Query 018261
Match_columns 359
No_of_seqs 421 out of 3324
Neff 7.3
Searched_HMMs 46136
Date Fri Mar 29 07:30:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018261.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018261hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0820 Ribosomal RNA adenine 100.0 1.7E-61 3.7E-66 441.9 22.2 313 1-359 1-315 (315)
2 PTZ00338 dimethyladenosine tra 100.0 1.3E-60 2.8E-65 455.4 25.0 290 25-359 5-294 (294)
3 COG0030 KsgA Dimethyladenosine 100.0 4.9E-57 1.1E-61 418.7 19.0 251 28-355 2-258 (259)
4 PRK00274 ksgA 16S ribosomal RN 100.0 1E-47 2.2E-52 364.0 19.1 257 23-353 9-270 (272)
5 TIGR00755 ksgA dimethyladenosi 100.0 3.4E-46 7.4E-51 350.0 19.1 249 28-351 1-253 (253)
6 PRK14896 ksgA 16S ribosomal RN 100.0 1.3E-45 2.8E-50 347.1 20.1 211 28-243 1-212 (258)
7 PF00398 RrnaAD: Ribosomal RNA 100.0 2E-44 4.3E-49 339.8 10.3 252 28-353 2-262 (262)
8 smart00650 rADc Ribosomal RNA 100.0 2.1E-32 4.6E-37 241.4 9.2 165 45-212 2-168 (169)
9 KOG0821 Predicted ribosomal RN 100.0 8.6E-30 1.9E-34 227.2 12.3 262 26-356 20-307 (326)
10 COG2226 UbiE Methylase involve 99.7 2.9E-15 6.3E-20 138.5 17.0 118 33-172 32-153 (238)
11 PF01209 Ubie_methyltran: ubiE 99.6 1.6E-15 3.5E-20 140.7 12.2 136 8-172 10-150 (233)
12 PF05175 MTS: Methyltransferas 99.5 5.4E-14 1.2E-18 124.2 11.5 127 49-188 24-153 (170)
13 PRK10258 biotin biosynthesis p 99.5 1.6E-14 3.4E-19 135.1 7.8 111 41-174 27-139 (251)
14 PF12847 Methyltransf_18: Meth 99.5 1.5E-13 3.3E-18 111.9 11.5 74 56-129 1-78 (112)
15 PLN02233 ubiquinone biosynthes 99.5 1.2E-12 2.6E-17 123.6 19.2 115 42-173 59-180 (261)
16 COG4123 Predicted O-methyltran 99.5 1.3E-13 2.7E-18 127.9 11.1 137 31-176 22-171 (248)
17 PHA03412 putative methyltransf 99.5 1.3E-13 2.7E-18 127.0 10.9 100 27-135 23-128 (241)
18 PLN02244 tocopherol O-methyltr 99.5 5.5E-13 1.2E-17 130.5 14.4 115 43-174 100-222 (340)
19 PTZ00098 phosphoethanolamine N 99.5 5.6E-13 1.2E-17 125.9 13.7 133 23-174 17-155 (263)
20 PRK15001 SAM-dependent 23S rib 99.5 8.4E-13 1.8E-17 130.3 14.6 126 46-187 218-352 (378)
21 TIGR01177 conserved hypothetic 99.5 1.2E-12 2.6E-17 127.5 15.3 129 39-176 165-295 (329)
22 PRK11207 tellurite resistance 99.5 8.7E-13 1.9E-17 119.3 13.1 108 48-172 22-131 (197)
23 TIGR00537 hemK_rel_arch HemK-r 99.4 1.3E-12 2.9E-17 116.0 13.5 85 49-135 12-96 (179)
24 PRK14967 putative methyltransf 99.4 1.9E-12 4.2E-17 119.2 14.0 94 41-136 21-116 (223)
25 TIGR00477 tehB tellurite resis 99.4 1.3E-12 2.8E-17 118.0 12.5 109 47-173 21-131 (195)
26 PF13847 Methyltransf_31: Meth 99.4 1.4E-12 3E-17 112.8 10.8 103 55-175 2-110 (152)
27 PRK15451 tRNA cmo(5)U34 methyl 99.4 2.7E-12 5.9E-17 120.0 13.6 105 54-173 54-162 (247)
28 PRK13944 protein-L-isoaspartat 99.4 5E-12 1.1E-16 115.0 15.0 97 34-131 51-152 (205)
29 PRK11036 putative S-adenosyl-L 99.4 2E-12 4.3E-17 121.4 12.7 112 45-174 34-148 (255)
30 COG2227 UbiG 2-polyprenyl-3-me 99.4 6.6E-13 1.4E-17 121.6 8.9 101 55-174 58-160 (243)
31 PF13659 Methyltransf_26: Meth 99.4 3.7E-13 8.1E-18 110.5 6.5 78 57-134 1-83 (117)
32 TIGR03533 L3_gln_methyl protei 99.4 6.5E-12 1.4E-16 120.0 15.5 92 44-135 108-203 (284)
33 TIGR00080 pimt protein-L-isoas 99.4 4E-12 8.6E-17 116.4 13.4 95 34-130 56-155 (215)
34 PF02353 CMAS: Mycolic acid cy 99.4 1.3E-12 2.7E-17 124.0 10.3 117 42-174 48-165 (273)
35 PLN02396 hexaprenyldihydroxybe 99.4 2.2E-12 4.8E-17 125.0 11.9 103 55-174 130-234 (322)
36 TIGR02752 MenG_heptapren 2-hep 99.4 5.5E-12 1.2E-16 116.2 14.0 115 40-172 29-148 (231)
37 PRK14103 trans-aconitate 2-met 99.4 2.4E-12 5.3E-17 120.7 11.8 107 44-175 17-126 (255)
38 PF08241 Methyltransf_11: Meth 99.4 2.7E-12 5.9E-17 100.4 9.8 91 61-172 1-94 (95)
39 TIGR00536 hemK_fam HemK family 99.4 5.9E-12 1.3E-16 120.2 14.0 95 42-136 99-197 (284)
40 PHA03411 putative methyltransf 99.4 5.9E-12 1.3E-16 118.5 13.6 93 34-135 45-140 (279)
41 PRK09489 rsmC 16S ribosomal RN 99.4 8.6E-12 1.9E-16 122.0 14.4 117 46-176 186-304 (342)
42 PRK13942 protein-L-isoaspartat 99.4 1.3E-11 2.7E-16 113.1 14.5 95 33-129 54-153 (212)
43 KOG1540 Ubiquinone biosynthesi 99.4 3.6E-11 7.9E-16 110.5 16.6 119 33-172 81-211 (296)
44 COG2230 Cfa Cyclopropane fatty 99.4 8E-12 1.7E-16 117.9 12.7 126 29-172 36-173 (283)
45 COG2890 HemK Methylase of poly 99.4 1.3E-11 2.8E-16 117.6 14.3 76 59-135 113-190 (280)
46 PRK14966 unknown domain/N5-glu 99.3 9.2E-12 2E-16 123.5 13.4 79 55-135 250-333 (423)
47 TIGR00740 methyltransferase, p 99.3 2E-11 4.3E-16 113.4 14.1 104 55-173 52-159 (239)
48 TIGR02469 CbiT precorrin-6Y C5 99.3 2.7E-11 5.9E-16 99.8 13.3 89 41-130 4-97 (124)
49 KOG1270 Methyltransferases [Co 99.3 6.7E-12 1.5E-16 115.9 10.5 100 57-174 90-194 (282)
50 PRK01683 trans-aconitate 2-met 99.3 1.2E-11 2.7E-16 115.9 12.4 110 43-175 18-130 (258)
51 PRK08287 cobalt-precorrin-6Y C 99.3 4E-11 8.7E-16 107.2 15.0 92 38-130 13-106 (187)
52 PLN02336 phosphoethanolamine N 99.3 1.4E-11 3E-16 125.6 13.6 124 32-174 240-368 (475)
53 PRK11805 N5-glutamine S-adenos 99.3 3E-11 6.6E-16 116.6 13.9 78 58-135 135-215 (307)
54 TIGR03704 PrmC_rel_meth putati 99.3 4.8E-11 1E-15 112.0 14.8 89 43-135 72-167 (251)
55 PRK09328 N5-glutamine S-adenos 99.3 5.8E-11 1.3E-15 112.1 15.5 93 42-135 94-189 (275)
56 PRK01544 bifunctional N5-gluta 99.3 3.2E-11 7E-16 123.8 14.7 119 57-177 139-271 (506)
57 PRK14968 putative methyltransf 99.3 6.4E-11 1.4E-15 105.1 14.7 90 47-136 14-105 (188)
58 COG2263 Predicted RNA methylas 99.3 2.9E-11 6.2E-16 107.0 12.1 110 30-143 17-135 (198)
59 PRK00107 gidB 16S rRNA methylt 99.3 3.4E-11 7.4E-16 108.1 12.4 76 53-129 42-120 (187)
60 TIGR00138 gidB 16S rRNA methyl 99.3 3.3E-11 7.1E-16 107.7 11.8 73 56-129 42-117 (181)
61 COG2813 RsmC 16S RNA G1207 met 99.3 4.9E-11 1.1E-15 113.0 13.5 131 46-189 148-280 (300)
62 TIGR03534 RF_mod_PrmC protein- 99.3 9.2E-11 2E-15 109.0 15.3 92 42-135 74-168 (251)
63 PRK00312 pcm protein-L-isoaspa 99.3 7.6E-11 1.7E-15 107.5 13.8 92 38-130 60-153 (212)
64 COG2242 CobL Precorrin-6B meth 99.3 1.3E-10 2.8E-15 103.0 14.5 90 39-129 17-110 (187)
65 PRK13168 rumA 23S rRNA m(5)U19 99.3 5.5E-11 1.2E-15 120.4 13.8 108 27-135 264-381 (443)
66 PRK00377 cbiT cobalt-precorrin 99.3 1.2E-10 2.5E-15 105.4 14.3 91 39-129 23-119 (198)
67 COG2518 Pcm Protein-L-isoaspar 99.3 4.9E-11 1.1E-15 107.8 11.6 95 33-129 50-146 (209)
68 PF13649 Methyltransf_25: Meth 99.3 1E-11 2.2E-16 99.8 6.4 81 60-142 1-90 (101)
69 PRK12335 tellurite resistance 99.3 6E-11 1.3E-15 113.4 12.6 82 49-132 113-195 (287)
70 PRK03522 rumB 23S rRNA methylu 99.2 4.9E-11 1.1E-15 115.5 12.0 107 28-135 141-254 (315)
71 PRK15068 tRNA mo(5)U34 methylt 99.2 7.5E-11 1.6E-15 114.6 13.0 112 46-174 112-225 (322)
72 TIGR00406 prmA ribosomal prote 99.2 9.1E-11 2E-15 112.3 13.2 87 43-130 147-234 (288)
73 TIGR00452 methyltransferase, p 99.2 8.1E-11 1.8E-15 113.7 12.8 120 38-174 98-224 (314)
74 TIGR02021 BchM-ChlM magnesium 99.2 2.3E-10 4.9E-15 104.9 14.7 86 43-129 40-127 (219)
75 PRK05785 hypothetical protein; 99.2 1.3E-10 2.8E-15 107.4 12.4 80 42-130 35-119 (226)
76 PRK00121 trmB tRNA (guanine-N( 99.2 1.3E-10 2.9E-15 105.4 11.9 109 56-176 40-157 (202)
77 PRK15128 23S rRNA m(5)C1962 me 99.2 1.8E-10 3.8E-15 114.8 13.6 109 25-135 187-307 (396)
78 PRK11873 arsM arsenite S-adeno 99.2 1.3E-10 2.7E-15 110.0 12.0 104 52-173 73-181 (272)
79 PRK10909 rsmD 16S rRNA m(2)G96 99.2 1.6E-10 3.4E-15 104.8 12.0 91 42-133 38-133 (199)
80 COG2264 PrmA Ribosomal protein 99.2 1.6E-10 3.6E-15 109.9 12.5 95 34-129 141-237 (300)
81 TIGR02085 meth_trns_rumB 23S r 99.2 1.3E-10 2.9E-15 115.1 12.3 131 27-178 200-337 (374)
82 TIGR00446 nop2p NOL1/NOP2/sun 99.2 2.9E-10 6.3E-15 107.5 13.5 85 48-133 63-152 (264)
83 PRK07402 precorrin-6B methylas 99.2 5.7E-10 1.2E-14 100.6 14.7 77 39-116 23-101 (196)
84 smart00828 PKS_MT Methyltransf 99.2 2.7E-10 5.8E-15 104.4 12.7 100 58-174 1-103 (224)
85 COG4106 Tam Trans-aconitate me 99.2 7.8E-11 1.7E-15 106.0 8.7 86 45-136 19-107 (257)
86 PRK04266 fibrillarin; Provisio 99.2 2.9E-10 6.2E-15 105.1 12.8 110 43-174 56-175 (226)
87 PRK00517 prmA ribosomal protei 99.2 2.2E-10 4.9E-15 107.3 12.2 95 54-174 117-212 (250)
88 PF06325 PrmA: Ribosomal prote 99.2 6.7E-11 1.4E-15 113.2 8.7 100 28-130 134-234 (295)
89 PRK10901 16S rRNA methyltransf 99.2 3.2E-10 6.8E-15 114.3 13.9 92 40-133 228-325 (427)
90 PRK08317 hypothetical protein; 99.2 5.6E-10 1.2E-14 102.2 13.9 112 43-173 6-122 (241)
91 TIGR02716 C20_methyl_CrtF C-20 99.2 5.1E-10 1.1E-14 107.8 14.2 114 43-173 136-252 (306)
92 PRK14903 16S rRNA methyltransf 99.2 4.7E-10 1E-14 113.1 14.4 137 39-179 220-371 (431)
93 PRK11783 rlmL 23S rRNA m(2)G24 99.2 1.5E-10 3.3E-15 123.3 11.5 96 38-135 522-622 (702)
94 PRK14904 16S rRNA methyltransf 99.1 4.4E-10 9.5E-15 113.9 13.6 88 46-134 240-331 (445)
95 PLN02336 phosphoethanolamine N 99.1 3.2E-10 6.9E-15 115.7 12.5 115 41-174 22-141 (475)
96 PRK13943 protein-L-isoaspartat 99.1 8.9E-10 1.9E-14 106.9 14.9 92 37-129 61-157 (322)
97 PF03848 TehB: Tellurite resis 99.1 3.5E-10 7.6E-15 101.6 11.1 82 47-130 21-103 (192)
98 PF01135 PCMT: Protein-L-isoas 99.1 1.4E-10 3.1E-15 105.8 8.6 96 34-131 51-151 (209)
99 PRK11705 cyclopropane fatty ac 99.1 6.9E-10 1.5E-14 110.3 13.9 112 43-174 154-266 (383)
100 PRK00216 ubiE ubiquinone/menaq 99.1 7.4E-10 1.6E-14 101.7 13.2 89 41-129 36-129 (239)
101 PF05401 NodS: Nodulation prot 99.1 2.1E-10 4.5E-15 102.6 9.1 82 51-135 38-121 (201)
102 PLN02490 MPBQ/MSBQ methyltrans 99.1 5.1E-10 1.1E-14 109.2 12.6 111 42-173 98-213 (340)
103 PRK11188 rrmJ 23S rRNA methylt 99.1 5.7E-10 1.2E-14 101.9 12.1 109 49-175 43-165 (209)
104 TIGR00563 rsmB ribosomal RNA s 99.1 5.6E-10 1.2E-14 112.5 13.1 135 42-179 224-373 (426)
105 TIGR00091 tRNA (guanine-N(7)-) 99.1 5E-10 1.1E-14 101.0 11.4 110 56-175 16-132 (194)
106 PRK14901 16S rRNA methyltransf 99.1 5.3E-10 1.2E-14 112.9 12.7 95 38-133 234-337 (434)
107 PLN02672 methionine S-methyltr 99.1 5.6E-10 1.2E-14 122.0 13.4 99 38-136 95-218 (1082)
108 TIGR02072 BioC biotin biosynth 99.1 4.3E-10 9.2E-15 103.2 10.7 111 42-174 17-134 (240)
109 PRK07580 Mg-protoporphyrin IX 99.1 2E-09 4.3E-14 98.8 14.9 86 45-131 49-137 (230)
110 TIGR00095 RNA methyltransferas 99.1 9.1E-10 2E-14 99.1 12.3 97 37-133 29-133 (189)
111 COG2519 GCD14 tRNA(1-methylade 99.1 2.2E-09 4.8E-14 99.3 14.7 141 44-209 82-226 (256)
112 PRK14902 16S rRNA methyltransf 99.1 9.2E-10 2E-14 111.5 13.1 88 44-132 238-331 (444)
113 KOG2904 Predicted methyltransf 99.1 1.5E-09 3.2E-14 100.9 12.8 95 42-136 131-237 (328)
114 PF07021 MetW: Methionine bios 99.1 2.3E-09 5E-14 95.6 13.4 144 47-228 6-156 (193)
115 PF02384 N6_Mtase: N-6 DNA Met 99.1 4.7E-10 1E-14 108.1 9.8 180 30-214 21-235 (311)
116 PLN03075 nicotianamine synthas 99.1 2.6E-09 5.7E-14 101.9 14.5 148 48-212 115-275 (296)
117 PRK11727 23S rRNA mA1618 methy 99.1 6.3E-10 1.4E-14 107.6 10.3 82 56-137 114-205 (321)
118 PRK14121 tRNA (guanine-N(7)-)- 99.1 2E-09 4.4E-14 106.3 14.0 117 48-176 114-236 (390)
119 TIGR00479 rumA 23S rRNA (uraci 99.1 9.3E-10 2E-14 111.0 11.9 105 28-133 260-374 (431)
120 PF01170 UPF0020: Putative RNA 99.1 2.7E-10 5.9E-15 101.6 7.0 96 39-134 11-119 (179)
121 PF08242 Methyltransf_12: Meth 99.1 1.4E-11 3E-16 98.5 -1.5 73 61-134 1-79 (99)
122 PRK06922 hypothetical protein; 99.1 1.2E-09 2.6E-14 113.4 12.0 80 52-133 414-499 (677)
123 TIGR03840 TMPT_Se_Te thiopurin 99.0 3.9E-09 8.4E-14 96.8 13.9 82 48-129 26-121 (213)
124 PLN02585 magnesium protoporphy 99.0 3.1E-09 6.8E-14 102.8 13.8 87 43-130 128-221 (315)
125 PRK11088 rrmA 23S rRNA methylt 99.0 3.3E-09 7.2E-14 100.6 13.4 91 55-175 84-181 (272)
126 TIGR01934 MenG_MenH_UbiE ubiqu 99.0 2.5E-09 5.4E-14 97.2 12.1 112 41-172 24-140 (223)
127 PF13489 Methyltransf_23: Meth 99.0 8.9E-10 1.9E-14 94.8 8.4 104 45-176 10-116 (161)
128 COG1041 Predicted DNA modifica 99.0 2.3E-09 5E-14 103.5 11.7 97 39-136 180-279 (347)
129 PF08704 GCD14: tRNA methyltra 99.0 3.2E-09 7E-14 99.1 12.2 129 40-190 24-161 (247)
130 PLN02781 Probable caffeoyl-CoA 99.0 3.4E-09 7.4E-14 98.5 11.5 92 39-130 51-153 (234)
131 COG3963 Phospholipid N-methylt 99.0 2.4E-09 5.2E-14 92.9 9.4 94 32-131 24-127 (194)
132 TIGR03587 Pse_Me-ase pseudamin 99.0 2.5E-09 5.4E-14 97.4 10.1 70 54-130 41-114 (204)
133 PRK13255 thiopurine S-methyltr 99.0 1.1E-08 2.3E-13 94.2 14.0 80 48-127 29-122 (218)
134 PTZ00146 fibrillarin; Provisio 98.9 5.8E-09 1.3E-13 99.3 11.4 85 43-130 116-211 (293)
135 smart00138 MeTrc Methyltransfe 98.9 5.8E-09 1.3E-13 98.7 11.4 122 37-174 72-241 (264)
136 PRK05031 tRNA (uracil-5-)-meth 98.9 4.3E-09 9.3E-14 103.9 10.8 103 28-132 175-299 (362)
137 PRK05134 bifunctional 3-demeth 98.9 1.1E-08 2.4E-13 94.3 12.9 115 41-174 33-150 (233)
138 TIGR03438 probable methyltrans 98.9 1.2E-08 2.5E-13 98.4 13.3 70 45-116 54-126 (301)
139 TIGR02143 trmA_only tRNA (urac 98.9 4E-09 8.6E-14 103.8 9.9 104 28-133 166-291 (353)
140 PRK06202 hypothetical protein; 98.9 1.3E-08 2.8E-13 94.1 12.6 78 53-134 57-142 (232)
141 TIGR01983 UbiG ubiquinone bios 98.9 1.6E-08 3.4E-13 92.6 12.9 117 40-174 25-148 (224)
142 TIGR02987 met_A_Alw26 type II 98.9 4.4E-09 9.6E-14 108.7 8.7 101 32-134 1-125 (524)
143 COG0116 Predicted N6-adenine-s 98.9 7.3E-09 1.6E-13 101.3 9.3 93 40-132 175-310 (381)
144 KOG3420 Predicted RNA methylas 98.9 2.7E-09 5.8E-14 90.5 5.4 101 30-133 19-126 (185)
145 PF03602 Cons_hypoth95: Conser 98.9 4.4E-09 9.5E-14 94.2 6.8 122 40-176 24-154 (183)
146 PF02475 Met_10: Met-10+ like- 98.9 6.7E-09 1.4E-13 94.1 7.9 109 25-133 70-181 (200)
147 PF09445 Methyltransf_15: RNA 98.9 2.8E-09 6E-14 93.4 5.2 76 58-133 1-81 (163)
148 TIGR00438 rrmJ cell division p 98.9 1.8E-08 4E-13 90.2 10.5 66 52-129 28-106 (188)
149 KOG1500 Protein arginine N-met 98.8 1.2E-08 2.6E-13 97.2 9.4 85 44-129 165-251 (517)
150 PRK04148 hypothetical protein; 98.8 2.4E-08 5.1E-13 84.6 9.7 77 44-128 4-84 (134)
151 TIGR02081 metW methionine bios 98.8 4.2E-08 9E-13 88.3 12.0 77 46-132 5-86 (194)
152 cd02440 AdoMet_MTases S-adenos 98.8 5.5E-08 1.2E-12 75.5 10.6 74 59-133 1-78 (107)
153 KOG4300 Predicted methyltransf 98.8 2E-08 4.3E-13 90.0 8.9 101 56-174 76-181 (252)
154 PRK04457 spermidine synthase; 98.8 4.3E-07 9.3E-12 85.9 18.0 86 44-129 53-144 (262)
155 KOG1499 Protein arginine N-met 98.8 2.3E-08 5E-13 96.2 9.4 79 49-128 53-134 (346)
156 PLN02476 O-methyltransferase 98.8 6.8E-08 1.5E-12 91.7 11.7 92 39-130 101-203 (278)
157 PF05958 tRNA_U5-meth_tr: tRNA 98.8 3E-08 6.6E-13 97.5 9.5 110 27-138 164-295 (352)
158 COG2265 TrmA SAM-dependent met 98.7 7.5E-08 1.6E-12 96.9 12.1 111 27-138 260-379 (432)
159 PRK11783 rlmL 23S rRNA m(2)G24 98.7 3.1E-08 6.8E-13 105.7 10.0 94 40-133 173-315 (702)
160 COG0742 N6-adenine-specific me 98.7 1.4E-07 3E-12 84.1 12.1 123 40-176 25-155 (187)
161 KOG1541 Predicted protein carb 98.7 2.6E-08 5.7E-13 90.1 7.4 91 38-134 30-125 (270)
162 PRK00811 spermidine synthase; 98.7 9E-08 1.9E-12 91.5 10.7 76 55-130 75-159 (283)
163 PF01596 Methyltransf_3: O-met 98.7 4.3E-08 9.3E-13 89.3 7.4 75 55-129 44-129 (205)
164 PF05185 PRMT5: PRMT5 arginine 98.7 5.3E-08 1.2E-12 98.5 8.7 73 57-129 187-266 (448)
165 PF08003 Methyltransf_9: Prote 98.7 1.3E-07 2.7E-12 90.0 10.5 112 46-174 105-218 (315)
166 PRK11933 yebU rRNA (cytosine-C 98.7 3.3E-07 7.1E-12 93.2 13.9 131 46-179 101-247 (470)
167 PRK04338 N(2),N(2)-dimethylgua 98.7 1.2E-07 2.7E-12 94.1 10.5 89 41-130 41-134 (382)
168 KOG3191 Predicted N6-DNA-methy 98.7 9.8E-08 2.1E-12 84.0 8.6 79 56-136 43-125 (209)
169 COG4122 Predicted O-methyltran 98.6 3.3E-07 7.2E-12 84.0 11.8 88 42-129 45-140 (219)
170 COG2521 Predicted archaeal met 98.6 6.4E-08 1.4E-12 88.3 6.5 132 26-175 107-245 (287)
171 PRK13256 thiopurine S-methyltr 98.6 8.5E-07 1.8E-11 81.9 13.9 86 41-127 29-130 (226)
172 KOG1271 Methyltransferases [Ge 98.6 3.2E-07 7E-12 80.8 9.6 89 43-131 50-146 (227)
173 KOG2187 tRNA uracil-5-methyltr 98.6 1.2E-07 2.6E-12 95.1 7.6 112 26-138 349-472 (534)
174 COG4976 Predicted methyltransf 98.6 4.1E-08 8.9E-13 89.3 3.8 80 42-127 111-194 (287)
175 PRK00050 16S rRNA m(4)C1402 me 98.6 1.6E-07 3.5E-12 90.0 8.1 86 41-129 4-98 (296)
176 COG1092 Predicted SAM-dependen 98.6 2.3E-07 5E-12 92.0 8.9 126 38-174 201-335 (393)
177 KOG2899 Predicted methyltransf 98.5 2.9E-07 6.4E-12 84.4 8.5 47 54-100 56-104 (288)
178 PLN02589 caffeoyl-CoA O-methyl 98.5 5.3E-07 1.1E-11 84.4 9.6 89 41-129 64-164 (247)
179 COG2520 Predicted methyltransf 98.5 3.1E-07 6.8E-12 89.3 7.6 107 25-131 157-266 (341)
180 KOG2361 Predicted methyltransf 98.5 4.3E-07 9.3E-12 83.4 7.7 99 27-127 39-150 (264)
181 PLN02366 spermidine synthase 98.5 2.3E-06 5E-11 82.7 13.1 91 42-132 74-176 (308)
182 PF05724 TPMT: Thiopurine S-me 98.5 9.3E-07 2E-11 81.4 9.7 86 41-127 23-122 (218)
183 PF02390 Methyltransf_4: Putat 98.4 6.5E-07 1.4E-11 81.0 8.1 107 58-175 19-133 (195)
184 TIGR00417 speE spermidine synt 98.4 1.3E-06 2.9E-11 82.8 10.4 79 55-133 71-157 (270)
185 PRK03612 spermidine synthase; 98.4 6.8E-07 1.5E-11 92.4 8.8 79 55-133 296-385 (521)
186 COG0144 Sun tRNA and rRNA cyto 98.4 3.1E-06 6.8E-11 83.4 13.1 137 40-179 140-293 (355)
187 PRK01581 speE spermidine synth 98.4 2E-06 4.4E-11 84.3 11.1 78 54-131 148-236 (374)
188 PF05219 DREV: DREV methyltran 98.4 3.7E-06 7.9E-11 78.4 11.5 119 33-176 66-189 (265)
189 COG4076 Predicted RNA methylas 98.4 5.7E-07 1.2E-11 79.6 5.8 72 57-129 33-104 (252)
190 PF03291 Pox_MCEL: mRNA cappin 98.3 3.5E-06 7.6E-11 82.2 10.3 107 56-177 62-188 (331)
191 KOG3010 Methyltransferase [Gen 98.3 1.9E-06 4.1E-11 79.2 7.6 91 42-134 21-113 (261)
192 PLN02232 ubiquinone biosynthes 98.3 1.9E-05 4.2E-10 69.0 13.1 75 82-173 1-79 (160)
193 KOG2915 tRNA(1-methyladenosine 98.3 1.4E-05 3.1E-10 74.6 12.6 89 45-133 94-189 (314)
194 PF05971 Methyltransf_10: Prot 98.3 4.2E-06 9.1E-11 80.1 9.4 95 43-137 84-193 (299)
195 KOG2730 Methylase [General fun 98.2 8.1E-07 1.7E-11 80.5 4.0 101 34-134 71-178 (263)
196 KOG1975 mRNA cap methyltransfe 98.2 2.7E-06 5.9E-11 81.1 7.0 120 43-177 104-239 (389)
197 PF00891 Methyltransf_2: O-met 98.2 1.2E-05 2.5E-10 74.7 11.2 102 46-172 90-196 (241)
198 PF10294 Methyltransf_16: Puta 98.2 9.4E-06 2E-10 72.0 9.6 75 53-128 42-126 (173)
199 TIGR00308 TRM1 tRNA(guanine-26 98.2 1.1E-05 2.3E-10 80.1 10.5 79 58-138 46-130 (374)
200 COG0220 Predicted S-adenosylme 98.2 9.6E-06 2.1E-10 75.0 9.5 106 58-175 50-164 (227)
201 TIGR00478 tly hemolysin TlyA f 98.2 9.7E-06 2.1E-10 75.1 9.4 48 46-93 64-113 (228)
202 PF01189 Nol1_Nop2_Fmu: NOL1/N 98.2 1.1E-05 2.5E-10 77.1 9.9 134 45-180 74-225 (283)
203 PLN02823 spermine synthase 98.1 1.1E-05 2.4E-10 78.8 9.7 75 56-130 103-185 (336)
204 PRK10742 putative methyltransf 98.1 7.8E-06 1.7E-10 76.1 7.5 89 46-134 76-177 (250)
205 PF10672 Methyltrans_SAM: S-ad 98.1 1.2E-05 2.6E-10 76.7 8.5 106 26-133 91-207 (286)
206 COG0286 HsdM Type I restrictio 98.0 1.5E-05 3.3E-10 81.8 8.3 182 29-214 160-378 (489)
207 PF08123 DOT1: Histone methyla 98.0 1.7E-05 3.7E-10 72.3 7.0 90 40-129 26-130 (205)
208 TIGR00006 S-adenosyl-methyltra 98.0 2.7E-05 5.9E-10 74.9 8.7 91 37-129 1-100 (305)
209 PF13679 Methyltransf_32: Meth 97.9 5.1E-05 1.1E-09 64.9 9.0 74 54-127 23-105 (141)
210 KOG1661 Protein-L-isoaspartate 97.9 8.3E-05 1.8E-09 67.2 9.4 92 38-129 62-170 (237)
211 KOG2940 Predicted methyltransf 97.8 3E-05 6.4E-10 70.9 6.1 79 56-137 72-153 (325)
212 PF01728 FtsJ: FtsJ-like methy 97.8 1.6E-05 3.4E-10 70.6 4.1 112 46-175 10-139 (181)
213 TIGR01444 fkbM_fam methyltrans 97.8 4.8E-05 1E-09 64.5 6.8 58 59-117 1-60 (143)
214 PF06080 DUF938: Protein of un 97.8 0.00018 3.8E-09 65.3 10.4 125 35-175 4-143 (204)
215 PRK01544 bifunctional N5-gluta 97.8 0.00011 2.4E-09 75.8 10.0 110 56-176 347-463 (506)
216 PRK11760 putative 23S rRNA C24 97.7 0.0001 2.3E-09 71.6 8.4 67 55-129 210-278 (357)
217 COG0421 SpeE Spermidine syntha 97.7 0.00027 5.9E-09 67.5 11.1 135 58-205 78-227 (282)
218 PRK10611 chemotaxis methyltran 97.7 0.00026 5.7E-09 67.7 10.5 123 37-175 95-262 (287)
219 COG0293 FtsJ 23S rRNA methylas 97.7 0.00031 6.8E-09 63.7 9.9 117 55-189 44-176 (205)
220 KOG2671 Putative RNA methylase 97.6 5.5E-05 1.2E-09 72.9 3.7 112 22-134 175-297 (421)
221 KOG1663 O-methyltransferase [S 97.5 0.0011 2.3E-08 61.0 11.1 92 37-128 54-156 (237)
222 KOG1122 tRNA and rRNA cytosine 97.5 0.00042 9.2E-09 68.5 8.7 128 49-179 234-376 (460)
223 PF01861 DUF43: Protein of unk 97.4 0.0021 4.6E-08 59.6 12.1 142 29-189 15-166 (243)
224 PF01564 Spermine_synth: Sperm 97.4 0.00031 6.7E-09 65.9 6.6 77 55-131 75-160 (246)
225 COG3897 Predicted methyltransf 97.3 0.00023 4.9E-09 63.8 4.4 84 46-132 69-154 (218)
226 PF04816 DUF633: Family of unk 97.3 0.00066 1.4E-08 61.9 7.4 82 60-145 1-87 (205)
227 PF01739 CheR: CheR methyltran 97.3 0.00073 1.6E-08 61.2 7.6 122 37-174 4-174 (196)
228 PF12147 Methyltransf_20: Puta 97.3 0.0046 1E-07 58.8 12.4 75 55-129 134-217 (311)
229 COG1352 CheR Methylase of chem 97.3 0.0036 7.9E-08 59.3 11.7 124 37-176 70-242 (268)
230 KOG3045 Predicted RNA methylas 97.2 0.001 2.2E-08 62.0 7.5 94 44-174 167-263 (325)
231 KOG3987 Uncharacterized conser 97.2 0.00043 9.2E-09 62.6 4.6 66 32-97 85-153 (288)
232 KOG1501 Arginine N-methyltrans 97.2 0.0021 4.6E-08 63.9 9.5 61 59-119 69-130 (636)
233 COG0500 SmtA SAM-dependent met 97.1 0.0065 1.4E-07 48.9 10.8 69 60-130 52-128 (257)
234 PRK00536 speE spermidine synth 97.1 0.0045 9.7E-08 58.5 10.8 75 55-130 71-148 (262)
235 PF05148 Methyltransf_8: Hypot 97.1 0.0014 3.1E-08 59.5 7.1 101 37-174 54-157 (219)
236 KOG3115 Methyltransferase-like 97.1 0.0019 4.1E-08 58.3 7.4 130 56-190 60-198 (249)
237 PF02527 GidB: rRNA small subu 97.0 0.0021 4.5E-08 57.7 7.3 68 59-127 51-121 (184)
238 COG0357 GidB Predicted S-adeno 96.9 0.0023 5E-08 58.7 6.7 70 57-127 68-141 (215)
239 COG0275 Predicted S-adenosylme 96.9 0.0044 9.6E-08 59.2 8.7 78 38-117 5-85 (314)
240 KOG4058 Uncharacterized conser 96.9 0.0017 3.7E-08 55.7 5.2 80 45-124 61-141 (199)
241 PF05891 Methyltransf_PK: AdoM 96.9 0.0026 5.6E-08 58.2 6.8 72 56-128 55-129 (218)
242 PF01795 Methyltransf_5: MraW 96.9 0.002 4.3E-08 62.2 6.3 76 40-117 4-81 (310)
243 PF03059 NAS: Nicotianamine sy 96.9 0.015 3.2E-07 55.3 12.2 71 58-128 122-199 (276)
244 cd00315 Cyt_C5_DNA_methylase C 96.9 0.0021 4.6E-08 61.1 6.2 71 59-136 2-77 (275)
245 PF01269 Fibrillarin: Fibrilla 96.8 0.0067 1.4E-07 55.7 8.4 85 43-130 57-152 (229)
246 KOG2198 tRNA cytosine-5-methyl 96.7 0.01 2.2E-07 58.1 9.9 81 51-132 150-247 (375)
247 COG2384 Predicted SAM-dependen 96.7 0.0067 1.5E-07 55.5 7.9 86 55-144 15-105 (226)
248 TIGR03439 methyl_EasF probable 96.6 0.01 2.2E-07 57.8 9.0 68 46-116 68-143 (319)
249 PF09243 Rsm22: Mitochondrial 96.6 0.0073 1.6E-07 57.5 7.8 61 42-102 19-82 (274)
250 PF01555 N6_N4_Mtase: DNA meth 96.6 0.0075 1.6E-07 54.4 7.4 57 39-96 175-231 (231)
251 PF07942 N2227: N2227-like pro 96.6 0.036 7.7E-07 52.6 12.0 41 56-96 56-96 (270)
252 PRK11524 putative methyltransf 96.5 0.0096 2.1E-07 56.9 8.0 58 41-99 194-251 (284)
253 COG3129 Predicted SAM-dependen 96.5 0.0038 8.3E-08 57.4 4.8 80 56-135 78-167 (292)
254 KOG4589 Cell division protein 96.4 0.013 2.9E-07 52.3 7.5 70 54-135 67-150 (232)
255 KOG3178 Hydroxyindole-O-methyl 96.3 0.014 3.1E-07 56.8 7.9 95 57-173 178-273 (342)
256 PF04445 SAM_MT: Putative SAM- 96.3 0.0093 2E-07 55.3 6.4 86 47-132 64-162 (234)
257 PF07091 FmrO: Ribosomal RNA m 96.3 0.0096 2.1E-07 55.6 6.4 70 55-126 104-176 (251)
258 PF11968 DUF3321: Putative met 96.3 0.0099 2.1E-07 54.3 6.1 99 41-170 32-139 (219)
259 COG1189 Predicted rRNA methyla 96.2 0.02 4.3E-07 53.0 8.1 81 46-132 68-155 (245)
260 PF03141 Methyltransf_29: Puta 96.1 0.0087 1.9E-07 60.8 5.6 79 42-128 99-188 (506)
261 KOG2912 Predicted DNA methylas 96.1 0.0098 2.1E-07 57.1 5.4 92 43-134 87-191 (419)
262 PF00145 DNA_methylase: C-5 cy 96.1 0.011 2.4E-07 56.6 5.9 69 59-135 2-75 (335)
263 COG4262 Predicted spermidine s 96.1 0.0094 2E-07 58.3 5.2 76 55-130 288-374 (508)
264 PRK13699 putative methylase; P 96.0 0.028 6.1E-07 52.0 8.0 60 40-100 148-207 (227)
265 TIGR00497 hsdM type I restrict 95.9 0.023 4.9E-07 58.7 7.7 105 28-133 188-305 (501)
266 KOG1269 SAM-dependent methyltr 95.6 0.016 3.4E-07 57.4 5.0 105 53-174 107-214 (364)
267 PHA01634 hypothetical protein 95.6 0.028 6E-07 47.2 5.4 46 56-101 28-74 (156)
268 KOG2078 tRNA modification enzy 95.5 0.015 3.1E-07 58.0 4.0 90 25-116 218-310 (495)
269 PF11599 AviRa: RRNA methyltra 95.4 0.025 5.3E-07 51.7 5.0 57 43-99 34-98 (246)
270 TIGR00675 dcm DNA-methyltransf 95.4 0.026 5.7E-07 54.8 5.4 69 60-135 1-73 (315)
271 PRK10458 DNA cytosine methylas 95.1 0.055 1.2E-06 55.4 7.0 76 57-135 88-183 (467)
272 PF10237 N6-adenineMlase: Prob 95.0 0.13 2.7E-06 45.2 8.1 135 34-199 2-145 (162)
273 KOG1331 Predicted methyltransf 94.9 0.041 9E-07 52.2 5.0 102 44-171 35-139 (293)
274 PF02636 Methyltransf_28: Puta 94.8 0.11 2.4E-06 48.6 7.7 44 57-100 19-72 (252)
275 COG4798 Predicted methyltransf 94.6 0.042 9E-07 49.5 4.1 113 50-172 42-163 (238)
276 COG1889 NOP1 Fibrillarin-like 94.5 0.32 7E-06 44.2 9.5 84 43-129 60-153 (231)
277 COG1565 Uncharacterized conser 94.5 0.11 2.4E-06 51.0 7.0 65 37-101 47-132 (370)
278 PF04672 Methyltransf_19: S-ad 94.1 0.13 2.8E-06 48.7 6.4 76 41-117 52-133 (267)
279 PF07757 AdoMet_MTase: Predict 94.0 0.058 1.2E-06 44.0 3.4 53 37-89 35-91 (112)
280 KOG1227 Putative methyltransfe 93.9 0.021 4.4E-07 54.6 0.7 71 56-126 194-267 (351)
281 PF04989 CmcI: Cephalosporin h 93.9 0.12 2.6E-06 47.0 5.6 79 34-117 10-97 (206)
282 KOG1596 Fibrillarin and relate 93.8 0.27 5.9E-06 45.8 7.7 78 50-130 150-235 (317)
283 COG0270 Dcm Site-specific DNA 93.7 0.15 3.2E-06 49.8 6.4 72 58-135 4-81 (328)
284 KOG1709 Guanidinoacetate methy 93.7 0.91 2E-05 41.7 10.7 82 43-127 89-175 (271)
285 PF01234 NNMT_PNMT_TEMT: NNMT/ 92.8 0.13 2.8E-06 48.5 4.2 104 56-173 56-197 (256)
286 KOG2651 rRNA adenine N-6-methy 92.1 0.44 9.6E-06 47.1 6.8 42 55-96 152-194 (476)
287 COG1568 Predicted methyltransf 92.0 0.45 9.7E-06 45.2 6.6 136 31-187 125-273 (354)
288 PF13578 Methyltransf_24: Meth 91.7 0.11 2.3E-06 41.6 1.9 69 61-130 1-78 (106)
289 KOG0822 Protein kinase inhibit 91.4 0.44 9.6E-06 48.9 6.2 70 58-128 369-446 (649)
290 KOG1099 SAM-dependent methyltr 90.9 0.72 1.6E-05 42.7 6.6 132 58-208 43-198 (294)
291 PF02005 TRM: N2,N2-dimethylgu 90.8 0.48 1E-05 47.3 5.8 83 56-139 49-138 (377)
292 KOG2352 Predicted spermine/spe 90.5 1.3 2.9E-05 45.1 8.7 72 55-128 46-121 (482)
293 PF06962 rRNA_methylase: Putat 90.3 0.41 8.8E-06 41.0 4.2 53 80-132 1-57 (140)
294 PTZ00357 methyltransferase; Pr 89.9 0.74 1.6E-05 48.9 6.5 70 59-128 703-799 (1072)
295 KOG2360 Proliferation-associat 89.4 0.55 1.2E-05 46.5 4.9 86 46-132 203-295 (413)
296 PF03686 UPF0146: Uncharacteri 89.2 0.84 1.8E-05 38.3 5.2 72 44-130 4-80 (127)
297 COG1064 AdhP Zn-dependent alco 89.2 1 2.2E-05 44.2 6.6 49 50-98 160-210 (339)
298 COG1255 Uncharacterized protei 88.3 1.2 2.6E-05 36.8 5.3 59 57-127 14-76 (129)
299 PF05050 Methyltransf_21: Meth 86.8 1.5 3.2E-05 37.2 5.6 53 62-114 1-61 (167)
300 PF02254 TrkA_N: TrkA-N domain 86.8 1.6 3.5E-05 35.1 5.5 57 65-129 4-70 (116)
301 COG0863 DNA modification methy 86.2 2.9 6.3E-05 39.5 7.7 61 40-101 207-267 (302)
302 PF05206 TRM13: Methyltransfer 86.2 2.4 5.2E-05 40.1 6.9 79 43-122 5-90 (259)
303 PF07279 DUF1442: Protein of u 86.1 2.2 4.7E-05 39.1 6.3 93 34-127 20-121 (218)
304 PRK11524 putative methyltransf 85.8 1.2 2.6E-05 42.5 4.8 28 106-133 8-39 (284)
305 PRK05867 short chain dehydroge 85.8 15 0.00033 33.5 12.1 74 56-131 8-96 (253)
306 PRK07063 short chain dehydroge 85.7 19 0.0004 33.0 12.7 75 56-130 6-95 (260)
307 PRK08339 short chain dehydroge 84.1 25 0.00054 32.6 12.8 73 56-129 7-93 (263)
308 PRK08277 D-mannonate oxidoredu 84.0 25 0.00054 32.5 12.9 73 56-130 9-96 (278)
309 PRK06172 short chain dehydroge 83.2 24 0.00052 32.1 12.2 74 56-131 6-94 (253)
310 KOG1201 Hydroxysteroid 17-beta 82.9 21 0.00045 34.4 11.7 112 56-173 37-170 (300)
311 PRK08862 short chain dehydroge 82.9 25 0.00055 31.9 12.2 72 56-129 4-91 (227)
312 PRK07814 short chain dehydroge 82.9 26 0.00057 32.2 12.5 72 56-130 9-96 (263)
313 PRK08267 short chain dehydroge 82.9 24 0.00051 32.3 12.1 70 58-131 2-87 (260)
314 PRK07062 short chain dehydroge 82.9 27 0.00058 32.0 12.5 76 56-131 7-97 (265)
315 PF02086 MethyltransfD12: D12 82.3 2 4.3E-05 39.8 4.6 57 43-99 7-63 (260)
316 KOG2920 Predicted methyltransf 82.2 1.4 3.1E-05 41.9 3.6 37 55-91 115-152 (282)
317 PRK06124 gluconate 5-dehydroge 82.2 35 0.00077 31.0 13.0 74 56-131 10-98 (256)
318 PRK07097 gluconate 5-dehydroge 82.0 32 0.00068 31.7 12.6 74 56-131 9-97 (265)
319 PRK12481 2-deoxy-D-gluconate 3 81.9 22 0.00047 32.6 11.5 72 56-131 7-93 (251)
320 PF11899 DUF3419: Protein of u 81.9 3.8 8.3E-05 40.9 6.6 57 40-100 22-79 (380)
321 PRK08303 short chain dehydroge 81.8 22 0.00048 34.0 11.8 72 56-129 7-103 (305)
322 PRK05866 short chain dehydroge 81.7 34 0.00073 32.4 12.9 73 57-131 40-127 (293)
323 PRK09072 short chain dehydroge 81.4 38 0.00081 31.1 12.9 73 56-131 4-90 (263)
324 PRK07109 short chain dehydroge 81.2 22 0.00047 34.5 11.6 74 56-131 7-95 (334)
325 KOG0024 Sorbitol dehydrogenase 81.1 4.4 9.5E-05 39.5 6.4 50 47-96 160-212 (354)
326 PRK08265 short chain dehydroge 80.8 33 0.00071 31.6 12.3 71 56-131 5-90 (261)
327 PRK09242 tropinone reductase; 80.6 44 0.00095 30.4 13.0 76 56-131 8-98 (257)
328 COG1748 LYS9 Saccharopine dehy 79.9 6.3 0.00014 39.5 7.4 79 58-143 2-90 (389)
329 PRK13699 putative methylase; P 79.9 2.1 4.5E-05 39.6 3.8 27 107-133 2-32 (227)
330 COG2933 Predicted SAM-dependen 79.7 3.7 8E-05 38.9 5.3 68 54-129 209-278 (358)
331 PRK06125 short chain dehydroge 79.2 47 0.001 30.3 12.8 74 56-130 6-90 (259)
332 PRK06139 short chain dehydroge 79.0 36 0.00078 33.0 12.4 74 56-131 6-94 (330)
333 COG1063 Tdh Threonine dehydrog 78.2 6.2 0.00014 38.7 6.8 65 34-98 144-213 (350)
334 PRK07831 short chain dehydroge 78.2 53 0.0012 30.0 12.8 75 56-131 16-107 (262)
335 PRK08085 gluconate 5-dehydroge 78.1 54 0.0012 29.8 12.8 74 56-131 8-96 (254)
336 PRK07478 short chain dehydroge 78.0 49 0.0011 30.0 12.5 74 56-131 5-93 (254)
337 PRK07454 short chain dehydroge 77.5 54 0.0012 29.4 12.8 73 56-131 5-93 (241)
338 PRK05876 short chain dehydroge 77.3 54 0.0012 30.6 12.7 74 56-131 5-93 (275)
339 cd08283 FDH_like_1 Glutathione 76.1 8.8 0.00019 37.9 7.3 48 50-97 178-228 (386)
340 COG1867 TRM1 N2,N2-dimethylgua 75.5 19 0.00041 35.7 9.1 81 57-139 53-138 (380)
341 PRK08340 glucose-1-dehydrogena 74.9 12 0.00026 34.3 7.5 69 59-130 2-85 (259)
342 PRK07523 gluconate 5-dehydroge 74.8 66 0.0014 29.2 12.7 74 56-132 9-98 (255)
343 PRK06935 2-deoxy-D-gluconate 3 74.7 54 0.0012 29.9 11.8 73 56-131 14-101 (258)
344 PRK05854 short chain dehydroge 74.2 15 0.00032 35.2 8.1 75 56-130 13-102 (313)
345 PLN03209 translocon at the inn 74.2 16 0.00035 38.5 8.8 79 51-130 74-168 (576)
346 COG0569 TrkA K+ transport syst 73.9 21 0.00046 32.8 8.7 65 59-130 2-75 (225)
347 PRK09496 trkA potassium transp 73.8 8.4 0.00018 38.8 6.6 83 40-130 212-306 (453)
348 PRK03659 glutathione-regulated 73.0 5 0.00011 42.5 4.8 62 58-129 401-472 (601)
349 PRK08226 short chain dehydroge 73.0 75 0.0016 28.9 12.4 73 56-131 5-92 (263)
350 TIGR03206 benzo_BadH 2-hydroxy 72.5 21 0.00045 32.3 8.3 73 57-131 3-90 (250)
351 COG5459 Predicted rRNA methyla 72.3 46 0.00099 33.1 10.6 41 55-95 112-155 (484)
352 PRK08643 acetoin reductase; Va 72.1 21 0.00046 32.5 8.4 73 58-132 3-90 (256)
353 PRK12823 benD 1,6-dihydroxycyc 71.8 79 0.0017 28.7 12.2 72 56-130 7-93 (260)
354 PRK05872 short chain dehydroge 70.9 20 0.00043 33.9 8.1 73 56-131 8-95 (296)
355 PRK07066 3-hydroxybutyryl-CoA 70.4 51 0.0011 32.1 10.8 40 58-97 8-49 (321)
356 cd01065 NAD_bind_Shikimate_DH 70.4 42 0.00091 28.1 9.2 74 55-133 17-93 (155)
357 KOG2793 Putative N2,N2-dimethy 70.3 13 0.00029 34.9 6.4 40 57-97 87-127 (248)
358 TIGR01963 PHB_DH 3-hydroxybuty 70.2 19 0.0004 32.6 7.5 69 59-130 3-87 (255)
359 PRK08589 short chain dehydroge 70.0 23 0.00049 32.9 8.1 73 56-131 5-92 (272)
360 PRK08278 short chain dehydroge 69.6 70 0.0015 29.6 11.4 74 56-131 5-100 (273)
361 KOG1253 tRNA methyltransferase 69.5 3.4 7.4E-05 42.3 2.5 86 55-141 108-202 (525)
362 PRK08251 short chain dehydroge 69.2 26 0.00056 31.7 8.2 73 57-130 2-90 (248)
363 PLN02989 cinnamyl-alcohol dehy 69.2 18 0.00038 34.5 7.4 74 56-130 4-86 (325)
364 PRK12826 3-ketoacyl-(acyl-carr 69.0 86 0.0019 28.0 12.3 74 56-132 5-94 (251)
365 PF00106 adh_short: short chai 68.5 27 0.00059 29.3 7.7 72 59-132 2-91 (167)
366 PRK05786 fabG 3-ketoacyl-(acyl 68.2 29 0.00062 31.1 8.2 72 56-130 4-90 (238)
367 PRK07791 short chain dehydroge 68.0 27 0.00058 32.9 8.2 74 56-131 5-102 (286)
368 PRK05875 short chain dehydroge 67.9 1E+02 0.0022 28.4 12.7 75 56-130 6-95 (276)
369 PRK07677 short chain dehydroge 67.5 28 0.0006 31.7 8.1 71 58-130 2-87 (252)
370 PRK07533 enoyl-(acyl carrier p 67.5 24 0.00051 32.6 7.6 73 56-131 9-98 (258)
371 PRK14106 murD UDP-N-acetylmura 67.3 28 0.0006 35.1 8.7 83 56-142 4-89 (450)
372 PRK10669 putative cation:proto 67.2 8.8 0.00019 40.2 5.1 62 58-129 418-489 (558)
373 PRK06197 short chain dehydroge 67.1 28 0.00061 32.9 8.2 75 56-130 15-104 (306)
374 PRK03369 murD UDP-N-acetylmura 67.0 23 0.0005 36.4 8.1 81 55-143 10-92 (488)
375 PRK07326 short chain dehydroge 67.0 26 0.00057 31.3 7.7 58 56-117 5-66 (237)
376 PRK06180 short chain dehydroge 67.0 1.1E+02 0.0023 28.4 12.2 70 57-131 4-88 (277)
377 PRK12939 short chain dehydroge 66.4 97 0.0021 27.7 12.3 73 56-131 6-94 (250)
378 TIGR03201 dearomat_had 6-hydro 66.2 21 0.00046 34.5 7.3 46 51-96 161-208 (349)
379 PRK06914 short chain dehydroge 66.2 34 0.00073 31.7 8.5 74 57-130 3-90 (280)
380 COG3510 CmcI Cephalosporin hyd 65.6 15 0.00034 33.3 5.5 79 33-117 46-130 (237)
381 PRK08945 putative oxoacyl-(acy 65.3 1E+02 0.0023 27.7 12.6 73 55-129 10-100 (247)
382 cd08254 hydroxyacyl_CoA_DH 6-h 65.1 21 0.00046 33.7 7.0 45 52-96 161-207 (338)
383 PRK06196 oxidoreductase; Provi 65.0 1.2E+02 0.0027 28.6 12.3 70 56-131 25-109 (315)
384 cd00401 AdoHcyase S-adenosyl-L 64.7 26 0.00056 35.5 7.7 56 41-96 185-243 (413)
385 TIGR02632 RhaD_aldol-ADH rhamn 64.5 1.1E+02 0.0024 32.9 13.0 77 56-132 413-504 (676)
386 PRK06720 hypothetical protein; 64.5 42 0.00091 29.3 8.2 76 56-133 15-105 (169)
387 KOG3924 Putative protein methy 64.4 8 0.00017 38.7 3.8 89 40-128 176-279 (419)
388 PRK06182 short chain dehydroge 64.2 1.1E+02 0.0024 28.1 11.6 67 57-132 3-85 (273)
389 PRK07035 short chain dehydroge 64.1 37 0.00081 30.7 8.2 74 56-131 7-95 (252)
390 PRK08993 2-deoxy-D-gluconate 3 63.8 1.1E+02 0.0024 27.8 11.3 72 56-131 9-95 (253)
391 PRK12829 short chain dehydroge 63.4 46 0.00099 30.2 8.7 72 55-131 9-96 (264)
392 PRK06841 short chain dehydroge 63.2 1.2E+02 0.0025 27.4 12.2 72 56-132 14-100 (255)
393 PRK07774 short chain dehydroge 62.8 45 0.00097 30.1 8.5 73 56-131 5-93 (250)
394 PRK07890 short chain dehydroge 62.5 42 0.0009 30.4 8.2 73 56-130 4-91 (258)
395 COG0300 DltE Short-chain dehyd 62.3 1.4E+02 0.0031 28.3 13.9 117 56-173 5-140 (265)
396 TIGR01832 kduD 2-deoxy-D-gluco 62.3 1.2E+02 0.0026 27.2 12.3 72 56-131 4-90 (248)
397 PRK07024 short chain dehydroge 62.0 39 0.00085 30.9 8.0 70 58-130 3-87 (257)
398 PRK06114 short chain dehydroge 61.3 1.3E+02 0.0028 27.3 12.4 73 56-131 7-96 (254)
399 PRK06113 7-alpha-hydroxysteroi 61.1 45 0.00098 30.4 8.2 73 56-130 10-97 (255)
400 PRK09424 pntA NAD(P) transhydr 61.0 19 0.00041 37.5 6.1 43 54-96 162-206 (509)
401 PRK06505 enoyl-(acyl carrier p 60.8 35 0.00076 31.8 7.5 72 56-130 6-94 (271)
402 PF04378 RsmJ: Ribosomal RNA s 60.7 13 0.00028 34.9 4.4 74 61-137 62-141 (245)
403 cd05188 MDR Medium chain reduc 60.6 32 0.00069 31.0 7.1 42 55-96 133-176 (271)
404 PRK08217 fabG 3-ketoacyl-(acyl 60.5 49 0.0011 29.7 8.3 72 56-130 4-91 (253)
405 PF03721 UDPG_MGDP_dh_N: UDP-g 60.2 8.7 0.00019 34.2 3.1 37 60-96 3-41 (185)
406 PRK07417 arogenate dehydrogena 60.1 45 0.00097 31.5 8.1 64 59-131 2-67 (279)
407 PRK07984 enoyl-(acyl carrier p 59.9 40 0.00086 31.3 7.7 73 56-131 5-94 (262)
408 PRK06500 short chain dehydroge 59.8 47 0.001 29.8 8.0 71 56-131 5-90 (249)
409 PLN02253 xanthoxin dehydrogena 59.4 46 0.001 30.8 8.1 71 56-130 17-103 (280)
410 PF07669 Eco57I: Eco57I restri 59.4 3.9 8.4E-05 33.0 0.6 15 121-135 2-16 (106)
411 PRK05855 short chain dehydroge 59.3 1.5E+02 0.0033 30.3 12.6 73 57-131 315-402 (582)
412 PRK07201 short chain dehydroge 59.0 1.5E+02 0.0032 31.3 12.6 73 57-131 371-458 (657)
413 PRK03562 glutathione-regulated 58.8 14 0.0003 39.4 4.8 64 57-128 400-471 (621)
414 PRK06194 hypothetical protein; 58.8 50 0.0011 30.6 8.2 74 57-132 6-94 (287)
415 TIGR02822 adh_fam_2 zinc-bindi 58.6 37 0.0008 32.7 7.4 48 50-97 159-208 (329)
416 KOG1098 Putative SAM-dependent 58.5 8.6 0.00019 40.6 3.0 35 54-88 42-79 (780)
417 PRK06079 enoyl-(acyl carrier p 58.4 41 0.00089 30.8 7.4 71 56-131 6-93 (252)
418 PRK09496 trkA potassium transp 58.4 34 0.00073 34.4 7.4 63 59-130 2-74 (453)
419 TIGR02415 23BDH acetoin reduct 58.2 53 0.0011 29.7 8.1 71 59-132 2-88 (254)
420 PRK08213 gluconate 5-dehydroge 57.7 52 0.0011 30.0 8.0 73 56-131 11-99 (259)
421 TIGR01081 mpl UDP-N-acetylmura 57.6 19 0.00042 36.4 5.5 74 64-143 9-82 (448)
422 TIGR02818 adh_III_F_hyde S-(hy 57.3 37 0.0008 33.2 7.3 47 50-96 179-228 (368)
423 PRK08690 enoyl-(acyl carrier p 57.1 41 0.00089 31.0 7.3 73 56-131 5-94 (261)
424 PRK07666 fabG 3-ketoacyl-(acyl 57.0 54 0.0012 29.4 7.9 72 57-131 7-94 (239)
425 PRK07231 fabG 3-ketoacyl-(acyl 56.7 62 0.0013 29.0 8.3 72 57-131 5-91 (251)
426 PRK06949 short chain dehydroge 56.5 60 0.0013 29.4 8.2 72 56-130 8-95 (258)
427 PLN02662 cinnamyl-alcohol dehy 56.5 44 0.00096 31.5 7.5 73 57-130 4-85 (322)
428 COG4301 Uncharacterized conser 56.4 38 0.00082 32.1 6.5 64 52-116 74-144 (321)
429 KOG2782 Putative SAM dependent 56.3 12 0.00025 34.7 3.2 56 42-97 29-86 (303)
430 PRK06200 2,3-dihydroxy-2,3-dih 55.9 53 0.0011 30.1 7.8 71 56-131 5-90 (263)
431 PRK06484 short chain dehydroge 55.8 2.1E+02 0.0045 29.2 12.8 71 56-131 4-89 (520)
432 PLN02780 ketoreductase/ oxidor 55.5 46 0.001 32.0 7.5 61 56-116 52-115 (320)
433 PRK13394 3-hydroxybutyrate deh 55.4 63 0.0014 29.2 8.2 74 56-131 6-94 (262)
434 KOG1562 Spermidine synthase [A 55.2 55 0.0012 31.7 7.6 76 54-129 119-203 (337)
435 PRK12748 3-ketoacyl-(acyl-carr 55.1 1.6E+02 0.0035 26.6 12.0 72 57-131 5-105 (256)
436 KOG3350 Uncharacterized conser 54.9 1.6E+02 0.0035 26.5 10.6 136 34-201 50-196 (217)
437 PRK07102 short chain dehydroge 54.6 59 0.0013 29.3 7.8 71 58-130 2-85 (243)
438 PRK00141 murD UDP-N-acetylmura 54.6 66 0.0014 32.9 8.8 85 52-143 10-96 (473)
439 PRK01710 murD UDP-N-acetylmura 54.4 47 0.001 33.8 7.7 83 57-143 14-99 (458)
440 COG5379 BtaA S-adenosylmethion 54.3 34 0.00074 33.1 6.0 49 51-99 58-106 (414)
441 COG0771 MurD UDP-N-acetylmuram 54.2 48 0.001 33.9 7.6 84 57-144 7-92 (448)
442 KOG1205 Predicted dehydrogenas 54.0 50 0.0011 31.6 7.3 77 56-132 11-102 (282)
443 PRK07904 short chain dehydroge 53.7 61 0.0013 29.8 7.7 76 55-131 6-97 (253)
444 PRK08324 short chain dehydroge 53.7 54 0.0012 35.2 8.4 74 56-132 421-509 (681)
445 TIGR01082 murC UDP-N-acetylmur 53.5 23 0.0005 35.9 5.2 71 66-144 9-81 (448)
446 KOG0725 Reductases with broad 53.1 2E+02 0.0044 27.1 11.5 78 56-133 7-101 (270)
447 PRK06181 short chain dehydroge 52.7 75 0.0016 28.9 8.2 69 58-129 2-86 (263)
448 PRK08703 short chain dehydroge 52.6 1.7E+02 0.0037 26.1 12.4 60 56-116 5-67 (239)
449 PRK09186 flagellin modificatio 52.6 74 0.0016 28.7 8.1 74 56-129 3-91 (256)
450 PRK05650 short chain dehydroge 52.6 71 0.0015 29.4 8.1 71 59-131 2-87 (270)
451 PLN02668 indole-3-acetate carb 52.6 9.4 0.0002 38.2 2.2 20 57-76 64-83 (386)
452 PRK08416 7-alpha-hydroxysteroi 52.3 1.9E+02 0.004 26.4 11.9 72 56-129 7-95 (260)
453 PRK09880 L-idonate 5-dehydroge 52.3 55 0.0012 31.5 7.5 47 50-96 163-212 (343)
454 PRK07067 sorbitol dehydrogenas 52.0 69 0.0015 29.1 7.8 69 57-130 6-89 (257)
455 TIGR00507 aroE shikimate 5-deh 52.0 1.1E+02 0.0025 28.5 9.4 72 55-132 115-189 (270)
456 KOG2352 Predicted spermine/spe 51.6 9.1 0.0002 39.2 1.9 59 57-116 296-356 (482)
457 cd08281 liver_ADH_like1 Zinc-d 51.5 48 0.001 32.4 7.0 48 49-96 184-234 (371)
458 PRK01438 murD UDP-N-acetylmura 51.2 1E+02 0.0022 31.3 9.6 81 56-141 15-98 (480)
459 PRK06138 short chain dehydroge 51.1 79 0.0017 28.4 8.0 73 56-131 4-91 (252)
460 PLN03154 putative allyl alcoho 51.0 54 0.0012 31.8 7.3 48 50-97 152-202 (348)
461 PRK12743 oxidoreductase; Provi 50.9 77 0.0017 28.9 7.9 72 57-131 2-90 (256)
462 COG2961 ComJ Protein involved 50.6 40 0.00086 31.8 5.7 73 61-136 93-171 (279)
463 PRK12859 3-ketoacyl-(acyl-carr 50.5 2E+02 0.0043 26.2 12.6 75 56-132 5-107 (256)
464 KOG2798 Putative trehalase [Ca 50.4 18 0.00039 35.2 3.6 37 57-93 151-187 (369)
465 TIGR03366 HpnZ_proposed putati 50.0 51 0.0011 30.7 6.7 47 50-96 114-163 (280)
466 PF03492 Methyltransf_7: SAM d 50.0 37 0.0008 33.2 5.9 23 54-76 14-36 (334)
467 PRK12548 shikimate 5-dehydroge 49.8 1.1E+02 0.0024 29.0 9.1 73 56-131 125-209 (289)
468 cd08237 ribitol-5-phosphate_DH 49.6 42 0.0009 32.4 6.2 44 53-96 160-207 (341)
469 TIGR03451 mycoS_dep_FDH mycoth 49.5 49 0.0011 32.0 6.7 47 50-96 170-219 (358)
470 PRK07576 short chain dehydroge 49.4 90 0.002 28.7 8.2 71 56-129 8-94 (264)
471 PLN02819 lysine-ketoglutarate 49.3 49 0.0011 37.5 7.3 82 57-144 569-671 (1042)
472 KOG0022 Alcohol dehydrogenase, 49.0 44 0.00096 32.7 6.0 51 47-97 183-236 (375)
473 PF00107 ADH_zinc_N: Zinc-bind 49.0 24 0.00053 28.5 3.8 32 66-97 1-33 (130)
474 COG0099 RpsM Ribosomal protein 48.9 30 0.00064 28.8 4.1 34 319-352 27-61 (121)
475 KOG2811 Uncharacterized conser 48.9 47 0.001 33.1 6.2 65 57-123 183-252 (420)
476 PRK06603 enoyl-(acyl carrier p 48.8 84 0.0018 28.9 7.9 73 56-131 7-96 (260)
477 PLN02896 cinnamyl-alcohol dehy 48.7 77 0.0017 30.6 7.9 71 56-130 9-88 (353)
478 cd01078 NAD_bind_H4MPT_DH NADP 48.7 68 0.0015 28.3 7.0 74 56-132 27-108 (194)
479 PRK12384 sorbitol-6-phosphate 48.5 91 0.002 28.3 8.0 73 58-130 3-90 (259)
480 PRK06484 short chain dehydroge 48.4 72 0.0016 32.6 8.0 70 56-130 268-352 (520)
481 PRK07889 enoyl-(acyl carrier p 48.1 54 0.0012 30.1 6.5 71 56-131 6-95 (256)
482 PRK08415 enoyl-(acyl carrier p 47.9 86 0.0019 29.3 7.9 73 56-131 4-93 (274)
483 PF02153 PDH: Prephenate dehyd 47.7 34 0.00073 32.0 5.0 60 70-138 1-62 (258)
484 PRK09291 short chain dehydroge 47.6 93 0.002 28.1 7.9 72 58-131 3-83 (257)
485 TIGR03325 BphB_TodD cis-2,3-di 47.1 84 0.0018 28.7 7.6 69 56-129 4-87 (262)
486 TIGR01289 LPOR light-dependent 47.1 93 0.002 29.7 8.1 73 57-131 3-91 (314)
487 PLN02740 Alcohol dehydrogenase 47.0 54 0.0012 32.2 6.6 47 50-96 192-241 (381)
488 cd08255 2-desacetyl-2-hydroxye 46.7 72 0.0016 29.3 7.1 48 50-97 91-141 (277)
489 PRK03803 murD UDP-N-acetylmura 46.7 76 0.0016 32.0 7.8 85 55-143 4-90 (448)
490 PLN02166 dTDP-glucose 4,6-dehy 46.6 61 0.0013 32.9 7.1 67 56-127 119-190 (436)
491 PRK07074 short chain dehydroge 46.5 1E+02 0.0022 27.9 8.0 69 58-130 3-86 (257)
492 TIGR00027 mthyl_TIGR00027 meth 46.3 1.9E+02 0.0041 27.2 9.8 73 42-115 67-142 (260)
493 PRK08159 enoyl-(acyl carrier p 46.1 54 0.0012 30.5 6.2 73 56-131 9-98 (272)
494 PRK06997 enoyl-(acyl carrier p 46.0 70 0.0015 29.5 6.9 72 56-130 5-93 (260)
495 PRK05993 short chain dehydroge 46.0 86 0.0019 29.1 7.5 67 57-131 4-86 (277)
496 PRK07502 cyclohexadienyl dehyd 45.6 1E+02 0.0023 29.3 8.2 66 58-131 7-76 (307)
497 PRK08594 enoyl-(acyl carrier p 45.6 85 0.0018 28.9 7.4 71 56-130 6-96 (257)
498 PRK05599 hypothetical protein; 45.5 97 0.0021 28.2 7.7 71 59-131 2-87 (246)
499 PRK07060 short chain dehydroge 45.1 1.1E+02 0.0023 27.4 7.8 70 56-132 8-88 (245)
500 PRK12429 3-hydroxybutyrate deh 44.9 1.2E+02 0.0026 27.2 8.2 72 57-131 4-91 (258)
No 1
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=100.00 E-value=1.7e-61 Score=441.91 Aligned_cols=313 Identities=60% Similarity=0.968 Sum_probs=286.1
Q ss_pred CCCcccccccccCCCCCCCC--CCCCccccccccCCCcccccCHHHHHHHHHHcCCCCCCEEEEEcCcccHHHHHHHHcC
Q 018261 1 MAGGKIRKEKGKQKSGPYQG--QGLGAGGISFHKSKGQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEAG 78 (359)
Q Consensus 1 ~~~~~~~~~~~~~~~~~y~~--~~~~~~~~~~~k~~GQ~fl~d~~v~~~iv~~~~~~~~~~VLDIGcGtG~lt~~La~~~ 78 (359)
|+.|||..+..++++++-.+ +-.-..+..|+|.+|||.+.++.+++.|++.+++.+++.|||||||||++|..|++.|
T Consensus 1 ~~mgk~~~~~~~~~ss~~~~~~~~~~~~~~kfnkd~GQHilkNp~v~~~I~~ka~~k~tD~VLEvGPGTGnLT~~lLe~~ 80 (315)
T KOG0820|consen 1 KHLGKISKCGLSRKSSRAWPEFRNPNSGGSKFNKDFGQHILKNPLVIDQIVEKADLKPTDVVLEVGPGTGNLTVKLLEAG 80 (315)
T ss_pred CCcchhccccccccCCccchhhccccccCcccccccchhhhcCHHHHHHHHhccCCCCCCEEEEeCCCCCHHHHHHHHhc
Confidence 56788887776666654333 1222558999999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEeCCHHHHHHHHHHhhcCCCCCCeEEEEccccCCCCCCCcccccccccccchHHHHHHHhcCchhhHHHHHHHHH
Q 018261 79 KMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTDLPYFDICVANIPYQISSPLTFKLLFHQPAFRCAIIMFQKE 158 (359)
Q Consensus 79 ~~V~avDid~~~i~~a~~~~~~~~~~~~v~~i~~D~~~~~l~~fD~VvsNlPy~i~s~ii~~ll~~~~~~~~~~~~~qkE 158 (359)
++|+|+|+||+|++.+.++.+..+.++++++++||+++.++|.||.||+|+||+|++|.++++|.|.+.++++++|+|+|
T Consensus 81 kkVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK~d~P~fd~cVsNlPyqISSp~vfKLL~~~~~fr~AvlmfQ~E 160 (315)
T KOG0820|consen 81 KKVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLKTDLPRFDGCVSNLPYQISSPLVFKLLLHRPVFRCAVLMFQRE 160 (315)
T ss_pred CeEEEEecCcHHHHHHHHHhcCCCccceeeEEecccccCCCcccceeeccCCccccCHHHHHhcCCCCCcceeeeehhhh
Confidence 99999999999999999999988878899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhccCCCeeEEeecchhhhHHhhhhhhccCCCCccCCCCcceeEEEEeeCCCCCCCChHHHHHHHHHHhcCcchHH
Q 018261 159 FAMRLVAQPGDKLYCRLSVNTQLHARVSHLLKVGKNNFRPPPKVDSSVVRIEPRKPRPQVNPVEWDGFLRICFIRKNKTL 238 (359)
Q Consensus 159 ~a~Rlv~kpGg~~y~~lsv~~q~~~~v~~l~~v~~~~F~P~P~V~S~vv~l~~~~~~~~~~~~~~~~lvr~~F~~rrKtl 238 (359)
+|.|++++||...|+++++++|+|+.+.+++.|+++.|.|+|+|+|+++++.+++|++++++.+|.+++|.||.+++||+
T Consensus 161 fa~RLva~pgd~~Ycrlsin~q~~a~v~~i~KVgknnFrPpPkVessvVriepk~P~pp~~~~ewdg~lri~F~rkNktl 240 (315)
T KOG0820|consen 161 FALRLVARPGDSLYCRLSINVQLLARVTHIMKVGKNNFRPPPKVESSVVRIEPKNPRPPVDFHEWDGLLRICFLRKNKTL 240 (315)
T ss_pred hhhhhccCCCCchhceeehhhHHhhcchhheeecccccCCCCccccceeEeecCCCCCccchHHHHHHHHHHHHHHhHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhchhhHHHHHHHHHHHHHHhhhccCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCcchhh
Q 018261 239 SSIFRLKNVLSMLEKNYRTLQALQSSQNSSLGNTEIGTDTPSLGDSNGDQSMGVDDGSDDEMDVEDDDGDSDVEGEVSEF 318 (359)
Q Consensus 239 ~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (359)
.+.|+..++++.++++|..++..+. .+.+++ ...
T Consensus 241 ~a~fk~~~v~~~ie~n~~~~~s~~n-----------------------------------~~~~~~-----------~~~ 274 (315)
T KOG0820|consen 241 MAPFKSSSVLQKIEKNYKKRESLDN-----------------------------------IMIDLD-----------FNL 274 (315)
T ss_pred hcchhhhHHHHHhhhcccccccccc-----------------------------------cccccc-----------cch
Confidence 9999999999999999977653211 111111 127
Q ss_pred HHHHHHHHHhCCCCCchhccCCHHHHHHHHHHHhhcCCccC
Q 018261 319 KDKVLAVLREGQFEEKRASKLTQQEFLYLLSLFNKAGIHFS 359 (359)
Q Consensus 319 ~~~i~~~l~~~~~~~~r~~~l~~~~~~~l~~~~~~~gi~f~ 359 (359)
+++|..+|...++..+||++||++||++|+.+|+++||||.
T Consensus 275 ~~~~~~il~~~~~~~~Ra~k~~~~DFlrLL~~f~~~~Ihf~ 315 (315)
T KOG0820|consen 275 KPKIYNILFAGLLADKRARKMTVDDFLRLLLAFNAVGIHFQ 315 (315)
T ss_pred hHHHHHHHHhcchhhcccccCCHHHHHHHhhhhhhcCcccC
Confidence 89999999999999999999999999999999999999995
No 2
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=100.00 E-value=1.3e-60 Score=455.44 Aligned_cols=290 Identities=61% Similarity=1.032 Sum_probs=262.2
Q ss_pred ccccccccCCCcccccCHHHHHHHHHHcCCCCCCEEEEEcCcccHHHHHHHHcCCeEEEEeCCHHHHHHHHHHhhcCCCC
Q 018261 25 AGGISFHKSKGQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEAGKMVIAVELDSRMVLELQRRFQSTPYS 104 (359)
Q Consensus 25 ~~~~~~~k~~GQ~fl~d~~v~~~iv~~~~~~~~~~VLDIGcGtG~lt~~La~~~~~V~avDid~~~i~~a~~~~~~~~~~ 104 (359)
+++++++|++|||||+|+.++++|++.+.+.++++|||||||+|.+|..|++.+.+|+|+|+|++|++.+++++...+..
T Consensus 5 ~~~~~~kk~~GQnFL~d~~i~~~Iv~~~~~~~~~~VLEIG~G~G~LT~~Ll~~~~~V~avEiD~~li~~l~~~~~~~~~~ 84 (294)
T PTZ00338 5 KSGMVFNKKFGQHILKNPLVLDKIVEKAAIKPTDTVLEIGPGTGNLTEKLLQLAKKVIAIEIDPRMVAELKKRFQNSPLA 84 (294)
T ss_pred cCCcCcCCCCCccccCCHHHHHHHHHhcCCCCcCEEEEecCchHHHHHHHHHhCCcEEEEECCHHHHHHHHHHHHhcCCC
Confidence 66999999999999999999999999999999999999999999999999998889999999999999999998765434
Q ss_pred CCeEEEEccccCCCCCCCcccccccccccchHHHHHHHhcCchhhHHHHHHHHHHHHHHhccCCCeeEEeecchhhhHHh
Q 018261 105 NRLKVIQGDVLKTDLPYFDICVANIPYQISSPLTFKLLFHQPAFRCAIIMFQKEFAMRLVAQPGDKLYCRLSVNTQLHAR 184 (359)
Q Consensus 105 ~~v~~i~~D~~~~~l~~fD~VvsNlPy~i~s~ii~~ll~~~~~~~~~~~~~qkE~a~Rlv~kpGg~~y~~lsv~~q~~~~ 184 (359)
++++++++|+++.+++.||+||+|+||+|++|++++++++...+..+++|+|+|+|+|++++||.+.|+.+|+..|++++
T Consensus 85 ~~v~ii~~Dal~~~~~~~d~VvaNlPY~Istpil~~ll~~~~~~~~~vlm~QkEvA~Rl~A~pg~k~y~~LSv~~q~~~~ 164 (294)
T PTZ00338 85 SKLEVIEGDALKTEFPYFDVCVANVPYQISSPLVFKLLAHRPLFRCAVLMFQKEFALRLLAQPGDELYCRLSVNTQLLCR 164 (294)
T ss_pred CcEEEEECCHhhhcccccCEEEecCCcccCcHHHHHHHhcCCCCceeeeeehHHHHHHHhcCCCCcccCHHHHHHHHHhc
Confidence 58999999999988888999999999999999999999887788899999999999999999999999999999999999
Q ss_pred hhhhhccCCCCccCCCCcceeEEEEeeCCCCCCCChHHHHHHHHHHhcCcchHHHhhhchhhHHHHHHHHHHHHHHhhhc
Q 018261 185 VSHLLKVGKNNFRPPPKVDSSVVRIEPRKPRPQVNPVEWDGFLRICFIRKNKTLSSIFRLKNVLSMLEKNYRTLQALQSS 264 (359)
Q Consensus 185 v~~l~~v~~~~F~P~P~V~S~vv~l~~~~~~~~~~~~~~~~lvr~~F~~rrKtl~~~l~~~~~~~~l~~~~~~~~~~~~~ 264 (359)
++.++.||+++|+|+|+|+|+|+++.|+...+..+++.|+.+++.+|.+|||||+|+|++...+..++.+|..+++..+.
T Consensus 165 ~~~~~~V~~~~F~P~PkVdSavv~l~~~~~~~~~~~~~~~~~v~~~F~~rrK~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 244 (294)
T PTZ00338 165 VTHLMKVSKNSFNPPPKVESSVVRIEPKNPPPDVDFEEWDGLLRICFSRKNKTLSAIFKTKSVLQTLEHNYKSWCTMINK 244 (294)
T ss_pred eEEEEEeCchhCCCCCCcEEEEEEEEECCCCCCcCHHHHHHHHHHHHhhccHHHHHHhCcchhHHHHHhhhhhhhccccc
Confidence 99999999999999999999999999987555567788999999999999999999999888889999999776521000
Q ss_pred cCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCcchhhHHHHHHHHHhCCCCCchhccCCHHHH
Q 018261 265 QNSSLGNTEIGTDTPSLGDSNGDQSMGVDDGSDDEMDVEDDDGDSDVEGEVSEFKDKVLAVLREGQFEEKRASKLTQQEF 344 (359)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~r~~~l~~~~~ 344 (359)
+.+ +.....+++|.++|+++|+++.|||+||++||
T Consensus 245 ~~~---------------------------------------------~~~~~~~~~~~~~l~~~~~~~~R~e~l~~~~f 279 (294)
T PTZ00338 245 KVP---------------------------------------------VSLEPFKEFIAEILEDSGMFEKRSVKLDIDDF 279 (294)
T ss_pred ccc---------------------------------------------chhhhHHHHHHHHHHHcCCcccChhhCCHHHH
Confidence 000 01123589999999999999899999999999
Q ss_pred HHHHHHHhhcCCccC
Q 018261 345 LYLLSLFNKAGIHFS 359 (359)
Q Consensus 345 ~~l~~~~~~~gi~f~ 359 (359)
++|+++++++||||.
T Consensus 280 ~~L~~~~~~~~~~~~ 294 (294)
T PTZ00338 280 LKLLLAFNKKGIHFV 294 (294)
T ss_pred HHHHHHHHHcCcccC
Confidence 999999999999995
No 3
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=4.9e-57 Score=418.74 Aligned_cols=251 Identities=40% Similarity=0.583 Sum_probs=232.6
Q ss_pred cccccCCCcccccCHHHHHHHHHHcCCCCCCEEEEEcCcccHHHHHHHHcCCeEEEEeCCHHHHHHHHHHhhcCCCCCCe
Q 018261 28 ISFHKSKGQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEAGKMVIAVELDSRMVLELQRRFQSTPYSNRL 107 (359)
Q Consensus 28 ~~~~k~~GQ~fl~d~~v~~~iv~~~~~~~~~~VLDIGcGtG~lt~~La~~~~~V~avDid~~~i~~a~~~~~~~~~~~~v 107 (359)
++++|++|||||+|++++++|++.+++.++++|||||||.|++|..|++++.+|+|||+|+++++.+++++.... |+
T Consensus 2 ~k~~K~~GQnFL~d~~v~~kIv~~a~~~~~d~VlEIGpG~GaLT~~Ll~~~~~v~aiEiD~~l~~~L~~~~~~~~---n~ 78 (259)
T COG0030 2 FRPNKRLGQNFLIDKNVIDKIVEAANISPGDNVLEIGPGLGALTEPLLERAARVTAIEIDRRLAEVLKERFAPYD---NL 78 (259)
T ss_pred CCCCCCcccccccCHHHHHHHHHhcCCCCCCeEEEECCCCCHHHHHHHhhcCeEEEEEeCHHHHHHHHHhccccc---ce
Confidence 456799999999999999999999999999999999999999999999999999999999999999999987443 99
Q ss_pred EEEEccccCCCCC---CCcccccccccccchHHHHHHHhcCchhhHHHHHHHHHHHHHHhccCCCeeEEeecchhhhHHh
Q 018261 108 KVIQGDVLKTDLP---YFDICVANIPYQISSPLTFKLLFHQPAFRCAIIMFQKEFAMRLVAQPGDKLYCRLSVNTQLHAR 184 (359)
Q Consensus 108 ~~i~~D~~~~~l~---~fD~VvsNlPy~i~s~ii~~ll~~~~~~~~~~~~~qkE~a~Rlv~kpGg~~y~~lsv~~q~~~~ 184 (359)
+++++|+++++++ .++.||+|+||+|+||++++++++...++.+++|+|+|+|+|++++||++.|++||+..|+|++
T Consensus 79 ~vi~~DaLk~d~~~l~~~~~vVaNlPY~Isspii~kll~~~~~~~~~v~M~QkEva~Rl~A~pgsk~Yg~LsV~~q~~~~ 158 (259)
T COG0030 79 TVINGDALKFDFPSLAQPYKVVANLPYNISSPILFKLLEEKFIIQDMVLMVQKEVAERLVAKPGSKDYGRLSVLVQYYAD 158 (259)
T ss_pred EEEeCchhcCcchhhcCCCEEEEcCCCcccHHHHHHHHhccCccceEEEEeHHHHHHHHhCCCCCcccchhhhhhhheEE
Confidence 9999999999988 5899999999999999999999998888899999999999999999999999999999999999
Q ss_pred hhhhhccCCCCccCCCCcceeEEEEeeCCCCC--CCChHHHHHHHHHHhcCcchHHHhhhchhhHHHHHHHHHHHHHHhh
Q 018261 185 VSHLLKVGKNNFRPPPKVDSSVVRIEPRKPRP--QVNPVEWDGFLRICFIRKNKTLSSIFRLKNVLSMLEKNYRTLQALQ 262 (359)
Q Consensus 185 v~~l~~v~~~~F~P~P~V~S~vv~l~~~~~~~--~~~~~~~~~lvr~~F~~rrKtl~~~l~~~~~~~~l~~~~~~~~~~~ 262 (359)
++.++.||+++|+|+|+|+|+|+++.|+...+ ..+++.|+.+++++|.+|||||+|+|++.
T Consensus 159 v~~~~~Vpp~~F~P~PkVdSavv~L~~~~~~~~~~~d~~~~~~~~~~~F~~RRKtl~n~l~~~----------------- 221 (259)
T COG0030 159 VEIVFDVPPSAFYPPPKVDSAVVRLVPKKEKPSPVKDEEKFFKFVKAAFSQRRKTLRNNLKNL----------------- 221 (259)
T ss_pred EEEEEEEChhhCCCCCCccEEEEEEEeCCCCCCcccCHHHHHHHHHHHHhhhhHHHHHHHHhh-----------------
Confidence 99999999999999999999999999976333 45788999999999999999999998521
Q ss_pred hccCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCcchhhHHHHHHHHHhCCCCC-chhccCCH
Q 018261 263 SSQNSSLGNTEIGTDTPSLGDSNGDQSMGVDDGSDDEMDVEDDDGDSDVEGEVSEFKDKVLAVLREGQFEE-KRASKLTQ 341 (359)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~-~r~~~l~~ 341 (359)
.. +.++|+.+|+++ .|||+||+
T Consensus 222 -------------------------------------------------------~~--~~~~l~~~~i~~~~R~e~ls~ 244 (259)
T COG0030 222 -------------------------------------------------------FG--LEEVLEAAGIDPNARAENLSP 244 (259)
T ss_pred -------------------------------------------------------hh--HHHHHHhcCCCcccChhhCCH
Confidence 11 679999999997 79999999
Q ss_pred HHHHHHHHHHhhcC
Q 018261 342 QEFLYLLSLFNKAG 355 (359)
Q Consensus 342 ~~~~~l~~~~~~~g 355 (359)
+||++|++.+...+
T Consensus 245 ~~f~~L~~~l~~~~ 258 (259)
T COG0030 245 EDFLKLANALKGFL 258 (259)
T ss_pred HHHHHHHHHHhhhc
Confidence 99999999997654
No 4
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=100.00 E-value=1e-47 Score=363.98 Aligned_cols=257 Identities=39% Similarity=0.564 Sum_probs=231.4
Q ss_pred CCccccccccCCCcccccCHHHHHHHHHHcCCCCCCEEEEEcCcccHHHHHHHHcCCeEEEEeCCHHHHHHHHHHhhcCC
Q 018261 23 LGAGGISFHKSKGQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEAGKMVIAVELDSRMVLELQRRFQSTP 102 (359)
Q Consensus 23 ~~~~~~~~~k~~GQ~fl~d~~v~~~iv~~~~~~~~~~VLDIGcGtG~lt~~La~~~~~V~avDid~~~i~~a~~~~~~~~ 102 (359)
++.++++++|++||||++|+.+++.|++.+.+.++++|||||||+|.+|..|++.+.+|+|+|+|+.|++.+++++..
T Consensus 9 l~~~~~~~~k~~gq~fl~~~~i~~~i~~~l~~~~~~~VLEiG~G~G~lt~~L~~~~~~v~avE~d~~~~~~~~~~~~~-- 86 (272)
T PRK00274 9 LERYGHRAKKSLGQNFLIDENILDKIVDAAGPQPGDNVLEIGPGLGALTEPLLERAAKVTAVEIDRDLAPILAETFAE-- 86 (272)
T ss_pred HHHcCCCCCcccCcCcCCCHHHHHHHHHhcCCCCcCeEEEeCCCccHHHHHHHHhCCcEEEEECCHHHHHHHHHhhcc--
Confidence 346689999999999999999999999999998999999999999999999999988999999999999999987743
Q ss_pred CCCCeEEEEccccCCCCCC--CcccccccccccchHHHHHHHhcCchhhHHHHHHHHHHHHHHhccCCCeeEEeecchhh
Q 018261 103 YSNRLKVIQGDVLKTDLPY--FDICVANIPYQISSPLTFKLLFHQPAFRCAIIMFQKEFAMRLVAQPGDKLYCRLSVNTQ 180 (359)
Q Consensus 103 ~~~~v~~i~~D~~~~~l~~--fD~VvsNlPy~i~s~ii~~ll~~~~~~~~~~~~~qkE~a~Rlv~kpGg~~y~~lsv~~q 180 (359)
.+++++++|+.+++++. ++.||+|+||+++++++.+++.+...+..+++|+|+|+|+|++++||.+.|+.+|+..|
T Consensus 87 --~~v~~i~~D~~~~~~~~~~~~~vv~NlPY~iss~ii~~~l~~~~~~~~~~l~~QkE~A~Rl~a~pg~~~y~~lSv~~~ 164 (272)
T PRK00274 87 --DNLTIIEGDALKVDLSELQPLKVVANLPYNITTPLLFHLLEERDPIRDMVVMVQKEVAERIVAKPGSKAYGRLSVLVQ 164 (272)
T ss_pred --CceEEEEChhhcCCHHHcCcceEEEeCCccchHHHHHHHHhcCCCCCeeEEEeHHHHHHHHcCCCCCccccHHHHHHH
Confidence 38999999999988765 48999999999999999999987666788999999999999999999999999999999
Q ss_pred hHHhhhhhhccCCCCccCCCCcceeEEEEeeCCCC--CCCChHHHHHHHHHHhcCcchHHHhhhchhhHHHHHHHHHHHH
Q 018261 181 LHARVSHLLKVGKNNFRPPPKVDSSVVRIEPRKPR--PQVNPVEWDGFLRICFIRKNKTLSSIFRLKNVLSMLEKNYRTL 258 (359)
Q Consensus 181 ~~~~v~~l~~v~~~~F~P~P~V~S~vv~l~~~~~~--~~~~~~~~~~lvr~~F~~rrKtl~~~l~~~~~~~~l~~~~~~~ 258 (359)
++++++.++.|+++.|+|+|+|+|+++++.|++.. ...+.+.|..+++.+|.+|||+|.++|+. +
T Consensus 165 ~~~~~~~~~~v~~~~F~P~PkV~s~vv~l~~~~~~~~~~~~~~~~~~~~~~~F~~rrk~l~~~l~~-------------~ 231 (272)
T PRK00274 165 YYCDVEKVFDVPPSAFVPPPKVDSAVVRLVPRKEPPVPVKDEELFFRVVKAAFAQRRKTLRNNLKN-------------L 231 (272)
T ss_pred HHcceEEEEEeChhhCCCCCCceEEEEEEEECCCCCCCcccHHHHHHHHHHHHhchHHHHHHHHHh-------------h
Confidence 99999999999999999999999999999997543 34567889999999999999999998741 1
Q ss_pred HHhhhccCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCcchhhHHHHHHHHHhCCCCC-chhc
Q 018261 259 QALQSSQNSSLGNTEIGTDTPSLGDSNGDQSMGVDDGSDDEMDVEDDDGDSDVEGEVSEFKDKVLAVLREGQFEE-KRAS 337 (359)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~-~r~~ 337 (359)
. ..++.+..+|+.+|+++ .||+
T Consensus 232 ~---------------------------------------------------------~~~~~~~~~l~~~~~~~~~r~~ 254 (272)
T PRK00274 232 F---------------------------------------------------------GSKEKLEEALEAAGIDPNRRAE 254 (272)
T ss_pred c---------------------------------------------------------cchHHHHHHHHHCCCCcCCCce
Confidence 1 02456778999999997 7999
Q ss_pred cCCHHHHHHHHHHHhh
Q 018261 338 KLTQQEFLYLLSLFNK 353 (359)
Q Consensus 338 ~l~~~~~~~l~~~~~~ 353 (359)
+|+++||++|++.+.+
T Consensus 255 ~l~~~~~~~L~~~~~~ 270 (272)
T PRK00274 255 TLSVEEFVRLANALAA 270 (272)
T ss_pred eCCHHHHHHHHHHHHh
Confidence 9999999999998764
No 5
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=100.00 E-value=3.4e-46 Score=350.04 Aligned_cols=249 Identities=43% Similarity=0.655 Sum_probs=224.1
Q ss_pred cccccCCCcccccCHHHHHHHHHHcCCCCCCEEEEEcCcccHHHHHHHHcCCeEEEEeCCHHHHHHHHHHhhcCCCCCCe
Q 018261 28 ISFHKSKGQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEAGKMVIAVELDSRMVLELQRRFQSTPYSNRL 107 (359)
Q Consensus 28 ~~~~k~~GQ~fl~d~~v~~~iv~~~~~~~~~~VLDIGcGtG~lt~~La~~~~~V~avDid~~~i~~a~~~~~~~~~~~~v 107 (359)
++++|++|||||+|++++++|++.+++.++++|||||||+|.+|..|++.+.+|+++|+|+.|++.+++++... .++
T Consensus 1 ~~~~k~~gq~fl~d~~i~~~i~~~~~~~~~~~VLEiG~G~G~lt~~L~~~~~~v~~iE~d~~~~~~l~~~~~~~---~~v 77 (253)
T TIGR00755 1 FRPRKSLGQNFLIDESVIQKIVEAANVLEGDVVLEIGPGLGALTEPLLKRAKKVTAIEIDPRLAEILRKLLSLY---ERL 77 (253)
T ss_pred CCCCCCCCCccCCCHHHHHHHHHhcCCCCcCEEEEeCCCCCHHHHHHHHhCCcEEEEECCHHHHHHHHHHhCcC---CcE
Confidence 46899999999999999999999999989999999999999999999999889999999999999999887543 389
Q ss_pred EEEEccccCCCCCCCc---ccccccccccchHHHHHHHhcCchhhHHHHHHHHHHHHHHhccCCCeeEEeecchhhhHHh
Q 018261 108 KVIQGDVLKTDLPYFD---ICVANIPYQISSPLTFKLLFHQPAFRCAIIMFQKEFAMRLVAQPGDKLYCRLSVNTQLHAR 184 (359)
Q Consensus 108 ~~i~~D~~~~~l~~fD---~VvsNlPy~i~s~ii~~ll~~~~~~~~~~~~~qkE~a~Rlv~kpGg~~y~~lsv~~q~~~~ 184 (359)
+++++|+++++++.+| +|++|+||+++++++.+++. ...+..+++|+|+|+|+|++++||.+.|+.+++..+++++
T Consensus 78 ~v~~~D~~~~~~~~~d~~~~vvsNlPy~i~~~il~~ll~-~~~~~~~~~~~q~e~a~Rl~a~pg~~~y~~lsv~~~~~~~ 156 (253)
T TIGR00755 78 EVIEGDALKVDLPDFPKQLKVVSNLPYNISSPLIFKLLE-KPKFRLAVLMVQKEVAERLTAKPGSKDYGRLSVLVQYFAN 156 (253)
T ss_pred EEEECchhcCChhHcCCcceEEEcCChhhHHHHHHHHhc-cCCCceEEEEehHHHHHHHccCCCCCcccHHHHHHHHHcc
Confidence 9999999998877777 99999999999999999996 4567789999999999999999999999999999999999
Q ss_pred hhhhhccCCCCccCCCCcceeEEEEeeCCCCCCCChHHHHHHHHHHhcCcchHHHhhhchhhHHHHHHHHHHHHHHhhhc
Q 018261 185 VSHLLKVGKNNFRPPPKVDSSVVRIEPRKPRPQVNPVEWDGFLRICFIRKNKTLSSIFRLKNVLSMLEKNYRTLQALQSS 264 (359)
Q Consensus 185 v~~l~~v~~~~F~P~P~V~S~vv~l~~~~~~~~~~~~~~~~lvr~~F~~rrKtl~~~l~~~~~~~~l~~~~~~~~~~~~~ 264 (359)
++.++.+++++|+|+|+|+|+++++.|++.....+.+.|..+++.+|.+|||+|.++|+. +.
T Consensus 157 ~~~~~~v~~~~F~P~PkVds~vv~l~~~~~~~~~~~~~~~~~~~~~F~~rrk~l~~~l~~-------------~~----- 218 (253)
T TIGR00755 157 VEIVFKVPPSAFYPPPKVDSAVVRLIPREQFPVKDIALFEKLLKAAFSQRRKTLRNNLKQ-------------LL----- 218 (253)
T ss_pred eEEEEEEchhhCcCCCCeeEEEEEEEECCCCCcccHHHHHHHHHHHHccchHHHHHHHhh-------------hc-----
Confidence 999999999999999999999999999865445567889999999999999999998842 11
Q ss_pred cCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCcchhhHHHHHHHHHhCCCCC-chhccCCHHH
Q 018261 265 QNSSLGNTEIGTDTPSLGDSNGDQSMGVDDGSDDEMDVEDDDGDSDVEGEVSEFKDKVLAVLREGQFEE-KRASKLTQQE 343 (359)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~-~r~~~l~~~~ 343 (359)
.++.+..+|+.+|++. +|+++||++|
T Consensus 219 -----------------------------------------------------~~~~~~~~l~~~~i~~~~r~~~l~~~~ 245 (253)
T TIGR00755 219 -----------------------------------------------------KASKLEEVLEQLGLDPTARAEQLSPED 245 (253)
T ss_pred -----------------------------------------------------chhHHHHHHHHCCcCCCCCcccCCHHH
Confidence 1234567899999986 7999999999
Q ss_pred HHHHHHHH
Q 018261 344 FLYLLSLF 351 (359)
Q Consensus 344 ~~~l~~~~ 351 (359)
|++|++.+
T Consensus 246 ~~~l~~~~ 253 (253)
T TIGR00755 246 FLRLANLL 253 (253)
T ss_pred HHHHHHhC
Confidence 99998753
No 6
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=100.00 E-value=1.3e-45 Score=347.10 Aligned_cols=211 Identities=45% Similarity=0.695 Sum_probs=193.6
Q ss_pred cccccCCCcccccCHHHHHHHHHHcCCCCCCEEEEEcCcccHHHHHHHHcCCeEEEEeCCHHHHHHHHHHhhcCCCCCCe
Q 018261 28 ISFHKSKGQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEAGKMVIAVELDSRMVLELQRRFQSTPYSNRL 107 (359)
Q Consensus 28 ~~~~k~~GQ~fl~d~~v~~~iv~~~~~~~~~~VLDIGcGtG~lt~~La~~~~~V~avDid~~~i~~a~~~~~~~~~~~~v 107 (359)
++++|++|||||+|++++++|++.+++.++++|||||||+|.+|..|++.+.+|+++|+|+.|++.+++++... .++
T Consensus 1 ~~~~k~~GQnfl~d~~~~~~iv~~~~~~~~~~VLEIG~G~G~lt~~L~~~~~~v~~vEid~~~~~~l~~~~~~~---~~v 77 (258)
T PRK14896 1 IRMNKKLGQHFLIDDRVVDRIVEYAEDTDGDPVLEIGPGKGALTDELAKRAKKVYAIELDPRLAEFLRDDEIAA---GNV 77 (258)
T ss_pred CCCCCcCCccccCCHHHHHHHHHhcCCCCcCeEEEEeCccCHHHHHHHHhCCEEEEEECCHHHHHHHHHHhccC---CCE
Confidence 36899999999999999999999999989999999999999999999999889999999999999999987653 389
Q ss_pred EEEEccccCCCCCCCcccccccccccchHHHHHHHhcCchhhHHHHHHHHHHHHHHhccCCCeeEEeecchhhhHHhhhh
Q 018261 108 KVIQGDVLKTDLPYFDICVANIPYQISSPLTFKLLFHQPAFRCAIIMFQKEFAMRLVAQPGDKLYCRLSVNTQLHARVSH 187 (359)
Q Consensus 108 ~~i~~D~~~~~l~~fD~VvsNlPy~i~s~ii~~ll~~~~~~~~~~~~~qkE~a~Rlv~kpGg~~y~~lsv~~q~~~~v~~ 187 (359)
+++++|+++++++.||.|++|+||+++++++.+++.+ .+..+++|+|+|+|.|++++||++.|+.+++..++++.++.
T Consensus 78 ~ii~~D~~~~~~~~~d~Vv~NlPy~i~s~~~~~l~~~--~~~~~~l~~q~e~A~rl~a~~g~~~yg~lsv~~~~~~~~~~ 155 (258)
T PRK14896 78 EIIEGDALKVDLPEFNKVVSNLPYQISSPITFKLLKH--GFEPAVLMYQKEFAERMVAKPGTKEYGRLSVMVQYYADVEI 155 (258)
T ss_pred EEEEeccccCCchhceEEEEcCCcccCcHHHHHHHhh--ccceeEEEeeHHHHHHhcCCCCCccccHHHHHHHHHeeeEE
Confidence 9999999998888899999999999999999998873 34568899999999999999999999999999999999999
Q ss_pred hhccCCCCccCCCCcceeEEEEeeCCCCC-CCChHHHHHHHHHHhcCcchHHHhhhc
Q 018261 188 LLKVGKNNFRPPPKVDSSVVRIEPRKPRP-QVNPVEWDGFLRICFIRKNKTLSSIFR 243 (359)
Q Consensus 188 l~~v~~~~F~P~P~V~S~vv~l~~~~~~~-~~~~~~~~~lvr~~F~~rrKtl~~~l~ 243 (359)
++.++++.|.|+|+|+|+|+++.|+++.. ..+.+.|+.+++.+|.+|||+|.|+|+
T Consensus 156 ~~~v~~~~F~P~PkV~s~vi~l~~~~~~~~~~~~~~~~~~~~~~F~~rrk~l~~~l~ 212 (258)
T PRK14896 156 VEKVPPGAFSPKPKVDSAVVRLTPREPKYEVYDEDFFDDFVKALFQHRRKTLRNALK 212 (258)
T ss_pred EEEeChHhCCCCCCceEEEEEEEECCCCCCCchHHHHHHHHHHHHccccHHHHHHHh
Confidence 99999999999999999999999987432 345577999999999999999999984
No 7
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=100.00 E-value=2e-44 Score=339.78 Aligned_cols=252 Identities=40% Similarity=0.602 Sum_probs=221.5
Q ss_pred cccccCCCcccccCHHHHHHHHHHcCCCCCCEEEEEcCcccHHHHHHHHcCCeEEEEeCCHHHHHHHHHHhhcCCCCCCe
Q 018261 28 ISFHKSKGQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEAGKMVIAVELDSRMVLELQRRFQSTPYSNRL 107 (359)
Q Consensus 28 ~~~~k~~GQ~fl~d~~v~~~iv~~~~~~~~~~VLDIGcGtG~lt~~La~~~~~V~avDid~~~i~~a~~~~~~~~~~~~v 107 (359)
.+++|++|||||+|++++++|++.+++.+++.|||||||+|.+|..|++.+.+|++||+|+.+++.+++++...+ ++
T Consensus 2 ~k~kk~~gQnFL~~~~~~~~Iv~~~~~~~~~~VlEiGpG~G~lT~~L~~~~~~v~~vE~d~~~~~~L~~~~~~~~---~~ 78 (262)
T PF00398_consen 2 HKPKKSLGQNFLVDPNIADKIVDALDLSEGDTVLEIGPGPGALTRELLKRGKRVIAVEIDPDLAKHLKERFASNP---NV 78 (262)
T ss_dssp -SC-CGCTSSEEEHHHHHHHHHHHHTCGTTSEEEEESSTTSCCHHHHHHHSSEEEEEESSHHHHHHHHHHCTTCS---SE
T ss_pred CCCCCCCCcCeeCCHHHHHHHHHhcCCCCCCEEEEeCCCCccchhhHhcccCcceeecCcHhHHHHHHHHhhhcc---cc
Confidence 468899999999999999999999999999999999999999999999999999999999999999999887444 99
Q ss_pred EEEEccccCCCCCC-----CcccccccccccchHHHHHHHhc-CchhhHHHHHHHHHHHHHHhccCCCeeEEeecchhhh
Q 018261 108 KVIQGDVLKTDLPY-----FDICVANIPYQISSPLTFKLLFH-QPAFRCAIIMFQKEFAMRLVAQPGDKLYCRLSVNTQL 181 (359)
Q Consensus 108 ~~i~~D~~~~~l~~-----fD~VvsNlPy~i~s~ii~~ll~~-~~~~~~~~~~~qkE~a~Rlv~kpGg~~y~~lsv~~q~ 181 (359)
+++++|+++++... ...||+|+||+++++++.+++.. ......+++|+|+|+|+|++++||.+.|+.+++..++
T Consensus 79 ~vi~~D~l~~~~~~~~~~~~~~vv~NlPy~is~~il~~ll~~~~~g~~~~~l~vq~e~a~rl~a~pg~~~~~~lsv~~q~ 158 (262)
T PF00398_consen 79 EVINGDFLKWDLYDLLKNQPLLVVGNLPYNISSPILRKLLELYRFGRVRMVLMVQKEVAERLLAKPGSKRYSRLSVLAQA 158 (262)
T ss_dssp EEEES-TTTSCGGGHCSSSEEEEEEEETGTGHHHHHHHHHHHGGGCEEEEEEEEEHHHHHHHHTSTTSTTCSHHHHHHHH
T ss_pred eeeecchhccccHHhhcCCceEEEEEecccchHHHHHHHhhcccccccceEEEEehhhhhhccCCCCCCccchhhhhhhh
Confidence 99999999987653 34899999999999999999983 3335778899999999999999999999999999999
Q ss_pred HHhhhhhhccCCCCccCCCCcceeEEEEeeCCCC--CCCChHHHHHHHHHHhcCcchHHHhhhchhhHHHHHHHHHHHHH
Q 018261 182 HARVSHLLKVGKNNFRPPPKVDSSVVRIEPRKPR--PQVNPVEWDGFLRICFIRKNKTLSSIFRLKNVLSMLEKNYRTLQ 259 (359)
Q Consensus 182 ~~~v~~l~~v~~~~F~P~P~V~S~vv~l~~~~~~--~~~~~~~~~~lvr~~F~~rrKtl~~~l~~~~~~~~l~~~~~~~~ 259 (359)
+++++.+..++++.|+|+|+|+|+++++.|+... ...+.+.|..+++.+|.+|||+|.++|+.- +
T Consensus 159 ~~~i~~l~~v~~~~F~P~PkVds~vv~l~p~~~~~~~~~~~~~~~~~~~~~F~~rrk~l~~~L~~~---------~---- 225 (262)
T PF00398_consen 159 FFDIKLLFKVPPSCFYPPPKVDSAVVRLTPKENPLIPPEDMDAFEYFVRQLFSQRRKTLRNSLKSL---------F---- 225 (262)
T ss_dssp HEEEEEEEEE-GGGEESSSSS-EEEEEEEE-SSCSS-CSHHHHHHHHHHHHHTTTTSBHHHHTTCT---------H----
T ss_pred hhceeEecccCCccccCCCCCceEEEEEEECCCCCCcccCHHHHHHHHHHHHhCcchHHHHHHhhh---------c----
Confidence 9999999999999999999999999999999764 355678999999999999999999998521 1
Q ss_pred HhhhccCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCcchhhHHHHHHHHHhCCCCC-chhcc
Q 018261 260 ALQSSQNSSLGNTEIGTDTPSLGDSNGDQSMGVDDGSDDEMDVEDDDGDSDVEGEVSEFKDKVLAVLREGQFEE-KRASK 338 (359)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~-~r~~~ 338 (359)
..+.+..+++++||++ .|+++
T Consensus 226 ----------------------------------------------------------~~~~~~~~~~~~~i~~~~r~~~ 247 (262)
T PF00398_consen 226 ----------------------------------------------------------PGEQLEELLEKAGIDPNARAEE 247 (262)
T ss_dssp ----------------------------------------------------------HHHHHHHHHHHCTHTTTTCGGC
T ss_pred ----------------------------------------------------------CHHHHHHhhhhcCCCCCCCccc
Confidence 3456778888899997 69999
Q ss_pred CCHHHHHHHHHHHhh
Q 018261 339 LTQQEFLYLLSLFNK 353 (359)
Q Consensus 339 l~~~~~~~l~~~~~~ 353 (359)
||+++|++|++.+++
T Consensus 248 ls~~~~~~l~~~l~k 262 (262)
T PF00398_consen 248 LSPEQFLKLFKYLNK 262 (262)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhhC
Confidence 999999999999874
No 8
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=99.97 E-value=2.1e-32 Score=241.44 Aligned_cols=165 Identities=51% Similarity=0.777 Sum_probs=153.1
Q ss_pred HHHHHHHcCCCCCCEEEEEcCcccHHHHHHHHcCCeEEEEeCCHHHHHHHHHHhhcCCCCCCeEEEEccccCCCCC--CC
Q 018261 45 VESIVQKAGIKSTDVILEIGPGTGNLTKKLLEAGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTDLP--YF 122 (359)
Q Consensus 45 ~~~iv~~~~~~~~~~VLDIGcGtG~lt~~La~~~~~V~avDid~~~i~~a~~~~~~~~~~~~v~~i~~D~~~~~l~--~f 122 (359)
+++|++.+++.++++|||||||+|.+|..+++++.+|+++|+|+.+++.+++++.... +++++++|+++++++ .|
T Consensus 2 ~~~i~~~~~~~~~~~vLEiG~G~G~lt~~l~~~~~~v~~vE~~~~~~~~~~~~~~~~~---~v~ii~~D~~~~~~~~~~~ 78 (169)
T smart00650 2 IDKIVRAANLRPGDTVLEIGPGKGALTEELLERAARVTAIEIDPRLAPRLREKFAAAD---NLTVIHGDALKFDLPKLQP 78 (169)
T ss_pred HHHHHHhcCCCCcCEEEEECCCccHHHHHHHhcCCeEEEEECCHHHHHHHHHHhccCC---CEEEEECchhcCCccccCC
Confidence 5788899998889999999999999999999988899999999999999999986533 899999999998765 48
Q ss_pred cccccccccccchHHHHHHHhcCchhhHHHHHHHHHHHHHHhccCCCeeEEeecchhhhHHhhhhhhccCCCCccCCCCc
Q 018261 123 DICVANIPYQISSPLTFKLLFHQPAFRCAIIMFQKEFAMRLVAQPGDKLYCRLSVNTQLHARVSHLLKVGKNNFRPPPKV 202 (359)
Q Consensus 123 D~VvsNlPy~i~s~ii~~ll~~~~~~~~~~~~~qkE~a~Rlv~kpGg~~y~~lsv~~q~~~~v~~l~~v~~~~F~P~P~V 202 (359)
|.|++|+||+++++++.++++.......+++|+|+|+++|++++||.+.|+.+++..|++++++.+++|++++|+|+|+|
T Consensus 79 d~vi~n~Py~~~~~~i~~~l~~~~~~~~~~l~~q~e~a~rl~~~~~~~~y~~lsv~~~~~~~~~~~~~v~~~~F~P~PkV 158 (169)
T smart00650 79 YKVVGNLPYNISTPILFKLLEEPPAFRDAVLMVQKEVARRLAAKPGSKDYGRLSVLLQPYFDVKILFKVPPEAFRPPPKV 158 (169)
T ss_pred CEEEECCCcccHHHHHHHHHhcCCCcceEEEEEEHHHhHHhcCCCCCCcccHHHHHHHHHeeEEEEEEEChhhCCCCCCc
Confidence 99999999999999999999876656788899999999999999999999999999999999999999999999999999
Q ss_pred ceeEEEEeeC
Q 018261 203 DSSVVRIEPR 212 (359)
Q Consensus 203 ~S~vv~l~~~ 212 (359)
+|++++++|+
T Consensus 159 ~s~~~~~~~~ 168 (169)
T smart00650 159 DSAVVRLERR 168 (169)
T ss_pred eEEEEEEEEC
Confidence 9999999875
No 9
>KOG0821 consensus Predicted ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=99.96 E-value=8.6e-30 Score=227.24 Aligned_cols=262 Identities=27% Similarity=0.396 Sum_probs=220.0
Q ss_pred cccccccCCCcccccCHHHHHHHHHHcCCCCCCEEEEEcCcccHHHHHHHHcC-CeEEEEeCCHHHHHHHHHHhhcCCCC
Q 018261 26 GGISFHKSKGQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEAG-KMVIAVELDSRMVLELQRRFQSTPYS 104 (359)
Q Consensus 26 ~~~~~~k~~GQ~fl~d~~v~~~iv~~~~~~~~~~VLDIGcGtG~lt~~La~~~-~~V~avDid~~~i~~a~~~~~~~~~~ 104 (359)
|.++++|.++||||.|.++.++|+..++.-..+-|+|||+|.|.+|+.+++.+ .++..||+|+++++-++......+
T Consensus 20 YRLqA~K~LSQNfLMD~~lT~KIvK~A~~~~~~~v~eIgPgpggitR~il~a~~~RL~vVE~D~RFip~LQ~L~EAa~-- 97 (326)
T KOG0821|consen 20 YRLQAAKQLSQNFLMDLRLTDKIVKKAGNLTNAYVYEIGPGPGGITRSILNADVARLLVVEKDTRFIPGLQMLSEAAP-- 97 (326)
T ss_pred HHHHHHHHHhHhHHhhhHHHHHHHHhccccccceeEEecCCCCchhHHHHhcchhheeeeeeccccChHHHHHhhcCC--
Confidence 57889999999999999999999999988888999999999999999999885 689999999999988877665444
Q ss_pred CCeEEEEccccCCCCC----------CC-----cccccccccccchHHHHHHHhcCc----h----hhHHHHHHHHHHHH
Q 018261 105 NRLKVIQGDVLKTDLP----------YF-----DICVANIPYQISSPLTFKLLFHQP----A----FRCAIIMFQKEFAM 161 (359)
Q Consensus 105 ~~v~~i~~D~~~~~l~----------~f-----D~VvsNlPy~i~s~ii~~ll~~~~----~----~~~~~~~~qkE~a~ 161 (359)
.+..+.++|++.+..+ .- -.|++|+||++++|++.++|+... . ..++.+.+|+|+|+
T Consensus 98 ~~~~IHh~D~LR~~I~~~~~~~~~Rpw~d~~p~~H~IGNLPf~i~~pliik~l~~~s~r~G~~~ygrt~mTLTFQ~EVAe 177 (326)
T KOG0821|consen 98 GKLRIHHGDVLRFKIEKAFSESLKRPWEDDPPNVHIIGNLPFSVSTPLIIKWLENISCRDGPFVYGRTQMTLTFQKEVAE 177 (326)
T ss_pred cceEEeccccceehHHhhcchhhcCCcccCCCceEEeccCCccccchHHHHHHhhcccccCCeeecceeeEEehHHHHHH
Confidence 4788999999876532 01 269999999999999999998532 1 23566889999999
Q ss_pred HHhccCCCeeEEeecchhhhHHhhhhhhccCCCCccCCCCcceeEEEEeeCC-CCCCCChHHHHHHHHHHhcCcchHHHh
Q 018261 162 RLVAQPGDKLYCRLSVNTQLHARVSHLLKVGKNNFRPPPKVDSSVVRIEPRK-PRPQVNPVEWDGFLRICFIRKNKTLSS 240 (359)
Q Consensus 162 Rlv~kpGg~~y~~lsv~~q~~~~v~~l~~v~~~~F~P~P~V~S~vv~l~~~~-~~~~~~~~~~~~lvr~~F~~rrKtl~~ 240 (359)
|+++.-|+.--+++|+..|+|++....+.+|..+|.|.|.||..|+++.|.+ +.....++.+++++|..|..|.|-...
T Consensus 178 RlCaP~~~~qRsRlSvMSQy~~EP~M~FtI~G~~FVPkPQVDVGVV~f~P~K~P~~~~~F~lvEkV~R~vF~~RQKY~~r 257 (326)
T KOG0821|consen 178 RLCAPTGSKQRSRLSVMSQYLCEPRMIFTIPGQAFVPKPQVDVGVVHFTPLKQPKIEQPFKLVEKVVRNVFQFRQKYCHR 257 (326)
T ss_pred HhcccccccchhhHHHHHHHhcCceEEEEecCccccCCCcceeeeEEeeecCCccccCCHHHHHHHHHHHHHHHHHHHHc
Confidence 9999999999999999999999999999999999999999999999999986 445778899999999999988887776
Q ss_pred hhchhhHHHHHHHHHHHHHHhhhccCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCcchhhHH
Q 018261 241 IFRLKNVLSMLEKNYRTLQALQSSQNSSLGNTEIGTDTPSLGDSNGDQSMGVDDGSDDEMDVEDDDGDSDVEGEVSEFKD 320 (359)
Q Consensus 241 ~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (359)
.+++- | . + ..-.|
T Consensus 258 Gl~TL---------~---P-------e------------------------------------------------E~r~E 270 (326)
T KOG0821|consen 258 GLRTL---------F---P-------E------------------------------------------------EQRLE 270 (326)
T ss_pred ccccc---------C---C-------H------------------------------------------------HHHHH
Confidence 55321 1 0 0 00123
Q ss_pred HHHHHHHhCCCCC-chhccCCHHHHHHHHHHHhhcCC
Q 018261 321 KVLAVLREGQFEE-KRASKLTQQEFLYLLSLFNKAGI 356 (359)
Q Consensus 321 ~i~~~l~~~~~~~-~r~~~l~~~~~~~l~~~~~~~gi 356 (359)
--...|+.+.|++ -|+-.|++|+|++|++-.+++=|
T Consensus 271 ~~~~Ll~~~~idpT~r~~~L~iEQf~~LAE~Y~E~c~ 307 (326)
T KOG0821|consen 271 STGRLLELADIDPTLRPRQLSIEQFKSLAEVYREMCD 307 (326)
T ss_pred HHHHHHHHhcCCCccCceeeeHHHHHHHHHHHHHHhc
Confidence 3457889999998 59999999999999998877644
No 10
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.66 E-value=2.9e-15 Score=138.54 Aligned_cols=118 Identities=24% Similarity=0.387 Sum_probs=97.4
Q ss_pred CCCcccccCHHHHHHHHHHcCCCCCCEEEEEcCcccHHHHHHHHcC--CeEEEEeCCHHHHHHHHHHhhcCCCCCCeEEE
Q 018261 33 SKGQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEAG--KMVIAVELDSRMVLELQRRFQSTPYSNRLKVI 110 (359)
Q Consensus 33 ~~GQ~fl~d~~v~~~iv~~~~~~~~~~VLDIGcGtG~lt~~La~~~--~~V~avDid~~~i~~a~~~~~~~~~~~~v~~i 110 (359)
++|+|. .|.+.++..+.+.++.+|||+|||||.++..+++.. .+|+++|+|+.|+..++++....+.. +++++
T Consensus 32 S~g~~~----~Wr~~~i~~~~~~~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~~-~i~fv 106 (238)
T COG2226 32 SFGLHR----LWRRALISLLGIKPGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGVQ-NVEFV 106 (238)
T ss_pred cCcchH----HHHHHHHHhhCCCCCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccCcc-ceEEE
Confidence 566654 556777777777789999999999999999999985 89999999999999999999876554 49999
Q ss_pred EccccCCCCC--CCcccccccccccchHHHHHHHhcCchhhHHHHHHHHHHHHHHhccCCCeeE
Q 018261 111 QGDVLKTDLP--YFDICVANIPYQISSPLTFKLLFHQPAFRCAIIMFQKEFAMRLVAQPGDKLY 172 (359)
Q Consensus 111 ~~D~~~~~l~--~fD~VvsNlPy~i~s~ii~~ll~~~~~~~~~~~~~qkE~a~Rlv~kpGg~~y 172 (359)
++|+++++++ +||+|.+.. .|++.+++..++ +|+.+ |++|||.+.
T Consensus 107 ~~dAe~LPf~D~sFD~vt~~f-----------glrnv~d~~~aL----~E~~R--VlKpgG~~~ 153 (238)
T COG2226 107 VGDAENLPFPDNSFDAVTISF-----------GLRNVTDIDKAL----KEMYR--VLKPGGRLL 153 (238)
T ss_pred EechhhCCCCCCccCEEEeee-----------hhhcCCCHHHHH----HHHHH--hhcCCeEEE
Confidence 9999999988 799998865 445555666666 78864 999999654
No 11
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.64 E-value=1.6e-15 Score=140.70 Aligned_cols=136 Identities=21% Similarity=0.371 Sum_probs=76.5
Q ss_pred cccccCCCCCCCCCCCCccccccccCCCcccccCHHHHHHHHHHcCCCCCCEEEEEcCcccHHHHHHHHc---CCeEEEE
Q 018261 8 KEKGKQKSGPYQGQGLGAGGISFHKSKGQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEA---GKMVIAV 84 (359)
Q Consensus 8 ~~~~~~~~~~y~~~~~~~~~~~~~k~~GQ~fl~d~~v~~~iv~~~~~~~~~~VLDIGcGtG~lt~~La~~---~~~V~av 84 (359)
++-|.+-+..| +..... -++|++ ..|.+.+++.+...++.+|||+|||||.++..+++. ..+|+++
T Consensus 10 ~~~Fd~ia~~Y------D~~n~~-ls~g~~----~~wr~~~~~~~~~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~v 78 (233)
T PF01209_consen 10 RKMFDRIAPRY------DRMNDL-LSFGQD----RRWRRKLIKLLGLRPGDRVLDVACGTGDVTRELARRVGPNGKVVGV 78 (233)
T ss_dssp --------------------------------------SHHHHHHT--S--EEEEET-TTSHHHHHHGGGSS---EEEEE
T ss_pred HHHHHHHHHHh------CCCccc-cCCcHH----HHHHHHHHhccCCCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEe
Confidence 34456666777 222111 256655 445556777778888999999999999999999986 2689999
Q ss_pred eCCHHHHHHHHHHhhcCCCCCCeEEEEccccCCCCC--CCcccccccccccchHHHHHHHhcCchhhHHHHHHHHHHHHH
Q 018261 85 ELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTDLP--YFDICVANIPYQISSPLTFKLLFHQPAFRCAIIMFQKEFAMR 162 (359)
Q Consensus 85 Did~~~i~~a~~~~~~~~~~~~v~~i~~D~~~~~l~--~fD~VvsNlPy~i~s~ii~~ll~~~~~~~~~~~~~qkE~a~R 162 (359)
|+|+.|++.|+++....+.. +++++++|+++++++ +||+|++..- +++.++...++ +|+.+
T Consensus 79 D~s~~ML~~a~~k~~~~~~~-~i~~v~~da~~lp~~d~sfD~v~~~fg-----------lrn~~d~~~~l----~E~~R- 141 (233)
T PF01209_consen 79 DISPGMLEVARKKLKREGLQ-NIEFVQGDAEDLPFPDNSFDAVTCSFG-----------LRNFPDRERAL----REMYR- 141 (233)
T ss_dssp ES-HHHHHHHHHHHHHTT---SEEEEE-BTTB--S-TT-EEEEEEES------------GGG-SSHHHHH----HHHHH-
T ss_pred cCCHHHHHHHHHHHHhhCCC-CeeEEEcCHHHhcCCCCceeEEEHHhh-----------HHhhCCHHHHH----HHHHH-
Confidence 99999999999998876544 899999999998876 6999987652 33334444444 67753
Q ss_pred HhccCCCeeE
Q 018261 163 LVAQPGDKLY 172 (359)
Q Consensus 163 lv~kpGg~~y 172 (359)
+++|||.+.
T Consensus 142 -VLkPGG~l~ 150 (233)
T PF01209_consen 142 -VLKPGGRLV 150 (233)
T ss_dssp -HEEEEEEEE
T ss_pred -HcCCCeEEE
Confidence 999999864
No 12
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=99.54 E-value=5.4e-14 Score=124.23 Aligned_cols=127 Identities=22% Similarity=0.357 Sum_probs=87.7
Q ss_pred HHHcCCCCCCEEEEEcCcccHHHHHHHHcCC--eEEEEeCCHHHHHHHHHHhhcCCCCCCeEEEEccccCCCC-CCCccc
Q 018261 49 VQKAGIKSTDVILEIGPGTGNLTKKLLEAGK--MVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTDL-PYFDIC 125 (359)
Q Consensus 49 v~~~~~~~~~~VLDIGcGtG~lt~~La~~~~--~V~avDid~~~i~~a~~~~~~~~~~~~v~~i~~D~~~~~l-~~fD~V 125 (359)
++.+...+..+|||+|||+|.++..+++... +|+++|+++.+++.+++++..+++.. ++++++|..+... ..||+|
T Consensus 24 ~~~l~~~~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~~~-v~~~~~d~~~~~~~~~fD~I 102 (170)
T PF05175_consen 24 LDNLPKHKGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNGLEN-VEVVQSDLFEALPDGKFDLI 102 (170)
T ss_dssp HHHHHHHTTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTTCTT-EEEEESSTTTTCCTTCEEEE
T ss_pred HHHHhhccCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCccc-cccccccccccccccceeEE
Confidence 3333333678999999999999999998853 59999999999999999999988754 9999999987443 489999
Q ss_pred ccccccccchHHHHHHHhcCchhhHHHHHHHHHHHHHHhccCCCeeEEeecchhhhHHhhhhh
Q 018261 126 VANIPYQISSPLTFKLLFHQPAFRCAIIMFQKEFAMRLVAQPGDKLYCRLSVNTQLHARVSHL 188 (359)
Q Consensus 126 vsNlPy~i~s~ii~~ll~~~~~~~~~~~~~qkE~a~Rlv~kpGg~~y~~lsv~~q~~~~v~~l 188 (359)
++|+|++.....-..+++ ..+ ++ +.+ .++|||.+|...+-...+...+..+
T Consensus 103 v~NPP~~~~~~~~~~~~~------~~i----~~-a~~-~Lk~~G~l~lv~~~~~~~~~~l~~~ 153 (170)
T PF05175_consen 103 VSNPPFHAGGDDGLDLLR------DFI----EQ-ARR-YLKPGGRLFLVINSHLGYERLLKEL 153 (170)
T ss_dssp EE---SBTTSHCHHHHHH------HHH----HH-HHH-HEEEEEEEEEEEETTSCHHHHHHHH
T ss_pred EEccchhcccccchhhHH------HHH----HH-HHH-hccCCCEEEEEeecCCChHHHHHHh
Confidence 999998766542211211 001 22 323 7899999986655433333333333
No 13
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=99.53 E-value=1.6e-14 Score=135.10 Aligned_cols=111 Identities=22% Similarity=0.351 Sum_probs=87.1
Q ss_pred CHHHHHHHHHHcCCCCCCEEEEEcCcccHHHHHHHHcCCeEEEEeCCHHHHHHHHHHhhcCCCCCCeEEEEccccCCCCC
Q 018261 41 NPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEAGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTDLP 120 (359)
Q Consensus 41 d~~v~~~iv~~~~~~~~~~VLDIGcGtG~lt~~La~~~~~V~avDid~~~i~~a~~~~~~~~~~~~v~~i~~D~~~~~l~ 120 (359)
...+.+.+++.+...+..+|||||||+|.++..|++.+.+|+++|+|+.|++.++++.. ...++++|+..++++
T Consensus 27 q~~~a~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~~~D~s~~~l~~a~~~~~------~~~~~~~d~~~~~~~ 100 (251)
T PRK10258 27 QRQSADALLAMLPQRKFTHVLDAGCGPGWMSRYWRERGSQVTALDLSPPMLAQARQKDA------ADHYLAGDIESLPLA 100 (251)
T ss_pred HHHHHHHHHHhcCccCCCeEEEeeCCCCHHHHHHHHcCCeEEEEECCHHHHHHHHhhCC------CCCEEEcCcccCcCC
Confidence 45667777787776667899999999999999999888999999999999999988753 346789999887654
Q ss_pred --CCcccccccccccchHHHHHHHhcCchhhHHHHHHHHHHHHHHhccCCCeeEEe
Q 018261 121 --YFDICVANIPYQISSPLTFKLLFHQPAFRCAIIMFQKEFAMRLVAQPGDKLYCR 174 (359)
Q Consensus 121 --~fD~VvsNlPy~i~s~ii~~ll~~~~~~~~~~~~~qkE~a~Rlv~kpGg~~y~~ 174 (359)
.||+|++|.+++|..+.. ..+ +++. | +++|||.++.+
T Consensus 101 ~~~fD~V~s~~~l~~~~d~~-----------~~l----~~~~-~-~Lk~gG~l~~~ 139 (251)
T PRK10258 101 TATFDLAWSNLAVQWCGNLS-----------TAL----RELY-R-VVRPGGVVAFT 139 (251)
T ss_pred CCcEEEEEECchhhhcCCHH-----------HHH----HHHH-H-HcCCCeEEEEE
Confidence 699999999877654331 111 3443 3 88999998655
No 14
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.51 E-value=1.5e-13 Score=111.88 Aligned_cols=74 Identities=27% Similarity=0.493 Sum_probs=64.2
Q ss_pred CCCEEEEEcCcccHHHHHHHH--cCCeEEEEeCCHHHHHHHHHHhhcCCCCCCeEEEEccc-cCCCC-CCCccccccc
Q 018261 56 STDVILEIGPGTGNLTKKLLE--AGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDV-LKTDL-PYFDICVANI 129 (359)
Q Consensus 56 ~~~~VLDIGcGtG~lt~~La~--~~~~V~avDid~~~i~~a~~~~~~~~~~~~v~~i~~D~-~~~~l-~~fD~VvsNl 129 (359)
|+.+|||||||+|.++..+++ .+.+|+|||+|+.|++.|+++........+++++++|+ ..... +.||+|+++.
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~ 78 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPDFLEPFDLVICSG 78 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTTTSSCEEEEEECS
T ss_pred CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCcccCCCCCEEEECC
Confidence 578999999999999999999 58999999999999999999995555556999999999 44443 3799999877
No 15
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.51 E-value=1.2e-12 Score=123.57 Aligned_cols=115 Identities=22% Similarity=0.293 Sum_probs=85.9
Q ss_pred HHHHHHHHHHcCCCCCCEEEEEcCcccHHHHHHHHc-C--CeEEEEeCCHHHHHHHHHHhhc--CCCCCCeEEEEccccC
Q 018261 42 PLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEA-G--KMVIAVELDSRMVLELQRRFQS--TPYSNRLKVIQGDVLK 116 (359)
Q Consensus 42 ~~v~~~iv~~~~~~~~~~VLDIGcGtG~lt~~La~~-~--~~V~avDid~~~i~~a~~~~~~--~~~~~~v~~i~~D~~~ 116 (359)
..+.+.+++.+.+.++.+|||+|||+|.++..|++. + .+|+|+|+|+.|++.|+++... .....+++++++|+.+
T Consensus 59 ~~~r~~~~~~~~~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~ 138 (261)
T PLN02233 59 RIWKRMAVSWSGAKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATD 138 (261)
T ss_pred HHHHHHHHHHhCCCCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEccccc
Confidence 344555566777888999999999999999999876 3 5899999999999999877531 1112379999999998
Q ss_pred CCCC--CCcccccccccccchHHHHHHHhcCchhhHHHHHHHHHHHHHHhccCCCeeEE
Q 018261 117 TDLP--YFDICVANIPYQISSPLTFKLLFHQPAFRCAIIMFQKEFAMRLVAQPGDKLYC 173 (359)
Q Consensus 117 ~~l~--~fD~VvsNlPy~i~s~ii~~ll~~~~~~~~~~~~~qkE~a~Rlv~kpGg~~y~ 173 (359)
++++ +||+|+++..++. .+++..++ +|+.+ +++|||.+..
T Consensus 139 lp~~~~sfD~V~~~~~l~~-----------~~d~~~~l----~ei~r--vLkpGG~l~i 180 (261)
T PLN02233 139 LPFDDCYFDAITMGYGLRN-----------VVDRLKAM----QEMYR--VLKPGSRVSI 180 (261)
T ss_pred CCCCCCCEeEEEEeccccc-----------CCCHHHHH----HHHHH--HcCcCcEEEE
Confidence 8775 6999998765432 22333333 56653 8899998754
No 16
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=99.50 E-value=1.3e-13 Score=127.88 Aligned_cols=137 Identities=22% Similarity=0.322 Sum_probs=98.0
Q ss_pred ccCCCcccccCHHHHHHHHHHcCCCCCCEEEEEcCcccHHHHHHHHc-C-CeEEEEeCCHHHHHHHHHHhhcCCCCCCeE
Q 018261 31 HKSKGQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEA-G-KMVIAVELDSRMVLELQRRFQSTPYSNRLK 108 (359)
Q Consensus 31 ~k~~GQ~fl~d~~v~~~iv~~~~~~~~~~VLDIGcGtG~lt~~La~~-~-~~V~avDid~~~i~~a~~~~~~~~~~~~v~ 108 (359)
+.+-|-+|=+|.-++.. ...+....+|||||||+|.+++.|+++ . .+|++||++++|++.|+++++.+++..+++
T Consensus 22 q~~~~~~~~~DaiLL~~---~~~~~~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~ 98 (248)
T COG4123 22 QDRCGFRYGTDAILLAA---FAPVPKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQ 98 (248)
T ss_pred eCCCccccccHHHHHHh---hcccccCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcchhcee
Confidence 34444455555544443 344455789999999999999999988 4 899999999999999999999999999999
Q ss_pred EEEccccCCCC----CCCcccccccccccchHH-----HHHHHhcCch--hhHHHHHHHHHHHHHHhccCCCeeEEeec
Q 018261 109 VIQGDVLKTDL----PYFDICVANIPYQISSPL-----TFKLLFHQPA--FRCAIIMFQKEFAMRLVAQPGDKLYCRLS 176 (359)
Q Consensus 109 ~i~~D~~~~~l----~~fD~VvsNlPy~i~s~i-----i~~ll~~~~~--~~~~~~~~qkE~a~Rlv~kpGg~~y~~ls 176 (359)
++++|+.++.. ..||+||||+||+-.... .....+|... +...+ ..+.+ +++|||.++..+.
T Consensus 99 v~~~Di~~~~~~~~~~~fD~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i-----~~a~~-~lk~~G~l~~V~r 171 (248)
T COG4123 99 VIEADIKEFLKALVFASFDLIICNPPYFKQGSRLNENPLRAIARHEITLDLEDLI-----RAAAK-LLKPGGRLAFVHR 171 (248)
T ss_pred EehhhHHHhhhcccccccCEEEeCCCCCCCccccCcChhhhhhhhhhcCCHHHHH-----HHHHH-HccCCCEEEEEec
Confidence 99999987653 259999999999854322 2222222111 11111 22333 7899999886654
No 17
>PHA03412 putative methyltransferase; Provisional
Probab=99.50 E-value=1.3e-13 Score=127.03 Aligned_cols=100 Identities=18% Similarity=0.301 Sum_probs=81.8
Q ss_pred ccccccCCCcccccCHHHHHHHHHHcCCCCCCEEEEEcCcccHHHHHHHHc-----CCeEEEEeCCHHHHHHHHHHhhcC
Q 018261 27 GISFHKSKGQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEA-----GKMVIAVELDSRMVLELQRRFQST 101 (359)
Q Consensus 27 ~~~~~k~~GQ~fl~d~~v~~~iv~~~~~~~~~~VLDIGcGtG~lt~~La~~-----~~~V~avDid~~~i~~a~~~~~~~ 101 (359)
.+.-++++||.| ++..+++.++... ..+.+|||+|||+|.++..+++. ..+|+|||+|+.++..|+++..
T Consensus 23 ~~~~~~~~GqFf-TP~~iAr~~~i~~--~~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~-- 97 (241)
T PHA03412 23 AFTNNSELGAFF-TPIGLARDFTIDA--CTSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVP-- 97 (241)
T ss_pred cccccccCCccC-CCHHHHHHHHHhc--cCCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhcc--
Confidence 556678889855 8999988876432 34679999999999999998864 3589999999999999998752
Q ss_pred CCCCCeEEEEccccCCCCC-CCcccccccccccch
Q 018261 102 PYSNRLKVIQGDVLKTDLP-YFDICVANIPYQISS 135 (359)
Q Consensus 102 ~~~~~v~~i~~D~~~~~l~-~fD~VvsNlPy~i~s 135 (359)
++.++++|+....+. .||+||+|+||....
T Consensus 98 ----~~~~~~~D~~~~~~~~~FDlIIsNPPY~~~~ 128 (241)
T PHA03412 98 ----EATWINADALTTEFDTLFDMAISNPPFGKIK 128 (241)
T ss_pred ----CCEEEEcchhcccccCCccEEEECCCCCCcc
Confidence 578999999876544 799999999999644
No 18
>PLN02244 tocopherol O-methyltransferase
Probab=99.48 E-value=5.5e-13 Score=130.48 Aligned_cols=115 Identities=23% Similarity=0.334 Sum_probs=90.7
Q ss_pred HHHHHHHHHcCC-----CCCCEEEEEcCcccHHHHHHHHc-CCeEEEEeCCHHHHHHHHHHhhcCCCCCCeEEEEccccC
Q 018261 43 LLVESIVQKAGI-----KSTDVILEIGPGTGNLTKKLLEA-GKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLK 116 (359)
Q Consensus 43 ~v~~~iv~~~~~-----~~~~~VLDIGcGtG~lt~~La~~-~~~V~avDid~~~i~~a~~~~~~~~~~~~v~~i~~D~~~ 116 (359)
.+++.+++.+.+ .++++|||||||+|.++..|++. +.+|+|||+|+.|++.++++....++..+++++++|+.+
T Consensus 100 ~~~~~~l~~~~~~~~~~~~~~~VLDiGCG~G~~~~~La~~~g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~ 179 (340)
T PLN02244 100 RMIEESLAWAGVPDDDEKRPKRIVDVGCGIGGSSRYLARKYGANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALN 179 (340)
T ss_pred HHHHHHHHhcCCCcccCCCCCeEEEecCCCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCccc
Confidence 567778888877 67889999999999999999986 789999999999999999988776665689999999998
Q ss_pred CCCC--CCcccccccccccchHHHHHHHhcCchhhHHHHHHHHHHHHHHhccCCCeeEEe
Q 018261 117 TDLP--YFDICVANIPYQISSPLTFKLLFHQPAFRCAIIMFQKEFAMRLVAQPGDKLYCR 174 (359)
Q Consensus 117 ~~l~--~fD~VvsNlPy~i~s~ii~~ll~~~~~~~~~~~~~qkE~a~Rlv~kpGg~~y~~ 174 (359)
++++ .||+|+++.. +.|.++....+ +|+. | +++|||.++..
T Consensus 180 ~~~~~~~FD~V~s~~~-----------~~h~~d~~~~l----~e~~-r-vLkpGG~lvi~ 222 (340)
T PLN02244 180 QPFEDGQFDLVWSMES-----------GEHMPDKRKFV----QELA-R-VAAPGGRIIIV 222 (340)
T ss_pred CCCCCCCccEEEECCc-----------hhccCCHHHHH----HHHH-H-HcCCCcEEEEE
Confidence 7754 7999998653 23333333232 4554 3 88999998753
No 19
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=99.47 E-value=5.6e-13 Score=125.92 Aligned_cols=133 Identities=20% Similarity=0.280 Sum_probs=102.0
Q ss_pred CCccccccccCCCcccccCH--HHHHHHHHHcCCCCCCEEEEEcCcccHHHHHHHHc-CCeEEEEeCCHHHHHHHHHHhh
Q 018261 23 LGAGGISFHKSKGQHILKNP--LLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEA-GKMVIAVELDSRMVLELQRRFQ 99 (359)
Q Consensus 23 ~~~~~~~~~k~~GQ~fl~d~--~v~~~iv~~~~~~~~~~VLDIGcGtG~lt~~La~~-~~~V~avDid~~~i~~a~~~~~ 99 (359)
......+..+-+|.+|+... .....++..+.+.++.+|||||||+|..+..|++. +.+|+++|+++.|+..|+++..
T Consensus 17 ~~~~~~~~e~~~g~~~~~~gg~~~~~~~l~~l~l~~~~~VLDiGcG~G~~a~~la~~~~~~v~giD~s~~~~~~a~~~~~ 96 (263)
T PTZ00098 17 SDEGIKAYEFIFGEDYISSGGIEATTKILSDIELNENSKVLDIGSGLGGGCKYINEKYGAHVHGVDICEKMVNIAKLRNS 96 (263)
T ss_pred ccccchhHHHHhCCCCCCCCchHHHHHHHHhCCCCCCCEEEEEcCCCChhhHHHHhhcCCEEEEEECCHHHHHHHHHHcC
Confidence 44457788888999999886 44788899999999999999999999999999865 6799999999999999999875
Q ss_pred cCCCCCCeEEEEccccCCCCC--CCcccccccc-cccchHHHHHHHhcCchhhHHHHHHHHHHHHHHhccCCCeeEEe
Q 018261 100 STPYSNRLKVIQGDVLKTDLP--YFDICVANIP-YQISSPLTFKLLFHQPAFRCAIIMFQKEFAMRLVAQPGDKLYCR 174 (359)
Q Consensus 100 ~~~~~~~v~~i~~D~~~~~l~--~fD~VvsNlP-y~i~s~ii~~ll~~~~~~~~~~~~~qkE~a~Rlv~kpGg~~y~~ 174 (359)
.. .++.++++|+.+.+++ .||+|+++.. +++... .....+ +++.+ +++|||.++..
T Consensus 97 ~~---~~i~~~~~D~~~~~~~~~~FD~V~s~~~l~h~~~~----------d~~~~l----~~i~r--~LkPGG~lvi~ 155 (263)
T PTZ00098 97 DK---NKIEFEANDILKKDFPENTFDMIYSRDAILHLSYA----------DKKKLF----EKCYK--WLKPNGILLIT 155 (263)
T ss_pred cC---CceEEEECCcccCCCCCCCeEEEEEhhhHHhCCHH----------HHHHHH----HHHHH--HcCCCcEEEEE
Confidence 43 3799999999876654 7999998532 122110 111222 45543 89999998754
No 20
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=99.46 E-value=8.4e-13 Score=130.28 Aligned_cols=126 Identities=16% Similarity=0.246 Sum_probs=91.0
Q ss_pred HHHHHHcCCCCCCEEEEEcCcccHHHHHHHHc--CCeEEEEeCCHHHHHHHHHHhhcCCCC--CCeEEEEccccCCC-CC
Q 018261 46 ESIVQKAGIKSTDVILEIGPGTGNLTKKLLEA--GKMVIAVELDSRMVLELQRRFQSTPYS--NRLKVIQGDVLKTD-LP 120 (359)
Q Consensus 46 ~~iv~~~~~~~~~~VLDIGcGtG~lt~~La~~--~~~V~avDid~~~i~~a~~~~~~~~~~--~~v~~i~~D~~~~~-l~ 120 (359)
+.+++.+......+|||+|||+|.++..+++. ..+|+++|+|+.|++.+++++..+... .+++++.+|+++.. ..
T Consensus 218 rllL~~lp~~~~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~~~~~~ 297 (378)
T PRK15001 218 RFFMQHLPENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSGVEPF 297 (378)
T ss_pred HHHHHhCCcccCCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEccccccCCCC
Confidence 44666776555679999999999999999987 479999999999999999998766432 26899999987633 23
Q ss_pred CCcccccccccccch----HHHHHHHhcCchhhHHHHHHHHHHHHHHhccCCCeeEEeecchhhhHHhhhh
Q 018261 121 YFDICVANIPYQISS----PLTFKLLFHQPAFRCAIIMFQKEFAMRLVAQPGDKLYCRLSVNTQLHARVSH 187 (359)
Q Consensus 121 ~fD~VvsNlPy~i~s----~ii~~ll~~~~~~~~~~~~~qkE~a~Rlv~kpGg~~y~~lsv~~q~~~~v~~ 187 (359)
.||+|+||+||+... .+...+ + ++ +.| +++|||.+|....-...+...++.
T Consensus 298 ~fDlIlsNPPfh~~~~~~~~ia~~l-------------~-~~-a~~-~LkpGG~L~iV~nr~l~y~~~L~~ 352 (378)
T PRK15001 298 RFNAVLCNPPFHQQHALTDNVAWEM-------------F-HH-ARR-CLKINGELYIVANRHLDYFHKLKK 352 (378)
T ss_pred CEEEEEECcCcccCccCCHHHHHHH-------------H-HH-HHH-hcccCCEEEEEEecCcCHHHHHHH
Confidence 799999999998542 222111 1 22 223 789999998775444444444433
No 21
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=99.46 E-value=1.2e-12 Score=127.50 Aligned_cols=129 Identities=22% Similarity=0.252 Sum_probs=98.8
Q ss_pred ccCHHHHHHHHHHcCCCCCCEEEEEcCcccHHHHHHHHcCCeEEEEeCCHHHHHHHHHHhhcCCCCCCeEEEEccccCCC
Q 018261 39 LKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEAGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTD 118 (359)
Q Consensus 39 l~d~~v~~~iv~~~~~~~~~~VLDIGcGtG~lt~~La~~~~~V~avDid~~~i~~a~~~~~~~~~~~~v~~i~~D~~~~~ 118 (359)
..++.++..|+..+.+.++.+|||+|||+|.++..++..+.+|+|+|+|+.|+..+++++..+++. ++.++++|+.+++
T Consensus 165 ~l~~~la~~~~~l~~~~~g~~vLDp~cGtG~~lieaa~~~~~v~g~Di~~~~~~~a~~nl~~~g~~-~i~~~~~D~~~l~ 243 (329)
T TIGR01177 165 SMDPKLARAMVNLARVTEGDRVLDPFCGTGGFLIEAGLMGAKVIGCDIDWKMVAGARINLEHYGIE-DFFVKRGDATKLP 243 (329)
T ss_pred CCCHHHHHHHHHHhCCCCcCEEEECCCCCCHHHHHHHHhCCeEEEEcCCHHHHHHHHHHHHHhCCC-CCeEEecchhcCC
Confidence 357889999999999999999999999999999998888999999999999999999999887765 4889999999877
Q ss_pred CC--CCcccccccccccchHHHHHHHhcCchhhHHHHHHHHHHHHHHhccCCCeeEEeec
Q 018261 119 LP--YFDICVANIPYQISSPLTFKLLFHQPAFRCAIIMFQKEFAMRLVAQPGDKLYCRLS 176 (359)
Q Consensus 119 l~--~fD~VvsNlPy~i~s~ii~~ll~~~~~~~~~~~~~qkE~a~Rlv~kpGg~~y~~ls 176 (359)
++ .||.|++|+||...+..-..... ......+ .++. | +++|||.+...++
T Consensus 244 ~~~~~~D~Iv~dPPyg~~~~~~~~~~~--~l~~~~l----~~~~-r-~Lk~gG~lv~~~~ 295 (329)
T TIGR01177 244 LSSESVDAIATDPPYGRSTTAAGDGLE--SLYERSL----EEFH-E-VLKSEGWIVYAVP 295 (329)
T ss_pred cccCCCCEEEECCCCcCcccccCCchH--HHHHHHH----HHHH-H-HccCCcEEEEEEc
Confidence 63 79999999999865422100000 0011111 3443 3 7899998765544
No 22
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=99.46 E-value=8.7e-13 Score=119.31 Aligned_cols=108 Identities=15% Similarity=0.201 Sum_probs=82.7
Q ss_pred HHHHcCCCCCCEEEEEcCcccHHHHHHHHcCCeEEEEeCCHHHHHHHHHHhhcCCCCCCeEEEEccccCCCCC-CCcccc
Q 018261 48 IVQKAGIKSTDVILEIGPGTGNLTKKLLEAGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTDLP-YFDICV 126 (359)
Q Consensus 48 iv~~~~~~~~~~VLDIGcGtG~lt~~La~~~~~V~avDid~~~i~~a~~~~~~~~~~~~v~~i~~D~~~~~l~-~fD~Vv 126 (359)
+++.+...++.+|||+|||+|.++..|++.+.+|+|+|+|+.|++.++++....++. +++++.+|+.+++++ .||+|+
T Consensus 22 l~~~l~~~~~~~vLDiGcG~G~~a~~La~~g~~V~gvD~S~~~i~~a~~~~~~~~~~-~v~~~~~d~~~~~~~~~fD~I~ 100 (197)
T PRK11207 22 VLEAVKVVKPGKTLDLGCGNGRNSLYLAANGFDVTAWDKNPMSIANLERIKAAENLD-NLHTAVVDLNNLTFDGEYDFIL 100 (197)
T ss_pred HHHhcccCCCCcEEEECCCCCHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHcCCC-cceEEecChhhCCcCCCcCEEE
Confidence 444555667789999999999999999999999999999999999999988766553 688999999876654 799999
Q ss_pred cccccccchH-HHHHHHhcCchhhHHHHHHHHHHHHHHhccCCCeeE
Q 018261 127 ANIPYQISSP-LTFKLLFHQPAFRCAIIMFQKEFAMRLVAQPGDKLY 172 (359)
Q Consensus 127 sNlPy~i~s~-ii~~ll~~~~~~~~~~~~~qkE~a~Rlv~kpGg~~y 172 (359)
++..+++.++ ....++ +++++ +++|||.++
T Consensus 101 ~~~~~~~~~~~~~~~~l--------------~~i~~--~LkpgG~~~ 131 (197)
T PRK11207 101 STVVLMFLEAKTIPGLI--------------ANMQR--CTKPGGYNL 131 (197)
T ss_pred EecchhhCCHHHHHHHH--------------HHHHH--HcCCCcEEE
Confidence 9876554322 111111 34433 789999864
No 23
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=99.45 E-value=1.3e-12 Score=116.02 Aligned_cols=85 Identities=27% Similarity=0.360 Sum_probs=71.8
Q ss_pred HHHcCCCCCCEEEEEcCcccHHHHHHHHcCCeEEEEeCCHHHHHHHHHHhhcCCCCCCeEEEEccccCCCCCCCcccccc
Q 018261 49 VQKAGIKSTDVILEIGPGTGNLTKKLLEAGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTDLPYFDICVAN 128 (359)
Q Consensus 49 v~~~~~~~~~~VLDIGcGtG~lt~~La~~~~~V~avDid~~~i~~a~~~~~~~~~~~~v~~i~~D~~~~~l~~fD~VvsN 128 (359)
.+.+...++.+|||+|||+|.++..+++.+.+|+++|+|+.|++.+++++..++. +++++++|+.+...+.||+|++|
T Consensus 12 ~~~l~~~~~~~vLdlG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~~~fD~Vi~n 89 (179)
T TIGR00537 12 EANLRELKPDDVLEIGAGTGLVAIRLKGKGKCILTTDINPFAVKELRENAKLNNV--GLDVVMTDLFKGVRGKFDVILFN 89 (179)
T ss_pred HHHHHhcCCCeEEEeCCChhHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHHcCC--ceEEEEcccccccCCcccEEEEC
Confidence 3444445668999999999999999999887999999999999999999876653 68899999987655689999999
Q ss_pred cccccch
Q 018261 129 IPYQISS 135 (359)
Q Consensus 129 lPy~i~s 135 (359)
+||+..+
T Consensus 90 ~p~~~~~ 96 (179)
T TIGR00537 90 PPYLPLE 96 (179)
T ss_pred CCCCCCc
Confidence 9997543
No 24
>PRK14967 putative methyltransferase; Provisional
Probab=99.43 E-value=1.9e-12 Score=119.16 Aligned_cols=94 Identities=24% Similarity=0.379 Sum_probs=77.3
Q ss_pred CHHHHHHHHHHcCCCCCCEEEEEcCcccHHHHHHHHcCC-eEEEEeCCHHHHHHHHHHhhcCCCCCCeEEEEccccCCC-
Q 018261 41 NPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEAGK-MVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTD- 118 (359)
Q Consensus 41 d~~v~~~iv~~~~~~~~~~VLDIGcGtG~lt~~La~~~~-~V~avDid~~~i~~a~~~~~~~~~~~~v~~i~~D~~~~~- 118 (359)
+..++..++..+.+.++++|||+|||+|.++..+++.+. +|+++|+|+.++..+++++..++. +++++++|+.+..
T Consensus 21 ds~~l~~~l~~~~~~~~~~vLDlGcG~G~~~~~la~~~~~~v~~vD~s~~~l~~a~~n~~~~~~--~~~~~~~d~~~~~~ 98 (223)
T PRK14967 21 DTQLLADALAAEGLGPGRRVLDLCTGSGALAVAAAAAGAGSVTAVDISRRAVRSARLNALLAGV--DVDVRRGDWARAVE 98 (223)
T ss_pred cHHHHHHHHHhcccCCCCeEEEecCCHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHhCC--eeEEEECchhhhcc
Confidence 445566666666777889999999999999999998764 999999999999999999876653 6889999997642
Q ss_pred CCCCcccccccccccchH
Q 018261 119 LPYFDICVANIPYQISSP 136 (359)
Q Consensus 119 l~~fD~VvsNlPy~i~s~ 136 (359)
...||+|++|+||..+++
T Consensus 99 ~~~fD~Vi~npPy~~~~~ 116 (223)
T PRK14967 99 FRPFDVVVSNPPYVPAPP 116 (223)
T ss_pred CCCeeEEEECCCCCCCCc
Confidence 237999999999986643
No 25
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=99.43 E-value=1.3e-12 Score=117.99 Aligned_cols=109 Identities=14% Similarity=0.145 Sum_probs=81.5
Q ss_pred HHHHHcCCCCCCEEEEEcCcccHHHHHHHHcCCeEEEEeCCHHHHHHHHHHhhcCCCCCCeEEEEccccCCCCC-CCccc
Q 018261 47 SIVQKAGIKSTDVILEIGPGTGNLTKKLLEAGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTDLP-YFDIC 125 (359)
Q Consensus 47 ~iv~~~~~~~~~~VLDIGcGtG~lt~~La~~~~~V~avDid~~~i~~a~~~~~~~~~~~~v~~i~~D~~~~~l~-~fD~V 125 (359)
.+++.+...++.+|||+|||+|.++..|++.+.+|+|+|+|+.|++.++++....++ ++++..+|+...+++ .||+|
T Consensus 21 ~l~~~~~~~~~~~vLDiGcG~G~~a~~la~~g~~V~~iD~s~~~l~~a~~~~~~~~~--~v~~~~~d~~~~~~~~~fD~I 98 (195)
T TIGR00477 21 AVREAVKTVAPCKTLDLGCGQGRNSLYLSLAGYDVRAWDHNPASIASVLDMKARENL--PLRTDAYDINAAALNEDYDFI 98 (195)
T ss_pred HHHHHhccCCCCcEEEeCCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHHHHHhCC--CceeEeccchhccccCCCCEE
Confidence 445555666678999999999999999999999999999999999999988766554 477788887665543 79999
Q ss_pred ccccccccchH-HHHHHHhcCchhhHHHHHHHHHHHHHHhccCCCeeEE
Q 018261 126 VANIPYQISSP-LTFKLLFHQPAFRCAIIMFQKEFAMRLVAQPGDKLYC 173 (359)
Q Consensus 126 vsNlPy~i~s~-ii~~ll~~~~~~~~~~~~~qkE~a~Rlv~kpGg~~y~ 173 (359)
+++.+++..++ ....++ +++. | +++|||.++.
T Consensus 99 ~~~~~~~~~~~~~~~~~l--------------~~~~-~-~LkpgG~lli 131 (195)
T TIGR00477 99 FSTVVFMFLQAGRVPEII--------------ANMQ-A-HTRPGGYNLI 131 (195)
T ss_pred EEecccccCCHHHHHHHH--------------HHHH-H-HhCCCcEEEE
Confidence 99988765432 121221 3333 3 7899998653
No 26
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.41 E-value=1.4e-12 Score=112.77 Aligned_cols=103 Identities=28% Similarity=0.407 Sum_probs=80.1
Q ss_pred CCCCEEEEEcCcccHHHHHHHH-c--CCeEEEEeCCHHHHHHHHHHhhcCCCCCCeEEEEccccCCC--C-CCCcccccc
Q 018261 55 KSTDVILEIGPGTGNLTKKLLE-A--GKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTD--L-PYFDICVAN 128 (359)
Q Consensus 55 ~~~~~VLDIGcGtG~lt~~La~-~--~~~V~avDid~~~i~~a~~~~~~~~~~~~v~~i~~D~~~~~--l-~~fD~VvsN 128 (359)
..+.+|||+|||+|.++..|++ . +.+|+|||+++.|++.|++++...++. +++++++|+.+++ + ..||+|+++
T Consensus 2 ~~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~-ni~~~~~d~~~l~~~~~~~~D~I~~~ 80 (152)
T PF13847_consen 2 KSNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLD-NIEFIQGDIEDLPQELEEKFDIIISN 80 (152)
T ss_dssp TTTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTST-TEEEEESBTTCGCGCSSTTEEEEEEE
T ss_pred CCCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhccccccccc-ccceEEeehhccccccCCCeeEEEEc
Confidence 4578999999999999999994 3 589999999999999999998877765 8999999999977 5 489999999
Q ss_pred cccccchHHHHHHHhcCchhhHHHHHHHHHHHHHHhccCCCeeEEee
Q 018261 129 IPYQISSPLTFKLLFHQPAFRCAIIMFQKEFAMRLVAQPGDKLYCRL 175 (359)
Q Consensus 129 lPy~i~s~ii~~ll~~~~~~~~~~~~~qkE~a~Rlv~kpGg~~y~~l 175 (359)
.+++...+.. ..+ +++. + ++++||.++...
T Consensus 81 ~~l~~~~~~~-----------~~l----~~~~-~-~lk~~G~~i~~~ 110 (152)
T PF13847_consen 81 GVLHHFPDPE-----------KVL----KNII-R-LLKPGGILIISD 110 (152)
T ss_dssp STGGGTSHHH-----------HHH----HHHH-H-HEEEEEEEEEEE
T ss_pred CchhhccCHH-----------HHH----HHHH-H-HcCCCcEEEEEE
Confidence 8765443321 111 2332 3 789999887543
No 27
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=99.41 E-value=2.7e-12 Score=120.04 Aligned_cols=105 Identities=17% Similarity=0.277 Sum_probs=80.9
Q ss_pred CCCCCEEEEEcCcccHHHHHHHHc----CCeEEEEeCCHHHHHHHHHHhhcCCCCCCeEEEEccccCCCCCCCccccccc
Q 018261 54 IKSTDVILEIGPGTGNLTKKLLEA----GKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTDLPYFDICVANI 129 (359)
Q Consensus 54 ~~~~~~VLDIGcGtG~lt~~La~~----~~~V~avDid~~~i~~a~~~~~~~~~~~~v~~i~~D~~~~~l~~fD~VvsNl 129 (359)
+.++.+|||||||+|.++..|++. +.+|+|+|+|+.|++.|++++...+...+++++++|+.+++++.+|+|+++.
T Consensus 54 ~~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~~~~D~vv~~~ 133 (247)
T PRK15451 54 VQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIENASMVVLNF 133 (247)
T ss_pred CCCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCCCCCCEEehhh
Confidence 457789999999999999988872 5799999999999999999987765555899999999988877899999987
Q ss_pred ccccchHHHHHHHhcCchhhHHHHHHHHHHHHHHhccCCCeeEE
Q 018261 130 PYQISSPLTFKLLFHQPAFRCAIIMFQKEFAMRLVAQPGDKLYC 173 (359)
Q Consensus 130 Py~i~s~ii~~ll~~~~~~~~~~~~~qkE~a~Rlv~kpGg~~y~ 173 (359)
.++...+.- ....+ +++.+ +++|||.++.
T Consensus 134 ~l~~l~~~~---------~~~~l----~~i~~--~LkpGG~l~l 162 (247)
T PRK15451 134 TLQFLEPSE---------RQALL----DKIYQ--GLNPGGALVL 162 (247)
T ss_pred HHHhCCHHH---------HHHHH----HHHHH--hcCCCCEEEE
Confidence 654332211 11111 44543 7899998764
No 28
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.41 E-value=5e-12 Score=115.05 Aligned_cols=97 Identities=22% Similarity=0.272 Sum_probs=81.0
Q ss_pred CCcccccCHHHHHHHHHHcCCCCCCEEEEEcCcccHHHHHHHHc---CCeEEEEeCCHHHHHHHHHHhhcCCCCCCeEEE
Q 018261 34 KGQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEA---GKMVIAVELDSRMVLELQRRFQSTPYSNRLKVI 110 (359)
Q Consensus 34 ~GQ~fl~d~~v~~~iv~~~~~~~~~~VLDIGcGtG~lt~~La~~---~~~V~avDid~~~i~~a~~~~~~~~~~~~v~~i 110 (359)
.|+.+ ..+.+...+++.+.+.++++|||||||+|.++..+++. ..+|+++|+++.+++.|++++...++..+++++
T Consensus 51 ~~~~~-~~p~~~~~~~~~l~~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~ 129 (205)
T PRK13944 51 AGATI-SAPHMVAMMCELIEPRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVY 129 (205)
T ss_pred CCCEe-chHHHHHHHHHhcCCCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEE
Confidence 45544 56888999999999889999999999999999998875 368999999999999999998877665579999
Q ss_pred EccccCCCC--CCCccccccccc
Q 018261 111 QGDVLKTDL--PYFDICVANIPY 131 (359)
Q Consensus 111 ~~D~~~~~l--~~fD~VvsNlPy 131 (359)
++|+.+... ..||+|+++.+.
T Consensus 130 ~~d~~~~~~~~~~fD~Ii~~~~~ 152 (205)
T PRK13944 130 HGDGKRGLEKHAPFDAIIVTAAA 152 (205)
T ss_pred ECCcccCCccCCCccEEEEccCc
Confidence 999986432 379999988653
No 29
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.41 E-value=2e-12 Score=121.37 Aligned_cols=112 Identities=17% Similarity=0.254 Sum_probs=85.4
Q ss_pred HHHHHHHcCCCCCCEEEEEcCcccHHHHHHHHcCCeEEEEeCCHHHHHHHHHHhhcCCCCCCeEEEEccccCCC---CCC
Q 018261 45 VESIVQKAGIKSTDVILEIGPGTGNLTKKLLEAGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTD---LPY 121 (359)
Q Consensus 45 ~~~iv~~~~~~~~~~VLDIGcGtG~lt~~La~~~~~V~avDid~~~i~~a~~~~~~~~~~~~v~~i~~D~~~~~---l~~ 121 (359)
+..+++.+. ..+.+|||||||+|.++..|++.+.+|+++|+|+.|++.|+++....++..+++++++|+.++. ...
T Consensus 34 ~~~~l~~l~-~~~~~vLDiGcG~G~~a~~la~~g~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~~~~ 112 (255)
T PRK11036 34 LDRLLAELP-PRPLRVLDAGGGEGQTAIKLAELGHQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHLETP 112 (255)
T ss_pred HHHHHHhcC-CCCCEEEEeCCCchHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhcCCC
Confidence 345666665 4567999999999999999999999999999999999999999887766568999999997753 237
Q ss_pred CcccccccccccchHHHHHHHhcCchhhHHHHHHHHHHHHHHhccCCCeeEEe
Q 018261 122 FDICVANIPYQISSPLTFKLLFHQPAFRCAIIMFQKEFAMRLVAQPGDKLYCR 174 (359)
Q Consensus 122 fD~VvsNlPy~i~s~ii~~ll~~~~~~~~~~~~~qkE~a~Rlv~kpGg~~y~~ 174 (359)
||+|+++..+++. .++..++ +++.+ +++|||.+...
T Consensus 113 fD~V~~~~vl~~~-----------~~~~~~l----~~~~~--~LkpgG~l~i~ 148 (255)
T PRK11036 113 VDLILFHAVLEWV-----------ADPKSVL----QTLWS--VLRPGGALSLM 148 (255)
T ss_pred CCEEEehhHHHhh-----------CCHHHHH----HHHHH--HcCCCeEEEEE
Confidence 9999987643322 2222222 34443 88999998643
No 30
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=99.41 E-value=6.6e-13 Score=121.57 Aligned_cols=101 Identities=19% Similarity=0.282 Sum_probs=85.3
Q ss_pred CCCCEEEEEcCcccHHHHHHHHcCCeEEEEeCCHHHHHHHHHHhhcCCCCCCeEEEEccccCCCCC--CCcccccccccc
Q 018261 55 KSTDVILEIGPGTGNLTKKLLEAGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTDLP--YFDICVANIPYQ 132 (359)
Q Consensus 55 ~~~~~VLDIGcGtG~lt~~La~~~~~V~avDid~~~i~~a~~~~~~~~~~~~v~~i~~D~~~~~l~--~fD~VvsNlPy~ 132 (359)
.++.+|||||||-|.|+..||+.|++|+|+|+++.+++.|+.+....++ ++.+.+..++++... +||+|+|
T Consensus 58 l~g~~vLDvGCGgG~Lse~mAr~Ga~VtgiD~se~~I~~Ak~ha~e~gv--~i~y~~~~~edl~~~~~~FDvV~c----- 130 (243)
T COG2227 58 LPGLRVLDVGCGGGILSEPLARLGASVTGIDASEKPIEVAKLHALESGV--NIDYRQATVEDLASAGGQFDVVTC----- 130 (243)
T ss_pred CCCCeEEEecCCccHhhHHHHHCCCeeEEecCChHHHHHHHHhhhhccc--cccchhhhHHHHHhcCCCccEEEE-----
Confidence 4789999999999999999999999999999999999999998877764 466888888776654 8999998
Q ss_pred cchHHHHHHHhcCchhhHHHHHHHHHHHHHHhccCCCeeEEe
Q 018261 133 ISSPLTFKLLFHQPAFRCAIIMFQKEFAMRLVAQPGDKLYCR 174 (359)
Q Consensus 133 i~s~ii~~ll~~~~~~~~~~~~~qkE~a~Rlv~kpGg~~y~~ 174 (359)
+.+++|.+++...+ +..+. ..+|||.++.+
T Consensus 131 ------mEVlEHv~dp~~~~----~~c~~--lvkP~G~lf~S 160 (243)
T COG2227 131 ------MEVLEHVPDPESFL----RACAK--LVKPGGILFLS 160 (243)
T ss_pred ------hhHHHccCCHHHHH----HHHHH--HcCCCcEEEEe
Confidence 78999999988755 45554 67999987644
No 31
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=99.41 E-value=3.7e-13 Score=110.50 Aligned_cols=78 Identities=29% Similarity=0.428 Sum_probs=67.3
Q ss_pred CCEEEEEcCcccHHHHHHHHcC-CeEEEEeCCHHHHHHHHHHhhcCCCCCCeEEEEccccCCC----CCCCccccccccc
Q 018261 57 TDVILEIGPGTGNLTKKLLEAG-KMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTD----LPYFDICVANIPY 131 (359)
Q Consensus 57 ~~~VLDIGcGtG~lt~~La~~~-~~V~avDid~~~i~~a~~~~~~~~~~~~v~~i~~D~~~~~----l~~fD~VvsNlPy 131 (359)
|.+|||+|||+|.++..+++.+ .+++++|+|+.+++.++.++...++..+++++++|+.+.. ...||+|++|+||
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~npP~ 80 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRGAARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPDGKFDLIVTNPPY 80 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHHCTCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTTT-EEEEEE--ST
T ss_pred CCEEEEcCcchHHHHHHHHHHCCCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhccCceeEEEEECCCC
Confidence 4689999999999999999988 9999999999999999999998877678999999998754 3479999999999
Q ss_pred ccc
Q 018261 132 QIS 134 (359)
Q Consensus 132 ~i~ 134 (359)
...
T Consensus 81 ~~~ 83 (117)
T PF13659_consen 81 GPR 83 (117)
T ss_dssp TSB
T ss_pred ccc
Confidence 754
No 32
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=99.40 E-value=6.5e-12 Score=119.98 Aligned_cols=92 Identities=21% Similarity=0.256 Sum_probs=73.0
Q ss_pred HHHHHHH-HcCCCCCCEEEEEcCcccHHHHHHHHc--CCeEEEEeCCHHHHHHHHHHhhcCCCCCCeEEEEccccCCC-C
Q 018261 44 LVESIVQ-KAGIKSTDVILEIGPGTGNLTKKLLEA--GKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTD-L 119 (359)
Q Consensus 44 v~~~iv~-~~~~~~~~~VLDIGcGtG~lt~~La~~--~~~V~avDid~~~i~~a~~~~~~~~~~~~v~~i~~D~~~~~-l 119 (359)
++...+. .+...++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.|++++..+++..+++++++|+.+.- .
T Consensus 108 lv~~~l~~~~~~~~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~~~~~ 187 (284)
T TIGR03533 108 LIEDGFAPWLEPEPVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFAALPG 187 (284)
T ss_pred HHHHHHHHHhccCCCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhccCC
Confidence 3444443 232344579999999999999999986 46999999999999999999988776568999999986532 2
Q ss_pred CCCcccccccccccch
Q 018261 120 PYFDICVANIPYQISS 135 (359)
Q Consensus 120 ~~fD~VvsNlPy~i~s 135 (359)
..||+|++|+||.-..
T Consensus 188 ~~fD~Iv~NPPy~~~~ 203 (284)
T TIGR03533 188 RKYDLIVSNPPYVDAE 203 (284)
T ss_pred CCccEEEECCCCCCcc
Confidence 2699999999997554
No 33
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=99.40 E-value=4e-12 Score=116.41 Aligned_cols=95 Identities=24% Similarity=0.330 Sum_probs=80.6
Q ss_pred CCcccccCHHHHHHHHHHcCCCCCCEEEEEcCcccHHHHHHHHcCC---eEEEEeCCHHHHHHHHHHhhcCCCCCCeEEE
Q 018261 34 KGQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEAGK---MVIAVELDSRMVLELQRRFQSTPYSNRLKVI 110 (359)
Q Consensus 34 ~GQ~fl~d~~v~~~iv~~~~~~~~~~VLDIGcGtG~lt~~La~~~~---~V~avDid~~~i~~a~~~~~~~~~~~~v~~i 110 (359)
.|| .+..+.++..+++.+.+.++.+|||||||+|.++..|++... +|+++|+++.+++.|++++...++ .+++++
T Consensus 56 ~~~-~~~~p~~~~~~~~~l~~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~-~~v~~~ 133 (215)
T TIGR00080 56 YGQ-TISAPHMVAMMTELLELKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGL-DNVIVI 133 (215)
T ss_pred CCC-EechHHHHHHHHHHhCCCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCC-CCeEEE
Confidence 344 457789999999999999999999999999999999998743 599999999999999999988776 489999
Q ss_pred EccccCCC--CCCCcccccccc
Q 018261 111 QGDVLKTD--LPYFDICVANIP 130 (359)
Q Consensus 111 ~~D~~~~~--l~~fD~VvsNlP 130 (359)
++|+.+.. ...||+|+++.+
T Consensus 134 ~~d~~~~~~~~~~fD~Ii~~~~ 155 (215)
T TIGR00080 134 VGDGTQGWEPLAPYDRIYVTAA 155 (215)
T ss_pred ECCcccCCcccCCCCEEEEcCC
Confidence 99997643 237999988754
No 34
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=99.40 E-value=1.3e-12 Score=124.04 Aligned_cols=117 Identities=22% Similarity=0.302 Sum_probs=83.7
Q ss_pred HHHHHHHHHHcCCCCCCEEEEEcCcccHHHHHHHHc-CCeEEEEeCCHHHHHHHHHHhhcCCCCCCeEEEEccccCCCCC
Q 018261 42 PLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEA-GKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTDLP 120 (359)
Q Consensus 42 ~~v~~~iv~~~~~~~~~~VLDIGcGtG~lt~~La~~-~~~V~avDid~~~i~~a~~~~~~~~~~~~v~~i~~D~~~~~l~ 120 (359)
.+.++.+++++++.++++|||||||.|.++..++++ +.+|+||.+|+...+.+++++...++.+++++..+|..+++.
T Consensus 48 ~~k~~~~~~~~~l~~G~~vLDiGcGwG~~~~~~a~~~g~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~~~- 126 (273)
T PF02353_consen 48 ERKLDLLCEKLGLKPGDRVLDIGCGWGGLAIYAAERYGCHVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRDLPG- 126 (273)
T ss_dssp HHHHHHHHTTTT--TT-EEEEES-TTSHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG----
T ss_pred HHHHHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHcCcEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeeccccCC-
Confidence 345678888999999999999999999999999998 999999999999999999999988888899999999988764
Q ss_pred CCcccccccccccchHHHHHHHhcCchhhHHHHHHHHHHHHHHhccCCCeeEEe
Q 018261 121 YFDICVANIPYQISSPLTFKLLFHQPAFRCAIIMFQKEFAMRLVAQPGDKLYCR 174 (359)
Q Consensus 121 ~fD~VvsNlPy~i~s~ii~~ll~~~~~~~~~~~~~qkE~a~Rlv~kpGg~~y~~ 174 (359)
.||.|||-- +++|........++ +.+. | +++|||.++..
T Consensus 127 ~fD~IvSi~-----------~~Ehvg~~~~~~~f--~~~~-~-~LkpgG~~~lq 165 (273)
T PF02353_consen 127 KFDRIVSIE-----------MFEHVGRKNYPAFF--RKIS-R-LLKPGGRLVLQ 165 (273)
T ss_dssp S-SEEEEES-----------EGGGTCGGGHHHHH--HHHH-H-HSETTEEEEEE
T ss_pred CCCEEEEEe-----------chhhcChhHHHHHH--HHHH-H-hcCCCcEEEEE
Confidence 899999832 45665332221111 3333 3 78999998654
No 35
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=99.39 E-value=2.2e-12 Score=125.01 Aligned_cols=103 Identities=17% Similarity=0.172 Sum_probs=82.7
Q ss_pred CCCCEEEEEcCcccHHHHHHHHcCCeEEEEeCCHHHHHHHHHHhhcCCCCCCeEEEEccccCCCCC--CCcccccccccc
Q 018261 55 KSTDVILEIGPGTGNLTKKLLEAGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTDLP--YFDICVANIPYQ 132 (359)
Q Consensus 55 ~~~~~VLDIGcGtG~lt~~La~~~~~V~avDid~~~i~~a~~~~~~~~~~~~v~~i~~D~~~~~l~--~fD~VvsNlPy~ 132 (359)
.++.+|||||||+|.++..|++.+.+|+|||+++.|++.|+++....+...+++++++|+.+++.+ .||+|++
T Consensus 130 ~~g~~ILDIGCG~G~~s~~La~~g~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~~~~~FD~Vi~----- 204 (322)
T PLN02396 130 FEGLKFIDIGCGGGLLSEPLARMGATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLADEGRKFDAVLS----- 204 (322)
T ss_pred CCCCEEEEeeCCCCHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhhccCCCCEEEE-----
Confidence 356799999999999999999889999999999999999998865444334799999999887543 7999998
Q ss_pred cchHHHHHHHhcCchhhHHHHHHHHHHHHHHhccCCCeeEEe
Q 018261 133 ISSPLTFKLLFHQPAFRCAIIMFQKEFAMRLVAQPGDKLYCR 174 (359)
Q Consensus 133 i~s~ii~~ll~~~~~~~~~~~~~qkE~a~Rlv~kpGg~~y~~ 174 (359)
..+++|..++...+ +++.+ +++|||.++..
T Consensus 205 ------~~vLeHv~d~~~~L----~~l~r--~LkPGG~liis 234 (322)
T PLN02396 205 ------LEVIEHVANPAEFC----KSLSA--LTIPNGATVLS 234 (322)
T ss_pred ------hhHHHhcCCHHHHH----HHHHH--HcCCCcEEEEE
Confidence 34677766665554 56653 78999988755
No 36
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.39 E-value=5.5e-12 Score=116.18 Aligned_cols=115 Identities=16% Similarity=0.317 Sum_probs=89.2
Q ss_pred cCHHHHHHHHHHcCCCCCCEEEEEcCcccHHHHHHHHc---CCeEEEEeCCHHHHHHHHHHhhcCCCCCCeEEEEccccC
Q 018261 40 KNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEA---GKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLK 116 (359)
Q Consensus 40 ~d~~v~~~iv~~~~~~~~~~VLDIGcGtG~lt~~La~~---~~~V~avDid~~~i~~a~~~~~~~~~~~~v~~i~~D~~~ 116 (359)
....+.+.++..+.+.++.+|||||||+|.++..+++. +.+|+++|+++.+++.+++++...+. .+++++++|+.+
T Consensus 29 ~~~~~~~~~l~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~ 107 (231)
T TIGR02752 29 RHKKWRKDTMKRMNVQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGL-HNVELVHGNAME 107 (231)
T ss_pred chHHHHHHHHHhcCCCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCC-CceEEEEechhc
Confidence 35666778888888888999999999999999999876 36999999999999999999876554 379999999988
Q ss_pred CCCC--CCcccccccccccchHHHHHHHhcCchhhHHHHHHHHHHHHHHhccCCCeeE
Q 018261 117 TDLP--YFDICVANIPYQISSPLTFKLLFHQPAFRCAIIMFQKEFAMRLVAQPGDKLY 172 (359)
Q Consensus 117 ~~l~--~fD~VvsNlPy~i~s~ii~~ll~~~~~~~~~~~~~qkE~a~Rlv~kpGg~~y 172 (359)
++++ .||+|+++.+++..++. ...+ +++. | +++|||.+.
T Consensus 108 ~~~~~~~fD~V~~~~~l~~~~~~-----------~~~l----~~~~-~-~Lk~gG~l~ 148 (231)
T TIGR02752 108 LPFDDNSFDYVTIGFGLRNVPDY-----------MQVL----REMY-R-VVKPGGKVV 148 (231)
T ss_pred CCCCCCCccEEEEecccccCCCH-----------HHHH----HHHH-H-HcCcCeEEE
Confidence 7654 79999988765543322 1111 3443 3 789999765
No 37
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=99.39 E-value=2.4e-12 Score=120.74 Aligned_cols=107 Identities=21% Similarity=0.339 Sum_probs=83.0
Q ss_pred HHHHHHHHcCCCCCCEEEEEcCcccHHHHHHHHc--CCeEEEEeCCHHHHHHHHHHhhcCCCCCCeEEEEccccCCCC-C
Q 018261 44 LVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEA--GKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTDL-P 120 (359)
Q Consensus 44 v~~~iv~~~~~~~~~~VLDIGcGtG~lt~~La~~--~~~V~avDid~~~i~~a~~~~~~~~~~~~v~~i~~D~~~~~l-~ 120 (359)
....+++.+...++.+|||||||+|.++..|++. +.+|+|+|+|+.|++.|+++ +++++++|+.++.. +
T Consensus 17 ~~~~ll~~l~~~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~--------~~~~~~~d~~~~~~~~ 88 (255)
T PRK14103 17 PFYDLLARVGAERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARER--------GVDARTGDVRDWKPKP 88 (255)
T ss_pred HHHHHHHhCCCCCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHhc--------CCcEEEcChhhCCCCC
Confidence 3456778888888899999999999999999987 67999999999999999763 57899999987642 3
Q ss_pred CCcccccccccccchHHHHHHHhcCchhhHHHHHHHHHHHHHHhccCCCeeEEee
Q 018261 121 YFDICVANIPYQISSPLTFKLLFHQPAFRCAIIMFQKEFAMRLVAQPGDKLYCRL 175 (359)
Q Consensus 121 ~fD~VvsNlPy~i~s~ii~~ll~~~~~~~~~~~~~qkE~a~Rlv~kpGg~~y~~l 175 (359)
.||+|++|..+++..+ +..++ +++.+ +++|||.+....
T Consensus 89 ~fD~v~~~~~l~~~~d-----------~~~~l----~~~~~--~LkpgG~l~~~~ 126 (255)
T PRK14103 89 DTDVVVSNAALQWVPE-----------HADLL----VRWVD--ELAPGSWIAVQV 126 (255)
T ss_pred CceEEEEehhhhhCCC-----------HHHHH----HHHHH--hCCCCcEEEEEc
Confidence 7999999987665432 22222 34433 789999987653
No 38
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=99.38 E-value=2.7e-12 Score=100.42 Aligned_cols=91 Identities=27% Similarity=0.493 Sum_probs=70.9
Q ss_pred EEEcCcccHHHHHHHHc-CCeEEEEeCCHHHHHHHHHHhhcCCCCCCeEEEEccccCCCCC--CCcccccccccccchHH
Q 018261 61 LEIGPGTGNLTKKLLEA-GKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTDLP--YFDICVANIPYQISSPL 137 (359)
Q Consensus 61 LDIGcGtG~lt~~La~~-~~~V~avDid~~~i~~a~~~~~~~~~~~~v~~i~~D~~~~~l~--~fD~VvsNlPy~i~s~i 137 (359)
||||||+|..+..|++. +.+|+++|+++.+++.++++.... ++.++++|+.+++++ +||+|+++..+++.
T Consensus 1 LdiG~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~~~~~~~~~----~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~~--- 73 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKRGGASVTGIDISEEMLEQARKRLKNE----GVSFRQGDAEDLPFPDNSFDVVFSNSVLHHL--- 73 (95)
T ss_dssp EEET-TTSHHHHHHHHTTTCEEEEEES-HHHHHHHHHHTTTS----TEEEEESBTTSSSS-TT-EEEEEEESHGGGS---
T ss_pred CEecCcCCHHHHHHHhccCCEEEEEeCCHHHHHHHHhccccc----CchheeehHHhCccccccccccccccceeec---
Confidence 89999999999999999 899999999999999999988654 567999999998876 79999998755544
Q ss_pred HHHHHhcCchhhHHHHHHHHHHHHHHhccCCCeeE
Q 018261 138 TFKLLFHQPAFRCAIIMFQKEFAMRLVAQPGDKLY 172 (359)
Q Consensus 138 i~~ll~~~~~~~~~~~~~qkE~a~Rlv~kpGg~~y 172 (359)
.....++ +|+. | +++|||.++
T Consensus 74 --------~~~~~~l----~e~~-r-vLk~gG~l~ 94 (95)
T PF08241_consen 74 --------EDPEAAL----REIY-R-VLKPGGRLV 94 (95)
T ss_dssp --------SHHHHHH----HHHH-H-HEEEEEEEE
T ss_pred --------cCHHHHH----HHHH-H-HcCcCeEEe
Confidence 2233333 5654 3 899999876
No 39
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=99.38 E-value=5.9e-12 Score=120.18 Aligned_cols=95 Identities=23% Similarity=0.298 Sum_probs=74.8
Q ss_pred HHHHHHHHHHcC-CCCCCEEEEEcCcccHHHHHHHHc--CCeEEEEeCCHHHHHHHHHHhhcCCCCCCeEEEEccccCCC
Q 018261 42 PLLVESIVQKAG-IKSTDVILEIGPGTGNLTKKLLEA--GKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTD 118 (359)
Q Consensus 42 ~~v~~~iv~~~~-~~~~~~VLDIGcGtG~lt~~La~~--~~~V~avDid~~~i~~a~~~~~~~~~~~~v~~i~~D~~~~~ 118 (359)
..+++.++..+. ..+..+|||+|||+|.++..++.. ..+|+|+|+|+.++..|++++..+++..+++++++|+.+..
T Consensus 99 e~lv~~~l~~~~~~~~~~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~~~ 178 (284)
T TIGR00536 99 EELVEKALASLISQNPILHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFEPL 178 (284)
T ss_pred HHHHHHHHHHhhhcCCCCEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhccC
Confidence 345555554432 222368999999999999999986 36999999999999999999987776556999999998743
Q ss_pred CC-CCcccccccccccchH
Q 018261 119 LP-YFDICVANIPYQISSP 136 (359)
Q Consensus 119 l~-~fD~VvsNlPy~i~s~ 136 (359)
.. .||+||+|+||.-...
T Consensus 179 ~~~~fDlIvsNPPyi~~~~ 197 (284)
T TIGR00536 179 AGQKIDIIVSNPPYIDEED 197 (284)
T ss_pred cCCCccEEEECCCCCCcch
Confidence 23 7999999999986654
No 40
>PHA03411 putative methyltransferase; Provisional
Probab=99.38 E-value=5.9e-12 Score=118.45 Aligned_cols=93 Identities=20% Similarity=0.316 Sum_probs=76.1
Q ss_pred CCcccccCHHHHHHHHHHcCCCCCCEEEEEcCcccHHHHHHHHc--CCeEEEEeCCHHHHHHHHHHhhcCCCCCCeEEEE
Q 018261 34 KGQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEA--GKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQ 111 (359)
Q Consensus 34 ~GQ~fl~d~~v~~~iv~~~~~~~~~~VLDIGcGtG~lt~~La~~--~~~V~avDid~~~i~~a~~~~~~~~~~~~v~~i~ 111 (359)
.||. ++++.++..++. ......+|||+|||+|.++..++++ +.+|+++|+++.|++.+++++. ++++++
T Consensus 45 ~G~F-fTP~~i~~~f~~--~~~~~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~~------~v~~v~ 115 (279)
T PHA03411 45 SGAF-FTPEGLAWDFTI--DAHCTGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLLP------EAEWIT 115 (279)
T ss_pred ceeE-cCCHHHHHHHHh--ccccCCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCc------CCEEEE
Confidence 5865 588988866542 3345679999999999999988875 4799999999999999998742 688999
Q ss_pred ccccCCCCC-CCcccccccccccch
Q 018261 112 GDVLKTDLP-YFDICVANIPYQISS 135 (359)
Q Consensus 112 ~D~~~~~l~-~fD~VvsNlPy~i~s 135 (359)
+|+.++... .||+|++|+||+...
T Consensus 116 ~D~~e~~~~~kFDlIIsNPPF~~l~ 140 (279)
T PHA03411 116 SDVFEFESNEKFDVVISNPPFGKIN 140 (279)
T ss_pred CchhhhcccCCCcEEEEcCCccccC
Confidence 999986543 799999999999754
No 41
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=99.37 E-value=8.6e-12 Score=122.00 Aligned_cols=117 Identities=14% Similarity=0.210 Sum_probs=83.8
Q ss_pred HHHHHHcCCCCCCEEEEEcCcccHHHHHHHHcC--CeEEEEeCCHHHHHHHHHHhhcCCCCCCeEEEEccccCCCCCCCc
Q 018261 46 ESIVQKAGIKSTDVILEIGPGTGNLTKKLLEAG--KMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTDLPYFD 123 (359)
Q Consensus 46 ~~iv~~~~~~~~~~VLDIGcGtG~lt~~La~~~--~~V~avDid~~~i~~a~~~~~~~~~~~~v~~i~~D~~~~~l~~fD 123 (359)
+.+++.+......+|||+|||+|.++..+++.. .+|+++|+|+.|++.+++++..+++ ..+++.+|+.......||
T Consensus 186 ~lLl~~l~~~~~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n~l--~~~~~~~D~~~~~~~~fD 263 (342)
T PRK09489 186 QLLLSTLTPHTKGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAANGL--EGEVFASNVFSDIKGRFD 263 (342)
T ss_pred HHHHHhccccCCCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC--CCEEEEcccccccCCCcc
Confidence 444555554456689999999999999999873 5899999999999999999988765 457788888764334799
Q ss_pred ccccccccccchHHHHHHHhcCchhhHHHHHHHHHHHHHHhccCCCeeEEeec
Q 018261 124 ICVANIPYQISSPLTFKLLFHQPAFRCAIIMFQKEFAMRLVAQPGDKLYCRLS 176 (359)
Q Consensus 124 ~VvsNlPy~i~s~ii~~ll~~~~~~~~~~~~~qkE~a~Rlv~kpGg~~y~~ls 176 (359)
+||+|+|||..-...... ....+ ++.. + .++|||.++....
T Consensus 264 lIvsNPPFH~g~~~~~~~------~~~~i----~~a~-~-~LkpgG~L~iVan 304 (342)
T PRK09489 264 MIISNPPFHDGIQTSLDA------AQTLI----RGAV-R-HLNSGGELRIVAN 304 (342)
T ss_pred EEEECCCccCCccccHHH------HHHHH----HHHH-H-hcCcCCEEEEEEe
Confidence 999999998531111000 01111 3333 3 7899999876543
No 42
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.37 E-value=1.3e-11 Score=113.05 Aligned_cols=95 Identities=20% Similarity=0.257 Sum_probs=81.3
Q ss_pred CCCcccccCHHHHHHHHHHcCCCCCCEEEEEcCcccHHHHHHHHcC---CeEEEEeCCHHHHHHHHHHhhcCCCCCCeEE
Q 018261 33 SKGQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEAG---KMVIAVELDSRMVLELQRRFQSTPYSNRLKV 109 (359)
Q Consensus 33 ~~GQ~fl~d~~v~~~iv~~~~~~~~~~VLDIGcGtG~lt~~La~~~---~~V~avDid~~~i~~a~~~~~~~~~~~~v~~ 109 (359)
..||+ +..|.+...+++.+.+.++++|||||||+|++|..|++.. .+|+++|+++.+++.+++++...++ .++++
T Consensus 54 ~~g~~-~~~p~~~~~~~~~l~~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~-~~v~~ 131 (212)
T PRK13942 54 GYGQT-ISAIHMVAIMCELLDLKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGY-DNVEV 131 (212)
T ss_pred CCCCE-eCcHHHHHHHHHHcCCCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCC-CCeEE
Confidence 45665 5789999999999999999999999999999999988763 6999999999999999999987665 37999
Q ss_pred EEccccCCCC--CCCccccccc
Q 018261 110 IQGDVLKTDL--PYFDICVANI 129 (359)
Q Consensus 110 i~~D~~~~~l--~~fD~VvsNl 129 (359)
+++|+..... ..||+|+++.
T Consensus 132 ~~gd~~~~~~~~~~fD~I~~~~ 153 (212)
T PRK13942 132 IVGDGTLGYEENAPYDRIYVTA 153 (212)
T ss_pred EECCcccCCCcCCCcCEEEECC
Confidence 9999876432 3799988764
No 43
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=99.35 E-value=3.6e-11 Score=110.53 Aligned_cols=119 Identities=23% Similarity=0.372 Sum_probs=90.6
Q ss_pred CCCcccccCHHHHHHHHHHcCCCCCCEEEEEcCcccHHHHHHHHc--C------CeEEEEeCCHHHHHHHHHHhhcCCCC
Q 018261 33 SKGQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEA--G------KMVIAVELDSRMVLELQRRFQSTPYS 104 (359)
Q Consensus 33 ~~GQ~fl~d~~v~~~iv~~~~~~~~~~VLDIGcGtG~lt~~La~~--~------~~V~avDid~~~i~~a~~~~~~~~~~ 104 (359)
++|+|-+ |-+..+..+++.++.++||++||||.++..+++. . .+|+.+||+|.|+..++++....++.
T Consensus 81 SlGiHRl----WKd~~v~~L~p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~ 156 (296)
T KOG1540|consen 81 SLGIHRL----WKDMFVSKLGPGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLK 156 (296)
T ss_pred hcchhHH----HHHHhhhccCCCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCC
Confidence 4555533 3455677888889999999999999999999886 2 68999999999999999988655543
Q ss_pred C--CeEEEEccccCCCCC--CCcccccccccccchHHHHHHHhcCchhhHHHHHHHHHHHHHHhccCCCeeE
Q 018261 105 N--RLKVIQGDVLKTDLP--YFDICVANIPYQISSPLTFKLLFHQPAFRCAIIMFQKEFAMRLVAQPGDKLY 172 (359)
Q Consensus 105 ~--~v~~i~~D~~~~~l~--~fD~VvsNlPy~i~s~ii~~ll~~~~~~~~~~~~~qkE~a~Rlv~kpGg~~y 172 (359)
. ++.++++|+++++++ +||..+... -++...++..++ +|.. | |+||||.++
T Consensus 157 ~~~~~~w~~~dAE~LpFdd~s~D~yTiaf-----------GIRN~th~~k~l----~EAY-R-VLKpGGrf~ 211 (296)
T KOG1540|consen 157 ASSRVEWVEGDAEDLPFDDDSFDAYTIAF-----------GIRNVTHIQKAL----REAY-R-VLKPGGRFS 211 (296)
T ss_pred cCCceEEEeCCcccCCCCCCcceeEEEec-----------ceecCCCHHHHH----HHHH-H-hcCCCcEEE
Confidence 3 499999999999987 688765532 233444555555 5665 3 999999766
No 44
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.35 E-value=8e-12 Score=117.93 Aligned_cols=126 Identities=21% Similarity=0.320 Sum_probs=97.5
Q ss_pred ccccCCCcccccCH---------HHHHHHHHHcCCCCCCEEEEEcCcccHHHHHHHHc-CCeEEEEeCCHHHHHHHHHHh
Q 018261 29 SFHKSKGQHILKNP---------LLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEA-GKMVIAVELDSRMVLELQRRF 98 (359)
Q Consensus 29 ~~~k~~GQ~fl~d~---------~v~~~iv~~~~~~~~~~VLDIGcGtG~lt~~La~~-~~~V~avDid~~~i~~a~~~~ 98 (359)
.+.+.+...|..++ .-++.+++.+.+.+|.+|||||||.|.+++.+|+. +.+|+|+++|+++...+++++
T Consensus 36 d~~~~Yscayf~~~~~tL~eAQ~~k~~~~~~kl~L~~G~~lLDiGCGWG~l~~~aA~~y~v~V~GvTlS~~Q~~~~~~r~ 115 (283)
T COG2230 36 DPSMTYSCAYFEDPDMTLEEAQRAKLDLILEKLGLKPGMTLLDIGCGWGGLAIYAAEEYGVTVVGVTLSEEQLAYAEKRI 115 (283)
T ss_pred CCCCceeeEEeCCCCCChHHHHHHHHHHHHHhcCCCCCCEEEEeCCChhHHHHHHHHHcCCEEEEeeCCHHHHHHHHHHH
Confidence 34444455555444 34678889999999999999999999999999988 799999999999999999999
Q ss_pred hcCCCCCCeEEEEccccCCCCCCCcccccccccccchHHHHHHHhcCch--hhHHHHHHHHHHHHHHhccCCCeeE
Q 018261 99 QSTPYSNRLKVIQGDVLKTDLPYFDICVANIPYQISSPLTFKLLFHQPA--FRCAIIMFQKEFAMRLVAQPGDKLY 172 (359)
Q Consensus 99 ~~~~~~~~v~~i~~D~~~~~l~~fD~VvsNlPy~i~s~ii~~ll~~~~~--~~~~~~~~qkE~a~Rlv~kpGg~~y 172 (359)
...++..+++++..|..+++.+ ||.||| ..+++|... ....+ +.+.+ +++|||.+.
T Consensus 116 ~~~gl~~~v~v~l~d~rd~~e~-fDrIvS-----------vgmfEhvg~~~~~~ff-----~~~~~-~L~~~G~~l 173 (283)
T COG2230 116 AARGLEDNVEVRLQDYRDFEEP-FDRIVS-----------VGMFEHVGKENYDDFF-----KKVYA-LLKPGGRML 173 (283)
T ss_pred HHcCCCcccEEEeccccccccc-cceeee-----------hhhHHHhCcccHHHHH-----HHHHh-hcCCCceEE
Confidence 9888888999999999987744 999998 345555433 22221 22223 789999863
No 45
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=99.35 E-value=1.3e-11 Score=117.61 Aligned_cols=76 Identities=28% Similarity=0.441 Sum_probs=66.8
Q ss_pred EEEEEcCcccHHHHHHHHcC--CeEEEEeCCHHHHHHHHHHhhcCCCCCCeEEEEccccCCCCCCCcccccccccccch
Q 018261 59 VILEIGPGTGNLTKKLLEAG--KMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTDLPYFDICVANIPYQISS 135 (359)
Q Consensus 59 ~VLDIGcGtG~lt~~La~~~--~~V~avDid~~~i~~a~~~~~~~~~~~~v~~i~~D~~~~~l~~fD~VvsNlPy~i~s 135 (359)
+|||||||||+++..++... .+|+|+|+|+.+++.|++|...+++ .++.++.+|.++--.+.||+||+|+||--.+
T Consensus 113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~l-~~~~~~~~dlf~~~~~~fDlIVsNPPYip~~ 190 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGL-VRVLVVQSDLFEPLRGKFDLIVSNPPYIPAE 190 (280)
T ss_pred cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcCC-ccEEEEeeecccccCCceeEEEeCCCCCCCc
Confidence 79999999999999999885 4999999999999999999999887 5778888887764444899999999997665
No 46
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=99.35 E-value=9.2e-12 Score=123.53 Aligned_cols=79 Identities=19% Similarity=0.339 Sum_probs=67.0
Q ss_pred CCCCEEEEEcCcccHHHHHHHHc--CCeEEEEeCCHHHHHHHHHHhhcCCCCCCeEEEEccccCCCC---CCCccccccc
Q 018261 55 KSTDVILEIGPGTGNLTKKLLEA--GKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTDL---PYFDICVANI 129 (359)
Q Consensus 55 ~~~~~VLDIGcGtG~lt~~La~~--~~~V~avDid~~~i~~a~~~~~~~~~~~~v~~i~~D~~~~~l---~~fD~VvsNl 129 (359)
.++.+|||||||+|.++..+++. +.+|+|+|+|+.|++.|+++...++. +++++++|+.+... ..||+|++|+
T Consensus 250 ~~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~g~--rV~fi~gDl~e~~l~~~~~FDLIVSNP 327 (423)
T PRK14966 250 PENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADLGA--RVEFAHGSWFDTDMPSEGKWDIIVSNP 327 (423)
T ss_pred CCCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC--cEEEEEcchhccccccCCCccEEEECC
Confidence 45679999999999999999865 57999999999999999999877653 79999999976432 2699999999
Q ss_pred ccccch
Q 018261 130 PYQISS 135 (359)
Q Consensus 130 Py~i~s 135 (359)
||.-..
T Consensus 328 PYI~~~ 333 (423)
T PRK14966 328 PYIENG 333 (423)
T ss_pred CCCCcc
Confidence 997554
No 47
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=99.33 E-value=2e-11 Score=113.40 Aligned_cols=104 Identities=12% Similarity=0.166 Sum_probs=79.7
Q ss_pred CCCCEEEEEcCcccHHHHHHHHc----CCeEEEEeCCHHHHHHHHHHhhcCCCCCCeEEEEccccCCCCCCCcccccccc
Q 018261 55 KSTDVILEIGPGTGNLTKKLLEA----GKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTDLPYFDICVANIP 130 (359)
Q Consensus 55 ~~~~~VLDIGcGtG~lt~~La~~----~~~V~avDid~~~i~~a~~~~~~~~~~~~v~~i~~D~~~~~l~~fD~VvsNlP 130 (359)
.++.+|||||||+|.++..+++. +.+|+|+|+|+.|++.|++++...+...+++++++|+.+++++.+|+|+++..
T Consensus 52 ~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~d~v~~~~~ 131 (239)
T TIGR00740 52 TPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIKNASMVILNFT 131 (239)
T ss_pred CCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCCCCCCEEeeecc
Confidence 46789999999999999999874 57899999999999999999876554457999999999988888999998876
Q ss_pred cccchHHHHHHHhcCchhhHHHHHHHHHHHHHHhccCCCeeEE
Q 018261 131 YQISSPLTFKLLFHQPAFRCAIIMFQKEFAMRLVAQPGDKLYC 173 (359)
Q Consensus 131 y~i~s~ii~~ll~~~~~~~~~~~~~qkE~a~Rlv~kpGg~~y~ 173 (359)
+++..+-- ...++ +++.+ +++|||.++.
T Consensus 132 l~~~~~~~---------~~~~l----~~i~~--~LkpgG~l~i 159 (239)
T TIGR00740 132 LQFLPPED---------RIALL----TKIYE--GLNPNGVLVL 159 (239)
T ss_pred hhhCCHHH---------HHHHH----HHHHH--hcCCCeEEEE
Confidence 55432211 11111 34433 7899998764
No 48
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=99.33 E-value=2.7e-11 Score=99.84 Aligned_cols=89 Identities=20% Similarity=0.303 Sum_probs=72.5
Q ss_pred CHHHHHHHHHHcCCCCCCEEEEEcCcccHHHHHHHHc--CCeEEEEeCCHHHHHHHHHHhhcCCCCCCeEEEEccccCC-
Q 018261 41 NPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEA--GKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKT- 117 (359)
Q Consensus 41 d~~v~~~iv~~~~~~~~~~VLDIGcGtG~lt~~La~~--~~~V~avDid~~~i~~a~~~~~~~~~~~~v~~i~~D~~~~- 117 (359)
.+.+...+++.+.+.++.+|||||||+|.++..+++. +.+|+++|+++.+++.+++++...+.. +++++.+|+...
T Consensus 4 ~~~~~~~~~~~~~~~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~~ 82 (124)
T TIGR02469 4 KREVRALTLSKLRLRPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVS-NIVIVEGDAPEAL 82 (124)
T ss_pred hHHHHHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCC-ceEEEeccccccC
Confidence 4556777888888888889999999999999999986 368999999999999999988766543 789999987642
Q ss_pred C--CCCCcccccccc
Q 018261 118 D--LPYFDICVANIP 130 (359)
Q Consensus 118 ~--l~~fD~VvsNlP 130 (359)
. .+.||.|++..+
T Consensus 83 ~~~~~~~D~v~~~~~ 97 (124)
T TIGR02469 83 EDSLPEPDRVFIGGS 97 (124)
T ss_pred hhhcCCCCEEEECCc
Confidence 1 247999987653
No 49
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=99.33 E-value=6.7e-12 Score=115.89 Aligned_cols=100 Identities=23% Similarity=0.293 Sum_probs=78.0
Q ss_pred CCEEEEEcCcccHHHHHHHHcCCeEEEEeCCHHHHHHHHHHhhcCCCC-C----CeEEEEccccCCCCCCCccccccccc
Q 018261 57 TDVILEIGPGTGNLTKKLLEAGKMVIAVELDSRMVLELQRRFQSTPYS-N----RLKVIQGDVLKTDLPYFDICVANIPY 131 (359)
Q Consensus 57 ~~~VLDIGcGtG~lt~~La~~~~~V~avDid~~~i~~a~~~~~~~~~~-~----~v~~i~~D~~~~~l~~fD~VvsNlPy 131 (359)
+..|||+|||+|.|+..|++.|+.|+|||+++.|++.|+++....+.. . ++++.+.|++.+. +.||.|+|
T Consensus 90 g~~ilDvGCGgGLLSepLArlga~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~~-~~fDaVvc---- 164 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARLGAQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGLT-GKFDAVVC---- 164 (282)
T ss_pred CceEEEeccCccccchhhHhhCCeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhcc-cccceeee----
Confidence 467999999999999999999999999999999999999985544422 2 4777888888765 35999998
Q ss_pred ccchHHHHHHHhcCchhhHHHHHHHHHHHHHHhccCCCeeEEe
Q 018261 132 QISSPLTFKLLFHQPAFRCAIIMFQKEFAMRLVAQPGDKLYCR 174 (359)
Q Consensus 132 ~i~s~ii~~ll~~~~~~~~~~~~~qkE~a~Rlv~kpGg~~y~~ 174 (359)
..+++|..+++..+ .-... +++|||.+|.+
T Consensus 165 -------sevleHV~dp~~~l----~~l~~--~lkP~G~lfit 194 (282)
T KOG1270|consen 165 -------SEVLEHVKDPQEFL----NCLSA--LLKPNGRLFIT 194 (282)
T ss_pred -------HHHHHHHhCHHHHH----HHHHH--HhCCCCceEee
Confidence 56778876665544 22222 67999988765
No 50
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=99.33 E-value=1.2e-11 Score=115.86 Aligned_cols=110 Identities=16% Similarity=0.290 Sum_probs=85.4
Q ss_pred HHHHHHHHHcCCCCCCEEEEEcCcccHHHHHHHHc--CCeEEEEeCCHHHHHHHHHHhhcCCCCCCeEEEEccccCCCC-
Q 018261 43 LLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEA--GKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTDL- 119 (359)
Q Consensus 43 ~v~~~iv~~~~~~~~~~VLDIGcGtG~lt~~La~~--~~~V~avDid~~~i~~a~~~~~~~~~~~~v~~i~~D~~~~~l- 119 (359)
.....++..+.+.++.+|||||||+|.++..|++. +.+|+|+|+|+.|+..|+++.. ++.++.+|+.++..
T Consensus 18 ~~~~~ll~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~~------~~~~~~~d~~~~~~~ 91 (258)
T PRK01683 18 RPARDLLARVPLENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRLP------DCQFVEADIASWQPP 91 (258)
T ss_pred cHHHHHHhhCCCcCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhCC------CCeEEECchhccCCC
Confidence 35667777888888899999999999999999976 5799999999999999998752 68899999976543
Q ss_pred CCCcccccccccccchHHHHHHHhcCchhhHHHHHHHHHHHHHHhccCCCeeEEee
Q 018261 120 PYFDICVANIPYQISSPLTFKLLFHQPAFRCAIIMFQKEFAMRLVAQPGDKLYCRL 175 (359)
Q Consensus 120 ~~fD~VvsNlPy~i~s~ii~~ll~~~~~~~~~~~~~qkE~a~Rlv~kpGg~~y~~l 175 (359)
..||+|++|..+++..+. ..++ +++.+ +++|||.+....
T Consensus 92 ~~fD~v~~~~~l~~~~d~-----------~~~l----~~~~~--~LkpgG~~~~~~ 130 (258)
T PRK01683 92 QALDLIFANASLQWLPDH-----------LELF----PRLVS--LLAPGGVLAVQM 130 (258)
T ss_pred CCccEEEEccChhhCCCH-----------HHHH----HHHHH--hcCCCcEEEEEC
Confidence 379999999877665332 1111 34433 789999887654
No 51
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=99.33 E-value=4e-11 Score=107.24 Aligned_cols=92 Identities=13% Similarity=0.125 Sum_probs=75.5
Q ss_pred cccCHHHHHHHHHHcCCCCCCEEEEEcCcccHHHHHHHHcC--CeEEEEeCCHHHHHHHHHHhhcCCCCCCeEEEEcccc
Q 018261 38 ILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEAG--KMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVL 115 (359)
Q Consensus 38 fl~d~~v~~~iv~~~~~~~~~~VLDIGcGtG~lt~~La~~~--~~V~avDid~~~i~~a~~~~~~~~~~~~v~~i~~D~~ 115 (359)
-++.+.+...++..+.+.++.+|||||||+|.++..+++.. .+|+++|+++.+++.|+++...+++. +++++++|+.
T Consensus 13 ~~~~~~~r~~~~~~l~~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~~-~i~~~~~d~~ 91 (187)
T PRK08287 13 PMTKEEVRALALSKLELHRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGCG-NIDIIPGEAP 91 (187)
T ss_pred CCchHHHHHHHHHhcCCCCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCC-CeEEEecCch
Confidence 35667777778888888889999999999999999998863 68999999999999999988766543 7999999985
Q ss_pred CCCCCCCcccccccc
Q 018261 116 KTDLPYFDICVANIP 130 (359)
Q Consensus 116 ~~~l~~fD~VvsNlP 130 (359)
......||+|+++..
T Consensus 92 ~~~~~~~D~v~~~~~ 106 (187)
T PRK08287 92 IELPGKADAIFIGGS 106 (187)
T ss_pred hhcCcCCCEEEECCC
Confidence 322237999998653
No 52
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.33 E-value=1.4e-11 Score=125.61 Aligned_cols=124 Identities=19% Similarity=0.262 Sum_probs=93.4
Q ss_pred cCCCcccccCHHH--HHHHHHHcCCCCCCEEEEEcCcccHHHHHHHHc-CCeEEEEeCCHHHHHHHHHHhhcCCCCCCeE
Q 018261 32 KSKGQHILKNPLL--VESIVQKAGIKSTDVILEIGPGTGNLTKKLLEA-GKMVIAVELDSRMVLELQRRFQSTPYSNRLK 108 (359)
Q Consensus 32 k~~GQ~fl~d~~v--~~~iv~~~~~~~~~~VLDIGcGtG~lt~~La~~-~~~V~avDid~~~i~~a~~~~~~~~~~~~v~ 108 (359)
.-+|..|..++.+ .+.+++.+.+.++.+|||||||+|.++..|++. +.+|+|+|+|+.|+..|+++..... .+++
T Consensus 240 ~f~g~~~~v~~~v~~te~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvDiS~~~l~~A~~~~~~~~--~~v~ 317 (475)
T PLN02336 240 RVFGEGFVSTGGLETTKEFVDKLDLKPGQKVLDVGCGIGGGDFYMAENFDVHVVGIDLSVNMISFALERAIGRK--CSVE 317 (475)
T ss_pred HHhCCCCCCCchHHHHHHHHHhcCCCCCCEEEEEeccCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHhhcCC--CceE
Confidence 3366677776655 466778887788889999999999999999876 6799999999999999998865432 4799
Q ss_pred EEEccccCCCCC--CCcccccccccccchHHHHHHHhcCchhhHHHHHHHHHHHHHHhccCCCeeEEe
Q 018261 109 VIQGDVLKTDLP--YFDICVANIPYQISSPLTFKLLFHQPAFRCAIIMFQKEFAMRLVAQPGDKLYCR 174 (359)
Q Consensus 109 ~i~~D~~~~~l~--~fD~VvsNlPy~i~s~ii~~ll~~~~~~~~~~~~~qkE~a~Rlv~kpGg~~y~~ 174 (359)
++++|+...+++ .||+|++...++ |.+++..++ +++.+ +++|||.++..
T Consensus 318 ~~~~d~~~~~~~~~~fD~I~s~~~l~-----------h~~d~~~~l----~~~~r--~LkpgG~l~i~ 368 (475)
T PLN02336 318 FEVADCTKKTYPDNSFDVIYSRDTIL-----------HIQDKPALF----RSFFK--WLKPGGKVLIS 368 (475)
T ss_pred EEEcCcccCCCCCCCEEEEEECCccc-----------ccCCHHHHH----HHHHH--HcCCCeEEEEE
Confidence 999999887654 699999965332 223333333 45543 88999998754
No 53
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.31 E-value=3e-11 Score=116.57 Aligned_cols=78 Identities=21% Similarity=0.308 Sum_probs=67.3
Q ss_pred CEEEEEcCcccHHHHHHHHc--CCeEEEEeCCHHHHHHHHHHhhcCCCCCCeEEEEccccCCCC-CCCcccccccccccc
Q 018261 58 DVILEIGPGTGNLTKKLLEA--GKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTDL-PYFDICVANIPYQIS 134 (359)
Q Consensus 58 ~~VLDIGcGtG~lt~~La~~--~~~V~avDid~~~i~~a~~~~~~~~~~~~v~~i~~D~~~~~l-~~fD~VvsNlPy~i~ 134 (359)
.+|||+|||+|.++..++.. ..+|+|+|+|+.+++.|++++..+++..+++++++|+.+... ..||+|++|+||.-.
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~l~~~~fDlIvsNPPyi~~ 214 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFAALPGRRYDLIVSNPPYVDA 214 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhhhCCCCCccEEEECCCCCCc
Confidence 68999999999999999976 479999999999999999999877765679999999876322 379999999999755
Q ss_pred h
Q 018261 135 S 135 (359)
Q Consensus 135 s 135 (359)
.
T Consensus 215 ~ 215 (307)
T PRK11805 215 E 215 (307)
T ss_pred c
Confidence 3
No 54
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=99.30 E-value=4.8e-11 Score=112.01 Aligned_cols=89 Identities=26% Similarity=0.313 Sum_probs=68.9
Q ss_pred HHHHHHHHHcCC-CCCCEEEEEcCcccHHHHHHHHc--CCeEEEEeCCHHHHHHHHHHhhcCCCCCCeEEEEccccCCC-
Q 018261 43 LLVESIVQKAGI-KSTDVILEIGPGTGNLTKKLLEA--GKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTD- 118 (359)
Q Consensus 43 ~v~~~iv~~~~~-~~~~~VLDIGcGtG~lt~~La~~--~~~V~avDid~~~i~~a~~~~~~~~~~~~v~~i~~D~~~~~- 118 (359)
.+++.++..+.. ....+|||+|||+|.++..+++. +.+|+++|+|+.+++.|++|+..++ ++++++|+.+..
T Consensus 72 ~Lv~~~l~~~~~~~~~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~~----~~~~~~D~~~~l~ 147 (251)
T TIGR03704 72 FLVDEAAALARPRSGTLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADAG----GTVHEGDLYDALP 147 (251)
T ss_pred HHHHHHHHhhcccCCCCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC----CEEEEeechhhcc
Confidence 445555554432 23458999999999999999876 4689999999999999999987653 578999987632
Q ss_pred ---CCCCcccccccccccch
Q 018261 119 ---LPYFDICVANIPYQISS 135 (359)
Q Consensus 119 ---l~~fD~VvsNlPy~i~s 135 (359)
...||+|++|+||.-++
T Consensus 148 ~~~~~~fDlVv~NPPy~~~~ 167 (251)
T TIGR03704 148 TALRGRVDILAANAPYVPTD 167 (251)
T ss_pred hhcCCCEeEEEECCCCCCch
Confidence 13699999999997553
No 55
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.30 E-value=5.8e-11 Score=112.11 Aligned_cols=93 Identities=25% Similarity=0.358 Sum_probs=74.4
Q ss_pred HHHHHHHHHHcCCCCCCEEEEEcCcccHHHHHHHHcC--CeEEEEeCCHHHHHHHHHHhhcCCCCCCeEEEEccccCCCC
Q 018261 42 PLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEAG--KMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTDL 119 (359)
Q Consensus 42 ~~v~~~iv~~~~~~~~~~VLDIGcGtG~lt~~La~~~--~~V~avDid~~~i~~a~~~~~~~~~~~~v~~i~~D~~~~~l 119 (359)
..+++.++......++.+|||+|||+|.++..++... .+|+++|+++.+++.|++++. .....++.++++|+.+...
T Consensus 94 e~l~~~~~~~~~~~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~-~~~~~~i~~~~~d~~~~~~ 172 (275)
T PRK09328 94 EELVEWALEALLLKEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAK-HGLGARVEFLQGDWFEPLP 172 (275)
T ss_pred HHHHHHHHHhccccCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHH-hCCCCcEEEEEccccCcCC
Confidence 3555666655556677899999999999999999874 799999999999999999987 2223479999999976332
Q ss_pred -CCCcccccccccccch
Q 018261 120 -PYFDICVANIPYQISS 135 (359)
Q Consensus 120 -~~fD~VvsNlPy~i~s 135 (359)
..||+|++|+||.-.+
T Consensus 173 ~~~fD~Iv~npPy~~~~ 189 (275)
T PRK09328 173 GGRFDLIVSNPPYIPEA 189 (275)
T ss_pred CCceeEEEECCCcCCcc
Confidence 3799999999997543
No 56
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=99.30 E-value=3.2e-11 Score=123.80 Aligned_cols=119 Identities=19% Similarity=0.310 Sum_probs=84.7
Q ss_pred CCEEEEEcCcccHHHHHHHHc--CCeEEEEeCCHHHHHHHHHHhhcCCCCCCeEEEEccccCC-CCCCCccccccccccc
Q 018261 57 TDVILEIGPGTGNLTKKLLEA--GKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKT-DLPYFDICVANIPYQI 133 (359)
Q Consensus 57 ~~~VLDIGcGtG~lt~~La~~--~~~V~avDid~~~i~~a~~~~~~~~~~~~v~~i~~D~~~~-~l~~fD~VvsNlPy~i 133 (359)
+.+|||||||+|.++..++.. +.+|+|+|+|+.+++.|++++..+++..+++++++|+.+. ....||+||+|+||..
T Consensus 139 ~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~~~~~~~fDlIvsNPPYi~ 218 (506)
T PRK01544 139 FLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFENIEKQKFDFIVSNPPYIS 218 (506)
T ss_pred CCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhhhCcCCCccEEEECCCCCC
Confidence 468999999999999999865 5799999999999999999988777666899999998753 2237999999999987
Q ss_pred chHHH---HHHHhcCchhh-----HHHHH---HHHHHHHHHhccCCCeeEEeecc
Q 018261 134 SSPLT---FKLLFHQPAFR-----CAIIM---FQKEFAMRLVAQPGDKLYCRLSV 177 (359)
Q Consensus 134 ~s~ii---~~ll~~~~~~~-----~~~~~---~qkE~a~Rlv~kpGg~~y~~lsv 177 (359)
.+... ...+.+.+... ..+-. +-+++ .+ +++|||.++..++.
T Consensus 219 ~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a-~~-~L~~gG~l~lEig~ 271 (506)
T PRK01544 219 HSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENA-KQ-FLKPNGKIILEIGF 271 (506)
T ss_pred chhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHH-HH-hccCCCEEEEEECC
Confidence 76532 12222222110 01111 11222 22 78999999877653
No 57
>PRK14968 putative methyltransferase; Provisional
Probab=99.30 E-value=6.4e-11 Score=105.07 Aligned_cols=90 Identities=24% Similarity=0.341 Sum_probs=72.9
Q ss_pred HHHHHcCCCCCCEEEEEcCcccHHHHHHHHcCCeEEEEeCCHHHHHHHHHHhhcCCCCCC-eEEEEccccCCCCC-CCcc
Q 018261 47 SIVQKAGIKSTDVILEIGPGTGNLTKKLLEAGKMVIAVELDSRMVLELQRRFQSTPYSNR-LKVIQGDVLKTDLP-YFDI 124 (359)
Q Consensus 47 ~iv~~~~~~~~~~VLDIGcGtG~lt~~La~~~~~V~avDid~~~i~~a~~~~~~~~~~~~-v~~i~~D~~~~~l~-~fD~ 124 (359)
.+++.+...++.+|||+|||+|.++..+++.+.+|+++|+|+.++..+++++..+++..+ +.++++|+.+...+ .||+
T Consensus 14 ~l~~~~~~~~~~~vLd~G~G~G~~~~~l~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~d~ 93 (188)
T PRK14968 14 LLAENAVDKKGDRVLEVGTGSGIVAIVAAKNGKKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEPFRGDKFDV 93 (188)
T ss_pred HHHHhhhccCCCEEEEEccccCHHHHHHHhhcceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEeccccccccccCceE
Confidence 344444446788999999999999999998899999999999999999998876654322 88999998764333 6999
Q ss_pred cccccccccchH
Q 018261 125 CVANIPYQISSP 136 (359)
Q Consensus 125 VvsNlPy~i~s~ 136 (359)
|++|+||....+
T Consensus 94 vi~n~p~~~~~~ 105 (188)
T PRK14968 94 ILFNPPYLPTEE 105 (188)
T ss_pred EEECCCcCCCCc
Confidence 999999987544
No 58
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=99.30 E-value=2.9e-11 Score=106.96 Aligned_cols=110 Identities=22% Similarity=0.228 Sum_probs=87.0
Q ss_pred cccCCCcccccCHHHHHHHHHHcC---CCCCCEEEEEcCcccHHHHHHHHcC-CeEEEEeCCHHHHHHHHHHhhcCCCCC
Q 018261 30 FHKSKGQHILKNPLLVESIVQKAG---IKSTDVILEIGPGTGNLTKKLLEAG-KMVIAVELDSRMVLELQRRFQSTPYSN 105 (359)
Q Consensus 30 ~~k~~GQ~fl~d~~v~~~iv~~~~---~~~~~~VLDIGcGtG~lt~~La~~~-~~V~avDid~~~i~~a~~~~~~~~~~~ 105 (359)
++-.+-| +.++..++..|+..+. .-.+.+|+|+|||||.|+...+-.| .+|+|||+|+++++.+++|.... .+
T Consensus 17 p~~~LEQ-Y~Tp~~~Aa~il~~a~~~g~l~g~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~~a~ei~r~N~~~l--~g 93 (198)
T COG2263 17 PKLGLEQ-YRTPAPLAAYILWVAYLRGDLEGKTVLDLGAGTGILAIGAALLGASRVLAVDIDPEALEIARANAEEL--LG 93 (198)
T ss_pred CCcccee-cCCChHHHHHHHHHHHHcCCcCCCEEEEcCCCcCHHHHHHHhcCCcEEEEEecCHHHHHHHHHHHHhh--CC
Confidence 3444544 5688888888877653 3356789999999999999988886 78999999999999999999873 35
Q ss_pred CeEEEEccccCCCCCCCcccccccccccc-----hHHHHHHHh
Q 018261 106 RLKVIQGDVLKTDLPYFDICVANIPYQIS-----SPLTFKLLF 143 (359)
Q Consensus 106 ~v~~i~~D~~~~~l~~fD~VvsNlPy~i~-----s~ii~~ll~ 143 (359)
++.++.+|+.++. ..+|.++.|+||..- .+.+.+.++
T Consensus 94 ~v~f~~~dv~~~~-~~~dtvimNPPFG~~~rhaDr~Fl~~Ale 135 (198)
T COG2263 94 DVEFVVADVSDFR-GKFDTVIMNPPFGSQRRHADRPFLLKALE 135 (198)
T ss_pred ceEEEEcchhhcC-CccceEEECCCCccccccCCHHHHHHHHH
Confidence 8999999999876 368899999999643 344444444
No 59
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=99.29 E-value=3.4e-11 Score=108.13 Aligned_cols=76 Identities=17% Similarity=0.198 Sum_probs=65.2
Q ss_pred CCCCCCEEEEEcCcccHHHHHHHHc--CCeEEEEeCCHHHHHHHHHHhhcCCCCCCeEEEEccccCCCCC-CCccccccc
Q 018261 53 GIKSTDVILEIGPGTGNLTKKLLEA--GKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTDLP-YFDICVANI 129 (359)
Q Consensus 53 ~~~~~~~VLDIGcGtG~lt~~La~~--~~~V~avDid~~~i~~a~~~~~~~~~~~~v~~i~~D~~~~~l~-~fD~VvsNl 129 (359)
.+.++.+|||||||+|.++..++.. +.+|+++|+++.|++.|+++....++. +++++++|+.++... +||+|+++.
T Consensus 42 ~l~~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~-~i~~~~~d~~~~~~~~~fDlV~~~~ 120 (187)
T PRK00107 42 YLPGGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLK-NVTVVHGRAEEFGQEEKFDVVTSRA 120 (187)
T ss_pred hcCCCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCC-CEEEEeccHhhCCCCCCccEEEEcc
Confidence 3445889999999999999998864 589999999999999999999887764 599999999886644 799999874
No 60
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=99.28 E-value=3.3e-11 Score=107.72 Aligned_cols=73 Identities=16% Similarity=0.218 Sum_probs=62.6
Q ss_pred CCCEEEEEcCcccHHHHHHHHc--CCeEEEEeCCHHHHHHHHHHhhcCCCCCCeEEEEccccCCCC-CCCccccccc
Q 018261 56 STDVILEIGPGTGNLTKKLLEA--GKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTDL-PYFDICVANI 129 (359)
Q Consensus 56 ~~~~VLDIGcGtG~lt~~La~~--~~~V~avDid~~~i~~a~~~~~~~~~~~~v~~i~~D~~~~~l-~~fD~VvsNl 129 (359)
++.+|||||||+|.++..++.. ..+|+|||+|+.|++.++++....++. +++++++|+.++.. ..||+|+++.
T Consensus 42 ~~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~~-~i~~i~~d~~~~~~~~~fD~I~s~~ 117 (181)
T TIGR00138 42 DGKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGLN-NVEIVNGRAEDFQHEEQFDVITSRA 117 (181)
T ss_pred CCCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCCC-CeEEEecchhhccccCCccEEEehh
Confidence 4789999999999999998865 368999999999999999988777654 69999999988643 3799999874
No 61
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=99.28 E-value=4.9e-11 Score=113.02 Aligned_cols=131 Identities=15% Similarity=0.264 Sum_probs=94.9
Q ss_pred HHHHHHcCCCCCCEEEEEcCcccHHHHHHHHcC--CeEEEEeCCHHHHHHHHHHhhcCCCCCCeEEEEccccCCCCCCCc
Q 018261 46 ESIVQKAGIKSTDVILEIGPGTGNLTKKLLEAG--KMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTDLPYFD 123 (359)
Q Consensus 46 ~~iv~~~~~~~~~~VLDIGcGtG~lt~~La~~~--~~V~avDid~~~i~~a~~~~~~~~~~~~v~~i~~D~~~~~l~~fD 123 (359)
+.+++.+....+.+|||+|||.|.++..|++.. .+|+-+|+|..+++.+++|+..+.+. +..++..|..+--...||
T Consensus 148 ~lLl~~l~~~~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~~~-~~~v~~s~~~~~v~~kfd 226 (300)
T COG2813 148 RLLLETLPPDLGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANGVE-NTEVWASNLYEPVEGKFD 226 (300)
T ss_pred HHHHHhCCccCCCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcCCC-ccEEEEeccccccccccc
Confidence 556777777767799999999999999999884 69999999999999999999988764 336788887764444899
Q ss_pred ccccccccccchHHHHHHHhcCchhhHHHHHHHHHHHHHHhccCCCeeEEeecchhhhHHhhhhhh
Q 018261 124 ICVANIPYQISSPLTFKLLFHQPAFRCAIIMFQKEFAMRLVAQPGDKLYCRLSVNTQLHARVSHLL 189 (359)
Q Consensus 124 ~VvsNlPy~i~s~ii~~ll~~~~~~~~~~~~~qkE~a~Rlv~kpGg~~y~~lsv~~q~~~~v~~l~ 189 (359)
.||||+|||-.-.....+.. . |+ .+.++ .+++||.++....-...+...++.+|
T Consensus 227 ~IisNPPfh~G~~v~~~~~~-------~--~i-~~A~~--~L~~gGeL~iVan~~l~y~~~L~~~F 280 (300)
T COG2813 227 LIISNPPFHAGKAVVHSLAQ-------E--II-AAAAR--HLKPGGELWIVANRHLPYEKKLKELF 280 (300)
T ss_pred EEEeCCCccCCcchhHHHHH-------H--HH-HHHHH--hhccCCEEEEEEcCCCChHHHHHHhc
Confidence 99999999965444432211 0 11 22222 68999999876543334444444443
No 62
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=99.28 E-value=9.2e-11 Score=109.00 Aligned_cols=92 Identities=22% Similarity=0.330 Sum_probs=74.7
Q ss_pred HHHHHHHHHHcCCCCCCEEEEEcCcccHHHHHHHHc--CCeEEEEeCCHHHHHHHHHHhhcCCCCCCeEEEEccccCCC-
Q 018261 42 PLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEA--GKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTD- 118 (359)
Q Consensus 42 ~~v~~~iv~~~~~~~~~~VLDIGcGtG~lt~~La~~--~~~V~avDid~~~i~~a~~~~~~~~~~~~v~~i~~D~~~~~- 118 (359)
..++..+++.+. ..+.+|||+|||+|.++..+++. ..+|+++|+++.+++.+++++...++. +++++++|+.+..
T Consensus 74 ~~l~~~~l~~~~-~~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~-~~~~~~~d~~~~~~ 151 (251)
T TIGR03534 74 EELVEAALERLK-KGPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGLD-NVTFLQSDWFEPLP 151 (251)
T ss_pred HHHHHHHHHhcc-cCCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCC-eEEEEECchhccCc
Confidence 345566666654 34568999999999999999986 469999999999999999998776654 7999999997632
Q ss_pred CCCCcccccccccccch
Q 018261 119 LPYFDICVANIPYQISS 135 (359)
Q Consensus 119 l~~fD~VvsNlPy~i~s 135 (359)
...||+|++|+||...+
T Consensus 152 ~~~fD~Vi~npPy~~~~ 168 (251)
T TIGR03534 152 GGKFDLIVSNPPYIPEA 168 (251)
T ss_pred CCceeEEEECCCCCchh
Confidence 34799999999998654
No 63
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=99.27 E-value=7.6e-11 Score=107.53 Aligned_cols=92 Identities=25% Similarity=0.338 Sum_probs=79.2
Q ss_pred cccCHHHHHHHHHHcCCCCCCEEEEEcCcccHHHHHHHHcCCeEEEEeCCHHHHHHHHHHhhcCCCCCCeEEEEccccCC
Q 018261 38 ILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEAGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKT 117 (359)
Q Consensus 38 fl~d~~v~~~iv~~~~~~~~~~VLDIGcGtG~lt~~La~~~~~V~avDid~~~i~~a~~~~~~~~~~~~v~~i~~D~~~~ 117 (359)
.+..+.+...+++.+.+.++.+|||||||+|.++..|++...+|+++|+++.+++.+++++...++. +++++++|+.+.
T Consensus 60 ~~~~p~~~~~l~~~l~~~~~~~VLeiG~GsG~~t~~la~~~~~v~~vd~~~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~ 138 (212)
T PRK00312 60 TISQPYMVARMTELLELKPGDRVLEIGTGSGYQAAVLAHLVRRVFSVERIKTLQWEAKRRLKQLGLH-NVSVRHGDGWKG 138 (212)
T ss_pred eeCcHHHHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHHhCEEEEEeCCHHHHHHHHHHHHHCCCC-ceEEEECCcccC
Confidence 4678999999999999999999999999999999988887779999999999999999998876653 699999998663
Q ss_pred C--CCCCcccccccc
Q 018261 118 D--LPYFDICVANIP 130 (359)
Q Consensus 118 ~--l~~fD~VvsNlP 130 (359)
. ...||+|+++.+
T Consensus 139 ~~~~~~fD~I~~~~~ 153 (212)
T PRK00312 139 WPAYAPFDRILVTAA 153 (212)
T ss_pred CCcCCCcCEEEEccC
Confidence 2 247999988754
No 64
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=99.27 E-value=1.3e-10 Score=102.99 Aligned_cols=90 Identities=26% Similarity=0.327 Sum_probs=79.8
Q ss_pred ccCHHHHHHHHHHcCCCCCCEEEEEcCcccHHHHHHHHc--CCeEEEEeCCHHHHHHHHHHhhcCCCCCCeEEEEccccC
Q 018261 39 LKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEA--GKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLK 116 (359)
Q Consensus 39 l~d~~v~~~iv~~~~~~~~~~VLDIGcGtG~lt~~La~~--~~~V~avDid~~~i~~a~~~~~~~~~~~~v~~i~~D~~~ 116 (359)
++.+.+..-.+.++.+.++++++|||||||.+|..++.. ..+|+|+|-++++++..++|++..++ +|++++.+|+-+
T Consensus 17 ~TK~EIRal~ls~L~~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~-~n~~vv~g~Ap~ 95 (187)
T COG2242 17 MTKEEIRALTLSKLRPRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGV-DNLEVVEGDAPE 95 (187)
T ss_pred CcHHHHHHHHHHhhCCCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCC-CcEEEEeccchH
Confidence 677889999999999999999999999999999999944 58999999999999999999999885 599999999987
Q ss_pred C--CCCCCccccccc
Q 018261 117 T--DLPYFDICVANI 129 (359)
Q Consensus 117 ~--~l~~fD~VvsNl 129 (359)
. +++.||.|+.+-
T Consensus 96 ~L~~~~~~daiFIGG 110 (187)
T COG2242 96 ALPDLPSPDAIFIGG 110 (187)
T ss_pred hhcCCCCCCEEEECC
Confidence 5 344799888754
No 65
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=99.26 E-value=5.5e-11 Score=120.36 Aligned_cols=108 Identities=19% Similarity=0.183 Sum_probs=84.7
Q ss_pred ccccccCCCcccccCHH----HHHHHHHHcCCCCCCEEEEEcCcccHHHHHHHHcCCeEEEEeCCHHHHHHHHHHhhcCC
Q 018261 27 GISFHKSKGQHILKNPL----LVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEAGKMVIAVELDSRMVLELQRRFQSTP 102 (359)
Q Consensus 27 ~~~~~k~~GQ~fl~d~~----v~~~iv~~~~~~~~~~VLDIGcGtG~lt~~La~~~~~V~avDid~~~i~~a~~~~~~~~ 102 (359)
++.++-+.+-.|-.++. +++.+++.+.+.++.+|||+|||+|.++..|++.+.+|+|+|+|+.|++.|++++..++
T Consensus 264 g~~f~~~~~~F~q~n~~~~e~l~~~vl~~l~~~~~~~VLDlgcGtG~~sl~la~~~~~V~gvD~s~~al~~A~~n~~~~~ 343 (443)
T PRK13168 264 GLRLAFSPRDFIQVNAQVNQKMVARALEWLDPQPGDRVLDLFCGLGNFTLPLARQAAEVVGVEGVEAMVERARENARRNG 343 (443)
T ss_pred CeEEEECCCCeEEcCHHHHHHHHHHHHHHhcCCCCCEEEEEeccCCHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcC
Confidence 44455445544556654 44555666677788999999999999999999988999999999999999999988776
Q ss_pred CCCCeEEEEccccCCC----C--CCCcccccccccccch
Q 018261 103 YSNRLKVIQGDVLKTD----L--PYFDICVANIPYQISS 135 (359)
Q Consensus 103 ~~~~v~~i~~D~~~~~----l--~~fD~VvsNlPy~i~s 135 (359)
+. +++++++|+.+.. + ..||+|++|+||.-..
T Consensus 344 ~~-~v~~~~~d~~~~l~~~~~~~~~fD~Vi~dPPr~g~~ 381 (443)
T PRK13168 344 LD-NVTFYHANLEEDFTDQPWALGGFDKVLLDPPRAGAA 381 (443)
T ss_pred CC-ceEEEEeChHHhhhhhhhhcCCCCEEEECcCCcChH
Confidence 53 7999999987531 2 3699999999997543
No 66
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=99.26 E-value=1.2e-10 Score=105.37 Aligned_cols=91 Identities=22% Similarity=0.258 Sum_probs=75.5
Q ss_pred ccCHHHHHHHHHHcCCCCCCEEEEEcCcccHHHHHHHHc---CCeEEEEeCCHHHHHHHHHHhhcCCCCCCeEEEEcccc
Q 018261 39 LKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEA---GKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVL 115 (359)
Q Consensus 39 l~d~~v~~~iv~~~~~~~~~~VLDIGcGtG~lt~~La~~---~~~V~avDid~~~i~~a~~~~~~~~~~~~v~~i~~D~~ 115 (359)
++.+.+...++..+.+.++.+|||+|||+|.++..+++. +.+|+++|+++.+++.+++++..+++..++.++++|+.
T Consensus 23 ~t~~~~r~~~l~~l~~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~ 102 (198)
T PRK00377 23 MTKEEIRALALSKLRLRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAP 102 (198)
T ss_pred CCHHHHHHHHHHHcCCCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechh
Confidence 555677666678889999999999999999999998864 36899999999999999999887765468999999997
Q ss_pred CC-C-C-CCCccccccc
Q 018261 116 KT-D-L-PYFDICVANI 129 (359)
Q Consensus 116 ~~-~-l-~~fD~VvsNl 129 (359)
+. + . +.||.|+++.
T Consensus 103 ~~l~~~~~~~D~V~~~~ 119 (198)
T PRK00377 103 EILFTINEKFDRIFIGG 119 (198)
T ss_pred hhHhhcCCCCCEEEECC
Confidence 63 1 2 4699998864
No 67
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.26 E-value=4.9e-11 Score=107.77 Aligned_cols=95 Identities=24% Similarity=0.355 Sum_probs=83.4
Q ss_pred CCCcccccCHHHHHHHHHHcCCCCCCEEEEEcCcccHHHHHHHHcCCeEEEEeCCHHHHHHHHHHhhcCCCCCCeEEEEc
Q 018261 33 SKGQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEAGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQG 112 (359)
Q Consensus 33 ~~GQ~fl~d~~v~~~iv~~~~~~~~~~VLDIGcGtG~lt~~La~~~~~V~avDid~~~i~~a~~~~~~~~~~~~v~~i~~ 112 (359)
..||. +..|.++.+|++.+.+.++++|||||||+|+.+..|++.+.+|++||+++.+.+.|++++...++. |+.++++
T Consensus 50 ~~gqt-is~P~~vA~m~~~L~~~~g~~VLEIGtGsGY~aAvla~l~~~V~siEr~~~L~~~A~~~L~~lg~~-nV~v~~g 127 (209)
T COG2518 50 GCGQT-ISAPHMVARMLQLLELKPGDRVLEIGTGSGYQAAVLARLVGRVVSIERIEELAEQARRNLETLGYE-NVTVRHG 127 (209)
T ss_pred CCCce-ecCcHHHHHHHHHhCCCCCCeEEEECCCchHHHHHHHHHhCeEEEEEEcHHHHHHHHHHHHHcCCC-ceEEEEC
Confidence 36654 577999999999999999999999999999999999999889999999999999999999988875 6999999
Q ss_pred cccCC-C-CCCCccccccc
Q 018261 113 DVLKT-D-LPYFDICVANI 129 (359)
Q Consensus 113 D~~~~-~-l~~fD~VvsNl 129 (359)
|...- + ...||.|+.+.
T Consensus 128 DG~~G~~~~aPyD~I~Vta 146 (209)
T COG2518 128 DGSKGWPEEAPYDRIIVTA 146 (209)
T ss_pred CcccCCCCCCCcCEEEEee
Confidence 99873 2 24799877654
No 68
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=99.25 E-value=1e-11 Score=99.85 Aligned_cols=81 Identities=27% Similarity=0.413 Sum_probs=61.2
Q ss_pred EEEEcCcccHHHHHHHHcC-----CeEEEEeCCHHHHHHHHHHhhcCCCCCCeEEEEccccCCCC--CCCccccc-cc-c
Q 018261 60 ILEIGPGTGNLTKKLLEAG-----KMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTDL--PYFDICVA-NI-P 130 (359)
Q Consensus 60 VLDIGcGtG~lt~~La~~~-----~~V~avDid~~~i~~a~~~~~~~~~~~~v~~i~~D~~~~~l--~~fD~Vvs-Nl-P 130 (359)
|||+|||+|..+..+++.. .+++++|+|+.|+..++++....+. +++++++|+.+++. +.||+|++ .. .
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~--~~~~~~~D~~~l~~~~~~~D~v~~~~~~~ 78 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGP--KVRFVQADARDLPFSDGKFDLVVCSGLSL 78 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTT--TSEEEESCTTCHHHHSSSEEEEEE-TTGG
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCC--ceEEEECCHhHCcccCCCeeEEEEcCCcc
Confidence 7999999999999999874 7999999999999999999876443 79999999988663 37999998 34 2
Q ss_pred cccchHHHHHHH
Q 018261 131 YQISSPLTFKLL 142 (359)
Q Consensus 131 y~i~s~ii~~ll 142 (359)
.+++.+.+..++
T Consensus 79 ~~~~~~~~~~ll 90 (101)
T PF13649_consen 79 HHLSPEELEALL 90 (101)
T ss_dssp GGSSHHHHHHHH
T ss_pred CCCCHHHHHHHH
Confidence 334444444443
No 69
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=99.25 E-value=6e-11 Score=113.43 Aligned_cols=82 Identities=16% Similarity=0.214 Sum_probs=67.5
Q ss_pred HHHcCCCCCCEEEEEcCcccHHHHHHHHcCCeEEEEeCCHHHHHHHHHHhhcCCCCCCeEEEEccccCCCCC-CCccccc
Q 018261 49 VQKAGIKSTDVILEIGPGTGNLTKKLLEAGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTDLP-YFDICVA 127 (359)
Q Consensus 49 v~~~~~~~~~~VLDIGcGtG~lt~~La~~~~~V~avDid~~~i~~a~~~~~~~~~~~~v~~i~~D~~~~~l~-~fD~Vvs 127 (359)
+..+...++.+|||||||+|.++..|++.+.+|+|+|+|+.+++.++++....++ ++++...|+....++ .||+|++
T Consensus 113 ~~~~~~~~~~~vLDlGcG~G~~~~~la~~g~~V~avD~s~~ai~~~~~~~~~~~l--~v~~~~~D~~~~~~~~~fD~I~~ 190 (287)
T PRK12335 113 LEAVQTVKPGKALDLGCGQGRNSLYLALLGFDVTAVDINQQSLENLQEIAEKENL--NIRTGLYDINSASIQEEYDFILS 190 (287)
T ss_pred HHHhhccCCCCEEEeCCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCC--ceEEEEechhcccccCCccEEEE
Confidence 3333334556999999999999999999999999999999999999998877665 688889998765544 7999999
Q ss_pred ccccc
Q 018261 128 NIPYQ 132 (359)
Q Consensus 128 NlPy~ 132 (359)
+..++
T Consensus 191 ~~vl~ 195 (287)
T PRK12335 191 TVVLM 195 (287)
T ss_pred cchhh
Confidence 87544
No 70
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=99.25 E-value=4.9e-11 Score=115.52 Aligned_cols=107 Identities=9% Similarity=0.098 Sum_probs=84.5
Q ss_pred cccccCCCcccccCHHHHHHHHH----HcCCCCCCEEEEEcCcccHHHHHHHHcCCeEEEEeCCHHHHHHHHHHhhcCCC
Q 018261 28 ISFHKSKGQHILKNPLLVESIVQ----KAGIKSTDVILEIGPGTGNLTKKLLEAGKMVIAVELDSRMVLELQRRFQSTPY 103 (359)
Q Consensus 28 ~~~~k~~GQ~fl~d~~v~~~iv~----~~~~~~~~~VLDIGcGtG~lt~~La~~~~~V~avDid~~~i~~a~~~~~~~~~ 103 (359)
..+.-+.+-.|-.++.+.+.+++ .+...++.+|||+|||+|.++..|++.+.+|+|+|+++.+++.|+++...+++
T Consensus 141 ~~~~~~~~sF~Q~n~~~~~~l~~~v~~~l~~~~~~~VLDl~cG~G~~sl~la~~~~~V~gvD~s~~av~~A~~n~~~~~l 220 (315)
T PRK03522 141 VPLFIRPQSFFQTNPAVAAQLYATARDWVRELPPRSMWDLFCGVGGFGLHCATPGMQLTGIEISAEAIACAKQSAAELGL 220 (315)
T ss_pred EEEEECCCeeeecCHHHHHHHHHHHHHHHHhcCCCEEEEccCCCCHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCC
Confidence 34444455556677776666654 33334568999999999999999999999999999999999999999988776
Q ss_pred CCCeEEEEccccCCCC---CCCcccccccccccch
Q 018261 104 SNRLKVIQGDVLKTDL---PYFDICVANIPYQISS 135 (359)
Q Consensus 104 ~~~v~~i~~D~~~~~l---~~fD~VvsNlPy~i~s 135 (359)
.+++++++|+.++.. ..||+|+.|+|+.-..
T Consensus 221 -~~v~~~~~D~~~~~~~~~~~~D~Vv~dPPr~G~~ 254 (315)
T PRK03522 221 -TNVQFQALDSTQFATAQGEVPDLVLVNPPRRGIG 254 (315)
T ss_pred -CceEEEEcCHHHHHHhcCCCCeEEEECCCCCCcc
Confidence 489999999977532 2699999999976433
No 71
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=99.24 E-value=7.5e-11 Score=114.58 Aligned_cols=112 Identities=16% Similarity=0.258 Sum_probs=78.9
Q ss_pred HHHHHHcCCCCCCEEEEEcCcccHHHHHHHHcC-CeEEEEeCCHHHHHHHHHHhhcCCCCCCeEEEEccccCCCCC-CCc
Q 018261 46 ESIVQKAGIKSTDVILEIGPGTGNLTKKLLEAG-KMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTDLP-YFD 123 (359)
Q Consensus 46 ~~iv~~~~~~~~~~VLDIGcGtG~lt~~La~~~-~~V~avDid~~~i~~a~~~~~~~~~~~~v~~i~~D~~~~~l~-~fD 123 (359)
+.+...+....+.+|||||||+|.++..+++.+ ..|+|+|+|+.|+..++......+...++.++.+|+.+++.+ .||
T Consensus 112 ~~l~~~l~~l~g~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~~~~FD 191 (322)
T PRK15068 112 DRVLPHLSPLKGRTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPALKAFD 191 (322)
T ss_pred HHHHHhhCCCCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCCcCCcC
Confidence 344556665678899999999999999999886 469999999999876544322211123799999999987754 799
Q ss_pred ccccccccccchHHHHHHHhcCchhhHHHHHHHHHHHHHHhccCCCeeEEe
Q 018261 124 ICVANIPYQISSPLTFKLLFHQPAFRCAIIMFQKEFAMRLVAQPGDKLYCR 174 (359)
Q Consensus 124 ~VvsNlPy~i~s~ii~~ll~~~~~~~~~~~~~qkE~a~Rlv~kpGg~~y~~ 174 (359)
+|+|+. ++.|..++...+ +++.+ +++|||.++..
T Consensus 192 ~V~s~~-----------vl~H~~dp~~~L----~~l~~--~LkpGG~lvl~ 225 (322)
T PRK15068 192 TVFSMG-----------VLYHRRSPLDHL----KQLKD--QLVPGGELVLE 225 (322)
T ss_pred EEEECC-----------hhhccCCHHHHH----HHHHH--hcCCCcEEEEE
Confidence 999854 233333333333 45543 78999988654
No 72
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=99.24 E-value=9.1e-11 Score=112.28 Aligned_cols=87 Identities=22% Similarity=0.239 Sum_probs=67.8
Q ss_pred HHHHHHHHHcCCCCCCEEEEEcCcccHHHHHHHHcC-CeEEEEeCCHHHHHHHHHHhhcCCCCCCeEEEEccccCCCCCC
Q 018261 43 LLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEAG-KMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTDLPY 121 (359)
Q Consensus 43 ~v~~~iv~~~~~~~~~~VLDIGcGtG~lt~~La~~~-~~V~avDid~~~i~~a~~~~~~~~~~~~v~~i~~D~~~~~l~~ 121 (359)
.+...+++.. ..++.+|||+|||+|.++..+++.+ .+|+|+|+|+.+++.|++++..+++..++.+..++........
T Consensus 147 ~l~l~~l~~~-~~~g~~VLDvGcGsG~lai~aa~~g~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~~~~~~ 225 (288)
T TIGR00406 147 SLCLEWLEDL-DLKDKNVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQPIEGK 225 (288)
T ss_pred HHHHHHHHhh-cCCCCEEEEeCCChhHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEecccccccCCC
Confidence 3333444444 3467899999999999999998876 5899999999999999999987776556777777754433347
Q ss_pred Ccccccccc
Q 018261 122 FDICVANIP 130 (359)
Q Consensus 122 fD~VvsNlP 130 (359)
||+|++|+.
T Consensus 226 fDlVvan~~ 234 (288)
T TIGR00406 226 ADVIVANIL 234 (288)
T ss_pred ceEEEEecC
Confidence 999999974
No 73
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=99.24 E-value=8.1e-11 Score=113.72 Aligned_cols=120 Identities=13% Similarity=0.134 Sum_probs=83.8
Q ss_pred cccCHHHHH-----HHHHHcCCCCCCEEEEEcCcccHHHHHHHHcC-CeEEEEeCCHHHHHHHHHHhhcCCCCCCeEEEE
Q 018261 38 ILKNPLLVE-----SIVQKAGIKSTDVILEIGPGTGNLTKKLLEAG-KMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQ 111 (359)
Q Consensus 38 fl~d~~v~~-----~iv~~~~~~~~~~VLDIGcGtG~lt~~La~~~-~~V~avDid~~~i~~a~~~~~~~~~~~~v~~i~ 111 (359)
+.++..+.. +++..+...++++|||||||+|.++..++..+ ..|+|||+|+.|+.+++..........++.+..
T Consensus 98 ~~~~~e~~s~~~~~~~l~~l~~~~g~~VLDvGCG~G~~~~~~~~~g~~~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~ 177 (314)
T TIGR00452 98 IKIDSEWRSDIKWDRVLPHLSPLKGRTILDVGCGSGYHMWRMLGHGAKSLVGIDPTVLFLCQFEAVRKLLDNDKRAILEP 177 (314)
T ss_pred ccCCHHHHHHHHHHHHHHhcCCCCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHHhccCCCeEEEE
Confidence 345666654 34555566778999999999999999998886 479999999999876543221111123788899
Q ss_pred ccccCCCC-CCCcccccccccccchHHHHHHHhcCchhhHHHHHHHHHHHHHHhccCCCeeEEe
Q 018261 112 GDVLKTDL-PYFDICVANIPYQISSPLTFKLLFHQPAFRCAIIMFQKEFAMRLVAQPGDKLYCR 174 (359)
Q Consensus 112 ~D~~~~~l-~~fD~VvsNlPy~i~s~ii~~ll~~~~~~~~~~~~~qkE~a~Rlv~kpGg~~y~~ 174 (359)
+++.+++. ..||+|+|+. ++.|.+.+...+ +++.+ +++|||.++..
T Consensus 178 ~~ie~lp~~~~FD~V~s~g-----------vL~H~~dp~~~L----~el~r--~LkpGG~Lvle 224 (314)
T TIGR00452 178 LGIEQLHELYAFDTVFSMG-----------VLYHRKSPLEHL----KQLKH--QLVIKGELVLE 224 (314)
T ss_pred CCHHHCCCCCCcCEEEEcc-----------hhhccCCHHHHH----HHHHH--hcCCCCEEEEE
Confidence 99887764 3899999865 334444443333 45543 89999998754
No 74
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=99.23 E-value=2.3e-10 Score=104.87 Aligned_cols=86 Identities=24% Similarity=0.287 Sum_probs=72.4
Q ss_pred HHHHHHHHHcC--CCCCCEEEEEcCcccHHHHHHHHcCCeEEEEeCCHHHHHHHHHHhhcCCCCCCeEEEEccccCCCCC
Q 018261 43 LLVESIVQKAG--IKSTDVILEIGPGTGNLTKKLLEAGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTDLP 120 (359)
Q Consensus 43 ~v~~~iv~~~~--~~~~~~VLDIGcGtG~lt~~La~~~~~V~avDid~~~i~~a~~~~~~~~~~~~v~~i~~D~~~~~l~ 120 (359)
.+.+.+++.+. ..++.+|||||||+|.++..+++.+.+|+|+|+|+.|+..|++++.......++.+.++|+.+.+ .
T Consensus 40 ~~~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~~~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~-~ 118 (219)
T TIGR02021 40 AMRRKLLDWLPKDPLKGKRVLDAGCGTGLLSIELAKRGAIVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLSLC-G 118 (219)
T ss_pred HHHHHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhhCC-C
Confidence 44556666665 56788999999999999999998888999999999999999999876554457999999998876 7
Q ss_pred CCccccccc
Q 018261 121 YFDICVANI 129 (359)
Q Consensus 121 ~fD~VvsNl 129 (359)
.||+|++..
T Consensus 119 ~fD~ii~~~ 127 (219)
T TIGR02021 119 EFDIVVCMD 127 (219)
T ss_pred CcCEEEEhh
Confidence 899998743
No 75
>PRK05785 hypothetical protein; Provisional
Probab=99.21 E-value=1.3e-10 Score=107.42 Aligned_cols=80 Identities=14% Similarity=0.202 Sum_probs=62.2
Q ss_pred HHHHHHHHHHcC--CCCCCEEEEEcCcccHHHHHHHHc-CCeEEEEeCCHHHHHHHHHHhhcCCCCCCeEEEEccccCCC
Q 018261 42 PLLVESIVQKAG--IKSTDVILEIGPGTGNLTKKLLEA-GKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTD 118 (359)
Q Consensus 42 ~~v~~~iv~~~~--~~~~~~VLDIGcGtG~lt~~La~~-~~~V~avDid~~~i~~a~~~~~~~~~~~~v~~i~~D~~~~~ 118 (359)
..+.+.+++.+. ..++.+|||||||||.++..|++. +.+|+|+|+|+.|++.|+++ ..++++|+++++
T Consensus 35 ~~wr~~~~~~l~~~~~~~~~VLDlGcGtG~~~~~l~~~~~~~v~gvD~S~~Ml~~a~~~---------~~~~~~d~~~lp 105 (226)
T PRK05785 35 VRWRAELVKTILKYCGRPKKVLDVAAGKGELSYHFKKVFKYYVVALDYAENMLKMNLVA---------DDKVVGSFEALP 105 (226)
T ss_pred HHHHHHHHHHHHHhcCCCCeEEEEcCCCCHHHHHHHHhcCCEEEEECCCHHHHHHHHhc---------cceEEechhhCC
Confidence 344444444331 134689999999999999999988 58999999999999999864 135789999887
Q ss_pred CC--CCcccccccc
Q 018261 119 LP--YFDICVANIP 130 (359)
Q Consensus 119 l~--~fD~VvsNlP 130 (359)
++ +||+|+++..
T Consensus 106 ~~d~sfD~v~~~~~ 119 (226)
T PRK05785 106 FRDKSFDVVMSSFA 119 (226)
T ss_pred CCCCCEEEEEecCh
Confidence 65 7999999764
No 76
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=99.21 E-value=1.3e-10 Score=105.44 Aligned_cols=109 Identities=18% Similarity=0.232 Sum_probs=78.1
Q ss_pred CCCEEEEEcCcccHHHHHHHHc--CCeEEEEeCCHHHHHHHHHHhhcCCCCCCeEEEEccc-cCCC--C--CCCcccccc
Q 018261 56 STDVILEIGPGTGNLTKKLLEA--GKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDV-LKTD--L--PYFDICVAN 128 (359)
Q Consensus 56 ~~~~VLDIGcGtG~lt~~La~~--~~~V~avDid~~~i~~a~~~~~~~~~~~~v~~i~~D~-~~~~--l--~~fD~VvsN 128 (359)
++.+|||||||+|.++..+++. ..+|+|||+++.|++.|++++...++ .+++++++|+ ..++ + ..||.|+++
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~-~~v~~~~~d~~~~l~~~~~~~~~D~V~~~ 118 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGL-TNLRLLCGDAVEVLLDMFPDGSLDRIYLN 118 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCC-CCEEEEecCHHHHHHHHcCccccceEEEE
Confidence 5689999999999999999876 46899999999999999998876654 4899999999 5443 3 369999998
Q ss_pred cccccchHHHHHHHhcCch--hhHHHHHHHHHHHHHHhccCCCeeEEeec
Q 018261 129 IPYQISSPLTFKLLFHQPA--FRCAIIMFQKEFAMRLVAQPGDKLYCRLS 176 (359)
Q Consensus 129 lPy~i~s~ii~~ll~~~~~--~~~~~~~~qkE~a~Rlv~kpGg~~y~~ls 176 (359)
.|..|.... .+... ....+ +++.+ +++|||.++....
T Consensus 119 ~~~p~~~~~-----~~~~~~~~~~~l----~~i~~--~LkpgG~l~i~~~ 157 (202)
T PRK00121 119 FPDPWPKKR-----HHKRRLVQPEFL----ALYAR--KLKPGGEIHFATD 157 (202)
T ss_pred CCCCCCCcc-----ccccccCCHHHH----HHHHH--HcCCCCEEEEEcC
Confidence 765443210 00000 01111 34433 7899999986543
No 77
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=99.20 E-value=1.8e-10 Score=114.81 Aligned_cols=109 Identities=14% Similarity=0.153 Sum_probs=82.7
Q ss_pred ccccccccCC----CcccccCHHHHHHHHHHcCCCCCCEEEEEcCcccHHHHHHHHcC-CeEEEEeCCHHHHHHHHHHhh
Q 018261 25 AGGISFHKSK----GQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEAG-KMVIAVELDSRMVLELQRRFQ 99 (359)
Q Consensus 25 ~~~~~~~k~~----GQ~fl~d~~v~~~iv~~~~~~~~~~VLDIGcGtG~lt~~La~~~-~~V~avDid~~~i~~a~~~~~ 99 (359)
..|+++.-.+ -+-|+.|....+..+..+ .++.+|||+|||+|.++..++..+ .+|++||+|+.+++.|++++.
T Consensus 187 E~g~~f~vdl~~g~ktG~flDqr~~R~~~~~~--~~g~rVLDlfsgtG~~~l~aa~~ga~~V~~VD~s~~al~~a~~N~~ 264 (396)
T PRK15128 187 EHGMKLLVDIQGGHKTGYYLDQRDSRLATRRY--VENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVE 264 (396)
T ss_pred ECCEEEEEecccccccCcChhhHHHHHHHHHh--cCCCeEEEeccCCCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHH
Confidence 3455554333 223555666666666554 357899999999999998877654 589999999999999999998
Q ss_pred cCCCC-CCeEEEEccccCCC------CCCCcccccccccccch
Q 018261 100 STPYS-NRLKVIQGDVLKTD------LPYFDICVANIPYQISS 135 (359)
Q Consensus 100 ~~~~~-~~v~~i~~D~~~~~------l~~fD~VvsNlPy~i~s 135 (359)
.+++. .+++++++|+.++- -..||+||+|+||...+
T Consensus 265 ~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDlVilDPP~f~~~ 307 (396)
T PRK15128 265 LNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIVMDPPKFVEN 307 (396)
T ss_pred HcCCCCCcEEEEEccHHHHHHHHHhcCCCCCEEEECCCCCCCC
Confidence 88764 47999999998741 23799999999997654
No 78
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=99.20 E-value=1.3e-10 Score=110.01 Aligned_cols=104 Identities=21% Similarity=0.344 Sum_probs=79.7
Q ss_pred cCCCCCCEEEEEcCcccHHHHHHHHc-C--CeEEEEeCCHHHHHHHHHHhhcCCCCCCeEEEEccccCCCCC--CCcccc
Q 018261 52 AGIKSTDVILEIGPGTGNLTKKLLEA-G--KMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTDLP--YFDICV 126 (359)
Q Consensus 52 ~~~~~~~~VLDIGcGtG~lt~~La~~-~--~~V~avDid~~~i~~a~~~~~~~~~~~~v~~i~~D~~~~~l~--~fD~Vv 126 (359)
+.+.++.+|||||||+|..+..+++. + .+|+++|+++.|++.|+++....++. +++++.+|+.+++++ .||+|+
T Consensus 73 ~~~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~-~v~~~~~d~~~l~~~~~~fD~Vi 151 (272)
T PRK11873 73 AELKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYT-NVEFRLGEIEALPVADNSVDVII 151 (272)
T ss_pred ccCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCC-CEEEEEcchhhCCCCCCceeEEE
Confidence 45678899999999999988877765 3 47999999999999999988766543 899999999887754 799999
Q ss_pred cccccccchHHHHHHHhcCchhhHHHHHHHHHHHHHHhccCCCeeEE
Q 018261 127 ANIPYQISSPLTFKLLFHQPAFRCAIIMFQKEFAMRLVAQPGDKLYC 173 (359)
Q Consensus 127 sNlPy~i~s~ii~~ll~~~~~~~~~~~~~qkE~a~Rlv~kpGg~~y~ 173 (359)
+|..+++..+ ....+ +++. | +++|||.++.
T Consensus 152 ~~~v~~~~~d-----------~~~~l----~~~~-r-~LkpGG~l~i 181 (272)
T PRK11873 152 SNCVINLSPD-----------KERVF----KEAF-R-VLKPGGRFAI 181 (272)
T ss_pred EcCcccCCCC-----------HHHHH----HHHH-H-HcCCCcEEEE
Confidence 9876554322 11222 4443 3 7899998864
No 79
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=99.20 E-value=1.6e-10 Score=104.85 Aligned_cols=91 Identities=13% Similarity=0.188 Sum_probs=72.0
Q ss_pred HHHHHHHHHHcC-CCCCCEEEEEcCcccHHHHHHHHc-CCeEEEEeCCHHHHHHHHHHhhcCCCCCCeEEEEccccCCC-
Q 018261 42 PLLVESIVQKAG-IKSTDVILEIGPGTGNLTKKLLEA-GKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTD- 118 (359)
Q Consensus 42 ~~v~~~iv~~~~-~~~~~~VLDIGcGtG~lt~~La~~-~~~V~avDid~~~i~~a~~~~~~~~~~~~v~~i~~D~~~~~- 118 (359)
..+.+.++..+. ..++.+|||+|||+|.++..++.+ ..+|++||+++.+++.++++++.+++. +++++++|+.+.-
T Consensus 38 d~v~e~l~~~l~~~~~~~~vLDl~~GsG~l~l~~lsr~a~~V~~vE~~~~a~~~a~~Nl~~~~~~-~v~~~~~D~~~~l~ 116 (199)
T PRK10909 38 DRVRETLFNWLAPVIVDARCLDCFAGSGALGLEALSRYAAGATLLEMDRAVAQQLIKNLATLKAG-NARVVNTNALSFLA 116 (199)
T ss_pred HHHHHHHHHHHhhhcCCCEEEEcCCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCCC-cEEEEEchHHHHHh
Confidence 455555666553 246789999999999999865544 579999999999999999999877654 7999999987632
Q ss_pred -C-CCCccccccccccc
Q 018261 119 -L-PYFDICVANIPYQI 133 (359)
Q Consensus 119 -l-~~fD~VvsNlPy~i 133 (359)
. ..||+|++|+||..
T Consensus 117 ~~~~~fDlV~~DPPy~~ 133 (199)
T PRK10909 117 QPGTPHNVVFVDPPFRK 133 (199)
T ss_pred hcCCCceEEEECCCCCC
Confidence 1 25999999999863
No 80
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=99.20 E-value=1.6e-10 Score=109.93 Aligned_cols=95 Identities=23% Similarity=0.268 Sum_probs=68.7
Q ss_pred CCcccccCHHHHHHHHHHcCCCCCCEEEEEcCcccHHHHHHHHcC-CeEEEEeCCHHHHHHHHHHhhcCCCCCCeEEEEc
Q 018261 34 KGQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEAG-KMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQG 112 (359)
Q Consensus 34 ~GQ~fl~d~~v~~~iv~~~~~~~~~~VLDIGcGtG~lt~~La~~~-~~V~avDid~~~i~~a~~~~~~~~~~~~v~~i~~ 112 (359)
+|+-..-.-.+.-+.++.. ..++.+|||+|||+|.|++..++.| .+|+|+|+||.+++.+++|...+++...++.-..
T Consensus 141 FGTG~HpTT~lcL~~Le~~-~~~g~~vlDvGcGSGILaIAa~kLGA~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~ 219 (300)
T COG2264 141 FGTGTHPTTSLCLEALEKL-LKKGKTVLDVGCGSGILAIAAAKLGAKKVVGVDIDPQAVEAARENARLNGVELLVQAKGF 219 (300)
T ss_pred cCCCCChhHHHHHHHHHHh-hcCCCEEEEecCChhHHHHHHHHcCCceEEEecCCHHHHHHHHHHHHHcCCchhhhcccc
Confidence 3443333334444444444 3488999999999999999999997 5699999999999999999998876432334444
Q ss_pred cccCCCC-CCCccccccc
Q 018261 113 DVLKTDL-PYFDICVANI 129 (359)
Q Consensus 113 D~~~~~l-~~fD~VvsNl 129 (359)
+..+... ..||+||+|+
T Consensus 220 ~~~~~~~~~~~DvIVANI 237 (300)
T COG2264 220 LLLEVPENGPFDVIVANI 237 (300)
T ss_pred cchhhcccCcccEEEehh
Confidence 4444333 3799999997
No 81
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=99.20 E-value=1.3e-10 Score=115.09 Aligned_cols=131 Identities=14% Similarity=0.115 Sum_probs=99.4
Q ss_pred ccccccCCCcccccCHHHHHHHHHHc----CCCCCCEEEEEcCcccHHHHHHHHcCCeEEEEeCCHHHHHHHHHHhhcCC
Q 018261 27 GISFHKSKGQHILKNPLLVESIVQKA----GIKSTDVILEIGPGTGNLTKKLLEAGKMVIAVELDSRMVLELQRRFQSTP 102 (359)
Q Consensus 27 ~~~~~k~~GQ~fl~d~~v~~~iv~~~----~~~~~~~VLDIGcGtG~lt~~La~~~~~V~avDid~~~i~~a~~~~~~~~ 102 (359)
+..++-+.+-.|.++..+.+.+++.+ ...++.+|||+|||+|.++..++..+.+|+|||+++.+++.|++++..++
T Consensus 200 g~~~~~~~~~F~Q~n~~~~~~l~~~~~~~l~~~~~~~vLDL~cG~G~~~l~la~~~~~v~~vE~~~~av~~a~~N~~~~~ 279 (374)
T TIGR02085 200 DVPLVIRPQSFFQTNPKVAAQLYATARQWVREIPVTQMWDLFCGVGGFGLHCAGPDTQLTGIEIESEAIACAQQSAQMLG 279 (374)
T ss_pred CEEEEECCCccccCCHHHHHHHHHHHHHHHHhcCCCEEEEccCCccHHHHHHhhcCCeEEEEECCHHHHHHHHHHHHHcC
Confidence 44566666667888888888876543 32356799999999999999999888999999999999999999998877
Q ss_pred CCCCeEEEEccccCCC--C-CCCcccccccccccchHHHHHHHhcCchhhHHHHHHHHHHHHHHhccCCCeeEEeecch
Q 018261 103 YSNRLKVIQGDVLKTD--L-PYFDICVANIPYQISSPLTFKLLFHQPAFRCAIIMFQKEFAMRLVAQPGDKLYCRLSVN 178 (359)
Q Consensus 103 ~~~~v~~i~~D~~~~~--l-~~fD~VvsNlPy~i~s~ii~~ll~~~~~~~~~~~~~qkE~a~Rlv~kpGg~~y~~lsv~ 178 (359)
+. +++++++|+.++. . ..||+||.|+||.-..+.+...+ . .++|++.+|.+....
T Consensus 280 ~~-~~~~~~~d~~~~~~~~~~~~D~vi~DPPr~G~~~~~l~~l-----------------~---~~~p~~ivyvsc~p~ 337 (374)
T TIGR02085 280 LD-NLSFAALDSAKFATAQMSAPELVLVNPPRRGIGKELCDYL-----------------S---QMAPKFILYSSCNAQ 337 (374)
T ss_pred CC-cEEEEECCHHHHHHhcCCCCCEEEECCCCCCCcHHHHHHH-----------------H---hcCCCeEEEEEeCHH
Confidence 64 8999999997643 1 35999999999863332221111 1 257888899887543
No 82
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=99.19 E-value=2.9e-10 Score=107.49 Aligned_cols=85 Identities=14% Similarity=0.129 Sum_probs=72.0
Q ss_pred HHHHcCCCCCCEEEEEcCcccHHHHHHHHc---CCeEEEEeCCHHHHHHHHHHhhcCCCCCCeEEEEccccCCC--CCCC
Q 018261 48 IVQKAGIKSTDVILEIGPGTGNLTKKLLEA---GKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTD--LPYF 122 (359)
Q Consensus 48 iv~~~~~~~~~~VLDIGcGtG~lt~~La~~---~~~V~avDid~~~i~~a~~~~~~~~~~~~v~~i~~D~~~~~--l~~f 122 (359)
.+..+++.++.+|||+|||+|..|..+++. ...|+|+|+++.+++.+++++...++. +++++++|+..+. .+.|
T Consensus 63 ~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~-~v~~~~~D~~~~~~~~~~f 141 (264)
T TIGR00446 63 PPLALEPDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVL-NVAVTNFDGRVFGAAVPKF 141 (264)
T ss_pred HHHHhCCCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCC-cEEEecCCHHHhhhhccCC
Confidence 345667888999999999999999999875 358999999999999999999887764 7999999987654 2369
Q ss_pred ccccccccccc
Q 018261 123 DICVANIPYQI 133 (359)
Q Consensus 123 D~VvsNlPy~i 133 (359)
|.|+.++|+.-
T Consensus 142 D~Vl~D~Pcsg 152 (264)
T TIGR00446 142 DAILLDAPCSG 152 (264)
T ss_pred CEEEEcCCCCC
Confidence 99999999763
No 83
>PRK07402 precorrin-6B methylase; Provisional
Probab=99.18 E-value=5.7e-10 Score=100.58 Aligned_cols=77 Identities=22% Similarity=0.318 Sum_probs=66.4
Q ss_pred ccCHHHHHHHHHHcCCCCCCEEEEEcCcccHHHHHHHHc--CCeEEEEeCCHHHHHHHHHHhhcCCCCCCeEEEEccccC
Q 018261 39 LKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEA--GKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLK 116 (359)
Q Consensus 39 l~d~~v~~~iv~~~~~~~~~~VLDIGcGtG~lt~~La~~--~~~V~avDid~~~i~~a~~~~~~~~~~~~v~~i~~D~~~ 116 (359)
++.+.+...++..+.+.++.+|||+|||+|.++..+++. +.+|+++|+|+.+++.+++++...+. .+++++++|+.+
T Consensus 23 ~t~~~v~~~l~~~l~~~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~-~~v~~~~~d~~~ 101 (196)
T PRK07402 23 LTKREVRLLLISQLRLEPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGV-KNVEVIEGSAPE 101 (196)
T ss_pred CCHHHHHHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCC-CCeEEEECchHH
Confidence 566667777888888888999999999999999999865 47999999999999999999877665 379999999865
No 84
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=99.18 E-value=2.7e-10 Score=104.44 Aligned_cols=100 Identities=15% Similarity=0.197 Sum_probs=76.8
Q ss_pred CEEEEEcCcccHHHHHHHHc--CCeEEEEeCCHHHHHHHHHHhhcCCCCCCeEEEEccccCCCCC-CCcccccccccccc
Q 018261 58 DVILEIGPGTGNLTKKLLEA--GKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTDLP-YFDICVANIPYQIS 134 (359)
Q Consensus 58 ~~VLDIGcGtG~lt~~La~~--~~~V~avDid~~~i~~a~~~~~~~~~~~~v~~i~~D~~~~~l~-~fD~VvsNlPy~i~ 134 (359)
++|||||||+|.++..+++. +.+|+++|+|+.++..+++++...++..+++++.+|+.+.+.+ .||+|+++.
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~~~~~fD~I~~~~----- 75 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDPFPDTYDLVFGFE----- 75 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCCCCCCCCEeehHH-----
Confidence 37999999999999999876 3689999999999999999988776667899999999765443 799998743
Q ss_pred hHHHHHHHhcCchhhHHHHHHHHHHHHHHhccCCCeeEEe
Q 018261 135 SPLTFKLLFHQPAFRCAIIMFQKEFAMRLVAQPGDKLYCR 174 (359)
Q Consensus 135 s~ii~~ll~~~~~~~~~~~~~qkE~a~Rlv~kpGg~~y~~ 174 (359)
+++|...+...+ +++.+ +++|||.++..
T Consensus 76 ------~l~~~~~~~~~l----~~~~~--~LkpgG~l~i~ 103 (224)
T smart00828 76 ------VIHHIKDKMDLF----SNISR--HLKDGGHLVLA 103 (224)
T ss_pred ------HHHhCCCHHHHH----HHHHH--HcCCCCEEEEE
Confidence 444444433333 44433 78999998653
No 85
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=99.18 E-value=7.8e-11 Score=106.02 Aligned_cols=86 Identities=15% Similarity=0.242 Sum_probs=74.5
Q ss_pred HHHHHHHcCCCCCCEEEEEcCcccHHHHHHHHc--CCeEEEEeCCHHHHHHHHHHhhcCCCCCCeEEEEccccCCCCC-C
Q 018261 45 VESIVQKAGIKSTDVILEIGPGTGNLTKKLLEA--GKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTDLP-Y 121 (359)
Q Consensus 45 ~~~iv~~~~~~~~~~VLDIGcGtG~lt~~La~~--~~~V~avDid~~~i~~a~~~~~~~~~~~~v~~i~~D~~~~~l~-~ 121 (359)
+..++....+....+|.|+|||+|+.|..|+++ ++.|+|+|-|+.|++.|++++. +++|..+|+.+...+ .
T Consensus 19 a~dLla~Vp~~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rlp------~~~f~~aDl~~w~p~~~ 92 (257)
T COG4106 19 ARDLLARVPLERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRLP------DATFEEADLRTWKPEQP 92 (257)
T ss_pred HHHHHhhCCccccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhCC------CCceecccHhhcCCCCc
Confidence 345677778888899999999999999999998 7999999999999999988763 788999999987754 7
Q ss_pred CcccccccccccchH
Q 018261 122 FDICVANIPYQISSP 136 (359)
Q Consensus 122 fD~VvsNlPy~i~s~ 136 (359)
+|++++|..++|..+
T Consensus 93 ~dllfaNAvlqWlpd 107 (257)
T COG4106 93 TDLLFANAVLQWLPD 107 (257)
T ss_pred cchhhhhhhhhhccc
Confidence 899999998887653
No 86
>PRK04266 fibrillarin; Provisional
Probab=99.18 E-value=2.9e-10 Score=105.14 Aligned_cols=110 Identities=18% Similarity=0.195 Sum_probs=79.1
Q ss_pred HHHHHHHH---HcCCCCCCEEEEEcCcccHHHHHHHHcC--CeEEEEeCCHHHHHHHHHHhhcCCCCCCeEEEEccccCC
Q 018261 43 LLVESIVQ---KAGIKSTDVILEIGPGTGNLTKKLLEAG--KMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKT 117 (359)
Q Consensus 43 ~v~~~iv~---~~~~~~~~~VLDIGcGtG~lt~~La~~~--~~V~avDid~~~i~~a~~~~~~~~~~~~v~~i~~D~~~~ 117 (359)
.....++. .+.+.++.+|||+|||+|.++..|++.. .+|+|+|+++.|++.+.++..... |+.++.+|+...
T Consensus 56 ~~~~~ll~~~~~l~i~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~~---nv~~i~~D~~~~ 132 (226)
T PRK04266 56 KLAAAILKGLKNFPIKKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEERK---NIIPILADARKP 132 (226)
T ss_pred chHHHHHhhHhhCCCCCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhcC---CcEEEECCCCCc
Confidence 34444443 5788899999999999999999999873 689999999999998877765443 899999998752
Q ss_pred ----CC-CCCcccccccccccchHHHHHHHhcCchhhHHHHHHHHHHHHHHhccCCCeeEEe
Q 018261 118 ----DL-PYFDICVANIPYQISSPLTFKLLFHQPAFRCAIIMFQKEFAMRLVAQPGDKLYCR 174 (359)
Q Consensus 118 ----~l-~~fD~VvsNlPy~i~s~ii~~ll~~~~~~~~~~~~~qkE~a~Rlv~kpGg~~y~~ 174 (359)
++ ..||+|+++++..+.. ..+ -+++. | +++|||.++..
T Consensus 133 ~~~~~l~~~~D~i~~d~~~p~~~--------------~~~---L~~~~-r-~LKpGG~lvI~ 175 (226)
T PRK04266 133 ERYAHVVEKVDVIYQDVAQPNQA--------------EIA---IDNAE-F-FLKDGGYLLLA 175 (226)
T ss_pred chhhhccccCCEEEECCCChhHH--------------HHH---HHHHH-H-hcCCCcEEEEE
Confidence 12 2689999876521110 001 03333 3 78999998764
No 87
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=99.18 E-value=2.2e-10 Score=107.33 Aligned_cols=95 Identities=25% Similarity=0.373 Sum_probs=69.7
Q ss_pred CCCCCEEEEEcCcccHHHHHHHHcCC-eEEEEeCCHHHHHHHHHHhhcCCCCCCeEEEEccccCCCCCCCcccccccccc
Q 018261 54 IKSTDVILEIGPGTGNLTKKLLEAGK-MVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTDLPYFDICVANIPYQ 132 (359)
Q Consensus 54 ~~~~~~VLDIGcGtG~lt~~La~~~~-~V~avDid~~~i~~a~~~~~~~~~~~~v~~i~~D~~~~~l~~fD~VvsNlPy~ 132 (359)
..++.+|||||||+|.++..+++.+. +|+|+|+|+.+++.|++++..+++..++.+..+|. .||+|++|+...
T Consensus 117 ~~~~~~VLDiGcGsG~l~i~~~~~g~~~v~giDis~~~l~~A~~n~~~~~~~~~~~~~~~~~------~fD~Vvani~~~ 190 (250)
T PRK00517 117 VLPGKTVLDVGCGSGILAIAAAKLGAKKVLAVDIDPQAVEAARENAELNGVELNVYLPQGDL------KADVIVANILAN 190 (250)
T ss_pred cCCCCEEEEeCCcHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCCceEEEccCCC------CcCEEEEcCcHH
Confidence 35788999999999999999888765 59999999999999999988776543455544432 699999986421
Q ss_pred cchHHHHHHHhcCchhhHHHHHHHHHHHHHHhccCCCeeEEe
Q 018261 133 ISSPLTFKLLFHQPAFRCAIIMFQKEFAMRLVAQPGDKLYCR 174 (359)
Q Consensus 133 i~s~ii~~ll~~~~~~~~~~~~~qkE~a~Rlv~kpGg~~y~~ 174 (359)
.+..++ +++.+ +++|||.++.+
T Consensus 191 ----~~~~l~--------------~~~~~--~LkpgG~lils 212 (250)
T PRK00517 191 ----PLLELA--------------PDLAR--LLKPGGRLILS 212 (250)
T ss_pred ----HHHHHH--------------HHHHH--hcCCCcEEEEE
Confidence 111111 23332 78999998754
No 88
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=99.18 E-value=6.7e-11 Score=113.18 Aligned_cols=100 Identities=24% Similarity=0.271 Sum_probs=69.8
Q ss_pred cccccCCCcccccCHHHHHHHHHHcCCCCCCEEEEEcCcccHHHHHHHHcC-CeEEEEeCCHHHHHHHHHHhhcCCCCCC
Q 018261 28 ISFHKSKGQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEAG-KMVIAVELDSRMVLELQRRFQSTPYSNR 106 (359)
Q Consensus 28 ~~~~k~~GQ~fl~d~~v~~~iv~~~~~~~~~~VLDIGcGtG~lt~~La~~~-~~V~avDid~~~i~~a~~~~~~~~~~~~ 106 (359)
+.|.-.||.-..-.-.+.-++++.. ..++++|||+|||||.|++..++.| .+|+|+|+||.+++.|++|+..+++..+
T Consensus 134 idPg~AFGTG~H~TT~lcl~~l~~~-~~~g~~vLDvG~GSGILaiaA~klGA~~v~a~DiDp~Av~~a~~N~~~N~~~~~ 212 (295)
T PF06325_consen 134 IDPGMAFGTGHHPTTRLCLELLEKY-VKPGKRVLDVGCGSGILAIAAAKLGAKKVVAIDIDPLAVEAARENAELNGVEDR 212 (295)
T ss_dssp ESTTSSS-SSHCHHHHHHHHHHHHH-SSTTSEEEEES-TTSHHHHHHHHTTBSEEEEEESSCHHHHHHHHHHHHTT-TTC
T ss_pred ECCCCcccCCCCHHHHHHHHHHHHh-ccCCCEEEEeCCcHHHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHHcCCCee
Confidence 3444455544433334444445554 4577899999999999999999997 5799999999999999999999988776
Q ss_pred eEEEEccccCCCCCCCcccccccc
Q 018261 107 LKVIQGDVLKTDLPYFDICVANIP 130 (359)
Q Consensus 107 v~~i~~D~~~~~l~~fD~VvsNlP 130 (359)
+.+. ...+..-..||+|++|+-
T Consensus 213 ~~v~--~~~~~~~~~~dlvvANI~ 234 (295)
T PF06325_consen 213 IEVS--LSEDLVEGKFDLVVANIL 234 (295)
T ss_dssp EEES--CTSCTCCS-EEEEEEES-
T ss_pred EEEE--EecccccccCCEEEECCC
Confidence 6553 222222258999999973
No 89
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=99.17 E-value=3.2e-10 Score=114.33 Aligned_cols=92 Identities=17% Similarity=0.248 Sum_probs=76.3
Q ss_pred cCHHHHHHHHHHcCCCCCCEEEEEcCcccHHHHHHHHcC--CeEEEEeCCHHHHHHHHHHhhcCCCCCCeEEEEccccCC
Q 018261 40 KNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEAG--KMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKT 117 (359)
Q Consensus 40 ~d~~v~~~iv~~~~~~~~~~VLDIGcGtG~lt~~La~~~--~~V~avDid~~~i~~a~~~~~~~~~~~~v~~i~~D~~~~ 117 (359)
........++..+++.++.+|||+|||+|..|..+++.. .+|+|+|+++.++..+++++...++ +++++++|+.+.
T Consensus 228 iQd~~s~~~~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~--~~~~~~~D~~~~ 305 (427)
T PRK10901 228 VQDAAAQLAATLLAPQNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGL--KATVIVGDARDP 305 (427)
T ss_pred EECHHHHHHHHHcCCCCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCC--CeEEEEcCcccc
Confidence 333445556667888899999999999999999999874 5999999999999999999988765 478999999865
Q ss_pred C----CCCCccccccccccc
Q 018261 118 D----LPYFDICVANIPYQI 133 (359)
Q Consensus 118 ~----l~~fD~VvsNlPy~i 133 (359)
. ...||.|++|+|+..
T Consensus 306 ~~~~~~~~fD~Vl~D~Pcs~ 325 (427)
T PRK10901 306 AQWWDGQPFDRILLDAPCSA 325 (427)
T ss_pred hhhcccCCCCEEEECCCCCc
Confidence 3 136999999999864
No 90
>PRK08317 hypothetical protein; Provisional
Probab=99.16 E-value=5.6e-10 Score=102.18 Aligned_cols=112 Identities=20% Similarity=0.291 Sum_probs=83.4
Q ss_pred HHHHHHHHHcCCCCCCEEEEEcCcccHHHHHHHHcC---CeEEEEeCCHHHHHHHHHHhhcCCCCCCeEEEEccccCCCC
Q 018261 43 LLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEAG---KMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTDL 119 (359)
Q Consensus 43 ~v~~~iv~~~~~~~~~~VLDIGcGtG~lt~~La~~~---~~V~avDid~~~i~~a~~~~~~~~~~~~v~~i~~D~~~~~l 119 (359)
.+.+.+++.+.+.++.+|||||||+|.++..+++.. .+|+++|+++.++..++++..... .+++++.+|+...++
T Consensus 6 ~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~--~~~~~~~~d~~~~~~ 83 (241)
T PRK08317 6 RYRARTFELLAVQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGLG--PNVEFVRGDADGLPF 83 (241)
T ss_pred HHHHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCCC--CceEEEecccccCCC
Confidence 345667788888899999999999999999998763 689999999999999998733222 379999999987654
Q ss_pred C--CCcccccccccccchHHHHHHHhcCchhhHHHHHHHHHHHHHHhccCCCeeEE
Q 018261 120 P--YFDICVANIPYQISSPLTFKLLFHQPAFRCAIIMFQKEFAMRLVAQPGDKLYC 173 (359)
Q Consensus 120 ~--~fD~VvsNlPy~i~s~ii~~ll~~~~~~~~~~~~~qkE~a~Rlv~kpGg~~y~ 173 (359)
+ .||+|+++..+ .+...+...+ +++.+ +++|||.+..
T Consensus 84 ~~~~~D~v~~~~~~-----------~~~~~~~~~l----~~~~~--~L~~gG~l~~ 122 (241)
T PRK08317 84 PDGSFDAVRSDRVL-----------QHLEDPARAL----AEIAR--VLRPGGRVVV 122 (241)
T ss_pred CCCCceEEEEechh-----------hccCCHHHHH----HHHHH--HhcCCcEEEE
Confidence 3 79999986533 2223332222 44443 7899998764
No 91
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=99.16 E-value=5.1e-10 Score=107.82 Aligned_cols=114 Identities=16% Similarity=0.300 Sum_probs=86.5
Q ss_pred HHHHHHHHHcCCCCCCEEEEEcCcccHHHHHHHHc--CCeEEEEeCCHHHHHHHHHHhhcCCCCCCeEEEEccccCCCCC
Q 018261 43 LLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEA--GKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTDLP 120 (359)
Q Consensus 43 ~v~~~iv~~~~~~~~~~VLDIGcGtG~lt~~La~~--~~~V~avDid~~~i~~a~~~~~~~~~~~~v~~i~~D~~~~~l~ 120 (359)
.+...+++.+...+..+|||||||+|.++..+++. ..+++++|+ +.+++.+++++...++.++++++.+|+.+.+++
T Consensus 136 ~~~~~l~~~~~~~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~~~ 214 (306)
T TIGR02716 136 FAIQLLLEEAKLDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKESYP 214 (306)
T ss_pred hHHHHHHHHcCCCCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHHHHHHHHhCCccceEEEEecCccCCCCC
Confidence 34566777788888899999999999999999987 378999998 789999999988877777899999999876677
Q ss_pred CCcccc-cccccccchHHHHHHHhcCchhhHHHHHHHHHHHHHHhccCCCeeEE
Q 018261 121 YFDICV-ANIPYQISSPLTFKLLFHQPAFRCAIIMFQKEFAMRLVAQPGDKLYC 173 (359)
Q Consensus 121 ~fD~Vv-sNlPy~i~s~ii~~ll~~~~~~~~~~~~~qkE~a~Rlv~kpGg~~y~ 173 (359)
.+|+|+ ++..++|..+....++ +++.+ +++|||+++.
T Consensus 215 ~~D~v~~~~~lh~~~~~~~~~il--------------~~~~~--~L~pgG~l~i 252 (306)
T TIGR02716 215 EADAVLFCRILYSANEQLSTIMC--------------KKAFD--AMRSGGRLLI 252 (306)
T ss_pred CCCEEEeEhhhhcCChHHHHHHH--------------HHHHH--hcCCCCEEEE
Confidence 789765 4444444433222222 34433 7899998864
No 92
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=99.16 E-value=4.7e-10 Score=113.14 Aligned_cols=137 Identities=12% Similarity=0.154 Sum_probs=94.9
Q ss_pred ccCHHHHHHHHHHcCCCCCCEEEEEcCcccHHHHHHHHc---CCeEEEEeCCHHHHHHHHHHhhcCCCCCCeEEEEcccc
Q 018261 39 LKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEA---GKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVL 115 (359)
Q Consensus 39 l~d~~v~~~iv~~~~~~~~~~VLDIGcGtG~lt~~La~~---~~~V~avDid~~~i~~a~~~~~~~~~~~~v~~i~~D~~ 115 (359)
.........++..+++.++.+|||+|||+|..|..+++. +.+|+|+|+++.+++.+++++...++. +++++++|+.
T Consensus 220 ~~Qd~~s~~~~~~l~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~-~v~~~~~Da~ 298 (431)
T PRK14903 220 TVQGESSQIVPLLMELEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLS-SIEIKIADAE 298 (431)
T ss_pred EEECHHHHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCC-eEEEEECchh
Confidence 333334455556778889999999999999999999876 479999999999999999999887764 6899999998
Q ss_pred CCC---CCCCcccccccccccch-----HHHHHHHhcCchhhHHHHHHHHHHH---HHHhccCCCee-EEeecchh
Q 018261 116 KTD---LPYFDICVANIPYQISS-----PLTFKLLFHQPAFRCAIIMFQKEFA---MRLVAQPGDKL-YCRLSVNT 179 (359)
Q Consensus 116 ~~~---l~~fD~VvsNlPy~i~s-----~ii~~ll~~~~~~~~~~~~~qkE~a---~Rlv~kpGg~~-y~~lsv~~ 179 (359)
.++ ...||.|+++.|+.-.. |-+.... .+.....+...|+++. .+ .++|||.+ |+++|+..
T Consensus 299 ~l~~~~~~~fD~Vl~DaPCsg~G~~~~~p~~~~~~--~~~~~~~l~~~Q~~iL~~a~~-~LkpGG~LvYsTCs~~~ 371 (431)
T PRK14903 299 RLTEYVQDTFDRILVDAPCTSLGTARNHPEVLRRV--NKEDFKKLSEIQLRIVSQAWK-LLEKGGILLYSTCTVTK 371 (431)
T ss_pred hhhhhhhccCCEEEECCCCCCCccccCChHHHHhC--CHHHHHHHHHHHHHHHHHHHH-hcCCCCEEEEEECCCCh
Confidence 764 23699999999986332 1111100 0001111222333222 23 57888875 88887753
No 93
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=99.16 E-value=1.5e-10 Score=123.26 Aligned_cols=96 Identities=17% Similarity=0.177 Sum_probs=77.8
Q ss_pred cccCHHHHHHHHHHcCCCCCCEEEEEcCcccHHHHHHHHcCC-eEEEEeCCHHHHHHHHHHhhcCCCC-CCeEEEEcccc
Q 018261 38 ILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEAGK-MVIAVELDSRMVLELQRRFQSTPYS-NRLKVIQGDVL 115 (359)
Q Consensus 38 fl~d~~v~~~iv~~~~~~~~~~VLDIGcGtG~lt~~La~~~~-~V~avDid~~~i~~a~~~~~~~~~~-~~v~~i~~D~~ 115 (359)
|+.|....+..+..+ .++.+|||+|||+|.++..++..++ +|++||+|+.+++.|++|+..+++. .+++++++|+.
T Consensus 522 ~flDqr~~R~~~~~~--~~g~rVLDlf~gtG~~sl~aa~~Ga~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~ 599 (702)
T PRK11783 522 LFLDHRPTRRMIGQM--AKGKDFLNLFAYTGTASVHAALGGAKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCL 599 (702)
T ss_pred ECHHHHHHHHHHHHh--cCCCeEEEcCCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHH
Confidence 555655555555543 2578999999999999999998864 6999999999999999999888765 57999999987
Q ss_pred CCC---CCCCcccccccccccch
Q 018261 116 KTD---LPYFDICVANIPYQISS 135 (359)
Q Consensus 116 ~~~---l~~fD~VvsNlPy~i~s 135 (359)
++- ...||+||+|+||...+
T Consensus 600 ~~l~~~~~~fDlIilDPP~f~~~ 622 (702)
T PRK11783 600 AWLKEAREQFDLIFIDPPTFSNS 622 (702)
T ss_pred HHHHHcCCCcCEEEECCCCCCCC
Confidence 632 23799999999997654
No 94
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=99.15 E-value=4.4e-10 Score=113.88 Aligned_cols=88 Identities=11% Similarity=0.118 Sum_probs=73.5
Q ss_pred HHHHHHcCCCCCCEEEEEcCcccHHHHHHHHc---CCeEEEEeCCHHHHHHHHHHhhcCCCCCCeEEEEccccCCCCC-C
Q 018261 46 ESIVQKAGIKSTDVILEIGPGTGNLTKKLLEA---GKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTDLP-Y 121 (359)
Q Consensus 46 ~~iv~~~~~~~~~~VLDIGcGtG~lt~~La~~---~~~V~avDid~~~i~~a~~~~~~~~~~~~v~~i~~D~~~~~l~-~ 121 (359)
...+..+.+.++.+|||+|||+|..|..+++. +.+|+|+|+++.+++.+++++...++. +++++++|+.++... .
T Consensus 240 ~l~~~~l~~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~-~v~~~~~Da~~~~~~~~ 318 (445)
T PRK14904 240 ALACLLLNPQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGIT-IIETIEGDARSFSPEEQ 318 (445)
T ss_pred HHHHHhcCCCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCC-eEEEEeCcccccccCCC
Confidence 34455667788899999999999999988875 368999999999999999999887764 799999999876433 6
Q ss_pred Ccccccccccccc
Q 018261 122 FDICVANIPYQIS 134 (359)
Q Consensus 122 fD~VvsNlPy~i~ 134 (359)
||.|+.++|+.-+
T Consensus 319 fD~Vl~D~Pcsg~ 331 (445)
T PRK14904 319 PDAILLDAPCTGT 331 (445)
T ss_pred CCEEEEcCCCCCc
Confidence 9999999997543
No 95
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.14 E-value=3.2e-10 Score=115.66 Aligned_cols=115 Identities=17% Similarity=0.210 Sum_probs=84.8
Q ss_pred CHHHHHHHHHHcCCCCCCEEEEEcCcccHHHHHHHHcCCeEEEEeCCHHHHHHHHHHhhcCCCCCCeEEEEccccC--CC
Q 018261 41 NPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEAGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLK--TD 118 (359)
Q Consensus 41 d~~v~~~iv~~~~~~~~~~VLDIGcGtG~lt~~La~~~~~V~avDid~~~i~~a~~~~~~~~~~~~v~~i~~D~~~--~~ 118 (359)
+...+..+++.+...++.+|||||||+|.++..|++.+.+|+|+|+++.|+..+++..... .+++++++|+.. ++
T Consensus 22 ~~~~~~~il~~l~~~~~~~vLDlGcG~G~~~~~la~~~~~v~giD~s~~~l~~a~~~~~~~---~~i~~~~~d~~~~~~~ 98 (475)
T PLN02336 22 DKEERPEILSLLPPYEGKSVLELGAGIGRFTGELAKKAGQVIALDFIESVIKKNESINGHY---KNVKFMCADVTSPDLN 98 (475)
T ss_pred CchhhhHHHhhcCccCCCEEEEeCCCcCHHHHHHHhhCCEEEEEeCCHHHHHHHHHHhccC---CceEEEEecccccccC
Confidence 4444567777877777889999999999999999998889999999999999877643322 379999999964 33
Q ss_pred CC--CCcccccccccccchHH-HHHHHhcCchhhHHHHHHHHHHHHHHhccCCCeeEEe
Q 018261 119 LP--YFDICVANIPYQISSPL-TFKLLFHQPAFRCAIIMFQKEFAMRLVAQPGDKLYCR 174 (359)
Q Consensus 119 l~--~fD~VvsNlPy~i~s~i-i~~ll~~~~~~~~~~~~~qkE~a~Rlv~kpGg~~y~~ 174 (359)
++ .||+|+++.++++.++. ...++ +++. | +++|||.++..
T Consensus 99 ~~~~~fD~I~~~~~l~~l~~~~~~~~l--------------~~~~-r-~Lk~gG~l~~~ 141 (475)
T PLN02336 99 ISDGSVDLIFSNWLLMYLSDKEVENLA--------------ERMV-K-WLKVGGYIFFR 141 (475)
T ss_pred CCCCCEEEEehhhhHHhCCHHHHHHHH--------------HHHH-H-hcCCCeEEEEE
Confidence 33 79999998876544321 22222 3443 3 78999987543
No 96
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.14 E-value=8.9e-10 Score=106.87 Aligned_cols=92 Identities=18% Similarity=0.265 Sum_probs=77.9
Q ss_pred ccccCHHHHHHHHHHcCCCCCCEEEEEcCcccHHHHHHHHcC---CeEEEEeCCHHHHHHHHHHhhcCCCCCCeEEEEcc
Q 018261 37 HILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEAG---KMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGD 113 (359)
Q Consensus 37 ~fl~d~~v~~~iv~~~~~~~~~~VLDIGcGtG~lt~~La~~~---~~V~avDid~~~i~~a~~~~~~~~~~~~v~~i~~D 113 (359)
.+..++.+...+++.+++.++++|||||||+|.++..+++.. .+|+++|+++.+++.|++++...+. .++.++++|
T Consensus 61 ~~~~~p~l~a~ll~~L~i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~-~nV~~i~gD 139 (322)
T PRK13943 61 STSSQPSLMALFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGI-ENVIFVCGD 139 (322)
T ss_pred ccCCcHHHHHHHHHhcCCCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCC-CcEEEEeCC
Confidence 356689999999999999899999999999999999999863 3699999999999999999887765 379999999
Q ss_pred ccCCCC--CCCccccccc
Q 018261 114 VLKTDL--PYFDICVANI 129 (359)
Q Consensus 114 ~~~~~l--~~fD~VvsNl 129 (359)
+.+... ..||+|+++.
T Consensus 140 ~~~~~~~~~~fD~Ii~~~ 157 (322)
T PRK13943 140 GYYGVPEFAPYDVIFVTV 157 (322)
T ss_pred hhhcccccCCccEEEECC
Confidence 876432 3699988753
No 97
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=99.14 E-value=3.5e-10 Score=101.62 Aligned_cols=82 Identities=21% Similarity=0.315 Sum_probs=65.1
Q ss_pred HHHHHcCCCCCCEEEEEcCcccHHHHHHHHcCCeEEEEeCCHHHHHHHHHHhhcCCCCCCeEEEEccccCCCCC-CCccc
Q 018261 47 SIVQKAGIKSTDVILEIGPGTGNLTKKLLEAGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTDLP-YFDIC 125 (359)
Q Consensus 47 ~iv~~~~~~~~~~VLDIGcGtG~lt~~La~~~~~V~avDid~~~i~~a~~~~~~~~~~~~v~~i~~D~~~~~l~-~fD~V 125 (359)
.++++++..++.++||+|||.|..+..|+++|..|+|+|+|+..++.+++.....++ .++....|+.+..++ .||+|
T Consensus 21 ~v~~a~~~~~~g~~LDlgcG~GRNalyLA~~G~~VtAvD~s~~al~~l~~~a~~~~l--~i~~~~~Dl~~~~~~~~yD~I 98 (192)
T PF03848_consen 21 EVLEAVPLLKPGKALDLGCGEGRNALYLASQGFDVTAVDISPVALEKLQRLAEEEGL--DIRTRVADLNDFDFPEEYDFI 98 (192)
T ss_dssp HHHHHCTTS-SSEEEEES-TTSHHHHHHHHTT-EEEEEESSHHHHHHHHHHHHHTT---TEEEEE-BGCCBS-TTTEEEE
T ss_pred HHHHHHhhcCCCcEEEcCCCCcHHHHHHHHCCCeEEEEECCHHHHHHHHHHHhhcCc--eeEEEEecchhccccCCcCEE
Confidence 355566777788999999999999999999999999999999999999888776665 588999999887765 79998
Q ss_pred ccccc
Q 018261 126 VANIP 130 (359)
Q Consensus 126 vsNlP 130 (359)
++...
T Consensus 99 ~st~v 103 (192)
T PF03848_consen 99 VSTVV 103 (192)
T ss_dssp EEESS
T ss_pred EEEEE
Confidence 87543
No 98
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=99.14 E-value=1.4e-10 Score=105.80 Aligned_cols=96 Identities=25% Similarity=0.368 Sum_probs=75.2
Q ss_pred CCcccccCHHHHHHHHHHcCCCCCCEEEEEcCcccHHHHHHHHc-C--CeEEEEeCCHHHHHHHHHHhhcCCCCCCeEEE
Q 018261 34 KGQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEA-G--KMVIAVELDSRMVLELQRRFQSTPYSNRLKVI 110 (359)
Q Consensus 34 ~GQ~fl~d~~v~~~iv~~~~~~~~~~VLDIGcGtG~lt~~La~~-~--~~V~avDid~~~i~~a~~~~~~~~~~~~v~~i 110 (359)
.|| .+..|.+..+|++.+.+.++++|||||||+|++|..|+.. + .+|++||+++.+++.|++++...+.. |+.++
T Consensus 51 ~~~-~is~P~~~a~~l~~L~l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~-nv~~~ 128 (209)
T PF01135_consen 51 CGQ-TISAPSMVARMLEALDLKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGID-NVEVV 128 (209)
T ss_dssp TTE-EE--HHHHHHHHHHTTC-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTH-SEEEE
T ss_pred cee-echHHHHHHHHHHHHhcCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccC-ceeEE
Confidence 344 4577999999999999999999999999999999999987 3 47999999999999999999876643 89999
Q ss_pred EccccCCC--CCCCccccccccc
Q 018261 111 QGDVLKTD--LPYFDICVANIPY 131 (359)
Q Consensus 111 ~~D~~~~~--l~~fD~VvsNlPy 131 (359)
++|...-. ...||.|+++...
T Consensus 129 ~gdg~~g~~~~apfD~I~v~~a~ 151 (209)
T PF01135_consen 129 VGDGSEGWPEEAPFDRIIVTAAV 151 (209)
T ss_dssp ES-GGGTTGGG-SEEEEEESSBB
T ss_pred EcchhhccccCCCcCEEEEeecc
Confidence 99987632 2279998887543
No 99
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=99.13 E-value=6.9e-10 Score=110.29 Aligned_cols=112 Identities=21% Similarity=0.262 Sum_probs=82.8
Q ss_pred HHHHHHHHHcCCCCCCEEEEEcCcccHHHHHHHHc-CCeEEEEeCCHHHHHHHHHHhhcCCCCCCeEEEEccccCCCCCC
Q 018261 43 LLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEA-GKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTDLPY 121 (359)
Q Consensus 43 ~v~~~iv~~~~~~~~~~VLDIGcGtG~lt~~La~~-~~~V~avDid~~~i~~a~~~~~~~~~~~~v~~i~~D~~~~~l~~ 121 (359)
..+..+++.+.+.++.+|||||||+|.++..+++. +.+|+|+|+|+.+++.|+++.... ++++..+|+.+++ ..
T Consensus 154 ~k~~~l~~~l~l~~g~rVLDIGcG~G~~a~~la~~~g~~V~giDlS~~~l~~A~~~~~~l----~v~~~~~D~~~l~-~~ 228 (383)
T PRK11705 154 AKLDLICRKLQLKPGMRVLDIGCGWGGLARYAAEHYGVSVVGVTISAEQQKLAQERCAGL----PVEIRLQDYRDLN-GQ 228 (383)
T ss_pred HHHHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhccC----eEEEEECchhhcC-CC
Confidence 34566778888899999999999999999999976 789999999999999999987532 5888899987653 57
Q ss_pred CcccccccccccchHHHHHHHhcCchhhHHHHHHHHHHHHHHhccCCCeeEEe
Q 018261 122 FDICVANIPYQISSPLTFKLLFHQPAFRCAIIMFQKEFAMRLVAQPGDKLYCR 174 (359)
Q Consensus 122 fD~VvsNlPy~i~s~ii~~ll~~~~~~~~~~~~~qkE~a~Rlv~kpGg~~y~~ 174 (359)
||.|+++..++...+ ..+...+ +++. | +++|||.++..
T Consensus 229 fD~Ivs~~~~ehvg~---------~~~~~~l----~~i~-r-~LkpGG~lvl~ 266 (383)
T PRK11705 229 FDRIVSVGMFEHVGP---------KNYRTYF----EVVR-R-CLKPDGLFLLH 266 (383)
T ss_pred CCEEEEeCchhhCCh---------HHHHHHH----HHHH-H-HcCCCcEEEEE
Confidence 999998653322111 0111111 3443 3 78999988654
No 100
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=99.13 E-value=7.4e-10 Score=101.75 Aligned_cols=89 Identities=20% Similarity=0.368 Sum_probs=73.8
Q ss_pred CHHHHHHHHHHcCCCCCCEEEEEcCcccHHHHHHHHcC---CeEEEEeCCHHHHHHHHHHhhcCCCCCCeEEEEccccCC
Q 018261 41 NPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEAG---KMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKT 117 (359)
Q Consensus 41 d~~v~~~iv~~~~~~~~~~VLDIGcGtG~lt~~La~~~---~~V~avDid~~~i~~a~~~~~~~~~~~~v~~i~~D~~~~ 117 (359)
...+...++..+...++.+|||||||+|.++..+++.. .+|+++|+++.+++.+++++...+...++.++.+|+.+.
T Consensus 36 ~~~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~ 115 (239)
T PRK00216 36 HRVWRRKTIKWLGVRPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEAL 115 (239)
T ss_pred cHHHHHHHHHHhCCCCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccC
Confidence 45666778888877778899999999999999998875 799999999999999999886644445799999999876
Q ss_pred CCC--CCccccccc
Q 018261 118 DLP--YFDICVANI 129 (359)
Q Consensus 118 ~l~--~fD~VvsNl 129 (359)
..+ .||+|+++.
T Consensus 116 ~~~~~~~D~I~~~~ 129 (239)
T PRK00216 116 PFPDNSFDAVTIAF 129 (239)
T ss_pred CCCCCCccEEEEec
Confidence 543 699988754
No 101
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=99.13 E-value=2.1e-10 Score=102.57 Aligned_cols=82 Identities=24% Similarity=0.348 Sum_probs=62.1
Q ss_pred HcCCCCCCEEEEEcCcccHHHHHHHHcCCeEEEEeCCHHHHHHHHHHhhcCCCCCCeEEEEccccCCCCC-CCccccc-c
Q 018261 51 KAGIKSTDVILEIGPGTGNLTKKLLEAGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTDLP-YFDICVA-N 128 (359)
Q Consensus 51 ~~~~~~~~~VLDIGcGtG~lt~~La~~~~~V~avDid~~~i~~a~~~~~~~~~~~~v~~i~~D~~~~~l~-~fD~Vvs-N 128 (359)
.+.-..-.++||+|||.|.+|..|+.++.+++++|+++.+++.|++++...+ +|+++++|+.+...+ .||+||. -
T Consensus 38 aLp~~ry~~alEvGCs~G~lT~~LA~rCd~LlavDis~~Al~~Ar~Rl~~~~---~V~~~~~dvp~~~P~~~FDLIV~SE 114 (201)
T PF05401_consen 38 ALPRRRYRRALEVGCSIGVLTERLAPRCDRLLAVDISPRALARARERLAGLP---HVEWIQADVPEFWPEGRFDLIVLSE 114 (201)
T ss_dssp HHTTSSEEEEEEE--TTSHHHHHHGGGEEEEEEEES-HHHHHHHHHHTTT-S---SEEEEES-TTT---SS-EEEEEEES
T ss_pred hcCccccceeEecCCCccHHHHHHHHhhCceEEEeCCHHHHHHHHHhcCCCC---CeEEEECcCCCCCCCCCeeEEEEeh
Confidence 4555566789999999999999999999999999999999999999998765 899999999876433 7997655 5
Q ss_pred cccccch
Q 018261 129 IPYQISS 135 (359)
Q Consensus 129 lPy~i~s 135 (359)
+-||++.
T Consensus 115 VlYYL~~ 121 (201)
T PF05401_consen 115 VLYYLDD 121 (201)
T ss_dssp -GGGSSS
T ss_pred HhHcCCC
Confidence 7777764
No 102
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=99.13 E-value=5.1e-10 Score=109.16 Aligned_cols=111 Identities=21% Similarity=0.266 Sum_probs=82.1
Q ss_pred HHHHHHHHHHcCC-CCCCEEEEEcCcccHHHHHHHHc--CCeEEEEeCCHHHHHHHHHHhhcCCCCCCeEEEEccccCCC
Q 018261 42 PLLVESIVQKAGI-KSTDVILEIGPGTGNLTKKLLEA--GKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTD 118 (359)
Q Consensus 42 ~~v~~~iv~~~~~-~~~~~VLDIGcGtG~lt~~La~~--~~~V~avDid~~~i~~a~~~~~~~~~~~~v~~i~~D~~~~~ 118 (359)
..+.+.+++.+.+ .++.+|||||||+|.++..+++. +.+|+++|+++.|++.|+++... .+++++.+|+.+++
T Consensus 98 e~~r~~~l~~~~l~~~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~~----~~i~~i~gD~e~lp 173 (340)
T PLN02490 98 EDMRDDALEPADLSDRNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL----KECKIIEGDAEDLP 173 (340)
T ss_pred HHHHHHHHhhcccCCCCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhhc----cCCeEEeccHHhCC
Confidence 4455556666655 35789999999999999998875 47899999999999999987642 26889999999876
Q ss_pred CC--CCcccccccccccchHHHHHHHhcCchhhHHHHHHHHHHHHHHhccCCCeeEE
Q 018261 119 LP--YFDICVANIPYQISSPLTFKLLFHQPAFRCAIIMFQKEFAMRLVAQPGDKLYC 173 (359)
Q Consensus 119 l~--~fD~VvsNlPy~i~s~ii~~ll~~~~~~~~~~~~~qkE~a~Rlv~kpGg~~y~ 173 (359)
++ .||+|+++..++ +.++....+ +++.+ +++|||.+..
T Consensus 174 ~~~~sFDvVIs~~~L~-----------~~~d~~~~L----~e~~r--vLkPGG~LvI 213 (340)
T PLN02490 174 FPTDYADRYVSAGSIE-----------YWPDPQRGI----KEAYR--VLKIGGKACL 213 (340)
T ss_pred CCCCceeEEEEcChhh-----------hCCCHHHHH----HHHHH--hcCCCcEEEE
Confidence 54 699999876433 222222222 45543 8899999754
No 103
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=99.13 E-value=5.7e-10 Score=101.94 Aligned_cols=109 Identities=15% Similarity=0.204 Sum_probs=70.2
Q ss_pred HHHcC-CCCCCEEEEEcCcccHHHHHHHHcC---CeEEEEeCCHHHHHHHHHHhhcCCCCCCeEEEEccccCCC------
Q 018261 49 VQKAG-IKSTDVILEIGPGTGNLTKKLLEAG---KMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTD------ 118 (359)
Q Consensus 49 v~~~~-~~~~~~VLDIGcGtG~lt~~La~~~---~~V~avDid~~~i~~a~~~~~~~~~~~~v~~i~~D~~~~~------ 118 (359)
.+... +.++.+|||||||+|.++..+++.. .+|+|||+++ | ... .+++++++|+.+..
T Consensus 43 ~~~~~~~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~-~--------~~~---~~v~~i~~D~~~~~~~~~i~ 110 (209)
T PRK11188 43 QQSDKLFKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP-M--------DPI---VGVDFLQGDFRDELVLKALL 110 (209)
T ss_pred HHHhccCCCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc-c--------cCC---CCcEEEecCCCChHHHHHHH
Confidence 33444 4678899999999999999998873 5899999998 2 111 26899999998842
Q ss_pred ----CCCCcccccccccccchHHHHHHHhcCchhhHHHHHHHHHHHHHHhccCCCeeEEee
Q 018261 119 ----LPYFDICVANIPYQISSPLTFKLLFHQPAFRCAIIMFQKEFAMRLVAQPGDKLYCRL 175 (359)
Q Consensus 119 ----l~~fD~VvsNlPy~i~s~ii~~ll~~~~~~~~~~~~~qkE~a~Rlv~kpGg~~y~~l 175 (359)
...||+|+||+..+++.........+......++ +++ .| +++|||.++..+
T Consensus 111 ~~~~~~~~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L----~~~-~~-~LkpGG~~vi~~ 165 (209)
T PRK11188 111 ERVGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELAL----DMC-RD-VLAPGGSFVVKV 165 (209)
T ss_pred HHhCCCCCCEEecCCCCccCCChHHHHHHHHHHHHHHH----HHH-HH-HcCCCCEEEEEE
Confidence 2379999999854443211111111000011111 333 33 889999987643
No 104
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=99.12 E-value=5.6e-10 Score=112.49 Aligned_cols=135 Identities=17% Similarity=0.209 Sum_probs=92.0
Q ss_pred HHHHHHHHHHcCCCCCCEEEEEcCcccHHHHHHHHc--CCeEEEEeCCHHHHHHHHHHhhcCCCCCCeEEEEccccCCCC
Q 018261 42 PLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEA--GKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTDL 119 (359)
Q Consensus 42 ~~v~~~iv~~~~~~~~~~VLDIGcGtG~lt~~La~~--~~~V~avDid~~~i~~a~~~~~~~~~~~~v~~i~~D~~~~~l 119 (359)
..-...++..+++.++.+|||+|||+|..|..+++. ..+|+|+|+++.++..+++++...++..++.++.+|......
T Consensus 224 d~~s~~~~~~L~~~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~~ 303 (426)
T TIGR00563 224 DASAQWVATWLAPQNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPSQ 303 (426)
T ss_pred CHHHHHHHHHhCCCCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeccccccccc
Confidence 344566777788889999999999999999999986 379999999999999999999887754234447778765432
Q ss_pred ----CCCcccccccccccchH-----HHHHHHhcCchhhHHHHHHHHHH---HHHHhccCCCee-EEeecchh
Q 018261 120 ----PYFDICVANIPYQISSP-----LTFKLLFHQPAFRCAIIMFQKEF---AMRLVAQPGDKL-YCRLSVNT 179 (359)
Q Consensus 120 ----~~fD~VvsNlPy~i~s~-----ii~~ll~~~~~~~~~~~~~qkE~---a~Rlv~kpGg~~-y~~lsv~~ 179 (359)
..||.|+++.|+.-+.- -+ ++... +.-...+...|+++ +.+ +++|||.+ |+++|+..
T Consensus 304 ~~~~~~fD~VllDaPcSg~G~~~~~p~~-~~~~~-~~~~~~l~~lQ~~lL~~a~~-~LkpgG~lvystcs~~~ 373 (426)
T TIGR00563 304 WAENEQFDRILLDAPCSATGVIRRHPDI-KWLRK-PRDIAELAELQSEILDAIWP-LLKTGGTLVYATCSVLP 373 (426)
T ss_pred cccccccCEEEEcCCCCCCcccccCcch-hhcCC-HHHHHHHHHHHHHHHHHHHH-hcCCCcEEEEEeCCCCh
Confidence 36999999999774421 11 01000 00001122233333 223 67899876 88888753
No 105
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=99.12 E-value=5e-10 Score=100.98 Aligned_cols=110 Identities=19% Similarity=0.257 Sum_probs=78.3
Q ss_pred CCCEEEEEcCcccHHHHHHHHc--CCeEEEEeCCHHHHHHHHHHhhcCCCCCCeEEEEccccCCC---C--CCCcccccc
Q 018261 56 STDVILEIGPGTGNLTKKLLEA--GKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTD---L--PYFDICVAN 128 (359)
Q Consensus 56 ~~~~VLDIGcGtG~lt~~La~~--~~~V~avDid~~~i~~a~~~~~~~~~~~~v~~i~~D~~~~~---l--~~fD~VvsN 128 (359)
...+|||||||+|.++..+++. ...|+|+|+++.|+..|+++....++. |++++++|+.++. + ..+|.|++|
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l~-ni~~i~~d~~~~~~~~~~~~~~d~v~~~ 94 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGLK-NLHVLCGDANELLDKFFPDGSLSKVFLN 94 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCCC-CEEEEccCHHHHHHhhCCCCceeEEEEE
Confidence 4568999999999999999987 478999999999999999988776654 8999999997642 2 268999999
Q ss_pred cccccchHHHHHHHhcCchhhHHHHHHHHHHHHHHhccCCCeeEEee
Q 018261 129 IPYQISSPLTFKLLFHQPAFRCAIIMFQKEFAMRLVAQPGDKLYCRL 175 (359)
Q Consensus 129 lPy~i~s~ii~~ll~~~~~~~~~~~~~qkE~a~Rlv~kpGg~~y~~l 175 (359)
.|-.|.... +.. + ......++ +++++ +++|||.++...
T Consensus 95 ~pdpw~k~~--h~~-~-r~~~~~~l---~~~~r--~LkpgG~l~~~t 132 (194)
T TIGR00091 95 FPDPWPKKR--HNK-R-RITQPHFL---KEYAN--VLKKGGVIHFKT 132 (194)
T ss_pred CCCcCCCCC--ccc-c-ccCCHHHH---HHHHH--HhCCCCEEEEEe
Confidence 875543210 000 0 00001111 34443 789999987654
No 106
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=99.12 E-value=5.3e-10 Score=112.92 Aligned_cols=95 Identities=18% Similarity=0.181 Sum_probs=78.4
Q ss_pred cccCHHHHHHHHHHcCCCCCCEEEEEcCcccHHHHHHHHc---CCeEEEEeCCHHHHHHHHHHhhcCCCCCCeEEEEccc
Q 018261 38 ILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEA---GKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDV 114 (359)
Q Consensus 38 fl~d~~v~~~iv~~~~~~~~~~VLDIGcGtG~lt~~La~~---~~~V~avDid~~~i~~a~~~~~~~~~~~~v~~i~~D~ 114 (359)
|.........++..+++.++.+|||+|||+|..|..+++. ..+|+|+|+++.++..+++++...++. +++++++|+
T Consensus 234 ~~~qd~~s~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~-~v~~~~~D~ 312 (434)
T PRK14901 234 WTVQDRSAQLVAPLLDPQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLK-SIKILAADS 312 (434)
T ss_pred EEEECHHHHHHHHHhCCCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCC-eEEEEeCCh
Confidence 4444445556667788889999999999999999999876 258999999999999999999888764 699999999
Q ss_pred cCCC----C--CCCccccccccccc
Q 018261 115 LKTD----L--PYFDICVANIPYQI 133 (359)
Q Consensus 115 ~~~~----l--~~fD~VvsNlPy~i 133 (359)
.++. . ..||.|+++.|..-
T Consensus 313 ~~~~~~~~~~~~~fD~Vl~DaPCSg 337 (434)
T PRK14901 313 RNLLELKPQWRGYFDRILLDAPCSG 337 (434)
T ss_pred hhcccccccccccCCEEEEeCCCCc
Confidence 8764 1 36999999999753
No 107
>PLN02672 methionine S-methyltransferase
Probab=99.11 E-value=5.6e-10 Score=122.04 Aligned_cols=99 Identities=16% Similarity=0.170 Sum_probs=76.3
Q ss_pred cccCHHHHHHHHHHcCCC-----CCCEEEEEcCcccHHHHHHHHcC--CeEEEEeCCHHHHHHHHHHhhcCCC-------
Q 018261 38 ILKNPLLVESIVQKAGIK-----STDVILEIGPGTGNLTKKLLEAG--KMVIAVELDSRMVLELQRRFQSTPY------- 103 (359)
Q Consensus 38 fl~d~~v~~~iv~~~~~~-----~~~~VLDIGcGtG~lt~~La~~~--~~V~avDid~~~i~~a~~~~~~~~~------- 103 (359)
-|+.+...+.+++.+... ++.+|||+|||+|.+++.|++.. .+|+|+|+|+.+++.|++|...+++
T Consensus 95 VLIPRpeTE~lve~L~~~~~~~~~~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~ 174 (1082)
T PLN02672 95 IFIPEDWSFTFYEGLNRHPDSIFRDKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPV 174 (1082)
T ss_pred cccCchhHHHHHHHHHhcccccCCCCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCcccccccc
Confidence 455555556666654322 24589999999999999999863 6899999999999999999876532
Q ss_pred --------CCCeEEEEccccCCCCC---CCcccccccccccchH
Q 018261 104 --------SNRLKVIQGDVLKTDLP---YFDICVANIPYQISSP 136 (359)
Q Consensus 104 --------~~~v~~i~~D~~~~~l~---~fD~VvsNlPy~i~s~ 136 (359)
..+++++++|+++.... .||+||||+||-...+
T Consensus 175 ~~~~~~~l~~rV~f~~sDl~~~~~~~~~~fDlIVSNPPYI~~~e 218 (1082)
T PLN02672 175 YDGEGKTLLDRVEFYESDLLGYCRDNNIELDRIVGCIPQILNPN 218 (1082)
T ss_pred cccccccccccEEEEECchhhhccccCCceEEEEECCCcCCCcc
Confidence 23799999999874322 5999999999986653
No 108
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=99.11 E-value=4.3e-10 Score=103.15 Aligned_cols=111 Identities=26% Similarity=0.380 Sum_probs=80.2
Q ss_pred HHHHHHHHHHcCC---CCCCEEEEEcCcccHHHHHHHHcC--CeEEEEeCCHHHHHHHHHHhhcCCCCCCeEEEEccccC
Q 018261 42 PLLVESIVQKAGI---KSTDVILEIGPGTGNLTKKLLEAG--KMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLK 116 (359)
Q Consensus 42 ~~v~~~iv~~~~~---~~~~~VLDIGcGtG~lt~~La~~~--~~V~avDid~~~i~~a~~~~~~~~~~~~v~~i~~D~~~ 116 (359)
..+...+++.+.. ..+.+|||||||+|.++..+++.+ .+|+++|+++.++..++++.. .++.++.+|+.+
T Consensus 17 ~~~~~~l~~~~~~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~-----~~~~~~~~d~~~ 91 (240)
T TIGR02072 17 REMAKRLLALLKEKGIFIPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLS-----ENVQFICGDAEK 91 (240)
T ss_pred HHHHHHHHHHhhhhccCCCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcC-----CCCeEEecchhh
Confidence 3444555554432 345789999999999999999874 568999999999999988764 268899999988
Q ss_pred CCCC--CCcccccccccccchHHHHHHHhcCchhhHHHHHHHHHHHHHHhccCCCeeEEe
Q 018261 117 TDLP--YFDICVANIPYQISSPLTFKLLFHQPAFRCAIIMFQKEFAMRLVAQPGDKLYCR 174 (359)
Q Consensus 117 ~~l~--~fD~VvsNlPy~i~s~ii~~ll~~~~~~~~~~~~~qkE~a~Rlv~kpGg~~y~~ 174 (359)
.+++ .||+|+++..+++..+ +...+ +++ +.+++|||.++..
T Consensus 92 ~~~~~~~fD~vi~~~~l~~~~~-----------~~~~l----~~~--~~~L~~~G~l~~~ 134 (240)
T TIGR02072 92 LPLEDSSFDLIVSNLALQWCDD-----------LSQAL----SEL--ARVLKPGGLLAFS 134 (240)
T ss_pred CCCCCCceeEEEEhhhhhhccC-----------HHHHH----HHH--HHHcCCCcEEEEE
Confidence 7643 6999999876554422 22222 333 2378999988754
No 109
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=99.11 E-value=2e-09 Score=98.84 Aligned_cols=86 Identities=23% Similarity=0.264 Sum_probs=67.9
Q ss_pred HHHHHHHcC---CCCCCEEEEEcCcccHHHHHHHHcCCeEEEEeCCHHHHHHHHHHhhcCCCCCCeEEEEccccCCCCCC
Q 018261 45 VESIVQKAG---IKSTDVILEIGPGTGNLTKKLLEAGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTDLPY 121 (359)
Q Consensus 45 ~~~iv~~~~---~~~~~~VLDIGcGtG~lt~~La~~~~~V~avDid~~~i~~a~~~~~~~~~~~~v~~i~~D~~~~~l~~ 121 (359)
.+.++..+. ..++.+|||||||+|.++..|++.+.+|+++|+|+.|+..|++++...+...++.++.+|+.. ....
T Consensus 49 ~~~~~~~l~~~~~~~~~~vLDvGcG~G~~~~~l~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~-~~~~ 127 (230)
T PRK07580 49 RDTVLSWLPADGDLTGLRILDAGCGVGSLSIPLARRGAKVVASDISPQMVEEARERAPEAGLAGNITFEVGDLES-LLGR 127 (230)
T ss_pred HHHHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCchh-ccCC
Confidence 344444443 356789999999999999999998889999999999999999988766544578999999543 3357
Q ss_pred Cccccccccc
Q 018261 122 FDICVANIPY 131 (359)
Q Consensus 122 fD~VvsNlPy 131 (359)
||+|+++..+
T Consensus 128 fD~v~~~~~l 137 (230)
T PRK07580 128 FDTVVCLDVL 137 (230)
T ss_pred cCEEEEcchh
Confidence 9999886543
No 110
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=99.11 E-value=9.1e-10 Score=99.09 Aligned_cols=97 Identities=15% Similarity=0.225 Sum_probs=78.1
Q ss_pred ccccCHHHHHHHHHHcC-CCCCCEEEEEcCcccHHHHHHHHcCC-eEEEEeCCHHHHHHHHHHhhcCCCCCCeEEEEccc
Q 018261 37 HILKNPLLVESIVQKAG-IKSTDVILEIGPGTGNLTKKLLEAGK-MVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDV 114 (359)
Q Consensus 37 ~fl~d~~v~~~iv~~~~-~~~~~~VLDIGcGtG~lt~~La~~~~-~V~avDid~~~i~~a~~~~~~~~~~~~v~~i~~D~ 114 (359)
-.-++..+.+.+...+. ...+.+|||++||+|.++..++.+++ +|++||+++.++..+++++..+++..+++++++|+
T Consensus 29 ~rpt~~~vrea~f~~l~~~~~g~~vLDLfaGsG~lglea~srga~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~ 108 (189)
T TIGR00095 29 TRPTTRVVRELFFNILRPEIQGAHLLDVFAGSGLLGEEALSRGAKVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSA 108 (189)
T ss_pred CCCchHHHHHHHHHHHHHhcCCCEEEEecCCCcHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhH
Confidence 34567777777777653 23578999999999999999999974 89999999999999999998877655799999999
Q ss_pred cCC-C-C---C-CCccccccccccc
Q 018261 115 LKT-D-L---P-YFDICVANIPYQI 133 (359)
Q Consensus 115 ~~~-~-l---~-~fD~VvsNlPy~i 133 (359)
.+. . + . .||+|+.++||..
T Consensus 109 ~~~l~~~~~~~~~~dvv~~DPPy~~ 133 (189)
T TIGR00095 109 LRALKFLAKKPTFDNVIYLDPPFFN 133 (189)
T ss_pred HHHHHHhhccCCCceEEEECcCCCC
Confidence 653 1 1 1 3789999999963
No 111
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=99.10 E-value=2.2e-09 Score=99.27 Aligned_cols=141 Identities=23% Similarity=0.265 Sum_probs=105.4
Q ss_pred HHHHHHHHcCCCCCCEEEEEcCcccHHHHHHHHc---CCeEEEEeCCHHHHHHHHHHhhcCCCCCCeEEEEccccCCCCC
Q 018261 44 LVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEA---GKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTDLP 120 (359)
Q Consensus 44 v~~~iv~~~~~~~~~~VLDIGcGtG~lt~~La~~---~~~V~avDid~~~i~~a~~~~~~~~~~~~v~~i~~D~~~~~l~ 120 (359)
=+..|+..+++.++++|||.|+|+|++|..|+.. ..+|+.+|+.++.++.|++|+...++.+++++..+|+.+...+
T Consensus 82 D~~~I~~~~gi~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~~~ 161 (256)
T COG2519 82 DAGYIVARLGISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVREGIDE 161 (256)
T ss_pred CHHHHHHHcCCCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEeccccccccc
Confidence 3467788899999999999999999999999975 2799999999999999999999888877799999999885544
Q ss_pred -CCcccccccccccchHHHHHHHhcCchhhHHHHHHHHHHHHHHhccCCCeeEEeecchhhhHHhhhhhhccCCCCccCC
Q 018261 121 -YFDICVANIPYQISSPLTFKLLFHQPAFRCAIIMFQKEFAMRLVAQPGDKLYCRLSVNTQLHARVSHLLKVGKNNFRPP 199 (359)
Q Consensus 121 -~fD~VvsNlPy~i~s~ii~~ll~~~~~~~~~~~~~qkE~a~Rlv~kpGg~~y~~lsv~~q~~~~v~~l~~v~~~~F~P~ 199 (359)
.||+|+..+|=-| +.++| +.. +++|||.+..-+....|....+..+.. ..|.-.
T Consensus 162 ~~vDav~LDmp~PW------~~le~---------------~~~-~Lkpgg~~~~y~P~veQv~kt~~~l~~---~g~~~i 216 (256)
T COG2519 162 EDVDAVFLDLPDPW------NVLEH---------------VSD-ALKPGGVVVVYSPTVEQVEKTVEALRE---RGFVDI 216 (256)
T ss_pred cccCEEEEcCCChH------HHHHH---------------HHH-HhCCCcEEEEEcCCHHHHHHHHHHHHh---cCccch
Confidence 7999999887332 23322 212 789999876555656666666555543 256555
Q ss_pred CCcceeEEEE
Q 018261 200 PKVDSSVVRI 209 (359)
Q Consensus 200 P~V~S~vv~l 209 (359)
..++...-++
T Consensus 217 e~~E~l~R~~ 226 (256)
T COG2519 217 EAVETLVRRW 226 (256)
T ss_pred hhheeeehee
Confidence 4554443333
No 112
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=99.09 E-value=9.2e-10 Score=111.50 Aligned_cols=88 Identities=15% Similarity=0.204 Sum_probs=74.5
Q ss_pred HHHHHHHHcCCCCCCEEEEEcCcccHHHHHHHHc---CCeEEEEeCCHHHHHHHHHHhhcCCCCCCeEEEEccccCCC--
Q 018261 44 LVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEA---GKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTD-- 118 (359)
Q Consensus 44 v~~~iv~~~~~~~~~~VLDIGcGtG~lt~~La~~---~~~V~avDid~~~i~~a~~~~~~~~~~~~v~~i~~D~~~~~-- 118 (359)
....++..+.+.++.+|||+|||+|..|..+++. ..+|+|+|+++.+++.+++++...++. +++++++|+.++.
T Consensus 238 ~s~lv~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~-~v~~~~~D~~~~~~~ 316 (444)
T PRK14902 238 SSMLVAPALDPKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLT-NIETKALDARKVHEK 316 (444)
T ss_pred HHHHHHHHhCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-eEEEEeCCcccccch
Confidence 3445556777888899999999999999999975 368999999999999999999887764 5999999998753
Q ss_pred C-CCCcccccccccc
Q 018261 119 L-PYFDICVANIPYQ 132 (359)
Q Consensus 119 l-~~fD~VvsNlPy~ 132 (359)
+ ..||+|++|+|+.
T Consensus 317 ~~~~fD~Vl~D~Pcs 331 (444)
T PRK14902 317 FAEKFDKILVDAPCS 331 (444)
T ss_pred hcccCCEEEEcCCCC
Confidence 2 3799999999975
No 113
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=99.08 E-value=1.5e-09 Score=100.88 Aligned_cols=95 Identities=22% Similarity=0.301 Sum_probs=76.8
Q ss_pred HHHHHHHHHHcC---CCCCCEEEEEcCcccHHHHHHHHc--CCeEEEEeCCHHHHHHHHHHhhcCCCCCCeEEEEccccC
Q 018261 42 PLLVESIVQKAG---IKSTDVILEIGPGTGNLTKKLLEA--GKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLK 116 (359)
Q Consensus 42 ~~v~~~iv~~~~---~~~~~~VLDIGcGtG~lt~~La~~--~~~V~avDid~~~i~~a~~~~~~~~~~~~v~~i~~D~~~ 116 (359)
+.+++.+++.++ ...+..+||+|||+|+++..++.. ..+|+|||.|+.++..|.+|++.+.+.+++.+++-++..
T Consensus 131 EE~V~~Vid~~~~~~~~~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~~me~ 210 (328)
T KOG2904|consen 131 EEWVEAVIDALNNSEHSKHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVIHNIMES 210 (328)
T ss_pred HHHHHHHHHHHhhhhhcccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHhhcCceEEEeccccc
Confidence 567777777654 345568999999999999999875 478999999999999999999998888899998665543
Q ss_pred C-------CCCCCcccccccccccchH
Q 018261 117 T-------DLPYFDICVANIPYQISSP 136 (359)
Q Consensus 117 ~-------~l~~fD~VvsNlPy~i~s~ 136 (359)
- .....|+++||+||--+.+
T Consensus 211 d~~~~~~l~~~~~dllvsNPPYI~~dD 237 (328)
T KOG2904|consen 211 DASDEHPLLEGKIDLLVSNPPYIRKDD 237 (328)
T ss_pred ccccccccccCceeEEecCCCcccccc
Confidence 1 1236899999999987765
No 114
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=99.08 E-value=2.3e-09 Score=95.64 Aligned_cols=144 Identities=20% Similarity=0.226 Sum_probs=97.9
Q ss_pred HHHHHcCCCCCCEEEEEcCcccHHHHHHHHc-CCeEEEEeCCHHHHHHHHHHhhcCCCCCCeEEEEccccC----CCCCC
Q 018261 47 SIVQKAGIKSTDVILEIGPGTGNLTKKLLEA-GKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLK----TDLPY 121 (359)
Q Consensus 47 ~iv~~~~~~~~~~VLDIGcGtG~lt~~La~~-~~~V~avDid~~~i~~a~~~~~~~~~~~~v~~i~~D~~~----~~l~~ 121 (359)
.|++. +.++.+|||+|||.|.+...|.+. +.+.+|||+|++.+..+.++ .+.++++|+.+ ++-.+
T Consensus 6 ~I~~~--I~pgsrVLDLGCGdG~LL~~L~~~k~v~g~GvEid~~~v~~cv~r--------Gv~Viq~Dld~gL~~f~d~s 75 (193)
T PF07021_consen 6 IIAEW--IEPGSRVLDLGCGDGELLAYLKDEKQVDGYGVEIDPDNVAACVAR--------GVSVIQGDLDEGLADFPDQS 75 (193)
T ss_pred HHHHH--cCCCCEEEecCCCchHHHHHHHHhcCCeEEEEecCHHHHHHHHHc--------CCCEEECCHHHhHhhCCCCC
Confidence 34444 467899999999999999999874 78999999999998887664 57899999875 22237
Q ss_pred CcccccccccccchHHHHHHHhcCchhhHHHHHHHHHHHHHHhccCCCeeEEeecchhhhHHhhhhhh--ccCCCCccCC
Q 018261 122 FDICVANIPYQISSPLTFKLLFHQPAFRCAIIMFQKEFAMRLVAQPGDKLYCRLSVNTQLHARVSHLL--KVGKNNFRPP 199 (359)
Q Consensus 122 fD~VvsNlPy~i~s~ii~~ll~~~~~~~~~~~~~qkE~a~Rlv~kpGg~~y~~lsv~~q~~~~v~~l~--~v~~~~F~P~ 199 (359)
||.||.+- .|.+...+...+ +|+ ++-|.....+++-+..|......++ +.|.+...|.
T Consensus 76 FD~VIlsq-----------tLQ~~~~P~~vL----~Em-----lRVgr~~IVsFPNFg~W~~R~~l~~~GrmPvt~~lPy 135 (193)
T PF07021_consen 76 FDYVILSQ-----------TLQAVRRPDEVL----EEM-----LRVGRRAIVSFPNFGHWRNRLQLLLRGRMPVTKALPY 135 (193)
T ss_pred ccEEehHh-----------HHHhHhHHHHHH----HHH-----HHhcCeEEEEecChHHHHHHHHHHhcCCCCCCCCCCC
Confidence 99998754 333333333333 344 3346677777766655555555552 5666777776
Q ss_pred CCcceeEEEEeeCCCCCCCChHHHHHHHH
Q 018261 200 PKVDSSVVRIEPRKPRPQVNPVEWDGFLR 228 (359)
Q Consensus 200 P~V~S~vv~l~~~~~~~~~~~~~~~~lvr 228 (359)
+..++.-++ .+..++|..+.+
T Consensus 136 ~WYdTPNih--------~~Ti~DFe~lc~ 156 (193)
T PF07021_consen 136 EWYDTPNIH--------LCTIKDFEDLCR 156 (193)
T ss_pred cccCCCCcc--------cccHHHHHHHHH
Confidence 666544332 345678888876
No 115
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=99.08 E-value=4.7e-10 Score=108.12 Aligned_cols=180 Identities=21% Similarity=0.316 Sum_probs=107.5
Q ss_pred cccCCCcccccCHHHHHHHHHHcCCCCCCEEEEEcCcccHHHHHHHH---------cCCeEEEEeCCHHHHHHHHHHhhc
Q 018261 30 FHKSKGQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLE---------AGKMVIAVELDSRMVLELQRRFQS 100 (359)
Q Consensus 30 ~~k~~GQ~fl~d~~v~~~iv~~~~~~~~~~VLDIGcGtG~lt~~La~---------~~~~V~avDid~~~i~~a~~~~~~ 100 (359)
-+|+.||.| ++..+++.|++.+...++.+|+|.+||+|.+...+.+ ...+++|+|+++.++..++.++.-
T Consensus 21 ~~k~~G~~~-TP~~i~~l~~~~~~~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l 99 (311)
T PF02384_consen 21 SRKKLGQFY-TPREIVDLMVKLLNPKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLL 99 (311)
T ss_dssp TTTSCGGC----HHHHHHHHHHHTT-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHH
T ss_pred hccccceee-hHHHHHHHHHhhhhccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhh
Confidence 356788765 9999999999999888888999999999999888776 247899999999999999887654
Q ss_pred CCCCC-CeEEEEccccCCCC----CCCcccccccccccc---hHHHHHH---Hhc-CchhhHHHHHHHHHHHHHHhccCC
Q 018261 101 TPYSN-RLKVIQGDVLKTDL----PYFDICVANIPYQIS---SPLTFKL---LFH-QPAFRCAIIMFQKEFAMRLVAQPG 168 (359)
Q Consensus 101 ~~~~~-~v~~i~~D~~~~~l----~~fD~VvsNlPy~i~---s~ii~~l---l~~-~~~~~~~~~~~qkE~a~Rlv~kpG 168 (359)
++... +..+.++|.+..+. ..||+|++|+||... .+....- ... .+....-...++. +.+ .+++|
T Consensus 100 ~~~~~~~~~i~~~d~l~~~~~~~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~--~l~-~Lk~~ 176 (311)
T PF02384_consen 100 HGIDNSNINIIQGDSLENDKFIKNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEH--ALS-LLKPG 176 (311)
T ss_dssp TTHHCBGCEEEES-TTTSHSCTST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHH--HHH-TEEEE
T ss_pred hccccccccccccccccccccccccccccccCCCCccccccccccccccccccccCCCccchhhhhHHH--HHh-hcccc
Confidence 44222 35689999876443 369999999999865 1111000 000 0111111222333 223 57888
Q ss_pred CeeEEeecc--h-h-hhHHh----------hhhhhccCCCCccCCCCcceeEEEEeeCCC
Q 018261 169 DKLYCRLSV--N-T-QLHAR----------VSHLLKVGKNNFRPPPKVDSSVVRIEPRKP 214 (359)
Q Consensus 169 g~~y~~lsv--~-~-q~~~~----------v~~l~~v~~~~F~P~P~V~S~vv~l~~~~~ 214 (359)
|.+...++- . . ..... +..+..+|.+.|.+ -.|.++++-+.+..+
T Consensus 177 G~~~~Ilp~~~L~~~~~~~~iR~~ll~~~~i~aVI~Lp~~~F~~-t~v~t~ilil~k~~~ 235 (311)
T PF02384_consen 177 GRAAIILPNGFLFSSSSEKKIRKYLLENGYIEAVISLPSNLFKP-TGVPTSILILNKKKP 235 (311)
T ss_dssp EEEEEEEEHHHHHGSTHHHHHHHHHHHHEEEEEEEE--TTSSSS-SSS-EEEEEEEESSS
T ss_pred cceeEEecchhhhccchHHHHHHHHHhhchhhEEeecccceecc-cCcCceEEEEeeccc
Confidence 886444421 1 1 11111 22334678888888 788888888877653
No 116
>PLN03075 nicotianamine synthase; Provisional
Probab=99.07 E-value=2.6e-09 Score=101.93 Aligned_cols=148 Identities=18% Similarity=0.184 Sum_probs=95.4
Q ss_pred HHHHcCCCCCCEEEEEcCcccHHHHHHHH--c--CCeEEEEeCCHHHHHHHHHHhhc-CCCCCCeEEEEccccCCC--CC
Q 018261 48 IVQKAGIKSTDVILEIGPGTGNLTKKLLE--A--GKMVIAVELDSRMVLELQRRFQS-TPYSNRLKVIQGDVLKTD--LP 120 (359)
Q Consensus 48 iv~~~~~~~~~~VLDIGcGtG~lt~~La~--~--~~~V~avDid~~~i~~a~~~~~~-~~~~~~v~~i~~D~~~~~--l~ 120 (359)
++......++.+|+|||||.|.+|..++. . +.+++++|+|+.+++.|++.+.. .++..+++|..+|+.+.. +.
T Consensus 115 ~L~~~~~~~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~l~ 194 (296)
T PLN03075 115 LLSQHVNGVPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTESLK 194 (296)
T ss_pred HHHHhhcCCCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcccccC
Confidence 33334444778999999998876655443 2 46899999999999999999854 566668999999998764 35
Q ss_pred CCcccccccccccchHHHHHHHhcCchhhHHHHHHHHHHHHHHhccCCCeeEEeec-chhhhHHh-hhh----hhccCCC
Q 018261 121 YFDICVANIPYQISSPLTFKLLFHQPAFRCAIIMFQKEFAMRLVAQPGDKLYCRLS-VNTQLHAR-VSH----LLKVGKN 194 (359)
Q Consensus 121 ~fD~VvsNlPy~i~s~ii~~ll~~~~~~~~~~~~~qkE~a~Rlv~kpGg~~y~~ls-v~~q~~~~-v~~----l~~v~~~ 194 (359)
.||+|++..-.++..+--.+++ +.+++ .++|||.++.... ...+..+. +.. -+++ -.
T Consensus 195 ~FDlVF~~ALi~~dk~~k~~vL--------------~~l~~--~LkPGG~Lvlr~~~G~r~~LYp~v~~~~~~gf~~-~~ 257 (296)
T PLN03075 195 EYDVVFLAALVGMDKEEKVKVI--------------EHLGK--HMAPGALLMLRSAHGARAFLYPVVDPCDLRGFEV-LS 257 (296)
T ss_pred CcCEEEEecccccccccHHHHH--------------HHHHH--hcCCCcEEEEecccchHhhcCCCCChhhCCCeEE-EE
Confidence 8999998743333211111122 23332 7899999876642 11222221 111 1111 24
Q ss_pred CccCCCCcceeEEEEeeC
Q 018261 195 NFRPPPKVDSSVVRIEPR 212 (359)
Q Consensus 195 ~F~P~P~V~S~vv~l~~~ 212 (359)
.|+|.++|..++|-+.++
T Consensus 258 ~~~P~~~v~Nsvi~~r~~ 275 (296)
T PLN03075 258 VFHPTDEVINSVIIARKP 275 (296)
T ss_pred EECCCCCceeeEEEEEee
Confidence 678999988888866654
No 117
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=99.07 E-value=6.3e-10 Score=107.62 Aligned_cols=82 Identities=17% Similarity=0.267 Sum_probs=65.6
Q ss_pred CCCEEEEEcCcccHHHHHHHHc--CCeEEEEeCCHHHHHHHHHHhhcC-CCCCCeEEEE-ccc---cC-C--CCCCCccc
Q 018261 56 STDVILEIGPGTGNLTKKLLEA--GKMVIAVELDSRMVLELQRRFQST-PYSNRLKVIQ-GDV---LK-T--DLPYFDIC 125 (359)
Q Consensus 56 ~~~~VLDIGcGtG~lt~~La~~--~~~V~avDid~~~i~~a~~~~~~~-~~~~~v~~i~-~D~---~~-~--~l~~fD~V 125 (359)
...+|||||||+|.+...|+.+ +.+++|+|+|+.+++.|++++..+ ++..+++++. .|. .. + ....||+|
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~~~~~~fDli 193 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIFKGIIHKNERFDAT 193 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhhhcccccCCceEEE
Confidence 4579999999999988888765 689999999999999999999988 5777888864 332 22 1 12379999
Q ss_pred ccccccccchHH
Q 018261 126 VANIPYQISSPL 137 (359)
Q Consensus 126 vsNlPy~i~s~i 137 (359)
+||+||+.+...
T Consensus 194 vcNPPf~~s~~e 205 (321)
T PRK11727 194 LCNPPFHASAAE 205 (321)
T ss_pred EeCCCCcCcchh
Confidence 999999987543
No 118
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=99.07 E-value=2e-09 Score=106.28 Aligned_cols=117 Identities=17% Similarity=0.253 Sum_probs=84.6
Q ss_pred HHHHcCCCCCCEEEEEcCcccHHHHHHHHc--CCeEEEEeCCHHHHHHHHHHhhcCCCCCCeEEEEccccCC----CCCC
Q 018261 48 IVQKAGIKSTDVILEIGPGTGNLTKKLLEA--GKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKT----DLPY 121 (359)
Q Consensus 48 iv~~~~~~~~~~VLDIGcGtG~lt~~La~~--~~~V~avDid~~~i~~a~~~~~~~~~~~~v~~i~~D~~~~----~l~~ 121 (359)
+++.+....+..+||||||+|.++..+|+. ...++|+|+++.++..|.+++...++. |+.++++|+..+ +...
T Consensus 114 ~~~~~~~~~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL~-NV~~i~~DA~~ll~~~~~~s 192 (390)
T PRK14121 114 FLDFISKNQEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNLK-NLLIINYDARLLLELLPSNS 192 (390)
T ss_pred HHHHhcCCCCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCC-cEEEEECCHHHhhhhCCCCc
Confidence 344444456679999999999999999987 478999999999999999988777654 899999998653 2237
Q ss_pred CcccccccccccchHHHHHHHhcCchhhHHHHHHHHHHHHHHhccCCCeeEEeec
Q 018261 122 FDICVANIPYQISSPLTFKLLFHQPAFRCAIIMFQKEFAMRLVAQPGDKLYCRLS 176 (359)
Q Consensus 122 fD~VvsNlPy~i~s~ii~~ll~~~~~~~~~~~~~qkE~a~Rlv~kpGg~~y~~ls 176 (359)
+|.|+.|.|..|.... |.......++ .+++ | +++|||.++....
T Consensus 193 ~D~I~lnFPdPW~Kkr------HRRlv~~~fL---~e~~-R-vLkpGG~l~l~TD 236 (390)
T PRK14121 193 VEKIFVHFPVPWDKKP------HRRVISEDFL---NEAL-R-VLKPGGTLELRTD 236 (390)
T ss_pred eeEEEEeCCCCccccc------hhhccHHHHH---HHHH-H-HcCCCcEEEEEEE
Confidence 9999999987774321 1000011111 3443 3 7899999876543
No 119
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=99.07 E-value=9.3e-10 Score=111.00 Aligned_cols=105 Identities=15% Similarity=0.209 Sum_probs=81.2
Q ss_pred cccccCCCcccccCHHHH----HHHHHHcCCCCCCEEEEEcCcccHHHHHHHHcCCeEEEEeCCHHHHHHHHHHhhcCCC
Q 018261 28 ISFHKSKGQHILKNPLLV----ESIVQKAGIKSTDVILEIGPGTGNLTKKLLEAGKMVIAVELDSRMVLELQRRFQSTPY 103 (359)
Q Consensus 28 ~~~~k~~GQ~fl~d~~v~----~~iv~~~~~~~~~~VLDIGcGtG~lt~~La~~~~~V~avDid~~~i~~a~~~~~~~~~ 103 (359)
.++.-+.+..|-.++... +.+.+.+.+.++.+|||+|||+|.++..|++.+.+|+|+|+++.|++.|++++..+++
T Consensus 260 ~~~~~~~~~F~Q~N~~~~~~l~~~~~~~l~~~~~~~vLDl~cG~G~~sl~la~~~~~V~~vE~~~~av~~a~~n~~~~~~ 339 (431)
T TIGR00479 260 LSFSLSARDFFQVNSGQNEKLVDRALEALELQGEELVVDAYCGVGTFTLPLAKQAKSVVGIEVVPESVEKAQQNAELNGI 339 (431)
T ss_pred EEEEECCCceeecCHHHHHHHHHHHHHHhccCCCCEEEEcCCCcCHHHHHHHHhCCEEEEEEcCHHHHHHHHHHHHHhCC
Confidence 344444444444555444 4555566667778999999999999999999888999999999999999999987765
Q ss_pred CCCeEEEEccccCC----CC--CCCccccccccccc
Q 018261 104 SNRLKVIQGDVLKT----DL--PYFDICVANIPYQI 133 (359)
Q Consensus 104 ~~~v~~i~~D~~~~----~l--~~fD~VvsNlPy~i 133 (359)
.+++++++|+.+. .. ..||+|+.++|+.-
T Consensus 340 -~nv~~~~~d~~~~l~~~~~~~~~~D~vi~dPPr~G 374 (431)
T TIGR00479 340 -ANVEFLAGTLETVLPKQPWAGQIPDVLLLDPPRKG 374 (431)
T ss_pred -CceEEEeCCHHHHHHHHHhcCCCCCEEEECcCCCC
Confidence 3899999998752 11 25899999999753
No 120
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=99.06 E-value=2.7e-10 Score=101.59 Aligned_cols=96 Identities=24% Similarity=0.349 Sum_probs=75.3
Q ss_pred ccCHHHHHHHHHHcCCCCCCEEEEEcCcccHHHHHHHHcC--Ce---------EEEEeCCHHHHHHHHHHhhcCCCCCCe
Q 018261 39 LKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEAG--KM---------VIAVELDSRMVLELQRRFQSTPYSNRL 107 (359)
Q Consensus 39 l~d~~v~~~iv~~~~~~~~~~VLDIGcGtG~lt~~La~~~--~~---------V~avDid~~~i~~a~~~~~~~~~~~~v 107 (359)
-.++.++..|+..+.+.+++.|||.-||+|++.++.+..+ .. ++|+|+|++++..+++|+...++...+
T Consensus 11 ~L~~~lA~~ll~la~~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i 90 (179)
T PF01170_consen 11 PLRPTLAAALLNLAGWRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYI 90 (179)
T ss_dssp SS-HHHHHHHHHHTT--TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGE
T ss_pred CCCHHHHHHHHHHhCCCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCce
Confidence 4578999999999999999999999999999998876553 33 789999999999999999988877789
Q ss_pred EEEEccccCCCCC--CCcccccccccccc
Q 018261 108 KVIQGDVLKTDLP--YFDICVANIPYQIS 134 (359)
Q Consensus 108 ~~i~~D~~~~~l~--~fD~VvsNlPy~i~ 134 (359)
.+.+.|+.++++. .+|.||+|+||..-
T Consensus 91 ~~~~~D~~~l~~~~~~~d~IvtnPPyG~r 119 (179)
T PF01170_consen 91 DFIQWDARELPLPDGSVDAIVTNPPYGRR 119 (179)
T ss_dssp EEEE--GGGGGGTTSBSCEEEEE--STTS
T ss_pred EEEecchhhcccccCCCCEEEECcchhhh
Confidence 9999999998842 79999999999865
No 121
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=99.06 E-value=1.4e-11 Score=98.49 Aligned_cols=73 Identities=27% Similarity=0.411 Sum_probs=46.4
Q ss_pred EEEcCcccHHHHHHHHc--CCeEEEEeCCHHHHHHHHHHhhcCCCCCCeEEEEcc---ccCCCCC-CCcccccccccccc
Q 018261 61 LEIGPGTGNLTKKLLEA--GKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGD---VLKTDLP-YFDICVANIPYQIS 134 (359)
Q Consensus 61 LDIGcGtG~lt~~La~~--~~~V~avDid~~~i~~a~~~~~~~~~~~~v~~i~~D---~~~~~l~-~fD~VvsNlPy~i~ 134 (359)
||||||+|.++..+++. ..+++++|+|+.|++.+++++...... +...+..+ ..+...+ .||+|+++..+++.
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~~l 79 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGND-NFERLRFDVLDLFDYDPPESFDLVVASNVLHHL 79 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT----EEEEE--SSS---CCC----SEEEEE-TTS--
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCc-ceeEEEeecCChhhcccccccceehhhhhHhhh
Confidence 79999999999999988 689999999999999888888765421 33334333 3333333 89999987655544
No 122
>PRK06922 hypothetical protein; Provisional
Probab=99.05 E-value=1.2e-09 Score=113.37 Aligned_cols=80 Identities=19% Similarity=0.330 Sum_probs=65.4
Q ss_pred cCCCCCCEEEEEcCcccHHHHHHHHc--CCeEEEEeCCHHHHHHHHHHhhcCCCCCCeEEEEccccCCC--C--CCCccc
Q 018261 52 AGIKSTDVILEIGPGTGNLTKKLLEA--GKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTD--L--PYFDIC 125 (359)
Q Consensus 52 ~~~~~~~~VLDIGcGtG~lt~~La~~--~~~V~avDid~~~i~~a~~~~~~~~~~~~v~~i~~D~~~~~--l--~~fD~V 125 (359)
+...++.+|||||||+|.++..+++. +.+|+|+|+|+.|++.|+++....+ .++.++++|+.+++ + .+||+|
T Consensus 414 ~d~~~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~g--~~ie~I~gDa~dLp~~fedeSFDvV 491 (677)
T PRK06922 414 LDYIKGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNEG--RSWNVIKGDAINLSSSFEKESVDTI 491 (677)
T ss_pred hhhcCCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcC--CCeEEEEcchHhCccccCCCCEEEE
Confidence 34456889999999999999988875 5799999999999999998875543 26888999998755 3 379999
Q ss_pred cccccccc
Q 018261 126 VANIPYQI 133 (359)
Q Consensus 126 vsNlPy~i 133 (359)
++|.++++
T Consensus 492 Vsn~vLH~ 499 (677)
T PRK06922 492 VYSSILHE 499 (677)
T ss_pred EEchHHHh
Confidence 99987663
No 123
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=99.05 E-value=3.9e-09 Score=96.78 Aligned_cols=82 Identities=17% Similarity=0.097 Sum_probs=61.7
Q ss_pred HHHHcCCCCCCEEEEEcCcccHHHHHHHHcCCeEEEEeCCHHHHHHHHHHhhcC-----------CCCCCeEEEEccccC
Q 018261 48 IVQKAGIKSTDVILEIGPGTGNLTKKLLEAGKMVIAVELDSRMVLELQRRFQST-----------PYSNRLKVIQGDVLK 116 (359)
Q Consensus 48 iv~~~~~~~~~~VLDIGcGtG~lt~~La~~~~~V~avDid~~~i~~a~~~~~~~-----------~~~~~v~~i~~D~~~ 116 (359)
.+..+.+.++.+|||+|||.|..+..|+++|.+|+|||+|+.+++.+.+..... .-..+++++++|+++
T Consensus 26 ~~~~l~~~~~~rvLd~GCG~G~da~~LA~~G~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~ 105 (213)
T TIGR03840 26 HWPALGLPAGARVFVPLCGKSLDLAWLAEQGHRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFA 105 (213)
T ss_pred HHHhhCCCCCCeEEEeCCCchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCC
Confidence 444444456789999999999999999999999999999999999864432110 001368999999998
Q ss_pred CCC---CCCccccccc
Q 018261 117 TDL---PYFDICVANI 129 (359)
Q Consensus 117 ~~l---~~fD~VvsNl 129 (359)
++. +.||.|+...
T Consensus 106 ~~~~~~~~fD~i~D~~ 121 (213)
T TIGR03840 106 LTAADLGPVDAVYDRA 121 (213)
T ss_pred CCcccCCCcCEEEech
Confidence 763 3688777543
No 124
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=99.04 E-value=3.1e-09 Score=102.80 Aligned_cols=87 Identities=22% Similarity=0.192 Sum_probs=68.2
Q ss_pred HHHHHHHHHcCC---CCCCEEEEEcCcccHHHHHHHHcCCeEEEEeCCHHHHHHHHHHhhcCCC----CCCeEEEEcccc
Q 018261 43 LLVESIVQKAGI---KSTDVILEIGPGTGNLTKKLLEAGKMVIAVELDSRMVLELQRRFQSTPY----SNRLKVIQGDVL 115 (359)
Q Consensus 43 ~v~~~iv~~~~~---~~~~~VLDIGcGtG~lt~~La~~~~~V~avDid~~~i~~a~~~~~~~~~----~~~v~~i~~D~~ 115 (359)
.+++.+++.+.. .++.+|||||||+|.++..|++.+.+|+|+|+|+.|++.++++...... ..++++..+|+.
T Consensus 128 ~~v~~~l~~l~~~~~~~~~~VLDlGcGtG~~a~~la~~g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~ 207 (315)
T PLN02585 128 QTVEKVLLWLAEDGSLAGVTVCDAGCGTGSLAIPLALEGAIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLE 207 (315)
T ss_pred HHHHHHHHHHHhcCCCCCCEEEEecCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchh
Confidence 455666666543 2578999999999999999999999999999999999999998764310 126788899987
Q ss_pred CCCCCCCcccccccc
Q 018261 116 KTDLPYFDICVANIP 130 (359)
Q Consensus 116 ~~~l~~fD~VvsNlP 130 (359)
.++ ..||+|+++..
T Consensus 208 ~l~-~~fD~Vv~~~v 221 (315)
T PLN02585 208 SLS-GKYDTVTCLDV 221 (315)
T ss_pred hcC-CCcCEEEEcCE
Confidence 653 57999988653
No 125
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=99.03 E-value=3.3e-09 Score=100.56 Aligned_cols=91 Identities=20% Similarity=0.350 Sum_probs=69.8
Q ss_pred CCCCEEEEEcCcccHHHHHHHHcC-----CeEEEEeCCHHHHHHHHHHhhcCCCCCCeEEEEccccCCCCC--CCccccc
Q 018261 55 KSTDVILEIGPGTGNLTKKLLEAG-----KMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTDLP--YFDICVA 127 (359)
Q Consensus 55 ~~~~~VLDIGcGtG~lt~~La~~~-----~~V~avDid~~~i~~a~~~~~~~~~~~~v~~i~~D~~~~~l~--~fD~Vvs 127 (359)
....+|||||||+|.++..|++.. ..|+|+|+|+.|+..|+++. + ++.++.+|+.+++++ .||+|++
T Consensus 84 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~---~---~~~~~~~d~~~lp~~~~sfD~I~~ 157 (272)
T PRK11088 84 EKATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRY---P---QVTFCVASSHRLPFADQSLDAIIR 157 (272)
T ss_pred CCCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhC---C---CCeEEEeecccCCCcCCceeEEEE
Confidence 355789999999999999998652 37999999999999998764 2 688999999887764 7999987
Q ss_pred ccccccchHHHHHHHhcCchhhHHHHHHHHHHHHHHhccCCCeeEEee
Q 018261 128 NIPYQISSPLTFKLLFHQPAFRCAIIMFQKEFAMRLVAQPGDKLYCRL 175 (359)
Q Consensus 128 NlPy~i~s~ii~~ll~~~~~~~~~~~~~qkE~a~Rlv~kpGg~~y~~l 175 (359)
+.. +. . -+|+. | +++|||.++...
T Consensus 158 ~~~-----~~----------~-------~~e~~-r-vLkpgG~li~~~ 181 (272)
T PRK11088 158 IYA-----PC----------K-------AEELA-R-VVKPGGIVITVT 181 (272)
T ss_pred ecC-----CC----------C-------HHHHH-h-hccCCCEEEEEe
Confidence 531 10 0 04554 3 889999987654
No 126
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=99.03 E-value=2.5e-09 Score=97.19 Aligned_cols=112 Identities=21% Similarity=0.323 Sum_probs=83.1
Q ss_pred CHHHHHHHHHHcCCCCCCEEEEEcCcccHHHHHHHHcC---CeEEEEeCCHHHHHHHHHHhhcCCCCCCeEEEEccccCC
Q 018261 41 NPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEAG---KMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKT 117 (359)
Q Consensus 41 d~~v~~~iv~~~~~~~~~~VLDIGcGtG~lt~~La~~~---~~V~avDid~~~i~~a~~~~~~~~~~~~v~~i~~D~~~~ 117 (359)
+..+...+++.+...++.+|||+|||+|.++..+++.. .+++++|+++.++..++++... ..+++++++|+.+.
T Consensus 24 ~~~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~~---~~~i~~~~~d~~~~ 100 (223)
T TIGR01934 24 HRLWRRRAVKLIGVFKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSEL---PLNIEFIQADAEAL 100 (223)
T ss_pred HHHHHHHHHHHhccCCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhcc---CCCceEEecchhcC
Confidence 35666777777777788999999999999999998874 4899999999999999998752 23789999999886
Q ss_pred CCC--CCcccccccccccchHHHHHHHhcCchhhHHHHHHHHHHHHHHhccCCCeeE
Q 018261 118 DLP--YFDICVANIPYQISSPLTFKLLFHQPAFRCAIIMFQKEFAMRLVAQPGDKLY 172 (359)
Q Consensus 118 ~l~--~fD~VvsNlPy~i~s~ii~~ll~~~~~~~~~~~~~qkE~a~Rlv~kpGg~~y 172 (359)
+.+ .||+|+++..++.. ..+...+ +++. .+++|||.++
T Consensus 101 ~~~~~~~D~i~~~~~~~~~-----------~~~~~~l----~~~~--~~L~~gG~l~ 140 (223)
T TIGR01934 101 PFEDNSFDAVTIAFGLRNV-----------TDIQKAL----REMY--RVLKPGGRLV 140 (223)
T ss_pred CCCCCcEEEEEEeeeeCCc-----------ccHHHHH----HHHH--HHcCCCcEEE
Confidence 643 69999886543322 2222222 3333 2779999876
No 127
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=99.03 E-value=8.9e-10 Score=94.77 Aligned_cols=104 Identities=22% Similarity=0.280 Sum_probs=70.5
Q ss_pred HHHHHHHcC-CCCCCEEEEEcCcccHHHHHHHHcCCeEEEEeCCHHHHHHHHHHhhcCCCCCCeEEEEccccC--CCCCC
Q 018261 45 VESIVQKAG-IKSTDVILEIGPGTGNLTKKLLEAGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLK--TDLPY 121 (359)
Q Consensus 45 ~~~iv~~~~-~~~~~~VLDIGcGtG~lt~~La~~~~~V~avDid~~~i~~a~~~~~~~~~~~~v~~i~~D~~~--~~l~~ 121 (359)
.+.+..... ..++.+|||||||+|.++..|++.+.+|+++|+++.++.. . ++.....+... .+...
T Consensus 10 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~g~D~~~~~~~~------~-----~~~~~~~~~~~~~~~~~~ 78 (161)
T PF13489_consen 10 ADLLERLLPRLKPGKRVLDIGCGTGSFLRALAKRGFEVTGVDISPQMIEK------R-----NVVFDNFDAQDPPFPDGS 78 (161)
T ss_dssp HHHHHHHHTCTTTTSEEEEESSTTSHHHHHHHHTTSEEEEEESSHHHHHH------T-----TSEEEEEECHTHHCHSSS
T ss_pred HHHHHHHhcccCCCCEEEEEcCCCCHHHHHHHHhCCEEEEEECCHHHHhh------h-----hhhhhhhhhhhhhccccc
Confidence 333433443 5678899999999999999999889999999999999888 1 23333332222 22347
Q ss_pred CcccccccccccchHHHHHHHhcCchhhHHHHHHHHHHHHHHhccCCCeeEEeec
Q 018261 122 FDICVANIPYQISSPLTFKLLFHQPAFRCAIIMFQKEFAMRLVAQPGDKLYCRLS 176 (359)
Q Consensus 122 fD~VvsNlPy~i~s~ii~~ll~~~~~~~~~~~~~qkE~a~Rlv~kpGg~~y~~ls 176 (359)
||+|+++--+ +|.+++...+ +++.+ +++|||.++....
T Consensus 79 fD~i~~~~~l-----------~~~~d~~~~l----~~l~~--~LkpgG~l~~~~~ 116 (161)
T PF13489_consen 79 FDLIICNDVL-----------EHLPDPEEFL----KELSR--LLKPGGYLVISDP 116 (161)
T ss_dssp EEEEEEESSG-----------GGSSHHHHHH----HHHHH--CEEEEEEEEEEEE
T ss_pred hhhHhhHHHH-----------hhcccHHHHH----HHHHH--hcCCCCEEEEEEc
Confidence 9999997643 3434333333 44433 8899998876543
No 128
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=99.02 E-value=2.3e-09 Score=103.49 Aligned_cols=97 Identities=24% Similarity=0.287 Sum_probs=87.0
Q ss_pred ccCHHHHHHHHHHcCCCCCCEEEEEcCcccHHHHHHHHcCCeEEEEeCCHHHHHHHHHHhhcCCCCCCeEEEEc-cccCC
Q 018261 39 LKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEAGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQG-DVLKT 117 (359)
Q Consensus 39 l~d~~v~~~iv~~~~~~~~~~VLDIGcGtG~lt~~La~~~~~V~avDid~~~i~~a~~~~~~~~~~~~v~~i~~-D~~~~ 117 (359)
-.+|.+++.+++.+.+.+|+.|||.=||||.+...+.-.|.+|+|+|+|.+|+.-++.|+..+++. ...++.. |+.++
T Consensus 180 s~~P~lAR~mVNLa~v~~G~~vlDPFcGTGgiLiEagl~G~~viG~Did~~mv~gak~Nl~~y~i~-~~~~~~~~Da~~l 258 (347)
T COG1041 180 SMDPRLARAMVNLARVKRGELVLDPFCGTGGILIEAGLMGARVIGSDIDERMVRGAKINLEYYGIE-DYPVLKVLDATNL 258 (347)
T ss_pred CcCHHHHHHHHHHhccccCCEeecCcCCccHHHHhhhhcCceEeecchHHHHHhhhhhhhhhhCcC-ceeEEEecccccC
Confidence 358999999999999999999999999999999998878999999999999999999999988754 5656666 99999
Q ss_pred CCCC--CcccccccccccchH
Q 018261 118 DLPY--FDICVANIPYQISSP 136 (359)
Q Consensus 118 ~l~~--fD~VvsNlPy~i~s~ 136 (359)
+++. +|.|++.+||..++-
T Consensus 259 pl~~~~vdaIatDPPYGrst~ 279 (347)
T COG1041 259 PLRDNSVDAIATDPPYGRSTK 279 (347)
T ss_pred CCCCCccceEEecCCCCcccc
Confidence 9884 999999999998763
No 129
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=99.01 E-value=3.2e-09 Score=99.12 Aligned_cols=129 Identities=24% Similarity=0.370 Sum_probs=94.8
Q ss_pred cCHHHHHHHHHHcCCCCCCEEEEEcCcccHHHHHHHHc---CCeEEEEeCCHHHHHHHHHHhhcCCCCCCeEEEEccccC
Q 018261 40 KNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEA---GKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLK 116 (359)
Q Consensus 40 ~d~~v~~~iv~~~~~~~~~~VLDIGcGtG~lt~~La~~---~~~V~avDid~~~i~~a~~~~~~~~~~~~v~~i~~D~~~ 116 (359)
+.+.=+..|+..+++.+|++|||.|+|+|.+|..|++. ..+|+.+|+.++.++.|++++..+++.+++++.+.|+.+
T Consensus 24 iYpkD~~~I~~~l~i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~ 103 (247)
T PF08704_consen 24 IYPKDISYILMRLDIRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVCE 103 (247)
T ss_dssp --HHHHHHHHHHTT--TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GGC
T ss_pred eeCchHHHHHHHcCCCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEecceec
Confidence 35666788999999999999999999999999999986 379999999999999999999999988899999999975
Q ss_pred CCC-----CCCcccccccccccchHHHHHHHhcCchhhHHHHHHHHHHHHHHhc-cCCCeeEEeecchhhhHHhhhhhhc
Q 018261 117 TDL-----PYFDICVANIPYQISSPLTFKLLFHQPAFRCAIIMFQKEFAMRLVA-QPGDKLYCRLSVNTQLHARVSHLLK 190 (359)
Q Consensus 117 ~~l-----~~fD~VvsNlPy~i~s~ii~~ll~~~~~~~~~~~~~qkE~a~Rlv~-kpGg~~y~~lsv~~q~~~~v~~l~~ 190 (359)
-.+ ..+|.|+..+|--|. ++ +-+.+ ++ +|||.+.+-.....|....+..+..
T Consensus 104 ~g~~~~~~~~~DavfLDlp~Pw~----------------~i-----~~~~~-~L~~~gG~i~~fsP~ieQv~~~~~~L~~ 161 (247)
T PF08704_consen 104 EGFDEELESDFDAVFLDLPDPWE----------------AI-----PHAKR-ALKKPGGRICCFSPCIEQVQKTVEALRE 161 (247)
T ss_dssp G--STT-TTSEEEEEEESSSGGG----------------GH-----HHHHH-HE-EEEEEEEEEESSHHHHHHHHHHHHH
T ss_pred ccccccccCcccEEEEeCCCHHH----------------HH-----HHHHH-HHhcCCceEEEECCCHHHHHHHHHHHHH
Confidence 322 268999999885443 11 11223 56 7999876656666677666666655
No 130
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=98.99 E-value=3.4e-09 Score=98.48 Aligned_cols=92 Identities=18% Similarity=0.096 Sum_probs=73.2
Q ss_pred ccCHHHHHHHHHHcCCCCCCEEEEEcCcccHHHHHHHHc---CCeEEEEeCCHHHHHHHHHHhhcCCCCCCeEEEEcccc
Q 018261 39 LKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEA---GKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVL 115 (359)
Q Consensus 39 l~d~~v~~~iv~~~~~~~~~~VLDIGcGtG~lt~~La~~---~~~V~avDid~~~i~~a~~~~~~~~~~~~v~~i~~D~~ 115 (359)
.+.+...+.+...+...+..+|||||||+|+-+..++.. ..+|+++|+++.+++.|++++...++.++++++.+|+.
T Consensus 51 ~v~~~~g~~L~~l~~~~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~ 130 (234)
T PLN02781 51 EVPVDEGLFLSMLVKIMNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDAL 130 (234)
T ss_pred ccCHHHHHHHHHHHHHhCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHH
Confidence 445554444444455567789999999999988888764 46999999999999999999999888788999999997
Q ss_pred CCC--------CCCCcccccccc
Q 018261 116 KTD--------LPYFDICVANIP 130 (359)
Q Consensus 116 ~~~--------l~~fD~VvsNlP 130 (359)
+.- .+.||+|+.+.+
T Consensus 131 ~~L~~l~~~~~~~~fD~VfiDa~ 153 (234)
T PLN02781 131 SALDQLLNNDPKPEFDFAFVDAD 153 (234)
T ss_pred HHHHHHHhCCCCCCCCEEEECCC
Confidence 641 137999998753
No 131
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=98.99 E-value=2.4e-09 Score=92.85 Aligned_cols=94 Identities=27% Similarity=0.538 Sum_probs=81.8
Q ss_pred cCCCcccccCHHHHHHHHHHcCCCCCCEEEEEcCcccHHHHHHHHcC---CeEEEEeCCHHHHHHHHHHhhcCCCCCCeE
Q 018261 32 KSKGQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEAG---KMVIAVELDSRMVLELQRRFQSTPYSNRLK 108 (359)
Q Consensus 32 k~~GQ~fl~d~~v~~~iv~~~~~~~~~~VLDIGcGtG~lt~~La~~~---~~V~avDid~~~i~~a~~~~~~~~~~~~v~ 108 (359)
+..|.-.-+++.++++|+...++..+.-|||+|+|||.+|.++++++ ..++++|.|++++.++.+... .++
T Consensus 24 rtVGaI~PsSs~lA~~M~s~I~pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~p------~~~ 97 (194)
T COG3963 24 RTVGAILPSSSILARKMASVIDPESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLYP------GVN 97 (194)
T ss_pred ceeeeecCCcHHHHHHHHhccCcccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhCC------Ccc
Confidence 55777777889999999999999999999999999999999999986 579999999999999998864 466
Q ss_pred EEEccccCCC--C-----CCCccccccccc
Q 018261 109 VIQGDVLKTD--L-----PYFDICVANIPY 131 (359)
Q Consensus 109 ~i~~D~~~~~--l-----~~fD~VvsNlPy 131 (359)
+++||+..+. + +.||.|||.+|+
T Consensus 98 ii~gda~~l~~~l~e~~gq~~D~viS~lPl 127 (194)
T COG3963 98 IINGDAFDLRTTLGEHKGQFFDSVISGLPL 127 (194)
T ss_pred ccccchhhHHHHHhhcCCCeeeeEEecccc
Confidence 9999998765 2 369999999885
No 132
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=98.99 E-value=2.5e-09 Score=97.40 Aligned_cols=70 Identities=21% Similarity=0.358 Sum_probs=58.9
Q ss_pred CCCCCEEEEEcCcccHHHHHHHHc--CCeEEEEeCCHHHHHHHHHHhhcCCCCCCeEEEEccccCCCCC--CCccccccc
Q 018261 54 IKSTDVILEIGPGTGNLTKKLLEA--GKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTDLP--YFDICVANI 129 (359)
Q Consensus 54 ~~~~~~VLDIGcGtG~lt~~La~~--~~~V~avDid~~~i~~a~~~~~~~~~~~~v~~i~~D~~~~~l~--~fD~VvsNl 129 (359)
+.++.+|||||||+|.++..|++. +.+|+|||+|+.|++.|+++.. ++.++++|+.+ +++ .||+|+++.
T Consensus 41 ~~~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~~------~~~~~~~d~~~-~~~~~sfD~V~~~~ 113 (204)
T TIGR03587 41 LPKIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYLP------NINIIQGSLFD-PFKDNFFDLVLTKG 113 (204)
T ss_pred cCCCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhCC------CCcEEEeeccC-CCCCCCEEEEEECC
Confidence 356779999999999999999886 5899999999999999998642 56788999887 433 799999876
Q ss_pred c
Q 018261 130 P 130 (359)
Q Consensus 130 P 130 (359)
.
T Consensus 114 v 114 (204)
T TIGR03587 114 V 114 (204)
T ss_pred h
Confidence 4
No 133
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=98.98 E-value=1.1e-08 Score=94.17 Aligned_cols=80 Identities=19% Similarity=0.109 Sum_probs=60.4
Q ss_pred HHHHcCCCCCCEEEEEcCcccHHHHHHHHcCCeEEEEeCCHHHHHHHHHHhhcC-----------CCCCCeEEEEccccC
Q 018261 48 IVQKAGIKSTDVILEIGPGTGNLTKKLLEAGKMVIAVELDSRMVLELQRRFQST-----------PYSNRLKVIQGDVLK 116 (359)
Q Consensus 48 iv~~~~~~~~~~VLDIGcGtG~lt~~La~~~~~V~avDid~~~i~~a~~~~~~~-----------~~~~~v~~i~~D~~~ 116 (359)
.+..+.+.++.+|||+|||.|..+..|+++|.+|+|||+++.+++.+....... ....++++.++|+.+
T Consensus 29 ~~~~~~~~~~~rvL~~gCG~G~da~~LA~~G~~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~ 108 (218)
T PRK13255 29 YWPALALPAGSRVLVPLCGKSLDMLWLAEQGHEVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFA 108 (218)
T ss_pred HHHhhCCCCCCeEEEeCCCChHhHHHHHhCCCeEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccC
Confidence 444344556789999999999999999999999999999999999874322110 012478999999998
Q ss_pred CC---CCCCccccc
Q 018261 117 TD---LPYFDICVA 127 (359)
Q Consensus 117 ~~---l~~fD~Vvs 127 (359)
+. .+.||.|+.
T Consensus 109 l~~~~~~~fd~v~D 122 (218)
T PRK13255 109 LTAADLADVDAVYD 122 (218)
T ss_pred CCcccCCCeeEEEe
Confidence 74 346777764
No 134
>PTZ00146 fibrillarin; Provisional
Probab=98.95 E-value=5.8e-09 Score=99.26 Aligned_cols=85 Identities=22% Similarity=0.317 Sum_probs=63.5
Q ss_pred HHHHHHH---HHcCCCCCCEEEEEcCcccHHHHHHHHcC---CeEEEEeCCHHHHHHHHHHhhcCCCCCCeEEEEccccC
Q 018261 43 LLVESIV---QKAGIKSTDVILEIGPGTGNLTKKLLEAG---KMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLK 116 (359)
Q Consensus 43 ~v~~~iv---~~~~~~~~~~VLDIGcGtG~lt~~La~~~---~~V~avDid~~~i~~a~~~~~~~~~~~~v~~i~~D~~~ 116 (359)
.+...|+ +.+.+.++.+|||+|||+|.+|..+++.. .+|+|||++++|.+.+.+...... |+.++.+|+..
T Consensus 116 Klaa~i~~g~~~l~IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r~---NI~~I~~Da~~ 192 (293)
T PTZ00146 116 KLAAAIIGGVANIPIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKRP---NIVPIIEDARY 192 (293)
T ss_pred HHHHHHHCCcceeccCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhcC---CCEEEECCccC
Confidence 3444453 34567899999999999999999999873 689999999987655554443322 89999999864
Q ss_pred C-----CCCCCcccccccc
Q 018261 117 T-----DLPYFDICVANIP 130 (359)
Q Consensus 117 ~-----~l~~fD~VvsNlP 130 (359)
. ..+.||+|+++.+
T Consensus 193 p~~y~~~~~~vDvV~~Dva 211 (293)
T PTZ00146 193 PQKYRMLVPMVDVIFADVA 211 (293)
T ss_pred hhhhhcccCCCCEEEEeCC
Confidence 2 1347899999874
No 135
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=98.95 E-value=5.8e-09 Score=98.66 Aligned_cols=122 Identities=20% Similarity=0.283 Sum_probs=78.4
Q ss_pred ccccCHHHHHHHHHHc--------CCCCCCEEEEEcCcccH----HHHHHHHc-------CCeEEEEeCCHHHHHHHHHH
Q 018261 37 HILKNPLLVESIVQKA--------GIKSTDVILEIGPGTGN----LTKKLLEA-------GKMVIAVELDSRMVLELQRR 97 (359)
Q Consensus 37 ~fl~d~~v~~~iv~~~--------~~~~~~~VLDIGcGtG~----lt~~La~~-------~~~V~avDid~~~i~~a~~~ 97 (359)
.|+.++...+.+.+.+ ...++.+|+|+|||||. ++..|++. ..+|+|+|+|+.|++.|++.
T Consensus 72 ~FfR~~~~~~~l~~~vlp~l~~~~~~~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~ 151 (264)
T smart00138 72 RFFRESKHFEALEEKVLPLLIASRRHGRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAG 151 (264)
T ss_pred cccCCcHHHHHHHHHHhHHHHHhcCCCCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcC
Confidence 4666665555544332 23345799999999995 55555553 35899999999999999985
Q ss_pred hhc------C--------------------CCCCCeEEEEccccCCCC--CCCccccccc-ccccchHHHHHHHhcCchh
Q 018261 98 FQS------T--------------------PYSNRLKVIQGDVLKTDL--PYFDICVANI-PYQISSPLTFKLLFHQPAF 148 (359)
Q Consensus 98 ~~~------~--------------------~~~~~v~~i~~D~~~~~l--~~fD~VvsNl-Py~i~s~ii~~ll~~~~~~ 148 (359)
.-. . .+..+++|.++|+.+.++ ..||+|+|.- -.++..+....++
T Consensus 152 ~y~~~~~~~~~~~~~~~yf~~~~~~~~v~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crnvl~yf~~~~~~~~l------ 225 (264)
T smart00138 152 IYPERELEDLPKALLARYFSRVEDKYRVKPELKERVRFAKHNLLAESPPLGDFDLIFCRNVLIYFDEPTQRKLL------ 225 (264)
T ss_pred CCCHHHHhcCCHHHHhhhEEeCCCeEEEChHHhCcCEEeeccCCCCCCccCCCCEEEechhHHhCCHHHHHHHH------
Confidence 310 0 011368999999998664 3799999842 2222222222221
Q ss_pred hHHHHHHHHHHHHHHhccCCCeeEEe
Q 018261 149 RCAIIMFQKEFAMRLVAQPGDKLYCR 174 (359)
Q Consensus 149 ~~~~~~~qkE~a~Rlv~kpGg~~y~~ 174 (359)
+++++ +++|||.++..
T Consensus 226 --------~~l~~--~L~pGG~L~lg 241 (264)
T smart00138 226 --------NRFAE--ALKPGGYLFLG 241 (264)
T ss_pred --------HHHHH--HhCCCeEEEEE
Confidence 45543 78999998754
No 136
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=98.95 E-value=4.3e-09 Score=103.93 Aligned_cols=103 Identities=17% Similarity=0.216 Sum_probs=82.2
Q ss_pred cccccCCCcccccCHHHHHHHHHHc----CCCCCCEEEEEcCcccHHHHHHHHcCCeEEEEeCCHHHHHHHHHHhhcCCC
Q 018261 28 ISFHKSKGQHILKNPLLVESIVQKA----GIKSTDVILEIGPGTGNLTKKLLEAGKMVIAVELDSRMVLELQRRFQSTPY 103 (359)
Q Consensus 28 ~~~~k~~GQ~fl~d~~v~~~iv~~~----~~~~~~~VLDIGcGtG~lt~~La~~~~~V~avDid~~~i~~a~~~~~~~~~ 103 (359)
+.++-+.+-.|-.|+.+.+.+++.+ ... +.+|||++||+|.++..|++...+|+|||+++.+++.|++|+..+++
T Consensus 175 ~~~~~~~~sF~Q~N~~~~e~l~~~v~~~~~~~-~~~vLDl~~G~G~~sl~la~~~~~v~~vE~~~~ai~~a~~N~~~~~~ 253 (362)
T PRK05031 175 FIYRQVENSFTQPNAAVNEKMLEWALDATKGS-KGDLLELYCGNGNFTLALARNFRRVLATEISKPSVAAAQYNIAANGI 253 (362)
T ss_pred EEEEeCCCCeeccCHHHHHHHHHHHHHHhhcC-CCeEEEEeccccHHHHHHHhhCCEEEEEECCHHHHHHHHHHHHHhCC
Confidence 5666666767777877766666543 322 35799999999999999998888999999999999999999987776
Q ss_pred CCCeEEEEccccCCC--C---------------C-CCcccccccccc
Q 018261 104 SNRLKVIQGDVLKTD--L---------------P-YFDICVANIPYQ 132 (359)
Q Consensus 104 ~~~v~~i~~D~~~~~--l---------------~-~fD~VvsNlPy~ 132 (359)
. |++++++|+.++- + . .||+|+.++|+.
T Consensus 254 ~-~v~~~~~d~~~~l~~~~~~~~~~~~~~~~~~~~~~D~v~lDPPR~ 299 (362)
T PRK05031 254 D-NVQIIRMSAEEFTQAMNGVREFNRLKGIDLKSYNFSTIFVDPPRA 299 (362)
T ss_pred C-cEEEEECCHHHHHHHHhhcccccccccccccCCCCCEEEECCCCC
Confidence 4 8999999987631 1 1 489999999985
No 137
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=98.94 E-value=1.1e-08 Score=94.33 Aligned_cols=115 Identities=18% Similarity=0.260 Sum_probs=82.5
Q ss_pred CHHHHHHHHHHcCCCCCCEEEEEcCcccHHHHHHHHcCCeEEEEeCCHHHHHHHHHHhhcCCCCCCeEEEEccccCCC--
Q 018261 41 NPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEAGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTD-- 118 (359)
Q Consensus 41 d~~v~~~iv~~~~~~~~~~VLDIGcGtG~lt~~La~~~~~V~avDid~~~i~~a~~~~~~~~~~~~v~~i~~D~~~~~-- 118 (359)
++.-++.+...+...++.+|||||||+|.++..+++.+.+|+++|+++.++..+++++...+. ++.++.+|+.+..
T Consensus 33 ~~~~~~~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~ 110 (233)
T PRK05134 33 NPLRLNYIREHAGGLFGKRVLDVGCGGGILSESMARLGADVTGIDASEENIEVARLHALESGL--KIDYRQTTAEELAAE 110 (233)
T ss_pred hHHHHHHHHHhccCCCCCeEEEeCCCCCHHHHHHHHcCCeEEEEcCCHHHHHHHHHHHHHcCC--ceEEEecCHHHhhhh
Confidence 344455666666566788999999999999999998888999999999999999988765443 5788888887653
Q ss_pred -CCCCcccccccccccchHHHHHHHhcCchhhHHHHHHHHHHHHHHhccCCCeeEEe
Q 018261 119 -LPYFDICVANIPYQISSPLTFKLLFHQPAFRCAIIMFQKEFAMRLVAQPGDKLYCR 174 (359)
Q Consensus 119 -l~~fD~VvsNlPy~i~s~ii~~ll~~~~~~~~~~~~~qkE~a~Rlv~kpGg~~y~~ 174 (359)
...||+|+++.. +++.+.....+ +.+ .+ +++|||.++..
T Consensus 111 ~~~~fD~Ii~~~~-----------l~~~~~~~~~l----~~~-~~-~L~~gG~l~v~ 150 (233)
T PRK05134 111 HPGQFDVVTCMEM-----------LEHVPDPASFV----RAC-AK-LVKPGGLVFFS 150 (233)
T ss_pred cCCCccEEEEhhH-----------hhccCCHHHHH----HHH-HH-HcCCCcEEEEE
Confidence 247999988543 33333322222 233 23 67899987744
No 138
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=98.94 E-value=1.2e-08 Score=98.40 Aligned_cols=70 Identities=16% Similarity=0.239 Sum_probs=54.8
Q ss_pred HHHHHHHcCCCCCCEEEEEcCcccHHHHHHHHc---CCeEEEEeCCHHHHHHHHHHhhcCCCCCCeEEEEccccC
Q 018261 45 VESIVQKAGIKSTDVILEIGPGTGNLTKKLLEA---GKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLK 116 (359)
Q Consensus 45 ~~~iv~~~~~~~~~~VLDIGcGtG~lt~~La~~---~~~V~avDid~~~i~~a~~~~~~~~~~~~v~~i~~D~~~ 116 (359)
...|++.+ .++.+|||+|||+|..|..|++. +.+|++||+|+.|++.+++++......-++.++++|+.+
T Consensus 54 ~~~ia~~~--~~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~ 126 (301)
T TIGR03438 54 ADEIAAAT--GAGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQ 126 (301)
T ss_pred HHHHHHhh--CCCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccc
Confidence 34455444 45679999999999999999987 478999999999999999887542211257779999976
No 139
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=98.93 E-value=4e-09 Score=103.81 Aligned_cols=104 Identities=13% Similarity=0.130 Sum_probs=78.7
Q ss_pred cccccCCCcccccCHHHHHHH----HHHcCCCCCCEEEEEcCcccHHHHHHHHcCCeEEEEeCCHHHHHHHHHHhhcCCC
Q 018261 28 ISFHKSKGQHILKNPLLVESI----VQKAGIKSTDVILEIGPGTGNLTKKLLEAGKMVIAVELDSRMVLELQRRFQSTPY 103 (359)
Q Consensus 28 ~~~~k~~GQ~fl~d~~v~~~i----v~~~~~~~~~~VLDIGcGtG~lt~~La~~~~~V~avDid~~~i~~a~~~~~~~~~ 103 (359)
+.++...+..|-.|....+.+ ++.+...+ .+|||+|||+|.++..|++...+|+|||+++.+++.|++++..+++
T Consensus 166 ~~~~~~~~~F~Q~N~~~~~~l~~~v~~~~~~~~-~~vlDl~~G~G~~sl~la~~~~~v~~vE~~~~av~~a~~n~~~~~~ 244 (353)
T TIGR02143 166 FIYRQVENSFTQPNAAVNIKMLEWACEVTQGSK-GDLLELYCGNGNFSLALAQNFRRVLATEIAKPSVNAAQYNIAANNI 244 (353)
T ss_pred EEEEECCCCcccCCHHHHHHHHHHHHHHhhcCC-CcEEEEeccccHHHHHHHHhCCEEEEEECCHHHHHHHHHHHHHcCC
Confidence 455555555555665544444 44444323 4799999999999999998888999999999999999999988776
Q ss_pred CCCeEEEEccccCCCC-----------------C-CCccccccccccc
Q 018261 104 SNRLKVIQGDVLKTDL-----------------P-YFDICVANIPYQI 133 (359)
Q Consensus 104 ~~~v~~i~~D~~~~~l-----------------~-~fD~VvsNlPy~i 133 (359)
. +++++++|+.++.. . .||+|+.++|..-
T Consensus 245 ~-~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~lDPPR~G 291 (353)
T TIGR02143 245 D-NVQIIRMSAEEFTQAMNGVREFRRLKGIDLKSYNCSTIFVDPPRAG 291 (353)
T ss_pred C-cEEEEEcCHHHHHHHHhhccccccccccccccCCCCEEEECCCCCC
Confidence 4 79999999876211 1 2799999999643
No 140
>PRK06202 hypothetical protein; Provisional
Probab=98.92 E-value=1.3e-08 Score=94.10 Aligned_cols=78 Identities=22% Similarity=0.190 Sum_probs=58.9
Q ss_pred CCCCCCEEEEEcCcccHHHHHHHHc----C--CeEEEEeCCHHHHHHHHHHhhcCCCCCCeEEEEccccCCCC--CCCcc
Q 018261 53 GIKSTDVILEIGPGTGNLTKKLLEA----G--KMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTDL--PYFDI 124 (359)
Q Consensus 53 ~~~~~~~VLDIGcGtG~lt~~La~~----~--~~V~avDid~~~i~~a~~~~~~~~~~~~v~~i~~D~~~~~l--~~fD~ 124 (359)
...++.+|||||||+|.++..|++. + .+|+|+|+++.|++.|+++.... ++++...++..++. ..||+
T Consensus 57 ~~~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~----~~~~~~~~~~~l~~~~~~fD~ 132 (232)
T PRK06202 57 SADRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRP----GVTFRQAVSDELVAEGERFDV 132 (232)
T ss_pred CCCCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccC----CCeEEEEecccccccCCCccE
Confidence 3356779999999999999988753 2 48999999999999999876433 45566555544432 37999
Q ss_pred cccccccccc
Q 018261 125 CVANIPYQIS 134 (359)
Q Consensus 125 VvsNlPy~i~ 134 (359)
|++|..++..
T Consensus 133 V~~~~~lhh~ 142 (232)
T PRK06202 133 VTSNHFLHHL 142 (232)
T ss_pred EEECCeeecC
Confidence 9999865543
No 141
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=98.92 E-value=1.6e-08 Score=92.56 Aligned_cols=117 Identities=21% Similarity=0.260 Sum_probs=83.2
Q ss_pred cCHHHHHHHHHHcCC----CCCCEEEEEcCcccHHHHHHHHcCCeEEEEeCCHHHHHHHHHHhhcCCCCCCeEEEEcccc
Q 018261 40 KNPLLVESIVQKAGI----KSTDVILEIGPGTGNLTKKLLEAGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVL 115 (359)
Q Consensus 40 ~d~~v~~~iv~~~~~----~~~~~VLDIGcGtG~lt~~La~~~~~V~avDid~~~i~~a~~~~~~~~~~~~v~~i~~D~~ 115 (359)
.++..+..+.+.+.. ..+.+|||+|||+|.++..+++.+.+|+++|+++.++..+++++...+.. ++.+.++|+.
T Consensus 25 ~~~~~~~~i~~~~~~~~~~~~~~~vLdlG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~-~~~~~~~d~~ 103 (224)
T TIGR01983 25 MNPLRLDYIRDTIRKNKKPLFGLRVLDVGCGGGLLSEPLARLGANVTGIDASEENIEVAKLHAKKDPLL-KIEYRCTSVE 103 (224)
T ss_pred hhHHHHHHHHHHHHhcccCCCCCeEEEECCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHcCCC-ceEEEeCCHH
Confidence 355556666666542 34779999999999999999988888999999999999999988765432 5888999987
Q ss_pred CCCC---CCCcccccccccccchHHHHHHHhcCchhhHHHHHHHHHHHHHHhccCCCeeEEe
Q 018261 116 KTDL---PYFDICVANIPYQISSPLTFKLLFHQPAFRCAIIMFQKEFAMRLVAQPGDKLYCR 174 (359)
Q Consensus 116 ~~~l---~~fD~VvsNlPy~i~s~ii~~ll~~~~~~~~~~~~~qkE~a~Rlv~kpGg~~y~~ 174 (359)
+... ..||+|+++.. +++...+...+ +++. + +++|||.++..
T Consensus 104 ~~~~~~~~~~D~i~~~~~-----------l~~~~~~~~~l----~~~~-~-~L~~gG~l~i~ 148 (224)
T TIGR01983 104 DLAEKGAKSFDVVTCMEV-----------LEHVPDPQAFI----RACA-Q-LLKPGGILFFS 148 (224)
T ss_pred HhhcCCCCCccEEEehhH-----------HHhCCCHHHHH----HHHH-H-hcCCCcEEEEE
Confidence 6542 36999988542 33333333222 2332 2 67899987643
No 142
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=98.88 E-value=4.4e-09 Score=108.69 Aligned_cols=101 Identities=21% Similarity=0.299 Sum_probs=77.7
Q ss_pred cCCCcccccCHHHHHHHHHHcCCC-------CCCEEEEEcCcccHHHHHHHHcC----------CeEEEEeCCHHHHHHH
Q 018261 32 KSKGQHILKNPLLVESIVQKAGIK-------STDVILEIGPGTGNLTKKLLEAG----------KMVIAVELDSRMVLEL 94 (359)
Q Consensus 32 k~~GQ~fl~d~~v~~~iv~~~~~~-------~~~~VLDIGcGtG~lt~~La~~~----------~~V~avDid~~~i~~a 94 (359)
|+.||+| |++.+++.|++.+... ...+|||.|||+|.+...+++.. ..++|+|+|+.++..+
T Consensus 1 K~~Gqfy-TP~~ia~~mv~~~~~~~~~~~~~~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a 79 (524)
T TIGR02987 1 KAYGTFF-TPPDIAKAMVANLVNEIGKNDKSTKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRA 79 (524)
T ss_pred CCCcccC-CcHHHHHHHHHHHhhhcchhhcccceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHH
Confidence 5789866 9999999999876321 34589999999999998887642 4689999999999999
Q ss_pred HHHhhcCCCCCCeEEEEccccCCC-------CCCCcccccccccccc
Q 018261 95 QRRFQSTPYSNRLKVIQGDVLKTD-------LPYFDICVANIPYQIS 134 (359)
Q Consensus 95 ~~~~~~~~~~~~v~~i~~D~~~~~-------l~~fD~VvsNlPy~i~ 134 (359)
+.++...+ ...+.+.++|.+... .+.||+||+|+||.-.
T Consensus 80 ~~~l~~~~-~~~~~i~~~d~l~~~~~~~~~~~~~fD~IIgNPPy~~~ 125 (524)
T TIGR02987 80 KKLLGEFA-LLEINVINFNSLSYVLLNIESYLDLFDIVITNPPYGRL 125 (524)
T ss_pred HHHHhhcC-CCCceeeecccccccccccccccCcccEEEeCCCcccc
Confidence 99876554 114566777755421 2369999999999854
No 143
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=98.87 E-value=7.3e-09 Score=101.34 Aligned_cols=93 Identities=17% Similarity=0.293 Sum_probs=84.2
Q ss_pred cCHHHHHHHHHHcCCCCCCEEEEEcCcccHHHHHHHHcCC----------------------------------------
Q 018261 40 KNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEAGK---------------------------------------- 79 (359)
Q Consensus 40 ~d~~v~~~iv~~~~~~~~~~VLDIGcGtG~lt~~La~~~~---------------------------------------- 79 (359)
..+.++..|+..++..++..++|.=||+|++.++.|-.+.
T Consensus 175 LketLAaAil~lagw~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~ 254 (381)
T COG0116 175 LKETLAAAILLLAGWKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKEL 254 (381)
T ss_pred chHHHHHHHHHHcCCCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCcc
Confidence 4689999999999999999999999999999998876653
Q ss_pred -eEEEEeCCHHHHHHHHHHhhcCCCCCCeEEEEccccCCCCC--CCcccccccccc
Q 018261 80 -MVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTDLP--YFDICVANIPYQ 132 (359)
Q Consensus 80 -~V~avDid~~~i~~a~~~~~~~~~~~~v~~i~~D~~~~~l~--~fD~VvsNlPy~ 132 (359)
.++|+|+|+++++.|+.|....++.+.|+|.++|+..+..+ .+|+||||+||.
T Consensus 255 ~~~~G~Did~r~i~~Ak~NA~~AGv~d~I~f~~~d~~~l~~~~~~~gvvI~NPPYG 310 (381)
T COG0116 255 PIIYGSDIDPRHIEGAKANARAAGVGDLIEFKQADATDLKEPLEEYGVVISNPPYG 310 (381)
T ss_pred ceEEEecCCHHHHHHHHHHHHhcCCCceEEEEEcchhhCCCCCCcCCEEEeCCCcc
Confidence 37799999999999999999999888999999999987755 799999999997
No 144
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.87 E-value=2.7e-09 Score=90.50 Aligned_cols=101 Identities=19% Similarity=0.277 Sum_probs=81.5
Q ss_pred cccCCCcccccCHHHHHHHHHHcCC----CCCCEEEEEcCcccHHHHHHHHcC-CeEEEEeCCHHHHHHHHHHhhcCCCC
Q 018261 30 FHKSKGQHILKNPLLVESIVQKAGI----KSTDVILEIGPGTGNLTKKLLEAG-KMVIAVELDSRMVLELQRRFQSTPYS 104 (359)
Q Consensus 30 ~~k~~GQ~fl~d~~v~~~iv~~~~~----~~~~~VLDIGcGtG~lt~~La~~~-~~V~avDid~~~i~~a~~~~~~~~~~ 104 (359)
++-.+-| +.+.|.++..|+..+.- -.+..++|+|||+|.++...+-.+ ..|+|+||||+++++++.|.....+
T Consensus 19 pk~~LEQ-Y~T~p~iAasM~~~Ih~TygdiEgkkl~DLgcgcGmLs~a~sm~~~e~vlGfDIdpeALEIf~rNaeEfEv- 96 (185)
T KOG3420|consen 19 PKLLLEQ-YPTRPHIAASMLYTIHNTYGDIEGKKLKDLGCGCGMLSIAFSMPKNESVLGFDIDPEALEIFTRNAEEFEV- 96 (185)
T ss_pred cchhhhh-CCCcHHHHHHHHHHHHhhhccccCcchhhhcCchhhhHHHhhcCCCceEEeeecCHHHHHHHhhchHHhhh-
Confidence 3444444 67899999998876632 367899999999999997666553 6799999999999999999887654
Q ss_pred CCeEEEEccccCCCCC--CCccccccccccc
Q 018261 105 NRLKVIQGDVLKTDLP--YFDICVANIPYQI 133 (359)
Q Consensus 105 ~~v~~i~~D~~~~~l~--~fD~VvsNlPy~i 133 (359)
++.++++|++++.+. .||.+|.|+||..
T Consensus 97 -qidlLqcdildle~~~g~fDtaviNppFGT 126 (185)
T KOG3420|consen 97 -QIDLLQCDILDLELKGGIFDTAVINPPFGT 126 (185)
T ss_pred -hhheeeeeccchhccCCeEeeEEecCCCCc
Confidence 678999999986644 7999999999974
No 145
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=98.86 E-value=4.4e-09 Score=94.19 Aligned_cols=122 Identities=20% Similarity=0.259 Sum_probs=86.7
Q ss_pred cCHHHHHHHHHHcCCC--CCCEEEEEcCcccHHHHHHHHcC-CeEEEEeCCHHHHHHHHHHhhcCCCCCCeEEEEccccC
Q 018261 40 KNPLLVESIVQKAGIK--STDVILEIGPGTGNLTKKLLEAG-KMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLK 116 (359)
Q Consensus 40 ~d~~v~~~iv~~~~~~--~~~~VLDIGcGtG~lt~~La~~~-~~V~avDid~~~i~~a~~~~~~~~~~~~v~~i~~D~~~ 116 (359)
+...+.+.+...+... .+.+|||+-||||.++.+.+.+| .+|+.||.|+.++..+++|++..+...+++++++|+..
T Consensus 24 T~drvrealFniL~~~~~~g~~vLDLFaGSGalGlEALSRGA~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~ 103 (183)
T PF03602_consen 24 TTDRVREALFNILQPRNLEGARVLDLFAGSGALGLEALSRGAKSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFK 103 (183)
T ss_dssp SSHHHHHHHHHHHHCH-HTT-EEEETT-TTSHHHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHH
T ss_pred CcHHHHHHHHHHhcccccCCCeEEEcCCccCccHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHH
Confidence 5567888888877653 78999999999999999998886 68999999999999999999887766579999999754
Q ss_pred CC------CCCCcccccccccccchHHHHHHHhcCchhhHHHHHHHHHHHHHHhccCCCeeEEeec
Q 018261 117 TD------LPYFDICVANIPYQISSPLTFKLLFHQPAFRCAIIMFQKEFAMRLVAQPGDKLYCRLS 176 (359)
Q Consensus 117 ~~------l~~fD~VvsNlPy~i~s~ii~~ll~~~~~~~~~~~~~qkE~a~Rlv~kpGg~~y~~ls 176 (359)
.- ...||+|+.++||..... +..+++ .+...-+++++|.++...+
T Consensus 104 ~l~~~~~~~~~fDiIflDPPY~~~~~-~~~~l~--------------~l~~~~~l~~~~~ii~E~~ 154 (183)
T PF03602_consen 104 FLLKLAKKGEKFDIIFLDPPYAKGLY-YEELLE--------------LLAENNLLNEDGLIIIEHS 154 (183)
T ss_dssp HHHHHHHCTS-EEEEEE--STTSCHH-HHHHHH--------------HHHHTTSEEEEEEEEEEEE
T ss_pred HHHhhcccCCCceEEEECCCcccchH-HHHHHH--------------HHHHCCCCCCCEEEEEEec
Confidence 21 247999999999987642 111211 1122336778888876543
No 146
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=98.86 E-value=6.7e-09 Score=94.14 Aligned_cols=109 Identities=25% Similarity=0.323 Sum_probs=76.0
Q ss_pred ccccccccCCCcccccCHHHHHHHHHHcCCCCCCEEEEEcCcccHHHHHHHH--cCCeEEEEeCCHHHHHHHHHHhhcCC
Q 018261 25 AGGISFHKSKGQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLE--AGKMVIAVELDSRMVLELQRRFQSTP 102 (359)
Q Consensus 25 ~~~~~~~k~~GQ~fl~d~~v~~~iv~~~~~~~~~~VLDIGcGtG~lt~~La~--~~~~V~avDid~~~i~~a~~~~~~~~ 102 (359)
++|..+.-.+..-|+.+...-++.-=...+.++.+|+|+.||.|.+++.+++ .+.+|+|+|++|.+++.+++++..+.
T Consensus 70 E~G~~f~~D~~kvyfs~rl~~Er~Ri~~~v~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNk 149 (200)
T PF02475_consen 70 ENGIRFKVDLSKVYFSPRLSTERRRIANLVKPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNK 149 (200)
T ss_dssp ETTEEEEEETTTS---GGGHHHHHHHHTC--TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT
T ss_pred eCCEEEEEccceEEEccccHHHHHHHHhcCCcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcC
Confidence 4677777777777766554444432222357889999999999999999998 57899999999999999999999999
Q ss_pred CCCCeEEEEccccCCCC-CCCccccccccccc
Q 018261 103 YSNRLKVIQGDVLKTDL-PYFDICVANIPYQI 133 (359)
Q Consensus 103 ~~~~v~~i~~D~~~~~l-~~fD~VvsNlPy~i 133 (359)
+.+++.++++|+.++.. ..||.|++|+|...
T Consensus 150 v~~~i~~~~~D~~~~~~~~~~drvim~lp~~~ 181 (200)
T PF02475_consen 150 VENRIEVINGDAREFLPEGKFDRVIMNLPESS 181 (200)
T ss_dssp -TTTEEEEES-GGG---TT-EEEEEE--TSSG
T ss_pred CCCeEEEEcCCHHHhcCccccCEEEECChHHH
Confidence 88889999999998753 47999999998653
No 147
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=98.86 E-value=2.8e-09 Score=93.35 Aligned_cols=76 Identities=18% Similarity=0.235 Sum_probs=59.2
Q ss_pred CEEEEEcCcccHHHHHHHHcCCeEEEEeCCHHHHHHHHHHhhcCCCCCCeEEEEccccCCCC--C--C-Ccccccccccc
Q 018261 58 DVILEIGPGTGNLTKKLLEAGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTDL--P--Y-FDICVANIPYQ 132 (359)
Q Consensus 58 ~~VLDIGcGtG~lt~~La~~~~~V~avDid~~~i~~a~~~~~~~~~~~~v~~i~~D~~~~~l--~--~-fD~VvsNlPy~ 132 (359)
.+|+|+.||.|..|+.+|+...+|+|||+|+..++.|+.|++-+++++++.++++|+.++.. . . +|+|+.++|+.
T Consensus 1 ~~vlD~fcG~GGNtIqFA~~~~~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~~~~~~D~vFlSPPWG 80 (163)
T PF09445_consen 1 TTVLDAFCGVGGNTIQFARTFDRVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKRLKSNKIFDVVFLSPPWG 80 (163)
T ss_dssp SEEEETT-TTSHHHHHHHHTT-EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB------SEEEE---BS
T ss_pred CEEEEeccCcCHHHHHHHHhCCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhccccccccEEEECCCCC
Confidence 36999999999999999999999999999999999999999999988899999999987531 1 2 79999999976
Q ss_pred c
Q 018261 133 I 133 (359)
Q Consensus 133 i 133 (359)
-
T Consensus 81 G 81 (163)
T PF09445_consen 81 G 81 (163)
T ss_dssp S
T ss_pred C
Confidence 3
No 148
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=98.85 E-value=1.8e-08 Score=90.16 Aligned_cols=66 Identities=24% Similarity=0.392 Sum_probs=51.9
Q ss_pred cCCCCCCEEEEEcCcccHHHHHHHHcC---CeEEEEeCCHHHHHHHHHHhhcCCCCCCeEEEEccccCCC----------
Q 018261 52 AGIKSTDVILEIGPGTGNLTKKLLEAG---KMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTD---------- 118 (359)
Q Consensus 52 ~~~~~~~~VLDIGcGtG~lt~~La~~~---~~V~avDid~~~i~~a~~~~~~~~~~~~v~~i~~D~~~~~---------- 118 (359)
..+.++.+|||||||+|.++..+++.. .+|+++|+++.+ .. .+++++++|+.+..
T Consensus 28 ~~i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~---------~~---~~i~~~~~d~~~~~~~~~l~~~~~ 95 (188)
T TIGR00438 28 KLIKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK---------PI---ENVDFIRGDFTDEEVLNKIRERVG 95 (188)
T ss_pred cccCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc---------cC---CCceEEEeeCCChhHHHHHHHHhC
Confidence 355788999999999999999998763 479999999965 11 26889999987632
Q ss_pred CCCCccccccc
Q 018261 119 LPYFDICVANI 129 (359)
Q Consensus 119 l~~fD~VvsNl 129 (359)
...||+|+++.
T Consensus 96 ~~~~D~V~~~~ 106 (188)
T TIGR00438 96 DDKVDVVMSDA 106 (188)
T ss_pred CCCccEEEcCC
Confidence 23699999985
No 149
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=98.84 E-value=1.2e-08 Score=97.19 Aligned_cols=85 Identities=26% Similarity=0.418 Sum_probs=72.5
Q ss_pred HHHHHHHHcCCCCCCEEEEEcCcccHHHHHHHHcC-CeEEEEeCCHHHHHHHHHHhhcCCCCCCeEEEEccccCCCCC-C
Q 018261 44 LVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEAG-KMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTDLP-Y 121 (359)
Q Consensus 44 v~~~iv~~~~~~~~~~VLDIGcGtG~lt~~La~~~-~~V~avDid~~~i~~a~~~~~~~~~~~~v~~i~~D~~~~~l~-~ 121 (359)
.-+.|++......+..|||+|||+|.++...+..| ++|+|||-|. |.++|++....+.+.+++.+|.|-++++.+| .
T Consensus 165 Y~~Ail~N~sDF~~kiVlDVGaGSGILS~FAaqAGA~~vYAvEAS~-MAqyA~~Lv~~N~~~~rItVI~GKiEdieLPEk 243 (517)
T KOG1500|consen 165 YQRAILENHSDFQDKIVLDVGAGSGILSFFAAQAGAKKVYAVEASE-MAQYARKLVASNNLADRITVIPGKIEDIELPEK 243 (517)
T ss_pred HHHHHHhcccccCCcEEEEecCCccHHHHHHHHhCcceEEEEehhH-HHHHHHHHHhcCCccceEEEccCccccccCchh
Confidence 33555555555678899999999999999998886 7899999875 7799999999888888999999999999988 7
Q ss_pred Cccccccc
Q 018261 122 FDICVANI 129 (359)
Q Consensus 122 fD~VvsNl 129 (359)
.|++|+-+
T Consensus 244 ~DviISEP 251 (517)
T KOG1500|consen 244 VDVIISEP 251 (517)
T ss_pred ccEEEecc
Confidence 99999865
No 150
>PRK04148 hypothetical protein; Provisional
Probab=98.83 E-value=2.4e-08 Score=84.59 Aligned_cols=77 Identities=22% Similarity=0.305 Sum_probs=63.7
Q ss_pred HHHHHHHHcCCCCCCEEEEEcCcccH-HHHHHHHcCCeEEEEeCCHHHHHHHHHHhhcCCCCCCeEEEEccccCCCCC--
Q 018261 44 LVESIVQKAGIKSTDVILEIGPGTGN-LTKKLLEAGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTDLP-- 120 (359)
Q Consensus 44 v~~~iv~~~~~~~~~~VLDIGcGtG~-lt~~La~~~~~V~avDid~~~i~~a~~~~~~~~~~~~v~~i~~D~~~~~l~-- 120 (359)
+.+.|.+.+....+.+|||||||+|. ++..|++.|..|+|+|+++.+++.++++ .+.++.+|+++.++.
T Consensus 4 i~~~l~~~~~~~~~~kileIG~GfG~~vA~~L~~~G~~ViaIDi~~~aV~~a~~~--------~~~~v~dDlf~p~~~~y 75 (134)
T PRK04148 4 IAEFIAENYEKGKNKKIVELGIGFYFKVAKKLKESGFDVIVIDINEKAVEKAKKL--------GLNAFVDDLFNPNLEIY 75 (134)
T ss_pred HHHHHHHhcccccCCEEEEEEecCCHHHHHHHHHCCCEEEEEECCHHHHHHHHHh--------CCeEEECcCCCCCHHHH
Confidence 55666666655567899999999996 9999999999999999999999888775 467999999987755
Q ss_pred -CCcccccc
Q 018261 121 -YFDICVAN 128 (359)
Q Consensus 121 -~fD~VvsN 128 (359)
.+|+|.+-
T Consensus 76 ~~a~liysi 84 (134)
T PRK04148 76 KNAKLIYSI 84 (134)
T ss_pred hcCCEEEEe
Confidence 57888874
No 151
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=98.83 E-value=4.2e-08 Score=88.29 Aligned_cols=77 Identities=29% Similarity=0.392 Sum_probs=59.3
Q ss_pred HHHHHHcCCCCCCEEEEEcCcccHHHHHHHHc-CCeEEEEeCCHHHHHHHHHHhhcCCCCCCeEEEEccccC-CC-C--C
Q 018261 46 ESIVQKAGIKSTDVILEIGPGTGNLTKKLLEA-GKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLK-TD-L--P 120 (359)
Q Consensus 46 ~~iv~~~~~~~~~~VLDIGcGtG~lt~~La~~-~~~V~avDid~~~i~~a~~~~~~~~~~~~v~~i~~D~~~-~~-l--~ 120 (359)
+.+.+.+ .++.+|||||||+|.++..+++. +..++|+|+++.++..++++ +++++++|+.+ ++ + .
T Consensus 5 ~~i~~~i--~~~~~iLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~i~~a~~~--------~~~~~~~d~~~~l~~~~~~ 74 (194)
T TIGR02081 5 ESILNLI--PPGSRVLDLGCGDGELLALLRDEKQVRGYGIEIDQDGVLACVAR--------GVNVIQGDLDEGLEAFPDK 74 (194)
T ss_pred HHHHHhc--CCCCEEEEeCCCCCHHHHHHHhccCCcEEEEeCCHHHHHHHHHc--------CCeEEEEEhhhcccccCCC
Confidence 3445554 46789999999999999999865 56889999999999888652 57788899865 22 2 3
Q ss_pred CCcccccccccc
Q 018261 121 YFDICVANIPYQ 132 (359)
Q Consensus 121 ~fD~VvsNlPy~ 132 (359)
+||+|++|.+++
T Consensus 75 sfD~Vi~~~~l~ 86 (194)
T TIGR02081 75 SFDYVILSQTLQ 86 (194)
T ss_pred CcCEEEEhhHhH
Confidence 799999987544
No 152
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=98.80 E-value=5.5e-08 Score=75.54 Aligned_cols=74 Identities=22% Similarity=0.376 Sum_probs=60.2
Q ss_pred EEEEEcCcccHHHHHHHH-cCCeEEEEeCCHHHHHHHHHHhhcCCCCCCeEEEEccccCCC---CCCCccccccccccc
Q 018261 59 VILEIGPGTGNLTKKLLE-AGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTD---LPYFDICVANIPYQI 133 (359)
Q Consensus 59 ~VLDIGcGtG~lt~~La~-~~~~V~avDid~~~i~~a~~~~~~~~~~~~v~~i~~D~~~~~---l~~fD~VvsNlPy~i 133 (359)
+|+|+|||+|.++..+++ ...+++++|+++.++..+++...... ..+++++.+|+.+.. .+.+|+|+++.+++.
T Consensus 1 ~ildig~G~G~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~ 78 (107)
T cd02440 1 RVLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAALL-ADNVEVLKGDAEELPPEADESFDVIISDPPLHH 78 (107)
T ss_pred CeEEEcCCccHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhccc-ccceEEEEcChhhhccccCCceEEEEEccceee
Confidence 489999999999999997 46899999999999999885433222 237899999998865 347999999998875
No 153
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=98.80 E-value=2e-08 Score=90.04 Aligned_cols=101 Identities=18% Similarity=0.196 Sum_probs=74.2
Q ss_pred CCCEEEEEcCcccHHHHHHHH-cCCeEEEEeCCHHHHHHHHHHhhcCCCCCCeE-EEEccccCCC-CC--CCcccccccc
Q 018261 56 STDVILEIGPGTGNLTKKLLE-AGKMVIAVELDSRMVLELQRRFQSTPYSNRLK-VIQGDVLKTD-LP--YFDICVANIP 130 (359)
Q Consensus 56 ~~~~VLDIGcGtG~lt~~La~-~~~~V~avDid~~~i~~a~~~~~~~~~~~~v~-~i~~D~~~~~-l~--~fD~VvsNlP 130 (359)
....|||+|||||..-..+-- .+.+|+++|.++.|-++|.+.+..... .++. ++.++.++++ ++ ++|.||+-+
T Consensus 76 ~K~~vLEvgcGtG~Nfkfy~~~p~~svt~lDpn~~mee~~~ks~~E~k~-~~~~~fvva~ge~l~~l~d~s~DtVV~Tl- 153 (252)
T KOG4300|consen 76 GKGDVLEVGCGTGANFKFYPWKPINSVTCLDPNEKMEEIADKSAAEKKP-LQVERFVVADGENLPQLADGSYDTVVCTL- 153 (252)
T ss_pred CccceEEecccCCCCcccccCCCCceEEEeCCcHHHHHHHHHHHhhccC-cceEEEEeechhcCcccccCCeeeEEEEE-
Confidence 334689999999988766542 378999999999999999998876532 3666 9999999876 43 799998865
Q ss_pred cccchHHHHHHHhcCchhhHHHHHHHHHHHHHHhccCCCeeEEe
Q 018261 131 YQISSPLTFKLLFHQPAFRCAIIMFQKEFAMRLVAQPGDKLYCR 174 (359)
Q Consensus 131 y~i~s~ii~~ll~~~~~~~~~~~~~qkE~a~Rlv~kpGg~~y~~ 174 (359)
.|.+..++...+ +|+ |.+++|||.++.-
T Consensus 154 ----------vLCSve~~~k~L----~e~--~rlLRpgG~iifi 181 (252)
T KOG4300|consen 154 ----------VLCSVEDPVKQL----NEV--RRLLRPGGRIIFI 181 (252)
T ss_pred ----------EEeccCCHHHHH----HHH--HHhcCCCcEEEEE
Confidence 233333444444 676 3489999988643
No 154
>PRK04457 spermidine synthase; Provisional
Probab=98.79 E-value=4.3e-07 Score=85.85 Aligned_cols=86 Identities=20% Similarity=0.254 Sum_probs=65.9
Q ss_pred HHHHHHHHcC-CCCCCEEEEEcCcccHHHHHHHHc--CCeEEEEeCCHHHHHHHHHHhhcCCCCCCeEEEEccccCC---
Q 018261 44 LVESIVQKAG-IKSTDVILEIGPGTGNLTKKLLEA--GKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKT--- 117 (359)
Q Consensus 44 v~~~iv~~~~-~~~~~~VLDIGcGtG~lt~~La~~--~~~V~avDid~~~i~~a~~~~~~~~~~~~v~~i~~D~~~~--- 117 (359)
..+.|...+. ..++.+|||||||+|.++..+++. ..+|++||+|+.+++.|++++.......+++++++|+.++
T Consensus 53 y~~~m~~~l~~~~~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~ 132 (262)
T PRK04457 53 YTRAMMGFLLFNPRPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAV 132 (262)
T ss_pred HHHHHHHHHhcCCCCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHh
Confidence 3444543332 345678999999999999999876 4789999999999999999886543345899999998653
Q ss_pred CCCCCccccccc
Q 018261 118 DLPYFDICVANI 129 (359)
Q Consensus 118 ~l~~fD~VvsNl 129 (359)
....||+|+++.
T Consensus 133 ~~~~yD~I~~D~ 144 (262)
T PRK04457 133 HRHSTDVILVDG 144 (262)
T ss_pred CCCCCCEEEEeC
Confidence 123799999874
No 155
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=98.79 E-value=2.3e-08 Score=96.24 Aligned_cols=79 Identities=29% Similarity=0.390 Sum_probs=67.4
Q ss_pred HHHcCCCCCCEEEEEcCcccHHHHHHHHcC-CeEEEEeCCHHHHHHHHHHhhcCCCCCCeEEEEccccCCCCC--CCccc
Q 018261 49 VQKAGIKSTDVILEIGPGTGNLTKKLLEAG-KMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTDLP--YFDIC 125 (359)
Q Consensus 49 v~~~~~~~~~~VLDIGcGtG~lt~~La~~~-~~V~avDid~~~i~~a~~~~~~~~~~~~v~~i~~D~~~~~l~--~fD~V 125 (359)
+..-.+..+++|||+|||||.|+...|+.| .+|+|||.+.-+ ..|++.+..+++.+.++++.+.++++.+| ..|+|
T Consensus 53 ~~n~~lf~dK~VlDVGcGtGILS~F~akAGA~~V~aVe~S~ia-~~a~~iv~~N~~~~ii~vi~gkvEdi~LP~eKVDiI 131 (346)
T KOG1499|consen 53 LQNKHLFKDKTVLDVGCGTGILSMFAAKAGARKVYAVEASSIA-DFARKIVKDNGLEDVITVIKGKVEDIELPVEKVDII 131 (346)
T ss_pred hcchhhcCCCEEEEcCCCccHHHHHHHHhCcceEEEEechHHH-HHHHHHHHhcCccceEEEeecceEEEecCccceeEE
Confidence 333345678999999999999999999996 689999998755 99999999998888899999999987666 78999
Q ss_pred ccc
Q 018261 126 VAN 128 (359)
Q Consensus 126 vsN 128 (359)
|+-
T Consensus 132 vSE 134 (346)
T KOG1499|consen 132 VSE 134 (346)
T ss_pred eeh
Confidence 884
No 156
>PLN02476 O-methyltransferase
Probab=98.76 E-value=6.8e-08 Score=91.67 Aligned_cols=92 Identities=16% Similarity=0.172 Sum_probs=74.0
Q ss_pred ccCHHHHHHHHHHcCCCCCCEEEEEcCcccHHHHHHHHc---CCeEEEEeCCHHHHHHHHHHhhcCCCCCCeEEEEcccc
Q 018261 39 LKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEA---GKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVL 115 (359)
Q Consensus 39 l~d~~v~~~iv~~~~~~~~~~VLDIGcGtG~lt~~La~~---~~~V~avDid~~~i~~a~~~~~~~~~~~~v~~i~~D~~ 115 (359)
.+.+...+.+.-.+......+|||||||+|+.|..++.. ..+|+++|.++++++.|+++++..++.++++++.+|+.
T Consensus 101 ~v~~~~g~lL~~L~~~~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~ 180 (278)
T PLN02476 101 QVSPDQAQLLAMLVQILGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAA 180 (278)
T ss_pred ccCHHHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHH
Confidence 345555554544555567789999999999999999874 46899999999999999999999988889999999997
Q ss_pred CCC--------CCCCcccccccc
Q 018261 116 KTD--------LPYFDICVANIP 130 (359)
Q Consensus 116 ~~~--------l~~fD~VvsNlP 130 (359)
+.- ...||+|+...+
T Consensus 181 e~L~~l~~~~~~~~FD~VFIDa~ 203 (278)
T PLN02476 181 ESLKSMIQNGEGSSYDFAFVDAD 203 (278)
T ss_pred HHHHHHHhcccCCCCCEEEECCC
Confidence 631 137999998764
No 157
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=98.76 E-value=3e-08 Score=97.54 Aligned_cols=110 Identities=23% Similarity=0.293 Sum_probs=75.5
Q ss_pred ccccccCCCcccccCHHHHHHHHH----HcCCCCCCEEEEEcCcccHHHHHHHHcCCeEEEEeCCHHHHHHHHHHhhcCC
Q 018261 27 GISFHKSKGQHILKNPLLVESIVQ----KAGIKSTDVILEIGPGTGNLTKKLLEAGKMVIAVELDSRMVLELQRRFQSTP 102 (359)
Q Consensus 27 ~~~~~k~~GQ~fl~d~~v~~~iv~----~~~~~~~~~VLDIGcGtG~lt~~La~~~~~V~avDid~~~i~~a~~~~~~~~ 102 (359)
++.++-+.+..|-.|+...+.|++ .++..++ .|||+-||+|++|..|++.+.+|+|||+++.+++.|++++..++
T Consensus 164 ~~~~~~~~~sFfQvN~~~~~~l~~~~~~~l~~~~~-~vlDlycG~G~fsl~la~~~~~V~gvE~~~~av~~A~~Na~~N~ 242 (352)
T PF05958_consen 164 GLSFRISPGSFFQVNPEQNEKLYEQALEWLDLSKG-DVLDLYCGVGTFSLPLAKKAKKVIGVEIVEEAVEDARENAKLNG 242 (352)
T ss_dssp TEEEEEETTS---SBHHHHHHHHHHHHHHCTT-TT-EEEEES-TTTCCHHHHHCCSSEEEEEES-HHHHHHHHHHHHHTT
T ss_pred ceEEEECCCcCccCcHHHHHHHHHHHHHHhhcCCC-cEEEEeecCCHHHHHHHhhCCeEEEeeCCHHHHHHHHHHHHHcC
Confidence 556666667777777766665554 5565555 89999999999999999999999999999999999999999888
Q ss_pred CCCCeEEEEccccCCC----------------CC--CCcccccccccccchHHH
Q 018261 103 YSNRLKVIQGDVLKTD----------------LP--YFDICVANIPYQISSPLT 138 (359)
Q Consensus 103 ~~~~v~~i~~D~~~~~----------------l~--~fD~VvsNlPy~i~s~ii 138 (359)
+. |++++++++.++. +. .+|+|+.++|-.-..+.+
T Consensus 243 i~-n~~f~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~d~vilDPPR~G~~~~~ 295 (352)
T PF05958_consen 243 ID-NVEFIRGDAEDFAKALAKAREFNRLKGIDLKSFKFDAVILDPPRAGLDEKV 295 (352)
T ss_dssp ---SEEEEE--SHHCCCHHCCS-GGTTGGGS-GGCTTESEEEE---TT-SCHHH
T ss_pred CC-cceEEEeeccchhHHHHhhHHHHhhhhhhhhhcCCCEEEEcCCCCCchHHH
Confidence 75 8999998775431 11 468899999977655433
No 158
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=98.75 E-value=7.5e-08 Score=96.89 Aligned_cols=111 Identities=21% Similarity=0.234 Sum_probs=90.2
Q ss_pred ccccccCCCcccccCHHHHHHHH----HHcCCCCCCEEEEEcCcccHHHHHHHHcCCeEEEEeCCHHHHHHHHHHhhcCC
Q 018261 27 GISFHKSKGQHILKNPLLVESIV----QKAGIKSTDVILEIGPGTGNLTKKLLEAGKMVIAVELDSRMVLELQRRFQSTP 102 (359)
Q Consensus 27 ~~~~~k~~GQ~fl~d~~v~~~iv----~~~~~~~~~~VLDIGcGtG~lt~~La~~~~~V~avDid~~~i~~a~~~~~~~~ 102 (359)
+..++-..+-.|-.|+.+.+.|+ +.++..++++|||+=||.|++|+.|++...+|+|+|+++.+++.|+++.+.++
T Consensus 260 ~~~~~~~~~sF~Q~N~~~~ekl~~~a~~~~~~~~~~~vlDlYCGvG~f~l~lA~~~~~V~gvEi~~~aV~~A~~NA~~n~ 339 (432)
T COG2265 260 GVSFQISPRSFFQVNPAVAEKLYETALEWLELAGGERVLDLYCGVGTFGLPLAKRVKKVHGVEISPEAVEAAQENAAANG 339 (432)
T ss_pred ceEEEeCCCCceecCHHHHHHHHHHHHHHHhhcCCCEEEEeccCCChhhhhhcccCCEEEEEecCHHHHHHHHHHHHHcC
Confidence 44555555556667776666555 45677788999999999999999999999999999999999999999999998
Q ss_pred CCCCeEEEEccccCCCC-----CCCcccccccccccchHHH
Q 018261 103 YSNRLKVIQGDVLKTDL-----PYFDICVANIPYQISSPLT 138 (359)
Q Consensus 103 ~~~~v~~i~~D~~~~~l-----~~fD~VvsNlPy~i~s~ii 138 (359)
+. |++|+.+|++++.. ..+|.||.++|-.-..+-+
T Consensus 340 i~-N~~f~~~~ae~~~~~~~~~~~~d~VvvDPPR~G~~~~~ 379 (432)
T COG2265 340 ID-NVEFIAGDAEEFTPAWWEGYKPDVVVVDPPRAGADREV 379 (432)
T ss_pred CC-cEEEEeCCHHHHhhhccccCCCCEEEECCCCCCCCHHH
Confidence 76 69999999988643 2689999999987665433
No 159
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=98.75 E-value=3.1e-08 Score=105.69 Aligned_cols=94 Identities=16% Similarity=0.222 Sum_probs=80.9
Q ss_pred cCHHHHHHHHHHcCC-CCCCEEEEEcCcccHHHHHHHHc-----------------------------------------
Q 018261 40 KNPLLVESIVQKAGI-KSTDVILEIGPGTGNLTKKLLEA----------------------------------------- 77 (359)
Q Consensus 40 ~d~~v~~~iv~~~~~-~~~~~VLDIGcGtG~lt~~La~~----------------------------------------- 77 (359)
..+.++..|+..+++ .++..++|.+||+|++.++.+..
T Consensus 173 l~etlAaa~l~~a~w~~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~ 252 (702)
T PRK11783 173 LKENLAAAILLRSGWPQEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGL 252 (702)
T ss_pred CcHHHHHHHHHHcCCCCCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcc
Confidence 568999999999988 66889999999999999877642
Q ss_pred ---CCeEEEEeCCHHHHHHHHHHhhcCCCCCCeEEEEccccCCCCC----CCccccccccccc
Q 018261 78 ---GKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTDLP----YFDICVANIPYQI 133 (359)
Q Consensus 78 ---~~~V~avDid~~~i~~a~~~~~~~~~~~~v~~i~~D~~~~~l~----~fD~VvsNlPy~i 133 (359)
..+++|+|+|+.++..|++|+..+++.+.+++.++|+.++..+ .||+||+|+||..
T Consensus 253 ~~~~~~i~G~Did~~av~~A~~N~~~~g~~~~i~~~~~D~~~~~~~~~~~~~d~IvtNPPYg~ 315 (702)
T PRK11783 253 AELPSKFYGSDIDPRVIQAARKNARRAGVAELITFEVKDVADLKNPLPKGPTGLVISNPPYGE 315 (702)
T ss_pred cccCceEEEEECCHHHHHHHHHHHHHcCCCcceEEEeCChhhcccccccCCCCEEEECCCCcC
Confidence 1269999999999999999999888877899999999887543 4999999999974
No 160
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=98.74 E-value=1.4e-07 Score=84.14 Aligned_cols=123 Identities=20% Similarity=0.259 Sum_probs=93.1
Q ss_pred cCHHHHHHHHHHcCC--CCCCEEEEEcCcccHHHHHHHHcC-CeEEEEeCCHHHHHHHHHHhhcCCCCCCeEEEEccccC
Q 018261 40 KNPLLVESIVQKAGI--KSTDVILEIGPGTGNLTKKLLEAG-KMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLK 116 (359)
Q Consensus 40 ~d~~v~~~iv~~~~~--~~~~~VLDIGcGtG~lt~~La~~~-~~V~avDid~~~i~~a~~~~~~~~~~~~v~~i~~D~~~ 116 (359)
+-..+.+.+.+.+.. -.+.++||+-+|+|.++.+.+.+| .+|+.||.|.+.+..+++|+...++..+++++..|+..
T Consensus 25 T~drVREalFNil~~~~i~g~~~LDlFAGSGaLGlEAlSRGA~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~ 104 (187)
T COG0742 25 TTDRVREALFNILAPDEIEGARVLDLFAGSGALGLEALSRGAARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALR 104 (187)
T ss_pred CchHHHHHHHHhccccccCCCEEEEecCCccHhHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHHH
Confidence 446778888888765 578999999999999999999885 78999999999999999999887766799999999984
Q ss_pred C----CCC-CCcccccccccccchHHHHHHHhcCchhhHHHHHHHHHHHHHHhccCCCeeEEeec
Q 018261 117 T----DLP-YFDICVANIPYQISSPLTFKLLFHQPAFRCAIIMFQKEFAMRLVAQPGDKLYCRLS 176 (359)
Q Consensus 117 ~----~l~-~fD~VvsNlPy~i~s~ii~~ll~~~~~~~~~~~~~qkE~a~Rlv~kpGg~~y~~ls 176 (359)
. ... .||+|+..+||+..- +...+ .+ ......-+++|++.+|....
T Consensus 105 ~L~~~~~~~~FDlVflDPPy~~~l--~~~~~--------~~----~~~~~~~~L~~~~~iv~E~~ 155 (187)
T COG0742 105 ALKQLGTREPFDLVFLDPPYAKGL--LDKEL--------AL----LLLEENGWLKPGALIVVEHD 155 (187)
T ss_pred HHHhcCCCCcccEEEeCCCCccch--hhHHH--------HH----HHHHhcCCcCCCcEEEEEeC
Confidence 3 111 499999999999431 10000 01 01112336889999887654
No 161
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=98.73 E-value=2.6e-08 Score=90.08 Aligned_cols=91 Identities=21% Similarity=0.256 Sum_probs=70.6
Q ss_pred cccCHHHHHHHHHHcCCCC--CCEEEEEcCcccHHHHHHHHcCCeEEEEeCCHHHHHHHHHHhhcCCCCCCeEEEEcccc
Q 018261 38 ILKNPLLVESIVQKAGIKS--TDVILEIGPGTGNLTKKLLEAGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVL 115 (359)
Q Consensus 38 fl~d~~v~~~iv~~~~~~~--~~~VLDIGcGtG~lt~~La~~~~~V~avDid~~~i~~a~~~~~~~~~~~~v~~i~~D~~ 115 (359)
.++...+.++.++.+.+.. +.-|||||||+|.-+..|...|..++|+|||+.|+++|.+..-. -.++.+|+-
T Consensus 30 ~~IQ~em~eRaLELLalp~~~~~~iLDIGCGsGLSg~vL~~~Gh~wiGvDiSpsML~~a~~~e~e------gdlil~DMG 103 (270)
T KOG1541|consen 30 VLIQAEMAERALELLALPGPKSGLILDIGCGSGLSGSVLSDSGHQWIGVDISPSMLEQAVERELE------GDLILCDMG 103 (270)
T ss_pred eeehHHHHHHHHHHhhCCCCCCcEEEEeccCCCcchheeccCCceEEeecCCHHHHHHHHHhhhh------cCeeeeecC
Confidence 4456777888888887766 67899999999999999998899999999999999999874211 247788876
Q ss_pred C-CCCC--CCcccccccccccc
Q 018261 116 K-TDLP--YFDICVANIPYQIS 134 (359)
Q Consensus 116 ~-~~l~--~fD~VvsNlPy~i~ 134 (359)
+ +++. .||.+|+--..+|.
T Consensus 104 ~GlpfrpGtFDg~ISISAvQWL 125 (270)
T KOG1541|consen 104 EGLPFRPGTFDGVISISAVQWL 125 (270)
T ss_pred CCCCCCCCccceEEEeeeeeee
Confidence 4 3333 79988876655554
No 162
>PRK00811 spermidine synthase; Provisional
Probab=98.71 E-value=9e-08 Score=91.46 Aligned_cols=76 Identities=22% Similarity=0.360 Sum_probs=61.7
Q ss_pred CCCCEEEEEcCcccHHHHHHHHc--CCeEEEEeCCHHHHHHHHHHhhcCC----CCCCeEEEEccccCCC---CCCCccc
Q 018261 55 KSTDVILEIGPGTGNLTKKLLEA--GKMVIAVELDSRMVLELQRRFQSTP----YSNRLKVIQGDVLKTD---LPYFDIC 125 (359)
Q Consensus 55 ~~~~~VLDIGcGtG~lt~~La~~--~~~V~avDid~~~i~~a~~~~~~~~----~~~~v~~i~~D~~~~~---l~~fD~V 125 (359)
..+.+||+||||+|.++..+++. ..+|++||+|+.+++.|++.+.... -+.+++++.+|+.++- ...||+|
T Consensus 75 ~~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvI 154 (283)
T PRK00811 75 PNPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDVI 154 (283)
T ss_pred CCCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccEE
Confidence 45679999999999999999987 3689999999999999999875321 1348999999987632 2379999
Q ss_pred ccccc
Q 018261 126 VANIP 130 (359)
Q Consensus 126 vsNlP 130 (359)
+++++
T Consensus 155 i~D~~ 159 (283)
T PRK00811 155 IVDST 159 (283)
T ss_pred EECCC
Confidence 99863
No 163
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=98.69 E-value=4.3e-08 Score=89.31 Aligned_cols=75 Identities=27% Similarity=0.364 Sum_probs=63.4
Q ss_pred CCCCEEEEEcCcccHHHHHHHHc---CCeEEEEeCCHHHHHHHHHHhhcCCCCCCeEEEEccccCCC--------CCCCc
Q 018261 55 KSTDVILEIGPGTGNLTKKLLEA---GKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTD--------LPYFD 123 (359)
Q Consensus 55 ~~~~~VLDIGcGtG~lt~~La~~---~~~V~avDid~~~i~~a~~~~~~~~~~~~v~~i~~D~~~~~--------l~~fD 123 (359)
....+||||||++|+-|..+++. +.+|+++|++++.++.|++++...++.++++++.+|+.++- ...||
T Consensus 44 ~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~~~~fD 123 (205)
T PF01596_consen 44 TRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELANDGEEGQFD 123 (205)
T ss_dssp HT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHHTTTTTSEE
T ss_pred cCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHhccCCCcee
Confidence 45679999999999999999975 57999999999999999999998888779999999997631 13699
Q ss_pred cccccc
Q 018261 124 ICVANI 129 (359)
Q Consensus 124 ~VvsNl 129 (359)
+|+...
T Consensus 124 ~VFiDa 129 (205)
T PF01596_consen 124 FVFIDA 129 (205)
T ss_dssp EEEEES
T ss_pred EEEEcc
Confidence 998865
No 164
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=98.68 E-value=5.3e-08 Score=98.51 Aligned_cols=73 Identities=36% Similarity=0.636 Sum_probs=59.1
Q ss_pred CCEEEEEcCcccHHHHHHHHcC------CeEEEEeCCHHHHHHHHHHhhcCCCCCCeEEEEccccCCCCC-CCccccccc
Q 018261 57 TDVILEIGPGTGNLTKKLLEAG------KMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTDLP-YFDICVANI 129 (359)
Q Consensus 57 ~~~VLDIGcGtG~lt~~La~~~------~~V~avDid~~~i~~a~~~~~~~~~~~~v~~i~~D~~~~~l~-~fD~VvsNl 129 (359)
+..|||||||+|-|....++.+ .+|+|||.++.++..+++++..+++.++|+++++|+.++.++ .+|+|||-+
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~lpekvDIIVSEl 266 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWGDKVTVIHGDMREVELPEKVDIIVSEL 266 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTTTTEEEEES-TTTSCHSS-EEEEEE--
T ss_pred ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCCCeEEEEeCcccCCCCCCceeEEEEec
Confidence 5689999999999998777664 699999999999988888767777778999999999999877 799999843
No 165
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=98.68 E-value=1.3e-07 Score=90.03 Aligned_cols=112 Identities=18% Similarity=0.232 Sum_probs=71.6
Q ss_pred HHHHHHcCCCCCCEEEEEcCcccHHHHHHHHcC-CeEEEEeCCHHHHHHHHHHhhcCCCCCCeEEEEccccCCC-CCCCc
Q 018261 46 ESIVQKAGIKSTDVILEIGPGTGNLTKKLLEAG-KMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTD-LPYFD 123 (359)
Q Consensus 46 ~~iv~~~~~~~~~~VLDIGcGtG~lt~~La~~~-~~V~avDid~~~i~~a~~~~~~~~~~~~v~~i~~D~~~~~-l~~fD 123 (359)
+++...+..-.+.+|||||||.|+.+..++..| ..|+|+|.++..+.+.+....-.+....+..+.--+++++ ...||
T Consensus 105 ~rl~p~l~~L~gk~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lplgvE~Lp~~~~FD 184 (315)
T PF08003_consen 105 DRLLPHLPDLKGKRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSPLFYLQFEAIKHFLGQDPPVFELPLGVEDLPNLGAFD 184 (315)
T ss_pred HHHHhhhCCcCCCEEEEecCCCcHHHHHHhhcCCCEEEEECCChHHHHHHHHHHHHhCCCccEEEcCcchhhccccCCcC
Confidence 445566655678999999999999999999887 5699999999887764332211111123444433445444 34799
Q ss_pred ccccccccccchHHHHHHHhcCchhhHHHHHHHHHHHHHHhccCCCeeEEe
Q 018261 124 ICVANIPYQISSPLTFKLLFHQPAFRCAIIMFQKEFAMRLVAQPGDKLYCR 174 (359)
Q Consensus 124 ~VvsNlPy~i~s~ii~~ll~~~~~~~~~~~~~qkE~a~Rlv~kpGg~~y~~ 174 (359)
.|+|- .+|-|...+-.++ +++ |-.++|||.++..
T Consensus 185 tVF~M-----------GVLYHrr~Pl~~L----~~L--k~~L~~gGeLvLE 218 (315)
T PF08003_consen 185 TVFSM-----------GVLYHRRSPLDHL----KQL--KDSLRPGGELVLE 218 (315)
T ss_pred EEEEe-----------eehhccCCHHHHH----HHH--HHhhCCCCEEEEE
Confidence 99883 3444444443333 233 3378999987644
No 166
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=98.67 E-value=3.3e-07 Score=93.25 Aligned_cols=131 Identities=18% Similarity=0.206 Sum_probs=91.8
Q ss_pred HHHHHHc--CCCCCCEEEEEcCcccHHHHHHHHc---CCeEEEEeCCHHHHHHHHHHhhcCCCCCCeEEEEccccCCC--
Q 018261 46 ESIVQKA--GIKSTDVILEIGPGTGNLTKKLLEA---GKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTD-- 118 (359)
Q Consensus 46 ~~iv~~~--~~~~~~~VLDIGcGtG~lt~~La~~---~~~V~avDid~~~i~~a~~~~~~~~~~~~v~~i~~D~~~~~-- 118 (359)
...+..+ ++.++.+|||+|+|+|.-|.+++.. ...|+|+|+++..+..+++++...++. |+.+.+.|...+.
T Consensus 101 ~l~~~~L~~~~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~-nv~v~~~D~~~~~~~ 179 (470)
T PRK11933 101 MLPVAALFADDNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVS-NVALTHFDGRVFGAA 179 (470)
T ss_pred HHHHHHhccCCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-eEEEEeCchhhhhhh
Confidence 3344555 7789999999999999999999876 268999999999999999999988764 7899999987653
Q ss_pred C-CCCcccccccccccch-----HHHHHHHhcCchhhHHHHHHHHHHHHH--HhccCCCee-EEeecchh
Q 018261 119 L-PYFDICVANIPYQISS-----PLTFKLLFHQPAFRCAIIMFQKEFAMR--LVAQPGDKL-YCRLSVNT 179 (359)
Q Consensus 119 l-~~fD~VvsNlPy~i~s-----~ii~~ll~~~~~~~~~~~~~qkE~a~R--lv~kpGg~~-y~~lsv~~ 179 (359)
+ ..||.|+...|..-.. |-.. + ...+.-...+...|+++-.. -.++|||.+ |+++|+..
T Consensus 180 ~~~~fD~ILvDaPCSG~G~~rk~p~~~-~-~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT~~~ 247 (470)
T PRK11933 180 LPETFDAILLDAPCSGEGTVRKDPDAL-K-NWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCTLNR 247 (470)
T ss_pred chhhcCeEEEcCCCCCCcccccCHHHh-h-hCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCH
Confidence 2 2699999999976331 1110 0 00111112233455544421 156899875 99988764
No 167
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=98.66 E-value=1.2e-07 Score=94.12 Aligned_cols=89 Identities=13% Similarity=0.101 Sum_probs=68.7
Q ss_pred CHHHHHHHHHHcCCC-CCCEEEEEcCcccHHHHHHHHcC--CeEEEEeCCHHHHHHHHHHhhcCCCCCCeEEEEccccCC
Q 018261 41 NPLLVESIVQKAGIK-STDVILEIGPGTGNLTKKLLEAG--KMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKT 117 (359)
Q Consensus 41 d~~v~~~iv~~~~~~-~~~~VLDIGcGtG~lt~~La~~~--~~V~avDid~~~i~~a~~~~~~~~~~~~v~~i~~D~~~~ 117 (359)
++.+...+++.+... .+.+|||++||+|.+++.++... .+|+++|+++.+++.+++|+..+++. +++++++|+..+
T Consensus 41 nrdl~~~v~~~~~~~~~~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~~-~~~v~~~Da~~~ 119 (382)
T PRK04338 41 NRDISVLVLRAFGPKLPRESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGLE-NEKVFNKDANAL 119 (382)
T ss_pred hhhHHHHHHHHHHhhcCCCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCC-ceEEEhhhHHHH
Confidence 344445555554322 34689999999999999998753 48999999999999999999877754 677999998763
Q ss_pred C--CCCCcccccccc
Q 018261 118 D--LPYFDICVANIP 130 (359)
Q Consensus 118 ~--l~~fD~VvsNlP 130 (359)
- ...||+|+.|+|
T Consensus 120 l~~~~~fD~V~lDP~ 134 (382)
T PRK04338 120 LHEERKFDVVDIDPF 134 (382)
T ss_pred HhhcCCCCEEEECCC
Confidence 2 246999999975
No 168
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=98.66 E-value=9.8e-08 Score=84.00 Aligned_cols=79 Identities=22% Similarity=0.344 Sum_probs=67.0
Q ss_pred CCCEEEEEcCcccHHHHHHHHc---CCeEEEEeCCHHHHHHHHHHhhcCCCCCCeEEEEccccC-CCCCCCccccccccc
Q 018261 56 STDVILEIGPGTGNLTKKLLEA---GKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLK-TDLPYFDICVANIPY 131 (359)
Q Consensus 56 ~~~~VLDIGcGtG~lt~~La~~---~~~V~avDid~~~i~~a~~~~~~~~~~~~v~~i~~D~~~-~~l~~fD~VvsNlPy 131 (359)
....++|||||+|..+..|++. .....+.|++|.+++...+....+.. ++..++.|+.. +...+.|+++-|+||
T Consensus 43 ~~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~--~~~~V~tdl~~~l~~~~VDvLvfNPPY 120 (209)
T KOG3191|consen 43 NPEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRV--HIDVVRTDLLSGLRNESVDVLVFNPPY 120 (209)
T ss_pred CceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCC--ccceeehhHHhhhccCCccEEEECCCc
Confidence 3678999999999999999876 35689999999999999988877764 68899999876 333589999999999
Q ss_pred ccchH
Q 018261 132 QISSP 136 (359)
Q Consensus 132 ~i~s~ 136 (359)
-.+++
T Consensus 121 Vpt~~ 125 (209)
T KOG3191|consen 121 VPTSD 125 (209)
T ss_pred CcCCc
Confidence 98865
No 169
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=98.64 E-value=3.3e-07 Score=83.98 Aligned_cols=88 Identities=19% Similarity=0.217 Sum_probs=71.8
Q ss_pred HHHHHHHHHHcCCCCCCEEEEEcCcccHHHHHHHHc---CCeEEEEeCCHHHHHHHHHHhhcCCCCCCeEEEE-ccccCC
Q 018261 42 PLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEA---GKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQ-GDVLKT 117 (359)
Q Consensus 42 ~~v~~~iv~~~~~~~~~~VLDIGcGtG~lt~~La~~---~~~V~avDid~~~i~~a~~~~~~~~~~~~v~~i~-~D~~~~ 117 (359)
+.....+...+......+|||||++.|+-+..++.. ..++++||+++++++.|++++...++.++++++. +|+++.
T Consensus 45 ~e~g~~L~~L~~~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~ 124 (219)
T COG4122 45 PETGALLRLLARLSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDV 124 (219)
T ss_pred hhHHHHHHHHHHhcCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHH
Confidence 555555555556667899999999999999999875 3689999999999999999999999888899999 587653
Q ss_pred ----CCCCCccccccc
Q 018261 118 ----DLPYFDICVANI 129 (359)
Q Consensus 118 ----~l~~fD~VvsNl 129 (359)
..++||+|+...
T Consensus 125 l~~~~~~~fDliFIDa 140 (219)
T COG4122 125 LSRLLDGSFDLVFIDA 140 (219)
T ss_pred HHhccCCCccEEEEeC
Confidence 235899998753
No 170
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=98.62 E-value=6.4e-08 Score=88.28 Aligned_cols=132 Identities=25% Similarity=0.391 Sum_probs=92.9
Q ss_pred cccccccCCCcccccCHHHHHHHHHHcCCCCCCEEEEEcCcccHHHHHHHHcCC-eEEEEeCCHHHHHHHHHHhhcCC-C
Q 018261 26 GGISFHKSKGQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEAGK-MVIAVELDSRMVLELQRRFQSTP-Y 103 (359)
Q Consensus 26 ~~~~~~k~~GQ~fl~d~~v~~~iv~~~~~~~~~~VLDIGcGtG~lt~~La~~~~-~V~avDid~~~i~~a~~~~~~~~-~ 103 (359)
-|++..+..+.+=+.|. ..=++...+..+.+|||.|.|.|+.++..+++|+ +|+.||.||..++.|.-|-=... .
T Consensus 107 dGIrMhrt~~tdP~~Dt---~~Kv~~V~~~~G~rVLDtC~GLGYtAi~a~~rGA~~VitvEkdp~VLeLa~lNPwSr~l~ 183 (287)
T COG2521 107 DGIRMHRTKGTDPLEDT---LAKVELVKVKRGERVLDTCTGLGYTAIEALERGAIHVITVEKDPNVLELAKLNPWSRELF 183 (287)
T ss_pred ccEEEecccCcCcHHHH---HhhhheeccccCCEeeeeccCccHHHHHHHHcCCcEEEEEeeCCCeEEeeccCCCCcccc
Confidence 47777777776655432 2223445567799999999999999999999987 99999999999988876532211 2
Q ss_pred CCCeEEEEccccCC----CCCCCcccccccc-cccchHHHHHHHhcCchhhHHHHHHHHHHHHHHhccCCCeeEEee
Q 018261 104 SNRLKVIQGDVLKT----DLPYFDICVANIP-YQISSPLTFKLLFHQPAFRCAIIMFQKEFAMRLVAQPGDKLYCRL 175 (359)
Q Consensus 104 ~~~v~~i~~D~~~~----~l~~fD~VvsNlP-y~i~s~ii~~ll~~~~~~~~~~~~~qkE~a~Rlv~kpGg~~y~~l 175 (359)
+.+++++.||+.++ +-.+||+|+..+| |...+.+.. .-+-+|+.+ +++|||.+|.-.
T Consensus 184 ~~~i~iilGD~~e~V~~~~D~sfDaIiHDPPRfS~AgeLYs-------------eefY~El~R--iLkrgGrlFHYv 245 (287)
T COG2521 184 EIAIKIILGDAYEVVKDFDDESFDAIIHDPPRFSLAGELYS-------------EEFYRELYR--ILKRGGRLFHYV 245 (287)
T ss_pred ccccEEecccHHHHHhcCCccccceEeeCCCccchhhhHhH-------------HHHHHHHHH--HcCcCCcEEEEe
Confidence 33689999998763 3347999999998 334432211 112267764 899999887443
No 171
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=98.62 E-value=8.5e-07 Score=81.88 Aligned_cols=86 Identities=24% Similarity=0.296 Sum_probs=64.7
Q ss_pred CHHHHHHHHHHcCCCCCCEEEEEcCcccHHHHHHHHcCCeEEEEeCCHHHHHHHHHHhhcC-----------CCCCCeEE
Q 018261 41 NPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEAGKMVIAVELDSRMVLELQRRFQST-----------PYSNRLKV 109 (359)
Q Consensus 41 d~~v~~~iv~~~~~~~~~~VLDIGcGtG~lt~~La~~~~~V~avDid~~~i~~a~~~~~~~-----------~~~~~v~~ 109 (359)
++.+++.+ ..+.+.++.+||..|||.|.-...|++.|.+|+|||+|+.+++.+.+..... --..++++
T Consensus 29 np~L~~~~-~~l~~~~~~rvLvPgCGkg~D~~~LA~~G~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~ 107 (226)
T PRK13256 29 NEFLVKHF-SKLNINDSSVCLIPMCGCSIDMLFFLSKGVKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEI 107 (226)
T ss_pred CHHHHHHH-HhcCCCCCCeEEEeCCCChHHHHHHHhCCCcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEE
Confidence 45555554 3344556789999999999999999999999999999999999986632100 00237999
Q ss_pred EEccccCCCC-----CCCccccc
Q 018261 110 IQGDVLKTDL-----PYFDICVA 127 (359)
Q Consensus 110 i~~D~~~~~l-----~~fD~Vvs 127 (359)
+++|+++++. ..||.|+-
T Consensus 108 ~~gD~f~l~~~~~~~~~fD~VyD 130 (226)
T PRK13256 108 YVADIFNLPKIANNLPVFDIWYD 130 (226)
T ss_pred EEccCcCCCccccccCCcCeeee
Confidence 9999999863 35887654
No 172
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=98.58 E-value=3.2e-07 Score=80.84 Aligned_cols=89 Identities=20% Similarity=0.325 Sum_probs=68.2
Q ss_pred HHHHHHHHHcC---CCCCC-EEEEEcCcccHHHHHHHHcC--CeEEEEeCCHHHHHHHHHHhhcCCCCCCeEEEEccccC
Q 018261 43 LLVESIVQKAG---IKSTD-VILEIGPGTGNLTKKLLEAG--KMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLK 116 (359)
Q Consensus 43 ~v~~~iv~~~~---~~~~~-~VLDIGcGtG~lt~~La~~~--~~V~avDid~~~i~~a~~~~~~~~~~~~v~~i~~D~~~ 116 (359)
.++++++.... +.... +|||+|||.|.+...|++.+ ..++|||.++.+++.|+...+..++.+.|+|.+.|+.+
T Consensus 50 riv~wl~d~~~~~rv~~~A~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~ 129 (227)
T KOG1271|consen 50 RIVDWLKDLIVISRVSKQADRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITD 129 (227)
T ss_pred HHHHHHHhhhhhhhhcccccceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccC
Confidence 45555554443 44444 99999999999999999986 45999999999999998888877777669999999998
Q ss_pred CCC--CCCccccccccc
Q 018261 117 TDL--PYFDICVANIPY 131 (359)
Q Consensus 117 ~~l--~~fD~VvsNlPy 131 (359)
.++ ..||+|.---.|
T Consensus 130 ~~~~~~qfdlvlDKGT~ 146 (227)
T KOG1271|consen 130 PDFLSGQFDLVLDKGTL 146 (227)
T ss_pred CcccccceeEEeecCce
Confidence 543 268876554433
No 173
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=98.58 E-value=1.2e-07 Score=95.15 Aligned_cols=112 Identities=22% Similarity=0.245 Sum_probs=89.3
Q ss_pred cccccccCCCcccccCHHHHHHH----HHHcCCCCCCEEEEEcCcccHHHHHHHHcCCeEEEEeCCHHHHHHHHHHhhcC
Q 018261 26 GGISFHKSKGQHILKNPLLVESI----VQKAGIKSTDVILEIGPGTGNLTKKLLEAGKMVIAVELDSRMVLELQRRFQST 101 (359)
Q Consensus 26 ~~~~~~k~~GQ~fl~d~~v~~~i----v~~~~~~~~~~VLDIGcGtG~lt~~La~~~~~V~avDid~~~i~~a~~~~~~~ 101 (359)
.+++|+-+-|-.|-+|...++.+ =+.+++..+..+||+.||||.++..|++...+|+|||+++.+++.|+++...+
T Consensus 349 ~~ltF~iSp~AFFQ~Nt~~aevLys~i~e~~~l~~~k~llDv~CGTG~iglala~~~~~ViGvEi~~~aV~dA~~nA~~N 428 (534)
T KOG2187|consen 349 LGLTFRISPGAFFQTNTSAAEVLYSTIGEWAGLPADKTLLDVCCGTGTIGLALARGVKRVIGVEISPDAVEDAEKNAQIN 428 (534)
T ss_pred CCeEEEECCchhhccCcHHHHHHHHHHHHHhCCCCCcEEEEEeecCCceehhhhccccceeeeecChhhcchhhhcchhc
Confidence 37788899999999887666544 35678888899999999999999999999999999999999999999999998
Q ss_pred CCCCCeEEEEccccCCC---C----CCCc-ccccccccccchHHH
Q 018261 102 PYSNRLKVIQGDVLKTD---L----PYFD-ICVANIPYQISSPLT 138 (359)
Q Consensus 102 ~~~~~v~~i~~D~~~~~---l----~~fD-~VvsNlPy~i~s~ii 138 (359)
++. |.+|++|-++++- + +.-+ ++|.++|-.-....+
T Consensus 429 gis-Na~Fi~gqaE~~~~sl~~~~~~~~~~v~iiDPpR~Glh~~~ 472 (534)
T KOG2187|consen 429 GIS-NATFIVGQAEDLFPSLLTPCCDSETLVAIIDPPRKGLHMKV 472 (534)
T ss_pred Ccc-ceeeeecchhhccchhcccCCCCCceEEEECCCcccccHHH
Confidence 875 9999999666532 1 1223 567777764444333
No 174
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=98.57 E-value=4.1e-08 Score=89.34 Aligned_cols=80 Identities=20% Similarity=0.337 Sum_probs=62.8
Q ss_pred HHHHHHHHHHcCCCCCCEEEEEcCcccHHHHHHHHcCCeEEEEeCCHHHHHHHHHHhhcCCCCCCeEEEEcccc---C-C
Q 018261 42 PLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEAGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVL---K-T 117 (359)
Q Consensus 42 ~~v~~~iv~~~~~~~~~~VLDIGcGtG~lt~~La~~~~~V~avDid~~~i~~a~~~~~~~~~~~~v~~i~~D~~---~-~ 117 (359)
|..+..++..++..+-.++||+|||||..+..|.....+++|||||.+|++.|.++--.. .+.++|+. . .
T Consensus 111 P~~l~emI~~~~~g~F~~~lDLGCGTGL~G~~lR~~a~~ltGvDiS~nMl~kA~eKg~YD------~L~~Aea~~Fl~~~ 184 (287)
T COG4976 111 PELLAEMIGKADLGPFRRMLDLGCGTGLTGEALRDMADRLTGVDISENMLAKAHEKGLYD------TLYVAEAVLFLEDL 184 (287)
T ss_pred HHHHHHHHHhccCCccceeeecccCcCcccHhHHHHHhhccCCchhHHHHHHHHhccchH------HHHHHHHHHHhhhc
Confidence 677888888888877889999999999999999888899999999999999998863211 23344433 2 2
Q ss_pred CCCCCccccc
Q 018261 118 DLPYFDICVA 127 (359)
Q Consensus 118 ~l~~fD~Vvs 127 (359)
....||+|++
T Consensus 185 ~~er~DLi~A 194 (287)
T COG4976 185 TQERFDLIVA 194 (287)
T ss_pred cCCcccchhh
Confidence 3347999887
No 175
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=98.57 E-value=1.6e-07 Score=89.96 Aligned_cols=86 Identities=20% Similarity=0.360 Sum_probs=72.7
Q ss_pred CHHHHHHHHHHcCCCCCCEEEEEcCcccHHHHHHHHcC---CeEEEEeCCHHHHHHHHHHhhcCCCCCCeEEEEccccCC
Q 018261 41 NPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEAG---KMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKT 117 (359)
Q Consensus 41 d~~v~~~iv~~~~~~~~~~VLDIGcGtG~lt~~La~~~---~~V~avDid~~~i~~a~~~~~~~~~~~~v~~i~~D~~~~ 117 (359)
-|-+++.+++.+.+.++..+||.+||.|..|..+++.. .+|+|+|.|+.|+..+++++.. .++++++++|+.++
T Consensus 4 ~pVll~Evl~~L~~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~---~~ri~~i~~~f~~l 80 (296)
T PRK00050 4 IPVLLDEVVDALAIKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP---FGRFTLVHGNFSNL 80 (296)
T ss_pred ccccHHHHHHhhCCCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc---CCcEEEEeCCHHHH
Confidence 46688999999998899999999999999999999873 7899999999999999998865 24899999999764
Q ss_pred C------CCCCccccccc
Q 018261 118 D------LPYFDICVANI 129 (359)
Q Consensus 118 ~------l~~fD~VvsNl 129 (359)
. ...+|.|+.++
T Consensus 81 ~~~l~~~~~~vDgIl~DL 98 (296)
T PRK00050 81 KEVLAEGLGKVDGILLDL 98 (296)
T ss_pred HHHHHcCCCccCEEEECC
Confidence 2 12578777765
No 176
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=98.55 E-value=2.3e-07 Score=91.97 Aligned_cols=126 Identities=19% Similarity=0.223 Sum_probs=89.2
Q ss_pred cccCHHHHHHHHHHcCCCCCCEEEEEcCcccHHHHHHHHcCC-eEEEEeCCHHHHHHHHHHhhcCCCC-CCeEEEEcccc
Q 018261 38 ILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEAGK-MVIAVELDSRMVLELQRRFQSTPYS-NRLKVIQGDVL 115 (359)
Q Consensus 38 fl~d~~v~~~iv~~~~~~~~~~VLDIGcGtG~lt~~La~~~~-~V~avDid~~~i~~a~~~~~~~~~~-~~v~~i~~D~~ 115 (359)
|+.|.+..++.+.... .+++||++-|=||.++.+.+..|+ +|++||+|...+..|++|+..++++ .++.++++|++
T Consensus 201 fFlDqR~~R~~l~~~~--~GkrvLNlFsYTGgfSv~Aa~gGA~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf 278 (393)
T COG1092 201 FFLDQRDNRRALGELA--AGKRVLNLFSYTGGFSVHAALGGASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVF 278 (393)
T ss_pred eeHHhHHHHHHHhhhc--cCCeEEEecccCcHHHHHHHhcCCCceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHH
Confidence 4455555555554432 389999999999999999999886 9999999999999999999988864 46899999998
Q ss_pred CCC------CCCCcccccccccccchHH-HHHHHhcCchhhHHHHHHHHHHHHHHhccCCCeeEEe
Q 018261 116 KTD------LPYFDICVANIPYQISSPL-TFKLLFHQPAFRCAIIMFQKEFAMRLVAQPGDKLYCR 174 (359)
Q Consensus 116 ~~~------l~~fD~VvsNlPy~i~s~i-i~~ll~~~~~~~~~~~~~qkE~a~Rlv~kpGg~~y~~ 174 (359)
++- -..||+||.++|=..-++- .+...+..... ...+.+ +++|||.++..
T Consensus 279 ~~l~~~~~~g~~fDlIilDPPsF~r~k~~~~~~~rdy~~l--------~~~~~~-iL~pgG~l~~~ 335 (393)
T COG1092 279 KWLRKAERRGEKFDLIILDPPSFARSKKQEFSAQRDYKDL--------NDLALR-LLAPGGTLVTS 335 (393)
T ss_pred HHHHHHHhcCCcccEEEECCcccccCcccchhHHHHHHHH--------HHHHHH-HcCCCCEEEEE
Confidence 742 1279999999995544332 22332221111 122334 67888877543
No 177
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=98.54 E-value=2.9e-07 Score=84.44 Aligned_cols=47 Identities=17% Similarity=0.325 Sum_probs=41.8
Q ss_pred CCCCCEEEEEcCcccHHHHHHHHc--CCeEEEEeCCHHHHHHHHHHhhc
Q 018261 54 IKSTDVILEIGPGTGNLTKKLLEA--GKMVIAVELDSRMVLELQRRFQS 100 (359)
Q Consensus 54 ~~~~~~VLDIGcGtG~lt~~La~~--~~~V~avDid~~~i~~a~~~~~~ 100 (359)
...+..+|||||-+|.+|..+++. ...|+|||||+.++..|+++++.
T Consensus 56 ~f~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~ 104 (288)
T KOG2899|consen 56 WFEPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRF 104 (288)
T ss_pred ccCcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccc
Confidence 456778999999999999999987 46899999999999999998753
No 178
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=98.51 E-value=5.3e-07 Score=84.43 Aligned_cols=89 Identities=13% Similarity=0.060 Sum_probs=70.7
Q ss_pred CHHHHHHHHHHcCCCCCCEEEEEcCcccHHHHHHHHc---CCeEEEEeCCHHHHHHHHHHhhcCCCCCCeEEEEccccCC
Q 018261 41 NPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEA---GKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKT 117 (359)
Q Consensus 41 d~~v~~~iv~~~~~~~~~~VLDIGcGtG~lt~~La~~---~~~V~avDid~~~i~~a~~~~~~~~~~~~v~~i~~D~~~~ 117 (359)
.+...+.+...+......+|||||+++|+-|+.++.. ..+|+++|+++..+..|++++...++.++++++.+|+.+.
T Consensus 64 ~~~~g~lL~~l~~~~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~ 143 (247)
T PLN02589 64 SADEGQFLNMLLKLINAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPV 143 (247)
T ss_pred CHHHHHHHHHHHHHhCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHH
Confidence 4444444444444456689999999999999999875 4799999999999999999999888888999999998763
Q ss_pred C---------CCCCccccccc
Q 018261 118 D---------LPYFDICVANI 129 (359)
Q Consensus 118 ~---------l~~fD~VvsNl 129 (359)
- ...||+|+...
T Consensus 144 L~~l~~~~~~~~~fD~iFiDa 164 (247)
T PLN02589 144 LDQMIEDGKYHGTFDFIFVDA 164 (247)
T ss_pred HHHHHhccccCCcccEEEecC
Confidence 1 14799998754
No 179
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=98.48 E-value=3.1e-07 Score=89.28 Aligned_cols=107 Identities=18% Similarity=0.272 Sum_probs=85.4
Q ss_pred ccccccccCCCcccccCHHHHHHHHHHcCCCCCCEEEEEcCcccHHHHHHHHcCCe-EEEEeCCHHHHHHHHHHhhcCCC
Q 018261 25 AGGISFHKSKGQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEAGKM-VIAVELDSRMVLELQRRFQSTPY 103 (359)
Q Consensus 25 ~~~~~~~k~~GQ~fl~d~~v~~~iv~~~~~~~~~~VLDIGcGtG~lt~~La~~~~~-V~avDid~~~i~~a~~~~~~~~~ 103 (359)
++|..++-.+.+-|+...+..++.--+-...+|.+|||+=+|.|.+|+.+|+.+.. |+|+|++|.++..+++|+..+++
T Consensus 157 E~G~~f~vD~~Kv~Fsprl~~ER~Rva~~v~~GE~V~DmFAGVGpfsi~~Ak~g~~~V~A~diNP~A~~~L~eNi~LN~v 236 (341)
T COG2520 157 ENGCRFKVDVAKVYFSPRLSTERARVAELVKEGETVLDMFAGVGPFSIPIAKKGRPKVYAIDINPDAVEYLKENIRLNKV 236 (341)
T ss_pred cCCEEEEEchHHeEECCCchHHHHHHHhhhcCCCEEEEccCCcccchhhhhhcCCceEEEEecCHHHHHHHHHHHHhcCc
Confidence 34666666666666665555544322222456999999999999999999999755 99999999999999999999988
Q ss_pred CCCeEEEEccccCCCC--CCCccccccccc
Q 018261 104 SNRLKVIQGDVLKTDL--PYFDICVANIPY 131 (359)
Q Consensus 104 ~~~v~~i~~D~~~~~l--~~fD~VvsNlPy 131 (359)
.+.+..+++|+.++.. ..+|.|+.|+|.
T Consensus 237 ~~~v~~i~gD~rev~~~~~~aDrIim~~p~ 266 (341)
T COG2520 237 EGRVEPILGDAREVAPELGVADRIIMGLPK 266 (341)
T ss_pred cceeeEEeccHHHhhhccccCCEEEeCCCC
Confidence 8779999999988653 469999999986
No 180
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=98.47 E-value=4.3e-07 Score=83.36 Aligned_cols=99 Identities=20% Similarity=0.199 Sum_probs=70.1
Q ss_pred ccccccCCCcccccCHHHHHHHHHHcCCC-CCC--EEEEEcCcccHHHHHHHHcC----CeEEEEeCCHHHHHHHHHHhh
Q 018261 27 GISFHKSKGQHILKNPLLVESIVQKAGIK-STD--VILEIGPGTGNLTKKLLEAG----KMVIAVELDSRMVLELQRRFQ 99 (359)
Q Consensus 27 ~~~~~k~~GQ~fl~d~~v~~~iv~~~~~~-~~~--~VLDIGcGtG~lt~~La~~~----~~V~avDid~~~i~~a~~~~~ 99 (359)
--.+.+.....|+.|++++.+=...+... ... +|||||||.|+....|++.. .+|+|+|.+|++++..+++..
T Consensus 39 wD~fy~~~~~rFfkdR~wL~~Efpel~~~~~~~~~~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~ 118 (264)
T KOG2361|consen 39 WDTFYKIHENRFFKDRNWLLREFPELLPVDEKSAETILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSG 118 (264)
T ss_pred hhhhhhhccccccchhHHHHHhhHHhhCccccChhhheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccc
Confidence 34556667778999999887766554332 222 79999999999999999762 579999999999999998865
Q ss_pred cCCCCCCeEEEEccccCCCC------CCCccccc
Q 018261 100 STPYSNRLKVIQGDVLKTDL------PYFDICVA 127 (359)
Q Consensus 100 ~~~~~~~v~~i~~D~~~~~l------~~fD~Vvs 127 (359)
... .++.....|+..-.+ .++|.+++
T Consensus 119 ~~e--~~~~afv~Dlt~~~~~~~~~~~svD~it~ 150 (264)
T KOG2361|consen 119 YDE--SRVEAFVWDLTSPSLKEPPEEGSVDIITL 150 (264)
T ss_pred cch--hhhcccceeccchhccCCCCcCccceEEE
Confidence 543 355555555543221 25776655
No 181
>PLN02366 spermidine synthase
Probab=98.47 E-value=2.3e-06 Score=82.68 Aligned_cols=91 Identities=13% Similarity=0.237 Sum_probs=67.7
Q ss_pred HHHHHHHHHHcC---CCCCCEEEEEcCcccHHHHHHHHc--CCeEEEEeCCHHHHHHHHHHhhcC--CC-CCCeEEEEcc
Q 018261 42 PLLVESIVQKAG---IKSTDVILEIGPGTGNLTKKLLEA--GKMVIAVELDSRMVLELQRRFQST--PY-SNRLKVIQGD 113 (359)
Q Consensus 42 ~~v~~~iv~~~~---~~~~~~VLDIGcGtG~lt~~La~~--~~~V~avDid~~~i~~a~~~~~~~--~~-~~~v~~i~~D 113 (359)
......++..+. .....+||+||||.|.+...+++. ..+|+.||+|+.+++.+++.+... ++ +.+++++.+|
T Consensus 74 e~~Y~e~l~h~~l~~~~~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~D 153 (308)
T PLN02366 74 ECAYQEMITHLPLCSIPNPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGD 153 (308)
T ss_pred HHHHHHHHHHHHHhhCCCCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEECh
Confidence 334455544332 346789999999999999999987 368999999999999999987532 11 3489999999
Q ss_pred ccCC----CCCCCcccccccccc
Q 018261 114 VLKT----DLPYFDICVANIPYQ 132 (359)
Q Consensus 114 ~~~~----~l~~fD~VvsNlPy~ 132 (359)
+.++ +-..||+|+++.+-.
T Consensus 154 a~~~l~~~~~~~yDvIi~D~~dp 176 (308)
T PLN02366 154 GVEFLKNAPEGTYDAIIVDSSDP 176 (308)
T ss_pred HHHHHhhccCCCCCEEEEcCCCC
Confidence 7543 223799999987543
No 182
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=98.46 E-value=9.3e-07 Score=81.35 Aligned_cols=86 Identities=24% Similarity=0.317 Sum_probs=63.1
Q ss_pred CHHHHHHHHHHcCCCCCCEEEEEcCcccHHHHHHHHcCCeEEEEeCCHHHHHHHHHHhhc-C-----C-----CCCCeEE
Q 018261 41 NPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEAGKMVIAVELDSRMVLELQRRFQS-T-----P-----YSNRLKV 109 (359)
Q Consensus 41 d~~v~~~iv~~~~~~~~~~VLDIGcGtG~lt~~La~~~~~V~avDid~~~i~~a~~~~~~-~-----~-----~~~~v~~ 109 (359)
+|.+.+ .+..+...++.+||..|||.|.-...|+++|.+|+|+|+|+.+++.+.+.... . . -.+++++
T Consensus 23 ~p~L~~-~~~~l~~~~~~rvLvPgCG~g~D~~~La~~G~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~ 101 (218)
T PF05724_consen 23 NPALVE-YLDSLALKPGGRVLVPGCGKGYDMLWLAEQGHDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITI 101 (218)
T ss_dssp THHHHH-HHHHHTTSTSEEEEETTTTTSCHHHHHHHTTEEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEE
T ss_pred CHHHHH-HHHhcCCCCCCeEEEeCCCChHHHHHHHHCCCeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEE
Confidence 444444 44446677788999999999999999999999999999999999998543221 0 0 1247899
Q ss_pred EEccccCCCCC---CCccccc
Q 018261 110 IQGDVLKTDLP---YFDICVA 127 (359)
Q Consensus 110 i~~D~~~~~l~---~fD~Vvs 127 (359)
+++|+++++.. .||+|+=
T Consensus 102 ~~gDfF~l~~~~~g~fD~iyD 122 (218)
T PF05724_consen 102 YCGDFFELPPEDVGKFDLIYD 122 (218)
T ss_dssp EES-TTTGGGSCHHSEEEEEE
T ss_pred EEcccccCChhhcCCceEEEE
Confidence 99999987643 5887643
No 183
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=98.44 E-value=6.5e-07 Score=80.96 Aligned_cols=107 Identities=22% Similarity=0.335 Sum_probs=70.3
Q ss_pred CEEEEEcCcccHHHHHHHHc--CCeEEEEeCCHHHHHHHHHHhhcCCCCCCeEEEEccccCC-----CCCCCcccccccc
Q 018261 58 DVILEIGPGTGNLTKKLLEA--GKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKT-----DLPYFDICVANIP 130 (359)
Q Consensus 58 ~~VLDIGcGtG~lt~~La~~--~~~V~avDid~~~i~~a~~~~~~~~~~~~v~~i~~D~~~~-----~l~~fD~VvsNlP 130 (359)
..+||||||.|.++..+|.. ...++|||+....+..+.++....++ .|+.++++|+..+ +..++|.|..|.|
T Consensus 19 ~l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l-~Nv~~~~~da~~~l~~~~~~~~v~~i~i~FP 97 (195)
T PF02390_consen 19 PLILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGL-KNVRFLRGDARELLRRLFPPGSVDRIYINFP 97 (195)
T ss_dssp EEEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTT-SSEEEEES-CTTHHHHHSTTTSEEEEEEES-
T ss_pred CeEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhcc-cceEEEEccHHHHHhhcccCCchheEEEeCC
Confidence 38999999999999999987 58999999999999999888876665 3999999999872 1236788888876
Q ss_pred cccchHHHHHHHhcCc-hhhHHHHHHHHHHHHHHhccCCCeeEEee
Q 018261 131 YQISSPLTFKLLFHQP-AFRCAIIMFQKEFAMRLVAQPGDKLYCRL 175 (359)
Q Consensus 131 y~i~s~ii~~ll~~~~-~~~~~~~~~qkE~a~Rlv~kpGg~~y~~l 175 (359)
=-|... -++.. .....++ .++++ +++|||.++...
T Consensus 98 DPWpK~-----rH~krRl~~~~fl---~~~~~--~L~~gG~l~~~T 133 (195)
T PF02390_consen 98 DPWPKK-----RHHKRRLVNPEFL---ELLAR--VLKPGGELYFAT 133 (195)
T ss_dssp ----SG-----GGGGGSTTSHHHH---HHHHH--HEEEEEEEEEEE
T ss_pred CCCccc-----chhhhhcCCchHH---HHHHH--HcCCCCEEEEEe
Confidence 333211 01111 1111111 34443 789999987654
No 184
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=98.43 E-value=1.3e-06 Score=82.81 Aligned_cols=79 Identities=18% Similarity=0.297 Sum_probs=61.6
Q ss_pred CCCCEEEEEcCcccHHHHHHHHcC--CeEEEEeCCHHHHHHHHHHhhcCC---CCCCeEEEEccccCC---CCCCCcccc
Q 018261 55 KSTDVILEIGPGTGNLTKKLLEAG--KMVIAVELDSRMVLELQRRFQSTP---YSNRLKVIQGDVLKT---DLPYFDICV 126 (359)
Q Consensus 55 ~~~~~VLDIGcGtG~lt~~La~~~--~~V~avDid~~~i~~a~~~~~~~~---~~~~v~~i~~D~~~~---~l~~fD~Vv 126 (359)
..+.+||+||||+|.++..+++.. .+|+++|+|+.+++.+++.+.... -..+++++.+|+.+. ....||+|+
T Consensus 71 ~~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvIi 150 (270)
T TIGR00417 71 PNPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVII 150 (270)
T ss_pred CCCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEEE
Confidence 345699999999999999998773 689999999999999999764321 124789999998652 124799999
Q ss_pred ccccccc
Q 018261 127 ANIPYQI 133 (359)
Q Consensus 127 sNlPy~i 133 (359)
++.+..+
T Consensus 151 ~D~~~~~ 157 (270)
T TIGR00417 151 VDSTDPV 157 (270)
T ss_pred EeCCCCC
Confidence 9887543
No 185
>PRK03612 spermidine synthase; Provisional
Probab=98.42 E-value=6.8e-07 Score=92.40 Aligned_cols=79 Identities=20% Similarity=0.307 Sum_probs=62.6
Q ss_pred CCCCEEEEEcCcccHHHHHHHHcC--CeEEEEeCCHHHHHHHHHHh--hcC---CC-CCCeEEEEccccCCC---CCCCc
Q 018261 55 KSTDVILEIGPGTGNLTKKLLEAG--KMVIAVELDSRMVLELQRRF--QST---PY-SNRLKVIQGDVLKTD---LPYFD 123 (359)
Q Consensus 55 ~~~~~VLDIGcGtG~lt~~La~~~--~~V~avDid~~~i~~a~~~~--~~~---~~-~~~v~~i~~D~~~~~---l~~fD 123 (359)
.++.+|||||||+|..+..+++.. .+|++||+|+++++.++++. ... .. +.+++++++|+.+.- ...||
T Consensus 296 ~~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~fD 375 (521)
T PRK03612 296 ARPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKFD 375 (521)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCCC
Confidence 456899999999999999999873 69999999999999999842 211 11 248999999987631 24799
Q ss_pred cccccccccc
Q 018261 124 ICVANIPYQI 133 (359)
Q Consensus 124 ~VvsNlPy~i 133 (359)
+|++|+|...
T Consensus 376 vIi~D~~~~~ 385 (521)
T PRK03612 376 VIIVDLPDPS 385 (521)
T ss_pred EEEEeCCCCC
Confidence 9999987654
No 186
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=98.42 E-value=3.1e-06 Score=83.42 Aligned_cols=137 Identities=18% Similarity=0.223 Sum_probs=94.9
Q ss_pred cCHHHHHHHHHHcCCCCCCEEEEEcCcccHHHHHHHHcC----CeEEEEeCCHHHHHHHHHHhhcCCCCCCeEEEEcccc
Q 018261 40 KNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEAG----KMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVL 115 (359)
Q Consensus 40 ~d~~v~~~iv~~~~~~~~~~VLDIGcGtG~lt~~La~~~----~~V~avDid~~~i~~a~~~~~~~~~~~~v~~i~~D~~ 115 (359)
.+...-...+..+++.++.+|||++++.|.=|.++++.. ..|+|+|+|+.-+..+++++...++. |+.+++.|..
T Consensus 140 vQd~sS~l~a~~L~p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~-nv~~~~~d~~ 218 (355)
T COG0144 140 VQDEASQLPALVLDPKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVR-NVIVVNKDAR 218 (355)
T ss_pred EcCHHHHHHHHHcCCCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCC-ceEEEecccc
Confidence 333334444567888999999999999999999999873 45799999999999999999998875 6888898876
Q ss_pred CCC---CC--CCcccccccccccchHH----HHHHHhcCchhhHHHHHHHHHHH---HHHhccCCCee-EEeecchh
Q 018261 116 KTD---LP--YFDICVANIPYQISSPL----TFKLLFHQPAFRCAIIMFQKEFA---MRLVAQPGDKL-YCRLSVNT 179 (359)
Q Consensus 116 ~~~---l~--~fD~VvsNlPy~i~s~i----i~~ll~~~~~~~~~~~~~qkE~a---~Rlv~kpGg~~-y~~lsv~~ 179 (359)
.+. .. .||.|+...|..-+.-+ -.++..+. .--..+.-+|+++- .+ +++|||.+ |+++|+..
T Consensus 219 ~~~~~~~~~~~fD~iLlDaPCSg~G~irr~Pd~~~~~~~-~~i~~l~~lQ~~iL~~a~~-~lk~GG~LVYSTCS~~~ 293 (355)
T COG0144 219 RLAELLPGGEKFDRILLDAPCSGTGVIRRDPDVKWRRTP-EDIAELAKLQKEILAAALK-LLKPGGVLVYSTCSLTP 293 (355)
T ss_pred cccccccccCcCcEEEECCCCCCCcccccCccccccCCH-HHHHHHHHHHHHHHHHHHH-hcCCCCEEEEEccCCch
Confidence 543 11 49999999997755321 11111111 11122334555443 33 45888875 99998864
No 187
>PRK01581 speE spermidine synthase; Validated
Probab=98.41 E-value=2e-06 Score=84.25 Aligned_cols=78 Identities=21% Similarity=0.317 Sum_probs=61.0
Q ss_pred CCCCCEEEEEcCcccHHHHHHHHcC--CeEEEEeCCHHHHHHHHHH--hh---cCC-CCCCeEEEEccccCCC---CCCC
Q 018261 54 IKSTDVILEIGPGTGNLTKKLLEAG--KMVIAVELDSRMVLELQRR--FQ---STP-YSNRLKVIQGDVLKTD---LPYF 122 (359)
Q Consensus 54 ~~~~~~VLDIGcGtG~lt~~La~~~--~~V~avDid~~~i~~a~~~--~~---~~~-~~~~v~~i~~D~~~~~---l~~f 122 (359)
.....+||+||||+|..+..+++.. .+|++||+|+++++.|++. +. ... -+.+++++.+|+.++- ...|
T Consensus 148 h~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~Y 227 (374)
T PRK01581 148 VIDPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSLY 227 (374)
T ss_pred CCCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCCc
Confidence 3456799999999999999998864 7999999999999999962 11 111 1358999999998632 2379
Q ss_pred ccccccccc
Q 018261 123 DICVANIPY 131 (359)
Q Consensus 123 D~VvsNlPy 131 (359)
|+|++++|-
T Consensus 228 DVIIvDl~D 236 (374)
T PRK01581 228 DVIIIDFPD 236 (374)
T ss_pred cEEEEcCCC
Confidence 999999864
No 188
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=98.38 E-value=3.7e-06 Score=78.45 Aligned_cols=119 Identities=18% Similarity=0.266 Sum_probs=84.9
Q ss_pred CCCcccccCHHHHHHHHHHcC-----CCCCCEEEEEcCcccHHHHHHHHcCCeEEEEeCCHHHHHHHHHHhhcCCCCCCe
Q 018261 33 SKGQHILKNPLLVESIVQKAG-----IKSTDVILEIGPGTGNLTKKLLEAGKMVIAVELDSRMVLELQRRFQSTPYSNRL 107 (359)
Q Consensus 33 ~~GQ~fl~d~~v~~~iv~~~~-----~~~~~~VLDIGcGtG~lt~~La~~~~~V~avDid~~~i~~a~~~~~~~~~~~~v 107 (359)
+.|.-|+-+..-.++++.... -....++||||+|.|..|..++..-.+|++.|.|+.|...++++ ++
T Consensus 66 gRG~MFvfS~~Q~~~LL~~~~~~~~~~~~~~~lLDlGAGdG~VT~~l~~~f~~v~aTE~S~~Mr~rL~~k--------g~ 137 (265)
T PF05219_consen 66 GRGSMFVFSEEQFRKLLRISGFSWNPDWKDKSLLDLGAGDGEVTERLAPLFKEVYATEASPPMRWRLSKK--------GF 137 (265)
T ss_pred cCCcEEEecHHHHHHHhhhhccCCCCcccCCceEEecCCCcHHHHHHHhhcceEEeecCCHHHHHHHHhC--------CC
Confidence 567788888888888877552 12456899999999999999998888999999999998887774 45
Q ss_pred EEEEccccCCCCCCCcccccccccccchHHHHHHHhcCchhhHHHHHHHHHHHHHHhccCCCeeEEeec
Q 018261 108 KVIQGDVLKTDLPYFDICVANIPYQISSPLTFKLLFHQPAFRCAIIMFQKEFAMRLVAQPGDKLYCRLS 176 (359)
Q Consensus 108 ~~i~~D~~~~~l~~fD~VvsNlPy~i~s~ii~~ll~~~~~~~~~~~~~qkE~a~Rlv~kpGg~~y~~ls 176 (359)
+++..|-..-....||+|.| +.+|.+...+...+ +++ |..++|+|.+..++.
T Consensus 138 ~vl~~~~w~~~~~~fDvIsc-----------LNvLDRc~~P~~LL----~~i--~~~l~p~G~lilAvV 189 (265)
T PF05219_consen 138 TVLDIDDWQQTDFKFDVISC-----------LNVLDRCDRPLTLL----RDI--RRALKPNGRLILAVV 189 (265)
T ss_pred eEEehhhhhccCCceEEEee-----------hhhhhccCCHHHHH----HHH--HHHhCCCCEEEEEEE
Confidence 55544433211236998877 45666655555444 444 337889998876543
No 189
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=98.37 E-value=5.7e-07 Score=79.63 Aligned_cols=72 Identities=22% Similarity=0.347 Sum_probs=64.1
Q ss_pred CCEEEEEcCcccHHHHHHHHcCCeEEEEeCCHHHHHHHHHHhhcCCCCCCeEEEEccccCCCCCCCccccccc
Q 018261 57 TDVILEIGPGTGNLTKKLLEAGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTDLPYFDICVANI 129 (359)
Q Consensus 57 ~~~VLDIGcGtG~lt~~La~~~~~V~avDid~~~i~~a~~~~~~~~~~~~v~~i~~D~~~~~l~~fD~VvsNl 129 (359)
.+.+.|+|+|+|.++...++.+.+|+|||.||.....|.+|+.-.+. .|++++.+|+.+.++...|+|+|-+
T Consensus 33 ~d~~~DLGaGsGiLs~~Aa~~A~rViAiE~dPk~a~~a~eN~~v~g~-~n~evv~gDA~~y~fe~ADvvicEm 104 (252)
T COG4076 33 EDTFADLGAGSGILSVVAAHAAERVIAIEKDPKRARLAEENLHVPGD-VNWEVVVGDARDYDFENADVVICEM 104 (252)
T ss_pred hhceeeccCCcchHHHHHHhhhceEEEEecCcHHHHHhhhcCCCCCC-cceEEEecccccccccccceeHHHH
Confidence 47899999999999999998889999999999999999999755543 4999999999999988889998854
No 190
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=98.31 E-value=3.5e-06 Score=82.20 Aligned_cols=107 Identities=16% Similarity=0.241 Sum_probs=68.5
Q ss_pred CCCEEEEEcCcccHHHHHHHHc-CCeEEEEeCCHHHHHHHHHHhhc---------CCCCCCeEEEEccccCCC------C
Q 018261 56 STDVILEIGPGTGNLTKKLLEA-GKMVIAVELDSRMVLELQRRFQS---------TPYSNRLKVIQGDVLKTD------L 119 (359)
Q Consensus 56 ~~~~VLDIGcGtG~lt~~La~~-~~~V~avDid~~~i~~a~~~~~~---------~~~~~~v~~i~~D~~~~~------l 119 (359)
++.+|||||||-|.-...+... ...++|+||+...++.|+++... ....-...++.+|..... .
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~~ 141 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKAKIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLPP 141 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSSS
T ss_pred CCCeEEEecCCCchhHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhccc
Confidence 6789999999999988777766 47999999999999999999821 111124677888886432 2
Q ss_pred C--CCcccccccccc--cchHHHHHHHhcCchhhHHHHHHHHHHHHHHhccCCCeeEEeecc
Q 018261 120 P--YFDICVANIPYQ--ISSPLTFKLLFHQPAFRCAIIMFQKEFAMRLVAQPGDKLYCRLSV 177 (359)
Q Consensus 120 ~--~fD~VvsNlPy~--i~s~ii~~ll~~~~~~~~~~~~~qkE~a~Rlv~kpGg~~y~~lsv 177 (359)
+ .||+|-|-..+| ..+.-.. +.++ +.++. .++|||.+++++.-
T Consensus 142 ~~~~FDvVScQFalHY~Fese~~a---------r~~l----~Nvs~--~Lk~GG~FIgT~~d 188 (331)
T PF03291_consen 142 RSRKFDVVSCQFALHYAFESEEKA---------RQFL----KNVSS--LLKPGGYFIGTTPD 188 (331)
T ss_dssp TTS-EEEEEEES-GGGGGSSHHHH---------HHHH----HHHHH--TEEEEEEEEEEEE-
T ss_pred cCCCcceeehHHHHHHhcCCHHHH---------HHHH----HHHHH--hcCCCCEEEEEecC
Confidence 2 688877654333 3332211 1111 44444 78999999998753
No 191
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=98.30 E-value=1.9e-06 Score=79.20 Aligned_cols=91 Identities=14% Similarity=0.161 Sum_probs=63.0
Q ss_pred HHHHHHHHHHcCCCCCCEEEEEcCcccHHHHHHHHcCCeEEEEeCCHHHHHHHHHHhhcCCCCCCeEEEEccccCCC--C
Q 018261 42 PLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEAGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTD--L 119 (359)
Q Consensus 42 ~~v~~~iv~~~~~~~~~~VLDIGcGtG~lt~~La~~~~~V~avDid~~~i~~a~~~~~~~~~~~~v~~i~~D~~~~~--l 119 (359)
-.+...|...-. ....++|+|||+|.-++.+++.-.+|+|+|+++.|+..|++.....-......+...+..++. .
T Consensus 21 tdw~~~ia~~~~--~h~~a~DvG~G~Gqa~~~iae~~k~VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L~g~e 98 (261)
T KOG3010|consen 21 TDWFKKIASRTE--GHRLAWDVGTGNGQAARGIAEHYKEVIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVDLLGGE 98 (261)
T ss_pred HHHHHHHHhhCC--CcceEEEeccCCCcchHHHHHhhhhheeecCCHHHHHHhhcCCCcccccCCccccccccccccCCC
Confidence 345555554432 223899999999988888888888999999999999999987643322223444444555444 3
Q ss_pred CCCcccccccccccc
Q 018261 120 PYFDICVANIPYQIS 134 (359)
Q Consensus 120 ~~fD~VvsNlPy~i~ 134 (359)
.+.|+|++.-.+||.
T Consensus 99 ~SVDlI~~Aqa~HWF 113 (261)
T KOG3010|consen 99 ESVDLITAAQAVHWF 113 (261)
T ss_pred cceeeehhhhhHHhh
Confidence 379999987766655
No 192
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=98.27 E-value=1.9e-05 Score=68.97 Aligned_cols=75 Identities=17% Similarity=0.216 Sum_probs=52.8
Q ss_pred EEEeCCHHHHHHHHHHhhcCC--CCCCeEEEEccccCCCCC--CCcccccccccccchHHHHHHHhcCchhhHHHHHHHH
Q 018261 82 IAVELDSRMVLELQRRFQSTP--YSNRLKVIQGDVLKTDLP--YFDICVANIPYQISSPLTFKLLFHQPAFRCAIIMFQK 157 (359)
Q Consensus 82 ~avDid~~~i~~a~~~~~~~~--~~~~v~~i~~D~~~~~l~--~fD~VvsNlPy~i~s~ii~~ll~~~~~~~~~~~~~qk 157 (359)
+|+|+|+.|++.|+++..... ...+++++++|+.+++++ .||+|+++.-+ .+..+...++ +
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~v~~~~~l-----------~~~~d~~~~l----~ 65 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPFDDCEFDAVTMGYGL-----------RNVVDRLRAM----K 65 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCCCCCCeeEEEecchh-----------hcCCCHHHHH----H
Confidence 489999999999987764221 123799999999998765 69999986532 2223333333 5
Q ss_pred HHHHHHhccCCCeeEE
Q 018261 158 EFAMRLVAQPGDKLYC 173 (359)
Q Consensus 158 E~a~Rlv~kpGg~~y~ 173 (359)
|+.+ +++|||.++.
T Consensus 66 ei~r--vLkpGG~l~i 79 (160)
T PLN02232 66 EMYR--VLKPGSRVSI 79 (160)
T ss_pred HHHH--HcCcCeEEEE
Confidence 6653 8899998763
No 193
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=98.26 E-value=1.4e-05 Score=74.60 Aligned_cols=89 Identities=19% Similarity=0.301 Sum_probs=78.6
Q ss_pred HHHHHHHcCCCCCCEEEEEcCcccHHHHHHHHcC---CeEEEEeCCHHHHHHHHHHhhcCCCCCCeEEEEccccCCCCC-
Q 018261 45 VESIVQKAGIKSTDVILEIGPGTGNLTKKLLEAG---KMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTDLP- 120 (359)
Q Consensus 45 ~~~iv~~~~~~~~~~VLDIGcGtG~lt~~La~~~---~~V~avDid~~~i~~a~~~~~~~~~~~~v~~i~~D~~~~~l~- 120 (359)
+..|+..+++.++.+|||-|+|+|.++.++++.. .+++.+|+.....+.|.+.++.+++.+++++.+-|+....+.
T Consensus 94 ia~I~~~L~i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDVc~~GF~~ 173 (314)
T KOG2915|consen 94 IAMILSMLEIRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDVCGSGFLI 173 (314)
T ss_pred HHHHHHHhcCCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEeecccCCccc
Confidence 4667888999999999999999999999999874 799999999999999999999999989999999999875443
Q ss_pred ---CCccccccccccc
Q 018261 121 ---YFDICVANIPYQI 133 (359)
Q Consensus 121 ---~fD~VvsNlPy~i 133 (359)
.+|.|+..+|--|
T Consensus 174 ks~~aDaVFLDlPaPw 189 (314)
T KOG2915|consen 174 KSLKADAVFLDLPAPW 189 (314)
T ss_pred cccccceEEEcCCChh
Confidence 5899999887544
No 194
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=98.26 E-value=4.2e-06 Score=80.08 Aligned_cols=95 Identities=16% Similarity=0.212 Sum_probs=55.1
Q ss_pred HHHHHHHHHcCCCC-----CCEEEEEcCcccHHHHHHHHc--CCeEEEEeCCHHHHHHHHHHhhcC-CCCCCeEEEEcc-
Q 018261 43 LLVESIVQKAGIKS-----TDVILEIGPGTGNLTKKLLEA--GKMVIAVELDSRMVLELQRRFQST-PYSNRLKVIQGD- 113 (359)
Q Consensus 43 ~v~~~iv~~~~~~~-----~~~VLDIGcGtG~lt~~La~~--~~~V~avDid~~~i~~a~~~~~~~-~~~~~v~~i~~D- 113 (359)
+.+..|.+.+.... .-++||||||.-++--.|..+ +.+++|.|||+..++.|++++..+ .+..+|+++...
T Consensus 84 nYi~~i~DlL~~~~~~~~~~v~glDIGTGAscIYpLLg~~~~~W~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~~~~~ 163 (299)
T PF05971_consen 84 NYIHWIADLLASSNPGIPEKVRGLDIGTGASCIYPLLGAKLYGWSFVATDIDPKSLESARENVERNPNLESRIELRKQKN 163 (299)
T ss_dssp HHHHHHHHHHT--TCGCS---EEEEES-TTTTHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEEE--S
T ss_pred HHHHHHHHHhhccccccccceEeecCCccHHHHHHHHhhhhcCCeEEEecCCHHHHHHHHHHHHhccccccceEEEEcCC
Confidence 34455555544322 357999999998765444433 899999999999999999999998 788899997663
Q ss_pred ---ccCCC---CCCCcccccccccccchHH
Q 018261 114 ---VLKTD---LPYFDICVANIPYQISSPL 137 (359)
Q Consensus 114 ---~~~~~---l~~fD~VvsNlPy~i~s~i 137 (359)
++..- -..||.++||+|||-+..-
T Consensus 164 ~~~i~~~i~~~~e~~dftmCNPPFy~s~~e 193 (299)
T PF05971_consen 164 PDNIFDGIIQPNERFDFTMCNPPFYSSQEE 193 (299)
T ss_dssp T-SSTTTSTT--S-EEEEEE-----SS---
T ss_pred ccccchhhhcccceeeEEecCCccccChhh
Confidence 22211 1269999999999977543
No 195
>KOG2730 consensus Methylase [General function prediction only]
Probab=98.25 E-value=8.1e-07 Score=80.47 Aligned_cols=101 Identities=20% Similarity=0.267 Sum_probs=80.9
Q ss_pred CCcccccCHHHHHHHHHHcCCC-CCCEEEEEcCcccHHHHHHHHcCCeEEEEeCCHHHHHHHHHHhhcCCCCCCeEEEEc
Q 018261 34 KGQHILKNPLLVESIVQKAGIK-STDVILEIGPGTGNLTKKLLEAGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQG 112 (359)
Q Consensus 34 ~GQ~fl~d~~v~~~iv~~~~~~-~~~~VLDIGcGtG~lt~~La~~~~~V~avDid~~~i~~a~~~~~~~~~~~~v~~i~~ 112 (359)
-||...+...+...|+...... ....|+|.-||-|..|...+..+..|++||+||.-+..|++|++-+++.++++|++|
T Consensus 71 e~wfsvTpe~ia~~iA~~v~~~~~~~~iidaf~g~gGntiqfa~~~~~VisIdiDPikIa~AkhNaeiYGI~~rItFI~G 150 (263)
T KOG2730|consen 71 EGWFSVTPEKIAEHIANRVVACMNAEVIVDAFCGVGGNTIQFALQGPYVIAIDIDPVKIACARHNAEVYGVPDRITFICG 150 (263)
T ss_pred cceEEeccHHHHHHHHHHHHHhcCcchhhhhhhcCCchHHHHHHhCCeEEEEeccHHHHHHHhccceeecCCceeEEEec
Confidence 3566667777777776654322 556899999999999999999999999999999999999999999999889999999
Q ss_pred cccCCC----CC--CCcccccccccccc
Q 018261 113 DVLKTD----LP--YFDICVANIPYQIS 134 (359)
Q Consensus 113 D~~~~~----l~--~fD~VvsNlPy~i~ 134 (359)
|++++- +. .+|+|+..+|+.-.
T Consensus 151 D~ld~~~~lq~~K~~~~~vf~sppwggp 178 (263)
T KOG2730|consen 151 DFLDLASKLKADKIKYDCVFLSPPWGGP 178 (263)
T ss_pred hHHHHHHHHhhhhheeeeeecCCCCCCc
Confidence 998742 11 35677777775543
No 196
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=98.22 E-value=2.7e-06 Score=81.10 Aligned_cols=120 Identities=18% Similarity=0.288 Sum_probs=82.1
Q ss_pred HHHHHHHHHcCCCCCCEEEEEcCcccHHHHHHHHcC-CeEEEEeCCHHHHHHHHHHhhcCC-----CCCCeEEEEccccC
Q 018261 43 LLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEAG-KMVIAVELDSRMVLELQRRFQSTP-----YSNRLKVIQGDVLK 116 (359)
Q Consensus 43 ~v~~~iv~~~~~~~~~~VLDIGcGtG~lt~~La~~~-~~V~avDid~~~i~~a~~~~~~~~-----~~~~v~~i~~D~~~ 116 (359)
+|+..++-..-..+++.++++|||-|.-.+.+-+.+ ..++++||..-.++.|+++.+... ..-.+.|+.+|...
T Consensus 104 NwIKs~LI~~y~~~~~~~~~LgCGKGGDLlKw~kAgI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~ 183 (389)
T KOG1975|consen 104 NWIKSVLINLYTKRGDDVLDLGCGKGGDLLKWDKAGIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFK 183 (389)
T ss_pred HHHHHHHHHHHhccccccceeccCCcccHhHhhhhcccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccch
Confidence 455444444445678899999999999888877765 689999999999999999876421 11147889998765
Q ss_pred CC--------CCCCccccccccc--ccchHHHHHHHhcCchhhHHHHHHHHHHHHHHhccCCCeeEEeecc
Q 018261 117 TD--------LPYFDICVANIPY--QISSPLTFKLLFHQPAFRCAIIMFQKEFAMRLVAQPGDKLYCRLSV 177 (359)
Q Consensus 117 ~~--------l~~fD~VvsNlPy--~i~s~ii~~ll~~~~~~~~~~~~~qkE~a~Rlv~kpGg~~y~~lsv 177 (359)
.. -+.||+|-|-..+ .+.+.--. -++++.++. +++|||.++++++-
T Consensus 184 ~~l~d~~e~~dp~fDivScQF~~HYaFetee~a-------------r~~l~Nva~--~LkpGG~FIgTiPd 239 (389)
T KOG1975|consen 184 ERLMDLLEFKDPRFDIVSCQFAFHYAFETEESA-------------RIALRNVAK--CLKPGGVFIGTIPD 239 (389)
T ss_pred hHHHHhccCCCCCcceeeeeeeEeeeeccHHHH-------------HHHHHHHHh--hcCCCcEEEEecCc
Confidence 32 2358988775443 34432211 112255665 78999999999854
No 197
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=98.22 E-value=1.2e-05 Score=74.74 Aligned_cols=102 Identities=19% Similarity=0.385 Sum_probs=72.6
Q ss_pred HHHHHHcCCCCCCEEEEEcCcccHHHHHHHHc--CCeEEEEeCCHHHHHHHHHHhhcCCCCCCeEEEEccccCCCCCCCc
Q 018261 46 ESIVQKAGIKSTDVILEIGPGTGNLTKKLLEA--GKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTDLPYFD 123 (359)
Q Consensus 46 ~~iv~~~~~~~~~~VLDIGcGtG~lt~~La~~--~~~V~avDid~~~i~~a~~~~~~~~~~~~v~~i~~D~~~~~l~~fD 123 (359)
..++.........+|+|||.|+|.++..+++. ..+++.+|+ |..++.+++ .++++++.+|++ -++|.+|
T Consensus 90 ~~~~~~~d~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~~~~-------~~rv~~~~gd~f-~~~P~~D 160 (241)
T PF00891_consen 90 DILLEAFDFSGFKTVVDVGGGSGHFAIALARAYPNLRATVFDL-PEVIEQAKE-------ADRVEFVPGDFF-DPLPVAD 160 (241)
T ss_dssp HHHHHHSTTTTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE--HHHHCCHHH-------TTTEEEEES-TT-TCCSSES
T ss_pred hhhhccccccCccEEEeccCcchHHHHHHHHHCCCCcceeecc-Hhhhhcccc-------ccccccccccHH-hhhcccc
Confidence 44556667777889999999999999999987 579999999 888888887 248999999999 4666699
Q ss_pred cccc-ccccccchHHHHHHHhcCchhhHHHHHHHHHHHHHHhccCC--CeeE
Q 018261 124 ICVA-NIPYQISSPLTFKLLFHQPAFRCAIIMFQKEFAMRLVAQPG--DKLY 172 (359)
Q Consensus 124 ~Vvs-NlPy~i~s~ii~~ll~~~~~~~~~~~~~qkE~a~Rlv~kpG--g~~y 172 (359)
+++. ++-.+|..+-...+|+ .++ -.++|| |+++
T Consensus 161 ~~~l~~vLh~~~d~~~~~iL~--------------~~~--~al~pg~~g~ll 196 (241)
T PF00891_consen 161 VYLLRHVLHDWSDEDCVKILR--------------NAA--AALKPGKDGRLL 196 (241)
T ss_dssp EEEEESSGGGS-HHHHHHHHH--------------HHH--HHSEECTTEEEE
T ss_pred ceeeehhhhhcchHHHHHHHH--------------HHH--HHhCCCCCCeEE
Confidence 7554 4544555555544443 222 278888 8775
No 198
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=98.20 E-value=9.4e-06 Score=71.96 Aligned_cols=75 Identities=20% Similarity=0.248 Sum_probs=50.5
Q ss_pred CCCCCCEEEEEcCcccHHHHHHHHc--CCeEEEEeCCHHHHHHHHHHhhcCC--CCCCeEEEEccccCC------CCCCC
Q 018261 53 GIKSTDVILEIGPGTGNLTKKLLEA--GKMVIAVELDSRMVLELQRRFQSTP--YSNRLKVIQGDVLKT------DLPYF 122 (359)
Q Consensus 53 ~~~~~~~VLDIGcGtG~lt~~La~~--~~~V~avDid~~~i~~a~~~~~~~~--~~~~v~~i~~D~~~~------~l~~f 122 (359)
....+.+|||+|||+|..++.++.. +.+|+..|.++ .++.++.|+..+. ...++.+..-|..+. ....|
T Consensus 42 ~~~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~-~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~ 120 (173)
T PF10294_consen 42 ELFRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE-VLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHSF 120 (173)
T ss_dssp GGTTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S--HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SSB
T ss_pred hhcCCceEEEECCccchhHHHHHhccCCceEEEeccch-hhHHHHHHHHhccccccccccCcEEEecCcccccccccccC
Confidence 3567889999999999999999988 68999999999 9999999988765 345777777665431 12269
Q ss_pred cccccc
Q 018261 123 DICVAN 128 (359)
Q Consensus 123 D~VvsN 128 (359)
|+|++.
T Consensus 121 D~Ilas 126 (173)
T PF10294_consen 121 DVILAS 126 (173)
T ss_dssp SEEEEE
T ss_pred CEEEEe
Confidence 987764
No 199
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=98.18 E-value=1.1e-05 Score=80.06 Aligned_cols=79 Identities=13% Similarity=0.198 Sum_probs=65.1
Q ss_pred CEEEEEcCcccHHHHHHHHc--C-CeEEEEeCCHHHHHHHHHHhhcCCCCCCeEEEEccccCCCC---CCCccccccccc
Q 018261 58 DVILEIGPGTGNLTKKLLEA--G-KMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTDL---PYFDICVANIPY 131 (359)
Q Consensus 58 ~~VLDIGcGtG~lt~~La~~--~-~~V~avDid~~~i~~a~~~~~~~~~~~~v~~i~~D~~~~~l---~~fD~VvsNlPy 131 (359)
-+|||+.||+|.+++.++.. + .+|+++|+++.+++.+++|+..++.. +++++++|+..+-. ..||+|+.++ |
T Consensus 46 ~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~-~~~v~~~Da~~~l~~~~~~fDvIdlDP-f 123 (374)
T TIGR00308 46 INIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVE-NIEVPNEDAANVLRYRNRKFHVIDIDP-F 123 (374)
T ss_pred CEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEchhHHHHHHHhCCCCCEEEeCC-C
Confidence 58999999999999999986 3 68999999999999999999877653 68999999876432 3699999987 6
Q ss_pred ccchHHH
Q 018261 132 QISSPLT 138 (359)
Q Consensus 132 ~i~s~ii 138 (359)
....+++
T Consensus 124 Gs~~~fl 130 (374)
T TIGR00308 124 GTPAPFV 130 (374)
T ss_pred CCcHHHH
Confidence 5444544
No 200
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=98.17 E-value=9.6e-06 Score=75.01 Aligned_cols=106 Identities=20% Similarity=0.290 Sum_probs=77.7
Q ss_pred CEEEEEcCcccHHHHHHHHc--CCeEEEEeCCHHHHHHHHHHhhcCCCCCCeEEEEccccCCC----CC-CCcccccccc
Q 018261 58 DVILEIGPGTGNLTKKLLEA--GKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTD----LP-YFDICVANIP 130 (359)
Q Consensus 58 ~~VLDIGcGtG~lt~~La~~--~~~V~avDid~~~i~~a~~~~~~~~~~~~v~~i~~D~~~~~----l~-~fD~VvsNlP 130 (359)
..+||||||.|.++..+|+. ...++|||+....+..|-+.+...++. |+.+++.|+.++- .+ +.|.|+.|.|
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l~-Nlri~~~DA~~~l~~~~~~~sl~~I~i~FP 128 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLK-NLRLLCGDAVEVLDYLIPDGSLDKIYINFP 128 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCCC-cEEEEcCCHHHHHHhcCCCCCeeEEEEECC
Confidence 58999999999999999988 478999999999999999998887765 9999999997642 22 6788888887
Q ss_pred cccchHHHHHHHhc-Cc-hhhHHHHHHHHHHHHHHhccCCCeeEEee
Q 018261 131 YQISSPLTFKLLFH-QP-AFRCAIIMFQKEFAMRLVAQPGDKLYCRL 175 (359)
Q Consensus 131 y~i~s~ii~~ll~~-~~-~~~~~~~~~qkE~a~Rlv~kpGg~~y~~l 175 (359)
=-|... +| .. ......+ +++++ +++|||.++...
T Consensus 129 DPWpKk------RH~KRRl~~~~fl---~~~a~--~Lk~gG~l~~aT 164 (227)
T COG0220 129 DPWPKK------RHHKRRLTQPEFL---KLYAR--KLKPGGVLHFAT 164 (227)
T ss_pred CCCCCc------cccccccCCHHHH---HHHHH--HccCCCEEEEEe
Confidence 544321 11 00 1111111 34554 789999998664
No 201
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=98.17 E-value=9.7e-06 Score=75.06 Aligned_cols=48 Identities=25% Similarity=0.464 Sum_probs=39.3
Q ss_pred HHHHHHcCC-CCCCEEEEEcCcccHHHHHHHHcC-CeEEEEeCCHHHHHH
Q 018261 46 ESIVQKAGI-KSTDVILEIGPGTGNLTKKLLEAG-KMVIAVELDSRMVLE 93 (359)
Q Consensus 46 ~~iv~~~~~-~~~~~VLDIGcGtG~lt~~La~~~-~~V~avDid~~~i~~ 93 (359)
..+++...+ ..+.+|||+|||||.+|..|++.+ .+|+|||+++.|+..
T Consensus 64 ~~~l~~~~~~~~~~~vlDiG~gtG~~t~~l~~~ga~~v~avD~~~~~l~~ 113 (228)
T TIGR00478 64 KEALEEFNIDVKNKIVLDVGSSTGGFTDCALQKGAKEVYGVDVGYNQLAE 113 (228)
T ss_pred HHHHHhcCCCCCCCEEEEcccCCCHHHHHHHHcCCCEEEEEeCCHHHHHH
Confidence 455555554 367799999999999999999995 689999999977665
No 202
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=98.16 E-value=1.1e-05 Score=77.06 Aligned_cols=134 Identities=17% Similarity=0.254 Sum_probs=94.6
Q ss_pred HHHHHHHcCCCCCCEEEEEcCcccHHHHHHHHc---CCeEEEEeCCHHHHHHHHHHhhcCCCCCCeEEEEccccCCC---
Q 018261 45 VESIVQKAGIKSTDVILEIGPGTGNLTKKLLEA---GKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTD--- 118 (359)
Q Consensus 45 ~~~iv~~~~~~~~~~VLDIGcGtG~lt~~La~~---~~~V~avDid~~~i~~a~~~~~~~~~~~~v~~i~~D~~~~~--- 118 (359)
-...+..+.+.++..|||+++|+|.-|.+++.. ...|+|+|+++.-+..+++++...+.. ++.++..|.....
T Consensus 74 S~l~~~~L~~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~-~v~~~~~D~~~~~~~~ 152 (283)
T PF01189_consen 74 SQLVALALDPQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVF-NVIVINADARKLDPKK 152 (283)
T ss_dssp HHHHHHHHTTTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-S-SEEEEESHHHHHHHHH
T ss_pred cccccccccccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCc-eEEEEeeccccccccc
Confidence 344455678889999999999999999999887 369999999999999999999888764 7888888887752
Q ss_pred CC-CCcccccccccccchHH----HHHHHhcCchhhHHHHHHHHHHHHHH--hc----cCCCee-EEeecchhh
Q 018261 119 LP-YFDICVANIPYQISSPL----TFKLLFHQPAFRCAIIMFQKEFAMRL--VA----QPGDKL-YCRLSVNTQ 180 (359)
Q Consensus 119 l~-~fD~VvsNlPy~i~s~i----i~~ll~~~~~~~~~~~~~qkE~a~Rl--v~----kpGg~~-y~~lsv~~q 180 (359)
.. .||.|+...|...+.-+ -.++....... ..+...|+++-++. .+ +|||.+ |++.|+...
T Consensus 153 ~~~~fd~VlvDaPCSg~G~i~r~p~~~~~~~~~~~-~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTCS~~~e 225 (283)
T PF01189_consen 153 PESKFDRVLVDAPCSGLGTIRRNPDIKWRRSPEDI-EKLAELQREILDNAAKLLNIDFKPGGRLVYSTCSLSPE 225 (283)
T ss_dssp HTTTEEEEEEECSCCCGGGTTTCTTHHHHE-TTHH-HHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEESHHHGG
T ss_pred cccccchhhcCCCccchhhhhhccchhhccccccc-chHHHHHHHHHHHHHHhhcccccCCCeEEEEeccHHHH
Confidence 22 49999999998755211 11222222222 23334566554322 35 788875 999988753
No 203
>PLN02823 spermine synthase
Probab=98.14 E-value=1.1e-05 Score=78.84 Aligned_cols=75 Identities=17% Similarity=0.344 Sum_probs=61.1
Q ss_pred CCCEEEEEcCcccHHHHHHHHc--CCeEEEEeCCHHHHHHHHHHhhcCC---CCCCeEEEEccccCCC---CCCCccccc
Q 018261 56 STDVILEIGPGTGNLTKKLLEA--GKMVIAVELDSRMVLELQRRFQSTP---YSNRLKVIQGDVLKTD---LPYFDICVA 127 (359)
Q Consensus 56 ~~~~VLDIGcGtG~lt~~La~~--~~~V~avDid~~~i~~a~~~~~~~~---~~~~v~~i~~D~~~~~---l~~fD~Vvs 127 (359)
...+||.||+|.|.++..+++. ..+|++||+|+.+++.|++.+.... -+.+++++.+|+.++- ...||+|+.
T Consensus 103 ~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDvIi~ 182 (336)
T PLN02823 103 NPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDVIIG 182 (336)
T ss_pred CCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccEEEe
Confidence 4578999999999999998886 3689999999999999999875321 1358999999987642 237999999
Q ss_pred ccc
Q 018261 128 NIP 130 (359)
Q Consensus 128 NlP 130 (359)
.++
T Consensus 183 D~~ 185 (336)
T PLN02823 183 DLA 185 (336)
T ss_pred cCC
Confidence 864
No 204
>PRK10742 putative methyltransferase; Provisional
Probab=98.11 E-value=7.8e-06 Score=76.11 Aligned_cols=89 Identities=18% Similarity=0.220 Sum_probs=74.3
Q ss_pred HHHHHHcCCCCCC--EEEEEcCcccHHHHHHHHcCCeEEEEeCCHHHHHHHHHHhhcC------C--CCCCeEEEEcccc
Q 018261 46 ESIVQKAGIKSTD--VILEIGPGTGNLTKKLLEAGKMVIAVELDSRMVLELQRRFQST------P--YSNRLKVIQGDVL 115 (359)
Q Consensus 46 ~~iv~~~~~~~~~--~VLDIGcGtG~lt~~La~~~~~V~avDid~~~i~~a~~~~~~~------~--~~~~v~~i~~D~~ 115 (359)
+.|++++++.++. +|||.-+|+|..+..++.+|++|++||.++.+...++.++... . +..+++++++|..
T Consensus 76 ~~l~kAvglk~g~~p~VLD~TAGlG~Da~~las~G~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da~ 155 (250)
T PRK10742 76 EAVAKAVGIKGDYLPDVVDATAGLGRDAFVLASVGCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSL 155 (250)
T ss_pred cHHHHHhCCCCCCCCEEEECCCCccHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcHH
Confidence 4567788888888 9999999999999999999999999999999999999988763 1 1247999999987
Q ss_pred CCC---CCCCcccccccccccc
Q 018261 116 KTD---LPYFDICVANIPYQIS 134 (359)
Q Consensus 116 ~~~---l~~fD~VvsNlPy~i~ 134 (359)
++- ...||+|+..+||-..
T Consensus 156 ~~L~~~~~~fDVVYlDPMfp~~ 177 (250)
T PRK10742 156 TALTDITPRPQVVYLDPMFPHK 177 (250)
T ss_pred HHHhhCCCCCcEEEECCCCCCC
Confidence 642 2269999999999753
No 205
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=98.08 E-value=1.2e-05 Score=76.74 Aligned_cols=106 Identities=23% Similarity=0.273 Sum_probs=72.7
Q ss_pred cccccccCC--Ccc--cccCHHHHHHHHHHcCCCCCCEEEEEcCcccHHHHHHHHcC-CeEEEEeCCHHHHHHHHHHhhc
Q 018261 26 GGISFHKSK--GQH--ILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEAG-KMVIAVELDSRMVLELQRRFQS 100 (359)
Q Consensus 26 ~~~~~~k~~--GQ~--fl~d~~v~~~iv~~~~~~~~~~VLDIGcGtG~lt~~La~~~-~~V~avDid~~~i~~a~~~~~~ 100 (359)
.|+++.-.+ ||+ |+.|.+-.+..+... ..+.+||++-|=||.++...+..| .+|++||.|..+++.+++|+..
T Consensus 91 ~gl~f~v~l~~gqktGlFlDqR~nR~~v~~~--~~gkrvLnlFsYTGgfsv~Aa~gGA~~v~~VD~S~~al~~a~~N~~l 168 (286)
T PF10672_consen 91 NGLKFRVDLTDGQKTGLFLDQRENRKWVRKY--AKGKRVLNLFSYTGGFSVAAAAGGAKEVVSVDSSKRALEWAKENAAL 168 (286)
T ss_dssp TTEEEEEESSSSSSTSS-GGGHHHHHHHHHH--CTTCEEEEET-TTTHHHHHHHHTTESEEEEEES-HHHHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCcceEcHHHHhhHHHHHHH--cCCCceEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHH
Confidence 345444443 454 334444444444443 357899999999999999988776 4799999999999999999988
Q ss_pred CCCC-CCeEEEEccccCCC-----CCCCccccccccccc
Q 018261 101 TPYS-NRLKVIQGDVLKTD-----LPYFDICVANIPYQI 133 (359)
Q Consensus 101 ~~~~-~~v~~i~~D~~~~~-----l~~fD~VvsNlPy~i 133 (359)
++++ .+++++.+|+++.- ...||+||.++|=..
T Consensus 169 Ng~~~~~~~~~~~Dvf~~l~~~~~~~~fD~IIlDPPsF~ 207 (286)
T PF10672_consen 169 NGLDLDRHRFIQGDVFKFLKRLKKGGRFDLIILDPPSFA 207 (286)
T ss_dssp TT-CCTCEEEEES-HHHHHHHHHHTT-EEEEEE--SSEE
T ss_pred cCCCccceEEEecCHHHHHHHHhcCCCCCEEEECCCCCC
Confidence 8764 58999999998631 237999999998543
No 206
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=98.02 E-value=1.5e-05 Score=81.83 Aligned_cols=182 Identities=16% Similarity=0.215 Sum_probs=114.9
Q ss_pred ccccCCCcccccCHHHHHHHHHHcCCCCCCEEEEEcCcccHHHHHHHHc----C--CeEEEEeCCHHHHHHHHHHhhcCC
Q 018261 29 SFHKSKGQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEA----G--KMVIAVELDSRMVLELQRRFQSTP 102 (359)
Q Consensus 29 ~~~k~~GQ~fl~d~~v~~~iv~~~~~~~~~~VLDIGcGtG~lt~~La~~----~--~~V~avDid~~~i~~a~~~~~~~~ 102 (359)
.-.|+-||+| +++.+++.|++.+.+.+..+|+|..||+|.+.....+. . ..++|.|+++.....++.++--++
T Consensus 160 ~~~k~~GEfy-TP~~v~~liv~~l~~~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhg 238 (489)
T COG0286 160 AEGKEAGEFY-TPREVSELIVELLDPEPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHG 238 (489)
T ss_pred hcCCCCCccC-ChHHHHHHHHHHcCCCCCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhC
Confidence 3445668765 99999999999998878889999999999876655543 1 568999999999999999987777
Q ss_pred CCCCeEEEEccccCCCC-------CCCcccccccccc---cchHHH-H----HHHhc--CchhhHHHHHHHHHHHHHHhc
Q 018261 103 YSNRLKVIQGDVLKTDL-------PYFDICVANIPYQ---ISSPLT-F----KLLFH--QPAFRCAIIMFQKEFAMRLVA 165 (359)
Q Consensus 103 ~~~~v~~i~~D~~~~~l-------~~fD~VvsNlPy~---i~s~ii-~----~ll~~--~~~~~~~~~~~qkE~a~Rlv~ 165 (359)
+..++.+.++|-+.-+. ..||.|++|+||+ |..... . +.... .+....+...+...+.. .+
T Consensus 239 i~~~~~i~~~dtl~~~~~~~~~~~~~~D~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~h~~~--~l 316 (489)
T COG0286 239 IEGDANIRHGDTLSNPKHDDKDDKGKFDFVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNSADLAFLQHILY--KL 316 (489)
T ss_pred CCccccccccccccCCcccccCCccceeEEEeCCCCCccccccccccccccccccccCCCCCCCchHHHHHHHHHH--hc
Confidence 54346777777665432 2589999999997 332221 0 00000 11111221222233333 45
Q ss_pred cCCCeeEEee--cch---------hhhHH---hhhhhhccCCCCccCCCCcceeEEEEeeCCC
Q 018261 166 QPGDKLYCRL--SVN---------TQLHA---RVSHLLKVGKNNFRPPPKVDSSVVRIEPRKP 214 (359)
Q Consensus 166 kpGg~~y~~l--sv~---------~q~~~---~v~~l~~v~~~~F~P~P~V~S~vv~l~~~~~ 214 (359)
+|||+.-..+ ++. .+..- .+..+..+|.+.|++. .+..+++-+.+..+
T Consensus 317 ~~~g~aaivl~~gvlfr~~~e~~IR~~l~~~~~~~~ii~lp~~lF~~t-~i~~~Il~l~k~k~ 378 (489)
T COG0286 317 KPGGRAAIVLPDGVLFRGGAEKDIRKDLLEDNLLEAIIGLPTGLFYNT-GIPTNILFLTKNKP 378 (489)
T ss_pred CCCceEEEEecCCcCcCCCchHHHHHHHHhccceEEeeeCChhhcccC-CCCeEEEEeecCCC
Confidence 6666432222 111 11111 2233446788999998 88888887766543
No 207
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=97.98 E-value=1.7e-05 Score=72.32 Aligned_cols=90 Identities=21% Similarity=0.376 Sum_probs=59.9
Q ss_pred cCHHHHHHHHHHcCCCCCCEEEEEcCcccHHHHHHHHc-C-CeEEEEeCCHHHHHHHHHHhh-------cCCC-CCCeEE
Q 018261 40 KNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEA-G-KMVIAVELDSRMVLELQRRFQ-------STPY-SNRLKV 109 (359)
Q Consensus 40 ~d~~v~~~iv~~~~~~~~~~VLDIGcGtG~lt~~La~~-~-~~V~avDid~~~i~~a~~~~~-------~~~~-~~~v~~ 109 (359)
+.+..+..|++.+++.+++..+|||||.|......+-. + .+++|||+.+.....|..... ..+. ..++++
T Consensus 26 i~~~~~~~il~~~~l~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l 105 (205)
T PF08123_consen 26 ISPEFVSKILDELNLTPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVEL 105 (205)
T ss_dssp CHHHHHHHHHHHTT--TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEE
T ss_pred cCHHHHHHHHHHhCCCCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhccccccee
Confidence 46788899999999999999999999999987766633 4 569999999999888765332 2221 237889
Q ss_pred EEccccCCCC-----CCCccccccc
Q 018261 110 IQGDVLKTDL-----PYFDICVANI 129 (359)
Q Consensus 110 i~~D~~~~~l-----~~fD~VvsNl 129 (359)
.++|+++.+. ...|+|++|-
T Consensus 106 ~~gdfl~~~~~~~~~s~AdvVf~Nn 130 (205)
T PF08123_consen 106 IHGDFLDPDFVKDIWSDADVVFVNN 130 (205)
T ss_dssp ECS-TTTHHHHHHHGHC-SEEEE--
T ss_pred eccCccccHhHhhhhcCCCEEEEec
Confidence 9999987542 3468888874
No 208
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=97.98 E-value=2.7e-05 Score=74.92 Aligned_cols=91 Identities=16% Similarity=0.322 Sum_probs=75.9
Q ss_pred ccccCHHHHHHHHHHcCCCCCCEEEEEcCcccHHHHHHHHc--CCeEEEEeCCHHHHHHHHHHhhcCCCCCCeEEEEccc
Q 018261 37 HILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEA--GKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDV 114 (359)
Q Consensus 37 ~fl~d~~v~~~iv~~~~~~~~~~VLDIGcGtG~lt~~La~~--~~~V~avDid~~~i~~a~~~~~~~~~~~~v~~i~~D~ 114 (359)
||..-|-+++.+++.+.+.++..++|.=+|.|..|..+++. ..+|+|+|.|+.++..+++++..+. .+++++++++
T Consensus 1 ~~~H~pVll~Evl~~L~~~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~~~--~R~~~i~~nF 78 (305)
T TIGR00006 1 NFFHQSVLLDEVVEGLNIKPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSDFE--GRVVLIHDNF 78 (305)
T ss_pred CCCCcchhHHHHHHhcCcCCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhhcC--CcEEEEeCCH
Confidence 46667889999999999999999999999999999999986 3799999999999999999887653 5899999998
Q ss_pred cCCC-------CCCCccccccc
Q 018261 115 LKTD-------LPYFDICVANI 129 (359)
Q Consensus 115 ~~~~-------l~~fD~VvsNl 129 (359)
.++. ...+|.|+.++
T Consensus 79 ~~l~~~l~~~~~~~vDgIl~DL 100 (305)
T TIGR00006 79 ANFFEHLDELLVTKIDGILVDL 100 (305)
T ss_pred HHHHHHHHhcCCCcccEEEEec
Confidence 7642 23467666554
No 209
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=97.95 E-value=5.1e-05 Score=64.89 Aligned_cols=74 Identities=27% Similarity=0.408 Sum_probs=55.8
Q ss_pred CCCCCEEEEEcCcccHHHHHHHH-----c-CCeEEEEeCCHHHHHHHHHHhhcCC--CCCCeEEEEccccCCC-CCCCcc
Q 018261 54 IKSTDVILEIGPGTGNLTKKLLE-----A-GKMVIAVELDSRMVLELQRRFQSTP--YSNRLKVIQGDVLKTD-LPYFDI 124 (359)
Q Consensus 54 ~~~~~~VLDIGcGtG~lt~~La~-----~-~~~V~avDid~~~i~~a~~~~~~~~--~~~~v~~i~~D~~~~~-l~~fD~ 124 (359)
..+..+|+|+|||.|+++..|+. . ..+|++||.++.+++.+.++..... +..++++..+++.... ....++
T Consensus 23 ~~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (141)
T PF13679_consen 23 SKRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQGDIADESSSDPPDI 102 (141)
T ss_pred cCCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhccchhhhcccCCCeE
Confidence 35678999999999999999998 3 6899999999999999988876554 3346677777665432 223455
Q ss_pred ccc
Q 018261 125 CVA 127 (359)
Q Consensus 125 Vvs 127 (359)
+++
T Consensus 103 ~vg 105 (141)
T PF13679_consen 103 LVG 105 (141)
T ss_pred EEE
Confidence 554
No 210
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=97.88 E-value=8.3e-05 Score=67.20 Aligned_cols=92 Identities=17% Similarity=0.256 Sum_probs=73.5
Q ss_pred cccCHHHHHHHHHHcC--CCCCCEEEEEcCcccHHHHHHHHc----CCeEEEEeCCHHHHHHHHHHhhcCC---------
Q 018261 38 ILKNPLLVESIVQKAG--IKSTDVILEIGPGTGNLTKKLLEA----GKMVIAVELDSRMVLELQRRFQSTP--------- 102 (359)
Q Consensus 38 fl~d~~v~~~iv~~~~--~~~~~~VLDIGcGtG~lt~~La~~----~~~V~avDid~~~i~~a~~~~~~~~--------- 102 (359)
-+.-|.+-..+++.+. +.++...||+|.|||+||..++.. +..++|||.-+++++.+++++...-
T Consensus 62 ~iSAp~mha~~le~L~~~L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~ 141 (237)
T KOG1661|consen 62 TISAPHMHATALEYLDDHLQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKL 141 (237)
T ss_pred EEcchHHHHHHHHHHHHhhccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhh
Confidence 3456888888999887 889999999999999999988854 3456999999999999999886432
Q ss_pred CCCCeEEEEccccCCCCC--CCccccccc
Q 018261 103 YSNRLKVIQGDVLKTDLP--YFDICVANI 129 (359)
Q Consensus 103 ~~~~v~~i~~D~~~~~l~--~fD~VvsNl 129 (359)
-..++.++.+|......+ +||.|.+..
T Consensus 142 ~~~~l~ivvGDgr~g~~e~a~YDaIhvGA 170 (237)
T KOG1661|consen 142 KRGELSIVVGDGRKGYAEQAPYDAIHVGA 170 (237)
T ss_pred ccCceEEEeCCccccCCccCCcceEEEcc
Confidence 024788999999875433 799887653
No 211
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=97.85 E-value=3e-05 Score=70.94 Aligned_cols=79 Identities=16% Similarity=0.261 Sum_probs=62.4
Q ss_pred CCCEEEEEcCcccHHHHHHHHcC-CeEEEEeCCHHHHHHHHHHhhcCCCCCCeEEEEccccCCCCC--CCcccccccccc
Q 018261 56 STDVILEIGPGTGNLTKKLLEAG-KMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTDLP--YFDICVANIPYQ 132 (359)
Q Consensus 56 ~~~~VLDIGcGtG~lt~~La~~~-~~V~avDid~~~i~~a~~~~~~~~~~~~v~~i~~D~~~~~l~--~fD~VvsNlPy~ 132 (359)
....++|||||.|.+...|...+ .+++-+|.|-.|++.++..-. ..+ ......+|-+.+++. ++|+|++++..|
T Consensus 72 ~fp~a~diGcs~G~v~rhl~~e~vekli~~DtS~~M~~s~~~~qd-p~i--~~~~~v~DEE~Ldf~ens~DLiisSlslH 148 (325)
T KOG2940|consen 72 SFPTAFDIGCSLGAVKRHLRGEGVEKLIMMDTSYDMIKSCRDAQD-PSI--ETSYFVGDEEFLDFKENSVDLIISSLSLH 148 (325)
T ss_pred hCcceeecccchhhhhHHHHhcchhheeeeecchHHHHHhhccCC-Cce--EEEEEecchhcccccccchhhhhhhhhhh
Confidence 34579999999999999998775 789999999999999876422 222 355677887777665 799999999888
Q ss_pred cchHH
Q 018261 133 ISSPL 137 (359)
Q Consensus 133 i~s~i 137 (359)
|+.++
T Consensus 149 W~NdL 153 (325)
T KOG2940|consen 149 WTNDL 153 (325)
T ss_pred hhccC
Confidence 87654
No 212
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=97.84 E-value=1.6e-05 Score=70.61 Aligned_cols=112 Identities=23% Similarity=0.397 Sum_probs=63.6
Q ss_pred HHHHHHcC-CC--CCCEEEEEcCcccHHHHHHHHcC---CeEEEEeCCHHHHHHHHHHhhcCCCCCCeEEEEccccCCC-
Q 018261 46 ESIVQKAG-IK--STDVILEIGPGTGNLTKKLLEAG---KMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTD- 118 (359)
Q Consensus 46 ~~iv~~~~-~~--~~~~VLDIGcGtG~lt~~La~~~---~~V~avDid~~~i~~a~~~~~~~~~~~~v~~i~~D~~~~~- 118 (359)
..|.+..+ +. .+.+|||+||++|.+|..+++++ .+|+|||+.+.- .. .++..+++|+.+..
T Consensus 10 ~ei~~~~~~~~~~~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~~---------~~---~~~~~i~~d~~~~~~ 77 (181)
T PF01728_consen 10 YEIDEKFKIFKPGKGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPMD---------PL---QNVSFIQGDITNPEN 77 (181)
T ss_dssp HHHHHTTSSS-TTTTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSSTG---------S----TTEEBTTGGGEEEEH
T ss_pred HHHHHHCCCCCcccccEEEEcCCcccceeeeeeecccccceEEEEeccccc---------cc---cceeeeecccchhhH
Confidence 34455555 33 34899999999999999999987 899999998761 11 25667777765421
Q ss_pred -------C----CCCcccccccccccchHHHHHHHhcCchhhHHHHHHHHHHHHHHhccCCCeeEEee
Q 018261 119 -------L----PYFDICVANIPYQISSPLTFKLLFHQPAFRCAIIMFQKEFAMRLVAQPGDKLYCRL 175 (359)
Q Consensus 119 -------l----~~fD~VvsNlPy~i~s~ii~~ll~~~~~~~~~~~~~qkE~a~Rlv~kpGg~~y~~l 175 (359)
+ ..+|+|+|....+++......- .....+++.+-.++.. .++|||.+...+
T Consensus 78 ~~~i~~~~~~~~~~~dlv~~D~~~~~~g~~~~d~-----~~~~~l~~~~l~~a~~-~L~~gG~~v~K~ 139 (181)
T PF01728_consen 78 IKDIRKLLPESGEKFDLVLSDMAPNVSGDRNIDE-----FISIRLILSQLLLALE-LLKPGGTFVIKV 139 (181)
T ss_dssp SHHGGGSHGTTTCSESEEEE-------SSHHSSH-----HHHHHHHHHHHHHHHH-HHCTTEEEEEEE
T ss_pred HHhhhhhccccccCcceeccccccCCCCchhhHH-----HHHHHHHHHHHHHHHh-hhcCCCEEEEEe
Confidence 1 3689999988555543211110 1111222333344543 578999765443
No 213
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=97.83 E-value=4.8e-05 Score=64.45 Aligned_cols=58 Identities=17% Similarity=0.245 Sum_probs=49.4
Q ss_pred EEEEEcCcccHHHHHHHHcC--CeEEEEeCCHHHHHHHHHHhhcCCCCCCeEEEEccccCC
Q 018261 59 VILEIGPGTGNLTKKLLEAG--KMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKT 117 (359)
Q Consensus 59 ~VLDIGcGtG~lt~~La~~~--~~V~avDid~~~i~~a~~~~~~~~~~~~v~~i~~D~~~~ 117 (359)
+|||||||.|.++..+++.+ .+|+++|.++.+++.+++++..+++. ++++++..+.+-
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n~~~-~v~~~~~al~~~ 60 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNNLP-NVVLLNAAVGDR 60 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHcCCC-cEEEEEeeeeCC
Confidence 48999999999999999875 36999999999999999998876553 688888877653
No 214
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=97.81 E-value=0.00018 Score=65.28 Aligned_cols=125 Identities=18% Similarity=0.178 Sum_probs=74.1
Q ss_pred CcccccCHHHHHHHHHHcCCCCCCEEEEEcCcccHHHHHHHHc--CCeEEEEeCCHHHHHHHHHHhhcCCCCCCeE-EEE
Q 018261 35 GQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEA--GKMVIAVELDSRMVLELQRRFQSTPYSNRLK-VIQ 111 (359)
Q Consensus 35 GQ~fl~d~~v~~~iv~~~~~~~~~~VLDIGcGtG~lt~~La~~--~~~V~avDid~~~i~~a~~~~~~~~~~~~v~-~i~ 111 (359)
.+-...|+.-+-.++...-...+.+|||||||||..+..+++. ..+..--|.++......+......++. |+. -+.
T Consensus 4 spAaeRNk~pIl~vL~~~l~~~~~~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~-Nv~~P~~ 82 (204)
T PF06080_consen 4 SPAAERNKDPILEVLKQYLPDSGTRVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLP-NVRPPLA 82 (204)
T ss_pred ChhhhhCHhHHHHHHHHHhCccCceEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCc-ccCCCeE
Confidence 3344456665655665542233335999999999999999987 467888999999876666655544332 221 234
Q ss_pred ccccCCC--C--------CCCcccccccccccchHHHHHHHhcCchhhHHHHHHHHHHHHHHhccCCCee--EEee
Q 018261 112 GDVLKTD--L--------PYFDICVANIPYQISSPLTFKLLFHQPAFRCAIIMFQKEFAMRLVAQPGDKL--YCRL 175 (359)
Q Consensus 112 ~D~~~~~--l--------~~fD~VvsNlPy~i~s~ii~~ll~~~~~~~~~~~~~qkE~a~Rlv~kpGg~~--y~~l 175 (359)
-|+.+.. . ..||.|++.=-.||++ +.++.-++ +..++ +++|||.+ |+.+
T Consensus 83 lDv~~~~w~~~~~~~~~~~~~D~i~~~N~lHI~p------------~~~~~~lf-~~a~~--~L~~gG~L~~YGPF 143 (204)
T PF06080_consen 83 LDVSAPPWPWELPAPLSPESFDAIFCINMLHISP------------WSAVEGLF-AGAAR--LLKPGGLLFLYGPF 143 (204)
T ss_pred eecCCCCCccccccccCCCCcceeeehhHHHhcC------------HHHHHHHH-HHHHH--hCCCCCEEEEeCCc
Confidence 4555431 1 2689887743344432 22222222 34443 78899986 5443
No 215
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=97.79 E-value=0.00011 Score=75.83 Aligned_cols=110 Identities=15% Similarity=0.071 Sum_probs=75.9
Q ss_pred CCCEEEEEcCcccHHHHHHHHc--CCeEEEEeCCHHHHHHHHHHhhcCCCCCCeEEEEccccCC----CCCCCccccccc
Q 018261 56 STDVILEIGPGTGNLTKKLLEA--GKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKT----DLPYFDICVANI 129 (359)
Q Consensus 56 ~~~~VLDIGcGtG~lt~~La~~--~~~V~avDid~~~i~~a~~~~~~~~~~~~v~~i~~D~~~~----~l~~fD~VvsNl 129 (359)
....+||||||.|.++..+|.. ...++|||+....+..+.++....++ .|+.+++.|+..+ +-.++|.|+.|.
T Consensus 347 ~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~l-~N~~~~~~~~~~~~~~~~~~sv~~i~i~F 425 (506)
T PRK01544 347 KRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQNI-TNFLLFPNNLDLILNDLPNNSLDGIYILF 425 (506)
T ss_pred CCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcCC-CeEEEEcCCHHHHHHhcCcccccEEEEEC
Confidence 4568999999999999999987 47899999999988888777766655 3899999887532 223688899988
Q ss_pred ccccchHHHHHHHhcC-chhhHHHHHHHHHHHHHHhccCCCeeEEeec
Q 018261 130 PYQISSPLTFKLLFHQ-PAFRCAIIMFQKEFAMRLVAQPGDKLYCRLS 176 (359)
Q Consensus 130 Py~i~s~ii~~ll~~~-~~~~~~~~~~qkE~a~Rlv~kpGg~~y~~ls 176 (359)
|=-|...- ++. .......+ +++++ +++|||.++...-
T Consensus 426 PDPWpKkr-----h~krRl~~~~fl---~~~~~--~Lk~gG~i~~~TD 463 (506)
T PRK01544 426 PDPWIKNK-----QKKKRIFNKERL---KILQD--KLKDNGNLVFASD 463 (506)
T ss_pred CCCCCCCC-----CccccccCHHHH---HHHHH--hcCCCCEEEEEcC
Confidence 75554210 000 01111111 34443 7899999886543
No 216
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=97.75 E-value=0.0001 Score=71.58 Aligned_cols=67 Identities=21% Similarity=0.298 Sum_probs=53.6
Q ss_pred CCCCEEEEEcCcccHHHHHHHHcCCeEEEEeCCHHHHHHHHHHhhcCCCCCCeEEEEccccCCCC--CCCccccccc
Q 018261 55 KSTDVILEIGPGTGNLTKKLLEAGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTDL--PYFDICVANI 129 (359)
Q Consensus 55 ~~~~~VLDIGcGtG~lt~~La~~~~~V~avDid~~~i~~a~~~~~~~~~~~~v~~i~~D~~~~~l--~~fD~VvsNl 129 (359)
.++.++|||||++|.+|..|+++|.+|+|||..+ |.+ .+...+ +|+.+.+|...... ..+|.+||.+
T Consensus 210 ~~g~~vlDLGAsPGGWT~~L~~rG~~V~AVD~g~-l~~----~L~~~~---~V~h~~~d~fr~~p~~~~vDwvVcDm 278 (357)
T PRK11760 210 APGMRAVDLGAAPGGWTYQLVRRGMFVTAVDNGP-MAQ----SLMDTG---QVEHLRADGFKFRPPRKNVDWLVCDM 278 (357)
T ss_pred CCCCEEEEeCCCCcHHHHHHHHcCCEEEEEechh-cCH----hhhCCC---CEEEEeccCcccCCCCCCCCEEEEec
Confidence 5788999999999999999999999999999654 322 233333 89999999877653 3689999976
No 217
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=97.74 E-value=0.00027 Score=67.47 Aligned_cols=135 Identities=18% Similarity=0.229 Sum_probs=89.4
Q ss_pred CEEEEEcCcccHHHHHHHHcC--CeEEEEeCCHHHHHHHHHHhhcCC---CCCCeEEEEccccCCC--C-CCCccccccc
Q 018261 58 DVILEIGPGTGNLTKKLLEAG--KMVIAVELDSRMVLELQRRFQSTP---YSNRLKVIQGDVLKTD--L-PYFDICVANI 129 (359)
Q Consensus 58 ~~VLDIGcGtG~lt~~La~~~--~~V~avDid~~~i~~a~~~~~~~~---~~~~v~~i~~D~~~~~--l-~~fD~VvsNl 129 (359)
.+||-||-|.|..++.+++.. .+++.||||+..++.+++.+.... .+.+++++.+|..++- . ..||+|+.+.
T Consensus 78 k~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~fDvIi~D~ 157 (282)
T COG0421 78 KRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEEKFDVIIVDS 157 (282)
T ss_pred CeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCCcCCEEEEcC
Confidence 699999999999999999985 899999999999999999876532 1469999999987642 2 2699999875
Q ss_pred ccccchHHHHHHHhcCchhhHHHHHHHHHHHHHHhccCCCeeEEe-ec------chhhhHHhhhhhhccCCCCccCCCCc
Q 018261 130 PYQISSPLTFKLLFHQPAFRCAIIMFQKEFAMRLVAQPGDKLYCR-LS------VNTQLHARVSHLLKVGKNNFRPPPKV 202 (359)
Q Consensus 130 Py~i~s~ii~~ll~~~~~~~~~~~~~qkE~a~Rlv~kpGg~~y~~-ls------v~~q~~~~v~~l~~v~~~~F~P~P~V 202 (359)
.=.. .|- ..+ +...++ +. .+| +++++|.+... -+ ........+..++..-.....+.|.+
T Consensus 158 tdp~-gp~-~~L------ft~eFy---~~-~~~-~L~~~Gi~v~q~~~~~~~~~~~~~~~~~~~~vf~~~~~~~~~ipt~ 224 (282)
T COG0421 158 TDPV-GPA-EAL------FTEEFY---EG-CRR-ALKEDGIFVAQAGSPFLQDEEIALAYRNVSRVFSIVPPYVAPIPTY 224 (282)
T ss_pred CCCC-Ccc-ccc------CCHHHH---HH-HHH-hcCCCcEEEEecCCcccchHHHHHHHHHHHhhccccccceecccee
Confidence 2211 110 000 001110 11 123 67888876433 11 11234445566666656666778888
Q ss_pred cee
Q 018261 203 DSS 205 (359)
Q Consensus 203 ~S~ 205 (359)
.+.
T Consensus 225 ~~g 227 (282)
T COG0421 225 PSG 227 (282)
T ss_pred cCC
Confidence 887
No 218
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=97.71 E-value=0.00026 Score=67.73 Aligned_cols=123 Identities=14% Similarity=0.211 Sum_probs=76.8
Q ss_pred ccccCHHHHHHHHHHcCC-CCCCEEEEEcCcccH----HHHHHHHc------CCeEEEEeCCHHHHHHHHHHhhc-----
Q 018261 37 HILKNPLLVESIVQKAGI-KSTDVILEIGPGTGN----LTKKLLEA------GKMVIAVELDSRMVLELQRRFQS----- 100 (359)
Q Consensus 37 ~fl~d~~v~~~iv~~~~~-~~~~~VLDIGcGtG~----lt~~La~~------~~~V~avDid~~~i~~a~~~~~~----- 100 (359)
.|+.++...+.+.+.+.. ...-+|+-.||.||- ++..|.+. ..+|+|+|||+.+++.|++-.-.
T Consensus 95 ~FFRd~~~f~~L~~~~~~~~~~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r 174 (287)
T PRK10611 95 AFFREAHHFPILAEHARRRSGEYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELK 174 (287)
T ss_pred CccCCcHHHHHHHHHHHhcCCCEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHh
Confidence 477887777776664422 123699999999993 44445443 25799999999999999864200
Q ss_pred ------------------CC-------CCCCeEEEEccccCCCC---CCCccccc-ccccccchHHHHHHHhcCchhhHH
Q 018261 101 ------------------TP-------YSNRLKVIQGDVLKTDL---PYFDICVA-NIPYQISSPLTFKLLFHQPAFRCA 151 (359)
Q Consensus 101 ------------------~~-------~~~~v~~i~~D~~~~~l---~~fD~Vvs-NlPy~i~s~ii~~ll~~~~~~~~~ 151 (359)
.+ +...|+|...|+.+.++ ..||+|+| |.-.|...+...+++
T Consensus 175 ~~p~~~~~ryF~~~~~~~~~~~~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF~~~~~~~vl--------- 245 (287)
T PRK10611 175 TLSPQQLQRYFMRGTGPHEGLVRVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYFDKTTQERIL--------- 245 (287)
T ss_pred cCCHHHHHHHcccccCCCCceEEEChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHhcCCHHHHHHHH---------
Confidence 00 22467888888887443 37999998 332222222222221
Q ss_pred HHHHHHHHHHHHhccCCCeeEEee
Q 018261 152 IIMFQKEFAMRLVAQPGDKLYCRL 175 (359)
Q Consensus 152 ~~~~qkE~a~Rlv~kpGg~~y~~l 175 (359)
+.++. .++|||.++...
T Consensus 246 -----~~l~~--~L~pgG~L~lG~ 262 (287)
T PRK10611 246 -----RRFVP--LLKPDGLLFAGH 262 (287)
T ss_pred -----HHHHH--HhCCCcEEEEeC
Confidence 34443 689999886543
No 219
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.68 E-value=0.00031 Score=63.69 Aligned_cols=117 Identities=18% Similarity=0.287 Sum_probs=73.7
Q ss_pred CCCCEEEEEcCcccHHHHHHHHcC---CeEEEEeCCHHHHHHHHHHhhcCCCCCCeEEEEccccCCC--------CC--C
Q 018261 55 KSTDVILEIGPGTGNLTKKLLEAG---KMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTD--------LP--Y 121 (359)
Q Consensus 55 ~~~~~VLDIGcGtG~lt~~La~~~---~~V~avDid~~~i~~a~~~~~~~~~~~~v~~i~~D~~~~~--------l~--~ 121 (359)
.++.+|+|+|+-+|.+++.+++.. .+|+|||+.|-- .. .++.++++|++.-+ ++ .
T Consensus 44 ~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~---------~~---~~V~~iq~d~~~~~~~~~l~~~l~~~~ 111 (205)
T COG0293 44 KPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMK---------PI---PGVIFLQGDITDEDTLEKLLEALGGAP 111 (205)
T ss_pred cCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcccc---------cC---CCceEEeeeccCccHHHHHHHHcCCCC
Confidence 567899999999999999999873 349999998742 11 26999999998743 12 3
Q ss_pred CcccccccccccchHHHHHHHhcCchhhHHHHHHHHHHHHHHhccCCCeeEEee---cchhhhHHhhhhhh
Q 018261 122 FDICVANIPYQISSPLTFKLLFHQPAFRCAIIMFQKEFAMRLVAQPGDKLYCRL---SVNTQLHARVSHLL 189 (359)
Q Consensus 122 fD~VvsNlPy~i~s~ii~~ll~~~~~~~~~~~~~qkE~a~Rlv~kpGg~~y~~l---sv~~q~~~~v~~l~ 189 (359)
+|+|+|.+.-+++.-........ ..+...--+++.. +++|||.+.... .....++..+..++
T Consensus 112 ~DvV~sD~ap~~~g~~~~Dh~r~-----~~L~~~a~~~a~~-vL~~~G~fv~K~fqg~~~~~~l~~~~~~F 176 (205)
T COG0293 112 VDVVLSDMAPNTSGNRSVDHARS-----MYLCELALEFALE-VLKPGGSFVAKVFQGEDFEDLLKALRRLF 176 (205)
T ss_pred cceEEecCCCCcCCCccccHHHH-----HHHHHHHHHHHHH-eeCCCCeEEEEEEeCCCHHHHHHHHHHhh
Confidence 69999887655553221111110 1111111355644 789999875443 22334555555554
No 220
>KOG2671 consensus Putative RNA methylase [Replication, recombination and repair]
Probab=97.58 E-value=5.5e-05 Score=72.86 Aligned_cols=112 Identities=23% Similarity=0.285 Sum_probs=87.5
Q ss_pred CCCccccccccCCCcccccCHHHHHHHHHHcCCCCCCEEEEEcCcccHHHHHHHHcCCeEEEEeCCHHHHHH-------H
Q 018261 22 GLGAGGISFHKSKGQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEAGKMVIAVELDSRMVLE-------L 94 (359)
Q Consensus 22 ~~~~~~~~~~k~~GQ~fl~d~~v~~~iv~~~~~~~~~~VLDIGcGtG~lt~~La~~~~~V~avDid~~~i~~-------a 94 (359)
-.+++.++-+.-.| |=-.|.++---+++.+.+.+|+.|+|-=.|||.+....+.-|+.|+|-|||-+++.. .
T Consensus 175 li~~y~LK~R~yiG-nTSmDAeLSli~AN~Amv~pGdivyDPFVGTGslLvsaa~FGa~viGtDIDyr~vragrg~~~si 253 (421)
T KOG2671|consen 175 LIEKYDLKKRCYIG-NTSMDAELSLIMANQAMVKPGDIVYDPFVGTGSLLVSAAHFGAYVIGTDIDYRTVRAGRGEDESI 253 (421)
T ss_pred HhhhcccccccccC-CcccchhHHHHHhhhhccCCCCEEecCccccCceeeehhhhcceeeccccchheeecccCCCcch
Confidence 34456666666666 334577777777888889999999999999999999999889999999999999872 3
Q ss_pred HHHhhcCCCC-CCeEEEEccccCCCCC---CCcccccccccccc
Q 018261 95 QRRFQSTPYS-NRLKVIQGDVLKTDLP---YFDICVANIPYQIS 134 (359)
Q Consensus 95 ~~~~~~~~~~-~~v~~i~~D~~~~~l~---~fD~VvsNlPy~i~ 134 (359)
+.|+++++.. .-+.++.+|+..-++. .||.|||.+||.+-
T Consensus 254 ~aNFkQYg~~~~fldvl~~D~sn~~~rsn~~fDaIvcDPPYGVR 297 (421)
T KOG2671|consen 254 KANFKQYGSSSQFLDVLTADFSNPPLRSNLKFDAIVCDPPYGVR 297 (421)
T ss_pred hHhHHHhCCcchhhheeeecccCcchhhcceeeEEEeCCCcchh
Confidence 5667776632 2356788888876654 69999999999864
No 221
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.52 E-value=0.0011 Score=60.95 Aligned_cols=92 Identities=18% Similarity=0.202 Sum_probs=72.3
Q ss_pred ccccCHHHHHHHHHHcCCCCCCEEEEEcCcccHHHHHHHHc---CCeEEEEeCCHHHHHHHHHHhhcCCCCCCeEEEEcc
Q 018261 37 HILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEA---GKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGD 113 (359)
Q Consensus 37 ~fl~d~~v~~~iv~~~~~~~~~~VLDIGcGtG~lt~~La~~---~~~V~avDid~~~i~~a~~~~~~~~~~~~v~~i~~D 113 (359)
...+.+.....+...+..-...++||||.=||+-+..+|.. +.+|+++|+|+..++.+.+..+..++++++++++++
T Consensus 54 ~m~v~~d~g~fl~~li~~~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~ 133 (237)
T KOG1663|consen 54 EMLVGPDKGQFLQMLIRLLNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGP 133 (237)
T ss_pred ceecChHHHHHHHHHHHHhCCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecc
Confidence 45566666666666666667789999999999877766654 689999999999999998888877888899999999
Q ss_pred ccCC--------CCCCCcccccc
Q 018261 114 VLKT--------DLPYFDICVAN 128 (359)
Q Consensus 114 ~~~~--------~l~~fD~VvsN 128 (359)
+.+. +...||.++..
T Consensus 134 a~esLd~l~~~~~~~tfDfaFvD 156 (237)
T KOG1663|consen 134 ALESLDELLADGESGTFDFAFVD 156 (237)
T ss_pred hhhhHHHHHhcCCCCceeEEEEc
Confidence 8762 13368888764
No 222
>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]
Probab=97.49 E-value=0.00042 Score=68.49 Aligned_cols=128 Identities=16% Similarity=0.190 Sum_probs=89.6
Q ss_pred HHHcCCCCCCEEEEEcCcccHHHHHHHHc---CCeEEEEeCCHHHHHHHHHHhhcCCCCCCeEEEEccccCCC---CC-C
Q 018261 49 VQKAGIKSTDVILEIGPGTGNLTKKLLEA---GKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTD---LP-Y 121 (359)
Q Consensus 49 v~~~~~~~~~~VLDIGcGtG~lt~~La~~---~~~V~avDid~~~i~~a~~~~~~~~~~~~v~~i~~D~~~~~---l~-~ 121 (359)
+..+.++++.+|||+++-+|.=|.++|.. ...|+|.|.+..-+..++.++...++. +..+++.|..+++ ++ +
T Consensus 234 v~aL~Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv~-ntiv~n~D~~ef~~~~~~~~ 312 (460)
T KOG1122|consen 234 VMALDPQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGVT-NTIVSNYDGREFPEKEFPGS 312 (460)
T ss_pred eeecCCCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCCC-ceEEEccCcccccccccCcc
Confidence 34567889999999999999999888865 468999999999999999999888865 7778888987654 22 7
Q ss_pred Ccccccccccccc----hHHHHHHHhcCchhhHHHHHHHHHHH---HHHhccCCCee-EEeecchh
Q 018261 122 FDICVANIPYQIS----SPLTFKLLFHQPAFRCAIIMFQKEFA---MRLVAQPGDKL-YCRLSVNT 179 (359)
Q Consensus 122 fD~VvsNlPy~i~----s~ii~~ll~~~~~~~~~~~~~qkE~a---~Rlv~kpGg~~-y~~lsv~~ 179 (359)
||.|....|..-+ .+-..+..+....+.. ...+|++.- -. +.+|||.+ |+++|+..
T Consensus 313 fDRVLLDAPCSGtgvi~K~~~vkt~k~~~di~~-~~~LQr~LllsAi~-lv~~GGvLVYSTCSI~~ 376 (460)
T KOG1122|consen 313 FDRVLLDAPCSGTGVISKDQSVKTNKTVKDILR-YAHLQRELLLSAID-LVKAGGVLVYSTCSITV 376 (460)
T ss_pred cceeeecCCCCCCcccccccccccchhHHHHHH-hHHHHHHHHHHHHh-hccCCcEEEEEeeecch
Confidence 9999988887643 2222222221111111 123444332 12 45788875 99998874
No 223
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=97.44 E-value=0.0021 Score=59.61 Aligned_cols=142 Identities=15% Similarity=0.152 Sum_probs=76.5
Q ss_pred ccccCCCcccccCHHHHHHHHHHcCC--CCCCEEEEEcCccc-HHHHHHHHcCCeEEEEeCCHHHHHHHHHHhhcCCCCC
Q 018261 29 SFHKSKGQHILKNPLLVESIVQKAGI--KSTDVILEIGPGTG-NLTKKLLEAGKMVIAVELDSRMVLELQRRFQSTPYSN 105 (359)
Q Consensus 29 ~~~k~~GQ~fl~d~~v~~~iv~~~~~--~~~~~VLDIGcGtG-~lt~~La~~~~~V~avDid~~~i~~a~~~~~~~~~~~ 105 (359)
.+...+-|-+.+....+.+++-.+.- -.+.+||=+|=.-- .++..|.....+|+.+|||+++++..++.....++
T Consensus 15 ~~~~~~DQ~~~T~eT~~~Ra~~~~~~gdL~gk~il~lGDDDLtSlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~gl-- 92 (243)
T PF01861_consen 15 EPDVELDQGYATPETTLRRAALMAERGDLEGKRILFLGDDDLTSLALALTGLPKRITVVDIDERLLDFINRVAEEEGL-- 92 (243)
T ss_dssp ---GGGT---B-HHHHHHHHHHHHHTT-STT-EEEEES-TT-HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHHT---
T ss_pred CCccccccccccHHHHHHHHHHHHhcCcccCCEEEEEcCCcHHHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHcCC--
Confidence 34566778888888877776655432 36889998884432 23333334468999999999999999998887775
Q ss_pred CeEEEEccccCC-CC---CCCcccccccccccchHHHHHHHhcCchhhHHHHHHHHHHHHHHhccCCCeeEEeecchh--
Q 018261 106 RLKVIQGDVLKT-DL---PYFDICVANIPYQISSPLTFKLLFHQPAFRCAIIMFQKEFAMRLVAQPGDKLYCRLSVNT-- 179 (359)
Q Consensus 106 ~v~~i~~D~~~~-~l---~~fD~VvsNlPy~i~s~ii~~ll~~~~~~~~~~~~~qkE~a~Rlv~kpGg~~y~~lsv~~-- 179 (359)
+++.++.|+.+- +. ..||+++.++||-+.. +-+.+.+-+. .+..+|+..|..++...
T Consensus 93 ~i~~~~~DlR~~LP~~~~~~fD~f~TDPPyT~~G---------------~~LFlsRgi~--~Lk~~g~~gy~~~~~~~~s 155 (243)
T PF01861_consen 93 PIEAVHYDLRDPLPEELRGKFDVFFTDPPYTPEG---------------LKLFLSRGIE--ALKGEGCAGYFGFTHKEAS 155 (243)
T ss_dssp -EEEE---TTS---TTTSS-BSEEEE---SSHHH---------------HHHHHHHHHH--TB-STT-EEEEEE-TTT--
T ss_pred ceEEEEecccccCCHHHhcCCCEEEeCCCCCHHH---------------HHHHHHHHHH--HhCCCCceEEEEEecCcCc
Confidence 599999999762 21 2699999999997532 1222333332 14457777787776553
Q ss_pred -hhHHhhhhhh
Q 018261 180 -QLHARVSHLL 189 (359)
Q Consensus 180 -q~~~~v~~l~ 189 (359)
..|..++...
T Consensus 156 ~~~~~~~Q~~l 166 (243)
T PF01861_consen 156 PDKWLEVQRFL 166 (243)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 3456666554
No 224
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=97.42 E-value=0.00031 Score=65.86 Aligned_cols=77 Identities=23% Similarity=0.393 Sum_probs=59.5
Q ss_pred CCCCEEEEEcCcccHHHHHHHHcC--CeEEEEeCCHHHHHHHHHHhhcCC---CCCCeEEEEccccCC---CCC-CCccc
Q 018261 55 KSTDVILEIGPGTGNLTKKLLEAG--KMVIAVELDSRMVLELQRRFQSTP---YSNRLKVIQGDVLKT---DLP-YFDIC 125 (359)
Q Consensus 55 ~~~~~VLDIGcGtG~lt~~La~~~--~~V~avDid~~~i~~a~~~~~~~~---~~~~v~~i~~D~~~~---~l~-~fD~V 125 (359)
....+||=||-|.|..+..+++.. .+|+.||+|+..++.+++.+.... -+.+++++.+|+..+ ... .||+|
T Consensus 75 ~~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yDvI 154 (246)
T PF01564_consen 75 PNPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYDVI 154 (246)
T ss_dssp SST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EEEE
T ss_pred CCcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCcccEE
Confidence 367899999999999999999874 789999999999999998765321 134899999998652 234 79999
Q ss_pred cccccc
Q 018261 126 VANIPY 131 (359)
Q Consensus 126 vsNlPy 131 (359)
+..++-
T Consensus 155 i~D~~d 160 (246)
T PF01564_consen 155 IVDLTD 160 (246)
T ss_dssp EEESSS
T ss_pred EEeCCC
Confidence 987754
No 225
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=97.35 E-value=0.00023 Score=63.80 Aligned_cols=84 Identities=19% Similarity=0.349 Sum_probs=67.5
Q ss_pred HHHHHHcCCCCCCEEEEEcCcccHHHHHHHHcC-CeEEEEeCCHHHHHHHHHHhhcCCCCCCeEEEEccccCCCCCCCcc
Q 018261 46 ESIVQKAGIKSTDVILEIGPGTGNLTKKLLEAG-KMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTDLPYFDI 124 (359)
Q Consensus 46 ~~iv~~~~~~~~~~VLDIGcGtG~lt~~La~~~-~~V~avDid~~~i~~a~~~~~~~~~~~~v~~i~~D~~~~~l~~fD~ 124 (359)
+.+...-+.-.+++|||+|+|+|.-++..++.| ..|++.|++|.....++-|...+++ ++.+.+.|..- +.+.||+
T Consensus 69 R~i~~~PetVrgkrVLd~gagsgLvaIAaa~aGA~~v~a~d~~P~~~~ai~lNa~angv--~i~~~~~d~~g-~~~~~Dl 145 (218)
T COG3897 69 RYIDDHPETVRGKRVLDLGAGSGLVAIAAARAGAAEVVAADIDPWLEQAIRLNAAANGV--SILFTHADLIG-SPPAFDL 145 (218)
T ss_pred HHHhcCccccccceeeecccccChHHHHHHHhhhHHHHhcCCChHHHHHhhcchhhccc--eeEEeeccccC-CCcceeE
Confidence 444444455578999999999999999988886 6899999999999999989888875 78899999887 6668997
Q ss_pred ccc-ccccc
Q 018261 125 CVA-NIPYQ 132 (359)
Q Consensus 125 Vvs-NlPy~ 132 (359)
++. .+-|+
T Consensus 146 ~LagDlfy~ 154 (218)
T COG3897 146 LLAGDLFYN 154 (218)
T ss_pred EEeeceecC
Confidence 655 35444
No 226
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=97.33 E-value=0.00066 Score=61.89 Aligned_cols=82 Identities=23% Similarity=0.338 Sum_probs=59.7
Q ss_pred EEEEcCcccHHHHHHHHcC--CeEEEEeCCHHHHHHHHHHhhcCCCCCCeEEEEccccC-CCCCC-Ccc-cccccccccc
Q 018261 60 ILEIGPGTGNLTKKLLEAG--KMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLK-TDLPY-FDI-CVANIPYQIS 134 (359)
Q Consensus 60 VLDIGcGtG~lt~~La~~~--~~V~avDid~~~i~~a~~~~~~~~~~~~v~~i~~D~~~-~~l~~-fD~-VvsNlPy~i~ 134 (359)
|.||||--|++...|++.+ .+|+|+|+++.-++.|++++..+++.+++++..+|.++ ++... .|. |++.+ .
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~l~~~e~~d~ivIAGM----G 76 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLEVLKPGEDVDTIVIAGM----G 76 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGGG--GGG---EEEEEEE-----
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCcccccCCCCCCCEEEEecC----C
Confidence 6899999999999999986 48999999999999999999999888899999999876 33323 664 44433 3
Q ss_pred hHHHHHHHhcC
Q 018261 135 SPLTFKLLFHQ 145 (359)
Q Consensus 135 s~ii~~ll~~~ 145 (359)
...+.++|+..
T Consensus 77 G~lI~~ILe~~ 87 (205)
T PF04816_consen 77 GELIIEILEAG 87 (205)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHhh
Confidence 34455666543
No 227
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=97.32 E-value=0.00073 Score=61.18 Aligned_cols=122 Identities=16% Similarity=0.229 Sum_probs=66.4
Q ss_pred ccccCHHHHHHHHHHc--------CCCCCCEEEEEcCcccH----HHHHHHHc----C---CeEEEEeCCHHHHHHHHHH
Q 018261 37 HILKNPLLVESIVQKA--------GIKSTDVILEIGPGTGN----LTKKLLEA----G---KMVIAVELDSRMVLELQRR 97 (359)
Q Consensus 37 ~fl~d~~v~~~iv~~~--------~~~~~~~VLDIGcGtG~----lt~~La~~----~---~~V~avDid~~~i~~a~~~ 97 (359)
.|+.++...+.+.+.+ .....-+|+-.||+||- ++..|.+. . .+|+|.|+|+.+++.|++-
T Consensus 4 ~FFRd~~~f~~l~~~vlp~~~~~~~~~~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G 83 (196)
T PF01739_consen 4 YFFRDPEQFEALRDEVLPPLLARARPGRPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAG 83 (196)
T ss_dssp -TTTTTTHHHHHHHHHH-------CS-S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHT
T ss_pred cccCCHHHHHHHHHHHHHhhccccCCCCCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhC
Confidence 3556655444444332 12245689999999994 45555551 1 4899999999999999752
Q ss_pred h------hc-------------CC--------CCCCeEEEEccccC-CC-CCCCccccc-ccccccchHHHHHHHhcCch
Q 018261 98 F------QS-------------TP--------YSNRLKVIQGDVLK-TD-LPYFDICVA-NIPYQISSPLTFKLLFHQPA 147 (359)
Q Consensus 98 ~------~~-------------~~--------~~~~v~~i~~D~~~-~~-l~~fD~Vvs-NlPy~i~s~ii~~ll~~~~~ 147 (359)
. .. .+ +..+|+|.+.|..+ .+ ...||+|+| |.-.|...+...+++.
T Consensus 84 ~Y~~~~~~~~~~~~~~ryf~~~~~~~~~v~~~lr~~V~F~~~NL~~~~~~~~~fD~I~CRNVlIYF~~~~~~~vl~---- 159 (196)
T PF01739_consen 84 IYPERSLRGLPPAYLRRYFTERDGGGYRVKPELRKMVRFRRHNLLDPDPPFGRFDLIFCRNVLIYFDPETQQRVLR---- 159 (196)
T ss_dssp EEEGGGGTTS-HHHHHHHEEEE-CCCTTE-HHHHTTEEEEE--TT-S------EEEEEE-SSGGGS-HHHHHHHHH----
T ss_pred CCCHHHHhhhHHHHHHHhccccCCCceeEChHHcCceEEEecccCCCCcccCCccEEEecCEEEEeCHHHHHHHHH----
Confidence 1 00 00 12468888999888 22 237999988 5544444443333332
Q ss_pred hhHHHHHHHHHHHHHHhccCCCeeEEe
Q 018261 148 FRCAIIMFQKEFAMRLVAQPGDKLYCR 174 (359)
Q Consensus 148 ~~~~~~~~qkE~a~Rlv~kpGg~~y~~ 174 (359)
.+.. .++|||.++..
T Consensus 160 ----------~l~~--~L~pgG~L~lG 174 (196)
T PF01739_consen 160 ----------RLHR--SLKPGGYLFLG 174 (196)
T ss_dssp ----------HHGG--GEEEEEEEEE-
T ss_pred ----------HHHH--HcCCCCEEEEe
Confidence 2222 67899988754
No 228
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=97.27 E-value=0.0046 Score=58.84 Aligned_cols=75 Identities=17% Similarity=0.189 Sum_probs=58.6
Q ss_pred CCCCEEEEEcCcccHHHHHHHHc-C---CeEEEEeCCHHHHHHHHHHhhcCCCCCCeEEEEccccCCC-----CCCCccc
Q 018261 55 KSTDVILEIGPGTGNLTKKLLEA-G---KMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTD-----LPYFDIC 125 (359)
Q Consensus 55 ~~~~~VLDIGcGtG~lt~~La~~-~---~~V~avDid~~~i~~a~~~~~~~~~~~~v~~i~~D~~~~~-----l~~fD~V 125 (359)
...-+||||.||.|......+.. . ..|...|.++..++..++..+..++.+-++|.++|+++.. .|.++++
T Consensus 134 g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l~~l~p~P~l~ 213 (311)
T PF12147_consen 134 GRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDSLAALDPAPTLA 213 (311)
T ss_pred CCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhHhhccCCCCCEE
Confidence 35679999999999877766654 2 5799999999999999999999888766699999998743 1245665
Q ss_pred cccc
Q 018261 126 VANI 129 (359)
Q Consensus 126 vsNl 129 (359)
|.+-
T Consensus 214 iVsG 217 (311)
T PF12147_consen 214 IVSG 217 (311)
T ss_pred EEec
Confidence 5443
No 229
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=97.25 E-value=0.0036 Score=59.33 Aligned_cols=124 Identities=19% Similarity=0.275 Sum_probs=76.5
Q ss_pred ccccCHHHHHHHHHHcCC------C-CCCEEEEEcCccc----HHHHHHHHc-------CCeEEEEeCCHHHHHHHHHHh
Q 018261 37 HILKNPLLVESIVQKAGI------K-STDVILEIGPGTG----NLTKKLLEA-------GKMVIAVELDSRMVLELQRRF 98 (359)
Q Consensus 37 ~fl~d~~v~~~iv~~~~~------~-~~~~VLDIGcGtG----~lt~~La~~-------~~~V~avDid~~~i~~a~~~~ 98 (359)
.|+.++.....+.+.+-+ . ..-+|+-+||+|| .++..|.+. ..+|+|.|||..+++.|+.-.
T Consensus 70 ~FFR~~~~f~~l~~~v~p~l~~~~~~~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~ 149 (268)
T COG1352 70 EFFRDPEHFEELRDEVLPELVKRKKGRPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGI 149 (268)
T ss_pred hhccCcHHHHHHHHHHHHHHHhhccCCceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCC
Confidence 366666554444433211 1 3568999999999 355555544 257999999999999997521
Q ss_pred hc-----CC-----------------------CCCCeEEEEccccCCC-CC-CCccccc-ccccccchHHHHHHHhcCch
Q 018261 99 QS-----TP-----------------------YSNRLKVIQGDVLKTD-LP-YFDICVA-NIPYQISSPLTFKLLFHQPA 147 (359)
Q Consensus 99 ~~-----~~-----------------------~~~~v~~i~~D~~~~~-l~-~fD~Vvs-NlPy~i~s~ii~~ll~~~~~ 147 (359)
-. .+ +...|.|-..|.+.-. .. .||+|+| |.-.|...+...+++
T Consensus 150 Y~~~~~~~~~~~~~~~ryF~~~~~~~y~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCRNVLIYFd~~~q~~il----- 224 (268)
T COG1352 150 YPSRELLRGLPPELLRRYFERGGDGSYRVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCRNVLIYFDEETQERIL----- 224 (268)
T ss_pred CChhHhhccCCHHHHhhhEeecCCCcEEEChHHhcccEEeecCCCCCccccCCCCEEEEcceEEeeCHHHHHHHH-----
Confidence 10 00 0124566666766544 33 5999988 665555555444444
Q ss_pred hhHHHHHHHHHHHHHHhccCCCeeEEeec
Q 018261 148 FRCAIIMFQKEFAMRLVAQPGDKLYCRLS 176 (359)
Q Consensus 148 ~~~~~~~~qkE~a~Rlv~kpGg~~y~~ls 176 (359)
+.++. .++|||.++..-+
T Consensus 225 ---------~~f~~--~L~~gG~LflG~s 242 (268)
T COG1352 225 ---------RRFAD--SLKPGGLLFLGHS 242 (268)
T ss_pred ---------HHHHH--HhCCCCEEEEccC
Confidence 34444 6799999885443
No 230
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=97.23 E-value=0.001 Score=62.04 Aligned_cols=94 Identities=23% Similarity=0.318 Sum_probs=63.5
Q ss_pred HHHHHHHHcCCCC-CCEEEEEcCcccHHHHHHHHcCCeEEEEeCCHHHHHHHHHHhhcCCCCCCeEEEEccccCCCCC--
Q 018261 44 LVESIVQKAGIKS-TDVILEIGPGTGNLTKKLLEAGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTDLP-- 120 (359)
Q Consensus 44 v~~~iv~~~~~~~-~~~VLDIGcGtG~lt~~La~~~~~V~avDid~~~i~~a~~~~~~~~~~~~v~~i~~D~~~~~l~-- 120 (359)
-++.|++.+...+ ...|-|+|||-+.++. ..-.+|+++|+-+. |-.++.+|+.+++++
T Consensus 167 Pld~ii~~ik~r~~~~vIaD~GCGEakiA~---~~~~kV~SfDL~a~----------------~~~V~~cDm~~vPl~d~ 227 (325)
T KOG3045|consen 167 PLDVIIRKIKRRPKNIVIADFGCGEAKIAS---SERHKVHSFDLVAV----------------NERVIACDMRNVPLEDE 227 (325)
T ss_pred hHHHHHHHHHhCcCceEEEecccchhhhhh---ccccceeeeeeecC----------------CCceeeccccCCcCccC
Confidence 3566777775544 4578999999998765 33468999997431 456889999998876
Q ss_pred CCcccccccccccchHHHHHHHhcCchhhHHHHHHHHHHHHHHhccCCCeeEEe
Q 018261 121 YFDICVANIPYQISSPLTFKLLFHQPAFRCAIIMFQKEFAMRLVAQPGDKLYCR 174 (359)
Q Consensus 121 ~fD~VvsNlPy~i~s~ii~~ll~~~~~~~~~~~~~qkE~a~Rlv~kpGg~~y~~ 174 (359)
+.|++|..+..-.+ ++...+ +|.. | +++|||.+|..
T Consensus 228 svDvaV~CLSLMgt------------n~~df~----kEa~-R-iLk~gG~l~IA 263 (325)
T KOG3045|consen 228 SVDVAVFCLSLMGT------------NLADFI----KEAN-R-ILKPGGLLYIA 263 (325)
T ss_pred cccEEEeeHhhhcc------------cHHHHH----HHHH-H-HhccCceEEEE
Confidence 78987775532221 111111 5553 4 89999999865
No 231
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=97.21 E-value=0.00043 Score=62.56 Aligned_cols=66 Identities=20% Similarity=0.316 Sum_probs=54.5
Q ss_pred cCCCcccccCHHHHHHHHHHcCC---CCCCEEEEEcCcccHHHHHHHHcCCeEEEEeCCHHHHHHHHHH
Q 018261 32 KSKGQHILKNPLLVESIVQKAGI---KSTDVILEIGPGTGNLTKKLLEAGKMVIAVELDSRMVLELQRR 97 (359)
Q Consensus 32 k~~GQ~fl~d~~v~~~iv~~~~~---~~~~~VLDIGcGtG~lt~~La~~~~~V~avDid~~~i~~a~~~ 97 (359)
-+.|.-|+-+++-.++++..-+. +.+.++||+|+|.|-+|..++..-.+|+|.|.|..|..+++++
T Consensus 85 lgrGsMFifSe~QF~klL~i~~p~w~~~~~~lLDlGAGdGeit~~m~p~feevyATElS~tMr~rL~kk 153 (288)
T KOG3987|consen 85 LGRGSMFIFSEEQFRKLLVIGGPAWGQEPVTLLDLGAGDGEITLRMAPTFEEVYATELSWTMRDRLKKK 153 (288)
T ss_pred cccCceEEecHHHHHHHHhcCCCccCCCCeeEEeccCCCcchhhhhcchHHHHHHHHhhHHHHHHHhhc
Confidence 45677888888888887766533 2346999999999999999988777899999999999998875
No 232
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=97.18 E-value=0.0021 Score=63.88 Aligned_cols=61 Identities=28% Similarity=0.395 Sum_probs=54.1
Q ss_pred EEEEEcCcccHHHHHHHHcC-CeEEEEeCCHHHHHHHHHHhhcCCCCCCeEEEEccccCCCC
Q 018261 59 VILEIGPGTGNLTKKLLEAG-KMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTDL 119 (359)
Q Consensus 59 ~VLDIGcGtG~lt~~La~~~-~~V~avDid~~~i~~a~~~~~~~~~~~~v~~i~~D~~~~~l 119 (359)
.|||||+|||.|+...++.| -.|+|+|.=..|...|++....++..+++++|+.--.++..
T Consensus 69 ~vLdigtGTGLLSmMAvragaD~vtA~EvfkPM~d~arkI~~kng~SdkI~vInkrStev~v 130 (636)
T KOG1501|consen 69 FVLDIGTGTGLLSMMAVRAGADSVTACEVFKPMVDLARKIMHKNGMSDKINVINKRSTEVKV 130 (636)
T ss_pred EEEEccCCccHHHHHHHHhcCCeEEeehhhchHHHHHHHHHhcCCCccceeeeccccceeee
Confidence 58999999999999888875 57999999999999999999999998999999887766553
No 233
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=97.14 E-value=0.0065 Score=48.91 Aligned_cols=69 Identities=26% Similarity=0.423 Sum_probs=46.4
Q ss_pred EEEEcCcccHHHHHHHHcC---CeEEEEeCCHHHHHHHHHHhhcCCCCCCeEEEEccccC--CCCC---CCcccccccc
Q 018261 60 ILEIGPGTGNLTKKLLEAG---KMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLK--TDLP---YFDICVANIP 130 (359)
Q Consensus 60 VLDIGcGtG~lt~~La~~~---~~V~avDid~~~i~~a~~~~~~~~~~~~v~~i~~D~~~--~~l~---~fD~VvsNlP 130 (359)
++|+|||+|..+ .+.... ..++++|+++.++..++..... .....+.++.+|... .++. .||++.+...
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 128 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEG-AGLGLVDFVVADALGGVLPFEDSASFDLVISLLV 128 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhh-cCCCceEEEEeccccCCCCCCCCCceeEEeeeee
Confidence 999999999976 444332 4899999999999986555432 210016788888765 4544 4887744443
No 234
>PRK00536 speE spermidine synthase; Provisional
Probab=97.12 E-value=0.0045 Score=58.54 Aligned_cols=75 Identities=15% Similarity=0.170 Sum_probs=58.0
Q ss_pred CCCCEEEEEcCcccHHHHHHHHcCCeEEEEeCCHHHHHHHHHHhhcCC---CCCCeEEEEccccCCCCCCCcccccccc
Q 018261 55 KSTDVILEIGPGTGNLTKKLLEAGKMVIAVELDSRMVLELQRRFQSTP---YSNRLKVIQGDVLKTDLPYFDICVANIP 130 (359)
Q Consensus 55 ~~~~~VLDIGcGtG~lt~~La~~~~~V~avDid~~~i~~a~~~~~~~~---~~~~v~~i~~D~~~~~l~~fD~VvsNlP 130 (359)
....+||=||-|-|...+++++...+|+-||||+++++.+++.+.... -+.|++++.. +.+.....||+||....
T Consensus 71 ~~pk~VLIiGGGDGg~~REvLkh~~~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~-~~~~~~~~fDVIIvDs~ 148 (262)
T PRK00536 71 KELKEVLIVDGFDLELAHQLFKYDTHVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQ-LLDLDIKKYDLIICLQE 148 (262)
T ss_pred CCCCeEEEEcCCchHHHHHHHCcCCeeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeeh-hhhccCCcCCEEEEcCC
Confidence 456899999999999999999986799999999999999999554311 1348888762 33322347999999854
No 235
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=97.12 E-value=0.0014 Score=59.53 Aligned_cols=101 Identities=24% Similarity=0.293 Sum_probs=55.9
Q ss_pred ccccCHHHHHHHHHHcCCCC-CCEEEEEcCcccHHHHHHHHcCCeEEEEeCCHHHHHHHHHHhhcCCCCCCeEEEEcccc
Q 018261 37 HILKNPLLVESIVQKAGIKS-TDVILEIGPGTGNLTKKLLEAGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVL 115 (359)
Q Consensus 37 ~fl~d~~v~~~iv~~~~~~~-~~~VLDIGcGtG~lt~~La~~~~~V~avDid~~~i~~a~~~~~~~~~~~~v~~i~~D~~ 115 (359)
.+-.+| ++.|++.+.-.+ ...|-|+|||.+.++..+. ...+|...|+-.. |-.++.+|+.
T Consensus 54 ~WP~nP--vd~iI~~l~~~~~~~viaD~GCGdA~la~~~~-~~~~V~SfDLva~----------------n~~Vtacdia 114 (219)
T PF05148_consen 54 KWPVNP--VDVIIEWLKKRPKSLVIADFGCGDAKLAKAVP-NKHKVHSFDLVAP----------------NPRVTACDIA 114 (219)
T ss_dssp TSSS-H--HHHHHHHHCTS-TTS-EEEES-TT-HHHHH---S---EEEEESS-S----------------STTEEES-TT
T ss_pred cCCCCc--HHHHHHHHHhcCCCEEEEECCCchHHHHHhcc-cCceEEEeeccCC----------------CCCEEEecCc
Confidence 344444 577777775444 5689999999999986653 4568999998542 2347889999
Q ss_pred CCCCC--CCcccccccccccchHHHHHHHhcCchhhHHHHHHHHHHHHHHhccCCCeeEEe
Q 018261 116 KTDLP--YFDICVANIPYQISSPLTFKLLFHQPAFRCAIIMFQKEFAMRLVAQPGDKLYCR 174 (359)
Q Consensus 116 ~~~l~--~fD~VvsNlPy~i~s~ii~~ll~~~~~~~~~~~~~qkE~a~Rlv~kpGg~~y~~ 174 (359)
.++++ ..|++|..+..--|. +...+ +|.. | +++|||.++..
T Consensus 115 ~vPL~~~svDv~VfcLSLMGTn------------~~~fi----~EA~-R-vLK~~G~L~IA 157 (219)
T PF05148_consen 115 NVPLEDESVDVAVFCLSLMGTN------------WPDFI----REAN-R-VLKPGGILKIA 157 (219)
T ss_dssp S-S--TT-EEEEEEES---SS-------------HHHHH----HHHH-H-HEEEEEEEEEE
T ss_pred cCcCCCCceeEEEEEhhhhCCC------------cHHHH----HHHH-h-eeccCcEEEEE
Confidence 98887 689888776432221 11112 4553 4 89999998654
No 236
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=97.08 E-value=0.0019 Score=58.29 Aligned_cols=130 Identities=21% Similarity=0.312 Sum_probs=74.2
Q ss_pred CCCEEEEEcCcccHHHHHHHHc--CCeEEEEeCCHHHHHHHHHHhhcCC------CCCCeEEEEccccCCCCCCCccc-c
Q 018261 56 STDVILEIGPGTGNLTKKLLEA--GKMVIAVELDSRMVLELQRRFQSTP------YSNRLKVIQGDVLKTDLPYFDIC-V 126 (359)
Q Consensus 56 ~~~~VLDIGcGtG~lt~~La~~--~~~V~avDid~~~i~~a~~~~~~~~------~~~~v~~i~~D~~~~~l~~fD~V-v 126 (359)
..-.+.|||||-|.+...|+.. ..-++|.||--...++.++++.... ...|+.++..++..+-...|..- .
T Consensus 60 ~kvefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~lpn~f~kgqL 139 (249)
T KOG3115|consen 60 KKVEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKFLPNFFEKGQL 139 (249)
T ss_pred ccceEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchhhccchhhhccc
Confidence 3456899999999999999977 3679999999888888877765322 12367777777776543222211 1
Q ss_pred cccccccchHHHHHHHhcCchhhHHHHHHHHHHHHHHhccCCCeeEEeecchhhhHHhhhhhhc
Q 018261 127 ANIPYQISSPLTFKLLFHQPAFRCAIIMFQKEFAMRLVAQPGDKLYCRLSVNTQLHARVSHLLK 190 (359)
Q Consensus 127 sNlPy~i~s~ii~~ll~~~~~~~~~~~~~qkE~a~Rlv~kpGg~~y~~lsv~~q~~~~v~~l~~ 190 (359)
+-.++-..+|- ++-..|...+....++ .|++- ++++||.+|...-+..-....+.++..
T Consensus 140 skmff~fpdpH-fk~~khk~rii~~~l~--~eyay--~l~~gg~~ytitDv~elh~wm~~~~e~ 198 (249)
T KOG3115|consen 140 SKMFFLFPDPH-FKARKHKWRIITSTLL--SEYAY--VLREGGILYTITDVKELHEWMVKHLEE 198 (249)
T ss_pred ccceeecCChh-HhhhhccceeechhHH--HHHHh--hhhcCceEEEEeeHHHHHHHHHHHHHh
Confidence 11111112222 2222222222111111 46654 789999999765554333334444433
No 237
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=97.02 E-value=0.0021 Score=57.67 Aligned_cols=68 Identities=26% Similarity=0.274 Sum_probs=53.8
Q ss_pred EEEEEcCcccHHHHHHHH--cCCeEEEEeCCHHHHHHHHHHhhcCCCCCCeEEEEccccC-CCCCCCccccc
Q 018261 59 VILEIGPGTGNLTKKLLE--AGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLK-TDLPYFDICVA 127 (359)
Q Consensus 59 ~VLDIGcGtG~lt~~La~--~~~~V~avDid~~~i~~a~~~~~~~~~~~~v~~i~~D~~~-~~l~~fD~Vvs 127 (359)
+++|||+|-|.=++.|+= -..+|+.+|....-+..++......++. |++++++.+++ .....||+|++
T Consensus 51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L~-nv~v~~~R~E~~~~~~~fd~v~a 121 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGLS-NVEVINGRAEEPEYRESFDVVTA 121 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT-S-SEEEEES-HHHTTTTT-EEEEEE
T ss_pred eEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCCC-CEEEEEeeecccccCCCccEEEe
Confidence 899999999987666653 3578999999999999998887777764 89999999998 33347998877
No 238
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=96.92 E-value=0.0023 Score=58.68 Aligned_cols=70 Identities=16% Similarity=0.210 Sum_probs=57.9
Q ss_pred CCEEEEEcCcccHHHHHHH--HcCCeEEEEeCCHHHHHHHHHHhhcCCCCCCeEEEEccccCCCCC-C-Cccccc
Q 018261 57 TDVILEIGPGTGNLTKKLL--EAGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTDLP-Y-FDICVA 127 (359)
Q Consensus 57 ~~~VLDIGcGtG~lt~~La--~~~~~V~avDid~~~i~~a~~~~~~~~~~~~v~~i~~D~~~~~l~-~-fD~Vvs 127 (359)
+.+++|||+|.|.=+..|+ ....+|+-+|....-+..+++.....++. |++++++.++++... . ||+|+|
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~L~-nv~i~~~RaE~~~~~~~~~D~vts 141 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELGLE-NVEIVHGRAEEFGQEKKQYDVVTS 141 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhCCC-CeEEehhhHhhcccccccCcEEEe
Confidence 5899999999998777765 33567999999999999998887777664 899999999987743 4 998876
No 239
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=96.91 E-value=0.0044 Score=59.18 Aligned_cols=78 Identities=17% Similarity=0.342 Sum_probs=68.6
Q ss_pred cccCHHHHHHHHHHcCCCCCCEEEEEcCcccHHHHHHHHcC---CeEEEEeCCHHHHHHHHHHhhcCCCCCCeEEEEccc
Q 018261 38 ILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEAG---KMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDV 114 (359)
Q Consensus 38 fl~d~~v~~~iv~~~~~~~~~~VLDIGcGtG~lt~~La~~~---~~V~avDid~~~i~~a~~~~~~~~~~~~v~~i~~D~ 114 (359)
|..-+-+++.+++.+.+.++...+|.--|-|..+..+++.. .+++|+|.|+.+++.|++++..++ +++.++++.+
T Consensus 5 ~~HipVLl~E~i~~L~~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~--~r~~~v~~~F 82 (314)
T COG0275 5 FRHIPVLLNEVVELLAPKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFD--GRVTLVHGNF 82 (314)
T ss_pred CCccchHHHHHHHhcccCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccC--CcEEEEeCcH
Confidence 34457789999999999999999999999999999999874 679999999999999999987755 5999999987
Q ss_pred cCC
Q 018261 115 LKT 117 (359)
Q Consensus 115 ~~~ 117 (359)
.++
T Consensus 83 ~~l 85 (314)
T COG0275 83 ANL 85 (314)
T ss_pred HHH
Confidence 654
No 240
>KOG4058 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.90 E-value=0.0017 Score=55.71 Aligned_cols=80 Identities=18% Similarity=0.279 Sum_probs=65.3
Q ss_pred HHHHHHHcCCCCCCEEEEEcCcccHHHHHHHHcC-CeEEEEeCCHHHHHHHHHHhhcCCCCCCeEEEEccccCCCCCCCc
Q 018261 45 VESIVQKAGIKSTDVILEIGPGTGNLTKKLLEAG-KMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTDLPYFD 123 (359)
Q Consensus 45 ~~~iv~~~~~~~~~~VLDIGcGtG~lt~~La~~~-~~V~avDid~~~i~~a~~~~~~~~~~~~v~~i~~D~~~~~l~~fD 123 (359)
++.++..+.-.+..+.+|+|.|.|.+..+.++.+ ..-+|+|++|-++..++-+.-..++.+...|..-|+.++++..+.
T Consensus 61 v~nVLSll~~n~~GklvDlGSGDGRiVlaaar~g~~~a~GvELNpwLVaysrl~a~R~g~~k~trf~RkdlwK~dl~dy~ 140 (199)
T KOG4058|consen 61 VENVLSLLRGNPKGKLVDLGSGDGRIVLAAARCGLRPAVGVELNPWLVAYSRLHAWRAGCAKSTRFRRKDLWKVDLRDYR 140 (199)
T ss_pred HHHHHHHccCCCCCcEEeccCCCceeehhhhhhCCCcCCceeccHHHHHHHHHHHHHHhcccchhhhhhhhhhccccccc
Confidence 3444556655566789999999999999998887 678999999999999988776667777889999999999887554
Q ss_pred c
Q 018261 124 I 124 (359)
Q Consensus 124 ~ 124 (359)
.
T Consensus 141 ~ 141 (199)
T KOG4058|consen 141 N 141 (199)
T ss_pred e
Confidence 3
No 241
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=96.90 E-value=0.0026 Score=58.21 Aligned_cols=72 Identities=17% Similarity=0.123 Sum_probs=49.4
Q ss_pred CCCEEEEEcCcccHHHHHHH-HcCCeEEEEeCCHHHHHHHHHHhhcCCCCCCeEEEEccccCCCCC--CCcccccc
Q 018261 56 STDVILEIGPGTGNLTKKLL-EAGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTDLP--YFDICVAN 128 (359)
Q Consensus 56 ~~~~VLDIGcGtG~lt~~La-~~~~~V~avDid~~~i~~a~~~~~~~~~~~~v~~i~~D~~~~~l~--~fD~VvsN 128 (359)
...+.||.|+|.|..|..|+ ....+|-.||..+.+++.|++.+.... ..-.++.+.-+.++.++ .||+|++.
T Consensus 55 ~~~~alDcGAGIGRVTk~lLl~~f~~VDlVEp~~~Fl~~a~~~l~~~~-~~v~~~~~~gLQ~f~P~~~~YDlIW~Q 129 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLLLPVFDEVDLVEPVEKFLEQAKEYLGKDN-PRVGEFYCVGLQDFTPEEGKYDLIWIQ 129 (218)
T ss_dssp --SEEEEET-TTTHHHHHTCCCC-SEEEEEES-HHHHHHHHHHTCCGG-CCEEEEEES-GGG----TT-EEEEEEE
T ss_pred CcceEEecccccchhHHHHHHHhcCEeEEeccCHHHHHHHHHHhcccC-CCcceEEecCHhhccCCCCcEeEEEeh
Confidence 45689999999999998775 446899999999999999998775511 12456788888877654 79999874
No 242
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=96.89 E-value=0.002 Score=62.22 Aligned_cols=76 Identities=18% Similarity=0.365 Sum_probs=59.2
Q ss_pred cCHHHHHHHHHHcCCCCCCEEEEEcCcccHHHHHHHHc--CCeEEEEeCCHHHHHHHHHHhhcCCCCCCeEEEEccccCC
Q 018261 40 KNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEA--GKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKT 117 (359)
Q Consensus 40 ~d~~v~~~iv~~~~~~~~~~VLDIGcGtG~lt~~La~~--~~~V~avDid~~~i~~a~~~~~~~~~~~~v~~i~~D~~~~ 117 (359)
.-|-+++.+++.+.+.++..++|.=-|.|..|..+++. ..+|+|+|.|+.+++.+++++..+ .+++.++++++.++
T Consensus 4 H~PVll~Evl~~L~~~~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~~~--~~r~~~~~~~F~~l 81 (310)
T PF01795_consen 4 HIPVLLKEVLEALNPKPGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLKKF--DDRFIFIHGNFSNL 81 (310)
T ss_dssp ---TTHHHHHHHHT--TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTCCC--CTTEEEEES-GGGH
T ss_pred eecccHHHHHHhhCcCCCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHhhc--cceEEEEeccHHHH
Confidence 34668899999999999999999999999999999986 589999999999999999988765 35999999998764
No 243
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=96.89 E-value=0.015 Score=55.35 Aligned_cols=71 Identities=25% Similarity=0.331 Sum_probs=44.3
Q ss_pred CEEEEEcCcccHHHHHHHH-c---CCeEEEEeCCHHHHHHHHHHhh-cCCCCCCeEEEEccccCCC--CCCCcccccc
Q 018261 58 DVILEIGPGTGNLTKKLLE-A---GKMVIAVELDSRMVLELQRRFQ-STPYSNRLKVIQGDVLKTD--LPYFDICVAN 128 (359)
Q Consensus 58 ~~VLDIGcGtG~lt~~La~-~---~~~V~avDid~~~i~~a~~~~~-~~~~~~~v~~i~~D~~~~~--l~~fD~VvsN 128 (359)
.+|+=||+|+=-+|..+.. . +..|+++|+|+.+++.+++.+. ..++..+++|+++|+.+.. +..||+|+..
T Consensus 122 ~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl~~~DvV~lA 199 (276)
T PF03059_consen 122 SRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYDLKEYDVVFLA 199 (276)
T ss_dssp -EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG----SEEEE-
T ss_pred ceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhccccccccCCEEEEh
Confidence 4999999998777765553 2 3679999999999999998877 3445568999999998754 4578976543
No 244
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=96.86 E-value=0.0021 Score=61.14 Aligned_cols=71 Identities=30% Similarity=0.460 Sum_probs=57.4
Q ss_pred EEEEEcCcccHHHHHHHHcCC-eEEEEeCCHHHHHHHHHHhhcCCCCCCeEEEEccccCCC----CCCCccccccccccc
Q 018261 59 VILEIGPGTGNLTKKLLEAGK-MVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTD----LPYFDICVANIPYQI 133 (359)
Q Consensus 59 ~VLDIGcGtG~lt~~La~~~~-~V~avDid~~~i~~a~~~~~~~~~~~~v~~i~~D~~~~~----l~~fD~VvsNlPy~i 133 (359)
+|+|+.||.|.++..+.+.|. .|+++|+++.+++..+.+... .++++|+.++. .+.+|++++.+|.+-
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~G~~~v~a~e~~~~a~~~~~~N~~~-------~~~~~Di~~~~~~~~~~~~D~l~~gpPCq~ 74 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKAGFEIVAANEIDKSAAETYEANFPN-------KLIEGDITKIDEKDFIPDIDLLTGGFPCQP 74 (275)
T ss_pred cEEEEccCcchHHHHHHHcCCEEEEEEeCCHHHHHHHHHhCCC-------CCccCccccCchhhcCCCCCEEEeCCCChh
Confidence 689999999999999988875 478999999999999888642 15677877754 346899999999885
Q ss_pred chH
Q 018261 134 SSP 136 (359)
Q Consensus 134 ~s~ 136 (359)
.|.
T Consensus 75 fS~ 77 (275)
T cd00315 75 FSI 77 (275)
T ss_pred hhH
Confidence 554
No 245
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=96.77 E-value=0.0067 Score=55.69 Aligned_cols=85 Identities=20% Similarity=0.341 Sum_probs=57.5
Q ss_pred HHHHHHHH---HcCCCCCCEEEEEcCcccHHHHHHHHc---CCeEEEEeCCHHHHHHHHHHhhcCCCCCCeEEEEccccC
Q 018261 43 LLVESIVQ---KAGIKSTDVILEIGPGTGNLTKKLLEA---GKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLK 116 (359)
Q Consensus 43 ~v~~~iv~---~~~~~~~~~VLDIGcGtG~lt~~La~~---~~~V~avDid~~~i~~a~~~~~~~~~~~~v~~i~~D~~~ 116 (359)
.+...|+. .+.+.++.+||-+|..+|.-..+++.- ...|+|||.+++....+-...+... |+--+.+|+..
T Consensus 57 KLaAai~~Gl~~~~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R~---NIiPIl~DAr~ 133 (229)
T PF01269_consen 57 KLAAAILKGLENIPIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKRP---NIIPILEDARH 133 (229)
T ss_dssp HHHHHHHTT-S--S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHST---TEEEEES-TTS
T ss_pred HHHHHHHcCccccCCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccCC---ceeeeeccCCC
Confidence 44555543 345778999999999999988888876 3599999999977666655555444 88889999975
Q ss_pred CC-----CCCCcccccccc
Q 018261 117 TD-----LPYFDICVANIP 130 (359)
Q Consensus 117 ~~-----l~~fD~VvsNlP 130 (359)
.. .+.+|+|+++.+
T Consensus 134 P~~Y~~lv~~VDvI~~DVa 152 (229)
T PF01269_consen 134 PEKYRMLVEMVDVIFQDVA 152 (229)
T ss_dssp GGGGTTTS--EEEEEEE-S
T ss_pred hHHhhcccccccEEEecCC
Confidence 22 235788988764
No 246
>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]
Probab=96.73 E-value=0.01 Score=58.08 Aligned_cols=81 Identities=27% Similarity=0.383 Sum_probs=62.0
Q ss_pred HcCCCCCCEEEEEcCcccHHHHHHHHcCC------eEEEEeCCHHHHHHHHHHhhcCCCCCCeEEEEccccCCC------
Q 018261 51 KAGIKSTDVILEIGPGTGNLTKKLLEAGK------MVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTD------ 118 (359)
Q Consensus 51 ~~~~~~~~~VLDIGcGtG~lt~~La~~~~------~V~avDid~~~i~~a~~~~~~~~~~~~v~~i~~D~~~~~------ 118 (359)
.+++.++++|||+|+-+|.=|..|++... .|+|-|.|+.-+..+...+...+ ..++.+...|+..++
T Consensus 150 ~L~v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~-~~~~~v~~~~~~~~p~~~~~~ 228 (375)
T KOG2198|consen 150 ALGVKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLP-SPNLLVTNHDASLFPNIYLKD 228 (375)
T ss_pred hcccCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccC-Ccceeeecccceecccccccc
Confidence 45788999999999999999999988732 89999999999888888775443 235556666554332
Q ss_pred -----CCCCcccccccccc
Q 018261 119 -----LPYFDICVANIPYQ 132 (359)
Q Consensus 119 -----l~~fD~VvsNlPy~ 132 (359)
...||.|++..|..
T Consensus 229 ~~~~~~~~fDrVLvDVPCS 247 (375)
T KOG2198|consen 229 GNDKEQLKFDRVLVDVPCS 247 (375)
T ss_pred CchhhhhhcceeEEecccC
Confidence 12599999999875
No 247
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=96.71 E-value=0.0067 Score=55.46 Aligned_cols=86 Identities=23% Similarity=0.286 Sum_probs=66.6
Q ss_pred CCCCEEEEEcCcccHHHHHHHHcC--CeEEEEeCCHHHHHHHHHHhhcCCCCCCeEEEEccccCC-CCC-CCccc-cccc
Q 018261 55 KSTDVILEIGPGTGNLTKKLLEAG--KMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKT-DLP-YFDIC-VANI 129 (359)
Q Consensus 55 ~~~~~VLDIGcGtG~lt~~La~~~--~~V~avDid~~~i~~a~~~~~~~~~~~~v~~i~~D~~~~-~l~-~fD~V-vsNl 129 (359)
..+.++.||||=-|+|...|.+.+ ..+++.|+++..+..|.+++..+++..++++..+|.+.. ... .+|.| |+.+
T Consensus 15 ~~~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dgl~~l~~~d~~d~ivIAGM 94 (226)
T COG2384 15 KQGARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDGLAVLELEDEIDVIVIAGM 94 (226)
T ss_pred HcCCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCCccccCccCCcCEEEEeCC
Confidence 345569999999999999999874 789999999999999999999988888999999998753 222 47754 4433
Q ss_pred ccccchHHHHHHHhc
Q 018261 130 PYQISSPLTFKLLFH 144 (359)
Q Consensus 130 Py~i~s~ii~~ll~~ 144 (359)
....+..+|+.
T Consensus 95 ----GG~lI~~ILee 105 (226)
T COG2384 95 ----GGTLIREILEE 105 (226)
T ss_pred ----cHHHHHHHHHH
Confidence 34455556553
No 248
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=96.61 E-value=0.01 Score=57.75 Aligned_cols=68 Identities=16% Similarity=0.229 Sum_probs=50.6
Q ss_pred HHHHHHcCCCCCCEEEEEcCcccHHHHHHHHc------CCeEEEEeCCHHHHHHHHHHhhcCCCCCCeEE--EEccccC
Q 018261 46 ESIVQKAGIKSTDVILEIGPGTGNLTKKLLEA------GKMVIAVELDSRMVLELQRRFQSTPYSNRLKV--IQGDVLK 116 (359)
Q Consensus 46 ~~iv~~~~~~~~~~VLDIGcGtG~lt~~La~~------~~~V~avDid~~~i~~a~~~~~~~~~~~~v~~--i~~D~~~ 116 (359)
..|+..+ .++..|+|+|||+|.-|..|++. ..+.++||+|..+++.+.+++....+ ..+++ +++|+.+
T Consensus 68 ~~Ia~~i--~~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~-p~l~v~~l~gdy~~ 143 (319)
T TIGR03439 68 SDIAASI--PSGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNF-SHVRCAGLLGTYDD 143 (319)
T ss_pred HHHHHhc--CCCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccC-CCeEEEEEEecHHH
Confidence 4455554 46678999999999988877654 25799999999999999998872111 14555 8888865
No 249
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=96.59 E-value=0.0073 Score=57.52 Aligned_cols=61 Identities=16% Similarity=0.183 Sum_probs=45.8
Q ss_pred HHHHHHHHHHcCCCCCCEEEEEcCcccHHHHHHHHc---CCeEEEEeCCHHHHHHHHHHhhcCC
Q 018261 42 PLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEA---GKMVIAVELDSRMVLELQRRFQSTP 102 (359)
Q Consensus 42 ~~v~~~iv~~~~~~~~~~VLDIGcGtG~lt~~La~~---~~~V~avDid~~~i~~a~~~~~~~~ 102 (359)
..++..+..........+|||+|||+|.-+.++.+. -.++++||.|+.|++.++..+....
T Consensus 19 ~~vl~El~~r~p~f~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~ 82 (274)
T PF09243_consen 19 YRVLSELRKRLPDFRPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGP 82 (274)
T ss_pred HHHHHHHHHhCcCCCCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhccc
Confidence 445555555554445679999999999877766553 3689999999999999988776543
No 250
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=96.56 E-value=0.0075 Score=54.45 Aligned_cols=57 Identities=21% Similarity=0.339 Sum_probs=45.9
Q ss_pred ccCHHHHHHHHHHcCCCCCCEEEEEcCcccHHHHHHHHcCCeEEEEeCCHHHHHHHHH
Q 018261 39 LKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEAGKMVIAVELDSRMVLELQR 96 (359)
Q Consensus 39 l~d~~v~~~iv~~~~~~~~~~VLDIGcGtG~lt~~La~~~~~V~avDid~~~i~~a~~ 96 (359)
..+..++++++.... .+++.|||.-||+|+-+.+..+.+.+.+|+|+++..++.|++
T Consensus 175 ~kP~~l~~~lI~~~t-~~gdiVlDpF~GSGTT~~aa~~l~R~~ig~E~~~~y~~~a~~ 231 (231)
T PF01555_consen 175 QKPVELIERLIKAST-NPGDIVLDPFAGSGTTAVAAEELGRRYIGIEIDEEYCEIAKK 231 (231)
T ss_dssp -S-HHHHHHHHHHHS--TT-EEEETT-TTTHHHHHHHHTT-EEEEEESSHHHHHHHHH
T ss_pred cCCHHHHHHHHHhhh-ccceeeehhhhccChHHHHHHHcCCeEEEEeCCHHHHHHhcC
Confidence 356789999998874 578999999999999888888889999999999999998864
No 251
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=96.55 E-value=0.036 Score=52.64 Aligned_cols=41 Identities=27% Similarity=0.264 Sum_probs=36.0
Q ss_pred CCCEEEEEcCcccHHHHHHHHcCCeEEEEeCCHHHHHHHHH
Q 018261 56 STDVILEIGPGTGNLTKKLLEAGKMVIAVELDSRMVLELQR 96 (359)
Q Consensus 56 ~~~~VLDIGcGtG~lt~~La~~~~~V~avDid~~~i~~a~~ 96 (359)
...+||=.|||.|.|+..++.+|..|.|.|.|--|+-..+-
T Consensus 56 ~~~~VLVPGsGLGRLa~Eia~~G~~~~gnE~S~~Mll~s~f 96 (270)
T PF07942_consen 56 SKIRVLVPGSGLGRLAWEIAKLGYAVQGNEFSYFMLLASNF 96 (270)
T ss_pred CccEEEEcCCCcchHHHHHhhccceEEEEEchHHHHHHHHH
Confidence 34689999999999999999999999999999999655443
No 252
>PRK11524 putative methyltransferase; Provisional
Probab=96.51 E-value=0.0096 Score=56.90 Aligned_cols=58 Identities=19% Similarity=0.287 Sum_probs=51.9
Q ss_pred CHHHHHHHHHHcCCCCCCEEEEEcCcccHHHHHHHHcCCeEEEEeCCHHHHHHHHHHhh
Q 018261 41 NPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEAGKMVIAVELDSRMVLELQRRFQ 99 (359)
Q Consensus 41 d~~v~~~iv~~~~~~~~~~VLDIGcGtG~lt~~La~~~~~V~avDid~~~i~~a~~~~~ 99 (359)
+..++++++.... .+++.|||.-||+|.-+.+..+.+.+.+|+|++++.++.|++++.
T Consensus 194 P~~L~erlI~~~S-~~GD~VLDPF~GSGTT~~AA~~lgR~~IG~Ei~~~Y~~~a~~Rl~ 251 (284)
T PRK11524 194 PEALLKRIILASS-NPGDIVLDPFAGSFTTGAVAKASGRKFIGIEINSEYIKMGLRRLD 251 (284)
T ss_pred hHHHHHHHHHHhC-CCCCEEEECCCCCcHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHH
Confidence 4678899988874 589999999999999888888889999999999999999999975
No 253
>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=96.48 E-value=0.0038 Score=57.39 Aligned_cols=80 Identities=18% Similarity=0.236 Sum_probs=55.7
Q ss_pred CCCEEEEEcCcccHHHHHHHHc--CCeEEEEeCCHHHHHHHHHHhhcC-CCCCCeEEEEc-cccCC-C-----CCCCccc
Q 018261 56 STDVILEIGPGTGNLTKKLLEA--GKMVIAVELDSRMVLELQRRFQST-PYSNRLKVIQG-DVLKT-D-----LPYFDIC 125 (359)
Q Consensus 56 ~~~~VLDIGcGtG~lt~~La~~--~~~V~avDid~~~i~~a~~~~~~~-~~~~~v~~i~~-D~~~~-~-----l~~fD~V 125 (359)
+.-++||||.|.-++--.+-.+ |.+.+|-|+|+..++.|+..+..+ ++...+++... |-..+ + -+.||.+
T Consensus 78 ~~i~~LDIGvGAnCIYPliG~~eYgwrfvGseid~~sl~sA~~ii~~N~~l~~~I~lr~qk~~~~if~giig~nE~yd~t 157 (292)
T COG3129 78 KNIRILDIGVGANCIYPLIGVHEYGWRFVGSEIDSQSLSSAKAIISANPGLERAIRLRRQKDSDAIFNGIIGKNERYDAT 157 (292)
T ss_pred CceEEEeeccCcccccccccceeecceeecCccCHHHHHHHHHHHHcCcchhhheeEEeccCccccccccccccceeeeE
Confidence 4568999999876654333222 789999999999999999998877 34444555433 21111 0 1369999
Q ss_pred ccccccccch
Q 018261 126 VANIPYQISS 135 (359)
Q Consensus 126 vsNlPy~i~s 135 (359)
.||+|||-+.
T Consensus 158 lCNPPFh~s~ 167 (292)
T COG3129 158 LCNPPFHDSA 167 (292)
T ss_pred ecCCCcchhH
Confidence 9999999664
No 254
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=96.39 E-value=0.013 Score=52.27 Aligned_cols=70 Identities=24% Similarity=0.465 Sum_probs=49.9
Q ss_pred CCCCCEEEEEcCcccHHHHHHHHcC---CeEEEEeCCHHHHHHHHHHhhcCCCCCCeEEEEc-cccCCC--------CC-
Q 018261 54 IKSTDVILEIGPGTGNLTKKLLEAG---KMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQG-DVLKTD--------LP- 120 (359)
Q Consensus 54 ~~~~~~VLDIGcGtG~lt~~La~~~---~~V~avDid~~~i~~a~~~~~~~~~~~~v~~i~~-D~~~~~--------l~- 120 (359)
+.++++|||+||.+|.+++-..++. ..|.|||+-+-. +. ..+.++++ |+.+.. ++
T Consensus 67 l~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~~-----------p~-~Ga~~i~~~dvtdp~~~~ki~e~lp~ 134 (232)
T KOG4589|consen 67 LRPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHIE-----------PP-EGATIIQGNDVTDPETYRKIFEALPN 134 (232)
T ss_pred cCCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeecc-----------CC-CCcccccccccCCHHHHHHHHHhCCC
Confidence 3578999999999999999888773 689999974321 11 14666666 776532 22
Q ss_pred -CCcccccccccccch
Q 018261 121 -YFDICVANIPYQISS 135 (359)
Q Consensus 121 -~fD~VvsNlPy~i~s 135 (359)
..|+|+|.+.-+.|.
T Consensus 135 r~VdvVlSDMapnaTG 150 (232)
T KOG4589|consen 135 RPVDVVLSDMAPNATG 150 (232)
T ss_pred CcccEEEeccCCCCcC
Confidence 578999988766664
No 255
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=96.31 E-value=0.014 Score=56.77 Aligned_cols=95 Identities=21% Similarity=0.317 Sum_probs=69.1
Q ss_pred CCEEEEEcCcccHHHHHHHHcCCeEEEEeCCHHHHHHHHHHhhcCCCCCCeEEEEccccCCCCCCCccccccc-ccccch
Q 018261 57 TDVILEIGPGTGNLTKKLLEAGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTDLPYFDICVANI-PYQISS 135 (359)
Q Consensus 57 ~~~VLDIGcGtG~lt~~La~~~~~V~avDid~~~i~~a~~~~~~~~~~~~v~~i~~D~~~~~l~~fD~VvsNl-Py~i~s 135 (359)
-...+|+|.|.|.++..++..-.+|-++++|...+-.++..+. . .|+.+-+|+++- .|.-|+|+.-- --+|++
T Consensus 178 v~~avDvGgGiG~v~k~ll~~fp~ik~infdlp~v~~~a~~~~-~----gV~~v~gdmfq~-~P~~daI~mkWiLhdwtD 251 (342)
T KOG3178|consen 178 VNVAVDVGGGIGRVLKNLLSKYPHIKGINFDLPFVLAAAPYLA-P----GVEHVAGDMFQD-TPKGDAIWMKWILHDWTD 251 (342)
T ss_pred CceEEEcCCcHhHHHHHHHHhCCCCceeecCHHHHHhhhhhhc-C----Ccceeccccccc-CCCcCeEEEEeecccCCh
Confidence 3689999999999999999876779999999999888877764 2 478899999986 78888777532 123343
Q ss_pred HHHHHHHhcCchhhHHHHHHHHHHHHHHhccCCCeeEE
Q 018261 136 PLTFKLLFHQPAFRCAIIMFQKEFAMRLVAQPGDKLYC 173 (359)
Q Consensus 136 ~ii~~ll~~~~~~~~~~~~~qkE~a~Rlv~kpGg~~y~ 173 (359)
.-..++| +..++ .++|||++..
T Consensus 252 edcvkiL--------------knC~~--sL~~~GkIiv 273 (342)
T KOG3178|consen 252 EDCVKIL--------------KNCKK--SLPPGGKIIV 273 (342)
T ss_pred HHHHHHH--------------HHHHH--hCCCCCEEEE
Confidence 3333333 23333 6789998764
No 256
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=96.31 E-value=0.0093 Score=55.33 Aligned_cols=86 Identities=21% Similarity=0.326 Sum_probs=54.5
Q ss_pred HHHHHcCCCCCC--EEEEEcCcccHHHHHHHHcCCeEEEEeCCHHHHHHHHHHhhc---CC-C----CCCeEEEEccccC
Q 018261 47 SIVQKAGIKSTD--VILEIGPGTGNLTKKLLEAGKMVIAVELDSRMVLELQRRFQS---TP-Y----SNRLKVIQGDVLK 116 (359)
Q Consensus 47 ~iv~~~~~~~~~--~VLDIGcGtG~lt~~La~~~~~V~avDid~~~i~~a~~~~~~---~~-~----~~~v~~i~~D~~~ 116 (359)
.+++++++.++. +|||.=+|.|.-+..|+..|.+|+++|-||-+...++.-+.. .. . ..+++++++|..+
T Consensus 64 ~l~kA~Glk~~~~~~VLDaTaGLG~Da~vlA~~G~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~~~ 143 (234)
T PF04445_consen 64 PLAKAVGLKPGMRPSVLDATAGLGRDAFVLASLGCKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDALE 143 (234)
T ss_dssp HHHHHTT-BTTB---EEETT-TTSHHHHHHHHHT--EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-CCC
T ss_pred HHHHHhCCCCCCCCEEEECCCcchHHHHHHHccCCeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCHHH
Confidence 466777777664 899999999999999998899999999999988877654321 11 1 1379999999877
Q ss_pred C-C--CCCCcccccccccc
Q 018261 117 T-D--LPYFDICVANIPYQ 132 (359)
Q Consensus 117 ~-~--l~~fD~VvsNlPy~ 132 (359)
+ . ..+||+|+..+-|.
T Consensus 144 ~L~~~~~s~DVVY~DPMFp 162 (234)
T PF04445_consen 144 YLRQPDNSFDVVYFDPMFP 162 (234)
T ss_dssp HCCCHSS--SEEEE--S--
T ss_pred HHhhcCCCCCEEEECCCCC
Confidence 3 2 34799999988765
No 257
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=96.30 E-value=0.0096 Score=55.60 Aligned_cols=70 Identities=23% Similarity=0.261 Sum_probs=50.7
Q ss_pred CCCCEEEEEcCcccHHHHHHHHc--CCeEEEEeCCHHHHHHHHHHhhcCCCCCCeEEEEccccCCCCC-CCcccc
Q 018261 55 KSTDVILEIGPGTGNLTKKLLEA--GKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTDLP-YFDICV 126 (359)
Q Consensus 55 ~~~~~VLDIGcGtG~lt~~La~~--~~~V~avDid~~~i~~a~~~~~~~~~~~~v~~i~~D~~~~~l~-~fD~Vv 126 (359)
.+..+|+|||||.=-++..+... +..++|+|||..+++.+..-+...+. +.++...|.+.-..+ ..|+..
T Consensus 104 ~~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l~~--~~~~~v~Dl~~~~~~~~~DlaL 176 (251)
T PF07091_consen 104 PPPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVLGV--PHDARVRDLLSDPPKEPADLAL 176 (251)
T ss_dssp ---SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHTT---CEEEEEE-TTTSHTTSEESEEE
T ss_pred CCCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhhCC--CcceeEeeeeccCCCCCcchhh
Confidence 45789999999999999887765 47999999999999999998776654 677778888875433 466544
No 258
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=96.26 E-value=0.0099 Score=54.32 Aligned_cols=99 Identities=20% Similarity=0.230 Sum_probs=63.1
Q ss_pred CHHHHHHHHHHcCCCC----CCEEEEEcCcccHHHHHHHHcCCeEEEEeCCHHHHHHHHHHhhcCCCCCCeEEEEccccC
Q 018261 41 NPLLVESIVQKAGIKS----TDVILEIGPGTGNLTKKLLEAGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLK 116 (359)
Q Consensus 41 d~~v~~~iv~~~~~~~----~~~VLDIGcGtG~lt~~La~~~~~V~avDid~~~i~~a~~~~~~~~~~~~v~~i~~D~~~ 116 (359)
+..+++++-+...... .-++|||||=+......-. .-..|++||+.+. .-.+...|+++
T Consensus 32 SK~lv~wL~~~~~~~~~~~~~lrlLEVGals~~N~~s~~-~~fdvt~IDLns~----------------~~~I~qqDFm~ 94 (219)
T PF11968_consen 32 SKWLVEWLKELGVRPKNGRPKLRLLEVGALSTDNACSTS-GWFDVTRIDLNSQ----------------HPGILQQDFME 94 (219)
T ss_pred hHHHHHHhhhhccccccccccceEEeecccCCCCccccc-CceeeEEeecCCC----------------CCCceeecccc
Confidence 4555666655543222 2589999997554432211 1256999999873 23478999999
Q ss_pred CCCC-----CCcccccccccccchHHHHHHHhcCchhhHHHHHHHHHHHHHHhccCCCe
Q 018261 117 TDLP-----YFDICVANIPYQISSPLTFKLLFHQPAFRCAIIMFQKEFAMRLVAQPGDK 170 (359)
Q Consensus 117 ~~l~-----~fD~VvsNlPy~i~s~ii~~ll~~~~~~~~~~~~~qkE~a~Rlv~kpGg~ 170 (359)
.++| .||+|++++ +|+..|.+..---|+++ +.+ .++|+|.
T Consensus 95 rplp~~~~e~FdvIs~SL-----------VLNfVP~p~~RG~Ml~r--~~~-fL~~~g~ 139 (219)
T PF11968_consen 95 RPLPKNESEKFDVISLSL-----------VLNFVPDPKQRGEMLRR--AHK-FLKPPGL 139 (219)
T ss_pred CCCCCCcccceeEEEEEE-----------EEeeCCCHHHHHHHHHH--HHH-HhCCCCc
Confidence 8765 699999988 45555555555556555 223 5677776
No 259
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=96.25 E-value=0.02 Score=53.02 Aligned_cols=81 Identities=26% Similarity=0.421 Sum_probs=52.4
Q ss_pred HHHHHHcCCC-CCCEEEEEcCcccHHHHHHHHcC-CeEEEEeCCHHHHHHHHHHhhcCCCCCCeEEE-EccccCCCCC--
Q 018261 46 ESIVQKAGIK-STDVILEIGPGTGNLTKKLLEAG-KMVIAVELDSRMVLELQRRFQSTPYSNRLKVI-QGDVLKTDLP-- 120 (359)
Q Consensus 46 ~~iv~~~~~~-~~~~VLDIGcGtG~lt~~La~~~-~~V~avDid~~~i~~a~~~~~~~~~~~~v~~i-~~D~~~~~l~-- 120 (359)
..+++...+. ++.++||||+-||.+|..++++| .+|+|||..-..+.. .++..+ ++..+ ..|+..+...
T Consensus 68 ~~ale~F~l~~k~kv~LDiGsSTGGFTd~lLq~gAk~VyavDVG~~Ql~~---kLR~d~---rV~~~E~tN~r~l~~~~~ 141 (245)
T COG1189 68 EKALEEFELDVKGKVVLDIGSSTGGFTDVLLQRGAKHVYAVDVGYGQLHW---KLRNDP---RVIVLERTNVRYLTPEDF 141 (245)
T ss_pred HHHHHhcCcCCCCCEEEEecCCCccHHHHHHHcCCcEEEEEEccCCccCH---hHhcCC---cEEEEecCChhhCCHHHc
Confidence 3445555553 67899999999999999999994 789999987643322 232222 44433 3344443322
Q ss_pred --CCcccccccccc
Q 018261 121 --YFDICVANIPYQ 132 (359)
Q Consensus 121 --~fD~VvsNlPy~ 132 (359)
..|++++...|-
T Consensus 142 ~~~~d~~v~DvSFI 155 (245)
T COG1189 142 TEKPDLIVIDVSFI 155 (245)
T ss_pred ccCCCeEEEEeehh
Confidence 457888877653
No 260
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=96.12 E-value=0.0087 Score=60.79 Aligned_cols=79 Identities=16% Similarity=0.259 Sum_probs=46.8
Q ss_pred HHHHHHHHHHcCC--CCC--CEEEEEcCcccHHHHHHHHcCCeEEEE---eCCHHHHHHHHHHhhcCCCCCCeEEEEccc
Q 018261 42 PLLVESIVQKAGI--KST--DVILEIGPGTGNLTKKLLEAGKMVIAV---ELDSRMVLELQRRFQSTPYSNRLKVIQGDV 114 (359)
Q Consensus 42 ~~v~~~iv~~~~~--~~~--~~VLDIGcGtG~lt~~La~~~~~V~av---Did~~~i~~a~~~~~~~~~~~~v~~i~~D~ 114 (359)
...++.|.+.+.. ..+ .++||||||+|.++..|++++..++.+ |..+..++.|-++ .+-.+.+-+
T Consensus 99 ~~Yid~i~~~~~~~~~~g~iR~~LDvGcG~aSF~a~l~~r~V~t~s~a~~d~~~~qvqfaleR--------Gvpa~~~~~ 170 (506)
T PF03141_consen 99 DHYIDQIAEMIPLIKWGGGIRTALDVGCGVASFGAYLLERNVTTMSFAPNDEHEAQVQFALER--------GVPAMIGVL 170 (506)
T ss_pred HHHHHHHHHHhhccccCCceEEEEeccceeehhHHHHhhCCceEEEcccccCCchhhhhhhhc--------Ccchhhhhh
Confidence 4566667666654 222 368999999999999999886444443 3333445555443 122222222
Q ss_pred --cCCCCC--CCcccccc
Q 018261 115 --LKTDLP--YFDICVAN 128 (359)
Q Consensus 115 --~~~~l~--~fD~VvsN 128 (359)
..++++ .||+|-|.
T Consensus 171 ~s~rLPfp~~~fDmvHcs 188 (506)
T PF03141_consen 171 GSQRLPFPSNAFDMVHCS 188 (506)
T ss_pred ccccccCCccchhhhhcc
Confidence 234554 68987664
No 261
>KOG2912 consensus Predicted DNA methylase [Function unknown]
Probab=96.09 E-value=0.0098 Score=57.09 Aligned_cols=92 Identities=18% Similarity=0.303 Sum_probs=62.8
Q ss_pred HHHHHHHHHcCCCCCCE--EEEEcCcccHHHHHHHHc--CCeEEEEeCCHHHHHHHHHHhhcCCCCCCeEEEEccccCC-
Q 018261 43 LLVESIVQKAGIKSTDV--ILEIGPGTGNLTKKLLEA--GKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKT- 117 (359)
Q Consensus 43 ~v~~~iv~~~~~~~~~~--VLDIGcGtG~lt~~La~~--~~~V~avDid~~~i~~a~~~~~~~~~~~~v~~i~~D~~~~- 117 (359)
++++.++..-+..++.. =+|||+|.-++-..+-.. +...+|+|+|...++.|.+++..+++...+.+++....+.
T Consensus 87 hwI~DLLss~q~~k~~i~~GiDIgtgasci~~llg~rq~n~~f~~teidd~s~~~a~snV~qn~lss~ikvV~~~~~ktl 166 (419)
T KOG2912|consen 87 HWIEDLLSSQQSDKSTIRRGIDIGTGASCIYPLLGARQNNWYFLATEIDDMSFNYAKSNVEQNNLSSLIKVVKVEPQKTL 166 (419)
T ss_pred HHHHHHhhcccCCCcceeeeeeccCchhhhHHhhhchhccceeeeeeccccccchhhccccccccccceeeEEecchhhc
Confidence 34455554443333323 379998887765544333 5788999999999999999999888777777777643221
Q ss_pred -------CCC-CCcccccccccccc
Q 018261 118 -------DLP-YFDICVANIPYQIS 134 (359)
Q Consensus 118 -------~l~-~fD~VvsNlPy~i~ 134 (359)
... .||.|.||+||.-.
T Consensus 167 l~d~~~~~~e~~ydFcMcNPPFfe~ 191 (419)
T KOG2912|consen 167 LMDALKEESEIIYDFCMCNPPFFEN 191 (419)
T ss_pred chhhhccCccceeeEEecCCchhhc
Confidence 111 48999999998744
No 262
>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2.1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....
Probab=96.07 E-value=0.011 Score=56.55 Aligned_cols=69 Identities=32% Similarity=0.491 Sum_probs=54.5
Q ss_pred EEEEEcCcccHHHHHHHHcC-CeEEEEeCCHHHHHHHHHHhhcCCCCCCeEEEEccccCCC---CC-CCccccccccccc
Q 018261 59 VILEIGPGTGNLTKKLLEAG-KMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTD---LP-YFDICVANIPYQI 133 (359)
Q Consensus 59 ~VLDIGcGtG~lt~~La~~~-~~V~avDid~~~i~~a~~~~~~~~~~~~v~~i~~D~~~~~---l~-~fD~VvsNlPy~i 133 (359)
+++|+-||.|.++.-|.+.| .-|.|+|+|+.++...+.|+. .+..+|+.+++ ++ .+|++++.+|.+-
T Consensus 2 ~~~dlFsG~Gg~~~g~~~ag~~~~~a~e~~~~a~~~y~~N~~--------~~~~~Di~~~~~~~l~~~~D~l~ggpPCQ~ 73 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQAGFEVVWAVEIDPDACETYKANFP--------EVICGDITEIDPSDLPKDVDLLIGGPPCQG 73 (335)
T ss_dssp EEEEET-TTTHHHHHHHHTTEEEEEEEESSHHHHHHHHHHHT--------EEEESHGGGCHHHHHHHT-SEEEEE---TT
T ss_pred cEEEEccCccHHHHHHHhcCcEEEEEeecCHHHHHhhhhccc--------ccccccccccccccccccceEEEeccCCce
Confidence 68999999999999999888 468999999999999988873 68899999876 45 5999999999774
Q ss_pred ch
Q 018261 134 SS 135 (359)
Q Consensus 134 ~s 135 (359)
-|
T Consensus 74 fS 75 (335)
T PF00145_consen 74 FS 75 (335)
T ss_dssp TS
T ss_pred Ee
Confidence 43
No 263
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=96.06 E-value=0.0094 Score=58.26 Aligned_cols=76 Identities=22% Similarity=0.407 Sum_probs=59.8
Q ss_pred CCCCEEEEEcCcccHHHHHHHHc--CCeEEEEeCCHHHHHHHHHHh--h---cCC-CCCCeEEEEccccCCC---CCCCc
Q 018261 55 KSTDVILEIGPGTGNLTKKLLEA--GKMVIAVELDSRMVLELQRRF--Q---STP-YSNRLKVIQGDVLKTD---LPYFD 123 (359)
Q Consensus 55 ~~~~~VLDIGcGtG~lt~~La~~--~~~V~avDid~~~i~~a~~~~--~---~~~-~~~~v~~i~~D~~~~~---l~~fD 123 (359)
....+||=+|-|.|.-.++|.+. ..+|+-||+||+|++.++++. . ... .+.+++++..|+.++- -..||
T Consensus 288 ~~a~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~fD 367 (508)
T COG4262 288 RGARSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAADMFD 367 (508)
T ss_pred cccceEEEEcCCchHHHHHHHhCCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhccccc
Confidence 34568999999999999999987 379999999999999998432 1 111 2458999999998643 23799
Q ss_pred ccccccc
Q 018261 124 ICVANIP 130 (359)
Q Consensus 124 ~VvsNlP 130 (359)
.||..+|
T Consensus 368 ~vIVDl~ 374 (508)
T COG4262 368 VVIVDLP 374 (508)
T ss_pred EEEEeCC
Confidence 9998886
No 264
>PRK13699 putative methylase; Provisional
Probab=96.00 E-value=0.028 Score=52.04 Aligned_cols=60 Identities=18% Similarity=0.288 Sum_probs=52.0
Q ss_pred cCHHHHHHHHHHcCCCCCCEEEEEcCcccHHHHHHHHcCCeEEEEeCCHHHHHHHHHHhhc
Q 018261 40 KNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEAGKMVIAVELDSRMVLELQRRFQS 100 (359)
Q Consensus 40 ~d~~v~~~iv~~~~~~~~~~VLDIGcGtG~lt~~La~~~~~V~avDid~~~i~~a~~~~~~ 100 (359)
.+..+++.++.... .+++.|||.-||+|....+..+.+.+.+|+|+++..++.+.+++..
T Consensus 148 kP~~l~~~~i~~~s-~~g~~vlDpf~Gsgtt~~aa~~~~r~~~g~e~~~~y~~~~~~r~~~ 207 (227)
T PRK13699 148 KPVTSLQPLIESFT-HPNAIVLDPFAGSGSTCVAALQSGRRYIGIELLEQYHRAGQQRLAA 207 (227)
T ss_pred CcHHHHHHHHHHhC-CCCCEEEeCCCCCCHHHHHHHHcCCCEEEEecCHHHHHHHHHHHHH
Confidence 45678888887664 4789999999999998888888899999999999999999988754
No 265
>TIGR00497 hsdM type I restriction system adenine methylase (hsdM). Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)).
Probab=95.91 E-value=0.023 Score=58.73 Aligned_cols=105 Identities=20% Similarity=0.274 Sum_probs=72.8
Q ss_pred cccccCCCcccccCHHHHHHHHHHcCCC--CCCEEEEEcCcccHHHHHHHHc---C---CeEEEEeCCHHHHHHHHHHhh
Q 018261 28 ISFHKSKGQHILKNPLLVESIVQKAGIK--STDVILEIGPGTGNLTKKLLEA---G---KMVIAVELDSRMVLELQRRFQ 99 (359)
Q Consensus 28 ~~~~k~~GQ~fl~d~~v~~~iv~~~~~~--~~~~VLDIGcGtG~lt~~La~~---~---~~V~avDid~~~i~~a~~~~~ 99 (359)
-.+.+.-|+. .+...+++.+++.+... ++..|.|..||+|.+.....+. + ..+++-|..+.|..+++.++.
T Consensus 188 ~e~~t~~g~~-~Tp~~Iv~l~~~~~~~~~dp~~~~~Dp~~Gsg~~L~~~~~~~~~~qe~~~~~gqe~~~~~~~~a~mnm~ 266 (501)
T TIGR00497 188 QNAGKSGGEF-FTPQDISELLARIAIGKKDTVDDVYDMACGSGSLLLQVIKVLGEKTSLVSYYGQEINHTTYNLCRMNMI 266 (501)
T ss_pred HhcCCcCcee-eCcHHHHHHHHHHhccCCCCCCcccccccchHHHHHHHHHHhcccccceeEEEEeCchHHHHHHHHHHH
Confidence 3444556654 47788999888877643 5578999999999987654432 1 468999999999999998864
Q ss_pred cCCCC-CCeEEEEccccCC-CC---CCCccccccccccc
Q 018261 100 STPYS-NRLKVIQGDVLKT-DL---PYFDICVANIPYQI 133 (359)
Q Consensus 100 ~~~~~-~~v~~i~~D~~~~-~l---~~fD~VvsNlPy~i 133 (359)
-++.. +...+.++|-+.. +. ..||.|++|+||.-
T Consensus 267 l~~~~~~t~~~~~~dtl~~~d~~~~~~~D~v~~NpPf~~ 305 (501)
T TIGR00497 267 LHNIDYANFNIINADTLTTKEWENENGFEVVVSNPPYSI 305 (501)
T ss_pred HcCCCccccCcccCCcCCCccccccccCCEEeecCCccc
Confidence 43321 1344445565442 21 25899999999963
No 266
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=95.64 E-value=0.016 Score=57.44 Aligned_cols=105 Identities=15% Similarity=0.227 Sum_probs=74.9
Q ss_pred CCCCCCEEEEEcCcccHHHHHHHHc-CCeEEEEeCCHHHHHHHHHHhhcCCCCCCeEEEEccccCCCCC--CCccccccc
Q 018261 53 GIKSTDVILEIGPGTGNLTKKLLEA-GKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTDLP--YFDICVANI 129 (359)
Q Consensus 53 ~~~~~~~VLDIGcGtG~lt~~La~~-~~~V~avDid~~~i~~a~~~~~~~~~~~~v~~i~~D~~~~~l~--~fD~VvsNl 129 (359)
...++..++|+|||.|..+..++.. ...+++++.++.-+..+........+..+..++.+|+.+.+++ .||.+-+.
T Consensus 107 ~~~~~~~~~~~~~g~~~~~~~i~~f~~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~fedn~fd~v~~l- 185 (364)
T KOG1269|consen 107 SCFPGSKVLDVGTGVGGPSRYIAVFKKAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKMPFEDNTFDGVRFL- 185 (364)
T ss_pred cCcccccccccCcCcCchhHHHHHhccCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcCCCCccccCcEEEE-
Confidence 3456678999999999999999876 5899999999988888777665554555666788899887665 68866542
Q ss_pred ccccchHHHHHHHhcCchhhHHHHHHHHHHHHHHhccCCCeeEEe
Q 018261 130 PYQISSPLTFKLLFHQPAFRCAIIMFQKEFAMRLVAQPGDKLYCR 174 (359)
Q Consensus 130 Py~i~s~ii~~ll~~~~~~~~~~~~~qkE~a~Rlv~kpGg~~y~~ 174 (359)
....|.+.....+ +|+.+ +++|||.....
T Consensus 186 ----------d~~~~~~~~~~~y----~Ei~r--v~kpGG~~i~~ 214 (364)
T KOG1269|consen 186 ----------EVVCHAPDLEKVY----AEIYR--VLKPGGLFIVK 214 (364)
T ss_pred ----------eecccCCcHHHHH----HHHhc--ccCCCceEEeH
Confidence 1233444443333 56654 79999987644
No 267
>PHA01634 hypothetical protein
Probab=95.58 E-value=0.028 Score=47.23 Aligned_cols=46 Identities=15% Similarity=0.192 Sum_probs=41.0
Q ss_pred CCCEEEEEcCcccHHHHHHHHcC-CeEEEEeCCHHHHHHHHHHhhcC
Q 018261 56 STDVILEIGPGTGNLTKKLLEAG-KMVIAVELDSRMVLELQRRFQST 101 (359)
Q Consensus 56 ~~~~VLDIGcGtG~lt~~La~~~-~~V~avDid~~~i~~a~~~~~~~ 101 (359)
.+.+|+|||.+.|.-++.++-+| .+|+++|.++.+.+..+++++.+
T Consensus 28 k~KtV~dIGA~iGdSaiYF~l~GAK~Vva~E~~~kl~k~~een~k~n 74 (156)
T PHA01634 28 YQRTIQIVGADCGSSALYFLLRGASFVVQYEKEEKLRKKWEEVCAYF 74 (156)
T ss_pred cCCEEEEecCCccchhhHHhhcCccEEEEeccCHHHHHHHHHHhhhh
Confidence 57899999999999999888775 68999999999999999987654
No 268
>KOG2078 consensus tRNA modification enzyme [RNA processing and modification]
Probab=95.48 E-value=0.015 Score=57.95 Aligned_cols=90 Identities=17% Similarity=0.209 Sum_probs=70.5
Q ss_pred ccccccccCCCcccccCHHHH--HHHHHHcCCCCCCEEEEEcCcccHHHHHHHHcCCeEEEEeCCHHHHHHHHHHhhcCC
Q 018261 25 AGGISFHKSKGQHILKNPLLV--ESIVQKAGIKSTDVILEIGPGTGNLTKKLLEAGKMVIAVELDSRMVLELQRRFQSTP 102 (359)
Q Consensus 25 ~~~~~~~k~~GQ~fl~d~~v~--~~iv~~~~~~~~~~VLDIGcGtG~lt~~La~~~~~V~avDid~~~i~~a~~~~~~~~ 102 (359)
..+.+|+-.+|.-+..++... +++.. -..++..|-|+.||.|-+...+++.+++|+|-|.+++++++++.++..+.
T Consensus 218 e~~~~Fk~DfskVYWnsRL~~Eherlsg--~fk~gevv~D~FaGvGPfa~Pa~kK~crV~aNDLNpesik~Lk~ni~lNk 295 (495)
T KOG2078|consen 218 EGGERFKFDFSKVYWNSRLSHEHERLSG--LFKPGEVVCDVFAGVGPFALPAAKKGCRVYANDLNPESIKWLKANIKLNK 295 (495)
T ss_pred cCCeeEEEecceEEeeccchhHHHHHhh--ccCCcchhhhhhcCcCccccchhhcCcEEEecCCCHHHHHHHHHhccccc
Confidence 457778888887775543222 22222 23578899999999999999999999999999999999999999998776
Q ss_pred CCCC-eEEEEccccC
Q 018261 103 YSNR-LKVIQGDVLK 116 (359)
Q Consensus 103 ~~~~-v~~i~~D~~~ 116 (359)
++.. +++++.|+-.
T Consensus 296 v~~~~iei~Nmda~~ 310 (495)
T KOG2078|consen 296 VDPSAIEIFNMDAKD 310 (495)
T ss_pred cchhheeeecccHHH
Confidence 6554 8888888754
No 269
>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.
Probab=95.43 E-value=0.025 Score=51.68 Aligned_cols=57 Identities=21% Similarity=0.193 Sum_probs=39.4
Q ss_pred HHHHHHHHHc-CC---CCCCEEEEEcCcccHHHHHHHHc----CCeEEEEeCCHHHHHHHHHHhh
Q 018261 43 LLVESIVQKA-GI---KSTDVILEIGPGTGNLTKKLLEA----GKMVIAVELDSRMVLELQRRFQ 99 (359)
Q Consensus 43 ~v~~~iv~~~-~~---~~~~~VLDIGcGtG~lt~~La~~----~~~V~avDid~~~i~~a~~~~~ 99 (359)
+++..|++.+ .. ..+-++.|.+||.|++...+.=. -..|+|-|+|+.+++.|++|+.
T Consensus 34 RLAsEi~qR~l~~l~~~~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~ 98 (246)
T PF11599_consen 34 RLASEIFQRALHYLEGKGPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLS 98 (246)
T ss_dssp HHHHHHHHHHHCTSSS-S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcCCCCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhh
Confidence 5555565543 32 34568999999999987655322 2689999999999999998875
No 270
>TIGR00675 dcm DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=95.36 E-value=0.026 Score=54.78 Aligned_cols=69 Identities=30% Similarity=0.440 Sum_probs=55.4
Q ss_pred EEEEcCcccHHHHHHHHcCCe-EEEEeCCHHHHHHHHHHhhcCCCCCCeEEEEccccCCC---CCCCcccccccccccch
Q 018261 60 ILEIGPGTGNLTKKLLEAGKM-VIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTD---LPYFDICVANIPYQISS 135 (359)
Q Consensus 60 VLDIGcGtG~lt~~La~~~~~-V~avDid~~~i~~a~~~~~~~~~~~~v~~i~~D~~~~~---l~~fD~VvsNlPy~i~s 135 (359)
|+|+-||.|.++.-|.+.|.+ |.++|+++.+++..+.|+.. .++++|+.++. ++.+|++++.+|.+--|
T Consensus 1 vidLF~G~GG~~~Gl~~aG~~~~~a~e~~~~a~~ty~~N~~~-------~~~~~Di~~~~~~~~~~~dvl~gg~PCq~fS 73 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQAGFKCVFASEIDKYAQKTYEANFGN-------KVPFGDITKISPSDIPDFDILLGGFPCQPFS 73 (315)
T ss_pred CEEEecCccHHHHHHHHcCCeEEEEEeCCHHHHHHHHHhCCC-------CCCccChhhhhhhhCCCcCEEEecCCCcccc
Confidence 689999999999999888866 56899999999988887632 45678888765 44689999999976443
No 271
>PRK10458 DNA cytosine methylase; Provisional
Probab=95.10 E-value=0.055 Score=55.35 Aligned_cols=76 Identities=18% Similarity=0.303 Sum_probs=57.4
Q ss_pred CCEEEEEcCcccHHHHHHHHcCC-eEEEEeCCHHHHHHHHHHhhcCCCCCCeEEEEccccCCC-----------------
Q 018261 57 TDVILEIGPGTGNLTKKLLEAGK-MVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTD----------------- 118 (359)
Q Consensus 57 ~~~VLDIGcGtG~lt~~La~~~~-~V~avDid~~~i~~a~~~~~~~~~~~~v~~i~~D~~~~~----------------- 118 (359)
.-+++|+-||.|.++.-+-..|. -|.++|+++.+.+..+.|+...+ ...++++|+.+++
T Consensus 88 ~~~~iDLFsGiGGl~lGfe~aG~~~v~a~Eid~~A~~TY~~N~~~~p---~~~~~~~DI~~i~~~~~~~~~~~~~~~~~~ 164 (467)
T PRK10458 88 AFRFIDLFAGIGGIRRGFEAIGGQCVFTSEWNKHAVRTYKANWYCDP---ATHRFNEDIRDITLSHKEGVSDEEAAEHIR 164 (467)
T ss_pred CceEEEeCcCccHHHHHHHHcCCEEEEEEechHHHHHHHHHHcCCCC---ccceeccChhhCccccccccchhhhhhhhh
Confidence 34899999999999999987775 56899999999888888763222 3445667776654
Q ss_pred --CCCCcccccccccccch
Q 018261 119 --LPYFDICVANIPYQISS 135 (359)
Q Consensus 119 --l~~fD~VvsNlPy~i~s 135 (359)
++.+|++++.+|.+--|
T Consensus 165 ~~~p~~DvL~gGpPCQ~FS 183 (467)
T PRK10458 165 QHIPDHDVLLAGFPCQPFS 183 (467)
T ss_pred ccCCCCCEEEEcCCCCccc
Confidence 23579999999987544
No 272
>PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre. This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ).
Probab=95.00 E-value=0.13 Score=45.25 Aligned_cols=135 Identities=18% Similarity=0.163 Sum_probs=78.4
Q ss_pred CCcccccCHHHHHHHHHHcCC--CCCCEEEEEcCcccHHHHHH-HHcCCeEEEEeCCHHHHHHHHHHhhcCCCCCCeEEE
Q 018261 34 KGQHILKNPLLVESIVQKAGI--KSTDVILEIGPGTGNLTKKL-LEAGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVI 110 (359)
Q Consensus 34 ~GQ~fl~d~~v~~~iv~~~~~--~~~~~VLDIGcGtG~lt~~L-a~~~~~V~avDid~~~i~~a~~~~~~~~~~~~v~~i 110 (359)
+.|.|. +...++.+++.+.- .+..+|+=|||=+-.....- .....+++..|+|.+..... ++ .++
T Consensus 2 lsQfwY-s~~T~~~l~~~l~~~~~~~~~iaclstPsl~~~l~~~~~~~~~~~Lle~D~RF~~~~----------~~-~F~ 69 (162)
T PF10237_consen 2 LSQFWY-SDETAEFLARELLDGALDDTRIACLSTPSLYEALKKESKPRIQSFLLEYDRRFEQFG----------GD-EFV 69 (162)
T ss_pred cccccc-CHHHHHHHHHHHHHhcCCCCEEEEEeCcHHHHHHHhhcCCCccEEEEeecchHHhcC----------Cc-ceE
Confidence 456554 45566666655422 45679999998775544333 11357899999999874321 12 344
Q ss_pred EccccCC-CC-----CCCcccccccccccchHHHHHHHhcCchhhHHHHHHHHHHHHHHhccCCCeeEEeecchhhhHHh
Q 018261 111 QGDVLKT-DL-----PYFDICVANIPYQISSPLTFKLLFHQPAFRCAIIMFQKEFAMRLVAQPGDKLYCRLSVNTQLHAR 184 (359)
Q Consensus 111 ~~D~~~~-~l-----~~fD~VvsNlPy~i~s~ii~~ll~~~~~~~~~~~~~qkE~a~Rlv~kpGg~~y~~lsv~~q~~~~ 184 (359)
.-|..+. .+ ..||+||+.+|| ++.+...+... +.|.+++++++++...+.. ....
T Consensus 70 fyD~~~p~~~~~~l~~~~d~vv~DPPF-l~~ec~~k~a~----------------ti~~L~k~~~kii~~Tg~~--~~~~ 130 (162)
T PF10237_consen 70 FYDYNEPEELPEELKGKFDVVVIDPPF-LSEECLTKTAE----------------TIRLLLKPGGKIILCTGEE--MEEL 130 (162)
T ss_pred ECCCCChhhhhhhcCCCceEEEECCCC-CCHHHHHHHHH----------------HHHHHhCccceEEEecHHH--HHHH
Confidence 4454431 11 279999999999 66655544432 2366788888775433221 2223
Q ss_pred hhhhhccCCCCccCC
Q 018261 185 VSHLLKVGKNNFRPP 199 (359)
Q Consensus 185 v~~l~~v~~~~F~P~ 199 (359)
+..++.+.+..|.|.
T Consensus 131 ~~~ll~~~~~~f~p~ 145 (162)
T PF10237_consen 131 IKKLLGLRMCDFQPE 145 (162)
T ss_pred HHHHhCeeEEeEEec
Confidence 344445555566553
No 273
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=94.89 E-value=0.041 Score=52.19 Aligned_cols=102 Identities=20% Similarity=0.238 Sum_probs=64.2
Q ss_pred HHHHHHHHcCCCCCCEEEEEcCcccHHHHHHHHcCCeEEEEeCCHHHHHHHHHHhhcCCCCCCe-EEEEccccCCCCC--
Q 018261 44 LVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEAGKMVIAVELDSRMVLELQRRFQSTPYSNRL-KVIQGDVLKTDLP-- 120 (359)
Q Consensus 44 v~~~iv~~~~~~~~~~VLDIGcGtG~lt~~La~~~~~V~avDid~~~i~~a~~~~~~~~~~~~v-~~i~~D~~~~~l~-- 120 (359)
.+...+.... .+..++|+|||.|-.+..- -...++++|++..++..++.. +. .+..+|+++++..
T Consensus 35 ~v~qfl~~~~--~gsv~~d~gCGngky~~~~--p~~~~ig~D~c~~l~~~ak~~--------~~~~~~~ad~l~~p~~~~ 102 (293)
T KOG1331|consen 35 MVRQFLDSQP--TGSVGLDVGCGNGKYLGVN--PLCLIIGCDLCTGLLGGAKRS--------GGDNVCRADALKLPFREE 102 (293)
T ss_pred HHHHHHhccC--CcceeeecccCCcccCcCC--CcceeeecchhhhhccccccC--------CCceeehhhhhcCCCCCC
Confidence 3444444443 4778999999999754221 134689999999998888764 23 5788999998765
Q ss_pred CCcccccccccccchHHHHHHHhcCchhhHHHHHHHHHHHHHHhccCCCee
Q 018261 121 YFDICVANIPYQISSPLTFKLLFHQPAFRCAIIMFQKEFAMRLVAQPGDKL 171 (359)
Q Consensus 121 ~fD~VvsNlPy~i~s~ii~~ll~~~~~~~~~~~~~qkE~a~Rlv~kpGg~~ 171 (359)
+||.+++..- .+.+........ +.+|..+ +++|||..
T Consensus 103 s~d~~lsiav--------ihhlsT~~RR~~----~l~e~~r--~lrpgg~~ 139 (293)
T KOG1331|consen 103 SFDAALSIAV--------IHHLSTRERRER----ALEELLR--VLRPGGNA 139 (293)
T ss_pred ccccchhhhh--------hhhhhhHHHHHH----HHHHHHH--HhcCCCce
Confidence 6887766331 111111111111 2266654 78999985
No 274
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=94.76 E-value=0.11 Score=48.60 Aligned_cols=44 Identities=25% Similarity=0.354 Sum_probs=35.2
Q ss_pred CCEEEEEcCcccHHHHHHHHc----------CCeEEEEeCCHHHHHHHHHHhhc
Q 018261 57 TDVILEIGPGTGNLTKKLLEA----------GKMVIAVELDSRMVLELQRRFQS 100 (359)
Q Consensus 57 ~~~VLDIGcGtG~lt~~La~~----------~~~V~avDid~~~i~~a~~~~~~ 100 (359)
.-+|+|+|+|+|.++..+++. ..+++-||+||.+.+.-++++..
T Consensus 19 ~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~~ 72 (252)
T PF02636_consen 19 PLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLSE 72 (252)
T ss_dssp -EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCCC
T ss_pred CcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhhh
Confidence 469999999999999988764 14799999999999888888765
No 275
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=94.64 E-value=0.042 Score=49.49 Aligned_cols=113 Identities=17% Similarity=0.200 Sum_probs=64.6
Q ss_pred HHcCCCCCCEEEEEcCcccHHHHHHHHc-C--CeEEEEeCCHHHHHHHHH----H-hhcCCCCCCeEEEEccccCCCCC-
Q 018261 50 QKAGIKSTDVILEIGPGTGNLTKKLLEA-G--KMVIAVELDSRMVLELQR----R-FQSTPYSNRLKVIQGDVLKTDLP- 120 (359)
Q Consensus 50 ~~~~~~~~~~VLDIGcGtG~lt~~La~~-~--~~V~avDid~~~i~~a~~----~-~~~~~~~~~v~~i~~D~~~~~l~- 120 (359)
..+++.++.+|+|+=+|.|++|+.++.. + ..|+++=.++......++ + +.......|++.+-.+...+..+
T Consensus 42 ~FaGlkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~~aN~e~~~~~~~A~~~pq 121 (238)
T COG4798 42 AFAGLKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREPVYANVEVIGKPLVALGAPQ 121 (238)
T ss_pred EEeccCCCCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhhhhhhhhhhCCcccccCCCC
Confidence 3567889999999999999999999876 2 478776554431111111 1 01111122666666666655533
Q ss_pred CCcccccccccccchHHHHHHHhcCchhhHHHHHHHHHHHHHHhccCCCeeE
Q 018261 121 YFDICVANIPYQISSPLTFKLLFHQPAFRCAIIMFQKEFAMRLVAQPGDKLY 172 (359)
Q Consensus 121 ~fD~VvsNlPy~i~s~ii~~ll~~~~~~~~~~~~~qkE~a~Rlv~kpGg~~y 172 (359)
..|+++.+.-|+..+.. .+. ... .--+..++.+ .+||||.+.
T Consensus 122 ~~d~~~~~~~yhdmh~k---~i~----~~~-A~~vna~vf~--~LKPGGv~~ 163 (238)
T COG4798 122 KLDLVPTAQNYHDMHNK---NIH----PAT-AAKVNAAVFK--ALKPGGVYL 163 (238)
T ss_pred cccccccchhhhhhhcc---ccC----cch-HHHHHHHHHH--hcCCCcEEE
Confidence 57788877776643311 111 111 1112244444 689999754
No 276
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=94.54 E-value=0.32 Score=44.16 Aligned_cols=84 Identities=23% Similarity=0.338 Sum_probs=63.4
Q ss_pred HHHHHHHHH---cCCCCCCEEEEEcCcccHHHHHHHHc-C-CeEEEEeCCHHHHHHHHHHhhcCCCCCCeEEEEccccCC
Q 018261 43 LLVESIVQK---AGIKSTDVILEIGPGTGNLTKKLLEA-G-KMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKT 117 (359)
Q Consensus 43 ~v~~~iv~~---~~~~~~~~VLDIGcGtG~lt~~La~~-~-~~V~avDid~~~i~~a~~~~~~~~~~~~v~~i~~D~~~~ 117 (359)
.++..|+.- +.+.++++||=+|+-+|+-..+.+.- + ..|+|||++++....+-..+...+ |+--+.+|+...
T Consensus 60 KLaAaIl~Gl~~~pi~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~R~---Ni~PIL~DA~~P 136 (231)
T COG1889 60 KLAAAILKGLKNFPIKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEKRP---NIIPILEDARKP 136 (231)
T ss_pred HHHHHHHcCcccCCcCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHhCC---CceeeecccCCc
Confidence 455555543 45788999999999999988888876 3 689999999998877766665544 888899999763
Q ss_pred C-----CCCCccccccc
Q 018261 118 D-----LPYFDICVANI 129 (359)
Q Consensus 118 ~-----l~~fD~VvsNl 129 (359)
. .+..|+|+...
T Consensus 137 ~~Y~~~Ve~VDviy~DV 153 (231)
T COG1889 137 EKYRHLVEKVDVIYQDV 153 (231)
T ss_pred HHhhhhcccccEEEEec
Confidence 2 23578887754
No 277
>COG1565 Uncharacterized conserved protein [Function unknown]
Probab=94.50 E-value=0.11 Score=51.03 Aligned_cols=65 Identities=22% Similarity=0.376 Sum_probs=47.4
Q ss_pred ccccCHHHH--------HHHH---HHcCCCCCCEEEEEcCcccHHHHHHHHc----------CCeEEEEeCCHHHHHHHH
Q 018261 37 HILKNPLLV--------ESIV---QKAGIKSTDVILEIGPGTGNLTKKLLEA----------GKMVIAVELDSRMVLELQ 95 (359)
Q Consensus 37 ~fl~d~~v~--------~~iv---~~~~~~~~~~VLDIGcGtG~lt~~La~~----------~~~V~avDid~~~i~~a~ 95 (359)
.|.+.|++- ..++ +.......-.++|||+|+|.+..-+++. ..++.-||+|+++.+.=+
T Consensus 47 DFiTApels~lFGella~~~~~~wq~~g~p~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk 126 (370)
T COG1565 47 DFITAPELSQLFGELLAEQFLQLWQELGRPAPLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQK 126 (370)
T ss_pred CeeechhHHHHHHHHHHHHHHHHHHHhcCCCCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHHH
Confidence 477777543 2233 3334444568999999999999877754 368999999999988888
Q ss_pred HHhhcC
Q 018261 96 RRFQST 101 (359)
Q Consensus 96 ~~~~~~ 101 (359)
++++..
T Consensus 127 ~~L~~~ 132 (370)
T COG1565 127 ETLKAT 132 (370)
T ss_pred HHHhcc
Confidence 877654
No 278
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=94.10 E-value=0.13 Score=48.68 Aligned_cols=76 Identities=16% Similarity=0.249 Sum_probs=46.1
Q ss_pred CHHHHHHHHHHcCCC-CCCEEEEEcCcccH--HHHHHHHc---CCeEEEEeCCHHHHHHHHHHhhcCCCCCCeEEEEccc
Q 018261 41 NPLLVESIVQKAGIK-STDVILEIGPGTGN--LTKKLLEA---GKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDV 114 (359)
Q Consensus 41 d~~v~~~iv~~~~~~-~~~~VLDIGcGtG~--lt~~La~~---~~~V~avDid~~~i~~a~~~~~~~~~~~~v~~i~~D~ 114 (359)
++.++.+.++.+.-. .-...||||||.-. .+.+.++. .++|+-||.||-.+.+++..+...+- +...++++|+
T Consensus 52 nR~Fl~RaVr~la~~~GIrQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~-g~t~~v~aD~ 130 (267)
T PF04672_consen 52 NRAFLRRAVRYLAEEAGIRQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPR-GRTAYVQADL 130 (267)
T ss_dssp HHHHHHHHHHHHHCTT---EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TT-SEEEEEE--T
T ss_pred HHHHHHHHHHHHHHhcCcceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCC-ccEEEEeCCC
Confidence 344445555554333 23579999999652 55666654 58999999999999999999877651 1388999999
Q ss_pred cCC
Q 018261 115 LKT 117 (359)
Q Consensus 115 ~~~ 117 (359)
.+.
T Consensus 131 r~p 133 (267)
T PF04672_consen 131 RDP 133 (267)
T ss_dssp T-H
T ss_pred CCH
Confidence 863
No 279
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=94.04 E-value=0.058 Score=43.97 Aligned_cols=53 Identities=15% Similarity=0.234 Sum_probs=38.3
Q ss_pred ccccCHHHHHHHHHHcC----CCCCCEEEEEcCcccHHHHHHHHcCCeEEEEeCCHH
Q 018261 37 HILKNPLLVESIVQKAG----IKSTDVILEIGPGTGNLTKKLLEAGKMVIAVELDSR 89 (359)
Q Consensus 37 ~fl~d~~v~~~iv~~~~----~~~~~~VLDIGcGtG~lt~~La~~~~~V~avDid~~ 89 (359)
|.+.|-.++..++..-. ..+....+|||||.|.|.-.|...|.+=+|+|.-.+
T Consensus 35 ~VfEDlaIAAyLi~LW~~~~~~~~~~~FVDlGCGNGLLV~IL~~EGy~G~GiD~R~R 91 (112)
T PF07757_consen 35 HVFEDLAIAAYLIELWRDMYGEQKFQGFVDLGCGNGLLVYILNSEGYPGWGIDARRR 91 (112)
T ss_pred hHHHHHHHHHHHHHHHhcccCCCCCCceEEccCCchHHHHHHHhCCCCccccccccc
Confidence 34455566666665432 123457899999999999999999999999996543
No 280
>KOG1227 consensus Putative methyltransferase [General function prediction only]
Probab=93.91 E-value=0.021 Score=54.56 Aligned_cols=71 Identities=27% Similarity=0.340 Sum_probs=56.3
Q ss_pred CCCEEEEEcCcccHHHH-HHHHcC-CeEEEEeCCHHHHHHHHHHhhcCCCCCCeEEEEccccCCCCC-CCcccc
Q 018261 56 STDVILEIGPGTGNLTK-KLLEAG-KMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTDLP-YFDICV 126 (359)
Q Consensus 56 ~~~~VLDIGcGtG~lt~-~La~~~-~~V~avDid~~~i~~a~~~~~~~~~~~~v~~i~~D~~~~~l~-~fD~Vv 126 (359)
.+..|.|+=+|.|++|. .|...+ ..|+|+|++|..++.++.+++.+.+..+..++.+|-....+. ..|.|.
T Consensus 194 ~~eviVDLYAGIGYFTlpflV~agAk~V~A~EwNp~svEaLrR~~~~N~V~~r~~i~~gd~R~~~~~~~AdrVn 267 (351)
T KOG1227|consen 194 DGEVIVDLYAGIGYFTLPFLVTAGAKTVFACEWNPWSVEALRRNAEANNVMDRCRITEGDNRNPKPRLRADRVN 267 (351)
T ss_pred ccchhhhhhcccceEEeehhhccCccEEEEEecCHHHHHHHHHHHHhcchHHHHHhhhccccccCccccchhee
Confidence 34689999999999999 666664 789999999999999999998887766777888887654433 355543
No 281
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=93.86 E-value=0.12 Score=47.04 Aligned_cols=79 Identities=25% Similarity=0.398 Sum_probs=44.0
Q ss_pred CCcccccCHHHH---HHHHHHcCCCCCCEEEEEcCcccHHHHHHHHc------CCeEEEEeCCHHHHHHHHHHhhcCCCC
Q 018261 34 KGQHILKNPLLV---ESIVQKAGIKSTDVILEIGPGTGNLTKKLLEA------GKMVIAVELDSRMVLELQRRFQSTPYS 104 (359)
Q Consensus 34 ~GQ~fl~d~~v~---~~iv~~~~~~~~~~VLDIGcGtG~lt~~La~~------~~~V~avDid~~~i~~a~~~~~~~~~~ 104 (359)
+|..++..|.=+ +.++-.+ +++.|+|+|.-.|.-...+|.. ..+|++||++.+.... +....++..
T Consensus 10 ~G~pi~q~P~Dm~~~qeli~~~---kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~--~a~e~hp~~ 84 (206)
T PF04989_consen 10 LGRPIIQYPQDMVAYQELIWEL---KPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNR--KAIESHPMS 84 (206)
T ss_dssp TTEEESS-HHHHHHHHHHHHHH-----SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S---GGGG----
T ss_pred CCeehhcCHHHHHHHHHHHHHh---CCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhch--HHHhhcccc
Confidence 566666665433 4444444 5689999999999877666542 3799999998765332 333444555
Q ss_pred CCeEEEEccccCC
Q 018261 105 NRLKVIQGDVLKT 117 (359)
Q Consensus 105 ~~v~~i~~D~~~~ 117 (359)
.+++++.||..+.
T Consensus 85 ~rI~~i~Gds~d~ 97 (206)
T PF04989_consen 85 PRITFIQGDSIDP 97 (206)
T ss_dssp TTEEEEES-SSST
T ss_pred CceEEEECCCCCH
Confidence 6999999998764
No 282
>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]
Probab=93.82 E-value=0.27 Score=45.78 Aligned_cols=78 Identities=21% Similarity=0.287 Sum_probs=54.4
Q ss_pred HHcCCCCCCEEEEEcCcccHHHHHHHHc-C--CeEEEEeCCHHHHHHHHHHhhcCCCCCCeEEEEccccCCC-----CCC
Q 018261 50 QKAGIKSTDVILEIGPGTGNLTKKLLEA-G--KMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTD-----LPY 121 (359)
Q Consensus 50 ~~~~~~~~~~VLDIGcGtG~lt~~La~~-~--~~V~avDid~~~i~~a~~~~~~~~~~~~v~~i~~D~~~~~-----l~~ 121 (359)
+.+.+.++..||=+|+++|.-..+.+.. + .-|+|||.++..=..+-.-..... |+.-|..|+.... .+-
T Consensus 150 dnihikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkkRt---NiiPIiEDArhP~KYRmlVgm 226 (317)
T KOG1596|consen 150 DNIHIKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKKRT---NIIPIIEDARHPAKYRMLVGM 226 (317)
T ss_pred cceeecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhccC---CceeeeccCCCchheeeeeee
Confidence 3455789999999999999987777766 2 579999999765444433222222 7777888886522 224
Q ss_pred Ccccccccc
Q 018261 122 FDICVANIP 130 (359)
Q Consensus 122 fD~VvsNlP 130 (359)
.|+|++.++
T Consensus 227 VDvIFaDva 235 (317)
T KOG1596|consen 227 VDVIFADVA 235 (317)
T ss_pred EEEEeccCC
Confidence 688998775
No 283
>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=93.74 E-value=0.15 Score=49.84 Aligned_cols=72 Identities=28% Similarity=0.356 Sum_probs=57.4
Q ss_pred CEEEEEcCcccHHHHHHHHcCC-eEEEEeCCHHHHHHHHHHhhcCCCCCCeEEEEccccCCCCC-----CCccccccccc
Q 018261 58 DVILEIGPGTGNLTKKLLEAGK-MVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTDLP-----YFDICVANIPY 131 (359)
Q Consensus 58 ~~VLDIGcGtG~lt~~La~~~~-~V~avDid~~~i~~a~~~~~~~~~~~~v~~i~~D~~~~~l~-----~fD~VvsNlPy 131 (359)
-+++|+-||.|.+..-+...|. -+.++|+|+.+++..+.++.. ..++..|+.++... .+|++++.+|.
T Consensus 4 ~~~idLFsG~GG~~lGf~~agf~~~~a~Eid~~a~~ty~~n~~~------~~~~~~di~~~~~~~~~~~~~DvligGpPC 77 (328)
T COG0270 4 MKVIDLFAGIGGLSLGFEEAGFEIVFANEIDPPAVATYKANFPH------GDIILGDIKELDGEALRKSDVDVLIGGPPC 77 (328)
T ss_pred ceEEeeccCCchHHHHHHhcCCeEEEEEecCHHHHHHHHHhCCC------CceeechHhhcChhhccccCCCEEEeCCCC
Confidence 4799999999999999988884 578999999999999888752 34677787765421 57999999998
Q ss_pred ccch
Q 018261 132 QISS 135 (359)
Q Consensus 132 ~i~s 135 (359)
+-.|
T Consensus 78 Q~FS 81 (328)
T COG0270 78 QDFS 81 (328)
T ss_pred cchh
Confidence 7443
No 284
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=93.66 E-value=0.91 Score=41.74 Aligned_cols=82 Identities=12% Similarity=0.143 Sum_probs=58.0
Q ss_pred HHHHHHHHHcCCCCCCEEEEEcCcccHHHHHHHHcC-CeEEEEeCCHHHHHHHHHHhhcCCCCCCeEEEEccccCC----
Q 018261 43 LLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEAG-KMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKT---- 117 (359)
Q Consensus 43 ~v~~~iv~~~~~~~~~~VLDIGcGtG~lt~~La~~~-~~V~avDid~~~i~~a~~~~~~~~~~~~v~~i~~D~~~~---- 117 (359)
.+....++++. .++.+||+||-|.|.+...+.+.. .+=+-||..|..++..+..--.. ..||.++.+-.++.
T Consensus 89 piMha~A~ai~-tkggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp~V~krmr~~gw~e--k~nViil~g~WeDvl~~L 165 (271)
T KOG1709|consen 89 PIMHALAEAIS-TKGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHPDVLKRMRDWGWRE--KENVIILEGRWEDVLNTL 165 (271)
T ss_pred HHHHHHHHHHh-hCCceEEEeccchHHHHHHHhhcCCcceEEEecCHHHHHHHHhccccc--ccceEEEecchHhhhccc
Confidence 44455555554 688999999999999888887663 45577999999999888764322 24788888765542
Q ss_pred CCCCCccccc
Q 018261 118 DLPYFDICVA 127 (359)
Q Consensus 118 ~l~~fD~Vvs 127 (359)
+-..||-|+-
T Consensus 166 ~d~~FDGI~y 175 (271)
T KOG1709|consen 166 PDKHFDGIYY 175 (271)
T ss_pred cccCcceeEe
Confidence 2236887764
No 285
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=92.79 E-value=0.13 Score=48.51 Aligned_cols=104 Identities=19% Similarity=0.326 Sum_probs=57.5
Q ss_pred CCCEEEEEcCcccHHHHHHH--HcCCeEEEEeCCHHHHHHHHHHhhcCCC-------------C--------------CC
Q 018261 56 STDVILEIGPGTGNLTKKLL--EAGKMVIAVELDSRMVLELQRRFQSTPY-------------S--------------NR 106 (359)
Q Consensus 56 ~~~~VLDIGcGtG~lt~~La--~~~~~V~avDid~~~i~~a~~~~~~~~~-------------~--------------~~ 106 (359)
.+.++||||||+-.. ..|+ +...+|+..|..+.-.+.+++-++..+. . ..
T Consensus 56 ~g~~llDiGsGPtiy-~~lsa~~~f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~lR~~ 134 (256)
T PF01234_consen 56 KGETLLDIGSGPTIY-QLLSACEWFEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEKLRRA 134 (256)
T ss_dssp -EEEEEEES-TT--G-GGTTGGGTEEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHH-hhhhHHHhhcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHHHHHh
Confidence 567999999999433 2222 2246899999999988877766543210 0 11
Q ss_pred e-EEEEccccCCC-------CC-CCcccccccccccchHHHHHHHhcCchhhHHHHHHHHHHHHHHhccCCCeeEE
Q 018261 107 L-KVIQGDVLKTD-------LP-YFDICVANIPYQISSPLTFKLLFHQPAFRCAIIMFQKEFAMRLVAQPGDKLYC 173 (359)
Q Consensus 107 v-~~i~~D~~~~~-------l~-~fD~VvsNlPy~i~s~ii~~ll~~~~~~~~~~~~~qkE~a~Rlv~kpGg~~y~ 173 (359)
| .++.+|+.+.+ ++ .||+|++.+-... .-........++ +.++. +++|||.+..
T Consensus 135 Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~-------a~~d~~~y~~al----~ni~~--lLkpGG~Lil 197 (256)
T PF01234_consen 135 VKQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLES-------ACKDLDEYRRAL----RNISS--LLKPGGHLIL 197 (256)
T ss_dssp EEEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHH-------H-SSHHHHHHHH----HHHHT--TEEEEEEEEE
T ss_pred hceEEEeeccCCCCCCccccCccchhhhhhhHHHHH-------HcCCHHHHHHHH----HHHHH--HcCCCcEEEE
Confidence 3 37888988743 23 3888887653221 111222233344 44443 7899998754
No 286
>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]
Probab=92.06 E-value=0.44 Score=47.11 Aligned_cols=42 Identities=33% Similarity=0.510 Sum_probs=35.5
Q ss_pred CCCCEEEEEcCcccHHHHHHHHc-CCeEEEEeCCHHHHHHHHH
Q 018261 55 KSTDVILEIGPGTGNLTKKLLEA-GKMVIAVELDSRMVLELQR 96 (359)
Q Consensus 55 ~~~~~VLDIGcGtG~lt~~La~~-~~~V~avDid~~~i~~a~~ 96 (359)
.+-+.|+|+|.|.|.+++.|+=. +..|+|||-|..+.+.|++
T Consensus 152 ~gi~~vvD~GaG~G~LSr~lSl~y~lsV~aIegsq~~~~ra~r 194 (476)
T KOG2651|consen 152 TGIDQVVDVGAGQGHLSRFLSLGYGLSVKAIEGSQRLVERAQR 194 (476)
T ss_pred cCCCeeEEcCCCchHHHHHHhhccCceEEEeccchHHHHHHHH
Confidence 34578999999999999999743 7899999999888877764
No 287
>COG1568 Predicted methyltransferases [General function prediction only]
Probab=92.03 E-value=0.45 Score=45.22 Aligned_cols=136 Identities=18% Similarity=0.282 Sum_probs=85.0
Q ss_pred ccCCCcccccCHHHHHHHHHHc--CCCCCCEEEEEcCcccHHH-HH--HHHcCCeEEEEeCCHHHHHHHHHHhhcCCCCC
Q 018261 31 HKSKGQHILKNPLLVESIVQKA--GIKSTDVILEIGPGTGNLT-KK--LLEAGKMVIAVELDSRMVLELQRRFQSTPYSN 105 (359)
Q Consensus 31 ~k~~GQ~fl~d~~v~~~iv~~~--~~~~~~~VLDIGcGtG~lt-~~--La~~~~~V~avDid~~~i~~a~~~~~~~~~~~ 105 (359)
...+-|.|.+....+.+++-.- +.-.+..|+=+| --.|| ++ |.....+|..||||++++....+..+..++.
T Consensus 125 ~~~yDQgfvTpEttv~Rv~lm~~RGDL~gK~I~vvG--DDDLtsia~aLt~mpk~iaVvDIDERli~fi~k~aee~g~~- 201 (354)
T COG1568 125 LHQYDQGFVTPETTVSRVALMYSRGDLEGKEIFVVG--DDDLTSIALALTGMPKRIAVVDIDERLIKFIEKVAEELGYN- 201 (354)
T ss_pred chhcccccccccceeeeeeeeccccCcCCCeEEEEc--CchhhHHHHHhcCCCceEEEEechHHHHHHHHHHHHHhCcc-
Confidence 3456677777766655543221 223567799888 33333 33 3334689999999999999998888777653
Q ss_pred CeEEEEccccCCCCC-----CCcccccccccccchHHHHHHHhcCchhhHHHHHHHHHHHHHHhccCCCeeEEeecch--
Q 018261 106 RLKVIQGDVLKTDLP-----YFDICVANIPYQISSPLTFKLLFHQPAFRCAIIMFQKEFAMRLVAQPGDKLYCRLSVN-- 178 (359)
Q Consensus 106 ~v~~i~~D~~~~~l~-----~fD~VvsNlPy~i~s~ii~~ll~~~~~~~~~~~~~qkE~a~Rlv~kpGg~~y~~lsv~-- 178 (359)
|++.+.-|..+ ++| .||+.+..+|+-+.. .+++ +.+-++. +..+|+.-|.-++..
T Consensus 202 ~ie~~~~Dlr~-plpe~~~~kFDvfiTDPpeTi~a---lk~F------------lgRGI~t--Lkg~~~aGyfgiT~res 263 (354)
T COG1568 202 NIEAFVFDLRN-PLPEDLKRKFDVFITDPPETIKA---LKLF------------LGRGIAT--LKGEGCAGYFGITRRES 263 (354)
T ss_pred chhheeehhcc-cChHHHHhhCCeeecCchhhHHH---HHHH------------HhccHHH--hcCCCccceEeeeeccc
Confidence 68888888876 333 699999999976542 1111 1233332 445666656555443
Q ss_pred -hhhHHhhhh
Q 018261 179 -TQLHARVSH 187 (359)
Q Consensus 179 -~q~~~~v~~ 187 (359)
..-|.+++.
T Consensus 264 sidkW~eiQr 273 (354)
T COG1568 264 SIDKWREIQR 273 (354)
T ss_pred cHHHHHHHHH
Confidence 245666666
No 288
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=91.72 E-value=0.11 Score=41.63 Aligned_cols=69 Identities=25% Similarity=0.179 Sum_probs=22.6
Q ss_pred EEEcCcccHHHHHHHHc---C--CeEEEEeCCHHHHHHHHHHhhcCCCCCCeEEEEccccCC----CCCCCcccccccc
Q 018261 61 LEIGPGTGNLTKKLLEA---G--KMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKT----DLPYFDICVANIP 130 (359)
Q Consensus 61 LDIGcGtG~lt~~La~~---~--~~V~avDid~~~i~~a~~~~~~~~~~~~v~~i~~D~~~~----~l~~fD~VvsNlP 130 (359)
||||+..|..|..+++. . .+++++|..+. .+..++.++..++..+++++.++..+. ...++|+++....
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~-~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~~~~~dli~iDg~ 78 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPG-DEQAQEIIKKAGLSDRVEFIQGDSPDFLPSLPDGPIDLIFIDGD 78 (106)
T ss_dssp --------------------------EEEESS-------------GGG-BTEEEEES-THHHHHHHHH--EEEEEEES-
T ss_pred CccccccccccccccccccccccCCEEEEECCCc-ccccchhhhhcCCCCeEEEEEcCcHHHHHHcCCCCEEEEEECCC
Confidence 69999999999888764 2 37999999994 222333332223334899999998653 1136788877653
No 289
>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]
Probab=91.39 E-value=0.44 Score=48.95 Aligned_cols=70 Identities=33% Similarity=0.484 Sum_probs=54.9
Q ss_pred CEEEEEcCcccHHHHHHHHc------CCeEEEEeCCHHHHHHHHHHhhcCCCCCCeEEEEccccCCCCC--CCcccccc
Q 018261 58 DVILEIGPGTGNLTKKLLEA------GKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTDLP--YFDICVAN 128 (359)
Q Consensus 58 ~~VLDIGcGtG~lt~~La~~------~~~V~avDid~~~i~~a~~~~~~~~~~~~v~~i~~D~~~~~l~--~fD~VvsN 128 (359)
..|+=+|.|.|-+.....+. ..+++|||.+|.++-.++.. .-..++++|+++.+|+.+++.| +.|++|+-
T Consensus 369 tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~~-n~~~W~~~Vtii~~DMR~w~ap~eq~DI~VSE 446 (649)
T KOG0822|consen 369 TVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQNR-NFECWDNRVTIISSDMRKWNAPREQADIIVSE 446 (649)
T ss_pred EEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhhh-chhhhcCeeEEEeccccccCCchhhccchHHH
Confidence 36788999999887766554 35799999999999888763 3334567999999999998754 67888874
No 290
>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=90.91 E-value=0.72 Score=42.72 Aligned_cols=132 Identities=17% Similarity=0.303 Sum_probs=75.3
Q ss_pred CEEEEEcCcccHHHHHHHHc--------C---CeEEEEeCCHHHHHHHHHHhhcCCCCCCeEEEEccccCCC--------
Q 018261 58 DVILEIGPGTGNLTKKLLEA--------G---KMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTD-------- 118 (359)
Q Consensus 58 ~~VLDIGcGtG~lt~~La~~--------~---~~V~avDid~~~i~~a~~~~~~~~~~~~v~~i~~D~~~~~-------- 118 (359)
.+|+|+++.+|.+++.|+++ + .++++||+.+-+ ++. .|.-+++|+....
T Consensus 43 ~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~Ma-----------PI~-GV~qlq~DIT~~stae~Ii~h 110 (294)
T KOG1099|consen 43 KRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPMA-----------PIE-GVIQLQGDITSASTAEAIIEH 110 (294)
T ss_pred hHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccCC-----------ccC-ceEEeecccCCHhHHHHHHHH
Confidence 58999999999999988865 1 239999997632 222 5777899998743
Q ss_pred --CCCCcccccccccccchHHHHHHHhcCchhhHHHHHHHHHHHHHHhccCCCeeEEee---cchhhhHHhhhhhhccCC
Q 018261 119 --LPYFDICVANIPYQISSPLTFKLLFHQPAFRCAIIMFQKEFAMRLVAQPGDKLYCRL---SVNTQLHARVSHLLKVGK 193 (359)
Q Consensus 119 --l~~fD~VvsNlPy~i~s~ii~~ll~~~~~~~~~~~~~qkE~a~Rlv~kpGg~~y~~l---sv~~q~~~~v~~l~~v~~ 193 (359)
-...|+|||.-.-.+|.- +-+ ....+.-+++.--.++.+ +++|||.+...+ --..-.+..++..+. ..
T Consensus 111 fggekAdlVvcDGAPDvTGl---Hd~--DEy~Q~qLllaAl~i~t~-Vlk~Gg~FVaKifRg~~tslLysql~~ff~-kv 183 (294)
T KOG1099|consen 111 FGGEKADLVVCDGAPDVTGL---HDL--DEYVQAQLLLAALNIATC-VLKPGGSFVAKIFRGRDTSLLYSQLRKFFK-KV 183 (294)
T ss_pred hCCCCccEEEeCCCCCcccc---ccH--HHHHHHHHHHHHHHHHhh-eecCCCeeehhhhccCchHHHHHHHHHHhh-ce
Confidence 125789999865555420 000 001111122211233333 789999986443 111233445555542 23
Q ss_pred CCccCCCCcceeEEE
Q 018261 194 NNFRPPPKVDSSVVR 208 (359)
Q Consensus 194 ~~F~P~P~V~S~vv~ 208 (359)
..+.|+..-.|++-.
T Consensus 184 ~~~KPrsSR~sSiEa 198 (294)
T KOG1099|consen 184 TCAKPRSSRNSSIEA 198 (294)
T ss_pred eeecCCcccccccee
Confidence 556666555555443
No 291
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=90.77 E-value=0.48 Score=47.27 Aligned_cols=83 Identities=16% Similarity=0.177 Sum_probs=57.9
Q ss_pred CCCEEEEEcCcccHHHHHHHHc---CCeEEEEeCCHHHHHHHHHHhhcCCCCC-CeEEEEccccCCC---CCCCcccccc
Q 018261 56 STDVILEIGPGTGNLTKKLLEA---GKMVIAVELDSRMVLELQRRFQSTPYSN-RLKVIQGDVLKTD---LPYFDICVAN 128 (359)
Q Consensus 56 ~~~~VLDIGcGtG~lt~~La~~---~~~V~avDid~~~i~~a~~~~~~~~~~~-~v~~i~~D~~~~~---l~~fD~VvsN 128 (359)
..-+|||.=+|+|.-++..+.. ..+|++-|+|+.+++..++|+..+++.. ++++.+.|+..+- ...||+|=.+
T Consensus 49 ~~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~~~~~~~v~~~DAn~ll~~~~~~fD~IDlD 128 (377)
T PF02005_consen 49 GPIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGLEDERIEVSNMDANVLLYSRQERFDVIDLD 128 (377)
T ss_dssp S-EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT-SGCCEEEEES-HHHHHCHSTT-EEEEEE-
T ss_pred CCceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhccccCceEEEehhhHHHHhhhccccCCEEEeC
Confidence 3458999999999999888876 2789999999999999999999888776 6899999986532 2368866433
Q ss_pred cccccchHHHH
Q 018261 129 IPYQISSPLTF 139 (359)
Q Consensus 129 lPy~i~s~ii~ 139 (359)
||.-.+|.+.
T Consensus 129 -PfGSp~pfld 138 (377)
T PF02005_consen 129 -PFGSPAPFLD 138 (377)
T ss_dssp --SS--HHHHH
T ss_pred -CCCCccHhHH
Confidence 5655555543
No 292
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=90.55 E-value=1.3 Score=45.13 Aligned_cols=72 Identities=22% Similarity=0.399 Sum_probs=55.8
Q ss_pred CCCC-EEEEEcCcccHHHHHHHHcC-CeEEEEeCCHHHHHHHHHHhhcCCCCCCeEEEEccccCCCCC--CCcccccc
Q 018261 55 KSTD-VILEIGPGTGNLTKKLLEAG-KMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTDLP--YFDICVAN 128 (359)
Q Consensus 55 ~~~~-~VLDIGcGtG~lt~~La~~~-~~V~avDid~~~i~~a~~~~~~~~~~~~v~~i~~D~~~~~l~--~fD~VvsN 128 (359)
.+.. ++|-+|||.=-++..+-+.| ..|+.+|+|+-.++....+..... .-.++...|+..+.++ +||+|+.-
T Consensus 46 ~p~~~~~l~lGCGNS~l~e~ly~~G~~dI~~iD~S~V~V~~m~~~~~~~~--~~~~~~~~d~~~l~fedESFdiVIdk 121 (482)
T KOG2352|consen 46 SPSDFKILQLGCGNSELSEHLYKNGFEDITNIDSSSVVVAAMQVRNAKER--PEMQMVEMDMDQLVFEDESFDIVIDK 121 (482)
T ss_pred chhhceeEeecCCCCHHHHHHHhcCCCCceeccccHHHHHHHHhccccCC--cceEEEEecchhccCCCcceeEEEec
Confidence 4555 99999999999999998887 569999999999988776653222 2577888888877665 78877653
No 293
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=90.28 E-value=0.41 Score=41.00 Aligned_cols=53 Identities=17% Similarity=0.271 Sum_probs=41.0
Q ss_pred eEEEEeCCHHHHHHHHHHhhcCCCCCCeEEEEccccCCCC---C-CCcccccccccc
Q 018261 80 MVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTDL---P-YFDICVANIPYQ 132 (359)
Q Consensus 80 ~V~avDid~~~i~~a~~~~~~~~~~~~v~~i~~D~~~~~l---~-~fD~VvsNlPy~ 132 (359)
+|+|+||.+++++.+++++...++..++++++..-..++. + .+|+++-|+=|=
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~l~~~i~~~~v~~~iFNLGYL 57 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGLEDRVTLILDSHENLDEYIPEGPVDAAIFNLGYL 57 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGGGGGT--S--EEEEEEEESB-
T ss_pred CEEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHHHHhhCccCCcCEEEEECCcC
Confidence 6999999999999999999988776789999998776542 2 589999998764
No 294
>PTZ00357 methyltransferase; Provisional
Probab=89.92 E-value=0.74 Score=48.86 Aligned_cols=70 Identities=23% Similarity=0.328 Sum_probs=48.6
Q ss_pred EEEEEcCcccHHHHHHHHc----C--CeEEEEeCCHHHHHHHHHHhhc-CCC-------CCCeEEEEccccCCCCC----
Q 018261 59 VILEIGPGTGNLTKKLLEA----G--KMVIAVELDSRMVLELQRRFQS-TPY-------SNRLKVIQGDVLKTDLP---- 120 (359)
Q Consensus 59 ~VLDIGcGtG~lt~~La~~----~--~~V~avDid~~~i~~a~~~~~~-~~~-------~~~v~~i~~D~~~~~l~---- 120 (359)
.|+=+|+|-|-|....++. + .+|+|||.++..+.....+... ..+ .++|++|..|+..+..+
T Consensus 703 VImVVGAGRGPLVdraLrAak~~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W~~pe~~~ 782 (1072)
T PTZ00357 703 HLVLLGCGRGPLIDECLHAVSALGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIATAAENG 782 (1072)
T ss_pred EEEEEcCCccHHHHHHHHHHHHcCCcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCcccccccccccc
Confidence 5899999999887666554 2 5899999997755454444311 122 24699999999887533
Q ss_pred ---------CCcccccc
Q 018261 121 ---------YFDICVAN 128 (359)
Q Consensus 121 ---------~fD~VvsN 128 (359)
.+|+|||-
T Consensus 783 s~~~P~~~gKaDIVVSE 799 (1072)
T PTZ00357 783 SLTLPADFGLCDLIVSE 799 (1072)
T ss_pred cccccccccccceehHh
Confidence 47888774
No 295
>KOG2360 consensus Proliferation-associated nucleolar protein (NOL1) [Cell cycle control, cell division, chromosome partitioning]
Probab=89.44 E-value=0.55 Score=46.48 Aligned_cols=86 Identities=16% Similarity=0.198 Sum_probs=64.8
Q ss_pred HHHHHHcCCCCCCEEEEEcCcccHHHHHHHHc---CCeEEEEeCCHHHHHHHHHHhhcCCCCCCeEEEEccccCCCC-CC
Q 018261 46 ESIVQKAGIKSTDVILEIGPGTGNLTKKLLEA---GKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTDL-PY 121 (359)
Q Consensus 46 ~~iv~~~~~~~~~~VLDIGcGtG~lt~~La~~---~~~V~avDid~~~i~~a~~~~~~~~~~~~v~~i~~D~~~~~l-~~ 121 (359)
-..+..++..++.+|+|++|-.|.-|.+++.. ..+++|+|.|+.-++..++.+...+.. .++.+.+|++.... +.
T Consensus 203 clpA~ll~p~~g~~v~d~caapg~KTsH~a~i~~n~gki~afe~d~~r~~tl~~~l~~ag~~-~~~~~~~df~~t~~~~~ 281 (413)
T KOG2360|consen 203 CLPAHLLDPRPGSRVIDTCAAPGNKTSHLAAIMRNQGKIYAFERDAKRAATLRKLLKIAGVS-IVESVEGDFLNTATPEK 281 (413)
T ss_pred cchhhhcCCCCCCceeeeccccccchhhHHHHhhccCCcchhhhhhHHHHHHHHHHHHcCCC-ccccccccccCCCCccc
Confidence 34455677788899999999999999998865 478999999999999999888766653 67778999998521 12
Q ss_pred C---cccccccccc
Q 018261 122 F---DICVANIPYQ 132 (359)
Q Consensus 122 f---D~VvsNlPy~ 132 (359)
| -.+++.++.+
T Consensus 282 ~~~v~~iL~DpscS 295 (413)
T KOG2360|consen 282 FRDVTYILVDPSCS 295 (413)
T ss_pred ccceeEEEeCCCCC
Confidence 2 2455555544
No 296
>PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown.; PDB: 2K4M_A.
Probab=89.22 E-value=0.84 Score=38.34 Aligned_cols=72 Identities=26% Similarity=0.405 Sum_probs=38.5
Q ss_pred HHHHHHHHcCCCCCCEEEEEcCcccH-HHHHHHHcCCeEEEEeCCHHHHHHHHHHhhcCCCCCCeEEEEccccCCCCC--
Q 018261 44 LVESIVQKAGIKSTDVILEIGPGTGN-LTKKLLEAGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTDLP-- 120 (359)
Q Consensus 44 v~~~iv~~~~~~~~~~VLDIGcGtG~-lt~~La~~~~~V~avDid~~~i~~a~~~~~~~~~~~~v~~i~~D~~~~~l~-- 120 (359)
+++.|++.. ...+|+|||-|.=. .+..|.+.|..|+++|+.+. .+. ..+.++.-|+.+.++.
T Consensus 4 ~a~~ia~~~---~~~kiVEVGiG~~~~vA~~L~~~G~dV~~tDi~~~---~a~---------~g~~~v~DDif~P~l~iY 68 (127)
T PF03686_consen 4 FAEYIARLN---NYGKIVEVGIGFNPEVAKKLKERGFDVIATDINPR---KAP---------EGVNFVVDDIFNPNLEIY 68 (127)
T ss_dssp HHHHHHHHS----SSEEEEET-TT--HHHHHHHHHS-EEEEE-SS-S----------------STTEE---SSS--HHHH
T ss_pred HHHHHHHhC---CCCcEEEECcCCCHHHHHHHHHcCCcEEEEECccc---ccc---------cCcceeeecccCCCHHHh
Confidence 344555543 34599999998753 44566667899999999998 111 1577899999986544
Q ss_pred -CCccccc-ccc
Q 018261 121 -YFDICVA-NIP 130 (359)
Q Consensus 121 -~fD~Vvs-NlP 130 (359)
..|+|.| ++|
T Consensus 69 ~~a~lIYSiRPP 80 (127)
T PF03686_consen 69 EGADLIYSIRPP 80 (127)
T ss_dssp TTEEEEEEES--
T ss_pred cCCcEEEEeCCC
Confidence 4567776 344
No 297
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=89.15 E-value=1 Score=44.17 Aligned_cols=49 Identities=20% Similarity=0.293 Sum_probs=40.0
Q ss_pred HHcCCCCCCEEEEEcCc-ccHHHHHHHH-cCCeEEEEeCCHHHHHHHHHHh
Q 018261 50 QKAGIKSTDVILEIGPG-TGNLTKKLLE-AGKMVIAVELDSRMVLELQRRF 98 (359)
Q Consensus 50 ~~~~~~~~~~VLDIGcG-tG~lt~~La~-~~~~V~avDid~~~i~~a~~~~ 98 (359)
...++.++++|+=+|+| .|.++..+++ .+++|+++|.+++-.+.|++.-
T Consensus 160 k~~~~~pG~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~~~K~e~a~~lG 210 (339)
T COG1064 160 KKANVKPGKWVAVVGAGGLGHMAVQYAKAMGAEVIAITRSEEKLELAKKLG 210 (339)
T ss_pred hhcCCCCCCEEEEECCcHHHHHHHHHHHHcCCeEEEEeCChHHHHHHHHhC
Confidence 44567889998888877 5568888888 4899999999999988888763
No 298
>COG1255 Uncharacterized protein conserved in archaea [Function unknown]
Probab=88.28 E-value=1.2 Score=36.81 Aligned_cols=59 Identities=20% Similarity=0.389 Sum_probs=43.2
Q ss_pred CCEEEEEcCccc-HHHHHHHHcCCeEEEEeCCHHHHHHHHHHhhcCCCCCCeEEEEccccCCCCC---CCccccc
Q 018261 57 TDVILEIGPGTG-NLTKKLLEAGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTDLP---YFDICVA 127 (359)
Q Consensus 57 ~~~VLDIGcGtG-~lt~~La~~~~~V~avDid~~~i~~a~~~~~~~~~~~~v~~i~~D~~~~~l~---~fD~Vvs 127 (359)
..+|+|+|-|-= ..+..|+++|..|+++||.+. .+. ..++++..|+++.... ..|+|.|
T Consensus 14 ~gkVvEVGiG~~~~VA~~L~e~g~dv~atDI~~~---~a~---------~g~~~v~DDitnP~~~iY~~A~lIYS 76 (129)
T COG1255 14 RGKVVEVGIGFFLDVAKRLAERGFDVLATDINEK---TAP---------EGLRFVVDDITNPNISIYEGADLIYS 76 (129)
T ss_pred CCcEEEEccchHHHHHHHHHHcCCcEEEEecccc---cCc---------ccceEEEccCCCccHHHhhCccceee
Confidence 348999998764 245677788999999999987 111 1578999999986654 3566765
No 299
>PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function.; PDB: 2PY6_A.
Probab=86.85 E-value=1.5 Score=37.20 Aligned_cols=53 Identities=21% Similarity=0.258 Sum_probs=32.1
Q ss_pred EEcCccc--HHHHHHH--Hc--CCeEEEEeCCHHHHHHHHHH--hhcCCCCCCeEEEEccc
Q 018261 62 EIGPGTG--NLTKKLL--EA--GKMVIAVELDSRMVLELQRR--FQSTPYSNRLKVIQGDV 114 (359)
Q Consensus 62 DIGcGtG--~lt~~La--~~--~~~V~avDid~~~i~~a~~~--~~~~~~~~~v~~i~~D~ 114 (359)
|||+..| ..+..++ .. ..+|+++|.+|..++.++++ +..+.....+++.....
T Consensus 1 DvGA~~G~~~~~~~~~~~~~~~~~~v~~~Ep~p~~~~~l~~~~~~~l~~~~~~~~~~~~~~ 61 (167)
T PF05050_consen 1 DVGANIGFWSSTVYFLEKKCGPGGRVHAFEPNPSNFEKLKRNLNLALNDKDGEVEFHPYAV 61 (167)
T ss_dssp EES-TTS--HHHHHHHHHHTS--SEEEEE---HHHHHHHHHH--HHHTTTSTTGGEEEE-S
T ss_pred CcccCCChhHHHHHHHHHHcCCCCEEEEEECCHHHHHHHhHHHHHHhcCCCceEEEEEeec
Confidence 8999999 6655553 22 57899999999999999998 44433222455555444
No 300
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=86.82 E-value=1.6 Score=35.10 Aligned_cols=57 Identities=26% Similarity=0.396 Sum_probs=39.7
Q ss_pred CcccHHHHHHHHc----CCeEEEEeCCHHHHHHHHHHhhcCCCCCCeEEEEccccCCC------CCCCccccccc
Q 018261 65 PGTGNLTKKLLEA----GKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTD------LPYFDICVANI 129 (359)
Q Consensus 65 cGtG~lt~~La~~----~~~V~avDid~~~i~~a~~~~~~~~~~~~v~~i~~D~~~~~------l~~fD~VvsNl 129 (359)
||.|.++..+++. +.+|+.+|.+++.++.+++. .+.++.||..+.. +...+.+++..
T Consensus 4 ~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~--------~~~~i~gd~~~~~~l~~a~i~~a~~vv~~~ 70 (116)
T PF02254_consen 4 IGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREE--------GVEVIYGDATDPEVLERAGIEKADAVVILT 70 (116)
T ss_dssp ES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHT--------TSEEEES-TTSHHHHHHTTGGCESEEEEES
T ss_pred EcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhc--------ccccccccchhhhHHhhcCccccCEEEEcc
Confidence 5667777777654 45899999999998888764 4679999998643 33566666543
No 301
>COG0863 DNA modification methylase [DNA replication, recombination, and repair]
Probab=86.24 E-value=2.9 Score=39.50 Aligned_cols=61 Identities=21% Similarity=0.306 Sum_probs=52.1
Q ss_pred cCHHHHHHHHHHcCCCCCCEEEEEcCcccHHHHHHHHcCCeEEEEeCCHHHHHHHHHHhhcC
Q 018261 40 KNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEAGKMVIAVELDSRMVLELQRRFQST 101 (359)
Q Consensus 40 ~d~~v~~~iv~~~~~~~~~~VLDIGcGtG~lt~~La~~~~~V~avDid~~~i~~a~~~~~~~ 101 (359)
.+..+..+++.. .-.+++.|||.=+|+|.........+...+++|+++..+..+.+++...
T Consensus 207 ~P~~l~~r~i~~-~s~~~diVlDpf~GsGtt~~aa~~~~r~~ig~e~~~~y~~~~~~r~~~~ 267 (302)
T COG0863 207 KPLALIERLIRD-YSFPGDIVLDPFAGSGTTGIAAKNLGRRFIGIEINPEYVEVALKRLQEG 267 (302)
T ss_pred ChHHHHHHHHHh-cCCCCCEEeecCCCCChHHHHHHHcCCceEEEecCHHHHHHHHHHHHhh
Confidence 345677778777 5678999999999999988887778999999999999999999988653
No 302
>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []. The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing
Probab=86.18 E-value=2.4 Score=40.10 Aligned_cols=79 Identities=15% Similarity=0.291 Sum_probs=50.1
Q ss_pred HHHHHHHHHcCCCCCCEEEEEcCcccHHHHHHHHcC-------CeEEEEeCCHHHHHHHHHHhhcCCCCCCeEEEEcccc
Q 018261 43 LLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEAG-------KMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVL 115 (359)
Q Consensus 43 ~v~~~iv~~~~~~~~~~VLDIGcGtG~lt~~La~~~-------~~V~avDid~~~i~~a~~~~~~~~~~~~v~~i~~D~~ 115 (359)
.++..|.+.--+.++..++|.|||.|.|+..++..- ..++.||-...-. ..-..+........++=+..|+.
T Consensus 5 Sli~~l~~~~ll~~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR~~~R~-K~D~~~~~~~~~~~~~R~riDI~ 83 (259)
T PF05206_consen 5 SLIGNLEQRGLLNPDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDRASNRH-KADNKIRKDESEPKFERLRIDIK 83 (259)
T ss_pred HHHHHHHHcCCCCCCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEecCcccc-cchhhhhccCCCCceEEEEEEee
Confidence 344444444445677799999999999999998752 4789999754322 22222222211125677888998
Q ss_pred CCCCCCC
Q 018261 116 KTDLPYF 122 (359)
Q Consensus 116 ~~~l~~f 122 (359)
++++..+
T Consensus 84 dl~l~~~ 90 (259)
T PF05206_consen 84 DLDLSKL 90 (259)
T ss_pred ccchhhc
Confidence 8876543
No 303
>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length. The function of this family is unknown.
Probab=86.13 E-value=2.2 Score=39.14 Aligned_cols=93 Identities=20% Similarity=0.235 Sum_probs=63.2
Q ss_pred CCcccccCHHHHHHHHHHcCCCCCCEEEEEcCcccH--HHHHHHHc----CCeEEEEeCCHHHHHHHHHHhhcCCCCCCe
Q 018261 34 KGQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGN--LTKKLLEA----GKMVIAVELDSRMVLELQRRFQSTPYSNRL 107 (359)
Q Consensus 34 ~GQ~fl~d~~v~~~iv~~~~~~~~~~VLDIGcGtG~--lt~~La~~----~~~V~avDid~~~i~~a~~~~~~~~~~~~v 107 (359)
.+|++ ..|.+.+.|...+.-.....++|+.|+-|. .|+.|+-. +.++++|-.+++-....++.+...++.+-+
T Consensus 20 ~c~~~-~ep~~aEfISAlAAG~nAkliVe~~s~g~~~~ttiaLaaAAr~TgGR~vCIvp~~~~~~~~~~~l~~~~~~~~v 98 (218)
T PF07279_consen 20 MCKKF-KEPGVAEFISALAAGWNAKLIVEAWSSGGAISTTIALAAAARQTGGRHVCIVPDEQSLSEYKKALGEAGLSDVV 98 (218)
T ss_pred Hhhhc-CCCCHHHHHHHHhccccceEEEEEecCCCchHhHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHhhccccccc
Confidence 45555 357778877776654556789999766442 45555432 789999999999888888888766655567
Q ss_pred EEEEccccC-C--CCCCCccccc
Q 018261 108 KVIQGDVLK-T--DLPYFDICVA 127 (359)
Q Consensus 108 ~~i~~D~~~-~--~l~~fD~Vvs 127 (359)
+|+.++..+ + .+...|.++.
T Consensus 99 Efvvg~~~e~~~~~~~~iDF~vV 121 (218)
T PF07279_consen 99 EFVVGEAPEEVMPGLKGIDFVVV 121 (218)
T ss_pred eEEecCCHHHHHhhccCCCEEEE
Confidence 998888533 1 2345676554
No 304
>PRK11524 putative methyltransferase; Provisional
Probab=85.79 E-value=1.2 Score=42.49 Aligned_cols=28 Identities=32% Similarity=0.532 Sum_probs=22.6
Q ss_pred CeEEEEccccCC----CCCCCccccccccccc
Q 018261 106 RLKVIQGDVLKT----DLPYFDICVANIPYQI 133 (359)
Q Consensus 106 ~v~~i~~D~~~~----~l~~fD~VvsNlPy~i 133 (359)
+.+++++|++++ +-.+||+|++++||..
T Consensus 8 ~~~i~~gD~~~~l~~l~~~siDlIitDPPY~~ 39 (284)
T PRK11524 8 AKTIIHGDALTELKKIPSESVDLIFADPPYNI 39 (284)
T ss_pred CCEEEeccHHHHHHhcccCcccEEEECCCccc
Confidence 567899999873 2237999999999986
No 305
>PRK05867 short chain dehydrogenase; Provisional
Probab=85.77 E-value=15 Score=33.52 Aligned_cols=74 Identities=22% Similarity=0.230 Sum_probs=52.0
Q ss_pred CCCEEEEEcCccc---HHHHHHHHcCCeEEEEeCCHHHHHHHHHHhhcCCCCCCeEEEEccccCCC------------CC
Q 018261 56 STDVILEIGPGTG---NLTKKLLEAGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTD------------LP 120 (359)
Q Consensus 56 ~~~~VLDIGcGtG---~lt~~La~~~~~V~avDid~~~i~~a~~~~~~~~~~~~v~~i~~D~~~~~------------l~ 120 (359)
.+.++|=.|++.| .++..|++.|.+|+.++.++..++.+.+.+...+ .++.++.+|+.+.. +.
T Consensus 8 ~~k~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~g 85 (253)
T PRK05867 8 HGKRALITGASTGIGKRVALAYVEAGAQVAIAARHLDALEKLADEIGTSG--GKVVPVCCDVSQHQQVTSMLDQVTAELG 85 (253)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcC--CeEEEEEccCCCHHHHHHHHHHHHHHhC
Confidence 4678999998665 3555666778999999999887776666554433 36778888887532 23
Q ss_pred CCccccccccc
Q 018261 121 YFDICVANIPY 131 (359)
Q Consensus 121 ~fD~VvsNlPy 131 (359)
..|.+|.|..+
T Consensus 86 ~id~lv~~ag~ 96 (253)
T PRK05867 86 GIDIAVCNAGI 96 (253)
T ss_pred CCCEEEECCCC
Confidence 57888887644
No 306
>PRK07063 short chain dehydrogenase; Provisional
Probab=85.73 E-value=19 Score=33.02 Aligned_cols=75 Identities=19% Similarity=0.287 Sum_probs=50.4
Q ss_pred CCCEEEEEcCccc---HHHHHHHHcCCeEEEEeCCHHHHHHHHHHhhcCCCCCCeEEEEccccCCC------------CC
Q 018261 56 STDVILEIGPGTG---NLTKKLLEAGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTD------------LP 120 (359)
Q Consensus 56 ~~~~VLDIGcGtG---~lt~~La~~~~~V~avDid~~~i~~a~~~~~~~~~~~~v~~i~~D~~~~~------------l~ 120 (359)
.+.++|=.|++.| .++..|++.|.+|+.++.++..++.+.+.+.......++.++.+|+.+.. +.
T Consensus 6 ~~k~vlVtGas~gIG~~~a~~l~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g 85 (260)
T PRK07063 6 AGKVALVTGAAQGIGAAIARAFAREGAAVALADLDAALAERAAAAIARDVAGARVLAVPADVTDAASVAAAVAAAEEAFG 85 (260)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhccCCceEEEEEccCCCHHHHHHHHHHHHHHhC
Confidence 4578898897654 24555666789999999988877766665543111136788899987632 12
Q ss_pred CCcccccccc
Q 018261 121 YFDICVANIP 130 (359)
Q Consensus 121 ~fD~VvsNlP 130 (359)
..|.+|.|.-
T Consensus 86 ~id~li~~ag 95 (260)
T PRK07063 86 PLDVLVNNAG 95 (260)
T ss_pred CCcEEEECCC
Confidence 4688887754
No 307
>PRK08339 short chain dehydrogenase; Provisional
Probab=84.10 E-value=25 Score=32.56 Aligned_cols=73 Identities=18% Similarity=0.249 Sum_probs=49.8
Q ss_pred CCCEEEEEcCccc---HHHHHHHHcCCeEEEEeCCHHHHHHHHHHhhcCCCCCCeEEEEccccCCC-----------CCC
Q 018261 56 STDVILEIGPGTG---NLTKKLLEAGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTD-----------LPY 121 (359)
Q Consensus 56 ~~~~VLDIGcGtG---~lt~~La~~~~~V~avDid~~~i~~a~~~~~~~~~~~~v~~i~~D~~~~~-----------l~~ 121 (359)
.+.++|=.|++.| .++..|++.|++|+.++.++.-++.+.+.+.... ..++.++.+|+.+.. +..
T Consensus 7 ~~k~~lItGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~Dv~~~~~i~~~~~~~~~~g~ 85 (263)
T PRK08339 7 SGKLAFTTASSKGIGFGVARVLARAGADVILLSRNEENLKKAREKIKSES-NVDVSYIVADLTKREDLERTVKELKNIGE 85 (263)
T ss_pred CCCEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhc-CCceEEEEecCCCHHHHHHHHHHHHhhCC
Confidence 4677888888665 3566677779999999999877666655543221 126888999987642 124
Q ss_pred Cccccccc
Q 018261 122 FDICVANI 129 (359)
Q Consensus 122 fD~VvsNl 129 (359)
.|++|.|.
T Consensus 86 iD~lv~na 93 (263)
T PRK08339 86 PDIFFFST 93 (263)
T ss_pred CcEEEECC
Confidence 68777775
No 308
>PRK08277 D-mannonate oxidoreductase; Provisional
Probab=84.04 E-value=25 Score=32.54 Aligned_cols=73 Identities=18% Similarity=0.247 Sum_probs=49.1
Q ss_pred CCCEEEEEcCccc---HHHHHHHHcCCeEEEEeCCHHHHHHHHHHhhcCCCCCCeEEEEccccCCC------------CC
Q 018261 56 STDVILEIGPGTG---NLTKKLLEAGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTD------------LP 120 (359)
Q Consensus 56 ~~~~VLDIGcGtG---~lt~~La~~~~~V~avDid~~~i~~a~~~~~~~~~~~~v~~i~~D~~~~~------------l~ 120 (359)
.+.++|=.|++.| .++..|++.|.+|+.++.++...+.+.+.+...+ .++.++.+|+.+.. ++
T Consensus 9 ~~k~vlVtGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~v~~~~~~~~~~~g 86 (278)
T PRK08277 9 KGKVAVITGGGGVLGGAMAKELARAGAKVAILDRNQEKAEAVVAEIKAAG--GEALAVKADVLDKESLEQARQQILEDFG 86 (278)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CeEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 3567888887654 2455566678999999998876666555554332 26788899987532 13
Q ss_pred CCcccccccc
Q 018261 121 YFDICVANIP 130 (359)
Q Consensus 121 ~fD~VvsNlP 130 (359)
..|++|.|..
T Consensus 87 ~id~li~~ag 96 (278)
T PRK08277 87 PCDILINGAG 96 (278)
T ss_pred CCCEEEECCC
Confidence 5788887754
No 309
>PRK06172 short chain dehydrogenase; Provisional
Probab=83.17 E-value=24 Score=32.07 Aligned_cols=74 Identities=18% Similarity=0.158 Sum_probs=49.5
Q ss_pred CCCEEEEEcCccc---HHHHHHHHcCCeEEEEeCCHHHHHHHHHHhhcCCCCCCeEEEEccccCCC------------CC
Q 018261 56 STDVILEIGPGTG---NLTKKLLEAGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTD------------LP 120 (359)
Q Consensus 56 ~~~~VLDIGcGtG---~lt~~La~~~~~V~avDid~~~i~~a~~~~~~~~~~~~v~~i~~D~~~~~------------l~ 120 (359)
.+.+||=.|++.| .+...|++.+.+|+.++.++.-++.+.+.+...+ .++.++.+|+.+.. ++
T Consensus 6 ~~k~ilItGas~~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~i~~~~~~~~~~~g 83 (253)
T PRK06172 6 SGKVALVTGGAAGIGRATALAFAREGAKVVVADRDAAGGEETVALIREAG--GEALFVACDVTRDAEVKALVEQTIAAYG 83 (253)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcC--CceEEEEcCCCCHHHHHHHHHHHHHHhC
Confidence 4578888887544 2444556668999999999876665555554333 36888999987532 13
Q ss_pred CCccccccccc
Q 018261 121 YFDICVANIPY 131 (359)
Q Consensus 121 ~fD~VvsNlPy 131 (359)
.+|.+|.|.-+
T Consensus 84 ~id~li~~ag~ 94 (253)
T PRK06172 84 RLDYAFNNAGI 94 (253)
T ss_pred CCCEEEECCCC
Confidence 46888877644
No 310
>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=82.94 E-value=21 Score=34.44 Aligned_cols=112 Identities=16% Similarity=0.202 Sum_probs=76.5
Q ss_pred CCCEEEEEcCccc---HHHHHHHHcCCeEEEEeCCHHHHHHHHHHhhcCCCCCCeEEEEccccCCC------------CC
Q 018261 56 STDVILEIGPGTG---NLTKKLLEAGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTD------------LP 120 (359)
Q Consensus 56 ~~~~VLDIGcGtG---~lt~~La~~~~~V~avDid~~~i~~a~~~~~~~~~~~~v~~i~~D~~~~~------------l~ 120 (359)
.+..||==|.|.| .++.++|+++.+++..|++..-.....+.++..+ ++....+|+.+.+ ..
T Consensus 37 ~g~~vLITGgg~GlGr~ialefa~rg~~~vl~Din~~~~~etv~~~~~~g---~~~~y~cdis~~eei~~~a~~Vk~e~G 113 (300)
T KOG1201|consen 37 SGEIVLITGGGSGLGRLIALEFAKRGAKLVLWDINKQGNEETVKEIRKIG---EAKAYTCDISDREEIYRLAKKVKKEVG 113 (300)
T ss_pred cCCEEEEeCCCchHHHHHHHHHHHhCCeEEEEeccccchHHHHHHHHhcC---ceeEEEecCCCHHHHHHHHHHHHHhcC
Confidence 5678999999988 4777888889999999999999888888777654 7888889987643 22
Q ss_pred CCcccccccc-------cccchHHHHHHHhcCchhhHHHHHHHHHHHHHHhccCCCeeEE
Q 018261 121 YFDICVANIP-------YQISSPLTFKLLFHQPAFRCAIIMFQKEFAMRLVAQPGDKLYC 173 (359)
Q Consensus 121 ~fD~VvsNlP-------y~i~s~ii~~ll~~~~~~~~~~~~~qkE~a~Rlv~kpGg~~y~ 173 (359)
..|++|.|.- ++.+.+.+.+.++-.- .+.+..-+++.-++.-...|.+..
T Consensus 114 ~V~ILVNNAGI~~~~~ll~~~d~ei~k~~~vN~---~~~f~t~kaFLP~M~~~~~GHIV~ 170 (300)
T KOG1201|consen 114 DVDILVNNAGIVTGKKLLDCSDEEIQKTFDVNT---IAHFWTTKAFLPKMLENNNGHIVT 170 (300)
T ss_pred CceEEEeccccccCCCccCCCHHHHHHHHHHhh---HHHHHHHHHHhHHHHhcCCceEEE
Confidence 4677776642 3445555555543211 223344467776666666666543
No 311
>PRK08862 short chain dehydrogenase; Provisional
Probab=82.94 E-value=25 Score=31.89 Aligned_cols=72 Identities=14% Similarity=0.186 Sum_probs=51.0
Q ss_pred CCCEEEEEcCcccH---HHHHHHHcCCeEEEEeCCHHHHHHHHHHhhcCCCCCCeEEEEccccCCC------------CC
Q 018261 56 STDVILEIGPGTGN---LTKKLLEAGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTD------------LP 120 (359)
Q Consensus 56 ~~~~VLDIGcGtG~---lt~~La~~~~~V~avDid~~~i~~a~~~~~~~~~~~~v~~i~~D~~~~~------------l~ 120 (359)
.+.++|=.|++.|. ++..|++.|.+|+.+..++..++.+.+.+...+ .++..+..|..+.. ++
T Consensus 4 ~~k~~lVtGas~GIG~aia~~la~~G~~V~~~~r~~~~l~~~~~~i~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~g 81 (227)
T PRK08862 4 KSSIILITSAGSVLGRTISCHFARLGATLILCDQDQSALKDTYEQCSALT--DNVYSFQLKDFSQESIRHLFDAIEQQFN 81 (227)
T ss_pred CCeEEEEECCccHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcC--CCeEEEEccCCCHHHHHHHHHHHHHHhC
Confidence 45788889988874 667777789999999999888776665554433 25666777765432 23
Q ss_pred -CCccccccc
Q 018261 121 -YFDICVANI 129 (359)
Q Consensus 121 -~fD~VvsNl 129 (359)
..|++|.|.
T Consensus 82 ~~iD~li~na 91 (227)
T PRK08862 82 RAPDVLVNNW 91 (227)
T ss_pred CCCCEEEECC
Confidence 578888876
No 312
>PRK07814 short chain dehydrogenase; Provisional
Probab=82.93 E-value=26 Score=32.22 Aligned_cols=72 Identities=21% Similarity=0.316 Sum_probs=47.8
Q ss_pred CCCEEEEEcCcccHHHH----HHHHcCCeEEEEeCCHHHHHHHHHHhhcCCCCCCeEEEEccccCCC------------C
Q 018261 56 STDVILEIGPGTGNLTK----KLLEAGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTD------------L 119 (359)
Q Consensus 56 ~~~~VLDIGcGtG~lt~----~La~~~~~V~avDid~~~i~~a~~~~~~~~~~~~v~~i~~D~~~~~------------l 119 (359)
.+.++|=.|. +|.++. .|+++|.+|+.++.++.-++.+.+.+...+ .++.++.+|+.+.. +
T Consensus 9 ~~~~vlItGa-sggIG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~ 85 (263)
T PRK07814 9 DDQVAVVTGA-GRGLGAAIALAFAEAGADVLIAARTESQLDEVAEQIRAAG--RRAHVVAADLAHPEATAGLAGQAVEAF 85 (263)
T ss_pred CCCEEEEECC-CChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence 4678888885 444444 455568999999999876666555543322 26788889887642 1
Q ss_pred CCCcccccccc
Q 018261 120 PYFDICVANIP 130 (359)
Q Consensus 120 ~~fD~VvsNlP 130 (359)
+.+|.||.|.-
T Consensus 86 ~~id~vi~~Ag 96 (263)
T PRK07814 86 GRLDIVVNNVG 96 (263)
T ss_pred CCCCEEEECCC
Confidence 35688877653
No 313
>PRK08267 short chain dehydrogenase; Provisional
Probab=82.93 E-value=24 Score=32.31 Aligned_cols=70 Identities=16% Similarity=0.096 Sum_probs=47.3
Q ss_pred CEEEEEcCccc---HHHHHHHHcCCeEEEEeCCHHHHHHHHHHhhcCCCCCCeEEEEccccCCC-------------CCC
Q 018261 58 DVILEIGPGTG---NLTKKLLEAGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTD-------------LPY 121 (359)
Q Consensus 58 ~~VLDIGcGtG---~lt~~La~~~~~V~avDid~~~i~~a~~~~~~~~~~~~v~~i~~D~~~~~-------------l~~ 121 (359)
.++|=.|++.| .++..|++.|.+|++++.++.-++.+.+.... .++.++.+|+.+.. ...
T Consensus 2 k~vlItGasg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~----~~~~~~~~D~~~~~~v~~~~~~~~~~~~~~ 77 (260)
T PRK08267 2 KSIFITGAASGIGRATALLFAAEGWRVGAYDINEAGLAALAAELGA----GNAWTGALDVTDRAAWDAALADFAAATGGR 77 (260)
T ss_pred cEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcC----CceEEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence 35777887543 24555666689999999998876666554431 26889999997632 124
Q ss_pred Cccccccccc
Q 018261 122 FDICVANIPY 131 (359)
Q Consensus 122 fD~VvsNlPy 131 (359)
+|.||.|.-+
T Consensus 78 id~vi~~ag~ 87 (260)
T PRK08267 78 LDVLFNNAGI 87 (260)
T ss_pred CCEEEECCCC
Confidence 6888877644
No 314
>PRK07062 short chain dehydrogenase; Provisional
Probab=82.86 E-value=27 Score=32.04 Aligned_cols=76 Identities=25% Similarity=0.256 Sum_probs=49.7
Q ss_pred CCCEEEEEcCccc---HHHHHHHHcCCeEEEEeCCHHHHHHHHHHhhcCCCCCCeEEEEccccCCC------------CC
Q 018261 56 STDVILEIGPGTG---NLTKKLLEAGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTD------------LP 120 (359)
Q Consensus 56 ~~~~VLDIGcGtG---~lt~~La~~~~~V~avDid~~~i~~a~~~~~~~~~~~~v~~i~~D~~~~~------------l~ 120 (359)
.+.++|=.|++.| .++..|++.|.+|+.++.++.-++.+.+.+.......++.++.+|+.+.. +.
T Consensus 7 ~~k~~lItGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g 86 (265)
T PRK07062 7 EGRVAVVTGGSSGIGLATVELLLEAGASVAICGRDEERLASAEARLREKFPGARLLAARCDVLDEADVAAFAAAVEARFG 86 (265)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEecCCCHHHHHHHHHHHHHhcC
Confidence 4678888997665 35555666789999999998766665554432211125778888887642 23
Q ss_pred CCccccccccc
Q 018261 121 YFDICVANIPY 131 (359)
Q Consensus 121 ~fD~VvsNlPy 131 (359)
..|.+|.|.-+
T Consensus 87 ~id~li~~Ag~ 97 (265)
T PRK07062 87 GVDMLVNNAGQ 97 (265)
T ss_pred CCCEEEECCCC
Confidence 46888877643
No 315
>PF02086 MethyltransfD12: D12 class N6 adenine-specific DNA methyltransferase; InterPro: IPR012327 In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. There are 2 major classes of DNA methyltransferase that differ in the nature of the modifications they effect. The members of one class (C-MTases) methylate a ring carbon and form C5-methylcytosine (see IPR001525 from INTERPRO). Members of the second class (N-MTases) methylate exocyclic nitrogens and form either N4-methylcytosine (N4-MTases) or N6-methyladenine (N6-MTases). Both classes of MTase utilise the cofactor S-adenosyl-L-methionine (SAM) as the methyl donor and are active as monomeric enzymes []. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence. It has been shown [, , , ] that A-Mtases contain a conserved motif Asp/Asn-Pro-Pro-Tyr/Phe in their N-terminal section, this conserved region could be involved in substrate binding or in the catalytic activity. The structure of N6-MTase TaqI (M.TaqI) has been resolved to 2.4 A []. The molecule folds into 2 domains, an N-terminal catalytic domain, which contains the catalytic and cofactor binding sites, and comprises a central 9-stranded beta-sheet, surrounded by 5 helices; and a C-terminal DNA recognition domain, which is formed by 4 small beta-sheets and 8 alpha-helices. The N- and C-terminal domains form a cleft that accommodates the DNA substrate. A classification of N-MTases has been proposed, based on conserved motif (CM) arrangements []. According to this classification, N6-MTases that have a DPPY motif (CM II) occuring after the FxGxG motif (CM I) are designated D12 class N6-adenine MTases.; GO: 0009007 site-specific DNA-methyltransferase (adenine-specific) activity, 0032775 DNA methylation on adenine; PDB: 1Q0T_B 1YFJ_B 1Q0S_A 1YFL_B 1YF3_B 2DPM_A 2ORE_F 2G1P_B.
Probab=82.27 E-value=2 Score=39.75 Aligned_cols=57 Identities=18% Similarity=0.216 Sum_probs=40.7
Q ss_pred HHHHHHHHHcCCCCCCEEEEEcCcccHHHHHHHHcCCeEEEEeCCHHHHHHHHHHhh
Q 018261 43 LLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEAGKMVIAVELDSRMVLELQRRFQ 99 (359)
Q Consensus 43 ~v~~~iv~~~~~~~~~~VLDIGcGtG~lt~~La~~~~~V~avDid~~~i~~a~~~~~ 99 (359)
.++..|++.+......+++|+=||+|.++..+...+.+|+.-|+++..+...+..+.
T Consensus 7 ~l~~~I~~~ip~~~~~~~vepF~G~g~V~~~~~~~~~~vi~ND~~~~l~~~~~~~l~ 63 (260)
T PF02086_consen 7 KLAKWIIELIPKNKHKTYVEPFAGGGSVFLNLKQPGKRVIINDINPDLINFWKAVLK 63 (260)
T ss_dssp GGHHHHHHHS-S-S-SEEEETT-TTSHHHHCC---SSEEEEEES-HHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCCEEEEEecchhHHHHHhcccccceeeeechHHHHHHHHHHHh
Confidence 356677777753367899999999999998887778999999999999888875554
No 316
>KOG2920 consensus Predicted methyltransferase [General function prediction only]
Probab=82.21 E-value=1.4 Score=41.91 Aligned_cols=37 Identities=19% Similarity=0.186 Sum_probs=31.3
Q ss_pred CCCCEEEEEcCcccHHHHHHHHcC-CeEEEEeCCHHHH
Q 018261 55 KSTDVILEIGPGTGNLTKKLLEAG-KMVIAVELDSRMV 91 (359)
Q Consensus 55 ~~~~~VLDIGcGtG~lt~~La~~~-~~V~avDid~~~i 91 (359)
..+++|||+|||+|...+.....+ ..|...|.+...+
T Consensus 115 ~~~k~vLELgCg~~Lp~i~~~~~~~~~~~fqD~na~vl 152 (282)
T KOG2920|consen 115 FSGKRVLELGCGAALPGIFAFVKGAVSVHFQDFNAEVL 152 (282)
T ss_pred ecCceeEecCCcccccchhhhhhccceeeeEecchhhe
Confidence 468999999999999888877776 7889999887765
No 317
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=82.19 E-value=35 Score=30.99 Aligned_cols=74 Identities=18% Similarity=0.244 Sum_probs=48.4
Q ss_pred CCCEEEEEcCccc---HHHHHHHHcCCeEEEEeCCHHHHHHHHHHhhcCCCCCCeEEEEccccCCC------------CC
Q 018261 56 STDVILEIGPGTG---NLTKKLLEAGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTD------------LP 120 (359)
Q Consensus 56 ~~~~VLDIGcGtG---~lt~~La~~~~~V~avDid~~~i~~a~~~~~~~~~~~~v~~i~~D~~~~~------------l~ 120 (359)
.+.+||=.|++.| .++..|++.|.+|+.++.++..+..+.+.+...+ .++.++.+|+.+.. ++
T Consensus 10 ~~k~ilItGas~~IG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 87 (256)
T PRK06124 10 AGQVALVTGSARGLGFEIARALAGAGAHVLVNGRNAATLEAAVAALRAAG--GAAEALAFDIADEEAVAAAFARIDAEHG 87 (256)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHhcC--CceEEEEccCCCHHHHHHHHHHHHHhcC
Confidence 4678888886443 2334455568999999999876665555554333 26888999987532 12
Q ss_pred CCccccccccc
Q 018261 121 YFDICVANIPY 131 (359)
Q Consensus 121 ~fD~VvsNlPy 131 (359)
..|.+|.|.-+
T Consensus 88 ~id~vi~~ag~ 98 (256)
T PRK06124 88 RLDILVNNVGA 98 (256)
T ss_pred CCCEEEECCCC
Confidence 46778877544
No 318
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=82.01 E-value=32 Score=31.66 Aligned_cols=74 Identities=19% Similarity=0.231 Sum_probs=51.8
Q ss_pred CCCEEEEEcCccc---HHHHHHHHcCCeEEEEeCCHHHHHHHHHHhhcCCCCCCeEEEEccccCCC------------CC
Q 018261 56 STDVILEIGPGTG---NLTKKLLEAGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTD------------LP 120 (359)
Q Consensus 56 ~~~~VLDIGcGtG---~lt~~La~~~~~V~avDid~~~i~~a~~~~~~~~~~~~v~~i~~D~~~~~------------l~ 120 (359)
.+.++|=.|++.| .++..|++.+.+|+.++.++.-++.+.+.+...+ .++.++.+|+.+.. +.
T Consensus 9 ~~k~~lItGa~~~iG~~ia~~l~~~G~~vv~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 86 (265)
T PRK07097 9 KGKIALITGASYGIGFAIAKAYAKAGATIVFNDINQELVDKGLAAYRELG--IEAHGYVCDVTDEDGVQAMVSQIEKEVG 86 (265)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcC--CceEEEEcCCCCHHHHHHHHHHHHHhCC
Confidence 4578888888765 3556677778999999998877766666554433 26888899987532 13
Q ss_pred CCccccccccc
Q 018261 121 YFDICVANIPY 131 (359)
Q Consensus 121 ~fD~VvsNlPy 131 (359)
..|.+|.|..+
T Consensus 87 ~id~li~~ag~ 97 (265)
T PRK07097 87 VIDILVNNAGI 97 (265)
T ss_pred CCCEEEECCCC
Confidence 47888887654
No 319
>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=81.92 E-value=22 Score=32.58 Aligned_cols=72 Identities=21% Similarity=0.334 Sum_probs=46.1
Q ss_pred CCCEEEEEcCccc---HHHHHHHHcCCeEEEEeCCHHHHHHHHHHhhcCCCCCCeEEEEccccCCC------------CC
Q 018261 56 STDVILEIGPGTG---NLTKKLLEAGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTD------------LP 120 (359)
Q Consensus 56 ~~~~VLDIGcGtG---~lt~~La~~~~~V~avDid~~~i~~a~~~~~~~~~~~~v~~i~~D~~~~~------------l~ 120 (359)
.+.++|=.|++.| .++..|++.|.+|+.++.+.. +.+.+.....+ .++.++.+|+.+.. ++
T Consensus 7 ~~k~~lItGas~gIG~aia~~l~~~G~~vv~~~~~~~--~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~g 82 (251)
T PRK12481 7 NGKVAIITGCNTGLGQGMAIGLAKAGADIVGVGVAEA--PETQAQVEALG--RKFHFITADLIQQKDIDSIVSQAVEVMG 82 (251)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEecCchH--HHHHHHHHHcC--CeEEEEEeCCCCHHHHHHHHHHHHHHcC
Confidence 4678999997766 355566667899999876542 22333333222 36888899987642 23
Q ss_pred CCccccccccc
Q 018261 121 YFDICVANIPY 131 (359)
Q Consensus 121 ~fD~VvsNlPy 131 (359)
..|++|.|.-+
T Consensus 83 ~iD~lv~~ag~ 93 (251)
T PRK12481 83 HIDILINNAGI 93 (251)
T ss_pred CCCEEEECCCc
Confidence 57888887543
No 320
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=81.86 E-value=3.8 Score=40.91 Aligned_cols=57 Identities=21% Similarity=0.289 Sum_probs=40.7
Q ss_pred cCHHHHHHHHHHcCCCCCCEEEEEcCcccHHHHHHH-HcCCeEEEEeCCHHHHHHHHHHhhc
Q 018261 40 KNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLL-EAGKMVIAVELDSRMVLELQRRFQS 100 (359)
Q Consensus 40 ~d~~v~~~iv~~~~~~~~~~VLDIGcGtG~lt~~La-~~~~~V~avDid~~~i~~a~~~~~~ 100 (359)
.||.+- .+.+++.++++||-|..| |.....++ +..++|+|||++|.-+..++=++..
T Consensus 22 EDp~vD---~~aL~i~~~d~vl~ItSa-G~N~L~yL~~~P~~I~aVDlNp~Q~aLleLKlAa 79 (380)
T PF11899_consen 22 EDPRVD---MEALNIGPDDRVLTITSA-GCNALDYLLAGPKRIHAVDLNPAQNALLELKLAA 79 (380)
T ss_pred CCcHHH---HHHhCCCCCCeEEEEccC-CchHHHHHhcCCceEEEEeCCHHHHHHHHHHHHH
Confidence 455443 346778899999999876 44444444 4458999999999988877666543
No 321
>PRK08303 short chain dehydrogenase; Provisional
Probab=81.81 E-value=22 Score=33.97 Aligned_cols=72 Identities=24% Similarity=0.238 Sum_probs=46.7
Q ss_pred CCCEEEEEcCccc---HHHHHHHHcCCeEEEEeCCH----------HHHHHHHHHhhcCCCCCCeEEEEccccCCC----
Q 018261 56 STDVILEIGPGTG---NLTKKLLEAGKMVIAVELDS----------RMVLELQRRFQSTPYSNRLKVIQGDVLKTD---- 118 (359)
Q Consensus 56 ~~~~VLDIGcGtG---~lt~~La~~~~~V~avDid~----------~~i~~a~~~~~~~~~~~~v~~i~~D~~~~~---- 118 (359)
.+.++|=.|++.| .++..|++.|.+|+.++.+. +-++.+.+.+...+ .++.++.+|+.+..
T Consensus 7 ~~k~~lITGgs~GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~Dv~~~~~v~~ 84 (305)
T PRK08303 7 RGKVALVAGATRGAGRGIAVELGAAGATVYVTGRSTRARRSEYDRPETIEETAELVTAAG--GRGIAVQVDHLVPEQVRA 84 (305)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEecccccccccccccchHHHHHHHHHhcC--CceEEEEcCCCCHHHHHH
Confidence 4678999998766 35556666789999998763 23333434443332 25778889987642
Q ss_pred --------CCCCccccccc
Q 018261 119 --------LPYFDICVANI 129 (359)
Q Consensus 119 --------l~~fD~VvsNl 129 (359)
++..|++|.|.
T Consensus 85 ~~~~~~~~~g~iDilVnnA 103 (305)
T PRK08303 85 LVERIDREQGRLDILVNDI 103 (305)
T ss_pred HHHHHHHHcCCccEEEECC
Confidence 23578888886
No 322
>PRK05866 short chain dehydrogenase; Provisional
Probab=81.68 E-value=34 Score=32.39 Aligned_cols=73 Identities=19% Similarity=0.254 Sum_probs=49.2
Q ss_pred CCEEEEEcCccc---HHHHHHHHcCCeEEEEeCCHHHHHHHHHHhhcCCCCCCeEEEEccccCCC------------CCC
Q 018261 57 TDVILEIGPGTG---NLTKKLLEAGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTD------------LPY 121 (359)
Q Consensus 57 ~~~VLDIGcGtG---~lt~~La~~~~~V~avDid~~~i~~a~~~~~~~~~~~~v~~i~~D~~~~~------------l~~ 121 (359)
+.+||=.|++.| .++..|++.|.+|++++.++..++.+.+.+...+ .++.++.+|+.+.. ++.
T Consensus 40 ~k~vlItGasggIG~~la~~La~~G~~Vi~~~R~~~~l~~~~~~l~~~~--~~~~~~~~Dl~d~~~v~~~~~~~~~~~g~ 117 (293)
T PRK05866 40 GKRILLTGASSGIGEAAAEQFARRGATVVAVARREDLLDAVADRITRAG--GDAMAVPCDLSDLDAVDALVADVEKRIGG 117 (293)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 467888887554 2444556668999999999877766655554322 25778889987632 235
Q ss_pred Cccccccccc
Q 018261 122 FDICVANIPY 131 (359)
Q Consensus 122 fD~VvsNlPy 131 (359)
.|++|.|.-.
T Consensus 118 id~li~~AG~ 127 (293)
T PRK05866 118 VDILINNAGR 127 (293)
T ss_pred CCEEEECCCC
Confidence 6888877543
No 323
>PRK09072 short chain dehydrogenase; Provisional
Probab=81.42 E-value=38 Score=31.05 Aligned_cols=73 Identities=19% Similarity=0.302 Sum_probs=49.6
Q ss_pred CCCEEEEEcCccc---HHHHHHHHcCCeEEEEeCCHHHHHHHHHHhhcCCCCCCeEEEEccccCCC-----------CCC
Q 018261 56 STDVILEIGPGTG---NLTKKLLEAGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTD-----------LPY 121 (359)
Q Consensus 56 ~~~~VLDIGcGtG---~lt~~La~~~~~V~avDid~~~i~~a~~~~~~~~~~~~v~~i~~D~~~~~-----------l~~ 121 (359)
++.+||=.|++.| .++..|++.|.+|++++.++.-+..+...+.. + .++.++.+|+.+.. +..
T Consensus 4 ~~~~vlItG~s~~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~-~--~~~~~~~~D~~d~~~~~~~~~~~~~~~~ 80 (263)
T PRK09072 4 KDKRVLLTGASGGIGQALAEALAAAGARLLLVGRNAEKLEALAARLPY-P--GRHRWVVADLTSEAGREAVLARAREMGG 80 (263)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHhc-C--CceEEEEccCCCHHHHHHHHHHHHhcCC
Confidence 3467888887654 25556666789999999998777666555422 2 37888999987643 134
Q ss_pred Cccccccccc
Q 018261 122 FDICVANIPY 131 (359)
Q Consensus 122 fD~VvsNlPy 131 (359)
.|.+|.|..+
T Consensus 81 id~lv~~ag~ 90 (263)
T PRK09072 81 INVLINNAGV 90 (263)
T ss_pred CCEEEECCCC
Confidence 6888877654
No 324
>PRK07109 short chain dehydrogenase; Provisional
Probab=81.23 E-value=22 Score=34.51 Aligned_cols=74 Identities=16% Similarity=0.223 Sum_probs=50.3
Q ss_pred CCCEEEEEcCcccH---HHHHHHHcCCeEEEEeCCHHHHHHHHHHhhcCCCCCCeEEEEccccCCC------------CC
Q 018261 56 STDVILEIGPGTGN---LTKKLLEAGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTD------------LP 120 (359)
Q Consensus 56 ~~~~VLDIGcGtG~---lt~~La~~~~~V~avDid~~~i~~a~~~~~~~~~~~~v~~i~~D~~~~~------------l~ 120 (359)
.+.+||=.|++.|. ++..|++.|.+|+.++.++.-++.+.+.+...+ .++.++.+|+.+.. ++
T Consensus 7 ~~k~vlITGas~gIG~~la~~la~~G~~Vvl~~R~~~~l~~~~~~l~~~g--~~~~~v~~Dv~d~~~v~~~~~~~~~~~g 84 (334)
T PRK07109 7 GRQVVVITGASAGVGRATARAFARRGAKVVLLARGEEGLEALAAEIRAAG--GEALAVVADVADAEAVQAAADRAEEELG 84 (334)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcC--CcEEEEEecCCCHHHHHHHHHHHHHHCC
Confidence 45678888865542 444556678999999999887776666554433 36888899987632 23
Q ss_pred CCccccccccc
Q 018261 121 YFDICVANIPY 131 (359)
Q Consensus 121 ~fD~VvsNlPy 131 (359)
.+|++|.|.-+
T Consensus 85 ~iD~lInnAg~ 95 (334)
T PRK07109 85 PIDTWVNNAMV 95 (334)
T ss_pred CCCEEEECCCc
Confidence 57888877644
No 325
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=81.09 E-value=4.4 Score=39.53 Aligned_cols=50 Identities=24% Similarity=0.368 Sum_probs=41.6
Q ss_pred HHHHHcCCCCCCEEEEEcCcc-cHHHHHHHHc--CCeEEEEeCCHHHHHHHHH
Q 018261 47 SIVQKAGIKSTDVILEIGPGT-GNLTKKLLEA--GKMVIAVELDSRMVLELQR 96 (359)
Q Consensus 47 ~iv~~~~~~~~~~VLDIGcGt-G~lt~~La~~--~~~V~avDid~~~i~~a~~ 96 (359)
......+++.+.+||=+|+|+ |.+|...|+. +.+|+.+|+++..++.|++
T Consensus 160 HAcr~~~vk~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~ 212 (354)
T KOG0024|consen 160 HACRRAGVKKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKK 212 (354)
T ss_pred hhhhhcCcccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHH
Confidence 344567888999999999996 6667666766 4799999999999999998
No 326
>PRK08265 short chain dehydrogenase; Provisional
Probab=80.82 E-value=33 Score=31.55 Aligned_cols=71 Identities=21% Similarity=0.247 Sum_probs=47.0
Q ss_pred CCCEEEEEcCccc---HHHHHHHHcCCeEEEEeCCHHHHHHHHHHhhcCCCCCCeEEEEccccCCC------------CC
Q 018261 56 STDVILEIGPGTG---NLTKKLLEAGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTD------------LP 120 (359)
Q Consensus 56 ~~~~VLDIGcGtG---~lt~~La~~~~~V~avDid~~~i~~a~~~~~~~~~~~~v~~i~~D~~~~~------------l~ 120 (359)
.+.++|=.|++.| .++..|++.|.+|+.++.++.-++.+.+... .++.++.+|+.+.. +.
T Consensus 5 ~~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~-----~~~~~~~~Dl~~~~~~~~~~~~~~~~~g 79 (261)
T PRK08265 5 AGKVAIVTGGATLIGAAVARALVAAGARVAIVDIDADNGAAVAASLG-----ERARFIATDITDDAAIERAVATVVARFG 79 (261)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhC-----CeeEEEEecCCCHHHHHHHHHHHHHHhC
Confidence 3568888886544 2455566668999999998765554444331 26788899987642 12
Q ss_pred CCccccccccc
Q 018261 121 YFDICVANIPY 131 (359)
Q Consensus 121 ~fD~VvsNlPy 131 (359)
..|.+|.|..+
T Consensus 80 ~id~lv~~ag~ 90 (261)
T PRK08265 80 RVDILVNLACT 90 (261)
T ss_pred CCCEEEECCCC
Confidence 46888877543
No 327
>PRK09242 tropinone reductase; Provisional
Probab=80.56 E-value=44 Score=30.43 Aligned_cols=76 Identities=17% Similarity=0.220 Sum_probs=50.6
Q ss_pred CCCEEEEEcCccc---HHHHHHHHcCCeEEEEeCCHHHHHHHHHHhhcCCCCCCeEEEEccccCCC------------CC
Q 018261 56 STDVILEIGPGTG---NLTKKLLEAGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTD------------LP 120 (359)
Q Consensus 56 ~~~~VLDIGcGtG---~lt~~La~~~~~V~avDid~~~i~~a~~~~~~~~~~~~v~~i~~D~~~~~------------l~ 120 (359)
.++++|=.|++.| .++..|++.|.+|+.++.+++-++.+.+.+.......++.++.+|+.+.. ++
T Consensus 8 ~~k~~lItGa~~gIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g 87 (257)
T PRK09242 8 DGQTALITGASKGIGLAIAREFLGLGADVLIVARDADALAQARDELAEEFPEREVHGLAADVSDDEDRRAILDWVEDHWD 87 (257)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhCCCCeEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 4678888888554 24455566689999999988777666655543211136788899987532 23
Q ss_pred CCccccccccc
Q 018261 121 YFDICVANIPY 131 (359)
Q Consensus 121 ~fD~VvsNlPy 131 (359)
..|.+|.|.-+
T Consensus 88 ~id~li~~ag~ 98 (257)
T PRK09242 88 GLHILVNNAGG 98 (257)
T ss_pred CCCEEEECCCC
Confidence 57888877654
No 328
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=79.94 E-value=6.3 Score=39.46 Aligned_cols=79 Identities=19% Similarity=0.277 Sum_probs=57.4
Q ss_pred CEEEEEcCcccHHHH----HHHHcC-CeEEEEeCCHHHHHHHHHHhhcCCCCCCeEEEEccccCCC-----CCCCccccc
Q 018261 58 DVILEIGPGTGNLTK----KLLEAG-KMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTD-----LPYFDICVA 127 (359)
Q Consensus 58 ~~VLDIGcGtG~lt~----~La~~~-~~V~avDid~~~i~~a~~~~~~~~~~~~v~~i~~D~~~~~-----l~~fD~Vvs 127 (359)
.+||=|||| ..+. .|++.+ .+|+..|.++..+..+...... +++.+.-|+.+.+ +..+|+|++
T Consensus 2 ~~ilviGaG--~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~~-----~v~~~~vD~~d~~al~~li~~~d~VIn 74 (389)
T COG1748 2 MKILVIGAG--GVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIGG-----KVEALQVDAADVDALVALIKDFDLVIN 74 (389)
T ss_pred CcEEEECCc--hhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhccc-----cceeEEecccChHHHHHHHhcCCEEEE
Confidence 468889995 3333 334455 7999999998887777665422 6888888988753 336799999
Q ss_pred ccccccchHHHHHHHh
Q 018261 128 NIPYQISSPLTFKLLF 143 (359)
Q Consensus 128 NlPy~i~s~ii~~ll~ 143 (359)
-+|++....++...++
T Consensus 75 ~~p~~~~~~i~ka~i~ 90 (389)
T COG1748 75 AAPPFVDLTILKACIK 90 (389)
T ss_pred eCCchhhHHHHHHHHH
Confidence 9999888777666654
No 329
>PRK13699 putative methylase; Provisional
Probab=79.92 E-value=2.1 Score=39.59 Aligned_cols=27 Identities=19% Similarity=0.463 Sum_probs=21.4
Q ss_pred eEEEEccccCC--CC--CCCccccccccccc
Q 018261 107 LKVIQGDVLKT--DL--PYFDICVANIPYQI 133 (359)
Q Consensus 107 v~~i~~D~~~~--~l--~~fD~VvsNlPy~i 133 (359)
.+++++|.+++ .+ .++|+||..+||.+
T Consensus 2 ~~l~~gD~le~l~~lpd~SVDLIiTDPPY~i 32 (227)
T PRK13699 2 SRFILGNCIDVMARFPDNAVDFILTDPPYLV 32 (227)
T ss_pred CeEEechHHHHHHhCCccccceEEeCCCccc
Confidence 36789998764 33 47999999999986
No 330
>COG2933 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=79.73 E-value=3.7 Score=38.95 Aligned_cols=68 Identities=18% Similarity=0.225 Sum_probs=53.1
Q ss_pred CCCCCEEEEEcCcccHHHHHHHHcCCeEEEEeCCHHHHHHHHHHhhcCCCCCCeEEEEccccCCCC-C-CCccccccc
Q 018261 54 IKSTDVILEIGPGTGNLTKKLLEAGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTDL-P-YFDICVANI 129 (359)
Q Consensus 54 ~~~~~~VLDIGcGtG~lt~~La~~~~~V~avDid~~~i~~a~~~~~~~~~~~~v~~i~~D~~~~~l-~-~fD~VvsNl 129 (359)
+.++....|+|+-+|..|..|.+++..|++||--+-+ +.+-..+ .++-...|..++.. . ..|-.||.+
T Consensus 209 L~~~M~avDLGAcPGGWTyqLVkr~m~V~aVDng~ma-----~sL~dtg---~v~h~r~DGfk~~P~r~~idWmVCDm 278 (358)
T COG2933 209 LAPGMWAVDLGACPGGWTYQLVKRNMRVYAVDNGPMA-----QSLMDTG---QVTHLREDGFKFRPTRSNIDWMVCDM 278 (358)
T ss_pred hcCCceeeecccCCCccchhhhhcceEEEEeccchhh-----hhhhccc---ceeeeeccCcccccCCCCCceEEeeh
Confidence 4578899999999999999999999999999976532 2233333 78888899888765 2 578788765
No 331
>PRK06125 short chain dehydrogenase; Provisional
Probab=79.24 E-value=47 Score=30.29 Aligned_cols=74 Identities=18% Similarity=0.183 Sum_probs=48.3
Q ss_pred CCCEEEEEcCccc---HHHHHHHHcCCeEEEEeCCHHHHHHHHHHhhcCCCCCCeEEEEccccCCC--------CCCCcc
Q 018261 56 STDVILEIGPGTG---NLTKKLLEAGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTD--------LPYFDI 124 (359)
Q Consensus 56 ~~~~VLDIGcGtG---~lt~~La~~~~~V~avDid~~~i~~a~~~~~~~~~~~~v~~i~~D~~~~~--------l~~fD~ 124 (359)
.+.++|=.|++.| .++..|++.|.+|++++.++...+.+.+.+.... ..++.++.+|+.+.. .+..|.
T Consensus 6 ~~k~vlItG~~~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~~D~~~~~~~~~~~~~~g~id~ 84 (259)
T PRK06125 6 AGKRVLITGASKGIGAAAAEAFAAEGCHLHLVARDADALEALAADLRAAH-GVDVAVHALDLSSPEAREQLAAEAGDIDI 84 (259)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhc-CCceEEEEecCCCHHHHHHHHHHhCCCCE
Confidence 3578888887544 2334455668899999999887766655554321 126788888886532 235788
Q ss_pred cccccc
Q 018261 125 CVANIP 130 (359)
Q Consensus 125 VvsNlP 130 (359)
+|.|.-
T Consensus 85 lv~~ag 90 (259)
T PRK06125 85 LVNNAG 90 (259)
T ss_pred EEECCC
Confidence 877753
No 332
>PRK06139 short chain dehydrogenase; Provisional
Probab=79.02 E-value=36 Score=33.00 Aligned_cols=74 Identities=16% Similarity=0.255 Sum_probs=51.0
Q ss_pred CCCEEEEEcCccc---HHHHHHHHcCCeEEEEeCCHHHHHHHHHHhhcCCCCCCeEEEEccccCCC------------CC
Q 018261 56 STDVILEIGPGTG---NLTKKLLEAGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTD------------LP 120 (359)
Q Consensus 56 ~~~~VLDIGcGtG---~lt~~La~~~~~V~avDid~~~i~~a~~~~~~~~~~~~v~~i~~D~~~~~------------l~ 120 (359)
.+.+||=.|++.| .++..|++.|.+|+.++.++..++.+.+.+...+ .++.++..|+.+.. +.
T Consensus 6 ~~k~vlITGAs~GIG~aia~~la~~G~~Vvl~~R~~~~l~~~~~~~~~~g--~~~~~~~~Dv~d~~~v~~~~~~~~~~~g 83 (330)
T PRK06139 6 HGAVVVITGASSGIGQATAEAFARRGARLVLAARDEEALQAVAEECRALG--AEVLVVPTDVTDADQVKALATQAASFGG 83 (330)
T ss_pred CCCEEEEcCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC--CcEEEEEeeCCCHHHHHHHHHHHHHhcC
Confidence 4568888887554 2445566678999999999888777666655443 26778888887532 13
Q ss_pred CCccccccccc
Q 018261 121 YFDICVANIPY 131 (359)
Q Consensus 121 ~fD~VvsNlPy 131 (359)
.+|++|.|.-+
T Consensus 84 ~iD~lVnnAG~ 94 (330)
T PRK06139 84 RIDVWVNNVGV 94 (330)
T ss_pred CCCEEEECCCc
Confidence 57888888643
No 333
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=78.22 E-value=6.2 Score=38.73 Aligned_cols=65 Identities=20% Similarity=0.327 Sum_probs=45.5
Q ss_pred CCcccccCHHHHH--HHHHHcCCCCCCEEEEEcCcc-cHHHHHHHHc-C-CeEEEEeCCHHHHHHHHHHh
Q 018261 34 KGQHILKNPLLVE--SIVQKAGIKSTDVILEIGPGT-GNLTKKLLEA-G-KMVIAVELDSRMVLELQRRF 98 (359)
Q Consensus 34 ~GQ~fl~d~~v~~--~iv~~~~~~~~~~VLDIGcGt-G~lt~~La~~-~-~~V~avDid~~~i~~a~~~~ 98 (359)
...-+|.++--+. ..+......++++|+=+|||+ |.++..+++. + .+|+++|.++.-++.|++..
T Consensus 144 ~~~aal~epla~~~~~~a~~~~~~~~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~ 213 (350)
T COG1063 144 EEAAALTEPLATAYHGHAERAAVRPGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAG 213 (350)
T ss_pred hhhhhhcChhhhhhhhhhhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhC
Confidence 3334555554444 323344445556999999996 6677777776 3 78999999999999998854
No 334
>PRK07831 short chain dehydrogenase; Provisional
Probab=78.21 E-value=53 Score=30.01 Aligned_cols=75 Identities=23% Similarity=0.340 Sum_probs=48.7
Q ss_pred CCCEEEEEcC-c--cc-HHHHHHHHcCCeEEEEeCCHHHHHHHHHHhhc-CCCCCCeEEEEccccCCC------------
Q 018261 56 STDVILEIGP-G--TG-NLTKKLLEAGKMVIAVELDSRMVLELQRRFQS-TPYSNRLKVIQGDVLKTD------------ 118 (359)
Q Consensus 56 ~~~~VLDIGc-G--tG-~lt~~La~~~~~V~avDid~~~i~~a~~~~~~-~~~~~~v~~i~~D~~~~~------------ 118 (359)
.+.++|=.|. | .| .++..|++.|.+|+.++.++.-++.+.+.+.. .+ ..++.++.+|+.+..
T Consensus 16 ~~k~vlItG~sg~gIG~~ia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 94 (262)
T PRK07831 16 AGKVVLVTAAAGTGIGSATARRALEEGARVVISDIHERRLGETADELAAELG-LGRVEAVVCDVTSEAQVDALIDAAVER 94 (262)
T ss_pred CCCEEEEECCCcccHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHhcC-CceEEEEEccCCCHHHHHHHHHHHHHH
Confidence 4567888885 3 33 35556667789999999888766666555433 11 126788899987532
Q ss_pred CCCCccccccccc
Q 018261 119 LPYFDICVANIPY 131 (359)
Q Consensus 119 l~~fD~VvsNlPy 131 (359)
++..|++|.|.-+
T Consensus 95 ~g~id~li~~ag~ 107 (262)
T PRK07831 95 LGRLDVLVNNAGL 107 (262)
T ss_pred cCCCCEEEECCCC
Confidence 1356888877654
No 335
>PRK08085 gluconate 5-dehydrogenase; Provisional
Probab=78.13 E-value=54 Score=29.78 Aligned_cols=74 Identities=16% Similarity=0.179 Sum_probs=48.9
Q ss_pred CCCEEEEEcCccc---HHHHHHHHcCCeEEEEeCCHHHHHHHHHHhhcCCCCCCeEEEEccccCCC------------CC
Q 018261 56 STDVILEIGPGTG---NLTKKLLEAGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTD------------LP 120 (359)
Q Consensus 56 ~~~~VLDIGcGtG---~lt~~La~~~~~V~avDid~~~i~~a~~~~~~~~~~~~v~~i~~D~~~~~------------l~ 120 (359)
.+.++|=.|.+.| .++..|++.|.+|+.++.++..+..+.+.+...+ .++.++.+|+.+.. ++
T Consensus 8 ~~k~~lItGas~giG~~ia~~L~~~G~~vvl~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 85 (254)
T PRK08085 8 AGKNILITGSAQGIGFLLATGLAEYGAEIIINDITAERAELAVAKLRQEG--IKAHAAPFNVTHKQEVEAAIEHIEKDIG 85 (254)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHHHhcC--CeEEEEecCCCCHHHHHHHHHHHHHhcC
Confidence 4567888886554 2445556668999999998776666555544322 25777888886532 23
Q ss_pred CCccccccccc
Q 018261 121 YFDICVANIPY 131 (359)
Q Consensus 121 ~fD~VvsNlPy 131 (359)
.+|.+|.|..+
T Consensus 86 ~id~vi~~ag~ 96 (254)
T PRK08085 86 PIDVLINNAGI 96 (254)
T ss_pred CCCEEEECCCc
Confidence 47888887654
No 336
>PRK07478 short chain dehydrogenase; Provisional
Probab=78.04 E-value=49 Score=30.01 Aligned_cols=74 Identities=18% Similarity=0.210 Sum_probs=50.3
Q ss_pred CCCEEEEEcCccc---HHHHHHHHcCCeEEEEeCCHHHHHHHHHHhhcCCCCCCeEEEEccccCCC------------CC
Q 018261 56 STDVILEIGPGTG---NLTKKLLEAGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTD------------LP 120 (359)
Q Consensus 56 ~~~~VLDIGcGtG---~lt~~La~~~~~V~avDid~~~i~~a~~~~~~~~~~~~v~~i~~D~~~~~------------l~ 120 (359)
.+.++|=.|++.| .++..|++.|.+|+.++.++.-++.+.+.+...+ .++.++.+|+.+.. +.
T Consensus 5 ~~k~~lItGas~giG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 82 (254)
T PRK07478 5 NGKVAIITGASSGIGRAAAKLFAREGAKVVVGARRQAELDQLVAEIRAEG--GEAVALAGDVRDEAYAKALVALAVERFG 82 (254)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEcCCCCHHHHHHHHHHHHHhcC
Confidence 3567887887654 2455666678999999998877766666554433 36788889987632 22
Q ss_pred CCccccccccc
Q 018261 121 YFDICVANIPY 131 (359)
Q Consensus 121 ~fD~VvsNlPy 131 (359)
..|.+|.|..+
T Consensus 83 ~id~li~~ag~ 93 (254)
T PRK07478 83 GLDIAFNNAGT 93 (254)
T ss_pred CCCEEEECCCC
Confidence 57888877643
No 337
>PRK07454 short chain dehydrogenase; Provisional
Probab=77.48 E-value=54 Score=29.45 Aligned_cols=73 Identities=16% Similarity=0.139 Sum_probs=48.1
Q ss_pred CCCEEEEEcCcccHHH----HHHHHcCCeEEEEeCCHHHHHHHHHHhhcCCCCCCeEEEEccccCCC------------C
Q 018261 56 STDVILEIGPGTGNLT----KKLLEAGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTD------------L 119 (359)
Q Consensus 56 ~~~~VLDIGcGtG~lt----~~La~~~~~V~avDid~~~i~~a~~~~~~~~~~~~v~~i~~D~~~~~------------l 119 (359)
...++|=.|+ +|.++ ..|++.+.+|++++.++.-...+.+.+...+ .++.++.+|+.+.. +
T Consensus 5 ~~k~vlItG~-sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~ 81 (241)
T PRK07454 5 SMPRALITGA-SSGIGKATALAFAKAGWDLALVARSQDALEALAAELRSTG--VKAAAYSIDLSNPEAIAPGIAELLEQF 81 (241)
T ss_pred CCCEEEEeCC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhCC--CcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence 3467888885 45444 4555568899999999876665555443322 36888999987643 1
Q ss_pred CCCccccccccc
Q 018261 120 PYFDICVANIPY 131 (359)
Q Consensus 120 ~~fD~VvsNlPy 131 (359)
+..|.+|.|.-+
T Consensus 82 ~~id~lv~~ag~ 93 (241)
T PRK07454 82 GCPDVLINNAGM 93 (241)
T ss_pred CCCCEEEECCCc
Confidence 246888877644
No 338
>PRK05876 short chain dehydrogenase; Provisional
Probab=77.35 E-value=54 Score=30.58 Aligned_cols=74 Identities=14% Similarity=0.159 Sum_probs=49.5
Q ss_pred CCCEEEEEcCccc---HHHHHHHHcCCeEEEEeCCHHHHHHHHHHhhcCCCCCCeEEEEccccCCC------------CC
Q 018261 56 STDVILEIGPGTG---NLTKKLLEAGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTD------------LP 120 (359)
Q Consensus 56 ~~~~VLDIGcGtG---~lt~~La~~~~~V~avDid~~~i~~a~~~~~~~~~~~~v~~i~~D~~~~~------------l~ 120 (359)
.+.++|=.|++.| .+...|++.|.+|+.++.++.-++.+.+.+...+ .++.++.+|+.+.. ++
T Consensus 5 ~~k~vlVTGas~gIG~ala~~La~~G~~Vv~~~r~~~~l~~~~~~l~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~~~g 82 (275)
T PRK05876 5 PGRGAVITGGASGIGLATGTEFARRGARVVLGDVDKPGLRQAVNHLRAEG--FDVHGVMCDVRHREEVTHLADEAFRLLG 82 (275)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CeEEEEeCCCCCHHHHHHHHHHHHHHcC
Confidence 4567888887655 2445566668999999999876666555554332 25778889987632 12
Q ss_pred CCccccccccc
Q 018261 121 YFDICVANIPY 131 (359)
Q Consensus 121 ~fD~VvsNlPy 131 (359)
..|++|.|.-+
T Consensus 83 ~id~li~nAg~ 93 (275)
T PRK05876 83 HVDVVFSNAGI 93 (275)
T ss_pred CCCEEEECCCc
Confidence 46888887654
No 339
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=76.11 E-value=8.8 Score=37.90 Aligned_cols=48 Identities=21% Similarity=0.258 Sum_probs=39.7
Q ss_pred HHcCCCCCCEEEEEcCcc-cHHHHHHHHc-CC-eEEEEeCCHHHHHHHHHH
Q 018261 50 QKAGIKSTDVILEIGPGT-GNLTKKLLEA-GK-MVIAVELDSRMVLELQRR 97 (359)
Q Consensus 50 ~~~~~~~~~~VLDIGcGt-G~lt~~La~~-~~-~V~avDid~~~i~~a~~~ 97 (359)
..+.+.++.+||.+|||. |.++..+++. +. +|++++.++...+.+++.
T Consensus 178 ~~~~~~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~ 228 (386)
T cd08283 178 ELAEVKPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSH 228 (386)
T ss_pred hhccCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHc
Confidence 345667888999999988 8888888876 54 699999999998888875
No 340
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=75.50 E-value=19 Score=35.73 Aligned_cols=81 Identities=16% Similarity=0.162 Sum_probs=59.4
Q ss_pred CCEEEEEcCcccHHHHHHHHc-CC-eEEEEeCCHHHHHHHHHHhhcCCCCCCeEEEEccccCCCC---CCCccccccccc
Q 018261 57 TDVILEIGPGTGNLTKKLLEA-GK-MVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTDL---PYFDICVANIPY 131 (359)
Q Consensus 57 ~~~VLDIGcGtG~lt~~La~~-~~-~V~avDid~~~i~~a~~~~~~~~~~~~v~~i~~D~~~~~l---~~fD~VvsNlPy 131 (359)
..+|+|.=+|||.-++..+.. +. +|+.-|++|.+++.+++|+..+.. .+..+++.|+..+-. ..||+|=. =||
T Consensus 53 ~~~v~DalsatGiRgIRya~E~~~~~v~lNDisp~Avelik~Nv~~N~~-~~~~v~n~DAN~lm~~~~~~fd~IDi-DPF 130 (380)
T COG1867 53 PKRVLDALSATGIRGIRYAVETGVVKVVLNDISPKAVELIKENVRLNSG-EDAEVINKDANALLHELHRAFDVIDI-DPF 130 (380)
T ss_pred CeEEeecccccchhHhhhhhhcCccEEEEccCCHHHHHHHHHHHHhcCc-ccceeecchHHHHHHhcCCCccEEec-CCC
Confidence 679999999999999888865 44 899999999999999999988732 256777778754321 25665422 356
Q ss_pred ccchHHHH
Q 018261 132 QISSPLTF 139 (359)
Q Consensus 132 ~i~s~ii~ 139 (359)
.-..|.+.
T Consensus 131 GSPaPFlD 138 (380)
T COG1867 131 GSPAPFLD 138 (380)
T ss_pred CCCchHHH
Confidence 65555543
No 341
>PRK08340 glucose-1-dehydrogenase; Provisional
Probab=74.87 E-value=12 Score=34.34 Aligned_cols=69 Identities=19% Similarity=0.270 Sum_probs=46.9
Q ss_pred EEEEEcCccc---HHHHHHHHcCCeEEEEeCCHHHHHHHHHHhhcCCCCCCeEEEEccccCCC------------CCCCc
Q 018261 59 VILEIGPGTG---NLTKKLLEAGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTD------------LPYFD 123 (359)
Q Consensus 59 ~VLDIGcGtG---~lt~~La~~~~~V~avDid~~~i~~a~~~~~~~~~~~~v~~i~~D~~~~~------------l~~fD 123 (359)
+||=.|.+.| .++..|++.|++|+.++.++..++.+.+.+...+ ++.++.+|+.+.. +...|
T Consensus 2 ~vlItGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~---~~~~~~~Dv~d~~~~~~~~~~~~~~~g~id 78 (259)
T PRK08340 2 NVLVTASSRGIGFNVARELLKKGARVVISSRNEENLEKALKELKEYG---EVYAVKADLSDKDDLKNLVKEAWELLGGID 78 (259)
T ss_pred eEEEEcCCcHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcC---CceEEEcCCCCHHHHHHHHHHHHHhcCCCC
Confidence 4666776554 2455566678999999999887776666554433 6778889986532 23578
Q ss_pred ccccccc
Q 018261 124 ICVANIP 130 (359)
Q Consensus 124 ~VvsNlP 130 (359)
++|.|.-
T Consensus 79 ~li~naG 85 (259)
T PRK08340 79 ALVWNAG 85 (259)
T ss_pred EEEECCC
Confidence 8887754
No 342
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=74.82 E-value=66 Score=29.18 Aligned_cols=74 Identities=22% Similarity=0.186 Sum_probs=49.2
Q ss_pred CCCEEEEEcCcccHHHH----HHHHcCCeEEEEeCCHHHHHHHHHHhhcCCCCCCeEEEEccccCCC------------C
Q 018261 56 STDVILEIGPGTGNLTK----KLLEAGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTD------------L 119 (359)
Q Consensus 56 ~~~~VLDIGcGtG~lt~----~La~~~~~V~avDid~~~i~~a~~~~~~~~~~~~v~~i~~D~~~~~------------l 119 (359)
.+.+||=.|. +|.++. .|++.|.+|+.++.++..+..+.+.+...+ .++.++.+|+.+.. +
T Consensus 9 ~~k~vlItGa-~g~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~ 85 (255)
T PRK07523 9 TGRRALVTGS-SQGIGYALAEGLAQAGAEVILNGRDPAKLAAAAESLKGQG--LSAHALAFDVTDHDAVRAAIDAFEAEI 85 (255)
T ss_pred CCCEEEEECC-cchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcC--ceEEEEEccCCCHHHHHHHHHHHHHhc
Confidence 4678998885 454444 445568999999999877666555554432 25778888987632 1
Q ss_pred CCCcccccccccc
Q 018261 120 PYFDICVANIPYQ 132 (359)
Q Consensus 120 ~~fD~VvsNlPy~ 132 (359)
...|.+|.|....
T Consensus 86 ~~~d~li~~ag~~ 98 (255)
T PRK07523 86 GPIDILVNNAGMQ 98 (255)
T ss_pred CCCCEEEECCCCC
Confidence 2468888776543
No 343
>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=74.74 E-value=54 Score=29.86 Aligned_cols=73 Identities=23% Similarity=0.278 Sum_probs=47.7
Q ss_pred CCCEEEEEcCccc---HHHHHHHHcCCeEEEEeCCHHHHHHHHHHhhcCCCCCCeEEEEccccCCC------------CC
Q 018261 56 STDVILEIGPGTG---NLTKKLLEAGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTD------------LP 120 (359)
Q Consensus 56 ~~~~VLDIGcGtG---~lt~~La~~~~~V~avDid~~~i~~a~~~~~~~~~~~~v~~i~~D~~~~~------------l~ 120 (359)
.+.+||=.|++.| .+...|++.|.+|+.++.+.. .+.+.+.+...+ .++.++.+|+.+.. ++
T Consensus 14 ~~k~vlItGas~gIG~~ia~~l~~~G~~v~~~~~~~~-~~~~~~~~~~~~--~~~~~~~~D~~~~~~i~~~~~~~~~~~g 90 (258)
T PRK06935 14 DGKVAIVTGGNTGLGQGYAVALAKAGADIIITTHGTN-WDETRRLIEKEG--RKVTFVQVDLTKPESAEKVVKEALEEFG 90 (258)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCcH-HHHHHHHHHhcC--CceEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 4678999998765 355556677899999988743 344444443322 36888899987632 12
Q ss_pred CCccccccccc
Q 018261 121 YFDICVANIPY 131 (359)
Q Consensus 121 ~fD~VvsNlPy 131 (359)
..|.+|.|..+
T Consensus 91 ~id~li~~ag~ 101 (258)
T PRK06935 91 KIDILVNNAGT 101 (258)
T ss_pred CCCEEEECCCC
Confidence 46888877543
No 344
>PRK05854 short chain dehydrogenase; Provisional
Probab=74.24 E-value=15 Score=35.18 Aligned_cols=75 Identities=16% Similarity=0.098 Sum_probs=49.2
Q ss_pred CCCEEEEEcCcccH---HHHHHHHcCCeEEEEeCCHHHHHHHHHHhhcCCCCCCeEEEEccccCCC------------CC
Q 018261 56 STDVILEIGPGTGN---LTKKLLEAGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTD------------LP 120 (359)
Q Consensus 56 ~~~~VLDIGcGtG~---lt~~La~~~~~V~avDid~~~i~~a~~~~~~~~~~~~v~~i~~D~~~~~------------l~ 120 (359)
.+.++|=.|++.|. ++..|++.|.+|+.+..++.-.+.+.+.+....-..++.++.+|+.+.. .+
T Consensus 13 ~gk~~lITGas~GIG~~~a~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dl~d~~sv~~~~~~~~~~~~ 92 (313)
T PRK05854 13 SGKRAVVTGASDGLGLGLARRLAAAGAEVILPVRNRAKGEAAVAAIRTAVPDAKLSLRALDLSSLASVAALGEQLRAEGR 92 (313)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEecCCCHHHHHHHHHHHHHhCC
Confidence 45788888876652 5556666789999999887766555544432211126888999987643 13
Q ss_pred CCcccccccc
Q 018261 121 YFDICVANIP 130 (359)
Q Consensus 121 ~fD~VvsNlP 130 (359)
..|++|.|.-
T Consensus 93 ~iD~li~nAG 102 (313)
T PRK05854 93 PIHLLINNAG 102 (313)
T ss_pred CccEEEECCc
Confidence 4788887753
No 345
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=74.22 E-value=16 Score=38.48 Aligned_cols=79 Identities=22% Similarity=0.276 Sum_probs=50.3
Q ss_pred HcCCCCCCEEEEEcCcccHHHHH----HHHcCCeEEEEeCCHHHHHHHHHHhhcC-----C--CCCCeEEEEccccCCC-
Q 018261 51 KAGIKSTDVILEIGPGTGNLTKK----LLEAGKMVIAVELDSRMVLELQRRFQST-----P--YSNRLKVIQGDVLKTD- 118 (359)
Q Consensus 51 ~~~~~~~~~VLDIGcGtG~lt~~----La~~~~~V~avDid~~~i~~a~~~~~~~-----~--~~~~v~~i~~D~~~~~- 118 (359)
.++...+.+||=.|+ +|.++.. |++.|.+|+++..+..-+..+.+.+... + ...++.++.+|+.+..
T Consensus 74 ~~~~~~gKvVLVTGA-TGgIG~aLAr~LLk~G~~Vval~Rn~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLtD~es 152 (576)
T PLN03209 74 ELDTKDEDLAFVAGA-TGKVGSRTVRELLKLGFRVRAGVRSAQRAESLVQSVKQMKLDVEGTQPVEKLEIVECDLEKPDQ 152 (576)
T ss_pred ccccCCCCEEEEECC-CCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhhhhccccccccccCceEEEEecCCCHHH
Confidence 445556778888886 3545544 4455899999999887665544332211 1 0125889999998643
Q ss_pred ----CCCCcccccccc
Q 018261 119 ----LPYFDICVANIP 130 (359)
Q Consensus 119 ----l~~fD~VvsNlP 130 (359)
+...|+||++.-
T Consensus 153 I~~aLggiDiVVn~AG 168 (576)
T PLN03209 153 IGPALGNASVVICCIG 168 (576)
T ss_pred HHHHhcCCCEEEEccc
Confidence 345788888754
No 346
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=73.86 E-value=21 Score=32.75 Aligned_cols=65 Identities=28% Similarity=0.403 Sum_probs=43.5
Q ss_pred EEEEEcCcc--cHHHHHHHHcCCeEEEEeCCHHHHHHHHH-HhhcCCCCCCeEEEEccccCCC------CCCCccccccc
Q 018261 59 VILEIGPGT--GNLTKKLLEAGKMVIAVELDSRMVLELQR-RFQSTPYSNRLKVIQGDVLKTD------LPYFDICVANI 129 (359)
Q Consensus 59 ~VLDIGcGt--G~lt~~La~~~~~V~avDid~~~i~~a~~-~~~~~~~~~~v~~i~~D~~~~~------l~~fD~VvsNl 129 (359)
+++=||||. +.++..|.+.|..|++||.|+..+..... .. ...++++|..+.. ...+|.+++..
T Consensus 2 ~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~~~~~~~~~~~~-------~~~~v~gd~t~~~~L~~agi~~aD~vva~t 74 (225)
T COG0569 2 KIIIIGAGRVGRSVARELSEEGHNVVLIDRDEERVEEFLADEL-------DTHVVIGDATDEDVLEEAGIDDADAVVAAT 74 (225)
T ss_pred EEEEECCcHHHHHHHHHHHhCCCceEEEEcCHHHHHHHhhhhc-------ceEEEEecCCCHHHHHhcCCCcCCEEEEee
Confidence 456677774 23445556668999999999998776322 22 4778999987632 34678776644
Q ss_pred c
Q 018261 130 P 130 (359)
Q Consensus 130 P 130 (359)
.
T Consensus 75 ~ 75 (225)
T COG0569 75 G 75 (225)
T ss_pred C
Confidence 3
No 347
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=73.84 E-value=8.4 Score=38.75 Aligned_cols=83 Identities=20% Similarity=0.253 Sum_probs=53.3
Q ss_pred cCHHHHHHHHHHcCC--CCCCEEEEEcCcccHHHHHHH----HcCCeEEEEeCCHHHHHHHHHHhhcCCCCCCeEEEEcc
Q 018261 40 KNPLLVESIVQKAGI--KSTDVILEIGPGTGNLTKKLL----EAGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGD 113 (359)
Q Consensus 40 ~d~~v~~~iv~~~~~--~~~~~VLDIGcGtG~lt~~La----~~~~~V~avDid~~~i~~a~~~~~~~~~~~~v~~i~~D 113 (359)
.++.-+..+...+.. ....+|+=+|+ |.++..++ +.+..|+.+|.+++.++.+++... .+.++.+|
T Consensus 212 g~~~~l~~~~~~~~~~~~~~~~iiIiG~--G~~g~~l~~~L~~~~~~v~vid~~~~~~~~~~~~~~------~~~~i~gd 283 (453)
T PRK09496 212 GAREHIRAVMSEFGRLEKPVKRVMIVGG--GNIGYYLAKLLEKEGYSVKLIERDPERAEELAEELP------NTLVLHGD 283 (453)
T ss_pred eCHHHHHHHHHHhCccCCCCCEEEEECC--CHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHCC------CCeEEECC
Confidence 344455555554432 23467887777 55555544 347899999999999888777531 46789999
Q ss_pred ccCC------CCCCCcccccccc
Q 018261 114 VLKT------DLPYFDICVANIP 130 (359)
Q Consensus 114 ~~~~------~l~~fD~VvsNlP 130 (359)
+.+. ....+|.|++..+
T Consensus 284 ~~~~~~L~~~~~~~a~~vi~~~~ 306 (453)
T PRK09496 284 GTDQELLEEEGIDEADAFIALTN 306 (453)
T ss_pred CCCHHHHHhcCCccCCEEEECCC
Confidence 8653 2335777766443
No 348
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=73.00 E-value=5 Score=42.55 Aligned_cols=62 Identities=16% Similarity=0.173 Sum_probs=42.6
Q ss_pred CEEEEEcCcccHHHHHHH----HcCCeEEEEeCCHHHHHHHHHHhhcCCCCCCeEEEEccccCCC------CCCCccccc
Q 018261 58 DVILEIGPGTGNLTKKLL----EAGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTD------LPYFDICVA 127 (359)
Q Consensus 58 ~~VLDIGcGtG~lt~~La----~~~~~V~avDid~~~i~~a~~~~~~~~~~~~v~~i~~D~~~~~------l~~fD~Vvs 127 (359)
+.|+=+|+ |.+++.++ +.+..++.+|.|++.++.+++. ...++.||+.+.+ ....|.+++
T Consensus 401 ~~vII~G~--Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~--------g~~v~~GDat~~~~L~~agi~~A~~vv~ 470 (601)
T PRK03659 401 PQVIIVGF--GRFGQVIGRLLMANKMRITVLERDISAVNLMRKY--------GYKVYYGDATQLELLRAAGAEKAEAIVI 470 (601)
T ss_pred CCEEEecC--chHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhC--------CCeEEEeeCCCHHHHHhcCCccCCEEEE
Confidence 35555555 55555554 3478999999999999888652 4678999998743 335677766
Q ss_pred cc
Q 018261 128 NI 129 (359)
Q Consensus 128 Nl 129 (359)
..
T Consensus 471 ~~ 472 (601)
T PRK03659 471 TC 472 (601)
T ss_pred Ee
Confidence 44
No 349
>PRK08226 short chain dehydrogenase; Provisional
Probab=72.98 E-value=75 Score=28.94 Aligned_cols=73 Identities=16% Similarity=0.190 Sum_probs=45.4
Q ss_pred CCCEEEEEcCccc---HHHHHHHHcCCeEEEEeCCHHHHHHHHHHhhcCCCCCCeEEEEccccCCC------------CC
Q 018261 56 STDVILEIGPGTG---NLTKKLLEAGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTD------------LP 120 (359)
Q Consensus 56 ~~~~VLDIGcGtG---~lt~~La~~~~~V~avDid~~~i~~a~~~~~~~~~~~~v~~i~~D~~~~~------------l~ 120 (359)
.+.++|=.|+..| .++..|++.|.+|+.++.++...+.+.+..... .++.++.+|+.+.. ++
T Consensus 5 ~~~~~lItG~s~giG~~la~~l~~~G~~Vv~~~r~~~~~~~~~~~~~~~---~~~~~~~~Dl~~~~~v~~~~~~~~~~~~ 81 (263)
T PRK08226 5 TGKTALITGALQGIGEGIARVFARHGANLILLDISPEIEKLADELCGRG---HRCTAVVADVRDPASVAAAIKRAKEKEG 81 (263)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHHHhC---CceEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 4578888887543 244445556899999998876544443332211 26778889987632 12
Q ss_pred CCccccccccc
Q 018261 121 YFDICVANIPY 131 (359)
Q Consensus 121 ~fD~VvsNlPy 131 (359)
..|.+|.|.-+
T Consensus 82 ~id~vi~~ag~ 92 (263)
T PRK08226 82 RIDILVNNAGV 92 (263)
T ss_pred CCCEEEECCCc
Confidence 46777776543
No 350
>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.
Probab=72.53 E-value=21 Score=32.25 Aligned_cols=73 Identities=18% Similarity=0.311 Sum_probs=47.9
Q ss_pred CCEEEEEcCccc---HHHHHHHHcCCeEEEEeCCHHHHHHHHHHhhcCCCCCCeEEEEccccCCC------------CCC
Q 018261 57 TDVILEIGPGTG---NLTKKLLEAGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTD------------LPY 121 (359)
Q Consensus 57 ~~~VLDIGcGtG---~lt~~La~~~~~V~avDid~~~i~~a~~~~~~~~~~~~v~~i~~D~~~~~------------l~~ 121 (359)
+.++|=.|++.| .++..|++.+.+|+.++.++.....+...+...+ .++.++.+|+.+.. ++.
T Consensus 3 ~~~ilItGas~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~d~~~~~~~~~~~~~~~~~~~~ 80 (250)
T TIGR03206 3 DKTAIVTGGGGGIGGATCRRFAEEGAKVAVFDLNREAAEKVAADIRAKG--GNAQAFACDITDRDSVDTAVAAAEQALGP 80 (250)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHHHhcC--CcEEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence 567888886433 2344455568899999998877666655544332 36888999987532 124
Q ss_pred Cccccccccc
Q 018261 122 FDICVANIPY 131 (359)
Q Consensus 122 fD~VvsNlPy 131 (359)
.|++|.|..+
T Consensus 81 ~d~vi~~ag~ 90 (250)
T TIGR03206 81 VDVLVNNAGW 90 (250)
T ss_pred CCEEEECCCC
Confidence 6888877654
No 351
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=72.26 E-value=46 Score=33.12 Aligned_cols=41 Identities=20% Similarity=0.191 Sum_probs=28.4
Q ss_pred CCCCEEEEEcCcccHHHHHHHHc---CCeEEEEeCCHHHHHHHH
Q 018261 55 KSTDVILEIGPGTGNLTKKLLEA---GKMVIAVELDSRMVLELQ 95 (359)
Q Consensus 55 ~~~~~VLDIGcGtG~lt~~La~~---~~~V~avDid~~~i~~a~ 95 (359)
....+|||+|.|+|.-..++-.. -..++-+|.++.+-++..
T Consensus 112 fapqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~ 155 (484)
T COG5459 112 FAPQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGD 155 (484)
T ss_pred cCcchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHH
Confidence 34578999999999765554332 256788888887755543
No 352
>PRK08643 acetoin reductase; Validated
Probab=72.13 E-value=21 Score=32.48 Aligned_cols=73 Identities=22% Similarity=0.362 Sum_probs=47.5
Q ss_pred CEEEEEcCccc---HHHHHHHHcCCeEEEEeCCHHHHHHHHHHhhcCCCCCCeEEEEccccCCC------------CCCC
Q 018261 58 DVILEIGPGTG---NLTKKLLEAGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTD------------LPYF 122 (359)
Q Consensus 58 ~~VLDIGcGtG---~lt~~La~~~~~V~avDid~~~i~~a~~~~~~~~~~~~v~~i~~D~~~~~------------l~~f 122 (359)
.++|=+|+..| .++..|++.+.+|+.++.++...+.+...+...+ .++.++.+|+.+.. ++..
T Consensus 3 k~~lItGas~giG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~i 80 (256)
T PRK08643 3 KVALVTGAGQGIGFAIAKRLVEDGFKVAIVDYNEETAQAAADKLSKDG--GKAIAVKADVSDRDQVFAAVRQVVDTFGDL 80 (256)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CeEEEEECCCCCHHHHHHHHHHHHHHcCCC
Confidence 46777775544 2444555668999999998877666655554332 26778899987642 1246
Q ss_pred cccccccccc
Q 018261 123 DICVANIPYQ 132 (359)
Q Consensus 123 D~VvsNlPy~ 132 (359)
|.+|.|..+.
T Consensus 81 d~vi~~ag~~ 90 (256)
T PRK08643 81 NVVVNNAGVA 90 (256)
T ss_pred CEEEECCCCC
Confidence 8888876543
No 353
>PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional
Probab=71.83 E-value=79 Score=28.72 Aligned_cols=72 Identities=14% Similarity=0.272 Sum_probs=45.9
Q ss_pred CCCEEEEEcCccc---HHHHHHHHcCCeEEEEeCCHHHHHHHHHHhhcCCCCCCeEEEEccccCCC------------CC
Q 018261 56 STDVILEIGPGTG---NLTKKLLEAGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTD------------LP 120 (359)
Q Consensus 56 ~~~~VLDIGcGtG---~lt~~La~~~~~V~avDid~~~i~~a~~~~~~~~~~~~v~~i~~D~~~~~------------l~ 120 (359)
.+.++|=.|++.| .++..|++.|.+|+.++.++.. ..+.+.+...+ .++.++.+|+.+.. ++
T Consensus 7 ~~k~vlVtGas~gIG~~la~~l~~~G~~v~~~~r~~~~-~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 83 (260)
T PRK12823 7 AGKVVVVTGAAQGIGRGVALRAAAEGARVVLVDRSELV-HEVAAELRAAG--GEALALTADLETYAGAQAAMAAAVEAFG 83 (260)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCchHH-HHHHHHHHhcC--CeEEEEEEeCCCHHHHHHHHHHHHHHcC
Confidence 3567888887554 2555666678999999998653 33333333222 25778888987632 13
Q ss_pred CCcccccccc
Q 018261 121 YFDICVANIP 130 (359)
Q Consensus 121 ~fD~VvsNlP 130 (359)
.+|.+|.|.-
T Consensus 84 ~id~lv~nAg 93 (260)
T PRK12823 84 RIDVLINNVG 93 (260)
T ss_pred CCeEEEECCc
Confidence 4788888764
No 354
>PRK05872 short chain dehydrogenase; Provisional
Probab=70.85 E-value=20 Score=33.88 Aligned_cols=73 Identities=22% Similarity=0.363 Sum_probs=48.5
Q ss_pred CCCEEEEEcCccc---HHHHHHHHcCCeEEEEeCCHHHHHHHHHHhhcCCCCCCeEEEEccccCCC------------CC
Q 018261 56 STDVILEIGPGTG---NLTKKLLEAGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTD------------LP 120 (359)
Q Consensus 56 ~~~~VLDIGcGtG---~lt~~La~~~~~V~avDid~~~i~~a~~~~~~~~~~~~v~~i~~D~~~~~------------l~ 120 (359)
.+.+||=.|++.| .++..|++.|.+|+.++.++..++.+.+.+... ..+..+.+|+.+.. ++
T Consensus 8 ~gk~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~l~~~~~~l~~~---~~~~~~~~Dv~d~~~v~~~~~~~~~~~g 84 (296)
T PRK05872 8 AGKVVVVTGAARGIGAELARRLHARGAKLALVDLEEAELAALAAELGGD---DRVLTVVADVTDLAAMQAAAEEAVERFG 84 (296)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcCC---CcEEEEEecCCCHHHHHHHHHHHHHHcC
Confidence 4678888887654 244555666899999999988776665554321 24556668877532 23
Q ss_pred CCccccccccc
Q 018261 121 YFDICVANIPY 131 (359)
Q Consensus 121 ~fD~VvsNlPy 131 (359)
..|++|.|.-.
T Consensus 85 ~id~vI~nAG~ 95 (296)
T PRK05872 85 GIDVVVANAGI 95 (296)
T ss_pred CCCEEEECCCc
Confidence 57888888654
No 355
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=70.38 E-value=51 Score=32.13 Aligned_cols=40 Identities=23% Similarity=0.312 Sum_probs=30.5
Q ss_pred CEEEEEcCcc-c-HHHHHHHHcCCeEEEEeCCHHHHHHHHHH
Q 018261 58 DVILEIGPGT-G-NLTKKLLEAGKMVIAVELDSRMVLELQRR 97 (359)
Q Consensus 58 ~~VLDIGcGt-G-~lt~~La~~~~~V~avDid~~~i~~a~~~ 97 (359)
.+|-=||+|+ | .++..++..|.+|+.+|.+++.++.++..
T Consensus 8 ~~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~~~~~~~~~~ 49 (321)
T PRK07066 8 KTFAAIGSGVIGSGWVARALAHGLDVVAWDPAPGAEAALRAN 49 (321)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHH
Confidence 4677888884 2 45566677799999999999988776554
No 356
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=70.35 E-value=42 Score=28.09 Aligned_cols=74 Identities=19% Similarity=0.259 Sum_probs=42.8
Q ss_pred CCCCEEEEEcCcc--cHHHHHHHHcC-CeEEEEeCCHHHHHHHHHHhhcCCCCCCeEEEEccccCCCCCCCccccccccc
Q 018261 55 KSTDVILEIGPGT--GNLTKKLLEAG-KMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTDLPYFDICVANIPY 131 (359)
Q Consensus 55 ~~~~~VLDIGcGt--G~lt~~La~~~-~~V~avDid~~~i~~a~~~~~~~~~~~~v~~i~~D~~~~~l~~fD~VvsNlPy 131 (359)
..+.+|+=+|||. ..+...|++.+ ..|+.++.+++....+.+.+.... +.....|..+. ....|+|++..|.
T Consensus 17 ~~~~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~~~~~~~~~~~~~~~~----~~~~~~~~~~~-~~~~Dvvi~~~~~ 91 (155)
T cd01065 17 LKGKKVLILGAGGAARAVAYALAELGAAKIVIVNRTLEKAKALAERFGELG----IAIAYLDLEEL-LAEADLIINTTPV 91 (155)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhhcc----cceeecchhhc-cccCCEEEeCcCC
Confidence 3567899999863 23334444454 689999999877665554432210 11222233222 3468988887775
Q ss_pred cc
Q 018261 132 QI 133 (359)
Q Consensus 132 ~i 133 (359)
..
T Consensus 92 ~~ 93 (155)
T cd01065 92 GM 93 (155)
T ss_pred CC
Confidence 43
No 357
>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]
Probab=70.29 E-value=13 Score=34.89 Aligned_cols=40 Identities=28% Similarity=0.277 Sum_probs=27.9
Q ss_pred CCEEEEEcCcccHHHHHHHHc-CCeEEEEeCCHHHHHHHHHH
Q 018261 57 TDVILEIGPGTGNLTKKLLEA-GKMVIAVELDSRMVLELQRR 97 (359)
Q Consensus 57 ~~~VLDIGcGtG~lt~~La~~-~~~V~avDid~~~i~~a~~~ 97 (359)
...|||+|.|+|.-+...+.. +.+|+--|+-.. +..+..+
T Consensus 87 ~~~vlELGsGtglvG~~aa~~~~~~v~ltD~~~~-~~~L~~~ 127 (248)
T KOG2793|consen 87 YINVLELGSGTGLVGILAALLLGAEVVLTDLPKV-VENLKFN 127 (248)
T ss_pred ceeEEEecCCccHHHHHHHHHhcceeccCCchhh-HHHHHHh
Confidence 457999999999777777664 677777776543 3444444
No 358
>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase. This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.
Probab=70.18 E-value=19 Score=32.61 Aligned_cols=69 Identities=20% Similarity=0.209 Sum_probs=44.8
Q ss_pred EEEEEcCcccHHHHHHH----HcCCeEEEEeCCHHHHHHHHHHhhcCCCCCCeEEEEccccCCC------------CCCC
Q 018261 59 VILEIGPGTGNLTKKLL----EAGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTD------------LPYF 122 (359)
Q Consensus 59 ~VLDIGcGtG~lt~~La----~~~~~V~avDid~~~i~~a~~~~~~~~~~~~v~~i~~D~~~~~------------l~~f 122 (359)
+||=.| |+|.++..++ +.+.+|++++.++.-.+.+...+...+ .++.++.+|+.+.. +...
T Consensus 3 ~vlItG-a~g~lG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~ 79 (255)
T TIGR01963 3 TALVTG-AASGIGLAIALALAAAGANVVVNDLGEAGAEAAAKVATDAG--GSVIYLVADVTKEDEIADMIAAAAAEFGGL 79 (255)
T ss_pred EEEEcC-CcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CceEEEECCCCCHHHHHHHHHHHHHhcCCC
Confidence 566666 4555555554 457899999998876666655443322 36888999987643 2346
Q ss_pred cccccccc
Q 018261 123 DICVANIP 130 (359)
Q Consensus 123 D~VvsNlP 130 (359)
|.||.+.-
T Consensus 80 d~vi~~a~ 87 (255)
T TIGR01963 80 DILVNNAG 87 (255)
T ss_pred CEEEECCC
Confidence 77777653
No 359
>PRK08589 short chain dehydrogenase; Validated
Probab=69.98 E-value=23 Score=32.90 Aligned_cols=73 Identities=21% Similarity=0.287 Sum_probs=47.3
Q ss_pred CCCEEEEEcCccc---HHHHHHHHcCCeEEEEeCCHHHHHHHHHHhhcCCCCCCeEEEEccccCCC------------CC
Q 018261 56 STDVILEIGPGTG---NLTKKLLEAGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTD------------LP 120 (359)
Q Consensus 56 ~~~~VLDIGcGtG---~lt~~La~~~~~V~avDid~~~i~~a~~~~~~~~~~~~v~~i~~D~~~~~------------l~ 120 (359)
.+.++|=.|++.| .++..|++.|.+|+.++.++.. ..+.+.+...+ .++.++.+|+.+.. ++
T Consensus 5 ~~k~vlItGas~gIG~aia~~l~~~G~~vi~~~r~~~~-~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~g 81 (272)
T PRK08589 5 ENKVAVITGASTGIGQASAIALAQEGAYVLAVDIAEAV-SETVDKIKSNG--GKAKAYHVDISDEQQVKDFASEIKEQFG 81 (272)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCcHHH-HHHHHHHHhcC--CeEEEEEeecCCHHHHHHHHHHHHHHcC
Confidence 4567888887665 2555666678999999998443 43333333322 26788889987632 23
Q ss_pred CCccccccccc
Q 018261 121 YFDICVANIPY 131 (359)
Q Consensus 121 ~fD~VvsNlPy 131 (359)
..|++|.|.-+
T Consensus 82 ~id~li~~Ag~ 92 (272)
T PRK08589 82 RVDVLFNNAGV 92 (272)
T ss_pred CcCEEEECCCC
Confidence 46888887644
No 360
>PRK08278 short chain dehydrogenase; Provisional
Probab=69.57 E-value=70 Score=29.63 Aligned_cols=74 Identities=18% Similarity=0.297 Sum_probs=46.0
Q ss_pred CCCEEEEEcCccc---HHHHHHHHcCCeEEEEeCCHHH-------HHHHHHHhhcCCCCCCeEEEEccccCCC-------
Q 018261 56 STDVILEIGPGTG---NLTKKLLEAGKMVIAVELDSRM-------VLELQRRFQSTPYSNRLKVIQGDVLKTD------- 118 (359)
Q Consensus 56 ~~~~VLDIGcGtG---~lt~~La~~~~~V~avDid~~~-------i~~a~~~~~~~~~~~~v~~i~~D~~~~~------- 118 (359)
.+.++|=.|++.| .++..|++.+.+|+.++.+... +..+.+.+...+ .++.++.+|+.+..
T Consensus 5 ~~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~--~~~~~~~~D~~~~~~i~~~~~ 82 (273)
T PRK08278 5 SGKTLFITGASRGIGLAIALRAARDGANIVIAAKTAEPHPKLPGTIHTAAEEIEAAG--GQALPLVGDVRDEDQVAAAVA 82 (273)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEecccccccchhhHHHHHHHHHHhcC--CceEEEEecCCCHHHHHHHHH
Confidence 3567888888655 2455566678999999876531 222333333322 36888889987642
Q ss_pred -----CCCCccccccccc
Q 018261 119 -----LPYFDICVANIPY 131 (359)
Q Consensus 119 -----l~~fD~VvsNlPy 131 (359)
++.+|.+|.|..+
T Consensus 83 ~~~~~~g~id~li~~ag~ 100 (273)
T PRK08278 83 KAVERFGGIDICVNNASA 100 (273)
T ss_pred HHHHHhCCCCEEEECCCC
Confidence 1257888877654
No 361
>KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=69.54 E-value=3.4 Score=42.30 Aligned_cols=86 Identities=20% Similarity=0.222 Sum_probs=65.9
Q ss_pred CCCCEEEEEcCcccHHHHHHHHc---CCeEEEEeCCHHHHHHHHHHhhcCCCCCCeEEEEccccCCC------CCCCccc
Q 018261 55 KSTDVILEIGPGTGNLTKKLLEA---GKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTD------LPYFDIC 125 (359)
Q Consensus 55 ~~~~~VLDIGcGtG~lt~~La~~---~~~V~avDid~~~i~~a~~~~~~~~~~~~v~~i~~D~~~~~------l~~fD~V 125 (359)
.++-+|||.=|++|.-++..++. ..+|+|.|.+++.+...+++...+..++.++..+.|+..+- ...||+|
T Consensus 108 ~~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~v~~ive~~~~DA~~lM~~~~~~~~~FDvI 187 (525)
T KOG1253|consen 108 EKSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNGVEDIVEPHHSDANVLMYEHPMVAKFFDVI 187 (525)
T ss_pred cCcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcCchhhcccccchHHHHHHhccccccccceE
Confidence 35568999999999999988876 37899999999999999999988877777888888875432 1268865
Q ss_pred ccccccccchHHHHHH
Q 018261 126 VANIPYQISSPLTFKL 141 (359)
Q Consensus 126 vsNlPy~i~s~ii~~l 141 (359)
=. =||.-.++++...
T Consensus 188 DL-DPyGs~s~FLDsA 202 (525)
T KOG1253|consen 188 DL-DPYGSPSPFLDSA 202 (525)
T ss_pred ec-CCCCCccHHHHHH
Confidence 43 4777777665433
No 362
>PRK08251 short chain dehydrogenase; Provisional
Probab=69.22 E-value=26 Score=31.69 Aligned_cols=73 Identities=19% Similarity=0.175 Sum_probs=46.8
Q ss_pred CCEEEEEcCcccHHHHH----HHHcCCeEEEEeCCHHHHHHHHHHhhcCCCCCCeEEEEccccCCC------------CC
Q 018261 57 TDVILEIGPGTGNLTKK----LLEAGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTD------------LP 120 (359)
Q Consensus 57 ~~~VLDIGcGtG~lt~~----La~~~~~V~avDid~~~i~~a~~~~~~~~~~~~v~~i~~D~~~~~------------l~ 120 (359)
+.++|=.|+ +|.++.. |++.+.+|+.++.++...+.+...+.......++.++.+|+.+.. ++
T Consensus 2 ~k~vlItGa-s~giG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 80 (248)
T PRK08251 2 RQKILITGA-SSGLGAGMAREFAAKGRDLALCARRTDRLEELKAELLARYPGIKVAVAALDVNDHDQVFEVFAEFRDELG 80 (248)
T ss_pred CCEEEEECC-CCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 356787785 5555554 445578999999998777666554432211136888999988642 12
Q ss_pred CCcccccccc
Q 018261 121 YFDICVANIP 130 (359)
Q Consensus 121 ~fD~VvsNlP 130 (359)
..|.+|.|.-
T Consensus 81 ~id~vi~~ag 90 (248)
T PRK08251 81 GLDRVIVNAG 90 (248)
T ss_pred CCCEEEECCC
Confidence 4677777753
No 363
>PLN02989 cinnamyl-alcohol dehydrogenase family protein
Probab=69.18 E-value=18 Score=34.49 Aligned_cols=74 Identities=15% Similarity=0.214 Sum_probs=44.6
Q ss_pred CCCEEEEEcCcccHHHHHHHH----cCCeEEEEeCCHHHHHHHHHHhhcCCCCCCeEEEEccccCCC-----CCCCcccc
Q 018261 56 STDVILEIGPGTGNLTKKLLE----AGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTD-----LPYFDICV 126 (359)
Q Consensus 56 ~~~~VLDIGcGtG~lt~~La~----~~~~V~avDid~~~i~~a~~~~~~~~~~~~v~~i~~D~~~~~-----l~~fD~Vv 126 (359)
.+.+||=.| |+|.++..+++ .|.+|+++..++.....+.......+...+++++.+|+.+.. +...|.||
T Consensus 4 ~~k~vlVtG-~~G~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~vi 82 (325)
T PLN02989 4 GGKVVCVTG-ASGYIASWIVKLLLFRGYTINATVRDPKDRKKTDHLLALDGAKERLKLFKADLLDEGSFELAIDGCETVF 82 (325)
T ss_pred CCCEEEEEC-CchHHHHHHHHHHHHCCCEEEEEEcCCcchhhHHHHHhccCCCCceEEEeCCCCCchHHHHHHcCCCEEE
Confidence 356888888 56766665554 478998887776543333222211111136889999998753 22468777
Q ss_pred cccc
Q 018261 127 ANIP 130 (359)
Q Consensus 127 sNlP 130 (359)
.+..
T Consensus 83 h~A~ 86 (325)
T PLN02989 83 HTAS 86 (325)
T ss_pred EeCC
Confidence 7654
No 364
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=68.95 E-value=86 Score=28.02 Aligned_cols=74 Identities=22% Similarity=0.230 Sum_probs=47.1
Q ss_pred CCCEEEEEcCcccHHHH----HHHHcCCeEEEEeCCHHHHHHHHHHhhcCCCCCCeEEEEccccCCC------------C
Q 018261 56 STDVILEIGPGTGNLTK----KLLEAGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTD------------L 119 (359)
Q Consensus 56 ~~~~VLDIGcGtG~lt~----~La~~~~~V~avDid~~~i~~a~~~~~~~~~~~~v~~i~~D~~~~~------------l 119 (359)
.+.+||=.|+ +|.++. .|++++.+|++++-++.-+..+.+.+...+ .++.++.+|+.+.. +
T Consensus 5 ~~~~ilItGa-sg~iG~~l~~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 81 (251)
T PRK12826 5 EGRVALVTGA-ARGIGRAIAVRLAADGAEVIVVDICGDDAAATAELVEAAG--GKARARQVDVRDRAALKAAVAAGVEDF 81 (251)
T ss_pred CCCEEEEcCC-CCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CeEEEEECCCCCHHHHHHHHHHHHHHh
Confidence 3467887775 454444 455668999999998765555444443332 25888999987632 1
Q ss_pred CCCcccccccccc
Q 018261 120 PYFDICVANIPYQ 132 (359)
Q Consensus 120 ~~fD~VvsNlPy~ 132 (359)
+.+|.||.+....
T Consensus 82 ~~~d~vi~~ag~~ 94 (251)
T PRK12826 82 GRLDILVANAGIF 94 (251)
T ss_pred CCCCEEEECCCCC
Confidence 2568887776543
No 365
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=68.53 E-value=27 Score=29.29 Aligned_cols=72 Identities=21% Similarity=0.327 Sum_probs=47.8
Q ss_pred EEEEEcCccc---HHHHHHHHc-CCeEEEEeCC--HHHHHHHHHHhhcCCCCCCeEEEEccccCCC------------CC
Q 018261 59 VILEIGPGTG---NLTKKLLEA-GKMVIAVELD--SRMVLELQRRFQSTPYSNRLKVIQGDVLKTD------------LP 120 (359)
Q Consensus 59 ~VLDIGcGtG---~lt~~La~~-~~~V~avDid--~~~i~~a~~~~~~~~~~~~v~~i~~D~~~~~------------l~ 120 (359)
+||=.|++.| .++..|++. +.+|+.+.-+ ......+...+...+ .++.++..|+.+.. ..
T Consensus 2 ~~lItGa~~giG~~~a~~l~~~g~~~v~~~~r~~~~~~~~~l~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 79 (167)
T PF00106_consen 2 TVLITGASSGIGRALARALARRGARVVILTSRSEDSEGAQELIQELKAPG--AKITFIECDLSDPESIRALIEEVIKRFG 79 (167)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTTEEEEEEESSCHHHHHHHHHHHHHHTT--SEEEEEESETTSHHHHHHHHHHHHHHHS
T ss_pred EEEEECCCCHHHHHHHHHHHhcCceEEEEeeecccccccccccccccccc--cccccccccccccccccccccccccccc
Confidence 5677787766 356666777 4588888888 555565655555333 38999999987642 12
Q ss_pred CCcccccccccc
Q 018261 121 YFDICVANIPYQ 132 (359)
Q Consensus 121 ~fD~VvsNlPy~ 132 (359)
..|++|.|....
T Consensus 80 ~ld~li~~ag~~ 91 (167)
T PF00106_consen 80 PLDILINNAGIF 91 (167)
T ss_dssp SESEEEEECSCT
T ss_pred cccccccccccc
Confidence 578888775543
No 366
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=68.21 E-value=29 Score=31.09 Aligned_cols=72 Identities=18% Similarity=0.238 Sum_probs=47.3
Q ss_pred CCCEEEEEcCccc---HHHHHHHHcCCeEEEEeCCHHHHHHHHHHhhcCCCCCCeEEEEccccCCC------------CC
Q 018261 56 STDVILEIGPGTG---NLTKKLLEAGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTD------------LP 120 (359)
Q Consensus 56 ~~~~VLDIGcGtG---~lt~~La~~~~~V~avDid~~~i~~a~~~~~~~~~~~~v~~i~~D~~~~~------------l~ 120 (359)
.+.+||=.|++.| .+...|++.|.+|++++-++.-.+.+.+.....+ ++.++.+|+.+.. +.
T Consensus 4 ~~~~vlItGa~g~iG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~---~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 80 (238)
T PRK05786 4 KGKKVAIIGVSEGLGYAVAYFALKEGAQVCINSRNENKLKRMKKTLSKYG---NIHYVVGDVSSTESARNVIEKAAKVLN 80 (238)
T ss_pred CCcEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC---CeEEEECCCCCHHHHHHHHHHHHHHhC
Confidence 3568999998543 2344455568999999999887666655444332 6788899987532 12
Q ss_pred CCcccccccc
Q 018261 121 YFDICVANIP 130 (359)
Q Consensus 121 ~fD~VvsNlP 130 (359)
..|.++.+..
T Consensus 81 ~id~ii~~ag 90 (238)
T PRK05786 81 AIDGLVVTVG 90 (238)
T ss_pred CCCEEEEcCC
Confidence 3577776654
No 367
>PRK07791 short chain dehydrogenase; Provisional
Probab=67.95 E-value=27 Score=32.86 Aligned_cols=74 Identities=15% Similarity=0.188 Sum_probs=47.5
Q ss_pred CCCEEEEEcCcccH---HHHHHHHcCCeEEEEeCCH---------HHHHHHHHHhhcCCCCCCeEEEEccccCCC-----
Q 018261 56 STDVILEIGPGTGN---LTKKLLEAGKMVIAVELDS---------RMVLELQRRFQSTPYSNRLKVIQGDVLKTD----- 118 (359)
Q Consensus 56 ~~~~VLDIGcGtG~---lt~~La~~~~~V~avDid~---------~~i~~a~~~~~~~~~~~~v~~i~~D~~~~~----- 118 (359)
.+.++|=.|++.|. ++..|++.|.+|+.++.+. ..+..+.+.+...+ .++.++..|+.+..
T Consensus 5 ~~k~~lITGas~GIG~aia~~la~~G~~vii~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~Dv~~~~~v~~~ 82 (286)
T PRK07791 5 DGRVVIVTGAGGGIGRAHALAFAAEGARVVVNDIGVGLDGSASGGSAAQAVVDEIVAAG--GEAVANGDDIADWDGAANL 82 (286)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCEEEEeeCCccccccccchhHHHHHHHHHHhcC--CceEEEeCCCCCHHHHHHH
Confidence 56788999987762 5556667789999988764 33444434333322 25778888887632
Q ss_pred -------CCCCccccccccc
Q 018261 119 -------LPYFDICVANIPY 131 (359)
Q Consensus 119 -------l~~fD~VvsNlPy 131 (359)
+...|.+|.|.-+
T Consensus 83 ~~~~~~~~g~id~lv~nAG~ 102 (286)
T PRK07791 83 VDAAVETFGGLDVLVNNAGI 102 (286)
T ss_pred HHHHHHhcCCCCEEEECCCC
Confidence 2356888887543
No 368
>PRK05875 short chain dehydrogenase; Provisional
Probab=67.86 E-value=1e+02 Score=28.35 Aligned_cols=75 Identities=17% Similarity=0.200 Sum_probs=45.9
Q ss_pred CCCEEEEEcCccc---HHHHHHHHcCCeEEEEeCCHHHHHHHHHHhhcCCCCCCeEEEEccccCCC------------CC
Q 018261 56 STDVILEIGPGTG---NLTKKLLEAGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTD------------LP 120 (359)
Q Consensus 56 ~~~~VLDIGcGtG---~lt~~La~~~~~V~avDid~~~i~~a~~~~~~~~~~~~v~~i~~D~~~~~------------l~ 120 (359)
.+.++|=.|++.| .++..|++.|.+|++++.++.-.+...+.+.......++.++.+|+.+.. +.
T Consensus 6 ~~k~vlItGasg~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 85 (276)
T PRK05875 6 QDRTYLVTGGGSGIGKGVAAGLVAAGAAVMIVGRNPDKLAAAAEEIEALKGAGAVRYEPADVTDEDQVARAVDAATAWHG 85 (276)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhccCCCceEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 3578888886433 23344455688999999887655544444332211136888889987532 12
Q ss_pred CCcccccccc
Q 018261 121 YFDICVANIP 130 (359)
Q Consensus 121 ~fD~VvsNlP 130 (359)
..|.+|.|.-
T Consensus 86 ~~d~li~~ag 95 (276)
T PRK05875 86 RLHGVVHCAG 95 (276)
T ss_pred CCCEEEECCC
Confidence 4688877653
No 369
>PRK07677 short chain dehydrogenase; Provisional
Probab=67.53 E-value=28 Score=31.74 Aligned_cols=71 Identities=20% Similarity=0.331 Sum_probs=47.6
Q ss_pred CEEEEEcCccc---HHHHHHHHcCCeEEEEeCCHHHHHHHHHHhhcCCCCCCeEEEEccccCCC------------CCCC
Q 018261 58 DVILEIGPGTG---NLTKKLLEAGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTD------------LPYF 122 (359)
Q Consensus 58 ~~VLDIGcGtG---~lt~~La~~~~~V~avDid~~~i~~a~~~~~~~~~~~~v~~i~~D~~~~~------------l~~f 122 (359)
.++|=.|++.| .++..|++.|.+|+.++.++...+.+.+.+...+ .++.++.+|+.+.. ++..
T Consensus 2 k~~lItG~s~giG~~ia~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i 79 (252)
T PRK07677 2 KVVIITGGSSGMGKAMAKRFAEEGANVVITGRTKEKLEEAKLEIEQFP--GQVLTVQMDVRNPEDVQKMVEQIDEKFGRI 79 (252)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEecCCCHHHHHHHHHHHHHHhCCc
Confidence 56787888655 2455566678999999998877666655554332 36888999986532 1346
Q ss_pred cccccccc
Q 018261 123 DICVANIP 130 (359)
Q Consensus 123 D~VvsNlP 130 (359)
|.+|.|..
T Consensus 80 d~lI~~ag 87 (252)
T PRK07677 80 DALINNAA 87 (252)
T ss_pred cEEEECCC
Confidence 88887753
No 370
>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional
Probab=67.47 E-value=24 Score=32.56 Aligned_cols=73 Identities=11% Similarity=0.100 Sum_probs=45.0
Q ss_pred CCCEEEEEcCcc----c-HHHHHHHHcCCeEEEEeCCHHHHHHHHHHhhcCCCCCCeEEEEccccCCC------------
Q 018261 56 STDVILEIGPGT----G-NLTKKLLEAGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTD------------ 118 (359)
Q Consensus 56 ~~~~VLDIGcGt----G-~lt~~La~~~~~V~avDid~~~i~~a~~~~~~~~~~~~v~~i~~D~~~~~------------ 118 (359)
.+.++|=.|.++ | .++..|++.|++|+.++.+.+..+.+.+.....+ .+.++.+|+.+..
T Consensus 9 ~~k~~lItGas~g~GIG~a~a~~la~~G~~v~l~~r~~~~~~~~~~~~~~~~---~~~~~~~D~~~~~~v~~~~~~~~~~ 85 (258)
T PRK07533 9 AGKRGLVVGIANEQSIAWGCARAFRALGAELAVTYLNDKARPYVEPLAEELD---APIFLPLDVREPGQLEAVFARIAEE 85 (258)
T ss_pred CCCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEEeCChhhHHHHHHHHHhhc---cceEEecCcCCHHHHHHHHHHHHHH
Confidence 467889999764 2 3455666678999999988654333333222222 3456778876532
Q ss_pred CCCCccccccccc
Q 018261 119 LPYFDICVANIPY 131 (359)
Q Consensus 119 l~~fD~VvsNlPy 131 (359)
+...|++|.|.-+
T Consensus 86 ~g~ld~lv~nAg~ 98 (258)
T PRK07533 86 WGRLDFLLHSIAF 98 (258)
T ss_pred cCCCCEEEEcCcc
Confidence 2346888888643
No 371
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=67.34 E-value=28 Score=35.09 Aligned_cols=83 Identities=19% Similarity=0.252 Sum_probs=51.6
Q ss_pred CCCEEEEEcCcccHH--HHHHHHcCCeEEEEeCCH-HHHHHHHHHhhcCCCCCCeEEEEccccCCCCCCCcccccccccc
Q 018261 56 STDVILEIGPGTGNL--TKKLLEAGKMVIAVELDS-RMVLELQRRFQSTPYSNRLKVIQGDVLKTDLPYFDICVANIPYQ 132 (359)
Q Consensus 56 ~~~~VLDIGcGtG~l--t~~La~~~~~V~avDid~-~~i~~a~~~~~~~~~~~~v~~i~~D~~~~~l~~fD~VvsNlPy~ 132 (359)
.+.+|+=+|.|...+ +..|++.|++|+++|.+. ..+....+.+... +++++.+|..+.....+|+||.+.-+.
T Consensus 4 ~~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~~l~~~----~~~~~~~~~~~~~~~~~d~vv~~~g~~ 79 (450)
T PRK14106 4 KGKKVLVVGAGVSGLALAKFLKKLGAKVILTDEKEEDQLKEALEELGEL----GIELVLGEYPEEFLEGVDLVVVSPGVP 79 (450)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHhc----CCEEEeCCcchhHhhcCCEEEECCCCC
Confidence 357788888877443 345556699999999985 3333222333322 466777777653344689888876665
Q ss_pred cchHHHHHHH
Q 018261 133 ISSPLTFKLL 142 (359)
Q Consensus 133 i~s~ii~~ll 142 (359)
...|.+....
T Consensus 80 ~~~~~~~~a~ 89 (450)
T PRK14106 80 LDSPPVVQAH 89 (450)
T ss_pred CCCHHHHHHH
Confidence 6666554443
No 372
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=67.22 E-value=8.8 Score=40.17 Aligned_cols=62 Identities=23% Similarity=0.316 Sum_probs=42.5
Q ss_pred CEEEEEcCcccHHHHHHH----HcCCeEEEEeCCHHHHHHHHHHhhcCCCCCCeEEEEccccCCC------CCCCccccc
Q 018261 58 DVILEIGPGTGNLTKKLL----EAGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTD------LPYFDICVA 127 (359)
Q Consensus 58 ~~VLDIGcGtG~lt~~La----~~~~~V~avDid~~~i~~a~~~~~~~~~~~~v~~i~~D~~~~~------l~~fD~Vvs 127 (359)
++|+=+||| .+++.++ +.+..|+.+|.|++.++.+++. ...++++|+.+.. ....|.++.
T Consensus 418 ~hiiI~G~G--~~G~~la~~L~~~g~~vvvId~d~~~~~~~~~~--------g~~~i~GD~~~~~~L~~a~i~~a~~viv 487 (558)
T PRK10669 418 NHALLVGYG--RVGSLLGEKLLAAGIPLVVIETSRTRVDELRER--------GIRAVLGNAANEEIMQLAHLDCARWLLL 487 (558)
T ss_pred CCEEEECCC--hHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHC--------CCeEEEcCCCCHHHHHhcCccccCEEEE
Confidence 456666665 4444444 4478999999999998888752 4678999998742 335676655
Q ss_pred cc
Q 018261 128 NI 129 (359)
Q Consensus 128 Nl 129 (359)
..
T Consensus 488 ~~ 489 (558)
T PRK10669 488 TI 489 (558)
T ss_pred Ec
Confidence 33
No 373
>PRK06197 short chain dehydrogenase; Provisional
Probab=67.09 E-value=28 Score=32.91 Aligned_cols=75 Identities=17% Similarity=0.189 Sum_probs=47.0
Q ss_pred CCCEEEEEcCccc---HHHHHHHHcCCeEEEEeCCHHHHHHHHHHhhcCCCCCCeEEEEccccCCC------------CC
Q 018261 56 STDVILEIGPGTG---NLTKKLLEAGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTD------------LP 120 (359)
Q Consensus 56 ~~~~VLDIGcGtG---~lt~~La~~~~~V~avDid~~~i~~a~~~~~~~~~~~~v~~i~~D~~~~~------------l~ 120 (359)
.+.+||=.|+..| .+...|++.|.+|+.+..++.....+.+.+.......++.++.+|+.+.. ++
T Consensus 15 ~~k~vlItGas~gIG~~~a~~l~~~G~~vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~~~ 94 (306)
T PRK06197 15 SGRVAVVTGANTGLGYETAAALAAKGAHVVLAVRNLDKGKAAAARITAATPGADVTLQELDLTSLASVRAAADALRAAYP 94 (306)
T ss_pred CCCEEEEcCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEECCCCCHHHHHHHHHHHHhhCC
Confidence 4578888886433 23344555688999999887765555444432111126788899987643 23
Q ss_pred CCcccccccc
Q 018261 121 YFDICVANIP 130 (359)
Q Consensus 121 ~fD~VvsNlP 130 (359)
..|++|.|..
T Consensus 95 ~iD~li~nAg 104 (306)
T PRK06197 95 RIDLLINNAG 104 (306)
T ss_pred CCCEEEECCc
Confidence 4788888764
No 374
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=67.00 E-value=23 Score=36.42 Aligned_cols=81 Identities=10% Similarity=0.101 Sum_probs=50.9
Q ss_pred CCCCEEEEEcCcccHHHHH--HHHcCCeEEEEeCCHHHHHHHHHHhhcCCCCCCeEEEEccccCCCCCCCcccccccccc
Q 018261 55 KSTDVILEIGPGTGNLTKK--LLEAGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTDLPYFDICVANIPYQ 132 (359)
Q Consensus 55 ~~~~~VLDIGcGtG~lt~~--La~~~~~V~avDid~~~i~~a~~~~~~~~~~~~v~~i~~D~~~~~l~~fD~VvsNlPy~ 132 (359)
.++.+|+=+|.|.-.++.. |...|.+|++.|..+..++.+++ . .+.++.++.....+..+|+||.++...
T Consensus 10 ~~~~~v~V~G~G~sG~aa~~~L~~~G~~v~~~D~~~~~~~~l~~----~----g~~~~~~~~~~~~l~~~D~VV~SpGi~ 81 (488)
T PRK03369 10 LPGAPVLVAGAGVTGRAVLAALTRFGARPTVCDDDPDALRPHAE----R----GVATVSTSDAVQQIADYALVVTSPGFR 81 (488)
T ss_pred cCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHh----C----CCEEEcCcchHhHhhcCCEEEECCCCC
Confidence 4678899999986555544 55668999999987665443322 2 345554432211234578888887766
Q ss_pred cchHHHHHHHh
Q 018261 133 ISSPLTFKLLF 143 (359)
Q Consensus 133 i~s~ii~~ll~ 143 (359)
...|.+....+
T Consensus 82 ~~~p~~~~a~~ 92 (488)
T PRK03369 82 PTAPVLAAAAA 92 (488)
T ss_pred CCCHHHHHHHH
Confidence 67776655543
No 375
>PRK07326 short chain dehydrogenase; Provisional
Probab=67.00 E-value=26 Score=31.31 Aligned_cols=58 Identities=17% Similarity=0.191 Sum_probs=39.4
Q ss_pred CCCEEEEEcCcccHHHHHH----HHcCCeEEEEeCCHHHHHHHHHHhhcCCCCCCeEEEEccccCC
Q 018261 56 STDVILEIGPGTGNLTKKL----LEAGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKT 117 (359)
Q Consensus 56 ~~~~VLDIGcGtG~lt~~L----a~~~~~V~avDid~~~i~~a~~~~~~~~~~~~v~~i~~D~~~~ 117 (359)
.+.+||=+|. +|.++..+ ++.+.+|++++.++.-...+.+.+... .++.++.+|+.+.
T Consensus 5 ~~~~ilItGa-tg~iG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~---~~~~~~~~D~~~~ 66 (237)
T PRK07326 5 KGKVALITGG-SKGIGFAIAEALLAEGYKVAITARDQKELEEAAAELNNK---GNVLGLAADVRDE 66 (237)
T ss_pred CCCEEEEECC-CCcHHHHHHHHHHHCCCEEEEeeCCHHHHHHHHHHHhcc---CcEEEEEccCCCH
Confidence 3567888884 56555554 445789999999887666555544332 2688889998753
No 376
>PRK06180 short chain dehydrogenase; Provisional
Probab=66.97 E-value=1.1e+02 Score=28.36 Aligned_cols=70 Identities=24% Similarity=0.289 Sum_probs=45.7
Q ss_pred CCEEEEEcCccc---HHHHHHHHcCCeEEEEeCCHHHHHHHHHHhhcCCCCCCeEEEEccccCCC------------CCC
Q 018261 57 TDVILEIGPGTG---NLTKKLLEAGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTD------------LPY 121 (359)
Q Consensus 57 ~~~VLDIGcGtG---~lt~~La~~~~~V~avDid~~~i~~a~~~~~~~~~~~~v~~i~~D~~~~~------------l~~ 121 (359)
+.+||=.|++.| .++..|++.|.+|++++.++..+..+.+.. + .++.++.+|+.+.. ++.
T Consensus 4 ~~~vlVtGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~l~~~~---~--~~~~~~~~D~~d~~~~~~~~~~~~~~~~~ 78 (277)
T PRK06180 4 MKTWLITGVSSGFGRALAQAALAAGHRVVGTVRSEAARADFEALH---P--DRALARLLDVTDFDAIDAVVADAEATFGP 78 (277)
T ss_pred CCEEEEecCCChHHHHHHHHHHhCcCEEEEEeCCHHHHHHHHhhc---C--CCeeEEEccCCCHHHHHHHHHHHHHHhCC
Confidence 467888888554 244555566899999999987665444321 1 26778888887532 124
Q ss_pred Cccccccccc
Q 018261 122 FDICVANIPY 131 (359)
Q Consensus 122 fD~VvsNlPy 131 (359)
+|.||.|...
T Consensus 79 ~d~vv~~ag~ 88 (277)
T PRK06180 79 IDVLVNNAGY 88 (277)
T ss_pred CCEEEECCCc
Confidence 6888877544
No 377
>PRK12939 short chain dehydrogenase; Provisional
Probab=66.43 E-value=97 Score=27.69 Aligned_cols=73 Identities=22% Similarity=0.170 Sum_probs=47.6
Q ss_pred CCCEEEEEcCcccHHHHHH----HHcCCeEEEEeCCHHHHHHHHHHhhcCCCCCCeEEEEccccCCC------------C
Q 018261 56 STDVILEIGPGTGNLTKKL----LEAGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTD------------L 119 (359)
Q Consensus 56 ~~~~VLDIGcGtG~lt~~L----a~~~~~V~avDid~~~i~~a~~~~~~~~~~~~v~~i~~D~~~~~------------l 119 (359)
.+.+||=.|+ +|.++..+ ++.+.+|++++.++.-+..+.+.+...+ .++.++.+|+.+.. +
T Consensus 6 ~~~~vlItGa-~g~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 82 (250)
T PRK12939 6 AGKRALVTGA-ARGLGAAFAEALAEAGATVAFNDGLAAEARELAAALEAAG--GRAHAIAADLADPASVQRFFDAAAAAL 82 (250)
T ss_pred CCCEEEEeCC-CChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence 4577887775 45555554 4458899999988876666555544322 26888999987632 1
Q ss_pred CCCccccccccc
Q 018261 120 PYFDICVANIPY 131 (359)
Q Consensus 120 ~~fD~VvsNlPy 131 (359)
...|.++.|.-.
T Consensus 83 ~~id~vi~~ag~ 94 (250)
T PRK12939 83 GGLDGLVNNAGI 94 (250)
T ss_pred CCCCEEEECCCC
Confidence 346877776543
No 378
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=66.24 E-value=21 Score=34.51 Aligned_cols=46 Identities=28% Similarity=0.559 Sum_probs=36.0
Q ss_pred HcCCCCCCEEEEEcCcc-cHHHHHHHHc-CCeEEEEeCCHHHHHHHHH
Q 018261 51 KAGIKSTDVILEIGPGT-GNLTKKLLEA-GKMVIAVELDSRMVLELQR 96 (359)
Q Consensus 51 ~~~~~~~~~VLDIGcGt-G~lt~~La~~-~~~V~avDid~~~i~~a~~ 96 (359)
...+.++++||=+|||. |.++..+++. +.+|++++.+++-++.+++
T Consensus 161 ~~~~~~g~~VlV~G~G~vG~~a~~~a~~~G~~vi~~~~~~~~~~~~~~ 208 (349)
T TIGR03201 161 QAGLKKGDLVIVIGAGGVGGYMVQTAKAMGAAVVAIDIDPEKLEMMKG 208 (349)
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHH
Confidence 45677889999999865 6666666665 6789999999998887755
No 379
>PRK06914 short chain dehydrogenase; Provisional
Probab=66.22 E-value=34 Score=31.66 Aligned_cols=74 Identities=23% Similarity=0.260 Sum_probs=46.5
Q ss_pred CCEEEEEcCccc---HHHHHHHHcCCeEEEEeCCHHHHHHHHHHhhcCCCCCCeEEEEccccCCC-----------CCCC
Q 018261 57 TDVILEIGPGTG---NLTKKLLEAGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTD-----------LPYF 122 (359)
Q Consensus 57 ~~~VLDIGcGtG---~lt~~La~~~~~V~avDid~~~i~~a~~~~~~~~~~~~v~~i~~D~~~~~-----------l~~f 122 (359)
+.++|=.|+..| .+...|++.|.+|++++-++.-.+...+.....+...++.++.+|+.+.. ++..
T Consensus 3 ~k~~lItGasg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~~i 82 (280)
T PRK06914 3 KKIAIVTGASSGFGLLTTLELAKKGYLVIATMRNPEKQENLLSQATQLNLQQNIKVQQLDVTDQNSIHNFQLVLKEIGRI 82 (280)
T ss_pred CCEEEEECCCchHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcCCCCceeEEecCCCCHHHHHHHHHHHHhcCCe
Confidence 456788886443 23344556689999999888766655544433222236888999987632 1245
Q ss_pred cccccccc
Q 018261 123 DICVANIP 130 (359)
Q Consensus 123 D~VvsNlP 130 (359)
|.||.|..
T Consensus 83 d~vv~~ag 90 (280)
T PRK06914 83 DLLVNNAG 90 (280)
T ss_pred eEEEECCc
Confidence 77777654
No 380
>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]
Probab=65.59 E-value=15 Score=33.28 Aligned_cols=79 Identities=16% Similarity=0.188 Sum_probs=53.2
Q ss_pred CCCcccccCHHHHHHHHHHcCCCCCCEEEEEcCcccHHHHHHHHc----C--CeEEEEeCCHHHHHHHHHHhhcCCCCCC
Q 018261 33 SKGQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEA----G--KMVIAVELDSRMVLELQRRFQSTPYSNR 106 (359)
Q Consensus 33 ~~GQ~fl~d~~v~~~iv~~~~~~~~~~VLDIGcGtG~lt~~La~~----~--~~V~avDid~~~i~~a~~~~~~~~~~~~ 106 (359)
-+|..-+.++.-+-.+-+.+--..++.|+|+|.-.|.-.+..|.. | .+|+++|||-.-+..+... . .+
T Consensus 46 wmG~p~~k~p~D~~~yQellw~~~P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~e---~---p~ 119 (237)
T COG3510 46 WMGIPCIKSPSDMWNYQELLWELQPSLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPAARE---V---PD 119 (237)
T ss_pred EecccccCCHHHHHHHHHHHHhcCCceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcCChhhhc---C---CC
Confidence 356666677655544444442335678999999999877776653 5 7899999997654443322 2 27
Q ss_pred eEEEEccccCC
Q 018261 107 LKVIQGDVLKT 117 (359)
Q Consensus 107 v~~i~~D~~~~ 117 (359)
+.++.++-.+.
T Consensus 120 i~f~egss~dp 130 (237)
T COG3510 120 ILFIEGSSTDP 130 (237)
T ss_pred eEEEeCCCCCH
Confidence 99999987653
No 381
>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional
Probab=65.35 E-value=1e+02 Score=27.68 Aligned_cols=73 Identities=15% Similarity=0.203 Sum_probs=47.4
Q ss_pred CCCCEEEEEcCcccHHHH----HHHHcCCeEEEEeCCHHHHHHHHHHhhcCCCCCCeEEEEccccCCC------------
Q 018261 55 KSTDVILEIGPGTGNLTK----KLLEAGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTD------------ 118 (359)
Q Consensus 55 ~~~~~VLDIGcGtG~lt~----~La~~~~~V~avDid~~~i~~a~~~~~~~~~~~~v~~i~~D~~~~~------------ 118 (359)
.++.+||=.|+ +|.++. .|++.+.+|++++.++.....+.+.+...+ ..++.++.+|+...+
T Consensus 10 ~~~k~vlItG~-~g~iG~~la~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~-~~~~~~~~~d~~~~~~~~~~~~~~~~~ 87 (247)
T PRK08945 10 LKDRIILVTGA-GDGIGREAALTYARHGATVILLGRTEEKLEAVYDEIEAAG-GPQPAIIPLDLLTATPQNYQQLADTIE 87 (247)
T ss_pred cCCCEEEEeCC-CchHHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHhcC-CCCceEEEecccCCCHHHHHHHHHHHH
Confidence 46778999995 555554 445558899999999877666655554332 125677777775321
Q ss_pred --CCCCccccccc
Q 018261 119 --LPYFDICVANI 129 (359)
Q Consensus 119 --l~~fD~VvsNl 129 (359)
++..|.||.|.
T Consensus 88 ~~~~~id~vi~~A 100 (247)
T PRK08945 88 EQFGRLDGVLHNA 100 (247)
T ss_pred HHhCCCCEEEECC
Confidence 23568888775
No 382
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=65.09 E-value=21 Score=33.74 Aligned_cols=45 Identities=27% Similarity=0.400 Sum_probs=35.6
Q ss_pred cCCCCCCEEEEEcCc-ccHHHHHHHHc-CCeEEEEeCCHHHHHHHHH
Q 018261 52 AGIKSTDVILEIGPG-TGNLTKKLLEA-GKMVIAVELDSRMVLELQR 96 (359)
Q Consensus 52 ~~~~~~~~VLDIGcG-tG~lt~~La~~-~~~V~avDid~~~i~~a~~ 96 (359)
..+.++.+||-.|+| .|..+..+++. +.+|++++.++...+.+++
T Consensus 161 ~~~~~~~~vli~g~g~vG~~~~~la~~~G~~V~~~~~s~~~~~~~~~ 207 (338)
T cd08254 161 GEVKPGETVLVIGLGGLGLNAVQIAKAMGAAVIAVDIKEEKLELAKE 207 (338)
T ss_pred cCCCCCCEEEEECCcHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHH
Confidence 346778899888876 47777777765 7889999999998888755
No 383
>PRK06196 oxidoreductase; Provisional
Probab=64.96 E-value=1.2e+02 Score=28.63 Aligned_cols=70 Identities=21% Similarity=0.215 Sum_probs=46.0
Q ss_pred CCCEEEEEcCccc---HHHHHHHHcCCeEEEEeCCHHHHHHHHHHhhcCCCCCCeEEEEccccCCC------------CC
Q 018261 56 STDVILEIGPGTG---NLTKKLLEAGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTD------------LP 120 (359)
Q Consensus 56 ~~~~VLDIGcGtG---~lt~~La~~~~~V~avDid~~~i~~a~~~~~~~~~~~~v~~i~~D~~~~~------------l~ 120 (359)
.+.+||=.|++.| .++..|++.|.+|++++.++...+.+.+.+. ++.++.+|+.+.. +.
T Consensus 25 ~~k~vlITGasggIG~~~a~~L~~~G~~Vv~~~R~~~~~~~~~~~l~------~v~~~~~Dl~d~~~v~~~~~~~~~~~~ 98 (315)
T PRK06196 25 SGKTAIVTGGYSGLGLETTRALAQAGAHVIVPARRPDVAREALAGID------GVEVVMLDLADLESVRAFAERFLDSGR 98 (315)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhh------hCeEEEccCCCHHHHHHHHHHHHhcCC
Confidence 4578888886543 2344455568999999998876555444332 4678888987642 13
Q ss_pred CCccccccccc
Q 018261 121 YFDICVANIPY 131 (359)
Q Consensus 121 ~fD~VvsNlPy 131 (359)
..|++|.|..+
T Consensus 99 ~iD~li~nAg~ 109 (315)
T PRK06196 99 RIDILINNAGV 109 (315)
T ss_pred CCCEEEECCCC
Confidence 46888887654
No 384
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=64.71 E-value=26 Score=35.47 Aligned_cols=56 Identities=23% Similarity=0.321 Sum_probs=39.9
Q ss_pred CHHHHHHHHHHcCC-CCCCEEEEEcCcc-cHHHHHHHHc-CCeEEEEeCCHHHHHHHHH
Q 018261 41 NPLLVESIVQKAGI-KSTDVILEIGPGT-GNLTKKLLEA-GKMVIAVELDSRMVLELQR 96 (359)
Q Consensus 41 d~~v~~~iv~~~~~-~~~~~VLDIGcGt-G~lt~~La~~-~~~V~avDid~~~i~~a~~ 96 (359)
-..+.+.+.+..++ .++++|+=+|+|. |..+..+++. |.+|+.+|.++.-...|++
T Consensus 185 g~s~~~~i~r~t~~~l~GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~R~~~A~~ 243 (413)
T cd00401 185 RESLIDGIKRATDVMIAGKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPICALQAAM 243 (413)
T ss_pred chhhHHHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECChhhHHHHHh
Confidence 34455677776655 4789999999996 4444444443 7899999999987777655
No 385
>TIGR02632 RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alcohol dehydrogenase.
Probab=64.55 E-value=1.1e+02 Score=32.93 Aligned_cols=77 Identities=18% Similarity=0.223 Sum_probs=49.4
Q ss_pred CCCEEEEEcCccc---HHHHHHHHcCCeEEEEeCCHHHHHHHHHHhhcCCCCCCeEEEEccccCCC------------CC
Q 018261 56 STDVILEIGPGTG---NLTKKLLEAGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTD------------LP 120 (359)
Q Consensus 56 ~~~~VLDIGcGtG---~lt~~La~~~~~V~avDid~~~i~~a~~~~~~~~~~~~v~~i~~D~~~~~------------l~ 120 (359)
.+.+||=.|++.| .++..|++.|.+|++++.++...+.+.+.+....-..++.++.+|+.+.. ++
T Consensus 413 ~gkvvLVTGasggIG~aiA~~La~~Ga~Vvi~~r~~~~~~~~~~~l~~~~~~~~~~~v~~Dvtd~~~v~~a~~~i~~~~g 492 (676)
T TIGR02632 413 ARRVAFVTGGAGGIGRETARRLAAEGAHVVLADLNLEAAEAVAAEINGQFGAGRAVALKMDVTDEQAVKAAFADVALAYG 492 (676)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhhcCCCcEEEEECCCCCHHHHHHHHHHHHHhcC
Confidence 3578888887544 23445556689999999998776665554432110125678889987532 22
Q ss_pred CCcccccccccc
Q 018261 121 YFDICVANIPYQ 132 (359)
Q Consensus 121 ~fD~VvsNlPy~ 132 (359)
.+|++|.|.-+.
T Consensus 493 ~iDilV~nAG~~ 504 (676)
T TIGR02632 493 GVDIVVNNAGIA 504 (676)
T ss_pred CCcEEEECCCCC
Confidence 478888886543
No 386
>PRK06720 hypothetical protein; Provisional
Probab=64.54 E-value=42 Score=29.27 Aligned_cols=76 Identities=17% Similarity=0.175 Sum_probs=49.3
Q ss_pred CCCEEEEEcCcccH---HHHHHHHcCCeEEEEeCCHHHHHHHHHHhhcCCCCCCeEEEEccccCCC------------CC
Q 018261 56 STDVILEIGPGTGN---LTKKLLEAGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTD------------LP 120 (359)
Q Consensus 56 ~~~~VLDIGcGtG~---lt~~La~~~~~V~avDid~~~i~~a~~~~~~~~~~~~v~~i~~D~~~~~------------l~ 120 (359)
.+..+|=.|.+.|. +...|++.+.+|+.++.++.....+.+.+...+ ..+.++..|..+.. +.
T Consensus 15 ~gk~~lVTGa~~GIG~aia~~l~~~G~~V~l~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dl~~~~~v~~~v~~~~~~~G 92 (169)
T PRK06720 15 AGKVAIVTGGGIGIGRNTALLLAKQGAKVIVTDIDQESGQATVEEITNLG--GEALFVSYDMEKQGDWQRVISITLNAFS 92 (169)
T ss_pred CCCEEEEecCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 45678888876542 555666778999999998876655544443322 25667788876432 23
Q ss_pred CCccccccccccc
Q 018261 121 YFDICVANIPYQI 133 (359)
Q Consensus 121 ~fD~VvsNlPy~i 133 (359)
..|.+|.|....+
T Consensus 93 ~iDilVnnAG~~~ 105 (169)
T PRK06720 93 RIDMLFQNAGLYK 105 (169)
T ss_pred CCCEEEECCCcCC
Confidence 4688888865544
No 387
>KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=64.37 E-value=8 Score=38.65 Aligned_cols=89 Identities=18% Similarity=0.244 Sum_probs=61.8
Q ss_pred cCHHHHHHHHHHcCCCCCCEEEEEcCcccHHHHHHHHcC--CeEEEEeCCHHHHHHHHHHhh-------cCCC-CCCeEE
Q 018261 40 KNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEAG--KMVIAVELDSRMVLELQRRFQ-------STPY-SNRLKV 109 (359)
Q Consensus 40 ~d~~v~~~iv~~~~~~~~~~VLDIGcGtG~lt~~La~~~--~~V~avDid~~~i~~a~~~~~-------~~~~-~~~v~~ 109 (359)
+.++-+..+++.+.+.+++...|+|.|.|.+...++..+ ..=+|+|+....-+.+..+.. ..+- ...++.
T Consensus 176 ~~~~ql~si~dEl~~g~~D~F~DLGSGVGqlv~~~aa~a~~k~svG~eim~~pS~~a~~~~~~~kk~~k~fGk~~~~~~~ 255 (419)
T KOG3924|consen 176 TQLEQLRSIVDELKLGPADVFMDLGSGVGQLVCFVAAYAGCKKSVGFEIMDKPSQCAELNKEEFKKLMKHFGKKPNKIET 255 (419)
T ss_pred hhHHHHHHHHHHhccCCCCcccCCCcccchhhHHHHHhhccccccceeeecCcHHHHHHHHHHHHHHHHHhCCCcCceee
Confidence 356777889999999999999999999999988887653 567888887665555433221 1111 135788
Q ss_pred EEccccCCCC-----CCCcccccc
Q 018261 110 IQGDVLKTDL-----PYFDICVAN 128 (359)
Q Consensus 110 i~~D~~~~~l-----~~fD~VvsN 128 (359)
+++++..... ...++|++|
T Consensus 256 i~gsf~~~~~v~eI~~eatvi~vN 279 (419)
T KOG3924|consen 256 IHGSFLDPKRVTEIQTEATVIFVN 279 (419)
T ss_pred cccccCCHHHHHHHhhcceEEEEe
Confidence 8999886432 135566665
No 388
>PRK06182 short chain dehydrogenase; Validated
Probab=64.25 E-value=1.1e+02 Score=28.06 Aligned_cols=67 Identities=21% Similarity=0.229 Sum_probs=43.5
Q ss_pred CCEEEEEcCcccHHHH----HHHHcCCeEEEEeCCHHHHHHHHHHhhcCCCCCCeEEEEccccCCC------------CC
Q 018261 57 TDVILEIGPGTGNLTK----KLLEAGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTD------------LP 120 (359)
Q Consensus 57 ~~~VLDIGcGtG~lt~----~La~~~~~V~avDid~~~i~~a~~~~~~~~~~~~v~~i~~D~~~~~------------l~ 120 (359)
+.+||=.|++. .++. .|++.|.+|++++.++.-+..+.. .++.++.+|+.+.. ..
T Consensus 3 ~k~vlItGasg-giG~~la~~l~~~G~~V~~~~r~~~~l~~~~~--------~~~~~~~~Dv~~~~~~~~~~~~~~~~~~ 73 (273)
T PRK06182 3 KKVALVTGASS-GIGKATARRLAAQGYTVYGAARRVDKMEDLAS--------LGVHPLSLDVTDEASIKAAVDTIIAEEG 73 (273)
T ss_pred CCEEEEECCCC-hHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHh--------CCCeEEEeeCCCHHHHHHHHHHHHHhcC
Confidence 45788788644 4444 445558999999988765443321 14778888887632 12
Q ss_pred CCcccccccccc
Q 018261 121 YFDICVANIPYQ 132 (359)
Q Consensus 121 ~fD~VvsNlPy~ 132 (359)
..|.+|.|..+.
T Consensus 74 ~id~li~~ag~~ 85 (273)
T PRK06182 74 RIDVLVNNAGYG 85 (273)
T ss_pred CCCEEEECCCcC
Confidence 468888887654
No 389
>PRK07035 short chain dehydrogenase; Provisional
Probab=64.07 E-value=37 Score=30.75 Aligned_cols=74 Identities=16% Similarity=0.200 Sum_probs=49.8
Q ss_pred CCCEEEEEcCccc---HHHHHHHHcCCeEEEEeCCHHHHHHHHHHhhcCCCCCCeEEEEccccCCC------------CC
Q 018261 56 STDVILEIGPGTG---NLTKKLLEAGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTD------------LP 120 (359)
Q Consensus 56 ~~~~VLDIGcGtG---~lt~~La~~~~~V~avDid~~~i~~a~~~~~~~~~~~~v~~i~~D~~~~~------------l~ 120 (359)
.+.+||=.|++.| .++..|++.|.+|+.++.++.-++.+.+.+...+ .++.++..|+.+.. ++
T Consensus 7 ~~k~vlItGas~gIG~~l~~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 84 (252)
T PRK07035 7 TGKIALVTGASRGIGEAIAKLLAQQGAHVIVSSRKLDGCQAVADAIVAAG--GKAEALACHIGEMEQIDALFAHIRERHG 84 (252)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CeEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 3567888898766 3555666678999999998776666655554332 25777888886532 13
Q ss_pred CCccccccccc
Q 018261 121 YFDICVANIPY 131 (359)
Q Consensus 121 ~fD~VvsNlPy 131 (359)
..|++|.|..+
T Consensus 85 ~id~li~~ag~ 95 (252)
T PRK07035 85 RLDILVNNAAA 95 (252)
T ss_pred CCCEEEECCCc
Confidence 46888876643
No 390
>PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated
Probab=63.76 E-value=1.1e+02 Score=27.82 Aligned_cols=72 Identities=24% Similarity=0.279 Sum_probs=42.9
Q ss_pred CCCEEEEEcCcccH---HHHHHHHcCCeEEEEeCCHHHHHHHHHHhhcCCCCCCeEEEEccccCCC------------CC
Q 018261 56 STDVILEIGPGTGN---LTKKLLEAGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTD------------LP 120 (359)
Q Consensus 56 ~~~~VLDIGcGtG~---lt~~La~~~~~V~avDid~~~i~~a~~~~~~~~~~~~v~~i~~D~~~~~------------l~ 120 (359)
.+.++|=.|+..|. +...|++.|++|++++.+.. ..+.+.+...+ .++..+..|+.+.. ++
T Consensus 9 ~~k~~lItG~~~gIG~a~a~~l~~~G~~vv~~~~~~~--~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 84 (253)
T PRK08993 9 EGKVAVVTGCDTGLGQGMALGLAEAGCDIVGINIVEP--TETIEQVTALG--RRFLSLTADLRKIDGIPALLERAVAEFG 84 (253)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCEEEEecCcch--HHHHHHHHhcC--CeEEEEECCCCCHHHHHHHHHHHHHHhC
Confidence 35688888875542 44455556899999987642 22222222222 25778888886531 13
Q ss_pred CCccccccccc
Q 018261 121 YFDICVANIPY 131 (359)
Q Consensus 121 ~fD~VvsNlPy 131 (359)
..|++|.|.-+
T Consensus 85 ~~D~li~~Ag~ 95 (253)
T PRK08993 85 HIDILVNNAGL 95 (253)
T ss_pred CCCEEEECCCC
Confidence 46888877543
No 391
>PRK12829 short chain dehydrogenase; Provisional
Probab=63.40 E-value=46 Score=30.24 Aligned_cols=72 Identities=17% Similarity=0.225 Sum_probs=48.1
Q ss_pred CCCCEEEEEcCcccHHHHHH----HHcCCeEEEEeCCHHHHHHHHHHhhcCCCCCCeEEEEccccCCC------------
Q 018261 55 KSTDVILEIGPGTGNLTKKL----LEAGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTD------------ 118 (359)
Q Consensus 55 ~~~~~VLDIGcGtG~lt~~L----a~~~~~V~avDid~~~i~~a~~~~~~~~~~~~v~~i~~D~~~~~------------ 118 (359)
.++.++|=.|++ |.++..+ ++.+.+|++++.++...+.+.+..... ++.++.+|+.+..
T Consensus 9 ~~~~~vlItGa~-g~iG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~----~~~~~~~D~~~~~~~~~~~~~~~~~ 83 (264)
T PRK12829 9 LDGLRVLVTGGA-SGIGRAIAEAFAEAGARVHVCDVSEAALAATAARLPGA----KVTATVADVADPAQVERVFDTAVER 83 (264)
T ss_pred cCCCEEEEeCCC-CcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhcC----ceEEEEccCCCHHHHHHHHHHHHHH
Confidence 467899988875 5555544 445889999999987766554443221 5678889887532
Q ss_pred CCCCccccccccc
Q 018261 119 LPYFDICVANIPY 131 (359)
Q Consensus 119 l~~fD~VvsNlPy 131 (359)
+..+|.||.+...
T Consensus 84 ~~~~d~vi~~ag~ 96 (264)
T PRK12829 84 FGGLDVLVNNAGI 96 (264)
T ss_pred hCCCCEEEECCCC
Confidence 1246888876643
No 392
>PRK06841 short chain dehydrogenase; Provisional
Probab=63.19 E-value=1.2e+02 Score=27.44 Aligned_cols=72 Identities=17% Similarity=0.172 Sum_probs=46.4
Q ss_pred CCCEEEEEcCccc---HHHHHHHHcCCeEEEEeCCHHHHHHHHHHhhcCCCCCCeEEEEccccCCC------------CC
Q 018261 56 STDVILEIGPGTG---NLTKKLLEAGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTD------------LP 120 (359)
Q Consensus 56 ~~~~VLDIGcGtG---~lt~~La~~~~~V~avDid~~~i~~a~~~~~~~~~~~~v~~i~~D~~~~~------------l~ 120 (359)
.+.+||=.|++.| .++..|++.|.+|+.++.++.....+.+. .. .++.++..|+.+.. +.
T Consensus 14 ~~k~vlItGas~~IG~~la~~l~~~G~~Vi~~~r~~~~~~~~~~~-~~----~~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 88 (255)
T PRK06841 14 SGKVAVVTGGASGIGHAIAELFAAKGARVALLDRSEDVAEVAAQL-LG----GNAKGLVCDVSDSQSVEAAVAAVISAFG 88 (255)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHh-hC----CceEEEEecCCCHHHHHHHHHHHHHHhC
Confidence 4578888886554 24455666789999999988754443332 11 25678888887532 12
Q ss_pred CCcccccccccc
Q 018261 121 YFDICVANIPYQ 132 (359)
Q Consensus 121 ~fD~VvsNlPy~ 132 (359)
.+|.+|.|..+.
T Consensus 89 ~~d~vi~~ag~~ 100 (255)
T PRK06841 89 RIDILVNSAGVA 100 (255)
T ss_pred CCCEEEECCCCC
Confidence 468888876543
No 393
>PRK07774 short chain dehydrogenase; Provisional
Probab=62.79 E-value=45 Score=30.07 Aligned_cols=73 Identities=18% Similarity=0.278 Sum_probs=47.0
Q ss_pred CCCEEEEEcCcccHHHH----HHHHcCCeEEEEeCCHHHHHHHHHHhhcCCCCCCeEEEEccccCCC------------C
Q 018261 56 STDVILEIGPGTGNLTK----KLLEAGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTD------------L 119 (359)
Q Consensus 56 ~~~~VLDIGcGtG~lt~----~La~~~~~V~avDid~~~i~~a~~~~~~~~~~~~v~~i~~D~~~~~------------l 119 (359)
.+.++|=.|+ +|.++. .|++.+.+|+.++.++.-...+...+...+ .++.++..|+.+.. +
T Consensus 5 ~~k~vlItGa-sg~iG~~la~~l~~~g~~vi~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 81 (250)
T PRK07774 5 DDKVAIVTGA-AGGIGQAYAEALAREGASVVVADINAEGAERVAKQIVADG--GTAIAVQVDVSDPDSAKAMADATVSAF 81 (250)
T ss_pred CCCEEEEECC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEcCCCCHHHHHHHHHHHHHHh
Confidence 3567888884 444444 445568999999998766555544443222 25677888887643 1
Q ss_pred CCCccccccccc
Q 018261 120 PYFDICVANIPY 131 (359)
Q Consensus 120 ~~fD~VvsNlPy 131 (359)
+..|.||.|..+
T Consensus 82 ~~id~vi~~ag~ 93 (250)
T PRK07774 82 GGIDYLVNNAAI 93 (250)
T ss_pred CCCCEEEECCCC
Confidence 347888887654
No 394
>PRK07890 short chain dehydrogenase; Provisional
Probab=62.47 E-value=42 Score=30.45 Aligned_cols=73 Identities=21% Similarity=0.256 Sum_probs=48.5
Q ss_pred CCCEEEEEcCccc---HHHHHHHHcCCeEEEEeCCHHHHHHHHHHhhcCCCCCCeEEEEccccCCC------------CC
Q 018261 56 STDVILEIGPGTG---NLTKKLLEAGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTD------------LP 120 (359)
Q Consensus 56 ~~~~VLDIGcGtG---~lt~~La~~~~~V~avDid~~~i~~a~~~~~~~~~~~~v~~i~~D~~~~~------------l~ 120 (359)
.+.+||=.|++.| .++..|+++|.+|+.++.++.-.+.+.+.+...+ .++.++..|+.+.. +.
T Consensus 4 ~~k~vlItGa~~~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~g 81 (258)
T PRK07890 4 KGKVVVVSGVGPGLGRTLAVRAARAGADVVLAARTAERLDEVAAEIDDLG--RRALAVPTDITDEDQCANLVALALERFG 81 (258)
T ss_pred CCCEEEEECCCCcHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHhC--CceEEEecCCCCHHHHHHHHHHHHHHcC
Confidence 4567887786544 2444556668999999999877666665554332 26788999986532 13
Q ss_pred CCcccccccc
Q 018261 121 YFDICVANIP 130 (359)
Q Consensus 121 ~fD~VvsNlP 130 (359)
..|.||.|.-
T Consensus 82 ~~d~vi~~ag 91 (258)
T PRK07890 82 RVDALVNNAF 91 (258)
T ss_pred CccEEEECCc
Confidence 4688877753
No 395
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=62.32 E-value=1.4e+02 Score=28.26 Aligned_cols=117 Identities=18% Similarity=0.221 Sum_probs=72.3
Q ss_pred CCCEEEEEcCccc---HHHHHHHHcCCeEEEEeCCHHHHHHHHHHhhcCCCCCCeEEEEccccCCCC------------C
Q 018261 56 STDVILEIGPGTG---NLTKKLLEAGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTDL------------P 120 (359)
Q Consensus 56 ~~~~VLDIGcGtG---~lt~~La~~~~~V~avDid~~~i~~a~~~~~~~~~~~~v~~i~~D~~~~~l------------~ 120 (359)
...++|=-|.-+| .++..|+++|.+|+.|--+.+-+..+.+.+.... .-.+.++..|..+.+- .
T Consensus 5 ~~~~~lITGASsGIG~~~A~~lA~~g~~liLvaR~~~kL~~la~~l~~~~-~v~v~vi~~DLs~~~~~~~l~~~l~~~~~ 83 (265)
T COG0300 5 KGKTALITGASSGIGAELAKQLARRGYNLILVARREDKLEALAKELEDKT-GVEVEVIPADLSDPEALERLEDELKERGG 83 (265)
T ss_pred CCcEEEEECCCchHHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHHHHHhh-CceEEEEECcCCChhHHHHHHHHHHhcCC
Confidence 4567787787666 3667777789999999999998888877776432 1267899999877531 1
Q ss_pred CCcccccccccccchHHHHHHHhcCc-hh---hHHHHHHHHHHHHHHhccCCCeeEE
Q 018261 121 YFDICVANIPYQISSPLTFKLLFHQP-AF---RCAIIMFQKEFAMRLVAQPGDKLYC 173 (359)
Q Consensus 121 ~fD~VvsNlPy~i~s~ii~~ll~~~~-~~---~~~~~~~qkE~a~Rlv~kpGg~~y~ 173 (359)
..|++|-|.=|....++...-+.... .+ -.++..+.+.+..+++.+.+|.+..
T Consensus 84 ~IdvLVNNAG~g~~g~f~~~~~~~~~~mi~lN~~a~~~LT~~~lp~m~~~~~G~IiN 140 (265)
T COG0300 84 PIDVLVNNAGFGTFGPFLELSLDEEEEMIQLNILALTRLTKAVLPGMVERGAGHIIN 140 (265)
T ss_pred cccEEEECCCcCCccchhhCChHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEE
Confidence 47888888766655443211111000 00 1222333455666666666666543
No 396
>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase. This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.
Probab=62.27 E-value=1.2e+02 Score=27.24 Aligned_cols=72 Identities=24% Similarity=0.312 Sum_probs=45.4
Q ss_pred CCCEEEEEcCccc---HHHHHHHHcCCeEEEEeCCHHHHHHHHHHhhcCCCCCCeEEEEccccCCC------------CC
Q 018261 56 STDVILEIGPGTG---NLTKKLLEAGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTD------------LP 120 (359)
Q Consensus 56 ~~~~VLDIGcGtG---~lt~~La~~~~~V~avDid~~~i~~a~~~~~~~~~~~~v~~i~~D~~~~~------------l~ 120 (359)
.+.+||=.|++.| .+...|++.|.+|+.++.++. ..+.+.+...+ .++.++.+|+.+.. .+
T Consensus 4 ~~k~vlItGas~gIG~~ia~~l~~~G~~vi~~~r~~~--~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 79 (248)
T TIGR01832 4 EGKVALVTGANTGLGQGIAVGLAEAGADIVGAGRSEP--SETQQQVEALG--RRFLSLTADLSDIEAIKALVDSAVEEFG 79 (248)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCchH--HHHHHHHHhcC--CceEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 4678888898654 245556666899999987652 22333333222 36888899987642 12
Q ss_pred CCccccccccc
Q 018261 121 YFDICVANIPY 131 (359)
Q Consensus 121 ~fD~VvsNlPy 131 (359)
..|.+|.|.-+
T Consensus 80 ~~d~li~~ag~ 90 (248)
T TIGR01832 80 HIDILVNNAGI 90 (248)
T ss_pred CCCEEEECCCC
Confidence 47888877644
No 397
>PRK07024 short chain dehydrogenase; Provisional
Probab=61.95 E-value=39 Score=30.86 Aligned_cols=70 Identities=20% Similarity=0.284 Sum_probs=46.1
Q ss_pred CEEEEEcCccc---HHHHHHHHcCCeEEEEeCCHHHHHHHHHHhhcCCCCCCeEEEEccccCCC------------CCCC
Q 018261 58 DVILEIGPGTG---NLTKKLLEAGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTD------------LPYF 122 (359)
Q Consensus 58 ~~VLDIGcGtG---~lt~~La~~~~~V~avDid~~~i~~a~~~~~~~~~~~~v~~i~~D~~~~~------------l~~f 122 (359)
.+||=.|+..| .++..|++.|.+|+.++.+++.+..+.+.+.... ++.++.+|+.+.. .+..
T Consensus 3 ~~vlItGas~gIG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~---~~~~~~~Dl~~~~~i~~~~~~~~~~~g~i 79 (257)
T PRK07024 3 LKVFITGASSGIGQALAREYARQGATLGLVARRTDALQAFAARLPKAA---RVSVYAADVRDADALAAAAADFIAAHGLP 79 (257)
T ss_pred CEEEEEcCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhcccCC---eeEEEEcCCCCHHHHHHHHHHHHHhCCCC
Confidence 46777786443 2445556668999999999877666555443222 6888999987632 1236
Q ss_pred cccccccc
Q 018261 123 DICVANIP 130 (359)
Q Consensus 123 D~VvsNlP 130 (359)
|++|.|.-
T Consensus 80 d~lv~~ag 87 (257)
T PRK07024 80 DVVIANAG 87 (257)
T ss_pred CEEEECCC
Confidence 88887753
No 398
>PRK06114 short chain dehydrogenase; Provisional
Probab=61.25 E-value=1.3e+02 Score=27.31 Aligned_cols=73 Identities=22% Similarity=0.314 Sum_probs=44.3
Q ss_pred CCCEEEEEcCcccHHHHH----HHHcCCeEEEEeCCHH-HHHHHHHHhhcCCCCCCeEEEEccccCCC------------
Q 018261 56 STDVILEIGPGTGNLTKK----LLEAGKMVIAVELDSR-MVLELQRRFQSTPYSNRLKVIQGDVLKTD------------ 118 (359)
Q Consensus 56 ~~~~VLDIGcGtG~lt~~----La~~~~~V~avDid~~-~i~~a~~~~~~~~~~~~v~~i~~D~~~~~------------ 118 (359)
.+.++|=.|.+.| ++.. |++.|.+|+.++.+.. .+..+.+.+...+ .++.++.+|+.+..
T Consensus 7 ~~k~~lVtG~s~g-IG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~i~~~~~~~~~~ 83 (254)
T PRK06114 7 DGQVAFVTGAGSG-IGQRIAIGLAQAGADVALFDLRTDDGLAETAEHIEAAG--RRAIQIAADVTSKADLRAAVARTEAE 83 (254)
T ss_pred CCCEEEEECCCch-HHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHhcC--CceEEEEcCCCCHHHHHHHHHHHHHH
Confidence 4567888885544 4444 4555889999997642 2333333333322 26778888987532
Q ss_pred CCCCccccccccc
Q 018261 119 LPYFDICVANIPY 131 (359)
Q Consensus 119 l~~fD~VvsNlPy 131 (359)
+...|.+|.|.-+
T Consensus 84 ~g~id~li~~ag~ 96 (254)
T PRK06114 84 LGALTLAVNAAGI 96 (254)
T ss_pred cCCCCEEEECCCC
Confidence 1246888887654
No 399
>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated
Probab=61.09 E-value=45 Score=30.36 Aligned_cols=73 Identities=18% Similarity=0.263 Sum_probs=48.9
Q ss_pred CCCEEEEEcCccc---HHHHHHHHcCCeEEEEeCCHHHHHHHHHHhhcCCCCCCeEEEEccccCCC------------CC
Q 018261 56 STDVILEIGPGTG---NLTKKLLEAGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTD------------LP 120 (359)
Q Consensus 56 ~~~~VLDIGcGtG---~lt~~La~~~~~V~avDid~~~i~~a~~~~~~~~~~~~v~~i~~D~~~~~------------l~ 120 (359)
.+.+||=.|++.| .+...|++.+.+|+.++.+....+.+...+...+ .++.++.+|+.+.. +.
T Consensus 10 ~~k~vlVtG~s~gIG~~la~~l~~~G~~vv~~~r~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~i~~~~~~~~~~~~ 87 (255)
T PRK06113 10 DGKCAIITGAGAGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQLG--GQAFACRCDITSEQELSALADFALSKLG 87 (255)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 4678999996655 2444566668999999988877766655544332 26778889987542 12
Q ss_pred CCcccccccc
Q 018261 121 YFDICVANIP 130 (359)
Q Consensus 121 ~fD~VvsNlP 130 (359)
.+|.+|.|..
T Consensus 88 ~~d~li~~ag 97 (255)
T PRK06113 88 KVDILVNNAG 97 (255)
T ss_pred CCCEEEECCC
Confidence 4677777654
No 400
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=61.04 E-value=19 Score=37.47 Aligned_cols=43 Identities=16% Similarity=0.211 Sum_probs=34.6
Q ss_pred CCCCCEEEEEcCccc-HHHHHHHHc-CCeEEEEeCCHHHHHHHHH
Q 018261 54 IKSTDVILEIGPGTG-NLTKKLLEA-GKMVIAVELDSRMVLELQR 96 (359)
Q Consensus 54 ~~~~~~VLDIGcGtG-~lt~~La~~-~~~V~avDid~~~i~~a~~ 96 (359)
..++++|+=+|||.= ..+...++. |+.|+++|.+++.++.+++
T Consensus 162 ~~pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~rle~aes 206 (509)
T PRK09424 162 KVPPAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPEVAEQVES 206 (509)
T ss_pred CcCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 457899999999974 455555554 7899999999999888877
No 401
>PRK06505 enoyl-(acyl carrier protein) reductase; Provisional
Probab=60.80 E-value=35 Score=31.82 Aligned_cols=72 Identities=17% Similarity=0.088 Sum_probs=45.5
Q ss_pred CCCEEEEEcCcc--c---HHHHHHHHcCCeEEEEeCCHHHHHHHHHHhhcCCCCCCeEEEEccccCCC------------
Q 018261 56 STDVILEIGPGT--G---NLTKKLLEAGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTD------------ 118 (359)
Q Consensus 56 ~~~~VLDIGcGt--G---~lt~~La~~~~~V~avDid~~~i~~a~~~~~~~~~~~~v~~i~~D~~~~~------------ 118 (359)
.+.++|=.|++. | .++..|++.|++|+.++.+....+.+++.....+ ...++.+|+.+..
T Consensus 6 ~~k~~lVTGas~~~GIG~aiA~~la~~Ga~V~~~~r~~~~~~~~~~~~~~~g---~~~~~~~Dv~d~~~v~~~~~~~~~~ 82 (271)
T PRK06505 6 QGKRGLIMGVANDHSIAWGIAKQLAAQGAELAFTYQGEALGKRVKPLAESLG---SDFVLPCDVEDIASVDAVFEALEKK 82 (271)
T ss_pred CCCEEEEeCCCCCCcHHHHHHHHHHhCCCEEEEecCchHHHHHHHHHHHhcC---CceEEeCCCCCHHHHHHHHHHHHHH
Confidence 457888888764 3 4666777789999998877544333333322222 2346788887642
Q ss_pred CCCCcccccccc
Q 018261 119 LPYFDICVANIP 130 (359)
Q Consensus 119 l~~fD~VvsNlP 130 (359)
+...|++|.|.-
T Consensus 83 ~g~iD~lVnnAG 94 (271)
T PRK06505 83 WGKLDFVVHAIG 94 (271)
T ss_pred hCCCCEEEECCc
Confidence 235788888764
No 402
>PF04378 RsmJ: Ribosomal RNA small subunit methyltransferase D, RsmJ; InterPro: IPR007473 This is a bacterial protein of unknown function, possibly secreted.; PDB: 2OO3_A.
Probab=60.71 E-value=13 Score=34.91 Aligned_cols=74 Identities=22% Similarity=0.381 Sum_probs=46.0
Q ss_pred EEEcCcccHHHHHHHHcCCeEEEEeCCHHHHHHHHHHhhcCCCCCCeEEEEccccCC---CCC---CCcccccccccccc
Q 018261 61 LEIGPGTGNLTKKLLEAGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKT---DLP---YFDICVANIPYQIS 134 (359)
Q Consensus 61 LDIGcGtG~lt~~La~~~~~V~avDid~~~i~~a~~~~~~~~~~~~v~~i~~D~~~~---~l~---~fD~VvsNlPy~i~ 134 (359)
|..=||+=.++..+++..-+.+.+|+-+.-.+.+++++.... ++.+.+.|..+. -+| .--+|+..+||...
T Consensus 62 l~~YPGSP~ia~~llR~qDrl~l~ELHp~d~~~L~~~~~~~~---~v~v~~~DG~~~l~allPP~~rRglVLIDPpYE~~ 138 (245)
T PF04378_consen 62 LRFYPGSPAIAARLLREQDRLVLFELHPQDFEALKKNFRRDR---RVRVHHRDGYEGLKALLPPPERRGLVLIDPPYEQK 138 (245)
T ss_dssp --EEE-HHHHHHHHS-TTSEEEEE--SHHHHHHHTTS--TTS----EEEE-S-HHHHHHHH-S-TTS-EEEEE-----ST
T ss_pred cCcCCCCHHHHHHhCCccceEEEEecCchHHHHHHHHhccCC---ccEEEeCchhhhhhhhCCCCCCCeEEEECCCCCCc
Confidence 788999999999999888999999999999999998887643 899999998762 122 23479999999887
Q ss_pred hHH
Q 018261 135 SPL 137 (359)
Q Consensus 135 s~i 137 (359)
++.
T Consensus 139 ~dy 141 (245)
T PF04378_consen 139 DDY 141 (245)
T ss_dssp THH
T ss_pred hHH
Confidence 654
No 403
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=60.60 E-value=32 Score=31.02 Aligned_cols=42 Identities=29% Similarity=0.419 Sum_probs=33.9
Q ss_pred CCCCEEEEEcCcc-cHHHHHHHHc-CCeEEEEeCCHHHHHHHHH
Q 018261 55 KSTDVILEIGPGT-GNLTKKLLEA-GKMVIAVELDSRMVLELQR 96 (359)
Q Consensus 55 ~~~~~VLDIGcGt-G~lt~~La~~-~~~V~avDid~~~i~~a~~ 96 (359)
.++.+||-.|+|+ |..+..+++. +.+|++++.++...+.+++
T Consensus 133 ~~~~~vli~g~~~~G~~~~~~a~~~g~~v~~~~~~~~~~~~~~~ 176 (271)
T cd05188 133 KPGDTVLVLGAGGVGLLAAQLAKAAGARVIVTDRSDEKLELAKE 176 (271)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHH
Confidence 6788999999985 6666667665 7899999999888777754
No 404
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=60.52 E-value=49 Score=29.71 Aligned_cols=72 Identities=14% Similarity=0.192 Sum_probs=46.8
Q ss_pred CCCEEEEEcCcccHHHH----HHHHcCCeEEEEeCCHHHHHHHHHHhhcCCCCCCeEEEEccccCCC------------C
Q 018261 56 STDVILEIGPGTGNLTK----KLLEAGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTD------------L 119 (359)
Q Consensus 56 ~~~~VLDIGcGtG~lt~----~La~~~~~V~avDid~~~i~~a~~~~~~~~~~~~v~~i~~D~~~~~------------l 119 (359)
++.++|=+|++ |.++. .|++.+.+|+.++.++.-++.+.+.+...+ .++.++..|+.+.. .
T Consensus 4 ~~~~~lItG~~-g~iG~~~a~~l~~~G~~vi~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~ 80 (253)
T PRK08217 4 KDKVIVITGGA-QGLGRAMAEYLAQKGAKLALIDLNQEKLEEAVAECGALG--TEVRGYAANVTDEEDVEATFAQIAEDF 80 (253)
T ss_pred CCCEEEEECCC-chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CceEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 45788888863 33343 445558899999999876665555544332 36788888876531 1
Q ss_pred CCCcccccccc
Q 018261 120 PYFDICVANIP 130 (359)
Q Consensus 120 ~~fD~VvsNlP 130 (359)
..+|.||.|..
T Consensus 81 ~~id~vi~~ag 91 (253)
T PRK08217 81 GQLNGLINNAG 91 (253)
T ss_pred CCCCEEEECCC
Confidence 24688887754
No 405
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=60.20 E-value=8.7 Score=34.24 Aligned_cols=37 Identities=38% Similarity=0.481 Sum_probs=22.0
Q ss_pred EEEEcCcccH--HHHHHHHcCCeEEEEeCCHHHHHHHHH
Q 018261 60 ILEIGPGTGN--LTKKLLEAGKMVIAVELDSRMVLELQR 96 (359)
Q Consensus 60 VLDIGcGtG~--lt~~La~~~~~V~avDid~~~i~~a~~ 96 (359)
|-=||.|-=. ++..|++.|.+|+|+|++++.++.+++
T Consensus 3 I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~~~v~~l~~ 41 (185)
T PF03721_consen 3 IAVIGLGYVGLPLAAALAEKGHQVIGVDIDEEKVEALNN 41 (185)
T ss_dssp EEEE--STTHHHHHHHHHHTTSEEEEE-S-HHHHHHHHT
T ss_pred EEEECCCcchHHHHHHHHhCCCEEEEEeCChHHHHHHhh
Confidence 3345554322 334455668999999999998887764
No 406
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=60.12 E-value=45 Score=31.45 Aligned_cols=64 Identities=22% Similarity=0.217 Sum_probs=39.2
Q ss_pred EEEEEcCcc--cHHHHHHHHcCCeEEEEeCCHHHHHHHHHHhhcCCCCCCeEEEEccccCCCCCCCccccccccc
Q 018261 59 VILEIGPGT--GNLTKKLLEAGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTDLPYFDICVANIPY 131 (359)
Q Consensus 59 ~VLDIGcGt--G~lt~~La~~~~~V~avDid~~~i~~a~~~~~~~~~~~~v~~i~~D~~~~~l~~fD~VvsNlPy 131 (359)
+|.=||+|. |.++..|.+.+.+|+++|.++..++.+.+. + .+.....+.. .....|+||...|.
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~g~~V~~~d~~~~~~~~a~~~----g---~~~~~~~~~~--~~~~aDlVilavp~ 67 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSLGHTVYGVSRRESTCERAIER----G---LVDEASTDLS--LLKDCDLVILALPI 67 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHC----C---CcccccCCHh--HhcCCCEEEEcCCH
Confidence 355578775 456667777788999999999887776553 1 1111111211 12357888877763
No 407
>PRK07984 enoyl-(acyl carrier protein) reductase; Provisional
Probab=59.88 E-value=40 Score=31.34 Aligned_cols=73 Identities=18% Similarity=0.198 Sum_probs=46.3
Q ss_pred CCCEEEEEcCcc----c-HHHHHHHHcCCeEEEEeCCHHHHHHHHHHhhcCCCCCCeEEEEccccCCC------------
Q 018261 56 STDVILEIGPGT----G-NLTKKLLEAGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTD------------ 118 (359)
Q Consensus 56 ~~~~VLDIGcGt----G-~lt~~La~~~~~V~avDid~~~i~~a~~~~~~~~~~~~v~~i~~D~~~~~------------ 118 (359)
.+.++|=.|.+. | .++..|++.|++|+.++.+....+.+.+.....+ .+.++.+|+.+..
T Consensus 5 ~~k~~lITGas~~~GIG~aia~~la~~G~~vil~~r~~~~~~~~~~~~~~~~---~~~~~~~Dl~~~~~v~~~~~~~~~~ 81 (262)
T PRK07984 5 SGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQNDKLKGRVEEFAAQLG---SDIVLPCDVAEDASIDAMFAELGKV 81 (262)
T ss_pred CCCEEEEeCCCCCccHHHHHHHHHHHCCCEEEEEecchhHHHHHHHHHhccC---CceEeecCCCCHHHHHHHHHHHHhh
Confidence 456788889864 3 3566777778999988877543333333322222 4567788887632
Q ss_pred CCCCccccccccc
Q 018261 119 LPYFDICVANIPY 131 (359)
Q Consensus 119 l~~fD~VvsNlPy 131 (359)
+..+|++|.|.-+
T Consensus 82 ~g~iD~linnAg~ 94 (262)
T PRK07984 82 WPKFDGFVHSIGF 94 (262)
T ss_pred cCCCCEEEECCcc
Confidence 2357998888754
No 408
>PRK06500 short chain dehydrogenase; Provisional
Probab=59.77 E-value=47 Score=29.85 Aligned_cols=71 Identities=17% Similarity=0.186 Sum_probs=45.3
Q ss_pred CCCEEEEEcCccc---HHHHHHHHcCCeEEEEeCCHHHHHHHHHHhhcCCCCCCeEEEEccccCCC------------CC
Q 018261 56 STDVILEIGPGTG---NLTKKLLEAGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTD------------LP 120 (359)
Q Consensus 56 ~~~~VLDIGcGtG---~lt~~La~~~~~V~avDid~~~i~~a~~~~~~~~~~~~v~~i~~D~~~~~------------l~ 120 (359)
++.+||=.|++.| .++..|++.+.+|++++.++..+..+.+.+ + .++.++.+|..+.. .+
T Consensus 5 ~~k~vlItGasg~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~---~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 79 (249)
T PRK06500 5 QGKTALITGGTSGIGLETARQFLAEGARVAITGRDPASLEAARAEL---G--ESALVIRADAGDVAAQKALAQALAEAFG 79 (249)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHh---C--CceEEEEecCCCHHHHHHHHHHHHHHhC
Confidence 3567777786543 244555666899999998876555444433 1 25777888876532 13
Q ss_pred CCccccccccc
Q 018261 121 YFDICVANIPY 131 (359)
Q Consensus 121 ~fD~VvsNlPy 131 (359)
.+|.+|.|..+
T Consensus 80 ~id~vi~~ag~ 90 (249)
T PRK06500 80 RLDAVFINAGV 90 (249)
T ss_pred CCCEEEECCCC
Confidence 56888877654
No 409
>PLN02253 xanthoxin dehydrogenase
Probab=59.45 E-value=46 Score=30.78 Aligned_cols=71 Identities=20% Similarity=0.214 Sum_probs=46.3
Q ss_pred CCCEEEEEcCcccHHHH----HHHHcCCeEEEEeCCHHHHHHHHHHhhcCCCCCCeEEEEccccCCC------------C
Q 018261 56 STDVILEIGPGTGNLTK----KLLEAGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTD------------L 119 (359)
Q Consensus 56 ~~~~VLDIGcGtG~lt~----~La~~~~~V~avDid~~~i~~a~~~~~~~~~~~~v~~i~~D~~~~~------------l 119 (359)
.+.++|=.|+. |.++. .|++.|.+|+.++.++...+.+.+.+... .++.++.+|+.+.. +
T Consensus 17 ~~k~~lItGas-~gIG~~la~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~---~~~~~~~~Dl~d~~~~~~~~~~~~~~~ 92 (280)
T PLN02253 17 LGKVALVTGGA-TGIGESIVRLFHKHGAKVCIVDLQDDLGQNVCDSLGGE---PNVCFFHCDVTVEDDVSRAVDFTVDKF 92 (280)
T ss_pred CCCEEEEECCC-chHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCC---CceEEEEeecCCHHHHHHHHHHHHHHh
Confidence 35678888854 44444 45556899999999877666555544321 26888999987642 1
Q ss_pred CCCcccccccc
Q 018261 120 PYFDICVANIP 130 (359)
Q Consensus 120 ~~fD~VvsNlP 130 (359)
+..|.+|.|.-
T Consensus 93 g~id~li~~Ag 103 (280)
T PLN02253 93 GTLDIMVNNAG 103 (280)
T ss_pred CCCCEEEECCC
Confidence 24687777653
No 410
>PF07669 Eco57I: Eco57I restriction-modification methylase; InterPro: IPR011639 This entry contains restriction modification methylases, which in the case of endonuclease Eco57I is found adjacent to the DNA cleavage domain, which recognises asymmetric DNA sequence 5'-CTGAAG [, ]. The methylase causes specific methylation on A-5 on one strand, the other strand being methylated by the Eco57IB methylase []. ; GO: 0003677 DNA binding, 0003824 catalytic activity, 0006304 DNA modification
Probab=59.40 E-value=3.9 Score=33.00 Aligned_cols=15 Identities=33% Similarity=0.605 Sum_probs=12.8
Q ss_pred CCcccccccccccch
Q 018261 121 YFDICVANIPYQISS 135 (359)
Q Consensus 121 ~fD~VvsNlPy~i~s 135 (359)
.||+||+|+||.-..
T Consensus 2 kFD~VIGNPPY~~~~ 16 (106)
T PF07669_consen 2 KFDVVIGNPPYIKIK 16 (106)
T ss_pred CcCEEEECCCChhhc
Confidence 489999999998654
No 411
>PRK05855 short chain dehydrogenase; Validated
Probab=59.25 E-value=1.5e+02 Score=30.32 Aligned_cols=73 Identities=19% Similarity=0.243 Sum_probs=48.5
Q ss_pred CCEEEEEcCccc---HHHHHHHHcCCeEEEEeCCHHHHHHHHHHhhcCCCCCCeEEEEccccCCC------------CCC
Q 018261 57 TDVILEIGPGTG---NLTKKLLEAGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTD------------LPY 121 (359)
Q Consensus 57 ~~~VLDIGcGtG---~lt~~La~~~~~V~avDid~~~i~~a~~~~~~~~~~~~v~~i~~D~~~~~------------l~~ 121 (359)
+.++|=+|+..| .++..|++.|.+|+.++.+..-.+.+.+.+...+ .++.++.+|+.+.. .+.
T Consensus 315 ~~~~lv~G~s~giG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~~~~~~~~~~~~~g~ 392 (582)
T PRK05855 315 GKLVVVTGAGSGIGRETALAFAREGAEVVASDIDEAAAERTAELIRAAG--AVAHAYRVDVSDADAMEAFAEWVRAEHGV 392 (582)
T ss_pred CCEEEEECCcCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CeEEEEEcCCCCHHHHHHHHHHHHHhcCC
Confidence 357887887433 2444556668999999999877666655554433 26888999987643 124
Q ss_pred Cccccccccc
Q 018261 122 FDICVANIPY 131 (359)
Q Consensus 122 fD~VvsNlPy 131 (359)
.|++|.|.-.
T Consensus 393 id~lv~~Ag~ 402 (582)
T PRK05855 393 PDIVVNNAGI 402 (582)
T ss_pred CcEEEECCcc
Confidence 6888887543
No 412
>PRK07201 short chain dehydrogenase; Provisional
Probab=58.98 E-value=1.5e+02 Score=31.33 Aligned_cols=73 Identities=22% Similarity=0.231 Sum_probs=49.2
Q ss_pred CCEEEEEcCccc---HHHHHHHHcCCeEEEEeCCHHHHHHHHHHhhcCCCCCCeEEEEccccCCC------------CCC
Q 018261 57 TDVILEIGPGTG---NLTKKLLEAGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTD------------LPY 121 (359)
Q Consensus 57 ~~~VLDIGcGtG---~lt~~La~~~~~V~avDid~~~i~~a~~~~~~~~~~~~v~~i~~D~~~~~------------l~~ 121 (359)
+.++|=.|.+.| .++..|++.|.+|++++.++.-++.+.+.+...+ .++.++.+|+.+.. ++.
T Consensus 371 ~k~vlItGas~giG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~~~~~~~~~~~~~g~ 448 (657)
T PRK07201 371 GKVVLITGASSGIGRATAIKVAEAGATVFLVARNGEALDELVAEIRAKG--GTAHAYTCDLTDSAAVDHTVKDILAEHGH 448 (657)
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC--CcEEEEEecCCCHHHHHHHHHHHHHhcCC
Confidence 567887886544 2444555668999999999887766655554332 26888999987632 124
Q ss_pred Cccccccccc
Q 018261 122 FDICVANIPY 131 (359)
Q Consensus 122 fD~VvsNlPy 131 (359)
.|++|.|.-+
T Consensus 449 id~li~~Ag~ 458 (657)
T PRK07201 449 VDYLVNNAGR 458 (657)
T ss_pred CCEEEECCCC
Confidence 6888887654
No 413
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=58.83 E-value=14 Score=39.37 Aligned_cols=64 Identities=19% Similarity=0.298 Sum_probs=43.7
Q ss_pred CCEEEEEcCccc-H-HHHHHHHcCCeEEEEeCCHHHHHHHHHHhhcCCCCCCeEEEEccccCCC------CCCCcccccc
Q 018261 57 TDVILEIGPGTG-N-LTKKLLEAGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTD------LPYFDICVAN 128 (359)
Q Consensus 57 ~~~VLDIGcGtG-~-lt~~La~~~~~V~avDid~~~i~~a~~~~~~~~~~~~v~~i~~D~~~~~------l~~fD~VvsN 128 (359)
..+|+=+|||.= . +.+.|.+.+..++.+|.|++.++.+++. ...++.||+.+.+ ....+.+++.
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~--------g~~v~~GDat~~~~L~~agi~~A~~vvv~ 471 (621)
T PRK03562 400 QPRVIIAGFGRFGQIVGRLLLSSGVKMTVLDHDPDHIETLRKF--------GMKVFYGDATRMDLLESAGAAKAEVLINA 471 (621)
T ss_pred cCcEEEEecChHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhc--------CCeEEEEeCCCHHHHHhcCCCcCCEEEEE
Confidence 356777777653 2 2233444578999999999999888662 4678999998753 2356666653
No 414
>PRK06194 hypothetical protein; Provisional
Probab=58.82 E-value=50 Score=30.61 Aligned_cols=74 Identities=9% Similarity=0.130 Sum_probs=47.6
Q ss_pred CCEEEEEcCccc---HHHHHHHHcCCeEEEEeCCHHHHHHHHHHhhcCCCCCCeEEEEccccCCC------------CCC
Q 018261 57 TDVILEIGPGTG---NLTKKLLEAGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTD------------LPY 121 (359)
Q Consensus 57 ~~~VLDIGcGtG---~lt~~La~~~~~V~avDid~~~i~~a~~~~~~~~~~~~v~~i~~D~~~~~------------l~~ 121 (359)
+.+||=.|.+.| .++..|++.|.+|+.++.++..+..+.+.+...+ .++.++.+|+.+.. ++.
T Consensus 6 ~k~vlVtGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~d~~~~~~~~~~~~~~~g~ 83 (287)
T PRK06194 6 GKVAVITGAASGFGLAFARIGAALGMKLVLADVQQDALDRAVAELRAQG--AEVLGVRTDVSDAAQVEALADAALERFGA 83 (287)
T ss_pred CCEEEEeCCccHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhcC--CeEEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence 467887775433 2444556668999999998776665555443322 26788999987632 124
Q ss_pred Ccccccccccc
Q 018261 122 FDICVANIPYQ 132 (359)
Q Consensus 122 fD~VvsNlPy~ 132 (359)
.|+||.|.-..
T Consensus 84 id~vi~~Ag~~ 94 (287)
T PRK06194 84 VHLLFNNAGVG 94 (287)
T ss_pred CCEEEECCCCC
Confidence 68888876543
No 415
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=58.58 E-value=37 Score=32.66 Aligned_cols=48 Identities=17% Similarity=0.088 Sum_probs=35.2
Q ss_pred HHcCCCCCCEEEEEcCc-ccHHHHHHHHc-CCeEEEEeCCHHHHHHHHHH
Q 018261 50 QKAGIKSTDVILEIGPG-TGNLTKKLLEA-GKMVIAVELDSRMVLELQRR 97 (359)
Q Consensus 50 ~~~~~~~~~~VLDIGcG-tG~lt~~La~~-~~~V~avDid~~~i~~a~~~ 97 (359)
..+.+.++++||=.|+| .|.++..+++. |.+|++++.++.-.+.+++.
T Consensus 159 ~~~~~~~g~~VlV~G~g~iG~~a~~~a~~~G~~vi~~~~~~~~~~~a~~~ 208 (329)
T TIGR02822 159 LRASLPPGGRLGLYGFGGSAHLTAQVALAQGATVHVMTRGAAARRLALAL 208 (329)
T ss_pred HhcCCCCCCEEEEEcCCHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHh
Confidence 44667889999999975 34455556654 77899999998887777663
No 416
>KOG1098 consensus Putative SAM-dependent rRNA methyltransferase SPB1 [RNA processing and modification; General function prediction only]
Probab=58.50 E-value=8.6 Score=40.58 Aligned_cols=35 Identities=17% Similarity=0.459 Sum_probs=29.4
Q ss_pred CCCCCEEEEEcCcccHHHHHHHHc---CCeEEEEeCCH
Q 018261 54 IKSTDVILEIGPGTGNLTKKLLEA---GKMVIAVELDS 88 (359)
Q Consensus 54 ~~~~~~VLDIGcGtG~lt~~La~~---~~~V~avDid~ 88 (359)
+.++..|||+||.+|.+.+..++. +.-|+|||+-|
T Consensus 42 l~~a~~vlDLcaAPG~W~QVA~q~~pv~slivGvDl~p 79 (780)
T KOG1098|consen 42 LEKAHVVLDLCAAPGGWLQVASQSMPVGSLIVGVDLVP 79 (780)
T ss_pred ccccchheeeccCCcHHHHHHHHhCCCCceEEEeeeee
Confidence 356778999999999999887775 57899999876
No 417
>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional
Probab=58.39 E-value=41 Score=30.81 Aligned_cols=71 Identities=23% Similarity=0.282 Sum_probs=45.8
Q ss_pred CCCEEEEEcCc----cc-HHHHHHHHcCCeEEEEeCCHHHHHHHHHHhhcCCCCCCeEEEEccccCCC------------
Q 018261 56 STDVILEIGPG----TG-NLTKKLLEAGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTD------------ 118 (359)
Q Consensus 56 ~~~~VLDIGcG----tG-~lt~~La~~~~~V~avDid~~~i~~a~~~~~~~~~~~~v~~i~~D~~~~~------------ 118 (359)
.++++|=.|.+ .| .++..|++.|.+|+.++.+.+..+.+.+.. . .++.++.+|+.+..
T Consensus 6 ~~k~~lItGas~~~gIG~a~a~~la~~G~~Vi~~~r~~~~~~~~~~~~-~----~~~~~~~~Dl~~~~~v~~~~~~~~~~ 80 (252)
T PRK06079 6 SGKKIVVMGVANKRSIAWGCAQAIKDQGATVIYTYQNDRMKKSLQKLV-D----EEDLLVECDVASDESIERAFATIKER 80 (252)
T ss_pred CCCEEEEeCCCCCCchHHHHHHHHHHCCCEEEEecCchHHHHHHHhhc-c----CceeEEeCCCCCHHHHHHHHHHHHHH
Confidence 45788888875 33 355666777999999987755433333321 1 25778889987532
Q ss_pred CCCCccccccccc
Q 018261 119 LPYFDICVANIPY 131 (359)
Q Consensus 119 l~~fD~VvsNlPy 131 (359)
+..+|++|.|.-+
T Consensus 81 ~g~iD~lv~nAg~ 93 (252)
T PRK06079 81 VGKIDGIVHAIAY 93 (252)
T ss_pred hCCCCEEEEcccc
Confidence 2357888888644
No 418
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=58.36 E-value=34 Score=34.37 Aligned_cols=63 Identities=21% Similarity=0.307 Sum_probs=42.2
Q ss_pred EEEEEcCcccHHHHHHHH----cCCeEEEEeCCHHHHHHHHHHhhcCCCCCCeEEEEccccCC------CCCCCcccccc
Q 018261 59 VILEIGPGTGNLTKKLLE----AGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKT------DLPYFDICVAN 128 (359)
Q Consensus 59 ~VLDIGcGtG~lt~~La~----~~~~V~avDid~~~i~~a~~~~~~~~~~~~v~~i~~D~~~~------~l~~fD~VvsN 128 (359)
+|+=+|+ |.++..+++ .+..|+.+|.+++.++.+++.. .+.++.+|+.+. ....+|.|++-
T Consensus 2 ~viIiG~--G~ig~~~a~~L~~~g~~v~vid~~~~~~~~~~~~~-------~~~~~~gd~~~~~~l~~~~~~~a~~vi~~ 72 (453)
T PRK09496 2 KIIIVGA--GQVGYTLAENLSGENNDVTVIDTDEERLRRLQDRL-------DVRTVVGNGSSPDVLREAGAEDADLLIAV 72 (453)
T ss_pred EEEEECC--CHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhhc-------CEEEEEeCCCCHHHHHHcCCCcCCEEEEe
Confidence 3555665 677776665 3789999999999877776532 477888888652 23356665554
Q ss_pred cc
Q 018261 129 IP 130 (359)
Q Consensus 129 lP 130 (359)
.+
T Consensus 73 ~~ 74 (453)
T PRK09496 73 TD 74 (453)
T ss_pred cC
Confidence 43
No 419
>TIGR02415 23BDH acetoin reductases. One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PubMed:11577733).
Probab=58.17 E-value=53 Score=29.68 Aligned_cols=71 Identities=23% Similarity=0.285 Sum_probs=44.9
Q ss_pred EEEEEcCcccHHHH----HHHHcCCeEEEEeCCHHHHHHHHHHhhcCCCCCCeEEEEccccCCC------------CCCC
Q 018261 59 VILEIGPGTGNLTK----KLLEAGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTD------------LPYF 122 (359)
Q Consensus 59 ~VLDIGcGtG~lt~----~La~~~~~V~avDid~~~i~~a~~~~~~~~~~~~v~~i~~D~~~~~------------l~~f 122 (359)
++|=.|+ +|.++. .|++.+.+|+.++.++.....+.+.+...+ .++.++.+|+.+.. ++..
T Consensus 2 ~~lItG~-sg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dl~~~~~i~~~~~~~~~~~~~i 78 (254)
T TIGR02415 2 VALVTGG-AQGIGKGIAERLAKDGFAVAVADLNEETAKETAKEINQAG--GKAVAYKLDVSDKDQVFSAIDQAAEKFGGF 78 (254)
T ss_pred EEEEeCC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CeEEEEEcCCCCHHHHHHHHHHHHHHcCCC
Confidence 4566675 344444 455668999999988766555544443332 26888899987532 1246
Q ss_pred cccccccccc
Q 018261 123 DICVANIPYQ 132 (359)
Q Consensus 123 D~VvsNlPy~ 132 (359)
|.+|.|....
T Consensus 79 d~vi~~ag~~ 88 (254)
T TIGR02415 79 DVMVNNAGVA 88 (254)
T ss_pred CEEEECCCcC
Confidence 8888876543
No 420
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=57.73 E-value=52 Score=29.96 Aligned_cols=73 Identities=22% Similarity=0.160 Sum_probs=49.2
Q ss_pred CCCEEEEEcCcccHHHHHH----HHcCCeEEEEeCCHHHHHHHHHHhhcCCCCCCeEEEEccccCCC------------C
Q 018261 56 STDVILEIGPGTGNLTKKL----LEAGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTD------------L 119 (359)
Q Consensus 56 ~~~~VLDIGcGtG~lt~~L----a~~~~~V~avDid~~~i~~a~~~~~~~~~~~~v~~i~~D~~~~~------------l 119 (359)
.+.++|=.|+ +|.++..+ ++.+.+|+.++.++.-++.+.+.+...+ .++.++.+|+.+.. .
T Consensus 11 ~~k~ilItGa-~g~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~~--~~~~~~~~Dl~d~~~i~~~~~~~~~~~ 87 (259)
T PRK08213 11 SGKTALVTGG-SRGLGLQIAEALGEAGARVVLSARKAEELEEAAAHLEALG--IDALWIAADVADEADIERLAEETLERF 87 (259)
T ss_pred CCCEEEEECC-CchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcC--CeEEEEEccCCCHHHHHHHHHHHHHHh
Confidence 4578888884 55555554 4458899999998877666665554332 26788999987632 1
Q ss_pred CCCccccccccc
Q 018261 120 PYFDICVANIPY 131 (359)
Q Consensus 120 ~~fD~VvsNlPy 131 (359)
+..|.||.|...
T Consensus 88 ~~id~vi~~ag~ 99 (259)
T PRK08213 88 GHVDILVNNAGA 99 (259)
T ss_pred CCCCEEEECCCC
Confidence 346888877654
No 421
>TIGR01081 mpl UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase. Alternate name: murein tripeptide ligase
Probab=57.63 E-value=19 Score=36.42 Aligned_cols=74 Identities=16% Similarity=0.143 Sum_probs=44.7
Q ss_pred cCcccHHHHHHHHcCCeEEEEeCCHHHHHHHHHHhhcCCCCCCeEEEEccccCCCCCCCcccccccccccchHHHHHHHh
Q 018261 64 GPGTGNLTKKLLEAGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTDLPYFDICVANIPYQISSPLTFKLLF 143 (359)
Q Consensus 64 GcGtG~lt~~La~~~~~V~avDid~~~i~~a~~~~~~~~~~~~v~~i~~D~~~~~l~~fD~VvsNlPy~i~s~ii~~ll~ 143 (359)
|+|...++..|.+.|..|++.|..+.. +. ...+... .+++..+.-.......+|+||.++-.....|.+....+
T Consensus 9 G~gm~~la~~l~~~G~~V~~~D~~~~~-~~-~~~l~~~----gi~~~~~~~~~~~~~~~d~vV~SpgI~~~~~~~~~a~~ 82 (448)
T TIGR01081 9 GTFMGGLAMIAKQLGHEVTGSDANVYP-PM-STQLEAQ----GIEIIEGFDAAQLEPKPDLVVIGNAMKRGNPCVEAVLN 82 (448)
T ss_pred HHhHHHHHHHHHhCCCEEEEECCCCCc-HH-HHHHHHC----CCEEeCCCCHHHCCCCCCEEEECCCCCCCCHHHHHHHH
Confidence 566667888888899999999987532 11 1123222 35555443222112347888888766666776655544
No 422
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=57.28 E-value=37 Score=33.19 Aligned_cols=47 Identities=15% Similarity=0.208 Sum_probs=35.3
Q ss_pred HHcCCCCCCEEEEEcCcc-cHHHHHHHHc-CC-eEEEEeCCHHHHHHHHH
Q 018261 50 QKAGIKSTDVILEIGPGT-GNLTKKLLEA-GK-MVIAVELDSRMVLELQR 96 (359)
Q Consensus 50 ~~~~~~~~~~VLDIGcGt-G~lt~~La~~-~~-~V~avDid~~~i~~a~~ 96 (359)
....+.++++||=+|+|. |.++..+++. +. +|+++|.+++-.+.+++
T Consensus 179 ~~~~~~~g~~VlV~G~G~iG~~a~q~Ak~~G~~~Vi~~~~~~~~~~~a~~ 228 (368)
T TIGR02818 179 NTAKVEEGDTVAVFGLGGIGLSVIQGARMAKASRIIAIDINPAKFELAKK 228 (368)
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH
Confidence 445677899999998753 4555666665 66 79999999998888755
No 423
>PRK08690 enoyl-(acyl carrier protein) reductase; Provisional
Probab=57.11 E-value=41 Score=31.02 Aligned_cols=73 Identities=18% Similarity=0.141 Sum_probs=44.3
Q ss_pred CCCEEEEEcC-cccH----HHHHHHHcCCeEEEEeCCHHHHHHHHHHhhcCCCCCCeEEEEccccCCC------------
Q 018261 56 STDVILEIGP-GTGN----LTKKLLEAGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTD------------ 118 (359)
Q Consensus 56 ~~~~VLDIGc-GtG~----lt~~La~~~~~V~avDid~~~i~~a~~~~~~~~~~~~v~~i~~D~~~~~------------ 118 (359)
.+.++|=.|+ |++. ++..|++.|++|+.+..+.+..+.+++.....+ ....+.+|+.+.+
T Consensus 5 ~~k~~lITGa~~~~GIG~a~a~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~---~~~~~~~Dv~~~~~v~~~~~~~~~~ 81 (261)
T PRK08690 5 QGKKILITGMISERSIAYGIAKACREQGAELAFTYVVDKLEERVRKMAAELD---SELVFRCDVASDDEINQVFADLGKH 81 (261)
T ss_pred CCcEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEcCcHHHHHHHHHHHhccC---CceEEECCCCCHHHHHHHHHHHHHH
Confidence 4567888886 3333 444555668999887665544444444433322 3456788887642
Q ss_pred CCCCccccccccc
Q 018261 119 LPYFDICVANIPY 131 (359)
Q Consensus 119 l~~fD~VvsNlPy 131 (359)
+...|++|.|.-.
T Consensus 82 ~g~iD~lVnnAG~ 94 (261)
T PRK08690 82 WDGLDGLVHSIGF 94 (261)
T ss_pred hCCCcEEEECCcc
Confidence 2357888888644
No 424
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=57.05 E-value=54 Score=29.39 Aligned_cols=72 Identities=14% Similarity=0.145 Sum_probs=47.0
Q ss_pred CCEEEEEcCcccHHHHHH----HHcCCeEEEEeCCHHHHHHHHHHhhcCCCCCCeEEEEccccCCC------------CC
Q 018261 57 TDVILEIGPGTGNLTKKL----LEAGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTD------------LP 120 (359)
Q Consensus 57 ~~~VLDIGcGtG~lt~~L----a~~~~~V~avDid~~~i~~a~~~~~~~~~~~~v~~i~~D~~~~~------------l~ 120 (359)
+.++|=.|+ +|.++..+ ++.|.+|+.++.++.-.......+...+ .++.++.+|+.+.. ++
T Consensus 7 ~~~vlVtG~-sg~iG~~l~~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 83 (239)
T PRK07666 7 GKNALITGA-GRGIGRAVAIALAKEGVNVGLLARTEENLKAVAEEVEAYG--VKVVIATADVSDYEEVTAAIEQLKNELG 83 (239)
T ss_pred CCEEEEEcC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhC--CeEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 467888885 56666554 4458899999998776555444443322 36888899986532 12
Q ss_pred CCccccccccc
Q 018261 121 YFDICVANIPY 131 (359)
Q Consensus 121 ~fD~VvsNlPy 131 (359)
..|.||.|...
T Consensus 84 ~id~vi~~ag~ 94 (239)
T PRK07666 84 SIDILINNAGI 94 (239)
T ss_pred CccEEEEcCcc
Confidence 46888877543
No 425
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=56.74 E-value=62 Score=29.05 Aligned_cols=72 Identities=17% Similarity=0.276 Sum_probs=47.7
Q ss_pred CCEEEEEcCccc---HHHHHHHHcCCeEEEEeCCHHHHHHHHHHhhcCCCCCCeEEEEccccCCC------------CCC
Q 018261 57 TDVILEIGPGTG---NLTKKLLEAGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTD------------LPY 121 (359)
Q Consensus 57 ~~~VLDIGcGtG---~lt~~La~~~~~V~avDid~~~i~~a~~~~~~~~~~~~v~~i~~D~~~~~------------l~~ 121 (359)
+.+||=+|+..| .++..|++.+.+|++++.++.-...+...+.. + .++.++.+|+.+.. .+.
T Consensus 5 ~~~vlItGasg~iG~~l~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~-~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 81 (251)
T PRK07231 5 GKVAIVTGASSGIGEGIARRFAAEGARVVVTDRNEEAAERVAAEILA-G--GRAIAVAADVSDEADVEAAVAAALERFGS 81 (251)
T ss_pred CcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhc-C--CeEEEEECCCCCHHHHHHHHHHHHHHhCC
Confidence 457787876433 24555666688999999998766655554433 1 26888999987632 124
Q ss_pred Cccccccccc
Q 018261 122 FDICVANIPY 131 (359)
Q Consensus 122 fD~VvsNlPy 131 (359)
+|+||.|..+
T Consensus 82 ~d~vi~~ag~ 91 (251)
T PRK07231 82 VDILVNNAGT 91 (251)
T ss_pred CCEEEECCCC
Confidence 6888877654
No 426
>PRK06949 short chain dehydrogenase; Provisional
Probab=56.53 E-value=60 Score=29.40 Aligned_cols=72 Identities=24% Similarity=0.261 Sum_probs=47.9
Q ss_pred CCCEEEEEcCcccHHHHH----HHHcCCeEEEEeCCHHHHHHHHHHhhcCCCCCCeEEEEccccCCC------------C
Q 018261 56 STDVILEIGPGTGNLTKK----LLEAGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTD------------L 119 (359)
Q Consensus 56 ~~~~VLDIGcGtG~lt~~----La~~~~~V~avDid~~~i~~a~~~~~~~~~~~~v~~i~~D~~~~~------------l 119 (359)
.+.+||=.|. +|.++.. |++.+.+|++++.+++.++.+...+.... .++.++.+|+.+.. .
T Consensus 8 ~~k~ilItGa-sg~IG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~ 84 (258)
T PRK06949 8 EGKVALVTGA-SSGLGARFAQVLAQAGAKVVLASRRVERLKELRAEIEAEG--GAAHVVSLDVTDYQSIKAAVAHAETEA 84 (258)
T ss_pred CCCEEEEECC-CcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEecCCCHHHHHHHHHHHHHhc
Confidence 4678888884 4444444 44457899999999887776666554322 26788889987532 1
Q ss_pred CCCcccccccc
Q 018261 120 PYFDICVANIP 130 (359)
Q Consensus 120 ~~fD~VvsNlP 130 (359)
...|.+|.|..
T Consensus 85 ~~~d~li~~ag 95 (258)
T PRK06949 85 GTIDILVNNSG 95 (258)
T ss_pred CCCCEEEECCC
Confidence 24687777654
No 427
>PLN02662 cinnamyl-alcohol dehydrogenase family protein
Probab=56.52 E-value=44 Score=31.51 Aligned_cols=73 Identities=15% Similarity=0.176 Sum_probs=42.8
Q ss_pred CCEEEEEcCcccHHHHHHHH----cCCeEEEEeCCHHHHHHHHHHhhcCCCCCCeEEEEccccCCC-----CCCCccccc
Q 018261 57 TDVILEIGPGTGNLTKKLLE----AGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTD-----LPYFDICVA 127 (359)
Q Consensus 57 ~~~VLDIGcGtG~lt~~La~----~~~~V~avDid~~~i~~a~~~~~~~~~~~~v~~i~~D~~~~~-----l~~fD~Vvs 127 (359)
+.+||=.|+ +|.++..|++ .|.+|+++..++.................+++++.+|+.+.. +..+|.||.
T Consensus 4 ~~~ilVtGa-tGfIG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~Vih 82 (322)
T PLN02662 4 GKVVCVTGA-SGYIASWLVKLLLQRGYTVKATVRDPNDPKKTEHLLALDGAKERLHLFKANLLEEGSFDSVVDGCEGVFH 82 (322)
T ss_pred CCEEEEECC-hHHHHHHHHHHHHHCCCEEEEEEcCCCchhhHHHHHhccCCCCceEEEeccccCcchHHHHHcCCCEEEE
Confidence 467777775 6776666554 478999988775432222221111111137889999998643 224677766
Q ss_pred ccc
Q 018261 128 NIP 130 (359)
Q Consensus 128 NlP 130 (359)
+..
T Consensus 83 ~A~ 85 (322)
T PLN02662 83 TAS 85 (322)
T ss_pred eCC
Confidence 543
No 428
>COG4301 Uncharacterized conserved protein [Function unknown]
Probab=56.45 E-value=38 Score=32.10 Aligned_cols=64 Identities=20% Similarity=0.377 Sum_probs=44.7
Q ss_pred cCCCCCCEEEEEcCcccHHHHHHHHc----C--CeEEEEeCCHHHHHHHH-HHhhcCCCCCCeEEEEccccC
Q 018261 52 AGIKSTDVILEIGPGTGNLTKKLLEA----G--KMVIAVELDSRMVLELQ-RRFQSTPYSNRLKVIQGDVLK 116 (359)
Q Consensus 52 ~~~~~~~~VLDIGcGtG~lt~~La~~----~--~~V~avDid~~~i~~a~-~~~~~~~~~~~v~~i~~D~~~ 116 (359)
+.+..+++.+|+|.|+-.-|+.|... + .+.+.||+|...+.... ..+..++ .-.+.-+++|...
T Consensus 74 a~~~g~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y~-~l~v~~l~~~~~~ 144 (321)
T COG4301 74 ASITGACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREYP-GLEVNALCGDYEL 144 (321)
T ss_pred HHhhCcceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhCC-CCeEeehhhhHHH
Confidence 34456789999999999988888764 2 67999999999886543 3444444 1135556777653
No 429
>KOG2782 consensus Putative SAM dependent methyltransferases [General function prediction only]
Probab=56.25 E-value=12 Score=34.70 Aligned_cols=56 Identities=13% Similarity=0.174 Sum_probs=48.0
Q ss_pred HHHHHHHHHHcCCCCCCEEEEEcCcccHHHHHHHHcC--CeEEEEeCCHHHHHHHHHH
Q 018261 42 PLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEAG--KMVIAVELDSRMVLELQRR 97 (359)
Q Consensus 42 ~~v~~~iv~~~~~~~~~~VLDIGcGtG~lt~~La~~~--~~V~avDid~~~i~~a~~~ 97 (359)
|-++...++.+.+.++...+|.--|.|..|..+++.. .+++++|.||-+.+.|+-.
T Consensus 29 PVm~devl~~lspv~g~sf~DmTfGagGHt~~ilqk~se~k~yalDrDP~A~~La~~~ 86 (303)
T KOG2782|consen 29 PVMLDEVLDILSPVRGRSFVDMTFGAGGHTSSILQKHSELKNYALDRDPVARKLAHFH 86 (303)
T ss_pred ceehhhHHHHcCCCCCceEEEEeccCCcchHHHHHhCcHhhhhhhccChHHHHHHHHh
Confidence 5567888999999999999999999999999999874 6899999999887766543
No 430
>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional
Probab=55.94 E-value=53 Score=30.05 Aligned_cols=71 Identities=28% Similarity=0.437 Sum_probs=47.9
Q ss_pred CCCEEEEEcCcccH---HHHHHHHcCCeEEEEeCCHHHHHHHHHHhhcCCCCCCeEEEEccccCCC------------CC
Q 018261 56 STDVILEIGPGTGN---LTKKLLEAGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTD------------LP 120 (359)
Q Consensus 56 ~~~~VLDIGcGtG~---lt~~La~~~~~V~avDid~~~i~~a~~~~~~~~~~~~v~~i~~D~~~~~------------l~ 120 (359)
.+.++|=.|++.|. ++..|++.|.+|+.++.++..++.+.+... .++.++.+|+.+.. ++
T Consensus 5 ~~k~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~-----~~~~~~~~D~~~~~~~~~~~~~~~~~~g 79 (263)
T PRK06200 5 HGQVALITGGGSGIGRALVERFLAEGARVAVLERSAEKLASLRQRFG-----DHVLVVEGDVTSYADNQRAVDQTVDAFG 79 (263)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhC-----CcceEEEccCCCHHHHHHHHHHHHHhcC
Confidence 45688888875542 445566668999999999877666554431 25778888887532 13
Q ss_pred CCccccccccc
Q 018261 121 YFDICVANIPY 131 (359)
Q Consensus 121 ~fD~VvsNlPy 131 (359)
..|++|.|..+
T Consensus 80 ~id~li~~ag~ 90 (263)
T PRK06200 80 KLDCFVGNAGI 90 (263)
T ss_pred CCCEEEECCCC
Confidence 46888887654
No 431
>PRK06484 short chain dehydrogenase; Validated
Probab=55.76 E-value=2.1e+02 Score=29.21 Aligned_cols=71 Identities=18% Similarity=0.251 Sum_probs=48.8
Q ss_pred CCCEEEEEcCccc---HHHHHHHHcCCeEEEEeCCHHHHHHHHHHhhcCCCCCCeEEEEccccCCC------------CC
Q 018261 56 STDVILEIGPGTG---NLTKKLLEAGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTD------------LP 120 (359)
Q Consensus 56 ~~~~VLDIGcGtG---~lt~~La~~~~~V~avDid~~~i~~a~~~~~~~~~~~~v~~i~~D~~~~~------------l~ 120 (359)
.+.++|=.|++.| .++..|++.|.+|+.++.++.-+..+.+.+. .++.++..|+.+.. +.
T Consensus 4 ~~k~~lITGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~-----~~~~~~~~D~~~~~~~~~~~~~~~~~~g 78 (520)
T PRK06484 4 QSRVVLVTGAAGGIGRAACQRFARAGDQVVVADRNVERARERADSLG-----PDHHALAMDVSDEAQIREGFEQLHREFG 78 (520)
T ss_pred CCeEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhC-----CceeEEEeccCCHHHHHHHHHHHHHHhC
Confidence 4567888888776 4556666778999999998876665554432 25677888886532 13
Q ss_pred CCccccccccc
Q 018261 121 YFDICVANIPY 131 (359)
Q Consensus 121 ~fD~VvsNlPy 131 (359)
..|++|.|.-+
T Consensus 79 ~iD~li~nag~ 89 (520)
T PRK06484 79 RIDVLVNNAGV 89 (520)
T ss_pred CCCEEEECCCc
Confidence 57888888543
No 432
>PLN02780 ketoreductase/ oxidoreductase
Probab=55.54 E-value=46 Score=32.03 Aligned_cols=61 Identities=18% Similarity=0.222 Sum_probs=42.5
Q ss_pred CCCEEEEEcCccc---HHHHHHHHcCCeEEEEeCCHHHHHHHHHHhhcCCCCCCeEEEEccccC
Q 018261 56 STDVILEIGPGTG---NLTKKLLEAGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLK 116 (359)
Q Consensus 56 ~~~~VLDIGcGtG---~lt~~La~~~~~V~avDid~~~i~~a~~~~~~~~~~~~v~~i~~D~~~ 116 (359)
.+..+|=.|++.| .++..|++.|.+|+.++.+++-++.+.+.+....-..++..+..|+.+
T Consensus 52 ~g~~~lITGAs~GIG~alA~~La~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~~~Dl~~ 115 (320)
T PLN02780 52 YGSWALVTGPTDGIGKGFAFQLARKGLNLVLVARNPDKLKDVSDSIQSKYSKTQIKTVVVDFSG 115 (320)
T ss_pred cCCEEEEeCCCcHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCCCcEEEEEEEECCC
Confidence 3678999998666 366677777999999999998877766655432101256677777763
No 433
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=55.37 E-value=63 Score=29.23 Aligned_cols=74 Identities=19% Similarity=0.248 Sum_probs=47.8
Q ss_pred CCCEEEEEcCccc---HHHHHHHHcCCeEEEEeCCHHHHHHHHHHhhcCCCCCCeEEEEccccCCC------------CC
Q 018261 56 STDVILEIGPGTG---NLTKKLLEAGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTD------------LP 120 (359)
Q Consensus 56 ~~~~VLDIGcGtG---~lt~~La~~~~~V~avDid~~~i~~a~~~~~~~~~~~~v~~i~~D~~~~~------------l~ 120 (359)
.+.++|=.|+..| .++..|++.+.+|+.++.++.....+.+.+...+ .++.++.+|+.+.. .+
T Consensus 6 ~~~~vlItGasg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 83 (262)
T PRK13394 6 NGKTAVVTGAASGIGKEIALELARAGAAVAIADLNQDGANAVADEINKAG--GKAIGVAMDVTNEDAVNAGIDKVAERFG 83 (262)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhcC--ceEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 3567886666332 2444556668999999999876666655554333 26778899987632 12
Q ss_pred CCccccccccc
Q 018261 121 YFDICVANIPY 131 (359)
Q Consensus 121 ~fD~VvsNlPy 131 (359)
..|.||.|.-+
T Consensus 84 ~~d~vi~~ag~ 94 (262)
T PRK13394 84 SVDILVSNAGI 94 (262)
T ss_pred CCCEEEECCcc
Confidence 46877776543
No 434
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=55.21 E-value=55 Score=31.74 Aligned_cols=76 Identities=16% Similarity=0.368 Sum_probs=57.2
Q ss_pred CCCCCEEEEEcCcccHHHHHHHHc--CCeEEEEeCCHHHHHHHHHHhhcC--CC-CCCeEEEEccccCC----CCCCCcc
Q 018261 54 IKSTDVILEIGPGTGNLTKKLLEA--GKMVIAVELDSRMVLELQRRFQST--PY-SNRLKVIQGDVLKT----DLPYFDI 124 (359)
Q Consensus 54 ~~~~~~VLDIGcGtG~lt~~La~~--~~~V~avDid~~~i~~a~~~~~~~--~~-~~~v~~i~~D~~~~----~l~~fD~ 124 (359)
+...++||=||-|-|...+..+++ ...++-+|+|...++..++-+... ++ ..++.++-||...+ ....||+
T Consensus 119 ~~npkkvlVVgggDggvlrevikH~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~~~~~dV 198 (337)
T KOG1562|consen 119 HPNPKKVLVVGGGDGGVLREVIKHKSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLKENPFDV 198 (337)
T ss_pred CCCCCeEEEEecCCccceeeeeccccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhccCCceE
Confidence 456789999999999998887776 367999999999998887765432 11 34899999997543 2447998
Q ss_pred ccccc
Q 018261 125 CVANI 129 (359)
Q Consensus 125 VvsNl 129 (359)
|+...
T Consensus 199 ii~ds 203 (337)
T KOG1562|consen 199 IITDS 203 (337)
T ss_pred EEEec
Confidence 87643
No 435
>PRK12748 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=55.13 E-value=1.6e+02 Score=26.60 Aligned_cols=72 Identities=21% Similarity=0.260 Sum_probs=43.4
Q ss_pred CCEEEEEcCc----cc-HHHHHHHHcCCeEEEEeCC------------HHHHHHHHHHhhcCCCCCCeEEEEccccCCC-
Q 018261 57 TDVILEIGPG----TG-NLTKKLLEAGKMVIAVELD------------SRMVLELQRRFQSTPYSNRLKVIQGDVLKTD- 118 (359)
Q Consensus 57 ~~~VLDIGcG----tG-~lt~~La~~~~~V~avDid------------~~~i~~a~~~~~~~~~~~~v~~i~~D~~~~~- 118 (359)
+.+||=.|++ .| .++..|++.|++|+.++.+ +.... +.+.+...+ .++.++..|+.+..
T Consensus 5 ~k~vlItGas~~~giG~~la~~l~~~G~~vi~~~r~~~~~~~~~~~~~~~~~~-~~~~~~~~~--~~~~~~~~D~~~~~~ 81 (256)
T PRK12748 5 KKIALVTGASRLNGIGAAVCRRLAAKGIDIFFTYWSPYDKTMPWGMHDKEPVL-LKEEIESYG--VRCEHMEIDLSQPYA 81 (256)
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHHHcCCcEEEEcCCccccccccccchhhHHH-HHHHHHhcC--CeEEEEECCCCCHHH
Confidence 4678888875 33 2455666678899999765 22222 323332222 36888999987632
Q ss_pred -----------CCCCccccccccc
Q 018261 119 -----------LPYFDICVANIPY 131 (359)
Q Consensus 119 -----------l~~fD~VvsNlPy 131 (359)
+...|.||.|.-+
T Consensus 82 ~~~~~~~~~~~~g~id~vi~~ag~ 105 (256)
T PRK12748 82 PNRVFYAVSERLGDPSILINNAAY 105 (256)
T ss_pred HHHHHHHHHHhCCCCCEEEECCCc
Confidence 1346888777643
No 436
>KOG3350 consensus Uncharacterized conserved protein [Function unknown]
Probab=54.95 E-value=1.6e+02 Score=26.49 Aligned_cols=136 Identities=23% Similarity=0.172 Sum_probs=71.9
Q ss_pred CCcccccCHHHHHHHHHHc--CCCCCCEEEEEcCcccHHHHHHHHc---CCeEEEEeCCHHHHHHHHHHhhcCCCCCCeE
Q 018261 34 KGQHILKNPLLVESIVQKA--GIKSTDVILEIGPGTGNLTKKLLEA---GKMVIAVELDSRMVLELQRRFQSTPYSNRLK 108 (359)
Q Consensus 34 ~GQ~fl~d~~v~~~iv~~~--~~~~~~~VLDIGcGtG~lt~~La~~---~~~V~avDid~~~i~~a~~~~~~~~~~~~v~ 108 (359)
++|.+. ++..++.++... ....+.+|--|.|=+=++-....+. .-+|+-+|.|.++-... -+
T Consensus 50 lsqfwy-~~eta~~La~e~v~~s~e~~rIacvS~Psly~y~k~re~~~~~~~v~lfEfDkRFe~yg------------~e 116 (217)
T KOG3350|consen 50 LSQFWY-SDETARKLAAERVEASGEGSRIACVSCPSLYVYQKKREIEIPHDQVYLFEFDKRFELYG------------TE 116 (217)
T ss_pred hhhhhc-CHHHHHHHHHHHHhhcccCceEEEEeCchHHhhhhhhhccCCceeEEEEEehhhHHhcc------------ce
Confidence 556554 445555544432 2245667877777764433333322 36899999998763222 34
Q ss_pred EEEccccCC-CCC-----CCcccccccccccchHHHHHHHhcCchhhHHHHHHHHHHHHHHhccCCCeeEEeecchhhhH
Q 018261 109 VIQGDVLKT-DLP-----YFDICVANIPYQISSPLTFKLLFHQPAFRCAIIMFQKEFAMRLVAQPGDKLYCRLSVNTQLH 182 (359)
Q Consensus 109 ~i~~D~~~~-~l~-----~fD~VvsNlPy~i~s~ii~~ll~~~~~~~~~~~~~qkE~a~Rlv~kpGg~~y~~lsv~~q~~ 182 (359)
|++-|.-.. ++| .||+||+.+||--.. -+.+. .+.+++ +.++.-++....+.. +.
T Consensus 117 FvfYDyN~p~dlp~~lk~~fdiivaDPPfL~~e-Cl~Kt---------------s~tik~-L~r~~~kvilCtGei--me 177 (217)
T KOG3350|consen 117 FVFYDYNCPLDLPDELKAHFDIIVADPPFLSEE-CLAKT---------------SETIKR-LQRNQKKVILCTGEI--ME 177 (217)
T ss_pred eEEeccCCCCCCHHHHHhcccEEEeCCccccch-hhhhh---------------HHHHHH-HhcCCceEEEechhH--hH
Confidence 666666442 233 599999999984321 11111 233433 555555554332221 12
Q ss_pred HhhhhhhccCCCCccCCCC
Q 018261 183 ARVSHLLKVGKNNFRPPPK 201 (359)
Q Consensus 183 ~~v~~l~~v~~~~F~P~P~ 201 (359)
..+..++.+....|.|.+.
T Consensus 178 e~~s~~l~~~~~sF~PeH~ 196 (217)
T KOG3350|consen 178 EWASALLPVLKCSFRPEHE 196 (217)
T ss_pred HHHHHHhhhhhccccchhh
Confidence 2233344466777887654
No 437
>PRK07102 short chain dehydrogenase; Provisional
Probab=54.57 E-value=59 Score=29.25 Aligned_cols=71 Identities=18% Similarity=0.244 Sum_probs=44.7
Q ss_pred CEEEEEcCcccHHHH----HHHHcCCeEEEEeCCHHHHHHHHHHhhcCCCCCCeEEEEccccCCCC---------CCCcc
Q 018261 58 DVILEIGPGTGNLTK----KLLEAGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTDL---------PYFDI 124 (359)
Q Consensus 58 ~~VLDIGcGtG~lt~----~La~~~~~V~avDid~~~i~~a~~~~~~~~~~~~v~~i~~D~~~~~l---------~~fD~ 124 (359)
.+||=.|+. |.++. .|++.|.+|++++.++.-.+...+.+...+ ..++.++.+|+.+... ..+|.
T Consensus 2 ~~vlItGas-~giG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~Dl~~~~~~~~~~~~~~~~~d~ 79 (243)
T PRK07102 2 KKILIIGAT-SDIARACARRYAAAGARLYLAARDVERLERLADDLRARG-AVAVSTHELDILDTASHAAFLDSLPALPDI 79 (243)
T ss_pred cEEEEEcCC-cHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhc-CCeEEEEecCCCChHHHHHHHHHHhhcCCE
Confidence 367777854 44444 455568899999999876555444433221 1378899999886431 13688
Q ss_pred cccccc
Q 018261 125 CVANIP 130 (359)
Q Consensus 125 VvsNlP 130 (359)
++.|..
T Consensus 80 vv~~ag 85 (243)
T PRK07102 80 VLIAVG 85 (243)
T ss_pred EEECCc
Confidence 877653
No 438
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=54.56 E-value=66 Score=32.92 Aligned_cols=85 Identities=18% Similarity=0.193 Sum_probs=50.6
Q ss_pred cCCCCCCEEEEEcCcccH--HHHHHHHcCCeEEEEeCCHHHHHHHHHHhhcCCCCCCeEEEEccccCCCCCCCccccccc
Q 018261 52 AGIKSTDVILEIGPGTGN--LTKKLLEAGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTDLPYFDICVANI 129 (359)
Q Consensus 52 ~~~~~~~~VLDIGcGtG~--lt~~La~~~~~V~avDid~~~i~~a~~~~~~~~~~~~v~~i~~D~~~~~l~~fD~VvsNl 129 (359)
+..-.+.+|+=+|+|--. +...|.+.|..|++.|.++.... +..... .+.+..+.-....+..+|+||.++
T Consensus 10 ~~~~~~~~v~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~~~~~---~~l~~~----gi~~~~~~~~~~~~~~~d~vV~Sp 82 (473)
T PRK00141 10 LPQELSGRVLVAGAGVSGRGIAAMLSELGCDVVVADDNETARH---KLIEVT----GVADISTAEASDQLDSFSLVVTSP 82 (473)
T ss_pred cccccCCeEEEEccCHHHHHHHHHHHHCCCEEEEECCChHHHH---HHHHhc----CcEEEeCCCchhHhcCCCEEEeCC
Confidence 333456789999988654 44556667899999997654321 112222 355655532111234688888887
Q ss_pred ccccchHHHHHHHh
Q 018261 130 PYQISSPLTFKLLF 143 (359)
Q Consensus 130 Py~i~s~ii~~ll~ 143 (359)
......|.+....+
T Consensus 83 gi~~~~p~~~~a~~ 96 (473)
T PRK00141 83 GWRPDSPLLVDAQS 96 (473)
T ss_pred CCCCCCHHHHHHHH
Confidence 66666666655543
No 439
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=54.45 E-value=47 Score=33.78 Aligned_cols=83 Identities=24% Similarity=0.322 Sum_probs=50.4
Q ss_pred CCEEEEEcCcccHHH--HHHHHcCCeEEEEeCCHHHHH-HHHHHhhcCCCCCCeEEEEccccCCCCCCCccccccccccc
Q 018261 57 TDVILEIGPGTGNLT--KKLLEAGKMVIAVELDSRMVL-ELQRRFQSTPYSNRLKVIQGDVLKTDLPYFDICVANIPYQI 133 (359)
Q Consensus 57 ~~~VLDIGcGtG~lt--~~La~~~~~V~avDid~~~i~-~a~~~~~~~~~~~~v~~i~~D~~~~~l~~fD~VvsNlPy~i 133 (359)
+.+|+=+|-|....+ ..|.+.|..|++.|.++.... ...+.+... .+.+..++.....+..+|+||.++-...
T Consensus 14 ~~~i~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~~~~~~~~~~~l~~~----gi~~~~~~~~~~~~~~~dlVV~Spgi~~ 89 (458)
T PRK01710 14 NKKVAVVGIGVSNIPLIKFLVKLGAKVTAFDKKSEEELGEVSNELKEL----GVKLVLGENYLDKLDGFDVIFKTPSMRI 89 (458)
T ss_pred CCeEEEEcccHHHHHHHHHHHHCCCEEEEECCCCCccchHHHHHHHhC----CCEEEeCCCChHHhccCCEEEECCCCCC
Confidence 467888898887444 477777999999998763221 111123222 3556555432212346888888776666
Q ss_pred chHHHHHHHh
Q 018261 134 SSPLTFKLLF 143 (359)
Q Consensus 134 ~s~ii~~ll~ 143 (359)
+.|++....+
T Consensus 90 ~~p~~~~a~~ 99 (458)
T PRK01710 90 DSPELVKAKE 99 (458)
T ss_pred CchHHHHHHH
Confidence 6676655544
No 440
>COG5379 BtaA S-adenosylmethionine:diacylglycerol 3-amino-3-carboxypropyl transferase [Lipid metabolism]
Probab=54.33 E-value=34 Score=33.14 Aligned_cols=49 Identities=18% Similarity=0.201 Sum_probs=37.7
Q ss_pred HcCCCCCCEEEEEcCcccHHHHHHHHcCCeEEEEeCCHHHHHHHHHHhh
Q 018261 51 KAGIKSTDVILEIGPGTGNLTKKLLEAGKMVIAVELDSRMVLELQRRFQ 99 (359)
Q Consensus 51 ~~~~~~~~~VLDIGcGtG~lt~~La~~~~~V~avDid~~~i~~a~~~~~ 99 (359)
++.+..+.+|.-||+|--++...|++.-.+|.+||+++.-++.-+-++.
T Consensus 58 am~~g~ghrivtigSGGcn~L~ylsr~Pa~id~VDlN~ahiAln~lkla 106 (414)
T COG5379 58 AMQLGIGHRIVTIGSGGCNMLAYLSRAPARIDVVDLNPAHIALNRLKLA 106 (414)
T ss_pred HHhcCCCcEEEEecCCcchHHHHhhcCCceeEEEeCCHHHHHHHHHHHH
Confidence 3445677899999999665666666667999999999998877665554
No 441
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=54.21 E-value=48 Score=33.93 Aligned_cols=84 Identities=20% Similarity=0.175 Sum_probs=56.9
Q ss_pred CCEEEEEcCcccHH--HHHHHHcCCeEEEEeCCHHHHHHHHHHhhcCCCCCCeEEEEccccCCCCCCCcccccccccccc
Q 018261 57 TDVILEIGPGTGNL--TKKLLEAGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTDLPYFDICVANIPYQIS 134 (359)
Q Consensus 57 ~~~VLDIGcGtG~l--t~~La~~~~~V~avDid~~~i~~a~~~~~~~~~~~~v~~i~~D~~~~~l~~fD~VvsNlPy~i~ 134 (359)
+.+|+=+|=|--.+ ...|.+.|..|++.|.++............ .++.+..+.-....+..+|+||-|+=..++
T Consensus 7 ~~kv~V~GLG~sG~a~a~~L~~~G~~v~v~D~~~~~~~~~~~~~~~----~~i~~~~g~~~~~~~~~~d~vV~SPGi~~~ 82 (448)
T COG0771 7 GKKVLVLGLGKSGLAAARFLLKLGAEVTVSDDRPAPEGLAAQPLLL----EGIEVELGSHDDEDLAEFDLVVKSPGIPPT 82 (448)
T ss_pred CCEEEEEecccccHHHHHHHHHCCCeEEEEcCCCCccchhhhhhhc----cCceeecCccchhccccCCEEEECCCCCCC
Confidence 67888888875543 345666799999999888772222221111 267777776555455678999999888888
Q ss_pred hHHHHHHHhc
Q 018261 135 SPLTFKLLFH 144 (359)
Q Consensus 135 s~ii~~ll~~ 144 (359)
.|++......
T Consensus 83 ~p~v~~A~~~ 92 (448)
T COG0771 83 HPLVEAAKAA 92 (448)
T ss_pred CHHHHHHHHc
Confidence 8877666543
No 442
>KOG1205 consensus Predicted dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=54.03 E-value=50 Score=31.65 Aligned_cols=77 Identities=21% Similarity=0.295 Sum_probs=54.1
Q ss_pred CCCEEEEEcCccc---HHHHHHHHcCCeEEEEeCCHHHHHHHHHHhhcCCCCCCeEEEEccccCCC------------CC
Q 018261 56 STDVILEIGPGTG---NLTKKLLEAGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTD------------LP 120 (359)
Q Consensus 56 ~~~~VLDIGcGtG---~lt~~La~~~~~V~avDid~~~i~~a~~~~~~~~~~~~v~~i~~D~~~~~------------l~ 120 (359)
.++.||==||-+| .++..|+++|.+++-+-...+-++...+.+.......++.++.+|+.+.+ ++
T Consensus 11 ~~kvVvITGASsGIG~~lA~~la~~G~~l~lvar~~rrl~~v~~~l~~~~~~~~v~~~~~Dvs~~~~~~~~~~~~~~~fg 90 (282)
T KOG1205|consen 11 AGKVVLITGASSGIGEALAYELAKRGAKLVLVARRARRLERVAEELRKLGSLEKVLVLQLDVSDEESVKKFVEWAIRHFG 90 (282)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHhCCCceEEeehhhhhHHHHHHHHHHhCCcCccEEEeCccCCHHHHHHHHHHHHHhcC
Confidence 4678888899887 47777888898877777777777776554443322225899999998753 33
Q ss_pred CCcccccccccc
Q 018261 121 YFDICVANIPYQ 132 (359)
Q Consensus 121 ~fD~VvsNlPy~ 132 (359)
..|++|.|.=+.
T Consensus 91 ~vDvLVNNAG~~ 102 (282)
T KOG1205|consen 91 RVDVLVNNAGIS 102 (282)
T ss_pred CCCEEEecCccc
Confidence 579999886443
No 443
>PRK07904 short chain dehydrogenase; Provisional
Probab=53.67 E-value=61 Score=29.76 Aligned_cols=76 Identities=17% Similarity=0.225 Sum_probs=47.7
Q ss_pred CCCCEEEEEcCccc---HHHHHHHHcC-CeEEEEeCCHHH-HHHHHHHhhcCCCCCCeEEEEccccCCC-----------
Q 018261 55 KSTDVILEIGPGTG---NLTKKLLEAG-KMVIAVELDSRM-VLELQRRFQSTPYSNRLKVIQGDVLKTD----------- 118 (359)
Q Consensus 55 ~~~~~VLDIGcGtG---~lt~~La~~~-~~V~avDid~~~-i~~a~~~~~~~~~~~~v~~i~~D~~~~~----------- 118 (359)
..+.+||=.|++.| .++..|++.+ .+|+.++.++.- ++.+.+.+...+ ..+++++.+|+.+..
T Consensus 6 ~~~~~vlItGas~giG~~la~~l~~~gg~~V~~~~r~~~~~~~~~~~~l~~~~-~~~v~~~~~D~~~~~~~~~~~~~~~~ 84 (253)
T PRK07904 6 GNPQTILLLGGTSEIGLAICERYLKNAPARVVLAALPDDPRRDAAVAQMKAAG-ASSVEVIDFDALDTDSHPKVIDAAFA 84 (253)
T ss_pred CCCcEEEEEcCCcHHHHHHHHHHHhcCCCeEEEEeCCcchhHHHHHHHHHhcC-CCceEEEEecCCChHHHHHHHHHHHh
Confidence 45678999998654 2444455554 799999988763 454444443322 126888999986533
Q ss_pred CCCCccccccccc
Q 018261 119 LPYFDICVANIPY 131 (359)
Q Consensus 119 l~~fD~VvsNlPy 131 (359)
....|++|.|...
T Consensus 85 ~g~id~li~~ag~ 97 (253)
T PRK07904 85 GGDVDVAIVAFGL 97 (253)
T ss_pred cCCCCEEEEeeec
Confidence 1247877777644
No 444
>PRK08324 short chain dehydrogenase; Validated
Probab=53.66 E-value=54 Score=35.21 Aligned_cols=74 Identities=23% Similarity=0.284 Sum_probs=49.5
Q ss_pred CCCEEEEEcCccc---HHHHHHHHcCCeEEEEeCCHHHHHHHHHHhhcCCCCCCeEEEEccccCCC------------CC
Q 018261 56 STDVILEIGPGTG---NLTKKLLEAGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTD------------LP 120 (359)
Q Consensus 56 ~~~~VLDIGcGtG---~lt~~La~~~~~V~avDid~~~i~~a~~~~~~~~~~~~v~~i~~D~~~~~------------l~ 120 (359)
.+++||=.|++.| .+...|++.|.+|++++.++.-+..+.+.+... .++.++.+|+.+.. +.
T Consensus 421 ~gk~vLVTGasggIG~~la~~L~~~Ga~Vvl~~r~~~~~~~~~~~l~~~---~~v~~v~~Dvtd~~~v~~~~~~~~~~~g 497 (681)
T PRK08324 421 AGKVALVTGAAGGIGKATAKRLAAEGACVVLADLDEEAAEAAAAELGGP---DRALGVACDVTDEAAVQAAFEEAALAFG 497 (681)
T ss_pred CCCEEEEecCCCHHHHHHHHHHHHCcCEEEEEeCCHHHHHHHHHHHhcc---CcEEEEEecCCCHHHHHHHHHHHHHHcC
Confidence 4678998886433 234445556899999999988776665554332 26888888886532 12
Q ss_pred CCcccccccccc
Q 018261 121 YFDICVANIPYQ 132 (359)
Q Consensus 121 ~fD~VvsNlPy~ 132 (359)
.+|+||.|.-+.
T Consensus 498 ~iDvvI~~AG~~ 509 (681)
T PRK08324 498 GVDIVVSNAGIA 509 (681)
T ss_pred CCCEEEECCCCC
Confidence 478888876543
No 445
>TIGR01082 murC UDP-N-acetylmuramate--alanine ligase. UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase (murein tripeptide ligase) is described by TIGR01081.
Probab=53.53 E-value=23 Score=35.86 Aligned_cols=71 Identities=17% Similarity=0.252 Sum_probs=42.3
Q ss_pred cccH--HHHHHHHcCCeEEEEeCCHHHHHHHHHHhhcCCCCCCeEEEEccccCCCCCCCcccccccccccchHHHHHHHh
Q 018261 66 GTGN--LTKKLLEAGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTDLPYFDICVANIPYQISSPLTFKLLF 143 (359)
Q Consensus 66 GtG~--lt~~La~~~~~V~avDid~~~i~~a~~~~~~~~~~~~v~~i~~D~~~~~l~~fD~VvsNlPy~i~s~ii~~ll~ 143 (359)
|+|. ++..|.+.|.+|++.|..+.. .. +.+... .+.+..+ .....+..+|+||.++-.....|.+....+
T Consensus 9 gsGm~~la~~L~~~G~~v~~~D~~~~~--~~-~~l~~~----gi~~~~g-~~~~~~~~~d~vV~spgi~~~~p~~~~a~~ 80 (448)
T TIGR01082 9 GIGMSGIAEILLNRGYQVSGSDIAENA--TT-KRLEAL----GIPIYIG-HSAENLDDADVVVVSAAIKDDNPEIVEAKE 80 (448)
T ss_pred HHHHHHHHHHHHHCCCeEEEECCCcch--HH-HHHHHC----cCEEeCC-CCHHHCCCCCEEEECCCCCCCCHHHHHHHH
Confidence 4553 677788889999999976542 11 223222 3555544 211123458888887766666676665544
Q ss_pred c
Q 018261 144 H 144 (359)
Q Consensus 144 ~ 144 (359)
.
T Consensus 81 ~ 81 (448)
T TIGR01082 81 R 81 (448)
T ss_pred c
Confidence 3
No 446
>KOG0725 consensus Reductases with broad range of substrate specificities [General function prediction only]
Probab=53.10 E-value=2e+02 Score=27.08 Aligned_cols=78 Identities=23% Similarity=0.225 Sum_probs=56.5
Q ss_pred CCCEEEEEcCccc---HHHHHHHHcCCeEEEEeCCHHHHHHHHHHhhcCCC-CCCeEEEEccccCCC-------------
Q 018261 56 STDVILEIGPGTG---NLTKKLLEAGKMVIAVELDSRMVLELQRRFQSTPY-SNRLKVIQGDVLKTD------------- 118 (359)
Q Consensus 56 ~~~~VLDIGcGtG---~lt~~La~~~~~V~avDid~~~i~~a~~~~~~~~~-~~~v~~i~~D~~~~~------------- 118 (359)
.+..+|--|..+| .++..|++.|++|+..+.+++.+..+.+....... ..++..+.+|+.+.+
T Consensus 7 ~gkvalVTG~s~GIG~aia~~la~~Ga~v~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~l~~~~~~~~ 86 (270)
T KOG0725|consen 7 AGKVALVTGGSSGIGKAIALLLAKAGAKVVITGRSEERLEETAQELGGLGYTGGKVLAIVCDVSKEVDVEKLVEFAVEKF 86 (270)
T ss_pred CCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeeEEEECcCCCHHHHHHHHHHHHHHh
Confidence 5667788887776 56788888999999999999988777766544332 246888999987532
Q ss_pred CCCCccccccccccc
Q 018261 119 LPYFDICVANIPYQI 133 (359)
Q Consensus 119 l~~fD~VvsNlPy~i 133 (359)
+...|++|.|.-...
T Consensus 87 ~GkidiLvnnag~~~ 101 (270)
T KOG0725|consen 87 FGKIDILVNNAGALG 101 (270)
T ss_pred CCCCCEEEEcCCcCC
Confidence 235788888765444
No 447
>PRK06181 short chain dehydrogenase; Provisional
Probab=52.67 E-value=75 Score=28.93 Aligned_cols=69 Identities=19% Similarity=0.314 Sum_probs=44.2
Q ss_pred CEEEEEcCcccHHHH----HHHHcCCeEEEEeCCHHHHHHHHHHhhcCCCCCCeEEEEccccCCC------------CCC
Q 018261 58 DVILEIGPGTGNLTK----KLLEAGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTD------------LPY 121 (359)
Q Consensus 58 ~~VLDIGcGtG~lt~----~La~~~~~V~avDid~~~i~~a~~~~~~~~~~~~v~~i~~D~~~~~------------l~~ 121 (359)
.+||=.|+ +|.++. .|++.+.+|++++.++.-.+.+.+.+...+ .++.++.+|+.+.. ++.
T Consensus 2 ~~vlVtGa-sg~iG~~la~~l~~~g~~Vi~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~ 78 (263)
T PRK06181 2 KVVIITGA-SEGIGRALAVRLARAGAQLVLAARNETRLASLAQELADHG--GEALVVPTDVSDAEACERLIEAAVARFGG 78 (263)
T ss_pred CEEEEecC-CcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 35776775 344444 445568899999999776665555444333 36888899987642 124
Q ss_pred Cccccccc
Q 018261 122 FDICVANI 129 (359)
Q Consensus 122 fD~VvsNl 129 (359)
.|.||.|.
T Consensus 79 id~vi~~a 86 (263)
T PRK06181 79 IDILVNNA 86 (263)
T ss_pred CCEEEECC
Confidence 67777764
No 448
>PRK08703 short chain dehydrogenase; Provisional
Probab=52.61 E-value=1.7e+02 Score=26.09 Aligned_cols=60 Identities=22% Similarity=0.244 Sum_probs=37.3
Q ss_pred CCCEEEEEcCccc---HHHHHHHHcCCeEEEEeCCHHHHHHHHHHhhcCCCCCCeEEEEccccC
Q 018261 56 STDVILEIGPGTG---NLTKKLLEAGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLK 116 (359)
Q Consensus 56 ~~~~VLDIGcGtG---~lt~~La~~~~~V~avDid~~~i~~a~~~~~~~~~~~~v~~i~~D~~~ 116 (359)
++.+||=.|++.| .++..|++.+.+|++++.++.-.+.+...+...+. ..+.++..|+.+
T Consensus 5 ~~k~vlItG~sggiG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~~-~~~~~~~~D~~~ 67 (239)
T PRK08703 5 SDKTILVTGASQGLGEQVAKAYAAAGATVILVARHQKKLEKVYDAIVEAGH-PEPFAIRFDLMS 67 (239)
T ss_pred CCCEEEEECCCCcHHHHHHHHHHHcCCEEEEEeCChHHHHHHHHHHHHcCC-CCcceEEeeecc
Confidence 4568899996443 24445555689999999998766655554432221 135566677643
No 449
>PRK09186 flagellin modification protein A; Provisional
Probab=52.60 E-value=74 Score=28.73 Aligned_cols=74 Identities=28% Similarity=0.360 Sum_probs=46.1
Q ss_pred CCCEEEEEcCccc---HHHHHHHHcCCeEEEEeCCHHHHHHHHHHhhcCCCCCCeEEEEccccCCC------------CC
Q 018261 56 STDVILEIGPGTG---NLTKKLLEAGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTD------------LP 120 (359)
Q Consensus 56 ~~~~VLDIGcGtG---~lt~~La~~~~~V~avDid~~~i~~a~~~~~~~~~~~~v~~i~~D~~~~~------------l~ 120 (359)
.+.+||=.|++.| .+...|++.+.+|+.+..++.-++.+.+.+........+.++.+|+.+.. +.
T Consensus 3 ~~k~vlItGas~giG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~~~~ 82 (256)
T PRK09186 3 KGKTILITGAGGLIGSALVKAILEAGGIVIAADIDKEALNELLESLGKEFKSKKLSLVELDITDQESLEEFLSKSAEKYG 82 (256)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEecChHHHHHHHHHHHhhcCCCceeEEEecCCCHHHHHHHHHHHHHHcC
Confidence 3567888887543 23445555689999999888776666555432111124667788987632 12
Q ss_pred CCccccccc
Q 018261 121 YFDICVANI 129 (359)
Q Consensus 121 ~fD~VvsNl 129 (359)
..|.+|.|.
T Consensus 83 ~id~vi~~A 91 (256)
T PRK09186 83 KIDGAVNCA 91 (256)
T ss_pred CccEEEECC
Confidence 368888775
No 450
>PRK05650 short chain dehydrogenase; Provisional
Probab=52.57 E-value=71 Score=29.36 Aligned_cols=71 Identities=13% Similarity=0.096 Sum_probs=45.5
Q ss_pred EEEEEcCccc---HHHHHHHHcCCeEEEEeCCHHHHHHHHHHhhcCCCCCCeEEEEccccCCC------------CCCCc
Q 018261 59 VILEIGPGTG---NLTKKLLEAGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTD------------LPYFD 123 (359)
Q Consensus 59 ~VLDIGcGtG---~lt~~La~~~~~V~avDid~~~i~~a~~~~~~~~~~~~v~~i~~D~~~~~------------l~~fD 123 (359)
+||=.|+..| .++..|++.+.+|+.++.++.-.+.+...+...+ .++.++.+|+.+.. ...+|
T Consensus 2 ~vlVtGasggIG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~i~~~~~~id 79 (270)
T PRK05650 2 RVMITGAASGLGRAIALRWAREGWRLALADVNEEGGEETLKLLREAG--GDGFYQRCDVRDYSQLTALAQACEEKWGGID 79 (270)
T ss_pred EEEEecCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CceEEEEccCCCHHHHHHHHHHHHHHcCCCC
Confidence 5676776443 2445556668999999998876665554443322 36788899987532 12478
Q ss_pred cccccccc
Q 018261 124 ICVANIPY 131 (359)
Q Consensus 124 ~VvsNlPy 131 (359)
.+|.|...
T Consensus 80 ~lI~~ag~ 87 (270)
T PRK05650 80 VIVNNAGV 87 (270)
T ss_pred EEEECCCC
Confidence 88887543
No 451
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=52.56 E-value=9.4 Score=38.24 Aligned_cols=20 Identities=15% Similarity=0.356 Sum_probs=17.0
Q ss_pred CCEEEEEcCcccHHHHHHHH
Q 018261 57 TDVILEIGPGTGNLTKKLLE 76 (359)
Q Consensus 57 ~~~VLDIGcGtG~lt~~La~ 76 (359)
.-+|+|+|||+|.+|..+..
T Consensus 64 ~~~iaDlGcs~G~ntl~~vs 83 (386)
T PLN02668 64 PFTAVDLGCSSGSNTIHIID 83 (386)
T ss_pred ceeEEEecCCCCccHHHHHH
Confidence 55899999999999887764
No 452
>PRK08416 7-alpha-hydroxysteroid dehydrogenase; Provisional
Probab=52.33 E-value=1.9e+02 Score=26.39 Aligned_cols=72 Identities=10% Similarity=0.167 Sum_probs=45.6
Q ss_pred CCCEEEEEcCccc---HHHHHHHHcCCeEEEEe-CCHHHHHHHHHHhhc-CCCCCCeEEEEccccCCC------------
Q 018261 56 STDVILEIGPGTG---NLTKKLLEAGKMVIAVE-LDSRMVLELQRRFQS-TPYSNRLKVIQGDVLKTD------------ 118 (359)
Q Consensus 56 ~~~~VLDIGcGtG---~lt~~La~~~~~V~avD-id~~~i~~a~~~~~~-~~~~~~v~~i~~D~~~~~------------ 118 (359)
.+.++|=.|++.| .++..|++.+.+|+.+. .+++.++.+.+.+.. .+ .++.++..|+.+..
T Consensus 7 ~~k~vlItGas~gIG~~ia~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~ 84 (260)
T PRK08416 7 KGKTLVISGGTRGIGKAIVYEFAQSGVNIAFTYNSNVEEANKIAEDLEQKYG--IKAKAYPLNILEPETYKELFKKIDED 84 (260)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHHhcC--CceEEEEcCCCCHHHHHHHHHHHHHh
Confidence 4678888887765 35666777789988774 345444443333322 12 26788999987632
Q ss_pred CCCCccccccc
Q 018261 119 LPYFDICVANI 129 (359)
Q Consensus 119 l~~fD~VvsNl 129 (359)
+..+|++|.|.
T Consensus 85 ~g~id~lv~nA 95 (260)
T PRK08416 85 FDRVDFFISNA 95 (260)
T ss_pred cCCccEEEECc
Confidence 23568888876
No 453
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=52.26 E-value=55 Score=31.52 Aligned_cols=47 Identities=17% Similarity=0.295 Sum_probs=33.8
Q ss_pred HHcCCCCCCEEEEEcCc-ccHHHHHHHHc-CC-eEEEEeCCHHHHHHHHH
Q 018261 50 QKAGIKSTDVILEIGPG-TGNLTKKLLEA-GK-MVIAVELDSRMVLELQR 96 (359)
Q Consensus 50 ~~~~~~~~~~VLDIGcG-tG~lt~~La~~-~~-~V~avDid~~~i~~a~~ 96 (359)
......++++||=+|+| .|.++..+++. +. +|++++.+++-++.+++
T Consensus 163 ~~~~~~~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~ 212 (343)
T PRK09880 163 HQAGDLQGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLARE 212 (343)
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHH
Confidence 44455678899988875 34455566655 55 79999999998888876
No 454
>PRK07067 sorbitol dehydrogenase; Provisional
Probab=52.03 E-value=69 Score=29.09 Aligned_cols=69 Identities=19% Similarity=0.246 Sum_probs=44.8
Q ss_pred CCEEEEEcCccc---HHHHHHHHcCCeEEEEeCCHHHHHHHHHHhhcCCCCCCeEEEEccccCCC------------CCC
Q 018261 57 TDVILEIGPGTG---NLTKKLLEAGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTD------------LPY 121 (359)
Q Consensus 57 ~~~VLDIGcGtG---~lt~~La~~~~~V~avDid~~~i~~a~~~~~~~~~~~~v~~i~~D~~~~~------------l~~ 121 (359)
+.++|=.|+..| .++..|++.|.+|+.++.+......+.+... .++.++.+|+.+.. ++.
T Consensus 6 ~~~vlItGas~~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~-----~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 80 (257)
T PRK07067 6 GKVALLTGAASGIGEAVAERYLAEGARVVIADIKPARARLAALEIG-----PAAIAVSLDVTRQDSIDRIVAAAVERFGG 80 (257)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHhC-----CceEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 467888885433 2344455568999999999887666555432 25788888886532 124
Q ss_pred Ccccccccc
Q 018261 122 FDICVANIP 130 (359)
Q Consensus 122 fD~VvsNlP 130 (359)
.|.+|.|..
T Consensus 81 id~li~~ag 89 (257)
T PRK07067 81 IDILFNNAA 89 (257)
T ss_pred CCEEEECCC
Confidence 677777654
No 455
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=52.03 E-value=1.1e+02 Score=28.52 Aligned_cols=72 Identities=25% Similarity=0.320 Sum_probs=42.3
Q ss_pred CCCCEEEEEcCcccH---HHHHHHHcCCeEEEEeCCHHHHHHHHHHhhcCCCCCCeEEEEccccCCCCCCCccccccccc
Q 018261 55 KSTDVILEIGPGTGN---LTKKLLEAGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTDLPYFDICVANIPY 131 (359)
Q Consensus 55 ~~~~~VLDIGcGtG~---lt~~La~~~~~V~avDid~~~i~~a~~~~~~~~~~~~v~~i~~D~~~~~l~~fD~VvsNlPy 131 (359)
..+.+++=+|+| |. +...|++.+.+|+.++.+++-.+.+.+.+...+ .+.....+ +.....+|+||...|.
T Consensus 115 ~~~k~vliiGaG-g~g~aia~~L~~~g~~v~v~~R~~~~~~~la~~~~~~~---~~~~~~~~--~~~~~~~DivInatp~ 188 (270)
T TIGR00507 115 RPNQRVLIIGAG-GAARAVALPLLKADCNVIIANRTVSKAEELAERFQRYG---EIQAFSMD--ELPLHRVDLIINATSA 188 (270)
T ss_pred ccCCEEEEEcCc-HHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhhcC---ceEEechh--hhcccCccEEEECCCC
Confidence 346789999997 42 233444557899999998776655555543322 22222211 1223457888887775
Q ss_pred c
Q 018261 132 Q 132 (359)
Q Consensus 132 ~ 132 (359)
.
T Consensus 189 g 189 (270)
T TIGR00507 189 G 189 (270)
T ss_pred C
Confidence 3
No 456
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=51.56 E-value=9.1 Score=39.22 Aligned_cols=59 Identities=29% Similarity=0.267 Sum_probs=43.0
Q ss_pred CCEEEEEcCcccHHHHHHHHc-C-CeEEEEeCCHHHHHHHHHHhhcCCCCCCeEEEEccccC
Q 018261 57 TDVILEIGPGTGNLTKKLLEA-G-KMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLK 116 (359)
Q Consensus 57 ~~~VLDIGcGtG~lt~~La~~-~-~~V~avDid~~~i~~a~~~~~~~~~~~~v~~i~~D~~~ 116 (359)
...+|=||.|.|.++..|.-. . ..++|||+||.|+..++..+.-..- .+..+...|.++
T Consensus 296 ~~~~lvvg~ggG~l~sfl~~~~p~~~i~~ve~dP~~l~va~q~f~f~q~-~r~~V~i~dGl~ 356 (482)
T KOG2352|consen 296 GGKQLVVGLGGGGLPSFLHMSLPKFQITAVEIDPEMLEVATQYFGFMQS-DRNKVHIADGLD 356 (482)
T ss_pred cCcEEEEecCCCccccceeeecCccceeEEEEChhHhhccHhhhchhhh-hhhhhhHhhchH
Confidence 456889999999998877544 3 7899999999999999988643221 134555555544
No 457
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=51.49 E-value=48 Score=32.37 Aligned_cols=48 Identities=25% Similarity=0.330 Sum_probs=34.8
Q ss_pred HHHcCCCCCCEEEEEcCcc-cHHHHHHHHc-CC-eEEEEeCCHHHHHHHHH
Q 018261 49 VQKAGIKSTDVILEIGPGT-GNLTKKLLEA-GK-MVIAVELDSRMVLELQR 96 (359)
Q Consensus 49 v~~~~~~~~~~VLDIGcGt-G~lt~~La~~-~~-~V~avDid~~~i~~a~~ 96 (359)
.....+.++++||=+|+|. |.++..+++. |. +|+++|.++.-.+.+++
T Consensus 184 ~~~~~i~~g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a~~ 234 (371)
T cd08281 184 VNTAGVRPGQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDKLALARE 234 (371)
T ss_pred HhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHH
Confidence 3445677888888888753 4455566655 66 69999999998888765
No 458
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=51.18 E-value=1e+02 Score=31.32 Aligned_cols=81 Identities=19% Similarity=0.140 Sum_probs=47.3
Q ss_pred CCCEEEEEcCcccHH--HHHHHHcCCeEEEEeCCHH-HHHHHHHHhhcCCCCCCeEEEEccccCCCCCCCcccccccccc
Q 018261 56 STDVILEIGPGTGNL--TKKLLEAGKMVIAVELDSR-MVLELQRRFQSTPYSNRLKVIQGDVLKTDLPYFDICVANIPYQ 132 (359)
Q Consensus 56 ~~~~VLDIGcGtG~l--t~~La~~~~~V~avDid~~-~i~~a~~~~~~~~~~~~v~~i~~D~~~~~l~~fD~VvsNlPy~ 132 (359)
.+.+|+=||.|.-.+ +..|+++|.+|+.+|.++. ......+.+... .+++..++... ....+|+||..+-..
T Consensus 15 ~~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~~~~~~~~~~~l~~~----gv~~~~~~~~~-~~~~~D~Vv~s~Gi~ 89 (480)
T PRK01438 15 QGLRVVVAGLGVSGFAAADALLELGARVTVVDDGDDERHRALAAILEAL----GATVRLGPGPT-LPEDTDLVVTSPGWR 89 (480)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhhhHHHHHHHHHc----CCEEEECCCcc-ccCCCCEEEECCCcC
Confidence 456899999985443 3445566899999996643 333333444433 46666655433 123578777665444
Q ss_pred cchHHHHHH
Q 018261 133 ISSPLTFKL 141 (359)
Q Consensus 133 i~s~ii~~l 141 (359)
...|++...
T Consensus 90 ~~~~~~~~a 98 (480)
T PRK01438 90 PDAPLLAAA 98 (480)
T ss_pred CCCHHHHHH
Confidence 455554443
No 459
>PRK06138 short chain dehydrogenase; Provisional
Probab=51.09 E-value=79 Score=28.39 Aligned_cols=73 Identities=22% Similarity=0.319 Sum_probs=47.0
Q ss_pred CCCEEEEEcCccc---HHHHHHHHcCCeEEEEeCCHHHHHHHHHHhhcCCCCCCeEEEEccccCCC------------CC
Q 018261 56 STDVILEIGPGTG---NLTKKLLEAGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTD------------LP 120 (359)
Q Consensus 56 ~~~~VLDIGcGtG---~lt~~La~~~~~V~avDid~~~i~~a~~~~~~~~~~~~v~~i~~D~~~~~------------l~ 120 (359)
.+.++|=.|+..| .++..|++.|.+|+++.-++.......+.... + .++.++.+|+.+.. ++
T Consensus 4 ~~k~~lItG~sg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~-~--~~~~~~~~D~~~~~~~~~~~~~i~~~~~ 80 (252)
T PRK06138 4 AGRVAIVTGAGSGIGRATAKLFAREGARVVVADRDAEAAERVAAAIAA-G--GRAFARQGDVGSAEAVEALVDFVAARWG 80 (252)
T ss_pred CCcEEEEeCCCchHHHHHHHHHHHCCCeEEEecCCHHHHHHHHHHHhc-C--CeEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 3567888888433 23344555688999999887765555444431 1 36888999987632 13
Q ss_pred CCccccccccc
Q 018261 121 YFDICVANIPY 131 (359)
Q Consensus 121 ~fD~VvsNlPy 131 (359)
.+|.||.+..+
T Consensus 81 ~id~vi~~ag~ 91 (252)
T PRK06138 81 RLDVLVNNAGF 91 (252)
T ss_pred CCCEEEECCCC
Confidence 57887776554
No 460
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=51.05 E-value=54 Score=31.82 Aligned_cols=48 Identities=21% Similarity=0.241 Sum_probs=37.5
Q ss_pred HHcCCCCCCEEEEEcC--cccHHHHHHHHc-CCeEEEEeCCHHHHHHHHHH
Q 018261 50 QKAGIKSTDVILEIGP--GTGNLTKKLLEA-GKMVIAVELDSRMVLELQRR 97 (359)
Q Consensus 50 ~~~~~~~~~~VLDIGc--GtG~lt~~La~~-~~~V~avDid~~~i~~a~~~ 97 (359)
....+.++++||=.|+ |.|.++..+++. |.+|++++.+++-.+.+++.
T Consensus 152 ~~~~~~~g~~VlV~GaaG~vG~~aiqlAk~~G~~Vi~~~~~~~k~~~~~~~ 202 (348)
T PLN03154 152 EVCSPKKGDSVFVSAASGAVGQLVGQLAKLHGCYVVGSAGSSQKVDLLKNK 202 (348)
T ss_pred HhcCCCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHh
Confidence 3456788999999998 477788888876 78999999998877776643
No 461
>PRK12743 oxidoreductase; Provisional
Probab=50.91 E-value=77 Score=28.87 Aligned_cols=72 Identities=21% Similarity=0.148 Sum_probs=43.7
Q ss_pred CCEEEEEcCcccHHHH----HHHHcCCeEEEEe-CCHHHHHHHHHHhhcCCCCCCeEEEEccccCCC------------C
Q 018261 57 TDVILEIGPGTGNLTK----KLLEAGKMVIAVE-LDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTD------------L 119 (359)
Q Consensus 57 ~~~VLDIGcGtG~lt~----~La~~~~~V~avD-id~~~i~~a~~~~~~~~~~~~v~~i~~D~~~~~------------l 119 (359)
+.+||=.|+..| ++. .|++.|.+|+.+. .+....+.+.+.+...+ .++.++.+|+.+.. +
T Consensus 2 ~k~vlItGas~g-iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 78 (256)
T PRK12743 2 AQVAIVTASDSG-IGKACALLLAQQGFDIGITWHSDEEGAKETAEEVRSHG--VRAEIRQLDLSDLPEGAQALDKLIQRL 78 (256)
T ss_pred CCEEEEECCCch-HHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHHhcC--CceEEEEccCCCHHHHHHHHHHHHHHc
Confidence 357888886544 444 4445588998775 34444444444443333 36888999987632 1
Q ss_pred CCCccccccccc
Q 018261 120 PYFDICVANIPY 131 (359)
Q Consensus 120 ~~fD~VvsNlPy 131 (359)
...|.+|.|.-+
T Consensus 79 ~~id~li~~ag~ 90 (256)
T PRK12743 79 GRIDVLVNNAGA 90 (256)
T ss_pred CCCCEEEECCCC
Confidence 346888877543
No 462
>COG2961 ComJ Protein involved in catabolism of external DNA [General function prediction only]
Probab=50.65 E-value=40 Score=31.84 Aligned_cols=73 Identities=23% Similarity=0.436 Sum_probs=60.0
Q ss_pred EEEcCcccHHHHHHHHcCCeEEEEeCCHHHHHHHHHHhhcCCCCCCeEEEEccccCC---CCC---CCcccccccccccc
Q 018261 61 LEIGPGTGNLTKKLLEAGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKT---DLP---YFDICVANIPYQIS 134 (359)
Q Consensus 61 LDIGcGtG~lt~~La~~~~~V~avDid~~~i~~a~~~~~~~~~~~~v~~i~~D~~~~---~l~---~fD~VvsNlPy~i~ 134 (359)
|..=||+=.+++.|.+..-++.++|+-|.=...++.++.... ++.+..+|.... .+| .--+|+..+||...
T Consensus 93 l~~YpGSP~lA~~llR~qDRl~l~ELHp~D~~~L~~~f~~d~---~vrv~~~DG~~~l~a~LPP~erRglVLIDPPfE~~ 169 (279)
T COG2961 93 LRYYPGSPLLARQLLREQDRLVLTELHPSDAPLLRNNFAGDR---RVRVLRGDGFLALKAHLPPKERRGLVLIDPPFELK 169 (279)
T ss_pred cccCCCCHHHHHHHcchhceeeeeecCccHHHHHHHHhCCCc---ceEEEecCcHHHHhhhCCCCCcceEEEeCCCcccc
Confidence 889999999999999888899999999999999999987543 899999997642 222 23478999999866
Q ss_pred hH
Q 018261 135 SP 136 (359)
Q Consensus 135 s~ 136 (359)
.+
T Consensus 170 ~e 171 (279)
T COG2961 170 DE 171 (279)
T ss_pred cH
Confidence 54
No 463
>PRK12859 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=50.54 E-value=2e+02 Score=26.18 Aligned_cols=75 Identities=24% Similarity=0.337 Sum_probs=43.8
Q ss_pred CCCEEEEEcCc----ccH-HHHHHHHcCCeEEEEeCC-----------HHHHHHHHHHhhcCCCCCCeEEEEccccCCC-
Q 018261 56 STDVILEIGPG----TGN-LTKKLLEAGKMVIAVELD-----------SRMVLELQRRFQSTPYSNRLKVIQGDVLKTD- 118 (359)
Q Consensus 56 ~~~~VLDIGcG----tG~-lt~~La~~~~~V~avDid-----------~~~i~~a~~~~~~~~~~~~v~~i~~D~~~~~- 118 (359)
.+.+||=.|++ .|. +...|++.|.+|+.++.. ..-...+.+.+...+ .++.++.+|+.+..
T Consensus 5 ~~k~vlVtGas~~~giG~~~a~~l~~~G~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g--~~~~~~~~D~~~~~~ 82 (256)
T PRK12859 5 KNKVAVVTGVSRLDGIGAAICKELAEAGADIFFTYWTAYDKEMPWGVDQDEQIQLQEELLKNG--VKVSSMELDLTQNDA 82 (256)
T ss_pred CCcEEEEECCCCCCChHHHHHHHHHHCCCeEEEEecccccccccccccHHHHHHHHHHHHhcC--CeEEEEEcCCCCHHH
Confidence 46788999985 342 445566668888876421 111222333343333 26778888886532
Q ss_pred -----------CCCCcccccccccc
Q 018261 119 -----------LPYFDICVANIPYQ 132 (359)
Q Consensus 119 -----------l~~fD~VvsNlPy~ 132 (359)
++..|.+|.|.-+.
T Consensus 83 i~~~~~~~~~~~g~id~li~~ag~~ 107 (256)
T PRK12859 83 PKELLNKVTEQLGYPHILVNNAAYS 107 (256)
T ss_pred HHHHHHHHHHHcCCCcEEEECCCCC
Confidence 23468888886543
No 464
>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]
Probab=50.44 E-value=18 Score=35.23 Aligned_cols=37 Identities=27% Similarity=0.215 Sum_probs=32.5
Q ss_pred CCEEEEEcCcccHHHHHHHHcCCeEEEEeCCHHHHHH
Q 018261 57 TDVILEIGPGTGNLTKKLLEAGKMVIAVELDSRMVLE 93 (359)
Q Consensus 57 ~~~VLDIGcGtG~lt~~La~~~~~V~avDid~~~i~~ 93 (359)
.-+||=.|||.|.|+..|+..|.++-|-|+|--|+-.
T Consensus 151 ki~iLvPGaGlGRLa~dla~~G~~~qGNEfSy~Mli~ 187 (369)
T KOG2798|consen 151 KIRILVPGAGLGRLAYDLACLGFKCQGNEFSYFMLIC 187 (369)
T ss_pred CceEEecCCCchhHHHHHHHhcccccccHHHHHHHHH
Confidence 4589999999999999999999999999999887643
No 465
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=50.02 E-value=51 Score=30.75 Aligned_cols=47 Identities=21% Similarity=0.193 Sum_probs=32.8
Q ss_pred HHcCCCCCCEEEEEcCc-ccHHHHHHHHc-CCe-EEEEeCCHHHHHHHHH
Q 018261 50 QKAGIKSTDVILEIGPG-TGNLTKKLLEA-GKM-VIAVELDSRMVLELQR 96 (359)
Q Consensus 50 ~~~~~~~~~~VLDIGcG-tG~lt~~La~~-~~~-V~avDid~~~i~~a~~ 96 (359)
..+...++++||=+|+| .|.++..+++. +.+ |+++|.++.-.+.+++
T Consensus 114 ~~~~~~~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~a~~ 163 (280)
T TIGR03366 114 EAAGDLKGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRRELALS 163 (280)
T ss_pred HhccCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH
Confidence 34455678899988875 34455556655 655 9999999887777765
No 466
>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.
Probab=49.96 E-value=37 Score=33.25 Aligned_cols=23 Identities=13% Similarity=0.072 Sum_probs=16.6
Q ss_pred CCCCCEEEEEcCcccHHHHHHHH
Q 018261 54 IKSTDVILEIGPGTGNLTKKLLE 76 (359)
Q Consensus 54 ~~~~~~VLDIGcGtG~lt~~La~ 76 (359)
....-+|+|+||.+|..|..+..
T Consensus 14 ~~~~~~iaD~GcS~G~Nsl~~~~ 36 (334)
T PF03492_consen 14 NPKPFRIADLGCSSGPNSLLAVS 36 (334)
T ss_dssp TTTEEEEEEES--SSHHHHHHHH
T ss_pred CCCceEEEecCCCCCccHHHHHH
Confidence 34455899999999999988764
No 467
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=49.83 E-value=1.1e+02 Score=29.04 Aligned_cols=73 Identities=15% Similarity=0.155 Sum_probs=39.9
Q ss_pred CCCEEEEEcCcccH---HHHHHHHcCC-eEEEEeCCH---HHHHHHHHHhhcCCCCCCeEEEEccccCCC-----CCCCc
Q 018261 56 STDVILEIGPGTGN---LTKKLLEAGK-MVIAVELDS---RMVLELQRRFQSTPYSNRLKVIQGDVLKTD-----LPYFD 123 (359)
Q Consensus 56 ~~~~VLDIGcGtG~---lt~~La~~~~-~V~avDid~---~~i~~a~~~~~~~~~~~~v~~i~~D~~~~~-----l~~fD 123 (359)
.+.++|=+|+| |. +...|++.|. +|+.++.++ +..+.+.+.+.... ..+.+...|+.+.. +...|
T Consensus 125 ~~k~vlI~GAG-GagrAia~~La~~G~~~V~I~~R~~~~~~~a~~l~~~l~~~~--~~~~~~~~d~~~~~~~~~~~~~~D 201 (289)
T PRK12548 125 KGKKLTVIGAG-GAATAIQVQCALDGAKEITIFNIKDDFYERAEQTAEKIKQEV--PECIVNVYDLNDTEKLKAEIASSD 201 (289)
T ss_pred CCCEEEEECCc-HHHHHHHHHHHHCCCCEEEEEeCCchHHHHHHHHHHHHhhcC--CCceeEEechhhhhHHHhhhccCC
Confidence 46789999997 53 2333455665 499999886 33333333332211 13344445554321 22468
Q ss_pred cccccccc
Q 018261 124 ICVANIPY 131 (359)
Q Consensus 124 ~VvsNlPy 131 (359)
+||.+.|-
T Consensus 202 ilINaTp~ 209 (289)
T PRK12548 202 ILVNATLV 209 (289)
T ss_pred EEEEeCCC
Confidence 88877664
No 468
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=49.63 E-value=42 Score=32.45 Aligned_cols=44 Identities=20% Similarity=0.206 Sum_probs=31.8
Q ss_pred CCCCCCEEEEEcCcc-cHHHHHHHHc---CCeEEEEeCCHHHHHHHHH
Q 018261 53 GIKSTDVILEIGPGT-GNLTKKLLEA---GKMVIAVELDSRMVLELQR 96 (359)
Q Consensus 53 ~~~~~~~VLDIGcGt-G~lt~~La~~---~~~V~avDid~~~i~~a~~ 96 (359)
.+.++++||=+|||. |.++..++++ +.+|+++|.++.-++.+++
T Consensus 160 ~~~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~ 207 (341)
T cd08237 160 AHKDRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSF 207 (341)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhh
Confidence 456789999999864 3344555553 3689999999987777764
No 469
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=49.51 E-value=49 Score=32.04 Aligned_cols=47 Identities=28% Similarity=0.396 Sum_probs=34.2
Q ss_pred HHcCCCCCCEEEEEcCcc-cHHHHHHHHc-CC-eEEEEeCCHHHHHHHHH
Q 018261 50 QKAGIKSTDVILEIGPGT-GNLTKKLLEA-GK-MVIAVELDSRMVLELQR 96 (359)
Q Consensus 50 ~~~~~~~~~~VLDIGcGt-G~lt~~La~~-~~-~V~avDid~~~i~~a~~ 96 (359)
....+.++++||=+|+|. |.++..+++. +. +|++++.++.-.+.+++
T Consensus 170 ~~~~~~~g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~~~~~~ 219 (358)
T TIGR03451 170 NTGGVKRGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDRKLEWARE 219 (358)
T ss_pred hccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH
Confidence 345667889999888753 4455566665 65 59999999988888754
No 470
>PRK07576 short chain dehydrogenase; Provisional
Probab=49.35 E-value=90 Score=28.68 Aligned_cols=71 Identities=15% Similarity=0.141 Sum_probs=45.5
Q ss_pred CCCEEEEEcCcccHHHH----HHHHcCCeEEEEeCCHHHHHHHHHHhhcCCCCCCeEEEEccccCCC------------C
Q 018261 56 STDVILEIGPGTGNLTK----KLLEAGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTD------------L 119 (359)
Q Consensus 56 ~~~~VLDIGcGtG~lt~----~La~~~~~V~avDid~~~i~~a~~~~~~~~~~~~v~~i~~D~~~~~------------l 119 (359)
++.++|=.|. +|.++. .|++.|.+|++++.++.-+....+.+...+ .++.++..|+.+.. +
T Consensus 8 ~~k~ilItGa-sggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~i~~~~~~~~~~~ 84 (264)
T PRK07576 8 AGKNVVVVGG-TSGINLGIAQAFARAGANVAVASRSQEKVDAAVAQLQQAG--PEGLGVSADVRDYAAVEAAFAQIADEF 84 (264)
T ss_pred CCCEEEEECC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhC--CceEEEECCCCCHHHHHHHHHHHHHHc
Confidence 4568888885 444444 455568899999998876655544443322 25677888886532 1
Q ss_pred CCCccccccc
Q 018261 120 PYFDICVANI 129 (359)
Q Consensus 120 ~~fD~VvsNl 129 (359)
...|.+|.|.
T Consensus 85 ~~iD~vi~~a 94 (264)
T PRK07576 85 GPIDVLVSGA 94 (264)
T ss_pred CCCCEEEECC
Confidence 2468888765
No 471
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=49.34 E-value=49 Score=37.51 Aligned_cols=82 Identities=16% Similarity=0.170 Sum_probs=52.5
Q ss_pred CCEEEEEcCcc-cHHHH-HHHHc-CC-------------eEEEEeCCHHHHHHHHHHhhcCCCCCCeEEEEccccCCC--
Q 018261 57 TDVILEIGPGT-GNLTK-KLLEA-GK-------------MVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTD-- 118 (359)
Q Consensus 57 ~~~VLDIGcGt-G~lt~-~La~~-~~-------------~V~avDid~~~i~~a~~~~~~~~~~~~v~~i~~D~~~~~-- 118 (359)
..+|+=||||. |.... .|++. .. .|+..|.++...+.+.+.. + +++.+..|+.+..
T Consensus 569 ~~rIlVLGAG~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~~~~a~~la~~~---~---~~~~v~lDv~D~e~L 642 (1042)
T PLN02819 569 SQNVLILGAGRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLYLKDAKETVEGI---E---NAEAVQLDVSDSESL 642 (1042)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCcCccccccccccccccEEEEECCCHHHHHHHHHhc---C---CCceEEeecCCHHHH
Confidence 45899999973 54433 33333 22 3888999987666555543 1 4455556554321
Q ss_pred ---CCCCcccccccccccchHHHHHHHhc
Q 018261 119 ---LPYFDICVANIPYQISSPLTFKLLFH 144 (359)
Q Consensus 119 ---l~~fD~VvsNlPy~i~s~ii~~ll~~ 144 (359)
....|+|++-+|+....++....+++
T Consensus 643 ~~~v~~~DaVIsalP~~~H~~VAkaAiea 671 (1042)
T PLN02819 643 LKYVSQVDVVISLLPASCHAVVAKACIEL 671 (1042)
T ss_pred HHhhcCCCEEEECCCchhhHHHHHHHHHc
Confidence 13589999999998877777766665
No 472
>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]
Probab=49.05 E-value=44 Score=32.72 Aligned_cols=51 Identities=14% Similarity=0.189 Sum_probs=38.3
Q ss_pred HHHHHcCCCCCCEEEEEcCcccHHHHHHH-Hc--CCeEEEEeCCHHHHHHHHHH
Q 018261 47 SIVQKAGIKSTDVILEIGPGTGNLTKKLL-EA--GKMVIAVELDSRMVLELQRR 97 (359)
Q Consensus 47 ~iv~~~~~~~~~~VLDIGcGtG~lt~~La-~~--~~~V~avDid~~~i~~a~~~ 97 (359)
.+++.+.+.++.+|.=+|+|.=.++...- +. +.+++|||++++-.+.|++.
T Consensus 183 Aa~~~Akv~~GstvAVfGLG~VGLav~~Gaka~GAsrIIgvDiN~~Kf~~ak~f 236 (375)
T KOG0022|consen 183 AAWNTAKVEPGSTVAVFGLGGVGLAVAMGAKAAGASRIIGVDINPDKFEKAKEF 236 (375)
T ss_pred hhhhhcccCCCCEEEEEecchHHHHHHHhHHhcCcccEEEEecCHHHHHHHHhc
Confidence 34556778888999999988766665543 32 37999999999998888763
No 473
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=49.04 E-value=24 Score=28.47 Aligned_cols=32 Identities=25% Similarity=0.303 Sum_probs=27.4
Q ss_pred cccHHHHHHHHc-CCeEEEEeCCHHHHHHHHHH
Q 018261 66 GTGNLTKKLLEA-GKMVIAVELDSRMVLELQRR 97 (359)
Q Consensus 66 GtG~lt~~La~~-~~~V~avDid~~~i~~a~~~ 97 (359)
|.|.++..+++. |.+|+++|.++.-.+.+++.
T Consensus 1 ~vG~~a~q~ak~~G~~vi~~~~~~~k~~~~~~~ 33 (130)
T PF00107_consen 1 GVGLMAIQLAKAMGAKVIATDRSEEKLELAKEL 33 (130)
T ss_dssp HHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHT
T ss_pred ChHHHHHHHHHHcCCEEEEEECCHHHHHHHHhh
Confidence 568888888876 89999999999988888764
No 474
>COG0099 RpsM Ribosomal protein S13 [Translation, ribosomal structure and biogenesis]
Probab=48.92 E-value=30 Score=28.81 Aligned_cols=34 Identities=18% Similarity=0.331 Sum_probs=30.4
Q ss_pred HHHHHHHHHhCCCCC-chhccCCHHHHHHHHHHHh
Q 018261 319 KDKVLAVLREGQFEE-KRASKLTQQEFLYLLSLFN 352 (359)
Q Consensus 319 ~~~i~~~l~~~~~~~-~r~~~l~~~~~~~l~~~~~ 352 (359)
+....++++.+||++ +|...||.||..+|-+++.
T Consensus 27 ~~~a~~I~~~~gi~~~~r~~eLteeei~~ir~~i~ 61 (121)
T COG0099 27 RRRAKEICKKAGIDPDKRVGELTEEEIERLRDAIQ 61 (121)
T ss_pred HHHHHHHHHHcCCCHhHhhccCCHHHHHHHHHHHH
Confidence 566789999999997 7999999999999988876
No 475
>KOG2811 consensus Uncharacterized conserved protein [Function unknown]
Probab=48.87 E-value=47 Score=33.10 Aligned_cols=65 Identities=18% Similarity=0.192 Sum_probs=40.6
Q ss_pred CCEEEEEcCcccHHHHHHHHc--CCeEEE---EeCCHHHHHHHHHHhhcCCCCCCeEEEEccccCCCCCCCc
Q 018261 57 TDVILEIGPGTGNLTKKLLEA--GKMVIA---VELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTDLPYFD 123 (359)
Q Consensus 57 ~~~VLDIGcGtG~lt~~La~~--~~~V~a---vDid~~~i~~a~~~~~~~~~~~~v~~i~~D~~~~~l~~fD 123 (359)
+..++|.|||-|.|+..++.. ...|+- +|-...-...=++....+. ..++-+..|+.++.+..++
T Consensus 183 ~~~~vEFGAGrg~Ls~~vs~~l~~~~~~l~vlvdR~s~R~K~D~k~~~~~~--~vi~R~riDI~dLkL~~i~ 252 (420)
T KOG2811|consen 183 SSCFVEFGAGRGELSRWVSDCLQIQNVYLFVLVDRKSSRLKFDRKLRNKNS--LVIKRIRIDIEDLKLNAIP 252 (420)
T ss_pred cceEEEecCCchHHHHHHHHHhccccEEEEEeecccchhhhhhhhhhccCc--chhheeEeeHHhcCccccc
Confidence 368999999999999999865 234444 6655444333333333221 1455677888887765444
No 476
>PRK06603 enoyl-(acyl carrier protein) reductase; Provisional
Probab=48.82 E-value=84 Score=28.90 Aligned_cols=73 Identities=11% Similarity=0.035 Sum_probs=44.0
Q ss_pred CCCEEEEEcCcc----c-HHHHHHHHcCCeEEEEeCCHHHHHHHHHHhhcCCCCCCeEEEEccccCCC------------
Q 018261 56 STDVILEIGPGT----G-NLTKKLLEAGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTD------------ 118 (359)
Q Consensus 56 ~~~~VLDIGcGt----G-~lt~~La~~~~~V~avDid~~~i~~a~~~~~~~~~~~~v~~i~~D~~~~~------------ 118 (359)
.+..+|=.|++. | .++..|++.|++|+.++.++...+.+++.....+ ...++.+|+.+..
T Consensus 7 ~~k~~lITGas~~~GIG~a~a~~la~~G~~v~~~~r~~~~~~~~~~l~~~~g---~~~~~~~Dv~~~~~v~~~~~~~~~~ 83 (260)
T PRK06603 7 QGKKGLITGIANNMSISWAIAQLAKKHGAELWFTYQSEVLEKRVKPLAEEIG---CNFVSELDVTNPKSISNLFDDIKEK 83 (260)
T ss_pred CCcEEEEECCCCCcchHHHHHHHHHHcCCEEEEEeCchHHHHHHHHHHHhcC---CceEEEccCCCHHHHHHHHHHHHHH
Confidence 456788888854 3 3556677779999988877543333333322222 2235678887632
Q ss_pred CCCCccccccccc
Q 018261 119 LPYFDICVANIPY 131 (359)
Q Consensus 119 l~~fD~VvsNlPy 131 (359)
+...|++|.|..+
T Consensus 84 ~g~iDilVnnag~ 96 (260)
T PRK06603 84 WGSFDFLLHGMAF 96 (260)
T ss_pred cCCccEEEEcccc
Confidence 2357888887643
No 477
>PLN02896 cinnamyl-alcohol dehydrogenase
Probab=48.68 E-value=77 Score=30.60 Aligned_cols=71 Identities=21% Similarity=0.256 Sum_probs=44.2
Q ss_pred CCCEEEEEcCcccHHHHHHHH----cCCeEEEEeCCHHHHHHHHHHhhcCCCCCCeEEEEccccCCC-----CCCCcccc
Q 018261 56 STDVILEIGPGTGNLTKKLLE----AGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTD-----LPYFDICV 126 (359)
Q Consensus 56 ~~~~VLDIGcGtG~lt~~La~----~~~~V~avDid~~~i~~a~~~~~~~~~~~~v~~i~~D~~~~~-----l~~fD~Vv 126 (359)
.+.+||=.|. +|.++..+++ .+.+|++++.++.-...+...+... .+++++.+|+.+.. +..+|.||
T Consensus 9 ~~~~vLVtG~-~GfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~---~~~~~~~~Dl~~~~~~~~~~~~~d~Vi 84 (353)
T PLN02896 9 ATGTYCVTGA-TGYIGSWLVKLLLQRGYTVHATLRDPAKSLHLLSKWKEG---DRLRLFRADLQEEGSFDEAVKGCDGVF 84 (353)
T ss_pred CCCEEEEECC-CcHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHhhccC---CeEEEEECCCCCHHHHHHHHcCCCEEE
Confidence 4568888884 6766665554 5789999987765433333332221 26889999987642 22467776
Q ss_pred cccc
Q 018261 127 ANIP 130 (359)
Q Consensus 127 sNlP 130 (359)
....
T Consensus 85 h~A~ 88 (353)
T PLN02896 85 HVAA 88 (353)
T ss_pred ECCc
Confidence 6543
No 478
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=48.67 E-value=68 Score=28.26 Aligned_cols=74 Identities=15% Similarity=0.087 Sum_probs=42.5
Q ss_pred CCCEEEEEcC-c-ccH-HHHHHHHcCCeEEEEeCCHHHHHHHHHHhhcCCCCCCeEEEEccccCCC-----CCCCccccc
Q 018261 56 STDVILEIGP-G-TGN-LTKKLLEAGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTD-----LPYFDICVA 127 (359)
Q Consensus 56 ~~~~VLDIGc-G-tG~-lt~~La~~~~~V~avDid~~~i~~a~~~~~~~~~~~~v~~i~~D~~~~~-----l~~fD~Vvs 127 (359)
.+.+++=+|+ | .|. ....|++.+.+|+.+..++.-.+.+.+.+.... ...+...|..+.. +...|+||+
T Consensus 27 ~~~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~~~~~~~l~~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~diVi~ 103 (194)
T cd01078 27 KGKTAVVLGGTGPVGQRAAVLLAREGARVVLVGRDLERAQKAADSLRARF---GEGVGAVETSDDAARAAAIKGADVVFA 103 (194)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhhc---CCcEEEeeCCCHHHHHHHHhcCCEEEE
Confidence 5678888885 3 342 344555567899999888776665555443211 2334444443321 235788887
Q ss_pred ccccc
Q 018261 128 NIPYQ 132 (359)
Q Consensus 128 NlPy~ 132 (359)
..|..
T Consensus 104 at~~g 108 (194)
T cd01078 104 AGAAG 108 (194)
T ss_pred CCCCC
Confidence 66543
No 479
>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional
Probab=48.55 E-value=91 Score=28.28 Aligned_cols=73 Identities=19% Similarity=0.194 Sum_probs=44.1
Q ss_pred CEEEEEcCccc---HHHHHHHHcCCeEEEEeCCHHHHHHHHHHhhcCCCCCCeEEEEccccCCC------------CCCC
Q 018261 58 DVILEIGPGTG---NLTKKLLEAGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTD------------LPYF 122 (359)
Q Consensus 58 ~~VLDIGcGtG---~lt~~La~~~~~V~avDid~~~i~~a~~~~~~~~~~~~v~~i~~D~~~~~------------l~~f 122 (359)
.+||=.|.+.| .++..|++.+.+|+.++.++.....+...+....-..++.++.+|+.+.. +...
T Consensus 3 k~ilItG~~~~IG~~la~~l~~~g~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~~~~i 82 (259)
T PRK12384 3 QVAVVIGGGQTLGAFLCHGLAEEGYRVAVADINSEKAANVAQEINAEYGEGMAYGFGADATSEQSVLALSRGVDEIFGRV 82 (259)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhcCCceeEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence 56788885433 24445556689999999987665554443322110125788899987532 1246
Q ss_pred cccccccc
Q 018261 123 DICVANIP 130 (359)
Q Consensus 123 D~VvsNlP 130 (359)
|.+|.|.-
T Consensus 83 d~vv~~ag 90 (259)
T PRK12384 83 DLLVYNAG 90 (259)
T ss_pred CEEEECCC
Confidence 77777653
No 480
>PRK06484 short chain dehydrogenase; Validated
Probab=48.45 E-value=72 Score=32.60 Aligned_cols=70 Identities=19% Similarity=0.301 Sum_probs=47.7
Q ss_pred CCCEEEEEcCccc---HHHHHHHHcCCeEEEEeCCHHHHHHHHHHhhcCCCCCCeEEEEccccCCC------------CC
Q 018261 56 STDVILEIGPGTG---NLTKKLLEAGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTD------------LP 120 (359)
Q Consensus 56 ~~~~VLDIGcGtG---~lt~~La~~~~~V~avDid~~~i~~a~~~~~~~~~~~~v~~i~~D~~~~~------------l~ 120 (359)
.+..+|=.|.+.| .++..|++.|.+|+.++.++.-++.+.+... .++..+.+|+.+.. +.
T Consensus 268 ~~k~~lItGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~-----~~~~~~~~D~~~~~~~~~~~~~~~~~~g 342 (520)
T PRK06484 268 SPRVVAITGGARGIGRAVADRFAAAGDRLLIIDRDAEGAKKLAEALG-----DEHLSVQADITDEAAVESAFAQIQARWG 342 (520)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhC-----CceeEEEccCCCHHHHHHHHHHHHHHcC
Confidence 3567787887665 3555666778999999998877666655432 25667788887532 13
Q ss_pred CCcccccccc
Q 018261 121 YFDICVANIP 130 (359)
Q Consensus 121 ~fD~VvsNlP 130 (359)
..|++|.|.-
T Consensus 343 ~id~li~nAg 352 (520)
T PRK06484 343 RLDVLVNNAG 352 (520)
T ss_pred CCCEEEECCC
Confidence 4788888754
No 481
>PRK07889 enoyl-(acyl carrier protein) reductase; Provisional
Probab=48.11 E-value=54 Score=30.13 Aligned_cols=71 Identities=20% Similarity=0.280 Sum_probs=44.1
Q ss_pred CCCEEEEEcCc-ccHH----HHHHHHcCCeEEEEeCCH--HHHHHHHHHhhcCCCCCCeEEEEccccCCC----------
Q 018261 56 STDVILEIGPG-TGNL----TKKLLEAGKMVIAVELDS--RMVLELQRRFQSTPYSNRLKVIQGDVLKTD---------- 118 (359)
Q Consensus 56 ~~~~VLDIGcG-tG~l----t~~La~~~~~V~avDid~--~~i~~a~~~~~~~~~~~~v~~i~~D~~~~~---------- 118 (359)
.+.++|=.|.| ++.+ +..|++.|.+|+.++.+. +.++.+.+.+. .++.++..|+.+..
T Consensus 6 ~~k~~lItGa~~s~GIG~a~a~~la~~G~~v~l~~r~~~~~~~~~~~~~~~-----~~~~~~~~Dv~~~~~i~~~~~~~~ 80 (256)
T PRK07889 6 EGKRILVTGVITDSSIAFHVARVAQEQGAEVVLTGFGRALRLTERIAKRLP-----EPAPVLELDVTNEEHLASLADRVR 80 (256)
T ss_pred cCCEEEEeCCCCcchHHHHHHHHHHHCCCEEEEecCccchhHHHHHHHhcC-----CCCcEEeCCCCCHHHHHHHHHHHH
Confidence 45788999983 3444 444555689999988764 44444433322 14667888887642
Q ss_pred --CCCCccccccccc
Q 018261 119 --LPYFDICVANIPY 131 (359)
Q Consensus 119 --l~~fD~VvsNlPy 131 (359)
+..+|++|.|.-+
T Consensus 81 ~~~g~iD~li~nAG~ 95 (256)
T PRK07889 81 EHVDGLDGVVHSIGF 95 (256)
T ss_pred HHcCCCcEEEEcccc
Confidence 2357888887643
No 482
>PRK08415 enoyl-(acyl carrier protein) reductase; Provisional
Probab=47.95 E-value=86 Score=29.27 Aligned_cols=73 Identities=19% Similarity=0.208 Sum_probs=44.8
Q ss_pred CCCEEEEEcCc----cc-HHHHHHHHcCCeEEEEeCCHHHHHHHHHHhhcCCCCCCeEEEEccccCCC------------
Q 018261 56 STDVILEIGPG----TG-NLTKKLLEAGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTD------------ 118 (359)
Q Consensus 56 ~~~~VLDIGcG----tG-~lt~~La~~~~~V~avDid~~~i~~a~~~~~~~~~~~~v~~i~~D~~~~~------------ 118 (359)
.++.+|=.|++ .| .++..|++.|++|+.++.+.+..+.+.+.....+ .. .++.+|+.+..
T Consensus 4 ~~k~~lItGas~~~GIG~aiA~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~--~~-~~~~~Dv~d~~~v~~~~~~i~~~ 80 (274)
T PRK08415 4 KGKKGLIVGVANNKSIAYGIAKACFEQGAELAFTYLNEALKKRVEPIAQELG--SD-YVYELDVSKPEHFKSLAESLKKD 80 (274)
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHHHCCCEEEEEecCHHHHHHHHHHHHhcC--Cc-eEEEecCCCHHHHHHHHHHHHHH
Confidence 35788888874 34 2555666778999999988643333333322222 13 56788887642
Q ss_pred CCCCccccccccc
Q 018261 119 LPYFDICVANIPY 131 (359)
Q Consensus 119 l~~fD~VvsNlPy 131 (359)
+..+|++|.|.-+
T Consensus 81 ~g~iDilVnnAG~ 93 (274)
T PRK08415 81 LGKIDFIVHSVAF 93 (274)
T ss_pred cCCCCEEEECCcc
Confidence 2357888888643
No 483
>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1.3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.
Probab=47.69 E-value=34 Score=32.02 Aligned_cols=60 Identities=15% Similarity=0.146 Sum_probs=33.5
Q ss_pred HHHHHHHcC--CeEEEEeCCHHHHHHHHHHhhcCCCCCCeEEEEccccCCCCCCCcccccccccccchHHH
Q 018261 70 LTKKLLEAG--KMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTDLPYFDICVANIPYQISSPLT 138 (359)
Q Consensus 70 lt~~La~~~--~~V~avDid~~~i~~a~~~~~~~~~~~~v~~i~~D~~~~~l~~fD~VvsNlPy~i~s~ii 138 (359)
+++.|.+.+ .+|+|+|.++..+..|.+. ++ +.-...+.. .+..+|+||...|......++
T Consensus 1 ~A~aL~~~g~~~~v~g~d~~~~~~~~a~~~----g~---~~~~~~~~~--~~~~~DlvvlavP~~~~~~~l 62 (258)
T PF02153_consen 1 IALALRKAGPDVEVYGYDRDPETLEAALEL----GI---IDEASTDIE--AVEDADLVVLAVPVSAIEDVL 62 (258)
T ss_dssp HHHHHHHTTTTSEEEEE-SSHHHHHHHHHT----TS---SSEEESHHH--HGGCCSEEEE-S-HHHHHHHH
T ss_pred ChHHHHhCCCCeEEEEEeCCHHHHHHHHHC----CC---eeeccCCHh--HhcCCCEEEEcCCHHHHHHHH
Confidence 356677776 7999999999998877653 11 111122211 134578888777754443333
No 484
>PRK09291 short chain dehydrogenase; Provisional
Probab=47.64 E-value=93 Score=28.08 Aligned_cols=72 Identities=24% Similarity=0.202 Sum_probs=45.6
Q ss_pred CEEEEEcCcccH---HHHHHHHcCCeEEEEeCCHHHHHHHHHHhhcCCCCCCeEEEEccccCCC-----CC-CCcccccc
Q 018261 58 DVILEIGPGTGN---LTKKLLEAGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTD-----LP-YFDICVAN 128 (359)
Q Consensus 58 ~~VLDIGcGtG~---lt~~La~~~~~V~avDid~~~i~~a~~~~~~~~~~~~v~~i~~D~~~~~-----l~-~fD~VvsN 128 (359)
.+||=.|++.|. ++..|++.|.+|+++..++.-...+.......+ .++.++.+|+.+.. .. ..|.||.|
T Consensus 3 ~~vlVtGasg~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~id~vi~~ 80 (257)
T PRK09291 3 KTILITGAGSGFGREVALRLARKGHNVIAGVQIAPQVTALRAEAARRG--LALRVEKLDLTDAIDRAQAAEWDVDVLLNN 80 (257)
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CcceEEEeeCCCHHHHHHHhcCCCCEEEEC
Confidence 467888875432 334455668999999988766555555443332 25788889987632 11 57888877
Q ss_pred ccc
Q 018261 129 IPY 131 (359)
Q Consensus 129 lPy 131 (359)
.-+
T Consensus 81 ag~ 83 (257)
T PRK09291 81 AGI 83 (257)
T ss_pred CCc
Confidence 543
No 485
>TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase. Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase.
Probab=47.13 E-value=84 Score=28.73 Aligned_cols=69 Identities=20% Similarity=0.356 Sum_probs=45.2
Q ss_pred CCCEEEEEcCccc---HHHHHHHHcCCeEEEEeCCHHHHHHHHHHhhcCCCCCCeEEEEccccCCC------------CC
Q 018261 56 STDVILEIGPGTG---NLTKKLLEAGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTD------------LP 120 (359)
Q Consensus 56 ~~~~VLDIGcGtG---~lt~~La~~~~~V~avDid~~~i~~a~~~~~~~~~~~~v~~i~~D~~~~~------------l~ 120 (359)
.+.++|=.|++.| .++..|++.|.+|+.++.+...++.+.+.. + .++.++.+|+.+.. ++
T Consensus 4 ~~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~l~~~~---~--~~~~~~~~D~~~~~~~~~~~~~~~~~~g 78 (262)
T TIGR03325 4 KGEVVLVTGGASGLGRAIVDRFVAEGARVAVLDKSAAGLQELEAAH---G--DAVVGVEGDVRSLDDHKEAVARCVAAFG 78 (262)
T ss_pred CCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhhc---C--CceEEEEeccCCHHHHHHHHHHHHHHhC
Confidence 3567888887554 245566667899999999877655544321 1 25778888887532 13
Q ss_pred CCccccccc
Q 018261 121 YFDICVANI 129 (359)
Q Consensus 121 ~fD~VvsNl 129 (359)
..|.+|.|.
T Consensus 79 ~id~li~~A 87 (262)
T TIGR03325 79 KIDCLIPNA 87 (262)
T ss_pred CCCEEEECC
Confidence 468888775
No 486
>TIGR01289 LPOR light-dependent protochlorophyllide reductase. This model represents the light-dependent, NADPH-dependent form of protochlorophyllide reductase. It belongs to the short chain alcohol dehydrogenase family, in contrast to the nitrogenase-related light-independent form.
Probab=47.07 E-value=93 Score=29.68 Aligned_cols=73 Identities=18% Similarity=0.153 Sum_probs=47.3
Q ss_pred CCEEEEEcCcccH---HHHHHHHcC-CeEEEEeCCHHHHHHHHHHhhcCCCCCCeEEEEccccCCC------------CC
Q 018261 57 TDVILEIGPGTGN---LTKKLLEAG-KMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTD------------LP 120 (359)
Q Consensus 57 ~~~VLDIGcGtG~---lt~~La~~~-~~V~avDid~~~i~~a~~~~~~~~~~~~v~~i~~D~~~~~------------l~ 120 (359)
+.++|=.|+..|. ++..|++.| .+|+.+..++.-...+.+.+...+ .++.++.+|+.+.. ..
T Consensus 3 ~k~vlITGas~GIG~aia~~L~~~G~~~V~l~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dl~~~~~v~~~~~~~~~~~~ 80 (314)
T TIGR01289 3 KPTVIITGASSGLGLYAAKALAATGEWHVIMACRDFLKAEQAAKSLGMPK--DSYTIMHLDLGSLDSVRQFVQQFRESGR 80 (314)
T ss_pred CCEEEEECCCChHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhcCCC--CeEEEEEcCCCCHHHHHHHHHHHHHhCC
Confidence 3567777876552 455666678 899999888776655555443221 25778888886542 13
Q ss_pred CCccccccccc
Q 018261 121 YFDICVANIPY 131 (359)
Q Consensus 121 ~fD~VvsNlPy 131 (359)
..|++|.|..+
T Consensus 81 ~iD~lI~nAG~ 91 (314)
T TIGR01289 81 PLDALVCNAAV 91 (314)
T ss_pred CCCEEEECCCc
Confidence 47888888643
No 487
>PLN02740 Alcohol dehydrogenase-like
Probab=47.00 E-value=54 Score=32.17 Aligned_cols=47 Identities=17% Similarity=0.276 Sum_probs=33.9
Q ss_pred HHcCCCCCCEEEEEcCcc-cHHHHHHHHc-CC-eEEEEeCCHHHHHHHHH
Q 018261 50 QKAGIKSTDVILEIGPGT-GNLTKKLLEA-GK-MVIAVELDSRMVLELQR 96 (359)
Q Consensus 50 ~~~~~~~~~~VLDIGcGt-G~lt~~La~~-~~-~V~avDid~~~i~~a~~ 96 (359)
....+.++++||=+|+|. |.++..+++. |. +|+++|.++.-++.+++
T Consensus 192 ~~~~~~~g~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~~~~~r~~~a~~ 241 (381)
T PLN02740 192 NTANVQAGSSVAIFGLGAVGLAVAEGARARGASKIIGVDINPEKFEKGKE 241 (381)
T ss_pred hccCCCCCCEEEEECCCHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHH
Confidence 345678899999998752 3344455554 66 69999999988888865
No 488
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=46.74 E-value=72 Score=29.26 Aligned_cols=48 Identities=23% Similarity=0.269 Sum_probs=34.9
Q ss_pred HHcCCCCCCEEEEEcCcc-cHHHHHHHHc-CCe-EEEEeCCHHHHHHHHHH
Q 018261 50 QKAGIKSTDVILEIGPGT-GNLTKKLLEA-GKM-VIAVELDSRMVLELQRR 97 (359)
Q Consensus 50 ~~~~~~~~~~VLDIGcGt-G~lt~~La~~-~~~-V~avDid~~~i~~a~~~ 97 (359)
....+.++.+||=.|||. |..+..+++. +.+ |++++.+++....+++.
T Consensus 91 ~~~~~~~g~~vlI~g~g~vg~~~i~~a~~~g~~~vi~~~~~~~~~~~~~~~ 141 (277)
T cd08255 91 RDAEPRLGERVAVVGLGLVGLLAAQLAKAAGAREVVGVDPDAARRELAEAL 141 (277)
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEECCCHHHHHHHHHc
Confidence 345677888998888765 5566666655 667 99999998887766653
No 489
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=46.70 E-value=76 Score=32.02 Aligned_cols=85 Identities=13% Similarity=0.078 Sum_probs=46.3
Q ss_pred CCCCEEEEEcCc-ccH-HHHHHHHcCCeEEEEeCCHHHHHHHHHHhhcCCCCCCeEEEEccccCCCCCCCcccccccccc
Q 018261 55 KSTDVILEIGPG-TGN-LTKKLLEAGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTDLPYFDICVANIPYQ 132 (359)
Q Consensus 55 ~~~~~VLDIGcG-tG~-lt~~La~~~~~V~avDid~~~i~~a~~~~~~~~~~~~v~~i~~D~~~~~l~~fD~VvsNlPy~ 132 (359)
+.+..|+=+|.| +|. ++..|.+.|.+|++.|..+.. ... ..+.... ..+.+..+....-.+..+|+||.++-..
T Consensus 4 ~~~~~~~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~~~-~~~-~~l~~~~--~g~~~~~~~~~~~~~~~~d~vV~sp~i~ 79 (448)
T PRK03803 4 QSDGLHIVVGLGKTGLSVVRFLARQGIPFAVMDSREQP-PGL-DTLAREF--PDVELRCGGFDCELLVQASEIIISPGLA 79 (448)
T ss_pred ccCCeEEEEeecHhHHHHHHHHHhCCCeEEEEeCCCCc-hhH-HHHHhhc--CCcEEEeCCCChHHhcCCCEEEECCCCC
Confidence 345677878876 443 444555669999999986532 111 1122110 0355655422211234578888777655
Q ss_pred cchHHHHHHHh
Q 018261 133 ISSPLTFKLLF 143 (359)
Q Consensus 133 i~s~ii~~ll~ 143 (359)
...|.+....+
T Consensus 80 ~~~p~~~~a~~ 90 (448)
T PRK03803 80 LDTPALRAAAA 90 (448)
T ss_pred CCCHHHHHHHH
Confidence 56665554443
No 490
>PLN02166 dTDP-glucose 4,6-dehydratase
Probab=46.63 E-value=61 Score=32.85 Aligned_cols=67 Identities=22% Similarity=0.237 Sum_probs=40.6
Q ss_pred CCCEEEEEcCcccHHHHHHHH----cCCeEEEEeCCHHH-HHHHHHHhhcCCCCCCeEEEEccccCCCCCCCccccc
Q 018261 56 STDVILEIGPGTGNLTKKLLE----AGKMVIAVELDSRM-VLELQRRFQSTPYSNRLKVIQGDVLKTDLPYFDICVA 127 (359)
Q Consensus 56 ~~~~VLDIGcGtG~lt~~La~----~~~~V~avDid~~~-i~~a~~~~~~~~~~~~v~~i~~D~~~~~l~~fD~Vvs 127 (359)
++.+||=.| |+|.++..|++ .+.+|+++|..... ...... .... .+++++.+|+.+..+..+|+||.
T Consensus 119 ~~mkILVTG-atGFIGs~Lv~~Ll~~G~~V~~ldr~~~~~~~~~~~-~~~~---~~~~~~~~Di~~~~~~~~D~ViH 190 (436)
T PLN02166 119 KRLRIVVTG-GAGFVGSHLVDKLIGRGDEVIVIDNFFTGRKENLVH-LFGN---PRFELIRHDVVEPILLEVDQIYH 190 (436)
T ss_pred CCCEEEEEC-CccHHHHHHHHHHHHCCCEEEEEeCCCCccHhHhhh-hccC---CceEEEECccccccccCCCEEEE
Confidence 346788777 58887776655 47899999964221 111111 1111 26788999987654446786654
No 491
>PRK07074 short chain dehydrogenase; Provisional
Probab=46.45 E-value=1e+02 Score=27.89 Aligned_cols=69 Identities=23% Similarity=0.372 Sum_probs=44.9
Q ss_pred CEEEEEcCccc---HHHHHHHHcCCeEEEEeCCHHHHHHHHHHhhcCCCCCCeEEEEccccCCC------------CCCC
Q 018261 58 DVILEIGPGTG---NLTKKLLEAGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTD------------LPYF 122 (359)
Q Consensus 58 ~~VLDIGcGtG---~lt~~La~~~~~V~avDid~~~i~~a~~~~~~~~~~~~v~~i~~D~~~~~------------l~~f 122 (359)
.++|=.|++.| .++..|++.+.+|++++.++.-.+.+.+.+.. .++.++.+|+.+.. ++.+
T Consensus 3 k~ilItGat~~iG~~la~~L~~~g~~v~~~~r~~~~~~~~~~~~~~----~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~ 78 (257)
T PRK07074 3 RTALVTGAAGGIGQALARRFLAAGDRVLALDIDAAALAAFADALGD----ARFVPVACDLTDAASLAAALANAAAERGPV 78 (257)
T ss_pred CEEEEECCcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcC----CceEEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence 46777787554 24445566688999999988766555444421 26788899987642 1236
Q ss_pred cccccccc
Q 018261 123 DICVANIP 130 (359)
Q Consensus 123 D~VvsNlP 130 (359)
|.||.+.-
T Consensus 79 d~vi~~ag 86 (257)
T PRK07074 79 DVLVANAG 86 (257)
T ss_pred CEEEECCC
Confidence 88777763
No 492
>TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family. This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants.
Probab=46.26 E-value=1.9e+02 Score=27.18 Aligned_cols=73 Identities=10% Similarity=0.086 Sum_probs=41.5
Q ss_pred HHHHHHHHHHcCCCCCCEEEEEcCcccHHHHHHHHcCCeEEEEeCCHH-HHHHHHHHhhcCC--CCCCeEEEEcccc
Q 018261 42 PLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEAGKMVIAVELDSR-MVLELQRRFQSTP--YSNRLKVIQGDVL 115 (359)
Q Consensus 42 ~~v~~~iv~~~~~~~~~~VLDIGcGtG~lt~~La~~~~~V~avDid~~-~i~~a~~~~~~~~--~~~~v~~i~~D~~ 115 (359)
..+++..+..+--.....|+.+|||.=.....|... ..+.-+|+|-. .++.=++.+...+ ...+.+++.+|+.
T Consensus 67 tr~~D~~i~~~~~~g~~qvV~LGaGlDTr~~Rl~~~-~~~~~~EvD~P~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~ 142 (260)
T TIGR00027 67 TRFFDDFLLAAVAAGIRQVVILGAGLDTRAYRLPWP-DGTRVFEVDQPAVLAFKEKVLAELGAEPPAHRRAVPVDLR 142 (260)
T ss_pred HHHHHHHHHHHHhcCCcEEEEeCCccccHHHhcCCC-CCCeEEECCChHHHHHHHHHHHHcCCCCCCceEEeccCch
Confidence 334444444432223457999999987766666422 23555666644 4444444454321 1247889999986
No 493
>PRK08159 enoyl-(acyl carrier protein) reductase; Provisional
Probab=46.13 E-value=54 Score=30.53 Aligned_cols=73 Identities=14% Similarity=0.077 Sum_probs=43.6
Q ss_pred CCCEEEEEcCc----cc-HHHHHHHHcCCeEEEEeCCHHHHHHHHHHhhcCCCCCCeEEEEccccCCC------------
Q 018261 56 STDVILEIGPG----TG-NLTKKLLEAGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTD------------ 118 (359)
Q Consensus 56 ~~~~VLDIGcG----tG-~lt~~La~~~~~V~avDid~~~i~~a~~~~~~~~~~~~v~~i~~D~~~~~------------ 118 (359)
.+.++|=.|.+ .| .++..|++.|++|+.+..+....+.+.+.....+ ...++.+|+.+..
T Consensus 9 ~~k~~lItGas~~~GIG~aia~~la~~G~~V~l~~r~~~~~~~~~~l~~~~~---~~~~~~~Dl~~~~~v~~~~~~~~~~ 85 (272)
T PRK08159 9 AGKRGLILGVANNRSIAWGIAKACRAAGAELAFTYQGDALKKRVEPLAAELG---AFVAGHCDVTDEASIDAVFETLEKK 85 (272)
T ss_pred cCCEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEcCchHHHHHHHHHHHhcC---CceEEecCCCCHHHHHHHHHHHHHh
Confidence 45788888974 33 2455666678999888665433333333322222 3456788886532
Q ss_pred CCCCccccccccc
Q 018261 119 LPYFDICVANIPY 131 (359)
Q Consensus 119 l~~fD~VvsNlPy 131 (359)
++..|++|.|.-+
T Consensus 86 ~g~iD~lv~nAG~ 98 (272)
T PRK08159 86 WGKLDFVVHAIGF 98 (272)
T ss_pred cCCCcEEEECCcc
Confidence 2357888888643
No 494
>PRK06997 enoyl-(acyl carrier protein) reductase; Provisional
Probab=46.00 E-value=70 Score=29.47 Aligned_cols=72 Identities=17% Similarity=0.075 Sum_probs=41.4
Q ss_pred CCCEEEEEcC-cccH----HHHHHHHcCCeEEEEeCCHHHHHHHHHHhhcCCCCCCeEEEEccccCCC------------
Q 018261 56 STDVILEIGP-GTGN----LTKKLLEAGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTD------------ 118 (359)
Q Consensus 56 ~~~~VLDIGc-GtG~----lt~~La~~~~~V~avDid~~~i~~a~~~~~~~~~~~~v~~i~~D~~~~~------------ 118 (359)
.+.++|=.|. |++. ++..|++.|.+|+.++...+..+.+.+.....+ ...++.+|+.+.+
T Consensus 5 ~~k~vlItGas~~~GIG~a~a~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~---~~~~~~~Dv~d~~~v~~~~~~~~~~ 81 (260)
T PRK06997 5 AGKRILITGLLSNRSIAYGIAKACKREGAELAFTYVGDRFKDRITEFAAEFG---SDLVFPCDVASDEQIDALFASLGQH 81 (260)
T ss_pred CCcEEEEeCCCCCCcHHHHHHHHHHHCCCeEEEEccchHHHHHHHHHHHhcC---CcceeeccCCCHHHHHHHHHHHHHH
Confidence 4578888886 3433 455566678999887654332233332222222 2345778887542
Q ss_pred CCCCcccccccc
Q 018261 119 LPYFDICVANIP 130 (359)
Q Consensus 119 l~~fD~VvsNlP 130 (359)
+..+|++|.|.-
T Consensus 82 ~g~iD~lvnnAG 93 (260)
T PRK06997 82 WDGLDGLVHSIG 93 (260)
T ss_pred hCCCcEEEEccc
Confidence 235788888864
No 495
>PRK05993 short chain dehydrogenase; Provisional
Probab=45.95 E-value=86 Score=29.07 Aligned_cols=67 Identities=24% Similarity=0.212 Sum_probs=43.8
Q ss_pred CCEEEEEcCccc---HHHHHHHHcCCeEEEEeCCHHHHHHHHHHhhcCCCCCCeEEEEccccCCC------------C-C
Q 018261 57 TDVILEIGPGTG---NLTKKLLEAGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTD------------L-P 120 (359)
Q Consensus 57 ~~~VLDIGcGtG---~lt~~La~~~~~V~avDid~~~i~~a~~~~~~~~~~~~v~~i~~D~~~~~------------l-~ 120 (359)
+.+||=.|++.| .++..|++.|.+|++++.++..+..+.. . .+.++.+|+.+.. . .
T Consensus 4 ~k~vlItGasggiG~~la~~l~~~G~~Vi~~~r~~~~~~~l~~----~----~~~~~~~Dl~d~~~~~~~~~~~~~~~~g 75 (277)
T PRK05993 4 KRSILITGCSSGIGAYCARALQSDGWRVFATCRKEEDVAALEA----E----GLEAFQLDYAEPESIAALVAQVLELSGG 75 (277)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH----C----CceEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 457888887543 2444555668999999998876654432 1 4677888887532 0 2
Q ss_pred CCccccccccc
Q 018261 121 YFDICVANIPY 131 (359)
Q Consensus 121 ~fD~VvsNlPy 131 (359)
..|++|.|.-+
T Consensus 76 ~id~li~~Ag~ 86 (277)
T PRK05993 76 RLDALFNNGAY 86 (277)
T ss_pred CccEEEECCCc
Confidence 46888887543
No 496
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=45.58 E-value=1e+02 Score=29.33 Aligned_cols=66 Identities=12% Similarity=0.211 Sum_probs=38.1
Q ss_pred CEEEEEcCcc--cHHHHHHHHcC--CeEEEEeCCHHHHHHHHHHhhcCCCCCCeEEEEccccCCCCCCCccccccccc
Q 018261 58 DVILEIGPGT--GNLTKKLLEAG--KMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTDLPYFDICVANIPY 131 (359)
Q Consensus 58 ~~VLDIGcGt--G~lt~~La~~~--~~V~avDid~~~i~~a~~~~~~~~~~~~v~~i~~D~~~~~l~~fD~VvsNlPy 131 (359)
.+|.=||+|. +.+...|.+.+ .+|+++|.++..++.+++. +. ... ...+..+ .+...|+||...|.
T Consensus 7 ~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~~----g~--~~~-~~~~~~~-~~~~aDvViiavp~ 76 (307)
T PRK07502 7 DRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARAREL----GL--GDR-VTTSAAE-AVKGADLVILCVPV 76 (307)
T ss_pred cEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHhC----CC--Cce-ecCCHHH-HhcCCCEEEECCCH
Confidence 4688888876 23445555555 4899999999877666542 21 011 1122211 12357888877664
No 497
>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional
Probab=45.56 E-value=85 Score=28.85 Aligned_cols=71 Identities=14% Similarity=0.189 Sum_probs=43.4
Q ss_pred CCCEEEEEcCc----cc-HHHHHHHHcCCeEEEEeCCH---HHHHHHHHHhhcCCCCCCeEEEEccccCCC---------
Q 018261 56 STDVILEIGPG----TG-NLTKKLLEAGKMVIAVELDS---RMVLELQRRFQSTPYSNRLKVIQGDVLKTD--------- 118 (359)
Q Consensus 56 ~~~~VLDIGcG----tG-~lt~~La~~~~~V~avDid~---~~i~~a~~~~~~~~~~~~v~~i~~D~~~~~--------- 118 (359)
.+.++|=.|.+ .| .++..|++.|++|+.++.+. ..++.+.+.+. + .++.++..|+.+..
T Consensus 6 ~~k~~lItGa~~s~GIG~aia~~la~~G~~v~~~~r~~~~~~~~~~~~~~~~--~--~~~~~~~~Dv~d~~~v~~~~~~~ 81 (257)
T PRK08594 6 EGKTYVVMGVANKRSIAWGIARSLHNAGAKLVFTYAGERLEKEVRELADTLE--G--QESLLLPCDVTSDEEITACFETI 81 (257)
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEecCcccchHHHHHHHHHcC--C--CceEEEecCCCCHHHHHHHHHHH
Confidence 45788989975 33 24555666789999886543 23333333222 1 26778889987642
Q ss_pred ---CCCCcccccccc
Q 018261 119 ---LPYFDICVANIP 130 (359)
Q Consensus 119 ---l~~fD~VvsNlP 130 (359)
+..+|++|.|.-
T Consensus 82 ~~~~g~ld~lv~nag 96 (257)
T PRK08594 82 KEEVGVIHGVAHCIA 96 (257)
T ss_pred HHhCCCccEEEECcc
Confidence 235788887754
No 498
>PRK05599 hypothetical protein; Provisional
Probab=45.55 E-value=97 Score=28.15 Aligned_cols=71 Identities=15% Similarity=0.160 Sum_probs=45.3
Q ss_pred EEEEEcCcccH---HHHHHHHcCCeEEEEeCCHHHHHHHHHHhhcCCCCCCeEEEEccccCCC------------CCCCc
Q 018261 59 VILEIGPGTGN---LTKKLLEAGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTD------------LPYFD 123 (359)
Q Consensus 59 ~VLDIGcGtG~---lt~~La~~~~~V~avDid~~~i~~a~~~~~~~~~~~~v~~i~~D~~~~~------------l~~fD 123 (359)
++|=.|++.|. ++..|+ .+.+|+.+..++.-++.+.+.+...+. .++.++.+|+.+.. .+..|
T Consensus 2 ~vlItGas~GIG~aia~~l~-~g~~Vil~~r~~~~~~~~~~~l~~~~~-~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~id 79 (246)
T PRK05599 2 SILILGGTSDIAGEIATLLC-HGEDVVLAARRPEAAQGLASDLRQRGA-TSVHVLSFDAQDLDTHRELVKQTQELAGEIS 79 (246)
T ss_pred eEEEEeCccHHHHHHHHHHh-CCCEEEEEeCCHHHHHHHHHHHHhccC-CceEEEEcccCCHHHHHHHHHHHHHhcCCCC
Confidence 46667776652 444455 388999999888777766665544321 24778888887642 13468
Q ss_pred cccccccc
Q 018261 124 ICVANIPY 131 (359)
Q Consensus 124 ~VvsNlPy 131 (359)
++|.|.-+
T Consensus 80 ~lv~nag~ 87 (246)
T PRK05599 80 LAVVAFGI 87 (246)
T ss_pred EEEEecCc
Confidence 88877543
No 499
>PRK07060 short chain dehydrogenase; Provisional
Probab=45.13 E-value=1.1e+02 Score=27.43 Aligned_cols=70 Identities=20% Similarity=0.162 Sum_probs=43.1
Q ss_pred CCCEEEEEcCcc--cH-HHHHHHHcCCeEEEEeCCHHHHHHHHHHhhcCCCCCCeEEEEccccCCC--------CCCCcc
Q 018261 56 STDVILEIGPGT--GN-LTKKLLEAGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTD--------LPYFDI 124 (359)
Q Consensus 56 ~~~~VLDIGcGt--G~-lt~~La~~~~~V~avDid~~~i~~a~~~~~~~~~~~~v~~i~~D~~~~~--------l~~fD~ 124 (359)
.+.++|=.|.+. |. +...|++.+.+|+.++.+++.++...+.. ++.++.+|+.+.. .+.+|+
T Consensus 8 ~~~~~lItGa~g~iG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~-------~~~~~~~D~~~~~~v~~~~~~~~~~d~ 80 (245)
T PRK07060 8 SGKSVLVTGASSGIGRACAVALAQRGARVVAAARNAAALDRLAGET-------GCEPLRLDVGDDAAIRAALAAAGAFDG 80 (245)
T ss_pred CCCEEEEeCCcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh-------CCeEEEecCCCHHHHHHHHHHhCCCCE
Confidence 456788777643 22 33344555889999999887655443322 3456778876532 124788
Q ss_pred cccccccc
Q 018261 125 CVANIPYQ 132 (359)
Q Consensus 125 VvsNlPy~ 132 (359)
||.|..+.
T Consensus 81 vi~~ag~~ 88 (245)
T PRK07060 81 LVNCAGIA 88 (245)
T ss_pred EEECCCCC
Confidence 88877554
No 500
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=44.89 E-value=1.2e+02 Score=27.20 Aligned_cols=72 Identities=18% Similarity=0.212 Sum_probs=47.2
Q ss_pred CCEEEEEcCcccHHHHHHHH----cCCeEEEEeCCHHHHHHHHHHhhcCCCCCCeEEEEccccCCC------------CC
Q 018261 57 TDVILEIGPGTGNLTKKLLE----AGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTD------------LP 120 (359)
Q Consensus 57 ~~~VLDIGcGtG~lt~~La~----~~~~V~avDid~~~i~~a~~~~~~~~~~~~v~~i~~D~~~~~------------l~ 120 (359)
+.+||=.|. +|.++..+++ .+.+|++++.++.....+...+...+ .++.++.+|+.+.. .+
T Consensus 4 ~~~vlItG~-sg~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 80 (258)
T PRK12429 4 GKVALVTGA-ASGIGLEIALALAKEGAKVVIADLNDEAAAAAAEALQKAG--GKAIGVAMDVTDEEAINAGIDYAVETFG 80 (258)
T ss_pred CCEEEEECC-CchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 457776665 5555655544 58899999999877666555444332 36888999987532 12
Q ss_pred CCccccccccc
Q 018261 121 YFDICVANIPY 131 (359)
Q Consensus 121 ~fD~VvsNlPy 131 (359)
..|+||.|..+
T Consensus 81 ~~d~vi~~a~~ 91 (258)
T PRK12429 81 GVDILVNNAGI 91 (258)
T ss_pred CCCEEEECCCC
Confidence 46888877644
Done!