaryotic cytosol and of the Archaea are more similar to glutaminyl-tRNA synthetases than to bacterial glutamyl-tRNA synthetases. This alignment models just the bacterial and mitochondrial forms of the enzyme. In many species, the charging of tRNA(gln) proceeds first through misacylation with Glu and then transamidation. For this reason, glutamyl-tRNA synthetases may act on both tRNA(gln) and tRNA(glu). This model is highly specific. Proteins with positive scores below the trusted cutoff may be fragments rather than full-length sequences.
Probab=98.31 E-value=7.3e-06 Score=84.98 Aligned_cols=191 Identities=19% Similarity=0.206 Sum_probs=117.4
Q ss_pred CCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEeccceecCCCCHHHHHHHHHHHHHHHHHcCcCCCccEEEEccCcchh-
Q 018259 86 QPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQSHVRAH- 163 (359)
Q Consensus 86 ~PTG~lHLGnyig~i~~~~~lQ~-~~~~~i~IADlhA~t~~~~~~~l~~~~~~~~~~~lA~GlDp~kt~i~~qS~~~~~- 163 (359)
.|||.+||||...++.+|..... +.+.++-|-|.-. .....+....+..++..+||+++. ..|.||+..+.
T Consensus 9 sPtG~lHiG~~rtal~n~l~Ar~~~G~~iLRieDtD~------~R~~~~~~~~i~~~L~wlGl~~de-~~~~QS~r~~~y 81 (470)
T TIGR00464 9 SPTGYLHIGGARTALFNYLFAKHTGGEFILRIEDTDL------ERNIEEAEEAILEGLKWLGISWDE-GPYYQSQRLDIY 81 (470)
T ss_pred CCCCcccHHHHHHHHHHHHHHHHcCCEEEEEeCcCCC------ccCChHHHHHHHHHHHHCCCCCCC-CeeehhCCHHHH
Confidence 68899999999999999976654 6667777777622 122345667788889999999995 48999985432
Q ss_pred hHHHH-H------HhccCCHHHHhchhh-------------------HHHHHhh--hCC---------C-C-c-----cc
Q 018259 164 VELMW-L------LSSATPIGWLNKMIQ-------------------FKEKSHK--AGG---------E-N-V-----GV 199 (359)
Q Consensus 164 ~eL~w-~------L~~~~~i~~L~r~~~-------------------~k~~~~~--~~~---------~-~-~-----~~ 199 (359)
.+..- + +.|.+|-.+|+.+.. -.+.... .+. . . + -.
T Consensus 82 ~~~~~~L~~~g~aY~C~ct~~~l~~~r~~~~~~~~~~~y~~~cr~l~~~~~~~~~~~g~~~~iR~k~~~~~~~~~~D~~~ 161 (470)
T TIGR00464 82 KKYAKELLEEGLAYRCYCSKERLERLREEQKANKETPRYDGRCRNLHEEEIENKLAKGIPPVVRFKIPQEAVVSFNDQVR 161 (470)
T ss_pred HHHHHHHHHcCCEEecCCChHHHHHHHHHHhhCCCCCCCCCCcccCCHHHHHhHHhcCCCceEEEEcCCCCceeEEeccc
Confidence 22111 1 447788777753311 0000000 000 0 0 0 00
Q ss_pred ccch----------------hhHHHhh---hhhhcccceeecccchHHHHHHHHHHHHHhhhhhCCccccccCCCCCccc
Q 018259 200 ALLT----------------YPVLMAS---DILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIF 260 (359)
Q Consensus 200 g~l~----------------YPvLQAA---DIl~~~adivpvG~DQ~~hieLaRdia~k~n~~~g~~~~~~~~~~~~~~~ 260 (359)
|.+. +|..+-| |=...+.|+|..|.||..|...-..+.+.++ +
T Consensus 162 G~~~~~~~~~~D~Vl~RsdG~ptY~~A~~vdD~~~~ithvIrG~d~~~~t~~~~~l~~aLg------------------~ 223 (470)
T TIGR00464 162 GEITFQNSELDDFVILRSDGSPTYNFAVVVDDYLMKITHVIRGEDHISNTPKQILIYQALG------------------W 223 (470)
T ss_pred ceEEecCccCCCeEEEecCCCcccccHHHHHHHhCCCCEEEECchhhcCHHHHHHHHHHcC------------------C
Confidence 1111 2222211 1122379999999999999999999998886 3
Q ss_pred cCCceecCCCCcccccCCCCCCcCCCCCCCCCCeeecCC------CHHHHHHHhhh
Q 018259 261 KVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLD------PKDVIANKIKR 310 (359)
Q Consensus 261 ~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~~s~I~L~D------~p~~I~kKI~r 310 (359)
..|...+. +.+.++ +| +||||.. +.+.|.| .|+.+.+-+.+
T Consensus 224 ~~p~~~H~---p~l~~~-~g-~kLSKR~----g~~~l~~l~~~g~~p~a~~~~~~~ 270 (470)
T TIGR00464 224 KIPVFAHL---PMILDE-DG-KKLSKRD----GATSIMQFKEQGYLPEALINYLAL 270 (470)
T ss_pred CCCeEEEE---eeeecC-CC-ccccccC----CCccHHHHHHCCCCHHHHHHHHHH
Confidence 35766665 346665 66 6999996 3555543 57666666654
No 37
>COG0008 GlnS Glutamyl- and glutaminyl-tRNA synthetases [Translation, ribosomal structure and biogenesis]
Probab=98.23 E-value=4.4e-06 Score=86.54 Aligned_cols=179 Identities=19% Similarity=0.179 Sum_probs=111.9
Q ss_pred EEEee--CCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEeccceecCCCCHHHHHHHHHHHHHHHHHcCcCCCccEEEEc
Q 018259 81 IVSGV--QPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQ 157 (359)
Q Consensus 81 i~sGi--~PTG~lHLGnyig~i~~~~~lQ~-~~~~~i~IADlhA~t~~~~~~~l~~~~~~~~~~~lA~GlDp~kt~i~~q 157 (359)
|.+=| .|||.+||||...++.+|...+. +.++++-|-|.-. . ....+....+..++..+||+++.. +|.|
T Consensus 10 v~tRFAPsPtG~LHiG~artAl~N~~~Ar~~~G~fiLRiEDTD~----~--R~~~e~~~~I~~~L~WLGl~wde~-~~~Q 82 (472)
T COG0008 10 VRTRFAPSPTGYLHIGHARTALLNYLYARKYGGKFILRIEDTDP----E--RETPEAEDAILEDLEWLGLDWDEG-PYYQ 82 (472)
T ss_pred eEEEECcCCCCccchHHHHHHHHHHHHHHHhCCEEEEEecCCCC----C--CCCHHHHHHHHHHHHhcCCCCCCc-eeeh
Confidence 55555 56799999999999999977665 6678888888632 1 223455667777888899999975 8999
Q ss_pred cCcchhh--HHHHH------HhccCCHHHHhchhh-----------HH---------HHHhhhCC--------------C
Q 018259 158 SHVRAHV--ELMWL------LSSATPIGWLNKMIQ-----------FK---------EKSHKAGG--------------E 195 (359)
Q Consensus 158 S~~~~~~--eL~w~------L~~~~~i~~L~r~~~-----------~k---------~~~~~~~~--------------~ 195 (359)
|+..+.- -..++ +-|.++-.+|+.+.. |. ++....+. .
T Consensus 83 S~r~~~Y~~~~~~Li~~G~AY~c~ct~eele~~R~~~~~~g~~p~~y~r~~~~L~~~~~~~~~~~~~~~viR~k~~~~~~ 162 (472)
T COG0008 83 SERFDIYYEYAEKLIEKGKAYVCYCTPEELEEMRELRGALGEPPPSYDRDERNLTLFEKMADLGEGGPAVVRLKIPMAHP 162 (472)
T ss_pred hhhHHHHHHHHHHHHHCCCeEEecCCHHHHHHHHHHHhhcCCCCCCCCchhhccchHHHHhhcccCCCeEEEEeCCCCCC
Confidence 9864321 12223 347788766655421 11 01111000 0
Q ss_pred -----Ccccccchhh------HHHhhhhhh------------cccceeecccchHHHHHHHHHHHHHhhhhhCCcccccc
Q 018259 196 -----NVGVALLTYP------VLMASDILL------------YQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKL 252 (359)
Q Consensus 196 -----~~~~g~l~YP------vLQAADIl~------------~~adivpvG~DQ~~hieLaRdia~k~n~~~g~~~~~~~ 252 (359)
+.-.|.+..+ +++-+|++. .+.++|.-|.|+..+=..-+-|-+-|+
T Consensus 163 ~~~~~D~v~g~i~~~~~~~~dv~~r~dg~ptY~favvvDD~~mgITHviRG~d~~~nt~~q~~l~~~lg----------- 231 (472)
T COG0008 163 GPVFRDLVRGRIVFAPKHPDFVILRYDGYPTYNFAVVVDDHLMGITHVLRGEDHLDNTPRQIWLYEALG----------- 231 (472)
T ss_pred CCccccceeeeEecCccCCcceeecCCCCcccceeeeechhhcCCceEEechhhccCCHHHHHHHHHcC-----------
Confidence 0112333332 333344433 368999999999887777666666665
Q ss_pred CCCCCccccCCceecCCCCcccccCCCCCCcCCCCCC
Q 018259 253 GGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAP 289 (359)
Q Consensus 253 ~~~~~~~~~~P~~l~~~~~~~l~sL~dg~~KMSKS~p 289 (359)
++.|...+. ++|.+ -+| +||||++.
T Consensus 232 -------~~~P~~~H~---~li~~-~~g-~kLSKr~~ 256 (472)
T COG0008 232 -------WPPPVYAHL---PLLLN-EDG-KKLSKRKG 256 (472)
T ss_pred -------CCCCcEEEe---eeeec-CCC-CeecCccC
Confidence 456877776 55766 455 79999973
No 38
>cd00807 GlnRS_core catalytic core domain of glutaminyl-tRNA synthetase. Glutaminyl-tRNA synthetase (GlnRS) cataytic core domain. These enzymes attach Gln to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. GlnRS contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea and most bacteria lack GlnRS. In these organisms, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme.
Probab=98.20 E-value=7.4e-06 Score=77.95 Aligned_cols=157 Identities=15% Similarity=0.089 Sum_probs=97.0
Q ss_pred CCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEeccceecCCCCHHHHHHHHHHHHHHHHHcCcCCCccEEEEccCcchh-
Q 018259 86 QPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQSHVRAH- 163 (359)
Q Consensus 86 ~PTG~lHLGnyig~i~~~~~lQ~-~~~~~i~IADlhA~t~~~~~~~l~~~~~~~~~~~lA~GlDp~kt~i~~qS~~~~~- 163 (359)
.|||.+||||...++.+|...+. +.+.++-|-|.-. .....+....+.+++..+||+++ .++.||+..+.
T Consensus 9 sPtG~lHlG~~~~al~~~l~Ar~~~G~~iLRieDtD~------~R~~~~~~~~I~~dL~wlGl~wD--~~~~QS~r~~~Y 80 (238)
T cd00807 9 EPNGYLHIGHAKAILLNFGYAKKYGGRCNLRFDDTNP------EKEEEEYVDSIKEDVKWLGIKPY--KVTYASDYFDQL 80 (238)
T ss_pred CCCCcccHHHHHHHHHHHHHHHHhCCEEEEEecCCCC------cccchHHHHHHHHHHHHcCCCCC--CceecccCHHHH
Confidence 68899999999999999876654 5667777777621 12344667788889999999999 58899985432
Q ss_pred hHHHHHHhccCCHHHHhchhhHHHHHhhhCCCCcccccchhhHHHhh---hhhhcccceeecccchHHHHHHHHHHHHHh
Q 018259 164 VELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMAS---DILLYQSDFVPVGEDQKQHLELTRELAERV 240 (359)
Q Consensus 164 ~eL~w~L~~~~~i~~L~r~~~~k~~~~~~~~~~~~~g~l~YPvLQAA---DIl~~~adivpvG~DQ~~hieLaRdia~k~ 240 (359)
.+..-.|- ++-..|.. ...+ + ...+||..+=| |=...+.++|.-|.|....-..-.-+.+.+
T Consensus 81 ~~~~~~L~--------~~g~aY~~--~~~~-~----~~~i~ptY~lA~vVDD~~~gIThVvRG~D~l~~t~~Q~~l~~aL 145 (238)
T cd00807 81 YEYAEQLI--------KKGKAYVH--HRTG-D----KWCIYPTYDFAHPIVDSIEGITHSLCTLEFEDRRPSYYWLCDAL 145 (238)
T ss_pred HHHHHHHH--------HcCCeecC--CCCC-C----CEEEEeccccceEeeccccCCCeEEechhhhcCCHHHHHHHHHc
Confidence 11111110 00011110 0001 1 12235555544 334578999999999988777666777766
Q ss_pred hhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCcCCCCCC
Q 018259 241 NYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAP 289 (359)
Q Consensus 241 n~~~g~~~~~~~~~~~~~~~~~P~~l~~~~~~~l~sL~dg~~KMSKS~p 289 (359)
+ ++.|..+.. ..+ +. +| .|+||++.
T Consensus 146 g------------------~~~P~~~~~---~hl-n~-~g-~kLSKR~~ 170 (238)
T cd00807 146 R------------------LYRPHQWEF---SRL-NL-TY-TVMSKRKL 170 (238)
T ss_pred C------------------CCCCceeEE---EEE-CC-CC-CCccCcCc
Confidence 5 345753322 223 43 66 69999973
No 39
>cd02156 nt_trans nucleotidyl transferase superfamily. nt_trans (nucleotidyl transferase) This superfamily includes the class I amino-acyl tRNA synthetases, pantothenate synthetase (PanC), ATP sulfurylase, and the cytidylyltransferases, all of which have a conserved dinucleotide-binding domain.
Probab=98.14 E-value=1.1e-05 Score=66.53 Aligned_cols=56 Identities=16% Similarity=0.169 Sum_probs=42.3
Q ss_pred EEEeeCCCCcchhhhHHHHHHHHHHHhccCcEEEEEeccceecCCCCHHHHHHHHHHHHH
Q 018259 81 IVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRETAA 140 (359)
Q Consensus 81 i~sGi~PTG~lHLGnyig~i~~~~~lQ~~~~~~i~IADlhA~t~~~~~~~l~~~~~~~~~ 140 (359)
+++|-.+ +.+|+||+.+ ++.+.++++ .+++.++|.|+...+.++..++++.....+
T Consensus 2 ~~~~G~F-dp~H~GH~~l-~~~a~~~~d--~~i~~i~~~~~~~~~~~~~~~~~R~~~l~~ 57 (105)
T cd02156 2 ARFPGEP-GYLHIGHAKL-ICRAKGIAD--QCVVRIDDNPPVKVWQDPHELEERKESIEE 57 (105)
T ss_pred EEeCCCC-CCCCHHHHHH-HHHHHHhCC--cEEEEEcCCCcccccCChHHHHHHHHHHHH
Confidence 5677788 8999999988 688988874 689999999998765555566655544433
No 40
>cd09287 GluRS_non_core catalytic core domain of non-discriminating glutamyl-tRNA synthetase. Non-discriminating Glutamyl-tRNA synthetase (GluRS) cataytic core domain. These enzymes attach Glu to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea and most bacteria lack GlnRS. In these organisms, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme.
Probab=98.14 E-value=1.8e-05 Score=75.40 Aligned_cols=162 Identities=20% Similarity=0.164 Sum_probs=101.4
Q ss_pred EEeeCCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEeccceecCCCCHHHHHHHHHHHHHHHHHcCcCCCccEEEEccCc
Q 018259 82 VSGVQPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQSHV 160 (359)
Q Consensus 82 ~sGi~PTG~lHLGnyig~i~~~~~lQ~-~~~~~i~IADlhA~t~~~~~~~l~~~~~~~~~~~lA~GlDp~kt~i~~qS~~ 160 (359)
=.|-.|||.+||||...++.+|+..+. +...++-|-|.-.-.. ....+....+.+++.++|++++ .++.||+.
T Consensus 5 RfaPsPtG~lHiG~~rtal~~~l~Ar~~~G~~ilRieDtD~~r~----~~~~~~~~~i~~dL~wLGl~~d--~~~~qS~r 78 (240)
T cd09287 5 RFAPNPNGPLHLGHARAAILNGEYAKMYGGKFILRFDDTDPRTK----RPDPEAYDMIPEDLEWLGVKWD--EVVIASDR 78 (240)
T ss_pred eCCCCCCCCccHHHHHHHHHHHHHHHHcCCEEEEeeCcCCCCcc----cchHHHHHHHHHHHHHcCCCCC--Cccchhcc
Confidence 346689999999999999988876654 4556667777622110 1244555678899999999998 57899985
Q ss_pred ch-hhHHHHHHhccCCHHHHhchhhHHHHHhhhCCCCcccccchhhHHHhhhh---hhcccceeecccchHHHHHHHHHH
Q 018259 161 RA-HVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDI---LLYQSDFVPVGEDQKQHLELTREL 236 (359)
Q Consensus 161 ~~-~~eL~w~L~~~~~i~~L~r~~~~k~~~~~~~~~~~~~g~l~YPvLQAADI---l~~~adivpvG~DQ~~hieLaRdi 236 (359)
.+ +.+..-.|- ++-..|. ....+ +. .+.||..+=|-+ ...+.++|.-|.|...+-..-.-+
T Consensus 79 ~~~y~~~~~~Li--------~~G~aY~--~~~~~-~~----~~i~ptY~la~vVDD~~~gIThViRg~d~~~~t~~q~~l 143 (240)
T cd09287 79 IELYYEYARKLI--------EMGGAYV--HPRTG-SK----YRVWPTLNFAVAVDDHLLGVTHVLRGKDHIDNTEKQRYI 143 (240)
T ss_pred HHHHHHHHHHHH--------HcCCccc--CcccC-Cc----EEEEEccccceeeeccccCCCeEEechhhhhCCHHHHHH
Confidence 43 222111110 1111121 01111 11 133555554433 447899999999998888777777
Q ss_pred HHHhhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCcCCCCC
Q 018259 237 AERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSA 288 (359)
Q Consensus 237 a~k~n~~~g~~~~~~~~~~~~~~~~~P~~l~~~~~~~l~sL~dg~~KMSKS~ 288 (359)
.+.++ ++.|...+. ++|.. +| +||||.+
T Consensus 144 ~~~Lg------------------~~~P~~~H~---pll~~--~~-~kLSKR~ 171 (240)
T cd09287 144 YEYFG------------------WEYPETIHW---GRLKI--EG-GKLSTSK 171 (240)
T ss_pred HHHcC------------------CCCCcEEee---eeecC--CC-Ceecccc
Confidence 77765 445776665 44532 45 8999997
No 41
>PLN03233 putative glutamate-tRNA ligase; Provisional
Probab=98.13 E-value=9.6e-06 Score=84.85 Aligned_cols=177 Identities=16% Similarity=0.124 Sum_probs=108.8
Q ss_pred eEEEee--CCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEeccceecCCCCHHHHHHHHHHHHHHHHHcCcCCCccEEEE
Q 018259 80 RIVSGV--QPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFV 156 (359)
Q Consensus 80 ~i~sGi--~PTG~lHLGnyig~i~~~~~lQ~-~~~~~i~IADlhA~t~~~~~~~l~~~~~~~~~~~lA~GlDp~kt~i~~ 156 (359)
.+.+=| .|||.+||||...++.+|...+. +.++++-|=|.-. .....+....+..++..+|++++. ++.
T Consensus 11 ~v~tRFAPsPtG~LHiGharaAlln~l~Ar~~gG~~iLRiEDTDp------~R~~~e~~~~I~~dL~WLGl~wD~--~~~ 82 (523)
T PLN03233 11 QIVTRFPPEPSGYLHIGHAKAALLNDYYARRYKGRLILRFDDTNP------SKEKAEFEESIIEDLGKIEIKPDS--VSF 82 (523)
T ss_pred eEEEeeCCCCCCcccHHHHHHHHHHHHHHHHhCCEEEEEECCCCC------CccchHHHHHHHHHHHHhCCCCCC--Ccc
Confidence 355555 67799999999999999976655 5566777777522 123456777888899999999984 789
Q ss_pred ccCcchhh-HHHHH-------HhccCCHHHHhchh-----------h-------HHHHHh-hhCC-------------CC
Q 018259 157 QSHVRAHV-ELMWL-------LSSATPIGWLNKMI-----------Q-------FKEKSH-KAGG-------------EN 196 (359)
Q Consensus 157 qS~~~~~~-eL~w~-------L~~~~~i~~L~r~~-----------~-------~k~~~~-~~~~-------------~~ 196 (359)
||+..+.- +.+-. +.|.++-.+|+... + |..+.+ ...+ .+
T Consensus 83 qSdr~~~y~~~a~~Li~~G~AY~C~cs~eel~~~r~~~~~~~~R~~s~ee~l~~~~~m~~G~~~~~~~~lR~K~d~~~~n 162 (523)
T PLN03233 83 TSDYFEPIRCYAIILIEEGLAYMDDTPQEEMKKERADRAESKHRNQSPEEALEMFKEMCSGKEEGGAWCLRAKIDMQSDN 162 (523)
T ss_pred ccccHHHHHHHHHHHHHcCCeEecCCCHHHHHHHHhhhccCccccCCHHHHHHHHHHHhcccccCCCeEEEEeCcccCCC
Confidence 99975432 22111 45788877774221 1 111100 0000 00
Q ss_pred cccccc------------------hhhHHHhhhhhh---cccceeecccchHHHHHHHHHHHHHhhhhhCCccccccCCC
Q 018259 197 VGVALL------------------TYPVLMASDILL---YQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGR 255 (359)
Q Consensus 197 ~~~g~l------------------~YPvLQAADIl~---~~adivpvG~DQ~~hieLaRdia~k~n~~~g~~~~~~~~~~ 255 (359)
.++..+ .||..+=|-.+- .+.++|.-|.|...+-..-.-+.+.++
T Consensus 163 ~~~~D~Vi~R~d~~~h~~~Gd~~~~~PtY~fA~~VDD~l~gITHviRg~E~~~~t~~q~~l~~aLg-------------- 228 (523)
T PLN03233 163 GTLRDPVLFRQNTTPHHRSGTAYKAYPTYDLACPIVDSIEGVTHALRTTEYDDRDAQFFWIQKALG-------------- 228 (523)
T ss_pred CCCcCCEEEEEcCCcccccCCcccceeccCCceeeeccccCCCeEEechhhhcCCHHHHHHHHHhC--------------
Confidence 111111 245555443332 478999999999988888778888776
Q ss_pred CCccccCCceecCCCCcccccCCCCCCcCCCCC
Q 018259 256 GGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSA 288 (359)
Q Consensus 256 ~~~~~~~P~~l~~~~~~~l~sL~dg~~KMSKS~ 288 (359)
++.|.... + . ..++ +| .||||++
T Consensus 229 ----~~~P~~~~-f--~-rln~-~~-~kLSKR~ 251 (523)
T PLN03233 229 ----LRRPRIHA-F--A-RMNF-MN-TVLSKRK 251 (523)
T ss_pred ----CCCCeeee-e--E-EECC-CC-CcccccC
Confidence 34576433 2 2 4455 55 5999995
No 42
>PRK12410 glutamylglutaminyl-tRNA synthetase; Provisional
Probab=98.11 E-value=1.4e-05 Score=81.95 Aligned_cols=89 Identities=25% Similarity=0.288 Sum_probs=62.9
Q ss_pred CCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEeccceecCCCCHHHHHHHHHHHHHHHHHcCcCCCccEEEEccCcchh-
Q 018259 86 QPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQSHVRAH- 163 (359)
Q Consensus 86 ~PTG~lHLGnyig~i~~~~~lQ~-~~~~~i~IADlhA~t~~~~~~~l~~~~~~~~~~~lA~GlDp~kt~i~~qS~~~~~- 163 (359)
.|||.+||||...++.+|...+. +.+.++-|-|.-. .....+....+..++..+||+++. .|.||+..+.
T Consensus 7 SPTG~LHiG~artAL~n~l~Ar~~gG~fiLRiEDTD~------~R~~~e~~~~I~~~L~WlGl~wDe--~y~QSeR~~~Y 78 (433)
T PRK12410 7 SPTGDMHIGNLRAAIFNYIVAKQQNEDFLIRIEDTDK------ERNIEGKDKEILEILNLFGISWDK--LVYQSENLKFH 78 (433)
T ss_pred CCCCcccHHHHHHHHHHHHHHHHcCCEEEEEeCcCCC------CcCChHHHHHHHHHHHHcCCCCCC--CeehhccHHHH
Confidence 58999999999999999977765 6677777877632 112345667788888899999995 7999985331
Q ss_pred hHHHH-H------HhccCCHHHHhch
Q 018259 164 VELMW-L------LSSATPIGWLNKM 182 (359)
Q Consensus 164 ~eL~w-~------L~~~~~i~~L~r~ 182 (359)
.+..- + +-|.++-.+|+.+
T Consensus 79 ~~~a~~Li~~G~AY~C~cs~eel~~~ 104 (433)
T PRK12410 79 RQMAEKLLSEKKAFACFCSEEELEAK 104 (433)
T ss_pred HHHHHHHHHcCCeeeecCCHHHHHHH
Confidence 11111 1 4578888877644
No 43
>PRK04156 gltX glutamyl-tRNA synthetase; Provisional
Probab=98.08 E-value=2.4e-05 Score=82.69 Aligned_cols=181 Identities=18% Similarity=0.147 Sum_probs=110.0
Q ss_pred CceEEEeeCCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEeccceecCCCCHHHHHHHHHHHHHHHHHcCcCCCccEEEE
Q 018259 78 KKRIVSGVQPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFV 156 (359)
Q Consensus 78 ~~~i~sGi~PTG~lHLGnyig~i~~~~~lQ~-~~~~~i~IADlhA~t~~~~~~~l~~~~~~~~~~~lA~GlDp~kt~i~~ 156 (359)
+.+...+=.|||.+||||...++.+|...+. +..+++-|-|.-.-+ .....+....+.+++..+|++++ .++.
T Consensus 101 ~V~tRFaPsPtG~LHIGharaalln~~~Ar~~~G~~iLRidDTDpk~----~R~~~e~~~~I~edL~wLGl~wD--~~~~ 174 (567)
T PRK04156 101 KVVMRFAPNPSGPLHLGHARAAILNDEYAKMYGGKFILRFEDTDPRT----KRPDPEAYDMILEDLKWLGVKWD--EVVI 174 (567)
T ss_pred eEEEEeCCCCCCCccHHHHHHHHHHHHHHHHcCCEEEEeEccCCCCc----ccchHHHHHHHHHHHHHcCCCCC--CccC
Confidence 3455566688899999999999988865554 556777777763211 12244555677888999999998 4789
Q ss_pred ccCcchhh-HHHH-H------HhccCCHHHHhchhh------------------HHHHH-----------hhhCC---CC
Q 018259 157 QSHVRAHV-ELMW-L------LSSATPIGWLNKMIQ------------------FKEKS-----------HKAGG---EN 196 (359)
Q Consensus 157 qS~~~~~~-eL~w-~------L~~~~~i~~L~r~~~------------------~k~~~-----------~~~~~---~~ 196 (359)
||+..+.. +..- + +.|.++-.++++... |.++. |...+ .+
T Consensus 175 qSdr~~~y~~~a~~Li~~G~AY~C~cs~ee~~~~r~~g~~~~~R~~~~ee~l~~~e~m~~G~~~~g~~vlR~k~d~~~~n 254 (567)
T PRK04156 175 QSDRLEIYYEYARKLIEMGGAYVCTCDPEEFKELRDAGKPCPHRDKSPEENLELWEKMLDGEYKEGEAVVRVKTDLEHPN 254 (567)
T ss_pred cccCHHHHHHHHHHHHHcCCCccCCCCHHHHHHHHhcCCCCCCcCCCHHHHHHHHHHhhcCccccCCeEEEEECcccCCC
Confidence 99864321 1111 1 346666655532210 00000 00000 00
Q ss_pred cc------------------cccchhhHHHhh---hhhhcccceeecccchHHHHHHHHHHHHHhhhhhCCccccccCCC
Q 018259 197 VG------------------VALLTYPVLMAS---DILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGR 255 (359)
Q Consensus 197 ~~------------------~g~l~YPvLQAA---DIl~~~adivpvG~DQ~~hieLaRdia~k~n~~~g~~~~~~~~~~ 255 (359)
.+ -+-..||.++=| |-...+.++|.-|.|...+-..-..+.+.|+
T Consensus 255 ~~~rD~v~~R~~~~~h~~~Gd~~~i~PtY~fA~~VDD~l~GITHViRg~d~~~~t~~Q~~l~~~Lg-------------- 320 (567)
T PRK04156 255 PSVRDWVAFRIVKTPHPRVGDKYRVWPTYNFAVAVDDHLLGVTHVLRGKDHIDNTEKQRYIYDYFG-------------- 320 (567)
T ss_pred CCccccEEEEEcCCCccccCCCeEEEEEeccCceeeecCCCCCeEEcccccccChHHHHHHHHHcC--------------
Confidence 00 011236665433 3334579999999999988888777877775
Q ss_pred CCccccCCceecCCCCcccccCCCCCCcCCCCC
Q 018259 256 GGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSA 288 (359)
Q Consensus 256 ~~~~~~~P~~l~~~~~~~l~sL~dg~~KMSKS~ 288 (359)
+..|...+. ++|. + +| .|||||.
T Consensus 321 ----~~~P~~~H~---~~L~-~-~g-~kLSKR~ 343 (567)
T PRK04156 321 ----WEYPETIHY---GRLK-I-EG-FVLSTSK 343 (567)
T ss_pred ----CCCceEEEc---ceec-C-CC-ceeeccc
Confidence 345877766 4453 4 56 5999996
No 44
>PF00749 tRNA-synt_1c: tRNA synthetases class I (E and Q), catalytic domain; InterPro: IPR020058 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Glutamyl-tRNA synthetase (6.1.1.17 from EC) is a class Ic synthetase and shows several similarities with glutaminyl-tRNA synthetase concerning structure and catalytic properties. It is an alpha2 dimer. To date one crystal structure of a glutamyl-tRNA synthetase (Thermus thermophilus) has been solved. The molecule has the form of a bent cylinder and consists of four domains. The N-terminal half (domains 1 and 2) contains the 'Rossman fold' typical for class I synthetases and resembles the corresponding part of Escherichia coli GlnRS, whereas the C-terminal half exhibits a GluRS-specific structure []. ; GO: 0000166 nucleotide binding, 0005524 ATP binding, 0016876 ligase activity, forming aminoacyl-tRNA and related compounds, 0043039 tRNA aminoacylation, 0005737 cytoplasm; PDB: 2HZ7_A 2CFO_A 4A91_A 1NZJ_A 1N78_A 1G59_C 2CV2_A 2CV1_A 2CV0_B 1GLN_A ....
Probab=98.01 E-value=6.6e-05 Score=74.09 Aligned_cols=194 Identities=19% Similarity=0.133 Sum_probs=110.1
Q ss_pred CCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEeccceecCCCCHHHHHHHHHHHHHHHHHcCcCCCccEEEEccCcchhh
Q 018259 86 QPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQSHVRAHV 164 (359)
Q Consensus 86 ~PTG~lHLGnyig~i~~~~~lQ~-~~~~~i~IADlhA~t~~~~~~~l~~~~~~~~~~~lA~GlDp~kt~i~~qS~~~~~~ 164 (359)
.|||.|||||...++.+|...+. +.+.++-|-|.-. .....+....+..++..+||+++ -.++.||+..+.-
T Consensus 9 sPtG~lHiG~~r~al~n~~~Ar~~~G~~iLRieDtD~------~R~~~~~~~~i~~~L~wlGl~~D-~~~~~QS~r~~~Y 81 (314)
T PF00749_consen 9 SPTGYLHIGHARTALLNYLFARKYGGKFILRIEDTDP------ERCRPEFYDAILEDLRWLGLEWD-YGPYYQSDRLEIY 81 (314)
T ss_dssp -SSSS-BHHHHHHHHHHHHHHHHTTSEEEEEEETSST------TTCHHHHHHHHHHHHHHHT---S-TCEEEGGGGHHHH
T ss_pred CCCCCcccchhHHHHHHHHHHhccCceEEEecccccc------ccchhhHHHHHHhheeEEEEecC-CeEEeHHHHHHHH
Confidence 68899999999999999976655 5667777877622 12234666778888899999998 4588899864432
Q ss_pred HHH--------HHHhccCCHHHHhchhhH------------HH--------HHh--h-hCC----------C-C-----c
Q 018259 165 ELM--------WLLSSATPIGWLNKMIQF------------KE--------KSH--K-AGG----------E-N-----V 197 (359)
Q Consensus 165 eL~--------w~L~~~~~i~~L~r~~~~------------k~--------~~~--~-~~~----------~-~-----~ 197 (359)
+.+ ..+.|.++-.+|+....- .. +.+ . .+. + . .
T Consensus 82 ~~~~~~L~~~g~aY~C~Csr~~l~~~r~~~~~~~~~~~~~y~~~c~~~~~~~~~~~~~~~~~~~iRlk~~~~~~~~~~D~ 161 (314)
T PF00749_consen 82 QEAAEKLIDKGKAYPCFCSREELKAAREAQEGAGCPHRPRYPGTCRELTEEEMRAGLAKGGPAVIRLKVPMESPIAFRDL 161 (314)
T ss_dssp HHHHHHHHHTTSEEEEESEHHHHHHHHHHHHHTTSTTTTSBHHHHHCHHHHHHHHHHHTTTSEEEEE-SSSTCCEEEEET
T ss_pred HHHHHHHhhcCCCccccCCHHHHHHHHHHhhccCCCccccchhhhhhhhHHHHHhhhccCCceeeeeecccccccccccC
Confidence 111 114577777766544322 10 000 0 000 0 0 0
Q ss_pred ccccc-------hhhHHHhhhh------------hhcccceeecccchHHHHHHHHHHHHHhhhhhCCccccccCCCCCc
Q 018259 198 GVALL-------TYPVLMASDI------------LLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGA 258 (359)
Q Consensus 198 ~~g~l-------~YPvLQAADI------------l~~~adivpvG~DQ~~hieLaRdia~k~n~~~g~~~~~~~~~~~~~ 258 (359)
-.|.+ -.++++-+|. ...+.++|.=|.|....-..-.-|.+.|+
T Consensus 162 v~g~i~~~~~~~~D~vi~r~dg~ptY~fA~vVDD~~~gITHViRG~D~l~~t~~Q~~L~~~Lg----------------- 224 (314)
T PF00749_consen 162 VRGRIIFDPSDLGDFVIRRSDGYPTYHFAVVVDDHLMGITHVIRGEDLLSSTPRQILLYEALG----------------- 224 (314)
T ss_dssp TTEEEEEEGGGSBTEEEESTTSEB-HHHHHHHHHHHTT-SEEEEEGGGTTCHHHHHHHHHHCT-----------------
T ss_pred cceeeeeccccCCchhccccccCcccccceeecccccccCeEEEccccccccHHHHHHHHHhC-----------------
Confidence 01111 1222222222 23478999999999888777777877776
Q ss_pred cccCCceecCCCCcccccCCCCCCcCCCCCCCCCCee------ecCCCHHHHHHHhhhc
Q 018259 259 IFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRI------NLLDPKDVIANKIKRC 311 (359)
Q Consensus 259 ~~~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~~s~I------~L~D~p~~I~kKI~rA 311 (359)
++.|...+. +.+.+. +| +|+||++.. ..| .--++|+.+-.-+++.
T Consensus 225 -~~~P~~~H~---pl~l~~-~g-~kLSKR~~~--~~i~~~~~r~~g~~~~~~l~~L~~l 275 (314)
T PF00749_consen 225 -WPPPPYAHL---PLILNE-DG-KKLSKRKGA--KSIELGDYREWGDPPEATLNYLARL 275 (314)
T ss_dssp -SSS-EEEEE---EEEEET-TS-SBSSTTCSH--HBHHHHHHHHTT-THHHHHHHHHHT
T ss_pred -CCCcceEee---eeeecC-CC-cEechhhcc--ccccccccccCCCCHHHHHHHHHHh
Confidence 344766665 345565 56 799999742 232 2235676666666553
No 45
>PTZ00402 glutamyl-tRNA synthetase; Provisional
Probab=97.97 E-value=8.5e-05 Score=78.88 Aligned_cols=178 Identities=15% Similarity=0.143 Sum_probs=109.4
Q ss_pred eEEEee--CCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEeccceecCCCCHHHHHHHHHHHHHHHHHcCcCCCccEEEE
Q 018259 80 RIVSGV--QPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFV 156 (359)
Q Consensus 80 ~i~sGi--~PTG~lHLGnyig~i~~~~~lQ~-~~~~~i~IADlhA~t~~~~~~~l~~~~~~~~~~~lA~GlDp~kt~i~~ 156 (359)
.+.+=| .|||.+||||...++.+|...+. +..+++-|=|. ++. ....+....+..++..+||+++. .++.
T Consensus 52 ~v~tRFAPsPtGyLHIGharaAllN~l~Ar~~gG~~iLRiEDT----Dp~--R~~~e~~d~IleDL~WLGl~wDe-~~~~ 124 (601)
T PTZ00402 52 KVVTRFPPEASGFLHIGHAKAALINSMLADKYKGKLVFRFDDT----NPS--KEKEHFEQAILDDLATLGVSWDV-GPTY 124 (601)
T ss_pred eeEEeeCCCCCCcccHHHHHHHHHHHHHHHHhCCEEEEEEcCC----CCc--ccCHHHHHHHHHHHHHCCCCCCC-ceee
Confidence 355555 67799999999999999976665 56677777776 211 23456777888999999999985 3788
Q ss_pred ccCcchhh-HHHH-H------HhccCCHHHHhchh------hHHHH-----H---hh--hCC--C--------------C
Q 018259 157 QSHVRAHV-ELMW-L------LSSATPIGWLNKMI------QFKEK-----S---HK--AGG--E--------------N 196 (359)
Q Consensus 157 qS~~~~~~-eL~w-~------L~~~~~i~~L~r~~------~~k~~-----~---~~--~~~--~--------------~ 196 (359)
||+..+.- +..- + +.|.++-.+++... .+.+. . +. .+. + +
T Consensus 125 QSdr~d~y~e~a~~Li~~G~AY~c~cs~eei~~~r~~g~p~~~R~~s~ee~l~~~~~m~~g~~~~~~~~lR~kid~~~~n 204 (601)
T PTZ00402 125 SSDYMDLMYEKAEELIKKGLAYCDKTPREEMQKCRFDGVPTKYRDISVEETKRLWNEMKKGSAEGQETCLRAKISVDNEN 204 (601)
T ss_pred ccccHHHHHHHHHHHHHcCCEEEecCCHHHHHHHHhCCCCCCCCCCCHHHHHHHHHhccccccCCCceEEEEecccCCCC
Confidence 99965432 2111 1 35677766664321 01100 0 00 000 0 0
Q ss_pred ccccc------------------chhhHHHhhhhh---hcccceeecccchHHHHHHHHHHHHHhhhhhCCccccccCCC
Q 018259 197 VGVAL------------------LTYPVLMASDIL---LYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGR 255 (359)
Q Consensus 197 ~~~g~------------------l~YPvLQAADIl---~~~adivpvG~DQ~~hieLaRdia~k~n~~~g~~~~~~~~~~ 255 (359)
.+++. -.||..+=|-.+ ..+.++|.-|.|...+-..-.-|.+.++
T Consensus 205 ~~~rD~Vl~R~~~~~h~rtGdk~dgyPtYdfA~vVDD~l~gITHvlRg~E~l~~tp~q~~L~~aLg-------------- 270 (601)
T PTZ00402 205 KAMRDPVIYRVNLTPHARQGTKYKAYPTYDFCCPIIDSVEGVTHALRTNEYHDRNDQYYWFCDALG-------------- 270 (601)
T ss_pred CCccCCEEEEEcCCcccccCCCCceeeccCcceeeEccccCCceEeechhhhhCcHHHHHHHHHhC--------------
Confidence 00000 134444433332 2478999999999988888888888775
Q ss_pred CCccccCCceecCCCCcccccCCCCCCcCCCCC
Q 018259 256 GGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSA 288 (359)
Q Consensus 256 ~~~~~~~P~~l~~~~~~~l~sL~dg~~KMSKS~ 288 (359)
++.|...+. ++ .++ +| .||||+.
T Consensus 271 ----~~~P~~~h~---~r-Ln~-~g-~kLSKRk 293 (601)
T PTZ00402 271 ----IRKPIVEDF---SR-LNM-EY-SVMSKRK 293 (601)
T ss_pred ----CCCceEEEE---ee-EcC-CC-CcccccC
Confidence 345766655 43 365 66 6999996
No 46
>PLN02907 glutamate-tRNA ligase
Probab=97.96 E-value=8.1e-05 Score=80.97 Aligned_cols=177 Identities=15% Similarity=0.125 Sum_probs=106.7
Q ss_pred eEEEee--CCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEeccceecCCCCHHHHHHHHHHHHHHHHHcCcCCCccEEEE
Q 018259 80 RIVSGV--QPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFV 156 (359)
Q Consensus 80 ~i~sGi--~PTG~lHLGnyig~i~~~~~lQ~-~~~~~i~IADlhA~t~~~~~~~l~~~~~~~~~~~lA~GlDp~kt~i~~ 156 (359)
.|.+=| +|||.+||||...++.+|...+. +.++++-+=|.-. . ....+....+..++..+|+++++ ++.
T Consensus 213 ~v~tRFaPsPtG~LHiG~ar~al~n~~~Ar~~~G~~iLR~eDTdp----~--r~~~e~~~~I~~dl~wLG~~~d~--~~~ 284 (722)
T PLN02907 213 KVCTRFPPEPSGYLHIGHAKAALLNQYFARRYKGKLIVRFDDTNP----S--KESDEFVENILKDIETLGIKYDA--VTY 284 (722)
T ss_pred ceEEeeCCCCCCcccHHHHHHHHHHHHHHHHhCCEEEEEecCCCC----C--cCChHHHHHHHHHHHHcCCCCCC--ccc
Confidence 466666 67799999999999999866554 5666777777522 1 23346667788888899999985 689
Q ss_pred ccCcchhh-HHHH-H------HhccCCHHHHhchh-----------h-------HHHHHh-hh-C------------CCC
Q 018259 157 QSHVRAHV-ELMW-L------LSSATPIGWLNKMI-----------Q-------FKEKSH-KA-G------------GEN 196 (359)
Q Consensus 157 qS~~~~~~-eL~w-~------L~~~~~i~~L~r~~-----------~-------~k~~~~-~~-~------------~~~ 196 (359)
||+..+.- +.+- + +.|.++..+++... + |.++.. .. + ..+
T Consensus 285 qS~r~~~y~~~a~~Li~~G~aY~~~~~~~~~~~~~~~~~~~~~R~~~~ee~~~~~~~m~~g~~~~~~~~lR~k~d~~~~n 364 (722)
T PLN02907 285 TSDYFPQLMEMAEKLIKEGKAYVDDTPREQMRKERMDGIESKCRNNSVEENLRLWKEMIAGSERGLQCCVRGKLDMQDPN 364 (722)
T ss_pred ccccHHHHHHHHHHHHHcCCeeecCCCHHHHHHHHhcCCCCCccCCCHHHHHHHHHHHhcccccCCCeEEEEEcccCCCC
Confidence 99975432 2111 1 34667766654221 1 111100 00 0 001
Q ss_pred cccccc------------------hhhHHHhhhhhh---cccceeecccchHHHHHHHHHHHHHhhhhhCCccccccCCC
Q 018259 197 VGVALL------------------TYPVLMASDILL---YQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGR 255 (359)
Q Consensus 197 ~~~g~l------------------~YPvLQAADIl~---~~adivpvG~DQ~~hieLaRdia~k~n~~~g~~~~~~~~~~ 255 (359)
.++... .||..+=|-.+- .+.++|.-|.|...+-..-.-+.+.++
T Consensus 365 ~~~~D~v~~R~~~~~h~~~gd~~~~~PtY~fa~~vdD~~~gIThvlRg~e~~~~t~~q~~l~~~lg-------------- 430 (722)
T PLN02907 365 KSLRDPVYYRCNPTPHHRIGSKYKVYPTYDFACPFVDALEGVTHALRSSEYHDRNAQYYRILEDMG-------------- 430 (722)
T ss_pred CCcccCEEEEecCCcccccCCccceeeccCCceEEEcccCCCceEeecHhhhhChHHHHHHHHHcC--------------
Confidence 111111 156555444433 579999999999998888777877775
Q ss_pred CCccccCCceecCCCCcccccCCCCCCcCCCCC
Q 018259 256 GGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSA 288 (359)
Q Consensus 256 ~~~~~~~P~~l~~~~~~~l~sL~dg~~KMSKS~ 288 (359)
++.|..... +++ ++ ++ .||||+.
T Consensus 431 ----~~~p~~~~f---~~l-~~-~~-~~lSKR~ 453 (722)
T PLN02907 431 ----LRKVHIWEF---SRL-NF-VY-TLLSKRK 453 (722)
T ss_pred ----CCCCeeEEE---EEE-cC-CC-ccccccc
Confidence 334532222 333 55 55 5999996
No 47
>PRK12558 glutamyl-tRNA synthetase; Provisional
Probab=97.94 E-value=1.7e-05 Score=81.69 Aligned_cols=192 Identities=21% Similarity=0.188 Sum_probs=114.7
Q ss_pred eCCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEeccceecCCCCHHHHHHHHHHHHHHHHHcCcCCCccEEEEccCcchh
Q 018259 85 VQPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQSHVRAH 163 (359)
Q Consensus 85 i~PTG~lHLGnyig~i~~~~~lQ~-~~~~~i~IADlhA~t~~~~~~~l~~~~~~~~~~~lA~GlDp~kt~i~~qS~~~~~ 163 (359)
=.|||.+||||...++.+|...+. +.+.++-|-|.-. .....+....+..++..+|+++|. .|.||+..+.
T Consensus 9 PSPTG~lHiG~artAL~n~l~Ar~~gG~fiLRIEDTD~------~Rs~~~~~~~I~e~L~wLGI~~De--~y~QSer~~~ 80 (445)
T PRK12558 9 PSPTGYLHVGNARTALLNWLYARKHGGKFILRIDDTDL------ERSKQEYADAIAEDLKWLGINWDR--TFRQSDRFDR 80 (445)
T ss_pred CCCCCcccHHHHHHHHHHHHHHHHhCCEEEEEeccCCc------ccchHHHHHHHHHHHHHcCCCCCc--cccHHHHHHH
Confidence 367899999999999999977655 6667777887632 122345566777888899999994 7999986432
Q ss_pred -hHHH-------HHHhccCCHHHHhchhh----------HH---------HHHhhh--C----------CCC-----ccc
Q 018259 164 -VELM-------WLLSSATPIGWLNKMIQ----------FK---------EKSHKA--G----------GEN-----VGV 199 (359)
Q Consensus 164 -~eL~-------w~L~~~~~i~~L~r~~~----------~k---------~~~~~~--~----------~~~-----~~~ 199 (359)
.+.. ..+-|.+|-.+|+.+.. |. +..+.. + ++. .--
T Consensus 81 y~~~~e~L~e~G~AY~C~Ct~eel~~~r~~~~~~~~~~~y~~~cr~l~~~~~~~~~~~g~~~~iR~k~~~~~~~~~D~i~ 160 (445)
T PRK12558 81 YDEAAEKLKAAGRLYPCYETPEELELKRKIQLSRGLPPIYDRAALKLTEEEKAALEAEGRKPHWRFKLDDEPISWDDLIR 160 (445)
T ss_pred HHHHHHHHHHCCCEEEecCchHHHHHHHHHHHhCCCCCCCCcccccCCHHHHHhHHhcCCCceEEEecCCCceEEEEEee
Confidence 1111 11447788777754321 10 000000 0 000 001
Q ss_pred ccchhhHHHhhhhhh-------------------cccceeecccchHHHHHHHHHHHHHhhhhhCCccccccCCCCCccc
Q 018259 200 ALLTYPVLMASDILL-------------------YQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIF 260 (359)
Q Consensus 200 g~l~YPvLQAADIl~-------------------~~adivpvG~DQ~~hieLaRdia~k~n~~~g~~~~~~~~~~~~~~~ 260 (359)
|.+.++.-.--|.+. .+.++|.=|.|...+--.=.-|.+-|+ +
T Consensus 161 G~~~~~~~~~~D~Vi~R~dg~PtY~fA~vVDD~~m~ITHViRG~d~l~~t~~q~~l~~alg------------------~ 222 (445)
T PRK12558 161 GEQSIDAASLSDPVLIRADGSYLYTLPSVVDDIDMGITHIIRGEDHVTNTAVQIQIFEALG------------------A 222 (445)
T ss_pred eEeecccccCCCeEEEecCCCccccccceeccccCCCCEEEechhhhhCCHHHHHHHHHhC------------------C
Confidence 333322212223332 258889999998776655555555554 4
Q ss_pred cCCceecCCCCcccccCCCCCCcCCCCCCCCCCeeecCC------CHHHHHHHhhhc
Q 018259 261 KVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLD------PKDVIANKIKRC 311 (359)
Q Consensus 261 ~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~~s~I~L~D------~p~~I~kKI~rA 311 (359)
+.|+..+. ++|.+- || +|+||.+. ...+.+ .|+.|.+-+...
T Consensus 223 ~~P~f~H~---pli~~~-~g-~KLSKR~g----~~sv~~~r~~G~~Peai~n~la~l 270 (445)
T PRK12558 223 KPPVFAHL---SLLTGA-DG-KGLSKRLG----GLSIRSLREDGIEPMAIASLLARL 270 (445)
T ss_pred CCCeEEEc---ccccCC-Cc-ccccccCC----CcCHHHHHHCCCCHHHHHHHHHHH
Confidence 56877776 447664 66 79999973 333332 677777777653
No 48
>TIGR00467 lysS_arch lysyl-tRNA synthetase, archaeal and spirochete. This model represents the lysyl-tRNA synthetases that are class I amino-acyl tRNA synthetases. It includes archaeal and spirochete examples of the enzyme. All other known examples are class IIc amino-acyl tRNA synthetases and seem to form a separate orthologous set.
Probab=97.93 E-value=4.9e-05 Score=79.71 Aligned_cols=81 Identities=21% Similarity=0.253 Sum_probs=53.3
Q ss_pred CceEEEeeCCCCcchhhhHHHHHH--HHHHHhc--cCcE-EEEEeccc--------------------eecCCCCH----
Q 018259 78 KKRIVSGVQPTGSIHLGNYLGAIK--NWIALQN--SYET-LFFIVDLH--------------------AITLPYDT---- 128 (359)
Q Consensus 78 ~~~i~sGi~PTG~lHLGnyig~i~--~~~~lQ~--~~~~-~i~IADlh--------------------A~t~~~~~---- 128 (359)
+..|-||+-|||.+||||....+. -+.+..+ |.++ +|+.+|.| .++.-.+|
T Consensus 19 ~~~~~tg~~psG~~HiG~~~e~~~~d~v~r~~r~~g~~~~~i~~~Dd~D~lRKvp~~~p~~~~~ylG~Pl~~vpdp~g~~ 98 (515)
T TIGR00467 19 LYTVASGITPSGHIHIGNFREVITADAIARALRDSGSEARFIYIADNYDPLRKVYPFLPEELETYLGMPLTRIPDPEGCK 98 (515)
T ss_pred eEEEecCCCCCCCccccchhhhhHHHHHHHHHHHcCCCEEEEEEEcCCcccccccccccHHHHHhCCCcceecCCCCCCc
Confidence 578999999999999999887663 2444433 6776 68899999 22221122
Q ss_pred -HHHHHHHHHHHHHHHHcCcCCCccEEEEccCcc
Q 018259 129 -QQLSKATRETAAIYLACGIDNSKASVFVQSHVR 161 (359)
Q Consensus 129 -~~l~~~~~~~~~~~lA~GlDp~kt~i~~qS~~~ 161 (359)
.-...+-....+.+-.+||+ .+|+.+++.+
T Consensus 99 ~s~~~h~~~~~~~~l~~~gi~---~e~~s~te~Y 129 (515)
T TIGR00467 99 TSYAEHFLIPFLESLPVLGIN---PEFIRASKQY 129 (515)
T ss_pred HHHHHHHHHHHHHHHHHcCCe---EEEEEHHHhh
Confidence 22223334455566668996 5688888864
No 49
>PLN02627 glutamyl-tRNA synthetase
Probab=97.74 E-value=0.0005 Score=72.33 Aligned_cols=198 Identities=17% Similarity=0.131 Sum_probs=117.1
Q ss_pred eEEEeeCCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEeccceecCCCCHHHHHHHHHHHHHHHHHcCcCCCccE-----
Q 018259 80 RIVSGVQPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKAS----- 153 (359)
Q Consensus 80 ~i~sGi~PTG~lHLGnyig~i~~~~~lQ~-~~~~~i~IADlhA~t~~~~~~~l~~~~~~~~~~~lA~GlDp~kt~----- 153 (359)
++=..=.|||.+||||...++.+|...+. +.+.++-|-|.-. .....+....+..++..+||+++...
T Consensus 47 r~RFAPSPTG~LHiG~aRtAL~n~l~Ar~~gG~fiLRIEDTD~------~R~~~e~~~~I~~~L~WLGl~wDegp~~gg~ 120 (535)
T PLN02627 47 RVRFAPSPTGNLHVGGARTALFNYLFARSKGGKFVLRIEDTDL------ARSTKESEEAVLRDLKWLGLDWDEGPDVGGE 120 (535)
T ss_pred EEEeCCCCCCCccHHHHHHHHHHHHHHHHhCCEEEEEeCcCCC------CCCChHHHHHHHHHHHHcCCCCCcCcccCCC
Confidence 44344467899999999999999987765 6677777877632 12244566778888889999999642
Q ss_pred --EEEccCcchh-hHHH-------HHHhccCCHHHHhchhhHHH-------------------HHhh--hCC--------
Q 018259 154 --VFVQSHVRAH-VELM-------WLLSSATPIGWLNKMIQFKE-------------------KSHK--AGG-------- 194 (359)
Q Consensus 154 --i~~qS~~~~~-~eL~-------w~L~~~~~i~~L~r~~~~k~-------------------~~~~--~~~-------- 194 (359)
.|+||+-.+. .+.. ..+-|.++-.+|+.+..-.. ..+. .+.
T Consensus 121 ~gpy~QSeR~~~Y~~~a~~Li~~G~AY~CfCs~eel~~~r~~~~~~~~~~~Yd~~cr~l~~ee~~~~~~~g~~~~iR~k~ 200 (535)
T PLN02627 121 YGPYRQSERNAIYKQYAEKLLESGHVYPCFCTDEELEAMKEEAELKKLPPRYTGKWATASDEEVQAELAKGTPYTYRFRV 200 (535)
T ss_pred CCCeeeeccHHHHHHHHHHHHHcCCeeeccCChHHHHHHHHHHHhcCCCcCCCCccccCCHHHHHHHHhCCCCceEEEEc
Confidence 5999985432 1111 11457788777754321100 0000 000
Q ss_pred ---CCc-----ccccch----------------hhHHHhhhh---hhcccceeecccchHHHHHHHHHHHHHhhhhhCCc
Q 018259 195 ---ENV-----GVALLT----------------YPVLMASDI---LLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGR 247 (359)
Q Consensus 195 ---~~~-----~~g~l~----------------YPvLQAADI---l~~~adivpvG~DQ~~hieLaRdia~k~n~~~g~~ 247 (359)
+.+ --|.+. ||..+=|-+ ...+.++|.=|.|...+--.=..|.+-|+
T Consensus 201 p~~~~~~~~D~i~G~i~~~~~~~~D~Vi~R~DG~PtY~fA~vVDD~~mgITHViRG~D~l~nTpkQi~ly~aLg------ 274 (535)
T PLN02627 201 PKEGSVKIDDLIRGEVSWNTDTLGDFVLLRSNGQPVYNFCVAVDDATMGITHVIRAEEHLPNTLRQALIYKALG------ 274 (535)
T ss_pred CCCCceEEEeeeeeeeeeccccCCCeEEEecCCCccccccceecccccCCcEEEechhhhcChHHHHHHHHHcC------
Confidence 000 012222 222222211 12368899999998776555555556554
Q ss_pred cccccCCCCCccccCCceecCCCCcccccCCCCCCcCCCCCCCCCCeeecCC------CHHHHHHHhhh
Q 018259 248 KWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLD------PKDVIANKIKR 310 (359)
Q Consensus 248 ~~~~~~~~~~~~~~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~~s~I~L~D------~p~~I~kKI~r 310 (359)
++.|...+. +.|.+- || +||||.+. .+.+.+ .|+.|.+-+..
T Consensus 275 ------------~~~P~f~Hl---pli~~~-~g-~KLSKR~~----~~~v~~~r~~G~~PeAi~nyla~ 322 (535)
T PLN02627 275 ------------FPMPRFAHV---SLILAP-DR-SKLSKRHG----ATSVGQFREMGYLPDAMVNYLAL 322 (535)
T ss_pred ------------CCCCeEEEc---cceeCC-CC-CccccccC----CccHHHHHHCCCCHHHHHHHHHH
Confidence 456877666 447664 66 79999973 444432 67777776654
No 50
>cd00671 ArgRS_core catalytic core domain of arginyl-tRNA synthetases. Arginyl tRNA synthetase (ArgRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. There are at least three subgroups of ArgRS. One type contains both characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. The second subtype lacks the KMSKS motif; however, it has a lysine N-terminal to the HIGH motif, which serves as the functional counterpart to the second lysine of the KMSKS motif. A third group, which is found primarily in archaea and a few bacteria, lacks both the KMSKS motif and the HIGH loop lysine.
Probab=97.72 E-value=0.00013 Score=67.60 Aligned_cols=154 Identities=18% Similarity=0.188 Sum_probs=79.6
Q ss_pred EEeeCCCCcchhhhHHHHH--HHHHHHhc--cCcEEE-EEecccee-cCC-----CCHHHHH-HHHHHHHHHHHHcCcCC
Q 018259 82 VSGVQPTGSIHLGNYLGAI--KNWIALQN--SYETLF-FIVDLHAI-TLP-----YDTQQLS-KATRETAAIYLACGIDN 149 (359)
Q Consensus 82 ~sGi~PTG~lHLGnyig~i--~~~~~lQ~--~~~~~i-~IADlhA~-t~~-----~~~~~l~-~~~~~~~~~~lA~GlDp 149 (359)
|++--|+|.+||||..+.+ .-+.++.+ |++|+. ...|.|.. +.. ..+.++. .....+.+++.++|+.+
T Consensus 6 ~~spN~~~~~HiGH~R~~vigD~l~R~l~~~G~~V~~~~~~~D~G~qi~~~a~~~~~~~~~~~~~~~~~~~~~~~L~i~~ 85 (212)
T cd00671 6 FVSANPTGPLHVGHLRNAIIGDSLARILEFLGYDVTREYYINDWGRQIGLLILSLEKWRKLVEESIKADLETYGRLDVRF 85 (212)
T ss_pred ecCCCCCCCccccccHHHHHHHHHHHHHHHCCCcEEEEeccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcC
Confidence 5666789999999988755 22444443 788753 34433322 210 1133333 33456778888999987
Q ss_pred CccEEEEccCcchhhHHHHH-Hh-c-cCC--HHHH-hchhhHHHHHhhhCCCCc---ccccchhhH---HHhhhhhhccc
Q 018259 150 SKASVFVQSHVRAHVELMWL-LS-S-ATP--IGWL-NKMIQFKEKSHKAGGENV---GVALLTYPV---LMASDILLYQS 217 (359)
Q Consensus 150 ~kt~i~~qS~~~~~~eL~w~-L~-~-~~~--i~~L-~r~~~~k~~~~~~~~~~~---~~g~l~YPv---LQAADIl~~~a 217 (359)
+ .++..|+........|. |- . ... -+.+ -....|++ ..+-+ +=|..+|.. -.+.|=+.+++
T Consensus 86 d--~~~~es~~~~~~~~~i~~L~~~g~~~~~~g~~~~~~~~~~~-----~~d~vl~rsdG~~~Y~~~DlA~~~~~~~~~~ 158 (212)
T cd00671 86 D--VWFGESSYLGLMGKVVELLEELGLLYEEDGALWLDLTEFGD-----DKDRVLVRSDGTYTYFTRDIAYHLDKFERGA 158 (212)
T ss_pred c--eecchhhhhhHHHHHHHHHHHCCCEEEeCCcEEEechhhCC-----CCCeEEEECCCCccchHHHHHHHHHHHhcCC
Confidence 5 24455554222122221 11 0 000 0000 00000000 00000 124455542 22222233578
Q ss_pred cee--ecccchHHHHHHHHHHHHHhhh
Q 018259 218 DFV--PVGEDQKQHLELTRELAERVNY 242 (359)
Q Consensus 218 div--pvG~DQ~~hieLaRdia~k~n~ 242 (359)
|.+ .+|.||..|+.-.+.+++.++.
T Consensus 159 ~~~i~v~g~~~~~~~~~~~~~~~~lg~ 185 (212)
T cd00671 159 DKIIYVVGADHHGHFKRLFAALELLGY 185 (212)
T ss_pred CEEEEEECCCHHHHHHHHHHHHHHcCC
Confidence 888 9999999999999999999873
No 51
>PLN02859 glutamine-tRNA ligase
Probab=97.71 E-value=0.00012 Score=79.71 Aligned_cols=177 Identities=12% Similarity=0.079 Sum_probs=107.9
Q ss_pred eEEEee--CCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEeccceecCCCCHHHHHHHHHHHHHHHHHcCcCCCccEEEE
Q 018259 80 RIVSGV--QPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFV 156 (359)
Q Consensus 80 ~i~sGi--~PTG~lHLGnyig~i~~~~~lQ~-~~~~~i~IADlhA~t~~~~~~~l~~~~~~~~~~~lA~GlDp~kt~i~~ 156 (359)
.|.+=| +|||.+||||...++.+|...+. +..+++-+=|. ++. ....+....+..++..+|++|++ ++.
T Consensus 264 ~V~tRFaPsPtG~LHiGharaallN~~~Ar~~~G~~~LRieDT----dp~--r~~~e~~~~I~edL~WLG~~~d~--~~~ 335 (788)
T PLN02859 264 KVYTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGCCYLRFDDT----NPE--AEKKEYIDHIEEIVEWMGWEPFK--ITY 335 (788)
T ss_pred ceEEEeCCCCCCcccHHHHHHHHHHHHHHHHhCCEEEEEecCC----CCC--ccchHHHHHHHHHHHHcCCCCCC--ccc
Confidence 355555 67899999999999989876655 55666667665 211 23446677788888899999985 789
Q ss_pred ccCcch-hhHHHHH-------HhccCCHHHHhchhh------------------HHHHHhh-hC-------------CCC
Q 018259 157 QSHVRA-HVELMWL-------LSSATPIGWLNKMIQ------------------FKEKSHK-AG-------------GEN 196 (359)
Q Consensus 157 qS~~~~-~~eL~w~-------L~~~~~i~~L~r~~~------------------~k~~~~~-~~-------------~~~ 196 (359)
||++.+ +-+.+-. +.|.++-.+|+.... |.++..- .. ..+
T Consensus 336 qSd~f~~~Y~~A~~Li~~G~AY~C~ct~eei~~~R~~~~~sp~Rd~s~eenl~lfe~m~~g~~~~G~~vlR~Kid~~~~n 415 (788)
T PLN02859 336 TSDYFQELYELAVELIRRGHAYVDHQTPEEIKEYREKKMNSPWRDRPIEESLKLFEDMRRGLIEEGKATLRMKQDMQNDN 415 (788)
T ss_pred ccHhHHHHHHHHHHHHHcCCeEeccCCHHHHHHHHhhhccCCCCCCChHHhhhhhHHHHhchhccCCeEEEEeccCCCCC
Confidence 998763 3332211 347777766542211 1111100 00 000
Q ss_pred cc-----cc-------------cchhhHHHhhhhhh---cccceeecccchHHHHHHHHHHHHHhhhhhCCccccccCCC
Q 018259 197 VG-----VA-------------LLTYPVLMASDILL---YQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGR 255 (359)
Q Consensus 197 ~~-----~g-------------~l~YPvLQAADIl~---~~adivpvG~DQ~~hieLaRdia~k~n~~~g~~~~~~~~~~ 255 (359)
.+ .+ -.+||..-=|-.+. .+.+++..|.|...+-..-.-+.+.|+
T Consensus 416 ~~~rD~V~~RI~~~~h~rtgdk~~iyPtYdFA~~vdD~legITHvLRg~E~~~~~~~y~wl~~aLg-------------- 481 (788)
T PLN02859 416 FNMYDLIAYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSLENITHSLCTLEFETRRASYYWLLDSLG-------------- 481 (788)
T ss_pred ceeeeceeEEEeccCCCccCCCeEEEecccccccccccccCCceEeechhhhcCCHHHHHHHHHcC--------------
Confidence 00 01 12355544433332 479999999998888777777777765
Q ss_pred CCccccCCceecCCCCcccccCCCCCCcCCCCC
Q 018259 256 GGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSA 288 (359)
Q Consensus 256 ~~~~~~~P~~l~~~~~~~l~sL~dg~~KMSKS~ 288 (359)
+..|..... + ..++ +| .||||+.
T Consensus 482 ----~~~P~~~~f---~-rLn~-~~-t~LSKRk 504 (788)
T PLN02859 482 ----LYQPYVWEY---S-RLNV-TN-TVMSKRK 504 (788)
T ss_pred ----CCCCcEEee---e-eECC-CC-CcccCcC
Confidence 335765554 4 3466 66 6999997
No 52
>COG1384 LysS Lysyl-tRNA synthetase (class I) [Translation, ribosomal structure and biogenesis]
Probab=97.66 E-value=4.3e-05 Score=79.25 Aligned_cols=82 Identities=22% Similarity=0.351 Sum_probs=52.2
Q ss_pred CCceEEEeeCCCCcchhhhHHHHHH---HHHHHhc-cCcE-EEEEeccceecC--CC---CHHHHHHH------------
Q 018259 77 VKKRIVSGVQPTGSIHLGNYLGAIK---NWIALQN-SYET-LFFIVDLHAITL--PY---DTQQLSKA------------ 134 (359)
Q Consensus 77 ~~~~i~sGi~PTG~lHLGnyig~i~---~~~~lQ~-~~~~-~i~IADlhA~t~--~~---~~~~l~~~------------ 134 (359)
...+|-||+-|||.+||||+-=.+. -...|.+ |+++ +|+++|.+-=+. |. +++.+.++
T Consensus 19 ~~~~v~tGisPSG~~HIGn~rEv~t~d~V~ralr~~g~~~r~I~~~DD~D~lRkvp~~lp~~~~~e~Ylg~Plt~IPdP~ 98 (521)
T COG1384 19 DEYVVATGISPSGLIHIGNFREVLTADAVRRALRDRGDEVRLIYISDDYDPLRKVPRNLPDPEELEQYLGMPLTEIPDPF 98 (521)
T ss_pred CcEEEecCcCCCCCcccccHHHHHHHHHHHHHHHHcCCceEEEEEccCCcccccCCCCCCChHHHHHHcCCccccCCCCc
Confidence 4578999999999999999764332 1223433 6776 688888876653 22 33444443
Q ss_pred ------HHHH----HHHHHHcCcCCCccEEEEccCcc
Q 018259 135 ------TRET----AAIYLACGIDNSKASVFVQSHVR 161 (359)
Q Consensus 135 ------~~~~----~~~~lA~GlDp~kt~i~~qS~~~ 161 (359)
++.+ .+.+--+|+++ +++.+|+.+
T Consensus 99 G~~~Sya~hf~~~f~~~l~~~Gi~~---E~~s~se~Y 132 (521)
T COG1384 99 GCCDSYAEHFLRPFEEFLDEFGIEV---EFVSATELY 132 (521)
T ss_pred cccchHHHHHHHHHHHHHHhcCCce---EEEEhHHhh
Confidence 2333 33444568874 688888864
No 53
>PF01921 tRNA-synt_1f: tRNA synthetases class I (K); InterPro: IPR002904 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Lysyl-tRNA synthetase (6.1.1.6 from EC) is an alpha 2 homodimer that belong to both class I and class II. In eubacteria and eukaryota lysyl-tRNA synthetases belong to class II in the same family as aspartyl tRNA synthetase. The class Ic lysyl-tRNA synthetase family is present in archaea and in a number of bacterial groups that include the alphaproteobacteria and spirochaetes[]. A refined crystal structures shows that the active site of LysU is shaped to position the substrates for the nucleophilic attack of the lysine carboxylate on the ATP alpha-phosphate. No residues are directly involved in catalysis, but a number of highly conserved amino acids and three metal ions coordinate the substrates and stabilise the pentavalent transition state. A loop close to the catalytic pocket, disordered in the lysine-bound structure, becomes ordered upon adenine binding [].; GO: 0000166 nucleotide binding, 0004824 lysine-tRNA ligase activity, 0005524 ATP binding, 0006430 lysyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IRX_A.
Probab=97.64 E-value=0.00017 Score=72.49 Aligned_cols=81 Identities=23% Similarity=0.411 Sum_probs=38.1
Q ss_pred cccceeecccchHH---HHHHHHHHHHHhhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCcCCCCCCCC
Q 018259 215 YQSDFVPVGEDQKQ---HLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSD 291 (359)
Q Consensus 215 ~~adivpvG~DQ~~---hieLaRdia~k~n~~~g~~~~~~~~~~~~~~~~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~ 291 (359)
++.|+.|.|.|+.. -...+.+||+++ || .+.|..+.-.. -.+ +|.+|||||.
T Consensus 233 lgVdfEp~GKDH~~~GGS~d~~~~I~~~i---~g--------------~~pP~~~~YE~----~~~-~g~~kmSsSk--- 287 (360)
T PF01921_consen 233 LGVDFEPFGKDHASPGGSYDTSKRIAREI---LG--------------YEPPVPFPYEF----FLD-KGGGKMSSSK--- 287 (360)
T ss_dssp TT-SEEEEEHHHHCTTSHHHHHHHHHHHC---C-------------------EEEEE------EEE-S------------
T ss_pred cCceeccCCCccCCCCCChhhHHHHHHHH---hC--------------CCCCCCCCeeE----EEe-CCCcccccCC---
Confidence 47999999999999 999999999654 33 23465444322 233 4546999997
Q ss_pred CCeeecCC-----CHHHHHHHhhhccCCCCCCcccC
Q 018259 292 QSRINLLD-----PKDVIANKIKRCKTDSSAGLEFD 322 (359)
Q Consensus 292 ~s~I~L~D-----~p~~I~kKI~rA~Td~~~~i~~~ 322 (359)
++.|.+.| +|+.++--+-+ |.+......+
T Consensus 288 G~~~t~~e~L~~~~PE~lr~l~~~--~~P~~~~~~~ 321 (360)
T PF01921_consen 288 GNGITPEEWLEYAPPESLRYLMAR--TKPNKAKDFS 321 (360)
T ss_dssp -----HHHHHTTS-HHHHHHHHHC--S-TTS-EEE-
T ss_pred CCccCHHHHHHhcCHHHHHHHHcc--cCCCcceEec
Confidence 67888776 78877755544 3444444444
No 54
>PRK01611 argS arginyl-tRNA synthetase; Reviewed
Probab=97.62 E-value=0.00023 Score=74.34 Aligned_cols=192 Identities=17% Similarity=0.179 Sum_probs=101.0
Q ss_pred eEEEeeCCCCcchhhhHHHHHH--HHHHHhc--cCcEE--EEEeccceecCC------CCHHHHH-HHHHHHHHHHHHcC
Q 018259 80 RIVSGVQPTGSIHLGNYLGAIK--NWIALQN--SYETL--FFIVDLHAITLP------YDTQQLS-KATRETAAIYLACG 146 (359)
Q Consensus 80 ~i~sGi~PTG~lHLGnyig~i~--~~~~lQ~--~~~~~--i~IADlhA~t~~------~~~~~l~-~~~~~~~~~~lA~G 146 (359)
.-++|--|+|.+|+||..+++. -+.++.+ |++|. ..+.|+-..+.. ..++.+. .....+.++|..+|
T Consensus 115 Ie~~spnp~g~lHiGH~R~~iigD~laR~lr~~G~~V~~~~~i~D~G~qi~~~a~~~~~~~~~~~~~~~~~~~~~l~~Lg 194 (507)
T PRK01611 115 VEYVSANPTGPLHVGHLRSAVIGDALARILEFAGYDVTREYYVNDAGTQIGMLIASLELLWRKAVDISLDEIKEDLDRLG 194 (507)
T ss_pred EEecCCCCCCCCcCCchHHHHHHHHHHHHHHHcCCcEEEEeeeCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 3455889999999999887662 3445543 78874 356776433320 1233333 34467778888999
Q ss_pred cCCCccEEEEccCcchhhHHHHHHhccCCHHHHhch-hhH-HHH------HhhhCCC-Cc----ccccchhhHHHhhhhh
Q 018259 147 IDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKM-IQF-KEK------SHKAGGE-NV----GVALLTYPVLMASDIL 213 (359)
Q Consensus 147 lDp~kt~i~~qS~~~~~~eL~w~L~~~~~i~~L~r~-~~~-k~~------~~~~~~~-~~----~~g~l~YPvLQAADIl 213 (359)
+.++ .+++.|+........+++. +|... ..| ... ....+++ +. +=|..+|. +.||=
T Consensus 195 I~~D--~~~~es~~~~~~~~~~~~~------~L~~~G~~y~~~~Ga~~~~~~~~~~~~~~vl~ksdG~~~Y~---t~Dia 263 (507)
T PRK01611 195 VHFD--VWFSESELYYNGKVDEVVE------DLKEKGLLYVESDGALWVRLTEFGDDKDRVLIKSDGTYTYF---TRDIA 263 (507)
T ss_pred Ceee--EEeecCcchhcchHHHHHH------HHHHCCCEEEeeCCcEEEEchhhCCCCCeEEEECCCCccch---HHHHH
Confidence 9875 3445554321111111111 11110 001 000 0011100 00 12444553 33553
Q ss_pred hc-------ccceeecccchHHHHHHHHHHHHHhhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCcCCC
Q 018259 214 LY-------QSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSK 286 (359)
Q Consensus 214 ~~-------~adivpvG~DQ~~hieLaRdia~k~n~~~g~~~~~~~~~~~~~~~~~P~~l~~~~~~~l~sL~dg~~KMSK 286 (359)
+. +--+-.+|.||..|+.-...+++.++.... ..-..++... .++-+ .+| +||||
T Consensus 264 ~~~~k~~~~d~~i~V~g~~q~~hf~~~~~~~~~lg~~~~---------------~~~~~~h~~~-glv~~-~~g-~KMSk 325 (507)
T PRK01611 264 YHLYKFERFDRVIYVVGADHHGHFKRLKAALKALGYDPD---------------ALEVLLHQMV-GLVRG-GEG-VKMST 325 (507)
T ss_pred HHHHHHhhcCEEEEEECCChHHHHHHHHHHHHHcCCCcc---------------cceEEEEEEE-EeeEC-CCC-CcccC
Confidence 32 344559999999999999999998873200 0000222211 22322 355 69999
Q ss_pred CCCCCCCeeecCCCHHH
Q 018259 287 SAPSDQSRINLLDPKDV 303 (359)
Q Consensus 287 S~p~~~s~I~L~D~p~~ 303 (359)
|. ++.|.+.|=-++
T Consensus 326 R~---Gn~i~l~dll~~ 339 (507)
T PRK01611 326 RA---GNVVTLDDLLDE 339 (507)
T ss_pred CC---CceeEHHHHHHH
Confidence 97 789988774444
No 55
>cd00668 Ile_Leu_Val_MetRS_core catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. Catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. These class I enzymes are all monomers. However, in some species, MetRS functions as a homodimer, as a result of an additional C-terminal domain. These enzymes aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. Enzymes in this subfamily share an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids. MetRS has a significantly shorter insertion, which lacks the editing function.
Probab=97.53 E-value=0.00077 Score=65.85 Aligned_cols=64 Identities=23% Similarity=0.343 Sum_probs=39.0
Q ss_pred CCCCcchhhhHHHHH-----HHHHHHhccCcEE-EEEeccceecCC-------C-------------C-HHHHHHHHHHH
Q 018259 86 QPTGSIHLGNYLGAI-----KNWIALQNSYETL-FFIVDLHAITLP-------Y-------------D-TQQLSKATRET 138 (359)
Q Consensus 86 ~PTG~lHLGnyig~i-----~~~~~lQ~~~~~~-i~IADlhA~t~~-------~-------------~-~~~l~~~~~~~ 138 (359)
-|+|.+||||+.+.+ ..+.++ .|++|. +.-.|.|.+-.. . . .+-.+++...+
T Consensus 10 ~~~g~~HiGH~~~~i~~D~i~R~~r~-~G~~v~~~~g~D~~g~~i~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (312)
T cd00668 10 YANGSLHLGHALTHIIADFIARYKRM-RGYEVPFLPGWDTHGLPIELKAERKGGRKKKTIWIEEFREDPKEFVEEMSGEH 88 (312)
T ss_pred CCCCCcchhHHHHHHHHHHHHHHHHh-CCCCCCCCCccCCCCHHHHHHHHHhcCcccccccHHHHHHHHHHHHHHHHHHH
Confidence 467999999998744 334333 277774 556688775320 0 1 12233444566
Q ss_pred HHHHHHcCcCCC
Q 018259 139 AAIYLACGIDNS 150 (359)
Q Consensus 139 ~~~~lA~GlDp~ 150 (359)
.+++.++|+..+
T Consensus 89 ~~~l~~lgI~~D 100 (312)
T cd00668 89 KEDFRRLGISYD 100 (312)
T ss_pred HHHHHHhCcccc
Confidence 778888998654
No 56
>PRK00260 cysS cysteinyl-tRNA synthetase; Validated
Probab=97.45 E-value=0.0013 Score=68.12 Aligned_cols=73 Identities=8% Similarity=0.006 Sum_probs=47.5
Q ss_pred CceEE-EeeCCCCcchhhhHHHHH--HHHHHHhc--cCcEEEEEe-cccee-cC------CCCHHH-HHHHHHHHHHHHH
Q 018259 78 KKRIV-SGVQPTGSIHLGNYLGAI--KNWIALQN--SYETLFFIV-DLHAI-TL------PYDTQQ-LSKATRETAAIYL 143 (359)
Q Consensus 78 ~~~i~-sGi~PTG~lHLGnyig~i--~~~~~lQ~--~~~~~i~IA-DlhA~-t~------~~~~~~-l~~~~~~~~~~~l 143 (359)
.+++| +|--|.|.+||||..+.+ .-+.+.++ |++|++..+ |.|.- +. ..++.+ .++++..+.+++.
T Consensus 23 ~v~~yvcgPtvy~~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~tD~ddki~~~A~~~g~~~~e~~~~~~~~f~~~~~ 102 (463)
T PRK00260 23 KVKMYVCGPTVYDYAHIGHARSFVVFDVLRRYLRYLGYKVTYVRNITDIDDKIIKRANEEGESIKELTERYIAAFHEDMD 102 (463)
T ss_pred cceEEEeCCccCCCcccccchhHHHHHHHHHHHHhcCCceEEeecCCCCcHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 44565 899999999999987655 23445544 788887655 33321 10 123433 4456678889999
Q ss_pred HcCc-CCC
Q 018259 144 ACGI-DNS 150 (359)
Q Consensus 144 A~Gl-Dp~ 150 (359)
++|+ .|+
T Consensus 103 ~Lgi~~~d 110 (463)
T PRK00260 103 ALNVLPPD 110 (463)
T ss_pred HcCCCCCC
Confidence 9999 454
No 57
>cd00812 LeuRS_core catalytic core domain of leucyl-tRNA synthetases. Leucyl tRNA synthetase (LeuRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. In Aquifex aeolicus, the gene encoding LeuRS is split in two, just before the KMSKS motif. Consequently, LeuRS is a heterodimer, which likely superimposes with the LeuRS monomer found in most other organisms. LeuRS has an insertion in the core domain, which is subject to both deletions and rearrangements and thus differs between prokaryotic LeuRS and archaeal/eukaryotic LeuRS. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=97.42 E-value=0.00049 Score=67.64 Aligned_cols=65 Identities=14% Similarity=0.190 Sum_probs=41.8
Q ss_pred CCCCcchhhhHHHHHH--HHHHHhc--cCcEE-EEEeccceecC-------CCCHHH-HHHHHHHHHHHHHHcCcCCC
Q 018259 86 QPTGSIHLGNYLGAIK--NWIALQN--SYETL-FFIVDLHAITL-------PYDTQQ-LSKATRETAAIYLACGIDNS 150 (359)
Q Consensus 86 ~PTG~lHLGnyig~i~--~~~~lQ~--~~~~~-i~IADlhA~t~-------~~~~~~-l~~~~~~~~~~~lA~GlDp~ 150 (359)
-|+|.+||||..+.+. -+.++++ |++|. +.-.|.|..-. ..++.+ .++....+.+++.++|+.++
T Consensus 10 y~ng~~HiGH~~~~v~~Dv~~R~lr~~G~~V~~v~g~Dd~g~~i~~~a~~~g~~~~e~~~~~~~~~~~~~~~lgi~~d 87 (314)
T cd00812 10 YPSGALHVGHVRTYTIGDIIARYKRMQGYNVLFPMGFDAFGLPAENAAIKIGRDPEDWTEYNIKKMKEQLKRMGFSYD 87 (314)
T ss_pred CCCCCccccchHHHHHHHHHHHHHHHcCCCcCCCCCcCCCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhcccee
Confidence 4789999999887552 2444443 78874 45666665321 123333 44556778888889999766
No 58
>cd00672 CysRS_core catalytic core domain of cysteinyl tRNA synthetase. Cysteinyl tRNA synthetase (CysRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=97.12 E-value=0.0051 Score=57.61 Aligned_cols=71 Identities=11% Similarity=-0.011 Sum_probs=45.0
Q ss_pred ceEEEeeCCCCcchhhhHHHHHH--HHHHHhc--cCcEEEE-EeccceecC-------CCCH-HHHHHHHHHHHHHHHHc
Q 018259 79 KRIVSGVQPTGSIHLGNYLGAIK--NWIALQN--SYETLFF-IVDLHAITL-------PYDT-QQLSKATRETAAIYLAC 145 (359)
Q Consensus 79 ~~i~sGi~PTG~lHLGnyig~i~--~~~~lQ~--~~~~~i~-IADlhA~t~-------~~~~-~~l~~~~~~~~~~~lA~ 145 (359)
....+|-=|-|.+||||....+. -+.+.++ |++|++. =.|.|..=. ..++ +-.++++..+.+++.++
T Consensus 22 ~~y~~gpt~y~~~HiGH~r~~v~~Dvl~R~lr~~G~~V~~~~g~dd~g~ki~~~A~~~g~~p~e~~~~~~~~f~~~~~~l 101 (213)
T cd00672 22 TMYVCGPTVYDYAHIGHARTYVVFDVLRRYLEDLGYKVRYVQNITDIDDKIIKRAREEGLSWKEVADYYTKEFFEDMKAL 101 (213)
T ss_pred eEEEeCCccCCCcccccchhHHHHHHHHHHHHhcCCeeEEEeecCCCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHc
Confidence 45556778889999999776542 2444443 6787654 334454311 1244 34456677888888899
Q ss_pred CcCC
Q 018259 146 GIDN 149 (359)
Q Consensus 146 GlDp 149 (359)
|+.+
T Consensus 102 ~i~~ 105 (213)
T cd00672 102 NVLP 105 (213)
T ss_pred CCCC
Confidence 9986
No 59
>PRK05347 glutaminyl-tRNA synthetase; Provisional
Probab=97.01 E-value=0.0022 Score=67.81 Aligned_cols=94 Identities=14% Similarity=0.041 Sum_probs=63.8
Q ss_pred EEEee--CCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEeccceecCCCCHHHHHHHHHHHHHHHHHcCcCCCccEEEEc
Q 018259 81 IVSGV--QPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQ 157 (359)
Q Consensus 81 i~sGi--~PTG~lHLGnyig~i~~~~~lQ~-~~~~~i~IADlhA~t~~~~~~~l~~~~~~~~~~~lA~GlDp~kt~i~~q 157 (359)
|.+=| .|||.+||||...++.+|...+. +..+++-+=|. ++. ....+....+..++..+|++++. .++.|
T Consensus 30 v~tRFaPsPtG~LHiG~ar~al~n~~~Ar~~~G~~iLRieDT----d~~--r~~~e~~~~I~~dL~wLGi~~d~-~~~~q 102 (554)
T PRK05347 30 VHTRFPPEPNGYLHIGHAKSICLNFGLAQDYGGKCNLRFDDT----NPE--KEDQEYVDSIKEDVRWLGFDWSG-ELRYA 102 (554)
T ss_pred eEEEeCCCCCCcccHHHHHHHHHHHHHHHHhCCEEEEEECCC----CCC--cCChHHHHHHHHHHHHcCCCCCC-Cceee
Confidence 44555 67799999999999999876655 55666666665 211 23446677888889999999953 37899
Q ss_pred cCcch-hhHHHHH-------HhccCCHHHHhc
Q 018259 158 SHVRA-HVELMWL-------LSSATPIGWLNK 181 (359)
Q Consensus 158 S~~~~-~~eL~w~-------L~~~~~i~~L~r 181 (359)
|+..+ +.+.+.. +.|.++-.++++
T Consensus 103 S~r~~~~y~~a~~Li~~G~AY~c~cs~eei~~ 134 (554)
T PRK05347 103 SDYFDQLYEYAVELIKKGKAYVDDLSAEEIRE 134 (554)
T ss_pred ecCHHHHHHHHHHHHHcCCEeeCCCCHHHHHH
Confidence 98654 3333322 347777776643
No 60
>TIGR00440 glnS glutaminyl-tRNA synthetase. This protein is a relatively rare aminoacyl-tRNA synthetase, found in the cytosolic compartment of eukaryotes, in E. coli and a number of other Gram-negative Bacteria, and in Deinococcus radiodurans. In contrast, the pathway to Gln-tRNA in mitochondria, Archaea, Gram-positive Bacteria, and a number of other lineages is by misacylation with Glu followed by transamidation to correct the aminoacylation to Gln. This enzyme is a class I tRNA synthetase (hit by the pfam model tRNA-synt_1c) and is quite closely related to glutamyl-tRNA synthetases.
Probab=97.01 E-value=0.0018 Score=68.07 Aligned_cols=90 Identities=10% Similarity=-0.007 Sum_probs=61.5
Q ss_pred CCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEeccceecCCCCHHHHHHHHHHHHHHHHHcCcCCCccEEEEccCcch-h
Q 018259 86 QPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQSHVRA-H 163 (359)
Q Consensus 86 ~PTG~lHLGnyig~i~~~~~lQ~-~~~~~i~IADlhA~t~~~~~~~l~~~~~~~~~~~lA~GlDp~kt~i~~qS~~~~-~ 163 (359)
.|||.+||||...++.+|.-.+. +..+++-|=|.-. .....+....+.+++..+|++++. .++.||+..+ +
T Consensus 8 sPtG~LHiG~ar~al~n~~~A~~~~G~~iLRieDTd~------~r~~~e~~~~I~~dL~wLG~~~d~-~~~~qS~~~~~~ 80 (522)
T TIGR00440 8 EPNGYLHIGHAKSICLNFGYAKYYNGTCNLRFDDTNP------VKEDPEYVESIKRDVEWLGFKWEG-KIRYSSDYFDEL 80 (522)
T ss_pred CCCCcccHHHHHHHHHHHHHHHHhCCEEEEEEcCCCc------ccCChHHHHHHHHHHHHcCCCCCC-CceEccccHHHH
Confidence 68999999999999999876655 5566666766522 123446677888889999999963 3788998654 2
Q ss_pred hHHHH-H------HhccCCHHHHhch
Q 018259 164 VELMW-L------LSSATPIGWLNKM 182 (359)
Q Consensus 164 ~eL~w-~------L~~~~~i~~L~r~ 182 (359)
.+.+- + +.|.++-.+|++.
T Consensus 81 ~~~a~~Li~~G~AY~c~cs~eel~~~ 106 (522)
T TIGR00440 81 YRYAEELIKKGLAYVDELTPEEIREY 106 (522)
T ss_pred HHHHHHHHHcCCEEeecCCHHHHHHh
Confidence 22221 1 3477777766443
No 61
>TIGR00463 gltX_arch glutamyl-tRNA synthetase, archaeal and eukaryotic family. The glutamyl-tRNA synthetases of the eukaryotic cytosol and of the Archaea are more similar to glutaminyl-tRNA synthetases than to bacterial glutamyl-tRNA synthetases. This alignment models just the eukaryotic cytosolic and archaeal forms of the enzyme. In some eukaryotes, the glutamyl-tRNA synthetase is part of a longer, multifunctional aminoacyl-tRNA ligase. In many species, the charging of tRNA(gln) proceeds first through misacylation with Glu and then transamidation. For this reason, glutamyl-tRNA synthetases may act on both tRNA(gln) and tRNA(glu).
Probab=96.91 E-value=0.0024 Score=67.74 Aligned_cols=93 Identities=17% Similarity=0.139 Sum_probs=63.6
Q ss_pred eEEEee--CCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEeccceecCCCCHHHHHHHHHHHHHHHHHcCcCCCccEEEE
Q 018259 80 RIVSGV--QPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFV 156 (359)
Q Consensus 80 ~i~sGi--~PTG~lHLGnyig~i~~~~~lQ~-~~~~~i~IADlhA~t~~~~~~~l~~~~~~~~~~~lA~GlDp~kt~i~~ 156 (359)
.+.+=| .|||.+||||...++.+|...+. +..+++-+-|. ++ .....+....+..++..+|++|+ .++.
T Consensus 93 ~vvtRFaPsPtG~LHiGharaalln~~~Ar~~~G~~iLRidDT----Dp--~R~~~e~~~~I~edL~wLGi~~d--~~~~ 164 (560)
T TIGR00463 93 EVVMRFAPNPSGPLHIGHARAAILNQYFAKKYKGKLIIRFDDT----DP--RRVKPEAYDMILEDLDWLGVKGD--EVVY 164 (560)
T ss_pred eeEEEeCCCCCCCccHHHHHHHHHHHHHHHhcCCEEEEEeCcC----Cc--ccccHHHHHHHHHHHHHcCCCCC--cccc
Confidence 466666 66799999999999988865554 55666667775 22 12344567788889999999998 4789
Q ss_pred ccCcchhh-HHHH-------HHhccCCHHHHh
Q 018259 157 QSHVRAHV-ELMW-------LLSSATPIGWLN 180 (359)
Q Consensus 157 qS~~~~~~-eL~w-------~L~~~~~i~~L~ 180 (359)
||+..+.. +..- .+.|.++-.++.
T Consensus 165 qSd~~~~y~~~a~~Li~~G~AY~C~cs~eei~ 196 (560)
T TIGR00463 165 QSDRIEEYYDYCRKLIEMGKAYVCDCPPEEFR 196 (560)
T ss_pred ccccHHHHHHHHHHHHHcCCceeecCCHHHHH
Confidence 99964332 2111 145777777664
No 62
>PRK14703 glutaminyl-tRNA synthetase/YqeY domain fusion protein; Provisional
Probab=96.88 E-value=0.0027 Score=69.60 Aligned_cols=96 Identities=14% Similarity=0.164 Sum_probs=64.3
Q ss_pred eEEEee--CCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEeccceecCCCCHHHHHHHHHHHHHHHHHcCcCCCccEEEE
Q 018259 80 RIVSGV--QPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFV 156 (359)
Q Consensus 80 ~i~sGi--~PTG~lHLGnyig~i~~~~~lQ~-~~~~~i~IADlhA~t~~~~~~~l~~~~~~~~~~~lA~GlDp~kt~i~~ 156 (359)
.|.+=| .|||.+||||...++.+|...+. +..+++-+=|. ++. ....+....+..++..+|++++. .++.
T Consensus 31 ~v~tRFaPsPtG~lHiGhar~alln~~~A~~~~G~~~LR~eDT----d~~--r~~~e~~~~I~~dl~wLG~~wd~-~~~~ 103 (771)
T PRK14703 31 RVVTRFPPEPNGYLHIGHAKSILLNFGIARDYGGRCHLRMDDT----NPE--TEDTEYVEAIKDDVRWLGFDWGE-HLYY 103 (771)
T ss_pred ceEEEeCcCCCCcccHHHHHHHHHHHHHHHHhCCEEEEEeCCC----CCC--cCChHHHHHHHHHHHHcCCCCCC-CceE
Confidence 355555 67799999999999989866654 55666667665 211 23446677888889999999875 3789
Q ss_pred ccCcchhh-HHH-HH------HhccCCHHHHhch
Q 018259 157 QSHVRAHV-ELM-WL------LSSATPIGWLNKM 182 (359)
Q Consensus 157 qS~~~~~~-eL~-w~------L~~~~~i~~L~r~ 182 (359)
||+..+.. +.. .+ +.|.++-.++++.
T Consensus 104 qS~~~~~y~~~a~~Li~~G~aY~c~cs~eei~~~ 137 (771)
T PRK14703 104 ASDYFERMYAYAEQLIKMGLAYVDSVSEEEIREL 137 (771)
T ss_pred eecCHHHHHHHHHHHHHcCCcccCcCCHHHHHHH
Confidence 99965322 111 12 4577776665433
No 63
>PTZ00437 glutaminyl-tRNA synthetase; Provisional
Probab=96.88 E-value=0.0026 Score=67.46 Aligned_cols=94 Identities=14% Similarity=0.057 Sum_probs=63.9
Q ss_pred eEEEee--CCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEeccceecCCCCHHHHHHHHHHHHHHHHHcCcCCCccEEEE
Q 018259 80 RIVSGV--QPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFV 156 (359)
Q Consensus 80 ~i~sGi--~PTG~lHLGnyig~i~~~~~lQ~-~~~~~i~IADlhA~t~~~~~~~l~~~~~~~~~~~lA~GlDp~kt~i~~ 156 (359)
.+.+=| .|||.+||||...++.+|...+. +..+++-|-|.- +. ....+....+..++..+|+++++ ++.
T Consensus 51 kv~tRFaPsPtG~LHiGharaalln~~~Ar~~gG~~iLRiEDTD----p~--r~~~e~~~~I~~dL~wLGi~~D~--~~~ 122 (574)
T PTZ00437 51 KPYFRFPPEPNGFLHIGHAKSMNLNFGSARAHGGKCYLRYDDTN----PE--TEEQVYIDAIMEMVKWMGWKPDW--VTF 122 (574)
T ss_pred cEEEEeCCCCCCcccHHHHHHHHHHHHHHHHhCCEEEEEECCCC----cc--ccChHHHHHHHHHHHHcCCCCCC--CCc
Confidence 355555 67799999999999989876655 556677777752 11 23446677888889999999985 568
Q ss_pred ccCcch-hhHHHH-H------HhccCCHHHHhc
Q 018259 157 QSHVRA-HVELMW-L------LSSATPIGWLNK 181 (359)
Q Consensus 157 qS~~~~-~~eL~w-~------L~~~~~i~~L~r 181 (359)
||++.+ +.+.+- + +.|.++-.++++
T Consensus 123 qS~y~~~~ye~A~~Li~~G~AY~C~cs~eei~~ 155 (574)
T PTZ00437 123 SSDYFDQLHEFAVQLIKDGKAYVDHSTPDELKQ 155 (574)
T ss_pred CchhHHHHHHHHHHHHHcCCEEEcCCCHHHHHH
Confidence 998755 222221 1 347777776653
No 64
>TIGR00435 cysS cysteinyl-tRNA synthetase. This model finds the cysteinyl-tRNA synthetase from most but not from all species. The enzyme from one archaeal species, Archaeoglobus fulgidus, is found but the equivalent enzymes from some other Archaea, including Methanococcus jannaschii, are not found, although biochemical evidence suggests that tRNA(Cys) in these species are charged directly with Cys rather than through a misacylation and correction pathway as for tRNA(Gln).
Probab=96.29 E-value=0.052 Score=56.49 Aligned_cols=72 Identities=13% Similarity=-0.039 Sum_probs=45.9
Q ss_pred ceEEEeeCCCCcchhhhHHHHHH--HHHHHhc--cCcEEEEEe-cccee-c-C-----CCCHHH-HHHHHHHHHHHHHHc
Q 018259 79 KRIVSGVQPTGSIHLGNYLGAIK--NWIALQN--SYETLFFIV-DLHAI-T-L-----PYDTQQ-LSKATRETAAIYLAC 145 (359)
Q Consensus 79 ~~i~sGi~PTG~lHLGnyig~i~--~~~~lQ~--~~~~~i~IA-DlhA~-t-~-----~~~~~~-l~~~~~~~~~~~lA~ 145 (359)
....+|.-|-|.+||||..+.+. -+.++++ |++|.+..+ |.|.- + . ..++.+ .+.+...+..++.++
T Consensus 23 ~~yvcgptvy~~~HiGhar~~v~~Dvl~R~lr~~G~~V~~v~n~tD~ddkIi~~A~~~g~~~~e~a~~~~~~f~~dl~~L 102 (465)
T TIGR00435 23 KMYVCGPTVYDYCHIGHARTAIVFDVLRRYLRYLGYKVQYVQNITDIDDKIIKRARENGESVYEVSERFIEAYFEDMKAL 102 (465)
T ss_pred eEEEecCccCCCcccccchHHHHHHHHHHHHHHcCCcEEEEEeeCCccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHh
Confidence 45567888889999999877552 2444443 788865543 54432 1 0 124433 345567788899999
Q ss_pred CcCCC
Q 018259 146 GIDNS 150 (359)
Q Consensus 146 GlDp~ 150 (359)
|+.++
T Consensus 103 gI~~d 107 (465)
T TIGR00435 103 NVLPP 107 (465)
T ss_pred CCCCC
Confidence 99755
No 65
>COG0143 MetG Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=94.19 E-value=0.15 Score=54.41 Aligned_cols=84 Identities=20% Similarity=0.334 Sum_probs=56.6
Q ss_pred CceEEEee-CCCCcchhhhHHHHH--HHHHHHhc--cCcEE-EEEeccceecC-------CCCHHH-HHHHHHHHHHHHH
Q 018259 78 KKRIVSGV-QPTGSIHLGNYLGAI--KNWIALQN--SYETL-FFIVDLHAITL-------PYDTQQ-LSKATRETAAIYL 143 (359)
Q Consensus 78 ~~~i~sGi-~PTG~lHLGnyig~i--~~~~~lQ~--~~~~~-i~IADlhA~t~-------~~~~~~-l~~~~~~~~~~~l 143 (359)
+..|-|.+ -|.|.+||||....+ .-|.++|+ |++++ ++-.|-|..-. ..+|++ +.++......+|.
T Consensus 6 ~~~VTtalpY~Ng~~HlGH~~~~l~ADv~aRy~Rl~G~~v~fvtGtDeHGt~I~~~A~~~g~tP~el~d~~~~~~~~~~~ 85 (558)
T COG0143 6 KILVTTALPYPNGPPHLGHLYTYLAADVYARYLRLRGYEVFFLTGTDEHGTKIELKAEKEGITPQELVDKNHEEFKELFK 85 (558)
T ss_pred cEEEecCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCCeEEEEeccCCCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 34444444 688999999988666 34788876 88875 46677777642 235655 4566778899999
Q ss_pred HcCcCCCccEEEEccCcchhh
Q 018259 144 ACGIDNSKASVFVQSHVRAHV 164 (359)
Q Consensus 144 A~GlDp~kt~i~~qS~~~~~~ 164 (359)
+++|+-| .|....-+.|.
T Consensus 86 ~l~IsfD---~F~rTt~~~h~ 103 (558)
T COG0143 86 ALNISFD---NFIRTTSPEHK 103 (558)
T ss_pred HhCCccc---ccccCCCHHHH
Confidence 9999876 34444444443
No 66
>PRK00133 metG methionyl-tRNA synthetase; Reviewed
Probab=93.82 E-value=0.18 Score=54.84 Aligned_cols=73 Identities=23% Similarity=0.411 Sum_probs=49.5
Q ss_pred CceEEEee-CCCCcchhhhHHHHHH--HHHHHhc--cCcEEEEEe-ccceecC-------CCCHH-HHHHHHHHHHHHHH
Q 018259 78 KKRIVSGV-QPTGSIHLGNYLGAIK--NWIALQN--SYETLFFIV-DLHAITL-------PYDTQ-QLSKATRETAAIYL 143 (359)
Q Consensus 78 ~~~i~sGi-~PTG~lHLGnyig~i~--~~~~lQ~--~~~~~i~IA-DlhA~t~-------~~~~~-~l~~~~~~~~~~~l 143 (359)
+..|.+++ -|+|.+||||..+.+. -+.++++ |++|+++.+ |-|..-. ..++. ...++...+.+.+.
T Consensus 3 ~~~itt~~py~ng~~HiGH~~~~l~aDv~aR~~r~~G~~V~~~~g~D~hG~~i~~~A~~~g~~p~e~~~~~~~~~~~~~~ 82 (673)
T PRK00133 3 KILVTCALPYANGPIHLGHLVEYIQADIWVRYQRMRGHEVLFVCADDAHGTPIMLKAEKEGITPEELIARYHAEHKRDFA 82 (673)
T ss_pred CEEEeCCCCCCCCcccccchHHHHHHHHHHHHHHhcCCeeEEeCccCCCChHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 46677777 6999999999887552 2444443 788876554 4444321 12443 45567778889999
Q ss_pred HcCcCCC
Q 018259 144 ACGIDNS 150 (359)
Q Consensus 144 A~GlDp~ 150 (359)
++|++++
T Consensus 83 ~l~i~~d 89 (673)
T PRK00133 83 GFGISFD 89 (673)
T ss_pred HhCCCCC
Confidence 9999887
No 67
>PF09334 tRNA-synt_1g: tRNA synthetases class I (M); InterPro: IPR015413 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain is found in methionyl and leucyl tRNA synthetases. ; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2D5B_A 1A8H_A 1WOY_A 2D54_A 4DLP_A 2CT8_B 2CSX_A 1MED_A 1PFU_A 1PFW_A ....
Probab=93.27 E-value=0.32 Score=49.52 Aligned_cols=75 Identities=19% Similarity=0.260 Sum_probs=45.4
Q ss_pred CCCCcchhhhHHHHHH--HHHHHhc--cCcEE-EEEeccceecC-------CCCHHH-HHHHHHHHHHHHHHcCcCCCcc
Q 018259 86 QPTGSIHLGNYLGAIK--NWIALQN--SYETL-FFIVDLHAITL-------PYDTQQ-LSKATRETAAIYLACGIDNSKA 152 (359)
Q Consensus 86 ~PTG~lHLGnyig~i~--~~~~lQ~--~~~~~-i~IADlhA~t~-------~~~~~~-l~~~~~~~~~~~lA~GlDp~kt 152 (359)
-|.|.+||||....+. -+.++++ |++++ +.-.|-|..-. ..+|++ +.++...+.+.|.++||+.+
T Consensus 9 Y~Ng~lHlGH~~~~l~ADv~aR~~r~~G~~v~~~tGtDehG~~i~~~A~~~g~~p~~~~~~~~~~~~~~~~~~~I~~D-- 86 (391)
T PF09334_consen 9 YPNGDLHLGHLYPYLAADVLARYLRLRGHDVLFVTGTDEHGSKIETAAEKQGIDPEEFCDKYSAKFKELLEALNISYD-- 86 (391)
T ss_dssp ETSSS-BHHHHHHHHHHHHHHHHHHHTT-EEEEEEEEE-SSHHHHHHHHHTTS-HHHHHHHHHHHHHHHHHHTT---S--
T ss_pred CCCCCCCCChhHHHHHHHHHHHHHhhcccceeeEEecchhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCCCc--
Confidence 5889999999876542 2334433 78875 57789998753 236654 45667788899999999987
Q ss_pred EEEEccCcchh
Q 018259 153 SVFVQSHVRAH 163 (359)
Q Consensus 153 ~i~~qS~~~~~ 163 (359)
.|.++.-.+|
T Consensus 87 -~F~rTt~~~h 96 (391)
T PF09334_consen 87 -RFIRTTDDRH 96 (391)
T ss_dssp -EEEETTSHHH
T ss_pred -ceeCCCCHHH
Confidence 3555554444
No 68
>PLN02224 methionine-tRNA ligase
Probab=92.98 E-value=0.39 Score=51.88 Aligned_cols=73 Identities=11% Similarity=0.124 Sum_probs=50.9
Q ss_pred CceEEEee-CCCCcchhhhHHHHHH--HHHHHhc--cCcEEE-EEeccceec--C-----CCCH-HHHHHHHHHHHHHHH
Q 018259 78 KKRIVSGV-QPTGSIHLGNYLGAIK--NWIALQN--SYETLF-FIVDLHAIT--L-----PYDT-QQLSKATRETAAIYL 143 (359)
Q Consensus 78 ~~~i~sGi-~PTG~lHLGnyig~i~--~~~~lQ~--~~~~~i-~IADlhA~t--~-----~~~~-~~l~~~~~~~~~~~l 143 (359)
+..|-+++ -|+|.+||||..+.+. -+.++++ |++|++ .-.|-|..- . ..++ +.+++++..+.+.+.
T Consensus 70 ~~~ittp~pY~NG~~HiGHa~~~~~aDviaR~~r~~G~~V~fv~G~DehG~kI~~~A~~~g~~p~e~~~~~~~~~~~~~~ 149 (616)
T PLN02224 70 TFVLTTPLYYVNAPPHMGSAYTTIAADSIARFQRLLGKKVIFITGTDEHGEKIATSAAANGRNPPEHCDIISQSYRTLWK 149 (616)
T ss_pred eEEEeCCCCCCCCCCchhccHHHHHHHHHHHHHHhcCCceEEecCcCCcchHHHHHHHHcCCChHHHHHHHHHHHHHHHH
Confidence 46677777 7899999999887652 2444444 788754 567778732 1 1233 556677778888999
Q ss_pred HcCcCCC
Q 018259 144 ACGIDNS 150 (359)
Q Consensus 144 A~GlDp~ 150 (359)
++|++++
T Consensus 150 ~l~I~~D 156 (616)
T PLN02224 150 DLDIAYD 156 (616)
T ss_pred HcCCCCC
Confidence 9999987
No 69
>PLN02610 probable methionyl-tRNA synthetase
Probab=91.54 E-value=0.64 Score=51.71 Aligned_cols=75 Identities=17% Similarity=0.198 Sum_probs=50.7
Q ss_pred CCceEEEee-CCCCcchhhhHHHH-H--HHHHHHhc--cCcEEE-EEeccceecC-------CCCHHH-HHHHHHHHHHH
Q 018259 77 VKKRIVSGV-QPTGSIHLGNYLGA-I--KNWIALQN--SYETLF-FIVDLHAITL-------PYDTQQ-LSKATRETAAI 141 (359)
Q Consensus 77 ~~~~i~sGi-~PTG~lHLGnyig~-i--~~~~~lQ~--~~~~~i-~IADlhA~t~-------~~~~~~-l~~~~~~~~~~ 141 (359)
++..|-+.+ -|+|.+||||..+. + .-+.++++ |+++++ +-.|-|..-. ..++++ +.++...+...
T Consensus 17 ~~~~ITt~~pY~Ng~~HlGH~~~~~l~aDv~aRy~r~~G~~v~f~~GtDehG~~i~~~A~~~g~~p~e~~d~~~~~~~~~ 96 (801)
T PLN02610 17 RNILITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNAIYICGTDEYGTATETKALEENCTPKEICDKYHAIHKEV 96 (801)
T ss_pred CCEEEeCCCCCCCCCcccchhhhhHHHHHHHHHHHHhCCCceEecccccCCcHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 455565655 67899999998863 4 34666665 788865 5567777643 234444 44556677788
Q ss_pred HHHcCcCCCc
Q 018259 142 YLACGIDNSK 151 (359)
Q Consensus 142 ~lA~GlDp~k 151 (359)
|.++||+.++
T Consensus 97 ~~~l~i~~D~ 106 (801)
T PLN02610 97 YDWFDISFDK 106 (801)
T ss_pred HHHcCCcccc
Confidence 9999999873
No 70
>PRK12268 methionyl-tRNA synthetase; Reviewed
Probab=91.08 E-value=0.56 Score=49.50 Aligned_cols=71 Identities=23% Similarity=0.352 Sum_probs=46.5
Q ss_pred eEEEeeCCC--CcchhhhHHHH-H-----HHHHHHhccCcEEE-EEeccceecC-------CCCH-HHHHHHHHHHHHHH
Q 018259 80 RIVSGVQPT--GSIHLGNYLGA-I-----KNWIALQNSYETLF-FIVDLHAITL-------PYDT-QQLSKATRETAAIY 142 (359)
Q Consensus 80 ~i~sGi~PT--G~lHLGnyig~-i-----~~~~~lQ~~~~~~i-~IADlhA~t~-------~~~~-~~l~~~~~~~~~~~ 142 (359)
.+++.-=|+ |.+||||..+. + ..+.+++ |++|++ .=.|.|..-. ..++ +..++++..+.+++
T Consensus 5 ~~i~~~~py~ng~~HiGH~~~~~~~~D~~~R~~r~~-G~~v~~~~g~d~~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~~ 83 (556)
T PRK12268 5 ILITSAWPYANGPLHLGHLAGSGLPADVFARYQRLK-GNEVLFVSGSDEHGTPIELAAKKEGVTPQELADKYHEEHKEDF 83 (556)
T ss_pred EEEecCCCCCCCCccccccccchhHHHHHHHHHHhc-CCceEecCcCCCcccHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 455555555 99999998875 3 3343433 788865 4556664432 2244 34466778888999
Q ss_pred HHcCcCCCc
Q 018259 143 LACGIDNSK 151 (359)
Q Consensus 143 lA~GlDp~k 151 (359)
.++|++++.
T Consensus 84 ~~l~i~~d~ 92 (556)
T PRK12268 84 KKLGISYDL 92 (556)
T ss_pred HHcCCcCCC
Confidence 999999874
No 71
>TIGR00234 tyrS tyrosyl-tRNA synthetase. This tyrosyl-tRNA synthetase model starts picking up tryptophanyl-tRNA synthetases at scores of 0 and below. The proteins found by this model have a deep split between two groups. One group contains bacterial and organellar eukaryotic examples. The other contains archaeal and cytosolic eukaryotic examples.
Probab=90.31 E-value=0.37 Score=48.94 Aligned_cols=10 Identities=20% Similarity=0.414 Sum_probs=4.7
Q ss_pred HHHHHHcCCC
Q 018259 333 LSIYQLISGK 342 (359)
Q Consensus 333 ~~i~~~~~~~ 342 (359)
.++...+-+.
T Consensus 286 ~ei~~~vhg~ 295 (377)
T TIGR00234 286 KEITKYVHGE 295 (377)
T ss_pred HHHHHHhcCH
Confidence 3444444443
No 72
>PRK00390 leuS leucyl-tRNA synthetase; Validated
Probab=89.60 E-value=1.1 Score=49.83 Aligned_cols=72 Identities=13% Similarity=0.140 Sum_probs=48.8
Q ss_pred CceEEEeeCCC--CcchhhhHHHHHH--HHHHHhc--cCcEEE-EEeccceecC-------CCCH-HHHHHHHHHHHHHH
Q 018259 78 KKRIVSGVQPT--GSIHLGNYLGAIK--NWIALQN--SYETLF-FIVDLHAITL-------PYDT-QQLSKATRETAAIY 142 (359)
Q Consensus 78 ~~~i~sGi~PT--G~lHLGnyig~i~--~~~~lQ~--~~~~~i-~IADlhA~t~-------~~~~-~~l~~~~~~~~~~~ 142 (359)
+..++.|+ |+ |.+|+||.++.+. -+.++|+ |+++++ .-.|-|.+-. ..++ +...+++..+..++
T Consensus 33 ~~~i~~~p-Py~nG~lHiGH~~~~~~~Dii~Ry~rm~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~~~~~ 111 (805)
T PRK00390 33 KYYVLDMF-PYPSGGLHMGHVRNYTIGDVIARYKRMQGYNVLHPMGWDAFGLPAENAAIKTGTHPAEWTYENIANMKKQL 111 (805)
T ss_pred CEEEEccC-CCCCCCcchhhhHHHHHHHHHHHHHHhcCCcccccCccCCCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 56777776 66 9999999887553 2556655 788765 4556666532 1133 44556777888899
Q ss_pred HHcCcCCC
Q 018259 143 LACGIDNS 150 (359)
Q Consensus 143 lA~GlDp~ 150 (359)
.++|+..+
T Consensus 112 ~~lGi~~D 119 (805)
T PRK00390 112 KSLGFSYD 119 (805)
T ss_pred HHhCCccc
Confidence 99998544
No 73
>cd00814 MetRS_core catalytic core domain of methioninyl-tRNA synthetases. Methionine tRNA synthetase (MetRS) catalytic core domain. This class I enzyme aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. MetRS, which consists of the core domain and an anti-codon binding domain, functions as a monomer. However, in some species the anti-codon binding domain is followed by an EMAP domain. In this case, MetRS functions as a homodimer. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. As a result of a deletion event, MetRS has a significantly shorter core domain insertion than IleRS, ValRS, and LeuR. Consequently, the MetRS insertion lacks the editing function.
Probab=88.45 E-value=0.91 Score=44.64 Aligned_cols=66 Identities=23% Similarity=0.290 Sum_probs=42.6
Q ss_pred CCCCcchhhhHHHHHH--HHHHHhc--cCcEEE-EEeccceecC-------CCCHHHHH-HHHHHHHHHHHHcCcCCCc
Q 018259 86 QPTGSIHLGNYLGAIK--NWIALQN--SYETLF-FIVDLHAITL-------PYDTQQLS-KATRETAAIYLACGIDNSK 151 (359)
Q Consensus 86 ~PTG~lHLGnyig~i~--~~~~lQ~--~~~~~i-~IADlhA~t~-------~~~~~~l~-~~~~~~~~~~lA~GlDp~k 151 (359)
-|+|.+||||..+.+. -+.+.++ |++|.+ .=.|.|..-. ..+++++. ++...+.+++.++|++++.
T Consensus 10 y~ng~~HlGH~~~~~~~Dv~~R~~r~~G~~V~~~~g~Dd~g~~i~~~a~~~g~~~~e~~~~~~~~~~~~l~~LgI~~D~ 88 (319)
T cd00814 10 YVNGVPHLGHLYGTVLADVFARYQRLRGYDVLFVTGTDEHGTKIEQKAEEEGVTPQELCDKYHEIFKDLFKWLNISFDY 88 (319)
T ss_pred CCCCCcchhhHHHHHHHHHHHHHHHhCCCcccccCccCCCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCcCCC
Confidence 3559999999988652 2334443 778754 5566665432 22454444 4556778899999998874
No 74
>PRK11893 methionyl-tRNA synthetase; Reviewed
Probab=87.64 E-value=1.4 Score=45.80 Aligned_cols=66 Identities=15% Similarity=0.285 Sum_probs=42.0
Q ss_pred CCCCcchhhhHHHHHH--HHHHHhc--cCcEEE-EEeccceecC-------CCCH-HHHHHHHHHHHHHHHHcCcCCCc
Q 018259 86 QPTGSIHLGNYLGAIK--NWIALQN--SYETLF-FIVDLHAITL-------PYDT-QQLSKATRETAAIYLACGIDNSK 151 (359)
Q Consensus 86 ~PTG~lHLGnyig~i~--~~~~lQ~--~~~~~i-~IADlhA~t~-------~~~~-~~l~~~~~~~~~~~lA~GlDp~k 151 (359)
-|+|.+||||..+.+. -+.+.++ |+++.+ +-.|.|..-. ..++ +..+.+...+.+++.++|++++.
T Consensus 11 ~~~g~~HiGh~~~~~~~Dv~~R~~r~~G~~v~~v~g~dd~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~l~I~~D~ 89 (511)
T PRK11893 11 YPNGKPHIGHAYTTLAADVLARFKRLRGYDVFFLTGTDEHGQKIQRKAEEAGISPQELADRNSAAFKRLWEALNISYDD 89 (511)
T ss_pred CCCCCcccchhHHHHHHHHHHHHHHhcCCcEEecCCCCCCChHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCCcCC
Confidence 4669999999776542 2444543 788754 4556564311 1233 33445667788899999998773
No 75
>KOG1149 consensus Glutamyl-tRNA synthetase (mitochondrial) [Translation, ribosomal structure and biogenesis]
Probab=87.26 E-value=0.99 Score=46.80 Aligned_cols=77 Identities=18% Similarity=0.198 Sum_probs=53.2
Q ss_pred ceEEEeeCCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEeccceecCCCCHHHHHHHHHHHHHHHHHcCcCCCccE----
Q 018259 79 KRIVSGVQPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKAS---- 153 (359)
Q Consensus 79 ~~i~sGi~PTG~lHLGnyig~i~~~~~lQ~-~~~~~i~IADlhA~t~~~~~~~l~~~~~~~~~~~lA~GlDp~kt~---- 153 (359)
+|+-..=-|||.+|||-.-.++.+++-..+ +.+.++-|-|-.- ...+......+..++..+||+||..-
T Consensus 34 VRvRFAPSPTGfLHlGgLRTALfNYLfArk~gGkFiLRiEDTDq------~R~v~gs~e~i~~~L~w~nl~~DEgP~~gG 107 (524)
T KOG1149|consen 34 VRVRFAPSPTGFLHLGGLRTALFNYLFARKKGGKFILRIEDTDQ------KRLIRGSEEAIYEDLKWANLDWDEGPGVGG 107 (524)
T ss_pred eEEeecCCCCcceehhhHHHHHHHHHHHHhcCCeEEEEeccccc------cccccchHHHHHHHHHhcCCCcccCCCcCC
Confidence 455555578899999999999988766655 5666666776421 12344445566678888999999753
Q ss_pred ---EEEccCcc
Q 018259 154 ---VFVQSHVR 161 (359)
Q Consensus 154 ---i~~qS~~~ 161 (359)
=|.||+-.
T Consensus 108 ~~GPY~QS~R~ 118 (524)
T KOG1149|consen 108 PFGPYEQSERL 118 (524)
T ss_pred CCCchhhHHHH
Confidence 37888753
No 76
>PRK12267 methionyl-tRNA synthetase; Reviewed
Probab=86.90 E-value=1.1 Score=48.36 Aligned_cols=65 Identities=15% Similarity=0.271 Sum_probs=43.1
Q ss_pred CCCCcchhhhHHHHHH--HHHHHhc--cCcEE-EEEeccceecC-------CCCHHH-HHHHHHHHHHHHHHcCcCCC
Q 018259 86 QPTGSIHLGNYLGAIK--NWIALQN--SYETL-FFIVDLHAITL-------PYDTQQ-LSKATRETAAIYLACGIDNS 150 (359)
Q Consensus 86 ~PTG~lHLGnyig~i~--~~~~lQ~--~~~~~-i~IADlhA~t~-------~~~~~~-l~~~~~~~~~~~lA~GlDp~ 150 (359)
-|+|.+||||..+.+. -+.++++ |++++ ++-.|.|..-. ..++++ +.++...+..++.++|++++
T Consensus 14 y~ng~~HiGH~~~~~~aDv~~R~~r~~G~~v~~~~g~D~~g~~i~~~A~~~g~~~~e~~d~~~~~fk~~l~~lgI~~D 91 (648)
T PRK12267 14 YPNGKPHIGHAYTTIAADALARYKRLQGYDVFFLTGTDEHGQKIQQAAEKAGKTPQEYVDEISAGFKELWKKLDISYD 91 (648)
T ss_pred CCCCCcccccchHHHHHHHHHHHHHhcCCceEeecCCCCcchHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 4669999999876552 2445443 78875 56777776532 124433 44556678888899999776
No 77
>cd00818 IleRS_core catalytic core domain of isoleucyl-tRNA synthetases. Isoleucine amino-acyl tRNA synthetases (IleRS) catalytic core domain . This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. IleRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=86.63 E-value=1.5 Score=43.75 Aligned_cols=37 Identities=22% Similarity=0.129 Sum_probs=24.9
Q ss_pred CCCCcchhhhHHHHHH--HHHHHhc--cCcEE-EEEecccee
Q 018259 86 QPTGSIHLGNYLGAIK--NWIALQN--SYETL-FFIVDLHAI 122 (359)
Q Consensus 86 ~PTG~lHLGnyig~i~--~~~~lQ~--~~~~~-i~IADlhA~ 122 (359)
-|+|.+||||..+.+. -+.++++ |++|+ +.-.|-|.+
T Consensus 11 ~vnG~lHiGHa~~~~~~Dvl~Ry~r~~G~~V~~~~g~D~hG~ 52 (338)
T cd00818 11 YANGLPHYGHALNKILKDIINRYKTMQGYYVPRRPGWDCHGL 52 (338)
T ss_pred CCCCCchHHHHHHHHHHHHHHHHHHhcCCccCCcCCcCCCCc
Confidence 4679999999987552 2444444 78875 456676665
No 78
>TIGR00398 metG methionyl-tRNA synthetase. The methionyl-tRNA synthetase (metG) is a class I amino acyl-tRNA ligase. This model appears to recognize the methionyl-tRNA synthetase of every species, including eukaryotic cytosolic and mitochondrial forms. The UPGMA difference tree calculated after search and alignment according to this model shows an unusual deep split between two families of MetG. One family contains forms from the Archaea, yeast cytosol, spirochetes, and E. coli, among others. The other family includes forms from yeast mitochondrion, Synechocystis sp., Bacillus subtilis, the Mycoplasmas, Aquifex aeolicus, and Helicobacter pylori. The E. coli enzyme is homodimeric, although monomeric forms can be prepared that are fully active. Activity of this enzyme in bacteria includes aminoacylation of fMet-tRNA with Met; subsequent formylation of the Met to fMet is catalyzed by a separate enzyme. Note that the protein from Aquifex aeolicus is split into an alpha (large) and beta (sma
Probab=86.53 E-value=1.4 Score=46.35 Aligned_cols=65 Identities=23% Similarity=0.279 Sum_probs=41.3
Q ss_pred CCCCcchhhhHHHHHH--HHHHHhc--cCcEEE-EEeccceecC-------CCCHHHH-HHHHHHHHHHHHHcCcCCC
Q 018259 86 QPTGSIHLGNYLGAIK--NWIALQN--SYETLF-FIVDLHAITL-------PYDTQQL-SKATRETAAIYLACGIDNS 150 (359)
Q Consensus 86 ~PTG~lHLGnyig~i~--~~~~lQ~--~~~~~i-~IADlhA~t~-------~~~~~~l-~~~~~~~~~~~lA~GlDp~ 150 (359)
-|+|.+||||....+. -+.+.++ |++|.+ .-.|.|..-. ..++.++ +++...+.+++.++|++++
T Consensus 9 ~~ng~lHiGH~~~~~~aDvl~R~~r~~G~~V~~v~g~D~~g~~i~~~a~~~g~~~~e~~~~~~~~~~~~l~~LgI~~D 86 (530)
T TIGR00398 9 YANGKPHLGHAYTTILADVYARYKRLRGYEVLFVCGTDEHGTKIELKAEQEGLTPKELVDKYHEEFKDDWKWLNISFD 86 (530)
T ss_pred CCCCCcccchhHHHHHHHHHHHHHHhcCCeEEEecccCCCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 3789999999886552 2334443 788865 4455554321 1244444 3556678889999999876
No 79
>TIGR00396 leuS_bact leucyl-tRNA synthetase, eubacterial and mitochondrial family. The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both eubacterial and mitochondrial leucyl-tRNA synthetases. It generates higher scores for some valyl-tRNA synthetases than for any archaeal or eukaryotic cytosolic leucyl-tRNA synthetase. Note that the enzyme from Aquifex aeolicus is split into alpha and beta chains; neither chain is long enough to score above the trusted cutoff, but the alpha chain scores well above the noise cutoff. The beta chain must be found by a model and search designed for partial length matches.
Probab=86.37 E-value=2.7 Score=47.11 Aligned_cols=73 Identities=15% Similarity=0.162 Sum_probs=47.5
Q ss_pred CceEEEee-CCCCcchhhhHHHHHH--HHHHHhc--cCcEEEEE-eccceecC-------CCC-HHHHHHHHHHHHHHHH
Q 018259 78 KKRIVSGV-QPTGSIHLGNYLGAIK--NWIALQN--SYETLFFI-VDLHAITL-------PYD-TQQLSKATRETAAIYL 143 (359)
Q Consensus 78 ~~~i~sGi-~PTG~lHLGnyig~i~--~~~~lQ~--~~~~~i~I-ADlhA~t~-------~~~-~~~l~~~~~~~~~~~l 143 (359)
+..++.|+ -|||.+|+||..+.+. -+.++++ |++|++.. -|-|.+-. ..+ .+...+++..+...+.
T Consensus 30 k~~v~~~pPy~nG~lHiGH~~~~~~~Dvi~Ry~rm~G~~V~~~~G~D~~Glpie~~a~~~g~~p~~~~~~~~~~~~~~~~ 109 (842)
T TIGR00396 30 KYYILDMFPYPSGALHMGHVRNYTITDVLSRYYRMKGYNVLHPMGWDAFGLPAENAAIKRGIHPAKWTYENIANMKKQLQ 109 (842)
T ss_pred CEEEEcCCCCCCCccccchhHHHHHHHHHHHHHHhcCCceeccCCcCCCChHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 35666664 5669999999887553 2555554 88887644 45565521 112 3445577788888999
Q ss_pred HcCcCCC
Q 018259 144 ACGIDNS 150 (359)
Q Consensus 144 A~GlDp~ 150 (359)
++|+..+
T Consensus 110 ~lG~~~D 116 (842)
T TIGR00396 110 ALGFSYD 116 (842)
T ss_pred HhCCccc
Confidence 9997443
No 80
>TIGR00456 argS arginyl-tRNA synthetase. This model recognizes arginyl-tRNA synthetase in every completed genome to date. An interesting feature of the alignment of all arginyl-tRNA synthetases is a fairly deep split between two families. One family includes archaeal, eukaryotic and organellar, spirochete, E. coli, and Synechocystis sp. The second, sharing a deletion of about 25 residues in the central region relative to the first, includes Bacillus subtilis, Aquifex aeolicus, the Mycoplasmas and Mycobacteria, and the Gram-negative bacterium Helicobacter pylori.
Probab=85.48 E-value=0.69 Score=49.30 Aligned_cols=67 Identities=13% Similarity=0.091 Sum_probs=45.6
Q ss_pred cceeecccchHHHHHHHHHHHHHhhhhhCCccccccCCCCCccccCCc-eecCCCCcccccCCCCCCcCCCCCCCCCCee
Q 018259 217 SDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPE-PLIPPAGARVMSLTDGLSKMSKSAPSDQSRI 295 (359)
Q Consensus 217 adivpvG~DQ~~hieLaRdia~k~n~~~g~~~~~~~~~~~~~~~~~P~-~l~~~~~~~l~sL~dg~~KMSKS~p~~~s~I 295 (359)
--|-.+|.||..|+.-...++..++. +.|. ..+... -++ .+ .|||||. ++.|
T Consensus 329 ~iI~V~g~~q~~h~~~v~~~l~~lG~------------------~~~~~l~h~~~-~~V----~~-~kmSkr~---Gn~V 381 (566)
T TIGR00456 329 KMIYVWGSDHHLHIAQFFAILEKLGF------------------YKKKELIHLNF-GMV----PL-GSMKTRR---GNVI 381 (566)
T ss_pred EEEEEecCcHHHHHHHHHHHHHHcCC------------------CCCCceEEEEE-EEE----EC-CCCCccC---Ccee
Confidence 44567999999999999999999873 2242 222222 222 23 5999997 7999
Q ss_pred ecCCCHHHHHHHhhh
Q 018259 296 NLLDPKDVIANKIKR 310 (359)
Q Consensus 296 ~L~D~p~~I~kKI~r 310 (359)
.+.|=.+++.++...
T Consensus 382 ~~~dll~~~~~ra~~ 396 (566)
T TIGR00456 382 SLDNLLDEASKRAGN 396 (566)
T ss_pred eHHHHHHHHHHHHHH
Confidence 998766665554333
No 81
>cd00817 ValRS_core catalytic core domain of valyl-tRNA synthetases. Valine amino-acyl tRNA synthetase (ValRS) catalytic core domain. This enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. ValRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=84.89 E-value=0.63 Score=47.11 Aligned_cols=37 Identities=27% Similarity=0.357 Sum_probs=25.3
Q ss_pred CCCCcchhhhHHHHHH--HHHHHhc--cCcEEE-EEecccee
Q 018259 86 QPTGSIHLGNYLGAIK--NWIALQN--SYETLF-FIVDLHAI 122 (359)
Q Consensus 86 ~PTG~lHLGnyig~i~--~~~~lQ~--~~~~~i-~IADlhA~ 122 (359)
-|+|.+||||..+.+. -+.++++ |++|++ .-.|-|.+
T Consensus 11 y~nG~lHiGH~~~~~~~Dv~~Ry~r~~G~~V~~~~G~D~hG~ 52 (382)
T cd00817 11 NVTGSLHMGHALNNTIQDIIARYKRMKGYNVLWPPGTDHAGI 52 (382)
T ss_pred CCCCcchHHHHHHHHHHHHHHHHHHhcCCcccccCccCCCCC
Confidence 4779999999887653 2555554 788754 56677744
No 82
>KOG1147 consensus Glutamyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=84.75 E-value=2.4 Score=45.20 Aligned_cols=73 Identities=19% Similarity=0.218 Sum_probs=43.9
Q ss_pred eEEEee--CCCCcchhhhHHHHHHHHHHHhcc-CcEEEEEeccceecCCC-CHHHHHHHHHHHHHHHHHcCcCCCccEEE
Q 018259 80 RIVSGV--QPTGSIHLGNYLGAIKNWIALQNS-YETLFFIVDLHAITLPY-DTQQLSKATRETAAIYLACGIDNSKASVF 155 (359)
Q Consensus 80 ~i~sGi--~PTG~lHLGnyig~i~~~~~lQ~~-~~~~i~IADlhA~t~~~-~~~~l~~~~~~~~~~~lA~GlDp~kt~i~ 155 (359)
.|++-| +|||.+||||.-.++.+|-..|.. .++++- =|. |+|. +.++.+ ..+..++--+||.|++. =
T Consensus 200 kVv~RFPPEpSGyLHIGHAKAALLNqYfa~~~~G~LIvR-FDD---TNPaKE~~eFe---~~IleDl~~LgIkpd~~--T 270 (712)
T KOG1147|consen 200 KVVTRFPPEPSGYLHIGHAKAALLNQYFAQAYQGKLIVR-FDD---TNPAKENEEFE---DVILEDLSLLGIKPDRV--T 270 (712)
T ss_pred ceEEecCCCCCceeehhhHHHHHHHHHHHHhcCceEEEE-ecC---CCcchhhHHHH---HHHHHHHHHhCcCccee--e
Confidence 566666 889999999998888776544542 334443 333 2332 223333 34555666679999963 3
Q ss_pred EccCcc
Q 018259 156 VQSHVR 161 (359)
Q Consensus 156 ~qS~~~ 161 (359)
.-||+.
T Consensus 271 yTSDyF 276 (712)
T KOG1147|consen 271 YTSDYF 276 (712)
T ss_pred echhhH
Confidence 446553
No 83
>PRK11893 methionyl-tRNA synthetase; Reviewed
Probab=83.65 E-value=0.53 Score=48.90 Aligned_cols=60 Identities=27% Similarity=0.343 Sum_probs=35.6
Q ss_pred cccceeecccchHHHHHHHHHHHHHhhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCcCCCCCCCCCCe
Q 018259 215 YQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSR 294 (359)
Q Consensus 215 ~~adivpvG~DQ~~hieLaRdia~k~n~~~g~~~~~~~~~~~~~~~~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~~s~ 294 (359)
+..|+...|.||...+-.. .+|.-+.. | .+.|..++.. .++. + +| +|||||. +|.
T Consensus 253 ~~~D~~~~G~D~~~~h~~~-~~a~~~a~--~--------------~~~p~~~~~~--g~v~-~-~G-~KMSKS~---GN~ 307 (511)
T PRK11893 253 WPADVHLIGKDILRFHAVY-WPAFLMAA--G--------------LPLPKRVFAH--GFLT-L-DG-EKMSKSL---GNV 307 (511)
T ss_pred CCCcceEecccccccchhH-HHHHHHhC--C--------------CCCCCEEEee--ccEE-E-CC-eeecccC---CcE
Confidence 3578999999998853322 12222211 1 2346555442 3343 4 66 7999997 788
Q ss_pred eecCC
Q 018259 295 INLLD 299 (359)
Q Consensus 295 I~L~D 299 (359)
|.+.|
T Consensus 308 i~~~d 312 (511)
T PRK11893 308 IDPFD 312 (511)
T ss_pred EcHHH
Confidence 88754
No 84
>PRK05743 ileS isoleucyl-tRNA synthetase; Reviewed
Probab=83.09 E-value=0.88 Score=51.29 Aligned_cols=58 Identities=26% Similarity=0.257 Sum_probs=34.5
Q ss_pred hcccceeecccchH---HHHHHHHHHHHHhhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCcCCCCCCC
Q 018259 214 LYQSDFVPVGEDQK---QHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPS 290 (359)
Q Consensus 214 ~~~adivpvG~DQ~---~hieLaRdia~k~n~~~g~~~~~~~~~~~~~~~~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~ 290 (359)
.+-+|+...|.||. .|-.+-..++- + |.. .|..++. + .++... +| +|||||.
T Consensus 543 ~~P~Dl~~~G~Di~r~Wf~~~l~~~~~~-~----g~~--------------P~k~vl~-H-G~vld~-~G-~KMSKSl-- 597 (912)
T PRK05743 543 GYPADLYLEGSDQHRGWFQSSLLTSVAT-R----GKA--------------PYKQVLT-H-GFTVDG-KG-RKMSKSL-- 597 (912)
T ss_pred CCCceEEEecccccchHHHHHHHHHHHh-c----CCC--------------ccceeEE-e-eeEECC-CC-CCCCCCC--
Confidence 45699999999997 44445444443 2 221 2333332 1 345443 56 7999997
Q ss_pred CCCeeec
Q 018259 291 DQSRINL 297 (359)
Q Consensus 291 ~~s~I~L 297 (359)
+|.|..
T Consensus 598 -GNvIdP 603 (912)
T PRK05743 598 -GNVIDP 603 (912)
T ss_pred -CCcCCH
Confidence 677754
No 85
>cd00817 ValRS_core catalytic core domain of valyl-tRNA synthetases. Valine amino-acyl tRNA synthetase (ValRS) catalytic core domain. This enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. ValRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=82.66 E-value=1.6 Score=44.20 Aligned_cols=60 Identities=30% Similarity=0.381 Sum_probs=34.3
Q ss_pred cccceeecccchHHHHHHHHHHHHHhhhhhCCccccccCCCCCccccCC--ceecCCCCcccccCCCCCCcCCCCCCCCC
Q 018259 215 YQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVP--EPLIPPAGARVMSLTDGLSKMSKSAPSDQ 292 (359)
Q Consensus 215 ~~adivpvG~DQ~~hieLaRdia~k~n~~~g~~~~~~~~~~~~~~~~~P--~~l~~~~~~~l~sL~dg~~KMSKS~p~~~ 292 (359)
+.+|+...|.||...+-.. .++.-.. ..|. .| ..+.. ..+.++ +| +|||||. +
T Consensus 295 ~p~d~~~~G~D~~~~h~~~-~l~~~~~-~~g~---------------~p~~~v~~h---g~v~~~-~g-~KMSKS~---G 349 (382)
T cd00817 295 YPTSLLVTGHDIIFFWVAR-MIMRGLK-LTGK---------------LPFKEVYLH---GLVRDE-DG-RKMSKSL---G 349 (382)
T ss_pred CCCCeeeeecCcCchHHHH-HHHHHHH-hhCC---------------CchHHeEee---eeEECC-CC-CCccccC---C
Confidence 3479999999997544433 3333221 1121 23 22333 345444 56 7999997 6
Q ss_pred CeeecCC
Q 018259 293 SRINLLD 299 (359)
Q Consensus 293 s~I~L~D 299 (359)
|.|.+.|
T Consensus 350 n~v~~~d 356 (382)
T cd00817 350 NVIDPLD 356 (382)
T ss_pred CCCCHHH
Confidence 7887643
No 86
>PRK14536 cysS cysteinyl-tRNA synthetase; Provisional
Probab=82.53 E-value=7.9 Score=40.89 Aligned_cols=74 Identities=15% Similarity=0.078 Sum_probs=45.3
Q ss_pred CCceEE-EeeCCCCcchhhhHHHHHH--HHHHHhc--cCcEEEE--EeccceecC----------------CCCH-HHHH
Q 018259 77 VKKRIV-SGVQPTGSIHLGNYLGAIK--NWIALQN--SYETLFF--IVDLHAITL----------------PYDT-QQLS 132 (359)
Q Consensus 77 ~~~~i~-sGi~PTG~lHLGnyig~i~--~~~~lQ~--~~~~~i~--IADlhA~t~----------------~~~~-~~l~ 132 (359)
.++++| +|.-+-+.+||||....+. -+.++++ |++|+++ |.|+--++. ..++ +..+
T Consensus 22 ~~v~mYvCGpTvy~~~HiGhar~~v~~Dvl~R~l~~~G~~V~~v~NiTDv~hl~~~~De~ddKii~~A~~~g~~~~e~a~ 101 (490)
T PRK14536 22 GHVRLYGCGPTVYNYAHIGNLRTYVFQDTLRRTLHFLGYRVTHVMNITDVGHLTDDADSGEDKMVKSAQEHGKSVLEIAA 101 (490)
T ss_pred CceEEEeeCCccCCCcccchhHHHHHHHHHHHHHHhcCCceEEEEeeccccccccCCcCCChHHHHHHHHcCCCHHHHHH
Confidence 345555 4666668899999887552 2444433 7888765 677711111 1233 3344
Q ss_pred HHHHHHHHHHHHcCcCCC
Q 018259 133 KATRETAAIYLACGIDNS 150 (359)
Q Consensus 133 ~~~~~~~~~~lA~GlDp~ 150 (359)
+++..+.+++.++|+.+.
T Consensus 102 ~~~~~f~~d~~~Lni~~~ 119 (490)
T PRK14536 102 HYTAAFFRDTARLNIERP 119 (490)
T ss_pred HHHHHHHHHHHHcCCCCC
Confidence 556678888999998764
No 87
>COG0215 CysS Cysteinyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=82.17 E-value=0.92 Score=47.37 Aligned_cols=77 Identities=27% Similarity=0.225 Sum_probs=49.7
Q ss_pred hHHHhhhhhhcccceeecccc-hHHHHHHHHHHHHHhhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCc
Q 018259 205 PVLMASDILLYQSDFVPVGED-QKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSK 283 (359)
Q Consensus 205 PvLQAADIl~~~adivpvG~D-Q~~hieLaRdia~k~n~~~g~~~~~~~~~~~~~~~~~P~~l~~~~~~~l~sL~dg~~K 283 (359)
...|+.+.|--.-||--+|.| +-||+|- |+|+..- .+|.+.|.+ .-++. .+|+ . +| +|
T Consensus 210 CSaM~~~~LG~~~DIHgGG~DLiFPHHEN--EiAQsea-~~g~~~~a~------------yWmH~---G~l~-i-~g-eK 268 (464)
T COG0215 210 CSAMSTKYLGETFDIHGGGSDLIFPHHEN--EIAQSEA-ATGVKPFAK------------YWMHN---GFLN-I-DG-EK 268 (464)
T ss_pred HHHHHHHHhCCCcceecCcccccCCCccc--HHHHHHh-hhCCCccee------------EeEEc---ceee-e-cC-cC
Confidence 467888888889999999999 5688874 5555533 223221111 11333 3332 2 66 79
Q ss_pred CCCCCCCCCCeeecCC-----CHHHHH
Q 018259 284 MSKSAPSDQSRINLLD-----PKDVIA 305 (359)
Q Consensus 284 MSKS~p~~~s~I~L~D-----~p~~I~ 305 (359)
||||. +|.|.+.| +|++++
T Consensus 269 MSKSL---GNfiti~d~l~~~~p~~lR 292 (464)
T COG0215 269 MSKSL---GNFITVRDLLKKYDPEVLR 292 (464)
T ss_pred ccccc---CCeeEHHHHHhhcCHHHHH
Confidence 99997 78888876 666655
No 88
>PRK14900 valS valyl-tRNA synthetase; Provisional
Probab=81.76 E-value=1.2 Score=51.16 Aligned_cols=71 Identities=23% Similarity=0.360 Sum_probs=44.2
Q ss_pred cccceeecccchHHHHHHHHHHHHHhhhhhCCccccccCCCCCccccCC-c-eecCCCCcccccCCCCCCcCCCCCCCCC
Q 018259 215 YQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVP-E-PLIPPAGARVMSLTDGLSKMSKSAPSDQ 292 (359)
Q Consensus 215 ~~adivpvG~DQ~~hieLaRdia~k~n~~~g~~~~~~~~~~~~~~~~~P-~-~l~~~~~~~l~sL~dg~~KMSKS~p~~~ 292 (359)
+-+|+...|.||. ++=++|-++..+... | ..| . .+.+ .+|..- +| +|||||. |
T Consensus 490 ~P~d~~~~G~Dii-~~W~a~~l~~~~~~~-~---------------~~Pfk~V~~h---G~v~d~-~G-~KMSKSk---G 544 (1052)
T PRK14900 490 YPTSVMETGHDII-FFWVARMMMMGLHFM-G---------------EVPFRTVYLH---PMVRDE-KG-QKMSKTK---G 544 (1052)
T ss_pred CCchhhcccccHH-hHHHHHHHHHHHHhc-C---------------CCccceeEec---ccEECC-CC-CCccCCC---C
Confidence 4579999999998 456667777665432 1 235 2 3333 334442 56 7999997 6
Q ss_pred CeeecCC-----CHHHHHHHhhh
Q 018259 293 SRINLLD-----PKDVIANKIKR 310 (359)
Q Consensus 293 s~I~L~D-----~p~~I~kKI~r 310 (359)
|.|...| .+|.++-=+..
T Consensus 545 NvIdP~dvIe~yGaDalR~~L~~ 567 (1052)
T PRK14900 545 NVIDPLVITEQYGADALRFTLAA 567 (1052)
T ss_pred CCCCHHHHHHHhCcHHHHHHHHh
Confidence 8887655 44555544443
No 89
>cd00818 IleRS_core catalytic core domain of isoleucyl-tRNA synthetases. Isoleucine amino-acyl tRNA synthetases (IleRS) catalytic core domain . This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. IleRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=81.73 E-value=1.2 Score=44.44 Aligned_cols=17 Identities=41% Similarity=0.534 Sum_probs=13.3
Q ss_pred CCCCcCCCCCCCCCCeeecCC
Q 018259 279 DGLSKMSKSAPSDQSRINLLD 299 (359)
Q Consensus 279 dg~~KMSKS~p~~~s~I~L~D 299 (359)
+| +|||||. +|.|.+.|
T Consensus 296 ~g-~KmSKS~---gn~i~~~~ 312 (338)
T cd00818 296 DG-RKMSKSL---GNYVDPQE 312 (338)
T ss_pred CC-CCCCCCC---CCcCCHHH
Confidence 56 7999997 68887743
No 90
>COG0495 LeuS Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=81.61 E-value=4.9 Score=44.93 Aligned_cols=73 Identities=16% Similarity=0.164 Sum_probs=49.5
Q ss_pred CCceEEEee-CCCCcchhhhHHHHH--HHHHHHhc--cCcEEEEEeccceecCC---------CCH-HHHHHHHHHHHHH
Q 018259 77 VKKRIVSGV-QPTGSIHLGNYLGAI--KNWIALQN--SYETLFFIVDLHAITLP---------YDT-QQLSKATRETAAI 141 (359)
Q Consensus 77 ~~~~i~sGi-~PTG~lHLGnyig~i--~~~~~lQ~--~~~~~i~IADlhA~t~~---------~~~-~~l~~~~~~~~~~ 141 (359)
.++.|..-| -|||.+|+||..+-. .-+.++++ |++|++-++ |||+=.| .+| .....++.++..+
T Consensus 34 ~Kfyvl~mfPYpSG~LHvGH~r~Yti~Dv~aRykRm~GyNVL~PMG-wdafGlPae~~A~~~~~~P~~wt~~ni~~~k~q 112 (814)
T COG0495 34 EKFYVLVMFPYPSGALHVGHVRNYTIGDVIARYKRMQGYNVLHPMG-WDAFGLPAENAAIKIGTDPAKWTYYNIAYMKKQ 112 (814)
T ss_pred CceEEEeCCCCCCCCcccCccccccHHHHHHHHHHhcCCeecccCc-ccccCchHHHHHHHhCCChHHHHHHHHHHHHHH
Confidence 477888888 899999999966422 22344443 788877654 7776433 244 3455778888889
Q ss_pred HHHcCcCCC
Q 018259 142 YLACGIDNS 150 (359)
Q Consensus 142 ~lA~GlDp~ 150 (359)
+.++|+.-|
T Consensus 113 lk~lG~siD 121 (814)
T COG0495 113 LKSLGFSID 121 (814)
T ss_pred HHHhCCccc
Confidence 999987443
No 91
>PLN02563 aminoacyl-tRNA ligase
Probab=80.28 E-value=9 Score=43.73 Aligned_cols=74 Identities=16% Similarity=0.161 Sum_probs=48.6
Q ss_pred CceEEEee-CCCCc-chhhhHHHHHH--HHHHHhc--cCcEEEE-EeccceecC-------CCCH-HHHHHHHHHHHHHH
Q 018259 78 KKRIVSGV-QPTGS-IHLGNYLGAIK--NWIALQN--SYETLFF-IVDLHAITL-------PYDT-QQLSKATRETAAIY 142 (359)
Q Consensus 78 ~~~i~sGi-~PTG~-lHLGnyig~i~--~~~~lQ~--~~~~~i~-IADlhA~t~-------~~~~-~~l~~~~~~~~~~~ 142 (359)
++.|++|+ -|+|. +|+||..+.+. -+.++++ |++|++. --|-|.+-. ...+ +...+++..+.+.+
T Consensus 111 k~~v~~~~PYpnG~~lHiGH~~~y~~~DviaRy~Rm~G~~Vl~~~G~D~~GlPiE~~a~~~g~~p~~~~~~~i~~~~~q~ 190 (963)
T PLN02563 111 KFYVLDMFPYPSGAGLHVGHPEGYTATDILARYKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLKNIARFRSQL 190 (963)
T ss_pred CEEEEeCCCCCCCcccchhhHHHHHHHHHHHHHHHhcCCeecccccccccCcHHHHHHHHcCCChHHhHHHHHHHHHHHH
Confidence 35677786 67797 99999886552 3555654 7888654 446666632 1122 34557777888899
Q ss_pred HHcCc--CCCc
Q 018259 143 LACGI--DNSK 151 (359)
Q Consensus 143 lA~Gl--Dp~k 151 (359)
..+|+ |.++
T Consensus 191 ~~lG~s~DW~r 201 (963)
T PLN02563 191 KSLGFSYDWDR 201 (963)
T ss_pred HHhCcEeeCCC
Confidence 99995 6555
No 92
>cd00814 MetRS_core catalytic core domain of methioninyl-tRNA synthetases. Methionine tRNA synthetase (MetRS) catalytic core domain. This class I enzyme aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. MetRS, which consists of the core domain and an anti-codon binding domain, functions as a monomer. However, in some species the anti-codon binding domain is followed by an EMAP domain. In this case, MetRS functions as a homodimer. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. As a result of a deletion event, MetRS has a significantly shorter core domain insertion than IleRS, ValRS, and LeuR. Consequently, the MetRS insertion lacks the editing function.
Probab=79.78 E-value=2.1 Score=42.15 Aligned_cols=59 Identities=20% Similarity=0.269 Sum_probs=33.6
Q ss_pred ccceeecccchHHHHHHHHHHHHHhhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCcCCCCCCCCCCee
Q 018259 216 QSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRI 295 (359)
Q Consensus 216 ~adivpvG~DQ~~hieLaRdia~k~n~~~g~~~~~~~~~~~~~~~~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~~s~I 295 (359)
..++..+|.|+..++.+.- .|--+. .| ++.|..++.. ..+ .+ +| +|||||. ++.|
T Consensus 235 ~~~v~~~G~D~~~fh~~~~-pa~l~~--~~--------------~~~~~~~~~~--~~~-~~-~g-~kmSkS~---gn~i 289 (319)
T cd00814 235 PELVHFIGKDIIRFHAIYW-PAMLLG--AG--------------LPLPTRIVAH--GYL-TV-EG-KKMSKSR---GNVV 289 (319)
T ss_pred CceEEEEeechhhhhHHHH-HHHHHh--CC--------------CCCCcEeeee--eeE-EE-CC-eeecccC---Cccc
Confidence 4689999999998754321 111111 11 2345444431 223 33 56 6999997 6788
Q ss_pred ecCC
Q 018259 296 NLLD 299 (359)
Q Consensus 296 ~L~D 299 (359)
.+.|
T Consensus 290 ~~~~ 293 (319)
T cd00814 290 DPDD 293 (319)
T ss_pred CHHH
Confidence 7743
No 93
>PRK12418 cysteinyl-tRNA synthetase; Provisional
Probab=79.47 E-value=1.6 Score=44.57 Aligned_cols=69 Identities=13% Similarity=0.029 Sum_probs=41.1
Q ss_pred EEeeCCCCcchhhhHHHHHH--HHHHHhc--cCcEEEE-Eeccce-ec-C-----CCCHHH-HHHHHHHHHHHHHHcCc-
Q 018259 82 VSGVQPTGSIHLGNYLGAIK--NWIALQN--SYETLFF-IVDLHA-IT-L-----PYDTQQ-LSKATRETAAIYLACGI- 147 (359)
Q Consensus 82 ~sGi~PTG~lHLGnyig~i~--~~~~lQ~--~~~~~i~-IADlhA-~t-~-----~~~~~~-l~~~~~~~~~~~lA~Gl- 147 (359)
.+|-=|=+.+||||..+.+. -+.++++ |++|.+. =.|.|. -+ . ..++++ .++++..+.+++.++|+
T Consensus 14 vCGpTvY~~~HIGh~r~~V~~Dvl~R~lr~~G~~V~~V~nitD~ddKIi~~A~~~G~~~~e~a~~~~~~f~~d~~~Lni~ 93 (384)
T PRK12418 14 VCGITPYDATHLGHAATYLAFDLVNRVWRDAGHDVHYVQNVTDVDDPLLERAARDGVDWRDLAEREIALFREDMEALRVL 93 (384)
T ss_pred ecCCCCCCCCccchhHHHHHHHHHHHHHHHcCCceEEEEecCCcchHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 34555558899999887652 3444544 7787654 233332 11 1 124444 44566778888999996
Q ss_pred CCC
Q 018259 148 DNS 150 (359)
Q Consensus 148 Dp~ 150 (359)
.|+
T Consensus 94 ~~~ 96 (384)
T PRK12418 94 PPR 96 (384)
T ss_pred CCC
Confidence 454
No 94
>PLN02381 valyl-tRNA synthetase
Probab=78.96 E-value=2.7 Score=48.27 Aligned_cols=59 Identities=25% Similarity=0.354 Sum_probs=38.1
Q ss_pred cccceeecccchHHHHHHHHHHHHHhhhhhCCccccccCCCCCccccCC--ceecCCCCcccccCCCCCCcCCCCCCCCC
Q 018259 215 YQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVP--EPLIPPAGARVMSLTDGLSKMSKSAPSDQ 292 (359)
Q Consensus 215 ~~adivpvG~DQ~~hieLaRdia~k~n~~~g~~~~~~~~~~~~~~~~~P--~~l~~~~~~~l~sL~dg~~KMSKS~p~~~ 292 (359)
|-+|+..-|-||. ++=++|-++..+.. .|. .| ..+++ .+|-+- +| +|||||. |
T Consensus 607 ~P~d~~~~G~Dii-~~W~~rmi~~~~~~-~~~---------------~PFk~v~~h---G~V~D~-~G-~KMSKS~---G 661 (1066)
T PLN02381 607 YPTSVLETGHDIL-FFWVARMVMMGMQL-GGD---------------VPFRKVYLH---PMIRDA-HG-RKMSKSL---G 661 (1066)
T ss_pred CCCeeeeecchhh-hhHHHHHHHHHHHh-CCC---------------CchHHheec---ceEECC-CC-CCCCCCC---C
Confidence 5699999999998 55667777654431 121 24 23444 446554 56 7999997 6
Q ss_pred CeeecC
Q 018259 293 SRINLL 298 (359)
Q Consensus 293 s~I~L~ 298 (359)
|.|...
T Consensus 662 NvIdP~ 667 (1066)
T PLN02381 662 NVIDPL 667 (1066)
T ss_pred CCCCHH
Confidence 777543
No 95
>TIGR00392 ileS isoleucyl-tRNA synthetase. The isoleucyl tRNA synthetase (IleS) is a class I amino acyl-tRNA ligase and is particularly closely related to the valyl tRNA synthetase. This model may recognize IleS from every species, including eukaryotic cytosolic and mitochondrial forms.
Probab=78.59 E-value=2.5 Score=47.24 Aligned_cols=71 Identities=24% Similarity=0.344 Sum_probs=37.9
Q ss_pred cccceeecccchHH---HHHHHHHHHHHhhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCcCCCCCCCC
Q 018259 215 YQSDFVPVGEDQKQ---HLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSD 291 (359)
Q Consensus 215 ~~adivpvG~DQ~~---hieLaRdia~k~n~~~g~~~~~~~~~~~~~~~~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~ 291 (359)
+-+|+...|.||.. |..+-.-++ + +|. ..|..++. + .++... +| +|||||.
T Consensus 563 ~P~d~~i~G~Di~r~Wf~~~~~~~~~--~---~~~--------------~P~k~v~~-h-G~vl~~-~G-~KMSKSk--- 616 (861)
T TIGR00392 563 FPADFILEGSDQTRGWFYSSLAIGTA--L---FGQ--------------APYKNVIT-H-GFTLDE-KG-RKMSKSL--- 616 (861)
T ss_pred CCceEEEEecchhccHHHHHHHHHHH--H---cCC--------------CChHhhEe-c-ceEECC-CC-CCcCCCC---
Confidence 45799999999965 222222222 1 121 12233332 1 334433 56 7999997
Q ss_pred CCeeecCC-----CHHHHHHHhhhc
Q 018259 292 QSRINLLD-----PKDVIANKIKRC 311 (359)
Q Consensus 292 ~s~I~L~D-----~p~~I~kKI~rA 311 (359)
+|.|...| .+|.++-=+.++
T Consensus 617 GNvI~p~d~i~~yGaDalR~~ll~~ 641 (861)
T TIGR00392 617 GNVVDPLKVINKYGADILRLYVASS 641 (861)
T ss_pred CCCCCHHHHHHHcCHHHHHHHHHhC
Confidence 68887654 444444444444
No 96
>PLN02946 cysteine-tRNA ligase
Probab=78.44 E-value=11 Score=40.56 Aligned_cols=73 Identities=14% Similarity=-0.011 Sum_probs=42.8
Q ss_pred CCceEEE-eeCCCCcchhhhHHHHHH--HHHHHhc--cCcEEEE-Eeccce--ecC-----CCCHHH-HHHHHHHHHHHH
Q 018259 77 VKKRIVS-GVQPTGSIHLGNYLGAIK--NWIALQN--SYETLFF-IVDLHA--ITL-----PYDTQQ-LSKATRETAAIY 142 (359)
Q Consensus 77 ~~~~i~s-Gi~PTG~lHLGnyig~i~--~~~~lQ~--~~~~~i~-IADlhA--~t~-----~~~~~~-l~~~~~~~~~~~ 142 (359)
.++++|+ |.-+-+.+||||....+. -+.++.+ |++|.+. -.|.|. ++. ..++.+ .++++..+.+++
T Consensus 79 ~~v~~Y~CGpTvYd~~HIGhaR~~V~~Dvl~R~Lr~~Gy~V~~V~niTDiDDKIi~~A~~~g~~~~ela~~y~~~f~~d~ 158 (557)
T PLN02946 79 GKVGMYVCGVTAYDLSHIGHARVYVTFDVLYRYLKHLGYEVRYVRNFTDVDDKIIARANELGEDPISLSRRYCEEFLSDM 158 (557)
T ss_pred CceeEEEeCCccCCCCccccchhhHHHHHHHHHHHhcCCcEEEEECCCCccCHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 3455554 434448899999887552 3444443 7888653 223332 111 224444 446677888899
Q ss_pred HHcCcCC
Q 018259 143 LACGIDN 149 (359)
Q Consensus 143 lA~GlDp 149 (359)
.++|+.+
T Consensus 159 ~~LnI~~ 165 (557)
T PLN02946 159 AYLHCLP 165 (557)
T ss_pred HHCCCCC
Confidence 9999853
No 97
>PRK12300 leuS leucyl-tRNA synthetase; Reviewed
Probab=77.90 E-value=1.3 Score=49.89 Aligned_cols=59 Identities=31% Similarity=0.385 Sum_probs=34.3
Q ss_pred cccceeecccchHH-HHHHHHHHHHHhhhh--hCCccccccCCCCCccccCCceecCCCCcccccCCCCCCcCCCCCCCC
Q 018259 215 YQSDFVPVGEDQKQ-HLELTRELAERVNYL--YGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSD 291 (359)
Q Consensus 215 ~~adivpvG~DQ~~-hieLaRdia~k~n~~--~g~~~~~~~~~~~~~~~~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~ 291 (359)
|-+|+...|.||.. |+-+.. |++. ++. -+.|..++.. ..+.. +| +|||||.
T Consensus 529 ~P~D~~~~GkDii~~Hl~~~~-----~~~~a~~~~-------------~~~Pk~v~~h--G~vl~--~G-~KMSKS~--- 582 (897)
T PRK12300 529 YPVDWRHSGKDLIPNHLTFFI-----FNHVAIFPE-------------EKWPRGIVVN--GFVLL--EG-KKMSKSK--- 582 (897)
T ss_pred CCceEEEeeeccCccHHHHHH-----HHHHHhcCC-------------CccCcEEEEc--ceEEE--CC-ccccCcC---
Confidence 45799999999976 555542 2222 121 1235444331 33432 66 7999997
Q ss_pred CCeeecCC
Q 018259 292 QSRINLLD 299 (359)
Q Consensus 292 ~s~I~L~D 299 (359)
+|.|.+.|
T Consensus 583 GNvVdp~e 590 (897)
T PRK12300 583 GNVIPLRK 590 (897)
T ss_pred CCCCCHHH
Confidence 67876543
No 98
>PF00133 tRNA-synt_1: tRNA synthetases class I (I, L, M and V); InterPro: IPR002300 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. The class Ia aminoacyl-tRNA synthetases consist of the isoleucyl, methionyl, valyl, leucyl, cysteinyl, and arginyl-tRNA synthetases; the class Ib include the glutamyl and glutaminyl-tRNA synthetases, and the class Ic are the tyrosyl and tryptophanyl-tRNA synthetases [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 1OBC_A 2AJH_B 4ARI_A 2AJG_B 4AQ7_D 2AJI_B 4ARC_A 4AS1_A 1QU3_A 1QU2_A ....
Probab=77.35 E-value=1.5 Score=47.09 Aligned_cols=60 Identities=32% Similarity=0.371 Sum_probs=31.2
Q ss_pred cccceeecccchHHHHHHHHHHHHHhhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCcCCCCCCCCCCe
Q 018259 215 YQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSR 294 (359)
Q Consensus 215 ~~adivpvG~DQ~~hieLaRdia~k~n~~~g~~~~~~~~~~~~~~~~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~~s~ 294 (359)
|-+|+..-|.||....-. +-+..... .++... | +..+.+ .++... +| +|||||. +|.
T Consensus 513 ~P~D~~~~G~D~~~~W~~-~~l~~~~~-l~~~~p-----------f--k~v~~h---G~vld~-~G-~KMSKS~---GNv 569 (601)
T PF00133_consen 513 YPVDLYIEGKDQIRGWFQ-SSLFLSVA-LFGKEP-----------F--KKVITH---GFVLDE-DG-RKMSKSK---GNV 569 (601)
T ss_dssp SSBSEEEEEGGGTTTHHH-HHHHHHHH-HSSSTS-----------B--SEEEEE-----EEET-TS-SB-BTTT---TB-
T ss_pred CCcccccCCccchhhHHH-HhHhhccc-cccCCc-----------h--heeeec---cccccc-ce-eecccCC---Ccc
Confidence 568999999999765422 22222211 122211 2 334444 445554 66 7999997 677
Q ss_pred eec
Q 018259 295 INL 297 (359)
Q Consensus 295 I~L 297 (359)
|.+
T Consensus 570 i~p 572 (601)
T PF00133_consen 570 IDP 572 (601)
T ss_dssp -BH
T ss_pred cCH
Confidence 754
No 99
>PRK05729 valS valyl-tRNA synthetase; Reviewed
Probab=77.15 E-value=1.6 Score=48.85 Aligned_cols=60 Identities=30% Similarity=0.388 Sum_probs=37.9
Q ss_pred cccceeecccchHHHHHHHHHHHHHhhhhhCCccccccCCCCCccccCC--ceecCCCCcccccCCCCCCcCCCCCCCCC
Q 018259 215 YQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVP--EPLIPPAGARVMSLTDGLSKMSKSAPSDQ 292 (359)
Q Consensus 215 ~~adivpvG~DQ~~hieLaRdia~k~n~~~g~~~~~~~~~~~~~~~~~P--~~l~~~~~~~l~sL~dg~~KMSKS~p~~~ 292 (359)
|-+|+...|.||..+ =++|-++..+.. .| +.| ..+++ .++-.. +| +|||||. |
T Consensus 472 ~P~d~~~~G~Dii~~-W~a~~~~~~~~~-~~---------------~~Pfk~v~~h---G~v~d~-~G-~KMSKSl---G 526 (874)
T PRK05729 472 YPTSVLVTGFDIIFF-WVARMIMMGLHF-TG---------------QVPFKDVYIH---GLVRDE-QG-RKMSKSK---G 526 (874)
T ss_pred CCcccccccccccch-HHHHHHHHHHHh-cC---------------CCchhheEEe---eeEECC-CC-CCcccCC---C
Confidence 568999999999874 556666654431 11 235 33443 345444 66 7999997 6
Q ss_pred CeeecCC
Q 018259 293 SRINLLD 299 (359)
Q Consensus 293 s~I~L~D 299 (359)
|.|...|
T Consensus 527 NvIdP~d 533 (874)
T PRK05729 527 NVIDPLD 533 (874)
T ss_pred CCCCHHH
Confidence 7876654
No 100
>COG0018 ArgS Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=75.98 E-value=2.7 Score=45.23 Aligned_cols=70 Identities=23% Similarity=0.271 Sum_probs=47.7
Q ss_pred ccceeecccchHHHHHHHHHHHHHhhhhhCCccccccCCCCCccccCC-ceecCCCCcccccCCCCCCcCCCCCCCCCCe
Q 018259 216 QSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVP-EPLIPPAGARVMSLTDGLSKMSKSAPSDQSR 294 (359)
Q Consensus 216 ~adivpvG~DQ~~hieLaRdia~k~n~~~g~~~~~~~~~~~~~~~~~P-~~l~~~~~~~l~sL~dg~~KMSKS~p~~~s~ 294 (359)
+--|-.+|.||.+|+.-.+-+++.++.. .+ ..+++-. ..++...+| .||||-. ++.
T Consensus 335 d~~IyV~gadq~~~~~ql~~~l~~~g~~------------------~~~~~~~h~~-~~l~~~~~g-~kmStR~---G~~ 391 (577)
T COG0018 335 DKLIYVLGADQHGHFKQLKAVLELLGYG------------------PDKEVLLHQG-VGLVRGGEG-VKMSTRA---GNV 391 (577)
T ss_pred CEEEEEeCCcchhHHHHHHHHHHHhcCC------------------CccceEEEEE-EeeeECCCC-ccccccC---Cce
Confidence 3456679999999999999999998743 22 2233211 223333244 6899996 789
Q ss_pred eecCCCHHHHHHHh
Q 018259 295 INLLDPKDVIANKI 308 (359)
Q Consensus 295 I~L~D~p~~I~kKI 308 (359)
|.|.|=-+++.+|-
T Consensus 392 vtl~dllde~~era 405 (577)
T COG0018 392 VTLDDLLDEAGERA 405 (577)
T ss_pred EEHHHHHHHHHHHh
Confidence 99998777666433
No 101
>PLN02286 arginine-tRNA ligase
Probab=75.84 E-value=3.4 Score=44.34 Aligned_cols=69 Identities=19% Similarity=0.207 Sum_probs=44.1
Q ss_pred cceeecccchHHHHHHHHHHHHHhhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCcCCCCCCCCCCeee
Q 018259 217 SDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRIN 296 (359)
Q Consensus 217 adivpvG~DQ~~hieLaRdia~k~n~~~g~~~~~~~~~~~~~~~~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~~s~I~ 296 (359)
--|-.+|.||..|+.-...+++.++.... +. -..-+.+.. .+|-++ +| +||||.. |+.|.
T Consensus 329 ~~IyVvg~~q~~hf~~v~~~l~~lG~~~~-~~-----------~~~l~h~~~---g~V~~~-~g-~kmStR~---G~~v~ 388 (576)
T PLN02286 329 WIIYVTDVGQQQHFDMVFKAAKRAGWLPE-DT-----------YPRLEHVGF---GLVLGE-DG-KRFRTRS---GEVVR 388 (576)
T ss_pred EEEEEEeCcHHHHHHHHHHHHHHcCCCcc-cc-----------CCceEEEee---ccEECC-CC-CcccCCC---CCeeE
Confidence 45667999999999999999999873200 00 001112222 456334 66 6999885 78999
Q ss_pred cCCCHHHHH
Q 018259 297 LLDPKDVIA 305 (359)
Q Consensus 297 L~D~p~~I~ 305 (359)
|.|=-+++.
T Consensus 389 L~dlldea~ 397 (576)
T PLN02286 389 LVDLLDEAK 397 (576)
T ss_pred HHHHHHHHH
Confidence 987544433
No 102
>PF01406 tRNA-synt_1e: tRNA synthetases class I (C) catalytic domain; InterPro: IPR015803 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Cysteinyl-tRNA synthetase (6.1.1.16 from EC) is an alpha monomer and belongs to class Ia.; GO: 0000166 nucleotide binding, 0004817 cysteine-tRNA ligase activity, 0005524 ATP binding, 0006423 cysteinyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3SP1_B 3TQO_A 3C8Z_B 1LI5_B 1LI7_B 1U0B_B.
Probab=74.91 E-value=2.1 Score=42.39 Aligned_cols=73 Identities=15% Similarity=0.126 Sum_probs=38.5
Q ss_pred CceEE-EeeCCCCcchhhhHHHHHH--HHHHH-hc-cCcEEE--EEeccceecC------CCCHHH-HHHHHHHHHHHHH
Q 018259 78 KKRIV-SGVQPTGSIHLGNYLGAIK--NWIAL-QN-SYETLF--FIVDLHAITL------PYDTQQ-LSKATRETAAIYL 143 (359)
Q Consensus 78 ~~~i~-sGi~PTG~lHLGnyig~i~--~~~~l-Q~-~~~~~i--~IADlhA~t~------~~~~~~-l~~~~~~~~~~~l 143 (359)
..++| +|.-+=..+||||+...+. -+.+. +. |+++.+ =|.|+.--+. ..++.+ .+.++..+..++.
T Consensus 8 ~v~~Y~CGPTVYd~~HiGhaR~~v~~D~l~R~L~~~g~~V~~V~NiTDiDDKii~~A~~~g~~~~ela~~y~~~f~~dm~ 87 (300)
T PF01406_consen 8 KVRMYVCGPTVYDYAHIGHARTYVFFDVLRRYLEYLGYDVTYVMNITDIDDKIIKRAREEGVSPQELARRYEEEFFEDMK 87 (300)
T ss_dssp EEEEEEEEEBTTS--BHHHHHHHHHHHHHHHHHHHTT-EEEEEEEEB-SSHHHHHHHHHTTS-HHHHHHHHHHHHHHHHH
T ss_pred eEEEEcCCCCCCCCCCCcceeeeeeHHHHHHHHHHcCCeEEEEEeccccchHHHHHHHhccCCHHHHHHHHHHHHHHHHH
Confidence 34444 4666668899999887652 22222 22 777754 4777754442 224444 4456678888888
Q ss_pred HcCcCCC
Q 018259 144 ACGIDNS 150 (359)
Q Consensus 144 A~GlDp~ 150 (359)
++|+.+-
T Consensus 88 ~Lnv~~p 94 (300)
T PF01406_consen 88 ALNVLPP 94 (300)
T ss_dssp HTT----
T ss_pred HcCCCCC
Confidence 9998764
No 103
>TIGR03447 mycothiol_MshC cysteine--1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase. Members of this protein family are MshC, l-cysteine:1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase, an enzyme that uses ATP to ligate a Cys residue to a mycothiol precursor molecule, in the second to last step in mycothiol biosynthesis. This enzyme shows considerable homology to Cys--tRNA ligases, and many instances are misannotated as such. Mycothiol is found in Mycobacterium tuberculosis, Corynebacterium glutamicum, Streptomyces coelicolor, and various other members of the Actinobacteria. Mycothiol is an analog to glutathione.
Probab=74.69 E-value=2.3 Score=43.84 Aligned_cols=69 Identities=12% Similarity=-0.019 Sum_probs=42.9
Q ss_pred eEEEeeCCCCcchhhhHHHHH--HHHHHHhc--cCcEEEEEe-ccce--ecC-----CCCHHH-HHHHHHHHHHHHHHcC
Q 018259 80 RIVSGVQPTGSIHLGNYLGAI--KNWIALQN--SYETLFFIV-DLHA--ITL-----PYDTQQ-LSKATRETAAIYLACG 146 (359)
Q Consensus 80 ~i~sGi~PTG~lHLGnyig~i--~~~~~lQ~--~~~~~i~IA-DlhA--~t~-----~~~~~~-l~~~~~~~~~~~lA~G 146 (359)
...+|-=|=+.+||||..+.+ .-++++++ |++|.++.+ |.|. ++. ..++++ .++++..+.+++.++|
T Consensus 39 ~YvCGpTvY~~~HIGhart~V~~Dvl~R~lr~~G~~V~fV~nitD~dDKIi~~A~~~g~t~~ela~~y~~~f~~d~~~Ln 118 (411)
T TIGR03447 39 MYVCGITPYDATHLGHAATYLTFDLVNRVWRDAGHRVHYVQNVTDVDDPLFERAERDGVDWRELGTSQIDLFREDMEALR 118 (411)
T ss_pred EEEeCCccCCCcccccchHHHHHHHHHHHHHhcCCceEEeeCCCchhHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcC
Confidence 344576677899999988765 23555554 788865432 3332 111 234444 4456677888888998
Q ss_pred cC
Q 018259 147 ID 148 (359)
Q Consensus 147 lD 148 (359)
+.
T Consensus 119 i~ 120 (411)
T TIGR03447 119 VL 120 (411)
T ss_pred CC
Confidence 64
No 104
>PLN02843 isoleucyl-tRNA synthetase
Probab=74.56 E-value=5.1 Score=45.71 Aligned_cols=74 Identities=16% Similarity=0.214 Sum_probs=45.3
Q ss_pred CceEEEee-CCCCcchhhhHHHHHHH--HHHHhc--cCcEEE-EEeccceecC--------------CCCHHHHHHHHHH
Q 018259 78 KKRIVSGV-QPTGSIHLGNYLGAIKN--WIALQN--SYETLF-FIVDLHAITL--------------PYDTQQLSKATRE 137 (359)
Q Consensus 78 ~~~i~sGi-~PTG~lHLGnyig~i~~--~~~lQ~--~~~~~i-~IADlhA~t~--------------~~~~~~l~~~~~~ 137 (359)
++.+..|. -++|.+|+||.+..+.+ +++++. |+++.+ .--|-|.+-. ..+++++++.+++
T Consensus 33 ~f~i~~~PPy~nG~lHiGHa~~~~lkDii~Ry~rm~G~~v~~~pG~D~hGlpie~~vek~l~~~~~~~~~~~~f~~~c~~ 112 (974)
T PLN02843 33 SFTLHDGPPYANGDLHIGHALNKILKDFINRYQLLQGKKVHYVPGWDCHGLPIELKVLQSLDQEARKELTPIKLRAKAAK 112 (974)
T ss_pred CEEEeCCCCCCCCCcchhHHHHHHHHHHHHHHHHhcCCccccCCccCCCCcHHHHHHHHHhchhhhccCCHHHHHHHHHH
Confidence 45666665 57899999999876532 445554 788754 5556664421 1134555444443
Q ss_pred H--------HHHHHHcCc--CCCc
Q 018259 138 T--------AAIYLACGI--DNSK 151 (359)
Q Consensus 138 ~--------~~~~lA~Gl--Dp~k 151 (359)
+ ...+..+|+ |.++
T Consensus 113 ~~~~~~~~~~~~~~~lG~~~Dw~~ 136 (974)
T PLN02843 113 FAKKTVDTQRESFKRYGVWGDWEN 136 (974)
T ss_pred HHHHHHHHHHHHHHHhCCceecCC
Confidence 3 356678898 7776
No 105
>PRK13208 valS valyl-tRNA synthetase; Reviewed
Probab=74.41 E-value=4.3 Score=45.11 Aligned_cols=70 Identities=14% Similarity=0.202 Sum_probs=42.3
Q ss_pred CceEEEee-CCCCcchhhhHHHHHH--HHHHHhc--cCcEEE-EEeccceecC--------CCCH-------------HH
Q 018259 78 KKRIVSGV-QPTGSIHLGNYLGAIK--NWIALQN--SYETLF-FIVDLHAITL--------PYDT-------------QQ 130 (359)
Q Consensus 78 ~~~i~sGi-~PTG~lHLGnyig~i~--~~~~lQ~--~~~~~i-~IADlhA~t~--------~~~~-------------~~ 130 (359)
+..+.+|. -|+|.+||||.++.+. -+.++++ |+++.+ .--|-|.+-. ..++ +-
T Consensus 39 ~f~i~~ppPy~nG~lHiGH~~~~~~~D~~~R~~r~~G~~v~~~~G~D~~Glpie~~~ek~~g~~~~~~~~~~f~~~~~~~ 118 (800)
T PRK13208 39 VYSIDTPPPTVSGSLHIGHVFSYTHTDFIARYQRMRGYNVFFPQGWDDNGLPTERKVEKYYGIRKDDISREEFIELCREL 118 (800)
T ss_pred cEEEecCcCCCCCCccHHHHHhHHHHHHHHHHHHcCCCcccCCCCcCCCcchHHHHHHHHhCCCcccCCHHHHHHHHHHH
Confidence 45666643 6889999999987553 2555554 788865 4456665421 1111 12
Q ss_pred HHHHHHHHHHHHHHcCc
Q 018259 131 LSKATRETAAIYLACGI 147 (359)
Q Consensus 131 l~~~~~~~~~~~lA~Gl 147 (359)
..+++..+..++.++|+
T Consensus 119 ~~~~~~~~~~~~~~lg~ 135 (800)
T PRK13208 119 TDEDEKKFRELWRRLGL 135 (800)
T ss_pred HHHHHHHHHHHHHHhCe
Confidence 33445567778888886
No 106
>PTZ00419 valyl-tRNA synthetase-like protein; Provisional
Probab=73.85 E-value=4.4 Score=46.22 Aligned_cols=45 Identities=31% Similarity=0.285 Sum_probs=31.5
Q ss_pred CceEEEee-CCCCcchhhhHHHHHH--HHHHHhc--cCcEEE-EEecccee
Q 018259 78 KKRIVSGV-QPTGSIHLGNYLGAIK--NWIALQN--SYETLF-FIVDLHAI 122 (359)
Q Consensus 78 ~~~i~sGi-~PTG~lHLGnyig~i~--~~~~lQ~--~~~~~i-~IADlhA~ 122 (359)
++.|.+|. -|||.+|+||.++... -+.++++ |+++.+ .-.|-|++
T Consensus 61 ~f~i~~ppP~~~G~lHiGHa~~~~~~D~~~Ry~rm~G~~v~~~~G~D~~Gl 111 (995)
T PTZ00419 61 KFVIVLPPPNVTGYLHIGHALTGAIQDSLIRYHRMKGDETLWVPGTDHAGI 111 (995)
T ss_pred eEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHhcCCcccCCCCCCCCch
Confidence 46666666 6889999999987553 2556655 788765 55677766
No 107
>PRK13208 valS valyl-tRNA synthetase; Reviewed
Probab=73.83 E-value=3.1 Score=46.23 Aligned_cols=60 Identities=27% Similarity=0.362 Sum_probs=34.1
Q ss_pred cccceeecccchHHHHHHHHHHHHHhhhhhCCccccccCCCCCccccCC-ce-ecCCCCcccccCCCCCCcCCCCCCCCC
Q 018259 215 YQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVP-EP-LIPPAGARVMSLTDGLSKMSKSAPSDQ 292 (359)
Q Consensus 215 ~~adivpvG~DQ~~hieLaRdia~k~n~~~g~~~~~~~~~~~~~~~~~P-~~-l~~~~~~~l~sL~dg~~KMSKS~p~~~ 292 (359)
+-+|+...|.||... -+.+-++...-. +|. .| .. +++ ..+... +| +|||||. +
T Consensus 485 ~P~d~~~~G~Di~~~-w~~~~l~~~~~~-~~~---------------~Pf~~v~~h---g~v~~~-~G-~KMSKS~---G 539 (800)
T PRK13208 485 FPMDLRPQGHDIIRT-WLFYTILRAYLL-TGK---------------LPWKNIMIS---GMVLDP-DG-KKMSKSK---G 539 (800)
T ss_pred CCceEEEeecchhhh-HHHHHHHHHHHh-cCC---------------CCcceEEEe---eEEECC-CC-CCCCCCC---C
Confidence 358999999999853 233334333221 221 23 22 333 334443 56 7999997 6
Q ss_pred CeeecCC
Q 018259 293 SRINLLD 299 (359)
Q Consensus 293 s~I~L~D 299 (359)
|.|.+.|
T Consensus 540 N~i~p~~ 546 (800)
T PRK13208 540 NVVTPEE 546 (800)
T ss_pred CCCCHHH
Confidence 7887644
No 108
>TIGR00422 valS valyl-tRNA synthetase. The valyl-tRNA synthetase (ValS) is a class I amino acyl-tRNA ligase and is particularly closely related to the isoleucyl tRNA synthetase.
Probab=73.48 E-value=8 Score=43.34 Aligned_cols=45 Identities=24% Similarity=0.228 Sum_probs=30.5
Q ss_pred CceEEEee-CCCCcchhhhHHHHHH--HHHHHhc--cCcEEEE-Eecccee
Q 018259 78 KKRIVSGV-QPTGSIHLGNYLGAIK--NWIALQN--SYETLFF-IVDLHAI 122 (359)
Q Consensus 78 ~~~i~sGi-~PTG~lHLGnyig~i~--~~~~lQ~--~~~~~i~-IADlhA~ 122 (359)
++.|++|. -+||.+|+||.+.... -+.++++ |+++.+. --|-|.+
T Consensus 34 ~f~i~~ppPy~nG~lHiGH~~~~~~~D~~~Ry~rm~G~~vl~~~G~D~~Gl 84 (861)
T TIGR00422 34 PFCIDIPPPNVTGSLHIGHALNWSIQDIIARYKRMKGYNVLWLPGTDHAGI 84 (861)
T ss_pred eEEEEeCCCCCCCCCcHHHhHHHHHHHHHHHHHHhcCCcccCCCCcCcCCC
Confidence 46777766 6789999999886553 2555554 7888654 4466655
No 109
>TIGR00395 leuS_arch leucyl-tRNA synthetase, archaeal and cytosolic family. The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both archaeal and cytosolic eukaryotic leucyl-tRNA synthetases; the eubacterial and mitochondrial forms differ so substantially that some other tRNA ligases score higher by this model than does any eubacterial LeuS.
Probab=73.19 E-value=2.2 Score=48.36 Aligned_cols=73 Identities=27% Similarity=0.351 Sum_probs=41.7
Q ss_pred cccceeecccchHH-HHHHHHHHHHHhhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCcCCCCCCCCCC
Q 018259 215 YQSDFVPVGEDQKQ-HLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQS 293 (359)
Q Consensus 215 ~~adivpvG~DQ~~-hieLaRdia~k~n~~~g~~~~~~~~~~~~~~~~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~~s 293 (359)
|-+|+...|.||.+ |+.+. ++... ..++.. +-|..++.. ..+.. +| +|||||. +|
T Consensus 572 yP~D~~~~GkDii~~H~~~~--i~~~~-a~~~~~-------------~~Pk~i~~~--G~vl~--~G-~KMSKSl---GN 627 (938)
T TIGR00395 572 YPLDWRISGKDLIPNHLTFY--IFHHV-AIFPEK-------------FWPRGIVVN--GYVML--EG-KKMSKSK---GN 627 (938)
T ss_pred CCceEEEEeeccccchHHHH--HHHHH-HcCCcc-------------ccCcEEEEe--ceEEe--CC-ccccCcC---CC
Confidence 45799999999976 65554 22211 111111 125433331 23332 66 7999997 78
Q ss_pred eeecCC-----CHHHHHHHhhhc
Q 018259 294 RINLLD-----PKDVIANKIKRC 311 (359)
Q Consensus 294 ~I~L~D-----~p~~I~kKI~rA 311 (359)
.|.+.| .++.++==+..+
T Consensus 628 vI~p~d~i~~yGaDalRl~Ll~~ 650 (938)
T TIGR00395 628 VLTLEQAVEKFGADVARLYIADA 650 (938)
T ss_pred CCCHHHHHHHcChHHHHHHHHhc
Confidence 887765 556666555554
No 110
>TIGR00422 valS valyl-tRNA synthetase. The valyl-tRNA synthetase (ValS) is a class I amino acyl-tRNA ligase and is particularly closely related to the isoleucyl tRNA synthetase.
Probab=72.56 E-value=3.1 Score=46.61 Aligned_cols=60 Identities=35% Similarity=0.443 Sum_probs=36.1
Q ss_pred cccceeecccchHHHHHHHHHHHHHhhhhhCCccccccCCCCCccccCC--ceecCCCCcccccCCCCCCcCCCCCCCCC
Q 018259 215 YQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVP--EPLIPPAGARVMSLTDGLSKMSKSAPSDQ 292 (359)
Q Consensus 215 ~~adivpvG~DQ~~hieLaRdia~k~n~~~g~~~~~~~~~~~~~~~~~P--~~l~~~~~~~l~sL~dg~~KMSKS~p~~~ 292 (359)
+-+|+...|.||.... ++|-++.-.. ..| +.| ..+++ ..+... +| +|||||. +
T Consensus 477 ~P~d~~~~G~Dii~fw-~~~~~~~~~~-~~~---------------~~Pfk~v~~h---G~v~d~-~G-~KMSKS~---G 531 (861)
T TIGR00422 477 YPTDLLVTGYDIIFFW-VARMIFRSLA-LTG---------------QVPFKEVYIH---GLVRDE-QG-RKMSKSL---G 531 (861)
T ss_pred CCcceeecchhhhhHH-HHHHHHHHHH-hcC---------------CCchheEEEe---eEEECC-CC-CCCCcCC---C
Confidence 5689999999997764 4444443221 111 124 33443 345443 56 7999997 6
Q ss_pred CeeecCC
Q 018259 293 SRINLLD 299 (359)
Q Consensus 293 s~I~L~D 299 (359)
|.|.+.|
T Consensus 532 N~i~p~~ 538 (861)
T TIGR00422 532 NVIDPLD 538 (861)
T ss_pred CCCCHHH
Confidence 7887654
No 111
>PLN02943 aminoacyl-tRNA ligase
Probab=71.98 E-value=3.3 Score=47.07 Aligned_cols=71 Identities=23% Similarity=0.344 Sum_probs=42.6
Q ss_pred cccceeecccchHHHHHHHHHHHHHhhhhhCCccccccCCCCCccccCC--ceecCCCCcccccCCCCCCcCCCCCCCCC
Q 018259 215 YQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVP--EPLIPPAGARVMSLTDGLSKMSKSAPSDQ 292 (359)
Q Consensus 215 ~~adivpvG~DQ~~hieLaRdia~k~n~~~g~~~~~~~~~~~~~~~~~P--~~l~~~~~~~l~sL~dg~~KMSKS~p~~~ 292 (359)
|-+|+...|.||. .+=++|-++.-... .| +.| ..+++ ..+... +| +|||||. |
T Consensus 535 yP~dl~~~G~Dii-~fW~a~m~~~~~~~-~~---------------~~Pf~~v~~h---g~v~~~-~G-~KMSKS~---G 589 (958)
T PLN02943 535 YPTTVLETGHDIL-FFWVARMVMMGIEF-TG---------------TVPFSYVYLH---GLIRDS-QG-RKMSKTL---G 589 (958)
T ss_pred CCCeEEEEeehHH-HHHHHHHHHhhhhh-cC---------------CCChheEEEe---ccEECC-CC-CcccCcC---C
Confidence 5589999999998 45667766642221 11 234 23443 334443 56 7999997 6
Q ss_pred CeeecCC-----CHHHHHHHhhh
Q 018259 293 SRINLLD-----PKDVIANKIKR 310 (359)
Q Consensus 293 s~I~L~D-----~p~~I~kKI~r 310 (359)
|.|...| .++.++-=+..
T Consensus 590 N~i~p~~~i~~ygaDalR~~l~~ 612 (958)
T PLN02943 590 NVIDPLDTIKEFGTDALRFTLAL 612 (958)
T ss_pred CCCCHHHHHHhcCChHHHHHHHh
Confidence 7887655 45555544443
No 112
>PRK12267 methionyl-tRNA synthetase; Reviewed
Probab=70.97 E-value=2.1 Score=46.32 Aligned_cols=70 Identities=19% Similarity=0.240 Sum_probs=39.4
Q ss_pred ccceeecccchHHHHHHHHHHHHHhhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCcCCCCCCCCCCee
Q 018259 216 QSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRI 295 (359)
Q Consensus 216 ~adivpvG~DQ~~hieLaRdia~k~n~~~g~~~~~~~~~~~~~~~~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~~s~I 295 (359)
.+|+...|.||..++-+-= .-+-.-.| ++.|..++.. ..+. + +| +|||||. +|.|
T Consensus 254 p~~~~~~GkDii~fH~i~w---pa~l~~~~--------------~~~p~~v~~h--g~l~-~-eg-~KMSKS~---GN~i 308 (648)
T PRK12267 254 PADVHLVGKDILRFHAIYW---PIMLMALG--------------LPLPKKVFAH--GWWL-M-KD-GKMSKSK---GNVV 308 (648)
T ss_pred ccceEEEeeeecchhHHHH---HHHHHhCC--------------CCCCcEEEec--ceEE-E-CC-ceecccC---Cccc
Confidence 4688999999987544321 01110011 3456655431 2232 2 56 7999997 6888
Q ss_pred ecCC-----CHHHHHHHhhh
Q 018259 296 NLLD-----PKDVIANKIKR 310 (359)
Q Consensus 296 ~L~D-----~p~~I~kKI~r 310 (359)
...| ++|.++--+.+
T Consensus 309 ~p~d~l~~ygaD~lR~~L~~ 328 (648)
T PRK12267 309 DPEELVDRYGLDALRYYLLR 328 (648)
T ss_pred CHHHHHHHcCCcHHHHHHHh
Confidence 7655 45555554544
No 113
>COG0525 ValS Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=67.01 E-value=3.7 Score=46.10 Aligned_cols=37 Identities=27% Similarity=0.278 Sum_probs=26.6
Q ss_pred CCCcchhhhHHHH--HHHHHHHhc--cCcEEEEEeccceec
Q 018259 87 PTGSIHLGNYLGA--IKNWIALQN--SYETLFFIVDLHAIT 123 (359)
Q Consensus 87 PTG~lHLGnyig~--i~~~~~lQ~--~~~~~i~IADlhA~t 123 (359)
+||.+|+||.+.. +.-.+++++ |++++++-+=.||=+
T Consensus 44 VTG~LHmGHAl~~tl~D~l~RykRM~G~~vl~~pG~DhAGI 84 (877)
T COG0525 44 VTGSLHMGHALNYTLQDILARYKRMRGYNVLWPPGTDHAGI 84 (877)
T ss_pred CCCcccchhhhhHHHHHHHHHHHHcCCCeeecCCCCCCCCc
Confidence 5999999998742 234556655 899988877777654
No 114
>PTZ00419 valyl-tRNA synthetase-like protein; Provisional
Probab=66.85 E-value=5.4 Score=45.48 Aligned_cols=59 Identities=25% Similarity=0.348 Sum_probs=37.0
Q ss_pred cccceeecccchHHHHHHHHHHHHHhhhhhCCccccccCCCCCccccCC--ceecCCCCcccccCCCCCCcCCCCCCCCC
Q 018259 215 YQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVP--EPLIPPAGARVMSLTDGLSKMSKSAPSDQ 292 (359)
Q Consensus 215 ~~adivpvG~DQ~~hieLaRdia~k~n~~~g~~~~~~~~~~~~~~~~~P--~~l~~~~~~~l~sL~dg~~KMSKS~p~~~ 292 (359)
|-+|+...|.||.. +=++|-++..+.. .| ..| ..+++ .+|-+- +| +|||||. |
T Consensus 537 ~P~d~~~~G~Dii~-~W~arm~~~~~~~-~~---------------~~Pfk~v~~H---G~v~d~-~G-~KMSKSl---G 591 (995)
T PTZ00419 537 FPTSLLETGSDILF-FWVARMVMMSLHL-TD---------------KLPFKTVFLH---AMVRDS-QG-EKMSKSK---G 591 (995)
T ss_pred CCCcEEEechhHHh-HHHHHHHHHHHHh-cC---------------CCChHHHhcc---ceEECC-CC-CCcccCC---C
Confidence 56899999999876 5566666655431 11 235 23444 445553 56 7999997 6
Q ss_pred CeeecC
Q 018259 293 SRINLL 298 (359)
Q Consensus 293 s~I~L~ 298 (359)
|.|...
T Consensus 592 NvIdP~ 597 (995)
T PTZ00419 592 NVIDPL 597 (995)
T ss_pred CcCChH
Confidence 777443
No 115
>KOG0435 consensus Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=66.78 E-value=7.6 Score=42.57 Aligned_cols=73 Identities=22% Similarity=0.251 Sum_probs=46.1
Q ss_pred CCceEEEee-CCCCcchhhhHHHH-H-HHHHHHhc--cCcEEEEEeccceecCCC---------C-HHHHHHHHHHHHHH
Q 018259 77 VKKRIVSGV-QPTGSIHLGNYLGA-I-KNWIALQN--SYETLFFIVDLHAITLPY---------D-TQQLSKATRETAAI 141 (359)
Q Consensus 77 ~~~~i~sGi-~PTG~lHLGnyig~-i-~~~~~lQ~--~~~~~i~IADlhA~t~~~---------~-~~~l~~~~~~~~~~ 141 (359)
.+.+|++-| -|||.+|+||...- | .-..++|+ |++|+=-++ |.|+=.|. + .....+|+..+...
T Consensus 57 k~KYiLsMFPYPSG~LHiGHvRVYTIsD~laRf~rm~GynVihPMG-WDaFGLPAENAAiergv~P~sWT~~NI~~Mk~Q 135 (876)
T KOG0435|consen 57 KKKYILSMFPYPSGALHIGHVRVYTISDILARFYRMKGYNVIHPMG-WDAFGLPAENAAIERGVHPASWTINNIAKMKQQ 135 (876)
T ss_pred CCceEEEecCCCCCcccccceEEEEehHHHHHHHHhcCceeecCCc-ccccCCchhhHHHhcCCCchhhhHHHHHHHHHH
Confidence 445999999 89999999995421 1 34566765 788764433 44443221 1 23455667777777
Q ss_pred HHHcCc--CCC
Q 018259 142 YLACGI--DNS 150 (359)
Q Consensus 142 ~lA~Gl--Dp~ 150 (359)
+...|+ |.+
T Consensus 136 l~~lg~~FDWd 146 (876)
T KOG0435|consen 136 LKSLGISFDWD 146 (876)
T ss_pred HHHcCcccccc
Confidence 887775 444
No 116
>PRK06039 ileS isoleucyl-tRNA synthetase; Reviewed
Probab=66.60 E-value=5 Score=45.71 Aligned_cols=15 Identities=33% Similarity=0.636 Sum_probs=12.4
Q ss_pred cccceeecccchHHH
Q 018259 215 YQSDFVPVGEDQKQH 229 (359)
Q Consensus 215 ~~adivpvG~DQ~~h 229 (359)
+-+|+..-|.||...
T Consensus 544 ~Pad~~~~G~Di~r~ 558 (975)
T PRK06039 544 FPADFIVEGIDQTRG 558 (975)
T ss_pred CCceEEEechhhHhh
Confidence 568999999999753
No 117
>PLN02959 aminoacyl-tRNA ligase
Probab=66.28 E-value=5 Score=46.29 Aligned_cols=61 Identities=25% Similarity=0.304 Sum_probs=34.5
Q ss_pred cccceeecccchHHHHHHHHHHHHHhhhhhCCccccccCCCCCccccCCce-ecCCCCcccccCCCCCCcCCCCCCCCCC
Q 018259 215 YQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEP-LIPPAGARVMSLTDGLSKMSKSAPSDQS 293 (359)
Q Consensus 215 ~~adivpvG~DQ~~hieLaRdia~k~n~~~g~~~~~~~~~~~~~~~~~P~~-l~~~~~~~l~sL~dg~~KMSKS~p~~~s 293 (359)
|=+|+..-|.||...+- ..-+..... .+|.. +-|.. +++ ..|. + +| +|||||. ||
T Consensus 670 yP~Dl~~sG~Dii~~wl-~~~l~~~~a-l~~~~-------------P~p~~v~v~---G~V~-~-~G-~KMSKSk---GN 725 (1084)
T PLN02959 670 YPFDLRVSGKDLIQNHL-TFAIYNHTA-IWAEE-------------HWPRGFRCN---GHLM-L-NS-EKMSKST---GN 725 (1084)
T ss_pred CCCeEEEecccHHHHHH-HHHHHHHHH-hcCCC-------------CCCceEEEc---cEEe-c-CC-cCccccC---CC
Confidence 56899999999977653 232222111 12221 22432 333 2343 3 67 7999997 67
Q ss_pred eeecCC
Q 018259 294 RINLLD 299 (359)
Q Consensus 294 ~I~L~D 299 (359)
.|.+.|
T Consensus 726 vI~p~d 731 (1084)
T PLN02959 726 FLTLRQ 731 (1084)
T ss_pred cCCHHH
Confidence 876654
No 118
>PRK13804 ileS isoleucyl-tRNA synthetase; Provisional
Probab=66.16 E-value=4.4 Score=46.07 Aligned_cols=16 Identities=31% Similarity=0.513 Sum_probs=13.0
Q ss_pred hhcccceeecccchHH
Q 018259 213 LLYQSDFVPVGEDQKQ 228 (359)
Q Consensus 213 l~~~adivpvG~DQ~~ 228 (359)
+.+-+|+...|.||..
T Consensus 580 ~~~PaD~~~eG~Di~r 595 (961)
T PRK13804 580 LKWPADLYLEGSDQHR 595 (961)
T ss_pred cCCCceEEEEEccccc
Confidence 3456899999999974
No 119
>PLN02660 pantoate--beta-alanine ligase
Probab=65.30 E-value=30 Score=34.14 Aligned_cols=72 Identities=19% Similarity=0.300 Sum_probs=52.2
Q ss_pred cccceeecccchHHHHHHHHHHHHHhhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCcCCCCCCCCCCe
Q 018259 215 YQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSR 294 (359)
Q Consensus 215 ~~adivpvG~DQ~~hieLaRdia~k~n~~~g~~~~~~~~~~~~~~~~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~~s~ 294 (359)
.++|....|+--.|-+.+.|.+.+.+|. |.-++.- +.+-- .||. =||+- .
T Consensus 145 v~P~~a~FGeKD~QQl~vIrrmV~dL~~--------------------~v~I~~~--ptvRe-~dGL-A~SSR------N 194 (284)
T PLN02660 145 VEPDVAVFGKKDYQQWRVIRRMVRDLDF--------------------DIEVVGS--PIVRE-ADGL-AMSSR------N 194 (284)
T ss_pred cCCCEeeecchHHHHHHHHHHHHHHcCC--------------------CceEEee--CceEC-CCCC-eeccc------c
Confidence 3899999999999999999999999882 4333331 22322 3663 78865 4
Q ss_pred eecCCCHHHHHHHhhhccCCCC
Q 018259 295 INLLDPKDVIANKIKRCKTDSS 316 (359)
Q Consensus 295 I~L~D~p~~I~kKI~rA~Td~~ 316 (359)
.||++...+....|-++.+...
T Consensus 195 ~yLs~~eR~~A~~l~~~L~~~~ 216 (284)
T PLN02660 195 VRLSAEEREKALSISRSLARAE 216 (284)
T ss_pred ccCCHHHHHHHHHHHHHHHHHH
Confidence 6888888888888887766543
No 120
>cd02168 NMNAT_Nudix Nicotinamide/nicotinate mononucleotide adenylyltransferase of bifunctional proteins, also containing a Nudix hydrolase domain. N-terminal NMNAT (Nicotinamide/nicotinate mononucleotide adenylyltransferase) domain of a novel bifunctional enzyme endowed with NMN adenylyltransferase and Nudix hydrolase activities. This domain is highly homologous to the archeal NMN adenyltransferase that catalyzes NAD synthesis from NMN and ATP. NMNAT is an essential enzyme in the biosynthesis of NAD(+) and NADP(+). Nicotinamide-nucleotide adenylyltransferase synthesizes NAD via the salvage pathway, while nicotinate-nucleotide adenylyltransferase synthesizes the immediate precursor of NAD via the de novo pathway. The C-terminal domain of this enzyme shares homology with the archaeal ADP-ribose pyrophosphatase, a member of the 'Nudix' hydrolase family.
Probab=65.05 E-value=18 Score=32.93 Aligned_cols=67 Identities=12% Similarity=0.160 Sum_probs=36.0
Q ss_pred eCCCCcchhhhHHHHHHHHHHHhccCcEEEEEeccce-ec--CCCCHHHHHHHHHHHHHHHHHcCcCCCccEEEEccCc
Q 018259 85 VQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHA-IT--LPYDTQQLSKATRETAAIYLACGIDNSKASVFVQSHV 160 (359)
Q Consensus 85 i~PTG~lHLGnyig~i~~~~~lQ~~~~~~i~IADlhA-~t--~~~~~~~l~~~~~~~~~~~lA~GlDp~kt~i~~qS~~ 160 (359)
|+| +|+||.-. ++...+ ..-++++.|+.-.. -+ ++.+.++-.+.++.. +...|+|.+++.|.-=.|.
T Consensus 8 F~P---~H~GHl~~-i~~a~~--~~~~vii~i~s~~~~~~~~~p~~~~eR~~mi~~~---~~~~~~~~~rv~i~pi~D~ 77 (181)
T cd02168 8 FQP---FHNGHLAV-VLIALE--KAKKVIILIGSARTARNIKNPWTSEEREVMIEAA---LSDAGADLARVHFRPLRDH 77 (181)
T ss_pred cCC---CCHHHHHH-HHHHHH--HCCeEEEEeCCCCCCCCCCCCcCHHHHHHHHHHH---HhccCCCcceEEEEecCCC
Confidence 466 89999744 344422 21256676755522 12 233444444444333 3346899988776654443
No 121
>COG0018 ArgS Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=64.30 E-value=6.8 Score=42.22 Aligned_cols=42 Identities=24% Similarity=0.433 Sum_probs=30.4
Q ss_pred EEEeeCCCCcchhhhHHHHH--HHHHHHhc--cCcE--EEEEecccee
Q 018259 81 IVSGVQPTGSIHLGNYLGAI--KNWIALQN--SYET--LFFIVDLHAI 122 (359)
Q Consensus 81 i~sGi~PTG~lHLGnyig~i--~~~~~lQ~--~~~~--~i~IADlhA~ 122 (359)
=||.--|||+||+||..+++ .-+.++-+ |++| ...|.||=..
T Consensus 122 E~sSaNptkplHiGHlR~aiiGDsLaril~~~Gy~V~r~~yvnD~G~Q 169 (577)
T COG0018 122 EYSSANPTGPLHIGHLRNAIIGDSLARILEFLGYDVTRENYVNDWGTQ 169 (577)
T ss_pred EEeCCCCCCCcccchhhhhHHHHHHHHHHHHcCCCeeEEeeECcHHHH
Confidence 36777999999999988776 23444544 7887 4788998443
No 122
>PLN02843 isoleucyl-tRNA synthetase
Probab=62.99 E-value=5.3 Score=45.54 Aligned_cols=16 Identities=38% Similarity=0.590 Sum_probs=13.5
Q ss_pred hhcccceeecccchHH
Q 018259 213 LLYQSDFVPVGEDQKQ 228 (359)
Q Consensus 213 l~~~adivpvG~DQ~~ 228 (359)
+.+-+|+...|.||..
T Consensus 561 ~~~PaDl~~eG~Di~r 576 (974)
T PLN02843 561 LSYPADLYLEGSDQHR 576 (974)
T ss_pred cCCCceeeeeeccccc
Confidence 4566999999999986
No 123
>PRK12451 arginyl-tRNA synthetase; Reviewed
Probab=62.52 E-value=8.4 Score=41.20 Aligned_cols=63 Identities=19% Similarity=0.239 Sum_probs=43.0
Q ss_pred ccceeecccchHHHHHHHHHHHHHhhhhhCCccccccCCCCCccccCCc-eecCCCCcccccCCCCCCcCCCCCCCCCCe
Q 018259 216 QSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPE-PLIPPAGARVMSLTDGLSKMSKSAPSDQSR 294 (359)
Q Consensus 216 ~adivpvG~DQ~~hieLaRdia~k~n~~~g~~~~~~~~~~~~~~~~~P~-~l~~~~~~~l~sL~dg~~KMSKS~p~~~s~ 294 (359)
+--|-.+|.||..|+.-...+++.++... +. ..+... .+| .+ +| +||||.. |+.
T Consensus 325 d~~IyV~g~dq~~h~~~l~~~~~~lg~~~------------------~~~l~h~~~-g~V-~~-~g-~kmStR~---G~~ 379 (562)
T PRK12451 325 DKALYVVGPEQSLHFNQFFTVLKKLGYTW------------------VDGMEHVPF-GLI-LK-DG-KKMSTRK---GRV 379 (562)
T ss_pred CEEEEEeCCcHHHHHHHHHHHHHHcCCCc------------------ccCeEEEee-eeE-ec-CC-CCCcCCC---CCe
Confidence 35577899999999999999999997321 11 111122 234 34 55 5999996 789
Q ss_pred eecCCCHHH
Q 018259 295 INLLDPKDV 303 (359)
Q Consensus 295 I~L~D~p~~ 303 (359)
|.|.|=-++
T Consensus 380 v~l~dLlde 388 (562)
T PRK12451 380 VLLEEVLEE 388 (562)
T ss_pred eEHHHHHHH
Confidence 999874444
No 124
>TIGR00398 metG methionyl-tRNA synthetase. The methionyl-tRNA synthetase (metG) is a class I amino acyl-tRNA ligase. This model appears to recognize the methionyl-tRNA synthetase of every species, including eukaryotic cytosolic and mitochondrial forms. The UPGMA difference tree calculated after search and alignment according to this model shows an unusual deep split between two families of MetG. One family contains forms from the Archaea, yeast cytosol, spirochetes, and E. coli, among others. The other family includes forms from yeast mitochondrion, Synechocystis sp., Bacillus subtilis, the Mycoplasmas, Aquifex aeolicus, and Helicobacter pylori. The E. coli enzyme is homodimeric, although monomeric forms can be prepared that are fully active. Activity of this enzyme in bacteria includes aminoacylation of fMet-tRNA with Met; subsequent formylation of the Met to fMet is catalyzed by a separate enzyme. Note that the protein from Aquifex aeolicus is split into an alpha (large) and beta (sma
Probab=61.78 E-value=6 Score=41.56 Aligned_cols=55 Identities=18% Similarity=0.293 Sum_probs=32.1
Q ss_pred eeecccchHHHHHHHH-HHHHHhhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCcCCCCCCCCCCeeec
Q 018259 219 FVPVGEDQKQHLELTR-ELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINL 297 (359)
Q Consensus 219 ivpvG~DQ~~hieLaR-dia~k~n~~~g~~~~~~~~~~~~~~~~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~~s~I~L 297 (359)
+.+.|.|...++-+-- -+..-.+ ++.|..++.. ..+. + +| +|||||. ++.|.+
T Consensus 285 v~~~G~Di~~~h~~~~~a~l~~~~------------------~~~~~~~~~~--g~v~-~-~g-~KmSKS~---Gn~i~~ 338 (530)
T TIGR00398 285 IHFIGKDIVRFHTIYWPAMLMGLG------------------LPLPTQVFSH--GYLT-V-EG-GKMSKSL---GNVVDP 338 (530)
T ss_pred EEEEecccchhHHHHHHHHHHhCC------------------CCCCCEEEee--ccEE-E-CC-ceecccC---CceecH
Confidence 8899999988653321 1221111 2346555542 3342 3 55 7999997 688866
Q ss_pred CC
Q 018259 298 LD 299 (359)
Q Consensus 298 ~D 299 (359)
.|
T Consensus 339 ~d 340 (530)
T TIGR00398 339 SD 340 (530)
T ss_pred HH
Confidence 54
No 125
>PLN02563 aminoacyl-tRNA ligase
Probab=61.49 E-value=6 Score=45.11 Aligned_cols=27 Identities=19% Similarity=0.163 Sum_probs=22.2
Q ss_pred cccceeecccch-HHHHHHHHHHHHHhh
Q 018259 215 YQSDFVPVGEDQ-KQHLELTRELAERVN 241 (359)
Q Consensus 215 ~~adivpvG~DQ-~~hieLaRdia~k~n 241 (359)
+-+|+..+|.|| .-|+..+|=....+.
T Consensus 615 ~PvD~yigG~dhailHLlY~Rfw~~~l~ 642 (963)
T PLN02563 615 MPVDLYVGGAEHAVLHLLYARFWHKVLY 642 (963)
T ss_pred CCCcEeeccHHHHhhHhHHHHHHHHHHH
Confidence 569999999999 578888888876654
No 126
>PRK12268 methionyl-tRNA synthetase; Reviewed
Probab=61.44 E-value=4.7 Score=42.61 Aligned_cols=58 Identities=21% Similarity=0.284 Sum_probs=32.8
Q ss_pred ceeecccchHHHHHH-HHHHHHHhhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCcCCCCCCCCCCeee
Q 018259 218 DFVPVGEDQKQHLEL-TRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRIN 296 (359)
Q Consensus 218 divpvG~DQ~~hieL-aRdia~k~n~~~g~~~~~~~~~~~~~~~~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~~s~I~ 296 (359)
++...|.|+..++.+ ---+..-.+. .++.|..++.. ..+. + +| +|||||. +|.|.
T Consensus 289 ~~~~~G~D~~~Fh~~~~p~~l~~~~~----------------~~~~P~~v~~~--G~v~-~-~G-~KMSKS~---GN~I~ 344 (556)
T PRK12268 289 SYYFIGKDNIPFHSIIWPAMLLGSGE----------------PLKLPDEIVSS--EYLT-L-EG-GKFSKSR---GWGIW 344 (556)
T ss_pred EEEEEeeccCcchHHHHHHHHHhcCC----------------CCCCCCEeecc--CCEE-E-CC-eeeccCC---CcccC
Confidence 488889999764432 2222221110 13456555542 3343 3 66 7999997 67876
Q ss_pred cCC
Q 018259 297 LLD 299 (359)
Q Consensus 297 L~D 299 (359)
..|
T Consensus 345 p~d 347 (556)
T PRK12268 345 VDD 347 (556)
T ss_pred HHH
Confidence 654
No 127
>PTZ00399 cysteinyl-tRNA-synthetase; Provisional
Probab=60.04 E-value=4.5 Score=44.12 Aligned_cols=92 Identities=23% Similarity=0.263 Sum_probs=55.0
Q ss_pred hHHHhhhhhhcccceeecccch-HHHHHHHHHHHHHhhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCc
Q 018259 205 PVLMASDILLYQSDFVPVGEDQ-KQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSK 283 (359)
Q Consensus 205 PvLQAADIl~~~adivpvG~DQ-~~hieLaRdia~k~n~~~g~~~~~~~~~~~~~~~~~P~~l~~~~~~~l~sL~dg~~K 283 (359)
...|+.|||-...||--+|.|- -||++ .++|..-- .+|...| ...+++. ..| .+ +| .|
T Consensus 257 Csam~~~~lg~~~DIh~gG~DL~FPHHe--NEiAQseA-~~~~~~~-------------v~y~~H~--G~L-~i-~G-~K 315 (651)
T PTZ00399 257 CSAMASNILGDPIDIHSGGIDLKFPHHD--NELAQSEA-YFDKHQW-------------VNYFLHS--GHL-HI-KG-LK 315 (651)
T ss_pred HHHHHHHHcCCcceeeccCCCCCCCcch--hHHHHHHH-hhCCCCC-------------CcEEEEE--EEE-Ee-cc-ch
Confidence 4589999999999999999998 46654 34444422 2343211 1122221 222 33 56 69
Q ss_pred CCCCCCCCCCeeecCC-----CHHHHHHHhhhccCCCCCCcccC
Q 018259 284 MSKSAPSDQSRINLLD-----PKDVIANKIKRCKTDSSAGLEFD 322 (359)
Q Consensus 284 MSKS~p~~~s~I~L~D-----~p~~I~kKI~rA~Td~~~~i~~~ 322 (359)
||||. +|.|.+.| +++.++==+... ..+..+.|+
T Consensus 316 MSKSL---GNfItp~dlLekygaDaLR~~lLs~--~~~~dldFS 354 (651)
T PTZ00399 316 MSKSL---KNFITIRQALSKYTARQIRLLFLLH--KWDKPMNYS 354 (651)
T ss_pred hhhcC---CCcccHHHHHHHcChHHHHHHHHhc--CCCCCCccC
Confidence 99997 68888765 566666545432 334445554
No 128
>PRK14536 cysS cysteinyl-tRNA synthetase; Provisional
Probab=59.80 E-value=5.9 Score=41.85 Aligned_cols=68 Identities=25% Similarity=0.130 Sum_probs=39.5
Q ss_pred HHHhhhhhhcccceeecccchH-HHHHHHHHHHHHhhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCcC
Q 018259 206 VLMASDILLYQSDFVPVGEDQK-QHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKM 284 (359)
Q Consensus 206 vLQAADIl~~~adivpvG~DQ~-~hieLaRdia~k~n~~~g~~~~~~~~~~~~~~~~~P~~l~~~~~~~l~sL~dg~~KM 284 (359)
.-|+...|--..||.-+|.|-. ||+|- ++|...-. .|.. .+...++. ..| .. +| +||
T Consensus 223 saMs~~~lg~~~DIH~GG~DliFPHHen--eiAqs~a~-~g~~--------------~~~~w~h~--g~l-~~-~g-~KM 280 (490)
T PRK14536 223 SAMSMKYLGEQCDIHIGGVDHIRVHHTN--EIAQCEAA-TGKP--------------WVRYWLHH--EFL-LM-NK-GKM 280 (490)
T ss_pred HHHHHHHcCCceeEEeccccCCCcchhh--HHHHHHHh-cCCC--------------cceEEEEc--CEE-ee-cC-ccc
Confidence 4455555555679999999965 66654 45554321 2321 13333332 222 23 56 799
Q ss_pred CCCCCCCCCeeecC
Q 018259 285 SKSAPSDQSRINLL 298 (359)
Q Consensus 285 SKS~p~~~s~I~L~ 298 (359)
|||. +|.|.+.
T Consensus 281 SKSl---GN~itl~ 291 (490)
T PRK14536 281 SKSA---GQFLTLS 291 (490)
T ss_pred cccC---CCcccHH
Confidence 9997 6888874
No 129
>PLN02882 aminoacyl-tRNA ligase
Probab=59.56 E-value=8.1 Score=44.95 Aligned_cols=59 Identities=29% Similarity=0.372 Sum_probs=33.9
Q ss_pred cccceeecccchHHHHHHHHHHHHHhhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCcCCCCCCCCCCe
Q 018259 215 YQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSR 294 (359)
Q Consensus 215 ~~adivpvG~DQ~~hieLaRdia~k~n~~~g~~~~~~~~~~~~~~~~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~~s~ 294 (359)
+=+|+..-|.||.... +.+-++-... .+|.. .|..++.. ..+.. .+| +|||||. +|.
T Consensus 566 ~PaD~i~eG~Dq~RgW-f~~ll~~s~~-l~~~~--------------pfk~Vivh--G~vld-e~G-~KMSKSl---GNv 622 (1159)
T PLN02882 566 FPADFVAEGLDQTRGW-FYTLMVLSTA-LFDKP--------------AFKNLICN--GLVLA-EDG-KKMSKSL---KNY 622 (1159)
T ss_pred CCceEEEEecchhhhH-HHHHHHHHHH-hcCCC--------------CcceeEEc--cEEEC-CCC-CCcccCC---CCC
Confidence 4499999999999865 4444444432 12321 23333321 22322 156 7999997 677
Q ss_pred ee
Q 018259 295 IN 296 (359)
Q Consensus 295 I~ 296 (359)
|.
T Consensus 623 Id 624 (1159)
T PLN02882 623 PD 624 (1159)
T ss_pred CC
Confidence 64
No 130
>TIGR00456 argS arginyl-tRNA synthetase. This model recognizes arginyl-tRNA synthetase in every completed genome to date. An interesting feature of the alignment of all arginyl-tRNA synthetases is a fairly deep split between two families. One family includes archaeal, eukaryotic and organellar, spirochete, E. coli, and Synechocystis sp. The second, sharing a deletion of about 25 residues in the central region relative to the first, includes Bacillus subtilis, Aquifex aeolicus, the Mycoplasmas and Mycobacteria, and the Gram-negative bacterium Helicobacter pylori.
Probab=58.80 E-value=9.5 Score=40.74 Aligned_cols=41 Identities=22% Similarity=0.490 Sum_probs=29.9
Q ss_pred ceEEEeeCCCCcchhhhHHHHH--HHHHHHhc--cCcE--EEEEecc
Q 018259 79 KRIVSGVQPTGSIHLGNYLGAI--KNWIALQN--SYET--LFFIVDL 119 (359)
Q Consensus 79 ~~i~sGi~PTG~lHLGnyig~i--~~~~~lQ~--~~~~--~i~IADl 119 (359)
..=|++--|+|.+|+||..+++ .-+.++.+ |++| ...|.||
T Consensus 115 ~ve~~spn~~~~~hiGh~r~~~~gd~l~r~~~~~g~~v~r~~yinD~ 161 (566)
T TIGR00456 115 IIEFSSANPAGPLHIGHLRNAIIGDSLARILEFLGYDVIREYYVNDW 161 (566)
T ss_pred EEEecCCCCCCCCchhhhHHHHHHHHHHHHHHHCCCCeeEEeeecch
Confidence 3457788899999999988766 23555544 6776 4788887
No 131
>PLN02381 valyl-tRNA synthetase
Probab=58.46 E-value=11 Score=43.48 Aligned_cols=45 Identities=31% Similarity=0.377 Sum_probs=30.8
Q ss_pred CceEEEee-CCCCcchhhhHHHHHH--HHHHHhc--cCcEEEE-Eecccee
Q 018259 78 KKRIVSGV-QPTGSIHLGNYLGAIK--NWIALQN--SYETLFF-IVDLHAI 122 (359)
Q Consensus 78 ~~~i~sGi-~PTG~lHLGnyig~i~--~~~~lQ~--~~~~~i~-IADlhA~ 122 (359)
++.|.+|. -+||.+|+||.+.... -+.++++ |+++++. --|-|++
T Consensus 129 ~f~i~~ppPy~nG~lHiGHa~~~ti~Dii~Ry~rm~G~~vl~~~G~D~~Gl 179 (1066)
T PLN02381 129 PFVIVLPPPNVTGALHIGHALTAAIEDTIIRWKRMSGYNALWVPGVDHAGI 179 (1066)
T ss_pred cEEEEeCCCCCCCCccHHHHHHHHHHHHHHHHHHhCCCcccccCCCCCCcC
Confidence 46777776 6889999999886542 2455554 7888654 4455555
No 132
>PLN02946 cysteine-tRNA ligase
Probab=58.25 E-value=3.9 Score=43.87 Aligned_cols=68 Identities=21% Similarity=0.025 Sum_probs=40.8
Q ss_pred hHHHhhhhhhcccceeecccchH-HHHHHHHHHHHHhhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCc
Q 018259 205 PVLMASDILLYQSDFVPVGEDQK-QHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSK 283 (359)
Q Consensus 205 PvLQAADIl~~~adivpvG~DQ~-~hieLaRdia~k~n~~~g~~~~~~~~~~~~~~~~~P~~l~~~~~~~l~sL~dg~~K 283 (359)
..-|+...|-..-||--+|.|-. ||+|--+....-. .|.. +. -.-++. .+|. + +| +|
T Consensus 266 CSaMs~~~lG~~~DIH~GG~DL~FPHHENEiAQsea~---~g~~------------~a-~yW~H~---G~v~-~-~G-~K 323 (557)
T PLN02946 266 CSAMSAAYLGHSFDIHGGGMDLVFPHHENEIAQSCAA---CCDS------------NI-SYWIHN---GFVT-V-DS-EK 323 (557)
T ss_pred HHHHHHHHcCCCeeEeccccccCCCcccchHHHHHHH---hCCC------------CC-ceeeEe---eEEE-e-CC-CC
Confidence 45677888878899999999964 6766543333222 2211 10 011333 4454 4 66 79
Q ss_pred CCCCCCCCCCeeec
Q 018259 284 MSKSAPSDQSRINL 297 (359)
Q Consensus 284 MSKS~p~~~s~I~L 297 (359)
||||. +|.|.+
T Consensus 324 MSKSl---GN~itl 334 (557)
T PLN02946 324 MSKSL---GNFFTI 334 (557)
T ss_pred cCCcC---CCcCCH
Confidence 99997 566665
No 133
>TIGR03447 mycothiol_MshC cysteine--1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase. Members of this protein family are MshC, l-cysteine:1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase, an enzyme that uses ATP to ligate a Cys residue to a mycothiol precursor molecule, in the second to last step in mycothiol biosynthesis. This enzyme shows considerable homology to Cys--tRNA ligases, and many instances are misannotated as such. Mycothiol is found in Mycobacterium tuberculosis, Corynebacterium glutamicum, Streptomyces coelicolor, and various other members of the Actinobacteria. Mycothiol is an analog to glutathione.
Probab=57.88 E-value=62 Score=33.58 Aligned_cols=70 Identities=26% Similarity=0.254 Sum_probs=40.6
Q ss_pred hHHHhhhhhhcccceeecccchH-HHHHHHHHHHHHhhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCc
Q 018259 205 PVLMASDILLYQSDFVPVGEDQK-QHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSK 283 (359)
Q Consensus 205 PvLQAADIl~~~adivpvG~DQ~-~hieLaRdia~k~n~~~g~~~~~~~~~~~~~~~~~P~~l~~~~~~~l~sL~dg~~K 283 (359)
...|+..+|--.-|+.-+|.|-. +|+|- ++|+..- .+|... -+...++. . .... +| +|
T Consensus 230 Csam~~~~lg~~~Dih~GG~DLifpHhen--eiaq~~A-~~g~~~-------------~~~~w~H~--g-~l~~-~G-~K 288 (411)
T TIGR03447 230 CSAIATNRLGAGFDIQGGGSDLIFPHHEF--SAAHAEA-ATGVRR-------------MARHYVHA--G-MIGL-DG-EK 288 (411)
T ss_pred HHHHHHHHcCCceecccCcccccccchHh--HHHHHHH-hcCCCC-------------cceEEEEC--C-EECc-CC-CC
Confidence 34666666767789999999965 56654 3444322 133211 13333432 2 2233 66 79
Q ss_pred CCCCCCCCCCeeecC
Q 018259 284 MSKSAPSDQSRINLL 298 (359)
Q Consensus 284 MSKS~p~~~s~I~L~ 298 (359)
||||. +|.|.+.
T Consensus 289 MSKSl---GN~i~~~ 300 (411)
T TIGR03447 289 MSKSL---GNLVFVS 300 (411)
T ss_pred ccCcC---CCCCCHH
Confidence 99997 6777663
No 134
>PF00750 tRNA-synt_1d: tRNA synthetases class I (R); InterPro: IPR015945 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the core region of arginyl-tRNA synthetase (6.1.1.19 from EC), which has been crystallized and preliminary X-ray crystallographic analysis of yeast arginyl-tRNA synthetase-yeast tRNAArg complexes is available []. ; GO: 0000166 nucleotide binding, 0004814 arginine-tRNA ligase activity, 0005524 ATP binding, 0006420 arginyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 2ZUE_A 2ZUF_A 3FNR_A 1IQ0_A 1F7V_A 1F7U_A 1BS2_A 3GDZ_B.
Probab=57.15 E-value=12 Score=37.44 Aligned_cols=74 Identities=27% Similarity=0.202 Sum_probs=45.4
Q ss_pred ccceeecccchHHHHHHHHHHHHHhhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCcCCCCCCCCCCee
Q 018259 216 QSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRI 295 (359)
Q Consensus 216 ~adivpvG~DQ~~hieLaRdia~k~n~~~g~~~~~~~~~~~~~~~~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~~s~I 295 (359)
+.-|-.+|.||..|+.-...+++.++..-. ... ..+... .++ -+.||..|||+.. ++.|
T Consensus 239 d~~iyV~~~~q~~hf~~l~~~l~~lg~~~~---------------~~~-~~H~~~-g~v-l~~~gk~~mstR~---G~~i 297 (354)
T PF00750_consen 239 DKIIYVVGADQKGHFKQLFAILEALGYDPE---------------AVK-LQHVSF-GVV-LLKDGKVKMSTRK---GNVI 297 (354)
T ss_dssp SEEEEEEEGGGHHHHHHHHHHHHHTT-HHH---------------HCT-EEEEEE--EE-EETTBEESS-TTT---TSST
T ss_pred ccEEEEecCchhhHHHHHHHHHHHhCCCCC---------------CCE-EEEEEE-EEE-EcCCCCccccCCC---CCce
Confidence 455778999999999999999999984200 011 111111 122 2336623899996 7899
Q ss_pred ecCCCHHHHHHHhhh
Q 018259 296 NLLDPKDVIANKIKR 310 (359)
Q Consensus 296 ~L~D~p~~I~kKI~r 310 (359)
.|.|=-++..++.+.
T Consensus 298 ~l~dllde~~~~a~~ 312 (354)
T PF00750_consen 298 TLDDLLDEAVERALE 312 (354)
T ss_dssp BHHHHHHHHHHHHHH
T ss_pred EHHHHHHHHHHHHHH
Confidence 997655555555555
No 135
>COG0495 LeuS Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=57.01 E-value=8.4 Score=43.14 Aligned_cols=87 Identities=21% Similarity=0.121 Sum_probs=45.0
Q ss_pred ccceeecccchHHHHHHHHHHHHHhhhhh--CCccccccCCCCCccccCCc-eecCCCCcccccCCCCCCcCCCCCCCCC
Q 018259 216 QSDFVPVGEDQKQHLELTRELAERVNYLY--GGRKWKKLGGRGGAIFKVPE-PLIPPAGARVMSLTDGLSKMSKSAPSDQ 292 (359)
Q Consensus 216 ~adivpvG~DQ~~hieLaRdia~k~n~~~--g~~~~~~~~~~~~~~~~~P~-~l~~~~~~~l~sL~dg~~KMSKS~p~~~ 292 (359)
=.|+-.+|+|+...+.|= -||+++. ....|+ ...|- -|+.. .+|.+- +| +|||||. +
T Consensus 526 PVD~yigG~ehavlHLly----~rF~Hkal~d~g~~p---------~~epf~~L~~q--GmVl~~-~g-~KMSKSK---g 585 (814)
T COG0495 526 PVDLYIGGIEHAVLHLLY----FRFFHKALFDEGLVP---------KDEPFKKLITQ--GMVLGE-EG-EKMSKSK---G 585 (814)
T ss_pred ChheeecchhHHHHHHHH----HHHHHHHhcccCcCC---------Cccchhhhhcc--ceEEec-CC-Ccccccc---C
Confidence 479999999999866553 2344442 111111 11221 13331 455553 45 6999997 6
Q ss_pred CeeecCC-----CHHHHHHHhhhccCCCCCCcccCC
Q 018259 293 SRINLLD-----PKDVIANKIKRCKTDSSAGLEFDN 323 (359)
Q Consensus 293 s~I~L~D-----~p~~I~kKI~rA~Td~~~~i~~~~ 323 (359)
|.|.+.| -+|.++=-++.+ -+....+.+.+
T Consensus 586 N~v~p~~~i~~yGADt~Rl~~m~~-ap~~~d~~W~e 620 (814)
T COG0495 586 NVVDPEEAVEKYGADTVRLYIMFA-APPEQDLEWSE 620 (814)
T ss_pred CCCCHHHHHHHhCchHHHHHHHhh-CChhhCCCCCh
Confidence 7776654 333344334433 13334455543
No 136
>PF00133 tRNA-synt_1: tRNA synthetases class I (I, L, M and V); InterPro: IPR002300 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. The class Ia aminoacyl-tRNA synthetases consist of the isoleucyl, methionyl, valyl, leucyl, cysteinyl, and arginyl-tRNA synthetases; the class Ib include the glutamyl and glutaminyl-tRNA synthetases, and the class Ic are the tyrosyl and tryptophanyl-tRNA synthetases [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 1OBC_A 2AJH_B 4ARI_A 2AJG_B 4AQ7_D 2AJI_B 4ARC_A 4AS1_A 1QU3_A 1QU2_A ....
Probab=56.13 E-value=13 Score=39.98 Aligned_cols=46 Identities=24% Similarity=0.304 Sum_probs=28.3
Q ss_pred CceEEEee-CCCCcchhhhHHHHHHH--HHHHhc--cCcEEE-EEeccceec
Q 018259 78 KKRIVSGV-QPTGSIHLGNYLGAIKN--WIALQN--SYETLF-FIVDLHAIT 123 (359)
Q Consensus 78 ~~~i~sGi-~PTG~lHLGnyig~i~~--~~~lQ~--~~~~~i-~IADlhA~t 123 (359)
++.+..|. -+||.+|+||.+..+.+ .++++. |+++.+ .--|.|.+-
T Consensus 24 ~f~i~~~PPy~nG~lH~GH~~~~~~~D~i~Ry~rm~G~~v~~~~G~D~~Glp 75 (601)
T PF00133_consen 24 KFFIHDPPPYANGDLHIGHALNKTIKDIIARYKRMQGYNVLFPPGWDCHGLP 75 (601)
T ss_dssp EEEEEE---BTSSS-BHHHHHHHHHHHHHHHHHHCTTSEEEEEEEEB--SHH
T ss_pred cEEEEeCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCcEeCCCCCcCCCCcc
Confidence 46666666 67899999999876532 445554 788754 566777774
No 137
>PRK05729 valS valyl-tRNA synthetase; Reviewed
Probab=56.08 E-value=6.7 Score=44.10 Aligned_cols=45 Identities=31% Similarity=0.342 Sum_probs=29.5
Q ss_pred CceEEEee-CCCCcchhhhHHHHHH--HHHHHhc--cCcEEE-EEecccee
Q 018259 78 KKRIVSGV-QPTGSIHLGNYLGAIK--NWIALQN--SYETLF-FIVDLHAI 122 (359)
Q Consensus 78 ~~~i~sGi-~PTG~lHLGnyig~i~--~~~~lQ~--~~~~~i-~IADlhA~ 122 (359)
++.|.+|. -+||.+|+||.+.... -++++++ |+++.+ .-.|-|++
T Consensus 37 ~f~i~~ppP~~~G~lHiGHa~~~~~~D~~~Ry~rm~G~~vl~~~G~D~~Gi 87 (874)
T PRK05729 37 PFSIVIPPPNVTGSLHMGHALNNTLQDILIRYKRMQGYNTLWLPGTDHAGI 87 (874)
T ss_pred CEEEecCCCCCCCcchHHHHHHHHHHHHHHHHHHhCCCcccCCCCCCccch
Confidence 35555554 5789999999986552 2445554 788754 55566665
No 138
>TIGR00396 leuS_bact leucyl-tRNA synthetase, eubacterial and mitochondrial family. The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both eubacterial and mitochondrial leucyl-tRNA synthetases. It generates higher scores for some valyl-tRNA synthetases than for any archaeal or eukaryotic cytosolic leucyl-tRNA synthetase. Note that the enzyme from Aquifex aeolicus is split into alpha and beta chains; neither chain is long enough to score above the trusted cutoff, but the alpha chain scores well above the noise cutoff. The beta chain must be found by a model and search designed for partial length matches.
Probab=56.00 E-value=8.1 Score=43.39 Aligned_cols=25 Identities=20% Similarity=0.141 Sum_probs=19.6
Q ss_pred cccceeecccch-HHHHHHHHHHHHH
Q 018259 215 YQSDFVPVGEDQ-KQHLELTRELAER 239 (359)
Q Consensus 215 ~~adivpvG~DQ-~~hieLaRdia~k 239 (359)
+-+|+...|.|| .-|+-.+|=+...
T Consensus 519 ~PvD~yi~G~dhailHLlyaRf~~~~ 544 (842)
T TIGR00396 519 LPVDLYIGGAEHAILHLLYARFWHKF 544 (842)
T ss_pred CCCcEeeccHHHHHHHHHHHHHHHHH
Confidence 459999999999 6777777876533
No 139
>PRK14900 valS valyl-tRNA synthetase; Provisional
Probab=55.91 E-value=7 Score=44.96 Aligned_cols=46 Identities=33% Similarity=0.334 Sum_probs=32.0
Q ss_pred CceEEEee-CCCCcchhhhHHHHHH--HHHHHhc--cCcEEE-EEeccceec
Q 018259 78 KKRIVSGV-QPTGSIHLGNYLGAIK--NWIALQN--SYETLF-FIVDLHAIT 123 (359)
Q Consensus 78 ~~~i~sGi-~PTG~lHLGnyig~i~--~~~~lQ~--~~~~~i-~IADlhA~t 123 (359)
++.|+.|. -+||.+|+||.++... -++++++ |+++.+ .-.|-|++-
T Consensus 49 ~f~i~~pPP~~nG~lHiGH~~~~~~~Di~~Ry~rm~G~~vl~~~G~D~~Glp 100 (1052)
T PRK14900 49 PFSIVLPPPNVTGSLHLGHALTATLQDVLIRWKRMSGFNTLWLPGTDHAGIA 100 (1052)
T ss_pred CEEEecCCCCCCCcchHHHHHhhHHHHHHHHHHHhcCCcccCCCCCCccchH
Confidence 47777777 6899999999986552 3556655 788865 455666553
No 140
>KOG0436 consensus Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=54.44 E-value=49 Score=34.77 Aligned_cols=65 Identities=14% Similarity=0.253 Sum_probs=43.7
Q ss_pred CCCCcchhhhHHHHH--HHHHHHhc-cCcEEEE--EeccceecC-------CC-CHHHHHHHHHHHHHHHHHcCcCCC
Q 018259 86 QPTGSIHLGNYLGAI--KNWIALQN-SYETLFF--IVDLHAITL-------PY-DTQQLSKATRETAAIYLACGIDNS 150 (359)
Q Consensus 86 ~PTG~lHLGnyig~i--~~~~~lQ~-~~~~~i~--IADlhA~t~-------~~-~~~~l~~~~~~~~~~~lA~GlDp~ 150 (359)
-+-..+||||....+ ....++|. ..+..|+ -.|-|.+-. .. .++.+......+...|.+.|+.-.
T Consensus 49 YvNAaPHlGhlYS~llaDai~R~q~lkg~~v~fsTGTDEHGlKIqtaaatnG~~P~e~cDr~s~~f~qL~k~~gi~yt 126 (578)
T KOG0436|consen 49 YVNAAPHLGHLYSTLLADAIARFQRLKGKKVIFSTGTDEHGLKIQTAAATNGRNPPELCDRISQSFRQLWKDAGIAYT 126 (578)
T ss_pred ecCCCcchhHHHHHHHHHHHHHHHhhcCCceEeecCCCccchhhhhhHhhcCCChHHHHhhhhHHHHHHHHHhCcchh
Confidence 466779999977666 34667776 3334443 468887742 22 445666777888888999998654
No 141
>KOG2007 consensus Cysteinyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=54.09 E-value=7.2 Score=41.33 Aligned_cols=82 Identities=27% Similarity=0.246 Sum_probs=49.2
Q ss_pred hhHHHhhhhhhcccceeecccchH-HHHHHHHHHHHHhhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCC
Q 018259 204 YPVLMASDILLYQSDFVPVGEDQK-QHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLS 282 (359)
Q Consensus 204 YPvLQAADIl~~~adivpvG~DQ~-~hieLaRdia~k~n~~~g~~~~~~~~~~~~~~~~~P~~l~~~~~~~l~sL~dg~~ 282 (359)
=...||+|||-.+-||--+|.|-+ ||++ .|||+.--+ |...-|-+ -.+++.+ |.- +| .
T Consensus 246 ECSaMas~~lG~~lDIH~GG~DL~FPHHe--NEiAQ~eA~-~~~~~wVn------------YflHtGh---L~i--~g-~ 304 (586)
T KOG2007|consen 246 ECSAMASAILGSQLDIHGGGIDLAFPHHE--NEIAQSEAA-FDDSQWVN------------YFLHTGH---LTI--NG-E 304 (586)
T ss_pred eeHHHHHHhhccccceecCcccccCCCcc--cHHHHHHHH-hcCCccce------------eEEEcCe---eee--cc-c
Confidence 346899999999999999999975 5654 455554322 11111111 1244432 111 45 7
Q ss_pred cCCCCCCCCCCeeecCC-----CHHHHHHHhh
Q 018259 283 KMSKSAPSDQSRINLLD-----PKDVIANKIK 309 (359)
Q Consensus 283 KMSKS~p~~~s~I~L~D-----~p~~I~kKI~ 309 (359)
|||||. +|.|-+.+ +|.+.+--.+
T Consensus 305 KMSKSL---kNFiTIke~Lk~~sp~qLRl~fl 333 (586)
T KOG2007|consen 305 KMSKSL---KNFITIKEALKKYSPRQLRLAFL 333 (586)
T ss_pred hhhhhh---ccceeHHHHHHhcCHHHHHHHHH
Confidence 999997 57887754 5555544433
No 142
>PLN02224 methionine-tRNA ligase
Probab=53.66 E-value=8.8 Score=41.67 Aligned_cols=71 Identities=18% Similarity=0.270 Sum_probs=40.9
Q ss_pred cccceeecccchHHHHHHHHHHHHHhhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCcCCCCCCCCCCe
Q 018259 215 YQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSR 294 (359)
Q Consensus 215 ~~adivpvG~DQ~~hieLaRdia~k~n~~~g~~~~~~~~~~~~~~~~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~~s~ 294 (359)
...|+..+|.|-..++.+.= -|--+.. | ++.|..++.. ..+ .+ +| +|||||. ++.
T Consensus 320 w~~~v~~iGKDii~fH~i~w-pa~l~~~--g--------------~~~P~~i~~~--g~l-~~-eG-~KMSKS~---GN~ 374 (616)
T PLN02224 320 WPASLHLIGKDILRFHAVYW-PAMLMSA--G--------------LELPKMVFGH--GFL-TK-DG-MKMGKSL---GNT 374 (616)
T ss_pred CCcceEEEeecccccHHHHH-HHHHHHC--C--------------CCCCcEEEec--ccE-ec-CC-ccccccC---Ccc
Confidence 35688999999988644332 1111111 1 3457665542 233 33 67 7999997 688
Q ss_pred eecCC-----CHHHHHHHhhh
Q 018259 295 INLLD-----PKDVIANKIKR 310 (359)
Q Consensus 295 I~L~D-----~p~~I~kKI~r 310 (359)
|.+.| ++|.++--+.+
T Consensus 375 i~p~e~l~~ygaD~~R~yLl~ 395 (616)
T PLN02224 375 LEPFELVQKFGPDAVRYFFLR 395 (616)
T ss_pred CCHHHHHHHcCcHHHHHHHHh
Confidence 86654 44555444444
No 143
>PF00750 tRNA-synt_1d: tRNA synthetases class I (R); InterPro: IPR015945 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the core region of arginyl-tRNA synthetase (6.1.1.19 from EC), which has been crystallized and preliminary X-ray crystallographic analysis of yeast arginyl-tRNA synthetase-yeast tRNAArg complexes is available []. ; GO: 0000166 nucleotide binding, 0004814 arginine-tRNA ligase activity, 0005524 ATP binding, 0006420 arginyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 2ZUE_A 2ZUF_A 3FNR_A 1IQ0_A 1F7V_A 1F7U_A 1BS2_A 3GDZ_B.
Probab=53.17 E-value=5.3 Score=40.09 Aligned_cols=41 Identities=22% Similarity=0.366 Sum_probs=26.1
Q ss_pred EEEeeCCCCcchhhhHHHHH--HHHHHHhc--cCcE--EEEEeccce
Q 018259 81 IVSGVQPTGSIHLGNYLGAI--KNWIALQN--SYET--LFFIVDLHA 121 (359)
Q Consensus 81 i~sGi~PTG~lHLGnyig~i--~~~~~lQ~--~~~~--~i~IADlhA 121 (359)
=|+.--|||++|+||.-.++ .-+.++-+ |++| ...|.||=.
T Consensus 25 E~sSpNp~kplHvGHlR~~iiGd~laril~~~G~~V~r~nyigD~G~ 71 (354)
T PF00750_consen 25 EFSSPNPTKPLHVGHLRNTIIGDSLARILEAAGYDVTRENYIGDWGT 71 (354)
T ss_dssp EE---BTTSS-BHHHHHHHHHHHHHHHHHHHTTEEEEEEEEEBTTSH
T ss_pred EecCCCCCCCCcCCcchhhhhhHHHHHHHHHcCCeeeeEEEECCCCH
Confidence 36777899999999988665 23444544 7776 478999844
No 144
>PRK14535 cysS cysteinyl-tRNA synthetase; Provisional
Probab=52.88 E-value=79 Score=35.01 Aligned_cols=75 Identities=13% Similarity=0.085 Sum_probs=44.0
Q ss_pred CCCceEEE-eeCCCCcchhhhHHHHHH--HHHHHhc--cCcEEEE--Eeccceec-C-----CCCHHH-HHHHHHHHHHH
Q 018259 76 SVKKRIVS-GVQPTGSIHLGNYLGAIK--NWIALQN--SYETLFF--IVDLHAIT-L-----PYDTQQ-LSKATRETAAI 141 (359)
Q Consensus 76 ~~~~~i~s-Gi~PTG~lHLGnyig~i~--~~~~lQ~--~~~~~i~--IADlhA~t-~-----~~~~~~-l~~~~~~~~~~ 141 (359)
+.+.++|+ |.-+=+.+||||....+. -+.++++ |++|.++ +.|.---+ . ..++.+ .++++..+..+
T Consensus 246 ~~~V~mYvCGPTVYd~~HIGHaRt~V~~DVL~R~Lr~~Gy~V~fV~NiTD~DDKII~~A~e~G~sp~ela~~y~~~F~~d 325 (699)
T PRK14535 246 PENVRMYVCGMTVYDYCHLGHARVMVVFDMIARWLRECGYPLTYVRNITDIDDKIIARAAENGETIGELTARFIQAMHED 325 (699)
T ss_pred CCceEEEecCCcCCCCCcccchhHHHHHHHHHHHHHHcCCceEEEeCCcccchHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 33455553 555557899999887552 3444443 7887654 33332111 1 124444 34566788888
Q ss_pred HHHcCcCCC
Q 018259 142 YLACGIDNS 150 (359)
Q Consensus 142 ~lA~GlDp~ 150 (359)
+.++|+.+.
T Consensus 326 ~~~LnI~~p 334 (699)
T PRK14535 326 ADALGVLRP 334 (699)
T ss_pred HHHcCCCCC
Confidence 999998764
No 145
>TIGR00392 ileS isoleucyl-tRNA synthetase. The isoleucyl tRNA synthetase (IleS) is a class I amino acyl-tRNA ligase and is particularly closely related to the valyl tRNA synthetase. This model may recognize IleS from every species, including eukaryotic cytosolic and mitochondrial forms.
Probab=52.80 E-value=12 Score=41.85 Aligned_cols=46 Identities=24% Similarity=0.279 Sum_probs=31.8
Q ss_pred CCceEEEee-CCCCcchhhhHHHHHHH--HHHHhc--cCcEEE-EEecccee
Q 018259 77 VKKRIVSGV-QPTGSIHLGNYLGAIKN--WIALQN--SYETLF-FIVDLHAI 122 (359)
Q Consensus 77 ~~~~i~sGi-~PTG~lHLGnyig~i~~--~~~lQ~--~~~~~i-~IADlhA~ 122 (359)
.++.++.|. -|||.+|+||.+..+.+ +.+++. |+++++ .--|-|.+
T Consensus 36 ~~f~i~~~pPy~nG~lH~GH~~~~~~~D~~~Ry~rm~G~~v~~~~G~D~~Gl 87 (861)
T TIGR00392 36 PEFIFHDGPPYANGSIHLGHALNKILKDIILRYKTMQGFNVTRKPGWDTHGL 87 (861)
T ss_pred CCeEEecCCCCCCCCccHHHHHHHHHHHHHHHHHHcCCCccCCCCCcCCCcc
Confidence 357888888 56799999998865532 556655 788755 44466655
No 146
>cd02166 NMNAT_Archaea Nicotinamide/nicotinate mononucleotide adenylyltransferase, archaeal. This family of archaeal proteins exhibits nicotinamide-nucleotide adenylyltransferase (NMNAT) activity utilizing the salvage pathway to synthesize NAD. In some cases, the enzyme was tested and found also to have the activity of nicotinate-nucleotide adenylyltransferase an enzyme of NAD de novo biosynthesis, although with a higher Km. In some archaeal species, a number of proteins which are uncharacterized with respect to activity, are also present.
Probab=51.12 E-value=76 Score=28.24 Aligned_cols=66 Identities=23% Similarity=0.233 Sum_probs=32.6
Q ss_pred eCCCCcchhhhHHHHHHHHHHHhccCc-EEEEEe-ccceec--CCCCHHHHHHHHHHHHHHHHHcCcCCCccEEEEccCc
Q 018259 85 VQPTGSIHLGNYLGAIKNWIALQNSYE-TLFFIV-DLHAIT--LPYDTQQLSKATRETAAIYLACGIDNSKASVFVQSHV 160 (359)
Q Consensus 85 i~PTG~lHLGnyig~i~~~~~lQ~~~~-~~i~IA-DlhA~t--~~~~~~~l~~~~~~~~~~~lA~GlDp~kt~i~~qS~~ 160 (359)
|+| +|+||.-. ++...+. ++ ++++|. +..... ++.+.++-.+.++. .+...|+|-+++.++-..|.
T Consensus 8 FdP---~H~GHl~~-i~~a~~~---~d~l~v~v~s~~~~~~~~~~~~~~~R~~mi~~---~~~~~~~~~~~v~v~~~~d~ 77 (163)
T cd02166 8 FQP---FHLGHLKV-IKWILEE---VDELIIGIGSAQESHTLENPFTAGERVLMIRR---ALEEEGIDLSRYYIIPVPDI 77 (163)
T ss_pred cCC---CCHHHHHH-HHHHHHH---CCEEEEEecCCCCCCCCCCCCCHHHHHHHHHH---HHHhcCCCcCeEEEEecCCC
Confidence 566 99999644 3444222 44 455453 333332 23343332222222 22333677777777666554
No 147
>PRK00390 leuS leucyl-tRNA synthetase; Validated
Probab=50.95 E-value=11 Score=42.21 Aligned_cols=24 Identities=21% Similarity=0.152 Sum_probs=19.2
Q ss_pred cccceeecccch-HHHHHHHHHHHH
Q 018259 215 YQSDFVPVGEDQ-KQHLELTRELAE 238 (359)
Q Consensus 215 ~~adivpvG~DQ-~~hieLaRdia~ 238 (359)
|-+|+...|.|| .-|+-.+|=...
T Consensus 522 ~P~Dly~~G~D~~i~hL~y~Rf~~~ 546 (805)
T PRK00390 522 LPVDQYIGGIEHAVLHLLYARFFTK 546 (805)
T ss_pred CCCcEEeccHHHHHHHHHHHHHHHH
Confidence 459999999999 678888885553
No 148
>PRK12451 arginyl-tRNA synthetase; Reviewed
Probab=49.58 E-value=15 Score=39.27 Aligned_cols=39 Identities=15% Similarity=0.244 Sum_probs=28.7
Q ss_pred EEEeeCCCCcchhhhHHHHH--HHHHHHhc--cCcE--EEEEecc
Q 018259 81 IVSGVQPTGSIHLGNYLGAI--KNWIALQN--SYET--LFFIVDL 119 (359)
Q Consensus 81 i~sGi~PTG~lHLGnyig~i--~~~~~lQ~--~~~~--~i~IADl 119 (359)
=|+.--|||++|+||.-+++ .-+.++-+ |++| ...|.||
T Consensus 118 E~sSpNp~kplHvGH~R~aiiGd~l~ril~~~G~~V~r~nyinD~ 162 (562)
T PRK12451 118 DYSSPNIAKPFSMGHLRSTMIGNALKHIAEKCGYEVVGINYIGDW 162 (562)
T ss_pred EecCCCCCCCcccchhhhHHHHHHHHHHHHHCCCCeEEEeeecCc
Confidence 36777899999999988766 23445544 7877 4678888
No 149
>PRK13804 ileS isoleucyl-tRNA synthetase; Provisional
Probab=49.50 E-value=11 Score=43.07 Aligned_cols=46 Identities=22% Similarity=0.357 Sum_probs=31.4
Q ss_pred CceEEEee-CCCCcchhhhHHHHHHH--HHHHhc--cCcEEE-EEeccceec
Q 018259 78 KKRIVSGV-QPTGSIHLGNYLGAIKN--WIALQN--SYETLF-FIVDLHAIT 123 (359)
Q Consensus 78 ~~~i~sGi-~PTG~lHLGnyig~i~~--~~~lQ~--~~~~~i-~IADlhA~t 123 (359)
++.+..|. -++|.+|+||.+..+.+ .++++. |+++.+ .-=|-|.+-
T Consensus 55 ~f~l~dgPPyanG~lHiGHaln~~lkDii~Ry~rm~G~~v~~~pGwD~hGlP 106 (961)
T PRK13804 55 KFVLHDGPPYANGNIHIGHALNKILKDVIVRSKQMLGFDANYVPGWDCHGLP 106 (961)
T ss_pred cEEEeCCCCCCCCCccHHHHHHHHHHHHHHHHHHhcCCcccCCCCcCCCCcH
Confidence 46777776 67899999998876532 555654 788754 444666663
No 150
>PRK05743 ileS isoleucyl-tRNA synthetase; Reviewed
Probab=49.34 E-value=10 Score=42.92 Aligned_cols=74 Identities=18% Similarity=0.288 Sum_probs=46.0
Q ss_pred CceEEEee-CCCCcchhhhHHHHHHH--HHHHhc--cCcEEE-EEeccceecC-------------CCCHHHHHHHH---
Q 018259 78 KKRIVSGV-QPTGSIHLGNYLGAIKN--WIALQN--SYETLF-FIVDLHAITL-------------PYDTQQLSKAT--- 135 (359)
Q Consensus 78 ~~~i~sGi-~PTG~lHLGnyig~i~~--~~~lQ~--~~~~~i-~IADlhA~t~-------------~~~~~~l~~~~--- 135 (359)
++.+..|. -++|.+|+||.+..+.+ +++++. |+++.+ .--|-|.+-. ..+++++++.+
T Consensus 50 ~f~i~~~pPyanG~lHiGHa~~~~~~Dii~Ry~rm~G~~v~~~~G~D~~Glpie~~~ek~l~~~~~~~~~~~f~~~c~~~ 129 (912)
T PRK05743 50 KFILHDGPPYANGDIHIGHALNKILKDIIVKSKTMSGFDAPYVPGWDCHGLPIELKVEKKLGKKGKKLSAAEFRKKCREY 129 (912)
T ss_pred cEEEeCCCCCCCCCccHHHHHHHHHHHHHHHHHHccCCcccCCCCcCCCccHhHHHHHHHcCCccccCCHHHHHHHHHHH
Confidence 45666666 57899999999875532 556665 788754 5556666532 01344433333
Q ss_pred -----HHHHHHHHHcCc--CCCc
Q 018259 136 -----RETAAIYLACGI--DNSK 151 (359)
Q Consensus 136 -----~~~~~~~lA~Gl--Dp~k 151 (359)
..+..++..+|+ |.++
T Consensus 130 ~~~~~~~~~~~~~~lG~~~dw~~ 152 (912)
T PRK05743 130 ALEQVDIQREDFKRLGVLGDWDN 152 (912)
T ss_pred HHHHHHHHHHHHHHhCCcccCCC
Confidence 344557778898 7775
No 151
>PRK00133 metG methionyl-tRNA synthetase; Reviewed
Probab=49.01 E-value=11 Score=41.03 Aligned_cols=32 Identities=25% Similarity=0.394 Sum_probs=20.0
Q ss_pred ccCCceecCCCCcccccCCCCCCcCCCCCCCCCCeeecCC
Q 018259 260 FKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLD 299 (359)
Q Consensus 260 ~~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~~s~I~L~D 299 (359)
++.|..++.. ..+. + +| +|||||. +|.|...|
T Consensus 311 ~~lP~~v~~h--g~v~-~-~G-~KMSKS~---GNvV~p~d 342 (673)
T PRK00133 311 YRLPTNVFAH--GFLT-V-EG-AKMSKSR---GTFIWART 342 (673)
T ss_pred CCCCCEEeee--ccEE-e-cC-CcccccC---CcccCHHH
Confidence 4457655542 3343 2 66 7999997 67877654
No 152
>PF02662 FlpD: Methyl-viologen-reducing hydrogenase, delta subunit; InterPro: IPR003813 Methyl-viologen-reducing hydrogenase (MVH) is one of the enzymes involved in methanogenesis and coded in the mth-flp-mvh-mrt cluster of methane genes in Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) []. No specific functions have been assigned to the delta subunit.; GO: 0015948 methanogenesis, 0055114 oxidation-reduction process
Probab=48.97 E-value=77 Score=27.14 Aligned_cols=72 Identities=11% Similarity=0.081 Sum_probs=47.0
Q ss_pred EEeeCCCCcchhhhHHHHHHHHHHHhccCcEEEEEeccceecC-CCCHHHHHHHHHHHHHHHHHcCcCCCccEEEEccC
Q 018259 82 VSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITL-PYDTQQLSKATRETAAIYLACGIDNSKASVFVQSH 159 (359)
Q Consensus 82 ~sGi~PTG~lHLGnyig~i~~~~~lQ~~~~~~i~IADlhA~t~-~~~~~~l~~~~~~~~~~~lA~GlDp~kt~i~~qS~ 159 (359)
.+-+.=||++..-+.+-+ |.+|.+=++++++-..==. ..-....+++.....+.+...|++|+++.+++=|-
T Consensus 31 iIrvpC~Grv~~~~il~A------f~~GADGV~V~gC~~g~Ch~~~Gn~~a~~Rv~~~k~~L~~~Gi~~eRv~~~~~~~ 103 (124)
T PF02662_consen 31 IIRVPCSGRVDPEFILRA------FEKGADGVLVAGCHPGDCHYREGNYRAEKRVERLKKLLEELGIEPERVRLYWISA 103 (124)
T ss_pred EEEccCCCccCHHHHHHH------HHcCCCEEEEeCCCCCCCCcchhhHHHHHHHHHHHHHHHHcCCChhHeEEEEeCc
Confidence 345566788876664333 5667887777665522111 11235677777778888888999999998877554
No 153
>PLN02286 arginine-tRNA ligase
Probab=47.13 E-value=14 Score=39.62 Aligned_cols=39 Identities=15% Similarity=0.157 Sum_probs=28.4
Q ss_pred EEEeeCCCCcchhhhHHHHH--HHHHHHhc--cCcE--EEEEecc
Q 018259 81 IVSGVQPTGSIHLGNYLGAI--KNWIALQN--SYET--LFFIVDL 119 (359)
Q Consensus 81 i~sGi~PTG~lHLGnyig~i--~~~~~lQ~--~~~~--~i~IADl 119 (359)
=|+.--|||++|+||.-+++ .-+.++-+ |++| ...|.||
T Consensus 122 EfsSpNp~kplHvGHlRsaiiGdsLaril~~~G~~V~r~nyinD~ 166 (576)
T PLN02286 122 DFSSPNIAKEMHVGHLRSTIIGDTLARMLEFSGVEVLRRNHVGDW 166 (576)
T ss_pred EecCCCCCCCCccccccchhhHHHHHHHHHHcCCceEEEEeecch
Confidence 36777999999999987665 23444443 7876 4678888
No 154
>TIGR00395 leuS_arch leucyl-tRNA synthetase, archaeal and cytosolic family. The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both archaeal and cytosolic eukaryotic leucyl-tRNA synthetases; the eubacterial and mitochondrial forms differ so substantially that some other tRNA ligases score higher by this model than does any eubacterial LeuS.
Probab=46.98 E-value=9.4 Score=43.37 Aligned_cols=45 Identities=13% Similarity=0.106 Sum_probs=29.3
Q ss_pred CceEEEee-CCCCcchhhhHHHHHH--HHHHHhc--cCcEEEEE-ecccee
Q 018259 78 KKRIVSGV-QPTGSIHLGNYLGAIK--NWIALQN--SYETLFFI-VDLHAI 122 (359)
Q Consensus 78 ~~~i~sGi-~PTG~lHLGnyig~i~--~~~~lQ~--~~~~~i~I-ADlhA~ 122 (359)
++.|..|. -+||.+|+||.++... -+.++|+ |+++.+.. -|.|.+
T Consensus 26 kf~i~~ppPy~nG~lH~GH~~~~~~~D~~aRy~Rm~G~~vl~p~G~d~~G~ 76 (938)
T TIGR00395 26 KFFLTMAYPYLNGVMHAGHCRTFTIPEVSARFERMKGKNVLFPLGFHVTGT 76 (938)
T ss_pred ceEEecCCCCCCCCcccchhhhhhHHHHHHHHHHhcCCccCCCCccCCCCC
Confidence 45666665 6789999999886553 2556665 78876543 344444
No 155
>TIGR00018 panC pantoate--beta-alanine ligase. This family is pantoate--beta-alanine ligase, the last enzyme of pantothenate biosynthesis.
Probab=46.58 E-value=80 Score=31.11 Aligned_cols=72 Identities=25% Similarity=0.328 Sum_probs=51.6
Q ss_pred cccceeecccchHHHHHHHHHHHHHhhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCcCCCCCCCCCCe
Q 018259 215 YQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSR 294 (359)
Q Consensus 215 ~~adivpvG~DQ~~hieLaRdia~k~n~~~g~~~~~~~~~~~~~~~~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~~s~ 294 (359)
.++|....|+--.|-+.+.|.+.+.+|. |.-++.- +.+-. .||. =||+- .
T Consensus 142 v~P~~a~FGeKD~QQl~vIrrmv~dL~~--------------------~v~I~~~--ptvRe-~dGL-A~SSR------N 191 (282)
T TIGR00018 142 VQPDVAYFGEKDAQQLAVIRKLVADLFL--------------------DIEIVPV--PIVRE-EDGL-ALSSR------N 191 (282)
T ss_pred cCCCeeEecccHHHHHHHHHHHHHHcCC--------------------CceEEEe--CceEC-CCCC-chhhc------c
Confidence 3899999999999999999999999882 4334331 22222 3663 77755 3
Q ss_pred eecCCCHHHHHHHhhhccCCCC
Q 018259 295 INLLDPKDVIANKIKRCKTDSS 316 (359)
Q Consensus 295 I~L~D~p~~I~kKI~rA~Td~~ 316 (359)
.||+....+....|-++.+...
T Consensus 192 ~~Ls~~eR~~A~~l~~~L~~a~ 213 (282)
T TIGR00018 192 VYLTAEQRKIAPGLYRALQAIA 213 (282)
T ss_pred ccCCHHHHHHHHHHHHHHHHHH
Confidence 6888888888888877666543
No 156
>PLN02959 aminoacyl-tRNA ligase
Probab=46.51 E-value=25 Score=40.71 Aligned_cols=37 Identities=19% Similarity=0.187 Sum_probs=24.1
Q ss_pred CCCCcchhhhHHHHHHH--HHHHhc--cCcEEEE-Eecccee
Q 018259 86 QPTGSIHLGNYLGAIKN--WIALQN--SYETLFF-IVDLHAI 122 (359)
Q Consensus 86 ~PTG~lHLGnyig~i~~--~~~lQ~--~~~~~i~-IADlhA~ 122 (359)
-++|.+||||.+....+ .+++|+ |+++.+. -=|-|.+
T Consensus 55 Y~NG~lHiGHa~t~t~~D~i~Rykrm~G~~vlfp~G~d~tGl 96 (1084)
T PLN02959 55 YMNGLLHLGHAFSLSKLEFAAAYHRLRGANVLLPFAFHCTGM 96 (1084)
T ss_pred CCCCCcchhhHHHHHHHHHHHHHHHcCCCccCCCCCcCCCCc
Confidence 35799999999876543 556665 7777553 3344444
No 157
>PRK14534 cysS cysteinyl-tRNA synthetase; Provisional
Probab=46.34 E-value=56 Score=34.59 Aligned_cols=73 Identities=15% Similarity=0.099 Sum_probs=43.4
Q ss_pred CceEEE-eeCCCCcchhhhHHHHHH--HHHHHhc--cCcEEEE--Eecc-----------ceecC-----CCCH-HHHHH
Q 018259 78 KKRIVS-GVQPTGSIHLGNYLGAIK--NWIALQN--SYETLFF--IVDL-----------HAITL-----PYDT-QQLSK 133 (359)
Q Consensus 78 ~~~i~s-Gi~PTG~lHLGnyig~i~--~~~~lQ~--~~~~~i~--IADl-----------hA~t~-----~~~~-~~l~~ 133 (359)
++++|+ |.-+=..+||||....+. -+.++++ |++|.+. |.|+ -.++. ..++ +-.++
T Consensus 21 ~v~mY~CGpTVYd~~HiGh~r~~v~~Dvl~R~l~~~G~~V~~v~NiTDIghltg~~D~gddKIi~~A~~~g~~~~e~a~~ 100 (481)
T PRK14534 21 DVKVYACGPTVYNYAHIGNFRTYIFEDLLIKSLRLLKYNVNYAMNITDIGHLTGDFDDGEDKVVKAARERGLTVYEISRF 100 (481)
T ss_pred ceEEEeCCCCCCCCCCccchhHHHHHHHHHHHHHHcCCceEEEEeccccccccCCccCCCcHHHHHHHHcCCCHHHHHHH
Confidence 445553 433446799999887552 2444433 7888663 6666 22221 1244 33445
Q ss_pred HHHHHHHHHHHcCcCCC
Q 018259 134 ATRETAAIYLACGIDNS 150 (359)
Q Consensus 134 ~~~~~~~~~lA~GlDp~ 150 (359)
++..+.+++.++|+.+.
T Consensus 101 ~~~~f~~d~~~Lni~~~ 117 (481)
T PRK14534 101 FTEAFFDDCKKLNIVYP 117 (481)
T ss_pred HHHHHHHHHHHcCCCCC
Confidence 66778888999998765
No 158
>PF01406 tRNA-synt_1e: tRNA synthetases class I (C) catalytic domain; InterPro: IPR015803 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Cysteinyl-tRNA synthetase (6.1.1.16 from EC) is an alpha monomer and belongs to class Ia.; GO: 0000166 nucleotide binding, 0004817 cysteine-tRNA ligase activity, 0005524 ATP binding, 0006423 cysteinyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3SP1_B 3TQO_A 3C8Z_B 1LI5_B 1LI7_B 1U0B_B.
Probab=45.10 E-value=1.1e+02 Score=30.39 Aligned_cols=69 Identities=26% Similarity=0.137 Sum_probs=38.9
Q ss_pred HHHhhhhhhcccceeecccchH-HHHHHHHHHHHHhhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCcC
Q 018259 206 VLMASDILLYQSDFVPVGEDQK-QHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKM 284 (359)
Q Consensus 206 vLQAADIl~~~adivpvG~DQ~-~hieLaRdia~k~n~~~g~~~~~~~~~~~~~~~~~P~~l~~~~~~~l~sL~dg~~KM 284 (359)
..|+...|-..-||--+|.|-. ||+|=-+-.++-.. |+.. . -.-++. .+|.- +| +||
T Consensus 196 sam~~~~lG~~~DIH~GG~DL~FPHHENEiAqs~a~~---g~~~-a------------~~W~H~---g~l~~--~g-~KM 253 (300)
T PF01406_consen 196 SAMSMKYLGDTFDIHGGGIDLIFPHHENEIAQSEAAT---GKPF-A------------NYWMHN---GHLNV--DG-EKM 253 (300)
T ss_dssp HHHHHHHHTTSEEEEEEEGGGTTTHHHHHHHHHHHHH---SS-S-E------------EEEEEE-----EEE--TT-CE-
T ss_pred HHHHHHHcCCCceEEccccccCCCCccchHHHHHHhh---CchH-H------------HHHHHH---HHHhh--cC-ccc
Confidence 5677777778899999999975 78886655555443 3211 0 011332 22322 56 799
Q ss_pred CCCCCCCCCeeecCC
Q 018259 285 SKSAPSDQSRINLLD 299 (359)
Q Consensus 285 SKS~p~~~s~I~L~D 299 (359)
|||. +|.|.+.|
T Consensus 254 SKSl---gN~~~i~d 265 (300)
T PF01406_consen 254 SKSL---GNFITIRD 265 (300)
T ss_dssp -TTT---T---BHHH
T ss_pred cccC---CCEEEHHH
Confidence 9997 67887644
No 159
>KOG1148 consensus Glutaminyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=43.84 E-value=28 Score=37.87 Aligned_cols=101 Identities=18% Similarity=0.165 Sum_probs=53.3
Q ss_pred ceEEEee--CCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEeccceecCCC-CHHHHHHHHHHHHHHHHHcCcCCCccEE
Q 018259 79 KRIVSGV--QPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPY-DTQQLSKATRETAAIYLACGIDNSKASV 154 (359)
Q Consensus 79 ~~i~sGi--~PTG~lHLGnyig~i~~~~~lQ~-~~~~~i~IADlhA~t~~~-~~~~l~~~~~~~~~~~lA~GlDp~kt~i 154 (359)
-.|+|-| +|-|.+||||.-.+..++=-... +.-|++- =|. |+|. +-++--+.+.++ ...+|++|=| |
T Consensus 247 GkV~TRFPPEPNG~LHIGHaKAInvNFgyAk~~~G~cyLR-fDD---TNPEkEee~yf~sI~e~---V~WLG~~P~k--v 317 (764)
T KOG1148|consen 247 GKVVTRFPPEPNGILHIGHAKAINVNFGYAKAHGGVCYLR-FDD---TNPEKEEEEYFESIKEM---VAWLGFEPYK--V 317 (764)
T ss_pred CeeEEeCCCCCCceeeecchhheeechhhhhhhCCeEEEe-cCC---CCcchhhHHHHHHHHHH---HHHhCCCcee--e
Confidence 3788888 77799999996432223211111 2223433 333 2222 222222333333 3346999976 5
Q ss_pred EEccCcch-hhHHHHH-------HhccCCHHHHhchhhHHHH
Q 018259 155 FVQSHVRA-HVELMWL-------LSSATPIGWLNKMIQFKEK 188 (359)
Q Consensus 155 ~~qS~~~~-~~eL~w~-------L~~~~~i~~L~r~~~~k~~ 188 (359)
=..||+.. ..+++.. +.|+.+..++++...+++.
T Consensus 318 TysSDyFdqLy~~av~LIrkG~AYVcHqt~eEik~~rg~~~~ 359 (764)
T KOG1148|consen 318 TYSSDYFDQLYELAVELIRKGKAYVCHQTAEEIKERRGFNER 359 (764)
T ss_pred ecchhHHHHHHHHHHHHHhcCceeEEeccHHHHHhhcCCCCC
Confidence 56777642 3343333 3478888888855555443
No 160
>PLN02943 aminoacyl-tRNA ligase
Probab=43.60 E-value=27 Score=39.94 Aligned_cols=45 Identities=22% Similarity=0.150 Sum_probs=29.6
Q ss_pred CceEEEe-eCCCCcchhhhHHHHHH--HHHHHhc--cCcEEE-EEecccee
Q 018259 78 KKRIVSG-VQPTGSIHLGNYLGAIK--NWIALQN--SYETLF-FIVDLHAI 122 (359)
Q Consensus 78 ~~~i~sG-i~PTG~lHLGnyig~i~--~~~~lQ~--~~~~~i-~IADlhA~ 122 (359)
++.|..| =-+||.+|+||.+.... -++++++ |+++.+ .-.|-|++
T Consensus 89 ~f~i~~pPP~~tG~lHiGHa~~~~~~D~~~Ry~rm~G~~vl~~~G~D~~Gl 139 (958)
T PLN02943 89 PFVIPMPPPNVTGSLHMGHAMFVTLEDIMVRYNRMKGRPTLWIPGTDHAGI 139 (958)
T ss_pred CEEEecCCCCCCCchhHHHHHHHHHHHHHHHHHHhcCCeeecCCCCCcccc
Confidence 3566665 46799999999886442 2445543 788865 45566665
No 161
>COG0060 IleS Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=42.84 E-value=34 Score=39.08 Aligned_cols=14 Identities=36% Similarity=0.506 Sum_probs=11.3
Q ss_pred cceeecccchHHHH
Q 018259 217 SDFVPVGEDQKQHL 230 (359)
Q Consensus 217 adivpvG~DQ~~hi 230 (359)
+|+..=|.||..=-
T Consensus 556 aD~~lEGsDQ~RGW 569 (933)
T COG0060 556 ADFYLEGSDQTRGW 569 (933)
T ss_pred CcEEEEeccccchh
Confidence 59999999996533
No 162
>PRK12418 cysteinyl-tRNA synthetase; Provisional
Probab=42.58 E-value=88 Score=32.12 Aligned_cols=70 Identities=26% Similarity=0.233 Sum_probs=42.5
Q ss_pred hHHHhhhhhhcccceeecccchH-HHHHHHHHHHHHhhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCc
Q 018259 205 PVLMASDILLYQSDFVPVGEDQK-QHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSK 283 (359)
Q Consensus 205 PvLQAADIl~~~adivpvG~DQ~-~hieLaRdia~k~n~~~g~~~~~~~~~~~~~~~~~P~~l~~~~~~~l~sL~dg~~K 283 (359)
..-|+..+|--.-|+--+|.|-. +|+|- ++|+..- .+|... -+..+++. ..| .. +| +|
T Consensus 203 Csam~~~~lg~~~DIH~GG~DL~FPHHen--eiaq~~a-~~g~~~-------------~~~~w~H~--g~l-~~-~G-~K 261 (384)
T PRK12418 203 CSAIALNRLGSGFDIQGGGSDLIFPHHEF--SAAHAEA-ATGERR-------------FARHYVHA--GMI-GL-DG-EK 261 (384)
T ss_pred HHHHHHHHcCCCcccccCccccccchhHh--HHHHHHH-hcCCCC-------------cceEEEEC--CEE-CC-CC-Cc
Confidence 45677777777899999999965 56654 4444321 233211 13344442 222 33 66 79
Q ss_pred CCCCCCCCCCeeecC
Q 018259 284 MSKSAPSDQSRINLL 298 (359)
Q Consensus 284 MSKS~p~~~s~I~L~ 298 (359)
||||. +|.|.+.
T Consensus 262 MSKSl---GN~i~~~ 273 (384)
T PRK12418 262 MSKSR---GNLVFVS 273 (384)
T ss_pred ccCcC---CCcCCHH
Confidence 99997 6777664
No 163
>PTZ00427 isoleucine-tRNA ligase, putative; Provisional
Probab=42.10 E-value=21 Score=41.87 Aligned_cols=34 Identities=24% Similarity=0.410 Sum_probs=20.5
Q ss_pred ccccchhhHHHhhhhh--hcccceeecccchHHHHH
Q 018259 198 GVALLTYPVLMASDIL--LYQSDFVPVGEDQKQHLE 231 (359)
Q Consensus 198 ~~g~l~YPvLQAADIl--~~~adivpvG~DQ~~hie 231 (359)
+.+.+-||--...+-+ .|=+|+.+=|.||....-
T Consensus 653 p~a~~~~P~~~~~~~f~~~fPaD~i~eG~Dq~rgWf 688 (1205)
T PTZ00427 653 PYAKVHYPFSTEKEDFHKIFPADFIAEGLDQTRGWF 688 (1205)
T ss_pred hHHHhCCCcccchhhHhccCCceEEEEecchhccHH
Confidence 3445556632112322 356999999999987543
No 164
>PF09334 tRNA-synt_1g: tRNA synthetases class I (M); InterPro: IPR015413 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain is found in methionyl and leucyl tRNA synthetases. ; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2D5B_A 1A8H_A 1WOY_A 2D54_A 4DLP_A 2CT8_B 2CSX_A 1MED_A 1PFU_A 1PFW_A ....
Probab=41.56 E-value=8.2 Score=39.37 Aligned_cols=32 Identities=34% Similarity=0.402 Sum_probs=17.9
Q ss_pred ccCCceecCCCCcccccCCCCCCcCCCCCCCCCCeeecCC
Q 018259 260 FKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLD 299 (359)
Q Consensus 260 ~~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~~s~I~L~D 299 (359)
++.|..++.. ..+. + +| +|||||. ++.|...|
T Consensus 309 ~~lP~~i~~~--~~~~-~-~g-~K~SkS~---gn~i~~~~ 340 (391)
T PF09334_consen 309 LPLPRRIVVH--GFLT-L-DG-EKMSKSR---GNVIWPDD 340 (391)
T ss_dssp B---SEEEEE----EE-E-TT-CCEETTT---TESSBHHH
T ss_pred CCCCCEEEee--eeEE-E-CC-eeccccC---CcccCHHH
Confidence 4567766542 2233 3 67 6999997 67886643
No 165
>PRK06039 ileS isoleucyl-tRNA synthetase; Reviewed
Probab=40.78 E-value=23 Score=40.48 Aligned_cols=46 Identities=17% Similarity=0.154 Sum_probs=31.6
Q ss_pred CceEEEee-CCCCcchhhhHHHHHHH--HHHHhc--cCcEEE-EEeccceec
Q 018259 78 KKRIVSGV-QPTGSIHLGNYLGAIKN--WIALQN--SYETLF-FIVDLHAIT 123 (359)
Q Consensus 78 ~~~i~sGi-~PTG~lHLGnyig~i~~--~~~lQ~--~~~~~i-~IADlhA~t 123 (359)
++.++.|. -+||.+|+||.+....+ +.+++. |+++.+ .--|-|.+-
T Consensus 42 ~f~i~~~PPy~nG~lH~GH~l~~t~kD~i~Ry~rm~G~~v~~~~GwD~~GlP 93 (975)
T PRK06039 42 EFVFYDGPPTANGLPHYGHLLTRTIKDVVPRYKTMKGYKVERRAGWDTHGLP 93 (975)
T ss_pred CEEEeCCCCCCCCCccHhhhHhhHHHHHHHHHHHhCCCcccCcCCcCCCccH
Confidence 57788887 68899999998864422 445554 788765 444666663
No 166
>PLN02610 probable methionyl-tRNA synthetase
Probab=39.21 E-value=12 Score=41.97 Aligned_cols=44 Identities=18% Similarity=0.193 Sum_probs=25.4
Q ss_pred ccCCceecCCCCcccccCCCCCCcCCCCCCCCCCeeecCC------CHHHHHHHhhhc
Q 018259 260 FKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLD------PKDVIANKIKRC 311 (359)
Q Consensus 260 ~~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~~s~I~L~D------~p~~I~kKI~rA 311 (359)
++.|..++.. ..+ .+ +| +|||||. ++.|+..| .+|.++--+.+.
T Consensus 330 ~~~p~~i~~~--g~l-~~-eG-~KMSKS~---GNvV~p~~~i~~~yg~D~lRyyLl~~ 379 (801)
T PLN02610 330 WTMMKTISVT--EYL-NY-EG-GKFSKSK---GVGVFGNDAKDTNIPVEVWRYYLLTN 379 (801)
T ss_pred cCCCCEEEec--cCE-ec-CC-ceecCcC---CcccCHHHHHhccCCchHhHHHhhhc
Confidence 4467666542 223 22 67 6999997 67776543 234455445543
No 167
>PRK14534 cysS cysteinyl-tRNA synthetase; Provisional
Probab=38.17 E-value=17 Score=38.42 Aligned_cols=66 Identities=20% Similarity=0.099 Sum_probs=37.4
Q ss_pred HhhhhhhcccceeecccchH-HHHHHHHHHHHHhhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCcCCC
Q 018259 208 MASDILLYQSDFVPVGEDQK-QHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSK 286 (359)
Q Consensus 208 QAADIl~~~adivpvG~DQ~-~hieLaRdia~k~n~~~g~~~~~~~~~~~~~~~~~P~~l~~~~~~~l~sL~dg~~KMSK 286 (359)
|+...|--.-||.-+|.|-. ||+|-=+-.+.-.+ |.. .+...++. .++ -+ +| +||||
T Consensus 225 m~~~~lg~~~DIH~GG~DliFPHHene~Aqs~a~~---g~~--------------~~~~W~H~--g~l-~~-~g-~KMSK 282 (481)
T PRK14534 225 MNLEYFKSTLDIHLGGVDHIGVHHINEIAIAECYL---NKK--------------WCDMFVHG--EFL-IM-EY-EKMSK 282 (481)
T ss_pred HHHHHcCCcceEEecccccCCCcchhHHHHHhhhc---CCC--------------cceEEEEe--cEE-Ee-cC-ceecc
Confidence 44444444579999999976 56665443333222 321 13333331 222 23 55 79999
Q ss_pred CCCCCCCeeecC
Q 018259 287 SAPSDQSRINLL 298 (359)
Q Consensus 287 S~p~~~s~I~L~ 298 (359)
|. +|.|.+.
T Consensus 283 Sl---GN~i~l~ 291 (481)
T PRK14534 283 SN---NNFITIK 291 (481)
T ss_pred cC---CCcccHH
Confidence 97 6788874
No 168
>COG2442 Uncharacterized conserved protein [Function unknown]
Probab=35.39 E-value=41 Score=26.91 Aligned_cols=38 Identities=11% Similarity=0.217 Sum_probs=31.2
Q ss_pred cCCCCCCcccCCCCCCCcchHHHHHHHcCCCCHHHHHHHhccC
Q 018259 312 KTDSSAGLEFDNLERPECNNLLSIYQLISGKTKGEVAEECQNM 354 (359)
Q Consensus 312 ~Td~~~~i~~~~~~~p~v~nl~~i~~~~~~~~~~~v~~~~~~~ 354 (359)
.|+++|++. +.|-.|.+++.+++ .|.+.+|+.+.|-+.
T Consensus 19 i~gGkP~I~---GtRI~V~~Il~~l~--~G~s~eeil~dyp~L 56 (79)
T COG2442 19 ICGGKPCIR---GTRIPVWDILEMLA--AGESIEEILADYPDL 56 (79)
T ss_pred ccCCcceEe---CceecHHHHHHHHH--CCCCHHHHHHhCCCC
Confidence 477788776 67888999999998 789999999988643
No 169
>PLN02882 aminoacyl-tRNA ligase
Probab=34.28 E-value=26 Score=40.85 Aligned_cols=46 Identities=22% Similarity=0.195 Sum_probs=31.8
Q ss_pred CceEEEee-CCCCcchhhhHHHHHHH--HHHHhc--cCcEEE-EEeccceec
Q 018259 78 KKRIVSGV-QPTGSIHLGNYLGAIKN--WIALQN--SYETLF-FIVDLHAIT 123 (359)
Q Consensus 78 ~~~i~sGi-~PTG~lHLGnyig~i~~--~~~lQ~--~~~~~i-~IADlhA~t 123 (359)
++.++.|- -+||.+|+||.+....+ +.+++. |++|.+ .--|-|.+-
T Consensus 39 ~f~~~dgPPyanG~~HiGH~~~~~ikDii~Ry~rm~G~~V~~~~GwD~hGlP 90 (1159)
T PLN02882 39 EYIFYDGPPFATGLPHYGHILAGTIKDIVTRYQSMTGHHVTRRFGWDCHGLP 90 (1159)
T ss_pred CEEEeCCCCCCCCcchhhHHHHHHHHHHHHHHHHcCCCcccccCccCCCCcH
Confidence 46777776 57899999998865422 555654 788754 556777763
No 170
>PRK14535 cysS cysteinyl-tRNA synthetase; Provisional
Probab=34.27 E-value=18 Score=39.92 Aligned_cols=100 Identities=22% Similarity=0.185 Sum_probs=51.8
Q ss_pred hHHHhhhhhhcccceeecccchH-HHHHHHHHHHHHhhhhhCCc-cccccCCCCCccccC-C-----ceecCCCCccccc
Q 018259 205 PVLMASDILLYQSDFVPVGEDQK-QHLELTRELAERVNYLYGGR-KWKKLGGRGGAIFKV-P-----EPLIPPAGARVMS 276 (359)
Q Consensus 205 PvLQAADIl~~~adivpvG~DQ~-~hieLaRdia~k~n~~~g~~-~~~~~~~~~~~~~~~-P-----~~l~~~~~~~l~s 276 (359)
...|+...|--.-||.-+|.|-. ||+|= |+|+..- ..|.. ..... ...+.. | .-++. .+|.
T Consensus 435 CSAMs~~~LG~~~DIHgGG~DLiFPHHEN--EiAQseA-~~g~~~~~~~~----~~~~~~~~~~~aryWmHn---G~V~- 503 (699)
T PRK14535 435 CSAMSENLFGDTFDIHGGGADLQFPHHEN--EIAQSVG-ATGHTCGHHHA----QTHHGQSIASHVKYWLHN---GFIR- 503 (699)
T ss_pred HHHHHHHHcCCcceeECCccccCCCCCcc--HHHHHHH-hhCCCcccccc----cccccccccccccEEEEC---CeEe-
Confidence 34566666666789999999964 77775 5555422 12320 00000 000000 1 12333 3343
Q ss_pred CCCCCCcCCCCCCCCCCeeecCC-----CHHHHHHHhhhccCCCCCCcccC
Q 018259 277 LTDGLSKMSKSAPSDQSRINLLD-----PKDVIANKIKRCKTDSSAGLEFD 322 (359)
Q Consensus 277 L~dg~~KMSKS~p~~~s~I~L~D-----~p~~I~kKI~rA~Td~~~~i~~~ 322 (359)
+ +| +|||||. +|.|.+.| +|+.++-=+.. +..+..+.+.
T Consensus 504 v-dG-eKMSKSL---GN~it~~dlLe~ygpdalRl~lLs--shYRspL~fS 547 (699)
T PRK14535 504 V-DG-EKMSKSL---GNFFTIREVLKQYDPEVVRFFILR--AHYRSPLNYS 547 (699)
T ss_pred e-CC-CccCCCC---CCcCCHHHHHHhCCHHHHHHHHHc--CCCCCCCCcC
Confidence 4 67 7999997 67776654 55555544443 3344444444
No 171
>PTZ00399 cysteinyl-tRNA-synthetase; Provisional
Probab=33.94 E-value=2e+02 Score=31.58 Aligned_cols=63 Identities=16% Similarity=0.160 Sum_probs=36.9
Q ss_pred CcchhhhHHHHHH--HHHHH-h--ccCcEEEE--EeccceecC------CCC-HH-HHHHHHHHHHHHHHHcCcCCCc
Q 018259 89 GSIHLGNYLGAIK--NWIAL-Q--NSYETLFF--IVDLHAITL------PYD-TQ-QLSKATRETAAIYLACGIDNSK 151 (359)
Q Consensus 89 G~lHLGnyig~i~--~~~~l-Q--~~~~~~i~--IADlhA~t~------~~~-~~-~l~~~~~~~~~~~lA~GlDp~k 151 (359)
+.+||||....+. -+.++ + .|++|.++ |.|.---+. ..+ +. ..+.++..+..++.++|+.+..
T Consensus 72 d~~HiGhart~v~~Dil~R~l~~~~Gy~V~~v~nitDidDKIi~~A~~~g~~~~~el~~~~~~~f~~d~~~Lni~~p~ 149 (651)
T PTZ00399 72 DSSHLGHARTYVTFDIIRRILEDYFGYDVFYVMNITDIDDKIIKRAREEKLSIFLELARKWEKEFFEDMKALNVRPPD 149 (651)
T ss_pred CCcccccchHHHHHHHHHHHHHHhcCCceEEEeCCCCcchHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHcCCCCCc
Confidence 7799999776442 23333 3 27888664 333322211 123 43 3445667888899999987653
No 172
>PTZ00427 isoleucine-tRNA ligase, putative; Provisional
Probab=33.80 E-value=28 Score=40.87 Aligned_cols=46 Identities=22% Similarity=0.188 Sum_probs=31.1
Q ss_pred CceEEEee-CCCCcchhhhHHHHHH--HHHHHhc--cCcEEE-EEeccceec
Q 018259 78 KKRIVSGV-QPTGSIHLGNYLGAIK--NWIALQN--SYETLF-FIVDLHAIT 123 (359)
Q Consensus 78 ~~~i~sGi-~PTG~lHLGnyig~i~--~~~~lQ~--~~~~~i-~IADlhA~t 123 (359)
++.++.|- -+||.+|+||.+.... -+.+++. |+++.+ .--|-|.+-
T Consensus 103 ~Fv~~~gPPyanG~lHiGHal~~tikDii~Ry~rm~G~~V~~~~GwD~hGlP 154 (1205)
T PTZ00427 103 AYIFYDGPPFATGLPHYGHLLAGIIKDCVTRYFYQCGFSVERKFGWDCHGLP 154 (1205)
T ss_pred cEEEecCCCCCCCCcchhHHHHHHHHHHHHHHHHcCCCeeccCCccCCCCcH
Confidence 35667776 6789999999885442 2445554 788865 455667663
No 173
>PLN02413 choline-phosphate cytidylyltransferase
Probab=28.39 E-value=1.2e+02 Score=30.28 Aligned_cols=34 Identities=24% Similarity=0.392 Sum_probs=20.7
Q ss_pred CCCCCCCCCCCceEEEeeCCCCc---chhhhHHHHHHHHHHH
Q 018259 68 TAPVASSSSVKKRIVSGVQPTGS---IHLGNYLGAIKNWIAL 106 (359)
Q Consensus 68 ~~~~~~~~~~~~~i~sGi~PTG~---lHLGnyig~i~~~~~l 106 (359)
.++.++...++.+||+- |. +|.||. -.|++..++
T Consensus 17 ~~~~~~~~~r~~rVyvd----G~FDLfH~GHi-r~L~qAK~l 53 (294)
T PLN02413 17 ATPSSSPSDRPVRVYAD----GIYDLFHFGHA-RSLEQAKKL 53 (294)
T ss_pred CCCCCCCCCCceEEEEe----CchhhCCHHHH-HHHHHHHHh
Confidence 44445555667777764 53 999996 335555443
No 174
>COG1908 FrhD Coenzyme F420-reducing hydrogenase, delta subunit [Energy production and conversion]
Probab=27.89 E-value=2e+02 Score=25.22 Aligned_cols=68 Identities=18% Similarity=0.184 Sum_probs=43.5
Q ss_pred EeeCCCCcchhhhHHHHHHHHHHHhccCcEEEE----EeccceecCCCCHHHHHHHHHHHHHHHHHcCcCCCccEEEEcc
Q 018259 83 SGVQPTGSIHLGNYLGAIKNWIALQNSYETLFF----IVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQS 158 (359)
Q Consensus 83 sGi~PTG~lHLGnyig~i~~~~~lQ~~~~~~i~----IADlhA~t~~~~~~~l~~~~~~~~~~~lA~GlDp~kt~i~~qS 158 (359)
+-+.=||++---. -+..|++|.|-+++ ++|-|=..++.. .+++.+...+.+..+||+|+++.++|-|
T Consensus 33 Irv~CsGrvn~~f------vl~Al~~GaDGV~v~GC~~geCHy~~GN~k---a~rR~~~lke~l~elgie~eRv~~~wiS 103 (132)
T COG1908 33 IRVMCSGRVNPEF------VLKALRKGADGVLVAGCKIGECHYISGNYK---AKRRMELLKELLKELGIEPERVRVLWIS 103 (132)
T ss_pred EEeeccCccCHHH------HHHHHHcCCCeEEEecccccceeeeccchH---HHHHHHHHHHHHHHhCCCcceEEEEEEe
Confidence 4556677765322 23347787775443 667776665553 4445555556667789999999988766
Q ss_pred C
Q 018259 159 H 159 (359)
Q Consensus 159 ~ 159 (359)
.
T Consensus 104 a 104 (132)
T COG1908 104 A 104 (132)
T ss_pred h
Confidence 4
No 175
>COG0525 ValS Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=27.31 E-value=21 Score=40.33 Aligned_cols=16 Identities=50% Similarity=0.580 Sum_probs=11.7
Q ss_pred CCCCcCCCCCCCCCCeeecC
Q 018259 279 DGLSKMSKSAPSDQSRINLL 298 (359)
Q Consensus 279 dg~~KMSKS~p~~~s~I~L~ 298 (359)
+| +|||||. ||.|...
T Consensus 522 ~G-~KMSKS~---GNvIDP~ 537 (877)
T COG0525 522 QG-RKMSKSK---GNVIDPL 537 (877)
T ss_pred CC-CCCcccC---CCcCCHH
Confidence 56 7999997 6777433
No 176
>PRK05379 bifunctional nicotinamide mononucleotide adenylyltransferase/ADP-ribose pyrophosphatase; Provisional
Probab=26.38 E-value=2.2e+02 Score=28.45 Aligned_cols=72 Identities=19% Similarity=0.303 Sum_probs=37.0
Q ss_pred CceEEEe-eCCCCcchhhhHHHHHHHHHHHhccCcEEEEEecc---ceecCCCCHHHHHHHHHHHHHHHHHcCcCCCccE
Q 018259 78 KKRIVSG-VQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDL---HAITLPYDTQQLSKATRETAAIYLACGIDNSKAS 153 (359)
Q Consensus 78 ~~~i~sG-i~PTG~lHLGnyig~i~~~~~lQ~~~~~~i~IADl---hA~t~~~~~~~l~~~~~~~~~~~lA~GlDp~kt~ 153 (359)
+..+|.| ||| +|+||... ++...+. .-+++|.++.- |..-++.+.++-.+.+ ...++ +++..++.
T Consensus 7 ~~~~~~G~F~P---~H~GHl~~-i~~a~~~--~d~l~v~i~s~~~~~~~~~~~~~~~R~~mi----~~~~~-~~~~~r~~ 75 (340)
T PRK05379 7 DYLVFIGRFQP---FHNGHLAV-IREALSR--AKKVIVLIGSADLARSIKNPFSFEERAQMI----RAALA-GIDLARVT 75 (340)
T ss_pred eEEEEeeccCC---CCHHHHHH-HHHHHHH--CCEEEEEEccCCCCCcCCCCCCHHHHHHHH----HHHhh-cCCCceEE
Confidence 3456666 577 89999644 3444222 22467777532 2222333444433333 33333 77777776
Q ss_pred EEEccCc
Q 018259 154 VFVQSHV 160 (359)
Q Consensus 154 i~~qS~~ 160 (359)
|+-=.|.
T Consensus 76 ~~pi~d~ 82 (340)
T PRK05379 76 IRPLRDS 82 (340)
T ss_pred EEECCCC
Confidence 6554443
No 177
>PRK01153 nicotinamide-nucleotide adenylyltransferase; Provisional
Probab=24.01 E-value=3.1e+02 Score=24.70 Aligned_cols=26 Identities=27% Similarity=0.276 Sum_probs=15.1
Q ss_pred eCCCCcchhhhHHHHHHHHHHHhccCc-EEEEEe
Q 018259 85 VQPTGSIHLGNYLGAIKNWIALQNSYE-TLFFIV 117 (359)
Q Consensus 85 i~PTG~lHLGnyig~i~~~~~lQ~~~~-~~i~IA 117 (359)
|+| +|+||.-. ++...+ .++ ++++|+
T Consensus 9 F~P---~H~GHl~~-i~~a~~---~~d~v~v~i~ 35 (174)
T PRK01153 9 FQP---FHKGHLEV-IKWILE---EVDELIIGIG 35 (174)
T ss_pred cCC---CCHHHHHH-HHHHHH---hCCEEEEEec
Confidence 577 99999744 334322 455 455564
No 178
>KOG0432 consensus Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=23.65 E-value=60 Score=36.84 Aligned_cols=36 Identities=28% Similarity=0.355 Sum_probs=24.5
Q ss_pred CCcchhhhHHHHHH--HHHHHhc--cCcEEEEEeccceec
Q 018259 88 TGSIHLGNYLGAIK--NWIALQN--SYETLFFIVDLHAIT 123 (359)
Q Consensus 88 TG~lHLGnyig~i~--~~~~lQ~--~~~~~i~IADlhA~t 123 (359)
||.+||||.++.-. ...++++ |+++.+.-+=.||=+
T Consensus 87 TG~LHiGHALt~aiqD~i~R~~rm~G~~vlw~PG~DHAGI 126 (995)
T KOG0432|consen 87 TGSLHIGHALTVAIQDALARYNRMHGYQVLWVPGTDHAGI 126 (995)
T ss_pred ccccchhHHHHHHHHHHHHHHHHhcCCeeeecCCccccch
Confidence 89999999886432 2334433 677777767777754
No 179
>cd00560 PanC Pantoate-beta-alanine ligase. PanC Pantoate-beta-alanine ligase, also known as pantothenate synthase, catalyzes the formation of pantothenate from pantoate and alanine. PanC belongs to a large superfamily of nucleotidyltransferases that includes , ATP sulfurylase (ATPS), phosphopantetheine adenylyltransferase (PPAT), and the amino-acyl tRNA synthetases. The enzymes of this family are structurally similar and share a dinucleotide-binding domain.
Probab=21.85 E-value=1.1e+02 Score=30.05 Aligned_cols=71 Identities=23% Similarity=0.266 Sum_probs=47.8
Q ss_pred cccceeecccchHHHHHHHHHHHHHhhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCcCCCCCCCCCCe
Q 018259 215 YQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSR 294 (359)
Q Consensus 215 ~~adivpvG~DQ~~hieLaRdia~k~n~~~g~~~~~~~~~~~~~~~~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~~s~ 294 (359)
.++|..-.|..-.|.+++-+++++.++. |..++.. +.+. ..|| .+||+-+
T Consensus 140 v~Pd~~~FG~kd~gq~~~Lk~~~~dl~~--------------------~v~ii~~--~~vr-~~dG-laiSSRN------ 189 (277)
T cd00560 140 VQPDRAYFGEKDAQQLAVIRRMVRDLNL--------------------PVEIVGC--PTVR-EEDG-LALSSRN------ 189 (277)
T ss_pred cCCCeEEECCCccccHHHHHHHHHHcCC--------------------eEEEEcC--Ccee-cCCC-ceEeCCC------
Confidence 3789888899999999999999988762 3333321 1111 1256 6999763
Q ss_pred eecCCCHHHHHHHhhhccCCC
Q 018259 295 INLLDPKDVIANKIKRCKTDS 315 (359)
Q Consensus 295 I~L~D~p~~I~kKI~rA~Td~ 315 (359)
.+|+....+....|-++.+-.
T Consensus 190 ~~Ls~~~r~~A~~l~~~L~~~ 210 (277)
T cd00560 190 VYLSAEERKEALALYRALKAA 210 (277)
T ss_pred CCCCHHHHHHHHHHHHHHHHH
Confidence 577777777777777766544
No 180
>COG0143 MetG Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=21.79 E-value=34 Score=36.81 Aligned_cols=43 Identities=23% Similarity=0.337 Sum_probs=25.6
Q ss_pred cCCceecCCCCcccccCCCCCCcCCCCCCCCCCeeecCC-----CHHHHHHHhhhc
Q 018259 261 KVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLD-----PKDVIANKIKRC 311 (359)
Q Consensus 261 ~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~~s~I~L~D-----~p~~I~kKI~rA 311 (359)
+.|..++.. ..+ -+ +| +|||||. ++.|+..+ ++|.++--+.+.
T Consensus 316 ~lP~~i~ah--g~l-~~-~G-~KmSKSr---G~~V~~~~~~~~~~~D~lRYyL~~~ 363 (558)
T COG0143 316 PLPTRIFAH--GFL-TL-EG-QKMSKSR---GNVVDPDELLEQYGVDALRYYLARE 363 (558)
T ss_pred CCCCEEEee--eeE-EE-CC-ccccccC---CcEEeHHHHHHHcCchHhHHHHHHh
Confidence 357666542 112 22 66 5999997 68887765 555555555443
No 181
>COG4320 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.18 E-value=1.1e+02 Score=31.06 Aligned_cols=27 Identities=41% Similarity=0.703 Sum_probs=19.8
Q ss_pred CcchhhhHHHHHHHHHHHhccCcEEEEEeccce
Q 018259 89 GSIHLGNYLGAIKNWIALQNSYETLFFIVDLHA 121 (359)
Q Consensus 89 G~lHLGnyig~i~~~~~lQ~~~~~~i~IADlhA 121 (359)
|..||||| |+.+.. ...|+|-|+|+.-
T Consensus 63 GD~HLgN~-ga~~~~-----~G~V~f~i~DFDe 89 (410)
T COG4320 63 GDAHLGNF-GAARNS-----KGNVVFKIADFDE 89 (410)
T ss_pred cccccccc-hhhccC-----CCceEEEecccch
Confidence 78999997 654332 3578999999743
Done!