BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 018269
         (358 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|C4K7E1|K6PF_HAMD5 6-phosphofructokinase OS=Hamiltonella defensa subsp. Acyrthosiphon
           pisum (strain 5AT) GN=pfkA PE=3 SV=1
          Length = 327

 Score = 36.2 bits (82), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 19/68 (27%), Positives = 38/68 (55%), Gaps = 8/68 (11%)

Query: 196 TQSKHK--SFIEILSR---DPNLAERYAARGQYVMLPEVPFEKFRVGSQF---FILAKRH 247
           T S H+  S +E++ R   D  LA   A   +++++PEVPF++  + ++        K+H
Sbjct: 158 TSSSHQRISIVEVMGRHCGDLTLAAAIAGGCEFIVIPEVPFDRKELITEIKAGIAKGKKH 217

Query: 248 ALLVLKDR 255
           A++ + +R
Sbjct: 218 AIITITER 225


>sp|O32245|YVBH_BACSU Uncharacterized protein YvbH OS=Bacillus subtilis (strain 168)
           GN=yvbH PE=4 SV=1
          Length = 204

 Score = 34.7 bits (78), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 28/102 (27%), Positives = 48/102 (47%), Gaps = 5/102 (4%)

Query: 53  ATLSASSSRASSSKVSHLSFSNARPKIAFLFLTNSDLVFAPVWSQFFSGNERLYNIYVHA 112
           A +     RA+SSK +   +  ++ KI+ +FL  +  V   V  +F  G E+ ++I VH 
Sbjct: 58  ALIHVDGERATSSKRTLKRYPYSQYKISDVFLETAGKVDLDVEIKFKLGGEQ-FDIDVHK 116

Query: 113 DPSAKLSDTHKLFQNRFIPAKRTERASPTLISAARRLMANAI 154
           D   KL D +K      +    T   +  LI+ A + +  A+
Sbjct: 117 DQIEKLKDLYKA----LLRIAETTYENDILINQAEQSLDKAV 154


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.325    0.137    0.417 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 128,863,228
Number of Sequences: 539616
Number of extensions: 5108911
Number of successful extensions: 13603
Number of sequences better than 100.0: 2
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 13603
Number of HSP's gapped (non-prelim): 2
length of query: 358
length of database: 191,569,459
effective HSP length: 119
effective length of query: 239
effective length of database: 127,355,155
effective search space: 30437882045
effective search space used: 30437882045
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 62 (28.5 bits)