RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 018261
(359 letters)
>1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics,
structural genomics consortium; HET: SAM; 1.90A {Homo
sapiens} SCOP: c.66.1.24
Length = 285
Score = 403 bits (1038), Expect = e-142
Identities = 171/329 (51%), Positives = 215/329 (65%), Gaps = 46/329 (13%)
Query: 31 HKSKGQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEAGKMVIAVELDSRM 90
+ GQHILKNPL++ SI+ KA ++ TDV+LE+GPGTGN+T KLLE K V+A ELD R+
Sbjct: 3 NTGIGQHILKNPLIINSIIDKAALRPTDVVLEVGPGTGNMTVKLLEKAKKVVACELDPRL 62
Query: 91 VLELQRRFQSTPYSNRLKVIQGDVLKTDLPYFDICVANIPYQISSPLTFKLLFHQPAFRC 150
V EL +R Q TP +++L+V+ GDVLKTDLP+FD CVAN+PYQISSP FKLL H+P FRC
Sbjct: 63 VAELHKRVQGTPVASKLQVLVGDVLKTDLPFFDTCVANLPYQISSPFVFKLLLHRPFFRC 122
Query: 151 AIIMFQKEFAMRLVAQPGDKLYCRLSVNTQLHARVSHLLKVGKNNFRPPPKVDSSVVRIE 210
AI+MFQ+EFA+RLVA+PGDKLYCRLS+NTQL ARV HL+KVGKNNFRPPPKV+SSVVRIE
Sbjct: 123 AILMFQREFALRLVAKPGDKLYCRLSINTQLLARVDHLMKVGKNNFRPPPKVESSVVRIE 182
Query: 211 PRKPRPQVNPVEWDGFLRICFIRKNKTLSSIFRLKNVLSMLEKNYRTLQALQSSQNSSLG 270
P+ P P +N EWDG +RI F+RKNKTLS+ F+ V +LEKNYR ++
Sbjct: 183 PKNPPPPINFQEWDGLVRITFVRKNKTLSAAFKSSAVQQLLEKNYRIHCSV--------- 233
Query: 271 NTEIGTDTPSLGDSNGDQSMGVDDGSDDEMDVEDDDGDSDVEGEVSEFKDKVLAVLREGQ 330
+ + E DK+ +L
Sbjct: 234 -------------------------------------HNIIIPEDFSIADKIQQILTSTG 256
Query: 331 FEEKRASKLTQQEFLYLLSLFNKAGIHFS 359
F +KRA + +F+ LL FN GIHFS
Sbjct: 257 FSDKRARSMDIDDFIRLLHGFNAEGIHFS 285
>2h1r_A Dimethyladenosine transferase, putative; SGC toronto
dimethyladenosine transferase, structural genomics,
structural genomics consortium; 1.89A {Plasmodium
falciparum}
Length = 299
Score = 402 bits (1035), Expect = e-141
Identities = 138/338 (40%), Positives = 190/338 (56%), Gaps = 48/338 (14%)
Query: 21 QGLGAGGISFHKSKGQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEAGKM 80
+ G +GQH+LKNP +++ I+ A IKS+D++LEIG GTGNLT KLL K
Sbjct: 7 HHHHSSGRENLYFQGQHLLKNPGILDKIIYAAKIKSSDIVLEIGCGTGNLTVKLLPLAKK 66
Query: 81 VIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTDLPYFDICVANIPYQISSPLTFK 140
VI +++DSRM+ E+++R Y+N L+V +GD +KT P FD+C ANIPY+ISSPL FK
Sbjct: 67 VITIDIDSRMISEVKKRCLYEGYNN-LEVYEGDAIKTVFPKFDVCTANIPYKISSPLIFK 125
Query: 141 LLFHQPAFRCAIIMFQKEFAMRLVAQPGDKLYCRLSVNTQLHARVSHLLKVGKNNFRPPP 200
L+ H+P F+CA++MFQKEFA R++A GD Y RL++N +L +V+ + V +++F PPP
Sbjct: 126 LISHRPLFKCAVLMFQKEFAERMLANVGDSNYSRLTINVKLFCKVTKVCNVNRSSFNPPP 185
Query: 201 KVDSSVVRIEPRKPRPQVNPVEWDGFLRICFIRKNKTLSSIFRLKNVLSMLEKNYRTLQA 260
KVDS +V++ P++ N EWD LRICF RK KTL +IF+ VL+MLE NY+
Sbjct: 186 KVDSVIVKLIPKESSFLTNFDEWDNLLRICFSRKRKTLHAIFKRNAVLNMLEHNYKNWCT 245
Query: 261 LQSSQNSSLGNTEIGTDTPSLGDSNGDQSMGVDDGSDDEMDVEDDDGDSDVEGEVSEFKD 320
L + FK
Sbjct: 246 LNKQVPVNF-----------------------------------------------PFKK 258
Query: 321 KVLAVLREGQFEEKRASKLTQQEFLYLLSLFNKAGIHF 358
L VL EKR+ L + +FL LL FNK GIHF
Sbjct: 259 YCLDVLEHLDMCEKRSINLDENDFLKLLLEFNKKGIHF 296
>3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem
adenosyl-L-methionine, rRNA, methyltransferase,
RNA-binding processing; HET: AMP; 1.60A
{Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A*
3gry_A* 3fyd_A 3fyc_A*
Length = 295
Score = 286 bits (733), Expect = 8e-96
Identities = 88/238 (36%), Positives = 129/238 (54%), Gaps = 10/238 (4%)
Query: 27 GISFHKSKGQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEAGKMVIAVEL 86
K GQ L + V V+ A + DV+LEIG G G LT++L + K V +E+
Sbjct: 21 MFKPKKKLGQCFLIDKNFVNKAVESANLTKDDVVLEIGLGKGILTEELAKNAKKVYVIEI 80
Query: 87 DSRMVLELQRRFQSTPYSNRLKVIQGDVLKTDLPYF--DICVANIPYQISSPLTFKLLFH 144
D + + + Y+N +++I GD LK DL + VAN+PYQISSP+TFKL+
Sbjct: 81 DKSLEPYANKLKE--LYNN-IEIIWGDALKVDLNKLDFNKVVANLPYQISSPITFKLI-- 135
Query: 145 QPAFRCAIIMFQKEFAMRLVAQPGDKLYCRLSVNTQLHARVSHLLKVGKNNFRPPPKVDS 204
+ F A++M+Q EFA R+VA G K Y RLSV Q A V + KV + F P PKV S
Sbjct: 136 KRGFDLAVLMYQYEFAKRMVAAAGTKDYGRLSVAVQSRADVEIVAKVPPSAFYPKPKVYS 195
Query: 205 SVVRIEPRKPRPQV-NPVEWDGFLRICFIRKNKTLSSIFRLKNVLSMLEKNYRTLQAL 261
++V+I+P K + + N +D FLR F +NK++ L + L N ++ +
Sbjct: 196 AIVKIKPNKGKYHIENENFFDDFLRAIFQHRNKSVRKA--LIDSSKELNYNKDEMKKI 251
>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis;
1.98A {Coxiella burnetii}
Length = 255
Score = 222 bits (568), Expect = 2e-71
Identities = 67/219 (30%), Positives = 99/219 (45%), Gaps = 12/219 (5%)
Query: 28 ISFHKSKGQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEAGKMVIAVELD 87
+ K GQH L + +++ IV + TD ++EIGPG G LT LL + VE+D
Sbjct: 1 MPMRKRFGQHFLHDSFVLQKIVSAIHPQKTDTLVEIGPGRGALTDYLLTECDNLALVEID 60
Query: 88 SRMVLELQRRFQSTPYSNRLKVIQGDVLKTDLPYFDIC-----VANIPYQISSPLTFKLL 142
+V LQ+++ + + Q D L+ D V N+PY IS+PL F L
Sbjct: 61 RDLVAFLQKKY---NQQKNITIYQNDALQFDFSSVKTDKPLRVVGNLPYNISTPLLFHLF 117
Query: 143 FHQPAFRCAIIMFQKEFAMRLVAQPGDKLYCRLSVNTQLHARVSHLLKVGKNNFRPPPKV 202
M QKE R+ A+ G Y RLSV Q ++L V F PPP+V
Sbjct: 118 SQIHCIEDMHFMLQKEVVRRITAEVGSHDYGRLSVMAQYFCDNTYLFTVSPQAFTPPPRV 177
Query: 203 DSSVVRIEPRKPRPQVNPVEWDGFLRI---CFIRKNKTL 238
+S+++R+ PR D + F + KT+
Sbjct: 178 ESAIIRLIPRHNFT-PVAKNLDQLSHVVKEAFSYRRKTV 215
>1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor
analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB:
1qan_A* 1qao_A* 1qaq_A* 2erc_A
Length = 244
Score = 219 bits (560), Expect = 2e-70
Identities = 50/226 (22%), Positives = 100/226 (44%), Gaps = 12/226 (5%)
Query: 32 KSKGQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEAGKMVIAVELDSRMV 91
Q+ + + ++ I+ + D I EIG G G+ T +L++ V A+E+D ++
Sbjct: 6 IKHSQNFITSKHNIDKIMTNIRLNEHDNIFEIGSGKGHFTLELVQRCNFVTAIEIDHKLC 65
Query: 92 LELQRRFQSTPYSNRLKVIQGDVLKTDLPYFD--ICVANIPYQISSPLTFKLLFHQPAFR 149
+ + + N +V+ D+L+ P NIPY IS+ + K++F
Sbjct: 66 KTTENKLV--DHDN-FQVLNKDILQFKFPKNQSYKIFGNIPYNISTDIIRKIVFDSI-AD 121
Query: 150 CAIIMFQKEFAMRLVAQPGDKLYCRLSVNTQLHARVSHLLKVGKNNFRPPPKVDSSVVRI 209
++ + FA RL+ L++ +S L V + F P PKV+SS++R+
Sbjct: 122 EIYLIVEYGFAKRLLNTKR-----SLALFLMAEVDISILSMVPREYFHPKPKVNSSLIRL 176
Query: 210 EPRKPRPQV-NPVEWDGFLRICFIRKNKTLSSIFRLKNVLSMLEKN 254
+K R + +++ F+ ++ K + + + N L +
Sbjct: 177 NRKKSRISHKDKQKYNYFVMKWVNKEYKKIFTKNQFNNSLKHAGID 222
>1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus
pneumoniae} SCOP: c.66.1.24
Length = 245
Score = 218 bits (557), Expect = 5e-70
Identities = 49/230 (21%), Positives = 99/230 (43%), Gaps = 12/230 (5%)
Query: 28 ISFHKSKGQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEAGKMVIAVELD 87
++ + Q+ L + ++ I+++ +K TD + EIG G G+LT KL + K V ++ELD
Sbjct: 1 MNKNIKYSQNFLTSEKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKISKQVTSIELD 60
Query: 88 SRMVLELQRRFQSTPYSNRLKVIQGDVLKTDLPYFD--ICVANIPYQISSPLTFKLLFHQ 145
S + + + + + +I D+L+ P V NIPY +S+ + K++F
Sbjct: 61 SHLFNLSSEKLK--LNTR-VTLIHQDILQFQFPNKQRYKIVGNIPYHLSTQIIKKVVFES 117
Query: 146 PAFRCAIIMFQKEFAMRLVAQPGDKLYCRLSVNTQLHARVSHLLKVGKNNFRPPPKVDSS 205
++ ++ F R + L + + LLK+ F P PKV+S
Sbjct: 118 R-ASDIYLIVEEGFYKRTLDIHR-----TLGLLLHTQVSIQQLLKLPAECFHPKPKVNSV 171
Query: 206 VVRIEPRKPRPQVNPVEW-DGFLRICFIRKNKTLSSIFRLKNVLSMLEKN 254
++++ + F+ R+ + L + + + + N
Sbjct: 172 LIKLTRHTTDVPDKYWKLYTYFVSKWVNREYRQLFTKNQFHQAMKHAKVN 221
>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle
structural genomics center for infectio disease; 1.75A
{Burkholderia pseudomallei}
Length = 279
Score = 218 bits (558), Expect = 1e-69
Identities = 72/227 (31%), Positives = 110/227 (48%), Gaps = 21/227 (9%)
Query: 27 GISFHKSKGQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLE----AGKMVI 82
G K GQ+ L + ++++IV + + ++EIGPG G LT ++ G +
Sbjct: 13 GHFARKRFGQNFLVDHGVIDAIVAAIRPERGERMVEIGPGLGALTGPVIARLATPGSPLH 72
Query: 83 AVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTDLPYFDIC--------VANIPYQIS 134
AVELD ++ L++RF L++ GD L D + N+PY IS
Sbjct: 73 AVELDRDLIGRLEQRF-----GELLELHAGDALTFDFGSIARPGDEPSLRIIGNLPYNIS 127
Query: 135 SPLTFKLLFHQPAFRCAIIMFQKEFAMRLVAQPGDKLYCRLSVNTQLHARVSHLLKVGKN 194
SPL F L+ P M Q E R+VA+PG K + RLSV Q + L+ V
Sbjct: 128 SPLLFHLMSFAPVVIDQHFMLQNEVVERMVAEPGTKAFSRLSVMLQYRYVMDKLIDVPPE 187
Query: 195 NFRPPPKVDSSVVRIEPRKPRPQVNPVEWDGFLRI---CFIRKNKTL 238
+F+PPPKVDS++VR+ P P ++ V+ + F ++ K L
Sbjct: 188 SFQPPPKVDSAIVRMIPHAP-HELPAVDPAVLGEVVTAAFSQRRKML 233
>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet;
adenosine dimethyltransferase, rRNA modification,
transferase, translation; 2.10A {Escherichia coli} SCOP:
c.66.1.24 PDB: 4adv_V 3tpz_A
Length = 252
Score = 217 bits (554), Expect = 2e-69
Identities = 68/215 (31%), Positives = 100/215 (46%), Gaps = 18/215 (8%)
Query: 36 QHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEAGKMVIAVELDSRMVLELQ 95
Q+ L + +++SIV + ++EIGPG LT+ + E + +ELD + LQ
Sbjct: 1 QNFLNDQFVIDSIVSAINPQKGQAMVEIGPGLAALTEPVGERLDQLTVIELDRDLAARLQ 60
Query: 96 RRFQSTPYSNRLKVIQGDVLKTDLPYFDIC---------VANIPYQISSPLTFKLLFHQP 146
+L + Q D + + ++ N+PY IS+PL F L +
Sbjct: 61 THPF---LGPKLTIYQQDAMTFNFG--ELAEKMGQPLRVFGNLPYNISTPLMFHLFSYTD 115
Query: 147 AFRCAIIMFQKEFAMRLVAQPGDKLYCRLSVNTQLHARVSHLLKVGKNNFRPPPKVDSSV 206
A M QKE RLVA P K Y RLSV Q + V +L+V + F PPPKVDS+V
Sbjct: 116 AIADMHFMLQKEVVNRLVAGPNSKAYGRLSVMAQYYCNVIPVLEVPPSAFTPPPKVDSAV 175
Query: 207 VRIEPRKPRPQVNPVEWDGFLRI---CFIRKNKTL 238
VR+ P P + RI F ++ KT+
Sbjct: 176 VRLVPHATMP-HPVKDVRVLSRITTEAFNQRRKTI 209
>3fut_A Dimethyladenosine transferase; methyltransferase,
dimethyltransferase, dual-specific methyltransferase,
16S rRNA methyltransferase; 1.52A {Thermus thermophilus}
PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*
Length = 271
Score = 209 bits (534), Expect = 3e-66
Identities = 72/240 (30%), Positives = 109/240 (45%), Gaps = 18/240 (7%)
Query: 27 GISFHKSKGQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEAGKMVIAVEL 86
G+ K GQ+ L + + IV+ A + V E+GPG G LT+ LLEAG V A+E
Sbjct: 18 GLFADKRFGQNFLVSEAHLRRIVEAARPFTGPVF-EVGPGLGALTRALLEAGAEVTAIEK 76
Query: 87 DSRMVLELQRRFQSTPYSNRLKVIQGDVLKTDLPYFD---ICVANIPYQISSPLTFKLLF 143
D R+ L+ ++++ D L + VAN+PY I++PL +LL
Sbjct: 77 DLRLRPVLEETLS--GL--PVRLVFQDALLYPWEEVPQGSLLVANLPYHIATPLVTRLL- 131
Query: 144 HQPAFRCAIIMFQKEFAMRLVAQPGDKLYCRLSVNTQLHARVSHLLKVGKNNFRPPPKVD 203
F + + QKE A R+ A+P Y L++ HA L + F PPPKV
Sbjct: 132 KTGRFARLVFLVQKEVAERMTARPKTPAYGVLTLRVAHHAVAERLFDLPPGAFFPPPKVW 191
Query: 204 SSVVRIEPRKP--RPQVNPVEWDGFLRICFIRKNKTLSSIFRLKNVLSMLEKNYRTLQAL 261
SS+VR+ P P + + + F ++ KTL + L + L+AL
Sbjct: 192 SSLVRLTPTGALDDPGLFRL-----VEAAFGKRRKTLLNA--LAAAGYPKARVEEALRAL 244
>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA
methyltransferase, mtase, anti resistance,
methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus}
PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*
Length = 249
Score = 203 bits (520), Expect = 2e-64
Identities = 65/215 (30%), Positives = 106/215 (49%), Gaps = 12/215 (5%)
Query: 28 ISFHKSKGQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEAG-KMVIAVEL 86
+ KS GQH+L + +++ I ++ I+ + ++E+G GTGNLTK LL+ K + +EL
Sbjct: 3 VRLKKSFGQHLLVSEGVLKKIAEELNIEEGNTVVEVGGGTGNLTKVLLQHPLKKLYVIEL 62
Query: 87 DSRMVLELQRRFQSTPYSNRLKVIQGDVLKTDLPYFD---ICVANIPYQISSPLTFKLLF 143
D MV L+ RL+VI D K V N+PY ++S + ++
Sbjct: 63 DREMVENLKSIGD-----ERLEVINEDASKFPFCSLGKELKVVGNLPYNVASLIIENTVY 117
Query: 144 HQPAFRCAIIMFQKEFAMRLVAQPGDKLYCRLSVNTQLHARVSHLLKVGKNNFRPPPKVD 203
++ A+ M QKE A +L G K LSV + V++++ V F PPPKV
Sbjct: 118 NKDCVPLAVFMVQKEVAEKL---QGKKDTGWLSVFVRTFYDVNYVMTVPPRFFVPPPKVQ 174
Query: 204 SSVVRIEPRKPRPQVNPVEWDGFLRICFIRKNKTL 238
S+V+++ + P + + FL F + K L
Sbjct: 175 SAVIKLVKNEKFPVKDLKNYKKFLTKIFQNRRKVL 209
>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription
factor, transcription initiation; 2.60A {Saccharomyces
cerevisiae} SCOP: c.66.1.24
Length = 353
Score = 167 bits (423), Expect = 9e-49
Identities = 42/290 (14%), Positives = 80/290 (27%), Gaps = 72/290 (24%)
Query: 28 ISFHKSKGQHILKNPLLVESIVQKAGIKST------DVILEIGPGTGNLTKKLLEAGKM- 80
G L NP + I K + T +L++ PG G +
Sbjct: 24 SKLKFFYGFKYLWNPTVYNKIFDKLDLTKTYKHPEELKVLDLYPGVGIQSAIFYNKYCPR 83
Query: 81 -VIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTDLPYFDI--------------- 124
+E S + L +F+ + L++++ D Y ++
Sbjct: 84 QYSLLEKRSSLYKFLNAKFEG----SPLQILKRDPYDWS-TYSNLIDEERIFVPEVQSSD 138
Query: 125 -------CVANIPYQISSPLTFKLL--------FHQPAFRCAIIMFQKEFAMRLVAQPGD 169
VAN+ + S L + L ++ ++ A +L+A+PG
Sbjct: 139 HINDKFLTVANVTGEGSEGLIMQWLSCIGNKNWLYRFGKVKMLLWMPSTTARKLLARPGM 198
Query: 170 KLYCRLSVNTQLHARVSHL---------------------LKVGKNNFRPPPKVDSSVVR 208
+ SV + + + P ++V
Sbjct: 199 HSRSKCSVVREAFTDTKLIAISDANELKGFDSQCIEEWDPILFSAAEIWPTKGKPIALVE 258
Query: 209 IEPRKPRPQVNPVEWDGFLRICFIRKNKTLSSIFRLKNVLSMLEKNYRTL 258
++P + WD R I K L V+ L +
Sbjct: 259 MDPID--FDFDVDNWDYVTRHLMILKRTP------LNTVMDSLGHGGQQY 300
Score = 28.0 bits (62), Expect = 4.8
Identities = 9/35 (25%), Positives = 16/35 (45%)
Query: 319 KDKVLAVLREGQFEEKRASKLTQQEFLYLLSLFNK 353
+ + + + +K LT EF+YL LF +
Sbjct: 298 QQYFNSRITDKDLLKKCPIDLTNDEFIYLTKLFME 332
>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2,
protein structure initiative; 2.80A {Bacillus
thuringiensis serovarkonkukian}
Length = 220
Score = 63.3 bits (154), Expect = 8e-12
Identities = 27/86 (31%), Positives = 40/86 (46%), Gaps = 6/86 (6%)
Query: 44 LVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEAGKMVIAVELDSRMVLELQRRFQSTPY 103
E I++ KS +LE G GTGNLT KLL AG+ V +E M + + +
Sbjct: 33 HYEDILEDVVNKSFGNVLEFGVGTGNLTNKLLLAGRTVYGIEPSREMRMIAKEK-----L 87
Query: 104 SNRLKVIQGDVLKTDLPY-FDICVAN 128
+ +GD L ++P D V+
Sbjct: 88 PKEFSITEGDFLSFEVPTSIDTIVST 113
>3ege_A Putative methyltransferase from antibiotic biosyn pathway;
YP_324569.1, putative methyltransferase from antibiotic
BIOS pathway; 2.40A {Anabaena variabilis atcc 29413}
Length = 261
Score = 58.4 bits (141), Expect = 6e-10
Identities = 20/89 (22%), Positives = 32/89 (35%), Gaps = 9/89 (10%)
Query: 42 PLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEAGKMVIAVELDSRMVLELQRRFQST 101
+V +I+ + VI +IG GTG + L G V AVE M +
Sbjct: 20 IRIVNAIINLLNLPKGSVIADIGAGTGGYSVALANQGLFVYAVEPSIVMRQQAVVH---- 75
Query: 102 PYSNRLKVIQGDVLKTDLP--YFDICVAN 128
+++ G LP D ++
Sbjct: 76 ---PQVEWFTGYAENLALPDKSVDGVISI 101
>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM,
structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus
thermophilus} PDB: 2yr0_A
Length = 263
Score = 55.7 bits (134), Expect = 5e-09
Identities = 18/79 (22%), Positives = 33/79 (41%), Gaps = 4/79 (5%)
Query: 52 AGIKSTDVILEIGPGTGNLTKKLLEAGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQ 111
V LE+G GTG + L+ G IA++ D+ M+ +++ +++V+Q
Sbjct: 35 HPKGEEPVFLELGVGTGRIALPLIARGYRYIALDADAAMLEVFRQKIAGVDR--KVQVVQ 92
Query: 112 GDVLKTDLP--YFDICVAN 128
D LP +
Sbjct: 93 ADARAIPLPDESVHGVIVV 111
>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC,
structural genomics, protein structure initiative; HET:
SAM; 2.72A {Aquifex aeolicus}
Length = 219
Score = 54.7 bits (132), Expect = 6e-09
Identities = 20/90 (22%), Positives = 38/90 (42%), Gaps = 8/90 (8%)
Query: 45 VESIVQKAGIKSTDVILEIGPGTGNLTKKLLEA----GKMVIAVELDSRMVLELQRRFQS 100
E ++++ G+K +L++G G G L + GK V A+++ MV +
Sbjct: 26 PEKVLKEFGLKEGMTVLDVGTGAGFYLPYLSKMVGEKGK-VYAIDVQEEMVNYAWEKVNK 84
Query: 101 TPYSNRLKVIQGDVLKTDLP--YFDICVAN 128
N ++V++ + K LP D
Sbjct: 85 LGLKN-VEVLKSEENKIPLPDNTVDFIFMA 113
>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2,
protein structure initiative; 2.50A {Sulfolobus
solfataricus}
Length = 170
Score = 52.4 bits (126), Expect = 2e-08
Identities = 13/85 (15%), Positives = 29/85 (34%), Gaps = 11/85 (12%)
Query: 46 ESIVQKAGIKSTDVILEIGPGTGNLTKKLLEAGKMVIAVELDSRMVLELQRRFQSTPYSN 105
E + VI++ G G G K LLE + ++++ + E++
Sbjct: 7 EEYLPNIFEGKKGVIVDYGCGNGFYCKYLLEFATKLYCIDINVIALKEVKE--------- 57
Query: 106 RLKVIQGDVLKTDLP--YFDICVAN 128
+ + ++P D +
Sbjct: 58 KFDSVITLSDPKEIPDNSVDFILFA 82
>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1,
putative methyltransferase; 1.90A {Anabaena variabilis
atcc 29413}
Length = 279
Score = 52.4 bits (126), Expect = 6e-08
Identities = 18/88 (20%), Positives = 38/88 (43%), Gaps = 11/88 (12%)
Query: 44 LVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEAGKMVIAVELDSRMVLELQRRFQSTPY 103
E ++Q + + IL++G GTG LT+K+ ++G V+ + + M+ + ++ +
Sbjct: 45 YGEDLLQLLNPQPGEFILDLGCGTGQLTEKIAQSGAEVLGTDNAATMIEKARQNYP---- 100
Query: 104 SNRLKVIQGDVLKTDLPY---FDICVAN 128
L D + D +N
Sbjct: 101 --HLHFDVADA--RNFRVDKPLDAVFSN 124
>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide
antibiotics biosynthesis, structural genomics; 2.00A
{Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A*
Length = 299
Score = 52.2 bits (125), Expect = 8e-08
Identities = 20/74 (27%), Positives = 35/74 (47%), Gaps = 5/74 (6%)
Query: 60 ILEIGPGTGNLTKKLLEAGKMVIAVELDSRMVLELQRRFQSTPYS--NRLKVIQGDVLKT 117
+LE+ G G LT L+ G V A+EL + ++ ++R P +R ++QGD+
Sbjct: 86 VLELAAGMGRLTFPFLDLGWEVTALELSTSVLAAFRKRLAEAPADVRDRCTLVQGDMSAF 145
Query: 118 DLPY-FD--ICVAN 128
L F + +
Sbjct: 146 ALDKRFGTVVISSG 159
>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase;
structural genomics, joint center for structural
genomics; HET: MSE SAM; 1.15A {Methanococcus
maripaludis}
Length = 219
Score = 51.3 bits (123), Expect = 9e-08
Identities = 21/92 (22%), Positives = 46/92 (50%), Gaps = 8/92 (8%)
Query: 42 PLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLE-AGKMVIAVELDSRMVLELQRRFQS 100
P++ E+I+ + GI + ++IG G G L+ L + + + A++ M +
Sbjct: 30 PIIAENIINRFGITA-GTCIDIGSGPGALSIALAKQSDFSIRALDFSKHMNEIALKNIAD 88
Query: 101 TPYSNRLKVIQGDVLKTDLPY----FDICVAN 128
++R++++QGDV ++P D+ V+
Sbjct: 89 ANLNDRIQIVQGDV--HNIPIEDNYADLIVSR 118
>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative,
structural genomics, NEW YORK SGX research center for
structural genomics; 1.86A {Methanosarcina mazei}
Length = 276
Score = 51.4 bits (123), Expect = 1e-07
Identities = 13/90 (14%), Positives = 30/90 (33%), Gaps = 5/90 (5%)
Query: 43 LLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEAGK--MVIAVELDSRMVLELQRRFQS 100
L + + +LE G G G T L + + ++++ + + + +
Sbjct: 24 TLEKLLHHDTVYPPGAKVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARENTEK 83
Query: 101 TPYSNRLKVIQGDVLKTDLP--YFDICVAN 128
N +K +Q ++ FD
Sbjct: 84 NGIKN-VKFLQANIFSLPFEDSSFDHIFVC 112
>1wzn_A SAM-dependent methyltransferase; structural genomics, riken
structural genomics/proteomics initiative, RSGI; HET:
SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43
Length = 252
Score = 51.0 bits (122), Expect = 1e-07
Identities = 22/87 (25%), Positives = 43/87 (49%), Gaps = 5/87 (5%)
Query: 45 VESIVQKAGIKSTDVILEIGPGTGNLTKKLLEAGKMVIAVELDSRMVLELQRRFQSTPYS 104
VE I ++ + +L++ GTG T +L E G V+ ++L M+ +R+ + +
Sbjct: 30 VEEIFKEDAKREVRRVLDLACGTGIPTLELAERGYEVVGLDLHEEMLRVARRKAKE--RN 87
Query: 105 NRLKVIQGDVLKTDLP-YFD--ICVAN 128
+++ +QGDVL+ FD +
Sbjct: 88 LKIEFLQGDVLEIAFKNEFDAVTMFFS 114
>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250,
NESG, structural genomics, PSI-2; HET: SAM; 1.68A
{Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A*
3t7r_A* 3t7t_A*
Length = 267
Score = 50.3 bits (120), Expect = 2e-07
Identities = 19/86 (22%), Positives = 33/86 (38%), Gaps = 7/86 (8%)
Query: 48 IVQKAGIKSTDVILEIGPGTGNLTKKLLEA-GKMVIAVELDSRMVLELQRRFQSTPYSNR 106
+ + +I +IG GTG T L V ++ S + R + + NR
Sbjct: 38 LSFIDNLTEKSLIADIGCGTGGQTMVLAGHVTGQVTGLDFLSGFIDIFNRNARQSGLQNR 97
Query: 107 LKVIQGDVLKTDLPY----FDICVAN 128
+ I G + DLP+ D+ +
Sbjct: 98 VTGIVGSM--DDLPFRNEELDLIWSE 121
>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding,
DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A
{Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A*
Length = 263
Score = 49.1 bits (117), Expect = 6e-07
Identities = 18/87 (20%), Positives = 38/87 (43%), Gaps = 10/87 (11%)
Query: 45 VESIVQKAGIKSTDVILEIGPGTGNLTKKLLEAGKMVIAVELDSRMVLELQRRFQSTPYS 104
+ ++V++ K+ + L++ GTG + L ++ V +EL + M+ +RR
Sbjct: 40 LAALVRRHSPKAASL-LDVACGTGMHLRHLADSFGTVEGLELSADMLAIARRRNP----- 93
Query: 105 NRLKVIQGDVLKTDLPY-FD--ICVAN 128
+ GD+ L F C+ +
Sbjct: 94 -DAVLHHGDMRDFSLGRRFSAVTCMFS 119
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 50.2 bits (119), Expect = 7e-07
Identities = 62/397 (15%), Positives = 106/397 (26%), Gaps = 133/397 (33%)
Query: 5 KIRKEKGKQKSGPY---QGQGLGAGGISFHKSKGQHILKNPLLVESIVQKA---GI---- 54
K+R+ + + G G+G K+ + + + VQ I
Sbjct: 139 KLRQALLELRPAKNVLIDGVL-GSG-----KT----WVALDVCLSYKVQCKMDFKIFWLN 188
Query: 55 ----KSTDVILEIGPGTGNL----TKKLLEAGKMVIAVELDSRMV-LELQRRFQSTPYSN 105
S + +LE+ L ++L + EL+R +S PY N
Sbjct: 189 LKNCNSPETVLEM---LQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYEN 245
Query: 106 RLKVIQGDVL-KTDLPYFDICVANIPYQISSPLTFKLLFHQPAFRCAIIMFQKEFAMRLV 164
L V+ +V F+ C I++ + + V
Sbjct: 246 CLLVLL-NVQNAKAWNAFN------------------------LSCKILLTTRF---KQV 277
Query: 165 AQPGDKLYCRLSVNTQLHARVSHLLKVGKNNFRPPPKVD--SSVVRIEPRK-PR------ 215
LS T H + H P + P+ PR
Sbjct: 278 TD-------FLSAATTTHISLDHHSMT----LTPDEVKSLLLKYLDCRPQDLPREVLTTN 326
Query: 216 PQV----------NPVEWDGFLRICFIRKNKTLSSIFRLKNVLSMLE--KNYRTLQALQS 263
P+ WD + + + + S NVL E K + L
Sbjct: 327 PRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSL---NVLEPAEYRKMFDRLSVFPP 383
Query: 264 SQNSSLGNTEIGTDTPSLGDSNGDQSMGV---DDGSDDEMDVEDDDGDSDVEGEVSEFKD 320
+ I P+ + + D D M V V++
Sbjct: 384 -------SAHI----PT-------ILLSLIWFDVIKSDVMVV------------VNKLHK 413
Query: 321 KVLAVLREGQFEEKRASKLTQQEFLYLLSLFNKAGIH 357
L E Q +E S + + L N+ +H
Sbjct: 414 YSLV---EKQPKESTIS-IPSIYLELKVKLENEYALH 446
Score = 44.5 bits (104), Expect = 4e-05
Identities = 50/362 (13%), Positives = 105/362 (29%), Gaps = 96/362 (26%)
Query: 28 ISFHKSKGQHILKN--PLLVESIVQKAGIKST-DVILEIGPGTGNLTKKLLEAGKMVIA- 83
+ F + Q+ K+ + ++ V K D+ I L+K+ E ++++
Sbjct: 7 MDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSI------LSKE--EIDHIIMSK 58
Query: 84 -VELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTDLPYFDICVANIPYQISSPLTFKLL 142
+ + Q ++ +VL+ + + + SP K
Sbjct: 59 DAVSGTLRLFWTLLSKQE----EMVQKFVEEVLRINYKF-----------LMSP--IKTE 101
Query: 143 FHQPAFRCAIIMFQKEFAMRL--VAQPGDKLY-CRLSVNTQLHARVSHLLKVGKNNFRPP 199
QP+ + + Q++ RL Q K RL +L LL++ RP
Sbjct: 102 QRQPSMMTRMYIEQRD---RLYNDNQVFAKYNVSRLQPYLKLR---QALLEL-----RPA 150
Query: 200 PKVD-------------SSVVRIEPRKPRPQVNPVEWDGFLRICFIRKNKTLSSIFRLKN 246
V V + + + W + N + + L+
Sbjct: 151 KNVLIDGVLGSGKTWVALDVCLSYKVQCKMD-FKIFW-----LNLKNCNSPETVLEMLQK 204
Query: 247 VLSMLEKNYRTLQALQSSQNSSLGNTEIGTDTPS--LGDSNGDQSMGVDDGSDDEMDVED 304
+L ++ N+ S N L L + + V +V++
Sbjct: 205 LLYQIDPNW--TSRSDHSSNIKL-RIHSIQAELRRLLKSKPYENCLLVLL------NVQN 255
Query: 305 -------DDG--------DSDVEGEVSEFKDKVLAVLREGQFEEKRASKLTQQEFLYLLS 349
+ V +S +++ + + LT E LL
Sbjct: 256 AKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISL-------DHHSMTLTPDEVKSLLL 308
Query: 350 LF 351
+
Sbjct: 309 KY 310
>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate,
antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A
{Streptomyces venezuelae}
Length = 239
Score = 48.6 bits (116), Expect = 7e-07
Identities = 14/87 (16%), Positives = 34/87 (39%), Gaps = 10/87 (11%)
Query: 45 VESIVQKAGIKSTDVILEIGPGTGNLTKKLLEAGKMVIAVELDSRMVLELQRRFQSTPYS 104
+ +V+ +++ + L++ GTG + + +EL M+ ++R
Sbjct: 30 IADLVRSRTPEASSL-LDVACGTGTHLEHFTKEFGDTAGLELSEDMLTHARKRLP----- 83
Query: 105 NRLKVIQGDVLKTDLPY-FD--ICVAN 128
+ QGD+ L F + + +
Sbjct: 84 -DATLHQGDMRDFRLGRKFSAVVSMFS 109
>1xxl_A YCGJ protein; structural genomics, protein structure initiative,
PSI, NEW YORK SGX research center for structural
genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP:
c.66.1.41 PDB: 2glu_A*
Length = 239
Score = 48.2 bits (115), Expect = 1e-06
Identities = 19/88 (21%), Positives = 33/88 (37%), Gaps = 7/88 (7%)
Query: 45 VESIVQKAGIKSTDVILEIGPGTGNLTKKLLEAGKMVIAVELDSRMVLELQRRFQSTPYS 104
+ +++ A ++ +L+IG G G+ + I V+ MV Q
Sbjct: 10 LGLMIKTAECRAEHRVLDIGAGAGHTALAFSPYVQECIGVDATKEMVEVASSFAQEKGVE 69
Query: 105 NRLKVIQGDVLKTDLPY----FDICVAN 128
N ++ QG LP+ FDI
Sbjct: 70 N-VRFQQGTA--ESLPFPDDSFDIITCR 94
>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase,
transferase; HET: SAH PG4; 2.70A {Rhodobacter
capsulatus}
Length = 204
Score = 47.9 bits (114), Expect = 1e-06
Identities = 16/78 (20%), Positives = 37/78 (47%), Gaps = 2/78 (2%)
Query: 48 IVQKAGIKSTDVILEIGPGTGNLTKKLLEAGKMVIAVELDSRMVLELQRRFQSTPYSNRL 107
+ + +++ +IG G+G+++ + AG I +E + + +Q+ + S R+
Sbjct: 47 TLAALAPRRGELLWDIGGGSGSVSVEWCLAGGRAITIEPRADRIENIQKNIDTYGLSPRM 106
Query: 108 KVIQGDVLK--TDLPYFD 123
+ +QG DLP +
Sbjct: 107 RAVQGTAPAALADLPLPE 124
>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine,
nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A
{Methanothermobacter thermautotrophicusorganism_taxid}
PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*
Length = 298
Score = 48.6 bits (115), Expect = 1e-06
Identities = 21/88 (23%), Positives = 35/88 (39%), Gaps = 4/88 (4%)
Query: 44 LVESIVQKAGIKSTDVILEIGPGTGNLTKKLL--EAGKMVIAVELDSRMVLELQRRFQST 101
L+++ + + + IG G LT LL G V VE++ + ++ +
Sbjct: 110 LLKNEAALGRFRRGERAVFIGGGPLPLTGILLSHVYGMRVNVVEIEPDIAELSRKVIEGL 169
Query: 102 PYSNRLKVIQGDVLKTDLPYFD-ICVAN 128
+ VI GD D FD + VA
Sbjct: 170 GVDG-VNVITGDETVIDGLEFDVLMVAA 196
>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2,
protein STRU initiative, northeast structural genomics
consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} PDB:
2gh1_A
Length = 284
Score = 48.4 bits (115), Expect = 1e-06
Identities = 23/129 (17%), Positives = 45/129 (34%), Gaps = 27/129 (20%)
Query: 52 AGIKSTDVILEIGPGTGNLTKKLLE---AGKMVIAVELDSRMVLELQRRFQSTPYSNRLK 108
I I++ G G G L L+ G ++ ++ E + F+ PY +
Sbjct: 18 WKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPYDSEF- 76
Query: 109 VIQGDVLKTDLPY---FDICVANIPYQISSPLTFKLLFHQPAFRCAIIMFQKEFAMRLVA 165
++GD T++ +DI + + L H + ++ M
Sbjct: 77 -LEGDA--TEIELNDKYDIAICHA-----------FLLHMTTPETML----QK--MIHSV 116
Query: 166 QPGDKLYCR 174
+ G K+ C
Sbjct: 117 KKGGKIICF 125
>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural
genomics, protein structure initiative, PSI; 2.50A
{Clostridium acetobutylicum} SCOP: c.66.1.43
Length = 246
Score = 47.8 bits (114), Expect = 1e-06
Identities = 20/83 (24%), Positives = 38/83 (45%), Gaps = 4/83 (4%)
Query: 45 VESIVQKAGIKSTDVILEIGPGTGNLTKKLLEAGKMVIAVELDSRMVLELQRRFQSTPYS 104
+ + + D L++ GTGNLT+ L K AV+L M+ E + +F+S
Sbjct: 27 IIEKCVENNLVFDD-YLDLACGTGNLTENLCPKFKNTWAVDLSQEMLSEAENKFRS--QG 83
Query: 105 NRLKVIQGDVLKTDLPY-FDICV 126
+ ++ D+ ++ FD+
Sbjct: 84 LKPRLACQDISNLNINRKFDLIT 106
>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET:
SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*
Length = 218
Score = 47.2 bits (112), Expect = 2e-06
Identities = 16/72 (22%), Positives = 27/72 (37%), Gaps = 10/72 (13%)
Query: 60 ILEIGPGTGNLTKKLLEAGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTDL 119
+LE+ GTG T+ L V A++ + M+ E R ++ Q D+ D
Sbjct: 50 VLELASGTGYWTRHLSGLADRVTALDGSAEMIAEAGRHGLD-----NVEFRQQDL--FDW 102
Query: 120 PY---FDICVAN 128
+D
Sbjct: 103 TPDRQWDAVFFA 114
>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown
function, PSI-2, protein structure initiative; 2.09A
{Methanosarcina mazei}
Length = 234
Score = 47.5 bits (113), Expect = 2e-06
Identities = 20/72 (27%), Positives = 36/72 (50%), Gaps = 6/72 (8%)
Query: 60 ILEIGPGTGNLTKKLLEA--GKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKT 117
IL++G GTG L+ L+E V++ +M+ + RF+ ++K I+ D K
Sbjct: 48 ILDLGAGTGLLSAFLMEKYPEATFTLVDMSEKMLEIAKNRFRGNL---KVKYIEADYSKY 104
Query: 118 DLP-YFDICVAN 128
D +D+ V+
Sbjct: 105 DFEEKYDMVVSA 116
>1vl5_A Unknown conserved protein BH2331; putative methyltransferase,
structural genomics, joint cente structural genomics,
JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP:
c.66.1.41
Length = 260
Score = 47.5 bits (113), Expect = 2e-06
Identities = 16/86 (18%), Positives = 38/86 (44%), Gaps = 7/86 (8%)
Query: 45 VESIVQKAGIKSTDVILEIGPGTGNLTKKLLEAGKMVIAVELDSRMVLELQRRFQSTPYS 104
+ ++Q A +K + +L++ G G++ K V+A +L ++ + + +
Sbjct: 26 LAKLMQIAALKGNEEVLDVATGGGHVANAFAPFVKKVVAFDLTEDILKVARAFIEGNGHQ 85
Query: 105 NRLKVIQGDVLKTDLPY----FDICV 126
++ +QGD +P+ F I
Sbjct: 86 Q-VEYVQGDA--EQMPFTDERFHIVT 108
>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein
structure initiative, NEW YORK SGX research center for
structural genomics; 1.70A {Bacillus thuringiensis}
Length = 242
Score = 47.2 bits (112), Expect = 2e-06
Identities = 20/82 (24%), Positives = 38/82 (46%), Gaps = 10/82 (12%)
Query: 51 KAGIKSTDVILEIGPGTGNLTKKLLEAGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVI 110
+ +K +L++G G G T KL G + V++ M+ + + R + L I
Sbjct: 48 EQYVKKEAEVLDVGCGDGYGTYKLSRTGYKAVGVDISEVMIQKGKERGEGP----DLSFI 103
Query: 111 QGDVLKTDLPY----FDICVAN 128
+GD+ + LP+ F+ +A
Sbjct: 104 KGDL--SSLPFENEQFEAIMAI 123
>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium,
SGC, methyltransferase, LOC84291, transferase; HET: SAH;
1.30A {Homo sapiens}
Length = 215
Score = 46.6 bits (110), Expect = 3e-06
Identities = 22/76 (28%), Positives = 36/76 (47%), Gaps = 6/76 (7%)
Query: 54 IKSTDVILEIGPGTGNLTKKLLEAG-KMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQG 112
++ D IL +G G L+ +L G V +V+ S +V +Q + P +L+
Sbjct: 40 LRPEDRILVLGCGNSALSYELFLGGFPNVTSVDYSSVVVAAMQACYAHVP---QLRWETM 96
Query: 113 DVLKTDLP--YFDICV 126
DV K D P FD+ +
Sbjct: 97 DVRKLDFPSASFDVVL 112
>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type
fold, S-adenosyl-L- methionine; HET: SAH; 1.80A
{Escherichia coli}
Length = 210
Score = 46.4 bits (111), Expect = 3e-06
Identities = 21/79 (26%), Positives = 36/79 (45%), Gaps = 2/79 (2%)
Query: 35 GQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEAGKMVIAVELDSRMVLEL 94
GQ I + P +V + + + +LEIG G+G T L + V +VE + +
Sbjct: 57 GQTISQ-PYMVARMTELLELTPQSRVLEIGTGSGYQTAILAHLVQHVCSVERIKGLQWQA 115
Query: 95 QRRFQSTPYSNRLKVIQGD 113
+RR ++ N + GD
Sbjct: 116 RRRLKNLDLHN-VSTRHGD 133
>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural
genomics, PSI-2, protein structure initiative; HET: SAH;
2.00A {Corynebacterium glutamicum atcc 13032}
Length = 203
Score = 45.9 bits (109), Expect = 5e-06
Identities = 25/168 (14%), Positives = 43/168 (25%), Gaps = 33/168 (19%)
Query: 60 ILEIGPGTGNLTKKLLEAGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTDL 119
IL++G GTG T L G + +E +R+V ++ + G +
Sbjct: 45 ILDVGSGTGRWTGHLASLGHQIEGLEPATRLVELARQTHP------SVTFHHGTITDLSD 98
Query: 120 P--YFDICVANIPYQISSPLTFKLLFHQPAFRCAIIMFQKEFAMRLVAQPGDKLYCRLSV 177
+ +A + L+ P + M + G L
Sbjct: 99 SPKRWAGLLAW----------YSLIHMGPGELPDAL---VALRMAVE--DGGGLLMSFFS 143
Query: 178 NTQLHARVSHLLKVGKNNFRPPPKVDS-------SVVRIEPRKPRPQV 218
L V P P++ V P
Sbjct: 144 GPSLEPM---YHPVATAYRWPLPELAQALETAGFQVTSSHWDPRFPHA 188
>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase
domain, structural genomics; HET: NHE CIT; 2.00A
{Corynebacterium glutamicum atcc 13032}
Length = 195
Score = 45.6 bits (108), Expect = 5e-06
Identities = 16/71 (22%), Positives = 31/71 (43%), Gaps = 8/71 (11%)
Query: 60 ILEIGPGTGNLTKKLLEAGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTDL 119
IL+ G G G + L + G V+ +LD ++ ++ F + + GD+ +
Sbjct: 50 ILDAGCGQGRIGGYLSKQGHDVLGTDLDPILIDYAKQDFP------EARWVVGDLSVDQI 103
Query: 120 P--YFDICVAN 128
FD+ V+
Sbjct: 104 SETDFDLIVSA 114
>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein
structure initiative, northeast structural genomics
consortium, NESG; 2.30A {Bacteroides thetaiotaomicron}
PDB: 3t0i_A* 3svz_A* 3sxj_A*
Length = 257
Score = 45.6 bits (108), Expect = 8e-06
Identities = 16/86 (18%), Positives = 32/86 (37%), Gaps = 7/86 (8%)
Query: 48 IVQKAGIKSTDVILEIGPGTGNLTKKLLEA-GKMVIAVELDSRMVLELQRRFQSTPYSNR 106
+ + I +IG GTG T L + + ++L + ++R
Sbjct: 38 VSFINELTDDAKIADIGCGTGGQTLFLADYVKGQITGIDLFPDFIEIFNENAVKANCADR 97
Query: 107 LKVIQGDVLKTDLPY----FDICVAN 128
+K I G + +LP+ D+ +
Sbjct: 98 VKGITGSM--DNLPFQNEELDLIWSE 121
>3ocj_A Putative exported protein; structural genomics, PSI-2, protein
structure initiative, MI center for structural genomics,
MCSG; HET: PLM; 1.39A {Bordetella parapertussis}
Length = 305
Score = 45.8 bits (108), Expect = 9e-06
Identities = 11/81 (13%), Positives = 30/81 (37%), Gaps = 4/81 (4%)
Query: 52 AGIKSTDVILEIGPGTGNLTKKLLEA---GKMVIAVELDSRMVLELQRRFQSTPYSNRLK 108
++ V+ + G + L + G ++ ++ D + R + ++
Sbjct: 114 RHLRPGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHALAGQIT 173
Query: 109 VIQGDVLKTDLP-YFDICVAN 128
+ + D K D +D+ +N
Sbjct: 174 LHRQDAWKLDTREGYDLLTSN 194
>2p7i_A Hypothetical protein; putative methyltransferase, structural
genomics, joint cente structural genomics, JCSG; 1.74A
{Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41
PDB: 2p7h_A
Length = 250
Score = 45.2 bits (107), Expect = 1e-05
Identities = 16/70 (22%), Positives = 26/70 (37%), Gaps = 6/70 (8%)
Query: 60 ILEIGPGTGNLTKKLLEAGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTDL 119
+LE+G G+ T +L E + VE + Q R + + + I L
Sbjct: 46 LLELGSFKGDFTSRLQEHFNDITCVEASEEAISHAQGRLK-----DGITYIHSRFEDAQL 100
Query: 120 P-YFDICVAN 128
P +D V
Sbjct: 101 PRRYDNIVLT 110
>3cc8_A Putative methyltransferase; structural genomics, joint center for
structural genomics, JCSG, protein structure initiative,
PS transferase; 1.64A {Bacillus cereus}
Length = 230
Score = 44.7 bits (106), Expect = 2e-05
Identities = 24/102 (23%), Positives = 41/102 (40%), Gaps = 19/102 (18%)
Query: 29 SFHKSKGQHIL--KNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEAGKMVIAVEL 86
S ++ K H NP L++ I ++ +L+IG +G L + E G V +E
Sbjct: 8 SLYEEKSGHYYNAVNPNLLKHIKKEWK-----EVLDIGCSSGALGAAIKENGTRVSGIEA 62
Query: 87 DSRMVLELQRRFQSTPYSNRLKVIQGDVLKTDLPY----FDI 124
+ + + V+ GD+ D+PY FD
Sbjct: 63 FPEAAEQAKEKL--------DHVVLGDIETMDMPYEEEQFDC 96
>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD
factor, fixation, symbiosis, alpha/beta structure; HET:
SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A*
Length = 216
Score = 43.7 bits (103), Expect = 3e-05
Identities = 16/70 (22%), Positives = 28/70 (40%), Gaps = 4/70 (5%)
Query: 60 ILEIGPGTGNLTKKLLEAGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTDL 119
LEIG G T+KL K + +++ R + +R + + D+L+
Sbjct: 55 GLEIGCAAGAFTEKLAPHCKRLTVIDVMPRAIGRACQRTKRWS---HISWAATDILQFST 111
Query: 120 P-YFDICVAN 128
FD+ V
Sbjct: 112 AELFDLIVVA 121
>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase,
S-adenosylmethionine, structural GE NPPSFA; HET: SAM;
2.20A {Aquifex aeolicus}
Length = 248
Score = 43.8 bits (103), Expect = 3e-05
Identities = 19/98 (19%), Positives = 30/98 (30%), Gaps = 3/98 (3%)
Query: 35 GQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEAGKMVIAVELDSRMVLEL 94
I+ P I K + +LE G G+G L L E V E
Sbjct: 71 KTQIIY-PKDSFYIALKLNLNKEKRVLEFGTGSGALLAVLSEVAGEVWTFEAVEEFYKTA 129
Query: 95 QRRFQSTPYSNRLKVIQGDVLKTDLP--YFDICVANIP 130
Q+ + +K D ++P F ++
Sbjct: 130 QKNLKKFNLGKNVKFFNVDFKDAEVPEGIFHAAFVDVR 167
>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein
structure initiative, PSI, center for eukaryotic
structural genomics; HET: MSE SAH T8N; 1.12A
{Saccharomyces cerevisiae}
Length = 299
Score = 44.3 bits (104), Expect = 3e-05
Identities = 12/97 (12%), Positives = 33/97 (34%), Gaps = 13/97 (13%)
Query: 44 LVESIVQKAGIKSTDVILEIGPGTGNLTKKL---LEAGKMVIAVELDSRMVLELQRRFQS 100
+ I + +++++G G G T ++ L+ + +I +L + M+ + +
Sbjct: 25 FYKMIDEYHD-GERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEG 83
Query: 101 TPYSN-RLKVIQGDVLKTDLPY--------FDICVAN 128
+P + + D+ A
Sbjct: 84 SPDTYKNVSFKISSSDDFKFLGADSVDKQKIDMITAV 120
>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI,
intermolecular contacts, R specificity, tetramer,
disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB:
3lga_A* 3lhd_C*
Length = 255
Score = 43.8 bits (103), Expect = 3e-05
Identities = 21/93 (22%), Positives = 37/93 (39%), Gaps = 4/93 (4%)
Query: 42 PLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEAGK---MVIAVELDSRMVLELQRRF 98
P IV AGI D I+E G G+G LT L V++ E+
Sbjct: 79 PKDAALIVAYAGISPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENI 138
Query: 99 QSTPYSNRLKVIQGDVLK-TDLPYFDICVANIP 130
+ + +R+ + D+ + + D + ++P
Sbjct: 139 KWAGFDDRVTIKLKDIYEGIEEENVDHVILDLP 171
>3g5l_A Putative S-adenosylmethionine dependent methyltransferase;
structural genomics, PSI-2, protein structure
initiative; 2.35A {Listeria monocytogenes str}
Length = 253
Score = 43.8 bits (103), Expect = 3e-05
Identities = 15/86 (17%), Positives = 36/86 (41%), Gaps = 7/86 (8%)
Query: 46 ESIVQKAGIKSTDVILEIGPGTGNLTKKLLEAG-KMVIAVELDSRMVLELQRRFQSTPYS 104
+ + + +L++G G G E G K V+ ++L RM+ E +R+ S
Sbjct: 34 HELKKMLPDFNQKTVLDLGCGFGWHCIYAAEHGAKKVLGIDLSERMLTEAKRKTT----S 89
Query: 105 NRLKVIQGDVLKTDLP--YFDICVAN 128
+ Q + + +++ +++
Sbjct: 90 PVVCYEQKAIEDIAIEPDAYNVVLSS 115
>3lpm_A Putative methyltransferase; structural genomics, protein structure
initiative, NEW YORK structural genomix research
consortium, nysgxrc; 2.40A {Listeria monocytogenes}
Length = 259
Score = 43.6 bits (103), Expect = 4e-05
Identities = 17/79 (21%), Positives = 35/79 (44%), Gaps = 9/79 (11%)
Query: 60 ILEIGPGTGNLTKKLLEAGK---MVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLK 116
I+++ G G + LL + + ++ VE+ R+ +R +++++I+ D+ K
Sbjct: 53 IIDLCSGNGIIP--LLLSTRTKAKIVGVEIQERLADMAKRSVAYNQLEDQIEIIEYDLKK 110
Query: 117 TDLPY----FDICVANIPY 131
DI N PY
Sbjct: 111 ITDLIPKERADIVTCNPPY 129
>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural
genomics, beta barrel, rossmann fold, tetramer; HET:
SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP:
c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*
Length = 192
Score = 43.1 bits (102), Expect = 4e-05
Identities = 19/84 (22%), Positives = 38/84 (45%), Gaps = 2/84 (2%)
Query: 48 IVQKAGIKSTDVILEIGPGTGNLTKKLLEAGKMVIAVELDSRMVLELQRRFQSTPYSNRL 107
I+ A DV +++G GTG +T +L + V A++ + + + Q + +
Sbjct: 25 IMCLAEPGKNDVAVDVGCGTGGVTLELAGRVRRVYAIDRNPEAISTTEMNLQRHGLGDNV 84
Query: 108 KVIQGDVLKT--DLPYFDICVANI 129
+++GD + +P DI V
Sbjct: 85 TLMEGDAPEALCKIPDIDIAVVGG 108
>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted
transferase, predicted O-methyltransferase, PFAM
PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str}
Length = 260
Score = 43.7 bits (103), Expect = 4e-05
Identities = 29/183 (15%), Positives = 53/183 (28%), Gaps = 34/183 (18%)
Query: 52 AGIKSTDVILEIGPGTGNLTKKLLEAGKM----VIAVELDSRMVLELQR---RFQSTPYS 104
I ++G G G + A ++ V E M +R + +S
Sbjct: 32 VADDRACRIADLGAGAGAAG--MAVAARLEKAEVTLYERSQEMAEFARRSLELPDNAAFS 89
Query: 105 NRLKVIQGDVLKTDLPY---------FDICVANIPYQISSPLTFKLLFHQPAFRCAIIMF 155
R++V++ DV F + N PY + A +F
Sbjct: 90 ARIEVLEADVTLRAKARVEAGLPDEHFHHVIMNPPYNDAGDRRTPDALKAEAHAMTEGLF 149
Query: 156 QK--EFAMRLVAQPGDKLYCRLSVNTQLHARVSHLLKVGKNNFRPPPKVDSSVVRIEPRK 213
+ A ++ G +L V+ ++ + F + I
Sbjct: 150 EDWIRTASAIM-VSGGQLSL-----ISRPQSVAEIIAACGSRFGG--------LEITLIH 195
Query: 214 PRP 216
PRP
Sbjct: 196 PRP 198
>1yb2_A Hypothetical protein TA0852; structural genomics,
methyltransferase, thermoplasma acidoph midwest center
for structural genomics, MCSG; 2.01A {Thermoplasma
acidophilum} SCOP: c.66.1.13
Length = 275
Score = 43.9 bits (103), Expect = 4e-05
Identities = 20/88 (22%), Positives = 39/88 (44%), Gaps = 6/88 (6%)
Query: 48 IVQKAGIKSTDVILEIGPGTGNLTKKLLEA----GKMVIAVELDSRMVLELQRRFQSTPY 103
I+ + G++ ILE+G G+GN++ +L A G + VE D + +
Sbjct: 102 IIMRCGLRPGMDILEVGVGSGNMSSYILYALNGKGT-LTVVERDEDNLKKAMDNLSEFYD 160
Query: 104 SNRLKVIQGDVLKTDLP-YFDICVANIP 130
++ + D+ +D +A+IP
Sbjct: 161 IGNVRTSRSDIADFISDQMYDAVIADIP 188
>3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus
norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A*
Length = 349
Score = 43.9 bits (103), Expect = 4e-05
Identities = 21/87 (24%), Positives = 41/87 (47%), Gaps = 4/87 (4%)
Query: 46 ESIVQKAGIKSTDVILEIGPGTGNLTKKLLEAG-KMVIAVELDSRMVLELQRRFQSTPYS 104
S+ + V+L++G GTG L +AG + VI +E S + + ++
Sbjct: 56 NSMFHNRHLFKDKVVLDVGSGTGILCMFAAKAGARKVIGIEC-SSISDYAVKIVKANKLD 114
Query: 105 NRLKVIQGDVLKTDLPY--FDICVANI 129
+ + +I+G V + +LP DI ++
Sbjct: 115 HVVTIIKGKVEEVELPVEKVDIIISEW 141
>3b3j_A Histone-arginine methyltransferase CARM1; protein arginine
methyltransferase 4, APO catalytic domain, regulator,
mRNA processing; 2.55A {Rattus norvegicus}
Length = 480
Score = 44.0 bits (103), Expect = 5e-05
Identities = 23/83 (27%), Positives = 42/83 (50%), Gaps = 3/83 (3%)
Query: 46 ESIVQKAGIKSTDVILEIGPGTGNLTKKLLEAG-KMVIAVELDSRMVLELQRRFQSTPYS 104
+I+Q ++L++G G+G L+ +AG + + AVE + M + +S +
Sbjct: 148 RAILQNHTDFKDKIVLDVGCGSGILSFFAAQAGARKIYAVEAST-MAQHAEVLVKSNNLT 206
Query: 105 NRLKVIQGDVLKTDLPY-FDICV 126
+R+ VI G V + LP DI +
Sbjct: 207 DRIVVIPGKVEEVSLPEQVDIII 229
>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein
structure initiative, MCSG, midwest center for
structural genomics; 2.19A {Deinococcus radiodurans}
Length = 226
Score = 43.1 bits (101), Expect = 5e-05
Identities = 12/74 (16%), Positives = 23/74 (31%), Gaps = 12/74 (16%)
Query: 60 ILEIGPGTGNLTKKLLEAGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTDL 119
+LE G G G + A + ++ + V + + K +L
Sbjct: 52 VLEAGCGHGPDAARFGPQAARWAAYDFSPELLKLARANAP------HADVYEWNG-KGEL 104
Query: 120 PY-----FDICVAN 128
P F + V+
Sbjct: 105 PAGLGAPFGLIVSR 118
>2y1w_A Histone-arginine methyltransferase CARM1; histone modification;
HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A*
3b3g_A 2v74_B* 2v7e_A
Length = 348
Score = 43.5 bits (102), Expect = 5e-05
Identities = 31/139 (22%), Positives = 57/139 (41%), Gaps = 21/139 (15%)
Query: 46 ESIVQKAGIKSTDVILEIGPGTGNLTKKLLEAG-KMVIAVELDSRMVLELQRRFQSTPYS 104
+I+Q ++L++G G+G L+ +AG + + AVE + M + +S +
Sbjct: 40 RAILQNHTDFKDKIVLDVGCGSGILSFFAAQAGARKIYAVEAST-MAQHAEVLVKSNNLT 98
Query: 105 NRLKVIQGDVLKTDLPY-FDICVANIPYQISSPLTFKLLFHQPAFRCAI----------I 153
+R+ VI G V + LP DI + S +LF++ +
Sbjct: 99 DRIVVIPGKVEEVSLPEQVDIII--------SEPMGYMLFNERMLESYLHAKKYLKPSGN 150
Query: 154 MFQKEFAMRLVAQPGDKLY 172
MF + L ++LY
Sbjct: 151 MFPTIGDVHLAPFTDEQLY 169
>3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine
methyltransferase, methylation; HET: SAH; 2.61A
{Arabidopsis thaliana}
Length = 376
Score = 42.9 bits (100), Expect = 9e-05
Identities = 20/86 (23%), Positives = 38/86 (44%), Gaps = 3/86 (3%)
Query: 46 ESIVQKAGIKSTDVILEIGPGTGNLTKKLLEAG-KMVIAVELDSRMVLELQRRFQSTPYS 104
++ Q +L++G G+G L +AG + V AVE M + ++
Sbjct: 53 NAVFQNKHHFEGKTVLDVGTGSGILAIWSAQAGARKVYAVEATK-MADHARALVKANNLD 111
Query: 105 NRLKVIQGDVLKTDLP-YFDICVANI 129
+ ++VI+G V LP D+ ++
Sbjct: 112 HIVEVIEGSVEDISLPEKVDVIISEW 137
>2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target
base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET:
5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27
d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A*
2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A*
Length = 421
Score = 43.1 bits (101), Expect = 9e-05
Identities = 20/94 (21%), Positives = 33/94 (35%), Gaps = 14/94 (14%)
Query: 42 PLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEAGK---MVIAVELDSRMVLELQRRF 98
P +V+ +V A +LE G + EA + VE+D + +
Sbjct: 25 PEVVDFMVSLAEAPRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKAL------- 77
Query: 99 QSTPYSNRLKVIQGDVLKTDLP-YFDICVANIPY 131
+ I D L + FD+ + N PY
Sbjct: 78 ---DLPPWAEGILADFLLWEPGEAFDLILGNPPY 108
>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural
genomics, PSI-2, protein structure initiative; HET: SAM;
1.60A {Rhodopseudomonas palustris}
Length = 211
Score = 42.2 bits (99), Expect = 1e-04
Identities = 18/70 (25%), Positives = 26/70 (37%), Gaps = 8/70 (11%)
Query: 60 ILEIGPGTGNLTKKLLEAGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTDL 119
ILE+G G G + +L AG V A + + E RR V + D
Sbjct: 47 ILELGCGAGYQAEAMLAAGFDVDATDGSPELAAEASRRLGRP-------VRTMLFHQLDA 99
Query: 120 P-YFDICVAN 128
+D A+
Sbjct: 100 IDAYDAVWAH 109
>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural
genomics, joint center for structural genom JCSG; HET:
SAH; 2.10A {Pseudomonas putida KT2440}
Length = 227
Score = 42.1 bits (99), Expect = 1e-04
Identities = 16/89 (17%), Positives = 35/89 (39%), Gaps = 7/89 (7%)
Query: 43 LLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEAGKMVIAVELDSRMVLELQRRFQSTP 102
+ ++I+ + + +L++G G G L + L + G + V+ D +V +
Sbjct: 39 VTDQAILLAILGRQPERVLDLGCGEGWLLRALADRGIEAVGVDGDRTLVDAARAAGAGEV 98
Query: 103 YSNRLKVIQGDVLKTDLPY---FDICVAN 128
+ Q +P +D+ AN
Sbjct: 99 --HLASYAQLAEA--KVPVGKDYDLICAN 123
>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase;
NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti}
Length = 243
Score = 42.1 bits (99), Expect = 1e-04
Identities = 16/72 (22%), Positives = 32/72 (44%), Gaps = 7/72 (9%)
Query: 60 ILEIGPGTGNLTKKLLEAG-KMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTD 118
I+++G G G + E G V+ ++L +M+ + T + + D+ K
Sbjct: 47 IVDLGCGFGWFCRWAHEHGASYVLGLDLSEKMLARARAAGPDT----GITYERADLDKLH 102
Query: 119 LP--YFDICVAN 128
LP FD+ ++
Sbjct: 103 LPQDSFDLAYSS 114
>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein;
ubiquinone/menaquinone biosynthesis
methyltransferase-relate protein; HET: SAI; 2.35A
{Thermotoga maritima} SCOP: c.66.1.41
Length = 260
Score = 41.8 bits (98), Expect = 1e-04
Identities = 16/79 (20%), Positives = 32/79 (40%), Gaps = 9/79 (11%)
Query: 51 KAGIKSTDVILEIGPGTGNLTKKLLEAGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVI 110
+ +K+ +L++G GTG + L E G V+ V+ M+ + + V+
Sbjct: 49 EEYLKNPCRVLDLGGGTGKWSLFLQERGFEVVLVDPSKEMLEVAREK-------GVKNVV 101
Query: 111 QGDVLKTDLPY--FDICVA 127
+ P F+ +A
Sbjct: 102 EAKAEDLPFPSGAFEAVLA 120
>3bkx_A SAM-dependent methyltransferase; YP_807781.1,
cyclopropane-fatty-acyl-phospholipid synthase-L protein,
methyltransferase domain; 1.85A {Lactobacillus casei}
Length = 275
Score = 41.9 bits (98), Expect = 2e-04
Identities = 24/96 (25%), Positives = 39/96 (40%), Gaps = 16/96 (16%)
Query: 46 ESIVQKAGIKSTDVILEIGPGTGNLTKKLLEA----GKMVIAVELDS------RMVLELQ 95
+I + +K + ILEIG G G+L+ L + G V +++ S + +
Sbjct: 33 LAIAEAWQVKPGEKILEIGCGQGDLSAVLADQVGSSGH-VTGIDIASPDYGAPLTLGQAW 91
Query: 96 RRFQSTPYSNRLKVIQGDVLKTDLP-----YFDICV 126
+ P +RL V L DL +FD V
Sbjct: 92 NHLLAGPLGDRLTVHFNTNLSDDLGPIADQHFDRVV 127
>2gs9_A Hypothetical protein TT1324; methyl transferase, structural
genomics, NPPSFA, national PR protein structural and
functional analyses; HET: SAH; 2.60A {Thermus
thermophilus}
Length = 211
Score = 41.3 bits (97), Expect = 2e-04
Identities = 17/82 (20%), Positives = 32/82 (39%), Gaps = 14/82 (17%)
Query: 51 KAGIKSTDVILEIGPGTGNLTKKLLEAGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVI 110
K + + +LE+G GTG ++L + VE M+ +RR + +
Sbjct: 31 KGLLPPGESLLEVGAGTGYWLRRLPYPQ--KVGVEPSEAMLAVGRRR------APEATWV 82
Query: 111 QGDVLKTDLPY----FDICVAN 128
+ LP+ FD+ +
Sbjct: 83 RAWG--EALPFPGESFDVVLLF 102
>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB:
3jwj_A
Length = 217
Score = 41.4 bits (97), Expect = 2e-04
Identities = 21/100 (21%), Positives = 40/100 (40%), Gaps = 8/100 (8%)
Query: 41 NPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEAG--KMVIAVELDSRMVLELQRRF 98
N + +V + ++++G G GNL K LL+ + + V++ R + Q R
Sbjct: 14 NQQRMNGVVAALKQSNARRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERL 73
Query: 99 QSTPYSN----RLKVIQGDVLKTDLPY--FDICVANIPYQ 132
RL++IQG + D + +D +
Sbjct: 74 DRLRLPRNQWERLQLIQGALTYQDKRFHGYDAATVIEVIE 113
>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET:
PGE GOL; 2.00A {Clostridium acetobutylicum}
Length = 209
Score = 41.0 bits (96), Expect = 2e-04
Identities = 14/95 (14%), Positives = 33/95 (34%), Gaps = 9/95 (9%)
Query: 38 ILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLL-EAGKMVIAVELDSRMVLELQR 96
I++ P L + +L+ G G + E G +E+ + + +
Sbjct: 5 IIRQPQLYRFLKYCNESNLDKTVLDCGAGGDLPPLSIFVEDGYKTYGIEISDLQLKKAEN 64
Query: 97 RFQSTPYSNRLKVIQGDVLKTDLPY----FDICVA 127
+ + +L + +GD+ LP+ +
Sbjct: 65 FSRENNF--KLNISKGDI--RKLPFKDESMSFVYS 95
>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine,
structural genomics structure initiative, PSI; HET: SAM;
2.20A {Clostridium thermocellum atcc 27405}
Length = 197
Score = 40.7 bits (95), Expect = 2e-04
Identities = 18/100 (18%), Positives = 38/100 (38%), Gaps = 8/100 (8%)
Query: 39 LKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEA----GKMVIAVELDSRMVLEL 94
+KN L K +K D +++ G GN T L G+ V ++ + +
Sbjct: 5 IKNSLGQSHDYIKMFVKEGDTVVDATCGNGNDTAFLASLVGENGR-VFGFDIQDKAIANT 63
Query: 95 QRRFQSTPYSNRLKVIQG---DVLKTDLPYFDICVANIPY 131
++ +R+ +I+ ++ K + N+ Y
Sbjct: 64 TKKLTDLNLIDRVTLIKDGHQNMDKYIDCPVKAVMFNLGY 103
>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans
agrobacterium tumefaciens, structural genomics, PSI-2;
HET: SAH; 1.95A {Agrobacterium tumefaciens str}
Length = 259
Score = 41.0 bits (96), Expect = 3e-04
Identities = 13/89 (14%), Positives = 31/89 (34%), Gaps = 13/89 (14%)
Query: 45 VESIVQKAGIKSTDVILEIGPGTGNLTKKLLEA--GKMVIAVELDSRMVLELQRRFQSTP 102
++ + ++ ++G G GN T+ L + ++ ++ D M+ + R
Sbjct: 22 ARDLLAQVPLERVLNGYDLGCGPGNSTELLTDRYGVNVITGIDSDDDMLEKAADRL---- 77
Query: 103 YSNRLKVIQGDVLKTDLPY---FDICVAN 128
+ D+ D+ AN
Sbjct: 78 --PNTNFGKADL--ATWKPAQKADLLYAN 102
>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein
structure initiative; 2.46A {Archaeoglobus fulgidus}
Length = 240
Score = 40.7 bits (95), Expect = 3e-04
Identities = 14/79 (17%), Positives = 29/79 (36%), Gaps = 13/79 (16%)
Query: 54 IKSTDVILEIGPGTGNLTKKLLEAGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGD 113
K +L+IG G G + E G I V+++ M+ + + V++ D
Sbjct: 39 FKGCRRVLDIGCGRGEFLELCKEEGIESIGVDINEDMIKFCEG---------KFNVVKSD 89
Query: 114 VLKTDLPY----FDICVAN 128
++ D + +
Sbjct: 90 AIEYLKSLPDKYLDGVMIS 108
>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI,
protein structure initiative, joint center for structu
genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13
Length = 277
Score = 40.8 bits (95), Expect = 4e-04
Identities = 18/93 (19%), Positives = 29/93 (31%), Gaps = 4/93 (4%)
Query: 42 PLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEA---GKMVIAVELDSRMVLELQRRF 98
P I +K D I++ G G+G + L A V A E +
Sbjct: 98 PKDSSFIAMMLDVKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNL 157
Query: 99 QSTPYSNRLKVIQGDV-LKTDLPYFDICVANIP 130
R+ + D+ D D ++P
Sbjct: 158 TKWGLIERVTIKVRDISEGFDEKDVDALFLDVP 190
>3kr9_A SAM-dependent methyltransferase; class I rossmann-like
methyltransferase fold; 2.00A {Streptococcus pneumoniae}
PDB: 3ku1_A*
Length = 225
Score = 40.6 bits (95), Expect = 4e-04
Identities = 13/78 (16%), Positives = 30/78 (38%), Gaps = 2/78 (2%)
Query: 54 IKSTDVILEIGPGTGNLTKKLLEAGK--MVIAVELDSRMVLELQRRFQSTPYSNRLKVIQ 111
+ ++L++G L +L+E G+ IA E+ + ++ +++V
Sbjct: 13 VSQGAILLDVGSDHAYLPIELVERGQIKSAIAGEVVEGPYQSAVKNVEAHGLKEKIQVRL 72
Query: 112 GDVLKTDLPYFDICVANI 129
+ L + V I
Sbjct: 73 ANGLAAFEETDQVSVITI 90
>1ve3_A Hypothetical protein PH0226; dimer, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, unknown function, NPPSFA; HET: SAM; 2.10A
{Pyrococcus horikoshii} SCOP: c.66.1.43
Length = 227
Score = 40.3 bits (94), Expect = 4e-04
Identities = 16/76 (21%), Positives = 32/76 (42%), Gaps = 4/76 (5%)
Query: 51 KAGIKSTDVILEIGPGTGNLTKKLLEAGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVI 110
+K +L++ G G + L + G V+ V++ M+ + + +S + ++ I
Sbjct: 33 MKYMKKRGKVLDLACGVGGFSFLLEDYGFEVVGVDISEDMIRKAREYAKS--RESNVEFI 90
Query: 111 QGDVLKTDLP--YFDI 124
GD K FD
Sbjct: 91 VGDARKLSFEDKTFDY 106
>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics,
midwest cente structural genomics, protein structure
initiative; 1.95A {Streptococcus thermophilus} PDB:
3lby_A*
Length = 185
Score = 39.5 bits (92), Expect = 6e-04
Identities = 12/70 (17%), Positives = 27/70 (38%)
Query: 36 QHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEAGKMVIAVELDSRMVLELQ 95
++K P+ + + ++++ G GN T L K V A ++ + + +
Sbjct: 2 NAMIKRPIHMSHDFLAEVLDDESIVVDATMGNGNDTAFLAGLSKKVYAFDVQEQALGKTS 61
Query: 96 RRFQSTPYSN 105
+R N
Sbjct: 62 QRLSDLGIEN 71
>3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase,
usnRNA, snoRNA, telomerase, cytoplasm,
methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo
sapiens} PDB: 3egi_A*
Length = 241
Score = 40.0 bits (93), Expect = 6e-04
Identities = 16/81 (19%), Positives = 35/81 (43%), Gaps = 1/81 (1%)
Query: 52 AGIKSTDVILEIGPGTGNLTKKLLEAGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQ 111
+ DV+++ G G T + G VIA+++D + + + +++++ I
Sbjct: 74 SQSFKCDVVVDAFCGVGGNTIQFALTGMRVIAIDIDPVKIALARNNAEVYGIADKIEFIC 133
Query: 112 GDVLK-TDLPYFDICVANIPY 131
GD L D+ + P+
Sbjct: 134 GDFLLLASFLKADVVFLSPPW 154
>2fyt_A Protein arginine N-methyltransferase 3; structural genomics,
structural genomics consortium, SGC; HET: SAH; 2.00A
{Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A*
Length = 340
Score = 40.0 bits (93), Expect = 7e-04
Identities = 21/87 (24%), Positives = 42/87 (48%), Gaps = 4/87 (4%)
Query: 46 ESIVQKAGIKSTDVILEIGPGTGNLTKKLLEAG-KMVIAVELDSRMVLELQRRFQSTPYS 104
+ I Q I V+L++G GTG L+ +AG K V+ V+ S ++ + +
Sbjct: 54 DFIYQNPHIFKDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQ-SEILYQAMDIIRLNKLE 112
Query: 105 NRLKVIQGDVLKTDLPY--FDICVANI 129
+ + +I+G + + LP D+ ++
Sbjct: 113 DTITLIKGKIEEVHLPVEKVDVIISEW 139
>1vlm_A SAM-dependent methyltransferase; possible histamine
methyltransferase, structural genomics, JCSG, protein
struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP:
c.66.1.41
Length = 219
Score = 39.4 bits (92), Expect = 7e-04
Identities = 20/81 (24%), Positives = 29/81 (35%), Gaps = 18/81 (22%)
Query: 52 AGIKSTDVILEIGPGTGNLTKKLLEAGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQ 111
+ +EIG GTG L I VE RM E+ R+ + V++
Sbjct: 43 KCLLPEGRGVEIGVGTGRFAVPLKI----KIGVEPSERM-AEIARK-------RGVFVLK 90
Query: 112 GDVLKTDLPY----FDICVAN 128
G +LP FD +
Sbjct: 91 GTA--ENLPLKDESFDFALMV 109
>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A
{Lechevalieria aerocolonigenes}
Length = 273
Score = 39.4 bits (92), Expect = 0.001
Identities = 21/89 (23%), Positives = 37/89 (41%), Gaps = 7/89 (7%)
Query: 44 LVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEA-GKMVIAVELDSRMVLELQRRFQSTP 102
L + ++ ++S D +L++G G G +L A V + + V + R +
Sbjct: 49 LTDEMIALLDVRSGDRVLDVGCGIGKPAVRLATARDVRVTGISISRPQVNQANARATAAG 108
Query: 103 YSNRLKVIQGDVLKTDLPY----FDICVA 127
+NR+ D DLP+ FD A
Sbjct: 109 LANRVTFSYADA--MDLPFEDASFDAVWA 135
>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues,
protein repair, deamidation, post-translational
modification; HET: SAH; 1.80A {Thermotoga maritima}
SCOP: c.66.1.7 d.197.1.1
Length = 317
Score = 39.3 bits (92), Expect = 0.001
Identities = 17/89 (19%), Positives = 36/89 (40%), Gaps = 5/89 (5%)
Query: 28 ISFHKSKGQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLT---KKLLEAGKMVIAV 84
+ + P L+ ++ G+ +LEIG GTG +++ +V++V
Sbjct: 48 SYDDGEEYSTSSQ-PSLMALFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSV 106
Query: 85 ELDSRMVLELQRRFQSTPYSNRLKVIQGD 113
E ++ +R + N + + GD
Sbjct: 107 EYSRKICEIAKRNVERLGIEN-VIFVCGD 134
>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A
{Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A*
3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*
Length = 266
Score = 39.4 bits (92), Expect = 0.001
Identities = 17/86 (19%), Positives = 34/86 (39%), Gaps = 6/86 (6%)
Query: 45 VESIVQKAGIKSTDVILEIGPGTGNLTKKLLEA-GKMVIAVELDSRMVLELQRRFQSTPY 103
+ I+ + +L+IG G G + E G +++ S +V R
Sbjct: 44 TKKILSDIELNENSKVLDIGSGLGGGCMYINEKYGAHTHGIDICSNIVNMANER---VSG 100
Query: 104 SNRLKVIQGDVLKTDLP--YFDICVA 127
+N++ D+L + P FD+ +
Sbjct: 101 NNKIIFEANDILTKEFPENNFDLIYS 126
>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure
initiative dependent methyltransferase; HET: SAI; 1.94A
{Leishmania major} SCOP: c.66.1.42
Length = 254
Score = 39.3 bits (91), Expect = 0.001
Identities = 19/72 (26%), Positives = 27/72 (37%), Gaps = 6/72 (8%)
Query: 60 ILEIGPGTGNLTKKLLEAGKM-VIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTD 118
L+ G G G +TK LL +E M+ E +R P K I +
Sbjct: 97 ALDCGAGIGRITKNLLTKLYATTDLLEPVKHMLEEAKRELAGMP---VGKFILASMETAT 153
Query: 119 LP--YFDICVAN 128
LP +D+ V
Sbjct: 154 LPPNTYDLIVIQ 165
>3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold,
beta-barrel, symmetric arginine dimethylase, SAM
binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB:
3ua4_A
Length = 745
Score = 40.0 bits (92), Expect = 0.001
Identities = 18/98 (18%), Positives = 36/98 (36%), Gaps = 16/98 (16%)
Query: 55 KSTDVILEIGPGTGNLTKKLLEAGK---------------MVIAVELDSRMVLELQRRFQ 99
+ T VI +G G G + K+L++ + + VE + ++ L+
Sbjct: 408 RKTVVIYLLGGGRGPIGTKILKSEREYNNTFRQGQESLKVKLYIVEKNPNAIVTLKYMNV 467
Query: 100 STPYSNRLKVIQGDVLKTDLPYFDICVANIPYQISSPL 137
T + R+ +I+ D+ D +S L
Sbjct: 468 RT-WKRRVTIIESDMRSLPGIAKDRGFEQPDIIVSELL 504
>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint
center for structural genomics, JCSG; HET: SAH; 2.11A
{Anabaena variabilis atcc 29413}
Length = 245
Score = 38.9 bits (90), Expect = 0.001
Identities = 11/69 (15%), Positives = 23/69 (33%), Gaps = 2/69 (2%)
Query: 60 ILEIGPGTGNLTKKLLEAGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQ--GDVLKT 117
+++ G G TK L + VI +++ + + + S RL +
Sbjct: 60 LIDFACGNGTQTKFLSQFFPRVIGLDVSKSALEIAAKENTAANISYRLLDGLVPEQAAQI 119
Query: 118 DLPYFDICV 126
D +
Sbjct: 120 HSEIGDANI 128
>1vbf_A 231AA long hypothetical protein-L-isoaspartate O-
methyltransferase; trimeric coiled coil assembly; 2.80A
{Sulfolobus tokodaii} SCOP: c.66.1.7
Length = 231
Score = 38.8 bits (91), Expect = 0.001
Identities = 19/79 (24%), Positives = 34/79 (43%), Gaps = 4/79 (5%)
Query: 35 GQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEAGKMVIAVELDSRMVLEL 94
G + L ++ + + +LEIG G G T + E V++VE++ +M
Sbjct: 50 GINTTA-LNLGIFMLDELDLHKGQKVLEIGTGIGYYTALIAEIVDKVVSVEINEKMYNYA 108
Query: 95 QRRFQSTPYSNRLKVIQGD 113
+ N +K+I GD
Sbjct: 109 SKLLSY---YNNIKLILGD 124
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 39.6 bits (92), Expect = 0.001
Identities = 19/105 (18%), Positives = 34/105 (32%), Gaps = 35/105 (33%)
Query: 21 QGLGAGGISFHKSKGQHILKNPL---------------LVESIVQ----------KAGIK 55
+ L +SF+ ++ P+ + E IV
Sbjct: 441 KDLVKNNVSFNAKD----IQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQF 496
Query: 56 STDVILEIGPGT----GNLTKKLLEA-G-KMVIAVELDSRMVLEL 94
IL+ GPG G LT + + G ++++A LD +
Sbjct: 497 KATHILDFGPGGASGLGVLTHRNKDGTGVRVIVAGTLDINPDDDY 541
Score = 37.7 bits (87), Expect = 0.007
Identities = 23/158 (14%), Positives = 43/158 (27%), Gaps = 51/158 (32%)
Query: 149 RCAIIMFQKEFAMRLVAQPGDKLYCRLSVNT-----------QLHARVSHLLKVGKNNFR 197
+ + + + L G ++ L VN L+ L K +
Sbjct: 346 QEQVQDYVNKTNSHL--PAGKQVEISL-VNGAKNLVVSGPPQSLYGLNLTLRKA-----K 397
Query: 198 PPPKVDSSVVRIEPRKPRPQVNPVEWDGFLRICFIRKNKTL---SSIFRLKNVLSMLEKN 254
P +D S + RK + FL + S + L ++
Sbjct: 398 APSGLDQSRIPFSERKLKFSNR------FLPV-------ASPFHSHL--LVPASDLI--- 439
Query: 255 YRTLQALQSS----QNSSLG----NTEIGTDTPSLGDS 284
+ L + + +T G+D L S
Sbjct: 440 ---NKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGS 474
Score = 36.2 bits (83), Expect = 0.018
Identities = 26/152 (17%), Positives = 42/152 (27%), Gaps = 62/152 (40%)
Query: 80 MVIA---VELDSRMVLELQRRF------QS-TPYSNRLKVIQGDVLKTDLPYFDICVANI 129
+V++ L + L L++ QS P+S R LP
Sbjct: 377 LVVSGPPQSLY-GLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRF----LP--------- 422
Query: 130 PYQISSPLTFKLLFHQPAFRCAIIMFQKEFAMRLVAQPGDKL----Y------------- 172
++SP FH A + K+ V+ + Y
Sbjct: 423 ---VASP------FHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSG 473
Query: 173 ----------CRLSVN--TQLHARVSHLLKVG 192
RL V T + +H+L G
Sbjct: 474 SISERIVDCIIRLPVKWETTTQFKATHILDFG 505
Score = 35.0 bits (80), Expect = 0.038
Identities = 25/124 (20%), Positives = 33/124 (26%), Gaps = 36/124 (29%)
Query: 160 AMR-LVAQPGDKLYCRLSVNTQLHARVSHLLKVGKNNFR---PPPKVDSSVVRIEPRKPR 215
+ R L G L L V T S L + F P P + EP
Sbjct: 5 STRPLTLSHGS-LEHVLLVPTASFFIASQL----QEQFNKILPEP-TEGFAADDEP---- 54
Query: 216 PQVNPVE-WDGFLRICFI--RKNKTLSSIFR--LKNVLSMLEKNYRTLQALQSSQNSSLG 270
P E FL ++ + F L L+ E Y L
Sbjct: 55 --TTPAELVGKFL--GYVSSLVEPSKVGQFDQVLNLCLTEFENCY-------------LE 97
Query: 271 NTEI 274
+I
Sbjct: 98 GNDI 101
>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint
center for structural genomics, JCSG; HET: MSE; 1.90A
{Exiguobacterium sibiricum 255-15}
Length = 243
Score = 38.6 bits (90), Expect = 0.001
Identities = 19/68 (27%), Positives = 28/68 (41%), Gaps = 4/68 (5%)
Query: 60 ILEIGPGTGNLTKKLLEAGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTDL 119
I +IG GTG T LL V V+L M+ Q + T + + D+ + +L
Sbjct: 37 IADIGCGTGTAT-LLLADHYEVTGVDLSEEMLEIAQEKAMET--NRHVDFWVQDMRELEL 93
Query: 120 PY-FDICV 126
P D
Sbjct: 94 PEPVDAIT 101
>1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain,
beta-barrel, mixed alpha-beta, hexamer; 2.90A
{Saccharomyces cerevisiae} SCOP: c.66.1.6
Length = 328
Score = 38.9 bits (90), Expect = 0.002
Identities = 24/121 (19%), Positives = 53/121 (43%), Gaps = 9/121 (7%)
Query: 46 ESIVQKAGIKSTDVILEIGPGTGNLTKKLLEAG-KMVIAVELDSRMVLELQRRFQSTPYS 104
+I+Q + ++L++G GTG L+ + G K VI V++ S ++ + + +S
Sbjct: 28 NAIIQNKDLFKDKIVLDVGCGTGILSMFAAKHGAKHVIGVDM-SSIIEMAKELVELNGFS 86
Query: 105 NRLKVIQGDVLKTDLPYFDICVANIPYQISSPLTFKLLFHQ--PAFRCAIIMFQKEFAMR 162
+++ +++G + LP + IS + + LL+ A + E +
Sbjct: 87 DKITLLRGKLEDVHLP-----FPKVDIIISEWMGYFLLYESMMDTVLYARDHYLVEGGLI 141
Query: 163 L 163
Sbjct: 142 F 142
>2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine
methyltransferase, structural genomics, PSI, protein
structure initiative; HET: SAH; 1.25A {Mus musculus}
PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A*
Length = 252
Score = 38.7 bits (89), Expect = 0.002
Identities = 25/144 (17%), Positives = 48/144 (33%), Gaps = 8/144 (5%)
Query: 25 AGGISFHKSKGQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEAGKMVIAV 84
ISFH+ +G + LL + + +S + G K + G V+ V
Sbjct: 42 TRHISFHQEQG-----HQLLKKHLDTFLKGQSGLRVFFPLCGKAIEMKWFADRGHTVVGV 96
Query: 85 ELDSRMVLELQRRFQSTPYSNRLKVIQG-DVLKTDLPYFDICVANIPYQISSPL-TFKLL 142
E+ + E + L I G V K+ + +I + + F +
Sbjct: 97 EISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSGSISLYCCSIFDLPRANIGKFDRI 156
Query: 143 FHQPAFRCAIIMFQKEFAMRLVAQ 166
+ + A AI + ++
Sbjct: 157 WDRGAL-VAINPGDHDRYADIILS 179
>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI,
tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus}
Length = 258
Score = 38.5 bits (89), Expect = 0.002
Identities = 17/94 (18%), Positives = 36/94 (38%), Gaps = 5/94 (5%)
Query: 42 PLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEAGKM---VIAVELDSRMVLELQRRF 98
P ++V + +LE G G+G LT L A V + E + + +R
Sbjct: 82 PKDASAMVTLLDLAPGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERNV 141
Query: 99 QSTPYSNRLKVIQGDVLKTDLP--YFDICVANIP 130
++ ++ G + + +L +D ++
Sbjct: 142 RAFWQVENVRFHLGKLEEAELEEAAYDGVALDLM 175
>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold,
alpha/beta/alpha sandwich structure, STRU genomics,
NPPSFA; 2.00A {Methanocaldococcus jannaschii}
Length = 215
Score = 37.9 bits (89), Expect = 0.003
Identities = 20/82 (24%), Positives = 37/82 (45%), Gaps = 5/82 (6%)
Query: 35 GQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLT---KKLLEAGKMVIAVELDSRMV 91
GQ I +V + + +K +LEIG G G +++ +V+++E +
Sbjct: 57 GQTISA-IHMVGMMCELLDLKPGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELA 115
Query: 92 LELQRRFQSTPYSNRLKVIQGD 113
+ +R + Y N + VI GD
Sbjct: 116 EKAERTLRKLGYDN-VIVIVGD 136
>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP,
structural genomics, PSI, protein structure initiative;
2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB:
1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A*
Length = 298
Score = 38.2 bits (88), Expect = 0.003
Identities = 15/94 (15%), Positives = 35/94 (37%), Gaps = 1/94 (1%)
Query: 31 HKSKGQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEAG-KMVIAVELDSR 89
+SK +I +++ + + K D +L++G G G K AG V++
Sbjct: 39 QRSKTINIRNANNFIKACLIRLYTKRGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEV 98
Query: 90 MVLELQRRFQSTPYSNRLKVIQGDVLKTDLPYFD 123
+ + + R ++ ++ D +
Sbjct: 99 SINDARVRARNMKRRFKVFFRAQDSYGRHMDLGK 132
>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural
genomics, protein structure initiative, PSI-2; 1.95A
{Galdieria sulphuraria} SCOP: c.66.1.18
Length = 297
Score = 37.9 bits (88), Expect = 0.003
Identities = 11/108 (10%), Positives = 31/108 (28%), Gaps = 6/108 (5%)
Query: 24 GAGGISFHKSKGQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEA-GKMVI 82
++ + L + ++ L++G G G + L+ G +
Sbjct: 53 PVDQDEIREASLRTDE---WLASELAMTGVLQRQAKGLDLGAGYGGAARFLVRKFGVSID 109
Query: 83 AVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTDLP--YFDICVAN 128
+ + + ++ + V G L+ +D +
Sbjct: 110 CLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIPCEDNSYDFIWSQ 157
>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein
structure initiative, northeast structural genomics
consortium, NESG; 2.90A {Escherichia coli} SCOP:
c.66.1.21
Length = 256
Score = 37.8 bits (88), Expect = 0.003
Identities = 15/87 (17%), Positives = 31/87 (35%), Gaps = 6/87 (6%)
Query: 45 VESIVQKAGIKSTDVILEIGPGTGNLTKKLLEA-GKMVIAVELDSRMVLELQRRFQSTPY 103
++ + +K IL++G G+G + G +++ S + +RR +
Sbjct: 25 YATLGRVLRMKPGTRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEELGV 84
Query: 104 SNRLKVIQGDVLKTDLPY---FDICVA 127
S R+ I D D+
Sbjct: 85 SERVHFIHNDA--AGYVANEKCDVAAC 109
>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich,
structural genomics, PSI-2, protein structure
initiative; 2.21A {Corynebacterium diphtheriae}
Length = 178
Score = 37.1 bits (86), Expect = 0.004
Identities = 9/81 (11%), Positives = 22/81 (27%), Gaps = 6/81 (7%)
Query: 48 IVQKAGIKSTDVILEIGPGTGNLTK--KLLEAGKMVIAVELDSRMVLELQRRFQSTPYSN 105
+ K + + +IG G+G++ + E+ + + S+
Sbjct: 17 AISALAPKPHETLWDIGGGSGSIAIEWLRSTPQTTAVCFEISEERRERILSNAINLGVSD 76
Query: 106 RLKVIQGD---VLKTDLPYFD 123
+Q D
Sbjct: 77 -RIAVQQGAPRAFDDVPDNPD 96
>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase
binding, liver cytosol, transferase-transferase
inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus}
PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A*
2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A
1r74_A* 2azt_A*
Length = 293
Score = 37.7 bits (87), Expect = 0.004
Identities = 11/47 (23%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
Query: 45 VESIVQKAGIKSTDVILEIGPGTGNLTKKLLEAGKMVIAVELDSRMV 91
+ ++++ G +L++ GTG + L+E G V +V+ +M+
Sbjct: 49 LLGLLRQHGCHR---VLDVACGTGVDSIMLVEEGFSVTSVDASDKML 92
>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin
metabolism, S-adenosyl-methionine; 1.80A {Geobacter
metallireducens}
Length = 204
Score = 37.2 bits (86), Expect = 0.004
Identities = 14/98 (14%), Positives = 39/98 (39%), Gaps = 6/98 (6%)
Query: 35 GQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEAGKM--VIAVELDSRMVL 92
+ I K + + K ++ V+ +IG G+ +++ + + A+E + + +
Sbjct: 20 KKLITKQEVRA-VTLSKLRLQDDLVMWDIGAGSASVSIEASNLMPNGRIFALERNPQYLG 78
Query: 93 ELQRRFQSTPYSNRLKVIQGDVLKT--DLPYFDICVAN 128
++ + N + +++ + DLP D
Sbjct: 79 FIRDNLKKFVARN-VTLVEAFAPEGLDDLPDPDRVFIG 115
>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural
genomics, SGC, structural genomics consortium; HET: SAH;
1.75A {Homo sapiens} SCOP: c.66.1.42
Length = 241
Score = 36.6 bits (84), Expect = 0.007
Identities = 14/91 (15%), Positives = 29/91 (31%), Gaps = 4/91 (4%)
Query: 41 NPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLL-EAGKMVIAVELDSRMVLELQRRFQ 99
L + + T L+ G G G +TK+LL + V V++ +++ +
Sbjct: 64 RKFLQRFLREGPNKTGTSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLG 123
Query: 100 STPYSNRLKVIQGDVLKTDLP--YFDICVAN 128
R + +D+
Sbjct: 124 EEGKRVR-NYFCCGLQDFTPEPDSYDVIWIQ 153
>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann
methyltransferase, protein repair isomerization; HET:
SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB:
1jg2_A* 1jg3_A* 1jg4_A*
Length = 235
Score = 36.5 bits (85), Expect = 0.008
Identities = 22/80 (27%), Positives = 36/80 (45%), Gaps = 3/80 (3%)
Query: 35 GQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLE-AGKMVIAVELDSRMVLE 93
GQ + P +V +++ A +K ILE+G G+G + E V +E +V
Sbjct: 71 GQTVSA-PHMVAIMLEIANLKPGMNILEVGTGSGWNAALISEIVKTDVYTIERIPELVEF 129
Query: 94 LQRRFQSTPYSNRLKVIQGD 113
+R + N + VI GD
Sbjct: 130 AKRNLERAGVKN-VHVILGD 148
>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum}
PDB: 3jwi_A
Length = 219
Score = 36.5 bits (84), Expect = 0.008
Identities = 15/92 (16%), Positives = 37/92 (40%), Gaps = 11/92 (11%)
Query: 45 VESIVQKAGIKSTDVILEIGPGTGNLTKKLLEAG--KMVIAVELDSRMVLELQRRFQSTP 102
V ++++ K ++++G G GNL LL+ + + V++ ++ + R +
Sbjct: 21 VVAVLKSVNAKK---VIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERAKDRLKIDR 77
Query: 103 YS----NRLKVIQGDVLKTD--LPYFDICVAN 128
R+ + Q ++ D +D
Sbjct: 78 LPEMQRKRISLFQSSLVYRDKRFSGYDAATVI 109
>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET:
SAH; 3.10A {Arabidopsis thaliana}
Length = 950
Score = 37.1 bits (85), Expect = 0.010
Identities = 11/82 (13%), Positives = 31/82 (37%), Gaps = 6/82 (7%)
Query: 45 VESIVQKAGIKSTDVILEIGPGTGNLTKKLLEAG---KMVIAVELDSRMVLELQRRFQST 101
++++ + +++ G G+G+L LL+ + +I V++ + + +
Sbjct: 713 ALKHIRESSAST---LVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVK 769
Query: 102 PYSNRLKVIQGDVLKTDLPYFD 123
V + + FD
Sbjct: 770 LNKEACNVKSATLYDGSILEFD 791
>3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase,
methyltransferase, methylation, trans
activator-transferase complex; HET: SAM; 2.00A
{Encephalitozoon cuniculi}
Length = 170
Score = 35.1 bits (81), Expect = 0.013
Identities = 19/96 (19%), Positives = 43/96 (44%), Gaps = 16/96 (16%)
Query: 43 LLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEAGKMVIAVELDSRMVLELQRRFQSTP 102
L++++ ++ ++L++G TG +T++L + V++ +L + LE R
Sbjct: 12 TLMDALEREG--LEMKIVLDLGTSTGVITEQLRKRNT-VVSTDL-NIRALESHRGGNL-- 65
Query: 103 YSNRLKVIQGDVLKTDLPY--FDICVANIPYQISSP 136
++ D+L + D+ V N PY +
Sbjct: 66 -------VRADLL-CSINQESVDVVVFNPPYVPDTD 93
>3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural
genomics, PSI-2, protein structure initiative; 1.50A
{Listeria monocytogenes str}
Length = 244
Score = 35.6 bits (82), Expect = 0.014
Identities = 13/65 (20%), Positives = 27/65 (41%), Gaps = 2/65 (3%)
Query: 54 IKSTDVILEIGPGTGNLTKKLLEAGK--MVIAVELDSRMVLELQRRFQSTPYSNRLKVIQ 111
I + I +IG L ++ IA E+ Q++ +S+ + ++ V +
Sbjct: 19 ITKNERIADIGSDHAYLPCFAVKNQTASFAIAGEVVDGPFQSAQKQVRSSGLTEQIDVRK 78
Query: 112 GDVLK 116
G+ L
Sbjct: 79 GNGLA 83
>3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics,
midwest CENT structural genomics, protein structure
initiative; 1.80A {Streptococcus agalactiae}
Length = 230
Score = 35.6 bits (82), Expect = 0.014
Identities = 11/65 (16%), Positives = 24/65 (36%), Gaps = 2/65 (3%)
Query: 54 IKSTDVILEIGPGTGNLTKKLLEAGK--MVIAVELDSRMVLELQRRFQSTPYSNRLKVIQ 111
+ +L++G L LL+ G IA E+ + + ++++ V
Sbjct: 19 VPKGARLLDVGSDHAYLPIFLLQMGYCDFAIAGEVVNGPYQSALKNVSEHGLTSKIDVRL 78
Query: 112 GDVLK 116
+ L
Sbjct: 79 ANGLS 83
>2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for
structural genomics, J protein structure initiative,
PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes}
SCOP: c.66.1.45
Length = 344
Score = 35.8 bits (83), Expect = 0.016
Identities = 18/106 (16%), Positives = 37/106 (34%), Gaps = 28/106 (26%)
Query: 43 LLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEAGK----------MVIAVELD----- 87
++ + + K IL+ GT NL L V++D
Sbjct: 117 IVAYLLEKVIQKKKNVSILDPACGTANL---LTTVINQLELKGDVDVHASGVDVDDLLIS 173
Query: 88 -SRMVLELQRRFQSTPYSNRLKVIQGDVLKTDLP-YFDICVANIPY 131
+ + +LQR ++ ++ D L L D+ ++++P
Sbjct: 174 LALVGADLQR--------QKMTLLHQDGLANLLVDPVDVVISDLPV 211
>3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein
structure initiative; HET: MSE; 1.47A {Corynebacterium
glutamicum atcc 13032}
Length = 317
Score = 35.7 bits (82), Expect = 0.016
Identities = 13/56 (23%), Positives = 22/56 (39%), Gaps = 3/56 (5%)
Query: 60 ILEIGPGTGNLTKKLLE--AGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGD 113
I +G G + + + VELD + L R + P + R+K+ D
Sbjct: 93 ITHLGGGACTMARYFADVYPQSRNTVVELD-AELARLSREWFDIPRAPRVKIRVDD 147
>1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM
MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB:
1nv9_A* 1vq1_A* 1sg9_A*
Length = 284
Score = 35.6 bits (83), Expect = 0.019
Identities = 20/94 (21%), Positives = 42/94 (44%), Gaps = 6/94 (6%)
Query: 43 LLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEAGK-MVIAVELDSRMVLELQRR-FQS 100
LVE ++ + +IG G+G + + + +V A ++ S +E+ R+ +
Sbjct: 110 ELVELALELIRKYGIKTVADIGTGSGAIGVSVAKFSDAIVFATDV-SSKAVEIARKNAER 168
Query: 101 TPYSNRLKVIQGDV---LKTDLPYFDICVANIPY 131
S+R V +G+ K ++ ++N PY
Sbjct: 169 HGVSDRFFVRKGEFLEPFKEKFASIEMILSNPPY 202
>4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA
PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A*
Length = 375
Score = 34.7 bits (79), Expect = 0.037
Identities = 13/93 (13%), Positives = 32/93 (34%), Gaps = 12/93 (12%)
Query: 54 IKSTDVILEIGPGTGNLTKKLLEAGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGD 113
+ + +++G G T +L++ V +V+ + + T ++ ++ D
Sbjct: 209 LANGMWAVDLGACPGGWTYQLVKRNMWVYSVDN-----GPMAQSLMDTG---QVTWLRED 260
Query: 114 VLKTDLPYFDI----CVANIPYQISSPLTFKLL 142
K +I C + L + L
Sbjct: 261 GFKFRPTRSNISWMVCDMVEKPAKVAALMAQWL 293
>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics
consortium (NESG), PSI-2, protein structure initiative,
unknown function; NMR {Synechocystis} PDB: 3mer_A
Length = 202
Score = 34.1 bits (78), Expect = 0.045
Identities = 19/93 (20%), Positives = 35/93 (37%), Gaps = 8/93 (8%)
Query: 41 NPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEAGKMVIAVELDSRMVLELQRRFQS 100
N LV Q K IL + G G L G V AV+ S + + ++ Q
Sbjct: 18 NDFLVSVANQIPQGK----ILCLAEGEGRNACFLASLGYEVTAVDQSSVGLAKAKQLAQE 73
Query: 101 TPYSNRLKVIQGDVLKTDLP--YFDICVANIPY 131
++ +Q ++ D+ ++ V+ +
Sbjct: 74 K--GVKITTVQSNLADFDIVADAWEGIVSIFCH 104
>3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic
resistance, aminoglycoside, S-adenosyl-L-methionine;
HET: SAH; 1.69A {Streptomyces SP}
Length = 218
Score = 33.9 bits (77), Expect = 0.045
Identities = 21/124 (16%), Positives = 41/124 (33%), Gaps = 20/124 (16%)
Query: 58 DVILEIGPGTGNLTKKLLEA--GKMVIAVELDSRMVLELQRRFQSTPYSNRLK---VIQG 112
DV+L++G G G K+ ++V+A++ D + ++ + + P L +
Sbjct: 29 DVVLDVGTGDGKHPYKVARQNPSRLVVALDADKSRMEKISAKAAAKPAKGGLPNLLYLWA 88
Query: 113 DVLKTDLPYFDICVANIPYQISSPLTFKLLFHQPAFRCAIIMFQKEF--AMRLVAQPGDK 170
LP S +L + ++ E M V +PG
Sbjct: 89 TA--ERLPPL-----------SGVGELHVLMPWGSLLRGVLGSSPEMLRGMAAVCRPGAS 135
Query: 171 LYCR 174
Sbjct: 136 FLVA 139
>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance,
transferase; HET: SAH; 1.48A {Escherichia coli} PDB:
2xva_A* 4dq0_A* 2i6g_A*
Length = 199
Score = 34.0 bits (78), Expect = 0.046
Identities = 22/124 (17%), Positives = 45/124 (36%), Gaps = 21/124 (16%)
Query: 60 ILEIGPGTGNLTKKLLEAGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTDL 119
L++G G G + L G V A + ++ + ++R N L D+ +L
Sbjct: 36 TLDLGCGNGRNSLYLAANGYDVDAWDKNAMSIANVERIKSIENLDN-LHTRVVDL--NNL 92
Query: 120 PY---FDICVANIPYQISSPLTFKLLFHQPAFRCAIIMFQKEFAMRLVAQPGDKLYCRLS 176
+ +D ++ T L+F + +I M+ +PG +
Sbjct: 93 TFDRQYDFILS----------TVVLMFLEAKTIPGLIA-----NMQRCTKPGGYNLIVAA 137
Query: 177 VNTQ 180
++T
Sbjct: 138 MDTA 141
>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for
structural genomics, JCSG, protein structure initiative
transferase; 1.90A {Geobacter sulfurreducens pca}
Length = 210
Score = 33.7 bits (78), Expect = 0.059
Identities = 14/85 (16%), Positives = 31/85 (36%), Gaps = 12/85 (14%)
Query: 48 IVQKAGIKSTDVILEIGPGTG----NLTKKLLEAGKMVIAVELDSRMVLELQRR-FQSTP 102
+ + + ++ G G G + + + + V+ ++ D +E RR
Sbjct: 51 LARIKQPQL---VVVPGDGLGCASWWFARAISISSR-VVMIDPDRDN-VEHARRMLHDNG 105
Query: 103 YSNRLKVIQGDVLKT--DLPYFDIC 125
+R+++ GD L DI
Sbjct: 106 LIDRVELQVGDPLGIAAGQRDIDIL 130
>3ll7_A Putative methyltransferase; methytransferase, structural genomics,
MCSG, PSI-2, protein initiative; HET: MSE; 1.80A
{Porphyromonas gingivalis}
Length = 410
Score = 34.0 bits (77), Expect = 0.067
Identities = 9/88 (10%), Positives = 26/88 (29%), Gaps = 5/88 (5%)
Query: 54 IKSTDVILEIGPGTGNLTKKLLEAGKMVIAVELDSRMVLELQRRFQSTPY-SNRLKVIQG 112
I+ ++++ G G L+ I +E + + + + ++ G
Sbjct: 91 IREGTKVVDLTGGLGIDFIALMSKASQGIYIERNDETAVAARHNIPLLLNEGKDVNILTG 150
Query: 113 DVL----KTDLPYFDICVANIPYQISSP 136
D + D + + +
Sbjct: 151 DFKEYLPLIKTFHPDYIYVDPARRSGAD 178
>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold,
protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo
sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A*
2aox_A* 1jqe_A* 2aow_A*
Length = 292
Score = 33.5 bits (76), Expect = 0.073
Identities = 11/58 (18%), Positives = 19/58 (32%), Gaps = 8/58 (13%)
Query: 60 ILEIGPGTGNLTKKLLEA--------GKMVIAVELDSRMVLELQRRFQSTPYSNRLKV 109
IL IG G G + ++L VE + + + + T +K
Sbjct: 56 ILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTSNLENVKF 113
>3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics,
tubercidin, structu genomics, structural genomics
consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB:
4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A*
3qow_A* 3qox_A* 4er3_A* 3sr4_A*
Length = 438
Score = 33.7 bits (76), Expect = 0.082
Identities = 14/88 (15%), Positives = 33/88 (37%), Gaps = 10/88 (11%)
Query: 41 NPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKL-LEAG-KMVIAVELD-------SRMV 91
+ LV ++ + + D+ +++G G G + ++ K VE M
Sbjct: 158 SFDLVAQMIDEIKMTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMD 217
Query: 92 LELQRRFQSTPYSN-RLKVIQGDVLKTD 118
E ++ + + + +GD L +
Sbjct: 218 REFRKWMKWYGKKHAEYTLERGDFLSEE 245
>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S
rRNA, NESG, structural genomics, PSI, protein structure
initiative; HET: SAM; 2.80A {Escherichia coli} SCOP:
c.66.1.33
Length = 269
Score = 33.0 bits (75), Expect = 0.10
Identities = 12/87 (13%), Positives = 30/87 (34%), Gaps = 10/87 (11%)
Query: 45 VESIVQKAGIKSTDVILEIGPGTGNLTKKLLEAGK--MVIAVELDSRMVLELQRRFQSTP 102
+ + +++ +L+IG G G T +A +++ + +R+
Sbjct: 74 IVAQLRERLDDKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRY---- 129
Query: 103 YSNRLKVIQGDVLKTDLPYFDICVANI 129
++ LP+ D + I
Sbjct: 130 --PQVTFCVASS--HRLPFSDTSMDAI 152
>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural
genomics, protein structure initiative, pyrococc
furiosus, PSI-2; 2.20A {Pyrococcus furiosus}
Length = 230
Score = 32.9 bits (76), Expect = 0.12
Identities = 24/97 (24%), Positives = 37/97 (38%), Gaps = 10/97 (10%)
Query: 46 ESIVQKAGIKSTDVILEIGPGTG----NLTKKLLEAGKMVIAVELDSRMVLELQRR-FQS 100
I K ++ +V LEIG G + +K V A E+ E RR +
Sbjct: 45 RYIFLKTFLRGGEVALEIGTGHTAMMALMAEKFFNC--KVTATEV-DEEFFEYARRNIER 101
Query: 101 TPYSNRLKVIQGDVLKTDLPY-FDICVANIPYQISSP 136
+ RL G ++K + FD+ + PY P
Sbjct: 102 NNSNVRLVKSNGGIIKGVVEGTFDVIFSAPPY-YDKP 137
>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural
genomics, protein structure initiative; HET: SAM; 1.98A
{Mycobacterium tuberculosis} SCOP: c.66.1.13
Length = 280
Score = 32.8 bits (74), Expect = 0.14
Identities = 22/90 (24%), Positives = 34/90 (37%), Gaps = 7/90 (7%)
Query: 48 IVQKAGIKSTDVILEIGPGTGNLTKKLLEA---GKMVIAVELDSRMVLELQRRFQSTPYS 104
IV + I +LE G G+G LT LL A VI+ E + +R
Sbjct: 91 IVHEGDIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQ 150
Query: 105 NRLKV--IQGDVLKTDLP--YFDICVANIP 130
+ D+ ++LP D V ++
Sbjct: 151 PPDNWRLVVSDLADSELPDGSVDRAVLDML 180
>1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine,
drug metabolism; NMR {Pseudomonas syringae PV} SCOP:
c.66.1.36
Length = 203
Score = 32.1 bits (72), Expect = 0.20
Identities = 13/73 (17%), Positives = 19/73 (26%), Gaps = 6/73 (8%)
Query: 30 FHKSKGQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEAGKMVIAVELDSR 89
H+S+ N L + + +L G L G V+ EL
Sbjct: 2 SHQSEV-----NKDLQQYW-SSLNVVPGARVLVPLCGKSQDMSWLSGQGYHVVGAELSEA 55
Query: 90 MVLELQRRFQSTP 102
V P
Sbjct: 56 AVERYFTERGEQP 68
>3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA
capping, mRNA processing, nucleus, phosphoprotein,
RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A*
Length = 313
Score = 32.2 bits (72), Expect = 0.24
Identities = 40/278 (14%), Positives = 80/278 (28%), Gaps = 32/278 (11%)
Query: 51 KAGIKSTDVILEIGPGTGNLTKKLLEAG-KMVIAVELDSRMVLELQRRFQS------TPY 103
+ K +L++G G G K + ++ ++ V + Q+R++ + Y
Sbjct: 29 RQKKKRDITVLDLGCGKGGDLLKWKKGRINKLVCTDIADVSVKQCQQRYEDMKNRRDSEY 88
Query: 104 SNRLKVIQGDVLKTDLP--------YFDICVAN--IPYQISSPLTFKLLFHQPAFRCAII 153
+ I D K L FDIC Y S ++ R
Sbjct: 89 IFSAEFITADSSKELLIDKFRDPQMCFDICSCQFVCHYSFESYEQADMMLRNACERL--- 145
Query: 154 MFQKEFAMRLVAQPGDKLYCRLSVNTQLHARVSHLLKVGKNNFRPPPKVDSSVVRIEPRK 213
+L RL + + P +E
Sbjct: 146 --SPGGYFIGTTPNSFELIRRLEASETESFGNEIYTVKFQKKGDYPLFGCKYDFNLEGVV 203
Query: 214 PRPQVNPVEWDGFLRIC-----FIRKNKTLSSIF---RLKNVLSMLEKNYRTLQALQSSQ 265
P+ V + + + KT + N ML K + L+ +++
Sbjct: 204 DVPE-FLVYFPLLNEMAKKYNMKLVYKKTFLEFYEEKIKNNENKMLLKRMQALEPYPANE 262
Query: 266 NSSLGNTEIGT-DTPSLGDSNGDQSMGVDDGSDDEMDV 302
+S L + ++ + + N + + S E +
Sbjct: 263 SSKLVSEKVDDYEHAAKYMKNSQVRLPLGTLSKSEWEA 300
>1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone
methyltransferase, nucleosome; HET: SAH; 2.20A
{Saccharomyces cerevisiae} SCOP: c.66.1.31
Length = 433
Score = 32.1 bits (72), Expect = 0.30
Identities = 17/100 (17%), Positives = 37/100 (37%), Gaps = 11/100 (11%)
Query: 41 NPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKL-LEAG-KMVIAVEL-------DSRMV 91
P + + Q+ +K D +++G G GN + LE G + E+
Sbjct: 227 LPNFLSDVYQQCQLKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQY 286
Query: 92 LELQRRFQ--STPYSNRLKVIQGDVLKTDLPYFDICVANI 129
EL++R + +N ++ + + I ++
Sbjct: 287 EELKKRCKLYGMRLNNVEFSLKKSFVDNNRVAELIPQCDV 326
>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase,
transferase; HET: MSE; 1.55A {Staphylococcus aureus}
Length = 232
Score = 31.4 bits (72), Expect = 0.33
Identities = 14/74 (18%), Positives = 36/74 (48%), Gaps = 9/74 (12%)
Query: 48 IVQKAGIKSTDVILEIGPGTG---NLTKKLLEAGKMVIAVELDSRMVLELQRR-FQSTPY 103
+++ +K+ ILEIG G + + V +E + M ++ ++ + +
Sbjct: 66 LIRMNNVKN---ILEIGTAIGYSSMQFASISDDIH-VTTIERNETM-IQYAKQNLATYHF 120
Query: 104 SNRLKVIQGDVLKT 117
N++++I+G+ L+
Sbjct: 121 ENQVRIIEGNALEQ 134
>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117,
NESG, structural genomics, PSI-2, protein structure
initiative; 2.25A {Corynebacterium glutamicum}
Length = 221
Score = 31.5 bits (72), Expect = 0.34
Identities = 8/76 (10%), Positives = 22/76 (28%), Gaps = 11/76 (14%)
Query: 48 IVQKAGIKSTDVILEIGPGTG----NLTKKLLEAGKMVIAVELDSRMVLELQRRF--QST 101
G + I P G + L + + ++ +S + ++
Sbjct: 51 TTNGNGSTG---AIAITPAAGLVGLYILNGLADNTT-LTCIDPESEH-QRQAKALFREAG 105
Query: 102 PYSNRLKVIQGDVLKT 117
+R++ + L
Sbjct: 106 YSPSRVRFLLSRPLDV 121
>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH;
2.30A {Leptospira interrogans}
Length = 239
Score = 31.1 bits (71), Expect = 0.41
Identities = 19/91 (20%), Positives = 34/91 (37%), Gaps = 9/91 (9%)
Query: 60 ILEIGPGTG----NLTKKLLEAGKMVIAVELDSRMVLELQRR-FQSTPYSNRLKVIQGDV 114
I+EIG TG L E GK ++ ++ + R+ ++ N++ + G
Sbjct: 64 IIEIGTFTGYSSLCFASALPEDGK-ILCCDVSEEW-TNVARKYWKENGLENKIFLKLGSA 121
Query: 115 LKT--DLPYFDICVANIPYQISSPLTFKLLF 143
L+T L + P + L F
Sbjct: 122 LETLQVLIDSKSAPSWASDFAFGPSSIDLFF 152
>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH;
1.37A {Mesembryanthemum crystallinum}
Length = 237
Score = 30.7 bits (70), Expect = 0.52
Identities = 11/63 (17%), Positives = 25/63 (39%), Gaps = 7/63 (11%)
Query: 60 ILEIGPGTG----NLTKKLLEAGKMVIAVELDSRMVLELQRR-FQSTPYSNRLKVIQGDV 114
+E+G TG + + GK + A++ D E+ + +++ I+ D
Sbjct: 74 TIEVGVFTGYSLLLTALSIPDDGK-ITAIDFDREAY-EIGLPFIRKAGVEHKINFIESDA 131
Query: 115 LKT 117
+
Sbjct: 132 MLA 134
>1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl
homocysteine, protein repair; HET: SAH; 1.50A {Homo
sapiens} SCOP: c.66.1.7 PDB: 1kr5_A*
Length = 226
Score = 30.6 bits (70), Expect = 0.55
Identities = 12/70 (17%), Positives = 29/70 (41%), Gaps = 7/70 (10%)
Query: 51 KAGIKSTDVILEIGPGTGNLT---KKLLEAGKMVIAVELDSRMVLELQRRFQSTPYS--- 104
+ L++G G+G LT +++ VI ++ +V + + +
Sbjct: 72 FDQLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLS 131
Query: 105 -NRLKVIQGD 113
R++++ GD
Sbjct: 132 SGRVQLVVGD 141
>1lcy_A HTRA2 serine protease; apoptosis, PDZ domain, caspase activation,
binding, hydrolase; 2.00A {Homo sapiens} SCOP: b.36.1.4
b.47.1.1
Length = 325
Score = 31.1 bits (71), Expect = 0.56
Identities = 13/48 (27%), Positives = 25/48 (52%), Gaps = 6/48 (12%)
Query: 50 QKAGIKSTDVILEIGPGTGNLTKKLLEAGKMVIAVELDSRMVLELQRR 97
+AG++ DVIL IG + + A + AV S++ ++++R
Sbjct: 270 HRAGLRPGDVILAIG-E-----QMVQNAEDVYEAVRTQSQLAVQIRRG 311
>2r3s_A Uncharacterized protein; methyltransferase domain, structural
genomics, joint center structural genomics, JCSG,
protein structure initiative; HET: MSE; 2.15A {Nostoc
punctiforme}
Length = 335
Score = 30.8 bits (70), Expect = 0.58
Identities = 11/62 (17%), Positives = 22/62 (35%), Gaps = 1/62 (1%)
Query: 60 ILEIGPGTGNLTKKLLEAGKMVIAVELDSRMVLEL-QRRFQSTPYSNRLKVIQGDVLKTD 118
+L+I G + + +D VLE+ + + ++R I G + D
Sbjct: 169 VLDISASHGLFGIAVAQHNPNAEIFGVDWASVLEVAKENARIQGVASRYHTIAGSAFEVD 228
Query: 119 LP 120
Sbjct: 229 YG 230
>2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural
genomics, PSI-2, protein structure initiative; 1.80A
{Neisseria gonorrhoeae}
Length = 258
Score = 30.5 bits (68), Expect = 0.75
Identities = 12/75 (16%), Positives = 23/75 (30%), Gaps = 7/75 (9%)
Query: 46 ESIVQKAGIKSTDVILEIGPGTGNLTKKLLEAGKMVIAVELDSRMVLELQRRFQSTPYS- 104
E I + + + + G G + L G V A E + L + +
Sbjct: 73 ELIAKAVNHTAHPTVWDATAGLGRDSFVLASLGLTVTAFEQHPAVACLLSDGIRRALLNP 132
Query: 105 ------NRLKVIQGD 113
R+ + G+
Sbjct: 133 ETQDTAARINLHFGN 147
>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM,
structural GEN consortium, SGC, transferase; HET: SAM;
2.50A {Homo sapiens} SCOP: c.66.1.13
Length = 336
Score = 30.5 bits (68), Expect = 0.79
Identities = 19/87 (21%), Positives = 36/87 (41%), Gaps = 3/87 (3%)
Query: 42 PLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEAGKM---VIAVELDSRMVLELQRRF 98
P + I+ I D +LE G G+G ++ L +A VI+ E+ ++ +
Sbjct: 91 PKDINMILSMMDINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNY 150
Query: 99 QSTPYSNRLKVIQGDVLKTDLPYFDIC 125
+ S +L ++ D + DI
Sbjct: 151 KHWRDSWKLSHVEEWPDNVDFIHKDIS 177
>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella
burnetii}
Length = 225
Score = 30.3 bits (69), Expect = 0.79
Identities = 11/63 (17%), Positives = 27/63 (42%), Gaps = 7/63 (11%)
Query: 60 ILEIGPGTG----NLTKKLLEAGKMVIAVELDSRMVLELQRR-FQSTPYSNRLKVIQGDV 114
+++IG TG + L + G +I ++D + L + ++ S+++ +
Sbjct: 68 VIDIGTFTGYSAIAMGLALPKDGT-LITCDVDEKST-ALAKEYWEKAGLSDKIGLRLSPA 125
Query: 115 LKT 117
T
Sbjct: 126 KDT 128
>2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase,
S-adenosyl-L-methionine, RNA metabolism, mRNA
processing, methyltransferase, poxvirus; HET: SAH; 2.70A
{Vaccinia virus}
Length = 302
Score = 30.5 bits (68), Expect = 0.82
Identities = 10/72 (13%), Positives = 25/72 (34%), Gaps = 1/72 (1%)
Query: 50 QKAGIKSTDVILEIGPGTGNLTKKLLEAG-KMVIAVELDSRMVLELQRRFQSTPYSNRLK 108
+ +L I G G +K +++A + D+ + R+ + K
Sbjct: 42 TFLDDSNKRKVLAIDFGNGADLEKYFYGEIALLVATDPDADAIARGNERYNKLNSGIKTK 101
Query: 109 VIQGDVLKTDLP 120
+ D ++ +
Sbjct: 102 YYKFDYIQETIR 113
>2pzd_A Serine protease HTRA2; PDZ domain, apoptosis, mitochondria,
peptid module, hydrolase; 2.75A {Homo sapiens} SCOP:
b.36.1.4
Length = 113
Score = 29.2 bits (66), Expect = 0.83
Identities = 13/47 (27%), Positives = 25/47 (53%), Gaps = 6/47 (12%)
Query: 50 QKAGIKSTDVILEIGPGTGNLTKKLLEAGKMVIAVELDSRMVLELQR 96
+AG++ DVIL IG + + A + AV S++ ++++R
Sbjct: 49 HRAGLRPGDVILAIG------EQMVQNAEDVYEAVRTQSQLAVQIRR 89
>2h00_A Methyltransferase 10 domain containing protein; structural
genomics, structural genomics consortium, SGC; HET: SAH;
2.00A {Homo sapiens} SCOP: c.66.1.54
Length = 254
Score = 30.1 bits (67), Expect = 0.84
Identities = 15/95 (15%), Positives = 35/95 (36%), Gaps = 10/95 (10%)
Query: 51 KAGIKSTDVILEIGPGTGNLTKKLLEA--GKMVIAVELDSRMVLELQRRFQSTPYSNRLK 108
+ + ++IG G + L G +A E+D ++ + S+ +K
Sbjct: 60 DSDKSTLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNLSDLIK 119
Query: 109 VIQ--------GDVLKTDLPYFDICVANIPYQISS 135
V++ + + +D C+ N P+ +
Sbjct: 120 VVKVPQKTLLMDALKEESEIIYDFCMCNPPFFANQ 154
>2p3w_A Probable serine protease HTRA3; PDZ domain, phage derived high
affinity ligand, protein BIND; 1.70A {Homo sapiens}
Length = 112
Score = 29.2 bits (66), Expect = 0.87
Identities = 13/47 (27%), Positives = 30/47 (63%), Gaps = 6/47 (12%)
Query: 50 QKAGIKSTDVILEIGPGTGNLTKKLLEAGKMVIAVELDSRMVLELQR 96
Q+ GI+ D+I+++ G + L+++ ++ AV +S ++LE++R
Sbjct: 49 QRGGIQDGDIIVKVN-G-----RPLVDSSELQEAVLTESPLLLEVRR 89
>1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans;
methyltransferase, isomerization, protein repair,
S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila
melanogaster} SCOP: c.66.1.7
Length = 227
Score = 29.9 bits (68), Expect = 0.88
Identities = 16/75 (21%), Positives = 34/75 (45%), Gaps = 12/75 (16%)
Query: 51 KAGIKSTDVILEIGPGTGNLT--------KKLLEAGKMVIAVELDSRMVLELQRRFQSTP 102
+ +K IL++G G+G LT K ++A ++ +E + +V + +
Sbjct: 79 RDHLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDD 138
Query: 103 Y----SNRLKVIQGD 113
S +L +++GD
Sbjct: 139 RSMLDSGQLLIVEGD 153
>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A
{Synechocystis SP}
Length = 232
Score = 29.9 bits (68), Expect = 1.0
Identities = 14/63 (22%), Positives = 28/63 (44%), Gaps = 7/63 (11%)
Query: 60 ILEIGPGTG----NLTKKLLEAGKMVIAVELDSRMVLELQRR-FQSTPYSNRLKVIQGDV 114
+LEIG G + +L G+ +IA + D + ++ +Q + ++ + G
Sbjct: 76 VLEIGVFRGYSALAMALQLPPDGQ-IIACDQDPNA-TAIAKKYWQKAGVAEKISLRLGPA 133
Query: 115 LKT 117
L T
Sbjct: 134 LAT 136
>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold,
protein-cofactor-substrate complex; HET: SAH FRE; 2.70A
{Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*
Length = 247
Score = 30.0 bits (68), Expect = 1.0
Identities = 13/63 (20%), Positives = 26/63 (41%), Gaps = 7/63 (11%)
Query: 60 ILEIGPGTG----NLTKKLLEAGKMVIAVELDSRMVLELQRR-FQSTPYSNRLKVIQGDV 114
+EIG TG + E GK ++A++++ EL + +++ +G
Sbjct: 83 TMEIGVYTGYSLLATALAIPEDGK-ILAMDINKENY-ELGLPVIKKAGVDHKIDFREGPA 140
Query: 115 LKT 117
L
Sbjct: 141 LPV 143
>2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A
methyltransferase; protein repair, isoaspartyl
formation, P. falciparum; HET: SAH; 2.00A {Plasmodium
falciparum}
Length = 227
Score = 29.9 bits (68), Expect = 1.1
Identities = 11/77 (14%), Positives = 24/77 (31%), Gaps = 11/77 (14%)
Query: 51 KAGIKSTDVILEIGPGTG-------NLTKKLLEAGKMVIAVELDSRMVLELQRRFQSTPY 103
+K +++G G+G L VI +E +V +
Sbjct: 75 INVLKPGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKP 134
Query: 104 S----NRLKVIQGDVLK 116
+ K+I ++ +
Sbjct: 135 ELLKIDNFKIIHKNIYQ 151
>3r3h_A O-methyltransferase, SAM-dependent; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 2.65A {Legionella pneumophila subsp}
Length = 242
Score = 29.6 bits (67), Expect = 1.2
Identities = 14/77 (18%), Positives = 31/77 (40%), Gaps = 8/77 (10%)
Query: 60 ILEIGPGTG----NLTKKLLEAGKMVIAVELDSRMVLELQRR-FQSTPYSNRLKVIQGDV 114
+LE+G TG ++ L + G+ VI +++ + ++ +++K+ G
Sbjct: 64 VLELGTFTGYSALAMSLALPDDGQ-VITCDINEGW-TKHAHPYWREAKQEHKIKLRLGPA 121
Query: 115 LKTDLPYFDICVANIPY 131
L T L +
Sbjct: 122 LDT-LHSLLNEGGEHQF 137
>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer
[decarboxylating]; alpha and beta protein (A/B) class;
HET: MES; 2.30A {Methanocaldococcus jannaschii}
Length = 183
Score = 29.5 bits (67), Expect = 1.2
Identities = 19/88 (21%), Positives = 40/88 (45%), Gaps = 8/88 (9%)
Query: 29 SFHKSKGQHILKNPLLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEAGKMVIAVELDS 88
F + +G I K + SI K + DV++++G G+G +T ++ + K V A++
Sbjct: 9 EFIRREGVPITKEEIRAVSI-GKLNLNKDDVVVDVGCGSGGMTVEIAKRCKFVYAIDYLD 67
Query: 89 ---RMVLELQRRFQSTPYSNRLKVIQGD 113
+ + +F ++I+G
Sbjct: 68 GAIEVTKQNLAKFN----IKNCQIIKGR 91
>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural
genomics, NEW YORK structura genomics research
consortium; 1.88A {Klebsiella pneumoniae subsp}
Length = 248
Score = 29.6 bits (67), Expect = 1.3
Identities = 17/75 (22%), Positives = 34/75 (45%), Gaps = 10/75 (13%)
Query: 48 IVQKAGIKSTDVILEIGPGTG----NLTKKLLEAGKMVIAVELDSRMVLELQRR-FQSTP 102
+V+ K ILEIG G + ++L G+ ++ +E D+ ++ R Q
Sbjct: 58 LVRLTQAKR---ILEIGTLGGYSTIWMARELPADGQ-LLTLEADAHHA-QVARENLQLAG 112
Query: 103 YSNRLKVIQGDVLKT 117
R+ + +G L++
Sbjct: 113 VDQRVTLREGPALQS 127
>3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH;
1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A*
3mte_A*
Length = 225
Score = 29.4 bits (65), Expect = 1.5
Identities = 17/119 (14%), Positives = 37/119 (31%), Gaps = 12/119 (10%)
Query: 58 DVILEIGPGTGNLTKKLLEAG--KMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVL 115
V +++G G G KL I ++ + ++ ++ P L + +
Sbjct: 26 RVHIDLGTGDGRNIYKLAINDQNTFYIGIDPVKENLFDISKKIIKKPSKGGLSNVV--FV 83
Query: 116 KTDLPYFDICVANIPYQISSPLTFKLLFHQPAFRCAIIMFQKEF--AMRLVAQPGDKLY 172
+ NI IS +LF +I ++ + +A+
Sbjct: 84 IAAAESLPFELKNIADSIS------ILFPWGTLLEYVIKPNRDILSNVADLAKKEAHFE 136
>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll,
BCHU, SAM, SAH, adenosylmethyonine,
S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium
tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A*
Length = 359
Score = 29.7 bits (67), Expect = 1.5
Identities = 12/79 (15%), Positives = 38/79 (48%), Gaps = 1/79 (1%)
Query: 43 LLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEAGKMVIAVELDSRMVLEL-QRRFQST 101
++ ++++A + ++++G G G+++ +L+ + + L+ ++L
Sbjct: 177 FAIQLLLEEAKLDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNLPGAIDLVNENAAEK 236
Query: 102 PYSNRLKVIQGDVLKTDLP 120
++R++ I D+ K P
Sbjct: 237 GVADRMRGIAVDIYKESYP 255
>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation,
transferase; HET: SAH TYD; 1.40A {Micromonospora
chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A*
4e31_A* 4e2w_A* 4e2z_A* 4e30_A*
Length = 416
Score = 29.6 bits (67), Expect = 1.7
Identities = 10/42 (23%), Positives = 16/42 (38%)
Query: 44 LVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEAGKMVIAVE 85
L + I+EIG G + + + EAG + E
Sbjct: 95 LARDFLATELTGPDPFIVEIGCNDGIMLRTIQEAGVRHLGFE 136
>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure
initiative, NEW research center for structural genomics,
nysgxrc; HET: MSE; 1.90A {Bacillus halodurans}
Length = 233
Score = 29.1 bits (66), Expect = 1.7
Identities = 16/74 (21%), Positives = 35/74 (47%), Gaps = 9/74 (12%)
Query: 48 IVQKAGIKSTDVILEIGPGTGNLTKKLLEA---GKMVIAVELDSRMVLELQRR-FQSTPY 103
+++ A ILEIG G ++ +A ++++E D R E + ++
Sbjct: 49 LLKMAAPAR---ILEIGTAIGYSAIRMAQALPEAT-IVSIERDERR-YEEAHKHVKALGL 103
Query: 104 SNRLKVIQGDVLKT 117
+R++++ GD L+
Sbjct: 104 ESRIELLFGDALQL 117
>4f3n_A Uncharacterized ACR, COG1565 superfamily; structural genomics,
niaid, national institute of allergy AN infectious
diseases; 1.75A {Burkholderia thailandensis}
Length = 432
Score = 29.4 bits (66), Expect = 1.9
Identities = 23/87 (26%), Positives = 33/87 (37%), Gaps = 10/87 (11%)
Query: 43 LLVESIVQKAGIKSTDVILEIGPGTGNLTKKLLEAGKMVIAVELDSRMVLELQRRFQSTP 102
L + Q T ++E G GTG L LL A + VELD +++L
Sbjct: 124 TLARPVAQALDASGTRRVMEFGAGTGKLAAGLLTALA-ALGVELDEYAIVDL-------- 174
Query: 103 YSNRLKVIQGDVLKTDLPYFDICVANI 129
S L+ Q + L P V +
Sbjct: 175 -SGELRARQRETLGAQAPGLAARVRWL 200
>1zkd_A DUF185; NESG, RPR58, structural genomics, PSI, protein structure
INI northeast structural genomics consortium, unknown
function; 2.10A {Rhodopseudomonas palustris} SCOP:
c.66.1.52
Length = 387
Score = 29.3 bits (66), Expect = 2.2
Identities = 11/35 (31%), Positives = 17/35 (48%)
Query: 45 VESIVQKAGIKSTDVILEIGPGTGNLTKKLLEAGK 79
S+ + A T ++EIGPG G + L A +
Sbjct: 69 SASVWKAADEPQTLRLIEIGPGRGTMMADALRALR 103
>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics
consortium (SGC), methyltransferase, phosphoprotein,
S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens}
Length = 292
Score = 29.2 bits (64), Expect = 2.3
Identities = 17/134 (12%), Positives = 42/134 (31%), Gaps = 5/134 (3%)
Query: 60 ILEIGPGTGNLTKKLLEA--GKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKT 117
+L++G G+LT + ++ +++DSR++ R+ S L++ +
Sbjct: 50 VLDLGCNVGHLTLSIACKWGPSRMVGLDIDSRLI-HSARQNIRHYLSEELRLPPQTLEGD 108
Query: 118 DLPYFDICVANIPYQISSPLTFKLLF--HQPAFRCAIIMFQKEFAMRLVAQPGDKLYCRL 175
+ + + P + F +V G+ + R
Sbjct: 109 PGAEGEEGTTTVRKRSCFPASLTASRGPIAAPQVPLDGADTSVFPNNVVFVTGNYVLDRD 168
Query: 176 SVNTQLHARVSHLL 189
+ +L
Sbjct: 169 DLVEAQTPEYDVVL 182
>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta
with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB:
3dul_A*
Length = 223
Score = 28.7 bits (65), Expect = 2.4
Identities = 19/75 (25%), Positives = 35/75 (46%), Gaps = 10/75 (13%)
Query: 48 IVQKAGIKSTDVILEIGPGTG----NLTKKLLEAGKMVIAVELDSRMVLELQRR-FQSTP 102
+VQ G ++ ILEIG G L + L G+ V+ +E + ++ R +
Sbjct: 53 LVQIQGARN---ILEIGTLGGYSTIWLARGLSSGGR-VVTLEASEKHA-DIARSNIERAN 107
Query: 103 YSNRLKVIQGDVLKT 117
++R++V G L +
Sbjct: 108 LNDRVEVRTGLALDS 122
>2ayu_A Nucleosome assembly protein; histone chaperone; 3.00A
{Saccharomyces cerevisiae} SCOP: d.305.1.1 PDB: 2z2r_A
Length = 417
Score = 28.8 bits (63), Expect = 2.8
Identities = 10/43 (23%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Query: 281 LGDSNGDQSMGVDD--GSDDEMDVEDDDGDSDVEGEVSEFKDK 321
G + + ++ D++ + +DD G D +GE +E +D
Sbjct: 361 TGAALEFEFEEDEEEADEDEDEEEDDDHGLEDDDGESAEEQDD 403
>3k50_A Putative S41 protease; structural genomics, joint center for
structural genomics, JCSG, protein structure initiative;
2.00A {Bacteroides fragilis nctc 9343}
Length = 403
Score = 28.6 bits (64), Expect = 3.4
Identities = 10/87 (11%), Positives = 27/87 (31%), Gaps = 11/87 (12%)
Query: 12 KQKSGPYQGQGLGAGGISFHKSKGQHILKNPLLVESIV-----QKAGIKSTDVILEIG-- 64
P G + + + +V ++AG++ I+ +
Sbjct: 65 SLLDEPIPSYGFDYTLYKVLDNDTAYNAL----ISYVVPGSPAEEAGLQRGHWIMMMNGD 120
Query: 65 PGTGNLTKKLLEAGKMVIAVELDSRMV 91
T + +LL+ + + + +V
Sbjct: 121 YITKKVESELLQGSTRQLQIGVYKEVV 147
>2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine,
phosphorylation, M7G, spout MT, tRNA processing; HET:
SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E
Length = 246
Score = 28.2 bits (63), Expect = 3.8
Identities = 12/67 (17%), Positives = 29/67 (43%), Gaps = 9/67 (13%)
Query: 59 VILEIGPGTGNLTKKL--LEAGKMVIAVELDSRMVLELQRRFQSTPYSNR-------LKV 109
I +IG G G L L +++ +E+ ++ ++ R + + + V
Sbjct: 52 TIADIGCGFGGLMIDLSPAFPEDLILGMEIRVQVTNYVEDRIIALRNNTASKHGFQNINV 111
Query: 110 IQGDVLK 116
++G+ +K
Sbjct: 112 LRGNAMK 118
>3id1_A Regulator of sigma E protease; hydrolase, cell inner membrane, cell
membrane, membrane, metal-binding, metalloprotease,
transmembrane; 1.67A {Escherichia coli k-12} PDB: 2zpl_A
Length = 95
Score = 26.8 bits (59), Expect = 3.9
Identities = 8/64 (12%), Positives = 17/64 (26%), Gaps = 3/64 (4%)
Query: 46 ESIVQKAGIKSTDVILEIGPGTGNLTKKLLEAGKMVIAVELDSRMVLELQRRFQSTPYSN 105
SI +A I + + G T ++ D + +
Sbjct: 12 NSIAAEAQIAPGTELKAVD---GIETPDWDAVRLQLVDKIGDESTTITVAPFGSDQRRDV 68
Query: 106 RLKV 109
+L +
Sbjct: 69 KLDL 72
>2esr_A Methyltransferase; structural genomics, hypothetical protein,
streptococcus PYO PSI, protein structure initiative;
HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46
Length = 177
Score = 27.9 bits (63), Expect = 4.1
Identities = 12/55 (21%), Positives = 23/55 (41%), Gaps = 7/55 (12%)
Query: 66 GTGNLTKKLLEA---G-KMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLK 116
G+G L +EA G + VE + + +Q T NR +++ + +
Sbjct: 41 GSGGLA---IEAVSRGMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAER 92
>2qud_A Coat protein; bacteriophage, RNA-protein complex, capsid protein,
RNA BIND protein; 1.60A {Pseudomonas phage PP7} PDB:
2qux_A 1dwn_A
Length = 125
Score = 27.0 bits (59), Expect = 4.7
Identities = 19/74 (25%), Positives = 33/74 (44%), Gaps = 5/74 (6%)
Query: 52 AGIKSTDVILEIGPGTGNLTKKLLEAGKMVIAVELDS-----RMVLELQRRFQSTPYSNR 106
G S ++L +G T LT+ A + + ++ R+ L++ T Y
Sbjct: 1 GGSMSKTIVLSVGEATRTLTEIQSTADRQIFEEKVGPLVGRLRLTASLRQNGAKTAYRVN 60
Query: 107 LKVIQGDVLKTDLP 120
LK+ Q DV+ + LP
Sbjct: 61 LKLDQADVVDSGLP 74
>3num_A Serine protease HTRA1; DEGP, hydrolase; 2.75A {Homo sapiens} PDB:
3nzi_A 3nwu_A 2ytw_A 2joa_A
Length = 332
Score = 28.0 bits (63), Expect = 5.4
Identities = 9/48 (18%), Positives = 23/48 (47%), Gaps = 6/48 (12%)
Query: 50 QKAGIKSTDVILEIGPGTGNLTKKLLEAGKMVIAVELDSRMVLELQRR 97
+ G+K DVI+ I + ++ A + ++ +S + + ++R
Sbjct: 268 EAGGLKENDVIISIN------GQSVVSANDVSDVIKRESTLNMVVRRG 309
>3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold
methyltransferase, tRNA modification,
S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A
{Escherichia coli} PDB: 3dxx_A* 3dxz_A*
Length = 218
Score = 27.3 bits (61), Expect = 6.6
Identities = 15/62 (24%), Positives = 24/62 (38%), Gaps = 3/62 (4%)
Query: 55 KSTDVILEIGPGTGNLTKKLLEA--GKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQG 112
+ V LEIG G G + + + + +E+ S V SN L+V+
Sbjct: 33 REAPVTLEIGFGMGASLVAMAKDRPEQDFLGIEVHSPGVGACLASAHEEGLSN-LRVMCH 91
Query: 113 DV 114
D
Sbjct: 92 DA 93
>2l97_A HTRA, putative serine protease; HTRA-PDZ, protein binding; NMR
{Streptococcus pneumoniae}
Length = 134
Score = 26.8 bits (60), Expect = 6.7
Identities = 3/13 (23%), Positives = 7/13 (53%)
Query: 51 KAGIKSTDVILEI 63
++ DVI ++
Sbjct: 71 NGHLEKYDVITKV 83
>3m70_A Tellurite resistance protein TEHB homolog; structural genomics,
PSI-2, protein ST initiative; 1.95A {Haemophilus
influenzae}
Length = 286
Score = 27.6 bits (61), Expect = 6.7
Identities = 10/66 (15%), Positives = 25/66 (37%), Gaps = 3/66 (4%)
Query: 60 ILEIGPGTGNLTKKLLEAGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDVLKTDL 119
+L++G G G + L G V + + + + L + + + D+ ++
Sbjct: 124 VLDLGCGQGRNSLYLSLLGYDVTSWDHNENSIAFLNETKEKENLN--ISTALYDINAANI 181
Query: 120 P-YFDI 124
+D
Sbjct: 182 QENYDF 187
>3fby_A COMP, cartilage oligomeric matrix protein; signature domain, cell
adhesion, disease mutation, dwarfism, EGF-like domain,
glycoprotein, secreted; HET: NAG MAN; 3.15A {Homo
sapiens}
Length = 551
Score = 27.6 bits (61), Expect = 8.0
Identities = 8/36 (22%), Positives = 8/36 (22%)
Query: 275 GTDTPSLGDSNGDQSMGVDDGSDDEMDVEDDDGDSD 310
S D D D D D D D
Sbjct: 76 ERQCRKDNCVTVPNSGQEDVDRDGIGDACDPDADGD 111
>1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich,
S-adenosylmeth dependent, structural genomics, PSI;
2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53
Length = 214
Score = 26.8 bits (60), Expect = 9.5
Identities = 8/58 (13%), Positives = 21/58 (36%), Gaps = 3/58 (5%)
Query: 59 VILEIGPGTGNLTKKL--LEAGKMVIAVELDSRMVLELQRRFQSTPYSNRLKVIQGDV 114
+ +E+G G G + I +++ ++ + N +K++ D
Sbjct: 44 IHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGVPN-IKLLWVDG 100
>3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1,
S-adenosyl-L-methionine, tRNA Pro structural genomics,
structural genomics consortium, SGC; HET: SAM; 1.55A
{Homo sapiens}
Length = 235
Score = 26.9 bits (60), Expect = 9.5
Identities = 11/66 (16%), Positives = 28/66 (42%), Gaps = 9/66 (13%)
Query: 59 VILEIGPGTGNLTKKL--LEAGKMVIAVELDSRMV------LELQRRFQSTPYSNRLKVI 110
+IG G G L +L L +++ +E+ ++ + R + + N + +
Sbjct: 49 EFADIGCGYGGLLVELSPLFPDTLILGLEIRVKVSDYVQDRIRALRAAPAGGFQN-IACL 107
Query: 111 QGDVLK 116
+ + +K
Sbjct: 108 RSNAMK 113
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.136 0.387
Gapped
Lambda K H
0.267 0.0635 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,233,959
Number of extensions: 310417
Number of successful extensions: 1020
Number of sequences better than 10.0: 1
Number of HSP's gapped: 937
Number of HSP's successfully gapped: 180
Length of query: 359
Length of database: 6,701,793
Length adjustment: 95
Effective length of query: 264
Effective length of database: 4,049,298
Effective search space: 1069014672
Effective search space used: 1069014672
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.3 bits)