Query 018259
Match_columns 359
No_of_seqs 139 out of 1122
Neff 5.7
Searched_HMMs 29240
Date Mon Mar 25 12:26:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018259.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018259hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3prh_A Tryptophanyl-tRNA synth 100.0 1.8E-78 6.2E-83 604.3 24.1 267 79-359 36-302 (388)
2 3sz3_A Tryptophanyl-tRNA synth 100.0 1.6E-78 5.6E-83 596.4 21.1 272 78-359 6-280 (341)
3 3n9i_A Tryptophanyl-tRNA synth 100.0 5.3E-78 1.8E-82 593.5 23.4 269 78-359 15-285 (346)
4 2yy5_A Tryptophanyl-tRNA synth 100.0 4.5E-74 1.6E-78 566.4 21.0 269 78-358 4-286 (348)
5 1i6k_A TRPRS, tryptophanyl-tRN 100.0 2E-73 6.8E-78 557.8 24.4 266 79-358 2-267 (328)
6 3tzl_A Tryptophanyl-tRNA synth 100.0 5.4E-71 1.8E-75 539.4 22.4 259 78-358 3-264 (322)
7 2el7_A Tryptophanyl-tRNA synth 100.0 2.7E-70 9.3E-75 537.4 23.7 261 79-358 2-269 (337)
8 2g36_A Tryptophanyl-tRNA synth 100.0 1.5E-69 5.2E-74 532.7 21.6 261 77-358 11-278 (340)
9 1yi8_B Tryptophanyl-tRNA synth 100.0 1.3E-68 4.3E-73 528.1 25.8 265 75-357 19-287 (351)
10 3jxe_A Tryptophanyl-tRNA synth 100.0 1.8E-63 6.3E-68 497.2 18.1 250 76-358 71-334 (392)
11 3a04_A Tryptophanyl-tRNA synth 100.0 8.1E-62 2.8E-66 482.9 18.6 249 77-358 69-336 (372)
12 2cyc_A Tyrosyl-tRNA synthetase 100.0 5.6E-61 1.9E-65 477.3 15.3 251 77-358 32-338 (375)
13 2j5b_A Tyrosyl-tRNA synthetase 100.0 1.8E-60 6.1E-65 469.5 17.8 245 77-358 39-308 (348)
14 2cya_A Tyrosyl-tRNA synthetase 100.0 6.6E-60 2.3E-64 467.9 18.3 246 77-358 34-325 (364)
15 3vgj_A Tyrosyl-tRNA synthetase 100.0 1.5E-59 5.1E-64 466.7 20.4 252 77-358 55-333 (373)
16 3tze_A Tryptophanyl-tRNA synth 100.0 5.4E-59 1.9E-63 466.6 18.1 249 76-358 99-369 (406)
17 3hzr_A Tryptophanyl-tRNA synth 100.0 2.9E-58 9.9E-63 458.9 18.2 249 76-358 80-349 (386)
18 3p0j_A Tyrosyl-tRNA synthetase 100.0 2.9E-57 9.9E-62 479.7 22.2 256 77-358 39-325 (690)
19 2cyb_A Tyrosyl-tRNA synthetase 100.0 1.7E-56 5.7E-61 436.6 19.8 243 76-358 30-299 (323)
20 3foc_A Tryptophanyl-tRNA synth 100.0 3.7E-57 1.3E-61 457.7 14.9 249 77-358 90-413 (451)
21 3hv0_A Tryptophanyl-tRNA synth 100.0 1.5E-56 5.1E-61 447.6 16.9 249 77-358 73-346 (393)
22 3i05_A Tryptophanyl-tRNA synth 100.0 8.9E-57 3E-61 449.5 14.0 249 76-358 76-349 (395)
23 2zp1_A Tyrosyl-tRNA synthetase 100.0 9.8E-56 3.3E-60 430.2 18.4 236 76-358 26-286 (314)
24 2yxn_A Tyrosyl-tRNA synthetase 100.0 4.4E-56 1.5E-60 434.0 14.1 241 77-358 32-298 (322)
25 2ip1_A Tryptophanyl-tRNA synth 100.0 2.2E-55 7.6E-60 443.9 16.6 248 77-358 101-375 (432)
26 1r6u_A Tryptophanyl-tRNA synth 100.0 1.9E-55 6.6E-60 444.5 14.0 249 76-358 106-382 (437)
27 2dlc_X Tyrosyl-tRNA synthetase 100.0 2.9E-55 9.9E-60 438.7 11.3 253 77-358 38-321 (394)
28 1n3l_A Tyrosyl-tRNA synthetase 100.0 5.5E-54 1.9E-58 426.6 19.4 244 77-358 34-308 (372)
29 1r6t_A Tryptophanyl-tRNA synth 100.0 1.6E-54 5.6E-59 442.3 15.6 248 77-358 154-429 (477)
30 2pid_A Tyrosyl-tRNA synthetase 100.0 1.2E-53 3.9E-58 422.1 12.2 239 77-358 45-317 (356)
31 2jan_A Tyrosyl-tRNA synthetase 100.0 2.4E-53 8.1E-58 428.7 14.3 240 77-358 31-295 (432)
32 1h3f_A Tyrosyl-tRNA synthetase 100.0 1.4E-51 4.9E-56 416.1 20.8 236 76-357 35-286 (432)
33 1jil_A Tyrrs, tyrosyl-tRNA syn 100.0 3.7E-51 1.3E-55 412.0 17.8 237 77-358 31-294 (420)
34 2ts1_A Tyrosyl-tRNA synthetase 100.0 1.5E-51 5.3E-56 414.4 12.4 238 77-358 29-293 (419)
35 1y42_X Tyrosyl-tRNA synthetase 100.0 1.5E-50 5E-55 404.4 18.8 252 77-358 63-356 (392)
36 3p0j_A Tyrosyl-tRNA synthetase 100.0 1.6E-40 5.5E-45 351.8 19.6 238 72-355 376-643 (690)
37 1nzj_A Hypothetical protein YA 99.2 9.8E-12 3.3E-16 120.0 7.6 190 84-305 11-248 (298)
38 2ja2_A Glutamyl-tRNA synthetas 99.1 8.6E-11 2.9E-15 120.6 8.4 200 84-311 12-287 (498)
39 1j09_A Glutamyl-tRNA synthetas 99.1 4.2E-11 1.4E-15 122.0 5.4 193 85-310 8-272 (468)
40 3afh_A Glutamyl-tRNA synthetas 99.0 9.1E-11 3.1E-15 120.1 3.8 200 79-311 26-285 (488)
41 3al0_C Glutamyl-tRNA(Gln) amid 98.9 6.2E-11 2.1E-15 123.9 -3.0 200 79-311 130-389 (592)
42 2cfo_A Glutamyl-tRNA synthetas 98.8 2.1E-08 7E-13 102.8 12.6 195 83-311 6-277 (492)
43 2o5r_A Glutamyl-tRNA synthetas 98.4 1.7E-06 5.7E-11 88.5 13.1 200 79-311 14-292 (481)
44 4g6z_A Glutamate-tRNA ligase; 98.2 2.2E-05 7.6E-10 80.4 14.4 199 78-310 25-293 (490)
45 3aii_A Glutamyl-tRNA synthetas 98.0 3.7E-05 1.3E-09 79.7 12.1 176 81-288 97-334 (553)
46 4gri_A Glutamate--tRNA ligase; 97.9 3.7E-05 1.3E-09 79.0 10.9 181 80-289 26-279 (512)
47 4dlp_A Aminoacyl-tRNA syntheta 97.6 0.00037 1.3E-08 71.5 11.4 79 79-159 26-119 (536)
48 2d5b_A Methionyl-tRNA syntheta 97.5 0.00051 1.7E-08 69.5 11.9 79 79-159 4-97 (500)
49 1qtq_A GLNRS, protein (glutami 97.5 0.00046 1.6E-08 71.6 11.5 95 79-180 27-130 (553)
50 2hz7_A Glutaminyl-tRNA synthet 97.5 0.00072 2.5E-08 73.2 12.9 75 80-161 68-143 (851)
51 2csx_A Methionyl-tRNA syntheta 97.5 0.00045 1.5E-08 70.0 10.4 79 79-159 6-99 (497)
52 1iq0_A Arginyl-tRNA synthetase 96.8 0.00074 2.5E-08 70.4 4.1 41 79-119 106-152 (592)
53 3tqo_A Cysteinyl-tRNA syntheta 96.2 0.015 5.1E-07 59.1 9.2 72 80-151 28-112 (462)
54 2zue_A Arginyl-tRNA synthetase 95.6 0.01 3.5E-07 62.4 5.3 40 80-119 123-168 (629)
55 3u1f_A Methionyl-tRNA syntheta 95.3 0.068 2.3E-06 54.4 10.2 78 74-151 6-97 (542)
56 3h99_A Methionyl-tRNA syntheta 94.1 0.21 7.1E-06 51.3 10.2 79 78-158 19-111 (560)
57 1irx_A Lysyl-tRNA synthetase; 93.9 0.079 2.7E-06 54.1 6.5 79 78-159 21-129 (523)
58 3kfl_A Methionyl-tRNA syntheta 93.8 0.33 1.1E-05 50.0 11.2 87 71-159 20-120 (564)
59 1rqg_A Methionyl-tRNA syntheta 92.5 0.36 1.2E-05 51.3 9.3 74 78-151 3-91 (722)
60 2x1l_A Methionyl-tRNA syntheta 89.4 1.3 4.4E-05 44.8 9.4 72 86-159 22-106 (524)
61 3u1f_A Methionyl-tRNA syntheta 87.5 0.54 1.9E-05 47.7 5.2 15 216-230 278-292 (542)
62 3kfl_A Methionyl-tRNA syntheta 86.8 0.52 1.8E-05 48.5 4.6 68 215-310 293-368 (564)
63 2x1l_A Methionyl-tRNA syntheta 85.3 0.24 8.4E-06 50.1 1.3 15 215-229 264-278 (524)
64 4arc_A Leucine--tRNA ligase; l 84.7 2.2 7.5E-05 46.5 8.5 73 78-150 54-140 (880)
65 1gax_A Valrs, valyl-tRNA synth 84.7 2 6.9E-05 46.6 8.1 45 78-122 35-85 (862)
66 3fnr_A Arginyl-tRNA synthetase 84.5 0.17 5.8E-06 51.3 -0.4 39 82-120 36-80 (464)
67 3c8z_A Cysteinyl-tRNA syntheta 83.9 4.9 0.00017 39.6 9.9 78 80-159 42-133 (414)
68 1li5_A Cysrs, cysteinyl-tRNA s 83.5 2.3 7.9E-05 42.7 7.5 80 79-159 23-116 (461)
69 1wkb_A Leucyl-tRNA synthetase; 82.9 0.52 1.8E-05 50.5 2.6 83 215-322 602-690 (810)
70 3sp1_A Cysteinyl-tRNA syntheta 82.7 5.5 0.00019 40.7 9.9 74 78-151 42-139 (501)
71 3c8z_A Cysteinyl-tRNA syntheta 81.5 0.53 1.8E-05 46.6 1.9 89 208-322 236-331 (414)
72 1li5_A Cysrs, cysteinyl-tRNA s 80.6 0.84 2.9E-05 45.9 3.0 88 208-322 212-305 (461)
73 3h99_A Methionyl-tRNA syntheta 80.0 0.68 2.3E-05 47.4 2.1 29 279-311 342-375 (560)
74 1wz2_A Leucyl-tRNA synthetase; 79.6 0.75 2.6E-05 50.5 2.4 83 215-322 602-690 (967)
75 1ffy_A Isoleucyl-tRNA syntheta 79.1 1.4 4.9E-05 48.1 4.4 79 214-322 546-634 (917)
76 1ile_A Ilers, isoleucyl-tRNA s 77.6 1.2 4E-05 48.0 3.1 14 215-228 543-556 (821)
77 1gax_A Valrs, valyl-tRNA synth 76.3 0.91 3.1E-05 49.3 1.8 60 215-299 480-541 (862)
78 1ffy_A Isoleucyl-tRNA syntheta 76.1 3 0.0001 45.6 5.8 46 78-123 49-100 (917)
79 2v0c_A Aminoacyl-tRNA syntheta 72.8 5.1 0.00017 43.6 6.6 73 78-150 34-120 (878)
80 1wkb_A Leucyl-tRNA synthetase; 72.0 3.6 0.00012 44.0 5.2 45 78-122 35-85 (810)
81 3sp1_A Cysteinyl-tRNA syntheta 70.5 1.9 6.6E-05 44.1 2.5 32 207-238 244-276 (501)
82 1irx_A Lysyl-tRNA synthetase; 63.8 2.4 8.1E-05 43.1 1.6 84 214-324 228-320 (523)
83 1ile_A Ilers, isoleucyl-tRNA s 61.7 3.6 0.00012 44.1 2.6 45 78-122 39-89 (821)
84 1f7u_A Arginyl-tRNA synthetase 59.4 5.9 0.0002 41.3 3.7 40 80-119 147-192 (607)
85 2v0c_A Aminoacyl-tRNA syntheta 57.0 4.8 0.00016 43.8 2.5 25 215-239 530-555 (878)
86 4arc_A Leucine--tRNA ligase; l 56.9 6.4 0.00022 42.9 3.6 26 215-240 542-568 (880)
87 1wz2_A Leucyl-tRNA synthetase; 56.4 5.2 0.00018 43.9 2.7 46 77-122 34-85 (967)
88 3fnr_A Arginyl-tRNA synthetase 55.6 7.3 0.00025 39.2 3.5 60 216-299 234-298 (464)
89 3oqi_A YVMC, putative uncharac 55.6 39 0.0013 31.5 8.2 82 78-163 29-123 (257)
90 3foc_A Tryptophanyl-tRNA synth 45.7 4.7 0.00016 40.7 0.3 13 220-232 237-249 (451)
91 3oqv_A ALBC; rossman fold, cyc 39.1 52 0.0018 30.5 6.2 84 77-162 28-124 (247)
92 1f7u_A Arginyl-tRNA synthetase 35.0 17 0.00057 37.9 2.3 26 216-241 363-390 (607)
93 1rqg_A Methionyl-tRNA syntheta 30.7 8.3 0.00028 40.9 -0.8 43 261-311 327-374 (722)
No 1
>3prh_A Tryptophanyl-tRNA synthetase; TRPRS, protein biosynthesis, translation, class I tRNA synth rossman fold, high motif, KMSKS motif; 2.80A {Bacillus subtilis}
Probab=100.00 E-value=1.8e-78 Score=604.28 Aligned_cols=267 Identities=49% Similarity=0.795 Sum_probs=246.0
Q ss_pred ceEEEeeCCCCcchhhhHHHHHHHHHHHhccCcEEEEEeccceecCCCCHHHHHHHHHHHHHHHHHcCcCCCccEEEEcc
Q 018259 79 KRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQS 158 (359)
Q Consensus 79 ~~i~sGi~PTG~lHLGnyig~i~~~~~lQ~~~~~~i~IADlhA~t~~~~~~~l~~~~~~~~~~~lA~GlDp~kt~i~~qS 158 (359)
++||||++|||.+|||||+|+|++|++||++++++|+||||||+|++.+++++++++++++++|+|+||||+|++||+||
T Consensus 36 ~ri~sG~~PTG~lHLGhyvGal~~~~~LQ~~~~~~~~IaD~hAlt~~~~~~~lr~~~~~~aa~~lA~GlDp~kt~if~qS 115 (388)
T 3prh_A 36 QTIFSGIQPSGSVTLGNYIGAMKQFVELQHDYNSYFCIVDQHAITVPQDRLELRKNIRNLAALYLAVGLDPEKATLFIQS 115 (388)
T ss_dssp CEEEEEECCCSCCBHHHHHHTHHHHHHTTTTSEEEEEECHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCCTTTEEEEEGG
T ss_pred CeEEEeeCCCCcchHHHHHHHHHHHHHHHccCcEEEEEecceeeecCCCHHHHHHHHHHHHHHHHHhCCChhHeEEEecc
Confidence 46999999999999999999999999999999999999999999998899999999999999999999999999999999
Q ss_pred CcchhhHHHHHHhccCCHHHHhchhhHHHHHhhhCCCCcccccchhhHHHhhhhhhcccceeecccchHHHHHHHHHHHH
Q 018259 159 HVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAE 238 (359)
Q Consensus 159 ~~~~~~eL~w~L~~~~~i~~L~r~~~~k~~~~~~~~~~~~~g~l~YPvLQAADIl~~~adivpvG~DQ~~hieLaRdia~ 238 (359)
+|++|.|++|+|+|.+++++|+|+++||++.+.. +++++|+|+||+||||||++|++|+||||+||+||+|++||||+
T Consensus 116 ~v~~~~el~w~l~~~~~~~~L~R~~~fk~k~~~~--~~~~~g~~~YPvLQAADIl~~~ad~vPvG~DQ~~hleltRdia~ 193 (388)
T 3prh_A 116 EVPAHAQAGWMMQCVAYIGELERMTQFKDKSKGN--EAVVSGLLTYPPLMAADILLYGTDLVPPGEDQKQHLELTRNLAE 193 (388)
T ss_dssp GSTHHHHHHHHHHTTSCHHHHHTTC------------CCBHHHHSCHHHHHHHHHTTTCCEECCCSSCHHHHHHHHHHHH
T ss_pred cccchHHHHHHHHhhccHHHHHhhhhHhHHhhcc--CCCcchhHhhHHHHHHHHHHhCCCEEEechhHHHHHHHHHHHHH
Confidence 9999999999999999999999999999887653 57899999999999999999999999999999999999999999
Q ss_pred HhhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCcCCCCCCCCCCeeecCCCHHHHHHHhhhccCCCCCC
Q 018259 239 RVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRCKTDSSAG 318 (359)
Q Consensus 239 k~n~~~g~~~~~~~~~~~~~~~~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~~s~I~L~D~p~~I~kKI~rA~Td~~~~ 318 (359)
|||+.||. +|.+|++++++.+++||||+||++|||||+|+++|+|+|+|+|++|++|||+|+||+.+.
T Consensus 194 rfn~~y~~------------~f~~p~~li~~~~~~l~gL~dg~~KMSKS~~~~~n~I~L~D~p~~I~kKI~ka~TD~~~~ 261 (388)
T 3prh_A 194 RFNKKYND------------IFTIPEVKIPKVGARIMSLNDPLKKMSKSDPNQKAYITLLDEPKQLEKKIKSAVTDSEGI 261 (388)
T ss_dssp HHHHHTCS------------CCCCCEECCCSCCCCCBCSSCTTSBCCTTCSSTTSCCBTTCCHHHHHHHHHTCCCCSSCC
T ss_pred HhCcccCC------------CcccchhhhcccccccccCCCCCCccCCCCCCCCCeeecCCCHHHHHHHHhhccCCCCCc
Confidence 99999974 388999999876689999988889999999988899999999999999999999999988
Q ss_pred cccCCCCCCCcchHHHHHHHcCCCCHHHHHHHhccCCcccC
Q 018259 319 LEFDNLERPECNNLLSIYQLISGKTKGEVAEECQNMNWGSL 359 (359)
Q Consensus 319 i~~~~~~~p~v~nl~~i~~~~~~~~~~~v~~~~~~~~~g~~ 359 (359)
++++++++|+++|+++||++|++.+++++.++|.+.++|++
T Consensus 262 ~~~~~~~~p~v~~l~~i~~~~~~~~~eel~~~y~g~~~g~l 302 (388)
T 3prh_A 262 VKFDKENKPGVSNLLTIYSILGNTTIEELEAKYEGKGYGEF 302 (388)
T ss_dssp CCCCTTTCHHHHHHHHHHHHHHTCCHHHHHHHTTTCCHHHH
T ss_pred ccCCCCCCCCcchHHHHHHhcCCCcHHHHHHHHcCCCHHHH
Confidence 99999999999999999999999999999999987677753
No 2
>3sz3_A Tryptophanyl-tRNA synthetase; structural genomics, center for structural genomics of infec diseases, csgid, rossmann fold; HET: TRP; 1.50A {Vibrio cholerae o1 biovar el tor}
Probab=100.00 E-value=1.6e-78 Score=596.38 Aligned_cols=272 Identities=44% Similarity=0.750 Sum_probs=254.0
Q ss_pred CceEEEeeCCCCcchhhhHHHHHHHHHHHhccCcEEEEEeccceecCCCCHHHHHHHHHHHHHHHHHcCcCCCccEEEEc
Q 018259 78 KKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQ 157 (359)
Q Consensus 78 ~~~i~sGi~PTG~lHLGnyig~i~~~~~lQ~~~~~~i~IADlhA~t~~~~~~~l~~~~~~~~~~~lA~GlDp~kt~i~~q 157 (359)
+++||+|++|||.+|||||+|+|++|++||++++++|+||||||+|++.+++++++++++++++|+|+||||+|++||+|
T Consensus 6 ~~~v~sG~~PTG~lHLGhy~g~l~~~~~lQ~~~~~~~~iaD~ha~~~~~~~~~~~~~~~~~~~~~lA~GlDp~k~~i~~q 85 (341)
T 3sz3_A 6 KPIVLSGVQPSGELSIGNYLGALRQWQQMQDDYDCQYCVVDLHAITVRQDPQALHEATLDALAICLAVGVDPKKSTLFVQ 85 (341)
T ss_dssp SCEEEEEECSSSCCBHHHHHHTGGGHHHHHHHSEEEEEECHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCCTTTSEEEEG
T ss_pred CCEEEeCcCCCCcccHHHHHHHHHHHHHHHhcCeEEEEEecceeEcCCCCHHHHHHHHHHHHHHHHHcCCChhhcEEEec
Confidence 46999999999999999999999999999999999999999999999889999999999999999999999999999999
Q ss_pred cCcchhhHHHHHHhccCCHHHHhchhhHHHHHhhhCCCCcccccchhhHHHhhhhhhcccceeecccchHHHHHHHHHHH
Q 018259 158 SHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELA 237 (359)
Q Consensus 158 S~~~~~~eL~w~L~~~~~i~~L~r~~~~k~~~~~~~~~~~~~g~l~YPvLQAADIl~~~adivpvG~DQ~~hieLaRdia 237 (359)
|+|++|.+|+|+|+|.+++++|+|+++||++..+.+ +++++|+|+||+|||||||+|++|+||||.||+||+||+||||
T Consensus 86 S~v~~~~el~~~l~~~~~~~~l~R~~~~k~~~~~~~-~~~~~g~~~YP~lQaaDil~~~ad~vpvG~DQ~~hlel~Rdia 164 (341)
T 3sz3_A 86 SHVPEHAQLGWVLNCYTQMGELSRMTQFKDKSARYA-NDVNAGLFGYPVLMAADILLYGAHQVPVGSDQKQHLELARDIA 164 (341)
T ss_dssp GGCTHHHHHHHHHHTTSCHHHHHTCHHHHHHHHHHG-GGCCHHHHHHHHHHHHHHHTTTCSEECCCGGGHHHHHHHHHHH
T ss_pred cchhhhHHHHHHHHhhccHHHHHHHHHHHHHHhhcc-CCCChhhHHhHHHHHHHHHHcCCCEEEeccchHHHHHHHHHHH
Confidence 999999999999999999999999999999877654 5789999999999999999999999999999999999999999
Q ss_pred HHhhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCcCCCCCCCCCCeeecCCCHHHHHHHhhhccCCCCC
Q 018259 238 ERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRCKTDSSA 317 (359)
Q Consensus 238 ~k~n~~~g~~~~~~~~~~~~~~~~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~~s~I~L~D~p~~I~kKI~rA~Td~~~ 317 (359)
+|||+.||.+. .+|++|++++++.+++||||+||++|||||+|+++|+|+|+|+|++|++|||+|+||+.+
T Consensus 165 ~rfn~~yg~~~---------~~f~~p~~li~~~~~~l~gL~dg~~KMSKS~~~~~~~I~L~D~p~~i~kKI~~a~Td~~~ 235 (341)
T 3sz3_A 165 TRFNNIYSPEQ---------PIFTIPEPYIPTVNARVMSLQDATKKMSKSDDNRKNVITLLEDPKSIIKKINKAQTDAET 235 (341)
T ss_dssp HHHHHHHCSSS---------CSSCCCEECCCSCCCCCEETTEEEEECCTTCSCGGGCCBTTCCHHHHHHHHHTCCCCCCS
T ss_pred HHhchhccCCC---------cccccChhhhccCcccccCCCCCCCccCCCCCCCCCeeecCCCHHHHHHHhhhccCCCCC
Confidence 99999998410 148899999886558999998888899999987789999999999999999999999987
Q ss_pred --CcccCCCCCCCcchHHHHHHHcCCCCHHHHHHHhcc-CCcccC
Q 018259 318 --GLEFDNLERPECNNLLSIYQLISGKTKGEVAEECQN-MNWGSL 359 (359)
Q Consensus 318 --~i~~~~~~~p~v~nl~~i~~~~~~~~~~~v~~~~~~-~~~g~~ 359 (359)
.+.++++++|+++|++.||++|++.+++++.++|.+ .+||++
T Consensus 236 ~~~~~~~~~~~p~v~~l~~~~~~~~~~~~e~i~~~~~g~~~~g~~ 280 (341)
T 3sz3_A 236 PPRIAYDVENKAGIANLMGLYSAATGKTFAEIEAQYAGVEMYGPF 280 (341)
T ss_dssp SCCCCCCTTTCHHHHHHHHHHHHHHCCCHHHHHHHTTTCCCSHHH
T ss_pred CcccccCCCCCcchhHHHHHHHHcCCccHHHHHHHHccCCCHHHH
Confidence 577899999999999999999999999999999986 677763
No 3
>3n9i_A Tryptophanyl-tRNA synthetase; tryptophan-tRNA ligase, csgid, structural genomics, niaid, center for structural genomics infectious diseases; 1.95A {Yersinia pestis} SCOP: c.26.1.1
Probab=100.00 E-value=5.3e-78 Score=593.55 Aligned_cols=269 Identities=49% Similarity=0.807 Sum_probs=254.0
Q ss_pred CceEEEeeCCCCcchhhhHHHHHHHHHHHhccCcEEEEEeccceecCCCCHHHHHHHHHHHHHHHHHcCcCCCccEEEEc
Q 018259 78 KKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQ 157 (359)
Q Consensus 78 ~~~i~sGi~PTG~lHLGnyig~i~~~~~lQ~~~~~~i~IADlhA~t~~~~~~~l~~~~~~~~~~~lA~GlDp~kt~i~~q 157 (359)
+++||+|++|||.+|||||+|+|++|++||++++++|+||||||+|++.+++++++++++++++|+|+|+||+|++||+|
T Consensus 15 ~~~i~sG~~PTG~lHLGh~vg~l~~~~~lQ~~~~~~~~iaD~hA~t~~~~~~~~~~~~~~~~~~~lA~GlDp~k~~if~q 94 (346)
T 3n9i_A 15 KPIVFSGAQPSGELTIGNYMGALRQWVQMQDDYDCIYCIVDLHAITARQDPALLRKRTLDTLALYLACGIDPKKSTIFVQ 94 (346)
T ss_dssp CCEEEEEECSCSCCBHHHHHHTHHHHHTTTTTSEEEEEECHHHHTTSCCCHHHHHHHHHHHHHHHHHHTCCTTTSEEEEG
T ss_pred CCEEEECcCCCCcccHHHHHHHHHHHHHHHhhCcEEEEEecceeecCCCCHHHHHHHHHHHHHHHHHcCCCccceEEEec
Confidence 57999999999999999999999999999999999999999999999889999999999999999999999999999999
Q ss_pred cCcchhhHHHHHHhccCCHHHHhchhhHHHHHhhhCCCCcccccchhhHHHhhhhhhcccceeecccchHHHHHHHHHHH
Q 018259 158 SHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELA 237 (359)
Q Consensus 158 S~~~~~~eL~w~L~~~~~i~~L~r~~~~k~~~~~~~~~~~~~g~l~YPvLQAADIl~~~adivpvG~DQ~~hieLaRdia 237 (359)
|+|++|.+++|+|.|.+++++|+|+++||++..+.+ +++++|+|+||+||||||++|++|+||||.||+||+||+||+|
T Consensus 95 S~v~~~~el~~~l~~~~~~~~l~R~~~~k~~~~~~~-~~~~~g~~~YP~lQAaDil~~~ad~vpvG~DQ~~hleltRdia 173 (346)
T 3n9i_A 95 SHVPEHSQLSWALNCYTYFGELSRMTQFKDKSARYA-ENINAGLFDYPVLMAADILLYQTNQVPVGEDQKQHLELSRDIA 173 (346)
T ss_dssp GGCTHHHHHHHHHHTTSBHHHHHTCHHHHHHHHHSG-GGCBHHHHHHHHHHHHHHHTTTCSEECCCGGGHHHHHHHHHHH
T ss_pred cccccchHHHHHHHHHhhHHHHHHHHHHHHHHhccC-CCCCchhHHhHHHHHHHHHHhCceEEEeccchHHHHHHHHHHH
Confidence 999999999999999999999999999999876653 5689999999999999999999999999999999999999999
Q ss_pred HHhhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCcCCCCCCCCCCeeecCCCHHHHHHHhhhccCCCCC
Q 018259 238 ERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRCKTDSSA 317 (359)
Q Consensus 238 ~k~n~~~g~~~~~~~~~~~~~~~~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~~s~I~L~D~p~~I~kKI~rA~Td~~~ 317 (359)
+|||+.||. +|++|++++++.+++||||+||++|||||+++++|+|+|+|+|++|++|||+|+||+.+
T Consensus 174 ~rfn~~yg~------------~f~~p~~li~~~~~~l~gL~dg~~KMSKS~~~~~~~I~L~D~p~~i~kKI~kA~Td~~~ 241 (346)
T 3n9i_A 174 SRFNNLYGD------------IFKIPEPFIPKAGARVMSLQDPTKKMSKSDDNRNNVIELLEDPKSVVKKIKRAMTDSDE 241 (346)
T ss_dssp HHHHHHHSS------------CSCCCEECCCCCCCCCBCSSCTTSBCCTTCSCGGGCCBTTSCHHHHHHHHHTCCCCCCS
T ss_pred HHhccccCC------------cccccchhccCCcccCccCCCCccccCCCCCCCCceecCCCCHHHHHHHHHhCcCCCCC
Confidence 999999984 38899999987668999999998999999986679999999999999999999999986
Q ss_pred --CcccCCCCCCCcchHHHHHHHcCCCCHHHHHHHhccCCcccC
Q 018259 318 --GLEFDNLERPECNNLLSIYQLISGKTKGEVAEECQNMNWGSL 359 (359)
Q Consensus 318 --~i~~~~~~~p~v~nl~~i~~~~~~~~~~~v~~~~~~~~~g~~ 359 (359)
.+.++++++|+++|++.||..|++.+++++.++|.+++||+|
T Consensus 242 ~~~~~~~~~~~p~v~~l~~~~~~~~~~~~eel~~~y~~~~~g~l 285 (346)
T 3n9i_A 242 PALIRYDVEKKAGVSNLLDILSGVTGQSIPELEAQFTGQMYGHL 285 (346)
T ss_dssp SCCCCCCTTTCHHHHHHHHHHHHHHCCCHHHHHHHTTTCCHHHH
T ss_pred CccccCCCCCCCChhHHHHHHHhcCCccHHHHHHHHhCCCHHHH
Confidence 467888999999999999999999999999999998888864
No 4
>2yy5_A Tryptophanyl-tRNA synthetase; aminoaccyl tRNA synthetase, structural genomics, NPPSFA; HET: WSA; 2.55A {Mycoplasma pneumoniae}
Probab=100.00 E-value=4.5e-74 Score=566.37 Aligned_cols=269 Identities=37% Similarity=0.596 Sum_probs=248.6
Q ss_pred CceEEEeeCCCCcchhhhHHHHHHHHHHHhccCcEEEEEeccceecCCCCHHHHHHHHHHHHHHHHHcCcCCCccEEEEc
Q 018259 78 KKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQ 157 (359)
Q Consensus 78 ~~~i~sGi~PTG~lHLGnyig~i~~~~~lQ~~~~~~i~IADlhA~t~~~~~~~l~~~~~~~~~~~lA~GlDp~kt~i~~q 157 (359)
+++||+||+|||.+|||||+|+|++|++||++++++|+||||||+|++.+++++++++++++++|+|+||||+|++||+|
T Consensus 4 ~~~i~sG~~PTG~lHLGn~vg~l~~~~~lQ~~~~~~~~IaD~ha~~~~~d~~~i~~~~~~~~~~~lA~Gldp~k~~if~q 83 (348)
T 2yy5_A 4 MKRALTGIQASGKQHLGNYLGVMQSLIELQEQCQLFVFVADLHSITVDFQPQALKQNNFDLVRTLLAVGLDPQKACLFLQ 83 (348)
T ss_dssp CCEEEEEECCCTTCBHHHHHHTGGGHHHHHHHSEEEEEECHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCCTTTEEEEEG
T ss_pred CeEEEEeeCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEcChhhccCCCCHHHHHHHHHHHHHHHHHhCCChhHeEEEEC
Confidence 57999999999999999999999999999999999999999999999899999999999999999999999999999999
Q ss_pred cCcchhhHHHHHHhccCCHHHHhchhhHHHHHhhhC-----CCCcccccchhhHHHhhhhhhcccceeecccchHHHHHH
Q 018259 158 SHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAG-----GENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLEL 232 (359)
Q Consensus 158 S~~~~~~eL~w~L~~~~~i~~L~r~~~~k~~~~~~~-----~~~~~~g~l~YPvLQAADIl~~~adivpvG~DQ~~hieL 232 (359)
|++++|.+++|+|+|.+++++|+|+.+||++.++.+ .+++++|+|+||+||||||++|++|+||||.||+||+|+
T Consensus 84 S~~~~~~el~w~l~~~~~~~~l~R~~~~k~~~~~~~~~~~~~~~~~~g~~~YPvLQaaDil~~~a~~vpvG~DQ~~~lel 163 (348)
T 2yy5_A 84 SDLLEHSMMGYLMMVQSNLGELQRMTQFKAKKAEQTRNPNGTLNIPTGLLTYPALMAGDILLYQPDIVPVGNDQKQHLEL 163 (348)
T ss_dssp GGCHHHHHHHHHHHHHSBHHHHHHCHHHHTTC-----------CCBTHHHHHHHHHHHHHHTTCCSEEECCGGGHHHHHH
T ss_pred CcccchhHHHHHHHhhccHHHHhchHHHHHHHHhhccccccCCCCChhhhhhHHHHHHHHHHhCccEEEecccHHHHHHH
Confidence 999999999999999999999999999998765432 357899999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCcCCCCCCCCCCeeecCCCHHHHHHHhhhcc
Q 018259 233 TRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRCK 312 (359)
Q Consensus 233 aRdia~k~n~~~g~~~~~~~~~~~~~~~~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~~s~I~L~D~p~~I~kKI~rA~ 312 (359)
+||+|+|||+.||. +|++|++++++.+++||||++|++|||||.++++++|+|+|+|++|++|||+|+
T Consensus 164 ~Rdia~r~n~~yg~------------~f~~P~~l~~~~~~~l~gL~g~~~KMSKS~~n~~~~I~L~D~~~~i~~KI~~a~ 231 (348)
T 2yy5_A 164 TRDLAQRIQKKFKL------------KLRLPQFVQNKDTNRIMDLFDPTKKMSKSSKNQNGVIYLDDPKEVVVKKIRQAT 231 (348)
T ss_dssp HHHHHHHHHHHHCC------------CCCCCEEECCTTTTTCBCSSCTTSBCCSSCSCGGGCCBTTCCHHHHHHHHHTCC
T ss_pred HHHHHHHhhhhccc------------ccCCCeeecccccccccCCCCcchhcCCCCCCCCceEeecCCHHHHHHHHHhCC
Confidence 99999999999983 378999999765589999977778999999754459999999999999999999
Q ss_pred CCCCCCcccCCCCCCCcchHHHHHHHcCCCCHH---------HHHHHhccCCccc
Q 018259 313 TDSSAGLEFDNLERPECNNLLSIYQLISGKTKG---------EVAEECQNMNWGS 358 (359)
Q Consensus 313 Td~~~~i~~~~~~~p~v~nl~~i~~~~~~~~~~---------~v~~~~~~~~~g~ 358 (359)
||+.++++|+++++|+++|++.||.+|++++++ ++.++|.+.++|+
T Consensus 232 td~~~~~~~~~~~~p~v~~~~~~~~~~~~~~~~~~~~~~~~~el~~~~~g~~~~~ 286 (348)
T 2yy5_A 232 TDSFNKIRFASKTQPGVTNMLTILKALLKEPVNQSLTNQLGNDLEAYFSTKSYLD 286 (348)
T ss_dssp CCSSCCCSCCTTTCHHHHHHHHHHHHHTTSGGGHHHHHHHCSCHHHHGGGCCHHH
T ss_pred CCCccccccCCCCCCchhhHHHHHHhCChHhhhhhcccchHHHHHHHHcCCCHHH
Confidence 999988999999999999999999999999999 9999998666665
No 5
>1i6k_A TRPRS, tryptophanyl-tRNA synthetase; class I tRNA synthetase, AARS, induced FIT, ligase; HET: TYM; 1.72A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 1i6l_A* 1i6m_A* 1m83_A* 1mau_A* 1maw_A* 1mb2_A* 2ov4_A* 3fhj_A* 3fi0_A* 1d2r_A 3u1v_A
Probab=100.00 E-value=2e-73 Score=557.80 Aligned_cols=266 Identities=49% Similarity=0.797 Sum_probs=248.1
Q ss_pred ceEEEeeCCCCcchhhhHHHHHHHHHHHhccCcEEEEEeccceecCCCCHHHHHHHHHHHHHHHHHcCcCCCccEEEEcc
Q 018259 79 KRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQS 158 (359)
Q Consensus 79 ~~i~sGi~PTG~lHLGnyig~i~~~~~lQ~~~~~~i~IADlhA~t~~~~~~~l~~~~~~~~~~~lA~GlDp~kt~i~~qS 158 (359)
++||+||+|||.+|||||+|+|++|++||++++++|+|||+||+|++.+++++++++++++++|+|+|+||+|++||+||
T Consensus 2 ~~vysG~~PTG~lHlGn~vg~l~~~~~lQ~g~~~~~~IaD~ha~~~~~~~e~i~~~~~~~~~~~la~Gldp~k~~if~qS 81 (328)
T 1i6k_A 2 KTIFSGIQPSGVITIGNYIGALRQFVELQHEYNCYFCIVDQHAITVWQDPHELRQNIRRLAALYLAVGIDPTQATLFIQS 81 (328)
T ss_dssp CEEEEEECCCSCCBHHHHHHTHHHHHHHTTTSEEEEEECHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCCTTTEEEEEGG
T ss_pred CEEEEeeCCCCcccHHHHHHHHHHHHHHHcCCcEEEEEeCceeecCCCCHHHHHHHHHHHHHHHHHhCCChhhcEEEecC
Confidence 58999999999999999999999999999999999999999999998899999999999999999999999999999999
Q ss_pred CcchhhHHHHHHhccCCHHHHhchhhHHHHHhhhCCCCcccccchhhHHHhhhhhhcccceeecccchHHHHHHHHHHHH
Q 018259 159 HVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAE 238 (359)
Q Consensus 159 ~~~~~~eL~w~L~~~~~i~~L~r~~~~k~~~~~~~~~~~~~g~l~YPvLQAADIl~~~adivpvG~DQ~~hieLaRdia~ 238 (359)
++++|.+++|+++|.+++++|+|+.+||++..+ + +++++|+|+||+||||||++|++|+||||.||+||++++||||+
T Consensus 82 ~~~~~~~l~w~l~~~~~~~~l~r~~~~k~~~~~-~-~~~~~g~f~YPvLQaaDil~~~~~~vpvG~DQ~~~iel~Rdia~ 159 (328)
T 1i6k_A 82 EVPAHAQAAWMLQCIVYIGELERMTQFKEKSAG-K-EAVSAGLLTYPPLMAADILLYNTDIVPVGEDQKQHIELTRDLAE 159 (328)
T ss_dssp GCTHHHHHHHHHHHHSCHHHHHTCHHHHHHHTT-C-SSCCHHHHTHHHHHHHHHHTTTCSEEECCGGGHHHHHHHHHHHH
T ss_pred chhhhhHHHHHHhccccHHHHHHHHHHHHHHhc-c-CCCCchhhccHHHHHHHHHHhCCCEEecccchHHHHHHHHHHHH
Confidence 999999999999999999999999999988764 3 67899999999999999999999999999999999999999999
Q ss_pred HhhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCcCCCCCCCCCCeeecCCCHHHHHHHhhhccCCCCCC
Q 018259 239 RVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRCKTDSSAG 318 (359)
Q Consensus 239 k~n~~~g~~~~~~~~~~~~~~~~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~~s~I~L~D~p~~I~kKI~rA~Td~~~~ 318 (359)
|||+.||. +|++|++++++..++||||++|++|||||.++..++|+|+|+|++|++|||+|+||+.++
T Consensus 160 r~n~~yg~------------~f~~P~~li~~~~~~l~gl~G~~~KMSKS~~n~~~~I~L~d~~~~i~~KI~~a~td~~~~ 227 (328)
T 1i6k_A 160 RFNKRYGE------------LFTIPEARIPKVGARIMSLVDPTKKMSKSDPNPKAYITLLDDAKTIEKKIKSAVTDSEGT 227 (328)
T ss_dssp HHHHHHCS------------CCCCCEEECCSSSSSCBCSSCTTSBCCTTCSCGGGCCBTTCCHHHHHHHHHHCCCCSSCC
T ss_pred HhCccccc------------ccCCCeeeeccccccccCCCCCccCCCCCCCCcCceeeecCCHHHHHHHHHhcCCCCccc
Confidence 99999983 488999999755699999976668999998732234999999999999999999999998
Q ss_pred cccCCCCCCCcchHHHHHHHcCCCCHHHHHHHhccCCccc
Q 018259 319 LEFDNLERPECNNLLSIYQLISGKTKGEVAEECQNMNWGS 358 (359)
Q Consensus 319 i~~~~~~~p~v~nl~~i~~~~~~~~~~~v~~~~~~~~~g~ 358 (359)
+.|++.++|+++|++.||.+|++.+++++.++|.+.++|+
T Consensus 228 ~~~~~~~~p~v~~~~~~~~~~~~~~~~el~~~~~g~~~~~ 267 (328)
T 1i6k_A 228 IRYDKEAKPGISNLLNIYSTLSGQSIEELERQYEGKGYGV 267 (328)
T ss_dssp CCCBTTTBHHHHHHHHHHHHHHCCCHHHHHHHTTTCCHHH
T ss_pred cccCCCCCcchhhHHHHHHHCCchhHHHHHHHHcCCCHHH
Confidence 9999988999999999999999999999999998656654
No 6
>3tzl_A Tryptophanyl-tRNA synthetase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta structure; HET: ADP TRP; 2.15A {Campylobacter jejuni subsp} SCOP: c.26.1.0 PDB: 3m5w_A*
Probab=100.00 E-value=5.4e-71 Score=539.41 Aligned_cols=259 Identities=36% Similarity=0.618 Sum_probs=237.5
Q ss_pred CceEEEeeCCCCcchhhhHHHHHHHHHHHhccCcEEEEEeccceecCCCCHHHHHHHHHHHHHHHHHcCcCCCccEEEEc
Q 018259 78 KKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQ 157 (359)
Q Consensus 78 ~~~i~sGi~PTG~lHLGnyig~i~~~~~lQ~~~~~~i~IADlhA~t~~~~~~~l~~~~~~~~~~~lA~GlDp~kt~i~~q 157 (359)
..+||+||+|||.+|||||+|+|++|++||++++++|+|||+||+|++.+++++++++++++++|+|+|+||+|++||+|
T Consensus 3 ~~~vysG~~PTg~lHlG~~lg~l~~~~~lQ~g~~~~~~iaD~ha~~~~~~~~~l~~~~~~~~~~~lA~Gldp~k~~i~~q 82 (322)
T 3tzl_A 3 AMRVLTGLQPSGDLHIGNYFGAIKQMVDAQEKSQMFMFIANYHAMTSSQDGEKLKQNSLKAAAAFLSLGIDPQKSVFWLQ 82 (322)
T ss_dssp -CCBEEEECCSSCCBHHHHHHTHHHHHHTTTTSCCEEEECHHHHTTTCCCHHHHHHHHHHHHHHHHHTTCCTTTSEEEEG
T ss_pred ceEEEEccCCCccccHHHHHHHHHHHHHHhcCCCEEEEEecCeeecCCCCHHHHHHHHHHHHHHHHHcCCCccceEEEEC
Confidence 35899999999999999999999999999999999999999999999889999999999999999999999999999999
Q ss_pred cCcchhhHHHHHHhccCCHHHHhchhhHHHHHhhhCCCCcccccchhhHHHhhhhhhcccceeecccchHHHHHHHHHHH
Q 018259 158 SHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELA 237 (359)
Q Consensus 158 S~~~~~~eL~w~L~~~~~i~~L~r~~~~k~~~~~~~~~~~~~g~l~YPvLQAADIl~~~adivpvG~DQ~~hieLaRdia 237 (359)
|+|++|.+++|+++|.+++++|+|+.+||++.... +++++|+|+||+||||||++|++|+||||.||+||++++||+|
T Consensus 83 S~~~~~~el~~~l~~~~~~~~l~r~~~~K~~~~~~--~~~~~g~f~YP~LQAaDil~~~~~~vpvG~DQ~~hi~l~Rdia 160 (322)
T 3tzl_A 83 SDVKEVMELYWILSQFTPMGLLERAHSYKDKVAKG--LSASHGLFSYPVLMAADILLFDTRIVPVGKDQIQHVEIARDIA 160 (322)
T ss_dssp GGCTHHHHHHHHHGGGCBHHHHHSCHHHHHHHHTT--CCCBHHHHHHHHHHHHHHHHTTCSEEECCGGGHHHHHHHHHHH
T ss_pred CcchhHHHHHHHHhccCcHHHHHhhhHHHHHHccC--CCCchHHHHHHHHHHHHHHHhCCcEEEeccchHHHHHHHHHHH
Confidence 99999999999999999999999999999877643 5799999999999999999999999999999999999999999
Q ss_pred HHhhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCcCCCCCCCCCCeeecCCCHHHHHHHhhhccCCCCC
Q 018259 238 ERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRCKTDSSA 317 (359)
Q Consensus 238 ~k~n~~~g~~~~~~~~~~~~~~~~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~~s~I~L~D~p~~I~kKI~rA~Td~~~ 317 (359)
+|||+.||. +|++|+.++....++|||| || +|||||.+ |+|+|+|+|++|++||++|+||+.+
T Consensus 161 ~r~n~~~g~------------~f~~P~~~~~~~~~~l~~l-~G-~KMSKS~~---n~I~L~d~p~~i~~KI~~a~td~~~ 223 (322)
T 3tzl_A 161 LKVNNEWGE------------IFTLPEARVNEEVAVVVGT-DG-AKMSKSYQ---NTIDIFSSEKTLKKQISSIVTDSTA 223 (322)
T ss_dssp HHHHHHHCS------------CSCCCEEECCCSSCCCBCT-TS-SBCCGGGT---CCCBSSCCHHHHHHHHHTCCCCCCC
T ss_pred HHhcccccC------------CCCCchhhhccccccccCC-CC-CcCCCCCC---CceecCCCHHHHHHHHHhccCCCcc
Confidence 999999983 3899999986545899999 77 79999985 6899999999999999999999987
Q ss_pred CcccCCCCCCCcchHHHHHHHcCC-CCHHHHHHHhcc--CCccc
Q 018259 318 GLEFDNLERPECNNLLSIYQLISG-KTKGEVAEECQN--MNWGS 358 (359)
Q Consensus 318 ~i~~~~~~~p~v~nl~~i~~~~~~-~~~~~v~~~~~~--~~~g~ 358 (359)
. ++ +++|+++|+++||++|++ .+++++.++|.. .++|+
T Consensus 224 ~--~~-~~~~~~~~v~~~~~~~~~~~~i~~l~~~~~~g~~~~~~ 264 (322)
T 3tzl_A 224 L--ED-PKDHENCNIFKIAKLFLDESGQKELQIRYEKGGEGYGH 264 (322)
T ss_dssp T--TS-CCCGGGCHHHHHHGGGCCHHHHHHHHHHHHHCSCCHHH
T ss_pred c--cC-CCCCcchhHHHHHHHhCChhHHHHHHHHHHcCCCCHHH
Confidence 5 33 567999999999999964 578999999974 45554
No 7
>2el7_A Tryptophanyl-tRNA synthetase; aminoacyl-tRNA synthetase, translation, structural GEN NPPSFA; 2.50A {Thermus thermophilus}
Probab=100.00 E-value=2.7e-70 Score=537.37 Aligned_cols=261 Identities=45% Similarity=0.724 Sum_probs=231.0
Q ss_pred ceEEEeeCCCCcchhhhHHHHHHHHHHHhc-c-CcEEEEEeccceecCC--CCHHHHHHHHHHHHHHHHHcCcCCCccEE
Q 018259 79 KRIVSGVQPTGSIHLGNYLGAIKNWIALQN-S-YETLFFIVDLHAITLP--YDTQQLSKATRETAAIYLACGIDNSKASV 154 (359)
Q Consensus 79 ~~i~sGi~PTG~lHLGnyig~i~~~~~lQ~-~-~~~~i~IADlhA~t~~--~~~~~l~~~~~~~~~~~lA~GlDp~kt~i 154 (359)
++||+||+|||.+|||||+|+|++|++||+ | ++++|+|||+||+|++ .+++.+++++++++++|+|+|+||+|++|
T Consensus 2 ~~vy~G~~PTg~lHlGh~~g~l~~~~~lQ~~G~~~~~~~IaD~~a~~~~~~~~~~~i~~~~~~~~~~~la~Gldp~k~~i 81 (337)
T 2el7_A 2 KRVLSGIQPSGEIHIGNYLGAIKQWVAIGEKLGRDAFFCIVDYHALTNPLAYDPSTLAQRTFEAALVNIAAGLDPEKVTL 81 (337)
T ss_dssp CCEEEEECSCSCCBHHHHHTHHHHHHHHHHHHGGGEEEEECGGGGGGSTTTSCHHHHHHHHHHHHHHHHHHTCCTTTSEE
T ss_pred CEEEEeeCCCCcccHHHHHHHHHHHHHHHhcCCCCEEEEEeCceeecCCCCCCHHHHHHHHHHHHHHHHHhCCChhheEE
Confidence 589999999999999999999999999998 5 9999999999999987 79999999999999999999999999999
Q ss_pred EEccCcchhhHHHHHHhccCCHHHHhchhhHHHHHhhhCCCCcccccchhhHHHhhhhhhcccceeecccchHHHHHHHH
Q 018259 155 FVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTR 234 (359)
Q Consensus 155 ~~qS~~~~~~eL~w~L~~~~~i~~L~r~~~~k~~~~~~~~~~~~~g~l~YPvLQAADIl~~~adivpvG~DQ~~hieLaR 234 (359)
|+||+|++|.+++|+|+|.+++++|+|+.+||++.+. .+++++|+|+||+||||||++|++|+||||.||++|++++|
T Consensus 82 ~~qS~~~~~~el~~~l~~~~~~~~l~r~~~~k~r~~~--~~~~~~g~f~YPvLQaaDil~~~~~lvp~G~DQ~~~i~l~r 159 (337)
T 2el7_A 82 FVQSHVPEHTELSWVFTTLTPLGDLTRMTQFKDKASK--QETVWSGLLMYPVLQAADILIYKADTVPVGEDQVQHIELTR 159 (337)
T ss_dssp EEGGGSTHHHHHHHHHHHTSBHHHHHTSHHHHHHTTS--SSCCBHHHHHHHHHHHHHHHHTTCCEEECCGGGCHHHHHHH
T ss_pred EEcCcchhhHHHHHHHHccCCHHHHHHhHHHHHHhcc--CCCCChHHHHhHHHHHhhHHhhCCcEEEcccchHHHHHHHH
Confidence 9999999999999999999999999999999987653 36789999999999999999999999999999999999999
Q ss_pred HHHHHhhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCcCCCCCCCCCCeeecCCCHHHHHHHhhhccCC
Q 018259 235 ELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRCKTD 314 (359)
Q Consensus 235 dia~k~n~~~g~~~~~~~~~~~~~~~~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~~s~I~L~D~p~~I~kKI~rA~Td 314 (359)
|+|+|||+.||. +|++|+++++..+++|||| ||++|||||.+ |+|+|+|+|++|++||++|+||
T Consensus 160 dla~r~n~~~g~------------~f~~P~~~~~~~~p~l~gl-dG~~KMSKS~~---n~I~L~d~p~~i~~Ki~~a~td 223 (337)
T 2el7_A 160 EIARRFNHLFGE------------TFPEPQALLNPEAPRVPGI-DGKAKMSKSLG---NTIGLLEPEESIWQKIQHLPDD 223 (337)
T ss_dssp HHHHHHHHHHSS------------CCCCCEEECCTTSCCCBCT-TSSSBCCTTTT---CCCBSSSCHHHHHHHHHTCCCC
T ss_pred HHHHHHHhhcCc------------ccCCCeeecccccccccCC-CCccccCCCCC---CeeeCcCCHHHHHHHHHhCCCC
Confidence 999999999983 3788999998655799999 66789999985 5899999999999999999999
Q ss_pred CCCCcccCCCCCCCcchHHHHHHHcCCC-CHHHHHHHhcc--CCccc
Q 018259 315 SSAGLEFDNLERPECNNLLSIYQLISGK-TKGEVAEECQN--MNWGS 358 (359)
Q Consensus 315 ~~~~i~~~~~~~p~v~nl~~i~~~~~~~-~~~~v~~~~~~--~~~g~ 358 (359)
+.+++++++++ |+++|+++||++|++. +++++.++|.. .++|+
T Consensus 224 ~~~~~~~~~~~-p~~~~v~~~~~~~t~~~~i~~l~~~~~~g~~~~~~ 269 (337)
T 2el7_A 224 PQRIRLSDPGD-PERTILFTYLSYFAPKDLVEALKEEYRKAGVGTYV 269 (337)
T ss_dssp C--------------CHHHHHHHHHSCHHHHHHHHHHHHTTCSCHHH
T ss_pred CccccccCCCC-CchhhHHHHHHHcCChHHHHHHHHHHHhCCCCHHH
Confidence 99988887665 9999999999999987 89999999974 45554
No 8
>2g36_A Tryptophanyl-tRNA synthetase; TM0492, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI, ligase; HET: TRP; 2.50A {Thermotoga maritima}
Probab=100.00 E-value=1.5e-69 Score=532.67 Aligned_cols=261 Identities=38% Similarity=0.593 Sum_probs=236.7
Q ss_pred CCceEEEeeCCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEeccceecC-CCCHHHHHHHHHHHHHHHHHcCcCCCccEE
Q 018259 77 VKKRIVSGVQPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITL-PYDTQQLSKATRETAAIYLACGIDNSKASV 154 (359)
Q Consensus 77 ~~~~i~sGi~PTG~lHLGnyig~i~~~~~lQ~-~~~~~i~IADlhA~t~-~~~~~~l~~~~~~~~~~~lA~GlDp~kt~i 154 (359)
..+++|+|++|||.+|||||+|+|++|++||+ |++++++|||+||+|+ +.|++++++++++++++|+|+|+||+|++|
T Consensus 11 ~~~~v~~G~~PTG~lHLGn~~g~l~~~~~lQ~~G~~~~~~IaD~ha~t~~~~dp~~~~~~~~~~~~~~lA~Gldp~k~~i 90 (340)
T 2g36_A 11 HHMRILSGMRPTGKLHIGHLVGALENWVKLQEEGNECFYFVADWHALTTHYDDVSKLKEYTRDLVRGFLACGIDPEKSVI 90 (340)
T ss_dssp -CCEEEEEECCCSSCBHHHHHTHHHHHHHHHHTTCEEEEEECHHHHHHHHTTCCTTHHHHHHHHHHHHHHTTCCTTTSEE
T ss_pred CCCeEEEeeCCCCcccHHhHHHHHHHHHHHHHCCCCEEEEEecceeecCCCCCHHHHHHHHHHHHHHHHHhCCChhHeEE
Confidence 35899999999999999999999999999998 6999999999999997 778889999999999999999999999999
Q ss_pred EEccCcchhhHHHHHHhccCCHHHHhchhhHHH---HHhhhCCCCcccccchhhHHHhhhhhhcccceeecccchHHHHH
Q 018259 155 FVQSHVRAHVELMWLLSSATPIGWLNKMIQFKE---KSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLE 231 (359)
Q Consensus 155 ~~qS~~~~~~eL~w~L~~~~~i~~L~r~~~~k~---~~~~~~~~~~~~g~l~YPvLQAADIl~~~adivpvG~DQ~~hie 231 (359)
|+||+|++|.++.|+|+|.+++++|+|+.+||+ +... .+++++|+|+||+||||||++|++|+||||.||+||++
T Consensus 91 f~qS~~~~~~el~~~l~~~~~v~~l~r~~~~k~~~~r~~~--~~~~~~g~f~YPvLQAaDil~~~~~~vpvG~DQ~~hi~ 168 (340)
T 2g36_A 91 FVQSGVKEHAELALLFSMIVSVSRLERVPTYKEIKSELNY--KDLSTAGFLIYPVLQAADILIYKAEGVPVGEDQVYHIE 168 (340)
T ss_dssp EEGGGCTHHHHHHHHHHTTSCHHHHHTCHHHHTC---------CCCSHHHHTHHHHHHHHHHTTTCSEEEECGGGHHHHH
T ss_pred EECCchHHHHHHHHHHHccCCHHHHHHhHHHHhHHHHhcc--CCCCChHHhhhHHHHHhhHHHhCCCEEEcccchHHHHH
Confidence 999999999999999999999999999999998 5433 25689999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCcCCCCCCCCCCeeecCCCHHHHHHHhhhc
Q 018259 232 LTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRC 311 (359)
Q Consensus 232 LaRdia~k~n~~~g~~~~~~~~~~~~~~~~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~~s~I~L~D~p~~I~kKI~rA 311 (359)
++||+|+|||+.||. +|++|++++... ++|||| ||+ |||||.+ |+|+|+|+|++|++||++|
T Consensus 169 l~rdia~r~n~~yg~------------~f~~P~~~~~~~-~~l~gl-dG~-KMSKS~~---n~I~L~dsp~~i~~Ki~~a 230 (340)
T 2g36_A 169 LTREIARRFNYLYDE------------VFPEPEAILSRV-PKLPGT-DGR-KMSKSYG---NIINLEISEKELEQTILRM 230 (340)
T ss_dssp HHHHHHHHHHHHSCC------------CCCCCEEEECCS-CCCCCT-TSS-CCCGGGT---CCCBTTCCHHHHHHHHHTC
T ss_pred HHHHHHHHhhhhccc------------ccCCchhhhccc-cccCCC-Ccc-ccCCCCC---CeEeeeCCHHHHHHHHHhC
Confidence 999999999999873 388899877544 899999 685 9999985 6899999999999999999
Q ss_pred cCCCCCCcccCCCCCCCcchHHHHHHHcCC-CC-HHHHHHHhccCCccc
Q 018259 312 KTDSSAGLEFDNLERPECNNLLSIYQLISG-KT-KGEVAEECQNMNWGS 358 (359)
Q Consensus 312 ~Td~~~~i~~~~~~~p~v~nl~~i~~~~~~-~~-~~~v~~~~~~~~~g~ 358 (359)
+||+.+.+.+++ ++|+++|+++||++|++ .+ ++++.++|..+++|+
T Consensus 231 ~td~~~~~~~~~-~~p~~~~v~~~~~~f~~~~~~ieel~~~~~~g~~~~ 278 (340)
T 2g36_A 231 MTDPARVRRSDP-GNPENCPVWKYHQAFDISEEESKWVWEGCTTASIGC 278 (340)
T ss_dssp CCCTTCSSTTSC-CCGGGCHHHHHHHHTTCCHHHHHHHHHHHHTTCSCH
T ss_pred CCCcccccccCC-CCCchhHHHHHHHHHCCCHhHHHHHHHHHhcCCCCh
Confidence 999988888876 88999999999999985 44 599999998776654
No 9
>1yi8_B Tryptophanyl-tRNA synthetase; ligase; HET: TRP; 2.10A {Deinococcus radiodurans} PDB: 1yia_B* 1yid_B* 2a4m_A*
Probab=100.00 E-value=1.3e-68 Score=528.10 Aligned_cols=265 Identities=30% Similarity=0.438 Sum_probs=239.1
Q ss_pred CCCCceEEEeeCCCCcchhhhHHHHHHHHHHHhccCcEEEEEeccceecC-CCCHHHHHHHHHHHHHHHHHcCcCCCccE
Q 018259 75 SSVKKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITL-PYDTQQLSKATRETAAIYLACGIDNSKAS 153 (359)
Q Consensus 75 ~~~~~~i~sGi~PTG~lHLGnyig~i~~~~~lQ~~~~~~i~IADlhA~t~-~~~~~~l~~~~~~~~~~~lA~GlDp~kt~ 153 (359)
...+++||+||+|||.+|||||+|+|++|++||+.++++|+|||+||+++ +.+++++++++++++++|+|+|+||+|++
T Consensus 19 ~~~~~~vysG~~PTG~lHLGn~~g~l~~~~~lQ~~~~~~~~IaD~ha~~~~~~~~e~i~~~~~~~~~~~la~Gldp~k~~ 98 (351)
T 1yi8_B 19 TPARPRVLTGDRPTGALHLGHLAGSLQNRVRLQDEAELFVLLADVQALTDHFDRPEQVRENVLAVALDYLAAGLDPQKTT 98 (351)
T ss_dssp --CCSEEEEEECCSSCCBHHHHHHTHHHHHHHTSSSEEEEEECHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCTTTEE
T ss_pred cCCCcEEEEeeCCCCCccHHHHHHHHHHHHHHHHhCCeEEEEecchhhcCCCCCHHHHHHHHHHHHHHHHHhCCChhhcE
Confidence 35678999999999999999999999999999998999999999999998 68999999999999999999999999999
Q ss_pred EEEccCcchhhHHHHHHhccCCHHHHhchhhHHHHHhhhC-CCCcccccchhhHHHhhhhhhcccceeecccchHHHHHH
Q 018259 154 VFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAG-GENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLEL 232 (359)
Q Consensus 154 i~~qS~~~~~~eL~w~L~~~~~i~~L~r~~~~k~~~~~~~-~~~~~~g~l~YPvLQAADIl~~~adivpvG~DQ~~hieL 232 (359)
||+||+|++|.++.|+|+|.+++++|+|+.+||++....+ .+++++|+|+||+||||||++|++|+||||.||+||+++
T Consensus 99 i~~qS~~~~~~el~~~l~~~~~v~~l~r~~~~k~~~~~~~f~~~~~~g~f~YPvLQAaDil~~~~~~vpvG~DQ~~hi~l 178 (351)
T 1yi8_B 99 CVVQSAVPELAELTVYFLNLVTVSHLRQNPTVKAEIAQKGYGERVPAGFFVYPVSQAADIAAFGATLVPVGDDQLPMLEQ 178 (351)
T ss_dssp EEEGGGCTHHHHHHHHHHTTSBHHHHHTCHHHHHHHHHHTCTTCCBHHHHHHHHHHHHHHHHHTCSEEEECGGGHHHHHH
T ss_pred EEEcCchhhHHHHHHHHhccCCHHHHHhhhHHHHHHhhcCCCCCCchHhhhhHHHHHhhHHhcCCCEEEecCCcHHHHHH
Confidence 9999999999999999999999999999999999887553 367899999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCcCCCCCCCCCCeeecCCCHHHHHHHhhhcc
Q 018259 233 TRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRCK 312 (359)
Q Consensus 233 aRdia~k~n~~~g~~~~~~~~~~~~~~~~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~~s~I~L~D~p~~I~kKI~rA~ 312 (359)
+||||+|||+.||. +|++|+++++.. ++|||| ||++|||||.+ |+|+|+|+|++|++||++|+
T Consensus 179 ~rdia~r~n~~yg~------------~f~~P~~~~~~~-~~l~~l-dG~~KMSKS~~---n~I~L~d~p~~i~~Ki~~a~ 241 (351)
T 1yi8_B 179 TREIVRRFNALYAP------------VLAEPQAQLSRV-PRLPGL-DGQAKMSKSLG---NAIALGDSADEVARKVMGMY 241 (351)
T ss_dssp HHHHHHHHHHHTCS------------CSCCCEEEECSS-CSCCCT-TSSSCCCTTTT---CCCBTTCCHHHHHHHHHTCC
T ss_pred HHHHHHHHHhhccc------------ccCCCeeeeecC-ccccCC-CCccccCCCCC---CeecCCCCHHHHHHHHHhcC
Confidence 99999999999973 378899887644 899999 88779999985 58999999999999999999
Q ss_pred CCCCCCcccCCCCCCCcchHHHHHHHcC-CC-CHHHHHHHhccCCcc
Q 018259 313 TDSSAGLEFDNLERPECNNLLSIYQLIS-GK-TKGEVAEECQNMNWG 357 (359)
Q Consensus 313 Td~~~~i~~~~~~~p~v~nl~~i~~~~~-~~-~~~~v~~~~~~~~~g 357 (359)
||+.+.+.+|+++ |+.++++.++.+|+ +. +++++.++|.+++++
T Consensus 242 td~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~ieel~~~~~~g~~~ 287 (351)
T 1yi8_B 242 TDPGHLRASDPGR-VEGNPVFTFLDAFDPDPARVQALKDQYRAGGLG 287 (351)
T ss_dssp CCTTCCSTTSCCC-CTTCTTHHHHHHHCSCHHHHHHHHHHHHHTCCC
T ss_pred CCcccccccCCCC-CccchHHHHHHHHcCChhHHHHHHHHHHcCCCC
Confidence 9998888888665 55666777777776 44 458999999876554
No 10
>3jxe_A Tryptophanyl-tRNA synthetase; adenosine triphosphate, rossmann fold, crystallography, X-RAY, P. horikoshii, aminoacyl-tRNA synthetase; HET: TYM; 3.00A {Pyrococcus horikoshii}
Probab=100.00 E-value=1.8e-63 Score=497.20 Aligned_cols=250 Identities=20% Similarity=0.290 Sum_probs=209.9
Q ss_pred CCCceEEEeeCCCCcchhhhHHHHH-HHHHHHhc--cCcEEEEEeccceecC-C-CCHHHHHHHHHHHHHHHHHcCcCCC
Q 018259 76 SVKKRIVSGVQPTGSIHLGNYLGAI-KNWIALQN--SYETLFFIVDLHAITL-P-YDTQQLSKATRETAAIYLACGIDNS 150 (359)
Q Consensus 76 ~~~~~i~sGi~PTG~lHLGnyig~i-~~~~~lQ~--~~~~~i~IADlhA~t~-~-~~~~~l~~~~~~~~~~~lA~GlDp~ 150 (359)
.++++||+|++|||.+|||||++++ .+| ||+ +++++|+|||+||+++ + .+++++++++++++++|+|+|+||+
T Consensus 71 ~~p~~i~sG~~PTG~lHLGh~v~~~~~~~--lQ~~~g~~~~i~IaD~ha~~~~~~~~~e~i~~~~~~~~~~~lA~GlDp~ 148 (392)
T 3jxe_A 71 GRGFFLYTGRGPSGPMHIGHIIPFFATKW--LQEKFGVNLYIQITDDEKFLFKENLTFDDTKRWAYDNILDIIAVGFDPD 148 (392)
T ss_dssp TCCCEEEEEECCSSCCBHHHHHHHHHHHH--HHHHHCCEEEEEECHHHHHHHCSSCCHHHHHHHHHHHHHHHHTTCCCTT
T ss_pred CCCeEEEeccCCCCchhHHHHHHHHHHHH--HHHhcCCceEEEecchHHhhcCCCCCHHHHHHHHHHHHHHHHHhCcCcc
Confidence 3578999999999999999999986 678 887 7889999999999987 3 6999999999999999999999999
Q ss_pred ccEEEEccCcchhhHHHHHHhccCCHHHHhchhhHHHHHhhhCCCCcccccchhhHHHhhhhhhc-ccceeecccchHHH
Q 018259 151 KASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLY-QSDFVPVGEDQKQH 229 (359)
Q Consensus 151 kt~i~~qS~~~~~~eL~w~L~~~~~i~~L~r~~~~k~~~~~~~~~~~~~g~l~YPvLQAADIl~~-~adivpvG~DQ~~h 229 (359)
|++||+||+|+++.++.|.|++.+++++++++.+|+ +++++|+|+||+||||||+++ ++|+||||.||+||
T Consensus 149 kt~i~~qS~~~~~~~~~~~l~~~~t~~~~~~~~~~~--------~~~~~g~f~YP~LQaaDil~~~~a~~vpvG~DQ~~h 220 (392)
T 3jxe_A 149 KTFIFQNSEFTKIYEMAIPIAKKINFSMAKAVFGFT--------EQSKIGMIFFPAIQIAPTFFERKRCLIPAAIDQDPY 220 (392)
T ss_dssp SEEEEETTTSTHHHHHHHHHHHHSBHHHHHHHHCCC--------TTSBHHHHHHHHHHHGGGGSSSSCEEEEEEGGGHHH
T ss_pred ceEEEECchhHHHHHHHHHHHhhCCHHHHhhhhccC--------CCCchHHHHHHHHHHhhHHhhcCCceeecccchHHH
Confidence 999999999999999999999999999999887654 568999999999999999999 69999999999999
Q ss_pred HHHHHHHHHHhhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCcCCCCCCCCCCeeecCCCHHHHHHHhh
Q 018259 230 LELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIK 309 (359)
Q Consensus 230 ieLaRdia~k~n~~~g~~~~~~~~~~~~~~~~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~~s~I~L~D~p~~I~kKI~ 309 (359)
++++||+|+||| +++|..+++ ++||||+++++|||||.+ +|+|+|+|+|++|++|||
T Consensus 221 l~l~Rdla~r~n------------------~~~p~~l~~---~~l~gLdG~~~KMSKS~~--ns~I~L~D~p~~I~kKI~ 277 (392)
T 3jxe_A 221 WRLQRDFAESLG------------------YYKTAALHS---KFVPSLTSLSGKMSASKP--ETAIYLTDSPEDVEKKVW 277 (392)
T ss_dssp HHHHHHHTGGGT------------------SCCCEEEEE---CCCCCSSCSSSCCCTTSG--GGCCBTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHcC------------------CCCCeeeec---ccccCCCCCccccccCCC--CCeeeCCCCHHHHHHHHH
Confidence 999999999998 346888876 679999555479999996 479999999999999999
Q ss_pred h-ccCCCCCCcccC--CCCCCCcchHHHHHHHcC---CCCHHHHHHHhccC--Cccc
Q 018259 310 R-CKTDSSAGLEFD--NLERPECNNLLSIYQLIS---GKTKGEVAEECQNM--NWGS 358 (359)
Q Consensus 310 r-A~Td~~~~i~~~--~~~~p~v~nl~~i~~~~~---~~~~~~v~~~~~~~--~~g~ 358 (359)
+ |+||+.++++++ .+++|+++|+++||.+|+ +.+++++.++|.++ ++|+
T Consensus 278 k~A~td~~~~~~~~~~~~~~P~~~~~~~~l~~~~~~~~~~~eel~~~~~~G~l~~gd 334 (392)
T 3jxe_A 278 KFTLTGGRPTLKEQREKGGEPEKCVVFKWLEIFFEEDDKKLKERYYACKNGELTCGE 334 (392)
T ss_dssp TCC--------------------CHHHHHHHHTTCCCHHHHHHHHHHHHTTSSCHHH
T ss_pred hhccCCCCcccccccccCCCCchhHHHHHHHHHHcCCcchHHHHHHHHhcCCCCHHH
Confidence 9 999998877764 478999999999999986 35689999999765 5654
No 11
>3a04_A Tryptophanyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, nucleotide-binding, protein biosynthesis; 1.97A {Aeropyrum pernix} PDB: 3a05_A*
Probab=100.00 E-value=8.1e-62 Score=482.86 Aligned_cols=249 Identities=28% Similarity=0.387 Sum_probs=216.1
Q ss_pred CCceEEEeeCCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEeccceecCCC--CHHHHHHHHHHHHHHHHHcCcCCCccE
Q 018259 77 VKKRIVSGVQPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPY--DTQQLSKATRETAAIYLACGIDNSKAS 153 (359)
Q Consensus 77 ~~~~i~sGi~PTG~lHLGnyig~i~~~~~lQ~-~~~~~i~IADlhA~t~~~--~~~~l~~~~~~~~~~~lA~GlDp~kt~ 153 (359)
++++||||++|||.+|||||++++ +|+.+|+ +++++|+||||||+|++. +++.+++++++++++|+|+||||+|++
T Consensus 69 k~~~v~sG~~PTG~lHLGhyv~~~-~~~~lq~~~~~~~~~IaD~ha~t~~~~~~~e~~r~~~~~~~~~~lA~GlDP~kt~ 147 (372)
T 3a04_A 69 ERVAVLTGFMPSGKFHFGHKLTVD-QLIYLQKNGFKVFVAIADAEAFAVRRIGREEAVRIAVEEYIANMIALGLDPKDTE 147 (372)
T ss_dssp CCCEEEEEECCCSCCBHHHHHHHH-HHHHHHHTTCEEEEEECHHHHHHTTCCCHHHHHHHHHHTTHHHHHHHTCCTTTCE
T ss_pred CCCEEEeCcCCCcHhHHHHHHHHH-HHHHHHhCCCeEEEEEecchhhccCCCCCHHHHHHHHHHHHHHHHHcCCChHHcc
Confidence 578999999999999999999864 6667775 899999999999999854 567799999999999999999999999
Q ss_pred EEEccC-cchhhHHHHHHhccCCHHHHhchhhHHHHHhhhCCCCcccccchhhHHHhhhhhh--------cccceeeccc
Q 018259 154 VFVQSH-VRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILL--------YQSDFVPVGE 224 (359)
Q Consensus 154 i~~qS~-~~~~~eL~w~L~~~~~i~~L~r~~~~k~~~~~~~~~~~~~g~l~YPvLQAADIl~--------~~adivpvG~ 224 (359)
||+||+ ..+|.++.|.+++.+++++++++.+ ..+.|.++||+||||||++ |++++||||+
T Consensus 148 if~qS~~~~~~~~l~~~~~~~~~~~~~~~~~~-----------~~~~~~~~yP~lqAaDil~~~~d~~~gy~a~~VPVG~ 216 (372)
T 3a04_A 148 FYFQTNRGTPYFRLIQLFSGKVTAAEMEAIYG-----------ELTPAKMMASLTQAADILHVQLDEYGGYRHVVVPVGA 216 (372)
T ss_dssp EEEGGGSCHHHHHHHHHHTTSSCHHHHHHHHS-----------SCCHHHHHHHHHHHHHHHGGGSGGGTCCCCEEEEEEG
T ss_pred hhhhccchHHHHHHHHHHHhhhhHHHHhhhhh-----------ccCcccccCCcchhHHHhhhcCccccCccceecccch
Confidence 999999 5689999999999999999987642 3578999999999999999 4556999999
Q ss_pred chHHHHHHHHHHHHHhhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCcCCCCCCCCCCeeecCCCHHHH
Q 018259 225 DQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVI 304 (359)
Q Consensus 225 DQ~~hieLaRdia~k~n~~~g~~~~~~~~~~~~~~~~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~~s~I~L~D~p~~I 304 (359)
||+||+|||||||+|||..|+ ++.|..++. +++||| || .|||||++ +|+|+|+|+|++|
T Consensus 217 DQ~~hleltRdiA~rfn~~~~--------------~~~P~~~~~---~~~pgl-dG-~KmS~S~~--ns~I~l~D~p~~i 275 (372)
T 3a04_A 217 DQDPHLRLTRDLADRMAGVVE--------------LERPASTYH---KLQPGL-DG-RKMSSSRP--DSTIFLTDPPEVA 275 (372)
T ss_dssp GGHHHHHHHHHHHHHTTTTSC--------------CCCCEEEEE---CCCBCT-TS-SBCCTTSG--GGSCBTTCCHHHH
T ss_pred hhHHHHHHHHHHHHHhcCccc--------------ccChhhhhh---cccCCC-CC-CccCCCCC--CcccccCCCHHHH
Confidence 999999999999999998775 567888887 669999 77 69999987 5999999999999
Q ss_pred HHHhhhccCCCCCCcccC--CCCCCCcchHHHH--HHHcC-CCCHHHHHHHhccC--Cccc
Q 018259 305 ANKIKRCKTDSSAGLEFD--NLERPECNNLLSI--YQLIS-GKTKGEVAEECQNM--NWGS 358 (359)
Q Consensus 305 ~kKI~rA~Td~~~~i~~~--~~~~p~v~nl~~i--~~~~~-~~~~~~v~~~~~~~--~~g~ 358 (359)
++|||+|+||++.+++.. .|++|+++|++++ |.++. +.+++++.++|+.+ +||+
T Consensus 276 ~kKI~ka~td~~~~~~~~~~~~G~p~~~~i~~~~l~~~~~d~~e~~ei~~~y~~G~l~~ge 336 (372)
T 3a04_A 276 RNKLFRALTGGRATAEEQRRLGGVPEVCSVYHMDLYHLMPDDGEVKHIYTSCRLGKILCGE 336 (372)
T ss_dssp HHHHHTCCCSCCSSHHHHHHHCCCGGGCHHHHHHHHTTCCSHHHHHHHHHHHHTTCCCHHH
T ss_pred HHHHhcCccCCCCCcccccccCCCCchhhHHHHHHHccCCCHHHHHHHHHHHhcCCCCHHH
Confidence 999999999998876653 4788999999875 44444 35789999999755 4554
No 12
>2cyc_A Tyrosyl-tRNA synthetase; tyrosine, tyrrs, aminoacylation, structural genomics; HET: TYR; 2.20A {Pyrococcus horikoshii}
Probab=100.00 E-value=5.6e-61 Score=477.30 Aligned_cols=251 Identities=21% Similarity=0.268 Sum_probs=217.8
Q ss_pred CCceEEEeeCCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEeccceecCC---CCHHHHHHHH-HHHH----HHHHHcCc
Q 018259 77 VKKRIVSGVQPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLP---YDTQQLSKAT-RETA----AIYLACGI 147 (359)
Q Consensus 77 ~~~~i~sGi~PTG~lHLGnyig~i~~~~~lQ~-~~~~~i~IADlhA~t~~---~~~~~l~~~~-~~~~----~~~lA~Gl 147 (359)
++++||+||+|||.+|||||++++++|++||+ |++++|+|||+||++++ .+++++++++ ++++ ++|+|+|+
T Consensus 32 ~~~~vy~G~~PTg~lHlG~yl~~l~~~~~lQ~~G~~~~~~iaD~ha~~~~~~g~~~e~i~~~~~~~~~~~~~~~~la~G~ 111 (375)
T 2cyc_A 32 APLQHYIGFEISGYIHLGTGLMAGAKIADFQKAGIKTRVFLADWHSWINDKLGGDLEVIQEVALKYFKVGMEKSIEVMGG 111 (375)
T ss_dssp CCCBEEEEECCCSCCBHHHHHHHHHHHHHHHHTTCBCEEEECHHHHHHTTGGGGCHHHHHHHHHHTHHHHHHHHHHHTTC
T ss_pred CCcEEEeCCCCCCCcCchHHHHHHHHHHHHHHCCCcEEEEecCcEEEcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 46899999999999999999999999999998 79999999999999985 3899999999 8898 99999999
Q ss_pred CCCccEEEEccCcchhhHHHHHH----hccCCHHHHhchhhHHHHHhhhCCCCcccccchhhHHHhhhhhhcccceeecc
Q 018259 148 DNSKASVFVQSHVRAHVELMWLL----SSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVG 223 (359)
Q Consensus 148 Dp~kt~i~~qS~~~~~~eL~w~L----~~~~~i~~L~r~~~~k~~~~~~~~~~~~~g~l~YPvLQAADIl~~~adivpvG 223 (359)
||+|++||+||+|++|. ++|.+ ++.++++++.|+.+||.+. . .+++++|+|+||+||||||++|++|+||||
T Consensus 112 dp~k~~i~~qS~~~~~~-~~~~~~~~~~~~~~~~~m~~~~~~k~r~--~-~~~i~~g~f~YP~LQaaDil~~~~~~vp~G 187 (375)
T 2cyc_A 112 DPKKVEFVLASEILEKG-DYWQTVIDISKNVTLSRVMRSITIMGRQ--M-GEAIDFAKLIYPMMQVADIFYQGVTIAHAG 187 (375)
T ss_dssp CGGGSEEEETHHHHTBH-HHHHHHHHHHTTSBHHHHHHTGGGGTCC--C-CTTCBTHHHHHHHHHHHHHHHTTCSEEEEE
T ss_pred CccceEEEEcchhhhhh-HHHHHHHHHhceeEHHHHhccchhhhhc--c-CCCCChHHHHHHHHHHHHHHHhCCCeeccc
Confidence 99999999999999998 89987 8999999999999998644 2 256899999999999999999999999999
Q ss_pred cchHHHHHHHHHHHHHhhh---hh-CCccccccCCCCCccccCCceecCCCCcccccCCCC----------------CCc
Q 018259 224 EDQKQHLELTRELAERVNY---LY-GGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDG----------------LSK 283 (359)
Q Consensus 224 ~DQ~~hieLaRdia~k~n~---~~-g~~~~~~~~~~~~~~~~~P~~l~~~~~~~l~sL~dg----------------~~K 283 (359)
.||+||++++||+|+|||+ .| |.. | .|..+.. ++||+|++| ++|
T Consensus 188 ~DQ~~~i~l~rdla~r~n~~~~~~~g~~------------~-~~~~~~~---~~l~gL~g~~~~~~~~~~~~~~~~~~~K 251 (375)
T 2cyc_A 188 MDQRKAHVIAIEVAQKLRYHPIVHEGEK------------L-KPVAVHH---HLLLGLQEPPKWPIESEEEFKEIKAQMK 251 (375)
T ss_dssp GGGHHHHHHHHHHGGGCSSSCEEETTEE------------E-CCEEEEE---CCCBCSSCCSSSSCCSHHHHHHHHHHHB
T ss_pred chHHHHHHHHHHHHHHhCCccccccccc------------C-ccEEecc---ccccCCCCcccccccchhhhhhhhhhhc
Confidence 9999999999999999997 12 210 2 4655554 789999544 489
Q ss_pred CCCCCCCCCCeeecCCCHHHHHHHhhhccCCCCCCcccCCCCCCCcchHHHHHHHcC---------------------CC
Q 018259 284 MSKSAPSDQSRINLLDPKDVIANKIKRCKTDSSAGLEFDNLERPECNNLLSIYQLIS---------------------GK 342 (359)
Q Consensus 284 MSKS~p~~~s~I~L~D~p~~I~kKI~rA~Td~~~~i~~~~~~~p~v~nl~~i~~~~~---------------------~~ 342 (359)
||||.| +|+|+|+|+|++|++||++|+||+.. ++.+..+.|+.+|+ ..
T Consensus 252 MSKS~~--~~~I~L~d~p~~i~~KI~~A~t~~~~---------~~~~~v~~~~~~~~f~~~~~~~~i~~~~~~gg~~~~~ 320 (375)
T 2cyc_A 252 MSKSKP--YSAVFIHDSPEEIRQKLRKAFCPARE---------VRYNPVLDWVEYIIFREEPTEFTVHRPAKFGGDVTYT 320 (375)
T ss_dssp GGGSCG--GGSCBTTCCHHHHHHHHHHSCCCTTC---------CSSCHHHHHHHHTTTSSSSCCEEECCCGGGTCCEEES
T ss_pred ccCCCC--CCeeccCCCHHHHHHHHHHhcCCCCC---------CCCChHHHHHHHHhcCCCCcceeeecchhccCcCChh
Confidence 999987 48999999999999999999999842 34456888888774 35
Q ss_pred CHHHHHHHhccC--Cccc
Q 018259 343 TKGEVAEECQNM--NWGS 358 (359)
Q Consensus 343 ~~~~v~~~~~~~--~~g~ 358 (359)
+++++.++|..+ ++|+
T Consensus 321 ~~~el~~~~~~g~~~~~~ 338 (375)
T 2cyc_A 321 TFEELKRDFAEGKLHPLD 338 (375)
T ss_dssp SHHHHHHHHHTTSSCHHH
T ss_pred HHHHHHHHHHcCCCCHHH
Confidence 799999999764 5554
No 13
>2j5b_A Tyrosyl-tRNA synthetase; ligase, protein biosynthesis, ATP-binding; HET: TYE; 2.20A {Acanthamoeba polyphaga mimivirus}
Probab=100.00 E-value=1.8e-60 Score=469.48 Aligned_cols=245 Identities=21% Similarity=0.257 Sum_probs=201.5
Q ss_pred CCceEEEeeCCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEeccceecCCC---CHHHHHHHHHHHHHHHHHcCcCCCcc
Q 018259 77 VKKRIVSGVQPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPY---DTQQLSKATRETAAIYLACGIDNSKA 152 (359)
Q Consensus 77 ~~~~i~sGi~PTG~lHLGnyig~i~~~~~lQ~-~~~~~i~IADlhA~t~~~---~~~~l~~~~~~~~~~~lA~GlDp~kt 152 (359)
.++++|+||+|||.+|||||++.+++|++||+ |++++++|||+||++++. +++++++++++++++|+|+|+||+|+
T Consensus 39 ~~~~vy~G~~PTg~lHlGhyl~~l~~~~~lQ~~G~~~~~~i~D~~a~~~~~~~~~~e~i~~~~~~~~~~~la~Gldp~k~ 118 (348)
T 2j5b_A 39 RIFTAYNGFEPSGRIHIAQALITVMNTNNMIECGGQMIIYIADWFAKMNLKMNGDINKIRELGRYFIEVFKACGINLDGT 118 (348)
T ss_dssp CCEEEEEEECCCSSCBHHHHHHHHHHHHHHHHTTEEEEEEECHHHHHHTTGGGGCHHHHHHHHHHHHHHHHHTTCCGGGE
T ss_pred CCCEEEeccCCCCCCchhHHHHHHHHHHHHHHcCCcEEEEeccchhhhCCCCCCCHHHHHHHHHHHHHHHHHhcCCccce
Confidence 47899999999999999999999999999998 799999999999999853 89999999999999999999999999
Q ss_pred EEEEccCc-chhhHHHHHHhc----cCCHHHHhchhhHHHHHhhhCCCCcccccchhhHHHhhhhhhc---ccceeeccc
Q 018259 153 SVFVQSHV-RAHVELMWLLSS----ATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLY---QSDFVPVGE 224 (359)
Q Consensus 153 ~i~~qS~~-~~~~eL~w~L~~----~~~i~~L~r~~~~k~~~~~~~~~~~~~g~l~YPvLQAADIl~~---~adivpvG~ 224 (359)
.||+||+| ++|. ++|.+.+ .++++++.++.+++.+.. .+++++|+|+||+||||||++| ++|+||||.
T Consensus 119 ~i~~qs~~~~~~~-~~~~~~~~v~~~~~~~~m~~~~~~~~r~~---~~~i~~g~f~YP~lQaaDil~~~~~~~~~~~~G~ 194 (348)
T 2j5b_A 119 RFIWASEFIASNP-SYIERMLDIAEFSTISRVKRCCQIMGRNE---SDCLKASQIFYPCMQAADVFELVPEGIDICQLGI 194 (348)
T ss_dssp EEEEHHHHHHHCH-HHHHHHHHHHHHHHHHHHTC--------------------CCHHHHHHHHHHHSSTTCCSEECCBG
T ss_pred EEEECCHhhhhhh-HHHHHHHHHHhheeHHHHHhhhhhhhhhc---cCCcChHHHhhHHHHHHHHHHHhcCCCcEEEecc
Confidence 99999998 5666 8998665 888999988888875422 2568999999999999999999 999999999
Q ss_pred chHHHHHHHHHHHHHhhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCcCCCCCCCCCCeeecCCCHHHH
Q 018259 225 DQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVI 304 (359)
Q Consensus 225 DQ~~hieLaRdia~k~n~~~g~~~~~~~~~~~~~~~~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~~s~I~L~D~p~~I 304 (359)
||++|++++||+|+|||+.| |..+.. ++||||+||++|||||.| +|+|+|+|+|++|
T Consensus 195 DQ~~~i~l~Rdia~r~~~~~------------------p~~~~~---~~l~gL~dg~~KMSKS~~--~~~I~L~d~p~~i 251 (348)
T 2j5b_A 195 DQRKVNMLAIEYANDRGLKI------------------PISLSH---HMLMSLSGPKKKMSKSDP--QGAIFMDDTEQEV 251 (348)
T ss_dssp GGHHHHHHHHHHHHHTTCCC------------------CEEEEB---CCCCCTTCSSCCCSTTCG--GGSCBTTCCHHHH
T ss_pred ChHHHHHHHHHHHHHhCCCC------------------ceeecC---ccccCCCCcccccccCCC--CCeEeecCCHHHH
Confidence 99999999999999999542 655444 789999888889999986 4899999999999
Q ss_pred HHHhhhccCCCCCCcccCCCCCCCcchHHHHHHH-------------cCCCCHHHHHHHhccCCccc
Q 018259 305 ANKIKRCKTDSSAGLEFDNLERPECNNLLSIYQL-------------ISGKTKGEVAEECQNMNWGS 358 (359)
Q Consensus 305 ~kKI~rA~Td~~~~i~~~~~~~p~v~nl~~i~~~-------------~~~~~~~~v~~~~~~~~~g~ 358 (359)
++|||+|+||+.. ++ +..+.|+.. ++..+++++.++|.+.++|+
T Consensus 252 ~kKI~ka~td~~~---------~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~~el~~~~~~~~~~~ 308 (348)
T 2j5b_A 252 SEKISRAYCTDET---------FD-NPIFEYIKYLLLRWFGTLNLCGKIYTDIESIQEDFSSMNKRE 308 (348)
T ss_dssp HHHHHHSCCCSSS---------TT-CHHHHHHHHTHHHHHSCEEETTEEESSHHHHHHHHTTSCHHH
T ss_pred HHHHhcccCCCCC---------CC-CchHhHHHHhhhhhhcccccccCCcchHHHHHHHHcccCHHH
Confidence 9999999999853 33 346666554 24578999999999777765
No 14
>2cya_A Tyrosyl-tRNA synthetase; tyrrs, aminoacylation, structural genomics, NPPSFA, national on protein structural and functional analyses; 2.20A {Aeropyrum pernix}
Probab=100.00 E-value=6.6e-60 Score=467.94 Aligned_cols=246 Identities=20% Similarity=0.273 Sum_probs=210.7
Q ss_pred CCceEEEeeCCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEeccceecCC---CCHHHHHHHHHHHHHHHHHcCcCCCcc
Q 018259 77 VKKRIVSGVQPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLP---YDTQQLSKATRETAAIYLACGIDNSKA 152 (359)
Q Consensus 77 ~~~~i~sGi~PTG~lHLGnyig~i~~~~~lQ~-~~~~~i~IADlhA~t~~---~~~~~l~~~~~~~~~~~lA~GlDp~kt 152 (359)
+++++|+||+|||.+|||| ++++++|++||+ |++++|+||||||++++ .+++.+++++++++++|+|+|+||+|+
T Consensus 34 ~~~~iy~G~~PTg~lHlG~-l~~l~~~~~lQ~~G~~~~~~iaD~~a~~~~ps~~~~e~i~~~~~~~~~~~la~G~dp~k~ 112 (364)
T 2cya_A 34 ARIKGYIGYEPSGVAHIGW-LVWMYKVKDLVEAGVDFSVLEATWHAYINDKLGGDMDLIRAAARIVRRVMEAAGVPVERV 112 (364)
T ss_dssp SCCEEEEEECCCSSCBTHH-HHHHHHHHHHHHTTCEEEEEECHHHHHHTTGGGGCHHHHHHHHHHHHHHHHHTTCCGGGC
T ss_pred CCCEEEeccCCCCCccHhH-HHHHHHHHHHHHCCCCEEEEEeCcchhhCCCCCCCHHHHHHHHHHHHHHHHHhCCCccce
Confidence 4689999999999999999 788999999998 79999999999999985 699999999999999999999999999
Q ss_pred EEEEccCcchhhHHHHH----HhccCCHHHHhchhhHHHHHhhhCCCCcccccchhhHHHhhhhhhcccceeecccchHH
Q 018259 153 SVFVQSHVRAHVELMWL----LSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQ 228 (359)
Q Consensus 153 ~i~~qS~~~~~~eL~w~----L~~~~~i~~L~r~~~~k~~~~~~~~~~~~~g~l~YPvLQAADIl~~~adivpvG~DQ~~ 228 (359)
+||+||+|++| +++|. +++.+++++|+|+.+||.+.. ++.++++|+|+||+||||||++|++|+||||.||++
T Consensus 113 ~i~~qS~~~~~-~~~~~~~~~l~~~~t~~~l~r~~~~k~r~~--~~~~i~~g~~~YP~LQaaDil~~~~~~v~~G~DQ~~ 189 (364)
T 2cya_A 113 RFVDAEELASD-KDYWGLVIRVAKRASLARVRRALTIMGRRA--EEAEVDASKLIYPLMQVSDIFYMDLDIALGGMDQRK 189 (364)
T ss_dssp EEEEHHHHHTC-HHHHHHHHHHHHTSCHHHHHTTC------C--CGGGSCTHHHHHHHHHHHHHHHTTCSEEEEEGGGHH
T ss_pred EEEecchhhcc-hHHHHHHHHHHCcCcHHHHHcCchhhhhhc--CCCCccchhhhhHHHHHhhHHhcCCCEEeccchHHH
Confidence 99999999988 67887 999999999999999987654 223589999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhhCCccccccCCCCCccccCCceecCCCCcccccCCC---------------CCCcCCCCCCCCCC
Q 018259 229 HLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTD---------------GLSKMSKSAPSDQS 293 (359)
Q Consensus 229 hieLaRdia~k~n~~~g~~~~~~~~~~~~~~~~~P~~l~~~~~~~l~sL~d---------------g~~KMSKS~p~~~s 293 (359)
|++++||+|+|||+ +.|..++. ++||+|++ |.+|||||++ +|
T Consensus 190 ~~~l~rdla~r~~~------------------~~p~~l~~---~ll~~l~g~~~~~~~~~~~~~~~~g~KMSKS~~--~~ 246 (364)
T 2cya_A 190 AHMLARDVAEKLGR------------------KKPVAIHT---PIISSLQGPGRMEASQGEIDDVLAEVKMSKSKP--ET 246 (364)
T ss_dssp HHHHHHHHHTTTTC------------------CCCEEEEE---CCCBCSSCC----------------CBCCSSSG--GG
T ss_pred HHHHHHHHHHHcCC------------------CCceeecc---ceeeCCCcccccccccccccccccccccCCCCC--CC
Confidence 99999999999983 35776665 77999954 3689999986 58
Q ss_pred eeecCCCHHHHHHHhhhccCCCCCCcccCCCCCCCcchHHHHHHHcC---------------------CCCHHHHHHHhc
Q 018259 294 RINLLDPKDVIANKIKRCKTDSSAGLEFDNLERPECNNLLSIYQLIS---------------------GKTKGEVAEECQ 352 (359)
Q Consensus 294 ~I~L~D~p~~I~kKI~rA~Td~~~~i~~~~~~~p~v~nl~~i~~~~~---------------------~~~~~~v~~~~~ 352 (359)
+|+|+|+|++|++||++|+||+.+ ++.+.++.|+.+|+ ..+++++.++|.
T Consensus 247 ~I~L~d~p~~i~~Ki~~a~td~~~---------~~~~~v~~~~~~~~f~~~~~~~~i~r~~~~G~~~~~~~~~el~~~~~ 317 (364)
T 2cya_A 247 AVFVVDSDDDIRRKIRKAYCPAKQ---------VQGNPVLEIARYILFARDGFTLRVDRPAKYGGPVEYTSYEELERDYT 317 (364)
T ss_dssp SCBTTCCHHHHHHHHHTSCCCTTC---------CTTCHHHHHHHHTTTTSTTCCEECC--------CEESSHHHHHHHHH
T ss_pred EeeccCCHHHHHHHHHhCcCCCCC---------CCCCcHHHHHHHHhcccccCceeeeccccccCCCChHHHHHHHHHHh
Confidence 999999999999999999999854 23445888888754 248999999997
Q ss_pred cC--Cccc
Q 018259 353 NM--NWGS 358 (359)
Q Consensus 353 ~~--~~g~ 358 (359)
.+ ++|+
T Consensus 318 ~g~~~~~~ 325 (364)
T 2cya_A 318 DGRLHPLD 325 (364)
T ss_dssp TTCSCHHH
T ss_pred cCCCCHHH
Confidence 64 5554
No 15
>3vgj_A Tyrosyl-tRNA synthetase, putative; tyrrs, ligase; HET: YAP; 2.21A {Plasmodium falciparum}
Probab=100.00 E-value=1.5e-59 Score=466.70 Aligned_cols=252 Identities=21% Similarity=0.253 Sum_probs=212.2
Q ss_pred CCceEEEeeCCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEeccceecCC---CCHHHHHHHHHHHHHHHHHcCcCCCcc
Q 018259 77 VKKRIVSGVQPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLP---YDTQQLSKATRETAAIYLACGIDNSKA 152 (359)
Q Consensus 77 ~~~~i~sGi~PTG~lHLGnyig~i~~~~~lQ~-~~~~~i~IADlhA~t~~---~~~~~l~~~~~~~~~~~lA~GlDp~kt 152 (359)
++++||+||+|||.+||||.+..+.+|++||+ ||+++|+||||||++++ .++++++++++++++.|+|+|+||+|+
T Consensus 55 ~~~~iy~G~~PTg~lHlG~gvl~~~~~~~lQ~~G~~~~~lIaD~ha~i~d~~~~~~~~i~~~~~~~~~~~~a~G~dp~k~ 134 (373)
T 3vgj_A 55 RKLICYDGFEPSGRMHIAQGLLKSIIVNKLTSNGCTFIFWIADWFAHLNNKMSGDLKKIKKVGSYFIEVWKSCGMNMENV 134 (373)
T ss_dssp SSCEEEEEECCCSSCBHHHHHHHHHHHHHHHTTTCEEEEEECHHHHHHTTGGGGCHHHHHHHHHHHHHHHHHTTCCSTTE
T ss_pred CCceEEeCCCCCCCceehhhHHHHHHHHHHHHCCCcEEEEEecceeEecCCCCCCHHHHHHHHHHHHHHHHHcCCChhhe
Confidence 46899999999999999995433346899999 89999999999999973 589999999999999999999999999
Q ss_pred EEEEccCcc-hhhHHHHHHh----ccCCHHHHhchhhHHHHHhhhCCCCcccccchhhHHHhhhhhhcccceeecccchH
Q 018259 153 SVFVQSHVR-AHVELMWLLS----SATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQK 227 (359)
Q Consensus 153 ~i~~qS~~~-~~~eL~w~L~----~~~~i~~L~r~~~~k~~~~~~~~~~~~~g~l~YPvLQAADIl~~~adivpvG~DQ~ 227 (359)
+||+||+|+ +|.+++|.+. ..++++++.++.+|+.+.. + +++++|+|+||+||||||++|++|+||||.||+
T Consensus 135 ~i~~~S~~~~~~~~l~~~~~~~i~~~~tv~rm~~~~~~~~r~~--~-~~~~~g~f~YPlLQaaDil~l~ad~vpgG~DQ~ 211 (373)
T 3vgj_A 135 QFLWASEEINKKPNEYWSLVLDISRSFNINRMKRCLKIMGRSE--G-EENYCSQILYPCMQCADIFFLNVDICQLGIDQR 211 (373)
T ss_dssp EEEEHHHHHHHSHHHHHHHHHHHHTTSBHHHHHTTGGGGTCCT--T-SCCBTHHHHHHHHHHHHHHHTTCSEECCBGGGH
T ss_pred EEEeChhHHhhhhHHHHHHHHHHHccCcHHHHHhhhHHHhhhc--c-CCCChHHHHHHHHHHhcccccCCcEEEcchhhH
Confidence 999999998 8999999765 4789999999988874322 2 578999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCcCCCCCCCCCCeeecCCCHHHHHHH
Q 018259 228 QHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANK 307 (359)
Q Consensus 228 ~hieLaRdia~k~n~~~g~~~~~~~~~~~~~~~~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~~s~I~L~D~p~~I~kK 307 (359)
+|++++||+|+|||+.|+ |..+.. ++||||+||++|||||.| +|+|+|+|+|++|++|
T Consensus 212 ~~l~l~Rdla~r~~~~~~-----------------~~~l~~---p~l~gL~dG~~KMSKS~~--~~~I~L~D~p~~i~~K 269 (373)
T 3vgj_A 212 KVNMLAREYCDIKKIKKK-----------------PVILSH---GMLPGLLEGQEKMSKSDE--NSAIFMDDSESDVNRK 269 (373)
T ss_dssp HHHHHHHHHHHHHTCSCC-----------------CEEEEB---CCCCCSSTTCCSCCSSST--TCCCBTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCC-----------------ceEEeC---CeeecCCCCCCCCcCCCC--CCeeecCCCHHHHHHH
Confidence 999999999999996542 545554 679999899889999986 5899999999999999
Q ss_pred hhhccCCCCCCcccCCCCCCCcc----hHHHHHHHcC------------CCCHHHHHHHhccCC--ccc
Q 018259 308 IKRCKTDSSAGLEFDNLERPECN----NLLSIYQLIS------------GKTKGEVAEECQNMN--WGS 358 (359)
Q Consensus 308 I~rA~Td~~~~i~~~~~~~p~v~----nl~~i~~~~~------------~~~~~~v~~~~~~~~--~g~ 358 (359)
||+|+||+.. .+++|.+. +++.+|..|. ..+++++.++|.+++ +|+
T Consensus 270 I~kA~td~~~-----~~~n~~~~~~~~~~f~~~~~f~~~~~~~~g~~~~~~~~eel~~~~~~g~l~~~d 333 (373)
T 3vgj_A 270 IKKAYCPPNV-----IENNPIYAYAKSIIFPSYNEFNLVRKEKNGGDKTYYTLQELEHDYVNGFIHPLD 333 (373)
T ss_dssp HHHSCCCTTC-----CTTCHHHHHHHHTHHHHHSSEEECCCGGGTCCEEECCHHHHHHHHHTTSSCHHH
T ss_pred HHhCcCCCCC-----CCCCcchhhhhhhhhhhhhhhcccccccccCCcCcccHHHHHHHHHcCCCCHHH
Confidence 9999999753 23445443 2445554442 368999999997654 554
No 16
>3tze_A Tryptophanyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, amino acylation; HET: TRP; 2.60A {Encephalitozoon cuniculi}
Probab=100.00 E-value=5.4e-59 Score=466.63 Aligned_cols=249 Identities=18% Similarity=0.209 Sum_probs=214.8
Q ss_pred CCCceEEEeeCCCC-cchhhhHHHH-HHHHHHHhc--cCcEEEEEeccceecC-CCCHHHHHHHHHHHHHHHHHcCcCCC
Q 018259 76 SVKKRIVSGVQPTG-SIHLGNYLGA-IKNWIALQN--SYETLFFIVDLHAITL-PYDTQQLSKATRETAAIYLACGIDNS 150 (359)
Q Consensus 76 ~~~~~i~sGi~PTG-~lHLGnyig~-i~~~~~lQ~--~~~~~i~IADlhA~t~-~~~~~~l~~~~~~~~~~~lA~GlDp~ 150 (359)
.++++||+|++||| .+|||||+++ +.+| ||+ ++.++|+|||+||++. +.+++++++++++++++|+|+|+||+
T Consensus 99 ~~p~~vy~G~~PTg~~lHLGh~v~~~~~~~--lQ~~~g~~~~i~IaD~~a~l~~~~~~e~i~~~~~~~~~~~lA~GlDp~ 176 (406)
T 3tze_A 99 NRPFYLYTGRGPSSKTMHIGHTIPFLLCKY--MQDAFKIRLVIQITDDEKFLWKSMRLEDAMAYGRENIKDIVTLGFDPK 176 (406)
T ss_dssp TCCEEEEEEECCCSSCCBGGGHHHHHHHHH--HHHHHTCCEEEEECHHHHHHHSSCCHHHHHHHHHHHHHHHHTTTCCGG
T ss_pred CCCeEEEEeeCCCCCcccHHHHHHHHHHHH--HHHhcCCcEEEEeeChHHHcCCCCCHHHHHHHHHHHHHHHHHcCCCcc
Confidence 35789999999999 7999999998 4678 887 5778899999999865 67999999999999999999999999
Q ss_pred ccEEEEccCcchhhHHHHHHhccCCHHHHhchhhHHHHHhhhC-CCCcccccchhhHHHhhhhh--------hcccceee
Q 018259 151 KASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAG-GENVGVALLTYPVLMASDIL--------LYQSDFVP 221 (359)
Q Consensus 151 kt~i~~qS~~~~~~eL~w~L~~~~~i~~L~r~~~~k~~~~~~~-~~~~~~g~l~YPvLQAADIl--------~~~adivp 221 (359)
|+.||.||+|++ .+..++.+|.|+++|+++.++.+ .+++++|+|+||+|||||++ .+++|+||
T Consensus 177 k~~i~~qs~~~~--------~~~~~~~~L~r~~t~~~~~~~~g~~~~~s~g~f~YPlLQaaD~~~~~~p~il~~~a~lvp 248 (406)
T 3tze_A 177 LTYIFSNVEASH--------HFEENILKISKTINLNEAIKVFGFDMSSNIGQVGFPAKEIAPCFSSSFRFIGKGAMCLVP 248 (406)
T ss_dssp GEEEEEHHHHGG--------GGHHHHHHHHHTCBHHHHHHHHCCCTTSBHHHHHHHHHHHGGGSGGGSTTSCTTCEEEEE
T ss_pred ceEEEeccHhHH--------HHHHHHHHHHhhCCHHHHHHhhCCCCCCcchhhhhHHHhhhhhhccchHHhccCCCeEEe
Confidence 999999999986 22346779999999999988765 36789999999999999955 46899999
Q ss_pred cccchHHHHHHHHHHHHHhhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCC-CcCCCCCCCCCCeeecCCC
Q 018259 222 VGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGL-SKMSKSAPSDQSRINLLDP 300 (359)
Q Consensus 222 vG~DQ~~hieLaRdia~k~n~~~g~~~~~~~~~~~~~~~~~P~~l~~~~~~~l~sL~dg~-~KMSKS~p~~~s~I~L~D~ 300 (359)
||.||++|++++||+|+||| +++|..+.. ++|||| ||. +|||||.| +|+|+|+|+
T Consensus 249 vG~DQ~~~i~l~Rdla~r~~------------------~~~p~~l~~---~~l~gL-dG~~~KMSKS~~--~~~I~L~D~ 304 (406)
T 3tze_A 249 AAVDQDPFFRLARDKAKALG------------------EKKPSSIYV---SLLPDL-KGVNRKMSASDP--NSSIYLDDA 304 (406)
T ss_dssp EEGGGHHHHHHHHHHHHHHT------------------CCCCEEEEE---CCCCCT-TSCCCCSSCSCG--GGSCBTTCC
T ss_pred eccchHHHHHHHHHHHHHcC------------------CCCceeecc---CcccCC-CCCCcCCCCCCC--CCcccCCCC
Confidence 99999999999999999998 456877764 779999 665 69999986 589999999
Q ss_pred HHHHHHHhhh-ccCCCCCCccc--CCCCCCCcchHHHHHHHcC--CCCHHHHHHHhccC--Cccc
Q 018259 301 KDVIANKIKR-CKTDSSAGLEF--DNLERPECNNLLSIYQLIS--GKTKGEVAEECQNM--NWGS 358 (359)
Q Consensus 301 p~~I~kKI~r-A~Td~~~~i~~--~~~~~p~v~nl~~i~~~~~--~~~~~~v~~~~~~~--~~g~ 358 (359)
|++|++|||+ |+||++.++++ +++++|+++|+++||++|+ +.+++++.++|..+ ++|+
T Consensus 305 p~~I~kKI~k~A~td~~~~~e~~~~~~g~p~v~~l~~~~~~~~~~~~~~eei~~~y~~G~l~~g~ 369 (406)
T 3tze_A 305 QDTIRKKIIAYAYSGGRKTLEEHREKGGDIDVDVPFEYLKYFLDDDQELEKYRSGYIKGEITSKE 369 (406)
T ss_dssp HHHHHHHHHHHCCCCCCCC-------CCCGGGCHHHHHHHHHCCCHHHHHHHHHHHHTTCSCHHH
T ss_pred HHHHHHHHHhhccCCCcccccccccCCCCCcccHHHHHHHHHcCCcchHHHHHHHHhcCCCCHHH
Confidence 9999999999 99999988777 4689999999999999997 45789999999765 4554
No 17
>3hzr_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, structural genomics, medical structural GEN pathogenic protozoa, MSGPP, ligase; 3.00A {Entamoeba histolytica}
Probab=100.00 E-value=2.9e-58 Score=458.91 Aligned_cols=249 Identities=16% Similarity=0.185 Sum_probs=215.8
Q ss_pred CCCceEEEeeCCCCcchhhhHHHH-HHHHHHHhc--cCcEEEEEeccceecCC-CCHHHHHHHHHHHHHHHHHcCcCCCc
Q 018259 76 SVKKRIVSGVQPTGSIHLGNYLGA-IKNWIALQN--SYETLFFIVDLHAITLP-YDTQQLSKATRETAAIYLACGIDNSK 151 (359)
Q Consensus 76 ~~~~~i~sGi~PTG~lHLGnyig~-i~~~~~lQ~--~~~~~i~IADlhA~t~~-~~~~~l~~~~~~~~~~~lA~GlDp~k 151 (359)
.++++||+||+|||.+|||||+++ +.+| ||+ ++.++|+|+|+||++.+ .+++++++++++++++|+|+|+||+|
T Consensus 80 ~~~~~vysG~~PTG~lHLGh~v~~~~~~~--lQ~~~g~~v~i~I~D~~a~~~r~~~~e~i~~~~~~~~~~~lA~GlDp~k 157 (386)
T 3hzr_A 80 KKPTFIFIQKYPQKEVALEEYITLEFARY--LQDAFNIQVIIQILDDIKVLNREATINEASKMSNDLMKYILAFGFNEDK 157 (386)
T ss_dssp TCCEEEEEEECCCSSCBGGGHHHHHHHHH--HHHHHCCEEEEEECHHHHHHTTSCCHHHHHHHHHHHHHHHHHTCCCGGG
T ss_pred CCCeEEEeccCCCCCccHHHHHHHHHHHH--HHHhcCCeEEEEeCchHHhhcCCCCHHHHHHHHHHHHHHHHHcCCCCcc
Confidence 347899999999999999999998 5788 888 57788999999999974 79999999999999999999999999
Q ss_pred cEEEEccCcchhhHHHHHHhccCCHHHHhchhhHHHHHhhhC-CCCcccccchhhHHHhhhhh--------hcc-cceee
Q 018259 152 ASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAG-GENVGVALLTYPVLMASDIL--------LYQ-SDFVP 221 (359)
Q Consensus 152 t~i~~qS~~~~~~eL~w~L~~~~~i~~L~r~~~~k~~~~~~~-~~~~~~g~l~YPvLQAADIl--------~~~-adivp 221 (359)
++||+||+|++ .+...+.+|.|+++|+++.+..+ .+++++|+|+||+|||||++ .++ +|+||
T Consensus 158 t~i~~qS~~~~--------~~~~~~~~l~r~~t~~~~~~~~~~~~~~~~g~f~YP~LQaaD~~~~~~pdil~~~~a~~Vp 229 (386)
T 3hzr_A 158 TFIYTDYQYFG--------KMYRTISLVEKATAYNVVQPFFNFEYSDNIGKLASPSIMTASMFSQSYSHFFSSPARCLVL 229 (386)
T ss_dssp EEEEEHHHHHH--------HHHHHHHHHHHHCBHHHHTTTSCCCSSSBHHHHHHHHHHHHTTSGGGCTTTCSSCCEEEEE
T ss_pred eEEEeccHHHH--------HHHHHHHHHHhhccHHHHHHHhCCCCCCchhhHhhHHHHHHHHhhhcchHhhCCCCccccc
Confidence 99999999986 34456788999999999987765 46799999999999999877 356 99999
Q ss_pred cccchHHHHHHHHHHHHHhhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCcCCCCCCCCCCeeecCCCH
Q 018259 222 VGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPK 301 (359)
Q Consensus 222 vG~DQ~~hieLaRdia~k~n~~~g~~~~~~~~~~~~~~~~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~~s~I~L~D~p 301 (359)
||.||+||++++||+|+||| +++|..+.. ++|||| ||.+|||||++ +|+|+|+|+|
T Consensus 230 vG~DQ~~hl~l~Rdla~r~n------------------~~~p~~l~~---~~l~gL-dG~~KMSKSd~--~~~I~L~D~p 285 (386)
T 3hzr_A 230 DSIKNVQFHSIIDQIATTLN------------------FIQPTVLFH---KMVPLL-SGVTKFDIPSD--HNSILLSDNA 285 (386)
T ss_dssp EEGGGHHHHHHHHHHHHHHT------------------CCCCEEEEE---CCCCCT-TCTTCCCCCCT--TTSCBTTCCH
T ss_pred cccchHHHHHHHHHHHHHcC------------------CCCceEeec---CeeeCC-CCCCccCcCCC--CCeeecCCCH
Confidence 99999999999999999999 345755543 789999 66569999986 6999999999
Q ss_pred HHHHHHhhh-ccCCCCCCccc--CCCCCCCcchHHHHHHHcC--CCCHHHHHHHhccC--Cccc
Q 018259 302 DVIANKIKR-CKTDSSAGLEF--DNLERPECNNLLSIYQLIS--GKTKGEVAEECQNM--NWGS 358 (359)
Q Consensus 302 ~~I~kKI~r-A~Td~~~~i~~--~~~~~p~v~nl~~i~~~~~--~~~~~~v~~~~~~~--~~g~ 358 (359)
++|++|||+ |+||++.+.+. ..+++|+++|+++||.+|+ +++++++.++|..+ ++|+
T Consensus 286 ~~i~kKI~k~A~t~g~~Td~~~~~~~g~p~~~~v~~~~~~~~~~~~~~eei~~~~~~G~l~~g~ 349 (386)
T 3hzr_A 286 KQVERKINKLAFSGGRNTTEEHKKLGGQCDIDVSFQLLNIFSSDNAQVKDVEEKYSKGELLSGE 349 (386)
T ss_dssp HHHHHHHHHTSCCCCCSSHHHHHTTCCCGGGCHHHHHHHHHCSCHHHHHHHHHHHHTTCSCHHH
T ss_pred HHHHHHHHHhccCCCCCCcccccccCCCCccchHHHHHHHHcCChhhHHHHHHHHHcCCCCHHH
Confidence 999999999 99999876433 4678999999999999995 45789999999754 5554
No 18
>3p0j_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, tyrrs, pseudod translation, ATP-binding, nucleotide-binding, ligase; HET: TYE; 2.89A {Leishmania major} PDB: 3p0i_A* 3p0h_A*
Probab=100.00 E-value=2.9e-57 Score=479.67 Aligned_cols=256 Identities=21% Similarity=0.315 Sum_probs=214.6
Q ss_pred CCceEEEeeCCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEeccceecCC---CCHHHHHHHHHHHHHHHHHcCcCCCcc
Q 018259 77 VKKRIVSGVQPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLP---YDTQQLSKATRETAAIYLACGIDNSKA 152 (359)
Q Consensus 77 ~~~~i~sGi~PTG~lHLGnyig~i~~~~~lQ~-~~~~~i~IADlhA~t~~---~~~~~l~~~~~~~~~~~lA~GlDp~kt 152 (359)
++++||+||+|||.+||||++....+|++||+ |++++|+||||||++++ .++++++++++++++.|+|+|+||+|+
T Consensus 39 ~~~~vy~G~~PTg~lHLG~~v~~~~~~~~lQ~~G~~~~~lIaD~ha~~~d~~~~~~e~i~~~~~~~~~~~lA~GlDp~k~ 118 (690)
T 3p0j_A 39 PLIRCYDGFEPSGRMHIAQGIFKAVNVNKCTAAGCEFVFWVADWFALMNDKVGGELEKIRIVGRYLIEVWKAAGMDMDKV 118 (690)
T ss_dssp TTEEEEEEECCCSCCBHHHHHHHHHHHHHHHHTTEEEEEEECCGGGGGGCTTTTHHHHHHHHHHHHHHHHHHTTCCGGGE
T ss_pred CCceEEeeecCCCcchhHhhHHHHHHHHHHHHCCCcEEEEEeeeEEEecCCCcchHHHHHHHHHHHHHHHHHcCCChHHe
Confidence 47899999999999999996543346889998 79999999999999973 588999999999999999999999999
Q ss_pred EEEEccC-cchhhHHHHHH----hccCCHHHHhchhhHHHHHhhhCCCCcccccchhhHHHhhhhhhcccceeecccchH
Q 018259 153 SVFVQSH-VRAHVELMWLL----SSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQK 227 (359)
Q Consensus 153 ~i~~qS~-~~~~~eL~w~L----~~~~~i~~L~r~~~~k~~~~~~~~~~~~~g~l~YPvLQAADIl~~~adivpvG~DQ~ 227 (359)
+||+||+ +++|.+++|.+ ++.+++++|.++.+++.+.. +++++|+|+||+||||||++|++|+||||.||+
T Consensus 119 ~i~~qS~~v~~~~~l~~~~~~~i~~~~tv~~m~~~~~~~~r~~----~~i~~g~f~YPlLQAaDil~~~ad~vpvG~DQ~ 194 (690)
T 3p0j_A 119 LFLWSSEEITSHADTYWRMVLDIGRQNTIARIKKCCTIMGKTE----GTLTAAQVLYPLMQCCDIFFLKADICQLGLDQR 194 (690)
T ss_dssp EEEEHHHHHTTSHHHHHHHHHHHHHTSCHHHHHTTC-----------CCCCCSCSSHHHHHHHHHHHTTCSEECCBGGGH
T ss_pred EEEechHHHHhhHHHHHHHHHHHHhhCCHHHHHhhhhhhhhcc----CCCchhhHhhHHHHHHHHHhhCCCEEeccccHH
Confidence 9999998 67899999986 45899999999999985432 248999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCcCCCCCCCCCCeeecCCCHHHHHHH
Q 018259 228 QHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANK 307 (359)
Q Consensus 228 ~hieLaRdia~k~n~~~g~~~~~~~~~~~~~~~~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~~s~I~L~D~p~~I~kK 307 (359)
||++++||+|+|||+.|+ |..+.. ++||||+||++|||||.+ +|+|+|+|+|++|++|
T Consensus 195 ~~l~l~Rdla~r~n~~~~-----------------p~~l~~---~~l~gL~dG~~KMSKS~~--~~~I~L~D~p~~i~kK 252 (690)
T 3p0j_A 195 KVNMLAREYCDLIGRKLK-----------------PVILSH---HMLAGLKQGQAKMSKSDP--DSAIFMEDTEEDVARK 252 (690)
T ss_dssp HHHHHHHHHHHHTTCCCC-----------------CEEEEB---CCCCCSSTTCSSCBTTBG--GGSCBTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCC-----------------ceEeec---CeeecCCCCCcCCCCCCC--CCeeeccCCHHHHHHH
Confidence 999999999999996542 544444 779999899889999986 4899999999999999
Q ss_pred hhhccCCCCCCcc--c-CCCCC---CCcchHHHHHHHc--------------CCCCHHHHHHHhccC--Cccc
Q 018259 308 IKRCKTDSSAGLE--F-DNLER---PECNNLLSIYQLI--------------SGKTKGEVAEECQNM--NWGS 358 (359)
Q Consensus 308 I~rA~Td~~~~i~--~-~~~~~---p~v~nl~~i~~~~--------------~~~~~~~v~~~~~~~--~~g~ 358 (359)
||+|+||+...+. . ++++. ++.+++++||.+| ++.+++++.++|.++ ++|+
T Consensus 253 I~~A~td~~~~~~~~~~d~g~~~~~~~~~~v~~y~~~~~~~~~~~~~~~~~~~~~~~eel~~~y~~G~l~~~d 325 (690)
T 3p0j_A 253 IRQAYCPRVKQSASAITDDGAPVATDDRNPVLDYFQCVVYARPGAAATIDGTTYATYEDLEQAFVSDEVSEDA 325 (690)
T ss_dssp HHTSCCCSSCCCCCCCCTTCCCCCCSSCCHHHHHHHHTTTTSTTCCEEETTEEESSHHHHHHHHHHTSSCHHH
T ss_pred HHhCcCCCcccccccccCCCCcccCCCCchHHHHHHHhhcccccccccccCCCcchHHHHHHHHHcCCCCHHH
Confidence 9999999875322 1 23222 5889999999986 236899999999765 4554
No 19
>2cyb_A Tyrosyl-tRNA synthetase; rossmann-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: TYR; 1.80A {Archaeoglobus fulgidus}
Probab=100.00 E-value=1.7e-56 Score=436.59 Aligned_cols=243 Identities=25% Similarity=0.354 Sum_probs=213.5
Q ss_pred CCCceEEEeeCCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEeccceecCCC-CHHHHHHHHHHHHHHHHHcCcCCCccE
Q 018259 76 SVKKRIVSGVQPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPY-DTQQLSKATRETAAIYLACGIDNSKAS 153 (359)
Q Consensus 76 ~~~~~i~sGi~PTG~lHLGnyig~i~~~~~lQ~-~~~~~i~IADlhA~t~~~-~~~~l~~~~~~~~~~~lA~GlDp~kt~ 153 (359)
.++++||+||+|||.+||||+ +++.+|++||+ +++++|+|||+||++++. +++++++++++++++|+|+|+||+|++
T Consensus 30 ~~~~~vy~G~~PTg~lHlG~l-~~l~~~~~lq~~g~~~~~~i~D~~a~~~d~~~~~~i~~~~~~~~~~~~a~Gldp~k~~ 108 (323)
T 2cyb_A 30 KEKPRAYVGYEPSGEIHLGHM-MTVQKLMDLQEAGFEIIVLLADIHAYLNEKGTFEEIAEVADYNKKVFIALGLDESRAK 108 (323)
T ss_dssp CSCCEEEEEECCCSCCBHHHH-HHHHHHHHHHHTTCEEEEEECHHHHHHTTCCCHHHHHHHHHHHHHHHHHTTCCTTTCE
T ss_pred CCCCEEEECcCCCCcchHHHH-HHHHHHHHHHHCCCcEEEEECCceeEcCCCCCHHHHHHHHHHHHHHHHHhCCCccceE
Confidence 346799999999999999985 67899999999 899999999999999865 999999999999999999999999999
Q ss_pred EEEccCcc---hhhHHHHHHhccCCHHHHhchhhHHHHHhhhCCCCcccccchhhHHHhhhhhhcccceeecccchHHHH
Q 018259 154 VFVQSHVR---AHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHL 230 (359)
Q Consensus 154 i~~qS~~~---~~~eL~w~L~~~~~i~~L~r~~~~k~~~~~~~~~~~~~g~l~YPvLQAADIl~~~adivpvG~DQ~~hi 230 (359)
||+||+|+ +|.++.|.++|.+++++|+|+.+++. +.. +..++|+|.||+|||||++++++|+||||.||++|+
T Consensus 109 i~~qS~~~~~~~~~~~~~~l~~~~t~~~l~~~~~~~~--~~~--~~~~~g~~~YP~lqaaD~l~~~~~~v~~G~DQ~~~~ 184 (323)
T 2cyb_A 109 FVLGSEYQLSRDYVLDVLKMARITTLNRARRSMDEVS--RRK--EDPMVSQMIYPLMQALDIAHLGVDLAVGGIDQRKIH 184 (323)
T ss_dssp EEEGGGTTTSHHHHHHHHHHHHHSBHHHHHHHTTTTC--SCS--SSCBTHHHHHHHHHHHHHHHTTCSEEEEEGGGHHHH
T ss_pred EEEcchhccchHHHHHHHHHhCccCHHHHhccchhhc--ccc--CCCCchhhhhHHHHHHHHHhcCCCEEEechhhHHHH
Confidence 99999996 78899999999999999999876642 111 345999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCcCCCCCCCCCCeeecCCCHHHHHHHhhh
Q 018259 231 ELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKR 310 (359)
Q Consensus 231 eLaRdia~k~n~~~g~~~~~~~~~~~~~~~~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~~s~I~L~D~p~~I~kKI~r 310 (359)
+++|++|++||+ +.|..++. ++||+| +| +||||| + +|+|+|+|+|++|++||++
T Consensus 185 ~l~rdla~~~~~------------------~~p~~l~~---pll~~l-~G-~KMSKS-~--~n~I~l~d~p~~i~~Ki~~ 238 (323)
T 2cyb_A 185 MLARENLPRLGY------------------SSPVCLHT---PILVGL-DG-QKMSSS-K--GNYISVRDPPEEVERKIRK 238 (323)
T ss_dssp HHHHHHGGGGTC------------------CCCEEEEE---CCCBCT-TS-SBCCTT-T--TCSCBTTCCHHHHHHHHHT
T ss_pred HHHHHHHHhcCC------------------CCceEEec---CcccCC-CC-CcccCC-c--CceeCCCCCHHHHHHHHHh
Confidence 999999999983 34766665 669999 67 799999 4 6899999999999999999
Q ss_pred ccCCCCCCcccCCCCCCCcchHHHHHHHcC--------------------CCCHHHHHHHhccC--Cccc
Q 018259 311 CKTDSSAGLEFDNLERPECNNLLSIYQLIS--------------------GKTKGEVAEECQNM--NWGS 358 (359)
Q Consensus 311 A~Td~~~~i~~~~~~~p~v~nl~~i~~~~~--------------------~~~~~~v~~~~~~~--~~g~ 358 (359)
|+||+.. ++.+++++||++|. ..+++++.++|.++ ++|+
T Consensus 239 a~td~~~---------~~~~~~~~~~~~~~~p~~~~~~i~~~~~~G~~~~~~~~~~l~~~~~~g~~~~~~ 299 (323)
T 2cyb_A 239 AYCPAGV---------VEENPILDIAKYHILPRFGKIVVERDAKFGGDVEYASFEELAEDFKSGQLHPLD 299 (323)
T ss_dssp SCCCTTC---------CTTCHHHHHHHHTHHHHHSCEEECCCGGGTCCEEESSHHHHHHHHHHTSSCHHH
T ss_pred cCCCCCC---------CCcChHHHHHHHHhccccCceeEechhhcCCCCCcccHHHHHHHHhcCCCCHHH
Confidence 9999752 34578999999973 35899999999764 5654
No 20
>3foc_A Tryptophanyl-tRNA synthetase; structural genomics, giardiasi aminoacyl-tRNA synthetase, ligase; 2.09A {Giardia lamblia atcc 50803}
Probab=100.00 E-value=3.7e-57 Score=457.67 Aligned_cols=249 Identities=22% Similarity=0.281 Sum_probs=214.9
Q ss_pred CCceEEEeeCCC-CcchhhhHHHHH-HHHHHHhc--cCcEEEEEeccceecCC--CCHHHHHHHHHHHHHHHHHcCcCCC
Q 018259 77 VKKRIVSGVQPT-GSIHLGNYLGAI-KNWIALQN--SYETLFFIVDLHAITLP--YDTQQLSKATRETAAIYLACGIDNS 150 (359)
Q Consensus 77 ~~~~i~sGi~PT-G~lHLGnyig~i-~~~~~lQ~--~~~~~i~IADlhA~t~~--~~~~~l~~~~~~~~~~~lA~GlDp~ 150 (359)
+++++|+||+|| |.+|||||++++ .+| ||+ ++.++|+|+|+|+++.+ .+++++++++++++++|+|+|+||+
T Consensus 90 ~p~~vytG~dPTagsLHLGH~v~~~~l~~--lQ~~~g~~v~I~IgD~~a~~~r~~lt~E~I~~n~~~~~~~~lA~GlDpe 167 (451)
T 3foc_A 90 HPIYIYTGRGPSSGALHLGHLLPFIFTKY--LQDAFKCYVVIQITDDEKFLRNRSLSYAEVDSYTRENIKDIIACGFDPD 167 (451)
T ss_dssp CCEEEEEEECCCSSCCBHHHHHHHHHHHH--HHHHHTCEEEEEECHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCGG
T ss_pred CCeEEEecCCCCCCCccHHHHHHHHHHHH--HHHccCceEEEEeeCcHHhhcccCCCHHHHHHHHHHHHHHHHHcCCCCC
Confidence 478999999999 789999999987 677 887 46788999999999863 5999999999999999999999999
Q ss_pred ccEEEEccCcch---hhHHHHHHhccCCHHHHhchhhHHHHHhhhCCCCcccccchhhHHHhhhhhhc------------
Q 018259 151 KASVFVQSHVRA---HVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLY------------ 215 (359)
Q Consensus 151 kt~i~~qS~~~~---~~eL~w~L~~~~~i~~L~r~~~~k~~~~~~~~~~~~~g~l~YPvLQAADIl~~------------ 215 (359)
|++||+||+|.+ +.++.|.|++.++++++.+..+|+ +++++|+|+||+||||||+..
T Consensus 168 kt~i~~nSd~~~~~~~~~~l~~L~r~~Tv~~m~~~~~f~--------~~is~gef~YPlLQAaDil~~~~d~~~~~~vp~ 239 (451)
T 3foc_A 168 KTFIFINSQYLSLKNRYRFSCLVDRMLPISQLRASFGFS--------NDANVGYAAFPPKQMLPVYSTYFDGLPFTRVPL 239 (451)
T ss_dssp GEEEEEHHHHTTSTTHHHHHHHHHHTCCHHHHHHHHCCC--------SSSCHHHHTCHHHHHGGGSGGGGTTSGGGCCBC
T ss_pred ceEEEeCchhhcchhHHHHHHHHHhhCCHHHHHhhcccC--------CCCchHHHhhHHHHHHHHHHhhcCCCCcccccc
Confidence 999999999965 567778888889988887776542 568999999999999999843
Q ss_pred ------------------------------ccc-----------------eeecccchHHHHHHHHHHHHHhhhhhCCcc
Q 018259 216 ------------------------------QSD-----------------FVPVGEDQKQHLELTRELAERVNYLYGGRK 248 (359)
Q Consensus 216 ------------------------------~ad-----------------ivpvG~DQ~~hieLaRdia~k~n~~~g~~~ 248 (359)
++| +||||+||+||+|++||||++||
T Consensus 240 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~VPvG~DQ~~hlel~Rdia~rfn------- 312 (451)
T 3foc_A 240 PVGTGNEDAADAVSTKKASKKTPKKDAVLSPVHVVEELFPDSKRYQKAMCLIASGIEQDPYFRLARDLAPRMG------- 312 (451)
T ss_dssp C-------------------------CCCCHHHHHHHHCGGGGGBCCCEEEEEECTTTHHHHHHHHHHTTTTT-------
T ss_pred ccccccchhhhhhhhhhccccccchhhhhhhcccchhhcccccccccccceeeeecchHHHHHHHHHHHHHhC-------
Confidence 334 99999999999999999999998
Q ss_pred ccccCCCCCccccCCceecCCCCcccccCCCCCCcCCCCCCCCCCeeecCCCHHHHHHHhhh-ccCCCCCCccc--CCCC
Q 018259 249 WKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKR-CKTDSSAGLEF--DNLE 325 (359)
Q Consensus 249 ~~~~~~~~~~~~~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~~s~I~L~D~p~~I~kKI~r-A~Td~~~~i~~--~~~~ 325 (359)
++.|..+.. ++||||+++++|||||.+ +|+|+|+|+|++|++|||+ |+||+..++++ ++++
T Consensus 313 -----------~~~p~~~~~---~~l~gLdG~~~KMSKS~~--ns~I~l~D~p~~I~kKI~k~A~Td~~~~~~~~~~~~g 376 (451)
T 3foc_A 313 -----------HPKNAYLLG---KFLPGLQGSGTKMSASDP--NSAIYLTDTPAQIKNKINRYAFSGGRDTEEEHRAFGA 376 (451)
T ss_dssp -----------SCCCEEEEE---CCCCBTTBTTCCCCTTCG--GGSCBTTCCHHHHHHHHHHHSCCCSCSSHHHHHTTCC
T ss_pred -----------CCCCeeecC---CcccCCCCCCCccCCCCC--CCeeeecCCHHHHHHHHhhhccCCCCccchhcccCCC
Confidence 345776654 789999544579999997 4799999999999999999 99999887765 5789
Q ss_pred CCCcchHHHHHHHcC--CCCHHHHHHHhccC--Cccc
Q 018259 326 RPECNNLLSIYQLIS--GKTKGEVAEECQNM--NWGS 358 (359)
Q Consensus 326 ~p~v~nl~~i~~~~~--~~~~~~v~~~~~~~--~~g~ 358 (359)
+|+++|+++||.+|+ +.+++++.++|..+ +||+
T Consensus 377 ~p~~~~v~~~l~~f~~~~~~~eel~~~y~~G~l~~g~ 413 (451)
T 3foc_A 377 DLSVDVSVRYLEVFMKDDAELEKLKADYKTGKLLTGE 413 (451)
T ss_dssp CTTTCHHHHHHHHHCCCHHHHHHHHHHHHHTSSCHHH
T ss_pred CcchhhHHHHHHHHcCCHhHHHHHHHHHHcCCCCHHH
Confidence 999999999999995 45789999999754 4554
No 21
>3hv0_A Tryptophanyl-tRNA synthetase; tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, ligase, nucleotide-binding; HET: TRP; 2.42A {Cryptosporidium parvum iowa II} SCOP: c.26.1.0
Probab=100.00 E-value=1.5e-56 Score=447.61 Aligned_cols=249 Identities=19% Similarity=0.256 Sum_probs=201.1
Q ss_pred CCceEEEeeCCC-CcchhhhHHHHH-HHHHHHhc--cCcEEEEEeccceecC--CCCHHHHHHHHHHHHHHHHHcCcCCC
Q 018259 77 VKKRIVSGVQPT-GSIHLGNYLGAI-KNWIALQN--SYETLFFIVDLHAITL--PYDTQQLSKATRETAAIYLACGIDNS 150 (359)
Q Consensus 77 ~~~~i~sGi~PT-G~lHLGnyig~i-~~~~~lQ~--~~~~~i~IADlhA~t~--~~~~~~l~~~~~~~~~~~lA~GlDp~ 150 (359)
+++++|+|++|| |.+|||||++++ .+| ||+ ++.++|+|||+|+.+. ..+++++++++++++++|+|+|+||+
T Consensus 73 ~~~~vy~G~~PTa~~lHlGh~v~~~~~~~--lQ~~~~~~v~i~I~D~~~~~~r~~~~~e~i~~~~~~~~~~~lA~GlDp~ 150 (393)
T 3hv0_A 73 ELFYLYTGRGPSSESLHVGHLVPFLFTKY--LQDTFKVPLVIQLTDDEKFIFKSNLTLEETHNYAYENMKDIIACGFDPE 150 (393)
T ss_dssp CCCEEEEEECCSSSSCBSTTHHHHHHHHH--HHHHHCCCEEEEECHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTCCCTT
T ss_pred CCeEEEeCCCCCCCCccHHHHHHHHHHHH--HHHhcCCCeEeeccChHHHhhccCCCHHHHHHHHHHHHHHHHHcCCCCc
Confidence 468999999999 689999999988 667 888 4678999999999654 46999999999999999999999999
Q ss_pred ccEEEEccCcchhhHHHHHHhccCCHHHHhchhhHHHHHhhhC-CCCcccccchhhHHHhhhhhh-------c-c---cc
Q 018259 151 KASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAG-GENVGVALLTYPVLMASDILL-------Y-Q---SD 218 (359)
Q Consensus 151 kt~i~~qS~~~~~~eL~w~L~~~~~i~~L~r~~~~k~~~~~~~-~~~~~~g~l~YPvLQAADIl~-------~-~---ad 218 (359)
|++||.||+|.+. +| ..+.+|.|+.+++++.+..+ ++++++|+|+||+||||||+. + + ++
T Consensus 151 kt~i~~ns~~~~~---~~-----~~~~~l~r~~t~~~~~~~~~~~~~~s~g~f~YPlLQaaDil~~~~p~l~~~~~di~~ 222 (393)
T 3hv0_A 151 LTFIFTNLEYIAE---LY-----PDILRIEKKISCSQIKSIFGFKDSCNVGKFAFPAVQAAPAFSSSFPHIFGGRTDIHC 222 (393)
T ss_dssp TEEEEEHHHHHHH---HH-----HHHHHHHHHSBHHHHHHHHCCCTTSBHHHHHHHHHHHGGGSGGGCHHHHTTCSCCCE
T ss_pred ceEEEECCHHHHH---HH-----HHHHHHHccCCHHHHHHhhCCCCCCchhhHhHHHHHHHHHHhhhhHHHhcccCCCce
Confidence 9999999999752 12 23457778888888777665 367999999999999999963 3 3 47
Q ss_pred eeecccchHHHHHHHHHHHHHhhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCcCCCCCCCCCCeeecC
Q 018259 219 FVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLL 298 (359)
Q Consensus 219 ivpvG~DQ~~hieLaRdia~k~n~~~g~~~~~~~~~~~~~~~~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~~s~I~L~ 298 (359)
+||||.||++|++++||+|+|+| ++.|..+.. ++||+|+++++|||||.+ +++|+|+
T Consensus 223 lvp~G~DQ~~~i~l~Rdla~r~~------------------~~~p~~l~~---~~l~gLdG~~~KMSKS~~--nsaI~L~ 279 (393)
T 3hv0_A 223 LVPHAIDQDPYFRMVRDVAPRLG------------------YLKPSSIHS---IFLPSLQGSQTKMSASVQ--NSSIFVN 279 (393)
T ss_dssp EEEEEGGGHHHHHHHHHHTGGGT------------------CCCCEEEEE---CCCCC---------------CCCCBTT
T ss_pred ecccccchHHHHHHHHHHHHHcC------------------CCCceeecc---CcccCCCCCCcCCCCCCC--CCeEecc
Confidence 89999999999999999999998 456877765 779999433479999986 4799999
Q ss_pred CCHHHHHHHhhh-ccCCCCCCcccC--CCCCCCcchHHHHHHHcC--CCCHHHHHHHhccC--Cccc
Q 018259 299 DPKDVIANKIKR-CKTDSSAGLEFD--NLERPECNNLLSIYQLIS--GKTKGEVAEECQNM--NWGS 358 (359)
Q Consensus 299 D~p~~I~kKI~r-A~Td~~~~i~~~--~~~~p~v~nl~~i~~~~~--~~~~~~v~~~~~~~--~~g~ 358 (359)
|+|++|++|||+ |+||++.+++++ .|++|+++|+++||.+|+ +.+++++.++|..+ ++|+
T Consensus 280 D~p~~i~kKI~k~A~td~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~eei~~~y~~G~l~~g~ 346 (393)
T 3hv0_A 280 DNEESIRNKIMKYAFSGGQATEEEQRRLGANLDVDVSWQYLRFLMEDDEKLEEIGKKYSSGEMLSGE 346 (393)
T ss_dssp CCHHHHHHHHHHHSCCCSCSSSCCC---CCCTTTCHHHHHHHHHCCCHHHHHHHHHHHHHTSSCHHH
T ss_pred CCHHHHHHHHHhhccCCCCccccccccCCCCcchhHHHHHHHHHcCChhHHHHHHHHHHcCCCCHHH
Confidence 999999999999 999999888875 489999999999999994 56799999999754 4554
No 22
>3i05_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, LIG nucleotide-binding, protein biosynthesis; 2.80A {Trypanosoma brucei} SCOP: c.26.1.0
Probab=100.00 E-value=8.9e-57 Score=449.49 Aligned_cols=249 Identities=18% Similarity=0.220 Sum_probs=184.4
Q ss_pred CCCceEEEeeCCCC-cchhhhHHHHH-HHHHHHhc--cCcEEEEEeccceecC-CCCHHHHHHHHHHHHHHHHHcCcCCC
Q 018259 76 SVKKRIVSGVQPTG-SIHLGNYLGAI-KNWIALQN--SYETLFFIVDLHAITL-PYDTQQLSKATRETAAIYLACGIDNS 150 (359)
Q Consensus 76 ~~~~~i~sGi~PTG-~lHLGnyig~i-~~~~~lQ~--~~~~~i~IADlhA~t~-~~~~~~l~~~~~~~~~~~lA~GlDp~ 150 (359)
.+++++|+|++||| .+|||||++++ .+| ||+ ++.++|+|||+|+.+. +.+++++++++++++++|+|+|+||+
T Consensus 76 ~~~~~vy~G~~PTg~~lHLGh~v~~~~~~~--lQ~~~~~~v~i~I~D~~~~l~~~~~~e~i~~~~~~~~~~~lA~GlDp~ 153 (395)
T 3i05_A 76 GQPFYLYTGRGPSSESMHMGHLIPFMFTKW--LQDSFRVPLVIQMTDDEKFYFRNIPMEQVEAMTTENIKDIIAMGFDPE 153 (395)
T ss_dssp TCCEEEEEEECCCSSCCBGGGSHHHHHHHH--HHHHHTCCEEEEECHHHHHHHSCCCHHHHHHHHHHHHHHHHTTTCCTT
T ss_pred CCCeEEEEeecCCCccchHHHHHHHHHHHH--HHHhcCCcEEEEEcchHHHhcCCCCHHHHHHHHHHHHHHHHHcCCCCC
Confidence 35789999999999 69999999984 667 887 5678889999977665 67999999999999999999999999
Q ss_pred ccEEEEccCcchhhHHHHHHhccCCHHHHhchhhHHHHHhhhC-CCCcccccchhhHHHhh--------hhhhcc----c
Q 018259 151 KASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAG-GENVGVALLTYPVLMAS--------DILLYQ----S 217 (359)
Q Consensus 151 kt~i~~qS~~~~~~eL~w~L~~~~~i~~L~r~~~~k~~~~~~~-~~~~~~g~l~YPvLQAA--------DIl~~~----a 217 (359)
|+.||.||+|.+ .|+ ..+.+|.|+.+|+++.+..+ .+++++|+|+||+|||| ||++++ +
T Consensus 154 kt~i~~ns~~~~----~~~----~~v~~l~r~~t~~~~~~~~~~~~~~s~g~f~YPlLQaaD~~~~~~~DIll~~~~~~~ 225 (395)
T 3i05_A 154 LTFIFRDFDYMG----CMY----RTVAKIERAFTASQVRGCFGFAMEDNCGRWMFPAIQAAPSFSAAFPHIFPPSMGNVF 225 (395)
T ss_dssp SEEEEEHHHHTT----TSH----HHHHHHHHHSBHHHHHHHHCCCTTSBHHHHHHHHHHHGGGSGGGCTTTSCGGGCCCE
T ss_pred ceEEEEcCHHHH----HHH----HHHHHHHhhCCHHHHHHhhCCCCCCchHHHHHHHHHHHhhhcccchhhhcccccCCc
Confidence 999999999975 122 34668889999998887765 35789999999999999 667788 9
Q ss_pred ceeecccchHHHHHHHHHHHHHhhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCcCCCCCCCCCCeeec
Q 018259 218 DFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINL 297 (359)
Q Consensus 218 divpvG~DQ~~hieLaRdia~k~n~~~g~~~~~~~~~~~~~~~~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~~s~I~L 297 (359)
|+||||.||++|++++||+|+|+|. +.|..+.. ++||+|+++++||||| + +|+|+|
T Consensus 226 ~lvp~G~DQ~~~i~l~Rdla~r~~~------------------~~p~~l~~---~~l~gLdG~~~KMSKS-~--~~~I~L 281 (395)
T 3i05_A 226 CLIPQAIDQDPYFRLTRDIAPRLGY------------------LKPAVIHS---KFFPGLSGPKGKMSSS-S--GTAVLL 281 (395)
T ss_dssp EEEEEEGGGHHHHHHHHHTHHHHTC------------------CCCEEEEE---CCCCCC----------------CCBT
T ss_pred eEEEeccchHHHHHHHHHHHHHcCC------------------CCceeecc---ccccCCCCCcccCCCC-C--CCcccC
Confidence 9999999999999999999999983 35766654 7799994334799999 4 699999
Q ss_pred CCCHHHHHHHhhh-ccCCCCCCccc--CCCCCCCcchHHHHHHHcC--CCCHHHHHHHhccC--Cccc
Q 018259 298 LDPKDVIANKIKR-CKTDSSAGLEF--DNLERPECNNLLSIYQLIS--GKTKGEVAEECQNM--NWGS 358 (359)
Q Consensus 298 ~D~p~~I~kKI~r-A~Td~~~~i~~--~~~~~p~v~nl~~i~~~~~--~~~~~~v~~~~~~~--~~g~ 358 (359)
+|+|++|++|||+ |+||++.++++ +++++|+++|+++||.+|+ +.+++++.++|..+ ++|+
T Consensus 282 ~D~p~~i~kKI~k~A~td~~~~~e~~~~~~g~p~v~~~~~~~~~~~~~~~~~eei~~~y~~G~l~~g~ 349 (395)
T 3i05_A 282 TDTEKMVKDKINKHAFSGGGATKQEHFLLGANVEVDVPIQWLSFFLEDDEELARVKKEYMLGRIMTGE 349 (395)
T ss_dssp TCCHHHHHHHHC----------------------CCHHHHHHHHHCCCSHHHHHHCC-------CHHH
T ss_pred CCCHHHHHHHHHhhccCCCccchhhcccCCCCcchhHHHHHHHHHcCChhhHHHHHHHHhcCCCCHHH
Confidence 9999999999999 99999887665 6789999999999999994 56789999999754 5554
No 23
>2zp1_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, ligase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, nucleotide-binding; HET: IYR; 1.70A {Methanocaldococcus jannaschii} PDB: 1zh6_A* 1j1u_A* 1u7d_A 2q1g_A* 2pxh_A* 1zh0_A* 2q1i_A* 2ag6_A* 3qe4_A* 3d6u_A* 3d6v_A* 1u7x_A 3n2y_A* 2hgz_A*
Probab=100.00 E-value=9.8e-56 Score=430.19 Aligned_cols=236 Identities=24% Similarity=0.283 Sum_probs=205.5
Q ss_pred CCCceEEEeeCCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEeccceecCCC-CHHHHHHHHHHHHHHHHHcCcCCCccE
Q 018259 76 SVKKRIVSGVQPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPY-DTQQLSKATRETAAIYLACGIDNSKAS 153 (359)
Q Consensus 76 ~~~~~i~sGi~PTG~lHLGnyig~i~~~~~lQ~-~~~~~i~IADlhA~t~~~-~~~~l~~~~~~~~~~~lA~GlDp~kt~ 153 (359)
.++++||+||+|||.+|||| ++++++|++||+ |++++|+|||+||++++. +++++++++++++++|+|+|+| +.
T Consensus 26 ~~~~~vy~G~~PTg~lHlGh-l~~l~~~~~lQ~~g~~~~~~i~D~~a~~~~~~~~e~i~~~~~~~~~~~~a~G~d---~~ 101 (314)
T 2zp1_A 26 KDEKSAYIGFEPSGKIHLGH-YLQIKKMIDLQNAGFDIIILLADLAAYLNQKGELDEIRKIGDYNKKVFEAMGLK---AK 101 (314)
T ss_dssp SSSEEEEEEECCCSSCBHHH-HHHHHHHHHHHHTTEEEEEEECHHHHHHTTCCCHHHHHHHHHHHHHHHHHTTCC---CE
T ss_pred CCCCEEEEccCCCCCcchhh-HHHHHHHHHHHHCCCCEEEEEecceEecCCCCCHHHHHHHHHHHHHHHHhcCCC---eE
Confidence 34789999999999999999 788999999998 799999999999999854 8999999999999999999998 78
Q ss_pred EEEccCcchhhHHHHH----HhccCCHHHHhchhhHHHHHhhhCCCCcccccchhhHHHhhhhhhcccceeecccchHHH
Q 018259 154 VFVQSHVRAHVELMWL----LSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQH 229 (359)
Q Consensus 154 i~~qS~~~~~~eL~w~----L~~~~~i~~L~r~~~~k~~~~~~~~~~~~~g~l~YPvLQAADIl~~~adivpvG~DQ~~h 229 (359)
|++||+|+++ +++|. ++|.+++++|+|+.+|+.+. . +..++|+|+||+||||||++|++|+||||.||++|
T Consensus 102 ~~~qs~~~~~-~~~~~~~~~l~~~~t~~~l~~~~~~~~~~--~--~~~~~g~~~YP~LQaaDil~~~~~~v~~G~DQ~~~ 176 (314)
T 2zp1_A 102 YVYGSEFQLD-KDYTLNVYRLALKTTLKRARRSMELIARE--D--ENPKVAEVIYPIMQVNTSHYLGVDVAVGGMEQRKI 176 (314)
T ss_dssp EEEGGGTTTS-HHHHHHHHHHHHHSCHHHHHHHTTTTSCC--C--SSCCTHHHHHHHHHHHHHHHHTCSEEEEEGGGHHH
T ss_pred EEECChhhcc-hHHHHHHHHHHCcCcHHHHhccchhhhhc--c--CCCCchhhhhHHHHHHhHHhhCCCEEEcChhHHHH
Confidence 9999999876 55565 99999999999999987543 2 22499999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCcCCCCCCCCCCeeecCCCHHHHHHHhh
Q 018259 230 LELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIK 309 (359)
Q Consensus 230 ieLaRdia~k~n~~~g~~~~~~~~~~~~~~~~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~~s~I~L~D~p~~I~kKI~ 309 (359)
++|+|++++ . .|..+.. ++||+| +|++||||| + +|+|+|+|+|++|++|||
T Consensus 177 ~~l~R~i~~--~--------------------~~~~~~~---~~l~~l-~G~~KMSKS-~--~~~I~L~d~~~~i~~KI~ 227 (314)
T 2zp1_A 177 HMLARELLP--K--------------------KVVCIHN---PVLTGL-DGEGKMSSS-K--GNFIAVDDSPEEIRAKIK 227 (314)
T ss_dssp HHHHHHHSS--S--------------------CCEEEEE---CCCBCT-TSSSBCCTT-T--TCSCBTTCCHHHHHHHHH
T ss_pred HHHHHHhcC--C--------------------CcEEeec---cccccC-CcccccCCC-C--cceecCCCCHHHHHHHHH
Confidence 999999875 0 2555554 779999 587899999 4 689999999999999999
Q ss_pred hccCCCCCCcccCCCCCCCcchHHHHHHHcC-----------------CCCHHHHHHHhccC--Cccc
Q 018259 310 RCKTDSSAGLEFDNLERPECNNLLSIYQLIS-----------------GKTKGEVAEECQNM--NWGS 358 (359)
Q Consensus 310 rA~Td~~~~i~~~~~~~p~v~nl~~i~~~~~-----------------~~~~~~v~~~~~~~--~~g~ 358 (359)
+|+||++. ++.++++++|++|. ..+++++.++|..+ ++|+
T Consensus 228 ~a~td~~~---------~~~~~~~~~~~~~~~~~~~i~r~~k~g~~~~~~~~eei~~~~~~g~~~~~~ 286 (314)
T 2zp1_A 228 KAYCPAGV---------VEGNPIMEIAKYFLEYPLTIKRPEKFGGDLTVNSYEELESLFKNKELHPMY 286 (314)
T ss_dssp HSCCCTTC---------CTTCHHHHHHHHHCCSSEEECCCGGGTCCEEESSHHHHHHHHHTTCSCHHH
T ss_pred hCCCCCCC---------CCCCcHHHHHHHHhcCCcceeehhhccCCCCcCCHHHHHHHHHcCCCCHHH
Confidence 99999853 34578999999974 35899999999865 5544
No 24
>2yxn_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: AZY; 1.80A {Escherichia coli str} PDB: 1wq3_A* 1wq4_A* 1x8x_A* 1vbn_A* 1vbm_A*
Probab=100.00 E-value=4.4e-56 Score=434.03 Aligned_cols=241 Identities=14% Similarity=0.156 Sum_probs=209.7
Q ss_pred CCceEEEeeCCCCc-chhhhHHHHHHHHHHHhc-cCcEEEEEeccceecC-CC---------CHHHHHHHH---HHHHHH
Q 018259 77 VKKRIVSGVQPTGS-IHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITL-PY---------DTQQLSKAT---RETAAI 141 (359)
Q Consensus 77 ~~~~i~sGi~PTG~-lHLGnyig~i~~~~~lQ~-~~~~~i~IADlhA~t~-~~---------~~~~l~~~~---~~~~~~ 141 (359)
++++||+||+|||. +|||||++ +++|++||+ |++++++|||+||+|+ |. +++++++++ ++.++.
T Consensus 32 ~~~~vy~G~~PTg~slHlGh~l~-l~~~~~lQ~~g~~~~~~i~D~~a~~~dp~g~~~~R~~l~~e~i~~n~~~~~~~~~~ 110 (322)
T 2yxn_A 32 GPIALVCGFDPTADSLHLGHLVP-LLCLKRFQQAGHKPVALVGGATGLIGDPSFKAAERKLNTEETVQEWVDKIRKQVAP 110 (322)
T ss_dssp SCCEEEEEECCSSSSCBHHHHHH-HHHHHHHHHTTCEEEEEECTTGGGTCCCTTCSSCCCCCCHHHHHHHHHHHHHHHGG
T ss_pred CCCEEEEeecCCCCcccHHHHHH-HHHHHHHHHcCCcEEEEEccceeeecCCCCcccccccCCHHHHHHHHHHHHHHHHH
Confidence 36899999999999 99999996 789999998 7999999999999997 43 899999999 788889
Q ss_pred HHHcCcCCCccEEEEccCcchh-hHHHHH--HhccCCHHHHhchhhHHHHHhhhCCCCcccccchhhHHHhhhhhhc---
Q 018259 142 YLACGIDNSKASVFVQSHVRAH-VELMWL--LSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLY--- 215 (359)
Q Consensus 142 ~lA~GlDp~kt~i~~qS~~~~~-~eL~w~--L~~~~~i~~L~r~~~~k~~~~~~~~~~~~~g~l~YPvLQAADIl~~--- 215 (359)
|+|+|+||+|+.||.||+|+.+ .++.|+ +++.++++++.|+.++|++.... .+++++|+|+||+||||||++|
T Consensus 111 ~la~g~dp~k~~i~~qs~w~~~~~~l~~l~~~~~~~~v~~m~~~~~~k~r~~~~-~~~is~g~f~YP~LQaaDil~l~~~ 189 (322)
T 2yxn_A 111 FLDFDCGENSAIAANNYDWFGNMNVLTFLRDIGKHFSVNQMINKEAVKQRLNRE-DQGISFTEFSYNLLQGYDFACLNKQ 189 (322)
T ss_dssp GSCSSSGGGCCEEEETHHHHTTCCHHHHHHHTGGGCCHHHHTTCHHHHHHHHCT-TCCCCHHHHTHHHHHHHHHHHHHHH
T ss_pred HHHcCCCccceEEEecchhhccCcHHHHHHHHhccccHHHHhhhHHHHHHhccC-CCCccchhhhHHHHHHHHHHHHhcc
Confidence 9999999999999999999764 778887 89999999999999999766422 2568999999999999999999
Q ss_pred -ccceeecccchHHHHHHHHHHHHHhhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCcCCCCCCCCCCe
Q 018259 216 -QSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSR 294 (359)
Q Consensus 216 -~adivpvG~DQ~~hieLaRdia~k~n~~~g~~~~~~~~~~~~~~~~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~~s~ 294 (359)
++|+++||.||+||++++||+|+|||+. .|..+.. ++||++ || +|||||.+ |+
T Consensus 190 ~~~~v~~gG~DQ~~~i~l~rdla~r~n~~------------------~~~~l~~---pll~gl-dG-~KMSKS~~---n~ 243 (322)
T 2yxn_A 190 YGVVLCIGGSDQWGNITSGIDLTRRLHQN------------------QVFGLTV---PLITKA-DG-TKFGKTEG---GA 243 (322)
T ss_dssp HCEEEEEECTTCHHHHHHHHHHHHHHHCC------------------CCEEEEC---CCCBCT-TS-CBTTEETT---EE
T ss_pred CCceEEecCchhHHHHHHHHHHHHHhCCC------------------Cceeecc---CccCCC-Cc-ccccCCCC---Ce
Confidence 9999999999999999999999999941 2444544 679999 78 69999985 69
Q ss_pred eecCC---CHHHHHHHhhhccCCCCCCcccCCCCCCCcchHHHHHHHcCCCCHHHHHHHhc-cCCccc
Q 018259 295 INLLD---PKDVIANKIKRCKTDSSAGLEFDNLERPECNNLLSIYQLISGKTKGEVAEECQ-NMNWGS 358 (359)
Q Consensus 295 I~L~D---~p~~I~kKI~rA~Td~~~~i~~~~~~~p~v~nl~~i~~~~~~~~~~~v~~~~~-~~~~g~ 358 (359)
|+|+| +|+++++||+++ + +++|.|++.+|.++++++++++.++|. +.++|+
T Consensus 244 I~L~d~~tsp~~~~~ki~~~-~------------d~~v~~~l~~~~~~~~~~i~~l~~~~~~g~~~~~ 298 (322)
T 2yxn_A 244 VWLDPKKTSPYKFYQFWINT-A------------DADVYRFLKFFTFMSIEEINALEEEDKNSGKAPR 298 (322)
T ss_dssp CBSSTTTSCHHHHHHHHHTC-C------------HHHHHHHHHHHCCCCHHHHHHHHHHHHHHSSCCS
T ss_pred eeccCCCCCHHHHHHHHhCC-C------------cccHHHHHHHHHcCCHHHHHHHHHHHHcCCCHHH
Confidence 99999 999999999996 1 246778888887777788999999996 446664
No 25
>2ip1_A Tryptophanyl-tRNA synthetase; rossmann fold, structural genomics, PSI-2, protein structure initiative; HET: PG4; 1.80A {Saccharomyces cerevisiae} PDB: 3kt0_A* 3kt3_A* 3kt6_A* 3kt8_A*
Probab=100.00 E-value=2.2e-55 Score=443.89 Aligned_cols=248 Identities=17% Similarity=0.243 Sum_probs=205.3
Q ss_pred CCceEEEeeCCC-CcchhhhHHHHH-HHHHHHhc--cCcEEEEEeccceecC-C-CCHHHHHHHHHHHHHHHHHcCcCCC
Q 018259 77 VKKRIVSGVQPT-GSIHLGNYLGAI-KNWIALQN--SYETLFFIVDLHAITL-P-YDTQQLSKATRETAAIYLACGIDNS 150 (359)
Q Consensus 77 ~~~~i~sGi~PT-G~lHLGnyig~i-~~~~~lQ~--~~~~~i~IADlhA~t~-~-~~~~~l~~~~~~~~~~~lA~GlDp~ 150 (359)
+++++|+||+|| |.+|||||++++ .+| ||+ ++.++|+|||+||+++ + .+++.+++++++++++|+|+|+||+
T Consensus 101 ~~~~vy~G~dPTag~LHLGh~v~~~~l~~--lQ~~~g~~~i~lI~D~ta~l~~~~~t~e~i~~~~~~~~~~~lA~GlDp~ 178 (432)
T 2ip1_A 101 KPFFLYTGRGPSSDSMHLGHMIPFVFTKW--LQEVFDVPLVIELTDDEKFLFKHKLTINDVKNFARENAKDIIAVGFDPK 178 (432)
T ss_dssp CCCEEEEEECCCSSCCBGGGHHHHHHHHH--HHHHHTCCEEEEECHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCGG
T ss_pred CCeEEEEeecCCCCCccHHHHHHHHHHHH--HHHHcCCeEEEEEecccceeCCCCCCHHHHHHHHHHHHHHHHHhCCCCC
Confidence 478999999999 899999999976 466 886 7889999999999887 3 4889999999999999999999999
Q ss_pred ccEEEEccCcc--hhhHHHHHHhccCCHHHHhchhhHHHHHhhhC-CCCcccccchhhHHHhhhhhh-----------cc
Q 018259 151 KASVFVQSHVR--AHVELMWLLSSATPIGWLNKMIQFKEKSHKAG-GENVGVALLTYPVLMASDILL-----------YQ 216 (359)
Q Consensus 151 kt~i~~qS~~~--~~~eL~w~L~~~~~i~~L~r~~~~k~~~~~~~-~~~~~~g~l~YPvLQAADIl~-----------~~ 216 (359)
|++||+||+|+ .+.++.|. ++||++++++.++.+ .+++++|+|+||+||||||++ |+
T Consensus 179 k~~i~~nSd~~~~~~~~~~~~---------v~rm~~~~~~k~r~~~~~~~s~g~f~YPlLQAaDil~l~~d~~~~~~~~~ 249 (432)
T 2ip1_A 179 NTFIFSDLQYMGGAFYETVVR---------VSRQITGSTAKAVFGFNDSDCIGKFHFASIQIATAFPSSFPNVLGLPDKT 249 (432)
T ss_dssp GEEEEEHHHHCSHHHHHHHHH---------HHTSCCHHHHHHTTCCCTTSCHHHHHTHHHHHHTTSGGGCTTTTCCCTTC
T ss_pred ceEEEeCchhhhhhHHHHHHH---------HHhhhcHHHHHHHhCCCCCCchhhhhHHHHHHHHHHHhccchhhcccCCC
Confidence 99999999997 67777773 568888888776653 367899999999999999999 57
Q ss_pred cceeecccchHHHHHHHHHHHHHhhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCcCCCCCCCCCCeee
Q 018259 217 SDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRIN 296 (359)
Q Consensus 217 adivpvG~DQ~~hieLaRdia~k~n~~~g~~~~~~~~~~~~~~~~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~~s~I~ 296 (359)
+++||||.||++|++++||+|+||| |+.|..+.. ++||+|+++++|||||.+ +++|+
T Consensus 250 ~~lvp~G~DQ~~~i~l~Rdla~r~~------------------~~~p~~l~~---~ll~gLdG~~~KMSKS~~--nsaI~ 306 (432)
T 2ip1_A 250 PCLIPCAIDQDPYFRVCRDVADKLK------------------YSKPALLHS---RFFPALQGSTTKMSASDD--TTAIF 306 (432)
T ss_dssp CEEEEEEGGGHHHHHHHHHHHHHHT------------------SCCCEEEEE---CCCCCTTC--------CG--GGCCB
T ss_pred ceEEEeccCcHHHHHHHHHHHHHhC------------------CCCceeecc---ccccCCCCCccccCCCCC--CCeEe
Confidence 9999999999999999999999998 346877665 779999544479999986 36999
Q ss_pred cCCCHHHHHHHhhh-ccCCCCCCcccC--CCCCCCcchHHHHHHHcC--CCCHHHHHHHhccC--Cccc
Q 018259 297 LLDPKDVIANKIKR-CKTDSSAGLEFD--NLERPECNNLLSIYQLIS--GKTKGEVAEECQNM--NWGS 358 (359)
Q Consensus 297 L~D~p~~I~kKI~r-A~Td~~~~i~~~--~~~~p~v~nl~~i~~~~~--~~~~~~v~~~~~~~--~~g~ 358 (359)
|+|+|++|++||++ |+||++.+.+++ .+++|+++++++||.+|+ +.+++++.++|..+ ++|+
T Consensus 307 L~d~p~~i~~KI~~yA~t~~~~~~~~~~~~g~~pd~~~v~~~l~~f~~~~~eieel~~~~~~G~~~~~~ 375 (432)
T 2ip1_A 307 MTDTPKQIQKKINKYAFSGGQVSADLHRELGGNPDVDVAYQYLSFFKDDDVFLKECYDKYKSGELLSGE 375 (432)
T ss_dssp TTCCHHHHHHHHHHHSCCCSCSSHHHHHHHCCCTTTCHHHHHHHHHCCCHHHHHHHHHHHHHTSSCHHH
T ss_pred ccCCHHHHHHHhhhhcccCCccchhhccccCCCchHHHHHHHHHHHCCCHhHHHHHHHHHHcCCCCHHH
Confidence 99999999999999 999997654443 358999999999999984 45688899999754 5553
No 26
>1r6u_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytic domain, AN recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.00A {Homo sapiens} SCOP: c.26.1.1 PDB: 1ulh_A 2dr2_A* 2ake_A* 1o5t_A
Probab=100.00 E-value=1.9e-55 Score=444.52 Aligned_cols=249 Identities=19% Similarity=0.273 Sum_probs=212.4
Q ss_pred CCCceEEEeeCCC-CcchhhhHHHHH-HHHHHHhc--cCcEEEEEeccceecCC-CCHHHHHHHHHHHHHHHHHcCcCCC
Q 018259 76 SVKKRIVSGVQPT-GSIHLGNYLGAI-KNWIALQN--SYETLFFIVDLHAITLP-YDTQQLSKATRETAAIYLACGIDNS 150 (359)
Q Consensus 76 ~~~~~i~sGi~PT-G~lHLGnyig~i-~~~~~lQ~--~~~~~i~IADlhA~t~~-~~~~~l~~~~~~~~~~~lA~GlDp~ 150 (359)
.++++||+||+|| |.+|||||++++ .+| ||+ |+.++|+|||+||+++. .+++++++++++++++|+|+|+||+
T Consensus 106 ~~~~~vy~G~dPTag~LHLGh~v~~~~~~~--lQ~~~G~~~iilIgD~ta~igd~lt~e~i~~n~~~~~~~~lA~GlDp~ 183 (437)
T 1r6u_A 106 KKPFYLYTGRGPSSEAMHVGHLIPFIFTKW--LQDVFNVPLVIQMTDDEKYLWKDLTLDQAYGDAVENAKDIIACGFDIN 183 (437)
T ss_dssp TCCEEEEEEECCCSSCCBHHHHHHHHHHHH--HHHHHTCCEEEEECHHHHHHHSSCCHHHHHHHHHHHHHHHHTTTCCGG
T ss_pred CCCcEEEEcccCCCCCccHHHHHHHHHHHH--HHHHhCCcEEEEEecceeeecCCCCHHHHHHHHHHHHHHHHHhCCCcc
Confidence 3478999999999 899999999987 566 886 78999999999999974 6899999999999999999999999
Q ss_pred ccEEEEccCcch----hhHHHHHHhccCCHHHHhchhhHHHHHhhhC-CCCcccccchhhHHHhhhhhh-----------
Q 018259 151 KASVFVQSHVRA----HVELMWLLSSATPIGWLNKMIQFKEKSHKAG-GENVGVALLTYPVLMASDILL----------- 214 (359)
Q Consensus 151 kt~i~~qS~~~~----~~eL~w~L~~~~~i~~L~r~~~~k~~~~~~~-~~~~~~g~l~YPvLQAADIl~----------- 214 (359)
|++||.||+|++ +.++.| +|.||++++++.++.+ .+++++|+|+||+||||||++
T Consensus 184 kt~i~~nSd~~~~l~~~~~l~~---------~v~rm~~~~~~k~r~~~~~~~s~gef~YPlLQAaDil~l~~d~~~g~~~ 254 (437)
T 1r6u_A 184 KTFIFSDLDYMGMSSGFYKNVV---------KIQKHVTFNQVKGIFGFTDSDCIGKISFPAIQAAPSFSNSFPQIFRDRT 254 (437)
T ss_dssp GEEEEEHHHHGGGCTTHHHHHH---------HHHHTCBHHHHHHHHCCCTTSBHHHHHHHHHHHGGGSGGGCHHHHTTCC
T ss_pred ceEEEechhhhhhHHHHHHHHH---------HHHhhccHHHHHHHhCCCCCCchHhHHHHHHHHHHHHHhhcchhccccc
Confidence 999999999985 555544 5668888887776554 367899999999999999999
Q ss_pred cccceeecccchHHHHHHHHHHHHHhhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCcCCCCCCCCCCe
Q 018259 215 YQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSR 294 (359)
Q Consensus 215 ~~adivpvG~DQ~~hieLaRdia~k~n~~~g~~~~~~~~~~~~~~~~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~~s~ 294 (359)
|++|+||||.||++|++++||+|+||| |++|..+.. ++||+|+++++|||||.+ +++
T Consensus 255 ~~~~lVpvG~DQ~~~i~l~Rdla~r~~------------------~~~P~~l~~---pll~gLdG~~~KMSKS~~--nsa 311 (437)
T 1r6u_A 255 DIQCLIPCAIDQDPYFRMTRDVAPRIG------------------YPKPALLHS---TFFPALQGAQTKMSASDP--NSS 311 (437)
T ss_dssp CCEEEEEEEGGGHHHHHHHHHHGGGGT------------------CCCCEEEEE---CCCEETTEEEEECCTTSS--SSC
T ss_pred CCceEEEeehhhHHHHHHHHHHHHHhC------------------CCCceEeec---ccccCCCCCccccCCCCC--CCe
Confidence 788999999999999999999999998 346877665 779999433479999986 469
Q ss_pred eecCCCHHHHHHHhhh-ccCCCCCCcccC--CCCCCCcchHHHHHHHcC--CCCHHHHHHHhcc--CCccc
Q 018259 295 INLLDPKDVIANKIKR-CKTDSSAGLEFD--NLERPECNNLLSIYQLIS--GKTKGEVAEECQN--MNWGS 358 (359)
Q Consensus 295 I~L~D~p~~I~kKI~r-A~Td~~~~i~~~--~~~~p~v~nl~~i~~~~~--~~~~~~v~~~~~~--~~~g~ 358 (359)
|+|+|+|++|++||++ |+||++.+++++ .+++|+++++++||.+|+ +++++++.++|.. .++|+
T Consensus 312 I~L~D~p~~I~kKI~~ya~td~~~~~~~~~~~g~~pd~~~v~~~l~~ft~~~~eieel~~~~~~G~~~~~~ 382 (437)
T 1r6u_A 312 IFLTDTAKQIKTKVNKHAFSGGRDTIEEHRQFGGNCDVDVSFMYLTFFLEDDDKLEQIRKDYTSGAMLTGE 382 (437)
T ss_dssp CBTTCCHHHHHHHHHHTSCCCBCSSHHHHHHHCBCTTTCHHHHHHHHHCCCHHHHHHHHHHHHHTSSCSTT
T ss_pred eeccCCHHHHHHHhhccccCCCccchhhccccCCCccHHHHHHHHHHHcCCHhHHHHHHHHHHcCCCCHHH
Confidence 9999999999999999 999997665543 348899999999999986 3467889999975 36654
No 27
>2dlc_X Tyrosyl-tRNA synthetase, cytoplasmic; tyrrs, ligase-tRNA complex; HET: 2MG OMG M2G PSU 6IA 5MC 5MU 1MA YMP; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.9e-55 Score=438.67 Aligned_cols=253 Identities=21% Similarity=0.154 Sum_probs=199.1
Q ss_pred CCceEEEeeCCCCcchhhhHHHHHHHHHHHhccCcEEEEEeccceecC-CC-CHHHHHHHH----HHHHHHHHHcCcCCC
Q 018259 77 VKKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITL-PY-DTQQLSKAT----RETAAIYLACGIDNS 150 (359)
Q Consensus 77 ~~~~i~sGi~PTG~lHLGnyig~i~~~~~lQ~~~~~~i~IADlhA~t~-~~-~~~~l~~~~----~~~~~~~lA~GlDp~ 150 (359)
++++||+||+|||.+|||||+++++.|..+|.+++++|+|+|+||+|+ +. ..+.++.++ ..+.+.|+|+|+||+
T Consensus 38 ~p~~vy~G~~PTG~LHlG~~~~al~~~~~~q~g~~~ii~I~D~ha~t~~~~~~~e~~~~~~~~~~~~i~~~l~a~Gldp~ 117 (394)
T 2dlc_X 38 RHLKLYWGTAPTGRPHCGYFVPMTKLADFLKAGCEVTVLLADLHAFLDNMKAPLEVVNYRAKYYELTIKAILRSINVPIE 117 (394)
T ss_dssp SCCEEEEEECCCSCCBGGGHHHHHHHHHHHHTTCEEEEEECHHHHHHTTTSSCTTHHHHHHHHHHHHHHHHHHHTTCCCT
T ss_pred CCeEEEEEeCCCCCccHHHHHHHHHHHHHHHcCCcEEEEEcCCccccCCCCCcHHHHHHHHHHHHHHHHHHHHHcCCChh
Confidence 456999999999999999999999999988989999999999999997 44 344455443 345567899999999
Q ss_pred ccEEEEccCc---chhhHHHHHHhccCCHHHHhchhhHHHHHhhhCCCCcccccchhhHHHhhhhhhcccceeecccchH
Q 018259 151 KASVFVQSHV---RAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQK 227 (359)
Q Consensus 151 kt~i~~qS~~---~~~~eL~w~L~~~~~i~~L~r~~~~k~~~~~~~~~~~~~g~l~YPvLQAADIl~~~adivpvG~DQ~ 227 (359)
++.||+||+| .++.++.|.++|.+++++++|+.+.+ .+ . .+++++|+|+||+||||||++|++|+||||.||+
T Consensus 118 k~~i~~qS~~~~~~~~~~~~~~l~~~~t~~~l~r~~~~~--~r-~-~~~~~~g~~~YP~lQaaD~l~~~~~~v~~G~DQ~ 193 (394)
T 2dlc_X 118 KLKFVVGSSYQLTPDYTMDIFRLSNIVSQNDAKRAGADV--VK-Q-VANPLLSGLIYPLMQALDEQFLDVDCQFGGVDQR 193 (394)
T ss_dssp TCEEEETHHHHTSHHHHHHHHHHHTTSCHHHHHHHTTTT--SC-C-CSSCCTHHHHHHHHHHHHHHHTTCSEEEEEGGGH
T ss_pred HcEEEeCchhcchHHHHHHHHHHhCcCcHHHHhcccHhh--hc-c-cCCccceeeechhHhhccHhhhCCCEEecCccHH
Confidence 9999999999 56788999999999999999886422 12 1 2568999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCcCCCCCCCCCCeeecCCCHHHHHHH
Q 018259 228 QHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANK 307 (359)
Q Consensus 228 ~hieLaRdia~k~n~~~g~~~~~~~~~~~~~~~~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~~s~I~L~D~p~~I~kK 307 (359)
+|++++|+++++|| ++.|..++. ++||+| +|.+|||||++ +++|+|+|+|++|++|
T Consensus 194 ~~~~l~rdl~~r~~------------------~~~p~~l~~---pll~gl-~~G~KMSKS~~--ns~I~L~D~p~~i~kK 249 (394)
T 2dlc_X 194 KIFVLAEENLPSLG------------------YKKRAHLMN---PMVPGL-AQGGKMSASDP--NSKIDLLEEPKQVKKK 249 (394)
T ss_dssp HHHHHHHHHGGGGT------------------CCCCEEEEE---CCCCCC-C------------CCSCBTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHcC------------------CCCCEEEec---ccccCC-CCCCcCCCCCC--CCEEeccCCHHHHHHH
Confidence 99999999999998 345877876 679999 53379999986 4679999999999999
Q ss_pred hhhccCCCCCC-----ccc---------CCCCCCCcchHHHH------HHHcCCCCHHHHHHHhccC--Cccc
Q 018259 308 IKRCKTDSSAG-----LEF---------DNLERPECNNLLSI------YQLISGKTKGEVAEECQNM--NWGS 358 (359)
Q Consensus 308 I~rA~Td~~~~-----i~~---------~~~~~p~v~nl~~i------~~~~~~~~~~~v~~~~~~~--~~g~ 358 (359)
||+|+||+.++ ++| +..++|+++| |.+ |..++..+++++.++|.++ ++|+
T Consensus 250 I~ka~Td~~~~~d~~v~~y~k~~~~p~~~~~~~~g~~~-~~i~~~~~~~~~~~~~~i~el~~~~~~g~~~~~~ 321 (394)
T 2dlc_X 250 INSAFCSPGNVEENGLLSFVQYVIAPIQELKFGTNHFE-FFIDRPEKFGGPITYKSFEEMKLAFKEEKLSPPD 321 (394)
T ss_dssp HHHSCCCTTCCSSCHHHHHHHHTHHHHHHTSSSTTCCC-EEECCCGGGSCCEEESSHHHHHHHHHTTSSCHHH
T ss_pred HHHhcCCCCCCCcchHHHHHHhhhcchhhhcccCCCce-EEEeccccccCcCCHHHHHHHHHHHhcCCCCHHH
Confidence 99999999652 111 2334455544 444 4556678999999999764 5554
No 28
>1n3l_A Tyrosyl-tRNA synthetase; rossmann fold AS catalytic domain, unique anticodon recognit domain, dimer, ligase; 1.18A {Homo sapiens} SCOP: c.26.1.1 PDB: 1q11_A*
Probab=100.00 E-value=5.5e-54 Score=426.58 Aligned_cols=244 Identities=23% Similarity=0.201 Sum_probs=194.8
Q ss_pred CCceEEEeeCCCCcchhhhHHHHHHHHHHHhccCcEEEEEeccceecC-CCCHHHHHHHH---HH--HHHHHHHcCcCCC
Q 018259 77 VKKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITL-PYDTQQLSKAT---RE--TAAIYLACGIDNS 150 (359)
Q Consensus 77 ~~~~i~sGi~PTG~lHLGnyig~i~~~~~lQ~~~~~~i~IADlhA~t~-~~~~~~l~~~~---~~--~~~~~lA~GlDp~ 150 (359)
++++||+||+|||.+|||||+++++.|..+|.+++++|+|||+||+|+ +.+++++.++. .+ +.+.|+|+|+||+
T Consensus 34 ~~~~vy~G~~PTG~lHlG~~~~~l~~~~~~q~g~~~i~~I~D~ha~t~~~~~~~~l~~~~~~~~~~~i~~~lla~Gldp~ 113 (372)
T 1n3l_A 34 RELKIYWGTATTGKPHVAYFVPMSKIADFLKAGCEVTILFADLHAYLDNMKAPWELLELRVSYYENVIKAMLESIGVPLE 113 (372)
T ss_dssp SCCEEEEEECCSSCCBGGGHHHHHHHHHHHHTTCEEEEEECHHHHHHTTTTSCHHHHHHHHHHHHHHHHHHHHHHTCCCT
T ss_pred CCCEEEeCcCCCCcccHHHHHHHHHHHHHHHCCCCEEEEEcCCceeeCCCCCHHHHHHHHHHHHHHHHHHHHHHcCCChh
Confidence 467999999999999999999999888877889999999999999997 56666664443 22 3445799999999
Q ss_pred ccEEEEccCcc---hhhHHHHHHhccCCHHHHhchhhHHHHHhhhCCCCcccccchhhHHHhhhhhhcccceeecccchH
Q 018259 151 KASVFVQSHVR---AHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQK 227 (359)
Q Consensus 151 kt~i~~qS~~~---~~~eL~w~L~~~~~i~~L~r~~~~k~~~~~~~~~~~~~g~l~YPvLQAADIl~~~adivpvG~DQ~ 227 (359)
|+.||+||+|+ ++.++.|.++|.+++.+++++.. ..... .+++++|+|+||+||||||++|++|+||||.||+
T Consensus 114 k~~i~~qS~~~~~~~~~~~~~~l~~~~t~~~~~~~~~---~v~~~-~~~~~~g~~~YP~lQaaDil~~~a~~v~~G~DQ~ 189 (372)
T 1n3l_A 114 KLKFIKGTDYQLSKEYTLDVYRLSSVVTQHDSKKAGA---EVVKQ-VEHPLLSGLLYPGLQALDEEYLKVDAQFGGIDQR 189 (372)
T ss_dssp TEEEEEGGGTTTSHHHHHHHHHHHTTSCHHHHHHHTT---TTSCC-CSSCCHHHHHHHHHHHHHHHHTTCSEEEEEGGGH
T ss_pred hcEEEECCeecccHHHHHHHHHHHhhCcHHHHHhchh---hhhcc-cCCCcceeeecchHhhccHHHhcCCEEEcChhHH
Confidence 99999999996 77888899999999999988632 01111 2568999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCcCCCCCCCCCCeeecCCCHHHHHHH
Q 018259 228 QHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANK 307 (359)
Q Consensus 228 ~hieLaRdia~k~n~~~g~~~~~~~~~~~~~~~~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~~s~I~L~D~p~~I~kK 307 (359)
+|++++||++++|+ ++.|..++. ++||+| || +|||||.+ +++|+|+|+|++|++|
T Consensus 190 ~~~~l~rdl~~r~~------------------~~~p~~l~~---pll~gl-dG-~KMSKS~~--ns~I~L~d~p~~i~kK 244 (372)
T 1n3l_A 190 KIFTFAEKYLPALG------------------YSKRVHLMN---PMVPGL-TG-SKMSSSEE--ESKIDLLDRKEDVKKK 244 (372)
T ss_dssp HHHHHHHHHGGGGT------------------CCCCEEEEE---CCCCCS-SC-C---------CCSCBTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHcC------------------CCCCEEEec---CccCCC-Cc-ccccCCCC--CCeEeccCCHHHHHHH
Confidence 99999999999986 345877776 679999 67 69999986 4689999999999999
Q ss_pred hhhccCCCCCCcccCCCCCCCcchHHHHHHH--------c------------CCCCHHHHHHHhccC--Cccc
Q 018259 308 IKRCKTDSSAGLEFDNLERPECNNLLSIYQL--------I------------SGKTKGEVAEECQNM--NWGS 358 (359)
Q Consensus 308 I~rA~Td~~~~i~~~~~~~p~v~nl~~i~~~--------~------------~~~~~~~v~~~~~~~--~~g~ 358 (359)
||+|+||+.+. +.+.++.|+.. | +..+++++.++|.++ ++|+
T Consensus 245 i~~A~td~~~~---------~d~~v~~~lk~~l~~~~~~f~~er~~~~g~~~~~~~i~el~~~~~~g~~~~~~ 308 (372)
T 1n3l_A 245 LKKAFCEPGNV---------ENNGVLSFIKHVLFPLKSEFVILRDEKWGGNKTYTAYVDLEKDFAAEVVHPGD 308 (372)
T ss_dssp HHTCCCCTTCC---------SSCHHHHHHHHTTGGGTTCEEECCCGGGTCCEEESSHHHHHHHHHTTCSCHHH
T ss_pred HHHccCCCCCC---------CcccHHHHHHHhhhhhhcceeecccccccCCCCHHHHHHHHHHHhcCCCCHHH
Confidence 99999998641 11245555553 4 346899999999764 5554
No 29
>1r6t_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytical domain, recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.10A {Homo sapiens} SCOP: a.16.1.3 c.26.1.1 PDB: 2azx_A* 2quh_A* 2qui_A* 2quj_A* 2quk_A
Probab=100.00 E-value=1.6e-54 Score=442.30 Aligned_cols=248 Identities=19% Similarity=0.264 Sum_probs=210.0
Q ss_pred CCceEEEeeCCC-CcchhhhHHHHH-HHHHHHhc--cCcEEEEEeccceecC-CCCHHHHHHHHHHHHHHHHHcCcCCCc
Q 018259 77 VKKRIVSGVQPT-GSIHLGNYLGAI-KNWIALQN--SYETLFFIVDLHAITL-PYDTQQLSKATRETAAIYLACGIDNSK 151 (359)
Q Consensus 77 ~~~~i~sGi~PT-G~lHLGnyig~i-~~~~~lQ~--~~~~~i~IADlhA~t~-~~~~~~l~~~~~~~~~~~lA~GlDp~k 151 (359)
+++++|+||+|| |.+|||||++++ .+| ||+ |+.++|+|||+|++++ ..+++++++++++++++|+|+|+||+|
T Consensus 154 ~~~~vy~G~dPTag~LHLGh~v~~~~~~~--lQ~~~g~~~iilI~D~~a~igd~lt~e~i~~n~~~~~~~~lA~GlDp~k 231 (477)
T 1r6t_A 154 KPFYLYTGRGPSSEAMHVGHLIPFIFTKW--LQDVFNVPLVIQMTDDEKYLWKDLTLDQAYGDAVENAKDIIACGFDINK 231 (477)
T ss_dssp CCEEEEEEECCCTTCCBGGGHHHHHHHHH--HHHHHTCCEEEEECHHHHHHHSSCCHHHHHHHHHHHHHHHHTTCCCTTS
T ss_pred CCcEEEEcccCCCCCccHHHHHHHHHHHH--HHHHhCCcEEEEEecceeeecCCCCHHHHHHHHHHHHHHHHHhCCCCCc
Confidence 478999999999 899999999987 577 886 7899999999999997 368899999999999999999999999
Q ss_pred cEEEEccCcch----hhHHHHHHhccCCHHHHhchhhHHHHHhhhC-CCCcccccchhhHHHhhhhhh-----------c
Q 018259 152 ASVFVQSHVRA----HVELMWLLSSATPIGWLNKMIQFKEKSHKAG-GENVGVALLTYPVLMASDILL-----------Y 215 (359)
Q Consensus 152 t~i~~qS~~~~----~~eL~w~L~~~~~i~~L~r~~~~k~~~~~~~-~~~~~~g~l~YPvLQAADIl~-----------~ 215 (359)
+.||.||+|++ +.++.| +|+|+++++++.++.+ .+++++|+|+||+||||||++ |
T Consensus 232 ~~i~~nsd~~~~l~~~~~~~~---------~l~r~~t~~~~k~r~~~~~~~s~gef~YPlLQAaDil~l~~d~~~g~~~~ 302 (477)
T 1r6t_A 232 TFIFSDLDYMGMSSGFYKNVV---------KIQKHVTFNQVKGIFGFTDSDCIGKISFPAIQAAPSFSNSFPQIFRDRTD 302 (477)
T ss_dssp EEEEEHHHHGGGCTTHHHHHH---------HHHHTCBHHHHHHHHCCCTTSBHHHHHHHHHHHGGGSGGGCHHHHTTCCC
T ss_pred eEEEechhhhcccHHHHHHHH---------HHHhhccHHHHHHHhCCCCCCChhhhhhHHHHHHHHHHhccchhhccccC
Confidence 99999999985 555555 5556666666655443 357899999999999999999 5
Q ss_pred ccceeecccchHHHHHHHHHHHHHhhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCcCCCCCCCCCCee
Q 018259 216 QSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRI 295 (359)
Q Consensus 216 ~adivpvG~DQ~~hieLaRdia~k~n~~~g~~~~~~~~~~~~~~~~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~~s~I 295 (359)
++|+||||.||++|++++||+|+||| |+.|..++. ++||+|+++++|||||.+ +++|
T Consensus 303 ~~~~VpvG~DQ~~~i~l~Rdla~r~~------------------~~~p~~l~~---pll~gLdG~~~KMSKS~~--nsaI 359 (477)
T 1r6t_A 303 IQCLIPCAIDQDPYFRMTRDVAPRIG------------------YPKPALLHS---TFFPALQGAQTKMSASDP--NSSI 359 (477)
T ss_dssp CEEEEEEEGGGHHHHHHHHHHGGGGT------------------CCCCEEEEE---CCCEETTEEEEECCTTST--TCCC
T ss_pred CceeEeccccHHHHHHHHHHHHHHhC------------------CCCceeeec---ccccCCCCCccccCCCCC--CCce
Confidence 78999999999999999999999998 346877665 779999433479999986 3699
Q ss_pred ecCCCHHHHHHHhhh-ccCCCCCCcccC--CCCCCCcchHHHHHHHcC--CCCHHHHHHHhccC--Cccc
Q 018259 296 NLLDPKDVIANKIKR-CKTDSSAGLEFD--NLERPECNNLLSIYQLIS--GKTKGEVAEECQNM--NWGS 358 (359)
Q Consensus 296 ~L~D~p~~I~kKI~r-A~Td~~~~i~~~--~~~~p~v~nl~~i~~~~~--~~~~~~v~~~~~~~--~~g~ 358 (359)
+|+|+|++|++||++ |+||++.+.+++ .+++|+++++++||.+|+ +.+++++.++|..+ ++|+
T Consensus 360 ~L~d~p~~i~kKi~~yA~t~~~~~~~~~~~~g~~pd~~~v~~~l~~ft~~~~eieel~~~~~~G~~~~~~ 429 (477)
T 1r6t_A 360 FLTDTAKQIKTKVNKHAFSGGRDTIEEHRQFGGNCDVDVSFMYLTFFLEDDDKLEQIRKDYTSGAMLTGE 429 (477)
T ss_dssp BTTCCHHHHHHHHHHHSCCCSCSSHHHHHHHCCCTTTCHHHHHHHHHCCCHHHHHHHHHHHHHTSSCHHH
T ss_pred eecCCHHHHHHHhccccccCCccchhhccccCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCHHH
Confidence 999999999999999 999997655443 358999999999999986 34678899999754 5554
No 30
>2pid_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, protein-substrate complex, ATP-BI ligase, mitochondrion, nucleotide-binding, protein biosynth; HET: YSA; 2.20A {Homo sapiens} PDB: 3zxi_A*
Probab=100.00 E-value=1.2e-53 Score=422.14 Aligned_cols=239 Identities=18% Similarity=0.165 Sum_probs=193.5
Q ss_pred CCceEEEeeCCCCc-chhhhHHHHHHHHHHHhc-cCcEEEEEeccceecC-CC---------CHHHHHHHHHHHHHHHHH
Q 018259 77 VKKRIVSGVQPTGS-IHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITL-PY---------DTQQLSKATRETAAIYLA 144 (359)
Q Consensus 77 ~~~~i~sGi~PTG~-lHLGnyig~i~~~~~lQ~-~~~~~i~IADlhA~t~-~~---------~~~~l~~~~~~~~~~~lA 144 (359)
++++||+||+|||+ +||||++ .+++|++||+ |++++|+|||+||+|+ |. +++++++++++++++|+|
T Consensus 45 ~~~~vy~G~~PTg~sLHLGhl~-~l~~~~~lQ~~G~~~~~lIaD~hal~~dp~g~~~~R~~l~~e~i~~n~~~~~~~~~a 123 (356)
T 2pid_A 45 FPQTIYCGFDPTADSLHVGHLL-ALLGLFHLQRAGHNVIALVGGATARLGDPSGRTKEREALETERVRANARALRLGLEA 123 (356)
T ss_dssp -CCEEEEEECCSSSSCBHHHHH-HHHHHHHHHHTTCEEEEEECTTGGGTCCCTTCSSCCCCCCHHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeecCCCCcccHHHHH-HHHHHHHHHHCCCcEEEEEccceeeecCCcccccccccCCHHHHHHHHHHHHHHHHH
Confidence 45899999999997 9999965 5789999998 7999999999999997 32 689999999999999999
Q ss_pred cCcCCCc-----------cEEEEccCcchhhHHHHHH---hccCCHHHHhchhhHHHHHhhhCCCCcccccchhhHHHhh
Q 018259 145 CGIDNSK-----------ASVFVQSHVRAHVELMWLL---SSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMAS 210 (359)
Q Consensus 145 ~GlDp~k-----------t~i~~qS~~~~~~eL~w~L---~~~~~i~~L~r~~~~k~~~~~~~~~~~~~g~l~YPvLQAA 210 (359)
+ +||++ ++||+||+|..+.++.|++ +..+++++|.+..+||++... .+++++|+|+||+||||
T Consensus 124 ~-lDp~~~~~qs~~~~~~~~i~~ns~w~~~~~~~~~l~~~~~~~~v~~m~~~~~~k~r~~~--~~~is~g~f~YPvLQAa 200 (356)
T 2pid_A 124 L-AANHQQLFTDGRSWGSFTVLDNSAWYQKQHLVDFLAAVGGHFRMGTLLSRQSVQLRLKS--PEGMSLAEFFYQVLQAY 200 (356)
T ss_dssp H-HHHHHHHSCCSSCCCCEEEEETHHHHTTCBHHHHHHHHGGGSBHHHHHHCHHHHHHHTS--TTCCBHHHHHHHHHHHH
T ss_pred h-cChhhccccccCCCcceEEEechHhhhhccHHHHHHHHhcceeHHHHhcchHHHHhhcc--CCCCchHHHHHHHHHHH
Confidence 9 98855 8999999998877777765 458999999999999876542 25789999999999999
Q ss_pred hhhhc----ccceeecccchHHHHHHHHHHHHHhhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCcCCC
Q 018259 211 DILLY----QSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSK 286 (359)
Q Consensus 211 DIl~~----~adivpvG~DQ~~hieLaRdia~k~n~~~g~~~~~~~~~~~~~~~~~P~~l~~~~~~~l~sL~dg~~KMSK 286 (359)
||++| ++|+||||.||+||++++||||+|||.. .|..+.. ++||++ || +||||
T Consensus 201 Dil~l~~~~~~~i~p~G~DQ~~~i~l~rdla~r~n~~------------------~~~~l~~---pll~~l-dG-~KMSK 257 (356)
T 2pid_A 201 DFYYLFQRYGCRVQLGGSDQLGNIMSGYEFINKLTGE------------------DVFGITV---PLITST-TG-AKLGK 257 (356)
T ss_dssp HHHHHHHHHCCCEEEEEGGGHHHHHHHHHHHHHHSSC------------------CCEEEEE---CCCC-----------
T ss_pred HHHHHhccCCCcEEeccHHHHHHHHHHHHHHHHhCCC------------------Ccccccc---ccccCC-Cc-ccccC
Confidence 99999 9999999999999999999999999941 2333433 668998 78 69999
Q ss_pred CCCCCCCeeecCC---CHHHHHHHhhhccCCCCCCcccCCCCCCCcchHHHHHHHcCCCCHHHHHHHhcc-CCccc
Q 018259 287 SAPSDQSRINLLD---PKDVIANKIKRCKTDSSAGLEFDNLERPECNNLLSIYQLISGKTKGEVAEECQN-MNWGS 358 (359)
Q Consensus 287 S~p~~~s~I~L~D---~p~~I~kKI~rA~Td~~~~i~~~~~~~p~v~nl~~i~~~~~~~~~~~v~~~~~~-~~~g~ 358 (359)
|. +|+|+|+| +|++|++||+++ +| ++|.|++.||.++++++++++.++|.. .++|+
T Consensus 258 S~---~naI~L~d~~tsp~~i~~ki~~~-~D------------~~v~~~l~~~t~~~~~~i~~l~~~~~~g~~~~~ 317 (356)
T 2pid_A 258 SA---GNAVWLNRDKTSPFELYQFFVRQ-PD------------DSVERYLKLFTFLPLPEIDHIMQLHVKEPERRG 317 (356)
T ss_dssp -------CCBSSTTTSCHHHHHHHHHTC-CH------------HHHHHHHHHHCCCCHHHHHHHHHHHHHCGGGCH
T ss_pred CC---CCeeeccCCCCCHHHHHHHHHcC-Cc------------hhHHHHHHHHHcCCchHHHHHHHHHhcCCCHHH
Confidence 95 58999999 999999999995 22 557888888888888889999999974 45554
No 31
>2jan_A Tyrosyl-tRNA synthetase; protein biosynthesis, aminoacyl-tRNA synthetase, tyrrs, ligase, tyrosine, RNA-binding, ATP-binding; 2.9A {Mycobacterium tuberculosis}
Probab=100.00 E-value=2.4e-53 Score=428.72 Aligned_cols=240 Identities=14% Similarity=0.151 Sum_probs=207.3
Q ss_pred CCceEEEeeCCCCc-chhhhHHHHHHHHHHHhc-cCcEEEEEeccceecC-C--------CCHHHHHHHHHHH---HHHH
Q 018259 77 VKKRIVSGVQPTGS-IHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITL-P--------YDTQQLSKATRET---AAIY 142 (359)
Q Consensus 77 ~~~~i~sGi~PTG~-lHLGnyig~i~~~~~lQ~-~~~~~i~IADlhA~t~-~--------~~~~~l~~~~~~~---~~~~ 142 (359)
+++++|+||+|||+ +||||++ .+++|++||+ |++++++|||+||+++ | .++++++++++++ ++.|
T Consensus 31 ~~~~iy~G~dPTg~sLHLGhlv-~l~~l~~lQ~~G~~~i~lIgD~ta~igdpsk~~~R~~~~~e~i~~n~~~~~~~~~~~ 109 (432)
T 2jan_A 31 GPMTVYAGFDPTAPSLHAGHLV-PLLTLRRFQRAGHRPIVLAGGATGMIGDPRDVGERSLNEADTVAEWTERIRGQLERF 109 (432)
T ss_dssp SCCEEEEEECCSSSSCBGGGHH-HHHHHHHHHHTTCEEEEEECHHHHHHHCCCCTTTSGGGHHHHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeeCCCCCCcCHHHHH-HHHHHHHHHHCCCcEEEEEcCcEEEccCCcccccccCCCHHHHHHHHHHHHHHHHHH
Confidence 46799999999996 9999965 5789999998 7999999999999997 5 6789999999766 6778
Q ss_pred HHcCcCCCccEEEEccCcchh-hHHHHH--HhccCCHHHHhchhhHHHHHhhhCCCCcccccchhhHHHhhhhhhc----
Q 018259 143 LACGIDNSKASVFVQSHVRAH-VELMWL--LSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLY---- 215 (359)
Q Consensus 143 lA~GlDp~kt~i~~qS~~~~~-~eL~w~--L~~~~~i~~L~r~~~~k~~~~~~~~~~~~~g~l~YPvLQAADIl~~---- 215 (359)
+|+|+||+|++||+||+|.++ .++.|+ +++.+++++|.|+.+||++. . .+++++|+|+||+||||||++|
T Consensus 110 La~G~dp~k~~i~~nsdw~~~~~~l~~lr~l~~~~tv~~m~~~~~~k~r~--~-~~~is~~ef~YPlLQaaDil~l~~~~ 186 (432)
T 2jan_A 110 VDFDDSPMGAIVENNLEWTGSLSAIEFLRDIGKHFSVNVMLARDTIRRRL--A-GEGISYTEFSYLLLQANDYVELHRRH 186 (432)
T ss_dssp SCCSSSTTCCEEEETHHHHSSCBHHHHHHHTGGGCBHHHHHHSHHHHHHT--S-TTCCBHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhcCCCCCceEEEECchhcccCcHHHHHHHHhccCcHHHHhcchHHhhhh--c-CCCcchHHHHHHHHHHHHHHHHhccC
Confidence 999999999999999999874 588888 89999999999999999876 2 2678999999999999999999
Q ss_pred ccceeecccchHHHHHHHHHHHHHhhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCcCCCCCCCCCCee
Q 018259 216 QSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRI 295 (359)
Q Consensus 216 ~adivpvG~DQ~~hieLaRdia~k~n~~~g~~~~~~~~~~~~~~~~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~~s~I 295 (359)
++|+||||.||++|++++||+|+|||.. .|..+.. ++||++ || +|||||.+ +++|
T Consensus 187 ~~~i~~gG~DQ~~ni~lgrdlarr~~~~------------------~~~~l~~---plL~~l-dG-~KMSKS~~--nsaI 241 (432)
T 2jan_A 187 GCTLQIGGADQWGNIIAGVRLVRQKLGA------------------TVHALTV---PLVTAA-DG-TKFGKSTG--GGSL 241 (432)
T ss_dssp CCCEEEECSTTHHHHHHHHHHHHHHHCC------------------CCEEEEC---CCCBCT-TS-CBTTBCSS--SCBC
T ss_pred CCcEEeccHHHHHHHHHHHHHHHHhCCC------------------Ccccccc---ccccCC-Cc-CcCCCCCC--CCeE
Confidence 9999999999999999999999999942 2434443 679999 78 69999985 3599
Q ss_pred ecCC---CHHHHHHHhhhccCCCCCCcccCCCCCCCcchHHHHHHHcCCCCHHHHHHHhc-cCCccc
Q 018259 296 NLLD---PKDVIANKIKRCKTDSSAGLEFDNLERPECNNLLSIYQLISGKTKGEVAEECQ-NMNWGS 358 (359)
Q Consensus 296 ~L~D---~p~~I~kKI~rA~Td~~~~i~~~~~~~p~v~nl~~i~~~~~~~~~~~v~~~~~-~~~~g~ 358 (359)
+|+| +|++|++||+++ +| +.|.|++.+|.++++++++++.++|. +.++|+
T Consensus 242 ~L~d~~tsp~~i~qki~~~-~D------------~~v~~~l~l~t~~~~~ei~~l~~~~~~g~~~~~ 295 (432)
T 2jan_A 242 WLDPQMTSPYAWYQYFVNT-AD------------ADVIRYLRWFTFLSADELAELEQATAQRPQQRA 295 (432)
T ss_dssp BSSTTTSCHHHHHHHHHTC-CH------------HHHHHHHHHHSCCCHHHHHHHHHHHHHCGGGCH
T ss_pred EccCCCCCHHHHHHHHhcC-Cc------------hhHHHHHHHHHcCChHHHHHHHHHHhhccCHHH
Confidence 9999 999999999995 22 45778888888777788999999996 335554
No 32
>1h3f_A Tyrosyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase; HET: TYE; 2.00A {Thermus thermophilus} SCOP: c.26.1.1 d.66.1.4 PDB: 1h3e_A*
Probab=100.00 E-value=1.4e-51 Score=416.12 Aligned_cols=236 Identities=19% Similarity=0.222 Sum_probs=193.0
Q ss_pred CCCceEEEeeCCCCc-chhhhHHHHHHHHHHHhc-cCcEEEEEeccceecC-C---------CCHHHHHHHHHHHHHHHH
Q 018259 76 SVKKRIVSGVQPTGS-IHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITL-P---------YDTQQLSKATRETAAIYL 143 (359)
Q Consensus 76 ~~~~~i~sGi~PTG~-lHLGnyig~i~~~~~lQ~-~~~~~i~IADlhA~t~-~---------~~~~~l~~~~~~~~~~~l 143 (359)
.++++||+||+|||. +|||||++ +++|++||+ ||+++++|||+||+++ | .+++.+++++.++.+.+.
T Consensus 35 ~~~~~vy~G~dPTg~sLHlGh~v~-l~~l~~lQ~~G~~~i~lIgD~ta~igdpsgk~~~R~~l~~e~i~~n~~~~~~ql~ 113 (432)
T 1h3f_A 35 GRPLTVKLGADPTRPDLHLGHAVV-LRKMRQFQELGHKVVLIIGDFTGMIGDPSGRSKTRPPLTLEETRENAKTYVAQAG 113 (432)
T ss_dssp CSCCEEEEEECTTCCSCBHHHHHH-HHHHHHHHHTTCEEEEEECCCC---------------------HHHHHHHHHHHT
T ss_pred CCCcEEEEcccCCCCCCchhhHHH-HHHHHHHHHCCCCEEEEEccceEEecCCCCcccccccCCHHHHHHHHHHHHHHHH
Confidence 357899999999996 99999995 789999999 7999999999999997 3 135677777766655544
Q ss_pred HcCcC--CCccEEEEccCcchhhHHHHHH--hccCCHHHHhchhhHHHHHhhhCCCCcccccchhhHHHhhhhhhcccce
Q 018259 144 ACGID--NSKASVFVQSHVRAHVELMWLL--SSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDF 219 (359)
Q Consensus 144 A~GlD--p~kt~i~~qS~~~~~~eL~w~L--~~~~~i~~L~r~~~~k~~~~~~~~~~~~~g~l~YPvLQAADIl~~~adi 219 (359)
+|+| |+|++||+||+|.++..+.|++ ++.++++++.+..+||.+... .+++++|+|+||+||||||++|++|+
T Consensus 114 -~~ld~~p~k~~i~~nSd~~~~~~~~~~l~l~~~~tv~~ml~~~~~k~r~~~--~~~is~~ef~YPlLQaaDil~l~~~l 190 (432)
T 1h3f_A 114 -KILRQEPHLFELRYNSEWLEGLTFKEVVRLTSLMTVAQMLEREDFKKRYEA--GIPISLHELLYPFAQAYDSVAIRADV 190 (432)
T ss_dssp -TTSCCCTTTEEEEETHHHHTTCBHHHHHHHHTTSBHHHHTTSHHHHHHHHT--TCCCBGGGGTHHHHHHHHHHHHTCSE
T ss_pred -HHhcCCCCceEEEECCcccccCcHHHHHHHhCcCcHHHHHhhhhHHHHhhc--CCCCCccccchhhHHhhhhhhcCccE
Confidence 8999 9999999999998887777776 899999998888899977643 25789999999999999999999999
Q ss_pred eecccchHHHHHHHHHHHHHhhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCcCCCCCCCCCCeeecCC
Q 018259 220 VPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLD 299 (359)
Q Consensus 220 vpvG~DQ~~hieLaRdia~k~n~~~g~~~~~~~~~~~~~~~~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~~s~I~L~D 299 (359)
||||.||++|++++||+++|+|.. .|..+.. ++||++ ||++|||||.+ |+|+|+|
T Consensus 191 ~~gG~DQ~~ni~l~rdlarr~~~~------------------~~~~lt~---pll~gl-dG~~KMSKS~~---n~I~L~d 245 (432)
T 1h3f_A 191 EMGGTDQRFNLLVGREVQRAYGQS------------------PQVCFLM---PLLVGL-DGREKMSKSLD---NYIGLTE 245 (432)
T ss_dssp EEEEGGGHHHHHHHHHHHHHTTCC------------------CCEEEEE---CCCBCT-TSSSBCCGGGT---CCCBTTS
T ss_pred EEechHHHHHHHHHHHHHHHhCCC------------------CceEeec---ccccCC-CCccccCcCCC---CeeCCCC
Confidence 999999999999999999999832 2334433 679998 88779999984 6999999
Q ss_pred CHHHHHHHhhhccCCCCCCcccCCCCCCCcchHHHHHHHcCCCCHHHHHHHhccCCcc
Q 018259 300 PKDVIANKIKRCKTDSSAGLEFDNLERPECNNLLSIYQLISGKTKGEVAEECQNMNWG 357 (359)
Q Consensus 300 ~p~~I~kKI~rA~Td~~~~i~~~~~~~p~v~nl~~i~~~~~~~~~~~v~~~~~~~~~g 357 (359)
+|++|++||+++.++ +++.||++|++.+.+|+.+.+.+ +++
T Consensus 246 sp~~i~~Ki~~~~d~----------------~v~~~l~~ft~~~~eei~~~~~~-~~~ 286 (432)
T 1h3f_A 246 PPEAMFKKLMRVPDP----------------LLPSYFRLLTDLEEEEIEALLKA-GPV 286 (432)
T ss_dssp CHHHHHHHHHTSCGG----------------GHHHHHHHHCCCCHHHHHHHHHH-CHH
T ss_pred CHHHHHHHHhCCCcc----------------HHHHHHHHcCCCCHHHHHHHHhh-ChH
Confidence 999999999998432 68999999999999988887754 443
No 33
>1jil_A Tyrrs, tyrosyl-tRNA synthetase; truncation, based inhibitor design, ligase; HET: 485; 2.20A {Staphylococcus aureus} SCOP: c.26.1.1 PDB: 1jij_A* 1jii_A* 1jik_A*
Probab=100.00 E-value=3.7e-51 Score=411.95 Aligned_cols=237 Identities=14% Similarity=0.137 Sum_probs=206.5
Q ss_pred CCceEEEeeCCCCc-chhhhHHHHHHHHHHHhc-cCcEEEEEeccceecC-CC---------CHHHHHHHHHHHHHHHHH
Q 018259 77 VKKRIVSGVQPTGS-IHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITL-PY---------DTQQLSKATRETAAIYLA 144 (359)
Q Consensus 77 ~~~~i~sGi~PTG~-lHLGnyig~i~~~~~lQ~-~~~~~i~IADlhA~t~-~~---------~~~~l~~~~~~~~~~~lA 144 (359)
+++++|+||+|||. +|||||++ +.+|++||+ ||+++++|||+||+++ |. ++++++++++++.+.+++
T Consensus 31 ~~~~iy~G~dPTg~sLHlGh~v~-l~~~~~lQ~~G~~~~~lIgd~ta~igdp~gk~~~R~~l~~e~i~~n~~~~~~~~~~ 109 (420)
T 1jil_A 31 EQVTLYCGADPTADSLHIGHLLP-FLTLRRFQEHGHRPIVLIGGGTGMIGDPSGKSEERVLQTEEQVDKNIEGISKQMHN 109 (420)
T ss_dssp SCCEEEEEECCSSSSCBHHHHHH-HHHHHHHHHTTCEEEEEECTTGGGTCCCTTCSSCCCCCCHHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeeCCCCCCccHHHHHH-HHHHHHHHHCCCcEEEEEcCceeEecCCCccccccccCCHHHHHHHHHHHHHHHHH
Confidence 36799999999999 99999996 789999998 7999999999999997 43 899999999999999999
Q ss_pred cCcCC---CccEEEEccCcc-hhhHHHHHH--hccCCHHHHhchhhHHHHHhhhCCCCcccccchhhHHHhhhhhhc---
Q 018259 145 CGIDN---SKASVFVQSHVR-AHVELMWLL--SSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLY--- 215 (359)
Q Consensus 145 ~GlDp---~kt~i~~qS~~~-~~~eL~w~L--~~~~~i~~L~r~~~~k~~~~~~~~~~~~~g~l~YPvLQAADIl~~--- 215 (359)
+ ||| +|+.||.||+|. ++.++.|+. ++.++++++.++.+||.+. + +++++|+|+||+||||||++|
T Consensus 110 ~-ld~~~~~k~~i~~ns~w~~~~~~l~~l~~~~~~~tv~~m~~~~~~k~r~---~-~~is~~ef~YplLQaaD~l~l~~~ 184 (420)
T 1jil_A 110 I-FEFGTDHGAVLVNNRDWLGQISLISFLRDYGKHVGVNYMLGKDSIQSRL---E-HGISYTEFTYTILQAIDFGHLNRE 184 (420)
T ss_dssp H-SCCSSSSSCEEEETHHHHTTCCHHHHHHHTGGGCCHHHHHTCGGGHHHH---T-TTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred H-hCCCCCCceEEEEchhhhhhccHHHHHHHHhccccHHHHhcchhhhhhc---c-CCcchHHHHHHHHHHHHHHHHhcc
Confidence 9 998 999999999997 668999985 8999999999999998765 2 578999999999999999999
Q ss_pred -ccceeecccchHHHHHHHHHHHHHh-hhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCcCCCCCCCCCC
Q 018259 216 -QSDFVPVGEDQKQHLELTRELAERV-NYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQS 293 (359)
Q Consensus 216 -~adivpvG~DQ~~hieLaRdia~k~-n~~~g~~~~~~~~~~~~~~~~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~~s 293 (359)
++|+||||.||++|++++||+|+|+ |.. .|..+.. ++||++ || +|||||. +|
T Consensus 185 ~~~~i~~gG~DQ~~ni~~grdla~r~~~~~------------------~~~~l~~---pll~~l-dG-~KMSKS~---~n 238 (420)
T 1jil_A 185 LNCKIQVGGSDQWGNITSGIELMRRMYGQT------------------DAYGLTI---PLVTKS-DG-KKFGKSE---SG 238 (420)
T ss_dssp HCEEEEEEEGGGHHHHHHHHHHHHHHHCCC------------------CCEEEEE---CCCBCT-TS-CBTTBCS---SS
T ss_pred CCCcEEeccHHHHHHHHHHHHHHHHhcCCC------------------CeeEeec---ccccCC-cc-ccccCCC---CC
Confidence 9999999999999999999999999 731 2434443 669998 78 6999997 47
Q ss_pred eeecCC---CHHHHHHHhhhccCCCCCCcccCCCCCCCcchHHHHHHHcCCCCHHHHHHHhcc-CCccc
Q 018259 294 RINLLD---PKDVIANKIKRCKTDSSAGLEFDNLERPECNNLLSIYQLISGKTKGEVAEECQN-MNWGS 358 (359)
Q Consensus 294 ~I~L~D---~p~~I~kKI~rA~Td~~~~i~~~~~~~p~v~nl~~i~~~~~~~~~~~v~~~~~~-~~~g~ 358 (359)
+|+|+| +|++|++||+++ + ++.|.|++.||.++++++++++.++|.. .++++
T Consensus 239 aI~L~d~~tsp~~i~~ki~~~-~------------D~~v~~~l~~~t~~~~~ei~~l~~~~~~g~~~~~ 294 (420)
T 1jil_A 239 AVWLDAEKTSPYEFYQFWINQ-S------------DEDVIKFLKYFTFLGKEEIDRLEQSKNEAPHLRE 294 (420)
T ss_dssp BCBSSTTTSCHHHHHHHHHTC-C------------HHHHHHHHHHHCCCCHHHHHHHHHHHHHCGGGCH
T ss_pred eEecCCCCCCHHHHHHHHhcC-C------------chhHHHHHHHHHcCCHHHHHHHHHHHhcCCChHH
Confidence 999999 999999999995 2 2557788888877777889999999963 34543
No 34
>2ts1_A Tyrosyl-tRNA synthetase; ligase (synthetase); 2.30A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 3ts1_A* 1tyd_E* 1tya_E* 1tyc_A 1tyb_E* 4ts1_A* 1jh3_A
Probab=100.00 E-value=1.5e-51 Score=414.40 Aligned_cols=238 Identities=14% Similarity=0.167 Sum_probs=199.0
Q ss_pred CCceEEEeeCCCCc-chhhhHHHHHHHHHHHhc-cCcEEEEEeccceecC-CC---------CHHHHHHHHHHH---HHH
Q 018259 77 VKKRIVSGVQPTGS-IHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITL-PY---------DTQQLSKATRET---AAI 141 (359)
Q Consensus 77 ~~~~i~sGi~PTG~-lHLGnyig~i~~~~~lQ~-~~~~~i~IADlhA~t~-~~---------~~~~l~~~~~~~---~~~ 141 (359)
+++++|+||+|||. +|||||++ +++|++||+ ||+++++|||+||+++ |. ++++++++++.+ ++.
T Consensus 29 ~~~~iy~G~dPTg~sLHlGh~v~-l~~l~~lQ~~G~~~i~lIgd~ta~igdpsgk~~~R~~l~~e~i~~n~~~~~~q~~~ 107 (419)
T 2ts1_A 29 ERVTLYCGFDPTADSLHIGHLAT-ILTMRRFQQAGHRPIALVGGATGLIGDPSGKKSERTLNAKETVEAWSARIKEQLGR 107 (419)
T ss_dssp SCCEEEEEECCSSSSCBGGGHHH-HHHHHHHHHTTCEEEEEECTTGGGTCCCTTCSSCCCCCCHHHHHHHHHHHHHHHTT
T ss_pred CCCEEEEeeCCCCCCccHHHHHH-HHHHHHHHHCCCcEEEEEcCceeEecCCCCccccccCCCHHHHHHHHHHHHHHHHH
Confidence 46899999999999 99999996 789999998 7999999999999997 43 899999999766 556
Q ss_pred HHHcCcCCCccEEEEccCcchhhHHHHHH---hccCCHHHHhchhhHHHHHhhhCCCCcccccchhhHHHhhhhhhc---
Q 018259 142 YLACGIDNSKASVFVQSHVRAHVELMWLL---SSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLY--- 215 (359)
Q Consensus 142 ~lA~GlDp~kt~i~~qS~~~~~~eL~w~L---~~~~~i~~L~r~~~~k~~~~~~~~~~~~~g~l~YPvLQAADIl~~--- 215 (359)
|+++|+||+|+.||.||+|+.+..+.|+| +..++++++.+...|+.+ .+ +++++|+|+||+||||||++|
T Consensus 108 ~L~~g~dp~k~~i~~ns~w~~~~~~~~~l~~~~~~~tv~rm~~~~~~k~r---~~-~~is~~ef~YPlLQaaDil~l~~~ 183 (419)
T 2ts1_A 108 FLDFEADGNPAKIKNNYDWIGPLDVITFLRDVGKHFSVNYMMAKESVQSR---IE-TGISFTEFSYMMLQAYDFLRLYET 183 (419)
T ss_dssp SSCSSCSSSCCEEEETHHHHTTCCHHHHHHHTGGGCCHHHHHTSHHHHTT---TT-TCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhcCCCCCceEEEEchhhhhhchHHHHHHHHhcccCHHHHhccchhhhc---cC-CCcchHHHHHHHHHHHHHHHHhcc
Confidence 78899999999999999998866666654 567888887777666533 22 678999999999999999999
Q ss_pred -ccceeecccchHHHHHHHHHHHHHh-hhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCcCCCCCCCCCC
Q 018259 216 -QSDFVPVGEDQKQHLELTRELAERV-NYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQS 293 (359)
Q Consensus 216 -~adivpvG~DQ~~hieLaRdia~k~-n~~~g~~~~~~~~~~~~~~~~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~~s 293 (359)
++|+||||.||++|++++||+|+|+ |.. .|..+.. ++||++ || +|||||. +|
T Consensus 184 ~~~~i~~gG~DQ~~ni~lgrdlarr~~~~~------------------~~~~lt~---pll~~l-dG-~KMSKS~---~n 237 (419)
T 2ts1_A 184 EGCRLQIGGSDQWGNITAGLELIRKTKGEA------------------RAFGLTI---PLVTKA-DG-TKFGKTE---SG 237 (419)
T ss_dssp HCEEEEEEEGGGHHHHHHHHHHHHHHHC--------------------CCEEEEE---CCCCCT-TS-CCTTCCS---SC
T ss_pred CCCcEEeccHHHHHHHHHHHHHHHHhcCCC------------------Ceeeccc---ccccCC-Cc-ccccCCC---CC
Confidence 9999999999999999999999999 741 2334443 668998 78 6999997 57
Q ss_pred eeecCC---CHHHHHHHhhhccCCCCCCcccCCCCCCCcchHHHHHHHcCCCCHHHHHHHhc-cCCccc
Q 018259 294 RINLLD---PKDVIANKIKRCKTDSSAGLEFDNLERPECNNLLSIYQLISGKTKGEVAEECQ-NMNWGS 358 (359)
Q Consensus 294 ~I~L~D---~p~~I~kKI~rA~Td~~~~i~~~~~~~p~v~nl~~i~~~~~~~~~~~v~~~~~-~~~~g~ 358 (359)
+|+|+| +|++|++||+++ +| +.|.|++.||.++++++++++.++|. +.++++
T Consensus 238 aI~L~d~~tsp~~i~qki~~~-~D------------~~v~~~l~l~t~~~~~ei~~l~~~~~~g~~~~~ 293 (419)
T 2ts1_A 238 TIWLDKEKTSPYEFYQFWINT-DD------------RDVIRYLKYFTFLSKEEIEALEQELREAPEKRA 293 (419)
T ss_dssp CCBSSTTTSCHHHHHHHHHTC-CH------------HHHHHHHHHHCCCCHHHHHHHHHHHHHCTTSCH
T ss_pred eEecCCCCCCHHHHHHHHhcC-Cc------------hhHHHHHHHHHcCCHHHHHHHHHHHHccCCHHH
Confidence 999999 999999999995 22 45778888888777788999999996 445554
No 35
>1y42_X Tyrosyl-tRNA synthetase, mitochondrial; CYT-18, tRNA ligase, group I intron; HET: TYR; 1.95A {Neurospora crassa} PDB: 2rkj_A
Probab=100.00 E-value=1.5e-50 Score=404.43 Aligned_cols=252 Identities=18% Similarity=0.146 Sum_probs=205.5
Q ss_pred CCceEEEeeCCCCc-chhhhHHHHHHHHHHHhc-cCcEEEEEeccceecC-C---------CCHHHHHHHHHHHHHHHHH
Q 018259 77 VKKRIVSGVQPTGS-IHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITL-P---------YDTQQLSKATRETAAIYLA 144 (359)
Q Consensus 77 ~~~~i~sGi~PTG~-lHLGnyig~i~~~~~lQ~-~~~~~i~IADlhA~t~-~---------~~~~~l~~~~~~~~~~~lA 144 (359)
+++++|+||+|||. +|||||++ +.+|++||+ |++++++|||+||+|+ | .+++.++++++.+.+.++|
T Consensus 63 ~~~~vy~G~dPTg~sLHlGhlv~-l~~l~~lQ~~G~~~~~lIgD~haligdpsgk~~~R~~~~~e~i~~n~~~i~~~~~a 141 (392)
T 1y42_X 63 RRIGAYVGIDPTAPSLHVGHLLP-LMPLFWMYLEGYKAFTLIGGSTAKIGDPTGRLKSRDHLSSSDATMNMTKIHYQLKK 141 (392)
T ss_dssp CCCEEEEEECCCSSSCBGGGHHH-HHHHHHHHHHTCEEEEEECTTTTTTCCCCC-----------CHHHHHHHHHHHHHH
T ss_pred CCCEEEEeecCCCCCccHHHHHH-HHHHHHHHHcCCcEEEEEcCceeEeCCCCCcchhhccCCHHHHHHHHHHHHHHHHH
Confidence 36799999999999 99999996 789999998 7999999999999997 4 2678889999999888888
Q ss_pred cC-----------cC---CCccEEEEccCc-chhhHHHHH--HhccCCHHHHhchhhHHHHHhhhCCCCcccccchhhHH
Q 018259 145 CG-----------ID---NSKASVFVQSHV-RAHVELMWL--LSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVL 207 (359)
Q Consensus 145 ~G-----------lD---p~kt~i~~qS~~-~~~~eL~w~--L~~~~~i~~L~r~~~~k~~~~~~~~~~~~~g~l~YPvL 207 (359)
+| +| |+++.||.||+| +++.++.|+ +++.++++++.+..+||.+... .+++++|+|+||+|
T Consensus 142 ~~~~~~~~~~~~g~d~~~p~ks~i~~ns~~~~~~~~l~~l~~ig~~~~v~rml~~~~~k~r~~~--~~~is~gef~YPlL 219 (392)
T 1y42_X 142 LWENVDTQMRARGYEADWARKRGIVNNNHWWNKQPMLEVLRRVGHALRIGPMLSRDTVKNKMTQ--GDGVSFAEFTYPIM 219 (392)
T ss_dssp HHHHHHHHHHHTTCCCCTTCEEEEEETHHHHTTCCHHHHHHHHTTTCCHHHHHSSHHHHHTTSS--SSCCCHHHHHHHHH
T ss_pred HhccccccccccccccCCCcccEEEEccHHHhhhhHHHHHHHHhccCcHHHHhhhhHHHHHhcC--CCCcccHHHHHHHH
Confidence 65 45 789999999997 677889998 8999999997777688765432 35789999999999
Q ss_pred Hhhhhhhc----ccceeecccchHHHHHHHHHHHHHhhhhhCC--c---cccccCCCCCccccCCceecCCCCcccccCC
Q 018259 208 MASDILLY----QSDFVPVGEDQKQHLELTRELAERVNYLYGG--R---KWKKLGGRGGAIFKVPEPLIPPAGARVMSLT 278 (359)
Q Consensus 208 QAADIl~~----~adivpvG~DQ~~hieLaRdia~k~n~~~g~--~---~~~~~~~~~~~~~~~P~~l~~~~~~~l~sL~ 278 (359)
|||||+++ ++|+||||.||++|++++||||+|||+.|+. + ...+++ ++.|..+.. ++||++
T Consensus 220 QAaDil~l~~~~~~~i~~gG~DQ~~ni~~grdlarrfn~~~~~~~~~~~~~p~l~------~~~~~~l~~---pll~~l- 289 (392)
T 1y42_X 220 QGWDWFELFYQQGVQMQIGGSDQYGNIISGLEVVKAARESEPDPQERKYVTPKTA------LDECVGFTV---PLLTDS- 289 (392)
T ss_dssp HHHHHHHHHHHHCEEEEEECTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHSCCSG------GGSCEEEEC---CCCBCT-
T ss_pred HHHHHHHHhccCCccEEecCcchHhHHHHHHHHHHHHhhhccccccccccccccc------cCCcccccc---ccCcCC-
Confidence 99999987 6999999999999999999999999987621 0 001111 234555544 679999
Q ss_pred CCCCcCCCCCCCCCCeeecCC---CHHHHHHHhhhccCCCCCCcccCCCCCCCcchHHHHHHHcCCCCHHHHHHHhccC-
Q 018259 279 DGLSKMSKSAPSDQSRINLLD---PKDVIANKIKRCKTDSSAGLEFDNLERPECNNLLSIYQLISGKTKGEVAEECQNM- 354 (359)
Q Consensus 279 dg~~KMSKS~p~~~s~I~L~D---~p~~I~kKI~rA~Td~~~~i~~~~~~~p~v~nl~~i~~~~~~~~~~~v~~~~~~~- 354 (359)
|| +|||||. +|+|+|+| +|++|++||+++ + +++|.|++.+|.+++.++++++.++|..+
T Consensus 290 dG-~KMSKS~---~naI~L~d~~tsp~~i~qki~~~-~------------D~~v~~~l~~ft~l~~~ei~~l~~~~~~g~ 352 (392)
T 1y42_X 290 SG-AKFGKSA---GNAIWLDPYQTSVFDFYGYFVRR-S------------DQEVENLLKLFTFMPISEITKTMEEHIKDP 352 (392)
T ss_dssp TC-CBTTBCS---SSBCBSSTTTSCHHHHHHHHHTC-C------------TTTHHHHHHHHCCCCHHHHHHHHHHHHHCG
T ss_pred ch-hhccCCC---CCeeeccCCCCCHHHHHHHHHcC-C------------chhHHHHHHHHHhCChhHHHHHHHHHhcCC
Confidence 78 6999996 58999999 999999999995 2 25788888888877788899999999643
Q ss_pred Cccc
Q 018259 355 NWGS 358 (359)
Q Consensus 355 ~~g~ 358 (359)
++|+
T Consensus 353 ~~~~ 356 (392)
T 1y42_X 353 SKRV 356 (392)
T ss_dssp GGCH
T ss_pred CHHH
Confidence 4543
No 36
>3p0j_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, tyrrs, pseudod translation, ATP-binding, nucleotide-binding, ligase; HET: TYE; 2.89A {Leishmania major} PDB: 3p0i_A* 3p0h_A*
Probab=100.00 E-value=1.6e-40 Score=351.80 Aligned_cols=238 Identities=14% Similarity=0.141 Sum_probs=189.7
Q ss_pred CCCCCCCceEEEeeCCCCcchhhhHHHHHHHHHHHh-c--cCcEEEEEeccceecC-C--CCHHHHHHHHHHHHHHHHHc
Q 018259 72 ASSSSVKKRIVSGVQPTGSIHLGNYLGAIKNWIALQ-N--SYETLFFIVDLHAITL-P--YDTQQLSKATRETAAIYLAC 145 (359)
Q Consensus 72 ~~~~~~~~~i~sGi~PTG~lHLGnyig~i~~~~~lQ-~--~~~~~i~IADlhA~t~-~--~~~~~l~~~~~~~~~~~lA~ 145 (359)
+++...+..|+++- |||.+||||++++++.|.++| . |++++|+||||||+++ + .+++++++++.+++++|+|+
T Consensus 376 ~~~~~~~l~~~~~p-s~g~lHLGh~v~~~k~l~~~~~~~~g~~v~ilIaD~~A~i~d~~g~~~e~i~~~~~y~~~~~~al 454 (690)
T 3p0j_A 376 PAAPAKPHACMWMP-ALLKVPLDVAEGMIKVTKDFIAAHPEGTVTLVLPDWSAVASDEITGVEKDISAALQVNCALLKAY 454 (690)
T ss_dssp CCCCSSCEEEEECC-CCSSCBHHHHHHHHHHHHHHHHHCSSCEEEEEECTTHHHHTTCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCcceEEecC-CCCCcccchHHHHHHHHHHHHHHcCCCeEEEEEecchhhhCCCCCCCHHHHHHHHHHHHHHHHhc
Confidence 33444566788887 999999999999766466654 3 7899999999999998 3 58999999999999999999
Q ss_pred CcCCCccEEEEccCcchh-hHHHHH----HhccCCHHHHhchhhHHHHHhhhCCCCcccccchhhHHHhhhhhhccccee
Q 018259 146 GIDNSKASVFVQSHVRAH-VELMWL----LSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFV 220 (359)
Q Consensus 146 GlDp~kt~i~~qS~~~~~-~eL~w~----L~~~~~i~~L~r~~~~k~~~~~~~~~~~~~g~l~YPvLQAADIl~~~adiv 220 (359)
|+|| |++|++||+|+.. .+++|. ++..++++|+.+.. +.+++++|+++||+||||||+.+++|++
T Consensus 455 G~d~-k~~fv~~S~~~~~~~~~~~~~vi~la~~~tl~r~~~~~---------~~~~~~i~~~~YPlmQaaDi~~l~aDi~ 524 (690)
T 3p0j_A 455 GLPS-SVKIVTENEVILGNCDDFWVSVIGIARKNLLSHVEELY---------GGEVRNAGQVIAALMRVATALMLSVSHV 524 (690)
T ss_dssp TCCT-TSEEEEHHHHHHHTHHHHHHHHHHHHTTSCHHHHHHHT---------TSCCSSHHHHHHHHHHHHHHHHTTCSEE
T ss_pred CCCc-CeEEEECCchhccchhhHHHHHHHHHHhhhHHHHHHHh---------CCCCcchHHHHHHHHHHhhhhccCCCEE
Confidence 9998 7999999998754 256775 57788888877653 2367899999999999999999999999
Q ss_pred ecccchHHHHHHHHHHHHHhhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCcCCCCCCCCCCeeecCCC
Q 018259 221 PVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDP 300 (359)
Q Consensus 221 pvG~DQ~~hieLaRdia~k~n~~~g~~~~~~~~~~~~~~~~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~~s~I~L~D~ 300 (359)
|+|.||++|++|+||+++++++ |..++. .++|+|.++.++||||++ +|+|+|+|+
T Consensus 525 ~gG~DQ~~~~~LaRd~~~~~~~--------------------~~~~~~---~~~P~L~gp~~~~~~~s~--~~~I~l~D~ 579 (690)
T 3p0j_A 525 ISTSLDGHINAFAREYTKERID--------------------CVQTLE---GRIPALHRPGAAPAVLGA--DDVLYLDDN 579 (690)
T ss_dssp EECSTTTTTTHHHHHHTTTCSE--------------------EEECCC---CSSCCSSCCCC---------CCSCBTTCC
T ss_pred ecccccHHHHHHHHHHHHhccC--------------------cccccc---cccccCCCcccccCCCCC--CCeeeccCC
Confidence 9999999999999999998541 444444 679999666566667765 699999999
Q ss_pred HHHHHHHhhhccCCCCCCcccCCCCCCCcchHHHHHHHcC----------------C---CCHHHHHHHhccCC
Q 018259 301 KDVIANKIKRCKTDSSAGLEFDNLERPECNNLLSIYQLIS----------------G---KTKGEVAEECQNMN 355 (359)
Q Consensus 301 p~~I~kKI~rA~Td~~~~i~~~~~~~p~v~nl~~i~~~~~----------------~---~~~~~v~~~~~~~~ 355 (359)
|++|++||++|+|++. ++ ++ .+++|+.++. + .+++++.+.|..+.
T Consensus 580 ~~~i~~KI~kA~c~p~--ve----~n----p~l~~~~~~~~~~~~~~i~r~~~~Gg~~~~~~~eel~~~y~~G~ 643 (690)
T 3p0j_A 580 DMDIRRKIKKAYSAPN--EE----AN----PVISVAQHLLAQHGALSIERGEANGGNVSYNTPEALVADCGSGA 643 (690)
T ss_dssp HHHHHHHHHHSCCCTT--CS----CS----HHHHHHHHHHHHHSCEEECCCTTTTCCEEESSHHHHHHHHHSSS
T ss_pred HHHHHHHHHHhcCCCC--CC----CC----hHHHHHHHHhccCCceEEechhhhCCCCCccCHHHHHHHHHcCC
Confidence 9999999999999983 22 33 4888888751 1 57999999997653
No 37
>1nzj_A Hypothetical protein YADB; Zn cluster, glutamyl T-RNA synthetase, structural genomics, unknown function; 1.50A {Escherichia coli} SCOP: c.26.1.1 PDB: 2zlz_A* 4a91_A*
Probab=99.23 E-value=9.8e-12 Score=119.96 Aligned_cols=190 Identities=16% Similarity=0.205 Sum_probs=109.6
Q ss_pred eeCCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEeccceecCCCCHHHHHHHHHHHHHHHHHcCcCCCccEEEEccCcch
Q 018259 84 GVQPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQSHVRA 162 (359)
Q Consensus 84 Gi~PTG~lHLGnyig~i~~~~~lQ~-~~~~~i~IADlhA~t~~~~~~~l~~~~~~~~~~~lA~GlDp~kt~i~~qS~~~~ 162 (359)
--.|||.+||||+.+++.+|...+. +.+.++-|.|... .....+.+..+.+++.++|+++++. +++||+..+
T Consensus 11 APsPtG~LHiG~~rtal~n~l~Ar~~~g~~ilRieDtD~------~R~~~~~~~~I~~dL~~LGl~~D~~-~~~qSer~~ 83 (298)
T 1nzj_A 11 APSPSGELHFGSLIAALGSYLQARARQGRWLVRIEDIDP------PREVPGAAETILRQLEHYGLHWDGD-VLWQSQRHD 83 (298)
T ss_dssp CCCTTSCCCHHHHHHHHHHHHHHHHTTCEEEEEECCSCG------GGSCTTHHHHHHHHHHHTTCCCSSC-CEEGGGCHH
T ss_pred CcCCCCCccHHHHHHHHHHHHHHHhcCCeEEEEEecCCc------hhhHHHHHHHHHHHHHHcCCCCCCC-CeeeeCCHH
Confidence 3467899999999999999988876 5566678888521 1234567788999999999999974 899999654
Q ss_pred h-hHHH-------HHHhccCCHHHHhchhh-HHHHHhh---hC---------------CCCcccccchhhH-HHhhhhhh
Q 018259 163 H-VELM-------WLLSSATPIGWLNKMIQ-FKEKSHK---AG---------------GENVGVALLTYPV-LMASDILL 214 (359)
Q Consensus 163 ~-~eL~-------w~L~~~~~i~~L~r~~~-~k~~~~~---~~---------------~~~~~~g~l~YPv-LQAADIl~ 214 (359)
. .+.. +.+.|.+|-.+|++... |...-+. .+ .++.-.|.+.++. .+..|.++
T Consensus 84 ~y~~~~~~L~~~G~aY~c~ct~~~l~~~~~~Y~g~cr~~~~~g~~~~~R~r~~~~~~~f~D~~~G~~~~~~~~~~~D~VL 163 (298)
T 1nzj_A 84 AYREALAWLHEQGLSYYCTCTRARIQSIGGIYDGHCRVLHHGPDNAAVRIRQQHPVTQFTDQLRGIIHADEKLAREDFII 163 (298)
T ss_dssp HHHHHHHHHHHTTCEEEECCCHHHHHHTTSSCCCTTTTTCCCSTTCEEEECCSSCCCEEEETTTEEEECCHHHHHSCCEE
T ss_pred HHHHHHHHHHHcCCcccCcCCHHHHHHcCCCCCCccccCCcCCCCCcEEEecCCcccceehhhCcccccCcccCCCCEEE
Confidence 2 1111 11457888888876410 0000000 00 0011234444554 45567777
Q ss_pred cccceeec-------------------ccchHHHHHHHHHHHHHhhhhhCCccccccCCCCCccccCCceecCCCCcccc
Q 018259 215 YQSDFVPV-------------------GEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVM 275 (359)
Q Consensus 215 ~~adivpv-------------------G~DQ~~hieLaRdia~k~n~~~g~~~~~~~~~~~~~~~~~P~~l~~~~~~~l~ 275 (359)
+++|-.|. |.|+..+...-..+.+-++ ++.|...+. ++|.
T Consensus 164 ~R~dG~PtY~la~vvdD~~~giThvIrG~D~l~~t~~q~~l~~alG------------------~~~p~~~H~---pll~ 222 (298)
T 1nzj_A 164 HRRDGLFAYNLAVVVDDHFQGVTEIVRGADLIEPTVRQISLYQLFG------------------WKVPDYIHL---PLAL 222 (298)
T ss_dssp ECTTSCBCHHHHHHHHHHHTTCCEEEEEGGGHHHHHHHHHHHHHHT------------------CCCCEEEEE---CBCC
T ss_pred ECCCCCEeeeeeeeeEHHhcCCCEEEeCccccccHHHHHHHHHHcC------------------CCCCeEEEe---eeeE
Confidence 66555555 9999988776666667665 334766555 5577
Q ss_pred cCCCCCCcCCCCCCCCCCeeecCCCHHHHH
Q 018259 276 SLTDGLSKMSKSAPSDQSRINLLDPKDVIA 305 (359)
Q Consensus 276 sL~dg~~KMSKS~p~~~s~I~L~D~p~~I~ 305 (359)
+. +| +||||+.-+ ..|.-.++...+.
T Consensus 223 ~~-~g-~KLSKR~g~--~~v~~~~~~~~~~ 248 (298)
T 1nzj_A 223 NP-QG-AKLSKQNHA--PALPKGDPRPVLI 248 (298)
T ss_dssp C-----------------CCCSSCCHHHHH
T ss_pred CC-CC-CcccccCCc--cChhcCCccHHHH
Confidence 76 66 699999732 2343334444433
No 38
>2ja2_A Glutamyl-tRNA synthetase; non-discriminating glutamyl-tRNA aminoacylation, protein biosynthesis, aminoacyl-tRNA synthetase, ligase; 1.65A {Mycobacterium tuberculosis} PDB: 3pny_A 3pnv_A
Probab=99.12 E-value=8.6e-11 Score=120.58 Aligned_cols=200 Identities=18% Similarity=0.179 Sum_probs=129.8
Q ss_pred eeCCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEeccceecCCCCHHHHHHHHHHHHHHHHHcCcCCCcc-------EEE
Q 018259 84 GVQPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKA-------SVF 155 (359)
Q Consensus 84 Gi~PTG~lHLGnyig~i~~~~~lQ~-~~~~~i~IADlhA~t~~~~~~~l~~~~~~~~~~~lA~GlDp~kt-------~i~ 155 (359)
-=.|||.+||||+..++.+|...+. +.+.++-|-|.-. .....+....+..++.++||+++.. .+|
T Consensus 12 APsPTG~LHiG~~rtAL~n~l~Ar~~gG~fiLRieDtD~------~R~~~~~~~~I~~~L~wlGl~wDegp~~gG~~~~~ 85 (498)
T 2ja2_A 12 CPSPTGTPHVGLVRTALFNWAYARHTGGTFVFRIEDTDA------QRDSEESYLALLDALRWLGLDWDEGPEVGGPYGPY 85 (498)
T ss_dssp CCCSSSSCBHHHHHHHHHHHHHHHHHTCEEEECBCCCCT------TTCCHHHHHHHHHHHHHHTCCCSBBTTTBCTTCCC
T ss_pred CcCCCCCccHHHHHHHHHHHHHHHHcCCEEEEEECcCCC------cccChHHHHHHHHHHHHcCCCcCCCcCcCCCCCCe
Confidence 3368899999999999999988876 4444444888721 1235567788889999999999974 589
Q ss_pred EccCcchhhHHHH--H------HhccCCHHHHhchh---------hHHH---------HHh--hhCCC----------Cc
Q 018259 156 VQSHVRAHVELMW--L------LSSATPIGWLNKMI---------QFKE---------KSH--KAGGE----------NV 197 (359)
Q Consensus 156 ~qS~~~~~~eL~w--~------L~~~~~i~~L~r~~---------~~k~---------~~~--~~~~~----------~~ 197 (359)
+||+..+.-..+. + +.|.+|-.+|+++. .|.. ..+ ..+.. .+
T Consensus 86 ~QS~r~~~y~~~~~~L~~~g~aY~c~ct~eel~~~r~~~~~~~~~~Y~~~cr~l~~~e~~~~~~~g~~~~iR~k~~~~~~ 165 (498)
T 2ja2_A 86 RQSQRAEIYRDVLARLLAAGEAYHAFSTPEEVEARHVAAGRNPKLGYDNFDRHLTDAQRAAYLAEGRQPVVRLRMPDDDL 165 (498)
T ss_dssp BGGGCHHHHHHHHHHHHHTTSEEEECCCHHHHHHHHHHTTCCTTSCCCCGGGGCCHHHHHHHHHTTCCCEEEECCCSSCE
T ss_pred eeecCHHHHHHHHHHHHHcCCeEEeCCCHHHHHHHHHHHhcCCCCCCCCccccCCHHHHHhhhccCCCceEEEECCCCce
Confidence 9999765322111 1 45889988886542 1110 000 00100 00
Q ss_pred -----ccccchhhHHHhhhhhhcccceeec-------------------ccchHHHHHHHHHHHHHhhhhhCCccccccC
Q 018259 198 -----GVALLTYPVLMASDILLYQSDFVPV-------------------GEDQKQHLELTRELAERVNYLYGGRKWKKLG 253 (359)
Q Consensus 198 -----~~g~l~YPvLQAADIl~~~adivpv-------------------G~DQ~~hieLaRdia~k~n~~~g~~~~~~~~ 253 (359)
-.|.+.++.-+.-|++++++|-.|. |.|+..+...-+.+.+-|+. +|..
T Consensus 166 ~~~D~v~G~i~~~~~~~~D~Vi~R~Dg~ptY~lA~vVDD~~mgithviRG~D~~~~t~~q~~l~~aL~~-~g~g------ 238 (498)
T 2ja2_A 166 AWNDLVRGPVTFAAGSVPDFALTRASGDPLYTLVNPCDDALMKITHVLRGEDLLPSTPRQLALHQALIR-IGVA------ 238 (498)
T ss_dssp EEEETTTEEEEECTTCSCCCBSBCTTSCBCHHHHHHHHHHHTTCCEEEEEGGGGGGHHHHHHHHHHHHH-TTSC------
T ss_pred EEEecccceEeecccccCcceeEccCCCcchhhHHHHHhhhcCCCEEEEChhhhhccHHHHHHHHHHHh-hcCC------
Confidence 1244556655556666655555554 99999999999999999976 5310
Q ss_pred CCCCccccCCceecCCCCcccccCCCCCCcCCCCCCCCCCeeecCC------CHHHHHHHhhhc
Q 018259 254 GRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLD------PKDVIANKIKRC 311 (359)
Q Consensus 254 ~~~~~~~~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~~s~I~L~D------~p~~I~kKI~rA 311 (359)
++.|+..+. +.|.+. +| +||||++. .+.|.+ .|+.|..-+...
T Consensus 239 ------~~~P~~~h~---plil~~-~g-~KLSKR~g----~~~l~~~r~~G~~peAl~~~l~~l 287 (498)
T 2ja2_A 239 ------ERIPKFAHL---PTVLGE-GT-KKLSKRDP----QSNLFAHRDRGFIPEGLLNYLALL 287 (498)
T ss_dssp ------CCCCEEEEE---CCEECS-SS-SBCCTTSG----GGBHHHHHHHTCCHHHHHHHHHTS
T ss_pred ------CCCCeEEEe---eeeECC-CC-CcccccCC----cccHHHHHhCCCCHHHHHHHHHHh
Confidence 445776655 447776 66 69999974 333433 577777776663
No 39
>1j09_A Glutamyl-tRNA synthetase; glurs-ATP-Glu complex, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; HET: GLU ATP; 1.80A {Thermus thermophilus} SCOP: a.97.1.1 c.26.1.1 PDB: 1n75_A* 1n77_A* 1n78_A* 2cuz_A* 2cv0_A* 2cv1_A* 2cv2_A* 2dxi_A* 1g59_A 1gln_A
Probab=99.10 E-value=4.2e-11 Score=122.04 Aligned_cols=193 Identities=17% Similarity=0.132 Sum_probs=128.2
Q ss_pred eCCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEeccceecCCCCHHHHHHHHHHHHHHHHHcCcCCCccE-------EEE
Q 018259 85 VQPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKAS-------VFV 156 (359)
Q Consensus 85 i~PTG~lHLGnyig~i~~~~~lQ~-~~~~~i~IADlhA~t~~~~~~~l~~~~~~~~~~~lA~GlDp~kt~-------i~~ 156 (359)
=.|||.+||||+..++.+|...+. +.+.++-|-|.-. .....+....+..++.++||+++... .|.
T Consensus 8 PsPtG~LHiG~~rtal~n~l~Ar~~~G~filRieDtD~------~R~~~~~~~~I~~dl~wlGl~wd~~~~~gG~~gp~~ 81 (468)
T 1j09_A 8 PSPTGDPHVGTAYIALFNYAWARRNGGRFIVRIEDTDR------ARYVPGAEERILAALKWLGLSYDEGPDVGGPHGPYR 81 (468)
T ss_dssp CCCSSSCBHHHHHHHHHHHHHHHHTTCEEEECBCCCCT------TSCCTTHHHHHHHHHHHTTCCCSBBTTTBCTTCCCB
T ss_pred CCCCCCccHHHHHHHHHHHHHHHHcCCEEEEEeCcCCC------cccChHHHHHHHHHHHHcCCCCCCCCCCCCCCCCee
Confidence 368899999999999999988776 5566677888721 12244667788899999999999752 499
Q ss_pred ccCcchhh-HHHH-H------HhccCCHHHHhchh-------------hHHHHHhh--hCC-----------CCc-----
Q 018259 157 QSHVRAHV-ELMW-L------LSSATPIGWLNKMI-------------QFKEKSHK--AGG-----------ENV----- 197 (359)
Q Consensus 157 qS~~~~~~-eL~w-~------L~~~~~i~~L~r~~-------------~~k~~~~~--~~~-----------~~~----- 197 (359)
||+..+.- +..- + +.|.+|-.+|.++. +..+..+. .|. +.+
T Consensus 82 QS~r~~~y~~~~~~L~~~G~aY~c~ct~~el~~~r~~~~~y~~~cr~l~~~e~~~~~~~g~~~~~R~k~~~~~~~~~~D~ 161 (468)
T 1j09_A 82 QSERLPLYQKYAEELLKRGWAYRAFETPEELEQIRKEKGGYDGRARNIPPEEAEERARRGEPHVIRLKVPRPGTTEVKDE 161 (468)
T ss_dssp GGGCHHHHHHHHHHHHHHTSEEEECCCHHHHHHHHHHHSSCCCGGGGSCHHHHHHHHHTTCCCEEEECCCSSCEEEEEET
T ss_pred ccCCHHHHHHHHHHHHHcCCeEEcCCCHHHHHHHHHHcCCCCCcccCCCHHHHHHHHhcCCCceEEEecCCCCceEEEec
Confidence 99975421 1111 1 45888888886532 12211111 110 001
Q ss_pred ccccchhhHHHhhhhhhcccceeec-------------------ccchHHHHHHHHHHHHHhhhhhCCccccccCCCCCc
Q 018259 198 GVALLTYPVLMASDILLYQSDFVPV-------------------GEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGA 258 (359)
Q Consensus 198 ~~g~l~YPvLQAADIl~~~adivpv-------------------G~DQ~~hieLaRdia~k~n~~~g~~~~~~~~~~~~~ 258 (359)
--|.+.+|..+.-|.+++++|..|. |.|+..|...-..+.+.++
T Consensus 162 ~~G~~~~~~~~~~D~Vl~R~dg~PtY~~a~vvDD~~~githvirG~D~~~~t~~q~~l~~alg----------------- 224 (468)
T 1j09_A 162 LRGVVVYDNQEIPDVVLLKSDGYPTYHLANVVDDHLMGVTDVIRAEEWLVSTPIHVLLYRAFG----------------- 224 (468)
T ss_dssp TTEEEEEEGGGSCCCEEECTTSCBCHHHHHHHHHHHTTCCEEEEEGGGGGGHHHHHHHHHHHT-----------------
T ss_pred cceeEeecccCCCCeEEEecCCCeeehhHHHHHHHHCCCCeEEEChhhhhhHHHHHHHHHHcC-----------------
Confidence 1245677777777888876666666 9999999999999998886
Q ss_pred cccCCceecCCCCcccccCCCCCCcCCCCCCCCCCeeecCC------CHHHHHHHhhh
Q 018259 259 IFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLD------PKDVIANKIKR 310 (359)
Q Consensus 259 ~~~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~~s~I~L~D------~p~~I~kKI~r 310 (359)
++.|+..+. ++|.+. +| +||||++.+ . .|.+ .|+.|.+-+..
T Consensus 225 -~~~p~~~h~---~li~~~-~g-~klSKR~g~---~-~l~~~~~~G~~peal~~~l~~ 272 (468)
T 1j09_A 225 -WEAPRFYHM---PLLRNP-DK-TKISKRKSH---T-SLDWYKAEGFLPEALRNYLCL 272 (468)
T ss_dssp -CCCCEEEEE---CCCBCT-TS-CBCCTTTSC---C-BHHHHHHTTCCHHHHHHHHHH
T ss_pred -CCCCeEEEe---eeeeCC-CC-Cccccccch---h-hHHHHHHCCCCHHHHHHHHHH
Confidence 334765544 446676 66 699999742 2 3332 57777777766
No 40
>3afh_A Glutamyl-tRNA synthetase 2; protein-substrate complex, aminoacyl-tRNA synthetase, ATP-binding, ligase, nucleotide-binding; HET: GSU; 2.00A {Thermotoga maritima} PDB: 3akz_B*
Probab=99.02 E-value=9.1e-11 Score=120.13 Aligned_cols=200 Identities=16% Similarity=0.163 Sum_probs=126.8
Q ss_pred ceEEEeeCCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEeccceecCCCCHHHHHHHHHHHHHHHHHcCcCCCccE----
Q 018259 79 KRIVSGVQPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKAS---- 153 (359)
Q Consensus 79 ~~i~sGi~PTG~lHLGnyig~i~~~~~lQ~-~~~~~i~IADlhA~t~~~~~~~l~~~~~~~~~~~lA~GlDp~kt~---- 153 (359)
.+.=..=.|||.+||||+..++.+|...+. +.++++-|-|.-. .....+....+..++.++|++++...
T Consensus 26 v~~RFAPsPtG~LHiG~~rtal~n~l~Ar~~~G~filRieDtD~------~R~~~~~~~~I~~dL~wlGl~wDe~~~~gG 99 (488)
T 3afh_A 26 VRVRFAPSPTGHLHVGGARTALFNWMFARKEGGKFILRIEDTDT------ERSSREYEQQILESLRWCGLDWDEGPDIGG 99 (488)
T ss_dssp CEEEECCCCSSSCBHHHHHHHHHHHHHHHHHTCEEEECBCCCCT------TTCCHHHHHHHHHHHHHTTCCCSBBTTTBC
T ss_pred ceEEECCCCCCCccHHHHHHHHHHHHHHHHcCCEEEEEEeeCCc------ccccHHHHHHHHHHHHHcCCCCCcCCCCCC
Confidence 344445578899999999999999988776 5667778888721 12355667788899999999999753
Q ss_pred ---EEEccCcchhh-HHHH-H------HhccCCHHHHhch--hhHHH--HHhhhC---------C-CCc-----ccccch
Q 018259 154 ---VFVQSHVRAHV-ELMW-L------LSSATPIGWLNKM--IQFKE--KSHKAG---------G-ENV-----GVALLT 203 (359)
Q Consensus 154 ---i~~qS~~~~~~-eL~w-~------L~~~~~i~~L~r~--~~~k~--~~~~~~---------~-~~~-----~~g~l~ 203 (359)
.|+||+..+.- +..- + +.|.+|-.+|++. +.|.. .....| . ..+ -.|.+.
T Consensus 100 ~~gp~~QSer~~~y~~~~~~L~~~G~aY~c~ct~eel~~~~~~~Y~~~~~~~~~G~~~~iR~k~~~~~~~~~D~v~G~~~ 179 (488)
T 3afh_A 100 DFGPYRQSERLEIYREYAEKLVEDKRAYYVVYDKEDPSKELFTTYEYPHEYKEKGHPVTIKFKVLPGKTSFEDLLKGYME 179 (488)
T ss_dssp TTCCCBGGGCHHHHHHHHHHHHHTTSEEEEEECSSSTTSEEEEESSCCHHHHHTTCCEEEEECCCSSEEEEEETTTEEEE
T ss_pred CCCCeeeeCCHHHHHHHHHHHHHcCCeEecCCCHHHHHhhcCCCCCchhhHHhcCCCceEEEECCCCceeEEeccceeEe
Confidence 69999975421 1111 1 3467776666542 01110 000001 0 000 123333
Q ss_pred hhHHHhhhhhh-------------------cccceeecccchHHHHHHHHHHHHHhhhhhCCccccccCCCCCccccCCc
Q 018259 204 YPVLMASDILL-------------------YQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPE 264 (359)
Q Consensus 204 YPvLQAADIl~-------------------~~adivpvG~DQ~~hieLaRdia~k~n~~~g~~~~~~~~~~~~~~~~~P~ 264 (359)
++.-+.-|.++ .+.++|.-|.|+..+...-..+.+.|+ ++.|+
T Consensus 180 ~~~~~~~D~Vl~R~DG~PtY~lA~vVDD~~mgIThViRG~D~l~~tp~q~~l~~aLG------------------~~~P~ 241 (488)
T 3afh_A 180 FDNSTLEDFIIMKSNGFPTYNFAVVVDDHLMRISHVFRGEDHLSNTPKQLMIYEAFG------------------WEAPV 241 (488)
T ss_dssp EEGGGSCCEEEECTTSCBCHHHHHHHHHHHTTCSEEEEEGGGGGGHHHHHHHHHHHT------------------CCCCE
T ss_pred ecCCCCCCeEEEecCCCeehhhHHHHHHHhcCCCEEEEchhhhhCHHHHHHHHHHcC------------------CCCCe
Confidence 33333334333 356667679999999999998888886 34577
Q ss_pred eecCCCCcccccCCCCCCcCCCCCCCCCCeeecCC------CHHHHHHHhhhc
Q 018259 265 PLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLD------PKDVIANKIKRC 311 (359)
Q Consensus 265 ~l~~~~~~~l~sL~dg~~KMSKS~p~~~s~I~L~D------~p~~I~kKI~rA 311 (359)
..+. ++|.+. +| +||||++. .+.|.+ .|+.|.+-+...
T Consensus 242 f~H~---pli~~~-~g-~KLSKR~g----~~~l~~~r~~G~~peal~n~l~~l 285 (488)
T 3afh_A 242 FMHI---PLILGS-DR-TPLSKRHG----ATSVEHFRREGILSRALMNYLALL 285 (488)
T ss_dssp EEEE---CCEECT-TS-SBCCTTTS----CCBHHHHHHHTCCHHHHHHHHHHT
T ss_pred EEEE---eeeeCC-CC-CcccCcCC----cccHHHHHHCCCCHHHHHHHHHHh
Confidence 6665 457786 67 69999973 344443 688888877763
No 41
>3al0_C Glutamyl-tRNA(Gln) amidotransferase subunit C, GL tRNA synthetase 2; protein-RNA complex, ligase-RNA complex; HET: GSU; 3.37A {Thermotoga maritima}
Probab=98.90 E-value=6.2e-11 Score=123.93 Aligned_cols=200 Identities=16% Similarity=0.153 Sum_probs=124.0
Q ss_pred ceEEEeeCCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEeccceecCCCCHHHHHHHHHHHHHHHHHcCcCCCccE----
Q 018259 79 KRIVSGVQPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKAS---- 153 (359)
Q Consensus 79 ~~i~sGi~PTG~lHLGnyig~i~~~~~lQ~-~~~~~i~IADlhA~t~~~~~~~l~~~~~~~~~~~lA~GlDp~kt~---- 153 (359)
.++=..=.|||.+||||+.+++.+|...+. +.+.++-|.|. ++. ....+....+..++.++|++++...
T Consensus 130 v~~RFaPsPTG~LHiG~artAl~n~l~Ar~~~G~~ilRieDt----D~~--r~~~~~~~~I~~dL~wlGl~~D~~~~~gG 203 (592)
T 3al0_C 130 VRVRFAPSPTGHLHVGGARTALFNWMFARKEGGKFILRIEDT----DTE--RSSREYEQQILESLRWCGLDWDEGPDIGG 203 (592)
T ss_dssp CEEEECCCSSSCCBHHHHHHHHHHHHHHHHHTCEEEECBCCC----CSS--SCCHHHHHHHHHHHHHTTCCCSBBTTTBC
T ss_pred EEEEECCCCCCCccHHHHHHHHHHHHHHHhcCCcEEEEecCc----Chh--hccHHHHHHHHHHHHHcCCCCCCCCCcCC
Confidence 445455688999999999999999987765 56777888884 311 2345667788889999999999742
Q ss_pred ---EEEccCcchhh-HHH-HH------HhccCCHHHHhch--hhHHH--HHhhhC---------C-C-----Ccccccch
Q 018259 154 ---VFVQSHVRAHV-ELM-WL------LSSATPIGWLNKM--IQFKE--KSHKAG---------G-E-----NVGVALLT 203 (359)
Q Consensus 154 ---i~~qS~~~~~~-eL~-w~------L~~~~~i~~L~r~--~~~k~--~~~~~~---------~-~-----~~~~g~l~ 203 (359)
.|+||+..+.- +.. .+ +.|.+|-.+|++. +.|.. .....| . . +.-.|.+.
T Consensus 204 ~~gp~~qSer~~~y~~~~~~L~~~G~aY~c~ct~~el~~~~~~~Y~~~~~~~~~g~~~~iR~k~~~~~~~~~D~v~G~~~ 283 (592)
T 3al0_C 204 DFGPYRQSERLEIYREYAEKLVEDKRAYYVVYDKEDPSKELFTTYEYPHEYKEKGHPVTIKFKVLPGKTSFEDLLKGYME 283 (592)
T ss_dssp TTCCCBSTTCHHHHHHHHHHHHHTTTEEEEEEETTEEEEECCCCSSCCHHHHHTTCCEEEEECCCSSCCEECCTTTCSEE
T ss_pred CCCCeeeeCCHHHHHHHHHHHHHcCCceEecCCHHHHHhhcCCCCCcHHHHhhcCCCceEEEECCCCCceeeecccceee
Confidence 68999975421 111 11 3466665555442 00000 000000 0 0 00112233
Q ss_pred ----------------hhHHHhhhhhh---cccceeecccchHHHHHHHHHHHHHhhhhhCCccccccCCCCCccccCCc
Q 018259 204 ----------------YPVLMASDILL---YQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPE 264 (359)
Q Consensus 204 ----------------YPvLQAADIl~---~~adivpvG~DQ~~hieLaRdia~k~n~~~g~~~~~~~~~~~~~~~~~P~ 264 (359)
||..+-|+++- .+.++|.-|.|+..|...-+.+.+.|+ ++.|+
T Consensus 284 ~~~~~~~D~Vl~R~dg~ptY~~a~vvDD~~~githvirG~D~~~~t~~q~~l~~alg------------------~~~P~ 345 (592)
T 3al0_C 284 FDNSTLEDFIIMKSNGFPTYNFAVVVDDHLMRISHVFRGEDHLSNTPKQLMIYEAFG------------------WEAPV 345 (592)
T ss_dssp CCSSSSCCEEEECTTSCCCHHHHHHHHHHHTTCSBCCEEGGGGGGHHHHHHHHTTTT------------------CCCCB
T ss_pred eccccCCCeEEEcCCCCeehhhHHHHHHHhcCCCeEEEchhhHhCHHHHHHHHHHhC------------------CCCCe
Confidence 44444333322 356777779999999998888888775 34465
Q ss_pred eecCCCCcccccCCCCCCcCCCCCCCCCCeeecCC------CHHHHHHHhhhc
Q 018259 265 PLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLD------PKDVIANKIKRC 311 (359)
Q Consensus 265 ~l~~~~~~~l~sL~dg~~KMSKS~p~~~s~I~L~D------~p~~I~kKI~rA 311 (359)
..+. ++|.+. +| +||||++. .+.|.+ .|+.|..-+...
T Consensus 346 ~~hl---pli~~~-~g-~KLSKR~g----~~~l~~~~~~G~~peal~~~l~~l 389 (592)
T 3al0_C 346 FMHI---PLILGS-DR-TPLSKRHG----ATSVEHFRREGILSRALMNYLALL 389 (592)
T ss_dssp CCEE---CCCBCT-TS-SBCCTTTC----SSBHHHHHHTTCCHHHHHHHHTTT
T ss_pred EEEe---eeeeCC-CC-CcccccCC----cccHHHHHHCCCCHHHHHHHHHHh
Confidence 5444 457776 66 69999974 244443 688888888763
No 42
>2cfo_A Glutamyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase, ATP-binding, nucleotide-B; HET: GLU; 2.45A {Synechococcus elongatus}
Probab=98.82 E-value=2.1e-08 Score=102.84 Aligned_cols=195 Identities=17% Similarity=0.174 Sum_probs=122.7
Q ss_pred EeeCCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEeccceecCCCCHHHHHHHHHHHHHHHHHcCcCCCccEEEEccCcc
Q 018259 83 SGVQPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQSHVR 161 (359)
Q Consensus 83 sGi~PTG~lHLGnyig~i~~~~~lQ~-~~~~~i~IADlhA~t~~~~~~~l~~~~~~~~~~~lA~GlDp~kt~i~~qS~~~ 161 (359)
..=.|||.+||||...++.+|...+. +.+.++-|-|.-. .....+.+..+..++.++||+++. .+|.||+..
T Consensus 6 FAPSPtG~lHiG~artal~n~l~Ar~~~G~filRieDtD~------~R~~~~~~~~i~~dL~wLGl~wde-~~~~QS~r~ 78 (492)
T 2cfo_A 6 LAPSPTGNLHIGTARTAVFNWLYARHRGGKFILRIEDTDR------ERSRPEYTENILEGLQWLGLTWDE-GPYFQSDRL 78 (492)
T ss_dssp ECCCTTSCCBHHHHHHHHHHHHHHHHTTCEEEEEECCCSS------SSCCHHHHHHHHHHHHHTTCCCSE-EEEEGGGCH
T ss_pred eCCCCCCCccHHHHHHHHHHHHHHHhcCCeEEEEEeeCCc------cccchHHHHHHHHHHHHcCCCCCC-CCccccCCH
Confidence 34468899999999999999987765 5667778888732 122456778888999999999996 489999864
Q ss_pred h-hhHHHH-H------HhccCCHHHHhchh----------hHH---------HHHh--hhCCC-----Ccc---------
Q 018259 162 A-HVELMW-L------LSSATPIGWLNKMI----------QFK---------EKSH--KAGGE-----NVG--------- 198 (359)
Q Consensus 162 ~-~~eL~w-~------L~~~~~i~~L~r~~----------~~k---------~~~~--~~~~~-----~~~--------- 198 (359)
+ +.+..- + +.|.++-.+|+.+. .|. +..+ ..|.. .++
T Consensus 79 ~~y~~~~~~Li~~G~AY~c~ct~~el~~~r~~~~~~g~~~~y~~~cr~ls~~e~~~~~~~g~~~~iR~k~~~~~~~~~~D 158 (492)
T 2cfo_A 79 DLYRQAIQTLLDKGLAYYCYCTPEELEALRAEQKAKGQAPRYDNRHRHLTPEEQAAFEAAGRTPVIRFKIEDDRQIEWQD 158 (492)
T ss_dssp HHHHHHHHHHHHTTSEEEECCCHHHHHHHHHHHHHHTCCSSCCCTTTTCCHHHHHHHHHTTCCCEEEECCCTTCEEEEEE
T ss_pred HHHHHHHHHHHHCCCceEecCCHHHHHHHHHHHHhcCCCCCCCcccccCCHHHHHHHHhCCCCceEEEEcCCCCceEEEe
Confidence 3 222111 1 34777777765431 010 0000 00100 000
Q ss_pred --cccchhhHHHh-hhh------------------------hhcccceeecccchHHHHHHHHHHHHHhhhhhCCccccc
Q 018259 199 --VALLTYPVLMA-SDI------------------------LLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKK 251 (359)
Q Consensus 199 --~g~l~YPvLQA-ADI------------------------l~~~adivpvG~DQ~~hieLaRdia~k~n~~~g~~~~~~ 251 (359)
-|.+.++.-.. .|. ...+.|+|.-|.|+..+-..-..+.+.++
T Consensus 159 ~v~G~~~~~~~~~~~D~Vl~R~d~~p~~G~PtY~la~vvDD~~~gIthviRG~D~~~~t~~q~~l~~alg---------- 228 (492)
T 2cfo_A 159 LVRGRVSWQGADLGGDMVIARAAPRGEIGYPLYNLVVVVDDIAMGITDVIRGEDHIGNTPKQILLYEALG---------- 228 (492)
T ss_dssp TTTEEEEEEGGGGCSSEEEECSCCTTSCCCBCHHHHHHHHHHHTTCSEEEEEGGGTTHHHHHHHHHHHTT----------
T ss_pred cceeeeeecccccCCCeEEEEecCCCCCCceeehhhhhhhhhcCCCCeEEEchhhhhCHHHHHHHHHHcC----------
Confidence 12233333333 333 34556677899999999888888888765
Q ss_pred cCCCCCccccCCceecCCCCcccccCCCCCCcCCCCCCCCCCeeecCC------CHHHHHHHhhhc
Q 018259 252 LGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLD------PKDVIANKIKRC 311 (359)
Q Consensus 252 ~~~~~~~~~~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~~s~I~L~D------~p~~I~kKI~rA 311 (359)
++.|...+. ++|.+. +| +|||||+.+ +.|.+ .|+.|..-+...
T Consensus 229 --------~~~P~~~H~---plil~~-~g-~KLSKr~g~----~~l~~~r~~G~~peal~~~l~~l 277 (492)
T 2cfo_A 229 --------ATPPNFAHT---PLILNS-TG-QKLSKRDGV----TSISDFRAMGYLAPALANYMTLL 277 (492)
T ss_dssp --------CCCCEEEEE---CCEECS-SS-SBCCTTSSC----CBHHHHHHTTCCHHHHHHHHHHT
T ss_pred --------CCCceEEEe---eeEECC-CC-CEecccCCc----ccHHHHHHCCCCHHHHHHHHHHh
Confidence 345766555 457776 67 699999742 23332 677777777663
No 43
>2o5r_A Glutamyl-tRNA synthetase 1; TM1351, EC 6.1.1.17, glutamate-T ligase 1, glurs 1, structural genomics, joint center for ST genomics, JCSG; 2.34A {Thermotoga maritima}
Probab=98.42 E-value=1.7e-06 Score=88.45 Aligned_cols=200 Identities=17% Similarity=0.118 Sum_probs=117.4
Q ss_pred ceEEEeeCCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEeccceecCCCCHHHHHHHHHHHHHHHHHcCcCCCcc-----
Q 018259 79 KRIVSGVQPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKA----- 152 (359)
Q Consensus 79 ~~i~sGi~PTG~lHLGnyig~i~~~~~lQ~-~~~~~i~IADlhA~t~~~~~~~l~~~~~~~~~~~lA~GlDp~kt----- 152 (359)
.+....-.|||.+||||..+++.+|.-.+. +...++-|.|... .....+....+..++.++|++++..
T Consensus 14 v~~RfaPsPTG~LHiG~aRtAl~n~~~Ar~~~G~~iLRieDtD~------~r~~~~~~~~I~~~l~wlGl~~de~p~~gg 87 (481)
T 2o5r_A 14 VRVRFAPSPTGFLHVGGARTALFNFLFARKEKGKFILRIEDTDL------ERSEREYEEKLMESLRWLGLLWDEGPDVGG 87 (481)
T ss_dssp CEEEECCCCCSCCBHHHHHHHHHHHHHHHHHTCEEEECBCCSSC------CSGGGHHHHHHHHHHHHHTCCCSBBTTTBC
T ss_pred EEEEECCCCCCCcCHHHHHHHHHHHHHHHHcCCeEEEEEecCCc------cccHHHHHHHHHHHHHHcCCCCCCCcccCC
Confidence 356667789999999999999989876554 4455555665531 1224466777788899999999863
Q ss_pred --EEEEccCcchh-hHHHH-H------HhccCCHHHHhchh----------hH----HHHH-------h--hhCC-----
Q 018259 153 --SVFVQSHVRAH-VELMW-L------LSSATPIGWLNKMI----------QF----KEKS-------H--KAGG----- 194 (359)
Q Consensus 153 --~i~~qS~~~~~-~eL~w-~------L~~~~~i~~L~r~~----------~~----k~~~-------~--~~~~----- 194 (359)
-.|.||+..+. .+..- + +.|.++-.+|..+. .| .++. + ..|.
T Consensus 88 ~~g~y~QS~r~~~y~~~a~~L~~~G~aY~c~ct~eel~~~r~~~~~~g~~~~yd~~~s~r~l~~~e~~~~~~~G~~~~iR 167 (481)
T 2o5r_A 88 DHGPYRQSERVEIYREHAERLVKEGKAYYVYAYPEEIEEMREKLLSEGKAPHYSQEMFEKFDTPERRREYEEKGLRPAVF 167 (481)
T ss_dssp TTCCCBGGGGHHHHHHHHHHHHHTTSEEEECCCSTTTHHHHHHHHHTTCCCCBCGGGGTTTCCHHHHHHHHHTTCCCEEE
T ss_pred CCCceeeeccHHHHHHHHHHHHHCCCeeEecCCHHHHHHHHHHHHhcCCCCCCCCchhhhcCCHHHHHHHHhcCCcceEE
Confidence 25789984322 12111 1 22444433332210 00 0000 0 0010
Q ss_pred ----C----------------Ccccccch------hhHHHhhhhh---hcccceeecccchHHHHHHHHHHHHHhhhhhC
Q 018259 195 ----E----------------NVGVALLT------YPVLMASDIL---LYQSDFVPVGEDQKQHLELTRELAERVNYLYG 245 (359)
Q Consensus 195 ----~----------------~~~~g~l~------YPvLQAADIl---~~~adivpvG~DQ~~hieLaRdia~k~n~~~g 245 (359)
. ...+|.+. ||..+-|+++ ..+.++|..|.||..|...-..+.+.++
T Consensus 168 ~k~~~~~~~~~D~~~G~~~~~~~~~~D~Vl~RsDG~ptY~~a~vvDD~~~githvirG~D~~~~t~~q~~l~~aLG---- 243 (481)
T 2o5r_A 168 FKMPRKDYVLNDVVKGEVVFKTGAIGDFVIMRSNGLPTYNFACVVDDMLMEITHVIRGDDHLSNTLRQLALYEAFE---- 243 (481)
T ss_dssp ECCCSSCEEEEETTTEEEEECTTSSCBEEEECTTSCBCHHHHHHHHHHHTTCSEEEEEGGGHHHHHHHHHHHHHTT----
T ss_pred EEcCCCceEEEecccceeEeccccCCCeEEEccCCCcchhhHHHHHHHhCCCCeEEEChhHHHhHHHHHHHHHHcC----
Confidence 0 00111111 5555555544 3578999999999999998888888776
Q ss_pred CccccccCCCCCccccCCceecCCCCcccccCCCCCCcCCCCCCCCCCeeecCC------CHHHHHHHhhhc
Q 018259 246 GRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLD------PKDVIANKIKRC 311 (359)
Q Consensus 246 ~~~~~~~~~~~~~~~~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~~s~I~L~D------~p~~I~kKI~rA 311 (359)
++.|...+. +++.+. +| +||||++. ...|.| .|+.|..-+...
T Consensus 244 --------------~~~p~~~H~---plil~~-~G-~KLSKR~g----~~~l~~~~~~G~~peal~~~l~~l 292 (481)
T 2o5r_A 244 --------------KAPPVFAHV---STILGP-DG-KKLSKRHG----ATSVEAFRDMGYLPEALVNYLALL 292 (481)
T ss_dssp --------------CCCCEEEEE---CCEECT-TS-SBCCGGGS----CCBHHHHHHHTCCHHHHHHHHHTS
T ss_pred --------------CCCCeEEEE---eeEECC-CC-CcccCcCC----cccHHHHHHCCCCHHHHHHHHHHh
Confidence 345765554 345565 67 69999974 223432 566776666553
No 44
>4g6z_A Glutamate-tRNA ligase; aminoacyl-tRNA synthetase, AARS, class 1B AARS, ATP-dependen charging, protein synthesis, structural genomics; HET: GLU; 2.05A {Burkholderia thailandensis}
Probab=98.16 E-value=2.2e-05 Score=80.36 Aligned_cols=199 Identities=19% Similarity=0.175 Sum_probs=113.0
Q ss_pred CceEEEeeCCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEeccceecCCCCHHHHHHHHHHHHHHHHHcCcCCCccEEEE
Q 018259 78 KKRIVSGVQPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFV 156 (359)
Q Consensus 78 ~~~i~sGi~PTG~lHLGnyig~i~~~~~lQ~-~~~~~i~IADlhA~t~~~~~~~l~~~~~~~~~~~lA~GlDp~kt~i~~ 156 (359)
+.+.=..=.|||.+||||+..++.+|...+. +.+.++-|-|. ++ .....+++..+..++.++|++|+. ..|.
T Consensus 25 ~v~~RFAPSPTG~lHiG~~rtal~n~l~Ar~~~G~filRieDt----D~--~R~~~~~~~~i~~dl~wlGl~~d~-~~~~ 97 (490)
T 4g6z_A 25 PVRTRFAPSPTGFIHLGNIRSALYPWAFARKMKGTFVLRIEDT----DV--ERSSQEAVDAILEGMAWLGLDYDE-GPYY 97 (490)
T ss_dssp CCEEEECCCCCSCCBHHHHHHHHHHHHHHHHTTCEEEEEECCC----CG--GGCCHHHHHHHHHHHHHTTCCCSE-EEEE
T ss_pred CceEEeCCCCCCCccHHHHHHHHHHHHHHHhcCCeEEEEeCCC----Cc--ccccHHHHHHHHHHHHHcCCCCCC-CCcc
Confidence 3444445577899999999999999977765 44555566664 21 123456778889999999999996 4799
Q ss_pred ccCcch-hhHHHH-------HHhccCCHHHHhchhhHHH-HH---------hh----------hC-----------CCCc
Q 018259 157 QSHVRA-HVELMW-------LLSSATPIGWLNKMIQFKE-KS---------HK----------AG-----------GENV 197 (359)
Q Consensus 157 qS~~~~-~~eL~w-------~L~~~~~i~~L~r~~~~k~-~~---------~~----------~~-----------~~~~ 197 (359)
||+..+ +.+..- .+.|.++-.+|+.+..-.. .. +. .+ ++.+
T Consensus 98 qS~r~~~y~~~~~~Li~~G~aY~C~ct~eel~~~r~~~~~~~~~~~Y~~~cr~~~~~~~~~~~~g~~~~~R~k~~~~~~~ 177 (490)
T 4g6z_A 98 QMQRMDRYREVLAQMQEKGLVYPCYMSTEELDALRERQRAAGEKPRYDGTWRPEPGKVLPEPPAGVAPVLRFRNPLTGTV 177 (490)
T ss_dssp GGGCHHHHHHHHHHHHHTTSEEEECC-------------------CCCCTTCCCTTCCCCCCCTTCCCEEEECCCCSSEE
T ss_pred cccCHHHHHHHHHHHHHCCCEEeCCCCHHHHHHHHHHHHhcCCCCCCCcccccCChhhhhhhhcCCCceEEEecCCCCcE
Confidence 998533 222111 1347777777754311000 00 00 00 0000
Q ss_pred c-----cccch----------------hhHHHhhhh---hhcccceeecccchHHHHHHHHHHHHHhhhhhCCccccccC
Q 018259 198 G-----VALLT----------------YPVLMASDI---LLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLG 253 (359)
Q Consensus 198 ~-----~g~l~----------------YPvLQAADI---l~~~adivpvG~DQ~~hieLaRdia~k~n~~~g~~~~~~~~ 253 (359)
. -|.+. ||..+-|.+ ...+.++|.=|.|...+--.-..+.+-|+
T Consensus 178 ~~~D~i~G~~~~~~~~~~D~Vl~R~DG~ptY~lA~vVDD~~mgIThViRG~D~l~~tprq~~l~~aLG------------ 245 (490)
T 4g6z_A 178 AWDDAVKGRVEISNEELDDLVVARPDGTPMYNFCVVVDDLDMGITHVIRGDDHVNNTPRQINILRALG------------ 245 (490)
T ss_dssp EEEETTTEEEEEEGGGCCCCEEECTTSCBCHHHHHHHHHHHTTCCEEEEEGGGGGGHHHHHHHHHHTT------------
T ss_pred EEEEeeeeeeeeccccCCCeEEEeeCCCccchhHHHHHHHhcCCCEEEeccccccChHHHHHHHHHcC------------
Confidence 0 01111 233333322 23468899999999776655555556554
Q ss_pred CCCCccccCCceecCCCCcccccCCCCCCcCCCCCCCCCCeeecC------CCHHHHHHHhhh
Q 018259 254 GRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLL------DPKDVIANKIKR 310 (359)
Q Consensus 254 ~~~~~~~~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~~s~I~L~------D~p~~I~kKI~r 310 (359)
++.|+..+. +.|.+- +| +||||.+. ...|. -.|+.|.+-+..
T Consensus 246 ------~~~P~f~Hl---pLi~~~-~g-~KLSKR~g----~~sl~~~r~~G~~peal~n~l~~ 293 (490)
T 4g6z_A 246 ------GEVPVYAHL---PTVLNE-QG-EKMSKRHG----AMSVMGYRDAGYLPEAVLNYLAR 293 (490)
T ss_dssp ------CCCCEEEEE---CCEECT-TS-SBCCTTTT----CCBHHHHHHTTCCHHHHHHHHHT
T ss_pred ------CCCCeEEEe---cceeCC-CC-CcccCCCC----CcCHHHHHHCCCCHHHHHHHHHH
Confidence 456876665 447675 66 79999973 33332 268888877766
No 45
>3aii_A Glutamyl-tRNA synthetase; amino-acyl tRNA synthetase, ligase; 1.65A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=97.98 E-value=3.7e-05 Score=79.66 Aligned_cols=176 Identities=21% Similarity=0.214 Sum_probs=94.7
Q ss_pred EEEee--CCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEeccceecCCCCHHHHHHHHHHHHHHHHHcCcCCCccEEEEc
Q 018259 81 IVSGV--QPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQ 157 (359)
Q Consensus 81 i~sGi--~PTG~lHLGnyig~i~~~~~lQ~-~~~~~i~IADlhA~t~~~~~~~l~~~~~~~~~~~lA~GlDp~kt~i~~q 157 (359)
+.+=| .|||.+||||...++.+|...+. +..+++-|-|.-. .....+++..+..++.++|++++ .++.|
T Consensus 97 v~tRFaPsPtG~LHIGhaRtal~n~l~Ar~~~G~~iLRieDtD~------~R~~~e~~~~I~edL~wLGl~wd--~~~~q 168 (553)
T 3aii_A 97 VVLRFAPNPSGPLHIGHARAAILNHEYARKYDGRLILRIEDTDP------RRVDPEAYDMIPADLEWLGVEWD--ETVIQ 168 (553)
T ss_dssp CEEEECCCSSSSCBHHHHHHHHHHHHHHHHTTCEEEEEECCCCG------GGCCTTHHHHHHHHHHHHTCCCS--EEEEG
T ss_pred eEEEeCCCCCCCccHHHHHHHHHHHHHHHHcCCEEEEEECcCCc------ccccHHHHHHHHHHHHHcCCCCC--CCccc
Confidence 44555 56699999999999988866554 4566677777621 12234667788889999999997 58999
Q ss_pred cCcchh-hHHHH-H------HhccCCHHHHhchh-----------hHHHHHh-----hhCCC--------------Cccc
Q 018259 158 SHVRAH-VELMW-L------LSSATPIGWLNKMI-----------QFKEKSH-----KAGGE--------------NVGV 199 (359)
Q Consensus 158 S~~~~~-~eL~w-~------L~~~~~i~~L~r~~-----------~~k~~~~-----~~~~~--------------~~~~ 199 (359)
|+..+. .+..- + +.|.++-.++.... ...+..+ ..|.+ +.++
T Consensus 169 Sdr~~~y~~~~~~Li~~G~AY~c~cs~eei~~~r~~g~~~~cR~~s~ee~l~~f~~m~~G~~g~~~lR~k~d~~~~n~~~ 248 (553)
T 3aii_A 169 SDRMETYYEYTEKLIERGGAYVCTCRPEEFRELKNRGEACHCRSLGFRENLQRWREMFEMKEGSAVVRVKTDLNHPNPAI 248 (553)
T ss_dssp GGGHHHHHHHHHHHHHTTSEEEECSCHHHHHHHHHTTCCCGGGGCCHHHHHHHHHHGGGSCTTSCEEEECCCTTCSSGGG
T ss_pred ccCHHHHHHHHHHHHHcCCceeCCCCHHHHHHHhhcCCCCccccCCHHHHHHHHHHHhcCCcCceEEEEEcccccCCCCC
Confidence 986432 22111 1 33666666554210 1110000 00100 0000
Q ss_pred ----------------cc--chhhHHH---hhhhhhcccceeecccchHHHHHHHHHHHHHhhhhhCCccccccCCCCCc
Q 018259 200 ----------------AL--LTYPVLM---ASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGA 258 (359)
Q Consensus 200 ----------------g~--l~YPvLQ---AADIl~~~adivpvG~DQ~~hieLaRdia~k~n~~~g~~~~~~~~~~~~~ 258 (359)
|. ..||..+ +.|.-..+.|++..|.|...+-..-.-+...++
T Consensus 249 ~Dfvl~R~~~~~hp~~Gd~~~g~PtYhfa~~vDD~~~GIThviRG~D~~~nt~~Q~~l~~alG----------------- 311 (553)
T 3aii_A 249 RDWVSMRIVEAEHPRTGTRYRVYPMMNFSVAVDDHLLGVTHVLRGKDHLANREKQEYLYRHLG----------------- 311 (553)
T ss_dssp TTCEEEEECCSCBTTTBTSCCEEECHHHHHHHHHHHTTCCEEEC-----CHHHHHHHHHHHHT-----------------
T ss_pred CCcEEEEecCCCCCccCCCceeeeeeeeeeeeeeccCCCceEeccHhhhhCHHHHHHHHHHcC-----------------
Confidence 11 1355544 345555789999999999877665555555554
Q ss_pred cccCCceecCCCCcccccCCCCCCcCCCCC
Q 018259 259 IFKVPEPLIPPAGARVMSLTDGLSKMSKSA 288 (359)
Q Consensus 259 ~~~~P~~l~~~~~~~l~sL~dg~~KMSKS~ 288 (359)
++.|...+. ++| .+ +| +|||||.
T Consensus 312 -~~~P~y~H~---~~L-~~-~g-~KLSKR~ 334 (553)
T 3aii_A 312 -WEPPEFIHY---GRL-KM-DD-VALSTSG 334 (553)
T ss_dssp -CCCCEEECC---CCB-C---------CHH
T ss_pred -CCCCeEEEe---eEE-ec-CC-ceechhh
Confidence 334766655 556 44 66 6999995
No 46
>4gri_A Glutamate--tRNA ligase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, aminoacyl-tRNA synthetase; HET: GLU; 2.60A {Borrelia burgdorferi}
Probab=97.93 E-value=3.7e-05 Score=79.04 Aligned_cols=181 Identities=20% Similarity=0.193 Sum_probs=108.4
Q ss_pred eEEEeeCCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEeccceecCCCCHHHHHHHHHHHHHHHHHcCcCCCccE-----
Q 018259 80 RIVSGVQPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKAS----- 153 (359)
Q Consensus 80 ~i~sGi~PTG~lHLGnyig~i~~~~~lQ~-~~~~~i~IADlhA~t~~~~~~~l~~~~~~~~~~~lA~GlDp~kt~----- 153 (359)
|.=.-=.|||.+||||...++.+|...+. +.++++-|-|.-. ... ..+....+..++..+||+++...
T Consensus 26 rtRFAPsPtG~LHiG~artAl~n~~~Ar~~~G~fiLRieDtD~---~R~---~~~~~~~I~~~L~wlGl~wDe~p~~~g~ 99 (512)
T 4gri_A 26 RVRYAPSPTGLQHIGGIRTALFNYFFAKSCGGKFLLRIEDTDQ---SRY---SPEAENDLYSSLKWLGISFDEGPVVGGD 99 (512)
T ss_dssp EEEECCCSSSCCBHHHHHHHHHHHHHHHHTTCEEEECBCCCCT---TSC---CHHHHHHHHHHHHHHTCCCSBBTTTBCT
T ss_pred eEEeCcCCCCcccHHHHHHHHHHHHHHHHcCCEEEEEeCcCCC---CcC---CHHHHHHHHHHHHHcCCCCCcCCccCCC
Confidence 33334467799999999999999976655 5556666777621 111 23556677788888999998632
Q ss_pred --EEEccCcchhh-HHH-HH------HhccCCHHHHhchhhHH-------------------HHHhh--hC---------
Q 018259 154 --VFVQSHVRAHV-ELM-WL------LSSATPIGWLNKMIQFK-------------------EKSHK--AG--------- 193 (359)
Q Consensus 154 --i~~qS~~~~~~-eL~-w~------L~~~~~i~~L~r~~~~k-------------------~~~~~--~~--------- 193 (359)
.|.||+..+.- +.. .+ +.|.+|-.++++...-. +.... .+
T Consensus 100 ~~py~QS~r~~~Y~~~~~~L~~~G~aY~C~ct~~el~~~r~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~R~k~ 179 (512)
T 4gri_A 100 YAPYVQSQRSAIYKQYAKYLIESGHAYYCYCSPERLERIKKIQNINKMPPGYDRHCRNLSNEEVENALIKKIKPVVRFKI 179 (512)
T ss_dssp TCCCBGGGCHHHHHHHHHHHHHTTSEEEECCCHHHHHHHHHHHHHTTCCCSCCCTTTTCCHHHHHHHHHTTCCCEEEECC
T ss_pred CCCccccchHHHHHHHHHHHHHcCCccccccchHHHHHHHHhhhccCCCCccchhhcccchhhhhhhhhhhccceeeecc
Confidence 57999854321 111 12 34788877775432210 10000 00
Q ss_pred --CCCc-----ccccch-----------------hhHHHhhhhh---hcccceeecccchHHHHHHHHHHHHHhhhhhCC
Q 018259 194 --GENV-----GVALLT-----------------YPVLMASDIL---LYQSDFVPVGEDQKQHLELTRELAERVNYLYGG 246 (359)
Q Consensus 194 --~~~~-----~~g~l~-----------------YPvLQAADIl---~~~adivpvG~DQ~~hieLaRdia~k~n~~~g~ 246 (359)
...+ -.|.+. ||..+=|-++ ..+.++|.-|.|...+--.-.-|.+-|+
T Consensus 180 ~~~~~~~~~D~v~g~i~~~~~~~~~D~vi~r~dg~PtY~fA~vVDD~~mgITHViRG~D~l~sTp~q~~l~~alg----- 254 (512)
T 4gri_A 180 PLEGDTSFDDILLGRITWANKDISPDPVILKSDGLPTYHLANVVDDYLMKITHVLRAQEWVSSGPLHVLLYKAFK----- 254 (512)
T ss_dssp CSSCEEEEEETTTEEEEEEGGGSCSSCEEECTTSCBCHHHHHHHHHHHTTCSEEEEEGGGGGGHHHHHHHHHHHT-----
T ss_pred cccCCceeeccccceEEecccccCCceEEEecCCcccccccceecccccCCceeccccccccccHHHHHHHHHcC-----
Confidence 0000 012111 2332222222 2478999999999988877777777766
Q ss_pred ccccccCCCCCccccCCceecCCCCcccccCCCCCCcCCCCCC
Q 018259 247 RKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAP 289 (359)
Q Consensus 247 ~~~~~~~~~~~~~~~~P~~l~~~~~~~l~sL~dg~~KMSKS~p 289 (359)
++.|...+. +.|.+- +| +|+||.+.
T Consensus 255 -------------~~~P~y~H~---pli~~~-~g-~kLSKR~~ 279 (512)
T 4gri_A 255 -------------WKPPIYCHL---PMVMGN-DG-QKLSKRHG 279 (512)
T ss_dssp -------------CCCCEEEEE---CCCBCT-TS-SBCCTTTS
T ss_pred -------------CCCCeEEec---chhccc-cc-cccCcccc
Confidence 556877766 447675 66 79999974
No 47
>4dlp_A Aminoacyl-tRNA synthetase, class I:aminoacyl-tRNA synthetase, class IA:methionyl-tRNA...; structural genomics; 2.65A {Brucella melitensis biovar abortus 230ORGANISM_TAXID}
Probab=97.56 E-value=0.00037 Score=71.45 Aligned_cols=79 Identities=19% Similarity=0.247 Sum_probs=48.8
Q ss_pred ceEEEee--CCCCcchhhhHHHHHH--HHHHHhc--cCcEEE-EEeccceecC-------CCCHHHH-HHHHHHHHHHHH
Q 018259 79 KRIVSGV--QPTGSIHLGNYLGAIK--NWIALQN--SYETLF-FIVDLHAITL-------PYDTQQL-SKATRETAAIYL 143 (359)
Q Consensus 79 ~~i~sGi--~PTG~lHLGnyig~i~--~~~~lQ~--~~~~~i-~IADlhA~t~-------~~~~~~l-~~~~~~~~~~~l 143 (359)
...++|- -|||.+||||..+++. -+.++++ |++|.+ .-.|.|..-. ..+++++ ++....+.+++.
T Consensus 26 ~~~i~~p~pypng~lHiGH~r~~v~~D~laR~lr~~G~~V~~~~g~dd~g~ki~~~a~~~g~~~~~~~~~~~~~~~~~l~ 105 (536)
T 4dlp_A 26 KYYITTAIAYPNGKPHIGHAYELIATDAMARFQRLNGMDVYFLTGTDEHGIKMLQSARKEGITPRDLADRNTSAFRRMAE 105 (536)
T ss_dssp EEEEEECCBCCSSCCCHHHHHHHHHHHHHHHHHHHTTCEEEEEEEECCCSHHHHHHHHHHTSCHHHHHHHHHHHHHHHHH
T ss_pred CEEEeCCCCCCCCCcCcchhHHHHHHHHHHHHHHhcCCcEEEecCcCCcchHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 3444554 4569999999887663 2445544 788754 4556655421 2244443 355667888899
Q ss_pred HcCcCCCccEEEEccC
Q 018259 144 ACGIDNSKASVFVQSH 159 (359)
Q Consensus 144 A~GlDp~kt~i~~qS~ 159 (359)
++|++++ .++.-++
T Consensus 106 ~lgi~~d--~~~~t~~ 119 (536)
T 4dlp_A 106 VLNSSND--DYIRTSE 119 (536)
T ss_dssp HTTCCCS--EEEETTS
T ss_pred HcCCCCC--cceeCCC
Confidence 9999988 3444443
No 48
>2d5b_A Methionyl-tRNA synthetase; rossmann fold, class 1A AARS, isomerase, structural genomics, NPPSFA; 1.80A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 PDB: 1woy_A 1a8h_A 2d54_A
Probab=97.53 E-value=0.00051 Score=69.50 Aligned_cols=79 Identities=16% Similarity=0.190 Sum_probs=48.6
Q ss_pred ceEEEeeCC--CCcchhhhHHHHHHH--HHHHhc--cCcEEEE-EeccceecC-------CCCHHH-HHHHHHHHHHHHH
Q 018259 79 KRIVSGVQP--TGSIHLGNYLGAIKN--WIALQN--SYETLFF-IVDLHAITL-------PYDTQQ-LSKATRETAAIYL 143 (359)
Q Consensus 79 ~~i~sGi~P--TG~lHLGnyig~i~~--~~~lQ~--~~~~~i~-IADlhA~t~-------~~~~~~-l~~~~~~~~~~~l 143 (359)
..+++|--| +|.+||||....+.. +.++++ |++|.+. =.|-|..-. ..++.+ .+++...+.+++.
T Consensus 4 ~~~i~~p~py~~g~lHiGH~r~~~~~D~~~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~~~ 83 (500)
T 2d5b_A 4 VFYVTTPIYYVNAEPHLGHAYTTVVADFLARWHRLDGYRTFFLTGTDEHGETVYRAAQAAGEDPKAFVDRVSGRFKRAWD 83 (500)
T ss_dssp EEEEECCCEETTSCCCHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEECCSHHHHHHHHHHTSCHHHHHHHHHHHHHHHHH
T ss_pred cEEEecCCCCCCCCcchhhHHHHHHHHHHHHHHHcCCCceeeecccCCchHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 345566555 899999999876632 445543 7887653 234333211 123333 3345667888999
Q ss_pred HcCcCCCccEEEEccC
Q 018259 144 ACGIDNSKASVFVQSH 159 (359)
Q Consensus 144 A~GlDp~kt~i~~qS~ 159 (359)
++|++++ .++..++
T Consensus 84 ~lgi~~d--~~~~t~~ 97 (500)
T 2d5b_A 84 LLGIAYD--DFIRTTE 97 (500)
T ss_dssp HTTCCCS--EEEETTS
T ss_pred HhCCcCC--CCcccCC
Confidence 9999988 3556665
No 49
>1qtq_A GLNRS, protein (glutaminyl-tRNA synthetase); glutamine, trnaGln, E. coli, complex, ligase/RNA complex; HET: QSI; 2.25A {Escherichia coli} SCOP: b.53.1.2 c.26.1.1 PDB: 1gsg_P* 1gts_A* 1gtr_A* 1zjw_A* 1o0b_A* 1o0c_A* 1qru_A* 1qrs_A* 1qrt_A* 1euy_A* 1euq_A* 1exd_A* 2rd2_A* 2re8_A* 1nyl_A
Probab=97.52 E-value=0.00046 Score=71.59 Aligned_cols=95 Identities=13% Similarity=-0.006 Sum_probs=64.2
Q ss_pred ceEEEeeCCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEeccceecCCCCHHHHHHHHHHHHHHHHHcCcCCCccEEEEc
Q 018259 79 KRIVSGVQPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQ 157 (359)
Q Consensus 79 ~~i~sGi~PTG~lHLGnyig~i~~~~~lQ~-~~~~~i~IADlhA~t~~~~~~~l~~~~~~~~~~~lA~GlDp~kt~i~~q 157 (359)
.+.-.+=.|||.+||||...++.+|...+. +..+++-|-|.-. .....+++..+..++.++|++++. .++.|
T Consensus 27 v~tRFaPSPtG~LHIGhaRtal~n~l~Ar~~gG~fiLRieDTD~------~R~~~e~~~~I~edL~wLGl~wde-~~~~q 99 (553)
T 1qtq_A 27 VHTRFPPEPNGYLHIGHAKSICLNFGIAQDYKGQCNLRFDDTNP------VKEDIEYVESIKNDVEWLGFHWSG-NVRYS 99 (553)
T ss_dssp CEEEECCCTTSCCBHHHHHHHHHHHHHHHHTTCEEEEEECCCCG------GGCCHHHHHHHHHHHHHTTCCCSS-SCEEG
T ss_pred eEEEeCCCCCCCccHHHHHHHHHHHHHHHHcCCEEEEEECCCCc------hhcCHHHHHHHHHHHHHcCCCCCC-CCeeh
Confidence 344456677899999999999988866654 5566777777621 123446777888999999999964 47999
Q ss_pred cCcch-hhHHHH-H------HhccCCHHHHh
Q 018259 158 SHVRA-HVELMW-L------LSSATPIGWLN 180 (359)
Q Consensus 158 S~~~~-~~eL~w-~------L~~~~~i~~L~ 180 (359)
|+..+ +.+..- + +.|..+-.+|.
T Consensus 100 Ser~~~~~~~a~~Li~~G~AY~c~ct~eel~ 130 (553)
T 1qtq_A 100 SDYFDQLHAYAIELINKGLAYVDELTPEQIR 130 (553)
T ss_dssp GGGHHHHHHHHHHHHHTTSEEEECCCHHHHH
T ss_pred cccHHHHHHHHHHHHHCCCceecCCCHHHHH
Confidence 98643 222221 1 23666666553
No 50
>2hz7_A Glutaminyl-tRNA synthetase; rossmann fold, GLNRS core, class I aminoacyl-tRNA synthetase, ligase; 2.30A {Deinococcus radiodurans}
Probab=97.48 E-value=0.00072 Score=73.18 Aligned_cols=75 Identities=15% Similarity=0.113 Sum_probs=55.8
Q ss_pred eEEEeeCCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEeccceecCCCCHHHHHHHHHHHHHHHHHcCcCCCccEEEEcc
Q 018259 80 RIVSGVQPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQS 158 (359)
Q Consensus 80 ~i~sGi~PTG~lHLGnyig~i~~~~~lQ~-~~~~~i~IADlhA~t~~~~~~~l~~~~~~~~~~~lA~GlDp~kt~i~~qS 158 (359)
+.=.+=.|||.+||||...++.+|...+. +..+++-|-|. ++. ....+++..+..++.++||+++. .++.||
T Consensus 68 ~tRFaPSPtG~LHIGhARtAL~n~l~Ar~~gG~fiLRIEDT----D~~--R~~~e~~~~IledL~wLGl~wde-~~~~qS 140 (851)
T 2hz7_A 68 VTRFPPDPSGYAHLGHVFASLLDFNTARQYGGQFNLRMDDT----NPE--LARQEYVDSIADDLKWLGLDWGE-HFYYAS 140 (851)
T ss_dssp EEEECCCSSSCCBHHHHHHHHHHHHHHHHTTCEEEEEECCC----CTT--TCCHHHHHHHHHHHHHHTCCCTT-CEEEGG
T ss_pred EEEeCCCCCCCccHHHHHHHHHHHHHHHHcCCEEEEEECcC----Ccc--cccHHHHHHHHHHHHHcCCCCCC-CcccHh
Confidence 34446677899999999999988876654 55667778776 211 23456778888999999999964 589999
Q ss_pred Ccc
Q 018259 159 HVR 161 (359)
Q Consensus 159 ~~~ 161 (359)
+..
T Consensus 141 er~ 143 (851)
T 2hz7_A 141 DYF 143 (851)
T ss_dssp GGH
T ss_pred hhH
Confidence 864
No 51
>2csx_A Methionyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase/RNA complex; 2.70A {Aquifex aeolicus} PDB: 2ct8_A*
Probab=97.45 E-value=0.00045 Score=69.97 Aligned_cols=79 Identities=14% Similarity=0.221 Sum_probs=49.8
Q ss_pred ceEEEee--CCCCcchhhhHHHHHHH--HHHHhc--cCcEEEE-EeccceecC-------CCCHHH-HHHHHHHHHHHHH
Q 018259 79 KRIVSGV--QPTGSIHLGNYLGAIKN--WIALQN--SYETLFF-IVDLHAITL-------PYDTQQ-LSKATRETAAIYL 143 (359)
Q Consensus 79 ~~i~sGi--~PTG~lHLGnyig~i~~--~~~lQ~--~~~~~i~-IADlhA~t~-------~~~~~~-l~~~~~~~~~~~l 143 (359)
..+++|- -|||.+||||....+.. +.++++ |++|.+. =.|-|..-. ..++++ ..++...+.+++.
T Consensus 6 ~~~i~~p~py~ng~lHiGH~~~~~~~D~~~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~~~ 85 (497)
T 2csx_A 6 KFYVTTPIYYVNDVPHLGHAYTTIAADTIARYYRLRDYDVFFLTGTDEHGLKIQKKAEELGISPKELVDRNAERFKKLWE 85 (497)
T ss_dssp EEEEEEEEEETTSCCCHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEECCSHHHHTHHHHSSSCHHHHHHHHHHHHHHHHH
T ss_pred cEEEecCCCCCCCccchhhHHHHHHHHHHHHHHHhcCCceeeecccCCCcHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 3445554 46799999998876633 445553 7777543 334443321 123433 4466778888999
Q ss_pred HcCcCCCccEEEEccC
Q 018259 144 ACGIDNSKASVFVQSH 159 (359)
Q Consensus 144 A~GlDp~kt~i~~qS~ 159 (359)
++|++++ .++..++
T Consensus 86 ~lgi~~d--~~~~t~~ 99 (497)
T 2csx_A 86 FLKIEYT--KFIRTTD 99 (497)
T ss_dssp HTTCCCS--EEEETTS
T ss_pred HhCCcCC--CCccCCC
Confidence 9999988 3566776
No 52
>1iq0_A Arginyl-tRNA synthetase; riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; 2.30A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 d.67.2.1
Probab=96.77 E-value=0.00074 Score=70.39 Aligned_cols=41 Identities=20% Similarity=0.272 Sum_probs=30.0
Q ss_pred ceEEEeeCCCCcchhhhHHHHH--HHHHHHhc--cCcEEE--EEecc
Q 018259 79 KRIVSGVQPTGSIHLGNYLGAI--KNWIALQN--SYETLF--FIVDL 119 (359)
Q Consensus 79 ~~i~sGi~PTG~lHLGnyig~i--~~~~~lQ~--~~~~~i--~IADl 119 (359)
..=|+|--|+|.+||||..+++ .-+.++.+ |++|+. -|.||
T Consensus 106 ~ve~~spn~~~~~HiGH~R~~iigD~laR~l~~~G~~V~~~~~i~D~ 152 (592)
T 1iq0_A 106 LVEHTSVNPNKELHVGHLRNIALGDAIARILAYAGREVLVLNYIDDT 152 (592)
T ss_dssp EEECCCCCTTSCCBHHHHHHHHHHHHHHHHHHHTTEEEEEEEEECTT
T ss_pred EEEeeCCCCCCCCcchHHHHHHHHHHHHHHHHHcCCceEEEeccCCc
Confidence 4456788899999999988766 33556655 788764 57777
No 53
>3tqo_A Cysteinyl-tRNA synthetase; protein synthesis, ligase; 2.30A {Coxiella burnetii}
Probab=96.16 E-value=0.015 Score=59.09 Aligned_cols=72 Identities=13% Similarity=0.002 Sum_probs=43.9
Q ss_pred eEEEeeCCCCcchhhhHHHHHHH--HHHHhc--cCcEEEE-Eecccee-c-C-----CCCHHH-HHHHHHHHHHHHHHcC
Q 018259 80 RIVSGVQPTGSIHLGNYLGAIKN--WIALQN--SYETLFF-IVDLHAI-T-L-----PYDTQQ-LSKATRETAAIYLACG 146 (359)
Q Consensus 80 ~i~sGi~PTG~lHLGnyig~i~~--~~~lQ~--~~~~~i~-IADlhA~-t-~-----~~~~~~-l~~~~~~~~~~~lA~G 146 (359)
..++|--|.|.+||||....+.. +.++++ |++|.+. --|.|.- + . ..++.+ ..+++..+.+++.++|
T Consensus 28 ~YvcGPtvy~~~HIGHaR~~v~~Dvl~R~lr~~Gy~V~~v~n~dD~ddKIi~~A~~~g~~~~e~a~~~~~~f~~d~~~Lg 107 (462)
T 3tqo_A 28 LYVCGMTVYDYMHIGHGRSWIIFDMVVRYLRMRGYEVTFVRNITDIDDKIIKRAGENKESPAALAERFIQILHEDEKALR 107 (462)
T ss_dssp EEECCCBTTSCCBHHHHHHHHHHHHHHHHHHHTTCEEEEEECBBCCCHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHT
T ss_pred EEeCCCcCCCCCchhhhHHHHHHHHHHHHHHHcCCceEEecCcCCCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcC
Confidence 33468888899999998876522 333332 7887553 3333321 1 0 123333 3455678888999999
Q ss_pred cCCCc
Q 018259 147 IDNSK 151 (359)
Q Consensus 147 lDp~k 151 (359)
+.++.
T Consensus 108 I~~d~ 112 (462)
T 3tqo_A 108 VLSPD 112 (462)
T ss_dssp CCCCS
T ss_pred CCCCc
Confidence 98754
No 54
>2zue_A Arginyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding, protein biosynthesis, ligase/RNA complex; HET: ANP; 2.00A {Pyrococcus horikoshii} PDB: 2zuf_A
Probab=95.61 E-value=0.01 Score=62.37 Aligned_cols=40 Identities=30% Similarity=0.434 Sum_probs=29.0
Q ss_pred eEEEeeCCCCcchhhhHHHHH--HHHHHHhc--cCcEEE--EEecc
Q 018259 80 RIVSGVQPTGSIHLGNYLGAI--KNWIALQN--SYETLF--FIVDL 119 (359)
Q Consensus 80 ~i~sGi~PTG~lHLGnyig~i--~~~~~lQ~--~~~~~i--~IADl 119 (359)
.=|+|--|+|.+|+||..+++ .-+.++.+ |++|+. -|.||
T Consensus 123 ve~~spN~~~~~HiGH~Rs~iigD~laR~l~~~G~~V~~~~~i~D~ 168 (629)
T 2zue_A 123 VEHTSVNPTKPLHMGHARNAILGDVMARILRFLGYEVEVQNYIDDL 168 (629)
T ss_dssp EECCCCCTTSCCBHHHHHHHHHHHHHHHHHHHTTCEEEEEEEECTT
T ss_pred EEeeCCCCCCCCccchhHHHHHHHHHHHHHHHcCCCceEEecccch
Confidence 336788999999999988766 23445544 788864 57887
No 55
>3u1f_A Methionyl-tRNA synthetase; aminoacyl-tRNA synthetase, AARS, metrs, parasite, protein-IN complex, rossmann-fold, translation; HET: 392; 2.20A {Trypanosoma brucei} PDB: 3u1e_A* 3u1g_A* 3u20_A* 4eg1_A 4eg3_A* 4eg6_A* 4eg8_A* 4eg5_A* 3tun_A* 3u1z_A* 4eg4_A* 4eg7_A* 4ega_A*
Probab=95.32 E-value=0.068 Score=54.36 Aligned_cols=78 Identities=8% Similarity=-0.016 Sum_probs=50.4
Q ss_pred CCCCCceEEEee-CCCCcchhhhHHHHHH--HHHHHhc--cCcEEEEEe-ccceec--C-----CCCHHH-HHHHHHHHH
Q 018259 74 SSSVKKRIVSGV-QPTGSIHLGNYLGAIK--NWIALQN--SYETLFFIV-DLHAIT--L-----PYDTQQ-LSKATRETA 139 (359)
Q Consensus 74 ~~~~~~~i~sGi-~PTG~lHLGnyig~i~--~~~~lQ~--~~~~~i~IA-DlhA~t--~-----~~~~~~-l~~~~~~~~ 139 (359)
+..+++.|-|.+ -++|.+||||.++.+. -+++.++ |++|++.-+ |-|.+- . ..++++ .++++..+.
T Consensus 6 ~~~k~f~Ittp~pY~nG~lHiGHa~~~~~~Dii~Ry~r~~G~~v~~v~G~D~hG~~ie~~a~k~g~~~~e~~~~~~~~~~ 85 (542)
T 3u1f_A 6 KVEKVFFVTSPIYYVNAAPHIGHVYSTLITDVIGRYHRVKGERVFALTGTDEHGQKVAEAAKQKQVSPYDFTTAVAGEFK 85 (542)
T ss_dssp -CCCCEEEEEEEEECSSCCCHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEECCSHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred CCCCCEEEeCCCCCCCCchhhHHHHHHHHHHHHHHHHHhcCCCccccCccCcChHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 333455666663 7899999999987653 2444443 889876544 444432 1 224443 456677888
Q ss_pred HHHHHcCcCCCc
Q 018259 140 AIYLACGIDNSK 151 (359)
Q Consensus 140 ~~~lA~GlDp~k 151 (359)
.++.++|++.|.
T Consensus 86 ~~~~~lgi~~D~ 97 (542)
T 3u1f_A 86 KCFEQMDYSIDY 97 (542)
T ss_dssp HHHHHHTCCCSE
T ss_pred HHHHHhCCccCc
Confidence 899999999874
No 56
>3h99_A Methionyl-tRNA synthetase; rossmann fold, aminoacyl-tRNA synthetase, ATP-binding, ligas binding, nucleotide-binding, protein biosynthesis; HET: CIT; 1.40A {Escherichia coli} PDB: 3h97_A* 3h9b_A* 1f4l_A 3h9c_A* 1pfv_A* 1pfu_A 1p7p_A* 1pfw_A* 1pfy_A* 1pg0_A* 1pg2_A* 1qqt_A 1mea_A 1med_A
Probab=94.09 E-value=0.21 Score=51.28 Aligned_cols=79 Identities=23% Similarity=0.364 Sum_probs=49.5
Q ss_pred CceEEEe-eCCCCcchhhhHHHHHHH--HHHHhc--cCcEEE-EEeccceecC-------CCCHHH-HHHHHHHHHHHHH
Q 018259 78 KKRIVSG-VQPTGSIHLGNYLGAIKN--WIALQN--SYETLF-FIVDLHAITL-------PYDTQQ-LSKATRETAAIYL 143 (359)
Q Consensus 78 ~~~i~sG-i~PTG~lHLGnyig~i~~--~~~lQ~--~~~~~i-~IADlhA~t~-------~~~~~~-l~~~~~~~~~~~l 143 (359)
+..|.++ .-|||.+||||....+.. +.++++ |++|.+ .-.|.|..-. ..++++ .++....+..++.
T Consensus 19 ~~~v~~~~py~ng~lHiGH~r~~v~~D~laR~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~~~ 98 (560)
T 3h99_A 19 KILVTCASPYANGSIHLGHMLEHIQADVWVRYQRMRGHEVNFICADDAHGTPIMLKAQQLGITPEQMIGEMSQEHQTDFA 98 (560)
T ss_dssp EEEEEECCCBTTSCCBHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEBCCSHHHHHHHHHHTSCHHHHHHHHHHHHHHHHH
T ss_pred cEEEeCCCCCCCCCcchhhHHHHHHHHHHHHHHHHcCCeEEEeeeecCcCcHHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Confidence 4455455 466699999999876632 444443 788864 4555554421 224444 3455667888999
Q ss_pred HcCcCCCccEEEEcc
Q 018259 144 ACGIDNSKASVFVQS 158 (359)
Q Consensus 144 A~GlDp~kt~i~~qS 158 (359)
++|++++. ++.-+
T Consensus 99 ~lgi~~d~--~~~t~ 111 (560)
T 3h99_A 99 GFNISYDN--YHSTH 111 (560)
T ss_dssp HTTCCCSE--EEESS
T ss_pred HcCCCCCC--ceeCC
Confidence 99999884 44444
No 57
>1irx_A Lysyl-tRNA synthetase; beta sandwitch, zinc-binding structure, rossmann fold, alpha-helix CAGE; 2.60A {Pyrococcus horikoshii} SCOP: a.97.1.2 c.26.1.1
Probab=93.86 E-value=0.079 Score=54.15 Aligned_cols=79 Identities=22% Similarity=0.289 Sum_probs=50.7
Q ss_pred CceEEEeeCCCCcchhhhHHHHHHHHH--HHh--ccCcEE-EEEeccceecC--CC------------C-----------
Q 018259 78 KKRIVSGVQPTGSIHLGNYLGAIKNWI--ALQ--NSYETL-FFIVDLHAITL--PY------------D----------- 127 (359)
Q Consensus 78 ~~~i~sGi~PTG~lHLGnyig~i~~~~--~lQ--~~~~~~-i~IADlhA~t~--~~------------~----------- 127 (359)
..++.+|--|||.+||||...++..++ +.. .|+++. ++-.|.|.-.. |. +
T Consensus 21 ~yv~~tgPsPtG~lHIGhaR~al~~D~laR~l~~~g~~v~fi~~idD~d~~rkip~~~~~a~~~~~G~~~~~~p~p~~~~ 100 (523)
T 1irx_A 21 KYVVESGITPSGYVHVGNFRELFTAYIVGHALRDKGYEVRHIHMWDDYDRFRKVPRNVPQEWKDYLGMPISEVPDPWGCH 100 (523)
T ss_dssp EEEEEEEECCSSCCCHHHHHHHHHHHHHHHHHHTTTCEEEEEEEECTTSBCCCCCSSSCGGGGGGTTSBGGGSCCTTSSS
T ss_pred eEEECCCCCCCCCcccCCcHHHHHHHHHHHHHHHcCCCEEEEEeeCCcchhhhhhhHHHHHHHHHcCCCcccCCcchhhH
Confidence 356667999999999999998876532 222 267763 44445554111 00 0
Q ss_pred HHHHHHHHHHHHHHHHHcCcCCCccEEEEccC
Q 018259 128 TQQLSKATRETAAIYLACGIDNSKASVFVQSH 159 (359)
Q Consensus 128 ~~~l~~~~~~~~~~~lA~GlDp~kt~i~~qS~ 159 (359)
.+-..++...+..++.++||+++ +|.||+
T Consensus 101 ~~~~~~~~~~~~~~l~~Lgi~~D---~~~~se 129 (523)
T 1irx_A 101 ESYAEHFMRKFEEEVEKLGIEVD---LLYASE 129 (523)
T ss_dssp SSHHHHHHHHHHHHHHTTTCCCE---EEEHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCCce---EEechh
Confidence 11234567788888999999987 358997
No 58
>3kfl_A Methionyl-tRNA synthetase; parasite, aminoacyl-tRNA synthetase, tRNA ligase metrs, methionine, translation, ATP-binding; HET: ME8; 2.00A {Leishmania major}
Probab=93.83 E-value=0.33 Score=49.98 Aligned_cols=87 Identities=9% Similarity=0.017 Sum_probs=52.0
Q ss_pred CCCCCCCCceEEEe-eCCCCcchhhhHHHHHH--HHHHHhc--cCcEE-EEEeccceecC-------CCCHHH-HHHHHH
Q 018259 71 VASSSSVKKRIVSG-VQPTGSIHLGNYLGAIK--NWIALQN--SYETL-FFIVDLHAITL-------PYDTQQ-LSKATR 136 (359)
Q Consensus 71 ~~~~~~~~~~i~sG-i~PTG~lHLGnyig~i~--~~~~lQ~--~~~~~-i~IADlhA~t~-------~~~~~~-l~~~~~ 136 (359)
.+.+..++..|.+. .-|+|.+||||..+.+. -+.++++ |++|+ +.-.|.|..-. ..++++ +.+...
T Consensus 20 ~~~~~~~~~~i~~~~py~ng~lHiGH~r~~v~~D~laR~~r~~G~~V~~~~g~dd~G~ki~~~a~~~g~~p~~~~~~~~~ 99 (564)
T 3kfl_A 20 GSMKKQKVFFATTPIYYVNASPHIGHVYSTLIVDVLGRYHRVKGEEVFVMTGTDEHGQKVAEAAAKQGVSPMDFTTSVSS 99 (564)
T ss_dssp ----CCCCEEEEEEEEECSSCCCHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEECCSHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred ccccCCCCEEEeCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCcEEEecCcCCCCcHHHHHHHHcCCCHHHHHHHHHH
Confidence 33333344444333 35889999999887663 3556654 88885 45566665421 224444 445566
Q ss_pred HHHHHHHHcCcCCCccEEEEccC
Q 018259 137 ETAAIYLACGIDNSKASVFVQSH 159 (359)
Q Consensus 137 ~~~~~~lA~GlDp~kt~i~~qS~ 159 (359)
.+.+++.++|++.+. ++.-++
T Consensus 100 ~~~~~~~~lgi~~D~--~~~t~~ 120 (564)
T 3kfl_A 100 EFKQCFQEMNYDMNY--FIRTTN 120 (564)
T ss_dssp HHHHHHHHTTCCCSE--EEETTS
T ss_pred HHHHHHHHcCCCCCc--cccCCC
Confidence 788889999999883 444443
No 59
>1rqg_A Methionyl-tRNA synthetase; translation, dimerization, ligase; 2.90A {Pyrococcus abyssi} SCOP: a.27.1.1 c.26.1.1 g.41.1.1
Probab=92.55 E-value=0.36 Score=51.34 Aligned_cols=74 Identities=14% Similarity=0.254 Sum_probs=50.3
Q ss_pred CceEEEee-CCCCcchhhhHHH-HH--HHHHHHhc--cCcEEEE-EeccceecC-------CCCHHH-HHHHHHHHHHHH
Q 018259 78 KKRIVSGV-QPTGSIHLGNYLG-AI--KNWIALQN--SYETLFF-IVDLHAITL-------PYDTQQ-LSKATRETAAIY 142 (359)
Q Consensus 78 ~~~i~sGi-~PTG~lHLGnyig-~i--~~~~~lQ~--~~~~~i~-IADlhA~t~-------~~~~~~-l~~~~~~~~~~~ 142 (359)
+..|.+++ -|+|.+||||..+ .+ .-+.++++ |++|++. --|-|.+-. ..++++ ..++...+..++
T Consensus 3 ~~~itt~~Py~nG~lHiGHa~~~~i~~DiiaRy~rm~G~~V~~v~G~D~hG~pie~~A~k~G~~p~e~~~~~~~~~~~~~ 82 (722)
T 1rqg_A 3 RYMVTSALPYANGPIHAGHLAGAYLPADIFVRYLRLKGEDVVFICGTDEHGTPISFRALKEGRSPREIVDEFHEQIKITF 82 (722)
T ss_dssp EEEEEECCCBTTSCCBHHHHHHHTHHHHHHHHHHHHTTCEEEEEEEEBCCSHHHHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred CEEEecCCCCCCCchhhchhhccHHHHHHHHHHHHhcCCceEecceeCCCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 45666766 7889999999987 44 23566655 8888654 455565421 234544 445667788899
Q ss_pred HHcCcCCCc
Q 018259 143 LACGIDNSK 151 (359)
Q Consensus 143 lA~GlDp~k 151 (359)
.++|++++.
T Consensus 83 ~~lgis~D~ 91 (722)
T 1rqg_A 83 QRAKISFDF 91 (722)
T ss_dssp HHHTCCCSE
T ss_pred HHhCCCCCC
Confidence 999999884
No 60
>2x1l_A Methionyl-tRNA synthetase; nucleotide-binding, protein biosynthesis, ligase, aminoacyl- synthetase; HET: ADN CXS; 2.30A {Mycobacterium smegmatis} PDB: 2x1m_A*
Probab=89.41 E-value=1.3 Score=44.81 Aligned_cols=72 Identities=14% Similarity=0.218 Sum_probs=45.2
Q ss_pred CCCCcchhhhHHHHHH--HHHHHhc--cCcEEEE-EeccceecC-------CCCHHH-HHHHHHHHHHHHHHcCcCCCcc
Q 018259 86 QPTGSIHLGNYLGAIK--NWIALQN--SYETLFF-IVDLHAITL-------PYDTQQ-LSKATRETAAIYLACGIDNSKA 152 (359)
Q Consensus 86 ~PTG~lHLGnyig~i~--~~~~lQ~--~~~~~i~-IADlhA~t~-------~~~~~~-l~~~~~~~~~~~lA~GlDp~kt 152 (359)
-|+|.+||||....+. -+.++++ |++|.++ -.|-|..-. ..++.+ .+++...+.+++.++|++++
T Consensus 22 ~~ng~lHiGHa~~~i~~D~l~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~~~~lgi~~d-- 99 (524)
T 2x1l_A 22 YPNGVPHIGHAYEYIATDAIARFKRLDGYDVRYLTGTDVHGQKMAETAAKEGIPAAELARRNSDVFQRLQEKLNISFD-- 99 (524)
T ss_dssp CCSSCCCHHHHHHHHHHHHHHHHHHHTTCEEEEEEEECCCSHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHTTCCCS--
T ss_pred CCCCCcccchhHHHHHHHHHHHHHHhcCCceeeeCCcCcccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCcCC--
Confidence 4679999999887663 2445543 7887653 334443311 123433 34566778889999999887
Q ss_pred EEEEccC
Q 018259 153 SVFVQSH 159 (359)
Q Consensus 153 ~i~~qS~ 159 (359)
.++..++
T Consensus 100 ~~~~t~~ 106 (524)
T 2x1l_A 100 RFIRTSD 106 (524)
T ss_dssp EEEETTS
T ss_pred CCeecCC
Confidence 4556565
No 61
>3u1f_A Methionyl-tRNA synthetase; aminoacyl-tRNA synthetase, AARS, metrs, parasite, protein-IN complex, rossmann-fold, translation; HET: 392; 2.20A {Trypanosoma brucei} PDB: 3u1e_A* 3u1g_A* 3u20_A* 4eg1_A 4eg3_A* 4eg6_A* 4eg8_A* 4eg5_A* 3tun_A* 3u1z_A* 4eg4_A* 4eg7_A* 4ega_A*
Probab=87.54 E-value=0.54 Score=47.66 Aligned_cols=15 Identities=20% Similarity=0.290 Sum_probs=12.2
Q ss_pred ccceeecccchHHHH
Q 018259 216 QSDFVPVGEDQKQHL 230 (359)
Q Consensus 216 ~adivpvG~DQ~~hi 230 (359)
-+|+...|.||..++
T Consensus 278 p~d~~~~G~D~~~fh 292 (542)
T 3u1f_A 278 PADVHVIGKDILKFH 292 (542)
T ss_dssp SCSEEEEEGGGHHHH
T ss_pred cceEEEecccccccc
Confidence 368999999997754
No 62
>3kfl_A Methionyl-tRNA synthetase; parasite, aminoacyl-tRNA synthetase, tRNA ligase metrs, methionine, translation, ATP-binding; HET: ME8; 2.00A {Leishmania major}
Probab=86.76 E-value=0.52 Score=48.52 Aligned_cols=68 Identities=21% Similarity=0.300 Sum_probs=38.4
Q ss_pred cccceeecccchHHHHHH---HHHHHHHhhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCcCCCCCCCC
Q 018259 215 YQSDFVPVGEDQKQHLEL---TRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSD 291 (359)
Q Consensus 215 ~~adivpvG~DQ~~hieL---aRdia~k~n~~~g~~~~~~~~~~~~~~~~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~ 291 (359)
+.+|+...|.||..++.+ ++-.+ + | ++.|..++.. ..+ . .+| +|||||.
T Consensus 293 wp~dv~~~GkDii~FH~~~wpa~L~a--~----g--------------~~~~~~v~~h--g~v-~-~~G-~KMSKS~--- 344 (564)
T 3kfl_A 293 WPADVHVVGKDILKFHAIYWPAFLMS--A----E--------------LPLPERLVSH--GWW-T-KDH-KKISKSL--- 344 (564)
T ss_dssp CSCSEEEEEGGGHHHHHTHHHHHHHH--T----T--------------CCCCSCEEEE--CCE-E-ETT-EECCTTT---
T ss_pred CccceEEEeecccchHHHHHHHHHHh--C----C--------------CCCCcEEEEc--ccE-e-eCC-ccccccC---
Confidence 357899999999884332 22222 1 2 2234443321 334 3 367 6999997
Q ss_pred CCeeecCC-----CHHHHHHHhhh
Q 018259 292 QSRINLLD-----PKDVIANKIKR 310 (359)
Q Consensus 292 ~s~I~L~D-----~p~~I~kKI~r 310 (359)
+|.|.+.| .++.++--+.+
T Consensus 345 GNvV~p~d~i~~~G~DalR~~ll~ 368 (564)
T 3kfl_A 345 GNAFDPVEKAKEFGIDALKYFLMR 368 (564)
T ss_dssp TCCCCHHHHHHHHCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHcCcHHHHHHHHH
Confidence 68886544 44444444444
No 63
>2x1l_A Methionyl-tRNA synthetase; nucleotide-binding, protein biosynthesis, ligase, aminoacyl- synthetase; HET: ADN CXS; 2.30A {Mycobacterium smegmatis} PDB: 2x1m_A*
Probab=85.34 E-value=0.24 Score=50.14 Aligned_cols=15 Identities=20% Similarity=0.452 Sum_probs=12.4
Q ss_pred cccceeecccchHHH
Q 018259 215 YQSDFVPVGEDQKQH 229 (359)
Q Consensus 215 ~~adivpvG~DQ~~h 229 (359)
+.+|+..+|.||...
T Consensus 264 ~p~di~~~G~D~~~f 278 (524)
T 2x1l_A 264 WPADLHMIGKDIIRF 278 (524)
T ss_dssp CSCSEEEEEGGGHHH
T ss_pred CCCeEEEEeechhHh
Confidence 358999999999853
No 64
>4arc_A Leucine--tRNA ligase; ligase-RNA complex, nucleotide-binding, protein biosynthesis I aminoacyl-tRNA synthetase, ATP-binding; 2.00A {Escherichia coli} PDB: 4aq7_A 4ari_A* 4as1_A*
Probab=84.74 E-value=2.2 Score=46.50 Aligned_cols=73 Identities=14% Similarity=0.060 Sum_probs=48.0
Q ss_pred CceEEEee-CCCCcchhhhHHHHHH--HHHHHhc--cCcEEE-EEeccceecC-------CCCHHH-HHHHHHHHHHHHH
Q 018259 78 KKRIVSGV-QPTGSIHLGNYLGAIK--NWIALQN--SYETLF-FIVDLHAITL-------PYDTQQ-LSKATRETAAIYL 143 (359)
Q Consensus 78 ~~~i~sGi-~PTG~lHLGnyig~i~--~~~~lQ~--~~~~~i-~IADlhA~t~-------~~~~~~-l~~~~~~~~~~~l 143 (359)
+..+++++ -|||.+||||....+. -+.++++ |+++.+ .--|-|.+-. ..++.+ ..+++..+..++.
T Consensus 54 ~~~v~~~~PypnG~lHiGHa~~~~~~DvlaRy~rm~G~~V~~~~G~D~~Glpie~~a~~~g~~p~~~~~~~i~~~~~~l~ 133 (880)
T 4arc_A 54 KYYCLSMLPYPSGRLHMGHVRNYTIGDVIARYQRMLGKNVLQPIGWDAFGLPAEGAAVKNNTAPAPWTYDNIAYMKNQLK 133 (880)
T ss_dssp EEEEEECCCCCCSSCCHHHHHHHHHHHHHHHHHHHTTCEEECCCEECCCSTHHHHHHHHTTSCHHHHHHHHHHHHHHHHH
T ss_pred CEEEEcCCCCCCCCcchhhhHHHHHHHHHHHHHHHcCCceEEecCccccCcHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 46777776 7889999999887653 2445544 788865 4446665431 123333 3455677888899
Q ss_pred HcCcCCC
Q 018259 144 ACGIDNS 150 (359)
Q Consensus 144 A~GlDp~ 150 (359)
++|+..+
T Consensus 134 ~LGis~D 140 (880)
T 4arc_A 134 MLGFGYD 140 (880)
T ss_dssp HTTCCCC
T ss_pred HhCCCcC
Confidence 9998766
No 65
>1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold, coiled coil, riken structural genomics/proteomics initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus} SCOP: a.2.7.3 a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1ivs_A* 1iyw_A
Probab=84.68 E-value=2 Score=46.63 Aligned_cols=45 Identities=24% Similarity=0.285 Sum_probs=31.3
Q ss_pred CceEEEee-CCCCcchhhhHHHHHH--HHHHHhc--cCcEEE-EEecccee
Q 018259 78 KKRIVSGV-QPTGSIHLGNYLGAIK--NWIALQN--SYETLF-FIVDLHAI 122 (359)
Q Consensus 78 ~~~i~sGi-~PTG~lHLGnyig~i~--~~~~lQ~--~~~~~i-~IADlhA~ 122 (359)
++.|++|. -|||.+|+||.+..+. -+.++++ |+++.+ .--|-|.+
T Consensus 35 ~f~i~~ppPy~nG~lHiGHa~~~~l~Dii~Ry~rm~G~~vl~~~G~D~~Gl 85 (862)
T 1gax_A 35 PFVIFMPPPNVTGSLHMGHALDNSLQDALIRYKRMRGFEAVWLPGTDHAGI 85 (862)
T ss_dssp EEEEECCCCBSSSCCCHHHHHHHHHHHHHHHHHHTTTSEEEEECEEBCCTH
T ss_pred cEEEEcCCCCCCCCcchhhhHHHHHHHHHHHHHHhCCCccccccccCCCCc
Confidence 46777775 6799999999886553 2555554 788865 45566765
No 66
>3fnr_A Arginyl-tRNA synthetase; transferase, PSI-2, NYSGXRC, struc genomics, protein structure initiative; 2.20A {Campylobacter jejuni}
Probab=84.46 E-value=0.17 Score=51.26 Aligned_cols=39 Identities=26% Similarity=0.514 Sum_probs=27.6
Q ss_pred EEeeCCCCcchhhhHHHHHH--HHHHHhc--cCcEE--EEEeccc
Q 018259 82 VSGVQPTGSIHLGNYLGAIK--NWIALQN--SYETL--FFIVDLH 120 (359)
Q Consensus 82 ~sGi~PTG~lHLGnyig~i~--~~~~lQ~--~~~~~--i~IADlh 120 (359)
|+.--|||++|+||..+++. -+.++.+ |++|+ .-|.||=
T Consensus 36 ~ss~n~~~~~h~gh~r~~~~gd~~~r~~~~~G~~v~r~nyi~D~G 80 (464)
T 3fnr_A 36 YVSANPTGPLHIGHARGAVFGDTLTRLARHLGYKFNTEYYVNDAG 80 (464)
T ss_dssp CCCCCSSSSCBGGGHHHHHHHHHHHHHHHHTTCEEEEEEEECCCH
T ss_pred eCCCCCCCCCccchhHHHHHHHHHHHHHHHcCCceEEEeeeCCcc
Confidence 46678999999999887652 3445544 77764 6788863
No 67
>3c8z_A Cysteinyl-tRNA synthetase; cysteine ligase, rossmann fold, Cys-SA inhibitor, zinc binding, ATP-binding, aminoacyl-tRNA synthetase; HET: 5CA 1PE EPE; 1.60A {Mycobacterium smegmatis}
Probab=83.88 E-value=4.9 Score=39.59 Aligned_cols=78 Identities=15% Similarity=0.029 Sum_probs=47.9
Q ss_pred eEEEeeCCCCcchhhhHHHHHH--HHHHHhc--cCcEEE-EEeccceecC-------CCCHHH-HHHHHHHHHHHHHHcC
Q 018259 80 RIVSGVQPTGSIHLGNYLGAIK--NWIALQN--SYETLF-FIVDLHAITL-------PYDTQQ-LSKATRETAAIYLACG 146 (359)
Q Consensus 80 ~i~sGi~PTG~lHLGnyig~i~--~~~~lQ~--~~~~~i-~IADlhA~t~-------~~~~~~-l~~~~~~~~~~~lA~G 146 (359)
..++|-=|.|.+||||....+. -+.++++ |++|.+ .-.|.|..-. ..++.+ ..++...+.+++.++|
T Consensus 42 ~y~~gPt~yg~~HiGHar~~v~~DvlaR~lr~~G~~V~~~~~~dd~g~ki~~~A~~~g~~~~~~~~~~~~~~~~~~~~Lg 121 (414)
T 3c8z_A 42 MYVCGITPYDATHLGHAATYLTFDLVHRLWLDAGHTVQYVQNVTDVDDPLFERAERDGIDWRTLGDRETQLFREDMAALR 121 (414)
T ss_dssp EEECCCCTTSCCBHHHHHHHHHHHHHHHHHHHTTCEEEEEEEECCSCHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHTT
T ss_pred EEeCCCcCCCCcCccccHHHHHHHHHHHHHHHcCCCEEeCCCCCCccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcC
Confidence 3455656669999999887662 2444443 788854 4556554211 123433 3445667888999999
Q ss_pred cC-CCccEEEEccC
Q 018259 147 ID-NSKASVFVQSH 159 (359)
Q Consensus 147 lD-p~kt~i~~qS~ 159 (359)
+. ++ .++..|+
T Consensus 122 i~~~d--~~~r~t~ 133 (414)
T 3c8z_A 122 VLPPH--DYVAATD 133 (414)
T ss_dssp CCCCS--EEEEGGG
T ss_pred CCCCc--ceecccc
Confidence 98 65 3444554
No 68
>1li5_A Cysrs, cysteinyl-tRNA synthetase, transfer RNA-Cys; cysteine, E.coli, ligase; 2.30A {Escherichia coli} SCOP: a.27.1.1 c.26.1.1 PDB: 1li7_A 1u0b_B
Probab=83.46 E-value=2.3 Score=42.70 Aligned_cols=80 Identities=13% Similarity=0.087 Sum_probs=45.6
Q ss_pred ceEEE-eeCCCCcchhhhHHHHHH--HHHHHhc--cCcEEEE--EeccceecC------CCCHHHHH-HHHHHHHHHHHH
Q 018259 79 KRIVS-GVQPTGSIHLGNYLGAIK--NWIALQN--SYETLFF--IVDLHAITL------PYDTQQLS-KATRETAAIYLA 144 (359)
Q Consensus 79 ~~i~s-Gi~PTG~lHLGnyig~i~--~~~~lQ~--~~~~~i~--IADlhA~t~------~~~~~~l~-~~~~~~~~~~lA 144 (359)
.++|. |--|.|.+||||...++. -+.++++ |++|.+. +.|+-.-+. ..++.++. ++...+.+++.+
T Consensus 23 v~~yv~gPt~y~~~HiGHar~~v~~D~l~R~lr~~G~~V~~v~~~tD~d~ki~~~A~~~g~~~~~~~~~~~~~f~~~~~~ 102 (461)
T 1li5_A 23 VGMYVCGITVYDLCHIGHGRTFVAFDVVARYLRFLGYKLKYVRNITDIDDKIIKRANENGESFVAMVDRMIAEMHKDFDA 102 (461)
T ss_dssp EEEEECCCBSSSCCBHHHHHHHHHHHHHHHHHHHHTCEEEEEECBBCCSHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHH
T ss_pred eeEEEcCCcCCCCCcccccHHHHHHHHHHHHHHHcCCCEEEeecCCCCcHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 44444 433449999999887663 2334433 7887654 445421110 12444433 456678889999
Q ss_pred cCcCCCccEEEEccC
Q 018259 145 CGIDNSKASVFVQSH 159 (359)
Q Consensus 145 ~GlDp~kt~i~~qS~ 159 (359)
+|+.+.. .+...|+
T Consensus 103 LgI~~~d-~~~r~t~ 116 (461)
T 1li5_A 103 LNILRPD-MEPRATH 116 (461)
T ss_dssp TTCCCCS-BCCBGGG
T ss_pred cCCCCCc-ccccccc
Confidence 9998632 2344554
No 69
>1wkb_A Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, editing, amino acid, aminoacylation, trnaLeu, structural genomics; 2.05A {Pyrococcus horikoshii}
Probab=82.94 E-value=0.52 Score=50.53 Aligned_cols=83 Identities=22% Similarity=0.270 Sum_probs=44.4
Q ss_pred cccceeecccchHH-HHHHHHHHHHHhhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCcCCCCCCCCCC
Q 018259 215 YQSDFVPVGEDQKQ-HLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQS 293 (359)
Q Consensus 215 ~~adivpvG~DQ~~-hieLaRdia~k~n~~~g~~~~~~~~~~~~~~~~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~~s 293 (359)
+.+|+..+|.||.. |+...+-...- .++. .+.|..++.. .+|.. +| +|||||. +|
T Consensus 602 ~p~Di~~~G~D~~~~H~~~~~~~~~~---~~~~-------------~~~pk~v~~~--G~v~~--~G-~KMSKS~---GN 657 (810)
T 1wkb_A 602 YPLDWRCSGKDLIPNHLTFFIFNHVA---IFRE-------------EHWPKGIAVN--GFGTL--EG-QKMSKSK---GN 657 (810)
T ss_dssp CSCSEEEEEGGGTTTHHHHHHHHHHH---HSCG-------------GGSCCEEEEE--CCEEE--TT-BCCCTTT---TC
T ss_pred CCceEEeecccccccHHHHHHHHHHH---HcCc-------------cccccEEEEE--eEEEe--CC-eehhhcC---CC
Confidence 46899999999965 65554322211 1221 1124433321 22332 66 7999997 68
Q ss_pred eeecCC-----CHHHHHHHhhhccCCCCCCcccC
Q 018259 294 RINLLD-----PKDVIANKIKRCKTDSSAGLEFD 322 (359)
Q Consensus 294 ~I~L~D-----~p~~I~kKI~rA~Td~~~~i~~~ 322 (359)
.|.+.| .++.++-=+..+ ++....+.++
T Consensus 658 vv~p~dli~~yGaDalR~~ll~~-~~~~~d~~fs 690 (810)
T 1wkb_A 658 VLNFIDAIEENGADVVRLYIMSL-AEHDSDFDWR 690 (810)
T ss_dssp CCBHHHHHHHHCHHHHHHHHHHH-CCTTCCEEEC
T ss_pred cCCHHHHHHHcChHHHHHHHHhc-CCCCCCcccC
Confidence 887654 455555444322 2333344443
No 70
>3sp1_A Cysteinyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, LYME disease; HET: AMP; 2.55A {Borrelia burgdorferi}
Probab=82.66 E-value=5.5 Score=40.69 Aligned_cols=74 Identities=15% Similarity=0.099 Sum_probs=44.6
Q ss_pred CceEE-EeeCCCCcchhhhHHHHHH--HHHHHhc--cCcEEEE--Eecc---------c--eecC-----CCCHHH-HHH
Q 018259 78 KKRIV-SGVQPTGSIHLGNYLGAIK--NWIALQN--SYETLFF--IVDL---------H--AITL-----PYDTQQ-LSK 133 (359)
Q Consensus 78 ~~~i~-sGi~PTG~lHLGnyig~i~--~~~~lQ~--~~~~~i~--IADl---------h--A~t~-----~~~~~~-l~~ 133 (359)
++++| +|-=|.|.+||||....+. -+.++++ |++|.+. |.|+ | .+.. ..++.+ ..+
T Consensus 42 ~v~~YvcgPTvYg~~HIGHar~~v~~Dvl~R~lr~~Gy~V~~v~niTDvGhltG~~DehddKI~~~A~~~g~~~~e~a~~ 121 (501)
T 3sp1_A 42 NVKVYACGPTVYNYAHIGNFRTYIFGDLLIKTLRFLGYKVNYAMNITDIGHLTGDLDDGEDKVAKTAREKGLTVYEISEF 121 (501)
T ss_dssp CEEEEECCCBCSSCCCHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEBCSCCC-------------------CCHHHHHHH
T ss_pred cceEEeCCCcCCCCcchhhhHHHHHHHHHHHHHHHcCCceeEEeeecccccccCCCCCCCcHHHHHHHHcCCCHHHHHHH
Confidence 34444 4545559999999877552 2333333 8998776 4444 2 2222 124444 446
Q ss_pred HHHHHHHHHHHcCcCCCc
Q 018259 134 ATRETAAIYLACGIDNSK 151 (359)
Q Consensus 134 ~~~~~~~~~lA~GlDp~k 151 (359)
++..+.+++.++|+.++.
T Consensus 122 ~~~~f~~d~~~Lgi~~d~ 139 (501)
T 3sp1_A 122 FTEAFFNDCRKLNIVYPD 139 (501)
T ss_dssp HHHHHHHHHHHTTCCCCS
T ss_pred HHHHHHHHHHHcCCCCCC
Confidence 677888899999998774
No 71
>3c8z_A Cysteinyl-tRNA synthetase; cysteine ligase, rossmann fold, Cys-SA inhibitor, zinc binding, ATP-binding, aminoacyl-tRNA synthetase; HET: 5CA 1PE EPE; 1.60A {Mycobacterium smegmatis}
Probab=81.51 E-value=0.53 Score=46.59 Aligned_cols=89 Identities=21% Similarity=0.175 Sum_probs=36.9
Q ss_pred HhhhhhhcccceeecccchHH-HHHHHHHHHHHhhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCcCCC
Q 018259 208 MASDILLYQSDFVPVGEDQKQ-HLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSK 286 (359)
Q Consensus 208 QAADIl~~~adivpvG~DQ~~-hieLaRdia~k~n~~~g~~~~~~~~~~~~~~~~~P~~l~~~~~~~l~sL~dg~~KMSK 286 (359)
|+...+-...|+..+|.|+.. |++...-...-+ +|... -+..+++. .+| .+ +| +||||
T Consensus 236 ~~~~~~g~~~di~~~G~D~~~~H~~~~~a~~~a~---~g~~~-------------~~~~~~h~--g~v-~~-~G-~KMSK 294 (414)
T 3c8z_A 236 IALTRIGTGLDIQGGGSDLIFPHHEYSAAHAESV---TGERR-------------FARHYVHT--GMI-GW-DG-HKMSK 294 (414)
T ss_dssp HHHHHTCSCEEEEEEEGGGTTTHHHHHHHHHHHH---HCCSC-------------SEEEEEEE--CCB-C----------
T ss_pred HHHHhcCCCceEEEeccccccHHHHHHHHHHHHh---cCCCC-------------cCeEEEEc--CEE-ec-CC-eEccc
Confidence 344444346899999999877 666544333332 23211 12223321 122 23 66 69999
Q ss_pred CCCCCCCeeecCC------CHHHHHHHhhhccCCCCCCcccC
Q 018259 287 SAPSDQSRINLLD------PKDVIANKIKRCKTDSSAGLEFD 322 (359)
Q Consensus 287 S~p~~~s~I~L~D------~p~~I~kKI~rA~Td~~~~i~~~ 322 (359)
|. +|.|.+.| .++.++--+.+ ++....+.++
T Consensus 295 S~---GN~v~~~~ll~~g~g~D~lR~~ll~--~~~~~d~~fs 331 (414)
T 3c8z_A 295 SR---GNLVLVSQLRAQGVDPSAIRLGLFS--GHYREDRFWS 331 (414)
T ss_dssp --------CBHHHHHHTTCCHHHHHHHHHT--SCTTSCBCCC
T ss_pred cc---CCcCCHHHHhhccCCcchheeEEEe--cCcCCCCCcC
Confidence 97 67776642 34555544444 3444445554
No 72
>1li5_A Cysrs, cysteinyl-tRNA synthetase, transfer RNA-Cys; cysteine, E.coli, ligase; 2.30A {Escherichia coli} SCOP: a.27.1.1 c.26.1.1 PDB: 1li7_A 1u0b_B
Probab=80.59 E-value=0.84 Score=45.95 Aligned_cols=88 Identities=23% Similarity=0.228 Sum_probs=47.4
Q ss_pred HhhhhhhcccceeecccchH-HHHHHHHHHHHHhhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCcCCC
Q 018259 208 MASDILLYQSDFVPVGEDQK-QHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSK 286 (359)
Q Consensus 208 QAADIl~~~adivpvG~DQ~-~hieLaRdia~k~n~~~g~~~~~~~~~~~~~~~~~P~~l~~~~~~~l~sL~dg~~KMSK 286 (359)
|+...+--..|+..+|.|+. +|++ .++|...-. +|. +.|..+++. .+|. + +| +||||
T Consensus 212 m~~~~lg~~~dih~gG~Dl~fpH~~--~~~aq~~a~-~g~--------------~~~~~~~h~--g~v~-~-~G-~KMSK 269 (461)
T 1li5_A 212 MNCKQLGNHFDIHGGGSDLMFPHHE--NEIAQSTCA-HDG--------------QYVNYWMHS--GMVM-V-DR-EKMSK 269 (461)
T ss_dssp HHHHHHCSSEEEEECBGGGTTTHHH--HHHHHHHHH-SSS--------------CCEEEECCB--CCEE-E-TT-BCCCG
T ss_pred HHHHHhCCCceEEeccCccCchHHH--HHHHHHHHh-cCC--------------CCCcEEEEe--eEEE-E-CC-eEccc
Confidence 34444434679999999976 4543 344444321 232 124334431 2332 2 66 79999
Q ss_pred CCCCCCCeeecCC-----CHHHHHHHhhhccCCCCCCcccC
Q 018259 287 SAPSDQSRINLLD-----PKDVIANKIKRCKTDSSAGLEFD 322 (359)
Q Consensus 287 S~p~~~s~I~L~D-----~p~~I~kKI~rA~Td~~~~i~~~ 322 (359)
|. +|.|.+.| .++.++--+.+ +..+..+.++
T Consensus 270 S~---GN~v~~~dll~~~g~dalR~~ll~--~~~~~~~~fs 305 (461)
T 1li5_A 270 SL---GNFFTVRDVLKYYDAETVRYFLMS--GHYRSQLNYS 305 (461)
T ss_dssp GG---TCCCBHHHHHTTSCHHHHHHHHHS--SCTTSCEEEC
T ss_pred cC---CCccChhHHhhhCCHHHHHHHHHc--CCcCCCCCCC
Confidence 97 67887654 56666655554 2333334443
No 73
>3h99_A Methionyl-tRNA synthetase; rossmann fold, aminoacyl-tRNA synthetase, ATP-binding, ligas binding, nucleotide-binding, protein biosynthesis; HET: CIT; 1.40A {Escherichia coli} PDB: 3h97_A* 3h9b_A* 1f4l_A 3h9c_A* 1pfv_A* 1pfu_A 1p7p_A* 1pfw_A* 1pfy_A* 1pg0_A* 1pg2_A* 1qqt_A 1mea_A 1med_A
Probab=80.02 E-value=0.68 Score=47.43 Aligned_cols=29 Identities=28% Similarity=0.237 Sum_probs=18.4
Q ss_pred CCCCcCCCCCCCCCCeeecCC-----CHHHHHHHhhhc
Q 018259 279 DGLSKMSKSAPSDQSRINLLD-----PKDVIANKIKRC 311 (359)
Q Consensus 279 dg~~KMSKS~p~~~s~I~L~D-----~p~~I~kKI~rA 311 (359)
+| +|||||. +|.|.+.| .++.++--+.+.
T Consensus 342 ~G-~KMSKS~---GNvv~p~d~i~~~GaDalR~~ll~~ 375 (560)
T 3h99_A 342 NG-AKMSKSR---GTFIKASTWLNHFDADSLRYYYTAK 375 (560)
T ss_dssp TT-EECCTTT---TCCCBHHHHHHHSCHHHHHHHHHHH
T ss_pred CC-eeccccC---CCcCCHHHHHHHcCcHHHHHHHHHh
Confidence 66 7999997 67776644 444444444443
No 74
>1wz2_A Leucyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiativ structural genomics, ligase-RNA complex; 3.21A {Pyrococcus horikoshii}
Probab=79.61 E-value=0.75 Score=50.50 Aligned_cols=83 Identities=22% Similarity=0.287 Sum_probs=44.1
Q ss_pred cccceeecccchHH-HHHHHHHHHHHhhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCcCCCCCCCCCC
Q 018259 215 YQSDFVPVGEDQKQ-HLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQS 293 (359)
Q Consensus 215 ~~adivpvG~DQ~~-hieLaRdia~k~n~~~g~~~~~~~~~~~~~~~~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~~s 293 (359)
+-+|+...|.||.. |+...+-...- .++.. +.|..++.. .++.. +| +|||||. +|
T Consensus 602 ~P~Di~~~G~D~i~~H~~~~~~~~~a---~~~~~-------------~~pk~v~~~--G~v~~--~G-~KMSKS~---GN 657 (967)
T 1wz2_A 602 YPLDWRCSGKDLIPNHLTFFIFNHVA---IFREE-------------HWPKGIAVN--GFGTL--EG-QKMSKSK---GN 657 (967)
T ss_dssp CSCSEEEEEGGGTTTHHHHHHHHHHH---HSCST-------------TSCCCEEEE--CCEEE--SS-SCCCTTT---CC
T ss_pred CCCeEEeeeeCcchhHHHHHHHHHHH---HcCcc-------------cccceEEEe--eEEee--CC-EEccccc---cC
Confidence 56899999999964 55554222111 12211 124333321 23332 66 7999997 68
Q ss_pred eeecCC-----CHHHHHHHhhhccCCCCCCcccC
Q 018259 294 RINLLD-----PKDVIANKIKRCKTDSSAGLEFD 322 (359)
Q Consensus 294 ~I~L~D-----~p~~I~kKI~rA~Td~~~~i~~~ 322 (359)
.|.+.| .++.++-=+..+ ++....+.++
T Consensus 658 vv~p~d~i~~yGaDalR~~ll~~-~~~~~d~~fs 690 (967)
T 1wz2_A 658 VLNFIDAIEENGADVVRLYIMSL-AEHDSDFDWR 690 (967)
T ss_dssp CCBHHHHHHTTCHHHHHHHHHHH-CCTTCCEEEC
T ss_pred CCCHHHHHHHhChHHHHHHHHhC-CCCCCCcccC
Confidence 887654 555555555432 2333344443
No 75
>1ffy_A Isoleucyl-tRNA synthetase; protein-RNA complex, metal IONS, editing tRNA synthetase, double-sieve, ligase/RNA, mupiroci; HET: MRC; 2.20A {Staphylococcus aureus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1qu2_A* 1qu3_A*
Probab=79.15 E-value=1.4 Score=48.08 Aligned_cols=79 Identities=28% Similarity=0.256 Sum_probs=43.7
Q ss_pred hcccceeecccchH---HHHHHHHHHHHHhhhhhCCccccccCCCCCccccCC-c-eecCCCCcccccCCCCCCcCCCCC
Q 018259 214 LYQSDFVPVGEDQK---QHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVP-E-PLIPPAGARVMSLTDGLSKMSKSA 288 (359)
Q Consensus 214 ~~~adivpvG~DQ~---~hieLaRdia~k~n~~~g~~~~~~~~~~~~~~~~~P-~-~l~~~~~~~l~sL~dg~~KMSKS~ 288 (359)
.+-+|+...|.||. .|-.+...++- .|. .| . .+.+ .++... +| +|||||.
T Consensus 546 ~~P~Dl~~~G~D~~r~wf~~~l~~s~~~-----~g~---------------~Pfk~v~~h---G~V~d~-~G-~KMSKSl 600 (917)
T 1ffy_A 546 SFPADMYLEGSDQYRGWFNSSITTSVAT-----RGV---------------SPYKFLLSH---GFVMDG-EG-KKMSKSL 600 (917)
T ss_dssp CSSBSEEEEEGGGGTTHHHHHHHHHHHH-----HSS---------------CSBSEEEEE---CCEECT-TS-CCCCSSS
T ss_pred CCCceEEEEEecccccHHHHHHHHHHHh-----hCC---------------CcccceeEe---eeEEcC-CC-cCccccc
Confidence 35689999999996 34444444441 132 12 2 2333 334432 56 7999997
Q ss_pred CCCCCeeecCC-----CHHHHHHHhhhccCCCCCCcccC
Q 018259 289 PSDQSRINLLD-----PKDVIANKIKRCKTDSSAGLEFD 322 (359)
Q Consensus 289 p~~~s~I~L~D-----~p~~I~kKI~rA~Td~~~~i~~~ 322 (359)
+|.|...| .++.++-=+.. ++....+.++
T Consensus 601 ---GNvV~P~dvi~~yGaDalR~~lls--~~~~~D~~fs 634 (917)
T 1ffy_A 601 ---GNVIVPDQVVKQKGADIARLWVSS--TDYLADVRIS 634 (917)
T ss_dssp ---SCCCCHHHHHHHTCHHHHHHHHHT--SCTTSCEECC
T ss_pred ---CCcCChHHHHHhCCHHHHHHHHhc--cCCCCCcccC
Confidence 67886543 34444444443 4544445554
No 76
>1ile_A Ilers, isoleucyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics; 2.50A {Thermus thermophilus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1jzq_A* 1jzs_A*
Probab=77.59 E-value=1.2 Score=48.02 Aligned_cols=14 Identities=36% Similarity=0.764 Sum_probs=11.7
Q ss_pred cccceeecccchHH
Q 018259 215 YQSDFVPVGEDQKQ 228 (359)
Q Consensus 215 ~~adivpvG~DQ~~ 228 (359)
+-+|+...|.||..
T Consensus 543 ~P~dl~~~G~D~~r 556 (821)
T 1ile_A 543 FPADFIAEGIDQTR 556 (821)
T ss_dssp SSBSBEEEEGGGGG
T ss_pred CCcccccchhhhhc
Confidence 46899999999964
No 77
>1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold, coiled coil, riken structural genomics/proteomics initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus} SCOP: a.2.7.3 a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1ivs_A* 1iyw_A
Probab=76.26 E-value=0.91 Score=49.35 Aligned_cols=60 Identities=30% Similarity=0.372 Sum_probs=37.8
Q ss_pred cccceeecccchHHHHHHHHHHHHHhhhhhCCccccccCCCCCccccCC--ceecCCCCcccccCCCCCCcCCCCCCCCC
Q 018259 215 YQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVP--EPLIPPAGARVMSLTDGLSKMSKSAPSDQ 292 (359)
Q Consensus 215 ~~adivpvG~DQ~~hieLaRdia~k~n~~~g~~~~~~~~~~~~~~~~~P--~~l~~~~~~~l~sL~dg~~KMSKS~p~~~ 292 (359)
|-+|+...|.||.. +=++|.++..+. ..|. .| ..+++ .++... +| +|||||. +
T Consensus 480 ~P~d~~v~G~Dii~-~W~a~~~~~~~~-~~g~---------------~Pfk~v~~h---G~vld~-~G-~KMSKSl---G 534 (862)
T 1gax_A 480 YPGDVLVTGYDILF-LWVSRMEVSGYH-FMGE---------------RPFKTVLLH---GLVLDE-KG-QKMSKSK---G 534 (862)
T ss_dssp CSBSCEEEEGGGTT-TTHHHHHHHHHH-HSSS---------------CSBSEEEEE---CCEECT-TS-CBCCTTT---T
T ss_pred CCceEEecCccccc-cHHHHHHHHHHH-hcCC---------------CcccEEEEe---eeEEcC-CC-CCccccC---C
Confidence 56899999999975 456777776543 2232 13 23333 334443 66 7999997 6
Q ss_pred CeeecCC
Q 018259 293 SRINLLD 299 (359)
Q Consensus 293 s~I~L~D 299 (359)
|.|...|
T Consensus 535 NvIdP~d 541 (862)
T 1gax_A 535 NVIDPLE 541 (862)
T ss_dssp CCCCHHH
T ss_pred CCCCHHH
Confidence 7776544
No 78
>1ffy_A Isoleucyl-tRNA synthetase; protein-RNA complex, metal IONS, editing tRNA synthetase, double-sieve, ligase/RNA, mupiroci; HET: MRC; 2.20A {Staphylococcus aureus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1qu2_A* 1qu3_A*
Probab=76.11 E-value=3 Score=45.58 Aligned_cols=46 Identities=17% Similarity=0.304 Sum_probs=33.1
Q ss_pred CceEEEee-CCCCcchhhhHHHHHHH--HHHHhc--cCcEEE-EEeccceec
Q 018259 78 KKRIVSGV-QPTGSIHLGNYLGAIKN--WIALQN--SYETLF-FIVDLHAIT 123 (359)
Q Consensus 78 ~~~i~sGi-~PTG~lHLGnyig~i~~--~~~lQ~--~~~~~i-~IADlhA~t 123 (359)
++.+.+|. -|||.+||||.+..+.+ ++++++ |+++.+ .--|-|.+-
T Consensus 49 ~f~i~~~pPY~nG~lHiGHa~n~~~~Dii~Ry~rm~G~~v~~~~GwD~hGlp 100 (917)
T 1ffy_A 49 TFILHDGPPYANGNLHMGHALNKILKDFIVRYKTMQGFYAPYVPGWDTHGLP 100 (917)
T ss_dssp BCCEECCCCBSSSCCCHHHHHHHHHHHHHHHHHHTTTCBCCCCCEEBCCSHH
T ss_pred ceeeCCCCCCCCCcchHHHHHHHHHHHHHHHHHHhCCCCCCCcccCchhhHH
Confidence 57788888 78999999999875532 555554 788754 566777763
No 79
>2v0c_A Aminoacyl-tRNA synthetase; ligase, nucleotide-binding, protein biosynthesis; HET: LMS ANZ; 1.85A {Thermus thermophilus} PDB: 1h3n_A* 1obc_A* 1obh_A* 2bte_A* 2byt_A 2v0g_A*
Probab=72.85 E-value=5.1 Score=43.57 Aligned_cols=73 Identities=16% Similarity=0.180 Sum_probs=46.1
Q ss_pred CceEEEee-CCCCcchhhhHHHHHH--HHHHHhc--cCcEEEE-EeccceecC-------CCCH-HHHHHHHHHHHHHHH
Q 018259 78 KKRIVSGV-QPTGSIHLGNYLGAIK--NWIALQN--SYETLFF-IVDLHAITL-------PYDT-QQLSKATRETAAIYL 143 (359)
Q Consensus 78 ~~~i~sGi-~PTG~lHLGnyig~i~--~~~~lQ~--~~~~~i~-IADlhA~t~-------~~~~-~~l~~~~~~~~~~~l 143 (359)
+..+++|+ -|+|.+||||....+. -+.++++ |+++.+. --|-|.+-. ..++ +...+++..+..++.
T Consensus 34 k~~v~~~~Py~nG~lHiGHa~~~~~~Dvl~Ry~rm~G~~V~~~~G~D~~Glpie~~a~k~g~~~~~~~~~~~~~~~~~~~ 113 (878)
T 2v0c_A 34 KQYVLVMFPYPSGDLHMGHLKNYTMGDVLARFRRMQGYEVLHPMGWDAFGLPAENAALKFGVHPKDWTYANIRQAKESLR 113 (878)
T ss_dssp EEEEEECCCCCSSCCBHHHHHHHHHHHHHHHHHHHHTCEEECCCCBCCSSHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred CEEEECCCCCCCCCcchhhhHHHHHHHHHHHHHHhcCCceEeecccCcccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 46777774 5679999999887653 2444444 7888653 345454421 1233 334456677888899
Q ss_pred HcCcCCC
Q 018259 144 ACGIDNS 150 (359)
Q Consensus 144 A~GlDp~ 150 (359)
++|+..+
T Consensus 114 ~LGi~~D 120 (878)
T 2v0c_A 114 LMGILYD 120 (878)
T ss_dssp HTTCCCC
T ss_pred HhCCccC
Confidence 9998655
No 80
>1wkb_A Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, editing, amino acid, aminoacylation, trnaLeu, structural genomics; 2.05A {Pyrococcus horikoshii}
Probab=71.97 E-value=3.6 Score=43.96 Aligned_cols=45 Identities=18% Similarity=0.208 Sum_probs=29.4
Q ss_pred CceEEEee-CCCCcchhhhHHHHHHH--HHHHhc--cCcEEEE-Eecccee
Q 018259 78 KKRIVSGV-QPTGSIHLGNYLGAIKN--WIALQN--SYETLFF-IVDLHAI 122 (359)
Q Consensus 78 ~~~i~sGi-~PTG~lHLGnyig~i~~--~~~lQ~--~~~~~i~-IADlhA~ 122 (359)
++.|..|. -|+|.+||||.+..+.. +.++++ |++|.+. --|.|.+
T Consensus 35 ~~~i~~~~Py~nG~lHiGH~~~~~~~D~i~R~~rm~G~~V~~~~G~D~~G~ 85 (810)
T 1wkb_A 35 KFYITVAFPYLSGHLHVGHARTYTIPDVIARFKRMQGYNVLFPMAWHITGS 85 (810)
T ss_dssp EEEEEECCCBTTSCCBHHHHHHHHHHHHHHHHHHHHTCEEECCCCBBCCBS
T ss_pred cEEEEeCCCCCCCCCccccchhHHHHHHHHHHHHcCCCccCcCCccCCCCC
Confidence 45666665 67899999999876632 445544 7888653 3355554
No 81
>3sp1_A Cysteinyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, LYME disease; HET: AMP; 2.55A {Borrelia burgdorferi}
Probab=70.48 E-value=1.9 Score=44.08 Aligned_cols=32 Identities=22% Similarity=0.089 Sum_probs=20.4
Q ss_pred HHhhhhhhcccceeecccch-HHHHHHHHHHHH
Q 018259 207 LMASDILLYQSDFVPVGEDQ-KQHLELTRELAE 238 (359)
Q Consensus 207 LQAADIl~~~adivpvG~DQ-~~hieLaRdia~ 238 (359)
-|+...|--..|+..+|.|. .+|++--.-...
T Consensus 244 am~~~~lg~~~DIH~gG~DLifpHheneiAqs~ 276 (501)
T 3sp1_A 244 AMNLEYFKDALDIHLGGVDHIGVHHINEIAIAE 276 (501)
T ss_dssp HHHHHHTTTCCCEEEEEGGGTTTHHHHHHHHHH
T ss_pred HHHHHHcCCCceEEeeccccccchHHHHHHHHH
Confidence 34455554567999999997 456665433333
No 82
>1irx_A Lysyl-tRNA synthetase; beta sandwitch, zinc-binding structure, rossmann fold, alpha-helix CAGE; 2.60A {Pyrococcus horikoshii} SCOP: a.97.1.2 c.26.1.1
Probab=63.77 E-value=2.4 Score=43.15 Aligned_cols=84 Identities=24% Similarity=0.309 Sum_probs=40.4
Q ss_pred hcccceeecccchHH---HHHHHHHHHHHhhhhhCCccccccCCCCCccccCCceecCCCCcccccCC-CCCCcCCCCCC
Q 018259 214 LYQSDFVPVGEDQKQ---HLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLT-DGLSKMSKSAP 289 (359)
Q Consensus 214 ~~~adivpvG~DQ~~---hieLaRdia~k~n~~~g~~~~~~~~~~~~~~~~~P~~l~~~~~~~l~sL~-dg~~KMSKS~p 289 (359)
.+..++-++|.|+.. ......+++.. .+|. +.|..++. .+|.. . +| +|||||.
T Consensus 228 ~l~~~vd~~G~Dh~~~h~s~~~~~~i~~~---alG~--------------~~p~~~h~---~~i~~-~g~g-~KmSKs~- 284 (523)
T 1irx_A 228 HFGVDFEPAGKDHLVAGSSYDTGKEIIKE---VYGK--------------EAPLSLMY---EFVGI-KGQK-GKMSGSK- 284 (523)
T ss_dssp HSCCCBCCEEHHHHSTTSHHHHHHHHHHH---HHCC--------------CCCBCCEE---CCEEE-SCC----------
T ss_pred HcCCCCcCCCcCccCCCcchhhHHHHHHH---HhCC--------------CCCeEEEE---EEEEe-CCCC-CCCCCcC-
Confidence 345556689999887 23344666632 3342 24644443 33433 2 34 7999997
Q ss_pred CCCCeeecCC-----CHHHHHHHhhhccCCCCCCcccCCC
Q 018259 290 SDQSRINLLD-----PKDVIANKIKRCKTDSSAGLEFDNL 324 (359)
Q Consensus 290 ~~~s~I~L~D-----~p~~I~kKI~rA~Td~~~~i~~~~~ 324 (359)
++.|.+.| .|+.++.-+.+. +....+.++..
T Consensus 285 --Gn~i~~~~~~~~~~pdalR~~l~~~--~~~~~~~fs~~ 320 (523)
T 1irx_A 285 --GNVILLSDLYEVLEPGLVRFIYARH--RPNKEIKIDLG 320 (523)
T ss_dssp ---CCCCHHHHHTTSCHHHHHHHHHSS--CTTSCEEECCS
T ss_pred --CCCCCHHHHHHHcCHHHHHHHHHhc--CCCCCceeCcc
Confidence 56665543 677777777653 44444555544
No 83
>1ile_A Ilers, isoleucyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics; 2.50A {Thermus thermophilus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1jzq_A* 1jzs_A*
Probab=61.74 E-value=3.6 Score=44.14 Aligned_cols=45 Identities=16% Similarity=0.187 Sum_probs=31.6
Q ss_pred CceEEEee-CCCCcchhhhHHHHHHH--HHHHhc--cCcEE-EEEecccee
Q 018259 78 KKRIVSGV-QPTGSIHLGNYLGAIKN--WIALQN--SYETL-FFIVDLHAI 122 (359)
Q Consensus 78 ~~~i~sGi-~PTG~lHLGnyig~i~~--~~~lQ~--~~~~~-i~IADlhA~ 122 (359)
++.++.|. -|||.+||||.++.+.+ +.++++ |+++. +.--|-|.+
T Consensus 39 ~f~i~~~pPy~nG~lHiGH~~~~~~~D~i~R~~rm~G~~v~~~~G~D~~Gl 89 (821)
T 1ile_A 39 RYTVYEGPPTANGLPHVGHAQARSYKDLFPRYKTMRGYYAPRRAGWDTHGL 89 (821)
T ss_dssp BCCBCCCCCCTTSCCCTTHHHHHHHHHHHHHHHHHTTCBCCCEEEECCCHH
T ss_pred cEEEecCCCCCCCCCchhhhHhHHHHHHHHHHHHhcCCcccccccccCCCc
Confidence 56777777 88999999999875532 445544 78875 455566665
No 84
>1f7u_A Arginyl-tRNA synthetase; RNA-protein complex, aminoacylation; HET: PSU 1MG 2MG H2U M2G 5MC 5MU 1MA ARG; 2.20A {Saccharomyces cerevisiae} SCOP: a.27.1.1 c.26.1.1 d.67.2.1 PDB: 1bs2_A* 1f7v_A*
Probab=59.45 E-value=5.9 Score=41.29 Aligned_cols=40 Identities=18% Similarity=0.200 Sum_probs=29.0
Q ss_pred eEEEeeCCCCcchhhhHHHHH--HHHHHHhc--cCcEE--EEEecc
Q 018259 80 RIVSGVQPTGSIHLGNYLGAI--KNWIALQN--SYETL--FFIVDL 119 (359)
Q Consensus 80 ~i~sGi~PTG~lHLGnyig~i--~~~~~lQ~--~~~~~--i~IADl 119 (359)
.=|+|--|+|.+|+||..+++ .-+.++.+ |++|+ .-|.||
T Consensus 147 ve~~spN~~~plHvGHlRs~iiGD~laRil~~~G~~V~~~~~i~D~ 192 (607)
T 1f7u_A 147 IEFSSPNIAKPFHAGHLRSTIIGGFLANLYEKLGWEVIRMNYLGDW 192 (607)
T ss_dssp EECCCCBTTSCCBGGGHHHHHHHHHHHHHHHHTTCEEEEEEEEBCC
T ss_pred EEecCCCCCCCCccchHHHHHHHHHHHHHHHHcCCCeeEEEeecCc
Confidence 335688899999999988766 23555554 78875 468884
No 85
>2v0c_A Aminoacyl-tRNA synthetase; ligase, nucleotide-binding, protein biosynthesis; HET: LMS ANZ; 1.85A {Thermus thermophilus} PDB: 1h3n_A* 1obc_A* 1obh_A* 2bte_A* 2byt_A 2v0g_A*
Probab=57.00 E-value=4.8 Score=43.77 Aligned_cols=25 Identities=20% Similarity=0.123 Sum_probs=19.4
Q ss_pred cccceeecccch-HHHHHHHHHHHHH
Q 018259 215 YQSDFVPVGEDQ-KQHLELTRELAER 239 (359)
Q Consensus 215 ~~adivpvG~DQ-~~hieLaRdia~k 239 (359)
+-+|+...|.|| .-|+-.+|=+..-
T Consensus 530 ~P~D~yi~G~d~~ilhl~y~r~~~~~ 555 (878)
T 2v0c_A 530 MPVDQYIGGVEHAVLHLLYSRFFTKF 555 (878)
T ss_dssp CSBSEEECCGGGTTTHHHHHHHHHHH
T ss_pred CCCeEEEechHHHHHHHHHHHHHHHH
Confidence 569999999999 6777777766553
No 86
>4arc_A Leucine--tRNA ligase; ligase-RNA complex, nucleotide-binding, protein biosynthesis I aminoacyl-tRNA synthetase, ATP-binding; 2.00A {Escherichia coli} PDB: 4aq7_A 4ari_A* 4as1_A*
Probab=56.92 E-value=6.4 Score=42.86 Aligned_cols=26 Identities=19% Similarity=0.128 Sum_probs=20.2
Q ss_pred cccceeecccch-HHHHHHHHHHHHHh
Q 018259 215 YQSDFVPVGEDQ-KQHLELTRELAERV 240 (359)
Q Consensus 215 ~~adivpvG~DQ-~~hieLaRdia~k~ 240 (359)
+-+|+-.+|.|| .-|+-.+|=+-+-+
T Consensus 542 ~PvD~yigG~EHailHllyaRf~~~~L 568 (880)
T 4arc_A 542 LPVDIYIGGIEHAIMHLLYFRFFHKLM 568 (880)
T ss_dssp CSEEEEECCGGGTTTHHHHHHHHHHHH
T ss_pred CCceEeecchhhHHHHHHHHHHHHHHH
Confidence 568999999999 56888888554443
No 87
>1wz2_A Leucyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiativ structural genomics, ligase-RNA complex; 3.21A {Pyrococcus horikoshii}
Probab=56.37 E-value=5.2 Score=43.86 Aligned_cols=46 Identities=17% Similarity=0.230 Sum_probs=31.5
Q ss_pred CCceEEEee-CCCCcchhhhHHHHHHH--HHHHhc--cCcEEE-EEecccee
Q 018259 77 VKKRIVSGV-QPTGSIHLGNYLGAIKN--WIALQN--SYETLF-FIVDLHAI 122 (359)
Q Consensus 77 ~~~~i~sGi-~PTG~lHLGnyig~i~~--~~~lQ~--~~~~~i-~IADlhA~ 122 (359)
.++.++.|. -|||.+|+||.+..+.+ +.++++ |++|.+ +-=|-|.+
T Consensus 34 ~kf~i~~~pPy~nG~lHiGH~~~~~~~Dii~Ry~rm~G~~Vl~~~GwD~~Gl 85 (967)
T 1wz2_A 34 KKFYITVAFPYLSGHLHVGHARTYTIPDVIARFKRMQGYNVLFPMAWHITGS 85 (967)
T ss_dssp GCCBEEECCCBCSSCCBHHHHHHHHHHHHHHHHHHHTTCCCBCCCCBBCCSS
T ss_pred CcEEEEeCCCCCCCCcchhhhHHHHHHHHHHHHHHcCCCccCCCCcCCCCCc
Confidence 367888888 78999999998875532 445554 788755 33455554
No 88
>3fnr_A Arginyl-tRNA synthetase; transferase, PSI-2, NYSGXRC, struc genomics, protein structure initiative; 2.20A {Campylobacter jejuni}
Probab=55.61 E-value=7.3 Score=39.23 Aligned_cols=60 Identities=23% Similarity=0.179 Sum_probs=34.7
Q ss_pred cccee--ecccchHHHHHHHHHHHHHhhhhhCCccccccCCCCCccccCCc--eecCCCCcccccCCCCC-CcCCCCCCC
Q 018259 216 QSDFV--PVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPE--PLIPPAGARVMSLTDGL-SKMSKSAPS 290 (359)
Q Consensus 216 ~adiv--pvG~DQ~~hieLaRdia~k~n~~~g~~~~~~~~~~~~~~~~~P~--~l~~~~~~~l~sL~dg~-~KMSKS~p~ 290 (359)
+.|.+ .+|.||..|+.--..+++.++.. .|. .+.. .++.-..||. .|||||.
T Consensus 234 ~~d~~Iyv~G~dq~~~f~~l~~~l~~lG~~------------------~~~~~h~~~---g~V~l~~dG~~~KMSKr~-- 290 (464)
T 3fnr_A 234 GYGKCINIWGADHHGYIPRMKAAMEFLGFD------------------SNNLEIILA---QMVSLLKDGEPYKMSKRA-- 290 (464)
T ss_dssp SCSEEEEEEEGGGGGGHHHHHHHHHTTTCC------------------GGGEEEEEE---CCEEEEETTEECCC---C--
T ss_pred CCCeEEEEecCcHHHHHHHHHHHHHHcCCC------------------ccceEEEEe---eeEEecCCCcccCCcCcC--
Confidence 35544 79999999999887788776521 121 1222 2231113664 5999997
Q ss_pred CCCeeecCC
Q 018259 291 DQSRINLLD 299 (359)
Q Consensus 291 ~~s~I~L~D 299 (359)
++.|.+.|
T Consensus 291 -Gn~v~l~d 298 (464)
T 3fnr_A 291 -GNFILMSD 298 (464)
T ss_dssp -CSSCBHHH
T ss_pred -CCCCCHHH
Confidence 68887755
No 89
>3oqi_A YVMC, putative uncharacterized protein YVMC; tRNA, rossmann fold, ligase; HET: NHE; 1.70A {Bacillus licheniformis} PDB: 3oqh_A* 3oqj_A* 3s7t_A* 3oqi_B*
Probab=55.60 E-value=39 Score=31.55 Aligned_cols=82 Identities=13% Similarity=0.252 Sum_probs=58.2
Q ss_pred CceEEEeeCCCCcchhhhHHHHHHHHHHHhccC-cEEEEEeccceecC----CCCHHHHHHHH--------HHHHHHHHH
Q 018259 78 KKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSY-ETLFFIVDLHAITL----PYDTQQLSKAT--------RETAAIYLA 144 (359)
Q Consensus 78 ~~~i~sGi~PTG~lHLGnyig~i~~~~~lQ~~~-~~~i~IADlhA~t~----~~~~~~l~~~~--------~~~~~~~lA 144 (359)
...++.||-|=-.-|=+.++-.+..| .+..+ +|-|+++|.++--+ ..++.+.++.+ +.+...|.+
T Consensus 29 g~HallGISpgNsyFs~d~L~~Li~W--a~~~F~~vdVli~D~~~~~~l~A~G~~~~~A~rKArre~~~~r~~i~ral~~ 106 (257)
T 3oqi_A 29 RRHVLVGISPFNSRFSEDYIHRLIAW--AVREFQSVSVLLAGKEAANLLEALGTPHGKAERKVRKEVSRNRRFAEKALEA 106 (257)
T ss_dssp TCEEEEEECTTSTTCCHHHHHHHHHH--HHHHCSEEEEEECCTTHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEeCCCCcccCHHHHHHHHHH--HHccCCceEEEeCCHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46899999999888999999888899 46666 47899999865432 33444333322 345556677
Q ss_pred cCcCCCccEEEEccCcchh
Q 018259 145 CGIDNSKASVFVQSHVRAH 163 (359)
Q Consensus 145 ~GlDp~kt~i~~qS~~~~~ 163 (359)
+|++.+ .+..=||+..+
T Consensus 107 ~g~~~~--~v~~~Sd~~~~ 123 (257)
T 3oqi_A 107 HGGNPE--DIHTFSDFANQ 123 (257)
T ss_dssp HTCCTT--CEEETTTTTTC
T ss_pred cCCCcc--cceeHHHhhcC
Confidence 799887 57777887543
No 90
>3foc_A Tryptophanyl-tRNA synthetase; structural genomics, giardiasi aminoacyl-tRNA synthetase, ligase; 2.09A {Giardia lamblia atcc 50803}
Probab=45.73 E-value=4.7 Score=40.66 Aligned_cols=13 Identities=15% Similarity=0.110 Sum_probs=3.6
Q ss_pred eecccchHHHHHH
Q 018259 220 VPVGEDQKQHLEL 232 (359)
Q Consensus 220 vpvG~DQ~~hieL 232 (359)
||||.||++|.|-
T Consensus 237 vp~~~d~~~~~~~ 249 (451)
T 3foc_A 237 VPLPVGTGNEDAA 249 (451)
T ss_dssp CBCC---------
T ss_pred cccccccccchhh
Confidence 6999999999544
No 91
>3oqv_A ALBC; rossman fold, cyclodipeptide synthase, aminoacyl-tRNA, prote binding; 1.90A {Streptomyces noursei}
Probab=39.07 E-value=52 Score=30.53 Aligned_cols=84 Identities=14% Similarity=0.156 Sum_probs=59.8
Q ss_pred CCceEEEeeCCCCcchhhhHHHHHHHHHHHhccC-cEEEEEeccceecC----CCCHHHHHHHH--------HHHHHHHH
Q 018259 77 VKKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSY-ETLFFIVDLHAITL----PYDTQQLSKAT--------RETAAIYL 143 (359)
Q Consensus 77 ~~~~i~sGi~PTG~lHLGnyig~i~~~~~lQ~~~-~~~i~IADlhA~t~----~~~~~~l~~~~--------~~~~~~~l 143 (359)
+...++.||-|=-.-|=+.++-.+..| .+..+ +|-|+++|.+.--+ ..++.+.++.+ +.+...|.
T Consensus 28 ~g~HallGVSpgNsyFs~drl~~li~W--a~~~F~~vdVli~D~~~~~tl~A~G~~~~~A~rKarr~~~~~r~~i~ral~ 105 (247)
T 3oqv_A 28 RGEHALIGISAGNSYFSQKNTVMLLQW--AGQRFERTDVVYVDTHIDEMLIADGRSAQEAERSVKRTLKDLRRRLRRSLE 105 (247)
T ss_dssp CEEEEEEEEESSCTTCCHHHHHHHHHH--HHHHEEEEEEEEECSSHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCeEEEEeCCCCcccCHHHHHHHHHH--HHccCCceEEEeCChHHhhhhhhcCCChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356899999999888999999888899 46666 47799999954321 34443333222 34456677
Q ss_pred HcCcCCCccEEEEccCcch
Q 018259 144 ACGIDNSKASVFVQSHVRA 162 (359)
Q Consensus 144 A~GlDp~kt~i~~qS~~~~ 162 (359)
++|.+.++..+..=||+..
T Consensus 106 ~~~~~~~~~rv~~~Sd~~~ 124 (247)
T 3oqv_A 106 SVGDHAERFRVRSLSELQE 124 (247)
T ss_dssp HHCTTGGGEEEEEHHHHTT
T ss_pred HhCCCccCceeeeHHHhhC
Confidence 8899988877777788653
No 92
>1f7u_A Arginyl-tRNA synthetase; RNA-protein complex, aminoacylation; HET: PSU 1MG 2MG H2U M2G 5MC 5MU 1MA ARG; 2.20A {Saccharomyces cerevisiae} SCOP: a.27.1.1 c.26.1.1 d.67.2.1 PDB: 1bs2_A* 1f7v_A*
Probab=34.99 E-value=17 Score=37.90 Aligned_cols=26 Identities=15% Similarity=0.166 Sum_probs=21.5
Q ss_pred ccceee--cccchHHHHHHHHHHHHHhh
Q 018259 216 QSDFVP--VGEDQKQHLELTRELAERVN 241 (359)
Q Consensus 216 ~adivp--vG~DQ~~hieLaRdia~k~n 241 (359)
+.|.+. +|.||..|+.-...+++.++
T Consensus 363 ~~d~~IyV~g~~q~~~f~q~~~~~~~lG 390 (607)
T 1f7u_A 363 HFDKMIYVIASQQDLHAAQFFEILKQMG 390 (607)
T ss_dssp CCSEEEEECCGGGHHHHHHHHHHHHHTT
T ss_pred CCCcEEEEEcChHhhHHHHHHHHHHHcC
Confidence 455555 99999999999888888776
No 93
>1rqg_A Methionyl-tRNA synthetase; translation, dimerization, ligase; 2.90A {Pyrococcus abyssi} SCOP: a.27.1.1 c.26.1.1 g.41.1.1
Probab=30.74 E-value=8.3 Score=40.86 Aligned_cols=43 Identities=19% Similarity=0.255 Sum_probs=26.9
Q ss_pred cCCceecCCCCcccccCCCCCCcCCCCCCCCCCeeecCC-----CHHHHHHHhhhc
Q 018259 261 KVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLD-----PKDVIANKIKRC 311 (359)
Q Consensus 261 ~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~~s~I~L~D-----~p~~I~kKI~rA 311 (359)
+.|..++.. .+|.. +| +|||||. +|.|...| .++.++--+.+.
T Consensus 327 ~~Pk~v~~h--G~v~~--~G-~KMSKS~---GNvV~p~d~i~~ygaDalR~~ll~~ 374 (722)
T 1rqg_A 327 NLPYDIPAN--EYLTL--EG-KKFSTSR---NWAIWVHEFLDVFPADYLRYYLTTI 374 (722)
T ss_dssp CCCSBCCEE--CCEEE--TT-EECBTTT---TBSCBHHHHTTTSCHHHHHHHHHHT
T ss_pred CCCCEEEEe--eeEEe--CC-eeeeeeC---CCcCCHHHHHHhcCchHHHHHHHhc
Confidence 456544431 23332 66 7999997 78887654 667776666654
Done!