BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 018265
(358 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1SEV|A Chain A, Mature And Translocatable Forms Of Glyoxysomal Malate
Dehydrogenase Have Different Activities And Stabilities
But Similar Crystal Structures
pdb|1SEV|B Chain B, Mature And Translocatable Forms Of Glyoxysomal Malate
Dehydrogenase Have Different Activities And Stabilities
But Similar Crystal Structures
Length = 362
Score = 637 bits (1644), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 313/355 (88%), Positives = 329/355 (92%), Gaps = 1/355 (0%)
Query: 3 QPTSGANQRIARIAAHLHPPTLQIEGESSGLGRMDCRAKGGSPGFKVAVLGAAGGIGQPL 62
QP NQRIARI+AHLHPP Q+E ESS L R +CRAKGG+PGFKVA+LGAAGGIGQPL
Sbjct: 2 QPIPDVNQRIARISAHLHPPKSQME-ESSALRRANCRAKGGAPGFKVAILGAAGGIGQPL 60
Query: 63 AMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPA 122
AMLMK+NPLVSVLHLYDVVN PGVTADISHMDT AVVRGFLGQQQLE ALTGMD++I+PA
Sbjct: 61 AMLMKMNPLVSVLHLYDVVNAPGVTADISHMDTGAVVRGFLGQQQLEAALTGMDLIIVPA 120
Query: 123 GVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGT 182
GVPRKPGMTRDDLF INAGIVKTLCEGIAKCCP+AIVNLISNPVNSTVPIAAEVFKK GT
Sbjct: 121 GVPRKPGMTRDDLFKINAGIVKTLCEGIAKCCPRAIVNLISNPVNSTVPIAAEVFKKAGT 180
Query: 183 YDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLTP 242
YDPKRLLGVTMLDVVRANTFVAEVLGLDPR+VDVPVVGGHAGVTILPLLSQVKP S T
Sbjct: 181 YDPKRLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPSSFTQ 240
Query: 243 TEIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFADACLRGLRGDAGVIECAYVAS 302
EI YLTDRIQNGGTEVVEAK GAGSATLSMAYAA KFADACLRGLRGDAGVIECA+V+S
Sbjct: 241 EEISYLTDRIQNGGTEVVEAKAGAGSATLSMAYAAVKFADACLRGLRGDAGVIECAFVSS 300
Query: 303 TVTELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLEKAKKELAGSIQKGVSFVR 357
VTELPFFASKVRLGR GIEE+YSLGPLNEYER GLEKAKKELAGSI+KGVSF+R
Sbjct: 301 QVTELPFFASKVRLGRNGIEEVYSLGPLNEYERIGLEKAKKELAGSIEKGVSFIR 355
>pdb|1SMK|A Chain A, Mature And Translocatable Forms Of Glyoxysomal Malate
Dehydrogenase Have Different Activities And Stabilities
But Similar Crystal Structures
pdb|1SMK|B Chain B, Mature And Translocatable Forms Of Glyoxysomal Malate
Dehydrogenase Have Different Activities And Stabilities
But Similar Crystal Structures
pdb|1SMK|C Chain C, Mature And Translocatable Forms Of Glyoxysomal Malate
Dehydrogenase Have Different Activities And Stabilities
But Similar Crystal Structures
pdb|1SMK|D Chain D, Mature And Translocatable Forms Of Glyoxysomal Malate
Dehydrogenase Have Different Activities And Stabilities
But Similar Crystal Structures
pdb|1SMK|E Chain E, Mature And Translocatable Forms Of Glyoxysomal Malate
Dehydrogenase Have Different Activities And Stabilities
But Similar Crystal Structures
pdb|1SMK|F Chain F, Mature And Translocatable Forms Of Glyoxysomal Malate
Dehydrogenase Have Different Activities And Stabilities
But Similar Crystal Structures
pdb|1SMK|G Chain G, Mature And Translocatable Forms Of Glyoxysomal Malate
Dehydrogenase Have Different Activities And Stabilities
But Similar Crystal Structures
pdb|1SMK|H Chain H, Mature And Translocatable Forms Of Glyoxysomal Malate
Dehydrogenase Have Different Activities And Stabilities
But Similar Crystal Structures
Length = 326
Score = 593 bits (1529), Expect = e-170, Method: Compositional matrix adjust.
Identities = 290/319 (90%), Positives = 303/319 (94%)
Query: 39 RAKGGSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAV 98
RAKGG+PGFKVA+LGAAGGIGQPLAMLMK+NPLVSVLHLYDVVN PGVTADISHMDT AV
Sbjct: 1 RAKGGAPGFKVAILGAAGGIGQPLAMLMKMNPLVSVLHLYDVVNAPGVTADISHMDTGAV 60
Query: 99 VRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAI 158
VRGFLGQQQLE ALTGMD++I+PAGVPRKPGMTRDDLF INAGIVKTLCEGIAKCCP+AI
Sbjct: 61 VRGFLGQQQLEAALTGMDLIIVPAGVPRKPGMTRDDLFKINAGIVKTLCEGIAKCCPRAI 120
Query: 159 VNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPV 218
VNLISNPVNSTVPIAAEVFKK GTYDPKRLLGVTMLDVVRANTFVAEVLGLDPR+VDVPV
Sbjct: 121 VNLISNPVNSTVPIAAEVFKKAGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPRDVDVPV 180
Query: 219 VGGHAGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAA 278
VGGHAGVTILPLLSQVKP S T EI YLTDRIQNGGTEVVEAK GAGSATLSMAYAA
Sbjct: 181 VGGHAGVTILPLLSQVKPPSSFTQEEISYLTDRIQNGGTEVVEAKAGAGSATLSMAYAAV 240
Query: 279 KFADACLRGLRGDAGVIECAYVASTVTELPFFASKVRLGRAGIEEIYSLGPLNEYERAGL 338
KFADACLRGLRGDAGVIECA+V+S VTELPFFASKVRLGR GIEE+YSLGPLNEYER GL
Sbjct: 241 KFADACLRGLRGDAGVIECAFVSSQVTELPFFASKVRLGRNGIEEVYSLGPLNEYERIGL 300
Query: 339 EKAKKELAGSIQKGVSFVR 357
EKAKKELAGSI+KGVSF+R
Sbjct: 301 EKAKKELAGSIEKGVSFIR 319
>pdb|2DFD|A Chain A, Crystal Structure Of Human Malate Dehydrogenase Type 2
pdb|2DFD|B Chain B, Crystal Structure Of Human Malate Dehydrogenase Type 2
pdb|2DFD|C Chain C, Crystal Structure Of Human Malate Dehydrogenase Type 2
pdb|2DFD|D Chain D, Crystal Structure Of Human Malate Dehydrogenase Type 2
Length = 342
Score = 364 bits (934), Expect = e-101, Method: Compositional matrix adjust.
Identities = 177/310 (57%), Positives = 231/310 (74%)
Query: 48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQ 107
KVAVLGA+GGIGQPL++L+K +PLVS L LYD+ +TPGV AD+SH++T A V+G+LG +Q
Sbjct: 30 KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIETKAAVKGYLGPEQ 89
Query: 108 LEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVN 167
L D L G D+V+IPAGVPRKPGMTRDDLFN NA IV TL A+ CP+A++ +I+NPVN
Sbjct: 90 LPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHCPEAMICVIANPVN 149
Query: 168 STVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTI 227
ST+PI AEVFKK G Y+P ++ GVT LD+VRANTFVAE+ GLDP V+VPV+GGHAG TI
Sbjct: 150 STIPITAEVFKKHGVYNPNKIFGVTTLDIVRANTFVAELKGLDPARVNVPVIGGHAGKTI 209
Query: 228 LPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFADACLRG 287
+PL+SQ P ++ LT RIQ GTEVV+AK GAGSATLSMAYA A+F + +
Sbjct: 210 IPLISQCTPKVDFPQDQLTALTGRIQEAGTEVVKAKAGAGSATLSMAYAGARFVFSLVDA 269
Query: 288 LRGDAGVIECAYVASTVTELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLEKAKKELAG 347
+ G GV+EC++V S TE +F++ + LG+ GIE+ +G ++ +E + A EL
Sbjct: 270 MNGKEGVVECSFVKSQETECTYFSTPLLLGKKGIEKNLGIGKVSSFEEKMISDAIPELKA 329
Query: 348 SIQKGVSFVR 357
SI+KG FV+
Sbjct: 330 SIKKGEDFVK 339
>pdb|1MLD|A Chain A, Refined Structure Of Mitochondrial Malate Dehydrogenase
From Porcine Heart And The Consensus Structure For
Dicarboxylic Acid Oxidoreductases
pdb|1MLD|B Chain B, Refined Structure Of Mitochondrial Malate Dehydrogenase
From Porcine Heart And The Consensus Structure For
Dicarboxylic Acid Oxidoreductases
pdb|1MLD|C Chain C, Refined Structure Of Mitochondrial Malate Dehydrogenase
From Porcine Heart And The Consensus Structure For
Dicarboxylic Acid Oxidoreductases
pdb|1MLD|D Chain D, Refined Structure Of Mitochondrial Malate Dehydrogenase
From Porcine Heart And The Consensus Structure For
Dicarboxylic Acid Oxidoreductases
Length = 314
Score = 363 bits (933), Expect = e-101, Method: Compositional matrix adjust.
Identities = 177/310 (57%), Positives = 230/310 (74%)
Query: 48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQ 107
KVAVLGA+GGIGQPL++L+K +PLVS L LYD+ +TPGV AD+SH++T A V+G+LG +Q
Sbjct: 2 KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIETRATVKGYLGPEQ 61
Query: 108 LEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVN 167
L D L G D+V+IPAGVPRKPGMTRDDLFN NA IV TL A+ CP A++ +ISNPVN
Sbjct: 62 LPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHCPDAMICIISNPVN 121
Query: 168 STVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTI 227
ST+PI AEVFKK G Y+P ++ GVT LD+VRAN FVAE+ GLDP V VPV+GGHAG TI
Sbjct: 122 STIPITAEVFKKHGVYNPNKIFGVTTLDIVRANAFVAELKGLDPARVSVPVIGGHAGKTI 181
Query: 228 LPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFADACLRG 287
+PL+SQ P ++ LT RIQ GTEVV+AK GAGSATLSMAYA A+F + +
Sbjct: 182 IPLISQCTPKVDFPQDQLSTLTGRIQEAGTEVVKAKAGAGSATLSMAYAGARFVFSLVDA 241
Query: 288 LRGDAGVIECAYVASTVTELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLEKAKKELAG 347
+ G GV+EC++V S T+ P+F++ + LG+ GIE+ +G ++ +E + +A EL
Sbjct: 242 MNGKEGVVECSFVKSQETDCPYFSTPLLLGKKGIEKNLGIGKISPFEEKMIAEAIPELKA 301
Query: 348 SIQKGVSFVR 357
SI+KG FV+
Sbjct: 302 SIKKGEEFVK 311
>pdb|2PWZ|A Chain A, Crystal Structure Of The Apo Form Of E.Coli Malate
Dehydrogenase
pdb|2PWZ|C Chain C, Crystal Structure Of The Apo Form Of E.Coli Malate
Dehydrogenase
pdb|2PWZ|E Chain E, Crystal Structure Of The Apo Form Of E.Coli Malate
Dehydrogenase
pdb|2PWZ|G Chain G, Crystal Structure Of The Apo Form Of E.Coli Malate
Dehydrogenase
pdb|3HHP|A Chain A, Malate Dehydrogenase Open Conformation
pdb|3HHP|B Chain B, Malate Dehydrogenase Open Conformation
pdb|3HHP|C Chain C, Malate Dehydrogenase Open Conformation
pdb|3HHP|D Chain D, Malate Dehydrogenase Open Conformation
Length = 312
Score = 326 bits (835), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 176/314 (56%), Positives = 216/314 (68%), Gaps = 4/314 (1%)
Query: 47 FKVAVLGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVN-TPGVTADISHMDTNAVVRGFLG 104
KVAVLGAAGGIGQ LA+L+K P S L LYD+ TPGV D+SH+ T ++GF G
Sbjct: 1 MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSG 60
Query: 105 QQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISN 164
+ AL G D+V+I AGV RKPGM R DLFN+NAGIVK L + +AK CPKA + +I+N
Sbjct: 61 EDA-TPALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGIITN 119
Query: 165 PVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAG 224
PVN+TV IAAEV KK G YD +L GVT LD++R+NTFVAE+ G P EV+VPV+GGH+G
Sbjct: 120 PVNTTVAIAAEVLKKAGVYDKNKLFGVTTLDIIRSNTFVAELKGKQPGEVEVPVIGGHSG 179
Query: 225 VTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFADAC 284
VTILPLLSQV P S T E+ LT RIQN GTEVVEAK G GSATLSM AAA+F +
Sbjct: 180 VTILPLLSQV-PGVSFTEQEVADLTKRIQNAGTEVVEAKAGGGSATLSMGQAAARFGLSL 238
Query: 285 LRGLRGDAGVIECAYVASTVTELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLEKAKKE 344
+R L+G+ GV+ECAYV FF+ + LG+ G+EE S+G L+ +E+ LE
Sbjct: 239 VRALQGEQGVVECAYVEGDGQYARFFSQPLLLGKNGVEERKSIGTLSAFEQNALEGMLDT 298
Query: 345 LAGSIQKGVSFVRK 358
L I G FV K
Sbjct: 299 LKKDIALGEEFVNK 312
>pdb|1EMD|A Chain A, Crystal Structure Of A Ternary Complex Of Escherichia Coli
Malate Dehydrogenase, Citrate And Nad At 1.9 Angstroms
Resolution
pdb|2CMD|A Chain A, The Crystal Structure Of E.Coli Malate Dehydrogenase: A
Complex Of The Apoenzyme And Citrate At 1.87 Angstroms
Resolution
Length = 312
Score = 326 bits (835), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 176/314 (56%), Positives = 216/314 (68%), Gaps = 4/314 (1%)
Query: 47 FKVAVLGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVN-TPGVTADISHMDTNAVVRGFLG 104
KVAVLGAAGGIGQ LA+L+K P S L LYD+ TPGV D+SH+ T ++GF G
Sbjct: 1 MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSG 60
Query: 105 QQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISN 164
+ AL G D+V+I AGV RKPGM R DLFN+NAGIVK L + +AK CPKA + +I+N
Sbjct: 61 EDA-TPALEGADVVLISAGVRRKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGIITN 119
Query: 165 PVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAG 224
PVN+TV IAAEV KK G YD +L GVT LD++R+NTFVAE+ G P EV+VPV+GGH+G
Sbjct: 120 PVNTTVAIAAEVLKKAGVYDKNKLFGVTTLDIIRSNTFVAELKGKQPGEVEVPVIGGHSG 179
Query: 225 VTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFADAC 284
VTILPLLSQV P S T E+ LT RIQN GTEVVEAK G GSATLSM AAA+F +
Sbjct: 180 VTILPLLSQV-PGVSFTEQEVADLTKRIQNAGTEVVEAKAGGGSATLSMGQAAARFGLSL 238
Query: 285 LRGLRGDAGVIECAYVASTVTELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLEKAKKE 344
+R L+G+ GV+ECAYV FF+ + LG+ G+EE S+G L+ +E+ LE
Sbjct: 239 VRALQGEQGVVECAYVEGDGQYARFFSQPLLLGKNGVEERKSIGTLSAFEQNALEGMLDT 298
Query: 345 LAGSIQKGVSFVRK 358
L I G FV K
Sbjct: 299 LKKDIALGQEFVNK 312
>pdb|1IB6|A Chain A, Crystal Structure Of R153c E. Coli Malate Dehydrogenase
pdb|1IB6|B Chain B, Crystal Structure Of R153c E. Coli Malate Dehydrogenase
pdb|1IB6|C Chain C, Crystal Structure Of R153c E. Coli Malate Dehydrogenase
pdb|1IB6|D Chain D, Crystal Structure Of R153c E. Coli Malate Dehydrogenase
pdb|1IE3|A Chain A, Crystal Structure Of R153c E. Coli Malate Dehydrogenase
pdb|1IE3|B Chain B, Crystal Structure Of R153c E. Coli Malate Dehydrogenase
pdb|1IE3|C Chain C, Crystal Structure Of R153c E. Coli Malate Dehydrogenase
pdb|1IE3|D Chain D, Crystal Structure Of R153c E. Coli Malate Dehydrogenase
Length = 312
Score = 322 bits (825), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 175/314 (55%), Positives = 215/314 (68%), Gaps = 4/314 (1%)
Query: 47 FKVAVLGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVN-TPGVTADISHMDTNAVVRGFLG 104
KVAVLGAAGGIGQ LA+L+K P S L LYD+ TPGV D+SH+ T ++GF G
Sbjct: 1 MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSG 60
Query: 105 QQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISN 164
+ AL G D+V+I AGV RKPGM R DLFN+NAGIVK L + +AK CPKA + +I+N
Sbjct: 61 EDA-TPALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGIITN 119
Query: 165 PVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAG 224
PVN+TV IAAEV KK G YD +L GVT LD++ +NTFVAE+ G P EV+VPV+GGH+G
Sbjct: 120 PVNTTVAIAAEVLKKAGVYDKNKLFGVTTLDIICSNTFVAELKGKQPGEVEVPVIGGHSG 179
Query: 225 VTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFADAC 284
VTILPLLSQV P S T E+ LT RIQN GTEVVEAK G GSATLSM AAA+F +
Sbjct: 180 VTILPLLSQV-PGVSFTEQEVADLTKRIQNAGTEVVEAKAGGGSATLSMGQAAARFGLSL 238
Query: 285 LRGLRGDAGVIECAYVASTVTELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLEKAKKE 344
+R L+G+ GV+ECAYV FF+ + LG+ G+EE S+G L+ +E+ LE
Sbjct: 239 VRALQGEQGVVECAYVEGDGQYARFFSQPLLLGKNGVEERKSIGTLSAFEQNALEGMLDT 298
Query: 345 LAGSIQKGVSFVRK 358
L I G FV K
Sbjct: 299 LKKDIALGQEFVNK 312
>pdb|4E0B|A Chain A, 2.17 Angstrom Resolution Crystal Structure Of Malate
Dehydrogenase From Vibrio Vulnificus Cmcp6
pdb|4E0B|B Chain B, 2.17 Angstrom Resolution Crystal Structure Of Malate
Dehydrogenase From Vibrio Vulnificus Cmcp6
pdb|4E0B|C Chain C, 2.17 Angstrom Resolution Crystal Structure Of Malate
Dehydrogenase From Vibrio Vulnificus Cmcp6
pdb|4E0B|D Chain D, 2.17 Angstrom Resolution Crystal Structure Of Malate
Dehydrogenase From Vibrio Vulnificus Cmcp6
Length = 313
Score = 315 bits (807), Expect = 3e-86, Method: Compositional matrix adjust.
Identities = 175/316 (55%), Positives = 218/316 (68%), Gaps = 5/316 (1%)
Query: 44 SPGFKVAVLGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVN-TPGVTADISHMDTNAVVRG 101
S KVAV+GAAGGIGQ LA+L+K P S L LYD+ TPGV AD+SH+ T+ ++G
Sbjct: 1 SNAXKVAVIGAAGGIGQALALLLKNRLPAGSDLALYDIAPVTPGVAADLSHIPTHVSIKG 60
Query: 102 FLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNL 161
+ G+ AL G D+V+I AGV RKPG R DLFN+NAGIVK+L E IA CP A + +
Sbjct: 61 YAGEDPTP-ALEGADVVLISAGVARKPGXDRADLFNVNAGIVKSLAERIAVVCPNACIGI 119
Query: 162 ISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGG 221
I+NPVN+TVPIAAEV KK G YD ++L GVT LDV+R+ TFVAE+ G DP EV VPV+GG
Sbjct: 120 ITNPVNTTVPIAAEVLKKAGVYDKRKLFGVTTLDVIRSETFVAELKGQDPGEVRVPVIGG 179
Query: 222 HAGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFA 281
H+GVTILPLLSQV+ + EI LT RIQN GTEVVEAK G GSATLS AA +F
Sbjct: 180 HSGVTILPLLSQVE-GVEFSDEEIAALTKRIQNAGTEVVEAKAGGGSATLSXGQAACRFG 238
Query: 282 DACLRGLRGDAGVIECAYVASTVTELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLEKA 341
A ++ L+G+ VIE AYV FFA V+LG+ G+EEI G L+++E+A L+
Sbjct: 239 LALVKALQGEE-VIEYAYVEGNGEHASFFAQPVKLGKEGVEEILPYGELSDFEKAALDGX 297
Query: 342 KKELAGSIQKGVSFVR 357
+ L IQ GV FV+
Sbjct: 298 LETLNSDIQIGVDFVK 313
>pdb|1GUZ|A Chain A, Structural Basis For Thermophilic Protein Stability:
Structures Of Thermophilic And Mesophilic Malate
Dehydrogenases
pdb|1GUZ|B Chain B, Structural Basis For Thermophilic Protein Stability:
Structures Of Thermophilic And Mesophilic Malate
Dehydrogenases
pdb|1GUZ|C Chain C, Structural Basis For Thermophilic Protein Stability:
Structures Of Thermophilic And Mesophilic Malate
Dehydrogenases
pdb|1GUZ|D Chain D, Structural Basis For Thermophilic Protein Stability:
Structures Of Thermophilic And Mesophilic Malate
Dehydrogenases
Length = 310
Score = 109 bits (273), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 103/322 (31%), Positives = 155/322 (48%), Gaps = 51/322 (15%)
Query: 47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISH------MDTNAV 98
K+ V+GA G +G A + L L L DVV G D+ DT
Sbjct: 1 MKITVIGA-GNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYESGPVGLFDTKVT 59
Query: 99 VRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAI 158
G D DIVII AG+PRKPGMTR+DL NAGIVK + + I K I
Sbjct: 60 -----GSNDYADTANS-DIVIITAGLPRKPGMTREDLLMKNAGIVKEVTDNIMKHSKNPI 113
Query: 159 VNLISNPVNSTVPIAAEVFKKVGTYDPK-RLLGVT-MLDVVRANTFVAEVLGLDPREVDV 216
+ ++SNP++ +A + + G PK R++G+ +LD R +F+A LG+ ++++
Sbjct: 114 IIVVSNPLDIMTHVA---WVRSGL--PKERVIGMAGVLDAARFRSFIAMELGVSMQDINA 168
Query: 217 PVVGGHAGVTILPLLSQVK----PSCSLTPTE-IDYLTDRIQNGGTEVVEAKTGAGSATL 271
V+GGH G ++P++ P L P E ID L +R +NGG E+VE GSA
Sbjct: 169 CVLGGH-GDAMVPVVKYTTVAGIPISDLLPAETIDKLVERTRNGGAEIVE-HLKQGSAFY 226
Query: 272 SMAYAAAKFADA----------CLRGLRGDAGVIECAYVASTVTELPFFASKVRLGRAGI 321
+ A + + ++ C GL G G+ + F V+LGR G+
Sbjct: 227 APASSVVEMVESIVLDRKRVLPCAVGLEGQYGI-----------DKTFVGVPVKLGRNGV 275
Query: 322 EEIYSLGPLNEYERAGLEKAKK 343
E+IY + L++ + L+K+ K
Sbjct: 276 EQIYEIN-LDQADLDLLQKSAK 296
>pdb|1GV1|A Chain A, Structural Basis For Thermophilic Protein Stability:
Structures Of Thermophilic And Mesophilic Malate
Dehydrogenases
pdb|1GV1|B Chain B, Structural Basis For Thermophilic Protein Stability:
Structures Of Thermophilic And Mesophilic Malate
Dehydrogenases
pdb|1GV1|C Chain C, Structural Basis For Thermophilic Protein Stability:
Structures Of Thermophilic And Mesophilic Malate
Dehydrogenases
pdb|1GV1|D Chain D, Structural Basis For Thermophilic Protein Stability:
Structures Of Thermophilic And Mesophilic Malate
Dehydrogenases
Length = 310
Score = 109 bits (272), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 84/245 (34%), Positives = 131/245 (53%), Gaps = 36/245 (14%)
Query: 116 DIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAE 175
DIVII AG+PRKPGMTR+DL NAGIVK + + I K I+ ++SNP++ +A
Sbjct: 71 DIVIITAGLPRKPGMTREDLLMKNAGIVKEVTDNIMKHSKNPIIIVVSNPLDIMTHVA-- 128
Query: 176 VFKKVGTYDPK-RLLGVT-MLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQ 233
+ + G PK R++G+ +LD R +F+A LG+ ++++ V+GGH G ++P++
Sbjct: 129 -WVRSGL--PKERVIGMAGVLDAARFRSFIAMELGVSMQDINACVLGGH-GDAMVPVVKY 184
Query: 234 VK----PSCSLTPTE-IDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFADA----- 283
P L P E ID L +R +NGG E+VE GSA + A + + ++
Sbjct: 185 TTVAGIPISDLLPAETIDKLVERTRNGGAEIVE-HLKQGSAFYAPASSVVEMVESIVLDR 243
Query: 284 -----CLRGLRGDAGVIECAYVASTVTELPFFASKVRLGRAGIEEIYSLGPLNEYERAGL 338
C GL G G+ + F V+LGR G+E+IY + L++ + L
Sbjct: 244 KRVLPCAVGLEGQYGI-----------DKTFVGVPVKLGRNGVEQIYEIN-LDQADLDLL 291
Query: 339 EKAKK 343
+K+ K
Sbjct: 292 QKSAK 296
>pdb|3TL2|A Chain A, Crystal Structure Of Bacillus Anthracis Str. Ames Malate
Dehydrogenase In Closed Conformation
Length = 315
Score = 100 bits (249), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 97/309 (31%), Positives = 161/309 (52%), Gaps = 30/309 (9%)
Query: 48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDV--VNTPGVTADISHMDTNAVVRGF--- 102
KV+V+GA G G A L+ L V+ L D+ + P + ++ + V +GF
Sbjct: 10 KVSVIGA-GFTGATTAFLLAQKELADVV-LVDIPQLENPTKGKALDMLEASPV-QGFDAN 66
Query: 103 -LGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNL 161
+G D D+V+I AG+ RKPGM+RDDL N+ I+K++ IAK P AI+ +
Sbjct: 67 IIGTSDYADTADS-DVVVITAGIARKPGMSRDDLVATNSKIMKSITRDIAKHSPNAIIVV 125
Query: 162 ISNPVNSTVPIAAEVFKKVGTYDPKRLLGVT-MLDVVRANTFVAEVLGLDPREVDVPVVG 220
++NPV++ + VFK+ G + +R++G + +LD R TF+A+ L L +++ V+G
Sbjct: 126 LTNPVDA---MTYSVFKEAG-FPKERVIGQSGVLDTARFRTFIAQELNLSVKDITGFVLG 181
Query: 221 GHAGVTILPLLSQVK----PSCSLTPTE-IDYLTDRIQNGGTEVVEAKTGAGSATLSMAY 275
GH G ++PL+ P +L P E ++ + +R + GG E+V G GSA + A
Sbjct: 182 GH-GDDMVPLVRYSYAGGIPLETLIPKERLEAIVERTRKGGGEIV-GLLGNGSAYYAPAA 239
Query: 276 AAAKFADACLRGLRG---DAGVIECAYVASTVTELPFFASKVRLGRAGIEEIYSLGPLNE 332
+ + +A L+ R +E Y S + + V LG GIE+I L L +
Sbjct: 240 SLVEMTEAILKDQRRVLPAIAYLEGEYGYSDL----YLGVPVILGGNGIEKIIELELLAD 295
Query: 333 YERAGLEKA 341
E+ L+++
Sbjct: 296 -EKEALDRS 303
>pdb|3P7M|A Chain A, Structure Of Putative Lactate Dehydrogenase From
Francisella Tularensis Subsp. Tularensis Schu S4
pdb|3P7M|B Chain B, Structure Of Putative Lactate Dehydrogenase From
Francisella Tularensis Subsp. Tularensis Schu S4
pdb|3P7M|C Chain C, Structure Of Putative Lactate Dehydrogenase From
Francisella Tularensis Subsp. Tularensis Schu S4
pdb|3P7M|D Chain D, Structure Of Putative Lactate Dehydrogenase From
Francisella Tularensis Subsp. Tularensis Schu S4
Length = 321
Score = 100 bits (248), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 95/316 (30%), Positives = 150/316 (47%), Gaps = 45/316 (14%)
Query: 48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAV------VRG 101
K+ ++GA G IG LA L I L V+ L+D+ + + T + VRG
Sbjct: 7 KITLVGA-GNIGGTLAHLALIKQLGDVV-LFDIAQGXPNGKALDLLQTCPIEGVDFKVRG 64
Query: 102 FLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNL 161
+ LE++ D+VI+ AGVPRKPG +RDDL IN + +T+ EGI CP A V
Sbjct: 65 TNDYKDLENS----DVVIVTAGVPRKPGXSRDDLLGINIKVXQTVGEGIKHNCPNAFVIC 120
Query: 162 ISNPVNSTVPIAAEVFKKVGTYDPKRLLGVT-MLDVVRANTFVAEVLGLDPREVDVPVVG 220
I+NP++ I +K +++G +LD R TF+A+ L + ++V V G
Sbjct: 121 ITNPLD----IXVNXLQKFSGVPDNKIVGXAGVLDSARFRTFLADELNVSVQQVQAYVXG 176
Query: 221 GHAGVTILPL----------LSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSAT 270
GH G T +PL L Q+ L +D + R ++GG E+V A GSA
Sbjct: 177 GH-GDTXVPLTKXSNVAGVSLEQLVKEGKLKQERLDAIVSRTRSGGGEIV-ALLKTGSAY 234
Query: 271 LSMAYAAAKFADACLRGLRGDAGVIECAYVASTVTELPFFASKVRLGRAGIEEIYSLGPL 330
+ A A + A++ L+ + ++ C A+KV+ G G++E +G
Sbjct: 235 YAPAAAGIQXAESFLKDKK---XILPC-------------AAKVKAGXYGLDEDLFVGVP 278
Query: 331 NEYERAGLEKAKKELA 346
E G+ + E++
Sbjct: 279 TEISANGVRPIEVEIS 294
>pdb|2HJR|A Chain A, Crystal Structure Of Cryptosporidium Parvum Malate
Dehydrogenase
pdb|2HJR|B Chain B, Crystal Structure Of Cryptosporidium Parvum Malate
Dehydrogenase
pdb|2HJR|C Chain C, Crystal Structure Of Cryptosporidium Parvum Malate
Dehydrogenase
pdb|2HJR|D Chain D, Crystal Structure Of Cryptosporidium Parvum Malate
Dehydrogenase
pdb|2HJR|E Chain E, Crystal Structure Of Cryptosporidium Parvum Malate
Dehydrogenase
pdb|2HJR|F Chain F, Crystal Structure Of Cryptosporidium Parvum Malate
Dehydrogenase
pdb|2HJR|G Chain G, Crystal Structure Of Cryptosporidium Parvum Malate
Dehydrogenase
pdb|2HJR|H Chain H, Crystal Structure Of Cryptosporidium Parvum Malate
Dehydrogenase
pdb|2HJR|I Chain I, Crystal Structure Of Cryptosporidium Parvum Malate
Dehydrogenase
pdb|2HJR|J Chain J, Crystal Structure Of Cryptosporidium Parvum Malate
Dehydrogenase
pdb|2HJR|K Chain K, Crystal Structure Of Cryptosporidium Parvum Malate
Dehydrogenase
pdb|2HJR|L Chain L, Crystal Structure Of Cryptosporidium Parvum Malate
Dehydrogenase
Length = 328
Score = 99.8 bits (247), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 95/321 (29%), Positives = 157/321 (48%), Gaps = 33/321 (10%)
Query: 48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISH-MDTNAVVRGFLG 104
K++++GA G IG +A+L+ L V +++D++ G D++H M G
Sbjct: 16 KISIIGA-GQIGSTIALLLGQKDLGDV-YMFDIIEGVPQGKALDLNHCMALIGSPAKIFG 73
Query: 105 QQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISN 164
+ E L D+VII AGVPRKP MTR DL +NA IV ++ E + K CP A V I+N
Sbjct: 74 ENNYE-YLQNSDVVIITAGVPRKPNMTRSDLLTVNAKIVGSVAENVGKYCPNAFVICITN 132
Query: 165 PVNSTVPIAAEVFKKVGTYDPKRLLGVT-MLDVVRANTFVAEVLGLDPREVDVPVVGGHA 223
P+++ V FK+ ++ G++ +LD R ++ LG+ P +V VVGGH
Sbjct: 133 PLDAMV----YYFKEKSGIPANKVCGMSGVLDSARFRCNLSRALGVKPSDVSAIVVGGH- 187
Query: 224 GVTILPLLSQVK----------PSCSLTPTEIDYLTDRIQNGGTEVVE-AKTGAGSATLS 272
G ++PL S V +T ++I+ + + GG E+VE KTG+ +
Sbjct: 188 GDEMIPLTSSVTIGGILLSDFVEQGKITHSQINEIIKKTAFGGGEIVELLKTGS-----A 242
Query: 273 MAYAAAKFADACLRGLRGDAGVIECAYVAS---TVTELPFFASKVRLGRAGIEEIYSLGP 329
AA L+ V+ C+ + V L F V +G+ GIE++ +
Sbjct: 243 FYAPAASAVAMAQAYLKDSKSVLVCSTYLTGQYNVNNL-FVGVPVVIGKNGIEDVVIVN- 300
Query: 330 LNEYERAGLEKAKKELAGSIQ 350
L++ E++ K+ + + +Q
Sbjct: 301 LSDDEKSLFSKSVESIQNLVQ 321
>pdb|3GVH|A Chain A, Crystal Structure Of LactateMALATE DEHYDROGENASE FROM
Brucella Melitensis
pdb|3GVH|B Chain B, Crystal Structure Of LactateMALATE DEHYDROGENASE FROM
Brucella Melitensis
pdb|3GVH|C Chain C, Crystal Structure Of LactateMALATE DEHYDROGENASE FROM
Brucella Melitensis
pdb|3GVH|D Chain D, Crystal Structure Of LactateMALATE DEHYDROGENASE FROM
Brucella Melitensis
pdb|3GVI|A Chain A, Crystal Structure Of LactateMALATE DEHYDROGENASE FROM
Brucella Melitensis In Complex With Adp
pdb|3GVI|B Chain B, Crystal Structure Of LactateMALATE DEHYDROGENASE FROM
Brucella Melitensis In Complex With Adp
pdb|3GVI|C Chain C, Crystal Structure Of LactateMALATE DEHYDROGENASE FROM
Brucella Melitensis In Complex With Adp
pdb|3GVI|D Chain D, Crystal Structure Of LactateMALATE DEHYDROGENASE FROM
Brucella Melitensis In Complex With Adp
pdb|3GVI|E Chain E, Crystal Structure Of LactateMALATE DEHYDROGENASE FROM
Brucella Melitensis In Complex With Adp
pdb|3GVI|F Chain F, Crystal Structure Of LactateMALATE DEHYDROGENASE FROM
Brucella Melitensis In Complex With Adp
Length = 324
Score = 95.5 bits (236), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 98/323 (30%), Positives = 156/323 (48%), Gaps = 43/323 (13%)
Query: 48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TP-GVTADISHMD-TNAVVRGFLG 104
K+A++G+ G IG LA L + L V+ L+D+ TP G DI+ + F G
Sbjct: 9 KIALIGS-GMIGGTLAHLAGLKELGDVV-LFDIAEGTPQGKGLDIAESSPVDGFDAKFTG 66
Query: 105 QQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISN 164
A+ G D+VI+ AGVPRKPGM+RDDL IN +++ + GI K P+A V I+N
Sbjct: 67 ANDYA-AIEGADVVIVTAGVPRKPGMSRDDLLGINLKVMEQVGAGIKKYAPEAFVICITN 125
Query: 165 PVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAG 224
P+++ V A + F + + + GV LD R F++E + +V V V+GGH
Sbjct: 126 PLDAMV-WALQKFSGLPAHKVVGMAGV--LDSARFRYFLSEEFNVSVEDVTVFVLGGHGD 182
Query: 225 VTI----------LPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMA 274
+ +PL VK + + ++D + R ++GG E+V GSA + A
Sbjct: 183 SMVPLARYSTVAGIPLPDLVKMGWT-SQDKLDKIIQRTRDGGAEIV-GLLKTGSAFYAPA 240
Query: 275 YAAAKFADACLRG----------LRGDAGVIECAYVASTVTELPFFASKVRLGRAGIEEI 324
+A + A++ L+ L G GV + TV +G G+E I
Sbjct: 241 ASAIQMAESYLKDKKRVLPVAAQLSGQYGVKDMYVGVPTV-----------IGANGVERI 289
Query: 325 YSLGPLNEYERAGLEKAKKELAG 347
+ L++ E+A +K+ +AG
Sbjct: 290 IEI-DLDKDEKAQFDKSVASVAG 311
>pdb|1UXI|A Chain A, Large Improvement In The Thermal Stability Of A Tetrameric
Malate Dehydrogenase By Single Point Mutations At The
Dimer-Dimer Interface
pdb|1UXI|B Chain B, Large Improvement In The Thermal Stability Of A Tetrameric
Malate Dehydrogenase By Single Point Mutations At The
Dimer-Dimer Interface
pdb|1UXJ|A Chain A, Large Improvement In The Thermal Stability Of A Tetrameric
Malate Dehydrogenase By Single Point Mutations At The
Dimer-dimer Interface
pdb|1UXJ|C Chain C, Large Improvement In The Thermal Stability Of A Tetrameric
Malate Dehydrogenase By Single Point Mutations At The
Dimer-dimer Interface
Length = 309
Score = 93.6 bits (231), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 76/244 (31%), Positives = 131/244 (53%), Gaps = 20/244 (8%)
Query: 116 DIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAE 175
D++++ +G PRKPGM+R+DL +NA I + A P A++ +++NP+++ +AAE
Sbjct: 72 DVIVVTSGAPRKPGMSREDLIKVNADITRACISQAAPLSPNAVIIMVNNPLDAMTYLAAE 131
Query: 176 VFKKVGTYDPKRLLGVT-MLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPL---- 230
V + +R++G +LD R TF+A G+ ++V ++GGH G ++PL
Sbjct: 132 ----VSGFPKERVIGQAGVLDAARYRTFIAMEAGVSVKDVQAMLMGGH-GDEMVPLPRFS 186
Query: 231 -LSQVKPSCSLTPTEIDYLTDRIQNGGTEVVE-AKTGAGSATLSMAYAAAKFADACLRGL 288
+S + S + P + + +R + GG E+V KT GSA + A A A+ +A L+
Sbjct: 187 TISGIPVSEFIAPDRLAQIVERTRKGGGEIVNLLKT--GSAYYAPAAATAQMVEAVLKDK 244
Query: 289 RGDAGVIECAYVAST--VTELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLEKAKKELA 346
+ V AY+ + ++ +F V LG G+E+I L PLNE E A L + K +
Sbjct: 245 KRVMPV--AAYLTGQYGLNDI-YFGVPVILGAGGVEKILEL-PLNEEEMALLNASAKAVR 300
Query: 347 GSIQ 350
++
Sbjct: 301 ATLD 304
>pdb|1GV0|A Chain A, Structural Basis For Thermophilic Protein Stability:
Structures Of Thermophilic And Mesophilic Malate
Dehydrogenases
pdb|1GV0|B Chain B, Structural Basis For Thermophilic Protein Stability:
Structures Of Thermophilic And Mesophilic Malate
Dehydrogenases
Length = 310
Score = 93.6 bits (231), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 97/322 (30%), Positives = 150/322 (46%), Gaps = 51/322 (15%)
Query: 47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISH------MDTNAV 98
K+ V+GA G +G A + L L L DVV G D+ DT
Sbjct: 1 MKITVIGA-GNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYESGPVGLFDTKVT 59
Query: 99 VRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAI 158
G D DIV+I AG+PRKPGMTR+DL ++NAGIV+ + I + I
Sbjct: 60 -----GSNDYADTANS-DIVVITAGLPRKPGMTREDLLSMNAGIVREVTGRIMEHSKNPI 113
Query: 159 VNLISNPVNSTVPIAAEVFKKVGTYDPK-RLLGVT-MLDVVRANTFVAEVLGLDPREVDV 216
+ ++SNP++ +A ++K G PK R++G+ +LD R +F+A LG+ ++V
Sbjct: 114 IVVVSNPLDIMTHVA---WQKSGL--PKERVIGMAGVLDSARFRSFIAMELGVSMQDVTA 168
Query: 217 PVVGGHAGVTILPLLSQVK----PSCSLTPTE-IDYLTDRIQNGGTEVVEAKTGAGSATL 271
V+GGH G ++P++ P L E I L +R + GG E+V GSA
Sbjct: 169 CVLGGH-GDAMVPVVKYTTVAGIPVADLISAERIAELVERTRTGGAEIVN-HLKQGSAFY 226
Query: 272 SMAYAAAKFADA----------CLRGLRGDAGVIECAYVASTVTELPFFASKVRLGRAGI 321
S A + + ++ C L G G+ + F V+LG+ G+
Sbjct: 227 SPATSVVEMVESIVLDRKRVLTCAVSLDGQYGI-----------DGTFVGVPVKLGKNGV 275
Query: 322 EEIYSLGPLNEYERAGLEKAKK 343
E IY + L++ + L+K+ K
Sbjct: 276 EHIYEI-KLDQSDLDLLQKSAK 296
>pdb|1UXH|A Chain A, Large Improvement In The Thermal Stability Of A Tetrameric
Malate Dehydrogenase By Single Point Mutations At The
Dimer-Dimer Interface
pdb|1UXH|B Chain B, Large Improvement In The Thermal Stability Of A Tetrameric
Malate Dehydrogenase By Single Point Mutations At The
Dimer-Dimer Interface
pdb|1UXK|A Chain A, Large Improvement In The Thermal Stability Of A Tetrameric
Malate Dehydrogenase By Single Point Mutations At The
Dimer-dimer Interface
pdb|1UXK|C Chain C, Large Improvement In The Thermal Stability Of A Tetrameric
Malate Dehydrogenase By Single Point Mutations At The
Dimer-dimer Interface
Length = 309
Score = 93.2 bits (230), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 76/243 (31%), Positives = 131/243 (53%), Gaps = 20/243 (8%)
Query: 116 DIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAE 175
D++++ +G PRKPGM+R+DL +NA I + A P A++ +++NP+++ +AAE
Sbjct: 72 DVIVVTSGAPRKPGMSREDLIKVNADITRACISQAAPLSPNAVIIMVNNPLDAMTYLAAE 131
Query: 176 VFKKVGTYDPKRLLGVT-MLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPL---- 230
V + +R++G +LD R TF+A G+ ++V ++GGH G ++PL
Sbjct: 132 ----VSGFPKERVIGQAGVLDAARYRTFIAMEAGVSVQDVQAMLMGGH-GDEMVPLPRFS 186
Query: 231 -LSQVKPSCSLTPTEIDYLTDRIQNGGTEVVE-AKTGAGSATLSMAYAAAKFADACLRGL 288
+S + S + P + + +R + GG E+V KT GSA + A A A+ +A L+
Sbjct: 187 TISGIPVSEFIAPDRLAQIVERTRKGGGEIVNLLKT--GSAYYAPAAATAQMVEAVLKDK 244
Query: 289 RGDAGVIECAYVAST--VTELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLEKAKKELA 346
+ V AY+ + ++ +F V LG G+E+I L PLNE E A L + K +
Sbjct: 245 KRVMPV--AAYLTGQYGLNDI-YFGVPVILGAGGVEKILEL-PLNEEEMALLNASAKAVR 300
Query: 347 GSI 349
++
Sbjct: 301 ATL 303
>pdb|1GUY|A Chain A, Structural Basis For Thermophilic Protein Stability:
Structures Of Thermophilic And Mesophilic Malate
Dehydrogenases
pdb|1GUY|C Chain C, Structural Basis For Thermophilic Protein Stability:
Structures Of Thermophilic And Mesophilic Malate
Dehydrogenases
pdb|1UXG|A Chain A, Large Improvement In The Thermal Stability Of A Tetrameric
Malate Dehydrogenase By Single Point Mutations At The
Dimer-Dimer Interface.
pdb|1UXG|B Chain B, Large Improvement In The Thermal Stability Of A Tetrameric
Malate Dehydrogenase By Single Point Mutations At The
Dimer-Dimer Interface
Length = 309
Score = 92.8 bits (229), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 76/244 (31%), Positives = 130/244 (53%), Gaps = 20/244 (8%)
Query: 116 DIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAE 175
D++++ +G PRKPGM+R+DL +NA I + A P A++ +++NP+++ +AAE
Sbjct: 72 DVIVVTSGAPRKPGMSREDLIKVNADITRACISQAAPLSPNAVIIMVNNPLDAMTYLAAE 131
Query: 176 VFKKVGTYDPKRLLGVT-MLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPL---- 230
V + +R++G +LD R TF+A G+ +V ++GGH G ++PL
Sbjct: 132 ----VSGFPKERVIGQAGVLDAARYRTFIAMEAGVSVEDVQAMLMGGH-GDEMVPLPRFS 186
Query: 231 -LSQVKPSCSLTPTEIDYLTDRIQNGGTEVVE-AKTGAGSATLSMAYAAAKFADACLRGL 288
+S + S + P + + +R + GG E+V KT GSA + A A A+ +A L+
Sbjct: 187 TISGIPVSEFIAPDRLAQIVERTRKGGGEIVNLLKT--GSAYYAPAAATAQMVEAVLKDK 244
Query: 289 RGDAGVIECAYVAST--VTELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLEKAKKELA 346
+ V AY+ + ++ +F V LG G+E+I L PLNE E A L + K +
Sbjct: 245 KRVMPV--AAYLTGQYGLNDI-YFGVPVILGAGGVEKILEL-PLNEEEMALLNASAKAVR 300
Query: 347 GSIQ 350
++
Sbjct: 301 ATLD 304
>pdb|1UR5|A Chain A, Stabilization Of A Tetrameric Malate Dehydrogenase By
Introduction Of A Disulfide Bridge At The DimerDIMER
Interface
pdb|1UR5|C Chain C, Stabilization Of A Tetrameric Malate Dehydrogenase By
Introduction Of A Disulfide Bridge At The DimerDIMER
Interface
Length = 309
Score = 92.4 bits (228), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 76/244 (31%), Positives = 130/244 (53%), Gaps = 20/244 (8%)
Query: 116 DIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAE 175
D++++ +G PRKPGM+R+DL +NA I + A P A++ +++NP+++ +AAE
Sbjct: 72 DVIVVTSGAPRKPGMSREDLIKVNADITRACISQAAPLSPNAVIIMVNNPLDAMTYLAAE 131
Query: 176 VFKKVGTYDPKRLLGVT-MLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPL---- 230
V + +R++G +LD R TF+A G+ +V ++GGH G ++PL
Sbjct: 132 ----VSGFPKERVIGQAGVLDAARYRTFIAMEAGVSVEDVQAMLMGGH-GDEMVPLPRFS 186
Query: 231 -LSQVKPSCSLTPTEIDYLTDRIQNGGTEVVE-AKTGAGSATLSMAYAAAKFADACLRGL 288
+S + S + P + + +R + GG E+V KT GSA + A A A+ +A L+
Sbjct: 187 CISGIPVSEFIAPDRLAQIVERTRKGGGEIVNLLKT--GSAYYAPAAATAQMVEAVLKDK 244
Query: 289 RGDAGVIECAYVAST--VTELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLEKAKKELA 346
+ V AY+ + ++ +F V LG G+E+I L PLNE E A L + K +
Sbjct: 245 KRVMPV--AAYLTGQYGLNDI-YFGVPVILGAGGVEKILEL-PLNEEEMALLNASAKAVR 300
Query: 347 GSIQ 350
++
Sbjct: 301 ATLD 304
>pdb|1PZE|A Chain A, T.gondii Ldh1 Apo Form
pdb|1PZF|A Chain A, T.gondii Ldh1 Ternary Complex With Apad+ And Oxalate
pdb|1PZF|B Chain B, T.gondii Ldh1 Ternary Complex With Apad+ And Oxalate
pdb|1PZF|C Chain C, T.gondii Ldh1 Ternary Complex With Apad+ And Oxalate
pdb|1PZF|D Chain D, T.gondii Ldh1 Ternary Complex With Apad+ And Oxalate
pdb|1PZH|A Chain A, T.Gondii Ldh1 Ternary Complex With Nad And Oxalate
pdb|1PZH|B Chain B, T.Gondii Ldh1 Ternary Complex With Nad And Oxalate
pdb|1PZH|C Chain C, T.Gondii Ldh1 Ternary Complex With Nad And Oxalate
pdb|1PZH|D Chain D, T.Gondii Ldh1 Ternary Complex With Nad And Oxalate
Length = 331
Score = 88.6 bits (218), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 67/200 (33%), Positives = 105/200 (52%), Gaps = 24/200 (12%)
Query: 48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHM----DTNAVVRG 101
KVA++G+ G IG + L + L V+ LYDVV G D+SH+ DTN VR
Sbjct: 11 KVAMIGS-GMIGGTMGYLCALRELADVV-LYDVVKGMPEGKALDLSHVTSVVDTNVSVRA 68
Query: 102 FLGQQQLEDALTGMDIVIIPAGVPRKPG-----MTRDDLFNINAGIVKTLCEGIAKCCPK 156
+ E ALTG D VI+ AG+ + PG +R+DL N+ I++ + + I K CPK
Sbjct: 69 ---EYSYEAALTGADCVIVTAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYCPK 125
Query: 157 AIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLG--VTMLDVVRANTFVAEVLGLDPREV 214
+ +++NP++ V + E + P ++ MLD R +VA+ L + PR+V
Sbjct: 126 TFIIVVTNPLDCMVKVMCE-----ASGVPTNMICGMACMLDSGRFRRYVADALSVSPRDV 180
Query: 215 DVPVVGGHAGVTILPLLSQV 234
V+G H G ++PL+ +
Sbjct: 181 QATVIGTH-GDCMVPLVRYI 199
>pdb|3OM9|A Chain A, T. Gondii Bradyzoite-Specific Ldh (Ldh1) In Complex With
Nad And Oxq
pdb|3OM9|B Chain B, T. Gondii Bradyzoite-Specific Ldh (Ldh1) In Complex With
Nad And Oxq
pdb|3OM9|C Chain C, T. Gondii Bradyzoite-Specific Ldh (Ldh1) In Complex With
Nad And Oxq
pdb|3OM9|D Chain D, T. Gondii Bradyzoite-Specific Ldh (Ldh1) In Complex With
Nad And Oxq
Length = 329
Score = 88.6 bits (218), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 67/200 (33%), Positives = 105/200 (52%), Gaps = 24/200 (12%)
Query: 48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHM----DTNAVVRG 101
KVA++G+ G IG + L + L V+ LYDVV G D+SH+ DTN VR
Sbjct: 9 KVAMIGS-GMIGGTMGYLCALRELADVV-LYDVVKGMPEGKALDLSHVTSVVDTNVSVRA 66
Query: 102 FLGQQQLEDALTGMDIVIIPAGVPRKPG-----MTRDDLFNINAGIVKTLCEGIAKCCPK 156
+ E ALTG D VI+ AG+ + PG +R+DL N+ I++ + + I K CPK
Sbjct: 67 ---EYSYEAALTGADCVIVTAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYCPK 123
Query: 157 AIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLG--VTMLDVVRANTFVAEVLGLDPREV 214
+ +++NP++ V + E + P ++ MLD R +VA+ L + PR+V
Sbjct: 124 TFIIVVTNPLDCMVKVMCE-----ASGVPTNMICGMACMLDSGRFRRYVADALSVSPRDV 178
Query: 215 DVPVVGGHAGVTILPLLSQV 234
V+G H G ++PL+ +
Sbjct: 179 QATVIGTH-GDCMVPLVRYI 197
>pdb|1PZG|A Chain A, T.Gondii Ldh1 Complexed With Apad And Sulfate At 1.6
Angstroms
pdb|1PZG|B Chain B, T.Gondii Ldh1 Complexed With Apad And Sulfate At 1.6
Angstroms
pdb|1PZG|C Chain C, T.Gondii Ldh1 Complexed With Apad And Sulfate At 1.6
Angstroms
pdb|1PZG|D Chain D, T.Gondii Ldh1 Complexed With Apad And Sulfate At 1.6
Angstroms
Length = 331
Score = 88.2 bits (217), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 67/200 (33%), Positives = 105/200 (52%), Gaps = 24/200 (12%)
Query: 48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHM----DTNAVVRG 101
KVA++G+ G IG + L + L V+ LYDVV G D+SH+ DTN VR
Sbjct: 11 KVAMIGS-GMIGGTMGYLCALRELADVV-LYDVVKGMPEGKALDLSHVTSVVDTNVSVRA 68
Query: 102 FLGQQQLEDALTGMDIVIIPAGVPRKPG-----MTRDDLFNINAGIVKTLCEGIAKCCPK 156
+ E ALTG D VI+ AG+ + PG +R+DL N+ I++ + + I K CPK
Sbjct: 69 ---EYSYEAALTGADCVIVTAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYCPK 125
Query: 157 AIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLG--VTMLDVVRANTFVAEVLGLDPREV 214
+ +++NP++ V + E + P ++ MLD R +VA+ L + PR+V
Sbjct: 126 TFIIVVTNPLDCMVKVMXE-----ASGVPTNMICGMACMLDSGRFRRYVADALSVSPRDV 180
Query: 215 DVPVVGGHAGVTILPLLSQV 234
V+G H G ++PL+ +
Sbjct: 181 QATVIGTH-GDCMVPLVRYI 199
>pdb|1U4O|A Chain A, Plasmodium Falciparum Lactate Dehydrogenase Complexed With
2,6- Naphthalenedicarboxylic Acid
pdb|1U4S|A Chain A, Plasmodium Falciparum Lactate Dehydrogenase Complexed With
2,6- Naphthalenedisulphonic Acid
pdb|1U5A|A Chain A, Plasmodium Falciparum Lactate Dehydrogenase Complexed With
3,5- Dihydroxy-2-Naphthoic Acid
pdb|1U5C|A Chain A, Plasmodium Falciparum Lactate Dehydrogenase Complexed With
3,7- Dihydroxynaphthalene-2-Carboxylic Acid And Nad+
pdb|2A94|A Chain A, Structure Of Plasmodium Falciparum Lactate Dehydrogenase
Complexed To Apadh
Length = 321
Score = 86.7 bits (213), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 87/322 (27%), Positives = 152/322 (47%), Gaps = 36/322 (11%)
Query: 44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVV-NTP-GVTADISHMDTNAVVRG 101
+P K+ ++G+ G IG +A L+ L V+ L+D+V N P G D SH + A
Sbjct: 1 APKAKIVLVGS-GMIGGVMATLIVQKNLGDVV-LFDIVKNMPHGKALDTSHTNVMAYSNC 58
Query: 102 FLGQQQLEDALTGMDIVIIPAGVPRKPG-----MTRDDLFNINAGIVKTLCEGIAKCCPK 156
+ D L G D+VI+ AG + PG RDDL +N I+ + I K CP
Sbjct: 59 KVSGSNTYDDLAGADVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNCPN 118
Query: 157 AIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVD 215
A + +++NPV+ V ++ + +++G+ +LD R ++++ L + PR+V+
Sbjct: 119 AFIIVVTNPVDVMV----QLLHQHSGVPKNKIIGLGGVLDTSRLKYYISQKLNVCPRDVN 174
Query: 216 VPVVGGHAGVTIL----------PLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTG 265
+VG H +L PL + ++ E++ + DR N E+V
Sbjct: 175 AHIVGAHGNKMVLLKRYITVGGIPLQEFINNKL-ISDAELEAIFDRTVNTALEIVNLH-- 231
Query: 266 AGSATLSMAYAAAKFADACLRGLRGD---AGVIECAYVASTVTELPFFASKVRLGRAGIE 322
S ++ A A + A++ L+ L+ + ++E Y S + F + V LG G+E
Sbjct: 232 -ASPYVAPAAAIIEMAESYLKDLKKVLICSTLLEGQYGHSDI----FGGTPVVLGANGVE 286
Query: 323 EIYSLGPLNEYERAGLEKAKKE 344
++ L LN E+A ++A E
Sbjct: 287 QVIEL-QLNSEEKAKFDEAIAE 307
>pdb|1T24|A Chain A, Plasmodium Falciparum Lactate Dehydrogenase Complexed With
Nad+ And 4- Hydroxy-1,2,5-Oxadiazole-3-Carboxylic Acid
pdb|1T25|A Chain A, Plasmodium Falciparum Lactate Dehydrogenase Complexed With
Nadh And 3- Hydroxyisoxazole-4-Carboxylic Acid
pdb|1T26|A Chain A, Plasmodium Falciparum Lactate Dehydrogenase Complexed With
Nadh And 4- Hydroxy-1,2,5-Thiadiazole-3-Carboxylic Acid
pdb|1T2C|A Chain A, Plasmodium Falciparum Lactate Dehydrogenase Complexed With
Nadh
pdb|1T2D|A Chain A, Plasmodium Falciparum Lactate Dehydrogenase Complexed With
Nad+ And Oxalate
pdb|2X8L|A Chain A, Plasmodium Falciparum Lactate Dehydrogenase Apo Structure
pdb|4B7U|A Chain A, Plasmodium Falciparum L-Lactate Dehydrogenase Complexed
With Bicine
pdb|4B7U|B Chain B, Plasmodium Falciparum L-Lactate Dehydrogenase Complexed
With Bicine
pdb|4B7U|C Chain C, Plasmodium Falciparum L-Lactate Dehydrogenase Complexed
With Bicine
pdb|4B7U|D Chain D, Plasmodium Falciparum L-Lactate Dehydrogenase Complexed
With Bicine
Length = 322
Score = 86.3 bits (212), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 87/322 (27%), Positives = 152/322 (47%), Gaps = 36/322 (11%)
Query: 44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVV-NTP-GVTADISHMDTNAVVRG 101
+P K+ ++G+ G IG +A L+ L V+ L+D+V N P G D SH + A
Sbjct: 2 APKAKIVLVGS-GMIGGVMATLIVQKNLGDVV-LFDIVKNMPHGKALDTSHTNVMAYSNC 59
Query: 102 FLGQQQLEDALTGMDIVIIPAGVPRKPG-----MTRDDLFNINAGIVKTLCEGIAKCCPK 156
+ D L G D+VI+ AG + PG RDDL +N I+ + I K CP
Sbjct: 60 KVSGSNTYDDLAGADVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNCPN 119
Query: 157 AIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVD 215
A + +++NPV+ V ++ + +++G+ +LD R ++++ L + PR+V+
Sbjct: 120 AFIIVVTNPVDVMV----QLLHQHSGVPKNKIIGLGGVLDTSRLKYYISQKLNVCPRDVN 175
Query: 216 VPVVGGHAGVTIL----------PLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTG 265
+VG H +L PL + ++ E++ + DR N E+V
Sbjct: 176 AHIVGAHGNKMVLLKRYITVGGIPLQEFINNKL-ISDAELEAIFDRTVNTALEIVNLH-- 232
Query: 266 AGSATLSMAYAAAKFADACLRGLRGD---AGVIECAYVASTVTELPFFASKVRLGRAGIE 322
S ++ A A + A++ L+ L+ + ++E Y S + F + V LG G+E
Sbjct: 233 -ASPYVAPAAAIIEMAESYLKDLKKVLICSTLLEGQYGHSDI----FGGTPVVLGANGVE 287
Query: 323 EIYSLGPLNEYERAGLEKAKKE 344
++ L LN E+A ++A E
Sbjct: 288 QVIEL-QLNSEEKAKFDEAIAE 308
>pdb|1CEQ|A Chain A, Chloroquine Binds In The Cofactor Binding Site Of
Plasmodium Falciparum Lactate Dehydrogenase
Length = 316
Score = 86.3 bits (212), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 87/322 (27%), Positives = 152/322 (47%), Gaps = 36/322 (11%)
Query: 44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVV-NTP-GVTADISHMDTNAVVRG 101
+P K+ ++G+ G IG +A L+ L V+ L+D+V N P G D SH + A
Sbjct: 2 APKAKIVLVGS-GMIGGVMATLIVQKNLGDVV-LFDIVKNMPHGKALDTSHTNVMAYSNC 59
Query: 102 FLGQQQLEDALTGMDIVIIPAGVPRKPG-----MTRDDLFNINAGIVKTLCEGIAKCCPK 156
+ D L G D+VI+ AG + PG RDDL +N I+ + I K CP
Sbjct: 60 KVSGSNTYDDLAGSDVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNCPN 119
Query: 157 AIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVD 215
A + +++NPV+ V ++ + +++G+ +LD R ++++ L + PR+V+
Sbjct: 120 AFIIVVTNPVDVMV----QLLHQHSGVPKNKIIGLGGVLDTSRLKYYISQKLNVCPRDVN 175
Query: 216 VPVVGGHAGVTIL----------PLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTG 265
+VG H +L PL + ++ E++ + DR N E+V
Sbjct: 176 AHIVGAHGNKMVLLKRYITVGGIPLQEFINNKL-ISDAELEAIFDRTVNTALEIVNLH-- 232
Query: 266 AGSATLSMAYAAAKFADACLRGLRGD---AGVIECAYVASTVTELPFFASKVRLGRAGIE 322
S ++ A A + A++ L+ L+ + ++E Y S + F + V LG G+E
Sbjct: 233 -ASPYVAPAAAIIEMAESYLKDLKKVLICSTLLEGQYGHSDI----FGGTPVVLGANGVE 287
Query: 323 EIYSLGPLNEYERAGLEKAKKE 344
++ L LN E+A ++A E
Sbjct: 288 QVIEL-QLNSEEKAKFDEAIAE 308
>pdb|1XIV|A Chain A, Plasmodium Falciparum Lactate Dehydrogenase Complexed With
2-({4-
Chloro-[hydroxy(Methoxy)methyl]cyclohexyl}amino)ethane-
1,1,2-Triol
Length = 323
Score = 86.3 bits (212), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 87/322 (27%), Positives = 152/322 (47%), Gaps = 36/322 (11%)
Query: 44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVV-NTP-GVTADISHMDTNAVVRG 101
+P K+ ++G+ G IG +A L+ L V+ L+D+V N P G D SH + A
Sbjct: 1 APKAKIVLVGS-GMIGGVMATLIVQKNLGDVV-LFDIVKNMPHGKALDTSHTNVMAYSNC 58
Query: 102 FLGQQQLEDALTGMDIVIIPAGVPRKPG-----MTRDDLFNINAGIVKTLCEGIAKCCPK 156
+ D L G D+VI+ AG + PG RDDL +N I+ + I K CP
Sbjct: 59 KVSGSNTYDDLAGADVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNCPN 118
Query: 157 AIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVD 215
A + +++NPV+ V ++ + +++G+ +LD R ++++ L + PR+V+
Sbjct: 119 AFIIVVTNPVDVMV----QLLHQHSGVPKNKIIGLGGVLDTSRLKYYISQKLNVCPRDVN 174
Query: 216 VPVVGGHAGVTIL----------PLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTG 265
+VG H +L PL + ++ E++ + DR N E+V
Sbjct: 175 AHIVGAHGNKMVLLKRYITVGGIPLQEFINNKL-ISDAELEAIFDRTVNTALEIVNLH-- 231
Query: 266 AGSATLSMAYAAAKFADACLRGLRGD---AGVIECAYVASTVTELPFFASKVRLGRAGIE 322
S ++ A A + A++ L+ L+ + ++E Y S + F + V LG G+E
Sbjct: 232 -ASPYVAPAAAIIEMAESYLKDLKKVLICSTLLEGQYGHSDI----FGGTPVVLGANGVE 286
Query: 323 EIYSLGPLNEYERAGLEKAKKE 344
++ L LN E+A ++A E
Sbjct: 287 QVIEL-QLNSEEKAKFDEAIAE 307
>pdb|1SOV|A Chain A, Toxoplasma Gondii Bradyzoite-specific Ldh (ldh2) Apo Form
pdb|1SOV|B Chain B, Toxoplasma Gondii Bradyzoite-specific Ldh (ldh2) Apo Form
pdb|1SOW|A Chain A, T. Gondii Bradyzoite-Specific Ldh (Ldh2) In Complex With
Nad And Oxalate
pdb|1SOW|B Chain B, T. Gondii Bradyzoite-Specific Ldh (Ldh2) In Complex With
Nad And Oxalate
Length = 328
Score = 84.7 bits (208), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 83/308 (26%), Positives = 141/308 (45%), Gaps = 31/308 (10%)
Query: 48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFLGQ 105
K+A++G+ G IG + L + L V+ L+DVV G D S + A +
Sbjct: 10 KIAMIGS-GMIGGTMGYLCVLRELADVV-LFDVVTGMPEGKALDDSQATSIADTNVSVTS 67
Query: 106 QQLEDALTGMDIVIIPAGVPRKPG-----MTRDDLFNINAGIVKTLCEGIAKCCPKAIVN 160
+ + G D+VII AG+ + PG +R+DL NA I++ + +G+ K CP A V
Sbjct: 68 ANQYEKIAGSDVVIITAGLTKVPGKSDKEWSRNDLLPFNAKIIREVAQGVKKYCPLAFVI 127
Query: 161 LISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVV 219
+++NP++ V + F + + G+ +LD R F+A+ L + PR++ V+
Sbjct: 128 VVTNPLDCMV----KCFHEASGLPKNMVCGMANVLDSARFRRFIADQLEISPRDIQATVI 183
Query: 220 GGHAGVTILPL----------LSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSA 269
G H G +LPL L + +T ++ + +R + G E+V G GSA
Sbjct: 184 GTH-GDHMLPLARYVTVNGFPLREFIKKGKMTEAKLAEIVERTKKAGGEIVRL-LGQGSA 241
Query: 270 TLSMAYAAAKFADACLRGLRGDAGVIECAYVASTVTELP--FFASKVRLGRAGIEEIYSL 327
+ A +A A A L+ + V+ C+ L F +G GIE++ L
Sbjct: 242 YYAPALSAITMAQAF---LKDEKRVLPCSVYCQGEYGLHDMFIGLPAVIGGGGIEQVIEL 298
Query: 328 GPLNEYER 335
+E +
Sbjct: 299 ELTHEEQE 306
>pdb|3CZM|A Chain A, T. Gondii Bradyzoite-Specific Ldh (Ldh2) In Complex With
Nad And Oxq
pdb|3CZM|B Chain B, T. Gondii Bradyzoite-Specific Ldh (Ldh2) In Complex With
Nad And Oxq
Length = 326
Score = 84.7 bits (208), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 83/308 (26%), Positives = 141/308 (45%), Gaps = 31/308 (10%)
Query: 48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFLGQ 105
K+A++G+ G IG + L + L V+ L+DVV G D S + A +
Sbjct: 10 KIAMIGS-GMIGGTMGYLCVLRELADVV-LFDVVTGMPEGKALDDSQATSIADTNVSVTS 67
Query: 106 QQLEDALTGMDIVIIPAGVPRKPG-----MTRDDLFNINAGIVKTLCEGIAKCCPKAIVN 160
+ + G D+VII AG+ + PG +R+DL NA I++ + +G+ K CP A V
Sbjct: 68 ANQYEKIAGSDVVIITAGLTKVPGKSDKEWSRNDLLPFNAKIIREVAQGVKKYCPLAFVI 127
Query: 161 LISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVV 219
+++NP++ V + F + + G+ +LD R F+A+ L + PR++ V+
Sbjct: 128 VVTNPLDCMV----KCFHEASGLPKNMVCGMANVLDSARFRRFIADQLEISPRDIQATVI 183
Query: 220 GGHAGVTILPL----------LSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSA 269
G H G +LPL L + +T ++ + +R + G E+V G GSA
Sbjct: 184 GTH-GDHMLPLARYVTVNGFPLREFIKKGKMTEAKLAEIVERTKKAGGEIVRL-LGQGSA 241
Query: 270 TLSMAYAAAKFADACLRGLRGDAGVIECAYVASTVTELP--FFASKVRLGRAGIEEIYSL 327
+ A +A A A L+ + V+ C+ L F +G GIE++ L
Sbjct: 242 YYAPALSAITMAQAF---LKDEKRVLPCSVYCQGEYGLHDMFIGLPAVIGGGGIEQVIEL 298
Query: 328 GPLNEYER 335
+E +
Sbjct: 299 ELTHEEQE 306
>pdb|1A5Z|A Chain A, Lactate Dehydrogenase From Thermotoga Maritima (tmldh)
Length = 319
Score = 84.3 bits (207), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 55/176 (31%), Positives = 90/176 (51%), Gaps = 16/176 (9%)
Query: 112 LTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVP 171
L G D+VI+ AGVP+KPG TR L NA ++K + ++K P +IV +++NPV+
Sbjct: 65 LKGSDVVIVAAGVPQKPGETRLQLLGRNARVMKEIARNVSKYAPDSIVIVVTNPVD---- 120
Query: 172 IAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVGGH-------- 222
+ F K DP+++ G T+LD R T +A+ G PR V V V+G H
Sbjct: 121 VLTYFFLKESGMDPRKVFGSGTVLDTARLRTLIAQHCGFSPRSVHVYVIGEHGDSEVPVW 180
Query: 223 AGVTI--LPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYA 276
+G I +PL + + ++ ++ + E++E K GA +++A A
Sbjct: 181 SGAMIGGIPLQNMCQVCQKCDSKILENFAEKTKRAAYEIIERK-GATHYAIALAVA 235
>pdb|1T2E|A Chain A, Plasmodium Falciparum Lactate Dehydrogenase S245a, A327p
Mutant Complexed With Nadh And Oxamate
Length = 322
Score = 82.0 bits (201), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 83/319 (26%), Positives = 146/319 (45%), Gaps = 30/319 (9%)
Query: 44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVV-NTP-GVTADISHMDTNAVVRG 101
+P K+ ++G+ G IG +A L+ L V+ L+D+V N P G D SH + A
Sbjct: 2 APKAKIVLVGS-GMIGGVMATLIVQKNLGDVV-LFDIVKNMPHGKALDTSHTNVMAYSNC 59
Query: 102 FLGQQQLEDALTGMDIVIIPAGVPRKPG-----MTRDDLFNINAGIVKTLCEGIAKCCPK 156
+ D L G D+VI+ AG + PG RDDL +N I+ + I K CP
Sbjct: 60 KVSGSNTYDDLAGADVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNCPN 119
Query: 157 AIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVD 215
A + +++NPV+ + ++ + +++G+ +LD R ++++ L + PR+V+
Sbjct: 120 AFIIVVTNPVD----VMVQLLHQHSGVPKNKIIGLGGVLDTSRLKYYISQKLNVCPRDVN 175
Query: 216 VPVVGGHAGVTIL----------PLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTG 265
+VG H +L PL + ++ E++ + DR N E+V
Sbjct: 176 AHIVGAHGNKMVLLKRYITVGGIPLQEFINNKL-ISDAELEAIFDRTVNTALEIVNLHAA 234
Query: 266 AGSATLSMAYAAAKFADACLRGLRGDAGVIECAYVASTVTELPFFASKVRLGRAGIEEIY 325
A + A+ L+ + + ++E Y S + F + V LG G+E++
Sbjct: 235 PYVAPAAAIIEMAESYLKDLKKVLICSTLLEGQYGHSDI----FGGTPVVLGANGVEQVI 290
Query: 326 SLGPLNEYERAGLEKAKKE 344
L LN E+A ++A E
Sbjct: 291 EL-QLNSEEKAKFDEAIAE 308
>pdb|1CET|A Chain A, Chloroquine Binds In The Cofactor Binding Site Of
Plasmodium Falciparum Lactate Dehydrogenase.
pdb|1LDG|A Chain A, Plasmodium Falciparum L-lactate Dehydrogenase Complexed
With Nadh And Oxamate
Length = 316
Score = 82.0 bits (201), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 86/322 (26%), Positives = 151/322 (46%), Gaps = 36/322 (11%)
Query: 44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVV-NTP-GVTADISHMDTNAVVRG 101
+P K+ ++G+ G IG +A L+ L V+ L+D+V N P G D SH + A
Sbjct: 2 APKAKIVLVGS-GMIGGVMATLIVQKNLGDVV-LFDIVKNMPHGKALDTSHTNVMAYSNC 59
Query: 102 FLGQQQLEDALTGMDIVIIPAGVPRKPG-----MTRDDLFNINAGIVKTLCEGIAKCCPK 156
+ D L G D+VI+ AG + PG R DL +N I+ + I K CP
Sbjct: 60 KVSGSNTYDDLAGSDVVIVTAGFTKAPGKSDKEWNRLDLLPLNNKIMIEIGGHIKKNCPN 119
Query: 157 AIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVD 215
A + +++NPV+ V ++ + +++G+ +LD R ++++ L + PR+V+
Sbjct: 120 AFIIVVTNPVDVMV----QLLHQHSGVPKNKIIGLGGVLDTSRLKYYISQKLNVCPRDVN 175
Query: 216 VPVVGGHAGVTIL----------PLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTG 265
+VG H +L PL + ++ E++ + DR N E+V
Sbjct: 176 AHIVGAHGNKMVLLKRYITVGGIPLQEFINNKL-ISDAELEAIFDRTVNTALEIVNLH-- 232
Query: 266 AGSATLSMAYAAAKFADACLRGLRGD---AGVIECAYVASTVTELPFFASKVRLGRAGIE 322
S ++ A A + A++ L+ L+ + ++E Y S + F + V LG G+E
Sbjct: 233 -ASPYVAPAAAIIEMAESYLKDLKKVLICSTLLEGQYGHSDI----FGGTPVVLGANGVE 287
Query: 323 EIYSLGPLNEYERAGLEKAKKE 344
++ L LN E+A ++A E
Sbjct: 288 QVIEL-QLNSEEKAKFDEAIAE 308
>pdb|2A92|A Chain A, Crystal Structure Of Lactate Dehydrogenase From Plasmodium
Vivax: Complex With Nadh
pdb|2A92|B Chain B, Crystal Structure Of Lactate Dehydrogenase From Plasmodium
Vivax: Complex With Nadh
pdb|2A92|C Chain C, Crystal Structure Of Lactate Dehydrogenase From Plasmodium
Vivax: Complex With Nadh
pdb|2A92|D Chain D, Crystal Structure Of Lactate Dehydrogenase From Plasmodium
Vivax: Complex With Nadh
pdb|2AA3|A Chain A, Crystal Structure Of Plasmodium Vivax Lactate
Dehydrogenase Complex With Apadh
pdb|2AA3|B Chain B, Crystal Structure Of Plasmodium Vivax Lactate
Dehydrogenase Complex With Apadh
pdb|2AA3|C Chain C, Crystal Structure Of Plasmodium Vivax Lactate
Dehydrogenase Complex With Apadh
pdb|2AA3|D Chain D, Crystal Structure Of Plasmodium Vivax Lactate
Dehydrogenase Complex With Apadh
Length = 321
Score = 79.7 bits (195), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 87/323 (26%), Positives = 155/323 (47%), Gaps = 38/323 (11%)
Query: 44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVV-NTP-GVTADISHMDTNAVVRG 101
+P K+ ++G+ G IG +A L+ L V+ ++DVV N P G D SH + A
Sbjct: 1 TPKPKIVLVGS-GMIGGVMATLIVQKNLGDVV-MFDVVKNMPQGKALDTSHSNVMAYSNC 58
Query: 102 FLGQQQLEDALTGMDIVIIPAGVPRKPG-----MTRDDLFNINAGIVKTLCEGIAKCCPK 156
+ D L G D+VI+ AG + PG RDDL +N I+ + I CP
Sbjct: 59 KVTGSNSYDDLKGADVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKNLCPN 118
Query: 157 AIVNLISNPVNSTVPIAAEVFKKVGTYDPK-RLLGV-TMLDVVRANTFVAEVLGLDPREV 214
A + +++NPV+ V + +F+ G PK +++G+ +LD R ++++ L + PR+V
Sbjct: 119 AFIIVVTNPVDVMVQL---LFEHSGV--PKNKIIGLGGVLDTSRLKYYISQKLNVCPRDV 173
Query: 215 DVPVVGGHAGVTIL----------PLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKT 264
+ +VG H +L PL + + +T E++ + DR N E+V
Sbjct: 174 NALIVGAHGNKMVLLKRYITVGGIPLQEFIN-NKKITDEEVEGIFDRTVNTALEIVNL-- 230
Query: 265 GAGSATLSMAYAAAKFADACLRGLRGD---AGVIECAYVASTVTELPFFASKVRLGRAGI 321
S ++ A A + A++ L+ ++ + ++E Y S + F + + +G G+
Sbjct: 231 -LASPYVAPAAAIIEMAESYLKDIKKVLVCSTLLEGQYGHSNI----FGGTPLVIGGTGV 285
Query: 322 EEIYSLGPLNEYERAGLEKAKKE 344
E++ L LN E+ ++A E
Sbjct: 286 EQVIEL-QLNAEEKTKFDEAVAE 307
>pdb|1OC4|A Chain A, Lactate Dehydrogenase From Plasmodium Berghei
pdb|1OC4|B Chain B, Lactate Dehydrogenase From Plasmodium Berghei
Length = 322
Score = 79.3 bits (194), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 82/322 (25%), Positives = 149/322 (46%), Gaps = 36/322 (11%)
Query: 44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVV-NTP-GVTADISHMDTNAVVRG 101
+P K+ ++G+ G IG +A L+ L V+ ++D+V N P G D SH + A
Sbjct: 2 APKAKIVLVGS-GMIGGVMATLIVQKNLGDVV-MFDIVKNMPHGKALDTSHTNVMAYSNC 59
Query: 102 FLGQQQLEDALTGMDIVIIPAGVPRKPG-----MTRDDLFNINAGIVKTLCEGIAKCCPK 156
+ D L D+VI+ AG + PG RDDL +N I+ + I CP
Sbjct: 60 KVSGSNTYDDLKDADVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKNNCPN 119
Query: 157 AIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVD 215
A + +++NPV+ + ++ + +++G+ +LD R ++++ L + PR+V+
Sbjct: 120 AFIIVVTNPVD----VMVQLLHQHSGVPKNKIVGLGGVLDTSRLKYYISQKLNVCPRDVN 175
Query: 216 VPVVGGHAGVTIL----------PLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTG 265
+VG H +L PL + + +T E+D + DR N E+V
Sbjct: 176 AHIVGAHGNKMVLLKRYITVGGIPLQEFIN-NKKITDQELDAIFDRTINTALEIVNLH-- 232
Query: 266 AGSATLSMAYAAAKFADACLRGLRGD---AGVIECAYVASTVTELPFFASKVRLGRAGIE 322
S ++ A A + A++ +R LR + ++E Y + F + + +G G+E
Sbjct: 233 -ASPYVAPAAAIIEMAESYIRDLRKVLICSTLLEGQYGHKDI----FAGTPLVIGGNGVE 287
Query: 323 EIYSLGPLNEYERAGLEKAKKE 344
++ L LN E+ ++A E
Sbjct: 288 QVIEL-QLNADEKKKFDEAVAE 308
>pdb|2FM3|A Chain A, Crystal Structure Of The Lactate Dehydrogenase From
Cryptosporidium Parvum Complexed With Substrate (Pyruvic
Acid) And Cofactor (B- Nicotinamide Adenine
Dinucleotide)
pdb|2FM3|B Chain B, Crystal Structure Of The Lactate Dehydrogenase From
Cryptosporidium Parvum Complexed With Substrate (Pyruvic
Acid) And Cofactor (B- Nicotinamide Adenine
Dinucleotide)
pdb|2FN7|A Chain A, Crystal Structure Of The Lactate Dehydrogenase From
Cryptosporidium Parvum Complexed With Substrate (Lactic
Acid) And Cofactor (B- Nicotinamide Adenine
Dinucleotide)
pdb|2FN7|B Chain B, Crystal Structure Of The Lactate Dehydrogenase From
Cryptosporidium Parvum Complexed With Substrate (Lactic
Acid) And Cofactor (B- Nicotinamide Adenine
Dinucleotide)
pdb|2FNZ|A Chain A, Crystal Structure Of The Lactate Dehydrogenase From
Cryptosporidium Parvum Complexed With Cofactor
(B-Nicotinamide Adenine Dinucleotide) And Inhibitor
(Oxamic Acid)
pdb|2FNZ|B Chain B, Crystal Structure Of The Lactate Dehydrogenase From
Cryptosporidium Parvum Complexed With Cofactor
(B-Nicotinamide Adenine Dinucleotide) And Inhibitor
(Oxamic Acid)
pdb|2FRM|A Chain A, Crystal Structure Of The Lactate Dehydrogenase From
Cryptosporidium Parvum
pdb|2FRM|B Chain B, Crystal Structure Of The Lactate Dehydrogenase From
Cryptosporidium Parvum
pdb|2FRM|C Chain C, Crystal Structure Of The Lactate Dehydrogenase From
Cryptosporidium Parvum
pdb|2FRM|D Chain D, Crystal Structure Of The Lactate Dehydrogenase From
Cryptosporidium Parvum
Length = 321
Score = 79.0 bits (193), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 62/191 (32%), Positives = 101/191 (52%), Gaps = 12/191 (6%)
Query: 48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISH-MDTNAVVRGFLG 104
K+AV+G+ G IG +A ++ + L V+ L+D+ G DI+H M +G
Sbjct: 6 KIAVIGS-GQIGGNIAYIVGKDNLADVV-LFDIAEGIPQGKALDITHSMVMFGSTSKVIG 63
Query: 105 QQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISN 164
D ++G D+VII A +P +P R +L NA I+ ++ EG+ K CP A V I+N
Sbjct: 64 TNDYAD-ISGSDVVIITASIPGRPKDDRSELLFGNARILDSVAEGVKKYCPNAFVICITN 122
Query: 165 PVNSTVPIAAEVFKKVGTYDPKRLLGVT-MLDVVRANTFVAEVLGLDPREVDVPVVGGHA 223
P++ + F+KV ++ G+ +LD R TF+A+ G++ +V V+GGH
Sbjct: 123 PLD----VMVSHFQKVSGLPHNKVCGMAGVLDSSRFRTFIAQHFGVNASDVSANVIGGH- 177
Query: 224 GVTILPLLSQV 234
G ++P S V
Sbjct: 178 GDGMVPATSSV 188
>pdb|2EWD|A Chain A, Crystal Structure Of The Lactate Dehydrogenase From
Cryptosporidium Parvum Complexed With Substrate (Pyruvic
Acid) And Cofactor Analog (3-Acetylpyridine Adenine
Dinucleotide).
pdb|2EWD|B Chain B, Crystal Structure Of The Lactate Dehydrogenase From
Cryptosporidium Parvum Complexed With Substrate (Pyruvic
Acid) And Cofactor Analog (3-Acetylpyridine Adenine
Dinucleotide)
Length = 317
Score = 78.6 bits (192), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 62/191 (32%), Positives = 101/191 (52%), Gaps = 12/191 (6%)
Query: 48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISH-MDTNAVVRGFLG 104
K+AV+G+ G IG +A ++ + L V+ L+D+ G DI+H M +G
Sbjct: 6 KIAVIGS-GQIGGNIAYIVGKDNLADVV-LFDIAEGIPQGKALDITHSMVMFGSTSKVIG 63
Query: 105 QQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISN 164
D ++G D+VII A +P +P R +L NA I+ ++ EG+ K CP A V I+N
Sbjct: 64 TDDYAD-ISGSDVVIITASIPGRPKDDRSELLFGNARILDSVAEGVKKYCPNAFVICITN 122
Query: 165 PVNSTVPIAAEVFKKVGTYDPKRLLGVT-MLDVVRANTFVAEVLGLDPREVDVPVVGGHA 223
P++ + F+KV ++ G+ +LD R TF+A+ G++ +V V+GGH
Sbjct: 123 PLD----VMVSHFQKVSGLPHNKVCGMAGVLDSSRFRTFIAQHFGVNASDVSANVIGGH- 177
Query: 224 GVTILPLLSQV 234
G ++P S V
Sbjct: 178 GDGMVPATSSV 188
>pdb|1HYG|A Chain A, Crystal Structure Of Mj0490 Gene Product, The Family Of
LactateMALATE DEHYDROGENASE
pdb|1HYG|B Chain B, Crystal Structure Of Mj0490 Gene Product, The Family Of
LactateMALATE DEHYDROGENASE
pdb|1HYE|A Chain A, Crystal Structure Of The Mj0490 Gene Product, The Family
Of LactateMALATE DEHYDROGENASE, DIMERIC STRUCTURE
Length = 313
Score = 77.8 bits (190), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 67/238 (28%), Positives = 116/238 (48%), Gaps = 28/238 (11%)
Query: 47 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHL----YDVVNTPGVTADI------SHMDTN 96
KV ++GA+G +G A+L+ P + L L + + G+ DI + D N
Sbjct: 1 MKVTIIGASGRVGSATALLLAKEPFMKDLVLIGREHSINKLEGLREDIYDALAGTRSDAN 60
Query: 97 AVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPK 156
V + ++++ D+VII +GVPRK GM+R DL NA IV + IA+ C
Sbjct: 61 IYVESDENLRIIDES----DVVIITSGVPRKEGMSRMDLAKTNAKIVGKYAKKIAEICDT 116
Query: 157 AIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVD 215
I +I+NPV+ + A V K ++ ++ G+ T LD +R +A+ G+ EV
Sbjct: 117 KIF-VITNPVD-VMTYKALVDSK---FERNQVFGLGTHLDSLRFKVAIAKFFGVHIDEVR 171
Query: 216 VPVVGGHAGVTILPLLSQ-------VKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGA 266
++G H G +++PLLS ++ ID + + ++ G +++ K G+
Sbjct: 172 TRIIGEH-GDSMVPLLSATSIGGIPIQKFERFKELPIDEIIEDVKTKGEQIIRLKGGS 228
>pdb|2D4A|A Chain A, Structure Of The Malate Dehydrogenase From Aeropyrum
Pernix
pdb|2D4A|B Chain B, Structure Of The Malate Dehydrogenase From Aeropyrum
Pernix
pdb|2D4A|C Chain C, Structure Of The Malate Dehydrogenase From Aeropyrum
Pernix
pdb|2D4A|D Chain D, Structure Of The Malate Dehydrogenase From Aeropyrum
Pernix
Length = 308
Score = 77.4 bits (189), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 84/310 (27%), Positives = 143/310 (46%), Gaps = 37/310 (11%)
Query: 49 VAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP-GVTADISHM--DTNAVVRGFLGQ 105
+ +LGA G +G A+++ + +L + P G D++H + +R G
Sbjct: 2 ITILGA-GKVGMATAVMLMMRGYDDLLLIARTPGKPQGEALDLAHAAAELGVDIR-ISGS 59
Query: 106 QQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNP 165
ED + G DIV++ AG+ RKPGMTR+ L NA + L E I AIV + +NP
Sbjct: 60 NSYED-MRGSDIVLVTAGIGRKPGMTREQLLEANANTMADLAEKIKAYAKDAIVVITTNP 118
Query: 166 VNSTVPIAAEVFKKVGTYDPKRLLGVT-MLDVVRANTFVAEVLGLDPREVDVPVVGGHAG 224
V++ + ++KK G + +R++G + +LD R ++++ LG+ + V+ V+G H
Sbjct: 119 VDAMTYV---MYKKTG-FPRERVIGFSGILDSARMAYYISQKLGVSFKSVNAIVLGMHGQ 174
Query: 225 VTI-LPLLSQ---VKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKF 280
+P LS V ++ EI+ + N G ++ E + S Y A
Sbjct: 175 KMFPVPRLSSVGGVPLEHLMSKEEIEEVVSETVNAGAKITELR------GYSSNYGPAAG 228
Query: 281 ADACLRGLRGDAGVI---------ECAYVASTVTELPFFASKVRLGRAGIEEIYSLGPLN 331
+ ++ D+ I E Y V E+P +G++GIE I L PL
Sbjct: 229 LVLTVEAIKRDSKRIYPYSLYLQGEYGY-NDIVAEVPAV-----IGKSGIERIIEL-PLT 281
Query: 332 EYERAGLEKA 341
E E+ ++A
Sbjct: 282 EDEKRKFDEA 291
>pdb|3NEP|X Chain X, 1.55a Resolution Structure Of Malate Dehydrogenase From
Salinibacter Ruber
Length = 314
Score = 75.1 bits (183), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 72/252 (28%), Positives = 119/252 (47%), Gaps = 25/252 (9%)
Query: 116 DIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAE 175
D+ II AG+PR PGM+RDDL N IV + E + P + + +++NP++ +A E
Sbjct: 71 DVCIITAGLPRSPGMSRDDLLAKNTEIVGGVTEQFVEGSPDSTIIVVANPLDVMTYVAYE 130
Query: 176 VFKKVGTYDPKRLLGVT-MLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQV 234
+ R++G+ +LD R +F+AE L + R+V ++GGH G T++PL
Sbjct: 131 ----ASGFPTNRVMGMAGVLDTGRFRSFIAEELDVSVRDVQALLMGGH-GDTMVPLPRYT 185
Query: 235 KPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFADACLRG------L 288
P ID RI+ E+VE GAG + + +A +A L
Sbjct: 186 TVGGIPVPQLIDDA--RIE----EIVERTKGAGGEIVDLMGTSAWYAPGAAAAEMTEAIL 239
Query: 289 RGDAGVIECAYVASTVTELP--FFASKVRLGRAGIEEIYSLGPLNEYERAGLEKAKKELA 346
+ + ++ CA L F V+LG G+EE+ + L+ E+A L K A
Sbjct: 240 KDNKRILPCAAYCDGEYGLDDLFIGVPVKLGAGGVEEVIEV-DLDADEKAQL----KTSA 294
Query: 347 GSIQKGVSFVRK 358
G + + +++
Sbjct: 295 GHVHSNLDDLQR 306
>pdb|3FI9|A Chain A, Crystal Structure Of Malate Dehydrogenase From
Porphyromonas Gingivalis
pdb|3FI9|B Chain B, Crystal Structure Of Malate Dehydrogenase From
Porphyromonas Gingivalis
Length = 343
Score = 73.2 bits (178), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 89/317 (28%), Positives = 134/317 (42%), Gaps = 33/317 (10%)
Query: 48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYD--VVNTPGVTADISHMDTNAVVRGFLGQ 105
K+ ++GAAG IG +A + L L LYD V GV +I H + F
Sbjct: 10 KLTIVGAAGMIGSNMAQTAAMMRLTPNLCLYDPFAVGLEGVAEEIRHCGFEGLNLTF--T 67
Query: 106 QQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAI-VNLISN 164
+++ALT ++ G PRK GMTR+DL NA I L + I CP V +I N
Sbjct: 68 SDIKEALTDAKYIVSSGGAPRKEGMTREDLLKGNAEIAAQLGKDIKSYCPDCKHVIIIFN 127
Query: 165 PVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREV-DVPVVGGH- 222
P + I V P ++ + LD R + +A+ G+ V + GGH
Sbjct: 128 PAD----ITGLVTLIYSGLKPSQVTTLAGLDSTRLQSELAKHFGIKQSLVTNTRTYGGHG 183
Query: 223 ---------AGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSM 273
A V PL + LT + L R+ GG +++ + S+ S
Sbjct: 184 EQMAVFASTAKVNGTPLTDLIGTD-KLTNEQWAELKQRVVKGGANIIKLR--GRSSFQSP 240
Query: 274 AYAAAKFADACLRG--LRGDAGVIECAYVASTVTELPFFASKVRLGRAGIE--EIYSLGP 329
+Y + + A + G R AG YV E A + + + G++ +I LG
Sbjct: 241 SYVSIEMIRAAMGGEAFRWPAG----CYVNVPGFEHIMMAMETTITKDGVKHSDINQLG- 295
Query: 330 LNEYERAGLEKAKKELA 346
NE ERA L+++ LA
Sbjct: 296 -NEAERAALKESYSHLA 311
>pdb|1Y6J|A Chain A, L-Lactate Dehydrogenase From Clostridium Thermocellum
Cth-1135
Length = 318
Score = 73.2 bits (178), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 85/326 (26%), Positives = 141/326 (43%), Gaps = 50/326 (15%)
Query: 48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--GVTADISHMDTNAVVRG--FL 103
KVA++GA G +G A M + + L L DV G DI+H G F+
Sbjct: 9 KVAIIGA-GFVGASAAFTMALRQTANELVLIDVFKEKAIGEAMDINH--------GLPFM 59
Query: 104 GQQQLE----DALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIV 159
GQ L + D++++ AG RKPG TR DL N I K + + I K ++
Sbjct: 60 GQMSLYAGDYSDVKDCDVIVVTAGANRKPGETRLDLAKKNVMIAKEVTQNIMKYYNHGVI 119
Query: 160 NLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPV 218
++SNPV+ I + +K +++G T+LD +R ++E LG+D + V +
Sbjct: 120 LVVSNPVD----IITYMIQKWSGLPVGKVIGSGTVLDSIRFRYLLSEKLGVDVKNVHGYI 175
Query: 219 VGGHAGVTILPLLSQVK------------PSCSLTPTEIDYLTDRIQNGGTEVVEAKTGA 266
+G H G + LPL S P C+ T + + + ++ G +++ K
Sbjct: 176 IGEH-GDSQLPLWSCTHIAGKNINEYIDDPKCNFTEEDKKKIAEDVKTAGATIIKNK--- 231
Query: 267 GSATLSMAYAAAKFADACLRG---LRGDAGVIECAY-VASTVTELPFFASKVRLGRAGIE 322
G+ +A + + L+ +R VI Y + LP + G++
Sbjct: 232 GATYYGIAVSINTIVETLLKNQNTIRTVGTVINGMYGIEDVAISLPSI-----VNSEGVQ 286
Query: 323 EI--YSLGPLNEYE-RAGLEKAKKEL 345
E+ ++L P E R E+ KK L
Sbjct: 287 EVLQFNLTPEEEEALRFSAEQVKKVL 312
>pdb|1HLP|A Chain A, Structural Features Stabilizing Halophilic Malate
Dehydrogenase From An Archaebacterium
pdb|1HLP|B Chain B, Structural Features Stabilizing Halophilic Malate
Dehydrogenase From An Archaebacterium
pdb|1D3A|A Chain A, Crystal Structure Of The Wild Type Halophilic Malate
Dehydrogenase In The Apo Form
pdb|1D3A|B Chain B, Crystal Structure Of The Wild Type Halophilic Malate
Dehydrogenase In The Apo Form
Length = 303
Score = 69.7 bits (169), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 78/280 (27%), Positives = 124/280 (44%), Gaps = 28/280 (10%)
Query: 82 NTPGVTADISH---MDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNI 138
+T G AD +H D+N VR Q ED G D+V+I AG+PR+PG TR DL
Sbjct: 40 DTVGQAADTNHGIAYDSNTRVR----QGGYEDT-AGSDVVVITAGIPRQPGQTRIDLAGD 94
Query: 139 NAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVV 197
NA I++ + + + I SNPV+ + + G ++++G LD
Sbjct: 95 NAPIMEDIQSSLDEHNDDYISLTTSNPVD----LLNRHLYEAGDRSREQVIGFGGRLDSA 150
Query: 198 RANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCS---LTPTEIDYLTDRIQN 254
R ++E + V+ ++G H G +P+ S+V+ + + E + L +Q
Sbjct: 151 RFRYVLSEEFDAPVQNVEGTILGEH-GDAQVPVFSKVRVDGTDPEFSGDEKEQLLGDLQE 209
Query: 255 GGTEVVEAKTGAGSATLSMAYAAAKFADACLRGLRGDAGVIECAYV---ASTVTELPFFA 311
+V+E K G+ A A +A L D G + A V E F
Sbjct: 210 SAMDVIERK---GATEWGPARGVAHMVEAILH----DTGEVLPASVKLEGEFGHEDTAFG 262
Query: 312 SKVRLGRAGIEEIYSLGPLNEYERAGLEKAKKELAGSIQK 351
VRLG G+EEI L++YE+ + A ++L+ K
Sbjct: 263 VPVRLGSNGVEEIVEW-DLDDYEQDLMADAAEKLSDQYDK 301
>pdb|2HLP|A Chain A, Crystal Structure Of The E267r Mutant Of A Halophilic
Malate Dehydrogenase In The Apo Form
pdb|2HLP|B Chain B, Crystal Structure Of The E267r Mutant Of A Halophilic
Malate Dehydrogenase In The Apo Form
Length = 303
Score = 69.7 bits (169), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 78/280 (27%), Positives = 124/280 (44%), Gaps = 28/280 (10%)
Query: 82 NTPGVTADISH---MDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNI 138
+T G AD +H D+N VR Q ED G D+V+I AG+PR+PG TR DL
Sbjct: 40 DTVGQAADTNHGIAYDSNTRVR----QGGYEDT-AGSDVVVITAGIPRQPGQTRIDLAGD 94
Query: 139 NAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVV 197
NA I++ + + + I SNPV+ + + G ++++G LD
Sbjct: 95 NAPIMEDIQSSLDEHNDDYISLTTSNPVD----LLNRHLYEAGDRSREQVIGFGGRLDSA 150
Query: 198 RANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCS---LTPTEIDYLTDRIQN 254
R ++E + V+ ++G H G +P+ S+V+ + + E + L +Q
Sbjct: 151 RFRYVLSEEFDAPVQNVEGTILGEH-GDAQVPVFSKVRVDGTDPEFSGDEKEQLLGDLQE 209
Query: 255 GGTEVVEAKTGAGSATLSMAYAAAKFADACLRGLRGDAGVIECAYV---ASTVTELPFFA 311
+V+E K G+ A A +A L D G + A V E F
Sbjct: 210 SAMDVIERK---GATEWGPARGVAHMVEAILH----DTGRVLPASVKLEGEFGHEDTAFG 262
Query: 312 SKVRLGRAGIEEIYSLGPLNEYERAGLEKAKKELAGSIQK 351
VRLG G+EEI L++YE+ + A ++L+ K
Sbjct: 263 VPVRLGSNGVEEIVEW-DLDDYEQDLMADAAEKLSDQYDK 301
>pdb|2J5K|A Chain A, 2.0 A Resolution Structure Of The Wild Type Malate
Dehydrogenase From Haloarcula Marismortui (radiation
Damage Series)
pdb|2J5K|B Chain B, 2.0 A Resolution Structure Of The Wild Type Malate
Dehydrogenase From Haloarcula Marismortui (radiation
Damage Series)
pdb|2J5K|C Chain C, 2.0 A Resolution Structure Of The Wild Type Malate
Dehydrogenase From Haloarcula Marismortui (radiation
Damage Series)
pdb|2J5K|D Chain D, 2.0 A Resolution Structure Of The Wild Type Malate
Dehydrogenase From Haloarcula Marismortui (radiation
Damage Series)
pdb|2J5Q|A Chain A, 2.15 A Resolution Structure Of The Wild Type Malate
Dehydrogenase From Haloarcula Marismortui After First
Radiation Burn (Radiation Damage Series)
pdb|2J5Q|B Chain B, 2.15 A Resolution Structure Of The Wild Type Malate
Dehydrogenase From Haloarcula Marismortui After First
Radiation Burn (Radiation Damage Series)
pdb|2J5Q|C Chain C, 2.15 A Resolution Structure Of The Wild Type Malate
Dehydrogenase From Haloarcula Marismortui After First
Radiation Burn (Radiation Damage Series)
pdb|2J5Q|D Chain D, 2.15 A Resolution Structure Of The Wild Type Malate
Dehydrogenase From Haloarcula Marismortui After First
Radiation Burn (Radiation Damage Series)
pdb|2J5R|A Chain A, 2.25 A Resolution Structure Of The Wild Type Malate
Dehydrogenase From Haloarcula Marismortui After Second
Radiation Burn (Radiation Damage Series)
pdb|2J5R|B Chain B, 2.25 A Resolution Structure Of The Wild Type Malate
Dehydrogenase From Haloarcula Marismortui After Second
Radiation Burn (Radiation Damage Series)
pdb|2J5R|C Chain C, 2.25 A Resolution Structure Of The Wild Type Malate
Dehydrogenase From Haloarcula Marismortui After Second
Radiation Burn (Radiation Damage Series)
pdb|2J5R|D Chain D, 2.25 A Resolution Structure Of The Wild Type Malate
Dehydrogenase From Haloarcula Marismortui After Second
Radiation Burn (Radiation Damage Series)
Length = 304
Score = 69.7 bits (169), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 78/280 (27%), Positives = 124/280 (44%), Gaps = 28/280 (10%)
Query: 82 NTPGVTADISH---MDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNI 138
+T G AD +H D+N VR Q ED G D+V+I AG+PR+PG TR DL
Sbjct: 41 DTVGQAADTNHGIAYDSNTRVR----QGGYEDT-AGSDVVVITAGIPRQPGQTRIDLAGD 95
Query: 139 NAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVV 197
NA I++ + + + I SNPV+ + + G ++++G LD
Sbjct: 96 NAPIMEDIQSSLDEHNDDYISLTTSNPVD----LLNRHLYEAGDRSREQVIGFGGRLDSA 151
Query: 198 RANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCS---LTPTEIDYLTDRIQN 254
R ++E + V+ ++G H G +P+ S+V+ + + E + L +Q
Sbjct: 152 RFRYVLSEEFDAPVQNVEGTILGEH-GDAQVPVFSKVRVDGTDPEFSGDEKEQLLGDLQE 210
Query: 255 GGTEVVEAKTGAGSATLSMAYAAAKFADACLRGLRGDAGVIECAYV---ASTVTELPFFA 311
+V+E K G+ A A +A L D G + A V E F
Sbjct: 211 SAMDVIERK---GATEWGPARGVAHMVEAILH----DTGEVLPASVKLEGEFGHEDTAFG 263
Query: 312 SKVRLGRAGIEEIYSLGPLNEYERAGLEKAKKELAGSIQK 351
VRLG G+EEI L++YE+ + A ++L+ K
Sbjct: 264 VPVRLGSNGVEEIVEW-DLDDYEQDLMADAAEKLSDQYDK 302
>pdb|2ZQY|A Chain A, T-State Structure Of Allosteric L-Lactate Dehydrogenase
From Lactobacillus Casei
pdb|2ZQY|B Chain B, T-State Structure Of Allosteric L-Lactate Dehydrogenase
From Lactobacillus Casei
pdb|2ZQY|C Chain C, T-State Structure Of Allosteric L-Lactate Dehydrogenase
From Lactobacillus Casei
pdb|2ZQY|D Chain D, T-State Structure Of Allosteric L-Lactate Dehydrogenase
From Lactobacillus Casei
pdb|2ZQZ|A Chain A, R-State Structure Of Allosteric L-Lactate Dehydrogenase
From Lactobacillus Casei
pdb|2ZQZ|B Chain B, R-State Structure Of Allosteric L-Lactate Dehydrogenase
From Lactobacillus Casei
pdb|2ZQZ|C Chain C, R-State Structure Of Allosteric L-Lactate Dehydrogenase
From Lactobacillus Casei
pdb|2ZQZ|D Chain D, R-State Structure Of Allosteric L-Lactate Dehydrogenase
From Lactobacillus Casei
pdb|2ZQZ|E Chain E, R-State Structure Of Allosteric L-Lactate Dehydrogenase
From Lactobacillus Casei
pdb|2ZQZ|F Chain F, R-State Structure Of Allosteric L-Lactate Dehydrogenase
From Lactobacillus Casei
pdb|3VKV|A Chain A, Complex Structure Of Lactobacillus Casei Lactate
Dehydrogenase With Fructose-1,6-Bisphosphate
pdb|3VKV|B Chain B, Complex Structure Of Lactobacillus Casei Lactate
Dehydrogenase With Fructose-1,6-Bisphosphate
pdb|3VKV|C Chain C, Complex Structure Of Lactobacillus Casei Lactate
Dehydrogenase With Fructose-1,6-Bisphosphate
pdb|3VKV|D Chain D, Complex Structure Of Lactobacillus Casei Lactate
Dehydrogenase With Fructose-1,6-Bisphosphate
pdb|3VKV|E Chain E, Complex Structure Of Lactobacillus Casei Lactate
Dehydrogenase With Fructose-1,6-Bisphosphate
pdb|3VKV|F Chain F, Complex Structure Of Lactobacillus Casei Lactate
Dehydrogenase With Fructose-1,6-Bisphosphate
Length = 326
Score = 68.2 bits (165), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 62/252 (24%), Positives = 112/252 (44%), Gaps = 42/252 (16%)
Query: 116 DIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAE 175
D+V+I AG P+KPG TR DL N N I+K++ + I I + +NPV+ I
Sbjct: 78 DLVVITAGAPQKPGETRLDLVNKNLKILKSIVDPIVDSGFNGIFLVAANPVD----ILTY 133
Query: 176 VFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQ- 233
K+ + R++G T LD R +AE++ +D R V ++G H G T P+ S
Sbjct: 134 ATWKLSGFPKNRVVGSGTSLDTARFRQSIAEMVNVDARSVHAYIMGEH-GDTEFPVWSHA 192
Query: 234 ----------VKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFADA 283
VK + ++ + + +++ E+++ K G+ +A A A+ + A
Sbjct: 193 NIGGVTIAEWVKAHPEIKEDKLVKMFEDVRDAAYEIIKLK---GATFYGIATALARISKA 249
Query: 284 CLRG----------LRGDAGVIECAYVASTVTELPFFASKVRLGRAGIEEIYSLGPLNEY 333
L + G G+ + + + + R GI+ I + PL ++
Sbjct: 250 ILNDENAVLPLSVYMDGQYGLNDI-----------YIGTPAVINRNGIQNILEI-PLTDH 297
Query: 334 ERAGLEKAKKEL 345
E ++K+ +L
Sbjct: 298 EEESMQKSASQL 309
>pdb|3VKU|A Chain A, Penta Mutant Of Lactobacillus Casei Lactate Dehydrogenase
pdb|3VKU|B Chain B, Penta Mutant Of Lactobacillus Casei Lactate Dehydrogenase
pdb|3VKU|C Chain C, Penta Mutant Of Lactobacillus Casei Lactate Dehydrogenase
pdb|3VKU|D Chain D, Penta Mutant Of Lactobacillus Casei Lactate Dehydrogenase
pdb|3VKU|E Chain E, Penta Mutant Of Lactobacillus Casei Lactate Dehydrogenase
pdb|3VKU|F Chain F, Penta Mutant Of Lactobacillus Casei Lactate Dehydrogenase
Length = 326
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 62/252 (24%), Positives = 112/252 (44%), Gaps = 42/252 (16%)
Query: 116 DIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAE 175
D+V+I AG P+KPG TR DL N N I+K++ + I I + +NPV+ I
Sbjct: 78 DLVVITAGAPQKPGETRLDLVNKNLKILKSIVDPIVDSGFNGIFLVAANPVD----ILTY 133
Query: 176 VFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQ- 233
K+ + R++G T LD R +A+++ +D R V ++G H G T P+ S
Sbjct: 134 ATWKLSGFPKNRVVGSGTSLDTARFRQSIAKMVNVDARSVHAYIMGEH-GDTEFPVWSHA 192
Query: 234 ----------VKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFADA 283
VK + ++ + + ++N E+++ K G+ +A A A+ + A
Sbjct: 193 NIGGVTIAEWVKAHPEIKEDKLVKMFEDVRNKAYEIIKLK---GATFYGIATALARISKA 249
Query: 284 CLRG----------LRGDAGVIECAYVASTVTELPFFASKVRLGRAGIEEIYSLGPLNEY 333
L + G G+ + + + + R GI+ I + PL ++
Sbjct: 250 ILNDENAVLPLSVYMDGQYGLNDI-----------YIGTPAVINRNGIQNILEI-PLTDH 297
Query: 334 ERAGLEKAKKEL 345
E ++K+ +L
Sbjct: 298 EEESMQKSASQL 309
>pdb|1LLC|A Chain A, Structure Determination Of The Allosteric L-Lactate
Dehydrogenase From Lactobacillus Casei At 3.0 Angstroms
Resolution
Length = 325
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 61/252 (24%), Positives = 112/252 (44%), Gaps = 42/252 (16%)
Query: 116 DIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAE 175
D+V+I AG P++PG TR DL N N I+K++ + I I + +NPV+ I
Sbjct: 77 DLVVITAGAPKQPGETRLDLVNKNLKILKSIVDPIVDSGFNLIFLVAANPVD----ILTY 132
Query: 176 VFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQ- 233
K+ + R++G T LD R +AE++ +D R V ++G H G T P+ S
Sbjct: 133 ATWKLSGFPKNRVVGSGTSLDTARFRQSIAEMVNVDARSVHAYIMGEH-GDTEFPVWSHA 191
Query: 234 ----------VKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFADA 283
VK + ++ + + +++ E+++ K G+ +A A A+ + A
Sbjct: 192 NIGGVTIAEWVKAHPEIKEDKLVKMFEDVRDAAYEIIKLK---GATFYGIATALARISKA 248
Query: 284 CLRG----------LRGDAGVIECAYVASTVTELPFFASKVRLGRAGIEEIYSLGPLNEY 333
L + G G+ + + + + R GI+ I + PL ++
Sbjct: 249 ILNDENAVLPLSVYMDGQYGINDL-----------YIGTPAVINRNGIQNILEI-PLTDH 296
Query: 334 ERAGLEKAKKEL 345
E ++K+ +L
Sbjct: 297 EEESMQKSASQL 308
>pdb|1O6Z|A Chain A, 1.95 A Resolution Structure Of (r207s,r292s) Mutant Of
Malate Dehydrogenase From The Halophilic Archaeon
Haloarcula Marismortui (holo Form)
pdb|1O6Z|B Chain B, 1.95 A Resolution Structure Of (r207s,r292s) Mutant Of
Malate Dehydrogenase From The Halophilic Archaeon
Haloarcula Marismortui (holo Form)
pdb|1O6Z|C Chain C, 1.95 A Resolution Structure Of (r207s,r292s) Mutant Of
Malate Dehydrogenase From The Halophilic Archaeon
Haloarcula Marismortui (holo Form)
pdb|1O6Z|D Chain D, 1.95 A Resolution Structure Of (r207s,r292s) Mutant Of
Malate Dehydrogenase From The Halophilic Archaeon
Haloarcula Marismortui (holo Form)
Length = 303
Score = 65.9 bits (159), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 77/280 (27%), Positives = 122/280 (43%), Gaps = 28/280 (10%)
Query: 82 NTPGVTADISH---MDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNI 138
+T G AD +H D+N VR Q ED G D+V+I AG+PR+PG TR DL
Sbjct: 40 DTVGQAADTNHGIAYDSNTRVR----QGGYEDT-AGSDVVVITAGIPRQPGQTRIDLAGD 94
Query: 139 NAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVV 197
NA I++ + + + I SNPV+ + + G ++++G LD
Sbjct: 95 NAPIMEDIQSSLDEHNDDYISLTTSNPVD----LLNRHLYEAGDRSREQVIGFGGRLDSA 150
Query: 198 RANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCS---LTPTEIDYLTDRIQN 254
R ++E + V+ ++G H G +P+ S+V + + E + L +Q
Sbjct: 151 RFRYVLSEEFDAPVQNVEGTILGEH-GDAQVPVFSKVSVDGTDPEFSGDEKEQLLGDLQE 209
Query: 255 GGTEVVEAKTGAGSATLSMAYAAAKFADACLRGLRGDAGVIECAYV---ASTVTELPFFA 311
+V+E K G+ A A +A L D G + A V E F
Sbjct: 210 SAMDVIERK---GATEWGPARGVAHMVEAILH----DTGEVLPASVKLEGEFGHEDTAFG 262
Query: 312 SKVRLGRAGIEEIYSLGPLNEYERAGLEKAKKELAGSIQK 351
V LG G+EEI L++YE+ + A ++L+ K
Sbjct: 263 VPVSLGSNGVEEIVEW-DLDDYEQDLMADAAEKLSDQYDK 301
>pdb|2X0R|A Chain A, R207s,R292s Mutant Of Malate Dehydrogenase From The
Halophilic Archaeon Haloarcula Marismortui (Holo Form)
pdb|2X0R|B Chain B, R207s,R292s Mutant Of Malate Dehydrogenase From The
Halophilic Archaeon Haloarcula Marismortui (Holo Form)
Length = 304
Score = 65.9 bits (159), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 77/280 (27%), Positives = 122/280 (43%), Gaps = 28/280 (10%)
Query: 82 NTPGVTADISH---MDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNI 138
+T G AD +H D+N VR Q ED G D+V+I AG+PR+PG TR DL
Sbjct: 41 DTVGQAADTNHGIAYDSNTRVR----QGGYEDT-AGSDVVVITAGIPRQPGQTRIDLAGD 95
Query: 139 NAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVV 197
NA I++ + + + I SNPV+ + + G ++++G LD
Sbjct: 96 NAPIMEDIQSSLDEHNDDYISLTTSNPVD----LLNRHLYEAGDRSREQVIGFGGRLDSA 151
Query: 198 RANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCS---LTPTEIDYLTDRIQN 254
R ++E + V+ ++G H G +P+ S+V + + E + L +Q
Sbjct: 152 RFRYVLSEEFDAPVQNVEGTILGEH-GDAQVPVFSKVSVDGTDPEFSGDEKEQLLGDLQE 210
Query: 255 GGTEVVEAKTGAGSATLSMAYAAAKFADACLRGLRGDAGVIECAYV---ASTVTELPFFA 311
+V+E K G+ A A +A L D G + A V E F
Sbjct: 211 SAMDVIERK---GATEWGPARGVAHMVEAILH----DTGEVLPASVKLEGEFGHEDTAFG 263
Query: 312 SKVRLGRAGIEEIYSLGPLNEYERAGLEKAKKELAGSIQK 351
V LG G+EEI L++YE+ + A ++L+ K
Sbjct: 264 VPVSLGSNGVEEIVEW-DLDDYEQDLMADAAEKLSDQYDK 302
>pdb|1I10|A Chain A, Human Muscle L-Lactate Dehydrogenase M Chain, Ternary
Complex With Nadh And Oxamate
pdb|1I10|B Chain B, Human Muscle L-Lactate Dehydrogenase M Chain, Ternary
Complex With Nadh And Oxamate
pdb|1I10|C Chain C, Human Muscle L-Lactate Dehydrogenase M Chain, Ternary
Complex With Nadh And Oxamate
pdb|1I10|D Chain D, Human Muscle L-Lactate Dehydrogenase M Chain, Ternary
Complex With Nadh And Oxamate
pdb|1I10|E Chain E, Human Muscle L-Lactate Dehydrogenase M Chain, Ternary
Complex With Nadh And Oxamate
pdb|1I10|F Chain F, Human Muscle L-Lactate Dehydrogenase M Chain, Ternary
Complex With Nadh And Oxamate
pdb|1I10|G Chain G, Human Muscle L-Lactate Dehydrogenase M Chain, Ternary
Complex With Nadh And Oxamate
pdb|1I10|H Chain H, Human Muscle L-Lactate Dehydrogenase M Chain, Ternary
Complex With Nadh And Oxamate
Length = 331
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 83/328 (25%), Positives = 139/328 (42%), Gaps = 29/328 (8%)
Query: 44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--GVTADISH----MDTNA 97
+P K+ V+G G +G A+ + + L L L DV+ G D+ H + T
Sbjct: 17 TPQNKITVVGV-GAVGMACAISILMKDLADELALVDVIEDKLKGEMMDLQHGSLFLRTPK 75
Query: 98 VVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKA 157
+V G + + +VII AG ++ G +R +L N I K + + K P
Sbjct: 76 IVSG-----KDYNVTANSKLVIITAGARQQEGESRLNLVQRNVNIFKFIIPNVVKYSPNC 130
Query: 158 IVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDV 216
+ ++SNPV+ I V K+ + R++G LD R + E LG+ P
Sbjct: 131 KLLIVSNPVD----ILTYVAWKISGFPKNRVIGSGCNLDSARFRYLMGERLGVHPLSCHG 186
Query: 217 PVVGGHAGVTILPLLSQVKPS-CSLTPTEIDYLTDRIQNGGTEV--------VEAKTGAG 267
V+G H G + +P+ S + + SL D TD+ + EV E G
Sbjct: 187 WVLGEH-GDSSVPVWSGMNVAGVSLKTLHPDLGTDKDKEQWKEVHKQVVESAYEVIKLKG 245
Query: 268 SATLSMAYAAAKFADACLRGLRGDAGVIECAYVASTVTELPFFASKVRLGRAGIEEIYSL 327
+ ++ + A A++ ++ LR V + + F + LG+ GI ++ +
Sbjct: 246 YTSWAIGLSVADLAESIMKNLRRVHPVSTMIKGLYGIKDDVFLSVPCILGQNGISDLVKV 305
Query: 328 GPLNEYERAGLEKAKKELAGSIQKGVSF 355
L E A L+K+ L G IQK + F
Sbjct: 306 -TLTSEEEARLKKSADTLWG-IQKELQF 331
>pdb|4AJP|A Chain A, Human Ldha In Complex With 2-((4-(4-((3-((2-Methyl-1,3-
Benzothiazol-6yl)amino)-3-Oxo-Propyl)amino)-4-Oxo-Butyl)
Phenyl)methyl)propanedioic Acid
pdb|4AJP|B Chain B, Human Ldha In Complex With 2-((4-(4-((3-((2-Methyl-1,3-
Benzothiazol-6yl)amino)-3-Oxo-Propyl)amino)-4-Oxo-Butyl)
Phenyl)methyl)propanedioic Acid
pdb|4AJP|C Chain C, Human Ldha In Complex With 2-((4-(4-((3-((2-Methyl-1,3-
Benzothiazol-6yl)amino)-3-Oxo-Propyl)amino)-4-Oxo-Butyl)
Phenyl)methyl)propanedioic Acid
pdb|4AJP|D Chain D, Human Ldha In Complex With 2-((4-(4-((3-((2-Methyl-1,3-
Benzothiazol-6yl)amino)-3-Oxo-Propyl)amino)-4-Oxo-Butyl)
Phenyl)methyl)propanedioic Acid
Length = 337
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 83/328 (25%), Positives = 139/328 (42%), Gaps = 29/328 (8%)
Query: 44 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--GVTADISH----MDTNA 97
+P K+ V+G G +G A+ + + L L L DV+ G D+ H + T
Sbjct: 17 TPQNKITVVGV-GAVGMACAISILMKDLADELALVDVIEDKLKGEMMDLQHGSLFLRTPK 75
Query: 98 VVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKA 157
+V G + + +VII AG ++ G +R +L N I K + + K P
Sbjct: 76 IVSG-----KDYNVTANSKLVIITAGARQQEGESRLNLVQRNVNIFKFIIPNVVKYSPNC 130
Query: 158 IVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDV 216
+ ++SNPV+ I V K+ + R++G LD R + E LG+ P
Sbjct: 131 KLLIVSNPVD----ILTYVAWKISGFPKNRVIGSGCNLDSARFRYLMGERLGVHPLSCHG 186
Query: 217 PVVGGHAGVTILPLLSQVKPS-CSLTPTEIDYLTDRIQNGGTEV--------VEAKTGAG 267
V+G H G + +P+ S + + SL D TD+ + EV E G
Sbjct: 187 WVLGEH-GDSSVPVWSGMNVAGVSLKTLHPDLGTDKDKEQWKEVHKQVVESAYEVIKLKG 245
Query: 268 SATLSMAYAAAKFADACLRGLRGDAGVIECAYVASTVTELPFFASKVRLGRAGIEEIYSL 327
+ ++ + A A++ ++ LR V + + F + LG+ GI ++ +
Sbjct: 246 YTSWAIGLSVADLAESIMKNLRRVHPVSTMIKGLYGIKDDVFLSVPCILGQNGISDLVKV 305
Query: 328 GPLNEYERAGLEKAKKELAGSIQKGVSF 355
L E A L+K+ L G IQK + F
Sbjct: 306 -TLTSEEEARLKKSADTLWG-IQKELQF 331
>pdb|3D0O|A Chain A, Crystal Structure Of Lactate Dehydrogenase From
Staphylococcus Aureus
pdb|3D0O|B Chain B, Crystal Structure Of Lactate Dehydrogenase From
Staphylococcus Aureus
pdb|3D4P|A Chain A, Crystal Structure Of Lactate Dehydrogenase From
Staphylococcus Aureus Complexed With Nad And Pyruvate
pdb|3D4P|B Chain B, Crystal Structure Of Lactate Dehydrogenase From
Staphylococcus Aureus Complexed With Nad And Pyruvate
Length = 317
Score = 62.0 bits (149), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 81/323 (25%), Positives = 139/323 (43%), Gaps = 45/323 (13%)
Query: 46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMD-----TNAVVR 100
G KV ++G G +G A + +V L + D+ +T V D+ + + VR
Sbjct: 6 GNKVVLIGN-GAVGSSYAFSLVNQSIVDELVIIDL-DTEKVRGDVMDLKHATPYSPTTVR 63
Query: 101 GFLGQ-QQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIV 159
G+ DA D+V+I AG +KPG TR DL + N I K++ + I
Sbjct: 64 VKAGEYSDCHDA----DLVVICAGAAQKPGETRLDLVSKNLKIFKSIVGEVMASKFDGIF 119
Query: 160 NLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPV 218
+ +NPV+ I A K +R++G T+LD R ++E + PR VD +
Sbjct: 120 LVATNPVD----ILAYATWKFSGLPKERVIGSGTILDSARFRLLLSEAFDVAPRSVDAQI 175
Query: 219 VGGHAGVTILPLLSQV----KPSCSLTP------TEIDYLTDRIQNGGTEVVEAKTGAGS 268
+G H G T LP+ S +P +L +I+ + + ++ ++++AK G+
Sbjct: 176 IGEH-GDTELPVWSHANIAGQPLKTLLEQRPEGKAQIEQIFVQTRDAAYDIIQAK---GA 231
Query: 269 ATLSMAYAAAKFADACLRGLRGDAGVIECAYVASTVTELPFFASKVRLG------RAGIE 322
+A A+ +A R + S + E + V +G R GI
Sbjct: 232 TYYGVAMGLARITEAIFRNE-------DAVLTVSALLEGEYEEEDVYIGVPAVINRNGIR 284
Query: 323 EIYSLGPLNEYERAGLEKAKKEL 345
+ + PLN+ E++ + K L
Sbjct: 285 NVVEI-PLNDEEQSKFAHSAKTL 306
>pdb|3H3J|A Chain A, Crystal Structure Of Lactate Dehydrogenase Mutant (A85r)
Fro Staphylococcus Aureus Complexed With Nad And
Pyruvate
pdb|3H3J|B Chain B, Crystal Structure Of Lactate Dehydrogenase Mutant (A85r)
Fro Staphylococcus Aureus Complexed With Nad And
Pyruvate
Length = 317
Score = 61.6 bits (148), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 81/323 (25%), Positives = 139/323 (43%), Gaps = 45/323 (13%)
Query: 46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMD-----TNAVVR 100
G KV ++G G +G A + +V L + D+ +T V D+ + + VR
Sbjct: 6 GNKVVLIGN-GAVGSSYAFSLVNQSIVDELVIIDL-DTEKVRGDVMDLKHATPYSPTTVR 63
Query: 101 GFLGQ-QQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIV 159
G+ DA D+V+I AG +KPG TR DL + N I K++ + I
Sbjct: 64 VKAGEYSDCHDA----DLVVICAGARQKPGETRLDLVSKNLKIFKSIVGEVMASKFDGIF 119
Query: 160 NLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPV 218
+ +NPV+ I A K +R++G T+LD R ++E + PR VD +
Sbjct: 120 LVATNPVD----ILAYATWKFSGLPKERVIGSGTILDSARFRLLLSEAFDVAPRSVDAQI 175
Query: 219 VGGHAGVTILPLLSQV----KPSCSLTP------TEIDYLTDRIQNGGTEVVEAKTGAGS 268
+G H G T LP+ S +P +L +I+ + + ++ ++++AK G+
Sbjct: 176 IGEH-GDTELPVWSHANIAGQPLKTLLEQRPEGKAQIEQIFVQTRDAAYDIIQAK---GA 231
Query: 269 ATLSMAYAAAKFADACLRGLRGDAGVIECAYVASTVTELPFFASKVRLG------RAGIE 322
+A A+ +A R + S + E + V +G R GI
Sbjct: 232 TYYGVAMGLARITEAIFRNE-------DAVLTVSALLEGEYEEEDVYIGVPAVINRNGIR 284
Query: 323 EIYSLGPLNEYERAGLEKAKKEL 345
+ + PLN+ E++ + K L
Sbjct: 285 NVVEI-PLNDEEQSKFAHSAKTL 306
>pdb|4A73|A Chain A, Single Point Mutant Of Thermus Thermophilus Lactate
Dehydrogenase
pdb|4A73|B Chain B, Single Point Mutant Of Thermus Thermophilus Lactate
Dehydrogenase
pdb|4A73|C Chain C, Single Point Mutant Of Thermus Thermophilus Lactate
Dehydrogenase
pdb|4A73|D Chain D, Single Point Mutant Of Thermus Thermophilus Lactate
Dehydrogenase
Length = 310
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 48/181 (26%), Positives = 85/181 (46%), Gaps = 22/181 (12%)
Query: 112 LTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVP 171
L G V++ AGV ++PG TR L + NA + + + + P+A++ + +NPV+
Sbjct: 65 LEGARAVVLAAGVAQRPGETRLQLLDRNAQVFAQVVPRVLEAAPEAVLLVATNPVD---- 120
Query: 172 IAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTIL-- 228
+ +V ++ P R++G T+LD R +AE L + P+ V V+G H +L
Sbjct: 121 VMTQVAYRLSGLPPGRVVGSGTILDTARFRALLAEYLRVAPQSVHAYVLGEHGDSEVLVW 180
Query: 229 --------PLLSQVKPS-CSLTPTEIDYLTDRIQNGGTEVVEAK------TGAGSATLSM 273
PLL + +L+P + + + ++ ++E K GAG A L
Sbjct: 181 SSAQVGGVPLLEFAEARGAALSPEDRARIDEGVRRAAYRIIEGKGATYYGIGAGLARLVR 240
Query: 274 A 274
A
Sbjct: 241 A 241
>pdb|2E37|A Chain A, Structure Of Tt0471 Protein From Thermus Thermophilus
pdb|2E37|B Chain B, Structure Of Tt0471 Protein From Thermus Thermophilus
pdb|2E37|C Chain C, Structure Of Tt0471 Protein From Thermus Thermophilus
pdb|2E37|D Chain D, Structure Of Tt0471 Protein From Thermus Thermophilus
pdb|2E37|E Chain E, Structure Of Tt0471 Protein From Thermus Thermophilus
pdb|2E37|F Chain F, Structure Of Tt0471 Protein From Thermus Thermophilus
pdb|2E37|G Chain G, Structure Of Tt0471 Protein From Thermus Thermophilus
pdb|2E37|H Chain H, Structure Of Tt0471 Protein From Thermus Thermophilus
Length = 310
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 48/181 (26%), Positives = 85/181 (46%), Gaps = 22/181 (12%)
Query: 112 LTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVP 171
L G V++ AGV ++PG TR L + NA + + + + P+A++ + +NPV+
Sbjct: 65 LEGARAVVLAAGVAQRPGETRLQLLDRNAQVFAQVVPRVLEAAPEAVLLVATNPVD---- 120
Query: 172 IAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTIL-- 228
+ +V ++ P R++G T+LD R +AE L + P+ V V+G H +L
Sbjct: 121 VXTQVAYRLSGLPPGRVVGSGTILDTARFRALLAEYLRVAPQSVHAYVLGEHGDSEVLVW 180
Query: 229 --------PLLSQVKPSC-SLTPTEIDYLTDRIQNGGTEVVEAK------TGAGSATLSM 273
PLL + +L+P + + + ++ ++E K GAG A L
Sbjct: 181 SSAQVGGVPLLEFAEARGRALSPEDRARIDEGVRRAAYRIIEGKGATYYGIGAGLARLVR 240
Query: 274 A 274
A
Sbjct: 241 A 241
>pdb|4AJ4|A Chain A, Rat Ldha In Complex With
4-((2-Allylsulfanyl-1,3-Benzothizol-6-Yl)
Amino)-4-Oxo-Butanoic Acid
pdb|4AJ4|B Chain B, Rat Ldha In Complex With
4-((2-Allylsulfanyl-1,3-Benzothizol-6-Yl)
Amino)-4-Oxo-Butanoic Acid
pdb|4AJ4|C Chain C, Rat Ldha In Complex With
4-((2-Allylsulfanyl-1,3-Benzothizol-6-Yl)
Amino)-4-Oxo-Butanoic Acid
pdb|4AJ4|D Chain D, Rat Ldha In Complex With
4-((2-Allylsulfanyl-1,3-Benzothizol-6-Yl)
Amino)-4-Oxo-Butanoic Acid
Length = 332
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 83/330 (25%), Positives = 142/330 (43%), Gaps = 35/330 (10%)
Query: 45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--GVTADISH----MDTNAV 98
P K+ V+G G +G A+ + + L L L DV+ G D+ H + T +
Sbjct: 19 PQNKITVVGV-GAVGMACAISILMKDLADELALVDVIEDKLKGEMMDLQHGSLFLKTPKI 77
Query: 99 VRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAI 158
V + +VII AG ++ G +R +L N I K + + K P+
Sbjct: 78 VSS-----KDYSVTANSKLVIITAGARQQEGESRLNLVQRNVNIFKFIIPNVVKYSPQCK 132
Query: 159 VNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVP 217
+ ++SNPV+ I V K+ + R++G LD R + E LG+ P
Sbjct: 133 LLIVSNPVD----ILTYVAWKISGFPKNRVIGSGCNLDSARFRYLMGERLGVHPLSCHGW 188
Query: 218 VVGGHAGVTILPLLSQVKPS----CSLTP---TEIDY-----LTDRIQNGGTEVVEAKTG 265
V+G H G + +P+ S V + SL P T+ D + ++ + EV++ K
Sbjct: 189 VLGEH-GDSSVPVWSGVNVAGVSLKSLNPQLGTDADKEQWKDVHKQVVDSAYEVIKLK-- 245
Query: 266 AGSATLSMAYAAAKFADACLRGLRGDAGVIECAYVASTVTELPFFASKVRLGRAGIEEIY 325
G + ++ + A A++ ++ LR + + E F + LG+ GI ++
Sbjct: 246 -GYTSWAIGLSVADLAESIMKNLRRVHPISTMIKGLYGIKEDVFLSVPCILGQNGISDVV 304
Query: 326 SLGPLNEYERAGLEKAKKELAGSIQKGVSF 355
+ L E A L+K+ L G IQK + F
Sbjct: 305 KV-TLTPDEEARLKKSADTLWG-IQKELQF 332
>pdb|2V6M|A Chain A, Crystal Structure Of Lactate Dehydrogenase From Thermus
Thermophilus Hb8 (Apo Form)
pdb|2V6M|B Chain B, Crystal Structure Of Lactate Dehydrogenase From Thermus
Thermophilus Hb8 (Apo Form)
pdb|2V6M|C Chain C, Crystal Structure Of Lactate Dehydrogenase From Thermus
Thermophilus Hb8 (Apo Form)
pdb|2V6M|D Chain D, Crystal Structure Of Lactate Dehydrogenase From Thermus
Thermophilus Hb8 (Apo Form)
pdb|2V7P|A Chain A, Crystal Structure Of Lactate Dehydrogenase From Thermus
Thermophilus Hb8 (Holo Form)
pdb|2V7P|B Chain B, Crystal Structure Of Lactate Dehydrogenase From Thermus
Thermophilus Hb8 (Holo Form)
pdb|2V7P|C Chain C, Crystal Structure Of Lactate Dehydrogenase From Thermus
Thermophilus Hb8 (Holo Form)
pdb|2V7P|D Chain D, Crystal Structure Of Lactate Dehydrogenase From Thermus
Thermophilus Hb8 (Holo Form)
Length = 310
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 48/181 (26%), Positives = 85/181 (46%), Gaps = 22/181 (12%)
Query: 112 LTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVP 171
L G V++ AGV ++PG TR L + NA + + + + P+A++ + +NPV+
Sbjct: 65 LEGARAVVLAAGVAQRPGETRLQLLDRNAQVFAQVVPRVLEAAPEAVLLVATNPVD---- 120
Query: 172 IAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTIL-- 228
+ +V ++ P R++G T+LD R +AE L + P+ V V+G H +L
Sbjct: 121 VMTQVAYRLSGLPPGRVVGSGTILDTARFRALLAEYLRVAPQSVHAYVLGEHGDSEVLVW 180
Query: 229 --------PLLSQVKPSC-SLTPTEIDYLTDRIQNGGTEVVEAK------TGAGSATLSM 273
PLL + +L+P + + + ++ ++E K GAG A L
Sbjct: 181 SSAQVGGVPLLEFAEARGRALSPEDRARIDEGVRRAAYRIIEGKGATYYGIGAGLARLVR 240
Query: 274 A 274
A
Sbjct: 241 A 241
>pdb|4AJ1|A Chain A, Rat Ldha In Complex With N-(2-(Methylamino)-1,3-
Benzothiazol-6-Yl)acetamide
pdb|4AJ1|B Chain B, Rat Ldha In Complex With N-(2-(Methylamino)-1,3-
Benzothiazol-6-Yl)acetamide
pdb|4AJ1|C Chain C, Rat Ldha In Complex With N-(2-(Methylamino)-1,3-
Benzothiazol-6-Yl)acetamide
pdb|4AJ1|D Chain D, Rat Ldha In Complex With N-(2-(Methylamino)-1,3-
Benzothiazol-6-Yl)acetamide
pdb|4AJ2|A Chain A, Rat Ldha In Complex With 5-(2-Chlorophenyl)-1h-Tetrazole
pdb|4AJ2|B Chain B, Rat Ldha In Complex With 5-(2-Chlorophenyl)-1h-Tetrazole
pdb|4AJ2|C Chain C, Rat Ldha In Complex With 5-(2-Chlorophenyl)-1h-Tetrazole
pdb|4AJ2|D Chain D, Rat Ldha In Complex With 5-(2-Chlorophenyl)-1h-Tetrazole
pdb|4AJE|A Chain A, Rat Ldha In Complex With 2-(4-Bromophenoxy)propanedioic
Acid
pdb|4AJE|B Chain B, Rat Ldha In Complex With 2-(4-Bromophenoxy)propanedioic
Acid
pdb|4AJE|C Chain C, Rat Ldha In Complex With 2-(4-Bromophenoxy)propanedioic
Acid
pdb|4AJE|D Chain D, Rat Ldha In Complex With 2-(4-Bromophenoxy)propanedioic
Acid
pdb|4AJH|A Chain A, Rat Ldha In Complex With
N-(2-Methyl-1,3-Benzothiazol-6-Yl)-3-Ureido- Propanamide
And 2-(4-Bromophenoxy)propanedioic Acid
pdb|4AJH|B Chain B, Rat Ldha In Complex With
N-(2-Methyl-1,3-Benzothiazol-6-Yl)-3-Ureido- Propanamide
And 2-(4-Bromophenoxy)propanedioic Acid
pdb|4AJH|C Chain C, Rat Ldha In Complex With
N-(2-Methyl-1,3-Benzothiazol-6-Yl)-3-Ureido- Propanamide
And 2-(4-Bromophenoxy)propanedioic Acid
pdb|4AJH|D Chain D, Rat Ldha In Complex With
N-(2-Methyl-1,3-Benzothiazol-6-Yl)-3-Ureido- Propanamide
And 2-(4-Bromophenoxy)propanedioic Acid
pdb|4AJI|A Chain A, Rat Ldha In Complex With 2-((3,4-Dimethoxyphenyl)methyl))
Propanedioic Acid
pdb|4AJI|B Chain B, Rat Ldha In Complex With 2-((3,4-Dimethoxyphenyl)methyl))
Propanedioic Acid
pdb|4AJI|C Chain C, Rat Ldha In Complex With 2-((3,4-Dimethoxyphenyl)methyl))
Propanedioic Acid
pdb|4AJI|D Chain D, Rat Ldha In Complex With 2-((3,4-Dimethoxyphenyl)methyl))
Propanedioic Acid
pdb|4AJJ|A Chain A, Rat Ldha In Complex With 2-((3,4-Dimethoxyphenyl)methyl))
Propanedioic Acid And
N-(2-Methyl-1,3-Benzothiazol-6-Yl)-3- Ureido-Propanamide
pdb|4AJJ|B Chain B, Rat Ldha In Complex With 2-((3,4-Dimethoxyphenyl)methyl))
Propanedioic Acid And
N-(2-Methyl-1,3-Benzothiazol-6-Yl)-3- Ureido-Propanamide
pdb|4AJJ|C Chain C, Rat Ldha In Complex With 2-((3,4-Dimethoxyphenyl)methyl))
Propanedioic Acid And
N-(2-Methyl-1,3-Benzothiazol-6-Yl)-3- Ureido-Propanamide
pdb|4AJJ|D Chain D, Rat Ldha In Complex With 2-((3,4-Dimethoxyphenyl)methyl))
Propanedioic Acid And
N-(2-Methyl-1,3-Benzothiazol-6-Yl)-3- Ureido-Propanamide
pdb|4AJK|A Chain A, Rat Ldha In Complex With
N-(2-(Methylamino)-1,3-Benzothiazol-6-Yl) Acetamide
pdb|4AJK|B Chain B, Rat Ldha In Complex With
N-(2-(Methylamino)-1,3-Benzothiazol-6-Yl) Acetamide
pdb|4AJK|C Chain C, Rat Ldha In Complex With
N-(2-(Methylamino)-1,3-Benzothiazol-6-Yl) Acetamide
pdb|4AJK|D Chain D, Rat Ldha In Complex With
N-(2-(Methylamino)-1,3-Benzothiazol-6-Yl) Acetamide
pdb|4AJL|A Chain A, Rat Ldha In Complex With
3-(Ethylcarbamoylamino)-N-(2-Methyl-1,3-
Benzothiazol-6-Yl)propanamide
pdb|4AJL|B Chain B, Rat Ldha In Complex With
3-(Ethylcarbamoylamino)-N-(2-Methyl-1,3-
Benzothiazol-6-Yl)propanamide
pdb|4AJL|C Chain C, Rat Ldha In Complex With
3-(Ethylcarbamoylamino)-N-(2-Methyl-1,3-
Benzothiazol-6-Yl)propanamide
pdb|4AJL|D Chain D, Rat Ldha In Complex With
3-(Ethylcarbamoylamino)-N-(2-Methyl-1,3-
Benzothiazol-6-Yl)propanamide
pdb|4AJN|A Chain A, Rat Ldha In Complex With 2-((4-(2-((3-((2-Methyl-1,3-
Benzothiazol-6-Yl)amino)-3-Oxo-
Propyl)carbamoylamino)ethyl) Phenyl)methyl)propanedioic
Acid
pdb|4AJN|B Chain B, Rat Ldha In Complex With 2-((4-(2-((3-((2-Methyl-1,3-
Benzothiazol-6-Yl)amino)-3-Oxo-
Propyl)carbamoylamino)ethyl) Phenyl)methyl)propanedioic
Acid
pdb|4AJN|C Chain C, Rat Ldha In Complex With 2-((4-(2-((3-((2-Methyl-1,3-
Benzothiazol-6-Yl)amino)-3-Oxo-
Propyl)carbamoylamino)ethyl) Phenyl)methyl)propanedioic
Acid
pdb|4AJN|D Chain D, Rat Ldha In Complex With 2-((4-(2-((3-((2-Methyl-1,3-
Benzothiazol-6-Yl)amino)-3-Oxo-
Propyl)carbamoylamino)ethyl) Phenyl)methyl)propanedioic
Acid
pdb|4AJO|A Chain A, Rat Ldha In Complex With 2-((4-(4-((3-((2-Methyl-1,3-
Benzothiazol-6yl)amino)-3-Oxo-Propyl)amino)-4-Oxo-Butyl)
Phenyl)methyl)propanedioic Acid
pdb|4AJO|B Chain B, Rat Ldha In Complex With 2-((4-(4-((3-((2-Methyl-1,3-
Benzothiazol-6yl)amino)-3-Oxo-Propyl)amino)-4-Oxo-Butyl)
Phenyl)methyl)propanedioic Acid
pdb|4AJO|C Chain C, Rat Ldha In Complex With 2-((4-(4-((3-((2-Methyl-1,3-
Benzothiazol-6yl)amino)-3-Oxo-Propyl)amino)-4-Oxo-Butyl)
Phenyl)methyl)propanedioic Acid
pdb|4AJO|D Chain D, Rat Ldha In Complex With 2-((4-(4-((3-((2-Methyl-1,3-
Benzothiazol-6yl)amino)-3-Oxo-Propyl)amino)-4-Oxo-Butyl)
Phenyl)methyl)propanedioic Acid
pdb|4AL4|A Chain A, Rat Ldha In Complex With
2-((4-(2-((3-((2-Methyl-1,3-Benzothiazol-6-
Yl)amino)3-Oxo-Propyl)carbamoylamino)ethoxy) Phenyl)
Methylpropanedioic Acid
pdb|4AL4|B Chain B, Rat Ldha In Complex With
2-((4-(2-((3-((2-Methyl-1,3-Benzothiazol-6-
Yl)amino)3-Oxo-Propyl)carbamoylamino)ethoxy) Phenyl)
Methylpropanedioic Acid
pdb|4AL4|C Chain C, Rat Ldha In Complex With
2-((4-(2-((3-((2-Methyl-1,3-Benzothiazol-6-
Yl)amino)3-Oxo-Propyl)carbamoylamino)ethoxy) Phenyl)
Methylpropanedioic Acid
pdb|4AL4|D Chain D, Rat Ldha In Complex With
2-((4-(2-((3-((2-Methyl-1,3-Benzothiazol-6-
Yl)amino)3-Oxo-Propyl)carbamoylamino)ethoxy) Phenyl)
Methylpropanedioic Acid
Length = 331
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 83/330 (25%), Positives = 142/330 (43%), Gaps = 35/330 (10%)
Query: 45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--GVTADISH----MDTNAV 98
P K+ V+G G +G A+ + + L L L DV+ G D+ H + T +
Sbjct: 18 PQNKITVVGV-GAVGMACAISILMKDLADELALVDVIEDKLKGEMMDLQHGSLFLKTPKI 76
Query: 99 VRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAI 158
V + +VII AG ++ G +R +L N I K + + K P+
Sbjct: 77 VSS-----KDYSVTANSKLVIITAGARQQEGESRLNLVQRNVNIFKFIIPNVVKYSPQCK 131
Query: 159 VNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVP 217
+ ++SNPV+ I V K+ + R++G LD R + E LG+ P
Sbjct: 132 LLIVSNPVD----ILTYVAWKISGFPKNRVIGSGCNLDSARFRYLMGERLGVHPLSCHGW 187
Query: 218 VVGGHAGVTILPLLSQVKPS----CSLTP---TEIDY-----LTDRIQNGGTEVVEAKTG 265
V+G H G + +P+ S V + SL P T+ D + ++ + EV++ K
Sbjct: 188 VLGEH-GDSSVPVWSGVNVAGVSLKSLNPQLGTDADKEQWKDVHKQVVDSAYEVIKLK-- 244
Query: 266 AGSATLSMAYAAAKFADACLRGLRGDAGVIECAYVASTVTELPFFASKVRLGRAGIEEIY 325
G + ++ + A A++ ++ LR + + E F + LG+ GI ++
Sbjct: 245 -GYTSWAIGLSVADLAESIMKNLRRVHPISTMIKGLYGIKEDVFLSVPCILGQNGISDVV 303
Query: 326 SLGPLNEYERAGLEKAKKELAGSIQKGVSF 355
+ L E A L+K+ L G IQK + F
Sbjct: 304 KV-TLTPDEEARLKKSADTLWG-IQKELQF 331
>pdb|3PQD|A Chain A, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus
Subtilis Complexed With Fbp And Nad+
pdb|3PQD|B Chain B, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus
Subtilis Complexed With Fbp And Nad+
pdb|3PQD|C Chain C, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus
Subtilis Complexed With Fbp And Nad+
pdb|3PQD|D Chain D, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus
Subtilis Complexed With Fbp And Nad+
pdb|3PQD|E Chain E, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus
Subtilis Complexed With Fbp And Nad+
pdb|3PQD|F Chain F, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus
Subtilis Complexed With Fbp And Nad+
pdb|3PQD|G Chain G, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus
Subtilis Complexed With Fbp And Nad+
pdb|3PQD|H Chain H, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus
Subtilis Complexed With Fbp And Nad+
Length = 326
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 82/311 (26%), Positives = 126/311 (40%), Gaps = 44/311 (14%)
Query: 48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--GVTADISHMDTNA---VVRGF 102
KVA++GA G +G A + + L + DV G D++H A V +
Sbjct: 7 KVALIGA-GFVGSSYAFALINQGITDELVVIDVNKEKAMGDVMDLNHGKAFAPQPVKTSY 65
Query: 103 LGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLI 162
+ +DA DIV I AG +KPG TR +L N I K + + I +
Sbjct: 66 GTYEDCKDA----DIVCICAGANQKPGETRLELVEKNLKIFKGIVSEVMASGFDGIFLVA 121
Query: 163 SNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVGG 221
+NPV+ I K +R++G T LD R ++E G P+ V ++G
Sbjct: 122 TNPVD----ILTYATWKFSGLPKERVIGSGTTLDSARFRFMLSEYFGAAPQNVHAHIIGE 177
Query: 222 HAGVTILPLLSQ-----------VKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSAT 270
H G T LP+ S V+ + + E+D + D ++N ++E K G+
Sbjct: 178 H-GDTELPVWSHANVGGVPVSELVEKNDAYKQEELDQIVDDVKNAAYHIIEKK---GATY 233
Query: 271 LSMAYAAAKFADACLRGLRGDAGVIECAYVASTVTELPFFASKVRLG------RAGIEEI 324
+A + A+ A L ST + + A V +G R GI I
Sbjct: 234 YGVAMSLARITKAILHNEN-------SILTVSTYLDGQYGADDVYIGVPAVVNRGGIAGI 286
Query: 325 YSLGPLNEYER 335
L LNE E+
Sbjct: 287 TELN-LNEKEK 296
>pdb|9LDT|A Chain A, Design And Synthesis Of New Enzymes Based On The Lactate
Dehydrogenase Framework
pdb|9LDT|B Chain B, Design And Synthesis Of New Enzymes Based On The Lactate
Dehydrogenase Framework
pdb|9LDB|A Chain A, Design And Synthesis Of New Enzymes Based On The Lactate
Dehydrogenase Framework
pdb|9LDB|B Chain B, Design And Synthesis Of New Enzymes Based On The Lactate
Dehydrogenase Framework
Length = 332
Score = 58.9 bits (141), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 81/330 (24%), Positives = 140/330 (42%), Gaps = 35/330 (10%)
Query: 45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--GVTADISH----MDTNAV 98
P K+ V+G G +G A+ + + L + L DV+ G D+ H + T +
Sbjct: 19 PHNKITVVGV-GAVGMACAISILMKELADEIALVDVMEDKLKGEMMDLQHGSLFLRTPKI 77
Query: 99 VRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAI 158
V G + + +V+I AG ++ G +R +L N I K + I K P
Sbjct: 78 VSG-----KDYNVTANSRLVVITAGARQQEGESRLNLVQRNVNIFKFIIPNIVKYSPNCK 132
Query: 159 VNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVP 217
+ ++SNPV+ I V K+ + R++G LD R + E LG+ P
Sbjct: 133 LLVVSNPVD----ILTYVAWKISGFPKNRVIGSGCNLDSARFRYLMGERLGVHPLSCHGW 188
Query: 218 VVGGHAGVTILPLLSQVKPS-CSLTPTEIDYLTD-----------RIQNGGTEVVEAKTG 265
++G H G + +P+ S V + SL + TD + + EV++ K
Sbjct: 189 ILGEH-GDSSVPVWSGVNVAGVSLKNLHPELGTDADKEHWKAVHKEVVDSAYEVIKLK-- 245
Query: 266 AGSATLSMAYAAAKFADACLRGLRGDAGVIECAYVASTVTELPFFASKVRLGRAGIEEIY 325
G + ++ + A A++ ++ LR + + E F + LG+ GI ++
Sbjct: 246 -GYTSWAIGLSVADLAESIMKNLRRVHPISTMIKGLYGIKENVFLSVPCILGQNGISDVV 304
Query: 326 SLGPLNEYERAGLEKAKKELAGSIQKGVSF 355
+ L E A L+K+ L G IQK + F
Sbjct: 305 KV-TLTPEEEAHLKKSADTLWG-IQKELQF 332
>pdb|3PQE|A Chain A, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus
Subtilis With H171c Mutation
pdb|3PQE|B Chain B, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus
Subtilis With H171c Mutation
pdb|3PQE|C Chain C, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus
Subtilis With H171c Mutation
pdb|3PQE|D Chain D, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus
Subtilis With H171c Mutation
pdb|3PQF|A Chain A, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus
Subtilis Mutation H171c Complexed With Nad+
pdb|3PQF|B Chain B, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus
Subtilis Mutation H171c Complexed With Nad+
pdb|3PQF|C Chain C, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus
Subtilis Mutation H171c Complexed With Nad+
pdb|3PQF|D Chain D, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus
Subtilis Mutation H171c Complexed With Nad+
Length = 326
Score = 58.2 bits (139), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 83/311 (26%), Positives = 127/311 (40%), Gaps = 44/311 (14%)
Query: 48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--GVTADISHMDTNA---VVRGF 102
KVA++GA G +G A + + L + DV G D++H A V +
Sbjct: 7 KVALIGA-GFVGSSYAFALINQGITDELVVIDVNKEKAMGDVMDLNHGKAFAPQPVKTSY 65
Query: 103 LGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLI 162
+ +DA DIV I AG +KPG TR +L N I K + + I +
Sbjct: 66 GTYEDCKDA----DIVCICAGANQKPGETRLELVEKNLKIFKGIVSEVMASGFDGIFLVA 121
Query: 163 SNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVGG 221
+NPV+ I K +R++G T LD R ++E G P+ V ++G
Sbjct: 122 TNPVD----ILTYATWKFSGLPKERVIGSGTTLDSARFRFMLSEYFGAAPQNVCAHIIGE 177
Query: 222 HAGVTILPLLSQ-----------VKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSAT 270
H G T LP+ S V+ + + E+D + D ++N ++E K G+
Sbjct: 178 H-GDTELPVWSHANVGGVPVSELVEKNDAYKQEELDQIVDDVKNAAYHIIEKK---GATY 233
Query: 271 LSMAYAAAKFADACLRGLRGDAGVIECAYVASTVTELPFFASKVRLG------RAGIEEI 324
+A + A+ A L V ST + + A V +G R GI I
Sbjct: 234 YGVAMSLARITKAILHNENSILTV-------STYLDGQYGADDVYIGVPAVVNRGGIAGI 286
Query: 325 YSLGPLNEYER 335
L LNE E+
Sbjct: 287 TELN-LNEKEK 296
>pdb|2XXB|A Chain A, Penta-Mutant Of Thermus Thermophilus Lactate
Dehydrogenase, Complex With Amp
pdb|2XXB|B Chain B, Penta-Mutant Of Thermus Thermophilus Lactate
Dehydrogenase, Complex With Amp
pdb|2XXJ|A Chain A, Penta Mutant Of Lactate Dehydrogenase From Thermus
Thermophilus, Ternary Complex
pdb|2XXJ|B Chain B, Penta Mutant Of Lactate Dehydrogenase From Thermus
Thermophilus, Ternary Complex
pdb|2XXJ|C Chain C, Penta Mutant Of Lactate Dehydrogenase From Thermus
Thermophilus, Ternary Complex
pdb|2XXJ|D Chain D, Penta Mutant Of Lactate Dehydrogenase From Thermus
Thermophilus, Ternary Complex
pdb|3ZZN|A Chain A, 5-Mutant (R79w, R151a, E279a, E299a,E313a)
Lactate-Dehydrogenase From Thermus Thermophillus
pdb|3ZZN|B Chain B, 5-Mutant (R79w, R151a, E279a, E299a,E313a)
Lactate-Dehydrogenase From Thermus Thermophillus
pdb|3ZZN|C Chain C, 5-Mutant (R79w, R151a, E279a, E299a,E313a)
Lactate-Dehydrogenase From Thermus Thermophillus
pdb|3ZZN|D Chain D, 5-Mutant (R79w, R151a, E279a, E299a,E313a)
Lactate-Dehydrogenase From Thermus Thermophillus
Length = 310
Score = 58.2 bits (139), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 48/181 (26%), Positives = 84/181 (46%), Gaps = 22/181 (12%)
Query: 112 LTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVP 171
L G V++ AGV ++PG TR L + NA + + + + P+A++ + +NPV+
Sbjct: 65 LEGARAVVLAAGVAQRPGETRLQLLDRNAQVFAQVVPRVLEAAPEAVLLVATNPVD---- 120
Query: 172 IAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTIL-- 228
+ +V + P R++G T+LD R +AE L + P+ V V+G H +L
Sbjct: 121 VMTQVAYALSGLPPGRVVGSGTILDTARFRALLAEYLRVAPQSVHAYVLGEHGDSEVLVW 180
Query: 229 --------PLLSQVKPSC-SLTPTEIDYLTDRIQNGGTEVVEAK------TGAGSATLSM 273
PLL + +L+P + + + ++ ++E K GAG A L
Sbjct: 181 SSAQVGGVPLLEFAEARGRALSPEDRARIDEGVRRAAYRIIEGKGATYYGIGAGLARLVR 240
Query: 274 A 274
A
Sbjct: 241 A 241
>pdb|2LDX|A Chain A, Characterization Of The Antigenic Sites On The Refined 3-
Angstroms Resolution Structure Of Mouse Testicular
Lactate Dehydrogenase C4
pdb|2LDX|B Chain B, Characterization Of The Antigenic Sites On The Refined 3-
Angstroms Resolution Structure Of Mouse Testicular
Lactate Dehydrogenase C4
pdb|2LDX|C Chain C, Characterization Of The Antigenic Sites On The Refined 3-
Angstroms Resolution Structure Of Mouse Testicular
Lactate Dehydrogenase C4
pdb|2LDX|D Chain D, Characterization Of The Antigenic Sites On The Refined 3-
Angstroms Resolution Structure Of Mouse Testicular
Lactate Dehydrogenase C4
Length = 331
Score = 58.2 bits (139), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 63/252 (25%), Positives = 106/252 (42%), Gaps = 23/252 (9%)
Query: 117 IVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEV 176
+VII AG G TR DL N I+K + G+ + P + +++NPV+ I V
Sbjct: 90 LVIITAGARMVSGQTRLDLLQRNVAIMKAIVPGVIQNSPDCKIIVVTNPVD----ILTYV 145
Query: 177 FKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVK 235
K+ + R++G LD R + E LG++P V+G H G + +P+ S V
Sbjct: 146 VWKISGFPVGRVIGSGCNLDSARFRYLIGEKLGVNPTSCHGWVLGEH-GDSSVPIWSGVN 204
Query: 236 PS----CSLTPT--------EIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFADA 283
+ SL P + ++ GG EV++ K G + ++ + A +
Sbjct: 205 VAGVTLKSLNPAIGTDKNKQHWKNVHKQVVEGGYEVLDMK---GYTSWAIGLSVTDLARS 261
Query: 284 CLRGLRGDAGVIECAYVASTVTELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLEKAKK 343
L+ L+ V + E F + LG +GI + + E E GL K
Sbjct: 262 ILKNLKRVHPVTTLVKGFHGIKEEVFLSIPCVLGESGITDFVKVNMTAEEE--GLLKKSA 319
Query: 344 ELAGSIQKGVSF 355
+ ++QK +
Sbjct: 320 DTLWNMQKNLEL 331
>pdb|4H7P|A Chain A, Crystal Structure Of A Putative Cytosolic Malate
Dehydrogenase From Leishmania Major Friedlin
pdb|4H7P|B Chain B, Crystal Structure Of A Putative Cytosolic Malate
Dehydrogenase From Leishmania Major Friedlin
pdb|4I1I|A Chain A, Crystal Structure Of A Putative Cytosolic Malate
Dehydrogenase From Leishmania Major Friedlin In Complex
With Nad
pdb|4I1I|B Chain B, Crystal Structure Of A Putative Cytosolic Malate
Dehydrogenase From Leishmania Major Friedlin In Complex
With Nad
Length = 345
Score = 58.2 bits (139), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 60/223 (26%), Positives = 92/223 (41%), Gaps = 39/223 (17%)
Query: 26 IEGESSGLGRMDCRAKGGSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG 85
+E ++ G G M KVAV GAAG IG L L+ L+ P
Sbjct: 12 LEAQTQGPGSMSA--------VKVAVTGAAGQIGYALVPLIARGALLG----------PT 53
Query: 86 VTADISHMDTNAVVRGFLG-QQQLED-----------------ALTGMDIVIIPAGVPRK 127
++ +D ++ G + +LED A G+ I I+ PRK
Sbjct: 54 TPVELRLLDIEPALKALAGVEAELEDCAFPLLDKVVVTADPRVAFDGVAIAIMCGAFPRK 113
Query: 128 PGMTRDDLFNINAGIVKTLCEGIAKCCPKAI-VNLISNPVNSTVPIAAEVFKKVGTYDPK 186
GM R DL +NA I K E IA V ++ NP N+ I + + G +P+
Sbjct: 114 AGMERKDLLEMNARIFKEQGEAIAAVAASDCRVVVVGNPANTNALILLKSAQ--GKLNPR 171
Query: 187 RLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILP 229
+ +T LD RA + +A G+ +V ++ G+ T +P
Sbjct: 172 HVTAMTRLDHNRALSLLARKAGVPVSQVRNVIIWGNHSSTQVP 214
>pdb|3H3F|A Chain A, Rabbit Muscle L-Lactate Dehydrogenase In Complex With Nadh
And Oxamate
pdb|3H3F|B Chain B, Rabbit Muscle L-Lactate Dehydrogenase In Complex With Nadh
And Oxamate
pdb|3H3F|C Chain C, Rabbit Muscle L-Lactate Dehydrogenase In Complex With Nadh
And Oxamate
pdb|3H3F|D Chain D, Rabbit Muscle L-Lactate Dehydrogenase In Complex With Nadh
And Oxamate
pdb|3H3F|E Chain E, Rabbit Muscle L-Lactate Dehydrogenase In Complex With Nadh
And Oxamate
pdb|3H3F|F Chain F, Rabbit Muscle L-Lactate Dehydrogenase In Complex With Nadh
And Oxamate
pdb|3H3F|G Chain G, Rabbit Muscle L-Lactate Dehydrogenase In Complex With Nadh
And Oxamate
pdb|3H3F|H Chain H, Rabbit Muscle L-Lactate Dehydrogenase In Complex With Nadh
And Oxamate
pdb|4I8X|A Chain A, Crystal Structure Of Rabbit Ldha In Complex With Ap27460
pdb|4I8X|B Chain B, Crystal Structure Of Rabbit Ldha In Complex With Ap27460
pdb|4I8X|C Chain C, Crystal Structure Of Rabbit Ldha In Complex With Ap27460
pdb|4I8X|D Chain D, Crystal Structure Of Rabbit Ldha In Complex With Ap27460
pdb|4I8X|E Chain E, Crystal Structure Of Rabbit Ldha In Complex With Ap27460
pdb|4I8X|F Chain F, Crystal Structure Of Rabbit Ldha In Complex With Ap27460
pdb|4I8X|G Chain G, Crystal Structure Of Rabbit Ldha In Complex With Ap27460
pdb|4I8X|H Chain H, Crystal Structure Of Rabbit Ldha In Complex With Ap27460
pdb|4I9H|A Chain A, Crystal Structure Of Rabbit Ldha In Complex With Ap28669
pdb|4I9H|B Chain B, Crystal Structure Of Rabbit Ldha In Complex With Ap28669
pdb|4I9H|C Chain C, Crystal Structure Of Rabbit Ldha In Complex With Ap28669
pdb|4I9H|D Chain D, Crystal Structure Of Rabbit Ldha In Complex With Ap28669
pdb|4I9H|E Chain E, Crystal Structure Of Rabbit Ldha In Complex With Ap28669
pdb|4I9H|F Chain F, Crystal Structure Of Rabbit Ldha In Complex With Ap28669
pdb|4I9H|G Chain G, Crystal Structure Of Rabbit Ldha In Complex With Ap28669
pdb|4I9H|H Chain H, Crystal Structure Of Rabbit Ldha In Complex With Ap28669
pdb|4I9N|A Chain A, Crystal Structure Of Rabbit Ldha In Complex With Ap28161
And Ap28122
pdb|4I9N|B Chain B, Crystal Structure Of Rabbit Ldha In Complex With Ap28161
And Ap28122
pdb|4I9N|C Chain C, Crystal Structure Of Rabbit Ldha In Complex With Ap28161
And Ap28122
pdb|4I9N|D Chain D, Crystal Structure Of Rabbit Ldha In Complex With Ap28161
And Ap28122
pdb|4I9N|E Chain E, Crystal Structure Of Rabbit Ldha In Complex With Ap28161
And Ap28122
pdb|4I9N|F Chain F, Crystal Structure Of Rabbit Ldha In Complex With Ap28161
And Ap28122
pdb|4I9N|G Chain G, Crystal Structure Of Rabbit Ldha In Complex With Ap28161
And Ap28122
pdb|4I9N|H Chain H, Crystal Structure Of Rabbit Ldha In Complex With Ap28161
And Ap28122
pdb|4I9U|A Chain A, Crystal Structure Of Rabbit Ldha In Complex With A
Fragment Inhibitor Ap26256
pdb|4I9U|B Chain B, Crystal Structure Of Rabbit Ldha In Complex With A
Fragment Inhibitor Ap26256
pdb|4I9U|C Chain C, Crystal Structure Of Rabbit Ldha In Complex With A
Fragment Inhibitor Ap26256
pdb|4I9U|D Chain D, Crystal Structure Of Rabbit Ldha In Complex With A
Fragment Inhibitor Ap26256
pdb|4I9U|E Chain E, Crystal Structure Of Rabbit Ldha In Complex With A
Fragment Inhibitor Ap26256
pdb|4I9U|F Chain F, Crystal Structure Of Rabbit Ldha In Complex With A
Fragment Inhibitor Ap26256
pdb|4I9U|G Chain G, Crystal Structure Of Rabbit Ldha In Complex With A
Fragment Inhibitor Ap26256
pdb|4I9U|H Chain H, Crystal Structure Of Rabbit Ldha In Complex With A
Fragment Inhibitor Ap26256
Length = 331
Score = 57.8 bits (138), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 81/330 (24%), Positives = 139/330 (42%), Gaps = 35/330 (10%)
Query: 45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--GVTADISH----MDTNAV 98
P K+ V+G G +G A+ + + L L L DV+ G D+ H + T +
Sbjct: 18 PQNKITVVGV-GAVGMACAISILMKDLADELALVDVMEDKLKGEMMDLQHGSLFLRTPKI 76
Query: 99 VRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAI 158
V G + +VII AG ++ G +R +L N I K + + K P
Sbjct: 77 VSG-----KDYSVTANSKLVIITAGARQQEGESRLNLVQRNVNIFKFIIPNVVKYSPHCK 131
Query: 159 VNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVP 217
+ ++SNPV+ I V K+ + R++G LD R + E LG+
Sbjct: 132 LLVVSNPVD----ILTYVAWKISGFPKNRVIGSGCNLDSARFRYLMGERLGVHALSCHGW 187
Query: 218 VVGGHAGVTILPLLSQVKPS-CSLTPTEIDYLTD-----------RIQNGGTEVVEAKTG 265
++G H G + +P+ S + + SL + TD ++ + EV++ K
Sbjct: 188 ILGEH-GDSSVPVWSGMNVAGVSLKTLHPELGTDADKEQWKQVHKQVVDSAYEVIKLK-- 244
Query: 266 AGSATLSMAYAAAKFADACLRGLRGDAGVIECAYVASTVTELPFFASKVRLGRAGIEEIY 325
G T ++ + A A++ ++ LR + + E F + LG+ GI ++
Sbjct: 245 -GYTTWAIGLSVADLAESIMKNLRRVHPISTMLKGLYGIKEDVFLSVPCVLGQNGISDVV 303
Query: 326 SLGPLNEYERAGLEKAKKELAGSIQKGVSF 355
+ L E A L+K+ L G IQK + F
Sbjct: 304 KV-TLTSEEEAHLKKSADTLWG-IQKELQF 331
>pdb|1V6A|A Chain A, Crystal Structure Of L-Lactate Dehydrogenase From Cyprinus
Carpio
pdb|1V6A|B Chain B, Crystal Structure Of L-Lactate Dehydrogenase From Cyprinus
Carpio
Length = 332
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 62/251 (24%), Positives = 108/251 (43%), Gaps = 21/251 (8%)
Query: 117 IVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEV 176
+V++ AG ++ G +R +L N I K + I K P I+ ++SNPV+ I V
Sbjct: 91 VVVVTAGARQQEGESRLNLVQRNVNIFKFIIPNIIKYSPNCILLVVSNPVD----ILTYV 146
Query: 177 FKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVGGH--------AGVTI 227
K+ R++G T LD R + E LG+ P V+G H +GV +
Sbjct: 147 AWKLSGLPRNRVIGSGTNLDSARFRHLMGEKLGIHPSNCHGWVIGEHGDSSVPVWSGVNV 206
Query: 228 LPLLSQ-VKPSCSLTPTEIDY--LTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFADAC 284
+ Q + P + D+ + + + EV++ K G + ++ +AA +
Sbjct: 207 AGVFLQGLNPDMGTDKDKEDWKSVHKMVVDSAYEVIKLK---GYTSWAIGMSAADLCQSI 263
Query: 285 LRGLRGDAGVIECAYVASTVTELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLEKAKKE 344
L+ LR V V E F + LG +G+ ++ + L E L K+ +
Sbjct: 264 LKNLRKCHPVSTLVKGMHGVNEEVFLSVPCILGNSGLTDVVHM-TLKSDEEKQLVKSAET 322
Query: 345 LAGSIQKGVSF 355
L G +QK ++
Sbjct: 323 LWG-VQKDLTL 332
>pdb|1EZ4|A Chain A, Crystal Structure Of Non-Allosteric L-Lactate
Dehydrogenase From Lactobacillus Pentosus At 2.3
Angstrom Resolution
pdb|1EZ4|B Chain B, Crystal Structure Of Non-Allosteric L-Lactate
Dehydrogenase From Lactobacillus Pentosus At 2.3
Angstrom Resolution
pdb|1EZ4|C Chain C, Crystal Structure Of Non-Allosteric L-Lactate
Dehydrogenase From Lactobacillus Pentosus At 2.3
Angstrom Resolution
pdb|1EZ4|D Chain D, Crystal Structure Of Non-Allosteric L-Lactate
Dehydrogenase From Lactobacillus Pentosus At 2.3
Angstrom Resolution
Length = 318
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 64/260 (24%), Positives = 111/260 (42%), Gaps = 28/260 (10%)
Query: 45 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDT-NAVVRG 101
P + VL G +G A M + + DVV T G D+ A +
Sbjct: 3 PNHQKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALDLEDAQAFTAPKKI 62
Query: 102 FLGQ-QQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVN 160
+ G+ +DA D+V+I AG P+KPG +R DL N N I+ ++ + + I
Sbjct: 63 YSGEYSDCKDA----DLVVITAGAPQKPGESRLDLVNKNLNILSSIVKPVVDSGFDGIFL 118
Query: 161 LISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVV 219
+ +NPV+ I K + +R++G T LD R + + +DPR VD ++
Sbjct: 119 VAANPVD----ILTYATWKFSGFPKERVIGSGTSLDSSRLRVALGKQFNVDPRSVDAYIM 174
Query: 220 GGH----------AGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAK----TG 265
G H A + P + V ++ ++ L D ++N +++ K G
Sbjct: 175 GEHGDSEFAAYSTATIGTRP-VRDVAKEQGVSDDDLAKLEDGVRNKAYDIINLKGATFYG 233
Query: 266 AGSATLSMAYAAAKFADACL 285
G+A + ++ A + +A L
Sbjct: 234 IGTALMRISKAILRDENAVL 253
>pdb|2V65|A Chain A, Apo Ldh From The Psychrophile C. Gunnari
pdb|2V65|B Chain B, Apo Ldh From The Psychrophile C. Gunnari
Length = 331
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 62/252 (24%), Positives = 111/252 (44%), Gaps = 23/252 (9%)
Query: 117 IVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEV 176
+V++ AG ++ G +R +L N I K + I K P I+ ++SNPV+ I V
Sbjct: 90 VVVVTAGARQQEGESRLNLVQRNVNIFKFIIPNIVKYSPNCILMVVSNPVD----ILTYV 145
Query: 177 FKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVK 235
K+ + R++G T LD R + E L L P +VG H G + +P+ S V
Sbjct: 146 AWKLSGFPRHRVIGSGTNLDSARFRHLIGEKLHLHPSSCHAWIVGEH-GDSSVPVWSGVN 204
Query: 236 PS----CSLTP---TEID-----YLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFADA 283
+ L P TE D + + +G EV++ K G + ++ + A ++
Sbjct: 205 VAGVSLQGLNPQMGTEGDGENWKAIHKEVVDGAYEVIKLK---GYTSWAIGMSVADLVES 261
Query: 284 CLRGLRGDAGVIECAYVASTVTELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLEKAKK 343
++ + V V + F + LG +G+ ++ + L E L+K+ +
Sbjct: 262 IIKNMHKVHPVSTLVQGMHGVKDEVFLSVPCVLGNSGLTDVIHM-TLKAEEEKQLQKSAE 320
Query: 344 ELAGSIQKGVSF 355
L G +QK ++
Sbjct: 321 TLWG-VQKELTL 331
>pdb|2X0I|A Chain A, 2.9 A Resolution Structure Of Malate Dehydrogenase From
Archaeoglobus Fulgidus In Complex With Nadh
pdb|2X0J|A Chain A, 2.8 A Resolution Structure Of Malate Dehydrogenase From
Archaeoglobus Fulgidus In Complex With Etheno-Nad
Length = 294
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 49/85 (57%), Gaps = 8/85 (9%)
Query: 112 LTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVP 171
L G +I+++ AG+ RKPGMTR DL + NAGI+K + + I + P++ + +++NP++
Sbjct: 67 LKGSEIIVVTAGLARKPGMTRLDLAHKNAGIIKDIAKKIVENAPESKILVVTNPMDVMTY 126
Query: 172 IAA--------EVFKKVGTYDPKRL 188
I EVF D +RL
Sbjct: 127 IMWKESGKPRNEVFGMGNQLDSQRL 151
>pdb|1LLD|A Chain A, Molecular Basis Of Allosteric Activation Of Bacterial
L-Lactate Dehydrogenase
pdb|1LLD|B Chain B, Molecular Basis Of Allosteric Activation Of Bacterial
L-Lactate Dehydrogenase
pdb|1LTH|T Chain T, T And R States In The Crystals Of Bacterial L-Lactate
Dehydrogenase Reveal The Mechanism For Allosteric
Control
pdb|1LTH|R Chain R, T And R States In The Crystals Of Bacterial L-Lactate
Dehydrogenase Reveal The Mechanism For Allosteric
Control
Length = 319
Score = 55.5 bits (132), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 41/132 (31%), Positives = 63/132 (47%), Gaps = 10/132 (7%)
Query: 116 DIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAE 175
D+V+I AG +KPG +R +L I+K + + K P AI LI+NPV+ IA
Sbjct: 77 DMVVITAGPRQKPGQSRLELVGATVNILKAIMPNLVKVAPNAIYMLITNPVD----IATH 132
Query: 176 VFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQV 234
V +K+ ++ G T LD R +A+ G++ + V + G H G + +PL
Sbjct: 133 VAQKLTGLPENQIFGSGTNLDSARLRFLIAQQTGVNVKNVHAYIAGEH-GDSEVPLWESA 191
Query: 235 K----PSCSLTP 242
P TP
Sbjct: 192 TIGGVPMSDWTP 203
>pdb|1LDB|A Chain A, Structure Determination And Refinement Of Bacillus
Stearothermophilus Lactate Dehydrogenase
pdb|1LDB|B Chain B, Structure Determination And Refinement Of Bacillus
Stearothermophilus Lactate Dehydrogenase
pdb|1LDB|C Chain C, Structure Determination And Refinement Of Bacillus
Stearothermophilus Lactate Dehydrogenase
pdb|1LDB|D Chain D, Structure Determination And Refinement Of Bacillus
Stearothermophilus Lactate Dehydrogenase
pdb|2LDB|A Chain A, Structure Determination And Refinement Of Bacillus
Stearothermophilus Lactate Dehydrogenase
pdb|2LDB|B Chain B, Structure Determination And Refinement Of Bacillus
Stearothermophilus Lactate Dehydrogenase
pdb|2LDB|C Chain C, Structure Determination And Refinement Of Bacillus
Stearothermophilus Lactate Dehydrogenase
pdb|2LDB|D Chain D, Structure Determination And Refinement Of Bacillus
Stearothermophilus Lactate Dehydrogenase
Length = 317
Score = 55.5 bits (132), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 59/252 (23%), Positives = 109/252 (43%), Gaps = 24/252 (9%)
Query: 116 DIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAE 175
D+V+I AG +KPG TR DL + N I +++ E + + + + +NPV+ I
Sbjct: 76 DLVVICAGANQKPGETRLDLVDKNIAIFRSIVESVMASGFQGLFLVATNPVD----ILTY 131
Query: 176 VFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQ- 233
K +R++G T+LD R + E + P+ V ++G H G T LP+ SQ
Sbjct: 132 ATWKFSGLPHERVIGSGTILDTARFRFLLGEYFSVAPQNVHAYIIGEH-GDTELPVWSQA 190
Query: 234 ---VKPSCSLTPT-------EIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFADA 283
V P L + +++ + +++ +++E K G+ +A A+ A
Sbjct: 191 YIGVMPIRKLVESKGEEAQKDLERIFVNVRDAAYQIIEKK---GATYYGIAMGLARVTRA 247
Query: 284 CLRGLRGDAGVIECAYVASTVTELP-FFASKVRLGRAGIEEIYSLGPLNEYERAGLEKAK 342
L +A + AY+ E + + R GI E+ + LN+ E+ +
Sbjct: 248 ILHN--ENAILTVSAYLDGLYGERDVYIGVPAVINRNGIREVIEI-ELNDDEKNRFHHSA 304
Query: 343 KELAGSIQKGVS 354
L + + +
Sbjct: 305 ATLKSVLARAFT 316
>pdb|1LDN|A Chain A, Structure Of A Ternary Complex Of An Allosteric Lactate
Dehydrogenase From Bacillus Stearothermophilus At 2.5
Angstroms Resolution
pdb|1LDN|B Chain B, Structure Of A Ternary Complex Of An Allosteric Lactate
Dehydrogenase From Bacillus Stearothermophilus At 2.5
Angstroms Resolution
pdb|1LDN|C Chain C, Structure Of A Ternary Complex Of An Allosteric Lactate
Dehydrogenase From Bacillus Stearothermophilus At 2.5
Angstroms Resolution
pdb|1LDN|D Chain D, Structure Of A Ternary Complex Of An Allosteric Lactate
Dehydrogenase From Bacillus Stearothermophilus At 2.5
Angstroms Resolution
pdb|1LDN|E Chain E, Structure Of A Ternary Complex Of An Allosteric Lactate
Dehydrogenase From Bacillus Stearothermophilus At 2.5
Angstroms Resolution
pdb|1LDN|F Chain F, Structure Of A Ternary Complex Of An Allosteric Lactate
Dehydrogenase From Bacillus Stearothermophilus At 2.5
Angstroms Resolution
pdb|1LDN|G Chain G, Structure Of A Ternary Complex Of An Allosteric Lactate
Dehydrogenase From Bacillus Stearothermophilus At 2.5
Angstroms Resolution
pdb|1LDN|H Chain H, Structure Of A Ternary Complex Of An Allosteric Lactate
Dehydrogenase From Bacillus Stearothermophilus At 2.5
Angstroms Resolution
Length = 316
Score = 55.1 bits (131), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 59/252 (23%), Positives = 109/252 (43%), Gaps = 24/252 (9%)
Query: 116 DIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAE 175
D+V+I AG +KPG TR DL + N I +++ E + + + + +NPV+ I
Sbjct: 76 DLVVICAGANQKPGETRLDLVDKNIAIFRSIVESVMASGFQGLFLVATNPVD----ILTY 131
Query: 176 VFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQ- 233
K +R++G T+LD R + E + P+ V ++G H G T LP+ SQ
Sbjct: 132 ATWKFSGLPHERVIGSGTILDTARFRFLLGEYFSVAPQNVHAYIIGEH-GDTELPVWSQA 190
Query: 234 ---VKPSCSLTPT-------EIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFADA 283
V P L + +++ + +++ +++E K G+ +A A+ A
Sbjct: 191 YIGVMPIRKLVESKGEEAQKDLERIFVNVRDAAYQIIEKK---GATYYGIAMGLARVTRA 247
Query: 284 CLRGLRGDAGVIECAYVASTVTELP-FFASKVRLGRAGIEEIYSLGPLNEYERAGLEKAK 342
L +A + AY+ E + + R GI E+ + LN+ E+ +
Sbjct: 248 ILHN--ENAILTVSAYLDGLYGERDVYIGVPAVINRNGIREVIEI-ELNDDEKNRFHHSA 304
Query: 343 KELAGSIQKGVS 354
L + + +
Sbjct: 305 ATLKSVLARAFT 316
>pdb|1BMD|A Chain A, Determinants Of Protein Thermostability Observed In The
1.9 Angstroms Crystal Structure Of Malate Dehydrogenase
From The Thermophilic Bacterium Thermus Flavus
pdb|1BMD|B Chain B, Determinants Of Protein Thermostability Observed In The
1.9 Angstroms Crystal Structure Of Malate Dehydrogenase
From The Thermophilic Bacterium Thermus Flavus
Length = 327
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 56/213 (26%), Positives = 86/213 (40%), Gaps = 22/213 (10%)
Query: 48 KVAVLGAAGGIGQPL-------AMLMKINPLVSVLHLYDVVNT----PGVTADISHMDTN 96
+VAV GAAG IG L ML K P+ +L L ++ GV ++
Sbjct: 6 RVAVTGAAGQIGYSLLFRIAAGEMLGKDQPV--ILQLLEIPQAMKALEGVVMELEDC-AF 62
Query: 97 AVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPK 156
++ G + A D ++ PRK GM R DL +N I +A+ K
Sbjct: 63 PLLAGLEATDDPDVAFKDADYALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEVAKK 122
Query: 157 AI-VNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVD 215
+ V ++ NP N+ IA +K +P+ +T LD RA +A+ G +
Sbjct: 123 DVKVLVVGNPANTNALIA---YKNAPGLNPRNFTAMTRLDHNRAKAQLAKKTGTGVDRIR 179
Query: 216 VPVVGGHAGVTILPLLSQV----KPSCSLTPTE 244
V G+ T+ P L +P+ L E
Sbjct: 180 RMTVWGNHSSTMFPDLFHAEVDGRPALELVDME 212
>pdb|1IZ9|A Chain A, Crystal Structure Of Malate Dehydrogenase From Thermus
Thermophilus Hb8
pdb|1IZ9|B Chain B, Crystal Structure Of Malate Dehydrogenase From Thermus
Thermophilus Hb8
pdb|1Y7T|A Chain A, Crystal Structure Of Nad(H)-Depenent Malate Dehydrogenase
Complexed With Nadph
pdb|1Y7T|B Chain B, Crystal Structure Of Nad(H)-Depenent Malate Dehydrogenase
Complexed With Nadph
pdb|2CVQ|A Chain A, Crystal Structure Of Nad(H)-Dependent Malate Dehydrogenase
Complexed With Nadph
pdb|2CVQ|B Chain B, Crystal Structure Of Nad(H)-Dependent Malate Dehydrogenase
Complexed With Nadph
Length = 327
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 55/212 (25%), Positives = 84/212 (39%), Gaps = 20/212 (9%)
Query: 48 KVAVLGAAGGIGQPL-------AMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVR 100
+VAV GAAG IG L ML K P+ +L L ++ + +
Sbjct: 6 RVAVTGAAGQIGYSLLFRIAAGEMLGKDQPV--ILQLLEIPQAMKALEGVVMELEDCAFP 63
Query: 101 GFLGQQQLED---ALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKA 157
G + +D A D ++ PRK GM R DL +N I +A+ K
Sbjct: 64 LLAGLEATDDPKVAFKDADYALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEVAKKD 123
Query: 158 I-VNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDV 216
+ V ++ NP N+ IA +K +P+ +T LD RA +A+ G +
Sbjct: 124 VKVLVVGNPANTNALIA---YKNAPGLNPRNFTAMTRLDHNRAKAQLAKKTGTGVDRIRR 180
Query: 217 PVVGGHAGVTILPLLSQV----KPSCSLTPTE 244
V G+ T+ P L +P+ L E
Sbjct: 181 MTVWGNHSSTMFPDLFHAEVDGRPALELVDME 212
>pdb|2V6B|A Chain A, Crystal Structure Of Lactate Dehydrogenase From
Deinococcus Radiodurans (Apo Form)
pdb|2V6B|B Chain B, Crystal Structure Of Lactate Dehydrogenase From
Deinococcus Radiodurans (Apo Form)
pdb|2V6B|C Chain C, Crystal Structure Of Lactate Dehydrogenase From
Deinococcus Radiodurans (Apo Form)
pdb|2V6B|D Chain D, Crystal Structure Of Lactate Dehydrogenase From
Deinococcus Radiodurans (Apo Form)
Length = 304
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 53/201 (26%), Positives = 84/201 (41%), Gaps = 31/201 (15%)
Query: 104 GQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS 163
G +L DA +VI+ AG +KPG +R DL NA I + L I + P A++ + S
Sbjct: 61 GHSELADA----QVVILTAGANQKPGESRLDLLEKNADIFRELVPQITRAAPDAVLLVTS 116
Query: 164 NPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVGGH 222
NPV+ +A ++ + ++G T+LD R +A+ G+D V+G H
Sbjct: 117 NPVDLLTDLATQLAPG------QPVIGSGTVLDSARFRHLMAQHAGVDGTHAHGYVLGEH 170
Query: 223 AGVTILPLLS--------------QVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGS 268
+L S Q P +ID T +N ++E K +
Sbjct: 171 GDSEVLAWSSAMVAGMPVADFMQAQNLPWNEQVRAKIDEGT---RNAAASIIEGKR---A 224
Query: 269 ATLSMAYAAAKFADACLRGLR 289
+ A A+ +A LR R
Sbjct: 225 TYYGIGAALARITEAVLRDRR 245
>pdb|1WZE|A Chain A, Structural Basis For Alteration Of Cofactor Specificity Of
Malate Dehydrogenase From Thermus Flavus
pdb|1WZE|B Chain B, Structural Basis For Alteration Of Cofactor Specificity Of
Malate Dehydrogenase From Thermus Flavus
pdb|1WZI|A Chain A, Structural Basis For Alteration Of Cofactor Specificity Of
Malate Dehydrogenase From Thermus Flavus
pdb|1WZI|B Chain B, Structural Basis For Alteration Of Cofactor Specificity Of
Malate Dehydrogenase From Thermus Flavus
Length = 327
Score = 52.0 bits (123), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 55/211 (26%), Positives = 86/211 (40%), Gaps = 18/211 (8%)
Query: 48 KVAVLGAAGGIGQPL-------AMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNA--V 98
+VAV GAAG IG L ML K P++ L L + + + ++ A +
Sbjct: 6 RVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQL-LGSERSFQALEGVVMELEDCAFPL 64
Query: 99 VRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAI 158
+ G + A D ++ PRK GM R DL +N I +A+ K +
Sbjct: 65 LAGLEATDDPKVAFKDADYALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEVAKKDV 124
Query: 159 -VNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVP 217
V ++ NP N+ IA +K +P+ +T LD RA +A+ G +
Sbjct: 125 KVLVVGNPANTNALIA---YKNAPGLNPRNFTAMTRLDHNRAKAQLAKKTGTGVDRIRRM 181
Query: 218 VVGGHAGVTILPLLSQV----KPSCSLTPTE 244
V G+ T+ P L +P+ L E
Sbjct: 182 TVWGNHSSTMFPDLFHAEVDGRPALELVDME 212
>pdb|1BDM|A Chain A, The Structure At 1.8 Angstroms Resolution Of A Single Site
Mutant (T189i) Of Malate Dehydrogenase From Thermus
Flavus With Increased Enzymatic Activity
pdb|1BDM|B Chain B, The Structure At 1.8 Angstroms Resolution Of A Single Site
Mutant (T189i) Of Malate Dehydrogenase From Thermus
Flavus With Increased Enzymatic Activity
Length = 327
Score = 51.2 bits (121), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 55/213 (25%), Positives = 85/213 (39%), Gaps = 22/213 (10%)
Query: 48 KVAVLGAAGGIGQPL-------AMLMKINPLVSVLHLYDVVNT----PGVTADISHMDTN 96
+VAV GAAG IG L ML K P+ +L L ++ GV ++
Sbjct: 6 RVAVTGAAGQIGYSLLFRIAAGEMLGKDQPV--ILQLLEIPQAMKALEGVVMELEDC-AF 62
Query: 97 AVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPK 156
++ G + A D ++ PRK GM R DL +N I +A+ K
Sbjct: 63 PLLAGLEATDDPDVAFKDADYALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEVAKK 122
Query: 157 AI-VNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVD 215
+ V ++ NP N+ IA +K +P+ +T LD RA +A+ G +
Sbjct: 123 DVKVLVVGNPANTNALIA---YKNAPGLNPRNFTAMTRLDHNRAKAQLAKKTGTGVDRIR 179
Query: 216 VPVVGGHAGVTILPLLSQV----KPSCSLTPTE 244
V G+ + P L +P+ L E
Sbjct: 180 RMTVWGNHSSIMFPDLFHAEVDGRPALELVDME 212
>pdb|4MDH|A Chain A, Refined Crystal Structure Of Cytoplasmic Malate
Dehydrogenase At 2.5-Angstroms Resolution
pdb|4MDH|B Chain B, Refined Crystal Structure Of Cytoplasmic Malate
Dehydrogenase At 2.5-Angstroms Resolution
Length = 334
Score = 51.2 bits (121), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 77/331 (23%), Positives = 140/331 (42%), Gaps = 53/331 (16%)
Query: 53 GAAGGIGQPLAM-LMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDA 111
G+ G QP+ + L+ I P++ VL GV ++ +++ + + E A
Sbjct: 27 GSVFGKDQPIILVLLDITPMMGVLD--------GVLMELQDC-ALPLLKDVIATDKEEIA 77
Query: 112 LTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIA--KCCPKAI-VNLISNPVNS 168
+D+ I+ +PR+ GM R DL N I K C+G A K K++ V ++ NP N+
Sbjct: 78 FKDLDVAILVGSMPRRDGMERKDLLKANVKIFK--CQGAALDKYAKKSVKVIVVGNPANT 135
Query: 169 TVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTIL 228
A+ K + + +T LD RA +A LG+ +V ++ G+ T
Sbjct: 136 NCLTAS---KSAPSIPKENFSCLTRLDHNRAKAQIALKLGVTSDDVKNVIIWGNHSSTQY 192
Query: 229 PLLSQVKPSCSLTPTEI--------------DYLTDRIQNGGTEVVEAKTGAGSATLSMA 274
P ++ K L E+ +++T +Q G V++A+ LS A
Sbjct: 193 PDVNHAK--VKLQAKEVGVYEAVKDDSWLKGEFIT-TVQQRGAAVIKAR------KLSSA 243
Query: 275 YAAAKFADACLRGLRGDAGVIECAYVASTVTE------LP---FFASKVRLGRAGIEEIY 325
+AAK +R + G E +V+ + +P ++ V + + +
Sbjct: 244 MSAAKAICDHVRDIW--FGTPEGEFVSMGIISDGNSYGVPDDLLYSFPVTIKDKTWKIVE 301
Query: 326 SLGPLNEYERAGLEKAKKELAGSIQKGVSFV 356
L P+N++ R ++ KELA + F+
Sbjct: 302 GL-PINDFSREKMDLTAKELAEEKETAFEFL 331
>pdb|5MDH|A Chain A, Crystal Structure Of Ternary Complex Of Porcine
Cytoplasmic Malate Dehydrogenase Alpha-Ketomalonate And
Tnad At 2.4 Angstroms Resolution
pdb|5MDH|B Chain B, Crystal Structure Of Ternary Complex Of Porcine
Cytoplasmic Malate Dehydrogenase Alpha-Ketomalonate And
Tnad At 2.4 Angstroms Resolution
Length = 333
Score = 51.2 bits (121), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 77/331 (23%), Positives = 140/331 (42%), Gaps = 53/331 (16%)
Query: 53 GAAGGIGQPLAM-LMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDA 111
G+ G QP+ + L+ I P++ VL GV ++ +++ + + E A
Sbjct: 26 GSVFGKDQPIILVLLDITPMMGVLD--------GVLMELQDC-ALPLLKDVIATDKEEIA 76
Query: 112 LTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIA--KCCPKAI-VNLISNPVNS 168
+D+ I+ +PR+ GM R DL N I K C+G A K K++ V ++ NP N+
Sbjct: 77 FKDLDVAILVGSMPRRDGMERKDLLKANVKIFK--CQGAALDKYAKKSVKVIVVGNPANT 134
Query: 169 TVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTIL 228
A+ K + + +T LD RA +A LG+ +V ++ G+ T
Sbjct: 135 NCLTAS---KSAPSIPKENFSCLTRLDHNRAKAQIALKLGVTSDDVKNVIIWGNHSSTQY 191
Query: 229 PLLSQVKPSCSLTPTEI--------------DYLTDRIQNGGTEVVEAKTGAGSATLSMA 274
P ++ K L E+ +++T +Q G V++A+ LS A
Sbjct: 192 PDVNHAK--VKLQAKEVGVYEAVKDDSWLKGEFIT-TVQQRGAAVIKAR------KLSSA 242
Query: 275 YAAAKFADACLRGLRGDAGVIECAYVASTVTE------LP---FFASKVRLGRAGIEEIY 325
+AAK +R + G E +V+ + +P ++ V + + +
Sbjct: 243 MSAAKAICDHVRDIW--FGTPEGEFVSMGIISDGNSYGVPDDLLYSFPVTIKDKTWKIVE 300
Query: 326 SLGPLNEYERAGLEKAKKELAGSIQKGVSFV 356
L P+N++ R ++ KELA + F+
Sbjct: 301 GL-PINDFSREKMDLTAKELAEEKETAFEFL 330
>pdb|1T2F|A Chain A, Human B Lactate Dehydrogenase Complexed With Nad+ And 4-
Hydroxy-1,2,5-Oxadiazole-3-Carboxylic Acid
pdb|1T2F|B Chain B, Human B Lactate Dehydrogenase Complexed With Nad+ And 4-
Hydroxy-1,2,5-Oxadiazole-3-Carboxylic Acid
pdb|1T2F|C Chain C, Human B Lactate Dehydrogenase Complexed With Nad+ And 4-
Hydroxy-1,2,5-Oxadiazole-3-Carboxylic Acid
pdb|1T2F|D Chain D, Human B Lactate Dehydrogenase Complexed With Nad+ And 4-
Hydroxy-1,2,5-Oxadiazole-3-Carboxylic Acid
Length = 333
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 54/112 (48%), Gaps = 5/112 (4%)
Query: 117 IVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEV 176
IV++ AGV ++ G +R +L N + K + I K P I+ ++SNPV+ I V
Sbjct: 91 IVVVTAGVRQQEGESRLNLVQRNVNVFKFIIPQIVKYSPDCIIIVVSNPVD----ILTYV 146
Query: 177 FKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTI 227
K+ R++G LD R +AE LG+ P ++G H ++
Sbjct: 147 TWKLSGLPKHRVIGSGCNLDSARFRYLMAEKLGIHPSSCHGWILGEHGDSSV 198
>pdb|1I0Z|A Chain A, Human Heart L-Lactate Dehydrogenase H Chain, Ternary
Complex With Nadh And Oxamate
pdb|1I0Z|B Chain B, Human Heart L-Lactate Dehydrogenase H Chain, Ternary
Complex With Nadh And Oxamate
Length = 333
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 54/112 (48%), Gaps = 5/112 (4%)
Query: 117 IVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEV 176
IV++ AGV ++ G +R +L N + K + I K P I+ ++SNPV+ I V
Sbjct: 91 IVVVTAGVRQQEGESRLNLVQRNVNVFKFIIPQIVKYSPDCIIIVVSNPVD----ILTYV 146
Query: 177 FKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTI 227
K+ R++G LD R +AE LG+ P ++G H ++
Sbjct: 147 TWKLSGLPKHRVIGSGCNLDSARFRYLMAEKLGIHPSSCHGWILGEHGDSSV 198
>pdb|6LDH|A Chain A, Refined Crystal Structure Of Dogfish M4 Apo-Lactate
Dehydrogenase
pdb|8LDH|A Chain A, Refined Crystal Structure Of Dogfish M4 Apo-Lactate
Dehydrogenase
Length = 330
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 74/325 (22%), Positives = 130/325 (40%), Gaps = 34/325 (10%)
Query: 48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--GVTADISH----MDTNAVVRG 101
K+ V+G G +G A+ + + L + L DV+ G D+ H + T +V G
Sbjct: 23 KITVVGV-GAVGMACAISILMKDLADEVALVDVMEDKLKGEMMDLQHGSLFLHTAKIVSG 81
Query: 102 FLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNL 161
+ G +V+I AG ++ G +R +L N I K + I K P I+ +
Sbjct: 82 -----KDYSVSAGSKLVVITAGARQQEGESRLNLVQRNVNIFKFIIPNIVKHSPDCIILV 136
Query: 162 ISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVG 220
+SNPV+ +A K+ R++G LD R + E LG+ V+G
Sbjct: 137 VSNPVDVLTYVAW----KLSGLPMHRIIGSGCNLDSARFRYLMGERLGVHSCSCHGWVIG 192
Query: 221 GH--------AGVTILPLLSQVKPSCSLTPTEIDY--LTDRIQNGGTEVVEAKTGAGSAT 270
H +G+ + + ++ P + D+ L + + EV++ K G +
Sbjct: 193 EHGDSVPSVWSGMNVASI--KLHPLDGTNKDKQDWKKLHKDVVDSAYEVIKLK---GYTS 247
Query: 271 LSMAYAAAKFADACLRGLRGDAGVIECAYVASTVTELPFFASKVRLGRAGIEEIYSLGPL 330
++ + A A+ ++ L V + + F + L GI I + L
Sbjct: 248 WAIGLSVADLAETIMKNLCRVHPVSTMVKDFYGIKDNVFLSLPCVLNDHGISNIVKM-KL 306
Query: 331 NEYERAGLEKAKKELAGSIQKGVSF 355
E L+K+ L IQK + F
Sbjct: 307 KPNEEQQLQKSATTL-WDIQKDLKF 330
>pdb|1LDM|A Chain A, Refined Crystal Structure Of Dogfish M4 Apo-Lactate
Dehydrogenase
Length = 329
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 74/325 (22%), Positives = 130/325 (40%), Gaps = 34/325 (10%)
Query: 48 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--GVTADISH----MDTNAVVRG 101
K+ V+G G +G A+ + + L + L DV+ G D+ H + T +V G
Sbjct: 22 KITVVGV-GAVGMACAISILMKDLADEVALVDVMEDKLKGEMMDLQHGSLFLHTAKIVSG 80
Query: 102 FLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNL 161
+ G +V+I AG ++ G +R +L N I K + I K P I+ +
Sbjct: 81 -----KDYSVSAGSKLVVITAGARQQEGESRLNLVQRNVNIFKFIIPNIVKHSPDCIILV 135
Query: 162 ISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVG 220
+SNPV+ +A K+ R++G LD R + E LG+ V+G
Sbjct: 136 VSNPVDVLTYVAW----KLSGLPMHRIIGSGCNLDSARFRYLMGERLGVHSCSCHGWVIG 191
Query: 221 GH--------AGVTILPLLSQVKPSCSLTPTEIDY--LTDRIQNGGTEVVEAKTGAGSAT 270
H +G+ + + ++ P + D+ L + + EV++ K G +
Sbjct: 192 EHGDSVPSVWSGMNVASI--KLHPLDGTNKDKQDWKKLHKDVVDSAYEVIKLK---GYTS 246
Query: 271 LSMAYAAAKFADACLRGLRGDAGVIECAYVASTVTELPFFASKVRLGRAGIEEIYSLGPL 330
++ + A A+ ++ L V + + F + L GI I + L
Sbjct: 247 WAIGLSVADLAETIMKNLCRVHPVSTMVKDFYGIKDNVFLSLPCVLNDHGISNIVKM-KL 305
Query: 331 NEYERAGLEKAKKELAGSIQKGVSF 355
E L+K+ L IQK + F
Sbjct: 306 KPNEEQQLQKSATTL-WDIQKDLKF 329
>pdb|5LDH|A Chain A, Structure Of The Active Ternary Complex Of Pig Heart
Lactate Dehydrogenase With S-Lac-Nad At 2.7 Angstroms
Resolution
pdb|5LDH|B Chain B, Structure Of The Active Ternary Complex Of Pig Heart
Lactate Dehydrogenase With S-Lac-Nad At 2.7 Angstroms
Resolution
Length = 334
Score = 45.1 bits (105), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 53/112 (47%), Gaps = 5/112 (4%)
Query: 117 IVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEV 176
IV++ AGV ++ G +R +L N + K + I K P I+ ++SNPV+ I V
Sbjct: 92 IVVVTAGVRQQEGESRLNLVQRNVNVFKFIIPQIVKYSPNCIIIVVSNPVD----ILTYV 147
Query: 177 FKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTI 227
K+ R++G LD R + E LG+ P ++G H ++
Sbjct: 148 AWKLSGLPKHRVIGSGCNLDSARFRYLMGEKLGVHPSSCHGWILGEHGDSSV 199
>pdb|1HYH|A Chain A, Crystal Structure Of L-2-hydroxyisocaproate Dehydrogenase
From Lactobacillus Confusus At 2.2 Angstroms
Resolution-an Example Of Strong Asymmetry Between
Subunits
pdb|1HYH|B Chain B, Crystal Structure Of L-2-hydroxyisocaproate Dehydrogenase
From Lactobacillus Confusus At 2.2 Angstroms
Resolution-an Example Of Strong Asymmetry Between
Subunits
pdb|1HYH|C Chain C, Crystal Structure Of L-2-hydroxyisocaproate Dehydrogenase
From Lactobacillus Confusus At 2.2 Angstroms
Resolution-an Example Of Strong Asymmetry Between
Subunits
pdb|1HYH|D Chain D, Crystal Structure Of L-2-hydroxyisocaproate Dehydrogenase
From Lactobacillus Confusus At 2.2 Angstroms
Resolution-an Example Of Strong Asymmetry Between
Subunits
Length = 309
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 50/187 (26%), Positives = 82/187 (43%), Gaps = 19/187 (10%)
Query: 111 ALTGMDIVIIPAGVPR----KPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPV 166
AL D+VI G + P R + +V+++ + + ++ +ISNPV
Sbjct: 66 ALADADVVISTLGNIKLQQDNPTGDRFAELKFTSSMVQSVGTNLKESGFHGVLVVISNPV 125
Query: 167 NSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGV 225
+ + +F+ V + +++G T+LD R V E LDPR V +G H G
Sbjct: 126 D----VITALFQHVTGFPAHKVIGTGTLLDTARMQRAVGEAFDLDPRSVSGYNLGEH-GN 180
Query: 226 TILPLLSQVK----PSCSLTPT-EIDY--LTDRIQNGGTEVVEAK--TGAGSATLSMAYA 276
+ S V+ P +L +ID + + + GG V+ K T G AT ++ A
Sbjct: 181 SQFVAWSTVRVMGQPIVTLADAGDIDLAAIEEEARKGGFTVLNGKGYTSYGVATSAIRIA 240
Query: 277 AAKFADA 283
A ADA
Sbjct: 241 KAVMADA 247
>pdb|1CIV|A Chain A, Chloroplast Nadp-Dependent Malate Dehydrogenase From
Flaveria Bidentis
Length = 385
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 45/106 (42%), Gaps = 4/106 (3%)
Query: 125 PRKPGMTRDDLFNINAGIVKTLCEGI-AKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTY 183
PR PGM R DL +IN I + + A P V ++ NP N+ I K
Sbjct: 129 PRGPGMERADLLDINGQIFAEQGKALNAVASPNVKVMVVGNPCNTNALIC---LKNAPNI 185
Query: 184 DPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILP 229
PK +T LD RA +A G+ +V + G+ T +P
Sbjct: 186 PPKNFHALTRLDENRAKCQLALKAGVFYDKVSNVTIWGNHSTTQVP 231
>pdb|3D5T|A Chain A, Crystal Structure Of Malate Dehydrogenase From
Burkholderia Pseudomallei
pdb|3D5T|B Chain B, Crystal Structure Of Malate Dehydrogenase From
Burkholderia Pseudomallei
pdb|3D5T|C Chain C, Crystal Structure Of Malate Dehydrogenase From
Burkholderia Pseudomallei
pdb|3D5T|D Chain D, Crystal Structure Of Malate Dehydrogenase From
Burkholderia Pseudomallei
Length = 331
Score = 37.0 bits (84), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 50/196 (25%), Positives = 79/196 (40%), Gaps = 16/196 (8%)
Query: 45 PGFKVAVLGAAGGIGQPL-------AMLMKINPLVSVLHLYDVVNT-PGVTADISHMDTN 96
P +VAV GAAG I L +L K P+ +L L D+ V + +D
Sbjct: 8 PAKRVAVTGAAGQIAYSLLFRIANGDLLGKDQPV--ILQLLDLPQAQAAVKGVVMELDDC 65
Query: 97 A--VVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC 154
A ++ G + + A D+ ++ PR GM R DL + NA I + +
Sbjct: 66 AFPLLAGVVITDDPKVAFKDADVALLVGARPRSKGMERKDLLSANAEIFTVQGAALNEVA 125
Query: 155 PKAI-VNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPRE 213
+ + V ++ NP N+ IA K K + LD RA + +A G
Sbjct: 126 SRDVKVLVVGNPANTNAYIA---MKSAPDLPKKNFTAMLRLDHNRALSQLAAKSGKPVAS 182
Query: 214 VDVPVVGGHAGVTILP 229
++ V G+ T+ P
Sbjct: 183 IEKLAVWGNHSPTMYP 198
>pdb|7MDH|A Chain A, Structural Basis For Light Acitvation Of A Chloroplast
Enzyme. The Structure Of Sorghum Nadp-Malate
Dehydrogenase In Its Oxidized Form
pdb|7MDH|B Chain B, Structural Basis For Light Acitvation Of A Chloroplast
Enzyme. The Structure Of Sorghum Nadp-Malate
Dehydrogenase In Its Oxidized Form
pdb|7MDH|C Chain C, Structural Basis For Light Acitvation Of A Chloroplast
Enzyme. The Structure Of Sorghum Nadp-Malate
Dehydrogenase In Its Oxidized Form
pdb|7MDH|D Chain D, Structural Basis For Light Acitvation Of A Chloroplast
Enzyme. The Structure Of Sorghum Nadp-Malate
Dehydrogenase In Its Oxidized Form
Length = 375
Score = 34.3 bits (77), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 42/177 (23%), Positives = 71/177 (40%), Gaps = 13/177 (7%)
Query: 110 DALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAI-VNLISNPVNS 168
+ +D ++ PR PGM R L +IN I + + K + V ++ NP N+
Sbjct: 104 EVFEDVDWALLIGAKPRGPGMERAALLDINGQIFADQGKALNAVASKNVKVLVVGNPCNT 163
Query: 169 TVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREV-DVPVVGGHAGVTI 227
I K K +T LD RA +A G+ +V +V + G H+ +
Sbjct: 164 NALIC---LKNAPDIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNVTIWGNHSTTQV 220
Query: 228 LPLLSQ------VKPSCSLTPTEIDYLTDRIQNGGTEVVE--AKTGAGSATLSMAYA 276
L+ VK T + T +Q G +++ ++ A S +S+A A
Sbjct: 221 PDFLNAKIDGRPVKEVIKRTKWLEEEFTITVQKRGGALIQKWGRSSAASTAVSIADA 277
>pdb|3U95|A Chain A, Crystal Structure Of A Putative Alpha-Glucosidase From
Thermotoga Neapolitana
pdb|3U95|B Chain B, Crystal Structure Of A Putative Alpha-Glucosidase From
Thermotoga Neapolitana
pdb|3U95|C Chain C, Crystal Structure Of A Putative Alpha-Glucosidase From
Thermotoga Neapolitana
pdb|3U95|D Chain D, Crystal Structure Of A Putative Alpha-Glucosidase From
Thermotoga Neapolitana
pdb|3U95|E Chain E, Crystal Structure Of A Putative Alpha-Glucosidase From
Thermotoga Neapolitana
pdb|3U95|F Chain F, Crystal Structure Of A Putative Alpha-Glucosidase From
Thermotoga Neapolitana
Length = 477
Score = 32.3 bits (72), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 38/85 (44%), Gaps = 15/85 (17%)
Query: 146 LCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAE 205
+ E + K PKA + +NPV E+ + V +R G ++ V E
Sbjct: 142 IAEKMKKMAPKAYLMQTANPV-------FEITQAV-----RRWTGANIIGFCHGVAGVYE 189
Query: 206 V---LGLDPREVDVPVVGGHAGVTI 227
V LGLDP EVD V G + G+ +
Sbjct: 190 VFERLGLDPEEVDWQVAGVNHGIWL 214
>pdb|3P2Y|A Chain A, Crystal Structure Of Alanine DehydrogenasePYRIDINE
NUCLEOTIDE Transhydrogenase From Mycobacterium Smegmatis
Length = 381
Score = 31.2 bits (69), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 15/24 (62%), Positives = 17/24 (70%)
Query: 105 QQQLEDALTGMDIVIIPAGVPRKP 128
QQ LEDA+T DIVI A VP +P
Sbjct: 256 QQALEDAITKFDIVITTALVPGRP 279
>pdb|1GEG|A Chain A, Cryatal Structure Analysis Of Meso-2,3-Butanediol
Dehydrogenase
pdb|1GEG|B Chain B, Cryatal Structure Analysis Of Meso-2,3-Butanediol
Dehydrogenase
pdb|1GEG|C Chain C, Cryatal Structure Analysis Of Meso-2,3-Butanediol
Dehydrogenase
pdb|1GEG|D Chain D, Cryatal Structure Analysis Of Meso-2,3-Butanediol
Dehydrogenase
pdb|1GEG|E Chain E, Cryatal Structure Analysis Of Meso-2,3-Butanediol
Dehydrogenase
pdb|1GEG|F Chain F, Cryatal Structure Analysis Of Meso-2,3-Butanediol
Dehydrogenase
pdb|1GEG|G Chain G, Cryatal Structure Analysis Of Meso-2,3-Butanediol
Dehydrogenase
pdb|1GEG|H Chain H, Cryatal Structure Analysis Of Meso-2,3-Butanediol
Dehydrogenase
Length = 256
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 53/119 (44%), Gaps = 19/119 (15%)
Query: 48 KVA-VLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVV------- 99
KVA V GA GIG+ +A+ + + + Y+ V ++I+ +AV
Sbjct: 3 KVALVTGAGQGIGKAIALRLVKDGFAVAIADYNDATAKAVASEINQAGGHAVAVKVDVSD 62
Query: 100 --RGFLGQQQLEDALTGMDIVIIPAGV-PRKPGMT-----RDDLFNINAGIVKTLCEGI 150
+ F +Q L G D+++ AGV P P + D ++NIN VK + GI
Sbjct: 63 RDQVFAAVEQARKTLGGFDVIVNNAGVAPSTPIESITPEIVDKVYNIN---VKGVIWGI 118
>pdb|4DX1|A Chain A, Crystal Structure Of The Human Trpv4 Ankyrin Repeat Domain
pdb|4DX1|B Chain B, Crystal Structure Of The Human Trpv4 Ankyrin Repeat Domain
pdb|4DX2|A Chain A, Crystal Structure Of The Human Trpv4 Ankyrin Repeat Domain
pdb|4DX2|B Chain B, Crystal Structure Of The Human Trpv4 Ankyrin Repeat Domain
Length = 259
Score = 29.3 bits (64), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
Query: 153 CCPKAIVNLISNPVNSTVPIAAEVFKKVGT 182
C PKA++NL SN N T+P+ ++ ++ G
Sbjct: 47 CLPKALLNL-SNGRNDTIPVLLDIAERTGN 75
>pdb|1YS4|A Chain A, Structure Of Aspartate-Semialdehyde Dehydrogenase From
Methanococcus Jannaschii
pdb|1YS4|B Chain B, Structure Of Aspartate-Semialdehyde Dehydrogenase From
Methanococcus Jannaschii
Length = 354
Score = 28.9 bits (63), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 19/38 (50%)
Query: 40 AKGGSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHL 77
+KG KV VLGA G +GQ L+ +P + L
Sbjct: 2 SKGEKXKIKVGVLGATGSVGQRFVQLLADHPXFELTAL 39
>pdb|3GRP|A Chain A, 2.1 Angstrom Crystal Structure Of
3-Ketoacyl-(Acyl-Carrier-Protein) Reductase From
Bartonella Henselae
pdb|3GRP|B Chain B, 2.1 Angstrom Crystal Structure Of
3-Ketoacyl-(Acyl-Carrier-Protein) Reductase From
Bartonella Henselae
pdb|3GRP|C Chain C, 2.1 Angstrom Crystal Structure Of
3-Ketoacyl-(Acyl-Carrier-Protein) Reductase From
Bartonella Henselae
pdb|3GRP|D Chain D, 2.1 Angstrom Crystal Structure Of
3-Ketoacyl-(Acyl-Carrier-Protein) Reductase From
Bartonella Henselae
Length = 266
Score = 28.9 bits (63), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 36/160 (22%), Positives = 61/160 (38%), Gaps = 27/160 (16%)
Query: 33 LGRMDCRAKGGSPGFKVA-----VLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVT 87
+G ++ + +G FK+ V GA GGIG+ +A + LH +
Sbjct: 9 MGTLEAQTQGPGSMFKLTGRKALVTGATGGIGEAIARCFHAQGAIVGLHGTREDKLKEIA 68
Query: 88 ADISH----MDTNAVVRGFLGQ--QQLEDALTGMDIVIIPAGVPRKPGMTR------DDL 135
AD+ N R + Q + E + G+DI++ AG+ R R DD+
Sbjct: 69 ADLGKDVFVFSANLSDRKSIKQLAEVAEREMEGIDILVNNAGITRDGLFVRMQDQDWDDV 128
Query: 136 FNINAGIVKTLCEGIAKCCPK----------AIVNLISNP 165
+N TL + + +IV ++ NP
Sbjct: 129 LAVNLTAASTLTRELIHSMMRRRYGRIINITSIVGVVGNP 168
>pdb|4A27|A Chain A, Crystal Structure Of Human Synaptic Vesicle Membrane
Protein Vat-1 Homolog-Like Protein
pdb|4A27|B Chain B, Crystal Structure Of Human Synaptic Vesicle Membrane
Protein Vat-1 Homolog-Like Protein
Length = 349
Score = 27.7 bits (60), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Query: 46 GFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHM-DTNA 97
G V V A GG+GQ +A L P V+V + ++H+ D NA
Sbjct: 143 GMSVLVHSAGGGVGQAVAQLCSTVPNVTVFGTASTFKHEAIKDSVTHLFDRNA 195
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.136 0.393
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,454,945
Number of Sequences: 62578
Number of extensions: 440559
Number of successful extensions: 1434
Number of sequences better than 100.0: 96
Number of HSP's better than 100.0 without gapping: 82
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 1256
Number of HSP's gapped (non-prelim): 99
length of query: 358
length of database: 14,973,337
effective HSP length: 100
effective length of query: 258
effective length of database: 8,715,537
effective search space: 2248608546
effective search space used: 2248608546
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)