Query 018262
Match_columns 359
No_of_seqs 196 out of 509
Neff 5.6
Searched_HMMs 13730
Date Mon Mar 25 12:29:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018262.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/018262hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1zl8a1 a.194.1.1 (A:4-53) Lin 22.8 18 0.0013 23.8 1.7 13 12-24 36-48 (50)
2 d1y74a1 a.194.1.1 (A:17-73) Li 19.0 24 0.0018 23.8 1.7 14 12-25 37-50 (57)
3 d1rzhh2 f.23.10.1 (H:11-35) Ph 8.5 1E+02 0.0073 17.2 2.0 15 25-39 8-22 (26)
4 d1wv3a1 b.26.1.4 (A:1-78) Prot 7.9 45 0.0032 22.9 0.3 12 281-292 63-74 (78)
5 d1susa1 c.66.1.1 (A:21-247) Ca 6.9 49 0.0036 27.6 0.2 35 313-349 118-152 (227)
6 d2r25b1 c.23.1.1 (B:1087-1214) 6.4 81 0.0059 23.3 1.2 15 331-345 49-63 (128)
7 d1kf6d_ f.21.2.2 (D:) Fumarate 5.2 5.9E+02 0.043 18.9 8.9 83 80-163 21-109 (119)
8 d2a7la1 d.20.1.1 (A:1-117) Ubi 4.9 2.7E+02 0.019 19.9 3.5 26 328-353 43-71 (117)
9 d1qo0d_ c.23.1.3 (D:) Positive 4.9 1.3E+02 0.0095 22.9 1.7 12 332-343 50-61 (189)
10 d1ijdb_ f.3.1.1 (B:) Light-har 4.6 1.2E+02 0.0091 18.6 1.0 16 198-213 25-40 (40)
No 1
>d1zl8a1 a.194.1.1 (A:4-53) Lin-7 {Caenorhabditis elegans [TaxId: 6239]}
Probab=22.81 E-value=18 Score=23.80 Aligned_cols=13 Identities=46% Similarity=0.994 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHH
Q 018262 12 AIYFNSIREVYEA 24 (359)
Q Consensus 12 aiy~d~iRd~YEA 24 (359)
+-|++.|||+||-
T Consensus 36 SdF~~avREVYe~ 48 (50)
T d1zl8a1 36 SEFFGAVREVYET 48 (50)
T ss_dssp CSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 4589999999995
No 2
>d1y74a1 a.194.1.1 (A:17-73) Lin-7 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=19.01 E-value=24 Score=23.78 Aligned_cols=14 Identities=43% Similarity=0.743 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHH
Q 018262 12 AIYFNSIREVYEAW 25 (359)
Q Consensus 12 aiy~d~iRd~YEAf 25 (359)
+-|++.+||+||-.
T Consensus 37 SdF~~avREVYehv 50 (57)
T d1y74a1 37 SRFCSAIREVYEQL 50 (57)
T ss_dssp SHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 56899999999963
No 3
>d1rzhh2 f.23.10.1 (H:11-35) Photosystem II reaction centre subunit H, transmembrane region {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=8.52 E-value=1e+02 Score=17.25 Aligned_cols=15 Identities=13% Similarity=0.381 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHhcC
Q 018262 25 WVIYNFLSLCLAWVG 39 (359)
Q Consensus 25 fvIY~Ff~LL~~ylG 39 (359)
+..+.||.|++-|+-
T Consensus 8 w~fw~ffalli~ylq 22 (26)
T d1rzhh2 8 YSFWIFLAGLIYYLQ 22 (26)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 456788999998874
No 4
>d1wv3a1 b.26.1.4 (A:1-78) Protein EssC {Staphylococcus aureus [TaxId: 1280]}
Probab=7.88 E-value=45 Score=22.91 Aligned_cols=12 Identities=50% Similarity=0.830 Sum_probs=10.4
Q ss_pred HHhhcCCCceee
Q 018262 281 AVRRNKLDEIQL 292 (359)
Q Consensus 281 ~~~~~~~~~~~~ 292 (359)
.+|+|++|||++
T Consensus 63 lvrkgdldditl 74 (78)
T d1wv3a1 63 LVRKGDLDDITL 74 (78)
T ss_dssp EEEECSSSEEEE
T ss_pred EEeccCccceeE
Confidence 389999999987
No 5
>d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}
Probab=6.92 E-value=49 Score=27.56 Aligned_cols=35 Identities=17% Similarity=0.317 Sum_probs=23.8
Q ss_pred CChhhhhhcccccccCCCCCccccceeecccCCCCCC
Q 018262 313 AHSDAIKSSLLVDVSNSLSAPYDMALIDIDMSSYPAK 349 (359)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (359)
.+..++.+.++.+.. ..++||+++||.|=++||.-
T Consensus 118 g~a~~~L~~l~~~~~--~~~~fD~iFiDa~k~~y~~~ 152 (227)
T d1susa1 118 GPALPVLDEMIKDEK--NHGSYDFIFVDADKDNYLNY 152 (227)
T ss_dssp SCHHHHHHHHHHCGG--GTTCBSEEEECSCSTTHHHH
T ss_pred hHHHHHHHHHHhccc--cCCceeEEEeccchhhhHHH
Confidence 344556666554322 24689999999999999753
No 6
>d2r25b1 c.23.1.1 (B:1087-1214) Response regulator Sin1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=6.37 E-value=81 Score=23.25 Aligned_cols=15 Identities=27% Similarity=0.689 Sum_probs=12.4
Q ss_pred CCccccceeecccCC
Q 018262 331 SAPYDMALIDIDMSS 345 (359)
Q Consensus 331 ~~~~~~~~~~~~~~~ 345 (359)
+.+||++|+|+.+..
T Consensus 49 ~~~~dlillD~~mP~ 63 (128)
T d2r25b1 49 GENYNMIFMDVQMPK 63 (128)
T ss_dssp TCCCSEEEECSCCSS
T ss_pred cCCCCEEEEEeCCCC
Confidence 568999999998754
No 7
>d1kf6d_ f.21.2.2 (D:) Fumarate reductase subunit FrdD {Escherichia coli [TaxId: 562]}
Probab=5.16 E-value=5.9e+02 Score=18.91 Aligned_cols=83 Identities=20% Similarity=0.336 Sum_probs=55.0
Q ss_pred ceeehhhHHHHHHHHHHHHHhcCcccCCCcCCCcc----hhhH-HHHHHHHHHHHHHH-HHHHHHHHhhhcCCCCCcchh
Q 018262 80 GCVQFVILKPILVVATLILFANGKYKDGNFSPDQG----YLYI-TIIYTISYTMALYA-LVLFYMACRDLLHPFNPVPKF 153 (359)
Q Consensus 80 gVLQyvivrPl~tii~iIl~~~G~Y~eg~~s~~~a----~lyl-~iI~niSv~lALY~-L~lFy~~~k~~L~p~~P~~KF 153 (359)
|-.-..++-|++.++.-|+-..|....+..+.... +-|+ .++....+.+-||+ +--++..++| |+=+.|.+|.
T Consensus 21 GGm~~A~~~Pvlill~giLlPlG~~~~~a~~y~~i~aFa~s~iG~l~ll~~i~lplWh~~HRihHglHD-lkih~p~g~~ 99 (119)
T d1kf6d_ 21 GGMWSAIIAPVMILLVGILLPLGLFPGDALSYERVLAFAQSFIGRVFLFLMIVLPLWCGLHRMHHAMHD-LKIHVPAGKW 99 (119)
T ss_dssp HHHHHHHTHHHHHHHHHTTGGGTCSSTTTTSHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTCCCTTHHH
T ss_pred CchhHHHHHHHHHHHHHHHHhcccCCccccCHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hcccccchhH
Confidence 33446778899998888899999987676655433 2233 34445556666664 5566666654 8888899999
Q ss_pred hHHHHHHHHH
Q 018262 154 IMIKSVVFLT 163 (359)
Q Consensus 154 l~IKlVVFls 163 (359)
+|--+....|
T Consensus 100 ~fYg~A~l~s 109 (119)
T d1kf6d_ 100 VFYGLAAILT 109 (119)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8865544333
No 8
>d2a7la1 d.20.1.1 (A:1-117) Ubiquitin-protein ligase W (E2 W) {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.93 E-value=2.7e+02 Score=19.93 Aligned_cols=26 Identities=19% Similarity=0.351 Sum_probs=17.4
Q ss_pred CCCCCccccc--eeecccC-CCCCCCCCC
Q 018262 328 NSLSAPYDMA--LIDIDMS-SYPAKVPAA 353 (359)
Q Consensus 328 ~~~~~~~~~~--~~~~~~~-~~~~~~~~~ 353 (359)
.+.+.||.=- -+++++. +||.+-|..
T Consensus 43 Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v 71 (117)
T d2a7la1 43 GAPGTLYEGEKFQLLFKFSSRYPFDSPQV 71 (117)
T ss_dssp CCTTSTTTTCEEEEEEEECTTTTTSCCEE
T ss_pred CCCCccccCCeeeEEEecCcccccCCCEE
Confidence 4556677654 5666664 799988864
No 9
>d1qo0d_ c.23.1.3 (D:) Positive regulator of the amidase operon AmiR {Pseudomonas aeruginosa [TaxId: 287]}
Probab=4.92 E-value=1.3e+02 Score=22.91 Aligned_cols=12 Identities=25% Similarity=0.373 Sum_probs=10.4
Q ss_pred Cccccceeeccc
Q 018262 332 APYDMALIDIDM 343 (359)
Q Consensus 332 ~~~~~~~~~~~~ 343 (359)
.++|++|+|+++
T Consensus 50 ~~~Dlvl~D~~m 61 (189)
T d1qo0d_ 50 VPVDVVFTSIFQ 61 (189)
T ss_dssp SCCSEEEEECCS
T ss_pred CCCCEEEEcCCC
Confidence 479999999976
No 10
>d1ijdb_ f.3.1.1 (B:) Light-harvesting complex subunits {Rhodoblastus acidophilus [TaxId: 1074]}
Probab=4.57 E-value=1.2e+02 Score=18.64 Aligned_cols=16 Identities=38% Similarity=0.779 Sum_probs=11.7
Q ss_pred HHHHHHhhhccccccc
Q 018262 198 LIAAVGHLFAFPYKEY 213 (359)
Q Consensus 198 ~ifAilh~~AF~~k~Y 213 (359)
.++.++|.-||.+.|+
T Consensus 25 ~iA~~AH~La~~~tPW 40 (40)
T d1ijdb_ 25 VIAAIAHFLAFTLTPW 40 (40)
T ss_dssp HHHHHHHHHHHHTSCC
T ss_pred HHHHHHHHHHHhcCCC
Confidence 4566778888887774
Done!