Query 018260
Match_columns 359
No_of_seqs 260 out of 2371
Neff 9.4
Searched_HMMs 46136
Date Fri Mar 29 07:29:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018260.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018260hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PHA02713 hypothetical protein; 100.0 5.6E-28 1.2E-32 238.1 16.5 158 184-358 10-170 (557)
2 PHA02790 Kelch-like protein; P 99.9 2.3E-27 4.9E-32 230.6 13.1 153 188-356 11-167 (480)
3 KOG4441 Proteins containing BT 99.9 1E-26 2.2E-31 228.5 15.5 161 183-358 20-181 (571)
4 PHA03098 kelch-like protein; P 99.9 1.3E-26 2.7E-31 229.4 15.6 146 195-358 5-152 (534)
5 KOG4350 Uncharacterized conser 99.9 2.5E-27 5.4E-32 211.2 9.0 163 184-358 29-192 (620)
6 cd03774 MATH_SPOP Speckle-type 99.9 6.5E-23 1.4E-27 166.5 14.1 131 28-168 2-138 (139)
7 cd03772 MATH_HAUSP Herpesvirus 99.9 1.1E-22 2.5E-27 164.5 13.4 126 30-168 2-134 (137)
8 cd03780 MATH_TRAF5 Tumor Necro 99.9 1.1E-22 2.4E-27 165.0 12.4 131 31-165 1-148 (148)
9 cd03777 MATH_TRAF3 Tumor Necro 99.9 2.4E-22 5.2E-27 168.7 13.0 135 28-166 36-185 (186)
10 cd03781 MATH_TRAF4 Tumor Necro 99.9 4.1E-22 8.8E-27 164.0 12.1 132 31-165 1-154 (154)
11 cd00270 MATH_TRAF_C Tumor Necr 99.9 3.3E-22 7.1E-27 164.4 10.9 132 31-165 1-149 (149)
12 cd03776 MATH_TRAF6 Tumor Necro 99.9 3.3E-22 7.1E-27 163.7 10.7 131 31-165 1-147 (147)
13 cd03771 MATH_Meprin Meprin fam 99.9 1E-21 2.2E-26 161.3 12.5 132 30-165 1-167 (167)
14 cd03779 MATH_TRAF1 Tumor Necro 99.9 8.5E-22 1.8E-26 158.9 11.4 130 31-165 1-147 (147)
15 cd03775 MATH_Ubp21p Ubiquitin- 99.9 1.5E-21 3.2E-26 157.3 12.6 118 32-165 2-134 (134)
16 cd03773 MATH_TRIM37 Tripartite 99.9 1.1E-21 2.5E-26 157.8 11.9 124 30-165 4-130 (132)
17 KOG4591 Uncharacterized conser 99.8 7.9E-21 1.7E-25 154.6 7.3 160 183-358 50-212 (280)
18 cd00121 MATH MATH (meprin and 99.8 5.4E-19 1.2E-23 140.5 13.8 120 31-165 1-126 (126)
19 KOG2075 Topoisomerase TOP1-int 99.8 3.9E-19 8.5E-24 162.7 13.9 165 177-356 92-263 (521)
20 PF00651 BTB: BTB/POZ domain; 99.8 9.6E-20 2.1E-24 142.0 8.2 106 190-310 1-110 (111)
21 cd03778 MATH_TRAF2 Tumor Necro 99.8 2.1E-18 4.5E-23 140.6 12.3 135 28-165 16-164 (164)
22 PF00917 MATH: MATH domain; I 99.7 1E-17 2.2E-22 132.2 11.0 113 37-166 1-119 (119)
23 KOG4682 Uncharacterized conser 99.7 8.3E-17 1.8E-21 144.3 10.5 152 190-357 60-216 (488)
24 cd03783 MATH_Meprin_Alpha Mepr 99.7 1.2E-16 2.6E-21 129.6 10.4 134 30-165 1-167 (167)
25 smart00225 BTB Broad-Complex, 99.7 9.4E-17 2E-21 119.5 8.6 89 201-304 1-90 (90)
26 KOG0783 Uncharacterized conser 99.6 2.4E-16 5.3E-21 152.1 7.8 147 197-353 708-857 (1267)
27 cd03782 MATH_Meprin_Beta Mepri 99.6 2.6E-15 5.6E-20 121.1 11.2 133 30-164 1-166 (167)
28 smart00061 MATH meprin and TRA 99.5 3E-14 6.5E-19 107.4 9.2 89 33-142 2-95 (95)
29 KOG1987 Speckle-type POZ prote 99.5 4.5E-13 9.8E-18 122.9 11.2 225 35-350 8-242 (297)
30 COG5077 Ubiquitin carboxyl-ter 99.2 1.7E-11 3.7E-16 118.2 7.1 126 27-169 35-173 (1089)
31 KOG0783 Uncharacterized conser 98.8 9.2E-09 2E-13 100.6 7.1 82 181-262 536-634 (1267)
32 KOG0511 Ankyrin repeat protein 98.6 1.9E-07 4.2E-12 84.0 8.2 130 209-354 301-441 (516)
33 KOG2716 Polymerase delta-inter 98.4 1.4E-06 3E-11 75.0 9.7 95 202-310 7-104 (230)
34 KOG2838 Uncharacterized conser 98.4 3E-07 6.5E-12 79.4 5.6 137 184-320 220-397 (401)
35 KOG2838 Uncharacterized conser 98.4 3.7E-07 8.1E-12 78.8 4.4 83 181-263 112-197 (401)
36 PF02214 BTB_2: BTB/POZ domain 98.0 7.9E-06 1.7E-10 61.2 5.1 87 202-303 1-94 (94)
37 KOG3473 RNA polymerase II tran 97.4 0.0012 2.7E-08 48.0 8.1 76 207-295 25-111 (112)
38 PF11822 DUF3342: Domain of un 97.4 0.00039 8.4E-09 62.6 6.6 110 209-333 14-136 (317)
39 PF07707 BACK: BTB And C-termi 97.1 0.00049 1.1E-08 52.2 3.8 43 316-358 1-43 (103)
40 KOG1665 AFH1-interacting prote 97.1 0.0016 3.6E-08 55.1 6.6 92 201-306 10-106 (302)
41 smart00512 Skp1 Found in Skp1 97.0 0.0043 9.3E-08 47.3 7.4 91 202-296 4-104 (104)
42 KOG2714 SETA binding protein S 96.7 0.0052 1.1E-07 57.1 7.3 91 201-306 12-110 (465)
43 smart00875 BACK BTB And C-term 96.6 0.0023 5E-08 48.0 3.6 42 317-358 2-43 (101)
44 KOG1863 Ubiquitin carboxyl-ter 96.6 0.0032 7E-08 67.4 5.9 121 31-168 27-153 (1093)
45 KOG0511 Ankyrin repeat protein 96.4 0.006 1.3E-07 55.7 5.5 102 188-305 135-240 (516)
46 PF03931 Skp1_POZ: Skp1 family 96.1 0.035 7.7E-07 37.8 7.0 56 202-259 3-59 (62)
47 KOG1724 SCF ubiquitin ligase, 95.9 0.067 1.5E-06 43.9 8.8 110 207-320 13-136 (162)
48 KOG1778 CREB binding protein/P 95.1 0.02 4.3E-07 52.3 3.3 141 201-355 28-170 (319)
49 KOG2715 Uncharacterized conser 94.9 0.1 2.2E-06 42.4 6.4 96 200-310 21-121 (210)
50 KOG0297 TNF receptor-associate 94.7 0.026 5.6E-07 53.6 3.1 79 27-106 276-365 (391)
51 COG5201 SKP1 SCF ubiquitin lig 93.4 0.85 1.8E-05 35.4 8.5 113 201-315 3-126 (158)
52 PF01466 Skp1: Skp1 family, di 91.7 0.31 6.7E-06 34.9 4.1 49 279-327 11-62 (78)
53 KOG2723 Uncharacterized conser 81.5 4.4 9.5E-05 35.1 5.9 94 199-306 7-105 (221)
54 PF11822 DUF3342: Domain of un 77.9 1 2.2E-05 41.0 1.1 42 310-351 71-112 (317)
55 PF07707 BACK: BTB And C-termi 77.5 5.3 0.00011 29.6 4.8 59 285-343 2-74 (103)
56 PF00651 BTB: BTB/POZ domain; 77.1 4.1 8.9E-05 30.6 4.1 31 312-342 80-110 (111)
57 KOG2075 Topoisomerase TOP1-int 67.1 4.2 9.1E-05 39.0 2.4 43 311-356 185-227 (521)
58 KOG3840 Uncharaterized conserv 66.1 9.9 0.00022 34.3 4.4 66 197-262 93-164 (438)
59 PHA03098 kelch-like protein; P 50.3 17 0.00037 36.1 3.7 33 310-342 72-104 (534)
60 PHA02713 hypothetical protein; 49.2 26 0.00056 35.2 4.7 34 310-343 90-123 (557)
61 PF06887 DUF1265: Protein of u 38.4 42 0.0009 21.2 2.6 34 315-348 12-46 (48)
62 smart00875 BACK BTB And C-term 37.8 33 0.00072 24.9 2.7 25 286-310 3-27 (101)
63 PHA02790 Kelch-like protein; P 36.8 55 0.0012 32.2 4.7 33 278-310 119-151 (480)
64 KOG4682 Uncharacterized conser 34.1 34 0.00074 32.4 2.6 33 278-310 169-201 (488)
65 PF09593 Pathogen_betaC1: Beta 31.8 1.2E+02 0.0026 23.5 4.8 55 207-262 20-77 (117)
66 PF01466 Skp1: Skp1 family, di 31.2 1E+02 0.0022 21.7 4.2 37 305-343 7-43 (78)
67 PF01690 PLRV_ORF5: Potato lea 25.4 6.5E+02 0.014 24.6 9.7 8 160-167 183-190 (465)
68 KOG4441 Proteins containing BT 24.1 1.3E+02 0.0028 30.4 5.0 32 310-341 101-132 (571)
69 PF02519 Auxin_inducible: Auxi 21.3 3.2E+02 0.0069 20.4 5.4 54 201-257 40-99 (100)
No 1
>PHA02713 hypothetical protein; Provisional
Probab=99.95 E-value=5.6e-28 Score=238.14 Aligned_cols=158 Identities=16% Similarity=0.206 Sum_probs=149.8
Q ss_pred CchHHHHHHhhcCCCCCCeEEEeC-CeEEeeehhhhhccCHHHHHhhccccccC--cceEEEcCCCHHHHHHHHHHHccC
Q 018260 184 SDIGDHFGMLLENEESSDITFNVV-GEKFHAHKLVLAARSPVFETEFLDAMEED--NHEIVVTDMEPKVFKALLHFIYKD 260 (359)
Q Consensus 184 ~~l~~~l~~~~~~~~~~Dv~i~v~-~~~~~~hk~iLa~~S~~F~~~~~~~~~e~--~~~i~l~~~~~~~~~~~L~~iY~~ 260 (359)
..+.+.|.+|+.++.++||+|.++ |++|+|||.|||++|+||++||.++|+|. +.+|.|.++++++|+.+|+|+||+
T Consensus 10 ~~~l~~l~~lr~~~~l~DV~L~v~~~~~f~~Hr~vLaa~S~YF~amF~~~~~e~~~~~~v~l~~v~~~~~~~ll~y~Yt~ 89 (557)
T PHA02713 10 RRVVSNISNLLDDDILCDVIITIGDGEEIKAHKTILAAGSKYFRTLFTTPMIIRDLVTRVNLQMFDKDAVKNIVQYLYNR 89 (557)
T ss_pred HHHHHHHHHHHhCCCCCCEEEEeCCCCEEeehHHHHhhcCHHHHHHhcCCchhhccCceEEeccCCHHHHHHHHHHhcCC
Confidence 567799999999999999999997 89999999999999999999999999975 789999999999999999999998
Q ss_pred CCCCcccCCCCCCCCCCCCcHHHHHHHHHHhhccChhHHHHHHHHHHhccCChhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 018260 261 TLIEDGECSASSSSCVPSVSDTLEAKLLAAAEKYVLPRLRLMCESVLCKVISVNSVAHTLALADRHCAMDLKSVCLKFAA 340 (359)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~A~~~~~~~L~~~ce~~L~~~l~~~n~~~~l~~A~~~~~~~L~~~~~~~i~ 340 (359)
.+ +.+++++||.+|++|+++.|++.|++||.+.++++||+.++..|..+.+..|.+.|.+||.
T Consensus 90 ~i-----------------~~~nv~~ll~aA~~lqi~~l~~~C~~~l~~~l~~~NCl~i~~~~~~~~~~~L~~~a~~~i~ 152 (557)
T PHA02713 90 HI-----------------SSMNVIDVLKCADYLLIDDLVTDCESYIKDYTNHDTCIYMYHRLYEMSHIPIVKYIKRMLM 152 (557)
T ss_pred CC-----------------CHHHHHHHHHHHHHHCHHHHHHHHHHHHHhhCCccchHHHHHHHHhccchHHHHHHHHHHH
Confidence 64 5789999999999999999999999999999999999999999999999999999999999
Q ss_pred HhHHHHhcCCcccCCccc
Q 018260 341 ENLVGGLGSIENLGIKAA 358 (359)
Q Consensus 341 ~~~~~~~~~~~f~~l~~~ 358 (359)
+||.++.++++|++|+.+
T Consensus 153 ~~f~~v~~~~ef~~L~~~ 170 (557)
T PHA02713 153 SNIPTLITTDAFKKTVFE 170 (557)
T ss_pred HHHHHHhCChhhhhCCHH
Confidence 999999999999998854
No 2
>PHA02790 Kelch-like protein; Provisional
Probab=99.95 E-value=2.3e-27 Score=230.56 Aligned_cols=153 Identities=11% Similarity=0.123 Sum_probs=140.7
Q ss_pred HHHHHhhcCCCCCCeEEEeCCeEEeeehhhhhccCHHHHHhhccccccCcceEEE--cCCCHHHHHHHHHHHccCCCCCc
Q 018260 188 DHFGMLLENEESSDITFNVVGEKFHAHKLVLAARSPVFETEFLDAMEEDNHEIVV--TDMEPKVFKALLHFIYKDTLIED 265 (359)
Q Consensus 188 ~~l~~~~~~~~~~Dv~i~v~~~~~~~hk~iLa~~S~~F~~~~~~~~~e~~~~i~l--~~~~~~~~~~~L~~iY~~~~~~~ 265 (359)
+++..+...+.++||++.+ |++|+|||.|||+.|+||++||.++|+|++.+|.+ .++++++++.+|+|+|||++
T Consensus 11 ~~~~~~~~~~~~~~~~~~~-~~~~~~HR~VLAa~S~YFraMF~~~~~Es~~~v~~~~~~v~~~~l~~lldy~YTg~l--- 86 (480)
T PHA02790 11 KNILALSMTKKFKTIIEAI-GGNIIVNSTILKKLSPYFRTHLRQKYTKNKDPVTRVCLDLDIHSLTSIVIYSYTGKV--- 86 (480)
T ss_pred hhHHHHHhhhhhceEEEEc-CcEEeeehhhhhhcCHHHHHHhcCCccccccceEEEecCcCHHHHHHHHHhheeeeE---
Confidence 5666777889999997655 55999999999999999999999999999334555 49999999999999999999
Q ss_pred ccCCCCCCCCCCCCcHHHHHHHHHHhhccChhHHHHHHHHHHhccCChhhHHHHHHHHHhcCChHHHHHHHHHHHHhHHH
Q 018260 266 GECSASSSSCVPSVSDTLEAKLLAAAEKYVLPRLRLMCESVLCKVISVNSVAHTLALADRHCAMDLKSVCLKFAAENLVG 345 (359)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~ll~~A~~~~~~~L~~~ce~~L~~~l~~~n~~~~l~~A~~~~~~~L~~~~~~~i~~~~~~ 345 (359)
.++.+|+++||.+|++|+++.+++.|++||.+.|+++||+.++.+|+.|++.+|++.+.+||.+||.+
T Consensus 87 ------------~it~~nV~~ll~aA~~Lqi~~v~~~C~~fL~~~l~~~NCl~i~~~A~~y~~~~L~~~a~~fi~~nF~~ 154 (480)
T PHA02790 87 ------------YIDSHNVVNLLRASILTSVEFIIYTCINFILRDFRKEYCVECYMMGIEYGLSNLLCHTKDFIAKHFLE 154 (480)
T ss_pred ------------EEecccHHHHHHHHHHhChHHHHHHHHHHHHhhCCcchHHHHHHHHHHhCHHHHHHHHHHHHHHhHHH
Confidence 58899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcC--CcccCCc
Q 018260 346 GLGS--IENLGIK 356 (359)
Q Consensus 346 ~~~~--~~f~~l~ 356 (359)
+.++ ++|.+||
T Consensus 155 v~~~~~~ef~~L~ 167 (480)
T PHA02790 155 LEDDIIDNFDYLS 167 (480)
T ss_pred HhcccchhhhhCC
Confidence 9987 8998876
No 3
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=99.94 E-value=1e-26 Score=228.50 Aligned_cols=161 Identities=24% Similarity=0.325 Sum_probs=155.6
Q ss_pred CCchHHHHHHhhcCCCCCCeEEEeCCeEEeeehhhhhccCHHHHHhhccccccC-cceEEEcCCCHHHHHHHHHHHccCC
Q 018260 183 ESDIGDHFGMLLENEESSDITFNVVGEKFHAHKLVLAARSPVFETEFLDAMEED-NHEIVVTDMEPKVFKALLHFIYKDT 261 (359)
Q Consensus 183 ~~~l~~~l~~~~~~~~~~Dv~i~v~~~~~~~hk~iLa~~S~~F~~~~~~~~~e~-~~~i~l~~~~~~~~~~~L~~iY~~~ 261 (359)
...+.+.+..+++.+.++||++.+++++|+|||.|||+.|+||++||.++++|. +.+|.|.++++..++.+|+|+||+.
T Consensus 20 ~~~~l~~l~~lr~~~~lcDv~L~v~~~~~~aHR~VLAa~S~YFraMFt~~l~e~~~~~i~l~~v~~~~l~~ll~y~Yt~~ 99 (571)
T KOG4441|consen 20 SKFLLQGLNELREEGLLCDVTLLVGDREFPAHRVVLAACSPYFRAMFTSGLKESKQKEINLEGVDPETLELLLDYAYTGK 99 (571)
T ss_pred HHHHHHHHHHHHHhCCCceEEEEECCeeechHHHHHHhccHHHHHHhcCCcccccceEEEEecCCHHHHHHHHHHhhcce
Confidence 356678899999999999999999999999999999999999999999999999 9999999999999999999999999
Q ss_pred CCCcccCCCCCCCCCCCCcHHHHHHHHHHhhccChhHHHHHHHHHHhccCChhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 018260 262 LIEDGECSASSSSCVPSVSDTLEAKLLAAAEKYVLPRLRLMCESVLCKVISVNSVAHTLALADRHCAMDLKSVCLKFAAE 341 (359)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~ll~~A~~~~~~~L~~~ce~~L~~~l~~~n~~~~l~~A~~~~~~~L~~~~~~~i~~ 341 (359)
+ .++.+++++||.+|++|+++.+++.|.+||.+.++++|++.+..+|+.|++..|.+.+..|+..
T Consensus 100 i---------------~i~~~nVq~ll~aA~~lQi~~v~~~C~~fL~~~l~~~Nclgi~~~a~~~~~~~L~~~a~~~i~~ 164 (571)
T KOG4441|consen 100 L---------------EISEDNVQELLEAASLLQIPEVVDACCEFLESQLDPSNCLGIRRFAELHSCTELLEVADEYILQ 164 (571)
T ss_pred E---------------EechHhHHHHHHHHHHhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 9 5899999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHhcCCcccCCccc
Q 018260 342 NLVGGLGSIENLGIKAA 358 (359)
Q Consensus 342 ~~~~~~~~~~f~~l~~~ 358 (359)
||.++.+++||++||.+
T Consensus 165 ~F~~v~~~eefl~L~~~ 181 (571)
T KOG4441|consen 165 HFAEVSKTEEFLLLSLE 181 (571)
T ss_pred HHHHHhccHHhhCCCHH
Confidence 99999999999999864
No 4
>PHA03098 kelch-like protein; Provisional
Probab=99.94 E-value=1.3e-26 Score=229.41 Aligned_cols=146 Identities=16% Similarity=0.261 Sum_probs=139.6
Q ss_pred cCCCCCCeEEEe--CCeEEeeehhhhhccCHHHHHhhccccccCcceEEEcCCCHHHHHHHHHHHccCCCCCcccCCCCC
Q 018260 195 ENEESSDITFNV--VGEKFHAHKLVLAARSPVFETEFLDAMEEDNHEIVVTDMEPKVFKALLHFIYKDTLIEDGECSASS 272 (359)
Q Consensus 195 ~~~~~~Dv~i~v--~~~~~~~hk~iLa~~S~~F~~~~~~~~~e~~~~i~l~~~~~~~~~~~L~~iY~~~~~~~~~~~~~~ 272 (359)
.++.++||+|.+ +|++|+|||.||+++|+||++||.++|+ +.+|.|.+ ++++|+.+|+|||||++
T Consensus 5 ~~~~~~Dv~l~~~~~~~~~~~Hk~vLaa~S~yF~~mf~~~~~--~~~i~l~~-~~~~~~~~l~y~Ytg~~---------- 71 (534)
T PHA03098 5 ELQKFCDESIIIVNGGGIIKVHKIILSSSSEYFKKMFKNNFK--ENEINLNI-DYDSFNEVIKYIYTGKI---------- 71 (534)
T ss_pred ccCCCCCEEEEEEcCCEEEEeHHHHHHhhhHHHHHHHhCCCC--CceEEecC-CHHHHHHHHHHhcCCce----------
Confidence 378899999998 9999999999999999999999999887 57899999 99999999999999998
Q ss_pred CCCCCCCcHHHHHHHHHHhhccChhHHHHHHHHHHhccCChhhHHHHHHHHHhcCChHHHHHHHHHHHHhHHHHhcCCcc
Q 018260 273 SSCVPSVSDTLEAKLLAAAEKYVLPRLRLMCESVLCKVISVNSVAHTLALADRHCAMDLKSVCLKFAAENLVGGLGSIEN 352 (359)
Q Consensus 273 ~~~~~~~~~~~~~~ll~~A~~~~~~~L~~~ce~~L~~~l~~~n~~~~l~~A~~~~~~~L~~~~~~~i~~~~~~~~~~~~f 352 (359)
.++.+++.+||.+|++|+++.|+.+|+++|.+.++.+|++.++.+|..|++..|++.|.+||.+||.++.++++|
T Consensus 72 -----~i~~~~~~~ll~~A~~l~~~~l~~~C~~~l~~~l~~~nc~~~~~~a~~~~~~~L~~~~~~~i~~nf~~v~~~~~f 146 (534)
T PHA03098 72 -----NITSNNVKDILSIANYLIIDFLINLCINYIIKIIDDNNCIDIYRFSFFYGCKKLYSAAYNYIRNNIELIYNDPDF 146 (534)
T ss_pred -----EEcHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhCCHhHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHhcCchh
Confidence 578899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCccc
Q 018260 353 LGIKAA 358 (359)
Q Consensus 353 ~~l~~~ 358 (359)
.+|+.+
T Consensus 147 ~~l~~~ 152 (534)
T PHA03098 147 IYLSKN 152 (534)
T ss_pred hcCCHH
Confidence 999864
No 5
>KOG4350 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=99.94 E-value=2.5e-27 Score=211.23 Aligned_cols=163 Identities=25% Similarity=0.383 Sum_probs=154.3
Q ss_pred CchHHHHHHhhcCCCCCCeEEEeCCeEEeeehhhhhccCHHHHHhhccccccC-cceEEEcCCCHHHHHHHHHHHccCCC
Q 018260 184 SDIGDHFGMLLENEESSDITFNVVGEKFHAHKLVLAARSPVFETEFLDAMEED-NHEIVVTDMEPKVFKALLHFIYKDTL 262 (359)
Q Consensus 184 ~~l~~~l~~~~~~~~~~Dv~i~v~~~~~~~hk~iLa~~S~~F~~~~~~~~~e~-~~~i~l~~~~~~~~~~~L~~iY~~~~ 262 (359)
..++++++.++.+++++||+|+|++++|+|||.|||+||.||++|+.++|+|+ +..|+|.+...++|+++|+|||||++
T Consensus 29 ~~fS~~~~~l~~~e~y~DVtfvve~~rfpAHRvILAaRs~yFRAlLYgGm~Es~q~~ipLq~t~~eAF~~lLrYiYtg~~ 108 (620)
T KOG4350|consen 29 NNFSQSFDELFTSEDYSDVTFVVEDTRFPAHRVILAARSSYFRALLYGGMQESHQQLIPLQETNSEAFRALLRYIYTGKI 108 (620)
T ss_pred cchhHHHHHHhhcCcccceEEEEeccccchhhhhHHHHHHHHHHHHhhhhhhhhhcccccccccHHHHHHHHHHHhhcce
Confidence 34579999999999999999999999999999999999999999999999999 99999999999999999999999998
Q ss_pred CCcccCCCCCCCCCCCCcHHHHHHHHHHhhccChhHHHHHHHHHHhccCChhhHHHHHHHHHhcCChHHHHHHHHHHHHh
Q 018260 263 IEDGECSASSSSCVPSVSDTLEAKLLAAAEKYVLPRLRLMCESVLCKVISVNSVAHTLALADRHCAMDLKSVCLKFAAEN 342 (359)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~A~~~~~~~L~~~ce~~L~~~l~~~n~~~~l~~A~~~~~~~L~~~~~~~i~~~ 342 (359)
.... ...+.+.+.|.+|++|++..|.....++|++.+..+|++.++..|..|++.+|-..|+.|+.+|
T Consensus 109 ~l~~------------~~ed~lld~LslAh~Ygf~~Le~aiSeYl~~iL~~~NvCmifdaA~ly~l~~Lt~~C~mfmDrn 176 (620)
T KOG4350|consen 109 DLAG------------VEEDILLDYLSLAHRYGFIQLETAISEYLKEILKNENVCMIFDAAYLYQLTDLTDYCMMFMDRN 176 (620)
T ss_pred eccc------------chHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHcccceeeeeeHHHHhcchHHHHHHHHHHhcC
Confidence 6443 5677889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCcccCCccc
Q 018260 343 LVGGLGSIENLGIKAA 358 (359)
Q Consensus 343 ~~~~~~~~~f~~l~~~ 358 (359)
..+++..+.|..|+.+
T Consensus 177 A~~lL~~~sFn~LSk~ 192 (620)
T KOG4350|consen 177 ADQLLEDPSFNRLSKD 192 (620)
T ss_pred HHhhhcCcchhhhhHH
Confidence 9999999999998864
No 6
>cd03774 MATH_SPOP Speckle-type POZ protein (SPOP) family, MATH domain; composed of proteins with similarity to human SPOP. SPOP was isolated as a novel antigen recognized by serum from a scleroderma patient, whose overexpression in COS cells results in a discrete speckled pattern in the nuclei. It contains an N-terminal MATH domain and a C-terminal BTB (also called POZ) domain. Together with Cul3, SPOP constitutes an ubiquitin E3 ligase which is able to ubiquitinate the PcG protein BMI1, the variant histone macroH2A1 and the death domain-associated protein Daxx. Therefore, SPOP may be involved in the regulation of these proteins and may play a role in transcriptional regulation, apoptosis and X-chromosome inactivation. Cul3 binds to the BTB domain of SPOP whereas Daxx and the macroH2A1 nonhistone region have been shown to bind to the MATH domain. Both MATH and BTB domains are necessary for the nuclear speckled accumulation of SPOP. There are many proteins, mostly uncharacterized, conta
Probab=99.90 E-value=6.5e-23 Score=166.45 Aligned_cols=131 Identities=30% Similarity=0.635 Sum_probs=105.9
Q ss_pred eeeeEEEEEEccccccccCCCCCeeeeceeeecC---eEEEEEEEcCCCCCCCCCCcEEEEEEecc-CCccceeeEEEEE
Q 018260 28 TINGSHHFTIKGYSLSKGIGIGKHIASDNFSVGG---YQWAIYFYPDGKNPEDNSTYVSVFIALAS-EGTDVRALFELTL 103 (359)
Q Consensus 28 ~~~~~~~w~I~~fs~~~~~~~~~~~~S~~f~~gg---~~W~l~~~p~g~~~~~~~~~lsl~L~~~~-~~w~~~~~~~~~l 103 (359)
+...+|+|+|+|||.+++ ..|+++.|++|.+|| ++|+|++||+|...+ +.+|+||||++.+ ..+.+.|+|+++|
T Consensus 2 ~~~~~~~w~I~~fS~~~~-~~~~~i~S~~F~vgg~~~~~W~l~~yP~G~~~~-~~~~iSlyL~l~~~~~~~v~a~f~~~l 79 (139)
T cd03774 2 VVKFCYMWTISNFSFCRE-EMGEVIKSSTFSSGANDKLKWCLRVNPKGLDEE-SKDYLSLYLLLVSCPKSEVRAKFKFSI 79 (139)
T ss_pred ceEEEEEEEECCchhhhh-cCCCEEECCCeecCCcCCceEEEEEeCCCCCCC-CCCeEEEEEEEccCCCCcEEEEEEEEE
Confidence 567899999999998875 468899999999998 599999999998643 5789999999865 4578999999999
Q ss_pred EecCCCCcceeeeccccccccCCeeecccCccccccceeeccccc--cCCCccCCeEEEEEeeeeee
Q 018260 104 VDQSGKGKHKVHSHFDRSLESGPYTLKYRGSMWGYKRFFRRAMLE--TSDFLKDDCLKINCTVGVVV 168 (359)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~G~~~fi~~~~L~--~~~~l~~d~l~i~~~v~i~~ 168 (359)
+|+.++...... ....+.|. ....|||..|+++++|. .++||.||+++|+|+|.|+.
T Consensus 80 ~n~~~~~~~~~~-------~~~~~~f~-~~~~wG~~~fi~~~~L~~~~~g~l~dD~l~I~c~I~V~~ 138 (139)
T cd03774 80 LNAKGEETKAME-------SQRAYRFV-QGKDWGFKKFIRRDFLLDEANGLLPDDKLTLFCEVSVVQ 138 (139)
T ss_pred EecCCCeeeeec-------ccCcEeCC-CCCccCHHHeeeHHHhhhhhcccccCCEEEEEEEEEEEc
Confidence 999876432110 11124443 35789999999999994 47899999999999999863
No 7
>cd03772 MATH_HAUSP Herpesvirus-associated ubiquitin-specific protease (HAUSP, also known as USP7) family, N-terminal MATH (TRAF-like) domain; composed of proteins similar to human HAUSP, an enzyme that specifically catalyzes the deubiquitylation of p53 and MDM2, hence playing an important role in the p53-MDM2 pathway. It contains an N-terminal TRAF-like domain and a C-terminal catalytic protease (C19 family) domain. The tumor suppressor p53 protein is a transcription factor that responds to many cellular stress signals and is regulated primarily through ubiquitylation and subsequent degradation. MDM2 is a RING-finger E3 ubiquitin ligase that promotes p53 ubiquitinylation. p53 and MDM2 bind to the same site in the N-terminal TRAF-like domain of HAUSP in a mutually exclusive manner. HAUSP also interacts with the Epstein-Barr nuclear antigen 1 (EBNA1) protein of the Epstein-Barr virus (EBV), which efficiently immortalizes infected cells predisposing the host to a variety of cancers. EBNA1
Probab=99.89 E-value=1.1e-22 Score=164.55 Aligned_cols=126 Identities=16% Similarity=0.283 Sum_probs=101.0
Q ss_pred eeEEEEEEccccccccCCCCCeeeeceeeecCeEEEEEEEcCCCCCC-CCCCcEEEEEEecc----CCccceeeEEEEEE
Q 018260 30 NGSHHFTIKGYSLSKGIGIGKHIASDNFSVGGYQWAIYFYPDGKNPE-DNSTYVSVFIALAS----EGTDVRALFELTLV 104 (359)
Q Consensus 30 ~~~~~w~I~~fs~~~~~~~~~~~~S~~f~~gg~~W~l~~~p~g~~~~-~~~~~lsl~L~~~~----~~w~~~~~~~~~l~ 104 (359)
.++|+|+|+||+.+ ++.+.|+.|.+||++|+|.+||+|.... +..+|+||||.|.+ ..|.+.|+|+++|+
T Consensus 2 ~~~~~~~I~~~S~l-----~e~~~S~~f~vgG~~W~i~~~P~g~~~~~~~~~~lsvyL~~~~~~~~~~w~i~a~~~~~l~ 76 (137)
T cd03772 2 EATFSFTVERFSRL-----SESVLSPPCFVRNLPWKIMVMPRNYPDRNPHQKSVGFFLQCNAESDSTSWSCHAQAVLRII 76 (137)
T ss_pred CcEEEEEECCcccC-----CCcEECCCEEECCcceEEEEEeCCCCCCCCCCCeEEEEEeeCCcCCCCCCeEEEEEEEEEE
Confidence 47899999999987 4689999999999999999999996532 24589999999965 35899999999999
Q ss_pred ecCCCCcceeeeccccccccCCeeecccCccccccceeeccccc--cCCCccCCeEEEEEeeeeee
Q 018260 105 DQSGKGKHKVHSHFDRSLESGPYTLKYRGSMWGYKRFFRRAMLE--TSDFLKDDCLKINCTVGVVV 168 (359)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~G~~~fi~~~~L~--~~~~l~~d~l~i~~~v~i~~ 168 (359)
|+.+...... +. ..+.|......|||.+|++|++|. .++||.||+++|+|+|.+..
T Consensus 77 ~~~~~~~~~~-----~~---~~~~f~~~~~~~G~~~fi~~~~L~~~~sgyl~~D~l~Ie~~V~~~~ 134 (137)
T cd03772 77 NYKDDEPSFS-----RR---ISHLFFSKENDWGFSNFMTWSEVTDPEKGFIEDDTITLEVYVQADA 134 (137)
T ss_pred cCCCCcccEE-----Ee---eeeEEcCCCCCccchheeEHHHhcCCCCCcEECCEEEEEEEEEeeC
Confidence 9985322111 00 113455556789999999999994 58999999999999998753
No 8
>cd03780 MATH_TRAF5 Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF5 subfamily, TRAF domain, C-terminal MATH subdomain; TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses. TRAF5 was identified as an activator of nuclear factor-kappaB and a regulator of lymphotoxin-beta receptor and CD40 signaling. Its interaction with CD40 is indirect, involving hetero-oligomerization with TRAF3. In addition, TRAF5 has been shown to associate with other TNFRs including CD27, CD30, OX40 and GITR (glucocorticoid-induced TNFR). It plays a role in modulating Th2 immune responses (driven by OX40 costimulation) and T-cell activation (triggered by GITR). It is also involved in osteoclastogenesis. TRAF5 contains a RING finger domain, five zinc finger domains, and a TRAF domain. The TRAF domain can be divided into a more dive
Probab=99.89 E-value=1.1e-22 Score=164.95 Aligned_cols=131 Identities=26% Similarity=0.394 Sum_probs=102.9
Q ss_pred eEEEEEEcccccccc-CCCCC--eeeecee--eecCeEEEEEEEcCCCCCCCCCCcEEEEEEeccC------CccceeeE
Q 018260 31 GSHHFTIKGYSLSKG-IGIGK--HIASDNF--SVGGYQWAIYFYPDGKNPEDNSTYVSVFIALASE------GTDVRALF 99 (359)
Q Consensus 31 ~~~~w~I~~fs~~~~-~~~~~--~~~S~~f--~~gg~~W~l~~~p~g~~~~~~~~~lsl~L~~~~~------~w~~~~~~ 99 (359)
|.++|+|++|+++++ +..|+ ++.|++| .++||+|+|++||||...+ ..+|||+||++..+ .|++.+++
T Consensus 1 g~~vwkI~~ys~~~~~~~~g~~~~i~S~~Fyt~~~Gy~w~i~~ypnG~~~~-~~~~iSv~l~l~~g~~D~~l~wp~~~~~ 79 (148)
T cd03780 1 GKLIWKVTDYKMKKKEAVDGHTVSIFSQPFYTSRCGYRLCARAYLNGDGSG-KGTHLSLYFVVMRGEFDSLLQWPFRQRV 79 (148)
T ss_pred CEEEEEECCHHHHHHhhcCCCccEEECCCcccCCCCeeEEEEEEcCCCCCC-CCCEEEEEEEEecCccccccCcceEEEE
Confidence 579999999999864 56777 8999999 8999999999999998743 67899999999875 69999999
Q ss_pred EEEEEecCCCCcceeeeccccccccCCeeeccc----CccccccceeeccccccC--CCccCCeEEEEEeee
Q 018260 100 ELTLVDQSGKGKHKVHSHFDRSLESGPYTLKYR----GSMWGYKRFFRRAMLETS--DFLKDDCLKINCTVG 165 (359)
Q Consensus 100 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~----~~~~G~~~fi~~~~L~~~--~~l~~d~l~i~~~v~ 165 (359)
+|+|+||.+++.+...+.... .....|... +..||+.+||++++|+.+ +|+.||++.|+|.|.
T Consensus 80 tfsLlDq~~~~~~~~~~~~~~---~~~~~F~rp~~~~n~~~G~~~Fi~~~~Le~s~~~ylkdD~~~Ik~~v~ 148 (148)
T cd03780 80 TLMLLDQSGKKNHIMETFKAD---PNSSSFKRPDGEMNIASGCPRFVAHSVLENAKNTYIKDDTLFLKVAVD 148 (148)
T ss_pred EEEEECCCCCCCCcceeeecC---CccccccCCCCCCCCCcChhheeEHHHhhcccCCcCcCCEEEEEEEEC
Confidence 999999987654311111000 001223211 447999999999999865 999999999999873
No 9
>cd03777 MATH_TRAF3 Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF3 subfamily, TRAF domain; TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses. TRAF3 was first described as a molecule that binds the cytoplasmic tail of CD40. However, it is not required for CD40 signaling. More recently, TRAF3 has been identified as a key regulator of type I interferon (IFN) production and the mammalian innate antiviral immunity. It mediates IFN responses in Toll-like receptor (TLR)-dependent as well as TLR-independent viral recognition pathways. It is also a key element in immunological homeostasis through its regulation of the anti-inflammatory cytokine interleukin-10. TRAF3 contains a RING finger domain, five zinc finger domains, and a TRAF domain. The TRAF domain can be divided into a more divergent N-terminal al
Probab=99.88 E-value=2.4e-22 Score=168.73 Aligned_cols=135 Identities=24% Similarity=0.381 Sum_probs=104.3
Q ss_pred eeeeEEEEEEcccccccc-CCCCC--eeeeceeeec--CeEEEEEEEcCCCCCCCCCCcEEEEEEeccC------Cccce
Q 018260 28 TINGSHHFTIKGYSLSKG-IGIGK--HIASDNFSVG--GYQWAIYFYPDGKNPEDNSTYVSVFIALASE------GTDVR 96 (359)
Q Consensus 28 ~~~~~~~w~I~~fs~~~~-~~~~~--~~~S~~f~~g--g~~W~l~~~p~g~~~~~~~~~lsl~L~~~~~------~w~~~ 96 (359)
...|+|+|+|.+|+.+++ +..|+ ++.|++|.+| ||+|+|++||||.+.+ ..+|+|+||++.++ .|++.
T Consensus 36 ~~~G~hvwkI~~yS~~~~~~~~g~~~~i~S~~Fyvg~~GY~w~i~~ypnG~g~~-~~~~iSvyl~L~~ge~D~~L~WP~~ 114 (186)
T cd03777 36 SYNGVLIWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKMCARVYLNGDGMG-KGTHLSLFFVIMRGEYDALLPWPFK 114 (186)
T ss_pred ccceEEEEEECChhHHHHhhccCCCcEEECCCeEeCCCCeeEEEEEEcCCCCCC-CCCEEEEEEEEecCCcccccCCcee
Confidence 346999999999998764 55666 8999999999 9999999999998743 67899999999764 69999
Q ss_pred eeEEEEEEecCCCCcceeeeccccccccCCeeec-cc---CccccccceeeccccccCCCccCCeEEEEEeeee
Q 018260 97 ALFELTLVDQSGKGKHKVHSHFDRSLESGPYTLK-YR---GSMWGYKRFFRRAMLETSDFLKDDCLKINCTVGV 166 (359)
Q Consensus 97 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~-~~---~~~~G~~~fi~~~~L~~~~~l~~d~l~i~~~v~i 166 (359)
++++|+|+|+.+...... ..+...-. ...|. .. +..||+..||++++|+.++|+.||++.|+|.|..
T Consensus 115 ~~~tfsLlDQ~~~~~~~~-~~~~p~p~--~~~F~rp~~~~n~~~G~~~Fi~~~~Le~~~ylkdD~l~Irv~v~~ 185 (186)
T cd03777 115 QKVTLMLMDQGSSRRHLG-DAFKPDPN--SSSFKKPTGEMNIASGCPVFVAQTVLENGTYIKDDTIFIKVIVDT 185 (186)
T ss_pred EEEEEEEEcCCCcccccc-ceeccCCc--cccccCCccCCCCCCCchheeEHHHhccCCcEeCCEEEEEEEEec
Confidence 999999999976322110 00000000 01232 11 4579999999999999899999999999998863
No 10
>cd03781 MATH_TRAF4 Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF4 subfamily, TRAF domain, C-terminal MATH subdomain; composed of proteins with similarity to human TRAF4, including the Drosophila protein DTRAF1. TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses. TRAF4 is highly expressed during embryogenesis, especially in the central and peripheral nervous system. Studies using TRAF4-deficient mice show that TRAF4 is required for neurogenesis, as well as the development of the trachea and the axial skeleton. In addition, TRAF4 augments nuclear factor-kappaB activation triggered by GITR (glucocorticoid-induced TNFR), a receptor expressed in T-cells, B-cells and macrophages. It also participates in counteracting the signaling mediated by Toll-like receptors through its association with TRAF6 and TR
Probab=99.88 E-value=4.1e-22 Score=164.04 Aligned_cols=132 Identities=21% Similarity=0.344 Sum_probs=102.0
Q ss_pred eEEEEEEccccccccC--C-CCCeeeeceeeec--CeEEEEEEEcCCCCCCCCCCcEEEEEEeccC------CccceeeE
Q 018260 31 GSHHFTIKGYSLSKGI--G-IGKHIASDNFSVG--GYQWAIYFYPDGKNPEDNSTYVSVFIALASE------GTDVRALF 99 (359)
Q Consensus 31 ~~~~w~I~~fs~~~~~--~-~~~~~~S~~f~~g--g~~W~l~~~p~g~~~~~~~~~lsl~L~~~~~------~w~~~~~~ 99 (359)
|.|+|+|++|+.++++ . .++.+.|++|.+| ||+|+|++||||.... ..+|||+||++.++ .|++.+++
T Consensus 1 g~~~~~I~gys~~~~~~~~~~~~~i~S~~F~vg~~Gy~w~i~~yPnG~~~~-~~~~vs~~l~l~~ge~d~~l~wp~~a~~ 79 (154)
T cd03781 1 GTLLWKITDYSRKLQEAKGRDNLELFSPPFYTHRYGYKLQVSAFLNGNGSG-EGSHLSVYIRVLPGEYDNLLEWPFSHRI 79 (154)
T ss_pred CEEEEEECCHHHHHHHhhcCCCceEECCCeecCCCCEEEEEEEECCCCCCC-CCCEEEEEEEEecCCcccccCCceeeEE
Confidence 6799999999988763 3 4689999999999 9999999999998743 57899999999763 79999999
Q ss_pred EEEEEecCCCC--cc-eeeeccccccccCCeeec--------ccCccccccceeeccccccCCCccCCeEEEEEeee
Q 018260 100 ELTLVDQSGKG--KH-KVHSHFDRSLESGPYTLK--------YRGSMWGYKRFFRRAMLETSDFLKDDCLKINCTVG 165 (359)
Q Consensus 100 ~~~l~~~~~~~--~~-~~~~~~~~~~~~~~~~f~--------~~~~~~G~~~fi~~~~L~~~~~l~~d~l~i~~~v~ 165 (359)
+|+|+|+.+.. .. .+...+... .....|. ..+.+||+..||++++|+.++||.||+++|+|+|+
T Consensus 80 ~~~llDq~~~~~~~~~~~~~~~~~~--~~~~~F~rp~~~~~~~~~~~~G~~~fi~~~~Le~~~yl~dD~l~Irc~v~ 154 (154)
T cd03781 80 TFTLLDQSDPSLSKPQHITETFTPD--PTWKNFQKPSASRLDESTLGFGYPKFISHEDLKKRNYIKDDAIFLRASVE 154 (154)
T ss_pred EEEEECCCCCccccCcceEEEEEcC--CchhhhcCCcccccCCCCCccchhHeeEHHHHhhCCcccCCEEEEEEEeC
Confidence 99999998651 11 111111000 0011222 23457999999999999988999999999999884
No 11
>cd00270 MATH_TRAF_C Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF domain, C-terminal MATH subdomain; TRAF molecules serve as adapter proteins that link cell surface TNFRs and receptors of the interleukin-1/Toll-like family to downstream kinase signaling cascades which results in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses in the immune and inflammatory systems. There are at least six mammalian and three Drosophila proteins containing TRAF domains. The mammalian TRAFs display varying expression profiles, indicating independent and cell type-specific regulation. They display distinct, as well as overlapping functions and interactions with receptors. Most TRAFs, except TRAF1, share N-terminal homology and contain a RING domain, multiple zinc finger domains, and a TRAF domain. TRAFs form homo- and heterotrimers through its TRAF domain. The TRAF domain can be divided into a more divergent N-ter
Probab=99.88 E-value=3.3e-22 Score=164.41 Aligned_cols=132 Identities=27% Similarity=0.399 Sum_probs=100.5
Q ss_pred eEEEEEEcccccccc---CCCCCeeeeceeeec--CeEEEEEEEcCCCCCCCCCCcEEEEEEeccC------CccceeeE
Q 018260 31 GSHHFTIKGYSLSKG---IGIGKHIASDNFSVG--GYQWAIYFYPDGKNPEDNSTYVSVFIALASE------GTDVRALF 99 (359)
Q Consensus 31 ~~~~w~I~~fs~~~~---~~~~~~~~S~~f~~g--g~~W~l~~~p~g~~~~~~~~~lsl~L~~~~~------~w~~~~~~ 99 (359)
|+|+|+|++|+.+++ .+.++.+.|+.|.+| |++|+|++||+|.... ..+||||||++.++ +|++.++|
T Consensus 1 g~~~w~I~~fs~~~~~~~~~~~~~~~S~~F~vg~~G~~w~i~~yP~G~~~~-~~~~lsl~L~l~~~~~d~~~~w~~~~~~ 79 (149)
T cd00270 1 GVLIWKIKDYSRKLQEAVAGSNTVLYSPPFYTSRYGYKLCLRLYLNGDGTG-KGTHLSLFVHVMKGEYDALLEWPFRGKI 79 (149)
T ss_pred CEEEEEECCHHHHHHHHhcCCCceEECCCcccCCCCceEEEEEEeCCCCCC-CCCEEEEEEEEeccCCCccccCCccceE
Confidence 589999999999875 246789999999999 9999999999998643 46799999998542 48999999
Q ss_pred EEEEEecCCCCccee-eeccccccccCCeeec-----ccCccccccceeeccccccCCCccCCeEEEEEeee
Q 018260 100 ELTLVDQSGKGKHKV-HSHFDRSLESGPYTLK-----YRGSMWGYKRFFRRAMLETSDFLKDDCLKINCTVG 165 (359)
Q Consensus 100 ~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~f~-----~~~~~~G~~~fi~~~~L~~~~~l~~d~l~i~~~v~ 165 (359)
+|+|+|+.++...+. ...+.... ....|. ....+|||.+|+++++|++++||.||+++|+|+|.
T Consensus 80 ~~~l~d~~~~~~~~~~~~~~~~~~--~~~~f~~~~~~~~~~~~G~~~fi~~~~L~~~gfl~dD~l~I~~~v~ 149 (149)
T cd00270 80 TLTLLDQSDDSKRKHITETFMPDP--NSSAFQRPPTGENNIGFGYPEFVPLEKLESRGYVKDDTLFIKVEVD 149 (149)
T ss_pred EEEEECCCCccccCceEEEEEcCC--chHhhcCCCcccCCCCcCcceEeEHHHhccCCCEeCCEEEEEEEEC
Confidence 999999987411110 00000000 011221 24568999999999999878999999999999984
No 12
>cd03776 MATH_TRAF6 Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF6 subfamily, TRAF domain, C-terminal MATH subdomain; composed of proteins with similarity to human TRAF6, including the Drosophila protein DTRAF2. TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses. TRAF6 is the most divergent in its TRAF domain among the mammalian TRAFs. In addition to mediating TNFR family signaling, it is also an essential signaling molecule of the interleukin-1/Toll-like receptor superfamily. Whereas other TRAF molecules display similar and overlapping TNFR-binding specificities, TRAF6 binds completely different sites on receptors such as CD40 and RANK. TRAF6 serves as a molecular bridge between innate and adaptive immunity and plays a central role in osteoimmunology. DTRAF2, as an activator of nuclear factor-kapp
Probab=99.88 E-value=3.3e-22 Score=163.72 Aligned_cols=131 Identities=23% Similarity=0.311 Sum_probs=100.0
Q ss_pred eEEEEEEcccccccc-CCCCCe--eeeceeee--cCeEEEEEEEcCCCCCCCCCCcEEEEEEeccC------CccceeeE
Q 018260 31 GSHHFTIKGYSLSKG-IGIGKH--IASDNFSV--GGYQWAIYFYPDGKNPEDNSTYVSVFIALASE------GTDVRALF 99 (359)
Q Consensus 31 ~~~~w~I~~fs~~~~-~~~~~~--~~S~~f~~--gg~~W~l~~~p~g~~~~~~~~~lsl~L~~~~~------~w~~~~~~ 99 (359)
|+|+|+|++|+.+++ ++.|+. +.|++|.+ |||+|+|++||||...+ ..+|||+||++.++ +|++.+++
T Consensus 1 g~h~~~I~~yS~~~~~~~~g~~~~i~S~~F~~~~gGy~W~i~~yP~G~~~~-~~~~lS~~L~l~~~~~d~~l~wpv~a~~ 79 (147)
T cd03776 1 GIYVWKIKNFSNLRRSMEAGSPVVIHSPGFYTSPPGYKLCARLNLSLPEAR-CPNYISLFVHLMQGENDSHLDWPFQGTI 79 (147)
T ss_pred CEEEEEECCHHHHHHHHhcCCCceEECCCcccCCCCceEEEEEEeCCCCCC-CCCEEEEEEEEeccCCCcccCCccccee
Confidence 689999999997654 677774 88999984 79999999999998753 57899999998653 48999999
Q ss_pred EEEEEecCCCCcceeeeccccccccCCeeec-----ccCccccccceeeccccccCCCccCCeEEEEEeee
Q 018260 100 ELTLVDQSGKGKHKVHSHFDRSLESGPYTLK-----YRGSMWGYKRFFRRAMLETSDFLKDDCLKINCTVG 165 (359)
Q Consensus 100 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~-----~~~~~~G~~~fi~~~~L~~~~~l~~d~l~i~~~v~ 165 (359)
+|+|+|+.+...+.... +... .....|. .....|||..||++++|+.++||.||+++|+|+|.
T Consensus 80 ~~~lldq~~~~~~~~~~-~~~~--~~~~~F~~p~~~~~~~~~G~~~fi~~~~Le~~~yl~dD~l~I~c~V~ 147 (147)
T cd03776 80 TLTLLDQSEPRQNIHET-MMSK--PELLAFQRPTTDRNPKGFGYVEFAHIEDLLQRGFVKNDTLLIKIEVN 147 (147)
T ss_pred EEEEECCCcccCccEEE-EEcC--CChHhhcCCCcCCCCCCeeEceeeEHHHhhhCCCccCCEEEEEEEEC
Confidence 99999998743321100 0000 0011232 12457999999999999888999999999999984
No 13
>cd03771 MATH_Meprin Meprin family, MATH domain; Meprins are multidomain, highly glycosylated extracellular metalloproteases, which are either anchored to the membrane or secreted into extracellular spaces. They are expressed in renal and intestinal brush border membranes, leukocytes, and cancer cells, and are capable of cleaving growth factors, cytokines, extracellular matrix proteins, and biologically active peptides. Meprin proteases are composed of two related subunits, alpha and beta, which form homo- or hetro-complexes where the basic unit is a disulfide-linked dimer. Despite their similarity, the two subunits differ in their ability to self-associate, in proteolytic processing during biosynthesis and in substrate specificity. Both subunits are synthesized as membrane spanning proteins, however, the alpha subunit is cleaved during biosynthesis and loses its transmembrane domain. Meprin beta forms homodimers or heterotetramers while meprin alpha oligomerizes into large complexes co
Probab=99.87 E-value=1e-21 Score=161.29 Aligned_cols=132 Identities=27% Similarity=0.443 Sum_probs=101.0
Q ss_pred eeEEEEEEccccccc-cCCCCCeeeecee-eecCeEEEEEEEcCCCCCCCCCCcEEEEEEeccC------Ccc-ceeeEE
Q 018260 30 NGSHHFTIKGYSLSK-GIGIGKHIASDNF-SVGGYQWAIYFYPDGKNPEDNSTYVSVFIALASE------GTD-VRALFE 100 (359)
Q Consensus 30 ~~~~~w~I~~fs~~~-~~~~~~~~~S~~f-~~gg~~W~l~~~p~g~~~~~~~~~lsl~L~~~~~------~w~-~~~~~~ 100 (359)
|..|+|+|+||+.++ +++.|+.+.|++| .+|||+|+|++||||... ..+||||||++.++ +|+ +.++++
T Consensus 1 cp~hvwkI~~yS~~~~~~~~g~~i~S~~FysvgGy~w~I~~YPnG~~~--~~~~lSlyL~L~~g~~d~~L~WP~v~a~~t 78 (167)
T cd03771 1 CPEAVWRVRNFSQLLETTPKGTKIYSPRFYSPEGYAFQVGLYPNGTES--YPGYTGLYFHLCSGENDDVLEWPCPNRQAT 78 (167)
T ss_pred CCeEEEEEcCchhhhhcCCCCCEEECCCCCccCCeEEEEEEEeCCCCC--CCCcceEEEEEecCCccccccCcceeEEEE
Confidence 568999999999985 6778899999999 899999999999999875 57899999999653 377 589999
Q ss_pred EEEEecCCCCcceeeeccccccccCC---------ee----------ec-------ccCccccccceeeccccccCCCcc
Q 018260 101 LTLVDQSGKGKHKVHSHFDRSLESGP---------YT----------LK-------YRGSMWGYKRFFRRAMLETSDFLK 154 (359)
Q Consensus 101 ~~l~~~~~~~~~~~~~~~~~~~~~~~---------~~----------f~-------~~~~~~G~~~fi~~~~L~~~~~l~ 154 (359)
++|+||..+.....+.+ ++++..+ +. .. .++.+|||..|+++++|+..+||+
T Consensus 79 ~~LlDQ~~~~~~r~~~~--~~~~~dp~~~~~~~~~~~~~rP~~~~~~~~~~~~~~~~~~~g~G~~~Fis~~~L~~r~ylk 156 (167)
T cd03771 79 MTLLDQDPDIQQRMSNQ--RSFTTDPSMTSSDNGEYFWDRPSKVGSYDTDTNGCTCYRGPGYGWSTFISHSRLRRRDFLK 156 (167)
T ss_pred EEEECCCCcccccCcce--EEEecCCcccccccccccccCCccccccccccccccccccCccccccceeHHHhccCCCCc
Confidence 99999974322111111 1111100 00 11 144589999999999998888999
Q ss_pred CCeEEEEEeee
Q 018260 155 DDCLKINCTVG 165 (359)
Q Consensus 155 ~d~l~i~~~v~ 165 (359)
||++.|+++++
T Consensus 157 ~dtl~i~~~~~ 167 (167)
T cd03771 157 GDDLIILLDFE 167 (167)
T ss_pred CCEEEEEEEeC
Confidence 99999998874
No 14
>cd03779 MATH_TRAF1 Tumor Necrosis Factor Receptor (TNFR) Associated Factor (TRAF) family, TRAF1 subfamily, TRAF domain, C-terminal MATH subdomain; TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses. TRAF1 expression is the most restricted among the TRAFs. It is found exclusively in activated lymphocytes, dendritic cells and certain epithelia. TRAF1 associates, directly or indirectly through heterodimerization with TRAF2, with the TNFR family receptors TNFR-2, CD30, RANK, CD40 and LMP1, among others. It also binds the intracellular proteins TRADD, TANK, TRIP, RIP1, RIP2 and FLIP. TRAF1 is unique among the TRAFs in that it lacks a RING domain, which is critical for the activation of nuclear factor-kappaB and Jun NH2-terminal kinase. Studies on TRAF1-deficient mice suggest that TRAF1 has a negative regulatory role in TNFR-mediat
Probab=99.87 E-value=8.5e-22 Score=158.90 Aligned_cols=130 Identities=21% Similarity=0.345 Sum_probs=99.0
Q ss_pred eEEEEEEcccccccc-CCC--CCeeeeceeeec--CeEEEEEEEcCCCCCCCCCCcEEEEEEeccC------CccceeeE
Q 018260 31 GSHHFTIKGYSLSKG-IGI--GKHIASDNFSVG--GYQWAIYFYPDGKNPEDNSTYVSVFIALASE------GTDVRALF 99 (359)
Q Consensus 31 ~~~~w~I~~fs~~~~-~~~--~~~~~S~~f~~g--g~~W~l~~~p~g~~~~~~~~~lsl~L~~~~~------~w~~~~~~ 99 (359)
|.++|+|+||++..+ ... ...+.||+|..+ ||+|+|++||||.+.+ ..+|+|+||++.++ .|++.+++
T Consensus 1 g~~~W~i~~f~~~~~~a~~~~~~~~~S~~Fyt~~~Gy~w~i~~ypnG~~~~-~~~~iSv~l~l~~g~~D~~l~wpv~~~~ 79 (147)
T cd03779 1 GTFLWKITDVSQKQRESSHGRDVSLCSPAFYTAKYGYKVCLRLYLNGDGAG-KGTHISLFFVIMKGEYDALLPWPFRHKV 79 (147)
T ss_pred CeEEEEECcHHHHHHHHhcCCCceEECCCcccCCCCceEEEEEEcCCCCCC-CCCEEEEEEEEecCCcccccCcceEEEE
Confidence 679999999986543 322 347999999854 9999999999998844 67899999999764 69999999
Q ss_pred EEEEEecCCCCcceeeeccccccccCCeeec----ccCccccccceeeccccccC--CCccCCeEEEEEeee
Q 018260 100 ELTLVDQSGKGKHKVHSHFDRSLESGPYTLK----YRGSMWGYKRFFRRAMLETS--DFLKDDCLKINCTVG 165 (359)
Q Consensus 100 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~----~~~~~~G~~~fi~~~~L~~~--~~l~~d~l~i~~~v~ 165 (359)
+|+|+||.+.+... .+. .... ....|. ..+..||+.+||++++|+.+ +||.||+++|+|+|.
T Consensus 80 tfsLlDq~~~~~~~-~~~-~~~~--~~~~F~rP~~~~n~~~G~~~Fi~~~~Le~s~~~ylkDD~~~Irc~V~ 147 (147)
T cd03779 80 TFMLLDQNNREHVI-DAF-RPDL--SSASFQRPVSDMNVASGCPLFFPLKKLQSPKHAYCKDDTIYIKCVVD 147 (147)
T ss_pred EEEEECCCCCCCCc-Eee-cCCc--ccccccCcccCCCCCcchhheeEHHHhcccCCCcEeCCEEEEEEEEC
Confidence 99999998654321 111 0000 012242 23457999999999999876 999999999999884
No 15
>cd03775 MATH_Ubp21p Ubiquitin-specific protease 21 (Ubp21p) family, MATH domain; composed of fungal proteins with similarity to Ubp21p of fission yeast. Ubp21p is a deubiquitinating enzyme that may be involved in the regulation of the protein kinase Prp4p, which controls the formation of active spliceosomes. Members of this family are similar to human HAUSP (Herpesvirus-associated ubiquitin-specific protease) in that they contain an N-terminal MATH domain and a C-terminal catalytic protease (C19 family) domain. HAUSP is also an ubiquitin-specific protease that specifically catalyzes the deubiquitylation of p53 and MDM2. The MATH domain of HAUSP contains the binding site for p53 and MDM2. Similarly, the MATH domain of members in this family may be involved in substrate binding.
Probab=99.87 E-value=1.5e-21 Score=157.27 Aligned_cols=118 Identities=26% Similarity=0.483 Sum_probs=95.8
Q ss_pred EEEEEEccccccccCCCCCeeeeceeeecCeEEEEEEEcCCCCCCCCCCcEEEEEEecc---------CCccceeeEEEE
Q 018260 32 SHHFTIKGYSLSKGIGIGKHIASDNFSVGGYQWAIYFYPDGKNPEDNSTYVSVFIALAS---------EGTDVRALFELT 102 (359)
Q Consensus 32 ~~~w~I~~fs~~~~~~~~~~~~S~~f~~gg~~W~l~~~p~g~~~~~~~~~lsl~L~~~~---------~~w~~~~~~~~~ 102 (359)
+|+|+|+|||.+ ++.+.|++|.+||++|+|.+||+|+.. .+|+|+||.+.+ .+|.+.|+|+++
T Consensus 2 ~f~w~I~~fS~~-----~~~~~S~~F~vGG~~W~l~~yP~G~~~---~~~iSlyL~l~~~~~~~~~~~~~~~v~a~f~~~ 73 (134)
T cd03775 2 SFTWRIKNWSEL-----EKKVHSPKFKCGGFEWRILLFPQGNSQ---TGGVSIYLEPHPEEEEKAPLDEDWSVCAQFALV 73 (134)
T ss_pred cEEEEECCcccC-----CcceeCCCEEECCeeEEEEEeCCCCCC---CCeEEEEEEecCcccccccCCCCCeEEEEEEEE
Confidence 589999999984 468999999999999999999999763 689999999853 357899999999
Q ss_pred EEecCCCCcceeeeccccccccCCeeecccCccccccceeeccccc------cCCCccCCeEEEEEeee
Q 018260 103 LVDQSGKGKHKVHSHFDRSLESGPYTLKYRGSMWGYKRFFRRAMLE------TSDFLKDDCLKINCTVG 165 (359)
Q Consensus 103 l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~G~~~fi~~~~L~------~~~~l~~d~l~i~~~v~ 165 (359)
|+|+.+...... . ...+.|......|||.+|+++++|+ ++|||.||+|+|++.|.
T Consensus 74 l~n~~~~~~~~~-----~---~~~~~F~~~~~~wG~~~fi~~~~L~~~~~~~~~g~l~nD~l~I~~~~~ 134 (134)
T cd03775 74 ISNPGDPSIQLS-----N---VAHHRFNAEDKDWGFTRFIELRKLAHRTPDKPSPFLENGELNITVYVR 134 (134)
T ss_pred EEcCCCCccceE-----c---cceeEeCCCCCCCChhHcccHHHHcccccCCCCceeECCEEEEEEEEC
Confidence 999964322111 0 1235666566799999999999996 47999999999998873
No 16
>cd03773 MATH_TRIM37 Tripartite motif containing protein 37 (TRIM37) family, MATH domain; TRIM37 is a peroxisomal protein and is a member of the tripartite motif (TRIM) protein subfamily, also known as the RING-B-box-coiled-coil (RBCC) subfamily of zinc-finger proteins. Mutations in the human TRIM37 gene (also known as MUL) cause Mulibrey (muscle-liver-brain-eye) nanism, a rare growth disorder of prenatal onset characterized by dysmorphic features, pericardial constriction and hepatomegaly. TRIM37, similar to other TRIMs, contains a cysteine-rich, zinc-binding RING-finger domain followed by another cysteine-rich zinc-binding domain, the B-box, and a coiled-coil domain. TRIM37 is autoubiquitinated in a RING domain-dependent manner, indicating that it functions as an ubiquitin E3 ligase. In addition to the tripartite motif, TRIM37 also contains a MATH domain C-terminal to the coiled-coil domain. The MATH domain of TRIM37 has been shown to interact with the TRAF domain of six known TRAFs i
Probab=99.87 E-value=1.1e-21 Score=157.83 Aligned_cols=124 Identities=28% Similarity=0.554 Sum_probs=98.9
Q ss_pred eeEEEEEEccccccccCCCCCeeeeceeeecCeEEEEEEEcCCCCCCCCCCcEEEEEEeccC-CccceeeEEEEEEecCC
Q 018260 30 NGSHHFTIKGYSLSKGIGIGKHIASDNFSVGGYQWAIYFYPDGKNPEDNSTYVSVFIALASE-GTDVRALFELTLVDQSG 108 (359)
Q Consensus 30 ~~~~~w~I~~fs~~~~~~~~~~~~S~~f~~gg~~W~l~~~p~g~~~~~~~~~lsl~L~~~~~-~w~~~~~~~~~l~~~~~ 108 (359)
.++++|+|+|||.+++ .++++.|++|.+||++|+|.+||+|.... ..+|||+||.+.++ .|.+.++|+++|+|+.+
T Consensus 4 ~~~~~~~I~~fS~~~~--~~~~~~S~~F~vgG~~W~i~~yP~G~~~~-~~~~lSl~L~l~~~~~~~~~~~~~l~llnq~~ 80 (132)
T cd03773 4 YDSATFTLENFSTLRQ--SADPVYSDPLNVDGLCWRLKVYPDGNGEV-RGNFLSVFLELCSGLGEASKYEYRVEMVHQAN 80 (132)
T ss_pred CcccEEEECChhhhhc--CCcceeCCCeEeCCccEEEEEECCCCCCC-CCCEEEEEEEeecCCCCceeEEEEEEEEcCCC
Confidence 5689999999998863 57899999999999999999999998743 57899999998764 57788999999999853
Q ss_pred CCcceeeeccccccccCCeeecccCccccccceeeccccccCCCccC--CeEEEEEeee
Q 018260 109 KGKHKVHSHFDRSLESGPYTLKYRGSMWGYKRFFRRAMLETSDFLKD--DCLKINCTVG 165 (359)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~f~~~~~~~G~~~fi~~~~L~~~~~l~~--d~l~i~~~v~ 165 (359)
.... .... ..+.|. ...+|||..|+++++|+++|||.| |+|+|+|.|+
T Consensus 81 ~~~~-~~~~-------~~~~f~-~~~~wG~~~Fi~~~~L~~~gfl~~~~D~l~i~~~v~ 130 (132)
T cd03773 81 PTKN-IKRE-------FASDFE-VGECWGYNRFFRLDLLINEGYLLPENDTLILRFSVR 130 (132)
T ss_pred Cccc-eEEe-------cccccc-CCCCcCHHHhccHHHHhhCCCcCCCCCEEEEEEEEe
Confidence 2221 1111 112333 246799999999999987899998 9999999985
No 17
>KOG4591 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=99.83 E-value=7.9e-21 Score=154.56 Aligned_cols=160 Identities=26% Similarity=0.348 Sum_probs=138.8
Q ss_pred CCchHHHHHHhhcCCCCCCeEEEeC---CeEEeeehhhhhccCHHHHHhhccccccCcceEEEcCCCHHHHHHHHHHHcc
Q 018260 183 ESDIGDHFGMLLENEESSDITFNVV---GEKFHAHKLVLAARSPVFETEFLDAMEEDNHEIVVTDMEPKVFKALLHFIYK 259 (359)
Q Consensus 183 ~~~l~~~l~~~~~~~~~~Dv~i~v~---~~~~~~hk~iLa~~S~~F~~~~~~~~~e~~~~i~l~~~~~~~~~~~L~~iY~ 259 (359)
++.+..-..++++.+.++|++|.++ ++.++|||.|||+||.+++ |.++..|...+..++|.++++|..+++||||
T Consensus 50 ~SRLLaitadL~Ek~qfSDlk~K~~gns~k~i~AHKfVLAARsD~Wk--faN~~dekse~~~~dDad~Ea~~t~iRWIYT 127 (280)
T KOG4591|consen 50 ISRLLAITADLLEKEQFSDLKFKFAGNSDKHIPAHKFVLAARSDFWK--FANGGDEKSEELDLDDADFEAFHTAIRWIYT 127 (280)
T ss_pred HHHHHHHHHHHhhcccccceeEEecCCccccCchhhhhhhhhcchhh--hccCCCcchhhhcccccCHHHHHHhheeeec
Confidence 3556667778999999999999998 5789999999999999887 3333333366788899999999999999999
Q ss_pred CCCCCcccCCCCCCCCCCCCcHHHHHHHHHHhhccChhHHHHHHHHHHhccCChhhHHHHHHHHHhcCChHHHHHHHHHH
Q 018260 260 DTLIEDGECSASSSSCVPSVSDTLEAKLLAAAEKYVLPRLRLMCESVLCKVISVNSVAHTLALADRHCAMDLKSVCLKFA 339 (359)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~A~~~~~~~L~~~ce~~L~~~l~~~n~~~~l~~A~~~~~~~L~~~~~~~i 339 (359)
++++.. .+++.+.++.++|++|+++.|+..|++-+...++.+||+.++++|++.++.+|...|...|
T Consensus 128 DEidfk-------------~dD~~L~el~e~An~FqLe~Lke~C~k~l~a~l~V~NCIk~Ye~AEe~n~~qL~n~~~eiI 194 (280)
T KOG4591|consen 128 DEIDFK-------------EDDEFLLELCELANRFQLELLKERCEKGLGALLHVDNCIKFYEFAEELNARQLMNVAAEII 194 (280)
T ss_pred cccccc-------------cchHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHhhHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 998542 4667889999999999999999999999999999999999999999999999999999999
Q ss_pred HHhHHHHhcCCcccCCccc
Q 018260 340 AENLVGGLGSIENLGIKAA 358 (359)
Q Consensus 340 ~~~~~~~~~~~~f~~l~~~ 358 (359)
..+|..+ ...+|.+|+++
T Consensus 195 A~~W~dL-~~a~FaqMs~a 212 (280)
T KOG4591|consen 195 AGAWDDL-GKADFAQMSAA 212 (280)
T ss_pred Hhhcccc-ChHHHHhccHH
Confidence 9999865 45677777764
No 18
>cd00121 MATH MATH (meprin and TRAF-C homology) domain; an independent folding unit with an eight-stranded beta-sandwich structure found in meprins, TRAFs and other proteins. Meprins comprise a class of extracellular metalloproteases which are anchored to the membrane and are capable of cleaving growth factors, extracellular matrix proteins, and biologically active peptides. TRAF molecules serve as adapter proteins that link cell surface receptors of the Tumor Necrosis Factor and 1nterleukin-1/Toll-like families to downstream kinase cascades, which results in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses in the immune and inflammatory systems. Other members include the ubiquitin ligases, TRIM37 and SPOP, and the ubiquitin-specific proteases, HAUSP and Ubp21p. A large number of uncharacterized members mostly from lineage-specific expansions in C. elegans and rice contain MATH and BTB domains, similar to SPOP. The MATH doma
Probab=99.81 E-value=5.4e-19 Score=140.51 Aligned_cols=120 Identities=36% Similarity=0.622 Sum_probs=96.1
Q ss_pred eEEEEEEccccccccCCCCCeeeeceeeecCeEEEEEEEcCCCCCCCCCCcEEEEEEeccC-----CccceeeEEEEEEe
Q 018260 31 GSHHFTIKGYSLSKGIGIGKHIASDNFSVGGYQWAIYFYPDGKNPEDNSTYVSVFIALASE-----GTDVRALFELTLVD 105 (359)
Q Consensus 31 ~~~~w~I~~fs~~~~~~~~~~~~S~~f~~gg~~W~l~~~p~g~~~~~~~~~lsl~L~~~~~-----~w~~~~~~~~~l~~ 105 (359)
++|+|+|.+|+. ..++.+.|+.|.++|+.|+|.+||+|... +.+|+|+||.|... .|.+.+++++.|++
T Consensus 1 ~~~~~~i~~~~~----~~~~~~~S~~f~~~g~~W~l~~~p~~~~~--~~~~lsv~L~~~~~~~~~~~~~~~~~~~~~l~~ 74 (126)
T cd00121 1 GKHTWKIVNFSE----LEGESIYSPPFEVGGYKWRIRIYPNGDGE--SGDYLSLYLELDKGESDLEKWSVRAEFTLKLVN 74 (126)
T ss_pred CEEEEEECCCCC----CCCcEEECCCEEEcCEeEEEEEEcCCCCC--CCCEEEEEEEecCCCCCCCCCcEEEEEEEEEEC
Confidence 479999999987 34789999999999999999999999764 57899999999764 49999999999999
Q ss_pred cCCCCcceeeeccccccccCCeee-cccCccccccceeeccccccCCCccCCeEEEEEeee
Q 018260 106 QSGKGKHKVHSHFDRSLESGPYTL-KYRGSMWGYKRFFRRAMLETSDFLKDDCLKINCTVG 165 (359)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~f-~~~~~~~G~~~fi~~~~L~~~~~l~~d~l~i~~~v~ 165 (359)
+++.+...... ...+ .....+|||.+|++|++|.+..++.||+++|+|+|.
T Consensus 75 ~~~~~~~~~~~---------~~~~~~~~~~~~G~~~fi~~~~l~~~~~~~~d~l~i~~~v~ 126 (126)
T cd00121 75 QNGGKSLSKSF---------THVFFSEKGSGWGFPKFISWDDLEDSYYLVDDSLTIEVEVK 126 (126)
T ss_pred CCCCccceEec---------cCCcCCCCCCCCChHHeeEHHHhccCCcEECCEEEEEEEEC
Confidence 98333211110 1112 234689999999999999866558999999999873
No 19
>KOG2075 consensus Topoisomerase TOP1-interacting protein BTBD1 [Function unknown]
Probab=99.81 E-value=3.9e-19 Score=162.67 Aligned_cols=165 Identities=30% Similarity=0.425 Sum_probs=151.6
Q ss_pred cccccCCCchHHHHHHhhcCCCCCCeEEEeCC-----eEEeeehhhhhccCHHHHHhhccccccC-cceEEEcCCCHHHH
Q 018260 177 HSIQVPESDIGDHFGMLLENEESSDITFNVVG-----EKFHAHKLVLAARSPVFETEFLDAMEED-NHEIVVTDMEPKVF 250 (359)
Q Consensus 177 ~~~~~p~~~l~~~l~~~~~~~~~~Dv~i~v~~-----~~~~~hk~iLa~~S~~F~~~~~~~~~e~-~~~i~l~~~~~~~~ 250 (359)
+..+.+.++.......+++++..+|+.++|++ ++++|||.|||..|.+|.+||++++.+. ..+|.++|+.+.+|
T Consensus 92 ~nwq~~~~t~~er~~~l~~n~~~adv~fivg~~~~~~q~~paHk~vla~gS~VFdaMf~g~~a~~~s~ei~lpdvepaaF 171 (521)
T KOG2075|consen 92 PNWQAQKETMRERQAALFNNELLADVHFIVGEEDGGSQRIPAHKLVLADGSDVFDAMFYGGLAEDASLEIRLPDVEPAAF 171 (521)
T ss_pred cccccchhhHHHhhHhhccCcccceeEEEeccCCCcccccchhhhhhhcchHHHHHHhccCcccccCceeecCCcChhHh
Confidence 45566677888888999999999999999974 6999999999999999999999999999 99999999999999
Q ss_pred HHHHHHHccCCCCCcccCCCCCCCCCCCCcHHHHHHHHHHhhccChhHHHHHHHHHHhccCChhhHHHHHHH-HHhcCCh
Q 018260 251 KALLHFIYKDTLIEDGECSASSSSCVPSVSDTLEAKLLAAAEKYVLPRLRLMCESVLCKVISVNSVAHTLAL-ADRHCAM 329 (359)
Q Consensus 251 ~~~L~~iY~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~A~~~~~~~L~~~ce~~L~~~l~~~n~~~~l~~-A~~~~~~ 329 (359)
..+|+|||++.+ .+..+++..+|.+|++|.++.|.+.|-++|...+..+|.+..|-- |..++-+
T Consensus 172 l~~L~flYsdev---------------~~~~dtvi~tl~~AkKY~VpaLer~CVkflr~~l~~~naf~~L~q~A~lf~ep 236 (521)
T KOG2075|consen 172 LAFLRFLYSDEV---------------KLAADTVITTLYAAKKYLVPALERQCVKFLRKNLMADNAFLELFQRAKLFDEP 236 (521)
T ss_pred HHHHHHHhcchh---------------hhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhcCH
Confidence 999999999988 478899999999999999999999999999998888877766665 9999999
Q ss_pred HHHHHHHHHHHHhHHHHhcCCcccCCc
Q 018260 330 DLKSVCLKFAAENLVGGLGSIENLGIK 356 (359)
Q Consensus 330 ~L~~~~~~~i~~~~~~~~~~~~f~~l~ 356 (359)
.|...|++.|..+++..+..+.|.++.
T Consensus 237 ~Li~~c~e~id~~~~~al~~EGf~did 263 (521)
T KOG2075|consen 237 SLISICLEVIDKSFEDALTPEGFCDID 263 (521)
T ss_pred HHHHHHHHHhhhHHHhhhCccceeehh
Confidence 999999999999999999999998765
No 20
>PF00651 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (for BR-C, ttk and bab) [] or POZ (for Pox virus and Zinc finger) [] domain is present near the N terminus of a fraction of zinc finger (IPR007087 from INTERPRO) proteins and in proteins that contain the IPR006652 from INTERPRO motif such as Kelch and a family of pox virus proteins. The BTB/POZ domain mediates homomeric dimerisation and in some instances heteromeric dimerisation []. The structure of the dimerised PLZF BTB/POZ domain has been solved and consists of a tightly intertwined homodimer. The central scaffolding of the protein is made up of a cluster of alpha-helices flanked by short beta-sheets at both the top and bottom of the molecule []. POZ domains from several zinc finger proteins have been shown to mediate transcriptional repression and to interact with components of histone deacetylase co-repressor complexes including N-CoR and SMRT [, , ]. The POZ or BTB domain is also known as BR-C/Ttk or ZiN.; GO: 0005515 protein binding; PDB: 3M5B_A 1R28_B 3LBZ_A 3E4U_F 3BIM_B 1R2B_A 1R29_A 2VPK_A 2YY9_B 3GA1_A ....
Probab=99.80 E-value=9.6e-20 Score=141.99 Aligned_cols=106 Identities=35% Similarity=0.592 Sum_probs=93.6
Q ss_pred HHHhhcCCCCCCeEEEeC-CeEEeeehhhhhccCHHHHHhhccc-cccC-cceEEEcCCCHHHHHHHHHHHccCCCCCcc
Q 018260 190 FGMLLENEESSDITFNVV-GEKFHAHKLVLAARSPVFETEFLDA-MEED-NHEIVVTDMEPKVFKALLHFIYKDTLIEDG 266 (359)
Q Consensus 190 l~~~~~~~~~~Dv~i~v~-~~~~~~hk~iLa~~S~~F~~~~~~~-~~e~-~~~i~l~~~~~~~~~~~L~~iY~~~~~~~~ 266 (359)
|.++++++.++|++|.++ +++|+|||.||+++|+||+.||.+. +.+. ..+|.++++++++|+.+|+|+|++.++
T Consensus 1 ~~~~~~~~~~~D~~i~v~d~~~~~vhk~iL~~~S~~F~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~Y~~~~~--- 77 (111)
T PF00651_consen 1 LNDLFNSNEFSDVTIRVGDGKTFYVHKNILAARSPYFRNLFEGSKFKESTVPEISLPDVSPEAFEAFLEYMYTGEIE--- 77 (111)
T ss_dssp HHHHHHHTTS--EEEEETTTEEEEE-HHHHHHHBHHHHHHHTTTTSTTSSEEEEEETTSCHHHHHHHHHHHHHSEEE---
T ss_pred ChHHHcCCCCCCEEEEECCCEEEeechhhhhccchhhhhcccccccccccccccccccccccccccccccccCCccc---
Confidence 456788899999999999 8999999999999999999999988 5666 668999999999999999999999884
Q ss_pred cCCCCCCCCCCCCc-HHHHHHHHHHhhccChhHHHHHHHHHHhcc
Q 018260 267 ECSASSSSCVPSVS-DTLEAKLLAAAEKYVLPRLRLMCESVLCKV 310 (359)
Q Consensus 267 ~~~~~~~~~~~~~~-~~~~~~ll~~A~~~~~~~L~~~ce~~L~~~ 310 (359)
+. .+++.+++.+|++|+++.|+..|+++|.+.
T Consensus 78 ------------~~~~~~~~~ll~lA~~~~~~~L~~~~~~~l~~~ 110 (111)
T PF00651_consen 78 ------------INSDENVEELLELADKLQIPELKKACEKFLQES 110 (111)
T ss_dssp ------------EE-TTTHHHHHHHHHHTTBHHHHHHHHHHHHHH
T ss_pred ------------CCHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhC
Confidence 55 788999999999999999999999999753
No 21
>cd03778 MATH_TRAF2 Tumor Necrosis Factor Receptor (TNFR) Associated Factor (TRAF) family, TRAF2 subfamily, TRAF domain; TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses. TRAF2 associates with the receptors TNFR-1, TNFR-2, RANK (which mediates differentiation and maturation of osteoclasts) and CD40 (which is important for the proliferation and activation of B cells), among others. It regulates distinct pathways that lead to the activation of nuclear factor-kappaB and Jun NH2-terminal kinases. TRAF2 also indirectly associates with death receptors through its interaction with TRADD (TNFR-associated death domain protein). It is involved in regulating oxidative stress or ROS-induced cell death and in the preconditioning of cells by sublethal stress for protection from subsequent injury. TRAF2 contains a RING finger domain, five z
Probab=99.78 E-value=2.1e-18 Score=140.64 Aligned_cols=135 Identities=20% Similarity=0.295 Sum_probs=98.5
Q ss_pred eeeeEEEEEEccccccccCC---CCCeeeeceeee--cCeEEEEEEEcCCCCCCCCCCcEEEEEEeccC------Cccce
Q 018260 28 TINGSHHFTIKGYSLSKGIG---IGKHIASDNFSV--GGYQWAIYFYPDGKNPEDNSTYVSVFIALASE------GTDVR 96 (359)
Q Consensus 28 ~~~~~~~w~I~~fs~~~~~~---~~~~~~S~~f~~--gg~~W~l~~~p~g~~~~~~~~~lsl~L~~~~~------~w~~~ 96 (359)
...|.++|+|.||+.+.+-. ....++||+|.. +||+|+|++||||++. +.+.|||||+++.++ +|++.
T Consensus 16 ~~~g~fiWkI~~fs~~~~~a~~~~~~~i~Sp~Fyt~~~GYk~~l~~ylnG~g~-~~g~~LSly~~l~~Ge~D~~L~WPf~ 94 (164)
T cd03778 16 TYDGVFIWKISDFARKRQEAVAGRIPAIFSPAFYTSRYGYKMCLRIYLNGDGT-GRGTHLSLFFVVMKGPNDALLRWPFN 94 (164)
T ss_pred ccCCEEEEEECcHHHHHHHHhcCCCceEECCCcccCCCCeEEEEEEEeCCCCC-CCCCEEEEEEEEecCCcCcccCCcee
Confidence 45699999999999865422 234899999974 5999999999999874 367899999998763 49999
Q ss_pred eeEEEEEEecCCCCcceeeeccccccccCC-eee-cccCccccccceeecccccc-CCCccCCeEEEEEeee
Q 018260 97 ALFELTLVDQSGKGKHKVHSHFDRSLESGP-YTL-KYRGSMWGYKRFFRRAMLET-SDFLKDDCLKINCTVG 165 (359)
Q Consensus 97 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~f-~~~~~~~G~~~fi~~~~L~~-~~~l~~d~l~i~~~v~ 165 (359)
.+++++|+||.+.. +.. ..+........ .+. ...+..||+..|++.++|.. .+|+.||++.|+|.|.
T Consensus 95 ~~itl~llDQ~~r~-hi~-~~~~pd~~~~~f~RP~~~~n~~~G~~~Fv~l~~l~~~~~Yv~dDtlfIk~~Vd 164 (164)
T cd03778 95 QKVTLMLLDQNNRE-HVI-DAFRPDVTSSSFQRPVNDMNIASGCPLFCPVSKXEAKNSYVRDDAIFIKAIVD 164 (164)
T ss_pred eEEEEEEECCCCCC-cce-eEEEcCcchHhcCCCCcccccCcCcceEEEhhHccccCCcccCCeEEEEEEEC
Confidence 99999999997422 111 11110000000 011 22345799999999999965 6999999999999873
No 22
>PF00917 MATH: MATH domain; InterPro: IPR002083 Although apparently functionally unrelated, intracellular TRAFs and extracellular meprins share a conserved region of about 180 residues, the meprin and TRAF homology (MATH) domain []. Meprins are mammalian tissue-specific metalloendopeptidases of the astacin family implicated in developmental, normal and pathological processes by hydrolysing a variety of proteins. Various growth factors, cytokines, and extracellular matrix proteins are substrates for meprins. They are composed of five structural domains: an N-terminal endopeptidase domain, a MAM domain (see PDOC00604 from PROSITEDOC), a MATH domain, an EGF-like domain (see PDOC00021 from PROSITEDOC) and a C-terminal transmembrane region. Meprin A and B form membrane bound homotetramer whereas homooligomers of meprin A are secreted. A proteolitic site adjacent to the MATH domain, only present in meprin A, allows the release of the protein from the membrane []. TRAF proteins were first isolated by their ability to interact with TNF receptors []. They promote cell survival by the activation of downstream protein kinases and, finally, transcription factors of the NF-kB and AP-1 family. The TRAF proteins are composed of 3 structural domains: a RING finger (see PDOC00449 from PROSITEDOC) in the N-terminal part of the protein, one to seven TRAF zinc fingers (see PDOC50145 from PROSITEDOC) in the middle and the MATH domain in the C-terminal part []. The MATH domain is necessary and sufficient for self-association and receptor interaction. From the structural analysis two consensus sequence recognised by the TRAF domain have been defined: a major one, [PSAT]x[QE]E and a minor one, PxQxxD []. The structure of the TRAF2 protein reveals a trimeric self-association of the MATH domain []. The domain forms a new, light-stranded antiparallel beta sandwich structure. A coiled-coil region adjacent to the MATH domain is also important for the trimerisation. The oligomerisation is essential for establishing appropriate connections to form signalling complexes with TNF receptor-1. The ligand binding surface of TRAF proteins is located in beta-strands 6 and 7 [].; GO: 0005515 protein binding; PDB: 1D00_E 1CZY_A 1D01_F 1CA9_A 1D0J_D 1F3V_B 1CA4_C 1D0A_A 1QSC_C 1CZZ_C ....
Probab=99.75 E-value=1e-17 Score=132.16 Aligned_cols=113 Identities=33% Similarity=0.541 Sum_probs=89.9
Q ss_pred EccccccccCCCCCeeeeceeeecCeEEEEEEEcCCCCCCCCCCcEEEEEEeccC------CccceeeEEEEEEecCCCC
Q 018260 37 IKGYSLSKGIGIGKHIASDNFSVGGYQWAIYFYPDGKNPEDNSTYVSVFIALASE------GTDVRALFELTLVDQSGKG 110 (359)
Q Consensus 37 I~~fs~~~~~~~~~~~~S~~f~~gg~~W~l~~~p~g~~~~~~~~~lsl~L~~~~~------~w~~~~~~~~~l~~~~~~~ 110 (359)
|+||+.++ ..+.++.|+.|.++|++|+|.+||+|+ .+++++||.|..+ +|++.+++++.++++.+..
T Consensus 1 i~nfs~l~--~~~~~~~s~~~~~~g~~W~l~~~~~~~-----~~~l~~~L~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~ 73 (119)
T PF00917_consen 1 IKNFSKLK--EGEEYSSSFVFSHGGYPWRLKVYPKGN-----GKYLSVYLHCDKGENDSDLEWSIEAEFRFRLLNQNGKS 73 (119)
T ss_dssp ETTGGGHH--TSEEEEEEEESSTTSEEEEEEEETTES-----TTEEEEEEEEECSTTGGGSSSSEEEEEEEEEE-TTSCE
T ss_pred CcccceEe--CCCcEECCCeEEECCEEEEEEEEeCCC-----cCcEEEEEEEeecccccccceeeeEEEEEEEecCCCCc
Confidence 78999988 223455669999999999999999975 5789999999653 7999999999999998876
Q ss_pred cceeeeccccccccCCeeecccCccccccceeeccccccCCCccCCeEEEEEeeee
Q 018260 111 KHKVHSHFDRSLESGPYTLKYRGSMWGYKRFFRRAMLETSDFLKDDCLKINCTVGV 166 (359)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~f~~~~~~~G~~~fi~~~~L~~~~~l~~d~l~i~~~v~i 166 (359)
..+... .+.|. ....|||.+|++|++|.+..|+.||+++|+|+|.|
T Consensus 74 ~~~~~~---------~~~F~-~~~~~g~~~fi~~~~l~~~~fl~dd~l~ie~~v~I 119 (119)
T PF00917_consen 74 ISKRIK---------SHSFN-NPSSWGWSSFISWEDLEDPYFLVDDSLTIEVEVKI 119 (119)
T ss_dssp EEEEEE---------CEEEC-TTSEEEEEEEEEHHHHTTCTTSBTTEEEEEEEEEE
T ss_pred ceeeee---------eeEEe-eecccchhheeEHHHhCccCCeECCEEEEEEEEEC
Confidence 322111 13443 34789999999999998666899999999999975
No 23
>KOG4682 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=99.70 E-value=8.3e-17 Score=144.27 Aligned_cols=152 Identities=20% Similarity=0.251 Sum_probs=139.0
Q ss_pred HHHhhcCCCCCCeEEEeCCeEEeeehhhhhccCHHHHHhhccccccC-cceEEEc----CCCHHHHHHHHHHHccCCCCC
Q 018260 190 FGMLLENEESSDITFNVVGEKFHAHKLVLAARSPVFETEFLDAMEED-NHEIVVT----DMEPKVFKALLHFIYKDTLIE 264 (359)
Q Consensus 190 l~~~~~~~~~~Dv~i~v~~~~~~~hk~iLa~~S~~F~~~~~~~~~e~-~~~i~l~----~~~~~~~~~~L~~iY~~~~~~ 264 (359)
+..++.+++.+||++.+-|++.+.||.-|. +|+||++||.|-++|+ ...|.+. .++..++...+.-+|.+++
T Consensus 60 yq~lf~q~enSDv~l~alg~eWrlHk~yL~-QS~yf~smf~Gtw~es~~~iIqleI~Dp~Id~~al~~a~gsLY~dEv-- 136 (488)
T KOG4682|consen 60 YQNLFLQGENSDVILEALGFEWRLHKPYLF-QSEYFKSMFSGTWKESSMNIIQLEIPDPNIDVVALQVAFGSLYRDEV-- 136 (488)
T ss_pred HHHHHhcCCCcceehhhccceeeeeeeeee-ccHHHHHHhccccChhhCceEEEEcCCCcccHHHHHHHHhhhhhhhe--
Confidence 557778899999999999999999999986 8999999999999999 7777663 6899999999999999999
Q ss_pred cccCCCCCCCCCCCCcHHHHHHHHHHhhccChhHHHHHHHHHHhccCChhhHHHHHHHHHhcCChHHHHHHHHHHHHhHH
Q 018260 265 DGECSASSSSCVPSVSDTLEAKLLAAAEKYVLPRLRLMCESVLCKVISVNSVAHTLALADRHCAMDLKSVCLKFAAENLV 344 (359)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~ll~~A~~~~~~~L~~~ce~~L~~~l~~~n~~~~l~~A~~~~~~~L~~~~~~~i~~~~~ 344 (359)
.+..+.+..+|++|..+++++|.++|.+.+++.++++|++..+..|.+|+...+++.|++++..|+-
T Consensus 137 -------------eI~l~dv~gvlAaA~~lqldgl~qrC~evMie~lspkta~~yYea~ckYgle~vk~kc~ewl~~nl~ 203 (488)
T KOG4682|consen 137 -------------EIKLSDVVGVLAAACLLQLDGLIQRCGEVMIETLSPKTACGYYEAACKYGLESVKKKCLEWLLNNLM 203 (488)
T ss_pred -------------eccHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcChhhhhHhhhhhhhhhhHHHHHHHHHHHHHhhH
Confidence 5899999999999999999999999999999999999999999999999999999999999999988
Q ss_pred HHhcCCcccCCcc
Q 018260 345 GGLGSIENLGIKA 357 (359)
Q Consensus 345 ~~~~~~~f~~l~~ 357 (359)
.+....-+.+++.
T Consensus 204 ~i~~~q~l~ei~~ 216 (488)
T KOG4682|consen 204 TIQNVQLLKEISI 216 (488)
T ss_pred hhhhHHHHHhcCH
Confidence 8877665555543
No 24
>cd03783 MATH_Meprin_Alpha Meprin family, Alpha subunit, MATH domain; Meprins are multidomain extracellular metalloproteases capable of cleaving growth factors, cytokines, extracellular matrix proteins, and biologically active peptides. They are composed of two related subunits, alpha and beta, which form homo- or hetro-complexes where the basic unit is a disulfide-linked dimer. The alpha subunit is synthesized as a membrane spanning protein, however, it is cleaved during biosynthesis and loses its transmembrane domain. It oligomerizes into large complexes, containing 10-100 subunits (dimers that associate noncovalently), which are secreted as latent proteases and can move through extracellular spaces in a nondestructive manner. This allows delivery of the concentrated protease to sites containing activating enzymes, such as sites of inflammation, infection or cancerous growth. Meprin alpha shows preference for small or hydrophobic residues at the P1 and P1' sites of its substrate. Both
Probab=99.70 E-value=1.2e-16 Score=129.60 Aligned_cols=134 Identities=21% Similarity=0.358 Sum_probs=99.0
Q ss_pred eeEEEEEEccccccccC-CCCCeeeeceeee-cCeEEEEEEEcCCCCCCCCCCcEEEEEEeccC------Cccc-eeeEE
Q 018260 30 NGSHHFTIKGYSLSKGI-GIGKHIASDNFSV-GGYQWAIYFYPDGKNPEDNSTYVSVFIALASE------GTDV-RALFE 100 (359)
Q Consensus 30 ~~~~~w~I~~fs~~~~~-~~~~~~~S~~f~~-gg~~W~l~~~p~g~~~~~~~~~lsl~L~~~~~------~w~~-~~~~~ 100 (359)
|..++|+|.||+++.+- ..+..++||+|.. .||+.+|++|+||+...+.++|+|||+++.++ +|++ .-+++
T Consensus 1 cp~~iWkI~nfs~~~~~a~~~~~i~Sp~Fyt~~GYk~~l~~~lng~~~~~~g~~lSl~~~lm~Ge~D~~L~WP~~~~~it 80 (167)
T cd03783 1 CPNAVWRVRNFSQILENTTKGDVLQSPRFYSPEGYGYGVSLYPLSNESDYSGNYTGLYFHLCSGENDAVLEWPALNRQAI 80 (167)
T ss_pred CCceeEEECcHHHHHHhCcCCCeEECCCCccCCCceEEEEEEecCCCCCCCCCEEEEEEEEecccCCCcccCCCcCCEEE
Confidence 45789999999976543 3577899999976 59999999999998754467899999999774 4995 56999
Q ss_pred EEEEecCCCCcceeeeccccccccCC----------eee--------------cccCccccccceeeccccccCCCccCC
Q 018260 101 LTLVDQSGKGKHKVHSHFDRSLESGP----------YTL--------------KYRGSMWGYKRFFRRAMLETSDFLKDD 156 (359)
Q Consensus 101 ~~l~~~~~~~~~~~~~~~~~~~~~~~----------~~f--------------~~~~~~~G~~~fi~~~~L~~~~~l~~d 156 (359)
++|+||+.+.....+. .++++... ..| ..++.++||..|++++.|+..+|++||
T Consensus 81 l~llDQ~~~~~~r~~~--~~sf~~d~~~~~~~~~~~~~f~rP~~~~~~~~~~~~~~~~gfG~~~Fish~~L~~r~yikdD 158 (167)
T cd03783 81 ITVLDQDPDVRLRMSS--SRSFTTDKSQTSSAINGTLRWDRPSRVGTYDTSCDCFRGIDFGWSTFISHSQLRRRSFLKND 158 (167)
T ss_pred EEEEcCCcchhhcccc--ceeeecCCCcccccccccccccCCcccccccccccccCCcccccccceeHHHHhhCCcccCC
Confidence 9999997532211111 01111100 001 124668999999999999888999999
Q ss_pred eEEEEEeee
Q 018260 157 CLKINCTVG 165 (359)
Q Consensus 157 ~l~i~~~v~ 165 (359)
++.|.++++
T Consensus 159 tlfI~~~~~ 167 (167)
T cd03783 159 DLIIFVDFE 167 (167)
T ss_pred eEEEEEecC
Confidence 999988763
No 25
>smart00225 BTB Broad-Complex, Tramtrack and Bric a brac. Domain in Broad-Complex, Tramtrack and Bric a brac. Also known as POZ (poxvirus and zinc finger) domain. Known to be a protein-protein interaction motif found at the N-termini of several C2H2-type transcription factors as well as Shaw-type potassium channels. Known structure reveals a tightly intertwined dimer formed via interactions between N-terminal strand and helix structures. However in a subset of BTB/POZ domains, these two secondary structures appear to be missing. Be aware SMART predicts BTB/POZ domains without the beta1- and alpha1-secondary structures.
Probab=99.69 E-value=9.4e-17 Score=119.46 Aligned_cols=89 Identities=40% Similarity=0.642 Sum_probs=83.0
Q ss_pred CeEEEeCCeEEeeehhhhhccCHHHHHhhccccccC-cceEEEcCCCHHHHHHHHHHHccCCCCCcccCCCCCCCCCCCC
Q 018260 201 DITFNVVGEKFHAHKLVLAARSPVFETEFLDAMEED-NHEIVVTDMEPKVFKALLHFIYKDTLIEDGECSASSSSCVPSV 279 (359)
Q Consensus 201 Dv~i~v~~~~~~~hk~iLa~~S~~F~~~~~~~~~e~-~~~i~l~~~~~~~~~~~L~~iY~~~~~~~~~~~~~~~~~~~~~ 279 (359)
|+++.++|++|++||.+|+++|+||+.||.+++.+. ...+.+++.++..|+.+|+|+|++.+. +
T Consensus 1 dv~i~v~~~~~~~h~~iL~~~s~~f~~~~~~~~~~~~~~~i~l~~~~~~~f~~~l~~ly~~~~~---------------~ 65 (90)
T smart00225 1 DVTLVVGGKKFKAHKAVLAACSPYFKALFSGDFKESKKSEIYLDDVSPEDFRALLEFLYTGKLD---------------L 65 (90)
T ss_pred CeEEEECCEEEehHHHHHhhcCHHHHHHHcCCCccCCCCEEEecCCCHHHHHHHHHeecCceee---------------c
Confidence 688999999999999999999999999999988877 889999999999999999999999883 5
Q ss_pred cHHHHHHHHHHhhccChhHHHHHHH
Q 018260 280 SDTLEAKLLAAAEKYVLPRLRLMCE 304 (359)
Q Consensus 280 ~~~~~~~ll~~A~~~~~~~L~~~ce 304 (359)
...++.+++.+|++|+++.|+..|+
T Consensus 66 ~~~~~~~l~~~a~~~~~~~l~~~c~ 90 (90)
T smart00225 66 PEENVEELLELADYLQIPGLVELCE 90 (90)
T ss_pred CHHHHHHHHHHHHHHCcHHHHhhhC
Confidence 6678999999999999999999885
No 26
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=99.65 E-value=2.4e-16 Score=152.08 Aligned_cols=147 Identities=21% Similarity=0.318 Sum_probs=123.4
Q ss_pred CCCCCeEEEe-CCeEEeeehhhhhccCHHHHHhhccccccC-cceEEEcCCCHHHHHHHHHHHc-cCCCCCcccCCCCCC
Q 018260 197 EESSDITFNV-VGEKFHAHKLVLAARSPVFETEFLDAMEED-NHEIVVTDMEPKVFKALLHFIY-KDTLIEDGECSASSS 273 (359)
Q Consensus 197 ~~~~Dv~i~v-~~~~~~~hk~iLa~~S~~F~~~~~~~~~e~-~~~i~l~~~~~~~~~~~L~~iY-~~~~~~~~~~~~~~~ 273 (359)
+..-|+.|.. +|+.+.|||++|++|+.||..||..-+.|+ .-.+.+-.+..+.+..+|+|+| +++...-.+
T Consensus 708 ~e~~d~~i~~KDGkvl~aHkc~L~aRlEYF~smf~~~w~E~sS~t~~~~p~~~e~m~ivLdylYs~d~~~~~k~------ 781 (1267)
T KOG0783|consen 708 EETMDTVIKLKDGKVLKAHKCFLSARLEYFSSMFQFVWMESSSITVNLSPLTVEHMSIVLDYLYSDDKVELFKD------ 781 (1267)
T ss_pred ccceeEEEEecCCcCcccceeEeeeHHHHHHHHHHHHHhhhccceeecCcchHHHHHHHHHHHHccchHHHHhc------
Confidence 4445777766 678899999999999999999999888888 6555666667999999999999 444432221
Q ss_pred CCCCCCcHHHHHHHHHHhhccChhHHHHHHHHHHhccCChhhHHHHHHHHHhcCChHHHHHHHHHHHHhHHHHhcCCccc
Q 018260 274 SCVPSVSDTLEAKLLAAAEKYVLPRLRLMCESVLCKVISVNSVAHTLALADRHCAMDLKSVCLKFAAENLVGGLGSIENL 353 (359)
Q Consensus 274 ~~~~~~~~~~~~~ll~~A~~~~~~~L~~~ce~~L~~~l~~~n~~~~l~~A~~~~~~~L~~~~~~~i~~~~~~~~~~~~f~ 353 (359)
.-..+.+.++|.+||.|.+.+|+..||..|.+.++..++..+|++|.+|++..|+..|++||+.|+..++.-....
T Consensus 782 ----~~~~dF~~~il~iaDqlli~~Lk~Ice~~ll~kl~lk~~~~llefaamY~ak~L~~~C~dfic~N~~~~Learsi~ 857 (1267)
T KOG0783|consen 782 ----LKESDFMFEILSIADQLLILELKSICEQSLLRKLNLKTLPTLLEFAAMYHAKELYSRCIDFICHNIEFFLEARSIS 857 (1267)
T ss_pred ----cchhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchHHHHHHHHHhhHHHHHHHHHHHHHHhHHHHHHhccHh
Confidence 2345668999999999999999999999999999999999999999999999999999999999998887654433
No 27
>cd03782 MATH_Meprin_Beta Meprin family, Beta subunit, MATH domain; Meprins are multidomain extracellular metalloproteases capable of cleaving growth factors, cytokines, extracellular matrix proteins, and biologically active peptides. They are composed of two related subunits, alpha and beta, which form homo- or hetro-complexes where the basic unit is a disulfide-linked dimer. The beta subunit is a type I membrane protein, which forms homodimers or heterotetramers (alpha2beta2 or alpha3beta). Meprin beta shows preference for acidic residues at the P1 and P1' sites of its substrate. Among its best substrates are growth factors and chemokines such as gastrin and osteopontin. Both alpha and beta subunits contain a catalytic astacin (M12 family) protease domain followed by the adhesion or interaction domains MAM, MATH and AM. The MATH and MAM domains provide symmetrical intersubunit disulfide bonds necessary for the dimerization of meprin subunits. The MATH domain may also be required for f
Probab=99.63 E-value=2.6e-15 Score=121.12 Aligned_cols=133 Identities=21% Similarity=0.341 Sum_probs=98.9
Q ss_pred eeEEEEEEccccccccC-CCCCeeeeceee-ecCeEEEEEEEcCCCCCCCCCCcEEEEEEeccC------Cccce-eeEE
Q 018260 30 NGSHHFTIKGYSLSKGI-GIGKHIASDNFS-VGGYQWAIYFYPDGKNPEDNSTYVSVFIALASE------GTDVR-ALFE 100 (359)
Q Consensus 30 ~~~~~w~I~~fs~~~~~-~~~~~~~S~~f~-~gg~~W~l~~~p~g~~~~~~~~~lsl~L~~~~~------~w~~~-~~~~ 100 (359)
|..++|+|.||+++.+. +.+..++||+|. ..||+.++++|+||.+. ..+|+|||+++.++ +|++. -+++
T Consensus 1 cp~~iWkI~~fs~~~~~~~~~~~i~Sp~FYt~~GYkl~l~~ylnG~g~--~~~~lsl~~~lm~Ge~D~~L~WPf~~~qit 78 (167)
T cd03782 1 CPEHIWHIRNFTQLLATTPPNGKIYSPPFLSSTGYSFQVGLYLNGTDD--YPGNLAIYLHLTSGPNDDQLQWPCPWQQAT 78 (167)
T ss_pred CCcEEEEeCcHHHHHHhcCCCceEECCCCcCccCceeEEEEEecCCCC--CCCEEEEEEEEeccCCCccccCCCcCCeEE
Confidence 46799999999976543 467789999996 46999999999999874 26799999999774 49999 8999
Q ss_pred EEEEecCCCCcceee--e--ccccccccC---Ce-----------------eecccCccccccceeeccccccCCCccCC
Q 018260 101 LTLVDQSGKGKHKVH--S--HFDRSLESG---PY-----------------TLKYRGSMWGYKRFFRRAMLETSDFLKDD 156 (359)
Q Consensus 101 ~~l~~~~~~~~~~~~--~--~~~~~~~~~---~~-----------------~f~~~~~~~G~~~fi~~~~L~~~~~l~~d 156 (359)
+.|+||+.+.....+ . .+.....+. .+ +...++.++||..|++++.|+...|++||
T Consensus 79 ~~LlDQ~~d~~~r~~~~~~~t~~P~~~s~~n~~f~w~rP~kvg~~~~~~~~~~~~r~~~~G~~~Fish~~L~~r~yikdD 158 (167)
T cd03782 79 MMLLDQHPDIRQRMSNQRSVTTDPNMTSTDSDEYFWDDPRKVGSEVTDTDGSTFYRGPGYGTSAFITHLRLRSRDFIKGD 158 (167)
T ss_pred EEEEcCCCchhhccceeeeEEecCCcccccCccceecCCcccCcccccccccccccccccCccceeeHHHHhhcCcccCC
Confidence 999999752222111 1 111111111 11 01123678999999999999888999999
Q ss_pred eEEEEEee
Q 018260 157 CLKINCTV 164 (359)
Q Consensus 157 ~l~i~~~v 164 (359)
.+.|-+++
T Consensus 159 ~ifi~~~~ 166 (167)
T cd03782 159 DVIFLLTM 166 (167)
T ss_pred eEEEEEec
Confidence 99988776
No 28
>smart00061 MATH meprin and TRAF homology.
Probab=99.54 E-value=3e-14 Score=107.41 Aligned_cols=89 Identities=25% Similarity=0.388 Sum_probs=71.6
Q ss_pred EEEEEccccccccCCCCCeeeeceeeecCeEEEEEEEcCCCCCCCCCCcEEEEEEeccC-----CccceeeEEEEEEecC
Q 018260 33 HHFTIKGYSLSKGIGIGKHIASDNFSVGGYQWAIYFYPDGKNPEDNSTYVSVFIALASE-----GTDVRALFELTLVDQS 107 (359)
Q Consensus 33 ~~w~I~~fs~~~~~~~~~~~~S~~f~~gg~~W~l~~~p~g~~~~~~~~~lsl~L~~~~~-----~w~~~~~~~~~l~~~~ 107 (359)
++|+|+||+.+. .++.+.|++|.+||++|+|.+||+ .+|+|+||.|.+. .|++.|+++++|++++
T Consensus 2 ~~~~~~~~~~~~---~~~~~~S~~f~~~g~~W~i~~~p~-------~~~lsl~L~~~~~~~~~~~w~v~a~~~~~l~~~~ 71 (95)
T smart00061 2 LSHTFKNVSRLE---EGESYFSPSEEHFNIPWRLKIYRK-------NGFLSLYLHCEKEECDSRKWSIEAEFTLKLVSQN 71 (95)
T ss_pred ceeEEEchhhcc---cCceEeCChhEEcCceeEEEEEEc-------CCEEEEEEEeCCCcCCCCCeEEEEEEEEEEEeCC
Confidence 579999999763 478999999999999999999999 4689999999653 5899999999999998
Q ss_pred CCCcceeeeccccccccCCeeecccCcccccccee
Q 018260 108 GKGKHKVHSHFDRSLESGPYTLKYRGSMWGYKRFF 142 (359)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~f~~~~~~~G~~~fi 142 (359)
++...+ ...+.|.. ..+|||..|+
T Consensus 72 ~~~~~~----------~~~~~F~~-~~~~G~~~fi 95 (95)
T smart00061 72 GKSLSK----------KDKHVFEK-PSGWGFSKFI 95 (95)
T ss_pred CCEEee----------eeeEEEcC-CCccceeeEC
Confidence 754311 12345654 6789998875
No 29
>KOG1987 consensus Speckle-type POZ protein SPOP and related proteins with TRAF, MATH and BTB/POZ domains [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=99.45 E-value=4.5e-13 Score=122.86 Aligned_cols=225 Identities=28% Similarity=0.362 Sum_probs=169.2
Q ss_pred EEEccccccccCCCCCeeeeceeeecCeEEEEEEEcCCCCCCCCCCcEEEEEEeccC-CccceeeEEEEEEecCCCCc-c
Q 018260 35 FTIKGYSLSKGIGIGKHIASDNFSVGGYQWAIYFYPDGKNPEDNSTYVSVFIALASE-GTDVRALFELTLVDQSGKGK-H 112 (359)
Q Consensus 35 w~I~~fs~~~~~~~~~~~~S~~f~~gg~~W~l~~~p~g~~~~~~~~~lsl~L~~~~~-~w~~~~~~~~~l~~~~~~~~-~ 112 (359)
|.|.+|+... ..++|..|..||..|++.+||.|+ +++.|+..... +|.+.+.+.+.+.|+..... .
T Consensus 8 ~~~~~~~~~~-----l~~ys~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~l~v~n~~~~~~~~ 75 (297)
T KOG1987|consen 8 WVISNFSSVG-----LVIYSNGFVKGGCKWRLSAYPKGN-------YLSLTLSVSDSPGWERYAKLRLTVVNQKSEKYLS 75 (297)
T ss_pred eeeccCcchh-----hhccccceeecCceEEEEEecCCC-------EEEEEEEeccCCCcceeEEEEEEEccCCCcceee
Confidence 8899887665 578899999999999999999975 68888877654 79999999999999976532 1
Q ss_pred eeeeccccccccCCeeecc--cCccccccceeeccccccCCCccCCeEEEEEeeeeeeeeeccCCccccccCCCchHHHH
Q 018260 113 KVHSHFDRSLESGPYTLKY--RGSMWGYKRFFRRAMLETSDFLKDDCLKINCTVGVVVSAIDCSRLHSIQVPESDIGDHF 190 (359)
Q Consensus 113 ~~~~~~~~~~~~~~~~f~~--~~~~~G~~~fi~~~~L~~~~~l~~d~l~i~~~v~i~~~~~~~~~~~~~~~p~~~l~~~l 190 (359)
.... ....+.. -...||+..+++...+.. +
T Consensus 76 ~~~~--------~~~~~~~~~~~~~~g~~~~~~~~~~~~------------~---------------------------- 107 (297)
T KOG1987|consen 76 TVEE--------GFSWFRFNKVLKEWGFGKMLPLTLLID------------C---------------------------- 107 (297)
T ss_pred eeee--------eEEeccccccccccCcccccChHHhhc------------c----------------------------
Confidence 0000 0001111 123444433332222210 0
Q ss_pred HHhhcCCCCCCeEEEeCCeEEeeehhhhhccCHHHHHhhccccccC-cceEEEcCCCHHHHHHHHHHHccCCCCCcccCC
Q 018260 191 GMLLENEESSDITFNVVGEKFHAHKLVLAARSPVFETEFLDAMEED-NHEIVVTDMEPKVFKALLHFIYKDTLIEDGECS 269 (359)
Q Consensus 191 ~~~~~~~~~~Dv~i~v~~~~~~~hk~iLa~~S~~F~~~~~~~~~e~-~~~i~l~~~~~~~~~~~L~~iY~~~~~~~~~~~ 269 (359)
.+..+.+|+.++++++++|+.|+.....+. ...+.+.+.++..++++..|.|...-.
T Consensus 108 ----------------~~g~~~~~~~~~~a~~~V~~~~~~~d~~~~~~~~~~~~d~~~~~~~~~~~F~~~~s~~------ 165 (297)
T KOG1987|consen 108 ----------------SNGFLVAHKLVLVARSEVFEAMGKSDVFKESSKLITLLEEKPEVLEALNGFQVLPSQV------ 165 (297)
T ss_pred ----------------cCcEEEcCceEEEeeecceeeecccccchhccccccccccchhhHhhhceEEEeccch------
Confidence 044599999999999999999998776655 666788899999999999999997642
Q ss_pred CCCCCCCCCCcHHHHH---HHHHHhhccChhHHHHHHHHHHhccCChhhHHHHHHHHHhcCChHHHHHHHHHHHH--hHH
Q 018260 270 ASSSSCVPSVSDTLEA---KLLAAAEKYVLPRLRLMCESVLCKVISVNSVAHTLALADRHCAMDLKSVCLKFAAE--NLV 344 (359)
Q Consensus 270 ~~~~~~~~~~~~~~~~---~ll~~A~~~~~~~L~~~ce~~L~~~l~~~n~~~~l~~A~~~~~~~L~~~~~~~i~~--~~~ 344 (359)
....... .++..|++|+...|+..|+..++..+...++...++.+..+++..+...|..++.. +++
T Consensus 166 ---------~~~~~~~~~~~~~a~~f~~~~~~lk~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ld 236 (297)
T KOG1987|consen 166 ---------SSVERIFEKHPDLAAAFKYKNRHLKLACMPVLLSLIETLNVSQSLQEASNYDLKEAKSALTYVIAAGFKLD 236 (297)
T ss_pred ---------HHHHHhhcCChhhhhccccccHHHHHHHHHHHHHHHHhhhhcccHHHhchhHHHHHHHHHHHHHhccchHh
Confidence 2333343 78889999999999999999999988899999999999999999999999999885 666
Q ss_pred HHhcCC
Q 018260 345 GGLGSI 350 (359)
Q Consensus 345 ~~~~~~ 350 (359)
.+....
T Consensus 237 ~l~~~~ 242 (297)
T KOG1987|consen 237 WLEKKL 242 (297)
T ss_pred HHHHHH
Confidence 665433
No 30
>COG5077 Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=99.22 E-value=1.7e-11 Score=118.15 Aligned_cols=126 Identities=24% Similarity=0.429 Sum_probs=101.1
Q ss_pred eeeeeEEEEEEccccccccCCCCCeeeeceeeecCeEEEEEEEcCCCCCCCCCCcEEEEEEecc--------CCccceee
Q 018260 27 QTINGSHHFTIKGYSLSKGIGIGKHIASDNFSVGGYQWAIYFYPDGKNPEDNSTYVSVFIALAS--------EGTDVRAL 98 (359)
Q Consensus 27 ~~~~~~~~w~I~~fs~~~~~~~~~~~~S~~f~~gg~~W~l~~~p~g~~~~~~~~~lsl~L~~~~--------~~w~~~~~ 98 (359)
+...-++.|.|.+|+.+.. .+.||+|.+||+.|+|.++|+|+.. .+ ++|||.... ..|.|.|+
T Consensus 35 e~~~~sftW~vk~wsel~~-----k~~Sp~F~vg~~twki~lfPqG~nq---~~-~sVyLe~~pqe~e~~~gk~~~ccaq 105 (1089)
T COG5077 35 ELLEMSFTWKVKRWSELAK-----KVESPPFSVGGHTWKIILFPQGNNQ---CN-VSVYLEYEPQELEETGGKYYDCCAQ 105 (1089)
T ss_pred HHhhcccceecCChhhhhh-----hccCCcccccCeeEEEEEecccCCc---cc-cEEEEEeccchhhhhcCcchhhhhh
Confidence 3467899999999998873 5889999999999999999999873 33 999998754 23999999
Q ss_pred EEEEEEecCCCCcceeeeccccccccCCeeecccCccccccceeeccccc-----cCCCccCCeEEEEEeeeeeee
Q 018260 99 FELTLVDQSGKGKHKVHSHFDRSLESGPYTLKYRGSMWGYKRFFRRAMLE-----TSDFLKDDCLKINCTVGVVVS 169 (359)
Q Consensus 99 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~G~~~fi~~~~L~-----~~~~l~~d~l~i~~~v~i~~~ 169 (359)
|.|.|.+...... ...++..++|.....+|||..|+.+..|. ...|+.+|.+.|.+.|.|.+.
T Consensus 106 Faf~Is~p~~pti--------~~iN~sHhrFs~~~tDwGFt~f~dL~kl~~psp~~Ppfleeg~l~ItvyVRvlkd 173 (1089)
T COG5077 106 FAFDISNPKYPTI--------EYINKSHHRFSMESTDWGFTNFIDLNKLIEPSPGRPPFLEEGTLVITVYVRVLKD 173 (1089)
T ss_pred eeeecCCCCCCch--------hhhhcccccccccccccchhhhhhhhhhcCCCCCCCCcccCCeEEEEEEEEEEeC
Confidence 9999988754221 12233457888888999999999998883 235899999999999998863
No 31
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=98.80 E-value=9.2e-09 Score=100.58 Aligned_cols=82 Identities=39% Similarity=0.622 Sum_probs=65.9
Q ss_pred cCCCchHHHHHHhhcCC----CCCCeEEEeCCeEEeeehhhhhccCHHHHHhhccccccC-------------cceEEEc
Q 018260 181 VPESDIGDHFGMLLENE----ESSDITFNVVGEKFHAHKLVLAARSPVFETEFLDAMEED-------------NHEIVVT 243 (359)
Q Consensus 181 ~p~~~l~~~l~~~~~~~----~~~Dv~i~v~~~~~~~hk~iLa~~S~~F~~~~~~~~~e~-------------~~~i~l~ 243 (359)
++.+.+-..+..++... .+.||+|.||++.|+|||+||++||++|+.+|....+.+ ...|.++
T Consensus 536 ~~ss~fe~sf~kLl~e~~~~ds~hDVtf~vg~~~F~aHKfIl~~rs~flrkL~l~~~~~s~~~dIY~~~~~~~~~~~~ve 615 (1267)
T KOG0783|consen 536 AASSNFEGSFPKLLSEENYKDSFHDVTFYVGTSMFHAHKFILCARSSFLRKLLLQKKKSSVSNDIYIEEITQSHSTIRVE 615 (1267)
T ss_pred cccccchhhhHHHhhccccccccceEEEEecCeecccceEEEEeccHHHHHHHHhhccccccceeeeecccccCceeeec
Confidence 34566677777777543 467999999999999999999999999999996543332 2345578
Q ss_pred CCCHHHHHHHHHHHccCCC
Q 018260 244 DMEPKVFKALLHFIYKDTL 262 (359)
Q Consensus 244 ~~~~~~~~~~L~~iY~~~~ 262 (359)
++.+..|+.+|+||||+..
T Consensus 616 ~i~p~mfe~lL~~iYtdt~ 634 (1267)
T KOG0783|consen 616 DIPPLMFEILLHYIYTDTL 634 (1267)
T ss_pred cCCHHHHHHHHHHHhcccc
Confidence 9999999999999999964
No 32
>KOG0511 consensus Ankyrin repeat protein [General function prediction only]
Probab=98.58 E-value=1.9e-07 Score=84.04 Aligned_cols=130 Identities=19% Similarity=0.226 Sum_probs=108.3
Q ss_pred eEEeeehhhhhccCHHHHHhhccccccC-----cceEEEcCCCHHHHHHHHHHHccCCCCCcccCCCCCCCCCCCCcHHH
Q 018260 209 EKFHAHKLVLAARSPVFETEFLDAMEED-----NHEIVVTDMEPKVFKALLHFIYKDTLIEDGECSASSSSCVPSVSDTL 283 (359)
Q Consensus 209 ~~~~~hk~iLa~~S~~F~~~~~~~~~e~-----~~~i~l~~~~~~~~~~~L~~iY~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (359)
.+++||+.++. |..||+.||.|++.|+ .....++.....+++..|+|+|+++. .+..+.
T Consensus 301 ~RyP~hla~i~-R~eyfk~mf~g~f~e~s~n~~~p~lslp~~~~~vveI~lr~lY~d~t---------------di~~~~ 364 (516)
T KOG0511|consen 301 DRYPAHLARIL-RVEYFKSMFVGDFIESSVNDTRPGLSLPSLADVVVEIDLRNLYCDQT---------------DIIFDV 364 (516)
T ss_pred ccccHHHHHHH-HHHHHHHHhccchhhhcCCccccccccchHHHHHHHHHHHHhhcccc---------------cchHHH
Confidence 46999999986 7889999999999995 23455677888999999999999987 477888
Q ss_pred HHHHHHHhhccChh--H-HHHHHHHHHhcc---CChhhHHHHHHHHHhcCChHHHHHHHHHHHHhHHHHhcCCcccC
Q 018260 284 EAKLLAAAEKYVLP--R-LRLMCESVLCKV---ISVNSVAHTLALADRHCAMDLKSVCLKFAAENLVGGLGSIENLG 354 (359)
Q Consensus 284 ~~~ll~~A~~~~~~--~-L~~~ce~~L~~~---l~~~n~~~~l~~A~~~~~~~L~~~~~~~i~~~~~~~~~~~~f~~ 354 (359)
+.+++..|+++.+. + |+..+.-.|++. ++.-++..++..+.......|...+..|+..|+..+...+++.+
T Consensus 365 A~dvll~ad~lal~~dr~Lkt~as~~itq~~e~id~y~V~dIl~~~wd~~~~rlEqfa~~~~a~hl~~l~~dPe~~~ 441 (516)
T KOG0511|consen 365 ASDVLLFADKLALADDRLLKTAASAEITQWLELIDMYGVLDILEYCWDLVACRLEQFAETHEARHLLLLLPDPEGDS 441 (516)
T ss_pred HhhHHHHhhHhhhhhhhhhhhhhhHHHHHHHHHHHhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhcCCchhhH
Confidence 99999999999765 2 566665556553 34557999999999999999999999999999999999998764
No 33
>KOG2716 consensus Polymerase delta-interacting protein PDIP1 and related proteins, contain BTB/POZ domain [Inorganic ion transport and metabolism]
Probab=98.45 E-value=1.4e-06 Score=74.99 Aligned_cols=95 Identities=25% Similarity=0.382 Sum_probs=81.2
Q ss_pred eEEEeCCeEEeeehhhhhccCHHHHHhhccccccC---cceEEEcCCCHHHHHHHHHHHccCCCCCcccCCCCCCCCCCC
Q 018260 202 ITFNVVGEKFHAHKLVLAARSPVFETEFLDAMEED---NHEIVVTDMEPKVFKALLHFIYKDTLIEDGECSASSSSCVPS 278 (359)
Q Consensus 202 v~i~v~~~~~~~hk~iLa~~S~~F~~~~~~~~~e~---~~~i~l~~~~~~~~~~~L~~iY~~~~~~~~~~~~~~~~~~~~ 278 (359)
|.+.|||..|..++.-|.....+|++|+..++.-. .+.|-|+ =+|..|..+|+||..|.++.+
T Consensus 7 vkLnvGG~~F~Tsk~TLtk~dg~fk~m~e~~i~~~~d~s~~IFID-RSpKHF~~ILNfmRdGdv~LP------------- 72 (230)
T KOG2716|consen 7 VKLNVGGTIFKTSKSTLTKFDGFFKTMLETDIPVEKDESGCIFID-RSPKHFDTILNFMRDGDVDLP------------- 72 (230)
T ss_pred EEEecCCeEEEeehhhhhhhhhHHHHHhhcCCccccCCcCcEEec-CChhHHHHHHHhhhcccccCc-------------
Confidence 56889999999999999999999999999886422 5566664 599999999999998887632
Q ss_pred CcHHHHHHHHHHhhccChhHHHHHHHHHHhcc
Q 018260 279 VSDTLEAKLLAAAEKYVLPRLRLMCESVLCKV 310 (359)
Q Consensus 279 ~~~~~~~~ll~~A~~~~~~~L~~~ce~~L~~~ 310 (359)
.+...+.+|++=|.+|.++.|.++|+..|...
T Consensus 73 e~~kel~El~~EA~fYlL~~Lv~~C~~~i~~~ 104 (230)
T KOG2716|consen 73 ESEKELKELLREAEFYLLDGLVELCQSAIARL 104 (230)
T ss_pred cchHHHHHHHHHHHHhhHHHHHHHHHHHhhhc
Confidence 46788999999999999999999999987653
No 34
>KOG2838 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=98.45 E-value=3e-07 Score=79.35 Aligned_cols=137 Identities=23% Similarity=0.358 Sum_probs=90.2
Q ss_pred CchHHHHHHhhcCC-CCCCeEEEe-CC--------------eEEeeehhhhhccCHHHHHhhccccccC----------c
Q 018260 184 SDIGDHFGMLLENE-ESSDITFNV-VG--------------EKFHAHKLVLAARSPVFETEFLDAMEED----------N 237 (359)
Q Consensus 184 ~~l~~~l~~~~~~~-~~~Dv~i~v-~~--------------~~~~~hk~iLa~~S~~F~~~~~~~~~e~----------~ 237 (359)
..+-.++..+++.. .+.|+.+.+ +| .++.||+.|.++||++|+.++.....++ .
T Consensus 220 kkLd~Dmkglfd~~c~~d~li~~ssD~elveafggeeNc~deeikahkai~aaRS~ffRnLL~RkiregeE~sdrtlr~P 299 (401)
T KOG2838|consen 220 KKLDEDMKGLFDQDCKHDDLIIESSDGELVEAFGGEENCEDEEIKAHKAIAAARSKFFRNLLLRKIREGEEGSDRTLRRP 299 (401)
T ss_pred hhhhHHHHHHHHhhcccCcEEEEeccchhhhhcCCcccchhHHHHHHHHHHHhhhHHHHHHHHHHhhcccccccccccCC
Confidence 34456666666544 345555554 23 4799999999999999999997554443 2
Q ss_pred ceEEEcC-CCHHHH-HHHHHHHccCCCCCcccCCCCCCC------------CC-CCCcHHHHHHHHHHhhccChhHHHHH
Q 018260 238 HEIVVTD-MEPKVF-KALLHFIYKDTLIEDGECSASSSS------------CV-PSVSDTLEAKLLAAAEKYVLPRLRLM 302 (359)
Q Consensus 238 ~~i~l~~-~~~~~~-~~~L~~iY~~~~~~~~~~~~~~~~------------~~-~~~~~~~~~~ll~~A~~~~~~~L~~~ 302 (359)
..|.+++ +-|..| -.+|+++||+.++..-...-..+. +. +......+.+|+.+|-+|++.-|.+.
T Consensus 300 kRIifdE~I~PkafA~i~lhclYTD~lDlSl~hkce~SigSLSeakAitnaGkpn~~qaaeAleL~~IAlFfEfemLaQa 379 (401)
T KOG2838|consen 300 KRIIFDELIFPKAFAPIFLHCLYTDRLDLSLAHKCEDSIGSLSEAKAITNAGKPNDLQAAEALELIEIALFFEFEMLAQA 379 (401)
T ss_pred ceeechhhhcchhhhhhhhhhheecccchhhcccCCcccccHHHHHHHHcCCCCchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455654 334444 467899999988533211000110 11 23344567889999999999999999
Q ss_pred HHHHHhccCChhhHHHHH
Q 018260 303 CESVLCKVISVNSVAHTL 320 (359)
Q Consensus 303 ce~~L~~~l~~~n~~~~l 320 (359)
|+..+......++....|
T Consensus 380 ~e~Vir~acaadlsn~cL 397 (401)
T KOG2838|consen 380 CEDVIRKACAADLSNGCL 397 (401)
T ss_pred HHHHHHhhhhhhcccccc
Confidence 999998877777655544
No 35
>KOG2838 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=98.37 E-value=3.7e-07 Score=78.78 Aligned_cols=83 Identities=22% Similarity=0.264 Sum_probs=69.5
Q ss_pred cCCCchHHHHHHhhcCCCCCCeEEEeCCeEEeeehhhhhccCHHHHHhhccccccC---cceEEEcCCCHHHHHHHHHHH
Q 018260 181 VPESDIGDHFGMLLENEESSDITFNVVGEKFHAHKLVLAARSPVFETEFLDAMEED---NHEIVVTDMEPKVFKALLHFI 257 (359)
Q Consensus 181 ~p~~~l~~~l~~~~~~~~~~Dv~i~v~~~~~~~hk~iLa~~S~~F~~~~~~~~~e~---~~~i~l~~~~~~~~~~~L~~i 257 (359)
.|..++.+++.+.++.....|+-|+.....|+|||++|++|||+|+.+....-... .-.|..-+++...|.++|+|+
T Consensus 112 ~ea~sf~kD~ad~ye~k~c~dldiiFkeTcfpahRA~laaRCpffK~l~nsd~e~~ae~i~dik~ag~dm~~feafLh~l 191 (401)
T KOG2838|consen 112 KEANSFLKDFADGYERKVCGDLDIIFKETCFPAHRAFLAARCPFFKILANSDEEPEAEDICDIKFAGFDMDAFEAFLHSL 191 (401)
T ss_pred cchhHHHHHHhhhhheeeeccceeeeeeccchHHHHHHHhhCcchhhhccCCCCcchhhhhhhhhhccChHHHHHHHHHH
Confidence 34568889999998888889999999999999999999999999999886542222 334666689999999999999
Q ss_pred ccCCCC
Q 018260 258 YKDTLI 263 (359)
Q Consensus 258 Y~~~~~ 263 (359)
|+|+.-
T Consensus 192 ~tgEfg 197 (401)
T KOG2838|consen 192 ITGEFG 197 (401)
T ss_pred Hhcccc
Confidence 999874
No 36
>PF02214 BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. The Kv family can be divided into several subfamilies on the basis of sequence similarity and function. Four of these subfamilies, Kv1 (Shaker), Kv2 (Shab), Kv3 (Shaw) and Kv4 (Shal), consist of pore-forming alpha subunits that associate with different types of beta subunit. Each alpha subunit comprises six hydrophobic TM domains with a P-domain between the fifth and sixth, which partially resides in the membrane. The fourth TM domain has positively charged residues at every third residue and acts as a voltage sensor, which triggers the conformational change that opens the channel pore in response to a displacement in membrane potential []. More recently, 4 new electrically-silent alpha subunits have been cloned: Kv5 (KCNF), Kv6 (KCNG), Kv8 and Kv9 (KCNS). These subunits do not themselves possess any functional activity, but appear to form heteromeric channels with Kv2 subunits, and thus modulate Shab channel activity []. When highly expressed, they inhibit channel activity, but at lower levels show more specific modulatory actions. The N-terminal, cytoplasmic tetramerization domain (T1) of voltage-gated potassium channels encodes molecular determinants for subfamily-specific assembly of alpha-subunits into functional tetrameric channels []. This domain is found in a subset of a larger group of proteins that contain the BTB/POZ domain.; GO: 0005249 voltage-gated potassium channel activity, 0006813 potassium ion transport, 0008076 voltage-gated potassium channel complex, 0016020 membrane; PDB: 1NN7_A 3KVT_A 1EXB_E 1QDV_A 1DSX_E 1QDW_F 3LUT_B 3LNM_B 2A79_B 3DRY_C ....
Probab=98.04 E-value=7.9e-06 Score=61.23 Aligned_cols=87 Identities=24% Similarity=0.380 Sum_probs=65.5
Q ss_pred eEEEeCCeEEeeehhhhh-ccCHHHHHhhccc---cccC-cceEEEcCCCHHHHHHHHHHHcc-CCCCCcccCCCCCCCC
Q 018260 202 ITFNVVGEKFHAHKLVLA-ARSPVFETEFLDA---MEED-NHEIVVTDMEPKVFKALLHFIYK-DTLIEDGECSASSSSC 275 (359)
Q Consensus 202 v~i~v~~~~~~~hk~iLa-~~S~~F~~~~~~~---~~e~-~~~i~l~~~~~~~~~~~L~~iY~-~~~~~~~~~~~~~~~~ 275 (359)
|.|.|||+.|.+-+..|. ....+|..|+.++ .... ..++-| |-++..|+.+|+|+.+ +.++.+
T Consensus 1 V~lNVGG~~f~~~~~tL~~~~~s~l~~~~~~~~~~~~~~~~~~~fi-DRdp~~F~~IL~ylr~~~~l~~~---------- 69 (94)
T PF02214_consen 1 VRLNVGGTIFETSRSTLTRYPDSLLARLFSGERSDDYDDDDGEYFI-DRDPELFEYILNYLRTGGKLPIP---------- 69 (94)
T ss_dssp EEEEETTEEEEEEHHHHHTSTTSTTTSHHHTGHGGGEETTTTEEEE-SS-HHHHHHHHHHHHHTSSB-------------
T ss_pred CEEEECCEEEEEcHHHHhhCCCChhhhHHhhccccccCCccceEEe-ccChhhhhHHHHHHhhcCccCCC----------
Confidence 678999999999999999 4467999999864 2223 566766 5799999999999999 566421
Q ss_pred CCCCcHHHHHHHHHHhhccChhHH-HHHH
Q 018260 276 VPSVSDTLEAKLLAAAEKYVLPRL-RLMC 303 (359)
Q Consensus 276 ~~~~~~~~~~~ll~~A~~~~~~~L-~~~c 303 (359)
.......++.-|++|+++.| ++.|
T Consensus 70 ----~~~~~~~l~~Ea~fy~l~~l~i~~c 94 (94)
T PF02214_consen 70 ----DEICLEELLEEAEFYGLDELFIEDC 94 (94)
T ss_dssp ----TTS-HHHHHHHHHHHT-HHHHBHHC
T ss_pred ----CchhHHHHHHHHHHcCCCccccCCC
Confidence 23567899999999999998 6665
No 37
>KOG3473 consensus RNA polymerase II transcription elongation factor Elongin/SIII, subunit elongin C [Transcription]
Probab=97.43 E-value=0.0012 Score=47.95 Aligned_cols=76 Identities=14% Similarity=0.220 Sum_probs=59.5
Q ss_pred CCeEEeeehhhhhccCHHHHHhhcccccc--C-cceEEEcCCCHHHHHHHHHHH-----ccCC---CCCcccCCCCCCCC
Q 018260 207 VGEKFHAHKLVLAARSPVFETEFLDAMEE--D-NHEIVVTDMEPKVFKALLHFI-----YKDT---LIEDGECSASSSSC 275 (359)
Q Consensus 207 ~~~~~~~hk~iLa~~S~~F~~~~~~~~~e--~-~~~i~l~~~~~~~~~~~L~~i-----Y~~~---~~~~~~~~~~~~~~ 275 (359)
+|.+|-..|. +|.-|+-.++||.|+... + .+++.++|++...++.+.+|+ |++. +|..
T Consensus 25 Ddhefiikre-~AmtSgTiraml~gpg~~se~~~n~v~f~di~shiLeKvc~Yl~Yk~rY~~~s~eiPeF---------- 93 (112)
T KOG3473|consen 25 DDHEFIIKRE-HAMTSGTIRAMLSGPGVFSEAEKNEVYFRDIPSHILEKVCEYLAYKVRYTNSSTEIPEF---------- 93 (112)
T ss_pred CCcEEEEeeh-hhhhhhHHHHHHcCCccccccccceEEeccchHHHHHHHHHHhhheeeeccccccCCCC----------
Confidence 4566766664 567899999999987554 4 889999999999999999998 3433 2222
Q ss_pred CCCCcHHHHHHHHHHhhccC
Q 018260 276 VPSVSDTLEAKLLAAAEKYV 295 (359)
Q Consensus 276 ~~~~~~~~~~~ll~~A~~~~ 295 (359)
.+..+.+.+||.+|+.++
T Consensus 94 --~IppemaleLL~aAn~Le 111 (112)
T KOG3473|consen 94 --DIPPEMALELLMAANYLE 111 (112)
T ss_pred --CCCHHHHHHHHHHhhhhc
Confidence 478899999999999875
No 38
>PF11822 DUF3342: Domain of unknown function (DUF3342); InterPro: IPR021777 This family of proteins are functionally uncharacterised. This family is found in bacteria. This presumed domain is typically between 170 to 303 amino acids in length. The N-terminal half of this family is a BTB-like domain.
Probab=97.41 E-value=0.00039 Score=62.64 Aligned_cols=110 Identities=15% Similarity=0.199 Sum_probs=86.7
Q ss_pred eEEeeehhhhhccCHHHHHhhccccccC--cceEEEc-CCCHHHHHHHHHHHccCCCCCcccCCCCCCCCCCCCcHHHHH
Q 018260 209 EKFHAHKLVLAARSPVFETEFLDAMEED--NHEIVVT-DMEPKVFKALLHFIYKDTLIEDGECSASSSSCVPSVSDTLEA 285 (359)
Q Consensus 209 ~~~~~hk~iLa~~S~~F~~~~~~~~~e~--~~~i~l~-~~~~~~~~~~L~~iY~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (359)
+.|.|.+.+|...=.||+..+.....++ ..+|+|. ..+..+|+-+++|+..... .++..|+.
T Consensus 14 rdF~C~~~lL~~~M~YF~~~l~~~~~~~~~~~~idisVhCDv~iF~WLm~yv~~~~p---------------~l~~~Nvv 78 (317)
T PF11822_consen 14 RDFTCPRDLLVSEMRYFAEYLSRYINDSQRWEEIDISVHCDVHIFEWLMRYVKGEPP---------------SLTPSNVV 78 (317)
T ss_pred eeeeccHHHHHHhhHHHHHHHhhcccccCcCCCcceEEecChhHHHHHHHHhhcCCC---------------cCCcCcEE
Confidence 6899999999999999999996633333 5567776 5788999999999999443 57889999
Q ss_pred HHHHHhhccChhHHHHHHHHHHhccC----------ChhhHHHHHHHHHhcCChHHHH
Q 018260 286 KLLAAAEKYVLPRLRLMCESVLCKVI----------SVNSVAHTLALADRHCAMDLKS 333 (359)
Q Consensus 286 ~ll~~A~~~~~~~L~~~ce~~L~~~l----------~~~n~~~~l~~A~~~~~~~L~~ 333 (359)
.||.-+++++|+.|.+.|-.|+-.++ +.-|---+..+|.++...+|..
T Consensus 79 sIliSS~FL~M~~Lve~cl~y~~~~~~~Iv~~~~nl~Cl~~~Ll~RLa~~~t~~el~~ 136 (317)
T PF11822_consen 79 SILISSEFLQMESLVEECLQYCHDHMSEIVASPCNLNCLNDNLLTRLADMFTHEELEA 136 (317)
T ss_pred EeEehhhhhccHHHHHHHHHHHHHhHHHHHcCCCCcccCCHHHHHHHHHhcCcccHhH
Confidence 99999999999999999999985432 2223445566777777766665
No 39
>PF07707 BACK: BTB And C-terminal Kelch; InterPro: IPR011705 This domain is found associated with (IPR000210 from INTERPRO) and (IPR006652 from INTERPRO). BTB (broad-complex, tramtrack and bric a brac) is a Kelch related domain, also known as the POZ domain []. BTB proteins are divided into subgroups depending on what domain lies at the C terminus. Despite the divergence in sequences, the BTB fold is highly conserved. BTB-Kelch proteins have Kelch repeats that form a beta-propeller that can interact with actin filaments []. BTB and C-terminal Kelch (BACK) together constitute a novel conserved domain, which is thought to have a possible role in substrate orientation in Cullin3-based E3 ligase complexes. Four domains, namely the BTB domain, a kelch domain, a BACK domain, and an intervening region (IVR) make up the aryl hydrocarbon receptor (AHR); a ligand-activated transcription factor []. This entry represents the domain associated with BTB and Kelch.; PDB: 3HVE_A 2EQX_A 3I3N_A 4AP2_A 4APF_A.
Probab=97.14 E-value=0.00049 Score=52.18 Aligned_cols=43 Identities=26% Similarity=0.268 Sum_probs=38.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHhHHHHhcCCcccCCccc
Q 018260 316 VAHTLALADRHCAMDLKSVCLKFAAENLVGGLGSIENLGIKAA 358 (359)
Q Consensus 316 ~~~~l~~A~~~~~~~L~~~~~~~i~~~~~~~~~~~~f~~l~~~ 358 (359)
|+.++.+|..|++..|.+.|.+||..||..+..+++|.+||.+
T Consensus 1 C~~i~~~A~~~~~~~L~~~~~~~i~~nf~~v~~~~~f~~L~~~ 43 (103)
T PF07707_consen 1 CLSIYRLAEKYGLEELAEACLRFIAKNFNEVSKSDEFLELPFD 43 (103)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHTHHHHTTSHHHHCS-HH
T ss_pred ChhHHHHHHHcChHHHHHHHHHHHHHHHHHHccchhhhcCCHH
Confidence 5789999999999999999999999999999999999999864
No 40
>KOG1665 consensus AFH1-interacting protein FIP2, contains BTB/POZ domain and pentapeptide repeats [General function prediction only]
Probab=97.08 E-value=0.0016 Score=55.05 Aligned_cols=92 Identities=24% Similarity=0.358 Sum_probs=74.9
Q ss_pred CeEEEeCCeEEeeehhhhhccCH--HHHHhhccc--cccC-cceEEEcCCCHHHHHHHHHHHccCCCCCcccCCCCCCCC
Q 018260 201 DITFNVVGEKFHAHKLVLAARSP--VFETEFLDA--MEED-NHEIVVTDMEPKVFKALLHFIYKDTLIEDGECSASSSSC 275 (359)
Q Consensus 201 Dv~i~v~~~~~~~hk~iLa~~S~--~F~~~~~~~--~~e~-~~~i~l~~~~~~~~~~~L~~iY~~~~~~~~~~~~~~~~~ 275 (359)
=|.+.++|+.|-..+.-|..|-| -..+||.+. +.+. ..-..+-|-++.-|+.+|.|+..|.++
T Consensus 10 ~vrlnigGk~f~TTidTlv~rEPDSMLa~MF~~~g~~~~~d~kGa~lIDRsp~yFepIlNyLr~Gq~~------------ 77 (302)
T KOG1665|consen 10 MVRLNIGGKKFCTTIDTLVIREPDSMLAAMFSGRGAMCQEDKKGAVLIDRSPKYFEPILNYLRDGQIP------------ 77 (302)
T ss_pred hheeecCCeEEEEeehhhcccCchHHHHHHHccCCCccccccCceEEEccCchhhHHHHHHHhcCcee------------
Confidence 46788999999988888877754 678888654 3333 445566677999999999999999987
Q ss_pred CCCCcHHHHHHHHHHhhccChhHHHHHHHHH
Q 018260 276 VPSVSDTLEAKLLAAAEKYVLPRLRLMCESV 306 (359)
Q Consensus 276 ~~~~~~~~~~~ll~~A~~~~~~~L~~~ce~~ 306 (359)
..+.-++.++|+.|++|++-.|++..++.
T Consensus 78 --~~s~i~~lgvLeeArff~i~sL~~hle~~ 106 (302)
T KOG1665|consen 78 --SLSDIDCLGVLEEARFFQILSLKDHLEDS 106 (302)
T ss_pred --ecCCccHHHHHHHhhHHhhHhHHhHHhhh
Confidence 45667899999999999999999998883
No 41
>smart00512 Skp1 Found in Skp1 protein family. Family of Skp1 (kinetochore protein required for cell cycle progression) and elongin C (subunit of RNA polymerase II transcription factor SIII) homologues.
Probab=96.95 E-value=0.0043 Score=47.29 Aligned_cols=91 Identities=15% Similarity=0.161 Sum_probs=59.9
Q ss_pred eEEEe-CCeEEeeehhhhhccCHHHHHhhccccccC--cceEEEcCCCHHHHHHHHHHHccCC-CCCccc----CCCC--
Q 018260 202 ITFNV-VGEKFHAHKLVLAARSPVFETEFLDAMEED--NHEIVVTDMEPKVFKALLHFIYKDT-LIEDGE----CSAS-- 271 (359)
Q Consensus 202 v~i~v-~~~~~~~hk~iLa~~S~~F~~~~~~~~~e~--~~~i~l~~~~~~~~~~~L~~iY~~~-~~~~~~----~~~~-- 271 (359)
+++.. +|.+|.+.+.+. ..|..++.|+.+...+. ...|++++++..+++.+++|++.-. .+.... ....
T Consensus 4 v~L~S~Dg~~f~v~~~~a-~~S~~i~~~l~~~~~~~~~~~~Ipl~~v~~~~L~~Vi~yc~~h~~~~~~~~~~~~~~~wD~ 82 (104)
T smart00512 4 IKLISSDGEVFEVEREVA-RQSKTIKAMIEDLGVDDENNNPIPLPNVTSKILSKVIEYCEHHVDDPPSVADKDDIPTWDA 82 (104)
T ss_pred EEEEeCCCCEEEecHHHH-HHHHHHHHHHHccCcccCCCCCccCCCcCHHHHHHHHHHHHHcccCCCCccccccccHHHH
Confidence 44443 688999999876 58999999997543322 3589999999999999999996432 211110 0000
Q ss_pred CCCCCCCCcHHHHHHHHHHhhccCh
Q 018260 272 SSSCVPSVSDTLEAKLLAAAEKYVL 296 (359)
Q Consensus 272 ~~~~~~~~~~~~~~~ll~~A~~~~~ 296 (359)
... .++.+.+.+|+.||+++++
T Consensus 83 ~F~---~~d~~~l~dLl~AAnyL~I 104 (104)
T smart00512 83 EFL---KIDQETLFELILAANYLDI 104 (104)
T ss_pred HHH---cCCHHHHHHHHHHHHhhCC
Confidence 000 1445577788888877764
No 42
>KOG2714 consensus SETA binding protein SB1 and related proteins, contain BTB/POZ domain [General function prediction only]
Probab=96.72 E-value=0.0052 Score=57.12 Aligned_cols=91 Identities=21% Similarity=0.315 Sum_probs=68.5
Q ss_pred CeEEEeCCeEEeeehhhhhccC--HHHHHhhccccccC--cceEEEcCCCHHHHHHHHHHHccCCCCCcccCCCCCCCCC
Q 018260 201 DITFNVVGEKFHAHKLVLAARS--PVFETEFLDAMEED--NHEIVVTDMEPKVFKALLHFIYKDTLIEDGECSASSSSCV 276 (359)
Q Consensus 201 Dv~i~v~~~~~~~hk~iLa~~S--~~F~~~~~~~~~e~--~~~i~l~~~~~~~~~~~L~~iY~~~~~~~~~~~~~~~~~~ 276 (359)
-|.|.|+|+.|.-.+.-|+... .+|.+++.+.+.-. ..-..+-|-+|+.|..+|+||.|+.++.
T Consensus 12 ~V~lNVGGriF~Ts~qTL~~~~~DSffsaL~s~~~~s~~~~~~~iFIDRDPdlFaviLn~LRTg~L~~------------ 79 (465)
T KOG2714|consen 12 RVKLNVGGRIFETSAQTLTWIPRDSFFSALLSGRINSLKDESGAIFIDRDPDLFAVILNLLRTGDLDA------------ 79 (465)
T ss_pred eEEEecCceEEecchhhhhcCCcchHHHHHhcCccccccCCCCceEecCCchHHHHHHHHHhcCCCCC------------
Confidence 4778999999999999888766 69999998776554 2222334669999999999999999964
Q ss_pred CCCcHHHH-HHHHHHhhccChhHHHH---HHHHH
Q 018260 277 PSVSDTLE-AKLLAAAEKYVLPRLRL---MCESV 306 (359)
Q Consensus 277 ~~~~~~~~-~~ll~~A~~~~~~~L~~---~ce~~ 306 (359)
..... ..|+.-|.+|++..|.. +|+.-
T Consensus 80 ---~g~~~~~llhdEA~fYGl~~llrrl~~~~~~ 110 (465)
T KOG2714|consen 80 ---SGVFPERLLHDEAMFYGLTPLLRRLTLCEEL 110 (465)
T ss_pred ---ccCchhhhhhhhhhhcCcHHHHHHhhcCccc
Confidence 22223 34445899999998876 55554
No 43
>smart00875 BACK BTB And C-terminal Kelch. The BACK domain is found juxtaposed to the BTB domain; they are separated by as little as two residues.
Probab=96.61 E-value=0.0023 Score=48.03 Aligned_cols=42 Identities=19% Similarity=0.115 Sum_probs=38.7
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHhHHHHhcCCcccCCccc
Q 018260 317 AHTLALADRHCAMDLKSVCLKFAAENLVGGLGSIENLGIKAA 358 (359)
Q Consensus 317 ~~~l~~A~~~~~~~L~~~~~~~i~~~~~~~~~~~~f~~l~~~ 358 (359)
+.++.+|..|++..|.+.|.+||.+||..+.++++|.+||.+
T Consensus 2 ~~i~~~a~~~~~~~L~~~~~~~i~~nf~~~~~~~~f~~L~~~ 43 (101)
T smart00875 2 LGIRRFAELYGLEELLEKALRFILKNFLEVAQSEEFLELSLE 43 (101)
T ss_pred HhHHHHHHHhChHHHHHHHHHHHHHHHHHHhcCcHHhcCCHH
Confidence 567889999999999999999999999999999999999853
No 44
>KOG1863 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=96.59 E-value=0.0032 Score=67.36 Aligned_cols=121 Identities=13% Similarity=0.120 Sum_probs=89.2
Q ss_pred eEEEEEEccccccccCCCCCeeeeceeeecCeEEEEEEEcCCCCCCCCCCcEEEEEEeccC----CccceeeEEEEEEec
Q 018260 31 GSHHFTIKGYSLSKGIGIGKHIASDNFSVGGYQWAIYFYPDGKNPEDNSTYVSVFIALASE----GTDVRALFELTLVDQ 106 (359)
Q Consensus 31 ~~~~w~I~~fs~~~~~~~~~~~~S~~f~~gg~~W~l~~~p~g~~~~~~~~~lsl~L~~~~~----~w~~~~~~~~~l~~~ 106 (359)
....|.+.+..... . ...|+.|..|+.+|++.+.|+|+. ...++.|+.|... .|.+.+++.+.+.|
T Consensus 27 ~~~~~~~~~~~~~~----~-~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~s~~~~~~~~v~~- 96 (1093)
T KOG1863|consen 27 QSTTIDGIDDKSLL----Y-RALSSNFGAGATKWKILIAPKVNS----LQSTRKKLEVMPSQSLKSWSCGAQAVLRVKN- 96 (1093)
T ss_pred ccccccCcCcchhh----h-HhcCccccccccceeeeeccccCc----ccceeEEeeeccCCCCcceEecchhhhcccc-
Confidence 33346555544333 2 567899999999999999999874 4569999999652 28999999999999
Q ss_pred CCCCcceeeeccccccccCCeeecccCccccccceeeccccc--cCCCccCCeEEEEEeeeeee
Q 018260 107 SGKGKHKVHSHFDRSLESGPYTLKYRGSMWGYKRFFRRAMLE--TSDFLKDDCLKINCTVGVVV 168 (359)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~G~~~fi~~~~L~--~~~~l~~d~l~i~~~v~i~~ 168 (359)
..+..... .....+.|.....+||+.+|+.|.++. ..+|+.+|.+.+++.|.+..
T Consensus 97 ~~~~~~~~-------~~~~~h~~~~~~~dwg~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~ 153 (1093)
T KOG1863|consen 97 TIDNLPDP-------EKAIHHVFTADERDWGFSCFSTSSDIRKPEDGYVRNGLEKLEKRVRVEQ 153 (1093)
T ss_pred CCCCchhh-------hhhhhhcccccccchhhccchhHhhccCcccccccccceeeeeeeeeec
Confidence 33332211 111235666778899999999999994 36899999999999888764
No 45
>KOG0511 consensus Ankyrin repeat protein [General function prediction only]
Probab=96.40 E-value=0.006 Score=55.71 Aligned_cols=102 Identities=25% Similarity=0.288 Sum_probs=72.8
Q ss_pred HHHHHhhcCCCC---CCeEEEe-CCeEEeeehhhhhccCHHHHHhhccccccCcceEEEcCCCHHHHHHHHHHHccCCCC
Q 018260 188 DHFGMLLENEES---SDITFNV-VGEKFHAHKLVLAARSPVFETEFLDAMEEDNHEIVVTDMEPKVFKALLHFIYKDTLI 263 (359)
Q Consensus 188 ~~l~~~~~~~~~---~Dv~i~v-~~~~~~~hk~iLa~~S~~F~~~~~~~~~e~~~~i~l~~~~~~~~~~~L~~iY~~~~~ 263 (359)
.++..++.+..+ .|+.+.. +|+.|-|||..|++||.+|..-+..-+.. ..+|.-..+-+..|..+|+|+|-+.-
T Consensus 135 ahi~s~l~dt~l~~~~di~f~~q~g~~f~ahkfll~arSs~~~~k~v~~~~~-~heI~~~~v~~~~f~~flk~lyl~~n- 212 (516)
T KOG0511|consen 135 AHIQSSLRDTFLGCCHDIDFLQQEGANFDAHKFLLEARSSNYFPKDVMFYVQ-GHEIEAHRVILSAFSPFLKQLYLNTN- 212 (516)
T ss_pred hHHHHHhhccccccccchHHHhhccccccHHHHHHHhhhcccCchhhhhccc-cCchhhhhhhHhhhhHHHHHHHHhhh-
Confidence 556666666543 5887776 57888899999999999886544321110 45666677889999999999998732
Q ss_pred CcccCCCCCCCCCCCCcHHHHHHHHHHhhccChhHHHHHHHH
Q 018260 264 EDGECSASSSSCVPSVSDTLEAKLLAAAEKYVLPRLRLMCES 305 (359)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~ll~~A~~~~~~~L~~~ce~ 305 (359)
.+-......|+.+..+|+++.|....+.
T Consensus 213 --------------a~~~~qynallsi~~kF~~e~l~~~~~k 240 (516)
T KOG0511|consen 213 --------------AEWKDQYNALLSIEVKFSKEKLSLEISK 240 (516)
T ss_pred --------------hhhhhHHHHHHhhhhhccHHHhHHHHhh
Confidence 1334456889999999999888665443
No 46
>PF03931 Skp1_POZ: Skp1 family, tetramerisation domain; InterPro: IPR016073 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []. It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a POZ domain with a core structure consisting of beta(2)/alpha(2)/beta(2)/alpha(2) in two layers, alpha/beta. This domain is found at the N-terminal of SKP1 proteins [] as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. ; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 1LM8_C 2XAI_E 1VCB_E 3ZRC_K 3ZRF_E 3DCG_B 2C9W_C 1LQB_B 2IZV_C 1HV2_A ....
Probab=96.13 E-value=0.035 Score=37.79 Aligned_cols=56 Identities=11% Similarity=0.295 Sum_probs=42.8
Q ss_pred eEEEe-CCeEEeeehhhhhccCHHHHHhhccccccCcceEEEcCCCHHHHHHHHHHHcc
Q 018260 202 ITFNV-VGEKFHAHKLVLAARSPVFETEFLDAMEEDNHEIVVTDMEPKVFKALLHFIYK 259 (359)
Q Consensus 202 v~i~v-~~~~~~~hk~iLa~~S~~F~~~~~~~~~e~~~~i~l~~~~~~~~~~~L~~iY~ 259 (359)
++|.. +|+.|.+.+.++. .|..++.|+.+.. .....|+|++++...++.+++|++.
T Consensus 3 v~L~SsDg~~f~V~~~~a~-~S~~i~~ml~~~~-~~~~~Ipl~~v~~~~L~kViewc~~ 59 (62)
T PF03931_consen 3 VKLVSSDGQEFEVSREAAK-QSKTIKNMLEDLG-DEDEPIPLPNVSSRILKKVIEWCEH 59 (62)
T ss_dssp EEEEETTSEEEEEEHHHHT-TSHHHHHHHHCTC-CCGTEEEETTS-HHHHHHHHHHHHH
T ss_pred EEEEcCCCCEEEeeHHHHH-HhHHHHHHHhhhc-ccccccccCccCHHHHHHHHHHHHh
Confidence 34443 6899999998765 8999999996532 2222799999999999999999963
No 47
>KOG1724 consensus SCF ubiquitin ligase, Skp1 component [Posttranslational modification, protein turnover, chaperones]
Probab=95.90 E-value=0.067 Score=43.92 Aligned_cols=110 Identities=16% Similarity=0.172 Sum_probs=73.1
Q ss_pred CCeEEeeehhhhhccCHHHHHhhccccccC-cceEEEcCCCHHHHHHHHHHHccCCCCCcc--c---------CCC--CC
Q 018260 207 VGEKFHAHKLVLAARSPVFETEFLDAMEED-NHEIVVTDMEPKVFKALLHFIYKDTLIEDG--E---------CSA--SS 272 (359)
Q Consensus 207 ~~~~~~~hk~iLa~~S~~F~~~~~~~~~e~-~~~i~l~~~~~~~~~~~L~~iY~~~~~~~~--~---------~~~--~~ 272 (359)
+|+.|.+-..++ ..|..+.+++...--.. ...|+|+.+....|..+|.|++.-.-+... + +.. ..
T Consensus 13 DG~~f~ve~~~a-~~s~~i~~~~~~~~~~~~~~~IPl~nV~~~iL~kVIewC~~Hk~d~~~~~~~~~~~~~~~i~~WD~~ 91 (162)
T KOG1724|consen 13 DGEIFEVEEEVA-RQSQTISAHMIEDGCADENDPIPLPNVTSKILKKVIEWCKKHKDDDPANPEDKELPEETDIPEWDAE 91 (162)
T ss_pred CCceeehhHHHH-HHhHHHHHHHHHcCCCccCCccccCccCHHHHHHHHHHHHHcccccccccccccccccCCccHHHHH
Confidence 678888887654 57788888775332222 237999999999999999999873321110 0 000 00
Q ss_pred CCCCCCCcHHHHHHHHHHhhccChhHHHHHHHHHHhccCChhhHHHHH
Q 018260 273 SSCVPSVSDTLEAKLLAAAEKYVLPRLRLMCESVLCKVISVNSVAHTL 320 (359)
Q Consensus 273 ~~~~~~~~~~~~~~ll~~A~~~~~~~L~~~ce~~L~~~l~~~n~~~~l 320 (359)
+. .++...+.+|+.+|+++++++|..+|.+.+...+...+.-++.
T Consensus 92 Fl---k~d~~tLfdli~AAnyLdi~gLl~~~ck~va~mikgktpeEir 136 (162)
T KOG1724|consen 92 FL---KVDQGTLFDLILAANYLDIKGLLDLTCKTVANMIKGKTPEEIR 136 (162)
T ss_pred HH---hcCHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHccCCHHHHH
Confidence 00 1344678999999999999999999999887655444433333
No 48
>KOG1778 consensus CREB binding protein/P300 and related TAZ Zn-finger proteins [Transcription]
Probab=95.06 E-value=0.02 Score=52.31 Aligned_cols=141 Identities=21% Similarity=0.231 Sum_probs=113.9
Q ss_pred CeEEEeCCeEEeeehhhhhccCHHHHHhhccccccC-cceEEEcCCCHHHHHHHHHHHccCCCCCcccCCCCCCCCCCCC
Q 018260 201 DITFNVVGEKFHAHKLVLAARSPVFETEFLDAMEED-NHEIVVTDMEPKVFKALLHFIYKDTLIEDGECSASSSSCVPSV 279 (359)
Q Consensus 201 Dv~i~v~~~~~~~hk~iLa~~S~~F~~~~~~~~~e~-~~~i~l~~~~~~~~~~~L~~iY~~~~~~~~~~~~~~~~~~~~~ 279 (359)
|..+...+..+.+|+.+|+..|+.|..+....-..+ ..-+.+..+....+..+.+++|.. +.. .-
T Consensus 28 ~~~~~~~~~~~~~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~l~~~-~ek-------------~e 93 (319)
T KOG1778|consen 28 VEIVTDVKDLIPAHSLVLGPASPVFKKVLKQPCRKSLVKGNKILGVPCKAVNVFIRFLYSS-LEK-------------HE 93 (319)
T ss_pred hhhhhhhhhhhHHHHhcccccchHHHHHHhhhcchhhhhcceeecccccccchhhhhhccc-hhh-------------hH
Confidence 444445667899999999999999998887662222 666788888899999999999988 321 12
Q ss_pred cHHHHHHHHHHhhccChhHHHHHHHHHHhc-cCChhhHHHHHHHHHhcCChHHHHHHHHHHHHhHHHHhcCCcccCC
Q 018260 280 SDTLEAKLLAAAEKYVLPRLRLMCESVLCK-VISVNSVAHTLALADRHCAMDLKSVCLKFAAENLVGGLGSIENLGI 355 (359)
Q Consensus 280 ~~~~~~~ll~~A~~~~~~~L~~~ce~~L~~-~l~~~n~~~~l~~A~~~~~~~L~~~~~~~i~~~~~~~~~~~~f~~l 355 (359)
.......++.+...|.++.++..|...+.. .++..++...+..+..+....|...+...+...+....+++.+..+
T Consensus 94 ~~~~~ihll~~~~~~~v~~~~~d~~~~~~~~~~~~r~~flvl~~~~~~~~~~lr~a~hss~~~~~~~H~~t~~~~~~ 170 (319)
T KOG1778|consen 94 MVFFDIHLLALSHVYVVPQPKADCDPILECGLFDKRNVFLVLQLAEHCDFSDLRRAKHSSIMLLFDLHLQTEKWFAY 170 (319)
T ss_pred HHHHHHHHHhhhhhhhccCccccCCccccchhhhhHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhcccCceee
Confidence 334566777777899999999999988875 6788899999999999999999999999999999999988877654
No 49
>KOG2715 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=94.87 E-value=0.1 Score=42.40 Aligned_cols=96 Identities=20% Similarity=0.239 Sum_probs=72.4
Q ss_pred CCeEEEeCCeEEeeehhhhhccCHHHHHhhccccccC-----cceEEEcCCCHHHHHHHHHHHccCCCCCcccCCCCCCC
Q 018260 200 SDITFNVVGEKFHAHKLVLAARSPVFETEFLDAMEED-----NHEIVVTDMEPKVFKALLHFIYKDTLIEDGECSASSSS 274 (359)
Q Consensus 200 ~Dv~i~v~~~~~~~hk~iLa~~S~~F~~~~~~~~~e~-----~~~i~l~~~~~~~~~~~L~~iY~~~~~~~~~~~~~~~~ 274 (359)
.-|.+.|||..|..-|.-|..-+.-|-.-|-..-.+. ..--.+-|-+|.-|-.+|+|+..|++
T Consensus 21 ~wVRlNVGGt~f~TtktTl~rdp~sFl~rl~q~~~~l~sdrDetGAYlIDRDP~~FgpvLNylRhgkl------------ 88 (210)
T KOG2715|consen 21 LWVRLNVGGTVFLTTKTTLPRDPKSFLYRLCQREKDLPSDRDETGAYLIDRDPFYFGPVLNYLRHGKL------------ 88 (210)
T ss_pred EEEEEecCCEEEEeeeeccccCcHHHHHHHHhcccCCCCCccccCceEeccCcchHHHHHHHHhcchh------------
Confidence 3477789999999999999988855555443322211 23355667799999999999999998
Q ss_pred CCCCCcHHHHHHHHHHhhccChhHHHHHHHHHHhcc
Q 018260 275 CVPSVSDTLEAKLLAAAEKYVLPRLRLMCESVLCKV 310 (359)
Q Consensus 275 ~~~~~~~~~~~~ll~~A~~~~~~~L~~~ce~~L~~~ 310 (359)
.++.-.-..+|.-|++|.++.|.++..+.|...
T Consensus 89 ---vl~~l~eeGvL~EAefyn~~~li~likd~i~dR 121 (210)
T KOG2715|consen 89 ---VLNKLSEEGVLEEAEFYNDPSLIQLIKDRIQDR 121 (210)
T ss_pred ---hhhhhhhhccchhhhccCChHHHHHHHHHHHHH
Confidence 344444467899999999999999888877653
No 50
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=94.68 E-value=0.026 Score=53.63 Aligned_cols=79 Identities=23% Similarity=0.344 Sum_probs=63.6
Q ss_pred eeeeeEEEEEEccccccccC---CCCCeeeeceee--ecCeEEEEEEEcCCCCCCCCCCcEEEEEEeccC------Cccc
Q 018260 27 QTINGSHHFTIKGYSLSKGI---GIGKHIASDNFS--VGGYQWAIYFYPDGKNPEDNSTYVSVFIALASE------GTDV 95 (359)
Q Consensus 27 ~~~~~~~~w~I~~fs~~~~~---~~~~~~~S~~f~--~gg~~W~l~~~p~g~~~~~~~~~lsl~L~~~~~------~w~~ 95 (359)
....|+..|+|.+|...+.- ..+..+.|+.|. .+||.-..++|-||+.. +.+.++|+|+....+ .|+.
T Consensus 276 ~~~~g~~iwki~~~~~~~~e~~~~~~~~~~S~~f~t~~~Gyk~~~~~~lng~g~-~~~~~~s~~~~~~~ge~d~~l~wpf 354 (391)
T KOG0297|consen 276 RSYDGTLIWKIPDYGRKKQEAVAGATLSLFSPAFYTSKYGYKLCARIYLNGDGT-GKGTHLSLYFVVMRGEYDALLPWPF 354 (391)
T ss_pred hccCCEEEEEecchhhhhHHHHhccCccccccccccccccHHHHhHhhhcCCCC-CCcceeeeeeeecccCcccccccCC
Confidence 34679999999999554431 345689999997 47999999999999864 367799999988653 4999
Q ss_pred eeeEEEEEEec
Q 018260 96 RALFELTLVDQ 106 (359)
Q Consensus 96 ~~~~~~~l~~~ 106 (359)
+-++++.++++
T Consensus 355 ~~~v~~~l~dq 365 (391)
T KOG0297|consen 355 RQKVTLMLLDQ 365 (391)
T ss_pred CCceEEEEecc
Confidence 99999999999
No 51
>COG5201 SKP1 SCF ubiquitin ligase, SKP1 component [Posttranslational modification, protein turnover, chaperones]
Probab=93.43 E-value=0.85 Score=35.38 Aligned_cols=113 Identities=17% Similarity=0.188 Sum_probs=71.6
Q ss_pred CeEEE-eCCeEEeeehhhhhccCHHHHHhhccccccCcceEEEcCCCHHHHHHHHHHHccCCCCCcccCCCCCCC-CCC-
Q 018260 201 DITFN-VVGEKFHAHKLVLAARSPVFETEFLDAMEEDNHEIVVTDMEPKVFKALLHFIYKDTLIEDGECSASSSS-CVP- 277 (359)
Q Consensus 201 Dv~i~-v~~~~~~~hk~iLa~~S~~F~~~~~~~~~e~~~~i~l~~~~~~~~~~~L~~iY~~~~~~~~~~~~~~~~-~~~- 277 (359)
-+.+. .+|..|.+.+. .|-||-..+.|+.... +....|.++.+...+|+.+++|+-...-....+...-.+. -.|
T Consensus 3 ~i~l~s~dge~F~vd~~-iAerSiLikN~l~d~~-~~n~p~p~pnVrSsvl~kv~ew~ehh~~s~sede~d~~~rks~p~ 80 (158)
T COG5201 3 MIELESIDGEIFRVDEN-IAERSILIKNMLCDST-ACNYPIPAPNVRSSVLMKVQEWMEHHTSSLSEDENDLEIRKSKPS 80 (158)
T ss_pred ceEEEecCCcEEEehHH-HHHHHHHHHHHhcccc-ccCCCCcccchhHHHHHHHHHHHHhccccCCCccChHhhhccCCc
Confidence 34554 36777877764 5778888888774321 1144578889999999999999954332222111100000 000
Q ss_pred --------CCcHHHHHHHHHHhhccChhHHHHHHHHHHhccCChhh
Q 018260 278 --------SVSDTLEAKLLAAAEKYVLPRLRLMCESVLCKVISVNS 315 (359)
Q Consensus 278 --------~~~~~~~~~ll~~A~~~~~~~L~~~ce~~L~~~l~~~n 315 (359)
..+.+.+.++..+|++++++.|.++|++.+.+.+...+
T Consensus 81 D~wdr~Fm~vDqemL~eI~laaNYL~ikpLLd~gCKivaemirgkS 126 (158)
T COG5201 81 DFWDRFFMEVDQEMLLEICLAANYLEIKPLLDLGCKIVAEMIRGKS 126 (158)
T ss_pred cHHHHHHHHhhHHHHHHHHHhhccccchHHHHHHHHHHHHHHccCC
Confidence 12335667888899999999999999998766554443
No 52
>PF01466 Skp1: Skp1 family, dimerisation domain; InterPro: IPR016072 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []. It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a dimerisation domain found at the C-terminal of SKP1 proteins [], as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. This domain is multi-helical in structure, and consists of an interlocked herterodimer in F-box proteins.; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 2P1O_A 3OGL_G 3OGM_A 3C6O_A 2P1N_A 2P1Q_A 3OGK_I 3C6N_A 3C6P_A 2P1P_A ....
Probab=91.72 E-value=0.31 Score=34.86 Aligned_cols=49 Identities=18% Similarity=0.230 Sum_probs=33.1
Q ss_pred CcHHHHHHHHHHhhccChhHHHHHHHHHHhccC---ChhhHHHHHHHHHhcC
Q 018260 279 VSDTLEAKLLAAAEKYVLPRLRLMCESVLCKVI---SVNSVAHTLALADRHC 327 (359)
Q Consensus 279 ~~~~~~~~ll~~A~~~~~~~L~~~ce~~L~~~l---~~~n~~~~l~~A~~~~ 327 (359)
.+...+.+|+.+|++++++.|...|...+...+ +++.+..++.+...+.
T Consensus 11 ~~~~~L~~l~~AA~yL~I~~L~~~~~~~iA~~i~gks~eeir~~fgi~~d~t 62 (78)
T PF01466_consen 11 VDNDELFDLLNAANYLDIKGLLDLCCKYIANMIKGKSPEEIRKYFGIENDLT 62 (78)
T ss_dssp S-HHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-HHHHHHHHT---TSS
T ss_pred cCHHHHHHHHHHHHHHcchHHHHHHHHHHHHHhcCCCHHHHHHHcCCCCCCC
Confidence 456789999999999999999999999887654 4444555554444433
No 53
>KOG2723 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=81.55 E-value=4.4 Score=35.08 Aligned_cols=94 Identities=14% Similarity=0.151 Sum_probs=57.5
Q ss_pred CCC-eEEEeCCeEEeeehh-hhhccCHHHHHhhccccccC---cceEEEcCCCHHHHHHHHHHHccCCCCCcccCCCCCC
Q 018260 199 SSD-ITFNVVGEKFHAHKL-VLAARSPVFETEFLDAMEED---NHEIVVTDMEPKVFKALLHFIYKDTLIEDGECSASSS 273 (359)
Q Consensus 199 ~~D-v~i~v~~~~~~~hk~-iLa~~S~~F~~~~~~~~~e~---~~~i~l~~~~~~~~~~~L~~iY~~~~~~~~~~~~~~~ 273 (359)
+.| +.+.|+|+-|..-.. +++-.-.....||.+...-. .....| |=+-..|+.+|+|+-+..+..+
T Consensus 7 ~~~~v~lnvGG~~ytt~l~tL~~~~ds~L~~~f~~~~~~~~d~~g~~fI-DRDG~lFRyvL~~LRt~~l~lp-------- 77 (221)
T KOG2723|consen 7 YPDVVELNVGGAIYTTRLGTLTKFPDSMLARMFSGELPLLRDSKGRYFI-DRDGFLFRYVLDYLRTKALLLP-------- 77 (221)
T ss_pred cCCceeeccCCeEEEeeccceeechHHHHHhhcCCCCCccccccccEEE-cCCcchHHHHHHHhcccccccc--------
Confidence 334 455677765544333 23333345556665422211 333444 4477889999999999544211
Q ss_pred CCCCCCcHHHHHHHHHHhhccChhHHHHHHHHH
Q 018260 274 SCVPSVSDTLEAKLLAAAEKYVLPRLRLMCESV 306 (359)
Q Consensus 274 ~~~~~~~~~~~~~ll~~A~~~~~~~L~~~ce~~ 306 (359)
....++..|+..|+.|+++.+..++.+.
T Consensus 78 -----e~f~e~~~L~rEA~f~~l~~~~~~l~~~ 105 (221)
T KOG2723|consen 78 -----EDFAEVERLVREAEFFQLEAPVTYLLNS 105 (221)
T ss_pred -----hhhhhHHHHHHHHHHHccccHHHHHhcc
Confidence 2336789999999999999887766554
No 54
>PF11822 DUF3342: Domain of unknown function (DUF3342); InterPro: IPR021777 This family of proteins are functionally uncharacterised. This family is found in bacteria. This presumed domain is typically between 170 to 303 amino acids in length. The N-terminal half of this family is a BTB-like domain.
Probab=77.92 E-value=1 Score=40.98 Aligned_cols=42 Identities=14% Similarity=0.184 Sum_probs=39.5
Q ss_pred cCChhhHHHHHHHHHhcCChHHHHHHHHHHHHhHHHHhcCCc
Q 018260 310 VISVNSVAHTLALADRHCAMDLKSVCLKFAAENLVGGLGSIE 351 (359)
Q Consensus 310 ~l~~~n~~~~l~~A~~~~~~~L~~~~~~~i~~~~~~~~~~~~ 351 (359)
.+++.|++.+|.-++...++.|.+.|+.|+..|+.+|+.++-
T Consensus 71 ~l~~~NvvsIliSS~FL~M~~Lve~cl~y~~~~~~~Iv~~~~ 112 (317)
T PF11822_consen 71 SLTPSNVVSILISSEFLQMESLVEECLQYCHDHMSEIVASPC 112 (317)
T ss_pred cCCcCcEEEeEehhhhhccHHHHHHHHHHHHHhHHHHHcCCC
Confidence 579999999999999999999999999999999999998763
No 55
>PF07707 BACK: BTB And C-terminal Kelch; InterPro: IPR011705 This domain is found associated with (IPR000210 from INTERPRO) and (IPR006652 from INTERPRO). BTB (broad-complex, tramtrack and bric a brac) is a Kelch related domain, also known as the POZ domain []. BTB proteins are divided into subgroups depending on what domain lies at the C terminus. Despite the divergence in sequences, the BTB fold is highly conserved. BTB-Kelch proteins have Kelch repeats that form a beta-propeller that can interact with actin filaments []. BTB and C-terminal Kelch (BACK) together constitute a novel conserved domain, which is thought to have a possible role in substrate orientation in Cullin3-based E3 ligase complexes. Four domains, namely the BTB domain, a kelch domain, a BACK domain, and an intervening region (IVR) make up the aryl hydrocarbon receptor (AHR); a ligand-activated transcription factor []. This entry represents the domain associated with BTB and Kelch.; PDB: 3HVE_A 2EQX_A 3I3N_A 4AP2_A 4APF_A.
Probab=77.52 E-value=5.3 Score=29.61 Aligned_cols=59 Identities=22% Similarity=0.291 Sum_probs=39.3
Q ss_pred HHHHHHhhccChhHHHHHHHHHHhccC------------ChhhHHHHHHHHHh--cCChHHHHHHHHHHHHhH
Q 018260 285 AKLLAAAEKYVLPRLRLMCESVLCKVI------------SVNSVAHTLALADR--HCAMDLKSVCLKFAAENL 343 (359)
Q Consensus 285 ~~ll~~A~~~~~~~L~~~ce~~L~~~l------------~~~n~~~~l~~A~~--~~~~~L~~~~~~~i~~~~ 343 (359)
.+++.+|+.|++..|...|.+++..+. +.+.+..++.--+. .+...+-+.++.++..+.
T Consensus 2 ~~i~~~A~~~~~~~L~~~~~~~i~~nf~~v~~~~~f~~L~~~~l~~iL~~~~l~v~~E~~v~~av~~W~~~~~ 74 (103)
T PF07707_consen 2 LSIYRLAEKYGLEELAEACLRFIAKNFNEVSKSDEFLELPFDQLIEILSSDDLNVSSEDDVFEAVLRWLKHNP 74 (103)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHTHHHHTTSHHHHCS-HHHHHHHHHTSS--ECTCCCHHHHHHHHHHCTH
T ss_pred hhHHHHHHHcChHHHHHHHHHHHHHHHHHHccchhhhcCCHHHHHHHHhccccccccHHHHHHHHHHHHHhCH
Confidence 468899999999999999999997642 23334444432221 234568888889988553
No 56
>PF00651 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (for BR-C, ttk and bab) [] or POZ (for Pox virus and Zinc finger) [] domain is present near the N terminus of a fraction of zinc finger (IPR007087 from INTERPRO) proteins and in proteins that contain the IPR006652 from INTERPRO motif such as Kelch and a family of pox virus proteins. The BTB/POZ domain mediates homomeric dimerisation and in some instances heteromeric dimerisation []. The structure of the dimerised PLZF BTB/POZ domain has been solved and consists of a tightly intertwined homodimer. The central scaffolding of the protein is made up of a cluster of alpha-helices flanked by short beta-sheets at both the top and bottom of the molecule []. POZ domains from several zinc finger proteins have been shown to mediate transcriptional repression and to interact with components of histone deacetylase co-repressor complexes including N-CoR and SMRT [, , ]. The POZ or BTB domain is also known as BR-C/Ttk or ZiN.; GO: 0005515 protein binding; PDB: 3M5B_A 1R28_B 3LBZ_A 3E4U_F 3BIM_B 1R2B_A 1R29_A 2VPK_A 2YY9_B 3GA1_A ....
Probab=77.10 E-value=4.1 Score=30.60 Aligned_cols=31 Identities=39% Similarity=0.495 Sum_probs=28.5
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHHHHHh
Q 018260 312 SVNSVAHTLALADRHCAMDLKSVCLKFAAEN 342 (359)
Q Consensus 312 ~~~n~~~~l~~A~~~~~~~L~~~~~~~i~~~ 342 (359)
+.+++..++.+|..++++.|+..|.+++.++
T Consensus 80 ~~~~~~~ll~lA~~~~~~~L~~~~~~~l~~~ 110 (111)
T PF00651_consen 80 SDENVEELLELADKLQIPELKKACEKFLQES 110 (111)
T ss_dssp -TTTHHHHHHHHHHTTBHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCcHHHHHHHHHHHHhC
Confidence 3889999999999999999999999999875
No 57
>KOG2075 consensus Topoisomerase TOP1-interacting protein BTBD1 [Function unknown]
Probab=67.07 E-value=4.2 Score=38.99 Aligned_cols=43 Identities=23% Similarity=0.302 Sum_probs=34.7
Q ss_pred CChhhHHHHHHHHHhcCChHHHHHHHHHHHHhHHHHhcCCcccCCc
Q 018260 311 ISVNSVAHTLALADRHCAMDLKSVCLKFAAENLVGGLGSIENLGIK 356 (359)
Q Consensus 311 l~~~n~~~~l~~A~~~~~~~L~~~~~~~i~~~~~~~~~~~~f~~l~ 356 (359)
+..+|++.+|..|.+|....|.+.|++||..+ ++...+|++|+
T Consensus 185 ~~~dtvi~tl~~AkKY~VpaLer~CVkflr~~---l~~~naf~~L~ 227 (521)
T KOG2075|consen 185 LAADTVITTLYAAKKYLVPALERQCVKFLRKN---LMADNAFLELF 227 (521)
T ss_pred hhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh---cCChHHHHHHH
Confidence 57899999999999999999999999999865 33344444444
No 58
>KOG3840 consensus Uncharaterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=66.10 E-value=9.9 Score=34.30 Aligned_cols=66 Identities=18% Similarity=0.333 Sum_probs=47.6
Q ss_pred CCCCCeEEEeCCeEEeeehhhhhccCH-HHHHhhcccccc---C-cceEEE-cCCCHHHHHHHHHHHccCCC
Q 018260 197 EESSDITFNVVGEKFHAHKLVLAARSP-VFETEFLDAMEE---D-NHEIVV-TDMEPKVFKALLHFIYKDTL 262 (359)
Q Consensus 197 ~~~~Dv~i~v~~~~~~~hk~iLa~~S~-~F~~~~~~~~~e---~-~~~i~l-~~~~~~~~~~~L~~iY~~~~ 262 (359)
+...-++..+++..|-+.+.+|.+.-. -.-.||.+++.- + ..+.++ ++++..+|+++|+|--+|.+
T Consensus 93 g~~~~~t~lvd~~rf~v~q~llt~~p~Tmlg~mf~~g~~f~~pNErgEyeVAdGi~s~vFRAILdYYksG~i 164 (438)
T KOG3840|consen 93 GEGDKVCLLVDQTRFLVSQRLLTSKPDTMLGRMFSMGADLVSPNERDEFEVADGMTSSCFRAILDYYQSGTM 164 (438)
T ss_pred CCCcceEEEeeeEEEEeeeeeecCCcchhhhhhhcccccccCCCcCCceehhcchhHHHHHHHHHHHhcCce
Confidence 344467888899999999999887632 334555544321 1 556666 47999999999999999876
No 59
>PHA03098 kelch-like protein; Provisional
Probab=50.25 E-value=17 Score=36.09 Aligned_cols=33 Identities=21% Similarity=0.312 Sum_probs=30.3
Q ss_pred cCChhhHHHHHHHHHhcCChHHHHHHHHHHHHh
Q 018260 310 VISVNSVAHTLALADRHCAMDLKSVCLKFAAEN 342 (359)
Q Consensus 310 ~l~~~n~~~~l~~A~~~~~~~L~~~~~~~i~~~ 342 (359)
.++.+|+.+++..|+.++.+.|+..|.+|+..+
T Consensus 72 ~i~~~~~~~ll~~A~~l~~~~l~~~C~~~l~~~ 104 (534)
T PHA03098 72 NITSNNVKDILSIANYLIIDFLINLCINYIIKI 104 (534)
T ss_pred EEcHHHHHHHHHHHHHhCcHHHHHHHHHHHHHh
Confidence 368899999999999999999999999999854
No 60
>PHA02713 hypothetical protein; Provisional
Probab=49.24 E-value=26 Score=35.21 Aligned_cols=34 Identities=26% Similarity=0.231 Sum_probs=31.0
Q ss_pred cCChhhHHHHHHHHHhcCChHHHHHHHHHHHHhH
Q 018260 310 VISVNSVAHTLALADRHCAMDLKSVCLKFAAENL 343 (359)
Q Consensus 310 ~l~~~n~~~~l~~A~~~~~~~L~~~~~~~i~~~~ 343 (359)
.++.+|+..+|..|+.++.+.|++.|.+|+..++
T Consensus 90 ~i~~~nv~~ll~aA~~lqi~~l~~~C~~~l~~~l 123 (557)
T PHA02713 90 HISSMNVIDVLKCADYLLIDDLVTDCESYIKDYT 123 (557)
T ss_pred CCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHhhC
Confidence 4789999999999999999999999999998543
No 61
>PF06887 DUF1265: Protein of unknown function (DUF1265); InterPro: IPR009676 This family represents a conserved region approximately 50 residues long within a number of proteins of unknown function that seem to be restricted to Caenorhabditis elegans.
Probab=38.39 E-value=42 Score=21.17 Aligned_cols=34 Identities=12% Similarity=0.129 Sum_probs=26.8
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHH-HhHHHHhc
Q 018260 315 SVAHTLALADRHCAMDLKSVCLKFAA-ENLVGGLG 348 (359)
Q Consensus 315 n~~~~l~~A~~~~~~~L~~~~~~~i~-~~~~~~~~ 348 (359)
-+..+|.+|+......|+..|..-|. -||.+.++
T Consensus 12 YV~nmLivA~d~~f~~v~~~C~Atii~yHf~DF~R 46 (48)
T PF06887_consen 12 YVCNMLIVAHDARFGNVQNCCIATIISYHFHDFIR 46 (48)
T ss_pred HHHhHheeeccccchHHHHHHHHHHHHHHHHHHHh
Confidence 46778888998899999999998876 66766553
No 62
>smart00875 BACK BTB And C-terminal Kelch. The BACK domain is found juxtaposed to the BTB domain; they are separated by as little as two residues.
Probab=37.79 E-value=33 Score=24.85 Aligned_cols=25 Identities=24% Similarity=0.087 Sum_probs=21.4
Q ss_pred HHHHHhhccChhHHHHHHHHHHhcc
Q 018260 286 KLLAAAEKYVLPRLRLMCESVLCKV 310 (359)
Q Consensus 286 ~ll~~A~~~~~~~L~~~ce~~L~~~ 310 (359)
+++.+|+.|+.+.|...|.+++.++
T Consensus 3 ~i~~~a~~~~~~~L~~~~~~~i~~n 27 (101)
T smart00875 3 GIRRFAELYGLEELLEKALRFILKN 27 (101)
T ss_pred hHHHHHHHhChHHHHHHHHHHHHHH
Confidence 5778899999999999999987654
No 63
>PHA02790 Kelch-like protein; Provisional
Probab=36.75 E-value=55 Score=32.17 Aligned_cols=33 Identities=12% Similarity=0.095 Sum_probs=29.7
Q ss_pred CCcHHHHHHHHHHhhccChhHHHHHHHHHHhcc
Q 018260 278 SVSDTLEAKLLAAAEKYVLPRLRLMCESVLCKV 310 (359)
Q Consensus 278 ~~~~~~~~~ll~~A~~~~~~~L~~~ce~~L~~~ 310 (359)
.++.+|..+++.+|+.|++++|...+.+|+.++
T Consensus 119 ~l~~~NCl~i~~~A~~y~~~~L~~~a~~fi~~n 151 (480)
T PHA02790 119 DFRKEYCVECYMMGIEYGLSNLLCHTKDFIAKH 151 (480)
T ss_pred hCCcchHHHHHHHHHHhCHHHHHHHHHHHHHHh
Confidence 367789999999999999999999999998764
No 64
>KOG4682 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=34.06 E-value=34 Score=32.35 Aligned_cols=33 Identities=24% Similarity=0.246 Sum_probs=29.6
Q ss_pred CCcHHHHHHHHHHhhccChhHHHHHHHHHHhcc
Q 018260 278 SVSDTLEAKLLAAAEKYVLPRLRLMCESVLCKV 310 (359)
Q Consensus 278 ~~~~~~~~~ll~~A~~~~~~~L~~~ce~~L~~~ 310 (359)
.++..++...+.+|.+|+++.++..|.+.|..+
T Consensus 169 ~lspkta~~yYea~ckYgle~vk~kc~ewl~~n 201 (488)
T KOG4682|consen 169 TLSPKTACGYYEAACKYGLESVKKKCLEWLLNN 201 (488)
T ss_pred hcChhhhhHhhhhhhhhhhHHHHHHHHHHHHHh
Confidence 467789999999999999999999999998753
No 65
>PF09593 Pathogen_betaC1: Beta-satellite pathogenicity beta C1 protein; InterPro: IPR018583 Cotton leaf-curl disease - CLCuD - is of major economic importance in cotton-growing areas of the far-east. The infectious agent appears to be a single-stranded DNA molecule of approx 1350 nucleotides in length, which, when inoculated with the Begomovirus into cotton, induces symptoms typical of CLCuD. This molecule requires the Begomovirus for replication and encapsidation []. DNA beta encodes a single protein, betaC1. The intracellular distribution of betaC1 is consistent with the hypothesis that it has a role in transporting the DNA A of Begomovirus from the nuclear site of replication to the plasmodesmatal exit sites of the infected cell. The DNA beta-encoded protein, betaC1, is the determinant of both pathogenicity and suppression of gene silencing [].
Probab=31.82 E-value=1.2e+02 Score=23.47 Aligned_cols=55 Identities=20% Similarity=0.307 Sum_probs=34.7
Q ss_pred CCeEEeeehhhhhccCHHHHHhhccccccCcceEEEc-CC--CHHHHHHHHHHHccCCC
Q 018260 207 VGEKFHAHKLVLAARSPVFETEFLDAMEEDNHEIVVT-DM--EPKVFKALLHFIYKDTL 262 (359)
Q Consensus 207 ~~~~~~~hk~iLa~~S~~F~~~~~~~~~e~~~~i~l~-~~--~~~~~~~~L~~iY~~~~ 262 (359)
++..+.+|-.+++++||....-=. ...=.-..+..+ |+ --+..+..|.++|.+.-
T Consensus 20 ~~~~i~V~i~l~ST~sP~l~k~~f-~IpY~~~~ii~PFDFNglEe~I~~~l~~mY~~s~ 77 (117)
T PF09593_consen 20 EDMSIFVHIQLFSTRSPALIKKKF-IIPYTHEGIIPPFDFNGLEEGIKNTLKIMYKDSK 77 (117)
T ss_pred CCCEEEEEEEEEECCChHHheEEE-EEeccCCCeECCcccCcHHHHHHHHHHHHhCCCC
Confidence 467999999999999998753210 000011111111 22 35779999999999864
No 66
>PF01466 Skp1: Skp1 family, dimerisation domain; InterPro: IPR016072 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []. It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a dimerisation domain found at the C-terminal of SKP1 proteins [], as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. This domain is multi-helical in structure, and consists of an interlocked herterodimer in F-box proteins.; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 2P1O_A 3OGL_G 3OGM_A 3C6O_A 2P1N_A 2P1Q_A 3OGK_I 3C6N_A 3C6P_A 2P1P_A ....
Probab=31.17 E-value=1e+02 Score=21.68 Aligned_cols=37 Identities=19% Similarity=0.249 Sum_probs=29.0
Q ss_pred HHHhccCChhhHHHHHHHHHhcCChHHHHHHHHHHHHhH
Q 018260 305 SVLCKVISVNSVAHTLALADRHCAMDLKSVCLKFAAENL 343 (359)
Q Consensus 305 ~~L~~~l~~~n~~~~l~~A~~~~~~~L~~~~~~~i~~~~ 343 (359)
+|+ .++.+.+..++.-|...+...|.+.|.++|...+
T Consensus 7 ~F~--~~~~~~L~~l~~AA~yL~I~~L~~~~~~~iA~~i 43 (78)
T PF01466_consen 7 EFL--DVDNDELFDLLNAANYLDIKGLLDLCCKYIANMI 43 (78)
T ss_dssp HHT---S-HHHHHHHHHHHHHHT-HHHHHHHHHHHHHHH
T ss_pred HHH--HcCHHHHHHHHHHHHHHcchHHHHHHHHHHHHHh
Confidence 455 4588899999999999999999999999998444
No 67
>PF01690 PLRV_ORF5: Potato leaf roll virus readthrough protein; InterPro: IPR002929 This family consists mainly of the Potato leafroll virus (PLrV) read through protein otherwise known as the minor capsid protein. This is generated via a readthrough of open reading frame 3, the coat protein, allowing transcription of open reading frame 5 to give an extended coat protein with a large C-terminal addition or read through domain []. The read through protein is essential for the circulative aphid transmission of PLrV [] and Beet western yellows virus []. The N-terminal region of the luteovirus readthrough domain determines virus binding to Buchnera GroEL and is essential for virus persistence in the aphid [].; GO: 0019028 viral capsid
Probab=25.40 E-value=6.5e+02 Score=24.62 Aligned_cols=8 Identities=13% Similarity=0.206 Sum_probs=3.4
Q ss_pred EEEeeeee
Q 018260 160 INCTVGVV 167 (359)
Q Consensus 160 i~~~v~i~ 167 (359)
+.|+|+..
T Consensus 183 ~SFhl~~~ 190 (465)
T PF01690_consen 183 ISFHLEAT 190 (465)
T ss_pred EEEEEEec
Confidence 34444443
No 68
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=24.08 E-value=1.3e+02 Score=30.35 Aligned_cols=32 Identities=22% Similarity=0.256 Sum_probs=29.8
Q ss_pred cCChhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 018260 310 VISVNSVAHTLALADRHCAMDLKSVCLKFAAE 341 (359)
Q Consensus 310 ~l~~~n~~~~l~~A~~~~~~~L~~~~~~~i~~ 341 (359)
.|+.+|+..++..|..++...+.+.|.+|+.+
T Consensus 101 ~i~~~nVq~ll~aA~~lQi~~v~~~C~~fL~~ 132 (571)
T KOG4441|consen 101 EISEDNVQELLEAASLLQIPEVVDACCEFLES 132 (571)
T ss_pred EechHhHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 46888999999999999999999999999985
No 69
>PF02519 Auxin_inducible: Auxin responsive protein; InterPro: IPR003676 This family consists of the protein products of a gene cluster that encodes a group of auxin-regulated RNAs (small auxin up RNAs, SAURs) []. Proteins from this ARG7 auxin responsive genes family have no identified functional role [].
Probab=21.32 E-value=3.2e+02 Score=20.45 Aligned_cols=54 Identities=20% Similarity=0.309 Sum_probs=37.3
Q ss_pred CeEEEeCC--eEEeeehhhhhccCHHHHHhhccccccC----cceEEEcCCCHHHHHHHHHHH
Q 018260 201 DITFNVVG--EKFHAHKLVLAARSPVFETEFLDAMEED----NHEIVVTDMEPKVFKALLHFI 257 (359)
Q Consensus 201 Dv~i~v~~--~~~~~hk~iLa~~S~~F~~~~~~~~~e~----~~~i~l~~~~~~~~~~~L~~i 257 (359)
-+.+.||+ ++|-+....|. .|.|+.++...-.|- ...|.|+ .+...|+.+|..|
T Consensus 40 ~~~VyVG~~~~Rfvvp~~~L~--hp~f~~LL~~aeeEfG~~~~G~l~iP-C~~~~Fe~~l~~l 99 (100)
T PF02519_consen 40 HFAVYVGEERRRFVVPVSYLN--HPLFQELLEQAEEEFGFDQDGPLTIP-CDVVLFEHLLWLL 99 (100)
T ss_pred eEEEEeCccceEEEechHHcC--chhHHHHHHHHhhhcCcCCCCcEEee-CCHHHHHHHHHHh
Confidence 35566654 67778777774 589999996543332 4567776 7888888888765
Done!