BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 018264
(358 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8RWE8|GGAP1_ARATH GDP-L-galactose phosphorylase 1 OS=Arabidopsis thaliana GN=VTC2
PE=1 SV=1
Length = 442
Score = 160 bits (406), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 113/360 (31%), Positives = 175/360 (48%), Gaps = 43/360 (11%)
Query: 28 CFQGVKTLNYCLGNQSFFDNTSFVEPSGVPEDLSLLDALLLAQWEERMWRGCFRYDVTAS 87
C G + Y N + + ++ L++L+L +WE+R RG FRYDVTA
Sbjct: 35 CLNGARLPLYACKNLVKSGEKLVISHEAIEPPVAFLESLVLGEWEDRFQRGLFRYDVTAC 94
Query: 88 EIKVISGGKKFLAQLNEKWIMDPF--------ILNSIDQN---------EELLFCVTRSE 130
E KVI G F+AQLNE + +L S D + EELLF E
Sbjct: 95 ETKVIPGKYGFVAQLNEGRHLKKRPTEFRVDKVLQSFDGSKFNFTKVGQEELLFQFEAGE 154
Query: 131 KANSELIPSAAV--PNDSILVIINANPIEYGHVFVVP----CGSNRLYPDARSFEMIVRI 184
A + P + N +V IN +PIEYGHV ++P C R+ D +S + V +
Sbjct: 155 DAQVQFFPCMPIDPENSPSVVAINVSPIEYGHVLLIPRVLDCLPQRI--DHKSLLLAVHM 212
Query: 185 AFEINNYSFRLFYDCSSPGAS--HVYFQACYFPDHLPVELMPIDTFFSDGQRGIYISTLI 242
A E N FRL Y+ A+ H++FQA Y P+E P + G+ IS L+
Sbjct: 213 AAEAANPYFRLGYNSLGAFATINHLHFQAYYLAMPFPLEKAPTKKITTT-VSGVKISELL 271
Query: 243 DYPIKTILFEYTYNNRIIMMEAISEICSSLREKNISYNLLISDCGKRIFL----FLQKSA 298
YP++++LFE + + + + +S+ C L+ NI +N+LISDCG++IFL + +K A
Sbjct: 272 SYPVRSLLFEGGSSMQ-ELSDTVSDCCVCLQNNNIPFNILISDCGRQIFLMPQCYAEKQA 330
Query: 299 ISG----------NLLAWECGGYFLFGSKYEFDQVTEEAIHKRLSAVSLNDEGFQVVKQL 348
+ N WE G+ + K +++ +E+ + L+ SL++E F+ V L
Sbjct: 331 LGEVSPEVLETQVNPAVWEISGHMVLKRKEDYEGASEDNAWRLLAEASLSEERFKEVTAL 390
>sp|Q9FLP9|GGAP2_ARATH GDP-L-galactose phosphorylase 2 OS=Arabidopsis thaliana GN=VTC5
PE=1 SV=1
Length = 431
Score = 154 bits (388), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 111/331 (33%), Positives = 172/331 (51%), Gaps = 46/331 (13%)
Query: 60 LSLLDALLLAQWEERMWRGCFRYDVTASEIKVISGGKKFLAQLNE-------------KW 106
++ L++L++ +WE+R RG FRYDVTA E KVI G F+AQLNE
Sbjct: 61 VTFLESLVIGEWEDRFQRGLFRYDVTACETKVIPGKYGFIAQLNEGRHLKKRPTEFRVDK 120
Query: 107 IMDPFILNSID----QNEELLFCVTRS-EKANSELIPSAAVP----NDSILVIINANPIE 157
++ PF N + EELLF S +SE+ A++P N +V IN +PIE
Sbjct: 121 VLQPFDGNKFNFTKVGQEELLFQFKASTNDDDSEIQFLASMPLDADNSPSVVAINVSPIE 180
Query: 158 YGHVFVVP----CGSNRLYPDARSFEMIVRIAFEINNYSFRLFYDCSSPGAS--HVYFQA 211
YGHV ++P C R+ D +S + +++A E +N FRL Y+ A+ H++FQA
Sbjct: 181 YGHVLLIPRVLDCLPQRI--DHKSLLLALQMAAEADNPYFRLGYNSLGAFATINHLHFQA 238
Query: 212 CYFPDHLPVELMPIDTFFSDGQRGIYISTLIDYPIKTILFEYTYNNRIIMMEAISEICSS 271
Y P+E + G+ IS L++YP++ +L E N + + +S+
Sbjct: 239 YYLAMQFPIEKAS-SLKITTTNNGVKISKLLNYPVRGLLVE-GGNTIKDLADTVSDASVC 296
Query: 272 LREKNISYNLLISDCGKRIFL----FLQKSA---ISGNLL-------AWECGGYFLFGSK 317
L+ NI +N+LISD GKRIFL + +K A +S LL WE G+ + K
Sbjct: 297 LQNNNIPFNILISDSGKRIFLLPQCYAEKQALGEVSSTLLDTQVNPAVWEMSGHMVLKRK 356
Query: 318 YEFDQVTEEAIHKRLSAVSLNDEGFQVVKQL 348
+++ +EE + L+ VSL++E F+ V +
Sbjct: 357 EDYEGASEEKAWRLLAEVSLSEERFREVNTM 387
>sp|Q6ZNW5|GDPP1_HUMAN GDP-D-glucose phosphorylase 1 OS=Homo sapiens GN=GDPGP1 PE=1 SV=2
Length = 385
Score = 85.5 bits (210), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 82/319 (25%), Positives = 137/319 (42%), Gaps = 59/319 (18%)
Query: 55 GVPEDL--SLLDALLLAQWEERMWRGCFRYDVTASEIKVISGGKKFLAQLN-EKWIM--D 109
G+P+ L S DA L + W++R+ G FRY + + +++ G F+AQLN E+ +
Sbjct: 49 GIPDALPQSPFDAALCSAWKQRVELGLFRYRLRELQTQILPGAVGFVAQLNVERGVQRRP 108
Query: 110 PFILNSIDQ-------------NEELLFCVTRSEKANSELIPSAAVPNDSILVIINANPI 156
P + S+ Q E+LF + R L+ + ILV+IN +P+
Sbjct: 109 PQTIKSVRQAFDPVQFNFNKIRPGEVLFRLHREPDLPGTLL------QEDILVVINVSPL 162
Query: 157 EYGHVFVVPCGSNRLYPDARSFEMIVRIAFEIN----NYSFRLFYDCSSPGAS--HVYFQ 210
E+GHV +VP + +L R +R E + FR+ ++ AS H++
Sbjct: 163 EWGHVLLVPEPARQL--PQRLLPGALRAGIEAVLLSLHPGFRVGFNSLGGLASVNHLHLH 220
Query: 211 ACYFPDHLPVELMPIDTFFSDGQRGIYISTLIDYPIKTILFEYTYNNRIIMMEAISEICS 270
Y LPVE P + G ++ L D P LF YT + IS +C
Sbjct: 221 GYYLAHRLPVEQAPSEPLDPGG----HLHLLQDLPAPGFLF-YTRGPGPDLESLISRVCR 275
Query: 271 S---LREKNISYNLLISD-------------CGKRIFLFLQKSAI------SGNLLAWEC 308
+ L + I++NL ++ G R+ L+ +KS+ + N+ E
Sbjct: 276 ATDYLTDHEIAHNLFVTRGAPPGKTSPSSALTGVRVILWARKSSFGIKDGEAFNVALCEL 335
Query: 309 GGYFLFGSKYEFDQVTEEA 327
G+ + +F +TE A
Sbjct: 336 AGHLPVKTSQDFSSLTEAA 354
>sp|Q3TLS3|GDPP1_MOUSE GDP-D-glucose phosphorylase 1 OS=Mus musculus GN=Gdpgp1 PE=2 SV=2
Length = 386
Score = 84.3 bits (207), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 85/313 (27%), Positives = 133/313 (42%), Gaps = 58/313 (18%)
Query: 60 LSLLDALLLAQWEERMWRGCFRYDVTASEIKVISGGKKFLAQLN-EKWIM---------- 108
LS D+ L + W +R+ G FRY + + +++ G F+AQLN E+ I
Sbjct: 56 LSRFDSALRSAWRQRLELGLFRYRLEDLQTQILPGSVGFVAQLNIERGIQRRRPQNIRSV 115
Query: 109 ----DP--FILNSIDQNEELLFCVTRSEKANSELIPSAAVPNDSILVIINANPIEYGHVF 162
DP F N I E +LF + R K P+ D +LV+IN +P+E+GHV
Sbjct: 116 RQEFDPEQFNFNKIRPGE-VLFRMQREPKG-----PATPKQEDDVLVVINVSPLEWGHVL 169
Query: 163 VVPCGSNRLYPDARSFEMIVRIAFEIN----NYSFRLFYDCSSPGAS--HVYFQACYFPD 216
+VP + L R ++R+ E + FR+ ++ AS H++ Y
Sbjct: 170 LVPAPAQGL--PQRLLPGVLRVGLEAVLLSLHPGFRVGFNSLGGLASVNHLHLHCYYLAH 227
Query: 217 HLPVELMPIDTFFSDGQRGIYISTLIDYPIKTILFEYTYNNRIIMMEAISEICSS---LR 273
LPVE P G I L P LF YT + IS +C + L
Sbjct: 228 PLPVEGAPSTPLDPKG----CIHLLQALPAPGFLF-YTSGPGPDLEVLISRVCRATDYLS 282
Query: 274 EKNISYNLLISD-------------CGKRIFLFLQKSAI----SG--NLLAWECGGYFLF 314
++ I++NL ++ G R+ L+ +KS+ SG N+ E G+
Sbjct: 283 DREIAHNLFVTRGAPPGPTSSTSDLSGIRVILWARKSSFGIKESGAFNVALCELAGHLPV 342
Query: 315 GSKYEFDQVTEEA 327
+ +F +TE A
Sbjct: 343 KTSQDFSSLTEAA 355
>sp|Q5E9T1|GDPP1_BOVIN GDP-D-glucose phosphorylase 1 OS=Bos taurus GN=GDPGP1 PE=2 SV=1
Length = 385
Score = 76.6 bits (187), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 82/313 (26%), Positives = 129/313 (41%), Gaps = 59/313 (18%)
Query: 60 LSLLDALLLAQWEERMWRGCFRYDVTASEIKVISGGKKFLAQLN-EKWIM---------- 108
LS D+ L + W +RM G FRY + + + G F+AQLN E+ +
Sbjct: 56 LSHFDSALCSAWRQRMELGLFRYPLGELPTQTLPGTVGFVAQLNVERGVQRRCPQNIKSV 115
Query: 109 ----DP--FILNSIDQNEELLFCVTRSEKANSELIPSAAVPNDSILVIINANPIEYGHVF 162
DP F N I E +LF + R + S V + ILV+IN +P+E+GHV
Sbjct: 116 RQEFDPEQFNFNQIRPGE-VLFRLHRKQDC------SGTVQQEDILVVINVSPLEWGHVL 168
Query: 163 VVPCGS----NRLYPDARSFEMIVRIAFEINNYSFRLFYDCSSPGAS--HVYFQACYFPD 216
+VP + RL P A V ++ FR+ ++ AS H++ Y
Sbjct: 169 LVPEPARGLPQRLLPGA--LRAGVEAVLLSSHPGFRVGFNSLGGLASVNHLHLHGYYLAH 226
Query: 217 HLPVELMPIDTFFSDGQRGIYISTLIDYPIKTILFEYTYNNRIIMMEAISEICSS---LR 273
LPVE P + G+ + L P LF YT + IS +C + L
Sbjct: 227 RLPVEGAPSEPLDPRGR----LHVLQALPAPGFLF-YTSRPGPDLEALISRVCRATDYLT 281
Query: 274 EKNISYNLLISD-------------CGKRIFLFLQKSAI------SGNLLAWECGGYFLF 314
+ I++NL ++ G R+ L+ +K + + N+ E G+
Sbjct: 282 DCEIAHNLFVTRGAPPGKATSSSALSGVRVILWPRKPSFGIKEGEAFNVALCELAGHLPV 341
Query: 315 GSKYEFDQVTEEA 327
+ +F +TE A
Sbjct: 342 KTAQDFSSLTEAA 354
>sp|Q8HXE4|GDPP1_MACFA GDP-D-glucose phosphorylase 1 OS=Macaca fascicularis GN=GDPGP1 PE=2
SV=1
Length = 385
Score = 76.3 bits (186), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 81/313 (25%), Positives = 134/313 (42%), Gaps = 61/313 (19%)
Query: 61 SLLDALLLAQWEERMWRGCFRYDVTASEIKVISGGKKFLAQLN-EKWIM----------- 108
S DA L + W++R+ G FRY + + +++ G F+AQLN E+ +
Sbjct: 57 SPFDAALCSAWKQRVELGLFRYRLRELQTQILPGVVGFVAQLNVERGVQRRRPQTIKSVR 116
Query: 109 ---DP--FILNSIDQNEELLFCVTRSEKANSELIPSAAVPNDSILVIINANPIEYGHVFV 163
DP F N I Q E+L+ + R L+ + ILV+IN +P+E+GHV +
Sbjct: 117 QAFDPEQFNFNKI-QPGEVLYRLHREPDLPGTLL------QEDILVVINVSPLEWGHVLL 169
Query: 164 VPCGS----NRLYPDA-RSFEMIVRIAFEINNYSFRLFYDCSSPGAS--HVYFQACYFPD 216
VP + RL P A R+ V ++ + FR+ ++ AS H++ Y
Sbjct: 170 VPEPARGLPQRLLPGALRAGIEAVLLSL---HPGFRVGFNSLGGLASVNHLHLHGYYLAH 226
Query: 217 HLPVELMPIDTFFSDGQRGIYISTLIDYPIKTILFEYTYNNRIIMMEAISEICSS---LR 273
LPVE P + G ++ L P LF YT + + I +C + L
Sbjct: 227 RLPVEQAPSEPLDPGG----HLHLLQGLPAPGFLF-YTRGPGLDLESLICRVCRATDYLT 281
Query: 274 EKNISYNLLISD-------------CGKRIFLFLQKSAI------SGNLLAWECGGYFLF 314
+ I++NL ++ G R+ L+ +KS + N+ E G+
Sbjct: 282 DHEIAHNLFVTRGAPPGKTSPSSALTGVRVILWARKSCFGIKDGEAFNVALCELAGHLPV 341
Query: 315 GSKYEFDQVTEEA 327
+ +F +TE A
Sbjct: 342 KTSQDFSSLTEAA 354
>sp|Q0V9F1|GDPP1_XENTR GDP-D-glucose phosphorylase 1 OS=Xenopus tropicalis GN=gdpgp1 PE=2
SV=1
Length = 399
Score = 70.1 bits (170), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 84/368 (22%), Positives = 150/368 (40%), Gaps = 83/368 (22%)
Query: 42 QSFFDNTSFVEPSGVPEDLSLLDALLLAQWEERMWRGCFRYDVTASEIKVISGGKKFLAQ 101
Q F ++TSF+ P D L ++WEE+M G FRY + + K++ G ++AQ
Sbjct: 34 QEFAEDTSFLSP---------FDKALQSKWEEKMNEGLFRYPLRNVQTKILPGSVSYVAQ 84
Query: 102 LN-----------------EKWIMDPFILNSIDQNEELLFCVTRSE---KANSELI---- 137
LN +K+ + F N I ++EE++F + RSE +S ++
Sbjct: 85 LNIQRSINRRKPEDIWSVQQKFNPNQFNYNKI-KSEEIVFQMIRSEAEHSVDSHIVQGSM 143
Query: 138 ---------PSAAVPNDS---------ILVIINANPIEYGHVFVVP----CGSNRLYPDA 175
S + P S LV+IN +P+E+GHV +P C L +
Sbjct: 144 VNGMGSSECKSGSTPQGSCTLECKSSCTLVVINVSPLEFGHVLFMPDPSLCLPQILTENL 203
Query: 176 RSFEMIVRIAFEINNYSFRLFYDCSSPGAS--HVYFQACYFPDHLPVELMPIDTFFSDGQ 233
F M F ++ FR+ ++ AS H++ Y L +E +
Sbjct: 204 MLFGM--ESVFLSSHPGFRVGFNSLGGFASVNHLHLHGFYLDHELLIESSCSKPLCPE-- 259
Query: 234 RGIYISTLIDYPIKTILFEYTYNNRIIMMEAISEICSSLREKNISYNLLIS-----DCGK 288
I + +P LF + + I ++ L KNI++NL ++ D GK
Sbjct: 260 --INFHLVTHFPAPGFLFYTDGKDLKSTAQKICKVTDFLVAKNIAHNLFVTRGSNPDTGK 317
Query: 289 --------RIFLFLQKSAISG------NLLAWECGGYFLFGSKYEFDQVTEEAIHKRLSA 334
R+ ++ +K + N+ E G+ ++ +F +TE+++ + +
Sbjct: 318 VSEDRNGIRVIIWARKPSFGAKEVSAFNVALCELAGHLPVKNQEDFISITEDSVIAIIHS 377
Query: 335 VSLNDEGF 342
L D+ F
Sbjct: 378 CLLADDEF 385
>sp|Q08CA1|GDPP1_DANRE GDP-D-glucose phosphorylase 1 OS=Danio rerio GN=gdpgp1 PE=2 SV=1
Length = 343
Score = 67.0 bits (162), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 75/313 (23%), Positives = 130/313 (41%), Gaps = 66/313 (21%)
Query: 61 SLLDALLLAQWEERMWRGCFRYDVTASEIKVISGGKKFLAQLN---------------EK 105
S D L + W E+ G FRY + E +++ G + ++AQLN +
Sbjct: 29 SRFDIALRSGWTEKRNTGLFRYRLDELETRILPGSRGYIAQLNIMRGTERRKPQEILSVR 88
Query: 106 WIMDP--FILNSIDQNEELLFCVTR-SEKANSELIPSAAVPNDSILVIINANPIEYGHVF 162
DP F N I+ +ELLF + R SE+ S VIIN +P+E+GH
Sbjct: 89 QNFDPKQFNFNKINP-KELLFELKRESERKCS--------------VIINVSPLEFGHCL 133
Query: 163 VVPCGSNRLYPDARSFEMIVRIAFEI----NNYSFRLFYDCSSPGAS--HVYFQACYFPD 216
+VP + +P + + V+ E + FR+ ++ AS H++ Y
Sbjct: 134 LVP-EPEKCFPQVLT-HLAVQTGIETVLLSADPGFRVGFNSLGGFASVNHLHLHGYYLNH 191
Query: 217 HLPVELMPIDTFFSDGQRGIYISTLIDYPIKTILFEYTYNNRIIMMEAISEICSSLREKN 276
L +E P + + + L+D+P LF N ++++AI + L + N
Sbjct: 192 RLKIESSPAKLVLPN----LNLYELVDFP-SGFLFYTQGPNLDLVVKAICSLTDVLVDHN 246
Query: 277 ISYNLLI--------------SDCGKRIFL------FLQKSAISGNLLAWECGGYFLFGS 316
I++NL + S G R+ + F K + N+ E G+ F +
Sbjct: 247 IAHNLFLTRGCPPQMEPDTSSSRNGVRVIVWPRLSCFGAKEESAFNVALCELAGHLPFKN 306
Query: 317 KYEFDQVTEEAIH 329
+ +++ TEE +
Sbjct: 307 RQDYESATEETVQ 319
>sp|A8E5Y3|GDPP1_XENLA GDP-D-glucose phosphorylase 1 OS=Xenopus laevis GN=gdpgp1 PE=2 SV=1
Length = 399
Score = 60.8 bits (146), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 84/369 (22%), Positives = 147/369 (39%), Gaps = 79/369 (21%)
Query: 45 FDNTSFVEPSGVPEDLSLL---DALLLAQWEERMWRGCFRYDVTASEIKVISGGKKFLAQ 101
F S+ E ED S L D L ++WE++M G FRY + + K++ G ++AQ
Sbjct: 26 FSGLSWKERRQYAEDTSFLSPFDKALQSKWEQKMNEGLFRYPLRNLQTKILPGSLSYVAQ 85
Query: 102 LN-----------EKW-IMDPFILNSIDQN----EELLFCVTRSEK---ANSELIPSAAV 142
LN + W I F N + N EE++F + RSE +S+ + ++V
Sbjct: 86 LNIQRSINRRKPEDIWSIQQKFNPNQFNYNKIKPEEIVFQMIRSETEHCVDSDKVHGSSV 145
Query: 143 ----------------------PNDSILVIINANPIEYGHVFVVP----CGSNRLYPDAR 176
LV+IN +P+E+GHV +P C L D
Sbjct: 146 NGMGTSDCKSGSTHQRCCILECKGGCTLVVINVSPLEFGHVLFMPDPSLCLPQILTEDLM 205
Query: 177 SF--EMIVRIAFEINNYSFRLFYDCSSPGAS--HVYFQACYFPDHLPVELMPIDTFFSDG 232
F E ++ A + FR+ ++ AS H++ Y L +E +
Sbjct: 206 LFGLESVLLSA----HPGFRVGFNSLGGFASVNHLHLHGFYLDHDLFIESSSSKPLCPE- 260
Query: 233 QRGIYISTLIDYPIKTILFEYTYNNRIIMMEAISEICSSLREKNISYNLLIS-----DCG 287
+ + +P + LF N + I ++ L KNI++NL I+ D G
Sbjct: 261 ---MNFHLITHFPAPSFLFYTDGRNLKSTAQNICKVTDFLVAKNIAHNLFITRGSNPDTG 317
Query: 288 K--------RIFLFLQKSAISG------NLLAWECGGYFLFGSKYEFDQVTEEAIHKRLS 333
R+ ++ +K + N+ E G+ ++ +F+ +TE+++ +
Sbjct: 318 NGSEGRNGIRVNIWARKPSFGAKEVSAFNVALCELAGHLPVKNQEDFNSITEDSVIDIIH 377
Query: 334 AVSLNDEGF 342
L D+ F
Sbjct: 378 NCLLADDEF 386
>sp|Q5ZR76|GDPP1_CAEEL GDP-D-glucose phosphorylase 1 OS=Caenorhabditis elegans GN=gdpgp1
PE=1 SV=1
Length = 482
Score = 33.9 bits (76), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 39/77 (50%), Gaps = 8/77 (10%)
Query: 145 DSILVIINANPIEYGHVFVVPCGSNRLYPDARSFEMIVRIAFE----INNYSFRLFYDC- 199
D LV +NA+P+E H +VP N+ P + + VRIA + +++ F + ++
Sbjct: 188 DRHLVAVNASPLERDHSLIVP-SVNKCSPQVLTLQA-VRIAVDLMLLVDDDMFHILFNSL 245
Query: 200 -SSPGASHVYFQACYFP 215
+H++ A Y+P
Sbjct: 246 LGQASVNHLHLHAMYWP 262
>sp|Q1JI30|SYT_STRPD Threonine--tRNA ligase OS=Streptococcus pyogenes serotype M2
(strain MGAS10270) GN=thrS PE=3 SV=1
Length = 647
Score = 33.1 bits (74), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 46/100 (46%), Gaps = 13/100 (13%)
Query: 159 GHVFVVPCGSNRLYPDARSFEMIVRI--AFEINNYSFRLFYDCSSPGASHVYFQACYFPD 216
GH+FV P + R+ ++I+ + F + +Y FRL Y P +H Y+ +
Sbjct: 384 GHIFVTPEQIQEEF--QRALQLIIDVYADFNLTDYRFRLSY--RDPNDTHKYYDNDEMWE 439
Query: 217 H------LPVELMPIDTFFSDGQRGIYISTLIDYPIKTIL 250
+ ++ M +D F ++G+ Y L D +KT L
Sbjct: 440 NAQSMLKAALDEMDVDYFEAEGEAAFYGPKL-DIQVKTAL 478
>sp|Q6N1Y7|NDVA_RHOPA Beta-(1-->2)glucan export ATP-binding/permease protein NdvA
OS=Rhodopseudomonas palustris (strain ATCC BAA-98 /
CGA009) GN=ndvA PE=3 SV=1
Length = 599
Score = 33.1 bits (74), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 48/101 (47%), Gaps = 4/101 (3%)
Query: 31 GVKTLNYCLGNQSFFDNTSFVEPSGVPEDLSLLDALLLAQWEERMWRGCFRYDVTASEI- 89
GV L ++S DN +P PE+L L A AQ E + R ++D A E
Sbjct: 422 GVVFQEALLFDRSIADNLRVGKPDATPEELRL--AAERAQALEFIERSDHKFDTNAGERG 479
Query: 90 KVISGGKKFLAQLNEKWIMDPFILNSIDQNEELLFCVTRSE 130
+++SGG++ + + DP IL +D+ L VT ++
Sbjct: 480 RMLSGGERQRLSIARALLKDPPIL-ILDEATSALDAVTEAK 519
>sp|P0DG59|SYT_STRPQ Threonine--tRNA ligase OS=Streptococcus pyogenes serotype M3
(strain SSI-1) GN=thrS PE=3 SV=1
Length = 647
Score = 33.1 bits (74), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 46/100 (46%), Gaps = 13/100 (13%)
Query: 159 GHVFVVPCGSNRLYPDARSFEMIVRI--AFEINNYSFRLFYDCSSPGASHVYFQACYFPD 216
GH+FV P + R+ ++I+ + F + +Y FRL Y P +H Y+ +
Sbjct: 384 GHIFVTPEQIQEEF--QRALQLIIDVYADFNLTDYRFRLSY--RDPNDTHKYYDNDEMWE 439
Query: 217 H------LPVELMPIDTFFSDGQRGIYISTLIDYPIKTIL 250
+ ++ M +D F ++G+ Y L D +KT L
Sbjct: 440 NAQSMLKAALDEMGVDYFEAEGEAAFYGPKL-DIQVKTAL 478
>sp|A2RFY5|SYT_STRPG Threonine--tRNA ligase OS=Streptococcus pyogenes serotype M5
(strain Manfredo) GN=thrS PE=3 SV=1
Length = 647
Score = 33.1 bits (74), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 46/100 (46%), Gaps = 13/100 (13%)
Query: 159 GHVFVVPCGSNRLYPDARSFEMIVRI--AFEINNYSFRLFYDCSSPGASHVYFQACYFPD 216
GH+FV P + R+ ++I+ + F + +Y FRL Y P +H Y+ +
Sbjct: 384 GHIFVTPEQIQEEF--QRALQLIIDVYADFNLTDYRFRLSY--RDPNDTHKYYDNDEMWE 439
Query: 217 H------LPVELMPIDTFFSDGQRGIYISTLIDYPIKTIL 250
+ ++ M +D F ++G+ Y L D +KT L
Sbjct: 440 NAQSMLKAALDEMGVDYFEAEGEAAFYGPKL-DIQVKTAL 478
>sp|Q1JMY5|SYT_STRPC Threonine--tRNA ligase OS=Streptococcus pyogenes serotype M12
(strain MGAS9429) GN=thrS PE=3 SV=1
Length = 647
Score = 33.1 bits (74), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 46/100 (46%), Gaps = 13/100 (13%)
Query: 159 GHVFVVPCGSNRLYPDARSFEMIVRI--AFEINNYSFRLFYDCSSPGASHVYFQACYFPD 216
GH+FV P + R+ ++I+ + F + +Y FRL Y P +H Y+ +
Sbjct: 384 GHIFVTPEQIQEEF--QRALQLIIDVYADFNLTDYRFRLSY--RDPNDTHKYYDNDEMWE 439
Query: 217 H------LPVELMPIDTFFSDGQRGIYISTLIDYPIKTIL 250
+ ++ M +D F ++G+ Y L D +KT L
Sbjct: 440 NAQSMLKAALDEMGVDYFEAEGEAAFYGPKL-DIQVKTAL 478
>sp|Q1JD10|SYT_STRPB Threonine--tRNA ligase OS=Streptococcus pyogenes serotype M12
(strain MGAS2096) GN=thrS PE=3 SV=1
Length = 647
Score = 33.1 bits (74), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 46/100 (46%), Gaps = 13/100 (13%)
Query: 159 GHVFVVPCGSNRLYPDARSFEMIVRI--AFEINNYSFRLFYDCSSPGASHVYFQACYFPD 216
GH+FV P + R+ ++I+ + F + +Y FRL Y P +H Y+ +
Sbjct: 384 GHIFVTPEQIQEEF--QRALQLIIDVYADFNLTDYRFRLSY--RDPNDTHKYYDNDEMWE 439
Query: 217 H------LPVELMPIDTFFSDGQRGIYISTLIDYPIKTIL 250
+ ++ M +D F ++G+ Y L D +KT L
Sbjct: 440 NAQSMLKAALDEMGVDYFEAEGEAAFYGPKL-DIQVKTAL 478
>sp|Q8P234|SYT_STRP8 Threonine--tRNA ligase OS=Streptococcus pyogenes serotype M18
(strain MGAS8232) GN=thrS PE=3 SV=1
Length = 647
Score = 33.1 bits (74), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 46/100 (46%), Gaps = 13/100 (13%)
Query: 159 GHVFVVPCGSNRLYPDARSFEMIVRI--AFEINNYSFRLFYDCSSPGASHVYFQACYFPD 216
GH+FV P + R+ ++I+ + F + +Y FRL Y P +H Y+ +
Sbjct: 384 GHIFVTPEQIQEEF--QRALQLIIDVYADFNLTDYRFRLSY--RDPNDTHKYYDNDEMWE 439
Query: 217 H------LPVELMPIDTFFSDGQRGIYISTLIDYPIKTIL 250
+ ++ M +D F ++G+ Y L D +KT L
Sbjct: 440 NAQSMLKAALDEMGVDYFEAEGEAAFYGPKL-DIQVKTAL 478
>sp|P0DG58|SYT_STRP3 Threonine--tRNA ligase OS=Streptococcus pyogenes serotype M3
(strain ATCC BAA-595 / MGAS315) GN=thrS PE=3 SV=1
Length = 647
Score = 33.1 bits (74), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 46/100 (46%), Gaps = 13/100 (13%)
Query: 159 GHVFVVPCGSNRLYPDARSFEMIVRI--AFEINNYSFRLFYDCSSPGASHVYFQACYFPD 216
GH+FV P + R+ ++I+ + F + +Y FRL Y P +H Y+ +
Sbjct: 384 GHIFVTPEQIQEEF--QRALQLIIDVYADFNLTDYRFRLSY--RDPNDTHKYYDNDEMWE 439
Query: 217 H------LPVELMPIDTFFSDGQRGIYISTLIDYPIKTIL 250
+ ++ M +D F ++G+ Y L D +KT L
Sbjct: 440 NAQSMLKAALDEMGVDYFEAEGEAAFYGPKL-DIQVKTAL 478
>sp|Q5XDC4|SYT_STRP6 Threonine--tRNA ligase OS=Streptococcus pyogenes serotype M6
(strain ATCC BAA-946 / MGAS10394) GN=thrS PE=3 SV=1
Length = 647
Score = 33.1 bits (74), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 46/100 (46%), Gaps = 13/100 (13%)
Query: 159 GHVFVVPCGSNRLYPDARSFEMIVRI--AFEINNYSFRLFYDCSSPGASHVYFQACYFPD 216
GH+FV P + R+ ++I+ + F + +Y FRL Y P +H Y+ +
Sbjct: 384 GHIFVTPEQIQEEF--QRALQLIIDVYADFNLTDYRFRLSY--RDPNDTHKYYDNDEMWE 439
Query: 217 H------LPVELMPIDTFFSDGQRGIYISTLIDYPIKTIL 250
+ ++ M +D F ++G+ Y L D +KT L
Sbjct: 440 NAQSMLKAALDEMGVDYFEAEGEAAFYGPKL-DIQVKTAL 478
>sp|Q9A115|SYT_STRP1 Threonine--tRNA ligase OS=Streptococcus pyogenes serotype M1
GN=thrS PE=3 SV=1
Length = 647
Score = 33.1 bits (74), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 46/100 (46%), Gaps = 13/100 (13%)
Query: 159 GHVFVVPCGSNRLYPDARSFEMIVRI--AFEINNYSFRLFYDCSSPGASHVYFQACYFPD 216
GH+FV P + R+ ++I+ + F + +Y FRL Y P +H Y+ +
Sbjct: 384 GHIFVTPEQIQEEF--QRALQLIIDVYADFNLTDYRFRLSY--RDPNDTHKYYDNDEMWE 439
Query: 217 H------LPVELMPIDTFFSDGQRGIYISTLIDYPIKTIL 250
+ ++ M +D F ++G+ Y L D +KT L
Sbjct: 440 NAQSMLKAALDEMGVDYFEAEGEAAFYGPKL-DIQVKTAL 478
>sp|B5XKA6|SYT_STRPZ Threonine--tRNA ligase OS=Streptococcus pyogenes serotype M49
(strain NZ131) GN=thrS PE=3 SV=1
Length = 647
Score = 32.7 bits (73), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 46/100 (46%), Gaps = 13/100 (13%)
Query: 159 GHVFVVPCGSNRLYPDARSFEMIVRI--AFEINNYSFRLFYDCSSPGASHVYFQACYFPD 216
GH+FV P + R+ ++I+ + F + +Y FRL Y P +H Y+ +
Sbjct: 384 GHIFVTPEQIQEEF--QRALQLIIDVYADFNLTDYRFRLSY--RDPNDTHKYYDNDEMWE 439
Query: 217 H------LPVELMPIDTFFSDGQRGIYISTLIDYPIKTIL 250
+ ++ M +D F ++G+ Y L D +KT L
Sbjct: 440 NAQSMLKAALDEMGVDYFEAEGEAAFYGPKL-DIQVKTAL 478
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.323 0.138 0.420
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 130,359,871
Number of Sequences: 539616
Number of extensions: 5298205
Number of successful extensions: 10321
Number of sequences better than 100.0: 23
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 10295
Number of HSP's gapped (non-prelim): 24
length of query: 358
length of database: 191,569,459
effective HSP length: 119
effective length of query: 239
effective length of database: 127,355,155
effective search space: 30437882045
effective search space used: 30437882045
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 62 (28.5 bits)