RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 018259
(359 letters)
>3n9i_A Tryptophanyl-tRNA synthetase; tryptophan-tRNA ligase, csgid,
structural genomics, niaid, center for structural
genomics infectious diseases; 1.95A {Yersinia pestis}
Length = 346
Score = 483 bits (1245), Expect = e-172
Identities = 135/298 (45%), Positives = 185/298 (62%), Gaps = 15/298 (5%)
Query: 64 LSEPTAPVASSSSVKKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAIT 123
+SEP + S K + SG QP+G + +GNY+GA++ W+ +Q+ Y+ ++ IVDLHAIT
Sbjct: 1 MSEPMVLSKPTVSSKPIVFSGAQPSGELTIGNYMGALRQWVQMQDDYDCIYCIVDLHAIT 60
Query: 124 LPYDTQQLSKATRETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMI 183
D L K T +T A+YLACGID K+++FVQSHV H +L W L+ T G L++M
Sbjct: 61 ARQDPALLRKRTLDTLALYLACGIDPKKSTIFVQSHVPEHSQLSWALNCYTYFGELSRMT 120
Query: 184 QFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYL 243
QFK+KS + EN+ L YPVLMA+DILLYQ++ VPVGEDQKQHLEL+R++A R N L
Sbjct: 121 QFKDKSAR-YAENINAGLFDYPVLMAADILLYQTNQVPVGEDQKQHLELSRDIASRFNNL 179
Query: 244 YGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDV 303
YG IFK+PEP IP AGARVMSL D KMSKS + + I LL+
Sbjct: 180 YGD------------IFKIPEPFIPKAGARVMSLQDPTKKMSKSDDNRNNVIELLEDPKS 227
Query: 304 IANKIKRCKTDSSA--GLEFDNLERPECNNLLSIYQLISGKTKGEVAEECQNMNWGSL 359
+ KIKR TDS + +D ++ +NLL I ++G++ E+ + +G L
Sbjct: 228 VVKKIKRAMTDSDEPALIRYDVEKKAGVSNLLDILSGVTGQSIPELEAQFTGQMYGHL 285
>3prh_A Tryptophanyl-tRNA synthetase; TRPRS, protein biosynthesis,
translation, class I tRNA synth rossman fold, high
motif, KMSKS motif; 2.80A {Bacillus subtilis}
Length = 388
Score = 481 bits (1239), Expect = e-171
Identities = 134/288 (46%), Positives = 177/288 (61%), Gaps = 14/288 (4%)
Query: 72 ASSSSVKKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQL 131
++K+ I SG+QP+GS+ LGNY+GA+K ++ LQ+ Y + F IVD HAIT+P D +L
Sbjct: 29 IDPFTMKQTIFSGIQPSGSVTLGNYIGAMKQFVELQHDYNSYFCIVDQHAITVPQDRLEL 88
Query: 132 SKATRETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHK 191
K R AA+YLA G+D KA++F+QS V AH + W++ IG L +M QFK+KS
Sbjct: 89 RKNIRNLAALYLAVGLDPEKATLFIQSEVPAHAQAGWMMQCVAYIGELERMTQFKDKS-- 146
Query: 192 AGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKK 251
G E V LLTYP LMA+DILLY +D VP GEDQKQHLELTR LAER N Y
Sbjct: 147 KGNEAVVSGLLTYPPLMAADILLYGTDLVPPGEDQKQHLELTRNLAERFNKKYND----- 201
Query: 252 LGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRC 311
IF +PE IP GAR+MSL D L KMSKS P+ ++ I LLD + KIK
Sbjct: 202 -------IFTIPEVKIPKVGARIMSLNDPLKKMSKSDPNQKAYITLLDEPKQLEKKIKSA 254
Query: 312 KTDSSAGLEFDNLERPECNNLLSIYQLISGKTKGEVAEECQNMNWGSL 359
TDS ++FD +P +NLL+IY ++ T E+ + + +G
Sbjct: 255 VTDSEGIVKFDKENKPGVSNLLTIYSILGNTTIEELEAKYEGKGYGEF 302
>1i6k_A TRPRS, tryptophanyl-tRNA synthetase; class I tRNA synthetase, AARS,
induced FIT, ligase; HET: TYM; 1.72A {Geobacillus
stearothermophilus} SCOP: c.26.1.1 PDB: 1i6l_A* 1i6m_A*
1m83_A* 1mau_A* 1maw_A* 1mb2_A* 2ov4_A* 3fhj_A* 3fi0_A*
1d2r_A 3u1v_A
Length = 328
Score = 478 bits (1233), Expect = e-171
Identities = 133/281 (47%), Positives = 176/281 (62%), Gaps = 14/281 (4%)
Query: 79 KRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRET 138
K I SG+QP+G I +GNY+GA++ ++ LQ+ Y F IVD HAIT+ D +L + R
Sbjct: 2 KTIFSGIQPSGVITIGNYIGALRQFVELQHEYNCYFCIVDQHAITVWQDPHELRQNIRRL 61
Query: 139 AAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVG 198
AA+YLA GID ++A++F+QS V AH + W+L IG L +M QFKEKS AG E V
Sbjct: 62 AALYLAVGIDPTQATLFIQSEVPAHAQAAWMLQCIVYIGELERMTQFKEKS--AGKEAVS 119
Query: 199 VALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGA 258
LLTYP LMA+DILLY +D VPVGEDQKQH+ELTR+LAER N Y G
Sbjct: 120 AGLLTYPPLMAADILLYNTDIVPVGEDQKQHIELTRDLAERFNKRY------------GE 167
Query: 259 IFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRCKTDSSAG 318
+F +PE IP GAR+MSL D KMSKS P+ ++ I LLD I KIK TDS
Sbjct: 168 LFTIPEARIPKVGARIMSLVDPTKKMSKSDPNPKAYITLLDDAKTIEKKIKSAVTDSEGT 227
Query: 319 LEFDNLERPECNNLLSIYQLISGKTKGEVAEECQNMNWGSL 359
+ +D +P +NLL+IY +SG++ E+ + + +G
Sbjct: 228 IRYDKEAKPGISNLLNIYSTLSGQSIEELERQYEGKGYGVF 268
>3sz3_A Tryptophanyl-tRNA synthetase; structural genomics, center for
structural genomics of infec diseases, csgid, rossmann
fold; HET: TRP; 1.50A {Vibrio cholerae o1 biovar el tor}
Length = 341
Score = 477 bits (1229), Expect = e-170
Identities = 121/290 (41%), Positives = 174/290 (60%), Gaps = 13/290 (4%)
Query: 73 SSSSVKKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLS 132
S++ K ++SGVQP+G + +GNYLGA++ W +Q+ Y+ + +VDLHAIT+ D Q L
Sbjct: 1 SNAMSKPIVLSGVQPSGELSIGNYLGALRQWQQMQDDYDCQYCVVDLHAITVRQDPQALH 60
Query: 133 KATRETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKA 192
+AT + AI LA G+D K+++FVQSHV H +L W+L+ T +G L++M QFK+KS +
Sbjct: 61 EATLDALAICLAVGVDPKKSTLFVQSHVPEHAQLGWVLNCYTQMGELSRMTQFKDKSAR- 119
Query: 193 GGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKL 252
+V L YPVLMA+DILLY + VPVG DQKQHLEL R++A R N +Y +
Sbjct: 120 YANDVNAGLFGYPVLMAADILLYGAHQVPVGSDQKQHLELARDIATRFNNIYSPEQ---- 175
Query: 253 GGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRCK 312
IF +PEP IP ARVMSL D KMSKS + ++ I LL+ I KI + +
Sbjct: 176 -----PIFTIPEPYIPTVNARVMSLQDATKKMSKSDDNRKNVITLLEDPKSIIKKINKAQ 230
Query: 313 TDSSAGLE--FDNLERPECNNLLSIYQLISGKTKGEVAEECQNM-NWGSL 359
TD+ +D + NL+ +Y +GKT E+ + + +G
Sbjct: 231 TDAETPPRIAYDVENKAGIANLMGLYSAATGKTFAEIEAQYAGVEMYGPF 280
>2yy5_A Tryptophanyl-tRNA synthetase; aminoaccyl tRNA synthetase,
structural genomics, NPPSFA; HET: WSA; 2.55A {Mycoplasma
pneumoniae}
Length = 348
Score = 469 bits (1208), Expect = e-167
Identities = 102/297 (34%), Positives = 156/297 (52%), Gaps = 26/297 (8%)
Query: 77 VKKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATR 136
+ KR ++G+Q +G HLGNYLG +++ I LQ + F+ DLH+IT+ + Q L +
Sbjct: 3 MMKRALTGIQASGKQHLGNYLGVMQSLIELQEQCQLFVFVADLHSITVDFQPQALKQNNF 62
Query: 137 ETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHK----- 191
+ LA G+D KA +F+QS + H + +L+ + +G L +M QFK K +
Sbjct: 63 DLVRTLLAVGLDPQKACLFLQSDLLEHSMMGYLMMVQSNLGELQRMTQFKAKKAEQTRNP 122
Query: 192 AGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKK 251
G N+ LLTYP LMA DILLYQ D VPVG DQKQHLELTR+LA+R+ +
Sbjct: 123 NGTLNIPTGLLTYPALMAGDILLYQPDIVPVGNDQKQHLELTRDLAQRIQKKF------- 175
Query: 252 LGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRC 311
++P+ + R+M L D KMSKS+ + I L DPK+V+ KI++
Sbjct: 176 -----KLKLRLPQFVQNKDTNRIMDLFDPTKKMSKSSKNQNGVIYLDDPKEVVVKKIRQA 230
Query: 312 KTDSSAGLEFDNLERPECNNLLSIYQLISGKT---------KGEVAEECQNMNWGSL 359
TDS + F + +P N+L+I + + + ++ ++ L
Sbjct: 231 TTDSFNKIRFASKTQPGVTNMLTILKALLKEPVNQSLTNQLGNDLEAYFSTKSYLDL 287
>3tzl_A Tryptophanyl-tRNA synthetase; structural genomics, center for
structural genomics of infec diseases, csgid, alpha-beta
structure; HET: ADP TRP; 2.15A {Campylobacter jejuni
subsp} PDB: 3m5w_A*
Length = 322
Score = 435 bits (1121), Expect = e-154
Identities = 95/284 (33%), Positives = 156/284 (54%), Gaps = 19/284 (6%)
Query: 76 SVKKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKAT 135
S R+++G+QP+G +H+GNY GAIK + Q + FI + HA+T D ++L + +
Sbjct: 1 SNAMRVLTGLQPSGDLHIGNYFGAIKQMVDAQEKSQMFMFIANYHAMTSSQDGEKLKQNS 60
Query: 136 RETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGE 195
+ AA +L+ GID K+ ++QS V+ +EL W+LS TP+G L + +K+K K G
Sbjct: 61 LKAAAAFLSLGIDPQKSVFWLQSDVKEVMELYWILSQFTPMGLLERAHSYKDKVAK--GL 118
Query: 196 NVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGR 255
+ L +YPVLMA+DILL+ + VPVG+DQ QH+E+ R++A +VN +
Sbjct: 119 SASHGLFSYPVLMAADILLFDTRIVPVGKDQIQHVEIARDIALKVNNEW----------- 167
Query: 256 GGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRCKTDS 315
G IF +PE + A V+ DG +KMSK S Q+ I++ + + +I TDS
Sbjct: 168 -GEIFTLPEARVNEEVAVVVGT-DG-AKMSK---SYQNTIDIFSSEKTLKKQISSIVTDS 221
Query: 316 SAGLEFDNLERPECNNLLSIYQLISGKTKGEVAEECQNMNWGSL 359
+A + + E + ++ SG+ + ++ E +G
Sbjct: 222 TALEDPKDHENCNIFKIAKLFLDESGQKELQIRYEKGGEGYGHF 265
>2el7_A Tryptophanyl-tRNA synthetase; aminoacyl-tRNA synthetase,
translation, structural GEN NPPSFA; 2.50A {Thermus
thermophilus}
Length = 337
Score = 431 bits (1112), Expect = e-152
Identities = 118/284 (41%), Positives = 164/284 (57%), Gaps = 24/284 (8%)
Query: 79 KRIVSGVQPTGSIHLGNYLGAIKNWIALQNSY--ETLFFIVDLHAITLPY--DTQQLSKA 134
KR++SG+QP+G IH+GNYLGAIK W+A+ + F IVD HA+T P D L++
Sbjct: 2 KRVLSGIQPSGEIHIGNYLGAIKQWVAIGEKLGRDAFFCIVDYHALTNPLAYDPSTLAQR 61
Query: 135 TRETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGG 194
T E A + +A G+D K ++FVQSHV H EL W+ ++ TP+G L +M QFK+K+ K
Sbjct: 62 TFEAALVNIAAGLDPEKVTLFVQSHVPEHTELSWVFTTLTPLGDLTRMTQFKDKASK--Q 119
Query: 195 ENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGG 254
E V LL YPVL A+DIL+Y++D VPVGEDQ QH+ELTRE+A R N+L+
Sbjct: 120 ETVWSGLLMYPVLQAADILIYKADTVPVGEDQVQHIELTREIARRFNHLF---------- 169
Query: 255 RGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRCKTD 314
G F P+ L+ P RV + DG +KMSKS + I LL+P++ I KI+ D
Sbjct: 170 --GETFPEPQALLNPEAPRVPGI-DGKAKMSKSLG---NTIGLLEPEESIWQKIQHLPDD 223
Query: 315 SSAGLEFDNLERPECNNLLSIYQLISGKTKGE-VAEECQNMNWG 357
+ + PE L + + K E + EE + G
Sbjct: 224 -PQRIRLSDPGDPERTILFTYLSYFAPKDLVEALKEEYRKAGVG 266
>1yi8_B Tryptophanyl-tRNA synthetase; ligase; HET: TRP; 2.10A {Deinococcus
radiodurans} PDB: 1yia_B* 1yid_B* 2a4m_A*
Length = 351
Score = 390 bits (1005), Expect = e-136
Identities = 83/303 (27%), Positives = 137/303 (45%), Gaps = 22/303 (7%)
Query: 59 YCNVSLSEPTAPVASSSSVKKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVD 118
+ ++ + T P +++ + R+++G +PTG++HLG+ G+++N + LQ+ E + D
Sbjct: 3 FVDLEVPTMTTPTPAATPARPRVLTGDRPTGALHLGHLAGSLQNRVRLQDEAELFVLLAD 62
Query: 119 LHAITLPYD-TQQLSKATRETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIG 177
+ A+T +D +Q+ + A YLA G+D K + VQS V EL + +
Sbjct: 63 VQALTDHFDRPEQVRENVLAVALDYLAAGLDPQKTTCVVQSAVPELAELTVYFLNLVTVS 122
Query: 178 WLNKMIQFKEKSHKAG-GENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTREL 236
L + K + + G GE V YPV A+DI + + VPVG+DQ LE TRE+
Sbjct: 123 HLRQNPTVKAEIAQKGYGERVPAGFFVYPVSQAADIAAFGATLVPVGDDQLPMLEQTREI 182
Query: 237 AERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRIN 296
R N LY + P+ + R+ L DG +KMSKS + I
Sbjct: 183 VRRFNALY------------APVLAEPQAQLSRV-PRLPGL-DGQAKMSKSLG---NAIA 225
Query: 297 LLDPKDVIANKIKRCKTDSSAGLEFDNLERPECNNLLSIYQLISGKTKG--EVAEECQNM 354
L D D +A K+ TD L + R E N + + + ++ +
Sbjct: 226 LGDSADEVARKVMGMYTD-PGHLRASDPGRVEGNPVFTFLDAFDPDPARVQALKDQYRAG 284
Query: 355 NWG 357
G
Sbjct: 285 GLG 287
>2g36_A Tryptophanyl-tRNA synthetase; TM0492, structural genomics, joint
center for struc genomics, JCSG, protein structure
initiative, PSI, ligase; HET: TRP; 2.50A {Thermotoga
maritima}
Length = 340
Score = 372 bits (958), Expect = e-129
Identities = 100/285 (35%), Positives = 147/285 (51%), Gaps = 24/285 (8%)
Query: 78 KKRIVSGVQPTGSIHLGNYLGAIKNWIALQNS-YETLFFIVDLHAITLPY-DTQQLSKAT 135
RI+SG++PTG +H+G+ +GA++NW+ LQ E +F+ D HA+T Y D +L + T
Sbjct: 12 HMRILSGMRPTGKLHIGHLVGALENWVKLQEEGNECFYFVADWHALTTHYDDVSKLKEYT 71
Query: 136 RETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAG-G 194
R+ +LACGID K+ +FVQS V+ H EL L S + L ++ +KE +
Sbjct: 72 RDLVRGFLACGIDPEKSVIFVQSGVKEHAELALLFSMIVSVSRLERVPTYKEIKSELNYK 131
Query: 195 ENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGG 254
+ L YPVL A+DIL+Y+++ VPVGEDQ H+ELTRE+A R NYLY
Sbjct: 132 DLSTAGFLIYPVLQAADILIYKAEGVPVGEDQVYHIELTREIARRFNYLY---------- 181
Query: 255 RGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRCKTD 314
+F PE ++ ++ DG KMSK S + INL + + I R TD
Sbjct: 182 --DEVFPEPEAILSRV-PKLPGT-DG-RKMSK---SYGNIINLEISEKELEQTILRMMTD 233
Query: 315 SSAGLEFDNLERPECNNLLSIYQLIS--GKTKGEVAEECQNMNWG 357
A + + PE + +Q + V E C + G
Sbjct: 234 -PARVRRSDPGNPENCPVWKYHQAFDISEEESKWVWEGCTTASIG 277
>3p0j_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase,
AARS, tyrrs, pseudod translation, ATP-binding,
nucleotide-binding, ligase; HET: TYE; 2.89A {Leishmania
major} PDB: 3p0i_A* 3p0h_A*
Length = 690
Score = 278 bits (713), Expect = 3e-88
Identities = 51/293 (17%), Positives = 105/293 (35%), Gaps = 34/293 (11%)
Query: 78 KKRIVSGVQPTGSIHLGNYLGAIKNWIALQNS-YETLFFIVDLHAIT---LPYDTQQLSK 133
R G +P+G +H+ + N + E +F++ D A+ + + +++
Sbjct: 40 LIRCYDGFEPSGRMHIAQGIFKAVNVNKCTAAGCEFVFWVADWFALMNDKVGGELEKIRI 99
Query: 134 ATRETAAIYLACGIDNSKAS-VFVQSHVRAHVELMWLLS-SATPIGWLNKMIQFKEKSHK 191
R ++ A G+D K ++ + +H + W + + ++ + K
Sbjct: 100 VGRYLIEVWKAAGMDMDKVLFLWSSEEITSHADTYWRMVLDIGRQNTIARIKKCCTIMGK 159
Query: 192 AGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKK 251
+ A + YP++ DI ++D +G DQ++ L RE + +
Sbjct: 160 -TEGTLTAAQVLYPLMQCCDIFFLKADICQLGLDQRKVNMLAREYCDLIGRKLK------ 212
Query: 252 LGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRC 311
P L + L G +KMSKS P S I + D ++ +A KI++
Sbjct: 213 -----------PVILSHH---MLAGLKQGQAKMSKSDPD--SAIFMEDTEEDVARKIRQA 256
Query: 312 KTD-----SSAGLEFDNLERPECNNLLSIYQLISGKTKGEVAEECQNMNWGSL 359
+SA + + N + Y + A + +
Sbjct: 257 YCPRVKQSASAITDDGAPVATDDRNPVLDYFQCVVYARPGAAATIDGTTYATY 309
Score = 196 bits (501), Expect = 2e-57
Identities = 38/306 (12%), Positives = 82/306 (26%), Gaps = 50/306 (16%)
Query: 51 HNGCGFRCYCNVSLSEPTAPVASSSSVKKRIVSGVQPTGSIHLGN-YLGAIKNWIALQNS 109
+R TA A+ + + + + + K++IA
Sbjct: 356 EAVKSYRKDGATLPLAETALPAAPAKPHACMWMPALLKVPLDVAEGMIKVTKDFIAAHPE 415
Query: 110 YETLFFIVDLHAIT---LPYDTQQLSKATRETAAIYLACGIDNSKASVFVQSHVRAHVEL 166
+ D A+ + + +S A + A+ A G+ +S V + + +
Sbjct: 416 GTVTLVLPDWSAVASDEITGVEKDISAALQVNCALLKAYGLPSSVKIVTENEVILGNCDD 475
Query: 167 MWLLS-SATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGED 225
W+ L+ + + GGE + ++ + L+ V
Sbjct: 476 FWVSVIGIARKNLLSHVEELY------GGEVRNAGQVIAALMRVATALMLSVSHVISTSL 529
Query: 226 QKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMS 285
RE + + R+ +L + +
Sbjct: 530 DGHINAFAREYTKERI-----------------------DCVQTLEGRIPALHRPGAAPA 566
Query: 286 KSAPSDQSRINLLDPKDVIANKIKR--C--KTDSSAGLEFD----------NLERPECNN 331
+ L D I KIK+ +++ + ++ER E N
Sbjct: 567 VLGAD--DVLYLDDNDMDIRRKIKKAYSAPNEEANPVISVAQHLLAQHGALSIERGEANG 624
Query: 332 LLSIYQ 337
Y
Sbjct: 625 GNVSYN 630
>2cyc_A Tyrosyl-tRNA synthetase; tyrosine, tyrrs, aminoacylation,
structural genomics; HET: TYR; 2.20A {Pyrococcus
horikoshii}
Length = 375
Score = 265 bits (680), Expect = 8e-87
Identities = 49/305 (16%), Positives = 95/305 (31%), Gaps = 27/305 (8%)
Query: 78 KKRIVSGVQPTGSIHLGNYLGAIKNWIALQNS-YETLFFIVDLHAITLPYDTQQLSKATR 136
+ G + +G IHLG L A Q + +T F+ D H+ L
Sbjct: 33 PLQHYIGFEISGYIHLGTGLMAGAKIADFQKAGIKTRVFLADWHSWINDKLGGDLEVIQE 92
Query: 137 ET--------AAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEK 188
G D K + S + + + + L+++++
Sbjct: 93 VALKYFKVGMEKSIEVMGGDPKKVEFVLASEILEKGDYWQTVIDISKNVTLSRVMRSITI 152
Query: 189 SHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRK 248
+ GE + A L YP++ +DI G DQ++ + E+A+++ Y +
Sbjct: 153 MGRQMGEAIDFAKLIYPMMQVADIFYQGVTIAHAGMDQRKAHVIAIEVAQKLRYHPIVHE 212
Query: 249 WKKLGGRGGAIFKVP----EPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVI 304
+KL + P P KMSKS P S + + D + I
Sbjct: 213 GEKLKPVAVHHHLLLGLQEPPKWPIESEEEFKEIKAQMKMSKSKPY--SAVFIHDSPEEI 270
Query: 305 ANKIKRCKTDSS------------AGLEFDNLERPECNNLLSIYQLISGKTKGEVAEECQ 352
K+++ + + + + ++ T E+ +
Sbjct: 271 RQKLRKAFCPAREVRYNPVLDWVEYIIFREEPTEFTVHRPAKFGGDVTYTTFEELKRDFA 330
Query: 353 NMNWG 357
Sbjct: 331 EGKLH 335
>2j5b_A Tyrosyl-tRNA synthetase; ligase, protein biosynthesis, ATP-binding;
HET: TYE; 2.20A {Acanthamoeba polyphaga mimivirus}
Length = 348
Score = 252 bits (645), Expect = 6e-82
Identities = 54/300 (18%), Positives = 105/300 (35%), Gaps = 48/300 (16%)
Query: 78 KKRIVSGVQPTGSIHLGNYLGAIKNWIALQNS-YETLFFIVDLHA---ITLPYDTQQLSK 133
+G +P+G IH+ L + N + + + +I D A + + D ++ +
Sbjct: 40 IFTAYNGFEPSGRIHIAQALITVMNTNNMIECGGQMIIYIADWFAKMNLKMNGDINKIRE 99
Query: 134 ATRETAAIYLACGIDNSKASVFVQSHVR----AHVELMWLLSSATPIGWLNKMIQFKEKS 189
R ++ ACGI+ S +++E M ++ + I + + Q ++
Sbjct: 100 LGRYFIEVFKACGINLDGTRFIWASEFIASNPSYIERMLDIAEFSTISRVKRCCQIMGRN 159
Query: 190 HKAGGENVGVALLTYPVLMASDILLYQS---DFVPVGEDQKQHLELTRELAERVNYLYGG 246
+ + + + YP + A+D+ D +G DQ++ L E A
Sbjct: 160 ---ESDCLKASQIFYPCMQAADVFELVPEGIDICQLGIDQRKVNMLAIEYANDRGL---- 212
Query: 247 RKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIAN 306
+ I + +MSL+ KMSKS P I + D + ++
Sbjct: 213 -----------------KIPISLSHHMLMSLSGPKKKMSKSDPQ--GAIFMDDTEQEVSE 253
Query: 307 KIKRCKTDSS-------AGLEFDNLERPECNNLLSIYQLISGKTKGEVAEECQNMNWGSL 359
KI R +++ L NL + E+ +MN L
Sbjct: 254 KISRAYCTDETFDNPIFEYIKYLLLRWFGTLNLCG----KIYTDIESIQEDFSSMNKREL 309
>3vgj_A Tyrosyl-tRNA synthetase, putative; tyrrs, ligase; HET: YAP; 2.21A
{Plasmodium falciparum}
Length = 373
Score = 246 bits (630), Expect = 3e-79
Identities = 48/269 (17%), Positives = 97/269 (36%), Gaps = 29/269 (10%)
Query: 78 KKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSY-ETLFFIVDLHAIT---LPYDTQQLSK 133
K G +P+G +H+ L L ++ +F+I D A + D +++ K
Sbjct: 56 KLICYDGFEPSGRMHIAQGLLKSIIVNKLTSNGCTFIFWIADWFAHLNNKMSGDLKKIKK 115
Query: 134 ATRETAAIYLACGIDNSKASVFVQS-HVRAHVELMWLLS-SATPIGWLNKMIQFKEKSHK 191
++ +CG++ S + W L + +N+M + + +
Sbjct: 116 VGSYFIEVWKSCGMNMENVQFLWASEEINKKPNEYWSLVLDISRSFNINRMKRCLKIMGR 175
Query: 192 AGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKK 251
+ GE + + YP + +DI D +G DQ++ L RE +
Sbjct: 176 SEGEENYCSQILYPCMQCADIFFLNVDICQLGIDQRKVNMLAREYCDIKKI--------- 226
Query: 252 LGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRC 311
+ + + + L +G KMSKS + S I + D + + KIK+
Sbjct: 227 -----------KKKPVILSHGMLPGLLEGQEKMSKSDEN--SAIFMDDSESDVNRKIKKA 273
Query: 312 KTDSSAGLEFDNLERPECNNLLSIYQLIS 340
+E + + + + Y +
Sbjct: 274 YCP-PNVIENNPIYAYAKSIIFPSYNEFN 301
>3jxe_A Tryptophanyl-tRNA synthetase; adenosine triphosphate, rossmann
fold, crystallography, X-RAY, P. horikoshii,
aminoacyl-tRNA synthetase; HET: TYM; 3.00A {Pyrococcus
horikoshii}
Length = 392
Score = 213 bits (545), Expect = 2e-66
Identities = 45/291 (15%), Positives = 91/291 (31%), Gaps = 41/291 (14%)
Query: 78 KKRIVSGVQPTGSIHLGNYLGAIKN-WIALQNSYETLFFIVDLHAITLPYDT--QQLSKA 134
+ +G P+G +H+G+ + W+ + I D + +
Sbjct: 73 GFFLYTGRGPSGPMHIGHIIPFFATKWLQEKFGVNLYIQITDDEKFLFKENLTFDDTKRW 132
Query: 135 TRETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGG 194
+ +A G D K +F S E+ ++ + F E+S
Sbjct: 133 AYDNILDIIAVGFDPDKTFIFQNSEFTKIYEMAIPIAKKINFSMAKAVFGFTEQSK---- 188
Query: 195 ENVGVALLTYPVLMASDILLYQ-SDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLG 253
+ ++ +P + + + +P DQ + L R+ AE + Y
Sbjct: 189 ----IGMIFFPAIQIAPTFFERKRCLIPAAIDQDPYWRLQRDFAESLGYYKT-------- 236
Query: 254 GRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRCKT 313
+ +P SLT KMS S ++ I L D + + K+ +
Sbjct: 237 ------AALHSKFVP-------SLTSLSGKMSAS--KPETAIYLTDSPEDVEKKVWKFTL 281
Query: 314 DSSAGLEFDNLE---RPECNNLLSIYQLISGKTKGEVAE---ECQNMNWGS 358
+ E PE + ++ + ++ E C+N
Sbjct: 282 TGGRPTLKEQREKGGEPEKCVVFKWLEIFFEEDDKKLKERYYACKNGELTC 332
>1r6u_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann
fold catalytic domain, AN recognition domain, bound
Trp-AMP, ligase; HET: TYM; 2.00A {Homo sapiens} SCOP:
c.26.1.1 PDB: 1ulh_A 2dr2_A* 2ake_A* 1o5t_A
Length = 437
Score = 154 bits (390), Expect = 3e-43
Identities = 44/251 (17%), Positives = 84/251 (33%), Gaps = 41/251 (16%)
Query: 78 KKRIVSGVQPTG-SIHLGNYLGAIKN-WIALQNSYETLFFIVDLHA-ITLPYDTQQLSKA 134
+ +G P+ ++H+G+ + I W+ + + + D + Q
Sbjct: 108 PFYLYTGRGPSSEAMHVGHLIPFIFTKWLQDVFNVPLVIQMTDDEKYLWKDLTLDQAYGD 167
Query: 135 TRETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGG 194
E A +ACG D +K F+ S + + I Q K
Sbjct: 168 AVENAKDIIACGFDINK--TFIFSDLDYMGMSSGFYKNVVKIQKHVTFNQVKGI--FGFT 223
Query: 195 ENVGVALLTYPVLMASDILLYQSDF-----------VPVGEDQKQHLELTRELAERVNYL 243
++ + +++P + A+ +P DQ + +TR++A R+ Y
Sbjct: 224 DSDCIGKISFPAIQAAPSFSNSFPQIFRDRTDIQCLIPCAIDQDPYFRMTRDVAPRIGY- 282
Query: 244 YGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDV 303
P+P + + +L +KMS S P+ S I L D
Sbjct: 283 -------------------PKPALLHST-FFPALQGAQTKMSASDPN--SSIFLTDTAKQ 320
Query: 304 IANKIKRCKTD 314
I K+ +
Sbjct: 321 IKTKVNKHAFS 331
>1r6t_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann
fold catalytical domain, recognition domain, bound
Trp-AMP, ligase; HET: TYM; 2.10A {Homo sapiens} SCOP:
a.16.1.3 c.26.1.1 PDB: 2azx_A* 2quh_A* 2qui_A* 2quj_A*
2quk_A
Length = 477
Score = 152 bits (384), Expect = 4e-42
Identities = 43/252 (17%), Positives = 86/252 (34%), Gaps = 43/252 (17%)
Query: 78 KKRIVSGVQPTG-SIHLGNYLGAIKN-WIALQNSYETLFFIVDLHA-ITLPYDTQQLSKA 134
+ +G P+ ++H+G+ + I W+ + + + D + Q
Sbjct: 155 PFYLYTGRGPSSEAMHVGHLIPFIFTKWLQDVFNVPLVIQMTDDEKYLWKDLTLDQAYGD 214
Query: 135 TRETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAG- 193
E A +ACG D +K +F + + + K + F + G
Sbjct: 215 AVENAKDIIACGFDINKTFIFSDLDYMGMSSGFY-----KNVVKIQKHVTFNQVKGIFGF 269
Query: 194 GENVGVALLTYPVLMASDILLYQSDF-----------VPVGEDQKQHLELTRELAERVNY 242
++ + +++P + A+ +P DQ + +TR++A R+ Y
Sbjct: 270 TDSDCIGKISFPAIQAAPSFSNSFPQIFRDRTDIQCLIPCAIDQDPYFRMTRDVAPRIGY 329
Query: 243 LYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKD 302
P+P + + +L +KMS S P+ S I L D
Sbjct: 330 --------------------PKPALLHST-FFPALQGAQTKMSASDPN--SSIFLTDTAK 366
Query: 303 VIANKIKRCKTD 314
I K+ +
Sbjct: 367 QIKTKVNKHAFS 378
>3i05_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, ATP-binding,
aminoacyl-tRNA synthetase, LIG nucleotide-binding,
protein biosynthesis; 2.80A {Trypanosoma brucei}
Length = 395
Score = 146 bits (369), Expect = 1e-40
Identities = 41/302 (13%), Positives = 88/302 (29%), Gaps = 53/302 (17%)
Query: 78 KKRIVSGVQPTG-SIHLGNYLGAIKN-WIALQNSYETLFFIVDLHAITL-PYDTQQLSKA 134
+ +G P+ S+H+G+ + + W+ + + D +Q+
Sbjct: 78 PFYLYTGRGPSSESMHMGHLIPFMFTKWLQDSFRVPLVIQMTDDEKFYFRNIPMEQVEAM 137
Query: 135 TRETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAG- 193
T E +A G D +F ++ M+ + + + + G
Sbjct: 138 TTENIKDIIAMGFDPELTFIFRDFD---YMGCMY-----RTVAKIERAFTASQVRGCFGF 189
Query: 194 GENVGVALLTYPVLMASDILLYQSD------------FVPVGEDQKQHLELTRELAERVN 241
+P + A+ +P DQ + LTR++A R+
Sbjct: 190 AMEDNCGRWMFPAIQAAPSFSAAFPHIFPPSMGNVFCLIPQAIDQDPYFRLTRDIAPRLG 249
Query: 242 YLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPK 301
YL P + L+ KMS S + + L D +
Sbjct: 250 YLK------------------PAVIHSK---FFPGLSGPKGKMSS---SSGTAVLLTDTE 285
Query: 302 DVIANKIKRCKTDSSAGLEFDNLE---RPECNNLLSIYQLI--SGKTKGEVAEECQNMNW 356
++ +KI + + ++ E + + + V +E
Sbjct: 286 KMVKDKINKHAFSGGGATKQEHFLLGANVEVDVPIQWLSFFLEDDEELARVKKEYMLGRI 345
Query: 357 GS 358
+
Sbjct: 346 MT 347
>2ip1_A Tryptophanyl-tRNA synthetase; rossmann fold, structural genomics,
PSI-2, protein structure initiative; HET: PG4; 1.80A
{Saccharomyces cerevisiae} PDB: 3kt0_A* 3kt3_A* 3kt6_A*
3kt8_A*
Length = 432
Score = 145 bits (368), Expect = 4e-40
Identities = 38/298 (12%), Positives = 83/298 (27%), Gaps = 53/298 (17%)
Query: 78 KKRIVSGVQPTG-SIHLGNYLGAIKN-WIALQNSYETLFFIVDLHAITLPYD--TQQLSK 133
+ +G P+ S+HLG+ + + W+ + + D + +
Sbjct: 102 PFFLYTGRGPSSDSMHLGHMIPFVFTKWLQEVFDVPLVIELTDDEKFLFKHKLTINDVKN 161
Query: 134 ATRETAAIYLACGIDNSKASVFVQSHVRAHV--ELMWLLSSATPIGWLNKMIQFKEKSHK 191
RE A +A G D +F E + +S + F +
Sbjct: 162 FARENAKDIIAVGFDPKNTFIFSDLQYMGGAFYETVVRVSRQITGSTAKAVFGFNDSDC- 220
Query: 192 AGGENVGVALLTYPVLMASDILLYQSDF-----------VPVGEDQKQHLELTRELAERV 240
+ + + + +P DQ + + R++A+++
Sbjct: 221 -------IGKFHFASIQIATAFPSSFPNVLGLPDKTPCLIPCAIDQDPYFRVCRDVADKL 273
Query: 241 NYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDP 300
Y +P + +L +KMS S + + I + D
Sbjct: 274 KY--------------------SKPALLH-SRFFPALQGSTTKMSASDDT--TAIFMTDT 310
Query: 301 KDVIANKIKRCKTDSSAGLEFDNLE---RPECNNLLSIYQLISGKTKG--EVAEECQN 353
I KI + + E P+ + E ++ ++
Sbjct: 311 PKQIQKKINKYAFSGGQVSADLHRELGGNPDVDVAYQYLSFFKDDDVFLKECYDKYKS 368
>3hv0_A Tryptophanyl-tRNA synthetase; tRNA-ligase, ATP-binding,
aminoacyl-tRNA synthetase, ligase, nucleotide-binding;
HET: TRP; 2.42A {Cryptosporidium parvum iowa II}
Length = 393
Score = 144 bits (365), Expect = 5e-40
Identities = 42/255 (16%), Positives = 82/255 (32%), Gaps = 49/255 (19%)
Query: 78 KKRIVSGVQPTG-SIHLGNYLGAIKNWIALQNS--YETLFFIVDLHAITLPYDT--QQLS 132
+ +G P+ S+H+G+ + + LQ++ + + D + ++
Sbjct: 74 LFYLYTGRGPSSESLHVGHLVPFLFTKY-LQDTFKVPLVIQLTDDEKFIFKSNLTLEETH 132
Query: 133 KATRETAAIYLACGIDNSKASVFVQSH-VRAHVELMWLLSSATPIGWLNKMIQFKEKSHK 191
E +ACG D +F + + + + + FK+ +
Sbjct: 133 NYAYENMKDIIACGFDPELTFIFTNLEYIAELYPDILRIEKKISCSQIKSIFGFKDSCN- 191
Query: 192 AGGENVGVALLTYPVLMASDILLYQSDF-----------VPVGEDQKQHLELTRELAERV 240
V +P + A+ VP DQ + + R++A R+
Sbjct: 192 -------VGKFAFPAVQAAPAFSSSFPHIFGGRTDIHCLVPHAIDQDPYFRMVRDVAPRL 244
Query: 241 NYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDP 300
YL P + + SL +KMS S + S I + D
Sbjct: 245 GYLK------------------PSSIHSI---FLPSLQGSQTKMSASVQN--SSIFVNDN 281
Query: 301 KDVIANKIKRCKTDS 315
++ I NKI +
Sbjct: 282 EESIRNKIMKYAFSG 296
>3hzr_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, structural genomics,
medical structural GEN pathogenic protozoa, MSGPP,
ligase; 3.00A {Entamoeba histolytica}
Length = 386
Score = 135 bits (340), Expect = 2e-36
Identities = 39/299 (13%), Positives = 87/299 (29%), Gaps = 51/299 (17%)
Query: 78 KKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPY---DTQQLSKA 134
I P + L Y+ LQ+++ I L I + + SK
Sbjct: 82 PTFIFIQKYPQKEVALEEYITLEFAR-YLQDAFNIQVIIQILDDIKVLNREATINEASKM 140
Query: 135 TRETAAIYLACGIDNSKASVFVQS-HVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAG 193
+ + LA G + K ++ + + L+ AT + F+ +
Sbjct: 141 SNDLMKYILAFGFNEDKTFIYTDYQYFGKMYRTISLVEKATAYNVVQPFFNFEYSDN--- 197
Query: 194 GENVGVALLTYPVLMASDILLYQSDF---------VPVGEDQKQHLELTRELAERVNYLY 244
+ L P +M + + V Q + ++A +N+
Sbjct: 198 -----IGKLASPSIMTASMFSQSYSHFFSSPARCLVLDSIKNVQFHSIIDQIATTLNF-- 250
Query: 245 GGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVI 304
+P + +++ L G++K + + I L D +
Sbjct: 251 ------------------IQPTV--LFHKMVPLLSGVTKFDIPSD--HNSILLSDNAKQV 288
Query: 305 ANKIKRCKTDSSAGLEFDNLE---RPECNNLLSIYQLISGKTKG--EVAEECQNMNWGS 358
KI + ++ + + + + + + S +V E+ S
Sbjct: 289 ERKINKLAFSGGRNTTEEHKKLGGQCDIDVSFQLLNIFSSDNAQVKDVEEKYSKGELLS 347
>3tze_A Tryptophanyl-tRNA synthetase; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid, amino acylation; HET: TRP; 2.60A
{Encephalitozoon cuniculi}
Length = 406
Score = 132 bits (332), Expect = 3e-35
Identities = 42/249 (16%), Positives = 72/249 (28%), Gaps = 43/249 (17%)
Query: 78 KKRIVSGVQPTG-SIHLGNYLGAIKN-WIALQNSYETLFFIVDLHA-ITLPYDTQQLSKA 134
+ +G P+ ++H+G+ + + ++ + I D + +
Sbjct: 101 PFYLYTGRGPSSKTMHIGHTIPFLLCKYMQDAFKIRLVIQITDDEKFLWKSMRLEDAMAY 160
Query: 135 TRETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAG- 193
RE + G D +F H E L ++K I E G
Sbjct: 161 GRENIKDIVTLGFDPKLTYIFSNVEASHHFEENIL--------KISKTINLNEAIKVFGF 212
Query: 194 GENVGVALLTYPVLMASDILLYQSDF--------VPVGEDQKQHLELTRELAERVNYLYG 245
+ + + +P + F VP DQ L R+ A+ +
Sbjct: 213 DMSSNIGQVGFPAKEIAPCFSSSFRFIGKGAMCLVPAAVDQDPFFRLARDKAKALGEKK- 271
Query: 246 GRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIA 305
P + + L KMS S P+ S I L D +D I
Sbjct: 272 -----------------PSSIYVS---LLPDLKGVNRKMSASDPN--SSIYLDDAQDTIR 309
Query: 306 NKIKRCKTD 314
KI
Sbjct: 310 KKIIAYAYS 318
>3foc_A Tryptophanyl-tRNA synthetase; structural genomics, giardiasi
aminoacyl-tRNA synthetase, ligase; 2.09A {Giardia
lamblia atcc 50803}
Length = 451
Score = 94.5 bits (234), Expect = 1e-21
Identities = 52/278 (18%), Positives = 83/278 (29%), Gaps = 55/278 (19%)
Query: 78 KKRIVSGVQPT-GSIHLGNYLGAIKNWIALQNS--YETLFFIVDLHAITLPYDT-QQLSK 133
I +G P+ G++HLG+ L I Y + D + + ++
Sbjct: 91 PIYIYTGRGPSSGALHLGHLLPFIFTKYLQDAFKCYVVIQITDDEKFLRNRSLSYAEVDS 150
Query: 134 ATRETAAIYLACGIDNSKASVFVQSH---VRAHVELMWLLSSATPIGWLNKMIQFKEKSH 190
TRE +ACG D K +F+ S ++ L+ PI L F ++
Sbjct: 151 YTRENIKDIIACGFDPDKTFIFINSQYLSLKNRYRFSCLVDRMLPISQLRASFGFSNDAN 210
Query: 191 KAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWK 250
V +P + D +P + A+ V+ +K
Sbjct: 211 --------VGYAAFPPKQMLPVYSTYFDGLPFTRVPLPVGTGNEDAADAVSTKKASKKTP 262
Query: 251 KLGGRGGAIFKVPEPL-----------IPPAGA--------------------------- 272
K + V E + +G
Sbjct: 263 KKDAVLSPVHVVEELFPDSKRYQKAMCLIASGIEQDPYFRLARDLAPRMGHPKNAYLLGK 322
Query: 273 RVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKR 310
+ L +KMS S P+ S I L D I NKI R
Sbjct: 323 FLPGLQGSGTKMSASDPN--SAIYLTDTPAQIKNKINR 358
>2dlc_X Tyrosyl-tRNA synthetase, cytoplasmic; tyrrs, ligase-tRNA complex;
HET: 2MG OMG M2G PSU 6IA 5MC 5MU 1MA YMP; 2.40A
{Saccharomyces cerevisiae}
Length = 394
Score = 86.0 bits (213), Expect = 6e-19
Identities = 54/274 (19%), Positives = 85/274 (31%), Gaps = 56/274 (20%)
Query: 80 RIVSGVQPTGSIHLGNYLGAIKNWIALQNS-YETLFFIVDLHA----ITLPYDTQQLSKA 134
++ G PTG H G ++ K + E + DLHA + P +
Sbjct: 41 KLYWGTAPTGRPHCGYFVPMTKL-ADFLKAGCEVTVLLADLHAFLDNMKAPLEVVNYRAK 99
Query: 135 TRETAAIYL--ACGIDNSKASVFVQSHV---RAHVELMWLLSSATPIGWLNKMIQFKEKS 189
E + + + K V S + ++ LS+ + K
Sbjct: 100 YYELTIKAILRSINVPIEKLKFVVGSSYQLTPDYTMDIFRLSNIVSQNDAKRAGADVVKQ 159
Query: 190 HKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKW 249
N ++ L YP++ A D D G DQ++ L E + Y
Sbjct: 160 ----VANPLLSGLIYPLMQALDEQFLDVDCQFGGVDQRKIFVLAEENLPSLGY------- 208
Query: 250 KKLGGRGGAIFKVP----EPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIA 305
K P++P KMS S P S+I+LL+ +
Sbjct: 209 -----------KKRAHLMNPMVPG--------LAQGGKMSASDP--NSKIDLLEEPKQVK 247
Query: 306 NKIKRCKTDSSAGLEFDNLERPECNNLLSIYQLI 339
KI F + E N LLS Q +
Sbjct: 248 KKINSA---------FCSPGNVEENGLLSFVQYV 272
>2cya_A Tyrosyl-tRNA synthetase; tyrrs, aminoacylation, structural
genomics, NPPSFA, national on protein structural and
functional analyses; 2.20A {Aeropyrum pernix}
Length = 364
Score = 69.4 bits (170), Expect = 3e-13
Identities = 52/296 (17%), Positives = 101/296 (34%), Gaps = 55/296 (18%)
Query: 84 GVQPTGSIHLGNYLGAIKNWIA-LQNS-YETLFFIVDLHA-ITLPY--DTQQLSKATRET 138
G +P+G H+G + K + L + + HA I D + A R
Sbjct: 41 GYEPSGVAHIGWLVWMYK--VKDLVEAGVDFSVLEATWHAYINDKLGGDMDLIRAAARIV 98
Query: 139 AAIYLACGIDNSKASVFVQSHVRAH---VELMWLLSSATPIGWLNKMIQFKEKSHKAGGE 195
+ A G+ + + + L+ ++ + + + + + +A
Sbjct: 99 RRVMEAAGVPVERVRFVDAEELASDKDYWGLVIRVAKRASLARVRRALTIMGR--RAEEA 156
Query: 196 NVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNY------------- 242
V + L YP++ SDI D G DQ++ L R++AE++
Sbjct: 157 EVDASKLIYPLMQVSDIFYMDLDIALGGMDQRKAHMLARDVAEKLGRKKPVAIHTPIISS 216
Query: 243 LYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKD 302
L G + + G + KMSKS P ++ + ++D D
Sbjct: 217 LQGPGRMEASQGEIDDVLAEV-------------------KMSKSKP--ETAVFVVDSDD 255
Query: 303 VIANKIKRCKTDSSAGLEFDNLERPECNNLLSIYQLISGKTKGEVAEECQNMNWGS 358
I KI++ + ++ + N +L I + I G + +G
Sbjct: 256 DIRRKIRKA---------YCPAKQVQGNPVLEIARYILFARDGFTLRVDRPAKYGG 302
>2zp1_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, ligase,
aminoacyl-tRNA synthetase, ATP-binding, cytoplasm,
nucleotide-binding; HET: IYR; 1.70A {Methanocaldococcus
jannaschii} PDB: 1zh6_A* 1j1u_A* 1u7d_A 2q1g_A* 2pxh_A*
1zh0_A* 2q1i_A* 2ag6_A* 3qe4_A* 3d6u_A* 3d6v_A* 1u7x_A
3n2y_A* 2hgz_A*
Length = 314
Score = 66.5 bits (163), Expect = 1e-12
Identities = 56/272 (20%), Positives = 97/272 (35%), Gaps = 61/272 (22%)
Query: 78 KKRIVSGVQPTGSIHLGNYLGAIKNWIALQNS-YETLFFIVDLHA-ITLPYDTQQLSKAT 135
+K G +P+G IHLG+YL K I LQN+ ++ + + DL A + + ++ K
Sbjct: 28 EKSAYIGFEPSGKIHLGHYLQIKK-MIDLQNAGFDIIILLADLAAYLNQKGELDEIRKIG 86
Query: 136 RETAAIYLACGIDNSKASVFVQSHVRAHVELMWL----LSSATPIGWLNKMIQFKEKSHK 191
++ A G+ +V + L L+ T + + ++ +
Sbjct: 87 DYNKKVFEAMGLKAK----YVYGSEFQLDKDYTLNVYRLALKTTLKRARRSMELIARE-- 140
Query: 192 AGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKK 251
EN VA + YP++ + D G +Q++ L REL
Sbjct: 141 --DENPKVAEVIYPIMQVNTSHYLGVDVAVGGMEQRKIHMLARELLP------------- 185
Query: 252 LGGRGGAIFKVP----EPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANK 307
K P++ G DG KMS S + I + D + I K
Sbjct: 186 ---------KKVVCIHNPVLT--G------LDGEGKMSSSKGNF---IAVDDSPEEIRAK 225
Query: 308 IKRCKTDSSAGLEFDNLERPECNNLLSIYQLI 339
IK+ + E N ++ I +
Sbjct: 226 IKKA---------YCPAGVVEGNPIMEIAKYF 248
>1n3l_A Tyrosyl-tRNA synthetase; rossmann fold AS catalytic domain, unique
anticodon recognit domain, dimer, ligase; 1.18A {Homo
sapiens} SCOP: c.26.1.1 PDB: 1q11_A*
Length = 372
Score = 66.0 bits (161), Expect = 3e-12
Identities = 60/291 (20%), Positives = 98/291 (33%), Gaps = 51/291 (17%)
Query: 80 RIVSGVQPTGSIHLGNYLGAIKNWIA-LQNS-YETLFFIVDLHAI----TLPYDTQQLSK 133
+I G TG H+ ++ K IA + E DLHA P++ +L
Sbjct: 37 KIYWGTATTGKPHVAYFVPMSK--IADFLKAGCEVTILFADLHAYLDNMKAPWELLELRV 94
Query: 134 ATRETA--AIYLACGIDNSKASVFVQSHV---RAHVELMWLLSSATPIGWLNKMIQFKEK 188
+ E A+ + G+ K + + + ++ LSS K K
Sbjct: 95 SYYENVIKAMLESIGVPLEKLKFIKGTDYQLSKEYTLDVYRLSSVVTQHDSKKAGAEVVK 154
Query: 189 SHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRK 248
E+ ++ L YP L A D + D G DQ++ + + Y
Sbjct: 155 Q----VEHPLLSGLLYPGLQALDEEYLKVDAQFGGIDQRKIFTFAEKYLPALGY------ 204
Query: 249 WKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKI 308
L+ P ++ G SKMS S S+I+LLD K+ + K+
Sbjct: 205 ------------SKRVHLMNP----MVPGLTG-SKMSSSEEE--SKIDLLDRKEDVKKKL 245
Query: 309 KRCKTDSSAGLEFDNLERPECNNLLSIYQLISGKTKGEVAEECQNMNWGSL 359
K+ F E N +LS + + K E G+
Sbjct: 246 KKA---------FCEPGNVENNGVLSFIKHVLFPLKSEFVILRDEKWGGNK 287
>2cyb_A Tyrosyl-tRNA synthetase; rossmann-fold, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; HET: TYR; 1.80A {Archaeoglobus
fulgidus}
Length = 323
Score = 65.4 bits (160), Expect = 4e-12
Identities = 57/269 (21%), Positives = 107/269 (39%), Gaps = 53/269 (19%)
Query: 80 RIVSGVQPTGSIHLGNYLGAIKNWIALQNS-YETLFFIVDLHA-ITLPYDTQQLSKATRE 137
R G +P+G IHLG+ + K + LQ + +E + + D+HA + +++++
Sbjct: 34 RAYVGYEPSGEIHLGHMMTVQK-LMDLQEAGFEIIVLLADIHAYLNEKGTFEEIAEVADY 92
Query: 138 TAAIYLACGIDNSKASVFVQSHV---RAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGG 194
+++A G+D S+A + S R +V + ++ T + + + +
Sbjct: 93 NKKVFIALGLDESRAKFVLGSEYQLSRDYVLDVLKMARITTLNRARRSMDEVSRR----K 148
Query: 195 ENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGG 254
E+ V+ + YP++ A DI D G DQ++ L RE R+ Y
Sbjct: 149 EDPMVSQMIYPLMQALDIAHLGVDLAVGGIDQRKIHMLARENLPRLGY------------ 196
Query: 255 RGGAIFKVP----EPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKR 310
P P++ DG KMS S + I++ DP + + KI++
Sbjct: 197 ------SSPVCLHTPILVG--------LDG-QKMSSS---KGNYISVRDPPEEVERKIRK 238
Query: 311 CKTDSSAGLEFDNLERPECNNLLSIYQLI 339
+ E N +L I +
Sbjct: 239 A---------YCPAGVVEENPILDIAKYH 258
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 48.9 bits (116), Expect = 2e-06
Identities = 61/388 (15%), Positives = 107/388 (27%), Gaps = 160/388 (41%)
Query: 3 RALLSHF---LIVSNSSPRLVSSLKCRSRGGLPSKYCKTPGLIRQNRNLATHNGCGFRCY 59
L+ F + N L + L + L LI+ Y
Sbjct: 85 NLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTK----ELIK--------------NY 126
Query: 60 --CNVSLSEPTAPVASSSSVKKRIVSGVQPTGSIHLGNYL-----GAIKNWIA-LQNSYE 111
+ P ++S+ + V G+ L G ++ L++ Y+
Sbjct: 127 ITARIMAKRPFDKKSNSA-----LFRAVG-EGNAQL--VAIFGGQGNTDDYFEELRDLYQ 178
Query: 112 T----LFFIVDLHAITLPYDTQQLSKATRETAAIYLACGID--------NSK------AS 153
T + ++ A TL +L + T + ++ G++ ++ S
Sbjct: 179 TYHVLVGDLIKFSAETL----SELIRTTLDAEKVFTQ-GLNILEWLENPSNTPDKDYLLS 233
Query: 154 VFV--------Q-SH--VRAHV------ELMWLLSSATPIG--------------WLNKM 182
+ + Q +H V A + EL L AT W +
Sbjct: 234 IPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWES-- 291
Query: 183 IQFKEKSHKAGGENVGVALL---------TYPVLMASDILLYQSDFVPVGEDQ------- 226
F KA + +L YP +L D + E
Sbjct: 292 --FFVSVRKA------ITVLFFIGVRCYEAYPNTSLPPSIL--EDSLENNEGVPSPMLSI 341
Query: 227 ----KQHLELTRELAERVN-----------YLYGGRKWKKLGGRGGAIFKVPEPLIPPAG 271
++ ++ + + N L G K + G PP
Sbjct: 342 SNLTQEQVQ---DYVNKTNSHLPAGKQVEISLVNGAKNLVVSG-------------PPQ- 384
Query: 272 ARVMSLTDGLS----KMSKSAPSDQSRI 295
SL GL+ K + DQSRI
Sbjct: 385 ----SLY-GLNLTLRKAKAPSGLDQSRI 407
Score = 37.0 bits (85), Expect = 0.011
Identities = 25/139 (17%), Positives = 44/139 (31%), Gaps = 49/139 (35%)
Query: 258 AIFKV--PEPLIPP----AG------------ARVMSLTDGLS-------KMSKSAPSDQ 292
A F+ + LIP AG A VMS+ + M + P D+
Sbjct: 1742 AAFEDLKSKGLIPADATFAGHSLGEYAALASLADVMSIESLVEVVFYRGMTMQVAVPRDE 1801
Query: 293 S-----RINLLDPKDVIANKIKRCKTDSSAGLEF--DNLERPECNNLLSI--Y-----QL 338
+ ++P V A + S L++ + + + L+ I Y Q
Sbjct: 1802 LGRSNYGMIAINPGRVAA-------SFSQEALQYVVERVGK-RTGWLVEIVNYNVENQQY 1853
Query: 339 -ISGKTKG-EVAEECQNMN 355
+G + + N
Sbjct: 1854 VAAGDLRALDTVTNVLNFI 1872
Score = 33.5 bits (76), Expect = 0.14
Identities = 45/330 (13%), Positives = 83/330 (25%), Gaps = 165/330 (50%)
Query: 6 LSHFLIVSNSSPRLVSSLKCRSRGGLPSKYCKTPGLIRQN-RNLATHNG----------- 53
L+H+++ + G TPG +R + H+
Sbjct: 246 LAHYVVT------------AKLLG-------FTPGELRSYLKGATGHSQGLVTAVAIAET 286
Query: 54 -------------------CGFRC---YCNVSLSEPTAPVASSSSVKKRI--------VS 83
G RC Y N SL P S++ +S
Sbjct: 287 DSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLP----PSILEDSLENNEGVPSPMLSIS 342
Query: 84 GV---QPTGSIHLGN-YLGAIKN-WIALQNSYETLFFIV-----DLHA------------ 121
+ Q ++ N +L A K I+L N + +V L+
Sbjct: 343 NLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKN--LVVSGPPQSLYGLNLTLRKAKAPS 400
Query: 122 ----------------------ITLPYDTQQLSKAT--------RETAAI---YLAC--- 145
+ P+ + L A+ + + +
Sbjct: 401 GLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVY 460
Query: 146 ----GID--NSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAG------ 193
G D S+ + V + L P+ W E + +
Sbjct: 461 DTFDGSDLRVLSGSI-SERIVDCIIRL--------PVKW--------ETTTQFKATHILD 503
Query: 194 ---GENVGVALLTYP--------VLMASDI 212
G G+ +LT+ V++A +
Sbjct: 504 FGPGGASGLGVLTHRNKDGTGVRVIVAGTL 533
>1h3f_A Tyrosyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase; HET:
TYE; 2.00A {Thermus thermophilus} SCOP: c.26.1.1
d.66.1.4 PDB: 1h3e_A*
Length = 432
Score = 28.5 bits (64), Expect = 3.4
Identities = 23/87 (26%), Positives = 31/87 (35%), Gaps = 22/87 (25%)
Query: 202 LTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFK 261
L YP A D + ++D G DQ+ +L + RE+ YG
Sbjct: 173 LLYPFAQAYDSVAIRADVEMGGTDQRFNLLVGREVQRA----YGQSP----------QVC 218
Query: 262 VPEPLIPPAGARVMSLTDGLSKMSKSA 288
PL+ DG KMSKS
Sbjct: 219 FLMPLLVG--------LDGREKMSKSL 237
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.133 0.396
Gapped
Lambda K H
0.267 0.0648 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,217,255
Number of extensions: 299025
Number of successful extensions: 611
Number of sequences better than 10.0: 1
Number of HSP's gapped: 489
Number of HSP's successfully gapped: 34
Length of query: 359
Length of database: 6,701,793
Length adjustment: 95
Effective length of query: 264
Effective length of database: 4,049,298
Effective search space: 1069014672
Effective search space used: 1069014672
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.3 bits)