BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 018261
(359 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9VAQ5|DIM1_DROME Probable dimethyladenosine transferase OS=Drosophila melanogaster
GN=CG11837 PE=2 SV=1
Length = 306
Score = 357 bits (917), Expect = 6e-98, Method: Compositional matrix adjust.
Identities = 177/355 (49%), Positives = 237/355 (66%), Gaps = 51/355 (14%)
Query: 5 KIRKEKGKQKSGPYQGQGLGAGGISFHKSKGQHILKNPLLVESIVQKAGIKSTDVILEIG 64
K+ KEK + Q QG I F+K GQHILKNPL++ ++++KA +++TDV+LEIG
Sbjct: 3 KVTKEKKSRIHNDVQKQG-----IVFNKDFGQHILKNPLVITTMLEKAALRATDVVLEIG 57
Query: 65 PGTGNLTKKLLEAGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTDLPYFDI 124
PGTGN+T ++LE K VIA E+D+R+ ELQ+R Q+TP +L+V+ GD LK +LP+FD+
Sbjct: 58 PGTGNMTVRMLERAKKVIACEIDTRLAAELQKRVQATPLQPKLQVLIGDFLKAELPFFDL 117
Query: 125 CVANIPYQISSPLTFKLLFHQPAFRCAIIMFQKEFAMRLVAQPGDKLYCRLSVNTQLHAR 184
C+AN+PYQISSPL FKLL H+P FRCA++MFQ+EFA RLVA+PGDKLYCRLS+NTQL AR
Sbjct: 118 CIANVPYQISSPLIFKLLLHRPLFRCAVLMFQREFAERLVAKPGDKLYCRLSINTQLLAR 177
Query: 185 VSHLLKVGKNNFRPPPKVDSSVVRIEPRKPRPQVNPVEWDGFLRICFIRKNKTLSSIFRL 244
V L+KVGKNNFRPPPKV+SSVVR+EP+ P P VN EWDG RI F+RKNKTL++ F++
Sbjct: 178 VDMLMKVGKNNFRPPPKVESSVVRLEPKNPPPPVNFTEWDGLTRIAFLRKNKTLAATFKV 237
Query: 245 KNVLSMLEKNYRTLQALQSSQNSSLGNTEIGTDTPSLGDSNGDQSMGVDDGSDDEMDVED 304
+VL MLEKNY+ ++L++ +ED
Sbjct: 238 TSVLEMLEKNYKLYRSLRNE------------------------------------PIED 261
Query: 305 DDGDSDVEGEVSEFKDKVLAVLREGQFEEKRASKLTQQEFLYLLSLFNKAGIHFS 359
D + +DKV+++L E KRA + +F+ LL FN AGIHF+
Sbjct: 262 D----------FKMQDKVISILEEQDMAAKRARSMDIDDFMRLLLAFNSAGIHFN 306
>sp|Q9D0D4|DIM1_MOUSE Probable dimethyladenosine transferase OS=Mus musculus GN=Dimt1
PE=2 SV=1
Length = 313
Score = 356 bits (914), Expect = 1e-97, Method: Compositional matrix adjust.
Identities = 179/335 (53%), Positives = 222/335 (66%), Gaps = 46/335 (13%)
Query: 25 AGGISFHKSKGQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEAGKMVIAV 84
AGG+ F+ GQHILKNPL+V SI+ KA ++ TDV+LE+GPGTGN+T KLLE K V+A
Sbjct: 25 AGGLMFNTGIGQHILKNPLIVNSIIDKAALRPTDVVLEVGPGTGNMTVKLLEKAKKVVAC 84
Query: 85 ELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTDLPYFDICVANIPYQISSPLTFKLLFH 144
ELD R+V EL +R Q TP +++L+V+ GDVLK+DLP+FD CVAN+PYQISSP FKLL H
Sbjct: 85 ELDPRLVAELHKRVQGTPLASKLQVLVGDVLKSDLPFFDACVANLPYQISSPFVFKLLLH 144
Query: 145 QPAFRCAIIMFQKEFAMRLVAQPGDKLYCRLSVNTQLHARVSHLLKVGKNNFRPPPKVDS 204
+P FRCAI+MFQ+EFA+RLVA+PGDKLYCRLS+NTQL ARV HL+KVGKNNFRPPPKV+S
Sbjct: 145 RPFFRCAILMFQREFALRLVAKPGDKLYCRLSINTQLLARVDHLMKVGKNNFRPPPKVES 204
Query: 205 SVVRIEPRKPRPQVNPVEWDGFLRICFIRKNKTLSSIFRLKNVLSMLEKNYRTLQALQSS 264
SVVRIEP+ P P +N EWDG +RI F+RKNKTLS+ F+ V +LEKNYR
Sbjct: 205 SVVRIEPKNPPPPINFQEWDGLVRITFVRKNKTLSAAFKSSAVQQLLEKNYRI------- 257
Query: 265 QNSSLGNTEIGTDTPSLGDSNGDQSMGVDDGSDDEMDVEDDDGDSDVEGEVSEFKDKVLA 324
+ S+ NT I D DK+
Sbjct: 258 -HCSVQNTVIPEDF--------------------------------------SIADKIQQ 278
Query: 325 VLREGQFEEKRASKLTQQEFLYLLSLFNKAGIHFS 359
+L F +KRA + +F+ LL FN GIHFS
Sbjct: 279 ILTSTGFSDKRARSMDIDDFIRLLHGFNAEGIHFS 313
>sp|Q9UNQ2|DIM1_HUMAN Probable dimethyladenosine transferase OS=Homo sapiens GN=DIMT1
PE=1 SV=1
Length = 313
Score = 355 bits (910), Expect = 4e-97, Method: Compositional matrix adjust.
Identities = 178/336 (52%), Positives = 221/336 (65%), Gaps = 46/336 (13%)
Query: 24 GAGGISFHKSKGQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEAGKMVIA 83
AGG+ F+ GQHILKNPL++ SI+ KA ++ TDV+LE+GPGTGN+T KLLE K V+A
Sbjct: 24 SAGGLMFNTGIGQHILKNPLIINSIIDKAALRPTDVVLEVGPGTGNMTVKLLEKAKKVVA 83
Query: 84 VELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTDLPYFDICVANIPYQISSPLTFKLLF 143
ELD R+V EL +R Q TP +++L+V+ GDVLKTDLP+FD CVAN+PYQISSP FKLL
Sbjct: 84 CELDPRLVAELHKRVQGTPVASKLQVLVGDVLKTDLPFFDTCVANLPYQISSPFVFKLLL 143
Query: 144 HQPAFRCAIIMFQKEFAMRLVAQPGDKLYCRLSVNTQLHARVSHLLKVGKNNFRPPPKVD 203
H+P FRCAI+MFQ+EFA+RLVA+PGDKLYCRLS+NTQL ARV HL+KVGKNNFRPPPKV+
Sbjct: 144 HRPFFRCAILMFQREFALRLVAKPGDKLYCRLSINTQLLARVDHLMKVGKNNFRPPPKVE 203
Query: 204 SSVVRIEPRKPRPQVNPVEWDGFLRICFIRKNKTLSSIFRLKNVLSMLEKNYRTLQALQS 263
SSVVRIEP+ P P +N EWDG +RI F+RKNKTLS+ F+ V +LEKNYR
Sbjct: 204 SSVVRIEPKNPPPPINFQEWDGLVRITFVRKNKTLSAAFKSSAVQQLLEKNYRI------ 257
Query: 264 SQNSSLGNTEIGTDTPSLGDSNGDQSMGVDDGSDDEMDVEDDDGDSDVEGEVSEFKDKVL 323
+ S+ N I D DK+
Sbjct: 258 --HCSVHNIIIPEDF--------------------------------------SIADKIQ 277
Query: 324 AVLREGQFEEKRASKLTQQEFLYLLSLFNKAGIHFS 359
+L F +KRA + +F+ LL FN GIHFS
Sbjct: 278 QILTSTGFSDKRARSMDIDDFIRLLHGFNAEGIHFS 313
>sp|Q2KHT8|DIM1_BOVIN Probable dimethyladenosine transferase OS=Bos taurus GN=DIMT1 PE=2
SV=1
Length = 313
Score = 353 bits (907), Expect = 9e-97, Method: Compositional matrix adjust.
Identities = 178/336 (52%), Positives = 220/336 (65%), Gaps = 46/336 (13%)
Query: 24 GAGGISFHKSKGQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEAGKMVIA 83
AGG+ F+ GQHILKNPL+V SI+ KA ++ TDV+LE+GPGTGN+T KLLE K VIA
Sbjct: 24 SAGGLMFNTGIGQHILKNPLIVNSIIDKAALRPTDVVLEVGPGTGNMTVKLLEKAKKVIA 83
Query: 84 VELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTDLPYFDICVANIPYQISSPLTFKLLF 143
ELD R+V EL +R Q TP +++L+V+ GDVLK DLP+FD CVAN+PYQISSP FKLL
Sbjct: 84 CELDPRLVAELHKRVQGTPLASKLQVMVGDVLKADLPFFDACVANLPYQISSPFVFKLLL 143
Query: 144 HQPAFRCAIIMFQKEFAMRLVAQPGDKLYCRLSVNTQLHARVSHLLKVGKNNFRPPPKVD 203
H+P FRCA++MFQ+EFA+RLVA+PGDKLYCRLS+NTQL ARV HL+KVGKNNFRPPPKV+
Sbjct: 144 HRPFFRCAVLMFQREFALRLVAKPGDKLYCRLSINTQLLARVDHLMKVGKNNFRPPPKVE 203
Query: 204 SSVVRIEPRKPRPQVNPVEWDGFLRICFIRKNKTLSSIFRLKNVLSMLEKNYRTLQALQS 263
SSVVRIEP+ P P +N EWDG +RI F+RKNKTLS+ F+ V +LEKNYR
Sbjct: 204 SSVVRIEPKNPPPPINFQEWDGLVRITFVRKNKTLSAAFKSSAVQQLLEKNYRI------ 257
Query: 264 SQNSSLGNTEIGTDTPSLGDSNGDQSMGVDDGSDDEMDVEDDDGDSDVEGEVSEFKDKVL 323
+ S+ N I D DK+
Sbjct: 258 --HCSVHNIIIPEDF--------------------------------------SIADKIQ 277
Query: 324 AVLREGQFEEKRASKLTQQEFLYLLSLFNKAGIHFS 359
+L F +KRA + +F+ LL FN GIHFS
Sbjct: 278 QILTSTGFSDKRARSMDIDDFIRLLHGFNAEGIHFS 313
>sp|Q95KJ0|DIM1_MACFA Probable dimethyladenosine transferase OS=Macaca fascicularis
GN=DIMT1 PE=2 SV=1
Length = 313
Score = 352 bits (904), Expect = 2e-96, Method: Compositional matrix adjust.
Identities = 177/336 (52%), Positives = 221/336 (65%), Gaps = 46/336 (13%)
Query: 24 GAGGISFHKSKGQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEAGKMVIA 83
AGG+ F+ GQHILKNPL++ SI+ KA ++ TDV+LE+GPGTGN+T KLLE K V+A
Sbjct: 24 SAGGLMFNTGIGQHILKNPLIINSIIDKAALRPTDVVLEVGPGTGNMTVKLLEKAKKVVA 83
Query: 84 VELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTDLPYFDICVANIPYQISSPLTFKLLF 143
ELD R+V EL++R Q TP +++L+V+ GDVLKTDLP+FD CVAN+PYQISSP FKLL
Sbjct: 84 CELDPRLVAELRKRVQGTPVASKLQVLVGDVLKTDLPFFDTCVANLPYQISSPFVFKLLL 143
Query: 144 HQPAFRCAIIMFQKEFAMRLVAQPGDKLYCRLSVNTQLHARVSHLLKVGKNNFRPPPKVD 203
H+P FRCAI+MFQ+E A+RLVA+PGDKLYCRLS+NTQL ARV HL+KVGKNNFRPPPKV+
Sbjct: 144 HRPFFRCAILMFQRELALRLVAKPGDKLYCRLSINTQLLARVDHLMKVGKNNFRPPPKVE 203
Query: 204 SSVVRIEPRKPRPQVNPVEWDGFLRICFIRKNKTLSSIFRLKNVLSMLEKNYRTLQALQS 263
SSVVRIEP+ P P +N EWDG +RI F+RKNKTLS+ F+ V +LEKNYR
Sbjct: 204 SSVVRIEPKNPPPPINFQEWDGLVRITFVRKNKTLSAAFKSSAVQQLLEKNYRI------ 257
Query: 264 SQNSSLGNTEIGTDTPSLGDSNGDQSMGVDDGSDDEMDVEDDDGDSDVEGEVSEFKDKVL 323
+ S+ N I D DK+
Sbjct: 258 --HCSVHNIIIPEDF--------------------------------------SIADKIQ 277
Query: 324 AVLREGQFEEKRASKLTQQEFLYLLSLFNKAGIHFS 359
+L F +KRA + +F+ LL FN GIHFS
Sbjct: 278 QILTSTGFSDKRARSMDIDDFIRLLHGFNAEGIHFS 313
>sp|Q54QK7|DIM1_DICDI Probable dimethyladenosine transferase OS=Dictyostelium discoideum
GN=dimt1 PE=3 SV=1
Length = 314
Score = 340 bits (873), Expect = 7e-93, Method: Compositional matrix adjust.
Identities = 175/329 (53%), Positives = 228/329 (69%), Gaps = 44/329 (13%)
Query: 30 FHKSKGQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEAGKMVIAVELDSR 89
+KS GQH+LKNPL++++IV K+ +KSTD +LEIGPGTGNLT KLLE K VIA+E+D R
Sbjct: 29 MNKSYGQHLLKNPLIIDAIVDKSQLKSTDTVLEIGPGTGNLTMKLLENCKKVIAIEVDPR 88
Query: 90 MVLELQRRFQSTPYSNRLKVIQGDVLKTDLPYFDICVANIPYQISSPLTFKLLFHQPAFR 149
M ELQ+R ++PY+ L++I GD LK DLPYFD+CVAN+PYQISSPLTFKLL H+P FR
Sbjct: 89 MAAELQKRVAASPYAQHLQIILGDFLKVDLPYFDVCVANVPYQISSPLTFKLLAHRPIFR 148
Query: 150 CAIIMFQKEFAMRLVAQPGDKLYCRLSVNTQLHARVSHLLKVGKNNFRPPPKVDSSVVRI 209
A++MFQKEFA+RL A+PGD LYCRLSVNTQL ++V+HL+KVGKNNF PPPKV+S+VVRI
Sbjct: 149 TAVLMFQKEFALRLGAKPGDSLYCRLSVNTQLLSKVTHLMKVGKNNFLPPPKVESAVVRI 208
Query: 210 EPRKPRPQVNPVEWDGFLRICFIRKNKTLSSIFRLKNVLSMLEKNYRTLQALQSSQNSSL 269
EP P P +N VEWDG +++CF RKNKTLS IFR+ +V+ L +NY+T AL+ N+
Sbjct: 209 EPFNPPPPINFVEWDGLVKLCFSRKNKTLSGIFRVSSVIETLNQNYKTYCALEGKMNT-- 266
Query: 270 GNTEIGTDTPSLGDSNGDQSMGVDDGSDDEMDVEDDDGDSDVEGEVSEFKDKVLAVLREG 329
DGSD++M K+ ++ L +
Sbjct: 267 ------------------------DGSDEQM------------------KELIIKTLTDN 284
Query: 330 QFEEKRASKLTQQEFLYLLSLFNKAGIHF 358
F + R+SKL +FL LL+ F++ GIHF
Sbjct: 285 DFLDSRSSKLDINDFLKLLNKFHETGIHF 313
>sp|Q6BSY5|DIM1_DEBHA Dimethyladenosine transferase OS=Debaryomyces hansenii (strain ATCC
36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968)
GN=DIM1 PE=3 SV=1
Length = 327
Score = 339 bits (870), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 168/330 (50%), Positives = 225/330 (68%), Gaps = 34/330 (10%)
Query: 30 FHKSKGQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEAGKMVIAVELDSR 89
F+ + GQHILKNPL+ + IV KAGIK +D++LE+GPGTGNLT ++LE + VIA E+D R
Sbjct: 32 FNTNLGQHILKNPLVAQGIVDKAGIKPSDIVLEVGPGTGNLTVRILEQARKVIASEMDPR 91
Query: 90 MVLELQRRFQSTPYSNRLKVIQGDVLKTDLPYFDICVANIPYQISSPLTFKLLFHQPAFR 149
M EL +R TP +L ++ GD +KT+LPYFD+C++N PYQISSPL FKLL R
Sbjct: 92 MAAELTKRVHGTPNQKKLDILLGDFIKTELPYFDVCISNTPYQISSPLVFKLLNQPRPPR 151
Query: 150 CAIIMFQKEFAMRLVAQPGDKLYCRLSVNTQLHARVSHLLKVGKNNFRPPPKVDSSVVRI 209
+I+MFQ+EFAMRL+A+PGD LYCRLS N Q+ A V+H++KV KNNFRPPP+V+SSVVRI
Sbjct: 152 VSILMFQREFAMRLLARPGDSLYCRLSANVQMWANVTHIMKVSKNNFRPPPQVESSVVRI 211
Query: 210 EPRKPRPQVNPVEWDGFLRICFIRKNKTLSSIFRLKNVLSMLEKNYRTLQALQSSQNSSL 269
E + PRP ++ EWDG LRICF+RKNKT+++ F+ N+L +LEKNY+T S+ N++
Sbjct: 212 EVKVPRPNIDFNEWDGLLRICFVRKNKTIAAGFKSNNILDILEKNYKT---FLSTANAA- 267
Query: 270 GNTEIGTDTPSLGDSNGDQSMGVDDGSDDEMDVEDDDGDSDVEGEVSEFKDKVLAVLREG 329
+NGD SM VDD S +D+ K K+ VL E
Sbjct: 268 --------------ANGDDSMMVDDKS----------SMTDI------VKAKIEQVLTET 297
Query: 330 QFEEKRASKLTQQEFLYLLSLFNKAGIHFS 359
F +KRA+KL Q +FL LL F++ G+HF+
Sbjct: 298 GFSDKRAAKLDQTDFLKLLYAFHQVGLHFA 327
>sp|Q9USU2|DIM1_SCHPO Dimethyladenosine transferase OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=dim1 PE=3 SV=1
Length = 307
Score = 328 bits (842), Expect = 3e-89, Method: Compositional matrix adjust.
Identities = 166/330 (50%), Positives = 215/330 (65%), Gaps = 46/330 (13%)
Query: 30 FHKSKGQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEAGKMVIAVELDSR 89
F+K GQHILKNPL+ + IV KA +K +D +LE+GPGTGNLT ++LE + VIAVE+D R
Sbjct: 24 FNKDFGQHILKNPLVAQGIVDKADLKQSDTVLEVGPGTGNLTVRMLEKARKVIAVEMDPR 83
Query: 90 MVLELQRRFQSTPYSNRLKVIQGDVLKTDLPYFDICVANIPYQISSPLTFKLLFHQPAFR 149
M E+ +R Q TP +L+V+ GDV+KTDLPYFD+CV+N PYQISSPL FKLL +PA R
Sbjct: 84 MAAEITKRVQGTPKEKKLQVVLGDVIKTDLPYFDVCVSNTPYQISSPLVFKLLQQRPAPR 143
Query: 150 CAIIMFQKEFAMRLVAQPGDKLYCRLSVNTQLHARVSHLLKVGKNNFRPPPKVDSSVVRI 209
AI+MFQ+EFA+RLVA+PGD LYCRLS N Q+ A V H++KVGKNNFRPPP V+SSVVRI
Sbjct: 144 AAILMFQREFALRLVARPGDPLYCRLSANVQMWAHVKHIMKVGKNNFRPPPLVESSVVRI 203
Query: 210 EPRKPRPQVNPVEWDGFLRICFIRKNKTLSSIFRLKNVLSMLEKNYRTLQALQSSQNSSL 269
EP+ P P + EWDG LRI F+RKNKT+ + F+ +++ M+E NYRT SQN
Sbjct: 204 EPKNPPPPLAFEEWDGLLRIVFLRKNKTIGACFKTSSIIEMVENNYRTW----CSQN--- 256
Query: 270 GNTEIGTDTPSLGDSNGDQSMGVDDGSDDEMDVEDDDGDSDVEGEVSEFKDKVLAVLREG 329
+ M ED D S ++G VL++
Sbjct: 257 ----------------------------ERMVEEDFDVKSLIDG-----------VLQQC 277
Query: 330 QFEEKRASKLTQQEFLYLLSLFNKAGIHFS 359
++ RASK Q EFL LL F++ G+HF+
Sbjct: 278 NLQDARASKCGQTEFLSLLHAFHQVGVHFA 307
>sp|P78697|DIM1_KLULA Dimethyladenosine transferase OS=Kluyveromyces lactis (strain ATCC
8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 /
WM37) GN=DIM1 PE=3 SV=3
Length = 320
Score = 328 bits (840), Expect = 4e-89, Method: Compositional matrix adjust.
Identities = 165/330 (50%), Positives = 215/330 (65%), Gaps = 40/330 (12%)
Query: 30 FHKSKGQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEAGKMVIAVELDSR 89
F+ GQHILKNPL+ + IV KA IK +D++LEIGPGTGNLT ++LE + V+AVE D R
Sbjct: 31 FNTDLGQHILKNPLVAQGIVDKAQIKPSDIVLEIGPGTGNLTVRILEQARKVVAVEFDPR 90
Query: 90 MVLELQRRFQSTPYSNRLKVIQGDVLKTDLPYFDICVANIPYQISSPLTFKLLFHQPAFR 149
M EL +R TP +L+++ GD +KT+LPYFD+C++N PYQISSPL FKL+ R
Sbjct: 91 MAAELTKRVHGTPVEKKLEILLGDFMKTELPYFDVCISNTPYQISSPLVFKLINQPKPPR 150
Query: 150 CAIIMFQKEFAMRLVAQPGDKLYCRLSVNTQLHARVSHLLKVGKNNFRPPPKVDSSVVRI 209
+I+MFQ+EFAMRL+A+PGD LYCRLS N Q+ A V+H++KVGKNNFRPPPKV+SSVVRI
Sbjct: 151 VSILMFQREFAMRLLARPGDSLYCRLSANVQMWANVTHIMKVGKNNFRPPPKVESSVVRI 210
Query: 210 EPRKPRPQVNPVEWDGFLRICFIRKNKTLSSIFRLKNVLSMLEKNYRTLQALQSSQNSSL 269
E + PRPQV+ EWDG LRI F+RKN+T+++ F+ VL +LEKNY+ A QS+
Sbjct: 211 EIKNPRPQVDFNEWDGLLRIVFVRKNRTIAAGFKSTTVLEILEKNYKAFLATQSA----- 265
Query: 270 GNTEIGTDTPSLGDSNGDQSMGVDDGSDDEMDVEDDDGDSDVEGEVSEFKDKVLAVLREG 329
T S GDS ++E K+K+ VL E
Sbjct: 266 ------VPTTSSGDS-----------------------------LINEVKEKIEQVLSET 290
Query: 330 QFEEKRASKLTQQEFLYLLSLFNKAGIHFS 359
EKRA K Q +FL LL F++ GIHF+
Sbjct: 291 GLAEKRAGKCDQTDFLKLLYGFHQVGIHFA 320
>sp|P41819|DIM1_YEAST Dimethyladenosine transferase OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=DIM1 PE=1 SV=1
Length = 318
Score = 325 bits (833), Expect = 4e-88, Method: Compositional matrix adjust.
Identities = 167/359 (46%), Positives = 224/359 (62%), Gaps = 41/359 (11%)
Query: 1 MAGGKIRKEKGKQKSGPYQGQGLGAGGISFHKSKGQHILKNPLLVESIVQKAGIKSTDVI 60
M +K G S + + F+ GQHILKNPL+ + IV KA I+ +DV+
Sbjct: 1 MGKAAKKKYSGATSSKQVSAEKHLSSVFKFNTDLGQHILKNPLVAQGIVDKAQIRPSDVV 60
Query: 61 LEIGPGTGNLTKKLLEAGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTDLP 120
LE+GPGTGNLT ++LE K V+AVE+D RM EL +R + TP +L+++ GD +KT+LP
Sbjct: 61 LEVGPGTGNLTVRILEQAKNVVAVEMDPRMAAELTKRVRGTPVEKKLEIMLGDFMKTELP 120
Query: 121 YFDICVANIPYQISSPLTFKLLFHQPAFRCAIIMFQKEFAMRLVAQPGDKLYCRLSVNTQ 180
YFDIC++N PYQISSPL FKL+ R +I+MFQ+EFA+RL+A+PGD LYCRLS N Q
Sbjct: 121 YFDICISNTPYQISSPLVFKLINQPRPPRVSILMFQREFALRLLARPGDSLYCRLSANVQ 180
Query: 181 LHARVSHLLKVGKNNFRPPPKVDSSVVRIEPRKPRPQVNPVEWDGFLRICFIRKNKTLSS 240
+ A V+H++KVGKNNFRPPP+V+SSVVR+E + PRPQV+ EWDG LRI F+RKN+T+S+
Sbjct: 181 MWANVTHIMKVGKNNFRPPPQVESSVVRLEIKNPRPQVDYNEWDGLLRIVFVRKNRTISA 240
Query: 241 IFRLKNVLSMLEKNYRTLQALQSSQNSSLGNTEIGTDTPSLGDSNGDQSMGVDDGSDDEM 300
F+ V+ +LEKNY+T A+ N E+ VDD
Sbjct: 241 GFKSTTVMDILEKNYKTFLAM---------NNEM-----------------VDDTKGSMH 274
Query: 301 DVEDDDGDSDVEGEVSEFKDKVLAVLREGQFEEKRASKLTQQEFLYLLSLFNKAGIHFS 359
DV K+K+ VL+E +KRA K Q +FL LL F++ GIHFS
Sbjct: 275 DV---------------VKEKIDTVLKETDLGDKRAGKCDQNDFLRLLYAFHQVGIHFS 318
>sp|Q6FKY3|DIM1_CANGA Dimethyladenosine transferase OS=Candida glabrata (strain ATCC 2001
/ CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=DIM1
PE=3 SV=1
Length = 317
Score = 325 bits (832), Expect = 4e-88, Method: Compositional matrix adjust.
Identities = 165/359 (45%), Positives = 221/359 (61%), Gaps = 42/359 (11%)
Query: 1 MAGGKIRKEKGKQKSGPYQGQGLGAGGISFHKSKGQHILKNPLLVESIVQKAGIKSTDVI 60
MA +K G + + F+ GQHILKNPL+ + IV KA IK +D++
Sbjct: 1 MAKADKKKYSGATTNKQVAAEKHLTSVFKFNTDLGQHILKNPLVAQGIVDKAQIKPSDIV 60
Query: 61 LEIGPGTGNLTKKLLEAGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTDLP 120
LE+GPGTGNLT ++LE + V+AVE+D RM EL +R TP +L+++ GD +KT+LP
Sbjct: 61 LEVGPGTGNLTVRILEQARKVVAVEMDPRMAAELTKRVHGTPAEKKLEIMLGDFMKTELP 120
Query: 121 YFDICVANIPYQISSPLTFKLLFHQPAFRCAIIMFQKEFAMRLVAQPGDKLYCRLSVNTQ 180
YFDIC++N PYQISSPL FKL+ R +I+MFQ+EFAMRL+A+PGD LYCRLS N Q
Sbjct: 121 YFDICISNTPYQISSPLVFKLINQPRPPRVSILMFQREFAMRLLARPGDSLYCRLSANVQ 180
Query: 181 LHARVSHLLKVGKNNFRPPPKVDSSVVRIEPRKPRPQVNPVEWDGFLRICFIRKNKTLSS 240
+ A V+H++KVG+NNFRPPP+V+SSVVRIE + PRPQ++ EWDG LRI F+RKN+T+S+
Sbjct: 181 MWANVTHIMKVGRNNFRPPPQVESSVVRIEIKNPRPQIDFNEWDGLLRIVFVRKNRTISA 240
Query: 241 IFRLKNVLSMLEKNYRTLQALQSSQNSSLGNTEIGTDTPSLGDSNGDQSMGVDDGSDDEM 300
F+ VL +LEKNY+T + +++ S DE
Sbjct: 241 GFKSTTVLEILEKNYKTF-------------------------------LAINNQSIDE- 268
Query: 301 DVEDDDGDSDVEGEVSEFKDKVLAVLREGQFEEKRASKLTQQEFLYLLSLFNKAGIHFS 359
E S K K+ VL+E EKRA K Q +FL LL F++ GIHFS
Sbjct: 269 ----------TENLQSLIKQKIETVLKETGLAEKRAGKCDQTDFLKLLYAFHQVGIHFS 317
>sp|Q75C90|DIM1_ASHGO Dimethyladenosine transferase OS=Ashbya gossypii (strain ATCC 10895
/ CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=DIM1 PE=3
SV=1
Length = 319
Score = 314 bits (805), Expect = 5e-85, Method: Compositional matrix adjust.
Identities = 159/331 (48%), Positives = 215/331 (64%), Gaps = 42/331 (12%)
Query: 30 FHKSKGQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEAGKMVIAVELDSR 89
F+ GQHILKNPL+ + IV KA IK +D++LE+GPGTGNLT ++LE + V+AVE D R
Sbjct: 30 FNTDLGQHILKNPLVAQGIVDKAQIKPSDIVLEVGPGTGNLTVRILEQARKVVAVEFDPR 89
Query: 90 MVLELQRRFQSTPYSNRLKVIQGDVLKTDLPYFDICVANIPYQISSPLTFKLLFHQPAFR 149
M EL +R TP +L+++ GD +KT+LPYFDIC++N PYQISSPL FKL+ R
Sbjct: 90 MAAELTKRVHGTPAEKKLEIMLGDFMKTELPYFDICISNTPYQISSPLVFKLINQPRPPR 149
Query: 150 CAIIMFQKEFAMRLVAQPGDKLYCRLSVNTQLHARVSHLLKVGKNNFRPPPKVDSSVVRI 209
+I+MFQ+EFAMRL+A+PGD LYCRLS N Q+ A V+H++KVG+NNFRPPP+V+SSVVRI
Sbjct: 150 VSILMFQREFAMRLLARPGDSLYCRLSANVQMWANVTHVMKVGRNNFRPPPQVESSVVRI 209
Query: 210 EPRKPRPQVNPVEWDGFLRICFIRKNKTLSSIFRLKNVLSMLEKNYRTLQALQSSQNSSL 269
E + PRP V+ EWDG LRI F+RKN+T+S+ F+ VL ++EKNY+ A ++ N ++
Sbjct: 210 EIKTPRPPVDFNEWDGLLRIVFVRKNRTISAGFKSTAVLEIMEKNYK---AYLATTNDAM 266
Query: 270 GNTEIGTDTPSLGDSNGDQSMGVDDGSDDEMDVEDDDGDSDVEGEVSE-FKDKVLAVLRE 328
VDD +G ++E K K+ VL E
Sbjct: 267 ----------------------VDDA----------------KGSLAEQVKQKIETVLAE 288
Query: 329 GQFEEKRASKLTQQEFLYLLSLFNKAGIHFS 359
+KRA K Q +FL LL F++ G+HFS
Sbjct: 289 TGLSDKRAGKCDQTDFLKLLYAFHQVGLHFS 319
>sp|Q09522|DIM1_CAEEL Probable dimethyladenosine transferase OS=Caenorhabditis elegans
GN=E02H1.1 PE=3 SV=2
Length = 308
Score = 313 bits (802), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 165/355 (46%), Positives = 214/355 (60%), Gaps = 53/355 (14%)
Query: 4 GKIRKEKGKQKSGPYQGQGLGAGGISFHKSKGQHILKNPLLVESIVQKAGIKSTDVILEI 63
K++K K +G Q + F+ KGQHILKNP +V +IV+K+ +K+TD +LE+
Sbjct: 5 SKVKKTKAGSSTGNVQS-------LPFNTDKGQHILKNPGVVNAIVEKSALKATDTVLEV 57
Query: 64 GPGTGNLTKKLLEAGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTDLPYFD 123
GPGTGNLT K+LE K VIA E+D RM+ E+++R TP N+L+V GDV+K + P+FD
Sbjct: 58 GPGTGNLTVKMLEVAKTVIACEIDPRMIAEVKKRVMGTPLQNKLQVNGGDVMKMEWPFFD 117
Query: 124 ICVANIPYQISSPLTFKLLFHQPAFRCAIIMFQKEFAMRLVAQPGDKLYCRLSVNTQLHA 183
+CVAN+PYQISSP KLL H+P R A++MFQKEFA RLVA+PGDK Y RLSVN QL A
Sbjct: 118 VCVANLPYQISSPFVQKLLLHRPLPRYAVLMFQKEFADRLVARPGDKDYSRLSVNVQLLA 177
Query: 184 RVSHLLKVGKNNFRPPPKVDSSVVRIEPRKPRPQVNPVEWDGFLRICFIRKNKTLSSIFR 243
+V L+KV + FRPPPKVDS+VVRI P+ P P VN VEW+G LR+CF+RKNKTL +IFR
Sbjct: 178 KVEMLMKVKRTEFRPPPKVDSAVVRIAPKNPPPPVNFVEWEGLLRLCFMRKNKTLMAIFR 237
Query: 244 LKNVLSMLEKNYRTLQALQSSQNSSLGNTEIGTDTPSLGDSNGDQSMGVDDGSDDEMDVE 303
L NV+ ++E N+R + S N I D
Sbjct: 238 LSNVIEVIEDNFRKV--------CSFKNKPIPKDL------------------------- 264
Query: 304 DDDGDSDVEGEVSEFKDKVLAVLREGQFEEKRASKLTQQEFLYLLSLFNKAGIHF 358
K + L + E RA K+ ++FL LL FNKA IHF
Sbjct: 265 -------------NMKKVIEETLTASGYGESRARKMRVEDFLALLLAFNKADIHF 306
>sp|Q6C7H6|DIM1_YARLI Dimethyladenosine transferase OS=Yarrowia lipolytica (strain CLIB
122 / E 150) GN=DIM1 PE=3 SV=1
Length = 317
Score = 311 bits (796), Expect = 6e-84, Method: Compositional matrix adjust.
Identities = 163/359 (45%), Positives = 224/359 (62%), Gaps = 42/359 (11%)
Query: 1 MAGGKIRKEKGKQKSGPYQGQGLGAGGISFHKSKGQHILKNPLLVESIVQKAGIKSTDVI 60
MA +K G + G+ + GQHILKNPL+ + IV K+ IK +D +
Sbjct: 1 MAKAPAKKFSGGAQRESAGGEQRKTAVFKMNTDLGQHILKNPLVAQGIVDKSDIKPSDTV 60
Query: 61 LEIGPGTGNLTKKLLEAGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTDLP 120
LE+GPGTGNLT ++LE + VIAVE+D RM EL +R Q P +L+++ GD +KT+LP
Sbjct: 61 LEVGPGTGNLTVRILEKARKVIAVEMDPRMAAELTKRVQGKPEQKKLEIMLGDCIKTELP 120
Query: 121 YFDICVANIPYQISSPLTFKLLFHQPAFRCAIIMFQKEFAMRLVAQPGDKLYCRLSVNTQ 180
YFD+C++N PYQISSPL FKLL R +++MFQ EFAMRL+A+PGD LYCRLSVN Q
Sbjct: 121 YFDVCISNTPYQISSPLVFKLLNQPRPPRVSVLMFQHEFAMRLLARPGDSLYCRLSVNVQ 180
Query: 181 LHARVSHLLKVGKNNFRPPPKVDSSVVRIEPRKPRPQVNPVEWDGFLRICFIRKNKTLSS 240
+ A+VSH++KVG+ NFRPPP V+SSVV+IE + PRP ++ EWDG LR+CF+RKNKT+++
Sbjct: 181 MWAKVSHVMKVGRGNFRPPPNVESSVVKIEVKNPRPPIDFNEWDGLLRVCFVRKNKTINA 240
Query: 241 IFRLKNVLSMLEKNYRTLQALQSSQNSSLGNTEIGTDTPSLGDSNGDQSMGVDDGSDDEM 300
F+ VL++LEKNY+T + Q EI + +GS+
Sbjct: 241 GFKTSAVLAVLEKNYQTWLSTQG---------EI-----------------IPEGSN--- 271
Query: 301 DVEDDDGDSDVEGEVSEFKDKVLAVLREGQFEEKRASKLTQQEFLYLLSLFNKAGIHFS 359
SDV K K+ +L + E R++K Q EFL LL+ F+KAGI+F+
Sbjct: 272 -------LSDV------VKQKINKILTDTGIGEMRSAKCDQTEFLTLLNEFHKAGIYFA 317
>sp|Q9V1P8|RSMA_PYRAB Probable ribosomal RNA small subunit methyltransferase A
OS=Pyrococcus abyssi (strain GE5 / Orsay) GN=rsmA PE=3
SV=1
Length = 269
Score = 162 bits (411), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 88/221 (39%), Positives = 135/221 (61%), Gaps = 10/221 (4%)
Query: 23 LGAGGISFHKSKGQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEAGKMVI 82
L GI + GQH L +++ ++ A + +DV+LE+GPG G LT +L + K V
Sbjct: 9 LSKYGIRPNDRIGQHFLIVKDVIDKAIEVAEVSKSDVVLEVGPGLGFLTDELSKRAKKVF 68
Query: 83 AVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTDLPYFDICVANIPYQISSPLTFKLL 142
+ELD R++ L+ + N +++IQGD +K + P F+ V+NIPYQISSP TFKLL
Sbjct: 69 TIELDRRIIEILRNEYSW----NNVEIIQGDAVKVEWPSFNKVVSNIPYQISSPFTFKLL 124
Query: 143 FHQPAFRCAIIMFQKEFAMRLVAQPGDKLYCRLSVNTQLHARVSHLLKVGKNNFRPPPKV 202
+ F A++M+Q EFA+R+ A+PGD+ Y RLS+ TQ A V ++++GK F P PKV
Sbjct: 125 --KMEFERAVVMYQLEFALRMTAKPGDRNYSRLSLMTQALADVEIVMRIGKGAFYPKPKV 182
Query: 203 DSSVVRIEPRKPRPQVNPVEWDGFLRICFIRKNKTLSSIFR 243
DS++V I P+K R ++N + ++ F + K +S R
Sbjct: 183 DSALVLITPKKDRIELN----ESLVKALFQHRRKVVSKALR 219
>sp|Q2FSA9|RSMA_METHJ Probable ribosomal RNA small subunit methyltransferase A
OS=Methanospirillum hungatei (strain JF-1 / DSM 864)
GN=rsmA PE=3 SV=1
Length = 256
Score = 161 bits (408), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 91/214 (42%), Positives = 128/214 (59%), Gaps = 10/214 (4%)
Query: 34 KGQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEAGKMVIAVELDSRMVLE 93
+ QH L +P +V I I S ++LEIGPG G LT+ LLE G VI+VELD ++
Sbjct: 5 RDQHFLTDPRIVARIADILDI-SGRIVLEIGPGEGILTEALLERGARVISVELDRTLIER 63
Query: 94 LQRRFQSTPYSNRLKVIQGDVLKTDLPYFDICVANIPYQISSPLTFKLLFHQPAFRCAII 153
L RRF S L ++QGD +K LP F+I +AN+PY ISSP+TF+LL F AI+
Sbjct: 64 LSRRFASEIADGSLTLLQGDAVKVPLPPFEIVMANLPYSISSPITFRLL--DIGFEAAIL 121
Query: 154 MFQKEFAMRLVAQPGDKLYCRLSVNTQLHARVSHLLKVGKNNFRPPPKVDSSVVRIEPRK 213
M+QKEFA R++A PG + RLS+ Q +AR + + F PPP V S+V+ IEPR+
Sbjct: 122 MYQKEFADRMMAHPGTRDCGRLSIMLQTYARANRCFDLPPGAFSPPPAVRSTVMWIEPRE 181
Query: 214 PRPQVNPVE----WDGFLRICFIRKNKTLSSIFR 243
P + P+ ++ +R F R+ KT+ S +
Sbjct: 182 P---LFPIHDRKIYEDLVRELFTRRRKTVQSTLK 212
>sp|O59487|RSMA_PYRHO Probable ribosomal RNA small subunit methyltransferase A
OS=Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428
/ JCM 9974 / NBRC 100139 / OT-3) GN=rsmA PE=3 SV=2
Length = 268
Score = 161 bits (407), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 91/229 (39%), Positives = 138/229 (60%), Gaps = 12/229 (5%)
Query: 23 LGAGGISFHKSKGQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEAGKMVI 82
L GI S GQH L ++E ++ A + DVILE+GPG G LT +L + K V
Sbjct: 9 LSKYGIRPRDSIGQHFLIIEDVIEKAIETANVNENDVILEVGPGLGFLTDELAKRAKKVY 68
Query: 83 AVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTDLPYFDICVANIPYQISSPLTFKLL 142
+E+D +++ L++ + N +K+IQGD ++ + P F+ V+NIPY+ISSP TFKLL
Sbjct: 69 TIEIDQKIIEILKKEYSW----NNVKIIQGDAVRVEWPKFNKVVSNIPYKISSPFTFKLL 124
Query: 143 FHQPAFRCAIIMFQKEFAMRLVAQPGDKLYCRLSVNTQLHARVSHLLKVGKNNFRPPPKV 202
+ F A++M+Q EFA+R+VA+PG + Y RLS+ Q V ++K+GK F P PKV
Sbjct: 125 --KTDFERAVVMYQLEFALRMVAKPGSRNYSRLSLMAQALGNVEIVMKIGKGAFYPRPKV 182
Query: 203 DSSVVRIEPRKPRPQVNPVEWDGFLRICFIRKNKTLSSIFRLKNVLSML 251
DS++V IEPRK + +N + ++ F + KT+ LK+ + ML
Sbjct: 183 DSALVLIEPRKDKIVLN----ENLVKALFQHRRKTVPR--ALKDSIHML 225
>sp|Q8TWU7|RSMA_METKA Probable ribosomal RNA small subunit methyltransferase A
OS=Methanopyrus kandleri (strain AV19 / DSM 6324 / JCM
9639 / NBRC 100938) GN=rsmA PE=3 SV=1
Length = 278
Score = 160 bits (406), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 94/221 (42%), Positives = 133/221 (60%), Gaps = 8/221 (3%)
Query: 27 GISFHKSKGQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEAGKMVIAVEL 86
GI + GQH + + ++E +V+ A ++ D++LEIGPG G LT+ L+ VIAVEL
Sbjct: 15 GIRPRRRLGQHFMVDDNILEFMVEAAEVREDDIVLEIGPGPGLLTRYLMTRAGQVIAVEL 74
Query: 87 DSRMVLELQRRFQSTPYSNRLKVIQGDVLKTDLP-YFDICVANIPYQISSPLTFKLLFHQ 145
D RMV L+R P L++++ D L+ D+P + VANIPY ISSP+TFKLL +
Sbjct: 75 DGRMVEILKRELGEAP---NLEIVRADFLEYDVPDDVNKVVANIPYNISSPITFKLL--E 129
Query: 146 PAFRCAIIMFQKEFAMRLVAQPGDKLYCRLSVNTQLHARVSHLLKVGKNNFRPPPKVDSS 205
A++ +Q+EFA R+VA+PG K Y RL+V L A V L V + F PPP+V SS
Sbjct: 130 LDIDVAVLTYQREFAERMVAEPGSKKYSRLTVMVNLLADVELLRGVPRRAFIPPPRVGSS 189
Query: 206 VVRIEPR--KPRPQVNPVEWDGFLRICFIRKNKTLSSIFRL 244
VVR+ P+ + RP V+P + R F KNKT+ + L
Sbjct: 190 VVRLTPKSEEERPDVDPDTLESVCRALFQHKNKTVRNALLL 230
>sp|C5A594|RSMA_THEGJ Probable ribosomal RNA small subunit methyltransferase A
OS=Thermococcus gammatolerans (strain DSM 15229 / JCM
11827 / EJ3) GN=rsmA PE=3 SV=1
Length = 278
Score = 157 bits (397), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 93/236 (39%), Positives = 148/236 (62%), Gaps = 14/236 (5%)
Query: 31 HKSKGQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEAGKMVIAVELDSRM 90
+++ GQ+ L P ++E V++A + D +LEIGPG G LT +L + V A+E DSRM
Sbjct: 17 NRTLGQNFLIVPDIIERNVKRAELSEKDTVLEIGPGLGVLTDELSKKAGKVYAIEADSRM 76
Query: 91 VLELQRRFQSTPYSNRLKVIQGDVLKTDLPYFDICVANIPYQISSPLTFKLLFHQPAFRC 150
+ LQR + S P +++I+GD +K + P F+ V+N+PYQISSP+TFKLL H+ F
Sbjct: 77 IEILQREY-SWP---NVELIKGDAVKVEWPEFNKMVSNLPYQISSPVTFKLLKHE--FER 130
Query: 151 AIIMFQKEFAMRLVAQPGDKLYCRLSVNTQLHARVSHLLKVGKNNFRPPPKVDSSVVRIE 210
A++++Q EFA R++A+PGD+ Y RLS+ Q A V + ++G+ F P PKVDS+VV +E
Sbjct: 131 AVLIYQLEFAERMIAKPGDRNYSRLSLMVQAKANVELVERIGRGAFWPRPKVDSAVVVLE 190
Query: 211 PR--KPRPQVNPVEWDGFLRICFIRKNKTLSSIFRLKNVLSMLEKNYRTLQALQSS 264
P+ K R ++N + ++ F + T++S LK ML + ++++ SS
Sbjct: 191 PKPEKERIELN----ENLVKALFQHRRSTVASA--LKKSAHMLGTDKKSIKDYLSS 240
>sp|Q12XH7|RSMA_METBU Probable ribosomal RNA small subunit methyltransferase A
OS=Methanococcoides burtonii (strain DSM 6242) GN=rsmA
PE=3 SV=1
Length = 270
Score = 154 bits (390), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 83/177 (46%), Positives = 115/177 (64%), Gaps = 5/177 (2%)
Query: 36 QHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEAGKMVIAVELDSRMVLELQ 95
QH L + ++SIV +A + DV+LEIG G GNLT++LLE V +ELD +V L+
Sbjct: 18 QHFLIDERSLDSIVDQAELSEKDVVLEIGGGIGNLTERLLEKAGKVYVIELDPALVHVLK 77
Query: 96 RRFQSTPYSNRLKVIQGDVLKTDLPYFDICVANIPYQISSPLTFKLLFHQPAFRCAIIMF 155
RF + +L++I GDVLK DLP F+ VAN+PY ISSP+TFKL H+ F I+M+
Sbjct: 78 DRFSD---NEKLEIIPGDVLKLDLPKFNKVVANLPYSISSPITFKLFKHE--FELGILMY 132
Query: 156 QKEFAMRLVAQPGDKLYCRLSVNTQLHARVSHLLKVGKNNFRPPPKVDSSVVRIEPR 212
Q EFA R+VA+ + Y RLSVNT A ++K+ + F PPP+V S+VV++ PR
Sbjct: 133 QYEFAQRMVAKANTENYSRLSVNTHYFADADIIMKIPPSAFSPPPEVWSAVVKVVPR 189
>sp|Q8TQU8|RSMA_METAC Probable ribosomal RNA small subunit methyltransferase A
OS=Methanosarcina acetivorans (strain ATCC 35395 / DSM
2834 / JCM 12185 / C2A) GN=rsmA PE=3 SV=1
Length = 269
Score = 153 bits (387), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 87/181 (48%), Positives = 114/181 (62%), Gaps = 6/181 (3%)
Query: 36 QHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEAGKMVIAVELDSRMVLELQ 95
QH L + ++ IV A + D ILEIG G GNLT++L K VIAVELD +V L
Sbjct: 18 QHFLIDIGYLDRIVVAAELSPQDTILEIGAGIGNLTERLARRAKKVIAVELDPALVSVLH 77
Query: 96 RRFQSTPYSNRLKVIQGDVLKTDLPYFDICVANIPYQISSPLTFKLLFHQPAFRCAIIMF 155
RF ++VI GD LK D P FD V+N+PY ISS +TFKLL ++ F+ I+M+
Sbjct: 78 DRFDKV---ENIEVIAGDALKVDFPEFDKVVSNLPYSISSEITFKLLRYK--FKLGILMY 132
Query: 156 QKEFAMRLVAQPGDKLYCRLSVNTQLHARVSHLLKVGKNNFRPPPKVDSSVVRIEPRKPR 215
Q EFA R+V+ PG K Y RL+V+T A S L+KV K F+P P+VDS+VV++ PR P
Sbjct: 133 QYEFAARMVSPPGRKDYSRLTVDTYYFADASILMKVPKGAFQPAPEVDSAVVKLVPR-PS 191
Query: 216 P 216
P
Sbjct: 192 P 192
>sp|Q8PU18|RSMA_METMA Probable ribosomal RNA small subunit methyltransferase A
OS=Methanosarcina mazei (strain ATCC BAA-159 / DSM 3647
/ Goe1 / Go1 / JCM 11833 / OCM 88) GN=rsmA PE=3 SV=2
Length = 271
Score = 153 bits (387), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 82/181 (45%), Positives = 117/181 (64%), Gaps = 6/181 (3%)
Query: 36 QHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEAGKMVIAVELDSRMVLELQ 95
QH L + ++ IV A + D +LEIG G GNLT++L K VIAVELD +V L
Sbjct: 18 QHFLIDAGYLDRIVAAAELSPQDTVLEIGAGIGNLTERLARRAKKVIAVELDPALVSVLH 77
Query: 96 RRFQSTPYSNRLKVIQGDVLKTDLPYFDICVANIPYQISSPLTFKLLFHQPAFRCAIIMF 155
RF + + +++I GD LK D P FD V+N+PY ISS +TFKLL H+ F+ ++M+
Sbjct: 78 DRFDA---AENIEIIAGDALKVDFPEFDKVVSNLPYSISSEITFKLLRHK--FKLGVLMY 132
Query: 156 QKEFAMRLVAQPGDKLYCRLSVNTQLHARVSHLLKVGKNNFRPPPKVDSSVVRIEPRKPR 215
Q EFA+R+V+ PG K Y RL+++T A S ++KV K F+P P+VDS+V+++ PR P
Sbjct: 133 QYEFAVRMVSPPGCKDYSRLTIDTCYFADASIVMKVPKGAFQPAPEVDSAVIKLIPR-PA 191
Query: 216 P 216
P
Sbjct: 192 P 192
>sp|Q5JI54|RSMA_PYRKO Probable ribosomal RNA small subunit methyltransferase A
OS=Pyrococcus kodakaraensis (strain ATCC BAA-918 / JCM
12380 / KOD1) GN=rsmA PE=3 SV=1
Length = 279
Score = 152 bits (383), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 86/209 (41%), Positives = 131/209 (62%), Gaps = 8/209 (3%)
Query: 35 GQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEAGKMVIAVELDSRMVLEL 94
GQ+ L P ++E +++A + D +LEIGPG G LT L + V A+E D R+V E+
Sbjct: 21 GQNFLIVPDIIERNIERAEVGEKDTVLEIGPGLGVLTDPLSKRAGKVYAIEKDCRIV-EI 79
Query: 95 QRRFQSTPYSNRLKVIQGDVLKTDLPYFDICVANIPYQISSPLTFKLLFHQPAFRCAIIM 154
RR + P +++I+GD LK + P F+ V+N+PYQISSP+TFKLL + F A+++
Sbjct: 80 LRREYNWP---NVEIIEGDALKVEWPEFNKMVSNLPYQISSPVTFKLLSRE--FERAVLI 134
Query: 155 FQKEFAMRLVAQPGDKLYCRLSVNTQLHARVSHLLKVGKNNFRPPPKVDSSVVRIEPRKP 214
FQ EFA R+VA+PGDK Y RLS+ + AR + ++GK F P PKVDS+VV +EP+ P
Sbjct: 135 FQLEFAERMVAKPGDKNYSRLSLMVRAKARAELVERIGKGAFWPRPKVDSAVVVLEPKPP 194
Query: 215 RPQVNPVEWDGFLRICFIRKNKTLSSIFR 243
+++ E ++ F + T+S+ +
Sbjct: 195 EERIDLNE--NLVKALFQHRRSTVSAALK 221
>sp|Q466S6|RSMA_METBF Probable ribosomal RNA small subunit methyltransferase A
OS=Methanosarcina barkeri (strain Fusaro / DSM 804)
GN=rsmA PE=3 SV=1
Length = 287
Score = 152 bits (383), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 84/181 (46%), Positives = 117/181 (64%), Gaps = 6/181 (3%)
Query: 36 QHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEAGKMVIAVELDSRMVLELQ 95
QH L + ++ IV A + DV+LEIG G GNLT++L + K VIA+ELD +V L
Sbjct: 28 QHFLVDAGYLDRIVAAAELGPKDVVLEIGAGVGNLTERLAKKVKKVIAIELDPVLVRVLH 87
Query: 96 RRFQSTPYSNRLKVIQGDVLKTDLPYFDICVANIPYQISSPLTFKLLFHQPAFRCAIIMF 155
RF +++I GD LK + P FD V+N+PY ISS +TFKLL H+ F+ I+M+
Sbjct: 88 DRFDKV---GNIEIIAGDALKVEFPEFDKIVSNLPYSISSEITFKLLRHK--FKLGILMY 142
Query: 156 QKEFAMRLVAQPGDKLYCRLSVNTQLHARVSHLLKVGKNNFRPPPKVDSSVVRIEPRKPR 215
Q EFA R+V+QP K Y RL+V+T A S L+KV K+ F+P P+VDS+V+++ PR P
Sbjct: 143 QYEFAARMVSQPNCKDYSRLTVDTCYFADASILMKVPKSAFQPAPEVDSAVIKLVPR-PV 201
Query: 216 P 216
P
Sbjct: 202 P 202
>sp|B6YTK7|RSMA_THEON Probable ribosomal RNA small subunit methyltransferase A
OS=Thermococcus onnurineus (strain NA1) GN=rsmA PE=3
SV=1
Length = 272
Score = 148 bits (374), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 84/217 (38%), Positives = 135/217 (62%), Gaps = 8/217 (3%)
Query: 27 GISFHKSKGQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEAGKMVIAVEL 86
G+ + GQ+ L ++E V++A + DV+LEIGPG G LT L + V A+E
Sbjct: 13 GLRANSDLGQNFLIVDDIIERNVERAELSGRDVVLEIGPGLGVLTDALSKRAGKVYAIEK 72
Query: 87 DSRMVLELQRRFQSTPYSNRLKVIQGDVLKTDLPYFDICVANIPYQISSPLTFKLLFHQP 146
D R+V L++ + +SN +++I+GD LK D P F+ V+N+PYQISSP+TF+ L +
Sbjct: 73 DPRLVEILRKEYN---WSN-VEIIEGDALKVDFPEFNKIVSNLPYQISSPITFRFLGY-- 126
Query: 147 AFRCAIIMFQKEFAMRLVAQPGDKLYCRLSVNTQLHARVSHLLKVGKNNFRPPPKVDSSV 206
F A++++Q EFA R+VA+PGD+ Y RLS+ Q + V + ++G+ F P PKVDS+V
Sbjct: 127 GFERAVLIYQLEFAQRMVARPGDRNYSRLSLMVQAKSYVELVERIGRGAFYPRPKVDSAV 186
Query: 207 VRIEPRKPRPQVNPVEWDGFLRICFIRKNKTLSSIFR 243
+ +EP KP+ +V + D +R F + T+++ +
Sbjct: 187 IVLEP-KPKSEVIELNED-LVRALFQHRRSTVAAALK 221
>sp|O28491|RSMA_ARCFU Probable ribosomal RNA small subunit methyltransferase A
OS=Archaeoglobus fulgidus (strain ATCC 49558 / VC-16 /
DSM 4304 / JCM 9628 / NBRC 100126) GN=rsmA PE=3 SV=1
Length = 244
Score = 148 bits (373), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 90/217 (41%), Positives = 125/217 (57%), Gaps = 14/217 (6%)
Query: 28 ISFHKSKGQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEAGKMVIAVELD 87
+ KS GQH+L + ++ IV A + DV+LE+G GTGNLT LL V+ +E D
Sbjct: 1 MKLRKSLGQHMLVDRRVISRIVGYAELSEDDVVLEVGCGTGNLTSALLRKCS-VVGIEKD 59
Query: 88 SRMVLELQRRFQSTPYSNRLKVIQGDVLKTDLPYFDICVANIPYQISSPLTFKLLFHQPA 147
MV L+ RF R ++IQGD LK D PYF VANIPY+ISSPLTFKLL +
Sbjct: 60 PLMVKRLRERFSDFIGKGRFRLIQGDALKVDFPYFTKFVANIPYKISSPLTFKLL--KTD 117
Query: 148 FRCAIIMFQKEFAMRLVAQPGDKLYCRLSVNTQLHARVSHLLKVGKNNFRPPPKVDSSVV 207
FR A++M+Q+EFA RL + RL V ++ + + L V ++F PPPKV+S++V
Sbjct: 118 FRLAVVMYQREFAERLCGEDN-----RLGVISKTYCKAEILEIVKPSSFNPPPKVESAIV 172
Query: 208 RIEPRKPRPQV---NPVEWDGFLRICFIRKNKTLSSI 241
RI P P+V N ++ F+ F + K + I
Sbjct: 173 RI---VPEPEVFVENRELFEKFVTFAFSMRRKRMGKI 206
>sp|C6A222|RSMA_THESM Probable ribosomal RNA small subunit methyltransferase A
OS=Thermococcus sibiricus (strain MM 739 / DSM 12597)
GN=rsmA PE=3 SV=1
Length = 273
Score = 147 bits (372), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 80/184 (43%), Positives = 122/184 (66%), Gaps = 6/184 (3%)
Query: 35 GQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEAGKMVIAVELDSRMVLEL 94
GQ+ L +++ V++A IK+++ ILEIGPG G LT +L + V A+E DSR++ L
Sbjct: 21 GQNFLIVGDVIKREVERAEIKNSETILEIGPGLGVLTDELAKRAGKVYAIEKDSRIIEIL 80
Query: 95 QRRFQSTPYSNRLKVIQGDVLKTDLPYFDICVANIPYQISSPLTFKLLFHQPAFRCAIIM 154
++ + +SN ++++QGD LK P F+ V+N+PYQISSP+TFKLL + F A+++
Sbjct: 81 KKEYN---WSN-VEIMQGDALKIKFPEFNKVVSNLPYQISSPITFKLLKYD--FERAVLI 134
Query: 155 FQKEFAMRLVAQPGDKLYCRLSVNTQLHARVSHLLKVGKNNFRPPPKVDSSVVRIEPRKP 214
+Q EFA R+VA+PGDK Y RLSV Q V + ++G+ F P PKVDS+V+ +EP+
Sbjct: 135 YQLEFAQRMVAKPGDKNYSRLSVMVQAKVNVDLVERIGRGAFYPKPKVDSAVIVMEPKPK 194
Query: 215 RPQV 218
Q+
Sbjct: 195 DEQI 198
>sp|Q8TH24|RSMA_PYRFU Probable ribosomal RNA small subunit methyltransferase A
OS=Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 /
JCM 8422 / Vc1) GN=rsmA PE=3 SV=1
Length = 273
Score = 147 bits (371), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 90/231 (38%), Positives = 139/231 (60%), Gaps = 14/231 (6%)
Query: 35 GQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEAGKMVIAVELDSRMVLEL 94
GQ+ L ++ V+ + IK +DV+LE+GPG G LT +L + V A+ELD R++ L
Sbjct: 21 GQNFLIMRDVIIKAVETSEIKKSDVVLEVGPGFGFLTDELSKRAGKVYAIELDKRIIEIL 80
Query: 95 QRRFQSTPYSNRLKVIQGDVLKTDLPYFDICVANIPYQISSPLTFKLLFHQPAFRCAIIM 154
+ + + N +++IQGD +K + P F+ V+NIPYQISSP TFKLL H F A++M
Sbjct: 81 ENEYN---WEN-VEIIQGDAVKIEWPEFNKVVSNIPYQISSPFTFKLLKHD--FEKAVVM 134
Query: 155 FQKEFAMRLVAQPGDKLYCRLSVNTQLHARVSHLLKVGKNNFRPPPKVDSSVVRI--EPR 212
+Q EFA R+VA+PGD+ Y RLS+ A ++K+G+ F P PKVDS++V I +P+
Sbjct: 135 YQLEFAKRMVAKPGDRNYSRLSLMVNALANAKIVMKIGRGAFYPKPKVDSALVLIVPKPK 194
Query: 213 KPRPQVNPVEWDGFLRICFIRKNKTLSSIFRLKNVLSMLEKNYRTLQALQS 263
R ++N + ++ F + K +S LK ML N + L+ L++
Sbjct: 195 DERIELN----ENLVKALFQHRRKLVSK--ALKESCHMLGINKKELKTLKN 239
>sp|B7JWJ7|RSMA_CYAP8 Ribosomal RNA small subunit methyltransferase A OS=Cyanothece sp.
(strain PCC 8801) GN=rsmA PE=3 SV=1
Length = 272
Score = 145 bits (365), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 88/243 (36%), Positives = 139/243 (57%), Gaps = 24/243 (9%)
Query: 32 KSKGQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEAGKMVIAVELDSRMV 91
K QH L++ ++ I++ A + +D++LEIGPGTG LT++LL + ++AVELD +
Sbjct: 6 KRFAQHWLRSETALDQIIEAAQLNMSDLVLEIGPGTGILTRRLLPLVQSIVAVELDRDLC 65
Query: 92 LELQRRFQSTPYSNRLKVIQGDVLKTDL-------PYF---DICVANIPYQISSPLTFKL 141
L + F + N +++GD+L DL P F + VANIPY I+SP+ KL
Sbjct: 66 YRLAKSFGNF---NHFLLLEGDILSLDLTTQLEQFPQFQPINKVVANIPYNITSPILEKL 122
Query: 142 L-----FHQPAFRCAIIMFQKEFAMRLVAQPGDKLYCRLSVNTQLHARVSHLLKVGKNNF 196
L P++ +++ QKE A R+VA P K Y LSV TQ A+ ++ +V F
Sbjct: 123 LGSIAHPQHPSYELIVLLMQKEVAQRIVASPQSKAYGALSVRTQYLAQCDYICEVPSKAF 182
Query: 197 RPPPKVDSSVVRIEPRK-PRPQVNPVEWDGFLRICFIRKNKTLSSIFRLKNVLSMLEKNY 255
PPPKVDS+V+R+ PR P +NP + D +++ F + K L + N+ S+++K++
Sbjct: 183 DPPPKVDSAVIRLTPRSLETPAINPQKLDQLVKLGFANRRKMLHN-----NLKSIIDKDH 237
Query: 256 RTL 258
TL
Sbjct: 238 LTL 240
>sp|Q18GB5|RSMA_HALWD Probable ribosomal RNA small subunit methyltransferase A
OS=Haloquadratum walsbyi (strain DSM 16790) GN=rsmA PE=3
SV=1
Length = 296
Score = 144 bits (362), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 93/258 (36%), Positives = 138/258 (53%), Gaps = 11/258 (4%)
Query: 26 GGISFHKSKGQHILKNPLLVESIVQKAGIKSTDV--ILEIGPGTGNLTKKLLEAGKMVIA 83
G+S + QH L + +++ I + STD ILEIG GTG LT +LL G V
Sbjct: 33 AGVSGDPNFDQHFLIDDRVLDRIPTYL-LDSTDTTHILEIGAGTGALTDRLLAVGDTVTV 91
Query: 84 VELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTDLPYFDICVANIPYQISSPLTFKLLF 143
+E D+ + L+ F RL +I+GD L+ LP F C++N+PY ISS + F+LL
Sbjct: 92 IERDATLAAFLREEFAVMIDDGRLNIIEGDALEVTLPAFTTCISNLPYGISSEILFELL- 150
Query: 144 HQPAFRCAIIMFQKEFAMRLVAQPGDKLYCRLSVNTQLHARVSHLLKVGKNNFRPPPKVD 203
PA I+M Q+EF R+ A PG Y RLSV+ Q +A V + V F P P VD
Sbjct: 151 --PADCPLIVMVQREFGERMAADPGTDAYGRLSVSAQHYATVEVVETVPPTAFAPEPAVD 208
Query: 204 SSVVRIEPRKPRPQV-NPVEWDGFLRICFIRKNKTLSSIFRLKNVLSMLEKNYRTLQALQ 262
S+++R EPR P V + + F++ F ++ KT+ + R +SML+ T A+
Sbjct: 209 SALIRAEPRDPDYTVTDETFFLRFVKAVFTQRRKTVRNAIRNTAHISMLD----TPDAVV 264
Query: 263 SSQNSSLGNTEIGTDTPS 280
++ + +L + G TPS
Sbjct: 265 NAADEALLSQRAGDLTPS 282
>sp|A6UTZ1|RSMA_META3 Probable ribosomal RNA small subunit methyltransferase A
OS=Methanococcus aeolicus (strain Nankai-3 / ATCC
BAA-1280) GN=rsmA PE=3 SV=1
Length = 271
Score = 142 bits (359), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 88/212 (41%), Positives = 123/212 (58%), Gaps = 11/212 (5%)
Query: 31 HKSKGQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEAGKMVIAVELDSRM 90
+K GQ LK+ +V+ + A I D++LEIG G G LTK+L + K VI +ELD ++
Sbjct: 4 NKKLGQCFLKDKNIVKKAINAANINKNDIVLEIGLGKGILTKELAKQCKKVIVIELDKKL 63
Query: 91 VLELQRRFQSTPYSNRLKVIQGDVLKTDLPY--FDICVANIPYQISSPLTFKLLFHQPAF 148
+ + + P +++I D LK +L F+ VAN+PYQISSP+TFKLL F
Sbjct: 64 EIFWEDIIKEYP---NVEIIWNDALKVNLKELGFNKVVANLPYQISSPITFKLL--DCDF 118
Query: 149 RCAIIMFQKEFAMRLVAQPGDKLYCRLSVNTQLHARVSHLLKVGKNNFRPPPKVDSSVVR 208
A++M+Q EFA R+ A G K Y RLSV+ Q A V ++ KV + F P PKVDS++V+
Sbjct: 119 EVAVLMYQYEFAKRMGAPSGTKEYSRLSVSVQYRAVVDYVCKVSPSAFSPKPKVDSAIVK 178
Query: 209 IEPRKPRPQVNPVEW---DGFLRICFIRKNKT 237
I +K P N W DGF R F +NK
Sbjct: 179 I-TKKNEPIHNIDNWEFFDGFNRALFQHRNKN 209
>sp|Q7NJ41|RSMA_GLOVI Ribosomal RNA small subunit methyltransferase A OS=Gloeobacter
violaceus (strain PCC 7421) GN=rsmA PE=3 SV=1
Length = 272
Score = 141 bits (356), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 101/277 (36%), Positives = 139/277 (50%), Gaps = 31/277 (11%)
Query: 32 KSKGQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEAGKMVIAVELDSRMV 91
K GQH L + +++ IV AG+ D +LEIGPG G+LT +LL V+AVE+D R V
Sbjct: 5 KRFGQHWLNDGAVLDRIVAAAGLACGDRVLEIGPGLGSLTARLLRQVP-VVAVEIDRRAV 63
Query: 92 LELQRRFQSTPYSNRLKVIQGDVLKTDLPY-FDICVANIPYQISSPLTFKLL--FHQPA- 147
+LQR+F R +++GD+L+ LP ++ VANIPY IS P+ KL QP
Sbjct: 64 AQLQRQFGG---DKRFVLVEGDILREALPEPANVVVANIPYNISGPILAKLTGSLAQPIR 120
Query: 148 -FRCAIIMFQKEFAMRLVAQPGDKLYCRLSVNTQLHARVSHLLKVGKNNFRPPPKVDSSV 206
FR +++ QKE R+ A PG + Y LSV Q A L +V + F PPPKVDS+V
Sbjct: 121 RFRTIVLLVQKELGQRIAAPPGSRTYGALSVRLQYLAECELLFEVPSHCFTPPPKVDSAV 180
Query: 207 VRIEPRKPRPQV-NPVEWDGFLRICFIRKNKTLSSIFRLKNVLSMLEKNYRTLQALQSSQ 265
+R+ PR Q +P D + F + K LKN L + + L A S
Sbjct: 181 IRLTPRPFALQADDPAHLDALVTRAFATRRKM------LKNCLKGWVETEKLLAAFASLD 234
Query: 266 NS--------------SLGNTEIGTDTPSLGDSNGDQ 288
S L N +D PS G + GD+
Sbjct: 235 ISPDARAEDLSVERFVQLSNRLAESDYPS-GAARGDR 270
>sp|Q58435|RSMA_METJA Probable ribosomal RNA small subunit methyltransferase A
OS=Methanocaldococcus jannaschii (strain ATCC 43067 /
DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=rsmA PE=1
SV=1
Length = 275
Score = 141 bits (355), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 89/217 (41%), Positives = 123/217 (56%), Gaps = 22/217 (10%)
Query: 32 KSKGQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEAGKMVIAVELDSRMV 91
K GQ L + V V+ A + DV+LEIG G G LT++L + K V +E+D +
Sbjct: 6 KKLGQCFLIDKNFVNKAVESANLTKDDVVLEIGLGKGILTEELAKNAKKVYVIEIDKSL- 64
Query: 92 LELQRRFQSTPYSNRLK-------VIQGDVLKTDLPYFDI--CVANIPYQISSPLTFKLL 142
PY+N+LK +I GD LK DL D VAN+PYQISSP+TFKL+
Sbjct: 65 ---------EPYANKLKELYNNIEIIWGDALKVDLNKLDFNKVVANLPYQISSPITFKLI 115
Query: 143 FHQPAFRCAIIMFQKEFAMRLVAQPGDKLYCRLSVNTQLHARVSHLLKVGKNNFRPPPKV 202
+ F A++M+Q EFA R+VA+ G K Y RLSV Q A V + KV + F P PKV
Sbjct: 116 --KRGFDLAVLMYQYEFAKRMVAKEGTKDYGRLSVAVQSRADVEIVAKVPPSAFYPKPKV 173
Query: 203 DSSVVRIEPRKPRPQV-NPVEWDGFLRICFIRKNKTL 238
S++V+I+P K + + N +D FLR F +NK++
Sbjct: 174 YSAIVKIKPNKGKYHIENENFFDDFLRAIFQHRNKSV 210
>sp|C1F127|RSMA_ACIC5 Ribosomal RNA small subunit methyltransferase A OS=Acidobacterium
capsulatum (strain ATCC 51196 / DSM 11244 / JCM 7670)
GN=rsmA PE=3 SV=1
Length = 283
Score = 140 bits (352), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 84/222 (37%), Positives = 120/222 (54%), Gaps = 12/222 (5%)
Query: 31 HKSK-GQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEAGKMVIAVELDSR 89
HK K GQ+ L + SIV+ G ++EIGPG G +T+ L + +IA+ELD
Sbjct: 22 HKPKLGQNFLVSEAACRSIVEALGNLGARTVVEIGPGKGAITELLANRAERLIAIELDRE 81
Query: 90 MVLELQRRFQSTPYSNRLKVIQGDVLKTDLPYFD------ICVANIPYQISSPLTFKLLF 143
+ L+ RF + VI+ DVL+ DL + V N+PY ++S + L+
Sbjct: 82 LAPRLRERFAR---RETVTVIEDDVLRVDLSALARPGEKLLVVGNLPYYMTSEILLHLIR 138
Query: 144 HQPAFRCAIIMFQKEFAMRLVAQPGDKLYCRLSVNTQLHARVSHLLKVGKNNFRPPPKVD 203
H+ A A++M Q+E A R+ A PG + Y LSV QLHARV LL + F PPP+V
Sbjct: 139 HEAAIERAVVMVQREVADRVAAGPGSRDYGLLSVTAQLHARVEKLLTLPPGAFSPPPEVY 198
Query: 204 SSVVR--IEPRKPRPQVNPVEWDGFLRICFIRKNKTLSSIFR 243
S+V+R + R V+P + GFLR CF +K KTL + R
Sbjct: 199 STVLRWTMHSRTDELGVDPTRFTGFLRSCFAQKRKTLGNNLR 240
>sp|Q88QT6|RSMA_PSEPK Ribosomal RNA small subunit methyltransferase A OS=Pseudomonas
putida (strain KT2440) GN=rsmA PE=3 SV=1
Length = 267
Score = 138 bits (347), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 82/220 (37%), Positives = 118/220 (53%), Gaps = 11/220 (5%)
Query: 32 KSKGQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEAGKMVIAVELDSRMV 91
K GQ+ L + +++ I++ K+ + +LEIGPG G LT+ LL +G + VELD +V
Sbjct: 11 KRFGQNFLHDAGIIDRILRAINAKAGEHLLEIGPGQGALTEGLLGSGAQLDVVELDKDLV 70
Query: 92 LELQRRFQSTPYSNRLKVIQGDVLKTDLPYFDI------CVANIPYQISSPLTFKLLFHQ 145
LQ +F + ++ QGD LK D + V N+PY IS+PL F LL H
Sbjct: 71 PILQHKFAD---RSNFRLHQGDALKFDFNQLGVPPRSLKVVGNLPYNISTPLIFHLLSHA 127
Query: 146 PAFRCAIIMFQKEFAMRLVAQPGDKLYCRLSVNTQLHARVSHLLKVGKNNFRPPPKVDSS 205
R M QKE R+ A PG + RLS+ Q H RV HL VG F PPPKVDS+
Sbjct: 128 GLIRDMHFMLQKEVVERMAAGPGGGDWGRLSIMVQYHCRVEHLFNVGPGAFNPPPKVDSA 187
Query: 206 VVRIEPRK--PRPQVNPVEWDGFLRICFIRKNKTLSSIFR 243
+VR+ P + P P + + + +R F ++ KTL + +
Sbjct: 188 IVRLVPHEVLPFPAKDHLLLERVVREAFNQRRKTLRNTMK 227
>sp|Q04C60|RSMA_LACDB Ribosomal RNA small subunit methyltransferase A OS=Lactobacillus
delbrueckii subsp. bulgaricus (strain ATCC BAA-365)
GN=rsmA PE=3 SV=1
Length = 296
Score = 138 bits (347), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 90/232 (38%), Positives = 131/232 (56%), Gaps = 17/232 (7%)
Query: 32 KSKGQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEAGKMVIAVELDSRM- 90
K+ GQ+ L + V+ IV+ AGI+ D ++E+GPG G+LT++LL AG V A E+D +
Sbjct: 26 KNLGQNFLVDLDAVQGIVRAAGIEPGDQVVEVGPGIGSLTEQLLLAGGKVAAYEVDQSLP 85
Query: 91 -VL--ELQRRFQSTPYSNRLKVIQGDVLKTDLP-----YFDI-----CVANIPYQISSPL 137
+L EL + R K+I DVLK D +FD+ VAN+PY I++P+
Sbjct: 86 EILANELPEKVDGQDLDQRFKLIMKDVLKADFATDLAGFFDLSKPVKVVANLPYYITTPI 145
Query: 138 TFKLLFHQPAFRCAIIMFQKEFAMRLVAQPGDKLYCRLSVNTQLHARVSHLLKVGKNNFR 197
F LL F +M QKE A RL AQPG K Y LS+ Q V L+VG +F
Sbjct: 146 IFNLLESSLDFTSLTLMMQKEVAERLAAQPGSKAYGPLSIAVQTQMSVDLALEVGHASFM 205
Query: 198 PPPKVDSSVVRIEP-RKPRPQVNPVEWDGFLRICFIRKNKTLSSIFRLKNVL 248
P PKVDS+VV + P KP + +++ +++CF ++ KTL++ LK +L
Sbjct: 206 PQPKVDSAVVVLTPLEKPADVGDRKQFNRVVKLCFAQRRKTLAN--NLKTLL 255
>sp|Q1GBR1|RSMA_LACDA Ribosomal RNA small subunit methyltransferase A OS=Lactobacillus
delbrueckii subsp. bulgaricus (strain ATCC 11842 / DSM
20081) GN=rsmA PE=3 SV=1
Length = 296
Score = 138 bits (347), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 90/232 (38%), Positives = 131/232 (56%), Gaps = 17/232 (7%)
Query: 32 KSKGQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEAGKMVIAVELDSRM- 90
K+ GQ+ L + V+ IV+ AGI+ D ++E+GPG G+LT++LL AG V A E+D +
Sbjct: 26 KNLGQNFLVDLDAVQGIVRAAGIEPGDQVVEVGPGIGSLTEQLLLAGGKVAAYEVDQSLP 85
Query: 91 -VL--ELQRRFQSTPYSNRLKVIQGDVLKTDLP-----YFDI-----CVANIPYQISSPL 137
+L EL + R K+I DVLK D +FD+ VAN+PY I++P+
Sbjct: 86 EILANELPEKVDGQDLDQRFKLIMKDVLKADFATDLAGFFDLSKPVKVVANLPYYITTPI 145
Query: 138 TFKLLFHQPAFRCAIIMFQKEFAMRLVAQPGDKLYCRLSVNTQLHARVSHLLKVGKNNFR 197
F LL F +M QKE A RL AQPG K Y LS+ Q V L+VG +F
Sbjct: 146 IFNLLESSLDFTSLTLMMQKEVAERLAAQPGSKAYGPLSIAVQTQMSVDLALEVGHASFM 205
Query: 198 PPPKVDSSVVRIEP-RKPRPQVNPVEWDGFLRICFIRKNKTLSSIFRLKNVL 248
P PKVDS+VV + P KP + +++ +++CF ++ KTL++ LK +L
Sbjct: 206 PQPKVDSAVVVLTPLEKPADVGDRKQFNRVVKLCFAQRRKTLAN--NLKTLL 255
>sp|Q6LYK4|RSMA_METMP Probable ribosomal RNA small subunit methyltransferase A
OS=Methanococcus maripaludis (strain S2 / LL) GN=rsmA
PE=3 SV=1
Length = 267
Score = 137 bits (346), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 81/213 (38%), Positives = 123/213 (57%), Gaps = 14/213 (6%)
Query: 32 KSKGQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEAGKMVIAVELDSRM- 90
K GQ LK+ V+ + +A I + D++LE+G G G LTK+L + K V +ELD R+
Sbjct: 5 KKLGQCFLKDKNFVKKAINRAEITNNDIVLEVGLGEGALTKELAKIAKKVYVIELDERLK 64
Query: 91 --VLELQRRFQSTPYSNRLKVIQGDVLKTDLPY--FDICVANIPYQISSPLTFKLLFHQP 146
E+ F++ +++I D LK DL F+ VAN+PYQISSP+TFK L +
Sbjct: 65 PFADEITAEFEN------VEIIWSDALKVDLKNLGFNKIVANLPYQISSPITFKFL--EE 116
Query: 147 AFRCAIIMFQKEFAMRLVAQPGDKLYCRLSVNTQLHARVSHLLKVGKNNFRPPPKVDSSV 206
F A++M+Q EFA R+ +P K Y RLSV Q +A V + KV + F P P V+S++
Sbjct: 117 DFETAVLMYQYEFAKRMAGKPDTKEYSRLSVAVQYNADVEFICKVPPSAFSPKPDVNSAI 176
Query: 207 VRIEPRKPRPQVNPVE-WDGFLRICFIRKNKTL 238
V++ R+P+ V E + L+ F +N+T+
Sbjct: 177 VKLTKREPKYHVKDEEFFKKVLKAVFQHRNRTI 209
>sp|O27381|RSMA_METTH Probable ribosomal RNA small subunit methyltransferase A
OS=Methanothermobacter thermautotrophicus (strain ATCC
29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta H)
GN=rsmA PE=3 SV=1
Length = 273
Score = 136 bits (342), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 82/217 (37%), Positives = 119/217 (54%), Gaps = 9/217 (4%)
Query: 27 GISFHKSKGQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEAGKMVIAVEL 86
G+ +S GQ+ L + + + I++ A ++ D +LEIGPG G LT + E V A+E
Sbjct: 16 GVRLRRSLGQNYLIDEVKRQRILEYADLREDDRVLEIGPGIGTLTLPMAELAGHVTAIES 75
Query: 87 DSRMVLELQRRFQSTPYSNRLKVIQGDVLKTDLPYFDICVANIPYQISSPLTFKLLFHQP 146
D + L R Q + + VI GD L+ D P F+ V+N+PYQISSP+TF+LL H
Sbjct: 76 DPLIAAILMDRLQV----DNVDVIVGDALRVDFPEFNKVVSNLPYQISSPITFRLLEHD- 130
Query: 147 AFRCAIIMFQKEFAMRLVAQPGDKLYCRLSVNTQLHARVSHLLKVGKNNFRPPPKVDSSV 206
F A++M+QKEFA R+VA+PG + Y RLSV A V + + F P P+V+S+V
Sbjct: 131 -FELAVLMYQKEFARRMVAEPGTREYSRLSVMVHFLAEVEIVDYLKPGCFFPRPRVESAV 189
Query: 207 VRIEPRKPRPQVNPVEWDGFLRICFIRKNKTLSSIFR 243
V ++P R P + R F + K S R
Sbjct: 190 VTLKPTGFR---APAFLEDVCRALFQHRKKKTSKSLR 223
>sp|Q88A46|RSMA_PSESM Ribosomal RNA small subunit methyltransferase A OS=Pseudomonas
syringae pv. tomato (strain DC3000) GN=rsmA PE=3 SV=1
Length = 268
Score = 136 bits (342), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 85/221 (38%), Positives = 117/221 (52%), Gaps = 11/221 (4%)
Query: 32 KSKGQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEAGKMVIAVELDSRMV 91
K GQ+ L + +++ I++ K D +LEIGPG G LT+ LL +G + VELD ++
Sbjct: 11 KRFGQNFLHDAGVIDKILRAIRAKPEDRLLEIGPGQGALTEGLLNSGAQLDVVELDKDLI 70
Query: 92 LELQRRFQSTPYSNRLKVIQGDVLKTDL------PYFDICVANIPYQISSPLTFKLLFHQ 145
L +F S P N + QGD LK D P V N+PY IS+PL F LL +
Sbjct: 71 PILNSQFASQPNFN---LHQGDALKFDFNTLGAEPRSLRVVGNLPYNISTPLIFHLLQNA 127
Query: 146 PAFRCAIIMFQKEFAMRLVAQPGDKLYCRLSVNTQLHARVSHLLKVGKNNFRPPPKVDSS 205
R M QKE R+ A PG + RLS+ Q H RV HL VG F PPPKVDS+
Sbjct: 128 SLIRDMHFMLQKEVVERMAAGPGGGDWGRLSIMVQYHCRVEHLFNVGPGAFNPPPKVDSA 187
Query: 206 VVRIEPRK--PRPQVNPVEWDGFLRICFIRKNKTLSSIFRL 244
+VR+ P + P P + + +R F ++ KTL + +L
Sbjct: 188 IVRLVPYETLPHPAKDHRVLERVVREAFNQRRKTLRNTLKL 228
>sp|Q4ZMG5|RSMA_PSEU2 Ribosomal RNA small subunit methyltransferase A OS=Pseudomonas
syringae pv. syringae (strain B728a) GN=rsmA PE=3 SV=1
Length = 268
Score = 135 bits (341), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 84/221 (38%), Positives = 118/221 (53%), Gaps = 11/221 (4%)
Query: 32 KSKGQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEAGKMVIAVELDSRMV 91
K GQ+ L + +++ I++ + D +LEIGPG G LT+ LL++G + VELD ++
Sbjct: 11 KRFGQNFLHDAGVIDKILRAIRARPEDRLLEIGPGQGALTEGLLDSGAQLDVVELDKDLI 70
Query: 92 LELQRRFQSTPYSNRLKVIQGDVLKTDL------PYFDICVANIPYQISSPLTFKLLFHQ 145
L +F S P N + QGD LK D P V N+PY IS+PL F LL +
Sbjct: 71 PILNGQFASKPNFN---LHQGDALKFDFNTLGADPRSLRVVGNLPYNISTPLIFHLLQNA 127
Query: 146 PAFRCAIIMFQKEFAMRLVAQPGDKLYCRLSVNTQLHARVSHLLKVGKNNFRPPPKVDSS 205
R M QKE R+ A PG + RLS+ Q H RV HL VG F PPPKVDS+
Sbjct: 128 SLIRDMHFMLQKEVVERMAAGPGGGDWGRLSIMVQYHCRVEHLFNVGPGAFNPPPKVDSA 187
Query: 206 VVRIEPRK--PRPQVNPVEWDGFLRICFIRKNKTLSSIFRL 244
+VR+ P + P P + + +R F ++ KTL + +L
Sbjct: 188 IVRLVPYETLPHPAKDHRVLERIVREAFNQRRKTLRNTLKL 228
>sp|A9AAW1|RSMA_METM6 Probable ribosomal RNA small subunit methyltransferase A
OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332)
GN=rsmA PE=3 SV=1
Length = 263
Score = 135 bits (340), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 81/213 (38%), Positives = 122/213 (57%), Gaps = 14/213 (6%)
Query: 32 KSKGQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEAGKMVIAVELDSRM- 90
K GQ LK+ V+ + +A I D++LE+G G G LTK+L + K V +ELD R+
Sbjct: 5 KKLGQCFLKDKNFVKKAINRAEITDKDIVLEVGLGEGALTKELAKLAKKVYVIELDERLK 64
Query: 91 --VLELQRRFQSTPYSNRLKVIQGDVLKTDLPY--FDICVANIPYQISSPLTFKLLFHQP 146
E+ F++ +++I D LK DL F+ VAN+PYQISSP+TFK L +
Sbjct: 65 PFADEITSEFEN------VEIIWSDALKVDLKNLGFNKIVANLPYQISSPITFKFL--EE 116
Query: 147 AFRCAIIMFQKEFAMRLVAQPGDKLYCRLSVNTQLHARVSHLLKVGKNNFRPPPKVDSSV 206
F A++M+Q EFA R+ +P K Y RLSV Q +A V + KV + F P P V+S++
Sbjct: 117 DFETAVLMYQYEFAKRMAGKPDTKEYSRLSVAVQYNADVEFICKVPPSAFSPKPDVNSAI 176
Query: 207 VRIEPRKPRPQVNPVE-WDGFLRICFIRKNKTL 238
V++ RKP+ V + + L+ F +N+T+
Sbjct: 177 VKLTKRKPKYSVKDEKFFKKVLKALFQHRNRTI 209
>sp|A6VFS2|RSMA_METM7 Probable ribosomal RNA small subunit methyltransferase A
OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331)
GN=rsmA PE=3 SV=1
Length = 263
Score = 135 bits (339), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 80/213 (37%), Positives = 122/213 (57%), Gaps = 14/213 (6%)
Query: 32 KSKGQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEAGKMVIAVELDSRM- 90
K GQ LK+ V+ + +A + D++LE+G G G LTK+L + K V +ELD R+
Sbjct: 5 KKLGQCFLKDKNFVKKAINRAELTDKDIVLEVGLGEGALTKELAKIAKKVYVIELDERLK 64
Query: 91 --VLELQRRFQSTPYSNRLKVIQGDVLKTDLPY--FDICVANIPYQISSPLTFKLLFHQP 146
E+ F++ +++I D LK DL F+ VAN+PYQISSP+TFK L +
Sbjct: 65 PFADEITSEFEN------VEIIWSDALKVDLKTLGFNKIVANLPYQISSPITFKFL--EE 116
Query: 147 AFRCAIIMFQKEFAMRLVAQPGDKLYCRLSVNTQLHARVSHLLKVGKNNFRPPPKVDSSV 206
F A++M+Q EFA R+ +P K Y RLSV Q +A V + KV + F P P V+S++
Sbjct: 117 DFEVAVLMYQYEFAKRMAGKPDTKEYSRLSVAVQYNADVEFICKVPPSAFSPKPDVNSAI 176
Query: 207 VRIEPRKPRPQVNPVE-WDGFLRICFIRKNKTL 238
V++ R+P+ V E + L+ F +N+T+
Sbjct: 177 VKLTKREPKYHVKDEEFFKKVLKAIFQHRNRTI 209
>sp|Q9I5U5|RSMA_PSEAE Ribosomal RNA small subunit methyltransferase A OS=Pseudomonas
aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 /
LMG 12228) GN=rsmA PE=3 SV=1
Length = 268
Score = 134 bits (338), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 85/227 (37%), Positives = 118/227 (51%), Gaps = 13/227 (5%)
Query: 32 KSKGQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEAGKMVIAVELDSRMV 91
K GQ+ L + ++ I++ + +LEIGPG G LT+ LL +G + +ELD ++
Sbjct: 11 KRFGQNFLHDAGVIHRILRAIHAREGQRLLEIGPGQGALTEGLLGSGARLDVIELDQDLI 70
Query: 92 LELQRRFQSTPYSNRLKVIQGDVLKTDLPYFD------ICVANIPYQISSPLTFKLLFHQ 145
L+ +F +R + QGD LK D V N+PY IS+PL F LL H
Sbjct: 71 PLLKLKFG---LESRFSLHQGDALKFDFASLVESGEKLRVVGNLPYNISTPLIFHLLEHA 127
Query: 146 PAFRCAIIMFQKEFAMRLVAQPGDKLYCRLSVNTQLHARVSHLLKVGKNNFRPPPKVDSS 205
P M QKE RL A PG + RLS+ Q H RV HL VG F PPPKVDS+
Sbjct: 128 PVIEDMHFMLQKEVVERLAATPGGGDWGRLSIMVQYHCRVEHLFNVGPGAFNPPPKVDSA 187
Query: 206 VVRIEP--RKPRPQVNPVEWDGFLRICFIRKNKTLSSIFRLKNVLSM 250
+VR+ P P P +P + +R F ++ KTL + LK +LS+
Sbjct: 188 IVRLTPFAEPPHPARDPKLLERVVREAFNQRRKTLRNT--LKPLLSV 232
>sp|Q3IPM0|RSMA_NATPD Probable ribosomal RNA small subunit methyltransferase A
OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678)
GN=rsmA PE=3 SV=1
Length = 274
Score = 134 bits (337), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 79/205 (38%), Positives = 113/205 (55%), Gaps = 4/205 (1%)
Query: 57 TDVILEIGPGTGNLTKKLLEAGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLK 116
TD +LEIG GTG LT +LL+ V +E D + L F + L VI+GD L+
Sbjct: 43 TDHVLEIGGGTGALTDRLLDVADRVTVIERDPGLATFLTDEFADEIEAGSLTVIEGDALE 102
Query: 117 TDLPYFDICVANIPYQISSPLTFKLLFHQPAFRCAIIMFQKEFAMRLVAQPGDKLYCRLS 176
LP F V+N+PY +SS + F+LL P R ++MFQ+EFA R+ A+PG Y RLS
Sbjct: 103 VPLPDFTASVSNLPYGVSSEIAFRLL---PEKRPLVLMFQQEFAERMAAEPGTDEYGRLS 159
Query: 177 VNTQLHARVSHLLKVGKNNFRPPPKVDSSVVRIEPRKPRPQVNPVE-WDGFLRICFIRKN 235
V +A V + V K F PPP V+S+VVR PR+P +V E + +R F ++
Sbjct: 160 VTAGHYADVEVVEPVPKEAFSPPPAVESAVVRTTPREPPYEVPDDELFMRLVRAVFTQRR 219
Query: 236 KTLSSIFRLKNVLSMLEKNYRTLQA 260
KT+ + R +S +E ++A
Sbjct: 220 KTMRNAVRNTTHISGIEDAEAVVEA 244
>sp|Q3K5T2|RSMA_PSEPF Ribosomal RNA small subunit methyltransferase A OS=Pseudomonas
fluorescens (strain Pf0-1) GN=rsmA PE=3 SV=1
Length = 272
Score = 134 bits (336), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 87/233 (37%), Positives = 122/233 (52%), Gaps = 16/233 (6%)
Query: 31 HKSK---GQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEAGKMVIAVELD 87
HK++ GQ+ L + +++ I++ K+ D +LEIGPG G LT +L +G + VELD
Sbjct: 7 HKARKRFGQNFLHDAGVIDRILRSINAKAGDRMLEIGPGQGALTAGILNSGAQLDVVELD 66
Query: 88 SRMVLELQRRFQSTPYSNRLKVIQGDVLKTDLPYFDIC------VANIPYQISSPLTFKL 141
++ L ++F N + QGD LK D + V N+PY IS+PL F L
Sbjct: 67 KDLIPILNQQFAGKSNFN---LHQGDALKFDFNSLNAAPNSLRVVGNLPYNISTPLIFHL 123
Query: 142 LFHQPAFRCAIIMFQKEFAMRLVAQPGDKLYCRLSVNTQLHARVSHLLKVGKNNFRPPPK 201
L + R M QKE RL A PG + RLS+ Q H RV HL VG F PPPK
Sbjct: 124 LNNAGIIRDMHFMLQKEVVERLAAGPGGGDWGRLSIMVQYHCRVEHLFNVGPGAFNPPPK 183
Query: 202 VDSSVVRIEPRK--PRPQVNPVEWDGFLRICFIRKNKTLSSIFRLKNVLSMLE 252
VDS++VR+ P P P + + +R F ++ KTL + LK +LS E
Sbjct: 184 VDSAIVRLVPHAVLPHPAKDHRLLERVVREAFNQRRKTLRNT--LKQLLSNAE 234
>sp|P59157|RSMA_THEEB Ribosomal RNA small subunit methyltransferase A
OS=Thermosynechococcus elongatus (strain BP-1) GN=rsmA
PE=3 SV=1
Length = 265
Score = 134 bits (336), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 87/224 (38%), Positives = 123/224 (54%), Gaps = 12/224 (5%)
Query: 28 ISFHKSKGQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEAGKMVIAVELD 87
I K GQH L++ ++ I+ A + D +LEIGPG G LT+ LL +G V+AVELD
Sbjct: 2 IRARKRFGQHWLRSEAILAQIIAAAELHPGDRVLEIGPGRGALTRPLLVSGAEVVAVELD 61
Query: 88 SRMVLELQRRFQSTPYSNRLKVIQGDVLKTDLPYFDI--CVANIPYQISSPLTFKLLF-- 143
+ +L+R+F S R ++I+GD+L+ DL VANIPY I+ PL LL
Sbjct: 62 RDLCGQLRRQFDS----ERFQLIEGDILRLDLAPLGCNKVVANIPYNITGPLLGHLLGSI 117
Query: 144 ---HQPAFRCAIIMFQKEFAMRLVAQPGDKLYCRLSVNTQLHARVSHLLKVGKNNFRPPP 200
+PAF I++ QKE RL+A PG K Y LSV Q A + V F+PPP
Sbjct: 118 ARPRRPAFERLILLVQKEIGDRLMASPGSKAYGALSVRVQFLATCEKVCAVPPRAFQPPP 177
Query: 201 KVDSSVVRIEPRKPRPQVNPVEW-DGFLRICFIRKNKTLSSIFR 243
KVDS VV + P + P+V +W + L+ F + K L++ +
Sbjct: 178 KVDSVVVCLRPHRTLPRVGSPQWLETLLKQGFATRRKMLANALK 221
>sp|Q48NT7|RSMA_PSE14 Ribosomal RNA small subunit methyltransferase A OS=Pseudomonas
syringae pv. phaseolicola (strain 1448A / Race 6)
GN=rsmA PE=3 SV=1
Length = 268
Score = 134 bits (336), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 84/221 (38%), Positives = 117/221 (52%), Gaps = 11/221 (4%)
Query: 32 KSKGQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEAGKMVIAVELDSRMV 91
K GQ+ L + +++ I++ K D +LEIGPG G LT+ LL +G + VELD ++
Sbjct: 11 KRFGQNFLHDAGVIDKILRAIRAKPEDRLLEIGPGQGALTEGLLNSGAQLDVVELDKDLI 70
Query: 92 LELQRRFQSTPYSNRLKVIQGDVLKTDL------PYFDICVANIPYQISSPLTFKLLFHQ 145
L +F + P N + QGD LK D P V N+PY IS+PL F LL +
Sbjct: 71 PILTGQFGNKPNFN---LHQGDALKFDFNSLGAEPRSLRVVGNLPYNISTPLIFHLLQNA 127
Query: 146 PAFRCAIIMFQKEFAMRLVAQPGDKLYCRLSVNTQLHARVSHLLKVGKNNFRPPPKVDSS 205
R M QKE R+ A PG + RLS+ Q H RV HL VG F PPPKVDS+
Sbjct: 128 SLIRDMHFMLQKEVVERMAAGPGGGDWGRLSIMVQYHCRVEHLFNVGPGAFNPPPKVDSA 187
Query: 206 VVRIEPRK--PRPQVNPVEWDGFLRICFIRKNKTLSSIFRL 244
+VR+ P + P P + + +R F ++ KTL + +L
Sbjct: 188 IVRLVPYETLPHPAKDHRVLERVVREAFNQRRKTLRNTLKL 228
>sp|A8YX55|RSMA_LACH4 Ribosomal RNA small subunit methyltransferase A OS=Lactobacillus
helveticus (strain DPC 4571) GN=rsmA PE=3 SV=1
Length = 294
Score = 133 bits (335), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 84/224 (37%), Positives = 129/224 (57%), Gaps = 15/224 (6%)
Query: 32 KSKGQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEAGKMVIAVELDSRM- 90
K+ GQ+ L + + IV+ A I + D ++EIGPG G+LT++LL AG V A E+D +
Sbjct: 26 KNLGQNFLIDQNAILGIVEAADIHAGDQVIEIGPGIGSLTEQLLLAGAKVFAYEVDDSLP 85
Query: 91 -VL--ELQRRFQSTPYSNRLKVIQGDVLKTDLP-----YFDI-----CVANIPYQISSPL 137
+L EL ++ P +R K++ DVLK + +FD+ VAN+PY I++P+
Sbjct: 86 EILQNELPKKIGDAPLEDRFKLMLKDVLKANFKEDLAGFFDMSKPIKVVANLPYYITTPI 145
Query: 138 TFKLLFHQPAFRCAIIMFQKEFAMRLVAQPGDKLYCRLSVNTQLHARVSHLLKVGKNNFR 197
F L F +M QKE A RL A+PG K Y L+++ Q V L+V N+F
Sbjct: 146 IFALAESDLHFASLTLMMQKEVAERLEAKPGSKEYGPLTISVQTEMDVKVALEVNHNSFM 205
Query: 198 PPPKVDSSVVRIEPRKPRPQV-NPVEWDGFLRICFIRKNKTLSS 240
P PKVDSSVV + P K +P++ N + +++CF ++ KTL++
Sbjct: 206 PRPKVDSSVVVLTPLKNKPEIENRKHFVWVVKMCFSQRRKTLNN 249
>sp|B4RBS4|RSMA_PHEZH Ribosomal RNA small subunit methyltransferase A OS=Phenylobacterium
zucineum (strain HLK1) GN=rsmA PE=3 SV=1
Length = 285
Score = 133 bits (335), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 85/232 (36%), Positives = 118/232 (50%), Gaps = 13/232 (5%)
Query: 17 PYQGQGLGAGGISFHKSKGQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLE 76
P + L A G+ K+ GQH L + + I + A + DV++E+GPG G LT+ LLE
Sbjct: 7 PTLREALEAHGLWAKKAFGQHFLLDLNITRKIARLAQVGDGDVVIEVGPGPGGLTRALLE 66
Query: 77 AGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTDLPYFDI-----CVANIPY 131
G VIAVE D R LQ + P+ L ++ GD L D V+N+PY
Sbjct: 67 TGARVIAVEKDERFRPLLQEVADAAPH---LTLVFGDALTADEAALSAGRPAHLVSNLPY 123
Query: 132 QISSPLTFKLLFHQPAFRCAIIMFQKEFAMRLVAQPGDKLYCRLSVNTQLHARVSHLLKV 191
+ +PL K L +MFQKE A R+ A PG+ Y RL+V Q A ++ V
Sbjct: 124 NVGTPLLIKWLTGPWTPASLTLMFQKEVADRITAAPGEDAYGRLAVIAQATADARPVMDV 183
Query: 192 GKNNFRPPPKVDSSVVRIEPRKPRPQVNPVEWDGFLRI---CFIRKNKTLSS 240
F PPPKV+S+VVR+EPR RP +P D ++ F ++ K L S
Sbjct: 184 PARAFTPPPKVESAVVRLEPRAARP--SPERLDALQKVTAAAFGQRRKMLRS 233
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.136 0.387
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 136,045,271
Number of Sequences: 539616
Number of extensions: 5956198
Number of successful extensions: 33014
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 865
Number of HSP's successfully gapped in prelim test: 390
Number of HSP's that attempted gapping in prelim test: 28985
Number of HSP's gapped (non-prelim): 2651
length of query: 359
length of database: 191,569,459
effective HSP length: 119
effective length of query: 240
effective length of database: 127,355,155
effective search space: 30565237200
effective search space used: 30565237200
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (28.5 bits)