BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 018261
(359 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1ZQ9|A Chain A, Crystal Structure Of Human Dimethyladenosine Transferase
pdb|1ZQ9|B Chain B, Crystal Structure Of Human Dimethyladenosine Transferase
Length = 285
Score = 341 bits (874), Expect = 5e-94, Method: Compositional matrix adjust.
Identities = 174/325 (53%), Positives = 214/325 (65%), Gaps = 46/325 (14%)
Query: 35 GQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEAGKMVIAVELDSRMVLEL 94
GQHILKNPL++ SI+ KA ++ TDV+LE+GPGTGN+T KLLE K V+A ELD R+V EL
Sbjct: 7 GQHILKNPLIINSIIDKAALRPTDVVLEVGPGTGNMTVKLLEKAKKVVACELDPRLVAEL 66
Query: 95 QRRFQSTPYSNRLKVIQGDVLKTDLPYFDICVANIPYQISSPLTFKLLFHQPAFRCAIIM 154
+R Q TP +++L+V+ GDVLKTDLP+FD CVAN+PYQISSP FKLL H+P FRCAI+M
Sbjct: 67 HKRVQGTPVASKLQVLVGDVLKTDLPFFDTCVANLPYQISSPFVFKLLLHRPFFRCAILM 126
Query: 155 FQKEFAMRLVAQPGDKLYCRLSVNTQLHARVSHLLKVGKNNFRPPPKVDSSVVRIEPRKP 214
FQ+EFA+RLVA+PGDKLYCRLS+NTQL ARV HL+KVGKNNFRPPPKV+SSVVRIEP+ P
Sbjct: 127 FQREFALRLVAKPGDKLYCRLSINTQLLARVDHLMKVGKNNFRPPPKVESSVVRIEPKNP 186
Query: 215 RPQVNPVEWDGFLRICFIRKNKTLSSIFRLKNVLSMLEKNYRTXXXXXXXXXXXXGNTEI 274
P +N EWDG +RI F+RKNKTLS+ F+ V +LEKNYR N I
Sbjct: 187 PPPINFQEWDGLVRITFVRKNKTLSAAFKSSAVQQLLEKNYRIHCSVH--------NIII 238
Query: 275 GTDTPSLGDSNGDQXXXXXXXXXXXXXXXXXXXXXXXXXXXXEFKDKVLAVLREGQFEEK 334
D S+ D K+ +L F +K
Sbjct: 239 PEDF-SIAD-------------------------------------KIQQILTSTGFSDK 260
Query: 335 RASKLTQQEFLYLLSLFNKAGIHFS 359
RA + +F+ LL FN GIHFS
Sbjct: 261 RARSMDIDDFIRLLHGFNAEGIHFS 285
>pdb|2H1R|A Chain A, Crystal Structure Of A Dimethyladenosine Transferase From
Plasmodium Falciparum
pdb|2H1R|B Chain B, Crystal Structure Of A Dimethyladenosine Transferase From
Plasmodium Falciparum
Length = 299
Score = 256 bits (654), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 138/325 (42%), Positives = 191/325 (58%), Gaps = 48/325 (14%)
Query: 34 KGQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEAGKMVIAVELDSRMVLE 93
+GQH+LKNP +++ I+ A IKS+D++LEIG GTGNLT KLL K VI +++DSRM+ E
Sbjct: 20 QGQHLLKNPGILDKIIYAAKIKSSDIVLEIGCGTGNLTVKLLPLAKKVITIDIDSRMISE 79
Query: 94 LQRRFQSTPYSNRLKVIQGDVLKTDLPYFDICVANIPYQISSPLTFKLLFHQPAFRCAII 153
+++R Y+N L+V +GD +KT P FD+C ANIPY+ISSPL FKL+ H+P F+CA++
Sbjct: 80 VKKRCLYEGYNN-LEVYEGDAIKTVFPKFDVCTANIPYKISSPLIFKLISHRPLFKCAVL 138
Query: 154 MFQKEFAMRLVAQPGDKLYCRLSVNTQLHARVSHLLKVGKNNFRPPPKVDSSVVRIEPRK 213
MFQKEFA R++A GD Y RL++N +L +V+ + V +++F PPPKVDS +V++ P++
Sbjct: 139 MFQKEFAERMLANVGDSNYSRLTINVKLFCKVTKVCNVNRSSFNPPPKVDSVIVKLIPKE 198
Query: 214 PRPQVNPVEWDGFLRICFIRKNKTLSSIFRLKNVLSMLEKNYRTXXXXXXXXXXXXGNTE 273
N EWD LRICF RK KTL +IF+ VL+MLE NY+ N +
Sbjct: 199 SSFLTNFDEWDNLLRICFSRKRKTLHAIFKRNAVLNMLEHNYKNWCTL---------NKQ 249
Query: 274 IGTDTPSLGDSNGDQXXXXXXXXXXXXXXXXXXXXXXXXXXXXEFKDKVLAVLREGQFEE 333
+ + P FK L VL E
Sbjct: 250 VPVNFP--------------------------------------FKKYCLDVLEHLDMCE 271
Query: 334 KRASKLTQQEFLYLLSLFNKAGIHF 358
KR+ L + +FL LL FNK GIHF
Sbjct: 272 KRSINLDENDFLKLLLEFNKKGIHF 296
>pdb|3GRR|A Chain A, Crystal Structure Of The Complex Between S-Adenosyl
Homocysteine And Methanocaldococcus Jannaschi Dim1.
pdb|3GRU|A Chain A, Crystal Structure Of The Complex Between Amp And
Methanocaldococcus Jannaschi Dim1
pdb|3GRV|A Chain A, Crystal Structure Of The Complex Between Adenosine And
Methanocaldococcus Jannaschi Dim1
pdb|3GRY|A Chain A, Crystal Structure Of The Complex Between S-Adenosyl
Methionine And Methanocaldococcus Jannaschi Dim1
Length = 295
Score = 141 bits (355), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 89/217 (41%), Positives = 122/217 (56%), Gaps = 22/217 (10%)
Query: 32 KSKGQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEAGKMVIAVELDSRMV 91
K GQ L + V V+ A + DV+LEIG G G LT++L + K V +E+D +
Sbjct: 26 KKLGQCFLIDKNFVNKAVESANLTKDDVVLEIGLGKGILTEELAKNAKKVYVIEIDKSL- 84
Query: 92 LELQRRFQSTPYSNRLK-------VIQGDVLKTDLPYFDI--CVANIPYQISSPLTFKLL 142
PY+N+LK +I GD LK DL D VAN+PYQISSP+TFKL+
Sbjct: 85 ---------EPYANKLKELYNNIEIIWGDALKVDLNKLDFNKVVANLPYQISSPITFKLI 135
Query: 143 FHQPAFRCAIIMFQKEFAMRLVAQPGDKLYCRLSVNTQLHARVSHLLKVGKNNFRPPPKV 202
+ F A++M+Q EFA R+VA G K Y RLSV Q A V + KV + F P PKV
Sbjct: 136 --KRGFDLAVLMYQYEFAKRMVAAAGTKDYGRLSVAVQSRADVEIVAKVPPSAFYPKPKV 193
Query: 203 DSSVVRIEPRKPRPQV-NPVEWDGFLRICFIRKNKTL 238
S++V+I+P K + + N +D FLR F +NK++
Sbjct: 194 YSAIVKIKPNKGKYHIENENFFDDFLRAIFQHRNKSV 230
>pdb|3FYC|A Chain A, Crystal Structure Of Dim1 From The Thermophilic Archeon,
Methanocaldococcus Jannaschi
pdb|3FYC|B Chain B, Crystal Structure Of Dim1 From The Thermophilic Archeon,
Methanocaldococcus Jannaschi
Length = 265
Score = 140 bits (352), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 87/214 (40%), Positives = 121/214 (56%), Gaps = 22/214 (10%)
Query: 35 GQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEAGKMVIAVELDSRMVLEL 94
Q L + V V+ A + DV+LEIG G G LT++L + K V +E+D +
Sbjct: 2 AQCFLIDKNFVNKAVESANLTKDDVVLEIGLGKGILTEELAKNAKKVYVIEIDKSL---- 57
Query: 95 QRRFQSTPYSNRLK-------VIQGDVLKTDLPYFDI--CVANIPYQISSPLTFKLLFHQ 145
PY+N+LK +I GD LK DL D VAN+PYQISSP+TFKL+ +
Sbjct: 58 ------EPYANKLKELYNNIEIIWGDALKVDLNKLDFNKVVANLPYQISSPITFKLI--K 109
Query: 146 PAFRCAIIMFQKEFAMRLVAQPGDKLYCRLSVNTQLHARVSHLLKVGKNNFRPPPKVDSS 205
F A++M+Q EFA R+VA+ G K Y RLSV Q A V + KV + F P PKV S+
Sbjct: 110 RGFDLAVLMYQYEFAKRMVAKEGTKDYGRLSVAVQSRADVEIVAKVPPSAFYPKPKVYSA 169
Query: 206 VVRIEPRKPRPQV-NPVEWDGFLRICFIRKNKTL 238
+V+I+P K + + N +D FLR F +NK++
Sbjct: 170 IVKIKPNKGKYHIENENFFDDFLRAIFQHRNKSV 203
>pdb|3FYD|A Chain A, Crystal Structure Of Dim1 From The Thermophilic Archeon,
Methanocaldococcus Jannaschi
Length = 263
Score = 139 bits (349), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 85/205 (41%), Positives = 117/205 (57%), Gaps = 22/205 (10%)
Query: 44 LVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEAGKMVIAVELDSRMVLELQRRFQSTPY 103
V V+ A + DV+LEIG G G LT++L + K V +E+D + PY
Sbjct: 9 FVNKAVESANLTKDDVVLEIGLGKGILTEELAKNAKKVYVIEIDKSL----------EPY 58
Query: 104 SNRLK-------VIQGDVLKTDLPYFDI--CVANIPYQISSPLTFKLLFHQPAFRCAIIM 154
+N+LK +I GD LK DL D VAN+PYQISSP+TFKL+ + F A++M
Sbjct: 59 ANKLKELYNNIEIIWGDALKVDLNKLDFNKVVANLPYQISSPITFKLI--KRGFDLAVLM 116
Query: 155 FQKEFAMRLVAQPGDKLYCRLSVNTQLHARVSHLLKVGKNNFRPPPKVDSSVVRIEPRKP 214
+Q EFA R+VA G K Y RLSV Q A V + KV + F P PKV S++V+I+P K
Sbjct: 117 YQYEFAKRMVAAAGTKDYGRLSVAVQSRADVEIVAKVPPSAFYPKPKVYSAIVKIKPNKG 176
Query: 215 RPQV-NPVEWDGFLRICFIRKNKTL 238
+ + N +D FLR F +NK++
Sbjct: 177 KYHIENENFFDDFLRAIFQHRNKSV 201
>pdb|3UZU|A Chain A, The Structure Of The Ribosomal Rna Small Subunit
Methyltransferase A From Burkholderia Pseudomallei
Length = 279
Score = 110 bits (275), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 76/222 (34%), Positives = 111/222 (50%), Gaps = 21/222 (9%)
Query: 32 KSKGQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLT----KKLLEAGKMVIAVELD 87
K GQ+ L + ++++IV + + ++EIGPG G LT +L G + AVELD
Sbjct: 18 KRFGQNFLVDHGVIDAIVAAIRPERGERMVEIGPGLGALTGPVIARLATPGSPLHAVELD 77
Query: 88 SRMVLELQRRFQSTPYSNRLKVIQGDVLKTDL---------PYFDICVANIPYQISSPLT 138
++ L++RF L++ GD L D P I + N+PY ISSPL
Sbjct: 78 RDLIGRLEQRF-----GELLELHAGDALTFDFGSIARPGDEPSLRI-IGNLPYNISSPLL 131
Query: 139 FKLLFHQPAFRCAIIMFQKEFAMRLVAQPGDKLYCRLSVNTQLHARVSHLLKVGKNNFRP 198
F L+ P M Q E R+VA+PG K + RLSV Q + L+ V +F+P
Sbjct: 132 FHLMSFAPVVIDQHFMLQNEVVERMVAEPGTKAFSRLSVMLQYRYVMDKLIDVPPESFQP 191
Query: 199 PPKVDSSVVRIEPRKPR--PQVNPVEWDGFLRICFIRKNKTL 238
PPKVDS++VR+ P P P V+P + F ++ K L
Sbjct: 192 PPKVDSAIVRMIPHAPHELPAVDPAVLGEVVTAAFSQRRKML 233
>pdb|3TQS|A Chain A, Structure Of The Dimethyladenosine Transferase (Ksga) From
Coxiella Burnetii
pdb|3TQS|B Chain B, Structure Of The Dimethyladenosine Transferase (Ksga) From
Coxiella Burnetii
pdb|3TQS|C Chain C, Structure Of The Dimethyladenosine Transferase (Ksga) From
Coxiella Burnetii
pdb|3TQS|D Chain D, Structure Of The Dimethyladenosine Transferase (Ksga) From
Coxiella Burnetii
Length = 255
Score = 105 bits (261), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 65/185 (35%), Positives = 91/185 (49%), Gaps = 6/185 (3%)
Query: 32 KSKGQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEAGKMVIAVELDSRMV 91
K GQH L + +++ IV + TD ++EIGPG G LT LL + VE+D +V
Sbjct: 5 KRFGQHFLHDSFVLQKIVSAIHPQKTDTLVEIGPGRGALTDYLLTECDNLALVEIDRDLV 64
Query: 92 LELQRRFQS----TPYSNRLKVIQGDVLKTDLPYFDICVANIPYQISSPLTFKLLFHQPA 147
LQ+++ T Y N +KTD P V N+PY IS+PL F L
Sbjct: 65 AFLQKKYNQQKNITIYQNDALQFDFSSVKTDKPL--RVVGNLPYNISTPLLFHLFSQIHC 122
Query: 148 FRCAIIMFQKEFAMRLVAQPGDKLYCRLSVNTQLHARVSHLLKVGKNNFRPPPKVDSSVV 207
QKE R+ A+ G Y RLSV Q ++L V F PPP+V+S+++
Sbjct: 123 IEDXHFXLQKEVVRRITAEVGSHDYGRLSVXAQYFCDNTYLFTVSPQAFTPPPRVESAII 182
Query: 208 RIEPR 212
R+ PR
Sbjct: 183 RLIPR 187
>pdb|3TPZ|A Chain A, 2.1 Angstrom Crystal Structure Of The L114p Mutant Of E.
Coli Ksga
pdb|3TPZ|B Chain B, 2.1 Angstrom Crystal Structure Of The L114p Mutant Of E.
Coli Ksga
Length = 273
Score = 101 bits (252), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 67/194 (34%), Positives = 94/194 (48%), Gaps = 12/194 (6%)
Query: 32 KSKGQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEAGKMVIAVELDSRMV 91
K GQ+ L + +++SIV + ++EIGPG LT+ + E + +ELD
Sbjct: 13 KRFGQNFLNDQFVIDSIVSAINPQKGQAMVEIGPGLAALTEPVGERLDQLTVIELDR--- 69
Query: 92 LELQRRFQSTPY-SNRLKVIQGDVLKTDLPYFDI-------CVANIPYQISSPLTFKLLF 143
+L R Q+ P+ +L + Q D + + N PY IS+PL F L
Sbjct: 70 -DLAARLQTHPFLGPKLTIYQQDAMTFNFGELAEKMGQPLRVFGNPPYNISTPLMFHLFS 128
Query: 144 HQPAFRCAIIMFQKEFAMRLVAQPGDKLYCRLSVNTQLHARVSHLLKVGKNNFRPPPKVD 203
+ A M QKE RLVA P K Y RLSV Q + V +L+V + F PPPKVD
Sbjct: 129 YTDAIADMHFMLQKEVVNRLVAGPNSKAYGRLSVMAQYYCNVIPVLEVPPSAFTPPPKVD 188
Query: 204 SSVVRIEPRKPRPQ 217
S+VVR+ P P
Sbjct: 189 SAVVRLVPHATMPH 202
>pdb|1QYR|A Chain A, 2.1 Angstrom Crystal Structure Of Ksga: A Universally
Conserved Adenosine Dimethyltransferase
pdb|1QYR|B Chain B, 2.1 Angstrom Crystal Structure Of Ksga: A Universally
Conserved Adenosine Dimethyltransferase
pdb|4ADV|V Chain V, Structure Of The E. Coli Methyltransferase Ksga Bound To
The E. Coli 30s Ribosomal Subunit
Length = 252
Score = 100 bits (250), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 65/190 (34%), Positives = 93/190 (48%), Gaps = 12/190 (6%)
Query: 36 QHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEAGKMVIAVELDSRMVLELQ 95
Q+ L + +++SIV + ++EIGPG LT+ + E + +ELD +L
Sbjct: 1 QNFLNDQFVIDSIVSAINPQKGQAMVEIGPGLAALTEPVGERLDQLTVIELDR----DLA 56
Query: 96 RRFQSTPY-SNRLKVIQGDVLKTDLPYFDI-------CVANIPYQISSPLTFKLLFHQPA 147
R Q+ P+ +L + Q D + + N+PY IS+PL F L + A
Sbjct: 57 ARLQTHPFLGPKLTIYQQDAMTFNFGELAEKMGQPLRVFGNLPYNISTPLMFHLFSYTDA 116
Query: 148 FRCAIIMFQKEFAMRLVAQPGDKLYCRLSVNTQLHARVSHLLKVGKNNFRPPPKVDSSVV 207
M QKE RLVA P K Y RLSV Q + V +L+V + F PPPKVDS+VV
Sbjct: 117 IADMHFMLQKEVVNRLVAGPNSKAYGRLSVMAQYYCNVIPVLEVPPSAFTPPPKVDSAVV 176
Query: 208 RIEPRKPRPQ 217
R+ P P
Sbjct: 177 RLVPHATMPH 186
>pdb|3FUU|A Chain A, T. Thermophilus 16s Rrna A1518 And A1519 Methyltransferase
(Ksga) In Complex With Adenosine In Space Group P212121
pdb|3FUV|A Chain A, Apo-Form Of T. Thermophilus 16s Rrna A1518 And A1519
Methyltransferase (Ksga) In Space Group P43212
pdb|3FUV|B Chain B, Apo-Form Of T. Thermophilus 16s Rrna A1518 And A1519
Methyltransferase (Ksga) In Space Group P43212
pdb|3FUV|C Chain C, Apo-Form Of T. Thermophilus 16s Rrna A1518 And A1519
Methyltransferase (Ksga) In Space Group P43212
pdb|3FUW|A Chain A, T. Thermophilus 16s Rrna A1518 And A1519 Methyltransferase
(Ksga) In Complex With 5'-Methylthioadenosine In Space
Group P212121
pdb|3FUX|A Chain A, T. Thermophilus 16s Rrna A1518 And A1519 Methyltransferase
(Ksga) In Complex With 5'-Methylthioadenosine In Space
Group P212121
pdb|3FUX|B Chain B, T. Thermophilus 16s Rrna A1518 And A1519 Methyltransferase
(Ksga) In Complex With 5'-Methylthioadenosine In Space
Group P212121
pdb|3FUX|C Chain C, T. Thermophilus 16s Rrna A1518 And A1519 Methyltransferase
(Ksga) In Complex With 5'-Methylthioadenosine In Space
Group P212121
Length = 271
Score = 94.0 bits (232), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 64/183 (34%), Positives = 94/183 (51%), Gaps = 9/183 (4%)
Query: 32 KSKGQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEAGKMVIAVELDSRMV 91
K GQ+ L + + IV+ A T + E+GPG G LT+ LLEAG V A+E D R+
Sbjct: 23 KRFGQNFLVSEAHLRRIVE-AARPFTGPVFEVGPGLGALTRALLEAGAEVTAIEKDLRLR 81
Query: 92 LELQRRFQSTPYSNRLKVIQGDVL---KTDLPYFDICVANIPYQISSPLTFKLLFHQPAF 148
L+ P ++++ D L ++P + VAN+PY I++PL +LL F
Sbjct: 82 PVLEETLSGLP----VRLVFQDALLYPWEEVPQGSLLVANLPYHIATPLVTRLL-KTGRF 136
Query: 149 RCAIIMFQKEFAMRLVAQPGDKLYCRLSVNTQLHARVSHLLKVGKNNFRPPPKVDSSVVR 208
+ + QKE A R+ A+P Y L++ HA L + F PPPKV SS+VR
Sbjct: 137 ARLVFLVQKEVAERMTARPKTPAYGVLTLRVAHHAVAERLFDLPPGAFFPPPKVWSSLVR 196
Query: 209 IEP 211
+ P
Sbjct: 197 LTP 199
>pdb|3FUT|A Chain A, Apo-Form Of T. Thermophilus 16s Rrna A1518 And A1519
Methyltransferase (Ksga) In Space Group P21212
pdb|3FUT|B Chain B, Apo-Form Of T. Thermophilus 16s Rrna A1518 And A1519
Methyltransferase (Ksga) In Space Group P21212
Length = 271
Score = 92.8 bits (229), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 64/183 (34%), Positives = 93/183 (50%), Gaps = 9/183 (4%)
Query: 32 KSKGQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEAGKMVIAVELDSRMV 91
K GQ+ L + + IV+ A T + E+GPG G LT+ LLEAG V A+E D R+
Sbjct: 23 KRFGQNFLVSEAHLRRIVE-AARPFTGPVFEVGPGLGALTRALLEAGAEVTAIEKDLRLR 81
Query: 92 LELQRRFQSTPYSNRLKVIQGDVL---KTDLPYFDICVANIPYQISSPLTFKLLFHQPAF 148
L+ P ++++ D L ++P + VAN+PY I++PL +LL F
Sbjct: 82 PVLEETLSGLP----VRLVFQDALLYPWEEVPQGSLLVANLPYHIATPLVTRLL-KTGRF 136
Query: 149 RCAIIMFQKEFAMRLVAQPGDKLYCRLSVNTQLHARVSHLLKVGKNNFRPPPKVDSSVVR 208
+ + QKE A R A+P Y L++ HA L + F PPPKV SS+VR
Sbjct: 137 ARLVFLVQKEVAERXTARPKTPAYGVLTLRVAHHAVAERLFDLPPGAFFPPPKVWSSLVR 196
Query: 209 IEP 211
+ P
Sbjct: 197 LTP 199
>pdb|3FTC|A Chain A, Crystal Structure Of A. Aeolicus Ksga At 1.72-Angstrom
Resolution
pdb|3FTD|A Chain A, Crystal Structure Of A. Aeolicus Ksga At 1.44-Angstrom
Resolution
pdb|3FTE|A Chain A, Crystal Structure Of A. Aeolicus Ksga In Complex With Rna
pdb|3FTF|A Chain A, Crystal Structure Of A. Aeolicus Ksga In Complex With Rna
And Sah
Length = 249
Score = 73.2 bits (178), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 66/217 (30%), Positives = 110/217 (50%), Gaps = 16/217 (7%)
Query: 28 ISFHKSKGQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEAG-KMVIAVEL 86
+ KS GQH+L + +++ I ++ I+ + ++E+G GTGNLTK LL+ K + +EL
Sbjct: 3 VRLKKSFGQHLLVSEGVLKKIAEELNIEEGNTVVEVGGGTGNLTKVLLQHPLKKLYVIEL 62
Query: 87 DSRMVLELQRRFQSTPYSNRLKVIQGDVLKTDLPYFDI-----CVANIPYQISSPLTFKL 141
D MV L+ + RL+VI D K P+ + V N+PY ++S +
Sbjct: 63 DREMVENLK-----SIGDERLEVINEDASK--FPFCSLGKELKVVGNLPYNVASLIIENT 115
Query: 142 LFHQPAFRCAIIMFQKEFAMRLVAQPGDKLYCRLSVNTQLHARVSHLLKVGKNNFRPPPK 201
++++ A+ M QKE A +L G K LSV + V++++ V F PPPK
Sbjct: 116 VYNKDCVPLAVFMVQKEVAEKL---QGKKDTGWLSVFVRTFYDVNYVMTVPPRFFVPPPK 172
Query: 202 VDSSVVRIEPRKPRPQVNPVEWDGFLRICFIRKNKTL 238
V S+V+++ + P + + FL F + K L
Sbjct: 173 VQSAVIKLVKNEKFPVKDLKNYKKFLTKIFQNRRKVL 209
>pdb|3R9X|B Chain B, Crystal Structure Of Era In Complex With Mggdpnp,
Nucleotides 1506- 1542 Of 16s Ribosomal Rna, And Ksga
Length = 248
Score = 73.2 bits (178), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 66/217 (30%), Positives = 110/217 (50%), Gaps = 16/217 (7%)
Query: 28 ISFHKSKGQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEAG-KMVIAVEL 86
+ KS GQH+L + +++ I ++ I+ + ++E+G GTGNLTK LL+ K + +EL
Sbjct: 2 VRLKKSFGQHLLVSEGVLKKIAEELNIEEGNTVVEVGGGTGNLTKVLLQHPLKKLYVIEL 61
Query: 87 DSRMVLELQRRFQSTPYSNRLKVIQGDVLKTDLPYFDI-----CVANIPYQISSPLTFKL 141
D MV L+ + RL+VI D K P+ + V N+PY ++S +
Sbjct: 62 DREMVENLK-----SIGDERLEVINEDASK--FPFCSLGKELKVVGNLPYNVASLIIENT 114
Query: 142 LFHQPAFRCAIIMFQKEFAMRLVAQPGDKLYCRLSVNTQLHARVSHLLKVGKNNFRPPPK 201
++++ A+ M QKE A +L G K LSV + V++++ V F PPPK
Sbjct: 115 VYNKDCVPLAVFMVQKEVAEKL---QGKKDTGWLSVFVRTFYDVNYVMTVPPRFFVPPPK 171
Query: 202 VDSSVVRIEPRKPRPQVNPVEWDGFLRICFIRKNKTL 238
V S+V+++ + P + + FL F + K L
Sbjct: 172 VQSAVIKLVKNEKFPVKDLKNYKKFLTKIFQNRRKVL 208
>pdb|1YUB|A Chain A, Solution Structure Of An Rrna Methyltransferase (Ermam)
That Confers Macrolide-Lincosamide-Streptogramin
Antibiotic Resistance, Nmr, Minimized Average Structure
Length = 245
Score = 70.5 bits (171), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 53/180 (29%), Positives = 92/180 (51%), Gaps = 17/180 (9%)
Query: 35 GQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEAGKMVIAVELDSRMVLEL 94
Q+ L + ++ I+++ +K TD + EIG G G+LT KL + K V ++ELDS +
Sbjct: 8 SQNFLTSEKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKISKQVTSIELDSHL---F 64
Query: 95 QRRFQSTPYSNRLKVIQGDVLKTDLP---YFDICVANIPYQISSPLTFKLLFHQPAFRCA 151
+ + R+ +I D+L+ P + I V NIPY +S+ + K++F A
Sbjct: 65 NLSSEKLKLNTRVTLIHQDILQFQFPNKQRYKI-VGNIPYHLSTQIIKKVVFESRASDIY 123
Query: 152 IIMFQKEFAMRLVAQPGDKLYCRLSVNTQLHARVS--HLLKVGKNNFRPPPKVDSSVVRI 209
+I+ ++ F R L ++ LH +VS LLK+ F P PKV+S ++++
Sbjct: 124 LIV-EEGFYKR-------TLDIHRTLGLLLHTQVSIQQLLKLPAECFHPKPKVNSVLIKL 175
>pdb|2ERC|A Chain A, Crystal Structure Of Ermc' A Rrna-Methyl Transferase
pdb|2ERC|B Chain B, Crystal Structure Of Ermc' A Rrna-Methyl Transferase
pdb|1QAM|A Chain A, The Structure Of The Rrna Methyltransferase Ermc':
Implications For The Reaction Mechanism
pdb|1QAN|A Chain A, The Structure Of The Rrna Methyltransferase Ermc':
Implications For The Reaction Mechanism
pdb|1QAO|A Chain A, The Structure Of The Rrna Methyltransferase Ermc':
Implications For The Reaction Mechanism
pdb|1QAQ|A Chain A, The Structure Of The Rrna Methyltransferase Ermc':
Implications For The Reaction Mechanism
Length = 244
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 47/174 (27%), Positives = 84/174 (48%), Gaps = 13/174 (7%)
Query: 45 VESIVQKAGIKSTDVILEIGPGTGNLTKKLLEAGKMVIAVELDSRMVLELQRRFQSTPYS 104
++ I+ + D I EIG G G+ T +L++ V A+E+D ++ + +
Sbjct: 19 IDKIMTNIRLNEHDNIFEIGSGKGHFTLELVQRCNFVTAIEIDHKLCKTTENKLVD---H 75
Query: 105 NRLKVIQGDVLKTDLP---YFDICVANIPYQISSPLTFKLLFHQPAFRCAIIMFQKEFAM 161
+ +V+ D+L+ P + I NIPY IS+ + K++F A +I+ + FA
Sbjct: 76 DNFQVLNKDILQFKFPKNQSYKI-FGNIPYNISTDIIRKIVFDSIADEIYLIV-EYGFAK 133
Query: 162 RLVAQPGDKLYCRLSVNTQLHARVSHLLKVGKNNFRPPPKVDSSVVRIEPRKPR 215
RL+ L++ +S L V + F P PKV+SS++R+ +K R
Sbjct: 134 RLLNTKRS-----LALFLMAEVDISILSMVPREYFHPKPKVNSSLIRLNRKKSR 182
>pdb|3HNR|A Chain A, Crystal Structure Of A Probable Methyltransferase
Bt9727_4108 From Bacillus Thuringiensis Subsp. Northeast
Structural Genomics Consortium Target Id Bur219
Length = 220
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 35/75 (46%), Gaps = 5/75 (6%)
Query: 46 ESIVQKAGIKSTDVILEIGPGTGNLTKKLLEAGKMVIAVELDSRMVLELQRRFQSTPYSN 105
E I++ KS +LE G GTGNLT KLL AG+ V +E M R
Sbjct: 35 EDILEDVVNKSFGNVLEFGVGTGNLTNKLLLAGRTVYGIEPSREM-----RMIAKEKLPK 89
Query: 106 RLKVIQGDVLKTDLP 120
+ +GD L ++P
Sbjct: 90 EFSITEGDFLSFEVP 104
>pdb|2ZUL|A Chain A, Crystal Structure Of Thermus Thermophilus 16s Rrna
Methyltransferase Rsmc (Ttha0533) In Complex With
Cofactor S-Adenosyl-L-Methionine
pdb|2ZWV|A Chain A, Crystal Structure Of Thermus Thermophilus 16s Rrna
Methyltransferase Rsmc (Ttha0533)
Length = 375
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 50/97 (51%), Gaps = 6/97 (6%)
Query: 43 LLVESIVQKAGIKSTDV--ILEIGPGTGNLTKKLLEAGKMVIAVELDSRMVLELQRRFQS 100
LL+E++ ++ G + +L++G G G LT L G V+ VE D VL LQ+ ++
Sbjct: 218 LLLEALQERLGPEGVRGRQVLDLGAGYGALTLPLARMGAEVVGVEDDLASVLSLQKGLEA 277
Query: 101 TPYSNRLKVIQGDVLK--TDLPYFDICVANIPYQISS 135
+ + + + DV + T+ FDI V N P+ +
Sbjct: 278 N--ALKAQALHSDVDEALTEEARFDIIVTNPPFHVGG 312
>pdb|3DMF|A Chain A, T. Thermophilus 16s Rrna N2 G1207 Methyltransferase (Rsmc)
In Complex With Adomet
pdb|3DMG|A Chain A, T. Thermophilus 16s Rrna N2 G1207 Methyltransferase (Rsmc)
In Complex With Adohcy
pdb|3DMH|A Chain A, T. Thermophilus 16s Rrna N2 G1207 Methyltransferase (Rsmc)
In Complex With Adomet And Guanosine
Length = 381
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 50/97 (51%), Gaps = 6/97 (6%)
Query: 43 LLVESIVQKAGIKSTDV--ILEIGPGTGNLTKKLLEAGKMVIAVELDSRMVLELQRRFQS 100
LL+E++ ++ G + +L++G G G LT L G V+ VE D VL LQ+ ++
Sbjct: 218 LLLEALQERLGPEGVRGRQVLDLGAGYGALTLPLARMGAEVVGVEDDLASVLSLQKGLEA 277
Query: 101 TPYSNRLKVIQGDVLK--TDLPYFDICVANIPYQISS 135
+ + + + DV + T+ FDI V N P+ +
Sbjct: 278 N--ALKAQALHSDVDEALTEEARFDIIVTNPPFHVGG 312
>pdb|3DH0|A Chain A, Crystal Structure Of A Sam Dependent Methyltransferase
From Aquifex Aeolicus
pdb|3DH0|B Chain B, Crystal Structure Of A Sam Dependent Methyltransferase
From Aquifex Aeolicus
Length = 219
Score = 36.2 bits (82), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 46/169 (27%), Positives = 79/169 (46%), Gaps = 27/169 (15%)
Query: 46 ESIVQKAGIKSTDVILEIGPGTG----NLTKKLLEAGKMVIAVELDSRMVLELQRRFQST 101
E ++++ G+K +L++G G G L+K + E GK V A+++ MV +
Sbjct: 27 EKVLKEFGLKEGMTVLDVGTGAGFYLPYLSKMVGEKGK-VYAIDVQEEMVNYAWEKV--- 82
Query: 102 PYSNRLKVIQGDVLKTD---LPYFD-----ICVANIPYQISSPLTFKLLFH---QPAFRC 150
N+L + +VLK++ +P D I +A +++S PL F +P
Sbjct: 83 ---NKLGLKNVEVLKSEENKIPLPDNTVDFIFMAFTFHELSEPLKFLEELKRVAKPFAYL 139
Query: 151 AIIMFQKEFAMRLVAQPGDKLYCRLSVNTQLH---ARVSHLLKVGKNNF 196
AII ++KE R P +++Y V L RV +++VGK F
Sbjct: 140 AIIDWKKE--ERDKGPPPEEVYSEWEVGLILEDAGIRVGRVVEVGKYCF 186
>pdb|3G2M|A Chain A, Crystal Structure Of The Glycopeptide N-Methyltransferase
Mtfa
pdb|3G2M|B Chain B, Crystal Structure Of The Glycopeptide N-Methyltransferase
Mtfa
Length = 299
Score = 35.8 bits (81), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Query: 60 ILEIGPGTGNLTKKLLEAGKMVIAVELDSRMVLELQRRFQSTPYS--NRLKVIQGD 113
+LE+ G G LT L+ G V A+EL + ++ ++R P +R ++QGD
Sbjct: 86 VLELAAGXGRLTFPFLDLGWEVTALELSTSVLAAFRKRLAEAPADVRDRCTLVQGD 141
>pdb|3G2O|A Chain A, Crystal Structure Of The Glycopeptide N-methyltransferase
Mtfa Complexed With (s)-adenosyl-l-methionine (sam)
pdb|3G2O|B Chain B, Crystal Structure Of The Glycopeptide N-methyltransferase
Mtfa Complexed With (s)-adenosyl-l-methionine (sam)
pdb|3G2P|A Chain A, Crystal Structure Of The Glycopeptide N-Methyltransferase
Mtfa Complexed With (S)-Adenosyl-L-Homocysteine (Sah)
pdb|3G2P|B Chain B, Crystal Structure Of The Glycopeptide N-Methyltransferase
Mtfa Complexed With (S)-Adenosyl-L-Homocysteine (Sah)
pdb|3G2Q|A Chain A, Crystal Structure Of The Glycopeptide N-Methyltransferase
Mtfa Complexed With Sinefungin
pdb|3G2Q|B Chain B, Crystal Structure Of The Glycopeptide N-Methyltransferase
Mtfa Complexed With Sinefungin
Length = 299
Score = 35.8 bits (81), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Query: 60 ILEIGPGTGNLTKKLLEAGKMVIAVELDSRMVLELQRRFQSTPYS--NRLKVIQGDV 114
+LE+ G G LT L+ G V A+EL + ++ ++R P +R ++QGD+
Sbjct: 86 VLELAAGMGRLTFPFLDLGWEVTALELSTSVLAAFRKRLAEAPADVRDRCTLVQGDM 142
>pdb|1Y8C|A Chain A, Crystal Structure Of A S-Adenosylmethionine-Dependent
Methyltransferase From Clostridium Acetobutylicum Atcc
824
Length = 246
Score = 33.1 bits (74), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
Query: 42 PLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEAGKMVIAVELDSRMVLELQRRFQS 100
++E V+ + D L++ GTGNLT+ L K AV+L + E + +F+S
Sbjct: 25 DFIIEKCVENNLV--FDDYLDLACGTGNLTENLCPKFKNTWAVDLSQEXLSEAENKFRS 81
>pdb|1F3L|A Chain A, Crystal Structure Of The Conserved Core Of Protein
Arginine Methyltransferase Prmt3
Length = 321
Score = 32.3 bits (72), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 56/118 (47%), Gaps = 11/118 (9%)
Query: 31 HKSKGQHILKNPLLVES----IVQKAGIKSTDVILEIGPGTGNLTKKLLEAG-KMVIAVE 85
H + +LK+ + ES I Q I V+L++G GTG L+ +AG K VIAV+
Sbjct: 16 HYGIHEEMLKDKVRTESYRDFIYQNPHIFKDKVVLDVGCGTGILSMFAAKAGAKKVIAVD 75
Query: 86 LDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTDLPYFDICVANIPYQISSPLTFKLLF 143
S ++ + + + + +I+G + + LP V + IS + + LLF
Sbjct: 76 -QSEILYQAMDIIRLNKLEDTIVLIKGKIEEVSLP-----VEKVDVIISEWMGYFLLF 127
>pdb|3NJR|A Chain A, Crystal Structure Of C-Terminal Domain Of Precorrin-6y
C5,15- Methyltransferase From Rhodobacter Capsulatus
pdb|3NJR|B Chain B, Crystal Structure Of C-Terminal Domain Of Precorrin-6y
C5,15- Methyltransferase From Rhodobacter Capsulatus
Length = 204
Score = 32.0 bits (71), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 20/86 (23%), Positives = 43/86 (50%), Gaps = 3/86 (3%)
Query: 37 HILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEAGKMVIAVELDSRMVLELQR 96
I K+P+ ++ A + +++ +IG G+G+++ + AG I +E + + +Q+
Sbjct: 37 QITKSPMRALTLAALA-PRRGELLWDIGGGSGSVSVEWCLAGGRAITIEPRADRIENIQK 95
Query: 97 RFQSTPYSNRLKVIQGDVLK--TDLP 120
+ S R++ +QG DLP
Sbjct: 96 NIDTYGLSPRMRAVQGTAPAALADLP 121
>pdb|1G6Q|1 Chain 1, Crystal Structure Of Yeast Arginine Methyltransferase,
Hmt1
pdb|1G6Q|2 Chain 2, Crystal Structure Of Yeast Arginine Methyltransferase,
Hmt1
pdb|1G6Q|3 Chain 3, Crystal Structure Of Yeast Arginine Methyltransferase,
Hmt1
pdb|1G6Q|4 Chain 4, Crystal Structure Of Yeast Arginine Methyltransferase,
Hmt1
pdb|1G6Q|5 Chain 5, Crystal Structure Of Yeast Arginine Methyltransferase,
Hmt1
pdb|1G6Q|6 Chain 6, Crystal Structure Of Yeast Arginine Methyltransferase,
Hmt1
Length = 328
Score = 31.6 bits (70), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 19/77 (24%), Positives = 44/77 (57%), Gaps = 4/77 (5%)
Query: 47 SIVQKAGIKSTDVILEIGPGTGNLTKKLLEAG-KMVIAVELDSRMVLELQRRF-QSTPYS 104
+I+Q + ++L++G GTG L+ + G K VI V++ S ++E+ + + +S
Sbjct: 29 AIIQNKDLFKDKIVLDVGCGTGILSMFAAKHGAKHVIGVDMSS--IIEMAKELVELNGFS 86
Query: 105 NRLKVIQGDVLKTDLPY 121
+++ +++G + LP+
Sbjct: 87 DKITLLRGKLEDVHLPF 103
>pdb|4GEK|A Chain A, Crystal Structure Of Wild-Type Cmoa From E.Coli
pdb|4GEK|G Chain G, Crystal Structure Of Wild-Type Cmoa From E.Coli
Length = 261
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 26/111 (23%), Positives = 49/111 (44%), Gaps = 11/111 (9%)
Query: 43 LLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEAGKMVIAVELDSRMVLELQRRFQSTP 102
+L E VQ G + D+ +G T ++ + + +IA++ M+ +R +
Sbjct: 62 MLAERFVQP-GTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYK 120
Query: 103 YSNRLKVIQGDVLKTDLPYFDICVANIPYQISSPLTFKLLFHQPAFRCAII 153
+ VI+GD+ DI + N + L F L F +P+ R A++
Sbjct: 121 APTPVDVIEGDIR-------DIAIENASMVV---LNFTLQFLEPSERQALL 161
>pdb|2FYT|A Chain A, Human Hmt1 Hnrnp Methyltransferase-Like 3 (S. Cerevisiae)
Protein
pdb|3SMQ|A Chain A, Crystal Structure Of Protein Arginine Methyltransferase 3
pdb|4HSG|A Chain A, Crystal Structure Of Human Prmt3 In Complex With An
Allosteric Inhibitor (Prmt3- Ktd)
Length = 340
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 55/118 (46%), Gaps = 11/118 (9%)
Query: 31 HKSKGQHILKNPLLVES----IVQKAGIKSTDVILEIGPGTGNLTKKLLEAG-KMVIAVE 85
H + +LK+ + ES I Q I V+L++G GTG L+ +AG K V+ V+
Sbjct: 35 HYGIHEEMLKDKIRTESYRDFIYQNPHIFKDKVVLDVGCGTGILSMFAAKAGAKKVLGVD 94
Query: 86 LDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTDLPYFDICVANIPYQISSPLTFKLLF 143
S ++ + + + + +I+G + + LP V + IS + + LLF
Sbjct: 95 -QSEILYQAMDIIRLNKLEDTITLIKGKIEEVHLP-----VEKVDVIISEWMGYFLLF 146
>pdb|3H2B|A Chain A, Crystal Structure Of The Sam-Dependent Methyltransferase
Cg3271 From Corynebacterium Glutamicum In Complex With
S- Adenosyl-L-Homocysteine And Pyrophosphate. Northeast
Structural Genomics Consortium Target Cgr113a
pdb|3H2B|B Chain B, Crystal Structure Of The Sam-Dependent Methyltransferase
Cg3271 From Corynebacterium Glutamicum In Complex With
S- Adenosyl-L-Homocysteine And Pyrophosphate. Northeast
Structural Genomics Consortium Target Cgr113a
Length = 203
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Query: 59 VILEIGPGTGNLTKKLLEAGKMVIAVELDSRMVLELQRR 97
VIL++G GTG T L G + +E +R+V EL R+
Sbjct: 44 VILDVGSGTGRWTGHLASLGHQIEGLEPATRLV-ELARQ 81
>pdb|2IP2|A Chain A, Structure Of The Pyocyanin Biosynthetic Protein Phzm
pdb|2IP2|B Chain B, Structure Of The Pyocyanin Biosynthetic Protein Phzm
Length = 334
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Query: 61 LEIGPGTGNLTKKLLEAGKMVIAVELDSRMVLELQR-RFQSTPYSNRLKVIQGDVLK 116
+++G G+G LTK +L+A V LD L + R S R+ ++ GD+L+
Sbjct: 172 VDVGGGSGELTKAILQAEPSARGVMLDREGSLGVARDNLSSLLAGERVSLVGGDMLQ 228
>pdb|3B3J|A Chain A, The 2.55 A Crystal Structure Of The Apo Catalytic Domain
Of Coactivator-Associated Arginine Methyl Transferase
I(Carm1:28-507, Residues 28-146 And 479-507 Not Ordered)
Length = 480
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 38/84 (45%), Gaps = 6/84 (7%)
Query: 59 VILEIGPGTGNLTKKLLEAGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTD 118
++L++G G+G L+ +AG I S M + +S ++R+ VI G V +
Sbjct: 161 IVLDVGCGSGILSFFAAQAGARKIYAVEASTMAQHAEVLVKSNNLTDRIVVIPGKVEEVS 220
Query: 119 LPYFDICVANIPYQISSPLTFKLL 142
LP + IS P+ + L
Sbjct: 221 LP------EQVDIIISEPMGYMLF 238
>pdb|2YQZ|A Chain A, Crystal Structure Of Hypothetical Methyltransferase
Ttha0223 From Thermus Thermophilus Hb8 Complexed With
S-adenosylmethionine
pdb|2YQZ|B Chain B, Crystal Structure Of Hypothetical Methyltransferase
Ttha0223 From Thermus Thermophilus Hb8 Complexed With
S-adenosylmethionine
pdb|2YR0|A Chain A, Crystal Structure Of Hypothetical Methyltransferase
Ttha0223 From Thermus Thermophilus Hb8
pdb|2YR0|B Chain B, Crystal Structure Of Hypothetical Methyltransferase
Ttha0223 From Thermus Thermophilus Hb8
Length = 263
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
Query: 59 VILEIGPGTGNLTKKLLEAGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTD 118
V LE+G GTG + L+ G IA++ D+ + +++ +++V+Q D
Sbjct: 42 VFLELGVGTGRIALPLIARGYRYIALDADAAXLEVFRQKIAGV--DRKVQVVQADARAIP 99
Query: 119 LP 120
LP
Sbjct: 100 LP 101
>pdb|3B3F|A Chain A, The 2.2 A Crystal Structure Of The Catalytic Domain Of
Coactivator- Associated Arginine Methyl Transferase
I(Carm1,142-478), In Complex With S-Adenosyl
Homocysteine
pdb|3B3F|B Chain B, The 2.2 A Crystal Structure Of The Catalytic Domain Of
Coactivator- Associated Arginine Methyl Transferase
I(Carm1,142-478), In Complex With S-Adenosyl
Homocysteine
pdb|3B3F|C Chain C, The 2.2 A Crystal Structure Of The Catalytic Domain Of
Coactivator- Associated Arginine Methyl Transferase
I(Carm1,142-478), In Complex With S-Adenosyl
Homocysteine
pdb|3B3F|D Chain D, The 2.2 A Crystal Structure Of The Catalytic Domain Of
Coactivator- Associated Arginine Methyl Transferase
I(Carm1,142-478), In Complex With S-Adenosyl
Homocysteine
pdb|3B3G|A Chain A, The 2.4 A Crystal Structure Of The Apo Catalytic Domain Of
Coactivator-associated Arginine Methyl Transferase
I(carm1,140-480).
pdb|3B3G|B Chain B, The 2.4 A Crystal Structure Of The Apo Catalytic Domain Of
Coactivator-associated Arginine Methyl Transferase
I(carm1,140-480)
Length = 341
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 42/85 (49%), Gaps = 8/85 (9%)
Query: 59 VILEIGPGTGNLTKKLLEAG-KMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKT 117
++L++G G+G L+ +AG + + AVE S M + +S ++R+ VI G V +
Sbjct: 49 IVLDVGCGSGILSFFAAQAGARKIYAVEA-STMAQHAEVLVKSNNLTDRIVVIPGKVEEV 107
Query: 118 DLPYFDICVANIPYQISSPLTFKLL 142
LP + IS P+ + L
Sbjct: 108 SLP------EQVDIIISEPMGYMLF 126
>pdb|3CCF|A Chain A, Crystal Structure Of Putative Methyltransferase
(Yp_321342.1) From Anabaena Variabilis Atcc 29413 At
1.90 A Resolution
pdb|3CCF|B Chain B, Crystal Structure Of Putative Methyltransferase
(Yp_321342.1) From Anabaena Variabilis Atcc 29413 At
1.90 A Resolution
Length = 279
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 25/40 (62%)
Query: 46 ESIVQKAGIKSTDVILEIGPGTGNLTKKLLEAGKMVIAVE 85
E ++Q + + IL++G GTG LT+K+ ++G V+ +
Sbjct: 47 EDLLQLLNPQPGEFILDLGCGTGQLTEKIAQSGAEVLGTD 86
>pdb|2Y1W|A Chain A, Crystal Structure Of Coactivator Associated Arginine
Methyltransferase 1 (Carm1) In Complex With Sinefungin
And Indole Inhibitor
pdb|2Y1W|B Chain B, Crystal Structure Of Coactivator Associated Arginine
Methyltransferase 1 (Carm1) In Complex With Sinefungin
And Indole Inhibitor
pdb|2Y1W|C Chain C, Crystal Structure Of Coactivator Associated Arginine
Methyltransferase 1 (Carm1) In Complex With Sinefungin
And Indole Inhibitor
pdb|2Y1W|D Chain D, Crystal Structure Of Coactivator Associated Arginine
Methyltransferase 1 (Carm1) In Complex With Sinefungin
And Indole Inhibitor
pdb|2Y1X|A Chain A, Crystal Structure Of Coactivator Associated Arginine
Methyltransferase 1 (Carm1) In Complex With Sinefungin
And Indole Inhibitor
pdb|2Y1X|B Chain B, Crystal Structure Of Coactivator Associated Arginine
Methyltransferase 1 (Carm1) In Complex With Sinefungin
And Indole Inhibitor
pdb|2Y1X|C Chain C, Crystal Structure Of Coactivator Associated Arginine
Methyltransferase 1 (Carm1) In Complex With Sinefungin
And Indole Inhibitor
pdb|2Y1X|D Chain D, Crystal Structure Of Coactivator Associated Arginine
Methyltransferase 1 (Carm1) In Complex With Sinefungin
And Indole Inhibitor
Length = 348
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 42/85 (49%), Gaps = 8/85 (9%)
Query: 59 VILEIGPGTGNLTKKLLEAG-KMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKT 117
++L++G G+G L+ +AG + + AVE S M + +S ++R+ VI G V +
Sbjct: 53 IVLDVGCGSGILSFFAAQAGARKIYAVEA-STMAQHAEVLVKSNNLTDRIVVIPGKVEEV 111
Query: 118 DLPYFDICVANIPYQISSPLTFKLL 142
LP + IS P+ + L
Sbjct: 112 SLP------EQVDIIISEPMGYMLF 130
>pdb|4IKP|A Chain A, Crystal Structure Of Coactivator-associated Arginine
Methyltransferase 1
pdb|4IKP|B Chain B, Crystal Structure Of Coactivator-associated Arginine
Methyltransferase 1
pdb|4IKP|C Chain C, Crystal Structure Of Coactivator-associated Arginine
Methyltransferase 1
pdb|4IKP|D Chain D, Crystal Structure Of Coactivator-associated Arginine
Methyltransferase 1
Length = 341
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 42/85 (49%), Gaps = 8/85 (9%)
Query: 59 VILEIGPGTGNLTKKLLEAG-KMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKT 117
++L++G G+G L+ +AG + + AVE S M + +S ++R+ VI G V +
Sbjct: 48 IVLDVGCGSGILSFFAAQAGARKIYAVEA-STMAQHAEVLVKSNNLTDRIVVIPGKVEEV 106
Query: 118 DLPYFDICVANIPYQISSPLTFKLL 142
LP + IS P+ + L
Sbjct: 107 SLP------EQVDIIISEPMGYMLF 125
>pdb|2V74|B Chain B, Crystal Structure Of Coactivator-Associated Arginine
Methyltransferase 1 (Carm1), In Complex With S-Adenosyl-
Homocysteine
pdb|2V74|D Chain D, Crystal Structure Of Coactivator-Associated Arginine
Methyltransferase 1 (Carm1), In Complex With S-Adenosyl-
Homocysteine
pdb|2V74|F Chain F, Crystal Structure Of Coactivator-Associated Arginine
Methyltransferase 1 (Carm1), In Complex With S-Adenosyl-
Homocysteine
pdb|2V74|H Chain H, Crystal Structure Of Coactivator-Associated Arginine
Methyltransferase 1 (Carm1), In Complex With S-Adenosyl-
Homocysteine
pdb|2V7E|A Chain A, Crystal Structure Of Coactivator-Associated Arginine
Methyltransferase 1 (Carm1), Unliganded
pdb|2V7E|B Chain B, Crystal Structure Of Coactivator-Associated Arginine
Methyltransferase 1 (Carm1), Unliganded
Length = 346
Score = 29.6 bits (65), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 42/85 (49%), Gaps = 8/85 (9%)
Query: 59 VILEIGPGTGNLTKKLLEAG-KMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKT 117
++L++G G+G L+ +AG + + AVE S M + +S ++R+ VI G V +
Sbjct: 44 IVLDVGCGSGILSFFAAQAGARKIYAVEA-STMAQHAEVLVKSNNLTDRIVVIPGKVEEV 102
Query: 118 DLPYFDICVANIPYQISSPLTFKLL 142
LP + IS P+ + L
Sbjct: 103 SLP------EQVDIIISEPMGYMLF 121
>pdb|3EGE|A Chain A, Crystal Structure Of Putative Methyltransferase From
Antibiotic Biosynthesis Pathway (Yp_324569.1) From
Anabaena Variabilis Atcc 29413 At 2.40 A Resolution
Length = 261
Score = 28.9 bits (63), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 21/42 (50%)
Query: 44 LVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEAGKMVIAVE 85
+V +I+ + VI +IG GTG + L G V AVE
Sbjct: 22 IVNAIINLLNLPKGSVIADIGAGTGGYSVALANQGLFVYAVE 63
>pdb|1VBF|A Chain A, Crystal Structure Of Protein L-Isoaspartate
O-Methyltransferase Homologue From Sulfolobus Tokodaii
pdb|1VBF|B Chain B, Crystal Structure Of Protein L-Isoaspartate
O-Methyltransferase Homologue From Sulfolobus Tokodaii
pdb|1VBF|C Chain C, Crystal Structure Of Protein L-Isoaspartate
O-Methyltransferase Homologue From Sulfolobus Tokodaii
pdb|1VBF|D Chain D, Crystal Structure Of Protein L-Isoaspartate
O-Methyltransferase Homologue From Sulfolobus Tokodaii
Length = 231
Score = 28.5 bits (62), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 3/54 (5%)
Query: 60 ILEIGPGTGNLTKKLLEAGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGD 113
+LEIG G G T + E V++VE++ + + Y N +K+I GD
Sbjct: 74 VLEIGTGIGYYTALIAEIVDKVVSVEINEKXYNYASKLLS---YYNNIKLILGD 124
>pdb|1KXZ|A Chain A, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, P1 Spacegroup
pdb|1KXZ|B Chain B, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, P1 Spacegroup
pdb|1KXZ|C Chain C, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, P1 Spacegroup
pdb|1KXZ|D Chain D, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, P1 Spacegroup
pdb|1KXZ|E Chain E, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, P1 Spacegroup
pdb|1KXZ|F Chain F, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, P1 Spacegroup
pdb|1KXZ|G Chain G, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, P1 Spacegroup
pdb|1KXZ|H Chain H, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, P1 Spacegroup
pdb|1L3B|A Chain A, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, C2 Spacegroup W LONG CELL
pdb|1L3B|B Chain B, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, C2 Spacegroup W LONG CELL
pdb|1L3B|C Chain C, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, C2 Spacegroup W LONG CELL
pdb|1L3B|D Chain D, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, C2 Spacegroup W LONG CELL
pdb|1L3B|E Chain E, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, C2 Spacegroup W LONG CELL
pdb|1L3B|F Chain F, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, C2 Spacegroup W LONG CELL
pdb|1L3B|G Chain G, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, C2 Spacegroup W LONG CELL
pdb|1L3B|H Chain H, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, C2 Spacegroup W LONG CELL
pdb|1L3C|A Chain A, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, C2 Spacegroup With Short
Cell
pdb|1L3C|B Chain B, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, C2 Spacegroup With Short
Cell
pdb|1L3C|C Chain C, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, C2 Spacegroup With Short
Cell
pdb|1L3C|D Chain D, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, C2 Spacegroup With Short
Cell
pdb|1L3I|A Chain A, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, Adohcy Binary Complex
pdb|1L3I|B Chain B, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, Adohcy Binary Complex
pdb|1L3I|C Chain C, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, Adohcy Binary Complex
pdb|1L3I|D Chain D, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, Adohcy Binary Complex
pdb|1L3I|E Chain E, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, Adohcy Binary Complex
pdb|1L3I|F Chain F, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, Adohcy Binary Complex
pdb|1F38|A Chain A, X-Ray Crystallographic Structure Of Precorrin 8w
Decarboxylase, The Product Of Gene Mt0146 In The
Methanobacterium Thermoautotrophicum Genome
pdb|1F38|B Chain B, X-Ray Crystallographic Structure Of Precorrin 8w
Decarboxylase, The Product Of Gene Mt0146 In The
Methanobacterium Thermoautotrophicum Genome
pdb|1F38|C Chain C, X-Ray Crystallographic Structure Of Precorrin 8w
Decarboxylase, The Product Of Gene Mt0146 In The
Methanobacterium Thermoautotrophicum Genome
pdb|1F38|D Chain D, X-Ray Crystallographic Structure Of Precorrin 8w
Decarboxylase, The Product Of Gene Mt0146 In The
Methanobacterium Thermoautotrophicum Genome
Length = 192
Score = 28.1 bits (61), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 17/71 (23%), Positives = 34/71 (47%), Gaps = 2/71 (2%)
Query: 58 DVILEIGPGTGNLTKKLLEAGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKT 117
DV +++G GTG +T +L + V A++ + + + Q + + + +GD +
Sbjct: 35 DVAVDVGCGTGGVTLELAGRVRRVYAIDRNPEAISTTEXNLQRHGLGDNVTLXEGDAPEA 94
Query: 118 --DLPYFDICV 126
+P DI V
Sbjct: 95 LCKIPDIDIAV 105
>pdb|3QEK|A Chain A, Crystal Structure Of Amino Terminal Domain Of The Nmda
Receptor Subunit Glun1
pdb|3QEK|B Chain B, Crystal Structure Of Amino Terminal Domain Of The Nmda
Receptor Subunit Glun1
Length = 384
Score = 27.7 bits (60), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 6/36 (16%)
Query: 57 TDVILEIGPGTGNLTKKLLEAGKMVIAVELDSRMVL 92
D +L+ PGT NLT LLEA EL++R+++
Sbjct: 191 ADKVLQFEPGTKNLTALLLEAK------ELEARVII 220
>pdb|3QEL|A Chain A, Crystal Structure Of Amino Terminal Domains Of The Nmda
Receptor Subunit Glun1 And Glun2b In Complex With
Ifenprodil
pdb|3QEL|C Chain C, Crystal Structure Of Amino Terminal Domains Of The Nmda
Receptor Subunit Glun1 And Glun2b In Complex With
Ifenprodil
pdb|3QEM|A Chain A, Crystal Structure Of Amino Terminal Domains Of The Nmda
Receptor Subunit Glun1 And Glun2b In Complex With Ro
25-6981
pdb|3QEM|C Chain C, Crystal Structure Of Amino Terminal Domains Of The Nmda
Receptor Subunit Glun1 And Glun2b In Complex With Ro
25-6981
Length = 383
Score = 27.7 bits (60), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 6/36 (16%)
Query: 57 TDVILEIGPGTGNLTKKLLEAGKMVIAVELDSRMVL 92
D +L+ PGT NLT LLEA EL++R+++
Sbjct: 190 ADKVLQFEPGTKNLTALLLEAK------ELEARVII 219
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.137 0.395
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,656,993
Number of Sequences: 62578
Number of extensions: 298043
Number of successful extensions: 669
Number of sequences better than 100.0: 44
Number of HSP's better than 100.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 611
Number of HSP's gapped (non-prelim): 46
length of query: 359
length of database: 14,973,337
effective HSP length: 100
effective length of query: 259
effective length of database: 8,715,537
effective search space: 2257324083
effective search space used: 2257324083
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)